BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781000|ref|YP_003065413.1| tRNA
(uracil-5-)-methyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (371 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781000|ref|YP_003065413.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040677|gb|ACT57473.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 371

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/371 (100%), Positives = 371/371 (100%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH
Sbjct: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT
Sbjct: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY
Sbjct: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA
Sbjct: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP
Sbjct: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV
Sbjct: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360

Query: 361 LLVRKPSGWHQ 371
           LLVRKPSGWHQ
Sbjct: 361 LLVRKPSGWHQ 371


>gi|85060132|ref|YP_455834.1| tRNA (uracil-5-)-methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|123518780|sp|Q2NQZ6|TRMA_SODGM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|84780652|dbj|BAE75429.1| tRNA (uracil-5)-methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 370

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 305/365 (83%), Positives = 325/365 (89%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL IDQYEQQLAEK  RLRQMMLAFQ P  QIFRS+P HYRMRAEF IWHD DDLYHIMF
Sbjct: 5   TLPIDQYEQQLAEKAARLRQMMLAFQAPEAQIFRSQPAHYRMRAEFRIWHDEDDLYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           D QTK R+RID+FMPGS LINALM EMM  IR EPLLRAKLFQIDYLT+QS +A+VTLIY
Sbjct: 65  DPQTKARIRIDHFMPGSPLINALMAEMMTAIRPEPLLRAKLFQIDYLTTQSGEAVVTLIY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LDDAWRECA  LRDAL AR Y IQ IGRANKTKI LDRDYVDERLTVAGRTLIY+QI
Sbjct: 125 HRPLDDAWRECAAGLRDALRARGYHIQFIGRANKTKIYLDRDYVDERLTVAGRTLIYQQI 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNAGINVHMLEW LAAT+G QGDLLELYCGNGNFSL LARHFDRVLA EIAK S
Sbjct: 185 ENSFTQPNAGINVHMLEWALAATEGAQGDLLELYCGNGNFSLALARHFDRVLATEIAKLS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VEAA YNIAANH++NV+IVRMS++EFTQAMR+EREF RLK+ID+ SYR +TIFVDPPRSG
Sbjct: 245 VEAAHYNIAANHIDNVQIVRMSAEEFTQAMRKEREFTRLKEIDLQSYRCETIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD+ATV MVQAYP ILYISCNPDSLCR+LS LSTTHTIERLALFDQFPYT HMECGVLLV
Sbjct: 305 LDEATVSMVQAYPQILYISCNPDSLCRNLSTLSTTHTIERLALFDQFPYTHHMECGVLLV 364

Query: 364 RKPSG 368
           RK + 
Sbjct: 365 RKATA 369


>gi|156935907|ref|YP_001439823.1| tRNA (uracil-5-)-methyltransferase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534161|gb|ABU78987.1| hypothetical protein ESA_03801 [Cronobacter sakazakii ATCC BAA-894]
          Length = 367

 Score =  527 bits (1358), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 248/361 (68%), Positives = 293/361 (81%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QLAEK +RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 7   LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 66

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+T+ R+R+D F   S LINALM  M+A IR    LR KLFQIDYLT++S QA+V+L+YH
Sbjct: 67  QETRSRIRVDSFPAASELINALMPRMIAGIRDNRTLRHKLFQIDYLTTRSQQAVVSLLYH 126

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAWRE A RLRDAL A  + +  IGRA KTKI LD+DY+DERL VAG  +IYRQ+E
Sbjct: 127 RALDDAWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 186

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW L  T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 187 NSFTQPNAAMNIHMLEWALDVTQGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 246

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 247 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 306

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQAYPHILYISCNP +LC +L  LS TH +ERLALFDQFPYT HMECGVLL R
Sbjct: 307 DQETVKMVQAYPHILYISCNPQTLCENLDTLSQTHRVERLALFDQFPYTHHMECGVLLTR 366

Query: 365 K 365
           +
Sbjct: 367 R 367


>gi|171769880|sp|A7ML95|TRMA_ENTS8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 366

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/361 (68%), Positives = 293/361 (81%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QLAEK +RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+T+ R+R+D F   S LINALM  M+A IR    LR KLFQIDYLT++S QA+V+L+YH
Sbjct: 66  QETRSRIRVDSFPAASELINALMPRMIAGIRDNRTLRHKLFQIDYLTTRSQQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAWRE A RLRDAL A  + +  IGRA KTKI LD+DY+DERL VAG  +IYRQ+E
Sbjct: 126 RALDDAWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW L  T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIHMLEWALDVTQGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQAYPHILYISCNP +LC +L  LS TH +ERLALFDQFPYT HMECGVLL R
Sbjct: 306 DQETVKMVQAYPHILYISCNPQTLCENLDTLSQTHRVERLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|238892362|ref|YP_002917096.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330001331|ref|ZP_08303948.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. MS 92-3]
 gi|238544678|dbj|BAH61029.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328537722|gb|EGF63927.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 366

 Score =  524 bits (1350), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 246/361 (68%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDDAWRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG  GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   R+FNRL+ ID+HSY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|261343029|ref|ZP_05970887.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
 gi|288314783|gb|EFC53721.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 366

 Score =  524 bits (1350), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/361 (68%), Positives = 291/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R++ F   S LIN LM  MM  +R  P+LR KLFQIDYLT+QS+QAIV+L+YH
Sbjct: 66  QQTKSRIRVNSFPAASELINQLMTLMMDGVRNNPVLRHKLFQIDYLTTQSNQAIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L+D WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KALNDEWREQAEALRDALRAQNLNVHLIGRATKTKIMLDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L ATKG  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNVQMLEWALNATKGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|152972754|ref|YP_001337900.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|172052447|sp|A6TGE9|TRMA_KLEP7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|150957603|gb|ABR79633.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 366

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+++YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSVLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDDAWRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG  GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   R+FNRL+ ID+HSY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|262041733|ref|ZP_06014924.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040920|gb|EEW42000.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 366

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDDAWRE A  LRD L A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDAWREQAEALRDTLRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG  GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   R+FNRL+ ID+HSY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|290513037|ref|ZP_06552400.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|289774419|gb|EFD82424.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 366

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/361 (68%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFATPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDDAWRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG  GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|332998394|gb|EGK17992.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-272]
 gi|333014087|gb|EGK33444.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-227]
          Length = 366

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/361 (68%), Positives = 291/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKNRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQIE
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQIE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+F+TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|24115259|ref|NP_709769.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 301]
 gi|30064744|ref|NP_838915.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|82546316|ref|YP_410263.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii Sb227]
 gi|50401541|sp|Q820Z9|TRMA_SHIFL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|123558094|sp|Q31U23|TRMA_SHIBS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|24054550|gb|AAN45476.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 301]
 gi|30043004|gb|AAP18726.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|81247727|gb|ABB68435.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii Sb227]
 gi|281603359|gb|ADA76343.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2002017]
 gi|313648863|gb|EFS13302.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|332751536|gb|EGJ81935.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 4343-70]
 gi|332751807|gb|EGJ82204.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-671]
 gi|332752553|gb|EGJ82939.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2747-71]
 gi|332764486|gb|EGJ94718.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2930-71]
 gi|332997951|gb|EGK17557.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri VA-6]
 gi|333014014|gb|EGK33374.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-304]
          Length = 366

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/361 (68%), Positives = 291/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+F+TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|288937811|ref|YP_003441870.1| tRNA (uracil-5-)-methyltransferase [Klebsiella variicola At-22]
 gi|288892520|gb|ADC60838.1| tRNA (uracil-5-)-methyltransferase [Klebsiella variicola At-22]
          Length = 366

 Score =  521 bits (1343), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/361 (68%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPELRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDDAWRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG  GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|110807824|ref|YP_691344.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 5 str. 8401]
 gi|123146465|sp|Q0SY26|TRMA_SHIF8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|110617372|gb|ABF06039.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 5 str. 8401]
          Length = 366

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI ANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+F+TIFVDPPRSGL
Sbjct: 246 AAAQYNITANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|295095109|emb|CBK84199.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 366

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 291/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+QS+QAIV+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTLMIDGVRNNPVLRNKLFQIDYLTTQSNQAIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L D WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ ++YRQ+E
Sbjct: 126 KALTDEWREQAEALRDALRAQNINVHLIGRATKTKIMLDQDYIDERLPVAGKEMVYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNVQMLEWALKATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|296105348|ref|YP_003615494.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059807|gb|ADF64545.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 366

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 242/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R++ F   S LIN LM  M+  +R  P+LR KLFQIDYLT+QS+QAIV+L+YH
Sbjct: 66  QQTKSRIRVNSFPAASELINQLMTLMIDGVRNNPVLRHKLFQIDYLTTQSNQAIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L+D WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL+VAG+ ++YRQ+E
Sbjct: 126 KALNDEWREQAEALRDALRAQNINVHLIGRATKTKIMLDQDYIDERLSVAGKEMVYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNVQMLEWALKATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLEGIDLKGYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|146313653|ref|YP_001178727.1| tRNA (uracil-5-)-methyltransferase [Enterobacter sp. 638]
 gi|172046005|sp|A4WG46|TRMA_ENT38 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|145320529|gb|ABP62676.1| tRNA (uracil-5-)-methyltransferase [Enterobacter sp. 638]
          Length = 366

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMTPFAAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R++ F   S LIN LM  M+  +R  P LR KLFQIDYLT+QS+QAIV+++YH
Sbjct: 66  QQTKSRIRVNSFPAASELINQLMTLMIEGVRNNPQLRHKLFQIDYLTTQSNQAIVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L D WR+ A  LRDAL A+   + LIGRA KTKI LD+DYVDERL VAG+ +IYRQ+E
Sbjct: 126 KKLGDEWRKEAEVLRDALRAQNINVHLIGRATKTKIMLDQDYVDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L+AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNVQMLEWALSATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIAANH++NV+I+RM+++EFTQAM  EREFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAANHIDNVQIIRMAAEEFTQAMNGEREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTL 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|323974255|gb|EGB69385.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TW10509]
          Length = 366

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|15804563|ref|NP_290604.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7
           EDL933]
 gi|15834150|ref|NP_312923.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           Sakai]
 gi|168761641|ref|ZP_02786648.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168786833|ref|ZP_02811840.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|168799442|ref|ZP_02824449.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|217326606|ref|ZP_03442690.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|261226409|ref|ZP_05940690.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256809|ref|ZP_05949342.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285387|ref|YP_003502205.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-
           methyltransferase) [Escherichia coli O55:H7 str. CB9615]
 gi|293417475|ref|ZP_06660099.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B185]
 gi|20178144|sp|Q8X723|TRMA_ECO57 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|12518892|gb|AAG59169.1|AE005628_5 tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13364372|dbj|BAB38319.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           Sakai]
 gi|189367875|gb|EDU86291.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373235|gb|EDU91651.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|189378014|gb|EDU96430.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|209751938|gb|ACI74276.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli]
 gi|209751940|gb|ACI74277.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli]
 gi|209751942|gb|ACI74278.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli]
 gi|209751944|gb|ACI74279.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli]
 gi|217322827|gb|EEC31251.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|290765260|gb|ADD59221.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-
           methyltransferase) [Escherichia coli O55:H7 str. CB9615]
 gi|291430995|gb|EFF03991.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B185]
 gi|320190931|gb|EFW65581.1| tRNA uracil-5--methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639141|gb|EFX08777.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           G5101]
 gi|320644533|gb|EFX13594.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H- str.
           493-89]
 gi|320649857|gb|EFX18372.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H- str. H
           2687]
 gi|320665949|gb|EFX32975.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338015|gb|EGD61845.1| tRNA uracil-5-methyltransferase [Escherichia coli O157:H7 str.
           1044]
 gi|326342690|gb|EGD66463.1| tRNA uracil-5--methyltransferase [Escherichia coli O157:H7 str.
           1125]
          Length = 366

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|301023751|ref|ZP_07187490.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 69-1]
 gi|300396895|gb|EFJ80433.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 69-1]
          Length = 366

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|301645162|ref|ZP_07245119.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|307140664|ref|ZP_07500020.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736]
 gi|331644703|ref|ZP_08345822.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736]
 gi|301076541|gb|EFK91347.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|315617762|gb|EFU98367.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 3431]
 gi|331036165|gb|EGI08401.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736]
          Length = 366

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/361 (68%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|320660831|gb|EFX28281.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 366

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRYKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|331655665|ref|ZP_08356657.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M718]
 gi|331046766|gb|EGI18851.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M718]
          Length = 366

 Score =  518 bits (1335), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|206579514|ref|YP_002241174.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae 342]
 gi|226705982|sp|B5XZ11|TRMA_KLEP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|206568572|gb|ACI10348.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae 342]
          Length = 366

 Score =  518 bits (1334), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDTWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKEATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|331685711|ref|ZP_08386294.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H299]
 gi|331077182|gb|EGI48397.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H299]
          Length = 366

 Score =  518 bits (1334), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPASHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|91213517|ref|YP_543503.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UTI89]
 gi|110644309|ref|YP_672039.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 536]
 gi|117626238|ref|YP_859561.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli APEC O1]
 gi|191172684|ref|ZP_03034222.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli F11]
 gi|218561040|ref|YP_002393953.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli S88]
 gi|227885284|ref|ZP_04003089.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 83972]
 gi|237703006|ref|ZP_04533487.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|300975975|ref|ZP_07173247.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|331660529|ref|ZP_08361463.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA206]
 gi|122421621|sp|Q1R3U2|TRMA_ECOUT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|123343349|sp|Q0TA91|TRMA_ECOL5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|134035058|sp|A1AIE7|TRMA_ECOK1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705972|sp|B7MIA5|TRMA_ECO45 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|91075091|gb|ABE09972.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UTI89]
 gi|110345901|gb|ABG72138.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 536]
 gi|115515362|gb|ABJ03437.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli APEC O1]
 gi|190906988|gb|EDV66589.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli F11]
 gi|218367809|emb|CAR05603.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli S88]
 gi|222035685|emb|CAP78430.1| hypothetical protein LF82_2304 [Escherichia coli LF82]
 gi|226902943|gb|EEH89202.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227837736|gb|EEJ48202.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 83972]
 gi|294493983|gb|ADE92739.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IHE3034]
 gi|300410165|gb|EFJ93703.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|307556117|gb|ADN48892.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ABU 83972]
 gi|307629046|gb|ADN73350.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UM146]
 gi|312948548|gb|ADR29375.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315289657|gb|EFU49050.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 110-3]
 gi|315292667|gb|EFU52019.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 153-1]
 gi|315298484|gb|EFU57739.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 16-3]
 gi|320196760|gb|EFW71382.1| tRNA uracil-5--methyltransferase [Escherichia coli WV_060327]
 gi|323949463|gb|EGB45352.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H252]
 gi|323954256|gb|EGB50041.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H263]
 gi|324012462|gb|EGB81681.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 60-1]
 gi|331052478|gb|EGI24515.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA206]
          Length = 366

 Score =  518 bits (1334), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|306813764|ref|ZP_07447940.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli NC101]
 gi|305852762|gb|EFM53209.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli NC101]
 gi|324006693|gb|EGB75912.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 57-2]
          Length = 366

 Score =  518 bits (1333), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPFLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDGWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|260595992|ref|YP_003208563.1| tRNA (uracil-5-)-methyltransferase [Cronobacter turicensis z3032]
 gi|260215169|emb|CBA26983.1| tRNA (uracil-5-)-methyltransferase [Cronobacter turicensis z3032]
          Length = 367

 Score =  518 bits (1333), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QLAEK +RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+T+ R+R+D F   S LINALM  M+  IR    LR KLFQIDYLT++S QA+V+L+YH
Sbjct: 66  QETRSRIRVDSFPAASELINALMPRMIEGIRGNRTLRHKLFQIDYLTTRSQQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L D WRE A RLRDAL A  + +  IGRA KTKI LD+DY+DERL VAG  +IYRQ+E
Sbjct: 126 RALGDDWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW L AT G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIHMLEWALDATLGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ +D+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGVDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQAYP ILYISCNP +LC +L  LS TH +ERLALFDQFPYT HMECGVLL R
Sbjct: 306 DQETVKMVQAYPRILYISCNPQTLCENLETLSQTHRVERLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|331665621|ref|ZP_08366519.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA143]
 gi|331057306|gb|EGI29296.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA143]
          Length = 366

 Score =  517 bits (1332), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|215489306|ref|YP_002331737.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312965374|ref|ZP_07779607.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 2362-75]
 gi|254789075|sp|B7UNU5|TRMA_ECO27 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|215267378|emb|CAS11829.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312290048|gb|EFR17935.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 2362-75]
          Length = 366

 Score =  517 bits (1332), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|323964325|gb|EGB59808.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M863]
 gi|327250611|gb|EGE62319.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli STEC_7v]
          Length = 366

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMITGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|188496220|ref|ZP_03003490.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 53638]
 gi|188491419|gb|EDU66522.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 53638]
          Length = 366

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|16131803|ref|NP_418400.1| tRNA m(5)U54 methyltransferase, SAM-dependen [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110065|ref|AP_003845.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|157155127|ref|YP_001465464.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E24377A]
 gi|157163442|ref|YP_001460760.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli HS]
 gi|170022023|ref|YP_001726977.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ATCC 8739]
 gi|170083434|ref|YP_001732754.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|191169527|ref|ZP_03031257.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B7A]
 gi|193064005|ref|ZP_03045091.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E22]
 gi|193068008|ref|ZP_03048973.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E110019]
 gi|194429393|ref|ZP_03061917.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B171]
 gi|194433193|ref|ZP_03065474.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1012]
 gi|194438266|ref|ZP_03070357.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 101-1]
 gi|209921451|ref|YP_002295535.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SE11]
 gi|218556528|ref|YP_002389442.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI1]
 gi|218697681|ref|YP_002405348.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 55989]
 gi|238903030|ref|YP_002928826.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BW2952]
 gi|253775396|ref|YP_003038227.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254039227|ref|ZP_04873277.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 1_1_43]
 gi|254163915|ref|YP_003047023.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B str. REL606]
 gi|256021670|ref|ZP_05435535.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9]
 gi|256025996|ref|ZP_05439861.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 4_1_40B]
 gi|260846774|ref|YP_003224552.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|300819387|ref|ZP_07099585.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300824362|ref|ZP_07104477.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|300902586|ref|ZP_07120562.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300926199|ref|ZP_07142005.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300928748|ref|ZP_07144264.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300954725|ref|ZP_07167159.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|301024174|ref|ZP_07187883.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|301307107|ref|ZP_07213140.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|301324909|ref|ZP_07218470.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|309797136|ref|ZP_07691533.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|312971741|ref|ZP_07785915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1827-70]
 gi|331670823|ref|ZP_08371659.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA271]
 gi|331680089|ref|ZP_08380751.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H591]
 gi|332282911|ref|ZP_08395324.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9]
 gi|136247|sp|P23003|TRMA_ECOLI RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|171855253|sp|A7ZUI5|TRMA_ECO24 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|172044453|sp|A8A773|TRMA_ECOHS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|189036039|sp|B1IVB3|TRMA_ECOLC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705975|sp|B7M721|TRMA_ECO8A RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705976|sp|B1XBX6|TRMA_ECODH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705978|sp|B6I5I3|TRMA_ECOSE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|254789076|sp|B7LA67|TRMA_ECO55 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|259547823|sp|C5A0R4|TRMA_ECOBW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262827689|sp|C5WBK5|TRMA_ECOBB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262827695|sp|C6UJK3|TRMA_ECOBR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|148051|gb|AAA24691.1| m-5-U54 transfer RNA methyltransferase [Escherichia coli]
 gi|396312|gb|AAC43071.1| tRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790403|gb|AAC76947.1| tRNA m(5)U54 methyltransferase, SAM-dependen [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676096|dbj|BAE77346.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|157069122|gb|ABV08377.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli HS]
 gi|157077157|gb|ABV16865.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E24377A]
 gi|169756951|gb|ACA79650.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ATCC 8739]
 gi|169891269|gb|ACB04976.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|190900432|gb|EDV60251.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B7A]
 gi|192929470|gb|EDV83078.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E22]
 gi|192958628|gb|EDV89066.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E110019]
 gi|194412540|gb|EDX28838.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B171]
 gi|194418477|gb|EDX34565.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1012]
 gi|194422703|gb|EDX38699.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 101-1]
 gi|209914710|dbj|BAG79784.1| tRNA (uracil-5)-methyltransferase [Escherichia coli SE11]
 gi|218354413|emb|CAV01205.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 55989]
 gi|218363297|emb|CAR00946.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI1]
 gi|226838663|gb|EEH70692.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 1_1_43]
 gi|238863708|gb|ACR65706.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BW2952]
 gi|242379501|emb|CAQ34316.1| tRNA m[5]U54 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253326440|gb|ACT31042.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975816|gb|ACT41487.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B str. REL606]
 gi|253979973|gb|ACT45643.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BL21(DE3)]
 gi|257761921|dbj|BAI33418.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260451199|gb|ACX41621.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli DH1]
 gi|299880533|gb|EFI88744.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|300318306|gb|EFJ68090.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300405346|gb|EFJ88884.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300417764|gb|EFK01075.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300463273|gb|EFK26766.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300523168|gb|EFK44237.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|300528070|gb|EFK49132.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300837690|gb|EFK65450.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300848193|gb|EFK75953.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|308119215|gb|EFO56477.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|309704389|emb|CBJ03738.1| tRNA (uracil-5)-methyltransferase [Escherichia coli ETEC H10407]
 gi|310334118|gb|EFQ00323.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1827-70]
 gi|315138530|dbj|BAJ45689.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli DH1]
 gi|315253601|gb|EFU33569.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 85-1]
 gi|320180305|gb|EFW55237.1| tRNA uracil-5--methyltransferase [Shigella boydii ATCC 9905]
 gi|320201540|gb|EFW76118.1| tRNA uracil-5--methyltransferase [Escherichia coli EC4100B]
 gi|323161256|gb|EFZ47169.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E128010]
 gi|323182070|gb|EFZ67480.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1357]
 gi|323934454|gb|EGB30867.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E1520]
 gi|323939046|gb|EGB35264.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E482]
 gi|323943618|gb|EGB39725.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H120]
 gi|323959266|gb|EGB54927.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H489]
 gi|323969717|gb|EGB65001.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA007]
 gi|324019674|gb|EGB88893.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 117-3]
 gi|324115514|gb|EGC09455.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E1167]
 gi|331062078|gb|EGI34001.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA271]
 gi|331072415|gb|EGI43748.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H591]
 gi|332083983|gb|EGI89192.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii 5216-82]
 gi|332085302|gb|EGI90476.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 155-74]
 gi|332105263|gb|EGJ08609.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9]
 gi|332345962|gb|AEE59296.1| tRNA (uracil-5-)-methyltransferase TrmA [Escherichia coli UMNK88]
          Length = 366

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|218692255|ref|YP_002400467.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ED1a]
 gi|254789077|sp|B7MR93|TRMA_ECO81 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|218429819|emb|CAR10781.2| tRNA (uracil-5-)-methyltransferase [Escherichia coli ED1a]
          Length = 366

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPFLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|170681986|ref|YP_001746357.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SMS-3-5]
 gi|218707592|ref|YP_002415111.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UMN026]
 gi|293407586|ref|ZP_06651505.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1412]
 gi|298383334|ref|ZP_06992927.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1302]
 gi|300896470|ref|ZP_07114997.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|226705977|sp|B7NFR5|TRMA_ECOLU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705979|sp|B1LNS5|TRMA_ECOSM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|170519704|gb|ACB17882.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SMS-3-5]
 gi|218434689|emb|CAR15622.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UMN026]
 gi|284924066|emb|CBG37165.1| tRNA (uracil-5)-methyltransferase [Escherichia coli 042]
 gi|291425503|gb|EFE98542.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1412]
 gi|298276368|gb|EFI17888.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1302]
 gi|300359663|gb|EFJ75533.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 198-1]
          Length = 366

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|170769705|ref|ZP_02904158.1| tRNA (uracil-5-)-methyltransferase [Escherichia albertii TW07627]
 gi|170121513|gb|EDS90444.1| tRNA (uracil-5-)-methyltransferase [Escherichia albertii TW07627]
          Length = 366

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R++ F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVESFPAASELINQLMTAMIAGVRNNPVLRNKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH IERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKIERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|301048610|ref|ZP_07195623.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|300299530|gb|EFJ55915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 185-1]
          Length = 366

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ + IFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCEAIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|74314467|ref|YP_312886.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei Ss046]
 gi|187731935|ref|YP_001882659.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii CDC 3083-94]
 gi|260858083|ref|YP_003231974.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260870685|ref|YP_003237087.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|123615618|sp|Q3YV11|TRMA_SHISS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705994|sp|B2TWG0|TRMA_SHIB3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|73857944|gb|AAZ90651.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei Ss046]
 gi|187428927|gb|ACD08201.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii CDC 3083-94]
 gi|257756732|dbj|BAI28234.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257767041|dbj|BAI38536.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|320182827|gb|EFW57704.1| tRNA uracil-5--methyltransferase [Shigella flexneri CDC 796-83]
 gi|323155496|gb|EFZ41675.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli EPECa14]
 gi|323167444|gb|EFZ53152.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei 53G]
 gi|323174292|gb|EFZ59918.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli LT-68]
 gi|323177991|gb|EFZ63575.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1180]
 gi|332088253|gb|EGI93373.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii 3594-74]
          Length = 366

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPCILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|168748726|ref|ZP_02773748.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755661|ref|ZP_02780668.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768279|ref|ZP_02793286.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775188|ref|ZP_02800195.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780894|ref|ZP_02805901.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|195937617|ref|ZP_03082999.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808578|ref|ZP_03250915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813900|ref|ZP_03255229.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821447|ref|ZP_03261767.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397508|ref|YP_002273489.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|254795972|ref|YP_003080809.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|226705973|sp|B5Z069|TRMA_ECO5E RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|187769134|gb|EDU32978.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016809|gb|EDU54931.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001468|gb|EDU70454.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357216|gb|EDU75635.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362699|gb|EDU81118.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|208728379|gb|EDZ77980.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735177|gb|EDZ83864.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741570|gb|EDZ89252.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158908|gb|ACI36341.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209751946|gb|ACI74280.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli]
 gi|254595372|gb|ACT74733.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
          Length = 366

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMEC VLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECSVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|82778852|ref|YP_405201.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae Sd197]
 gi|309783924|ref|ZP_07678569.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1617]
 gi|123561308|sp|Q32AE5|TRMA_SHIDS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|81243000|gb|ABB63710.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae Sd197]
 gi|308928295|gb|EFP73757.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1617]
          Length = 366

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LA +FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALAHNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|300916978|ref|ZP_07133676.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300415730|gb|EFJ99040.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 115-1]
          Length = 366

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLA+KV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAKKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAESLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|186972974|pdb|3BT7|A Chain A, Structure Of E. Coli 5-Methyluridine Methyltransferase
           Trma In Complex With 19 Nucleotide T-Arm Analogue
 gi|186972975|pdb|3BT7|B Chain B, Structure Of E. Coli 5-Methyluridine Methyltransferase
           Trma In Complex With 19 Nucleotide T-Arm Analogue
          Length = 369

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 9   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 68

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 69  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 128

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 129 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 188

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 189 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 248

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 249 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 308

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HM+CGVLL  
Sbjct: 309 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMQCGVLLTA 368

Query: 365 K 365
           K
Sbjct: 369 K 369


>gi|311281561|ref|YP_003943792.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae SCF1]
 gi|308750756|gb|ADO50508.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae SCF1]
          Length = 367

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WH+GDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMTPFAAPVPEVFRSPVSHYRMRAEFRLWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q TK+R+R+D F   S LIN LM  ++A ++ EP+LR KLFQ+DYLT+ S+QAIV+L+YH
Sbjct: 66  QATKQRIRVDSFPAASQLINVLMKAVIAGVKDEPVLRHKLFQVDYLTTMSNQAIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L D W+  A RLRDAL A    +QLIGRA KTKI LDRDY+DERL V GR +IYRQ+E
Sbjct: 126 KALGDEWQSAATRLRDALRAANLNVQLIGRATKTKIALDRDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW    T G  GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWAQDVTTGATGDLLELYCGNGNFSLALARNFTRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIAANH++NV+I+RMS++EFTQAM   R+FNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAANHIDNVQIIRMSAEEFTQAMNGVRQFNRLQGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL R
Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHRVERLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|307314707|ref|ZP_07594304.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W]
 gi|306905762|gb|EFN36288.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W]
 gi|315063300|gb|ADT77627.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W]
 gi|323380637|gb|ADX52905.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli KO11]
          Length = 366

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT H+ECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHIECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|26250742|ref|NP_756782.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli CFT073]
 gi|34222850|sp|Q8CXW3|TRMA_ECOL6 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|26111173|gb|AAN83356.1|AE016770_156 tRNA (Uracil-5-)-methyltransferase [Escherichia coli CFT073]
          Length = 366

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+  +QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLRNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|323190169|gb|EFZ75447.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli RN587/1]
          Length = 366

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LI+ LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELIDQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|300986809|ref|ZP_07177799.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|300306386|gb|EFJ60906.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 200-1]
          Length = 366

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D     S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSSPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|307128964|ref|YP_003880980.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii 3937]
 gi|306526493|gb|ADM96423.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii 3937]
          Length = 367

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 241/361 (66%), Positives = 291/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QL EK  RL  MM  F  P   +FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPIDQYDAQLEEKTGRLGAMMAPFDAPAPTVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM  +++ +R EP+LR KLFQIDYL++ S + +V+L+YH
Sbjct: 66  QQTKQRIRVDRFPAASELINRLMPALISALRAEPVLRRKLFQIDYLSTLSGEIVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W++CA  LRD LHA+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 KALDDEWQQCARLLRDQLHAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L+AT+G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAMMNIQMLEWALSATQGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN ++NV+I+RM+++EFTQAM   R+FNRL+ ID+  YR +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLAGYRCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  LS TH I +LALFDQFPYT HMECGVLL +
Sbjct: 306 DDDTVKLVQAYPRILYISCNPETLCANLETLSQTHRISQLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|300937124|ref|ZP_07151982.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300457798|gb|EFK21291.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 366

 Score =  514 bits (1325), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REF+RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFHRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|218551042|ref|YP_002384833.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|226705981|sp|B7LUM8|TRMA_ESCF3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|218358583|emb|CAQ91231.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|325499293|gb|EGC97152.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ECD227]
          Length = 366

 Score =  514 bits (1325), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAGR +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEVLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|281181038|dbj|BAI57368.1| tRNA (uracil-5)-methyltransferase [Escherichia coli SE15]
          Length = 366

 Score =  514 bits (1325), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W + A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDEWCQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|331649822|ref|ZP_08350902.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M605]
 gi|330908290|gb|EGH36809.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli AA86]
 gi|331041455|gb|EGI13605.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M605]
          Length = 366

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W + A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDDWCQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|324111410|gb|EGC05391.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii B253]
          Length = 366

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAGR +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEVLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP +LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPKTLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|227113201|ref|ZP_03826857.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 367

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY+ QLAEK +RLR MM  F  P   +FRS   HYRMRAEF IWHDGD+LYHIMFD
Sbjct: 6   LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH
Sbjct: 66  QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W+E A  LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM+  R+FNRLK ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLKGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++L  +L  LS TH I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLER 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|50123159|ref|YP_052326.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|115305868|sp|Q6CZB4|TRMA_ERWCT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|49613685|emb|CAG77136.1| tRNA (uracil-5)-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 367

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ Y+ QLAEK +RLR MM  F  P   +FRS   HYRMRAEF IWHDGD+LYHIMFD
Sbjct: 6   LPIEDYDDQLAEKTERLRGMMAPFNAPEPAVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM EM+A I+ +P+LR KLFQIDYL++ S + IV+L+YH
Sbjct: 66  QQTKQRIRVDRFPAASELINRLMPEMLAAIQPDPVLRRKLFQIDYLSTLSGEVIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L++ W+E A  LRD+L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RALNEEWQEHARALRDSLTAQGFNLQLIGRATKTKICLDRDYVDECLPVAGRNMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L AT G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIQMLEWALDATAGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM+  R+FNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++L  +L  LS TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLKTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|218701325|ref|YP_002408954.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI39]
 gi|226705974|sp|B7NU35|TRMA_ECO7I RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|218371311|emb|CAR19143.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI39]
          Length = 366

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMSAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L+D WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLNDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REF+RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFHRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|332998875|gb|EGK18469.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-218]
          Length = 362

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/361 (67%), Positives = 289/361 (80%), Gaps = 4/361 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A    +AL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEA----EALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 181

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 182 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 241

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+F+TIFVDPPRSGL
Sbjct: 242 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 301

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 302 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 361

Query: 365 K 365
           K
Sbjct: 362 K 362


>gi|300948246|ref|ZP_07162365.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|300452224|gb|EFK15844.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 116-1]
          Length = 360

 Score =  511 bits (1315), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/355 (67%), Positives = 286/355 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECG
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG 360


>gi|283787354|ref|YP_003367219.1| tRNA (uracil-5)-methyltransferase [Citrobacter rodentium ICC168]
 gi|282950808|emb|CBG90484.1| tRNA (uracil-5)-methyltransferase [Citrobacter rodentium ICC168]
          Length = 366

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/361 (67%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMSAMIAGVRNNPVLRQKLFQIDYLTTMSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+AWR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEAWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  T+G +GDLLELYCGNGNFSL LAR+FD VLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTRGSKGDLLELYCGNGNFSLALARNFDHVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM   REFNRLK +D+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANGIENVQIIRMAAEEFTQAMNGVREFNRLKGVDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP +LC++L  LS TH IERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPQTLCKNLETLSQTHKIERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|291619388|ref|YP_003522130.1| TrmA [Pantoea ananatis LMG 20103]
 gi|291154418|gb|ADD79002.1| TrmA [Pantoea ananatis LMG 20103]
 gi|327395711|dbj|BAK13133.1| tRNA (uracil-5-)-methyltransferase TrmA [Pantoea ananatis AJ13355]
          Length = 367

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L ++QY+ QLAEKV RL  MM  F  P +++FRS   HYRMRAEF IWH+GDDLYHI+FD
Sbjct: 6   LPVEQYDAQLAEKVSRLETMMTPFAAPAVEVFRSPVSHYRMRAEFRIWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+TK+R+R+D F   S LIN +M +MMA IR   LLR KLFQIDYL++ S Q +++L+YH
Sbjct: 66  QETKQRIRVDQFPAASELINQVMPKMMAAIRDNRLLRHKLFQIDYLSTMSHQIVISLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L A    +QLIGRA KTKICLDRDYVDERL VAG+ +IYRQ+E
Sbjct: 126 RKLDEEWQQAASTLRDQLRAEGIDVQLIGRATKTKICLDRDYVDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  T G +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTTGSRGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIAAN V+NV+I+RM+++EFTQAM   R FNRL+ ID+ SY  +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAANQVDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLKSYDCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ TV MVQAYP ILYISCNP +LC +L IL+ TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DEETVKMVQAYPAILYISCNPQTLCDNLRILAQTHDVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|168237752|ref|ZP_02662810.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737076|ref|YP_002117041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249955|ref|YP_002149050.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|226705985|sp|B5F0V3|TRMA_SALA4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705992|sp|B4TQI0|TRMA_SALSV RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|194712578|gb|ACF91799.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197213658|gb|ACH51055.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289385|gb|EDY28750.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 366

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|322613117|gb|EFY10061.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619255|gb|EFY16138.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322626121|gb|EFY22933.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626419|gb|EFY23225.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632467|gb|EFY29215.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635050|gb|EFY31771.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642747|gb|EFY39337.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646428|gb|EFY42939.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648557|gb|EFY45007.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654818|gb|EFY51136.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657285|gb|EFY53565.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662228|gb|EFY58443.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669771|gb|EFY65915.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672034|gb|EFY68149.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675755|gb|EFY71827.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681829|gb|EFY77855.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683976|gb|EFY79985.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193247|gb|EFZ78462.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197605|gb|EFZ82738.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202191|gb|EFZ87246.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207174|gb|EFZ92126.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211376|gb|EFZ96217.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218579|gb|EGA03287.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220939|gb|EGA05371.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226064|gb|EGA10282.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231595|gb|EGA15707.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236903|gb|EGA20974.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239423|gb|EGA23472.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243984|gb|EGA27995.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249347|gb|EGA33264.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250410|gb|EGA34293.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258864|gb|EGA42516.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260888|gb|EGA44488.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265228|gb|EGA48725.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270450|gb|EGA53896.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 366

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|227329571|ref|ZP_03833595.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 367

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY+ QLAEK +RLR MM  F  P   +FRS   HYRMRAEF IWH+GD+LYHIMFD
Sbjct: 6   LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHEGDELYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH
Sbjct: 66  QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W+E A  LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM+  R+FNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++L  +L  LS TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|168262959|ref|ZP_02684932.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|238912269|ref|ZP_04656106.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|205348285|gb|EDZ34916.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 366

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|253686597|ref|YP_003015787.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259547828|sp|C6DHQ1|TRMA_PECCP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|251753175|gb|ACT11251.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 367

 Score =  509 bits (1310), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 242/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY+ QLAEK +RLR MM  F  P   +FRS   HYRMRAEF IWH+GD+LYHIMFD
Sbjct: 6   LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHEGDELYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH
Sbjct: 66  QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W+E A  LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM+  R+FNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++L  +L  LS TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSHNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|161617272|ref|YP_001591237.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|189036044|sp|A9N0H5|TRMA_SALPB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|161366636|gb|ABX70404.1| hypothetical protein SPAB_05114 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 366

 Score =  508 bits (1309), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVSRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|168467481|ref|ZP_02701318.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|200388499|ref|ZP_03215111.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|195630197|gb|EDX48837.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|199605597|gb|EDZ04142.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 366

 Score =  508 bits (1308), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|16767393|ref|NP_463008.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62182588|ref|YP_219005.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167991710|ref|ZP_02572809.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233071|ref|ZP_02658129.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168821519|ref|ZP_02833519.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194469976|ref|ZP_03075960.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197261617|ref|ZP_03161691.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198243648|ref|YP_002218056.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205354295|ref|YP_002228096.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859318|ref|YP_002245969.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|17865778|sp|P22038|TRMA_SALTY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|75479266|sp|Q57H88|TRMA_SALCH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705986|sp|B5FPX9|TRMA_SALDC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705987|sp|B5QXR0|TRMA_SALEP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705988|sp|B5REZ3|TRMA_SALG2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|16422696|gb|AAL22967.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62130221|gb|AAX67924.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194456340|gb|EDX45179.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197239872|gb|EDY22492.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938164|gb|ACH75497.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205274076|emb|CAR39083.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205330014|gb|EDZ16778.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332855|gb|EDZ19619.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341900|gb|EDZ28664.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206711121|emb|CAR35495.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261249244|emb|CBG27106.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996435|gb|ACY91320.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160635|emb|CBW20166.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915245|dbj|BAJ39219.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088533|emb|CBY98292.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225421|gb|EFX50479.1| tRNA Uracil54-C5--methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322717089|gb|EFZ08660.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323132474|gb|ADX19904.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326625849|gb|EGE32194.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629419|gb|EGE35762.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990957|gb|AEF09940.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 366

 Score =  508 bits (1308), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|161505380|ref|YP_001572492.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189036043|sp|A9MHG7|TRMA_SALAR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|160866727|gb|ABX23350.1| hypothetical protein SARI_03534 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 366

 Score =  508 bits (1308), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYDAQLAEKVARLQSMMAPFSGLVPEVFRSPASHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|238794888|ref|ZP_04638487.1| tRNA (uracil-5-)-methyltransferase [Yersinia intermedia ATCC 29909]
 gi|238725763|gb|EEQ17318.1| tRNA (uracil-5-)-methyltransferase [Yersinia intermedia ATCC 29909]
          Length = 367

 Score =  508 bits (1308), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D Y+QQLAEK  RL+ MM  FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDSYDQQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKALELRDQLRAQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  TK   GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDTTKNASGDLLELYCGNGNFSLALARNFARVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN+++NV+I+RMS++EFTQAM   REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMLGVREFNRLKGIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQ YP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQGYPRILYISCNPETLCANLEQLQQTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|167551369|ref|ZP_02345124.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323670|gb|EDZ11509.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 366

 Score =  508 bits (1307), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLKTLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|168244113|ref|ZP_02669045.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448074|ref|YP_002048126.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|226705989|sp|B4TCR0|TRMA_SALHS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|194406378|gb|ACF66597.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205336861|gb|EDZ23625.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 366

 Score =  508 bits (1307), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 239/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQ+DYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQMDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|56415966|ref|YP_153041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364893|ref|YP_002144530.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|81599682|sp|Q5PK68|TRMA_SALPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705991|sp|B5BJN9|TRMA_SALPK RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|56130223|gb|AAV79729.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096370|emb|CAR61975.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 366

 Score =  508 bits (1307), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|292486641|ref|YP_003529511.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora CFBP1430]
 gi|292897878|ref|YP_003537247.1| tRNA (uracil-5)-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291197726|emb|CBJ44821.1| tRNA (uracil-5)-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291552058|emb|CBA19095.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora CFBP1430]
          Length = 367

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/361 (65%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QYE QL EKV RL  MM AF VP +++FRS   HYRMRAEF IWH+GDDLYHI+FD
Sbjct: 6   LPIEQYEDQLTEKVTRLTSMMSAFNVPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LIN LM  ++  +R + +LR KLFQIDYL++ S Q +V+++YH
Sbjct: 66  QQTRERIRVDSFPAASELINRLMPRLINRLRDQHVLRFKLFQIDYLSTVSGQMVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W+  A  LRD L A  + + LIGRA KTKICLD+DYVDERLTV GR + YRQ+E
Sbjct: 126 RKLDEEWQRAATALRDGLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMTYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L +T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRNASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N ++NV+I+RM+++EFTQAM  ER F RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DDETVKMVQAYPCILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|22124241|ref|NP_667664.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM 10]
 gi|45442891|ref|NP_994430.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51594482|ref|YP_068673.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP
           32953]
 gi|108806109|ref|YP_650025.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Antiqua]
 gi|108810222|ref|YP_645989.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516]
 gi|145600770|ref|YP_001164846.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides F]
 gi|150261126|ref|ZP_01917854.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CA88-4125]
 gi|153948502|ref|YP_001399141.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP
           31758]
 gi|162420223|ref|YP_001604758.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Angola]
 gi|165928371|ref|ZP_02224203.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936942|ref|ZP_02225508.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009523|ref|ZP_02230421.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213748|ref|ZP_02239783.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401208|ref|ZP_02306708.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420927|ref|ZP_02312680.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425969|ref|ZP_02317722.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467895|ref|ZP_02332599.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis FV-1]
 gi|170026281|ref|YP_001722786.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186893475|ref|YP_001870587.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930911|ref|YP_002348786.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis CO92]
 gi|229839607|ref|ZP_04459766.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229841692|ref|ZP_04461848.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229896696|ref|ZP_04511861.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides A]
 gi|229904754|ref|ZP_04519865.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516]
 gi|270488737|ref|ZP_06205811.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM D27]
 gi|294505561|ref|YP_003569623.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003]
 gi|20178150|sp|Q8ZAA0|TRMA_YERPE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|116256438|sp|Q66G58|TRMA_YERPS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|123246049|sp|Q1CBU2|TRMA_YERPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|123373576|sp|Q1CNP1|TRMA_YERPN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|171704396|sp|A7FD13|TRMA_YERP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|172045573|sp|A4TRG1|TRMA_YERPP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705996|sp|B2JZF7|TRMA_YERPB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705997|sp|A9R6N8|TRMA_YERPG RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705998|sp|B1JQ46|TRMA_YERPY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|21957006|gb|AAM83915.1|AE013632_3 tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM 10]
 gi|45437758|gb|AAS63307.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51587764|emb|CAH19364.1| tRNA (uracil-5)-methyltransferase [Yersinia pseudotuberculosis IP
           32953]
 gi|108773870|gb|ABG16389.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516]
 gi|108778022|gb|ABG12080.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Antiqua]
 gi|115349522|emb|CAL22496.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CO92]
 gi|145212466|gb|ABP41873.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides F]
 gi|149290534|gb|EDM40611.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CA88-4125]
 gi|152959997|gb|ABS47458.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP
           31758]
 gi|162353038|gb|ABX86986.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Angola]
 gi|165915184|gb|EDR33795.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919601|gb|EDR36934.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991445|gb|EDR43746.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205150|gb|EDR49630.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961056|gb|EDR57077.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049233|gb|EDR60641.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055117|gb|EDR64916.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752815|gb|ACA70333.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186696501|gb|ACC87130.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678872|gb|EEO74977.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516]
 gi|229691031|gb|EEO83084.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695973|gb|EEO86020.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700303|gb|EEO88337.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides A]
 gi|262363628|gb|ACY60349.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis D106004]
 gi|262367558|gb|ACY64115.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis D182038]
 gi|270337241|gb|EFA48018.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM D27]
 gi|294356020|gb|ADE66361.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003]
 gi|320013491|gb|ADV97062.1| tRNA uracil-5--methyltransferase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 367

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/361 (66%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ Y+ QLAEK  RL+ MML FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPIESYDHQLAEKSARLKAMMLPFQAPEPEIFRSPADHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   S LIN LM  +M  IR EPLLR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASRLINRLMDALMTAIRAEPLLRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKALELRDQLRAQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW L  T+G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWALDVTQGATGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN+++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DHETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|317050044|ref|YP_004117692.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. At-9b]
 gi|316951661|gb|ADU71136.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. At-9b]
          Length = 367

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/361 (65%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY+ QLAEKV RL+ MM  F  P +++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPIEQYDAQLAEKVSRLQAMMAPFAAPEVEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM +M+  IR    LR KLFQIDYL++ S+Q +++L+YH
Sbjct: 66  QQTKQRIRVDQFPAASALINQLMPKMINAIRDNRALRHKLFQIDYLSTLSNQIVISLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L++ W+  A  LRDAL A  + +QLIGRA KTKICLDRDY+DERL VAG+ +IYRQ+E
Sbjct: 126 RKLEEEWQLAASALRDALRAEGFDVQLIGRATKTKICLDRDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  T+  +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQNARGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIAANH++NV+I+RM+++EFTQAM   R FNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQFNIAANHIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQAYP ILYISCNP +LC +L+ L+ TH + RLALFDQFPYT HME GVLL R
Sbjct: 306 DAETVKMVQAYPRILYISCNPQTLCDNLATLAETHEVARLALFDQFPYTHHMESGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|300721342|ref|YP_003710613.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627830|emb|CBJ88365.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 366

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/365 (64%), Positives = 295/365 (80%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L  + YE QL EKV RL+ MM  F VP   +FRS   HYRMRAEF IWH+ DDLYH
Sbjct: 1   MQNALPTENYENQLMEKVHRLKGMMSPFSVPEPDVFRSPASHYRMRAEFRIWHEEDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQTK+R+RID F   + LIN++M  ++A ++  P+LR KLFQ+DYL+++S++ IV+
Sbjct: 61  IMFDQQTKQRIRIDQFPVANQLINSMMQAIIAGVKDNPVLRHKLFQVDYLSTRSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L+D WRE AI LR+ L A  + +QLIGRA+KTKI LD DY+DE L+VAG+T+IY
Sbjct: 121 LLYHKKLNDEWREQAIDLRNQLIAEGFDVQLIGRASKTKIMLDHDYIDEELSVAGKTMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA IN+HMLEW +  TK  +GDLLELYCGNGNFSL LA++F+RVLA EIA
Sbjct: 181 RQVENSFTQPNASINIHMLEWAIDITKDSKGDLLELYCGNGNFSLALAQNFERVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA++NIAAN ++NV+I+RMS++EFTQAM  EREFNRL+ ID+ SY+ +TIFVDPP
Sbjct: 241 KPSVAAAQFNIAANQIDNVQIIRMSAEEFTQAMNGEREFNRLQGIDLKSYQCETIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD+ TV MVQAYP ILYISCNP++LC++L  L+ TH + +LALFDQFPYT HMECGV
Sbjct: 301 RSGLDEKTVRMVQAYPRILYISCNPETLCQNLETLTQTHHVSKLALFDQFPYTHHMECGV 360

Query: 361 LLVRK 365
           LL ++
Sbjct: 361 LLEKR 365


>gi|16762314|ref|NP_457931.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143802|ref|NP_807144.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213427062|ref|ZP_03359812.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213584060|ref|ZP_03365886.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213646314|ref|ZP_03376367.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289830047|ref|ZP_06547496.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|20178149|sp|Q8Z313|TRMA_SALTI RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|25512146|pir||AC0935 tRNA (uracil-5)-methyltransferase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504618|emb|CAD09501.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139437|gb|AAO71004.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 366

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|204930249|ref|ZP_03221226.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320653|gb|EDZ05855.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 366

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/361 (66%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWRKAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI ANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNITANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|224585942|ref|YP_002639741.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254789079|sp|C0Q481|TRMA_SALPC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|224470470|gb|ACN48300.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 366

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/361 (66%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL L R+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALTRNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|238799430|ref|ZP_04642858.1| tRNA (uracil-5-)-methyltransferase [Yersinia mollaretii ATCC 43969]
 gi|238716724|gb|EEQ08612.1| tRNA (uracil-5-)-methyltransferase [Yersinia mollaretii ATCC 43969]
          Length = 367

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D YE QLAEK  RL+ MML FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYENQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L  + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQQASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN+++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGAREFNRLKGIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGV L +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVWLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|188532302|ref|YP_001906099.1| tRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|226705980|sp|B2VGA5|TRMA_ERWT9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|188027344|emb|CAO95189.1| tRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 367

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/361 (65%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ YE QLAEKV RL  MM AF  P +++FRS   HYRMRAEF IWH+GDDLYHI+FD
Sbjct: 6   LPIEHYEDQLAEKVTRLTTMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LIN LM  ++  IR + LLR KLFQ+DYL++ S Q +V+++YH
Sbjct: 66  QQTRERIRVDSFPAASELINRLMPRLIEKIRDQRLLRFKLFQVDYLSTVSGQIVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD+L A  + + LIGRA KTKICLD+DYVDERLTV GR ++YRQ+E
Sbjct: 126 RKLDEEWQQAAAALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMVYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L +T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRHSAGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N ++NV+I+RM+++EFTQAM  ER F RL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERSFRRLEGIDLTRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV MVQAYP ILYISCNP +LC +L+ LSTTH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DDETVKMVQAYPRILYISCNPQTLCENLTALSTTHDVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|290477206|ref|YP_003470123.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289176556|emb|CBJ83365.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 366

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/365 (64%), Positives = 288/365 (78%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L  + YE QL EKV RL+ MM+ F  P  ++FRS   HYRMRAEF IWH+ DDLYH
Sbjct: 1   MQNVLPTEDYENQLMEKVHRLKGMMMPFSAPEPEVFRSPASHYRMRAEFRIWHEQDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQTK+R+RID F   + LIN +M  ++A ++   LLR KLFQ+DYL++ S++ IV+
Sbjct: 61  IMFDQQTKQRIRIDQFPVANELINQMMQSIIAGVKDNSLLRHKLFQVDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L+D WRE AI LRD L A  + +QLIGRA+KTKI LD DY+DE L +AG+T+IY
Sbjct: 121 LLYHKKLNDEWREHAITLRDQLKANGFDVQLIGRASKTKIILDHDYIDEELPIAGKTMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA IN HMLEW +  TKG +GDLLELYCGNGNFSL LA++FDRVLA EIA
Sbjct: 181 RQVENSFTQPNASINTHMLEWAVGITKGAKGDLLELYCGNGNFSLALAQNFDRVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA++NI AN ++NV+I+RMS++EFTQAM  EREFNRL  ID+ SY+ +TIFVDPP
Sbjct: 241 KPSVAAAQFNIEANQIDNVQIIRMSAEEFTQAMNGEREFNRLHGIDLKSYQCETIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLDDATV MVQ Y  ILYISCNP++L ++L  L+ TH I RLALFDQFPYT HMECGV
Sbjct: 301 RSGLDDATVKMVQGYSQILYISCNPETLSQNLETLTQTHKISRLALFDQFPYTHHMECGV 360

Query: 361 LLVRK 365
           LL ++
Sbjct: 361 LLEKR 365


>gi|238921674|ref|YP_002935189.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella ictaluri 93-146]
 gi|259547825|sp|C5BC48|TRMA_EDWI9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|238871243|gb|ACR70954.1| tRNA (uracil-5-)-methyltransferase, putative [Edwardsiella ictaluri
           93-146]
          Length = 366

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  + Y+ QL+EK+ RL QMM  F  P +Q FRS   HYRMRAEF IWHDGDDLYHIMFD
Sbjct: 6   LPTEHYDDQLSEKIHRLEQMMQPFGAPAVQPFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            Q+K+R+R+D F   S LIN LM  ++  +R  P LR KLFQIDYL+++S Q IV+L+YH
Sbjct: 66  PQSKQRIRVDQFPAASELINRLMPLLLDALRPNPTLRHKLFQIDYLSTRSGQIIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAW++ A  LRDAL  + + IQLIGRA+KTKICLD+D+VDE L VAGR +IYRQ+E
Sbjct: 126 RTLDDAWKQAAEALRDALRGQGFAIQLIGRASKTKICLDQDWVDEVLPVAGRQMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT+G +GDLLELYCGNGNFSL LA +F +VLA EIAKPSV
Sbjct: 186 NSFTQPNAAINIQMLEWALDATRGAEGDLLELYCGNGNFSLALAHNFRQVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN +NNV+I+RMS++EFTQAM+  R FNRL+ ID+HSY   TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQINNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYECNTIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T+GMVQ YP+ILYISCNP +LC +L  L+ +H I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DTETLGMVQGYPNILYISCNPLTLCDNLHTLNQSHRITRLALFDQFPYTHHMECGVLLER 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|312170705|emb|CBX78968.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 367

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/361 (65%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QYE QL EKV RL  MM AF VP +++FRS   HYRMRAEF IWH+GDDLYHI+FD
Sbjct: 6   LPIEQYEDQLTEKVTRLTSMMSAFNVPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+T+ER+R+D F   S LIN LM  ++  +R + +LR KLFQIDYL++ S Q +V+++YH
Sbjct: 66  QRTRERIRVDSFPAASELINRLMPRLINRLRDQHVLRFKLFQIDYLSTVSGQMVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W+  A  LRD L A  + + LIGRA KTKICLD+DYVDERLTV GR + YRQ+E
Sbjct: 126 RKLDEEWQRAATALRDGLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMTYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L +T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRNASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N ++NV+I+RM+++EFTQAM  ER F RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DDETVKMVQAYPCILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|242241178|ref|YP_002989359.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech703]
 gi|262827665|sp|C6C5A0|TRMA_DICDC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|242133235|gb|ACS87537.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech703]
          Length = 367

 Score =  505 bits (1300), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/363 (64%), Positives = 289/363 (79%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
            TL IDQY+ QLAEK  RL+ MM ++  P  Q+FRS   HYRMRAEF IWHDGDDLYHIM
Sbjct: 4   STLPIDQYDAQLAEKTGRLKAMMASYHAPEPQVFRSPVSHYRMRAEFRIWHDGDDLYHIM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FDQQTK R+R+D F   S LIN LM  ++  +R    LR KLFQIDYL++ S++ +V+L+
Sbjct: 64  FDQQTKHRIRVDQFPVASELINRLMPALLNALRPHLTLRRKLFQIDYLSTMSNEIVVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD WR+ AI LRD L  + + +QLIGRA KTKICLD DYVDE L VAG+ ++YRQ
Sbjct: 124 YHKTLDDEWRQQAIALRDQLRQQGFNLQLIGRATKTKICLDHDYVDECLPVAGKQMVYRQ 183

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           +ENSFTQPNA +N+ MLEW L+ T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKP
Sbjct: 184 VENSFTQPNAAMNIQMLEWALSVTEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKP 243

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV+AA+YNI AN + NV+I+RM+++EFTQAMR  R+FNRL+ ID+ SYR  TIFVDPPRS
Sbjct: 244 SVQAAQYNITANQIGNVQIIRMAAEEFTQAMRGVRQFNRLEGIDLASYRCDTIFVDPPRS 303

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD+ TV +VQ YP ILYISCNP++LC +L+ L+ TH + +LALFDQFPYT HMECGVLL
Sbjct: 304 GLDEETVRLVQEYPRILYISCNPETLCANLATLTQTHRVSQLALFDQFPYTHHMECGVLL 363

Query: 363 VRK 365
            ++
Sbjct: 364 EKR 366


>gi|318603892|emb|CBY25390.1| tRNA (Uracil54-C5-)-methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 367

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 242/361 (67%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D YE QLAEK  RL+ MM  FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  I  EP+LR KLFQIDYL++ S + + TL+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSALMTAIIAEPILRRKLFQIDYLSTLSGKLLATLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L  + + +QLIGRA+KTKI LD DYVDE L VAGR +IYRQIE
Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYVDEVLPVAGRDMIYRQIE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|157147235|ref|YP_001454554.1| tRNA (uracil-5-)-methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|172045587|sp|A8AKV5|TRMA_CITK8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157084440|gb|ABV14118.1| hypothetical protein CKO_03026 [Citrobacter koseri ATCC BAA-895]
          Length = 366

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 238/361 (65%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHI+F+
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMAPFSDLVPEVFRSPASHYRMRAEFRLWHDGDDLYHIIFE 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+  +R   +LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIEGVRHNRVLRHKLFQIDYLTTMSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAETLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L ATK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDATKASKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH + RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|123440536|ref|YP_001004530.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|262827716|sp|A1JI40|TRMA_YERE8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|122087497|emb|CAL10278.1| tRNA (uracil-5)-methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 367

 Score =  504 bits (1299), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/361 (66%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D YE QLAEK  RL+ MM  FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + + TL+YH
Sbjct: 66  QQTKLRIRVEQFPVASLLINRLMSALMTAIRAEPILRHKLFQIDYLSTLSGKLLATLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L  + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQYTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|270265153|ref|ZP_06193415.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera 4Rx13]
 gi|270040787|gb|EFA13889.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera 4Rx13]
          Length = 367

 Score =  504 bits (1298), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 235/362 (64%), Positives = 292/362 (80%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L I++Y+ QLAEK  RL+ +M  F  P  ++FRS+  HYRMRAEF IWHD D++YHIMF
Sbjct: 5   NLPIERYDDQLAEKTARLKTLMSPFTAPEPEVFRSQVEHYRMRAEFRIWHDEDEMYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQTK+R+R+D F   S LIN LM  ++A I+ EP+LR KLFQIDYL+++S + I +L+Y
Sbjct: 65  DQQTKQRIRVDRFPAASELINRLMSALIAAIKPEPILRHKLFQIDYLSTRSGKIIASLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LD+AW++ A +LRD+L A+ + +QLIGRA+K KI LD+DYVDE L VAGR +IYRQ+
Sbjct: 125 HRKLDEAWQQQAEKLRDSLRAQGFDLQLIGRASKMKIMLDQDYVDEVLPVAGRDMIYRQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW L  T G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS
Sbjct: 185 ENSFTQPNAAMNIQMLEWALDVTTGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA+YNIAANH++NV+I+RM++++FTQAM   REFNRLK ID+ SY  +TIFVDPPRSG
Sbjct: 245 VAAAQYNIAANHIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSYNCETIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD TV MVQAYP ILYISCNP++LC +L  L  TH + RLALFDQFPYT HMECGVLL 
Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLCANLETLQETHRVSRLALFDQFPYTHHMECGVLLE 364

Query: 364 RK 365
           ++
Sbjct: 365 KR 366


>gi|332159760|ref|YP_004296337.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663990|gb|ADZ40634.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861647|emb|CBX71825.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica W22703]
          Length = 367

 Score =  504 bits (1298), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/361 (66%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D YE QLAEK  RL+ MM  FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + + TL+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLLATLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  L+D L  + + +QLIGRA+KTKI LD DYVDE L VAGR +IYRQIE
Sbjct: 126 RPLDEEWQQKARELQDQLREQGFDLQLIGRASKTKIMLDHDYVDEVLPVAGRDMIYRQIE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           N FTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NCFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|238764509|ref|ZP_04625457.1| tRNA (uracil-5-)-methyltransferase [Yersinia kristensenii ATCC
           33638]
 gi|238697321|gb|EEP90090.1| tRNA (uracil-5-)-methyltransferase [Yersinia kristensenii ATCC
           33638]
          Length = 390

 Score =  504 bits (1298), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 240/361 (66%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D YE QLAEK  RL+ MM  FQ P+ Q+FRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYEHQLAEKSARLQAMMSPFQAPDPQVFRSPAQHYRMRAEFRVWHDDDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSVLMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L  + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKYIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 E 366


>gi|253991701|ref|YP_003043057.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783151|emb|CAQ86316.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica]
          Length = 366

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 232/364 (63%), Positives = 292/364 (80%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L  + YEQQL EKV RL+ MM +FQ P  ++FRS   HYRMRAEF IWH+ DDLYH
Sbjct: 1   MQNPLPTESYEQQLTEKVSRLKSMMASFQTPEPEVFRSPVSHYRMRAEFRIWHEQDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQTK+R+RI+ F   S LIN +M  ++ +IR E  LR KLFQIDYL++ S++ +V+
Sbjct: 61  IMFDQQTKQRVRINQFPVASNLINKMMEGLIDSIRSEQTLRHKLFQIDYLSTCSNKILVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L D W + A++LR+ L  + + ++LIGRA KTKI LD DY+DE L+VAGR +IY
Sbjct: 121 LLYHKKLGDEWTQQALKLRNELRNKGFDVELIGRAAKTKIMLDHDYIDEVLSVAGREMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+HMLEW +  TKG +GDLLELYCGNGNFSL LA++F++VLA EIA
Sbjct: 181 RQVENSFTQPNASVNIHMLEWAIDITKGSKGDLLELYCGNGNFSLALAQNFEKVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNI AN+++NV+I+RMS++EFTQAM  EREFNRL++ID+ SY+ +TIFVDPP
Sbjct: 241 KPSVAAAQYNITANNIDNVQIIRMSAEEFTQAMNGEREFNRLQNIDLKSYQCETIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD+ TV MVQAYP ILYISCNP++LC +L  L+ TH I RLALFDQFPYT HMECGV
Sbjct: 301 RSGLDEKTVKMVQAYPRILYISCNPETLCHNLETLTQTHKISRLALFDQFPYTHHMECGV 360

Query: 361 LLVR 364
           LL +
Sbjct: 361 LLEK 364


>gi|194442689|ref|YP_002043391.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|226705990|sp|B4T0X5|TRMA_SALNS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|194401352|gb|ACF61574.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 366

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/361 (65%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQ+DYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQMDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFT AM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTLAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|238785773|ref|ZP_04629745.1| tRNA (uracil-5-)-methyltransferase [Yersinia bercovieri ATCC 43970]
 gi|238713307|gb|EEQ05347.1| tRNA (uracil-5-)-methyltransferase [Yersinia bercovieri ATCC 43970]
          Length = 367

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 239/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D Y+ QLAEK  RL+ MML FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYDHQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDDDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A+ LRD L  + + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKALELRDQLREQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN+++NV+I+RMS++EFTQAM+  REF RLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFTRLKGIDLKSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|294634277|ref|ZP_06712819.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda ATCC 23685]
 gi|291092317|gb|EFE24878.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda ATCC 23685]
          Length = 372

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/361 (65%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  + Y++QL EK+ RL QMM  F  P +Q FRS   HYRMRAEF IWH+GDDLYHIMFD
Sbjct: 12  LPTEHYDEQLQEKIHRLAQMMQPFGAPAVQAFRSPASHYRMRAEFRIWHEGDDLYHIMFD 71

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            QTK R+R+D F   S LIN LM  ++  +R  P LR KLFQIDYL+++S+QAI++L+YH
Sbjct: 72  AQTKRRIRVDQFPAASELINRLMPLLIDALRPNPTLRHKLFQIDYLSTRSNQAIISLLYH 131

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAWR  A  LR+ L A+ Y +QLIGRA+KTKICLDRD+VDE L +AGR +IYRQ+E
Sbjct: 132 RPLDDAWRHAAQTLRNQLQAQGYDVQLIGRASKTKICLDRDWVDEVLPIAGRDMIYRQVE 191

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT+  +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 192 NSFTQPNAAINIQMLEWALDATQDARGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 251

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI AN ++NV+I+RMS++EFTQAM+  R FNRL+ ID+HSY   TIFVDPPRSGL
Sbjct: 252 AAAQYNITANQIDNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYACNTIFVDPPRSGL 311

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T+ MVQ YP ILYISCNP++LC +L  LS +H + RLALFDQFPYT HMECGVLL R
Sbjct: 312 DAETLNMVQGYPQILYISCNPETLCANLQTLSQSHRMTRLALFDQFPYTHHMECGVLLER 371

Query: 365 K 365
           +
Sbjct: 372 R 372


>gi|238789624|ref|ZP_04633408.1| tRNA (uracil-5-)-methyltransferase [Yersinia frederiksenii ATCC
           33641]
 gi|238722377|gb|EEQ14033.1| tRNA (uracil-5-)-methyltransferase [Yersinia frederiksenii ATCC
           33641]
          Length = 367

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/361 (65%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D Y+ QLAEK  RL+ MM  FQ P  ++FRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYDHQLAEKSARLQAMMSPFQAPAPEVFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   S+LIN LM  +M  IR EP+LR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASVLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A+ LRD L  + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKALELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN+++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEQ 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|283834733|ref|ZP_06354474.1| tRNA (uracil-5-)-methyltransferase [Citrobacter youngae ATCC 29220]
 gi|291069663|gb|EFE07772.1| tRNA (uracil-5-)-methyltransferase [Citrobacter youngae ATCC 29220]
          Length = 366

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/361 (64%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ +M  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSLMTPFYAQAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            QTK R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ SD+A+V+++YH
Sbjct: 66  SQTKRRIRVDSFPAASELINTLMTAMIEGVRNNPVLRHKLFQIDYLTTLSDRAVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW +  T+G +GDLLELYCGNGNFSL LA++F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWAIDVTRGSKGDLLELYCGNGNFSLALAQNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN ++NV+I+RM+++EFTQAM   REFNRL  ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVREFNRLLGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP I+YISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL +
Sbjct: 306 DSETEKMVQAYPRIMYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTK 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|157373003|ref|YP_001480992.1| tRNA (uracil-5-)-methyltransferase [Serratia proteamaculans 568]
 gi|172047791|sp|A8GL74|TRMA_SERP5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157324767|gb|ABV43864.1| tRNA (uracil-5-)-methyltransferase [Serratia proteamaculans 568]
          Length = 367

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/362 (64%), Positives = 289/362 (79%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L I++Y+ QLAEK  RL+ +M  F  P  ++FRS   HYRMRAEF IWHD D++YHIMF
Sbjct: 5   NLPIERYDDQLAEKTARLKTLMSPFTAPEPEVFRSPVSHYRMRAEFRIWHDEDEMYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQTK+R+R+D F   S LIN LM  ++A I+ EP+LR KLFQIDYL+++S + I +L+Y
Sbjct: 65  DQQTKQRIRVDKFPAASELINRLMSALIAAIKPEPILRRKLFQIDYLSTRSGKIIASLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LDD W++ A +LRD L A+ + +QLIGRA+K KI LD+DYVDE L VAGR +IYRQ+
Sbjct: 125 HRKLDDEWQQQAEKLRDDLRAQGFDLQLIGRASKMKIMLDQDYVDEVLPVAGRDMIYRQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW L  T G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS
Sbjct: 185 ENSFTQPNAALNIQMLEWALDVTTGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA+YNIAAN ++NV+I+RM++++FTQAM   REFNRLK ID+ SY  +TIFVDPPRSG
Sbjct: 245 VAAAQYNIAANQIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSYNCETIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD TV MVQAYP ILYISCNP++LC +L  L  TH+I RLALFDQFPYT HMECGVLL 
Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLCANLETLQQTHSISRLALFDQFPYTHHMECGVLLE 364

Query: 364 RK 365
           ++
Sbjct: 365 KR 366


>gi|259906846|ref|YP_002647202.1| tRNA (uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224962468|emb|CAX53923.1| tRNA (Uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283476638|emb|CAY72466.1| tRNA (uracil-5-)-methyltransferase [Erwinia pyrifoliae DSM 12163]
          Length = 367

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/361 (65%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QYE QL EKV RL  MM AF  P +++FRS   HYRMRAEF IWH+GDDLYHI+FD
Sbjct: 6   LPIEQYEDQLTEKVTRLTSMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LIN LM  ++  IR + +LR KLFQIDYL++ S Q +V+++YH
Sbjct: 66  QQTRERIRVDNFPAASELINRLMPRLIDRIRDQRVLRFKLFQIDYLSTVSGQMVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD+L A  + + LIGRA KTKICLD+DYVDERLTV G  + YRQ+E
Sbjct: 126 RKLDEEWQQAAKALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGHEITYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L +T+  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRHARGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N + NV+I+RM+++EFTQAM  ER F RL+ ID+ SY+ +T+FVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIENVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETLFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DDETVKMVQAYPRILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|310766062|gb|ADP11012.1| tRNA (uracil-5-)-methyltransferase [Erwinia sp. Ejp617]
          Length = 367

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/363 (64%), Positives = 287/363 (79%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           G L I+QYE QL EKV RL  MM AF  P +++FRS   HYRMRAEF IWH+GDDLYHI+
Sbjct: 4   GQLPIEQYEDQLTEKVTRLTSMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHII 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FDQQT+ER+R+D F   S LIN +M  ++  IR + +LR KLFQIDYL++ S Q +V+++
Sbjct: 64  FDQQTRERIRVDSFPAASELINRVMPRLIDRIRDQRVLRFKLFQIDYLSTVSGQMVVSML 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W++ A  LRD+L A  + + LIGRA KTKICLD+DYVDERL V G  + YRQ
Sbjct: 124 YHRKLDEEWQQAATALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLIVDGHEMTYRQ 183

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           +ENSFTQPNA +NV MLEW L +T+  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKP
Sbjct: 184 VENSFTQPNAAVNVKMLEWALDSTRHARGDLLELYCGNGNFSLALARNFNRVLATEIAKP 243

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV +A+YNIA N + NV+I+RM+++EFTQAM  ER F RL+ ID+ SY+ +T+FVDPPRS
Sbjct: 244 SVASAQYNIAVNQIENVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETLFVDPPRS 303

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLDD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL
Sbjct: 304 GLDDETVKMVQAYPRILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLL 363

Query: 363 VRK 365
            R+
Sbjct: 364 TRR 366


>gi|271502435|ref|YP_003335461.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech586]
 gi|270345990|gb|ACZ78755.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech586]
          Length = 367

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/361 (65%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QL EK  RL  MM  F  P   +FRS   HYRMRAEF IWHDGDDLYHIMFD
Sbjct: 6   LPIDQYDAQLEEKTGRLGAMMAPFDAPAPVVFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM  ++  +R EP+LR KLFQIDYL++ S +  V+L+YH
Sbjct: 66  QQTKQRIRVDQFPAASELINRLMPVLLNALRAEPVLRRKLFQIDYLSTLSGEIAVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W++ A  L D L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 KALDDEWQQQARLLCDGLRAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L+ T+G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAMMNIQMLEWALSVTQGATGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN ++NV+I+RM+++EFTQAM   R+FNRL+ ID+ SYR +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMTGVRQFNRLQGIDLKSYRCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ TV +VQAYP ILYISCNP++LC +L  LS TH I +LALFDQFPYT HMECGVLL +
Sbjct: 306 DNETVKLVQAYPRILYISCNPETLCANLETLSQTHQISQLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|251787782|ref|YP_003002503.1| tRNA (uracil-5-)-methyltransferase [Dickeya zeae Ech1591]
 gi|262827675|sp|C6CG41|TRMA_DICZE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|247536403|gb|ACT05024.1| tRNA (uracil-5-)-methyltransferase [Dickeya zeae Ech1591]
          Length = 367

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/361 (65%), Positives = 284/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QL EK  RL  MM  F  P   +FRS   HYRMRAEF IWHDGDDLYHIMFD
Sbjct: 6   LPIDQYDAQLEEKTGRLGAMMAPFDAPAPAVFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM  ++  +R EP+LR KLFQ+DYL++ S +  V+L+YH
Sbjct: 66  QQTKQRIRVDQFPAASELINRLMPVLLNALRAEPVLRRKLFQLDYLSTLSGEIAVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  L D L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 KALDDEWRQRARELCDELRAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L+ T+G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAMMNIQMLEWALSVTQGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN ++NV+I+RM+++EFTQAM   R+FNRL+ ID+  YR +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLAGYRCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD T  +VQAYP ILYISCNP++LC +L  LS TH I +LALFDQFPYT HMECGVLL +
Sbjct: 306 DDGTAKLVQAYPRILYISCNPETLCANLETLSQTHRISQLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|304398951|ref|ZP_07380820.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. aB]
 gi|304353411|gb|EFM17789.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. aB]
          Length = 367

 Score =  501 bits (1291), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/361 (65%), Positives = 283/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ Y+ QLAEKV RL  MM  F  P++++FRS   HYRMRAEF +WHDGDD+YHI+FD
Sbjct: 6   LPIEDYDAQLAEKVSRLETMMTPFAAPDVEVFRSPVSHYRMRAEFRLWHDGDDIYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LIN LM +M+A IR    LR KLFQIDYL++ S+Q +++L+YH
Sbjct: 66  QQTRERIRVDQFPAASQLINQLMPKMIAAIRDNRTLRHKLFQIDYLSTMSNQIVISLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDD W++ A  LRD L A    +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RKLDDEWQQAAAALRDQLRAEGLDVQLIGRATKTKICLDRDYVDECLPVAGREIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  T+  QGDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQDSQGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N ++NV+I+RM+++EFTQAM   R FNRL+ ID+ SY  +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLTSYECETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ TV MVQAYP ILYISCNP +L  +L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DEETVKMVQAYPRILYISCNPQTLSDNLQTLSETHDVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|238760129|ref|ZP_04621277.1| tRNA (uracil-5-)-methyltransferase [Yersinia aldovae ATCC 35236]
 gi|238701627|gb|EEP94196.1| tRNA (uracil-5-)-methyltransferase [Yersinia aldovae ATCC 35236]
          Length = 367

 Score =  501 bits (1290), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 237/361 (65%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D Y+QQLAEK  RL+ MM  FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDSYDQQLAEKSARLQAMMSPFQAPAAEIFRSPVEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   +LLIN+LM  +M  IR EPLLR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVANLLINSLMSVLMTAIRAEPLLRRKLFQIDYLSTMSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKALVLRDQLRAQGFDVQLIGRAAKTKIMLDHDYIDEVLPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQNASGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI+AN+++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNISANNIDNVQIIRMSAEEFTQAMQGIREFNRLKGIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD T+ MVQ YP ILYISCN ++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETLKMVQGYPRILYISCNLETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|300714766|ref|YP_003739569.1| tRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661]
 gi|299060602|emb|CAX57709.1| tRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661]
          Length = 366

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/361 (63%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ Y+ QL EKV RL+ +M  F  P + +FRS   HYRMRAEF +WH+GDDLYHI+FD
Sbjct: 6   LPIEHYDAQLEEKVTRLQTLMTPFAAPEVDVFRSPVSHYRMRAEFRLWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LINALM  ++A +R    LR KLFQ+DYL++ S+Q +V+++YH
Sbjct: 66  QQTRERIRVDSFPAASQLINALMPRLIAAVRDNKTLRHKLFQVDYLSTLSNQIVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L + W++ A  LRDAL A  + +QLIGRA KTKICLDRDYVDE L VAG+ +IYRQ+E
Sbjct: 126 RALTEEWQQEAEALRDALRAEGFDLQLIGRATKTKICLDRDYVDECLPVAGKDIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSSGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N+++NV+I+RMS++EFT+AM+ +R+F RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNNIDNVQIIRMSAEEFTEAMKGKRQFRRLEGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQAYP ILYISCNP +LC +L+ LS THT+E+LALFDQFPYT HMECGVLL R
Sbjct: 306 DADTVKMVQAYPRILYISCNPQTLCENLATLSETHTVEKLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|308188584|ref|YP_003932715.1| tRNA (uracil-5-)-methyltransferase [Pantoea vagans C9-1]
 gi|308059094|gb|ADO11266.1| tRNA (uracil-5-)-methyltransferase [Pantoea vagans C9-1]
          Length = 367

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/361 (65%), Positives = 283/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I++Y+ QLAEKV RL  MM  F  P++++FRS   HYRMRAEF +WHDGDD+YHI+FD
Sbjct: 6   LPIEEYDAQLAEKVSRLETMMTPFAAPDVEVFRSPVSHYRMRAEFRLWHDGDDIYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LIN LM +M+A IR    LR KLFQIDYL++ S+Q +++L+YH
Sbjct: 66  QQTRERIRVDQFPAASQLINQLMPKMIAAIRDNRTLRHKLFQIDYLSTMSNQIVISLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDD W + A  LRD L A    +QLIGRA KTKICLDRD+VDE L VAGR +IYRQ+E
Sbjct: 126 RKLDDEWLQAAAALRDQLRAEGLDVQLIGRATKTKICLDRDFVDECLPVAGREIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  T+  QGDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQDSQGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N ++NV+I+RM+++EFTQAM   R FNRL+ ID+ SY  +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLTSYECETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ TV MVQAYP ILYISCNP +L  +L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DEETVKMVQAYPRILYISCNPQTLSDNLQTLSETHEVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|261819553|ref|YP_003257659.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261603566|gb|ACX86052.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium wasabiae WPP163]
          Length = 367

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/361 (65%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ Y+ QLAEK +RLR MM  F  P   +FRS   HYRMRAEF IWHDGD+LYHIMFD
Sbjct: 6   LPIEDYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM +++A I+ + +LR KLFQIDYL++ S + IV+L+YH
Sbjct: 66  QQTKQRIRVDKFPAASELINRLMPKLLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L++ W+E A  LRD+L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RPLNEEWQEHACALRDSLTAQGFNLQLIGRATKTKICLDRDYVDECLPVAGRNMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L AT   +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIKMLEWALDATASSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI AN + NV+I+RM+++EFTQAM+  R+F RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNITANQIENVQIIRMAAEEFTQAMQGVRQFKRLQGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++L  +L  LS TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|237728078|ref|ZP_04558559.1| tRNA (uracil-5-)-methyltransferase [Citrobacter sp. 30_2]
 gi|226910335|gb|EEH96253.1| tRNA (uracil-5-)-methyltransferase [Citrobacter sp. 30_2]
          Length = 366

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/361 (64%), Positives = 284/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ +M  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSLMTPFYAQAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            QTK R+R+D F   S LIN LM  M+  +R   +LR KLFQIDYLT+ S QA+V+++YH
Sbjct: 66  SQTKNRIRVDSFPAASELINTLMTAMIEGVRNNYVLRHKLFQIDYLTTLSGQAVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAKNLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW +  T+G +GDLLELYCGNGNFSL LA++F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWAIDVTRGSKGDLLELYCGNGNFSLALAQNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH + RLALFDQFPYT HMECGVLL +
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVSRLALFDQFPYTHHMECGVLLTK 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|269140813|ref|YP_003297514.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda EIB202]
 gi|267986474|gb|ACY86303.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda EIB202]
 gi|304560573|gb|ADM43237.1| tRNA (Uracil54-C5-)-methyltransferase [Edwardsiella tarda FL6-60]
          Length = 366

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/361 (65%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  + Y+ QL+EK+ RL QMM  F  P +Q FRS   HYRMRAEF IWHDGDDLYHIMFD
Sbjct: 6   LPTEHYDDQLSEKIHRLEQMMQPFGAPAVQAFRSPASHYRMRAEFRIWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            Q+K+R+R+D F   S LIN LM  ++  +R  P LR KLFQIDYL+++S Q IV+L+YH
Sbjct: 66  PQSKQRIRVDRFPAASELINRLMPLLLDALRPNPTLRHKLFQIDYLSTRSGQIIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAW++ A  LRDAL  + + IQLIGRA+KTKICLD+D+VDE L VAGR +IYRQ+E
Sbjct: 126 RALDDAWKQAAEALRDALRGQGFAIQLIGRASKTKICLDQDWVDEVLPVAGRQMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT+G  GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAINIQMLEWALDATRGAVGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI+AN ++NV+I+RMS++EFTQAM+  R FNRL+ ID+HSY   TIFVDPPRSGL
Sbjct: 246 AAAQYNISANQIDNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYECNTIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T+ MVQ Y +ILYISCNP +LC +L  L+ +H I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DTDTLSMVQGYQNILYISCNPLTLCDNLHTLTQSHRITRLALFDQFPYTHHMECGVLLER 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|238754702|ref|ZP_04616054.1| tRNA (uracil-5-)-methyltransferase [Yersinia ruckeri ATCC 29473]
 gi|238707010|gb|EEP99375.1| tRNA (uracil-5-)-methyltransferase [Yersinia ruckeri ATCC 29473]
          Length = 367

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/361 (64%), Positives = 284/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  + Y+ QLAEK+  L++MM  F+ P  ++FRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTENYDHQLAEKIASLKEMMSPFKAPEPEVFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q TK+R+R++ F   S+LIN LM  +M  IR +P+LR KLFQIDYL+++S + I +L+YH
Sbjct: 66  QHTKQRIRVEQFPVASVLINRLMSALMTAIRAQPILRRKLFQIDYLSTRSGKIIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ AI LRD L    + +QLIGRA KTKI LD DYVDE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQHAIALRDQLRTEGFDLQLIGRAAKTKIMLDNDYVDEILPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW L  TK   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWALDVTKDASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIAANH++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQFNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLQSYHCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD T+ MVQ YP ILYISCNP++L  +L  L  THTI RLALFDQFPYT HMECGV L +
Sbjct: 306 DDETIKMVQGYPRILYISCNPETLSANLEQLQHTHTISRLALFDQFPYTHHMECGVWLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|238750874|ref|ZP_04612372.1| tRNA (uracil-5-)-methyltransferase [Yersinia rohdei ATCC 43380]
 gi|238711018|gb|EEQ03238.1| tRNA (uracil-5-)-methyltransferase [Yersinia rohdei ATCC 43380]
          Length = 367

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/356 (65%), Positives = 283/356 (79%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YE QLAEK  RL+ MML FQ P  +IFRS   HYRMRAEF +WHD  DLYHIMFDQQTK+
Sbjct: 11  YEHQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDEGDLYHIMFDQQTKQ 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           R+R++ F   S LIN+LM  +M  IR EP+LR KLFQIDYL++ S + + +L+YHR LD+
Sbjct: 71  RIRVEQFPVASRLINSLMNVLMTAIRAEPILRRKLFQIDYLSTLSGKLVASLLYHRQLDE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W++ A  LRD L A+ + +QLIGRA+KTKI LD DY+DE L +AGR +IYRQ+ENSFTQ
Sbjct: 131 EWQQKARELRDQLRAQGFDLQLIGRASKTKIMLDHDYIDEVLPIAGREMIYRQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV AA+Y
Sbjct: 191 PNAAVNIHMLEWAIDVTQDASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSVAAAQY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NIAANH++NV+I+RMS++EFTQAM+  REF RL+ ID+ SY  +TIFVDPPRSGLDD TV
Sbjct: 251 NIAANHIDNVQIIRMSAEEFTQAMQGVREFRRLQGIDLSSYNCETIFVDPPRSGLDDETV 310

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ YP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL ++
Sbjct: 311 KLVQTYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEKR 366


>gi|293393499|ref|ZP_06637809.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera DSM 4582]
 gi|291423834|gb|EFE97053.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera DSM 4582]
          Length = 367

 Score =  491 bits (1263), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 234/362 (64%), Positives = 283/362 (78%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L I++Y++QL EK  RL  MM  F  P  ++FRS   HYRMRAEF IWHD D++YHIMF
Sbjct: 5   NLPIERYDEQLTEKTQRLASMMSPFGAPEPEVFRSPVSHYRMRAEFRIWHDDDEMYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQTK+R+R+D F   S LIN LM  ++A I+ +P+LR KLFQIDYL+++S + I +L+Y
Sbjct: 65  DQQTKQRIRVDRFPAASELINRLMTALIAAIKPQPVLRRKLFQIDYLSTRSGKIIASLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LDD W+  A +LRD L A+ + +QLIGRA+K KI LD DY+DE L VAGR +IYRQ+
Sbjct: 125 HRKLDDEWQRHAEQLRDDLRAQGFDLQLIGRASKMKITLDHDYIDEVLPVAGRDMIYRQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA INV MLEW L  T+  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPS
Sbjct: 185 ENSFTQPNAAINVAMLEWALDVTRHAKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA+YNIAAN V+NV+I+RM+++EFTQAM   R FNRL+ ID+ SY  +TIFVDPPRSG
Sbjct: 245 VAAAQYNIAANQVDNVQIIRMAAEEFTQAMNGVRSFNRLQGIDLSSYNCETIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD TV MVQAYP ILYISCNP++L  +L  L  TH I RLALFDQFPYT HMECGVLL 
Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLSANLDTLQATHDITRLALFDQFPYTHHMECGVLLE 364

Query: 364 RK 365
           ++
Sbjct: 365 KR 366


>gi|317494786|ref|ZP_07953198.1| tRNA (uracil-5-)-methyltransferase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917388|gb|EFV38735.1| tRNA (uracil-5-)-methyltransferase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 367

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/363 (63%), Positives = 283/363 (77%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
            TL  DQY+ QL EK+ RL  MM  F  P ++ FRS   HYRMRAEF +WHD  DLYHIM
Sbjct: 4   NTLPTDQYDAQLTEKITRLANMMTPFAAPEIEAFRSPASHYRMRAEFRVWHDESDLYHIM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FDQQTK+R+R+D F   S LIN LM  MM  +R   +LR KLFQIDYL++ +++ +V+L+
Sbjct: 64  FDQQTKQRIRVDQFPAASELINRLMTVMMDELRPNQVLRFKLFQIDYLSTMNNKVVVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W+  A  LRD L  + + IQLIGRA KTKICLD+DYVDE L VAGR ++YRQ
Sbjct: 124 YHRKLDEEWKAQAEALRDRLRTQGFDIQLIGRATKTKICLDQDYVDECLPVAGRDMVYRQ 183

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           +ENSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKP
Sbjct: 184 VENSFTQPNAAVNIKMLEWALDVTKNSKGDLLELYCGNGNFSLALARNFNRVLATEIAKP 243

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV AA++NI+ANH++NV+I+RM++++FTQAM   REF RL+ ID+ SY+ +TIFVDPPRS
Sbjct: 244 SVAAAQFNISANHIDNVQIIRMAAEDFTQAMNGVREFKRLEGIDLKSYQCETIFVDPPRS 303

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLDD T+ MVQAYP ILYISCNP++L  +L  L  TH ++RLALFDQFPYT HMECGVLL
Sbjct: 304 GLDDDTLRMVQAYPRILYISCNPETLSANLETLHETHQVKRLALFDQFPYTHHMECGVLL 363

Query: 363 VRK 365
            ++
Sbjct: 364 EKR 366


>gi|37528553|ref|NP_931898.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|50401483|sp|Q7MAX6|TRMA_PHOLL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|36787991|emb|CAE17108.1| tRNA (Uracil-5-)-methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 366

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/362 (62%), Positives = 286/362 (79%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L  + YEQQL EKV RL+ MM  FQ P  ++FRS   HYRMRAEF IWH+ DDLYH
Sbjct: 1   MQNLLPTESYEQQLTEKVSRLKNMMAPFQPPRPEVFRSPLSHYRMRAEFRIWHEQDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQTK+R+R+  F   S LIN +M+ ++ +IR E +L  KLFQIDYL++ S++ +V+
Sbjct: 61  IMFDQQTKQRIRLVQFPVASKLINKMMVVLIDSIRSEQILCHKLFQIDYLSTCSNKILVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L + W + A+RLR+AL  + + ++LIGRA KTKI LD DY+DE L VAGR +IY
Sbjct: 121 LLYHKKLGEEWTQQALRLREALRHKGFDVELIGRAAKTKITLDHDYIDEVLPVAGRKMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+HMLEW +  TK  +GDLLELYCGNGNFSL LA++F+RVLA EIA
Sbjct: 181 RQVENSFTQPNASVNIHMLEWAINITKDSKGDLLELYCGNGNFSLALAQNFERVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNI AN ++NV+I+RMS++EFTQAM  EREFNRL+ I++ SY+ +TIFVDPP
Sbjct: 241 KPSVAAAQYNITANGIDNVQIIRMSAEEFTQAMNGEREFNRLQGINLKSYQCETIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD+ T+ MV+AYP ILYISCNP++LC +L  L+ TH I  LALFDQFPYT HMECGV
Sbjct: 301 RSGLDEKTLEMVRAYPRILYISCNPETLCHNLETLTQTHKISHLALFDQFPYTHHMECGV 360

Query: 361 LL 362
           LL
Sbjct: 361 LL 362


>gi|213857560|ref|ZP_03384531.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 352

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/347 (65%), Positives = 275/347 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFP
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFP 352


>gi|322834974|ref|YP_004215001.1| tRNA (uracil-5-)-methyltransferase [Rahnella sp. Y9602]
 gi|321170175|gb|ADW75874.1| tRNA (uracil-5-)-methyltransferase [Rahnella sp. Y9602]
          Length = 366

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/359 (63%), Positives = 274/359 (76%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L I+ Y+ QLAEK  RL  MM  +  P   +FRS   HYRMRAEF +WHD  DLYHIMF
Sbjct: 5   NLPIEHYDDQLAEKTARLTAMMSPYNAPQPDVFRSPVSHYRMRAEFRVWHDEGDLYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQTK R+R+D F   S LIN LM +++A I+ +P LR K+FQIDYL+++S + I +L+Y
Sbjct: 65  DQQTKARVRVDQFPTASELINRLMPKLIAAIKQDPALRRKIFQIDYLSTRSGKIIASLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LDD W++ A  LRD L A  + IQLIGRA KTKI LD+DYVDE L VAGR +IYRQ+
Sbjct: 125 HRKLDDEWQQAATALRDQLRADGFDIQLIGRAAKTKIMLDQDYVDEVLPVAGRDMIYRQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW L AT+   GDLLELYCGNGNFSL LAR+F RVLA EIAKPS
Sbjct: 185 ENSFTQPNAEMNIQMLEWALKATENSTGDLLELYCGNGNFSLALARNFRRVLATEIAKPS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA++NIAANH++NV+I+RM++++FTQA+   REF RL+DID+  Y   TIFVDPPRSG
Sbjct: 245 VTAAQFNIAANHIDNVQIIRMAAEDFTQALNGVREFRRLQDIDLSGYECNTIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           LDD TV MV  Y  ILYISCNP++LC +L  LS TH + RLALFDQFPYT HME GVLL
Sbjct: 305 LDDETVKMVAGYDRILYISCNPETLCANLETLSKTHRVTRLALFDQFPYTHHMESGVLL 363


>gi|197287058|ref|YP_002152930.1| tRNA (uracil-5-)-methyltransferase [Proteus mirabilis HI4320]
 gi|262827918|sp|B4F1H4|TRMA_PROMH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|194684545|emb|CAR46359.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis HI4320]
          Length = 365

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 219/365 (60%), Positives = 282/365 (77%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  +L    Y+ QL EK +RL++MM  F  PN+++F S   HYRMRAEF IWH+ D LYH
Sbjct: 1   MQNSLPTQTYQSQLNEKTERLQKMMAPFNAPNVEVFSSPEQHYRMRAEFRIWHEQDALYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ+TK+R+R+D F   S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+
Sbjct: 61  IMFDQETKQRIRVDQFPVASQLINQMMVALLAEIKDKPTLRHKLFQIDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ +D+ W++ A  LR  L A+ + +QLIGRA KTKI LD D+VDE L VAG+ +IY
Sbjct: 121 LLYHKKIDETWQQEATALRQTLIAQGFDVQLIGRAYKTKIMLDNDFVDEVLPVAGQQMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW L+ T+   GDLLELYCGNGNFSL LAR+F RVLA EIA
Sbjct: 181 RQVENSFTQPNAQVNIKMLEWALSVTENSTGDLLELYCGNGNFSLALARNFKRVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNIA NH++NVKI+RMS+++FTQAM   REF RL+ I++  Y+ +TIFVDPP
Sbjct: 241 KPSVHAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGINLQDYQCETIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD+ TV +V+ Y  ILYISCNP +LC++L  L  TH I +LALFDQFPYT HMECGV
Sbjct: 301 RSGLDEKTVELVKNYSRILYISCNPQTLCQNLETLIKTHKISKLALFDQFPYTHHMECGV 360

Query: 361 LLVRK 365
           LL ++
Sbjct: 361 LLEKR 365


>gi|227354694|ref|ZP_03839113.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis ATCC 29906]
 gi|227165204|gb|EEI50029.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 393

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/365 (60%), Positives = 282/365 (77%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  +L    Y+ QL EK +RL++MM  F  PN+++F S   HYRMRAEF IWH+ D LYH
Sbjct: 29  MQNSLPTQTYQSQLNEKTERLQKMMAPFNAPNVEVFSSPEQHYRMRAEFRIWHEQDALYH 88

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ+TK+R+R+D F   S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+
Sbjct: 89  IMFDQETKQRIRVDQFPVASQLINQMMVALLAEIKDKPTLRHKLFQIDYLSTLSNKIIVS 148

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ +D+ W++ A  LR  L A+ + +QLIGRA KTKI LD D+VDE L VAG+ +IY
Sbjct: 149 LLYHKKIDETWQQEATALRQTLIAQGFDVQLIGRAYKTKIMLDNDFVDEILPVAGQQMIY 208

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW L+ T+   GDLLELYCGNGNFSL LAR+F RVLA EIA
Sbjct: 209 RQVENSFTQPNAQVNIKMLEWALSVTENSTGDLLELYCGNGNFSLALARNFKRVLATEIA 268

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNIA NH++NVKI+RMS+++FTQAM   REF RL+ I++  Y+ +TIFVDPP
Sbjct: 269 KPSVHAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGINLQDYQCETIFVDPP 328

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD+ TV +V+ Y  ILYISCNP +LC++L  L  TH I +LALFDQFPYT HMECGV
Sbjct: 329 RSGLDEKTVELVKNYSRILYISCNPQTLCQNLETLIKTHKISKLALFDQFPYTHHMECGV 388

Query: 361 LLVRK 365
           LL ++
Sbjct: 389 LLEKR 393


>gi|188025467|ref|ZP_02958774.2| hypothetical protein PROSTU_00526 [Providencia stuartii ATCC 25827]
 gi|188023296|gb|EDU61336.1| hypothetical protein PROSTU_00526 [Providencia stuartii ATCC 25827]
          Length = 367

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/358 (61%), Positives = 281/358 (78%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + YE QLAEKV+RL+ MM  +     ++F S   HYRMRAEF +WHDGDDL+HIMFD++T
Sbjct: 10  EHYELQLAEKVERLKTMMAPYTAMEPEVFTSPESHYRMRAEFRVWHDGDDLFHIMFDKET 69

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           KER+RID F   S LIN +M E++  I+   LLR KLFQIDYL++ S++ IV+L+YH+ L
Sbjct: 70  KERVRIDQFPVASQLINNIMAEILPLIKENALLRHKLFQIDYLSTLSNKLIVSLLYHKKL 129

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
            + W E A +L+  L  + + +QLIGRA+KTKI LD DYVDE L V G+ +IYRQ+ENSF
Sbjct: 130 TEEWIEAAKQLKTTLINKGFDLQLIGRASKTKIMLDNDYVDEILPVNGKNMIYRQVENSF 189

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPNA +N+ MLEW + AT+G  GDLLELYCGNGNFSL LA++F+RVLA EIAKPSV AA
Sbjct: 190 TQPNAQVNIKMLEWAIDATQGATGDLLELYCGNGNFSLALAQNFERVLATEIAKPSVAAA 249

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +YNIAAN ++NV+I+RMS+++FTQAMR  REF RL  I++  Y+  TIFVDPPRSGLDD 
Sbjct: 250 QYNIAANQIDNVQIIRMSAEDFTQAMRGVREFKRLDGINLADYQCNTIFVDPPRSGLDDK 309

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           TV +VQ Y +ILYISCNP++LC +LS+L+ TH I++LALFDQFPYT HME GVLL R+
Sbjct: 310 TVQLVQEYDNILYISCNPETLCDNLSVLNATHKIKKLALFDQFPYTHHMESGVLLTRR 367


>gi|212712482|ref|ZP_03320610.1| hypothetical protein PROVALCAL_03577 [Providencia alcalifaciens DSM
           30120]
 gi|212684698|gb|EEB44226.1| hypothetical protein PROVALCAL_03577 [Providencia alcalifaciens DSM
           30120]
          Length = 366

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 221/365 (60%), Positives = 284/365 (77%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  TL  + Y+ QLAEKVDRL+ +M  +  P  +IF S   HYRMRAEF IWH+GDDL+H
Sbjct: 2   MQNTLHTEDYQLQLAEKVDRLKSLMAPYAAPEPEIFSSPTSHYRMRAEFRIWHEGDDLFH 61

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFD++TKER+R+  F   S LIN +M E++  ++   LLR KLFQIDYL++ S++ IV+
Sbjct: 62  IMFDKETKERIRMTSFPVASQLINDMMAELLPLLKRTELLRHKLFQIDYLSTLSNKLIVS 121

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L D W E A +L++ L A+ + +Q+IGRA+KTKI LD DYVDE L V G+ ++Y
Sbjct: 122 LLYHKKLGDEWTEQAKQLKEDLVAKGFDVQIIGRASKTKIMLDHDYVDEILPVKGKDMVY 181

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW + AT+   GDLLELYCGNGNFSL LA++F++VLA EIA
Sbjct: 182 RQVENSFTQPNAQVNIKMLEWAIDATQHSTGDLLELYCGNGNFSLALAQNFNKVLATEIA 241

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNI AN +NNV+I+RMS+++FTQAM   REFNRL+ I++  Y+  TIFVDPP
Sbjct: 242 KPSVHAAQYNIEANKINNVQIIRMSAEDFTQAMNGVREFNRLEGINLADYQCNTIFVDPP 301

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLDD TV +VQ Y HILYISCNP++LC +L+ L+ TH IE+LALFDQFPYT HME GV
Sbjct: 302 RSGLDDKTVQLVQEYDHILYISCNPETLCDNLAELTKTHRIEKLALFDQFPYTHHMESGV 361

Query: 361 LLVRK 365
           LL R+
Sbjct: 362 LLTRR 366


>gi|261346835|ref|ZP_05974479.1| tRNA (uracil-5-)-methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282565014|gb|EFB70549.1| tRNA (uracil-5-)-methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 365

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/365 (59%), Positives = 284/365 (77%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  TL  + YE QLAEK++RL+ +M  +  P  ++F S   HYRMRAEF IWHDGDDL+H
Sbjct: 1   MQNTLHTEDYELQLAEKINRLKSLMAPYAAPEPEVFSSSKSHYRMRAEFRIWHDGDDLFH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFD++TKER+RI+ F   S LIN +M+E++  ++   LLR KLFQIDYL++ S++ I++
Sbjct: 61  IMFDKETKERIRIESFPVASQLINDMMVELLPLLKKSELLRHKLFQIDYLSTLSNKLIIS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L D W   A +L+  L A+ + +Q+IGRA+KTKI LD DYVDE L V G+ +IY
Sbjct: 121 LLYHKKLGDEWITEAKQLKADLIAKGFDVQVIGRASKTKIMLDHDYVDEILPVNGKEMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW + AT+   GDLLELYCGNGNFSL LA++F++VLA EIA
Sbjct: 181 RQVENSFTQPNAQVNIKMLEWAINATQNSTGDLLELYCGNGNFSLALAQNFNKVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV+AA+YNI AN ++NV+I+RMS+++FTQAM+  REF RL  I++  Y+  TIFVDPP
Sbjct: 241 KPSVQAAQYNIEANKIDNVQIIRMSAEDFTQAMKGVREFRRLDGINLADYQCNTIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLDD TV +VQ Y HILYISCNP++LC +L+ L+ TH +E+LALFDQFPYT HME GV
Sbjct: 301 RSGLDDKTVQLVQEYDHILYISCNPETLCDNLAELTKTHKVEKLALFDQFPYTHHMESGV 360

Query: 361 LLVRK 365
           LL R+
Sbjct: 361 LLTRR 365


>gi|284009190|emb|CBA76252.1| tRNA (uracil-5)-methyltransferase [Arsenophonus nasoniae]
          Length = 367

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/365 (58%), Positives = 283/365 (77%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L I QY  QL EK+  L  +ML +  P  +IFRS+  +YRMRAEF +WH+G DL+H
Sbjct: 1   MLNNLSITQYNSQLTEKIKYLNSIMLPYNAPKPEIFRSDFSYYRMRAEFRLWHEGQDLFH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ TK+R+RID       LIN +M+ ++  I+ + +LR KLFQ+DYL++ S++ IV+
Sbjct: 61  IMFDQTTKQRIRIDQLPIACKLINQMMVALIPLIKSKSVLRYKLFQVDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           LIYH+ L++ W E A +LR AL  + + IQLIGRA KTKI L++D++DE L +AG+++IY
Sbjct: 121 LIYHKKLNEEWIEQAKQLRIALINQGFDIQLIGRAAKTKIILEQDHIDEVLPIAGKSIIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQIENSFTQPNAGIN+ MLEW +  TK  +GDLLELYCGNGNFS+ LA++F+R+LA EIA
Sbjct: 181 RQIENSFTQPNAGINIKMLEWAIDCTKNAKGDLLELYCGNGNFSIALAQNFNRILATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNI AN +NNVKI+RMS+++FTQA++ ER+F RL+ +D+ SY+  TI +DPP
Sbjct: 241 KPSVAAAQYNIEANKINNVKIIRMSAEDFTQAIQGERQFRRLEGVDLMSYKCNTILIDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R GLD+ TV +VQ YP ILYISCNP++LC +L+IL+ TH I RLALFDQFPYT H+ECGV
Sbjct: 301 RCGLDEKTVALVQKYPRILYISCNPNTLCHNLNILNKTHKIHRLALFDQFPYTHHIECGV 360

Query: 361 LLVRK 365
           LL  K
Sbjct: 361 LLENK 365


>gi|291327277|ref|ZP_06127642.2| tRNA (uracil-5-)-methyltransferase [Providencia rettgeri DSM 1131]
 gi|291311120|gb|EFE51573.1| tRNA (uracil-5-)-methyltransferase [Providencia rettgeri DSM 1131]
          Length = 369

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 220/364 (60%), Positives = 277/364 (76%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  TL  + YEQQL EK DRL+ MM  F  P  +IF S   HYRMRAEF IWH+GDDL+H
Sbjct: 5   MPNTLHTEDYEQQLVEKTDRLKAMMAPFNAPEPEIFSSPTSHYRMRAEFRIWHEGDDLFH 64

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMF+++TKER+RID F   S LIN +M  ++  I+   LLR KLFQIDYL++ S++ IV+
Sbjct: 65  IMFNKETKERIRIDQFPVASQLINDMMAALLPLIKQNELLRHKLFQIDYLSTLSNKLIVS 124

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L + W   A  L+ AL  + + +QLIGRA+KTKI LD DYVDE L V G+ ++Y
Sbjct: 125 LLYHKKLGEEWMAEAKALKAALVEQGFDVQLIGRASKTKIMLDNDYVDEVLPVMGKNMVY 184

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW + +T+   GDLLELYCGNGNFSL LA++F+RVLA EIA
Sbjct: 185 RQVENSFTQPNAQVNIKMLEWAIESTQNSTGDLLELYCGNGNFSLALAQNFERVLATEIA 244

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNI AN++ NV+I+RMS+++FTQAM+  REF RL+ I +  Y+  TIFVDPP
Sbjct: 245 KPSVAAAQYNIEANNIENVQIIRMSAEDFTQAMQGAREFRRLEGISLADYQCNTIFVDPP 304

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD  TV +VQ Y HILYISCNP++LC +L+ L+ TH IE+LALFDQFPYT HME GV
Sbjct: 305 RSGLDAETVKLVQGYEHILYISCNPETLCDNLAELTKTHKIEKLALFDQFPYTHHMESGV 364

Query: 361 LLVR 364
           LL R
Sbjct: 365 LLSR 368


>gi|251793563|ref|YP_003008292.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|262827621|sp|C6AQU6|TRMA_AGGAN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|247534959|gb|ACS98205.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
          Length = 365

 Score =  451 bits (1161), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/362 (58%), Positives = 269/362 (74%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L +  Y   LAEK ++L  ++  F  PNLQ+F S   H+RMRAEF IWH+GDD YHIMF
Sbjct: 3   NLPVTHYSALLAEKQEKLTALLAPFNAPNLQVFASPTQHFRMRAEFRIWHEGDDFYHIMF 62

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQ+K+R R+D F   S LIN +M  ++  ++ + +L  +LFQIDYL++QS   IV+L+Y
Sbjct: 63  DQQSKQRYRVDNFPIASELINRMMTALLPLLKQQTVLHHRLFQIDYLSTQSQHIIVSLLY 122

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LD+ W+  A  LR  L  + + +Q++GRA+K KICL++DYVDE L V G+  IYRQ+
Sbjct: 123 HKALDEDWQAAAQTLRSQLQQQGFNVQIVGRASKQKICLEQDYVDEILRVHGKDYIYRQV 182

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N  MLEW +  T+   GDLLELYCGNGNFS+ LA++F +VLA EIAKPS
Sbjct: 183 ENSFTQPNATVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRKVLATEIAKPS 242

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA++NIAAN +NN++I+RMS++EFTQAM+  REFNRLK ID+ +Y   TIFVDPPR+G
Sbjct: 243 VAAAQFNIAANQINNLQIIRMSAEEFTQAMQGVREFNRLKGIDLKAYECNTIFVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV LV
Sbjct: 303 LDADTVKLVQQYERILYISCNPHTLCDNLQTLSQTHRIEKAALFDQFPYTEHMEAGVWLV 362

Query: 364 RK 365
           RK
Sbjct: 363 RK 364


>gi|315635167|ref|ZP_07890445.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC
           33393]
 gi|315476129|gb|EFU66883.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC
           33393]
          Length = 368

 Score =  451 bits (1160), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/362 (58%), Positives = 270/362 (74%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L +D+Y + L EK  +L  ++  F  P+LQ+F S   H+RMRAEF IWH+GDD YHIMF
Sbjct: 6   NLPVDRYAKLLEEKQQKLTALLSPFDAPDLQVFASPTQHFRMRAEFRIWHEGDDFYHIMF 65

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQ+K+R R+D F   S LIN +M  ++  ++ + +L  +LFQIDYL++QS Q IV+L+Y
Sbjct: 66  DQQSKQRYRVDNFPITSELINRMMTALLPLLKQQMVLHHRLFQIDYLSTQSQQIIVSLLY 125

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LD+ W+  A  LR  L  + + +Q++GRA+K KICL++DYVDE L V G+  IYRQ+
Sbjct: 126 HKALDENWQTAAQTLRSQLQQQGFNVQIVGRASKQKICLEQDYVDEILQVQGKDYIYRQV 185

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N  MLEW +  T+   GDLLELYCGNGNFS+ LA++F +VLA EIAKPS
Sbjct: 186 ENSFTQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRKVLATEIAKPS 245

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA++NIAAN V N++I+RMS++EFTQAM+  REFNRLK ID+ +Y   TIFVDPPR+G
Sbjct: 246 VAAAQFNIAANEVENLQIIRMSAEEFTQAMQGVREFNRLKGIDLKAYECNTIFVDPPRAG 305

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV LV
Sbjct: 306 LDAETVKLVQQYERILYISCNPHTLCDNLKTLSQTHRIEKAALFDQFPYTEHMEAGVWLV 365

Query: 364 RK 365
           RK
Sbjct: 366 RK 367


>gi|261866761|ref|YP_003254683.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412093|gb|ACX81464.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 365

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/362 (57%), Positives = 270/362 (74%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L +++Y   LAEK  +L  +   F  P LQ+F S   H+RMRAEF IWH+ DD YHIMF
Sbjct: 3   NLPVERYSALLAEKQKKLTALFAPFNAPELQVFASPTQHFRMRAEFRIWHEQDDFYHIMF 62

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQ+K+R R+D F   + L+N +M  ++  ++ + +L  KLFQIDYL++QS Q IV+L+Y
Sbjct: 63  DQQSKQRYRVDCFPIANELVNRMMTALLPLLKQQIVLHHKLFQIDYLSTQSQQIIVSLLY 122

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LDDAW+  A  LR  LH + + +QLIGRA+K KICL++DYVDE L+V G+  IYRQ+
Sbjct: 123 HKTLDDAWQTAARTLRSQLHQQGFNVQLIGRASKQKICLEQDYVDEILSVHGKQYIYRQV 182

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSF QPNA +N  MLEW +  T+   GDLLELYCGNGNFS+ LA++F +VLA EIAKPS
Sbjct: 183 ENSFIQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSITLAQNFRQVLATEIAKPS 242

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA++NIAAN V N++I+RMS++EFTQAM+  R FNRLK ID+ +Y+  TIFVDPPR+G
Sbjct: 243 VAAAQFNIAANKVENLQIIRMSAEEFTQAMQGVRAFNRLKGIDLTAYQCNTIFVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD+ T+ +VQ Y  +LYISCNP +LC +L IL  TH IE+ ALFDQFPYT HME GV LV
Sbjct: 303 LDNETLKLVQQYERVLYISCNPHTLCDNLQILCQTHRIEKAALFDQFPYTEHMEAGVWLV 362

Query: 364 RK 365
           RK
Sbjct: 363 RK 364


>gi|332289572|ref|YP_004420424.1| hypothetical protein UMN179_01510 [Gallibacterium anatis UMN179]
 gi|330432468|gb|AEC17527.1| hypothetical protein UMN179_01510 [Gallibacterium anatis UMN179]
          Length = 365

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/356 (58%), Positives = 276/356 (77%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y QQL +KV  L Q++  F    +++ RS   HYRMRAEF +WHDGDDLYHIMFD ++K 
Sbjct: 10  YNQQLEDKVYYLTQLLKPFFQGEIKVHRSALKHYRMRAEFRVWHDGDDLYHIMFDPKSKR 69

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           R RID F   S LINA+M  ++  ++ +P+LR +LFQIDYL++ S++ IV+L+YH+ LD+
Sbjct: 70  RYRIDQFPIASTLINAIMSALVPLLKQQPILRNQLFQIDYLSTVSNKIIVSLLYHKKLDE 129

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A +L+  L  +++ +Q+IGRANK KICLD+D++DE L + G+  IYRQ+ENSFTQ
Sbjct: 130 TWIAAAKQLKQQLEQQQFDVQIIGRANKQKICLDQDFIDEVLPINGKNYIYRQVENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNAGIN  M+EW L+ T+  +GDLLELYCGNGNFS+ LA+HF +VLA EIAKPSV+AA++
Sbjct: 190 PNAGINCQMIEWALSCTENAEGDLLELYCGNGNFSVALAQHFRKVLATEIAKPSVQAAQF 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI ANH++N++I+RMS++EFTQA++  REF RLK ID+  Y+  TIFVDPPR+GLD  T+
Sbjct: 250 NITANHIDNLQIIRMSAEEFTQALQGVREFYRLKGIDLKQYQCNTIFVDPPRAGLDAETL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            MVQ Y HILYISCNP +L  +L++LS TH IE+ ALFDQFPYTRH+E GV LVRK
Sbjct: 310 KMVQQYDHILYISCNPQTLAENLTVLSQTHHIEKAALFDQFPYTRHIESGVYLVRK 365


>gi|304415290|ref|ZP_07395981.1| tRNA (uracil-5-)-methyltransferase [Candidatus Regiella insecticola
           LSR1]
 gi|304282856|gb|EFL91328.1| tRNA (uracil-5-)-methyltransferase [Candidatus Regiella insecticola
           LSR1]
          Length = 357

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/357 (58%), Positives = 274/357 (76%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           +A+KVD L+ ++  F+VP +++F S   HYRMRAEF +WHDGDDLYHIMF  +TK+R+R+
Sbjct: 1   MAKKVDCLKDILSQFEVPEVEVFSSPIEHYRMRAEFRVWHDGDDLYHIMFAPKTKQRIRV 60

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           ++F   S LIN LM  +++ ++ +P+LR KLFQIDYL++ S++ I +L+YHR LD+ W++
Sbjct: 61  EHFPIASQLINRLMKILISIVKNQPILRHKLFQIDYLSTYSNKIIASLLYHRKLDEEWQQ 120

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
            AIRLRD L  + + +QLIGRA KTKI LD+D+VDE L++AGR +IYRQIENSFTQPNA 
Sbjct: 121 QAIRLRDQLRLQGFDLQLIGRAAKTKIVLDQDHVDEVLSIAGRDIIYRQIENSFTQPNAA 180

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +N+HMLEW +  +K  QGDLLE YCGNGNFSL LAR+F RVLA EIAKPSV AA++NIA 
Sbjct: 181 VNIHMLEWAIDVSKNFQGDLLEPYCGNGNFSLALARNFRRVLATEIAKPSVAAAQFNIAV 240

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++NV I+RMS++E  QA+  +R+FNRL+ I++ SY  +TI VDPPR GLDD TV M  
Sbjct: 241 NGIDNVTIIRMSAQELVQALAGQRQFNRLRGIELKSYHCETILVDPPRCGLDDTTVKMAS 300

Query: 314 AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
            Y  I+YISCNP SL  +L  L  T+ I RLALFDQFPYT H+ECGVLL ++    H
Sbjct: 301 TYSRIIYISCNPISLRSNLEQLQHTYKISRLALFDQFPYTEHIECGVLLEKREPVNH 357


>gi|260914579|ref|ZP_05921047.1| tRNA (uracil-5-)-methyltransferase [Pasteurella dagmatis ATCC
           43325]
 gi|260631370|gb|EEX49553.1| tRNA (uracil-5-)-methyltransferase [Pasteurella dagmatis ATCC
           43325]
          Length = 365

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/365 (57%), Positives = 272/365 (74%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L I+QY+  LAEK  +L  ++  F  P++++F S   +YRMRAEF IWH+  D YH
Sbjct: 1   MQSKLPIEQYDSLLAEKQQKLTALLAPFNPPSIEVFSSPVQNYRMRAEFRIWHNQGDFYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQT++R R+D F   S LIN +M  ++  ++ E  L  KLFQIDYL++ S++ IV+
Sbjct: 61  IMFDQQTRQRYRVDTFPIASELINQMMTALLPLLKTERALHHKLFQIDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ LD+ W E A +L+ AL  + + +Q+IGRA+K KICLD ++VDE LTV  +  +Y
Sbjct: 121 LLYHKTLDEQWEEAAKQLKLALEQQGFDVQIIGRASKQKICLDNEFVDEVLTVHSKPYVY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N  MLEW +  TKG QGDLLELYCGNGNFS+ LA++F +VLA EIA
Sbjct: 181 RQVENSFTQPNAMVNQKMLEWAIDCTKGSQGDLLELYCGNGNFSIALAQNFRKVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA++NIA N V+N++I+RMS++EFTQA+   REFNRLK ID+ +Y   TIFVDPP
Sbjct: 241 KPSVAAAQFNIAENGVDNLQIIRMSAEEFTQAINGVREFNRLKGIDLKAYECNTIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD+ TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV
Sbjct: 301 RAGLDEETVKLVQGYDRILYISCNPHTLCDNLQTLSQTHYIEKAALFDQFPYTDHMETGV 360

Query: 361 LLVRK 365
            L+RK
Sbjct: 361 WLIRK 365


>gi|145297241|ref|YP_001140082.1| tRNA (uracil-5-)-methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166988115|sp|A4SHG2|TRMA_AERS4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|142850013|gb|ABO88334.1| tRNA (uracil-5)-methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 377

 Score =  444 bits (1143), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/356 (59%), Positives = 272/356 (76%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL EK +RL Q+   F  P L++  S   HYRMRAEF IWH+GDDL+H M+ Q TKE
Sbjct: 20  YQAQLDEKRERLTQLFAGFNPPALEVHASPAEHYRMRAEFRIWHEGDDLFHCMYAQATKE 79

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            +R+D+F   SLLIN LM  ++A +R   +LR KLFQIDYL++QS Q IV+L+YHR L+ 
Sbjct: 80  IIRVDHFPTASLLINQLMPVLLAGLRPHFVLRRKLFQIDYLSTQSGQIIVSLLYHRKLEA 139

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W++ A  L+  L A+ + ++LIGRA+K KICL  D+V E+L VAGR L Y+Q+ENSFTQ
Sbjct: 140 EWQQAAETLQADLQAQGFDLRLIGRAHKQKICLGDDFVIEQLNVAGRQLTYKQVENSFTQ 199

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA IN  ML W L  T+G +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A++
Sbjct: 200 PNAAINEQMLGWALDVTRGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQF 259

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ SY+  TIFVDPPR+GLDDATV
Sbjct: 260 NIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLKSYQCNTIFVDPPRAGLDDATV 319

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y +ILYISCNP++L  ++++L  TH + R ALFDQFP+T HME GV L RK
Sbjct: 320 KLVQEYDNILYISCNPETLQANMAVLGETHEVARFALFDQFPWTHHMEAGVYLKRK 375


>gi|330827816|ref|YP_004390768.1| tRNA (uracil-5-)-methyltransferase [Aeromonas veronii B565]
 gi|328802952|gb|AEB48151.1| tRNA (uracil-5-)-methyltransferase [Aeromonas veronii B565]
          Length = 377

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/356 (59%), Positives = 272/356 (76%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL EK  RL ++   F +P L++  S   +YRMRAEF IWH+GDDL+H M+   TKE
Sbjct: 20  YQAQLDEKRARLTELFAGFTLPALEVHSSPAEYYRMRAEFRIWHEGDDLFHCMYAPATKE 79

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            ++ID+F   S LIN LM  ++  +R  P+LR KLFQIDYL++QS Q IV+L+YHR L+ 
Sbjct: 80  IIKIDHFPTASRLINQLMPLLLEGLRPHPVLRRKLFQIDYLSTQSGQIIVSLLYHRKLEA 139

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W++ A  L+  L A+ +++QLIGRA+K KICL  D+V E+L VAGR LIY+Q+ENSFTQ
Sbjct: 140 EWQQAAEALQADLRAKGFELQLIGRAHKQKICLGDDFVIEQLNVAGRQLIYKQVENSFTQ 199

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA IN  ML W L  TKG +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A++
Sbjct: 200 PNATINEQMLAWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQF 259

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ SY+  TIFVDPPR+GLDDATV
Sbjct: 260 NIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLKSYQCNTIFVDPPRAGLDDATV 319

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y +ILYISCNP++L  ++++L  TH I R ALFDQFP+T HME GV L RK
Sbjct: 320 KLVQEYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLRRK 375


>gi|117621352|ref|YP_858614.1| tRNA (uracil-5-)-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|134035054|sp|A0KQR3|TRMA_AERHH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|117562759|gb|ABK39707.1| tRNA (uracil-5-)-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 377

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/356 (59%), Positives = 270/356 (75%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL EK +RL  +   F +P L++  S   HYRMRAEF IWHDGDDLYH M+   TKE
Sbjct: 20  YQAQLDEKRERLCGLFADFTLPALEVHASPAEHYRMRAEFRIWHDGDDLYHCMYAPATKE 79

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            +R+D F   S LIN LM  ++  +R  P+LR KLFQIDYL++QS Q  V+L+YHR L+ 
Sbjct: 80  IIRVDQFPTASRLINQLMPVLLEGLRPHPVLRRKLFQIDYLSTQSGQICVSLLYHRKLES 139

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W++ A  L+  L A+ +++QLIGRA+K KICL  ++V ERLTV GR L+Y+Q+ENSFTQ
Sbjct: 140 EWQQAAEALQADLRAKGFELQLIGRAHKQKICLGEEFVIERLTVQGRQLVYKQVENSFTQ 199

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA IN  ML W L  TKG +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A++
Sbjct: 200 PNAAINEQMLGWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQF 259

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ +Y+  TIFVDPPR+GLDDATV
Sbjct: 260 NIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLGAYQCNTIFVDPPRAGLDDATV 319

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y +ILYISCNP++L  ++++L  TH I R ALFDQFP+T HME GV L RK
Sbjct: 320 KLVQDYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLKRK 375


>gi|237807152|ref|YP_002891592.1| tRNA (uracil-5-)-methyltransferase [Tolumonas auensis DSM 9187]
 gi|259547838|sp|C4L9A7|TRMA_TOLAT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|237499413|gb|ACQ92006.1| tRNA (uracil-5-)-methyltransferase [Tolumonas auensis DSM 9187]
          Length = 367

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/357 (59%), Positives = 267/357 (74%), Gaps = 1/357 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQTK 68
           Y+QQL EK  RL Q++  FQ P  ++F S P HYRMRAEF IWH+G D+LY++MF+ +TK
Sbjct: 11  YQQQLHEKQQRLTQLLAPFQAPEPEVFASAPSHYRMRAEFRIWHEGVDELYYVMFNSETK 70

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           +R  +  F  GS LIN LM  ++  IR    L+ KLFQID+LT+ S +A+++L+YH+ L+
Sbjct: 71  QRYYVHEFPTGSQLINRLMPRLLELIRGNHTLKYKLFQIDFLTTLSGEALISLLYHKTLN 130

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +AW+  A  LR AL A   ++ ++GRA+K KI L+R+YV E+L V  RTL Y Q+ENSFT
Sbjct: 131 EAWQPAATELRQALRAEFGEVDVVGRAHKQKIVLEREYVLEQLQVGDRTLEYMQVENSFT 190

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNAG+N  ML W    T   QGDLLELYCGNGNFSL LA++F+RVLA EIAKPSV AA+
Sbjct: 191 QPNAGMNQQMLGWATDVTADCQGDLLELYCGNGNFSLALAKNFNRVLATEIAKPSVHAAQ 250

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NIA N ++NV+I+RMS++EFTQAM  EREFNRLK ID+ SY+  TI VDPPR+GLD AT
Sbjct: 251 HNIAVNKIDNVQILRMSAEEFTQAMNGEREFNRLKGIDLQSYQCNTILVDPPRAGLDPAT 310

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           V M+QAY  ILYISCNP++LC +L  L  TH I R ALFDQFP+T HME GV LVRK
Sbjct: 311 VAMIQAYEQILYISCNPETLCDNLKTLCQTHNIARCALFDQFPFTHHMESGVWLVRK 367


>gi|293391475|ref|ZP_06635809.1| hypothetical protein D7S_1630 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952009|gb|EFE02128.1| hypothetical protein D7S_1630 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 365

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/362 (57%), Positives = 265/362 (73%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L +++Y   LAEK  +L  +   F  P LQ+F S   H+RMRAEF IWH+ DD YHIMF
Sbjct: 3   NLPVERYAALLAEKQKKLTALFAPFDAPELQVFASPTQHFRMRAEFRIWHEQDDFYHIMF 62

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQ+K+R R+D F   S LIN +M  ++  ++ + +L  +LFQIDYL++QS Q IV+L+Y
Sbjct: 63  DQQSKQRYRVDRFPVASELINRMMTALLPLLKQQTVLHHRLFQIDYLSTQSQQIIVSLLY 122

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LDDAW+     LR  L  + + +QLIGRA+K KICL++DYVDE L V  +  +YRQ+
Sbjct: 123 HKTLDDAWQTATRTLRSQLQQQGFNVQLIGRASKQKICLEQDYVDEILNVHDKQYVYRQV 182

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N  MLEW +  T+   GDLLELYCGNGNFS+ LA++F  VLA EIAKPS
Sbjct: 183 ENSFTQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRNVLATEIAKPS 242

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA++NIAAN V N++I+RMS++EFTQAM+  R FNRLK ID+ +Y+  TIFVDPPR+G
Sbjct: 243 VAAAQFNIAANKVENLQIIRMSAEEFTQAMQGVRAFNRLKGIDLSAYQCNTIFVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD+ T+ +VQ Y  ILYISCNP +LC +L  L  TH IE+ ALFDQFPYT HME GV LV
Sbjct: 303 LDEETLKLVQQYERILYISCNPHTLCDNLQTLCQTHRIEKAALFDQFPYTEHMEAGVWLV 362

Query: 364 RK 365
           RK
Sbjct: 363 RK 364


>gi|209696286|ref|YP_002264217.1| tRNA (uracil-5-)-methyltransferase [Aliivibrio salmonicida LFI1238]
 gi|226706003|sp|B6ENT4|TRMA_ALISL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|208010240|emb|CAQ80571.1| tRNA (uracil-5)-methyltransferase [Aliivibrio salmonicida LFI1238]
          Length = 368

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/360 (56%), Positives = 268/360 (74%), Gaps = 2/360 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + Y+ QL EK + L  M   F VP L++F S   +YRMRAEF IWH+GDD+Y++MFDQ+T
Sbjct: 9   ENYQVQLDEKTEALSAMFSEFDVPELEVFSSPAENYRMRAEFRIWHEGDDMYYVMFDQKT 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           KE+ R+DYF+P + LIN LM  +   I+    LR K+FQ+D+L++ S + +V+++YHR L
Sbjct: 69  KEKYRVDYFLPATRLINDLMPLLAEAIKGSKTLRYKMFQVDFLSTLSGEILVSMLYHRQL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           DDAW+E A  L+  L+ + + + LIGRA K KI LD+++V E+L V    L Y+Q+ENSF
Sbjct: 129 DDAWKEEAAVLKQQLNEKGFNLNLIGRARKMKIVLDQEFVIEKLKVNDDILTYKQVENSF 188

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A
Sbjct: 189 TQPNGVVAQKMLEWAVDCTQDSQGDLLELYCGNGNFSLALAKNFDRVLATELAKPSVESA 248

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLD 305
           +YNIAAN+++NV+IVRMS+++FT AM  +REF RLKD  +D+ SY   TIFVDPPRSG+D
Sbjct: 249 QYNIAANNIDNVQIVRMSAEDFTDAMEGKREFRRLKDQNVDLKSYNCNTIFVDPPRSGMD 308

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + T  MVQ Y  I+YISCNPD+L  +L+ILS TH I R ALFDQFPYT HME G+ L RK
Sbjct: 309 EGTCKMVQGYERIMYISCNPDTLKENLAILSKTHNITRFALFDQFPYTHHMEAGIFLERK 368


>gi|325576854|ref|ZP_08147469.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC
           33392]
 gi|325161060|gb|EGC73178.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC
           33392]
          Length = 363

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/361 (57%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K ++L  ++  F  P + +F S   HYRMRAEF IWHD  D YHIMFD
Sbjct: 3   LPISQYTELLQKKTEKLTALLQPFNAPEIAVFDSPTSHYRMRAEFRIWHDKGDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QSTLQRYRVDEFPIASKLINRMMKTLLPLLKTQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W+  A  L+D L    + +QLIGRA+K KICL++D+VDE L V GR  +YRQ+E
Sbjct: 123 KQLTEEWQNAAENLKDELQQLDFDVQLIGRASKQKICLEQDFVDEVLPVKGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+G QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNAAVNCKMLEWAIDCTQGSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y+  TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYQCNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV LVR
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCENLQTLSQTHRIEKAALFDQFPYTDHMESGVWLVR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|309973661|gb|ADO96862.1| tRNA m(5)U54 methyltransferase [Haemophilus influenzae R2846]
          Length = 377

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/365 (56%), Positives = 268/365 (73%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           +S  L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YH
Sbjct: 13  ISMQLPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYH 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+
Sbjct: 73  IMFDQATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVS 132

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +Y
Sbjct: 133 LLYHKTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVY 192

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIA
Sbjct: 193 RQVENSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIA 252

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPP
Sbjct: 253 KPSVAAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPP 312

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV
Sbjct: 313 RAGLDPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGV 372

Query: 361 LLVRK 365
            L+RK
Sbjct: 373 WLIRK 377


>gi|170718062|ref|YP_001783531.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 2336]
 gi|189036040|sp|B0UVN9|TRMA_HAES2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|168826191|gb|ACA31562.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 2336]
          Length = 366

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/363 (56%), Positives = 268/363 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY   LAEK  +L  ++  F  P L +F SE  H+RMRAEF IWH+ DD YHIMFD
Sbjct: 4   LPIEQYSALLAEKQQKLTALLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 63

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+TK+R RID F   S LIN +M+ ++  ++   +L  +LFQIDYL++ S++ IV+L+YH
Sbjct: 64  QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 123

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L++ W + A +L+  L  + + +Q+IGRANK KICL +D+VDE L V  +  IYRQ+E
Sbjct: 124 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 183

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  TK  QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 184 NSFTQPNATVNCKMLEWAINCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIAAN ++N+ I+RMS+++FTQAM   R FNRLK I++  Y+  TIFVDPPRSGL
Sbjct: 244 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRSGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D ATV +VQ Y  ILYISCNP +LC +L  L+ TH IE+ ALFDQFPYT HME GV L++
Sbjct: 304 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 363

Query: 365 KPS 367
           K +
Sbjct: 364 KSN 366


>gi|301155200|emb|CBW14665.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae
           T3T1]
          Length = 363

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/361 (56%), Positives = 264/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K ++L  ++  F  P + +F S   HYRMRAEF IWHD  D YHIMFD
Sbjct: 3   LPISQYTELLQKKTEKLTALLQPFNAPEIAVFDSPTSHYRMRAEFRIWHDKGDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QTTLQRYRVDEFPIASELINRMMKALLPLLKTQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W+  A  L+  L    + +QLIGRA+K KICL++D+VDE L V GR  +YRQ+E
Sbjct: 123 KQLTEEWQSAAANLKGELQQLGFDVQLIGRASKQKICLEQDFVDEVLPVKGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+G QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNAAVNCKMLEWAIDCTQGSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y+  TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKTYQCNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV LVR
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCENLQTLSQTHRIEKAALFDQFPYTDHMESGVWLVR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|113460452|ref|YP_718514.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 129PT]
 gi|112822495|gb|ABI24584.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 129PT]
          Length = 399

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 204/363 (56%), Positives = 269/363 (74%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY   LAEK  +L +++  F  P L +F SE  H+RMRAEF IWH+ DD YHIMFD
Sbjct: 37  LPIEQYSALLAEKQQKLTELLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 96

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+TK+R RID F   S LIN +M+ ++  ++   +L  +LFQIDYL++ S++ IV+L+YH
Sbjct: 97  QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 156

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L++ W + A +L+  L  + + +Q+IGRANK KICL +D+VDE L V  +  IYRQ+E
Sbjct: 157 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 216

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  TK  QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 217 NSFTQPNATVNCKMLEWAIDCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 276

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIAAN ++N+ I+RMS+++FTQAM   R FNRLK I++  Y+  TIFVDPPR+GL
Sbjct: 277 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRAGL 336

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D ATV +VQ Y  ILYISCNP +LC +L  L+ TH IE+ ALFDQFPYT HME GV L++
Sbjct: 337 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 396

Query: 365 KPS 367
           K +
Sbjct: 397 KSN 399


>gi|229525047|ref|ZP_04414452.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae bv. albensis
           VL426]
 gi|229338628|gb|EEO03645.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae bv. albensis
           VL426]
          Length = 369

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/358 (56%), Positives = 269/358 (75%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNAG+   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAGVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|134035059|sp|Q0I1I7|TRMA_HAES1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 366

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/363 (56%), Positives = 269/363 (74%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY   LAEK  +L +++  F  P L +F SE  H+RMRAEF IWH+ DD YHIMFD
Sbjct: 4   LPIEQYSALLAEKQQKLTELLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 63

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+TK+R RID F   S LIN +M+ ++  ++   +L  +LFQIDYL++ S++ IV+L+YH
Sbjct: 64  QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 123

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L++ W + A +L+  L  + + +Q+IGRANK KICL +D+VDE L V  +  IYRQ+E
Sbjct: 124 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 183

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  TK  QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 184 NSFTQPNATVNCKMLEWAIDCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIAAN ++N+ I+RMS+++FTQAM   R FNRLK I++  Y+  TIFVDPPR+GL
Sbjct: 244 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D ATV +VQ Y  ILYISCNP +LC +L  L+ TH IE+ ALFDQFPYT HME GV L++
Sbjct: 304 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 363

Query: 365 KPS 367
           K +
Sbjct: 364 KSN 366


>gi|260581665|ref|ZP_05849462.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae NT127]
 gi|260095258|gb|EEW79149.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae NT127]
          Length = 363

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/361 (56%), Positives = 266/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWTIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGARAFNRLKGIDLESYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDCILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|52426422|ref|YP_089559.1| tRNA (uracil-5-)-methyltransferase [Mannheimia succiniciproducens
           MBEL55E]
 gi|115305869|sp|Q65PY6|TRMA_MANSM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|52308474|gb|AAU38974.1| TrmA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 364

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/361 (56%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I++Y + L +K  +L  ++  F  P L +F S   +YRMRAEF +WHD  DLYHIMF+
Sbjct: 4   LPIEKYSELLTKKQQKLTALLAPFNAPELSVFVSPVQNYRMRAEFRVWHDKGDLYHIMFN 63

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R R+D F   SLLIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 64  QQTKQRYRVDCFPIASLLINRMMENLIPLLKEQEILTKKLFQIDYLSTLSNKIIVSLLYH 123

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W+  A  L+  L    + +Q++GRA K KICL+RDY DE L V GR  +YRQIE
Sbjct: 124 KTLTEEWQAAAQALKVRLEKLDFDVQIVGRATKQKICLERDYADEVLPVNGRNYVYRQIE 183

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  TK   GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 184 NSFTQPNAAVNCKMLEWAIGCTKNSSGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N ++N++I+RMS++EFTQAM   REFNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 244 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYECNTIFVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP++LC +L+ L+ TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 304 DPDTVKLVQNYDRILYISCNPNTLCNNLTELTKTHRIEKAALFDQFPYTDHMESGVWLIR 363

Query: 365 K 365
           K
Sbjct: 364 K 364


>gi|315178788|gb|ADT85702.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii NCTC 11218]
          Length = 376

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/360 (57%), Positives = 268/360 (74%), Gaps = 2/360 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + Y+ QL +KV RL  M  A+QVP L++F S   HYRMRAEF +WHDGDD+Y+IMF+ +T
Sbjct: 16  NHYQAQLDDKVTRLTDMFQAYQVPELEVFESPQQHYRMRAEFRVWHDGDDMYYIMFNPET 75

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +E+ R+D F   S LIN LM  +M  ++ +  LR KLFQ+D+L++ S + +V+L+YHR L
Sbjct: 76  REKYRVDQFPAASRLINDLMPLLMDAMKGDDTLRRKLFQVDFLSTLSGEVLVSLLYHRQL 135

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D+AW   A +L+  L+   + + LIGRA K KI LDRD+V E+L V G+  IY+Q+ENSF
Sbjct: 136 DNAWTAAAKKLKQRLNDEGFNLNLIGRARKMKIVLDRDFVVEKLHVNGQPYIYQQVENSF 195

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A
Sbjct: 196 TQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESA 255

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLD 305
           +YNIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SY   TIFVDPPR+G+D
Sbjct: 256 QYNIAANAIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLKSYNCNTIFVDPPRAGMD 315

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 316 IDTCKMVQGYERILYISCNPETLKDNLDVLCETHRVTRFALFDQFPYTHHMEAGVLLERK 375


>gi|320154991|ref|YP_004187370.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|319930303|gb|ADV85167.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 369

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 267/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y+QQLAEKV RL  M   +Q P L++F S   HYRMRAEF +WH+G+++Y+IMF+Q+T+
Sbjct: 10  RYQQQLAEKVQRLTDMFAPYQAPELEVFESPEQHYRMRAEFRVWHEGEEMYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           DAW E A  L+  L+   + + LIGRA K KI LDRDYV E+L V G+  +Y+Q+ENSFT
Sbjct: 130 DAWIENAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVVEKLDVNGKPYVYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN + NV+I+RMS++EFT+AM  +REF RLKD  ID+ SY   TIFVDPPRSG+D 
Sbjct: 250 YNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  ILYISCNP++L  +L ILS TH I R ALFDQFPYT HME GV+L RK
Sbjct: 310 DTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLERK 368


>gi|37678313|ref|NP_932922.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus YJ016]
 gi|50401488|sp|Q7MQ79|TRMA_VIBVY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|37197052|dbj|BAC92893.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016]
          Length = 369

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 267/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y+QQLAEKV RL  M   +Q P L++F S   HYRMRAEF +WH+G+++Y+IMF+Q+T+
Sbjct: 10  RYQQQLAEKVQRLTDMFAPYQAPELEVFESPEQHYRMRAEFRVWHEGEEMYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           DAW E A  L+  L+   + + LIGRA K KI LDRDYV E+L V G+  +Y+Q+ENSFT
Sbjct: 130 DAWIENAKALKQRLNDEGFDLNLIGRARKMKIVLDRDYVVEKLDVNGKPYVYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN + NV+I+RMS++EFT+AM  +REF RLKD  ID+ SY   TIFVDPPRSG+D 
Sbjct: 250 YNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  ILYISCNP++L  +L ILS TH I R ALFDQFPYT HME GV+L RK
Sbjct: 310 DTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLERK 368


>gi|329122854|ref|ZP_08251426.1| tRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC
           11116]
 gi|327472118|gb|EGF17556.1| tRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC
           11116]
          Length = 363

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/361 (56%), Positives = 266/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQVIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|229845900|ref|ZP_04466012.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 7P49H1]
 gi|229810904|gb|EEP46621.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 7P49H1]
          Length = 363

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/361 (56%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S  IN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASTQINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC D+DYVDE L+V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFDVQIIGRASKQKICFDQDYVDEILSVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|260767615|ref|ZP_05876551.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii CIP 102972]
 gi|260617515|gb|EEX42698.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii CIP 102972]
          Length = 376

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/359 (57%), Positives = 267/359 (74%), Gaps = 2/359 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + Y+ QL +KV RL  M  A+QVP L++F S   HYRMRAEF +WHDGDD+Y+IMF+ +T
Sbjct: 16  NHYQAQLDDKVTRLTDMFQAYQVPELEVFESPQQHYRMRAEFRVWHDGDDMYYIMFNPET 75

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +E+ R+D F   S LIN LM  +M  ++ +  LR KLFQ+D+L++ S + +V+L+YHR L
Sbjct: 76  REKYRVDQFPAASRLINDLMPLLMDAMKGDDTLRRKLFQVDFLSTLSGEVLVSLLYHRQL 135

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           DDAW   A +L+  L+   + + LIGRA K KI LDRD+V E+L V G+  IY+Q+ENSF
Sbjct: 136 DDAWTAAAKKLKQRLNDEGFNLNLIGRARKMKIVLDRDFVVEKLHVNGQPYIYQQVENSF 195

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A
Sbjct: 196 TQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESA 255

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLD 305
           +YNIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SY   TIFVDPPR+G+D
Sbjct: 256 QYNIAANAIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLKSYNCNTIFVDPPRAGMD 315

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 316 IDTCKMVQGYERILYISCNPETLKENLDVLCETHRVTRFALFDQFPYTHHMEAGVMLER 374


>gi|152978112|ref|YP_001343741.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus succinogenes
           130Z]
 gi|171472956|sp|A6VLF9|TRMA_ACTSZ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|150839835|gb|ABR73806.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus succinogenes
           130Z]
          Length = 369

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/366 (56%), Positives = 268/366 (73%), Gaps = 5/366 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDLY 59
           L I++Y++ LAEK  +L  ++  F  P L +F S   H+RMRAEF +WHD     G +LY
Sbjct: 4   LPIEKYDELLAEKCRKLTALLAPFDAPALTVFPSPTQHFRMRAEFRLWHDYSENRGGNLY 63

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           HIMFD+ TK+R R+D F   S LIN +M  ++  ++ + +L  KLFQIDYL++ S+Q IV
Sbjct: 64  HIMFDKTTKQRYRVDQFPVASQLINRMMATILPLLKEQDVLSRKLFQIDYLSTLSEQIIV 123

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +L+YH+ L D W+E A  L+  L    + +Q+IGRA K KICLD+D+VDE L+V  +  +
Sbjct: 124 SLLYHKTLTDEWQEAAQALKVRLRNLGFSVQIIGRATKQKICLDQDFVDEELSVGDKKYV 183

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ+ENSFTQPNA +N  MLEW +  T+  QGDLLELYCGNGNFS+ LA++F +VLA EI
Sbjct: 184 YRQVENSFTQPNAALNCKMLEWAIDCTRDSQGDLLELYCGNGNFSIALAQNFRKVLATEI 243

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           AKPSV AA++NIAAN V+N++I+RMS++EFTQA+   R FNRLK ID+ +Y   TIFVDP
Sbjct: 244 AKPSVAAAQFNIAANQVDNLQIIRMSAEEFTQAVNGVRAFNRLKGIDLQAYECHTIFVDP 303

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD  TV +VQ Y  ILYISCNP +LC +L ILS TH IER ALFDQFPYT HME G
Sbjct: 304 PRAGLDSDTVKLVQKYDRILYISCNPQTLCENLQILSQTHRIERAALFDQFPYTEHMEAG 363

Query: 360 VLLVRK 365
           V L+RK
Sbjct: 364 VWLMRK 369


>gi|16272789|ref|NP_439008.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae Rd KW20]
 gi|68249442|ref|YP_248554.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|260579939|ref|ZP_05847769.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae RdAW]
 gi|1174775|sp|P31812|TRMA_HAEIN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|81336130|sp|Q4QM53|TRMA_HAEI8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|1573862|gb|AAC22505.1| tRNA (uracil-5-)-methyltransferase (trmA) [Haemophilus influenzae
           Rd KW20]
 gi|68057641|gb|AAX87894.1| tRNA (Uracil-5-)-methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|260093223|gb|EEW77156.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae RdAW]
          Length = 363

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/361 (56%), Positives = 266/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME G+ L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|229520057|ref|ZP_04409485.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae TM 11079-80]
 gi|229342845|gb|EEO07835.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae TM 11079-80]
          Length = 369

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/358 (56%), Positives = 268/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  IY+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYIYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|262404889|ref|ZP_06081443.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC586]
 gi|262348973|gb|EEY98112.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC586]
          Length = 369

 Score =  435 bits (1118), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/358 (56%), Positives = 269/358 (75%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKMVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIN 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|153826308|ref|ZP_01978975.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MZO-2]
 gi|149739976|gb|EDM54155.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MZO-2]
          Length = 369

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/358 (56%), Positives = 268/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|301169567|emb|CBW29168.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 10810]
          Length = 363

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/361 (56%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|27364587|ref|NP_760115.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus CMCP6]
 gi|33301727|sp|Q8DD43|TRMA_VIBVU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|27360706|gb|AAO09642.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus CMCP6]
          Length = 369

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 266/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y+QQLAEKV RL  M   +Q P L++F S   HYRMRAEF +WH+G+++Y+IMF+Q+T+
Sbjct: 10  RYQQQLAEKVQRLTDMFAPYQAPELEVFESPDQHYRMRAEFRVWHEGEEMYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           DAW E A  L+  L+   + + LIGRA K KI LDRDYV E+L V G+   Y+Q+ENSFT
Sbjct: 130 DAWIENAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVVEKLDVNGKPYTYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN + NV+I+RMS++EFT+AM  +REF RLKD  ID+ SY   TIFVDPPRSG+D 
Sbjct: 250 YNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  ILYISCNP++L  +L ILS TH I R ALFDQFPYT HME GV+L RK
Sbjct: 310 DTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLERK 368


>gi|15603668|ref|NP_246742.1| tRNA (uracil-5-)-methyltransferase [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|20178160|sp|Q9CK32|TRMA_PASMU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|12722224|gb|AAK03887.1| TrmA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 365

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/365 (55%), Positives = 271/365 (74%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L I+QY+  LAEK  +L  ++  F  P L +F S   HYRMRAEF IWHD  D YH
Sbjct: 1   MQALLPIEQYDSLLAEKQKKLTALLAPFHAPALAVFPSPVQHYRMRAEFRIWHDKGDFYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ+T++R R+D F   S LIN +M  ++  ++   +L  KLFQIDYL++ S++ IV+
Sbjct: 61  IMFDQRTRQRYRVDCFPMASQLINQMMDTLLPLLKTNRVLHHKLFQIDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ LD+ W + A +L+ +L  + + +QLIGRA+K KICL++++VDE LTV G++ +Y
Sbjct: 121 LLYHKTLDEEWEQAAKQLKASLLQQGFDLQLIGRASKQKICLEQEFVDEVLTVHGKSYVY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIA
Sbjct: 181 RQVENSFTQPNAIVNQKMLEWAVDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA++NIA N + N++I+RMS++EFTQAM   REF+RLK ID+++Y   TIFVDPP
Sbjct: 241 KPSVAAAQFNIAENSIKNLQIIRMSAEEFTQAMNGVREFHRLKGIDLNAYECNTIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD+ TV +VQ Y  ILYISCNP +LC +L  L  TH IE+ ALFDQFPYT HME GV
Sbjct: 301 RAGLDEETVKLVQNYDRILYISCNPHTLCDNLQHLCQTHRIEKAALFDQFPYTEHMEAGV 360

Query: 361 LLVRK 365
            L+RK
Sbjct: 361 WLIRK 365


>gi|148826507|ref|YP_001291260.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittEE]
 gi|166988117|sp|A5UDM6|TRMA_HAEIE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|148716667|gb|ABQ98877.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittEE]
          Length = 363

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/361 (56%), Positives = 264/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S  IN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASTQINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|15640185|ref|NP_229812.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591770|ref|ZP_01678974.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 2740-80]
 gi|147674711|ref|YP_001218267.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395]
 gi|153820136|ref|ZP_01972803.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae NCTC 8457]
 gi|227080389|ref|YP_002808940.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae M66-2]
 gi|229508429|ref|ZP_04397933.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae BX 330286]
 gi|254851540|ref|ZP_05240890.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MO10]
 gi|262167005|ref|ZP_06034723.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae RC27]
 gi|298501084|ref|ZP_07010884.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MAK 757]
 gi|20178172|sp|Q9KVJ0|TRMA_VIBCH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|172047522|sp|A5F4M4|TRMA_VIBC3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|254789081|sp|C3LPZ5|TRMA_VIBCM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|9654556|gb|AAF93331.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546367|gb|EAX56626.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 2740-80]
 gi|126509317|gb|EAZ71911.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae NCTC 8457]
 gi|146316594|gb|ABQ21133.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395]
 gi|227008277|gb|ACP04489.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae M66-2]
 gi|227011845|gb|ACP08055.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395]
 gi|229354702|gb|EEO19624.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae BX 330286]
 gi|254847245|gb|EET25659.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MO10]
 gi|262024589|gb|EEY43272.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae RC27]
 gi|297540118|gb|EFH76179.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MAK 757]
          Length = 369

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/358 (56%), Positives = 267/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|145628253|ref|ZP_01784054.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21]
 gi|144980028|gb|EDJ89687.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21]
          Length = 363

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/361 (55%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFNSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLKRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME G+ L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|229508890|ref|ZP_04398380.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae B33]
 gi|229606702|ref|YP_002877350.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MJ-1236]
 gi|255743897|ref|ZP_05417852.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholera CIRS 101]
 gi|229354007|gb|EEO18940.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae B33]
 gi|229369357|gb|ACQ59780.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MJ-1236]
 gi|255738380|gb|EET93770.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholera CIRS 101]
          Length = 369

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/358 (56%), Positives = 267/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITVAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|59713043|ref|YP_205819.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri ES114]
 gi|197336423|ref|YP_002157222.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11]
 gi|75431447|sp|Q5E215|TRMA_VIBF1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705995|sp|B5FCA6|TRMA_VIBFM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|59481144|gb|AAW86931.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri ES114]
 gi|197317913|gb|ACH67360.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11]
          Length = 368

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 199/360 (55%), Positives = 266/360 (73%), Gaps = 2/360 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + Y+ QL EK + L  M   F VP L++F S   +YRMRAEF +WH+GD++Y++MF+Q+T
Sbjct: 9   ENYQVQLDEKAEALSAMFSEFNVPELEVFSSPAENYRMRAEFRVWHEGDEMYYVMFNQET 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           KE+ R+DYF+P S LIN LM  +   ++    LR K+FQ+D+L++ S + +V+++YHR L
Sbjct: 69  KEKYRVDYFLPASRLINDLMPLLTEAVKESKTLRYKMFQVDFLSTLSGEILVSMLYHRQL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           DDAW+E A  L+  L+   + + +IGRA K KI LD+++V E+L V    L Y+Q+ENSF
Sbjct: 129 DDAWKEEAKALKQRLNDEGFNLNIIGRARKMKIVLDQEFVIEKLKVNDDILTYKQVENSF 188

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSV++A
Sbjct: 189 TQPNGIVAQKMLEWAVDCTQNSQGDLLELYCGNGNFSLALAKNFDRVLATELAKPSVDSA 248

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLD 305
           +YNIAAN+++NV+I+RMS+++FT AM  +REF RLKD  ID+ SY   TIFVDPPRSG+D
Sbjct: 249 QYNIAANNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNIDLKSYNCNTIFVDPPRSGMD 308

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + T  MVQ Y  I+YISCNP++L  +L ILS TH I R ALFDQFPYT HME GV L RK
Sbjct: 309 EGTCKMVQGYERIMYISCNPETLKENLEILSQTHNITRFALFDQFPYTHHMEAGVFLERK 368


>gi|145636589|ref|ZP_01792256.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH]
 gi|145270115|gb|EDK10051.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH]
          Length = 363

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/361 (55%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLAEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME G+ L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|229527105|ref|ZP_04416499.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 12129(1)]
 gi|229335336|gb|EEO00819.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 12129(1)]
          Length = 369

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/358 (56%), Positives = 267/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPKLEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T   +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTHESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|319775220|ref|YP_004137708.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3047]
 gi|317449811|emb|CBY86019.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3047]
          Length = 363

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/361 (56%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTNHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHCIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|262163703|ref|ZP_06031444.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM223]
 gi|262027919|gb|EEY46583.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM223]
          Length = 369

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/358 (56%), Positives = 268/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++   +LR KLFQ+D+L++ S + +V+L+YHR L++
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQLNE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWNTAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +++ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|145638350|ref|ZP_01793960.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittII]
 gi|145272679|gb|EDK12586.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittII]
 gi|309751491|gb|ADO81475.1| tRNA m(5)U54 methyltransferase [Haemophilus influenzae R2866]
          Length = 363

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/361 (55%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLKRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME G+ L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|28899713|ref|NP_799318.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361664|ref|ZP_05774691.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus K5030]
 gi|260879374|ref|ZP_05891729.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260897201|ref|ZP_05905697.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|33301718|sp|Q87KN8|TRMA_VIBPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|28807965|dbj|BAC61202.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089331|gb|EFO39026.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308092833|gb|EFO42528.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308111286|gb|EFO48826.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus K5030]
 gi|328472459|gb|EGF43325.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 10329]
          Length = 369

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/359 (56%), Positives = 268/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT
Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIILDRDYVIEKLDVNGQSYIYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+RMS++EFT+AM  +REF RLKD  +D+ SY   TIFVDPPR+G+D 
Sbjct: 250 YNIAANKIDNVQIIRMSAEEFTEAMEGKREFRRLKDNGVDLKSYNCNTIFVDPPRAGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNP++L  +L ILS TH + R ALFDQFPYT HME GVLL RK
Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILSETHNVTRFALFDQFPYTHHMEAGVLLERK 368


>gi|319897658|ref|YP_004135855.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3031]
 gi|317433164|emb|CBY81538.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3031]
          Length = 363

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/361 (56%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTNHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|254292223|ref|ZP_04962988.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae AM-19226]
 gi|150421859|gb|EDN13841.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae AM-19226]
          Length = 369

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/358 (56%), Positives = 266/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M   + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFADYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T   +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTHESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|145630596|ref|ZP_01786376.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021]
 gi|144983986|gb|EDJ91428.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021]
          Length = 363

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/361 (55%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLKEQGFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME G+ L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|254227154|ref|ZP_04920690.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae V51]
 gi|125620322|gb|EAZ48720.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae V51]
          Length = 369

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/357 (56%), Positives = 267/357 (74%), Gaps = 2/357 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWISAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQENKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367


>gi|258622817|ref|ZP_05717834.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM573]
 gi|258584878|gb|EEW09610.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM573]
          Length = 369

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/358 (56%), Positives = 268/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++   +LR KLFQ+D+L++ S + +V+L+YHR L++
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQLNE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWVTAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +++ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|260771656|ref|ZP_05880576.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio metschnikovii CIP
           69.14]
 gi|260613433|gb|EEX38632.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio metschnikovii CIP
           69.14]
          Length = 369

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/360 (56%), Positives = 268/360 (74%), Gaps = 2/360 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + Y  QLAEK+ RL +M   + VP L++F S   +YRMRAEF +WH+GD++Y++MF+  T
Sbjct: 9   EHYSAQLAEKITRLTEMFQPYHVPKLEVFESPKQYYRMRAEFRVWHEGDEMYYVMFNPTT 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+LIYHR L
Sbjct: 69  REKYRVDQFPAASRLINDLMPLLIEAMQGNKTLRHKLFQVDFLSTLSGELLVSLIYHRQL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D+AW   A +L+  L+   + + +IGRA K KI LDRDYV E+L V  +  +Y+Q+ENSF
Sbjct: 129 DEAWTSEAKQLKQRLNDEGFNLNVIGRARKMKIVLDRDYVVEKLHVNDKAYLYQQVENSF 188

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A
Sbjct: 189 TQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESA 248

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLD 305
           +YNIAANH++NV+I+RMS+++FTQAM  +REFNRLK+  ID+ SYR  TIFVDPPR+G+D
Sbjct: 249 QYNIAANHIDNVQIIRMSAEDFTQAMEGKREFNRLKEAGIDLKSYRCNTIFVDPPRAGMD 308

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             T  MVQ Y  ILYISCNP++L  +L ILSTTH I R ALFDQFPYT HME GV+L RK
Sbjct: 309 VDTCKMVQGYERILYISCNPETLKENLDILSTTHNITRFALFDQFPYTHHMEAGVMLERK 368


>gi|229844717|ref|ZP_04464856.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 6P18H1]
 gi|229812431|gb|EEP48121.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 6P18H1]
          Length = 363

 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/361 (55%), Positives = 264/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+  D YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQSDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASTLINRMMQILLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EI+KPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEISKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGARAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|297581790|ref|ZP_06943711.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC385]
 gi|297533884|gb|EFH72724.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC385]
          Length = 369

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/357 (56%), Positives = 266/357 (74%), Gaps = 2/357 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPY  HME GVLL R
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYAHHMEAGVLLER 367


>gi|262172910|ref|ZP_06040588.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus MB-451]
 gi|261893986|gb|EEY39972.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus MB-451]
          Length = 369

 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/358 (56%), Positives = 268/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++   +LR KLFQ+D+L++ S + +V+L+YHR L++
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQLNE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +++ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVILERK 368


>gi|119773334|ref|YP_926074.1| tRNA (uracil-5-)-methyltransferase [Shewanella amazonensis SB2B]
 gi|262827940|sp|A1S1Z8|TRMA_SHEAM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|119765834|gb|ABL98404.1| tRNA (uracil-5-)-methyltransferase [Shewanella amazonensis SB2B]
          Length = 365

 Score =  431 bits (1108), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/357 (57%), Positives = 260/357 (72%), Gaps = 1/357 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QYEQQL +K   L +    +  P L++F S P HYRMR EF +WHDGDDLY+ MFD   K
Sbjct: 10  QYEQQLEQKCQALTEAFAHYNPPALEVFPSAPAHYRMRCEFRVWHDGDDLYYCMFDNVAK 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E++R D F+P S LIN +M  ++  +R    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKVRTDQFLPASELINRMMPALLDELRPNRALRHKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W   A  L+  L    +++ +IGRA K K  LDRD+V E L V G+TL Y+Q+ENSFT
Sbjct: 130 DQWLTEARALKARL-GEHFKVDIIGRARKQKFVLDRDFVVESLDVDGKTLHYKQVENSFT 188

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNAG+ V MLEW L ATK   GDLLELYCGNGNFS+ LA +F +VLA E+AKPSVEAA+
Sbjct: 189 QPNAGVAVKMLEWALDATKQSSGDLLELYCGNGNFSIALAPNFGKVLATELAKPSVEAAQ 248

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           YNI  N V+N+ IVRMS++EFT+AM+ E+ FNRL DID+ SY+  TIFVDPPR+GLDD T
Sbjct: 249 YNIQVNKVSNLDIVRMSAEEFTEAMKGEKRFNRLGDIDLQSYQCNTIFVDPPRAGLDDET 308

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           V +VQ Y +ILYISCNPD+L  +L +LS TH + R ALFDQFPYT H E GV+L R+
Sbjct: 309 VKLVQGYENILYISCNPDTLNDNLKVLSETHEVVRFALFDQFPYTHHTEAGVMLKRR 365


>gi|260774785|ref|ZP_05883687.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609210|gb|EEX35365.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 369

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/356 (57%), Positives = 267/356 (75%), Gaps = 2/356 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL +M   + VP L++F S   HYRMRAEF +WH+GDDLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLNEMFAPYHVPELEVFESPEQHYRMRAEFRVWHEGDDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLIDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W + A  L+  L+   + + LIGRA K KI LDRDYV E+L V G+  +Y+Q+ENSFT
Sbjct: 130 DEWTKNAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGQPYVYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T   QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+
Sbjct: 190 QPNGKVAEKMLEWAIDCTNESQGDLLELYCGNGNFSLALAQNFNRVLATELAKPSVESAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN+++NV+I+R+S++EFTQA+  +REF RLKD  +D+ SY   TIFVDPPRSG+D 
Sbjct: 250 YNIAANNIDNVQILRLSAEEFTQAIEGKREFRRLKDAGVDLKSYNCNTIFVDPPRSGMDI 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            T  MVQ Y  ILYISCNP++L  +L +LS TH I R ALFDQFPYT HME G+LL
Sbjct: 310 DTCKMVQGYERILYISCNPETLKDNLDVLSETHNITRFALFDQFPYTHHMEAGILL 365


>gi|261210143|ref|ZP_05924440.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC341]
 gi|260840683|gb|EEX67232.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC341]
          Length = 369

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/358 (56%), Positives = 266/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  IY+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYIYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+   GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQESNGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  + + SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVVLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP +L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 311 TCKMVQGYERILYISCNPKTLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368


>gi|153831375|ref|ZP_01984042.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 623-39]
 gi|148873143|gb|EDL71278.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 623-39]
          Length = 355

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/354 (56%), Positives = 265/354 (74%), Gaps = 2/354 (0%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           LA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E+ R+
Sbjct: 1   LADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETREKYRV 60

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L + W  
Sbjct: 61  DQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWIT 120

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
            A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQPNA 
Sbjct: 121 AAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQPNAK 180

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++NIAA
Sbjct: 181 VAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAA 240

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGM 311
           N + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  T  M
Sbjct: 241 NQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKM 300

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           VQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 301 VQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 354


>gi|145632206|ref|ZP_01787941.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 3655]
 gi|145634738|ref|ZP_01790446.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittAA]
 gi|144987113|gb|EDJ93643.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 3655]
 gi|145267904|gb|EDK07900.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittAA]
          Length = 363

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/361 (55%), Positives = 263/361 (72%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+  D YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQSDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASTLINRMMQILLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|262273152|ref|ZP_06050968.1| tRNA (Uracil54-C5-)-methyltransferase [Grimontia hollisae CIP
           101886]
 gi|262222730|gb|EEY74039.1| tRNA (Uracil54-C5-)-methyltransferase [Grimontia hollisae CIP
           101886]
          Length = 368

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/368 (56%), Positives = 269/368 (73%), Gaps = 3/368 (0%)

Query: 1   MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           MS TL+   QY+ QL EK+ R++    AF  P L++F S   HYRMRAEF +WH+GDDLY
Sbjct: 1   MSNTLIDTTQYQAQLDEKIARMQSAFEAFNAPELEVFPSPDKHYRMRAEFRVWHEGDDLY 60

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           +IMF+Q+TK++ R+D F   S +IN LM  ++  I+    LR KLFQ+D+L++ S + +V
Sbjct: 61  YIMFNQETKQKYRVDQFPQASRIINDLMPLLLDAIKPVESLRRKLFQVDFLSTLSGEVLV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +++YHR LD+ W   A  L+  L+   + + LIGRA K KI +DRDYV E+L+V  RTL 
Sbjct: 121 SMLYHRQLDEEWEANARMLKQRLNDEGFNLNLIGRARKQKIVIDRDYVVEKLSVNDRTLT 180

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q+ENSFTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA +FDRVLA E+
Sbjct: 181 YQQVENSFTQPNGKVAEKMLEWAIDCTQDSTGDLLELYCGNGNFSLALAENFDRVLATEL 240

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297
           AKPSVE+A++NIAAN+++NV+I+RMS++EFT+AM  +REF RL+   ID+ SY   TIFV
Sbjct: 241 AKPSVESAQWNIAANNIDNVQIIRMSAEEFTEAMEGKREFRRLQQAGIDLKSYHCNTIFV 300

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPRSG+D+ T  MVQ Y  ILYISCNP++L  +L ILS TH I R ALFDQFPYT HME
Sbjct: 301 DPPRSGMDEGTCRMVQGYDRILYISCNPETLKENLEILSETHRITRFALFDQFPYTHHME 360

Query: 358 CGVLLVRK 365
            GVLL RK
Sbjct: 361 AGVLLERK 368


>gi|261249984|ref|ZP_05942561.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio orientalis CIP
           102891]
 gi|260939488|gb|EEX95473.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio orientalis CIP
           102891]
          Length = 369

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/358 (56%), Positives = 267/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y++QLA+KVDRL +M  ++ VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+E
Sbjct: 11  YQEQLADKVDRLNEMFASYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KYRVDQFPAASRLINDLMPLLVDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W + A  L+  L+   + + +IGRA K KI LDRDYV E+L V G+  IY+Q+ENSFTQ
Sbjct: 131 EWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGKPYIYQQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+Y
Sbjct: 191 PNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN ++NV+I+R+S++EFT+A+  +REF RLKD  +D+HSY   TIFVDPPRSG+D  
Sbjct: 251 NIAANKIDNVQILRLSAEEFTEAIEGKREFRRLKDAGVDLHSYNCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  I+YISCNP++L  +L +L  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 311 TCKMVQGYERIMYISCNPETLKENLDVLCETHNVTRFALFDQFPYTHHMEAGVLLERK 368


>gi|258626050|ref|ZP_05720905.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM603]
 gi|258581670|gb|EEW06564.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM603]
          Length = 369

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/355 (56%), Positives = 266/355 (74%), Gaps = 2/355 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++   +LR KLFQ+D+L++ S + +V+L+YHR L++
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQLNE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +++ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GVLL
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVLL 365


>gi|239994745|ref|ZP_04715269.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 365

 Score =  428 bits (1101), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 192/357 (53%), Positives = 264/357 (73%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y+ QL EKV+RL  ++  F  P+L +F S+P HYRMRAEF +WH+GDDL+HIMF+Q+TK
Sbjct: 8   RYQAQLDEKVERLTALLSPFNAPDLTVFPSQPTHYRMRAEFRVWHEGDDLFHIMFNQETK 67

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F P    IN  M  ++  +R    LR KLFQIDYL++ S + +++L+YHR LD
Sbjct: 68  EKYRVDSFPPACKAINDAMALLLKEVRPNEALRKKLFQIDYLSALSGELVISLLYHRQLD 127

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W+E A  L+  L A   ++ +IGRA K K+ +D D+V ERL V G+  I++ IENSFT
Sbjct: 128 EKWQEAAKELKAKLEAHFPKVNIIGRARKQKLIIDNDFVIERLPVNGKEFIFKHIENSFT 187

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N  M+EW L   K + GDLLE+YCG GNFSL LA HFD V+  EIAKPSV+AA+
Sbjct: 188 QPNAEVNCSMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 247

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NI  N +NNVKIVR++++EFTQAM+ ER F+RL+ ID+ +Y F T+ VDPPR+GLD+ +
Sbjct: 248 FNIEQNQLNNVKIVRLAAEEFTQAMKGERTFSRLEGIDLSAYNFTTVLVDPPRAGLDEDS 307

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK
Sbjct: 308 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 364


>gi|153835643|ref|ZP_01988310.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi HY01]
 gi|148867739|gb|EDL66997.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi HY01]
          Length = 369

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/359 (56%), Positives = 266/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT
Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPRSG+D 
Sbjct: 250 YNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNPD+L  +L IL  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 310 DTCKMVQGYERIMYISCNPDTLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368


>gi|303250361|ref|ZP_07336560.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253670|ref|ZP_07535537.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650831|gb|EFL80988.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306858906|gb|EFM90952.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 368

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/367 (55%), Positives = 265/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58
            L I+QY   LAEK   L  ++  F  P L++F SE  H+RMRAEF +WHD ++     L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R+D F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++QLIGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQTEAAALKVRLEHQGFKVQLIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + TK   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTKNSTGDLLELYCGNGNFSIALAENFRQVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMSGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLQQLSQTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|323495308|ref|ZP_08100388.1| tRNA (uracil-5-)-methyltransferase [Vibrio brasiliensis LMG 20546]
 gi|323310443|gb|EGA63627.1| tRNA (uracil-5-)-methyltransferase [Vibrio brasiliensis LMG 20546]
          Length = 369

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/358 (55%), Positives = 268/358 (74%), Gaps = 2/358 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKVDRL +M  ++ VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVDRLNEMFASYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPVASRLINDLMPLLIEAMKGSDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W + A  L+  L+   + + +IGRA K KI LDRDYV E+L V G+  +Y+Q+ENSFT
Sbjct: 130 DEWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQPYVYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNI AN+++NV+I+R+S++EFTQA+  +REF RLKD  +D++SY   TIFVDPPR+G+D 
Sbjct: 250 YNIKANNIDNVQILRLSAEEFTQAIEGKREFRRLKDAGVDLNSYNCNTIFVDPPRAGMDI 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFP+T HME GVLL R
Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHKVTRFALFDQFPFTHHMEAGVLLER 367


>gi|323498754|ref|ZP_08103741.1| tRNA (uracil-5-)-methyltransferase [Vibrio sinaloensis DSM 21326]
 gi|323316182|gb|EGA69206.1| tRNA (uracil-5-)-methyltransferase [Vibrio sinaloensis DSM 21326]
          Length = 368

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 200/359 (55%), Positives = 268/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL +M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLTEMFSPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  +M  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPTASRLINDLMPLLMDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W + A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ +Y+Q+ENSFT
Sbjct: 130 DEWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYVYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQDSSGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPR+G+D 
Sbjct: 250 YNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNP++L  +L ILS TH + R ALFDQFP+T HME GVLL RK
Sbjct: 310 DTCKMVQGYERIMYISCNPETLKDNLDILSETHKVTRFALFDQFPFTHHMEAGVLLERK 368


>gi|90407368|ref|ZP_01215553.1| tRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3]
 gi|90311519|gb|EAS39619.1| tRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3]
          Length = 365

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 192/358 (53%), Positives = 270/358 (75%), Gaps = 1/358 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           D Y+ QL  K     +  + F +P+L+IF S  +HYRMR+EF +WH+GDDLY+IMFD++T
Sbjct: 9   DNYDMQLNAKKTLFNEQFVDFNLPDLEIFASPKLHYRMRSEFRVWHEGDDLYYIMFDKET 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K+++R+D F P S LINALM +++  I++   LR KLFQID+L++ S Q +V+L+YH+ L
Sbjct: 69  KQKIRVDQFPPASELINALMPQLINLIKVSKTLRFKLFQIDFLSTLSGQILVSLLYHKQL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D+ W E    L+  L ++++ I  +GRA K K+ LD+D+V E L V G+TLIY+Q+ENSF
Sbjct: 129 DEQWVEELNALKATL-SKQFDINFMGRAKKQKLILDKDHVIESLEVDGKTLIYQQVENSF 187

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +++ MLEW +  T+  +GDLLELYCGNGNFS+ LA++F++VLA EIAKPSV +A
Sbjct: 188 TQPNTEVSIKMLEWAIDCTRNSEGDLLELYCGNGNFSIALAKNFNKVLATEIAKPSVHSA 247

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +YNIAANH++N+ I+RMS++EFTQA+ + R F+RL+ I++  Y+  TIFVDPPR+GLDD 
Sbjct: 248 QYNIAANHIDNLTIIRMSAEEFTQALNKVRVFHRLEGINLDDYQCNTIFVDPPRAGLDDE 307

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T+ MVQ Y +ILYISCNP++L  +L     TH +ER ALFDQFPYT H E GV L+++
Sbjct: 308 TIKMVQTYDNILYISCNPETLKSNLQQFDATHKVERFALFDQFPYTHHTEAGVYLIKR 365


>gi|156972610|ref|YP_001443517.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|166988122|sp|A7MXY6|TRMA_VIBHB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|156524204|gb|ABU69290.1| hypothetical protein VIBHAR_00262 [Vibrio harveyi ATCC BAA-1116]
          Length = 369

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/359 (55%), Positives = 266/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT
Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPRSG+D 
Sbjct: 250 YNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368


>gi|127511072|ref|YP_001092269.1| tRNA (uracil-5-)-methyltransferase [Shewanella loihica PV-4]
 gi|171855240|sp|A3Q962|TRMA_SHELP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|126636367|gb|ABO22010.1| tRNA (uracil-5-)-methyltransferase [Shewanella loihica PV-4]
          Length = 365

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 191/357 (53%), Positives = 269/357 (75%), Gaps = 1/357 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QY+ QL  K  +L Q+ + F+ P L++F S+  HYRMRAEF +WH+G+DLY+ MFD+   
Sbjct: 10  QYDAQLDVKRQKLAQLFVDFETPELEVFASQKAHYRMRAEFRVWHEGEDLYYYMFDKAQN 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           +++R + F+P S LIN +M E+MA +R  P+LR KLFQ+D+L++ S + +V+L+YH+ LD
Sbjct: 70  QKIRCEQFLPASQLINDMMPELMAALRPNPVLRHKLFQVDFLSTLSGEILVSLLYHKQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
             W+E A  L++AL + K+++ +IGRA K K+ +DRD+V E L V G+ L Y+Q+ENSFT
Sbjct: 130 AQWQEEAQALKEALSS-KFKVDIIGRARKQKLVMDRDFVIESLPVNGKQLTYKQVENSFT 188

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  + + MLEW +  T+   GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV++A+
Sbjct: 189 QPNGEVAIKMLEWAIDITRDSSGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDSAQ 248

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           YNI AN ++N++I+RMS+++FT A+ ++R F RL+ +D+ SY   TIFVDPPR+GLDD T
Sbjct: 249 YNIEANQIDNLQIIRMSAEDFTDALAKKRSFRRLEGVDLDSYDCNTIFVDPPRAGLDDNT 308

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + MVQ Y  ILYISCNP++L  +L +L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 309 LSMVQGYERILYISCNPNTLLDNLKVLDKTHKITRFALFDQFPYTDHMESGVLLERR 365


>gi|269961495|ref|ZP_06175858.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi 1DA3]
 gi|269833724|gb|EEZ87820.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi 1DA3]
          Length = 369

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/359 (55%), Positives = 266/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT
Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPRSG+D 
Sbjct: 250 YNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368


>gi|88861402|ref|ZP_01136031.1| tRNA (Uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) (RUMT)
           [Pseudoalteromonas tunicata D2]
 gi|88816577|gb|EAR26403.1| tRNA (Uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) (RUMT)
           [Pseudoalteromonas tunicata D2]
          Length = 365

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 194/356 (54%), Positives = 264/356 (74%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YEQQL EK   +      F V +L++F SE  HYR RAEF +WHDG+DL+HIMFDQQ+KE
Sbjct: 11  YEQQLNEKKHTIAAQFARFGVNDLEVFASEEKHYRQRAEFRVWHDGEDLFHIMFDQQSKE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R++ F P + LI ALM  ++A ++ + +LR KLFQIDYL++ S + +V+++YH+ LDD
Sbjct: 71  KIRVEQFDPAAPLIFALMPRLIAELKTKEVLRRKLFQIDYLSTLSGEILVSMLYHKALDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W      L++ L   ++ I  IGRA K KI L ++YV E+LTVAG+ L+Y+Q+ENSFTQ
Sbjct: 131 EWLTAIKELKNKLSG-EFNIDFIGRARKQKIALGKEYVVEKLTVAGKQLVYQQVENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +N  MLEW L  ++ +  DLLELYCGNGNFS+ LA  F+RVLA EI+K SV +A++
Sbjct: 190 PNAKVNQKMLEWALDISQNLSNDLLELYCGNGNFSIALAPAFNRVLATEISKSSVASAQF 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NIA N + N+ I+RMSS+EFT+AM+ E+EF+RLK ID+ SY  ++I VDPPR+GLD+ T 
Sbjct: 250 NIAENKITNLDIIRMSSEEFTEAMKGEKEFSRLKGIDLKSYNCQSILVDPPRAGLDEGTT 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y +I+YISCNP +L RDL +L+ TH +ER A+FDQFPYT H+E GV L RK
Sbjct: 310 RLVQNYDNIIYISCNPQTLERDLEVLTQTHKVERFAIFDQFPYTHHIESGVFLTRK 365


>gi|89074503|ref|ZP_01160980.1| tRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34]
 gi|89049791|gb|EAR55341.1| tRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34]
          Length = 368

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/368 (54%), Positives = 271/368 (73%), Gaps = 3/368 (0%)

Query: 1   MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           M+ T+L    Y+QQL EK +R++ +   F  P L++F S   HYRMRAEF +WH+G+DL+
Sbjct: 1   MTSTILNTADYQQQLDEKTERIQNICADFDTPELEVFASPAEHYRMRAEFRVWHEGEDLF 60

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           +IMF+Q+T+E+ R+D F   S LIN LM  ++  I+    LR KLFQ+D+L++ S + +V
Sbjct: 61  YIMFNQETREKYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +++YHR LDD W   A +L+  L+   +++ LIGRA K KI LD+DYV E+L V  RTL 
Sbjct: 121 SMLYHRQLDDEWTAEAKQLKQRLNDEGFKLNLIGRARKMKIVLDQDYVIEQLKVHDRTLT 180

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q+ENSFTQPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+
Sbjct: 181 YKQVENSFTQPNGEVAQKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATEL 240

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297
           AKPSV++A+YNIA N+++NV+I+RMS+++FT AM  +REF RLKD  +D+ SY   TIFV
Sbjct: 241 AKPSVDSAQYNIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNVDLQSYNCNTIFV 300

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPRSG+D+ T  MVQ Y  I+YISCNP++L  +L IL  TH I R ALFDQFPYT HME
Sbjct: 301 DPPRSGMDEGTCRMVQGYERIMYISCNPETLKENLDILCQTHKITRFALFDQFPYTHHME 360

Query: 358 CGVLLVRK 365
            GVLLVRK
Sbjct: 361 AGVLLVRK 368


>gi|307246918|ref|ZP_07528983.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255900|ref|ZP_07537701.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307260353|ref|ZP_07542060.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852203|gb|EFM84443.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861168|gb|EFM93161.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865604|gb|EFM97485.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 368

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/367 (55%), Positives = 266/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58
            L I+QY   LAEK   L  +++ F  P L++F SE  H+RMRAEF +WHD ++     L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRQVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLQQLSQTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|254509266|ref|ZP_05121360.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16]
 gi|219547820|gb|EED24851.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16]
          Length = 368

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/359 (55%), Positives = 267/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL +M   +  P L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLTEMFAPYNAPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLVDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W + A  L+  L+   + + +IGRA K KI LDRDYV E+L V G+  IY+Q+ENSFT
Sbjct: 130 DEWTKNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGKPYIYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSV +A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQDSQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVISAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+R+S++EFT+A+  +REF RLKD  +D+ SY   TIFVDPPR+G+D 
Sbjct: 250 YNIAANKIDNVQILRLSAEEFTEAIEGKREFRRLKDAGVDLKSYNCNTIFVDPPRAGMDI 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  ILYISCNP++L  +L +LS TH + R ALFDQFP+T HME GV+L RK
Sbjct: 310 DTCKMVQGYERILYISCNPETLKENLDVLSETHNVTRFALFDQFPFTHHMEAGVMLERK 368


>gi|312884418|ref|ZP_07744123.1| tRNA (uracil-5-)-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367940|gb|EFP95487.1| tRNA (uracil-5-)-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 369

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/367 (53%), Positives = 268/367 (73%), Gaps = 4/367 (1%)

Query: 3   GTLLID--QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
            TL +D   Y++QL++KV  L  +  +F  P L++F S   HYRMRAEF +WH+GDDLY+
Sbjct: 2   ATLDVDPRHYQKQLSDKVSCLNDLFASFDTPELEVFESPKQHYRMRAEFRVWHEGDDLYY 61

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           +MF+QQT+E+ R+D F   S LIN LM E++  +++   LR KLFQ+D+L++ S + +V+
Sbjct: 62  VMFNQQTREKYRVDQFPAASQLINDLMPELIDAMKVNDSLRHKLFQVDFLSTLSGEVLVS 121

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YHR LDD W E A  L+  L  + + + +IGRA K K+ LDRDYV E+L V G+   Y
Sbjct: 122 LLYHRQLDDEWTENAKALKQQLIDKGFNLNIIGRARKMKVVLDRDYVIEKLDVNGKAYTY 181

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +Q+ENSFTQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+A
Sbjct: 182 QQVENSFTQPNGKVAEKMLEWAIDCTQDSQGDLLELYCGNGNFSLALAQNFNRVLATELA 241

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVD 298
           KPSVE+A+YNI  N + NV+I+R+S++EFTQA+  +REF RLKD  +++ SY   TIFVD
Sbjct: 242 KPSVESAQYNIQVNQIENVQILRLSAEEFTQAIEGKREFRRLKDAGVELDSYNCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPRSG+D  T  MVQ Y  I+YISCNP++L  +LS+LS TH I R ALFDQFPYT HME 
Sbjct: 302 PPRSGMDIDTCKMVQGYERIIYISCNPETLKDNLSLLSQTHKITRFALFDQFPYTHHMEA 361

Query: 359 GVLLVRK 365
           G++L ++
Sbjct: 362 GIVLEKR 368


>gi|114561313|ref|YP_748826.1| tRNA (uracil-5-)-methyltransferase [Shewanella frigidimarina NCIMB
           400]
 gi|122301133|sp|Q089S7|TRMA_SHEFN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|114332606|gb|ABI69988.1| tRNA (uracil-5-)-methyltransferase [Shewanella frigidimarina NCIMB
           400]
          Length = 365

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/356 (55%), Positives = 266/356 (74%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL +K  +L +    F  P L++F SEP+HYRMRAEF +WH GDDLY+ MFD+    
Sbjct: 11  YDAQLQQKRIKLEKAFADFNPPALEVFASEPMHYRMRAEFRMWHQGDDLYYYMFDKALNA 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D ++P  L+IN +M  ++A +   P LR +LFQ+D+L++ S + +V+L+YHR LD+
Sbjct: 71  KVRCDQYLPAGLIINQMMAALIAELTPNPALRYRLFQVDFLSTLSGEILVSLLYHRQLDE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            WRE A +L+  L A ++ + +IGRA K KI LD+D+V E LTV  + L Y+QIENSFTQ
Sbjct: 131 EWREQATQLKAKLSA-QFNVNIIGRARKQKIDLDKDFVVETLTVNEQVLHYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA ++V MLEW + ATK  QGDLLELYCGNGNF++ LAR+F+RVLA E+AKPSV+AA+Y
Sbjct: 190 PNAKVSVKMLEWAIDATKDSQGDLLELYCGNGNFTIALARNFNRVLATELAKPSVDAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  NHV+NV+I+RMS+++F+ AM ++R+F RL+ ID+ SY   TIFVDPPR+G+D  T+
Sbjct: 250 NIDINHVDNVQIIRMSAEDFSDAMAKKRQFRRLEGIDLDSYDCNTIFVDPPRAGIDPETL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            ++Q Y  ILYISCNP++L  +L  L  TH I R ALFDQFPYT HME GVLLVRK
Sbjct: 310 KLIQGYERILYISCNPETLNDNLLTLGQTHKITRFALFDQFPYTDHMESGVLLVRK 365


>gi|90581101|ref|ZP_01236901.1| tRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
 gi|90437797|gb|EAS62988.1| tRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
          Length = 368

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/368 (54%), Positives = 271/368 (73%), Gaps = 3/368 (0%)

Query: 1   MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           M+ T+L    Y+QQL EK +R++ + + F  P L++F S   HYRMRAEF +WH+G+DL+
Sbjct: 1   MTSTILNTAGYQQQLDEKAERIQNIFVDFDTPELEVFASPAEHYRMRAEFRVWHEGEDLF 60

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           +IMF+Q+T+E+ R+D F   S LIN LM  ++  I+    LR KLFQ+D+L++ S + +V
Sbjct: 61  YIMFNQETREKYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +++YHR LDD W   A +L+  L+   +++ LIGRA K KI LD+DYV E+L V  RTL 
Sbjct: 121 SMLYHRQLDDEWTAEAKQLKQRLNDEGFKLNLIGRARKMKIVLDQDYVIEQLKVHDRTLT 180

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q+ENSFTQPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+
Sbjct: 181 YKQVENSFTQPNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAQNFERVLATEL 240

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297
           AKPSV++A+YNIA N+++NV+I+RMS+++FT AM  +REF RLKD  +D+ SY   TIFV
Sbjct: 241 AKPSVDSAQYNIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNVDLQSYNCNTIFV 300

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPRSG+D+ T  MVQ Y  I+YISCNP++L  +L IL  TH I R ALFDQFPYT HME
Sbjct: 301 DPPRSGMDEGTCRMVQGYERIMYISCNPETLKENLDILCETHKITRFALFDQFPYTHHME 360

Query: 358 CGVLLVRK 365
            GVLL RK
Sbjct: 361 AGVLLERK 368


>gi|269968661|ref|ZP_06182658.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B]
 gi|269826748|gb|EEZ81085.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B]
          Length = 369

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/359 (55%), Positives = 266/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT
Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPR+G+D 
Sbjct: 250 YNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368


>gi|262392929|ref|YP_003284783.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio sp. Ex25]
 gi|262336523|gb|ACY50318.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio sp. Ex25]
          Length = 369

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/359 (55%), Positives = 266/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL  M   + +P L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLTDMFAPYNMPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT
Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPR+G+D 
Sbjct: 250 YNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGMDA 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368


>gi|307258085|ref|ZP_07539837.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863448|gb|EFM95379.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 368

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58
            L I+QY   LAEK   L  +++ F  P L++F SE  H+RMRAEF +WHD ++     L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R+D F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L+ L+ TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLAQLTRTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
            V L+RK
Sbjct: 362 SVWLIRK 368


>gi|54310518|ref|YP_131538.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum SS9]
 gi|50401422|sp|Q6LLU2|TRMA_PHOPR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|46914961|emb|CAG21736.1| putative tRNA (uracil-5-)-methyltransferase [Photobacterium
           profundum SS9]
          Length = 368

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/358 (55%), Positives = 263/358 (73%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+QQL EK +R++ +   F+ P L++F S   HYRMRAEF +WH+G+DLY++MF+Q+T+E
Sbjct: 11  YQQQLDEKAERIQNIFEDFETPELEVFASPAEHYRMRAEFRMWHEGEDLYYVMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD+
Sbjct: 71  KYRVDQFPAASRLINDLMPLLVEALKPSQTLRHKLFQVDFLSTLSGEILVSLLYHRQLDE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W     +L+  L+   + + +IGRA K KI  DRDYV E+L V  +TL Y+Q+ENSFTQ
Sbjct: 131 EWEVEIKKLKQCLNDEGFNLNIIGRARKMKIVADRDYVIEKLNVFDQTLTYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+Y
Sbjct: 191 PNGEVAQKMLEWAVDCTQDSDGDLLELYCGNGNFSLALAKNFERVLATELAKPSVESAQY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307
           NIA N+++NV+IVRMS+++FT AM  +REF RLK  ++D+ SY   TIFVDPPRSG+D+ 
Sbjct: 251 NIAVNNIDNVQIVRMSAEDFTDAMAGKREFRRLKAQNVDLQSYNCNTIFVDPPRSGMDEG 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  I+YISCNPD+L  +L ILS TH I R ALFDQFPYT HME GVLL RK
Sbjct: 311 TCRMVQGYERIMYISCNPDTLKENLEILSQTHKITRFALFDQFPYTHHMEAGVLLERK 368


>gi|307262483|ref|ZP_07544128.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306867860|gb|EFM99691.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 368

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/367 (54%), Positives = 265/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58
            L I+QY   LAEK   L  ++  F  P L++F SE  H+RMRAEF +WHD ++     L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLLVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + TK   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTKNSTGDLLELYCGNGNFSIALAENFRQVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L+ L+ TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLAQLTRTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
            V L+RK
Sbjct: 362 SVWLIRK 368


>gi|254362737|ref|ZP_04978821.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213]
 gi|153094362|gb|EDN75217.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213]
          Length = 363

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/362 (54%), Positives = 264/362 (72%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL I+QY   LA+K + L  ++  F  P +++F S+P H+RMRAEF +WH+  +LYHIMF
Sbjct: 2   TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           + +TK R R+D F   S LIN +M  ++A I+   LL  KLFQIDYL++ S +  V+++Y
Sbjct: 62  NPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L++ W E A  L+  L  + +++Q+IGRANK KI LD DYV+E L V G+  +YRQ+
Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW    TK  +GDLLELYCGNGNFS+ LA +F +VLA EI+K S
Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V++A+YNI  N + N++I+RMS++EFTQAM   R F RLK ID+++Y   TIFVDPPR+G
Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ MVQAY  ILYISCNP++L  +L  LS TH IE+ ALFDQFPYT H+E GV L+
Sbjct: 302 LDQATLNMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361

Query: 364 RK 365
           RK
Sbjct: 362 RK 363


>gi|165977424|ref|YP_001653017.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|226706004|sp|B0BU06|TRMA_ACTPJ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|165877525|gb|ABY70573.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 368

 Score =  422 bits (1084), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/367 (54%), Positives = 265/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58
            L I+QY   LAEK   L  ++  F  P L++F SE  H+RMRAEF +WHD ++     L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R+D F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q++GRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQILGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  L+ TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLADNLQQLTQTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|261491879|ref|ZP_05988458.1| hypothetical protein COK_0317 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312534|gb|EEY13658.1| hypothetical protein COK_0317 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 363

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/362 (54%), Positives = 263/362 (72%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL I+QY   LA+K + L  ++  F  P +++F S+P H+RMRAEF +WH+  +LYHIMF
Sbjct: 2   TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           +  TK R R+D F   S LIN +M  ++A I+   LL  KLFQIDYL++ S +  V+++Y
Sbjct: 62  NPATKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L++ W E A  L+  L  + +++Q+IGRANK KI LD DYV+E L V G+  +YRQ+
Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW    TK  +GDLLELYCGNGNFS+ LA +F +VLA EI+K S
Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V++A+YNI  N + N++I+RMS++EFTQAM   R F RLK ID+++Y   TIFVDPPR+G
Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ MVQAY  ILYISCNP++L  +L  LS TH IE+ ALFDQFPYT H+E GV L+
Sbjct: 302 LDQATLNMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361

Query: 364 RK 365
           RK
Sbjct: 362 RK 363


>gi|308047961|ref|YP_003911527.1| tRNA (uracil-5-)-methyltransferase [Ferrimonas balearica DSM 9799]
 gi|307630151|gb|ADN74453.1| tRNA (uracil-5-)-methyltransferase [Ferrimonas balearica DSM 9799]
          Length = 364

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/357 (56%), Positives = 262/357 (73%), Gaps = 5/357 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QY+ QL EK +R+R +   F  P L++F SEP HYRMRAEF +WHDGDDL +IMFDQ  +
Sbjct: 10  QYQTQLDEKCERMRALFAPFNAPELEVFPSEPEHYRMRAEFRVWHDGDDLNYIMFDQTQQ 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
            ++ +  ++P S LIN  M  ++  ++ +P+LR KLFQ+D+L++ S + +++L+YHR LD
Sbjct: 70  AKVEVTQYLPASALINEYMPRLIEALKPDPVLRRKLFQVDFLSTLSGELVISLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHAR-KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           DAW + AIR    L AR   ++  IGRA K K+ L++DYVDE L V G+   YRQIEN+F
Sbjct: 130 DAWCD-AIR---ELRARWDNKVHFIGRARKQKVTLEQDYVDEVLHVHGQPYHYRQIENAF 185

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +   MLEW + AT+   GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA
Sbjct: 186 TQPNGKVAEKMLEWAVDATRNSDGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAA 245

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +YNIA N+++NV I+RMS+++FT A+   REF RLK ID+  YR  TIFVDPPR+GLD A
Sbjct: 246 QYNIAKNNIDNVTILRMSAEDFTDAINGVREFRRLKGIDLSGYRCNTIFVDPPRAGLDPA 305

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           T  MVQ Y  ILYISCNP++L  +L  LS TH + RLALFDQFPYT HME GVLL R
Sbjct: 306 TEKMVQGYDRILYISCNPETLLENLKTLSQTHKLSRLALFDQFPYTHHMEAGVLLER 362


>gi|307251253|ref|ZP_07533174.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856769|gb|EFM88904.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 368

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58
            L I++Y   LAEK   L  +++ F  P L++F SE  H+RMRAEF +WHD ++     L
Sbjct: 2   NLPIERYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|330444843|ref|ZP_08308498.1| tRNA (uracil-5-)-methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489153|dbj|GAA02995.1| tRNA (uracil-5-)-methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 368

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/368 (53%), Positives = 270/368 (73%), Gaps = 3/368 (0%)

Query: 1   MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           M+ T+L    Y+QQL EK +R++ +   F  P L++F S   HYRMRAEF +WH+G+DL+
Sbjct: 1   MTSTILNTADYQQQLDEKAERIQNIFADFDTPELEVFASPAEHYRMRAEFRVWHEGEDLF 60

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           +IMF+Q+T+E+ R+D F   S LIN LM  ++  I+    LR KLFQ+D+L++ S + +V
Sbjct: 61  YIMFNQETREKYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +++YHR LDD W   A +L+  L+   +++ +IGRA K KI LD+DYV E+L +  RTL 
Sbjct: 121 SMLYHRQLDDEWTAEAKQLKQRLNDEGFKLNIIGRARKMKIVLDQDYVIEQLKINDRTLT 180

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q+ENSFTQPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+
Sbjct: 181 YKQVENSFTQPNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAQNFERVLATEL 240

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297
           AKPSV++A+YNIA N+++NV+I+RMS+++FT AM  +REF RLK+  +D+ SY   TIFV
Sbjct: 241 AKPSVDSAQYNIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKEQNVDLQSYNCNTIFV 300

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPRSG+D+ T  MVQ Y  I+YISCNP++L  +L IL  TH I R ALFDQFPYT HME
Sbjct: 301 DPPRSGMDEGTCRMVQGYDRIMYISCNPETLKENLDILGETHRITRFALFDQFPYTHHME 360

Query: 358 CGVLLVRK 365
            GVLL RK
Sbjct: 361 AGVLLERK 368


>gi|261494651|ref|ZP_05991131.1| hypothetical protein COI_0439 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309616|gb|EEY10839.1| hypothetical protein COI_0439 [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 363

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/362 (54%), Positives = 264/362 (72%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL I+QY   LA+K + L  ++  F  P +++F S+P H+RMRAEF +WH+  +LYHIMF
Sbjct: 2   TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           + +TK R R+D F   S LIN +M  ++A I+   LL  KLFQIDYL++ S +  V+++Y
Sbjct: 62  NPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L++ W E A  L+  L  + +++Q+IGRANK KI LD DYV+E L V G+  +YRQ+
Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKMQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW    TK  +GDLLELYCGNGNFS+ LA +F +VLA EI+K S
Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V++A+YNI  N + N++I+RMS++EFTQAM   R F RLK ID+++Y   TIFVDPPR+G
Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ MVQAY  ILYISCNP++L  +L  LS TH IE+ ALFDQFPYT H+E GV L+
Sbjct: 302 LDQATLDMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361

Query: 364 RK 365
           RK
Sbjct: 362 RK 363


>gi|190151336|ref|YP_001969861.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303251754|ref|ZP_07337925.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249054|ref|ZP_07531062.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307264691|ref|ZP_07546271.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|226706005|sp|B3GZC6|TRMA_ACTP7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|189916467|gb|ACE62719.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302649184|gb|EFL79369.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854512|gb|EFM86707.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306870003|gb|EFN01767.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 368

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58
            L I++Y   LAEK   L  +++ F  P L++F SE  H+RMRAEF +WHD ++     L
Sbjct: 2   NLPIERYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRQVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|90414701|ref|ZP_01222672.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK]
 gi|90324243|gb|EAS40818.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK]
          Length = 368

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/358 (54%), Positives = 263/358 (73%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+QQL EK +R++ +   F+ P L++F S   HYRMRAEF +WH+G+DLY++MF+Q+T+E
Sbjct: 11  YQQQLDEKAERIQNIFEDFETPELEVFASPAEHYRMRAEFRMWHEGEDLYYVMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD+
Sbjct: 71  KYRVDQFPAASRLINDLMPLLIEALKPNQALRHKLFQVDFLSTLSGEILVSLLYHRQLDE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W     +L+  L+   + + +IGRA K KI  DRDYV E+L V  + L Y+Q+ENSFTQ
Sbjct: 131 EWEIEIKKLKQCLNDEGFNLNIIGRARKMKIVADRDYVIEKLNVFDQPLTYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+Y
Sbjct: 191 PNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAKNFERVLATELAKPSVESAQY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307
           NIA N+++NV+IVRMS+++FT AM  +REF RLK  ++D+ SY   TIFVDPPRSG+D+ 
Sbjct: 251 NIAVNNIDNVQIVRMSAEDFTDAMAGKREFRRLKAQNVDLQSYNCNTIFVDPPRSGMDEG 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  I+YISCNPD+L  +L ILS TH I R ALFDQFPYT HME GVLL RK
Sbjct: 311 TCRMVQGYERIMYISCNPDTLKENLEILSQTHKITRFALFDQFPYTHHMEAGVLLERK 368


>gi|148981485|ref|ZP_01816425.1| tRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145960840|gb|EDK26172.1| tRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 369

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/359 (55%), Positives = 264/359 (73%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEK  RL +M   + VP L+++ S   HYRMRAEF +WH+GDD+Y++MF+Q+TK
Sbjct: 10  RYQEQLAEKTKRLTEMFSEYNVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQETK 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR L 
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLVDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLG 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W + A  L+  L+   + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENSFT
Sbjct: 130 EQWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+RMS+++FT AM  +REF RL+  +ID+ SY   TIFVDPPRSG+D 
Sbjct: 250 YNIAANKIDNVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNP++L  +L ILS TH I R ALFDQFPYT HME GV L RK
Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLEILSETHDITRFALFDQFPYTHHMEAGVFLERK 368


>gi|84394318|ref|ZP_00993041.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01]
 gi|84375048|gb|EAP91972.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01]
          Length = 369

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/358 (55%), Positives = 263/358 (73%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y++QLAEK +RL +M   + VP L+++ S   HYRMRAEF +WH+GDD+Y++MF+Q+TKE
Sbjct: 11  YQEQLAEKTERLTEMFSQYDVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQETKE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +   ++    LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLTDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLGE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W + A  L+  L+   + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENSFTQ
Sbjct: 131 QWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+Y
Sbjct: 191 PNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN ++NV+I+RMS+++FT AM  +REF RL+  +ID+ SY   TIFVDPPRSG+D  
Sbjct: 251 NIAANKIDNVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGMDVD 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  I+YISCNP++L  +L ILS TH I R ALFDQFPYT HME GV L RK
Sbjct: 311 TCKMVQGYERIMYISCNPETLKENLDILSETHDITRFALFDQFPYTHHMEAGVFLERK 368


>gi|86148652|ref|ZP_01066933.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222]
 gi|218710898|ref|YP_002418519.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus LGP32]
 gi|254789082|sp|B7VM88|TRMA_VIBSL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|85833571|gb|EAQ51748.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222]
 gi|218323917|emb|CAV20278.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus LGP32]
          Length = 369

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/358 (55%), Positives = 262/358 (73%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y++QLAEK +RL +M   + VP L+++ S   HYRMRAEF +WH+GDD+Y++MF+Q+TKE
Sbjct: 11  YQEQLAEKTERLTEMFSEYNVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQETKE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +   ++    LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLTDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLGE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W + A  L+  L+   + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENSFTQ
Sbjct: 131 QWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+Y
Sbjct: 191 PNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS+++FT AM  +REF RL+  +ID+ SY   TIFVDPPRSG+D  
Sbjct: 251 NIAANKIENVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGMDVD 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  I+YISCNP++L  +L ILS TH I R ALFDQFPYT HME GV L RK
Sbjct: 311 TCKMVQGYERIMYISCNPETLKENLDILSETHDITRFALFDQFPYTHHMEAGVFLERK 368


>gi|262827630|sp|B4RYR7|TRMA_ALTMD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 369

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 189/357 (52%), Positives = 258/357 (72%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y+ QL EKVDRL  ++  F  P   ++ S+P HYRMRAEF +WH+GDDL+HIMFDQ+TK
Sbjct: 12  RYQAQLDEKVDRLSALLSPFNAPKTSVYPSQPTHYRMRAEFRVWHEGDDLFHIMFDQETK 71

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F P    IN  M +++  IR   +LR KLFQIDYL++ S + +++L+YHR LD
Sbjct: 72  EKYRVDSFPPACKTINDAMEKLLNEIRPNEILRKKLFQIDYLSALSGELVISLLYHRQLD 131

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W   A  L+  L     ++ +IGRA K K  +D D+V ERL V G   +++ IENSFT
Sbjct: 132 DEWEAAAKSLKSTLETHFPKVNIIGRARKQKRIIDNDFVIERLPVKGNEFVFKHIENSFT 191

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N  M+EW L   K + GDLLE+YCG GNFSL LA HFD V+  EIAKPSV+AA+
Sbjct: 192 QPNAEVNCKMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 251

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NI  N ++NVKIVR++++EFTQAM+ +R F+RL+ ID+  Y F T+ VDPPR+GLD+ +
Sbjct: 252 FNIEQNRLHNVKIVRLAAEEFTQAMKGKRTFSRLEGIDLSEYNFTTVLVDPPRAGLDEDS 311

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK
Sbjct: 312 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 368


>gi|269103682|ref|ZP_06156379.1| tRNA (Uracil54-C5-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163580|gb|EEZ42076.1| tRNA (Uracil54-C5-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 368

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/358 (54%), Positives = 261/358 (72%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL EK  R++ +   F  P L+++ S   HYRMRAEF +WH+G+DLY+IMF+QQT+E
Sbjct: 11  YQHQLDEKAQRIQNIFADFDTPELEVYASPAEHYRMRAEFRVWHEGEDLYYIMFNQQTRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+++YHR LD+
Sbjct: 71  KYRVDQFPAASRLINDLMPLLIEAVKPHRSLRHKLFQVDFLSTLSGEILVSMLYHRQLDE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   +++ +IGRA K K  LD+++V E+L V  RTL Y+Q+ENSFTQ
Sbjct: 131 EWETLAKALKQQLNDEGFKLNIIGRARKQKKVLDQEFVIEKLNVFDRTLTYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+Y
Sbjct: 191 PNGTVAQKMLEWAVDCTRDSQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIA N+++NV+I+RMS++EFT+AM   REF RLKD  ID+ SY   TIFVDPPRSG+D+ 
Sbjct: 251 NIAVNNIDNVQIIRMSAEEFTEAMEGRREFRRLKDNNIDLQSYNCNTIFVDPPRSGMDEG 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  I+YISCNP++L  +L ILS TH I R ALFDQFPYT HME GV L RK
Sbjct: 311 TCRMVQGYERIMYISCNPETLKENLDILSETHRITRFALFDQFPYTHHMEAGVFLERK 368


>gi|332142722|ref|YP_004428460.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|332142856|ref|YP_004428594.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552744|gb|AEA99462.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552878|gb|AEA99596.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 365

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 189/357 (52%), Positives = 258/357 (72%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y+ QL EKVDRL  ++  F  P   ++ S+P HYRMRAEF +WH+GDDL+HIMFDQ+TK
Sbjct: 8   RYQAQLDEKVDRLSALLSPFNAPKTSVYPSQPTHYRMRAEFRVWHEGDDLFHIMFDQETK 67

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F P    IN  M +++  IR   +LR KLFQIDYL++ S + +++L+YHR LD
Sbjct: 68  EKYRVDSFPPACKTINDAMEKLLNEIRPNEILRKKLFQIDYLSALSGELVISLLYHRQLD 127

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W   A  L+  L     ++ +IGRA K K  +D D+V ERL V G   +++ IENSFT
Sbjct: 128 DEWEAAAKSLKSTLETHFPKVNIIGRARKQKRIIDNDFVIERLPVKGNEFVFKHIENSFT 187

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N  M+EW L   K + GDLLE+YCG GNFSL LA HFD V+  EIAKPSV+AA+
Sbjct: 188 QPNAEVNCKMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 247

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NI  N ++NVKIVR++++EFTQAM+ +R F+RL+ ID+  Y F T+ VDPPR+GLD+ +
Sbjct: 248 FNIEQNRLHNVKIVRLAAEEFTQAMKGKRTFSRLEGIDLSEYNFTTVLVDPPRAGLDEDS 307

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK
Sbjct: 308 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 364


>gi|223041752|ref|ZP_03611945.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor 202]
 gi|223017436|gb|EEF15854.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor 202]
          Length = 369

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/366 (54%), Positives = 265/366 (72%), Gaps = 5/366 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----LY 59
           L  +QY   LA+KV  L  ++  FQ P L++F S+P H+RMRAEF +WHD ++     LY
Sbjct: 3   LATEQYADLLAKKVANLTALLSPFQAPELEVFASKPQHFRMRAEFRVWHDKNEKGENELY 62

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           HIMFD +TK+R R+D F   + LIN +M  ++A I+   LL  KLFQIDYL++ S +  V
Sbjct: 63  HIMFDPETKQRYRVDQFPIANELINKMMKSLLAEIQGSELLTRKLFQIDYLSTLSGEIAV 122

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +L+YH+ L++ W E A  L+  L  + +++QLIGRA K KI LD DYV+E L + G+  +
Sbjct: 123 SLLYHKALNEEWVEQAQLLKQRLTEQGFRVQLIGRATKQKIALDHDYVEEVLPIHGKNYV 182

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ+ENSFTQPNA IN+ MLEW  + T+  QGDLLELYCGNGNFS+ LA +F +VLA EI
Sbjct: 183 YRQVENSFTQPNAEINIKMLEWARSCTQNSQGDLLELYCGNGNFSIALAENFRKVLATEI 242

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ SY   TIFVDP
Sbjct: 243 SKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYDCNTIFVDP 302

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD  T+ MVQ Y  ILYISCNP++L  +L  LS TH IER ALFDQFP+T H+E G
Sbjct: 303 PRAGLDPDTLNMVQDYERILYISCNPNTLAENLQQLSQTHRIERAALFDQFPFTHHIESG 362

Query: 360 VLLVRK 365
           V L+++
Sbjct: 363 VWLIKR 368


>gi|304412674|ref|ZP_07394278.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS183]
 gi|307307284|ref|ZP_07587021.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica BA175]
 gi|304349018|gb|EFM13432.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS183]
 gi|306910339|gb|EFN40771.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica BA175]
 gi|315265533|gb|ADT92386.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS678]
          Length = 383

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/356 (53%), Positives = 265/356 (74%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+   E
Sbjct: 29  YDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYMFDKVLNE 88

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D ++P S+LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 89  KVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 148

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            WR  A  L+  L + ++ + +IGRA K KI LD+D+V E L V  +T +Y+QIENSFTQ
Sbjct: 149 QWRADATALKAKLSS-QFNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 207

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA ++V MLEW + AT+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y
Sbjct: 208 PNAKVSVKMLEWAIDATQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 267

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+G+D  T+
Sbjct: 268 NIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 327

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  ILYISCNP++L  +L  L+ TH + R ALFDQFPYT HME GVLL R+
Sbjct: 328 ALVQGYERILYISCNPETLKDNLQQLNETHKVTRFALFDQFPYTDHMETGVLLERR 383


>gi|91228523|ref|ZP_01262444.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01]
 gi|91187899|gb|EAS74210.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01]
          Length = 369

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/358 (55%), Positives = 265/358 (74%), Gaps = 2/358 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL  M   + +P L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLTDMFAPYNMPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFT
Sbjct: 130 EEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPR+G+D 
Sbjct: 250 YNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLESYNCNTIFVDPPRAGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFPYT HME GV+L R
Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVMLER 367


>gi|152998729|ref|YP_001364410.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS185]
 gi|171704511|sp|A6WHQ8|TRMA_SHEB8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|151363347|gb|ABS06347.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS185]
          Length = 365

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 191/356 (53%), Positives = 266/356 (74%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+   E
Sbjct: 11  YDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYMFDKVLNE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D ++P S+LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            WR  A  L+  L + ++ + +IGRA K KI LD+D+V E L V  +T +Y+QIENSFTQ
Sbjct: 131 QWRADAAALKTKLSS-QFNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA ++V MLEW + AT+  +GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y
Sbjct: 190 PNAKVSVKMLEWAIDATQDSEGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+G+D  T+
Sbjct: 250 NIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  ILYISCNP++L  +L +L+ TH + R ALFDQFPYT HME GVLL R+
Sbjct: 310 ALVQGYERILYISCNPETLKDNLQLLNETHKVTRFALFDQFPYTEHMETGVLLERR 365


>gi|149911328|ref|ZP_01899948.1| tRNA (uracil-5-)-methyltransferase [Moritella sp. PE36]
 gi|149805568|gb|EDM65571.1| tRNA (uracil-5-)-methyltransferase [Moritella sp. PE36]
          Length = 365

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/360 (54%), Positives = 268/360 (74%), Gaps = 3/360 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           D Y+ QL +K  R R++   F  P L++F S   +YR+RAEF +WHDGDDLY+IMFD++T
Sbjct: 7   DNYQSQLDDKAARQREIFKKFSPPELEVFDSPAENYRLRAEFRVWHDGDDLYYIMFDKET 66

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K++++IDYF+PGS LIN +M  ++  ++   LLR KLFQ+D+L++ S + +V+L+YHR L
Sbjct: 67  KQKIKIDYFLPGSKLINEIMPALLFELKKSNLLRFKLFQVDFLSTLSGELLVSLLYHRQL 126

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
            D W   A  L++ L +  + I +IGRA K K+ LDR++V E L VAG+ L Y+Q+ENSF
Sbjct: 127 SDEWITEAKALKEKL-SEHFNIDIIGRARKQKVVLDREFVVEELNVAGKKLKYKQVENSF 185

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  MLEW L  TK   GDLLELYCGNGNFS+ LA +F++VLA EI+K SV++A
Sbjct: 186 TQPNGIVNQKMLEWSLDVTKNCSGDLLELYCGNGNFSIALAPNFEKVLATEISKSSVQSA 245

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLD 305
           +YNIA N ++N+ I+R+S++EFT A+  EREFNRLK  ++D+ ++   TIFVDPPR+GLD
Sbjct: 246 QYNIAENGLDNLTILRLSAEEFTIAINGEREFNRLKAANVDLTTFNCNTIFVDPPRAGLD 305

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             TV MVQ Y +I+YISC+P++L  +L  LS THTIER ALFDQFPYT H+E GV LV+K
Sbjct: 306 ADTVKMVQGYDNIVYISCSPETLSDNLEALSQTHTIERFALFDQFPYTHHVESGVYLVKK 365


>gi|240948863|ref|ZP_04753219.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor NM305]
 gi|240296678|gb|EER47289.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor NM305]
          Length = 369

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/366 (54%), Positives = 265/366 (72%), Gaps = 5/366 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----LY 59
           L  +QY   LA+KV  L  ++  FQ P L++F S+P H+RMRAEF +WHD ++     LY
Sbjct: 3   LATEQYADLLAKKVANLTALLSPFQAPELEVFASKPQHFRMRAEFRVWHDKNEKGENELY 62

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           HIMFD +TK+R R+D F   + LIN +M  ++A I+   LL  KLFQIDYL++ S +  V
Sbjct: 63  HIMFDPETKQRYRVDQFPIANELINKMMQSLLAEIQGNELLTRKLFQIDYLSTLSGEIAV 122

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +L+YH+ L++ W E A  L+  L  + ++IQLIGRA K KI LD DYV+E L + G+  +
Sbjct: 123 SLLYHKALNEEWVEQAKLLKHRLTEQGFRIQLIGRATKQKIALDYDYVEEVLPIHGKNYV 182

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ+ENSFTQPNA +N+ MLEW  + T+  QGDLLELYCGNGNFS+ LA +F +VLA EI
Sbjct: 183 YRQVENSFTQPNAEMNIKMLEWARSCTQNSQGDLLELYCGNGNFSIALAENFRKVLATEI 242

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ SY   TIFVDP
Sbjct: 243 SKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYDCNTIFVDP 302

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD  T+ MVQ Y  ILYISCNP++L  +L  LS TH IER ALFDQFP+T H+E G
Sbjct: 303 PRAGLDPDTLNMVQGYERILYISCNPNTLAENLQQLSQTHRIERAALFDQFPFTHHIESG 362

Query: 360 VLLVRK 365
           V L+++
Sbjct: 363 VWLIKR 368


>gi|126176363|ref|YP_001052512.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS155]
 gi|160873306|ref|YP_001552622.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS195]
 gi|217975221|ref|YP_002359972.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS223]
 gi|171769982|sp|A3DA80|TRMA_SHEB5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|189036045|sp|A9KW82|TRMA_SHEB9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|254789080|sp|B8EBM5|TRMA_SHEB2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|125999568|gb|ABN63643.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS155]
 gi|160858828|gb|ABX47362.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS195]
 gi|217500356|gb|ACK48549.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS223]
          Length = 365

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 192/356 (53%), Positives = 265/356 (74%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+   E
Sbjct: 11  YDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYMFDKVLNE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D ++P S+LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            WR  A  L+  L + ++ + +IGRA K KI LD+D+V E L V  +T +Y+QIENSFTQ
Sbjct: 131 QWRADATALKAKLSS-QFNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA ++V MLEW + AT+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y
Sbjct: 190 PNAKVSVKMLEWAIDATQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+G+D  T+
Sbjct: 250 NIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  ILYISCNP++L  +L  L+ TH + R ALFDQFPYT HME GVLL R+
Sbjct: 310 ALVQGYERILYISCNPETLKDNLQQLNETHKVTRFALFDQFPYTDHMETGVLLERR 365


>gi|119944400|ref|YP_942080.1| tRNA (uracil-5-)-methyltransferase [Psychromonas ingrahamii 37]
 gi|262827937|sp|A1SSL6|TRMA_PSYIN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|119863004|gb|ABM02481.1| tRNA (uracil-5-)-methyltransferase [Psychromonas ingrahamii 37]
          Length = 365

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/358 (56%), Positives = 259/358 (72%), Gaps = 1/358 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + YE  LA K + L +    F  P L+ F S  +HYRMRAE  +WHDGD+LY+IMFD++T
Sbjct: 9   ENYETLLAAKKEHLNKQFAIFNPPALECFASPKLHYRMRAELRVWHDGDELYYIMFDKKT 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K++ R++ F P S LIN LM  ++  ++   +LR KLFQID+L++   Q IV+L+YH+ L
Sbjct: 69  KQKFRVEQFPPASELINNLMPVLLELVKSSEILRYKLFQIDFLSNLKGQVIVSLLYHKQL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           DD W   A R++  L  +++ I  IGRA K KI LD DYV E L V G  L Y+QIENSF
Sbjct: 129 DDNWLVEAKRIKAEL-LKQFDINFIGRARKQKILLDYDYVIEELQVDGNKLFYQQIENSF 187

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPNA +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F++VLA EIAKPSVE+A
Sbjct: 188 TQPNAKVCEKMLEWAIDCTRDSQGDLLELYCGNGNFSLALAKNFNKVLATEIAKPSVESA 247

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           ++N+A N +NNV ++RMS++EFTQA+  EREF RLK+I +  Y+  TI VDPPRSGLDD 
Sbjct: 248 QFNMAQNGINNVTVIRMSAEEFTQAINGEREFYRLKEITLSDYQCNTILVDPPRSGLDDE 307

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           TV MVQ Y +ILYISCN D+L R+L +LS TH I+R ALFDQFPYT H E GV LV++
Sbjct: 308 TVKMVQHYDNILYISCNADTLSRNLEVLSKTHEIKRFALFDQFPYTYHSEAGVYLVKR 365


>gi|322515262|ref|ZP_08068260.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
 gi|322118767|gb|EFX90973.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
          Length = 368

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/367 (54%), Positives = 263/367 (71%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58
            L I+QY   LA+K + L  +++ F  P L++F+SE  H+RMRAEF +WHD ++     L
Sbjct: 2   NLPIEQYSDLLAKKAENLTALLVPFNPPALEVFQSETSHFRMRAEFRVWHDTNEAGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R+D F   + LIN +M  ++  I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVDQFPIANHLINNMMSTLLTEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L    + +Q+IGRA K KI L+RDYV+E L V G  L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKKRLENHGFNVQIIGRATKQKIALERDYVEEVLPVDGHNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTQNSTGDLLELYCGNGNFSIALAENFRQVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV +A+YNI  N +NN++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVHSAQYNIEQNRINNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  L+ TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLADNLQQLTQTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|163803389|ref|ZP_02197264.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4]
 gi|159172793|gb|EDP57638.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4]
          Length = 369

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/359 (54%), Positives = 266/359 (74%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++QLAEKV+RL  M   ++VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10  RYQEQLAEKVERLNNMFAPYKVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLVDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W E A  L+  L+   + + +IGRA K KI LDRD+V E+L V G++  Y+Q+ENSFT
Sbjct: 130 EQWIENARALKQRLNDEGFNLNIIGRARKMKIVLDRDFVIEKLDVNGQSYTYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+
Sbjct: 190 QPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIAAN ++NV+I+R+S++EFTQA+  +REF RL++  +D+ SY   TIFVDPPR+G+D 
Sbjct: 250 YNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQEAGVDLKSYNCNTIFVDPPRAGMDV 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNP++L  +L +L  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 310 DTCKMVQGYERIMYISCNPETLKENLDMLCETHKVTRFALFDQFPYTHHMEAGVLLERK 368


>gi|126209433|ref|YP_001054658.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           L20]
 gi|166988114|sp|A3N3R7|TRMA_ACTP2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|126098225|gb|ABN75053.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 368

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/367 (54%), Positives = 264/367 (71%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58
            L I+QY   LAEK   L  ++  F  P L++F SE  H+RMRAEF +WHD ++     L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETGHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R  ++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYCVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|120600466|ref|YP_965040.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. W3-18-1]
 gi|262827710|sp|A1RP91|TRMA_SHESW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|120560559|gb|ABM26486.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. W3-18-1]
          Length = 365

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/356 (54%), Positives = 263/356 (73%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+   E
Sbjct: 11  YDAQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYMFDKVLNE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D ++P S+LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            WR  A  L+  L + ++ + +IGRA K KI LD+D+V E L V  +T +Y+QIENSFTQ
Sbjct: 131 QWRTNAAALKAKLSS-QFNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA + V MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVEAA+Y
Sbjct: 190 PNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVEAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI AN + N++I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+G+D  T+
Sbjct: 250 NIEANGIKNLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  ILYISCNPD+L  +L  L  TH + + ALFDQFPYT HME GVLL R+
Sbjct: 310 ALVQGYERILYISCNPDTLKDNLEQLYKTHRVTQFALFDQFPYTDHMETGVLLERR 365


>gi|91791600|ref|YP_561251.1| tRNA (uracil-5-)-methyltransferase [Shewanella denitrificans OS217]
 gi|123061360|sp|Q12SP8|TRMA_SHEDO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|91713602|gb|ABE53528.1| tRNA (uracil-5-)-methyltransferase [Shewanella denitrificans OS217]
          Length = 365

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/356 (54%), Positives = 266/356 (74%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLAEK  +L +    F  P L++F SEP HYRMRAEF +WH+GDDLY+ MFD+    
Sbjct: 11  YDAQLAEKKRKLSEGFAEFAPPELEVFASEPAHYRMRAEFRVWHEGDDLYYYMFDKVLDA 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R + ++P S LINA+M  ++  +R    LR +LFQ+D+L++ S + +V+L+YHR LD+
Sbjct: 71  KVRCEQYLPASTLINAIMTSLVEELRPNHSLRHRLFQVDFLSTLSGEILVSLLYHRQLDE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W+  A  L+  L + ++ + +IGRA K KI LD+D+V E + V G+ L Y+QIENSFTQ
Sbjct: 131 QWQVEAAALKQRLSS-QFNVNIIGRARKQKIDLDKDFVVETIKVNGQDLHYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +++ MLEW + ATK  QGDLLELYCGNGNF++ LA++F+RVLA E+AKPSV AA+Y
Sbjct: 190 PNAKVSIKMLEWAIDATKQSQGDLLELYCGNGNFTIALAQNFNRVLATELAKPSVGAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NIA N+V+NV+I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+G+DD T+
Sbjct: 250 NIAINNVDNVQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGIDDETL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            ++Q Y  ILYISCNP++L  +L  LS++H I R ALFDQFPYT HME GVLL RK
Sbjct: 310 KLIQGYERILYISCNPETLKDNLQTLSSSHKITRFALFDQFPYTHHMESGVLLERK 365


>gi|170729029|ref|YP_001763055.1| tRNA (uracil-5-)-methyltransferase [Shewanella woodyi ATCC 51908]
 gi|226705993|sp|B1KN03|TRMA_SHEWM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|169814376|gb|ACA88960.1| tRNA (uracil-5-)-methyltransferase [Shewanella woodyi ATCC 51908]
          Length = 365

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/358 (54%), Positives = 258/358 (72%), Gaps = 1/358 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + Y+ QL EK  +L  +   F  PNL++F SE  HYRMRAEF IWHDG+D+Y+ MFD+  
Sbjct: 9   NTYDAQLEEKRIKLENIFTDFDTPNLEVFSSEQAHYRMRAEFRIWHDGEDMYYYMFDKAL 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
             ++R D F+P S LIN +M  ++A ++  PLLR +LFQID+L++ S + +V+L+YH+ L
Sbjct: 69  NSKVRCDQFLPASKLINEMMPALIAELKPNPLLRHRLFQIDFLSTLSGEILVSLLYHKQL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D+ W   A  L++ L A K+ + +IGRA K K+  D+D+V E L V G  L Y QIENSF
Sbjct: 129 DEQWETEAKSLKERL-ASKFNVNIIGRARKQKLIFDKDFVVESLQVNGEQLQYHQIENSF 187

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++FDRVLA E+AKPSVE+A
Sbjct: 188 TQPNGKVSVKMLEWAIDVTKNSSGDLLELYCGNGNFSIALAQNFDRVLATELAKPSVESA 247

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +YNI  N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY   TIFVDPPR+G+D  
Sbjct: 248 QYNIKINKIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGMDPD 307

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           TV +VQ Y  I+YISCNP++L  +L  LS TH I R ALFDQFPYT HME GV L RK
Sbjct: 308 TVKLVQGYERIVYISCNPNTLIDNLVELSKTHKITRFALFDQFPYTDHMESGVFLERK 365


>gi|146294594|ref|YP_001185018.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens CN-32]
 gi|172046872|sp|A4YB86|TRMA_SHEPC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|145566284|gb|ABP77219.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens CN-32]
          Length = 366

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/355 (54%), Positives = 262/355 (73%), Gaps = 1/355 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+   E
Sbjct: 11  YDAQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYMFDKVLNE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D ++P S+LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            WR  A  L+  L + ++ + +IGRA K KI LD+D+V E L V  +T +Y+QIENSFTQ
Sbjct: 131 QWRTNAAALKAKLSS-QFNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA + V MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVEAA+Y
Sbjct: 190 PNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVEAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI AN + N++I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+G+D  T+
Sbjct: 250 NIEANGIKNLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +VQ Y  ILYISCNPD+L  +L  L  TH + + ALFDQFPYT HME GVLL R
Sbjct: 310 ALVQGYERILYISCNPDTLKDNLEQLYKTHRVTQFALFDQFPYTDHMETGVLLER 364


>gi|332991663|gb|AEF01718.1| tRNA (uracil-5-)-methyltransferase [Alteromonas sp. SN2]
          Length = 364

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/362 (52%), Positives = 258/362 (71%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T     Y+ QL EKVDRL  ++  F  P+L ++ S+P +YRMRAEF +WHDGDDLYHIMF
Sbjct: 3   TTTAKDYQAQLDEKVDRLGTLLTPFNAPSLSVYPSKPENYRMRAEFRVWHDGDDLYHIMF 62

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQ +KE+ R+D F P S  IN+ M +++  ++   LLR KLFQIDYLT  S + +++L+Y
Sbjct: 63  DQGSKEKYRVDTFPPASETINSAMQQLIEYLKPNELLRKKLFQIDYLTGLSGELVISLLY 122

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LDD W   A  LR  L  +   + +IGRA K K  +  D++ ERL + GR   ++ I
Sbjct: 123 HKPLDDEWEVQAELLRTFLATQFTAVSIIGRARKQKRIVGNDFIIERLPINGREFEFKHI 182

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N  M+EW L  +  + GDLLE+YCG GNFS+ LA HFD V+  EIAKPS
Sbjct: 183 ENSFTQPNAEVNCSMIEWSLECSAPLTGDLLEMYCGAGNFSMPLAVHFDNVIGTEIAKPS 242

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+AA+YNIAANH++NVKIVR+S++EFT+AM  ER F+RL+ I++  Y F T+ VDPPR+G
Sbjct: 243 VQAAQYNIAANHLDNVKIVRLSAEEFTEAMNGERTFSRLEGINLTEYNFTTVLVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD  ++ M+Q Y +I+YISCNP++L  +LS+L  TH +   ALFDQFP+T H+E GVLL 
Sbjct: 303 LDVDSLKMIQGYDNIIYISCNPETLAENLSLLCETHEVANAALFDQFPFTHHIEAGVLLT 362

Query: 364 RK 365
           +K
Sbjct: 363 KK 364


>gi|213612916|ref|ZP_03370742.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 451

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/304 (65%), Positives = 239/304 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 8   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 67

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 68  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 127

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 128 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 187

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 188 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 247

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 248 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 307

Query: 305 DDAT 308
           D  T
Sbjct: 308 DSET 311


>gi|157377468|ref|YP_001476068.1| tRNA (uracil-5-)-methyltransferase [Shewanella sediminis HAW-EB3]
 gi|189036048|sp|A8G1G7|TRMA_SHESH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157319842|gb|ABV38940.1| tRNA (uracil-5-)-methyltransferase [Shewanella sediminis HAW-EB3]
          Length = 365

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/358 (54%), Positives = 258/358 (72%), Gaps = 1/358 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + Y+ QL EK  +L Q+   F  P L++F SEP HYRMRAEF IWHDG+D+Y+ MFD+  
Sbjct: 9   NTYDAQLEEKRIKLEQIFTDFDTPKLEVFSSEPAHYRMRAEFRIWHDGEDMYYYMFDKAL 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
             ++R D F+P S LIN +M  +M  +R  P LR +LFQID+L++ S + +V+L+YH+ L
Sbjct: 69  DSKVRCDQFLPASELINKVMPALMEELRPNPTLRHRLFQIDFLSTLSGEILVSLLYHKQL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W   A  L++ L A  + I +IGRA K K+ +D+D+V E LTV    L Y QIENSF
Sbjct: 129 DAQWEIEAKALKEKLAA-TFNINIIGRARKQKLIIDKDFVIESLTVNNEQLQYHQIENSF 187

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  ++V MLEW +  TK  QGDLLELYCGNGNFS+ LA++FDRVLA E+AKPSVE+A
Sbjct: 188 TQPNGKVSVKMLEWAIDVTKNSQGDLLELYCGNGNFSIALAQNFDRVLATELAKPSVESA 247

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +YNI  N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY   TIFVDPPR+G+D  
Sbjct: 248 QYNIKINKIDNLQIIRMSAEDFTDAMAKKRTFRRLEGIDLDSYNCNTIFVDPPRAGMDPD 307

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           TV +VQ Y  I+YISCNP++L  +L+ LS TH I R ALFDQFPYT HME GV L R+
Sbjct: 308 TVKLVQGYDRIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFLERR 365


>gi|24371805|ref|NP_715847.1| tRNA (uracil-5-)-methyltransferase [Shewanella oneidensis MR-1]
 gi|50401568|sp|Q8CX51|TRMA_SHEON RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|24345607|gb|AAN53292.1|AE015470_5 tRNA (uracil-5-)-methyltransferase [Shewanella oneidensis MR-1]
          Length = 366

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/355 (53%), Positives = 262/355 (73%), Gaps = 1/355 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q    F+ P++++F S+P HYRMRAEF +WH+GDDLY+ MFD+   +
Sbjct: 11  YDAQLEAKRIKLEQAFAQFETPSIEVFASDPEHYRMRAEFRVWHEGDDLYYYMFDKALND 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D ++P S LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KVRCDQYLPASTLINEMMAALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            WR  AI L+  L + ++++ +IGRA K KI LD+D+V E L V  +   Y+QIENSFTQ
Sbjct: 131 QWRAEAIALKAKLSS-QFKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA + + MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y
Sbjct: 190 PNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N ++N++I+RMS++EF+ AM ++R F RL+ ID+ SY   TIFVDPPR+G+D AT+
Sbjct: 250 NIEINGIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYLCNTIFVDPPRAGIDPATL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +VQ Y  ILYISCNPD+L  +L  L  TH + R ALFDQFPYT HME GVLL R
Sbjct: 310 DLVQGYERILYISCNPDTLKDNLQQLYKTHKVTRFALFDQFPYTDHMETGVLLER 364


>gi|119472791|ref|ZP_01614728.1| tRNA (uracil-5-)-methyltransferase [Alteromonadales bacterium TW-7]
 gi|119444750|gb|EAW26055.1| tRNA (uracil-5-)-methyltransferase [Alteromonadales bacterium TW-7]
          Length = 365

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/358 (55%), Positives = 262/358 (73%), Gaps = 3/358 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QY+ QL+EK  R+      F V  L++F SEPI+YR RAEF +WHDGDDL+HIMFDQQTK
Sbjct: 10  QYQAQLSEKEQRITSQFQRFGVEQLEVFSSEPINYRQRAEFRVWHDGDDLFHIMFDQQTK 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E++R+D F P + L+  +M  M+  ++   +LR KLFQIDYL++ S + +V+L+YH+ LD
Sbjct: 70  EKIRVDTFDPAAPLVGEIMQVMIENLKPCEVLRRKLFQIDYLSTLSGEILVSLLYHKPLD 129

Query: 129 DAW-RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D W RE  I+   A  + KY+I  IGRA K K  L  D+V E+LTV G+ LIY+Q+ENSF
Sbjct: 130 DEWLRE--IKSLKAKLSEKYKIDFIGRARKQKEVLGDDFVTEQLTVNGQELIYQQVENSF 187

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPNA +N+ MLEW     K ++ DLLELYCGNGNFS+ LA  F++VLA EI+K SV +A
Sbjct: 188 TQPNAKVNISMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGSFNKVLATEISKSSVHSA 247

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +YNIA N+V+N+ I+RMSS+EFTQAM  ER F+RL  ID+ SY  +TI VDPPR+G+D+ 
Sbjct: 248 QYNIAKNNVDNLDIIRMSSEEFTQAMNGERTFSRLDGIDLKSYDCQTILVDPPRAGMDEL 307

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  +V  Y +I+YISCNPD+L RDL  L+ +H ++R A+FDQFPYT H+E GV L RK
Sbjct: 308 TCDLVANYENIIYISCNPDTLERDLDHLTRSHNVKRFAIFDQFPYTHHIESGVFLQRK 365


>gi|157959994|ref|YP_001500028.1| tRNA (uracil-5-)-methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|189036047|sp|A8GYV6|TRMA_SHEPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157844994|gb|ABV85493.1| tRNA (uracil-5-)-methyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 365

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/356 (53%), Positives = 258/356 (72%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L+Q+   F  P L+ F SEP HYRMRAEF +WH+G+DLY+ MFD++   
Sbjct: 11  YDVQLEAKCVKLKQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYMFDKELNS 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+YH+ LD 
Sbjct: 71  KVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDS 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W + A  L+  L + ++ + LIGRA K KI  D+D+V E L VAG+ L Y QIENSFTQ
Sbjct: 131 EWEQQAKILKQTL-STQFNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVE+A+Y
Sbjct: 190 PNGKVSVKMLEWAIDITKNSSGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N V N++I+RMS+++FT+AM ++R F RL+ ID+ SY   TIFVDPPR+GLD  TV
Sbjct: 250 NIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGLDADTV 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  I+YISCNP++L  +L+ LS TH I R ALFDQFPYT HME GV L +K
Sbjct: 310 KLVQGYERIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFLEKK 365


>gi|332304646|ref|YP_004432497.1| tRNA (uracil-5-)-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171975|gb|AEE21229.1| tRNA (uracil-5-)-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 365

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/356 (53%), Positives = 265/356 (74%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y++QLA+KVD + Q   AF +PN+++F S  ++YRMRAEF IWHDGD+L H+MFDQ TK+
Sbjct: 11  YDKQLAQKVDSVEQSFAAFSMPNVEVFTSAALNYRMRAEFRIWHDGDNLDHVMFDQATKQ 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           +  ++ F P S++IN +M++++  ++   +LR KLFQIDYL++ +D+ +VTL+YH+ L++
Sbjct: 71  KYSVNQFPPASVVINKVMVKLVPLLKDNEVLRRKLFQIDYLSTLTDEVLVTLVYHKPLEE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  LR  L   +++I LIGRA K K+ LD+DYV E L V  R   ++QIENSFTQ
Sbjct: 131 EWLIEATALRTVLR-EEFKIDLIGRAKKQKVLLDKDYVLEALPVNERIYTFKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNAG+N  MLEW L  T+  +GDLLELYCG GNFSL LA++F +VLA EI+K SV AA++
Sbjct: 190 PNAGVNSKMLEWALDVTQDCEGDLLELYCGAGNFSLPLAQNFKQVLATEISKSSVAAAQH 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N+++NV I+RMSS+EF QA+  ER F RL+ +++  Y  +T+ VDPPRSGLDD T+
Sbjct: 250 NIRLNNIDNVTILRMSSEEFVQALNNERSFRRLEGVNLQKYNCQTVLVDPPRSGLDDETL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            MVQ Y +I+YISCNP++L  +L++LS TH + R ALFDQFP+T H+E GV L ++
Sbjct: 310 AMVQGYANIVYISCNPETLKDNLAVLSETHDVVRFALFDQFPFTHHVESGVFLQKR 365


>gi|149192330|ref|ZP_01870537.1| tRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1]
 gi|148833841|gb|EDL50871.1| tRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1]
          Length = 369

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/358 (54%), Positives = 264/358 (73%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL EK  RL  MM  +  P L++F S   HYRMRAEF +WH+G+D+Y+IMF+Q+T+E
Sbjct: 11  YQIQLEEKSQRLIDMMAPYSAPELEVFTSPEKHYRMRAEFRVWHEGEDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++   +LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGNDVLRKKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           AW+  A  L+  L+   +++ LIGRA K KI LD+DYV E L V G+   Y+Q+ENSFTQ
Sbjct: 131 AWKAEAKALKQRLNDEGFKLNLIGRARKMKIVLDQDYVLETLHVNGQPYHYQQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSV++A++
Sbjct: 191 PNGPVAQKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVDSAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDA 307
           NIA N ++NV+I+RMS++EFT+AM  +REF RL  +++D+ SY   TIFVDPPR+G+D  
Sbjct: 251 NIAENKIDNVQIIRMSAEEFTEAMEGKREFRRLQQQNVDLKSYNCNTIFVDPPRAGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  ILYISCNP++L  +L +LS THTI R ALFDQFP+T H+E GVLL RK
Sbjct: 311 TCKMVQGYQRILYISCNPETLKDNLDVLSETHTITRFALFDQFPFTHHIEAGVLLERK 368


>gi|114045686|ref|YP_736236.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-7]
 gi|122945065|sp|Q0I0C6|TRMA_SHESR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|113887128|gb|ABI41179.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-7]
          Length = 365

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/356 (53%), Positives = 263/356 (73%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q    F+ P++++F SEP HYRMRAEF +WH+GDDLY+ MFD+   +
Sbjct: 11  YDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRVWHEGDDLYYYMFDKVLND 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D ++P S LIN +M  ++A ++    LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KVRCDQYLPASALINQMMAALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            WR  A  L+  L + ++++ +IGRA K KI LD+D+V E L V  +   Y+QIENSFTQ
Sbjct: 131 QWRSEAAALKARLSS-QFKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA + + MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y
Sbjct: 190 PNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY   TIFVDPPR+G+D AT+
Sbjct: 250 NIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPATL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  ILYISCNPD+L  +L  L+ TH + R ALFDQFPYT HME GVLL R+
Sbjct: 310 ELVQGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLLERR 365


>gi|113968523|ref|YP_732316.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-4]
 gi|123325499|sp|Q0HNV8|TRMA_SHESM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|113883207|gb|ABI37259.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-4]
          Length = 365

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/356 (53%), Positives = 263/356 (73%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q    F+ P++++F SEP HYRMRAEF IWH+GDDLY+ MFD+   +
Sbjct: 11  YDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRIWHEGDDLYYYMFDKVLND 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D ++P S LIN +M  ++A ++    LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KVRCDQYLPASALINQMMAALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            WR  A  L+  L + ++++ +IGRA K KI LD+D+V E L V  +   Y+QIENSFTQ
Sbjct: 131 QWRSEAAALKARLSS-QFKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA + + MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y
Sbjct: 190 PNAKVAIKMLEWAIDVTQHSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY   TIFVDPPR+G+D AT+
Sbjct: 250 NIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPATL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  ILYISCNPD+L  +L  L+ TH + R ALFDQFPYT HME GVLL R+
Sbjct: 310 ELVQGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLLERR 365


>gi|167626059|ref|YP_001676353.1| tRNA (uracil-5-)-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|189036046|sp|B0TMV6|TRMA_SHEHH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|167356081|gb|ABZ78694.1| tRNA (uracil-5-)-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 365

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/356 (53%), Positives = 256/356 (71%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q+   F  P L+ F SEP HYRMRAEF +WH+G+DLY+ MFD++   
Sbjct: 11  YDVQLETKRVKLTQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYMFDKELNS 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+YH+ LD 
Sbjct: 71  KVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDS 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W + A  L+  L + ++ + LIGRA K KI  D+D+V E L VAG+ L Y QIENSFTQ
Sbjct: 131 EWEQQAKILKQTL-STQFNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++FDRVLA E+AKPSVE+A+Y
Sbjct: 190 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKPSVESAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N V N++I+RMS+++FT+AM ++R F RL+ ID+ SY   TIFVDPPR+GLD  TV
Sbjct: 250 NIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGLDADTV 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  I+YISCNP +L  +L+ LS TH I R ALFDQFPYT HME GV L ++
Sbjct: 310 KLVQGYERIVYISCNPHTLLDNLAELSKTHKITRFALFDQFPYTDHMESGVFLEKR 365


>gi|332535185|ref|ZP_08410992.1| tRNA (uracil54-C5-)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035404|gb|EGI71904.1| tRNA (uracil54-C5-)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 365

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/357 (54%), Positives = 258/357 (72%), Gaps = 1/357 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QY+ QL+EK  R+      F V  L++F SEP +YR RAEF +WHDGDDL+HIMFDQQTK
Sbjct: 10  QYQAQLSEKEQRISTQFQRFGVEQLEVFSSEPTNYRQRAEFRVWHDGDDLFHIMFDQQTK 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E++R+D F P + L+  +M  M+  ++   +LR KLFQIDYL++ S + +V+L+YH+ LD
Sbjct: 70  EKIRVDTFDPAAPLVGEIMQVMIENLKPCEILRRKLFQIDYLSTLSGEILVSLLYHKPLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W      L++ L + KY+I  IGRA K K  L  D+V ERLT+ G+ LIY+Q+ENSFT
Sbjct: 130 DEWLSEIKALKEKLSS-KYKIDFIGRARKQKEVLGDDFVTERLTINGQELIYQQVENSFT 188

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N++MLEW     K ++ DLLELYCGNGNFS+ LA  F++VLA EI+K SV +A+
Sbjct: 189 QPNAKVNINMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGCFNKVLATEISKSSVHSAQ 248

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           YNIA N+V N+ I+RMSS+EFTQAM  ER F+RL  ID+ SY  +TI VDPPR+G+D  T
Sbjct: 249 YNIAKNNVENLDIIRMSSEEFTQAMNGERTFSRLDGIDLKSYDCQTILVDPPRAGMDALT 308

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +V  Y  I+YISCNP++L RDL  L+ TH ++R A+FDQFPYT H+E GV L RK
Sbjct: 309 CDLVANYESIIYISCNPETLERDLDHLTRTHNVKRFAIFDQFPYTHHIESGVFLQRK 365


>gi|33151895|ref|NP_873248.1| tRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi 35000HP]
 gi|50401509|sp|Q7U339|TRMA_HAEDU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|33148116|gb|AAP95637.1| tRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 369

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/368 (54%), Positives = 262/368 (71%), Gaps = 6/368 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD-----DL 58
           +L I+QY + LA+KVD L  ++  F  P   IF SE  H+RMRAEF +WH  +     DL
Sbjct: 2   SLPIEQYPELLAQKVDNLTALLAPFNPPPFDIFASETSHFRMRAEFRVWHQKNEQGENDL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFD  TK+R R+D     + LIN +M +++  I+  P+L  KLFQ+DYLT+ S +  
Sbjct: 62  YHIMFDPTTKQRYRVDQLPIANQLINTMMQKLLTQIQGIPVLTHKLFQVDYLTTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           ++L+YH+ L D W   A  L+  L      + +IGRA+K KI +D DYV E+L VAG+TL
Sbjct: 122 ISLLYHKKLTDEWLAQAKLLKQRLSEPGLTVHIIGRASKQKIAIDCDYVKEKLNVAGKTL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAV 237
           IYRQ+ENSFTQPNA +N++MLEW    T   Q  DLLELYCGNGNFS+ LA +F +VLA 
Sbjct: 182 IYRQVENSFTQPNAKMNINMLEWAQKCTANSQDSDLLELYCGNGNFSIALAGNFRKVLAT 241

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI K SV +A+YNIA N ++N++I+RMS++EFTQA+   R+FNRL+ ID+ +Y+  TIFV
Sbjct: 242 EICKSSVHSAQYNIAQNGIDNLQIIRMSAEEFTQAINGVRQFNRLQGIDLSAYQCNTIFV 301

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPR+GLD AT+ MVQ YP ILYISCNP +L  +L  L+TTH IER+ALFDQFPYT H+E
Sbjct: 302 DPPRAGLDQATLNMVQNYPRILYISCNPATLADNLRQLTTTHRIERVALFDQFPYTHHIE 361

Query: 358 CGVLLVRK 365
            GV L+RK
Sbjct: 362 SGVWLIRK 369


>gi|109900328|ref|YP_663583.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas atlantica
           T6c]
 gi|123064065|sp|Q15NK9|TRMA_PSEA6 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|109702609|gb|ABG42529.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 365

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/356 (53%), Positives = 265/356 (74%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YEQQLA+KV+ ++Q    F +P L+ F S P++YRMRAEF +WHDGD+L H+MFDQ TK+
Sbjct: 11  YEQQLAQKVNSVQQAFKTFSMPALEAFSSAPLNYRMRAEFRMWHDGDNLDHVMFDQSTKQ 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           +  ++ F P S++IN +M+++++ ++   +LR KLFQIDYL++ +++ +VTL+YH+ L+D
Sbjct: 71  KYAVNQFPPASIVINEVMMKLLSLVKKNEVLRRKLFQIDYLSTLTNEILVTLVYHKPLED 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W + A  LR AL   +++I +IGRA K K+ LD+DYV E L V  R   ++QIENSFTQ
Sbjct: 131 EWLKEAKALR-ALLRDEFKIDIIGRAKKQKVLLDKDYVIETLPVNDRLYTFKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNAG+N  MLEW L  T+  QGDLLELYCG GNFSL LA++F +VLA EI+K SV AA+ 
Sbjct: 190 PNAGVNSKMLEWALDVTQDCQGDLLELYCGAGNFSLPLAQNFRQVLATEISKSSVAAAQD 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N++ NV I+RMSS+EF QA+  ER F RL+ I++  Y  +T+ VDPPRSGLDD T+
Sbjct: 250 NIRLNNIENVTILRMSSEEFVQALNNERSFRRLEGINLQDYDCQTVLVDPPRSGLDDDTL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            M++ Y +I+YISCNP++L  +L++LS TH + R ALFDQFPYT H+E GV L ++
Sbjct: 310 DMIKEYQNIVYISCNPETLNNNLAVLSETHNVVRFALFDQFPYTHHVESGVYLQKR 365


>gi|77359221|ref|YP_338796.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas haloplanktis
           TAC125]
 gi|123589634|sp|Q3ILM2|TRMA_PSEHT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|76874132|emb|CAI85353.1| tRNA (Uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) (RUMT)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 367

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/357 (54%), Positives = 259/357 (72%), Gaps = 1/357 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QY+ QL+EK  R+      F V  L++F SEPI+YR RAEF +WHDGDDL+HIMFDQQTK
Sbjct: 10  QYDAQLSEKEQRIAAQFQRFGVDKLEVFSSEPINYRQRAEFRVWHDGDDLFHIMFDQQTK 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           +++R+D F P + L+  +M  M+  ++   +LR KLFQIDYL++ S + +V+L+YH+ LD
Sbjct: 70  DKIRVDSFDPAAPLVGEVMQVMIDNLKSCEILRRKLFQIDYLSTLSGEILVSLLYHKPLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W      L++ L + KY+I  IGRA K K  L  DYV ERL V G+ LIY+Q+ENSFT
Sbjct: 130 EHWLSEINTLKEKL-SSKYKIDFIGRARKQKEMLGDDYVTERLNVNGQELIYQQVENSFT 188

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N+ MLEW     K ++ DLLELYCGNGNFS+ LA  F++VLA EI+K SV +A+
Sbjct: 189 QPNAKVNIKMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGSFNKVLATEISKSSVHSAQ 248

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           YNIA N V+N+ I+RMSS+EFTQAM  ER F+RL+ ID++SY  +TI VDPPR+G+D  T
Sbjct: 249 YNIAQNKVDNLDIIRMSSEEFTQAMNGERSFSRLEGIDLNSYNCQTILVDPPRAGMDTLT 308

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +V  Y  I+YISCNP++L RDL  L+ TH ++R A+FDQFPYT H+E GV L +K
Sbjct: 309 CDLVANYESIIYISCNPETLERDLDHLTRTHEVKRFAIFDQFPYTHHIESGVFLQKK 365


>gi|117918637|ref|YP_867829.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. ANA-3]
 gi|134035337|sp|A0KRK4|TRMA_SHESA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|117610969|gb|ABK46423.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. ANA-3]
          Length = 365

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/356 (52%), Positives = 262/356 (73%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q    F+ P++++F SEP HYRMRAEF +WH+GDDLY+ MFD+   +
Sbjct: 11  YDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRVWHEGDDLYYYMFDKVLND 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D ++P S LIN +M  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KVRCDQYLPASALINQMMAALITELKPNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            WR  A  L+  L + ++++ +IGRA K KI LD+D+V E L V  +   Y+QIENSFTQ
Sbjct: 131 QWRSEAAALKARLSS-QFKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA + + MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSV+AA+Y
Sbjct: 190 PNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVDAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY   TIFVDPPR+G+D AT+
Sbjct: 250 NIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPATL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +V+ Y  ILYISCNPD+L  +L  L+ TH + R ALFDQFPYT HME GVLL R+
Sbjct: 310 ELVRGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLLERR 365


>gi|294142953|ref|YP_003558931.1| tRNA (uracil-5-)-methyltransferase [Shewanella violacea DSS12]
 gi|293329422|dbj|BAJ04153.1| tRNA (uracil-5-)-methyltransferase [Shewanella violacea DSS12]
          Length = 365

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 190/356 (53%), Positives = 256/356 (71%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL EK  +L Q+   F  P L+ F SE  +YRMR EF IWHDGDD+Y+ MFD+    
Sbjct: 11  YDAQLEEKRIKLEQIFTDFDTPRLETFGSETANYRMRCEFRIWHDGDDMYYYMFDKALDS 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+YH+ LD 
Sbjct: 71  KVRCDQFLPASSLINEMMPALIEELKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDQ 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+D L A K+++ LIGRA K K+  D+D+V E L+V G  L Y QIENSFTQ
Sbjct: 131 EWEAEAKSLKDRL-ASKFKVNLIGRARKQKLIFDKDFVVETLSVNGEQLHYHQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++FDRVLA E+AKPSV++A+Y
Sbjct: 190 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKPSVQSAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N+++N++I+RMS+++FT AM ++R F RL+ ID+ SY   TIFVDPPR+GLD  TV
Sbjct: 250 NIEINNIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGLDSNTV 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  I+YISCNP++L  +L+ L+ TH I R ALFDQFPYT HME GV L +K
Sbjct: 310 KLVQGYERIVYISCNPNTLIENLTELTKTHKITRFALFDQFPYTDHMESGVFLEKK 365


>gi|219872016|ref|YP_002476391.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis SH0165]
 gi|254789078|sp|B8F7Z1|TRMA_HAEPS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|219692220|gb|ACL33443.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis SH0165]
          Length = 369

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/361 (55%), Positives = 251/361 (69%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL I QY   LA+K + L  ++  F  P L +F S+  H+R+RAEF +WHD  DLYHIMF
Sbjct: 2   TLPIHQYPALLAKKAENLTALLAPFNAPELDVFASDTSHFRLRAEFRVWHDNGDLYHIMF 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQ TK+R R+D F   S LIN +M  ++A I+   LL  KLFQIDYL++ S Q  V+++Y
Sbjct: 62  DQATKQRYRVDQFPIASQLINRMMTVLLAEIKGNELLTRKLFQIDYLSTLSGQIAVSMLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L + W E A  L+  L    + +QLIGRA K KI LD DYV+E L V G+   YRQ+
Sbjct: 122 HKSLTEEWIEQAKLLKQRLIGYGFDVQLIGRATKQKIALDCDYVEEALNVDGQIYRYRQV 181

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPN  +N+ MLEW  A T   +GDLLELYCGNGNFS+ LA  F +VLA EI+K S
Sbjct: 182 ENSFTQPNGKMNIKMLEWARACTANSKGDLLELYCGNGNFSIALANQFRKVLATEISKSS 241

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE+A+YNIA N V+N++I+RMS++EFT+AM   R F RL+ ID+  Y   TIFVDPPR G
Sbjct: 242 VESAQYNIAVNGVDNLQIIRMSAEEFTEAMNGVRVFYRLRGIDLKQYDCNTIFVDPPRVG 301

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ MVQ Y  ILYISCNP +L  +L  L+ TH IER ALFDQFPYT H+E GV L+
Sbjct: 302 LDQATLEMVQGYEKILYISCNPHTLADNLKQLTQTHRIERCALFDQFPYTEHIESGVWLI 361

Query: 364 R 364
           R
Sbjct: 362 R 362


>gi|262831394|sp|B8CH56|TRMA_SHEPW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 365

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/356 (53%), Positives = 257/356 (72%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L+Q+   F  P L+ F SE  HYRMRAEF +WH+G+DLY+ MFD++   
Sbjct: 11  YDVQLEAKRVKLKQLFTDFDTPELESFSSETAHYRMRAEFRMWHEGEDLYYYMFDKELNS 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+YH+ LD 
Sbjct: 71  KVRCDQFLPASELINKMMPVLVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDA 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W E A  L+  L + ++ + LIGRA K K+  D+D+V E L VAG+ L Y QIENSFTQ
Sbjct: 131 EWEEQAKILKQTL-SSQFNVNLIGRARKQKLIFDKDFVVESLNVAGKQLQYHQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVE+A+Y
Sbjct: 190 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  NHV+N++I+RMS+++FT AM ++R + RL+ ID+ SY   TIFVDPPR+GLD+ TV
Sbjct: 250 NIKMNHVDNLQIIRMSAEDFTDAMAKKRSYRRLEGIDLDSYNCNTIFVDPPRAGLDENTV 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  I+YISCNP++L  +L  LS TH I R  LFDQFPYT HME GV L +K
Sbjct: 310 KLVQGYERIVYISCNPNTLLDNLKELSKTHNITRFVLFDQFPYTDHMESGVFLEKK 365


>gi|212633111|ref|YP_002309636.1| tRNA (uracil-5-)-methyltransferase [Shewanella piezotolerans WP3]
 gi|212554595|gb|ACJ27049.1| tRNA (uracil-5-)-methyltransferase [Shewanella piezotolerans WP3]
          Length = 360

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/356 (53%), Positives = 257/356 (72%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L+Q+   F  P L+ F SE  HYRMRAEF +WH+G+DLY+ MFD++   
Sbjct: 6   YDVQLEAKRVKLKQLFTDFDTPELESFSSETAHYRMRAEFRMWHEGEDLYYYMFDKELNS 65

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+YH+ LD 
Sbjct: 66  KVRCDQFLPASELINKMMPVLVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDA 125

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W E A  L+  L + ++ + LIGRA K K+  D+D+V E L VAG+ L Y QIENSFTQ
Sbjct: 126 EWEEQAKILKQTL-SSQFNVNLIGRARKQKLIFDKDFVVESLNVAGKQLQYHQIENSFTQ 184

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVE+A+Y
Sbjct: 185 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 244

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  NHV+N++I+RMS+++FT AM ++R + RL+ ID+ SY   TIFVDPPR+GLD+ TV
Sbjct: 245 NIKMNHVDNLQIIRMSAEDFTDAMAKKRSYRRLEGIDLDSYNCNTIFVDPPRAGLDENTV 304

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  I+YISCNP++L  +L  LS TH I R  LFDQFPYT HME GV L +K
Sbjct: 305 KLVQGYERIVYISCNPNTLLDNLKELSKTHNITRFVLFDQFPYTDHMESGVFLEKK 360


>gi|319424830|gb|ADV52904.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens 200]
          Length = 365

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/356 (53%), Positives = 261/356 (73%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ MFD+   E
Sbjct: 11  YDAQLEAKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRVWHDGDDLYYYMFDKVLNE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R + ++P S+LIN +M  ++A ++    LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KVRCNQYLPASVLINQMMSALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L   ++++ +IGRA K KI LD+D+V E L V  +T +Y+QIENSFTQ
Sbjct: 131 QWLAEANMLKTKL-GHQFKVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA + V MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVEAA+Y
Sbjct: 190 PNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKPSVEAAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI AN + N++I+RMS+++F+ A+ ++R F RL+ ID+ SY   TIFVDPPR+G+D  T+
Sbjct: 250 NIEANGIKNLQIIRMSAEDFSDAIAKKRSFRRLEGIDLDSYVCNTIFVDPPRAGIDPDTL 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  ILYISCNPD+L  +L  L  TH + R ALFDQFPYT HME GVLL R+
Sbjct: 310 ALVQGYERILYISCNPDTLKDNLEQLYKTHRVTRFALFDQFPYTDHMETGVLLERR 365


>gi|167856458|ref|ZP_02479177.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis 29755]
 gi|167852418|gb|EDS23713.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis 29755]
          Length = 364

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/362 (55%), Positives = 251/362 (69%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL I QY   LA+K + L  ++  F  P L +F S+  H+R+RAEF +WHD  DLYHIMF
Sbjct: 2   TLPIHQYPALLAKKAENLTALLAPFNAPELDVFASDTSHFRLRAEFRVWHDNGDLYHIMF 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQ TK+R R+D F   S LIN +M  ++A I+   LL  KLFQIDYL++ S Q  V+++Y
Sbjct: 62  DQATKQRYRVDQFPIASQLINRMMTVLLAEIKDNELLTRKLFQIDYLSTLSGQIAVSMLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L + W E A  L+  L    + +QLIGRA K KI LD DYV+E L V G+   YRQ+
Sbjct: 122 HKSLTEEWIEQAKLLKQRLIGYGFDVQLIGRATKQKIALDCDYVEEALNVDGQIYRYRQV 181

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPN  +N+ MLEW  A T   +GDLLELYCGNGNFS+ LA  F +VLA EI+K S
Sbjct: 182 ENSFTQPNGKMNIKMLEWARACTANSKGDLLELYCGNGNFSIALANQFRKVLATEISKSS 241

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE+A+YNIA N V+N++I+RMS++EFT+AM   R F RL+ ID+  Y   TIFVDPPR G
Sbjct: 242 VESAQYNIAVNGVDNLQIIRMSAEEFTEAMNGVRVFYRLRGIDLKQYDCNTIFVDPPRVG 301

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ MVQ Y  ILYISCNP +L  +L  L+ TH IER ALFDQFPYT H+E GV L+
Sbjct: 302 LDQATLEMVQGYERILYISCNPHTLADNLKQLTQTHRIERCALFDQFPYTEHIESGVWLI 361

Query: 364 RK 365
           R 
Sbjct: 362 RN 363


>gi|315125842|ref|YP_004067845.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315014356|gb|ADT67694.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 365

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/357 (54%), Positives = 257/357 (71%), Gaps = 1/357 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QY+ QL EK  R+ +    F V  L++F SEPI+YR RAEF +WHDGDDL+HIMFDQQTK
Sbjct: 10  QYDAQLNEKEQRITEQFQRFGVKQLEVFSSEPINYRQRAEFRVWHDGDDLFHIMFDQQTK 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           +++R+D F P + L+  +M  M+  ++   +LR KLFQIDYL++ S + +V+L+YH+ LD
Sbjct: 70  DKIRVDTFDPAAPLVGEIMQVMIDNLKGCEVLRRKLFQIDYLSTLSGEILVSLLYHKPLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W      L++ L + +Y+I  IGRA K K  L  D+V ERL V G+ LIY+Q+ENSFT
Sbjct: 130 EHWLTEINALKEKL-SSQYKIDFIGRARKQKEKLGDDFVTERLMVNGQELIYQQVENSFT 188

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N+ MLEW     K +  DLLELYCGNGNFS+ LA  F++VLA EI+K SV +A+
Sbjct: 189 QPNAKVNIKMLEWAQELCKPLNNDLLELYCGNGNFSIALAGSFNKVLATEISKSSVHSAQ 248

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           YNIA N V N+ I+RMSS+EFTQAM+ ER F+RL  ID+ SY  +TI VDPPR+G+D  T
Sbjct: 249 YNIAQNQVTNLDIIRMSSEEFTQAMKGERTFSRLDGIDLSSYNCQTILVDPPRAGMDTLT 308

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +V  Y +I+YISCNPD+L RDL  L+ TH ++R A+FDQFPYT H+E GV L +K
Sbjct: 309 CDLVANYENIIYISCNPDTLERDLEHLTQTHEVKRFAIFDQFPYTHHIESGVFLQKK 365


>gi|163749943|ref|ZP_02157188.1| tRNA (uracil-5-)-methyltransferase [Shewanella benthica KT99]
 gi|161330457|gb|EDQ01436.1| tRNA (uracil-5-)-methyltransferase [Shewanella benthica KT99]
          Length = 365

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 189/356 (53%), Positives = 255/356 (71%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL +K  +L Q+   F  P L++F SE  HYRMR EF IWHDGDD+Y+ MFD+    
Sbjct: 11  YDAQLEKKRIKLEQIFTDFDTPRLEVFGSETAHYRMRCEFRIWHDGDDMYYYMFDKALDS 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+YH+ LD 
Sbjct: 71  KVRCDQFLPASSLINEMMPALIEELKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDQ 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L++ L +R +++ LIGRA K K+  D+D+V E L V G  L Y QIENSFTQ
Sbjct: 131 QWEVEAKVLKEKLASR-FKVNLIGRARKQKLIFDKDFVVESLNVNGEQLHYHQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  + V MLEW +  TK   GDLLELYCGNGNFS+ LA++FDRVLA E+AKPSV++A+Y
Sbjct: 190 PNGKVAVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKPSVQSAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY   TIFVDPPR+GLD  TV
Sbjct: 250 NIEINKIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGLDSNTV 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  I+YISCNP++L  +L+ L+ TH I R ALFDQFPYT HME GVLL +K
Sbjct: 310 KLVQGYERIVYISCNPNTLTENLAELTKTHNITRFALFDQFPYTDHMESGVLLEKK 365


>gi|221135408|ref|ZP_03561711.1| tRNA (uracil-5-)-methyltransferase [Glaciecola sp. HTCC2999]
          Length = 361

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/359 (52%), Positives = 257/359 (71%), Gaps = 4/359 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y  QL+EK  RL  ++  F  P   N+ I+ S+  HYR RAEF +WHDGDDLYHIMF+Q+
Sbjct: 4   YASQLSEKNARLTSLLSPFTHPSNLNIDIYPSQASHYRQRAEFRVWHDGDDLYHIMFNQE 63

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           TK++ R+D+F   SLLIN +M  ++  I+  P+LR KLFQIDYL++ ++Q +V+++YH+ 
Sbjct: 64  TKQQYRVDHFPVASLLINQVMDALITRIKTIPILRDKLFQIDYLSATTNQIVVSMLYHKK 123

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L D W E    L   + ++ YQIQ IGRA K K  ++ DYV E+L++ G+   ++ IENS
Sbjct: 124 LSDEWVEKINELHTEM-SKTYQIQFIGRAKKQKTIINHDYVIEKLSIHGKEYTFKHIENS 182

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +N HM+EWV + T+ I GDLLELYCG GNF++ L+ +FD V+A EI+K SV A
Sbjct: 183 FTQPNAEVNCHMIEWVASHTQSIAGDLLELYCGAGNFTIPLSDYFDNVMATEISKTSVNA 242

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ NIA N + N  I+RMSS+EF  A  +ER + RL+ ID+ SY F T+ VDPPR+GLD 
Sbjct: 243 AQDNIAYNDIQNCTILRMSSEEFVSAKNKERAYRRLEGIDLDSYDFTTVLVDPPRAGLDM 302

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           AT+ M+  Y +I+YISCNPD+L  +L  L+ THTIER ALFDQFP+T H+E GV+L R+
Sbjct: 303 ATINMINQYEYIIYISCNPDTLAHNLQELTKTHTIERAALFDQFPFTHHIESGVILKRR 361


>gi|254229783|ref|ZP_04923190.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. Ex25]
 gi|151937682|gb|EDN56533.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. Ex25]
          Length = 337

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/335 (56%), Positives = 249/335 (74%), Gaps = 2/335 (0%)

Query: 33  LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA 92
           L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+E+ R+D F   S LIN LM  ++ 
Sbjct: 2   LEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETREKYRVDQFPAASRLINDLMPLLVE 61

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
            ++    LR KLFQ+D+L++ S + +V+L+YHR LD+ W E A  L+  L+   + + +I
Sbjct: 62  AMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLDEEWIENAKALKQRLNDEGFNLNII 121

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
           GRA K KI LDRDYV E+L V G++ IY+Q+ENSFTQPN  +   MLEW +  T+   GD
Sbjct: 122 GRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFTQPNGKVAEKMLEWAVDCTQESTGD 181

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+YNIAAN ++NV+I+R+S++EFTQA
Sbjct: 182 LLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQYNIAANKIDNVQILRLSAEEFTQA 241

Query: 273 MRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCR 330
           +  +REF RL+D  +D+ SY   TIFVDPPR+G+D  T  MVQ Y  I+YISCNP++L  
Sbjct: 242 IEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGMDADTCKMVQGYERIMYISCNPETLKE 301

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +L IL  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 302 NLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 336


>gi|229517004|ref|ZP_04406450.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC9]
 gi|229346067|gb|EEO11039.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC9]
          Length = 372

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/333 (54%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++
Sbjct: 191 PNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQF 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  
Sbjct: 251 NIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340
           T  MVQ Y  ILYISCNP++L  +L +L    +
Sbjct: 311 TCKMVQGYERILYISCNPETLQENLQVLGGNPS 343


>gi|71279320|ref|YP_267102.1| tRNA (uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H]
 gi|123634093|sp|Q48A12|TRMA_COLP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|71145060|gb|AAZ25533.1| tRNA (uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H]
          Length = 364

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/358 (50%), Positives = 259/358 (72%), Gaps = 1/358 (0%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           D Y+ QL++K   + ++   F +P   ++ S P++YR RAEF +WH+GDDLY+IMFD +T
Sbjct: 8   DNYDAQLSKKQQDMAKLFSDFNLPAPDLYPSVPLNYRQRAEFRVWHEGDDLYYIMFDSKT 67

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           KE+ R+D F   S LIN  M  ++ATI+ +  LR KLFQ+D+L++ S + +++++YH+ L
Sbjct: 68  KEKFRVDDFPVASELINNAMKALLATIKDQRELRFKLFQVDFLSTLSGELLISMLYHKPL 127

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           +D W+  A +L+  L      + +IGRA K KI +D+DYV E L V G+T +Y+Q+ENSF
Sbjct: 128 EDNWQIEAEKLKAQLSTIA-PVDIIGRAKKQKIIVDKDYVMESLNVGGKTYVYQQVENSF 186

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPNAG+N  ML W   AT+   GDL+ELYCGNGNFS+ LA +F+RVL  EI+K SV +A
Sbjct: 187 TQPNAGVNEQMLLWAQQATQNAGGDLIELYCGNGNFSIALAENFERVLGTEISKTSVRSA 246

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + NI+ N ++N+ IVRMSS+EF+QAM  ER+F RL+D D+ +Y + T+ VDPPR+GLD  
Sbjct: 247 QINISENGIDNIDIVRMSSEEFSQAMNGERKFRRLEDFDLTTYNYDTVLVDPPRAGLDRD 306

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +V +V+ +  I+YISCNP++L  +L++L  TH I++ ALFDQFPYT H+E GV+L RK
Sbjct: 307 SVELVRRFNKIIYISCNPETLKDNLALLVETHQIDKFALFDQFPYTDHIETGVILTRK 364


>gi|297518619|ref|ZP_06937005.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli OP50]
          Length = 286

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/281 (66%), Positives = 223/281 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPN  +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNTAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ I
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286


>gi|153840002|ref|ZP_01992669.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ3810]
 gi|149746450|gb|EDM57461.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ3810]
          Length = 318

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/317 (57%), Positives = 238/317 (75%), Gaps = 2/317 (0%)

Query: 51  IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
           +WH+G+DLY+IMF+Q+T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L
Sbjct: 1   VWHEGEDLYYIMFNQETREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFL 60

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
           ++ S + +V+L+YHR LD+ W E A  L+  L+   + + +IGRA K KI LDRDYV E+
Sbjct: 61  STLSGEILVSLLYHRQLDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIILDRDYVIEK 120

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           L V G++ IY+Q+ENSFTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++
Sbjct: 121 LDVNGQSYIYQQVENSFTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQN 180

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIH 288
           FDRVLA E+AKPSVE+A+YNIAAN ++NV+I+RMS++EFT+AM  +REF RLKD  +D+ 
Sbjct: 181 FDRVLATELAKPSVESAQYNIAANKIDNVQIIRMSAEEFTEAMEGKREFRRLKDNGVDLK 240

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348
           SY   TIFVDPPR+G+D  T  MVQ Y  I+YISCNP++L  +L ILS TH + R ALFD
Sbjct: 241 SYNCNTIFVDPPRAGMDVDTCKMVQGYERIMYISCNPETLKENLDILSETHNVTRFALFD 300

Query: 349 QFPYTRHMECGVLLVRK 365
           QFPYT HME GVLL RK
Sbjct: 301 QFPYTHHMEAGVLLERK 317


>gi|134035060|sp|Q5QVT1|TRMA_IDILO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 366

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/357 (50%), Positives = 256/357 (71%), Gaps = 1/357 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y QQLA+K DR+R+M   F +  +++F S   HYRMRAEF +WH+GDDLY+IMF+ +T+
Sbjct: 10  EYPQQLAQKADRVREMFRPFHLNEVEVFESPASHYRMRAEFRVWHEGDDLYYIMFNPETR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E++R++ F+PGSLLIN LM E+++ ++   +LR KLFQ+D+LT+ + +AI++L+YHR LD
Sbjct: 70  EKIRMNEFIPGSLLINELMKELISLLKPNDVLRRKLFQVDFLTTTTGEAIISLLYHRPLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W + AI+LR+AL +   ++++IGRA K K  L ++ V E + V G++ +  Q ENSFT
Sbjct: 130 DQWEQEAIQLREALTSIA-KVEVIGRARKQKRVLYKESVTEEVKVDGKSYLSLQTENSFT 188

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA IN  M+ W          DLLELYCGNGNF+L LA +F+RVLA EI+K SV AAR
Sbjct: 189 QPNAIINQQMISWAKRHAGNNSHDLLELYCGNGNFTLPLAENFNRVLATEISKSSVAAAR 248

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   N++ NV +VRMS++EF+ A+  E E  R  D +IHS+  +T+ VDPPR+GLD  T
Sbjct: 249 ENAELNNIKNVTVVRMSAEEFSAALSGELESKRAADAEIHSFDCQTVLVDPPRAGLDKDT 308

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + +V  Y  I+YISCNP++L  ++  LS++H +   A+FDQFPYT H+E GV+L RK
Sbjct: 309 LKLVSQYQRIIYISCNPETLTENIHDLSSSHKVTAAAMFDQFPYTDHIETGVVLERK 365


>gi|119478185|ref|ZP_01618241.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2143]
 gi|119448694|gb|EAW29938.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2143]
          Length = 380

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/357 (49%), Positives = 255/357 (71%), Gaps = 6/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-K 68
           Y QQL  K D +      F  P L IF S  +HYR+RAEF IWH+GDD ++ MF++   K
Sbjct: 24  YSQQLQTKADLITSRFADFDAPALTIFNSPALHYRVRAEFKIWHEGDDSFYAMFNKAAPK 83

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           + +RID F  GS LIN+LM ++M+ IR + +LR KLFQ+++LT+ S ++++T+IYH+ L+
Sbjct: 84  QPVRIDTFPIGSELINSLMSKLMSEIRSDSMLRLKLFQVEFLTTLSGESLITMIYHKPLN 143

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D WR  A  L+  L  R     +IGR+ K ++ L +D V E LTV GR  +Y+Q+ENSFT
Sbjct: 144 DDWRRLAEILQQKLDTR-----IIGRSKKQRMVLSQDCVTETLTVDGRQYLYQQVENSFT 198

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N  ML W L ++  + GDL+ELYCGNGNF+ VLA +FD+VLA EI+K SV++A+
Sbjct: 199 QPNAQVNQKMLSWALTSSADLGGDLVELYCGNGNFTAVLAANFDKVLATEISKTSVKSAQ 258

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +N   N +NNV I RMS++EF+ A+  +R F RLKD+D+ SY F T+ VDPPR+GLD AT
Sbjct: 259 HNFEMNGINNVHIARMSAEEFSSALAGDRTFRRLKDVDLSSYTFSTVLVDPPRAGLDTAT 318

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             ++  + +ILYISCNP++L ++++ L+ TH I ++A+FDQFPYT H+ECG++L ++
Sbjct: 319 TQLISRFDNILYISCNPETLYQNVADLNKTHRITKIAIFDQFPYTDHIECGIMLKKR 375


>gi|89092512|ref|ZP_01165465.1| tRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92]
 gi|89083024|gb|EAR62243.1| tRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92]
          Length = 362

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/359 (50%), Positives = 247/359 (68%), Gaps = 6/359 (1%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + YE QL EK  +  Q    F +P +++F S   HYRMR EF +WHD DDLY++MF++  
Sbjct: 9   ENYESQLVEKKTKTAQQFAEFDLPEIEVFESPRSHYRMRCEFRVWHDEDDLYYVMFEKGN 68

Query: 68  KE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           K  R+RID+    S  I+ +M E++  I+   +LR KLFQID+L++ S + +VTL+YHR 
Sbjct: 69  KHARIRIDHCPMVSERIHNVMFELLEAIKPSEVLRRKLFQIDFLSTLSGELLVTLLYHRP 128

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +D+ W E A  L++     K+ IQLIGR+ KTKI LD+D+V E L V G    Y+Q+ENS
Sbjct: 129 IDEVWAEEARVLKE-----KFNIQLIGRSRKTKILLDQDFVVETLNVKGGEFHYKQVENS 183

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F+QPNA +  HM+ W + AT+G  GD++ELYCGNGNF+L LA++F RV+A EI+K SV A
Sbjct: 184 FSQPNAEVCQHMINWAIDATEGAGGDMVELYCGNGNFTLPLAQNFRRVVATEISKTSVRA 243

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+YNI  N V NV +VR+SS+EF+Q +    E  R KD+ +    F T+ VDPPRSGLDD
Sbjct: 244 AQYNIEVNGVENVDVVRISSEEFSQVLSGAVEKRRTKDLGLKECNFTTVLVDPPRSGLDD 303

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            TV  VQ Y +ILYISCNP++L  +L  ++ TH +ER A+FDQFPYT H+E GV L RK
Sbjct: 304 DTVKQVQNYDNILYISCNPETLKTNLEEITKTHKLERFAIFDQFPYTDHLESGVFLTRK 362


>gi|145640957|ref|ZP_01796539.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021]
 gi|145274471|gb|EDK14335.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.4-21]
          Length = 304

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/304 (57%), Positives = 227/304 (74%)

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           MFDQ T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L
Sbjct: 1   MFDQATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSL 60

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YH+ L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YR
Sbjct: 61  LYHKTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYR 120

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q+ENSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAK
Sbjct: 121 QVENSFTQPNAMVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAK 180

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           PSV AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR
Sbjct: 181 PSVAAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPR 240

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GLD  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME G+ 
Sbjct: 241 AGLDPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGLW 300

Query: 362 LVRK 365
           L+RK
Sbjct: 301 LIRK 304


>gi|326797231|ref|YP_004315051.1| tRNA (uracil-5-)-methyltransferase [Marinomonas mediterranea MMB-1]
 gi|326547995|gb|ADZ93215.1| tRNA (uracil-5-)-methyltransferase [Marinomonas mediterranea MMB-1]
          Length = 364

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/358 (49%), Positives = 245/358 (68%), Gaps = 6/358 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-TK 68
           YEQQL EKVD L+ +M  F +P L +++S   HYRMRAEF +WHDGDD+Y+ MFD +  +
Sbjct: 11  YEQQLDEKVDALKALMAEFSMPELNVYKSAETHYRMRAEFRVWHDGDDMYYAMFDSKDPR 70

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             +R+D F   S LIN LM  ++  +R  P+LR KLFQ+D+LT+Q+ +A+++L+YH+ +D
Sbjct: 71  TPIRVDQFPVASKLINELMPALLEAVRHVPILRHKLFQVDFLTTQTGEALISLLYHKPID 130

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W + A  L  +  A       IGR+ K K  L RD+V E LTV G+   Y+Q+ENSFT
Sbjct: 131 DEWEDAAKELNKSFPA----CHFIGRSRKKKKVLTRDFVMETLTVNGQKYHYQQVENSFT 186

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNAGI+  MLEW +  T+G  GDLLE+YCGNGNFS+ LAR FD+V+  EIAK SV +A 
Sbjct: 187 QPNAGISEKMLEWAMDVTQGCSGDLLEMYCGNGNFSIPLARRFDQVIGTEIAKVSVNSAS 246

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGLDDA 307
            NIA N + NV++V+M+S++ + A+  E E  + L    + +     + VDPPR+GLDDA
Sbjct: 247 LNIAMNGMKNVQVVKMASEDVSAALNGEGELPKALVQAGMANLSPSVVLVDPPRAGLDDA 306

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           TV +V+    ILYISCNP++L  ++  LS+TH + R ALFDQFPYT H+E GV L R+
Sbjct: 307 TVELVRKVDKILYISCNPETLKNNMQALSSTHDVTRFALFDQFPYTHHVEAGVFLERR 364


>gi|262831412|sp|B3PJ74|TRMA_CELJU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 366

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/356 (52%), Positives = 241/356 (67%), Gaps = 5/356 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YE QL +K+ RL Q   +F +P + +FRS   H+RMR EF IWH+     ++MF Q  K 
Sbjct: 16  YEAQLQQKLIRLNQDFASFNLPEISVFRSPEKHFRMRTEFRIWHERGTAMYVMFSQTDKR 75

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
              I  F  GS  IN LM E+MA +     LR KLFQ+++LTS S+QA++TL+YH+ LD+
Sbjct: 76  PYPIREFPIGSERINQLMPELMALVNRHECLRHKLFQVEFLTSLSNQALITLVYHKPLDE 135

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  LR  L+     +++IGR+ K KI L+RD++ E L V GR   Y+Q+E SFTQ
Sbjct: 136 EWISAATDLRKQLN-----VEIIGRSRKQKILLERDHIIECLKVNGREYRYQQVEGSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   ML W    T+   GDLLELYCGNGNF+L LA++FDRVLA EI+K SV++A Y
Sbjct: 191 PNARVCEQMLSWAQEQTRHTGGDLLELYCGNGNFTLPLAQNFDRVLATEISKTSVDSALY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N V N++I RMSS+EFTQAM   REFNRLK I ++ YRF TIFVDPPR+GLD AT 
Sbjct: 251 NSRLNQVENLQIARMSSEEFTQAMDGVREFNRLKHISLNDYRFSTIFVDPPRAGLDPATC 310

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            + Q + +I+YISCNP++L  +L  L+ TH I   A FDQFPYT H+ECGVLL R+
Sbjct: 311 HLAQRFDNIVYISCNPETLKDNLQTLTQTHQICTFAAFDQFPYTHHLECGVLLQRR 366


>gi|192359782|ref|YP_001982649.1| tRNA (uracil-5-)-methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190685947|gb|ACE83625.1| tRNA (uracil-5-)-methyltransferase [Cellvibrio japonicus Ueda107]
          Length = 374

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/356 (52%), Positives = 241/356 (67%), Gaps = 5/356 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YE QL +K+ RL Q   +F +P + +FRS   H+RMR EF IWH+     ++MF Q  K 
Sbjct: 24  YEAQLQQKLIRLNQDFASFNLPEISVFRSPEKHFRMRTEFRIWHERGTAMYVMFSQTDKR 83

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
              I  F  GS  IN LM E+MA +     LR KLFQ+++LTS S+QA++TL+YH+ LD+
Sbjct: 84  PYPIREFPIGSERINQLMPELMALVNRHECLRHKLFQVEFLTSLSNQALITLVYHKPLDE 143

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  LR  L+     +++IGR+ K KI L+RD++ E L V GR   Y+Q+E SFTQ
Sbjct: 144 EWISAATDLRKQLN-----VEIIGRSRKQKILLERDHIIECLKVNGREYRYQQVEGSFTQ 198

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   ML W    T+   GDLLELYCGNGNF+L LA++FDRVLA EI+K SV++A Y
Sbjct: 199 PNARVCEQMLSWAQEQTRHTGGDLLELYCGNGNFTLPLAQNFDRVLATEISKTSVDSALY 258

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N V N++I RMSS+EFTQAM   REFNRLK I ++ YRF TIFVDPPR+GLD AT 
Sbjct: 259 NSRLNQVENLQIARMSSEEFTQAMDGVREFNRLKHISLNDYRFSTIFVDPPRAGLDPATC 318

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            + Q + +I+YISCNP++L  +L  L+ TH I   A FDQFPYT H+ECGVLL R+
Sbjct: 319 HLAQRFDNIVYISCNPETLKDNLQTLTQTHQICTFAAFDQFPYTHHLECGVLLQRR 374


>gi|56475741|ref|YP_157330.1| tRNA (uracil-5-)-methyltransferase [Aromatoleum aromaticum EbN1]
 gi|81599034|sp|Q5P8D0|TRMA_AZOSE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|56311784|emb|CAI06429.1| tRNA (Uracil-5-)-methyltransferase [Aromatoleum aromaticum EbN1]
          Length = 368

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/358 (50%), Positives = 242/358 (67%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QT 67
           +Y  QLA+KV + +     F VP   +F S P+HYR+RAEF +WHDG+ + + MFD  + 
Sbjct: 10  EYASQLADKVTQFKHAFTPFAVPEPTVFPSAPLHYRLRAEFRMWHDGERIDYAMFDPAEP 69

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K+ + I+ F   +  I A M  +   +R    L+ +LFQ+++L + S + +++LIYHR L
Sbjct: 70  KQPIAIEQFDIAAEPICAAMPRLRERLRASETLKRRLFQVEFLATLSGELMISLIYHRPL 129

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D++W   A  L   L+     +QLIGR+ K KI LDRD+V ER  + GR L Y+QIE SF
Sbjct: 130 DESWEAAARELAAELN-----VQLIGRSRKQKIVLDRDWVLERFALDGRPLQYKQIEGSF 184

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN G+N  ML W     +G+ GDLLELYCGNGNF++ LA  FDRVLA E++K SVEAA
Sbjct: 185 TQPNGGVNRQMLGWACEQVRGVGGDLLELYCGNGNFTVALAPLFDRVLATEVSKTSVEAA 244

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            YN+AAN + NV +VRMSS E + A+ R REF R+KD+D+  YRF T+FVDPPRSGLD  
Sbjct: 245 HYNLAANDIGNVAMVRMSSDEISAALARTREFRRMKDVDLDRYRFSTLFVDPPRSGLDAP 304

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           TV + + +  ILYISCNP +L  +++ L  TH I   A+FDQFPYTRH+ECG+LL R+
Sbjct: 305 TVELARGFDRILYISCNPQTLQENVAALQATHGIAGAAVFDQFPYTRHLECGLLLTRR 362


>gi|87121190|ref|ZP_01077081.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121]
 gi|86163682|gb|EAQ64956.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121]
          Length = 367

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/361 (49%), Positives = 247/361 (68%), Gaps = 6/361 (1%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           IDQY+ QLAEK+ RL ++M    +P  +IF SE  HYRMRAEF IWHDGDD+Y+ MFD  
Sbjct: 8   IDQYQPQLAEKISRLDELMATLDLPAAEIFESEASHYRMRAEFRIWHDGDDMYYAMFDSN 67

Query: 67  -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
             +  +R+D F   S LIN LM  ++  ++  P+LR KLFQ+D+LT+Q+ +A+++++YH+
Sbjct: 68  DPRTPIRVDQFPVASELINELMPALLDAVKTVPVLRHKLFQVDFLTTQTGEALISMLYHK 127

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +D+ W   A  L +A          IGR+ K K+ L RD+V E LTV G+   Y+Q+EN
Sbjct: 128 PIDEDWFAAAQTLNEAFP----HCHFIGRSRKKKMILTRDFVMETLTVNGKKYHYQQVEN 183

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNAGIN  ML W L  T+   GDLLE+YCGNGNFS+ LAR FDRV+A EI+K SV 
Sbjct: 184 SFTQPNAGINESMLSWALDVTQNESGDLLEMYCGNGNFSIPLARRFDRVVATEISKVSVN 243

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGL 304
           +A+ NIA N ++NV++V+M+S++ + A+  + E  + L    + S     + VDPPR+GL
Sbjct: 244 SAQLNIAINGMSNVQVVKMASEDVSAALNGQTELPKQLIQAGMESLEPSVVLVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +++    ILYISCNP++L  +L  LS TH++ER A+FDQFPYT H+E GV LVR
Sbjct: 304 DSDTVELIRKVDKILYISCNPETLKANLDALSDTHSVERYAVFDQFPYTHHIETGVYLVR 363

Query: 365 K 365
           +
Sbjct: 364 R 364


>gi|262372741|ref|ZP_06066020.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter junii SH205]
 gi|262312766|gb|EEY93851.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter junii SH205]
          Length = 361

 Score =  365 bits (937), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 178/361 (49%), Positives = 246/361 (68%), Gaps = 11/361 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF----DQ 65
           Y+QQL EKV+R+      F  P L++F+S   H+RMRAEF IWH  DDL++ MF    D 
Sbjct: 5   YQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRIWHTEDDLFYAMFERAEDG 64

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + K  +RID F      IN LM  ++  ++  P+L  ++F+ D+L++ S + +VTLIYHR
Sbjct: 65  KQKAVIRIDDFPIADSSINNLMPLLLEELKATPILSQRIFEADFLSTLSGEMLVTLIYHR 124

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD  W   A  L D L+     I+++GR+   K+ +  DYV E+L V GRT  Y+QIE+
Sbjct: 125 RLDAEWESAAKALADKLN-----IKIMGRSRGQKVIIGDDYVVEQLNVHGRTFKYKQIES 179

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +  HMLEW   A +G Q DLLELYCGNGNF+L L+  F RVLA E+AK SV 
Sbjct: 180 SFTQPNAQVCQHMLEWACDAAEGAQKDLLELYCGNGNFTLPLSLKFKRVLATELAKSSVH 239

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSG 303
           AA++NI  N ++N+++ R+S++EFTQA + ER F RL   +IDI SY F T+FVDPPR+G
Sbjct: 240 AAQWNIEQNQIDNIQVARLSAEEFTQAYQGERTFRRLLEAEIDIQSYDFDTVFVDPPRAG 299

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ ++Q +  I+YISCNPD+L  +L IL+ TH I++ A+FDQFP+T H+E GVLL 
Sbjct: 300 IDDETLKLLQGFERIIYISCNPDTLHDNLKILTQTHRIQKFAMFDQFPFTHHVESGVLLE 359

Query: 364 R 364
           +
Sbjct: 360 K 360


>gi|56461373|ref|YP_156654.1| tRNA (uracil-5-)-methyltransferase [Idiomarina loihiensis L2TR]
 gi|56180383|gb|AAV83105.1| tRNA (uracil-5-)-methyltransferase [Idiomarina loihiensis L2TR]
          Length = 342

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 170/342 (49%), Positives = 243/342 (71%), Gaps = 1/342 (0%)

Query: 24  MMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLI 83
           M   F +  +++F S   HYRMRAEF +WH+GDDLY+IMF+ +T+E++R++ F+PGSLLI
Sbjct: 1   MFRPFHLNEVEVFESPASHYRMRAEFRVWHEGDDLYYIMFNPETREKIRMNEFIPGSLLI 60

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
           N LM E+++ ++   +LR KLFQ+D+LT+ + +AI++L+YHR LDD W + AI+LR+AL 
Sbjct: 61  NELMKELISLLKPNDVLRRKLFQVDFLTTTTGEAIISLLYHRPLDDQWEQEAIQLREALT 120

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
           +   ++++IGRA K K  L ++ V E + V G++ +  Q ENSFTQPNA IN  M+ W  
Sbjct: 121 SIA-KVEVIGRARKQKRVLYKESVTEEVKVDGKSYLSLQTENSFTQPNAIINQQMISWAK 179

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                   DLLELYCGNGNF+L LA +F+RVLA EI+K SV AAR N   N++ NV +VR
Sbjct: 180 RHAGNNSHDLLELYCGNGNFTLPLAENFNRVLATEISKSSVAAARENAELNNIKNVTVVR 239

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
           MS++EF+ A+  E E  R  D +IHS+  +T+ VDPPR+GLD  T+ +V  Y  I+YISC
Sbjct: 240 MSAEEFSAALSGELESKRAADAEIHSFDCQTVLVDPPRAGLDKDTLKLVSQYQRIIYISC 299

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP++L  ++  LS++H +   A+FDQFPYT H+E GV+L RK
Sbjct: 300 NPETLTENIHDLSSSHKVTAAAMFDQFPYTDHIETGVVLERK 341


>gi|226326751|ref|ZP_03802269.1| hypothetical protein PROPEN_00611 [Proteus penneri ATCC 35198]
 gi|225204588|gb|EEG86942.1| hypothetical protein PROPEN_00611 [Proteus penneri ATCC 35198]
          Length = 292

 Score =  363 bits (932), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 170/287 (59%), Positives = 219/287 (76%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  +L    Y+ QL EK  RL+ MM  F  P  ++F S   HYRMRAEF IWH+ D LYH
Sbjct: 1   MQNSLPTQTYQSQLNEKTQRLQTMMAPFNAPEAEVFSSPEQHYRMRAEFRIWHEDDSLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ+TK+R+R+D F   S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+
Sbjct: 61  IMFDQETKQRIRVDQFPVASQLINKMMVVLLAEIKDKPTLRKKLFQIDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ +D+ W++ A  LR  L A+ + +QLIGRA KTKI LD D++DE L VAG+ +IY
Sbjct: 121 LLYHKKIDETWQQEAQALRQILIAQGFDVQLIGRAYKTKIMLDNDFIDEVLPVAGKEMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW L AT+  +GDLLELYCGNGNFSL LAR+FDRVLA EIA
Sbjct: 181 RQVENSFTQPNAQVNIKMLEWALKATENAKGDLLELYCGNGNFSLALARNFDRVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           KPSV AA+YNIA NH++NVKI+RMS+++FTQAM   REF RL+ ID+
Sbjct: 241 KPSVYAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGIDL 287


>gi|50084803|ref|YP_046313.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ADP1]
 gi|115305867|sp|Q6FBS0|TRMA_ACIAD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|49530779|emb|CAG68491.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ADP1]
          Length = 361

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 178/359 (49%), Positives = 238/359 (66%), Gaps = 11/359 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF----DQ 65
           Y+QQL  K++R+      F  P L++F S   H+RMRAEF IWH  +DL++ MF    D 
Sbjct: 5   YQQQLQSKIERITHQFAEFNPPALEVFESPEQHFRMRAEFRIWHTDNDLFYAMFERNEDG 64

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + KE +R+D F      IN LM  ++  ++  P L  ++F+ D+LT+ S + +VTLIYHR
Sbjct: 65  KQKEVIRVDEFPIADQSINQLMPRLLEELKANPTLSQRIFEADFLTTLSGEMLVTLIYHR 124

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD  W   A  L     A K  I+++GR+   K+ +  DYV E+L V GRT  Y+QIE+
Sbjct: 125 KLDTEWESAAKAL-----AEKLNIKIMGRSRGQKVIIGDDYVVEQLNVHGRTFKYKQIES 179

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W     +G   DLLELYCGNGNF+L L+ HF RVLA E+AK SV 
Sbjct: 180 SFTQPNAEVCQKMLTWACDVIQGSNQDLLELYCGNGNFTLPLSLHFRRVLATELAKSSVY 239

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI  N + N++I R+S++EFTQA + EREF RL++  IDI SY F TIFVDPPR+G
Sbjct: 240 AAQWNIEQNQIENIQIARLSAEEFTQAYQGEREFRRLQEANIDIQSYEFDTIFVDPPRAG 299

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +DD T+ +++ +  ILYISCNPD+L  +L  LS TH I R ALFDQFP+T H+E GVLL
Sbjct: 300 IDDETLKLLKGFKRILYISCNPDTLYNNLKTLSQTHKITRFALFDQFPFTHHVESGVLL 358


>gi|226954161|ref|ZP_03824625.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226835110|gb|EEH67493.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 361

 Score =  361 bits (927), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 177/361 (49%), Positives = 241/361 (66%), Gaps = 11/361 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF----DQ 65
           Y+QQL EKV+R+      F  P L++F+S   H+RMRAEF +WH  DDL++ MF    D 
Sbjct: 5   YQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRLWHTDDDLFYAMFERAEDG 64

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + K  +RID F      IN LM  ++  ++  P+L  ++F+ D+L + S + +VTLIYHR
Sbjct: 65  KQKTVIRIDEFPIADQSINDLMPRLLEELKAVPILSQRIFEADFLATLSGEMLVTLIYHR 124

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD  W   A  L     A K  I+++GR+   K+ +  DYV E+L V GR   Y+QIE+
Sbjct: 125 RLDSEWEAAAKTL-----AEKLNIKIMGRSRGQKVIVGDDYVVEQLNVHGRIFKYKQIES 179

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPN  +  HMLEW   A +  Q DLLELYCGNGNF+L L+  F+RVLA E+AK SV 
Sbjct: 180 SFTQPNTQVCKHMLEWACDAAQNSQKDLLELYCGNGNFTLPLSLKFNRVLATELAKSSVY 239

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI  N + N+++ R+S++EFTQA   EREF RL++  IDI SY F TIFVDPPR+G
Sbjct: 240 AAQWNIEQNQIENIQVARLSAEEFTQAYEGEREFRRLQEANIDIQSYHFDTIFVDPPRAG 299

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DDAT+ ++Q +  I+YISCNPD+L  +L  L+ TH I + ALFDQFP+T H+E GVLL 
Sbjct: 300 IDDATLALMQGFERIIYISCNPDTLHDNLKTLTQTHRISKFALFDQFPFTHHIESGVLLE 359

Query: 364 R 364
           +
Sbjct: 360 K 360


>gi|329120742|ref|ZP_08249404.1| tRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327460539|gb|EGF06875.1| tRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 364

 Score =  361 bits (927), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 176/362 (48%), Positives = 240/362 (66%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y +QLA+K D LR++     +P   +F S   HYRMRAEF IWH+G    + MF+   K 
Sbjct: 6   YARQLADKTDFLRRLFAGVAMPEWAVFPSPERHYRMRAEFRIWHEGGGTSYAMFENGKKA 65

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R+  F   S  INALM E++A +  +P+L+ +LFQ ++L++ S   +V+LIYHR
Sbjct: 66  GGASVVRLAQFPAASAAINALMPELLAALSTKPVLKNRLFQCEFLSTLSGDMLVSLIYHR 125

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDDAW+  A  L+     R+  I LIGR+   KI L RD+V E L   GR   YRQ E 
Sbjct: 126 KLDDAWQAAAQDLQ-----RRLGIALIGRSKGQKIVLSRDFVTEELEAGGRIFRYRQPEG 180

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           +F+QPNA +   MLEW      G+ GDLLELYCGNGNF+L LARHF RVLA E++K SV 
Sbjct: 181 AFSQPNAAVCAKMLEWACGCAAGLGGDLLELYCGNGNFTLPLARHFGRVLATEVSKTSVR 240

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI A+  +N++I R+S++EF QA    REF RL++  I +  Y F TIFVDPPR+G
Sbjct: 241 AAQWNIEADGADNIRIARLSAEEFAQAYGGGREFRRLREQGISLSDYAFSTIFVDPPRAG 300

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+AT+ ++Q + +I+YISCNP++L  +L +L  TH I+  ALFDQFP+T H+E GVLL 
Sbjct: 301 VDEATLRLMQGFDNIIYISCNPETLRANLDVLLQTHEIKAAALFDQFPFTAHIESGVLLR 360

Query: 364 RK 365
           RK
Sbjct: 361 RK 362


>gi|213417764|ref|ZP_03350880.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 239

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 165/239 (69%), Positives = 197/239 (82%)

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +D+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+ENS
Sbjct: 1   MDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVENS 60

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV A
Sbjct: 61  FTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSVAA 120

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGLD 
Sbjct: 121 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGLDS 180

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  +
Sbjct: 181 ETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTAR 239


>gi|152998306|ref|YP_001343141.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MWYL1]
 gi|189036041|sp|A6W3C7|TRMA_MARMS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|150839230|gb|ABR73206.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MWYL1]
          Length = 366

 Score =  360 bits (925), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 175/362 (48%), Positives = 244/362 (67%), Gaps = 6/362 (1%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-Q 66
           + YE+QL +K   L ++M    +P +++F S+P HYRMRAEF IWHDGDDLY+ MFD   
Sbjct: 9   EMYEKQLQDKQAELAKLMATLSLPEMEVFASQPTHYRMRAEFRIWHDGDDLYYAMFDSAD 68

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
            +  +R D F+  S LIN LM +++  +R  P+LR KLFQ+D+LT+ + +A+++L+YH+ 
Sbjct: 69  PRTPIRTDQFLAASRLINELMPKLLDAVRDVPVLRYKLFQVDFLTTTTGEALISLLYHKP 128

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +D  W     +L +A  A       IGR+ K K  + RD+V E LTV G+   Y+Q+ENS
Sbjct: 129 IDAEWNAAVQQLNNAFPA----CHFIGRSRKKKQIITRDFVMETLTVNGQKFHYQQVENS 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNAGI+  MLEW L  TK   GDLLE+YCGNGNFS+ LAR FDRV+A EI+K SV +
Sbjct: 185 FTQPNAGISEKMLEWALDVTKEASGDLLEMYCGNGNFSIPLARRFDRVVATEISKVSVNS 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGLD 305
           A+ NIA N ++NV++V+M+S++ + A+  + E  + L    +       + VDPPR+GLD
Sbjct: 245 AQLNIAINGMHNVQVVKMASEDVSAALNGDVELPKSLVQAGVSELTPSVVLVDPPRAGLD 304

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DATV +++    ILYISCNP++L  +L  LS TH + R A+FDQFPYT H+E GV L RK
Sbjct: 305 DATVELIRKIDSILYISCNPETLKANLEALSNTHEVVRYAMFDQFPYTHHVETGVFLRRK 364

Query: 366 PS 367
            S
Sbjct: 365 AS 366


>gi|294650226|ref|ZP_06727599.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823883|gb|EFF82713.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 361

 Score =  359 bits (922), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 176/361 (48%), Positives = 243/361 (67%), Gaps = 11/361 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF----DQ 65
           Y+QQL EKV+R+      F  P L++F+S   H+RMRAEF +WH  DDL++ MF    D 
Sbjct: 5   YQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRLWHTDDDLFYAMFERAEDG 64

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + K  +RI+ F      IN LM  ++  ++  P+L  ++F+ D+L +   + +VTLIYHR
Sbjct: 65  KQKTVIRINEFPIADQSINDLMPRLLEELKAVPILSQRIFEADFLATLCGEMLVTLIYHR 124

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD  W   A  L     A K  I+++GR+   K+ +  DYV E+L V GR   Y+QIE+
Sbjct: 125 RLDSEWEAAAKTL-----AEKLNIKIMGRSRGQKVIVGDDYVVEQLNVHGRIFKYKQIES 179

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +  HMLEW   A +  Q DLLELYCGNGNF+L L+  F+RVLA E+AK SV 
Sbjct: 180 SFTQPNAQVCKHMLEWACDAAQNSQKDLLELYCGNGNFTLPLSLKFNRVLATELAKSSVY 239

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI  N + N+++ R+S++EFTQA + EREF RL++  IDI SY+F TIFVDPPR+G
Sbjct: 240 AAQWNIEQNQIENIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYQFDTIFVDPPRAG 299

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DDAT+ ++Q +  I+YISCNPD+L  +L  L+ TH I + ALFDQFP+T H+E GVLL 
Sbjct: 300 IDDATLTLMQGFERIIYISCNPDTLHDNLKTLTQTHRISKFALFDQFPFTHHIESGVLLE 359

Query: 364 R 364
           +
Sbjct: 360 K 360


>gi|261379800|ref|ZP_05984373.1| tRNA (uracil-5-)-methyltransferase [Neisseria subflava NJ9703]
 gi|284797485|gb|EFC52832.1| tRNA (uracil-5-)-methyltransferase [Neisseria subflava NJ9703]
          Length = 360

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+QQLA+K   L+Q+      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  INALM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L++AW++ A  L     A    I +IGR+   KI L +D+V E LTV G+T  YRQIE 
Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALTVNGKTFRYRQIEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W   A K +  DLLELYCGNGNF+L L++HF++VLA E++K SV 
Sbjct: 179 SFTQPNAQVCQKMLTWACDAAKNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN + N+KI R+S++EFT+A  + REF RL++  ID+ +Y F TIFVDPPR+G
Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ +V  + ++LYISCNP++L  +L  L  THTIER ALFDQFP+T H+E GV L 
Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|260550065|ref|ZP_05824279.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. RUH2624]
 gi|260406820|gb|EEX00299.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. RUH2624]
          Length = 361

 Score =  356 bits (913), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 169/365 (46%), Positives = 244/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH   D+++ MF++
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTESDMFYAMFER 60

Query: 66  QTKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             +++    +RID F      IN LM  ++A ++ EPLL  +LF++D+L + S + +VTL
Sbjct: 61  NDEDKQKTVVRIDEFPIADKSINDLMPSLLAELKAEPLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L     A K  I+++GR+   K+ +  D+V E   ++ RT  Y+
Sbjct: 121 IYHRKLNQEWEQSAKAL-----AEKLNIKIMGRSRGQKVVIGDDFVVEEFELSNRTFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIRSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTKTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|117617414|gb|ABK51296.1| BryS [Candidatus Endobugula sertula]
          Length = 365

 Score =  355 bits (912), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 171/362 (47%), Positives = 247/362 (68%), Gaps = 9/362 (2%)

Query: 8   DQYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           DQY+QQL  KV    D+L Q+     V ++ ++ S   +YRMRAEF +WH G+  ++ M+
Sbjct: 9   DQYQQQLDNKVNIFKDQLTQLNHNMNVDHIAVYNSPHCYYRMRAEFKVWHTGNTSHYAMY 68

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           D+  KE + ++ F   +  IN LM  +MA I    +LR KLFQI++LT+Q++  +V+LIY
Sbjct: 69  DKNKKEPVFLEKFPVAAQSINQLMPLVMAEITQHEMLRKKLFQIEFLTTQTNDTLVSLIY 128

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L++ W      ++D L      I +IGR+ K K+ LDRD+V+E LTV G+   Y+Q 
Sbjct: 129 HKSLNEQWVHTISPIKDKL-----GINIIGRSRKQKMILDRDFVNEELTVNGKIFYYQQN 183

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           E SFTQPNA +   ML W +  +K   GDLLELYCGNGNF+L L+++F+RV+A E++K S
Sbjct: 184 EGSFTQPNAKVCEKMLAWAVNNSKNNHGDLLELYCGNGNFTLPLSQNFNRVIATEVSKSS 243

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V +A+ NI  N+++NV I+RMSS++F+ A+ + R F RLK+ D+ SY F T+FVDPPR+G
Sbjct: 244 VHSAQKNIQKNNIDNVSILRMSSEDFSLAIDKIRPFRRLKEYDLESYHFSTVFVDPPRAG 303

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD T+ M++ + +I+YISCNP +L  +L  L  TH IE LA FDQFPYT H+E GV+L 
Sbjct: 304 LDDGTIEMIKRFENIIYISCNPKTLINNLDSLCRTHNIEALAAFDQFPYTEHLEAGVILK 363

Query: 364 RK 365
           +K
Sbjct: 364 KK 365


>gi|313667944|ref|YP_004048228.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ST-640]
 gi|313005406|emb|CBN86840.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica 020-06]
          Length = 367

 Score =  355 bits (912), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 175/368 (47%), Positives = 243/368 (66%), Gaps = 11/368 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL +K DRL+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MNDYTQQLQDKKDRLKTLFADLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++   + +VT+I
Sbjct: 61  QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W    IR   AL  ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEW----IRAAQALQ-QQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKITRLSAEEFTEAYTGKREFKRLKEGGIALADYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D  T+ +V  + +I+YISCNP++L  +L  L+ THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLAQTHTVERAALFDQFPFTPHIESGV 355

Query: 361 LLVRKPSG 368
           LL +K  G
Sbjct: 356 LLKKKILG 363


>gi|261378870|ref|ZP_05983443.1| tRNA (uracil-5-)-methyltransferase [Neisseria cinerea ATCC 14685]
 gi|269144685|gb|EEZ71103.1| tRNA (uracil-5-)-methyltransferase [Neisseria cinerea ATCC 14685]
          Length = 367

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL  K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKASGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W    IR   AL  ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEW----IRAAQALQ-QQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVDPP
Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFTRLKEGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHTVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|78484518|ref|YP_390443.1| tRNA (uracil-5-)-methyltransferase [Thiomicrospira crunogena XCL-2]
 gi|123755299|sp|Q31JA4|TRMA_THICR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|78362804|gb|ABB40769.1| tRNA (uracil-5-)-methyltransferase [Thiomicrospira crunogena XCL-2]
          Length = 374

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 243/373 (65%), Gaps = 21/373 (5%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + Y +Q AEK  RL Q++    +PN   F SEP HYR RAEF +WH+GD   +IMFDQQ+
Sbjct: 8   ETYAEQFAEKTHRLEQLL--GDLPNFDAFASEPEHYRARAEFRVWHEGDQTDYIMFDQQS 65

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           KE++ I +       I  LM ++MA I   P+LR KLFQ+D+L + S + +VTLIY + L
Sbjct: 66  KEKVAIHHCPMALESIATLMPKLMAHIVQTPVLRQKLFQVDFLATLSGEMLVTLIYRKSL 125

Query: 128 ----------DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
                     D AW + A  LR  L        +IGRA K KICLD+DYV E+L V  +T
Sbjct: 126 QTKTETGVENDVAWVDAANALRCELPI----THIIGRARKQKICLDKDYVIEKLQVDHQT 181

Query: 178 LIYRQIENSFTQPNAGINVHMLEWV----LAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
            IY+QIENSFTQPNA +  +ML W       A    Q DL+ELYCGNG+FS+ L+  F R
Sbjct: 182 FIYQQIENSFTQPNAEMAQNMLHWARKVAAKANPDQQNDLIELYCGNGHFSIALSDQFHR 241

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VLA EI+K SV +A++NI AN V+NV +V+M+++E + A++ E  F RLKDID+ +Y F 
Sbjct: 242 VLATEISKTSVASAQFNIEANKVDNVTVVKMAAEEISAALQGET-FFRLKDIDLSAYAFN 300

Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
           TIFVDPPRSGLDD T  MV  + +I+YISCNP++L  DL  +  TH +   ALFDQFPYT
Sbjct: 301 TIFVDPPRSGLDDLTRQMVTEFDYIIYISCNPETLAHDLEAIRQTHEVLETALFDQFPYT 360

Query: 354 RHMECGVLLVRKP 366
            H+E GV L RKP
Sbjct: 361 HHIESGVFLKRKP 373


>gi|121624856|gb|ABM63534.1| BryS [Candidatus Endobugula sertula]
          Length = 365

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 170/362 (46%), Positives = 246/362 (67%), Gaps = 9/362 (2%)

Query: 8   DQYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           DQY+QQ   KV    D+L+Q+     V ++ ++ S   +YRMRAEF +WH G+  ++ M+
Sbjct: 9   DQYQQQPDNKVNIFKDQLKQLNHNMNVDHIAVYSSPNCYYRMRAEFKVWHTGNTSHYAMY 68

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           D+  KE + ++ F   +  IN LM  +MA I    +LR KLFQI++LT+Q++  +V+LIY
Sbjct: 69  DKNKKEPVFLEKFPVAAQSINQLMPLVMAEITQHEMLRKKLFQIEFLTTQTNDTLVSLIY 128

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L++ W      ++D L      I +IGR+ K K+ LDRD+V+E LTV G+   Y+Q 
Sbjct: 129 HKSLNEQWVHTISPIKDKL-----GINIIGRSRKQKMILDRDFVNEELTVNGKIFYYQQN 183

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           E SFTQPNA +   ML W +  +K   GDLLELYCGNGNF+L L+++F+RV+A E++K S
Sbjct: 184 EGSFTQPNAKVCEKMLAWAVNNSKNNHGDLLELYCGNGNFTLPLSQNFNRVIATEVSKSS 243

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V +A+ NI  N+++NV I+RMSS++F+ A+ + R F RLK  D+ SY F T+FVDPPR+G
Sbjct: 244 VHSAQKNIKKNNIDNVSILRMSSEDFSLAIDKIRPFRRLKKYDLESYHFSTVFVDPPRAG 303

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD T+ M++ + +I+YISCNP +L  +L  L  TH IE LA FDQFPYT H+E GV+L 
Sbjct: 304 LDDGTIEMIKRFENIIYISCNPKTLINNLDSLCRTHNIEALAAFDQFPYTEHLEAGVILK 363

Query: 364 RK 365
           +K
Sbjct: 364 KK 365


>gi|262278877|ref|ZP_06056662.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259228|gb|EEY77961.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 361

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 172/365 (47%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYHQQLQTKIDRITAQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM +++  ++ EP L ++LF+ D+L + S + +VTL
Sbjct: 61  NDDDKQKTVLRIDEFPIADQSINDLMPKLLEELKAEPKLSSRLFEADFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W + A  L     A K  I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLDQEWEQAAKAL-----AEKLDIKIMGRSRGQKIIIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L IL  TH I + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKILGLTHRITKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|225075787|ref|ZP_03718986.1| hypothetical protein NEIFLAOT_00803 [Neisseria flavescens
           NRL30031/H210]
 gi|224952869|gb|EEG34078.1| hypothetical protein NEIFLAOT_00803 [Neisseria flavescens
           NRL30031/H210]
          Length = 360

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/362 (46%), Positives = 245/362 (67%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+QQLA+K   L+Q+      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YQQQLADKKQYLQQLFQGLDCPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  +NALM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESVNALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L++AW++ A  L     A    I +IGR+   KI L +D+V E L V G+T  YRQIE 
Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFRYRQIEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W   A + +  DLLELYCGNGNF+L L++HF++VLA E++K SV 
Sbjct: 179 SFTQPNAQVCQKMLTWACDAAQNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN + N+KI R+S++EFT+A  + REF RL++  ID+ +Y F TIFVDPPR+G
Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ +V  + ++LYISCNP++L  +L  L  THTIER ALFDQFP+T H+E GV L 
Sbjct: 299 VDDETLKLVAQFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|319637755|ref|ZP_07992521.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa C102]
 gi|317400910|gb|EFV81565.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa C102]
          Length = 361

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/362 (46%), Positives = 244/362 (67%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+QQLA+K   L+Q+      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  INALM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L++AW++    L     A    I +IGR+   KI L +D+V E L V G+T  YRQIE 
Sbjct: 124 KLNEAWQQATQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFCYRQIEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W   A + +  DLLELYCGNGNF+L L++HF++VLA E++K SV 
Sbjct: 179 SFTQPNAQVCQKMLTWACNAAQNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN + N+KI R+S++EFT+A  + REF RL++  ID+ +Y F TIFVDPPR+G
Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ +V  + ++LYISCNP++L  +L  L  THTIER ALFDQFP+T H+E GV L 
Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|261399937|ref|ZP_05986062.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ATCC 23970]
 gi|269210388|gb|EEZ76843.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ATCC 23970]
          Length = 367

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/368 (47%), Positives = 241/368 (65%), Gaps = 11/368 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K DRL+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDRLKTLFAGLDVPEWEVYESLDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++   + +VT+I
Sbjct: 61  QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W    IR   AL  ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEW----IRAAQALQ-QQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVDPP
Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKEGGIALADYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D  T+ +V  + +I+YISCNP++L  +L  L+ THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLAQTHTVERAALFDQFPFTPHIESGV 355

Query: 361 LLVRKPSG 368
           LL +K  G
Sbjct: 356 LLKKKILG 363


>gi|241760255|ref|ZP_04758350.1| tRNA-methyltransferase [Neisseria flavescens SK114]
 gi|241319133|gb|EER55611.1| tRNA-methyltransferase [Neisseria flavescens SK114]
          Length = 360

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 170/362 (46%), Positives = 244/362 (67%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+QQLA+K   L+Q+      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  INALM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L++AW++ A  L     A    I +IGR+   KI L +D+V E L V G+T  YRQIE 
Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFRYRQIEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W   A + +  DLLELYCGNGNF+L L++HF +VLA E++K SV 
Sbjct: 179 SFTQPNAQVCQKMLTWACDAAQNLGKDLLELYCGNGNFTLPLSQHFTQVLATEVSKTSVN 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN + N+KI R+S++EFT+A  + REF RL++  ID+ +Y F TIFVDPPR+G
Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ +V  + ++LYISCNP++L  +L  L  THTIER ALFDQFP+T H+E GV L 
Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRTNLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|299770439|ref|YP_003732465.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. DR1]
 gi|298700527|gb|ADI91092.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. DR1]
          Length = 361

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 171/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYHQQLQTKIDRITAQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM +++  ++ EP L +++F+ D+L + S + +VTL
Sbjct: 61  NDDDKQKTVVRIDEFPIADQSINDLMPKLLEELKAEPKLSSRIFEADFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W + A  L     A K  I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLDQEWEQAAKAL-----AEKLDIKIMGRSRGQKIIIGNDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L IL  TH I + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKILGLTHRITKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|293608290|ref|ZP_06690593.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828863|gb|EFF87225.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 361

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 171/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K++R+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIERITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM +++  ++ EP L  +LF+ D+L + S + +VTL
Sbjct: 61  NDDDKQKTVVRIDEFPIADQSINDLMPKLLEELKAEPKLSNRLFEADFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W + A  L     A K  I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLDQEWEQAAKAL-----AYKLDIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q + HI+YISCNPD+L  +L  LS TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFEHIIYISCNPDTLYENLKTLSQTHRLTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|254785733|ref|YP_003073162.1| tRNA (uracil-5-)-methyltransferase [Teredinibacter turnerae T7901]
 gi|259547835|sp|C5BTY4|TRMA_TERTT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|237686461|gb|ACR13725.1| tRNA-methyltransferase [Teredinibacter turnerae T7901]
          Length = 364

 Score =  352 bits (902), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 177/366 (48%), Positives = 239/366 (65%), Gaps = 8/366 (2%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD---LY 59
           G+   + Y+ Q +EK++R R     F    +  FRS    YRMRAEF IWHD D     Y
Sbjct: 4   GSAPTETYDVQFSEKIERTRDQFKDFFNGEIDAFRSPASEYRMRAEFKIWHDKDTGRACY 63

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            +   +   + + I+ F  GS  I  LM +++A +    LL+ KLFQI++LT+ S  A+V
Sbjct: 64  AMHQPKVKNQVIPIEDFEIGSARIRELMPDVLAAVNNSTLLKQKLFQIEFLTATSGDAVV 123

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +LIYHR L + W+  A +L+  L     + QLIGR+ K KI L RDYV E L V  ++  
Sbjct: 124 SLIYHRPLSEQWQAEAEQLQSTL-----RCQLIGRSRKQKIALGRDYVLETLLVNDKSYT 178

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q+E  FTQPNA +   ML W    +  I GDLLELYCGNGNF+L LA++F RVLA E+
Sbjct: 179 YQQVETGFTQPNAAVCQKMLTWAQTVSADIGGDLLELYCGNGNFTLPLAQNFSRVLATEV 238

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV++A YNI  N   N+ I R+SS+EFT+AM + R F RL++ID+ SY+F TIFVDP
Sbjct: 239 SKTSVKSALYNIEQNGATNIAIARLSSEEFTEAMNKVRRFRRLENIDLDSYQFSTIFVDP 298

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD  TV +   + +I+YISCNPD+L  +L+ L+TTH + RLALFDQFPYT H ECG
Sbjct: 299 PRAGLDTDTVKLASRFDNIIYISCNPDTLADNLASLATTHEVTRLALFDQFPYTEHRECG 358

Query: 360 VLLVRK 365
           V+L R+
Sbjct: 359 VILRRR 364


>gi|254805435|ref|YP_003083656.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha14]
 gi|254668977|emb|CBA07299.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha14]
          Length = 362

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/365 (46%), Positives = 238/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W             ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A  R+REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|121635320|ref|YP_975565.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis FAM18]
 gi|262827905|sp|A1KV88|TRMA_NEIMF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262831406|sp|A9M1Q1|TRMA_NEIM0 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|120867026|emb|CAM10789.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis FAM18]
 gi|325132825|gb|EGC55505.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M6190]
 gi|325138728|gb|EGC61280.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ES14902]
 gi|325198777|gb|ADY94233.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis G2136]
          Length = 367

 Score =  350 bits (899), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 172/368 (46%), Positives = 241/368 (65%), Gaps = 11/368 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W + A         ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWMQAA-----QALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHTVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRKPSG 368
           LL +K  G
Sbjct: 356 LLKKKILG 363


>gi|325130700|gb|EGC53439.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           OX99.30304]
 gi|325136672|gb|EGC59272.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M0579]
 gi|325201664|gb|ADY97118.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           M01-240149]
 gi|325208601|gb|ADZ04053.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           NZ-05/33]
          Length = 362

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 169/365 (46%), Positives = 237/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL  K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A     P L+ + + +++L++ S + +VT+I
Sbjct: 61  QKASGASMIRCDRFEAASEAVNRLMPELIAAAAQSPELKKRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD  W             ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDAEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           S+ AA++NI AN + N+KI R+S++EFT+A  R+REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|213051818|ref|ZP_03344696.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 262

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 168/257 (65%), Positives = 201/257 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKI 261
            AA+YNIAANH++NV+I
Sbjct: 246 AAAQYNIAANHIDNVQI 262


>gi|325121978|gb|ADY81501.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 361

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K++R+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIERITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM +++  ++ EP L  +LF+ D+L + S + +VTL
Sbjct: 61  NDDDKQKTVVRIDEFPIADHSINDLMPKLLEELKAEPKLSNRLFEADFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W + A  L D L      I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLDQEWEQAAKALADKL-----DIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L  LS TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLSQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|169796179|ref|YP_001713972.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AYE]
 gi|262827608|sp|B0VCX5|TRMA_ACIBY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|169149106|emb|CAM86983.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AYE]
          Length = 361

 Score =  350 bits (898), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF++D+L + S + +VTL
Sbjct: 61  NGDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L     A K  I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQAAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL+  DIDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|169633681|ref|YP_001707417.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii SDF]
 gi|213157087|ref|YP_002319132.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB0057]
 gi|215483633|ref|YP_002325854.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|301348206|ref|ZP_07228947.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB056]
 gi|301510993|ref|ZP_07236230.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB058]
 gi|301597930|ref|ZP_07242938.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB059]
 gi|332850564|ref|ZP_08432840.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332865774|ref|ZP_08436569.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6013113]
 gi|262827573|sp|B7H3Q6|TRMA_ACIB3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262827592|sp|B7I4Y4|TRMA_ACIB5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262827605|sp|B0VR22|TRMA_ACIBS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|169152473|emb|CAP01441.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii]
 gi|213056247|gb|ACJ41149.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB0057]
 gi|213988998|gb|ACJ59297.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|332730626|gb|EGJ61940.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332735115|gb|EGJ66199.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6013113]
          Length = 361

 Score =  350 bits (897), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF++D+L + S + +VTL
Sbjct: 61  NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L     A K  I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQAAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL+  DIDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|261363848|ref|ZP_05976731.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
 gi|288568441|gb|EFC90001.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
          Length = 360

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 167/362 (46%), Positives = 242/362 (66%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y QQL +K+  L+Q+      P +Q+F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YTQQLDQKIQYLQQLFQGLDFPEIQVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  IN LM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINTLMPKLIEAATQNPELKKRWYAVEFLSALSSEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD+AW+  A  L     AR+  I +IGR+   KI L +DY+ E L V G+T  YRQ+E 
Sbjct: 124 KLDEAWQRAAETL-----ARELGIHIIGRSRGQKIVLTQDYITEELNVNGKTFRYRQVEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W     + + GDLLELYCGNGNF+L L++HF +VLA E++K SV 
Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQHFHQVLATEVSKTSVY 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN  +N+KI R+S++EFT+A  + R+F+RL++  + +  Y F TIFVDPPR+G
Sbjct: 239 AAQWNIEANQRDNIKIARLSAEEFTEAYTQSRKFHRLQEQGVSLKDYGFSTIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ +V  + +I+YISCNP++L  +L  L  THTIER ALFDQFP+T H+E GV L 
Sbjct: 299 VDDETLKLVSQFDNIIYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVYLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|85711838|ref|ZP_01042893.1| tRNA (uracil-5-)-methyltransferase [Idiomarina baltica OS145]
 gi|85694235|gb|EAQ32178.1| tRNA (uracil-5-)-methyltransferase [Idiomarina baltica OS145]
          Length = 368

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 169/362 (46%), Positives = 244/362 (67%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T+   +Y  Q AEK   L+Q++  +    L++  S   HYRMRAEF +WH+ +DLY+IMF
Sbjct: 5   TIDPSEYPLQFAEKAKHLQQLLSPYYKGELELHESPRTHYRMRAEFRVWHEQNDLYYIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           + +T+E++R+D F+PGS LIN LM  +   +  +P+LR KLFQ+D+LT+ +++A+++ +Y
Sbjct: 65  NPETREKIRMDEFVPGSGLINTLMKAVRDYVIDKPILRNKLFQVDFLTTTTNEAVISCLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LD  W E A ++ + L     ++ LIGRA K K  +  D V E L +  R     Q 
Sbjct: 125 HKQLDAEWEESAKQMHETLSPITDKLGLIGRARKQKHVIGTDEVVECLNIGNRHWKTVQT 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           EN+FTQPNA IN  M+ W + +    + DLLELYCGNGNF+L L+  F+ VLA EI+K S
Sbjct: 185 ENAFTQPNAEINKQMITWAINSVGTPKHDLLELYCGNGNFTLPLSTQFEHVLATEISKRS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V +A+     N +NNV+ VRMSS+EF++A++ + E  RL++ID+ SY F T+ VDPPR+G
Sbjct: 245 VASAQVATEMNGINNVEFVRMSSEEFSEALKGDVEKRRLQNIDLTSYDFGTVLVDPPRAG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD  T+ +V  Y  ILYISCNPD+L ++++ LS   T+ + ALFDQFPYT H+E GVLL 
Sbjct: 305 LDALTLNVVSQYQRILYISCNPDTLIQNINDLSDKFTVTKAALFDQFPYTHHIEAGVLLE 364

Query: 364 RK 365
           RK
Sbjct: 365 RK 366


>gi|296313486|ref|ZP_06863427.1| tRNA (uracil-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
 gi|296840005|gb|EFH23943.1| tRNA (uracil-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
          Length = 367

 Score =  349 bits (896), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 171/368 (46%), Positives = 239/368 (64%), Gaps = 11/368 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K DRL+ +      P  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDRLKTLFAGLDFPEWEVYESPDKHYRMRAEFRIWHEGSEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKASGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W + A         ++  I +IGR+   KI L +DY  E L V  R   YRQ
Sbjct: 121 YHKRLDNEWMQAA-----QALQQQLDISVIGRSRGQKIVLKQDYATETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKITRLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHTVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRKPSG 368
           LL +K  G
Sbjct: 356 LLKKKILG 363


>gi|308389801|gb|ADO32121.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           alpha710]
          Length = 362

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 169/365 (46%), Positives = 237/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W             ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           S+ AA++NI AN + N+KI R+S++EFT+A  R+REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|260555229|ref|ZP_05827450.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC
           19606]
 gi|260411771|gb|EEX05068.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC
           19606]
          Length = 361

 Score =  349 bits (895), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 170/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF++D+L + S + +VTL
Sbjct: 61  NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L     A K  I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQEAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL+  DIDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q++  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQSFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|319943226|ref|ZP_08017509.1| tRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319743768|gb|EFV96172.1| tRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 425

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 173/377 (45%), Positives = 245/377 (64%), Gaps = 21/377 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S T +   Y++QL  K + L+ +     +P +++F S P HYRMRAEF IWH+ D + + 
Sbjct: 41  SETSVAADYDRQLDAKHEALKALFAGLDIPAIEVFASAPQHYRMRAEFRIWHEDDAICYA 100

Query: 62  MFDQQTKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           MF    K       R++ F P    INALM  ++A    +P+LR + +Q+++L + S + 
Sbjct: 101 MFSPGQKASSATLQRVEQFAPACEAINALMPRLLAATSADPVLRRRWYQVEFLATLSGEM 160

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +VT++YHR LDDAW   A +L+  L      I +IGR+   K  L +D+V ERL + G  
Sbjct: 161 LVTMVYHRPLDDAWEAAARQLQATLG-----IHVIGRSRGQKRVLSQDFVTERLEIPGPA 215

Query: 178 ------LIYRQIENSFTQPNAGINVHMLEWVLAATK--GIQ--GDLLELYCGNGNFSLVL 227
                  +YRQ E +FTQPNA +   M+ W   A +  GI    DLLELYCGNGNF+L L
Sbjct: 216 GTPAAPFLYRQPEGAFTQPNARMCERMIGWACEAVQQAGISPASDLLELYCGNGNFTLPL 275

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--I 285
           +RHF +VLA E++K SV+AA++NI AN   NV+I R+S++E+TQAM+ ER F RL++  I
Sbjct: 276 SRHFRQVLATEVSKTSVQAAQWNIQANARPNVRIARLSAEEYTQAMQGERSFRRLREQEI 335

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
            +  + F T+ VDPPR+G+DDAT+ ++Q +P+I+YISCNP +LC +L  L  THTIER+A
Sbjct: 336 SLAEHDFSTVLVDPPRAGVDDATLALLQRFPNIVYISCNPHTLCANLDTLCQTHTIERMA 395

Query: 346 LFDQFPYTRHMECGVLL 362
           LFDQFP+T H ECGVLL
Sbjct: 396 LFDQFPFTPHTECGVLL 412


>gi|254671646|emb|CBA09369.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           alpha153]
          Length = 362

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 169/365 (46%), Positives = 237/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W             ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|254673083|emb|CBA07765.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           alpha275]
 gi|261392096|emb|CAX49593.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase; RUMT) [Neisseria
           meningitidis 8013]
 gi|325204641|gb|ADZ00095.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           M01-240355]
          Length = 362

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 169/365 (46%), Positives = 237/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W             ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|59801680|ref|YP_208392.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|194099095|ref|YP_002002180.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999401|ref|ZP_04719325.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|240014578|ref|ZP_04721491.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI18]
 gi|240017023|ref|ZP_04723563.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA6140]
 gi|240081341|ref|ZP_04725884.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19]
 gi|240113550|ref|ZP_04728040.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11]
 gi|240116100|ref|ZP_04730162.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18]
 gi|240118384|ref|ZP_04732446.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1]
 gi|240121100|ref|ZP_04734062.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID24-1]
 gi|240123929|ref|ZP_04736885.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332]
 gi|240126129|ref|ZP_04739015.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128606|ref|ZP_04741267.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254494120|ref|ZP_05107291.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 1291]
 gi|260440090|ref|ZP_05793906.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268595221|ref|ZP_06129388.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268597443|ref|ZP_06131610.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268599615|ref|ZP_06133782.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268601766|ref|ZP_06135933.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268604096|ref|ZP_06138263.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682554|ref|ZP_06149416.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268684715|ref|ZP_06151577.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686994|ref|ZP_06153856.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043378|ref|ZP_06569101.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|293398682|ref|ZP_06642860.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|75432439|sp|Q5F757|TRMA_NEIG1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262827706|sp|B4RN45|TRMA_NEIG2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|59718575|gb|AAW89980.1| putative tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           FA 1090]
 gi|193934385|gb|ACF30209.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513160|gb|EEH62505.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268548610|gb|EEZ44028.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268551231|gb|EEZ46250.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268583746|gb|EEZ48422.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268585897|gb|EEZ50573.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268588227|gb|EEZ52903.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622838|gb|EEZ55238.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268624999|gb|EEZ57399.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627278|gb|EEZ59678.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012984|gb|EFE04967.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|291611153|gb|EFF40250.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|317164649|gb|ADV08190.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 362

 Score =  348 bits (894), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 172/365 (47%), Positives = 240/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL  K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR   + +++L++ S + +VT+I
Sbjct: 61  QKASGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNHWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W + A  L+  L      I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWMKAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+R+F +VLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCRKMLEWACRAAEGLGGDLLELYCGNGNFTLPLSRYFRQVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANWIGNIKIARLSAEEFTEAYTGKREFTRLKESGIVLTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ THT+ R ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLTETHTVGRAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|239502231|ref|ZP_04661541.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB900]
          Length = 361

 Score =  348 bits (894), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF+ID+L + S + +VTL
Sbjct: 61  NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEIDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L     A K  I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQAAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL+  DIDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D+ T+ ++Q +  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDNETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|262831423|sp|A3M4W0|TRMA_ACIBT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|193077167|gb|ABO11954.2| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 361

 Score =  348 bits (893), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 169/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF++D+L + S + +VTL
Sbjct: 61  NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L     A K  I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQAAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEAYIDIQSYDFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|254448334|ref|ZP_05061795.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015]
 gi|198261947|gb|EDY86231.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015]
          Length = 364

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 177/367 (48%), Positives = 240/367 (65%), Gaps = 13/367 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD-- 64
           ++ Y QQL  K  RL Q++  FQ P L+++ S P++ R+RAEF IWH+G+D  + MF+  
Sbjct: 1   MNDYAQQLERKRQRLSQLLAPFQAPALEVYESAPLNCRLRAEFRIWHEGEDCCYAMFEPG 60

Query: 65  --QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
               +K  +RI+     S  IN LM  ++  ++ + L R +L+QI++L++ S   +VTLI
Sbjct: 61  QKASSKSLIRIEQLPIASRAINELMPPLLDALKSKELTRKRLYQIEFLSTLSGDMLVTLI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD WR  A +L++ L      I +IGR+ K K  L RDYV E+ TVA R   Y+Q
Sbjct: 121 YHKKLDDDWRTAAAQLQEQLG-----IAIIGRSRKQKCVLSRDYVLEQFTVAQRHYEYQQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQ--GDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +E  FTQPN  +   ML W     K +Q  GDLLELYCGNGNF+L L+RHF RVLA E+A
Sbjct: 176 LEGGFTQPNGAMCEIMLNWASDCAKTMQARGDLLELYCGNGNFTLPLSRHFRRVLATEVA 235

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVD 298
           K SV AA +NI  N  +N+ ++R+SS+E TQA+  EREF RL  K I++  Y F  +FVD
Sbjct: 236 KTSVYAAEWNIQRNACDNITVIRLSSEELTQALNGEREFRRLQQKAIELDQYDFDAVFVD 295

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPRSG+D  T  +   + HILYISCNP++L RDL++L  TH IER ALFDQFP T H+E 
Sbjct: 296 PPRSGMDVNTCQLTARFEHILYISCNPETLARDLALLCETHRIERAALFDQFPQTDHIEA 355

Query: 359 GVLLVRK 365
           GV L R+
Sbjct: 356 GVWLKRQ 362


>gi|309378436|emb|CBX22931.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 367

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 173/368 (47%), Positives = 238/368 (64%), Gaps = 11/368 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL  K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++   + +VT+I
Sbjct: 61  QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W    IR   AL  ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEW----IRAAQALQ-QQLDISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVDPP
Sbjct: 236 SVGAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKEGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D  T+ +V  + +I+YISCNP++L  +L  L  THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLVETHTVERAALFDQFPFTPHIESGV 355

Query: 361 LLVRKPSG 368
           LL +K  G
Sbjct: 356 LLKKKILG 363


>gi|294788983|ref|ZP_06754223.1| tRNA (uracil-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
 gi|294483085|gb|EFG30772.1| tRNA (uracil-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
          Length = 363

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 242/365 (66%), Gaps = 14/365 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y +QL +K + L + +  F  P LQ+F S   HYR RAEF IWH+GD + + MF    K 
Sbjct: 4   YNEQLQQKTNYLTEKLRPFHAPKLQVFPSAEQHYRQRAEFRIWHEGDAMSYAMFQAGQKA 63

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS--DQAIVTLIY 123
                +++D F   +  IN LM ++M  I   P+LR + +Q+++L + S   + +VTLIY
Sbjct: 64  SSASLIKLDNFPTAAHSINDLMPKLMHAISDCPVLRERWYQVEFLATLSVDSKILVTLIY 123

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LDDAW   A +L++ L+     I +IGR+   KI L +D+V E+LTV GR   YRQ+
Sbjct: 124 HKRLDDAWEAAARQLQNDLN-----IWIIGRSRGQKIVLTQDFVTEKLTVHGREFQYRQL 178

Query: 184 ENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           E  FTQPNA I   ML W   AA    Q DLLELYCGNGNF+L L++HF RVLA EI+K 
Sbjct: 179 EGGFTQPNAQICEKMLAWACNAAGNSKQFDLLELYCGNGNFTLPLSQHFRRVLATEISKT 238

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPP 300
           SV AA++NI+AN +NN++I R+S++E T+A    R F RL  + ID+  Y F TIF+DPP
Sbjct: 239 SVAAAQWNISANQINNIQIARLSAEELTEAFSGSRAFQRLTTQGIDLQHYDFSTIFIDPP 298

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+DD T+ +V  + HI+Y+SCNP++LC +L  L+  H I+ +ALFDQFP+T H+E GV
Sbjct: 299 RAGVDDETLKLVAKFEHIIYVSCNPETLCENLQYLTQMHKIQEVALFDQFPFTHHIETGV 358

Query: 361 LLVRK 365
           LL++K
Sbjct: 359 LLIKK 363


>gi|184157892|ref|YP_001846231.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ACICU]
 gi|332872728|ref|ZP_08440694.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6014059]
 gi|262827600|sp|B2HYZ7|TRMA_ACIBC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|183209486|gb|ACC56884.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Acinetobacter baumannii
           ACICU]
 gi|322508211|gb|ADX03665.1| trmA [Acinetobacter baumannii 1656-2]
 gi|323517837|gb|ADX92218.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332739025|gb|EGJ69886.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6014059]
          Length = 361

 Score =  347 bits (891), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 169/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYHQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF++D+L + S + +VTL
Sbjct: 61  NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L     A K  I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQEAKAL-----AEKLNIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL+  DIDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q++  I+YISCNP++L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQSFERIIYISCNPNTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|294669701|ref|ZP_06734768.1| hypothetical protein NEIELOOT_01602 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308614|gb|EFE49857.1| hypothetical protein NEIELOOT_01602 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 364

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 171/362 (47%), Positives = 241/362 (66%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--- 66
           Y QQL +K   LR++     +P  Q+F S   HYRMRAEF IWH+GD + + MF++    
Sbjct: 6   YLQQLDDKTALLRRLFSGIPMPEWQVFPSPEQHYRMRAEFRIWHEGDGISYAMFERGQKA 65

Query: 67  -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            T   +R+  F   S  IN LM  ++A +  +PLL+ +L+Q ++L++ S + +V+LIYHR
Sbjct: 66  GTASLIRLTDFPAASASINRLMPLLLAELSADPLLKNRLYQCEFLSTLSGEMLVSLIYHR 125

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDD W+  A+ L+     +K  I +IGR+   K+ L +D+V E LTV G T  YRQ E 
Sbjct: 126 KLDDGWKHAALALQ-----KKLGIFIIGRSKGQKLVLAQDFVTETLTVNGETFRYRQTEG 180

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            FTQPNA +   MLEW     +   GDLLELYCGNGNF+L L+R F RVLA E++K SV+
Sbjct: 181 GFTQPNAAVCEKMLEWTCDCAQTPNGDLLELYCGNGNFTLPLSRRFRRVLATEVSKTSVQ 240

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSG 303
           AA++NI+AN  +N++I R+S++EFT+A    REF RL  + ID+  Y F T+FVDPPR+G
Sbjct: 241 AAQWNISANGADNIRIARLSAEEFTEAFNGSREFRRLQKQQIDLAEYGFSTVFVDPPRAG 300

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ ++  +  I+YISCNP++L  +L  L  THT+ER ALFDQFP+T H+E G+LL 
Sbjct: 301 VDDDTLKLLARFDRIIYISCNPETLRANLDALLQTHTVERAALFDQFPFTGHIESGLLLH 360

Query: 364 RK 365
           +K
Sbjct: 361 KK 362


>gi|325205604|gb|ADZ01057.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           M04-240196]
          Length = 362

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/365 (46%), Positives = 235/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W             ++    +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWM-----QAAQALQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|325128707|gb|EGC51571.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis N1568]
 gi|325134787|gb|EGC57424.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M13399]
          Length = 362

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/365 (46%), Positives = 236/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W             ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           S+ AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|254480467|ref|ZP_05093714.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2148]
 gi|214039050|gb|EEB79710.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2148]
          Length = 371

 Score =  346 bits (888), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 169/364 (46%), Positives = 245/364 (67%), Gaps = 3/364 (0%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           ++ +QYE+ LA KV+R+ +++  + VP   IFRS    +RMRAEF +WH GD L ++MF 
Sbjct: 6   VIPEQYEELLAAKVERVSRLLDPYAVPEPSIFRSALTGFRMRAEFRMWHQGDALDYVMFR 65

Query: 65  QQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           +   K  + I  F      I  LM  ++  I+    LR KLFQ+++L++ + ++++TL+Y
Sbjct: 66  RDDPKTPVPIKTFPIACDSIQQLMPALLDIIKGNQELRRKLFQVEFLSTLAGESLITLVY 125

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR L+ +W   A +L D L     ++ LIGR+ K KI L +++V E L + G++  Y+Q 
Sbjct: 126 HRKLEPSWEAEAQKLHDDLSTLCPELSLIGRSRKQKIILGQEWVCETLDIEGQSFRYQQY 185

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           E +FTQPNA +N+ M+ W       + GDLLELYCGNGNF+L LA+ FD V+A E+AK S
Sbjct: 186 EQAFTQPNARVNIKMISWACEQALNLSGDLLELYCGNGNFTLPLAQRFDNVIATELAKVS 245

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPR 301
           V AAR N+  N V N +I+R++++E TQAM + REF RL+D+   +H Y  +T+FVDPPR
Sbjct: 246 VRAARNNLGMNAVRNTQIIRLAAEEVTQAMNQVREFRRLQDLSKPLHEYDLRTVFVDPPR 305

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GLD+ TV MV  +  I+YISCNP++L  +L++L  THT+E  ALFDQFPYT HMECGVL
Sbjct: 306 AGLDEQTVEMVSHFETIIYISCNPETLASNLAVLCNTHTVEMFALFDQFPYTDHMECGVL 365

Query: 362 LVRK 365
           L +K
Sbjct: 366 LKQK 369


>gi|325144927|gb|EGC67211.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           M01-240013]
          Length = 362

 Score =  345 bits (885), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 167/365 (45%), Positives = 234/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W             ++    +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWM-----QAAQALQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           S+ AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SISAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|332974198|gb|EGK11131.1| tRNA (uracil-5-)-methyltransferase [Kingella kingae ATCC 23330]
          Length = 359

 Score =  345 bits (884), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 166/362 (45%), Positives = 237/362 (65%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y  QL EK +RL   +  F   +L I  S    YRMRAEF IWH+G+++ + MF   +K 
Sbjct: 3   YLTQLQEKTERLHAQLAPFGASSLHIVPSAEQGYRMRAEFRIWHEGEEISYAMFQAGSKA 62

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +++  F      INALM  ++  I    +L+ +L+Q ++L + S + ++TLIYH+
Sbjct: 63  SSASLIKLQQFPAAYSSINALMPVLLQRIAGCSVLKTRLYQCEFLATLSGEMLITLIYHK 122

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDD W++ A  L+  L      + +IGR+   KI L +D+V ERL V G T  YRQ+E 
Sbjct: 123 KLDDEWQQAACTLQQELG-----VWIIGRSRGQKIVLQQDFVTERLNVHGETFQYRQLEG 177

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            FTQPNA +   MLEW     +G  GDLLELYCGNGNF+L L+RHF+RVLA E++K SV 
Sbjct: 178 GFTQPNAQVCEKMLEWACEQAQGAGGDLLELYCGNGNFTLPLSRHFNRVLATEVSKTSVA 237

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSG 303
           AA++NIAAN  +N++I R+S++EF+ A    REF RLK   I++  Y F TIF+DPPR+G
Sbjct: 238 AAQWNIAANRADNIRIARLSAEEFSAAFAGGREFTRLKQNGIELADYDFSTIFIDPPRAG 297

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD  + +V  +  I+Y+SCNPD+LC +L+ L+ THT++  ALFDQFP+T H+E GV+L+
Sbjct: 298 VDDEMLKLVAQFDRIIYVSCNPDTLCANLATLTQTHTLQSAALFDQFPFTHHIESGVILL 357

Query: 364 RK 365
           +K
Sbjct: 358 KK 359


>gi|325142850|gb|EGC65218.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           961-5945]
          Length = 362

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/365 (45%), Positives = 236/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W             ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCRKMLEWACRAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           S+ AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SISAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|218768699|ref|YP_002343211.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis Z2491]
 gi|304386842|ref|ZP_07369106.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|20178169|sp|Q9JT82|TRMA_NEIMA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|121052707|emb|CAM09050.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis Z2491]
 gi|304339096|gb|EFM05186.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|319410932|emb|CBY91327.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase; RUMT) [Neisseria
           meningitidis WUE 2594]
          Length = 362

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 168/365 (46%), Positives = 234/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W             ++    +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWM-----QAAQALQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFARLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHVVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|15677527|ref|NP_274683.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis MC58]
 gi|20178170|sp|Q9JYA0|TRMA_NEIMB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|7226932|gb|AAF42027.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis MC58]
 gi|316984826|gb|EFV63783.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis H44/76]
 gi|325140858|gb|EGC63368.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis CU385]
 gi|325199727|gb|ADY95182.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis H44/76]
          Length = 362

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 167/365 (45%), Positives = 236/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL  K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A     P L+ + + +++L++ S + +VT+I
Sbjct: 61  QKASGASMIRCDRFEAASEAVNRLMPELIAAAAQSPELKKRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD  W             ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDAEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW     +G+  DLLELYCGNGNF+L L+R+F +VLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACRTAEGLGSDLLELYCGNGNFTLPLSRYFRQVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|327483052|gb|AEA77459.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae LMA3894-4]
          Length = 282

 Score =  343 bits (880), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 160/278 (57%), Positives = 208/278 (74%), Gaps = 2/278 (0%)

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L + W   A  L+  L+   + +
Sbjct: 4   LMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWITAAQALKQRLNDEGFNL 63

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
            LIGRA K K+ LDRDYV E+L V G+  +Y+Q+EN FTQPNA +   MLEW +  T+  
Sbjct: 64  NLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENCFTQPNAKVAEKMLEWAVDCTQES 123

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++NIAAN + NV+I+RMS++EF
Sbjct: 124 KGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSAEEF 183

Query: 270 TQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327
           TQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  T  MVQ Y  ILYISCNP++
Sbjct: 184 TQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYISCNPET 243

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 244 LQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 281


>gi|90021263|ref|YP_527090.1| tRNA (uracil-5-)-methyltransferase [Saccharophagus degradans 2-40]
 gi|122996287|sp|Q21KA1|TRMA_SACD2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|89950863|gb|ABD80878.1| tRNA (uracil-5-)-methyltransferase [Saccharophagus degradans 2-40]
          Length = 365

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 164/358 (45%), Positives = 243/358 (67%), Gaps = 7/358 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTK 68
           Y+QQL +K    ++    F   ++++  S P HYRMRAEF +W  G + ++ M+   + K
Sbjct: 13  YQQQLDDKEKATKEQFSDFWQGDIEVHPSPPSHYRMRAEFKMWQQGAEAFYAMYQPGEYK 72

Query: 69  ERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           + + +++ F  G+  I  LM +++  +    LLR +LFQ+++LT+ + +++ TLIYH+ L
Sbjct: 73  KPVTLEWEFSVGAEKIVELMPKLLEIVNASELLRKRLFQVEFLTTTTGESVTTLIYHKPL 132

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
            + W+  A  L  +L+       +IGR+ K KI L +DYV+E LT++G    Y+QIE+ F
Sbjct: 133 TEEWQAEANALASSLNT-----HIIGRSKKQKIVLTQDYVEETLTISGTPFTYKQIESGF 187

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPNA +   ML+W + AT  + GDL+ELYCGNGNF+L L+++FD+VLA E++K SV+AA
Sbjct: 188 TQPNAAVCQKMLQWAVDATANLGGDLVELYCGNGNFTLPLSKNFDKVLATEVSKTSVKAA 247

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            YNI  N   N+ I RMSS+EFT+A+   REF RLKDI++ SY F T+FVDPPR+GLD+ 
Sbjct: 248 EYNIEKNGCKNITIARMSSEEFTEALNGVREFRRLKDIELDSYNFSTVFVDPPRAGLDED 307

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  ++  + +I+YISCNPD+L  +L+ L  TH +ER ALFDQFPYT H ECGV+L +K
Sbjct: 308 TEALISRFDNIIYISCNPDTLANNLANLCKTHKVERFALFDQFPYTDHRECGVILTKK 365


>gi|71907452|ref|YP_285039.1| tRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica RCB]
 gi|123627504|sp|Q47F12|TRMA_DECAR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|71847073|gb|AAZ46569.1| tRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica RCB]
          Length = 362

 Score =  342 bits (876), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 177/357 (49%), Positives = 230/357 (64%), Gaps = 6/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD-QQTK 68
           Y  QLA KV    Q    F V N  I  S P+HYRMRAEF IWH+GDDL + MFD    K
Sbjct: 11  YPTQLATKVAHFEQNFAPFGVANTAIHASAPLHYRMRAEFRIWHEGDDLNYAMFDPADPK 70

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           + + ++ F P +  I  LM  +   +R    LR +LFQ D+L + S + +VTLIYHR LD
Sbjct: 71  QPITLETFPPAAESICHLMPRLRDKLRGNESLRRRLFQADFLATLSGEMLVTLIYHRQLD 130

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +AW   A  +   L      I LIGR+   KI LDRD+V E   + GR L Y+Q+E SFT
Sbjct: 131 EAWEAAAREMAAEL-----GIGLIGRSRGQKIVLDRDWVLEGFELNGRQLRYKQVEGSFT 185

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN G+N  ML W      G  G+L+ELYCGNGNF++ L+  F+RVLA E++K SV AA+
Sbjct: 186 QPNGGVNRQMLGWACQQAAGFGGNLVELYCGNGNFTIALSPLFERVLATEVSKSSVHAAQ 245

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           YN+AAN V NV +VRMSS+EF+ A+    EF RLKDID+  +R  T+FVDPPRSGLD  T
Sbjct: 246 YNLAANQVENVALVRMSSEEFSNALAGREEFQRLKDIDLEPFRHATLFVDPPRSGLDAVT 305

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + + + +  ILYISCN ++L  ++  L  TH I+  A+FDQFPYT H+ECG+LL R+
Sbjct: 306 LELARGFDRILYISCNQETLRENVIALQDTHEIKASAVFDQFPYTHHLECGLLLTRR 362


>gi|217970373|ref|YP_002355607.1| tRNA (uracil-5-)-methyltransferase [Thauera sp. MZ1T]
 gi|217507700|gb|ACK54711.1| tRNA (uracil-5-)-methyltransferase [Thauera sp. MZ1T]
          Length = 368

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/364 (46%), Positives = 234/364 (64%), Gaps = 12/364 (3%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QT 67
           +YE QLA K+ R R     F +P   +FRS P+HYR+RAEF +WH  D + + MFD    
Sbjct: 10  RYEDQLAAKLARYRSDFAEFDLPEPAVFRSAPLHYRLRAEFRLWHHEDRIDYAMFDSADP 69

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K+ + ++ F   +  I  LM  +   ++    LR K+FQ+D+L + S + +V+L+YHR L
Sbjct: 70  KQPILLETFPAAAEPIAKLMPRLRDALQASEALRRKIFQVDFLATLSGECLVSLVYHRPL 129

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W   A        A    IQ+IGR+ K KI L+RD+V E L V G+ L Y+Q E SF
Sbjct: 130 DADWETAAR-----ALAAALDIQVIGRSRKQKIVLERDWVQEVLEVDGQRLRYQQFEGSF 184

Query: 188 TQPNAGINVHMLEWVLAATKGI------QGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           TQPN G+N HML W  A  K +       GDLLELYCGNGNF++ LA  F RVLA E++K
Sbjct: 185 TQPNGGVNQHMLAWARAQAKAVGARPQGPGDLLELYCGNGNFTVALAPLFGRVLATEMSK 244

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            SV AA  N+A N V NV +VRM+S+E + A+   RE+ R++ +D+  YRF T+FVDPPR
Sbjct: 245 TSVRAAHTNLADNGVANVTMVRMASEEISDALAGGREYRRMQGVDLAGYRFSTLFVDPPR 304

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GLD+ T+ + + + HILYISCNP++L  +++ L+TTH I   A FDQFPYT H+ECG+L
Sbjct: 305 AGLDEGTIALAKGFEHILYISCNPETLRANVAALATTHRIAAAAAFDQFPYTHHLECGLL 364

Query: 362 LVRK 365
           L R+
Sbjct: 365 LQRR 368


>gi|307545640|ref|YP_003898119.1| tRNA (uracil-5-)-methyltransferase [Halomonas elongata DSM 2581]
 gi|307217664|emb|CBV42934.1| tRNA (uracil-5-)-methyltransferase [Halomonas elongata DSM 2581]
          Length = 368

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 175/363 (48%), Positives = 239/363 (65%), Gaps = 11/363 (3%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF----D 64
           +Y++QL  K  RL +    F  P L+++ S P HYR R EF +WH+GDDL++ MF    D
Sbjct: 10  RYDEQLDAKRARLVETFAPFAPPALEVYPSPPSHYRQRCEFRLWHEGDDLFYAMFEVDPD 69

Query: 65  QQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           +  K+R+ R+D +      IN LM  ++  +R  P+LR KLFQ+++LT+ S +A+VTLIY
Sbjct: 70  EPGKKRVVRLDDYPVAGRRINELMPRLLDAVRDRPVLRHKLFQVEFLTTLSGEALVTLIY 129

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LD+ W E A  L  AL      I +IGRA K +  L RD+V E L V GR L Y+Q+
Sbjct: 130 HRQLDEDWDEAARELEQAL-----DIMIIGRARKQRRVLTRDHVWECLEVDGRRLHYQQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           ENSFTQPNA I   ML W    T G Q  DL+ELYCGN NF++ LA +F RVLA EI++ 
Sbjct: 185 ENSFTQPNAEICRAMLTWARDVTAGSQQRDLVELYCGNANFTVALADNFRRVLATEISRT 244

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV +AR N+ AN ++NV + RMS++EFTQA++ ++   R++   +  Y F T+ VDPPR+
Sbjct: 245 SVASARENLEANGIDNVTVGRMSAEEFTQALKGDKGGRRVEAWALDEYDFSTVLVDPPRA 304

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD+A+   +  Y  I+YISCNPD+L  +L  L+ TH + R ALFDQFP+T H ECGVLL
Sbjct: 305 GLDEASCRQLSEYERIVYISCNPDTLAHNLETLTQTHAVTRFALFDQFPWTHHCECGVLL 364

Query: 363 VRK 365
            R+
Sbjct: 365 ERR 367


>gi|262370456|ref|ZP_06063782.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter johnsonii SH046]
 gi|262314798|gb|EEY95839.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter johnsonii SH046]
          Length = 360

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 168/364 (46%), Positives = 242/364 (66%), Gaps = 10/364 (2%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +   Y+QQL  K++R+      F  P+L++F+S   H+RMRAEF IWH  DD+++ MF++
Sbjct: 1   MTSSYQQQLDAKIERITAQFAEFTPPSLEVFQSPEKHFRMRAEFRIWHTEDDMFYAMFER 60

Query: 66  ---QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
                K+ +RID F      IN LM  ++A ++   LL  +LF++ +L +   + +V+LI
Sbjct: 61  DEDNQKKVIRIDDFPIADASINQLMPVLLAELKSNDLLSKRLFEVHFLATLKGEMLVSLI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           Y   LD+ W+  A +L + L+     I+LIGR+   K+ L  ++V E L V  R   Y+Q
Sbjct: 121 YRCPLDEQWQVLAKQLSEKLN-----IKLIGRSRGQKVVLTDEFVVEELQVFERKYQYKQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE+SFTQPNA +   MLEW   A +    DLLELYCGNGNF+L L+  F+RVLA E+AK 
Sbjct: 176 IESSFTQPNAQVCQKMLEWACNAAQQSNKDLLELYCGNGNFTLPLSTRFNRVLATELAKS 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI  NH++N+++ R+S+++FTQA   EREF RL++  ID+ SY F T+FVDPP
Sbjct: 236 SVYAAQWNIEQNHIDNIQVARLSAEDFTQAYNGEREFRRLQEANIDMSSYEFDTVFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+DD T+ ++Q +  I+YISCNPD+L  +L  LS TH I + ALFDQFPYT H+E GV
Sbjct: 296 RAGIDDETLKLIQRFERIIYISCNPDTLHDNLKTLSQTHKISQFALFDQFPYTHHVESGV 355

Query: 361 LLVR 364
           LL +
Sbjct: 356 LLEK 359


>gi|262376153|ref|ZP_06069383.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter lwoffii SH145]
 gi|262308754|gb|EEY89887.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter lwoffii SH145]
          Length = 360

 Score =  338 bits (868), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 170/364 (46%), Positives = 237/364 (65%), Gaps = 10/364 (2%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +   Y+QQL  K++R+      +Q P L++F+S   ++RMRAEF IWH  DDL++ MF++
Sbjct: 1   MTSSYQQQLDAKIERISAQFAEYQPPALEVFQSPEKYFRMRAEFRIWHTEDDLFYAMFER 60

Query: 66  ---QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
                K+ +RID F      IN LM +++   + +  L  +LF++ +L + S Q +V+LI
Sbjct: 61  DENNNKKVIRIDEFPIADRSINDLMPQLLEAFKADANLGHRLFEVHFLATLSGQVLVSLI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD++W   A  L     A K  I+LIGR+   K  L  +YV E L+V  R   Y+Q
Sbjct: 121 YHRKLDESWEPAAKAL-----AEKLNIKLIGRSRGQKFVLTDEYVVEELSVFDRRYKYKQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE+SFTQPNA +   MLEW   A +    DLLELYCGNGNF+L L+  F RVLA E+AK 
Sbjct: 176 IESSFTQPNAQVCQKMLEWACDAAEQSDKDLLELYCGNGNFTLPLSTKFRRVLATELAKS 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA +NI  N + N+++ R+S++EFTQA   ER F RL++  IDI +Y F T+FVDPP
Sbjct: 236 SVYAAEWNIEQNQIENIQVARLSAEEFTQAYNGERVFRRLQEAQIDISTYDFDTVFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+DD T+ ++Q +  I+YISCNPD+L  +L  LS TH I + A+FDQFPYT H+E GV
Sbjct: 296 RAGIDDETLKLLQRFQRIIYISCNPDTLYDNLKQLSQTHRISKFAMFDQFPYTHHVETGV 355

Query: 361 LLVR 364
           LL +
Sbjct: 356 LLEK 359


>gi|146281305|ref|YP_001171458.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri A1501]
 gi|166988121|sp|A4VI15|TRMA_PSEU5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|145569510|gb|ABP78616.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri A1501]
          Length = 362

 Score =  338 bits (867), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 171/358 (47%), Positives = 234/358 (65%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QY  QLAEK  RL +++  F  P  ++F S   HYR+RAEF +W +G   ++ MF+Q  K
Sbjct: 10  QYAAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREGGQRHYAMFEQGDK 69

Query: 69  ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + ID F   S  IN LM ++ A  +   +L  KLFQ+++LT+ S  A++TL YHR L
Sbjct: 70  HKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAYHRPL 129

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D+AW+  A +L     A    + L+GR+   +I + RDYV+E+L VAGR+  YRQ E +F
Sbjct: 130 DEAWQAEAEQL-----AADLGVSLVGRSKGKRIVIGRDYVEEQLVVAGRSFRYRQPEGAF 184

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +   ML W   A      DLLELYCGNGNF+L LA    RVLA EI+K SV AA
Sbjct: 185 TQPNGEVCQKMLNWAHEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAA 244

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             NI  N ++N+++VR+S++E TQA+   R F RL  ID+ SY F ++FVDPPR+G+D  
Sbjct: 245 LANIEDNGLDNIELVRLSAEELTQALNEVRPFRRLAGIDLKSYSFGSVFVDPPRAGMDPD 304

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L ++++ L+ TH IER ALFDQFPYT HME GVLLVR+
Sbjct: 305 TCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLVRR 362


>gi|255319354|ref|ZP_05360571.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens
           SK82]
 gi|262379796|ref|ZP_06072952.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens
           SH164]
 gi|255303747|gb|EET82947.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens
           SK82]
 gi|262299253|gb|EEY87166.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens
           SH164]
          Length = 361

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/361 (46%), Positives = 236/361 (65%), Gaps = 11/361 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ---- 65
           Y+ QL  K+ R+      F  P L++F S   H+RMRAEF IWH   D+++ MF++    
Sbjct: 5   YQAQLEAKIQRISTQFAEFNPPALEVFGSPEQHFRMRAEFRIWHTDQDMFYAMFERNPED 64

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           Q K  +R+D F      IN LM  ++A ++ +PLL  +LF++D+L + S + +VTLIYHR
Sbjct: 65  QQKTVIRVDEFPIADHSINQLMPILLAELKADPLLEKRLFEVDFLATLSGEMLVTLIYHR 124

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD+ W + A  L     A K  I++IGR+   K+ L  D+V E L V  +   Y+QIE 
Sbjct: 125 KLDNEWEKAARTL-----AEKLNIKIIGRSRGQKLVLTDDFVVEELQVLEQKFKYKQIEG 179

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            FTQPNA +   MLEW   A +  Q  LLELYCGNGNF+L L+  F+RVLA E+AK SV 
Sbjct: 180 GFTQPNAIVCQKMLEWACKAAEASQKHLLELYCGNGNFTLPLSLKFERVLATELAKSSVY 239

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSG 303
           AA++NI  N ++N+++ R+S++EFTQA   EREF RL+  +IDI SY F T+FVDPPR+G
Sbjct: 240 AAQWNIEQNGIDNIQVARLSAEEFTQAFNGEREFRRLQEAEIDIQSYEFDTVFVDPPRAG 299

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D  T+ ++Q +  I+YISCNPD+L  +L IL  +H I + A+FDQFPYT H+E G+LL 
Sbjct: 300 IDLDTLKLLQRFDRIIYISCNPDTLHDNLKILLESHKILKFAMFDQFPYTHHVETGILLE 359

Query: 364 R 364
           +
Sbjct: 360 K 360


>gi|331005274|ref|ZP_08328666.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium
           IMCC1989]
 gi|330420951|gb|EGG95225.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium
           IMCC1989]
          Length = 384

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/366 (45%), Positives = 244/366 (66%), Gaps = 10/366 (2%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           ++  +QY+ QL  K+ RL+Q +    + + P +++F S   HYRMRAEF +WH+G+  ++
Sbjct: 24  SVFPEQYQAQLDTKITRLQQQLSEISSVEFPEIEVFESATEHYRMRAEFKVWHEGETSHY 83

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
            M D++TK+ + +  F   S  IN LM  ++A I    +LR KLFQI++LT+ ++  +VT
Sbjct: 84  AMSDKETKKPIFLTEFPVASQSINTLMPLLLAEINRCDVLRKKLFQIEFLTTLTEDMLVT 143

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
            IYH  L + W E    +++     ++ + +IGR+ K KI LDR YV+E L V  RT  Y
Sbjct: 144 FIYHHPLSEKWVEKITPIKE-----QFSLNIIGRSRKQKIVLDRAYVNEELEVNKRTYSY 198

Query: 181 RQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           +Q E SFTQPNA +   ML W +  +A+   + DLLELYCGNGNF+L LA++F +V+A E
Sbjct: 199 QQNEGSFTQPNAKVCEKMLSWAVKKSASAEPKKDLLELYCGNGNFTLPLAQNFRQVMATE 258

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV +A+ NI  N++ NV IVRMSS++F++AM + R F RLKDID+ SY F T+FVD
Sbjct: 259 ISKSSVYSAQENIRRNNIENVTIVRMSSEDFSEAMDKVRPFRRLKDIDLDSYDFSTVFVD 318

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ M+Q +  I+Y+SCNP +L  +L  L  TH++  LA FDQFPYT H+E 
Sbjct: 319 PPRAGLDQHTLQMIQKFDTIIYVSCNPTTLVENLHQLCKTHSVTDLAAFDQFPYTDHLES 378

Query: 359 GVLLVR 364
            V+L R
Sbjct: 379 AVILKR 384


>gi|254283016|ref|ZP_04957984.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR51-B]
 gi|219679219|gb|EED35568.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR51-B]
          Length = 366

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 166/360 (46%), Positives = 230/360 (63%), Gaps = 8/360 (2%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-Q 66
           D+Y+  L  KV  L    LA       +F S    +RMRAEF +WHD DDLY++MF    
Sbjct: 9   DRYQTLLDAKVKSLVPRFLALGASEPDVFTSPTTGFRMRAEFRVWHDDDDLYYVMFKPGD 68

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
            K  +RID+F      I  +M  ++  +R +PLLR KLFQ+++L + + + +VTL+YHR 
Sbjct: 69  GKAPVRIDHFPIACDTIQQIMPRLLTAVRNKPLLRRKLFQVEFLATTTGELLVTLVYHRP 128

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD  W+E A  LR+ L+     + LIGR+ K KI L RD+V+ERLTV  R   +RQ E +
Sbjct: 129 LDGQWQEAAEHLRNELN-----VSLIGRSRKQKIILGRDWVEERLTVDDRVYRFRQPEQA 183

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +N  M+ W       I GDLLELYCG GNF+L LA  FDRV+A E++KP+  A
Sbjct: 184 FTQPNARVNTAMITWAKTQCHDIDGDLLELYCGIGNFTLPLASEFDRVIATEMSKPATAA 243

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSGL 304
           A YN   N ++NV+  R+S+++ T A+R ER F RL  +   +  YR  T+ VDPPR+GL
Sbjct: 244 ANYNREVNGIDNVEFARLSAEDMTAALRGERLFRRLAHLHKPLSDYRLSTLLVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D AT  +   +  +LY+SCNP++L ++L +L+ TH I++ A+FDQFPYT H+EC VLL R
Sbjct: 304 DPATEALATGFDTVLYVSCNPETLLKNLDVLTATHAIKQFAVFDQFPYTHHLECAVLLKR 363


>gi|94500651|ref|ZP_01307181.1| tRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
 gi|94427206|gb|EAT12186.1| tRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
          Length = 361

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 169/358 (47%), Positives = 234/358 (65%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y  QL EKV R+ +   +F +PN+++F S P H+R RAEF +WHDGD  +H MF+   K
Sbjct: 8   EYSSQLNEKVTRIHKQFSSFAIPNIEVFESVPQHFRQRAEFRVWHDGDSCFHAMFEPGKK 67

Query: 69  -ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + ++I +F   S  I  LM +MM  I    LL+ KLFQI+YL + S   +VTLIYH+ +
Sbjct: 68  NDPIKIVHFDIASEAICELMPKMMERINDSHLLKHKLFQIEYLGTSSGDMLVTLIYHKPI 127

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
            + W E A  ++D L      I +IGRA K ++ LD+D+V E L V G+ + Y+Q+E SF
Sbjct: 128 TEEWIEKASAIKDEL-----GIHIIGRARKMRVPLDQDFVIETLEVDGKPIHYKQVEASF 182

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPNA IN  ML W          DLLELYCGNGNFSL LA  + RV+A EI+K SV+AA
Sbjct: 183 TQPNAYINQKMLSWARKQNCDSDRDLLELYCGNGNFSLALADRYRRVVATEISKTSVKAA 242

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
               A N+++NV   R+S++EFT+ M+  ++  RL+D+ + S  F T+ VDPPR+GLD+ 
Sbjct: 243 LDGKAMNNIDNVDFARVSAEEFTEHMKGGKQRRRLQDMGLESADFGTVLVDPPRAGLDED 302

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  ++  Y +I+YISCNPD+L  +L  LS TH IE  A+FDQFPYT H+ECGV L R+
Sbjct: 303 SCQLISEYDNIIYISCNPDTLQDNLEQLSKTHHIESFAVFDQFPYTHHIECGVYLTRR 360


>gi|90415962|ref|ZP_01223895.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2207]
 gi|90332336|gb|EAS47533.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2207]
          Length = 367

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 175/360 (48%), Positives = 230/360 (63%), Gaps = 9/360 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y   L  K++R    +     P +++F S    +RMRAEF IWH+    ++ M     K 
Sbjct: 11  YPAALNNKLERFYGTLDGLSFPEVEVFDSAASGFRMRAEFRIWHEDGVAHYAMNRPGEKR 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
              I  F     LI  LM  ++A+I     L  KLF +++LT+ S +A++TLIYHR +D+
Sbjct: 71  PYVISEFPIAGQLIGELMTPLLASINASTTLSRKLFSLEFLTTLSGEALITLIYHRPVDE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W+  A     AL A ++ I +IGR+ K K  L RDYV E LTV G    Y+QIE+ FTQ
Sbjct: 131 QWQLAA----KALEA-EHSIMVIGRSRKQKTVLTRDYVTECLTVDGVQYHYQQIESGFTQ 185

Query: 190 PNAGINVHMLEWVLAATKGI----QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           PNA +N  ML W     K I     GDL+ELYCGNGNF+ VLA+HF  VLA EI+K SV 
Sbjct: 186 PNAKVNEKMLSWASGCCKSIDDVASGDLVELYCGNGNFTAVLAQHFKSVLATEISKISVR 245

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           +A+ N A N VNNV +VRMSS+EFTQA+  ER F RLKDID++SY F TIFVDPPR+GLD
Sbjct: 246 SAQTNFALNDVNNVTVVRMSSEEFTQALNGERPFRRLKDIDLNSYGFSTIFVDPPRAGLD 305

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + T+ + Q + +ILYISCNP++L  +L  L+ TH I R A+FDQFP+T H+E GVLL R+
Sbjct: 306 EGTLQLAQRFDNILYISCNPETLRANLDSLTETHDIVRSAIFDQFPWTHHLESGVLLKRR 365


>gi|255065084|ref|ZP_05316939.1| tRNA (uracil-5-)-methyltransferase [Neisseria sicca ATCC 29256]
 gi|255050505|gb|EET45969.1| tRNA (uracil-5-)-methyltransferase [Neisseria sicca ATCC 29256]
          Length = 360

 Score =  336 bits (861), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 162/362 (44%), Positives = 238/362 (65%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y QQL +K+  L+Q+      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YTQQLDQKIQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  INALM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINALMPKLIEAAAQNPELKNRWYAVEFLSALSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L +AW+  A  L     AR+  I +IGR+   KI L +DY+ E L V G+T  YRQ+E 
Sbjct: 124 KLGEAWQRAAETL-----ARELGIHIIGRSRGQKIVLTQDYITEELNVNGKTFRYRQVEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W     + + GDLLELYCGNGNF+L L++HF +VLA E++K SV 
Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQHFRQVLATEVSKTSVY 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN  +N+KI R+S++EFT+A  + REF RL++  I +  Y F  IFVDPPR+G
Sbjct: 239 AAQWNIEANRRDNIKIARLSAEEFTEAYTQSREFRRLQEQGISLKDYGFSAIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+ T+ +V  + +I+YISCN ++L  +L  L  TH ++R ALFDQFP+T H+E GV L 
Sbjct: 299 VDEETLKLVSQFDNIIYISCNLETLRANLDTLCRTHAVKRAALFDQFPFTHHIESGVYLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|104783723|ref|YP_610221.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas entomophila L48]
 gi|122401746|sp|Q1I4J8|TRMA_PSEE4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|95112710|emb|CAK17438.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas entomophila L48]
          Length = 361

 Score =  336 bits (861), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 171/366 (46%), Positives = 231/366 (63%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS      QY+ QLA K  RLR+++  F  P   +F S   HYR+RAEF +W +G   ++
Sbjct: 1   MSAVFDPSQYDAQLAAKAARLRELLAPFGAPEPSVFDSPREHYRLRAEFRLWREGGQRHY 60

Query: 61  IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF    K + + ID F   S  IN LM  + A  +    L  +LFQ+++LT+ +  A+V
Sbjct: 61  AMFAPGEKHKAILIDDFPIASQRINELMPRLKAAWQGNEDLNNRLFQVEFLTTLAGDAMV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LD+AW   A +L     A +  + +IGR+   ++ + RDY  E L +AGRT  
Sbjct: 121 TLCYHRPLDEAWEAAAQQL-----ASELNVSVIGRSKGKRVVIGRDYAVENLDIAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLGWAFEAMGERDDDLLELYCGNGNFTLPLATRARQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA +N+  N V+NV++VR+S++E TQA+   R F RL+ ID+ SY F T+FVDP
Sbjct: 236 SKTSVNAALHNLDENGVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYDFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L ++++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|327479464|gb|AEA82774.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 362

 Score =  335 bits (860), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 170/358 (47%), Positives = 234/358 (65%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QY+ QLAEK  RL +++  F  P  ++F S   HYR+RAEF +W +    ++ MF+Q  K
Sbjct: 10  QYDAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREDGQRHYAMFEQGDK 69

Query: 69  ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + ID F   S  IN LM ++ A  +   +L  KLFQ+++LT+ S  A++TL YHR L
Sbjct: 70  HKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAYHRPL 129

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D+AW+  A +L     A    + L+GR+   +I + RDYV+E+L VAGR+  YRQ E +F
Sbjct: 130 DEAWQAEAEQL-----AADLGVSLVGRSKGKRIVIGRDYVEEQLVVAGRSFRYRQPEGAF 184

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +   ML W   A      DLLELYCGNGNF+L LA    RVLA EI+K SV AA
Sbjct: 185 TQPNGEVCQKMLNWTHEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAA 244

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             NI  N ++N+++VR+S++E TQA+   R F RL  ID+ SY F ++FVDPPR+G+D  
Sbjct: 245 LANIEDNGLDNIELVRLSAEELTQALNEVRPFRRLAGIDLKSYSFGSVFVDPPRAGMDPD 304

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L ++++ L+ TH IER ALFDQFPYT HME GVLLVR+
Sbjct: 305 TCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLVRR 362


>gi|298369430|ref|ZP_06980748.1| tRNA (uracil-5-)-methyltransferase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283433|gb|EFI24920.1| tRNA (uracil-5-)-methyltransferase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 362

 Score =  335 bits (860), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 162/362 (44%), Positives = 239/362 (66%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+QQL +K D L+++      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YQQQLRDKTDYLKKLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  INALM +++      P L+ + +  ++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINALMPKLIEAAAQNPELKNRWYAAEFLSALSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L +AW+  A      + AR+  I +IGR+   KI L + Y+ E L V G+T  YRQ+E 
Sbjct: 124 KLGEAWQRAA-----EILARELGIHIIGRSRGQKIVLTQGYITEELNVNGKTFRYRQVEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W     + + GDLLELYCGNGNF+L L+++F +VLA E++K SV 
Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQYFRQVLATEVSKTSVY 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN  +N+KI R+S++EFT+A  + REF RL++  I +  Y F  IFVDPPR+G
Sbjct: 239 AAQWNIEANQRDNIKIARLSAEEFTKAYTQSREFRRLQEQGILLKDYVFSAIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+ T+ +V  + +I+YISCNP++L  +L  L  THT++R ALFDQFP+T H+E GV L 
Sbjct: 299 VDEETLKLVSQFDNIIYISCNPETLRANLDTLCRTHTVKRAALFDQFPFTHHIESGVWLE 358

Query: 364 RK 365
           RK
Sbjct: 359 RK 360


>gi|170719970|ref|YP_001747658.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida W619]
 gi|226705984|sp|B1J3Q4|TRMA_PSEPW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|169757973|gb|ACA71289.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida W619]
          Length = 361

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 172/366 (46%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y+ QL  KV RLR+++  F  P   +F S   HYR+RAEF +W +    ++
Sbjct: 1   MSAAFDPSAYDAQLQAKVTRLRELLAPFGAPQPAVFDSPREHYRLRAEFRLWREDGQRHY 60

Query: 61  IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF    K + + ID F   S  INALM  + A  +    L  +LFQ+++LT+ +  A+V
Sbjct: 61  AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASDELSNRLFQVEFLTTLAGDAMV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LDDAW   A +L     A +  + LIGR+   ++ + RDY  E+L VAGR   
Sbjct: 121 TMCYHRPLDDAWEVAARQL-----AEELGVSLIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAYDAIGERDDDLLELYCGNGNFTLPLATRVRQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N++ N V+NV++VR+S++E TQA+   R F RL+ ID+ SY F T+FVDP
Sbjct: 236 SKTSVNAALSNLSENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYAFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L +++S L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNISQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|258545841|ref|ZP_05706075.1| tRNA (uracil-5-)-methyltransferase [Cardiobacterium hominis ATCC
           15826]
 gi|258518857|gb|EEV87716.1| tRNA (uracil-5-)-methyltransferase [Cardiobacterium hominis ATCC
           15826]
          Length = 354

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 169/358 (47%), Positives = 231/358 (64%), Gaps = 9/358 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL +K  RLR ++  F  P  +IF S P  YRMRAEF +WHDGD+ +  M     K 
Sbjct: 4   YQSQLDDKTRRLRALLAPFAAPEAEIFPSPPEGYRMRAEFRVWHDGDNCHFAMTGADGKP 63

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            +RID F P    IN LM  ++  +   P LR +LFQ ++ T+Q+ + +++LIYHR LDD
Sbjct: 64  -LRIDTFPPAHAAINRLMPRVITALHDRPALRHRLFQAEFQTTQAGETMLSLIYHRPLDD 122

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           AW+E A        A +  + LIGRA + K  + +D++ E   V GR   YRQ ENSF+Q
Sbjct: 123 AWQEAA-----EALAAERGVHLIGRARREKRIIGQDHITETFCVGGRDYHYRQYENSFSQ 177

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +  HML+W   A  G + DLLELYCGNGNF+L LA  + RVLA E++K  + A R 
Sbjct: 178 PNATVCQHMLDWA-TAQAGSRADLLELYCGNGNFTLPLAARYRRVLATEVSKNGIRALRA 236

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307
           N+A N + N+ + R+S++E  +A+R  R F RL+   ID+ +Y F T+FVDPPR+G+D A
Sbjct: 237 NLAENGIENIAVARLSAEELGEALRGVRPFRRLQQDGIDLATYDFDTVFVDPPRAGIDAA 296

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T+ ++  YP ILYISCNP++L  +L  LS TH I   ALFDQFP+T H+E GV+LVRK
Sbjct: 297 TLALIARYPRILYISCNPETLADNLHTLSQTHRIRACALFDQFPFTPHIESGVVLVRK 354


>gi|325272411|ref|ZP_08138803.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas sp. TJI-51]
 gi|324102452|gb|EGB99906.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas sp. TJI-51]
          Length = 361

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 170/366 (46%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y  QL  KV RLR+++  F  P   +F S   HYR+RAEF +W +    ++
Sbjct: 1   MSAAFDPSSYAIQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60

Query: 61  IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF    K + + ID F   SL IN LM  + A  +    L  +LFQ+++LT+ +  A++
Sbjct: 61  AMFAPGEKHKAILIDDFPIASLRINELMPRLKAAWQASEALGNRLFQVEFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LD+AW   A +L +AL      + +IGR+   ++ + RDY  E+L VAGR   
Sbjct: 121 TLCYHRPLDEAWEVAARQLSEAL-----SVSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAMGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N VNNV++VR+S++E TQA+   R F RL+ ID+ +Y F T+FVDP
Sbjct: 236 SKTSVNAALSNLDENAVNNVRLVRLSAEELTQALNEVRPFRRLEGIDLKAYDFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L ++++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|325266048|ref|ZP_08132734.1| tRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC
           33394]
 gi|324982686|gb|EGC18312.1| tRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC
           33394]
          Length = 391

 Score =  332 bits (850), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 166/366 (45%), Positives = 233/366 (63%), Gaps = 15/366 (4%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y  QL  K+ RL  ++  F  P +++F S    YRMRAEF IWH+G  + + MF+  +K 
Sbjct: 31  YNTQLNAKIQRLHTLLAPFGAPEIEVFASAEQGYRMRAEFRIWHEGGAMNYAMFEPGSKA 90

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +++  F P    INALM  ++  +  + + R +L+Q ++L + S + +VTLIYH+
Sbjct: 91  SSASLIKLAQFPPAHERINALMPRLLDALSQQDVFRHRLYQCEFLCTLSGEMLVTLIYHK 150

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDD W++ A  L+DAL      I +IGR+   KI L  DYV E LTV G+T  YRQ+E 
Sbjct: 151 RLDDEWQKAACTLQDALG-----ISIIGRSRGQKIVLREDYVTETLTVCGQTYRYRQLEG 205

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            FTQPNA +   MLEW  A  +        DLLELYCGNGNF+L L+R F RVLA E++K
Sbjct: 206 GFTQPNARVCEKMLEWACAQAEKAACTPPRDLLELYCGNGNFTLPLSRRFRRVLATEVSK 265

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDP 299
            SV AA++NI AN  +N+ I R+S++EFT+A    R+F RL  + I +  Y F TIF+DP
Sbjct: 266 TSVAAAQWNIQANGTDNIAIARLSAEEFTEAYTGARDFQRLTAQGIRLSDYDFSTIFIDP 325

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T+ +V  +  I+Y+SCNPD+L  +L  L+ THT++  ALFDQFP+T H+E G
Sbjct: 326 PRAGVDSETLKLVAQFESIIYVSCNPDTLADNLQTLTQTHTVQAAALFDQFPFTPHIESG 385

Query: 360 VLLVRK 365
           VLL +K
Sbjct: 386 VLLAKK 391


>gi|238020705|ref|ZP_04601131.1| hypothetical protein GCWU000324_00595 [Kingella oralis ATCC 51147]
 gi|237867685|gb|EEP68691.1| hypothetical protein GCWU000324_00595 [Kingella oralis ATCC 51147]
          Length = 361

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 172/364 (47%), Positives = 234/364 (64%), Gaps = 11/364 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y  QLAEK  RL  ++  F  P  Q+F S    YRMRAEF IWHD D + + MF    K 
Sbjct: 3   YTAQLAEKTQRLAALLAPFAAPAPQVFPSPESGYRMRAEFRIWHDSDQISYAMFAHGQKA 62

Query: 70  R----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +++ +F      INALM  ++  +   P L+ +L+Q ++L + S + +VTLIYHR
Sbjct: 63  SSASLIKLTHFQAVHSSINALMPRLLHRLSGCPALQTRLYQCEFLATLSGEMLVTLIYHR 122

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDD W+  A  L     AR   I +IGR+   KI L +D+V ERLTV G++  YRQ E 
Sbjct: 123 KLDDDWQVAARAL-----ARDLGIHIIGRSKGQKIVLSQDFVTERLTVNGQSYAYRQYEG 177

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W     +G  GDLLELYCGNGNF+L L+RHF RVLA E++K SV 
Sbjct: 178 SFTQPNAIVCQKMLAWACQQAQGAGGDLLELYCGNGNFTLPLSRHFRRVLATEVSKTSVA 237

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NIA N V+N++I R+S++EFT+A    R F RL +  I +  Y F TIF+DPPR+G
Sbjct: 238 AAQWNIAHNQVDNIQIARLSAEEFTEAFSGCRTFRRLAESGIALADYDFSTIFIDPPRAG 297

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+AT+ +V  +  I+Y+SCNP++L  +L  L+ TH I+  ALFDQFP+T H+E GV+L 
Sbjct: 298 VDNATLQLVARFDRIIYVSCNPETLAANLQTLTQTHRIQAAALFDQFPFTPHIESGVMLT 357

Query: 364 RKPS 367
           RK +
Sbjct: 358 RKAA 361


>gi|146305866|ref|YP_001186331.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina ymp]
 gi|166988119|sp|A4XQI3|TRMA_PSEMY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|145574067|gb|ABP83599.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina ymp]
          Length = 362

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 169/357 (47%), Positives = 227/357 (63%), Gaps = 6/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLAEK  RL +++  F  P  ++F S   HYR+RAEF +W +    ++ MF    K 
Sbjct: 11  YDAQLAEKQQRLIELLAPFAAPEPEVFDSPREHYRLRAEFRLWREDGQRHYAMFAPGDKH 70

Query: 70  R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             + +D F   SL IN LM  + A  R    L  KLFQ+++LT+ +  A++TL YHR LD
Sbjct: 71  TPILLDDFPIASLRINELMPRLRAAWRASEALSFKLFQVEFLTTLAGDALITLAYHRPLD 130

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +AW+  A +L     A +  + L+GR+   ++ + RDYV+E LTVAGR   YRQ E +FT
Sbjct: 131 EAWQAAAEKL-----ASELNVSLVGRSRGQRLVIGRDYVEEELTVAGRRFRYRQPEGAFT 185

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   ML W   A      DLLELYCGNGNF+L LA    RVLA EI+K SV AA 
Sbjct: 186 QPNGAVCEKMLGWAYEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAAL 245

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N+A N VNNV++VR+S++E TQA+   R F RL  ID+ SY F ++FVDPPR+G+D  T
Sbjct: 246 ANLADNGVNNVELVRLSAEELTQALNEVRPFRRLAGIDLKSYDFGSVFVDPPRAGMDPDT 305

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + + +  ILYISCNP++L  +++ LS TH + R ALFDQFPYT HME GVLL R+
Sbjct: 306 CELTRRFERILYISCNPETLAANIAQLSDTHQVTRCALFDQFPYTHHMEAGVLLERR 362


>gi|167035640|ref|YP_001670871.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida GB-1]
 gi|189036042|sp|B0KHR5|TRMA_PSEPG RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|166862128|gb|ABZ00536.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida GB-1]
          Length = 361

 Score =  330 bits (846), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/366 (46%), Positives = 229/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y  QL  KV RLR+++  F  P   +F S   HYR+RAEF +W +    ++
Sbjct: 1   MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60

Query: 61  IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF Q  K + + ID F   S  INALM  + A  +    L  +LFQ+++LT+ +  A++
Sbjct: 61  AMFAQGDKHKAILIDDFPIASQRINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LD+AW   A +L +AL      + +IGR+   ++ + RDY  E L VAGR   
Sbjct: 121 TMCYHRPLDEAWEVEARQLAEALG-----VSVIGRSKGKRLVIGRDYAIEELDVAGRVFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV++VR+S++E TQA+   R F RL+ ID+ SY F T+FVDP
Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYEFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|148549718|ref|YP_001269820.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida F1]
 gi|166988120|sp|A5W926|TRMA_PSEP1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|148513776|gb|ABQ80636.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida F1]
          Length = 361

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/366 (46%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y  QL  KV RLR+++  F  P   +F S   HYR+RAEF +W +    ++
Sbjct: 1   MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60

Query: 61  IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF    K + + ID F   S  INALM  + A  +    L  +LFQ+++LT+ +  A++
Sbjct: 61  AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LD+AW   A +L +AL      + +IGR+   ++ + RDY  E+L VAGR   
Sbjct: 121 TMCYHRPLDEAWEVEARQLAEALG-----VSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAMGDREDDLLELYCGNGNFTLPLATRVRQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV++VR+S++E TQA+   R F RL+ ID+ SY+F T+FVDP
Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|28871786|ref|NP_794405.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|50401547|sp|Q87WA0|TRMA_PSESM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|28855038|gb|AAO58100.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 361

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/358 (47%), Positives = 225/358 (62%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQT 67
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTARLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K  + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++T+ YHR L
Sbjct: 69  KTPILLEGLPIASQRINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           DD W   A +L     A +  + LIGR+   K+ +  DYV E+L VAGRT  YRQ E +F
Sbjct: 129 DDEWLAAAEQL-----AVELDVSLIGRSKGQKLIIGHDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL+ ID+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH IER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLYDTHRIERCALFDQFPYTHHMESGVLLVRR 361


>gi|26991338|ref|NP_746763.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida KT2440]
 gi|50401549|sp|Q88E14|TRMA_PSEPK RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|24986400|gb|AAN70227.1|AE016662_3 tRNA (uracil-5-)-methyltransferase [Pseudomonas putida KT2440]
 gi|313500558|gb|ADR61924.1| TrmA [Pseudomonas putida BIRD-1]
          Length = 361

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 169/366 (46%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y  QL  KV RLR+++  F  P   +F S   HYR+RAEF +W +    ++
Sbjct: 1   MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60

Query: 61  IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF    K + + ID F   S  INALM  + A  +    L  +LFQ+++LT+ +  A++
Sbjct: 61  AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LD+AW   A +L +AL      + +IGR+   ++ + RDY  E+L VAGR   
Sbjct: 121 TMCYHRPLDEAWEVEARQLAEALG-----VSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV++VR+S++E TQA+   R F RL+ ID+ SY+F T+FVDP
Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|119897603|ref|YP_932816.1| tRNA (uracil-5-)-methyltransferase [Azoarcus sp. BH72]
 gi|262827635|sp|A1K524|TRMA_AZOSB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|119670016|emb|CAL93929.1| tRNA (uracil-5-)-methyltransferase [Azoarcus sp. BH72]
          Length = 364

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 170/355 (47%), Positives = 230/355 (64%), Gaps = 6/355 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +YE QLA K+ R +       +P  ++FRSEP+HYR+RAEF IWH    L + MFD    
Sbjct: 10  EYETQLAAKIARFKSDFAPLDLPEPEVFRSEPLHYRLRAEFRIWHSEGRLDYAMFDPADP 69

Query: 69  ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +R + ID F   +  I A M  +   +     LR KLFQ+++L + S + +++L+YHR L
Sbjct: 70  KRPVLIDGFPAAAAPIAAAMPVLRERVMASEPLRRKLFQVEFLATLSGELMISLVYHRPL 129

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           +  W   A  L  A+      +QLIGR+ K KI L+RD+V E   + GRTL Y+QIE SF
Sbjct: 130 EADWEAAARELAAAM-----GVQLIGRSRKQKIVLERDWVLESFELDGRTLHYQQIEGSF 184

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           +QPN G+N  ML W     +G   DLLELYCGNGNF++ LA  F +VLA E++K SV AA
Sbjct: 185 SQPNGGVNRQMLVWARRQAEGSGADLLELYCGNGNFTVALAPLFGKVLATEMSKSSVRAA 244

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            YN+AAN V+NV +VRM+S+E + A+   R + R++ ID+  YRF T+FVDPPRSGLD+A
Sbjct: 245 HYNLAANAVDNVTMVRMASEEISDALAGGRAYRRMQGIDLAGYRFGTLFVDPPRSGLDEA 304

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           TV + + +  ILYISCNP +L  +++ L  TH I   A FDQFPYT H+ECGVLL
Sbjct: 305 TVALARRFDRILYISCNPQTLHDNIAALRDTHGIAAAAAFDQFPYTHHLECGVLL 359


>gi|225024625|ref|ZP_03713817.1| hypothetical protein EIKCOROL_01502 [Eikenella corrodens ATCC
           23834]
 gi|224942588|gb|EEG23797.1| hypothetical protein EIKCOROL_01502 [Eikenella corrodens ATCC
           23834]
          Length = 364

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 169/363 (46%), Positives = 241/363 (66%), Gaps = 11/363 (3%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y  QL +K   L+Q    F     Q+F S   HYRMRAEF +WHDGD++ + MF+   K
Sbjct: 7   EYTAQLQQKAGYLKQRFAEFSPSEWQVFASPEKHYRMRAEFRVWHDGDNISYAMFEPGQK 66

Query: 69  ERM----RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
                  RID     S  INA+M  ++A ++ +PLLR + +Q ++L++ S   +V +IYH
Sbjct: 67  AGSASLRRIDSLPAASAAINAVMPRLLAAVQADPLLRERWYQCEFLSTLSGDMLVGMIYH 126

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L   W+  A RL+     R+  I +IGR+   K+ L +D+V ERL   GR  +YRQ E
Sbjct: 127 KRLCGQWQAAAARLQ-----RELGIMIIGRSRGQKLVLAQDFVTERLHADGRDWLYRQYE 181

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F+QPNA +   ML+W   A  G+ GDLLELYCGNGNF+L LAR+F RVLA E++K SV
Sbjct: 182 GGFSQPNALVCQKMLDWACGAAAGLGGDLLELYCGNGNFTLPLARYFRRVLATELSKTSV 241

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRS 302
           +AA++NI AN V N+++ R+S++EFTQA    R F RL++  I++  Y F T+FVDPPR+
Sbjct: 242 QAAQWNIEANGVANIRLARLSAEEFTQAYHGVRTFRRLQEQGIELADYAFSTVFVDPPRA 301

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+DDAT+ ++Q + +I+Y+SCNP++L  +L+ L+ TH IER ALFDQFP+T H+E GVLL
Sbjct: 302 GIDDATLRLLQNFDNIIYVSCNPETLHANLTTLTQTHRIERAALFDQFPFTPHIESGVLL 361

Query: 363 VRK 365
            R+
Sbjct: 362 RRR 364


>gi|213966776|ref|ZP_03394927.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           T1]
 gi|301383285|ref|ZP_07231703.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062476|ref|ZP_07254017.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           K40]
 gi|302133458|ref|ZP_07259448.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213928626|gb|EEB62170.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           T1]
 gi|331018924|gb|EGH98980.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 361

 Score =  328 bits (841), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 168/358 (46%), Positives = 225/358 (62%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQT 67
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K  + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++T+ YHR L
Sbjct: 69  KTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           DD W   A +L     A +  + LIGR+   K+ +  DYV E+L VAGRT  YRQ E +F
Sbjct: 129 DDEWLAAAEQL-----AVELDVSLIGRSKGQKLIIGHDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL+ +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH IER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLYDTHRIERCALFDQFPYTHHMESGVLLVRR 361


>gi|92113465|ref|YP_573393.1| tRNA (uracil-5-)-methyltransferase [Chromohalobacter salexigens DSM
           3043]
 gi|91796555|gb|ABE58694.1| tRNA (uracil-5-)-methyltransferase [Chromohalobacter salexigens DSM
           3043]
          Length = 391

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/364 (46%), Positives = 234/364 (64%), Gaps = 11/364 (3%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF---- 63
           ++YE QL  K +R+      F  P L++F S P HYR R EF +WH+GDDL++ MF    
Sbjct: 27  ERYEAQLDAKRERVTAQFARFSPPALEVFPSPPSHYRQRCEFRLWHEGDDLFYAMFEVDP 86

Query: 64  -DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            D + KE +R+D +   S  INALM  +   +    +LR KLFQ+++LT+ S +A+VTLI
Sbjct: 87  SDPKRKEVIRLDDYPVASERINALMPALREALLASDVLRRKLFQVEFLTTLSGEALVTLI 146

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD AW + A  L+  L      + +IGRA K ++ LDRD+V ERL V GR  +Y+Q
Sbjct: 147 YHRQLDAAWEQEARALQTTLG-----VSIIGRARKQRLVLDRDHVWERLQVEGREFVYQQ 201

Query: 183 IENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           +ENSFTQPNA I   ML W    T+   +GDL+E YCGNGNF++ LA +F RV+A EI++
Sbjct: 202 VENSFTQPNAAICQSMLGWARDVTRESREGDLVEFYCGNGNFTVALAENFRRVVATEISR 261

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            SV +A  N+ AN V N  + RMS++EF+ A+  E+   R+  + +  + F T  VDPPR
Sbjct: 262 TSVASANVNLEANAVANAVVARMSAEEFSAALAGEKTGRRVAALALDEHTFTTALVDPPR 321

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GLD  +   ++ Y  I+YISCNPD+L  +L  LS TH + R ALFDQFPYT H ECGVL
Sbjct: 322 AGLDAHSCEQLKVYERIVYISCNPDTLEANLEQLSATHVVTRFALFDQFPYTDHCECGVL 381

Query: 362 LVRK 365
           L R+
Sbjct: 382 LERR 385


>gi|134035057|sp|Q1QXW4|TRMA_CHRSD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 373

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/364 (46%), Positives = 234/364 (64%), Gaps = 11/364 (3%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF---- 63
           ++YE QL  K +R+      F  P L++F S P HYR R EF +WH+GDDL++ MF    
Sbjct: 9   ERYEAQLDAKRERVTAQFARFSPPALEVFPSPPSHYRQRCEFRLWHEGDDLFYAMFEVDP 68

Query: 64  -DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            D + KE +R+D +   S  INALM  +   +    +LR KLFQ+++LT+ S +A+VTLI
Sbjct: 69  SDPKRKEVIRLDDYPVASERINALMPALREALLASDVLRRKLFQVEFLTTLSGEALVTLI 128

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD AW + A  L+  L      + +IGRA K ++ LDRD+V ERL V GR  +Y+Q
Sbjct: 129 YHRQLDAAWEQEARALQTTLG-----VSIIGRARKQRLVLDRDHVWERLQVEGREFVYQQ 183

Query: 183 IENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           +ENSFTQPNA I   ML W    T+   +GDL+E YCGNGNF++ LA +F RV+A EI++
Sbjct: 184 VENSFTQPNAAICQSMLGWARDVTRESREGDLVEFYCGNGNFTVALAENFRRVVATEISR 243

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            SV +A  N+ AN V N  + RMS++EF+ A+  E+   R+  + +  + F T  VDPPR
Sbjct: 244 TSVASANVNLEANAVANAVVARMSAEEFSAALAGEKTGRRVAALALDEHTFTTALVDPPR 303

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GLD  +   ++ Y  I+YISCNPD+L  +L  LS TH + R ALFDQFPYT H ECGVL
Sbjct: 304 AGLDAHSCEQLKVYERIVYISCNPDTLEANLEQLSATHVVTRFALFDQFPYTDHCECGVL 363

Query: 362 LVRK 365
           L R+
Sbjct: 364 LERR 367


>gi|88800040|ref|ZP_01115610.1| tRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297]
 gi|88777166|gb|EAR08371.1| tRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297]
          Length = 362

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 166/364 (45%), Positives = 237/364 (65%), Gaps = 15/364 (4%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQ 66
           DQY++QLA+K DRL+ ++ A+  P L IF S   HYRMRAEF  WH+G+  Y+ MF  + 
Sbjct: 8   DQYDRQLADKTDRLKVLLDAWDHPELNIFSSTSAHYRMRAEFRFWHEGERSYYAMFRPED 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
            +  + +  F   + L N LM ++   +  +P LR +LFQ+++LT+QS  A++TLIYHR 
Sbjct: 68  RRTPVEVVDFPVATELCNDLMTKVRNAVHEDPELRNRLFQVEFLTTQSGDALITLIYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           LD  W E          AR +Q Q    +IGRA K ++ LDRDYV E L++ GR   + Q
Sbjct: 128 LDSNWEE---------RARYWQEQWGYPVIGRARKLRLVLDRDYVTETLSILGRDFHFHQ 178

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            ENSFTQPNAG+   M++W +  ++G +  DLLELYCGNGNFS+ LA++F RVL  EI++
Sbjct: 179 YENSFTQPNAGVCEQMIQWAVEHSQGRESADLLELYCGNGNFSIPLAQNFRRVLGTEISR 238

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            SV++A+ NIA N V+NV I RM+S++ ++A        R ++  I  Y F TI VDPPR
Sbjct: 239 TSVKSAQENIALNQVDNVSIARMASEDLSKAWLHNEPNRRFREFRIDDYDFDTILVDPPR 298

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GLD+ TV +++ +  I+YISCNP+S+ +++  L   + +   ALFDQFPYT HME GV+
Sbjct: 299 AGLDEDTVELLKKFRRIIYISCNPESMVKNIEALRGQYRMTATALFDQFPYTHHMEAGVI 358

Query: 362 LVRK 365
           L R 
Sbjct: 359 LERN 362


>gi|330938145|gb|EGH41857.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 361

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/358 (46%), Positives = 222/358 (62%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 69  ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
               +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++TL YHR L
Sbjct: 69  RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W+    +L     A +  + LIGR+   K+ +  DYV E+L VAGRT  YRQ E +F
Sbjct: 129 DAEWQAAVEQL-----AAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLASRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361


>gi|330961636|gb|EGH61896.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 361

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/358 (46%), Positives = 225/358 (62%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQT 67
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF   + 
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGEN 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +  + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++T+ YHR L
Sbjct: 69  RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           DDAW+  A        A+   + LIGR+   K+ +  DYV E+L VA RT  YRQ E +F
Sbjct: 129 DDAWQAEA-----EALAQALDVSLIGRSKGQKLVIGHDYVTEKLDVASRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAYDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N VNNV +VR+S++E T+A+   R F RL+ +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVNNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYEFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361


>gi|146329832|ref|YP_001210047.1| tRNA (uracil-5-)-methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|262827669|sp|A5EXH9|TRMA_DICNV RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|146233302|gb|ABQ14280.1| tRNA (uracil-5)-methyltransferase [Dichelobacter nodosus VCS1703A]
          Length = 361

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 163/366 (44%), Positives = 233/366 (63%), Gaps = 10/366 (2%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           + +  Y++QL  K  +L  ++  F  P ++I+ S   HYRMRAEF IW D + L++ M  
Sbjct: 1   MTMSNYQRQLFAKHQQLHALLRPFSAPKIRIYPSPEKHYRMRAEFRIWRDDEQLFYAMSR 60

Query: 65  Q---QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
                 +  +R+  F P  + I+  M  ++  +R +P+L  KL+++ +L S   + +V+L
Sbjct: 61  GGALTAQNIVRLHNFPPAYITIDRCMPLLLDALRADPVLHHKLYEVHFLASLRGELLVSL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L D W   A  L     A+++ I LIGR+ K KI L+RD++ E L V GR   Y 
Sbjct: 121 IYHRALTDEWTAAAKAL-----AKRFHILLIGRSRKQKITLERDFILETLNVDGRAFHYH 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q E SF+QPNA +   ML W  A      GDLLELYCGNGNF+L LA HF RVLA EI+K
Sbjct: 176 QYEQSFSQPNAYVCQKMLRWACAQAGENAGDLLELYCGNGNFTLPLASHFRRVLATEISK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            S+ A + NI  N  NN+ + R+S++EFTQA ++ER+F RLK   I++  Y+F+T+FVDP
Sbjct: 236 SSITALQENIFLNQTNNIAVARLSAEEFTQAWQKERDFYRLKQAGIELADYQFETVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +P I+YISCNP +L  +L  L+ TH +   ALFDQFP T H+ECG
Sbjct: 296 PRAGIDDNTLFLLQKFPKIIYISCNPHTLAANLQTLTQTHELCAAALFDQFPDTPHIECG 355

Query: 360 VLLVRK 365
           V+L +K
Sbjct: 356 VVLRKK 361


>gi|237801466|ref|ZP_04589927.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024325|gb|EGI04382.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 361

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/366 (45%), Positives = 227/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS +     Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVSFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF     K  + ++     S  INALM  +         L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNKTPILLEGLPIASERINALMPVLRERWEASLTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LDD W   A  L     A++  + +IGR+   K+ +  DYV E+L VAGRT  
Sbjct: 121 TLCYHRPLDDQWMAEAETL-----AKELDVSVIGRSKGQKLIIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGEREDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RLK +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLKGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDADTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|289806801|ref|ZP_06537430.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 244

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 155/239 (64%), Positives = 184/239 (76%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPS 244


>gi|330873496|gb|EGH07645.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 361

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 165/358 (46%), Positives = 223/358 (62%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPKPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 69  ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
               +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++T+ YHR L
Sbjct: 69  RTPILLEGLPIASQRINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           +D W   A  L     A++  + LIGR+   ++ +  DYV E+L VAGRT  YRQ E +F
Sbjct: 129 NDEWLAEAEAL-----AKELDVSLIGRSRGQRLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL+ ID+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLL R+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLARR 361


>gi|307109771|gb|EFN58008.1| hypothetical protein CHLNCDRAFT_20361 [Chlorella variabilis]
          Length = 461

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 168/370 (45%), Positives = 234/370 (63%), Gaps = 20/370 (5%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF--DQQ 66
           QY+ QL  K  R+R +   F  P LQ FRS P HYRMRAEF +WH+GDDL++IM+  D +
Sbjct: 47  QYDSQLEAKEQRIRNLFAEFNPPPLQAFRSRPEHYRMRAEFRVWHEGDDLFYIMYEKDGE 106

Query: 67  TKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF---------QIDYLTSQSDQ 116
            K R +R+D F   S L+N LM  +   I+  P+LR KL          Q ++ T+ S Q
Sbjct: 107 GKNRDVRVDSFPVASELLNELMGLLRDHIKASPILRHKLGHQPRKVSLPQANFHTTLSGQ 166

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           ++V+LIYH+ L + W+E    LR  L    +     Q+IGR+   K+C+D D V E L+V
Sbjct: 167 SMVSLIYHKKLGEEWKE---ELRGVLAKAPSSTATPQIIGRSRGQKVCVDADEVQEVLSV 223

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARHFD 232
            G+ L   Q+E SF+QPN G+  HML W  +AT G   G+LLELYCGNGNF++ LA +F 
Sbjct: 224 DGQQLKQVQVEASFSQPNGGMCQHMLSWARSATAGSTGGELLELYCGNGNFTVALAPNF- 282

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           R  + +++K SV AA+ N   N V NV + RMSS+EFT A +  R+  RL+ +D+ S  F
Sbjct: 283 RKASSQVSKSSVAAAKRNFELNGVGNVFVARMSSEEFTAAWKEGRQMRRLEGLDLQSLSF 342

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
            T+ VDPPR+GLD  TV +++ +  ++YISCNPD+L  +L+ +     I+R A+FDQFPY
Sbjct: 343 TTLLVDPPRAGLDSQTVQLLKDFQSVVYISCNPDTLHANLAEVRDLFEIKRFAMFDQFPY 402

Query: 353 TRHMECGVLL 362
           T H+ECGV L
Sbjct: 403 THHVECGVYL 412


>gi|330501841|ref|YP_004378710.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina NK-01]
 gi|328916127|gb|AEB56958.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina NK-01]
          Length = 362

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 167/357 (46%), Positives = 227/357 (63%), Gaps = 6/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLAEK  RL +++  F  P  ++F S   HYRMRAEF +W +    ++ MF    K 
Sbjct: 11  YDAQLAEKKARLVELLAPFAAPEPEVFDSPREHYRMRAEFRLWREDGQRHYAMFAPGDKH 70

Query: 70  R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             + +D F   SL IN LM  + A  +    L  KLFQ+++LT+ +  A++TL YHR LD
Sbjct: 71  TPILLDDFPIASLRINELMPRLRAAWQASEALSFKLFQVEFLTTLAGDALITLAYHRPLD 130

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +AW+  A +L     A +  + L+GR+   ++ + RDYV+E L+VAGRT  YRQ E +FT
Sbjct: 131 EAWQAEAEKL-----AAELNVNLVGRSRGQRLVIGRDYVEEALSVAGRTFRYRQPEGAFT 185

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   ML W          DLLELYCGNGNF+L LA    RVLA EI+K SV AA 
Sbjct: 186 QPNGRVCEKMLGWAHDVLGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAAL 245

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N+A N V+NV++VR+S++E TQA+   R F RL  ID+ SY F ++FVDPPR+G+D  T
Sbjct: 246 ANLADNGVDNVELVRLSAEELTQALNEVRPFRRLAGIDLKSYDFGSVFVDPPRAGMDPDT 305

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + + +  ILYISCNP++L  +++ LS TH + R ALFDQFPYT HME GVLL R+
Sbjct: 306 CELTRRFQRILYISCNPETLAANIAQLSDTHKVTRSALFDQFPYTHHMEAGVLLERR 362


>gi|159462564|ref|XP_001689512.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii]
 gi|158283500|gb|EDP09250.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii]
          Length = 364

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 170/369 (46%), Positives = 234/369 (63%), Gaps = 21/369 (5%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + Y+ QL  K+ +L+Q+   F  P L++F S P HYRMR+EF +      L+      + 
Sbjct: 6   EDYDGQLDRKLTKLKQLFQEFDPPQLEVFTSPPTHYRMRSEFTVEQRDGPLHFKGGKPKG 65

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLE----PLLRAKLFQIDYLTSQSDQAIVTLIY 123
             R+R+D F   +  +N    E+MA +R E    P LR +LFQ+++ T+ +  A+VTL+Y
Sbjct: 66  PRRVRVDTFPVATKQVN----ELMAVVREEADKTPELRQRLFQVNFHTTLAGDAMVTLLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKY------QIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           HR L   W+  A RLRDAL A         +  +IGR+ K KI LD D+V ERLTV GRT
Sbjct: 122 HRKLGPEWQAAAERLRDALAATPTAAAAGVRPHVIGRSRKQKIALDADFVLERLTVGGRT 181

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
            + +Q+E SF+QPN  +  HML W          DLLELYCGNGNF++ L+ +F RV+A 
Sbjct: 182 FVQKQVEGSFSQPNGHVCQHMLTWAQ------DDDLLELYCGNGNFTIPLSANFRRVVAT 235

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID-IHSYRFKTIF 296
           E+AK SVEAARYN+ AN V+NV + RM+S+EF   MR      RL+ ++   + R +TI 
Sbjct: 236 EVAKSSVEAARYNMEANGVSNVFLARMASEEFAVTMRERGSRRRLEGLEGWEALRLRTIL 295

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           VDPPR+GLDD TV +++ +  I+YISCNPD+LC +L  ++ TH I R A FDQFPYT H+
Sbjct: 296 VDPPRAGLDDFTVELLKEFDRIVYISCNPDTLCANLKAIAPTHRIARFAAFDQFPYTHHL 355

Query: 357 ECGVLLVRK 365
           ECGV LVR+
Sbjct: 356 ECGVYLVRR 364


>gi|213028321|ref|ZP_03342768.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 205

 Score =  322 bits (825), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 145/204 (71%), Positives = 173/204 (84%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           LD+DY+DERL VAG+ +IYRQ+ENSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNG
Sbjct: 2   LDQDYIDERLPVAGKEIIYRQVENSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNG 61

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           NFSL LAR+F+RVLA EIAKPSV AA+YNIAANH++NV+I+RM+++EFTQAM   REFNR
Sbjct: 62  NFSLALARNFNRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 121

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341
           L+ ID+  Y+ +TIFVDPPRSGLD  T  MVQAYP ILYISCNP++LC++L  LS THT+
Sbjct: 122 LQGIDLKRYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTV 181

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
            RLALFDQFPYT HMECGVLL  +
Sbjct: 182 SRLALFDQFPYTHHMECGVLLTAR 205


>gi|330967678|gb|EGH67938.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 359

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 165/355 (46%), Positives = 222/355 (62%), Gaps = 6/355 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y++QL +K  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF      
Sbjct: 10  YDRQLEKKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDNR 69

Query: 70  RMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
              +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++T+ YHR LD
Sbjct: 70  TPILLEGLPIASQRINALMQVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W   A  L     A++  + LIGR+   ++ +  DYV E+L VAGRT  YRQ E +FT
Sbjct: 130 DEWLAEAEAL-----AKELDVSLIGRSRGQRLVIGHDYVTEKLDVAGRTFSYRQPEGAFT 184

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA 
Sbjct: 185 QPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 244

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N+  N V+NV +VR+S++E T+A+   R F RL+ ID+ SY F ++FVDPPR+G+D  T
Sbjct: 245 SNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDPPRAGMDPDT 304

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
             + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLV
Sbjct: 305 CELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLV 359


>gi|77461119|ref|YP_350626.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf0-1]
 gi|123603199|sp|Q3K6G9|TRMA_PSEPF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|77385122|gb|ABA76635.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 359

 Score =  320 bits (819), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 163/357 (45%), Positives = 223/357 (62%), Gaps = 6/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y  QL +KV RLR ++  F  P   +F S   ++R+RAEF +W +G + ++ MF Q  K 
Sbjct: 8   YAAQLEDKVTRLRDLLAPFDAPEPTVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDDKR 67

Query: 70  R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             + I+ F   SL IN LM ++ A  +    L  KLFQ+++LT+ +  A++TL YHR LD
Sbjct: 68  TPILIEEFPIASLRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPLD 127

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W   A +L     A    + +IGR+   +  L  DYV E+L V GRT  YRQ E +FT
Sbjct: 128 EHWHAAATKL-----ATDLGVSIIGRSKGKREVLGLDYVVEKLDVGGRTFSYRQPEGAFT 182

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV AA 
Sbjct: 183 QPNGTVNQKMLNWAYEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 242

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N+A N V+NV +VR+S++E T+A+   R F RL  ID+ SY F ++FVDPPR+G+D  T
Sbjct: 243 SNLAENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDT 302

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + + + +ILYISCNP++L  +++ L  TH I R ALFDQFP+T HME GVLL R+
Sbjct: 303 CELTRRFDNILYISCNPETLAANIAQLHDTHRITRCALFDQFPWTHHMESGVLLTRR 359


>gi|20178175|sp|Q9RHS9|TRMA_PSEFL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|6624218|dbj|BAA88495.1| (uracil-5-)methyltransferase [Pseudomonas fluorescens]
          Length = 363

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 161/357 (45%), Positives = 224/357 (62%), Gaps = 6/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y  QL +KV RLR ++  F  P  Q+F S   ++R+RAEF +W +G + ++ MF Q  K 
Sbjct: 12  YTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDDKR 71

Query: 70  R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             + I+ F   SL IN LM ++ A  +    L  KLFQ+++LT+ +  A++TL YHR LD
Sbjct: 72  TPILIEEFPIASLRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPLD 131

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W   A +L     A    + +IGR+   +  + RDYV E+L V GRT  YRQ E +FT
Sbjct: 132 EHWHTAANKL-----AADLNVSIIGRSKGKRDVIGRDYVVEKLDVGGRTFSYRQPEGAFT 186

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV AA 
Sbjct: 187 QPNGTVNQKMLNWAFEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 246

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N+  N V+NV +VR+S++E T+A+   R F RL  ID+ SY F ++FVDPPR+G+D  T
Sbjct: 247 SNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDT 306

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + + + +ILYISCNP++L  +++ L  TH I + A+FDQFP+T HME GVLL R+
Sbjct: 307 CELTRRFENILYISCNPETLAANIAQLHDTHRITQCAMFDQFPWTHHMESGVLLTRR 363


>gi|289675862|ref|ZP_06496752.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           syringae FF5]
          Length = 361

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 165/358 (46%), Positives = 223/358 (62%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQT 67
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF   + 
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGEN 68

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +  + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++TL YHR L
Sbjct: 69  RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W+  A        A +  + LIGR+   K+ +  DYV E+L VAGRT  YRQ E +F
Sbjct: 129 DAEWQAAA-----EQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361


>gi|126641572|ref|YP_001084556.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 322

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 155/326 (47%), Positives = 220/326 (67%), Gaps = 11/326 (3%)

Query: 45  MRAEFHIWHDGDDLYHIMF----DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           MRAEF IWH  +D+++ MF    D + K  +RID F      IN LM  ++A ++   LL
Sbjct: 1   MRAEFRIWHTENDMFYAMFERNDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLL 60

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
             +LF++D+L + S + +VTLIYHR L+  W + A  L     A K  I+++GR+   KI
Sbjct: 61  SQRLFEVDFLATLSGEMLVTLIYHRKLNQEWEQAAKAL-----AEKLNIKIMGRSRGQKI 115

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
            +  D+V E   +  R+  Y+QIE+SFTQPNA +   ML+W   A +G +  LLELYCGN
Sbjct: 116 VIGDDFVVEEFELLNRSFKYKQIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGN 175

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNF+L L+  F+RVLA E+AK SV AA++NI  N ++N+++ R+S++EFTQA + EREF 
Sbjct: 176 GNFTLPLSLKFERVLATELAKSSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFR 235

Query: 281 RLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT 338
           RL++  IDI SY F T+FVDPPR+G+DD T+ ++Q +  I+YISCNPD+L  +L  L+ T
Sbjct: 236 RLQEAYIDIQSYDFGTVFVDPPRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQT 295

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           H + + ALFDQFPYT H+E GVLL +
Sbjct: 296 HRVTKFALFDQFPYTHHVESGVLLEK 321


>gi|254457842|ref|ZP_05071269.1| tRNA (uracil-5-)-methyltransferase [Campylobacterales bacterium GD
           1]
 gi|207085235|gb|EDZ62520.1| tRNA (uracil-5-)-methyltransferase [Campylobacterales bacterium GD
           1]
          Length = 368

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 155/358 (43%), Positives = 233/358 (65%), Gaps = 6/358 (1%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + YE QL++K++  R     F   N+ +F+S   HYR R+EF IWH  D++++ M   + 
Sbjct: 17  NGYEGQLSDKLELNRDRFTPFYTKNISVFKSPDSHYRSRSEFKIWHIEDEIHYGMNHLEH 76

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K  + +D     +  I+ LM +++ +I+ + +   KLF  D+L+S   + +V+LIYHR L
Sbjct: 77  KGVVLVDDCPQVNAFIHTLMPKLLVSIKDKGIC-FKLFGADFLSSSRGEMVVSLIYHRKL 135

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W++ A  +     A++  I +IGR+ K K+ + +DY+ E L +  +   ++ IENSF
Sbjct: 136 DQEWQDKATEI-----AKELGIYIIGRSRKQKLVIGQDYITESLNIDEKIYRFKYIENSF 190

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN+ +N  M+ W L +     GDLLELYCG GNF++  A+ F++VLA EI+KPS+ AA
Sbjct: 191 TQPNSKVNEQMISWALKSLSDCGGDLLELYCGAGNFTIPFAKKFNKVLATEISKPSINAA 250

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + N+  N V N++ VRMS +EF QA+  E+EF R+ +IDI +Y   TIFVDPPRSG+DDA
Sbjct: 251 KENMLLNDVENIEFVRMSVEEFVQALDGEKEFRRMNEIDIDAYNINTIFVDPPRSGMDDA 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +      + +ILYISCNP++L RDL ILS TH +  +ALFDQFPYT H+E GV L+++
Sbjct: 311 SCRFASRHDNILYISCNPETLVRDLKILSETHDVVDMALFDQFPYTHHVEMGVKLIKR 368


>gi|330952946|gb|EGH53206.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae Cit 7]
          Length = 361

 Score =  318 bits (816), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 166/358 (46%), Positives = 221/358 (61%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 69  ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
               +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++TL YHR L
Sbjct: 69  RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W+  A        A +  + LIGR+   K+ +  DYV E+L VAGRT  YRQ E +F
Sbjct: 129 DAEWQAAA-----EQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPE 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361


>gi|330969518|gb|EGH69584.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 361

 Score =  318 bits (815), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 166/358 (46%), Positives = 221/358 (61%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 69  ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
               +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++TL YHR L
Sbjct: 69  RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W+  A        A +  + LIGR+   K+ +  DYV E+L VAGRT  YRQ E +F
Sbjct: 129 DAEWQAAA-----EQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361


>gi|71734845|ref|YP_276461.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482160|ref|ZP_05636201.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289625706|ref|ZP_06458660.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647718|ref|ZP_06479061.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|123635080|sp|Q48DT0|TRMA_PSE14 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|71555398|gb|AAZ34609.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|115265670|dbj|BAF32931.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           phaseolicola]
 gi|320322638|gb|EFW78731.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330577|gb|EFW86556.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330868981|gb|EGH03690.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330987567|gb|EGH85670.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011373|gb|EGH91429.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 361

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 165/358 (46%), Positives = 222/358 (62%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 69  ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
               +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++T+ YHR L
Sbjct: 69  RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W+  A        A +  + LIGR+   K+ + +DYV E+L VAGRT  YRQ E +F
Sbjct: 129 DAEWQAAA-----EQLAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361


>gi|330888777|gb|EGH21438.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 361

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/358 (46%), Positives = 222/358 (62%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 69  ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
               +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++T+ YHR L
Sbjct: 69  RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W+  A        A +  + LIGR+   K+ + +DYV E+L VAGRT  YRQ E +F
Sbjct: 129 DAEWQAAA-----EQLAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LNNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361


>gi|70732678|ref|YP_262441.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|123652774|sp|Q4K5P2|TRMA_PSEF5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|68346977|gb|AAY94583.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf-5]
          Length = 359

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/357 (44%), Positives = 226/357 (63%), Gaps = 6/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y  QL +KV RLR ++  F  P  Q+F S   ++R+RAEF +W +  + ++ MF Q  K 
Sbjct: 8   YTTQLNDKVARLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREAGERHYAMFSQDDKR 67

Query: 70  R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             + I+ F   S  IN LM  + A  +    L  KLFQ+++LT+ +  A++TL YHR LD
Sbjct: 68  TPILIEEFPIASQRINQLMPRLKAAWQASAPLSHKLFQVEFLTTLAGDAMITLCYHRPLD 127

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W + A +L     A   ++ +IGR+   +  + +DYV E+L V GRT  YRQ E +FT
Sbjct: 128 EHWHKAASQL-----AADLKVSVIGRSKGKREVIGQDYVVEKLEVGGRTFSYRQPEGAFT 182

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA 
Sbjct: 183 QPNGTVNQKMLNWAYEALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 242

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N++ N V+NV +VR+S++E T+A+   R F RL+ +D+ SY F ++FVDPPR+G+D  T
Sbjct: 243 SNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYEFGSVFVDPPRAGMDPDT 302

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + + + +ILYISCNP++L  +++ L  TH I R ALFDQFP+T HME GVLL R+
Sbjct: 303 CELTRRFDNILYISCNPETLAANIAQLHDTHRITRCALFDQFPWTHHMESGVLLTRR 359


>gi|302189046|ref|ZP_07265719.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           syringae 642]
          Length = 361

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/358 (46%), Positives = 221/358 (61%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 69  ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
               +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++T+ YHR L
Sbjct: 69  RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W+  A        A +  + LIGR+   K+ +  DYV E+L VAGRT  YRQ E +F
Sbjct: 129 DAEWQAAA-----EQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361


>gi|330811870|ref|YP_004356332.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379978|gb|AEA71328.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 359

 Score =  316 bits (810), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 161/357 (45%), Positives = 222/357 (62%), Gaps = 6/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y  QL  KV RLR ++  F  P   +F S   ++R+RAEF +W +  + ++ MF Q  K 
Sbjct: 8   YTAQLQGKVTRLRDLLAPFDAPEPAVFDSPLKNFRLRAEFRLWREAGERHYAMFSQDDKR 67

Query: 70  R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             + I+ F   SL IN LM ++ A  +    L  KLFQ+++LT+ +  A++TL YHR LD
Sbjct: 68  TPILIEEFPIASLRINQLMPQLKAAWQASAPLSHKLFQVEFLTTLAGDAMITLCYHRPLD 127

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W   A +L     A    + +IGR+   +  +  DYV E+L V GRT  YRQ E +FT
Sbjct: 128 EHWHAAASKL-----ATDLGVSIIGRSKGKREVIGHDYVVEKLEVGGRTFSYRQPEGAFT 182

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV AA 
Sbjct: 183 QPNGTVNQKMLNWAYDALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAAL 242

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N++ N V+NV +VR+S++E T+A+   R F RL  ID+ SY F ++FVDPPR+G+D  T
Sbjct: 243 SNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPDT 302

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + + + +ILYISCNPD+L  +++ L+ TH I R ALFDQFP+T HME GVLL R+
Sbjct: 303 CELTRRFDNILYISCNPDTLAANIAQLNDTHRITRCALFDQFPWTHHMESGVLLTRR 359


>gi|329895439|ref|ZP_08271020.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium
           IMCC3088]
 gi|328922322|gb|EGG29668.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium
           IMCC3088]
          Length = 365

 Score =  315 bits (808), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 164/361 (45%), Positives = 222/361 (61%), Gaps = 8/361 (2%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT- 67
           +Y+  L EK  R  ++   F      +  S    +RMRAEF IWHDGDDL++ MFD+   
Sbjct: 10  RYQALLNEKTRRCTELFAPFTDLQPSVHDSPQDAFRMRAEFRIWHDGDDLFYAMFDKDNP 69

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           KE +RID +  GS  I  LM  +   I  +P+LR +LFQI++LTS + +A+VTLIYH+ L
Sbjct: 70  KEPLRIDSYPFGSPTIQRLMPALRTAIIDKPVLRERLFQIEFLTSTTKEALVTLIYHKAL 129

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
            D W   A  L   L  R     +IGR+ K K+ L+   + E L +      YR  E  F
Sbjct: 130 SDDWEASARALAKTLDCR-----IIGRSRKQKVVLNGSSISETLNINHSNYHYRYYEQGF 184

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPNA IN+ M+EWV         DL+ELYCG GNF++ L++ F RVLA E+AK SV AA
Sbjct: 185 TQPNAAINIKMIEWVSQHFGDTSRDLIELYCGLGNFTVPLSQKFRRVLATEVAKSSVHAA 244

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSGLD 305
             NIA N++ N+ I R+++ E  QA+R ER F RL  +   +  Y F  I VDPPR+GLD
Sbjct: 245 HENIALNNIENIAIARLNAAETAQALRGERAFKRLAALPHALGEYDFAAILVDPPRAGLD 304

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ + Q+   I YISCNP++L RDL  L+ THTI+  A+FDQFPYT H ECGV+L ++
Sbjct: 305 EDSLRLAQSIDSIAYISCNPETLARDLEPLTQTHTIDAWAVFDQFPYTHHTECGVILSKR 364

Query: 366 P 366
           P
Sbjct: 365 P 365


>gi|254514426|ref|ZP_05126487.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR5-3]
 gi|219676669|gb|EED33034.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR5-3]
          Length = 366

 Score =  315 bits (806), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 159/361 (44%), Positives = 224/361 (62%), Gaps = 8/361 (2%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + YEQ  A+K  R+ + M    +P  Q F S    YR+RAEF IWHD DDL ++MFD ++
Sbjct: 11  ENYEQLFAQKCARVEKDMQFGSLPPAQRFSSPSQSYRVRAEFRIWHDEDDLNYVMFDPES 70

Query: 68  -KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
            +  + I  F+P    I  LM  +   ++L P LR KLFQ +++ + + + +VTLIYHR 
Sbjct: 71  PRTPVIIREFVPALEPIRQLMPRLREYLKLRPTLRRKLFQAEFMATTTGELLVTLIYHRA 130

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDDAW E A  L +A     + + L+GR+ K K  +  D+V +   V GR   YRQ E S
Sbjct: 131 LDDAWEEEATTLAEA-----FGVSLVGRSRKQKRVIGHDFVTDEFVVNGRIYSYRQYEQS 185

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F QPNA +N  ML W    +    GDLLELYCGNGNF+L LA  F +V+A E++K    A
Sbjct: 186 FVQPNAPVNQKMLNWAWEQSAHCGGDLLELYCGNGNFTLPLASQFPQVIATELSKSGTRA 245

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSGL 304
           A  N++ANH+ NV++VR+S++E +QAM   REF RL  +   +  Y  +T+FVDPPR+GL
Sbjct: 246 ALENLSANHIENVEVVRLSAEEVSQAMAGVREFRRLASLPKALGDYDLRTVFVDPPRAGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D AT+  V+ +  I+Y+SCN  +L  ++  L +TH++   ALFDQFPYT H+E  V+L R
Sbjct: 306 DPATLDCVRQFEAIIYVSCNLQTLKANIHALESTHSVASFALFDQFPYTHHIESAVVLRR 365

Query: 365 K 365
            
Sbjct: 366 S 366


>gi|313109698|ref|ZP_07795639.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 39016]
 gi|310882141|gb|EFQ40735.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 363

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 169/359 (47%), Positives = 229/359 (63%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQT 67
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W +   +  Y+ MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRYYAMFEQGD 70

Query: 68  KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           K   + I+ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L     A +  + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|291333829|gb|ADD93512.1| tRNA uracil 5 methyltransferase [uncultured marine bacterium
           MedDCM-OCT-S04-C13]
          Length = 365

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/361 (45%), Positives = 226/361 (62%), Gaps = 8/361 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +DQY+ QL +K+    Q+M      + +  ++ S    +RMRAEF +WH+   + + M  
Sbjct: 8   LDQYQSQLDKKLVNFYQIMAEAGVSIDSATVYPSPSSGFRMRAEFRLWHEHGRVNYAMNR 67

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
              K    I  F  G+ LIN LM  ++A +     L  K F  ++LT+ S +A++TLIYH
Sbjct: 68  PGEKRPYIIQDFPIGAPLINQLMPPLLAALNGNETLSRKCFSAEFLTTSSGEALITLIYH 127

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W   A  L+  L+       +IGR+ K K+ LD+DYV E L V  R   Y+Q+E
Sbjct: 128 RPLDEQWEVEARALQSELNT-----AIIGRSRKQKLVLDQDYVTEVLQVGDRQYSYQQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           + FTQPNA IN  ML W      G    DLLELYCGNGNF+  LARHF+ VLA EI+K S
Sbjct: 183 SGFTQPNATINSQMLNWASNCLAGSNKRDLLELYCGNGNFTAPLARHFNAVLATEISKVS 242

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V +A  N AAN ++N+++VR+S++E TQA+ ++R F RL  IDI SY F T+FVDPPR+G
Sbjct: 243 VNSALTNFAANQIDNIEVVRLSAEELTQALNKQRPFRRLAHIDIDSYDFSTVFVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD  T  +V  +  ILYISCNP++L ++L  +S TH IE  A+FDQFP+T H+E GVLL 
Sbjct: 303 LDADTEKLVCRFDRILYISCNPNTLAQNLVQISKTHRIEAAAVFDQFPWTAHLESGVLLS 362

Query: 364 R 364
           R
Sbjct: 363 R 363


>gi|66047514|ref|YP_237355.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500625|sp|Q4ZNF5|TRMA_PSEU2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|63258221|gb|AAY39317.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 361

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/358 (46%), Positives = 220/358 (61%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 69  ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
               +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++TL YHR L
Sbjct: 69  RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D        +   A  A +  + LIGR+   K+ +  DYV E+L VAGRT  YRQ E +F
Sbjct: 129 D-----AEWQAAAAQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361


>gi|254244378|ref|ZP_04937700.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 2192]
 gi|126197756|gb|EAZ61819.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 2192]
          Length = 363

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 170/359 (47%), Positives = 230/359 (64%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH-IMFDQQT 67
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W + G++  H  MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70

Query: 68  KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           K   + I+ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIENFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L     A +  + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|298488848|ref|ZP_07006874.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156648|gb|EFH97742.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 361

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 163/358 (45%), Positives = 221/358 (61%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QL EK  RLR+++  F  P  Q+F S   +YR+RAEF +W +    Y+ MF     
Sbjct: 9   SYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREYYRLRAEFRLWREDQKRYYAMFAPGDN 68

Query: 69  ERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
               +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++T+ YHR L
Sbjct: 69  RTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W+  A        A +  + LIGR+   K+ + +DYV E+L VAG T  YRQ E +F
Sbjct: 129 DAEWQAAA-----EQLAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGHTFSYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 184 TQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  
Sbjct: 244 LSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 304 TCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 361


>gi|107103819|ref|ZP_01367737.1| hypothetical protein PaerPA_01004890 [Pseudomonas aeruginosa PACS2]
 gi|218893815|ref|YP_002442684.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa LESB58]
 gi|254238543|ref|ZP_04931866.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa C3719]
 gi|226705983|sp|B7V1D2|TRMA_PSEA8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|126170474|gb|EAZ55985.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa C3719]
 gi|218774043|emb|CAW29859.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa LESB58]
          Length = 363

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 170/359 (47%), Positives = 230/359 (64%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH-IMFDQQT 67
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W + G++  H  MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70

Query: 68  KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           K   + I+ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L     A +  + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|116052866|ref|YP_793183.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|122257123|sp|Q02FV3|TRMA_PSEAB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|115588087|gb|ABJ14102.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 363

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 171/359 (47%), Positives = 229/359 (63%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH-IMFDQQT 67
           Y  QL +K  RL  ++  F  P  +IF S   HYR+RAEF +W + G++  H  MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEIFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70

Query: 68  KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           K   + I+ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L     A +  + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F  +FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGNVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|296391546|ref|ZP_06881021.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAb1]
          Length = 363

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 170/359 (47%), Positives = 230/359 (64%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH-IMFDQQT 67
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W + G++  H  MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70

Query: 68  KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           K   + I+ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L     A +  + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|312963175|ref|ZP_07777660.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6]
 gi|311282686|gb|EFQ61282.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6]
          Length = 359

 Score =  312 bits (800), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 159/358 (44%), Positives = 221/358 (61%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y  QL +KV RLR ++  F  P  Q+F S   H+R+RAEF +W +  + ++ MF Q  K
Sbjct: 7   RYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQHFRLRAEFRLWREAGERHYAMFSQDDK 66

Query: 69  ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
              + I+ F   S  IN LM ++ A  +    L  KLFQ+++LT+ +  A++TL YHR L
Sbjct: 67  RTPILIEEFPIASQRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPL 126

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D+ W   A +L     A    + +IGR+   +  +  DYV E+L V GRT  YRQ E +F
Sbjct: 127 DEHWHTAANKL-----AADLNVSIIGRSKGKRDVIGHDYVVEKLEVGGRTFSYRQPEGAF 181

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A      DLLELYCGNGNF+L LA     VLA EI+K SV AA
Sbjct: 182 TQPNGTVNQKMLNWAYEALGDRPDDLLELYCGNGNFTLPLATRVRNVLATEISKTSVNAA 241

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V+NV +VR+S++E T+A+   R F RL  ID+ SY F ++FVDPPR+G+D  
Sbjct: 242 LSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPD 301

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + + +ILYISCNP++L  +++ L  TH I + A+FDQFP+T HME GVLL R+
Sbjct: 302 TCELTRRFDNILYISCNPETLAANIAQLHDTHRITQCAMFDQFPWTHHMESGVLLTRR 359


>gi|15599914|ref|NP_253408.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|20178166|sp|Q9HV78|TRMA_PSEAE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|9950979|gb|AAG08106.1|AE004885_11 tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAO1]
          Length = 363

 Score =  312 bits (799), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 169/359 (47%), Positives = 230/359 (64%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH-IMFDQQT 67
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W + G++  H  MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70

Query: 68  KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           K   + ++ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILLEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L     A +  + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKL-----AAELGVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|229592733|ref|YP_002874852.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens SBW25]
 gi|262827930|sp|C3K2F6|TRMA_PSEFS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|229364599|emb|CAY52496.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens SBW25]
          Length = 359

 Score =  311 bits (798), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 158/358 (44%), Positives = 221/358 (61%), Gaps = 6/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y  QL +KV RLR ++  F  P  Q+F S   ++R+RAEF +W +G + ++ MF Q  K
Sbjct: 7   RYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDDK 66

Query: 69  ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
              + I+ F   S  IN LM ++ A  +    L  KLFQ+++LT+ +  A++TL YHR L
Sbjct: 67  RTPILIEEFPIASQRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPL 126

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D+ W   A +L     A    + +IGR+   +  +  DYV E+L V GRT  YRQ E +F
Sbjct: 127 DEHWHTAANKL-----ATDLNVSIIGRSKGKRDVIGHDYVVEKLEVGGRTFSYRQPEGAF 181

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV AA
Sbjct: 182 TQPNGTVNQKMLNWAYDALGDRPDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 241

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+  N V NV +VR+S++E T+A+   R F RL  ID+  Y F ++FVDPPR+G+D  
Sbjct: 242 LSNLDENAVGNVTLVRLSAEELTEALNEVRPFRRLHGIDLKRYEFSSVFVDPPRAGMDPD 301

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + + +ILYISCNP++L  +++ L  TH I + A+FDQFP+T HME GVLL R+
Sbjct: 302 TCELTRRFDNILYISCNPETLAANIAQLHDTHRITKCAMFDQFPWTHHMESGVLLTRR 359


>gi|119503351|ref|ZP_01625435.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2080]
 gi|119460997|gb|EAW42088.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2080]
          Length = 366

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/361 (44%), Positives = 224/361 (62%), Gaps = 8/361 (2%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           D YEQ LA K+  L         P   + +S P+ +R+RAEF IWHDGDDL++ MF   +
Sbjct: 9   DNYEQLLALKIAPLIDAFTELGAPAPVVVKSPPLAFRLRAEFRIWHDGDDLFYAMFRPGS 68

Query: 68  -KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
            K+ + ++ F   S  I  LM E++  +R    LR +LFQI++L++ +   +VTLIYHR 
Sbjct: 69  PKDPVAVERFPIASQAIQQLMPELLQGLRNNTQLRQRLFQIEFLSTLTGDMLVTLIYHRA 128

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDD+W   A  L     A+   I+LIGR+ K K  L+ D V E L +  +   ++Q + +
Sbjct: 129 LDDSWEIEAKEL-----AQHLGIKLIGRSRKQKKVLELDSVQETLCINDKQYHFKQPDQA 183

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  M+EW   A K +  DLLELYCG GNFSL LA  F+RVLA E++K ++ A
Sbjct: 184 FTQPNGHVNQRMIEWADRACKDLSADLLELYCGIGNFSLPLAHRFNRVLATEVSKAAIAA 243

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGL 304
           A  N   N +NNV+ +R+S++E T+AM   R F RL    + +  Y+  T+ VDPPR+GL
Sbjct: 244 AIENRKRNAINNVEFIRLSAQEMTEAMSGARPFRRLAHLPVPLTEYQLDTLLVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DDAT+ +   + +ILYISCNP +L  +L  L  TH I +LA FDQFPYT H+E GVLL R
Sbjct: 304 DDATLALASGFRNILYISCNPHTLLENLKALEPTHQITQLAFFDQFPYTHHLESGVLLTR 363

Query: 365 K 365
           +
Sbjct: 364 R 364


>gi|308801713|ref|XP_003078170.1| tRNA (ISS) [Ostreococcus tauri]
 gi|116056621|emb|CAL52910.1| tRNA (ISS) [Ostreococcus tauri]
          Length = 415

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 167/375 (44%), Positives = 228/375 (60%), Gaps = 25/375 (6%)

Query: 8   DQYEQQLAEKVDRLRQ-----MMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           + Y ++LAEK+   R        L  Q    +  R+E   +RMRAEF +WHDGD  Y+ M
Sbjct: 49  ESYSEELAEKIAIARSHFDDVCALPTQTETHESARTE---FRMRAEFKVWHDGDRSYYAM 105

Query: 63  FDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
            D  + KE + I  F   S  I  LM  ++  +     LR KLFQ ++LT+ +  A+V+L
Sbjct: 106 SDSDRPKEPVEIADFPMASKKIRELMPALLREVTKTETLRRKLFQANFLTTTTGDAVVSL 165

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YHR LDD W     R  +A+ AR   I +IGRA K K  L +D+V E++ V GR   Y+
Sbjct: 166 LYHRQLDDNWE----REAEAMRAR-LGIDIIGRARKQKKVLAKDFVTEKVVVDGREFSYK 220

Query: 182 QIENSFTQPNAGINVHMLEWV--LAATKGIQG---------DLLELYCGNGNFSLVLARH 230
           Q+E SFTQPNAGI   MLEW   +A      G         DLLELYCGNG+F++ LA  
Sbjct: 221 QLEGSFTQPNAGIAAQMLEWARSVATNDSPDGEGSVDVSTRDLLELYCGNGHFTIALAPL 280

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           F + LA EI+K SV AA+ N+AAN V+N+ I R+S++E + A+   RE+ RLKDI++ SY
Sbjct: 281 FRKCLATEISKSSVAAAQVNMAANGVDNLVIARLSAEELSDALNGGREYTRLKDINLASY 340

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
              TI VDPPR+G+ D        +  I+YISCNP++L RD  +LS TH ++R A+FDQF
Sbjct: 341 DLSTILVDPPRAGMGDEVSTFCAQFERIIYISCNPETLARDCRVLSKTHDVKRFAVFDQF 400

Query: 351 PYTRHMECGVLLVRK 365
           PYT H+E GVLL ++
Sbjct: 401 PYTPHLESGVLLKKR 415


>gi|152990451|ref|YP_001356173.1| tRNA (uracil-5-)-methyltransferase [Nitratiruptor sp. SB155-2]
 gi|262827911|sp|A6Q2V7|TRMA_NITSB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|151422312|dbj|BAF69816.1| tRNA (uracil-5-)-methyltransferase [Nitratiruptor sp. SB155-2]
          Length = 360

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 158/367 (43%), Positives = 240/367 (65%), Gaps = 21/367 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S +L    YE+QL +KV    ++         +IF S+   YR RAEF  + DG+   H 
Sbjct: 11  SCSLYEGGYEEQLQKKVHEFEKLFGL----EPEIFPSKQSRYRARAEFR-YIDGEYAMHR 65

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL----EPLLRAKLFQIDYLTSQSDQA 117
           + +   K  + ID       ++   + E+M+ +RL      +L  +L+++D+L+  S ++
Sbjct: 66  LHE---KGLVTID----ACEMVLESIYELMSKLRLLINKHEILSNRLYRVDFLSGLSGES 118

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +VT++YHR +D+AW + A  +  ALH     I ++GR+   KI + ++Y+ E+L V  + 
Sbjct: 119 LVTMVYHRPIDEAWEKAANEIAKALH-----IDIVGRSRGKKIVIGKEYITEKLPVFEKE 173

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
            ++R  E SFTQPN  +N+ M+EW     K +QGDLLELYCG GNF+L L+R+F++VLA 
Sbjct: 174 FLFRHYEGSFTQPNPYVNIKMIEWAGRIAKDLQGDLLELYCGAGNFTLPLSRYFEKVLAT 233

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+ K S++AA+ N+A N + NV+ VR+SS+E TQA+R  R+F RL++ID+HSY F+T+FV
Sbjct: 234 EVNKSSIKAAKENVALNGIENVEFVRLSSQEVTQALRGVRDFRRLENIDLHSYNFQTVFV 293

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPR GLDD T  +V+ + +I+YISCNP +L RDL  LS THT++++A+FDQFPYT H+E
Sbjct: 294 DPPRCGLDDDTRELVREFDNIVYISCNPQTLHRDLEELSKTHTVQKVAVFDQFPYTPHLE 353

Query: 358 CGVLLVR 364
            GV L R
Sbjct: 354 SGVYLTR 360


>gi|226942928|ref|YP_002798001.1| tRNA (uracil-5-)-methyltransferase [Azotobacter vinelandii DJ]
 gi|259547819|sp|C1DLS8|TRMA_AZOVD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226717855|gb|ACO77026.1| tRNA (uracil-5-)-methyltransferase [Azotobacter vinelandii DJ]
          Length = 361

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 160/358 (44%), Positives = 221/358 (61%), Gaps = 7/358 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y+ QLA+K  RL  ++  F  P  ++F S   HYR+RAEF +W +G+  ++ MFD   K
Sbjct: 10  HYDAQLADKQARLSGLLAPFAAPEPEVFDSPREHYRLRAEFRLWREGEARHYAMFDPGDK 69

Query: 69  ER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + +D F   S  IN LM  + A       L  KLFQ+++LT+ +  A++TL YHR L
Sbjct: 70  RKPILLDDFPIASERINDLMPRLKAAWE-NAALGFKLFQVEFLTTLAGDALITLCYHRPL 128

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W+  A RL     A +  + ++GR+   ++ + RDYV+E L VAGR   YRQ E +F
Sbjct: 129 DTFWQTAAERL-----AAELGVSIVGRSRGQRLVVGRDYVEEELEVAGRRFRYRQPEGAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +   ML W          DLLELYCGNGNF+L LA    RVLA EI+K SV AA
Sbjct: 184 TQPNGVVCRKMLNWAHDVLGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAA 243

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N+ +N V+NV +VR+S++E TQA+   R F RL  +D+  Y F ++FVDPPR+G+D  
Sbjct: 244 LTNLESNGVDNVTLVRLSAEELTQALNEVRPFRRLAGVDLKGYDFGSLFVDPPRAGMDPD 303

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  + + +  ILYISCNP++L  +++ L  TH + R ALFDQFPYT HME GVLL R+
Sbjct: 304 TCELARRFGRILYISCNPETLAANIARLHDTHRVVRCALFDQFPYTHHMESGVLLERR 361


>gi|313682239|ref|YP_004059977.1| tRNA (uracil-5-)-methyltransferase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155099|gb|ADR33777.1| tRNA (uracil-5-)-methyltransferase [Sulfuricurvum kujiense DSM
           16994]
          Length = 371

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 154/358 (43%), Positives = 219/358 (61%), Gaps = 6/358 (1%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           + YE QL  KV  ++++       N+ +  S    YR RAEF I+HD   + + M     
Sbjct: 17  EGYEGQLERKVSAVQELFFPLYSGNITVCPSPAERYRSRAEFKIYHDDGGISYAMNRLDR 76

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +  ++I+     S  I ++M +++  I  +  +  KLF +D+L S   +  ++++YH+ L
Sbjct: 77  QGALKIERCGIVSPSIASVMEKLLIEIS-DLGISHKLFGVDFLASGEGEITLSMLYHKAL 135

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           DD W+  A  L      ++  + +IGR+ K K+ L +DYV E L + GR   Y  IENSF
Sbjct: 136 DDEWKSKAHELE-----KRLGVYVIGRSRKQKVVLSQDYVTETLNIGGRMYRYIHIENSF 190

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  +N  M+ W L     I GDLLELYCG GNF++  A  FDRVLA EI+K S+ AA
Sbjct: 191 TQPNPRVNEQMITWSLGQIDKIGGDLLELYCGAGNFTIPFATKFDRVLATEISKASIHAA 250

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + N+A N V N++ VR+S++EFTQA+   REF RL+ +++  Y  KT+FVDPPR+GL + 
Sbjct: 251 KQNMALNGVGNIEFVRLSAEEFTQALDGVREFRRLEGLNVADYHLKTLFVDPPRAGLGEE 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
                  + HILYISCNP++L RDL ILS THTIE +A FDQFPYT H+E GV L +K
Sbjct: 311 PCAFASRFDHILYISCNPETLLRDLEILSRTHTIEAMAAFDQFPYTHHLEMGVKLTKK 368


>gi|78777216|ref|YP_393531.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
 gi|123550331|sp|Q30RT5|TRMA_SULDN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|78497756|gb|ABB44296.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
          Length = 369

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/357 (43%), Positives = 223/357 (62%), Gaps = 7/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YE QL++KV+  +++   F +  + +F S   +YR R+EF IWH+GD+  +   ++  K 
Sbjct: 19  YETQLSQKVELNKELFAPFYMGKISVFESPRSNYRSRSEFKIWHEGDEKINYAMNRADKG 78

Query: 70  R-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             + ID     S  I ALM +++  I+   +   KLF +D+L+S S + +V+L+YHR LD
Sbjct: 79  GVILIDECPQVSSAIFALMPKLLRAIKRHKI-DFKLFGVDFLSSNSGEIVVSLLYHRALD 137

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
             ++E A  + D L      I +IGR+   K+ + +DYV E L V G    +  IENSFT
Sbjct: 138 STFKEIAEIISDEL-----DIYIIGRSRGQKVVIKQDYVTEILHVDGVEFKFNYIENSFT 192

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N  M+ W L     +  DLLELYCG GNF++  A  + ++LA EI+K S+ AA+
Sbjct: 193 QPNAKVNEQMIGWALRELPNMDADLLELYCGAGNFTIPFASKYRKILATEISKSSINAAK 252

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N++ N V N+  VRM  +EF +A+   R FNR+K+IDI SY  KTIFVDPPRSG+D+AT
Sbjct: 253 SNMSLNKVKNISFVRMGVEEFVEALDGVRIFNRMKEIDIDSYEIKTIFVDPPRSGMDEAT 312

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
                 Y +I+YISCNP +L RDL +L+ TH +  +ALFDQFPYT H E G  LV+K
Sbjct: 313 CRFASRYENIIYISCNPQTLLRDLELLTKTHNVIDMALFDQFPYTHHAEMGAKLVKK 369


>gi|307721190|ref|YP_003892330.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas autotrophica DSM
           16294]
 gi|306979283|gb|ADN09318.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas autotrophica DSM
           16294]
          Length = 370

 Score =  301 bits (772), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 154/356 (43%), Positives = 221/356 (62%), Gaps = 6/356 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YE QL EK+   ++    +   ++ +++S   HYR R+EF IWH  DD+ + M     K 
Sbjct: 19  YEAQLNEKLQINKERFAPYFSGDISVYKSLDEHYRARSEFKIWHIDDDISYAMNHIDKKG 78

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            + ID     +  I ALM ++++ I++  +   KLF  D+L+S S + +V+L+YHR LD 
Sbjct: 79  VVLIDECPQVNEYIAALMPQLLSAIKVNDI-DFKLFGADFLSSSSGEIVVSLLYHRALDV 137

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W+E A ++     A+   I +IGR+ K K+ + +DY+ E L V      ++ IENSFTQ
Sbjct: 138 VWQEKAKKI-----AQDLNIYIIGRSRKQKVIIGQDYITETLHVNNDVYKFKYIENSFTQ 192

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +N  M+ W  A     Q DLLELYCG GNF++  A+ F++VLA EI+K S+ AA+ 
Sbjct: 193 PNPRVNEQMIAWAAAKFSDTQDDLLELYCGAGNFTIPFAKKFNKVLATEISKSSINAAKA 252

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N+  N V+N++ VRMS +EF  A+   REF R+KDIDI +Y   +IFVDPPRSG+ + + 
Sbjct: 253 NMHLNDVHNIEFVRMSVEEFVDALEGVREFRRMKDIDIKNYTINSIFVDPPRSGMGEYSC 312

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
                Y HI+YISCNP +L  DL IL  TH I  +ALFDQFPYT H+E GV L++K
Sbjct: 313 KFASRYNHIVYISCNPQTLLDDLDILCKTHDITDMALFDQFPYTHHVEMGVKLIKK 368


>gi|161870527|ref|YP_001599699.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis 053442]
 gi|161596080|gb|ABX73740.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis 053442]
          Length = 316

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 149/317 (47%), Positives = 208/317 (65%), Gaps = 11/317 (3%)

Query: 58  LYHIMFDQQTKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           +++ MF++  K      +R D F   S  +N LM E++A       LR + + +++L++ 
Sbjct: 1   MFYAMFEKGQKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTL 60

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           S + +VT+IYH+ LD+ W             ++  I +IGR+   KI L +DYV E L V
Sbjct: 61  SGEMLVTMIYHKRLDNEWM-----QAAQALQQQLDISVIGRSRGQKIVLKQDYVTETLKV 115

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
             R   YRQIE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+R
Sbjct: 116 GNRDFRYRQIEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFER 175

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYR 291
           VLA EI+K SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y 
Sbjct: 176 VLATEISKTSVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYA 235

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
           F TIFVDPPR+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ THT+ER ALFDQFP
Sbjct: 236 FSTIFVDPPRAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHTVERAALFDQFP 295

Query: 352 YTRHMECGVLLVRKPSG 368
           +T H+E GVLL +K  G
Sbjct: 296 FTHHIESGVLLKKKILG 312


>gi|157738407|ref|YP_001491091.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri RM4018]
 gi|172045655|sp|A8EWU8|TRMA_ARCB4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157700261|gb|ABV68421.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri RM4018]
          Length = 375

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/365 (40%), Positives = 227/365 (62%), Gaps = 9/365 (2%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIW-HDGDDLYH 60
           S TL    YE+QL  K+ R ++    F   +  I +S   ++R RAEF IW   G++   
Sbjct: 11  SCTLFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKE 70

Query: 61  IM---FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           I+    +   K  ++I+     S  I  LM +++  ++ +  L  KLF +++L S +   
Sbjct: 71  ILSYAMNDFKKNILKINSCEMVSFHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKDM 130

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +VTLIYH+ L+++W + A  +      +K  I++IGR+ K ++ L  DY++E L ++ + 
Sbjct: 131 LVTLIYHKKLEESWIQKAKEIE-----KKLNIKIIGRSKKQRLVLTNDYINETLNISNQN 185

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
             +   EN FTQPN  +NV M+EWVL  TK    DL ELYCG GNF++ L+  F +VLA 
Sbjct: 186 FFFAYEENGFTQPNTNVNVQMIEWVLENTKNSSKDLCELYCGGGNFTIPLSTKFRKVLAT 245

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI+K S+++A  N + N + ++  +RMS+++F QA+ + R FNRLKDI++  Y F TIF+
Sbjct: 246 EISKTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIFM 305

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPRSGLDD T  + + + +I+YISCNP++L RDL  L+ TH IE+ ALFDQF +T H+E
Sbjct: 306 DPPRSGLDDTTRNLAKDFENIIYISCNPETLHRDLEELTKTHEIEKFALFDQFAFTNHIE 365

Query: 358 CGVLL 362
            GV+L
Sbjct: 366 SGVIL 370


>gi|145344269|ref|XP_001416659.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576885|gb|ABO94952.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 418

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 160/373 (42%), Positives = 222/373 (59%), Gaps = 21/373 (5%)

Query: 9   QYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ- 65
            Y+++L EK    R     +A      + F S    +RMRAEF +WHDGD  Y  M D  
Sbjct: 50  SYDEELREKTAHARAHFDGVATLPSRTETFESAREEFRMRAEFKVWHDGDRSYFAMCDSD 109

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + K+ + +  F   S  I  LM E++  +     LR KLFQ ++LT+ +  A+V+L+YHR
Sbjct: 110 RPKDPVEVVDFPMASARIRELMPELLREVTATETLRRKLFQANFLTTTTGDAVVSLLYHR 169

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD+ W     R  +A+ AR   I +IGRA K K+ L +D+V E++ + G+   Y+Q+E 
Sbjct: 170 QLDEDWE----REAEAMRAR-LGIDVIGRARKQKLVLAKDFVTEKVLIDGKEFSYKQLEG 224

Query: 186 SFTQPNAGINVHMLEW------------VLAAT-KGIQGDLLELYCGNGNFSLVLARHFD 232
           SFTQPNAGI   ML W            V AAT +    D LELYCGNG+F++ LA  F 
Sbjct: 225 SFTQPNAGIAAQMLAWARSAAVSDSPDVVAAATPRDANRDFLELYCGNGHFTIALAPLFR 284

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           + LA EI+K SV AA  N+AAN ++NV   R+S++E   A+   RE+ RLKDID+ +Y  
Sbjct: 285 KCLATEISKSSVAAAHVNMAANGIDNVVTARLSAEELCDALDGGREYTRLKDIDLTTYDL 344

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
            T+ VDPPR+G+ D        +  I+YISCNP++L RD  IL  TH I+R A+FDQFPY
Sbjct: 345 STVLVDPPRAGMGDEVSKFCARFDRIIYISCNPETLARDCKILGETHEIKRFAVFDQFPY 404

Query: 353 TRHMECGVLLVRK 365
           T H+E G LLV++
Sbjct: 405 TPHLESGALLVKR 417


>gi|330895517|gb|EGH27828.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 333

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 157/336 (46%), Positives = 207/336 (61%), Gaps = 6/336 (1%)

Query: 31  PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP-GSLLINALMIE 89
           P  Q+F S   HYR+RAEF +W +    Y+ MF         +   +P  S  INALM  
Sbjct: 3   PEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDNRTPILLEGLPIASERINALMPV 62

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           +       P L  KLFQ+D+LT+ +  A++TL YHR LD  W+  A        A +  +
Sbjct: 63  LRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPLDAEWQAAA-----EQLAAELDV 117

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
            LIGR+   K+ +  DYV E+L VAGRT  YRQ E +FTQPN  +N  ML W   A    
Sbjct: 118 SLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAFTQPNGTVNGKMLNWAFDALGER 177

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA  N+  N V+NV +VR+S++E 
Sbjct: 178 QDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLDENGVDNVTLVRLSAEEL 237

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
           T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  T  + + +  ILYISCNP++L 
Sbjct: 238 TEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPDTCELTRRFERILYISCNPETLA 297

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 298 ANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 333


>gi|260899154|ref|ZP_05907549.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ4037]
 gi|308107497|gb|EFO45037.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ4037]
          Length = 229

 Score =  298 bits (763), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 140/226 (61%), Positives = 174/226 (76%), Gaps = 2/226 (0%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFTQPN  +   MLEW
Sbjct: 3   LNDEGFNLNIIGRARKMKIILDRDYVIEKLDVNGQSYIYQQVENSFTQPNGKVAEKMLEW 62

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A+YNIAAN ++NV+I
Sbjct: 63  AVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESAQYNIAANKIDNVQI 122

Query: 262 VRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +RMS++EFT+AM  +REF RLKD  +D+ SY   TIFVDPPR+G+D  T  MVQ Y  I+
Sbjct: 123 IRMSAEEFTEAMEGKREFRRLKDNGVDLKSYNCNTIFVDPPRAGMDVDTCKMVQGYERIM 182

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           YISCNP++L  +L ILS TH + R ALFDQFPYT HME GVLL RK
Sbjct: 183 YISCNPETLKENLDILSETHNVTRFALFDQFPYTHHMEAGVLLERK 228


>gi|319956633|ref|YP_004167896.1| tRNA (uracil-5-)-methyltransferase [Nitratifractor salsuginis DSM
           16511]
 gi|319419037|gb|ADV46147.1| tRNA (uracil-5-)-methyltransferase [Nitratifractor salsuginis DSM
           16511]
          Length = 374

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 152/365 (41%), Positives = 221/365 (60%), Gaps = 6/365 (1%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S TL    YE+QL  K +RLR ++  F    ++ F S   HYR RAEF IWH+G    + 
Sbjct: 11  SCTLYKLDYEKQLERKAERLRGLLAPFYDGEIERFASPDSHYRARAEFRIWHEGGRADYA 70

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M +      + I+        +   M  ++  +   P+L  KLF +++L + + + ++T+
Sbjct: 71  MGNLSKDGNVIIEECPKVIRPVEERMEPLLEAVNASPVLSRKLFGVEFLAATTGECLITM 130

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YHR LD++W   A  L + L+A      +IGRA K K+ L R++V E L +  +   YR
Sbjct: 131 LYHRPLDESWAREARALEEQLNA-----SIIGRARKQKVVLSREFVTEELEIDSKKYKYR 185

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIA 240
             E  FTQPN  +N  M+ W         G DLLE YCG GNF++ LA +F +VLA EI+
Sbjct: 186 HYEGGFTQPNPYVNTRMIAWARERAAEAGGGDLLEAYCGLGNFTIPLAENFSKVLATEIS 245

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           K S++AA+ N A N V N++ VR+SS+E T A+R+ER+FNRLK I+I  Y FK + VDPP
Sbjct: 246 KNSIKAAKENCALNGVENIEFVRLSSEEMTSALRKERQFNRLKGINIDEYDFKCVLVDPP 305

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD+AT  ++  + +I+YISCNP++L RDL  LS +H +   A FDQFP+T H+E GV
Sbjct: 306 RAGLDEATRELITTFENIIYISCNPETLARDLERLSQSHEVHAAASFDQFPHTEHLESGV 365

Query: 361 LLVRK 365
            L R+
Sbjct: 366 FLQRR 370


>gi|152993415|ref|YP_001359136.1| tRNA (uracil-5-)-methyltransferase [Sulfurovum sp. NBC37-1]
 gi|172048743|sp|A6QBC0|TRMA_SULNB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|151425276|dbj|BAF72779.1| tRNA (uracil-5-)-methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 371

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 151/366 (41%), Positives = 222/366 (60%), Gaps = 7/366 (1%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S  L    Y QQL  K  R+ +++  F    L++F S    YR RAEF IWH+ +   + 
Sbjct: 11  SCALYNQNYTQQLQLKEQRVSELLSPFYTGELELFDSPDSRYRARAEFRIWHESERCDYA 70

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-EPLLRAKLFQIDYLTSQSDQAIVT 120
           M + + K  + I+        I   M +++  I   + +L+ +LF +++L + +D+ +VT
Sbjct: 71  MGNIEKKGAVTIEECPKVIEPIEKRMWKLLEKINASQEVLKQRLFAVEFLATTTDECLVT 130

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           ++YHR LD+AW E A  L   L+ R     ++GR+ K K+ L  ++V E L + G+   Y
Sbjct: 131 MLYHRKLDEAWSEEAKMLERELNCR-----VMGRSRKQKVILSDEFVTETLEIDGKEFTY 185

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEI 239
            Q E+ FTQPN  +NV M+EW +   K +  GD LE YCG GNF+L L+ +FD VLA EI
Sbjct: 186 VQYESGFTQPNPAVNVKMIEWAIWQAKKVGYGDFLESYCGLGNFTLPLSHYFDNVLATEI 245

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K S+ AA  N   N V N+   R++S+E T+A+   REF+RLK ID+ SY F T+ VDP
Sbjct: 246 SKRSIHAALQNCELNAVENITFARLASEEMTEALNGVREFSRLKGIDLKSYDFSTVLVDP 305

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD+ T+ ++    +I+YISCNP++L RDL  L  THT+   ALFDQFP+T H+E G
Sbjct: 306 PRAGLDEGTIELISNIDNIIYISCNPETLARDLETLIKTHTVMEAALFDQFPHTEHVESG 365

Query: 360 VLLVRK 365
           V L +K
Sbjct: 366 VFLQKK 371


>gi|315636702|ref|ZP_07891932.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri JV22]
 gi|315479017|gb|EFU69720.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri JV22]
          Length = 375

 Score =  295 bits (755), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 147/365 (40%), Positives = 227/365 (62%), Gaps = 9/365 (2%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIW-HDGDDLYH 60
           S TL    YE+QL  K+ R ++    F   +  I +S   ++R RAEF IW   G++   
Sbjct: 11  SCTLFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKE 70

Query: 61  IM---FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           I+    +   K  ++I+     S  I  LM +++  ++ +  L  KLF +++L S +   
Sbjct: 71  ILSYAMNDFKKNILKINSCEMVSHHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKDM 130

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +VTLIYH+ L+++W + A  +   L+     I++IGR+ K ++ L  DY++E L ++ + 
Sbjct: 131 LVTLIYHKKLEESWIQKAKEIEKRLN-----IKIIGRSKKQRLVLTNDYINETLNISNQN 185

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
             +   EN FTQPN  +NV M+EWVL  TK    DL ELYCG GNF++ L+  F +VLA 
Sbjct: 186 FFFAYEENGFTQPNTNVNVQMIEWVLKNTKNSSKDLCELYCGGGNFTIPLSTKFRKVLAT 245

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI+K S+++A  N + N + ++  +RMS+++F QA+ + R FNRLKDI++  Y F TIF+
Sbjct: 246 EISKTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIFM 305

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPRSGLD+ T  + + + +I+YISCNP++L RDL  L+ TH IE+ ALFDQF +T H+E
Sbjct: 306 DPPRSGLDNTTRNLAKDFENIIYISCNPETLHRDLEELTKTHKIEKFALFDQFAFTNHIE 365

Query: 358 CGVLL 362
            GV+L
Sbjct: 366 SGVIL 370


>gi|88705120|ref|ZP_01102832.1| tRNA (Uracil-5-)-methyltransferase [Congregibacter litoralis KT71]
 gi|88700815|gb|EAQ97922.1| tRNA (Uracil-5-)-methyltransferase [Congregibacter litoralis KT71]
          Length = 373

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/355 (43%), Positives = 218/355 (61%), Gaps = 8/355 (2%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-Q 66
           + Y    A+K   + + ML  ++P  + F S    YR+RAEF IWHDGDD+ ++MFD   
Sbjct: 9   ENYATLFAKKCSDVEKDMLTLRLPPAERFASPVESYRVRAEFRIWHDGDDIDYVMFDPGH 68

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
            +  + I  F P    I  LM +++A ++  P+LR KLFQ +++ + + + ++TLIYHR 
Sbjct: 69  PRTPVVIKDFAPALAPIRTLMPQLLAFLKSRPVLRRKLFQAEFMATTTGELLLTLIYHRP 128

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDDAW + A  L     AR++ + L+GR+ K K  + RD+V +  TV GR   YRQ E S
Sbjct: 129 LDDAWEDEARAL-----AREFDVSLVGRSRKQKRIIGRDFVVDAFTVDGRCYRYRQYEQS 183

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F QPNA IN  ML W         GDLLELYCGNGNF+L LA  F  V+A E++K    A
Sbjct: 184 FVQPNAPINEAMLTWAWQQGASCPGDLLELYCGNGNFTLPLASRFPAVIATELSKSGTRA 243

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSGL 304
           A  NI  N V+NV+++R+S++E ++AM   REF RL  +   +  Y  +T+FVDPPR+GL
Sbjct: 244 ALENIRDNGVDNVQVIRLSAEEVSEAMSGVREFRRLATLPKPLGDYDLRTVFVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           D  T+  V+ +  ILY+SCNP +L  ++  L+ +H +   ALFDQFPYT H+E  
Sbjct: 304 DPGTLDCVRDFEAILYVSCNPKTLKSNIEALTDSHVVTHYALFDQFPYTPHIESA 358


>gi|149193955|ref|ZP_01871053.1| tRNA (uracil-5-)-methyltransferase [Caminibacter mediatlanticus
           TB-2]
 gi|149135908|gb|EDM24386.1| tRNA (uracil-5-)-methyltransferase [Caminibacter mediatlanticus
           TB-2]
          Length = 363

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 145/357 (40%), Positives = 218/357 (61%), Gaps = 15/357 (4%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YE+QL  K D+L++M   F++P +++   +  H+R RAEF +WH+GD  Y+ M  ++ + 
Sbjct: 19  YEEQLKMKKDKLKEMFSKFEIPEIEVIYDKDEHFRARAEFRVWHEGDKTYYAMRKRKEEG 78

Query: 70  R--MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           R  + I+        I  LM ++M+ I     LR KL+++ +L++   + IVTLIYHR +
Sbjct: 79  RGVIPIEECKIVDKAIYELMPKLMSEIEKNQNLRLKLYEVHFLSNSKGEVIVTLIYHRKV 138

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D++  E   RL+D        +  I R    K   D++Y+ E L + G+T  Y+ IEN+F
Sbjct: 139 DESIAEDIKRLKDKFK----NVDFIVRKKGRKYIFDKNYLIEELEIKGKTYKYKIIENTF 194

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPN  IN  M+ WVL  T  ++GDL+ELYCGNGNF++ L+ +F +V+A EI   S+EAA
Sbjct: 195 TQPNREINKKMISWVLDNTSNLKGDLVELYCGNGNFTIPLSENFRKVVATEINPESIEAA 254

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            YN   N+  N+  + MS+ EF++ +++   FN        SY  K + +DPPR+GLD+ 
Sbjct: 255 TYNAEINNRKNISFLAMSAAEFSE-LKKTGFFN--------SYDLKNVLIDPPRAGLDEK 305

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +   V  + +I+YISCNP++L RDL  LS    I+  A FDQFPYT HMECGV+L R
Sbjct: 306 SRKFVNEFDNIIYISCNPETLKRDLETLSKNRKIKAFAFFDQFPYTNHMECGVVLER 362


>gi|296274443|ref|YP_003657074.1| tRNA (uracil-5-)-methyltransferase [Arcobacter nitrofigilis DSM
           7299]
 gi|296098617|gb|ADG94567.1| tRNA (uracil-5-)-methyltransferase [Arcobacter nitrofigilis DSM
           7299]
          Length = 373

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 223/370 (60%), Gaps = 16/370 (4%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD---- 57
           S TL    YE+QLA K+ R +Q        + +I RSE  H+R RAEF  W + DD    
Sbjct: 11  SCTLYHMNYEEQLAYKLSREKQRFQDITTMDFEIIRSEEEHFRNRAEFRFWKNYDDEKNP 70

Query: 58  -LYHIM--FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            L + M  FD   K  + +D     S  I+ LM +++  I    +L  K++ +++L S +
Sbjct: 71  TLSYGMTSFD---KNILEVDKCSIVSKQIDELMPKLLDEISQSEILNYKIYSVEFLGSTT 127

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           +  +VTLIYH+ LD  W + A  +++ L+     I++IGR+ K KI L  D++ E L + 
Sbjct: 128 NDMLVTLIYHKKLDTTWEKVAKEVQERLN-----IKIIGRSRKQKIVLKEDFIKEELNIN 182

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                +   E  FTQPN  +N+ M+EWVL   +  + DL ELYCG GNF++ L+  F++V
Sbjct: 183 DNVFKFHYKEGGFTQPNTKVNIKMIEWVLNNIE-TKDDLCELYCGGGNFTIPLSTKFNKV 241

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           LA EI+K S+ +A  N   N++ N+  +RMS++EF +A+   REF RLKDI++  Y F T
Sbjct: 242 LATEISKTSINSALLNCELNNITNIDFIRMSAEEFVEALNSVREFRRLKDINLSDYNFST 301

Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
           IFVDPPRSGLDD T  +V+ Y  I+YISCNP++L RDL  L  +H I   +LFDQF Y+ 
Sbjct: 302 IFVDPPRSGLDDTTRELVKNYEQIIYISCNPETLHRDLKELIKSHQILNFSLFDQFSYSG 361

Query: 355 HMECGVLLVR 364
           H+E GV+L +
Sbjct: 362 HIETGVILKK 371


>gi|152985732|ref|YP_001350760.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PA7]
 gi|166988118|sp|A6VCH5|TRMA_PSEA7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|150960890|gb|ABR82915.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PA7]
          Length = 363

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/359 (45%), Positives = 223/359 (62%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQT 67
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W +   ++ ++ MF+Q  
Sbjct: 11  YAAQLEDKKARLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNENRHYAMFEQGD 70

Query: 68  KER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           K   + I+ F   S  IN LM  +      EP L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIEDFPIASRRINELMPRLKDAW-AEPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +D A      +      A +  + L+GR+   +I + RDYV+E L VAGR   YRQ E +
Sbjct: 130 IDAA-----WQQAAEALAAELGVSLVGRSRGKRIVVGRDYVEEELLVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGEREDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|323144069|ref|ZP_08078712.1| tRNA (uracil-5-)-methyltransferase [Succinatimonas hippei YIT
           12066]
 gi|322416145|gb|EFY06836.1| tRNA (uracil-5-)-methyltransferase [Succinatimonas hippei YIT
           12066]
          Length = 378

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 155/366 (42%), Positives = 226/366 (61%), Gaps = 9/366 (2%)

Query: 9   QYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQ 65
            Y+  L EK D +  ++ A    +P  QIF S P +YRMRAEF I+H +     + M+D+
Sbjct: 13  NYQNYLNEKTDHVLNLLKAKGITLPPPQIFPSIPSNYRMRAEFAIFHTETTGFEYCMYDK 72

Query: 66  Q--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           +   K+R+ I+YF   SL IN  M  +      +  ++ +LF+ D+L +     I+TL Y
Sbjct: 73  EGGKKKRVFINYFDGVSLAINKAMSLLKEYALTDLQIKNRLFEADFLCNLQGDVIITLNY 132

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LD+A+     +LR  LH +    +++ RA K KI    D + E L V G+ +   QI
Sbjct: 133 HKKLDEAFAASLEKLRSFLHEKSLNAEIVARARKQKITCKDDTLLECLKVNGKNVYLYQI 192

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           E +FTQPNA     MLE+ L  ++ +Q  DLLELYCG+G F+  LA  + +VLA E+A+ 
Sbjct: 193 EGTFTQPNAVTCEKMLEFALNCSEDMQNTDLLELYCGSGTFTATLAPCYRKVLATEVARV 252

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPP 300
             + A  N+  N+++NVK+VR+S+ E TQA+ RER FNRL  KD+D++ Y FKT+ +DPP
Sbjct: 253 PTQNALRNLEKNNIDNVKLVRLSAVEVTQALNRERTFNRLQQKDVDLNEYDFKTLLIDPP 312

Query: 301 RSGL-DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           R+GL D+A +     +  ++YISC P+S   DL  L+ TH IE+LA FDQFPYTRH+E G
Sbjct: 313 RAGLQDEAALKFTARFDRVIYISCGPESFASDLQFLTKTHRIEKLAFFDQFPYTRHLESG 372

Query: 360 VLLVRK 365
            LLVR+
Sbjct: 373 ALLVRR 378


>gi|255075201|ref|XP_002501275.1| predicted protein [Micromonas sp. RCC299]
 gi|226516539|gb|ACO62533.1| predicted protein [Micromonas sp. RCC299]
          Length = 459

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 220/393 (55%), Gaps = 40/393 (10%)

Query: 8   DQYEQQLAEKVDRLR------------------QMMLAFQVPNLQIFRSEPIHYRMRAEF 49
           D Y ++L  K++R R                  + +    +P  ++  S   ++RMRAEF
Sbjct: 70  DTYREELDVKIERARSHFAAAPAPAPTPEVPHPKPLEEIHLPPTEVHESARSNFRMRAEF 129

Query: 50  HIWHDGDDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID 108
            +WHDGD  Y  MFD    K  + +  F  GS  IN LM   +  I    ++R KLFQ++
Sbjct: 130 RVWHDGDRSYLAMFDSDDPKTPIEVPSFPMGSEKINELMPAFIEEIGRSEVIRRKLFQVN 189

Query: 109 YLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
           +LT+    A+++++YH+ +  D W   A ++R     ++  + +IGR+ K K+ L  DYV
Sbjct: 190 FLTTMKGDALISMLYHKPVKTDEWELEAEKMR-----QRLGVSIIGRSRKQKVVLGNDYV 244

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--------------LAATKGIQGDL 213
            E + V GR L Y+Q+E  FTQPNAGI+  MLEW                AA      DL
Sbjct: 245 MEEIEVDGRVLTYKQLEGGFTQPNAGISAKMLEWARSAAVSDSADAVGEAAAPARRNDDL 304

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           LELYCGNGNF++ +A  F  VLA E++K SV AA+ N  AN   NV   R+SS+E T A+
Sbjct: 305 LELYCGNGNFTIAMAPMFRAVLATEVSKVSVAAAKLNADANGAGNVAFARLSSEELTLAL 364

Query: 274 RREREFNRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDL 332
            + ++F RL D+  + SY  +T+ VDPPR+G+ +     V  +  I+YISCNP++L  D+
Sbjct: 365 DQGKQFARLDDVPPLESYDLRTVLVDPPRAGMGEEVSTFVSRFDRIVYISCNPETLAADV 424

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             L  TH + R A FDQFPYT H+ECG LL+ K
Sbjct: 425 RTLRDTHEVARFAAFDQFPYTPHLECGALLIAK 457


>gi|268679645|ref|YP_003304076.1| tRNA (uracil-5-)-methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617676|gb|ACZ12041.1| tRNA (uracil-5-)-methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 367

 Score =  285 bits (728), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 145/363 (39%), Positives = 220/363 (60%), Gaps = 7/363 (1%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S TL    Y+ Q+A K   ++ +     V     F S   HYR RAEF IW +G+ +++ 
Sbjct: 11  SCTLYALDYQAQVAHKKTAIKTLFEPLHVKEFTFFESACEHYRGRAEFRIWKEGEKIHYA 70

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M     K  + ID        I+ LM +++  I    +LR ++F I++L+S S+  +VTL
Sbjct: 71  MGAMDKKRAVCIDACPKVEERIDTLMPKLLKAIEGVDVLRERIFAIEFLSS-SEHLLVTL 129

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYH+ LD AW + A +L +      + I +IGR+   K  L +D+++ER  +  ++  Y 
Sbjct: 130 IYHKPLDKAWEKEAKKLEEV-----FNIFVIGRSRGIKKVLSQDFIEERFALEAKSYRYH 184

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            IE  F+QPN  +N  M+ WVL+  +  + DLLELYCG GNF+L +A  F++VLA EI+K
Sbjct: 185 IIEGGFSQPNRTMNQTMIGWVLSHLESCE-DLLELYCGYGNFTLPMAGKFNKVLATEISK 243

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S+ +A  N   N V+N+  +R+S++E T A+ +ER FNRL  +++  Y F  +FVDPPR
Sbjct: 244 TSIASALKNCELNDVSNITFLRLSAEELTSALNKERTFNRLAGMNLDDYAFSHVFVDPPR 303

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           SG+D+ ++  +  + +I+YISCNP +L RDL +L   +TIE  ALFDQFP T H+E GV+
Sbjct: 304 SGMDEKSLAFISRFENIIYISCNPQTLKRDLEVLCQNYTIEHFALFDQFPNTEHLESGVI 363

Query: 362 LVR 364
           L R
Sbjct: 364 LKR 366


>gi|224373183|ref|YP_002607555.1| tRNA (uracil-5-)-methyltransferase [Nautilia profundicola AmH]
 gi|262827704|sp|B9LA97|TRMA_NAUPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|223589187|gb|ACM92923.1| tRNA (uracil-5-)-methyltransferase [Nautilia profundicola AmH]
          Length = 365

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 213/357 (59%), Gaps = 13/357 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y++QL  K ++L++M   F +P +++      H+R RAEF +WH+GD  Y+ M  ++   
Sbjct: 19  YDEQLKMKSEKLKEMFSEFDMPEIEVVHGSDEHFRARAEFRVWHEGDKSYYAMRKRKEDG 78

Query: 70  R--MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           R  + I+        I  +M  ++  I     LR KL++ID+L++   + I+TLIYH+ +
Sbjct: 79  RGVIPIEECKIVDKAIYDIMTPLLKEIEKNDNLRFKLYEIDFLSNSKGELIITLIYHKKV 138

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D++  E   +L++      + ++  GR    K   D++Y+ E L +  +T  Y+ IEN+F
Sbjct: 139 DESIAEDIKKLKEKFKNADFIVRKKGR----KYVFDKNYLIEELNINSKTYKYKIIENTF 194

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           +QPN  +N  M+EW +  ++ ++GDL+ELYCGNGNF++ L+  F++V+A EI+K S+EAA
Sbjct: 195 SQPNRQMNQKMIEWAMRNSEDLKGDLVELYCGNGNFTIPLSERFNKVIATEISKESIEAA 254

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            YN   N  +N+  + MS+ EF++  +            I  Y  K I +DPPR+GLDD 
Sbjct: 255 TYNAEINARDNITFLAMSAAEFSKLYKDRSPL-------ITKYDLKNILIDPPRAGLDDK 307

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +   V  + +I+YISCNP++L RDL  L+    I+  A FDQFPYT H ECGV+L +
Sbjct: 308 SREFVNEFDNIIYISCNPETLQRDLKTLAKGREIKAFAFFDQFPYTNHAECGVILKK 364


>gi|303286133|ref|XP_003062356.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455873|gb|EEH53175.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 469

 Score =  267 bits (683), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 149/368 (40%), Positives = 215/368 (58%), Gaps = 33/368 (8%)

Query: 26  LAFQVPN-LQIFRSEPIH-YRMRAEFHIWHDGDDLYHIMFDQQ-TKERMRIDYFMPGSLL 82
           +A  +P+ +++F S   H +RMRAEF +WH GD  +  MFD +  K  + I+ F  GS  
Sbjct: 106 IAVPLPDEIEVFESPKKHHFRMRAEFRVWHAGDKSFMAMFDNEDPKTPVEIETFPMGSER 165

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLT-SQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
           IN+LM E++  I+ EP LR KLFQ+++LT S +D A+V+++YHR LD AW   A   R  
Sbjct: 166 INSLMKEVLREIKDEPALRRKLFQVNFLTTSGTDDALVSMLYHRPLDAAWEAAAEEAR-- 223

Query: 142 LHARKYQIQLIGRANKTK---ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
              ++ ++ +IGR+ K K   I L   +V E LTV G    Y+Q+E  FTQPN+G    M
Sbjct: 224 ---QRMKVSVIGRSRKQKARLIVLGNPFVMETLTVDGEKFTYKQLEGGFTQPNSGTCEKM 280

Query: 199 LEWV----------LAATKGIQG--------DLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           LEW             +  G  G        D LELYCGNGNF++ LA  +  VLA E++
Sbjct: 281 LEWARDVSVDDARAPGSGSGPAGARPRRRDDDFLELYCGNGNFTVALAPLYLNVLATEMS 340

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI---DIHSYRFKTIFV 297
           K SV AA  N   N   N K+VR+S++E    +   +++ R+ +    D+ +Y  +T+ V
Sbjct: 341 KVSVAAAVENFETNGTTNAKVVRLSAEELVLVLDSGKKYERMTNAGLDDLSAYDLRTLLV 400

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPR+G+ +        +  I+YISCNP +L  D  IL+ TH I+R A+FDQFPYT H+E
Sbjct: 401 DPPRAGMGEEVSKFASRFDRIIYISCNPKTLAEDCRILAETHEIKRFAVFDQFPYTPHLE 460

Query: 358 CGVLLVRK 365
            G LLV++
Sbjct: 461 SGALLVKR 468


>gi|242310595|ref|ZP_04809750.1| tRNA (uracil-5-)-methyltransferase [Helicobacter pullorum MIT
           98-5489]
 gi|239522993|gb|EEQ62859.1| tRNA (uracil-5-)-methyltransferase [Helicobacter pullorum MIT
           98-5489]
          Length = 369

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 139/360 (38%), Positives = 215/360 (59%), Gaps = 19/360 (5%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           E  L  K+ R    ML FQ  N ++F S+ + +R R E  I+H  + + + M     K R
Sbjct: 17  EYSLESKIARA-SAMLGFQ--NFEVFGSQEVSFRARCELGIYHKENKIIYTM----RKGR 69

Query: 71  MRIDYFMP---GSLLINAL--MIEMMATIRLEPLL---RAKLFQIDYLTSQSDQAIVTLI 122
                F+P     +L++ L   ++++  +  +      R KLF I+ L++Q D  ++TLI
Sbjct: 70  Q----FVPIQNCPILVDNLQAFLQVLKEVLNDDFFGDFREKLFAIEALSTQMDTILLTLI 125

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ L+D W E A   ++ L  R  +++++GR+   KI +D+D+V E L V  +   YR 
Sbjct: 126 YHKKLNDKWLEIARVFKEVLEKRGIKLEVVGRSRGVKIVVDKDFVIEELKVGKKGYFYRY 185

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            E +F+QPN  +N  ML+W + + K    DLLE+YCG GNF++  +  F +VLA EI+K 
Sbjct: 186 DEGAFSQPNPKVNEKMLKWAMDSLKRSDEDLLEMYCGCGNFTIPFSEKFRKVLATEISKT 245

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           S+ AA++    N  NN+K VR++++E  +A+   REF RL+ I +  Y F ++FVDPPR+
Sbjct: 246 SIRAAKFACEKNQRNNIKFVRLNAQECIEALEGVREFRRLEGIRLQDYCFSSVFVDPPRA 305

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GL +     +Q + +ILYISCNP +L +DL IL  TH I ++A FDQFP+T H+E GVLL
Sbjct: 306 GLGEEVSRFLQRFQNILYISCNPSTLAKDLEILKQTHKISKVAFFDQFPHTPHLESGVLL 365


>gi|34558377|ref|NP_908192.1| tRNA (uracil-5-)-methyltransferase [Wolinella succinogenes DSM
           1740]
 gi|81653300|sp|Q7M7T6|TRMA_WOLSU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|34484096|emb|CAE11092.1| TRNA (URACIL-5-)-METHYLTRANSFERASE [Wolinella succinogenes]
          Length = 370

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/365 (37%), Positives = 214/365 (58%), Gaps = 12/365 (3%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIW-HDGDDLYH 60
            G  L   YE+Q   K    R+++   +     ++ S P  +R RAEF ++ ++   L +
Sbjct: 10  GGCALALPYEEQWKLKESEFRELLPLSKDTPTDLYPSAPHSFRARAEFRLYRNESGRLSY 69

Query: 61  IMFDQQTKERMRIDY---FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
            M  + +K+ + I      +P    I ALM  ++  +  + +L  KLF +++L+  S + 
Sbjct: 70  AMSQKGSKQPLPIQSCPILLPS---IQALMPSLLEALESDEILTQKLFGVEFLSGLSQEV 126

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +V+L+YH+ LD AW E   R    L +      LIGR+   KI L   ++ E LT+  + 
Sbjct: 127 LVSLLYHKRLDHAWEE---RALGLLSSLPTLSSLIGRSKGQKIVLGESFITETLTIDSKP 183

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
             +   E SFTQPN  +N  M+EW+++A    QGDLLELYCG GNF+L L+  + ++LA 
Sbjct: 184 WRFLHYEGSFTQPNPKVNEKMIEWIISAPP--QGDLLELYCGAGNFTLPLSSRYAKILAT 241

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E++K S+ AA+ N   N V ++  VR++++E   A+  EREF RL+++D+ SY F+ +FV
Sbjct: 242 EVSKTSIHAAKQNCELNSVRHISFVRLNAQETQSALEGEREFYRLRELDLPSYDFQAVFV 301

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPR+GL       ++ +  ILYISCNP +L  DL +L  +H +ER ALFDQFPYT H+E
Sbjct: 302 DPPRAGLGAEVASFLRRFDQILYISCNPKTLQSDLEVLQLSHDVERFALFDQFPYTPHLE 361

Query: 358 CGVLL 362
            GV+L
Sbjct: 362 SGVIL 366


>gi|57167831|ref|ZP_00366971.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli RM2228]
 gi|57020953|gb|EAL57617.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli RM2228]
          Length = 362

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/351 (38%), Positives = 212/351 (60%), Gaps = 10/351 (2%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           +L EK   +++    F   N ++F S+  HYR RAE   +HD D++Y+ MF  + K+++ 
Sbjct: 11  KLEEKASFIKEFFKDFYQGNFELFSSKDKHYRTRAELSFYHDKDEIYYAMF--ENKKKII 68

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I+        I A M +++  IR    L+ KLF +++L ++++ +  TL+YH+ ++  + 
Sbjct: 69  IESLEFADEKITAFMPKLLKQIRNNTNLKEKLFGVEFLATKNELS-TTLLYHKNIELIYN 127

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           +    L   L A      LI R+   K+   ++ + + L + GR + Y    + F QPN 
Sbjct: 128 DLN-NLSLELDA-----NLIARSKGKKLVFKKENLRQELDIQGRKIFYEFNNDCFIQPNT 181

Query: 193 GINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            IN  M+ WV    K  +  DLLELYCG GNF+L LA  F+ VLA EI+K ++  A  N 
Sbjct: 182 SINEKMITWVCENLKTQERKDLLELYCGYGNFTLALAIFFNNVLATEISKSNINFALLNC 241

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N+++N+   R+SS+E +QA+++EREF RLKDID+ ++ F  I VDPPR+GLD + + +
Sbjct: 242 KINNISNIHFTRLSSEELSQALKKEREFFRLKDIDLDNFNFSHILVDPPRAGLDKSVIDL 301

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           ++ Y +I+YISCNP SL  +L  L+ TH +E+ ALFDQF  T H+ECGVLL
Sbjct: 302 IKNYENIIYISCNPISLKENLKELALTHKVEKFALFDQFVNTPHLECGVLL 352


>gi|305432144|ref|ZP_07401310.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli JV20]
 gi|304444809|gb|EFM37456.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli JV20]
          Length = 362

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 135/351 (38%), Positives = 212/351 (60%), Gaps = 10/351 (2%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           +L EK   +++    F   N ++F S+  HYR RAE   +HD D++Y+ MF  + K+++ 
Sbjct: 11  KLEEKASFIKEFFKDFYQGNFELFSSKDKHYRTRAELSFYHDKDEIYYAMF--ENKKKII 68

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I+        I A M +++  IR    L+ KLF +++L ++++ +  TL+YH+ ++  + 
Sbjct: 69  IESLEFADEKITAFMPKLLKQIRNNTNLKEKLFGVEFLATKNELS-TTLLYHKNIELIYN 127

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           +    L   L A      LI R+   K+   ++ + + L + GR + Y    + F QPN 
Sbjct: 128 DLN-NLSLELDA-----NLIARSKGKKLVFKKENLRQELDIQGRKIFYEFNNDCFIQPNT 181

Query: 193 GINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            IN  M+ WV    K  +  DLLELYCG GNF+L LA  F+ VLA EI+K ++  A  N 
Sbjct: 182 SINEKMITWVCENLKTQERKDLLELYCGYGNFTLALAIFFNNVLATEISKSNINFALLNC 241

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N+++N+   R+SS+E +QA+++EREF RLKDID+ ++ F  I VDPPR+GLD + + +
Sbjct: 242 KINNISNIHFTRLSSEELSQALKKEREFFRLKDIDLDNFNFSHILVDPPRAGLDKSVIDL 301

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           ++ Y +I+YISCNP SL  +L  L+ TH +E+ ALFDQF  T H+ECG+LL
Sbjct: 302 IKNYENIIYISCNPISLKENLKELALTHKVEKFALFDQFVNTPHLECGILL 352


>gi|253827633|ref|ZP_04870518.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|253511039|gb|EES89698.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
          Length = 370

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 214/367 (58%), Gaps = 25/367 (6%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           E  L  KVD  +Q++    +    I       +R R E  I+   D + + M  ++ K+ 
Sbjct: 17  ECSLESKVDYAKQLL---GINQCDIVSLRQDSFRARCELGIFFKDDKINYAM--RKGKQF 71

Query: 71  MRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           + I+           F+P  +L   L  E           R KLF I+ L++Q+D+ ++T
Sbjct: 72  VCIENCCNLLESLQKFLP--VLKKKLNQEFFKD------FRQKLFAIEVLSTQNDEILLT 123

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           LIYH+ L++ W E A  L+ AL   ++++++IGR+   K+ +++DYV E+L + G+   Y
Sbjct: 124 LIYHKKLNETWLENAKELKKALQ--EFRVEIIGRSKGVKLIVEKDYVVEKLEIDGKKYYY 181

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           R  E +FTQPN  IN  M+EWVL      +GDLLE+YCG GNF++ L++ F +VLA EI+
Sbjct: 182 RYDEGAFTQPNPKINEKMIEWVLQNISQSKGDLLEMYCGCGNFTIPLSQKFRKVLATEIS 241

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           K S+ AA++    N  NN+  VR+S +E  +A+   R+FNRL+ I++  Y F  I VDPP
Sbjct: 242 KVSIRAAKFACQRNGCNNITFVRLSGQECIEAIEGIRKFNRLEQINLEEYDFSMILVDPP 301

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R GL +     +Q +  ILYISCNP SL +DL ILS TH I + A FDQFP+T H+E G+
Sbjct: 302 RGGLGEEVCRFLQNFSSILYISCNPLSLAKDLKILSQTHRIVKAAFFDQFPHTSHLETGI 361

Query: 361 LLVRKPS 367
           LL +  S
Sbjct: 362 LLQKVDS 368


>gi|237752331|ref|ZP_04582811.1| tRNA (uracil-5-)-methyltransferase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375820|gb|EEO25911.1| tRNA (uracil-5-)-methyltransferase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 367

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/338 (38%), Positives = 210/338 (62%), Gaps = 13/338 (3%)

Query: 32  NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER----MRIDYFMPGSLLINALM 87
           + ++F+SE  H+R RAE  I+HD  ++++ M  +  KER    +     +P    I   +
Sbjct: 34  DFEVFKSEQSHFRARAELGIYHDNREIFYTM--RGEKERFVKIVNCQNLLPN---IQKTL 88

Query: 88  IEMMATIRLEPL--LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA- 144
             ++A +  +     + +LF ++ L +Q++  ++TLIYHR L+++W + A +L+  L   
Sbjct: 89  PVLLAILNSKDFNAFKERLFSLEILANQNNALLLTLIYHRKLEESWIQEAKKLQLKLEKF 148

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
             +  +++GR+   K+ L++DY+ + L + G+   YR  E +F+QPNA IN  M+ WVL 
Sbjct: 149 LGFHFEIVGRSRGVKLVLEKDYLMQTLEILGKQFCYRYNEGAFSQPNATINQQMITWVLE 208

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             K   GDLLE+YCG GNF++ L+  F +VLA E++K S+ A ++    N + N+  VR+
Sbjct: 209 HLKE-GGDLLEMYCGCGNFTIPLSFCFGKVLATEVSKTSINALKFACETNQIPNIYSVRL 267

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
           S  E  +A+  +REFNRLK ID++++ FK++FVDPPR GL       ++ +  I+YISCN
Sbjct: 268 SGAECIEALNGKREFNRLKHIDLNTFNFKSVFVDPPRCGLGLEVCAFLKRFKQIIYISCN 327

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           P +L +DL IL  TH I+  A FDQF +T+H+ECGV+L
Sbjct: 328 PVTLAQDLDILKQTHKIKHAAFFDQFAHTKHLECGVIL 365


>gi|153952276|ref|YP_001398252.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|166988116|sp|A7H422|TRMA_CAMJD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|152939722|gb|ABS44463.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 357

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 136/353 (38%), Positives = 209/353 (59%), Gaps = 10/353 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + ++ TL+YH+ ++D    
Sbjct: 72  EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTTKQELSL-TLLYHKNIEDIKSN 130

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L + GR + Y    + F QPN  
Sbjct: 131 LE-NLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGREIFYEFNNDCFIQPNTT 184

Query: 194 INVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           IN  M+ WV      IQ   DLLELYCG GNF+L LA+ F +VLA EI+K S+  A  N 
Sbjct: 185 INEKMITWVCEIL-SIQKRMDLLELYCGYGNFTLALAQFFFKVLATEISKSSINFALKNC 243

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + +
Sbjct: 244 KLNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDL 303

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++ Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 304 IKKYENIIYISCNPITLKENLKELSLTHRVENFALFDQFVNTPHLECGVFLSK 356


>gi|323451355|gb|EGB07232.1| hypothetical protein AURANDRAFT_53938 [Aureococcus anophagefferens]
          Length = 473

 Score =  255 bits (652), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 142/378 (37%), Positives = 213/378 (56%), Gaps = 23/378 (6%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEP-IHYRMRAEFHIWHD----GDDLYHIMF 63
           Y+ QLA KV R+R ++    ++P        P  H+R R+ F +WH+    G  +  IM+
Sbjct: 17  YDAQLAAKVARVRALLGEVAELPETTTVVPSPKSHFRQRSNFRVWHEPEATGLGVSFIMY 76

Query: 64  DQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
              +  KE +R+  F  G    NALM  ++A ++  P+LR K+ +  + ++    A+V  
Sbjct: 77  SPSSSDKEPLRVGDFARGDAKTNALMGPVLAALKTTPVLRDKVIECRFHSTLRGGAMVLF 136

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-----CLDRDYVDERLTVAGR 176
            Y+R +D      A     A       + +IGR+ + +I     C  R  V+E L +   
Sbjct: 137 AYNRPIDADAAWKAAAEALAAQLGP-DVVVIGRSRRVQIAVGGACPGRAQVEETLEIPCE 195

Query: 177 T---LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNFSLVLAR 229
               L   Q+E  F+QPN  +   ML W +AATK  +G    DLLELYCGNGNF++ L+R
Sbjct: 196 PPLRLELVQLEGEFSQPNGAVCERMLAWAMAATKPAEGAAPRDLLELYCGNGNFTIPLSR 255

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDI 287
           HF +VLA E+ KP+   AR N A N  +NV + R+S+ E  +A+RR+REF RLK+  +D+
Sbjct: 256 HFRKVLATELTKPNAAVARENAAKNGRSNVVVARLSAAEVAEALRRDREFARLKELGVDL 315

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
            +Y   T+FVDPPR GLD  T+ +   +  ++Y+SC PD+L  +L  L+ TH +   A+F
Sbjct: 316 DAYDLGTLFVDPPRCGLDAPTLKLAHGFETVVYMSCGPDTLAENLHALNATHVVADFAVF 375

Query: 348 DQFPYTRHMECGVLLVRK 365
           DQFPYT H E GV+L R+
Sbjct: 376 DQFPYTDHCEVGVVLKRR 393


>gi|157165225|ref|YP_001466961.1| tRNA (uracil-5-)-methyltransferase [Campylobacter concisus 13826]
 gi|226705971|sp|A7ZDV3|TRMA_CAMC1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|112800933|gb|EAT98277.1| tRNA (uracil-5-)-methyltransferase [Campylobacter concisus 13826]
          Length = 367

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 132/360 (36%), Positives = 207/360 (57%), Gaps = 7/360 (1%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           L   Y +Q++ K D ++Q    F      +F S P HYR RAEF IWH+G  L + M   
Sbjct: 14  LFTSYSEQISFKTDLIKQNFSHFYDGKFDLFSSSPKHYRTRAEFGIWHEGSKLSYTMHAS 73

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           +  +++ ID        I+ LM  ++ +++ + +LR KLF ++++  +S   +VTL+YH+
Sbjct: 74  EKGKKVFIDECPKVCEQISHLMPRLLESLQDDEILRTKLFGVEFIACKSG-TLVTLLYHK 132

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD  + E A+++     A K  + ++ R+   K+      + + L V G+   +   EN
Sbjct: 133 KLDSEF-EAAMKIL----ASKLDVMILARSRGQKLLSGELNLVDELNVDGQIYKFSLSEN 187

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           +F QPN  +N  M+ W     +    DLLELYCG+GNF++ L+  F  VLA EI+K S+ 
Sbjct: 188 AFIQPNKAVNEKMIAWAKECVQS-GADLLELYCGHGNFTIPLSFKFKNVLATEISKSSIA 246

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   N V N+K +RM + E   A    REFNRLKDI +  + F  + VDPPR+GL 
Sbjct: 247 NALKNCELNGVENIKFLRMDADELMSAFAGVREFNRLKDIKLSDFNFSHVLVDPPRAGLS 306

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +  ++ + +I+YISCNP++L  +L+ L+ +H + + ALFDQF  T H+ECGVLL  K
Sbjct: 307 ESVINFIRNFKNIIYISCNPETLKENLNELTKSHKVIKFALFDQFANTHHIECGVLLEAK 366


>gi|121613439|ref|YP_001000516.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|134035056|sp|A1VZH5|TRMA_CAMJJ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|87249351|gb|EAQ72311.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 357

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + + VTL+YH+ ++D    
Sbjct: 72  EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTTKQELS-VTLLYHKNIEDIKSN 130

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 131 LE-NLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV       +  DLLELYCG GNF+L LA  F +VLA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|148926533|ref|ZP_01810215.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845227|gb|EDK22321.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 380

 Score =  254 bits (648), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD + K++  I
Sbjct: 35  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 94

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + + VTL+YH+ ++D    
Sbjct: 95  EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIEDIKSN 153

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L + GR + Y    + F QPN  
Sbjct: 154 LE-NLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 207

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV       +  DLLELYCG GNF+L LA  F ++LA EI+K ++  A  N  
Sbjct: 208 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 267

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 268 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 327

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH  E  ALFDQF  T H+ECGV L +
Sbjct: 328 KKYENIIYISCNPITLKENLKELSLTHRAEEFALFDQFVNTPHLECGVFLSK 379


>gi|157415098|ref|YP_001482354.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|172047119|sp|A8FLP0|TRMA_CAMJ8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157386062|gb|ABV52377.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747739|gb|ADN91009.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931160|gb|EFV10133.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 357

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + +I TL+YH+ ++D    
Sbjct: 72  EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIEDIKSN 130

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 131 LE-NLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTT 184

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV       +  DLLELYCG GNF+L LA  F +VLA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCK 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|283957181|ref|ZP_06374645.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791357|gb|EFC30162.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 357

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 207/354 (58%), Gaps = 12/354 (3%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F     ++F S+  HYR R E   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKEFKLFASKDKHYRTRVELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + +I TL+YH+ ++D    
Sbjct: 72  EYLDFADEKICAFMPKLLECLRQDSKLKEKLFGVEFLTTKQELSI-TLLYHKNIEDIKSN 130

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 131 LE-NLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184

Query: 194 INVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           IN  M+ WV   L+  K +  DLLELYCG GNF+L LA  F ++LA EI+K ++  A  N
Sbjct: 185 INEKMITWVCEILSTQKRM--DLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKN 242

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + 
Sbjct: 243 CELNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVID 302

Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++ Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 303 LIKKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFANTPHLECGVFLSK 356


>gi|205356330|ref|ZP_03223095.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345715|gb|EDZ32353.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 357

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD + K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + + VTL+YH+ ++D    
Sbjct: 72  EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIEDIKSN 130

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L + GR + Y    + F QPN  
Sbjct: 131 LE-NLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 184

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV       +  DLLELYCG GNF+L LA  F ++LA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTINIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH  E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRAEEFALFDQFVNTPHLECGVFLSK 356


>gi|86150214|ref|ZP_01068441.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597584|ref|ZP_01100818.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|85839330|gb|EAQ56592.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190176|gb|EAQ94151.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|284926076|gb|ADC28428.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927708|gb|EFV07037.1| tRNA-uracil-5-methyltransferase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929085|gb|EFV08317.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 357

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M  ++  +R +  L+ KLF +++LT++ + +I TL+YH+ ++D    
Sbjct: 72  EYLDFADEKICAFMPRLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIEDIKSN 130

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 131 LE-NLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV       +  DLLELYCG GNF+L LA  F ++LA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYGNIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|86152063|ref|ZP_01070275.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153337|ref|ZP_01071541.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|315124348|ref|YP_004066352.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840848|gb|EAQ58098.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85843063|gb|EAQ60274.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|315018070|gb|ADT66163.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 357

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +  +  L+ KLF +++LT++ + + VTL+YH+ ++D    
Sbjct: 72  EYLDFADEKICAFMPKLLEYLHQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIEDIKSN 130

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 131 LE-NLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV       +  DLLELYCG GNF+L LA  F +VLA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|218562459|ref|YP_002344238.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|20178174|sp|Q9PP92|TRMA_CAMJE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|112360165|emb|CAL34959.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
          Length = 357

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 132/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M  ++  +R +  L+ KLF +++LT++ + +I TL+YH+ ++D    
Sbjct: 72  EYLDFADEKICAFMPRLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIEDIKSN 130

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 131 LE-NLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV       +  DLLELYCG GNF+L LA  F ++LA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYGNIIYISCNPMTLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|255322717|ref|ZP_05363861.1| tRNA (uracil-5-)-methyltransferase [Campylobacter showae RM3277]
 gi|255300278|gb|EET79551.1| tRNA (uracil-5-)-methyltransferase [Campylobacter showae RM3277]
          Length = 377

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 140/370 (37%), Positives = 213/370 (57%), Gaps = 14/370 (3%)

Query: 3   GTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD----GDD 57
           G+  +D  YE+Q+  K D +R+    F     + F S+   YR RAEF IWHD      D
Sbjct: 13  GSCTLDMPYEEQVKFKTDFIRREFEPFYSGEFEFFASQSAAYRTRAEFGIWHDIWHSAVD 72

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           L + M   +TK R+ ID     +  I  LM  ++  +    +L+ +LF  ++++  S   
Sbjct: 73  LAYTMHGAKTK-RIMIDECPKVAAPIANLMPRLLEALAKNQILKERLFGAEFISCASG-I 130

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           + TL+YH+ L +A +     L  AL     ++ +  RA   K+      + + L + G+ 
Sbjct: 131 LATLLYHKRLGEAEQSEIESL--ALKFADLRVTIAARAKGQKLLSGELNLQDSLNIGGKI 188

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ--GDLLELYCGNGNFSLVLARHFDRVL 235
             +   + +F QPN  +N  M+ W   A + ++   DLLELYCG+GNF++ ++  F RVL
Sbjct: 189 YKFTFGDGAFIQPNTAVNEKMIAW---AKRCVERGADLLELYCGHGNFTVPMSEKFKRVL 245

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           A EI+K S+  A  N   N VNN++ +RMS++E   A RREREFNRL+++DI SY F  +
Sbjct: 246 ATEISKSSIANALKNCELNGVNNIEFLRMSAEELMSAFRREREFNRLRELDIFSYDFSHV 305

Query: 296 FVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355
            VDPPR+GLD++ +  ++ Y +I+YISC+P SL RDL+ L+ TH   + A+FDQF  T H
Sbjct: 306 LVDPPRAGLDESVINFIKNYENIIYISCSPQSLKRDLTQLAATHEAVKFAVFDQFANTTH 365

Query: 356 MECGVLLVRK 365
           +ECGVLL  K
Sbjct: 366 IECGVLLKGK 375


>gi|283954401|ref|ZP_06371921.1| LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794018|gb|EFC32767.1| LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 354

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 133/354 (37%), Positives = 206/354 (58%), Gaps = 12/354 (3%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   ++     F   + ++F S+  HYR R E   +H+ D L++ MFD + K++  I
Sbjct: 9   LDEKHSFVKTYFKEFYTKDFKLFSSKAKHYRTRVELSFYHENDTLFYAMFDSKNKKKYII 68

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
            +       I   M +++  +R +  L+ KLF +++LT++ + +I TL+YH+ ++D  + 
Sbjct: 69  KHLDFADEKICTFMPKLLEYLRQDDRLKEKLFGVEFLTTKQELSI-TLLYHKNIEDIKQN 127

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 128 LE-NLSNILH-----INLIARSKGKKLVFKTENLRQTLNIQDREIFYEFNNDCFIQPNTA 181

Query: 194 INVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           IN  M+ WV   L+  K I  DLLELYCG GNF+L LA+ F +VLA EI+K ++  A  N
Sbjct: 182 INEKMITWVYEILSTQKRI--DLLELYCGYGNFTLALAQLFFKVLATEISKNNINFALKN 239

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N+  N+   R+SS+E + A+++ER+F RL+DI +  + F  + VDPPR+GLD + + 
Sbjct: 240 CKLNNTTNIHFARLSSEELSLAIKKERDFFRLRDIQLDDFNFSHVLVDPPRAGLDKSVID 299

Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +V+ Y +I+YISCNP +L  +L  LS TH IE  ALFDQF  T H+ECGV L +
Sbjct: 300 LVKKYENIIYISCNPITLKENLKELSLTHKIENFALFDQFVNTPHLECGVFLSK 353


>gi|223041073|ref|ZP_03611330.1| tRNA (uracil-5-)-methyltransferase [Campylobacter rectus RM3267]
 gi|222877686|gb|EEF12810.1| tRNA (uracil-5-)-methyltransferase [Campylobacter rectus RM3267]
          Length = 374

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 206/365 (56%), Gaps = 8/365 (2%)

Query: 3   GTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           G+  +D  YE+Q+  K   +R+    F     + F S+   YR RAEF IW +G++L + 
Sbjct: 13  GSCTLDAPYEEQVEFKKGFIRREFEPFYSGEFEFFASQKAGYRTRAEFGIWREGEELSYT 72

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M   + K R+ ID     +  I  LM  ++  +    +L+ KLF  ++++  S   + TL
Sbjct: 73  MHGAKAK-RVFIDECPKVAAPIANLMPRLLGALVKNQILKEKLFGAEFISCASG-ILATL 130

Query: 122 IYHRLLDDAWR-ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           +YH+ L  A + E     R+ +  R   + +  RA   K+      + +RL +  +   +
Sbjct: 131 LYHKHLGKAEQGEIESLAREFVGHR---VTIAARAKGQKLLSGELNLQDRLNIGDKIYKF 187

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
              + +F QPN  +N  M+ W     +    DLLELYCG+GNF++ +A  F RVLA EI+
Sbjct: 188 TFGDGAFIQPNTAVNEKMIAWAKGCVE-RGADLLELYCGHGNFTVAMAEKFKRVLATEIS 246

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           K S+  A  N   N VNN+K +RMS++E   A  REREFNRL+++DI SY F  + VDPP
Sbjct: 247 KSSIANALKNCELNGVNNIKFLRMSAEELISAFGREREFNRLRELDIFSYDFSHVLVDPP 306

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD + +  ++ Y +I+YISC+P SL RD++ L  TH   + A+FDQF  T H+ECGV
Sbjct: 307 RAGLDASVINFIKNYENIVYISCSPQSLKRDMAQLDATHEAVKFAVFDQFANTAHIECGV 366

Query: 361 LLVRK 365
           LL  K
Sbjct: 367 LLRSK 371


>gi|57237672|ref|YP_178920.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni RM1221]
 gi|81557510|sp|Q5HUW5|TRMA_CAMJR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|57166476|gb|AAW35255.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni RM1221]
 gi|315058281|gb|ADT72610.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 357

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/352 (37%), Positives = 204/352 (57%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD + K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
            Y       I   M +++  +R +  L+ KLF +++LT++ + + VTL+YH+ ++D    
Sbjct: 72  KYLDFADEKICTFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIEDIKSN 130

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L + GR + Y    + F QPN  
Sbjct: 131 LE-NLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 184

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV       +  DLLELYCG GNF+L LA  F +VLA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|154175098|ref|YP_001408132.1| tRNA (uracil-5-)-methyltransferase [Campylobacter curvus 525.92]
 gi|262827638|sp|A7GY40|TRMA_CAMC5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|112803124|gb|EAU00468.1| tRNA (uracil-5-)-methyltransferase [Campylobacter curvus 525.92]
          Length = 364

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/358 (34%), Positives = 204/358 (56%), Gaps = 13/358 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YE QL  K + +      F    L+IF S+P  YR RAEF IWH+ D++Y+ M   ++K 
Sbjct: 18  YEDQLNFKANFIADKFREFFDGELEIFSSKPQRYRSRAEFGIWHENDEIYYTMHGSRSK- 76

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL--L 127
            ++I   +     I ALM  ++  +     L++K+F ++++++    A++ L + RL  L
Sbjct: 77  FIKISECLKVDESIAALMPRLLEELGTSNELKSKIFGVEFISTSELCAVILLYHKRLEGL 136

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           + A+ E A RL          ++++ R+   KI  D   + +   + G        +++F
Sbjct: 137 EAAFSELAKRL---------GVKIVARSRGQKISSDERELCDSFEINGLRYALNFGDSAF 187

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            QPN  +N  M+ W + A +  + D+LE+YCG+GNF++ LA  F RVLA EI+K S+  A
Sbjct: 188 IQPNKCVNEKMISWAMNAVQNAE-DMLEMYCGHGNFTIPLAGKFRRVLATEISKSSIANA 246

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N + N+K +RMS++E   A   ER F RL+ +++  + F  + VDPPR+GL+ +
Sbjct: 247 LKNCERNGIGNIKFLRMSAEELMSAFSGERGFRRLEGVNLADFTFSHVLVDPPRAGLEAS 306

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +  ++ Y +I+YISCNP +L  +L  LS TH   + A+FDQF  T H+ECGV+L ++
Sbjct: 307 VINFIKNYENIVYISCNPQTLYENLKELSLTHKATKFAMFDQFANTNHIECGVVLKKR 364


>gi|222823969|ref|YP_002575543.1| tRNA (uracil-5-)-methyltransferase [Campylobacter lari RM2100]
 gi|262827649|sp|B9KCK3|TRMA_CAMLR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|222539191|gb|ACM64292.1| tRNA (uracil-5-)-methyltransferase [Campylobacter lari RM2100]
          Length = 346

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 127/349 (36%), Positives = 210/349 (60%), Gaps = 13/349 (3%)

Query: 16  EKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRID 74
           EK+   + +  +     +Q F+S    YR RAEF I+H +  ++ + M+  + K+++ I 
Sbjct: 5   EKIALNKALFSSLYDKEIQCFKSPLKAYRTRAEFCIYHHENGEISYAMY--ENKKKIPIK 62

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
            F      I A M  ++    L   L+ KLF +++L ++ D +I TL+YH+ ++   ++ 
Sbjct: 63  NFEIADEKIQAYMPILLDN--LNENLKHKLFGVEFLATKIDLSI-TLLYHKNIESITQD- 118

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
              L++   ++K  ++LI R+   K+  + + + + L +  + + Y    + F QPN  I
Sbjct: 119 ---LQEL--SKKLNLKLIARSRGKKLVFNGENLKQILNIKNKEIFYEFNNDCFIQPNTTI 173

Query: 195 NVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           N  M+EWV+    K  + DLLELYCG GNF++ LA++F+++LA EI+K ++E A  N   
Sbjct: 174 NEKMIEWVIDLLEKEERKDLLELYCGYGNFTIALAKYFNKILATEISKKNIEFALKNCDL 233

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + N+   R+SS+E +QA+++EREFNRLK ID+  +    + VDPPR+GLD + + +++
Sbjct: 234 NSIKNISFTRLSSEELSQALKKEREFNRLKGIDLDGFNISHVLVDPPRAGLDVSVIELIK 293

Query: 314 AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            Y +I+YISCNP +L  +L ILS +H I  LA FDQF  T H+ECGV L
Sbjct: 294 KYENIIYISCNPITLRENLEILSQSHEILNLAFFDQFANTSHLECGVHL 342


>gi|315638470|ref|ZP_07893647.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis JV21]
 gi|315481461|gb|EFU72088.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis JV21]
          Length = 354

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 210/358 (58%), Gaps = 15/358 (4%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQT 67
            +EQ++ E     +++   F     ++F S   H+R R E   +H +  ++++ MFD + 
Sbjct: 4   NFEQKILEA----KELFKPFYKGEFELFSSPTSHFRTRVELSFFHSENGEIFYAMFDGRK 59

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K  +    F+   + +  LM +++  +  +  L+ KLF +++L S+ + + VTL+YH+ +
Sbjct: 60  KYIVENLDFVDEKICL--LMPKLLKALNDDNTLKNKLFGVEFLASKKELS-VTLLYHKDI 116

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
                   ++   A  AR   + LI R+   K+   ++ + + L + G  + Y    + F
Sbjct: 117 S------TLKENLANLARNLNLNLIARSKGKKLVFGKENLRQVLDIKGEAIHYEFDNDCF 170

Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            QPN  IN  M+EWVL   + G + DLLELYCG GNF+L LA  F ++LA E++K ++  
Sbjct: 171 IQPNTYINEKMIEWVLKQISTGEKNDLLELYCGYGNFTLALASSFKQILATELSKKNIAY 230

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N   N+  N+   R+SS+E ++A+++EREF RLKDID+ S+ F  I +DPPR+GL++
Sbjct: 231 ALKNCTLNNATNIHFARLSSEELSKALKKEREFFRLKDIDLDSFHFSHILLDPPRAGLEE 290

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + + + Q Y HI+YISCNP SL  +L+ L+ THTI   ALFDQF  T H+E GV+L +
Sbjct: 291 SVIELAQNYHHIIYISCNPTSLKENLTKLTKTHTITNFALFDQFALTPHLESGVILKK 348


>gi|32034047|ref|ZP_00134291.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 229

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 154/227 (67%), Gaps = 5/227 (2%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-----L 58
            L I+QY   LAEK   L  ++  F  P L++F SE  H+RMRAEF +WHD ++     L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETGHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R  ++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYCVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNG F L
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGIFRL 228


>gi|323448927|gb|EGB04820.1| hypothetical protein AURANDRAFT_12344 [Aureococcus anophagefferens]
          Length = 343

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 136/348 (39%), Positives = 204/348 (58%), Gaps = 18/348 (5%)

Query: 31  PNLQIFRSEPIHYRMRAEFHIWHDGDDLYH-------IMFDQQTKERMRIDY--FMPGSL 81
           P  ++F SE   +RMRA F +W +G  L H       +M+++  + R  ++   F  GS 
Sbjct: 1   PAAEVFESERSGFRMRASFQVWREGS-LDHGNQTRHLVMYERGDEARNPVECLDFPMGSD 59

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
            + +L+  + A ++ E  L  K+     LT+ +  A+++L Y+R L       A     A
Sbjct: 60  RLRSLLPPLTAALQGE-TLGYKINDARLLTTLAGDALLSLTYNRPLAGDD---AWDAAAA 115

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR-TLIYRQIENSFTQPNAGINVHMLE 200
             A  + ++++GR+ K K  +  D V E L V GR T  Y Q E +FTQPNA +   ML 
Sbjct: 116 DFAAAHDVKVVGRSRKYKTAVGADEVREVLDVPGRGTCAYWQTEGAFTQPNANVCRSMLG 175

Query: 201 WVLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           W +AAT     GDL ELYCGNG F++ LA +F RV+A E++K SV  AR N+AAN  +N 
Sbjct: 176 WAVAATANRGHGDLCELYCGNGCFTVALAPNFRRVVATELSKASVALARRNLAANGNDNA 235

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           ++ ++S++EF +A    R F RL D    +      T+FVDPPR+GLD   V + + +  
Sbjct: 236 RVAKLSAEEFVEAFDGARTFGRLLDAGETLAFDALDTLFVDPPRAGLDATCVELARRFAT 295

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++Y+SCNP++L RD+++L+ TH + RLA FDQFPYT H+E GV+L RK
Sbjct: 296 VVYVSCNPETLARDVALLAATHDVSRLAAFDQFPYTHHLEAGVVLERK 343


>gi|118475420|ref|YP_892144.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp.
           fetus 82-40]
 gi|134035055|sp|A0RPL1|TRMA_CAMFF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|118414646|gb|ABK83066.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 367

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 125/363 (34%), Positives = 214/363 (58%), Gaps = 10/363 (2%)

Query: 3   GTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           G+  +D  Y +Q+  K + +++    F    +  FRS    +R RAEF ++HD + L + 
Sbjct: 13  GSCTLDMPYSEQIDFKKNFIKEHFKDFHNGEIIFFRSPISKFRSRAEFGLYHDDNSLSYT 72

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M  +     ++ID        I+ +M  ++  ++    L+AKLF ++++T++ D+ ++ L
Sbjct: 73  M-RRADGGYLKIDKCSIVDEKISVIMPVLLDLLKENQNLKAKLFGVEFITTR-DEILIIL 130

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YH+      +E            K ++ LI R+   K+      ++E+L + G++  Y 
Sbjct: 131 LYHKDASTIIQELTWL------QSKLKVGLIARSKGKKLVFGSSSLNEKLFINGKSYHYV 184

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             + +F QPN  IN +M+ WVL  T   + DLLELYCG+GNF++ L+  F++VLA EI+K
Sbjct: 185 FGDAAFIQPNRNINENMISWVLDHTTDCK-DLLELYCGHGNFTIPLSFKFNKVLATEISK 243

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S+ +A  N   N V+N+K  R+S++E  +A   +R+F RL+DID+ SY F  I VDPPR
Sbjct: 244 ASINSALKNCELNGVDNIKFTRLSAEELMEAFLFKRDFRRLQDIDLRSYEFSHILVDPPR 303

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +G D + +  ++ Y +I+YISCNP +L  +L +L  TH++++ A+FDQF +T H+EC V+
Sbjct: 304 AGCDKSVLDFIRNYENIIYISCNPLTLKENLKLLCKTHSVDKFAIFDQFVHTNHIECAVV 363

Query: 362 LVR 364
           L +
Sbjct: 364 LKK 366


>gi|57242357|ref|ZP_00370296.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis
           RM3195]
 gi|57017037|gb|EAL53819.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis
           RM3195]
          Length = 354

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 210/358 (58%), Gaps = 15/358 (4%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD-DLYHIMFDQQT 67
            +EQ++ E     +++   F     ++F S   H+R R E   +H  D ++++ MF+ + 
Sbjct: 4   NFEQKILEA----KELFKPFYKGEFELFSSPTSHFRTRVELSFFHSEDGEIFYAMFNGRK 59

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K  +    F+   + +  LM +++  +  +  L+ KLF +++L S+ + + VTL+YH+ +
Sbjct: 60  KYIVENLDFVDEKICL--LMPKLLKALNDDNTLKNKLFGVEFLASKKELS-VTLLYHKDI 116

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
                   ++   A  AR   + LI R+   K+   ++ + + L + G  + Y    + F
Sbjct: 117 S------TLKENLANLARNLNLNLIARSKGKKLVFGKENLRQVLDIKGEAIHYEFDNDCF 170

Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            QPN  IN  M+EWVL   +   + DLLELYCG GNF+L LA  F ++LA E++K ++  
Sbjct: 171 IQPNTYINEKMIEWVLKQISTEEKNDLLELYCGYGNFTLALASSFKQILATELSKKNIAY 230

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N   N+  N++  R+SS+E ++A+++EREF RLKDID+ S+ F  I +DPPR+GL++
Sbjct: 231 ALKNCTLNNATNIRFARLSSEELSKALKKEREFFRLKDIDLDSFHFSHILLDPPRAGLEE 290

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + + + Q Y HI+YISCNP SL  +L+ L+ THTI   ALFDQF  T H+E GV+L +
Sbjct: 291 SVIELAQNYHHIIYISCNPTSLKENLTKLTKTHTITNFALFDQFALTPHLESGVILKK 348


>gi|153217640|ref|ZP_01951321.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae 1587]
 gi|124113414|gb|EAY32234.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae 1587]
          Length = 168

 Score =  228 bits (582), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 107/163 (65%), Positives = 130/163 (79%), Gaps = 2/163 (1%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AK SVEAA++NIAAN + NV+I+RM
Sbjct: 5   CTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKLSVEAAQFNIAANQIGNVQIIRM 64

Query: 265 SSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
           S++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  T  MVQ Y  ILYIS
Sbjct: 65  SAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYIS 124

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 125 CNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 167


>gi|154147974|ref|YP_001406923.1| tRNA (uracil-5-)-methyltransferase [Campylobacter hominis ATCC
           BAA-381]
 gi|262827640|sp|A7I332|TRMA_CAMHC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|153803983|gb|ABS50990.1| tRNA (uracil-5-)-methyltransferase [Campylobacter hominis ATCC
           BAA-381]
          Length = 357

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 208/357 (58%), Gaps = 19/357 (5%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y  +++ K D L+     F    ++IF+S+  ++R  AEF IWH+  D+++ M    + E
Sbjct: 18  YNDEISFKTDFLKSEFKEFYQGEIEIFKSDEWNFRNHAEFGIWHEKGDVFYTM-RGNSNE 76

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           R++I+        I  +M +++  +R    L+ +LF I+++ ++ D  +  L+YH+ +  
Sbjct: 77  RVKIETCPKMDKKIVEMMPKLLQNLRENKNLKERLFGIEFIATKFD-FMAILLYHKDI-- 133

Query: 130 AWRECAIRLRDALH--ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
                   ++D L   A    I++  R+    +    + + E++    +  IYR   ++F
Sbjct: 134 ------FNIKDDLAKLAEILDIKISARSRGKFLNFGGEILREKV----QNFIYRFNADAF 183

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            Q N  +N  M+ +VL A K  + DLLE+YCG+GNF+L LA  F ++LA EI+K S++ A
Sbjct: 184 FQSNTKVNEKMILFVLNAVKNGK-DLLEMYCGHGNFTLPLASEFGKILANEISKNSIKNA 242

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           R N  + + +N+  VRMS+KE   A    REFNRLKDIDI  + F  + VDPPR+G++  
Sbjct: 243 REN--SKNKDNINFVRMSAKELIDAFNGVREFNRLKDIDITDFDFSHVLVDPPRAGIEPE 300

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  +Q + +I+YISCNP SL ++L IL  TH I + ALFDQF +T H+ECGV+L +
Sbjct: 301 VLDFIQNFKNIIYISCNPASLKQNLQILCETHKITKFALFDQFVHTEHIECGVVLQK 357


>gi|32266192|ref|NP_860224.1| tRNA (uracil-5-)-methyltransferase [Helicobacter hepaticus ATCC
           51449]
 gi|50401508|sp|Q7U326|TRMA_HELHP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|32262242|gb|AAP77290.1| tRNA (uracil-5-)-methyltransferase TrmA [Helicobacter hepaticus
           ATCC 51449]
          Length = 404

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 199/357 (55%), Gaps = 25/357 (7%)

Query: 28  FQVPN----LQIFRSEPIHYRMRAEF---HIWHDGDDLYHIMFDQQTKERMRID---YFM 77
           FQ P     +++F S    +R RAEF   H++ +   L   M       R+ I      +
Sbjct: 44  FQYPTNPLAIEVFASPQEGFRARAEFRFSHVFQNKSGLDFAMNAFGYNHRVPIKKCPILL 103

Query: 78  PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137
           P    I  L++  + T  L   L  KL+  + L+S  ++ I+TLIYH+ LD  W   A++
Sbjct: 104 PTLQDIMPLLLHYLNTYDL---LNHKLYACNLLSSLQNEIIITLIYHKSLDSHWESLALK 160

Query: 138 LRDAL-HARKYQIQLIGRANKTKICLDRDYVDERLTVAG-----RTLIYRQIENSFTQPN 191
           ++  L +     I +IGR+   K  L  D + E LT+       RT  + + E+ F QPN
Sbjct: 161 IQKELEYTLNTNIHIIGRSKNHKHILSNDIICEHLTLFANTPKERTYTFFKQESRFCQPN 220

Query: 192 AGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
             IN  MLE++++A   I       D+LELYCG+GNF++ LA  F  + A E+ K ++  
Sbjct: 221 PFINTQMLEFIVSALSSIYTPQTPCDMLELYCGSGNFTIPLASIFRHIFATEVVKSAITL 280

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-D 305
            + N+A N++ N+   R+++ E  QA+R+ER F RLK+ID+ ++ F  + +DPPRSG+ +
Sbjct: 281 LQKNMAKNNIENIIPARLNAFESIQALRKERVFFRLKNIDLDAFAFDCVLIDPPRSGVGE 340

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +  +  +Q +  I+Y+SCNP +L  DL ILS +H + R  LFDQFP+T H EC V+L
Sbjct: 341 EEVLYFLQNFNTIIYVSCNPHTLLNDLRILSQSHYVMRFGLFDQFPHTYHRECIVIL 397


>gi|291276449|ref|YP_003516221.1| tRNA (uracil-5)-methyltransferase [Helicobacter mustelae 12198]
 gi|290963643|emb|CBG39475.1| tRNA (uracil-5)-methyltransferase [Helicobacter mustelae 12198]
          Length = 401

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 116/277 (41%), Positives = 165/277 (59%), Gaps = 14/277 (5%)

Query: 95  RLEPLLRA-----KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           +L PLL+      KL+ I+ L     Q I+++IYHR L+D+W   A  L     A    +
Sbjct: 130 QLPPLLQPEILSYKLYAINLLGV--GQGILSMIYHRKLEDSWEHAARNL-----AHSLGV 182

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG- 208
            +IGR+   KI +  D  +  L VAGR LIY   E +F+QPN  IN  ML ++LA  +  
Sbjct: 183 SIIGRSKNQKILIGSDLQESSLNVAGRKLIYLHKEGNFSQPNPFINEKMLNFILACLQDH 242

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            + DLLELYCG+GNFS+ LA  F+RV A E+ K ++     N   N + N+   R+S  E
Sbjct: 243 PRRDLLELYCGSGNFSIALADSFERVFATEVVKSAIPVLLENARRNDITNLTAARLSGLE 302

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHILYISCNPDS 327
             QA+  ER+F RL+ +D+  + F  I VDPPRSG+ D   +  +Q +P+I+Y+SCNP S
Sbjct: 303 TMQALSFERDFFRLRGVDLRDFNFSHILVDPPRSGIGDIKMLHFLQKFPYIIYVSCNPHS 362

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L RD  ILS +H +   ALFDQFP+T H+E  ++L +
Sbjct: 363 LKRDFLILSQSHKVIHSALFDQFPHTHHVESIMILQK 399


>gi|224438395|ref|ZP_03659322.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313144837|ref|ZP_07807030.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313129868|gb|EFR47485.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 395

 Score =  213 bits (541), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 129/378 (34%), Positives = 206/378 (54%), Gaps = 22/378 (5%)

Query: 10  YEQQLAEKVDRLRQMMLA------FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           YE+QL  K+ + +Q   +      F   NL +  S    +R RAEF  + + + ++  M 
Sbjct: 18  YEKQLESKLKQTQQEFSSLFSSNGFSSANLSVHNSVEWGFRARAEFRFYTEQNRIHFAMS 77

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSDQAIVTLI 122
           +++   R  I        +I   M  ++ ++  +  LR K++  ++L + +S + I++LI
Sbjct: 78  NREKNHRTPITQCPILLPIIQKAMPLVIESLEADETLRTKVYACNFLANIESQEIIISLI 137

Query: 123 YHRLLDDAWRECAIRLRDALH-ARKYQIQLIGRANKTKICL-DRDY---VDERLTVAG-- 175
           YH+ LD  W + A  +RD LH A      +IGRA   KI + D DY   V E L +    
Sbjct: 138 YHKRLDSIWEQKAQNMRDRLHTALNATAHIIGRAKNQKILVGDFDYDSCVRESLRLFADS 197

Query: 176 ---RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI----QGDLLELYCGNGNFSLVLA 228
              +   + + E+SF+QPN  IN  MLE+V+   K +      D+LELYCG GNFS+ L+
Sbjct: 198 KQKQNYTFFKQESSFSQPNPFINTKMLEFVITHLKALYPQPDNDMLELYCGGGNFSIALS 257

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
             F ++LA E+ K ++   + N+  N   N+  VR+++ E   A+  EREF RL+ IDI 
Sbjct: 258 GVFRQILATEVVKSAISLLQQNMEQNFCENITPVRLNALETQVALSGEREFFRLRGIDIK 317

Query: 289 SYRFKTIFVDPPRSGLDDATV-GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
            + F  + +DPPRSG+++  +   +Q +  I+Y+SC P +L +DL  L  +H I    LF
Sbjct: 318 RFSFDCVLIDPPRSGVNELKILHFLQQFNTIVYVSCKPHTLLQDLQTLIQSHNILHFGLF 377

Query: 348 DQFPYTRHMECGVLLVRK 365
           DQFP+T H EC V+L +K
Sbjct: 378 DQFPHTHHRECIVILRQK 395


>gi|330873515|gb|EGH07664.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 189

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/189 (53%), Positives = 130/189 (68%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           T  YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA
Sbjct: 1   TFSYRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLA 60

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            EI+K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++F
Sbjct: 61  TEISKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVF 120

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           VDPPR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HM
Sbjct: 121 VDPPRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHM 180

Query: 357 ECGVLLVRK 365
           E GVLLVR+
Sbjct: 181 ESGVLLVRR 189


>gi|1717750|sp|P55134|TRMA_NEIGO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|551910|gb|AAA63404.1| ORF [Neisseria gonorrhoeae]
          Length = 225

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 147/230 (63%), Gaps = 7/230 (3%)

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           +R D F   S  +N LM E++A       LR   + +++L++ S + +VT+IYH+ LDD 
Sbjct: 1   IRCDRFDAASEAVNCLMPELIAVAAQSAELRNHWYAVEFLSTLSGEMLVTMIYHKRLDDE 60

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W + A  L+  L      I +IGR+   KI L +DYV E L V  R   YRQIE SFTQP
Sbjct: 61  WMKAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQIEGSFTQP 115

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           NA +   MLEW  A  K   GDLLELYCGNGNF+L L+R+F +VLA EI+K SV AA++N
Sbjct: 116 NAAVCRKMLEWACARRKAWGGDLLELYCGNGNFTLPLSRYFRQVLATEISKTSVSAAQWN 175

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVD 298
           I AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVD
Sbjct: 176 IEANWIGNIKIARLSAEEFTEAYTGKREFTRLKESGIVLTDYAFSTIFVD 225


>gi|121730717|ref|ZP_01682830.1| cell division protein FtsY [Vibrio cholerae V52]
 gi|121627713|gb|EAX60357.1| cell division protein FtsY [Vibrio cholerae V52]
          Length = 209

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/198 (47%), Positives = 138/198 (69%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E
Sbjct: 11  YQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L +
Sbjct: 71  KYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  L+  L+   + + LIGRA K K+ LDRDYV E L V G+  +Y+Q+ENSFTQ
Sbjct: 131 EWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATK 207
           PNA +   MLEW +  T+
Sbjct: 191 PNAKVAEKMLEWAVDCTQ 208


>gi|157056867|gb|ABV02450.1| hypothetical protein [Arcobacter nitrofigilis DSM 7299]
          Length = 179

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/178 (51%), Positives = 125/178 (70%), Gaps = 1/178 (0%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N+ M+EWVL   +  + DL ELYCG GNF++ L+  F++VLA EI+K S+ +
Sbjct: 1   FTQPNTKVNIKMIEWVLNNIE-TKDDLCELYCGGGNFTIPLSTKFNKVLATEISKTSINS 59

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N   N++ N+  +RMS++EF +A+   REF RLKDI++  Y F TIFVDPPRSGLDD
Sbjct: 60  ALLNCELNNITNIDFIRMSAEEFVEALNSVREFRRLKDINLSDYNFSTIFVDPPRSGLDD 119

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            T  +V+ Y  I+YISCNP++L RDL  L  +H I   +LFDQF Y+ H+E GV+L +
Sbjct: 120 TTRELVKNYEQIIYISCNPETLHRDLKELIKSHQILNFSLFDQFSYSGHIETGVILKK 177


>gi|297171088|gb|ADI22100.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [uncultured
           Planctomycetales bacterium HF0200_11L05]
          Length = 298

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 105/283 (37%), Positives = 170/283 (60%), Gaps = 12/283 (4%)

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
           LI+ L I+++++  +    + KLFQ +   S+S + IV+LIYH+ LD  W + A +L   
Sbjct: 23  LISQLKIKLLSSDEM----KEKLFQTEIQVSRSGEGIVSLIYHKPLDANWIKKAKKLSSE 78

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           + A      ++GR+ K K+ + +D+V E      + +     E  F+QPN  I   ML W
Sbjct: 79  IGA-----SIVGRSRKQKLVVGKDFVTETYDAHIKKIKVNLYEQCFSQPNPYICDEMLAW 133

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V + +K +   + EL+CG G F+++    + RVLA E ++PSV+A   N+  N + NV+ 
Sbjct: 134 V-SKSKKLHHHVTELHCGVGTFTILXXXXYSRVLATENSRPSVKALEKNMHINSIENVET 192

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHIL 319
            RMS  E  +A+ ++REFNR+K I++  +R   +F+DPPRSGLD  ++ +++   Y  I+
Sbjct: 193 ARMSGLETLEALIKKREFNRMKHINLIDFRKDVLFLDPPRSGLDVDSINLIKQLKYKEII 252

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           Y+SC   SL  +L  L T + +++ ALFDQFPYT H+E GV+L
Sbjct: 253 YLSCGFKSLKSNLKELLTNYKVKKAALFDQFPYTDHIETGVIL 295


>gi|270700645|ref|ZP_06223015.1| tRNA (Uracil-5-)-methyltransferase [Haemophilus influenzae HK1212]
 gi|270315913|gb|EFA27990.1| tRNA (Uracil-5-)-methyltransferase [Haemophilus influenzae HK1212]
          Length = 144

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 110/144 (76%)

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           FQIDYL++ S++ IV+L+YH+ L + W   A  L+D L  + + +Q+IGRA+K KIC ++
Sbjct: 1   FQIDYLSTLSNKIIVSLLYHKTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQ 60

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           DYVDE L V GR  +YRQ+ENSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS
Sbjct: 61  DYVDEVLPVNGRNYVYRQVENSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFS 120

Query: 225 LVLARHFDRVLAVEIAKPSVEAAR 248
           + LA++F +VLA EIAKPSV AA+
Sbjct: 121 IALAQNFRKVLATEIAKPSVAAAQ 144


>gi|302841023|ref|XP_002952057.1| hypothetical protein VOLCADRAFT_118051 [Volvox carteri f.
           nagariensis]
 gi|300262643|gb|EFJ46848.1| hypothetical protein VOLCADRAFT_118051 [Volvox carteri f.
           nagariensis]
          Length = 454

 Score =  180 bits (456), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/157 (54%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q DLLELYCGNGNF++ LA++F RV+A E+AK SVEAAR+N+ AN V+NV + RM+S+EF
Sbjct: 298 QDDLLELYCGNGNFTVPLAQNFRRVVATEVAKSSVEAARFNLEANGVSNVFLARMASEEF 357

Query: 270 TQAMRREREFNRLKDIDI-HSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328
            + MR      RL+ +      R +TI VDPPR+GLD  TV +++ +  I+YISCNP++L
Sbjct: 358 AETMRSRGSRRRLEGLGPWEELRLRTILVDPPRAGLDGFTVELLKEFDRIVYISCNPETL 417

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +L  ++TTH I R A FDQFPYT H+ECGV L R+
Sbjct: 418 HANLRAIATTHKIARFAAFDQFPYTHHLECGVYLTRR 454



 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 106/214 (49%), Gaps = 31/214 (14%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYR-----MRAEFHIWHDGDDLYHIM 62
            QY  QL  KV +L+++   F  P+L++F S P         ++           L H+ 
Sbjct: 33  SQYGSQLQAKVFKLKELFREFDPPDLEVFESPPRRAPPQPPPLKTALKAPLPQPALRHL- 91

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE----PLLRAKLFQIDYLTSQSDQAI 118
              Q  +R  ++        +N    E+M  +R E    P LR +LFQ+++ T+ +  A+
Sbjct: 92  ---QQWQRRHVE--------VN----ELMEAVRQECIQCPELRNRLFQVNFHTTLAGDAM 136

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKY------QIQLIGRANKTKICLDRDYVDERLT 172
           VTL+YHR L   W   A RLRD L A         +  +IGR+ K K+ LD  +V ERL 
Sbjct: 137 VTLLYHRKLGAEWTAAAERLRDVLAATPTAAAAGRRPHVIGRSRKQKVDLDASFVLERLR 196

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
           V GR  + +Q+E +F+QPN  +  HML W L  T
Sbjct: 197 VGGREYVQKQVEGAFSQPNGTVCQHMLGWALDVT 230


>gi|53729021|ref|ZP_00134290.2| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 132

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/132 (62%), Positives = 103/132 (78%)

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +LA EI+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   
Sbjct: 1   MLATEISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCN 60

Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
           TIFVDPPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT
Sbjct: 61  TIFVDPPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYT 120

Query: 354 RHMECGVLLVRK 365
            H+E GV L+RK
Sbjct: 121 HHVESGVWLIRK 132


>gi|257460625|ref|ZP_05625726.1| trna (uracil-5-)-methyltransferase
           (trna(m-5-u54)-methyltransferase) [Campylobacter
           gracilis RM3268]
 gi|257441956|gb|EEV17098.1| trna (uracil-5-)-methyltransferase
           (trna(m-5-u54)-methyltransferase) [Campylobacter
           gracilis RM3268]
          Length = 519

 Score =  169 bits (427), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 105/154 (68%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           DLLELYCG+GNF++ LA  F+RVLA EI+K S+  AR N   N V N + VR+S+ E   
Sbjct: 365 DLLELYCGHGNFTIPLAAKFNRVLASEISKSSIANARINCELNGVCNAQFVRLSADELMS 424

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
           A  R REF RLK IDI  Y F  + +DPPR+GL+ + +  ++ + +++YISCNP +L  +
Sbjct: 425 AFARRREFERLKGIDIFGYDFSHVLIDPPRAGLEPSVIDFIKNFENLIYISCNPQTLFEN 484

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L  L  TH + R A+FDQF +T H+ECGVLL R+
Sbjct: 485 LRSLCATHEVRRFAIFDQFAHTAHIECGVLLKRR 518



 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 14/193 (7%)

Query: 38  SEPIHYRMRAEFHIWHD----GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT 93
           S+P +YR+RAEF IWHD      DL + M   ++K ++ I+     +L I  LM  ++  
Sbjct: 46  SQPQNYRIRAEFGIWHDIWHSAFDLAYTMGGARSK-KILINECPKVALPIANLMPRLLEV 104

Query: 94  IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153
           +R    L+ KLF +++++  S   + TL+YH+ L +  +E    L     A K  I+++ 
Sbjct: 105 LRRSEALKEKLFGVEFISCASG-ILATLLYHKRLGEREQEAICEL-----AGKLGIRVMA 158

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGD 212
           RA   K+      + + L V  R   +R  EN+F QPN G+N  M+ W  +    G +G 
Sbjct: 159 RARGQKLLSGELSLTDELCVDERVYKFRFGENAFIQPNRGVNEKMIAWARSCVDFGKEG- 217

Query: 213 LLELYCGNGNFSL 225
            + + C   NF++
Sbjct: 218 -MGVVCAAQNFAV 229


>gi|213419975|ref|ZP_03353041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 137

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/131 (60%), Positives = 96/131 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 7   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 66

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 67  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 126

Query: 125 RLLDDAWRECA 135
           + LD+ WRE A
Sbjct: 127 KKLDEEWREAA 137


>gi|213161654|ref|ZP_03347364.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 102

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 83/102 (81%)

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
           M+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGLD  T  MVQAYP ILYISC
Sbjct: 1   MAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGLDSETEKMVQAYPRILYISC 60

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  +
Sbjct: 61  NPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTAR 102


>gi|255073729|ref|XP_002500539.1| predicted protein [Micromonas sp. RCC299]
 gi|226515802|gb|ACO61797.1| predicted protein [Micromonas sp. RCC299]
          Length = 1143

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 128/450 (28%), Positives = 197/450 (43%), Gaps = 121/450 (26%)

Query: 34   QIFRSEPIHYRMRAEFHI-WHD------------------GDDLYHIMFDQQTKERMRID 74
            ++F S P+++R R  F + W D                  G  L + M+++  K  + I 
Sbjct: 696  EVFPSPPLNFRSRCRFQVMWEDAPVTAESTGITPGESVEPGRRLSYRMWNK-GKPTVPIT 754

Query: 75   YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA--IVTLIYHRLLDDAWR 132
             F      I  LM  ++      P L   L  I +L S+  +   +VT++Y R +D+AW+
Sbjct: 755  EFPMALREIEELMPAVLREAEAHPELGDGLQAIHFLASRGIRGGMLVTMVYGRPIDEAWK 814

Query: 133  ECA----IRLRDAL---HARKYQ------------------------IQLIGRANKTKIC 161
              A     RL+ A+     R Y                         + ++GR+  T+I 
Sbjct: 815  MAAEGPRARLKAAMVDIRERVYGGGDDDGFDGFAGPRGDDEELDATALNILGRSRGTQIV 874

Query: 162  L-DRDYVDERLTVA-GRTLIYRQIENSFTQPNAGINVHMLEWVL--AAT----------- 206
            + D  +V E L +  GR L YRQ E +F+ PN+ +    L+W+   AAT           
Sbjct: 875  VGDACHVFETLALRDGRRLRYRQAEGAFSNPNSFMAESTLDWLCDCAATTVREALGGTSE 934

Query: 207  ---KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
               +     LLELY GNGN ++ LA++FD V AVE++    EAAR N+  N V N K++ 
Sbjct: 935  HSAEAAPPSLLELYSGNGNHTVALAKYFDSVAAVELSGVLCEAARENLERNGVENAKVLH 994

Query: 264  MSSKEFTQAMRRER---EFNRLK-----------------------DIDIHSYRFKTIFV 297
              S+   + M R +   E  R+                        + DI++Y    + V
Sbjct: 995  SPSESVARGMLRRKKRHEEGRVGKAAMAAAATGAGDGSKRGDGSGMEFDINAY--DVVLV 1052

Query: 298  DPPRSGLDDATVGMVQAYPHILYISCNP----------------------DSLCRDLSIL 335
            DPPR+GLD  T+ +V  +  +LYISC+P                      +   +  S L
Sbjct: 1053 DPPRAGLDPDTLDLVSRFDVVLYISCDPRKGLLENAVGPHAARALDTGEFEGEFKGWSGL 1112

Query: 336  STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            + TH + R A+FD FPYTRH+ECG   VR+
Sbjct: 1113 ARTHDLVRFAVFDHFPYTRHIECGACFVRR 1142


>gi|167533187|ref|XP_001748274.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773394|gb|EDQ87035.1| predicted protein [Monosiga brevicollis MX1]
          Length = 401

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 149/290 (51%), Gaps = 22/290 (7%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD-AWRECAIRLR 139
           LL+ A +  + +  RL    R+  F +    + SD +++ L+Y   LD+  WRE A   R
Sbjct: 116 LLMRAFLEHLASDDRLAKSCRSLNFHV----TLSDDSMLALVYEEPLDEVGWREAAEACR 171

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS-FTQPNAGINVHM 198
            AL        ++GRA K  I L R +V ER  +     +Y+Q E S F+ P+A + +  
Sbjct: 172 TALGLGT----IVGRAKKQCIALPRTHVLERFPLQPGLDVYQQQEESIFSNPSAPMCLQT 227

Query: 199 LEWVLAATKGIQG---DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++W++   +   G   +LLELY G+G ++  +   F  VL+VEI +  VEAAR N+  NH
Sbjct: 228 MQWLVEVARQFGGTDLNLLELYSGSGTYTPAMCSVFAHVLSVEIQRTLVEAARRNLELNH 287

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             +   V  +  EF + + R RE            R+  + +DPPR GLDD T   +  +
Sbjct: 288 CESRATVHRAPVEFCRRLLRSREHE--------GRRYDAVLLDPPRDGLDDFTRSQLHNF 339

Query: 316 PHILYISCNP-DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             ++ ISC+P   L  D   L TTH + R+ + D FP TRH+E  V+ VR
Sbjct: 340 EVVMLISCSPLRKLILDAEALHTTHRLARMVILDHFPGTRHLEAAVVFVR 389


>gi|308798903|ref|XP_003074231.1| tRNA (ISS) [Ostreococcus tauri]
 gi|116000403|emb|CAL50083.1| tRNA (ISS) [Ostreococcus tauri]
          Length = 351

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 166/361 (45%), Gaps = 21/361 (5%)

Query: 13  QLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
            L  KV RLR        P+   +I  S    +R R  F +  D                
Sbjct: 2   SLENKVARLRVAFADVLTPSTSFEIAESANSGHRSRCRFQVVRDDAGALKYALWANGGPN 61

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
             ++ F      I  +M  ++            L    +L S +   ++  +   L +D 
Sbjct: 62  AIVETFPDAVGAIQDVMKGVLRAAERRKACERGLEAAHFLASVASGRVLVTLVEMLANDG 121

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV-AGRTLIYRQIENSFTQ 189
                    D + A+   ++L+GR+    +    D V+E   +  G TL Y   E SF+ 
Sbjct: 122 ---------DGVFAK---VELMGRSKGVVVKTGSDRVEETYELRDGTTLRYHHAEGSFSN 169

Query: 190 PNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           PN  I +  +E++ A    I GD      LELYCG  N S  LA  FDR++AVEI    V
Sbjct: 170 PNRAITIATMEFLRACACEIVGDGKNVSALELYCGCANHSCALATIFDRIVAVEINPSLV 229

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AAR ++  N ++NV++V   S+   ++M   + F  ++   + S  F  + VDPPR+GL
Sbjct: 230 TAARESLEMNEIDNVEVVLADSQNVARSMMAGK-FVDVQGKALSSTDFDVVLVDPPRAGL 288

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T+ +V  + H+LY+SC P++L +++    +TH +E+  + D FP TRH+E  V + R
Sbjct: 289 DPDTLRLVSTFDHVLYVSCGPENLLQNIRNGLSTHVVEKFIVLDHFPNTRHIEVAVYMRR 348

Query: 365 K 365
           +
Sbjct: 349 R 349


>gi|183179753|ref|ZP_02957964.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae
           MZO-3]
 gi|183013164|gb|EDT88464.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae
           MZO-3]
          Length = 105

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 79/104 (75%), Gaps = 2/104 (1%)

Query: 264 MSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           MS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  T  MVQ Y  ILYI
Sbjct: 1   MSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYI 60

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK
Sbjct: 61  SCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 104


>gi|145340680|ref|XP_001415448.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575671|gb|ABO93740.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 308

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 156/311 (50%), Gaps = 10/311 (3%)

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD-QAIVT 120
           M+D+     M +D F      I  +M  ++        LR  L    +L   ++ + + T
Sbjct: 1   MWDRGAPTVM-VDDFPMARRAIRDVMGRLLREASAVAALRDGLEATHFLCGVAEGKVLAT 59

Query: 121 LIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA-GRTL 178
           L+Y   ++ DAW   A RL  A       ++L+GR          D+V E   +  G  L
Sbjct: 60  LVYSTPINVDAWTLAARRLL-ATKFDDVSLELMGRCKGVVAKTGDDFVWEEYELGDGSVL 118

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATK---GIQGDLLELYCGNGNFSLVLARHFDRVL 235
            Y+  E +F+ PN  I +  +E++  A K     +  LLELYCGN N +  LA  ++RV+
Sbjct: 119 TYKHTEGAFSNPNRTITIATMEFLRDAAKKKFSRRKMLLELYCGNANHTCALANLYERVV 178

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AVE+    V+AAR ++  N V+NV I+   S+   +++ R + F       I    F  +
Sbjct: 179 AVEVNPVLVDAARESLDMNSVSNVDIILSPSESVAKSLLRGK-FKDAAGATIRVEDFDAV 237

Query: 296 FVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTR 354
            VDPPR+GLD  T+ +V    H+LY+SC P++L  ++   L  TH ++   + D FP+TR
Sbjct: 238 LVDPPRAGLDADTLALVSQIDHVLYVSCGPENLLANIRDGLDATHAVDDFIVLDHFPWTR 297

Query: 355 HMECGVLLVRK 365
           H+E  V + ++
Sbjct: 298 HIEVAVSMRKR 308


>gi|289807568|ref|ZP_06538197.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 91

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/91 (70%), Positives = 78/91 (85%)

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EIAKPSV AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFV
Sbjct: 1   EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFV 60

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSL 328
           DPPRSGLD  T  MVQAYP ILYISCNP++L
Sbjct: 61  DPPRSGLDSETEKMVQAYPRILYISCNPETL 91


>gi|297518334|ref|ZP_06936720.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli OP50]
          Length = 86

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/86 (72%), Positives = 71/86 (82%)

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339
           NRL+ ID+ SY+ +TIFVDPPRSGLD  T  MVQAYP ILYISCNP++LC++L  LS TH
Sbjct: 1   NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTH 60

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +ERLALFDQFPYT HMECGVLL  K
Sbjct: 61  KVERLALFDQFPYTHHMECGVLLTAK 86


>gi|255080342|ref|XP_002503751.1| predicted protein [Micromonas sp. RCC299]
 gi|226519018|gb|ACO65009.1| predicted protein [Micromonas sp. RCC299]
          Length = 512

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 130/455 (28%), Positives = 196/455 (43%), Gaps = 92/455 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VP--NLQIFRSEPIH-YRMRAEFHIWHD-GD 56
           S T   D Y + LA+K  R+R++      +P   ++++ S     YR R  F I  D G 
Sbjct: 58  SDTSTNDAYLELLADKTKRVRELFHGGGFIPARGVEVYASPKTRGYRSRCRFAIARDDGG 117

Query: 57  DLYHIMFDQQ---------TKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRA-- 102
            L + +F+             E    D F   S  I  +M   +E++      P  RA  
Sbjct: 118 RLRYALFENGEVVMLGDDDADEDGDTDVFPWASEPIARVMPVLLELLNDADGSPNARALT 177

Query: 103 -KLFQIDYLTSQSDQAIVTLIYHRLLDDA-----------------WRECAIRLRDALHA 144
             L  + +L S+  + +VTL ++R+ D+A                 W + A  L  +L +
Sbjct: 178 TGLSAVGFLASRGGEVVVTL-WNRMTDNAGDTNTAGDANTAIGDAEWNDDANGLLSSLRS 236

Query: 145 RKYQIQLIGRANKTKICLDR-DYVDERLTVAG---------------------------- 175
                 +  R  KT +  +  ++V E +TV G                            
Sbjct: 237 VGVTGVVTRRRRKTLVASNGVNHVWEPMTVPGDIPGDIEIIAAVPGDIPGDVGTGTTRSQ 296

Query: 176 -RTLIYRQIENSFTQPNAGINVHMLEWVLAAT---------KGIQ-GD--------LLEL 216
            R L Y+Q+E +F+ PN  +      W+  A          KG+  G         LLEL
Sbjct: 297 SRHLRYKQVEGAFSNPNGDVAEVTARWLHDACEDILLARNKKGLGLGSTPLSTLPWLLEL 356

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCGNGN ++ L+  F RV AVEI    V AA  N A N V N  +  + ++ F +A    
Sbjct: 357 YCGNGNHAVSLSPRFGRVTAVEIEPRLVAAANENFAVNGVANATVTALPAEVFARARTGT 416

Query: 277 REFNRLKDIDI-----HSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
                L   D+      ++R  T+ VDPPR+GLD+ T+ +V  +  +LY++C+  SL RD
Sbjct: 417 GSRGLLDGDDVDQLLADAWRDGTVLVDPPRAGLDEDTLALVAGFGSVLYVACDCASLARD 476

Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L S L  TH + R+ALFD FP +R  E  V L  K
Sbjct: 477 LKSTLGKTHEVRRMALFDHFPGSRFCEVVVWLEAK 511


>gi|303277405|ref|XP_003057996.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460653|gb|EEH57947.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 484

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/248 (35%), Positives = 123/248 (49%), Gaps = 29/248 (11%)

Query: 141 ALHARKYQIQ-LIGRANKTKICLDRDYVDERLTVA-GRTLIYRQIENSFTQPNAGINVHM 198
           AL AR   +    G A+ +       YV E L +  G    Y+  E +F+ PNA +  H 
Sbjct: 229 ALSARVVPVPGAAGDASPSPSRPGETYVVETLRLDDGDAFAYKNAEGAFSNPNAWMAEHT 288

Query: 199 LEWV------LAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           L W+      +AA +G  G  LLELYCG GN ++ LA  F RV+AVEI++   +AAR N+
Sbjct: 289 LTWLRSCARAIAAERGGAGASLLELYCGCGNHTVALAGMFTRVVAVEISEELCDAARDNL 348

Query: 252 AANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             N +   V IV   S   +    RE        + +    F  + VDPPR+GLD  T+ 
Sbjct: 349 RRNGIEEGVSIVHAPSASVS----RELLRGGGGGLGLGLDAFDVVLVDPPRAGLDADTLA 404

Query: 311 MVQAYPHILYISCNPDSLCRDLSI---------------LSTTHTIERLALFDQFPYTRH 355
           +V+ + ++LYISC+P SL RD                  LS TH + + A+FD FPYTRH
Sbjct: 405 LVKRFEYVLYISCDPASLARDAMGGEEGNGNGKGGGTLRLSDTHDVVKFAVFDHFPYTRH 464

Query: 356 MECGVLLV 363
            E G    
Sbjct: 465 AEVGACFA 472


>gi|323452203|gb|EGB08078.1| hypothetical protein AURANDRAFT_64406 [Aureococcus anophagefferens]
          Length = 918

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 116/229 (50%), Gaps = 20/229 (8%)

Query: 149 IQLIGR-ANKTKICLDRDYVDERLTVA-GRTLIYRQIENSFTQPNAGINVHMLEWVLA-- 204
           + ++GR    T +    D+V + L +A GR   Y   E SF+ P    N   L+W++A  
Sbjct: 595 VHVVGRFKGSTLLSGTNDFVVDALDLADGRRPRYEFPEGSFSHPCGSANERSLDWLVARV 654

Query: 205 ----ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
               A  G   +LLELYCG GN ++ LA    R +AVE+      AA+ N+  N V N  
Sbjct: 655 DNIRANLGRAPNLLELYCGCGNHTVALAPATGRTVAVEVDARLTAAAKRNLDRNGVANAT 714

Query: 261 IVR---MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           IV     +S+   +A+R +R  +           F  + VDPPR GLD AT   + AY H
Sbjct: 715 IVTDTVGASRGVHRALRAKRSGDVC---------FDLLLVDPPRRGLDAATRTCLAAYDH 765

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +L++SCNP +L  DL  L  TH +   A+ D FP T H EC V   R+P
Sbjct: 766 VLFVSCNPAALAEDLKALEPTHAVAAAAVVDGFPGTPHCECLVHFARRP 814


>gi|96865|pir||B37321 tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35) - Salmonella
           typhimurium (fragment)
          Length = 111

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/106 (59%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMF 63
           L  +QYE QLAEKV RL+ MM  F     ++F+  P+ HYRMRAEF +WHDGDDLYHIMF
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFQLMPVSHYRMRAEFRLWHDGDDLYHIMF 65

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
           DQQT  R+R+D F   S LIN LM  M+A +R    LR KLFQIDY
Sbjct: 66  DQQTFCRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDY 111


>gi|326428288|gb|EGD73858.1| hypothetical protein PTSG_12338 [Salpingoeca sp. ATCC 50818]
          Length = 440

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 137/313 (43%), Gaps = 70/313 (22%)

Query: 109 YLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           +  + +D A++T IY   ++D   WR  A RL     +RK+   L+ R+   ++ +  DY
Sbjct: 142 FHCTTTDDAMITFIYDAAIEDEGRWRHEAQRL-----SRKWGCHLLARSKGQRLVVGNDY 196

Query: 167 VDERLTV-------------------------------------------------AGRT 177
           V+E LT+                                                 A   
Sbjct: 197 VEEVLTLPPLNDDNTGGTSYPGSSRRQADTTALTTTTTTTTTSNSQSGTTARSSGAAALR 256

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDRV 234
           ++ RQ E +F+ PN  I +  + W+      ++ D   +LELY G G ++ +L   FD V
Sbjct: 257 IVLRQPEGAFSNPNPYICLRTMLWLRQRAALVRADVRHMLELYAGAGTYTPILGHLFDAV 316

Query: 235 LAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
             VEI+   V AA++N  AN V+  V++VR       +A+R     + +         F 
Sbjct: 317 TTVEISTALVAAAQHNATANGVDERVRVVRAP----VEAVR-----HIISSASHEGVTFD 367

Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNP-DSLCRDLSILSTTHTIERLALFDQFPY 352
            + +DPPR+G D  T+  +  Y HI+ +SCNP  +  RDL +L  TH I      D FP 
Sbjct: 368 AVMLDPPRAGADAFTISCLGQYKHIILLSCNPLHTFPRDLRVLCRTHRIASAIALDHFPQ 427

Query: 353 TRHMECGVLLVRK 365
           T H E  + L+R+
Sbjct: 428 TPHFEAAMHLIRR 440


>gi|303280081|ref|XP_003059333.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459169|gb|EEH56465.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 459

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 104/211 (49%), Gaps = 26/211 (12%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWV--------LAATKGIQG------------DLLEL 216
           TL Y+Q+E +F+ PN  +       V        + A K   G             L EL
Sbjct: 250 TLTYKQVEGAFSCPNGDVAEETARSVVTEIAYERIGAGKTKNGFSEDVTEFPTLSSLTEL 309

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCGNGN +  LA +FD V AVEI      AA  N  AN V N  +  + ++ F      E
Sbjct: 310 YCGNGNHTCSLAPYFDEVSAVEIDPRLCAAAAENFKANGVANATVRALPAEAFAA----E 365

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS--I 334
            E    K ++        + VDPPR+GLD+ T+ + + +  I+YI+C+ ++L RDL    
Sbjct: 366 TEGEDAKKLNGALNTEGVVLVDPPRAGLDEKTLALARKFRSIIYIACDFNALHRDLEERG 425

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L  TH ++ LALFD FP++  +E  V L R+
Sbjct: 426 LRRTHVVKELALFDHFPFSAFVEVAVRLERR 456


>gi|213029277|ref|ZP_03343724.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 100

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 65/91 (71%)

Query: 5  LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
          L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 6  LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65

Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIR 95
          QQTK R+R+D F   S LIN LM  M+A +R
Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVR 96


>gi|330883013|gb|EGH17162.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 171

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 91/167 (54%), Gaps = 6/167 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+ MF      
Sbjct: 10  YDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDNR 69

Query: 70  RMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
              +   +P  S  INALM  +       P L  KLFQ+D+LT+ +  A++T+ YHR LD
Sbjct: 70  TPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMITMCYHRPLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             W+  A        A +  + LIGR+   K+ + +DYV E+L VAG
Sbjct: 130 AEWQAAA-----EQLAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAG 171


>gi|192362323|ref|YP_001983036.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cellvibrio japonicus
           Ueda107]
 gi|190688488|gb|ACE86166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cellvibrio japonicus
           Ueda107]
          Length = 485

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 160/351 (45%), Gaps = 42/351 (11%)

Query: 33  LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA 92
           L   RSE + YR RA   +W++ D    + F QQ  +R  +      S+L+ AL   ++ 
Sbjct: 158 LPPLRSESLGYRSRARLGVWYEADSSVTLGFRQQ--QRKTLTNIESCSVLLPALN-RLIG 214

Query: 93  TIR--LEPLLRAK-LFQIDYLTSQSDQAIV---TLIYHRLLDDAWRECAIRLRDALHARK 146
            +R  L+  +  K +  I+ + +QS  A++   T     L   A  E A R         
Sbjct: 215 PLRQWLQARVANKAVTHIELVAAQSGPAVIVRHTKPLVALQRQALAELAQR-------ES 267

Query: 147 YQIQLIGRANKTKICLDRDYVDERLT--VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
            Q+ L    N+    L+   VD  L   VAG  L +      FTQ N  +N  M++  L 
Sbjct: 268 CQVWLEPNGNQGLTDLEGSPVDPHLVLDVAGLPLHFH--PQDFTQVNPAVNGRMVQQALE 325

Query: 205 ATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                  DL L+ +CG GNF+L +A    RV+ +E+ +P V  A+ N     ++N+    
Sbjct: 326 LLAPGTNDLVLDFFCGMGNFTLPMASRVARVIGLEVVEPMVTRAQANATRLGLDNL---- 381

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--------GMVQAY 315
               EF +A   + +  RL+ +     +   I +DPPR G  +           G + A 
Sbjct: 382 ----EFLKADLSQMDSPRLRQL---CSQASAILLDPPRDGAKELVTQLRDLRRKGQLSAQ 434

Query: 316 PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             I+Y+SCNP +L RD ++L+   + ++ L + D FP+T H+E   L + K
Sbjct: 435 -RIVYVSCNPATLARDAALLAEAGYGLDALGVMDMFPHTSHVESMALFLYK 484


>gi|552024|gb|AAA27233.1| m-5-U54 transfer RNA methyltransferase [Salmonella enterica
          subsp. enterica serovar Typhimurium]
          Length = 102

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 65/92 (70%), Gaps = 1/92 (1%)

Query: 5  LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMF 63
          L  +QYE QLAEKV RL+ MM  F     ++F+  P+ HYRMRAEF +WHDGDDLYHIMF
Sbjct: 6  LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFQLMPVSHYRMRAEFRLWHDGDDLYHIMF 65

Query: 64 DQQTKERMRIDYFMPGSLLINALMIEMMATIR 95
          DQQT  R+R+D F   S LIN LM  M+A +R
Sbjct: 66 DQQTFCRIRVDTFPAASQLINTLMKAMIAGVR 97


>gi|219110143|ref|XP_002176823.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411358|gb|EEC51286.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 403

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 159/368 (43%), Gaps = 66/368 (17%)

Query: 43  YRMRAEFHIWH-----DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
           YR R  F I H     DG   Y +   +Q  E + I  F   +L I   M  ++A    +
Sbjct: 55  YRCRCSFQIVHGDMKSDGHLRYAV---RQNHEPVCITAFPVANLRIQRSMWNVLALFN-D 110

Query: 98  P-----LLRAKLFQIDYLTSQSDQ-AIVTLIYHRLLDD--AWRECAIRLRDALHARKYQI 149
           P      L+  L    + TS  +   +VTL Y   + D  AW   A  +   L       
Sbjct: 111 PEEQFGQLKQSLTSATFSTSWDETMCVVTLHYMNPVSDESAWETEAQNMCQRLEL----A 166

Query: 150 QLIGRANK---------TKICLDRDY-----------VDERLTVAGRTLI-YRQIENSFT 188
           QL GR+ K         T I  D  +           +++ LT + R  + Y + E++F 
Sbjct: 167 QLTGRSRKRILRTRNEGTTIICDTIWMERVGSNWNVSLEKTLTSSDRIAVHYNKPEDAFY 226

Query: 189 QPNAGINVHMLEWVLAATKGIQGDL-------LELYCGNGNFSLVLARH--FDRVLAVEI 239
            PN+    + LEW+L+    I  DL       LE+YCG G  ++ LA+     ++LA+E+
Sbjct: 227 HPNSRAMCNALEWMLSRIVLIVADLETLTPRLLEMYCGCGAHTIPLAKTGLLSKILAIEL 286

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            +  V A + NI  N +++  I  +S      + R E  F+              I VDP
Sbjct: 287 DERLVRACQQNILLNGIDSELIDMVSQDAGKWSQRCESSFD-------------IILVDP 333

Query: 300 PRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           PR GLD++   M     + H+LYISC  D+L RDL  L  +  +E   L D FP T  +E
Sbjct: 334 PRQGLDESVCQMATRGDFQHMLYISCGRDALVRDLERLGGSFAVENCTLLDLFPTTGAVE 393

Query: 358 CGVLLVRK 365
             V L RK
Sbjct: 394 SLVHLKRK 401


>gi|300814888|ref|ZP_07095119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300510978|gb|EFK38247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 428

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  SL +A    + L VEI + ++E AR N   N +   + +   S+E  + 
Sbjct: 284 IADLYSGVGTLSLEIASRKAQTLGVEIVEEAIEDARINAQKNKLQ-ARFICGKSEEILEK 342

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           ++++ +            +   I VDPPR G+D   V  +   +Y  I+YISCNP +L R
Sbjct: 343 IQKDEKI-----------KMDKILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLAR 391

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL IL   + +E++ +FD FPYT H+EC  L+ R  S
Sbjct: 392 DLKILKEKYKVEKVEIFDLFPYTSHVECIALIQRVKS 428


>gi|260901362|ref|ZP_05909757.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
          AQ4037]
 gi|308108437|gb|EFO45977.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
          AQ4037]
          Length = 98

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 60/79 (75%)

Query: 9  QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
          +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+
Sbjct: 10 RYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETR 69

Query: 69 ERMRIDYFMPGSLLINALM 87
          E+ R+D F   S LIN LM
Sbjct: 70 EKYRVDQFPAASRLINDLM 88


>gi|152995281|ref|YP_001340116.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150836205|gb|ABR70181.1| RNA methyltransferase, TrmA family [Marinomonas sp. MWYL1]
          Length = 440

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 171/386 (44%), Gaps = 80/386 (20%)

Query: 11  EQQLAEKVDRLR-QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           EQQL+ K D L+ Q+        L+     P  YR RA   I     D+         K 
Sbjct: 103 EQQLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRARLAI-----DI--------KKG 149

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           RM + +    S  I    I +   + L P L++    +     ++D A V L +  LL+D
Sbjct: 150 RMVLGFRGKASKEI----ISIDQCVVLTPNLQSTFLLLKLKLLENDLAGV-LGHVELLED 204

Query: 130 --------------------AWRECAIRLRDALHARKYQIQLIGRANKTKICLDR----D 165
                               AW + A + R AL+   +Q   +G+A   ++ L++    D
Sbjct: 205 TKGVSALFRLTSPISDELKNAWEDWAEKGRVALY---WQAPKVGKA---EVALEKMRYYD 258

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNG 221
             D RL         +     F Q NA +N    V  ++W+  + + +   +L+L+CG G
Sbjct: 259 LGDLRL---------KYHPQDFIQVNAAMNQKMVVQAMDWLNPSKQDV---ILDLFCGVG 306

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           NFSL LA H   V+ VE+ +  VEAAR N   N  +N+  V   + + T+ +  E     
Sbjct: 307 NFSLPLAVHAQAVIGVEVQETMVEAARENARVNGFDNLSFV---AADLTKPVNNE----- 358

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTH 339
                +       + +DPPR+G  +    +++  P  ILY+SCN  +L RD   +++  +
Sbjct: 359 -----LFKQTITKVLLDPPRAGAFEFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGY 413

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            + R++L D FP T H+E  +LL +K
Sbjct: 414 RVLRVSLMDMFPQTSHVETMMLLQKK 439


>gi|325478688|gb|EGC81799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 415

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 181/375 (48%), Gaps = 50/375 (13%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           T++   YE QL  K + ++  +       + +++I  SE + YR + +  +   G   Y+
Sbjct: 78  TIMDTNYETQLKLKENLIKNALKKTCGINLEHIEILPSEKLGYRNKIKVQVDEKGRLAYN 137

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR--LEPLLRAKLFQIDYLTSQSD-QA 117
               + + + + ID      LL N  + E +  IR   E + +    +I  ++ +SD + 
Sbjct: 138 ---KKSSNDLVAID----DCLLANNHIRENLPNIRKLTEDITKNLGKKIREISIRSDGEE 190

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-CLDRDYVDERLTVAGR 176
           I+  IY    +  +      L++    + Y I LI   N  KI  +  DY++ +L    +
Sbjct: 191 ILLNIYTNDEEKLYN----YLKEEYPNQVYNINLI---NGRKIMTIGNDYLNFKL----K 239

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGD--LLELYCGNGNFSLVLARHFDR 233
             I++  ++ F Q    +N + +E + A A K ++ D  LL+L+CG+G  S+ L  + D 
Sbjct: 240 DKIFKVSKDDFYQ----VNDYQIENLYASARKYLEKDKKLLDLFCGSGISSIAL--NDDH 293

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           ++ +EI K ++E A+ N  AN++ + K +  ++K   Q               I   + K
Sbjct: 294 IVGIEINKSAIEDAKQNALANNLKDYKFISKNAKYIDQKF-------------IKKEKIK 340

Query: 294 TIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQF 350
            + VDPPR+GLD   +  +      +I+YISCNP +L RD+   +   + +E++   D F
Sbjct: 341 AVTVDPPRAGLDKEIIKTLTKTKIENIIYISCNPQTLARDIKRFMDRGYKLEKIKAVDMF 400

Query: 351 PYTRHMECGVLLVRK 365
           P T H+E  VL+ RK
Sbjct: 401 PQTMHVETVVLMSRK 415


>gi|323705003|ref|ZP_08116579.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535429|gb|EGB25204.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 453

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 159/349 (45%), Gaps = 35/349 (10%)

Query: 35  IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFM-PGSLLINAL--MIEMM 91
           I  ++P+HYR +AE+ +      +    +  ++ E + ID  M   S+ +NA+  ++E  
Sbjct: 119 IGMADPLHYRDKAEYPLSIKNGKIEGGFYASKSHEVVGIDSCMIQSSVSVNAMKTVVEWA 178

Query: 92  ATIRL--------EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
              ++        +  LR  + ++ + T +    +V ++ +       +E   RL+  + 
Sbjct: 179 NDYKITVYDKKTGKGFLRHVITKVGFATKE---VMVIIVANSRDIPHKKELVSRLKGKIE 235

Query: 144 ARKYQIQLIGRANKTKICLDRD---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
             K  +  + R+N  ++  + +   Y D+ +T       +     SF Q N      + E
Sbjct: 236 NLKSVVLNVNRSNGKQVMGNENIVIYGDDYITDFIGDKKFEISPLSFFQVNPVQTKVLYE 295

Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
             L     ++GD  + ++YCG G  S+  A+H  +V  +E+   +VE AR N A N VNN
Sbjct: 296 KALEYAD-LKGDEIVFDVYCGIGTISIFFAKHARKVYGIEVIPDAVEDARQNAAINGVNN 354

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH 317
            + +   +++    +  +              +   I  DPPR GLD D     ++  P 
Sbjct: 355 AEFIAGKAEDIMIELCNK------------GLKPDVIVFDPPRKGLDKDVVEASIKMNPE 402

Query: 318 -ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            I+Y+SCNP +L RDL I     +  +++   D FPYT H+EC VL+ R
Sbjct: 403 KIIYVSCNPTTLARDLRIFEDNGYRTKKVQPVDMFPYTYHVECVVLMSR 451


>gi|160901890|ref|YP_001567471.1| RNA methyltransferase [Petrotoga mobilis SJ95]
 gi|160359534|gb|ABX31148.1| RNA methyltransferase, TrmA family [Petrotoga mobilis SJ95]
          Length = 387

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 106/214 (49%), Gaps = 22/214 (10%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
           +A++ +I   RDY  E++      L ++    SF Q N      + +  L+  +    D+
Sbjct: 190 KADEMEILYGRDYFYEKIL----DLTFKIGPFSFFQTNTKGTEVLYQTALSYAE--NSDV 243

Query: 214 L-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + Y G G  SL+LA    +V  +EI K +VEAA+ N   N++NNV+ V    K+F + 
Sbjct: 244 VYDFYSGTGTISLLLANKAKKVYGIEIIKEAVEAAKQNAILNNINNVEFVNKDVKDFVKQ 303

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                + +              I VDPPR+GL    +  +  Q +  I+YISCNP +L  
Sbjct: 304 QSSTEKPDY-------------IVVDPPRAGLHPNLIKFIKTQQFNKIIYISCNPKTLIP 350

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L  LS  +TI    L D FP+T H+E  VL+ R
Sbjct: 351 NLKELSDLYTISDFHLVDMFPHTDHVESVVLMTR 384


>gi|326794412|ref|YP_004312232.1| RNA methyltransferase, TrmA family [Marinomonas mediterranea MMB-1]
 gi|326545176|gb|ADZ90396.1| RNA methyltransferase, TrmA family [Marinomonas mediterranea MMB-1]
          Length = 435

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 100/185 (54%), Gaps = 22/185 (11%)

Query: 187 FTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NA +N  M+E    W LA TK  +  +L+L+CG+GNFSL LAR    VL VE  + 
Sbjct: 267 FIQVNASMNEKMVEQAMRW-LAPTK--EDIVLDLFCGSGNFSLPLARRAGEVLGVEGLET 323

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            VE AR N   N ++NV+ +   + + T+   +           + S +   + +DPPRS
Sbjct: 324 MVEFARLNAQENDLDNVQFI---AADLTKPAPKV----------LKSKKVTKVLLDPPRS 370

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           G  +    +V+  P  ILY+SCN  +L RD   +++  + + R++L + FP T H E  +
Sbjct: 371 GAFEFLETLVKFKPEQILYVSCNASTLARDAEYLIANGYVVSRVSLMEMFPQTAHAEAMM 430

Query: 361 LLVRK 365
           LL RK
Sbjct: 431 LLQRK 435


>gi|39996847|ref|NP_952798.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|51316710|sp|Q74CC6|Y1748_GEOSL RecName: Full=Uncharacterized RNA methyltransferase GSU1748
 gi|39983735|gb|AAR35125.1| RNA methyltransferase, TrmA family [Geobacter sulfurreducens PCA]
 gi|307634915|gb|ADI84585.2| RNA methyltransferase, TrmA family [Geobacter sulfurreducens KN400]
          Length = 438

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 152/342 (44%), Gaps = 38/342 (11%)

Query: 40  PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-MATIRL-- 96
           P  YR RA+F I   G  L H+ F ++    + ID   P   +I    I + +  +RL  
Sbjct: 119 PFGYRCRAQFKIRWSGGRL-HMGFYRRGSHYV-ID--APAECVICDPAINLTLRDLRLVL 174

Query: 97  ----EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH-ARKYQIQL 151
               EP    K+ QID  T +     V L+ H + D+  R          H A    I L
Sbjct: 175 PDFSEP---DKIPQIDAATGEDGH--VLLVVHYIGDNPGRAADFFRSIQPHLASVTGIHL 229

Query: 152 -IGRANKTKICLDRD---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AAT 206
             GR +        D   Y    L   GR L        F+Q N   N  ++   L  A 
Sbjct: 230 QCGRKDSIMHVWGVDSLSYTVPGLGDQGRPLSLSFRRGGFSQVNYRQNRVLVSKALHLAG 289

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            G    +L+L+CGNGNFSL LA    +++ VE   PS++ AR N   N + +V+ + + +
Sbjct: 290 VGPGRRVLDLFCGNGNFSLPLASGGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDA 349

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
            + T+ +R   E             F T+ +DPPR+G  DA VG V   A   I+Y+SC+
Sbjct: 350 ADGTRRLRAAGE------------HFDTVILDPPRTGARDA-VGEVAILAPERIVYVSCD 396

Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +L RDL +L    + +      D FP T H+E   LL+R 
Sbjct: 397 PPTLGRDLGVLRKAGYRVVGSHGVDMFPQTYHIESVTLLIRS 438


>gi|304439903|ref|ZP_07399797.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371642|gb|EFM25254.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 415

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 16/154 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++LY G G  SL +A   + V+AVE  + SVE AR N   N + NV+  R   ++ T+ 
Sbjct: 275 VMDLYSGIGTISLKMAEQVESVIAVESFEGSVEIARKNAELNGIENVEFARGKVEDLTEK 334

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCR 330
           + +              Y    + +DPPR+G  ++A   +++  P  I Y+SCNP +L R
Sbjct: 335 LEK--------------YTVNKVLLDPPRAGAKEEALRTIIKLNPERITYVSCNPSTLAR 380

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL ILS  + IE++   D F ++ H EC  LL R
Sbjct: 381 DLQILSEKYKIEKIIPVDMFSHSSHCECVALLTR 414


>gi|323491189|ref|ZP_08096375.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio brasiliensis LMG
           20546]
 gi|323314557|gb|EGA67635.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio brasiliensis LMG
           20546]
          Length = 439

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 25/198 (12%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
           AG T+ +    N+F Q N  +N  M+E  L+  +  + D +L+L+CG GNFSL +A+   
Sbjct: 259 AGATIPFE--PNNFIQVNQKVNQAMVEQALSWLQLTKQDRVLDLFCGLGNFSLPIAKQVT 316

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V  VE     VE A YN   N + N          F QA   E    +L   +    +F
Sbjct: 317 SVTGVEGVDAMVEKATYNAKVNQIENA--------SFYQANLEEDVSGQLWAAE----KF 364

Query: 293 KTIFVDPPRSGLDDATVGMVQ-----AYPHILYISCNPDSLCRD-LSILSTTHTIERLAL 346
             I +DP R+G      G+++         ++Y+SCNP +L RD  S+LS  + +++L +
Sbjct: 365 DKILLDPARAG----ASGIIEQISALGASRVVYVSCNPATLARDSQSLLSQGYKLQKLGM 420

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E   L V+
Sbjct: 421 LDMFPHTSHLESMALFVK 438


>gi|94967169|ref|YP_589217.1| (Uracil-5)-methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549219|gb|ABF39143.1| 23S rRNA m(5)U-1939 methyltransferase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 441

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 171/377 (45%), Gaps = 43/377 (11%)

Query: 9   QYEQQLAEKVDRLRQMM-----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD-DLYHIM 62
           QY +Q+  K   L + +     L  + P +Q   +EP+ YR R    + H     + +  
Sbjct: 87  QYAEQVKAKAQILEETLSRTAKLKLEQP-IQTHAAEPLGYRNRTRMRVSHVPQFAIGYYR 145

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           F   +   + ++     S LIN ++  + A  R E + R ++ ++ +  +  D  ++  +
Sbjct: 146 FGSHS--LLPVEQCPISSPLINRVLQGLWAAGREERIAR-EVREVQFFANHDDSRLLLEL 202

Query: 123 Y--HRLLDDAWRECAIRLRDAL----HARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
           Y  H    DA +     LR  +        ++      +   +  L R      +    R
Sbjct: 203 YIDHHAEPDALQPMIETLRGKMPEIAGVAVFRGAPADDSEDQRAPLTRAKASPGVFFGER 262

Query: 177 TLIYRQIENSFTQPNAG----INVHML-EWVLAATKGIQGDL-LELYCGNGNFSLVLARH 230
           +L Y+   + + Q +AG     N  +L E     T+G  G L L+LY G G FSL LA  
Sbjct: 263 SLRYKTKRHEY-QVSAGAFFQTNRFLLDEMAETVTRGHSGKLALDLYSGGGFFSLPLADQ 321

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           F++V+AVE +  S    + ++  N + NVK VR  ++EF +   R+              
Sbjct: 322 FEKVIAVEASGHS----QADLKTNALRNVKAVRSGTEEFLRGEGRQ-------------L 364

Query: 291 RFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
           R   + VDPPR+GL + T  ++   +   + Y+SC+P +L RD+ +L  +   +E + LF
Sbjct: 365 RPDLVVVDPPRAGLGEKTSHLIGRMSVGRVTYVSCDPATLSRDMKVLVESGFRVEEVHLF 424

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP T H+E  + LVR
Sbjct: 425 DLFPQTYHLESVLHLVR 441


>gi|171913271|ref|ZP_02928741.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 408

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G F+L  ARHF++V  VEI++ +V  A +N   N++ N K +  S+      
Sbjct: 263 LIDAYCGSGLFALACARHFEQVNGVEISESAVAKATHNARINNITNAKFIAGSA------ 316

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330
              ER F  +      S    +I VDPPR+G  +  +  + AY PH ++Y+SCNP +  R
Sbjct: 317 ---ERIFAGVLLPAAES----SIIVDPPRAGCGEDFLHQLFAYGPHNVVYVSCNPATQMR 369

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL   +   + +E++  FD FP TRH+EC + L +K
Sbjct: 370 DLVKFVEAGYILEKVQPFDLFPQTRHLECVMTLTKK 405


>gi|268591277|ref|ZP_06125498.1| hypothetical protein PROVRETT_07550 [Providencia rettgeri DSM 1131]
 gi|291313252|gb|EFE53705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia rettgeri
           DSM 1131]
          Length = 443

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 49/361 (13%)

Query: 22  RQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL 81
           R+  L   VP+  +   EP  YR RA   + +       +M  +Q++    +D       
Sbjct: 114 RETSLDISVPS--VISGEPYGYRRRARLGLQYQPKSKNVVMGFRQSQSNTLVD------- 164

Query: 82  LINALMIEMMATIRLEPLL--------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           + N  ++     I L+PL         +AKL  ++ +  ++D   + LI  R L      
Sbjct: 165 IKNCPILSPDLDILLKPLSECINQLSNKAKLGHVELI--RADNCKIVLI--RYLTPFSLS 220

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
              +L D  +     I L G     +  L  +       VAG  L +  +  +F Q N  
Sbjct: 221 DTQKLSDFENQHGVSIWLAGNDENLQ-ALSPNSPQPEYQVAGELLKFNPL--NFIQVNGQ 277

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           +N  M+E  LA       D +L+L+CG GNF+L +AR    V+ VE  +  VE AR N  
Sbjct: 278 VNQQMVEQALAWLDLNSEDRVLDLFCGMGNFTLPIARLVKSVVGVEGVENLVEQARNNAQ 337

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS-----YRFKTIFVDPPRSGLDDA 307
            N + N                    +N   +  IH+     + F  + +DP R+G    
Sbjct: 338 LNTICNATF-----------------YNENLEAQIHTQPWAVHGFNKVLLDPARAGAAGV 380

Query: 308 TVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              +++  P  I+Y+SCNP +L RD  + L   + + +L + D FP T H+E   L +R+
Sbjct: 381 MEHLIKLMPEKIVYVSCNPTTLARDSKVLLDGGYQLLQLRMLDMFPQTSHLESMALFIRR 440

Query: 366 P 366
           P
Sbjct: 441 P 441


>gi|119471910|ref|ZP_01614218.1| 23S rRNA (uracil-5)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119445283|gb|EAW26573.1| 23S rRNA (uracil-5)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 441

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 174/380 (45%), Gaps = 73/380 (19%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           +QL EK    +Q  L +Q P L    S   HYR  A   +          MFD+  K +M
Sbjct: 109 EQLFEKF--AKQTNLNWQAPLL----SSSTHYRRSARIAV----------MFDKAAK-KM 151

Query: 72  RIDYFMPGS---LLINALMI-----EMMATIRLEPLLRAK-LFQIDYLT-SQSDQAIVTL 121
           RI Y   GS   + IN   +     E + T+  E +   K L  I +L   QS+     +
Sbjct: 152 RIGYRASGSKNIVSINKCAVLTDAYETVFTLFDELINHNKSLHSISHLQLCQSETHNFVV 211

Query: 122 IYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRAN---KTKICLDRDYVDERLTVAGRT 177
           I H + + D  +   I+   A    KY +     ++    T I +   Y+DE     G  
Sbjct: 212 IRHTKAISDEAKAVVIK---ACTPYKYSVIWQSESDVIDHTNITMPYYYLDEFKLKFGFG 268

Query: 178 LIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231
           L      ++F Q NA +N  ML    +W+     G+ G+  +L+L+CG GNFSLVLA+  
Sbjct: 269 L------DNFIQVNAQVNQAMLKQSVDWL-----GLSGNENILDLFCGIGNFSLVLAKQA 317

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ +E    +V  A  N   N ++N    +    + TQ ++  + FN  K++D+    
Sbjct: 318 KTVIGIEGVASAVAMAEQNAQTNSISN---AQFHCFDLTQKIQNAQWFN--KNLDV---- 368

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSILS-TTHTIERLA 345
              + +DP R+G     + +++  P      ILY+SC+P +L RD +I+S     + ++ 
Sbjct: 369 ---LVLDPSRTG----AMAILEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELNKIG 421

Query: 346 LFDQFPYTRHMECGVLLVRK 365
           L + FP+T H+E   L  R+
Sbjct: 422 LMNMFPHTGHIETMALFQRR 441


>gi|317473452|ref|ZP_07932746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
           3_2_56FAA]
 gi|316899102|gb|EFV21122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
           3_2_56FAA]
          Length = 458

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 14/153 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI K ++E AR N   NH++NV+     ++E    + 
Sbjct: 315 DLYCGIGTISLFLAQKAKQVYGVEIVKEAIEDARLNAEMNHMDNVQFFVGKAEE---VLP 371

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDL 332
           RE E N +            I VDPPR G D A +  MV+  P  I+Y+SC+P +L RDL
Sbjct: 372 REYEKNGV--------YADVIVVDPPRKGCDRALLDTMVKMGPERIVYVSCDPGTLARDL 423

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            +L    +++E++A+ DQF +T H+E   LL +
Sbjct: 424 KVLGGEGYSVEKVAVVDQFGHTGHVETVCLLSK 456


>gi|308067596|ref|YP_003869201.1| RNA methyltransferase [Paenibacillus polymyxa E681]
 gi|305856875|gb|ADM68663.1| Hypothetical RNA methyltransferase [Paenibacillus polymyxa E681]
          Length = 534

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 102/213 (47%), Gaps = 26/213 (12%)

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           + DE   + GR +IY  I N        SF Q N  +   +L        G+ G   +++
Sbjct: 331 FGDETRVLWGRDVIYDYIGNVQFAISARSFYQVNP-VQTEVLYGKTVEYAGLTGKETVID 389

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  SL LA+H D+V  VEI K +++ AR N   N + NVK    +S++   A + 
Sbjct: 390 AYCGIGTISLFLAQHADQVYGVEIVKEAIDDARSNALLNEMRNVKFEVGASEDVIPAWKE 449

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333
           +                  I VDPPR G D   +G + +  P  ++Y+SCNP +L RDL 
Sbjct: 450 Q------------GITADVIVVDPPRKGCDPRLLGTILEMKPERVVYVSCNPSTLARDLR 497

Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           IL    ++   +   D FP+T H+E   L+VR 
Sbjct: 498 ILEDGGYSTVEVQPVDMFPHTTHVENVALIVRS 530


>gi|118580203|ref|YP_901453.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118502913|gb|ABK99395.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter propionicus DSM
           2379]
          Length = 446

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 145/340 (42%), Gaps = 41/340 (12%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLR 101
           YR R +F +   G +L    + Q T          P +L +IN ++  +   +   P   
Sbjct: 126 YRSRVQFKLHGAGPNLRIGFYRQGTHFVEDAGQGCPIALPVINRILGSLREMLPAFPD-P 184

Query: 102 AKLFQIDYLTSQSDQAIVTLIY----HRLLDDAWRECAIRLRDALH-----ARKYQIQLI 152
            K+ QI+ L      A+V + Y    H+     +RE A +L  A        RK  +Q +
Sbjct: 185 TKIPQIN-LECAEKGAVVIVNYIGDDHQGAKAFFRERAAQLEQATALYLQTGRKSTLQKV 243

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
              +     L      E  T    +L YR     F Q NA  N  +L  V       + D
Sbjct: 244 FGDD----LLQYSQEGESSTAPACSLTYR--PGGFAQVNAAQNSALLRLVREFADCRRDD 297

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+LYCGNGNFSL LAR    V  +E    S+ AAR+N   N + NV+ +   +     
Sbjct: 298 QILDLYCGNGNFSLPLARGVAAVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAG 357

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPD 326
            +  +              RF TI +DPPRSG  D    +++  P      I+YISC+P 
Sbjct: 358 KLMGD------------GRRFPTIILDPPRSGAAD----LLEHIPRLGADKIIYISCDPS 401

Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +L RD  +L    +T+      D FP T H+E   LL R+
Sbjct: 402 TLARDCGVLFGKGYTVVSSVPVDMFPQTFHLESVTLLRRR 441


>gi|282882595|ref|ZP_06291214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus
           lacrimalis 315-B]
 gi|281297570|gb|EFA90047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus
           lacrimalis 315-B]
          Length = 518

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 14/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  SL +A    + L VEI + ++E AR N   N +   + +   S+E  + 
Sbjct: 284 IADLYSGVGTLSLEIASRKAQTLGVEIVEEAIEDARINAQKNKLQ-ARFICGKSEEILEK 342

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           ++ + +            +   I VDPPR G+D   V  +   +Y  I+YISCNP +L R
Sbjct: 343 IQTDEKI-----------KMDKILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLAR 391

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL IL   + +E++ +FD FPYT H+E   LL +
Sbjct: 392 DLKILKEKYKVEKVEIFDLFPYTSHVEVITLLSK 425


>gi|304316267|ref|YP_003851412.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777769|gb|ADL68328.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 452

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 17/161 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  ++++YCG G  S+  A++   V  +E+   +VE A+ N A N +NN   +   +
Sbjct: 303 LKGDEIVIDVYCGIGTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAGKA 362

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCN 324
           +     M+R  +   + DI         I +DPPR GLD D     V+  P  I+YISCN
Sbjct: 363 E---HVMKRLYKEGLMPDI---------IILDPPRRGLDKDVVDECVKMNPQKIIYISCN 410

Query: 325 PDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           P +L RDL I     +  E++   D FPYT H+EC VL+ R
Sbjct: 411 PTTLARDLRIFEDNGYKTEKVQPVDMFPYTYHVECVVLMSR 451


>gi|167747772|ref|ZP_02419899.1| hypothetical protein ANACAC_02493 [Anaerostipes caccae DSM 14662]
 gi|167653134|gb|EDR97263.1| hypothetical protein ANACAC_02493 [Anaerostipes caccae DSM 14662]
          Length = 459

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 105/207 (50%), Gaps = 27/207 (13%)

Query: 173 VAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGN 222
           V G   IY  I N        SF Q N      + E  L    G+ GD  + +LYCG G 
Sbjct: 264 VYGPAYIYDYIGNVKYQIGPLSFFQVNPRQTKVLYEKALEYA-GLCGDETVWDLYCGIGT 322

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+   +V  VEI K ++E AR N   N ++NVK     ++E    + RE E N +
Sbjct: 323 ISLFLAQKAKQVYGVEIVKEAIEDARLNARMNRMDNVKFFVGKAEE---VLPREYEKNGV 379

Query: 283 -KDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST-T 338
             D+         I VDPPR G D A +  MV+  P  I+Y+SC+P +L RDL +L    
Sbjct: 380 YADV---------IVVDPPRKGCDKALLDTMVKMGPERIVYVSCDPGTLARDLKVLGGEG 430

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + + ++A+ DQF +T H+E   LL RK
Sbjct: 431 YEVRKVAVVDQFGHTGHVETVALLKRK 457


>gi|258508017|ref|YP_003170768.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
 gi|257147944|emb|CAR86917.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
 gi|259649345|dbj|BAI41507.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
          Length = 455

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 105/218 (48%), Gaps = 26/218 (11%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
           ++GR  K+K    RDY+ ++L   G       +  SF Q N  I   +L        G+ 
Sbjct: 253 ILGR--KSKTIYGRDYLLDKLL--GSEFQISPV--SFYQVNP-IQTEVLYTKAIEAAGLT 305

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G   +++ Y G G  SL +ARH  +V  VE+ + +V  A  N A NH+ NV         
Sbjct: 306 GKETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVHDAEANAARNHIKNVTF------- 358

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNP 325
             +  + E    + KD D+       + VDPPR GLD      VG ++  P I+YISCNP
Sbjct: 359 --EVGKAEDVMQKWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKP-PKIVYISCNP 412

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
            +L RDL +L+   +T +     D FP T+H+E   LL
Sbjct: 413 ATLARDLQLLAAFGYTAKETQPVDMFPQTQHIESVTLL 450


>gi|213612917|ref|ZP_03370743.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 55

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 47/55 (85%)

Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  +
Sbjct: 1   MVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTAR 55


>gi|317132473|ref|YP_004091787.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense
           YUAN-3]
 gi|315470452|gb|ADU27056.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense
           YUAN-3]
          Length = 453

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   L +A    R++ VE+   +V  A+ N A N + N       + E T  
Sbjct: 310 LLDLYCGVGTIGLSMAGAVGRLIGVEVVPDAVADAKRNAAGNGIENADFFCADAGEATVR 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           ++++       D+         + VDPPR GLD A V  +VQ  P  ++YISCNP++L R
Sbjct: 370 LQQQ---GLAPDV---------VVVDPPRKGLDAAAVTAVVQMAPSRVVYISCNPETLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL++ +   +   RL  +D FP T H+EC  LLV++
Sbjct: 418 DLTLFAEEGYVCTRLRPYDLFPRTAHVECCALLVKR 453


>gi|260893156|ref|YP_003239253.1| RNA methyltransferase, TrmA family [Ammonifex degensii KC4]
 gi|260865297|gb|ACX52403.1| RNA methyltransferase, TrmA family [Ammonifex degensii KC4]
          Length = 436

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 148/337 (43%), Gaps = 34/337 (10%)

Query: 40  PIHYRMRAEFHI-WHDGDDLYHIMFDQQTKERMRID----YFMPGSLLINALMIEMMATI 94
           P HYR +   H+ W     +  +          RID    Y + G L  NAL   +   I
Sbjct: 122 PWHYRNKVRLHVAWEGRKPVLGLYAPSSHVIGHRIDRSPCYILDGQL--NALARVLAGLI 179

Query: 95  RLEPLLRAKLFQIDY-LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK--YQIQL 151
           +    + A L  +   L + + + +V L         W+    RL D L A      +  
Sbjct: 180 KKHAEMLAGLTAVSLRLAAATGETMVVLEGASEHYSRWK----RLVDELTAAVPVTTVVR 235

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQ 210
           +G   K ++     ++ + L      L +R    SF Q N      +   VL  A+   +
Sbjct: 236 VGARGKEEVLYGEGHITDSLD----GLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGR 291

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +++ YCG G  +L LAR   +V+ +EI+  +V  A  N A N +++V  V+ +++E  
Sbjct: 292 ERVIDAYCGVGTITLFLARKAAQVIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEV- 350

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA-YPHILYISCNPDSL 328
                      L ++      F  + +DPPR G+  A +  +V+A  P ++Y+SCNP +L
Sbjct: 351 -----------LPELLAREGMFDLVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATL 399

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            RDL  LS   + ++ +   D FP+T H+EC   L R
Sbjct: 400 ARDLGFLSAQGYRVQEVQPVDMFPHTYHVECVAYLCR 436


>gi|258622336|ref|ZP_05717361.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM573]
 gi|258585352|gb|EEW10076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM573]
          Length = 440

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 21/189 (11%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           + N F Q N  +N  M+E  L   +  + D +L+L+CG GNF+L LA+    V+ VE  +
Sbjct: 266 LPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQDVVGVEGVE 325

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVD 298
             V+ A +N   N +NNV         F QA       N  +D+   S+   +F  + +D
Sbjct: 326 EMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTNASWAQQKFAKVLLD 370

Query: 299 PPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHM 356
           P R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+T H+
Sbjct: 371 PARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHL 430

Query: 357 ECGVLLVRK 365
           E   L V+K
Sbjct: 431 ESMALFVKK 439


>gi|310640376|ref|YP_003945134.1| RNA methyltransferase, trma family [Paenibacillus polymyxa SC2]
 gi|309245326|gb|ADO54893.1| RNA methyltransferase, TrmA family [Paenibacillus polymyxa SC2]
          Length = 585

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 102/213 (47%), Gaps = 26/213 (12%)

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           + DE   + GR +IY  I N        SF Q N  +   +L        G+ G   +++
Sbjct: 385 FGDETRVLWGRDVIYDYIGNVQFAISARSFYQVNP-VQTEVLYSKTVEYAGLTGKETVID 443

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  SL LA+H D+V  VEI K +++ AR N   N + NVK    +S++   A + 
Sbjct: 444 AYCGIGTISLFLAQHADQVYGVEIVKEAIDDARSNALLNEMRNVKFEVGASEDVIPAWKE 503

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333
           +                  I VDPPR G D   +  + +  P  ++Y+SCNP +L RDL 
Sbjct: 504 Q------------GITADVIVVDPPRKGCDPRLLDTILEMKPERVVYVSCNPSTLARDLR 551

Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           IL    ++   +   D FP+T H+E   LLVRK
Sbjct: 552 ILEDGGYSTVEVQPVDMFPHTVHVESVALLVRK 584


>gi|227484668|ref|ZP_03914984.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237388|gb|EEI87403.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 417

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 166/381 (43%), Gaps = 58/381 (15%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           T++  +YE Q+  K + +   +    ++++ +++I  S+ + YR +    +  DG   Y+
Sbjct: 78  TIMDIKYENQIQIKKNLILSALAKSTSYKLEDIEIIPSKELRYRNKIRLQVEKDGRLAYN 137

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----LEPLLRAKLFQIDYLTSQSD 115
             +            ++   LL+   + E +  I      +    +  + +I   T+ +D
Sbjct: 138 KSYSNDL-------VYIKDCLLVRENIGENLGKIEEITKDISEKFKGAIKEITVRTNGTD 190

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN---KTKICLDRDYVDERLT 172
                 I   L  D   E    +++   + K+ I +IG+ N     K  L+    D+   
Sbjct: 191 ------IMLNLDLDNNNEPIAYIKEKYSSSKFFINIIGKENINISGKDFLEYKICDKTFR 244

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLAR 229
           ++G         N F Q    +N   +E +    K + G    +L+LYCG+   S+ +  
Sbjct: 245 ISG---------NDFYQ----VNDFQIENLYGQAKKLLGSGKKVLDLYCGSATSSIAI-- 289

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           + DR++ VEI K +++ A+ N   N + + K +  ++K   +               I  
Sbjct: 290 NGDRLVGVEINKNAIQDAKINAEINDLKDFKFIAKNAKYIDEKF-------------IKK 336

Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLAL 346
            +  ++ VDPPR+GLD   +  +       I+YISCNP +L RD++      + +E++  
Sbjct: 337 EKIDSLIVDPPRAGLDKDLIKSIGKSGLKEIIYISCNPQTLARDINRFEKEGYKLEKIKA 396

Query: 347 FDQFPYTRHMECGVLLVRKPS 367
            D FP T H+EC  L+ R  S
Sbjct: 397 VDMFPQTMHVECIALIQRVKS 417


>gi|310827128|ref|YP_003959485.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308738862|gb|ADO36522.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 446

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 18/185 (9%)

Query: 185 NSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           NSF Q N      + + V  +A   G +  L +LYCG G   L LAR   RV  +EI + 
Sbjct: 273 NSFFQVNTRQTKVLYDLVKRMATLTGAE-TLFDLYCGTGTIGLYLAREAARVYGIEIVEN 331

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V  A+ N   N + N++ ++  S         E E  +L +  +H      I +DPPR 
Sbjct: 332 AVLDAQENAERNQIKNIRFIQGKS---------ETEAPKLAEEGVHP---DVIVLDPPRK 379

Query: 303 GLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECG 359
           G D A + M++  + P ++Y+SCNP +L RDL IL    + ++ +   D FP T H+E  
Sbjct: 380 GCDPALLEMIENLSVPKVVYVSCNPSTLARDLKILREYGYQVQEVQPVDLFPGTGHVETV 439

Query: 360 VLLVR 364
           VL+ +
Sbjct: 440 VLMSK 444


>gi|191638003|ref|YP_001987169.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23]
 gi|190712305|emb|CAQ66311.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23]
 gi|327382080|gb|AEA53556.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei
           LC2W]
          Length = 457

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 20/179 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  +   +L        G+ G  ++++ Y G G  SL +ARH   V  VE+ +P+
Sbjct: 285 SFYQVNP-VQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 343

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   NH++NV      ++E  Q         R KD   +      + VDPPR G
Sbjct: 344 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 391

Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
           LD +    VG ++  P I+Y+SCNP +L RDL +L+   +T +     D FP T+H+E 
Sbjct: 392 LDKSFIDAVGYMKP-PKIVYVSCNPATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 449


>gi|323499990|ref|ZP_08104946.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio sinaloensis DSM 21326]
 gi|323314956|gb|EGA68011.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio sinaloensis DSM 21326]
          Length = 439

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 21/196 (10%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVL---AATKGIQGDLLELYCGNGNFSLVLARH 230
           AG T+ +    N+F Q N  +N  M+E  L   A  K  Q  +L+L+CG GNFSL +A+ 
Sbjct: 259 AGVTIPFE--PNNFIQVNQQVNQSMVEQALDWLALDK--QDRVLDLFCGLGNFSLPMAKR 314

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             RV+ VE     VE AR N   NH+ N          F QA   E+E   +      S 
Sbjct: 315 VKRVVGVEGVDAMVEKARTNAELNHLGNA--------HFFQA-NLEQE---MSGQPWASE 362

Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFD 348
           +F  I +DP R+G       + +     ++Y+SCNP +L RD  S+L+    +++L + D
Sbjct: 363 KFDKILLDPARAGASGIVEQLSELGATRVVYVSCNPATLARDSQSLLNQGFHLKKLGMLD 422

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   L V+
Sbjct: 423 MFPHTSHLESMALFVK 438


>gi|327385224|gb|AEA56698.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei
           BD-II]
          Length = 454

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 20/179 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  +   +L        G+ G  ++++ Y G G  SL +ARH   V  VE+ +P+
Sbjct: 282 SFYQVNP-VQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 340

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   NH++NV      ++E  Q         R KD   +      + VDPPR G
Sbjct: 341 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 388

Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
           LD +    VG ++  P I+Y+SCNP +L RDL +L+   +T +     D FP T+H+E 
Sbjct: 389 LDKSFIDAVGYMKP-PKIVYVSCNPATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 446


>gi|239631838|ref|ZP_04674869.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526303|gb|EEQ65304.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 453

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 20/179 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  +   +L        G+ G  ++++ Y G G  SL +ARH   V  VE+ +P+
Sbjct: 282 SFYQVNP-VQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 340

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   NH++NV      ++E  Q         R KD   +      + VDPPR G
Sbjct: 341 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 388

Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
           LD +    VG ++  P I+Y+SCNP +L RDL +L+   +T +     D FP T+H+E 
Sbjct: 389 LDKSFIDAVGYMKP-PKIVYVSCNPATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 446


>gi|227535460|ref|ZP_03965509.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227186870|gb|EEI66937.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 457

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 20/179 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  +   +L        G+ G  ++++ Y G G  SL +ARH   V  VE+ +P+
Sbjct: 285 SFYQVNP-VQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 343

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   NH++NV      ++E  Q         R KD   +      + VDPPR G
Sbjct: 344 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 391

Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
           LD +    VG ++  P I+Y+SCNP +L RDL +L+   +T +     D FP T+H+E 
Sbjct: 392 LDKSFIDAVGYMKP-PKIVYVSCNPATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 449


>gi|301066110|ref|YP_003788133.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus
           casei str. Zhang]
 gi|300438517|gb|ADK18283.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           casei str. Zhang]
          Length = 454

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 20/179 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  +   +L        G+ G  ++++ Y G G  SL +ARH   V  VE+ +P+
Sbjct: 282 SFYQVNP-VQTEVLYKKAIEAAGLTGKKNVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 340

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   NH++NV      ++E  Q         R KD   +      + VDPPR G
Sbjct: 341 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 388

Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
           LD +    VG ++  P I+Y+SCNP +L RDL +L+   +T +     D FP T+H+E 
Sbjct: 389 LDKSFIDAVGYMKP-PKIVYVSCNPATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 446


>gi|323705906|ref|ZP_08117477.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534704|gb|EGB24484.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 452

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 31/220 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           +  K ++   RDY+ E +      L ++    SF Q N+       E + +  +   GD 
Sbjct: 254 KCEKLEVLYGRDYIMEEIL----GLKFKISAFSFFQTNS----KGAERLYSVAREFAGDI 305

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               L +LYCG G   +++A    +V+ +E+ + +V+AAR N   N +NN++ +      
Sbjct: 306 SNKILFDLYCGTGTIGMIMAPLSKKVVGIELVEEAVDAARENARLNGLNNIQFIA----- 360

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPD 326
                +R +E N   D+         + +DPPR G++  A + +++  P  I+Y+SCNP 
Sbjct: 361 -GDVAQRIKEINDKPDV---------VVLDPPRPGVNPKAVMDIIKLNPEKIIYVSCNPV 410

Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SL RDL +L    + +E++   D FP+T H+E  VLL  K
Sbjct: 411 SLVRDLKMLIQRQYKVEKVKCVDMFPHTYHIETVVLLTNK 450


>gi|218283356|ref|ZP_03489390.1| hypothetical protein EUBIFOR_01979 [Eubacterium biforme DSM 3989]
 gi|218215910|gb|EEC89448.1| hypothetical protein EUBIFOR_01979 [Eubacterium biforme DSM 3989]
          Length = 406

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 155/353 (43%), Gaps = 55/353 (15%)

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLE- 97
           HYR +       D   +Y  ++   +   ++ +  +    L+N ++    E++ +++LE 
Sbjct: 54  HYRNKVIVGFAKDKGKVYSGLYASHSHRVVKTENCIMQPKLVNEIINKITELVGSMKLEL 113

Query: 98  -------PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
                   LLR  L +  +   ++D+ +V  +  + +  + +     L       K  +Q
Sbjct: 114 YNERTGTGLLRHVLIRWGH---KTDEVMVVFVTSQKMFPSRKNMVRVLTSEFPQIKTIVQ 170

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQI--------ENSFTQPNA-------GIN 195
            I    KT I L     DE + + G  +I+ ++         NSF Q ++       G+ 
Sbjct: 171 NIN-PRKTSIVLQ----DEAIVLYGNGMIHDELCGLDIAFSHNSFYQIHSEQCEVLYGLA 225

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML+     T      +L+ YCG G   L +     +V+ VE+   ++E A+YN   N 
Sbjct: 226 KKMLDLKETDT------VLDTYCGVGTIGLTMTDSCKKVMGVEVNPDAIENAKYNAKQNK 279

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N++ V M S EF   MR+ R+++          R+  I +DPPR+G     +    A 
Sbjct: 280 IKNIEFVAMDSTEF---MRQARKYHN---------RYDAIILDPPRAGTTKDFIECATAL 327

Query: 316 P--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
               ILYISC+P +  RDL+      +   +L L D FPYT H+E   +L +K
Sbjct: 328 NPRKILYISCDPRTQVRDLNQFRKQGYVTNKLELVDLFPYTDHIESVCVLEKK 380


>gi|255528224|ref|ZP_05395044.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
 gi|296188118|ref|ZP_06856510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           carboxidivorans P7]
 gi|255508074|gb|EET84494.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
 gi|296047244|gb|EFG86686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           carboxidivorans P7]
          Length = 450

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 122/267 (45%), Gaps = 42/267 (15%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           QID+   +  ++++ L Y           A  L+  LH        + +A++ K+   RD
Sbjct: 218 QIDFNLEEFKESLLNLSY-----------AGELKGILHTINDSFSDVVQADEIKVLYGRD 266

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGN 220
           Y+ E L      L ++    SF Q N+       E + +  K   GD     + +LYCG 
Sbjct: 267 YIIEELM----GLKFKIAPESFFQTNS----KGAEKLYSIVKEFLGDASSKVVFDLYCGT 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G    ++A +  +VL +E+ + +V+AA  N   N +NN + +     +  + +  + +  
Sbjct: 319 GTIGQIVAPNAKKVLGIELIEEAVKAANENSKLNGLNNCEFIAGDVAKVIKTVTEKPD-- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILST 337
                         I +DPPR G+    +  V  +  P I+Y+SCNP +L  DL  ++  
Sbjct: 377 -------------VIILDPPRPGVHPVALDYVIKFNAPDIVYVSCNPKTLVTDLKGLIEA 423

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +T+E++ + D FP+T H+E  V L +
Sbjct: 424 GYTVEKVKIMDMFPHTPHVETVVKLSK 450


>gi|229527058|ref|ZP_04416453.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae
           12129(1)]
 gi|229335455|gb|EEO00937.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae
           12129(1)]
          Length = 440

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSSSWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|229551874|ref|ZP_04440599.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           rhamnosus LMS2-1]
 gi|229314818|gb|EEN80791.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           rhamnosus LMS2-1]
          Length = 459

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 26/214 (12%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
           ++GR  K+K    RDY+ ++L  +     ++    SF Q N  I   +L        G+ 
Sbjct: 259 ILGR--KSKTIYGRDYLLDKLLGSE----FQISPVSFYQVNP-IQTEVLYTKAIEAAGLT 311

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G   +++ Y G G  SL +ARH  +V  VE+ + +V  A+ N A NH+ NV         
Sbjct: 312 GKETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTF------- 364

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNP 325
             +  + E    + KD D+       + VDPPR GLD      VG ++  P ++YISCNP
Sbjct: 365 --EVGKAEDVMQKWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKP-PKMVYISCNP 418

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            +L RDL +L+   +T +     D FP T+H+E 
Sbjct: 419 ATLARDLQLLTAFGYTAKETQPVDMFPQTQHIES 452


>gi|121728979|ref|ZP_01681983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V52]
 gi|147674864|ref|YP_001217954.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae O395]
 gi|262167283|ref|ZP_06034993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC27]
 gi|226725397|sp|A5F5I8|RUMA_VIBC3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|121628745|gb|EAX61212.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae V52]
 gi|146316747|gb|ABQ21286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae O395]
 gi|227014344|gb|ACP10554.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae O395]
 gi|262024258|gb|EEY42949.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC27]
          Length = 440

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QEHVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|199597359|ref|ZP_03210790.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           rhamnosus HN001]
 gi|199591875|gb|EDY99950.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           rhamnosus HN001]
          Length = 458

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 26/218 (11%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML--EWVLAATKG 208
           ++GR  K+K    RDY+ ++L   G       +  SF Q N  I   +L  + + AA   
Sbjct: 256 ILGR--KSKTIYGRDYLLDKLL--GSEFQISPV--SFYQVNP-IQTEVLYTKAIEAAALT 308

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  +++ Y G G  SL +ARH  +V  VE+ + +V  A+ N A NH+ NV         
Sbjct: 309 GKETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTF------- 361

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNP 325
             +  + E    + KD D+       + VDPPR GLD      VG ++  P ++YISCNP
Sbjct: 362 --EVGKAEDVMQKWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKP-PKMVYISCNP 415

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
            +L RDL +L+   +T +     D FP T+H+E   LL
Sbjct: 416 ATLARDLQLLAAFGYTAKETQPVDMFPQTQHIESVTLL 453


>gi|312881712|ref|ZP_07741489.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309370602|gb|EFP98077.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 439

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 17/185 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N+F Q N  +N  M++  L+     Q D +L+L+CG GNFSL +A+    V+ VE     
Sbjct: 268 NNFIQVNQMVNKAMIDQALSWLDINQSDRVLDLFCGLGNFSLPIAQRVKSVIGVEGIDVM 327

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N   NH+NN +  + + +E +      +E            +F  + +DP R+G
Sbjct: 328 VKKASENAKLNHLNNAEFFQANLEESSTKFSWAQE------------KFDKVLLDPARAG 375

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
                +  + ++    ++Y+SCNP +L RD  S+++  + +ERL + D FP+T H+E   
Sbjct: 376 A-SVIIDQISSFGASKVVYVSCNPATLARDSQSLIAQGYKLERLGMLDMFPHTSHLESMA 434

Query: 361 LLVRK 365
           L V++
Sbjct: 435 LFVKE 439


>gi|258539292|ref|YP_003173791.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|257150968|emb|CAR89940.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 453

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 26/214 (12%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
           ++GR  K+K    RDY+ ++L   G       +  SF Q N  I   +L        G+ 
Sbjct: 253 ILGR--KSKTIYGRDYLLDKLL--GSEFQISPV--SFYQVNP-IQTEVLYTKAIEAAGLT 305

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G   +++ Y G G  SL +ARH  +V  VE+ + +V  A+ N A NH+ NV         
Sbjct: 306 GKETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTF------- 358

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNP 325
             +  + E    + KD D+       + VDPPR GLD      VG ++  P ++YISCNP
Sbjct: 359 --EVGKAEDVMQKWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKP-PKMVYISCNP 412

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            +L RDL +L+   +T +     D FP T+H+E 
Sbjct: 413 ATLARDLQLLTAFGYTAKETQPVDMFPQTQHIES 446


>gi|229514078|ref|ZP_04403540.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TMA
           21]
 gi|229349259|gb|EEO14216.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TMA
           21]
          Length = 440

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVVQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|254291652|ref|ZP_04962440.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           AM-19226]
 gi|150422424|gb|EDN14383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           AM-19226]
          Length = 440

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|229521280|ref|ZP_04410700.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TM
           11079-80]
 gi|229341812|gb|EEO06814.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TM
           11079-80]
          Length = 440

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|297581076|ref|ZP_06943001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae RC385]
 gi|297534902|gb|EFH73738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae RC385]
          Length = 440

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|153831307|ref|ZP_01983974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           623-39]
 gi|148873209|gb|EDL71344.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           623-39]
          Length = 440

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|254226236|ref|ZP_04919829.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae V51]
 gi|125621209|gb|EAZ49550.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V51]
          Length = 440

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|15642448|ref|NP_232081.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121591386|ref|ZP_01678669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           2740-80]
 gi|153819816|ref|ZP_01972483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae NCTC
           8457]
 gi|227082573|ref|YP_002811124.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae M66-2]
 gi|229507488|ref|ZP_04396993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae BX
           330286]
 gi|229512317|ref|ZP_04401796.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae B33]
 gi|229519453|ref|ZP_04408896.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC9]
 gi|229606993|ref|YP_002877641.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae
           MJ-1236]
 gi|254849576|ref|ZP_05238926.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Vibrio cholerae MO10]
 gi|255746877|ref|ZP_05420822.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholera CIRS
           101]
 gi|262162042|ref|ZP_06031058.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae INDRE
           91/1]
 gi|298500191|ref|ZP_07009996.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MAK
           757]
 gi|20140289|sp|Q9KPC1|RUMA_VIBCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|254766923|sp|C3LQZ5|RUMA_VIBCM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|9657029|gb|AAF95594.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121546765|gb|EAX56937.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           2740-80]
 gi|126509635|gb|EAZ72229.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae NCTC
           8457]
 gi|227010461|gb|ACP06673.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae M66-2]
 gi|229344142|gb|EEO09117.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC9]
 gi|229352282|gb|EEO17223.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae B33]
 gi|229354993|gb|EEO19914.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae BX
           330286]
 gi|229369648|gb|ACQ60071.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae
           MJ-1236]
 gi|254845281|gb|EET23695.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Vibrio cholerae MO10]
 gi|255735279|gb|EET90679.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholera CIRS
           101]
 gi|262028291|gb|EEY46948.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae INDRE
           91/1]
 gi|297540884|gb|EFH76938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MAK
           757]
          Length = 440

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVVQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|113460243|ref|YP_718301.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus somnus
           129PT]
 gi|123327082|sp|Q0I127|RUMA_HAES1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|112822286|gb|ABI24375.1| 23S rRNA m(5)U-1939 methyltransferase [Haemophilus somnus 129PT]
          Length = 439

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N +M    L+W+    K    ++L+L+CG GNF+L ++R+    + +E   P
Sbjct: 269 FIQVNRQLNQNMVNTALDWLDLKKKD---NVLDLFCGMGNFTLPISRYVKSAVGIEGVLP 325

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            VE AR N   NH +NV+  +   S+ FT     E+E+ ++         F  I +DPPR
Sbjct: 326 MVEKARRNGERNHCHNVQFYQCDLSQSFT-----EQEWAKVP--------FDKILLDPPR 372

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECG 359
           SG   A   +       I+Y+SCNP +L RD+  +L   + ++++A+ D FP+T H+E  
Sbjct: 373 SGAAFALNALCYLMAEKIVYVSCNPATLVRDVELLLKFGYQLKKVAMIDMFPHTSHLESI 432

Query: 360 VLLVR 364
            L  R
Sbjct: 433 SLFER 437


>gi|325577293|ref|ZP_08147777.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160875|gb|EGC72996.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 436

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 17/182 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N+ M+E  L      Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 268 FIQVNTHLNLQMVETALDWLDLNQDDHVLDLFCGMGNFTLPLAKRVKSAVGIEGVFDMVQ 327

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A+ N   NH+ NV+  +    + F++    ++ FN+             I +DPPRSG 
Sbjct: 328 KAQTNAQFNHIENVEFYQADLDQAFSEQPWAKQHFNK-------------ILLDPPRSGA 374

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL S  + I + A+ D FP+T H+E   L 
Sbjct: 375 AFALNALCELCAEKILYVSCNPATLVRDAEILRSFGYRIIKTAMIDMFPHTSHLESVTLF 434

Query: 363 VR 364
           ++
Sbjct: 435 IK 436


>gi|71278294|ref|YP_270771.1| 23S rRNA (Uracil-5-)-methyltransferase [Colwellia psychrerythraea
           34H]
 gi|123631176|sp|Q47WQ1|RUMA_COLP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|71144034|gb|AAZ24507.1| 23S rRNA (Uracil-5-)-methyltransferase [Colwellia psychrerythraea
           34H]
          Length = 469

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 96/182 (52%), Gaps = 14/182 (7%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            N F Q N  +N  M+   LA    +  D +L+L+CG GNFSL LA+H  RV+ VE  + 
Sbjct: 295 SNDFIQINHQVNNAMISQALAWLNILATDNVLDLFCGLGNFSLALAKHAKRVVGVEGMQT 354

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V+ A  N   N ++N         +F QA   +   + L +  +    F  + +DP R+
Sbjct: 355 MVDKATQNSLVNGLDNC--------QFYQA---DLNSHWLLEPWVQGQVFDKVLLDPARA 403

Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G + A   + +   P +LY+SC+P +L RD +IL S  + +E+++L D F  T+H+E  +
Sbjct: 404 GAEQAVSQIAELKIPCVLYVSCDPATLARDSAILVSKGYKLEKISLMDMFSQTKHVETMI 463

Query: 361 LL 362
           L 
Sbjct: 464 LF 465


>gi|170718282|ref|YP_001785299.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus somnus
           2336]
 gi|168826411|gb|ACA31782.1| RNA methyltransferase, TrmA family [Haemophilus somnus 2336]
          Length = 439

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 98/185 (52%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N +M    L+W+    K    ++L+L+CG GNF+L ++R+    + +E   P
Sbjct: 269 FIQVNRQLNQNMVNTALDWLDLKKKD---NVLDLFCGMGNFTLPISRYVKSAVGIEGVLP 325

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            VE AR N   NH +NV+  +   S+ FT     E+E+ ++         F  I +DPPR
Sbjct: 326 MVEKARRNGERNHCHNVQFYQCDLSQSFT-----EQEWAKVP--------FDKILLDPPR 372

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECG 359
           SG   A   +       I+Y+SCNP +L RD+  +L   + ++++A+ D FP+T H+E  
Sbjct: 373 SGAAFALNALCYLMAEKIVYVSCNPATLVRDVELLLKFGYQLKKVAMIDMFPHTSHLESI 432

Query: 360 VLLVR 364
            L  R
Sbjct: 433 SLFER 437


>gi|194016025|ref|ZP_03054640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
           7061]
 gi|194012380|gb|EDW21947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
           7061]
          Length = 460

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           + DE   + G   IY  I +        SF Q N      + +  L   + +QG+  +++
Sbjct: 260 FGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPAQTKVLYDKALEYAE-LQGEEIVID 318

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  SL LA+   RV  VEI   ++E A+ N A N +NNV+     ++       +
Sbjct: 319 AYCGIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNEINNVEFAVGEAETVIPNWYK 378

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333
           E              +  T+ VDPPR G D+A +  + +  P  ++Y+SCNP +L RDL 
Sbjct: 379 E------------GIKADTLVVDPPRKGCDEALLDTILKMKPKRVVYVSCNPGTLARDLR 426

Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           IL    +  E +   D FP+T H+EC   LV
Sbjct: 427 ILEDGGYVTEEVQPVDMFPHTAHVECVASLV 457


>gi|242278181|ref|YP_002990310.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM
           2638]
 gi|242121075|gb|ACS78771.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM
           2638]
          Length = 465

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 107/206 (51%), Gaps = 19/206 (9%)

Query: 164 RDYVDERLTVA-GRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNG 221
           ++++ E LT A G  + YR   N+F Q N+ G  V   +    A       + +L+CG+G
Sbjct: 272 QEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRKSSELAAPKADDVVWDLFCGSG 331

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              + +A+   +++ +E+++ SV++A+ N A N + N + +          +  E+    
Sbjct: 332 GIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQYI-------VGNLASEKGLPE 384

Query: 282 -LKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTT 338
            L   D+       + VDPPRSG+ D ++  +++  P  ILYISCNP +L RD + +   
Sbjct: 385 DLPHPDM-------VIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTLARDAAKMEGR 437

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +ER A  D FP+T H+E   LL +
Sbjct: 438 YKLERFAAVDMFPHTAHVESIALLTK 463


>gi|116747738|ref|YP_844425.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116696802|gb|ABK15990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Syntrophobacter
           fumaroxidans MPOB]
          Length = 488

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 18/228 (7%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           +H+   +   +   +++++      ++ERL      L +R    SF Q N      + + 
Sbjct: 274 VHSVSRKKAQVAFGDQSRVVAGPGVIEERLG----GLRFRISAESFFQTNPFSAEKLYDE 329

Query: 202 V--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V  LAA +G +  + +LYCG G+ +L +A    RV+  E+   ++E A  N   N + N 
Sbjct: 330 VSRLAAFQGTE-TVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGIENA 388

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-H 317
           + +    KE     R         DI         +  DPPR+G+    VG +++  P  
Sbjct: 389 RFISGDLKERINHARGPGSGEHHPDI---------VITDPPRAGMHPQVVGALLEMGPGR 439

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           I+Y+SCNP +L RDL+  +  + I  +  FD FP+T H+EC V + RK
Sbjct: 440 IIYVSCNPATLARDLAFFTERYEIGTVRPFDLFPHTPHIECVVRMDRK 487


>gi|261211546|ref|ZP_05925834.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC341]
 gi|260839501|gb|EEX66127.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC341]
          Length = 440

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 21/191 (10%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEI 239
           R + N F Q N  +N  M+E  L   +  + D +L+L+CG GNF+L LA     V+ +E 
Sbjct: 264 RFLPNHFIQVNRSVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAAQAQEVVGIEG 323

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIF 296
            +  V+ A +N   N +NNV         F QA       N  +D+   S+   +F  + 
Sbjct: 324 VEEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTNASWAQQKFAKVL 368

Query: 297 VDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTR 354
           +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+T 
Sbjct: 369 LDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFHLEKLGMLDMFPHTS 428

Query: 355 HMECGVLLVRK 365
           H+E   L V+K
Sbjct: 429 HLESMALFVKK 439


>gi|88797954|ref|ZP_01113541.1| 23S rRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297]
 gi|88779151|gb|EAR10339.1| 23S rRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297]
          Length = 414

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 146/331 (44%), Gaps = 49/331 (14%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
           S P+ YR RA FH+   G   +H         R R    +    +I   +  ++  +R E
Sbjct: 127 SAPVGYRHRARFHLSKSGTLGFH-------GARGRQVIPVEQCPVITTELQALLDRVRRE 179

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             L+  L Q++                  +DDA +  A  ++ +  AR+   Q       
Sbjct: 180 APLKG-LQQLELT----------------VDDAGKAGARAVKASDSARQAFEQWQNA--- 219

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
                 +D++ E LT    T +       FTQ N  IN  ML+ +    +  + D LL+L
Sbjct: 220 ------QDWLTEELTYQAGTQVVTARPGDFTQVNREINQQMLKQIRQWLQPREDDRLLDL 273

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           +CGNGN SL +      +L +E + P++EAA+  +     ++ K   + +  FT  ++  
Sbjct: 274 FCGNGNISLAMLDEVAAILGLESSGPAIEAAKAAVK----HHPKAQFLEADLFTSCLQVR 329

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT--VGMVQAYPHILYISCNPDSLCRDLSI 334
            +        +  +      +DPPR+G +     +  + +   ++Y+SC+P +L RDL+ 
Sbjct: 330 PQ--------VAEFAPTIAVLDPPRAGAEQVVQWLSELPSLTRLVYVSCDPATLARDLAQ 381

Query: 335 LSTTH-TIERLALFDQFPYTRHMECGVLLVR 364
           L+  H  + +  L D FP TRH+E  VLL +
Sbjct: 382 LTADHWHLRKAGLIDMFPQTRHIETMVLLKK 412


>gi|157691441|ref|YP_001485903.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|157680199|gb|ABV61343.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
          Length = 465

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 26/211 (12%)

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           + DE   + G   IY  I +        SF Q N      + +  L   + +QG+  +++
Sbjct: 260 FGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPAQTKMLYDKALEYAE-LQGEETVID 318

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  SL LA+   RV  VEI   ++E A+ N A N +NNV+     ++       +
Sbjct: 319 AYCGIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNGINNVEFAVGEAETVIPNWYK 378

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333
           E              +  T+ VDPPR G D+A +  + +  P  ++Y+SCNP +L RDL 
Sbjct: 379 E------------GIKADTLVVDPPRKGCDEALLDTILKMKPKRVVYVSCNPGTLARDLR 426

Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           IL    +  E +   D FP+T H+EC   L+
Sbjct: 427 ILEDGGYVTEEVQPVDMFPHTSHVECVAQLI 457


>gi|304399230|ref|ZP_07381097.1| RNA methyltransferase, TrmA family [Pantoea sp. aB]
 gi|304353284|gb|EFM17664.1| RNA methyltransferase, TrmA family [Pantoea sp. aB]
          Length = 438

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 116/238 (48%), Gaps = 24/238 (10%)

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY---RQIE-----NSF 187
           +R  DALH    + +L   ++K ++ L  D  DE LT    ++ +    Q++       F
Sbjct: 211 LRHLDALHTDDRE-KLEQFSHKHQLMLFLDAGDENLTALSESMPFYHSHQLKLTFNPQDF 269

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N G+N  M+   +A       D +L+L+CG GNF+L +      V+ VE     V  
Sbjct: 270 IQVNDGVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGIFVQNVVGVEGIAALVRQ 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A YN   N++ NV   + + +E         E +R       +  F  + +DP R+G   
Sbjct: 330 AAYNADLNNLKNVSFFQHNLEE---------EVSRQP---WATQGFNKVLLDPARAGAAG 377

Query: 307 ATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
               +V+  P  ++Y+SCNP +L RD  I LS  + +ER+A+ D FP+TRH+E  VL 
Sbjct: 378 VMAHVVKLAPERVVYVSCNPTTLARDSQILLSAGYQLERVAMLDMFPHTRHLESMVLF 435


>gi|251793349|ref|YP_003008077.1| 23S rRNA 5-methyluridine methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534744|gb|ACS97990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aggregatibacter
           aphrophilus NJ8700]
          Length = 438

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 23/186 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NA +N  M    L+W+   +   Q  +L+L+CG GNF+L L+R     + +E    
Sbjct: 269 FIQINADLNRQMITTALDWL---SLNSQDHVLDLFCGMGNFTLPLSRKVKSAVGIEGVSA 325

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            VE AR N   N   NV+  +    + F      ++ FN+             I +DPPR
Sbjct: 326 MVEKARANAERNRCANVQFYQADLEQPFISQPWAQQPFNK-------------ILLDPPR 372

Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECG 359
           +G   A   + Q A   ILY+SCNP +L RD  I L+  + ++++A+ D FP+T H+E  
Sbjct: 373 TGAAFALQALCQLAAEKILYVSCNPATLVRDTEILLNAGYQLDKVAMIDMFPHTGHLESI 432

Query: 360 VLLVRK 365
            L  +K
Sbjct: 433 SLYQKK 438


>gi|325508852|gb|ADZ20488.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
           acetobutylicum EA 2018]
          Length = 453

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 23/233 (9%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L+  LH     +  + R +K      +DY+ ER+      L ++    SF Q N+    
Sbjct: 238 ELKGILHVINDGLADMVRGDKIVTLFGQDYITERIL----DLKFKISLFSFFQTNSKGAE 293

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   VL     +    + +LYCG G    + ++  ++V+ +E+ + +VEAA+ N   N+
Sbjct: 294 KLYSEVLEFLGDVSNKTVFDLYCGTGTIGQLASKKAEKVIGIELIEEAVEAAKENTKLNN 353

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++N   +     +    ++ + +               TI +DPPR G+    +  V  +
Sbjct: 354 ISNCSFIAGDVAKVITEIKEKPD---------------TIILDPPRPGVSPNAMKYVIKF 398

Query: 316 --PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             P I+Y+SCNP +L  DL +L +  + +E++ + D FP T H+E  VLL RK
Sbjct: 399 NAPEIVYVSCNPKTLVNDLGVLRAYGYEVEKVKIVDMFPGTGHVETVVLLQRK 451


>gi|15894714|ref|NP_348063.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
           acetobutylicum ATCC 824]
 gi|50401651|sp|Q97J51|Y1435_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C1435
 gi|15024377|gb|AAK79403.1|AE007655_1 S-adenosylmethionine-dependent methyltransferases [Clostridium
           acetobutylicum ATCC 824]
          Length = 456

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 110/233 (47%), Gaps = 23/233 (9%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L+  LH     +  + R +K      +DY+ ER+      L ++    SF Q N+    
Sbjct: 241 ELKGILHVINDGLADMVRGDKIVTLFGQDYITERIL----DLKFKISLFSFFQTNSKGAE 296

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   VL     +    + +LYCG G    + ++  ++V+ +E+ + +VEAA+ N   N+
Sbjct: 297 KLYSEVLEFLGDVSNKTVFDLYCGTGTIGQLASKKAEKVIGIELIEEAVEAAKENTKLNN 356

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++N   +     +    ++ + +               TI +DPPR G+    +  V  +
Sbjct: 357 ISNCSFIAGDVAKVITEIKEKPD---------------TIILDPPRPGVSPNAMKYVIKF 401

Query: 316 --PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             P I+Y+SCNP +L  DL +L +  + +E++ + D FP T H+E  VLL RK
Sbjct: 402 NAPEIVYVSCNPKTLVNDLGVLRAYGYEVEKVKIVDMFPGTGHVETVVLLQRK 454


>gi|315635030|ref|ZP_07890311.1| 23S rRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC
           33393]
 gi|315476292|gb|EFU67043.1| 23S rRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC
           33393]
          Length = 438

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 166/359 (46%), Gaps = 36/359 (10%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD--LYHIMFDQQTKERM 71
           L +++ RL+ + + F    + + + EP HYR R    +  D  +  L   +  + +++ +
Sbjct: 108 LVQRLSRLQPVPIHF----MPLLQGEPWHYRRRVRLSVLLDSKNRKLNIGLRRKNSQQII 163

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDA 130
            I++ +     +N L+ ++ A    +  +  +L  I+ + +  D  I  L+ H + + + 
Sbjct: 164 PIEHCLVLEQPLNDLLPKLTALFS-QWSMPQQLGHIELVAA--DNGIAMLLRHIKNVGET 220

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            R   +R      A ++Q+ L  + + +   ++  Y ++     G  +  +     F Q 
Sbjct: 221 DRTLLLRF-----AEQHQLMLFVQEHDS---IEHWYGEQPYYRLGDDITLQFDIRDFIQI 272

Query: 191 NAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           NA +N  M+   L   +   Q  +L+L+CG GNF+L L+R     + +E     VE AR 
Sbjct: 273 NAQLNRQMIATALDWLELNPQDHVLDLFCGMGNFTLPLSRKVKSAVGIEGVSAMVEKARA 332

Query: 250 NIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           N   N  +NV+  R    K F      ++ FN+             I +DPPR+G   A 
Sbjct: 333 NAERNGCHNVQFYRTDLDKPFISQAWAQQPFNK-------------ILLDPPRTGAAFAL 379

Query: 309 VGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + Q     ILY+SCNP +L RD  IL    + ++++A+ D FP T H+E  + L RK
Sbjct: 380 NALCQLQAESILYVSCNPATLVRDTEILRDAGYQLDKVAMIDMFPQTGHLE-SISLFRK 437


>gi|225851134|ref|YP_002731368.1| 23S rRNA (uracil-5-)-methyltransferase [Persephonella marina EX-H1]
 gi|225645087|gb|ACO03273.1| 23S rRNA (uracil-5-)-methyltransferase [Persephonella marina EX-H1]
          Length = 421

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 173/375 (46%), Gaps = 60/375 (16%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNL----QIFRSE-PIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE+Q+  K + L + +      N+    +I+ S+ P +YR R +  I  +    Y     
Sbjct: 81  YEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYRNRTQLKIRGEKIGFYM---- 136

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID--YLTSQSD-QAIVTL 121
           +++++ + ID      LL+   +  M++ +R   +L+  +FQ +  ++ S SD +A+V  
Sbjct: 137 RESRQIINID----SCLLLKEDINGMISGVR--EILKFLIFQPEQVHIYSSSDGEALVKF 190

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +Y + +    R   + L+   H R +   L  +     I   +D + +R  + G + IY 
Sbjct: 191 VYQKRV----RRFPLGLK---HLRSF---LSEKLKGAGIYHRKDDLLKRDVLLGESYIYE 240

Query: 182 QIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARH 230
           +          +SF Q    +NV+ +E +L A     GD    ++L+CG G  +L  AR+
Sbjct: 241 EYGGIKFRVSMDSFFQ----VNVYQVENLLDAVLQNIGDHEKAVDLFCGVGTLTLPSARY 296

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              +  +E    +V  A +N   N + N K  RM +        R   F       I   
Sbjct: 297 IKEIYGIESNPYAVNDANHNRKLNRIKNAKFFRMDAN-------RSGGF-------IAEL 342

Query: 291 RFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
           +   + +DPPR+G+ D  V       +   I+Y+SCNP +L RDL  L   +++E++ + 
Sbjct: 343 KPDLVIIDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYLKERYSVEKVYMI 402

Query: 348 DQFPYTRHMECGVLL 362
           D FP T H+E  V+L
Sbjct: 403 DMFPQTYHIESVVVL 417


>gi|229524438|ref|ZP_04413843.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae bv.
           albensis VL426]
 gi|229338019|gb|EEO03036.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae bv.
           albensis VL426]
          Length = 440

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +++L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|153214523|ref|ZP_01949432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 1587]
 gi|124115325|gb|EAY34145.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae 1587]
          Length = 440

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +++L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|153803087|ref|ZP_01957673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-3]
 gi|124121369|gb|EAY40112.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           MZO-3]
          Length = 440

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N HM    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQHMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +++L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|293401235|ref|ZP_06645379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305361|gb|EFE46606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 535

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 85/158 (53%), Gaps = 16/158 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++LYCG G  S+ LA+   +V+ +EI + +V  AR N A N ++NV+ V   +  + + 
Sbjct: 300 VIDLYCGVGTISMFLAQKAGKVIGIEIVEQAVRDARENAALNGLDNVEFVCSDAAAYAKK 359

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M  +              R   + VDPPR G D  T+  +VQ  P  ++Y+SC+P +L R
Sbjct: 360 MSEQ------------GGRADVVVVDPPRKGCDQVTLDSIVQMAPERLVYVSCDPATLAR 407

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366
           DL IL    + +E +   D FP T H+E  VLL  +KP
Sbjct: 408 DLRILEGKGYRVEVVQPVDMFPGTHHVETVVLLSQQKP 445


>gi|88858179|ref|ZP_01132821.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas tunicata
           D2]
 gi|88819796|gb|EAR29609.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas tunicata
           D2]
          Length = 440

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 175/379 (46%), Gaps = 56/379 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +  QQL EK   + Q+   F    Q+       S P+HYR  A   +++D          
Sbjct: 96  ELSQQLVEKQHAVTQLFNKFAKIDQLNWQPAIESAPLHYRRSARIAVFYD---------- 145

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ--SDQAIVTL- 121
            + K    + +   GS  I  +    +  IR + + R    +   L  Q  + QAI  L 
Sbjct: 146 -KVKRSFNVGFRQKGSKKIVDIGQCDVLDIRYQAVFR----EFSSLLPQLKNGQAITHLQ 200

Query: 122 ---------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                    +   +   A  + A   R  L   ++ + L G+A + ++    D       
Sbjct: 201 LCGVEHAHLVVRHIAPLAASDIAAIERVCL-THQWLLVLQGQAGEVEL---NDLAPPSYQ 256

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLA 228
           ++ ++L +    ++F Q NA +N  ML     W LA  K  +  +L+L+CG GNFSLV+A
Sbjct: 257 LSEQSLRFEFGLDNFIQVNAAVNQQMLSQAINW-LALDKNEK--VLDLFCGIGNFSLVMA 313

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
            +   V+ VE  + SV+ A++N A N ++N +      ++ +Q M  +  F+   D+   
Sbjct: 314 TNALAVVGVEGVESSVQMAKHNSALNQLSNTQFY---CQDLSQDMASQAWFSEHYDV--- 367

Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILS-TTHTIERLAL 346
                 + +DP R+G  +    + ++ +  ILY+SC+P +L RD  +++    T++++AL
Sbjct: 368 ------LVLDPSRTGAFEILQQLKLKRFKRILYVSCDPVTLARDSQLITQAGFTLDKIAL 421

Query: 347 FDQFPYTRHMECGVLLVRK 365
            + FP+T H+E  VL V++
Sbjct: 422 MNMFPHTGHIETMVLFVKR 440


>gi|312962346|ref|ZP_07776837.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens
           WH6]
 gi|311283273|gb|EFQ61863.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens
           WH6]
          Length = 450

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 35/205 (17%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNF 223
           RL      L YR     F Q NAG+N  M    LEW+       Q D  +L+L+CG GNF
Sbjct: 266 RLEAWDLALAYR--PGDFVQVNAGVNEAMVTQALEWLAP-----QPDDRVLDLFCGLGNF 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L LA+    V+AVE  +  VE A  N  +N+++NV+  +    + +Q          L 
Sbjct: 319 ALPLAKQVREVVAVEGVQTMVERAALNAVSNNLDNVQFFQ---ADLSQP---------LT 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDD-----ATVGMVQAYPHILYISCNPDSLCRD-LSILST 337
           D +     F  + +DPPR G  +     AT+G  +    ++Y+SCNP +L RD + ++  
Sbjct: 367 DAEWAKQGFSAVLLDPPRDGAQEVVRKLATLGARR----LVYVSCNPATLARDTVELVKQ 422

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            + ++R  + D FP T H+E   L 
Sbjct: 423 GYRLKRAGILDMFPQTAHVEAMALF 447


>gi|326804225|ref|YP_004322043.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650285|gb|AEA00468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 465

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 20/215 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
           A++ ++   RDY+ + L        YR   ++F QPN      M++         Q  L 
Sbjct: 266 ADQVEVLAGRDYICDELA----GFNYRLYFDTFFQPNPVQAQRMIDLACDWADLDQDSLV 321

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++L+CG G FSL LA+    ++ +EI + S+E+A+ N   N + N   +   ++      
Sbjct: 322 IDLFCGVGTFSLPLAKRAKALVGIEIVEQSIESAKRNARDNGIENAHFIARDAR------ 375

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331
                 + L +I+    +   + +DPPR+G     +  +       I+Y+SCNP +L +D
Sbjct: 376 ------HGLAEIEAEWGQADLLLLDPPRNGAGGKIMRRIGRLGLEKIIYVSCNPKTLAQD 429

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           L+ L    + I +  L DQFP+T+H+E  VL+ +K
Sbjct: 430 LAWLRDFGYEISKFQLVDQFPHTQHVEAVVLIEKK 464


>gi|260899635|ref|ZP_05908030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ4037]
 gi|308110556|gb|EFO48096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ4037]
          Length = 439

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 162/380 (42%), Gaps = 64/380 (16%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y+QQL  K   LRQ+M  F   ++ +      E + YR RA   ++ D      + F  +
Sbjct: 98  YDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156

Query: 67  TKERMRIDYFMPGSLL---INALMIEMMATI----RLEPLLRAKLFQIDYLTSQSDQAIV 119
            K+  +I       +L   +NAL+ E+ + +    + E L   +L   D      +   +
Sbjct: 157 KKQSKQIAQVTDCPVLAPELNALLPEIYSVLTAFKKPEQLGHVELVLGD------NGPCI 210

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL Y   L D      + L     A ++Q  L       ++ L          VAG    
Sbjct: 211 TLRYLSNLADEEVSALVEL-----ATRHQASLYLMPETDQLNL----------VAGEMPF 255

Query: 180 YRQI-------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARH 230
           Y++         N+F Q N  +N  M+E  +      Q D  +L+L+CG GNFSL +A+ 
Sbjct: 256 YQEAGVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDP-QSDERVLDLFCGLGNFSLPIAKR 314

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V+ VE     VE A  N + N +NN         +F  A       N  +D D  ++
Sbjct: 315 AKHVVGVEGVAEMVEKASNNASLNQINNA--------QFYHA-------NLEQDFDGQAW 359

Query: 291 ---RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL-SILSTTHTIERL 344
               F  + +DP R+G     +  V A     ++Y+SCNP +L RD  S+L   + + +L
Sbjct: 360 AAENFDKVLLDPARAGA-SGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKL 418

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   L  +
Sbjct: 419 GMLDMFPHTSHLESMALFEK 438


>gi|52841686|ref|YP_095485.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|60404654|sp|Q5ZVI4|RUMA_LEGPH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|52628797|gb|AAU27538.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 444

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ NA +N  M+   +   +    D+ L+L+CG GNFSL +A+H  RV+ VE  K  
Sbjct: 272 NDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNM 331

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A  N  +NH+ NV     +  +  +              ++ +  F  + +DPPRSG
Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVR------------NLVNTSFSKVLIDPPRSG 379

Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360
             +    +    P  I+Y+SCNP +L RD  IL     + +    + D FP+T H+E   
Sbjct: 380 ALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIA 439

Query: 361 LL 362
           L 
Sbjct: 440 LF 441


>gi|301154942|emb|CBW14405.1| 23S rRNA (uracil-5)-methyltransferase [Haemophilus parainfluenzae
           T3T1]
          Length = 436

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 91/182 (50%), Gaps = 17/182 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+E  L      Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 268 FIQVNTRLNQQMVETALDWLDLNQDDHVLDLFCGMGNFTLPLAKRVKSAVGIEGVLDMVK 327

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A+ N   NH+ NV+  +    + F++    ++ FN+             I +DPPRSG 
Sbjct: 328 KAQANAQFNHIENVEFYQADLDQSFSEQPWSKQHFNK-------------ILLDPPRSGA 374

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL S  + I + A+ D FP T H+E   L 
Sbjct: 375 AFALNALCELGAESILYVSCNPATLVRDAEILRSFGYRIIKTAMIDMFPNTSHLESVTLF 434

Query: 363 VR 364
           ++
Sbjct: 435 IK 436


>gi|15603731|ref|NP_246805.1| 23S rRNA 5-methyluridine methyltransferase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|20140227|sp|Q9CJX3|RUMA_PASMU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|12722294|gb|AAK03950.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 437

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 23/178 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NA +N  M    LEW+   +     ++L+L+CG GNF+L ++R  ++V+ +E    
Sbjct: 268 FIQVNAVVNQKMIDTALEWLELTSND---NVLDLFCGMGNFTLPISRQVNQVVGIEGVGE 324

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            VE A+ N   N  +NV+  + +  + F Q     + FN+             I +DPPR
Sbjct: 325 MVEKAKRNAEQNQCDNVQFYQANLDQPFVQQHWASQHFNK-------------ILLDPPR 371

Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357
           +G   A   + +     ILY+SCNP +L RD +I L   + ++++A+ D FP T H+E
Sbjct: 372 TGAAFALHALCELGAEKILYVSCNPATLVRDTAILLQFNYRLKKVAMIDMFPNTGHLE 429


>gi|323341240|ref|ZP_08081486.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323091297|gb|EFZ33923.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 469

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 171/383 (44%), Gaps = 48/383 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QL  K  +++ ++    + ++++  +    +P HYR +A+  +     DL    F +
Sbjct: 103 YPAQLKFKQKQIQDLLKKAHLDDIEVAETIGMKDPFHYRNKAQVPVRGTKGDLKTGFFKR 162

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATI---RLEP--------LLRAKLFQIDYLTSQS 114
            +   + ++ F+     I+ ++ E++  +    LEP        ++R  + +I + + ++
Sbjct: 163 GSHNFLPLENFLIQDERIDEILKEVIKVLNAYELEPYDEERHSGMIRHLMVRIGHYSREA 222

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYV 167
              IVT    RL  D  RE A ++  A       +Q + R         KTK+   +D++
Sbjct: 223 MVVIVTK-NGRLPHD--REIAEKIVAACPDVVSVMQNVNRDRTNVILGQKTKLLFGKDHI 279

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
            + L      L +     SF Q N  +    L         + G+   ++ YCG G  SL
Sbjct: 280 KDTLN----GLEFDISAQSFYQVNP-VQTEKLYQTAIKFANLTGEETAIDAYCGIGTISL 334

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  VEI + ++E A+ N   N ++N++   + + E   A  +E+        
Sbjct: 335 SLAEKCRAVYGVEIVEAAIEDAKRNAELNELDNLRF-EVGNAEDWMAKWKEK-------- 385

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIE 342
                R   I VDPPR GL ++ +          I+Y+SCNP +L RD+ S++   + +E
Sbjct: 386 ---GIRPNVIMVDPPRKGLTESLIESATGMNPDRIVYVSCNPATLVRDIQSLMEKGYHVE 442

Query: 343 -RLALFDQFPYTRHMECGVLLVR 364
            R+   DQFP T H+EC  ++ R
Sbjct: 443 GRIQPVDQFPQTAHVECVTVMER 465


>gi|148358986|ref|YP_001250193.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila
           str. Corby]
 gi|296107035|ref|YP_003618735.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila
           2300/99 Alcoy]
 gi|189045733|sp|A5IBU7|RUMA_LEGPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|148280759|gb|ABQ54847.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila
           str. Corby]
 gi|295648936|gb|ADG24783.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila
           2300/99 Alcoy]
          Length = 444

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ NA +N  M+   +   +    D+ L+L+CG GNFSL +A+H  RV+ VE  K  
Sbjct: 272 NDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNM 331

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A  N  +NH+ NV     +  +  +              ++ +  F  + +DPPRSG
Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVR------------NLVNTSFSKVLIDPPRSG 379

Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360
             +    +    P  I+Y+SCNP +L RD  IL     + +    + D FP+T H+E   
Sbjct: 380 ALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIA 439

Query: 361 LL 362
           L 
Sbjct: 440 LF 441


>gi|251794918|ref|YP_003009649.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2]
 gi|247542544|gb|ACS99562.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2]
          Length = 465

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 33/243 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFT 188
           R+R AL   K  +Q +   +   I     + DE   + G  +IY +++         SF 
Sbjct: 242 RIRAALPEVKSIVQNVNTRDTNVI-----FGDETKVLWGSEVIYDELDGIRFAISARSFY 296

Query: 189 QPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           Q N    + +    +  A   G +  +++ YCG G  SL LAR   RV  VEI   ++E 
Sbjct: 297 QVNPSQTIELYRTAVDYAQLTGKE-SVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIED 355

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N   N ++N       +      + R RE   + D+         I VDPPR G D 
Sbjct: 356 AKRNAELNGISNAS---FEAGPAEVVIPRWREEGIIPDV---------IVVDPPRKGCDP 403

Query: 307 ATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362
           A +  + +  P  ++Y+SCNP +L RDL  L      T+E +   D FP+T H+EC V +
Sbjct: 404 ALLDTILKMQPERVVYVSCNPSTLARDLRTLEDGGYKTVE-VTPVDMFPWTSHVECVVWM 462

Query: 363 VRK 365
           VRK
Sbjct: 463 VRK 465


>gi|163802964|ref|ZP_02196851.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4]
 gi|159173254|gb|EDP58082.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4]
          Length = 439

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 167/371 (45%), Gaps = 44/371 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD--DLYHIMF 63
           +Y+QQL  K   LRQ+M  F   ++++      + + YR RA   +  D     L+    
Sbjct: 97  KYDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGDSLSYRRRARVSLLVDKKTRKLHFGFR 156

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
            +Q+K+  ++      +  +N L+ E+ +T++       +L  ++ +   S   I TL +
Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKK-SEQLGHVELVLGDSGPCI-TLRH 214

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
              L D      + L    HA  Y +    + N   I  D  +  E     G T+ +   
Sbjct: 215 LSKLADEETNTLVALARRHHASLYLMPETDQLNL--IEGDVPFYQE----VGVTVPF--T 266

Query: 184 ENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
            N+F Q N  +N  M+    +W+   +      +L+L+CG GNFSL +A+H   V+ VE 
Sbjct: 267 PNNFIQVNQAVNQKMVAQAVDWLDPKS---DERVLDLFCGLGNFSLPIAKHAKHVVGVEG 323

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               VE A  N + N +NN +    +  ++F   +    +F++             + +D
Sbjct: 324 VAEMVEKAANNASLNQINNAQFYHANLEQDFEGQVWAAEQFDK-------------VLLD 370

Query: 299 PPRSG----LDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
           P R+G    +D  +V   Q    ++Y+SCNP +L RD  S+L   + + +L + D FP+T
Sbjct: 371 PARAGASGIIDQVSVLGAQ---RVVYVSCNPATLARDSQSLLGQGYQLTKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 428 SHLESMALFEK 438


>gi|148654529|ref|YP_001274734.1| RNA methyltransferase [Roseiflexus sp. RS-1]
 gi|148566639|gb|ABQ88784.1| RNA methyltransferase, TrmA family [Roseiflexus sp. RS-1]
          Length = 434

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 18/184 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            +F Q N      +L  + A       G LL+LYCG G F+L LAR   +V+ VE    +
Sbjct: 266 TTFFQVNVAAATTLLNLIRAGLGDEAGGRLLDLYCGAGTFTLPLARAAIQVVGVEEYPGA 325

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A  + A NHV+NV+ V   ++    ++  +               F  I +DPPR G
Sbjct: 326 VADAERSAAVNHVSNVRFVVGRAEAVLSSLEGD---------------FDAIVLDPPRRG 370

Query: 304 L-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
                   +++  P  I+Y+SC+P +L RDL  L  ++T+ER    D FP T H+E  V+
Sbjct: 371 CHPQVRQALLERAPRRIVYVSCHPATLARDLHTLIGSYTVERATPVDLFPQTPHVESVVV 430

Query: 362 LVRK 365
           LVR 
Sbjct: 431 LVRS 434


>gi|168181545|ref|ZP_02616209.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
 gi|237796317|ref|YP_002863869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           Ba4 str. 657]
 gi|182674982|gb|EDT86943.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
 gi|229260413|gb|ACQ51446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           Ba4 str. 657]
          Length = 453

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 31/241 (12%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           EC   ++  LH     +  + + +K +I   RDY+ E L      L ++    +F Q N+
Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289

Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  E + +  K   GD     + +LYCG G    ++A    +V+ VE+ + +V+AA
Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVASKAKKVIGVELIEEAVKAA 345

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N +NN + +     +  + ++++ +                I +DPPR G+   
Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  V  +    I+Y+SCNP +L  DL  ++   + +E++   D FP+T H+E  VLL R
Sbjct: 391 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHLETCVLLQR 450

Query: 365 K 365
           K
Sbjct: 451 K 451


>gi|317498564|ref|ZP_07956857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894051|gb|EFV16240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 360

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 25/206 (12%)

Query: 173 VAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGN 222
           V G+  IY  I N        SF Q N      + E  +  A  KG +  + +LYCG G 
Sbjct: 165 VYGKPYIYDYIGNVKYQIGPLSFFQVNPTQTKVLYEKAMEYADLKG-EEIVWDLYCGIGT 223

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+   +V  VEI K +++ AR N   N  +N +     ++E    + RE E N +
Sbjct: 224 ISLFLAQKAKKVYGVEIVKEAIDDARLNAKMNGFDNAEFFVGKAEE---VLPREYEKNGV 280

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-TH 339
                      TI VDPPR G D   +  MV+  P  I+Y+SC+P +L RDL +LS   +
Sbjct: 281 --------YADTIVVDPPRKGCDSKLLETMVKMAPKRIVYVSCDPATLARDLKVLSEQGY 332

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E++   DQF ++ H+E  VLL R+
Sbjct: 333 EVEKVCAVDQFSHSSHVETCVLLQRR 358


>gi|257467028|ref|ZP_05631339.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918165|ref|ZP_07914405.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692040|gb|EFS28875.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 456

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 166/388 (42%), Gaps = 44/388 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRA-EFHIWHDGDDLYHIM 62
           +YE QL  K   ++++M      N       I   E  HYR +  E    H G  +    
Sbjct: 87  KYEAQLQYKTAMVKEVMERIGKLNSNLVLDCIASPEEKHYRNKVIEPFSKHKGKIITG-F 145

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSD 115
           F +++ E   ++  M  S L N ++         E L        +  L  I   T+ S 
Sbjct: 146 FQRRSHEVFEVEENMLNSKLGNKIIETFKQYANQEKLSVYDEKKHQGLLRNIMIRTNSSQ 205

Query: 116 QAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           +A++ LI + + ++++ ++  +++   +   K  I L     KT + L     D+ + + 
Sbjct: 206 EAMLVLIVNAKKIEESLKKILLQMPKNIPELK-SIYLSLNTRKTNVVLG----DKNICIW 260

Query: 175 GRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
           G   +  ++          SF Q N     H+ E  L+    I+  ++++ Y G G   +
Sbjct: 261 GEKTLKEELFGIHFHISPTSFFQINVPQTKHLYEKALSLIPKIENKNVVDAYSGTGTIGM 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           +L+R   +V A+EI + +          NH++N++ +             E E +RL + 
Sbjct: 321 LLSRKAKKVYAIEIVESASRDGAKTAKENHIDNIEFI---------CGPVEVELDRLLE- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT-HTIE 342
                    I  DPPR G++ + +  V     P ++YISCNP +L RDL I++   + + 
Sbjct: 371 --EGKNLDAIVFDPPRKGIEKSILRKVAEVGIPEMVYISCNPSTLARDLKIMAECGYQVG 428

Query: 343 RLALFDQFPYTRHMECGVLLVRKPSGWH 370
            +  FD FP T H+E  VL+ R P   H
Sbjct: 429 EIQPFDMFPQTSHVESVVLMSRNPEEKH 456


>gi|260775202|ref|ZP_05884100.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608903|gb|EEX35065.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 439

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 180/418 (43%), Gaps = 75/418 (17%)

Query: 1   MSGTLLIDQYEQQLAEKVDRL-RQMMLAFQVPNLQIFRSEPI--HYRMRAEFHIWHDGDD 57
           + G L  +Q   QL E   +  R  ++  Q P+ Q  R EP   HY+     ++ H   +
Sbjct: 42  IEGALPGEQVLAQLTESKSKFSRATLIKVQTPSEQ--RVEPFCPHYQQCGGCNMQHLSSE 99

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT----IRLEPLLRAKLFQIDY-LTS 112
            +  M  QQT  ++ +  F   SL + A ++          R+  ++  K  Q+ +    
Sbjct: 100 -HQQMHKQQTLSQL-MSKFAGQSLNLEAPIVGESEGYRRRARISVMVDKKTRQLKFGFRK 157

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-----RANKTKICL----- 162
           +  + IVTL +  +L     E    L  AL +R  Q + IG     +A+ T+I +     
Sbjct: 158 KQSKDIVTLTHCPVLAPELDELLPDLY-ALLSRFSQQENIGHVELVKADNTRILVLRHLK 216

Query: 163 -----DRDYV----------------DERLTV-AGRTLIYRQI-------ENSFTQPNAG 193
                D D +                +E+L +  G   +Y++         N+F Q N  
Sbjct: 217 PLNNKDHDALLEFAKLNQITLYLMPNNEQLMLETGEAGVYQETGVNIPFEPNNFIQVNQQ 276

Query: 194 INVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +N  M    L+W+  +    Q  +L+L+CG GNFSL +A+    V+ VE     V  A +
Sbjct: 277 VNAQMVTQALDWLALSE---QDRVLDLFCGLGNFSLPIAKQVKSVIGVEGVDEMVSKATH 333

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N ++N +  + + ++        RE            +F  I +DP R+G     V
Sbjct: 334 NAQVNQIDNAQFYQANLEQDMSGQLWARE------------KFDKILLDPARAGA-SGIV 380

Query: 310 GMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             V A     ++Y+SCNP +L RD  S+LS    +++L + D FP+T H+E   L V+
Sbjct: 381 EQVSALGATRVVYVSCNPATLARDSQSLLSQGFELKKLGMLDMFPHTSHLESMALFVK 438


>gi|220916705|ref|YP_002492009.1| (uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954559|gb|ACL64943.1| (Uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 438

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 145/361 (40%), Gaps = 29/361 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           E+ L E + R+ ++          +    P+ YR RA+FH  HD      + F +++ E 
Sbjct: 100 ERSLHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HDRAAGRLVFFRRRSHEP 157

Query: 71  MRI---DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +R+       PG   +   +   +A  RL P    +   +++  +    A   L+     
Sbjct: 158 VRLRECHLLSPGLDALREAVGPALAAARLSP----REVALEWSDAAGRGAAWLLLPEVTA 213

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR--TLIYRQIEN 185
               R  A+ LRD    +   +Q    A   +     D V       GR      R   +
Sbjct: 214 PVRARAEAL-LRDVPSLQGLVLQ----AEGGQPVTAGDPVLRHARAPGRPEAGTQRSRPD 268

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            F Q N G N  ++E  L        D+LEL+CG GNF+  L+     V AVE+  P+++
Sbjct: 269 VFQQANRGANARLVETALELLAPAGEDVLELHCGAGNFTGPLSEQARSVSAVEVQGPALD 328

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR ++      NV+     +    +A  RE            + RF    +DPPR G  
Sbjct: 329 LARADLGG---RNVRFFAGDALALARAFGRE--------AGPGARRFGAALLDPPREGAR 377

Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
                +     P  +Y+SC+P +  RDL + +   + +  +   D FP T H+E   LL 
Sbjct: 378 GIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMFPQTHHVEGVALLE 437

Query: 364 R 364
           R
Sbjct: 438 R 438


>gi|149192073|ref|ZP_01870298.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1]
 gi|148834098|gb|EDL51110.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1]
          Length = 437

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 94/185 (50%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  IN  M    LEW+   +     ++L+L+CG GNF+L LA+   RV+ VE  + 
Sbjct: 269 FIQVNREINSKMVAQALEWLAPESSD---NVLDLFCGLGNFTLPLAKLCQRVVGVEGIQD 325

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V+ A+ N A NH+ NV        EF QA   +     L ++     +F  I +DP R+
Sbjct: 326 MVDWAQQNAALNHLTNV--------EFYQANLEQ----DLSEMSWAKQQFDKILLDPARA 373

Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           G     +  V A     +LY+SCNP +L RD  S++   + + RL + D FP+T H+E  
Sbjct: 374 GA-SGVIDQVSALGATRVLYVSCNPATLARDTQSLIEQGYKLVRLGMMDMFPHTSHLESM 432

Query: 360 VLLVR 364
            L  +
Sbjct: 433 ALFEK 437


>gi|116494563|ref|YP_806297.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           casei ATCC 334]
 gi|116104713|gb|ABJ69855.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           casei ATCC 334]
          Length = 454

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 20/179 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  I   +L        G+ G  ++++ Y G G  SL +ARH   V  VE+ +P+
Sbjct: 282 SFYQVNP-IQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISLTMARHAKHVYGVEVVEPA 340

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   NH++NV      ++E  Q         R KD   +      + VDPPR G
Sbjct: 341 VRDARANAVRNHIDNVTFEVGKAEEVIQ---------RWKD---NELPVDVLMVDPPRKG 388

Query: 304 LDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
           LD +    VG ++  P I+Y+SCN  +L RDL +L+   +T +     D FP T+H+E 
Sbjct: 389 LDKSFIDAVGYMKP-PKIVYVSCNSATLARDLQLLAAFGYTAKETQPVDMFPQTQHIES 446


>gi|167767439|ref|ZP_02439492.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1]
 gi|167710731|gb|EDS21310.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1]
 gi|291558726|emb|CBL37526.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
           SSC/2]
          Length = 457

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 175/398 (43%), Gaps = 71/398 (17%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-VPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           YE+QL  K ++++  +     + N++      +   EP +YR +A+F + +D        
Sbjct: 89  YEKQLEYKFNKVKNCLERIGGLENIEEKMEPILGMEEPFYYRNKAQFPVGYD-------- 140

Query: 63  FDQQTKERMRIDYFMPGSL--LINALMIEMMATIRLEPLLRAKLFQIDYL-----TSQSD 115
                KE   I  F  G    +I+     +   +  + LL+     +DY+     T+  +
Sbjct: 141 -----KEGNLITGFYAGRTHHIIDCTHCMIQHPVNEQILLKV----LDYMKKNNITAYDE 191

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ--------LIGRANKTKIC--LDRD 165
           +    L+ H +    ++   I +   ++  K  ++        L      T IC  ++++
Sbjct: 192 KTHKGLVRHIVTRVGFKTGEIMVCLVVNGSKKNLRNLEMLIDSLTEVEGMTSICVNINKE 251

Query: 166 YVDERLT-----VAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVL--AATKGIQ 210
             +  L      V G+  IY  I N        SF Q N      + E  +  A  KG +
Sbjct: 252 KTNRILGSKIEEVYGKPYIYDYIGNVKYQIGPLSFFQVNPTQTKVLYEKAMEYADLKG-E 310

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +LYCG G  SL LA+   +V  VEI K +++ AR N   N  +N +     ++E  
Sbjct: 311 ETVWDLYCGIGTISLFLAQKAKKVYGVEIVKEAIDDARLNAKMNGFDNAEFFVGKAEE-- 368

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328
             + RE E N +           TI VDPPR G D   +  MV+  P  I+Y+SC+P +L
Sbjct: 369 -VLPREYEKNGV--------YADTIVVDPPRKGCDSKLLETMVKMAPKRIVYVSCDPATL 419

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL +LS   + +E++   DQF ++ H+E  V L RK
Sbjct: 420 ARDLKVLSEQGYEVEKVCAVDQFSHSSHVETVVRLKRK 457


>gi|331003204|ref|ZP_08326711.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330412857|gb|EGG92237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 470

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 13/154 (8%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           ++YCG G  SL LA+    V  VEI   +++ AR N   N++ NVK     ++E      
Sbjct: 320 DMYCGIGTISLFLAKSAKFVYGVEIVDAAIQNARENAKLNNIENVKFFVGKAEEIITG-- 377

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDL 332
            E E   +KDID+       I VDPPR GLD   +  M++  P  I+Y+SC+  +L RDL
Sbjct: 378 -EYENGNIKDIDV-------IVVDPPRKGLDKLAIDTMLKLLPKRIVYVSCDSSTLARDL 429

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            IL    + +++L + DQF  + H E  V++ RK
Sbjct: 430 KILCEKEYELKKLTVVDQFARSYHTESVVVMERK 463


>gi|54294503|ref|YP_126918.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila
           str. Lens]
 gi|59800218|sp|Q5WW81|RUMA_LEGPL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|53754335|emb|CAH15812.1| hypothetical protein lpl1572 [Legionella pneumophila str. Lens]
          Length = 444

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ NA +N  M++  +   +    D+ L+L+CG GNFSL +A+H  RV+ VE  +  
Sbjct: 272 NDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNM 331

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A  N  +NH+ NV     +  +  +              ++ +  F  + +DPPRSG
Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVR------------NLVNTSFSKVLIDPPRSG 379

Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360
             +    +    P  I+Y+SCNP +L RD  IL     + +    + D FP+T H+E   
Sbjct: 380 ALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIA 439

Query: 361 LL 362
           L 
Sbjct: 440 LF 441


>gi|311278256|ref|YP_003940487.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1]
 gi|308747451|gb|ADO47203.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1]
          Length = 433

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 31/190 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q N G+N  M    ++W+      IQ D  +L+L+CG GNF+L LAR    V+ VE  
Sbjct: 264 FIQVNDGVNQKMVATAIDWL-----DIQPDDRVLDLFCGMGNFTLPLARRAASVVGVEGV 318

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE A+ N A N ++NV     + +E               D+   ++    F  I +
Sbjct: 319 PALVEKAQQNAARNGLHNVTFFHENLEE---------------DVTRQAWAKNGFDKILL 363

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +V+  P  ++Y+SCNP +L RD  ++L+  + I+R+A+ D FP+T H
Sbjct: 364 DPARAGASGVMQHVVKLAPRRVVYVSCNPATLARDSEALLAAGYQIQRMAMLDMFPHTGH 423

Query: 356 MECGVLLVRK 365
           +E  VL   K
Sbjct: 424 LESIVLFEHK 433


>gi|293390947|ref|ZP_06635281.1| RNA methyltransferase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951481|gb|EFE01600.1| RNA methyltransferase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 438

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 17/185 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           + F Q NA +N  M+   L      + D +L+L+CG GNF+L +AR     + +E     
Sbjct: 267 SDFIQINAALNRQMINTALDWLALNERDHVLDLFCGMGNFTLPIARRVKSAVGIEGVSAM 326

Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           VE AR N   N  +NV+  +    K F      ++ FN+             I +DPPR+
Sbjct: 327 VEKARRNAERNRCHNVQFDQADLDKSFVNQGWAQQPFNK-------------ILLDPPRT 373

Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G   A   + Q    +ILY+SCNP +L RD  IL +  + ++++A+ D FP+T H+E   
Sbjct: 374 GAAFALNALCQLQAENILYVSCNPATLVRDTEILHNAGYQLDKVAMIDMFPHTGHLESIS 433

Query: 361 LLVRK 365
           L  +K
Sbjct: 434 LFRKK 438


>gi|288933811|ref|YP_003437870.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22]
 gi|288888540|gb|ADC56858.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22]
          Length = 434

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 31/190 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q N G+N  M    LEW+      +Q +  +L+L+CG GNF+L LA    +V+ VE  
Sbjct: 263 FIQVNDGVNQQMVRTALEWL-----DLQPEDRVLDLFCGMGNFTLPLATRAAQVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  R N A N ++NV     + +E               D+   ++    F  + +
Sbjct: 318 PALVEKGRENAALNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  ++Y+SCNP +L RD  ++L   + I+RLA+ D FP+T H
Sbjct: 363 DPARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGH 422

Query: 356 MECGVLLVRK 365
           +E  VL  R+
Sbjct: 423 LESMVLFERR 432


>gi|229846419|ref|ZP_04466527.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|229810512|gb|EEP46230.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|309972509|gb|ADO95710.1| 23S rRNA m5U1939 methyltransferase [Haemophilus influenzae R2846]
          Length = 530

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N A N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAARNQIKNIEFFQADLDQSFVEQPWDNQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E  VLL
Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLETVVLL 435

Query: 363 VR 364
            +
Sbjct: 436 SK 437


>gi|28899340|ref|NP_798945.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363768|ref|ZP_05776537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus K5030]
 gi|260878969|ref|ZP_05891324.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AN-5034]
 gi|260898314|ref|ZP_05906810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus Peru-466]
 gi|50401546|sp|Q87LP5|RUMA_VIBPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|28807576|dbj|BAC60829.1| putative TrmA family RNA methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085240|gb|EFO34935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus Peru-466]
 gi|308090505|gb|EFO40200.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AN-5034]
 gi|308111237|gb|EFO48777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus K5030]
          Length = 439

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 165/381 (43%), Gaps = 66/381 (17%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y+QQL  K   LRQ+M  F   ++ +      E + YR RA   ++ D      + F  +
Sbjct: 98  YDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156

Query: 67  TKERMRIDYFMPGSLL---INALMIEMMATIRL--EPLLRAKLFQIDYLTSQSDQAIVTL 121
            K+  +I       +L   +N L+ E+ + ++   +P    +L  ++ +   +   I   
Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSVLKAFKKP---DQLGHVELVLGDNGPCITLR 213

Query: 122 IYHRLLDD---AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
               L DD   A  E A R + +L+       L+   ++  +            VAG   
Sbjct: 214 HLSNLADDEVSALVELATRHQASLY-------LMPETDQLNL------------VAGEVP 254

Query: 179 IYRQI-------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
            Y++         N+F Q N  +N  M+E  +      Q D  +L+L+CG GNFSL +A+
Sbjct: 255 FYQEAGVKIPFDPNNFIQVNQAVNQKMVEQAIKWLDP-QSDERVLDLFCGLGNFSLPIAK 313

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     VE A  N + N +NN         +F  A       N  +D D  +
Sbjct: 314 RAKHVVGVEGVAEMVEKASNNASLNQINNA--------QFYHA-------NLEQDFDGQA 358

Query: 290 Y---RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL-SILSTTHTIER 343
           +   +F  + +DP R+G     +  V A     ++Y+SCNP +L RD  S+L   + + +
Sbjct: 359 WAAEKFDKVLLDPARAGA-SGIIDQVSALGAQRVVYVSCNPATLARDSQSLLDQGYQLTK 417

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           L + D FP+T H+E   L  +
Sbjct: 418 LGMLDMFPHTSHLESMALFEK 438


>gi|300854061|ref|YP_003779045.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
           ljungdahlii DSM 13528]
 gi|300434176|gb|ADK13943.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
           ljungdahlii DSM 13528]
          Length = 450

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 110/231 (47%), Gaps = 31/231 (13%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + +A+  +I   RDY+ E +      L ++    SF Q N+       E 
Sbjct: 243 LHTVNDNLSDMVKADNVEILYGRDYIMEEIL----GLKFKISPESFFQTNS----RGTEK 294

Query: 202 VLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + A  K   GD     + +LYCG G    VL+   ++V+ VE+ + +V +A  N   N++
Sbjct: 295 LYAMIKDFLGDASSKTVFDLYCGTGTIGQVLSSSVNKVIGVELIEKAVASANENAKLNNI 354

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315
            N + +    K+           N L+D      +   I +DPPR G+    +  V  + 
Sbjct: 355 KNCRFIAGDVKDV---------LNTLED------KPDIIILDPPRPGVHPKALKYVIDFN 399

Query: 316 -PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            P I+Y+SCNP +L +DL++L    + ++++ L D FP+T H+E  V L +
Sbjct: 400 APEIIYVSCNPKTLVQDLNVLIDAGYNVDKVKLMDMFPHTPHVETVVKLSK 450


>gi|299143365|ref|ZP_07036445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517850|gb|EFI41589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 444

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LY G G  + +L R     L +EI K +VE+AR N   N++NNVK +          
Sbjct: 303 LLDLYSGTGTITQILGRKAKSALGIEIVKDAVESARKNAEINNLNNVKFI---------- 352

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
              +  F  +K+++   Y+   I +DPPR G++   +  + ++     LYISCNP +  R
Sbjct: 353 --CDDVFKAVKELE---YKADVIVLDPPREGINPKAIDKIISFRPEKFLYISCNPITFVR 407

Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL I L + + I  L   DQFP T H+E   LL R+
Sbjct: 408 DLKIFLESGYEIIELKALDQFPRTNHIEIISLLSRQ 443


>gi|54297367|ref|YP_123736.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila
           str. Paris]
 gi|59800221|sp|Q5X5A8|RUMA_LEGPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|53751152|emb|CAH12563.1| hypothetical protein lpp1412 [Legionella pneumophila str. Paris]
          Length = 444

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ NA +N  M+   +   +    D+ L+L+CG GNFSL +A+H  RV+ VE  K  
Sbjct: 272 NDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNM 331

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A  N  +NH+ NV     +  +  +               + +  F  + +DPPRSG
Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVR------------SLVNTSFSKVLIDPPRSG 379

Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360
             +    +    P  I+Y+SCNP +L RD  IL     + +    + D FP+T H+E   
Sbjct: 380 ALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIA 439

Query: 361 LL 362
           L 
Sbjct: 440 LF 441


>gi|307610159|emb|CBW99707.1| hypothetical protein LPW_14751 [Legionella pneumophila 130b]
          Length = 444

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 16/177 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ NA +N  M++  +   +    D+ L+L+CG GNFSL +A+H  RV+ VE  +  
Sbjct: 272 NDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNM 331

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A  N  +NH+ NV     +  +  +              ++ +  F  + +DPPRSG
Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVR------------NLVNTSFSKVLIDPPRSG 379

Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
             +    +    P  I+Y+SCNP +L RD  IL     + +    + D FP+T H+E
Sbjct: 380 ALEIVKQIDAIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVE 436


>gi|152984405|ref|YP_001349925.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           PA7]
 gi|150959563|gb|ABR81588.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas aeruginosa
           PA7]
          Length = 452

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 23/192 (11%)

Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           TL YR     F Q NA +N  M    LEW+     G +  +L+L+CG GNFSL LAR   
Sbjct: 275 TLAYR--PGDFVQVNAPVNRLMVRQALEWL---APGAEERVLDLFCGLGNFSLPLARQVA 329

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V+ VE     V  A  N  AN ++N    +    + ++A         L +    +  F
Sbjct: 330 QVVGVEGVAAMVGRASANALANGLDNAHFFQ---ADLSKA---------LAEAPWAAQGF 377

Query: 293 KTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQF 350
             + +DPPR G  +A  GM       ++Y+SCNP +L RD   ++   + ++R  + D F
Sbjct: 378 TAVLLDPPRDGALEAVRGMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDMF 437

Query: 351 PYTRHMECGVLL 362
           P T H+E   L 
Sbjct: 438 PQTAHVEAMALF 449


>gi|153826889|ref|ZP_01979556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-2]
 gi|149739252|gb|EDM53514.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           MZO-2]
          Length = 440

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N  M    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQQMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|332652524|ref|ZP_08418269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae
           bacterium D16]
 gi|332517670|gb|EGJ47273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae
           bacterium D16]
          Length = 452

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 164/394 (41%), Gaps = 72/394 (18%)

Query: 10  YEQQLAEKVDRLRQMM-----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE++L  K DR+   +     L  ++P + +   +P+ YR + +  +             
Sbjct: 90  YEEELTAKWDRVNDALRRLGGLDLELPPV-LGAEDPLRYRNKVQLPV------------- 135

Query: 65  QQTKERMRIDYFMPGS---LLINALMIEMMATIRLEPLLRAKLFQ--IDYLTSQSDQAIV 119
            Q K+ + I YF P S   L +    ++ +A  RL    +A + Q  +      + Q ++
Sbjct: 136 AQGKQGLSIGYFRPRSHDVLDVKDCPLQPLAVTRLREAFKAWMEQWSVPAYDESTCQGLI 195

Query: 120 TLIYHRLLDDAWRECAI-----------RLRDALHARKYQIQLIG-----RANKTKICLD 163
             +Y R        C +            L +AL  RK +  LIG         T + L 
Sbjct: 196 RHLYVRTNQAGQSLCCVVANGKKLPQVSELVEAL--RKAEPGLIGLVLNINQADTNVILG 253

Query: 164 --------RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDL 213
                   +D+++E  T+ G T  +R    SF Q N      +    +  AA  G Q  +
Sbjct: 254 PEYRTLWGQDFLEE--TLCGMT--FRLSVPSFFQINWAQTQRLYAQAVDFAALTG-QETV 308

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LYCG G  SL LA+   RV+  EI   ++E A+ N A N V N +     +      +
Sbjct: 309 LDLYCGIGTISLALAQKAGRVIGAEIVPQAIEDAKANAARNKVENTRFFCGDAGAVAAQL 368

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331
            RE              R + I VDPPR GL      ++   A   I+Y+SC+P +L RD
Sbjct: 369 ARE------------GVRPQVICVDPPRKGLAPEVPAILASMAPERIVYVSCDPATLARD 416

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
              L    +   ++   D FP T H+E  +LLVR
Sbjct: 417 AKRLEELGYRAIKVQAVDLFPRTAHVETVLLLVR 450


>gi|254490826|ref|ZP_05104009.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophaga thiooxidans
           DMS010]
 gi|224463998|gb|EEF80264.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophaga thiooxydans
           DMS010]
          Length = 445

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 19/189 (10%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231
           AG TL +    + FTQ NAGIN  M++  L     IQ +  +L+L+CG GNF+L LA+  
Sbjct: 261 AGLTLNFD--PSDFTQVNAGINEKMIQRALDLLD-IQPEDRILDLFCGLGNFTLPLAKRV 317

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE     V+ A+        NN  + ++++ EF QA   + E   LKD       
Sbjct: 318 TEVVGVEGDLALVKHAQ--------NNALLNQLTNAEFEQADLTQTE---LKDYPWAQKG 366

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTH--TIERLALFD 348
           F  I +DPPRSG  +    +       ++Y+SCNP +L RD   L   H  T+E   + D
Sbjct: 367 FNKILLDPPRSGAFEVLHQLADLGAERLVYVSCNPATLARDAGELVNKHGYTMEAAGIMD 426

Query: 349 QFPYTRHME 357
            FP+T H+E
Sbjct: 427 MFPHTNHVE 435


>gi|327484944|gb|AEA79351.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio cholerae
           LMA3894-4]
          Length = 440

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 29/193 (15%)

Query: 183 IENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           + + F Q N  +N  M    L W+  +    Q  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 266 LPSHFIQVNRAVNQQMVAQALNWLEVSP---QERVLDLFCGLGNFTLPLAKQAQAVVGVE 322

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTI 295
                V+ A +N   N +NNV         F QA       N  +D+   S+   +F  +
Sbjct: 323 GVDEMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
            +DP R+G  +  V  + A     ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 368 LLDPARAGA-EGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|209920234|ref|YP_002294318.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli SE11]
 gi|209913493|dbj|BAG78567.1| putative RNA methyltransferase [Escherichia coli SE11]
          Length = 433

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA+    V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|193065133|ref|ZP_03046207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22]
 gi|194426363|ref|ZP_03058918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171]
 gi|260845431|ref|YP_003223209.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|260856895|ref|YP_003230786.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|192927264|gb|EDV81884.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22]
 gi|194415671|gb|EDX31938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171]
 gi|257755544|dbj|BAI27046.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257760578|dbj|BAI32075.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|323154829|gb|EFZ41022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           EPECa14]
 gi|323159900|gb|EFZ45870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E128010]
          Length = 433

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA+    V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|255280263|ref|ZP_05344818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
 gi|255269354|gb|EET62559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
          Length = 399

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 31/265 (11%)

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-------- 164
           QS Q +V L+    +  +       LR  LH     I L   A KT + L          
Sbjct: 150 QSGQIMVVLVLADPIFPSKNNFVSALRR-LHPEITTIILNINAKKTSMVLGEREKTLYGP 208

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGN 222
            Y+++  T+ G+T  +R    SF Q N  +   +L         + G   +L+ YCG G 
Sbjct: 209 GYIED--TLLGKT--FRISAKSFYQVNP-VQTEVLYQTAIGYAALTGKERVLDAYCGIGT 263

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L+ A     V+ VE+   ++  AR N   N + NVK     + +F   +  E+  N  
Sbjct: 264 IGLLAASQAKEVIGVELNADAIRDARINARRNSITNVKFYNADAGKFMTGL-AEQNIN-- 320

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTH 339
             +D+       +F+DPPR+G D+A +  +V+  P  ++YISCNP++L RDL  L+   +
Sbjct: 321 --VDV-------VFMDPPRAGSDEAFLSSVVKLQPGKVVYISCNPETLARDLKYLTGNGY 371

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +E++   D F +T H+EC VL+ +
Sbjct: 372 KVEKIQPTDMFCFTEHVECVVLMSK 396


>gi|261867310|ref|YP_003255232.1| 23S rRNA 5-methyluridine methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412642|gb|ACX82013.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 438

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 23/186 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NA +N  M    L+W+    +     +L+L+CG GNF+L +AR     + +E    
Sbjct: 269 FIQINAELNRQMINTALDWLALNERE---HVLDLFCGMGNFTLPIARRVKSAVGIEGVSA 325

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            VE AR N   N  +NV+  +    K F      ++ FN+             I +DPPR
Sbjct: 326 MVEKARRNAERNRCHNVQFYQADLDKSFVNQGWAQQPFNK-------------ILLDPPR 372

Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           +G   A   + Q    +ILY+SCNP +L RD  IL +  + ++++A+ D FP+T H+E  
Sbjct: 373 TGAAFALNALCQLQAENILYVSCNPATLVRDTEILRNAGYQLDKVAMIDMFPHTGHLESI 432

Query: 360 VLLVRK 365
            L  +K
Sbjct: 433 SLFRKK 438


>gi|327395011|dbj|BAK12433.1| 23S rRNA 5-methyluridine methyltransferase RumA [Pantoea ananatis
           AJ13355]
          Length = 439

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 21/185 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   +A       D +L+L+CG GNF+L + +     + VE     V+
Sbjct: 269 FIQVNDTVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGKSVQSAVGVEGVAALVQ 328

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
            A YN   N + NVK  + + +E               D+    +    F  + +DP R+
Sbjct: 329 QAEYNADVNALKNVKFFQHNLEE---------------DVSRQPWAMQGFNKVLLDPARA 373

Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
           G       +V+  P  ++Y+SCNP +L RD  ++LS  + +ER+A+ D FP+TRH+E  V
Sbjct: 374 GAAGVMAHVVKLSPECVVYVSCNPVTLARDSETLLSAGYQLERVAMLDMFPHTRHLESMV 433

Query: 361 LLVRK 365
           L  +K
Sbjct: 434 LFRKK 438


>gi|218555336|ref|YP_002388249.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli IAI1]
 gi|218696384|ref|YP_002404051.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 55989]
 gi|300815798|ref|ZP_07096022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           107-1]
 gi|218353116|emb|CAU98943.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli 55989]
 gi|218362104|emb|CAQ99713.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli IAI1]
 gi|300531727|gb|EFK52789.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           107-1]
 gi|323946492|gb|EGB42518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H120]
 gi|324016362|gb|EGB85581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           117-3]
          Length = 433

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA+    V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|218782690|ref|YP_002434008.1| RNA methyltransferase, TrmA family [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764074|gb|ACL06540.1| RNA methyltransferase, TrmA family [Desulfatibacillum alkenivorans
           AK-01]
          Length = 463

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 25/212 (11%)

Query: 159 KICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLE 215
           +ICL  +DY+ + +        Y+   NSF Q N     N++      A  KG +  +L+
Sbjct: 272 EICLKGQDYIMDSIG----PWEYKVSANSFFQTNTRQAKNLYQTMEDYADLKGGE-RVLD 326

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G   + L+     VL +EI + +V  AR N   N VNN   +             
Sbjct: 327 LYSGAGAIPIWLSPKAGEVLGIEIVEVAVADARDNCERNKVNNCTFLVG----------- 375

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLS 333
               + L+ +D  +++   + +DPPRSG+    V   M  A   ++YISCNP +L RDL 
Sbjct: 376 ----DILETLDEVAHKPDVLVIDPPRSGMHGKVVKKVMAMAPSKMVYISCNPTTLARDLE 431

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +LS T+++E +   D FP+T H+E    LV+K
Sbjct: 432 LLSETYSVEEVQPIDMFPHTHHIEAVARLVKK 463


>gi|197336274|ref|YP_002156880.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11]
 gi|226725398|sp|B5FAG4|RUMA_VIBFM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|197317764|gb|ACH67211.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11]
          Length = 438

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 159/362 (43%), Gaps = 26/362 (7%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Q+E+Q+  K ++L+++M    V     +Q    E + YR RA   +  +      + F  
Sbjct: 97  QHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLMIN-KQTNQLDFGF 155

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + K+   I       +L+  L   + +   L   L+ K         Q+D   V LI H 
Sbjct: 156 RKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKNLGHVELVQADNGSVLLIRH- 214

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            + D   +    L +    R   + L+  A+     L+    +E   +   T IY   ++
Sbjct: 215 -VADFNEKDHQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTKIYFTPKD 269

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q N  +N  M+E  L+     + D +L+L+CG GNFSL LA+    V+ +E     V
Sbjct: 270 -FIQVNRKVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGIEGVDDMV 328

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N   NH++NV         F QA   E   +++      S +F  I +DP R+G 
Sbjct: 329 QRAKLNAERNHLSNV--------SFYQANLEEEASDQV----WASTKFTKILLDPARAGA 376

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
                 + +  P  ++Y+SCNP +L RD  +L      + RL + D FP+T H+E   L 
Sbjct: 377 AGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGHLESMALF 436

Query: 363 VR 364
            R
Sbjct: 437 ER 438


>gi|291618632|ref|YP_003521374.1| RumA [Pantoea ananatis LMG 20103]
 gi|291153662|gb|ADD78246.1| RumA [Pantoea ananatis LMG 20103]
          Length = 467

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 24/191 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   +A       D +L+L+CG GNF+L + +     + VE     V+
Sbjct: 269 FIQVNDTVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGKSVQSAVGVEGVAALVQ 328

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
            A YN   N + NVK  + + +E               D+    +    F  + +DP R+
Sbjct: 329 QAEYNADVNALKNVKFFQHNLEE---------------DVSRQPWAMQGFNKVLLDPARA 373

Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
           G       +V+  P  ++Y+SCNP +L RD  ++LS  + +ER+A+ D FP+TRH+E  V
Sbjct: 374 GAAGVMAHVVKLSPECVVYVSCNPVTLARDSETLLSAGYQLERVAMLDMFPHTRHLESMV 433

Query: 361 LLVRK---PSG 368
           L  +K   P+G
Sbjct: 434 LFRKKYKCPAG 444


>gi|332289405|ref|YP_004420257.1| 23S rRNA 5-methyluridine methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330432301|gb|AEC17360.1| 23S rRNA 5-methyluridine methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 435

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 88/182 (48%), Gaps = 17/182 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  IN  M++  L        D +L+L+CG GNF+L LA+   RV+ +E     VE
Sbjct: 267 FIQVNRQINEKMVQTALNWLDPQADDQILDLFCGMGNFTLPLAQQSKRVVGIEGVAQMVE 326

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            ARYN   N + N    +   S  F   +  + +FN+             I +DPPRSG 
Sbjct: 327 KARYNAQQNGITNALFHQADLSVPFANQIWAQEKFNK-------------ILLDPPRSGA 373

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
                 +++     ILY+SCNP +L RD  IL    + +E+ A+ D FP T H+E   L 
Sbjct: 374 AFVLNHLIELQAEKILYVSCNPATLVRDAKILVENGYHLEKSAMIDMFPQTGHLESITLF 433

Query: 363 VR 364
            +
Sbjct: 434 SK 435


>gi|145342758|ref|XP_001416256.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576481|gb|ABO94549.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 234

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 108/212 (50%), Gaps = 25/212 (11%)

Query: 154 RANKTKICLDRDYVDE--RLTVAGRTLIYRQIENSFTQPNAGI---NVHMLEWVLAATKG 208
           R    K+ + RDYV E  RL V GR+++++ +E SF+ PN G+     + L  + A   G
Sbjct: 21  RKKTPKLVVGRDYVTETTRL-VDGRSVVFKHVEGSFSNPNGGVAELTANHLVRICADIAG 79

Query: 209 IQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +   +ELY G GN +  +A  F     AVEI    VEAAR N A N V   +IV   ++
Sbjct: 80  PKTKFIELYAGCGNHTCCMAPQFPGGAFAVEIDPVLVEAARENFARNGV-RAEIVCERAE 138

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPD 326
           ++  +  RE   N   D D+       + VDPPR GLD  T+ +V + +  ++Y++C+ +
Sbjct: 139 DWIAS--RESPTN---DRDV------VLLVDPPRGGLDARTLDVVTREFDDVIYVACDCE 187

Query: 327 SLCRDL-----SILSTTHTIERLALFDQFPYT 353
           SL RD+        +    +  LA FD  P +
Sbjct: 188 SLKRDIDDERVGFAARGFELTSLACFDHAPTS 219


>gi|170757395|ref|YP_001782496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B1 str. Okra]
 gi|169122607|gb|ACA46443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B1 str. Okra]
          Length = 458

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 112/241 (46%), Gaps = 31/241 (12%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           EC   ++  LH     +  + + +K +I   RDY+ E L      L ++    +F Q N+
Sbjct: 239 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 294

Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  E + +  K   GD     + +LYCG G    ++A    +V+ VE+ + +V+AA
Sbjct: 295 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 350

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N +NN + +     +  + ++++ +                I +DPPR G+   
Sbjct: 351 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 395

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  V  +    I+Y+SCNP +L  DL  ++   + +E++   D FP+T H+E  VLL R
Sbjct: 396 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVETCVLLQR 455

Query: 365 K 365
           K
Sbjct: 456 K 456


>gi|240103955|ref|YP_002960264.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
 gi|239911509|gb|ACS34400.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
          Length = 421

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 91/184 (49%), Gaps = 24/184 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N+   V +L  V    +G  G +L+LY G G F + LAR    V  +EI   +V
Sbjct: 256 NSFFQTNSYGAVELLREVAKRAEG--GRVLDLYSGVGTFGVYLARKGFSVEGIEINPFAV 313

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-FKTIFVDPPRSG 303
           E A  N   N V                   E  F    D D+ S + + T+ VDPPR+G
Sbjct: 314 EMANRNAEINGV-------------------EARFRVGADKDVGSLQAYDTVIVDPPRAG 354

Query: 304 LDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L    V  +VQ  P  ++Y+SCNP +L RDL+ L + +T+  +   D FP+T H+E  V 
Sbjct: 355 LHPKLVKRLVQKGPEKLIYVSCNPKTLARDLNELKSVYTVGGIIGLDMFPHTPHVEVVVE 414

Query: 362 LVRK 365
           L R+
Sbjct: 415 LRRQ 418


>gi|304316338|ref|YP_003851483.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777840|gb|ADL68399.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 450

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 120/250 (48%), Gaps = 46/250 (18%)

Query: 137 RLRDALHARKYQIQLIG-------------RANKTKICLDRDYV-DERLTVAGRTLIYRQ 182
           +L D L + K   +LIG             +  K  +   RDY+ DE L +  +   +  
Sbjct: 224 KLVDELRSIKLNGKLIGILHTVNDSYSDAVKCEKLTVLYGRDYIMDEILGLKFKISAF-- 281

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAV 237
              SF Q N+       E + +  +   G+     L +LYCG G   +++A    +V+ V
Sbjct: 282 ---SFFQTNS----KGAEKLYSIAREFAGEISNKILFDLYCGTGTIGIIMAPLAKKVIGV 334

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+ + +V+AAR N   N ++N++ +           ++ +E N   D+         + +
Sbjct: 335 ELVEEAVDAARENARLNGLSNIQFIA------GDVAQKIKEINEKPDV---------VVL 379

Query: 298 DPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354
           DPPR G++  A + +++  P  I+Y+SCNP SL RDL + +   + +E++   D FP+T 
Sbjct: 380 DPPRPGVNPKAILDIIKLNPEKIIYVSCNPVSLTRDLKMFNERQYKVEKVKCVDMFPHTP 439

Query: 355 HMECGVLLVR 364
           H+EC  L+ R
Sbjct: 440 HVECVTLMSR 449


>gi|290511109|ref|ZP_06550478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55]
 gi|289776102|gb|EFD84101.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55]
          Length = 434

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 31/190 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q N G+N  M    LEW+      +Q +  +L+L+CG GNF+L LA     V+ VE  
Sbjct: 263 FIQVNDGVNQQMVRTALEWL-----DLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  R N A N ++NV     + +E               D+   ++    F  + +
Sbjct: 318 PALVEKGRENAALNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  ++Y+SCNP +L RD  ++L   + I+RLA+ D FP+T H
Sbjct: 363 DPARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGH 422

Query: 356 MECGVLLVRK 365
           +E  VL  R+
Sbjct: 423 LESMVLFERR 432


>gi|206576756|ref|YP_002236864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           342]
 gi|226725382|sp|B5XV15|RUMA_KLEP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|206565814|gb|ACI07590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           342]
          Length = 434

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 31/190 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q N G+N  M    LEW+      +Q +  +L+L+CG GNF+L LA     V+ VE  
Sbjct: 263 FIQVNDGVNQQMVRTALEWL-----DLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  R N A N ++NV     + +E               D+   ++    F  + +
Sbjct: 318 PALVEKGRENAALNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  ++Y+SCNP +L RD  ++L   + I+RLA+ D FP+T H
Sbjct: 363 DPARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGH 422

Query: 356 MECGVLLVRK 365
           +E  VL  R+
Sbjct: 423 LESMVLFERR 432


>gi|323464007|gb|ADX76160.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius
           ED99]
          Length = 454

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G  SL +A H   V  VE+   ++E A+ N   N +NN   V  ++++    
Sbjct: 311 VLDAYCGIGTISLFMAPHAQHVYGVEVVPEAIEDAKRNARYNQLNNTTFVAGAAEDVILK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
            +++              +   + VDPPR G D   +  + A     I+Y+SCNP +  R
Sbjct: 371 WQQD------------GIQPDVVTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +LST + ++ +   D FP+T H+E   LLVRK
Sbjct: 419 DIEMLSTQYELKEMTPVDMFPHTTHVETVALLVRK 453


>gi|328474127|gb|EGF44932.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 439

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 164/381 (43%), Gaps = 66/381 (17%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y+QQL  K   LRQ+M  F   ++ +      E + YR RA   ++ D      + F  +
Sbjct: 98  YDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156

Query: 67  TKERMRIDYFMPGSLL---INALMIEMMATIRL--EPLLRAKLFQIDYLTSQSDQAIVTL 121
            K+  +I       +L   +N L+ E+ + +    +P    +L  ++ +   +   I   
Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEVYSVLTAFKKP---EQLGHVELVLGDNGPCITLR 213

Query: 122 IYHRLLDD---AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
               L DD   A  E A R + +L+       L+   ++  +            VAG   
Sbjct: 214 HLSNLADDEVSALVELATRHQASLY-------LMPETDQLNL------------VAGEVP 254

Query: 179 IYRQI-------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
            Y++         N+F Q N  +N  M+E  +      Q D  +L+L+CG GNFSL +A+
Sbjct: 255 FYQEAGVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDP-QSDERVLDLFCGLGNFSLPIAK 313

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     VE A  N + N +NN         +F  A       N  +D D  +
Sbjct: 314 RAKHVVGVEGVAEMVEKASNNASLNQINNA--------QFYHA-------NLEQDFDGQA 358

Query: 290 Y---RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL-SILSTTHTIER 343
           +   +F  + +DP R+G     +  V A     ++Y+SCNP +L RD  S+L   + + +
Sbjct: 359 WAAEKFDKVLLDPARAGA-SGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTK 417

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           L + D FP+T H+E   L  +
Sbjct: 418 LGMLDMFPHTSHLESMALFEK 438


>gi|68248938|ref|YP_248050.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|81336651|sp|Q4QNK7|RUMA_HAEI8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|68057137|gb|AAX87390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           86-028NP]
          Length = 438

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNSALNERMINTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N A N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|95929630|ref|ZP_01312372.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
           684]
 gi|95134327|gb|EAT15984.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
           684]
          Length = 424

 Score = 90.1 bits (222), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 157/372 (42%), Gaps = 45/372 (12%)

Query: 10  YEQQLAEK----VD------RLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           YEQQ   K    VD      R+ Q ++   VP  Q F      YR R +F  ++      
Sbjct: 82  YEQQCRWKQQIFVDSCVRHGRIDQGVIRDLVPAPQEF-----GYRSRVQFKCYNSPQGFI 136

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
              + + +   + + +    +L I A M     T+    +  + + QID     SD A+ 
Sbjct: 137 LGFYRRGSHNVIDVRHCPVIALPIAAQMTAWR-TLFDGSVYASGVSQIDVAVG-SDDALR 194

Query: 120 TLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           T++++R  +     AW      L   L A    + L+    K    L +  VD  + V  
Sbjct: 195 TIVHYRGAETEAFCAW------LAGCLDAVDGAV-LVQTGRKNPQILLQGQVDLAIRVDE 247

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             +        F Q +   N  ++  V+ AA    Q  +L+LYCG GNFSL LAR    V
Sbjct: 248 PPMELHYGPGGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLYCGMGNFSLPLARRAGAV 307

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE   PS+  A  N     + N      S + F    RR  +                
Sbjct: 308 VGVEDYAPSISYADRNRDTLGLTNATFHACSVETFLGRWRRTAD---------------V 352

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
           I +DPPRSG  +A  GM++  P  I+Y+SC+  +L RDL+ L+ ++T+  +   D FP T
Sbjct: 353 IVLDPPRSGAREAVAGMMRCRPRRIVYVSCDQQTLMRDLTALAQSYTVTSIQALDMFPQT 412

Query: 354 RHMECGVLLVRK 365
            H E   +L R+
Sbjct: 413 CHTEVLAVLDRQ 424


>gi|315653825|ref|ZP_07906741.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC
           55195]
 gi|315488521|gb|EFU78167.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC
           55195]
          Length = 447

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
              E              +   IFVDPPR GL D  +   V   P  I+YISCNP ++ R
Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL I  +  +  + +   D FP T H+EC VL+ RK
Sbjct: 412 DLQIFQAAGYDFDCIDPVDMFPQTPHVECVVLMSRK 447


>gi|160915380|ref|ZP_02077592.1| hypothetical protein EUBDOL_01388 [Eubacterium dolichum DSM 3991]
 gi|158432771|gb|EDP11060.1| hypothetical protein EUBDOL_01388 [Eubacterium dolichum DSM 3991]
          Length = 542

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 15/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF Q N      + + + +  KG +  ++E Y G G  SL L    D ++ +E  K +V 
Sbjct: 269 SFFQLNTAQAKVLYQTIASLVKGHKKRIVEAYSGIGAISLYLRDKADEIIGIETIKDAVV 328

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   NH  +V+ +         A  +    ++ K+ID+       + VDPPRSGLD
Sbjct: 329 NANQNAKRNHCEHVRFL------CDDAASKLTYLSKNKEIDV-------LVVDPPRSGLD 375

Query: 306 DATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DA +  +       I+Y+SCNP +L ++L++L   + ++R+   D FP T+H+E  VLL 
Sbjct: 376 DAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEKYRVQRVIPIDMFPNTQHVETVVLLS 435

Query: 364 RKPS 367
            K +
Sbjct: 436 HKKA 439


>gi|296104454|ref|YP_003614600.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058913|gb|ADF63651.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 432

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 17/180 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N G+N  M+E  L        D +L+L+CG GNF+L LAR    V+ VE     V 
Sbjct: 263 FIQVNDGVNQQMIETALTWLDVQPTDRVLDLFCGMGNFTLPLARKAASVVGVEGVDALVA 322

Query: 246 AARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             + N   N + NV     + +E  TQ    ++ F++             I +DP R+G 
Sbjct: 323 KGQENAQQNGLQNVTFFHQNLEEDVTQQPWAKQGFDK-------------ILLDPARAGA 369

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362
                 +++  P  ++Y+SCNP +L RD  ++LS  + I+RLA+ D FP+T H+E  VL 
Sbjct: 370 PGVMQHIIKLAPKRVVYVSCNPATLARDSEALLSAGYQIQRLAMLDMFPHTGHLESMVLF 429


>gi|195953997|ref|YP_002122287.1| RNA methyltransferase, TrmA family [Hydrogenobaculum sp. Y04AAS1]
 gi|195933609|gb|ACG58309.1| RNA methyltransferase, TrmA family [Hydrogenobaculum sp. Y04AAS1]
          Length = 415

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 163/376 (43%), Gaps = 67/376 (17%)

Query: 10  YEQQLAEKVDRLRQMMLAF---QVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y +QL +K + L++ +      ++ NL  I   EP HYR R +F + +       + F  
Sbjct: 81  YTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRNRVKFKVRNK-----ELGFVG 135

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
             ++ +++++    S  IN LM          P L+             + + +++ Y  
Sbjct: 136 VDEDFVKVEHCPISSKAINDLM----------PFLKE-------FAKHFNPSWISVFY-- 176

Query: 126 LLDDAWRECAIRLR-----DALHARKYQIQLIGRANKTKICLDRDYVDER-----LTVAG 175
              D  +E  ++       D    +K++  L  + N   I L +D  D+R     L++  
Sbjct: 177 --SDTQKEYMVKFASYDYIDKEKLKKFKEHLTPK-NVVGITLVKD--DKREDKIILSIGT 231

Query: 176 R-TLI------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
             T I      YR   NSF Q N  +   +L+ +L         +L+ Y G G F L LA
Sbjct: 232 PFTFIELLKIKYRISVNSFFQVNIKVAQKLLQTLLEKENYFD-RVLDDYGGVGLFGLHLA 290

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R    V   +I K S+  A Y+   N++NNV     +S  F +           K +  H
Sbjct: 291 RRSGSVDIADINKSSINDAEYSAKINNINNVSFYVQNSYVFLK-----------KSLYKH 339

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ-AYP-HILYISCNPDSLCRDLSILSTTHTIERLAL 346
           +     + +DPPRSGL    +G++    P +I YISC P SL RDL +L   + I+ + +
Sbjct: 340 A---NLLVLDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLKLLGKKYQIKEIYM 396

Query: 347 FDQFPYTRHMECGVLL 362
            D FP T H+E  V L
Sbjct: 397 ADMFPQTYHIETAVKL 412


>gi|283835447|ref|ZP_06355188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae
           ATCC 29220]
 gi|291068628|gb|EFE06737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae
           ATCC 29220]
          Length = 432

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 15/181 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N G+N  M+   L       GD +L+L+CG GNF+L LAR    V+ VE     VE
Sbjct: 263 FIQVNEGVNQQMVARALEWLDVQPGDRVLDLFCGMGNFTLPLARRAASVVGVEGVPALVE 322

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N   N ++NV     + +E     R+    N           F  + +DP R+G  
Sbjct: 323 KARENALNNGLHNVTFFHENLEE--DVTRQPWAKN----------GFDKVLLDPARAGAA 370

Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
                +++  P  ++Y+SCNP +L RD  ++L+  + I +LA+ D FP+T H+E  VL  
Sbjct: 371 GVMQHIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRQLAMLDMFPHTGHLESMVLFE 430

Query: 364 R 364
           R
Sbjct: 431 R 431


>gi|254245217|ref|ZP_04938539.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192]
 gi|126198595|gb|EAZ62658.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192]
          Length = 450

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 92/193 (47%), Gaps = 25/193 (12%)

Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           TL YR     F Q NA +N  M    L+W LA T   +  +L+L+CG GNFSL LAR   
Sbjct: 273 TLAYR--PGDFVQVNAPVNESMIRQALDW-LAPTADER--VLDLFCGLGNFSLPLARRVA 327

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291
           RV+ VE     VE A  N  AN + N    +   SK   +A+  E+ F            
Sbjct: 328 RVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEALWAEQGFT----------- 376

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
              + +DPPR G  +A   M       ++Y+SCNP +L RD   ++   + ++R  + D 
Sbjct: 377 --AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434

Query: 350 FPYTRHMECGVLL 362
           FP T H+E   L 
Sbjct: 435 FPQTAHVEAMALF 447


>gi|260913270|ref|ZP_05919752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pasteurella dagmatis
           ATCC 43325]
 gi|260632857|gb|EEX51026.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pasteurella dagmatis
           ATCC 43325]
          Length = 436

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 90/178 (50%), Gaps = 23/178 (12%)

Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q NA +N+ M    L+W+ L +T  +    L+L+CG GNF+L L+R    V+ +E  +
Sbjct: 267 FIQVNADLNLKMIATALDWLELNSTDNV----LDLFCGMGNFTLPLSRKVKSVIGIEGVQ 322

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             V+ A+ N   N   NV+  + +  +            R  D       F  I +DPPR
Sbjct: 323 EMVQKAQKNAEQNQCANVQFYQTNLDQ------------RFSDQAWAKLPFDKILLDPPR 370

Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           +G   A   + +     ILY+SCNP +L RD  IL+   + + ++A+ D FP+T H+E
Sbjct: 371 TGAAFALNALCELGAQKILYVSCNPATLIRDTEILADFGYRLSKVAMIDMFPHTGHLE 428


>gi|148380817|ref|YP_001255358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 3502]
 gi|148290301|emb|CAL84425.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC
           3502]
          Length = 456

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 112/241 (46%), Gaps = 31/241 (12%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           EC   ++  LH     +  + + +K +I   RDY+ E L      L ++    +F Q N+
Sbjct: 239 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 294

Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  E + +  K   GD     + +LYCG G    ++A    +V+ VE+ + +V+AA
Sbjct: 295 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 350

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N +NN + +     +  + ++++ +                I +DPPR G+   
Sbjct: 351 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 395

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  V  +    I+Y+SCNP +L  DL  ++   + +E++   D FP+T H+EC V + +
Sbjct: 396 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVECVVKIEK 455

Query: 365 K 365
           K
Sbjct: 456 K 456


>gi|301169038|emb|CBW28635.1| 23S rRNA (uracil-5)-methyltransferase [Haemophilus influenzae
           10810]
          Length = 438

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNSALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N A N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILRDFGYKIEKSAVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|282858081|ref|ZP_06267276.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pyramidobacter
           piscolens W5455]
 gi|282584003|gb|EFB89376.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pyramidobacter
           piscolens W5455]
          Length = 541

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 21/185 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SF Q N G    +  +  +  +G   +LLELYCG G  +  L+R    + AVE+   +V
Sbjct: 278 TSFFQANPGQAEQLFAYAASLAEG--QNLLELYCGVGALTAFLSRKAKTIRAVEVWASAV 335

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             AR N  +N +  + +++ +++              L+ ID        + VDPPR+G 
Sbjct: 336 ALARENGESNRIEGLTVLQGAAENVVAPA-------DLEGID-------CVVVDPPRAGC 381

Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI---ERLALFDQFPYTRHMECG 359
           D + +  + A   P +LYISCNP +L RD ++L     +   + L +FD FP T H+E  
Sbjct: 382 DKSLIETIAASRVPRVLYISCNPATLARDAALLRDAGYVLDMDSLKVFDMFPQTCHVETV 441

Query: 360 VLLVR 364
            LL +
Sbjct: 442 CLLSK 446


>gi|104780552|ref|YP_607050.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas entomophila
           L48]
 gi|143581542|sp|Q1IDL9|RUMA_PSEE4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|95109539|emb|CAK14240.1| 23S rRNA m5U1939 methyltransferase RumA [Pseudomonas entomophila
           L48]
          Length = 452

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 17/191 (8%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDR 233
           G  L +R     F Q NA +N  M++  LA         +L+L+CG GNF+L LAR    
Sbjct: 273 GMELAWR--PGDFVQVNAQVNTLMIQQALAWLAPQAHERVLDLFCGLGNFALPLARQARE 330

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+AVE  +  VE A  N    H NNV   R    + +Q          L   +  +  F 
Sbjct: 331 VVAVEGVQAMVERAEANA---HGNNVYNARFFQADLSQP---------LAGAEWVAEGFS 378

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
            + +DPPR G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP
Sbjct: 379 AVLLDPPRDGAYEVVQGIARLGAKRLVYVSCNPATLARDTQVLVGQGYRLKRAGILDMFP 438

Query: 352 YTRHMECGVLL 362
            T H+E   L 
Sbjct: 439 QTAHVEAMALF 449


>gi|229829394|ref|ZP_04455463.1| hypothetical protein GCWU000342_01484 [Shuttleworthia satelles DSM
           14600]
 gi|229791825|gb|EEP27939.1| hypothetical protein GCWU000342_01484 [Shuttleworthia satelles DSM
           14600]
          Length = 468

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 10/187 (5%)

Query: 186 SFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N      + E  L  A  KG Q  + +LYCG G  SL LAR   +V  VEI   +
Sbjct: 287 SFYQVNPYQTARLYEKALEYADLKG-QESVWDLYCGIGTISLFLARKAGQVYGVEIIPEA 345

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N + N       ++E        R      D  +H      I VDPPR G
Sbjct: 346 IEDAKANARRNGIENAHFFVGKAEEILPDFYEGRRDAVAGDA-LHP---DVIVVDPPRKG 401

Query: 304 LDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGV 360
            DD  +  M++  P  I+Y+SC+P +L RDL  L+   ++++R+   DQFP T H+EC  
Sbjct: 402 CDDICLQTMLRMRPDRIVYVSCDPATLARDLKTLAEGGYSLQRVCPVDQFPQTTHVECIA 461

Query: 361 LLVRKPS 367
           L+ R  S
Sbjct: 462 LIQRVKS 468


>gi|160893502|ref|ZP_02074287.1| hypothetical protein CLOL250_01053 [Clostridium sp. L2-50]
 gi|156864897|gb|EDO58328.1| hypothetical protein CLOL250_01053 [Clostridium sp. L2-50]
          Length = 483

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 171/388 (44%), Gaps = 51/388 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAF-QVPNLQIFR------SEPIHYRMRAEFHIWHDGDDLYHI 61
            YE+QL  K +++R+ +    ++ N            EP HYR +A+F +  D +    I
Sbjct: 114 SYEKQLEYKWNKVRECLRRIGKIENPDTLMEPIYGMKEPYHYRNKAQFPVGRDKNGNIVI 173

Query: 62  MF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL--FQIDYLTSQSDQAI 118
            F   +T   +  D    G+ + + ++          P++RA L  + I      + Q +
Sbjct: 174 GFYAGRTHSIIDSDTCAIGAEVNDQIL----------PIIRAFLTEYNISTYNETTGQGL 223

Query: 119 VTLIYHRL---LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
           V  I  R+     +      +  +   HA +   +L   +  T ICL+   +  ++ L  
Sbjct: 224 VRHILTRVGFTTGEVMVCLIVNGKKLPHADELISRLTKISGMTSICLNINTEKTNKILGP 283

Query: 174 AGRTL-------------IYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
             +TL              YR    SF Q N      + E  L  A    +  + ++YCG
Sbjct: 284 TCKTLWGSPYITDYIGNVKYRISPLSFYQVNPVQTKVLYEKALEYADLNGEETVWDMYCG 343

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  VEI   ++  AR N   N ++NV+     ++E   A+  +   
Sbjct: 344 IGTISLFLAQKAKQVYGVEIVPQAILDARKNAELNDIHNVEFFTGKAEEVVPAIYEKGGD 403

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS- 336
               D+         + VDPPR G D   +  +++  P  ++Y+SC+P +L RD++IL+ 
Sbjct: 404 GSHADV---------VVVDPPRKGCDKVLLDTLIRMNPKRLVYVSCDPATLARDIAILTP 454

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + +E++A+ DQF +T H+E  VLL R
Sbjct: 455 AGYHLEKVAVVDQFGHTGHVESVVLLSR 482


>gi|257451727|ref|ZP_05617026.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|317058286|ref|ZP_07922771.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313683962|gb|EFS20797.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 453

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 167/385 (43%), Gaps = 44/385 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRA-EFHIWHDGDDLYHIM 62
           +YE QL  K   ++++M      N       I   E  HYR +  E    H G  +    
Sbjct: 87  KYEAQLQYKTAMVKEVMERIGKLNSNLVLDCIASPEEKHYRNKVIEPFSKHKGKIITG-F 145

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSD 115
           F +++ E   ++  M  S L N ++         E L        +  L  I   T+ S 
Sbjct: 146 FQRRSHEVFEVEENMLNSKLGNKIIETFKQYANQEKLSVYDEKKHQGLLRNIMIRTNSSQ 205

Query: 116 QAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           +A++ LI + + ++++ ++  +++   +   K  I L     KT + L     D+ + + 
Sbjct: 206 EAMLVLIVNAKKIEESLKKILLQMPKNIPELK-SIYLSLNTRKTNVVLG----DKNICIW 260

Query: 175 GRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
           G   +  ++         +SF Q N     H+ E  L+    I+  ++++ Y G G   +
Sbjct: 261 GEKTLKEELFGIHFHISPSSFFQINVPQTKHLYEKALSLIPKIENKNVVDAYSGTGTIGM 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           +L+R   +V A+EI + +          NH++N++ +             E E +RL + 
Sbjct: 321 LLSRKAKKVYAIEIVESASRDGAKTAKENHIDNIEFI---------CGPVEVELDRLLE- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT-HTIE 342
                    I  DPPR G++++ +  V     P ++YISCNP +L RDL I++   + + 
Sbjct: 371 --EGKNLDAIVFDPPRKGIEESILRKVAEVGIPEMVYISCNPSTLARDLKIMAECGYQVG 428

Query: 343 RLALFDQFPYTRHMECGVLLVRKPS 367
            +  FD FP T H+EC  L+ R  S
Sbjct: 429 EIQPFDMFPQTSHVECIALIQRVKS 453


>gi|237809371|ref|YP_002893811.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187]
 gi|237501632|gb|ACQ94225.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187]
          Length = 447

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 106/216 (49%), Gaps = 22/216 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
            ++ ++C   + +++ L      L +    +SF Q N      +    L   + ++GD  
Sbjct: 249 GSQQRVCYGAEAIEDEL----HGLTFSISAHSFYQVNPQQTDQLYATALQFAE-LKGDET 303

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++YCG G  SL LA+   +V+ +E+   ++E AR N   N ++N +     ++E   A
Sbjct: 304 VVDIYCGIGTISLYLAQEASKVIGIEVVSQAIEDARSNAKRNQLDNTEFYVGKAEEVVPA 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           +  +              R   + VDPPR G + A +  + A     I+Y+SC+PDSL R
Sbjct: 364 LYAQ------------GLRADVVVVDPPRKGCELAVLNTMAAMTPERIVYVSCDPDSLAR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL++L    + I ++   D FP++ H+E  V L+R 
Sbjct: 412 DLAVLQQAGYAITKVQPVDMFPHSMHVETVVQLIRS 447


>gi|323978604|gb|EGB73686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TW10509]
          Length = 433

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 31/189 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q NAG+N  M    LEW+      +Q +  +L+L+CG GNF+L LA     V+ VE  
Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  + N   N ++NV     + +E               D+    +    F  + +
Sbjct: 318 PALVEKGQQNARLNSLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H
Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422

Query: 356 MECGVLLVR 364
           +E  VL  R
Sbjct: 423 LESMVLFSR 431


>gi|331654268|ref|ZP_08355268.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M718]
 gi|331047650|gb|EGI19727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M718]
          Length = 433

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 31/189 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q NAG+N  M    LEW+      +Q +  +L+L+CG GNF+L LA     V+ VE  
Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  + N   N + NV     + +E               D+    +    F  + +
Sbjct: 318 SALVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H
Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422

Query: 356 MECGVLLVR 364
           +E  VL  R
Sbjct: 423 LESMVLFSR 431


>gi|157148321|ref|YP_001455640.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|226725378|sp|A8ANZ1|RUMA_CITK8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|157085526|gb|ABV15204.1| hypothetical protein CKO_04138 [Citrobacter koseri ATCC BAA-895]
          Length = 432

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 25/186 (13%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q N G+N  M    LEW+      IQ D  +L+L+CG GNF+L LA     V+ VE  
Sbjct: 263 FIQVNEGVNQKMVARALEWL-----DIQPDDRVLDLFCGMGNFTLPLATRAASVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              VE  R N   N + NV     + +E     +  +              F  I +DP 
Sbjct: 318 PALVEKGRENARRNGLQNVTFFHENLEEDVTKQQWAKN------------GFDKILLDPA 365

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMEC 358
           R+G       +++  P  I+Y+SCNP +L RD  ++L+  + I+RLA+ D FP+T H+E 
Sbjct: 366 RAGAAGVMKHIIKLKPIRIVYVSCNPATLARDSDALLNAGYQIQRLAMLDMFPHTGHLES 425

Query: 359 GVLLVR 364
            VL  R
Sbjct: 426 MVLFER 431


>gi|152971649|ref|YP_001336758.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896246|ref|YP_002920982.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|226725383|sp|A6TD57|RUMA_KLEP7 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|150956498|gb|ABR78528.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548564|dbj|BAH64915.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 434

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 27/188 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N G+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNDGVNQQMVRTALEWLDLRP---EDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N A N ++NV     + +E               D+   ++    F  + +DP
Sbjct: 320 LVEKGRENAARNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  ++Y+SCNP +L RD  ++L   + I+RLA+ D FP+T H+E
Sbjct: 365 ARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLE 424

Query: 358 CGVLLVRK 365
             VL  R+
Sbjct: 425 SMVLFERR 432


>gi|225026873|ref|ZP_03716065.1| hypothetical protein EUBHAL_01127 [Eubacterium hallii DSM 3353]
 gi|224955797|gb|EEG37006.1| hypothetical protein EUBHAL_01127 [Eubacterium hallii DSM 3353]
          Length = 471

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 84/153 (54%), Gaps = 14/153 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI K +++ AR N A NH++NV+     ++E   A  
Sbjct: 327 DLYCGIGTISLFLAQKAKQVYGVEIIKEAIDDARRNAALNHMDNVEFFVGKAEEVVPA-- 384

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDL 332
                 + +   IH      I VDPPR G D   +  M+   P  I+Y+SC+P +L RDL
Sbjct: 385 ------QYEKTGIHP---DVIVVDPPRKGCDAILLNTMLDMAPKRIVYVSCDPATLARDL 435

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            IL    +T+E++++ DQF ++ H+E    L R
Sbjct: 436 KILCEEKYTLEKVSVVDQFSHSVHVESVCALKR 468


>gi|332798852|ref|YP_004460351.1| TrmA family RNA methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332696587|gb|AEE91044.1| RNA methyltransferase, TrmA family [Tepidanaerobacter sp. Re1]
          Length = 460

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 26/208 (12%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217
           ++ +T+ G   IY  I +        SF Q N  I   +L   +    GI  D  +L+LY
Sbjct: 260 EKNITLYGSPYIYDYIGDIKFRLSPLSFFQVNP-IQAEVLYNKVLEYAGITQDEIVLDLY 318

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L LA+   +   +E+   +V  AR N   N +NN + +  +++     M  E 
Sbjct: 319 CGTGTITLFLAQKAKKAYGIELVSQAVADARLNAKINGINNAEFIEGAAEAVLPKMAEE- 377

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                        +   I VDPPR G D+ T+  +   +   I+Y+SCNP +L RDL  L
Sbjct: 378 -----------GIKPDIIVVDPPRRGCDEKTLKTITKISPKKIIYVSCNPATLARDLRYL 426

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLL 362
               +  ++    D FP T H+EC VL+
Sbjct: 427 EDKGYKTQKAQPVDMFPQTSHVECVVLM 454


>gi|90415716|ref|ZP_01223650.1| RNA methyltransferase, TrmA family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90333039|gb|EAS48209.1| RNA methyltransferase, TrmA family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 439

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 20/205 (9%)

Query: 165 DYVDERLTVAGRTLIYRQIE-NSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCG 219
           D  D+ L V     I  Q+E   F Q N+ IN  M++ VL   +    +     ++L+CG
Sbjct: 246 DGGDQALHVVLNDRIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERASVAVDLFCG 305

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           +GNFSL LA  FDRV+ +E     V  A+ N   N+V+N + V      +T  MR+ +  
Sbjct: 306 SGNFSLPLAAQFDRVIGIEGLSELVGKAQENAQRNNVSNAEFVVSDLSNWT-GMRKIK-- 362

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-ST 337
                      +   + +DPPRSG       +V+     ++YISC+P ++ RDL +L   
Sbjct: 363 ----------GKVDLVLLDPPRSGAAGVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEA 412

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            + +    + D FP+T H+E   LL
Sbjct: 413 GYKMIAAGVMDMFPHTAHVEAIALL 437


>gi|299144530|ref|ZP_07037609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517618|gb|EFI41358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 520

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 13/160 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G  SL  AR+  +V+ VEI + ++E AR N   N V+NV+ +   S+E  + 
Sbjct: 279 IFDLYCGIGTISLFAARNAKKVIGVEIVENAIEDARKNAEFNSVDNVRFICGKSEEILEK 338

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           +  E +    K           I +DPPR+GLD+  +  +++  P  I YISCN  +  R
Sbjct: 339 LLDEEKIIPNK-----------IILDPPRAGLDEKLIKKLLEIMPEKISYISCNSSTQAR 387

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           DL +L   + IE++   D F  + H+E  V L +  S  H
Sbjct: 388 DLKLLKEKYKIEKIQPVDMFCNSVHVETVVYLSKLKSDEH 427


>gi|153839832|ref|ZP_01992499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ3810]
 gi|149746649|gb|EDM57637.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ3810]
          Length = 439

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 162/380 (42%), Gaps = 64/380 (16%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y+QQL  K   LRQ+M  F   ++ +      E + YR RA   ++ D      + F  +
Sbjct: 98  YDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156

Query: 67  TKERMRIDYFMPGSLL---INALMIEMMATI----RLEPLLRAKLFQIDYLTSQSDQAIV 119
            K+  +I       +L   +N L+ E+ + +    + E L   +L   D      +   +
Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSVLTAFKKPEQLGHVELVLGD------NGPCI 210

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL +   L D      + L     A ++Q  L       ++ L          VAG    
Sbjct: 211 TLRHLSNLADEEVSALVEL-----ATRHQASLYLMPETDQLNL----------VAGEVPF 255

Query: 180 YRQI-------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARH 230
           Y++         N+F Q N  +N  M+E  +      Q D  +L+L+CG GNFSL +A+ 
Sbjct: 256 YQEAGVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDP-QSDERVLDLFCGLGNFSLPIAKR 314

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V+ VE     VE A  N + N +NN         +F  A       N  +D D  ++
Sbjct: 315 AKHVVGVEGVAEMVEKASNNASLNQINNA--------QFYHA-------NLEQDFDGQAW 359

Query: 291 ---RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL-SILSTTHTIERL 344
              +F  + +DP R+G     +  V A     ++Y+SCNP +L RD  S+L   + + +L
Sbjct: 360 AAEKFDKVLLDPARAGA-SGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKL 418

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   L  +
Sbjct: 419 GMLDMFPHTSHLESMALFEK 438


>gi|183600076|ref|ZP_02961569.1| hypothetical protein PROSTU_03609 [Providencia stuartii ATCC 25827]
 gi|188022362|gb|EDU60402.1| hypothetical protein PROSTU_03609 [Providencia stuartii ATCC 25827]
          Length = 443

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 96/207 (46%), Gaps = 33/207 (15%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           VAG  L +  +  +F Q N+ IN  M    LEW+          +L+L+CG GNF+L +A
Sbjct: 259 VAGEMLQFSPL--NFIQVNSDINQKMVAQALEWLDLHP---HDRVLDLFCGMGNFTLPIA 313

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R    V+ VE  +  V+ AR N   N + N                    +N   +  IH
Sbjct: 314 RRVKAVVGVEGVENLVKQARNNAQRNSIGNATF-----------------YNENLEAQIH 356

Query: 289 SY-----RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTI 341
           +       F  + +DP R+G       +V+  P  I+Y+SCNP +L RD  I L   + +
Sbjct: 357 TQPWAAEGFNKVLLDPARAGAAGVMEHLVKLMPEKIVYVSCNPTTLARDSKILLQAGYQL 416

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSG 368
            +L + D FP+T H+E  VL +  P G
Sbjct: 417 VQLRMLDMFPHTSHLESMVLFINSPEG 443


>gi|295108206|emb|CBL22159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus obeum
           A2-162]
          Length = 441

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 168/390 (43%), Gaps = 47/390 (12%)

Query: 2   SGTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-LY 59
            G  L+D  YE+QL +K + + +++  +      I   +P HYR +      H  D  + 
Sbjct: 71  GGCQLLDMPYEKQLKKKQNHVSKLVQPYCRTEKIIGMEDPFHYRNKVHAVFGHRKDGTVI 130

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEP--------LLRAKLFQID 108
              + Q T   + +D  +      +A++ +   ++ + +++         L R  L +  
Sbjct: 131 SGTYQQGTHFIVPVDECLIEDKRADAIICDIRGLLKSFKIKTYNEDTGYGLFRHVLIRTG 190

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----- 163
           Y    S Q +V L+    +  +       LR  LH     I L     KT + L      
Sbjct: 191 Y---HSGQVMVVLVLGSPILPSKNNFVKALR-KLHPEITTIILNVNDQKTSMVLGEKETV 246

Query: 164 ---RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
              + Y+++ L   G T  +R    SF Q N  +    L        G+ G   +++ YC
Sbjct: 247 LYGKGYIEDEL--CGHT--FRISSKSFYQVNP-VQTEKLYAKAIELAGLTGKERVIDAYC 301

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L+ +     V++VE+   +V+ A  N   N + NV+  R  +  F + M  E E
Sbjct: 302 GIGTIGLIASDKAKEVISVELNPDAVKDAIVNAKRNGIRNVRFYRNDASVFMRQMADEGE 361

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS 336
                  D+       +F+DPPRSG D+  +  +V  +P  I+Y+SC P +L RDL  L+
Sbjct: 362 -----SADV-------VFMDPPRSGSDEKFLSSVVTLHPKRIVYVSCEPTTLARDLKYLT 409

Query: 337 TTHTIERLAL-FDQFPYTRHMECGVLLVRK 365
                 R A+ FD FP T H+E  VLL RK
Sbjct: 410 RHGYRVRTAVPFDMFPATEHVETAVLLQRK 439


>gi|217077926|ref|YP_002335644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermosipho africanus
           TCF52B]
 gi|217037781|gb|ACJ76303.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermosipho africanus
           TCF52B]
          Length = 440

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 20/184 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N  +   M+E+ L     + G+  +L+L+ G G FSL LA     V+AVE +  S
Sbjct: 270 AFFQNNFQVAEKMVEF-LTKKLDLNGNEVVLDLFSGLGTFSLRLAALSKFVIAVESSHVS 328

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+A R N   N + N+K +   + ++   +                 +F  I +DPPR+G
Sbjct: 329 VKAGRANANINGLKNIKFIEADALDYLNQVNE---------------KFDVIVLDPPRTG 373

Query: 304 LD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +  +A   +++  P  I Y+SCNP +  RDL +L   + IE + +FD FP T H+E   +
Sbjct: 374 IGTEAVKKILELSPQKIGYVSCNPTTFARDLKLLLEKYEIEDIRIFDMFPQTYHIESIAI 433

Query: 362 LVRK 365
           L RK
Sbjct: 434 LNRK 437


>gi|323966763|gb|EGB62194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M863]
 gi|327251523|gb|EGE63209.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           STEC_7v]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|187731305|ref|YP_001881474.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii CDC
           3083-94]
 gi|187428297|gb|ACD07571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii CDC
           3083-94]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 31/189 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q NAG+N  M    LEW+      +Q +  +L+L+CG GNF+L LA     V+ VE  
Sbjct: 263 FIQVNAGVNQKMVASALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  + N   N + NV     + +E               D+    +    F  + +
Sbjct: 318 PALVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H
Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422

Query: 356 MECGVLLVR 364
           +E  VL  R
Sbjct: 423 LESMVLFSR 431


>gi|16130692|ref|NP_417265.1| 23S rRNA m(5)U1939 methyltransferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89109571|ref|AP_003351.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|157162239|ref|YP_001459557.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli HS]
 gi|170082356|ref|YP_001731676.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901923|ref|YP_002927719.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli BW2952]
 gi|254037835|ref|ZP_04871893.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia sp. 1_1_43]
 gi|256024712|ref|ZP_05438577.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp.
           4_1_40B]
 gi|300906690|ref|ZP_07124378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           84-1]
 gi|300950513|ref|ZP_07164423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           116-1]
 gi|300958099|ref|ZP_07170259.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           175-1]
 gi|301026290|ref|ZP_07189745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           196-1]
 gi|301304553|ref|ZP_07210663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           124-1]
 gi|301645251|ref|ZP_07245203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           146-1]
 gi|307139471|ref|ZP_07498827.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli H736]
 gi|312972999|ref|ZP_07787172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           1827-70]
 gi|331643470|ref|ZP_08344601.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H736]
 gi|1723811|sp|P55135|RUMA_ECOLI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|62738954|pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
           Methyltransferase Ruma In Complex With  Ribosomal Rna
           Substrate And S-Adenosylhomocysteine.
 gi|62738955|pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
           Methyltransferase Ruma In Complex With  Ribosomal Rna
           Substrate And S-Adenosylhomocysteine.
 gi|882679|gb|AAA69295.1| alternate gene name ygcA; ORF_f433 [Escherichia coli str. K-12
           substr. MG1655]
 gi|1789148|gb|AAC75827.1| 23S rRNA m(5)U1939 methyltransferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|85675604|dbj|BAE76859.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|157067919|gb|ABV07174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli HS]
 gi|169890191|gb|ACB03898.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|226839459|gb|EEH71480.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia sp. 1_1_43]
 gi|238859753|gb|ACR61751.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli BW2952]
 gi|260448164|gb|ACX38586.1| RNA methyltransferase, TrmA family [Escherichia coli DH1]
 gi|299879749|gb|EFI87960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           196-1]
 gi|300315219|gb|EFJ65003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           175-1]
 gi|300401525|gb|EFJ85063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           84-1]
 gi|300450173|gb|EFK13793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           116-1]
 gi|300840157|gb|EFK67917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           124-1]
 gi|301076454|gb|EFK91260.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           146-1]
 gi|309703143|emb|CBJ02477.1| 23s rRNA (uracil-5-)-methyltransferase [Escherichia coli ETEC
           H10407]
 gi|310332941|gb|EFQ00155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           1827-70]
 gi|315137392|dbj|BAJ44551.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli DH1]
 gi|315256644|gb|EFU36612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           85-1]
 gi|315615171|gb|EFU95808.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 3431]
 gi|323935853|gb|EGB32156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E1520]
 gi|323941534|gb|EGB37716.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E482]
 gi|331036941|gb|EGI09165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H736]
 gi|332344676|gb|AEE58010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           UMNK88]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|170681551|ref|YP_001744947.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           SMS-3-5]
 gi|170519269|gb|ACB17447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           SMS-3-5]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|110806549|ref|YP_690069.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 5
           str. 8401]
 gi|122957267|sp|Q0T1Q1|RUMA_SHIF8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|110616097|gb|ABF04764.1| putative enzyme [Shigella flexneri 5 str. 8401]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|320173231|gb|EFW48441.1| 23S rRNA 5-methyluridine methyltransferase [Shigella dysenteriae
           CDC 74-1112]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVASALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|301027558|ref|ZP_07190891.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           69-1]
 gi|300394901|gb|EFJ78439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           69-1]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 31/189 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q NAG+N  M    LEW+      +Q +  +L+L+CG GNF+L LA     V+ VE  
Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  + N   N ++NV     + +E               D+    +    F  + +
Sbjct: 318 PALVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H
Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422

Query: 356 MECGVLLVR 364
           +E  VL  R
Sbjct: 423 LESMVLFSR 431


>gi|82778167|ref|YP_404516.1| 23S rRNA 5-methyluridine methyltransferase [Shigella dysenteriae
           Sd197]
 gi|309786100|ref|ZP_07680729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae
           1617]
 gi|91207812|sp|Q32CD0|RUMA_SHIDS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|81242315|gb|ABB63025.1| putative enzyme [Shigella dysenteriae Sd197]
 gi|308926211|gb|EFP71689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae
           1617]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|74313357|ref|YP_311776.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sonnei Ss046]
 gi|91207813|sp|Q3YY71|RUMA_SHISS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|73856834|gb|AAZ89541.1| putative enzyme [Shigella sonnei Ss046]
 gi|323167875|gb|EFZ53566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella sonnei 53G]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|24114069|ref|NP_708579.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 2a
           str. 301]
 gi|30064130|ref|NP_838301.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|50401544|sp|Q83QD5|RUMA_SHIFL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|24053196|gb|AAN44286.1| putative enzyme [Shigella flexneri 2a str. 301]
 gi|30042386|gb|AAP18111.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|281602145|gb|ADA75129.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Shigella flexneri
           2002017]
 gi|313647845|gb|EFS12291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri 2a
           str. 2457T]
 gi|332753501|gb|EGJ83881.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           4343-70]
 gi|332753637|gb|EGJ84016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           K-671]
 gi|332754531|gb|EGJ84897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           2747-71]
 gi|332765736|gb|EGJ95949.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           2930-71]
 gi|332999536|gb|EGK19121.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           VA-6]
 gi|333000330|gb|EGK19913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           K-218]
 gi|333001142|gb|EGK20712.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           K-272]
 gi|333015340|gb|EGK34680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           K-304]
 gi|333015781|gb|EGK35118.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           K-227]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|300923242|ref|ZP_07139296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           182-1]
 gi|301325725|ref|ZP_07219182.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           78-1]
 gi|300420481|gb|EFK03792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           182-1]
 gi|300847475|gb|EFK75235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           78-1]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|294101799|ref|YP_003553657.1| RNA methyltransferase, TrmA family [Aminobacterium colombiense DSM
           12261]
 gi|293616779|gb|ADE56933.1| RNA methyltransferase, TrmA family [Aminobacterium colombiense DSM
           12261]
          Length = 464

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 80/157 (50%), Gaps = 20/157 (12%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           QG  LELY G G  SL LA  FD ++ VE    +VEA R N+  N  +NV          
Sbjct: 318 QGRALELYSGVGALSLFLASKFDNLVTVEDWPSAVEAMRKNLELNDFHNVS--------- 368

Query: 270 TQAMRREREFNRLKDIDIH-SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326
                      R +D+  H    F ++ +DPPRSG +   +  +  +    ILY++CNP 
Sbjct: 369 -------PHTGRAEDVIFHLDGPFNSVILDPPRSGCNRQVIQRILEWKPQQILYVACNPA 421

Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           +L RD+++L    + +E+L  FD FP T H+EC  LL
Sbjct: 422 TLARDIALLYEGGYRLEKLQPFDMFPQTVHVECVALL 458


>gi|218706281|ref|YP_002413800.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           UMN026]
 gi|293406277|ref|ZP_06650203.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli
           FVEC1412]
 gi|298382014|ref|ZP_06991611.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300898161|ref|ZP_07116523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           198-1]
 gi|218433378|emb|CAR14280.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli UMN026]
 gi|291426283|gb|EFE99315.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli
           FVEC1412]
 gi|298277154|gb|EFI18670.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300358136|gb|EFJ74006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           198-1]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|331674278|ref|ZP_08375038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA280]
 gi|331068372|gb|EGI39767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA280]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|324119827|gb|EGC13706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E1167]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|215488102|ref|YP_002330533.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312964949|ref|ZP_07779189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           2362-75]
 gi|215266174|emb|CAS10600.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312290505|gb|EFR18385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           2362-75]
 gi|323188799|gb|EFZ74084.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           RN587/1]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|315127392|ref|YP_004069395.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification
           at position U1939, SAM-dependent [Pseudoalteromonas sp.
           SM9913]
 gi|315015906|gb|ADT69244.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification
           at position U1939, SAM-dependent [Pseudoalteromonas sp.
           SM9913]
          Length = 441

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 33/193 (17%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVE 238
           N+F Q NA +N  ML     W+      +QGD  +L+L+CG GNFSLVLA+    V  +E
Sbjct: 270 NNFIQVNASVNQAMLIQAVSWL-----ALQGDENVLDLFCGIGNFSLVLAKQAKTVTGIE 324

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               +V  A  N    H N++   +    + T ++++   FN  K++DI       + +D
Sbjct: 325 GVTSAVALATQNA---HTNSITNTQFHCFDLTTSIKKAPWFN--KELDI-------LVLD 372

Query: 299 PPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352
           P R+G     + +++  P      ILY+SC+P +L RD +I+S     + ++ L + FP+
Sbjct: 373 PSRTG----AMAVLEQLPLTQFKAILYVSCDPVTLARDSAIISQAGFELNKIGLMNMFPH 428

Query: 353 TRHMECGVLLVRK 365
           T H+E   L  R+
Sbjct: 429 TGHIETMALFQRR 441


>gi|82545084|ref|YP_409031.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii Sb227]
 gi|91207811|sp|Q31XK5|RUMA_SHIBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|81246495|gb|ABB67203.1| putative enzyme [Shigella boydii Sb227]
 gi|332091873|gb|EGI96951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii
           3594-74]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVASALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|188495297|ref|ZP_03002567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           53638]
 gi|188490496|gb|EDU65599.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           53638]
          Length = 433

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|293416032|ref|ZP_06658672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B185]
 gi|291432221|gb|EFF05203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B185]
          Length = 433

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|91212152|ref|YP_542138.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli UTI89]
 gi|117625013|ref|YP_854001.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli APEC
           O1]
 gi|218559773|ref|YP_002392686.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli S88]
 gi|237706587|ref|ZP_04537068.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp.
           3_2_53FAA]
 gi|122422654|sp|Q1R7Q7|RUMA_ECOUT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|143580911|sp|A1AEX2|RUMA_ECOK1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|91073726|gb|ABE08607.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           UTI89]
 gi|115514137|gb|ABJ02212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli APEC
           O1]
 gi|218366542|emb|CAR04295.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli S88]
 gi|226899627|gb|EEH85886.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp.
           3_2_53FAA]
 gi|294492471|gb|ADE91227.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           IHE3034]
 gi|307625646|gb|ADN69950.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli UM146]
 gi|315289302|gb|EFU48697.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           110-3]
 gi|323950998|gb|EGB46874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H252]
 gi|323957203|gb|EGB52927.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H263]
          Length = 433

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+    +     +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVEPEDC---VLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|300936300|ref|ZP_07151232.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           21-1]
 gi|300458552|gb|EFK22045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           21-1]
          Length = 433

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|297528764|ref|YP_003670039.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
 gi|297252016|gb|ADI25462.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
          Length = 462

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 167/387 (43%), Gaps = 55/387 (14%)

Query: 10  YEQQLAEKVDRLRQMM----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL  K ++++ ++        V    I    P HYR + EF    +G    H    +
Sbjct: 97  YEGQLRHKTEQVKALLAQRGFDPDVVRETIGMERPWHYRNKMEFTFSPEGLLGLH----E 152

Query: 66  QTKERMRIDY---FMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLT 111
           Q   R  I      + G  ++ A M E+    R            E LLR  + +  + T
Sbjct: 153 QGNFRQVISLETCLIAGEKIVKAAM-EVARWARDHQLPGYHKDTHEGLLRHVMVRESFAT 211

Query: 112 SQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
            +   A+  T      L +A  +   R+  AL   K  + L  RA       DR   ++ 
Sbjct: 212 GEVMVALFATEAPEGELKEAAADLTERITKALPEVKSLLWLENRA-----WADRTQAEQT 266

Query: 171 LTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
             +AGR  IY ++         ++F Q N      ++E  L         ++++L+CG G
Sbjct: 267 HVLAGRDFIYDELCGFRYRLWFDTFFQTNPVQAAKLVELALEMGEPQPHENMIDLFCGVG 326

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            FSL  A+    +  +EI + S+E+A+ N   N ++N   +              R+  R
Sbjct: 327 TFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFL-------------ARDARR 373

Query: 282 LKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS-ILST 337
             D  +  + R + + +DPPRSG     +  + +A P  ++Y+SCNP++   D++ ++  
Sbjct: 374 GIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFASDITELVPF 433

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +T+E +   D FP+T H+EC  LLVR
Sbjct: 434 GYTLETVQPVDMFPHTAHVECCALLVR 460


>gi|331664345|ref|ZP_08365251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA143]
 gi|284922722|emb|CBG35810.1| 23s rRNA (uracil-5-)-methyltransferase [Escherichia coli 042]
 gi|331058276|gb|EGI30257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA143]
          Length = 433

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNDLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|157157194|ref|YP_001464107.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           E24377A]
 gi|170018969|ref|YP_001723923.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli ATCC
           8739]
 gi|193071100|ref|ZP_03052025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E110019]
 gi|256019428|ref|ZP_05433293.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9]
 gi|293449111|ref|ZP_06663532.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B088]
 gi|300820571|ref|ZP_07100722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           119-7]
 gi|300920362|ref|ZP_07136799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           115-1]
 gi|307312786|ref|ZP_07592416.1| RNA methyltransferase, TrmA family [Escherichia coli W]
 gi|309795251|ref|ZP_07689670.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           145-7]
 gi|331669519|ref|ZP_08370365.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA271]
 gi|331678762|ref|ZP_08379436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H591]
 gi|331684405|ref|ZP_08384997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H299]
 gi|332280548|ref|ZP_08392961.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9]
 gi|157079224|gb|ABV18932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E24377A]
 gi|169753897|gb|ACA76596.1| RNA methyltransferase, TrmA family [Escherichia coli ATCC 8739]
 gi|192955561|gb|EDV86039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E110019]
 gi|291322201|gb|EFE61630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B088]
 gi|300412625|gb|EFJ95935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           115-1]
 gi|300526835|gb|EFK47904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           119-7]
 gi|306907221|gb|EFN37727.1| RNA methyltransferase, TrmA family [Escherichia coli W]
 gi|308121222|gb|EFO58484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           145-7]
 gi|315062067|gb|ADT76394.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli W]
 gi|320202429|gb|EFW76999.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           EC4100B]
 gi|323172912|gb|EFZ58543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           LT-68]
 gi|323183324|gb|EFZ68721.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 1357]
 gi|323377350|gb|ADX49618.1| RNA methyltransferase, TrmA family [Escherichia coli KO11]
 gi|331063187|gb|EGI35100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA271]
 gi|331073592|gb|EGI44913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H591]
 gi|331078020|gb|EGI49226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H299]
 gi|332102900|gb|EGJ06246.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9]
          Length = 433

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|293412132|ref|ZP_06654855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B354]
 gi|291468903|gb|EFF11394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B354]
          Length = 223

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 53  FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 109

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 110 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 154

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 155 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 214

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 215 SMVLFSR 221


>gi|222034476|emb|CAP77218.1| 23S rRNA [Escherichia coli LF82]
 gi|312947312|gb|ADR28139.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 433

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVEP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|191168556|ref|ZP_03030341.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B7A]
 gi|190901403|gb|EDV61167.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B7A]
          Length = 433

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 31/189 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q NAG+N  M    LEW+      +Q +  +L+L+CG GNF+L LA     V+ VE  
Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  + N   N + NV     + +E               D+    +    F  + +
Sbjct: 318 PALVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H
Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422

Query: 356 MECGVLLVR 364
           +E  VL  R
Sbjct: 423 LESMVLFSR 431


>gi|262404764|ref|ZP_06081319.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC586]
 gi|262349796|gb|EEY98934.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC586]
          Length = 440

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 173/382 (45%), Gaps = 72/382 (18%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFDQQT 67
           Q+  K   L Q+M+ F   +L +  S P+      YR RA   +          M+D++T
Sbjct: 101 QINHKQQALSQLMVKFAGQSLAL--SAPVCSDDQGYRRRARLSL----------MWDKKT 148

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           ++ ++  +    S  I    + +     LEP L A L +++ L SQ  Q         + 
Sbjct: 149 QQ-LQFGFRRKQSKAI----VNVTHCPVLEPSLNALLPELNTLLSQWCQPEQLGHVELVK 203

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--------------DRDYVDERLTV 173
            D  R  A+R   AL  +  Q +L   A++ ++ L              +  Y +E    
Sbjct: 204 GDNARVLALRHVGALTEQDQQ-RLTDFASQNQLTLYLALEAGTLQHVQGEPPYCEE---- 258

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  L +  + + F Q N  +N  M+E  L   +  + D +L+L+CG GNF+L LA+   
Sbjct: 259 TGSRLSF--LPSHFIQVNRAVNQKMVEQALHWLEVSEQDRVLDLFCGLGNFTLPLAKQAQ 316

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-- 290
            V+ VE  +  V+ A +N   N +NNV         F QA       N  +D+   S+  
Sbjct: 317 EVVGVEGVEEMVQHATHNAKLNQINNVT--------FYQA-------NLEQDMTTASWAQ 361

Query: 291 -RFKTIFVDPPRSGLDDATVGMVQ-----AYPHILYISCNPDSLCRD-LSILSTTHTIER 343
            +F  + +DP R+G +    G+V+         ++Y+SCNP +L RD  S+LS    +E+
Sbjct: 362 QKFAKVLLDPARAGAE----GIVEQLAALGAERVVYVSCNPATLARDSQSLLSQGFCLEK 417

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           L + D FP+T H+E   L V+K
Sbjct: 418 LGMLDMFPHTSHLESMALFVKK 439


>gi|220930233|ref|YP_002507142.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10]
 gi|220000561|gb|ACL77162.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10]
          Length = 460

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 20/185 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  I   +L        G+ G+  + +LYCG G  SL L++   RV+ VE+   +
Sbjct: 287 SFFQVNP-IQTEVLYEKALEYAGLSGNETVFDLYCGIGTISLYLSQRAKRVIGVEVVPDA 345

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +  AR N   N + NV+ +   +++             + D+     +   + VDPPR G
Sbjct: 346 ISDARRNAELNGITNVEFLVGEAEKV------------IPDMYSQGVKADVVVVDPPRKG 393

Query: 304 LDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE--RLALFDQFPYTRHMECG 359
            D+  +  +V+  P  I+Y+SCNP +L RDL  L T H  E   +   D FP+T H+EC 
Sbjct: 394 CDEVLLSTLVEMQPQRIVYVSCNPSTLARDLKYL-TEHGFEVKEVQPVDMFPWTGHVECV 452

Query: 360 VLLVR 364
           VL+ R
Sbjct: 453 VLMSR 457


>gi|166033376|ref|ZP_02236205.1| hypothetical protein DORFOR_03102 [Dorea formicigenerans ATCC
           27755]
 gi|166027733|gb|EDR46490.1| hypothetical protein DORFOR_03102 [Dorea formicigenerans ATCC
           27755]
          Length = 378

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 22/216 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
            ++ K      ++ +RL       ++R    SF Q N  +   +L        G+ G   
Sbjct: 180 GDREKPIFGPGFIKDRLC----GCMFRISPKSFYQVNP-VQTAILYQTAIDYAGLTGKET 234

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L+ A+   +V+ VE+ K +V+ AR N   N + N    +  +  F   
Sbjct: 235 VIDAYCGIGTIGLIAAKKAGKVIGVELNKDAVKDARINAKENKITNAAFYQGDAGRFMVE 294

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
           M  + E            +   +F+DPPR+G D+  +  +V+  P  ++YISCNP++L R
Sbjct: 295 MAAKGE------------KADVVFMDPPRAGSDERFLSSVVKLSPKKVIYISCNPETLAR 342

Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  H  +E++   D FP+  H E    LVRK
Sbjct: 343 DLKYLTKHHYKVEKIQPVDMFPFCDHCETVCELVRK 378


>gi|197121913|ref|YP_002133864.1| (uracil-5)-methyltransferase [Anaeromyxobacter sp. K]
 gi|196171762|gb|ACG72735.1| (Uracil-5)-methyltransferase [Anaeromyxobacter sp. K]
          Length = 438

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 147/361 (40%), Gaps = 29/361 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           E+ L E + R+ ++          +    P+ YR RA+FH  HD      + F +++ E 
Sbjct: 100 ERSLHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HDRAAGRLVFFRRRSHEP 157

Query: 71  MRI---DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +R+       PG   +   +   +A  +L P    +   +++ +  +++    L    LL
Sbjct: 158 VRLRECHLLSPGLDALREAVGPALAAAKLSP----REVALEW-SDAAERGAAWL----LL 208

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR--TLIYRQIEN 185
            +       R    L A      L+ +A   +     D V  +    GR      R   +
Sbjct: 209 PEVTAPVRARAEALLRAVPSLQGLVLQAEGGQPVTAGDPVLRQARAPGRPEAGTQRSRPD 268

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            F Q N G N  ++E  L        ++LEL+CG GNF+  L+     V AVE+  P+++
Sbjct: 269 VFQQANRGANARLVETALELLAPAGEEVLELHCGAGNFTGPLSERARSVSAVEVQGPALD 328

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR ++      NV+     +    +A  RE            + RF    +DPPR G  
Sbjct: 329 LARADLGG---RNVRFFAGDALALARAFGRE--------AGPGARRFGAALLDPPREGAR 377

Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
                +     P  +Y+SC+P +  RDL + +   + +  +   D FP T H+E   LL 
Sbjct: 378 GIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMFPQTHHVEGVALLE 437

Query: 364 R 364
           R
Sbjct: 438 R 438


>gi|332827346|gb|EGK00106.1| hypothetical protein HMPREF9455_03572 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 503

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 26/210 (12%)

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218
           E LT  G   IY ++E         SF Q N+    + L  V +    + GD L  +LY 
Sbjct: 307 EVLTWKGNDFIYEEMEGLKFKIGPKSFYQTNSE-QAYNLYKVASDFARLNGDELVYDLYT 365

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRRER 277
           G G  +  +AR   +V+ +E  + ++E AR+N   N ++N        K+  TQ    E 
Sbjct: 366 GTGTIANFVARQSKKVVGIEYVEDAIEDARFNSMNNKIDNTLFYAGDMKDILTQDFINEH 425

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL 335
                        R   I  DPPR+G+ DD    ++ A P  I+Y+SCNP +  RDLS+L
Sbjct: 426 G------------RPDVIITDPPRAGMHDDVIKSILFAEPQRIVYVSCNPATQARDLSLL 473

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + + ++   D FP+T H+E  VLL ++
Sbjct: 474 DEKYKVTKVQPVDMFPHTHHVENVVLLEKR 503


>gi|262041526|ref|ZP_06014723.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041087|gb|EEW42161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 434

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 27/188 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N G+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNDGVNQQMVRTALEWLDLRP---EDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N A N ++NV     + +E               D+   ++    F  + +DP
Sbjct: 320 LVEKGRENSARNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  ++Y+SCNP +L RD  ++L   + I+RLA+ D FP+T H+E
Sbjct: 365 ARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLE 424

Query: 358 CGVLLVRK 365
             VL  R+
Sbjct: 425 SMVLFERR 432


>gi|218701501|ref|YP_002409130.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli IAI39]
 gi|218371487|emb|CAR19323.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli IAI39]
          Length = 433

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLHNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|194434671|ref|ZP_03066925.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae
           1012]
 gi|194417068|gb|EDX33183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae
           1012]
 gi|332089082|gb|EGI94192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae
           155-74]
          Length = 433

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 31/189 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q NAG+N  M    LEW+      +Q +  +L+L+CG GNF+L LA     V++VE  
Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVSVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  + N   N + NV     + +E               D+    +    F  + +
Sbjct: 318 PALVEKGQQNARLNGLQNVTFYHENLEE---------------DVTNQPWAKNGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H
Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422

Query: 356 MECGVLLVR 364
           +E  VL  R
Sbjct: 423 LESMVLFSR 431


>gi|15832899|ref|NP_311672.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|13363116|dbj|BAB37068.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
          Length = 433

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLEVEP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNCLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|331648510|ref|ZP_08349598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M605]
 gi|330908811|gb|EGH37325.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Escherichia coli
           AA86]
 gi|331042257|gb|EGI14399.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M605]
          Length = 433

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 31/189 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q NAG+N  M    LEW+      +Q +  +L+L+CG GNF+L LA     V+ VE  
Sbjct: 263 FIQVNAGVNQKMVARALEWL-----DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  + N   N + NV     + +E               D+    +    F  + +
Sbjct: 318 PALVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H
Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422

Query: 356 MECGVLLVR 364
           +E  VL  R
Sbjct: 423 LESMVLFSR 431


>gi|77359689|ref|YP_339264.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification
           at position U1939, SAM-dependent [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123587143|sp|Q3IDM6|RUMA_PSEHT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|76874600|emb|CAI85821.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification
           at position U1939, SAM-dependent [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 441

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 21/187 (11%)

Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           N+F Q NA +N  ML+    W+  A KG + ++L+L+CG GNFSLVLA+    V+ VE  
Sbjct: 270 NNFIQVNASVNQAMLKQAQNWL--ALKGDE-NVLDLFCGIGNFSLVLAKQAKTVIGVEGV 326

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +V  A  N    H N++   + +  + T  +     FN  K++D+       + +DP 
Sbjct: 327 ASAVAMATQNA---HTNSITNAQFNCFDLTNKIETASWFN--KNLDV-------LVLDPS 374

Query: 301 RSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMEC 358
           R+G       + ++ +  ILY+SC+P +L RD +I+S     + ++ L + FP+T H+E 
Sbjct: 375 RTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHKIGLMNMFPHTGHIET 434

Query: 359 GVLLVRK 365
             L  R+
Sbjct: 435 MALFQRR 441


>gi|26249186|ref|NP_755226.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           CFT073]
 gi|110642926|ref|YP_670656.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 536]
 gi|191171273|ref|ZP_03032823.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli F11]
 gi|218690908|ref|YP_002399120.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli ED1a]
 gi|227888323|ref|ZP_04006128.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 83972]
 gi|300976049|ref|ZP_07173264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           45-1]
 gi|300976310|ref|ZP_07173374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           200-1]
 gi|301049458|ref|ZP_07196416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           185-1]
 gi|306812335|ref|ZP_07446533.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli NC101]
 gi|331658896|ref|ZP_08359838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA206]
 gi|34222885|sp|Q8FEG6|RUMA_ECOL6 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|123147767|sp|Q0TE74|RUMA_ECOL5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|26109593|gb|AAN81796.1|AE016765_198 23S rRNA (Uracil-5-)-methyltransferase rumA [Escherichia coli
           CFT073]
 gi|110344518|gb|ABG70755.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 536]
 gi|190908573|gb|EDV68162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli F11]
 gi|218428472|emb|CAR09398.2| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli ED1a]
 gi|227834592|gb|EEJ45058.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 83972]
 gi|281179786|dbj|BAI56116.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|300298689|gb|EFJ55074.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           185-1]
 gi|300308552|gb|EFJ63072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           200-1]
 gi|300410146|gb|EFJ93684.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           45-1]
 gi|305854373|gb|EFM54811.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli NC101]
 gi|307554757|gb|ADN47532.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli ABU
           83972]
 gi|315293742|gb|EFU53094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           153-1]
 gi|315298722|gb|EFU57976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           16-3]
 gi|320194924|gb|EFW69553.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           WV_060327]
 gi|324005669|gb|EGB74888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           57-2]
 gi|324015533|gb|EGB84752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           60-1]
 gi|331053478|gb|EGI25507.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA206]
          Length = 433

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVEP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|15803306|ref|NP_289339.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 EDL933]
 gi|168750996|ref|ZP_02776018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758476|ref|ZP_02783483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764498|ref|ZP_02789505.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766753|ref|ZP_02791760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4486]
 gi|168778773|ref|ZP_02803780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788043|ref|ZP_02813050.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC869]
 gi|168802534|ref|ZP_02827541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC508]
 gi|195936387|ref|ZP_03081769.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809717|ref|ZP_03252054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813103|ref|ZP_03254432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820580|ref|ZP_03260900.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399664|ref|YP_002272250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4115]
 gi|217326646|ref|ZP_03442729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. TW14588]
 gi|254794727|ref|YP_003079564.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|261226084|ref|ZP_05940365.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256661|ref|ZP_05949194.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284114|ref|YP_003500932.1| 23S rRNA (uracil-5-)-methyltransferase rumA (23S rRNA(M-
           5-U1939)-methyltransferase) [Escherichia coli O55:H7
           str. CB9615]
 gi|20140032|sp|Q8XED8|RUMA_ECO57 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|12517257|gb|AAG57898.1|AE005506_6 putative enzyme [Escherichia coli O157:H7 str. EDL933]
 gi|188014871|gb|EDU52993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4113]
 gi|189003420|gb|EDU72406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354711|gb|EDU73130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363623|gb|EDU82042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365488|gb|EDU83904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372225|gb|EDU90641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC869]
 gi|189375496|gb|EDU93912.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC508]
 gi|208729518|gb|EDZ79119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734380|gb|EDZ83067.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740703|gb|EDZ88385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161064|gb|ACI38497.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209761438|gb|ACI79031.1| putative enzyme [Escherichia coli]
 gi|209761440|gb|ACI79032.1| putative enzyme [Escherichia coli]
 gi|209761442|gb|ACI79033.1| putative enzyme [Escherichia coli]
 gi|209761444|gb|ACI79034.1| putative enzyme [Escherichia coli]
 gi|209761446|gb|ACI79035.1| putative enzyme [Escherichia coli]
 gi|217319013|gb|EEC27438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594127|gb|ACT73488.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|290763987|gb|ADD57948.1| 23S rRNA (uracil-5-)-methyltransferase rumA (23S rRNA(M-
           5-U1939)-methyltransferase) [Escherichia coli O55:H7
           str. CB9615]
 gi|320189118|gb|EFW63777.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640433|gb|EFX09972.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H7 str.
           G5101]
 gi|320645680|gb|EFX14665.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H- str.
           493-89]
 gi|320650980|gb|EFX19420.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H- str.
           H 2687]
 gi|320656476|gb|EFX24372.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662372|gb|EFX29769.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667070|gb|EFX34033.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326339143|gb|EGD62958.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. 1044]
 gi|326342974|gb|EGD66742.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. 1125]
          Length = 433

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLEVEP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNCLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|320182397|gb|EFW57294.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii ATCC
           9905]
          Length = 433

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTNQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|332087562|gb|EGI92690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii
           5216-82]
          Length = 433

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTNQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFSR 431


>gi|269101852|ref|ZP_06154549.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161750|gb|EEZ40246.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 441

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 169/377 (44%), Gaps = 57/377 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMF- 63
           ++ Q+  K   L ++M  F   +  I +++PI     HYR  A F I  D        F 
Sbjct: 98  HQGQVTAKQQSLTELMTKFAGADQAITQAKPIVGPDTHYRRCARFGIRLDNRGQLQFGFR 157

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIR--LEPLL-RAKLFQIDYLTSQSDQAIVT 120
            +Q+KE + +    P  +++   + E++  +R  L  L  R  L  ++ +  ++D   V 
Sbjct: 158 KKQSKEIVDV----PQCMVLAQSLNELLPVLRELLNSLKGRKHLGHVELV--EADNGRVV 211

Query: 121 LIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANK---TKICLDRDYVDERLTVAGR 176
           +I H +   DA     +       A+  QI L          +I  DR Y +    +  +
Sbjct: 212 MIRHLQPFSDADMSKLLEF-----AKSQQIMLFMAPTADSIEQIFGDRPYYE----LDCQ 262

Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARH 230
            L +      F Q N  +N+ M    ++W+      +Q D  +L+L+CG GNFSL LA+ 
Sbjct: 263 KLYFS--PKDFIQVNRDVNIAMVKQAIDWL-----DVQADDRVLDLFCGLGNFSLPLAKR 315

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHS 289
            + ++ VE     V  A+ N   N +NN    + +  ++ T+    ++ FN+        
Sbjct: 316 ANTLVGVEGVDEMVHRAQDNAQYNQINNAAFFQANLEQDVTEFSWAKKPFNK-------- 367

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALF 347
                I +DP R+G       +V+  P  ++Y+SCNP +L RD  I L   + + +L + 
Sbjct: 368 -----ILLDPARAGAAGVMEHVVKLAPEKVVYVSCNPATLARDSQILLHKGYQLTQLGMM 422

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H+E   L VR
Sbjct: 423 DMFPHTGHLESMALFVR 439


>gi|56418892|ref|YP_146210.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56378734|dbj|BAD74642.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 462

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 26/215 (12%)

Query: 163 DRDYVDERLTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKG-IQGDL 213
           DR   ++   +AGR  IY ++         ++F Q N      ++E  L   K     ++
Sbjct: 259 DRTQAEQTHVLAGRDFIYDELCGFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHENM 318

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++L+CG G FSL  A+    +  +EI + S+E+A+ N   N ++N   +           
Sbjct: 319 IDLFCGVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFL----------- 367

Query: 274 RREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
              R+  R  D  +  + R + + +DPPRSG     +  + +A P  ++Y+SCNP++   
Sbjct: 368 --ARDARRGIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFAS 425

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D++ ++S  +T++ +   D FP+T H+EC  LLVR
Sbjct: 426 DITELVSFGYTLKTVQPVDMFPHTAHVECCALLVR 460


>gi|116493111|ref|YP_804846.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103261|gb|ABJ68404.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC
           25745]
          Length = 455

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 170/385 (44%), Gaps = 53/385 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y+ QL  K ++++ ++    + +L++  +     P  YR +A+  +      L    F +
Sbjct: 93  YDAQLKFKQNQIKNLLKKSHLEDLEVADTVGMENPTGYRNKAQIPVRKIKGKLQTGFFKR 152

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + + + I+ F     +I+ +++E+   +R         F ID      ++ I+  I  R
Sbjct: 153 NSHDLVPIEDFYIQDPVIDKVIVEVRDILRE--------FYIDPYREAENKGIIRNIMVR 204

Query: 126 LLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKICLDRDYV-------DERLTVAG 175
               + +   +   R +D  H  +    +        +  + +Y        DE   +AG
Sbjct: 205 RGRRSGQIMVVLITRTKDVPHLAEITEAIAAIDGVVSVIQNINYKQTNVIMGDEDRVLAG 264

Query: 176 RTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
            ++I+ ++         +SF Q N  I    L  +     G+ G+  ++++Y G G  SL
Sbjct: 265 ESVIHDELLGLDFIISAHSFYQVNP-IQTEKLYQLAIDKAGLTGEETVIDVYSGIGTISL 323

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+   +V  VEI K +V+ A+ N   N+ +N + V   ++E    M++ +E     D+
Sbjct: 324 AMAKAAKKVYGVEIVKEAVQDAKINAFQNNASNTEFVVGKAEE---QMQKWQEDGLKPDV 380

Query: 286 DIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341
                    + VDPPR GLD    DATVGM      ++Y+SCNP +L RD+        +
Sbjct: 381 ---------VVVDPPRKGLDQSVIDATVGM--KPKRVVYVSCNPATLVRDIDRFGEQGYV 429

Query: 342 --ERLALFDQFPYTRHMECGVLLVR 364
             + +   DQFP T H+E   +L R
Sbjct: 430 VNQPIVPVDQFPQTPHVESVTVLER 454


>gi|145640279|ref|ZP_01795863.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           R3021]
 gi|145274865|gb|EDK14727.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           22.4-21]
          Length = 404

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 235 FIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 294

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N A N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 295 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 341

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 342 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 401

Query: 363 VRK 365
             K
Sbjct: 402 TTK 404


>gi|145628685|ref|ZP_01784485.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145638756|ref|ZP_01794365.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           PittII]
 gi|144979155|gb|EDJ88841.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145272351|gb|EDK12259.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           PittII]
 gi|309750246|gb|ADO80230.1| 23S rRNA m5U1939 methyltransferase [Haemophilus influenzae R2866]
          Length = 438

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N A N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|212697151|ref|ZP_03305279.1| hypothetical protein ANHYDRO_01717 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675926|gb|EEB35533.1| hypothetical protein ANHYDRO_01717 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 547

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 125/275 (45%), Gaps = 43/275 (15%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +R  LF  + L +++D  IV+ IYH + D         L DA+           + +  +
Sbjct: 225 MRRDLFAHNLLNAKTDGRIVS-IYHVINDS--------LSDAV-----------KVDSME 264

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +   + Y++E++      L ++    SF QPN      + +  +  A      ++L+LY 
Sbjct: 265 LLFGKKYIEEKMN----DLKFQISPFSFFQPNVFTAEKIYQKAIELANVDKNKNILDLYS 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  + + A+  ++ + +EI + +VE A  N   N + N+  +                
Sbjct: 321 GTGTITQLFAKSANKAMGIEIVEEAVEKAFDNAKENQIENIDFIAG-------------- 366

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI-L 335
            + L+ I++   ++  + +DPPR G++   +  +        +YISCNP +  RD+ I +
Sbjct: 367 -DVLEKINLVKGKYDIVVLDPPREGINPKAIKKIMDINPKEFVYISCNPKTQVRDIEIFM 425

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
              + +E+   FDQFP +RH+E   LL +  +  H
Sbjct: 426 ENGYIVEKYQAFDQFPRSRHVETVALLSKLNTEHH 460


>gi|239617809|ref|YP_002941131.1| RNA methyltransferase, TrmA family [Kosmotoga olearia TBF 19.5.1]
 gi|239506640|gb|ACR80127.1| RNA methyltransferase, TrmA family [Kosmotoga olearia TBF 19.5.1]
          Length = 440

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 166/378 (43%), Gaps = 42/378 (11%)

Query: 9   QYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMF 63
           QY  QL  K     ++ R++   +++P+ ++  S+   HYR R E+  +  G  +   M+
Sbjct: 82  QYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNRMEYVAYQKGKKIGFGMY 141

Query: 64  DQQTKERMRI---DYFMPGSLLINALMIEMMATIRLEPLLRAK---LFQIDYLTSQSDQA 117
            + + E + +   D    G   +     E+++   ++P  R       +   L    +  
Sbjct: 142 KRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNRESKRGFLKHLVLRGNRNGD 201

Query: 118 IVTLIYHRL-----LDDAWRECAIRLRDA---LHARKYQIQLIGRANKTKICLDRDYVDE 169
           IV L+  +      +D   RE   +L +    +H    +  ++ R    ++      + E
Sbjct: 202 IVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDDVVLRG-PYRVIYGEGIITE 260

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            L  A    +++    SF Q N  +   +L++V         +  L+LY G G F+   A
Sbjct: 261 TLGDA----VFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETFLDLYSGIGTFAFYFA 316

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R F +V+AVE  K S  A   N   N ++N++ V M +++F               ++ +
Sbjct: 317 RMFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDF---------------LEKN 361

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLAL 346
             +F  + +DPPR+G+      + +A P  I+YISCNP +L RD   LS    +++ L  
Sbjct: 362 EEKFDKVILDPPRAGIGKDIELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKALRA 421

Query: 347 FDQFPYTRHMECGVLLVR 364
           FD FP T H+E   +  R
Sbjct: 422 FDMFPDTHHVEVVAIFNR 439


>gi|309777091|ref|ZP_07672057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915161|gb|EFP60935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 441

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 150/341 (43%), Gaps = 33/341 (9%)

Query: 39  EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98
           E  HYR + +  +  D        +   +   +  D  +  S  IN ++ EM     L+ 
Sbjct: 120 EYTHYRNKGQIPVGMDKGKTVTGFYRINSNSIIDTDTCLIQSERINEVLQEMRRL--LQT 177

Query: 99  LLRAKLFQ---IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
              AK+F+   I +  S SD+ +V  I H       +E    L +AL   K  I  + + 
Sbjct: 178 YNNAKVFRHLLIKHAFS-SDEVMVVWIVHSFQIPHEKEMVRELSEALPFVKSIIVNLNQR 236

Query: 156 NKTKICLDRDYV--DERLTVAG-RTLIYRQIENSFTQPNAG----INVHMLEWVLAATKG 208
               I  +++ +   ER+ V     L +     SF Q N      +    LE+     K 
Sbjct: 237 TDNVILGEKEKLLYGERVIVDSIHDLKFSISSKSFYQVNPKQTEVLYGKALEFAQLTGKE 296

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               +L+LYCG G  S+ LA+    V  +EI   +++ AR N A N + N++ V   +  
Sbjct: 297 T---VLDLYCGVGTISMFLAQQARHVTGIEIVPQAIQDARKNAALNGIANIEFVCSDAAS 353

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPD 326
           + +         +L +  +H      I VDPPR G D +A   MV   P  I+Y+SC+P 
Sbjct: 354 YAK---------KLCEQGMH---LDVIVVDPPRKGCDAEAIESMVMMQPKRIVYVSCDPG 401

Query: 327 SLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           +L RDL +L     HT E +   + FP+T H+E  VLL RK
Sbjct: 402 TLARDLKLLKEKGYHT-EIVQPVEMFPFTHHVETVVLLCRK 441


>gi|313888449|ref|ZP_07822116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845478|gb|EFR32872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 542

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 14/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G+ SL +A+    V+ +EI + +V+ AR N   N++   + V   ++E  + 
Sbjct: 284 IYDLYCGVGSISLSVAKSGPEVIGIEIVESAVDDARENAEKNNIK-ARFVHGPAEETIEK 342

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           +  E +    K           I VDPPR GLD+  V  ++  P   ++YISCNP +  R
Sbjct: 343 LWEEEKIAPNK-----------IIVDPPRKGLDEKLVNFLKENPVERLVYISCNPATQAR 391

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L   + +E++++ + FP T H E   LL +
Sbjct: 392 DLKSLKEVYKVEKISVVNLFPNTAHCETVALLSK 425


>gi|145636398|ref|ZP_01792067.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           PittHH]
 gi|145270563|gb|EDK10497.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           PittHH]
          Length = 354

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L  A+     + +E     V+
Sbjct: 185 FIQVNSALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPFAKRVKSAVGIEGVFEMVQ 244

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N A N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 245 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 291

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 292 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 351

Query: 363 VRK 365
             K
Sbjct: 352 TTK 354


>gi|83590746|ref|YP_430755.1| RNA methyltransferase [Moorella thermoacetica ATCC 39073]
 gi|83573660|gb|ABC20212.1| 23S rRNA m(5)U-1939 methyltransferase [Moorella thermoacetica ATCC
           39073]
          Length = 473

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 24/227 (10%)

Query: 146 KYQIQLIGR--ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
           +YQ   + R    +      RDY++ERL      L +     +F Q N+     +L    
Sbjct: 259 RYQEGFVPRRLGGRPFTLYGRDYLEERLG----DLRFYISATTFFQVNS-AQAEVLYNKA 313

Query: 204 AATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A   G+QG  ++L+ YCG+G  +L L+R   RV  VE+   ++  AR N   N++ NV  
Sbjct: 314 ATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEGVEVVPEAIVDARRNSILNNLANVHF 373

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HIL 319
            R  + E             L  +    YR + I +DPPR+G D   +  V       ++
Sbjct: 374 -RTGAAEAV-----------LPRLAGKGYRPEVIILDPPRAGCDRRVLAAVATMEPRRVV 421

Query: 320 YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           YISCNP +L RDL+ L         +   D FP+T H+EC   LV++
Sbjct: 422 YISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVKE 468


>gi|51893956|ref|YP_076647.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
 gi|51857645|dbj|BAD41803.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 459

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 160/373 (42%), Gaps = 51/373 (13%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           QQ+ + V+RL ++      P L +  ++P  YR +A+F +      +    F   +   +
Sbjct: 104 QQVVDAVERLGRLSGVTVHPTLGM--ADPWGYRNKAQFPVGRRSGRVIAGFFAPGSHRIV 161

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPL---------LRAKLFQIDYLTSQSDQAIVT 120
            I+       L N +M E+  +A     P+         LR  L ++   T ++   +VT
Sbjct: 162 DIERCAIQHPLANRIMAEVKELAGRFGVPIYDERSHTGVLRHVLARVGRGTGEAMAVLVT 221

Query: 121 LIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
              H     D  RE   R+ + +      +Q I  A +T + L R    E   +AGR  I
Sbjct: 222 NGPHLPRGKDIARELMTRIPELVSV----VQNINPA-RTNVVLGR----ESRVLAGRDAI 272

Query: 180 YRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
              I +        SF Q N      + +  L    G+ G   +++LYCG G  SL LAR
Sbjct: 273 TDYIGDLQFSISPVSFFQVNPAQTEVLYDKALE-YAGLTGSETVIDLYCGIGTISLFLAR 331

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ +E  + +V  AR N A N + NV+ +   +           E  RL       
Sbjct: 332 RCREVVGIEWVEEAVADARENAARNGIGNVRFIAGDAAV---------EMPRLA---AEG 379

Query: 290 YRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTT--HTIERLA 345
            R   I +DPPR G D   +  + Q  P  ++Y+SCNP SL RDL  L+     T+E + 
Sbjct: 380 VRADVIVLDPPRKGCDGPVLEAIAQVAPRRVVYVSCNPASLARDLGRLAEMGYRTVE-VQ 438

Query: 346 LFDQFPYTRHMEC 358
             D FP+T H+EC
Sbjct: 439 PVDMFPHTAHVEC 451


>gi|307297804|ref|ZP_07577610.1| protein of unknown function Met10 [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917064|gb|EFN47446.1| protein of unknown function Met10 [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 439

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 20/184 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F Q N  +   ++  +    K   GD LL+LY G G FS+ + +   RV AVE    SV
Sbjct: 271 AFFQNNLEVTESIVSHIFNEMKDTAGDSLLDLYSGIGTFSITVGKKMGRVTAVESNPVSV 330

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +A + N   N +  ++IV     EF ++ +R                + TI +DPPRSG+
Sbjct: 331 KALKANSNLNGMFGIEIVSSDVIEFLKSDQRH---------------YSTIILDPPRSGV 375

Query: 305 DDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
             + +G++  +    + Y+SC+P +L RD + L  + + I  +  FD FP T H+E  V 
Sbjct: 376 -GSEIGLLDKFGASMVFYVSCDPTTLARDTAKLRESGYKISSVKAFDMFPQTWHVETVVC 434

Query: 362 LVRK 365
           LV+K
Sbjct: 435 LVKK 438


>gi|107100389|ref|ZP_01364307.1| hypothetical protein PaerPA_01001414 [Pseudomonas aeruginosa PACS2]
          Length = 452

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 25/193 (12%)

Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           TL YR     F Q NA +N  M    L+W LA T   +  +L+L+CG GNFSL LAR   
Sbjct: 275 TLAYR--PGDFVQVNAPVNESMIRQALDW-LAPTADER--VLDLFCGLGNFSLPLARRVA 329

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291
           RV+ VE     VE A  N  AN + N    +   SK   +A   E+ F            
Sbjct: 330 RVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAEQGFT----------- 378

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
              + +DPPR G  +A   M       ++Y+SCNP +L RD   ++   + ++R  + D 
Sbjct: 379 --AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 436

Query: 350 FPYTRHMECGVLL 362
           FP T H+E   L 
Sbjct: 437 FPQTAHVEAMALF 449


>gi|167039861|ref|YP_001662846.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
 gi|300915379|ref|ZP_07132693.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
 gi|307724814|ref|YP_003904565.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513]
 gi|166854101|gb|ABY92510.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514]
 gi|300888655|gb|EFK83803.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
 gi|307581875|gb|ADN55274.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513]
          Length = 452

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 31/236 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           RL   LH +           K  +   +DY+ E L      L ++    SF Q N+    
Sbjct: 237 RLVGVLHTQNDSWSDAVVCEKLNVLYGKDYLIEELL----GLKFKISAFSFFQTNS---- 288

Query: 197 HMLEWVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +  E +    +   GD+      +LY G G   +++A    +V+ +E+ + +V +AR N 
Sbjct: 289 YGAEKLYETVREFAGDVSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENA 348

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVG 310
             N + N   +           ++ +E   + D+         + VDPPRSG++  A   
Sbjct: 349 ELNGLKNCTFIA------GDVSKKLKEIKEMPDV---------VIVDPPRSGINPKALED 393

Query: 311 MVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  ++Y+SCNP+SL RDL I S   + ++++   D FP+T H+EC VL+ R
Sbjct: 394 IIKFNPQKVVYVSCNPESLARDLKIFSEGGYKVDKVKCVDMFPHTYHVECVVLMSR 449


>gi|309804713|ref|ZP_07698778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309808903|ref|ZP_07702784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 01V1-a]
 gi|325911406|ref|ZP_08173818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 143-D]
 gi|308166105|gb|EFO68323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308167901|gb|EFO70038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 01V1-a]
 gi|325476756|gb|EGC79910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 143-D]
          Length = 449

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
              E              +   IFVDPPR GL D  +   V   P  I+YISCNP ++ R
Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL I  +  +  + +   D FP T H+EC VLL +
Sbjct: 412 DLQIFQAAGYDFDCIDPVDMFPQTPHVECVVLLTK 446


>gi|15596130|ref|NP_249624.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           PAO1]
 gi|116048856|ref|YP_792343.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254239284|ref|ZP_04932607.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719]
 gi|296390713|ref|ZP_06880188.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           PAb1]
 gi|20140268|sp|Q9I525|RUMA_PSEAE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122257963|sp|Q02I93|RUMA_PSEAB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|9946837|gb|AAG04322.1|AE004527_9 probable RNA methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|115584077|gb|ABJ10092.1| probable RNA methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171215|gb|EAZ56726.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719]
          Length = 450

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 25/193 (12%)

Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           TL YR     F Q NA +N  M    L+W LA T   +  +L+L+CG GNFSL LAR   
Sbjct: 273 TLAYR--PGDFVQVNAPVNESMIRQALDW-LAPTADER--VLDLFCGLGNFSLPLARRVA 327

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291
           RV+ VE     VE A  N  AN + N    +   SK   +A   E+ F            
Sbjct: 328 RVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAEQGFT----------- 376

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
              + +DPPR G  +A   M       ++Y+SCNP +L RD   ++   + ++R  + D 
Sbjct: 377 --AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434

Query: 350 FPYTRHMECGVLL 362
           FP T H+E   L 
Sbjct: 435 FPQTAHVEAMALF 447


>gi|319892940|ref|YP_004149815.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162636|gb|ADV06179.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 454

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G  SL +A H   V  VE+   ++E A+ N   N +NN   V  ++++    
Sbjct: 311 VLDAYCGIGTISLFMAPHAQHVYGVEVVPEAIEDAKRNARYNQLNNTTFVAGAAEDVILK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
            +++              +   + VDPPR G D   +  + A     I+Y+SCNP +  R
Sbjct: 371 WQQD------------GIQPDVVTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +LS  + ++ +   D FP+T H+E   LLVRK
Sbjct: 419 DIEMLSAQYELKEMTPVDMFPHTTHVETVALLVRK 453


>gi|84390110|ref|ZP_00991372.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01]
 gi|84376764|gb|EAP93639.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01]
          Length = 439

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 158/378 (41%), Gaps = 60/378 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFD 64
           Y  Q+  K   L  +M  +Q  N ++   EPI      YR RA   ++ D      + F 
Sbjct: 98  YASQVEHKSQSLTHLMSQYQTANTEVV--EPIVGDETGYRRRARISLFVD-KKTQQLQFG 154

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS-------DQA 117
            + K+  +I+     ++L   L +       L P L++ L     LTS         D  
Sbjct: 155 FRKKQSKQIENITDCAVLDPRLNV-------LLPKLKSLLNTFSNLTSLGHVELVLGDTG 207

Query: 118 IVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            V ++ H + L +   +  I L  A  A  Y +    +    ++  D     E     G 
Sbjct: 208 PVMVLRHLKPLVEKDEQALIALAKAEGATLYTMPETDKI--VRLVGDAPAYSE----TGV 261

Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARH 230
           TL +    N F Q N  +N  M    +EW+       Q D  +L+L+CG GNFSL +A+ 
Sbjct: 262 TLPFE--PNHFIQVNQKVNQQMVAQAIEWLEP-----QADERVLDLFCGLGNFSLPIAQQ 314

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V+ VE     V+ A  N   N ++N         EF QA   E     L        
Sbjct: 315 SAFVVGVEGVDEMVQQATSNATLNQLSNT--------EFYQANLEE----ELSSQPWAKE 362

Query: 291 RFKTIFVDPPR---SGLDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLAL 346
           RF  I +DP R   SG+ D   G+      ++Y+SCNP +L RD  S+    + +++L +
Sbjct: 363 RFDKILLDPARAGASGIVDQISGL--GAKRVVYVSCNPATLARDSESLEKQGYQLDKLGM 420

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E   L ++
Sbjct: 421 LDMFPHTSHLESMALFIK 438


>gi|313105817|ref|ZP_07792080.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016]
 gi|310878582|gb|EFQ37176.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 450

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 25/193 (12%)

Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           TL YR     F Q NA +N  M    L+W LA T   +  +L+L+CG GNFSL LAR   
Sbjct: 273 TLAYR--PGDFVQVNAPVNESMIRQALDW-LAPTADER--VLDLFCGLGNFSLPLARRVA 327

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291
           RV+ VE     VE A  N  AN + N    +   SK   +A   E+ F            
Sbjct: 328 RVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAEQGFT----------- 376

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
              + +DPPR G  +A   M       ++Y+SCNP +L RD   ++   + ++R  + D 
Sbjct: 377 --AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434

Query: 350 FPYTRHMECGVLL 362
           FP T H+E   L 
Sbjct: 435 FPQTAHVEAMALF 447


>gi|309809377|ref|ZP_07703239.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308170288|gb|EFO72319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 449

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
              E              +   IFVDPPR GL D  +   V   P  I+YISCNP ++ R
Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL I  +  +  + +   D FP T H+EC VLL +
Sbjct: 412 DLQIFQAAGYDFDCIDPVDMFPQTPHVECVVLLTK 446


>gi|158521596|ref|YP_001529466.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158510422|gb|ABW67389.1| RNA methyltransferase, TrmA family [Desulfococcus oleovorans Hxd3]
          Length = 471

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 20/185 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           NSF Q N       L  V     G+ G   +++LYCG G  ++ L+     V+ +EI   
Sbjct: 302 NSFFQTNTR-GAERLYTVAREYAGLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDS 360

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            +  A  N   N+V+NV+ V    KE             L  +D    R   + +DPPR+
Sbjct: 361 CLADAVNNCRTNNVSNVRFVAGDVKE------------TLPRLDC---RADVLVIDPPRA 405

Query: 303 GLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           G+    V  V   A P I+Y+SCNP +L RD+++LS  +T+  +   D FP+T H+EC  
Sbjct: 406 GMHKDVVEQVLAMAPPRIVYVSCNPATLARDVAMLSEAYTVAEVQPVDMFPHTPHIECVA 465

Query: 361 LLVRK 365
            L +K
Sbjct: 466 RLDKK 470


>gi|284036603|ref|YP_003386533.1| RNA methyltransferase, TrmA family [Spirosoma linguale DSM 74]
 gi|283815896|gb|ADB37734.1| RNA methyltransferase, TrmA family [Spirosoma linguale DSM 74]
          Length = 476

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 102/206 (49%), Gaps = 20/206 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNG 221
           + Y++E++      L +R    SF Q NA    N++ +    A   G Q  + +LY G G
Sbjct: 287 KPYIEEQM----EALTFRIGPKSFYQTNAQQAYNLYKVAREFAGLTG-QERVYDLYTGTG 341

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L +AR    V+ VE  + SV  AR N   N + N   V    K    A+  +  F  
Sbjct: 342 TIALFVARLAKHVVGVEYVEASVADARVNAQVNGIANTTFVAGDMK----AILTDEFFAE 397

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
               D+       +  DPPR+G+D+A T  +++A P  I+Y+SCN  +  RDL+IL   +
Sbjct: 398 HGRPDV-------VITDPPRAGMDEAVTRQLLKAAPERIVYVSCNTATQARDLAILDEGY 450

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
           T+  +   D FP+T H+E  V+L ++
Sbjct: 451 TVTGVQPVDMFPHTHHVENVVVLTKR 476


>gi|195020688|ref|XP_001985248.1| GH16956 [Drosophila grimshawi]
 gi|193898730|gb|EDV97596.1| GH16956 [Drosophila grimshawi]
          Length = 613

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 21/195 (10%)

Query: 186 SFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F Q N AG NV   + +  A       +L++ CG G  +L  ARH  +VL VEI   ++
Sbjct: 386 AFFQINTAGANVLYQQAIDLAAPSKDTTMLDICCGTGTIALAFARHCKQVLGVEIVPDAI 445

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRS 302
           + A YN +AN + N K    ++ +F ++M RE  + +   K +D+         VDPPR+
Sbjct: 446 KDAEYNASANGITNCKFFAGNADDFIKSMVREALYGQEPGKPVDL------IAVVDPPRA 499

Query: 303 GLDDATVGMVQ---AYPHILYISCNPDSLCRDLSILSTTHTIE---------RLALFDQF 350
           GL + ++  ++   A   ++Y+SCNP S  R+   L+   + +              D F
Sbjct: 500 GLHNRSIAAIRSASAIKRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYSKSAVAVDMF 559

Query: 351 PYTRHMECGVLLVRK 365
           P+T H E  +L  R+
Sbjct: 560 PHTTHTELVILFERE 574


>gi|118443042|ref|YP_877382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
 gi|118133498|gb|ABK60542.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
          Length = 472

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L+++  +V  VEI   ++E A+ N   N+V+N + +   S+E    
Sbjct: 329 VFDAYCGTGTISLFLSKNAKKVYGVEIVDAAIENAKINAKENNVDNAEFIVGKSEEVIPN 388

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           +  +              +   + VDPPR G D A +  +       I+Y+SC+P +L R
Sbjct: 389 LINQ------------GIKADVVVVDPPRKGCDKALLDAIGNMKPDRIVYVSCDPGTLAR 436

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL+IL    +  + +   D FP T H+EC V L RK
Sbjct: 437 DLAILGELGYATKEVQPVDMFPQTGHVECVVKLERK 472


>gi|225848202|ref|YP_002728365.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643068|gb|ACN98118.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 420

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 174/378 (46%), Gaps = 67/378 (17%)

Query: 10  YEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           YE+Q+  K + L+  +L      +P  +++ S+P +YR++ +F    DG +     + Q 
Sbjct: 82  YEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQFKF--DGKNFG--FYRQN 137

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF-------QIDYLTSQSDQAIV 119
           + + + IDY          L+ E    I + PL +  LF       Q+   ++  +Q ++
Sbjct: 138 SNQVIDIDYCY--------LLKEDFNQI-IHPLKKF-LFKYALSPSQVIVFSNSKNQKLI 187

Query: 120 TLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
             ++      A     I + +D +      I+ IG  +K K          R  + G  +
Sbjct: 188 KFVFPDNSQIANIIPKIEIYKDEIDE---NIKGIGFYDKKK----------RQLLLGEYV 234

Query: 179 IYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLA 228
           I+  ++N        SF Q N     ++++ V+   K  +G    ++ YCG G FS+ LA
Sbjct: 235 IFETVDNYKYRVSMDSFFQVNIYQIKNLIDLVVQEVKD-KGYKRAVDFYCGVGTFSVPLA 293

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
            +   VL +E  + +V+ A+ N+  N++ N+K ++  ++   + ++  ++F         
Sbjct: 294 NYVREVLGIESNEEAVKDAKTNVRHNNLKNLKFLKAKTE---KGLKYAKDF--------- 341

Query: 289 SYRFKTIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDLSILST-THTIERL 344
             + + +  DPPRSGL+      +  +++   I+YISCNP +L RDL           ++
Sbjct: 342 --KPEVVVFDPPRSGLNKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKV 399

Query: 345 ALFDQFPYTRHMECGVLL 362
           ++ D FP T H+E  V+L
Sbjct: 400 SMVDMFPQTHHIESVVVL 417


>gi|145634669|ref|ZP_01790378.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           PittAA]
 gi|145268214|gb|EDK08209.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           PittAA]
          Length = 204

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 35  FIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 94

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N A N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 95  KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 141

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 142 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 201

Query: 363 VRK 365
             K
Sbjct: 202 TTK 204


>gi|163846809|ref|YP_001634853.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222524630|ref|YP_002569101.1| RNA methyltransferase, TrmA family [Chloroflexus sp. Y-400-fl]
 gi|163668098|gb|ABY34464.1| RNA methyltransferase, TrmA family [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448509|gb|ACM52775.1| RNA methyltransferase, TrmA family [Chloroflexus sp. Y-400-fl]
          Length = 416

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 18/183 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
           +I+R    SF Q N      M+  V  A     G LL+ Y G G+F+L LAR +D V+AV
Sbjct: 238 VIFRLSLGSFFQVNHAQAERMVAVVRDALAPHGGRLLDAYSGVGSFALPLARCYDEVIAV 297

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E  +P+VE  R +   N + NV+ +  +++     +               S  F  + +
Sbjct: 298 EAYQPAVEDGRQSAIDNQITNVQFINGAAEHTVAHL---------------SGPFHAVIL 342

Query: 298 DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTR 354
           DPPR G   A +  + A+  P I+YISC+P  + RDL+ +L+  + I  +   D FP T 
Sbjct: 343 DPPRRGCHPALIEAIIAHAPPQIVYISCHPGLIGRDLAPLLAAGYQITFVQPVDLFPQTP 402

Query: 355 HME 357
           H+E
Sbjct: 403 HIE 405


>gi|332532630|ref|ZP_08408506.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037846|gb|EGI74295.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 441

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 175/385 (45%), Gaps = 67/385 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLAF--------QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           +  QQ+ EK   + Q+   F        Q P L    S+P+HYR  A   +         
Sbjct: 96  EVSQQVVEKQTAVTQLFSKFAKLNSLNWQTPLL----SKPVHYRRSARIAV--------- 142

Query: 61  IMFDQQTKERMRIDYFMPGS---LLIN--ALMIEMMATI--RLEPLLR--AKLFQIDYLT 111
            MFD+  K +MR+ Y   GS   + IN  A++ E+   +    + L+     L  I +L 
Sbjct: 143 -MFDKAAK-KMRVGYRASGSKNIVSINKCAVLDEVFTDVFTLFDDLINQHKALHSISHLQ 200

Query: 112 -SQSDQAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-----CLDR 164
             QSD+    +I H + ++D  +     +      +  Q +++ ++    I      +  
Sbjct: 201 LCQSDKQNFVVIRHTKAINDDTKALVEHI-----TKSQQFEIVWQSESDAIEHSHLAMPF 255

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGN 222
            Y+ E        L +     +F Q NA +N  ML+   A    ++GD  LL+L+CG GN
Sbjct: 256 YYLKEF------DLKFEFGLGNFIQVNAQVNEAMLKQA-ANWLDLKGDENLLDLFCGIGN 308

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           FSLVLA+    V+ VE    +V  A  N   N + N    +    + TQ+++    F+  
Sbjct: 309 FSLVLAKQAKSVIGVEGVTSAVAMAAQNAQTNSITN---AQFHCFDLTQSIQSAPWFS-- 363

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILS-TTHT 340
           K++D+       + +DP R+G       + ++ +  ILY+SC+P +L RD +I+S     
Sbjct: 364 KNLDV-------LVLDPSRTGAMAVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFD 416

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           + ++ L + FP+T H+E   L  R+
Sbjct: 417 LNKIGLMNMFPHTGHIETMALFQRR 441


>gi|261418686|ref|YP_003252368.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|319765501|ref|YP_004131002.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
 gi|261375143|gb|ACX77886.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|317110367|gb|ADU92859.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
          Length = 462

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 165/387 (42%), Gaps = 55/387 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-PNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL  K + ++ ++      P +    I    P HYR + EF    +G    H    +
Sbjct: 97  YEGQLRHKTEHVKTLLKEHGFDPGVVRDTIGMEHPWHYRNKMEFTFSPEGLLGLH----E 152

Query: 66  QTKERMRIDY---FMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLT 111
           Q   R  I      + G  ++ A M E+    R            E LLR  + +  + T
Sbjct: 153 QGNFRQVISLETCLIAGEKIVKAAM-EVARWARDHQLPGYHKDTHEGLLRHVMVRESFAT 211

Query: 112 SQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
            +   A+  T      L +A  +   R+  AL   K  + L  RA       DR   ++ 
Sbjct: 212 GEVMVALFATEAPEGELKEAAADLTERITKALPEVKSLLWLENRA-----WADRTQAEQT 266

Query: 171 LTVAGRTLIY--------RQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
             +AGR  IY        R   ++F Q N      ++E  L          +++L+CG G
Sbjct: 267 HVLAGRDFIYDALCGFRYRLWFDTFFQTNPVQAAKLVELALEMGEPQPHEKMIDLFCGVG 326

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            FSL  A+    +  +EI + S+E+A+ N   N ++N   +              R+  R
Sbjct: 327 TFSLPFAKRVKELAGIEIVETSIESAKRNAKDNGIDNTYFL-------------ARDARR 373

Query: 282 LKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS-ILST 337
             D  +  + R + + +DPPRSG     +  + +A P  ++Y+SCNP++   D++ ++  
Sbjct: 374 GIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFASDITELVPF 433

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +T+E +   D FP+T H+EC  LLVR
Sbjct: 434 GYTLETVQPVDMFPHTAHVECCALLVR 460


>gi|317491024|ref|ZP_07949460.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920571|gb|EFV41894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 438

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 120/264 (45%), Gaps = 42/264 (15%)

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDY--VDE 169
           Q+D   V ++ H  L+    +   RL D        + L G   +  K+C +  +  VDE
Sbjct: 202 QADNGCVLVLRH--LEALKEQDLARLHDFGAQHDVMVYLQGNEGELVKLCGESPFYQVDE 259

Query: 170 -RLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFS 224
            RL  + R          F Q N  IN  M    LEW+   +      +L+L+CG GNF+
Sbjct: 260 LRLFFSPR---------DFIQVNDAINQQMVAQALEWLDVQSTD---RVLDLFCGMGNFT 307

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA+   +V+ VE     VE   YN   N +NNV        EF Q        N   D
Sbjct: 308 LPLAKRAKQVVGVEGVATLVENGLYNAHINALNNV--------EFFQ-------HNLEDD 352

Query: 285 IDIHSYR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTH 339
           +    +    F+ + +DP R+G       +V+  P  ++Y+SCNP +L RD  +L +  +
Sbjct: 353 VTRQPWAKLGFEKVLLDPARAGAAGVMTHIVKLAPEKVVYVSCNPTTLARDSKVLIAAGY 412

Query: 340 TIERLALFDQFPYTRHMECGVLLV 363
            +ER+ + D FP+T H+E   L V
Sbjct: 413 RMERVRMLDMFPHTGHLESMALFV 436


>gi|143811454|sp|Q5E320|RUMA_VIBF1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 438

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 157/362 (43%), Gaps = 26/362 (7%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Q+E+Q+  K ++L+++M    V     +Q    E + YR RA   +  +      + F  
Sbjct: 97  QHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLMLN-KQTNQLDFGF 155

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + K+   I       +L+  L   + +   L   L+ K         Q+D   V LI H 
Sbjct: 156 RKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKHLGHVELVQADNGSVLLIRH- 214

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            + D   +    L +    R   + L+  A+     L+    +E   +   T IY   ++
Sbjct: 215 -VADFNEKDQQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTKIYFTPKD 269

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q N  +N  M+E  L+     + D +L+L+CG GNFSL LA+    V+ +E     V
Sbjct: 270 -FIQVNRNVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGIEGVDEMV 328

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N   N ++NV         F QA   E     + +    S +F  I +DP R+G 
Sbjct: 329 QRAKLNAERNQLSNV--------SFYQANLEE----EVSEQVWASTKFTKILLDPARAGA 376

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
                 + +  P  ++Y+SCNP +L RD  +L      + RL + D FP+T H+E   L 
Sbjct: 377 AGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGHLESMALF 436

Query: 363 VR 364
            R
Sbjct: 437 ER 438


>gi|119944302|ref|YP_941982.1| RNA methyltransferase, TrmA family protein [Psychromonas ingrahamii
           37]
 gi|143581743|sp|A1SSB8|RUMA_PSYIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|119862906|gb|ABM02383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychromonas
           ingrahamii 37]
          Length = 444

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 24/185 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N+ IN  M    ++W LA  K     +L+L+CG GNF+L +AR  + V+ +E  + 
Sbjct: 275 FLQVNSDINKKMVSQAMQW-LALEKN--DSVLDLFCGLGNFTLPIARQVESVVGIEGVQQ 331

Query: 243 SVEAARYNIAANHVNNVKIVR--MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            V+ A  N   N++ N +  +  +S +   +     + FN+             + +DP 
Sbjct: 332 MVDRATANAQLNNLQNARFYQADLSGENLIEQEWANQNFNK-------------VLLDPA 378

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358
           R+G  D    + Q  P HILY+SC+P +L RD  + L   + +++L L D FP T HME 
Sbjct: 379 RAGALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDKGYKLDKLGLLDMFPQTAHMES 438

Query: 359 GVLLV 363
             L  
Sbjct: 439 MALFT 443


>gi|269140060|ref|YP_003296761.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267985721|gb|ACY85550.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304559888|gb|ADM42552.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Edwardsiella tarda
           FL6-60]
          Length = 420

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 23/178 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           F Q NA +N  M+E  LA    ++ D  +L+L+CG GNF+L LAR   RV+ VE     V
Sbjct: 249 FIQVNAAVNAQMVEQALAWLD-VRADERVLDLFCGMGNFTLPLARRAQRVVGVEGVPELV 307

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPR 301
             A+ N   N ++NV+    + +E               D+   ++    F  I +DP R
Sbjct: 308 ATAQNNARNNGLSNVEFFHQNLEE---------------DVTRQAWAAQGFDKILLDPAR 352

Query: 302 SGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
           +G       +V   P  ++Y+SCNP +L RD  ++L   + + RL + D FP+T H+E
Sbjct: 353 AGAPGVMQHIVCLAPRRVVYVSCNPTTLARDSKTLLQGGYRLTRLCMLDMFPHTGHLE 410


>gi|256839936|ref|ZP_05545445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
           D13]
 gi|256738866|gb|EEU52191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
           D13]
          Length = 470

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 26/218 (11%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD 212
           C D     E L   G+  I  ++E         SF Q N+    + L  V     G+ G+
Sbjct: 266 CNDTITDQEVLVFKGKDHIIEEMEGLQFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGN 324

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-F 269
             + +LY G G  +  ++R   +V+ +E    ++E A+ N A NH+ N        K+  
Sbjct: 325 EMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNHIENTLFYAGDMKDIL 384

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDS 327
           TQ             I+ H  R   I  DPPR+G+ DD    ++ A P  I+Y+SCNP +
Sbjct: 385 TQDF-----------INQHG-RPDVIITDPPRAGMHDDVINTILFAEPERIVYVSCNPAT 432

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDLS+LS  ++++++   D FP+T H+E  VLL +K
Sbjct: 433 QARDLSLLSVKYSVKKVRPVDMFPHTHHVENVVLLEKK 470


>gi|282600209|ref|ZP_05973425.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia
           rustigianii DSM 4541]
 gi|282566270|gb|EFB71805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia
           rustigianii DSM 4541]
          Length = 427

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 19/188 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F Q N  IN  M+   +A       D +L+L+CG GNF+L +AR    V+ VE  +  V
Sbjct: 254 NFIQVNGEINQQMVAQAIAWLDISPEDRVLDLFCGMGNFTLPIARIAKSVVGVEGVENLV 313

Query: 245 EAARYNIAANHVNNVKIVRMSSKE--FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
             AR N   N +NN      + +E   TQ   ++               F  + +DP R+
Sbjct: 314 SQARSNAQLNSINNASFYNANLEEQIHTQPWAQQ--------------GFNKVLLDPARA 359

Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360
           G       + +  P  I+Y+SCNP +L RD  + L   + + +L + D FP+T H+E   
Sbjct: 360 GAAGVMEHLTKLMPEKIVYVSCNPTTLARDSKVLLEGGYQLHQLRMLDMFPHTSHLESMA 419

Query: 361 LLVRKPSG 368
           L +R P G
Sbjct: 420 LFIRSPEG 427


>gi|150007675|ref|YP_001302418.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|255013620|ref|ZP_05285746.1| RNA methyltransferase [Bacteroides sp. 2_1_7]
 gi|262381816|ref|ZP_06074954.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_33B]
 gi|298375621|ref|ZP_06985578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_19]
 gi|301310290|ref|ZP_07216229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3]
 gi|149936099|gb|ABR42796.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|262296993|gb|EEY84923.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_33B]
 gi|298268121|gb|EFI09777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_19]
 gi|300831864|gb|EFK62495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3]
          Length = 470

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 26/218 (11%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD 212
           C D     E L   G+  I  ++E         SF Q N+    + L  V     G+ G+
Sbjct: 266 CNDTITDQEVLVFKGKDHIIEEMEGLQFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGN 324

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-F 269
             + +LY G G  +  ++R   +V+ +E    ++E A+ N A NH+ N        K+  
Sbjct: 325 EMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNHIENTLFYAGDMKDIL 384

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDS 327
           TQ             I+ H  R   I  DPPR+G+ DD    ++ A P  I+Y+SCNP +
Sbjct: 385 TQDF-----------INQHG-RPDVIITDPPRAGMHDDVINTILFAEPERIVYVSCNPAT 432

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDLS+LS  ++++++   D FP+T H+E  VLL +K
Sbjct: 433 QARDLSLLSVKYSVKKVRPVDMFPHTHHVENVVLLEKK 470


>gi|146312878|ref|YP_001177952.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter sp. 638]
 gi|226725379|sp|A4WDX1|RUMA_ENT38 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|145319754|gb|ABP61901.1| 23S rRNA m(5)U-1939 methyltransferase [Enterobacter sp. 638]
          Length = 431

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 27/185 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q N G+N  M    +EW+      +Q D  +L+L+CG GNF+L LA+    V+ VE  
Sbjct: 263 FIQVNDGVNQQMVAKAIEWL-----DVQPDDRVLDLFCGMGNFTLPLAQRAASVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              VE  + N   N ++NV     + +E  TQ    +  F++             + +DP
Sbjct: 318 NALVEKGQQNAHHNALDNVTFFHENLEEDVTQQPWAQHGFDK-------------VLLDP 364

Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  ++Y+SCNP +L RD  ++LS  + I+RLA+ D FP+T H+E
Sbjct: 365 ARAGAPGVMQHIIKLAPKRVVYVSCNPATLARDSEALLSAGYQIQRLAMLDMFPHTGHLE 424

Query: 358 CGVLL 362
             VL 
Sbjct: 425 SMVLF 429


>gi|310766625|gb|ADP11575.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia sp. Ejp617]
          Length = 438

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 21/185 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   LA       D +L+LYCG GNF+L + +    V+ VE     V 
Sbjct: 269 FIQVNDEVNQQMVARALAWLDLQPEDRVLDLYCGMGNFTLPMGKFAKNVVGVEGVAALVA 328

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
            A YN   N++NNV   + + +E               D+    +    F  + +DP R+
Sbjct: 329 KAGYNAELNNLNNVTYWQHNLEE---------------DVSRQPWAAQGFNKVLLDPARA 373

Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGV 360
           G       + +  P  ++Y+SCNP +L RD  IL T+ + +ER+ + D FP+T H+E  V
Sbjct: 374 GAAGVMAHITKLAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMV 433

Query: 361 LLVRK 365
           L  RK
Sbjct: 434 LFSRK 438


>gi|222151872|ref|YP_002561032.1| RNA methyltransferase, TrmA family protein homolog [Macrococcus
           caseolyticus JCSC5402]
 gi|222121001|dbj|BAH18336.1| RNA methyltransferase, TrmA family protein homolog [Macrococcus
           caseolyticus JCSC5402]
          Length = 454

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           L +R   NSF Q N      ++ L    A  KG +  +L+ YCG G  SL LA+H ++V 
Sbjct: 276 LEFRVSPNSFFQVNTPQAETLYKLALEAANLKGHE-TVLDAYCGIGTISLALAQHAEQVY 334

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           A+EI   S++ A+ N   N ++NV     S+ E       +               F   
Sbjct: 335 AMEIVHESIKMAKQNAKMNGIDNVHFETGSADEILPKWSEQ------------GVNFDVA 382

Query: 296 FVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            VDPPR GLDD  +  +  Q+   I+Y+SCNP +  RD        + +E +   D FP 
Sbjct: 383 VVDPPRKGLDDDFIQTLINQSPKTIVYVSCNPGTCARDCRKFADAGYKLEYVKPVDLFPQ 442

Query: 353 TRHMECGVLLVR 364
           T H+EC V L +
Sbjct: 443 TPHVECVVKLTK 454


>gi|145631421|ref|ZP_01787191.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           R3021]
 gi|144982958|gb|EDJ90467.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           R3021]
          Length = 438

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNRALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N A N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|47169345|pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
           Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
           Methyltransferase
          Length = 433

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NAG+N       LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNAGVNQKXVARALEWLDVQP---EDRVLDLFCGXGNFTLPLATQAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  + N   N + NV     + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA  D FP+T H+E
Sbjct: 365 ARAGAAGVXQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAXLDXFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SXVLFSR 431


>gi|59712688|ref|YP_205464.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio fischeri ES114]
 gi|59480789|gb|AAW86576.1| 23S rRNA (uracil-5)-methyltransferase [Vibrio fischeri ES114]
          Length = 449

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 157/362 (43%), Gaps = 26/362 (7%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Q+E+Q+  K ++L+++M    V     +Q    E + YR RA   +  +      + F  
Sbjct: 108 QHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLMLN-KQTNQLDFGF 166

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + K+   I       +L+  L   + +   L   L+ K         Q+D   V LI H 
Sbjct: 167 RKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKHLGHVELVQADNGSVLLIRH- 225

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            + D   +    L +    R   + L+  A+     L+    +E   +   T IY   ++
Sbjct: 226 -VADFNEKDQQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTKIYFTPKD 280

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q N  +N  M+E  L+     + D +L+L+CG GNFSL LA+    V+ +E     V
Sbjct: 281 -FIQVNRNVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGIEGVDEMV 339

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N   N ++NV         F QA   E     + +    S +F  I +DP R+G 
Sbjct: 340 QRAKLNAERNQLSNV--------SFYQANLEE----EVSEQVWASTKFTKILLDPARAGA 387

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
                 + +  P  ++Y+SCNP +L RD  +L      + RL + D FP+T H+E   L 
Sbjct: 388 AGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGHLESMALF 447

Query: 363 VR 364
            R
Sbjct: 448 ER 449


>gi|256822067|ref|YP_003146030.1| TrmA family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256795606|gb|ACV26262.1| RNA methyltransferase, TrmA family [Kangiella koreensis DSM 16069]
          Length = 448

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 19/205 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           RD++  RL      +++  ++  FTQ N  IN  M++  +   +    D +L+L+CG GN
Sbjct: 258 RDWLSYRLEDYDVEMLFHPMD--FTQVNDSINSKMVKRAIEWLEPKADDRILDLFCGLGN 315

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNR 281
           F++ LA     V+ VE ++  V+  + N   N ++NV+    +   +FTQ    ++ FN+
Sbjct: 316 FTIPLATQVQNVVGVEGSEAMVKRGQMNAKHNGLSNVEFYATNLQDDFTQEEWAQQGFNK 375

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTH 339
                        I +DPPRSG  D    + +  P  I+Y+SCNP +L RD   L    +
Sbjct: 376 -------------ILIDPPRSGALDVVQNITRFNPERIVYVSCNPATLARDAGELKEKGY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            + +  + D FP+T H E   L  R
Sbjct: 423 KLVKAGVMDMFPHTSHTESIALFER 447


>gi|16272285|ref|NP_438497.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae
           Rd KW20]
 gi|260581201|ref|ZP_05849020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           RdAW]
 gi|1723812|sp|P44643|RUMA_HAEIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|1573302|gb|AAC21995.1| RNA methyltransferase, putative [Haemophilus influenzae Rd KW20]
 gi|260092126|gb|EEW76070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           RdAW]
          Length = 438

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N   N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCNFGYKIEKSAVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|269792573|ref|YP_003317477.1| RNA methyltransferase, TrmA family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100208|gb|ACZ19195.1| RNA methyltransferase, TrmA family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 457

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 18/156 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           D+LELY G G+ + ++A    RV+AVE    +VE  R N+  N ++ V  +  ++++   
Sbjct: 314 DVLELYSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHGVTPLLGAAEDV-- 371

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA-YPHILYISCNPDSLC 329
                     L D+      F+ + +DPPR G     +  MV A  PH++Y+SCNP +L 
Sbjct: 372 ----------LGDL---GGDFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATLA 418

Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL +LS   + + R+  FD FP T H+EC  L+ R
Sbjct: 419 RDLMLLSQGGYVLRRVRPFDMFPQTCHVECVTLMSR 454


>gi|50086080|ref|YP_047590.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter sp. ADP1]
 gi|90126208|sp|Q6F847|RUMA_ACIAD RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|49532056|emb|CAG69768.1| 23S rRNA (Uracil-5-)-methyltransferase(23S
           rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp.
           ADP1]
          Length = 463

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 28/233 (12%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERL--TVAGRTLIYRQIENSFTQPNAGI 194
           +L D    + +Q+ L  + + +   +DR   + RL   V    L +      FTQ NA +
Sbjct: 234 QLCDYAQHKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATV 293

Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYN 250
           N  ML+      K  +G+ +L+L+CG GNFSL LAR      RV+ VE ++  V+ A  N
Sbjct: 294 NQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFEN 353

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRSGLDDA 307
            A N ++NV+     S++ T            KD   HS+    F  + +DPPRSG  + 
Sbjct: 354 AAQNALHNVEFY---SQDLT------------KDFSHHSWANQGFDALLIDPPRSGAFEI 398

Query: 308 T--VGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
              +   +A   I+Y+SCNP +L RD  +L+   + ++++ + D F +T H+E
Sbjct: 399 MHYIANFEA-KRIVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHVE 450


>gi|117618818|ref|YP_855360.1| 23S rRNA 5-methyluridine methyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|143580479|sp|A0KGG9|RUMA_AERHH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|117560225|gb|ABK37173.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 440

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 15/184 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q NA +N  M+E  L+  +  + D +L+L+CG GNF+L LAR    V+ VE     
Sbjct: 269 GDFIQVNAPVNQRMVEQALSWLEAGKDDKVLDLFCGIGNFTLPLARQAREVVGVEGELAM 328

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A  N   N +NN +  +         M   RE             F  + +DP R G
Sbjct: 329 VARAEENARRNGINNARFYKADLGGDIAGMSWARE------------GFDLVLLDPARPG 376

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
             +    +V+  P  ++Y+SCNP +L RD  +L    + + RL + D FP+T H+E   L
Sbjct: 377 AFEVMEHVVKLSPRRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLESMAL 436

Query: 362 LVRK 365
             RK
Sbjct: 437 FERK 440


>gi|254172832|ref|ZP_04879506.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
 gi|214032988|gb|EEB73816.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
          Length = 418

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 89/184 (48%), Gaps = 24/184 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N+   V +L  V     G +  +L+LY G G F + LA+   RV  +EI   +V
Sbjct: 256 NSFFQTNSYGAVELLREVAKRVDGER--VLDLYSGVGTFGVYLAKRGFRVEGIEINPFAV 313

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-FKTIFVDPPRSG 303
           + A  N   N VN                     F    D D+ S R + T+ VDPPR+G
Sbjct: 314 KMANRNAELNGVNA-------------------SFRVGADRDVESLRAYDTVIVDPPRAG 354

Query: 304 LDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L    V  +VQ  P  ++Y+SCNP +L RDL  L   +T+  +   D FP+T H+E  V 
Sbjct: 355 LHPKLVERLVQNGPEQLVYVSCNPKTLARDLDKLKRVYTVSDIIGLDMFPHTPHVEAVVE 414

Query: 362 LVRK 365
           L R+
Sbjct: 415 LKRQ 418


>gi|86158782|ref|YP_465567.1| (Uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775293|gb|ABC82130.1| 23S rRNA m(5)U-1939 methyltransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 438

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 145/362 (40%), Gaps = 31/362 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           E+ L E + R+ ++          +    P+ YR RA+FH  HD      + F +++ E 
Sbjct: 100 ERALHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HDRAAGRLVFFRRRSHEP 157

Query: 71  MRI---DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +R+       PG   +   +   +A  RL P    +   +++  +    A   L+     
Sbjct: 158 VRLRECHLLEPGLDALREAVGPALAAARLSP----REVALEWSEAAGRGAAWLLLPEVTS 213

Query: 128 DDAWR-ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR--TLIYRQIE 184
               R E  +R   AL        L+ +A   +     D V       GR      R   
Sbjct: 214 PVRTRAEALLREVPALQG------LVLQAEGGQPVTAGDPVLRHARAPGRPEAGTQRSRP 267

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           + F Q N G N  ++E  L        D+LELYCG GNF+  L+     V A+E+  P++
Sbjct: 268 DVFQQANRGANARLVETALDLLAPEGEDVLELYCGAGNFTGPLSDRARSVSAIEVQGPAL 327

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + AR ++      NV+     +    +A  RE            + RF    +DPPR G 
Sbjct: 328 DLARADLGG---RNVRFFAGDALALARAFGRESGPG--------ARRFGAALLDPPREGA 376

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362
                 +     P  +Y+SC+P +  RDL + +   + +  +   D FP T H+E   LL
Sbjct: 377 RGIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMFPQTHHVEGVALL 436

Query: 363 VR 364
            R
Sbjct: 437 ER 438


>gi|150021420|ref|YP_001306774.1| RNA methyltransferase [Thermosipho melanesiensis BI429]
 gi|149793941|gb|ABR31389.1| RNA methyltransferase, TrmA family [Thermosipho melanesiensis
           BI429]
          Length = 435

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 20/184 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N  +   M+++ L     + G+  +L+L+ G G FS+ LA     V+AV     S
Sbjct: 268 AFFQNNFYVTEKMIDY-LTKNLDLNGNEVVLDLFSGLGTFSIRLALLSKFVVAVGSNHVS 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+A R N   N + N+K +   + EF +        N  K+ D+       + VDPPRSG
Sbjct: 327 VKAGRANANINGLRNIKFIESDAYEFLK--------NSEKNFDV-------LVVDPPRSG 371

Query: 304 LDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L        +++    I Y+SCNP +  RDL +L   + I+ + LFD FP T H+E   +
Sbjct: 372 LGKEMCNEILLRKPEKIAYVSCNPSTFSRDLKMLMELYEIKSIKLFDMFPQTYHIESIAI 431

Query: 362 LVRK 365
           L RK
Sbjct: 432 LARK 435


>gi|319647052|ref|ZP_08001278.1| YefA protein [Bacillus sp. BT1B_CT2]
 gi|317390876|gb|EFV71677.1| YefA protein [Bacillus sp. BT1B_CT2]
          Length = 458

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N + N +       E    
Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAE---FEVGEAEVV 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           + +  E     D         T+ VDPPR G D+A +  +++  P  ++Y+SCNP +L R
Sbjct: 372 IPKWYEEGIAAD---------TLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLAR 422

Query: 331 DLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
           DL +L     + R +   D FP+T H+EC VLLV+K
Sbjct: 423 DLRVLEDGGYVTREVQPVDMFPHTAHVECCVLLVKK 458


>gi|258626910|ref|ZP_05721714.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM603]
 gi|258580833|gb|EEW05778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM603]
          Length = 265

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 21/189 (11%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           + N F Q N  +N  M+E  L   +  + D +L+L+CG GNF+L LA+    V+ VE  +
Sbjct: 91  LPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQEVVGVEGVE 150

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVD 298
             V+ A +N   N +NNV         F QA       N  +D+   S+   +F  + +D
Sbjct: 151 EMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTNASWAQQKFAKVLLD 195

Query: 299 PPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+T H+
Sbjct: 196 PARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHL 255

Query: 357 ECGVLLVRK 365
           E   L V+K
Sbjct: 256 ESMALFVKK 264


>gi|262166494|ref|ZP_06034231.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus VM223]
 gi|262026210|gb|EEY44878.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus VM223]
          Length = 440

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 21/189 (11%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           + N F Q N  +N  M+E  L   +  + D +L+L+CG GNF+L LA+    V+ VE  +
Sbjct: 266 LPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQEVVGVEGVE 325

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVD 298
             V+ A +N   N +NNV         F QA       N  +D+   S+   +F  + +D
Sbjct: 326 EMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTNASWAQQKFAKVLLD 370

Query: 299 PPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHM 356
           P R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+T H+
Sbjct: 371 PARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHL 430

Query: 357 ECGVLLVRK 365
           E   L V+K
Sbjct: 431 ESMALFVKK 439


>gi|114320510|ref|YP_742193.1| 23S rRNA 5-methyluridine methyltransferase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122311777|sp|Q0A8Y4|RUMA_ALHEH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|114226904|gb|ABI56703.1| 23S rRNA m(5)U-1939 methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 445

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 105/222 (47%), Gaps = 28/222 (12%)

Query: 155 ANKTKICLDRDYVDERLTVA----GRTLIYRQIENSFTQPNAGINVHMLEW---VLAATK 207
            N+  + L  D V  RL  A    G  L +R     FTQ NA IN  M++    +LA   
Sbjct: 238 GNEATMALVHDPVGRRLDYALPGHGVRLGFRP--GDFTQVNAEINRAMVDQALDLLAVEP 295

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G +  +L+L+CG GNF+L LAR    V+ VE A+  VE  R N   N ++N   VR    
Sbjct: 296 GQR--VLDLFCGLGNFTLPLARRASEVVGVEGAEALVERGRENALRNGLDN---VRFYGA 350

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325
           + T A           D    +  F  + +DPPRSG  +  +G+V A     I+Y+SC P
Sbjct: 351 DLTLAA---------ADQPWATGGFDRVLLDPPRSGAFE-VLGLVAALGPKRIVYVSCGP 400

Query: 326 DSLCRDLSILSTTHT--IERLALFDQFPYTRHMECGVLLVRK 365
            +L RD   L   H   +    + D FP+T H+E   +  R+
Sbjct: 401 ATLARDAGELVHRHGYRLTAAGVMDMFPHTAHVESMAVFQRE 442


>gi|269960399|ref|ZP_06174772.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834826|gb|EEZ88912.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 436

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 167/377 (44%), Gaps = 62/377 (16%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y+QQL  K   LRQ+M  F   ++++      E + YR RA   ++ D      + F  +
Sbjct: 98  YDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156

Query: 67  TKERMRIDYFMPGSLL---INALMIEMMATIRL--EPLLRAKLFQIDYLTSQSDQAIVTL 121
            K+  +I       +L   +N L+ E+ +T++   +P    +L  ++ +   +   I   
Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKKP---EQLGHVELVLGDNGPCITLR 213

Query: 122 IYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV---AG 175
              +L +   ++  E A R   +L+      QL             D ++  +     AG
Sbjct: 214 HLSKLTEKETNSLLELAKRHNASLYLMPETDQL-------------DLIEGEVPFYQEAG 260

Query: 176 RTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
            T+ +    N+F Q N  +N  M+    EW+       Q D  +L+L+CG GNFSL +A+
Sbjct: 261 VTVPF--TPNNFIQVNQAVNQKMVAQAVEWL-----DPQSDERVLDLFCGLGNFSLPIAK 313

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIH 288
               V+ VE     VE A  N + N +NN +    +  ++F   +    +F++       
Sbjct: 314 RAKHVVGVEGVAEMVEKAANNASLNQINNAQFYHANLEQDFEGQVWAAEQFDK------- 366

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD-LSILSTTHTIERLA 345
                 + +DP R+G     +  V A     ++Y+SCNP +L RD  S+L   + + +L 
Sbjct: 367 ------VLLDPARAGA-SGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLG 419

Query: 346 LFDQFPYTRHMECGVLL 362
           + D FP+T H+E   L+
Sbjct: 420 MLDMFPHTSHLESMALV 436


>gi|322807179|emb|CBZ04753.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402
           065]
          Length = 453

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 31/234 (13%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           EC   ++  LH     +  + + +K +I   RDY+ E L      L ++    +F Q N+
Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289

Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  E + +  K   GD     + +LYCG G    ++A    +V+ VE+ + +V+AA
Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 345

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N +NN + +     +  + ++++ +                I +DPPR G+   
Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358
            +  V  +    I+Y+SCNP +L  DL  ++   + +E++   D FP+T H EC
Sbjct: 391 ALEYVVKFQPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHTEC 444


>gi|121533508|ref|ZP_01665336.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans
           Nor1]
 gi|121308067|gb|EAX48981.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans
           Nor1]
          Length = 462

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 22/218 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD 212
             +T +   ++ + +RL       +++    SF Q N    V +    +  A   G++  
Sbjct: 261 GEETSVIWGKETITDRLG----GFVFQISARSFFQVNTEQTVRLYNKAVEYAGLTGVE-T 315

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            ++ YCG G  +L LA+   +V  +E+ +P+V  A  N   N V+NV  +   + +    
Sbjct: 316 AIDAYCGTGTITLFLAKRAAKVYGIEVVEPAVRDAWLNARRNGVDNVDFIVGDAVDVMPK 375

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
           + +               R + I VDPPR+G D   +   V+  P  I+Y+SCNP SL R
Sbjct: 376 LYKS------------GVRPQAIVVDPPRAGCDRRVLETFVRMQPDRIVYVSCNPASLAR 423

Query: 331 DLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRKPS 367
           DL++L+    + R +   D FP T H+EC V L RK S
Sbjct: 424 DLAVLAECGYMTREIQPVDMFPQTSHIECVVSLKRKHS 461


>gi|188534844|ref|YP_001908641.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia tasmaniensis
           Et1/99]
 gi|226725381|sp|B2VFZ2|RUMA_ERWT9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|188029886|emb|CAO97770.1| 23S rRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 438

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 21/185 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   LA       D +L+L+CG GNF+L + +    V+ VE     V 
Sbjct: 269 FIQVNDDVNQQMVARALAWLDLQPEDRVLDLFCGMGNFTLPMGKFAKNVVGVEGVAALVA 328

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
            A YN   N +NNV   + + +E               D+    +    F  + +DP R+
Sbjct: 329 KAGYNAELNCLNNVAFWQHNLEE---------------DVSRQPWAVEGFNKVLLDPARA 373

Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGV 360
           G       +++  P  ++Y+SCNP +L RD  IL T+ + +ER+ + D FP+T H+E  V
Sbjct: 374 GAAGVMAHIIKIAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMV 433

Query: 361 LLVRK 365
           L  RK
Sbjct: 434 LFSRK 438


>gi|170765935|ref|ZP_02900746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii
           TW07627]
 gi|170125081|gb|EDS94012.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii
           TW07627]
          Length = 433

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 31/189 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q NAG+N  M    LEW+      +Q D  +L+L+CG GNF+L +A     V+ VE  
Sbjct: 263 FIQVNAGVNQKMVAQALEWL-----DVQPDDRVLDLFCGMGNFTLPVATRAASVVGVEGV 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              VE  + N   N ++NV     + ++               D+    +    F  + +
Sbjct: 318 PALVEKGQENARLNGLHNVTFYHENLED---------------DVTKQPWAKNGFDKVLL 362

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           DP R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H
Sbjct: 363 DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGH 422

Query: 356 MECGVLLVR 364
           +E  VL  R
Sbjct: 423 LESMVLFSR 431


>gi|218893098|ref|YP_002441967.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           LESB58]
 gi|218773326|emb|CAW29138.1| probable RNA methyltransferase [Pseudomonas aeruginosa LESB58]
          Length = 450

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 91/193 (47%), Gaps = 25/193 (12%)

Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           TL YR     F Q NA +N  M    L+W LA T   +  +L+L+CG GNFSL LAR   
Sbjct: 273 TLAYR--PGDFVQVNAPMNESMIRQALDW-LAPTADER--VLDLFCGLGNFSLPLARRVA 327

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291
           RV+ VE     VE A  N  AN + N    +   SK   +A   E+ F            
Sbjct: 328 RVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAEQGFT----------- 376

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
              + +DPPR G  +A   M       ++Y+SCNP +L RD   ++   + ++R  + D 
Sbjct: 377 --AVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434

Query: 350 FPYTRHMECGVLL 362
           FP T H+E   L 
Sbjct: 435 FPQTAHVEAMALF 447


>gi|194439665|ref|ZP_03071736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           101-1]
 gi|253772364|ref|YP_003035195.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162711|ref|YP_003045819.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli B str.
           REL606]
 gi|297518509|ref|ZP_06936895.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli OP50]
 gi|300931243|ref|ZP_07146583.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           187-1]
 gi|194421412|gb|EDX37428.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           101-1]
 gi|242378332|emb|CAQ33109.1| 23S rRNA m[5]U1939 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323408|gb|ACT28010.1| RNA methyltransferase, TrmA family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974612|gb|ACT40283.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253978777|gb|ACT44447.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli BL21(DE3)]
 gi|300460897|gb|EFK24390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           187-1]
 gi|323960697|gb|EGB56321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H489]
          Length = 433

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 21/184 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q NAG+N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE
Sbjct: 263 FIQVNAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
             + N   N + NV     + +E               D+    +    F  + +DP R+
Sbjct: 323 KGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDPARA 367

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
           G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E  V
Sbjct: 368 GAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427

Query: 361 LLVR 364
           L  R
Sbjct: 428 LFSR 431


>gi|328957913|ref|YP_004375299.1| putative RNA methyltransferase [Carnobacterium sp. 17-4]
 gi|328674237|gb|AEB30283.1| putative RNA methyltransferase [Carnobacterium sp. 17-4]
          Length = 458

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G  +L LA++   V  +EI +P+VE A+ N   N++ NV     +++E    
Sbjct: 315 VIDAYSGIGTITLTLAKNAKHVYGIEIIEPAVENAKANAELNNIENVTFEAGAAEE---V 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCR 330
           M +  E  R  D+         + VDPPR GL+ + T  ++   P  ++Y+SCNP +L R
Sbjct: 372 MVQWSEEGRTADL---------LVVDPPRKGLEKEFTEAVIAMKPTKMVYVSCNPATLAR 422

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL++L+   +T++++   D FP T H+E   LLVR
Sbjct: 423 DLALLTEGGYTVKKVQPVDLFPQTTHVESVTLLVR 457


>gi|153939426|ref|YP_001392140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. Langeland]
 gi|152935322|gb|ABS40820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. Langeland]
 gi|295320145|gb|ADG00523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. 230613]
          Length = 453

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 31/234 (13%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           EC   ++  LH     +  + + +K +I   RDY+ E L      L ++    +F Q N+
Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289

Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  E + +  K   GD     + +LYCG G    ++A    +V+ VE+ + +V+AA
Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 345

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N +NN + +     +  + ++++ +                I +DPPR G+   
Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358
            +  V  +    I+Y+SCNP +L  DL  ++   + +E++   D FP+T H EC
Sbjct: 391 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHTEC 444


>gi|329123639|ref|ZP_08252199.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC
           11116]
 gi|327469838|gb|EGF15303.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC
           11116]
          Length = 438

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N   N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|323971613|gb|EGB66844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA007]
          Length = 433

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 21/184 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q NAG+N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE
Sbjct: 263 FIQVNAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
             + N   N + NV     + +E               D+    +    F  + +DP R+
Sbjct: 323 KGQQNARLNGLQNVTFYHENLEE---------------DVTKQPWAKNGFDKVLLDPARA 367

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
           G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E  V
Sbjct: 368 GAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMV 427

Query: 361 LLVR 364
           L  R
Sbjct: 428 LFSR 431


>gi|260582573|ref|ZP_05850363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           NT127]
 gi|260094384|gb|EEW78282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           NT127]
          Length = 438

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N   N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|330811210|ref|YP_004355672.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379318|gb|AEA70668.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 456

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 23/191 (12%)

Query: 178 LIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
           L YR     F Q NAG+N  M    L+W+       +  +L+L+CG GNF+L LA+   +
Sbjct: 274 LAYR--PGDFIQVNAGVNEAMIAQALQWLAPQA---EERVLDLFCGLGNFALPLAKSVRQ 328

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+AVE  +  VE A  N  +N++NN    +    + +Q          L D +     F 
Sbjct: 329 VVAVEGVQTMVERAAANAVSNNLNNTAFFQ---ADLSQP---------LADAEWIGEGFS 376

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFP 351
            + +DPPR G  +    +       ++Y+SCNP +L RD + ++   + ++R  + D FP
Sbjct: 377 AVLLDPPRDGAFEVVRKLSSLGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFP 436

Query: 352 YTRHMECGVLL 362
            T H+E   L 
Sbjct: 437 QTAHVEAMALF 447


>gi|148827480|ref|YP_001292233.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae
           PittGG]
 gi|148718722|gb|ABQ99849.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           PittGG]
          Length = 438

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N   N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|308187944|ref|YP_003932075.1| enzyme [Pantoea vagans C9-1]
 gi|308058454|gb|ADO10626.1| putative enzyme [Pantoea vagans C9-1]
          Length = 456

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 162/365 (44%), Gaps = 43/365 (11%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQQTKE 69
           +Q  A+ + R+     A  V   ++   +P  YR RA   + W +      + F Q+   
Sbjct: 119 QQSKAQALSRMLSRAAAQNVAVDEVIAGQPWGYRRRARLGLQWQNKAQRLQMGFRQEASN 178

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL-LD 128
            +                +++     L P L A L  +    S + +A+  L +  L L 
Sbjct: 179 DL----------------VDIQHCPILAPELEALLVPLHQCLS-ALRAVRRLGHVELVLA 221

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY---RQIEN 185
           D      +R  DALHA   + +L   ++K ++ L  D  +E L     ++ +    Q++ 
Sbjct: 222 DNGPLMILRHLDALHADDRE-KLEQFSHKHQLMLFLDAGEEELNALNESVPFYHSHQLKL 280

Query: 186 SFT-----QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEI 239
           +F+     Q N  +N  M+   +A       D +L+L+CG GNF+L +      V+ VE 
Sbjct: 281 TFSPQDFIQVNDAVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGIFVQNVVGVEG 340

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
               V  A YN   N++ NV   + + +E         E +R       +  F  + +DP
Sbjct: 341 IAALVRQAAYNADLNNLKNVSFFQHNLEE---------EVSRQP---WAAQGFNKVLLDP 388

Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357
            R+G       +V+  P  ++Y+SCNP +L RD  ++LS  + +ER+A+ D FP+TRH+E
Sbjct: 389 ARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDSQTLLSAGYQLERVAMLDMFPHTRHLE 448

Query: 358 CGVLL 362
             VL 
Sbjct: 449 SMVLF 453


>gi|259909468|ref|YP_002649824.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|224965090|emb|CAX56622.1| 23S rRNA (Uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283479541|emb|CAY75457.1| putative SAM-dependent methyltransferase [Erwinia pyrifoliae DSM
           12163]
          Length = 438

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 20/158 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG GNF+L + +    V+ VE     V  A YN   N++NNV   + + +E    
Sbjct: 296 VLDLYCGMGNFTLPMGKFAKNVVGVEGVAALVAKAGYNAELNNLNNVTFWQHNLEE---- 351

Query: 273 MRREREFNRLKDIDIHSYR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSL 328
                      D+    +    F  + +DP R+G       + +  P  ++Y+SCNP +L
Sbjct: 352 -----------DVSRQPWAAQGFNKVLLDPARAGAAGVMAHITKLAPQRVVYVSCNPTTL 400

Query: 329 CRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
            RD  IL T+ + +ER+ + D FP+T H+E  VL  RK
Sbjct: 401 ARDSEILLTSGYQLERVTMLDMFPHTGHLESMVLFSRK 438


>gi|229591917|ref|YP_002874036.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
           SBW25]
 gi|229363783|emb|CAY51209.1| 23s rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens
           SBW25]
          Length = 450

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 27/193 (13%)

Query: 178 LIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231
           L YR     F Q NAG+N  M    LEW+       Q D  +L+L+CG GNF+L LAR  
Sbjct: 274 LAYR--PGDFVQVNAGVNAAMVAQALEWLAP-----QPDERVLDLFCGLGNFALPLARQV 326

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+AVE  +  V+ A  N  +N+++N +  +    + +Q          L D +     
Sbjct: 327 REVVAVEGVQTMVDRAAVNAVSNNLHNAQFFQ---ADLSQP---------LTDAEWAKQG 374

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349
           F  + +DPPR G  +    +       ++Y+SCNP +L RD + ++   + ++R  + D 
Sbjct: 375 FSAVLLDPPRDGALEVVRKLATLKAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDM 434

Query: 350 FPYTRHMECGVLL 362
           FP T H+E   L 
Sbjct: 435 FPQTAHVEAMALF 447


>gi|322419663|ref|YP_004198886.1| TrmA family RNA methyltransferase [Geobacter sp. M18]
 gi|320126050|gb|ADW13610.1| RNA methyltransferase, TrmA family [Geobacter sp. M18]
          Length = 438

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 162/378 (42%), Gaps = 47/378 (12%)

Query: 8   DQYEQQLAEKVDRLRQMMLAFQVP--NLQIFRSEP--IHYRMRAEFHIWHDGDDLYHIMF 63
           +Q EQ+ A   D L ++    +VP  N+      P    YR R +  +      +    F
Sbjct: 86  EQLEQKGAIFADTLSRIG---KVPRENVLPVAGSPDCYGYRSRVQVKVSQQKGAVNLGFF 142

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRA--KLFQIDYLTSQSDQAIVT 120
              + E   +  F  G  L N L+  M +  R L P L     + Q+D  T    + I  
Sbjct: 143 RTASHE---VVDFGAGCPLANDLLNRMASEFRALLPRLPQLDCISQLDLSTGDEGEGIAI 199

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA--- 174
           L       D       +L + L A + Q+  +  A      K  L R +  E L+ +   
Sbjct: 200 LHCKGSRPD-------QLVERLSASREQLPSVAGAFVRGGAKGELTRAFGIESLSYSIPA 252

Query: 175 -----GRTLIYRQIENSFTQPNAGINVHMLE--WVLAATKGIQGDLLELYCGNGNFSLVL 227
                 R L  R     F+Q N   N+ ++   W  A   G +  +L+LYCGNGN S+ L
Sbjct: 253 GLFPGSRELRLRFGRGGFSQVNYRQNLALIGTVWEWAGLTGKE-RVLDLYCGNGNISIPL 311

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A +   V  VE   PS+  A  N  AN V N      +S + + A +  R  ++ K+   
Sbjct: 312 APYAAEVFGVEGFAPSIVDAAANAEANGVGN------ASFQVSDAAQAVRRLHKRKE--- 362

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT-HTIERLAL 346
              +F  + +DPPR+G + A      A   I+Y+SC+P +L RDL++LS+  + + R   
Sbjct: 363 ---KFDLVVLDPPRAGAEAAAELAQLAPEKIIYVSCDPATLARDLAVLSSNGYQLTRSRP 419

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP T H+E    L+R
Sbjct: 420 VDMFPQTYHLESVTELIR 437


>gi|156975785|ref|YP_001446692.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|226725399|sp|A7MTS9|RUMA_VIBHB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|156527379|gb|ABU72465.1| hypothetical protein VIBHAR_03529 [Vibrio harveyi ATCC BAA-1116]
          Length = 439

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 168/378 (44%), Gaps = 60/378 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y+QQL  K   LRQ+M  F   ++++      E + YR RA   ++ D      + F  +
Sbjct: 98  YDQQLTHKQQTLRQLMRKFAGSDIELGAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156

Query: 67  TKERMRIDYFMPGSLL---INALMIEMMATIRL----EPLLRAKLFQIDYLTSQSDQAIV 119
            K+  +I       +L   +N L+ E+ +T++     E L   +L   D      +   +
Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKKPEQLGHVELVLGD------NAPCI 210

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV---AGR 176
           TL +   L +      + L     A+++Q  L       ++    D V+  +     AG 
Sbjct: 211 TLRHLNKLTEKETNTLVEL-----AKRHQASLYLMPETDQL----DLVEGEVPFYQEAGV 261

Query: 177 TLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           T+ +    N+F Q N  +N  M+    +W+   +      +L+L+CG GNFSL +A+   
Sbjct: 262 TVPF--TPNNFIQVNQAVNQKMVAQAVDWLDPKS---DERVLDLFCGLGNFSLPIAKRAK 316

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ VE     VE A  N + N +NN +    +  ++F   +    +F++          
Sbjct: 317 HVVGVEGVAEMVEKAVNNASLNQINNARFYHANLEQDFEGQVWAAEQFDK---------- 366

Query: 292 FKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLAL 346
              + +DP R+G    +D  +V   +    I+Y+SCNP +L RD  S+L   + + +L +
Sbjct: 367 ---VLLDPARAGASGIIDQVSVLGAR---RIVYVSCNPATLARDSQSLLEQGYQLTKLGM 420

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E   L  +
Sbjct: 421 LDMFPHTSHLESMALFEK 438


>gi|27364943|ref|NP_760471.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio vulnificus CMCP6]
 gi|320155330|ref|YP_004187709.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio vulnificus
           MO6-24/O]
 gi|50401570|sp|Q8DC67|RUMA_VIBVU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|27361089|gb|AAO09998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio vulnificus
           CMCP6]
 gi|319930642|gb|ADV85506.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio vulnificus
           MO6-24/O]
          Length = 438

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 161/382 (42%), Gaps = 68/382 (17%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFD 64
           Y+ QLA K   L Q+M  F     +I  S P+      YR RA   +  D      + F 
Sbjct: 98  YQAQLAYKQRTLLQLMKKFS--GSEILLSPPVTGLEKAYRRRARVSLMWDKKS-RQLQFG 154

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY--------LTSQSDQ 116
            + K+  +I+      +L+  L         L P L+A L    +        L +  + 
Sbjct: 155 FRRKQSKQIENVTQCPVLVAELEC-------LLPELKAILSHFQHPEHLGHVELVAADNG 207

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
           A++TL +   L D   E   +LR      +  + L+  +++    L+R        ++G 
Sbjct: 208 AVITLRHTGPLLD---EDVAKLRQCAEQHQATLYLMPASDQ----LER--------ISGE 252

Query: 177 TLIYRQI-------ENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
              Y++I        N+F Q N  +N    V  LEW+   +      +L+L+CG GNFSL
Sbjct: 253 APYYQEIGFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSD---RVLDLFCGLGNFSL 309

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A     V  VE     V+ A  N + N +NN +    +          E++F      
Sbjct: 310 PIASKAKSVTGVEGVDEMVQKAAINASLNQINNAQFFHAN---------LEQDF---VGQ 357

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIE 342
              S +F  I +DP R+G     +  V A     ++Y+SCNP +L RD  S+L   + + 
Sbjct: 358 PWASEKFDKILLDPARAGA-SGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLT 416

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           +L + D FPYT H+E   L  +
Sbjct: 417 KLGMLDMFPYTSHLESMALFEK 438


>gi|52424295|ref|YP_087432.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia
           succiniciproducens MBEL55E]
 gi|115305730|sp|Q65W13|RUMA_MANSM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|52306347|gb|AAU36847.1| TrmA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 440

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 23/186 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N+ +N  M    L+W+       Q  +L+L+CG GNF+L L+R     + +E    
Sbjct: 270 FIQVNSLLNQRMITAALDWLDVQK---QDHVLDLFCGMGNFTLPLSRRVKSAVGIEGISA 326

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            VE A+ N   N   NV+  R    + F   +     FN+             I +DPPR
Sbjct: 327 MVEKAKANAERNQCQNVQFYRADLDQNFADEVWATEPFNK-------------ILLDPPR 373

Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECG 359
           +G   A   + +     ILY+SCNP +L RD  I L++ + ++++A+ D FP+T H+E  
Sbjct: 374 TGAAFALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRVKKVAMIDMFPHTGHLESI 433

Query: 360 VLLVRK 365
            L  ++
Sbjct: 434 TLFEKQ 439


>gi|282934859|ref|ZP_06340092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
 gi|281301090|gb|EFA93401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
          Length = 481

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +V  VEI KP+V+ AR N   N + N + V   ++E    
Sbjct: 338 VIDAYSGIGTIGLSVAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPN 397

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E              +   IFVDPPR GL    +   V+  P  I+YISCNP ++ R
Sbjct: 398 WVNE------------GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVR 445

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL++     +  E +   D FP T H+EC  +L +K
Sbjct: 446 DLTMYQELGYDFEEITPVDMFPQTPHVECVTVLEKK 481


>gi|150391752|ref|YP_001321801.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149951614|gb|ABR50142.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens
           QYMF]
          Length = 452

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 127/274 (46%), Gaps = 24/274 (8%)

Query: 99  LLRAKLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
           LLR  + ++ + T +    ++T    L + + L D   E    L+   H    +   +  
Sbjct: 192 LLRHVITKVGFTTGEVMVVLITNGKQLPHKKELIDLLIEGVKGLKTVAHNINEKNTNVIF 251

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDL 213
            +KTK      Y+ + +      L +     SF Q N      + E  L  A    + ++
Sbjct: 252 GSKTKTLHGEGYITDYIG----DLKFNISPQSFFQVNPMQTKALYEKALEYANLTGEENV 307

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L++YCG G  SL LA+   +V  VE+ + ++E A++N   N++NN +     ++E    +
Sbjct: 308 LDIYCGIGTISLFLAQKAKKVYGVEVVEAAIEDAKHNAKINNLNNAEFHVGKAEEVVPQL 367

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
            +E              R + + VDPPR G +++ +  +V   P  ++Y+SCNP +L RD
Sbjct: 368 YKE------------GIRTEVVVVDPPRKGCEESVLETIVNMEPKRVVYVSCNPATLARD 415

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L+ L    +  + +   D FP++ H+E  VL+ R
Sbjct: 416 LAYLEEHGYKTQEVQPVDMFPHSSHVETVVLMSR 449


>gi|331086752|ref|ZP_08335829.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330409918|gb|EGG89353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 466

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 151/352 (42%), Gaps = 41/352 (11%)

Query: 39  EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98
           EP HYR +A+F I  D D      F        R    +P +    AL +     I LE 
Sbjct: 125 EPFHYRNKAQFPIGTDKDGKAVAGF-----YAGRTHQIIPNTDC--ALGVSQNQQI-LEE 176

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR---------------ECAIRLRDALH 143
           +L   +   +++ + ++Q    L+ H L+   +                 CA +  D L 
Sbjct: 177 ILS--VMNENHIPAYNEQDCSGLVRHILIRYGFTTKEIMVCFVINGDNLPCADKFVDKLS 234

Query: 144 ARKYQIQLIGRANK--TKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
             +    +    NK  T + + ++    + D  +T     + Y+    SF Q N      
Sbjct: 235 QIEGMRSITFSKNKENTNVIMGKEIEVLWGDGYITDYIGNVKYQISPLSFYQVNPVQTEK 294

Query: 198 MLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           + ++ L    G+ G+  + +LYCG G  SL LA+   +V  VEI   ++E A+ N   N 
Sbjct: 295 LYKYALEYA-GLTGEETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKQNAELND 353

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA 314
           + N +     ++E   A       N  K+          I VDPPR G ++A +  MV+ 
Sbjct: 354 MKNAEFFVGKAEEILPAYYE----NYAKEHPGQQAHADVIVVDPPRKGCEEALLETMVKM 409

Query: 315 YP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            P  I+Y+SC+  +L RDL  L    + +E++ + DQFP T H EC  LL R
Sbjct: 410 QPDRIVYVSCDSATLARDLKYLCGEGYALEKVQVVDQFPNTVHTECVTLLQR 461


>gi|315650587|ref|ZP_07903651.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
 gi|315487151|gb|EFU77469.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
          Length = 465

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 102/210 (48%), Gaps = 24/210 (11%)

Query: 168 DERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELY 217
           D  +T+ GR  I        +R    SF Q N      +    L  AA  G +  + ++Y
Sbjct: 262 DRTITIYGREYIEDYIGDVKFRISPQSFYQVNPVQTKKLYGKALEYAALTG-EETVWDMY 320

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  SL LA+    V  VEI   +++ AR N   N++ NVK     ++E       E 
Sbjct: 321 CGIGTISLFLAKSAKFVYGVEIVDAAIQNARENAKINNIENVKFFVGKAEEIITG---EY 377

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL 335
           E   ++DID+       I VDPPR GLD   +  M++  P  I+Y+SC+  +L RDL +L
Sbjct: 378 ENGNIRDIDV-------IVVDPPRKGLDKIAIDTMLKLSPKRIVYVSCDSSTLARDLKLL 430

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364
               + +++L + DQF  + H E  V++ +
Sbjct: 431 CEKEYELKKLTVVDQFARSYHTESVVVMSK 460


>gi|295400601|ref|ZP_06810579.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294977504|gb|EFG53104.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 458

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 15/164 (9%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           AA  G +  +++ YCG G   L LA+    +  +++   ++E A+ N   +   N   V 
Sbjct: 308 AALTGTE-KVVDAYCGVGTIGLWLAKDAGEIRGMDVIPEAIEDAKKNAKKHGFANATYVS 366

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYI 321
             ++       +E             ++   I VDPPR+G D+  +  + +  P  I+Y+
Sbjct: 367 GKAEALLPKWVKE------------GWKPDVIVVDPPRTGCDEQLLKTILKVKPQRIVYV 414

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP SL RD+ +LS  + ++ +   D FP+T H+EC VLLV+K
Sbjct: 415 SCNPSSLARDIDVLSKFYKVDYIQPVDMFPHTAHVECCVLLVKK 458


>gi|256852247|ref|ZP_05557633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           27-2-CHN]
 gi|260661721|ref|ZP_05862632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           115-3-CHN]
 gi|256615293|gb|EEU20484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           27-2-CHN]
 gi|260547468|gb|EEX23447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           115-3-CHN]
          Length = 447

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +V  VEI KP+V+ AR N   N + N + V   ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPN 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E              +   IFVDPPR GL    +   V+  P  I+YISCNP ++ R
Sbjct: 364 WVNE------------GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVR 411

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL++     +  E +   D FP T H+EC  +L +K
Sbjct: 412 DLTMYQELGYDFEEITPVDMFPQTPHVECVTVLEKK 447


>gi|313898104|ref|ZP_07831643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
 gi|312957132|gb|EFR38761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
          Length = 444

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G  S+ LA+    V  +EI   ++  AR N A N + N++ V   + ++ + 
Sbjct: 299 VLDLYCGVGTISMFLAQRAKHVTGIEIVPQAIRDARKNAALNGIANIEFVCSDAADYAK- 357

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                   +L +   H      I VDPPR G D  T+  MV   P  I+Y+SC+P +L R
Sbjct: 358 --------KLCEQGAHP---DVIVVDPPRKGCDAQTIDSMVMMQPKRIVYVSCDPGTLAR 406

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L    +  E +   D FP+T H+E   LL RK
Sbjct: 407 DLKLLEEKGYRTEIVQPLDMFPFTHHVETVCLLSRK 442


>gi|153955290|ref|YP_001396055.1| RNA methyltransferase [Clostridium kluyveri DSM 555]
 gi|219855711|ref|YP_002472833.1| hypothetical protein CKR_2368 [Clostridium kluyveri NBRC 12016]
 gi|146348148|gb|EDK34684.1| Predicted RNA methyltransferase [Clostridium kluyveri DSM 555]
 gi|219569435|dbj|BAH07419.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 453

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 31/236 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           +L   +H     +  + + +K ++   RDY+ E +      L ++    +F Q N+    
Sbjct: 238 KLSGIVHTINDSLSDVVQIDKLEVLYGRDYIMEEIL----GLKFKISPKTFFQTNS---- 289

Query: 197 HMLEWVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              E +    K   GD+      +LYCG G  S ++A    +V+ VE+ + +V++A  N 
Sbjct: 290 KGAEKLYGIVKEFLGDVSLKTVFDLYCGTGTISQIVASSAKKVIGVELVEEAVKSANENA 349

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N + N K +     +  + +  + +                I +DPPR G+    +  
Sbjct: 350 CLNEIENCKFIAGDVAKVVKTLNDKPDL---------------IILDPPRPGIHPKALRQ 394

Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  +    I+Y+SCNP +L  DL +L    + I+++ L D FP+T H+EC  L+ R
Sbjct: 395 IIDFNVNEIIYVSCNPKTLVEDLKVLIDGGYRIDKVKLMDMFPHTSHVECVALMSR 450


>gi|194337875|ref|YP_002019669.1| RNA methyltransferase, TrmA family [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310352|gb|ACF45052.1| RNA methyltransferase, TrmA family [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 488

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 20/197 (10%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223
           Y+ ERL      L +R   NSF Q N+     +L   +    G++ +  + +LYCG G  
Sbjct: 288 YITERLG----ALDFRISANSFFQTNSS-QAELLYQSILEVAGLRAEDTVYDLYCGTGTI 342

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L LA+H  +V+ +E+ + S+  AR N A N ++NV   ++  K+F Q M      + L 
Sbjct: 343 TLYLAKHCRQVVGLEVVESSINDARSNAAFNSIDNVAFFQVDLKDF-QGM-----LDLLG 396

Query: 284 DIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340
             D        I  DPPR+G+   A   M++  P  I+Y+SCNP SL RD   I    + 
Sbjct: 397 SYDAPG----VIITDPPRAGMHPKALSTMLRLRPRRIIYVSCNPASLARDGKEICLQGYK 452

Query: 341 IERLALFDQFPYTRHME 357
           +  +   D FP+T H+E
Sbjct: 453 LLSVQPVDMFPHTSHIE 469


>gi|226950293|ref|YP_002805384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A2 str. Kyoto]
 gi|226843642|gb|ACO86308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A2 str. Kyoto]
          Length = 450

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 31/240 (12%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           EC   ++  LH     +  + + +K +I   RDY+ E L      L ++    +F Q N+
Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289

Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  E + +  K   GD     +L+LYCG G    ++A    +V+ VE+ + +V+AA
Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVLDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 345

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N +NN + +     +  + ++++ +                I +DPPR G+   
Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  V  +    I+Y+SCNP +L  DL  ++   + +E++   D FP+T H+E  V L +
Sbjct: 391 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450


>gi|283768823|ref|ZP_06341734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
 gi|283104609|gb|EFC05982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
          Length = 436

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 15/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+E YCG G  SL+ +   ++V  +E+   +++ A+ N   NH++N         E   A
Sbjct: 293 LVEAYCGIGVMSLLASSKAEQVYGIELNPHAIQDAKRNAELNHLDNCHF------ECADA 346

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                +  + + ID       T+ +DPPRSGLD+A +  ++++ P  I+YISCNP +L +
Sbjct: 347 ADGLYKIAKKQKID-------TLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAK 399

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++++L   + I  +  FD FP T H+EC  LL +
Sbjct: 400 NIAVLKWKYQILTIQAFDLFPQTPHVECLCLLSK 433


>gi|229824364|ref|ZP_04450433.1| hypothetical protein GCWU000282_01685 [Catonella morbi ATCC 51271]
 gi|229786164|gb|EEP22278.1| hypothetical protein GCWU000282_01685 [Catonella morbi ATCC 51271]
          Length = 499

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 81/156 (51%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G  SL LAR   +V A+EI   +++ AR N  AN ++NV      ++E   A
Sbjct: 355 VLDAYCGIGTISLALARQAGQVYAMEIVPEAIDMARANAEANGLSNVTFQAGKAEEVLPA 414

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
            + E          IH   F    VDPPR GLD   V  +++  P  I+Y+SCNP +  R
Sbjct: 415 WQAE---------GIH---FDVAVVDPPRKGLDPEFVKTLIELAPDKIVYVSCNPATCAR 462

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D  +L+   + ++ +   D FP T H+E   LL RK
Sbjct: 463 DCQLLAQAGYELQWVQPVDLFPKTAHIEVVGLLERK 498


>gi|238754498|ref|ZP_04615853.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia ruckeri ATCC
           29473]
 gi|238707327|gb|EEP99689.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia ruckeri ATCC
           29473]
          Length = 419

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 31/189 (16%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q N  +N  M    LEW+      +  D  +L+L+CG GNF+L LARH  +V+ +E  
Sbjct: 251 FIQVNPTVNQKMVAQALEWL-----DVHPDERVLDLFCGMGNFTLPLARHARQVVGIEGV 305

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
              V   +YN   N ++NV     + +E               DID   +    F  I +
Sbjct: 306 ATLVANGQYNAQINSLSNVSFFHENLEE---------------DIDKQPWAAQGFDKILL 350

Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRH 355
           DP R+G     + +V+  P  ++Y+SCNP +L RD  + L   + + R+ + D FP+T H
Sbjct: 351 DPARAGAAGVMLHIVKLAPKRVVYVSCNPTTLARDSHVLLDAGYRLARVRMLDMFPHTGH 410

Query: 356 MECGVLLVR 364
           +E   L +R
Sbjct: 411 LESMALFIR 419


>gi|260887170|ref|ZP_05898433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
           ATCC 35185]
 gi|260863232|gb|EEX77732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
           ATCC 35185]
          Length = 466

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  +L LA+   RV  +EI KP++E A+ N   NH+ N   +   + E    
Sbjct: 320 VIDAYCGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLVGDATELMPR 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           +  E            + R   I VDPPR+G  +  +          I+Y+SCNP +L R
Sbjct: 380 LCHE------------NIRPHVIVVDPPRAGCTETVLKTFAGMRPDRIVYVSCNPATLAR 427

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL+IL+   ++   +   D FP T H+E    L+R
Sbjct: 428 DLAILAKLGYSAREIQPVDMFPQTSHVEAVTKLIR 462


>gi|225026465|ref|ZP_03715657.1| hypothetical protein EUBHAL_00714 [Eubacterium hallii DSM 3353]
 gi|224956204|gb|EEG37413.1| hypothetical protein EUBHAL_00714 [Eubacterium hallii DSM 3353]
          Length = 382

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 172/390 (44%), Gaps = 47/390 (12%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLY 59
            G   ID  YE+QL +K     +++ +F      I   +P HYR +    +  D   + +
Sbjct: 12  GGCQYIDLPYEEQLKKKQKNTNKLLKSFGKVKPIIGMKDPWHYRNKVHGVVAGDRHGNCF 71

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEP--------LLRAKLFQID 108
             +++ ++   +R+D  +  +   + +M     +M + ++ P         LR  L +  
Sbjct: 72  TGIYENRSHRVIRVDSCLIENQKADEIMNTVTSLMKSFKMRPYNEDTGYGFLRHILVRTG 131

Query: 109 YLTSQSDQAIVTLI--------YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           Y T Q    +VT          + + L     E    + + ++ R   + L    +K +I
Sbjct: 132 YHTGQIMVVLVTASPVFPSKNNFVKALRKEHPEITTIIAN-VNNRNTSMVL---GDKQQI 187

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
              + Y+++ L   G+T  +R    SF Q N  I   +L        G+ G   +++ Y 
Sbjct: 188 LYGKGYIEDVL--CGKT--FRISPKSFYQVNP-IQTEVLYNKAIEFAGLTGKERVIDAYS 242

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   +V + +   V++VE+   +V  A +N   N V N++  +  + +F   M   +E
Sbjct: 243 GIGTIGMVASDNAGEVISVELNGDAVRDAVFNAKQNKVKNIRFYKDDAGDFMVKMASHKE 302

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS 336
                       +   +F+DPPRSG D   +  +++  P  ++YISCNP++L RDL  L+
Sbjct: 303 ------------KADVVFMDPPRSGSDKKFLDSLLRLRPKKVVYISCNPETLARDLKHLT 350

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + I+ +   D FP T H+E   LL R+
Sbjct: 351 GNGYRIKEIQPVDMFPSTGHVEAVCLLSRR 380


>gi|28211569|ref|NP_782513.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
 gi|50401760|sp|Q892Z2|Y1941_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_01941
 gi|28204010|gb|AAO36450.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
          Length = 456

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 31/232 (13%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + + +K  I   RDY+ E L      L ++    SF Q N+       E 
Sbjct: 245 LHTINDSLSDVVQCDKLNILYGRDYIIEDLL----GLKFKITPLSFFQTNS----KGAEK 296

Query: 202 VLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +   G+     + +LYCG G    ++A    +V+ +E+ + +VE+AR N   N++
Sbjct: 297 LYSIVRDFIGESKSKTVFDLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNL 356

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315
           NN + +   + +  Q +   +E  +  D+         I +DPPR G+    +  V  + 
Sbjct: 357 NNCEFI---AGDIAQVI---KEVKQKPDV---------IILDPPRPGVHPKALEYVIKFD 401

Query: 316 -PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            P I+Y+SCNP +L  DL +L    + IE++   D FP T H+E  V L RK
Sbjct: 402 SPTIVYVSCNPKTLVEDLKVLVENGYVIEKVKGMDMFPSTPHVETVVGLRRK 453


>gi|270284909|ref|ZP_06194303.1| rRNA methyltransferase [Chlamydia muridarum Nigg]
 gi|270288937|ref|ZP_06195239.1| rRNA methyltransferase [Chlamydia muridarum Weiss]
 gi|14195332|sp|P58106|Y118_CHLMU RecName: Full=Uncharacterized RNA methyltransferase TC_0118
          Length = 397

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 119/244 (48%), Gaps = 25/244 (10%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
           LLD      +I   + L AR           +T       ++ ++L++ GR+ I+     
Sbjct: 171 LLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGEQFLKQQLSIEGRSNIFHVRPR 225

Query: 186 SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF QP +     +++ +    +  G +  LL+LYCG G   + L+ +  +++ VE+   +
Sbjct: 226 SFFQPQSRQAEKIIQTIKDFISPTG-EETLLDLYCGAGTIGISLSPYVKKIIGVELVPDA 284

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V +A+ NI  N   N+++    +K+F       R    L  +DI       + +DPPR G
Sbjct: 285 VASAQENIQLNSA-NMEVFLEDAKQFC------RRHEHLPPLDI-------VVIDPPRCG 330

Query: 304 LDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           + +  +  +++  P  I+Y+SCNP +   + SIL    + ++R+   DQFP+T H+E  V
Sbjct: 331 MQNKALKYLLRMSPKKIIYVSCNPLTQISECSILVEHGYQLQRMQPIDQFPHTHHLENVV 390

Query: 361 LLVR 364
           LL R
Sbjct: 391 LLER 394


>gi|70731793|ref|YP_261535.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
           Pf-5]
 gi|91207808|sp|Q4K898|RUMA_PSEF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|68346092|gb|AAY93698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas
           fluorescens Pf-5]
          Length = 450

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 35/197 (17%)

Query: 178 LIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231
           L YR     F Q NAG+N  M    LEW+       Q D  +L+L+CG GNF+L LAR  
Sbjct: 274 LAYR--PGDFVQVNAGVNEAMVAQALEWL-----APQADERVLDLFCGLGNFALPLARQV 326

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+AVE     V  A  N A+N+++N +  +    +   A     E             
Sbjct: 327 REVVAVEGVATMVARAAENAASNNLHNTRFFQADLSQPLSAAEWADE------------G 374

Query: 292 FKTIFVDPPRSGLDD-----ATVGMVQAYPHILYISCNPDSLCRD-LSILSTTHTIERLA 345
           F  + +DPPR G  +     AT+G  +    ++Y+SCNP +L RD + ++   + ++R  
Sbjct: 375 FSAVLLDPPRDGAFEVVRQLATLGAKR----LVYVSCNPATLARDTVELIKQGYRLKRAG 430

Query: 346 LFDQFPYTRHMECGVLL 362
           + D FP T H+E   L 
Sbjct: 431 ILDMFPQTAHVEAMALF 447


>gi|50401486|sp|Q7MHP7|RUMA_VIBVY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 438

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 161/382 (42%), Gaps = 68/382 (17%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFD 64
           Y+ QLA K   L Q+M  F     +I  S P+      YR RA   +  D      + F 
Sbjct: 98  YQAQLAYKQRTLLQLMKKFS--GSEILLSPPVTGLEKAYRRRARVSLMWDKKS-RQLQFG 154

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY--------LTSQSDQ 116
            + K+  +I+      +L+  L         L P L+A L    +        L +  + 
Sbjct: 155 FRRKQSKQIENVTQCPVLVAELEC-------LLPELKAILSHFHHPEHLGHVELVAADNG 207

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
           A++TL +   L D   E   +LR      +  + L+  +++    L+R        ++G 
Sbjct: 208 AVITLRHTGPLLD---EDVAKLRQCAEQHQATLYLMPASDQ----LER--------ISGE 252

Query: 177 TLIYRQI-------ENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
              Y++I        N+F Q N  +N    V  LEW+   +      +L+L+CG GNFSL
Sbjct: 253 APYYQEIGFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSD---RVLDLFCGLGNFSL 309

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A     V  VE     V+ A  N + N +NN +    +          E++F      
Sbjct: 310 PIASKAKSVTGVEGVDDMVQKAALNASLNQINNAQFFHAN---------LEQDF---VGQ 357

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIE 342
              S +F  I +DP R+G     +  V A     ++Y+SCNP +L RD  S+L   + + 
Sbjct: 358 PWASEKFDKILLDPARAGA-SGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLT 416

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           +L + D FPYT H+E   L  +
Sbjct: 417 KLGMLDMFPYTSHLESMALFEK 438


>gi|317049303|ref|YP_004116951.1| TrmA family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316950920|gb|ADU70395.1| RNA methyltransferase, TrmA family [Pantoea sp. At-9b]
          Length = 438

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 32/215 (14%)

Query: 165 DYVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHM----LEWVLAATKGIQGD- 212
           D  D+   +   T  YR  +         F Q N G+N  M    ++W+      +Q + 
Sbjct: 240 DGSDDLTALQSDTPFYRSFDLQLTFSPQDFIQVNDGVNQQMVAKAIDWL-----DLQPED 294

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+L+CG GNF+L + +  +  + VE     V  A YN     +NN+K VR       +
Sbjct: 295 RVLDLFCGMGNFTLPIGKFVENAVGVEGVAALVRQAAYNA---DLNNLKNVRFFQHNLEE 351

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCR 330
            + R+            +  F  + +DP R+G       +V+  P  ++Y+SCNP +L R
Sbjct: 352 DVARQ---------PWAAQGFNKVLLDPARAGAAGVMSHIVKLAPQRVVYVSCNPTTLAR 402

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  ++LS  + +ER+A+ D FP+T H+E  VL  +
Sbjct: 403 DSQTLLSAGYHLERVAMLDMFPHTSHLESMVLFSK 437


>gi|330839061|ref|YP_004413641.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
           35185]
 gi|329746825|gb|AEC00182.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
           35185]
          Length = 458

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  +L LA+   RV  +EI KP++E A+ N   NH+ N   +   + E    
Sbjct: 312 VIDAYCGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLVGDATELMPR 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           +  E            + R   I VDPPR+G  +  +          I+Y+SCNP +L R
Sbjct: 372 LCHE------------NIRPHVIVVDPPRAGCTETVLKTFAGMRPDRIVYVSCNPATLAR 419

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL+IL+   ++   +   D FP T H+E    L+R
Sbjct: 420 DLAILAKLGYSAREIQPVDMFPQTSHVEAVTKLIR 454


>gi|330012192|ref|ZP_08307325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS
           92-3]
 gi|328533894|gb|EGF60562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS
           92-3]
          Length = 434

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 27/188 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N G+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNDGVNQQMVRTALEWLDLRP---EDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N A N ++NV     + +E               D+   ++    F  + + P
Sbjct: 320 LVEKGRENAARNGLSNVTFFHENLEE---------------DVTRQAWAKHGFDKVLLAP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  ++Y+SCNP +L RD  ++L   + I+RLA+ D FP+T H+E
Sbjct: 365 ARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLE 424

Query: 358 CGVLLVRK 365
             VL  R+
Sbjct: 425 SMVLFERR 432


>gi|303273590|ref|XP_003056155.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462239|gb|EEH59531.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 549

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 19/216 (8%)

Query: 171 LTVAGRTLIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           +++  R +++     SF Q N   A I V  +E   A T      +L+L+CG G F L L
Sbjct: 326 ISITLRGVVFALSVKSFFQTNTKQAEILVESVEEACALTGENTETILDLFCGVGTFGLCL 385

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A     V   EI   +VE A+ N  AN + N    +    + +++M      +  K I  
Sbjct: 386 ASKARHVYGCEIVPEAVEDAKRNAVANRIENATFWQADLAQLSESMLCADSKSMSKSIVF 445

Query: 288 HS--YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS----TTH 339
                R   + VDP RSG+D   V ++++   P I+Y+SCNP +  RD+++L      T 
Sbjct: 446 GKDVVRPDVVIVDPARSGMDVTLVAILRSLGIPRIVYVSCNPATQARDVALLCDVSDNTQ 505

Query: 340 TIERLALF--------DQFPYTRHMECGVLLVRKPS 367
           + + LA +        D FP+T H+E  V+L R PS
Sbjct: 506 SGDLLAKYRLISCIPVDLFPHTPHVENIVVLERVPS 541


>gi|87118650|ref|ZP_01074549.1| 23S rRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121]
 gi|86166284|gb|EAQ67550.1| 23S rRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121]
          Length = 441

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 30/216 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHM----LEWVLAATKGIQG 211
           +D   +++     +L + Q+EN         F Q N  +NV M    L+W+  +    Q 
Sbjct: 241 QDPAQDKVKCETDSLRHYQVENLTIHYHPQDFIQVNQRMNVKMVAQALQWLALSE---QD 297

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+L+CG GNFSL +A+  ++V+ VE+    V  A  N   N + NV  +     + T+
Sbjct: 298 KVLDLFCGAGNFSLAMAKTAEKVVGVEVQAQMVRNAERNAERNGLKNVTFI---GADLTK 354

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCR 330
            +R E     LK        F    +DPPR+G  +    +++     ILY+SC+  +L R
Sbjct: 355 TVRNE----ALKK------GFSKALLDPPRAGAFEFLPSLIKLKIDTILYVSCDAATLAR 404

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   L +  + ++R+++ + FP T H+E  +LL +K
Sbjct: 405 DAEFLVAHGYQVKRVSMMEMFPQTAHVETMMLLQKK 440


>gi|37681006|ref|NP_935615.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio vulnificus
           YJ016]
 gi|37199756|dbj|BAC95586.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016]
          Length = 440

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 161/382 (42%), Gaps = 68/382 (17%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFD 64
           Y+ QLA K   L Q+M  F     +I  S P+      YR RA   +  D      + F 
Sbjct: 100 YQAQLAYKQRTLLQLMKKFS--GSEILLSPPVTGLEKAYRRRARVSLMWDKKS-RQLQFG 156

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY--------LTSQSDQ 116
            + K+  +I+      +L+  L         L P L+A L    +        L +  + 
Sbjct: 157 FRRKQSKQIENVTQCPVLVAELEC-------LLPELKAILSHFHHPEHLGHVELVAADNG 209

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
           A++TL +   L D   E   +LR      +  + L+  +++    L+R        ++G 
Sbjct: 210 AVITLRHTGPLLD---EDVAKLRQCAEQHQATLYLMPASDQ----LER--------ISGE 254

Query: 177 TLIYRQI-------ENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
              Y++I        N+F Q N  +N    V  LEW+   +      +L+L+CG GNFSL
Sbjct: 255 APYYQEIGFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSD---RVLDLFCGLGNFSL 311

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A     V  VE     V+ A  N + N +NN +    +          E++F      
Sbjct: 312 PIASKAKSVTGVEGVDDMVQKAALNASLNQINNAQFFHAN---------LEQDF---VGQ 359

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIE 342
              S +F  I +DP R+G     +  V A     ++Y+SCNP +L RD  S+L   + + 
Sbjct: 360 PWASEKFDKILLDPARAGA-SGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLT 418

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           +L + D FPYT H+E   L  +
Sbjct: 419 KLGMLDMFPYTSHLESMALFEK 440


>gi|261342212|ref|ZP_05970070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315546|gb|EFC54484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacter
           cancerogenus ATCC 35316]
          Length = 432

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 17/180 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N G+N  M+   LA     Q D +L+L+CG GNF+L LA+    V+ VE  +  V 
Sbjct: 263 FIQVNDGVNQQMIATALAWLDVQQSDRVLDLFCGMGNFTLPLAQKAACVVGVEGVEALVA 322

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             + N   N + NV     +   + TQ     + F++             I +DP R+G 
Sbjct: 323 KGQENARENGLQNVTFFHQNLEDDVTQQPWARQGFDK-------------ILLDPARAGA 369

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362
                 +++  P  ++Y+SCNP +L RD  +++S  + I+RLA+ D FP+T H+E  VL 
Sbjct: 370 PGVMQHIIKLAPKRVVYVSCNPATLARDSEALVSGGYQIQRLAMLDMFPHTGHLESIVLF 429


>gi|261253890|ref|ZP_05946463.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio orientalis CIP
           102891]
 gi|260937281|gb|EEX93270.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio orientalis CIP
           102891]
          Length = 439

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 19/195 (9%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
           AG T+ +    N+F Q N  +N  M+   L   +  + D +L+L+CG GNFSL +A+   
Sbjct: 259 AGVTIPFE--PNNFIQVNQKVNQSMVAQALDWLELDEHDCVLDLFCGLGNFSLPMAQKVK 316

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291
           +V+ VE     V+ A+ N   N ++N    + +  ++F+  +  + +F++          
Sbjct: 317 QVIGVEGVDAMVDKAQDNATVNGISNAAFHQANLEQDFSGQLWAQEKFDK---------- 366

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349
              I +DP R+G       + Q     ++Y+SCNP +L RD  S+L+  + +++L + D 
Sbjct: 367 ---ILLDPARAGASGIIEHISQLGASRVVYVSCNPATLARDSQSLLNQGYKLQKLGMLDM 423

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E   L V+
Sbjct: 424 FPHTSHLESMALFVK 438


>gi|163755043|ref|ZP_02162164.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1]
 gi|161325110|gb|EDP96438.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1]
          Length = 470

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 24/215 (11%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +  AGR  I+ ++E         SF Q N+    + L  +     G+QGD L
Sbjct: 267 DTIYDQEVICYAGRDHIFEEMEGLQFKINAKSFYQTNSD-QAYELYKITRDFAGLQGDEL 325

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             +LY G G  +  +++   +V+ VE    ++EAA+ N A N++ N +      K+   A
Sbjct: 326 VYDLYTGTGTIAQFVSKKAKKVIGVESVPEAIEAAKENAAFNNITNTEFFVGDMKKVFNA 385

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                EF     I+ H      I  DPPR G+    V  +   A   ++Y+SCN  +  R
Sbjct: 386 -----EF-----IETHGTP-DVIITDPPRDGMHADVVQQILNIAPKKVVYVSCNSATQAR 434

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL+++  T+ + ++   D FP T H+E  VLL R+
Sbjct: 435 DLALMDATYKVTKVQAVDMFPQTHHIENVVLLERR 469


>gi|153855592|ref|ZP_01996708.1| hypothetical protein DORLON_02726 [Dorea longicatena DSM 13814]
 gi|149752013|gb|EDM61944.1| hypothetical protein DORLON_02726 [Dorea longicatena DSM 13814]
          Length = 363

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L+ A++  +V+ VE+ K +V+ AR N   N + N +I    +  F   
Sbjct: 219 VIDAYCGTGTIGLIAAKNAKKVIGVELNKDAVKDARINAKENGITNAEIYAGDAGRFMVD 278

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M  +   N+  D+         +F+DPPR+G D+  +  +++  P  ++Y+SCNP++L R
Sbjct: 279 MASK---NQKADV---------VFMDPPRAGSDEKFLSSVIKLGPKRVVYVSCNPETLAR 326

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365
           DL  L T H  + + +   D FP+  H+E  V LVRK
Sbjct: 327 DLKYL-TRHGYQAVKIQPVDNFPFCDHIETVVKLVRK 362


>gi|167623152|ref|YP_001673446.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|226725389|sp|B0TK00|RUMA_SHEHH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|167353174|gb|ABZ75787.1| RNA methyltransferase, TrmA family [Shewanella halifaxensis
           HAW-EB4]
          Length = 445

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 145/341 (42%), Gaps = 54/341 (15%)

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR--LEPL 99
           HYR RA    W          FD+ TK    I      S   + + I+  A +   L  L
Sbjct: 135 HYRRRARLATW----------FDKNTK---HISLGFRASSSSDVVEIQSCAVLAEPLSAL 181

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +    F ++ L+ +     V L       D      +R+  AL + K + +L+  ANK +
Sbjct: 182 IPDLAFMLNQLSGKKALGHVELTQA----DNGNFVVLRVTKAL-SDKDKARLVEFANKHQ 236

Query: 160 ICL---DRDYVDERLTVAGRTLIYRQIEN---------SFTQPNAGINVHML----EWVL 203
           + +   D D   E L  AG    Y   +N         +F Q NA +N  M+    EW+ 
Sbjct: 237 VIVLLQDDDAQCEHLNGAGEQPYYGFDDNQVKLNFSPGNFIQVNAQVNQAMVSQAVEWL- 295

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             +      +L+L+CG GNFSL LA+    V+ VE  +  VE AR N   + ++ V    
Sbjct: 296 --SPKADERVLDLFCGIGNFSLPLAKDGAEVIGVEGVQAMVEQARINAKQSGLDKVSFYH 353

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YIS 322
               + +  + +E    ++            + +DP R+G  ++   + +  P  L Y+S
Sbjct: 354 A---DLSADLSKEPWLGKV----------DKMLIDPARAGAYESMQSLKKLKPKALVYVS 400

Query: 323 CNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
           CNP SL RD   IL   + ++++ L D FP T H+E   L 
Sbjct: 401 CNPASLARDSEVILKQGYQLKKIGLVDMFPQTHHLESMALF 441


>gi|145632582|ref|ZP_01788316.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           3655]
 gi|144986777|gb|EDJ93329.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           3655]
          Length = 438

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 88/183 (48%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L+LA+     + +E     V+
Sbjct: 269 FIQVNRALNERMVNTALDWLELNQQDCVLDLFCGMGNFTLLLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N   N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNATRNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ ++ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKSEKILYVSCNPATLVRDAEILRDFGYKIEKSSVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|325847814|ref|ZP_08170036.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480832|gb|EGC83885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 548

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 122/269 (45%), Gaps = 43/269 (15%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +R  LF  + L ++++  IV+ IYH + D         L DA+           + +  +
Sbjct: 225 MRRDLFAHNLLNARTNGRIVS-IYHVINDS--------LSDAV-----------KVDSME 264

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +   + Y++E +      L ++    SF QPN      + +  +  A      ++L+LY 
Sbjct: 265 LLFGKKYIEENMN----DLKFQISPFSFFQPNVFTAEKIYQKAIELANVDKNKNVLDLYS 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  + + A+  ++ + +EI + +VE A  N   N + N+  +                
Sbjct: 321 GTGTITQLFAKAANKAVGIEIVEEAVEKAFDNAKENQIENINFIAG-------------- 366

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI-L 335
            + L+ ID+   ++  + +DPPR G++   +  +        +YISCNP +  RD+ I +
Sbjct: 367 -DVLEKIDLVKGKYDIVVLDPPREGINPKAIKKIMDINPKEFVYISCNPKTQVRDIEIFM 425

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
              + +E+   FDQFP +RH+E   LL +
Sbjct: 426 ENGYKVEKYQAFDQFPRSRHVETVALLSK 454


>gi|293571847|ref|ZP_06682863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E980]
 gi|291608101|gb|EFF37407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E980]
          Length = 457

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 20/214 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
            +K K+  DRDY++++L   G+T  YR    SF Q N     ++ +  +   +  + D+ 
Sbjct: 258 GDKEKVLYDRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIV 313

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ Y G G   L LA   D+V  +E+   ++E A++N   N + NV         + +  
Sbjct: 314 IDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENV---------YYEVG 364

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
           + E+   + ++  I   +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD
Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             + +   + ++++   D FP T H+E     V+
Sbjct: 422 AKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455


>gi|291521011|emb|CBK79304.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7]
          Length = 463

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 28/262 (10%)

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
           +T+  ++  +T +  RLLD    +   R+   +H     +  + ++++T+I   +DY  E
Sbjct: 225 VTTSQEECDLTELTQRLLD---LQLEGRIVGIMHIINDTLADVVQSDETRILYGQDYFYE 281

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELYCGNGNFSLVL 227
            +      L ++    SF Q N  +   +L  +  +  G   D+   +LY G G  + +L
Sbjct: 282 HIL----GLKFKISTFSFFQTNT-LGAELLYDIARSYIGDTKDMTVFDLYSGTGTIAQIL 336

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    +V+ VEI + +VEAA+ N   N ++N         EF          + LK +D 
Sbjct: 337 AAVAKKVVGVEIVEEAVEAAKVNAGLNQLDNC--------EFIAG-------DVLKVLDT 381

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERL 344
              +   I +DPPR G+    +  +  Y  P+++YISC P SL RDL +L    + +++ 
Sbjct: 382 IEDKPDYIVLDPPRDGIHPKALDKIIDYQVPNMVYISCKPTSLARDLGVLIERGYKVKKT 441

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
              D FP T H E   LL +KP
Sbjct: 442 HCVDMFPGTVHCETVCLLSKKP 463


>gi|148264199|ref|YP_001230905.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146397699|gb|ABQ26332.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 439

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 17/183 (9%)

Query: 184 ENSFTQPNAGINVHMLE--WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           + SF+Q N   N+H+++  W  A   G +  +L+LYCGNGNF++ LA     ++  E   
Sbjct: 267 KGSFSQVNYQQNLHLIQLVWNWAELTGKE-KVLDLYCGNGNFTIPLAGFAQSMVGFEEFG 325

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S+  AR N  +N+V N +     +               +K +      F  + +DPPR
Sbjct: 326 QSINDARQNCESNNVTNAEFYCSDATL------------EVKKLAAAGESFDVVLLDPPR 373

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
            G  +    +    PH ILY+SC+P +L RD+ IL  + + + +    D FP T H+E  
Sbjct: 374 CGAAEVVSRIHAVSPHFILYVSCDPATLARDVDILKKSNYEVVKCQPVDMFPQTYHIESV 433

Query: 360 VLL 362
            LL
Sbjct: 434 TLL 436


>gi|295097348|emb|CBK86438.1| 23S rRNA m(5)U-1939 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 432

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 17/180 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N G+N  M+   LA       D +L+L+CG GNF+L LAR    V+ VE  +  V 
Sbjct: 263 FIQVNDGVNQQMVANALAWLDVQPTDRVLDLFCGMGNFTLPLARKAASVVGVEGVEALVV 322

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             + N   N + NV     +   + TQ    ++ F++             I +DP R+G 
Sbjct: 323 KGQENAQQNGLQNVTFFHQNLEDDVTQQPWAKQGFDK-------------ILLDPARAGA 369

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362
                 +++  P  ++Y+SCNP +L RD  ++LS  + I RLA+ D FP+T H+E  VL 
Sbjct: 370 PGVMQHIIKLAPERVVYVSCNPATLARDSEALLSGGYQIRRLAMLDMFPHTGHLESMVLF 429


>gi|326791042|ref|YP_004308863.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
           5427]
 gi|326541806|gb|ADZ83665.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
           5427]
          Length = 452

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 158/353 (44%), Gaps = 54/353 (15%)

Query: 40  PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
           P HYR +A++ I             +Q   +++  +F P S  +  L    +   + E +
Sbjct: 126 PYHYRNKAQYPI-------------RQINGKVQTGFFAPRSHQLIPLETCYIQDPKKEAI 172

Query: 100 LRAKL-FQIDYLTSQSDQAIVT-LIYHRLLDDAWRE-----CAIRLRDAL-HARKYQIQL 151
           ++A L F   Y  S  D+   T L+ H ++   +       C +     L HA ++   +
Sbjct: 173 MKAVLAFLEKYKISIYDEEKHTGLVRHLMIKTGYHTEEMMVCLVINGPKLPHADEFVKAI 232

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT----------QPNAGINVHMLEW 201
              A  T I L++ ++++  T+ G +      EN+             P +   V+  + 
Sbjct: 233 KAVAPVTSIILNQ-HLEKSNTILGNSCTVLDGENAIIDYIGDLQFKISPLSFFQVNPQQT 291

Query: 202 VLAATKGIQ-----GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +  TK ++     GD  + + YCG G+ SL LA+   +V  VEI   ++E A+ N A N
Sbjct: 292 EVLYTKALEYAELTGDEIVWDAYCGIGSISLFLAQKAKKVYGVEIIPEAIENAKENAALN 351

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQ 313
           H+ N +     ++E    M  +                 TI VDPPR G D   +  +++
Sbjct: 352 HITNAEFYVGKAEEVIPQMYEQ------------GIVADTIVVDPPRKGCDSKLLETLIK 399

Query: 314 AYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             P+ I+Y+SC+P +L RDL+ +++  + ++++   D FP T H+E  V L R
Sbjct: 400 MSPNKIVYVSCDPATLARDLAYLVAEGYQVDKVQPVDMFPQTTHVETVVKLSR 452


>gi|256003527|ref|ZP_05428517.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
           2360]
 gi|281418309|ref|ZP_06249329.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20]
 gi|255992551|gb|EEU02643.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
           2360]
 gi|281409711|gb|EFB39969.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20]
 gi|316941405|gb|ADU75439.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
           1313]
          Length = 455

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G  SL L++   R+  VE+ + +V+ A  N   N V N + +   +++    
Sbjct: 310 VFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPE 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M  +              R   + VDPPR G D+A +  +V   P  I+Y+SCNP +L R
Sbjct: 370 MYEK------------GVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLAR 417

Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVR 364
           DL  L+     +  +   D FP+T H+EC VL+ R
Sbjct: 418 DLKYLAEGGFEVREVQPVDMFPWTYHVECVVLMSR 452


>gi|237729748|ref|ZP_04560229.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2]
 gi|226908354|gb|EEH94272.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2]
          Length = 432

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 21/184 (11%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N G+N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNEGVNQQMVARALEWLDVQP---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            VE  R N   N ++NV     + +E     R+    N           F  + +DP R+
Sbjct: 320 LVEKGRENALNNGLHNVTFFHENLEE--DVTRQPWAKN----------GFDKVLLDPARA 367

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
           G       +++  P  ++Y+SCNP +L RD  ++L+  + I RLA+ D FP+T H+E  V
Sbjct: 368 GAAGVMQHIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRRLAMLDMFPHTGHLESMV 427

Query: 361 LLVR 364
           L  R
Sbjct: 428 LFER 431


>gi|323699039|ref|ZP_08110951.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. ND132]
 gi|323458971|gb|EGB14836.1| RNA methyltransferase, TrmA family [Desulfovibrio desulfuricans
           ND132]
          Length = 460

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 21/229 (9%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           +H+ + +  L     K    L    V E +    RT+ Y    N+F Q N      +   
Sbjct: 248 VHSSRARRSLAATGEKAVFRLGARTVTEEVAHGDRTVRYHLGPNAFFQTNTAGAGELFGT 307

Query: 202 V--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V       G++  +L+LYCG G   + LA    RV+ VE+++ +V  A  +   N + N 
Sbjct: 308 VREFCGLTGVE-TVLDLYCGCGAIGIFLADQARRVVGVEVSEEAVSKAWASAKLNKLTNC 366

Query: 260 KIVRMSSKEFTQA-MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYP 316
                   EFT A +        L   D+       + VDPPR+G+ ++T    +  A  
Sbjct: 367 --------EFTAASLDSPAALKGLPKADV-------LVVDPPRAGIHESTAQAILTLAPK 411

Query: 317 HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            IL +SC+P +L RD+   S  +T+ R    D FP+T H+E   LL RK
Sbjct: 412 KILAVSCDPTTLARDVKRFSEHYTLTRARAVDMFPHTHHIETVTLLERK 460


>gi|262374293|ref|ZP_06067569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter junii
           SH205]
 gi|262310851|gb|EEY91939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter junii
           SH205]
          Length = 469

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 32/191 (16%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242
           FTQ N+ +N  M++         +G+ +L+L+CG GNFSL LAR      RV+ VE +  
Sbjct: 286 FTQVNSHVNARMVQLACELLDLKEGERVLDLFCGLGNFSLPLARCVGETGRVIGVEASDE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE A  N  AN++            F+Q +         KD   HS+    F  + +DP
Sbjct: 346 MVERATENAQANYLTQASF-------FSQDL--------TKDFSHHSWAKQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           PRSG  +    ++Q  P+     I+Y+SCNP +L RD  +L+   + +++ A+ D F +T
Sbjct: 391 PRSGAYE----VMQYVPNFGAKRIVYVSCNPSTLARDAGVLAQYGYQLKKAAVMDMFTHT 446

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 447 EHVESIALFEK 457


>gi|291524312|emb|CBK89899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium rectale
           DSM 17629]
          Length = 418

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   ++ A++   V+ VE+ + ++  A  N   N + N++     + +F   
Sbjct: 276 VIDAYCGTGTIGIIAAKNAGEVIGVELNRDAIRDAVTNAKRNDIRNIRFYNDDAGKFMVE 335

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           M +  E            +   + +DPPR+G D+A +  V   A   ++Y+SC P++L R
Sbjct: 336 MAQNGE------------KADVVIMDPPRTGSDEAFLSSVVKLAPERVVYVSCGPETLAR 383

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L+   +T++R   +D FPYT H+E  VLL R
Sbjct: 384 DLKYLTKHGYTVKRATPYDCFPYTEHIETVVLLCR 418


>gi|303234202|ref|ZP_07320848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           BVS033A4]
 gi|302494743|gb|EFL54503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           BVS033A4]
          Length = 442

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 20/204 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS 224
           Y  E LT     L +R    SF QPN      +    L     + G ++ +LYCG G  +
Sbjct: 255 YGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYNRALELAGDLSGKNVYDLYCGTGTIA 314

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
            + A+  + V+ VEI   +VE A+ N   N + N K +      F + + +       KD
Sbjct: 315 QIFAKKSESVIGVEIVAEAVEKAQENAKLNGLTNTKFICDDCLNFMEKVEK-------KD 367

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTTHTI 341
           +         + +DPPR G+    +  ++   P   +YISCNP +   DL   +   + I
Sbjct: 368 V---------VVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYEI 418

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           + L  FDQFP T H E  VLL RK
Sbjct: 419 KSLEFFDQFPRTYHCEAVVLLSRK 442


>gi|150391401|ref|YP_001321450.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149951263|gb|ABR49791.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens
           QYMF]
          Length = 451

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 113/233 (48%), Gaps = 25/233 (10%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           +L  +LH     +  + ++++T + + +DY  E L      L ++    SF Q N+ +  
Sbjct: 239 KLVGSLHTFNDNLADMVQSDRTDVLIGQDYFSEELL----GLRFKISAFSFFQTNS-LGA 293

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             L  ++    G   D  + +LYCG G    ++A+   +V+ +EI + +V AA  N   N
Sbjct: 294 EKLYSIVRDFVGQADDQVVFDLYCGTGTIGQIVAQKAKKVIGIEIVEDAVTAANENAKLN 353

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N   +    K      ++ +E N   DI         I +DPPR+G+  A +  +  
Sbjct: 354 GLTNCHFIAGDVK------KKIKELNDKPDI---------IILDPPRAGIHAAALQDIID 398

Query: 315 Y--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +    I+Y+SCNP S+ +DL++L    + ++++   D FP+T H+E   LL +
Sbjct: 399 FNTEKIVYVSCNPKSMVKDLAMLEAHGYQVKKVKCMDMFPHTPHVEAVTLLTK 451


>gi|22298485|ref|NP_681732.1| putative RNA methyltransferase [Thermosynechococcus elongatus BP-1]
 gi|50401571|sp|Q8DKB7|Y942_THEEB RecName: Full=Uncharacterized RNA methyltransferase tlr0942
 gi|22294665|dbj|BAC08494.1| tlr0942 [Thermosynechococcus elongatus BP-1]
          Length = 449

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 34/216 (15%)

Query: 163 DRDYVDERLTVAGRTLIYRQI--------ENSFTQPNAGINVHML----EWVLAATKGIQ 210
           +R + DE   +AGR  ++ ++          +F Q N      ++    +W+  A  G Q
Sbjct: 249 NRIFGDETQVLAGRPYLWEEMAGVRFQIASTTFFQVNTAQAEQLVTTLRDWI--APTG-Q 305

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             L++LYCG G  SL LA     V+ VE+   SV+ A  N   N +NN   V   ++E+ 
Sbjct: 306 ERLVDLYCGVGTLSLPLAGAVAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWL 365

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
                   +++  D+         + +DPPR G D A +  +     P +LY+SC+P +L
Sbjct: 366 P------RYDQAVDV---------LILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATL 410

Query: 329 CRDLSILSTTHT--IERLALFDQFPYTRHMECGVLL 362
            RDL+ L +T T  + ++   D FP T H+E   LL
Sbjct: 411 ARDLAHLCSTGTYQLAKIQPLDMFPQTAHVETIALL 446


>gi|253681766|ref|ZP_04862563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           D str. 1873]
 gi|253561478|gb|EES90930.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           D str. 1873]
          Length = 494

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L+++  +V  VEI + +++ A+ N   N+V+NV+ +   S+E    
Sbjct: 350 VFDAYCGTGTISLFLSKNAKKVYGVEIVEDAIKNAKINAKENNVDNVEFIVGKSEEVIPN 409

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           + ++              +   + VDPPR G D A +  +       I+Y+SC+P +L R
Sbjct: 410 LIKQ------------GIKADVVVVDPPRKGCDKALLDAIGNMRPDRIVYVSCDPGTLAR 457

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL+IL    +  + +   D FP T H+E  VLL +K
Sbjct: 458 DLAILDELGYETKEVQPVDMFPQTGHVENVVLLTKK 493


>gi|146283009|ref|YP_001173162.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas stutzeri
           A1501]
 gi|145571214|gb|ABP80320.1| probable RNA methyltransferase [Pseudomonas stutzeri A1501]
          Length = 450

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 27/230 (11%)

Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR----QIE-----NSFTQPNAGINVHM 198
           +++   RA++ ++ L  D  + +  V G+ L YR     +E       F Q NA +N  M
Sbjct: 234 RLRTFARAHQAQLWLQGDS-EPQADVPGQALGYRLEAWDLELAWRPGDFVQVNAPVNEAM 292

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +   L+      G+ +L+L+CG GNFSL LAR   +V+ VE  +  V  A+ N   N + 
Sbjct: 293 VAQALSWLGASAGERVLDLFCGLGNFSLPLARQGAQVVGVEGVEAMVARAQDNAQRNGLE 352

Query: 258 NVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            V   R   SK              L D       F  + +DPPR G  +    M Q   
Sbjct: 353 QVHFYRADLSKP-------------LADAPWARSGFDAVLLDPPRDGALEIVRQMTQLQA 399

Query: 317 -HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             ++Y+SCNP +L RD   + S    ++R  L D FP T H E   L  R
Sbjct: 400 RRVVYVSCNPATLARDARELASQGFRLKRTGLLDMFPQTAHAEAMALFER 449


>gi|254507467|ref|ZP_05119601.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16]
 gi|219549537|gb|EED26528.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16]
          Length = 439

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 29/190 (15%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N+F Q N  +N  M+E  L        D +L+L+CG GNFSL +A+    V+ VE     
Sbjct: 268 NNFIQVNQDVNQKMVEQALNWLDLTAEDRVLDLFCGLGNFSLPMAKKVRSVIGVEGVDAM 327

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPP 300
           VE A +N   N + N +        F QA       N  +D+    +   +F  I +DP 
Sbjct: 328 VEKATHNAEINQLENAR--------FFQA-------NLEQDMSGQPWATEKFDKILLDPA 372

Query: 301 RSGLDDATVGMVQ-----AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTR 354
           R+G      G+V          ++Y+SCNP +L RD  S+L+    + +L + D FP+T 
Sbjct: 373 RAG----ASGIVDQLSDLGASRVVYVSCNPATLARDSQSLLNQGFQLRKLGMLDMFPHTS 428

Query: 355 HMECGVLLVR 364
           H+E   L V+
Sbjct: 429 HLESMALFVK 438


>gi|256752408|ref|ZP_05493268.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748743|gb|EEU61787.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 452

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 31/236 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           RL   LH +           K  +   +DY+ E L      L ++    SF Q N+    
Sbjct: 237 RLVGVLHTQNDSWSDAVVCEKLNVLYGKDYLIEELL----GLKFKISAFSFFQTNS---- 288

Query: 197 HMLEWVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +  E +    +   GD+      +LY G G   +++A    +V+ +E+ + +V +AR N 
Sbjct: 289 YGAEKLYETVREFAGDVSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENA 348

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVG 310
             N + N   +           ++ +E   + D+         + VDPPRSG++  A   
Sbjct: 349 ELNGLKNCTFIA------GDVSKKLKEIKEMPDV---------VIVDPPRSGINPKALED 393

Query: 311 MVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  ++Y+SCNP+SL RDL I S   + ++++   D FP+T H+EC  L+ +
Sbjct: 394 IIKFNPQKVVYVSCNPESLARDLKIFSEGGYKVDKVKCVDMFPHTYHVECVTLMSK 449


>gi|291535466|emb|CBL08578.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis
           M50/1]
          Length = 565

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E A+ N A N +NN +     ++E   A  
Sbjct: 325 DLYCGIGTISLFLAQKAGKVYGVEIVPQAIEDAKNNAALNGINNAEFFVGKAEEVLPAF- 383

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
               + + KD D        I VDPPR G D   +  M++  P  I+Y+SC+  +L RDL
Sbjct: 384 ----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSATLARDL 439

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366
            +L    + + ++   DQF  T H+E  VLL  +KP
Sbjct: 440 KVLCEGGYELCKVRAVDQFGNTTHVETVVLLSQQKP 475


>gi|332638824|ref|ZP_08417687.1| tRNA (uracil-5-)-methyltransferase related enzyme [Weissella
           cibaria KACC 11862]
          Length = 455

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 110/239 (46%), Gaps = 28/239 (11%)

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI---ENSFTQPNAGI 194
           +R+AL   K  IQ + +     I  +++       V   TL  ++     NSF Q N   
Sbjct: 232 IREALPEVKSIIQNVNQEKTNVILGEKNNTLWGKDVITDTLFGKKFVIGPNSFYQVNPQT 291

Query: 195 NVHMLEWVLAATK-GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              +  + LAA K G+ GD  +++ Y G G  SL +A     VL VE+   +V+ A+ N 
Sbjct: 292 TETL--YQLAADKAGLTGDEEVIDAYSGIGTISLTIADRVKSVLGVEVVPGAVDDAKRNA 349

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DA 307
             N VNN K       E  +A  +  E++          R   IFVDPPR GL     DA
Sbjct: 350 DINGVNNAKF------ELGKAEEKMVEWHEA------GMRPDVIFVDPPRKGLTPELIDA 397

Query: 308 TVGMVQAYPHILYISCNPDSLCRD-LSILSTTHTIER-LALFDQFPYTRHMECGVLLVR 364
             GM       +YISCNP +L RD + IL   + I+  +   DQFP T H+E   + V+
Sbjct: 398 ATGMEPE--KFVYISCNPATLARDTVQILENGYHIQGPVQPIDQFPQTTHIESVTVFVK 454


>gi|169824993|ref|YP_001692604.1| RNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|167831798|dbj|BAG08714.1| RNA methyltransferase [Finegoldia magna ATCC 29328]
          Length = 442

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 44/260 (16%)

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
              Q D  IV+ IYH + D+      +   + LH ++Y                      
Sbjct: 223 FAKQIDNRIVS-IYHTINDNISDAVIVDKLELLHGKEY---------------------- 259

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA 228
            LT     L +R    SF QPN      +    L     + G ++ +LYCG G  + + A
Sbjct: 260 -LTEKINGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGTGTIAQIFA 318

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +  + V+ VEI + +VE A+ N   N + N + +      F + + +       KD+   
Sbjct: 319 KKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFMEKVEK-------KDV--- 368

Query: 289 SYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLA 345
                 + +DPPR G+    +  ++   P   +YISCNP +   DL   +   + I+ L 
Sbjct: 369 ------VVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYEIKSLE 422

Query: 346 LFDQFPYTRHMECGVLLVRK 365
            FDQFP T H E  VLL RK
Sbjct: 423 FFDQFPRTYHCEAVVLLSRK 442


>gi|291522721|emb|CBK81014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus catus
           GD/7]
          Length = 448

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 17/163 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +++ YCG G   ++ A     V+ VE+   SV+ AR N   N++ N+   +  
Sbjct: 297 GLTGKETVVDAYCGIGTIGIIAADKAKSVIGVELNPASVKDARNNARHNNIGNITFYQND 356

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYP-HILYISC 323
           ++ F   M   +E N   D+         IF+DPPR+G   +     +   P  I+YISC
Sbjct: 357 AERFLNEM---QEQNAKADV---------IFMDPPRAGSTHSFMASAISLNPDRIVYISC 404

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           NP++L RDL  L    +T E++   D FP+T HME   LL R+
Sbjct: 405 NPETLARDLEFLKKHQYTAEKIQPVDMFPFTTHMETVCLLTRR 447


>gi|262170599|ref|ZP_06038277.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus MB-451]
 gi|261891675|gb|EEY37661.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus MB-451]
          Length = 440

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 21/189 (11%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           + N F Q N  +N  M+E  L   +  + D +L+L+CG GNF+L L +    V+ VE  +
Sbjct: 266 LPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLTKQAQEVVGVEGVE 325

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVD 298
             V+ A +N   N +NNV         F QA       N  +D+   S+   +F  + +D
Sbjct: 326 EMVQHATHNAKLNQINNVA--------FYQA-------NLEQDMTNASWAQQKFAKVLLD 370

Query: 299 PPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHM 356
           P R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+T H+
Sbjct: 371 PARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHL 430

Query: 357 ECGVLLVRK 365
           E   L V+K
Sbjct: 431 ESMALFVKK 439


>gi|225377937|ref|ZP_03755158.1| hypothetical protein ROSEINA2194_03597 [Roseburia inulinivorans DSM
           16841]
 gi|225210188|gb|EEG92542.1| hypothetical protein ROSEINA2194_03597 [Roseburia inulinivorans DSM
           16841]
          Length = 454

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 24/216 (11%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
             K  +   + Y+++  T+ G T  +R    SF Q N  +   +L        G+ G   
Sbjct: 241 GEKETVIYGKGYIED--TLCGCT--FRISPKSFYQVNP-VQTEILYNKAITYAGLTGKEK 295

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L+ A     V+ VE+ + +V+ A  N   N++ N +     + +F   
Sbjct: 296 VIDAYCGTGTIGLIAASKAKEVIGVELNRDAVKDAVINAKRNNIKNEQFYNADAGKFMVE 355

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           +  +      K +D+       +F+DPPR+G D+A +  V   A   ++Y+SCNP++L R
Sbjct: 356 LAEQN-----KKVDV-------VFMDPPRAGSDEAFLSSVVKLAPKKVVYVSCNPETLAR 403

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364
           DL  L T H  + +     D FP+T+H+EC  LL +
Sbjct: 404 DLKYL-TRHGYQAVECQPCDMFPFTKHVECVCLLSK 438


>gi|153835467|ref|ZP_01988134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01]
 gi|148867978|gb|EDL67175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01]
          Length = 439

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 170/376 (45%), Gaps = 56/376 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y+QQL  K   LRQ+M  F   ++++      E + YR RA   ++ D      + F  +
Sbjct: 98  YDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGESLGYRRRARVSLFVD-KKTRQLHFGFR 156

Query: 67  TKERMRIDYFMPGSLL---INALMIEMMATIRL--EPLLRAKLFQIDYLTSQSDQAIVTL 121
            K+  +I       +L   +N L+ E+ +T++   +P    +L  ++ +   +   I TL
Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKKP---EQLGHVELVLGDNGPCI-TL 212

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV---AGRTL 178
            +   L +      + L     A+++Q  L       ++    D V+  +     AG T+
Sbjct: 213 RHLNKLTEKETNTLVEL-----AKRHQASLYLMPETDQL----DLVEGEVPFYQEAGVTV 263

Query: 179 IYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
            +    N+F Q N  +N  M+    +W+   +      +L+L+CG GNFSL +A+    V
Sbjct: 264 PF--TPNNFIQVNQAVNQKMVAQAVDWLDPKS---DERVLDLFCGLGNFSLPIAKRAKHV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFK 293
           + VE     VE A  N + N +N+ +    +  ++F   +    +F++            
Sbjct: 319 VGVEGVAEMVEKAANNASLNQINSARFYHANLEQDFEGQVWAAEQFDK------------ 366

Query: 294 TIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348
            + +DP R+G    +D  +V   +    I+Y+SCNP +L RD  S+L   + + +L + D
Sbjct: 367 -VLLDPARAGASGIIDQVSVLGAR---RIVYVSCNPATLARDSQSLLEQGYQLTKLGMLD 422

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   L  +
Sbjct: 423 MFPHTSHLESMALFEK 438


>gi|325663161|ref|ZP_08151611.1| hypothetical protein HMPREF0490_02352 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470615|gb|EGC73845.1| hypothetical protein HMPREF0490_02352 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 464

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 153/353 (43%), Gaps = 41/353 (11%)

Query: 39  EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98
           EP HYR +A+F +  D D      F        R    +P +    AL +     I LE 
Sbjct: 125 EPFHYRNKAQFPVGTDKDGKAVTGF-----YAGRTHQIIPNTDC--ALGVSQNQQI-LEE 176

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE---------------CAIRLRDALH 143
           +L   +   +++ + ++Q    L+ H L+   +                 CA +  D L 
Sbjct: 177 ILS--IMNENHIPAYNEQDCSGLVRHILIRYGFTTKEIMVCFVINGDNLPCADKFVDKLS 234

Query: 144 ARKYQIQLIGRANK--TKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
             +    +    NK  T + + ++    + D  +T     + Y+    SF Q N      
Sbjct: 235 QIEGMRSITFSKNKENTNVIMGKEIEVLWGDGYITDYIGNVKYQISPLSFYQVNPVQTEK 294

Query: 198 MLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           + ++ L    G+ G+  + +LYCG G  SL LA+   +V  VEI   ++E A+ N   N 
Sbjct: 295 LYKYALEYA-GLTGEETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKQNAELND 353

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA 314
           + N +     ++E   A       N  K+          I VDPPR G ++A +  MV+ 
Sbjct: 354 MKNAEFFVGKAEEILPAYYE----NYAKEHPGQQAHADVIVVDPPRKGCEEALLETMVKM 409

Query: 315 YP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            P  I+Y+SC+  +L RDL  L    + +E++ + DQFP T H+E  VLL R+
Sbjct: 410 QPDRIVYVSCDSATLARDLKYLCGEGYALEKVQVVDQFPNTVHVETCVLLQRQ 462


>gi|315231713|ref|YP_004072149.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP]
 gi|315184741|gb|ADT84926.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP]
          Length = 417

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 102/198 (51%), Gaps = 28/198 (14%)

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
           +R+++ ERL      ++Y    NSF Q N+   V++++ V    +G +  +L+LY G G 
Sbjct: 236 NREFIKERLD----DVVYLIHPNSFFQTNSYQAVNLVKKVAEFAEGKK--VLDLYSGVGT 289

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F + LA+    V  +EI   +VE AR N   N+V+                    +F   
Sbjct: 290 FGIYLAKKGFEVEGIEINPFAVEMARKNAEINNVD-------------------AKFYVG 330

Query: 283 KDIDIHSY-RFKTIFVDPPRSGLDDATV-GMVQAYPHIL-YISCNPDSLCRDLSILSTTH 339
           +D  + +  ++ TI VDPPR+GL    +  M++  P I+ Y+SCNP +L ++L  L + +
Sbjct: 331 EDKSVGNLGKYDTIVVDPPRAGLHPKLIRKMLKDAPEIIVYVSCNPKTLAKNLEELKSIY 390

Query: 340 TIERLALFDQFPYTRHME 357
            +E +   D FP+T H+E
Sbjct: 391 KVEEIIGLDMFPHTPHVE 408


>gi|223986763|ref|ZP_03636748.1| hypothetical protein HOLDEFILI_04071 [Holdemania filiformis DSM
           12042]
 gi|223961284|gb|EEF65811.1| hypothetical protein HOLDEFILI_04071 [Holdemania filiformis DSM
           12042]
          Length = 484

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 17/161 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM-SSKEFTQ 271
           L+E Y G G  SL+L      ++ +E    +VE A+ N   N   NV+ V   ++KE  +
Sbjct: 302 LVEAYSGVGGISLMLKEKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEMKK 361

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329
            +RR +       ID        + VDPPR+GLD A +  + Q  P  I+YISCNP +L 
Sbjct: 362 IIRRTK-------ID-------AVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLG 407

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++L  L   + ++ +  FD FP T H+E  VLL +  +  H
Sbjct: 408 KNLKELRDLYEVKTVIPFDMFPNTPHVETVVLLSKLKTKKH 448


>gi|220931148|ref|YP_002508056.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168]
 gi|219992458|gb|ACL69061.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168]
          Length = 453

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 13/155 (8%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  +++ YCG G+  + LA     V  +E+   ++E A  N A N +NN   ++   ++ 
Sbjct: 306 QETVVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVEDK 365

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
              +           +D    +   I  DPPR GLD  T+  V     P I+Y+SCNP +
Sbjct: 366 LPEL-----------VDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPAT 414

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           L RDL  +   + I  +   D FP T H+EC V L
Sbjct: 415 LARDLKEIKACYDINEVQPVDLFPQTYHVECVVKL 449


>gi|260771911|ref|ZP_05880829.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio metschnikovii
           CIP 69.14]
 gi|260613203|gb|EEX38404.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio metschnikovii
           CIP 69.14]
          Length = 440

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 42/212 (19%)

Query: 173 VAGRTLIYRQ-------IENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCG 219
           V G T  Y++       +   F Q N  IN  M    +EW+      IQ +  +L+L+CG
Sbjct: 249 VQGETPYYQETGVTMHFLPTHFIQVNQSINQRMVAQAIEWL-----EIQANDRVLDLFCG 303

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRRERE 278
            GNFSL LAR    V+ VE     V  A  N   N +NN    + +  ++ T+A     +
Sbjct: 304 LGNFSLPLARIAHYVVGVEGVDEMVSVASENAHLNQINNSAFYQANLEQDMTKATWAAEK 363

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-----AYPHILYISCNPDSLCRDL- 332
           F++             I +DP R+G      G+V+     +   I+Y+SCNP +L RD  
Sbjct: 364 FDK-------------ILLDPARAG----AAGIVEQLGQLSAQRIVYVSCNPATLARDSQ 406

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           S+L+  + + +LA+ D FP+T H+E   L V+
Sbjct: 407 SLLNQGYHLAKLAMLDMFPHTSHLESMALFVK 438


>gi|253575073|ref|ZP_04852412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845529|gb|EES73538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 333

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 28/197 (14%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFS 224
           GR +IY  I +        SF Q N  I   +L        G+ G   +++ YCG G  S
Sbjct: 142 GREVIYDYIGDVKFAISARSFYQVNP-IQTEVLYGKTVEYAGLTGQETVIDAYCGIGTIS 200

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA+H  RV  VEI K ++E AR N   N +N+V     +S++   A + +        
Sbjct: 201 LFLAQHAKRVYGVEIVKEAIEDARVNAKLNGMNHVTFEVGASEDVIPAWKEQ-------- 252

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL--STTHT 340
                     I VDPPR G D   +  +++  P  ++Y+SCNP +L RDL IL      T
Sbjct: 253 ----GIEADVIVVDPPRKGCDPHLLDTIIKMKPERVVYVSCNPATLARDLRILEDGGYRT 308

Query: 341 IERLALFDQFPYTRHME 357
           +E +   D FP+T H+E
Sbjct: 309 VE-VTPVDMFPHTVHVE 324


>gi|259502578|ref|ZP_05745480.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
           DSM 16041]
 gi|259169468|gb|EEW53963.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
           DSM 16041]
          Length = 479

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 18/165 (10%)

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           + G+ G   +++ YCG G  SL +ARH  +V  VEI   ++E A++N   N + N K V 
Sbjct: 324 SAGLDGSQTVIDAYCGIGTISLAVARHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV- 382

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
                     + E +F + +   +   +   + VDPPR GL ++ +      A   ++Y+
Sbjct: 383 --------VGKAEDQFAKWQAAGL---KPDVVIVDPPRKGLAESLIEATGEMAPQKVIYV 431

Query: 322 SCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP +L RD+   +    H ++ +   DQFP T H+E   +L R
Sbjct: 432 SCNPATLVRDIQRFADVGYHVVKPIQPVDQFPQTTHVESVTVLER 476


>gi|297545003|ref|YP_003677305.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842778|gb|ADH61294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 450

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 31/210 (14%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYC 218
           RDY+ E +      L ++    SF Q N+    +  E +    +   GD+      +LY 
Sbjct: 264 RDYLIEEIL----DLKFKISAFSFFQTNS----YGAEKLYETVREFAGDVSDKIVFDLYS 315

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   +++A    +V+ +E+ + +V +AR N   N + N   +   + + +Q ++  +E
Sbjct: 316 GTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLKNCTFI---AGDVSQKLKEIKE 372

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336
                       +   + VDPPRSG++  A   +V+  P  ++Y+SCNP+SL RDL + S
Sbjct: 373 ------------QPDVVIVDPPRSGINPKALEDIVKFNPQKVVYVSCNPESLARDLKVFS 420

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + ++++   D FPYT H+E  VL+ RK
Sbjct: 421 EGGYKVDKVKCVDMFPYTYHVETVVLMERK 450


>gi|168185623|ref|ZP_02620258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           C str. Eklund]
 gi|169296454|gb|EDS78587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           C str. Eklund]
          Length = 472

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L+++  +V  VEI   ++E A+ N   N+V+N + +   S+E    
Sbjct: 329 VFDAYCGTGTISLFLSKNAKKVYGVEIVDAAIENAKINAEENNVDNAEFIVGKSEEVIPN 388

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           + ++              +   + VDPPR G D A +  +       I+Y+SC+P +L R
Sbjct: 389 LIKQ------------GIKADVVVVDPPRKGCDKALLDAIGNMKPDRIVYVSCDPGTLAR 436

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL+IL    +  + +   D FP T H+EC V L ++
Sbjct: 437 DLAILDELGYETKEVQPVDMFPQTGHVECVVRLNKR 472


>gi|312873424|ref|ZP_07733475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091108|gb|EFQ49501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2052A-d]
          Length = 447

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
              E              +   IFVDPPR GL D  +   V   P  I+YISCNP ++ R
Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL I  +  +  + +   D FP T H+E   LL RK
Sbjct: 412 DLQIFQAAGYDFDCIDPVDMFPQTPHVETIALLTRK 447


>gi|149922893|ref|ZP_01911315.1| RNA methyltransferase, TrmA family protein [Plesiocystis pacifica
           SIR-1]
 gi|149816281|gb|EDM75786.1| RNA methyltransferase, TrmA family protein [Plesiocystis pacifica
           SIR-1]
          Length = 466

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 156/368 (42%), Gaps = 63/368 (17%)

Query: 33  LQIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINA 85
           L+  R+EP  YR RA     W  G D   + F +Q K      E   +     G  LI  
Sbjct: 125 LEPLRAEPWAYRRRARLGAKWVAGKDKVVVGFREQDKRFIANLEGCEVLAGRHGGALIPK 184

Query: 86  LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
           L  E++A + L      K+ Q++   +      VT +  R+L+    E   RLR    A 
Sbjct: 185 LS-ELIAGLSLA----TKIPQVEVSVADDTDGAVTALVFRVLEPPTDEDRERLRAFAAAE 239

Query: 146 KYQIQLIGRANKTKICLDRDYVDERLTVAG------RTLIYRQIE---------NSFTQP 190
             ++ L  +   T + L   + DER    G      R L Y   E           F Q 
Sbjct: 240 GLRVFLQSKGLDT-VAL---FADERGQTEGEGFEDARELSYALPEFELDLRFRPTDFVQV 295

Query: 191 NAGINVHMLE---WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           NA IN  M+     +LA     +  +L+L+CG GNFSL LAR    V  VE     V  A
Sbjct: 296 NAAINRSMIARAVELLALEP--EHRVLDLFCGLGNFSLALARRAGAVFGVEGDAGLVARA 353

Query: 248 RYNIAANHVNNVKI-VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
             N   N ++N +  VR     +TQ    E E+   + +D        + +DPPRSG   
Sbjct: 354 AANAERNGLSNARFEVR---DLYTQVG--ELEWLGGQPVD-------RVLLDPPRSG--- 398

Query: 307 ATVGMVQ--------AYPHILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHM 356
             + +V+          P ++Y++C+P++L RD ++L  TH   +    + D FP+T H+
Sbjct: 399 -ALAIVEHIDRIAWAGKPRLVYVACSPETLARDAAVLVGTHGYRLSAAGVMDMFPHTAHV 457

Query: 357 ECGVLLVR 364
           E   L  R
Sbjct: 458 ESIALFER 465


>gi|260654818|ref|ZP_05860306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi
           E3_33 E1]
 gi|260630533|gb|EEX48727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi
           E3_33 E1]
          Length = 454

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 20/157 (12%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           LELYCG G+ +  LAR    V A EI  P+VE AR N++ N++ NV++ R+S  E     
Sbjct: 305 LELYCGVGSLTAFLARKSRAVTAAEIWPPAVEMARKNMSGNNLTNVEL-RLSPAE----- 358

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
           +   +    +D          + VDPPR+G D   +  +       I+Y+SCNP +L RD
Sbjct: 359 KLPSDLFEGQDC---------LVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARD 409

Query: 332 LSILSTTH---TIERLALFDQFPYTRHMECGVLLVRK 365
            + L +         +  FD FP T H+E   LL RK
Sbjct: 410 AARLQSAGYQLVTSSVRAFDMFPQTSHVETVALLCRK 446


>gi|153931008|ref|YP_001385124.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 19397]
 gi|153937829|ref|YP_001388593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. Hall]
 gi|152927052|gb|ABS32552.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933743|gb|ABS39242.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. Hall]
          Length = 450

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 31/240 (12%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           EC   ++  LH     +  + + +K +I   RDY+ E L      L ++    +F Q N+
Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289

Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  E + +  K   GD     + +LYCG G    ++A    +V+ VE+ + +V+AA
Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 345

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N +NN + +     +  + ++++ +                I +DPPR G+   
Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  V  +    I+Y+SCNP +L  DL  ++   + +E++   D FP+T H+E  V L +
Sbjct: 391 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450


>gi|94502134|ref|ZP_01308635.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
 gi|94425736|gb|EAT10743.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
          Length = 448

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 22/183 (12%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           NSF Q N  +N  M    L+W+          +L+L+ G GNF+L LA+H  RV AVE+ 
Sbjct: 279 NSFIQANGRVNEQMVQTALQWLNVKA---HETVLDLFAGLGNFTLPLAQHAKRVCAVELD 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           K  V   ++N   N ++NV  V++ + +   A+       RL   D+       I +DPP
Sbjct: 336 KKMVADLQHNAQRNELSNVD-VQLGNLDNLDAVE------RLSAADV-------IVLDPP 381

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           R+G       + +    +LY++C P SL RD ++L  +   ++++ + D FP T+H+E  
Sbjct: 382 RAGAAVIMPWVAKQKSRVLYVACEPSSLIRDAAVLVESGFKLDKVVVLDMFPQTKHVETM 441

Query: 360 VLL 362
            L 
Sbjct: 442 ALF 444


>gi|218547699|ref|YP_002381490.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|218355240|emb|CAQ87847.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|324111189|gb|EGC05172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia fergusonii
           B253]
          Length = 432

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N G+N  M    +EW+       Q  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNDGVNQKMVAQAIEWLDIQP---QDRVLDLFCGMGNFTLALATRAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N + NV     + ++               D+    +    F  + +DP
Sbjct: 320 LVEKGRENARENGLANVTFYHENLED---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  ++Y+SCNP +L RD  ++++  +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRVVYVSCNPATLARDSEALINAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFER 431


>gi|313898679|ref|ZP_07832214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
 gi|312956563|gb|EFR38196.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
          Length = 438

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 91/182 (50%), Gaps = 15/182 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF Q N+   V +   + +  K     ++E Y G G  SL L      ++ +E  K +V 
Sbjct: 268 SFFQLNSKQAVQLYRTIASMVKENNELIVEAYSGIGAISLYLKDKAKEIIGIESIKDAVV 327

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N A N   +V  +         A  +    ++ + ID+       + VDPPRSGLD
Sbjct: 328 NANQNAALNGCEHVSFL------CDDAANKLTYLSKKRSIDV-------LVVDPPRSGLD 374

Query: 306 DATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DA +  +      +I+Y+SCNP +L ++L++L + + ++R+   D FP+T H+E  VL+ 
Sbjct: 375 DAMLECILRSKIKNIIYVSCNPATLGKNLAVLCSRYNVDRIQPIDIFPHTPHVESVVLMS 434

Query: 364 RK 365
           RK
Sbjct: 435 RK 436


>gi|258597349|ref|XP_001348019.2| RNA (Uracil-5-)methyltransferase, putative [Plasmodium falciparum
           3D7]
 gi|254832677|gb|AAN35932.2| RNA (Uracil-5-)methyltransferase, putative [Plasmodium falciparum
           3D7]
          Length = 857

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 92/169 (54%), Gaps = 19/169 (11%)

Query: 207 KGIQGDLLELYCGNGNFSL----VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +GI+  + +L CG G  S+    VL  +   ++ ++I + S+ +A  N   N++NN K +
Sbjct: 697 EGIKNYIFDLCCGTGTISICASNVLKSNDVHIIGIDICESSIISANKNAKMNNINNYKFL 756

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHIL 319
               +EF Q          +K+I  ++     I VDPPR+GL ++ + ++ A+     I+
Sbjct: 757 HGRVEEFFQK--------EIKNIQTNNANIICI-VDPPRNGLANSVLNILSAHHLINQII 807

Query: 320 YISCNPDSLCRDLS---ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           Y+SCNP +L  +++    L+ T  I+ +A  D FP+T H+EC   +V+K
Sbjct: 808 YVSCNPITLINNVTNILFLNETLKIKNMAFVDMFPHTFHLECITNIVKK 856


>gi|326391400|ref|ZP_08212937.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992535|gb|EGD50990.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 450

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 31/210 (14%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYC 218
           RDY+ E +      L ++    SF Q N+    +  E +    +   GD+      +LY 
Sbjct: 264 RDYLIEEIL----DLKFKISAFSFFQTNS----YGAEKLYETVREFAGDVSDKIVFDLYS 315

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   +++A    +V+ +E+ + +V +AR N   N + N   +           ++ +E
Sbjct: 316 GTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFIA------GDVSKKLKE 369

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336
              + D+         + VDPPRSG++  A   +++  P  ++Y+SCNP+SL RDL I S
Sbjct: 370 IKEMPDV---------VIVDPPRSGINPKALEDIIKFNPQKVVYVSCNPESLARDLKIFS 420

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + ++++   D FP+T H+E  VL+ RK
Sbjct: 421 EGGYKVDKVKCVDMFPHTHHVETVVLMERK 450


>gi|313887799|ref|ZP_07821479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846142|gb|EFR33523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 443

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 76/153 (49%), Gaps = 18/153 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + VLA    +V+ VEI + +VEAAR N   N ++NV        EF  +
Sbjct: 302 VFDLYSGTGTITQVLAESAKKVIGVEIVEEAVEAARENAKLNGIDNV--------EFIAS 353

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                  + LK +D        I +DPPR G++   +  +  +     LYISCNP +L R
Sbjct: 354 -------DVLKVLDDLDKNPDLIVLDPPREGINPKAIDKIIDFDPEKFLYISCNPVTLVR 406

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           DL +     + IE L + DQFP T H E   LL
Sbjct: 407 DLGVFKERGYEIEELEIVDQFPKTSHAEVITLL 439


>gi|260599136|ref|YP_003211707.1| 23S rRNA m(5)U1939 methyltransferase [Cronobacter turicensis z3032]
 gi|260218313|emb|CBA33301.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Cronobacter turicensis
           z3032]
          Length = 486

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW L    G +  +L+L+CG GNF+L LAR  + V+ VE    
Sbjct: 317 FIQVNDAVNQQMVARALEW-LDIQPGER--VLDLFCGMGNFTLPLARRAESVVGVEGVAA 373

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE   YN   N + NV   + + +E               D+    +    F  + +DP
Sbjct: 374 LVEKGSYNAGLNTLKNVTFFQHNLEE---------------DVTRQPWAQQGFDKVLLDP 418

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +V+  P  ++Y+SCNP +L RD  ++L+  +   RLA+ D FP+T H+E
Sbjct: 419 ARAGAAGVMQHIVKLKPRRVVYVSCNPSTLMRDSEALLAAGYRTGRLAMLDMFPHTSHLE 478

Query: 358 CGVLLVR 364
              L  R
Sbjct: 479 SMALFER 485


>gi|170761366|ref|YP_001788185.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169408355|gb|ACA56766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 450

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 31/240 (12%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           EC   ++  LH     +  + + +K +I   RDY+ E L      L ++    +F Q N+
Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289

Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  E + +  K   GD     + +LYCG G    ++A    +V+ VE+ + +V+AA
Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAA 345

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N +NN + +     +  + ++++ +                I +DPPR G+   
Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  V  +    I+Y+SCNP +L  DL  ++   + +E++   D FP+T H+E  V L +
Sbjct: 391 ALEYVVKFQPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVETVVRLSK 450


>gi|83644637|ref|YP_433072.1| 23S rRNA 5-methyluridine methyltransferase [Hahella chejuensis KCTC
           2396]
 gi|123534038|sp|Q2SL27|RUMA_HAHCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|83632680|gb|ABC28647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Hahella chejuensis
           KCTC 2396]
          Length = 446

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 11/179 (6%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ML   L   +   G+ +L+L+CG GNF+L +AR    V+ VE ++  V 
Sbjct: 273 FTQVNRDINRRMLAQALEWLQPQAGETILDLFCGLGNFTLPIARSAAHVVGVEGSEDMVR 332

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
               N   N ++NV+    +      A  +E +   L+  D        + +DPPRSG +
Sbjct: 333 RGYANAELNGISNVEF-HAADLHLPLAPAKEAKHAWLRTYD-------KVLLDPPRSGAE 384

Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           +    M +     I+Y+SCNP +L RD  IL+T  + + +  + D FP+T H+E   L 
Sbjct: 385 ELAKQMTRFGAKRIVYVSCNPATLARDAGILATQGYKLIKAGVMDMFPHTAHVESMALF 443


>gi|325496175|gb|EGC94034.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii
           ECD227]
          Length = 432

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N G+N  M    +EW+       Q  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 263 FIQVNDGVNQKMVAQAIEWLDIQP---QDRVLDLFCGMGNFTLALATRAASVVGVEGVPA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N + NV     + ++               D+    +    F  + +DP
Sbjct: 320 LVEKGRENARENGLANVTFYHENLED---------------DVTKQPWAKNGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  ++Y+SCNP +L RD  ++++  +TI RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQQIIKLEPIRVVYVSCNPATLARDSEALINAGYTIARLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 425 SMVLFER 431


>gi|153815457|ref|ZP_01968125.1| hypothetical protein RUMTOR_01692 [Ruminococcus torques ATCC 27756]
 gi|145847099|gb|EDK24017.1| hypothetical protein RUMTOR_01692 [Ruminococcus torques ATCC 27756]
          Length = 500

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 17/173 (9%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G++GD  + +LYCG G  SL LA+   +V  VEI  P+++ AR N   N + N +     
Sbjct: 332 GLKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENAQLNGIENAQFFVGK 391

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISC 323
           S+E      ++ E     +   H+     I VDPPR G D   +  + +  P  I+Y+SC
Sbjct: 392 SEEILPKYYKDYEEQHGGE-KAHA---DVIVVDPPRKGCDAKLLDTILKMQPERIVYVSC 447

Query: 324 NPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +L RDL IL         +  + IE+    DQFP T H+E  VL+ +K S
Sbjct: 448 DSATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETIVLIQKKNS 500


>gi|163814586|ref|ZP_02205975.1| hypothetical protein COPEUT_00737 [Coprococcus eutactus ATCC 27759]
 gi|158450221|gb|EDP27216.1| hypothetical protein COPEUT_00737 [Coprococcus eutactus ATCC 27759]
          Length = 507

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 172/391 (43%), Gaps = 54/391 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAF-QVPNLQIFRS-------EPIHYRMRAEFHIWHDGDDLYH 60
            YEQQL  K ++++  +    ++ N++           +P HYR +A+F +  D +    
Sbjct: 135 SYEQQLEYKWNKVKNCLQRIGKMENVEAIMEKPAYGMDDPFHYRNKAQFPVGRDKNGDVV 194

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           I F          D     S  I A + + +  I     +R+   + +++++  ++    
Sbjct: 195 IGFYAGRSH----DIIDTESCAIGAPVNDQIVAI-----VRS-FIEDNHISTYDEETGRG 244

Query: 121 LIYHRLLDDAWRE-----CAIRLRDAL-HARKYQIQLIGRANKTKICLD-------RDYV 167
           L+ H L+   +       C +   + L H+     +L+     T ICL+       R   
Sbjct: 245 LVRHILIRVGFTTKEIMVCLVTNGNKLPHSEILIDELVKIDGMTSICLNVNMENTNRILG 304

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217
           D+ +T+ G++ I   I +        SF Q N  +  ++L         + GD  + ++Y
Sbjct: 305 DKCITLWGQSYITDYIGDIKYQISPLSFYQVNP-VQTNVLYNKALEYADLSGDETVWDMY 363

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  SL LA+   +V  VEI   +++ AR+N   N + N +     ++E    + ++ 
Sbjct: 364 CGIGTISLFLAQKAKKVYGVEIVPQAIDDARHNAEINGITNAEFFVGKAEEVVPDIYKKG 423

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL 335
                 D+         + VDPPR G D   +  +V   P  I+Y+SC+P +L RD+ IL
Sbjct: 424 GDGSHADV---------VVVDPPRKGCDQVLLDTLVHMAPERIVYVSCDPATLARDVKIL 474

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRK 365
               +   ++A+ DQF ++ H+E   LL RK
Sbjct: 475 QEKGYVANKVAVVDQFCHSGHVESVCLLSRK 505


>gi|168179294|ref|ZP_02613958.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
 gi|182669610|gb|EDT81586.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
          Length = 450

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 110/240 (45%), Gaps = 31/240 (12%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           EC   ++  LH     +  + + +K +I   RDY+ E L      L ++    +F Q N+
Sbjct: 234 ECKGEIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS 289

Query: 193 GINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  E + +  K   GD     + +LYCG G    ++A    +V+ VE+ + +V+AA
Sbjct: 290 ----KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPRAKKVIGVELIEEAVKAA 345

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N +NN + +     +  + ++++ +                I +DPPR G+   
Sbjct: 346 NENAKLNGLNNCEFIAGDVAKVIKDVKQKPDI---------------IILDPPRPGVHPV 390

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  V  +    I+Y+SCNP +L  DL  ++   + +E++   D FP+T H+E  V L +
Sbjct: 391 ALEYVVKFEPKEIIYVSCNPKTLVDDLKYLIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450


>gi|193216964|ref|YP_002000206.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma
           arthritidis 158L3-1]
 gi|193002287|gb|ACF07502.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma
           arthritidis 158L3-1]
          Length = 449

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 31/228 (13%)

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLE 200
           +Q++    KTKI        + + +AG+  I  +I+         SF Q N      M +
Sbjct: 238 VQIVCNEEKTKIL-------KLIVLAGKESIEYKIDKLKFNVSSQSFYQVNEKQTNKMYK 290

Query: 201 WVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L +      + +++ + G G   + LA+   +V+ VEI+K +    + N   N +NN+
Sbjct: 291 TLLKSLNLTGSEFIVDAFAGVGTIGMYLAKKAKQVVCVEISKKATLNGKENAKLNSLNNL 350

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317
           + +      F      ++E  R ++ID+       I  DPPR GL+  T+  +  ++   
Sbjct: 351 EFISEDCNRFF-----DKECTRRQNIDV-------IVFDPPREGLNKTTINAIIPKSLKR 398

Query: 318 ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           I YISCNP +L RDL + ++  + IE +  FD FP T H+E   LL +
Sbjct: 399 IAYISCNPRTLVRDLKLFTSKGYKIEFVQPFDMFPQTYHVETLALLSK 446


>gi|238917769|ref|YP_002931286.1| hypothetical protein EUBELI_01850 [Eubacterium eligens ATCC 27750]
 gi|238873129|gb|ACR72839.1| Hypothetical protein EUBELI_01850 [Eubacterium eligens ATCC 27750]
          Length = 484

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 25/176 (14%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + +LYCG G  SL LA++  +V  VEI   ++E A+ N A N ++N +     
Sbjct: 313 GLTGNETVWDLYCGIGTISLFLAKNARKVYGVEIVPQAIEDAKNNAAINGIDNAEFFVGK 372

Query: 266 SKEF--------------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG- 310
           ++E               T A   +RE  R       S     + VDPPR G D++ +  
Sbjct: 373 AEEVVPHFYEEMARLATDTSATEAQREEAR------KSITPDVVVVDPPRKGCDESLLDT 426

Query: 311 MVQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           +V+  P  I+Y+SC+  +L RDL +L+   +   ++   DQF +T H+EC  LLVR
Sbjct: 427 IVKMSPERIVYVSCDSATLARDLGLLAAKGYKTVKVQPVDQFSHTVHVECVCLLVR 482


>gi|91227846|ref|ZP_01262019.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01]
 gi|91188356|gb|EAS74652.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01]
          Length = 439

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 27/189 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N+F Q N G+N  M++  +      + D +L+L+CG GNFSL +A+    V+ VE     
Sbjct: 268 NNFIQVNQGVNQQMVKQAVEWLDPQKSDRVLDLFCGLGNFSLPVAKLAKHVVGVEGVAEM 327

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPP 300
           VE A  N + N +NN         +F  A       N  +D +  ++   RF  + +DP 
Sbjct: 328 VEKATNNASLNQINNA--------QFYHA-------NLEQDFEGQAWAAERFDKVLLDPA 372

Query: 301 RSG----LDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           R+G    +D  +    Q    ++Y+SCNP +L RD  S++   + + +L + D FP+T H
Sbjct: 373 RAGASGIIDQVSELGAQ---RVVYVSCNPATLARDSQSLIEQGYQLTKLGMLDMFPHTSH 429

Query: 356 MECGVLLVR 364
           +E   L  +
Sbjct: 430 LESMALFEK 438


>gi|153814681|ref|ZP_01967349.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756]
 gi|145848175|gb|EDK25093.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756]
          Length = 458

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 23/229 (10%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + ++++T++   +D+  E+L      L ++    SF QPN      + E 
Sbjct: 249 LHILNDSLSDVVKSDETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYET 304

Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V      I    + +L+ G G  S  LA    +V+ VEI + +VEAA+ N   N ++N +
Sbjct: 305 VREYIGDIHDLTVFDLFSGTGTISQALAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCE 364

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318
            +                F  L DI     +   I +DPPR G+    +  +  Y    I
Sbjct: 365 FIAGDV------------FEVLDDI---KEKPDVIILDPPRDGIHPKALPKILDYGVDRI 409

Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
           +YISC   SL RDL ++    +T+E++   DQF  T H+E  VLL RKP
Sbjct: 410 VYISCKMTSLARDLELIQQRGYTVEKMTAVDQFCETVHVETAVLLTRKP 458


>gi|315179124|gb|ADT86038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio furnissii NCTC
           11218]
          Length = 443

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 38/218 (17%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLE 215
           +C D     E    AG T+ +  + ++F Q N  +N  M    L W+       +  +L+
Sbjct: 249 VCGDGAVYGE----AGVTIPF--LPSNFIQVNQQVNQAMVAQALAWLAVTPDTPEERVLD 302

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           L+CG GNFSL LA+   +V+ VE     VE A+ N   N ++NV         F QA   
Sbjct: 303 LFCGLGNFSLPLAKLAKQVVGVEGIDDMVERAKANATRNDLHNV--------SFYQA--- 351

Query: 276 EREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDATVGMVQ-----AYPHILYISCNPDS 327
               N  +D+   ++   +F  + +DP R+G      G+V          ++Y+SCNP +
Sbjct: 352 ----NLEQDMTGETWAAEKFDKVLLDPARAG----AAGIVDQLAALGAKRVVYVSCNPAT 403

Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L RD  S+LS    + +L + D FP+T H+E   L V+
Sbjct: 404 LARDSQSLLSQGFQLVKLGMLDMFPHTSHLESMALFVK 441


>gi|283786672|ref|YP_003366537.1| 23s rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282950126|emb|CBG89762.1| 23s rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 432

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 21/185 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N G+N  M+   LA  +    D +L+L+CG GNF+L LA     V+ VE     VE
Sbjct: 263 FIQVNEGVNQQMVARALAWLEVQPTDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVE 322

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
             + N   N ++NV     + +E               D+    +    F  + +DP R+
Sbjct: 323 KGQENARQNELHNVTFFHANLEE---------------DVTRQPWAKSGFDKVLLDPARA 367

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           G       +++  P  I+Y+SCNP +L RD   +L   + I+RLA+ D FP+T H+E   
Sbjct: 368 GAAGVMQHIIKLQPRRIVYVSCNPATLARDSEQLLRAGYQIQRLAMLDMFPHTGHLESMA 427

Query: 361 LLVRK 365
           L   K
Sbjct: 428 LFEHK 432


>gi|269965227|ref|ZP_06179361.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B]
 gi|269830213|gb|EEZ84440.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B]
          Length = 439

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 27/189 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N+F Q N G+N  M++  +      + D +L+L+CG GNFSL +A+    V+ VE     
Sbjct: 268 NNFIQVNQGVNQQMVKQAVEWLDPQKSDRVLDLFCGLGNFSLPVAKLAKHVVGVEGVAEM 327

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPP 300
           VE A  N + N +NN         +F  A       N  +D +  ++   RF  + +DP 
Sbjct: 328 VEKATNNASLNQINNA--------QFYHA-------NLEQDFEGQAWAAERFDKVLLDPA 372

Query: 301 RSG----LDDATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           R+G    +D  +    Q    ++Y+SCNP +L RD  S++   + + +L + D FP+T H
Sbjct: 373 RAGASGIIDQVSELGAQ---RVVYVSCNPATLARDSQSLIEQGYKLTKLGMLDMFPHTSH 429

Query: 356 MECGVLLVR 364
           +E   L  +
Sbjct: 430 LESMALFEK 438


>gi|258646651|ref|ZP_05734120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister invisus DSM
           15470]
 gi|260404073|gb|EEW97620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister invisus DSM
           15470]
          Length = 468

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   RV+ +EI KP++E A+ N   NH+ N +     + +    
Sbjct: 323 VIDAYCGTGTISLCLAKKAKRVIGIEIVKPAIEDAKKNAKKNHMENTEFYAADAGKLMPQ 382

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328
           + R+     + D+         I +DP R+G  +    A  GM      I+Y+SCNP + 
Sbjct: 383 LYRQ---GLVPDV---------IVMDPVRAGCSEEVLKAAAGMNPK--RIVYVSCNPATF 428

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD  IL S  + I+ +   D FP T H+E  VL+ R
Sbjct: 429 ARDAKILKSEGYEIKEVQPVDMFPQTMHVETVVLMSR 465


>gi|227543578|ref|ZP_03973627.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           reuteri CF48-3A]
 gi|300909393|ref|ZP_07126854.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           SD2112]
 gi|227186418|gb|EEI66489.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           reuteri CF48-3A]
 gi|300893258|gb|EFK86617.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           SD2112]
          Length = 478

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 18/164 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ YCG G  SL +A+H  +V  VEI   ++E A++N   N + N K V   
Sbjct: 326 GLDGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNSIKNAKFV--- 382

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
                   + E +F + +   +   +   + VDPPR GL ++ +          ++Y+SC
Sbjct: 383 ------VGKAEEQFAKWQAAGL---KPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSC 433

Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +L RD+   +    H  + +   DQFP T H+E   +L RK
Sbjct: 434 NPATLVRDIKRFADQGYHVTKPIQPVDQFPQTTHVESVTVLERK 477


>gi|240146924|ref|ZP_04745525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
 gi|257200907|gb|EEU99191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
          Length = 565

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 9/156 (5%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E A+ N A N +NN +     ++E   A  
Sbjct: 325 DLYCGIGTISLFLAQKAGKVYGVEIIPQAIEDAKNNAALNGINNAEFFVGKAEEVLPAF- 383

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
               + + KD D        I VDPPR G D   +  M++  P  I+Y+SC+  +L RDL
Sbjct: 384 ----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSATLARDL 439

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366
            +L    + + ++   DQF  T H+E  VLL  +KP
Sbjct: 440 KVLCEGGYELCKVRAVDQFGNTTHVETVVLLSQQKP 475


>gi|295400536|ref|ZP_06810514.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294977439|gb|EFG53039.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 459

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VE+   ++E A+ N A N + NV+     ++     
Sbjct: 314 VIDAYCGIGTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFAVGEAEAVIPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             ++              R   I VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 374 WYKQ------------GIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLAR 421

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL IL      T+E +   D FP+T H+EC  L+ R
Sbjct: 422 DLRILEDGGYQTLE-VQPVDMFPHTAHVECCALIKR 456


>gi|238920899|ref|YP_002934414.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|259495630|sp|C5B8X6|RUMA_EDWI9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|238870468|gb|ACR70179.1| 23S rRNA (uracil-5-)-methyltransferase RumA, putative [Edwardsiella
           ictaluri 93-146]
          Length = 438

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 25/190 (13%)

Query: 180 YRQIENS--------FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
           Y QI+ S        F Q NA +N  M+   LA    ++ D  +L+L+CG GNF+L LAR
Sbjct: 252 YYQIDGSRLDFNPQDFIQVNAAVNAQMVGQALAWLD-VRADERVLDLFCGMGNFTLPLAR 310

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              RV+ VE     V  A+ N   N ++NV+        F Q +  E +  R       S
Sbjct: 311 LALRVVGVEGVPGLVATAQNNARNNGLSNVEF-------FHQNL--EEDVTRQA---WAS 358

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALF 347
             F  I +DP R+G       +V+  P  ++Y+SCNP +L RD  ++L   + + RL + 
Sbjct: 359 QGFDKILLDPARAGAPGVMQHIVRLAPRRVVYVSCNPTTLARDSQTLLQGGYRLTRLCML 418

Query: 348 DQFPYTRHME 357
           D FP+T H+E
Sbjct: 419 DMFPHTGHLE 428


>gi|330446947|ref|ZP_08310598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491138|dbj|GAA05095.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 439

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 30/206 (14%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGN 220
           D  D RLT + +          F Q N  +N  M+E    W+       Q  +L+L+CG 
Sbjct: 257 DIEDVRLTFSPK---------DFIQVNRAVNQKMVEQAINWLDVQP---QDRVLDLFCGL 304

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNFSL LAR    V+ VE     V  A  N  AN ++N    + +  E    +   +E  
Sbjct: 305 GNFSLPLARSAKAVVGVEGVDEMVARATANAVANRLDNATFYQANLDEDVTKLVWAQE-- 362

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTT 338
                     +F  I +DP R+G       +V   P  ++Y+SCNP +L RD  I L   
Sbjct: 363 ----------QFDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPATLARDSQILLQQG 412

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + + RL + D FP+T H+E   L V+
Sbjct: 413 YKLARLGMMDMFPHTGHLESMALFVK 438


>gi|298242700|ref|ZP_06966507.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM
           44963]
 gi|297555754|gb|EFH89618.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM
           44963]
          Length = 442

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 34/214 (15%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--------AATKGIQGDLLEL 216
           + ++E+L   G+  I+R   +SF Q N      M+  VL        A     Q  +++ 
Sbjct: 245 ETIEEKL--GGK--IFRIRPSSFFQTNTPQAEKMVRMVLDGLLAHRPAEKDPAQLTIVDA 300

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G F+L++A HF R++A+E +  ++  A +N      NN++I++   ++    +   
Sbjct: 301 YCGVGTFALLMAHHFGRIIAIEESPSAIRDAHWN--TRDTNNIEILKGKVEDVLPGL--- 355

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                       S +     +DPPR+G     +  +  YP   ++Y+SC P +L RDL +
Sbjct: 356 ------------SAQVDGFVIDPPRAGCQPVVLETLLRYPVERVVYVSCEPSTLARDLDV 403

Query: 335 LS---TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L     T+ +  +   D FP T H+EC  +L R 
Sbjct: 404 LCHGDETYQLVSVQPLDMFPQTAHIECVAVLERN 437


>gi|212634201|ref|YP_002310726.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella
           piezotolerans WP3]
 gi|226725392|sp|B8CJP2|RUMA_SHEPW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|212555685|gb|ACJ28139.1| RNA methyltransferase, TrmA family [Shewanella piezotolerans WP3]
          Length = 445

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 162/375 (43%), Gaps = 56/375 (14%)

Query: 11  EQQLAEKVDRLRQMMLAF-QVPNLQIFRS---EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q A K   L++++  F Q    Q+  +    P HYR RA    W          FD++
Sbjct: 100 ESQRAHKAKALQELVAKFAQTTASQVCETLSDSPWHYRRRARLATW----------FDKK 149

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ-SDQAIVTLIYHR 125
           TK  + + +    S    + ++E+ + + L   L A + ++ +L +Q S +  +  +   
Sbjct: 150 TK-HISLGFRASSS----SDVVEIQSCVVLAKPLSALIPELAFLLNQLSGKKALGHVELT 204

Query: 126 LLDDAWRECAIRLRDALHARKYQ-IQLIGRANKTKICL-DRDYVDERLTVAGRTLIY--- 180
           L D+      +R+  AL  +  Q +   G ++   + L D D   E L+  G+   Y   
Sbjct: 205 LADNGIF-VVLRVTKALSDKDRQRLAEFGASHSLNMLLQDDDANTESLSGHGQQPFYSFN 263

Query: 181 ------RQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
                 +    +F Q NA +N  M+    +W+          +L+L+CG GNFSL LA+ 
Sbjct: 264 DSDAELKFSAGNFIQVNASVNQAMVNQAVDWLAPQA---NERVLDLFCGIGNFSLPLAKS 320

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHS 289
              V+ VE     VE A  N     ++ V       S + +Q          L  +D   
Sbjct: 321 GAEVIGVEGVPAMVEQATVNAKGAALDKVSFYHADLSADLSQQ-------PWLGKVD--- 370

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRDLS-ILSTTHTIERLALF 347
                + +DP R+G  ++ + + +  P  L Y+SCNP SL RD   IL   + + ++A+ 
Sbjct: 371 ----KMLIDPARAGAYESMLSLKKLKPQALVYVSCNPASLARDSEVILKQGYRLTKIAMV 426

Query: 348 DQFPYTRHMECGVLL 362
           D FP T H+E   L 
Sbjct: 427 DMFPQTHHLESMALF 441


>gi|160903249|ref|YP_001568830.1| RNA methyltransferase [Petrotoga mobilis SJ95]
 gi|160360893|gb|ABX32507.1| RNA methyltransferase, TrmA family [Petrotoga mobilis SJ95]
          Length = 446

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 21/183 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKG-IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           SF Q N  +   +L  +L   K   Q D  +L+LY G G FS+  +  F  + +VE +K 
Sbjct: 275 SFFQNNYNVTQKLLRHILEYFKSNAQKDATMLDLYSGVGLFSIYFSPLFKHIESVETSKV 334

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV+AA  N   N   NV  +  SSK +   M+              S RF  + +DPPR 
Sbjct: 335 SVKAAIANSHINFTKNVNFILASSKPY--LMKNS------------SKRFDYVILDPPRK 380

Query: 303 GLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME-C 358
           GL+   + ++   A   I+Y+SC+P +  RDL++ +    T++ +  FD FP++ H+E  
Sbjct: 381 GLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFTKNGFTLKSVQPFDMFPHSYHIENV 440

Query: 359 GVL 361
           G+L
Sbjct: 441 GIL 443


>gi|312112373|ref|YP_003990689.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1]
 gi|311217474|gb|ADP76078.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1]
          Length = 459

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VE+   ++E A+ N A N + NV+     ++     
Sbjct: 314 VIDAYCGIGTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFAVGEAEAVIPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             ++              R   I VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 374 WYKQ------------GIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLAR 421

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL IL      T+E +   D FP+T H+EC  L+ R
Sbjct: 422 DLRILEDGGYQTLE-VQPVDMFPHTAHVECCALIKR 456


>gi|291541326|emb|CBL14437.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 621

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 19/225 (8%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
             K  +   + Y+++  T+ G T  +R    SF Q N  +   +L        G+ G   
Sbjct: 297 GEKETVIYGKGYIED--TLCGCT--FRISPKSFYQVNP-VQTEILYTKAIEYAGLTGKER 351

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L+ A     V++VE+ + +V  A  N   N + NV+     + +F   
Sbjct: 352 IVDAYCGIGTIGLIAASKAKEVISVELNRDAVRDAVTNAKRNDIKNVQFYNADAGQFMVE 411

Query: 273 M---RREREFNRLKDIDIHSYR------FKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
           M   R +++ N++ D      +         +F+DPPR+G D+A +  V   A   ++YI
Sbjct: 412 MAEYRADQKKNQVPDATKSGKKATPDGNVDVVFMDPPRAGSDEAFLSSVIRLAPKRVVYI 471

Query: 322 SCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP++L RDL  L+   +  +     D FP+T+H+E  VLL  K
Sbjct: 472 SCNPETLARDLKYLTKHGYQAKECQPVDLFPWTKHVETVVLLSHK 516


>gi|15836418|ref|NP_300942.1| rRNA methyltransferse [Chlamydophila pneumoniae J138]
 gi|16752151|ref|NP_445518.1| RNA methyltransferase [Chlamydophila pneumoniae AR39]
 gi|33242245|ref|NP_877186.1| protein Hom1 [Chlamydophila pneumoniae TW-183]
 gi|12644494|sp|Q9Z721|Y885_CHLPN RecName: Full=Uncharacterized RNA methyltransferase
           CPn_0885/CP_0981/CPj0885/CpB0914
 gi|8163534|gb|AAF73721.1| RNA methyltransferase, TrmA family [Chlamydophila pneumoniae AR39]
 gi|8979259|dbj|BAA99093.1| rRNA methyltransferse [Chlamydophila pneumoniae J138]
 gi|33236756|gb|AAP98843.1| protein Hom1 [Chlamydophila pneumoniae TW-183]
          Length = 401

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 119/254 (46%), Gaps = 36/254 (14%)

Query: 129 DAWRECAIRLRDALH------ARKYQIQLIGRANKTKICLDRDYVDERLTVA--GRTLIY 180
           D W+E  I L  +L+        K   + I    +TK+      + ++L++   G +  +
Sbjct: 164 DEWKE--ILLSSSLNIASIYWEEKVAARGISTYYETKLLYGAPSIQQKLSLPSDGNSASF 221

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLA 236
                SF QP       ++E    A + I  +    LL+LYCG G   ++L+ +   V+ 
Sbjct: 222 SLRPRSFFQPQITQAAKIIE---TAKEFINPEGSETLLDLYCGAGTIGIMLSPYVKNVIG 278

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VEI   +V +A+ NI AN+  +   V +   E  +A  +  E  +  D+         I 
Sbjct: 279 VEIIPDAVASAQENIKANNKEDCVEVYL---EDAKAFCKRNENCKAPDV---------II 326

Query: 297 VDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL---CRDLSILSTTHTIERLALFDQFP 351
           +DPPR G+    +  +     P I+YISCNP +    C DL  +S  + I+++   DQFP
Sbjct: 327 IDPPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQECADL--ISGGYRIKKMQPIDQFP 384

Query: 352 YTRHMECGVLLVRK 365
           Y+ H+E  +LL R+
Sbjct: 385 YSTHLENIILLERE 398


>gi|167464623|ref|ZP_02329712.1| TRNA (uracil-5-)-methyltransferase-related protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322381560|ref|ZP_08055534.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154454|gb|EFX46756.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 550

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 28/213 (13%)

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           + DE   + GR +IY  I +        SF Q N  +   +L        G+ G   +++
Sbjct: 349 FGDETKVLWGREVIYDYIGDVKFAISPRSFYQVNP-VQTEVLYRKTLEYAGLIGKETVVD 407

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  SL LA+H  +V  VEI   ++E A+ N   N V+N +     ++E     +R
Sbjct: 408 AYCGIGTISLFLAKHARKVYGVEIVPEAIEDAKRNAELNGVSNAEFAAGKAEEVLPGWQR 467

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333
                          R   I VDPPR G D   +  + +  P  ++Y+SCN  +L RDL 
Sbjct: 468 A------------GVRPDVIVVDPPRKGCDAVLLDTILRLRPERVVYVSCNASTLARDLR 515

Query: 334 IL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L      T+E +   D FP+T H+EC VL+ R
Sbjct: 516 VLEDGGYRTVE-VQPVDMFPHTVHVECVVLMSR 547


>gi|319896666|ref|YP_004134859.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Haemophilus influenzae
           F3031]
 gi|317432168|emb|CBY80519.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           F3031]
          Length = 438

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNRVLNERMVNTALDWLELNQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N   N + N++  +    + F +     + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKAEKILYVSCNPATLVRDAGILCDFGYKIEKSAVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|15618794|ref|NP_225080.1| rRNA methyltransferse [Chlamydophila pneumoniae CWL029]
 gi|4377204|gb|AAD19023.1| rRNA Methyltransferse [Chlamydophila pneumoniae CWL029]
          Length = 401

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 32/252 (12%)

Query: 129 DAWRECAIRLRDALH------ARKYQIQLIGRANKTKICLDRDYVDERLTVA--GRTLIY 180
           D W+E  I L  +L+        K   + I    +TK+      + ++L++   G +  +
Sbjct: 164 DEWKE--ILLSSSLNIASIYWEEKVAARGISTYYETKLLYGAPSIQQKLSLPSDGNSASF 221

Query: 181 RQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                SF QP       ++E        +G +  LL+LYCG G   ++L+ +   V+ VE
Sbjct: 222 SLRPRSFFQPQITQAAKIIETAKEFINPEGSE-TLLDLYCGAGTIGIMLSPYVKNVIGVE 280

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I   +V +A+ NI AN+  +   V +   E  +A  +  E  +  D+         I +D
Sbjct: 281 IIPDAVASAQENIKANNKEDCVEVYL---EDAKAFCKRNENCKAPDV---------IIID 328

Query: 299 PPRSGLDDATVGMVQ--AYPHILYISCNPDSL---CRDLSILSTTHTIERLALFDQFPYT 353
           PPR G+    +  +     P I+YISCNP +    C DL  +S  + I+++   DQFPY+
Sbjct: 329 PPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQECADL--ISGGYRIKKMQPIDQFPYS 386

Query: 354 RHMECGVLLVRK 365
            H+E  +LL R+
Sbjct: 387 THLENIILLERE 398


>gi|257869135|ref|ZP_05648788.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257803299|gb|EEV32121.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 458

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 159/387 (41%), Gaps = 53/387 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD----- 57
           YE+QL  K D L+Q +  F+    Q       I   EP HYR +A+F + +D        
Sbjct: 92  YEKQLDFKKDLLKQALTKFKPKGYQKYILKDTIGMEEPWHYRNKAQFQLRYDTKSKRIEA 151

Query: 58  -LYHI-------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
            LY +       + D   +E+   D       L+N   + +    +   +LR  + ++  
Sbjct: 152 GLYEMDSHRLVAIDDCLVQEKATQDVINGLVQLLNKYQLPIYDERKNSGILRTLMVRVGR 211

Query: 110 LTSQSDQAIVTLIYHRLLDDAW-RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
            T +     +T        +A  RE   R+   +      I    ++ KT + +     D
Sbjct: 212 ATGEVQVVFITNSSKLPQKNALIREINQRMPQVVS-----IMQNVQSKKTSVIMG----D 262

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
           E L + G+  I  +++         +F Q N      + +  + A    + + +++ YCG
Sbjct: 263 ETLHLWGKEAIEERLQELTFDLSPRAFFQLNPQQTSILYDEAIKALALTKNETVVDAYCG 322

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L LA+H   V  ++I   ++E A+ N      NN      ++++           
Sbjct: 323 VGTIGLSLAKHAKEVRGMDIIPQAIENAKENARRIQANNTHYETGTAEDL---------- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
             L       +R  +I VDPPR+GLDD  +  + A P   ++YISCN  +L RDL  L++
Sbjct: 373 --LPKWFAAGFRPDSIVVDPPRTGLDDHLLQALVAQPPKKMVYISCNVSTLARDLVKLAS 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
              IE L   D FP T   E  V L R
Sbjct: 431 VFKIEYLQSVDMFPQTARCEVVVKLTR 457


>gi|256544972|ref|ZP_05472341.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399339|gb|EEU12947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus vaginalis
           ATCC 51170]
          Length = 455

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 122/267 (45%), Gaps = 43/267 (16%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +R  LF  + L +++   IV+ IYH + D         L DA+           + +  +
Sbjct: 225 MRRDLFAHNLLNAKTKGRIVS-IYHVINDS--------LSDAV-----------KVDSIE 264

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +   + Y++E++      L ++    SF QPN      + +  +  A      ++L+LY 
Sbjct: 265 LLFGKKYIEEKMN----DLKFQISPFSFFQPNVYTAEKIYQKAIELANVDKNKNVLDLYS 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  + + A+  ++ + +EI + +VE A  N   N + N+  +                
Sbjct: 321 GTGTITQLFAKSANKAMGIEIIEEAVEKAFDNAKENEIENINFIAG-------------- 366

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDLSI-L 335
            + L+ ID+   ++  + +DPPR G+   A   ++   P   +YISCNP +  RDL I +
Sbjct: 367 -DVLEKIDLVKGKYDIVVIDPPREGIHPKAIKKIIDISPEEFVYISCNPKTQVRDLEIFI 425

Query: 336 STTHTIERLALFDQFPYTRHMECGVLL 362
              + I++   FDQFP +RH+E   L+
Sbjct: 426 KNGYKIKKYQAFDQFPRSRHVETIALI 452


>gi|160933690|ref|ZP_02081078.1| hypothetical protein CLOLEP_02551 [Clostridium leptum DSM 753]
 gi|156867567|gb|EDO60939.1| hypothetical protein CLOLEP_02551 [Clostridium leptum DSM 753]
          Length = 460

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G   + +A    +V+ VE+   ++E A+ N   N V N++ +   S +  Q 
Sbjct: 311 VLDLYCGTGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDSAQAVQM 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
           +R+  E            R   + VDPPR G     +  +V+  P  I+Y+SC+P +L R
Sbjct: 371 LRKRGE------------RPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           DL +L    + ++ LA  D FP T H+E   LL
Sbjct: 419 DLKLLVKAGYCLQTLAPVDLFPRTAHVETVALL 451


>gi|197284125|ref|YP_002149997.1| 23S rRNA 5-methyluridine methyltransferase [Proteus mirabilis
           HI4320]
 gi|227358009|ref|ZP_03842351.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|226725384|sp|B4EUF2|RUMA_PROMH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|194681612|emb|CAR40617.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis HI4320]
 gi|227161744|gb|EEI46776.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 441

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  IN  M+   +A       D +L+L+CG GNF+L +A+  D+V+ VE     V 
Sbjct: 272 FIQVNDEINHKMVAQAIAWLDLSPNDRVLDLFCGMGNFTLPMAKRVDKVVGVEGVPALVA 331

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A+ N   N ++NV+      S +F+     +  FN+             + +DP R+G 
Sbjct: 332 MAKKNAELNQLDNVQFWHADLSADFSAMPWAQEGFNK-------------VLLDPARAGA 378

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
                 +V  +   I+Y+SCNP +L RD  I L + + + +L + D FP T H+E   L 
Sbjct: 379 AQVMSHIVTLSAEKIVYVSCNPTTLARDSKILLDSGYQLTQLRMLDMFPQTGHLESMALF 438

Query: 363 VRK 365
           +RK
Sbjct: 439 IRK 441


>gi|327481361|gb|AEA84671.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas stutzeri
           DSM 4166]
          Length = 450

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 147/367 (40%), Gaps = 53/367 (14%)

Query: 21  LRQMMLAFQVPNLQIFR----SEPI-----HYRMRAEFHI-WHDGDDLYHIMF-DQQTKE 69
           L+Q  L  Q+  L   +    +EP+      YR RA   + WH  D    + F    +++
Sbjct: 113 LKQRTLGEQLARLAELKPERWAEPLTGPAFGYRRRARLAVRWHTRDKRLEVGFRSTASQD 172

Query: 70  RMRID----YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + ID       P   L+  L+  +    + + +   +LF        S  A   LI H 
Sbjct: 173 IVAIDQCPVLVQPLQTLLPGLLEALHGLTKPQAIGHVELF--------SGTAEAVLIRHT 224

Query: 126 L----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
                +D A      RLR    A + Q+ L G   + +  +    +  RL      L +R
Sbjct: 225 APLPEIDLA------RLRTFTRAHQAQLWLQGE-GEPQADVPGQALGYRLEAWDLELAWR 277

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIA 240
                F Q NA +N  M+   L+      G+ +L+L+CG GNFSL L R   +V+ VE  
Sbjct: 278 --PGDFVQVNAPVNEAMVAQALSWLGASAGERVLDLFCGLGNFSLPLGRQGAQVVGVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  V  A+ N   N +  V   R   SK              L D       F  + +DP
Sbjct: 336 EAMVARAQDNAQRNGLEQVHFYRADLSKP-------------LADAPWARSGFDAVLLDP 382

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
           PR G  +    M Q     ++Y+SCNP +L RD   + S    ++R  L D FP T H E
Sbjct: 383 PRDGALEIVRQMTQLQARRVVYVSCNPATLARDARELASQGFRLKRAGLLDMFPQTAHAE 442

Query: 358 CGVLLVR 364
              L  R
Sbjct: 443 AMALFER 449


>gi|189485521|ref|YP_001956462.1| putative RNA methyltransferase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287480|dbj|BAG14001.1| putative RNA methyltransferase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 449

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 20/213 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDL 213
           A++  +   + ++ ERL + G+   +     SF Q N+    +   E +          L
Sbjct: 250 ADRLTLMCGKPFITERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILRLLNPSKYTVL 309

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LYCG G   + +A +  RV+ VE    +++ A+ N  AN+V N +     ++++ +  
Sbjct: 310 LDLYCGTGAIGISMAHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASDAEDWIKEN 369

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
           +                 F  + VDPPRSGL    +  +       I+Y+SCNP +L RD
Sbjct: 370 KS---------------CFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARD 414

Query: 332 LSILS--TTHTIERLALFDQFPYTRHMECGVLL 362
           L +++  +   I+ +   D FP T H+E  VLL
Sbjct: 415 LQLITENSKCKIKEIIPVDMFPQTYHIETVVLL 447


>gi|331089004|ref|ZP_08337911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330406456|gb|EGG85969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 500

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 87/173 (50%), Gaps = 17/173 (9%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G++GD  + +LYCG G  SL LA+   +V  VEI  P+++ AR N   N + N +     
Sbjct: 332 GLKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENALLNGIENAQFFVGK 391

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISC 323
           S+E      ++ E     +   H+     I VDPPR G D   +  + +  P  I+Y+SC
Sbjct: 392 SEEILPKYYKDYEEQHGGE-KAHA---DVIVVDPPRKGCDAKLLDTILKMQPERIVYVSC 447

Query: 324 NPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +L RDL IL         +  + IE+    DQFP T H+E  VL+ +K S
Sbjct: 448 DSATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETIVLIQKKNS 500


>gi|327438698|dbj|BAK15063.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
          Length = 458

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 164/387 (42%), Gaps = 52/387 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAF-----QVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           YE QL  K D + Q    +     Q   ++  I    P HYR +++F +  +G  +Y  +
Sbjct: 92  YEAQLMNKRDIVVQAFEKYAKEIGQTAEIRPTIGMDNPWHYRNKSQFQVRKEGKRVYAGL 151

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL--FQIDYLTSQSDQAIVT 120
           F + T + + I          N  +++   T ++    R  L    I     ++   +V 
Sbjct: 152 FTEGTNQLLNI----------NDCLVQHPVTSKITVATRKILQKLNIPIYDGKTLNGLVR 201

Query: 121 LIYHR--LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA---- 174
            I  R  +     + C +  R  L  ++  I+ I + + + + + ++   E+ ++     
Sbjct: 202 TIVVRTGMRSGETQVCLVTTRRELPHKEELIERIKKIDPSIVSITQNVNREKTSLIFGPD 261

Query: 175 -----GRTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
                G+  I+ ++          +F Q N    VH+  E   AA    + ++++ YCG 
Sbjct: 262 TFILDGKEAIHEKLGEFAFDLSTRAFFQLNPEQTVHLYNEIKKAAALTGKENVVDAYCGV 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + LA     V  ++    ++  A+YN   N  +N++ VR       + + R  +  
Sbjct: 322 GTIGMWLAEGAREVRGMDNVDEAIADAKYNARTN--DNLQHVRFFPGSADKWLFRWSK-- 377

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHI-LYISCNPDSLCRDLSILSTT 338
                    YR   I VDPPR+GL+   +  V +  P + +Y SCNP +L RDL  LS +
Sbjct: 378 -------EDYRPDVICVDPPRTGLEPGFIRTVLKIKPKLFVYTSCNPSTLARDLKELSKS 430

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP T  +EC V L  K
Sbjct: 431 YNVEYIQPVDMFPQTAQVECVVKLTLK 457


>gi|289578782|ref|YP_003477409.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
           Ab9]
 gi|289528495|gb|ADD02847.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
           Ab9]
          Length = 450

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 31/210 (14%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYC 218
           RDY+ E +      L ++    SF Q N+    +  E +    +   GD+      +LY 
Sbjct: 264 RDYLIEEIL----DLKFKISAFSFFQTNS----YGAEKLYETVREFAGDVSDKIVFDLYS 315

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   +++A    +V+ +E+ + +V +AR N   N + N   +   + + +Q ++  +E
Sbjct: 316 GTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLKNCTFI---AGDVSQKLKEIKE 372

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336
                       +   + VDPPRSG++  A   +V+  P  ++Y+SCNP+SL RDL + S
Sbjct: 373 ------------QPDVVIVDPPRSGINPKALKDIVKFNPQKVVYVSCNPESLARDLKVFS 420

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + ++++   D FPYT H+E  VL+ +K
Sbjct: 421 EGGYKVDKVKCVDMFPYTYHVETVVLMEKK 450


>gi|125974255|ref|YP_001038165.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|125714480|gb|ABN52972.1| 23S rRNA m(5)U-1939 methyltransferase [Clostridium thermocellum
           ATCC 27405]
          Length = 453

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G  SL L++   R+  VE+ + +V+ A  N   N V N + +   +++    
Sbjct: 310 VFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPE 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M  +              R   + VDPPR G D+A +  +V   P  I+Y+SCNP +L R
Sbjct: 370 MYEK------------GVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLAR 417

Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+     +  +   D FP+T H+EC  L+ +K
Sbjct: 418 DLKYLAEGGFEVREVQPVDMFPWTYHVECVALIEKK 453


>gi|71734365|ref|YP_275859.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|91207807|sp|Q48FH7|RUMA_PSE14 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|71554918|gb|AAZ34129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 451

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 19/202 (9%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D +  RL      L +R     F Q NA +N  M+E  L      + + +++L+CG GNF
Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282
           +L LA     V+AVE     VE A  N  +N ++NV+  +   S+  T A          
Sbjct: 319 ALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340
              D  +  F T+ +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + 
Sbjct: 369 ---DWAAEGFSTVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           ++R  + D FP T H+E   L 
Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447


>gi|226945755|ref|YP_002800828.1| 23S rRNA 5-methyluridine methyltransferase [Azotobacter vinelandii
           DJ]
 gi|226720682|gb|ACO79853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Azotobacter vinelandii
           DJ]
          Length = 454

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 111/239 (46%), Gaps = 28/239 (11%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN- 195
           RLR        Q+ L GR ++ +       +  RL   G  L YR     F Q NA +N 
Sbjct: 234 RLRVFCREHAAQLWLQGR-DEPRADAPEAPLGYRLEPWGLELHYR--PGDFVQVNAVVNE 290

Query: 196 ---VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
              V  LEW+       +  +L+L+ G GNF+L LA+    V+AVE   P VE  R N  
Sbjct: 291 AMVVQALEWLAPRP---EERVLDLFSGLGNFALPLAQRSREVVAVEGVAPMVERGRENAT 347

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGLDDAT--V 309
            N +NN+         F QA     + ++ L      +  F  +  DPPR G  +A   V
Sbjct: 348 RNGLNNL--------HFWQA-----DLSKPLAGASWAAAGFAAVLCDPPRDGALEAVRQV 394

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           G + A   +LY+SCNP +L RD + L+   + + R  + D FP T H+E   L  R+P+
Sbjct: 395 GSLGAG-RVLYVSCNPATLARDATELAGQGYRLRRAGILDMFPQTAHVEAMALFEREPA 452


>gi|329920434|ref|ZP_08277166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 1401G]
 gi|328936110|gb|EGG32563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 1401G]
          Length = 448

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +VL VEI + +V+ A+ N   N VNN +     ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
              E              +   IFVDPPR GL D  +   V   P  I+YISCNP ++ R
Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL I  +  +  + +   D FP T H+E  VL+ R
Sbjct: 412 DLQIFQAAGYDFDCIDPVDMFPQTPHVESVVLMSR 446


>gi|291537891|emb|CBL11002.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 475

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E A+ N A N +NN +     ++E   A  
Sbjct: 325 DLYCGIGTISLFLAQKAGKVYGVEIVPQAIEDAKNNAALNGINNAEFFVGKAEEVLPAF- 383

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
               + + KD D        I VDPPR G D   +  M++  P  I+Y+SC+  +L RDL
Sbjct: 384 ----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSATLARDL 439

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLL 362
            +L    + + ++   DQF  T H+E  VL+
Sbjct: 440 KVLCEGGYELCKVRAVDQFGNTTHVESVVLM 470


>gi|325679292|ref|ZP_08158877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
 gi|324108889|gb|EGC03120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
          Length = 454

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 26/202 (12%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-----DLLELYCGNGNFSLV 226
           T+ G T+    +  SF Q    +N H  E + A    + G      LL+LYCG G   L 
Sbjct: 270 TMCGNTVSISPL--SFYQ----VNTHQAELLYAMAAELAGLSENMTLLDLYCGTGTIGLS 323

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +AR   +++ VEI +P+++ A  N  AN + N + +   + +  + +    E        
Sbjct: 324 MARQVKKLIGVEIIQPAIDNAVVNAKANGIENAEFICGDAGKIAKLLYERGE-------- 375

Query: 287 IHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THTIER 343
               R   I  DP R G D  ++  M +  P  I+ ISCN  +  RD +IL    ++ ++
Sbjct: 376 ----RPDVIIADPARRGCDGESLEYMAKMSPDRIVMISCNHTTAARDCAILGELGYSCDK 431

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP T H+EC VL+ ++
Sbjct: 432 VMGFDLFPRTTHVECVVLMSKE 453


>gi|330445809|ref|ZP_08309461.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490000|dbj|GAA03958.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 380

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 18/156 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +L+CG G F+L  A   ++V  +EI   ++ +A+ +     VNN+    + S  FT
Sbjct: 240 ASMWDLFCGVGGFALHCAEEVEQVTGIEIEPEAIASAKRSAEMMGVNNLDFAALDSTSFT 299

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           Q+     E                + V+PPR G+ +A    +  +   HI+Y SCNP +L
Sbjct: 300 QSNEAAPEL---------------VLVNPPRRGIGEALCQQLNTFAPKHIIYSSCNPQTL 344

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +DL+ L T + + +   FD FP+T H+E  VLL R
Sbjct: 345 EKDLTRL-TGYKVMKFQWFDMFPHTDHVEAMVLLER 379


>gi|254230529|ref|ZP_04923900.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio sp. Ex25]
 gi|262393276|ref|YP_003285130.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. Ex25]
 gi|151936954|gb|EDN55841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio sp. Ex25]
 gi|262336870|gb|ACY50665.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. Ex25]
          Length = 439

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 157/373 (42%), Gaps = 50/373 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y+QQL  K   LRQ+M  F   ++++      + + YR RA   ++ D      + F  +
Sbjct: 98  YDQQLTYKQQTLRQLMRKFSGNDIELDAPLLGDSLAYRRRARVSLFVD-KKTRQLHFGFR 156

Query: 67  TKERMRIDYFMPGSLL---INALMIEMMATIRL--EPLLRAKLFQIDYLTSQSDQAIVTL 121
            K+  +I       +L   +N L+ E+ + ++   +P    +L  ++ +   +   I TL
Sbjct: 157 KKQSKQIAQVTDCPVLAPELNVLLPEIYSALKAFKKP---EQLGHVELVLGDNGPCI-TL 212

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
            +   L          L    HA  Y +    + N                V G    Y+
Sbjct: 213 RHLSALTTVETNALTELAKRHHASLYLMPATDQLN---------------LVEGDMPFYQ 257

Query: 182 QI-------ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           ++        N+F Q N  +N  M++  +      + D +L+L+CG GNFSL +A+    
Sbjct: 258 EVGVKIPFAPNNFIQVNQAVNKKMVKQAVEWLDPQKSDRVLDLFCGVGNFSLPIAKLAKH 317

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE     VE A  N + N +NN +    + ++  +      E            RF 
Sbjct: 318 VVGVEGVAEMVEKATNNASLNQINNAQFYHANLEQDFEGQVWAAE------------RFD 365

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFP 351
            + +DP R+G       + +     ++Y+SCNP +L RD  S++   + + +L + D FP
Sbjct: 366 KVLLDPARAGASGIIDQVSELGAQRVVYVSCNPATLARDSQSLMEQGYKLTKLGMLDMFP 425

Query: 352 YTRHMECGVLLVR 364
           +T H+E   L  +
Sbjct: 426 HTSHLESMALFEK 438


>gi|293402235|ref|ZP_06646373.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304342|gb|EFE45593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 453

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   +  A+   +V+ VE+ K +VE A+ N   N + N++ V   + +F Q 
Sbjct: 308 VLDAYCGIGTIGMYAAQFAKQVIGVELNKDAVEDAKNNAKLNQIRNIRFVCDDAGKFMQK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           M  ++E            R   + +DPPRSG  +A +  V       +LYISCNP +  R
Sbjct: 368 MAAKKE------------RLDVVILDPPRSGSSEAFIRSVATIRPKKVLYISCNPQTQLR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +     +  + L   D FP T H+E  VL+ RK
Sbjct: 416 DLQLFQKYGYVGDVLYGVDMFPNTFHVESIVLMTRK 451


>gi|291527662|emb|CBK93248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium rectale
           M104/1]
          Length = 418

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 83/155 (53%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   ++ A++   V+ VE+ + ++  A  N   N + N++     + +F   
Sbjct: 276 VIDAYCGTGTIGIIAAKNAGEVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVE 335

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M ++ E            +   + +DPPR+G D+A +  +V+  P  ++Y+SC P++L R
Sbjct: 336 MAQKGE------------KADVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLAR 383

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L+   + ++R   +D FPYT H+E  VLL R
Sbjct: 384 DLKYLTKHGYAVKRATPYDCFPYTEHIETVVLLCR 418


>gi|88812357|ref|ZP_01127607.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231]
 gi|88790364|gb|EAR21481.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231]
          Length = 450

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 19/190 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ N  +N  ++E  +A      Q  +L+LYCG GNF+  +AR    V+ +E     
Sbjct: 271 TDFTQVNPAVNHALVERAIALLALQPQDRVLDLYCGLGNFAFCIARQVASVVGLEGDDAL 330

Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           VE AR N A N + NV   R   S+   +    +R+                + +DPPRS
Sbjct: 331 VERARENAARNAITNVVFQRADLSRGIAELAHLQRDG------------VSRVLLDPPRS 378

Query: 303 GLDD--ATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358
           G  +  A +  ++A   I+Y+SC P +L RD   L     + +    + D FP+T H+EC
Sbjct: 379 GAAEVLADIAALRAE-RIVYVSCGPSTLARDAGRLVHEYGYRLAAAGVMDMFPHTAHVEC 437

Query: 359 GVLLVRKPSG 368
             L VR  +G
Sbjct: 438 ITLFVRDQAG 447


>gi|292487220|ref|YP_003530092.1| putative SAM-dependent methyltransferase [Erwinia amylovora
           CFBP1430]
 gi|292900405|ref|YP_003539774.1| 23S_rRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291200253|emb|CBJ47381.1| 23s rRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291552639|emb|CBA19684.1| putative SAM-dependent methyltransferase [Erwinia amylovora
           CFBP1430]
 gi|312171321|emb|CBX79580.1| putative SAM-dependent methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 438

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 20/158 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+L+CG GNF+L + +    V+ VE     V  A YN   N++NNV   + + +E    
Sbjct: 296 VLDLFCGMGNFTLPIGKFAKNVVGVEGVAALVAKAGYNAELNNLNNVTFWQHNLEE---- 351

Query: 273 MRREREFNRLKDIDIHSYR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSL 328
                      D+    +    F  + +DP R+G       + +  P  ++Y+SCNP +L
Sbjct: 352 -----------DVSRQPWAAQGFNKVLLDPARAGAAGVMAHIARLAPQRVVYVSCNPTTL 400

Query: 329 CRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RD  I L + + +ER+ + D FP+T H+E  VL  RK
Sbjct: 401 ARDSEILLGSGYQLERVTMLDMFPHTGHLESMVLFSRK 438


>gi|331268633|ref|YP_004395125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           BKT015925]
 gi|329125183|gb|AEB75128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           BKT015925]
          Length = 495

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L+++  +V  VEI + ++E A+ N   N+VNN + +   S+E    
Sbjct: 352 VFDAYCGTGTISLFLSKNAKKVYGVEIVEDAIENAKINAKENNVNNAEFIVGKSEEVIPN 411

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           + ++              +   + VDPPR G D + +  +       I+Y+SC+P +L R
Sbjct: 412 LIKQ------------GIKADVVVVDPPRKGCDKSLLDAIGNMKPDRIVYVSCDPGTLAR 459

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           DL+IL    +  + +   D FP T H+E  VLL
Sbjct: 460 DLAILDELGYETKEVQPVDMFPQTGHVENVVLL 492


>gi|302871091|ref|YP_003839727.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302573950|gb|ADL41741.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 442

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 16/192 (8%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235
            LI+     SF Q N+     +   V+   + I  +++ ++Y G G  S+ +A    +V 
Sbjct: 260 NLIFEISPKSFFQVNSIQTELLYNQVVKYLRNIDAEVVFDVYSGIGTISMFVAPFCKKVY 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           ++EI + +VE A+ +   N ++N+        EF  A   E E  +L +  I     + +
Sbjct: 320 SIEIVEDAVEDAKKSSKNNGISNI--------EFICA-NAEIEIPKLMEKGIIP---QVV 367

Query: 296 FVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPRSG + A +  +  Q  P+I+Y+SCNP +L RD SIL S  + I  +   D FP 
Sbjct: 368 ILDPPRSGCEKALLESLIKQKIPNIIYVSCNPSTLARDSSILCSNGYEIVEVQPVDMFPQ 427

Query: 353 TRHMECGVLLVR 364
           T H+EC VL+ R
Sbjct: 428 TFHVECVVLMSR 439


>gi|163789372|ref|ZP_02183811.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7]
 gi|159875226|gb|EDP69291.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7]
          Length = 458

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G  +L LA++   V  +EI +P+V  A+ N   N++ NV     +++E    
Sbjct: 315 VIDAYSGIGTIALTLAKNAKHVYGIEIIEPAVVNAKANAELNNIENVTFEAGAAEE---V 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCR 330
           M +  E  R  D+         + VDPPR GL+ + T  ++   P  ++Y+SCNP +L R
Sbjct: 372 MVQWSEEGRTADL---------LVVDPPRKGLEKEFTEAVIAMKPTKMVYVSCNPATLAR 422

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL++L+   +T++++   D FP T H+E   LLVR
Sbjct: 423 DLALLTEGGYTVKKVQPVDLFPQTTHVESVALLVR 457


>gi|156932729|ref|YP_001436645.1| 23S rRNA 5-methyluridine methyltransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|226725380|sp|A7MQZ8|RUMA_ENTS8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|156530983|gb|ABU75809.1| hypothetical protein ESA_00518 [Cronobacter sakazakii ATCC BAA-894]
          Length = 432

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW L    G +  +L+L+CG GNF+L LAR  + V+ VE    
Sbjct: 263 FIQVNDAVNQQMVARALEW-LEIQPGER--VLDLFCGMGNFTLPLARRAESVVGVEGVAA 319

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE   YN   N + NV   + + +E               D+    +    F  + +DP
Sbjct: 320 LVEKGDYNAGLNALKNVTFFQHNLEE---------------DVTRQPWAQQGFDKVLLDP 364

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +V+  P  ++Y+SCNP +L RD  ++L+  +   RLA+ D FP+T H+E
Sbjct: 365 ARAGAAGVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHTGHLE 424

Query: 358 CGVLLVR 364
              L  R
Sbjct: 425 SMALFER 431


>gi|86146353|ref|ZP_01064677.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222]
 gi|85835832|gb|EAQ53966.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222]
          Length = 439

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 156/376 (41%), Gaps = 56/376 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-----HYRMRAEFHIWHDGDDLYHIMFD 64
           Y  Q+  K   L  +M  +Q  N ++  ++PI      YR RA   ++ D      + F 
Sbjct: 98  YSSQVEHKSQSLTHLMSKYQTANTEV--AQPIVGDDTGYRRRARISLFVD-KKTQQLQFG 154

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            + K+  +I+     ++L   L +       L P L++ L     LTS     +V     
Sbjct: 155 FRKKQSKQIENITDCAVLDPRLNV-------LLPKLKSLLNTFSSLTSLGHVELV----- 202

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI- 183
             L D      +R    L  +  Q  +     +          D+ + + G +  Y +  
Sbjct: 203 --LGDTGPVMVLRHLKPLVEKDEQALMTLAKEEGATLYSMPETDKLVRLVGDSPSYSETG 260

Query: 184 ------ENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231
                  N F Q N  +N  M    +EW+       Q D  +L+L+CG GNFSL +A+  
Sbjct: 261 VTLPFEPNHFIQVNQKVNQQMVAQAIEWLEP-----QADERVLDLFCGLGNFSLPIAQQS 315

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE     V+ A  N A N ++N         EF QA   E   ++L   +    +
Sbjct: 316 AFVVGVEGVDEMVQQATANAALNQLSNT--------EFYQANLEEDLSSQLWAKE----K 363

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348
           F  + +DP R+G     V  + A     ++Y+SCNP +L RD  S+    + + +L + D
Sbjct: 364 FDKVLLDPARAGA-SGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLD 422

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   L ++
Sbjct: 423 MFPHTSHLESMALFIK 438


>gi|229171271|ref|ZP_04298861.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
 gi|228612228|gb|EEK69460.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
          Length = 459

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 168/382 (43%), Gaps = 44/382 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKDQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    V + +    A   + GD  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGDEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++E AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIEDARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T H+E  V LVRK
Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459


>gi|54310181|ref|YP_131201.1| 23S rRNA 5-methyluridine methyltransferase [Photobacterium
           profundum SS9]
 gi|46914622|emb|CAG21399.1| putative TrmA family RNA methyltransferase [Photobacterium
           profundum SS9]
          Length = 471

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 81/179 (45%), Gaps = 15/179 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+E           D +L+L+CG GNFSL LA+H   V+ VE     V 
Sbjct: 290 FIQVNRDVNKKMVEQATDWLDLQPSDRVLDLFCGLGNFSLPLAKHAKAVVGVEGIDEMVH 349

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   N  NN    + +  E    +   RE             F  I +DP R+G  
Sbjct: 350 RATENAMCNKQNNATFYQANLDEDVTKLAWARE------------PFNKILLDPARAGAA 397

Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
                +V+  P  ++Y+SCNP +L RD  + L   + +ERL + D FP T H+E   L 
Sbjct: 398 GVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKGYQLERLGMLDMFPQTGHLESMALF 456


>gi|319775797|ref|YP_004138285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           F3047]
 gi|317450388|emb|CBY86604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           F3047]
          Length = 438

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 269 FIQVNRALNERMVNTALDWLELNQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQ 328

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  N   N + N+   +    + F       + FN+             I +DPPRSG 
Sbjct: 329 KAAQNAERNQIKNITFFQADLGQSFVDQPWSHQSFNK-------------ILLDPPRSGA 375

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L 
Sbjct: 376 AFALNALCELNAEKILYVSCNPATLVRDAEILRDFGYKIEKSAVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|21672850|ref|NP_660915.1| RNA methyltransferase [Chlorobium tepidum TLS]
 gi|50401598|sp|Q8KGF9|Y009_CHLTE RecName: Full=Uncharacterized RNA methyltransferase CT0009
 gi|21645898|gb|AAM71257.1| RNA methyltransferase, TrmA family [Chlorobium tepidum TLS]
          Length = 483

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 122/262 (46%), Gaps = 24/262 (9%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R +   ++ +TS  D+A++  +  RL + A  E  + L + +  RK     +    +  +
Sbjct: 232 RHEQLMVNIVTSWYDKALMQALKERL-EAAMPEQQMTLLNNVTTRK---NTVATGEQEYV 287

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI--QGDLLELYC 218
                YV ERL      L +R   NSF Q N      + + ++A   GI  +  + +LYC
Sbjct: 288 ISGDGYVTERLG----DLDFRISANSFFQTNTRQAETLYDQIIA-VGGITPEDTVYDLYC 342

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +L LARH  + + +E+ + +V+ A  N   N ++N    +   K F  AM+   E
Sbjct: 343 GTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNTVFFQADLKNF-HAMQEALE 401

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD-LSIL 335
                       + + I  DPPR+G+   A   M++  P  I+Y+SCNPD+L RD   I 
Sbjct: 402 ---------PYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCNPDNLARDGKEIA 452

Query: 336 STTHTIERLALFDQFPYTRHME 357
           +  + +      D FP T H+E
Sbjct: 453 ARGYRMTSAQPVDMFPQTNHIE 474


>gi|302390099|ref|YP_003825920.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani
           DSM 16646]
 gi|302200727|gb|ADL08297.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani
           DSM 16646]
          Length = 450

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 92/189 (48%), Gaps = 25/189 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           NSF Q N  + V +L   +    G+ G+  +++ YCG G  +L LA     V  +E+   
Sbjct: 278 NSFFQVNP-VQVEVLYKKVMEYAGLTGEETVIDAYCGIGTITLFLAGKARMVYGIEVVPQ 336

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           +V  AR N   N + NV+ +  +++E   Q + R               R   I +DPPR
Sbjct: 337 AVMDARNNALLNGIENVEFIEGAAEEVMPQLVER-------------GIRADVIVMDPPR 383

Query: 302 SGLD----DATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356
            G D    DA V M    P ++Y+SCNP +L RDL  L    +  E +   D FP+T H+
Sbjct: 384 RGCDEKLLDAAVKM--NPPRMVYVSCNPATLARDLRYLEDRGYRTELVQPVDMFPFTHHV 441

Query: 357 ECGVLLVRK 365
           EC V L++K
Sbjct: 442 EC-VALIKK 449


>gi|209695937|ref|YP_002263867.1| 23S rRNA 5-methyluridine methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|226725377|sp|B6EKM3|RUMA_ALISL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|208009890|emb|CAQ80203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aliivibrio salmonicida
           LFI1238]
          Length = 438

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 22/209 (10%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
           L+  Y +E   V     IY   ++ F Q NA IN  M+   L        D +L+L+CG 
Sbjct: 246 LNHVYGEEPYYVIDEVKIYFTPKD-FIQVNASINDSMVNQALTWLDLNADDCVLDLFCGL 304

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNFSL LA+    V+ +E  +  V+ A+ N   N ++NV         F QA       N
Sbjct: 305 GNFSLPLAQKVKTVVGIEGVEEMVKRAQSNAKRNELDNVT--------FYQA-------N 349

Query: 281 RLKDIDIH---SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL- 335
             + ID     S +F  I +DP R+G       + +  P  ++Y+SCNP +L RD  +L 
Sbjct: 350 LEEPIDQQVWASTKFTKILLDPARAGAAGVMQTVAKLKPETVVYVSCNPATLARDSQLLI 409

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
              + + RL + D FP+T H+E   L  R
Sbjct: 410 QRGYKLTRLGMLDMFPHTGHLESMALFER 438


>gi|228476539|ref|ZP_04061226.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
 gi|228251845|gb|EEK10896.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
          Length = 451

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 158/386 (40%), Gaps = 52/386 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           +Y++QL  K D L Q +  F+  N +       I   +P HYR + +F     G  +   
Sbjct: 88  RYDKQLEFKTDLLGQALKKFKPANFESYDIRPTIGMEQPQHYRAKLQFQTRSFGSSVKSG 147

Query: 62  MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102
           +F + +   + ID  +    L   +M                   I  + T+ +   L +
Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQVIMNKVTNLLDKYKFPIYNERKISGIRTVMIRRALGS 207

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              Q+ ++TS+S  +   L+  + L +++ E      +  +++  +I       +T+I  
Sbjct: 208 NQVQLIFVTSKS-VSFTKLV--KELTESFPEIVTIAVNYNYSKSSEI----YGQETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNG 221
            +D + E +      L  R    +F Q N     V   + V A   G    L++ YCG G
Sbjct: 261 GQDTIQEEVLDYNFALSPR----AFYQLNPQQTEVLYGQAVEALDVGKAEHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A     +  ++I   ++E AR N  +  + N       +++      +E     
Sbjct: 317 TIGLAFANKVKSIRGMDIIPEAIEDARKNAKSLGLENAHYEVGKAEDIIPRWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  + AY    ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILAYTPEKMVYVSCNVSTLARDLVSLAKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|57642070|ref|YP_184548.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
 gi|57160394|dbj|BAD86324.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
          Length = 417

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 25/184 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N+   V+++  V    +G +  +L+LY G G F + LA+   +V  +EI   +V
Sbjct: 255 NSFFQTNSYQAVNLVRKVAELVEGEK--VLDLYSGVGTFGIYLAKRGFKVEGIEINPFAV 312

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG 303
           E A+ N   N V+                    EF   +D D++S   + T+ VDPPR+G
Sbjct: 313 EMAKKNAQINGVDA-------------------EFRVGEDKDVNSLSEYDTVVVDPPRAG 353

Query: 304 LDDATV-GMVQAYPHIL-YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L    V  +++  P  L Y+SCNP +L ++L  LS  + IE     D FP+T H+E  VL
Sbjct: 354 LHPKLVRKILKDRPETLVYVSCNPKTLSQNLKELSEGYKIEEAVGLDMFPHTPHVEA-VL 412

Query: 362 LVRK 365
            +RK
Sbjct: 413 KLRK 416


>gi|50401424|sp|Q6LMS7|RUMA_PHOPR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 466

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 81/179 (45%), Gaps = 15/179 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+E           D +L+L+CG GNFSL LA+H   V+ VE     V 
Sbjct: 285 FIQVNRDVNKKMVEQATDWLDLQPSDRVLDLFCGLGNFSLPLAKHAKAVVGVEGIDEMVH 344

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   N  NN    + +  E    +   RE             F  I +DP R+G  
Sbjct: 345 RATENAMCNKQNNATFYQANLDEDVTKLAWARE------------PFNKILLDPARAGAA 392

Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
                +V+  P  ++Y+SCNP +L RD  + L   + +ERL + D FP T H+E   L 
Sbjct: 393 GVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKGYQLERLGMLDMFPQTGHLESMALF 451


>gi|225574104|ref|ZP_03782715.1| hypothetical protein RUMHYD_02169 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038655|gb|EEG48901.1| hypothetical protein RUMHYD_02169 [Blautia hydrogenotrophica DSM
           10507]
          Length = 455

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 164/389 (42%), Gaps = 56/389 (14%)

Query: 10  YEQQLAEKVDRLR---QMMLAFQ-VPNLQIFR-SEPIHYRMRAEFHIWHDGDDLYHIMF- 63
           YE+QL  K +R++   + +  F  +P   I    EP +YR +A+F +  + +      F 
Sbjct: 90  YEKQLEYKQNRVKSHLERIGGFSDIPMEPIIGMEEPYYYRNKAQFPVGRNKEGRIVTGFY 149

Query: 64  ---DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV- 119
                   E  R    + G+  I   +I+ M   ++EP              +S   +V 
Sbjct: 150 AGRTHSIVETRRCYLGVLGNEEILNRVIDWMEENQVEPY-----------DEKSGSGLVR 198

Query: 120 -TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLD----RDYV---DER 170
             LI +      W  C +   D L A++  I+ +   N  T I  +    RD V   ++ 
Sbjct: 199 HILIRYGFSSGEWMVCLVINGDKLPAKERLIRTLIEINGMTSITANVNTRRDNVILGEKI 258

Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
           L V G+T I  QI          SF Q N      + E  L   K +QG+  + +LYCG 
Sbjct: 259 LPVWGQTYITDQIGEVSYEISPLSFYQVNPLQTRKLYEKALEYAK-LQGNEVVWDLYCGI 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VEI   +V  A+ N   N + NV+     ++E     R+     
Sbjct: 318 GTISLFLAQKAKKVYGVEIVPDAVRDAKRNAKINGMKNVEFFVGKAEEILPKKRKS---- 373

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILS-- 336
                         I VDPPR G D A +  + +  P  ++Y+SC+  +L RDL  L   
Sbjct: 374 -------EGVYADVIVVDPPRKGCDRALLDTILEMGPRRVVYVSCDSATLARDLKYLCGD 426

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +E++   DQF  T H+E   LL RK
Sbjct: 427 GGYRLEKVCPVDQFGMTVHVETICLLERK 455


>gi|126667181|ref|ZP_01738155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp.
           ELB17]
 gi|126628337|gb|EAZ98960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp.
           ELB17]
          Length = 441

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 20/187 (10%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ NA IN  M++  +       G+ +L+L+CG GNF+L LAR   +V+ VE     VE
Sbjct: 270 FTQVNASINQVMVKRAIDWLDVQPGERVLDLFCGLGNFTLPLARRGGQVVGVEGDDAMVE 329

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFT-QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
             R N A N ++NV         +FT Q+  +E               F  I +DPPRSG
Sbjct: 330 RGRENAALNGLDNVTFFGADLHGDFTGQSWAKE--------------GFDKILIDPPRSG 375

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
            +D    +       I+Y+SCNP +L RD  ++    + + +  + D FP+T H+E  + 
Sbjct: 376 AEDICQYLTAFNASRIVYVSCNPATLARDAGVMVRNGYRLVQAGVMDMFPHTTHVES-IA 434

Query: 362 LVRKPSG 368
           L  + SG
Sbjct: 435 LFERDSG 441


>gi|295099490|emb|CBK88579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium
           cylindroides T2-87]
          Length = 485

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 15/158 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L LA     V  VEI   ++E A+ N   N++ N K + M S   T+ 
Sbjct: 237 VLDTYCGVGTIGLTLASSCKSVTGVEINPDAIENAKLNAKQNNIKNAKFISMDS---TRY 293

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP-HILYISCNPDSLCR 330
           M   ++F    D+         I +DPPR+G   D         P  ILYISC+P ++ R
Sbjct: 294 MMEAKKFRNHYDV---------IILDPPRAGTTKDFIEASTSLQPKKILYISCDPKTMMR 344

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL +     +   ++ L D FP+T H+E  VLL  K +
Sbjct: 345 DLVMFRQKGYMTNKIELVDMFPFTEHIETVVLLSHKKA 382


>gi|188996180|ref|YP_001930431.1| RNA methyltransferase, TrmA family [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931247|gb|ACD65877.1| RNA methyltransferase, TrmA family [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 419

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 169/383 (44%), Gaps = 72/383 (18%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL  K + L+  +L       +I +     EP  YR RA+     DG +L    + +
Sbjct: 81  YENQLLLKKEILKDQLLRIGKIETEIEKIIPSKEPFRYRNRAQLKF--DGKNLG--FYKK 136

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT----- 120
            + + + +D         N L+++      L PL   K F I Y    S+  I +     
Sbjct: 137 DSNDLVNVD---------NCLLLKEDIEKLLNPL---KKFLIKYAIMPSNIHIFSNTKEE 184

Query: 121 -LIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            LI    LD++     I      R+ +  +   I+ IG   K K          R ++ G
Sbjct: 185 KLIRFEFLDESQFSNIIYDMNIFREEIDEK---IKGIGFYAKHK----------RYSLLG 231

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK--GIQGDLLELYCGNGNFSL 225
             +++  I +        SF Q N     ++++ V++  K  G +  L++ YCG G  ++
Sbjct: 232 EDVVFENIGDYKFRVSMDSFFQVNVYQIKNLIDEVVSEIKDKGFK-KLVDFYCGVGTLTI 290

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             +++    L +E  + +V+ A+ NI  N + NVK ++  ++   + ++  ++F  L ++
Sbjct: 291 PASKYVKEALGIESNEEAVKDAKANIKHNKLKNVKFLKTQTE---KGLKYAKDF--LPEV 345

Query: 286 DIHSYRFKTIFVDPPRSGLDDATV---GMVQAYPHILYISCNPDSLCRDL-SILSTTHTI 341
                    +  DPPRSGL+   V     +Q    I+Y+SC+P +L RDL   +     +
Sbjct: 346 ---------VIFDPPRSGLNRKIVNEISQIQTVRKIIYVSCDPSTLSRDLRQFVENGFKL 396

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +++ L D FP T H+E   +L R
Sbjct: 397 KKVKLIDMFPQTYHIESISVLER 419


>gi|212711299|ref|ZP_03319427.1| hypothetical protein PROVALCAL_02371 [Providencia alcalifaciens DSM
           30120]
 gi|212686028|gb|EEB45556.1| hypothetical protein PROVALCAL_02371 [Providencia alcalifaciens DSM
           30120]
          Length = 443

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 153/359 (42%), Gaps = 29/359 (8%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
           A+ +  L +      +P + +   +   YR RA   + +     + +M  +QT+    +D
Sbjct: 105 AQALQHLMKRETGVMLPAISVIGGKEYGYRRRARLGLQYQNKSNHLMMGFRQTQTNTLVD 164

Query: 75  YFMPGSLLINA-LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL-LDDAWR 132
                 L     +++  ++T   +  + +KL  ++ +    D   + L+ H   +D + R
Sbjct: 165 INSCPVLHTELDVLLAPLSTCLNQLSIASKLGHVELI--HGDNGNLILLRHLAPVDLSDR 222

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           +   RL +   +    I L G   + +  L  D       VAG  L +     +F Q N 
Sbjct: 223 K---RLLEFAQSHGVTIWLAGDNGQLQT-LQADATLPEYQVAGEILQFSPA--NFIQVNG 276

Query: 193 GINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            IN  M+   +A       D +L+L+CG GNF+L +AR    V+ VE  +  V  A+ N 
Sbjct: 277 EINQQMVAQAIAWLDLSPEDRVLDLFCGMGNFTLPIARLAKMVVGVEGVENLVTQAKNNA 336

Query: 252 AANHVNNVKIVRMSSKE--FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
             N + N      + +E   TQ   +E               F  + +DP R+G      
Sbjct: 337 QRNSIENAAFYNENLEEQIHTQPWAQE--------------GFNKVLLDPARAGAAGVME 382

Query: 310 GMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
            +++  P  I+Y+SCNP +L RD  + L   + + +L + D FP T H+E   L VR P
Sbjct: 383 HLIKLMPEKIVYVSCNPTTLARDSKVLLEGGYQLSQLRMLDMFPQTSHLESMALFVRSP 441


>gi|304439171|ref|ZP_07399089.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304372303|gb|EFM25891.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 532

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 134/301 (44%), Gaps = 57/301 (18%)

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
           + G +LIN L+      I +E  ++A + ++D L S+  + I+  I  R+ D        
Sbjct: 195 ISGEMLIN-LVTSSQEEIDIENYVKA-MLELD-LESEI-KGILHTINDRMSDAV------ 244

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            ++D LH                I   RDYV E+L      + ++    SF Q N     
Sbjct: 245 -VKDELH----------------ILYGRDYVVEKLM----DMEFKIGPFSFFQTNT---- 279

Query: 197 HMLEWVLAATKGI---QGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           +  E +    + I   +GD LL+L+CG G  + +L ++    L VEI + +V++AR N+ 
Sbjct: 280 YSAEVLYTEAEKILKDKGDYLLDLFCGTGTITSILGKNRKEALGVEIVEEAVDSARENVE 339

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N + N+K +     E        +E   + DI         I VDPPR+G+    +  +
Sbjct: 340 LNGLKNIKFIPGDVYEVV------KELENMYDI---------IVVDPPRAGIGKKAIEKI 384

Query: 313 QAY--PHILYISCNPDSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRKPSGW 369
             +   +ILYISCNP +   D+         E+ +   DQFP T H+E   LL +  +  
Sbjct: 385 TEFGVENILYISCNPVTFVEDIKTFRECGYKEKSVHGVDQFPRTNHVETVALLYKLNTEH 444

Query: 370 H 370
           H
Sbjct: 445 H 445


>gi|229543018|ref|ZP_04432078.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
 gi|229327438|gb|EEN93113.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
          Length = 459

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 29/222 (13%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV--LA 204
           A KT +     + DE + ++G+ +I  ++E         +F Q N    V +   V   A
Sbjct: 252 AKKTSVI----FGDETIHLSGKEIIEERLEEFTYELSARAFFQLNPIQTVKLYNEVKKAA 307

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A  G +  + + YCG G   L LA     +  +++   ++E A+ N AA+++ N      
Sbjct: 308 ALTG-KEKIADTYCGVGTIGLWLADGASEIRGMDVIPEAIEDAKKNAAAHNIPNAHYFAG 366

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYIS 322
            ++        E             +R   + VDPPRSG D+A +  +++  P   +Y+S
Sbjct: 367 KAEVLLPKWLNE------------GWRPDVVIVDPPRSGCDEALLRTILKVKPKKFVYVS 414

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CNP +L +DL ILS  + I  +   D FP T H+EC VL+ R
Sbjct: 415 CNPSTLAKDLHILSKAYNIAYMQPVDMFPQTVHVECVVLMSR 456


>gi|317056338|ref|YP_004104805.1| TrmA family RNA methyltransferase [Ruminococcus albus 7]
 gi|315448607|gb|ADU22171.1| RNA methyltransferase, TrmA family [Ruminococcus albus 7]
          Length = 453

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   L +AR   +++ VE+ + +++ A+ N  AN + N + +   + +  Q 
Sbjct: 310 LLDLYCGTGTIGLSMARQVKKLIGVEVIQAAIDNAKANAKANDITNTEFICGDAGKIAQV 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
           +    E            R   I  DP R G D A++  M +  P  I+ ISCN  +  R
Sbjct: 370 LYERGE------------RPDVIIADPARKGCDRASLEYMAKMSPDRIVMISCNHTTAAR 417

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D +IL+   +T +++  FD FP T H+E  VLL RK
Sbjct: 418 DCAILAELGYTCDKVMGFDLFPRTSHVETVVLLSRK 453


>gi|289628369|ref|ZP_06461323.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
          Length = 347

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D +  RL      L +R     F Q NA +N  M+E  L      + + +++L+CG GNF
Sbjct: 157 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 214

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282
           +L LA     V+AVE     VE A  N  +N ++NV+  +   S+  T A          
Sbjct: 215 ALPLAGLAKEVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 264

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340
              D  +  F  + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + 
Sbjct: 265 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 321

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           ++R  + D FP T H+E   L 
Sbjct: 322 LKRAGILDMFPQTAHVEAMALF 343


>gi|253580204|ref|ZP_04857471.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848723|gb|EES76686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 454

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 25/214 (11%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           ++++T+I   +D+  E L      L ++    SF QPN+ +   +L  ++    G   D 
Sbjct: 257 QSDETRILYGQDFFYETLL----GLRFKISTFSFFQPNS-LAAEVLYSIVREYIGDTKDK 311

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LY G G  + + A   D V+ VEI + +VEAA+ N A N+++N K +         
Sbjct: 312 VVFDLYSGTGTIAQLAASVADEVIGVEIVEEAVEAAKQNAALNNLSNCKFIVG------- 364

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                   + LK +D  + +   I +DPPR G+    +  + +Y   HI+YISC   SL 
Sbjct: 365 --------DVLKVLDDLTEKPDVIILDPPRDGIHPKALPKILSYGVDHIVYISCKATSLA 416

Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL + L+  + +E+    DQF  T H+E  VLL
Sbjct: 417 RDLPAFLAAGYKLEKACCVDQFCQTVHVETVVLL 450


>gi|307825599|ref|ZP_07655817.1| RNA methyltransferase, TrmA family [Methylobacter tundripaludum
           SV96]
 gi|307733485|gb|EFO04344.1| RNA methyltransferase, TrmA family [Methylobacter tundripaludum
           SV96]
          Length = 444

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 122/269 (45%), Gaps = 23/269 (8%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           ++ K+ QI+   +  DQ  V  +  R+L+        R+R+  H     + L  +   T 
Sbjct: 191 IKDKIPQIE--VAIGDQQCV--LSFRVLEPPTDADKERMREFAHEHDISLCLQSKGPDTI 246

Query: 160 ICLDRD-YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
           + LD +  +     +  + L ++     FTQ N  IN  M+  VL      + D +L+L+
Sbjct: 247 VPLDGEPELIPTYALPDQGLEFKFKPAMFTQVNYEINKQMINRVLETLALNENDSVLDLF 306

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRRE 276
           CG GNF+L +A+    V+ VE  +P V  A+ N   N + NV+      SK+ +      
Sbjct: 307 CGLGNFTLPMAKFAGHVVGVEGDQPLVNHAKENARHNGIENVEFYAADLSKDISDQPWAN 366

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL 335
           R++N+             I +DP R+G  D      +  P  I+Y+SCNP +L RD  IL
Sbjct: 367 RKYNK-------------IMLDPSRAGASDVLHHFKKWQPEQIVYVSCNPSTLARDAGIL 413

Query: 336 --STTHTIERLALFDQFPYTRHMECGVLL 362
                + + +  + D FP T H+E   L 
Sbjct: 414 VNELGYKLVKAGVMDMFPQTGHVESMALF 442


>gi|302670355|ref|YP_003830315.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302394828|gb|ADL33733.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 470

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 18/157 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G + +LY G G  + +LA   ++V+ VEI + +VEAA+ N   N+++N         EF 
Sbjct: 323 GIIYDLYSGTGTIAQLLAPVANKVIGVEIVEEAVEAAKENAKLNNLDNC--------EFI 374

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
                    + LK +D    +   I +DPPR G++   +  +  Y   +++Y+SC P SL
Sbjct: 375 AG-------DVLKVLDEIEDKPDMIILDPPRDGINPKALQKIIGYGVKYMIYVSCKPTSL 427

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RDL +L    + + R    DQFP+T H+E  VLL +
Sbjct: 428 ARDLEVLQENGYVMTRAVAVDQFPWTSHVETVVLLTK 464


>gi|34763070|ref|ZP_00144043.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887269|gb|EAA24367.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 354

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   +++A+   +V A+EI K + E        N + N++ +  +       
Sbjct: 211 IVDAYSGTGTIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAV------ 264

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330
              E+E  +L +   ++ R  TI  DPPR GL+ + +  V       ++YISCNP +  R
Sbjct: 265 ---EKEIIKLIN---NNKRIDTIIFDPPRKGLEASIIVTVAKLNLKEVVYISCNPSTFAR 318

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ + +   +T+++L   D FP T H+EC  L+V++
Sbjct: 319 DVKLFAEKGYTLKKLQAVDMFPQTSHIECVGLIVKE 354


>gi|257463545|ref|ZP_05627938.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. D12]
 gi|317061100|ref|ZP_07925585.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D12]
 gi|313686776|gb|EFS23611.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D12]
          Length = 453

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 16/186 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N     H+ E  L+    I+  ++++ Y G G   ++L++   +V A+EI + + 
Sbjct: 280 SFFQINVPQTKHLYEKALSLIPDIENKNVVDAYSGTGTIGMLLSKRAKKVYAIEIVESAS 339

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                    N + N+  +  +          E E +RL        +   I  DPPR G+
Sbjct: 340 RDGEKTAKENRITNIDFICGAV---------EVELDRLLK---EGKQLDAIVFDPPRKGI 387

Query: 305 DDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVL 361
           +++ +  V     P ++YISCNP +L RDL I++   + +  +  FD FP T H+EC  L
Sbjct: 388 EESILRKVAEVGIPEMVYISCNPSTLARDLKIMADCGYQVGEIQPFDMFPQTSHVECIAL 447

Query: 362 LVRKPS 367
           L R  S
Sbjct: 448 LQRVKS 453


>gi|238855408|ref|ZP_04645719.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3]
 gi|260665351|ref|ZP_05866199.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           SJ-7A-US]
 gi|282932081|ref|ZP_06337538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
 gi|313473079|ref|ZP_07813563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           1153]
 gi|238832006|gb|EEQ24332.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3]
 gi|239528690|gb|EEQ67691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           1153]
 gi|260560855|gb|EEX26831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           SJ-7A-US]
 gi|281303760|gb|EFA95905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
          Length = 447

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 17/163 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+  D  +++ Y G G   L +A+H   V  VEI KP+V+ A+ N   N + N   V   
Sbjct: 297 GLTSDDTVIDAYSGIGTIGLSVAKHVKSVRGVEIVKPAVQDAKENALLNGIENADYVCGK 356

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISC 323
           ++E   +   E              +   IFVDPPR GL  +     V+  P  I+YISC
Sbjct: 357 AEELMPSWVSE------------GMKADVIFVDPPRKGLTLEFIEASVKTNPQKIVYISC 404

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           NP ++ RDL++     +  E +   D FP T H+EC  +L +K
Sbjct: 405 NPATMVRDLTMYQDLGYDFEEITPVDMFPQTPHVECVTVLEKK 447


>gi|195377591|ref|XP_002047572.1| GJ13518 [Drosophila virilis]
 gi|194154730|gb|EDW69914.1| GJ13518 [Drosophila virilis]
          Length = 603

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 20/188 (10%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           AG NV   + +  A       +L++ CG G  +L  A+H  +VL VEI   +++ A YN 
Sbjct: 392 AGANVLYQQAIDLAAPSRDTTMLDICCGTGTIALAFAKHCKQVLGVEIVPDAIKDAEYNA 451

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATV 309
             N + N K    ++ +F ++M RE  + +   K +D+         VDPPR+GL + ++
Sbjct: 452 QENDIKNCKFFAGNADDFIKSMVREALYGQEPGKPVDL------IAVVDPPRAGLHNRSI 505

Query: 310 GMVQAYPHI---LYISCNPDSLCRDLSILSTTHTIE---------RLALFDQFPYTRHME 357
             +++   I   +Y+SCNP+S  R+   L+   + +              D FP+T H E
Sbjct: 506 AAIRSASAINRLVYVSCNPNSAKRNFIELARPESKQYKGEPFYPKTAVAVDMFPHTTHTE 565

Query: 358 CGVLLVRK 365
             +L  R+
Sbjct: 566 LVILFERE 573


>gi|255523417|ref|ZP_05390386.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
 gi|255512875|gb|EET89146.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
          Length = 458

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           + + YCG G  SL L++   +V  +EI   ++E A+ N   N++NN + IV  S K   +
Sbjct: 315 VFDAYCGTGTISLFLSQKSKKVYGIEIIPQAIENAKINAKQNNINNAEFIVGESEKIIPE 374

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329
            +++               +   + VDPPR G + + +  + Q  P  I+Y+SC+P +L 
Sbjct: 375 LIKK-------------GIKADVVVVDPPRKGCEKSLLEAIAQMAPERIVYVSCDPGTLA 421

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           RDLSIL    +T   +   D FP T H+E  V L RK
Sbjct: 422 RDLSILDELGYTATEIQPVDMFPQTAHVETVVKLYRK 458


>gi|296184699|ref|ZP_06853110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           carboxidivorans P7]
 gi|296050481|gb|EFG89904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           carboxidivorans P7]
          Length = 463

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           + + YCG G  SL L++   +V  +EI   ++E A+ N   N++NN + IV  S K   +
Sbjct: 320 VFDAYCGTGTISLFLSQKSKKVYGIEIIPQAIENAKINAKQNNINNAEFIVGESEKIIPE 379

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329
            +++               +   + VDPPR G + + +  + Q  P  I+Y+SC+P +L 
Sbjct: 380 LIKK-------------GIKADVVVVDPPRKGCEKSLLEAIAQMAPERIVYVSCDPGTLA 426

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           RDLSIL    +T   +   D FP T H+E  V L RK
Sbjct: 427 RDLSILDELGYTATEIQPVDMFPQTAHVETVVKLYRK 463


>gi|270160130|ref|ZP_06188786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Legionella longbeachae
           D-4968]
 gi|289165093|ref|YP_003455231.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Legionella longbeachae
           NSW150]
 gi|269988469|gb|EEZ94724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Legionella longbeachae
           D-4968]
 gi|288858266|emb|CBJ12134.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Legionella longbeachae
           NSW150]
          Length = 444

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 16/175 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N+ +N  M+   L        D+ L+L+CG GNFSL +A+   +VL VE +K  VE
Sbjct: 274 FTQINSMLNQSMVALALQLMDLKSTDIVLDLFCGLGNFSLPMAKFCSKVLGVEGSKTMVE 333

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   NH++NV+    +  +  +  +  ++                + +DPPRSG  
Sbjct: 334 RASMNAKKNHLSNVEFYAANLDDVNEVKKLVQQ------------PCNKVLIDPPRSGAL 381

Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
           +    +    P  I+Y+SCNP +L RD  IL     + + +  + D FP+T H+E
Sbjct: 382 EIVKQIDLLNPERIVYVSCNPITLARDTDILVNQKNYILIKAGVMDMFPHTAHVE 436


>gi|300770388|ref|ZP_07080267.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762864|gb|EFK59681.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 469

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 24/200 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           GR  IY ++E         SF Q N+ +  + L  +     G+ GD L  +LY G G  +
Sbjct: 278 GRDFIYEEMEGLKYKIGPKSFYQTNS-LQAYELYKITREFAGLTGDELVYDLYTGAGTIA 336

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
             +A+    V+ VE    ++E A+ N A N + N K      K+   A           D
Sbjct: 337 NFVAKTAREVIGVEYVPTAIEDAKINSAINQIGNTKFYAGDMKDVLTA-----------D 385

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342
                 +   +  DPPR+G+    V   +      I+Y+SCN  +  RDL++L+  +T++
Sbjct: 386 FIAEHGKPDVVITDPPRAGMHGDVVQRLLEMEAEKIVYVSCNAATQARDLALLNEKYTVD 445

Query: 343 RLALFDQFPYTRHMECGVLL 362
           R+   D FP+T+H+E  VLL
Sbjct: 446 RIKPVDMFPHTQHVENVVLL 465


>gi|42779444|ref|NP_976691.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|51316698|sp|Q73EJ5|Y363_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0363
 gi|42735360|gb|AAS39299.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987]
          Length = 460

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +L    +  + +   D FP+T H+EC VL+ R
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVECVVLMSR 457


>gi|163783831|ref|ZP_02178812.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880902|gb|EDP74425.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 408

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 102/201 (50%), Gaps = 25/201 (12%)

Query: 168 DERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           ++R+ + G++          YR   +SF Q N     ++++ V++        + ++YCG
Sbjct: 214 NKRVKLEGKSFTFYRAGKFNYRVSIDSFFQVNKYQLENIVDEVISEIPKDSQCIGDIYCG 273

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G F+L  ++   +V  +E +K +V+ A+YN+  +++ N K        F Q +      
Sbjct: 274 VGLFTLPASKKAKKVFGIEASKSAVKDAQYNVKVHNIGNAK--------FYQKV-----V 320

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG---MVQAYPHILYISCNPDSLCRDLSILS 336
            +  DI I  Y   T+  DPPR+G+    +     +++   I+Y+SCNP +  RD+++LS
Sbjct: 321 EKSADI-IFGYNPDTLIFDPPRTGIPKNIIQKLLQLKSLKRIIYVSCNPSTASRDINLLS 379

Query: 337 TTHTIERLALFDQFPYTRHME 357
               ++++ L D FP T H+E
Sbjct: 380 EKFELKKVKLIDMFPQTHHIE 400


>gi|254361966|ref|ZP_04978097.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213]
 gi|261493685|ref|ZP_05990204.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494352|ref|ZP_05990846.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153093513|gb|EDN74493.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213]
 gi|261310001|gb|EEY11210.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310685|gb|EEY11869.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 439

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q NA +N  M    LEW+  +    Q  +L+L+CG GNF+L +A     V+ VE  +P
Sbjct: 270 FIQVNATLNEKMVEKALEWLELSN---QDRVLDLFCGMGNFTLPIAERAKSVVGVEGVEP 326

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            V+ AR N   + + NV+  + +  E F+     +  FN+             + +DP R
Sbjct: 327 MVQQARENAVTSGLKNVEFYQTNLDEPFSDKPWAKEPFNK-------------VLLDPAR 373

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G       +    P  I+Y+SCNP +L RD   +L   + +E+ A+ D FP+T H+E  
Sbjct: 374 NGALFCLDHLTSLNPERIVYVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTGHLESI 433

Query: 360 VLLVR 364
            L ++
Sbjct: 434 SLFLK 438


>gi|121996838|ref|YP_001001625.1| 23S rRNA 5-methyluridine methyltransferase [Halorhodospira
           halophila SL1]
 gi|121588243|gb|ABM60823.1| 23S rRNA m(5)U-1939 methyltransferase [Halorhodospira halophila
           SL1]
          Length = 434

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 22/181 (12%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           +   FTQ NA IN+ M+E  L   +   G  +L+L+CG GNF+L LAR    V  +E   
Sbjct: 262 LPTDFTQVNASINMAMVERALEWLQPQSGRRILDLFCGVGNFTLPLAREGATVTGIEGDP 321

Query: 242 PSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             VE A  N AAN ++ +  +  ++++E T+ +               +  F  + +DPP
Sbjct: 322 RLVERAEENAAANGLHADFAVADLATEEGTRRV---------------AGGFDAVLLDPP 366

Query: 301 RSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHM 356
           RSG  +  + V    A   ++Y SC P +L RD  IL   H   +    + D FP+T H+
Sbjct: 367 RSGAQEVLSAVAGTGAR-RVVYCSCGPATLARDAGILVAEHGFRLNAAGIMDMFPHTAHV 425

Query: 357 E 357
           E
Sbjct: 426 E 426


>gi|148270770|ref|YP_001245230.1| RNA methyltransferase [Thermotoga petrophila RKU-1]
 gi|147736314|gb|ABQ47654.1| RNA methyltransferase, TrmA family [Thermotoga petrophila RKU-1]
          Length = 439

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 21/185 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            +F Q N  +   +++ V      +QG+  LL+LY G G FS+  +    RV++VE ++ 
Sbjct: 268 TAFFQSNYSVTSKLIDHVYREL-ALQGNEVLLDLYAGIGTFSVRASFSAARVISVESSRV 326

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V+A + N   N   N++ V     +F            LK+   +S R   I +DPPRS
Sbjct: 327 AVKAGKANANINSRRNIEYVEQDVLDF------------LKN---YSGRADRIILDPPRS 371

Query: 303 GLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           G     V  +V+  P  I+Y+SC P +L RDL +L    ++I R+  FD FP T H+E  
Sbjct: 372 GAGPEVVKEIVRLSPERIVYVSCEPSTLARDLKVLVENGYSILRVKPFDMFPQTYHVETA 431

Query: 360 VLLVR 364
           V LV+
Sbjct: 432 VTLVK 436


>gi|110638905|ref|YP_679114.1| RNA methyltransferase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281586|gb|ABG59772.1| 23S rRNA m(5)U-1939 methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 479

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 16/192 (8%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235
           LI+R    SF Q N+    + L  V     G+ G+  + +LY G G  +  +A+   +V+
Sbjct: 286 LIFRVGPKSFYQTNSD-QAYELYKVTRDFAGLTGNEVVYDLYTGTGTIANFVAKKAKQVI 344

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E    ++E A+ N   N+++N        K+        +EF     I  H  R   I
Sbjct: 345 GIEYVADAIEDAKVNSKINNIDNTLFYAGDMKDVLN-----KEF-----IAQHQ-RPDVI 393

Query: 296 FVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
             DPPR+G+ +  +   +    P I+Y+SCNP +  RDLS+L + + + R+   D FP+T
Sbjct: 394 ITDPPRAGMHEDVINTLLFIGAPKIVYVSCNPATQARDLSMLDSDYEVSRIQPVDMFPHT 453

Query: 354 RHMECGVLLVRK 365
            H+E  VLL ++
Sbjct: 454 AHVENVVLLTKR 465


>gi|23098223|ref|NP_691689.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
 gi|50401583|sp|Q8ES75|Y768_OCEIH RecName: Full=Uncharacterized RNA methyltransferase OB0768
 gi|22776448|dbj|BAC12724.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
          Length = 459

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  +E+   ++E A+ N   N +NNV+    S  +  + 
Sbjct: 313 VIDAYCGIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVE---FSVGQAEKV 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCR 330
           M + +E     D+         I VDPPR G D D    M+   P  I+Y+SCNP +L R
Sbjct: 370 MPKWKEQGLDPDV---------IVVDPPRKGCDVDFLEAMIAMKPKRIVYVSCNPSTLAR 420

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMEC 358
           DL IL       +++   D FP T H+EC
Sbjct: 421 DLRILEDGGFETKQVQPVDMFPSTNHVEC 449


>gi|251788451|ref|YP_003003172.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya zeae Ech1591]
 gi|247537072|gb|ACT05693.1| RNA methyltransferase, TrmA family [Dickeya zeae Ech1591]
          Length = 444

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 96/211 (45%), Gaps = 19/211 (9%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           CL  D    R  +AG +L +      F Q N  IN  M+E  LA      Q  +L+L+CG
Sbjct: 247 CLYGDAPSYR--IAGLSLAFS--PRDFIQVNDEINQRMVEQALAWLDPQPQDRVLDLFCG 302

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            GNF+L LA    RV+ VE     V+  R N   N +  V     + +E         + 
Sbjct: 303 MGNFTLPLAERAGRVVGVEGVAALVDKGRENATRNGLTQVTFYHHNLEE---------DV 353

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-ST 337
            R       S  F  + +DP R+G       +V+  P  ++YISCNP +L RD  +L + 
Sbjct: 354 TRQP---WASMGFDKVLLDPARAGAPGVMPQIVKLAPRRVVYISCNPTTLARDSKLLMAA 410

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
            + + RL + D FP+T H+E   L +    G
Sbjct: 411 GYRLARLTMLDMFPHTGHLESMALFLLGSDG 441


>gi|254430408|ref|ZP_05044111.1| 23S rRNA (uracil-5-)-methyltransferase [Cyanobium sp. PCC 7001]
 gi|197624861|gb|EDY37420.1| 23S rRNA (uracil-5-)-methyltransferase [Cyanobium sp. PCC 7001]
          Length = 451

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 36/222 (16%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLEL 216
           T++   R ++ ER    G  L  R   ++F Q N      +L  +  A +G+  G L++ 
Sbjct: 253 TELVAGRSWLRERF--CGEEL--RIASDTFFQVNTAQAERVLPSLQHALEGLTPGLLVDA 308

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G FSL LAR   RV  +E    +V  A  N + N ++                   
Sbjct: 309 YCGIGTFSLPLARGGWRVHGLERNPEAVRLAALNASINGLS------------------- 349

Query: 277 REFNRLKDIDIHSY------RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
            E    +  D+ +       R + +F+DPPR GLD A +  +QA   P +LY+SC+P +L
Sbjct: 350 -ELASFEAGDVAALLPPWLPRCQALFLDPPRRGLDGAVMAALQASSPPLLLYLSCDPATL 408

Query: 329 CRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR-KPS 367
            RDL +L  S  +T+ R+   D FP T H+E   +L R +PS
Sbjct: 409 ARDLGLLTRSCGYTVSRVQPLDFFPQTSHIETLAVLRRAEPS 450


>gi|81429157|ref|YP_396158.1| putative RNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610800|emb|CAI55851.1| Putative RNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
          Length = 454

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 115/252 (45%), Gaps = 37/252 (14%)

Query: 130 AWRECAIRLRDALHARKYQIQLIGRA-------NKTKICLDRDYVDERLTVAGRTLIYRQ 182
           A RE AI ++ AL      +Q +  A       ++TK+   RD++ + L      L +  
Sbjct: 224 AAREIAIEIKKALPEVVSIMQNVNAAQTNVIFGDQTKLIAGRDFIRDELM----GLKFEI 279

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
              SF Q N  +   +L         + G+  +++ Y G G  SL +A+H  +V  VE+ 
Sbjct: 280 SAQSFYQVNP-VQTEVLYQKAIEAAELTGNETVIDAYSGIGTISLAVAKHAKQVYGVEVV 338

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI----DIHSYRFKTIF 296
           + +V  AR+N   N ++NV        EFT          + +D+         +   + 
Sbjct: 339 ESAVMDARHNAKINAIDNV--------EFT--------LGKAEDVMAQWQTDGLQVDALI 382

Query: 297 VDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           VDPPR GL+ + +  V Q  P  ++Y+SCNP +L RDL +L+   +  E     D FP T
Sbjct: 383 VDPPRKGLEPSFIEAVGQLKPAKMVYVSCNPATLARDLDLLAAQGYQAEGTQPVDMFPQT 442

Query: 354 RHMECGVLLVRK 365
            H+E    LV K
Sbjct: 443 LHVESVTKLVLK 454


>gi|227538859|ref|ZP_03968908.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241368|gb|EEI91383.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 469

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 24/200 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           GR  IY ++E         SF Q N+ +  + L  +     G+ GD L  +LY G G  +
Sbjct: 278 GRDFIYEEMEGLKYKIGPKSFYQTNS-LQAYELYKITREFAGLTGDELVYDLYTGAGTIA 336

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
             +A+    V+ VE    ++E A+ N A N + N K      K+   A           D
Sbjct: 337 NFVAKTAREVIGVEYVPTAIEDAKINSAINQIGNTKFYAGDMKDVLTA-----------D 385

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342
                 +   +  DPPR+G+    V   +      I+Y+SCN  +  RDL++L+  +T++
Sbjct: 386 FIAEHGKPDVVITDPPRAGMHGDVVQRLLEMEADKIVYVSCNAATQARDLALLNEKYTVD 445

Query: 343 RLALFDQFPYTRHMECGVLL 362
           R+   D FP+T+H+E  VLL
Sbjct: 446 RIKPVDMFPHTQHVENVVLL 465


>gi|326804241|ref|YP_004322059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650795|gb|AEA00978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 459

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 167/388 (43%), Gaps = 58/388 (14%)

Query: 10  YEQQLAEK----VDRLRQMMLAFQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QLA K    V+ L++  L  +   L+ I   EP HYR +A+  I      LY   + 
Sbjct: 96  YPAQLAFKRQQVVNSLQKQGLLEKTQVLETIGMEEPWHYRNKAQIPIGQADGKLYTGFYR 155

Query: 65  QQTKERMRIDYF---MPGSLLINALMIEMMATIRLEP-----------LLRAKLFQIDYL 110
           + + + + +  +   +PG   I+  + +++A +   P           LLR  + +  Y 
Sbjct: 156 KGSHKLVPMTDYQIQLPG---IDETLQKVLAILNQYPISAYDEDSHQGLLRHLIVRQGYY 212

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL--------HARKYQIQLIGRANKTKICL 162
           T Q    +V +I  + L +  +  A  L+D L        ++ +    +I      ++  
Sbjct: 213 TGQV--MLVIVINGKKLPEEEKIVAT-LKDELPDLVSIVINSNQKNTNVI-MGQDQRVVY 268

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
             D  ++R+      L +R    SF Q N      +    L A   ++GD  +++ YCG 
Sbjct: 269 GEDLYEDRMF----DLTFRISSKSFFQVNTSQAEKLYHQALEAAD-LKGDEVVVDAYCGI 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+    V  VE+   ++  AR N   N ++NV      ++E  Q         
Sbjct: 324 GTISLCLAQAAKEVYGVEVVPDAINQARENAQLNGLDNVTFQAGKAEEVIQ--------- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYISCNPDSLCRDLS-ILS 336
              D      +   + VDPPR GL +    +V  VQ  P I+Y+SCNP +L RDL+  + 
Sbjct: 375 ---DWVQAGLKPDVVVVDPPRKGLAEDFIQSVLEVQP-PKIVYVSCNPATLARDLAKFVD 430

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + + ++   D FP T H+E  V L R
Sbjct: 431 QGYQLGKVQPVDMFPQTHHVEAVVGLTR 458


>gi|148544651|ref|YP_001272021.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184154004|ref|YP_001842345.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|148531685|gb|ABQ83684.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri DSM
           20016]
 gi|183225348|dbj|BAG25865.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
          Length = 459

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ YCG G  SL +A+H  +V  VEI   ++E A++N   N + N K V   
Sbjct: 305 GLDGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV--- 361

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
                   + E +F + +       +   + VDPPR GL ++ +          ++Y+SC
Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSC 412

Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           NP +L RD+   +    H  + +   DQFP T H+E   +L R
Sbjct: 413 NPATLVRDIKRFADQGYHVTKPIQPVDQFPQTTHVESVTVLER 455


>gi|330828386|ref|YP_004391338.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Aeromonas veronii
           B565]
 gi|328803522|gb|AEB48721.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Aeromonas veronii
           B565]
          Length = 440

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 85/184 (46%), Gaps = 15/184 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  IN  M+E  L      + D +L+L+CG GNF+L LAR    V+ VE     
Sbjct: 269 GDFIQVNGPINQSMVEQALKWLGASKDDKVLDLFCGIGNFTLPLARQAREVVGVEGELAM 328

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N   N + N +  +    +    M   RE             F  + +DP R G
Sbjct: 329 VQRAEENARRNGITNARFYKADLSDDIVGMSWARE------------GFDLVLLDPARPG 376

Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
             +    +V+  P  ++Y+SCNP +L RD  +L    + + RL + D FP+T H+E   L
Sbjct: 377 ALEVMGHVVKLSPKRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLESMAL 436

Query: 362 LVRK 365
             R+
Sbjct: 437 FERE 440


>gi|257884417|ref|ZP_05664070.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,501]
 gi|257820255|gb|EEV47403.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,501]
          Length = 457

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 20/214 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
            +K K+   RDY++++L   G+T  YR    SF Q N     ++ +  +   +  + D+ 
Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIV 313

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ Y G G   L LA   D+V  +E+   ++E A++N   N + NV         + +  
Sbjct: 314 IDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENV---------YYEVG 364

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
           + E+   + ++  I   +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD
Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             + +   + ++++   D FP T H+E     V+
Sbjct: 422 AKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455


>gi|255994151|ref|ZP_05427286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum
           ATCC 49989]
 gi|255993819|gb|EEU03908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum
           ATCC 49989]
          Length = 399

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 124/281 (44%), Gaps = 36/281 (12%)

Query: 100 LRAKLFQIDYLTSQSD------QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153
           +R     ++ +TS SD      ++ V L+    L++        L   LH    +IQ   
Sbjct: 141 IRTSEIIVNLVTSSSDLANFNTESFVNLLTSLKLNN-------ELVGILHTVNDKIQDTA 193

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
                +I   RDY  ER+      L ++    SF Q N     ++  + + +   +Q  +
Sbjct: 194 NGEDIRILYGRDYYMERIM----DLDFKVRMGSFFQTNVQAAENLYRYAINSIDNVQDKV 249

Query: 214 L-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G  +  LA    +V+ V+I+  ++++A  N   N +NNV   R    E    
Sbjct: 250 IFDLFCGTGTITQSLAGAAKKVIGVDISDDAIKSAIENTKLNKINNVSFYRGDVFEVI-- 307

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCR 330
               R  N   D+         I +DPPR+G++  A   +V+  P  I+YISCNP +L  
Sbjct: 308 ----RNINEKPDV---------IVLDPPRAGVNAKALEKIVEFSPREIVYISCNPKTLID 354

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           +L       + I+ L  FD F +T H+E   LL +  +  H
Sbjct: 355 NLYFFEYNRYNIKSLKAFDNFFFTSHVEAVALLSKLNTDKH 395


>gi|152977878|ref|YP_001343507.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           succinogenes 130Z]
 gi|150839601|gb|ABR73572.1| RNA methyltransferase, TrmA family [Actinobacillus succinogenes
           130Z]
          Length = 439

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 86/179 (48%), Gaps = 25/179 (13%)

Query: 187 FTQPNAGINVHML----EWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q NA +N  M+    +W+ L  T  +    L+L+CG GNF+L ++R     + +E   
Sbjct: 271 FIQVNADLNRKMVATASDWLALKPTDRV----LDLFCGMGNFTLPISRLVKSAVGIEGVS 326

Query: 242 PSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V  A  N   NH  NV+  +      F       R F++             I +DPP
Sbjct: 327 AMVTKATKNAEQNHCENVEFYQTDLDSSFVDKPWANRPFDK-------------ILLDPP 373

Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
           RSG   A   ++   P  ILY+SCNP +L RD  ++L   + + R+A+ D FP+T H+E
Sbjct: 374 RSGAAFALSALIGLQPEKILYVSCNPATLIRDAENLLRAGYRLRRVAMIDMFPHTGHLE 432


>gi|227495419|ref|ZP_03925735.1| 23S rRNA methyluridine methyltransferase [Actinomyces coleocanis
           DSM 15436]
 gi|226830966|gb|EEH63349.1| 23S rRNA methyluridine methyltransferase [Actinomyces coleocanis
           DSM 15436]
          Length = 396

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 101/217 (46%), Gaps = 27/217 (12%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE----WVLAATKGIQGD-L 213
           +I L  DY+  +L      L+ R    SF Q N  I   M +    W +A    ++ D  
Sbjct: 193 EISLYGDYLPFQLGRVKLQLLPR----SFFQTNTFIAHAMYQQAQRWAIA----LKPDRA 244

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++L+CG G F+L LA     V  VE++ P++ AA+    A+ + NV      +  F+   
Sbjct: 245 VDLFCGVGGFALFLAATCRAVTGVELSAPAIAAAKRGAVASGLENVDFYAADATSFS--- 301

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRD 331
                   + +  +   R   I V+PPR G+       +       I+Y SCNP SL +D
Sbjct: 302 --------ISEGGLQLTRRDMIVVNPPRRGIGVELANWINESQARVIIYSSCNPVSLAKD 353

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           + +L  ++   R  +FD FP T H E  VLLV++P G
Sbjct: 354 MELLG-SYKATRARVFDMFPGTDHAEVMVLLVKEPQG 389


>gi|77919151|ref|YP_356966.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77545234|gb|ABA88796.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter carbinolicus DSM
           2380]
          Length = 434

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 84/185 (45%), Gaps = 20/185 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N   N  M+  V+        G +L+L+CG GNFSL +AR    V+ VE    S
Sbjct: 264 GGFAQINLPQNRAMVREVVGTLVSNPPGRVLDLFCGMGNFSLPVARLAQEVVGVEAYLQS 323

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E AR N   N + NV           +A     E+     ID+       + +DPPRSG
Sbjct: 324 IEMARLNARLNEIENVSFFA------REAYGAATEYGADGAIDL-------VIMDPPRSG 370

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLAL---FDQFPYTRHMECG 359
             D    +V   P  ILY+SC+P +L RDL  L   H   RL     FD FP+T H E  
Sbjct: 371 AYDVARELVTVRPARILYVSCDPPTLVRDL--LPLLHNGYRLVWSRPFDLFPHTHHTESI 428

Query: 360 VLLVR 364
             L R
Sbjct: 429 TFLER 433


>gi|153956154|ref|YP_001396919.1| tRNA (uracil-5-)-methyltransferase-related protein [Clostridium
           kluyveri DSM 555]
 gi|146349012|gb|EDK35548.1| TRNA (uracil-5-)-methyltransferase-related protein [Clostridium
           kluyveri DSM 555]
          Length = 469

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 17/163 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + + YCG G  SL L++   +V  VEI   ++E A  N A N ++NV+ +   
Sbjct: 317 GLTGNEVIFDAYCGTGTISLFLSQKAKKVYGVEIIPQAIENANMNAAENGIDNVEFITGK 376

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323
           S++    + ++              R   + VDPPR G ++A +  +    P  I+Y+SC
Sbjct: 377 SEKVIPELIKK------------GVRADVVVVDPPRKGCEEALLHSIADMRPRTIVYVSC 424

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +P +L RDL+IL    + +E++   D FP T H+E  V L R+
Sbjct: 425 DPATLARDLAILRDFGYRVEKVQPVDMFPQTSHVETIVSLQRE 467


>gi|321314402|ref|YP_004206689.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
 gi|320020676|gb|ADV95662.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
          Length = 461

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 17/159 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +QG+  +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N + N +     +
Sbjct: 309 LQGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEA 368

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
           +        E                 T+ VDPPR G D+A +  +++  P  ++Y+SCN
Sbjct: 369 ETVIPKWYEE------------GIAADTLVVDPPRKGCDEALLRTILEMKPKRVVYVSCN 416

Query: 325 PDSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLL 362
           P +L RDL +L     + R +   D FP+T H+EC V+L
Sbjct: 417 PGTLARDLRVLEDGGYVTREVQPVDMFPHTNHVECVVVL 455


>gi|227551663|ref|ZP_03981712.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecium TX1330]
 gi|257887201|ref|ZP_05666854.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,141,733]
 gi|257895737|ref|ZP_05675390.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com12]
 gi|293377654|ref|ZP_06623843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           PC4.1]
 gi|227179226|gb|EEI60198.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecium TX1330]
 gi|257823255|gb|EEV50187.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,141,733]
 gi|257832302|gb|EEV58723.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com12]
 gi|292643654|gb|EFF61775.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           PC4.1]
          Length = 457

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 104/214 (48%), Gaps = 20/214 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
            +K K+   RDY++++L   G+T  YR    SF Q N     ++ +  +   +  + D+ 
Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIV 313

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ Y G G   L LA   D+V  +E+   ++E A++N   N + NV         + +  
Sbjct: 314 IDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENV---------YYEVG 364

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
           + E+   + ++  I   +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD
Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             + +   + ++++   D FP T H+E     V+
Sbjct: 422 AKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455


>gi|16077741|ref|NP_388555.1| RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308510|ref|ZP_03590357.1| hypothetical protein Bsubs1_03798 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312833|ref|ZP_03594638.1| hypothetical protein BsubsN3_03754 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317757|ref|ZP_03599051.1| hypothetical protein BsubsJ_03708 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322036|ref|ZP_03603330.1| hypothetical protein BsubsS_03794 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|50401309|sp|O31503|YEFA_BACSU RecName: Full=Uncharacterized RNA methyltransferase yefA
 gi|2632987|emb|CAB12493.1| putative RNA methyltransferase [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 459

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 17/159 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +QG+  +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N   N +     +
Sbjct: 309 LQGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEA 368

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
           +        E                 T+ VDPPR G D+A +  +V+  P  ++Y+SCN
Sbjct: 369 ETVIPKWYEE------------GITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCN 416

Query: 325 PDSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLL 362
           P +L RDL +L     + R +   D FP+T H+EC VL+
Sbjct: 417 PGTLARDLRVLEDGGYVTREVQPVDMFPHTNHVECCVLI 455


>gi|282882158|ref|ZP_06290797.1| RNA methyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|281297923|gb|EFA90380.1| RNA methyltransferase [Peptoniphilus lacrimalis 315-B]
          Length = 441

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 24/210 (11%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           I   RDYV E L      L ++    SF Q N     ++ +        +QG  +L+LYC
Sbjct: 250 ILYGRDYVIEELL----GLKFKIGTFSFFQTNTYSAAYLYQLAFDMIDNLQGKKVLDLYC 305

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  S V A+  + VL VEI + +V AAR N   N+++NV  +     +          
Sbjct: 306 GTGTISQVFAKKAESVLGVEIVEEAVNAARENAQYNNISNVDFIAGDVAKV--------- 356

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYP-HILYISCNPDSLCRDLS-I 334
              + D+DI +     I +DPPR G+++  A   ++   P   LYISCNP S  +D+   
Sbjct: 357 ---VNDLDIKA---DIIILDPPRVGINNPKALDKIIDFSPEEFLYISCNPISYVKDVKRF 410

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +   + ++++   DQFP T ++E   LL +
Sbjct: 411 IERGYKLKKIVGLDQFPRTVNLELISLLEK 440


>gi|240948983|ref|ZP_04753337.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus minor
           NM305]
 gi|240296570|gb|EER47188.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus minor
           NM305]
          Length = 440

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 15/181 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q NA  N  M+   L      + D +L+L+CG GNF+L LA+    V+ VE  +  V 
Sbjct: 270 FIQVNAEQNQKMVAQALNWLALEKSDRVLDLFCGMGNFTLPLAQQAGYVVGVEGVEEMVA 329

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N   N ++NV   + +  E            R  D    +  F  + +DP R G  
Sbjct: 330 TARQNAVENQLDNVAFYQTNLDE------------RFVDQPWATEAFNKVLLDPARHGAY 377

Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
            A   + +  P  I+Y+SCNP +L RD   ++ + +++ ++A+ D FP+T H+E   L V
Sbjct: 378 FALDHLCELNPERIVYVSCNPATLVRDAEKLIKSGYSLAKVAVIDMFPHTGHLESISLFV 437

Query: 364 R 364
           +
Sbjct: 438 K 438


>gi|323703882|ref|ZP_08115516.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531170|gb|EGB21075.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans
           DSM 574]
          Length = 462

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 147/352 (41%), Gaps = 42/352 (11%)

Query: 40  PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR---- 95
           P HYR +   H       +    F + T + +  D      LL+N  +IE++A +     
Sbjct: 128 PWHYRNKIHLHATQSAGRIKLGFFAEGTHQ-LTADISEQSCLLVNQEIIEVVAAVEELLN 186

Query: 96  -----------LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALH 143
                       + LLR  + +  Y T +    +VT   + L + +  RE   R    + 
Sbjct: 187 SFKIKSYDWESKQGLLRHVMIRRGYATGEIMVVLVTTAENWLTEQELAREIVNRHPRVVS 246

Query: 144 ARKYQIQLIGR---ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
             +      GR     + ++   +D + +RL      L ++    SF Q N      +  
Sbjct: 247 VIRNINTNPGRLILGPQNQVLAGKDSITDRLC----GLKFKISAASFYQVNPRQTEVLYN 302

Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
             L     ++GD  +++ YCG G  + +LARH   V+ +EI   +V  AR N   N++ N
Sbjct: 303 KALEFAN-LKGDETVVDAYCGIGTIASLLARHAGSVIGLEIVPDAVTDARENARLNNLFN 361

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYP 316
           ++    S +              L ++     R   + +DPPR G +   +  +     P
Sbjct: 362 IEFFNGSVERL------------LPEMVARGLRPDLVVLDPPRKGCEKEVLEAILKTQVP 409

Query: 317 HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            ++Y+SC+P +L RDL IL+   +    +   D FP+T H+EC V L RK S
Sbjct: 410 RVVYVSCDPATLARDLGILAGAGYEPAEVQPVDMFPWTCHVECVVWLKRKHS 461


>gi|298487963|ref|ZP_07006002.1| RNA methyltransferase, TrmA family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157514|gb|EFH98595.1| RNA methyltransferase, TrmA family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 451

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D +  RL      L +R     F Q NA +N  M+E  L      + + +++L+CG GNF
Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282
           +L LA     V+AVE     VE A  N  +N ++NV+  +   S+  T A          
Sbjct: 319 ALPLAGLAKEVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340
              D  +  F  + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + 
Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           ++R  + D FP T H+E   L 
Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447


>gi|307545603|ref|YP_003898082.1| 23S rRNA 5-methyluridine methyltransferase [Halomonas elongata DSM
           2581]
 gi|307217627|emb|CBV42897.1| 23S rRNA 5-methyluridine methyltransferase [Halomonas elongata DSM
           2581]
          Length = 483

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 96/201 (47%), Gaps = 20/201 (9%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNF 223
           RLT   RTL+     + F Q N  +N  M    L W+  A   +     +L+L+ G GNF
Sbjct: 279 RLTAGRRTLVLGLEPSDFLQANEAVNQRMVDTALSWLAPALSPVAPGTRVLDLFAGIGNF 338

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA     V AVE +   VE    N A N V      R +     +A RR        
Sbjct: 339 SLPLATQGAEVSAVEGSTAMVERLAGNAARNQV--AVTARQADLNDAEACRRL------- 389

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLS-ILSTTHTI 341
              + +   + + +DPPRSG +     +V+   P +LYISC+P +L RD + ++S  + +
Sbjct: 390 ---LATTAPEVLVLDPPRSGAEALCRQLVEHPVPWVLYISCDPATLARDAAWLVSAGYVV 446

Query: 342 ERLALFDQFPYTRHMECGVLL 362
            R A+ D F +T H+E  +LL
Sbjct: 447 RRSAVADMFAHTSHLESMLLL 467


>gi|187776694|ref|ZP_02993167.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC
           15579]
 gi|187775353|gb|EDU39155.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC
           15579]
          Length = 459

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E    
Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV--- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                    + D+     +   I VDPPR G +   +  +    P  I+Y+SC+P +L R
Sbjct: 373 ---------IPDLINKGIKADVIVVDPPRKGCEKTLLEAIADIKPKRIVYVSCDPGTLAR 423

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL IL+   +  + +   D FP T H+EC VL+ R
Sbjct: 424 DLGILNGLGYETKEVQPVDMFPQTSHVECVVLITR 458


>gi|271501842|ref|YP_003334868.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345397|gb|ACZ78162.1| RNA methyltransferase, TrmA family [Dickeya dadantii Ech586]
          Length = 444

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 19/211 (9%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCG 219
           CL  D    R  +AG +L +      F Q N  IN  M+   L   +   Q  +L+L+CG
Sbjct: 247 CLHGDMPSYR--IAGLSLAFS--PRDFIQVNDDINQRMVAQALTWLELQPQDRVLDLFCG 302

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            GNF+L +A+H  RV+ VE     VE  + N   N +  V     + +E         + 
Sbjct: 303 MGNFTLPMAQHAGRVVGVEGVAALVEKGQENAQRNGLTQVTFYHHNLEE---------DV 353

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-ST 337
            R       S  F  + +DP R+G       +V+  P  ++YISCNP +L RD  +L + 
Sbjct: 354 TRQP---WASMGFDKVLLDPARAGAPGVMPQIVKLAPRRVVYISCNPTTLARDSKVLMAA 410

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
            + + RL + D FP+T H+E   L +    G
Sbjct: 411 GYRLARLTMLDMFPHTGHLESMALFLLGSEG 441


>gi|331013485|gb|EGH93541.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 451

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D +  RL      L +R     F Q NA +N  M+E  L      + + +++L+CG GNF
Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282
           +L LA     V+AVE     VE A  N  +N ++NV+  +   S+  T A          
Sbjct: 319 ALPLAGLAKEVVAVEGVATMVERAAVNAISNDLHNVQFFQADLSQPLTHA---------- 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340
              D  +  F  + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + 
Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           ++R  + D FP T H+E   L 
Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447


>gi|189424908|ref|YP_001952085.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ]
 gi|189421167|gb|ACD95565.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ]
          Length = 437

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 141/332 (42%), Gaps = 27/332 (8%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP-GSLLINALMIEMMATIRLEPLLR 101
           YR RA+F +      L    F + ++  + +    P  +  IN  M+++   I+  P   
Sbjct: 122 YRARAQFKLHATPAGLAVGFFRRGSRYVIDLPQGCPICTEPINTAMLKLRQVIQAVP--- 178

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL--RDALHARKYQIQLIGRANKTK 159
             L +I  L+ +   + V  + H +  D  R   + L  RD L      +Q IGR    +
Sbjct: 179 -DLHRIPQLSLEEGASGVVAVVHYIGSDQQRLKQLLLQHRDQLGVSGLFLQ-IGRKEALQ 236

Query: 160 ICLDRD---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215
                    Y   R  ++   +        F+Q N   N  M++ V   A       +L+
Sbjct: 237 PVFGSGHLTYPVPRCDLSADAMSLGYEIGGFSQVNRLQNQKMVKLVCGYAQPAASQRMLD 296

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCGNGN SL L+     +L +E   PS+ +A        V+N + +R+++  F    R 
Sbjct: 297 LYCGNGNLSLPLSGAVQELLGIEGFAPSIASA--------VDNARQLRVNNSTF----RC 344

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334
                 L+ +      F  + +DPPR+G  D    + Q     I+Y+SC+P +L RDL+ 
Sbjct: 345 NDASKELRHLIAQHAVFDLVLLDPPRAGAADVARQLAQLGAQRIVYVSCDPATLARDLAA 404

Query: 335 L--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L  +  + +      D FP T H+E   LL R
Sbjct: 405 LCGAAGYRLIEATPLDMFPQTGHLETVALLTR 436


>gi|219130362|ref|XP_002185336.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403251|gb|EEC43205.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 378

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 104/218 (47%), Gaps = 25/218 (11%)

Query: 163 DRDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG------IQGD 212
           D DYV+    + LT   R L +  +  +F Q N  +   M+E VLA   G          
Sbjct: 170 DDDYVETNHQQPLTTTVRGLNFTYLAGNFFQNNYYVLPLMVEHVLARAVGDDHEQPTMTH 229

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L + YCG+G F++  A  F  V+ +EI   +V  A+ N   N +++ + +  SS+     
Sbjct: 230 LADCYCGSGLFAIAAAPSFATVVGIEINDKAVREAQANAERNGIDHCQFLAASSENIFAE 289

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           +   R+F R   +         + +DPPR G     +  +  +    I+Y+SC+P +  R
Sbjct: 290 I---RDFPRDTTV---------VVLDPPRKGCSVEFLSQLYDFAPRRIVYMSCDPTTQAR 337

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           D   I++  + I  +  FD FP TRH+EC ++L R P+
Sbjct: 338 DAQGIVAAGYRITSVQPFDLFPQTRHIECLMVLERSPA 375


>gi|330866046|gb|EGH00755.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 451

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D +  RL      L +R     F Q NA +N  M+E  L      + + +++L+CG GNF
Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282
           +L LA     V+AVE     VE A  N  +N ++NV+  +   S+  T A          
Sbjct: 319 ALPLAGLAKEVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340
              D  +  F  + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + 
Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           ++R  + D FP T H+E   L 
Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447


>gi|219856479|ref|YP_002473601.1| hypothetical protein CKR_3136 [Clostridium kluyveri NBRC 12016]
 gi|219570203|dbj|BAH08187.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 478

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 17/163 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + + YCG G  SL L++   +V  VEI   ++E A  N A N ++NV+ +   
Sbjct: 326 GLTGNEVIFDAYCGTGTISLFLSQKAKKVYGVEIIPQAIENANMNAAENGIDNVEFITGK 385

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323
           S++    + ++              R   + VDPPR G ++A +  +    P  I+Y+SC
Sbjct: 386 SEKVIPELIKK------------GVRADVVVVDPPRKGCEEALLHSIADMRPRTIVYVSC 433

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +P +L RDL+IL    + +E++   D FP T H+E  V L R+
Sbjct: 434 DPATLARDLAILRDFGYRVEKVQPVDMFPQTSHVETIVSLQRE 476


>gi|223986649|ref|ZP_03636641.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM
           12042]
 gi|223961380|gb|EEF65900.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM
           12042]
          Length = 453

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 17/162 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  ++++YCG G   L  AR   RV+ +EI   +VE A+ N   N + N + +   
Sbjct: 302 GLTGEETVIDVYCGTGTIGLSAARKAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICGD 361

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323
           +   T  +   R             +     VDPPR GLD  T+  +V+  P  I+Y+SC
Sbjct: 362 AGVCTAQLLERR------------IQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSC 409

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +P +L RD ++L+   + +E +   D FP T H+E  VL+ +
Sbjct: 410 DPATLARDCAVLNERGYGVEVVQPVDMFPQTTHVETVVLMSK 451


>gi|194466906|ref|ZP_03072893.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
 gi|194453942|gb|EDX42839.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
          Length = 456

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ YCG G  SL +A+H  +V  VEI   ++E A++N   N + N K V   
Sbjct: 305 GLDGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV--- 361

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISC 323
                   + E +F + +       +   + VDPPR GL ++ +          ++Y+SC
Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLAESLIEATGKMDPKKVIYVSC 412

Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           NP +L RD+   +    H  + +   DQFP T H+E   +L R
Sbjct: 413 NPATLVRDIKRFADQGYHVTKPIQPVDQFPQTTHVESVTVLER 455


>gi|294784751|ref|ZP_06750039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_27]
 gi|294486465|gb|EFG33827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_27]
          Length = 463

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   +++A+   +V A+EI K + E        N + N++ +  +       
Sbjct: 320 IVDAYSGTGTIGMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAV------ 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330
              E+E  +L +   ++ +  TI  DPPR GL+ + +  V       ++YISCNP +  R
Sbjct: 374 ---EKELVKLIN---NNQKIDTIIFDPPRKGLEASIIDTVAKLNLKEVVYISCNPSTFAR 427

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ + S   + +++L   D FP T H+EC  L+V++
Sbjct: 428 DVKLFSEKGYVLKKLQAVDMFPQTSHIECVGLIVKE 463


>gi|330986720|gb|EGH84823.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 451

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D +  RL      L +R     F Q NA +N  M+E  L      + + +++L+CG GNF
Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282
           +L LA     V+AVE     VE A  N  +N ++NV+  +   S+  T A          
Sbjct: 319 ALPLAGLAKEVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340
              D  +  F  + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + 
Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           ++R  + D FP T H+E   L 
Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447


>gi|317502259|ref|ZP_07960432.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316896374|gb|EFV18472.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 590

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 18/173 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G++GD  + +LYCG G  SL LA+   +V  VEI  P+++ AR N   N + N +     
Sbjct: 332 GLKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENALLNGIENAQFFVGK 391

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323
           S+E      ++ E     +   H+     I VDPPR G D   +  +++  P  I+Y+SC
Sbjct: 392 SEEILPKYYKDYEEQHGGE-KAHA---DVIVVDPPRKGCDAELLETILKMQPERIVYVSC 447

Query: 324 NPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366
           +  +L RDL IL         +  + IE+    DQFP T H+E  VLL  +KP
Sbjct: 448 DSATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETVVLLSQQKP 500


>gi|212638180|ref|YP_002314700.1| tRNA (Uracil-5-)-methyltransferase fused to TRAM domain
           [Anoxybacillus flavithermus WK1]
 gi|212559660|gb|ACJ32715.1| tRNA (Uracil-5-)-methyltransferase fused to TRAM domain
           [Anoxybacillus flavithermus WK1]
          Length = 452

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
           + DE + +AG   I   + +        +F Q N    + + + V  A    + + +++ 
Sbjct: 254 FGDETIVLAGEPYIQEVLGDLSFELSARAFFQLNPIQTIKLYDEVKKAAALTKNERVVDA 313

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L LAR    V  ++    +++ AR N   +   NV      ++E      +E
Sbjct: 314 YCGVGTIGLWLAREAKEVRGMDTIPEAIDDARQNAERHGFTNVMYAVGKAEELLPKWVKE 373

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI 334
                        ++   I VDPPR+G D A +  + Q  P  ++Y+SCNP SL RD+  
Sbjct: 374 ------------GWKPDVIVVDPPRTGCDHALLKTILQVKPKTVVYVSCNPSSLARDIDT 421

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L+  + +E +  FD FP+T H+E    LVRK
Sbjct: 422 LTKQYRVEYIQPFDLFPHTAHVESVAKLVRK 452


>gi|126649590|ref|ZP_01721831.1| RNA methyltransferase [Bacillus sp. B14905]
 gi|126593915|gb|EAZ87838.1| RNA methyltransferase [Bacillus sp. B14905]
          Length = 459

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 17/162 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +QGD  +++ YCG G  SL LA+    V+ VEI   ++E A+ N   N   N       +
Sbjct: 310 LQGDERVIDAYCGIGTISLFLAQKAKAVMGVEIVPQAIEDAKRNAVLNGFTNTYFEAGPA 369

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324
           +E        R +   K+ D+       + VDPPR G D+A +  +  Q    ++Y+SCN
Sbjct: 370 EEVI-----PRWYKEGKEADV-------LVVDPPRKGCDEALLKTILEQRPKRVVYVSCN 417

Query: 325 PDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +L RDL IL    +  + +   D FP++ H E    LVRK
Sbjct: 418 PATLARDLRILEDGGYQTQEIQPVDMFPHSTHCEAVAWLVRK 459


>gi|19705034|ref|NP_602529.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|50401614|sp|Q8R5Z8|Y1713_FUSNN RecName: Full=Uncharacterized RNA methyltransferase FN1713
 gi|19712946|gb|AAL93828.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 464

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 79/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   +++A+   +V A+EI K + E        N + N++ +  +       
Sbjct: 320 IVDAYSGTGTIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAV------ 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330
              E+E  +L +   ++ +  TI  DPPR GL+ + +  V       ++YISCNP +  R
Sbjct: 374 ---EKELVKLVN---NNQKIDTIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFAR 427

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ + S   + +++L   D FP T H+EC  L+ RK
Sbjct: 428 DVKLFSEKGYVLKKLQAVDMFPQTSHIECVGLIERK 463


>gi|56418877|ref|YP_146195.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56378719|dbj|BAD74627.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 457

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 17/150 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LAR    V  VEI   ++E A+ N   N + NV     ++++    
Sbjct: 314 VIDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAELNGIQNVTFEVGAAEDVIPR 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
              E              R   + VDPPR G D A +  + A   P ++Y+SCNP +L R
Sbjct: 374 WYEE------------GVRADCLVVDPPRKGCDAALLETIIAMKPPRVVYVSCNPATLAR 421

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMEC 358
           DL IL      TIE +   D FP+T H+EC
Sbjct: 422 DLRILEDGGYETIE-VQPVDMFPHTAHVEC 450


>gi|323694104|ref|ZP_08108283.1| hypothetical protein HMPREF9475_03146 [Clostridium symbiosum
           WAL-14673]
 gi|323501821|gb|EGB17704.1| hypothetical protein HMPREF9475_03146 [Clostridium symbiosum
           WAL-14673]
          Length = 488

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 100/219 (45%), Gaps = 21/219 (9%)

Query: 157 KTKICLDRDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
           KT + L R+ V+      +T     + YR    SF Q N  +    L        G+ G+
Sbjct: 282 KTNVILGREVVNLYGPGYITDYIGNVKYRISPLSFYQVNP-VQTERLYGTALEYAGLTGE 340

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +LYCG G  SL L++   +V  VEI   ++E AR N   N + NV+     ++E  
Sbjct: 341 ETVWDLYCGIGTISLFLSQKAKKVYGVEIVPQAIEDARENARLNGIENVEFFVGKAEEVL 400

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
                E +     D+         I VDPPR G D   +  +       ++Y+SC+  +L
Sbjct: 401 PKQYEEDKV--YADV---------IVVDPPRKGCDPVCLDTIVMMGPKKVVYVSCDSATL 449

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
            RD+  L    + +ER++  D FP + H+E   LLVRKP
Sbjct: 450 ARDVKYLEERGYWVERVSCVDMFPMSGHVETATLLVRKP 488


>gi|219849086|ref|YP_002463519.1| RNA methyltransferase, TrmA family [Chloroflexus aggregans DSM
           9485]
 gi|219543345|gb|ACL25083.1| RNA methyltransferase, TrmA family [Chloroflexus aggregans DSM
           9485]
          Length = 414

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 154/361 (42%), Gaps = 54/361 (14%)

Query: 18  VDRLRQMMLAFQVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYF 76
           V+++R+ +   +VP   +  + +P  YR  A  H  H     YH      T  +  +D  
Sbjct: 94  VEQIRKFLPGVEVPIRPVIAAPQPWGYRNSARLHADHTALG-YH-----ATGTKTVVD-L 146

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
           +   LL+ AL  E +A +R  P   A L     L + +                +   A 
Sbjct: 147 VDDPLLLPALR-EALAGLRRLPF--AGLISEVTLRASA---------------VYGYAAA 188

Query: 137 RLRDALHARKYQIQLIGRA--NKTKICLDRDYVDERLTVAGRT------LIYRQIENSFT 188
           RL   + A + +I  +  A    T +       DE L  AG        +++    +SF 
Sbjct: 189 RLLPTVTAHRNEIARLAAAWMATTPVLAGVTLADEPLVGAGAIFDELGEMVFHLSLSSFF 248

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q N      MLE V  A     G LL+ Y G G+F+L LA  ++ V+AVE  +P+V    
Sbjct: 249 QVNHPQAERMLEIVRTALAPHGGRLLDAYSGVGSFALPLAAGYEDVVAVEAHQPAVADGE 308

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            +   N V+NV+ V  ++         ER    L      S  F  + +DPPR G   A 
Sbjct: 309 QSAFLNKVSNVRFVAGAA---------ERVIGHL------SGPFHAVILDPPRRGCHPAV 353

Query: 309 V-GMVQAYPH-ILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           +  +++  P  I+Y+SC+P  + RDL+ L     H I+ +   D FP T H+E  V+L R
Sbjct: 354 LTALIKHAPRCIVYVSCHPGLIGRDLAPLVAAGYHCIQ-VQPIDLFPQTPHIETVVVLER 412

Query: 365 K 365
            
Sbjct: 413 S 413


>gi|254443794|ref|ZP_05057270.1| 23S rRNA (uracil-5-)-methyltransferase [Verrucomicrobiae bacterium
           DG1235]
 gi|198258102|gb|EDY82410.1| 23S rRNA (uracil-5-)-methyltransferase [Verrucomicrobiae bacterium
           DG1235]
          Length = 414

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 123/276 (44%), Gaps = 30/276 (10%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           + K   I +L + +    V + +  L+ DA  E    +R    A  ++ Q      K   
Sbjct: 156 KDKPMTIGFLKAGTRSRYVEVEHCPLISDAMNETLTDVR----ADTFRRQKEKPFKKGGT 211

Query: 161 CLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD 212
            L R+++D  +T   + +I  Q+ +         F Q N  I      +V    +     
Sbjct: 212 LLIREHLD-GITTDPKAIIREQVGDITFSFLAGEFFQNNPSILPAFTGYVRDKARDAGAK 270

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L++ YCG+G F L  A+ F+  + +E+++ SV+ A  N   N + N +     +     
Sbjct: 271 YLVDAYCGSGLFCLTAAKDFEEAIGIEVSEQSVQYAVQNAKDNQIENARFAVGDAAAI-- 328

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                  F+++K     S     + +DPPR G  +  +  + A+    ++Y+SCNP +  
Sbjct: 329 -------FSQIKFPGEDS----AVVIDPPRKGSSEDFLNQLIAFGPRSVIYVSCNPATQM 377

Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL + L   + I+ +  FD FP TRH+EC V+L +
Sbjct: 378 RDLQVLLGGGYAIDEIQPFDLFPQTRHLECVVVLKK 413


>gi|325262190|ref|ZP_08128928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
 gi|324033644|gb|EGB94921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
          Length = 471

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 23/230 (10%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + ++++T++   +DY  ER+      + ++    SF QPN+     + E 
Sbjct: 246 LHILNDSLSDVVQSDETRVLYGKDYFYERIL----GMEFKITPFSFFQPNSRGAEVLYET 301

Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V      IQ   + +L+ G G    VLA    +V+ VEI + +VEAAR N A N + N +
Sbjct: 302 VREYIGDIQDMTVFDLFSGTGTIGQVLAPVAKQVIGVEIVEEAVEAARENAARNGLGNCR 361

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHI 318
            +                F  L +I+    +   I +DPPR G+    +  +  Y    I
Sbjct: 362 FIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILDYQVDRI 406

Query: 319 LYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +YISC   SL RDL  IL   + +E++   DQF  T H+E   LL RK +
Sbjct: 407 VYISCKATSLTRDLEMILGRGYRVEKVVAVDQFCETVHVETVALLTRKKA 456


>gi|170760987|ref|YP_001788698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407976|gb|ACA56387.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 461

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E    
Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV--- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    + D+     +   + VDPPR G + + +  + A     I+Y+SC+P +L R
Sbjct: 373 ---------IPDLINKGIKADVVVVDPPRKGCEKSLLEAIAATRPKRIVYVSCDPGTLAR 423

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL IL+   +  + +   D FP T H+E  VLL RK
Sbjct: 424 DLGILNGLGYETKEVQPVDMFPQTSHVETCVLLQRK 459


>gi|150015413|ref|YP_001307667.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
 gi|149901878|gb|ABR32711.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB
           8052]
          Length = 452

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 31/217 (14%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212
           K  +   +DY+ E L      L +     SF Q     N    E + +  K   GD    
Sbjct: 258 KVNVLFGKDYIRETLL----ELQFNISPFSFFQ----TNTKGAESLYSIVKEFMGDSEEK 309

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LYCG G    ++A +  +V+ +E+ + +VEAAR N   N +NN + +     E  +
Sbjct: 310 IVFDLYCGTGTIGQIVAPNAKKVIGIELIEEAVEAARENAKLNGLNNCEFIAGDVAEIIK 369

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
            ++ + +                I +DPPR+G+    +  V  +  P I+Y+SCNP +L 
Sbjct: 370 TVKVKPDI---------------IILDPPRTGVHPKALDYVIKFNAPEIIYVSCNPKTLV 414

Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
            DL +L+   + + +  + D FP T H E  V L ++
Sbjct: 415 NDLRVLTEKGYKVIKTKVKDMFPNTPHAETVVRLTKE 451


>gi|285019297|ref|YP_003377008.1| 23s rrna (uracil-5-)-methyltransferase [Xanthomonas albilineans GPE
           PC73]
 gi|283474515|emb|CBA17016.1| probable 23s rrna (uracil-5-)-methyltransferase protein
           [Xanthomonas albilineans]
          Length = 467

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA      GD +L+L+CG GNF+L LAR    V+ 
Sbjct: 291 LAFRPLD--FIQVNAVLNQQMIAHALALLDAQSGDRVLDLFCGLGNFTLPLARTVREVVG 348

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  AR N   N ++N +     + + TQ  R+     +          F  + 
Sbjct: 349 VEGDAGLVTRARENAQRNGLDNAQFF---AADLTQDQRQAPWMRQ---------GFDKLL 396

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD S L  T    ++     D FP+T
Sbjct: 397 LDPPRSGALEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGFVLKAAGAMDMFPHT 456

Query: 354 RHME 357
            H+E
Sbjct: 457 AHVE 460


>gi|297205587|ref|ZP_06922983.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii
           JV-V16]
 gi|297150165|gb|EFH30462.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii
           JV-V16]
          Length = 481

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +V  VEI KP+V+ AR N   N + N + V   ++E    
Sbjct: 338 VIDAYSGIGTIGLSVAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPN 397

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E              +   IFVDPPR GL    +   V+  P  I+YISCNP ++ R
Sbjct: 398 WVNE------------GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVR 445

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL++     +  E +   D FP T H+E   +L +K
Sbjct: 446 DLTMYQELGYDFEEITPVDMFPQTPHVESVTVLEKK 481


>gi|227363773|ref|ZP_03847880.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           reuteri MM2-3]
 gi|325682984|ref|ZP_08162500.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           MM4-1A]
 gi|227071130|gb|EEI09446.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           reuteri MM2-3]
 gi|324977334|gb|EGC14285.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           MM4-1A]
          Length = 480

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ YCG G  SL +A+H  +V  VEI   ++E A++N   N + N K V   
Sbjct: 326 GLDGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV--- 382

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
                   + E +F + +       +   + VDPPR GL ++ +          ++Y+SC
Sbjct: 383 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSC 433

Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           NP +L RD+   +    H  + +   DQFP T H+E   +L R
Sbjct: 434 NPATLVRDIKRFADQGYHVTKPIQPVDQFPQTTHVESVTVLER 476


>gi|331083695|ref|ZP_08332806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330403906|gb|EGG83458.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 458

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 14/152 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E AR N   N + N +     ++E   A  
Sbjct: 311 DLYCGIGTISLFLAQKAKKVYGVEIVPAAIEDARKNAEINGIENAEFFVGKAEEVLPAKY 370

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
           +E                  I VDPPR G D A +  M+   P  I+Y+SC+  +L RDL
Sbjct: 371 KE-----------DGVYADVIVVDPPRKGCDGALIETMLSMKPERIVYVSCDSATLARDL 419

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
            +L    + +E++A+ D FP + H+E  VL++
Sbjct: 420 KVLCEKEYQVEKVAVCDMFPGSVHVETVVLMM 451


>gi|124002028|ref|ZP_01686882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microscilla marina
           ATCC 23134]
 gi|123992494|gb|EAY31839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microscilla marina
           ATCC 23134]
          Length = 481

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 16/193 (8%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           TL +R    SF Q NA    + L  V      ++GD  + +LY G G  +  +A    +V
Sbjct: 296 TLKFRVGAKSFYQTNAS-QAYELYKVAGEMADLKGDEVVYDLYTGTGTIANFIAHKAKKV 354

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E    ++E A+ N   N ++N        +        + EF     +++H +    
Sbjct: 355 IGLEYVPMAIENAKVNSEINSIDNTSFFAGDIQHLL-----DEEF-----VELHGHP-NV 403

Query: 295 IFVDPPRSGLDDATVGMVQ-AYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           I  DPPRSG+    V M++ A P  I+Y+SCNP +  RDL++L+  + I  +   D FP+
Sbjct: 404 IITDPPRSGMHADVVEMLKKASPDKIVYVSCNPATQARDLAMLADEYDITAVQPVDMFPH 463

Query: 353 TRHMECGVLLVRK 365
           T H+E  VLL RK
Sbjct: 464 THHVENVVLLERK 476


>gi|302379709|ref|ZP_07268194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312616|gb|EFK94612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           ACS-171-V-Col3]
          Length = 442

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS 224
           Y  E LT     L +R    SF QPN      +    L     + G ++ +LYCG G  +
Sbjct: 255 YGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGTGTIA 314

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
            + A+  + V+ VEI + +VE A+ N   N + N K +      F + + +       KD
Sbjct: 315 QIFAKKSESVIGVEIVEEAVEKAKENAKLNGLTNTKFICDDCLNFMEKVEK-------KD 367

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTTHTI 341
           +         + +DPPR G+    +  ++   P   +YISCNP +   DL   +   + I
Sbjct: 368 V---------VVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYKI 418

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + L  FDQFP T H E  V+L +
Sbjct: 419 KSLEFFDQFPRTYHCEAVVMLEK 441


>gi|270291082|ref|ZP_06197305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
           acidilactici 7_4]
 gi|270280478|gb|EFA26313.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
           acidilactici 7_4]
          Length = 455

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 118/245 (48%), Gaps = 37/245 (15%)

Query: 138 LRDALHARKYQIQLIGRAN--KTKICLDRDYVDERLTVAGRTLIYRQI--------ENSF 187
           + +A+H     + +I   N  +T + + ++   +RL +AG ++I+ ++         +SF
Sbjct: 229 IAEAIHQIDGVVSVIQNINPKQTNVIMGKE---DRL-LAGESVIHDELLGQKFIISAHSF 284

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            Q N  +    L  +     G+ G   +L++Y G G  SL +A+   +V  VEI K +V+
Sbjct: 285 YQVNP-VQTEKLYQLAIKKAGLTGKETVLDVYSGIGTISLAMAQAAKKVYGVEIVKEAVQ 343

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A+ N   N   NVK V   +++     + E              +   + VDPPR GLD
Sbjct: 344 DAKVNAVQNQAKNVKFVVGKAEDQMAKWQAE------------GMQPDVVVVDPPRKGLD 391

Query: 306 ----DATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIER-LALFDQFPYTRHMECG 359
               DATV M  A   ++Y+SCNP +L RD+    +  + +++ +   DQFP T H+E  
Sbjct: 392 ESVIDATVAM--APKRVVYVSCNPATLVRDIDRFQAQGYKVDQPITPVDQFPQTPHVESV 449

Query: 360 VLLVR 364
            ++ R
Sbjct: 450 TVMSR 454


>gi|304406301|ref|ZP_07387958.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus
           YK9]
 gi|304344885|gb|EFM10722.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus
           YK9]
          Length = 513

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 102/213 (47%), Gaps = 28/213 (13%)

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVL--AATKGIQGDLLE 215
           + DE  T+ G  +IY +++         SF Q N    V +    +  A   G +  +++
Sbjct: 310 FGDETRTLWGSDVIYDELDGIRFAISARSFYQVNPSQTVALYRKAVDYAGLTGAE-TVID 368

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  SL LAR   RV  VE+   ++E A+ N   N + N +     S+     + R
Sbjct: 369 AYCGIGTISLFLARKAGRVYGVEVVPEAIEDAKRNAELNGIANAEFEAGLSE---VVIPR 425

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLS 333
            RE     D+         I VDPPR G D A +  +++  P  ++Y+SCNP +L RDL 
Sbjct: 426 WREEGIAADV---------IVVDPPRKGCDAALLDTIIRMKPERVVYVSCNPSTLARDLR 476

Query: 334 IL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L      T+E +   D FP+T H+E   LLV+
Sbjct: 477 VLEDGGYRTVE-VTPVDMFPWTVHVENVALLVK 508


>gi|284049068|ref|YP_003399407.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM
           20731]
 gi|283953289|gb|ADB48092.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM
           20731]
          Length = 458

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 17/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           +++ YCG G  +L LA+   R L +EI +P++  AR N   N V+NV  +   ++KE  +
Sbjct: 315 VIDAYCGTGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFLCGDAAKEMPE 374

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329
            +R+               R   + +DPPR+G +   +  + +  P  ++Y+SCNP SL 
Sbjct: 375 LVRQ-------------GSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLA 421

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           RD +IL      + ++   D FP+T H+E   LL
Sbjct: 422 RDAAILRDKGFVVRKVQPVDMFPHTSHVETVCLL 455


>gi|262273704|ref|ZP_06051517.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Grimontia hollisae CIP
           101886]
 gi|262222119|gb|EEY73431.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Grimontia hollisae CIP
           101886]
          Length = 438

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 19/198 (9%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230
           ++ G+TL +      F Q NA IN  M+   L      + D +L+L+CG GNFSL LA  
Sbjct: 256 SIGGQTLAFE--PQDFIQVNADINEKMIAQALDWLALDESDKVLDLFCGLGNFSLPLAEK 313

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK-EFTQAMRREREFNRLKDIDIHS 289
              V+ +E  +  V  A  N  +N+  N +    + + + T  +  + ++N+        
Sbjct: 314 VKAVVGIEGVEEMVARASQNALSNNQANARFYHANLELDVTGTVWGKEQYNK-------- 365

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALF 347
                I +DP R+G  +    + Q+    ++Y+SCNP +L RD  + L   + + RL + 
Sbjct: 366 -----ILLDPARAGALEVMPYVAQSEAERVVYVSCNPATLARDSQVLLENGYQLVRLGML 420

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP+T H+E   L VR+
Sbjct: 421 DMFPHTGHLESMALFVRE 438


>gi|227530251|ref|ZP_03960300.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           vaginalis ATCC 49540]
 gi|227349840|gb|EEJ40131.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           vaginalis ATCC 49540]
          Length = 458

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 18/163 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +++ YCG G  SL +A+H  +V  VEI   +++ A++N   N + N K V   
Sbjct: 305 GLDGSQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIDDAKHNAKRNGIKNAKFV--- 361

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
                   + E +F + ++      +   + VDPPR GL ++ +      A   ++Y+SC
Sbjct: 362 ------VGKAEEQFAKWQE---DGLKPDVVIVDPPRKGLAESLIEATGKMAPQKVIYVSC 412

Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           NP +L RD+   +    H  + +   DQFP T H+E   +L R
Sbjct: 413 NPATLIRDIQRFAEQGYHVTKPIQPVDQFPQTTHVESVAVLER 455


>gi|195591421|ref|XP_002085439.1| GD12311 [Drosophila simulans]
 gi|194197448|gb|EDX11024.1| GD12311 [Drosophila simulans]
          Length = 605

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 20/168 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN + N K    ++ +F ++
Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478

Query: 273 MRREREFNR--LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327
           M RE  +++  +K +D+         VDPPR+GL   ++  ++   A   ++Y+SCNP S
Sbjct: 479 MVREALYDQEPVKPLDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 532

Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366
             R+   L+   + +              D FP+T H E  +L  R+P
Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580


>gi|330974367|gb|EGH74433.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 451

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V+AVE     
Sbjct: 279 GDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLARDVVAVEGVATM 338

Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           VE A  N  +N ++NV+  +   S+  TQA             D  +  F  + +DPPR 
Sbjct: 339 VERAAVNAMSNDLHNVRFFQADLSQPLTQA-------------DWAAEGFSAVLLDPPRD 385

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGV 360
           G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP T H+E   
Sbjct: 386 GAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEAMA 445

Query: 361 LL 362
           L 
Sbjct: 446 LF 447


>gi|292670870|ref|ZP_06604296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC
           43541]
 gi|292647491|gb|EFF65463.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC
           43541]
          Length = 465

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 26/188 (13%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ E  + Q  A  ++H  E V+ A           YCG G  +L LA+   +V  +EI 
Sbjct: 299 RQAERLYEQALAYADLHGTETVIDA-----------YCGTGTITLFLAQRARKVYGIEIV 347

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +P++  AR N   NHV N + +   +     A+ ++              R   + +DPP
Sbjct: 348 QPAILDARKNARDNHVKNAEFIVGDATAVMPALYKQ------------GIRPDVVVIDPP 395

Query: 301 RSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTI-ERLALFDQFPYTRHME 357
           R+G ++  +       P  I+Y+SCNP +L RDL+IL     I + +   D FP T H+E
Sbjct: 396 RAGCNETVLCTFANMRPQRIIYVSCNPATLARDLAILKELGYITQEVQPVDLFPQTSHVE 455

Query: 358 CGVLLVRK 365
              L+ +K
Sbjct: 456 NVALITKK 463


>gi|312870826|ref|ZP_07730932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 3008A-a]
 gi|312873060|ref|ZP_07733119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311091293|gb|EFQ49678.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311093702|gb|EFQ52040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 3008A-a]
          Length = 450

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +VL VEI + +V+ A+ N   N VNN +     ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
              E              +   IFVDPPR GL D  +   V   P  I+YISCNP ++ R
Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +  +  +  + +   D FP T H+E  VLL +
Sbjct: 412 DLRVFQAAGYDFDCIDPVDMFPQTPHVETIVLLSK 446


>gi|309803859|ref|ZP_07697944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164093|gb|EFO66355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 11V1-d]
          Length = 450

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +VL VEI + +V+ A+ N   N VNN +     ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
              E              +   IFVDPPR GL D  +   V   P  I+YISCNP ++ R
Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +  +  +  + +   D FP T H+E  VLL +
Sbjct: 412 DLRVFQAAGYDFDCIDPVDMFPQTPHVETIVLLSK 446


>gi|284009169|emb|CBA76214.1| 23S rRNA (uracil-5-)-methyltransferase [Arsenophonus nasoniae]
          Length = 466

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 35/205 (17%)

Query: 180 YRQIEN--------SFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           Y  IEN        +F Q N  IN  M    L+W+    K     +L+L+CG GNF+L +
Sbjct: 279 YYSIENVKLTFDPQNFIQVNPEINKKMVAQALDWLALEPKD---RVLDLFCGMGNFTLPI 335

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A H   V+ VE     V   RYN + N        R+++ EF QA   + E      ID 
Sbjct: 336 ACHVHSVVGVEGVTELVAQGRYNASLN--------RLTNAEFYQA---DLEL----AIDC 380

Query: 288 HSYR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIE 342
             +    F  I +DP R+G       +++  P  ++YISCNP +L +D   +L+ ++ + 
Sbjct: 381 QPWAKMGFNKILLDPARAGAIGVMSHIIKLKPERVVYISCNPTTLVKDSKQLLTASYQLM 440

Query: 343 RLALFDQFPYTRHMECGVLLVRKPS 367
            + + D FP+T H+E   L  R  S
Sbjct: 441 SVRMLDMFPHTSHLESMALFCRDSS 465


>gi|307132369|ref|YP_003884385.1| 23S rRNA (Uracil-5-) -methyltransferase rumA [Dickeya dadantii
           3937]
 gi|306529898|gb|ADM99828.1| 23S rRNA (Uracil-5-) -methyltransferase rumA [Dickeya dadantii
           3937]
          Length = 444

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 94/211 (44%), Gaps = 19/211 (9%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           CL  D    R  +AG +L +      F Q N  IN  M+E  L       Q  +L+L+CG
Sbjct: 247 CLHGDMPSYR--IAGLSLAFS--PRDFIQVNDDINQRMVERALTWLDPQPQDRVLDLFCG 302

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            GNF+L LA     V+ VE     VE  R N   N +  V       +E         + 
Sbjct: 303 MGNFTLPLAARAGSVVGVEGVAALVEKGRENAQRNGLTQVTFYHHDLEE---------DV 353

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-ST 337
            R       S  F  I +DP R+G       +V+  P  ++YISCNP +L RD  +L + 
Sbjct: 354 TRQP---WASMGFDKILLDPARAGAPGVMPQIVKLAPRRVVYISCNPTTLARDSKVLMAA 410

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
            + + RLA+ D FP+T H+E   L +    G
Sbjct: 411 GYRLARLAMLDMFPHTGHLESMALFLLGSDG 441


>gi|323180215|gb|EFZ65767.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli 1180]
          Length = 160

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+L+CG GNF+L LA+    V+ VE     VE  + N   N + NV     + +E    
Sbjct: 17  VLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE---- 72

Query: 273 MRREREFNRLKDIDIHSYR---FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSL 328
                      D+    +    F  + +DP R+G       +++  P  I+Y+SCNP +L
Sbjct: 73  -----------DVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATL 121

Query: 329 CRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD  ++L   +TI RLA+ D FP+T H+E  VL  R
Sbjct: 122 ARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 158


>gi|117919559|ref|YP_868751.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. ANA-3]
 gi|143581951|sp|A0KU76|RUMA_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|117611891|gb|ABK47345.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. ANA-3]
          Length = 449

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 22/184 (11%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q NA IN  M    LEW LA   G +  +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 278 GNFVQVNAQINKTMVAQALEW-LAPQPGER--ILDLFCGMGNFSLPLAKLGAEVIGVEGV 334

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V  AR N AAN ++N+        + +  +  E    ++            + +DP 
Sbjct: 335 PEMVSQARENAAANGLSNLTFYH---GDLSADLSCEPWMGKI----------DKLLLDPA 381

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358
           R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + +++L L D FP T H+E 
Sbjct: 382 RAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEA 441

Query: 359 GVLL 362
             L 
Sbjct: 442 MALF 445


>gi|149244082|ref|XP_001526584.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448978|gb|EDK43234.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 407

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 83/161 (51%), Gaps = 21/161 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  + +  +V+ VE++  SV+ AR+N   N++ N   +   ++E    
Sbjct: 260 LVDAYCGSGLFSITCSTNVTKVIGVEVSADSVKFARHNATLNNIKNSHFIVGKAEEI--- 316

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KDID  S +  ++ +DPPR G DD  +  +  Y    I+YISCN  S  R
Sbjct: 317 ---------FKDIDTPSEQ-TSVILDPPRKGCDDVFLNQLSEYKPAKIVYISCNVHSQAR 366

Query: 331 DLS-ILSTT-----HTIERLALFDQFPYTRHMECGVLLVRK 365
           D+   L+ T     + +E +  FD FP T H+E   +L  K
Sbjct: 367 DVEWFLNNTKNGELYKVESIKGFDFFPQTHHVESVAVLSMK 407


>gi|221508798|gb|EEE34367.1| RNA methyltransferase, putative [Toxoplasma gondii VEG]
          Length = 426

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ YCG G F+L     FD V+  ++   S+E A+YN   N     +     +K F ++
Sbjct: 240 LLDCYCGVGLFALACHDDFDEVVGFDVCSSSIELAKYNAQFNSKWRARFEVSDAKNFFES 299

Query: 273 MRREREFNRLKDIDIHSYRFKT---IFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDS 327
                          HS   K+   + +DPPR G D +  + +++  P  I+YISC+P +
Sbjct: 300 FSAG-----------HSSSDKSRLFVVLDPPRKGCDSEFLLSLLKLKPERIVYISCHPAT 348

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             RDL  +   +T++ +  FD FP+TRH+EC + L R
Sbjct: 349 QARDLKAVLPLYTVKNIQPFDMFPHTRHIECVITLER 385


>gi|297587406|ref|ZP_06946051.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC
           53516]
 gi|297575387|gb|EFH94106.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC
           53516]
          Length = 442

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 20/204 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS 224
           Y  E LT     L +R    SF QPN      +    L     + G ++ +LYCG G  +
Sbjct: 255 YGKEYLTEKINGLEFRISPFSFFQPNPAQAEQIYNRALELAGDLSGKNVYDLYCGTGTIA 314

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
            + A+  + V+ VEI   +VE A+ N   N + N + +      F + + +       KD
Sbjct: 315 QIFAKKAESVIGVEIVAEAVEKAQENAELNGLTNTEFICDDCLNFMEKVEK-------KD 367

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTTHTI 341
           +         + +DPPR G+    +  ++   P   +YISCNP +   DL   +   + I
Sbjct: 368 V---------VVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYKI 418

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           + L  FDQFP T H E  VLL +K
Sbjct: 419 KSLEFFDQFPRTYHCEAVVLLEKK 442


>gi|332884588|gb|EGK04845.1| hypothetical protein HMPREF9456_00598 [Dysgonomonas mossii DSM
           22836]
          Length = 469

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 26/210 (12%)

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218
           E L   G   IY ++E         SF Q N+    + L  +      + GD L  +LY 
Sbjct: 273 EVLVWKGNDCIYEEMEGLKFKIGPKSFYQTNSE-QAYNLYKIARDFANLSGDELVYDLYT 331

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRRER 277
           G G  +  +A    +V+ +E  + ++  AR N   N ++N        K+  TQ    E 
Sbjct: 332 GTGTIANFVAGKAKKVIGIEYVEDAILDARVNSQINKIDNTLFYAGDMKDILTQDFINEH 391

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSIL 335
                        R   I  DPPR+G+ DD    ++ A P  I+Y+SCNP +  RDLS+L
Sbjct: 392 G------------RPDVIITDPPRAGMHDDVIKTILFAEPERIVYVSCNPATQARDLSLL 439

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + +E++   D FP+T H+E  VLLV+K
Sbjct: 440 DEKYKVEKVQPVDMFPHTHHVENVVLLVKK 469


>gi|156740571|ref|YP_001430700.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941]
 gi|156231899|gb|ABU56682.1| RNA methyltransferase, TrmA family [Roseiflexus castenholzii DSM
           13941]
          Length = 439

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 19/187 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            +F Q N      +L  + A      +G LL+LYCG G F+L LAR+   ++ VE    +
Sbjct: 265 TTFFQVNVAAAATLLNLIRAGLGDEARGRLLDLYCGAGAFTLPLARNAIEIVGVEEYAGA 324

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A  + A NH++NV+ +  S++              L ++D     F  + +DPPR G
Sbjct: 325 VADAERSAAVNHISNVRFITGSAEAV------------LANLD---GPFDAVVLDPPRRG 369

Query: 304 LDDATV-GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
                +  +++  P  I+Y+SC+P +L RDL ++++  + + R    D FP T H+E  V
Sbjct: 370 CHPRVLHALIERAPRRIVYVSCHPATLARDLKTLIAGGYAVVRATPVDLFPQTPHIESVV 429

Query: 361 LLVRKPS 367
            L+R  S
Sbjct: 430 ALMRAGS 436


>gi|259501117|ref|ZP_05744019.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           DSM 13335]
 gi|302190435|ref|ZP_07266689.1| RNA methyltransferase [Lactobacillus iners AB-1]
 gi|309806175|ref|ZP_07700192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 03V1-b]
 gi|259167811|gb|EEW52306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           DSM 13335]
 gi|308167456|gb|EFO69618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 03V1-b]
          Length = 450

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
              E              +   IFVDPPR GL D  +   V   P  I+YISCNP ++ R
Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +  +  +  + +   D FP T H+E  VLL +
Sbjct: 412 DLQVFQAAGYDFDCIDPVDMFPQTPHVETIVLLSK 446


>gi|260587415|ref|ZP_05853328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
           20583]
 gi|260542282|gb|EEX22851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
           20583]
          Length = 475

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 14/152 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E AR N   N + N +     ++E   A  
Sbjct: 328 DLYCGIGTISLFLAQKAKKVYGVEIVPAAIEDARKNAEINGIENAEFFVGKAEEVLPAKY 387

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
           +E                  I VDPPR G D A +  M+   P  I+Y+SC+  +L RDL
Sbjct: 388 KE-----------DGVYADVIVVDPPRKGCDGALIETMLSMKPERIVYVSCDSATLARDL 436

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
            +L    + +E++A+ D FP + H+E  VL++
Sbjct: 437 KVLCEKEYQVEKVAVCDMFPGSVHVETVVLMM 468


>gi|330949798|gb|EGH50058.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae Cit 7]
          Length = 451

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D +  RL      L +R     F Q NA +N  M+E  L      + + +++L+CG GNF
Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282
           +L LA     V+AVE     VE A  N  +N ++NV+  +   S+  T A          
Sbjct: 319 ALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340
              D  +  F  + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + 
Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           ++R  + D FP T H+E   L 
Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447


>gi|325507937|gb|ADZ19573.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA
           2018]
          Length = 460

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L+++  +V  VEI   ++E A+ N   N + N + +          
Sbjct: 315 VFDAYCGTGTISLFLSQNAKKVYGVEIIPEAIENAKINAKQNGIENTEFI---------V 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + E E  +L +  I     + + VDPPR G + + +  + +A P  I+Y+SC+P +L R
Sbjct: 366 GKSEEEIPKLIEKGIAP---EVVVVDPPRKGCEKSLLHSIAEASPKTIVYVSCDPATLSR 422

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL ILS   + +  +   D FP T H+E  VL+ R
Sbjct: 423 DLGILSELGYEVNEVQPVDMFPMTGHVETIVLIKR 457


>gi|15893813|ref|NP_347162.1| SAM-dependent methyltransferase [Clostridium acetobutylicum ATCC
           824]
 gi|50401652|sp|Q97LN4|Y523_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C0523
 gi|15023386|gb|AAK78502.1|AE007567_4 SAM-dependent methyltransferase related to
           tRNA(uracyl-5-)-methyltransferase (trmA family)
           [Clostridium acetobutylicum ATCC 824]
          Length = 460

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L+++  +V  VEI   ++E A+ N   N + N + +          
Sbjct: 315 VFDAYCGTGTISLFLSQNAKKVYGVEIIPEAIENAKINAKQNGIENTEFI---------V 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + E E  +L +  I     + + VDPPR G + + +  + +A P  I+Y+SC+P +L R
Sbjct: 366 GKSEEEIPKLIEKGIAP---EVVVVDPPRKGCEKSLLHSIAEASPKTIVYVSCDPATLSR 422

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL ILS   + +  +   D FP T H+E  VL+ R
Sbjct: 423 DLGILSELGYEVNEVQPVDMFPMTGHVETIVLIKR 457


>gi|312875412|ref|ZP_07735416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2053A-b]
 gi|311089075|gb|EFQ47515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2053A-b]
          Length = 450

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
              E              +   IFVDPPR GL D  +   V   P  I+YISCNP ++ R
Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +  +  +  + +   D FP T H+E  VLL +
Sbjct: 412 DLQVFQAAGYDFDCIDPVDMFPQTPHVETIVLLSK 446


>gi|300864706|ref|ZP_07109561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoria sp. PCC
           6506]
 gi|300337289|emb|CBN54709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoria sp. PCC
           6506]
          Length = 465

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 22/186 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           ++F Q N+     +L+ V+A    ++G+  L++ YCG G F+L LA+   + + +E+   
Sbjct: 296 DTFFQVNSEAAETLLQ-VIADELHLEGNEVLVDAYCGIGTFTLPLAKFVSKAIGLELQGA 354

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V+ A+ N   NH+ NV         +  A+      N L  +D+       + +DPPR 
Sbjct: 355 AVKQAQLNAELNHLTNVAF-------YVGAVE-----NLLPQLDVTP---DVVLLDPPRK 399

Query: 303 GLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358
           G D   +  +V   P  I YISC P +L RDL  L  +  + ++R+   D FP T H+EC
Sbjct: 400 GCDRTVLETLVATQPSRIAYISCKPSTLARDLKFLCQNGGYKLQRVQPADFFPQTPHVEC 459

Query: 359 GVLLVR 364
              LVR
Sbjct: 460 AAFLVR 465


>gi|294784025|ref|ZP_06749347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           1_1_41FAA]
 gi|294479837|gb|EFG27616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           1_1_41FAA]
          Length = 458

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 163/387 (42%), Gaps = 54/387 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-VPNLQI---FRSEPIH-YRMR--AEFHIWHDGDDLYHI 61
           +YE QL  K   + ++M     +P+++I     SE ++ YR +    F ++  G+ +   
Sbjct: 93  KYESQLKYKKLMVEEVMRKIAGLPDIEISDVLASEDVYNYRNKIIEPFSVY--GNKIITG 150

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMAT-----------IRLEPLLRAKLFQIDYL 110
            F +++ E   +D  +  S L N ++ E+              I  + LLR  + + +  
Sbjct: 151 FFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNVMIRTN-- 208

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
            S ++  +V +I    + +  +    RLR+ +   K  I +   + KT   +     D+ 
Sbjct: 209 -SNNEAMLVLIINSNKITENIKNLLFRLREKIEEIK-SIYISLNSKKTNTVIG----DKN 262

Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
           + + G   I   +          SF Q N      + +  +     I    +++ Y G G
Sbjct: 263 IFIYGEKSIKENLNGIEFHISPTSFFQINVKQAKRLYDIAINFFDNIDDKYIVDAYSGTG 322

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFN 280
              +++A+   +V A+EI K + E        N + N++ +  S  KE    +   +   
Sbjct: 323 TIGMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGSVEKELVNLINANK--- 379

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT 338
                     R  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S  
Sbjct: 380 ----------RIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEK 429

Query: 339 -HTIERLALFDQFPYTRHMECGVLLVR 364
            + +++L   D FP T H+EC  L+ R
Sbjct: 430 GYVLKKLQAVDMFPQTSHIECVGLIER 456


>gi|229015810|ref|ZP_04172786.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
 gi|229022017|ref|ZP_04178573.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
 gi|228739273|gb|EEL89713.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
 gi|228745469|gb|EEL95495.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
          Length = 459

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 168/382 (43%), Gaps = 44/382 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    V + +    A   + G+  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGNEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++E A+ N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL RD++ L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVNALMQSYEVEY 437

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T H+E  V LVRK
Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459


>gi|300814227|ref|ZP_07094503.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300511651|gb|EFK38875.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 441

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 24/210 (11%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           I   RDYV E L      L ++    SF Q N     ++ +        +QG  +L+LYC
Sbjct: 250 ILYGRDYVIEELL----GLKFKIGTFSFFQTNTYSAAYLYQLAFDMIDNLQGKKVLDLYC 305

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  S V A+  + VL VEI + +V AAR N   N+++NV  +     +          
Sbjct: 306 GTGTISQVFAQKAESVLGVEIVEEAVNAARENAQYNNISNVDFIAGDVAKV--------- 356

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYP-HILYISCNPDSLCRDLS-I 334
              + D+DI +     I +DPPR G+++  A   ++   P   LYISCNP S  +D+   
Sbjct: 357 ---VNDLDIKA---DIIILDPPRVGINNPKALDKIIDFSPEEFLYISCNPISYVKDVKRF 410

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +   + ++++   DQFP T ++E   LL +
Sbjct: 411 IERGYKLKKIVGLDQFPRTVNLELISLLEK 440


>gi|330960598|gb|EGH60858.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 451

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 88/182 (48%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q NA +N  M+E  L     G    +++L+CG GNF+L LA     V+AVE     
Sbjct: 279 GDFIQVNAAVNTAMIEQALQWLAPGPDERVMDLFCGLGNFALPLAGLAKEVVAVEGVATM 338

Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           VE A  N  +N ++NV+  +   S+  T A             D  +  F  + +DPPR 
Sbjct: 339 VERAAANAMSNDLHNVQFFQADLSQPLTHA-------------DWAAEGFSAVLLDPPRD 385

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGV 360
           G  +    + +     +LY+SCNP +L RD + +++  + ++R  + D FP T H+E   
Sbjct: 386 GAFEVVRQIRKTGARRLLYVSCNPATLARDTVELVNQGYRLKRAGILDMFPQTAHVEAMA 445

Query: 361 LL 362
           L 
Sbjct: 446 LF 447


>gi|251783009|ref|YP_002997312.1| putative RNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391639|dbj|BAH82098.1| putative RNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127818|gb|ADX25115.1| RNA methyltransferase, TrmA family protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 452

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 159/383 (41%), Gaps = 48/383 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPAGYEQFEIRHTKGMKKPDHYRAKLQFQLRSFGGSVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYL----T 111
           F Q +   + IDY     L+ +AL  E++ +I       RL       +  I  +     
Sbjct: 149 FSQGSHRLVPIDY----CLVQDALTQEIINSITQLVDKYRLPVYNERNIAGIRTVMVRKA 204

Query: 112 SQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
             SDQ  + ++  +      L+ D  +        AL+  + +   I    +T+I   ++
Sbjct: 205 QASDQVQIIIVSSKEISLAGLIGDVTKAFPQIKMVALNINRSKSSDI-YGEETEILWGQE 263

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
            + E +   G  L  R    +F Q N     V   E V A   G+   +++ YCG G+  
Sbjct: 264 AIHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGVTDHIIDAYCGVGSIG 319

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
              A     V  ++I   ++E A+ N  A   +N          + +A + E    +   
Sbjct: 320 FAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK 370

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342
                YR   I VDPPR+GLD+  +  +  Y    ++Y+SCN  +L RDL  L+T + + 
Sbjct: 371 ---QGYRADAIIVDPPRTGLDEKLLKTILRYQPKQMVYVSCNTSTLARDLIQLATVYDVH 427

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T   E  V L +K
Sbjct: 428 YIQSVDMFPHTARTEAVVKLQKK 450


>gi|242238299|ref|YP_002986480.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya dadantii
           Ech703]
 gi|242130356|gb|ACS84658.1| RNA methyltransferase, TrmA family [Dickeya dadantii Ech703]
          Length = 442

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 86/186 (46%), Gaps = 27/186 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+          +L+L+CG GNF+L LAR    V+ VE    
Sbjct: 269 FIQVNDEVNQRMVAQALEWL---DPQPHERVLDLFCGMGNFTLPLARRAASVVGVEGVAA 325

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N   NV     + +E               D+    +    F  I +DP
Sbjct: 326 LVEKGRENAERNAFGNVTFFHQNLEE---------------DVTRQPWAAQGFDKILLDP 370

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357
            R+G       +V+  P  ++YISCNP +L RD  + L+  + +E+LA+ D FP+T H+E
Sbjct: 371 ARAGAPGVMSQIVKLTPGRVVYISCNPTTLARDSRVLLAAGYRLEKLAMLDMFPHTGHLE 430

Query: 358 CGVLLV 363
              L +
Sbjct: 431 SMALFL 436


>gi|145220570|ref|YP_001131279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206734|gb|ABP37777.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 484

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 18/200 (9%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
           L    + E+L +    L +R   NSF Q N      +   +  A +   GD + +LYCG 
Sbjct: 283 LGSGTISEKLGL----LEFRISANSFFQTNTLQAEALYGRIQDACELRAGDRVYDLYCGT 338

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +L LARH +R + +E+ + S++ AR N  +N + N    +   K+    M R  E  
Sbjct: 339 GTITLWLARHAERAIGLEVVESSIQDARSNAESNGIGNAYFFQTDLKDLGAMMERLEEHG 398

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQ-AYPHILYISCNPDSLCRD-LSILST 337
           R  D+         I  DPPR+G+   A   M++     I+Y+SCNP SL RD   I   
Sbjct: 399 R-PDV---------IVTDPPRAGMHPKALETMLKLGARRIVYVSCNPASLARDGKEIAGA 448

Query: 338 THTIERLALFDQFPYTRHME 357
            + +  +   D FP+T H+E
Sbjct: 449 GYRLVSVEPVDMFPHTAHIE 468


>gi|260662798|ref|ZP_05863692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552879|gb|EEX25878.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           fermentum 28-3-CHN]
          Length = 458

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 22/165 (13%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +++ YCG G  SL +A+H   V  VEI   ++  A+ N A N + N   V   
Sbjct: 305 GLDGSQTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV--- 361

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321
                   + E +F + +       +   + VDPPR GLD    +AT  M  A   ++Y+
Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLDAQLIEATGKM--APQKVIYV 410

Query: 322 SCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP +L RDL   +    H  + +   DQFP T H+E   +L R
Sbjct: 411 SCNPATLVRDLQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLER 455


>gi|24374962|ref|NP_719005.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella oneidensis
           MR-1]
 gi|50401580|sp|Q8EBQ3|RUMA_SHEON RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|24349686|gb|AAN56449.1|AE015782_1 RNA methyltransferase, TrmA family [Shewanella oneidensis MR-1]
          Length = 449

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 24/202 (11%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGN 222
           +D++  V   +L +     +F Q NA IN  M    L+W LA   G +  +L+L+CG GN
Sbjct: 262 LDDKTDVQPVSLTF--TPGNFVQVNAQINKAMVAQALDW-LAPQPGER--ILDLFCGMGN 316

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           FSL LAR    V+ VE     V  AR N  AN ++N+        + +  +  E    ++
Sbjct: 317 FSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYH---GDLSADLSSEPWMGKI 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHT 340
                       + +DP R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + 
Sbjct: 374 DK----------LLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYK 423

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           +++L L D FP T H+E   L 
Sbjct: 424 LQKLGLIDMFPQTHHIEAMALF 445


>gi|125977774|ref|XP_001352920.1| GA17699 [Drosophila pseudoobscura pseudoobscura]
 gi|54641671|gb|EAL30421.1| GA17699 [Drosophila pseudoobscura pseudoobscura]
          Length = 631

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 20/167 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  +L  A+H  RVL VEI   +++ A++N  AN + N K    ++ +F ++
Sbjct: 414 MLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEANGIKNCKFFTGNADDFIKS 473

Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS 327
           M RE  + +   K +D+         VDPPR+GL + ++  +++   I   +Y+SCNP S
Sbjct: 474 MVREAMYEQEPGKPVDL------IAVVDPPRAGLHNRSIAAIRSASAINRLVYVSCNPHS 527

Query: 328 LCRDLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVRK 365
             R+   L+   +          +     D FP+T H E  +L  R+
Sbjct: 528 AKRNFIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELVILFERE 574


>gi|315641084|ref|ZP_07896163.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
           15952]
 gi|315483092|gb|EFU73609.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
           15952]
          Length = 465

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 26/220 (11%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
           ++G  N+  +   + Y++++L   G+T  +R    SF Q N      + +  +   +  +
Sbjct: 263 IMGPTNR--VLYGKSYIEDQLL--GKT--FRISAQSFYQVNTEQAEKLYQVAMDFAQLSK 316

Query: 211 GD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            D +++ Y G G   L LA   D V  +EI   +V+ A+ N A N + N   +   +++ 
Sbjct: 317 NDTVVDAYSGIGTIGLSLADKVDHVYGMEIVAEAVKDAQTNAAINGITNATYLEGKAEKI 376

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNP 325
                RE              +   +FVDPPR GLD    DAT  M      ++YISCNP
Sbjct: 377 MHQWAREE------------VQPTVVFVDPPRKGLDASFIDATCEMQPE--RVVYISCNP 422

Query: 326 DSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
            ++ RD+ + +   + +E++   D FP T H+EC  LL R
Sbjct: 423 ATMARDVKLFAEKGYQLEKVQPVDLFPQTVHVECVGLLTR 462


>gi|226310296|ref|YP_002770190.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
           100599]
 gi|226093244|dbj|BAH41686.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus
           brevis NBRC 100599]
          Length = 485

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 14/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+    V  VEI   ++  A  N   N V N       ++    A
Sbjct: 334 VIDAYCGIGTISLFLAQKSKHVYGVEIVPEAIADANRNAQLNGVENATFEAGPAEVVIPA 393

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
            + +              R   I VDPPR G D+A +  + +  P  ++Y+SCNP +L R
Sbjct: 394 WKEK------------GIRADVIVVDPPRKGCDEALLTTILEMQPERVVYVSCNPSTLAR 441

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +L+  + ++ +   D FP+T H+E   +LVR
Sbjct: 442 DLKVLAERYEVKEVQPVDMFPHTGHVESVAVLVR 475


>gi|213971908|ref|ZP_03400008.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato
           T1]
 gi|301384478|ref|ZP_07232896.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060512|ref|ZP_07252053.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. tomato K40]
 gi|302132004|ref|ZP_07257994.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213923333|gb|EEB56928.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato
           T1]
          Length = 451

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 21/184 (11%)

Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
             F Q NA +N  M+E    W+  A       +++L+CG GNF+L LA     V+AVE  
Sbjct: 279 GDFIQVNAAVNTAMIEQALHWLAPAA---DERVMDLFCGLGNFALPLASLAKEVVAVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              VE A  N  +N ++N   VR    + +Q          L  +D  +  F  + +DPP
Sbjct: 336 ATMVERAAVNAMSNDLHN---VRFFQADLSQP---------LTHVDWAAEGFSAVLLDPP 383

Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358
           R G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP T H+E 
Sbjct: 384 RDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVEA 443

Query: 359 GVLL 362
             L 
Sbjct: 444 MALF 447


>gi|149197270|ref|ZP_01874322.1| RNA methyltransferase-like protein [Lentisphaera araneosa HTCC2155]
 gi|149139816|gb|EDM28217.1| RNA methyltransferase-like protein [Lentisphaera araneosa HTCC2155]
          Length = 409

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/264 (29%), Positives = 114/264 (43%), Gaps = 42/264 (15%)

Query: 111 TSQSDQAIVTLIYHRLLDDA-----WRECAIRLRDAL-HARKYQIQLIGRANKTKICLDR 164
           TS +D+A +  I  +LLD+      W     RL D+L   RK+     G+   T+  L R
Sbjct: 177 TSSADEAKLEQIAQKLLDEGVQSVYWNVNDNRLDDSLGECRKF----WGQEFITENLLGR 232

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           D++   LT              F Q N  +       V    K  Q   + +LY G    
Sbjct: 233 DFILGPLT--------------FFQANHDVASAAYTSVRNFIKECQPKKIHDLYSGTCTM 278

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            ++     D V AVE    +V  A  N+ AN + NVK +     EF +    E EF+ L 
Sbjct: 279 PVIFGDLVDSVTAVENFPENVRMAEKNLKANGIENVKFIEQDVAEFLKQSDLEMEFSVL- 337

Query: 284 DIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTI 341
                         +PPR G+ + A   +++  P ++ Y+SC+P SL  DL IL   +  
Sbjct: 338 --------------NPPRKGMHEQALRRILELAPDNLAYLSCSPRSLLEDLGILFREYKP 383

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
            ++ LFD FP T H E  VLL +K
Sbjct: 384 LKIQLFDMFPQTEHFETLVLLTKK 407


>gi|184155945|ref|YP_001844285.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|183227289|dbj|BAG27805.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
          Length = 458

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 22/165 (13%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +++ YCG G  SL +A+H   V  VEI   ++  A+ N A N + N   V   
Sbjct: 305 GLDGSQTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV--- 361

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321
                   + E +F + +       +   + VDPPR GLD    +AT  M  A   ++Y+
Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLDAQLIEATGKM--APQKVIYV 410

Query: 322 SCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP +L RDL   +    H  + +   DQFP T H+E   +L R
Sbjct: 411 SCNPATLVRDLQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLER 455


>gi|306820250|ref|ZP_07453891.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551704|gb|EFM39654.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 18/183 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF Q N      + +  +    G +  + +LY G G   + L+    +V+ +EI + +VE
Sbjct: 283 SFFQTNTKGAETLYKTAMEMIDGEKDIIFDLYSGTGTIGISLSARAKKVIGIEIVEEAVE 342

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N  AN+V NV+ +    KE    +    +                I +DPPR+G++
Sbjct: 343 MARENAQANNVKNVEFIAGDVKEEVSKLTNSPQL---------------IILDPPRAGIN 387

Query: 306 DATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
              +  +  +    ILYISCNP  L +DL +L    + I ++   D F  T H E  VL+
Sbjct: 388 PKALKDIIGFNSKQILYISCNPKMLVQDLKVLKEAGYEIAKVKGVDMFANTYHCETVVLM 447

Query: 363 VRK 365
            RK
Sbjct: 448 SRK 450


>gi|227515533|ref|ZP_03945582.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           fermentum ATCC 14931]
 gi|227086146|gb|EEI21458.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           fermentum ATCC 14931]
          Length = 458

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 22/165 (13%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +++ YCG G  SL +A+H   V  VEI   ++  A+ N A N + N   V   
Sbjct: 305 GLDGSKTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV--- 361

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321
                   + E +F + +       +   + VDPPR GLD    +AT  M  A   ++Y+
Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLDAQLIEATGKM--APQKVIYV 410

Query: 322 SCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP +L RDL   +    H  + +   DQFP T H+E   +L R
Sbjct: 411 SCNPATLVRDLQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLER 455


>gi|320323402|gb|EFW79490.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320327599|gb|EFW83611.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 451

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 19/202 (9%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D +  RL      L +R     F Q NA +N  M+E  L      + + +++L+CG GNF
Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282
           +L LA     V+AVE     VE A  N  +N ++NV+  +   S+  T A          
Sbjct: 319 ALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340
              D  +  F  + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + 
Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYR 425

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           ++R  + D FP T H+E   L 
Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447


>gi|255507354|ref|ZP_05382993.1| rRNA methyltransferase [Chlamydia trachomatis D(s)2923]
 gi|289525786|emb|CBJ15267.1| rRNA methyltransferase [Chlamydia trachomatis Sweden2]
 gi|296435362|gb|ADH17540.1| rRNA methyltransferase [Chlamydia trachomatis E/150]
 gi|296439079|gb|ADH21232.1| rRNA methyltransferase [Chlamydia trachomatis E/11023]
          Length = 396

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 43/255 (16%)

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
             LLD      +I   + L AR           +T       ++ ++L++ GR+ ++   
Sbjct: 169 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 223

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232
             SF QP +          L A K IQ             LL+LYCG G   ++LA +  
Sbjct: 224 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGTIGILLAPYVK 273

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +++ VE+   +V +A+ NI  N V ++++    +K+F +  R E     L   DI     
Sbjct: 274 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 321

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++ S+L    + + R+   DQ
Sbjct: 322 --VVIDPPRCGMQNKALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRRMQPIDQ 379

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E  VLL R
Sbjct: 380 FPHTNHLENIVLLER 394


>gi|165871358|ref|ZP_02216006.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
 gi|170708771|ref|ZP_02899208.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
 gi|164712842|gb|EDR18371.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
 gi|170126350|gb|EDS95240.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
          Length = 454

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + + L D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQLVDMFPHTTHVEC 447


>gi|297528755|ref|YP_003670030.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
 gi|297252007|gb|ADI25453.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
          Length = 457

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 17/150 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LAR    V  VEI   ++E A+ N   N + NV     ++++    
Sbjct: 314 VIDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAKPNGIQNVTFEVGAAEDVIPR 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
              E              R   + VDPPR G D + +  + A   P ++Y+SCNP +L R
Sbjct: 374 WYEE------------GIRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLAR 421

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMEC 358
           DL IL      TIE +   D FP+T H+EC
Sbjct: 422 DLRILEDGGYETIE-VQPVDMFPHTAHVEC 450


>gi|221488294|gb|EEE26508.1| RNA methyltransferase, putative [Toxoplasma gondii GT1]
          Length = 426

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ YCG G F+L     FD V+  ++   S+E A+YN   N     +     +K F ++
Sbjct: 240 LLDCYCGVGLFALACHDDFDEVVGFDVCSSSIELAKYNAQFNSKWRARFEVSDAKNFFES 299

Query: 273 MRREREFNRLKDIDIHSYRFKT---IFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDS 327
                          HS   K+   + +DPPR G D +  + +++  P  I+YISC+P +
Sbjct: 300 FSAG-----------HSSSDKSRLFVVLDPPRKGCDSEFLLSLLKLKPERIVYISCHPAT 348

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             RDL  +   +T++ +  FD FP+TRH+EC + L R
Sbjct: 349 QARDLKAVLPLYTVKNIQPFDMFPHTRHIECVITLER 385


>gi|254423658|ref|ZP_05037376.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
           7335]
 gi|196191147|gb|EDX86111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
           7335]
          Length = 483

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 21/160 (13%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + GD  +++ YCG G F+L LAR   + + +E +  SV  A+ N A N + NV       
Sbjct: 337 LTGDEVIVDAYCGVGTFTLPLARQVKQCIGLESSTESVVQAQENAALNGIENV------- 389

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
                  R       L D+D+   +   + +DPPR G + A +  +V   P  I+Y+SCN
Sbjct: 390 -----GFRIGDVAALLPDLDV---KPDILLLDPPRKGCELAVLESIVAIKPKRIVYVSCN 441

Query: 325 PDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362
           P +L RDL +LS T  + + R+   D FP T H+EC V L
Sbjct: 442 PATLARDLRVLSETGGYRVTRVQPADFFPQTAHVECAVFL 481


>gi|153940444|ref|YP_001392724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. Langeland]
 gi|152936340|gb|ABS41838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. Langeland]
 gi|295320705|gb|ADG01083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. 230613]
          Length = 461

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E    
Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV--- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    + D+     +   + VDPPR G +   +  + A     I+Y+SC+P +L R
Sbjct: 373 ---------IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLAR 423

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL IL+   +  + +   D FP T H+E  VLL RK
Sbjct: 424 DLGILNELGYETKEVQPVDMFPQTSHVETCVLLQRK 459


>gi|213421252|ref|ZP_03354318.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 170

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE  + 
Sbjct: 1   FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVQA 57

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 58  LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 102

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 103 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 162

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 163 SMVLFER 169


>gi|163816191|ref|ZP_02207559.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759]
 gi|158448611|gb|EDP25606.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759]
          Length = 495

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 15/161 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   +  +    +V+ VE+ + +V  AR N+  N + NV I    +  F   
Sbjct: 342 VIDAYCGIGTIGIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRF--- 398

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPH-ILYISCNPDSLCR 330
                    + D+         +F+DPPRSG  ++    ++   P  ++YISC P+SL R
Sbjct: 399 ---------MVDVADEGDSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLAR 449

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           DL  ++   + + R+   D FP TR +E  VLL R  +G H
Sbjct: 450 DLKYMTKHGYQVIRMTPVDMFPLTRGVETVVLLTRAGAGQH 490


>gi|30260503|ref|NP_842880.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|47525600|ref|YP_016949.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183346|ref|YP_026598.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|65317755|ref|ZP_00390714.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Bacillus anthracis str.
           A2012]
 gi|167634215|ref|ZP_02392537.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
 gi|167640112|ref|ZP_02398379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
 gi|170688363|ref|ZP_02879572.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
 gi|177653642|ref|ZP_02935781.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
 gi|190567579|ref|ZP_03020492.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812998|ref|YP_002813007.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
           684]
 gi|229601940|ref|YP_002864948.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
 gi|254686717|ref|ZP_05150575.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724793|ref|ZP_05186576.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           A1055]
 gi|254742321|ref|ZP_05200007.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Kruger B]
 gi|254756096|ref|ZP_05208125.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Vollum]
 gi|254761914|ref|ZP_05213763.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Australia 94]
 gi|50401540|sp|Q81ZD6|Y333_BACAN RecName: Full=Uncharacterized RNA methyltransferase
           BA_0333/GBAA_0333/BAS0318
 gi|30253871|gb|AAP24366.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames]
 gi|47500748|gb|AAT29424.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177273|gb|AAT52649.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne]
 gi|167511923|gb|EDR87302.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
 gi|167530529|gb|EDR93244.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
 gi|170667695|gb|EDT18449.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
 gi|172081222|gb|EDT66297.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
 gi|190561366|gb|EDV15338.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007157|gb|ACP16900.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
           684]
 gi|229266348|gb|ACQ47985.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
          Length = 458

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + + L D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQLVDMFPHTTHVEC 451


>gi|15643851|ref|NP_228900.1| RNA methyltransferase, putative [Thermotoga maritima MSB8]
 gi|50401706|sp|Q9X0H9|Y1094_THEMA RecName: Full=Uncharacterized RNA methyltransferase TM_1094
 gi|4981638|gb|AAD36170.1|AE001768_19 RNA methyltransferase, putative [Thermotoga maritima MSB8]
          Length = 439

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 21/185 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            +F Q N  I   +++ V    + +QG+  +L+LY G G FS+  +    RV++VE ++ 
Sbjct: 268 TAFFQSNYSITSKLIDHVYRE-QALQGNEVVLDLYAGIGTFSVRTSFSAARVISVESSRV 326

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V+A + N   N   N++ V     +F            LK+   +S R   I +DPPRS
Sbjct: 327 AVKAGKANANINSRKNIEYVEQDVLDF------------LKN---YSGRADRIILDPPRS 371

Query: 303 GLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           G     +  +   +   I+Y+SC+P +L RDL +L    ++I R+  FD FP T H+E  
Sbjct: 372 GAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGYSIVRVKPFDMFPQTYHVETA 431

Query: 360 VLLVR 364
           V LV+
Sbjct: 432 VTLVK 436


>gi|254739058|ref|ZP_05196760.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Western North America USA6153]
          Length = 404

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 261 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 320

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 321 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 368

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + + L D FP+T H+EC
Sbjct: 369 DLKVLEEGGYKTQEVQLVDMFPHTTHVEC 397


>gi|225174261|ref|ZP_03728260.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT
           1]
 gi|225170046|gb|EEG78841.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT
           1]
          Length = 455

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G  SL LAR   +V+ VE  + +V  AR N   N++ N +    +++     
Sbjct: 312 VFDLYCGIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEFHTGTAETVVPR 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330
           + ++             Y    + VDPPR G D+  +  + A  P  I+Y+SCNP +L R
Sbjct: 372 LFKQ------------GYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLAR 419

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L     + IE   + D FP+T H+E  VLL RK
Sbjct: 420 DLKYLQQNGYNPIEAQPV-DMFPHTSHVETVVLLERK 455


>gi|313904339|ref|ZP_07837717.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6]
 gi|313470889|gb|EFR66213.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6]
          Length = 437

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 159/389 (40%), Gaps = 63/389 (16%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYR--MRAEFHIWHDGDDLYHIMFDQQT 67
           YE+QLA K  ++R +M              P HYR  + A F    DG  +  I +++ T
Sbjct: 75  YEEQLAIKEKQVRCLMEGIAKVRPVTGMENPYHYRNKVNAAFQRKRDGKIVSGI-YEEGT 133

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDYLTS-----------QSD 115
              + +       L+ +    E++ TIR L    + +++  D+ +             S 
Sbjct: 134 HNVIPVS----SCLIEDQKADEIIGTIRRLALSFKVRIYDEDHGSGLLRHVMIRRGHVSG 189

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           Q +V L+    +  +       LR A H     + L     +T + L        +T+ G
Sbjct: 190 QILVILVVASPVFPSKNNFVKALR-AAHPEITSVVLNVNDKQTSMVLG----SRNITLYG 244

Query: 176 RTLI--------YRQIENSFTQPNA-------GINVHMLEWVLAATKGIQGDLLELYCGN 220
           +  I        +R   +SF Q N+       G  + + E     T      + + YCG 
Sbjct: 245 KGYIEDILCGCRFRISPSSFYQINSVQTEKLYGKAIELAELTGEET------VFDAYCGI 298

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   +  +    RV+ VE+ K +V  A  N   N + N++     +  F           
Sbjct: 299 GTIGITASAGAGRVIGVELNKDAVRDAAINAKLNDIPNIRFYADDAGRF----------- 347

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY----PHILYISCNPDSLCRDLSILS 336
            L ++     +   +F+DPPRSG  +  V M  A+      I+Y+SC+P+++ RDL  L 
Sbjct: 348 -LTEMAARGEKADVLFMDPPRSGSTE--VFMKAAFEMEPSRIVYVSCDPETMARDLRYLR 404

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  +  FD FP+TR +EC  +L RK
Sbjct: 405 KNYNVGEIWPFDMFPWTRSIECVTVLKRK 433


>gi|322807691|emb|CBZ05266.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402
           065]
          Length = 467

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++   +V AVEI K +++ A+ N   N ++N +     S+E    
Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYAVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV--- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    + D+     +   + VDPPR G +   +  + A     I Y+SC+P +L R
Sbjct: 373 ---------IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIAYVSCDPGTLAR 423

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL IL+   +  +++   D FP T H+EC V + R
Sbjct: 424 DLGILNELGYETKKVQPVDMFPQTSHVECVVRIER 458


>gi|195171542|ref|XP_002026564.1| GL21973 [Drosophila persimilis]
 gi|194111480|gb|EDW33523.1| GL21973 [Drosophila persimilis]
          Length = 296

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 22/178 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           ++A TK     +L++ CG G  +L  A+H  RVL VEI   +++ A++N  AN + N K 
Sbjct: 70  LVAPTKNTT--MLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEANGIKNCKF 127

Query: 262 VRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI- 318
              ++ +F ++M RE  + +   K +D+ +       VDPPR+GL + ++  +++   I 
Sbjct: 128 FTGNADDFIKSMVREAMYEQEPGKPVDLIA------VVDPPRAGLHNRSIAAIRSASAIN 181

Query: 319 --LYISCNPDSLCRDLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVRK 365
             +Y+SCNP S  R+   L+   +          +     D FP+T H E  +L  R+
Sbjct: 182 RLVYVSCNPHSAKRNFIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELVILFERE 239


>gi|253578497|ref|ZP_04855769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850815|gb|EES78773.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 386

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 167/380 (43%), Gaps = 44/380 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM---FDQQ 66
           Y++QLA K  R+++++  F      I   +P +YR +   H   D D   +I+   ++ +
Sbjct: 24  YKEQLAAKQKRMKKLLGKFANVKPIIGMDDPFYYRNKV--HAVFDRDKKGNIICGTYEAK 81

Query: 67  TKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQSD 115
           T + + I+  M    +   ++    +M+ + R++         LLR  L +  + T   D
Sbjct: 82  THKVVPIEECMIEDKISQEIIRTIRDMLKSFRIKTYDEDTGYGLLRHVLVRRGFFT---D 138

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-----R 170
           + +V ++    +  +       LR         +  +     + +  +RD V       R
Sbjct: 139 EIMVVIVIGSPIFPSKNNFVKALRKKYPQITTVVLNVNDKKTSMVLGERDIVIYGKGYIR 198

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHML--EWVLAATKGIQGDLLELYCGNGNFSLVLA 228
            T+ G T  +R    SF Q N  +   +L    +  A  G +  +++ YCG G   LV A
Sbjct: 199 DTLCGCT--FRISPQSFYQVNP-VQTEILYKTAIEYAGLGRKETVIDAYCGIGTIGLVAA 255

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V+ VE+   +V  AR N   N + N +  +  + EF + M    E         H
Sbjct: 256 KRAKNVIGVELNPDAVRDARINAKENKITNARFYQGDAGEFMENMAENGE---------H 306

Query: 289 SYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345
           +     +F+DPPR+G D   +  +++  P  I+YISC P++L RDL  L+   + + ++ 
Sbjct: 307 A---DVVFMDPPRTGSDKKFMSSVIKLNPSRIVYISCGPETLARDLEYLTKHGYDVRKIQ 363

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D F +T H E   LL +K
Sbjct: 364 PVDMFSFTDHCENICLLTKK 383


>gi|308801098|ref|XP_003075330.1| COG2265: SAM-dependent methyltransferases related to tRNA (ISS)
           [Ostreococcus tauri]
 gi|116061884|emb|CAL52602.1| COG2265: SAM-dependent methyltransferases related to tRNA (ISS)
           [Ostreococcus tauri]
          Length = 363

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 142/296 (47%), Gaps = 40/296 (13%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYH---RLLDDAWRECA--IRLRDALHARKYQIQLIGR 154
           +R  +  ++ L+ +    IV    H    L +D WR  A  +R RD     +  + ++ +
Sbjct: 76  VRESIRAVNVLSIRDGTEIVLASTHARETLDEDEWRTFAETVRARD-----ERVVGVVCK 130

Query: 155 ANKTKICL--DRDYVDERLTVAG-RTLIYRQIENSFTQPNAGIN----VHMLEWVLAATK 207
             K    L  DRDYV E++ +   RT+     E SF+ PN  +     +H+ ++  A T+
Sbjct: 131 RKKMPNALVGDRDYVVEKMGLPNERTVRLIHREGSFSNPNGDVAEQTAIHLCDYFDALTR 190

Query: 208 GIQGD---LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV--NNVK 260
             + +    +ELY G GN ++ +A +F +    AVE+    VEAAR N A N +  N  +
Sbjct: 191 SSEDEEYTFVELYAGCGNHTVCVAPYFAKRGAYAVEVDANLVEAARENFALNGLSENFAR 250

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318
           +V M ++E+ ++          + I   + R   + VDPPR+GLD  T+  V   A+  +
Sbjct: 251 VVCMPAEEWVRS-------EDARAISGEAGRV-ALLVDPPRAGLDARTLDFVTASAFDVV 302

Query: 319 LYISCNPDSLCRDL-----SILSTTHTIERLALFDQFPYT-RHMECGVLLVRKPSG 368
           +Y++C+  SL RD+        +  + +  LA+FD  P + R +E      RK S 
Sbjct: 303 VYVACDHSSLRRDVDDPEHGFEARGYEMRTLAVFDHAPTSARWIEVVATFHRKSSA 358


>gi|223042058|ref|ZP_03612234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus minor
           202]
 gi|223017133|gb|EEF15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus minor
           202]
          Length = 440

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 15/181 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q NA  N  M+   L      + D +L+L+CG GNF+L LA+    V+ VE  +  V 
Sbjct: 270 FIQVNAEQNQKMVAQALNWLALEKSDRVLDLFCGMGNFTLPLAQQAGYVVGVEGVEEMVV 329

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N   N ++NV   + +  E            R  D    +  F  + +DP R G  
Sbjct: 330 TARQNAVENQLDNVAFYQTNLDE------------RFVDQPWATEAFNKVLLDPARHGAY 377

Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
            A   + +  P  I+Y+SCNP +L RD   ++ + +++ ++A+ D FP+T H+E   L V
Sbjct: 378 FALDHLCELNPERIVYVSCNPATLVRDAEKLIKSGYSLAKVAVIDMFPHTGHLESISLFV 437

Query: 364 R 364
           +
Sbjct: 438 K 438


>gi|237833067|ref|XP_002365831.1| tRNA (Uracil-5-)-methyltransferase domain-containing protein
           [Toxoplasma gondii ME49]
 gi|211963495|gb|EEA98690.1| tRNA (Uracil-5-)-methyltransferase domain-containing protein
           [Toxoplasma gondii ME49]
          Length = 426

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ YCG G F+L     FD V+  ++   S+E A+YN   N     +     +K F ++
Sbjct: 240 LLDCYCGVGLFALACHDDFDEVVGFDVCSSSIELAKYNAQFNSKWRARFEVSDAKNFFES 299

Query: 273 MRREREFNRLKDIDIHSYRFKT---IFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDS 327
                          HS   K+   + +DPPR G D +  + +++  P  I+YISC+P +
Sbjct: 300 FSAG-----------HSSSDKSRLFVVLDPPRKGCDSEFLLSLLKLKPERIVYISCHPAT 348

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             RDL  +   +T++ +  FD FP+TRH+EC + L R
Sbjct: 349 QARDLKAVLPLYTVKNIQPFDMFPHTRHIECVITLER 385


>gi|78187968|ref|YP_376011.1| 23S rRNA methyltransferase [Chlorobium luteolum DSM 273]
 gi|78167870|gb|ABB24968.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium luteolum DSM 273]
          Length = 476

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 14/191 (7%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           L +R   NSF Q N      +   +L AA    +  + +LYCG G  +L +ARH    + 
Sbjct: 295 LDFRISANSFFQTNTRQAEALYACILRAAGLKAEDTVYDLYCGTGTITLFMARHCRMAVG 354

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E+ + S++ AR N   N + N    +   K+F            L  +D +  R   + 
Sbjct: 355 LEVVESSIQDARANAEFNSIRNAVFFQADLKDFG---------TLLPTLDSYG-RPDVVV 404

Query: 297 VDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYT 353
            DPPR+G+   A   MVQ     I+Y+SCNP SL RD   I +  + +E +   D FP+T
Sbjct: 405 TDPPRAGMHPKALQAMVQLEARRIIYVSCNPASLGRDGKEIAAAGYRLESVEPVDMFPHT 464

Query: 354 RHMECGVLLVR 364
            H+E     VR
Sbjct: 465 AHIESVACFVR 475


>gi|299783515|gb|ADJ41513.1| TrmA family tRNA (Uracil-5-)-methyltransferase [Lactobacillus
           fermentum CECT 5716]
          Length = 469

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 22/165 (13%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +++ YCG G  SL +A+H   V  VEI   ++  A+ N A N + N   V   
Sbjct: 305 GLDGSKTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV--- 361

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321
                   + E +F + +       +   + VDPPR GLD    +AT  M  A   ++Y+
Sbjct: 362 ------VGKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLDAQLIEATGKM--APQKVIYV 410

Query: 322 SCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP +L RDL   +    H  + +   DQFP T H+E   +L R
Sbjct: 411 SCNPATLVRDLQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLER 455


>gi|254881958|ref|ZP_05254668.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|319641039|ref|ZP_07995743.1| RNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|254834751|gb|EET15060.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|317387283|gb|EFV68158.1| RNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 473

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 24/209 (11%)

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218
           E +   G   I+ ++E         SF Q N+G   + L  V     G+ G  L  +LY 
Sbjct: 276 EVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSG-QAYNLYKVARNFAGLTGKELVYDLYT 334

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +  ++R   +V+ +E    ++E A+ N A N ++N        K+        +E
Sbjct: 335 GTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILT-----QE 389

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336
           F     I+ H  R   I  DPPR+G+ DD    ++ A P  I+Y+SCNP +  RDLS+L 
Sbjct: 390 F-----INQHG-RPDVIITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSLLD 443

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  +   D FP+T H+E  VLL ++
Sbjct: 444 AKYKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|224543151|ref|ZP_03683690.1| hypothetical protein CATMIT_02351 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523938|gb|EEF93043.1| hypothetical protein CATMIT_02351 [Catenibacterium mitsuokai DSM
           15897]
          Length = 479

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 15/161 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L+ +++  +V+ VE+ K +V+ A+ N   N V N+K ++  + EF   
Sbjct: 231 IMDTYCGIGTIGLIASKNAKQVIGVELNKDAVKDAKLNKTFNKVENIKFIQGDATEFMVE 290

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +++      D+D+       I +DPPRSG  +  +   V   P  I+Y+SC+P +  R
Sbjct: 291 AAKQKV-----DVDV-------IIMDPPRSGSTETFIKAAVSLKPKEIVYVSCDPHTQVR 338

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           DL +     +  + +  +D FP+T H+E  VLL  K    H
Sbjct: 339 DLKLFRKLGYDFKDVYPYDMFPFTSHVETVVLLSHKKPDSH 379


>gi|20808214|ref|NP_623385.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479579|ref|ZP_05092891.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum
           DSM 12653]
 gi|50401615|sp|Q8R933|Y1797_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1797
 gi|20516809|gb|AAM24989.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034482|gb|EEB75244.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum
           DSM 12653]
          Length = 450

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 31/214 (14%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212
           K ++   RDY+ E L      L ++    SF Q N+    +  E + +  +   GD    
Sbjct: 257 KLEVLYGRDYLIEELL----GLKFKISAFSFFQTNS----YGAERIYSTVREFAGDVSNK 308

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LYCG G   +V+A    +V+ +E+ + +V +A+ N A N + N   +         
Sbjct: 309 TIFDLYCGTGTIGIVMAPLARKVIGIELVEEAVFSAKENAALNGLENAVFIA------GD 362

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLC 329
             ++ RE     DI         + VDPPRSG++  A   +V   P  I+Y+SCNP+S  
Sbjct: 363 VSKKLREIKEKPDI---------VVVDPPRSGVNPKALEDIVNFEPEKIIYVSCNPESFA 413

Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL + +   + ++++   D FP+T H+E   LL
Sbjct: 414 RDLRLFVDKGYAVKKVKAIDMFPHTYHVELVGLL 447


>gi|311693681|gb|ADP96554.1| 23S rRNA 5-methyluridine methyltransferase [marine bacterium HP15]
          Length = 436

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 93/190 (48%), Gaps = 26/190 (13%)

Query: 187 FTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           FTQ NAGIN  M+    EW L    G +  +L+L+CG GNF+L LA    +V+ VE  + 
Sbjct: 265 FTQVNAGINRAMVHRAVEW-LDVQPGER--VLDLFCGLGNFTLPLATRGGQVVGVEGDET 321

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFT-QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            V   R N   N ++NV         +FT Q+  +E               F  I +DPP
Sbjct: 322 MVVRGRENAELNGLDNVAFHGADLHGDFTGQSWAKE--------------GFDKILIDPP 367

Query: 301 RSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
           RSG ++    +       I+Y+SCNP +L RD  ++    + + R  + D FP+T H+E 
Sbjct: 368 RSGAEEICKYLTAFGAQKIVYVSCNPATLARDAGVMVRNGYRLVRAGVMDMFPHTTHVES 427

Query: 359 GVLLVRKPSG 368
            + L  K SG
Sbjct: 428 -IALFEKDSG 436


>gi|301060814|ref|ZP_07201628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium
           NaphS2]
 gi|300445063|gb|EFK09014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium
           NaphS2]
          Length = 466

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 122/265 (46%), Gaps = 29/265 (10%)

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + ++ +TS++D + +    H L +   R+   R++  ++    +   I    K K+    
Sbjct: 225 WMVNLVTSKNDASTL----HPLAEHLCRKFP-RIKTVVNNINGRKASIAVGEKEKVLTGD 279

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGN 222
            ++++++        +R   NSF Q N    + + E VL  A  KG +  +L+LY G G 
Sbjct: 280 GFINDKIG----PFSFRVSANSFFQTNTSAALKLYEQVLRYADPKGKE-QVLDLYSGTGT 334

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             + L+     V  +EI++ +   A+ N   N+V+N + V    +E              
Sbjct: 335 IPIFLSDRVRSVTGIEISESATADAKRNALVNNVHNCRFVCGDIRE-------------- 380

Query: 283 KDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340
             +    ++   + +DPPR+G+  D     +   P  I+Y+SCNP +L RDL I++  + 
Sbjct: 381 -KLGTVGFKPDIMIIDPPRAGMHKDVLAETMGINPRRIVYVSCNPATLARDLEIMAEAYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +  +   D FP+T H+E    L R+
Sbjct: 440 LNEIQPVDMFPHTYHIESVAKLSRR 464


>gi|323340242|ref|ZP_08080506.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323092433|gb|EFZ35041.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 464

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 19/211 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
            ++T     RDY+ E+L      L  R    +F Q N      M + V  A    QG++L
Sbjct: 265 GDETTRIFGRDYIIEKLGDVSFKLSAR----AFFQMNPVQTKKMYDEVKQALNLKQGEIL 320

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            + YCG G   L   +    VL +++   ++  A+ N A + + NV      +K+     
Sbjct: 321 VDAYCGVGTIGLYCGKEAGLVLGMDVVSEAIADAKENAAMSGIKNVVYEEGDAKKIFAKW 380

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
            +  +            +F  + VDPPR+GLDD T+ ++        +Y+SCNP +L RD
Sbjct: 381 EKAGQ------------KFDALVVDPPRTGLDDETIKVILRNKPKKFVYVSCNPSTLARD 428

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           L  L + + +  +   D FP T   E  V L
Sbjct: 429 LVSLVSKYDVSYIQPIDMFPQTARTEAVVKL 459


>gi|170077182|ref|YP_001733820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
           7002]
 gi|169884851|gb|ACA98564.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
           7002]
          Length = 452

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 32/217 (14%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK---GIQG 211
            + TK    R Y++E    AG TL  R    +F Q    +N    E +L A        G
Sbjct: 254 GDTTKAIAGRPYLEE--IFAGLTLKLR--PETFFQ----VNTSAAEALLTAITQQLTFTG 305

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  L++ YCG G F+L LA+   + + +E+   S++ A  N   N ++NV+    + +  
Sbjct: 306 EEILVDAYCGVGTFTLPLAKKVQQAIGIEVQASSIQQAWENAHHNDIHNVEFYAGTVESI 365

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDS 327
                       L  +D+ +     + +DPPR G D   +  ++ + P  I+YISCNP +
Sbjct: 366 ------------LPSLDVTA---DIVLLDPPRKGCDRQVLDALLHSKPKQIVYISCNPAT 410

Query: 328 LCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362
           L RDL  L  T  + I+ +   D FP T H+EC VLL
Sbjct: 411 LARDLKHLCATQQYQIQWVQPADFFPQTPHVECAVLL 447


>gi|260771269|ref|ZP_05880196.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio furnissii CIP
           102972]
 gi|260613866|gb|EEX39058.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio furnissii CIP
           102972]
          Length = 440

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 43/242 (17%)

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLT-VAGRTLIYRQI-------ENSFTQPNAGIN 195
           A K Q  L   A +  + L R    E L  V G   +Y ++        ++F Q N  +N
Sbjct: 219 AAKDQSALEAFAAQHDLTLYRMPSSESLEHVCGEGAVYGEVGVTIPFLPSNFIQVNQPVN 278

Query: 196 VHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             M    L W LA T   +  +L+L+CG GNFSL LA+   +V+ VE     VE A+ N 
Sbjct: 279 QAMVAQALAW-LAVTP--EERVLDLFCGLGNFSLPLAKLAKQVVGVEGIDDMVERAKANA 335

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDAT 308
             N ++NV         F QA       N  +D+   ++   +F  + +DP R+G     
Sbjct: 336 TRNDLHNV--------SFYQA-------NLEQDMTGETWAAEKFDKVLLDPARAG----A 376

Query: 309 VGMVQ-----AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362
            G+V          ++Y+SCNP +L RD  S+LS    + +L + D FP+T H+E   L 
Sbjct: 377 AGIVDQLAALGAKRVVYVSCNPATLARDSQSLLSQGFQLVKLGMLDMFPHTSHLESMALF 436

Query: 363 VR 364
           V+
Sbjct: 437 VK 438


>gi|294775567|ref|ZP_06741077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
           PC510]
 gi|294450617|gb|EFG19107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
           PC510]
          Length = 473

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 24/209 (11%)

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218
           E +   G   I+ ++E         SF Q N+G   + L  V     G+ G  L  +LY 
Sbjct: 276 EVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSG-QAYNLYKVARNFAGLTGKELVYDLYT 334

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +  ++R   +V+ +E    ++E A+ N A N ++N        K+        +E
Sbjct: 335 GTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILT-----QE 389

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336
           F     I+ H  R   I  DPPR+G+ DD    ++ A P  I+Y+SCNP +  RDLS+L 
Sbjct: 390 F-----INQHG-RPDVIITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSLLD 443

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  +   D FP+T H+E  VLL ++
Sbjct: 444 AKYKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|194873870|ref|XP_001973294.1| GG13433 [Drosophila erecta]
 gi|190655077|gb|EDV52320.1| GG13433 [Drosophila erecta]
          Length = 615

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN + N K    ++ +F ++
Sbjct: 419 MLDICCGTGTITLAFAKHCRKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNANDFIKS 478

Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327
           M RE  +++   K +D+         VDPPR+GL   ++  ++   A   ++Y+SCNP S
Sbjct: 479 MVREALYDQEPGKPVDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 532

Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366
             R+   L+   + +              D FP+T H E  +L  R+P
Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580


>gi|261404859|ref|YP_003241100.1| TrmA family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261281322|gb|ACX63293.1| RNA methyltransferase, TrmA family [Paenibacillus sp. Y412MC10]
          Length = 523

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 19/164 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ YCG G  SL LA+H  +V  VEI K ++E AR N   N + +V+    +
Sbjct: 372 GLTGEETVIDAYCGIGTISLFLAQHAKKVYGVEIVKEAIEDARANAELNGMKHVEFEVGA 431

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323
           S++            R K+  I +     I VDPPR G D   +  +++  P  ++Y+SC
Sbjct: 432 SEDV---------IPRWKEQGIEA---DVIVVDPPRKGCDPRLLETILEMKPERVVYVSC 479

Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +L RDL IL      T+E +   D FP+T H+E   +LV K
Sbjct: 480 NPSTLARDLRILEDGGYRTVE-VTPVDMFPHTVHVESVAVLVWK 522


>gi|16761736|ref|NP_457353.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143220|ref|NP_806562.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213163047|ref|ZP_03348757.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213424910|ref|ZP_03357660.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581488|ref|ZP_03363314.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213648277|ref|ZP_03378330.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289829826|ref|ZP_06547341.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|20140067|sp|Q8Z446|RUMA_SALTI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|25322739|pir||AH0860 probable RNA methyltransferase (EC 2.1.1.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504037|emb|CAD06071.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138853|gb|AAO70422.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 431

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE  + 
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVQA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|189501463|ref|YP_001960933.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides
           BS1]
 gi|189496904|gb|ACE05452.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides
           BS1]
          Length = 480

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 34/263 (12%)

Query: 111 TSQSDQAIVTLI---YHRLLDDAWRECAIRLRDALHARKYQI--------QLIGRANKTK 159
           + + D+ +V L+   Y   L  A+R+   RL +A+  +K  I          +    K  
Sbjct: 227 SEERDELMVNLVTSSYDSALMKAYRD---RLLEAMPGQKMTIVNNVTTRKNTVAVGEKEF 283

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217
           +      + ERL      L +R   NSF Q N      + + ++    G++ D  + +LY
Sbjct: 284 VVHGEGVIQERLG----DLQFRISANSFFQTNTKQAEALYDGIMQMA-GLRKDDTVYDLY 338

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L LA    + + +EI + S+  A  N + N + N    R+  K+F   +    
Sbjct: 339 CGTGTITLYLAERCRQAVGLEIVESSLSDAAENASRNGIANASFYRVDLKDFHTLLGTLE 398

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD-LSI 334
           EF             + I  DPPR+G+   A   MV+  P  I+Y+SCNP +L RD   I
Sbjct: 399 EFGFP----------RVIVTDPPRAGMHPKALKTMVRLQPETIVYVSCNPANLARDGKEI 448

Query: 335 LSTTHTIERLALFDQFPYTRHME 357
            +  + +E +   D FP+T H+E
Sbjct: 449 CAANYRLEEVQPVDMFPHTSHIE 471


>gi|297580019|ref|ZP_06941946.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535665|gb|EFH74499.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 377

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMEIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ LS+   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELSSYQMI-RVEWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|269302671|gb|ACZ32771.1| RNA methyltransferase family protein [Chlamydophila pneumoniae
           LPCoLN]
          Length = 401

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/158 (32%), Positives = 83/158 (52%), Gaps = 19/158 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   ++L+ +   V+ VEI   +V +A+ NI AN+  +   V +   E  +A
Sbjct: 255 LLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEVYL---EDAKA 311

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL-- 328
             +  E  +  D+         I +DPPR G+    +  +     P I+YISCNP +   
Sbjct: 312 FCKRNENCKAPDV---------IVIDPPRCGMQSKVLKYILRIESPKIVYISCNPKTQFQ 362

Query: 329 -CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            C DL  +S  + I+++   DQFPY+ H+E  +LL R+
Sbjct: 363 ECADL--ISGGYRIKKMQPIDQFPYSTHLENIILLERE 398


>gi|66046925|ref|YP_236766.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. syringae B728a]
 gi|75501105|sp|Q4ZQ44|RUMA_PSEU2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|63257632|gb|AAY38728.1| tRNA (uracil-5-)-methyltransferase/TrmA [Pseudomonas syringae pv.
           syringae B728a]
          Length = 451

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V+AVE     
Sbjct: 279 GDFIQVNASVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLARDVVAVEGVATM 338

Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           VE A  N  +N ++NV+  +   S+  TQA             D  +  F  + +DPPR 
Sbjct: 339 VERAAVNAMSNDLHNVRFFQADLSQPLTQA-------------DWAAEGFSAVLLDPPRD 385

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGV 360
           G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP T H+E   
Sbjct: 386 GAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEAMA 445

Query: 361 LL 362
           L 
Sbjct: 446 LF 447


>gi|308048558|ref|YP_003912124.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799]
 gi|307630748|gb|ADN75050.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799]
          Length = 447

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 143/336 (42%), Gaps = 57/336 (16%)

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMR-IDYFM----PGSLLINALMIEMMATIRL 96
           HYR RA     +D  +L  + F Q+   R+  ID+      P S LI  L  +++A ++L
Sbjct: 135 HYRRRARLGCRYDAGELV-LGFRQEGSNRLTAIDHCPVLAEPLSELITPLQ-QLLAPLKL 192

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
                  +  +D + +     +V  +   L ++         R+AL A        G++ 
Sbjct: 193 A----RHVGHLDLMLASEGPVVVVRLLRPLREEE--------REALAA-------FGQSR 233

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIEN---------SFTQPNAGINVHML----EWVL 203
             ++ +  D + +    A   L Y   E           F Q N  +N  M+    EW L
Sbjct: 234 GVQMLIQGDALTDLSGQAVAPLHYDIGEGRPQPAFLPGDFFQVNGVVNQAMISQAIEW-L 292

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
               G +G  L+L+CG GNF+L LA     ++ VE     VE AR   A   +  ++   
Sbjct: 293 QPQPGEKG--LDLFCGGGNFTLALAGQSAEIIGVEGVPAMVERARARAAELGLEQLRF-- 348

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYIS 322
               E+        +   LKD+D        + +DP R+G       + +  P  ILY++
Sbjct: 349 ----EYADLNGEAPKAQWLKDVDW-------VLLDPARAGAPGVMEWLAKLRPSRILYVA 397

Query: 323 CNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357
           CNP SL RD  +L+   + + RL L D FP+T H+E
Sbjct: 398 CNPASLGRDGKVLAQQGYRLSRLGLVDMFPHTHHLE 433


>gi|255311574|ref|ZP_05354144.1| rRNA methyltransferase [Chlamydia trachomatis 6276]
 gi|255317875|ref|ZP_05359121.1| rRNA methyltransferase [Chlamydia trachomatis 6276s]
          Length = 396

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 43/255 (16%)

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
             LLD      +I   + L AR           +T       ++ ++L++ GR+ ++   
Sbjct: 169 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 223

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232
             SF QP +          L A K IQ             LL+LYCG G  S++LA +  
Sbjct: 224 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGIISILLAPYVK 273

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +++ VE+   +V +A+ NI  N V ++++    +K+F +  R E     L   DI     
Sbjct: 274 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 321

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++ S+L    + + R+   DQ
Sbjct: 322 --VVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRRMQPIDQ 379

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E  VLL R
Sbjct: 380 FPHTNHLENIVLLER 394


>gi|90412092|ref|ZP_01220099.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium profundum
           3TCK]
 gi|90327070|gb|EAS43449.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium profundum
           3TCK]
          Length = 454

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 15/179 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+E           D +L+L+CG GNFSL LA+H   V+ VE     V 
Sbjct: 273 FIQVNRDVNKKMVEQATDWLDLQPNDRVLDLFCGLGNFSLPLAKHAKAVVGVEGIDEMVH 332

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   N  +N    + +  E    +   RE             F  I +DP R+G  
Sbjct: 333 RASENAMCNKQSNAAFYQANLDEDVTKLAWARE------------PFNKILLDPARAGAA 380

Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
                +V+  P  ++Y+SCNP +L RD  + L   + +ERL + D FP T H+E   L 
Sbjct: 381 GVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKGYQLERLGMLDMFPQTGHLESMALF 439


>gi|256846121|ref|ZP_05551579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_36A2]
 gi|256719680|gb|EEU33235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_36A2]
          Length = 462

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   +++A+   +V A+EI K + E        N + N++ +  +       
Sbjct: 320 IVDAYSGTGTIGMIMAKKTKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAV------ 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD 331
              E+E  +L +   ++ +  TI  DPPR GL+ + +  V      ++YISCNP +  RD
Sbjct: 374 ---EKEIIKLIN---NNQKIDTIIFDPPRKGLEASIIDTVAELNLKVVYISCNPSTFARD 427

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           + + S   + +++L   D FP T H+EC  L+V++
Sbjct: 428 VKLFSERGYVLKKLQAVDMFPQTSHIECVGLIVKE 462


>gi|239625789|ref|ZP_04668820.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239520019|gb|EEQ59885.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 462

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 118/265 (44%), Gaps = 34/265 (12%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           Q +YL  + + A+++    RLL         R    LH     +  + +++ T +   +D
Sbjct: 220 QREYLGGRDEAAVLSGWKERLL---ALPVDGRFAGILHTENDSLADVVQSDATHVLYGQD 276

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGN 220
           +  E L      L +R    SF Q N+       E +    +G  G+     + +LY G 
Sbjct: 277 FFYEELL----GLRFRISPFSFFQTNS----MGAEVLYDTARGFVGETKDKVVFDLYSGT 328

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  + +LA    +V+ VEI + +VEAA+ N   N ++N + V                 +
Sbjct: 329 GTIAQILAPVAKKVVGVEIVEEAVEAAKVNAGLNGLDNCEFVAG---------------D 373

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
            LK ID    +   I VDPPR G+    +G +  +    I+YISC P SL RDL +L   
Sbjct: 374 VLKVIDDLEDKPDLIVVDPPRDGIHPKALGKIIEFGVDRIVYISCKPTSLVRDLVVLQER 433

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            + +E++   D FP T ++E   L+
Sbjct: 434 GYRVEKVCAMDMFPGTGNVEVVTLM 458


>gi|294618092|ref|ZP_06697689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1679]
 gi|291595664|gb|EFF26960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1679]
          Length = 457

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
            +K K+   RDY++++L   G+T  YR    SF Q N     ++ +  +   +  + D+ 
Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 313

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ Y G G   L LA   D+V  +E+   ++E A++N   N + N   V     +  + M
Sbjct: 314 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIEN---VHYEVGKAEKVM 370

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
           ++ +E            +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD
Sbjct: 371 KKWQE---------KGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             +L+   + ++++   D FP T H+E     V+
Sbjct: 422 AKLLTEAGYVVKKVQPVDLFPQTHHIELVASFVK 455


>gi|240145247|ref|ZP_04743848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
 gi|257202710|gb|EEV00995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
          Length = 621

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 20/229 (8%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
             K  +   + Y+++  T+ G T  +R    SF Q N  +   +L        G+ G   
Sbjct: 297 GEKETVIYGKGYIED--TLCGCT--FRISPKSFYQVNP-VQTEILYTKAIEYAGLTGKER 351

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L+ A     V++VE+ + +V  A  N   N + NV+     + +F   
Sbjct: 352 IVDAYCGIGTIGLIAASKAKEVISVELNRDAVRDAVTNAKRNDIKNVQFYNADAGQFMVE 411

Query: 273 M---RREREFNRLKDIDIHSYR------FKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
           M   R +++ N++ D      +         +F+DPPR+G D+A +  V   A   ++YI
Sbjct: 412 MAEYRADQKKNQVPDATKSGKKATPDGNVDVVFMDPPRAGSDEAFLSSVIRLAPKRVVYI 471

Query: 322 SCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKPSG 368
           SCN ++L RDL  L+   +  +     D FP+T+H+E  VLL  +KP G
Sbjct: 472 SCNLETLARDLKYLTKHGYQAKECQPVDLFPWTKHVETVVLLSHKKPDG 520


>gi|293569131|ref|ZP_06680438.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071]
 gi|291588178|gb|EFF20019.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071]
          Length = 245

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
            +K K+   RDY++++L   G+T  YR    SF Q N     ++ +  +   +  + D+ 
Sbjct: 46  GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 101

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ Y G G   L LA   D+V  +E+   ++E A++N   N + N   V     +  + M
Sbjct: 102 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIEN---VHYEVGKAEKVM 158

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
           ++ +E            +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD
Sbjct: 159 KKWQE---------KGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 209

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             +L+   + ++++   D FP T H+E     V+
Sbjct: 210 AKLLAEAGYVVKKVQPVDLFPQTHHIELVASFVK 243


>gi|291527500|emb|CBK93086.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale M104/1]
          Length = 493

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 174/407 (42%), Gaps = 55/407 (13%)

Query: 10  YEQQLAEKVDRLRQMML---AFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGD-DLY 59
           YE+QL  K +++R  ++    F    L       +    P  YR +A+F + +D D ++ 
Sbjct: 87  YEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGADNPYRYRNKAQFPVGYDRDGNIV 146

Query: 60  HIMFDQQTKERMRID---YFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQID 108
              +  ++   + ++     +P +  I  ++ E M    + P        L+R  L +  
Sbjct: 147 TGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLVRHVLIRYG 206

Query: 109 YLTSQSDQAIV----TLIYHRLLDDAWRECAIRLR--DALHARKYQIQ------LIGRAN 156
           + + Q    +V    +L   R   +A      RL   D + +  Y I       ++G+  
Sbjct: 207 FTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMTSISYNINKENTNVILGK-- 264

Query: 157 KTKICLDRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
           KT     R Y+++ +        T  G  + Y+    SF Q N      +    LA   G
Sbjct: 265 KTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTALAFA-G 323

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + G+  + +LYCG G  SL L++   +V  VEI   ++E A+ N   N + N +     +
Sbjct: 324 LTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNNAKLNGITNAQFFVGKA 383

Query: 267 KE----FTQAMRREREFNRLKDIDIHS--YRFKTIFVDPPRSGLDDATVG-MVQAYPH-I 318
           +E    F +  +++           H+   R   I VDPPR G D+  +  M+   P  I
Sbjct: 384 EEVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGCDEKCLDTMLAMSPERI 443

Query: 319 LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +Y+SC+  +L RDL IL    + + +   FDQF +T H+E   LL R
Sbjct: 444 VYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490


>gi|229056263|ref|ZP_04195684.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
 gi|228721068|gb|EEL72606.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
          Length = 459

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 166/381 (43%), Gaps = 42/381 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMNDSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + + K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKDQFIAEIQKQMPSVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           + +I   + +        +F Q N    V + +    A   I  + +++ YCG G   L 
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALIGNEKIVDAYCGVGTIGLW 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +++   ++E A+ N   +   N K     ++++     +E          
Sbjct: 331 LANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPKWVKE---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344
              +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL RD+  L  ++ +E +
Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVETLMESYEVEYV 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP+T H+E  V LVRK
Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459


>gi|138893974|ref|YP_001124427.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250476|ref|ZP_03149167.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
 gi|134265487|gb|ABO65682.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209966|gb|EDY04734.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
          Length = 460

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 73/149 (48%), Gaps = 17/149 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+    V  VEI   ++E A+ N A N + NV     ++++    
Sbjct: 314 VIDAYCGIGTISLFLAKKAKHVYGVEIVPEAIEDAKRNAALNGITNVTFAVGAAEDVIPR 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
              E              R   + VDPPR G D A +  + A   P ++Y+SCNP +L R
Sbjct: 374 WYEE------------GIRADCLVVDPPRKGCDAALLETIMAMKPPRVVYVSCNPATLAR 421

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHME 357
           DL IL      TIE +   D FP+T H+E
Sbjct: 422 DLRILEDGGYETIE-VQPVDMFPHTAHVE 449


>gi|195479026|ref|XP_002086546.1| GE22791 [Drosophila yakuba]
 gi|194186336|gb|EDW99947.1| GE22791 [Drosophila yakuba]
          Length = 615

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN + N K    ++ +F ++
Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478

Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327
           M RE  +++   K +D+         VDPPR+GL   ++  ++   A   ++Y+SCNP S
Sbjct: 479 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAVNRLVYVSCNPHS 532

Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366
             R+   L+   + +              D FP+T H E  +L  R+P
Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580


>gi|161501989|ref|YP_001569101.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863336|gb|ABX19959.1| hypothetical protein SARI_00005 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 431

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATSAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  ++Y+SCNP +L RD  ++++  +   RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRVVYVSCNPATLARDSEALVNAGYEATRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL VR
Sbjct: 424 SMVLFVR 430


>gi|81429088|ref|YP_396088.1| TrmA family RNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610730|emb|CAI55781.1| Putative RNA methyltransferase, TrmA family [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 463

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 158/385 (41%), Gaps = 55/385 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDL---- 58
           Y  QLA K D + Q +  F+      ++         P HYR +A+F +   GD L    
Sbjct: 96  YPGQLAFKKDMMIQALEKFKPHGYNGYQVTETVGMENPWHYRNKAQFQVRQLGDHLGAGL 155

Query: 59  ----YHIMFD-----QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
                H + D      QT   MRI   +    L+  L I +    +   +L+  + +  +
Sbjct: 156 YAPSSHTLIDLPEFATQTDLTMRIIRTV--LKLVEDLGIPVFDEEKNAGILKTIVVRESF 213

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-QLIGRANKTKICLDRDYVD 168
            T ++    +T       +         L  A+ A   ++  ++   NK K  L   + D
Sbjct: 214 STGEAQLTFIT-------NSPKLPKKYALITAIQAELPEVVSIMQNVNKGKNVLV--WGD 264

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
           + + +AG+  I   +          +F Q N      M   V  A      D L++ YCG
Sbjct: 265 QTMHLAGQETIMENLNGVQFELTARAFFQLNPVQTAKMYNLVKEALDLTPEDRLVDAYCG 324

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L LA     V  ++    S+EAA++N   N ++NV     ++++           
Sbjct: 325 VGTIGLSLANQVAEVRGMDTIADSIEAAKHNAEINGIDNVDYAVGAAEDL---------- 374

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST 337
             L +   + +    + VDPPR+GLD   +  ++ + P   +Y+SCNP +L RDL  L  
Sbjct: 375 --LPEWLDNGFVPTALVVDPPRTGLDPKLIDAILDSRPLKFVYVSCNPSTLARDLKTLVH 432

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
           T+ +E++   D FP T  +E  V +
Sbjct: 433 TYQVEKIQPLDMFPQTARVEAIVTM 457


>gi|291166646|gb|EFE28692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Filifactor alocis ATCC
           35896]
          Length = 543

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++LYCG G  SL L+R+  +V  VEI + ++  A+ N + N ++NV+ +   S++    
Sbjct: 311 VIDLYCGIGTISLFLSRNAKKVYGVEIVEDAILDAKKNASHNQIDNVEFICGKSEDVLPQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330
           + ++       DI         + +DPPR G D+  + ++     P I+YISCN  +L R
Sbjct: 371 LYKK---GICADI---------VMLDPPRKGCDETLLHVISEMNVPRIVYISCNSATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +L    +T + +   D F +T H+EC VLL +
Sbjct: 419 DMKLLHELGYTADTVQPVDMFCHTMHVECVVLLSK 453


>gi|218886478|ref|YP_002435799.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757432|gb|ACL08331.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 479

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 14/163 (8%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A  G    + +LY G G  +L LAR    V   EI   +V  AR N A N++ N   V  
Sbjct: 325 AAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARANAARNNILNCSFV-- 382

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYIS 322
            S +   ++RRER    +          + + VDPPR+GL +  V  V A+    I+Y+S
Sbjct: 383 -SGDVRASLRRERPGEGVSP--------RIVVVDPPRAGLHEDVVEAVSAHQPERIVYVS 433

Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           CNP ++ RD ++ +   + ++     D FP++ H+EC  LL R
Sbjct: 434 CNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476


>gi|15838949|ref|NP_299637.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa
           9a5c]
 gi|20140309|sp|Q9PAY7|RUMA_XYLFA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|9107532|gb|AAF85157.1|AE004045_15 RNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 443

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
            ++R ++  F Q N G+N  M+   L       G+ +L+L+CG GNF+L LAR  D V+ 
Sbjct: 266 FVFRPLD--FIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVDEVVG 323

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     VE AR N   N + N +        F   + R++     +D       F  + 
Sbjct: 324 VEGDIGLVERARENARRNGLGNAEF-------FVADLTRDQ-----RDAPWMRQGFDKLL 371

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L       +  +   D FP+T
Sbjct: 372 LDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHT 431

Query: 354 RHME 357
            H+E
Sbjct: 432 AHVE 435


>gi|260495077|ref|ZP_05815206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_33]
 gi|260197520|gb|EEW95038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_33]
          Length = 457

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 170/380 (44%), Gaps = 45/380 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH-YRMR--AEFHIWHDGDDLYHIMFDQ 65
           +Y++ + E+V R    +   QV   ++  SE I+ YR +    F I+++   +    F +
Sbjct: 99  KYKKLMVEEVMRKIAGLSDIQVA--EVLASEDIYNYRNKIIEPFSIYNN--KIITGFFKR 154

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDYLTSQSDQAI 118
           ++ E   +D  +  S L N ++ E+         ++  E   +  L  I   T+ +++A+
Sbjct: 155 KSHEVFEVDENILNSKLGNRIIKELKEILNRNKISVYNEITHKGLLRNIMIRTNSNNEAM 214

Query: 119 VTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           V LI +   + +  ++   +LR+ +   K  I +   + KT   +     ++ + + G  
Sbjct: 215 VVLIINSNKITENIKKLLFKLRENISEIK-SIYISLNSKKTNTVIG----EKNILIYGEK 269

Query: 178 LIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            I   I          SF Q N      + +  ++    I    +++ Y G G   +++A
Sbjct: 270 SIKENINGIEFHISPTSFFQINVKQAKRLYDIAISFFDDIDNKYIVDAYSGTGTIGMIMA 329

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V A+EI K + E        N + N+K +  +          E+E  +L +   +
Sbjct: 330 KKAKKVYAIEIVKSASEDGEKTAKENGIENIKFINGAV---------EKELVKLIN---N 377

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT-HTIERLA 345
           + +  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + +++L 
Sbjct: 378 NQKIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVLKKLQ 437

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC V L+ K
Sbjct: 438 AVDMFPQTSHIEC-VGLIEK 456


>gi|297583072|ref|YP_003698852.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297141529|gb|ADH98286.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
           MLS10]
          Length = 441

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+    V  VE   P+++ A+ N  ANH++NV      ++     
Sbjct: 297 VIDAYCGIGTISLFLAQKARHVYGVESVAPAIDDAKRNAKANHIDNVTFAVGEAETLMPW 356

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                 +++  D D+       I VDPPR G + A +  M    P  I+Y+SCNP +L R
Sbjct: 357 W-----YSQGLDPDV-------IVVDPPRKGCETAMLDAMAAMKPERIVYVSCNPATLAR 404

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  LS   +T++ +   D FP T H+E   ++ R+
Sbjct: 405 DMKYLSEKGYTVKEVQPVDMFPQTTHVEAVTVMYRE 440


>gi|148381310|ref|YP_001255851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 3502]
 gi|153931489|ref|YP_001385686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 19397]
 gi|153937212|ref|YP_001389092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. Hall]
 gi|148290794|emb|CAL84928.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC
           3502]
 gi|152927533|gb|ABS33033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933126|gb|ABS38625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. Hall]
          Length = 461

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E    
Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV--- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    + D+     +   + VDPPR G +   +  + A     I+Y+SC+P +L R
Sbjct: 373 ---------IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLAR 423

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL IL+   +    +   D FP T H+E  VLL RK
Sbjct: 424 DLGILNGLGYETREVQPVDMFPQTSHVETCVLLQRK 459


>gi|261418678|ref|YP_003252360.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|319765493|ref|YP_004130994.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
 gi|261375135|gb|ACX77878.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|317110359|gb|ADU92851.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
          Length = 457

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 17/150 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LAR    V  VEI   ++E A+ N   N + NV     ++++    
Sbjct: 314 VMDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAELNGIRNVTFEVGAAEDVIPR 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E              R   + VDPPR G D + +  + A   P ++Y+SCNP +L R
Sbjct: 374 WYQE------------GIRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLAR 421

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMEC 358
           DL IL      TIE +   D FP+T H+EC
Sbjct: 422 DLRILEDGGYETIE-VQPVDMFPHTAHVEC 450


>gi|22536596|ref|NP_687447.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|77411313|ref|ZP_00787662.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           CJB111]
 gi|50401577|sp|Q8E1E4|Y413_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0413
 gi|22533432|gb|AAM99319.1|AE014210_9 RNA methyltransferase, TrmA family [Streptococcus agalactiae
           2603V/R]
 gi|77162649|gb|EAO73611.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           CJB111]
          Length = 451

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 160/383 (41%), Gaps = 46/383 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           QY++QL  K D +RQ ++ F+    +       I  SEP HYR + +F +   G ++   
Sbjct: 88  QYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSFGGNVKAG 147

Query: 62  MFDQQTKERMRI-DYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           ++ Q T   + I D  +  SL   +IN +  E++   +L      K+  +  +  +  QA
Sbjct: 148 LYAQGTHRLIDIKDCLVQDSLTQEMINRVA-ELLGKYKLPIYNERKIAGVRTVMIRRAQA 206

Query: 118 I--VTLIY---HRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRD 165
              V LI+    RL  DD   E    +R+    +   + +            T++   ++
Sbjct: 207 SGEVQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQE 263

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
            ++E +   G +L  R    +F Q N     +   E V A       DL++ YCG G   
Sbjct: 264 SINEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCGVGTIG 319

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     V  ++I   +++ A+ N       N       +++       E        
Sbjct: 320 LAFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHYEAGKAEDIIPRWYSE-------- 371

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIE 342
                +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+  + + 
Sbjct: 372 ----GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKVYHVH 427

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T   E  V L RK
Sbjct: 428 YIQSVDMFPHTARTEAVVKLQRK 450


>gi|228919350|ref|ZP_04082719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228840286|gb|EEM85558.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 459

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 42/381 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +    L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226
           + +I   + +        +F Q N    V +  E   AA       +++ YCG G   L 
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +++   ++  AR N   +   N K     ++++     +E          
Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344
              +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+ +L  ++ +E +
Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQVLMKSYEVEYV 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP+T H+E  V LVRK
Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459


>gi|46447178|ref|YP_008543.1| putative rRNA methyltransferse [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|51316628|sp|Q6MAY1|Y1544_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1544
 gi|46400819|emb|CAF24268.1| putative rRNA methyltransferse [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 442

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 20/208 (9%)

Query: 165 DYVDERLTV-----AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           D++ E+L +     A +TL +R   ++F QPN      +    L  A       + +LYC
Sbjct: 244 DHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQALKLADLSASHVVYDLYC 303

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   +  A++   V+ +E+++ SV  AR N+  N ++NV I      +  +A+ +E  
Sbjct: 304 GTGTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSNVTIKSGDVGQVLEALSQE-- 361

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-IL 335
                    +S +   + VDPPR GLD   +  +     P ++YISCNP +   +L  ++
Sbjct: 362 ---------NSLKPDVVMVDPPRIGLDAKAIKHILDLKAPKLVYISCNPKTQVMNLGPLI 412

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + ++ +   DQFP T H+E   LL 
Sbjct: 413 DGGYQLQIVQPVDQFPQTVHVENITLLT 440


>gi|313905584|ref|ZP_07838946.1| Methyltransferase type 11 [Eubacterium cellulosolvens 6]
 gi|313469531|gb|EFR64871.1| Methyltransferase type 11 [Eubacterium cellulosolvens 6]
          Length = 570

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 104/231 (45%), Gaps = 31/231 (13%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + + + T I   RDY  E L      L ++    SF Q N+       E 
Sbjct: 335 LHTVNDSLADVVQNDHTDILAGRDYFYEELL----GLKFKITPFSFFQTNS----KGAEV 386

Query: 202 VLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +    +   GD+      +LY G G  + +LA     V+ VEI + +VEAA+ N A N +
Sbjct: 387 LYRTAREFLGDIDNQTVFDLYSGTGTIAQMLAPVAKNVVGVEIVEEAVEAAKENAALNGL 446

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315
           +N + +                 + LK +D  + +  TI +DPPR G+    +  + AY 
Sbjct: 447 DNCRFI---------------AGDVLKVLDELTEKPDTIVLDPPRDGIHPKALPKIVAYG 491

Query: 316 -PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
              I+YISC P SL RDL   L   + +ER+   D FP T H+E   LL R
Sbjct: 492 VEKIIYISCKPSSLARDLPYFLRHGYRLERMCCVDMFPGTVHVEVVSLLQR 542


>gi|312129534|ref|YP_003996874.1| 23S rRNA m(5)u-1939 methyltransferase [Leadbetterella byssophila
           DSM 17132]
 gi|311906080|gb|ADQ16521.1| 23S rRNA m(5)U-1939 methyltransferase [Leadbetterella byssophila
           DSM 17132]
          Length = 467

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 14/191 (7%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLA 236
           L +R    SF Q N+     + + V    +  + DL+ +LY G G  +  LA+    V+ 
Sbjct: 287 LKFRIGVKSFYQTNSEQAYELYKKVREYAQIQENDLVYDLYTGTGTIANFLAKGAKHVVG 346

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +P+VE AR N   N + N       + +  + +  E            + R   + 
Sbjct: 347 VEYIEPAVEDARINSQINGITNTTFF---AGDMAKVLNEE--------FVAQNGRPDVVI 395

Query: 297 VDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
            DPPR+G+D +    +++  P  I+Y+SCNP +  RDL ILS  + +E +A  D FP+T 
Sbjct: 396 TDPPRAGMDKSVCEVLLKVAPRRIVYVSCNPGTQARDLEILSEKYEVEAVAPVDMFPHTF 455

Query: 355 HMECGVLLVRK 365
           H+E  V L+ K
Sbjct: 456 HVENIVSLILK 466


>gi|182412677|ref|YP_001817743.1| RNA methyltransferase [Opitutus terrae PB90-1]
 gi|177839891|gb|ACB74143.1| RNA methyltransferase, TrmA family [Opitutus terrae PB90-1]
          Length = 493

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 16/155 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G F+L  A  F+RV  VEI++ SV  AR N AAN + N   +   +      
Sbjct: 349 LVDAYCGSGLFALASASAFERVAGVEISESSVRFARENAAANGITNASFLAADAAAIFAG 408

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           +     F   + +         + +DPPR G D   +  + A+    ++Y+SC+P +  R
Sbjct: 409 L----AFPAAESV---------VVIDPPRKGCDREFLQQLFAFGPRAVVYVSCDPATQMR 455

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL   L+  + +  +  FD FP TRH+EC + L R
Sbjct: 456 DLRDFLAAGYELIAVQPFDLFPQTRHLECVITLRR 490


>gi|325913301|ref|ZP_08175669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 60-B]
 gi|325477404|gb|EGC80548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 60-B]
          Length = 448

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E    
Sbjct: 304 VIDAYSGIGTIGLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
              E              +   IFVDPPR GL D  +   V   P  I+YISCNP ++ R
Sbjct: 364 WANE------------GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIR 411

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +  +  +  + +   D FP T H+E  VL+ +
Sbjct: 412 DLQVFQAAGYDFDCIDPVDMFPQTPHVETIVLMSK 446


>gi|223985932|ref|ZP_03635968.1| hypothetical protein HOLDEFILI_03274 [Holdemania filiformis DSM
           12042]
 gi|223962119|gb|EEF66595.1| hypothetical protein HOLDEFILI_03274 [Holdemania filiformis DSM
           12042]
          Length = 458

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 168/380 (44%), Gaps = 46/380 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDLYHIMFDQQT 67
           Y  QL  K ++++Q++  +   +  +  +EP  YR +  A F +   G  +  I +++ +
Sbjct: 97  YPAQLDWKKEKVQQLLGRYGRVHDVLGMAEPWAYRNKVIATFSLSKKGKVIAGI-YEEDS 155

Query: 68  KERMRIDYFM---PGSLLINALMIEMMATIRLEP--------LLRAKLFQIDYLTSQSDQ 116
            + +         P +  I A + E+M  +R+EP        L+R  L ++ ++   S +
Sbjct: 156 HQLVAYSSCWIQDPIAEKILATVCELMTELRIEPYDEDQRTGLVRHCLIRVGHV---SRE 212

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA-G 175
            +V L+    +  A ++   RLR   H     I +   +  T + L      ER+ V  G
Sbjct: 213 VLVCLVCASPIFPARKQLIQRLRQR-HPEITTIVMNVNSRNTSVVLGSQ---ERVLVGTG 268

Query: 176 R------TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227
           +       L +     SF Q N+ +   +L         + G   +L+ YCG G+ SLV 
Sbjct: 269 KIQDELCGLKFSIAAKSFYQINS-VQTEVLYGKAMELANLTGKERVLDAYCGIGSISLVA 327

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+    V+ VE+   SV  A  N   NH+ N   V   +  F +   RE +         
Sbjct: 328 AKAAKEVVGVEVNPVSVTNAIENARMNHLRNAWFVEADAGLFMEQAAREGQA-------- 379

Query: 288 HSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERL 344
               +  +F+DPPR+G D+  +  + +  P  I+YISCNP +  RDL  L+   + +  +
Sbjct: 380 ----YDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGYQVRTI 435

Query: 345 ALFDQFPYTRHMECGVLLVR 364
              D FP T H+E  VLL R
Sbjct: 436 VPVDLFPMTSHVETIVLLQR 455


>gi|297620448|ref|YP_003708585.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
           86-1044]
 gi|297375749|gb|ADI37579.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
           86-1044]
          Length = 482

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 17/201 (8%)

Query: 171 LTVAG-RTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           LT  G   L++     +F QPN      ++ L   LA     Q  + +LYCG G   +  
Sbjct: 292 LTEGGLEPLLFHISPAAFFQPNTLQAEKLYSLALELAQISKEQ-VVYDLYCGTGTLGICA 350

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+   +V+ VE++  S   AR+N   N + N+ I+  + +   + ++ +  F    D D+
Sbjct: 351 AKRAKQVVGVELSPESAHDARHNAKENRIENLTILTGAVRRVLEEIKEKELF---PDPDV 407

Query: 288 HSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDL-SILSTTHTIERL 344
                  + VDPPR+GLD   +   +    P I+Y+SCNP +   ++   L   + ++ +
Sbjct: 408 -------VMVDPPRAGLDPHAIKHLLELGPPKIVYVSCNPATQVENVKEFLKDGYVLKAV 460

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              DQFP T H+E  VLL +K
Sbjct: 461 QPVDQFPQTVHIENIVLLAKK 481


>gi|228989612|ref|ZP_04149596.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
           12442]
 gi|228770149|gb|EEM18729.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
           12442]
          Length = 461

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +++ YCG G   L LA     V  +++   ++E A+ N   +   N K     
Sbjct: 310 GLTGKEKIVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGK 369

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYIS 322
           ++++     +E             +R   I VDPPR+G DD    T+  VQ    ++Y+S
Sbjct: 370 AEQWLPKWVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVQPK-QVVYVS 416

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CNP SL RD+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 417 CNPSSLARDVKALMKSYEVEYVQPVDMFPHTAHVENVVRLVRK 459


>gi|227498264|ref|ZP_03928414.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226903726|gb|EEH89644.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 460

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 18/165 (10%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IV 262
           AA +G + ++++LYCG G  +L LA+     L +EI  P++  AR N   NH+ N + I 
Sbjct: 307 AALEGKE-NVIDLYCGTGTITLFLAQKARHALGIEIVAPAIADARKNARDNHIKNSEFIC 365

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320
             ++KE    +R                R   + +DPPR+G +   +  + A     ++Y
Sbjct: 366 ADAAKELPLLVR-------------DGIRPDVVVLDPPRAGCERPVLDAILAVRPKRVVY 412

Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +SC P SL RD +IL    + I ++   D FP+T H+E  VL+ R
Sbjct: 413 VSCGPASLARDAAILCEGGYNIRQVQPVDMFPHTSHVETVVLMSR 457


>gi|25010521|ref|NP_734916.1| hypothetical protein gbs0448 [Streptococcus agalactiae NEM316]
 gi|50401579|sp|Q8E6W1|Y448_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0448
 gi|23094874|emb|CAD46092.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 451

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 161/383 (42%), Gaps = 46/383 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           QY++QL  K D +RQ ++ F+    +       I  SEP HYR + +F +   G ++   
Sbjct: 88  QYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSFGGNVRAG 147

Query: 62  MFDQQTKERMRI-DYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           ++ Q T   + I D  +  SL   +IN +  E++   +L      K+  +  +  +  QA
Sbjct: 148 LYAQGTHRLIDIKDCLVQDSLTQEMINRVA-ELLGKYKLPIYNERKIAGVRTVMIRRAQA 206

Query: 118 I--VTLIY---HRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRD 165
              V LI+    RL  DD   E    +R+    +   + +            T++   ++
Sbjct: 207 SGEVQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQE 263

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
            ++E +   G +L  R    +F Q N     +   E V A       DL++ YCG G   
Sbjct: 264 SINEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCGVGTIG 319

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     V  ++I   +++ A+ N       N            +A + E    R   
Sbjct: 320 LAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHY---------EAGKAEDVIPRWYS 370

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIE 342
                +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+  + + 
Sbjct: 371 ---EGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKVYHVH 427

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T   E  V L RK
Sbjct: 428 YIQSVDMFPHTARTEAVVKLQRK 450


>gi|120555154|ref|YP_959505.1| 23S rRNA 5-methyluridine methyltransferase [Marinobacter aquaeolei
           VT8]
 gi|143581341|sp|A1U2U9|RUMA_MARAV RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120325003|gb|ABM19318.1| 23S rRNA m(5)U-1939 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 449

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 25/186 (13%)

Query: 187 FTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           FTQ NAGIN +M+    EW L    G +  +L+L+CG GNF+L LAR   +V+ VE    
Sbjct: 278 FTQVNAGINRNMVHRAVEW-LDVQPGER--VLDLFCGLGNFTLPLARKGGQVVGVEGDDA 334

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFT-QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            V   R N   N ++NV+        +FT Q+  +E               F  I +DPP
Sbjct: 335 MVVRGRENARLNDLSNVEFHGADLHGDFTGQSWAKE--------------GFDKILIDPP 380

Query: 301 RSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
           RSG ++    +       I+Y+SCNP +L RD  ++    + + +  + D FP+T H+E 
Sbjct: 381 RSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYRLVQAGVMDMFPHTTHVES 440

Query: 359 GVLLVR 364
             L  R
Sbjct: 441 IALFER 446


>gi|195496369|ref|XP_002095665.1| GE22531 [Drosophila yakuba]
 gi|194181766|gb|EDW95377.1| GE22531 [Drosophila yakuba]
          Length = 615

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN + N K    ++ +F ++
Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478

Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327
           M RE  +++   K +D+         VDPPR+GL   ++  ++   A   ++Y+SCNP S
Sbjct: 479 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAVNRLVYVSCNPHS 532

Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366
             R+   L+   + +              D FP+T H E  +L  R+P
Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580


>gi|326624695|gb|EGE31040.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 437

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 268 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 324

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            VE  R N   N ++NV     +  +E T+    +  F++             + +DP R
Sbjct: 325 LVEKGRENAIRNGLHNVTFFHENLEEEVTKQPWAKNGFDK-------------VLLDPAR 371

Query: 302 SGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E  
Sbjct: 372 AGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESM 431

Query: 360 VLLVR 364
           VL  R
Sbjct: 432 VLFER 436


>gi|330966580|gb|EGH66840.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 451

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
             F Q NA +N  M+E    W+  A       +++L+CG GNF+L LA     V+AVE  
Sbjct: 279 GDFIQVNAAVNTAMIEQALHWLAPAA---DERVMDLFCGLGNFALPLASLAKEVVAVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              VE A  N  +N ++NV+  +   S+  T A             D  +  F  + +DP
Sbjct: 336 ATMVERAAVNAMSNDLHNVRFFQADLSQPLTHA-------------DWAAEGFSAVLLDP 382

Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357
           PR G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP T H+E
Sbjct: 383 PRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVE 442

Query: 358 CGVLL 362
              L 
Sbjct: 443 AMALF 447


>gi|265753522|ref|ZP_06088877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_33FAA]
 gi|263235236|gb|EEZ20760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_33FAA]
          Length = 473

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 24/207 (11%)

Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGN 220
           +   G   I+ ++E         SF Q N+G   + L  V     G+ G+ L  +LY G 
Sbjct: 278 MVFKGNNHIFEEMEGLRFKIGAKSFYQTNSG-QAYNLYKVARNFAGLTGNELVYDLYTGT 336

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +  ++R   +V+ +E    ++E A+ N A N ++N        K+        +EF 
Sbjct: 337 GTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILT-----QEF- 390

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT 338
               I  H  R   I  DPPR+G+ DD    ++ A P  I+Y+SCNP +  RDLS+L   
Sbjct: 391 ----ISQHG-RPDVIITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSLLDAK 445

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T H+E  VLL ++
Sbjct: 446 YKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|331702034|ref|YP_004398993.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129377|gb|AEB73930.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
           B-30929]
          Length = 456

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL +AR   +V  VEI   +VE A+ N   N++ NV  V  +SK  TQ 
Sbjct: 311 VIDAYCGIGTISLSMARVAKQVYGVEIVPEAVEDAKKNAKLNNLTNVHFV--ASKAETQ- 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M + +E     D+         I VDPPR GLD + +  +V+  P  ++Y+SCNP +L R
Sbjct: 368 MAKWQEDGLKPDV---------ISVDPPRKGLDASLIDSVVKMQPKRVVYVSCNPATLAR 418

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           D+ + +       + +   DQFP T H+E   +L R
Sbjct: 419 DVKLFTEQGYQVNQPIQPVDQFPQTVHVESITVLER 454


>gi|42759862|ref|NP_012982.2| Trm2p [Saccharomyces cerevisiae S288c]
 gi|110825750|sp|P33753|TRM2_YEAST RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Transfer RNA methyltransferase 2; AltName:
           Full=tRNA(M-5-U54)-methyltransferase
 gi|285813310|tpg|DAA09207.1| TPA: Trm2p [Saccharomyces cerevisiae S288c]
          Length = 639

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 21/160 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  ++  D+V+ VEI+  SV  A  N  AN V N + +   +++  ++
Sbjct: 492 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFES 551

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                       ID  S    ++ +DPPR G D+  +  + AY    I+YISCN  S  R
Sbjct: 552 ------------IDTPSEN-TSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQAR 598

Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+          + H IE +  FD FP T H+E   ++ R
Sbjct: 599 DVEYFLKETENGSAHQIESIRGFDFFPQTHHVESVCIMKR 638


>gi|114046682|ref|YP_737232.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-7]
 gi|113888124|gb|ABI42175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-7]
          Length = 463

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 22/184 (11%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q NA IN  M    L+W LA   G +  +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 292 GNFVQVNAQINKAMVAQALDW-LAPQPGER--ILDLFCGMGNFSLPLAKLGAEVIGVEGV 348

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V  AR N AAN ++N+        + +  +  E    ++            + +DP 
Sbjct: 349 PEMVSQARENAAANGLSNLTFYH---GDLSADLSCEPWMGKI----------DKLLLDPA 395

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358
           R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + +++L L D FP T H+E 
Sbjct: 396 RAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEA 455

Query: 359 GVLL 362
             L 
Sbjct: 456 MALF 459


>gi|315230888|ref|YP_004071324.1| TrmA-like RNA methyltransferase [Thermococcus barophilus MP]
 gi|315183916|gb|ADT84101.1| TrmA-like RNA methyltransferase [Thermococcus barophilus MP]
          Length = 420

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 129/278 (46%), Gaps = 40/278 (14%)

Query: 100 LRAKLFQIDYLT----SQSDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQL 151
           L+ K   + YL+      +D+ +++LI H      L +A+R+      D+L+      + 
Sbjct: 170 LKRKRGDVHYLSVREGKSTDEVMISLIAHIKPNEKLAEAFRDY-FYFADSLYWSFKADKR 228

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-Q 210
                + K+   + Y+ ER+      ++Y    NSF Q N+    + L  +L A +G  +
Sbjct: 229 DDPKGEPKLIAGKPYISERIG----DVVYLIHPNSFFQANS----YALPLLLKAAEGFTE 280

Query: 211 GD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G+ +L+LY G G F + LA+   +V  VE    +VE A  N   N V+ V   R+   E 
Sbjct: 281 GEKILDLYSGLGTFGIWLAKRGFKVEGVEANPFAVEMANKNAKLNGVDAV--FRLGKAEE 338

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSL 328
           T           + D D       T  VDPPR GL +    + ++   +I+Y+SCNP + 
Sbjct: 339 TA----------IGDYD-------TAVVDPPRKGLKETAELLAKSNVENIIYVSCNPKAF 381

Query: 329 CRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             D  + L   + IE   L D FP+T H+E  V LVRK
Sbjct: 382 KLDYENHLKKAYQIEDALLIDMFPHTPHVEAVVKLVRK 419


>gi|228995800|ref|ZP_04155460.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|229003420|ref|ZP_04161240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228757798|gb|EEM07023.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228763961|gb|EEM12848.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
          Length = 461

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++E A+ N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLC 329
             +E             +R   I VDPPR+G DD    T+  VQ    ++Y+SCNP SL 
Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVQPK-QVVYVSCNPSSLA 423

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 424 RDVKALMKSYEVEYVQPVDMFPHTAHVENVVRLVRK 459


>gi|16769886|gb|AAL29162.1| SD08036p [Drosophila melanogaster]
          Length = 615

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN + N K    ++ +F ++
Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478

Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327
           M RE  +++   K +D+         VDPPR+GL   ++  ++   A   ++Y+SCNP S
Sbjct: 479 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 532

Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366
             R+   L+   + +              D FP+T H E  +L  R+P
Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580


>gi|212693125|ref|ZP_03301253.1| hypothetical protein BACDOR_02632 [Bacteroides dorei DSM 17855]
 gi|212664230|gb|EEB24802.1| hypothetical protein BACDOR_02632 [Bacteroides dorei DSM 17855]
          Length = 473

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+G   + L  V     G+ G+ L  +LY G G  +  ++R   +V+ +E    +
Sbjct: 301 SFYQTNSG-QAYNLYKVARNFAGLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEA 359

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N A N ++N        K+        +EF     I  H  R   I  DPPR+G
Sbjct: 360 IEDAKVNSAINGIDNTLFYAGDMKDILT-----QEF-----ISQHG-RPDVIITDPPRAG 408

Query: 304 L-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           + DD    ++ A P  I+Y+SCNP +  RDLS+L   + +  +   D FP+T H+E  VL
Sbjct: 409 MHDDVINTILFAEPQRIVYVSCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVL 468

Query: 362 LVRK 365
           L ++
Sbjct: 469 LEKR 472


>gi|116334207|ref|YP_795734.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           brevis ATCC 367]
 gi|116099554|gb|ABJ64703.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           brevis ATCC 367]
          Length = 457

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 18/163 (11%)

Query: 208 GIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +++ YCG G  SL LA+H  +V  VEI   ++E A+ N   NH++NV      
Sbjct: 304 GLTGAETVIDAYCGIGTISLALAKHAKQVYGVEIVPEAIEDAKVNAQKNHLSNV------ 357

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISC 323
               T A+ +    +++ +      +   I VDPPR GL ++ +      A   ++Y+SC
Sbjct: 358 ----TFAVNKAE--DQMAEWQAAGIKPDVIVVDPPRKGLAESLIDSAAKMAPKKVVYVSC 411

Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           NP +L RD++  +    H    +   DQFP T H+E   +L R
Sbjct: 412 NPATLVRDVARFTELGYHVDGPVQPVDQFPQTPHVESVTVLKR 454


>gi|260437712|ref|ZP_05791528.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
 gi|292809735|gb|EFF68940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
          Length = 461

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 168/395 (42%), Gaps = 56/395 (14%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMML------AFQVPNLQIFRSEPIHYRMRAEFHIWHDGD- 56
           TL+   YE+QL  K   +   ++        +VP + I    P  YR +A+F +  D D 
Sbjct: 83  TLMAMSYERQLEFKRHLIENNLIRIGGLSGIEVPPV-IGMDNPYRYRNKAQFPVGTDKDG 141

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105
           ++    +  +T   +  +  + GS +   ++ E+ A + +             L+R  L 
Sbjct: 142 NIVMGFYAGRTHSIIPNEDCLIGSDINAGILAEIKAFMIMNHIKSYDENSHSGLVRHILI 201

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR- 164
           +  + T Q    +V    +   +D   +  + L  +   +   I +     KT + L + 
Sbjct: 202 RTGFTTGQIMVCVVINGSNIPKEDELVKKLLALSFSNERKIASIMVNINREKTNVILGKK 261

Query: 165 -----------DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
                      DY+ E        + YR    SF Q N  +    L  +     G+ G+ 
Sbjct: 262 CRVLYGTPYIEDYIGE--------VKYRIQPLSFYQVNP-VQTEKLYNIALDYAGLTGNE 312

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LYCG G  SL LA+   +V  VEI   ++E A  N   N ++N         EF  
Sbjct: 313 TVWDLYCGIGTISLFLAKKAKKVYGVEIVPEAIEDAVTNAKLNGIDNA--------EFYV 364

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
               E    +    ++H+     I VDPPR G D+A +G MV+  P  I+Y+SC+  +L 
Sbjct: 365 GKAEEILPEKYDKENVHA---DVIVVDPPRKGCDEALLGTMVKMAPERIVYVSCDSATLA 421

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           RDL  L    + ++++   DQF ++ H+E  VL+V
Sbjct: 422 RDLKFLVGNGYEVKKVQGVDQFCHSGHVETVVLMV 456


>gi|237798965|ref|ZP_04587426.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806201|ref|ZP_04592905.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021819|gb|EGI01876.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027314|gb|EGI07369.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 451

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
             F Q NA +N  M+E    W+  A       +++L+CG GNF+L LA     V+AVE  
Sbjct: 279 GDFIQVNAAVNTAMIEQALQWLAPAADE---RVMDLFCGLGNFALPLAGLAKEVVAVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              VE A  N  +N ++NV+  +   S+  T A             D  +  F  + +DP
Sbjct: 336 ATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA-------------DWAAEGFSAVLLDP 382

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357
           PR G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP T H+E
Sbjct: 383 PRDGAFEVVRQISKTGARRLLYVSCNPATLARDTVELIRQGYRLKRAGILDMFPQTAHVE 442

Query: 358 CGVLL 362
              L 
Sbjct: 443 AMALF 447


>gi|201065699|gb|ACH92259.1| FI05218p [Drosophila melanogaster]
          Length = 640

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN + N K    ++ +F ++
Sbjct: 444 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 503

Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327
           M RE  +++   K +D+         VDPPR+GL   ++  ++   A   ++Y+SCNP S
Sbjct: 504 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 557

Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366
             R+   L+   + +              D FP+T H E  +L  R+P
Sbjct: 558 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 605


>gi|198244789|ref|YP_002216931.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197939305|gb|ACH76638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
          Length = 431

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            VE  R N   N ++NV     +  +E T+    +  F++             + +DP R
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEEEVTKQPWAKNGFDK-------------VLLDPAR 365

Query: 302 SGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E  
Sbjct: 366 AGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESM 425

Query: 360 VLLVR 364
           VL  R
Sbjct: 426 VLFER 430


>gi|114562226|ref|YP_749739.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella
           frigidimarina NCIMB 400]
 gi|122300475|sp|Q086B4|RUMA_SHEFN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|114333519|gb|ABI70901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella
           frigidimarina NCIMB 400]
          Length = 455

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 20/183 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            +F Q N  IN  M++  +       G+ +L+L+CG GNFSL LA     V+ VE     
Sbjct: 284 GNFVQVNGAINQAMVDQAIEWLDPQSGERILDLFCGVGNFSLPLALKAAEVIGVEGVPEM 343

Query: 244 VEAARYNIAANHVNNVKI--VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           V+ A+ N   N ++NV      +S+   TQ          L  ID        + +DP R
Sbjct: 344 VQQAKQNAIDNQLDNVTFYHADLSADLSTQTW--------LGKID-------KLLLDPAR 388

Query: 302 SGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECG 359
           +G  ++   + +  P  ++Y+SCNP SL RD S+ L++ + I ++ L D FP T H+E  
Sbjct: 389 AGAFESLQWLQKMQPKKVVYVSCNPASLARDSSVLLASGYRIAQVGLVDMFPQTHHIEAM 448

Query: 360 VLL 362
           VL 
Sbjct: 449 VLF 451


>gi|237755943|ref|ZP_04584532.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691892|gb|EEP60911.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 419

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 165/383 (43%), Gaps = 72/383 (18%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL  K + L+  +L       +I +     EP  YR +A+     DG +L    + +
Sbjct: 81  YENQLLLKKEILKDQLLRIGKIETEIEKIIPSKEPFRYRNKAQLKF--DGKNLG--FYKK 136

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT----- 120
            + + + +DY          L+++      L PL   K F I Y    S+  I +     
Sbjct: 137 DSNDLVNVDY---------CLLLKEDIEKLLNPL---KKFLIKYAIMPSNIHIFSNTKEE 184

Query: 121 -LIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            LI    LD++     +      R+ +  +   I+ IG   K K          R ++ G
Sbjct: 185 KLIRFEFLDESQFSNIVYDMNIFREEIDGK---IKGIGFYAKHK----------RYSLLG 231

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK--GIQGDLLELYCGNGNFSL 225
             +++  + +        SF Q N     ++++ V++  K  G +  +++ YCG G  ++
Sbjct: 232 EDVVFENVGDHKFRVSMDSFFQVNVYQIKNLIDEVVSEIKDEGFK-KMVDFYCGVGTLTI 290

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             +++    L +E  + +V+ A+ NI  N + NVK ++  +         E+     KD 
Sbjct: 291 PASKYVKEALGIESNEEAVKDAKANIKHNKLKNVKFLKAQT---------EKGLKYAKD- 340

Query: 286 DIHSYRFKTIFVDPPRSGLDDATV---GMVQAYPHILYISCNPDSLCRDL-SILSTTHTI 341
               +  + +  DPPRSGL+   V     +Q    I+Y+SC+P +L RDL   L     +
Sbjct: 341 ----FLPEAVIFDPPRSGLNRKIVNEISQIQTVRKIIYVSCDPSTLSRDLRQFLENGFRL 396

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +++ L D FP T H+E   +L R
Sbjct: 397 KKVKLIDMFPQTYHIESISVLER 419


>gi|323131314|gb|ADX18744.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 437

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 268 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 324

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 325 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 369

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 370 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 429

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 430 SMVLFER 436


>gi|143582026|sp|Q0HXI0|RUMA_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 449

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 22/184 (11%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q NA IN  M    L+W LA   G +  +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 278 GNFVQVNAQINKAMVAQALDW-LAPQPGER--ILDLFCGMGNFSLPLAKLGAEVIGVEGV 334

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V  AR N AAN ++N+        + +  +  E    ++            + +DP 
Sbjct: 335 PEMVSQARENAAANGLSNLTFYH---GDLSADLSCEPWMGKI----------DKLLLDPA 381

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358
           R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + +++L L D FP T H+E 
Sbjct: 382 RAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEA 441

Query: 359 GVLL 362
             L 
Sbjct: 442 MALF 445


>gi|325969983|ref|YP_004246174.1| RNA methyltransferase, TrmA family [Spirochaeta sp. Buddy]
 gi|324025221|gb|ADY11980.1| RNA methyltransferase, TrmA family [Spirochaeta sp. Buddy]
          Length = 390

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 24/232 (10%)

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
           AL+  + Q  ++      K+   + Y++E L     +L +R   +SF Q N      +L 
Sbjct: 171 ALNMNREQTSMVLSEIPIKVLWGKGYIEEELC----SLTFRISHSSFFQVNVE-QAQVLY 225

Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVN 257
            +      I  D  +++ YCG G  +L+ A+   + V+ +E  + +VE A+ N   N++ 
Sbjct: 226 TLAMRMAQIDNDDVVVDAYCGTGTIALIAAKEGAKQVIGIESNEQAVEDAKLNAERNNLT 285

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAY 315
           N + +   +    + M + ++       D+       +F+DPPRSG D+      +  A 
Sbjct: 286 NAEFICADASAHLKEMSKAKQ-----SCDV-------LFLDPPRSGSDERFLAAAIRLAP 333

Query: 316 PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             I+YISCNP +L RDL  L   + + +  +   D FP+T H+E  VL+ R+
Sbjct: 334 KRIVYISCNPKTLERDLRYLLRFSDYEVSGIQPVDMFPHTEHLETVVLMTRR 385


>gi|24666579|ref|NP_649083.2| CG3808 [Drosophila melanogaster]
 gi|23093152|gb|AAF49200.3| CG3808 [Drosophila melanogaster]
          Length = 615

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN + N K    ++ +F ++
Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478

Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327
           M RE  +++   K +D+         VDPPR+GL   ++  ++   A   ++Y+SCNP S
Sbjct: 479 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 532

Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366
             R+   L+   + +              D FP+T H E  +L  R+P
Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580


>gi|195352293|ref|XP_002042647.1| GM14902 [Drosophila sechellia]
 gi|194124531|gb|EDW46574.1| GM14902 [Drosophila sechellia]
          Length = 615

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 20/168 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN + N K    ++ +F ++
Sbjct: 419 MLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKS 478

Query: 273 MRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327
           M RE  +++   K +D+         VDPPR+GL   ++  ++   A   ++Y+SCNP S
Sbjct: 479 MVREALYDQEPGKPLDL------IAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHS 532

Query: 328 LCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKP 366
             R+   L+   + +              D FP+T H E  +L  R+P
Sbjct: 533 AKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFEREP 580


>gi|326629015|gb|EGE35358.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 437

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 268 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 324

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 325 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 369

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 370 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 429

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 430 SMVLFER 436


>gi|313884344|ref|ZP_07818106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620422|gb|EFR31849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 456

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G  SL LA+    V A+EI   ++E A++N  AN + NV           +A
Sbjct: 312 VLDAYCGIGTISLALAQQAKEVYAMEIVPQAIEMAKFNAQANALTNVHF---------EA 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
            + E    + ++       F    VDPPR GLD   V  ++   P  I+Y+SCNP +  R
Sbjct: 363 GKAEVILPKWQE---QGLDFDVAVVDPPRKGLDRTFVDTLIDLNPGKIVYVSCNPATCAR 419

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D +I +   + ++ +   D FP T H+E  VL+ R
Sbjct: 420 DCAIFAEAGYEVKTIKPVDMFPQTVHVEALVLMTR 454


>gi|293557121|ref|ZP_06675675.1| RNA methyltransferase, TrmA family [Enterococcus faecium E1039]
 gi|291600690|gb|EFF30988.1| RNA methyltransferase, TrmA family [Enterococcus faecium E1039]
          Length = 267

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
            +K K+   RDY++++L   G+T  YR    SF Q N     ++ +  +   +  + D+ 
Sbjct: 68  GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 123

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ Y G G   L LA   D+V  +E+   ++E A++N   N + NV           +  
Sbjct: 124 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENV---------HYEVG 174

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
           + E+   + ++  I   +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD
Sbjct: 175 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 231

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             + +   + ++++   D FP T H+E     V+
Sbjct: 232 TKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 265


>gi|302185508|ref|ZP_07262181.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. syringae 642]
          Length = 451

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 19/202 (9%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D +  RL      L +R     F Q NA +N  M+E  L      + + +++L+CG GNF
Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282
           +L LA     V+AVE     VE A  N  +N ++NV+  +   S+  T A          
Sbjct: 319 ALPLAGMAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA---------- 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHT 340
              D  +  F  + +DPPR G  +    + +     +LY+SCNP +L RD + ++   + 
Sbjct: 369 ---DWAAEGFSAVLLDPPRDGAFEVVRQISKTGARRLLYVSCNPATLARDAVELIRQGYR 425

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           ++R  + D FP T H+E   L 
Sbjct: 426 LKRAGILDMFPQTAHVEAMALF 447


>gi|160914430|ref|ZP_02076645.1| hypothetical protein EUBDOL_00434 [Eubacterium dolichum DSM 3991]
 gi|158433588|gb|EDP11877.1| hypothetical protein EUBDOL_00434 [Eubacterium dolichum DSM 3991]
          Length = 455

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 15/157 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++LYCG G  S+ LA+    V+ VEI   ++  A+ N   N ++N+  V   +  + +
Sbjct: 311 EVIDLYCGVGTISMFLAQKAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAK 370

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329
            + ++ +            +   + VDPPR G DD T+  +V+  P  I+Y+SC+P +L 
Sbjct: 371 KLEKQGK------------KPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLA 418

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD+  L    +  + +   D FP++ H+E  VLL ++
Sbjct: 419 RDIKKLDEKGYAAQVVQPVDMFPFSFHVESIVLLQKR 455


>gi|9755890|emb|CAC01942.1| tRNA(m5U54)methyltransferase [Saccharomyces cerevisiae]
          Length = 569

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 80/161 (49%), Gaps = 23/161 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           L++ YCG+G FS+  ++  D+V+ VEI+  SV  A  N  AN V N + IV  + K F  
Sbjct: 422 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLF-- 479

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                      + ID  S    ++ +DPPR G D+  +  + AY    I+YISCN  S  
Sbjct: 480 -----------ESIDTPSEN-TSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQA 527

Query: 330 RDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD+          + H IE +  FD FP T H+E   ++ R
Sbjct: 528 RDVEYFLKETENGSAHQIESIRGFDFFPQTHHVESVCIMKR 568


>gi|228937723|ref|ZP_04100357.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228970603|ref|ZP_04131251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977182|ref|ZP_04137581.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228782491|gb|EEM30670.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228789069|gb|EEM37000.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821931|gb|EEM67925.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326938209|gb|AEA14105.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 459

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 165/382 (43%), Gaps = 44/382 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +++      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    V +      A   + GD  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAA-ALTGDEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL RD+  L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T H+E  V LVRK
Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459


>gi|331004223|ref|ZP_08327702.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330411496|gb|EGG90907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 490

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 97/207 (46%), Gaps = 27/207 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNA-GINV--HMLEWVLAATKGIQGDLLELYCGN 220
           RDY+ ERL      L ++    SF Q N+ G  V  ++    L  T G    + +LY G 
Sbjct: 304 RDYIIERLN----RLDFKITPFSFFQTNSKGAEVLYNVAGKYLGDTAGKS--VFDLYSGT 357

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  + +LA   ++V  VEI + +VEAA  N   N +NN         EF          +
Sbjct: 358 GTIAQLLASESEKVYGVEIVEEAVEAAIENAKNNGLNNC--------EFIAG-------D 402

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-ST 337
            LK +D   +    I +DPPR G+    +  +  +    I+YISC P S  RDL ++ + 
Sbjct: 403 VLKVVDTLGFSPDIIILDPPRDGIHPKALPKILEFGAKRIVYISCKPTSFVRDLKVMEAA 462

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + +E+    D FP T + EC VLL R
Sbjct: 463 GYRMEKCVGVDMFPNTVNCECVVLLSR 489


>gi|161615885|ref|YP_001589850.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365249|gb|ABX69017.1| hypothetical protein SPAB_03678 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 431

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|315651321|ref|ZP_07904348.1| TrmA family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315486420|gb|EFU76775.1| TrmA family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 418

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 19/169 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+QGD  LL+ Y G G   L+ ++    V++VE+ K S + A  N   N++ NVK     
Sbjct: 242 GLQGDEVLLDAYSGIGTIGLIASKCVKEVISVELNKDSHKDAITNAKINNIKNVKFYNAD 301

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYIS 322
           +  F            + D+     +   + +DPPR+G  D   A VG ++    ++Y+S
Sbjct: 302 ATAF------------INDLAAAGEKIDVVILDPPRTGSTDEFIAAVGRLKP-KKVVYVS 348

Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           CNP++L RDL +     +  E+  + D F +TRH+E  VLL +  S  H
Sbjct: 349 CNPETLARDLEVFKKHRYRFEKGMVVDCFCHTRHVEGVVLLSKLDSKNH 397


>gi|229541608|ref|ZP_04430668.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
 gi|229326028|gb|EEN91703.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
          Length = 468

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 163/386 (42%), Gaps = 57/386 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-PNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL +K   +++ + A    P L    I    P HYR + EF    DG    H    +
Sbjct: 98  YEGQLKQKTAHVKEAIAAQGFDPALVRDTIGMDNPWHYRNKMEFTFAPDGSLGLH----E 153

Query: 66  QTKERMRIDY---FMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLT 111
           Q   R  I      + G  +++  M E+ A ++            E LLR  + +  + T
Sbjct: 154 QGNFRKVIPLETCLIAGKEMVDGTM-EVAAWVKEHGLKGYDKDAHEGLLRHLMVRQSFAT 212

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            +    ++ L   +  D    E A  L + +  +  Q++ +     T    DR   ++  
Sbjct: 213 GE---MMLALFATKAPDGELAEAARDLAERITGKFPQVKSLLWLENTDWA-DRTQAEKTH 268

Query: 172 TVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
            ++GR  IY ++         ++F Q N      +++  L   +  + + +++L+CG G 
Sbjct: 269 VLSGRDFIYDEMGGYRYRIWFDTFFQTNPVQAQKLVDLALEMGRPEKTEKMIDLFCGVGT 328

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           FSL  A     +  +EI + S+E+A+ N   N ++N   +   ++               
Sbjct: 329 FSLPFADRVGELAGIEIVETSIESAKRNAKDNGISNTYFLAKDAR--------------- 373

Query: 283 KDIDIHSYRFKT---IFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILST 337
           K ID     F     + +DPPRSG     +  + +A P  I+Y+SCNPD+   D+  L  
Sbjct: 374 KGIDEVLESFGNPELLLLDPPRSGAGGKVMRKIGRAKPQRIVYVSCNPDTFATDIKELEP 433

Query: 338 -THTIERLALFDQFPYTRHMECGVLL 362
             + +  +   D FP+T H+EC  L+
Sbjct: 434 FGYKLTAVQPVDLFPHTVHVECVTLM 459


>gi|330877092|gb|EGH11241.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 451

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
             F Q NA +N  M+E    W+  A       +++L+CG GNF+L LA     V+AVE  
Sbjct: 279 GDFIQVNAAVNTAMIEQALHWLAPAA---DERVMDLFCGLGNFALPLASLAKEVVAVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              VE A  N  +N ++NV+  +   S+  T A             D  +  F  + +DP
Sbjct: 336 ATMVERAAINAMSNDLHNVRFFQADLSQPLTHA-------------DWAAEGFSAVLLDP 382

Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357
           PR G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP T H+E
Sbjct: 383 PRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVE 442

Query: 358 CGVLL 362
              L 
Sbjct: 443 AMALF 447


>gi|188588342|ref|YP_001919973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251777708|ref|ZP_04820628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|188498623|gb|ACD51759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E3 str. Alaska E43]
 gi|243082023|gb|EES47913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 450

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 31/216 (14%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212
           K  +   RDY+ E+L      L ++    SF Q     N    E + +  +   G     
Sbjct: 258 KVNVLYGRDYIQEKLL----GLNFKISPFSFFQ----TNTKGAESLYSLVRDFMGSSENK 309

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LYCG G    ++A +  +V+ +E+ + +VEAA+ N   N +NN + +     E  +
Sbjct: 310 VVFDLYCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGDVAEIIK 369

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
            ++ + +                I +DPPRSG+    +  V  +  P I+Y+SCNP +L 
Sbjct: 370 TVKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPEIIYVSCNPKTLV 414

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            DL +L    + I +  + D FP T H E  V L++
Sbjct: 415 TDLKVLVERGYKIIQTQVKDMFPNTPHAETIVKLIK 450


>gi|168242718|ref|ZP_02667650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194447436|ref|YP_002046926.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|238909737|ref|ZP_04653574.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|194405740|gb|ACF65959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205338177|gb|EDZ24941.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 431

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|222055874|ref|YP_002538236.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32]
 gi|221565163|gb|ACM21135.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32]
          Length = 437

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 151/350 (43%), Gaps = 53/350 (15%)

Query: 39  EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI-EMMATIRL- 96
           EP  YR R +  + + G       +  ++ + + I    PG   I    I + + ++RL 
Sbjct: 118 EPYGYRSRVQLKVNYQGGKTRLGFYRPKSHQVVDI----PGHCAITHKSINDTLESLRLL 173

Query: 97  -----EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
                +P     + QID +    D++I  ++ H     A       + + L   +    L
Sbjct: 174 MEGCPDP---GNISQID-IARGDDESISVIVNHAGASVA------EVSEYLLQHREISDL 223

Query: 152 IGR-----ANKTKICLDRDYVDERL---TVAG---RTLIYRQIENSFTQPNAGINVHMLE 200
           IG       N T      +++  R+   T+ G   +TL + +  ++F+Q N   N+ ++ 
Sbjct: 224 IGSMFIRHKNSTTSIFGAEHLSYRISGNTLPGGSEKTLFFSK--DAFSQINYQQNMQLIR 281

Query: 201 WV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            V   AA  G +  +L+LYCGNGNFS+ LA     V   E  +PS+  AR N   N V N
Sbjct: 282 VVSDFAALTGKE-KVLDLYCGNGNFSIPLADKAAHVTGFEGYEPSIADARKNAEWNGVTN 340

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--P 316
           +      S    + +   RE             F  + +DPPR+G  +  +  +QA    
Sbjct: 341 ISFHCSDSAAAVKKLAAARE------------TFDVVVLDPPRNGAAE-VMHHIQALNAD 387

Query: 317 HILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365
            I+Y+SC+P +L RDL IL      +  +   D FP T H+E   LL + 
Sbjct: 388 RIIYVSCDPATLARDLGILKKNGFQVINIQGVDMFPQTYHLESVTLLTKS 437


>gi|205353903|ref|YP_002227704.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273684|emb|CAR38674.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 431

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|113969454|ref|YP_733247.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-4]
 gi|113884138|gb|ABI38190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-4]
          Length = 463

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 22/184 (11%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q NA IN  M    L+W LA   G +  +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 292 GNFVQVNAQINKAMVAQALDW-LAPQPGER--ILDLFCGMGNFSLPLAKLGAEVIGVEGV 348

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V  AR N AAN ++N+        + +  +  E    ++            + +DP 
Sbjct: 349 PDMVSQARENAAANGLSNLTFYH---GDLSADLSCEPWMGKI----------DKLLLDPA 395

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358
           R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + +++L L D FP T H+E 
Sbjct: 396 RAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEA 455

Query: 359 GVLL 362
             L 
Sbjct: 456 MALF 459


>gi|197247468|ref|YP_002147867.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211171|gb|ACH48568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 431

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|52079174|ref|YP_077965.1| putative RNA methyltransferase YefA [Bacillus licheniformis ATCC
           14580]
 gi|52784541|ref|YP_090370.1| YefA [Bacillus licheniformis ATCC 14580]
 gi|52002385|gb|AAU22327.1| putative RNA methyltransferase YefA [Bacillus licheniformis ATCC
           14580]
 gi|52347043|gb|AAU39677.1| YefA [Bacillus licheniformis ATCC 14580]
          Length = 462

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N + N +       E    
Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAE---FEVGEAEVV 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           + +  E     D         T+ VDPPR G D+A +  +++  P  ++Y+SCNP +L R
Sbjct: 372 IPKWYEEGIAAD---------TLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLAR 422

Query: 331 DLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
           DL +L     + R +   D FP+T H+EC   LV K
Sbjct: 423 DLRVLEDGGYVTREVQPVDMFPHTSHVECVTKLVLK 458


>gi|255533504|ref|YP_003093876.1| TrmA family RNA methyltransferase [Pedobacter heparinus DSM 2366]
 gi|255346488|gb|ACU05814.1| RNA methyltransferase, TrmA family [Pedobacter heparinus DSM 2366]
          Length = 481

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 24/212 (11%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  +  E +T AGR  I+ ++E         SF Q N+    H L  +     G  GD L
Sbjct: 275 DTIFDQEVITYAGRDHIFEEMEGLKFKIGVKSFYQTNSD-QAHELYKITKEFAGFSGDEL 333

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             +LY G G  +  +AR   +V+ +E    ++E A++N   N ++N        K+    
Sbjct: 334 VYDLYTGAGTIANFVARSVKQVVGIEYVPTAIEDAKFNATLNGIDNTVFYAGDMKDILT- 392

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCR 330
               REF     I  H  +   +  DPPR+G+    V   +      I+Y+SCN  +  R
Sbjct: 393 ----REF-----IAEHG-KPDVVITDPPRAGMHADVVERLLEMEAGKIVYVSCNAATQAR 442

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL++L   + + R+   D FP+T+H+E  VLL
Sbjct: 443 DLALLKEKYEVVRIKPVDMFPHTQHVENVVLL 474


>gi|168231048|ref|ZP_02656106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471802|ref|ZP_03077786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458166|gb|EDX47005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205334540|gb|EDZ21304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 431

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALINAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|16766263|ref|NP_461878.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167550177|ref|ZP_02343934.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993449|ref|ZP_02574543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197265036|ref|ZP_03165110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|207858223|ref|YP_002244874.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|20140074|sp|Q8ZME1|RUMA_SALTY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|16421508|gb|AAL21837.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197243291|gb|EDY25911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205324674|gb|EDZ12513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328450|gb|EDZ15214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|206710026|emb|CAR34381.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261248093|emb|CBG25928.1| Uracil-5--methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995093|gb|ACY89978.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159518|emb|CBW19037.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913979|dbj|BAJ37953.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321225637|gb|EFX50691.1| 23S rRNA Uracil-5- -methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|332989828|gb|AEF08811.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 431

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVIGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|323484926|ref|ZP_08090281.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum
           WAL-14163]
 gi|323401807|gb|EGA94150.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum
           WAL-14163]
          Length = 457

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 112/237 (47%), Gaps = 31/237 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           ++   LH +   +    +   T++   +DY  E L      L +R    SF Q N+ +  
Sbjct: 243 KMAGILHTKNDSLADAVKDEGTEVLYGKDYFFEELL----GLKFRISPFSFFQTNS-LGA 297

Query: 197 HML-----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            +L     E+V   TKG    + +LY G G  + +LA   ++V+ VEI K +VEAA+ N 
Sbjct: 298 EVLYEKTREYV-GETKGKV--VFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENA 354

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N ++N         EF          + LK +D  + + + I +DPPR G+    +  
Sbjct: 355 RLNGLDNC--------EFIAG-------DVLKVVDELTDKPELIVLDPPRDGIHPKAIEK 399

Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  +    ++Y+SC P SL RDL IL    + +E+    D FP T ++E  VLL RK
Sbjct: 400 IIGFGVERMVYVSCKPTSLARDLVILQENGYRVEKGCCVDMFPGTANVETVVLLGRK 456


>gi|228913060|ref|ZP_04076699.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228846465|gb|EEM91478.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 459

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           DL +L    +  + +   D FP+T H+EC  LL
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVECVTLL 455


>gi|138893992|ref|YP_001124445.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265505|gb|ABO65700.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
          Length = 463

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 169/388 (43%), Gaps = 55/388 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV-PNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           QYE QL  K + ++ ++      PN+    I    P HYR + EF    +G    H    
Sbjct: 96  QYEGQLRHKTEHVKALLEQHGFDPNIVRETIGMEHPWHYRNKMEFTFSPEGLLGLH---- 151

Query: 65  QQTKERMRIDY---FMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYL 110
           +Q   R  I      + G  ++ A M E+    R            E LLR  + +  + 
Sbjct: 152 EQGNFRQIISLETCLIAGERIVKAAM-EVARWARDHQLPGYHKDTHEGLLRHVMVRESFA 210

Query: 111 TSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
           T +   A+  T      L  A  +   R+  AL   K  + L  RA   +I  ++ +V  
Sbjct: 211 TGEVMVALFATEAPEGELKQAADDLTERITKALPEVKSLLWLENRAWADRIQAEQTHV-- 268

Query: 170 RLTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
              +AGR  IY ++         ++F Q N      ++E  L   K    + +++L+CG 
Sbjct: 269 ---LAGRDFIYDELCGFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHEKMIDLFCGV 325

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G FSL  A+    +  +EI + S+E+A+ N   N ++N   +              R+  
Sbjct: 326 GTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFL-------------ARDAR 372

Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS-ILS 336
           R  D  +  + R + + +DPPRSG     +  + ++ P  I+Y+SCNP++   D++ ++ 
Sbjct: 373 RGIDEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNPETFAADIAELVP 432

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             +T++ +   D FP+T H+E   L+ R
Sbjct: 433 FGYTLKTVQPVDMFPHTAHVELVALMSR 460


>gi|325106371|ref|YP_004276025.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM
           12145]
 gi|324975219|gb|ADY54203.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM
           12145]
          Length = 465

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 28/218 (12%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKG 208
           K     D+D +    T  G   IY ++E         SF Q N+ +  + L  +     G
Sbjct: 260 KNDTIFDQDVI----TYRGNPFIYEEMEGLKFRVGPKSFYQTNS-LQAYELYKITREFAG 314

Query: 209 IQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + G+ L  +LY G G  +  +AR    V+ VE    ++E A+ N A N++ N K      
Sbjct: 315 LSGNELVYDLYTGTGTIANFVARQAREVVGVEYVPSAIEDAKVNSAINNIPNTKFYAGDM 374

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCN 324
           K+   A     EF     I  H  +   +  DPPR+G+    V   M      ++Y+SCN
Sbjct: 375 KDVLSA-----EF-----IAEHG-KPDVVITDPPRAGMHADVVARLMDMEAEKVVYVSCN 423

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
             +  RDL+IL   + + R+   D FP+T+H+E  VLL
Sbjct: 424 AATQARDLAILKDKYDVARIKPVDMFPHTQHVENVVLL 461


>gi|294649349|ref|ZP_06726781.1| 23S rRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824789|gb|EFF83560.1| 23S rRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 463

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 32/194 (16%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242
           FTQ N+ +N  M++      +  +G+ +L+L+CG GNFSL LAR      +V+ VE +  
Sbjct: 286 FTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVGDTGQVIGVEASDE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V  A  N  AN +N           F+Q +         KD   H +    F  + +DP
Sbjct: 346 MVLRATENAKANSLNQAIF-------FSQDL--------TKDFSHHPWAKQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           PRSG       ++Q  P+     I+Y+SCNP +L RD  +L+   + +++ A+ D F +T
Sbjct: 391 PRSG----AFEVMQYVPNFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAVLDMFTHT 446

Query: 354 RHMECGVLLVRKPS 367
            H+E   L  +  S
Sbjct: 447 EHVESIALFEKNES 460


>gi|163938416|ref|YP_001643300.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|229009910|ref|ZP_04167129.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
 gi|229131423|ref|ZP_04260319.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|163860613|gb|ABY41672.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis
           KBAB4]
 gi|228652007|gb|EEL07948.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|228751341|gb|EEM01148.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
          Length = 459

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++E A+ N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330
             +E             +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL R
Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 425 DVETLMESYEVEYVQPVDMFPHTAHVENVVKLVRK 459


>gi|229165425|ref|ZP_04293209.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
 gi|228618023|gb|EEK75064.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
          Length = 459

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++E A+ N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330
             +E             +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL R
Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 425 DVETLMESYEVEYVQPVDMFPHTAHVENVVKLVRK 459


>gi|62181467|ref|YP_217884.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224584748|ref|YP_002638546.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|75481161|sp|Q57KF9|RUMA_SALCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|62129100|gb|AAX66803.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224469275|gb|ACN47105.1| 23S rRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322715951|gb|EFZ07522.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|291524456|emb|CBK90043.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale DSM
           17629]
          Length = 493

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 175/410 (42%), Gaps = 61/410 (14%)

Query: 10  YEQQLAEKVDRLRQMML---AFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGD-DLY 59
           YE+QL  K +++R  ++    F    L       +    P  YR +A+F + +D D ++ 
Sbjct: 87  YEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGADNPYRYRNKAQFPVGYDRDGNIV 146

Query: 60  HIMFDQQTKERMRID---YFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQID 108
              +  ++   + +D     +P +  I  ++ E M    + P        L+R  L +  
Sbjct: 147 TGFYASRSHNIIPVDDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLVRHVLIRYG 206

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWREC-AIRLRDALHARKYQIQL-------IGRAN---- 156
           +    S Q +V L+ +   D    +C A    D L  R  +I         I + N    
Sbjct: 207 FT---SKQIMVCLVING--DSLEAKCRAGNAADILCERLSKIDGMTSISYNINKENTNVI 261

Query: 157 --KTKICL-DRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
             K  +C+  R Y+++ +        T  G  + Y+    SF Q N      +    LA 
Sbjct: 262 LGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTALAF 321

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             G+ G+  + +LYCG G  SL L++   +V  VEI   +++ A+ N   N + N +   
Sbjct: 322 A-GLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIKDAKNNAKLNGITNAQFFV 380

Query: 264 MSSKE-FTQAMRREREFNRLKDIDIHSYRF-----KTIFVDPPRSGLDDATVG-MVQAYP 316
             ++E   Q     ++  ++ D    + R        I VDPPR G D+  +  M+   P
Sbjct: 381 GKAEEVLPQFYENAKKTEKITDDKASTGRTDMLRPDVIVVDPPRKGCDEKCLDTMLAMLP 440

Query: 317 H-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             I+Y+SC+  +L RDL IL    + + +   FDQF +T H+E   LL R
Sbjct: 441 ERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490


>gi|69246826|ref|ZP_00604135.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
 gi|257878457|ref|ZP_05658110.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,230,933]
 gi|257882876|ref|ZP_05662529.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,502]
 gi|257889346|ref|ZP_05668999.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,410]
 gi|257894358|ref|ZP_05674011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,408]
 gi|258616021|ref|ZP_05713791.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|260560044|ref|ZP_05832222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
 gi|261207467|ref|ZP_05922153.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
 gi|289565878|ref|ZP_06446319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           D344SRF]
 gi|293559994|ref|ZP_06676502.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1162]
 gi|294621045|ref|ZP_06700237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           U0317]
 gi|314937822|ref|ZP_07845139.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a04]
 gi|314941632|ref|ZP_07848512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133C]
 gi|314948879|ref|ZP_07852248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0082]
 gi|314951003|ref|ZP_07854070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133A]
 gi|314993004|ref|ZP_07858400.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133B]
 gi|314996451|ref|ZP_07861494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a01]
 gi|68195059|gb|EAN09521.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
 gi|257812685|gb|EEV41443.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,230,933]
 gi|257818534|gb|EEV45862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,502]
 gi|257825706|gb|EEV52332.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,410]
 gi|257830737|gb|EEV57344.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,408]
 gi|260073879|gb|EEW62203.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
 gi|260078358|gb|EEW66063.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
 gi|289162338|gb|EFD10197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           D344SRF]
 gi|291599359|gb|EFF30384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           U0317]
 gi|291606082|gb|EFF35508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1162]
 gi|313589433|gb|EFR68278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a01]
 gi|313592527|gb|EFR71372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133B]
 gi|313596858|gb|EFR75703.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133A]
 gi|313599523|gb|EFR78366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133C]
 gi|313642853|gb|EFS07433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a04]
 gi|313644669|gb|EFS09249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0082]
          Length = 457

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
            +K K+   RDY++++L   G+T  YR    SF Q N     ++ +  +   +  + D+ 
Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 313

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ Y G G   L LA   D+V  +E+   ++E A++N   N + NV           +  
Sbjct: 314 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENV---------HYEVG 364

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
           + E+   + ++  I   +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD
Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             + +   + ++++   D FP T H+E     V+
Sbjct: 422 AKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455


>gi|160893946|ref|ZP_02074725.1| hypothetical protein CLOL250_01501 [Clostridium sp. L2-50]
 gi|156864324|gb|EDO57755.1| hypothetical protein CLOL250_01501 [Clostridium sp. L2-50]
          Length = 402

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   +V +    RV+ VE+   ++  A+ N   N + N++     +  F   
Sbjct: 254 VIDAYCGIGTIGIVASDRAKRVIGVELNAEAIRDAKINSRMNKIENIEFYANDAGRF--- 310

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP-HILYISCNPDSLCR 330
                    L D D H      +F+DPPRSG  ++    +V   P  ++YISC PD+L R
Sbjct: 311 ------MVELADADEH---IDVVFMDPPRSGSTEEFLSSVVTLSPRKVVYISCGPDTLAR 361

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L+T  + + ++  FD FP+T H E   LL R
Sbjct: 362 DLKYLTTHGYQVLKITPFDLFPFTEHTEVVTLLTR 396


>gi|143581977|sp|Q0HL77|RUMA_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 449

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 22/184 (11%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q NA IN  M    L+W LA   G +  +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 278 GNFVQVNAQINKAMVAQALDW-LAPQPGER--ILDLFCGMGNFSLPLAKLGAEVIGVEGV 334

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V  AR N AAN ++N+        + +  +  E    ++            + +DP 
Sbjct: 335 PDMVSQARENAAANGLSNLTFYH---GDLSADLSCEPWMGKI----------DKLLLDPA 381

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358
           R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + +++L L D FP T H+E 
Sbjct: 382 RAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEA 441

Query: 359 GVLL 362
             L 
Sbjct: 442 MALF 445


>gi|294614134|ref|ZP_06694055.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636]
 gi|291592984|gb|EFF24572.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636]
          Length = 457

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
            +K K+   RDY++++L   G+T  YR    SF Q N     ++ +  +   +  + D+ 
Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 313

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ Y G G   L LA   D+V  +E+   ++E A++N   N + NV           +  
Sbjct: 314 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENV---------HYEVG 364

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
           + E+   + ++  I   +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD
Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             + +   + ++++   D FP T H+E     V+
Sbjct: 422 TKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455


>gi|229083613|ref|ZP_04215941.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
 gi|228699703|gb|EEL52360.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
          Length = 465

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N   N+        M++ EF   
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNN--------MTNAEFAVG 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                  N  K+  I      TI VDPPR G D+A +  +++  P  ++Y+SCNP +L R
Sbjct: 374 EAEVVIPNWYKEGIIAD----TIVVDPPRKGCDEALLNTIIEMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|302670309|ref|YP_003830269.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302394782|gb|ADL33687.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 475

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 17/161 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD   L+ Y G G   L+ + H   V++VE+   +V+ A+ N   N+V+N+      +
Sbjct: 327 LKGDEVALDCYSGVGTIGLIASPHVKEVISVELNPDAVKDAKINAKINNVSNITFYENDA 386

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCN 324
             F Q M    +   L            +F+DPPRSG     +  M+   P  I+YISC+
Sbjct: 387 TRFMQQMADSGDKADL------------VFMDPPRSGSTPEFIESMINLSPDKIVYISCS 434

Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           PDSL RDL +++   + +++    D FP+TR +E   LL +
Sbjct: 435 PDSLARDLELITKGGYKVKKAIPVDMFPFTRSIEMVTLLTK 475


>gi|194445322|ref|YP_002042208.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194403985|gb|ACF64207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|222153492|ref|YP_002562669.1| RNA methyltransferase [Streptococcus uberis 0140J]
 gi|222114305|emb|CAR42966.1| putative RNA methyltransferase [Streptococcus uberis 0140J]
          Length = 451

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 155/388 (39%), Gaps = 58/388 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y QQL  K D +RQ +  F+    + ++         P HYR + +F        +   +
Sbjct: 90  YPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDNPWHYRAKLQFQTRSFSGKVVAGL 149

Query: 63  F----------------DQQTKE------RMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           +                DQ T+E      ++   Y +P   + N   IE + TI +   +
Sbjct: 150 YAEGSHRLIPIDNCLVQDQSTQEIVNHITQLLDQYKIP---IYNERKIEGLRTIMIRKAI 206

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            ++  QI ++TS+       ++         +  A+ +  +  +  Y        +KT+I
Sbjct: 207 ASQTLQIIFITSKEVHLAPIILDMTKTYPEIKTVALNINRSKSSELY-------GDKTEI 259

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++E +      L  R    +F Q N      +   V+ A +  + D +++ YCG
Sbjct: 260 IWGQDTIEEEVLDYHFALSPR----AFYQLNPKQTSVLYAQVVEALEVSESDHIIDAYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G      A+    +  ++I   ++E A+ N       N       +++      ++   
Sbjct: 316 VGTIGFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGKAEDIIPKWYQD--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                     YR   I VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  LS 
Sbjct: 373 ---------GYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVELSK 423

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +T++ +   D FP+T   E  V L RK
Sbjct: 424 VYTVDYIQSVDMFPHTARTEAVVKLRRK 451


>gi|324994724|gb|EGC26637.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK678]
          Length = 464

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+H  +V  VE+   +VE +R N A N + N   V  S++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCASAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVALLVK 463


>gi|168463892|ref|ZP_02697809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195633311|gb|EDX51725.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|303246914|ref|ZP_07333190.1| RNA methyltransferase, TrmA family [Desulfovibrio fructosovorans
           JJ]
 gi|302491621|gb|EFL51504.1| RNA methyltransferase, TrmA family [Desulfovibrio fructosovorans
           JJ]
          Length = 450

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 23/220 (10%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           +H+ +     +    +    L  D+++ER+      +  R   ++F Q N       L  
Sbjct: 241 VHSVRRAPTTVAIGERQVFALGTDHLEERIG----DVRLRISADAFAQTNT-TAAEKLYA 295

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V+A   G   D  L ++YCG G  +L LA  F+ V  VE  K +V  A+ +   +   N 
Sbjct: 296 VVAQAAGTAPDRALWDVYCGCGGIALALAPGFETVYGVEADKRAVADAQKSAKLSERENC 355

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH- 317
            + +        A             D+ + +   + +DPPR+G D  T+  V  A P  
Sbjct: 356 -VFKTGDAATVLA-------------DLAATKPAVVTLDPPRAGADGQTLAAVMDAAPEK 401

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           ++Y+SCNP +L RDL ILS  +T+ ++   D FP+T H+E
Sbjct: 402 LVYVSCNPATLARDLKILSDLYTLTQVTPVDLFPHTAHIE 441


>gi|56414909|ref|YP_151984.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168261899|ref|ZP_02683872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|197363837|ref|YP_002143474.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|81359864|sp|Q5PEJ4|RUMA_SALPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|56129166|gb|AAV78672.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095314|emb|CAR60871.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205349066|gb|EDZ35697.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|320105759|ref|YP_004181349.1| (Uracil-5)-methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319924280|gb|ADV81355.1| (Uracil-5)-methyltransferase [Terriglobus saanensis SP1PR4]
          Length = 450

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 171/397 (43%), Gaps = 71/397 (17%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           YE+QL  K   LR M+    VP    LQ   +EP  YR R    +     D +       
Sbjct: 83  YEEQLRIKETILRTMLERNGVPVPEKLQTHSAEPWGYRNRIRLRL-----DSF------- 130

Query: 67  TKERMRIDYFMPGSLL--------INALMI--EMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            + R R+ Y M GS +        I A ++     A +    L+ A+  ++++    S+Q
Sbjct: 131 -EGRWRVGYVMRGSRVFMEARECPIAAPLLWRAAQAFVASSQLVPAQSREVEFFCDASEQ 189

Query: 117 AI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-----------KTKICLDR 164
            + ++L  +  +++  RE   + R    A +  +  +  A             +K  +  
Sbjct: 190 TVQLSLSLNAAMEEMERESPKQFRKLCDAIRVSVPELSGAGLFVRPVTASTKTSKRGVPA 249

Query: 165 DYVDERLTVA-------------GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           +  +E   VA             GR   +      F Q N  +   ++E  L   +G  G
Sbjct: 250 EQAEEIEIVAWGEPKLLYKVDALGRKYTHAIARGGFFQVNRYLVQELVELALGERQG--G 307

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA-ANHVNNVKIVRMSSKEFT 270
              +L+ G G F+  L   F +V+AVE+A+ +  + R  +A ++H    + VR +   F 
Sbjct: 308 LAWDLFAGAGLFTQALVDRFQQVIAVEVAERAFGSLRDFVAHSSH----QAVRETCVGF- 362

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
             +R+      ++  D+       I VDPPR+GL +   G++       I+Y+SC+P++L
Sbjct: 363 --LRKRVASTAMRKPDL-------IVVDPPRAGLGEELCGLIAKVEAKEIVYVSCDPETL 413

Query: 329 CRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            RDL  +L++ + +  L L D FP T HME   +L R
Sbjct: 414 SRDLRKLLNSGYRLAELHLVDLFPQTYHMETVTVLQR 450


>gi|257898308|ref|ZP_05677961.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com15]
 gi|257836220|gb|EEV61294.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com15]
          Length = 457

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 103/214 (48%), Gaps = 20/214 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
            +K K+   RDY++++L   G+T  YR    SF Q N     ++ +  +   +  + D+ 
Sbjct: 258 GDKEKVLYGRDYIEDQLL--GKT--YRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIV 313

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ Y G G   L LA   D+V  +E+   ++E A++N   N + NV           +  
Sbjct: 314 IDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENV---------HYEVG 364

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
           + E+   + ++  I   +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD
Sbjct: 365 KAEKVMKKWQEKGI---KPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARD 421

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             + +   + ++++   D FP T H+E     V+
Sbjct: 422 AKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 455


>gi|322614234|gb|EFY11166.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620952|gb|EFY17810.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624015|gb|EFY20849.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628246|gb|EFY25035.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633365|gb|EFY30107.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636058|gb|EFY32766.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639394|gb|EFY36082.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643744|gb|EFY40295.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648856|gb|EFY45303.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655151|gb|EFY51461.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658018|gb|EFY54286.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664119|gb|EFY60318.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667088|gb|EFY63260.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673136|gb|EFY69243.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677873|gb|EFY73936.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681047|gb|EFY77080.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685644|gb|EFY81638.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194783|gb|EFZ79970.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196534|gb|EFZ81682.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323205053|gb|EFZ90036.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207746|gb|EFZ92692.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212702|gb|EFZ97519.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214815|gb|EFZ99563.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222544|gb|EGA06909.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226424|gb|EGA10632.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230697|gb|EGA14815.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234952|gb|EGA19038.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238991|gb|EGA23041.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244651|gb|EGA28657.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247267|gb|EGA31233.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251799|gb|EGA35664.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257486|gb|EGA41176.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263271|gb|EGA46808.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267523|gb|EGA51007.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272712|gb|EGA56118.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|322412380|gb|EFY03288.1| RNA methyltransferase, TrmA family protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 452

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 158/391 (40%), Gaps = 64/391 (16%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPAGYEQFDIRHTKGMKKPNHYRAKLQFQLRLFGGSVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYL----T 111
           F Q +   + ID+     L+ +AL  E++ TI       RL       +  I  +     
Sbjct: 149 FSQGSHRLVPIDH----CLVQDALTQEIINTITQLVDKYRLPVYNERNIAGIRTVMVRKA 204

Query: 112 SQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
             SDQ  + ++  +      L+ D  +        AL+        I R+  + I     
Sbjct: 205 QASDQVQIVIVSSKEISLAGLIGDVTKAFPQIKTVALN--------INRSKSSDI----- 251

Query: 166 YVDERLTVAGRTLIYRQI--------ENSFTQPNA-GINVHMLEWVLAATKGIQGDLLEL 216
           Y +E   + G+  IY ++          +F Q N     V   E V A   G    +++ 
Sbjct: 252 YGEETEILWGQEAIYEEVLDYGFALSPRAFYQLNPEQTEVLYGEVVEALDVGTTDHIIDA 311

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G+  L  A     V  ++I   ++E A+ N      +N          + +A + E
Sbjct: 312 YCGVGSIGLAFAGKVKSVRGMDIIPEAIEDAQKNAKVMGFDNT---------YYEAGKAE 362

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
               +        YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  
Sbjct: 363 DIIPKWYK---QGYRADAIIVDPPRTGLDDKLLKTILRYQPKQMVYVSCNTSTLARDLVQ 419

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L+T + +  +   D FP+T   E  V L +K
Sbjct: 420 LATVYDVHYIQSVDMFPHTARTEAVVKLQKK 450


>gi|312134353|ref|YP_004001691.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor owensensis
           OL]
 gi|311774404|gb|ADQ03891.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor owensensis
           OL]
          Length = 451

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 24/212 (11%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           +E + + G + I  +I N        SF Q N+     +   V+   + I  +++ ++Y 
Sbjct: 252 EEDILIWGSSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYSQVVKYIRNIDAEIVFDVYS 311

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  S+ +A    +V A+EI + +VE A+ +   N ++N++ +  S+         E E
Sbjct: 312 GIGTISMFVAPFCKKVYAIEIVEDAVEDAKKSSKNNGISNIEFICGSA---------EIE 362

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335
             +L    I     + + +DPPRSG +   +  +  Q  P+I+Y+SCNP +L RD SIL 
Sbjct: 363 IPKLMKSGIIP---QAVILDPPRSGCEKELLESLIKQKIPNIIYVSCNPSTLARDSSILC 419

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           S  + +  +   D FP T H+EC  LL +  S
Sbjct: 420 SNGYEVVEVQPVDMFPQTFHVECVALLKKGCS 451


>gi|228950978|ref|ZP_04113099.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229068174|ref|ZP_04201481.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
 gi|229077781|ref|ZP_04210408.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
 gi|229177011|ref|ZP_04304406.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
 gi|229188691|ref|ZP_04315730.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228594880|gb|EEK52660.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228606486|gb|EEK63912.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
 gi|228705509|gb|EEL57868.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
 gi|228714988|gb|EEL66856.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
 gi|228808705|gb|EEM55203.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 459

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 165/382 (43%), Gaps = 44/382 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +++      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    V +      A   + GD  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAA-ALTGDEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL RD+  L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T H+E  V LVRK
Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459


>gi|168820323|ref|ZP_02832323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205342808|gb|EDZ29572.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320087382|emb|CBY97147.1| hypothetical protein SENTW_3066 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|187932429|ref|YP_001884796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B str. Eklund 17B]
 gi|187720582|gb|ACD21803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B str. Eklund 17B]
          Length = 450

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 31/216 (14%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212
           K  +   RDY+ E+L      L ++    SF Q     N    E + +  +   G     
Sbjct: 258 KVNVLYGRDYIQEKLL----GLDFKISPFSFFQ----TNTKGAESLYSLVRDFMGSSENK 309

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LYCG G    ++A +  +V+ +E+ + +VEAA+ N   N +NN + +     E  +
Sbjct: 310 VVFDLYCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGDVAEIIK 369

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
            ++ + +                I +DPPRSG+    +  V  +  P I+Y+SCNP +L 
Sbjct: 370 TVKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPEIVYVSCNPKTLV 414

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            DL +L    + I +  + D FP T H E  V L++
Sbjct: 415 TDLKVLIERGYKIIQTQVKDMFPNTPHAETIVKLIK 450


>gi|197119265|ref|YP_002139692.1| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem]
 gi|197088625|gb|ACH39896.1| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem]
          Length = 572

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 21/193 (10%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           I+    +SF Q N+G    + E V  LA  KG +  ++++YCG G  SL LA     V+ 
Sbjct: 394 IFNLSPHSFFQVNSGAARIIYEKVRELANLKGTE-RVIDVYCGIGGISLYLADQAREVVG 452

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E  + +V  A  N A NHV N         E   A+    E       D+       I 
Sbjct: 453 IEFVEAAVADATINAALNHVENCHF------EAGDAVHLIDEIGEEGGADL-------IV 499

Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPY 352
           ++PPR G D+  +  V A   P I+Y+SC+P++L RDL ILS     T+E +   D FP 
Sbjct: 500 LNPPRKGCDEKVLRSVAAINPPRIIYVSCSPETLARDLDILSGLGYRTVE-VQPVDMFPQ 558

Query: 353 TRHMECGVLLVRK 365
           T H+E   LL +K
Sbjct: 559 TVHVEDVALLEKK 571


>gi|295114059|emb|CBL32696.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76]
          Length = 457

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+EC  LL R
Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIECVGLLTR 454


>gi|228995690|ref|ZP_04155353.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|229003319|ref|ZP_04161149.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228757937|gb|EEM07152.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228764067|gb|EEM12951.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
          Length = 465

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N+        M++ EF   
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNN--------MTNAEFAVG 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                  N  K+  I      TI VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 374 EAEVVIPNWYKEGVIAD----TIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|229028277|ref|ZP_04184413.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
 gi|228733041|gb|EEL83887.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
          Length = 459

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 166/382 (43%), Gaps = 44/382 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + + K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPSVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    V + +    A   + GD  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGDEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL RD+  L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T H+E  V LVRK
Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459


>gi|228989496|ref|ZP_04149481.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
           12442]
 gi|228770221|gb|EEM18800.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
           12442]
          Length = 465

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N+        M++ EF   
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNN--------MTNAEFAVG 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                  N  K+  I      TI VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 374 EAEVVIPNWYKEGVIAD----TIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|226954324|ref|ZP_03824788.1| 23S rRNA (uracil-5-)-methyltransferase(23S
           rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp.
           ATCC 27244]
 gi|226834902|gb|EEH67285.1| 23S rRNA (uracil-5-)-methyltransferase(23S
           rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp.
           ATCC 27244]
          Length = 463

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 32/194 (16%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242
           FTQ N+ +N  M++      +  +G+ +L+L+CG GNFSL LAR      +V+ VE +  
Sbjct: 286 FTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVGDTGQVIGVEASDE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V  A  N  AN +N           F+Q +         KD   H +    F  + +DP
Sbjct: 346 MVLRATENAKANSLNQAIF-------FSQDL--------TKDFSHHPWAKQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           PRSG       ++Q  P      I+Y+SCNP +L RD  +L+   + +++ A+ D F +T
Sbjct: 391 PRSG----AFEVMQYVPSFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAVMDMFTHT 446

Query: 354 RHMECGVLLVRKPS 367
            H+E   L  +  S
Sbjct: 447 EHVESIALFEKNES 460


>gi|313899252|ref|ZP_07832768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
 gi|312955932|gb|EFR37584.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
          Length = 453

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   + ++R   +V+ VEI + +VE A+ N   N ++N++ V   +  +   
Sbjct: 308 VLDAYCGIGTIGMYVSRFVKQVIGVEINRDAVEDAKINAKINQISNIRFVCEDAGRYMTR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP-HILYISCNPDSLCR 330
           +  E++            R   + +DPPRSG  +D    +V+  P  +LYISCNP +  R
Sbjct: 368 LAAEKK------------RLDVVIMDPPRSGSSEDFIKSLVRMKPKQVLYISCNPQTQIR 415

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           DL +          +L   D FP+T H+E  V LVR
Sbjct: 416 DLQMFERMGYRVQGKLVPVDMFPHTVHVESIVKLVR 451


>gi|295394400|ref|ZP_06804624.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972752|gb|EFG48603.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 379

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 28/195 (14%)

Query: 185 NSFTQPN----AGINVHMLEWV-----LAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
            SF Q N    +G+   + EWV      A + G    + +L+CG G F+L +A    +V 
Sbjct: 197 QSFVQTNTVVASGLYEQVREWVSKAQAPATSHGRDLRVWDLFCGVGGFALHVAGPGRQVT 256

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE+A  +VE+AR  +A  +   +  +   + +++      R+  ++ D+         +
Sbjct: 257 GVEVAPAAVESAR-EVAGENDLGLNFICADAAQWS------RQQTQVPDV---------L 300

Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
            V+PPR G+ +   G V+    PH++Y SCNP +L  DL+ +   + IE+    D FP+T
Sbjct: 301 IVNPPRRGMGEDMAGWVEQSGIPHVIYSSCNPRTLAADLAKMP-GYRIEQARFLDMFPHT 359

Query: 354 RHMECGVLLVRKPSG 368
            H E  V L R+  G
Sbjct: 360 SHAEVVVRLARQAGG 374


>gi|294141950|ref|YP_003557928.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea
           DSS12]
 gi|293328419|dbj|BAJ03150.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea
           DSS12]
          Length = 453

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 112/239 (46%), Gaps = 32/239 (13%)

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN---------SFTQPNAGI 194
           A  +++ LI + N++ + L  D   + L +    L Y +++N         +F Q NA I
Sbjct: 232 ALSHKVSLIVQGNESDLTLIGDEA-KTLVIGSNELPYYELDNGIKLSFTPGNFVQVNAEI 290

Query: 195 NVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N  M+    +W+          +L+L+CG GNFSL LA+    V+ VE     V+ A+ N
Sbjct: 291 NNAMVNQAVDWLSVEP---HERVLDLFCGVGNFSLPLAKKGASVIGVEGVPEMVQQAKLN 347

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              + ++NV        + +  + +E    ++            + +DP R+G  ++   
Sbjct: 348 ATLSQLDNVSFFHT---DLSADLSKESWLGKV----------DKLLLDPARAGAFESLQW 394

Query: 311 MVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           + +  P  I+Y+SC+P +L RD   +L   + + +LAL D FP T H+E   L   K S
Sbjct: 395 LKKMKPKSIVYVSCDPATLARDSEPLLKHGYKLTKLALIDMFPQTHHIEAMALFELKGS 453


>gi|148244456|ref|YP_001219150.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326283|dbj|BAF61426.1| RNA methyltransferase, TrmA family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 439

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 22/196 (11%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
            +I   +   F Q N  +N  M+   +   +  + D +++L+CG GNF+L +AR+   V+
Sbjct: 259 NIIMEFLPTDFVQVNFKLNQQMVSLAVELLELNESDKVIDLFCGLGNFTLPIARYAKYVV 318

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E     VE A+YN   N +NNV   R      +   +    F   K        +   
Sbjct: 319 GIEGDLGLVERAKYNAEKNSINNVDFYR------SDLCKEVVGFEWFK-----GKTYNKA 367

Query: 296 FVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349
            +DP RSG     + +V+  P      ++Y+SCNP +L RD L ++    T+E   + D 
Sbjct: 368 LIDPSRSG----AIEIVELLPKLGVTRLVYVSCNPATLARDTLKLIKLGFTLETAGVIDM 423

Query: 350 FPYTRHMECGVLLVRK 365
           FP T H+E   L V++
Sbjct: 424 FPQTSHVESIALFVKR 439


>gi|254520598|ref|ZP_05132654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
           7_2_43FAA]
 gi|226914347|gb|EEH99548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
           7_2_43FAA]
          Length = 454

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 17/163 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + + YCG G  +L L++   +V  VEI K +++ A  N   N+V N +     
Sbjct: 304 GLTGEEVVFDAYCGTGTITLFLSQKAKKVYGVEIIKAAIDNANENAKINNVKNAEFFVGK 363

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISC 323
           S+E             + D+       + I VDPPR G D   +  +  A P+ ++Y+SC
Sbjct: 364 SEEI------------IPDLIDKGIIPEVIVVDPPRKGCDIKLLEAIGDAKPNRVVYVSC 411

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +P +L RDL IL    +   ++   D FP+T H+EC  LL  K
Sbjct: 412 DPSTLARDLKILEEKGYKTAKVQPVDMFPHTSHVECVALLKNK 454


>gi|153824701|ref|ZP_01977368.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MZO-2]
 gi|149741657|gb|EDM55686.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MZO-2]
          Length = 344

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+
Sbjct: 206 MWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 265

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                E                + V+PPR GL       ++A    HILY SCNP ++ +
Sbjct: 266 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMAK 310

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D++ L++   I R+  FD FP+T H E   LLVRK
Sbjct: 311 DIAELASYQMI-RVQWFDMFPHTNHAEVLTLLVRK 344


>gi|28868899|ref|NP_791518.1| TrmA family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|37088361|sp|Q885Y8|RUMA_PSESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|28852138|gb|AAO55213.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 451

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
             F Q NA +N  M+E    W+  A       +++L+CG GNF+L LA     V+AVE  
Sbjct: 279 GDFIQVNAAVNTAMIEQALHWLAPAA---DERVMDLFCGLGNFALPLASLAKDVVAVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              VE A  N  +N ++NV+  +   S+  T A             D  +  F  + +DP
Sbjct: 336 ATMVERAAVNAMSNDLHNVRFFQADLSQPLTHA-------------DWAAEGFSAVLLDP 382

Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357
           PR G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP T H+E
Sbjct: 383 PRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVE 442

Query: 358 CGVLL 362
              L 
Sbjct: 443 AMALF 447


>gi|200388031|ref|ZP_03214643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199605129|gb|EDZ03674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQINEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD   L+   + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALANAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|77919963|ref|YP_357778.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77546046|gb|ABA89608.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter carbinolicus DSM
           2380]
          Length = 489

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 15/154 (9%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LYCG G  +L LA+   RV+ VE+ + +V  A+ N A N++ N + +   + E     
Sbjct: 341 LDLYCGIGGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAEL---- 396

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRD 331
                   L+D+ +      T  ++PPRSG D +    + Q  P  I+Y+SCNPD+L RD
Sbjct: 397 --------LQDLIVDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARD 448

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L+ L    +    +   D FP T H+E    LV+
Sbjct: 449 LAELQKLGYRTAEIQPVDMFPQTAHVESVARLVK 482


>gi|331016787|gb|EGH96843.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 451

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
             F Q NA +N  M+E    W+  A       +++L+CG GNF+L LA     V+AVE  
Sbjct: 279 GDFIQVNAAVNTAMIEQALHWLAPAA---DERVMDLFCGLGNFALPLASLAKDVVAVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              VE A  N  +N ++NV+  +   S+  T A             D  +  F  + +DP
Sbjct: 336 ATMVERAAVNAMSNDLHNVRFFQADLSQPLTHA-------------DWAAEGFSAVLLDP 382

Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357
           PR G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP T H+E
Sbjct: 383 PRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVE 442

Query: 358 CGVLL 362
              L 
Sbjct: 443 AMALF 447


>gi|291286810|ref|YP_003503626.1| (Uracil-5)-methyltransferase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883970|gb|ADD67670.1| (Uracil-5)-methyltransferase [Denitrovibrio acetiphilus DSM 12809]
          Length = 387

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 92/183 (50%), Gaps = 23/183 (12%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N  I+  + ++VL  ++G  G  LELYCG+G  +L +AR  +++ AVE   PS+
Sbjct: 225 NSFLQGNRYISNALQDFVLEHSEGRLG--LELYCGSGYLTLPMARKCEKIDAVESYAPSI 282

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A      N   +V +      E  + M +       + +D+       I  DPPR+G+
Sbjct: 283 RLAERTKLKNVTWHVAM-----SENMKGMGK-------RSLDM-------IVADPPRTGM 323

Query: 305 DDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +      ++       +YISC+P++  RD + LS  + IE + + D FP + H+E   LL
Sbjct: 324 EKEVCNYIKNSDADRFIYISCDPNTFARDAARLSEFYKIEHMVICDMFPGSYHLETMALL 383

Query: 363 VRK 365
            RK
Sbjct: 384 RRK 386


>gi|1209277|gb|AAA91052.1| pCTHom1 [Chlamydia trachomatis]
          Length = 333

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 43/255 (16%)

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
             LLD      +I   + L AR           +T       ++ ++L++ GR+ ++   
Sbjct: 106 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 160

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232
             SF QP +          L A K IQ             LL+LYCG G   ++LA +  
Sbjct: 161 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGRGTIGILLAPYVK 210

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +++ VE+   +V +A+ NI  N V ++++    +K+F +  R E     L   DI     
Sbjct: 211 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 258

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++ S+L    + +  +   DQ
Sbjct: 259 --VVIDPPRCGMQNKALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRHMQPIDQ 316

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E  VLL R
Sbjct: 317 FPHTNHLENIVLLER 331


>gi|297156656|gb|ADI06368.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 447

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 104/212 (49%), Gaps = 29/212 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER   AGRT  +R  E  F Q +      ++E V+      +GD+ L+LYCG G 
Sbjct: 255 RPFVRER--AAGRT--WRVGEGGFWQVHPKAADLLVEAVMQGLMPRKGDMALDLYCGVGL 310

Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA        VL +E  K +VE AR+N+      ++  VR+   +  Q + R    
Sbjct: 311 FAGALAERVGERGAVLGIESGKRAVEDARHNL-----QDLDRVRIEHGKVEQILPR---- 361

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
             + + D+       I +DPPR+G    TV  + +     I Y++C+P +L RDL+    
Sbjct: 362 TGITEADL-------IVLDPPRAGAGKETVARLASLGPRRIAYVACDPAALARDLTYFRE 414

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
             +   RL  FD FP T H+EC  +L  +P+G
Sbjct: 415 AGYVPRRLRAFDLFPVTHHVECVAIL--EPAG 444


>gi|160872624|ref|ZP_02062756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rickettsiella grylli]
 gi|159121423|gb|EDP46761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rickettsiella grylli]
          Length = 443

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 21/230 (9%)

Query: 144 ARKYQIQLIGRAN--KTKICL---DRDYVDERL-TVAGRTLIYRQIENSFTQPNAGINVH 197
           A+KY +QL  +    KT  C+   +   +  RL   A R+L +    + F Q NA IN  
Sbjct: 226 AKKYSVQLYLQPGNEKTTHCIWPENPQLLSYRLQNKAHRSLEFFFEPHHFIQINATINQA 285

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           M++  +        D +L+L+CG GNFSL LA     V+ +E     VE A+ N   N +
Sbjct: 286 MIQHAIELLSPHFSDRILDLFCGLGNFSLPLALRCQSVVGIEGHSALVEQAKINARHNAI 345

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AY 315
           NN +     + + T ++ +E    +          F  I +DPPRSG  +    + +   
Sbjct: 346 NNTQFY---TADLTGSILKEVWAQQ---------TFNKILLDPPRSGALEVIQQIARWKV 393

Query: 316 PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             ++YISCNP +L RD   ++   + +ER  + D FP T H E   L  +
Sbjct: 394 EKMVYISCNPATLARDSEELIKQGYHLERAGIMDMFPQTHHSEAICLFTQ 443


>gi|258622549|ref|ZP_05717571.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM573]
 gi|258585249|gb|EEW09976.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM573]
          Length = 375

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREITPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ LS+   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALVPKHILYSSCNPQTMVKDIAELSSYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|324993953|gb|EGC25872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK405]
 gi|327463215|gb|EGF09536.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1]
 gi|327489947|gb|EGF21736.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1058]
          Length = 465

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+H  +V  VE+   +VE +R N A N + N   V  S++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCASAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 464


>gi|291541472|emb|CBL14582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus bromii
           L2-63]
          Length = 494

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 22/164 (13%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+ YCG G   ++ A++    V+  E+   +V  A  N  AN++ N++  +  + EF  
Sbjct: 244 VLDTYCGIGTIGIIAAKNGAGNVIGAELNGDAVRDAIVNARANNLKNIRFYKADAGEF-- 301

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDS 327
            MR   + +   D+         +F+DPPR+G D    D+ + M  +   ++Y+SCNP++
Sbjct: 302 -MREATDEDEKPDV---------VFMDPPRAGSDRKFLDSLIKM--SPKKVVYVSCNPET 349

Query: 328 LCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLV-RKPSG 368
           L RDL+ L+  + +  +++   D FP+T H+E  VLL  +KP G
Sbjct: 350 LARDLAYLTQNSPYKAQKIQPVDMFPHTAHIETVVLLSHKKPDG 393


>gi|302875488|ref|YP_003844121.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
 gi|307687940|ref|ZP_07630386.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           cellulovorans 743B]
 gi|302578345|gb|ADL52357.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
          Length = 455

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 25/236 (10%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           +++  LH          + ++ K+   +DY+ E L      L ++    SF Q N+    
Sbjct: 240 KIKGILHTINDSFSDAVKIDELKVLYGQDYITENLL----GLNFKISPLSFFQTNSK-GA 294

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             L  ++    G   D  + +LYCG G    ++A    +V+ +E+ + +V+AA  N   N
Sbjct: 295 EKLYSIVKEYIGESDDKVVFDLYCGTGTIGQIVAPKAKKVIGLELIEEAVKAAEINAELN 354

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N K +     E  + ++ + +               TI +DPPR+G+  A +  V  
Sbjct: 355 GLTNCKFIAGDVAETIKTIKEKPD---------------TIILDPPRAGVSSAAMKYVID 399

Query: 315 Y--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +   +I+Y+SCNP+SL  +L  L +  + ++++ + D FP+T H+E  V L RK S
Sbjct: 400 FDAKNIVYVSCNPESLVVNLKELEAAGYRVDKVRVKDMFPHTPHVETVVRLQRKHS 455


>gi|229083730|ref|ZP_04216051.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
 gi|228699588|gb|EEL52252.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
          Length = 458

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 15/164 (9%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           AA  G +  +++ YCG G   L LA     V  +++   ++E A+ N   +   N K   
Sbjct: 308 AALTGTE-KIVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIEDAKKNARRHGFTNTKYEA 366

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYI 321
             ++++     +E             +R   I VDPPR+G DD  +  +++  P  ++Y+
Sbjct: 367 GKAEQWLPKWVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYV 414

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP SL RD+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 415 SCNPSSLARDVKALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 458


>gi|260551956|ref|ZP_05825818.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624]
 gi|260405359|gb|EEW98854.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624]
          Length = 463

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 32/184 (17%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242
           FTQ N  +N  M++      +  QG+ +L+L+CG GNFSL LAR      +V+ VE ++ 
Sbjct: 286 FTQVNGTVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGANGQVVGVEASEE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+ A  N      NN+  V   S++ T            KD   HS+    F  + +DP
Sbjct: 346 MVQRATDNAK---CNNLVQVNFFSQDLT------------KDFSHHSWANQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           PR+G  +    ++Q  P+     I+Y+SCNP +L RD  +L+   + +++ A+ D F +T
Sbjct: 391 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLAQHGYKLKKAAVMDMFTHT 446

Query: 354 RHME 357
            H+E
Sbjct: 447 EHVE 450


>gi|168181980|ref|ZP_02616644.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
 gi|237796828|ref|YP_002864380.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           Ba4 str. 657]
 gi|182674796|gb|EDT86757.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
 gi|229263636|gb|ACQ54669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           Ba4 str. 657]
          Length = 461

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++   +V  VEI K +++ A  N   N+VNN +     S+E    
Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAEDNAEENNVNNTEFFVGRSEEV--- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    + D+     +   + VDPPR G +   +  + A     I+Y+SC+P +L R
Sbjct: 373 ---------IPDLINKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLAR 423

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL IL+   +  + +   D FP T H+E  VL+ R
Sbjct: 424 DLGILNGLGYETKEVQPVDMFPQTSHVETIVLIQR 458


>gi|283851428|ref|ZP_06368709.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. FW1012B]
 gi|283573166|gb|EFC21145.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. FW1012B]
          Length = 449

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 19/226 (8%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           +H+ +     I +  +    L  DY++E++  +   +       + T+  AG+   +   
Sbjct: 241 VHSVRRAPAAIAQGERQVFALGVDYLEEQVGPSRLHVSADAFAQTNTEAAAGLYALVAAA 300

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             +A  G+  DL   YCG G  +L LA HF  V  +E  K +V  A   + +  ++NV  
Sbjct: 301 AGSAPDGVAWDL---YCGCGGITLALAPHFGTVFGLESDKRAVADA---VKSAELSNVAN 354

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-IL 319
               + +   A+            D+ +     + +DPPRSG   +    ++ A P  I+
Sbjct: 355 CIFKAGDAATALS-----------DLAATHPAVVVLDPPRSGAAPEVLSALLDAAPKKIV 403

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           Y+SCNP +L RDL IL   + + R+   D FP T H+E    L R+
Sbjct: 404 YVSCNPGTLARDLKILGDLYAVTRVTPVDMFPQTAHIEAVAELERR 449


>gi|262164471|ref|ZP_06032209.1| RNA methyltransferase TrmA family [Vibrio mimicus VM223]
 gi|262026851|gb|EEY45518.1| RNA methyltransferase TrmA family [Vibrio mimicus VM223]
          Length = 375

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREISPTQMWDLFCGVGGFALHCAAPDTSVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|229522457|ref|ZP_04411873.1| RNA methyltransferase TrmA family [Vibrio cholerae TM 11079-80]
 gi|229340442|gb|EEO05448.1| RNA methyltransferase TrmA family [Vibrio cholerae TM 11079-80]
          Length = 375

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMAKDIAELASYQMI-RVQWFDMFPHTNHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|157961009|ref|YP_001501043.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella pealeana
           ATCC 700345]
 gi|226725390|sp|A8H1S1|RUMA_SHEPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|157846009|gb|ABV86508.1| RNA methyltransferase, TrmA family [Shewanella pealeana ATCC
           700345]
          Length = 445

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 144/341 (42%), Gaps = 54/341 (15%)

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR--LEPL 99
           HYR RA    W          FD+ TK    I      S   + + I+  A +   L  L
Sbjct: 135 HYRRRARLATW----------FDKNTK---HISLGFRASSSSDVVEIQSCAVLAEPLSAL 181

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +    F ++ L+ +     V L       D      +R+   L + K + +L+  ANK +
Sbjct: 182 IPDLAFMLNQLSGKKALGHVELTQA----DNGNFVVLRVTKVL-SDKDKARLVEFANKHE 236

Query: 160 ICL---DRDYVDERLTVAGRTLIY----RQIE-----NSFTQPNAGINVHML----EWVL 203
           + +   D D   E L  AG    Y      I+      +F Q N  +N  M+    EW L
Sbjct: 237 VIVLLQDDDAQCEHLNGAGEQPFYALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEW-L 295

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           +   G +  +L+L+CG GNFSL LA+    V+ VE     VE AR N   + ++ V    
Sbjct: 296 SPKAGER--VLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYH 353

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YIS 322
               + +  + +E    ++            + +DP R+G  ++   + +  P  L Y+S
Sbjct: 354 A---DLSADLSKEPWLGKV----------DKMLIDPARAGAYESMQSLKKLKPKALVYVS 400

Query: 323 CNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
           CNP SL RD   IL   + ++++ L D FP T H+E   L 
Sbjct: 401 CNPASLARDSEVILKQGYQLKKIGLIDMFPQTHHLESMALF 441


>gi|315645285|ref|ZP_07898410.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
           V453]
 gi|315279327|gb|EFU42633.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
           V453]
          Length = 502

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+H  +V  VEI K ++E AR N   N + +V+    +S++    
Sbjct: 359 VIDAYCGIGTISLFLAQHAKKVYGVEIVKEAIEDARANAELNGMKHVEFEVGASEDV--- 415

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                   R K+  I +     I VDPPR G D   +  +++  P  ++Y+SCNP +L R
Sbjct: 416 ------IPRWKEQGIEA---DVIVVDPPRKGCDPRLLETILEMKPERVVYVSCNPSTLAR 466

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           DL +L      T+E +   D FP+T H+E   +L+R
Sbjct: 467 DLRVLKDGGYRTVE-VTPVDMFPHTVHVESVAVLMR 501


>gi|229528169|ref|ZP_04417560.1| RNA methyltransferase TrmA family [Vibrio cholerae 12129(1)]
 gi|229334531|gb|EEO00017.1| RNA methyltransferase TrmA family [Vibrio cholerae 12129(1)]
 gi|327485907|gb|AEA80313.1| RNA methyltransferase, TrmA family [Vibrio cholerae LMA3894-4]
          Length = 375

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAKRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|327438590|dbj|BAK14955.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
          Length = 454

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 15/148 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V+ VEI + ++E A+ N A N   N       ++E    
Sbjct: 311 VIDAYCGIGSISLFLAQKAGHVMGVEIVEQAIEDAKRNAALNGFTNTYFEAGPAEEVI-- 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
               R +   K+ D+       + VDPPR G D+A +  +  Q    ++Y+SCNP +L R
Sbjct: 369 ---PRWYKEGKEADV-------LVVDPPRKGCDEALLSTIIEQKPKRVVYVSCNPATLAR 418

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357
           DL IL    +  + +   D FP+T H E
Sbjct: 419 DLRILEDGGYKTQEVQPVDMFPHTTHCE 446


>gi|153828064|ref|ZP_01980731.1| putative TrmA family RNA methyltransferase [Vibrio cholerae 623-39]
 gi|148876473|gb|EDL74608.1| putative TrmA family RNA methyltransferase [Vibrio cholerae 623-39]
          Length = 375

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMAKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|218710562|ref|YP_002418183.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio splendidus
           LGP32]
 gi|254766924|sp|B7VK72|RUMA_VIBSL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|218323581|emb|CAV19816.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio splendidus
           LGP32]
          Length = 442

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 96/199 (48%), Gaps = 29/199 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLA 228
           G TL +    N F Q N  +N  M    +EW+       Q D  +L+L+CG GNFSL +A
Sbjct: 263 GVTLPFE--PNHFIQVNQKVNQQMVAQAIEWLEP-----QADERVLDLFCGLGNFSLPIA 315

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V+ VE     V+ A  N A N ++N         EF QA   E   ++L   +  
Sbjct: 316 QQSAFVVGVEGVDEMVQQATANAALNQLSNT--------EFYQANLEEDLSSQLWAKE-- 365

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLA 345
             +F  + +DP R+G     V  + A     ++Y+SCNP +L RD  S+    + + +L 
Sbjct: 366 --KFDKVLLDPARAGA-SGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLG 422

Query: 346 LFDQFPYTRHMECGVLLVR 364
           + D FP+T H+E   L ++
Sbjct: 423 MLDMFPHTSHLESMALFIK 441


>gi|160878319|ref|YP_001557287.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160426985|gb|ABX40548.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
           ISDg]
          Length = 468

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 28/227 (12%)

Query: 158 TKICLDRD-------YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV 202
           T ICL+++         +E + + G T I   I +        SF Q N      + E  
Sbjct: 248 TSICLNKNTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELA 307

Query: 203 LAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L  T     +L+ +LYCG G  SL LA+    V  VEI   ++E A+ N   N +NN + 
Sbjct: 308 LDYTDLTGNELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEF 367

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHIL 319
              +++E      +        D+         I VDPPR G D++ +  + A     I+
Sbjct: 368 FVGAAEEVLPKQYQLSGGKIYADV---------IVVDPPRKGCDESLLETIVAMEPKRIV 418

Query: 320 YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           Y+SC+P +L RDL  ++   + ++++   DQFP++ H+E   LL R+
Sbjct: 419 YVSCDPATLARDLKYLIEHGYDLKKVRPVDQFPHSVHVESVTLLTRR 465


>gi|300764680|ref|ZP_07074671.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
 gi|300514566|gb|EFK41622.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
          Length = 459

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 16/155 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
            + E    +  +     +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL++L+  + I  +   D FP T H+EC  LL R
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHIECVGLLTR 456


>gi|323484127|ref|ZP_08089497.1| hypothetical protein HMPREF9474_01248 [Clostridium symbiosum
           WAL-14163]
 gi|323402569|gb|EGA94897.1| hypothetical protein HMPREF9474_01248 [Clostridium symbiosum
           WAL-14163]
          Length = 575

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 155/387 (40%), Gaps = 56/387 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQT 67
           Y+QQLAEK  R+ +++         I   EP+HYR +      HD  G+ L  +      
Sbjct: 215 YKQQLAEKQKRMEELLKGICPVKPIIGMKEPLHYRNKVHAVFGHDRKGNPLSGVY----- 269

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA-KLFQIDYLTS-------------Q 113
           KE   I   +   L+ +    E++ TIR   +L++ K+   D  T               
Sbjct: 270 KEGTHILVPVEKCLIEDEKADEIIGTIR--GMLKSFKIRTFDEDTGYGFLRHVLVRRGFA 327

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDY 166
           + + +V L+    +  +       LR+        IQ I          +K  +   R Y
Sbjct: 328 TGEIMVVLVTASPVFPSKNNFVKALREKHPEITTIIQNINNRSTSMVLGDKEHVLYGRGY 387

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFS 224
           +++ L      L +R    SF Q N+     +L        G+ G    L+ YCG G   
Sbjct: 388 IEDVLC----GLRFRISSKSFYQVNS-AQTELLYNKALQLAGLTGKEKALDAYCGIGTIG 442

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L+ +R    V+ VE+   +V  A  N   N V N++     +  F   M  + E      
Sbjct: 443 LIASRKAGEVIGVELNPDAVRDAVQNAKMNDVKNIQFYCNDAGRFIVNMAEKGE-----K 497

Query: 285 IDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTH 339
           +D+       I +DPPRSG      DA   M      ++Y+SC P++L RDL   +   +
Sbjct: 498 VDV-------ILMDPPRSGSTKEFIDAVAKM--GPERVVYVSCGPETLVRDLRWFMGNGY 548

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKP 366
                   D F  T H+E  VLLVRKP
Sbjct: 549 RAVEAWPVDMFGGTGHVETAVLLVRKP 575


>gi|254284557|ref|ZP_04959524.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae
           AM-19226]
 gi|150425342|gb|EDN17118.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae
           AM-19226]
          Length = 375

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+
Sbjct: 237 MWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                E                + V+PPR GL       ++A    HILY SCNP ++ +
Sbjct: 297 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D++ L++   I R+  FD FP+T H E   LLVRK
Sbjct: 342 DIAELASYQMI-RVQWFDMFPHTNHAEVLTLLVRK 375


>gi|33355823|gb|AAQ16244.1| RNA methyl transferase-like [Enterococcus faecalis]
          Length = 571

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 16/160 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 323 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 375 LAEEL----LPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 430

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLV-RKPSG 368
           D+++L+   +  + +   D FP T H+E  VLL  +KP G
Sbjct: 431 DIALLTEGGYEAKEIQPVDNFPQTTHIETVVLLSHKKPDG 470


>gi|297748873|gb|ADI51419.1| tRNA (Uracil-5-) -methyltransferase [Chlamydia trachomatis D-EC]
 gi|297749753|gb|ADI52431.1| tRNA (Uracil-5-) -methyltransferase [Chlamydia trachomatis D-LC]
          Length = 430

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 43/255 (16%)

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
             LLD      +I   + L AR           +T       ++ ++L++ GR+ ++   
Sbjct: 203 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 257

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232
             SF QP +          L A K IQ             LL+LYCG G   ++LA +  
Sbjct: 258 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGIIGILLAPYVK 307

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +++ VE+   +V +A+ NI  N V ++++    +K+F +  R E     L   DI     
Sbjct: 308 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 355

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++ S+L    + + R+   DQ
Sbjct: 356 --VVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRRMQPIDQ 413

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E  VLL R
Sbjct: 414 FPHTNHLENIVLLER 428


>gi|312888540|ref|ZP_07748110.1| 23S rRNA m(5)U-1939 methyltransferase [Mucilaginibacter paludis DSM
           18603]
 gi|311298987|gb|EFQ76086.1| 23S rRNA m(5)U-1939 methyltransferase [Mucilaginibacter paludis DSM
           18603]
          Length = 475

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 91/205 (44%), Gaps = 16/205 (7%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGN 222
           +Y+ E +   G+ + +R    SF Q N+ I    L  +     G +G  L  +LY G G 
Sbjct: 281 EYIHEEMPSGGKMIRFRIGAKSFYQTNS-IQALRLYEITRDFAGFKGHELVYDLYTGAGT 339

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            +  +A H   V+ VE    ++E A+ N   N + N K      K+   A          
Sbjct: 340 IANFIAAHVKEVVGVEYVPQAIEDAKINSGINGITNTKFFAGDMKDVLVA---------- 389

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHT 340
            D      +   I  DPPR+G+    V   M      I+Y+SCN  +  RDL +L   + 
Sbjct: 390 -DFVAEHGKPDVIITDPPRAGMHPDVVNRLMEIEAEKIVYVSCNAATQARDLLVLKEKYD 448

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           + ++   D FP+T+H+E  VLLV K
Sbjct: 449 VMKIQPVDMFPHTQHVENVVLLVLK 473


>gi|108758357|ref|YP_631969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myxococcus xanthus DK
           1622]
 gi|108462237|gb|ABF87422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myxococcus xanthus DK
           1622]
          Length = 431

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 149/337 (44%), Gaps = 45/337 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR- 101
           YR RA  H    G   Y   F +++ ER+ ++     + ++ AL        +L PLL+ 
Sbjct: 128 YRRRAVLHPAGKGALGY---FGRRSHERVPVEVCGALTPVLTAL------PGKLAPLLKP 178

Query: 102 -AKLFQIDYLTSQSDQAIVTL-----IYHRLLDDAWREC-AIRLRDA-LHARKYQIQLIG 153
            AK  +   L ++ D+A   +     +  R L+ A     A+RL  A L  ++   +L+G
Sbjct: 179 LAKDAEEVLLLAEGDKAAFAVNLSGPVTARHLEAAEAAVRALRLEGAVLTPKEGSARLLG 238

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           +         R Y   R  V    L  R   ++F Q +A  NV ++   +      + D 
Sbjct: 239 KPAL------RSYSPLRPEV---PLYLRP--DAFAQAHAEANVGLVTSAVYELGARESDT 287

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +LELY GNGNF+  LA     VL VE +   VE A+ +     V NV+ ++  +++    
Sbjct: 288 VLELYSGNGNFTFPLAGTAASVLGVESSPVGVELAQRSAHEGGVTNVRFIQGDARKVCDG 347

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD 331
           +  E+             RF     DPPR+G       M       ++Y++C+P SL RD
Sbjct: 348 LVAEQR------------RFDVCLADPPRAGAPGLAKWMTALGVRRVVYVACDPASLARD 395

Query: 332 LS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            + +++  +    L + D FP T H+E  V+   +P+
Sbjct: 396 AAGLVAAGYKPLALQVVDMFPQTHHVEA-VMSFERPA 431


>gi|238925258|ref|YP_002938775.1| hypothetical RNA methyltransferase-like protein [Eubacterium
           rectale ATCC 33656]
 gi|238876934|gb|ACR76641.1| hypothetical RNA methyltransferase-like protein [Eubacterium
           rectale ATCC 33656]
          Length = 493

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 174/407 (42%), Gaps = 55/407 (13%)

Query: 10  YEQQLAEKVDRLRQMML---AFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGD-DLY 59
           YE+QL  K +++R  ++    F    L       +    P  YR +A+F + +D D ++ 
Sbjct: 87  YEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGTDNPYRYRNKAQFPVGYDRDGNIV 146

Query: 60  HIMFDQQTKERMRID---YFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQID 108
              +  ++   + ++     +P +  I  ++ E M    + P        L+R  L +  
Sbjct: 147 TGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLVRHVLIRYG 206

Query: 109 YLTSQSDQAIV----TLIYHRLLDDAWRECAIRLR--DALHARKYQIQ------LIGRAN 156
           + + Q    +V    +L   R   +A      RL   D + +  Y I       ++G+  
Sbjct: 207 FTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMTSISYNINKENTNVILGK-- 264

Query: 157 KTKICLDRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
           KT     R Y+++ +        T  G  + Y+    SF Q N      +    LA   G
Sbjct: 265 KTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTALAFA-G 323

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + G+  + +LYCG G  SL L++   +V  VEI   ++E A+ N   N + N +     +
Sbjct: 324 LTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNNAKLNGITNAQFFVGKA 383

Query: 267 K----EFTQAMRREREFNRLKDIDIHS--YRFKTIFVDPPRSGLDDATVG-MVQAYPH-I 318
           +    +F +  +++           H+   R   I VDPPR G D+  +  M+   P  I
Sbjct: 384 EDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGCDEKCLDTMLAMSPERI 443

Query: 319 LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +Y+SC+  +L RDL IL    + + +   FDQF +T H+E   LL R
Sbjct: 444 VYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490


>gi|229154191|ref|ZP_04282314.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|228629281|gb|EEK85985.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
          Length = 459

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 42/381 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226
           + +I   + +        +F Q N    V +  E   AA       +++ YCG G   L 
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +++   ++  AR N   +   N K     ++++     +E          
Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344
              +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E +
Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYI 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP+T H+E  V LVRK
Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459


>gi|331001672|ref|ZP_08325195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330413393|gb|EGG92760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 394

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 19/164 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G++GD  LL+ Y G G   L+ ++    V++VE+ K + + A  N   N++ NVK     
Sbjct: 242 GLEGDEVLLDAYSGIGTIGLIASKSVKEVISVELNKDAHKDAITNAKINNIKNVKFYNAD 301

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYIS 322
           +  F            + D+     +   + +DPPR+G  +   A VG ++    ++Y+S
Sbjct: 302 ATAF------------INDLAAAGEKIDVVILDPPRTGSTEEFIAAVGRLKP-KKVVYVS 348

Query: 323 CNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CNP++L RDL S     +  E+  +FD F +TRH E  VL+ RK
Sbjct: 349 CNPETLARDLESFKRQRYGFEKGMVFDCFCHTRHAEVVVLMSRK 392


>gi|78189981|ref|YP_380319.1| 23S rRNA methyltransferase/RumA [Chlorobium chlorochromatii CaD3]
 gi|78172180|gb|ABB29276.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium chlorochromatii
           CaD3]
          Length = 477

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 24/256 (9%)

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           ++ +TS  D A V   Y  +L  A  E  + + + + +RK     +    +  +     +
Sbjct: 233 VNLVTSWHD-AEVMARYSAMLHHAMPEQKMTVVNNITSRK---NGVATGEEEVVISGEGF 288

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ--GDLLELYCGNGNFS 224
           + ERL      L +R   NSF Q N+     +L   L A   +Q    + +LYCG G  +
Sbjct: 289 ITERLC----GLDFRISANSFFQTNSA-QAEVLYQTLLAVADLQPTDTVYDLYCGTGTIT 343

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L +A H  +V+ +E+ + ++  A+ N   N + N   +    K+F   +    E  +   
Sbjct: 344 LCMAAHCHQVIGLEVVESAIRDAQNNALRNGITNAHFLLADLKDFHTLLPLLEEHGKP-- 401

Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTI 341
                   + I  DPPR+G+   A   MVQ  P  I+Y+SCNP SL RD   L+   +++
Sbjct: 402 --------RVIVTDPPRAGMHPKALATMVQLQPERIIYVSCNPASLARDGKELAAQGYSL 453

Query: 342 ERLALFDQFPYTRHME 357
             +   + FP T H+E
Sbjct: 454 RSVQPVEMFPQTNHIE 469


>gi|331090275|ref|ZP_08339162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330401894|gb|EGG81469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 459

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 23/228 (10%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + ++++T++   +D+  E+L      L ++    SF QPN      + E 
Sbjct: 249 LHILNDSLSDVVKSDETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYET 304

Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V      I+   + +L+ G G  S VLA    +V+ VEI + +VEAA+ N   N ++N +
Sbjct: 305 VREYIGDIRDLTVFDLFSGTGTISQVLAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCE 364

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318
            +                F  L DI     +   I +DPPR G+    +  +  Y    I
Sbjct: 365 FIAGDV------------FEVLDDI---KEKPDVIILDPPRDGIHPKALPKILDYGVDRI 409

Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +YISC   SL RDL ++    +T+E++   DQF  T H+E   LL RK
Sbjct: 410 VYISCKMTSLARDLELIQQRGYTVEKMTAVDQFCETVHVETVALLTRK 457


>gi|304385359|ref|ZP_07367704.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
           DSM 20284]
 gi|304328566|gb|EFL95787.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
           DSM 20284]
          Length = 455

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 32/213 (15%)

Query: 168 DERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217
           ++RL +AG ++I+ ++         +SF Q N  +    L  +     G+ G   +L++Y
Sbjct: 258 EDRL-LAGESVIHDELLGQKFIISAHSFYQVNP-VQTEKLYQLAIEKAGLTGKETVLDVY 315

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G  SL +A+   +V  VEI K +V+ A+ N   N   NVK V   +++     + E 
Sbjct: 316 SGIGTISLAMAQAAKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFVVGKAEDQMAKWQAE- 374

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSLCRDLS 333
                        +   + VDPPR GLD+    ATV M  A   ++Y+SCNP +L RD+ 
Sbjct: 375 -----------GMQPDVVVVDPPRKGLDESVINATVAM--APKRVVYVSCNPATLVRDID 421

Query: 334 -ILSTTHTIER-LALFDQFPYTRHMECGVLLVR 364
              +  + +++ +   DQFP T H+E   ++ R
Sbjct: 422 RFQAQGYKVDQPITPVDQFPQTPHVESVTVMSR 454


>gi|293396875|ref|ZP_06641149.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Serratia odorifera DSM
           4582]
 gi|291420346|gb|EFE93601.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Serratia odorifera DSM
           4582]
          Length = 375

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 77/155 (49%), Gaps = 18/155 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  AR   R+  +EI   ++  AR + AA  +  V    + S  F  
Sbjct: 236 SMWDLFCGVGGFGLHCARAQTRLTGIEINAEAIACARQSAAALGLRQVNFQALDSTHFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
           A   E E  +L            + V+PPR G+  A    +   A  +ILY SCN  S+ 
Sbjct: 296 A---EGEVPQL------------VLVNPPRRGIGQALCDYLHRMAPDYILYSSCNAQSMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +DL++L   + IER+ LFD FP+T H E   LLVR
Sbjct: 341 KDLAMLP-DYRIERVQLFDMFPHTAHYEVLTLLVR 374


>gi|187778559|ref|ZP_02995032.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC
           15579]
 gi|187772184|gb|EDU35986.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC
           15579]
          Length = 451

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 31/237 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            ++  LH     +  + + +K +I   RDY+ E L      L ++    +F Q N+    
Sbjct: 238 EIKGILHTINDTLSDVVQVDKLEILYGRDYIIEELL----GLKFKIAPEAFFQTNS---- 289

Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              E + +  K   GD     + +LYCG G    ++A    +V+ VE+ + +V+AA  N 
Sbjct: 290 KGAEKLYSIVKDFLGDASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENA 349

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N ++N + +     +  + ++++ +                I +DPPR G+    +  
Sbjct: 350 KLNGLDNCEFIAGDVAKVIKDLKQKPDI---------------IILDPPRPGVHPVALEY 394

Query: 312 VQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           V  +    I+Y+SCNP +L  DL  ++   + +E++   D FP+T H+E  V + +K
Sbjct: 395 VVKFEPKEIIYVSCNPKTLVDDLEYLIDNGYKLEKVKGMDMFPHTPHVETVVRIAKK 451


>gi|319744421|gb|EFV96779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae
           ATCC 13813]
          Length = 452

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 165/387 (42%), Gaps = 54/387 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           QY++QL  K D +RQ ++ F+    +       I  SEP HYR + +F +   G ++   
Sbjct: 88  QYDKQLEFKTDIIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSFGGNVKAG 147

Query: 62  MFDQQTKERMRI-DYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           ++ Q T   + I D  +  SL   +IN +  E++   +L      K+  +  +  +  QA
Sbjct: 148 LYAQGTHRLIDIKDCLVQDSLTQEMINRVA-ELLGKYKLPIYNERKIAGVRTVMIRRAQA 206

Query: 118 I--VTLIY---HRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRD 165
              V LI+    RL  DD   E    +R+    +   + +            T++   ++
Sbjct: 207 SGEVQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQE 263

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
            ++E +   G +L  R    +F Q N     +   E V A       DL++ YCG G   
Sbjct: 264 SINEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCGVGTIG 319

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     V  ++I   +++ A+ N  A H+            FT       E  + +D
Sbjct: 320 LAFAGKVKSVRGMDIIPEAIQDAKEN--ALHMG-----------FTNT---HYEAGKAED 363

Query: 285 ID----IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338
           I        +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+  
Sbjct: 364 IIPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L +K
Sbjct: 424 YHVHYIQSVDMFPHTARTEAVVKLQKK 450


>gi|15605475|ref|NP_220261.1| rRNA methyltransferase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789483|ref|YP_328569.1| rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|237805093|ref|YP_002889247.1| rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|7404497|sp|P55137|Y742_CHLTR RecName: Full=Uncharacterized RNA methyltransferase CT_742;
           AltName: Full=Protein HOM1
 gi|6578112|gb|AAC68337.2| rRNA Methyltransferse [Chlamydia trachomatis D/UW-3/CX]
 gi|76168013|gb|AAX51021.1| rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|231273393|emb|CAX10308.1| rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436289|gb|ADH18463.1| rRNA methyltransferase [Chlamydia trachomatis G/9768]
 gi|296437218|gb|ADH19388.1| rRNA methyltransferase [Chlamydia trachomatis G/11222]
 gi|296438148|gb|ADH20309.1| rRNA methyltransferase [Chlamydia trachomatis G/11074]
 gi|297140649|gb|ADH97407.1| rRNA methyltransferase [Chlamydia trachomatis G/9301]
          Length = 396

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 43/255 (16%)

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
             LLD      +I   + L AR           +T       ++ ++L++ GR+ ++   
Sbjct: 169 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 223

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232
             SF QP +          L A K IQ             LL+LYCG G   ++LA +  
Sbjct: 224 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGIIGILLAPYVK 273

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +++ VE+   +V +A+ NI  N V ++++    +K+F +  R E     L   DI     
Sbjct: 274 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 321

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++ S+L    + + R+   DQ
Sbjct: 322 --VVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRRMQPIDQ 379

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E  VLL R
Sbjct: 380 FPHTNHLENIVLLER 394


>gi|311747752|ref|ZP_07721537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1]
 gi|311302702|gb|EFQ79251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1]
          Length = 468

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 99/209 (47%), Gaps = 24/209 (11%)

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
           E +T AG   I  ++E         SF Q N+    + L  +      ++GD  + +LY 
Sbjct: 271 ELVTYAGLPYIEEEMEGLKFRIGPKSFYQTNSE-QAYELYKITRDFAELKGDEIVYDLYT 329

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +  +A+   +V+ VE  + ++  A+ N   N + N        KE         E
Sbjct: 330 GTGTIANFVAKKAKQVIGVEYVEAAIADAKINSQINGIENTLFYAGDMKEILN-----DE 384

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
           F     I+ H+     I  DPPR+G+D+  V M+   A P I+Y+SCNP +  RDL++L 
Sbjct: 385 F-----IENHAAP-DVIITDPPRAGMDEKVVQMLLKLAAPKIVYVSCNPATQARDLALLG 438

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++++   D FP T H+E  VLL  K
Sbjct: 439 EKYDVQKVQPVDMFPQTYHVENVVLLTLK 467


>gi|296330132|ref|ZP_06872614.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673376|ref|YP_003865048.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152721|gb|EFG93588.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411620|gb|ADM36739.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 459

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++     
Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E                 T+ VDPPR G D+  +  +V+  P  ++Y+SCNP +L R
Sbjct: 375 WYEE------------GITADTLVVDPPRKGCDETLLRTIVEMKPKRVVYVSCNPGTLAR 422

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           DL +L    +T   +   D FP+T H+EC  +L
Sbjct: 423 DLRVLEDGGYTTLEVQPVDMFPHTNHVECVAVL 455


>gi|262190756|ref|ZP_06048984.1| RNA methyltransferase TrmA family [Vibrio cholerae CT 5369-93]
 gi|262033371|gb|EEY51881.1| RNA methyltransferase TrmA family [Vibrio cholerae CT 5369-93]
          Length = 375

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMEIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|262403007|ref|ZP_06079567.1| RNA methyltransferase TrmA family [Vibrio sp. RC586]
 gi|262350506|gb|EEY99639.1| RNA methyltransferase TrmA family [Vibrio sp. RC586]
          Length = 377

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|229159573|ref|ZP_04287587.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
 gi|228623875|gb|EEK80687.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
          Length = 459

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 166/382 (43%), Gaps = 44/382 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMNNSLEERIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    V + +    A   + G+  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGNEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL RD+  L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T H+E  V LVRK
Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459


>gi|254496451|ref|ZP_05109328.1| 23S rRNA 5-methyluridine methyltransferase [Legionella drancourtii
           LLAP12]
 gi|254354307|gb|EET12965.1| 23S rRNA 5-methyluridine methyltransferase [Legionella drancourtii
           LLAP12]
          Length = 444

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 103/228 (45%), Gaps = 18/228 (7%)

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA--GRTLIYRQIENSFTQPNAG 193
           +R++      +Y I L      +  C    +  E LT A     + Y      FTQ N+ 
Sbjct: 221 LRIQQFAEQYQYTIFLQPSGPDSVYCFYPPHASEFLTYALPDYQITYSFHPTDFTQVNSE 280

Query: 194 INVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           +N  M+   L        D+ L+L+CG GNFSL +A+   +VL VE +   VE A  N  
Sbjct: 281 LNRAMVALALQLMDLKSTDIVLDLFCGLGNFSLPMAKFCAKVLGVEGSAMMVERAYMNAK 340

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           AN+++NV     +  +  +  +  ++                + +DPPRSG  +    + 
Sbjct: 341 ANNLSNVDFYAANLDDVNEVQKLVQQ------------TCNKVLIDPPRSGALELVKQID 388

Query: 313 QAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
              P  I+Y+SCNP +L RD  IL     + + +  + D FP+T H+E
Sbjct: 389 TLNPERIVYVSCNPVTLARDTDILVNQKGYVLIKAGVMDMFPHTAHVE 436


>gi|237803172|ref|YP_002888366.1| rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274406|emb|CAX11201.1| rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
          Length = 396

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 43/255 (16%)

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
             LLD      +I   + L AR           +T       ++ ++L++ GR+ ++   
Sbjct: 169 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 223

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232
             SF QP +          L A K IQ             LL+LYCG G   ++LA +  
Sbjct: 224 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGIIGILLAPYVK 273

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +++ VE+   +V +A+ NI  N V ++++    +K+F +  R E     L   DI     
Sbjct: 274 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 321

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++ S+L    + + R+   DQ
Sbjct: 322 --VVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRRMQPIDQ 379

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E  VLL R
Sbjct: 380 FPHTNHLENIVLLER 394


>gi|154249037|ref|YP_001409862.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1]
 gi|154152973|gb|ABS60205.1| RNA methyltransferase, TrmA family [Fervidobacterium nodosum
           Rt17-B1]
          Length = 446

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 24/186 (12%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQ----GDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           +F Q N  + V M+++V   TK +      ++L+LY G G F++ LA     V+AVE + 
Sbjct: 277 AFFQNNYNVAVKMVDFV---TKNLNLTGSENILDLYAGIGTFTMRLAMLSRNVVAVESSH 333

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            SV+A + N   N++ N++       EF ++               ++     I +DPPR
Sbjct: 334 ISVKAGKANANINNLRNIRYEESDVVEFLKS---------------YTGNADIIILDPPR 378

Query: 302 SGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           SG        +++  PH I YISC+  +L RD+++L   + I  +  FD FP T H+E  
Sbjct: 379 SGAGKEVCKEILRIKPHKIAYISCDSSTLARDIALLKEDYNIIAVQPFDMFPQTYHVETV 438

Query: 360 VLLVRK 365
           VL+ RK
Sbjct: 439 VLMERK 444


>gi|229119979|ref|ZP_04249234.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
 gi|228663445|gb|EEL19030.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
          Length = 458

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAKKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|206974209|ref|ZP_03235126.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           H3081.97]
 gi|206747449|gb|EDZ58839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           H3081.97]
          Length = 459

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 42/381 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFITEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226
           + +I   + +        +F Q N    V +  E   AA       +++ YCG G   L 
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +++   ++  AR N   +   N K     ++++     +E          
Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344
              +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E +
Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP+T H+E  V LVRK
Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459


>gi|222055490|ref|YP_002537852.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32]
 gi|221564779|gb|ACM20751.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32]
          Length = 468

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 22/187 (11%)

Query: 186 SFTQPNAG----INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           SF Q N+G    I   + EW  AA  G +  +L+LYCG G  SL LAR    V  +E   
Sbjct: 296 SFFQVNSGSARIIYEKVREW--AALTGSE-RVLDLYCGIGGISLFLARQCKEVTGIEAVD 352

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A  N   N + N + +     +  + MRRE      K +D+       I ++PPR
Sbjct: 353 AAVADAERNAQLNGIGNCRFIAGDVAKLIEEMRRED-----KKVDL-------IVLNPPR 400

Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            G D+  +    A     I+Y+SC+PD+L RDL++L+   +    +   D FP T H+E 
Sbjct: 401 KGCDEQVLKQASALGPAKIIYVSCSPDTLARDLNLLAGLDYETREIQPVDMFPQTPHVEN 460

Query: 359 GVLLVRK 365
             LL +K
Sbjct: 461 VALLTKK 467


>gi|182419838|ref|ZP_02951078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
           5521]
 gi|237666723|ref|ZP_04526708.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376386|gb|EDT73968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
           5521]
 gi|237657922|gb|EEP55477.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 451

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 31/217 (14%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212
           K  +   +DY+ E L      L +     SF Q     N    E + +  +   GD    
Sbjct: 258 KVNVLYGKDYIREELL----GLEFNISPFSFFQ----TNTKGAEQLYSMVRDFMGDSENK 309

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LYCG G    ++A    +V+ +E+ + +VEAA+ N   N + N + +     E  +
Sbjct: 310 VVFDLYCGTGTIGQIVAPKAKKVIGIELIEEAVEAAKENAKLNGLENCEFLAGDVAEIIK 369

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
            ++ + +                I +DPPRSG+    +  V  +  P I+Y+SCNP +L 
Sbjct: 370 NVKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPEIIYVSCNPKTLV 414

Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
            DL +L+   + + +  + D FP T H E  V L++K
Sbjct: 415 TDLEVLTQKGYKVVQTKVKDMFPNTPHAETVVKLIKK 451


>gi|254303473|ref|ZP_04970831.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323665|gb|EDK88915.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 462

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   +++A+   +V A+EI K + E        N + N++ +          
Sbjct: 319 IIDAYSGTGTIGMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGPV------ 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330
              E+E  +L +   ++ R  TI  DPPR GL+ + +  V       ++YISCNP +  R
Sbjct: 373 ---EKELVKLIN---NNKRIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFAR 426

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ + S   + +++L   D FP T H+EC V L+ K
Sbjct: 427 DVKLFSEKGYVLKKLQAVDMFPQTSHIEC-VGLIEK 461


>gi|150005861|ref|YP_001300605.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|149934285|gb|ABR40983.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482]
          Length = 473

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 24/209 (11%)

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218
           E +   G   I+ ++E         SF Q N+G   + L  V     G+ G  L  +LY 
Sbjct: 276 EVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSG-QAYNLYKVARNFAGLTGKELVYDLYT 334

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +  ++R   +V+ +E    ++E A+ N A N ++N        K+        +E
Sbjct: 335 GTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILT-----QE 389

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILS 336
           F     I+ H  R   I  DPPR+G+ +D    ++ A P  I+Y+SCNP +  RDLS+L 
Sbjct: 390 F-----INQHG-RPDVIITDPPRAGMHNDVINTILFAEPQRIVYVSCNPATQARDLSLLD 443

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  +   D FP+T H+E  VLL ++
Sbjct: 444 AKYKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|217958023|ref|YP_002336567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH187]
 gi|229137289|ref|ZP_04265905.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
 gi|217068021|gb|ACJ82271.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH187]
 gi|228646192|gb|EEL02410.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 459

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 42/381 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFITEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226
           + +I   + +        +F Q N    V +  E   AA       +++ YCG G   L 
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +++   ++  AR N   +   N K     ++++     +E          
Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKHHGFTNTKYEAGKAEQWLPKWVKE---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344
              +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E +
Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP+T H+E  V LVRK
Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459


>gi|153801402|ref|ZP_01955988.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae MZO-3]
 gi|124123068|gb|EAY41811.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae MZO-3]
          Length = 375

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|331092292|ref|ZP_08341120.1| hypothetical protein HMPREF9477_01763 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401724|gb|EGG81303.1| hypothetical protein HMPREF9477_01763 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 554

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 10/185 (5%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N     ++ ++ L    G+ G+  + +LYCG G  SL LA+   +V  VEI   +
Sbjct: 283 SFYQVNPKQTENLYQYALEYA-GLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQA 341

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N + N +     ++E       E   N  ++ D        I VDPPR G
Sbjct: 342 IEDAKRNADINGIENAEFFVGKAEEILP----EYYENYAREHDGEKAYADVIVVDPPRKG 397

Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
            D+  +  M    P  I+Y+SC+  +L RDL  L    + ++++   D FP T H+E  V
Sbjct: 398 CDETLLRTMTDMSPERIVYVSCDSATLARDLKYLCENGYELQKVRAVDMFPNTVHVETVV 457

Query: 361 LLVRK 365
            LVRK
Sbjct: 458 KLVRK 462


>gi|121726370|ref|ZP_01679644.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V52]
 gi|121631118|gb|EAX63493.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V52]
          Length = 375

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+
Sbjct: 237 MWDLFCGVGGFALHCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                E                + V+PPR GL       ++A    HILY SCNP ++ +
Sbjct: 297 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D++ L++   I R   FD FP+T H E   LLVRK
Sbjct: 342 DIAELASYQMI-RAQWFDMFPHTNHAEVLTLLVRK 375


>gi|168333730|ref|ZP_02691983.1| RNA methyltransferase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 446

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 27/215 (12%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
           A +T     RDY+ +++      L ++    SF Q N  +   +L  +      + G   
Sbjct: 251 AEQTTTLDGRDYIMDKIG----ELTFKISLLSFFQVNP-VQTKVLYDIALGVAALTGSET 305

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G  SL LA+   RV+ VE    +V  A  N   N + NV+ V  ++++    
Sbjct: 306 VLDAYCGIGTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDV--- 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                         +   +F  + VDPPR G ++  +  +   A   ++YISC+P +L R
Sbjct: 363 --------------VLGEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLAR 408

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  +    + + ++   D FPYT H+E  VLL R
Sbjct: 409 DVKFMYENGYVVNKVQPVDMFPYTSHVETCVLLSR 443


>gi|47567252|ref|ZP_00237966.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
 gi|228913174|ref|ZP_04076813.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229042327|ref|ZP_04190077.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
 gi|47556095|gb|EAL14432.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
 gi|228726986|gb|EEL78193.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
 gi|228846579|gb|EEM91592.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 459

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 165/381 (43%), Gaps = 42/381 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226
           + +I   + +        +F Q N    V +  E   AA       +++ YCG G   L 
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +++   ++  AR N   +   N K     ++++     +E          
Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344
              +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E +
Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP+T H+E  V LVRK
Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459


>gi|282851234|ref|ZP_06260599.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           224-1]
 gi|311110290|ref|ZP_07711687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           MV-22]
 gi|282557202|gb|EFB62799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           224-1]
 gi|311065444|gb|EFQ45784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           MV-22]
          Length = 448

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ KP+V+ A  N   N +NN + V   ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E              +   IFVDPPR GL    +   V+ +P  I+YISCNP ++ R
Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVR 412

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +     +    +   D FP T H+E   +L +K
Sbjct: 413 DLQLFREQGYDFNEIDPVDMFPQTPHVEAVTVLEKK 448


>gi|281413076|ref|YP_003347155.1| RNA methyltransferase, TrmA family [Thermotoga naphthophila RKU-10]
 gi|281374179|gb|ADA67741.1| RNA methyltransferase, TrmA family [Thermotoga naphthophila RKU-10]
          Length = 439

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 21/185 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            +F Q N  I   +++ V      +QG+  +L+LY G G FS+  +    RV++VE ++ 
Sbjct: 268 TAFFQSNYSITSKLIDHVYREL-ALQGNEVVLDLYAGIGTFSVRTSFSAARVISVESSRV 326

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V+A + N   N   N++ V     +F            LK+   +S R   I +DPPRS
Sbjct: 327 AVKAGKANANINSRRNIEYVEQDVLDF------------LKN---YSGRADRIILDPPRS 371

Query: 303 GLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           G   +A   +V+  P  I+Y+SC P +L RDL +L    ++I  +  FD FP T H+E  
Sbjct: 372 GAGPEAMKEIVRLSPERIVYVSCEPSTLVRDLKVLVENGYSIVGVKPFDMFPQTYHVETA 431

Query: 360 VLLVR 364
           V LV+
Sbjct: 432 VTLVK 436


>gi|222094222|ref|YP_002528279.1| RNA methyltransferase, trma family [Bacillus cereus Q1]
 gi|221238277|gb|ACM10987.1| RNA methyltransferase, TrmA family [Bacillus cereus Q1]
          Length = 459

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 164/381 (43%), Gaps = 42/381 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +    L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFQKYMNNGLEEKILPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226
           + +I   + +        +F Q N    V +  E   AA       +++ YCG G   L 
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +++   ++  AR N   +   N K     ++++     +E          
Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344
              +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E +
Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP+T H+E  V LVRK
Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459


>gi|121586704|ref|ZP_01676488.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae
           2740-80]
 gi|147671793|ref|YP_001215150.1| 23S rRNA methyluridine methyltransferase [Vibrio cholerae O395]
 gi|153818315|ref|ZP_01970982.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae NCTC
           8457]
 gi|227812495|ref|YP_002812505.1| putative TrmA family RNA methyltransferase [Vibrio cholerae M66-2]
 gi|229505928|ref|ZP_04395437.1| RNA methyltransferase TrmA family [Vibrio cholerae BX 330286]
 gi|262169193|ref|ZP_06036886.1| RNA methyltransferase TrmA family [Vibrio cholerae RC27]
 gi|298499706|ref|ZP_07009512.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MAK
           757]
 gi|172047366|sp|A5F0U5|RUMB_VIBC3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|254766930|sp|C3LWJ3|RUMB_VIBCM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|121549132|gb|EAX59167.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae
           2740-80]
 gi|126511128|gb|EAZ73722.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae NCTC
           8457]
 gi|146314176|gb|ABQ18716.1| putative TrmA family RNA methyltransferase [Vibrio cholerae O395]
 gi|227011637|gb|ACP07848.1| putative TrmA family RNA methyltransferase [Vibrio cholerae M66-2]
 gi|227015576|gb|ACP11785.1| putative TrmA family RNA methyltransferase [Vibrio cholerae O395]
 gi|229356279|gb|EEO21197.1| RNA methyltransferase TrmA family [Vibrio cholerae BX 330286]
 gi|262022474|gb|EEY41182.1| RNA methyltransferase TrmA family [Vibrio cholerae RC27]
 gi|297541687|gb|EFH77738.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MAK
           757]
          Length = 375

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+
Sbjct: 237 MWDLFCGVGGFALHCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                E                + V+PPR GL       ++A    HILY SCNP ++ +
Sbjct: 297 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPQHILYSSCNPQTMVK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D++ L+ ++ + R+  FD FP+T H E   LLVRK
Sbjct: 342 DIAELA-SYQMSRVQWFDMFPHTDHAEVLTLLVRK 375


>gi|225019491|ref|ZP_03708683.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum
           DSM 5476]
 gi|224947712|gb|EEG28921.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum
           DSM 5476]
          Length = 467

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++LYCG G   L +A    RV+ VEI   +VE AR +   N V N + +   +KE  ++
Sbjct: 319 LVDLYCGAGTIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCADAKEAARS 378

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           + ++              R   + VDPPR G D + +  +   A   I+ ISCNP +  R
Sbjct: 379 LAQQ------------GLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAAR 426

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D  +L    + +E +A  D F  T H+EC + LV++
Sbjct: 427 DCGLLQQQGYRVEEVAAADLFSRTLHVECVISLVKE 462


>gi|42779622|ref|NP_976869.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|118476178|ref|YP_893329.1| tRNA (uracil-5-)-methyltransferase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045225|ref|ZP_03112457.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           03BB108]
 gi|225862467|ref|YP_002747845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           03BB102]
 gi|229182811|ref|ZP_04310050.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|229194804|ref|ZP_04321591.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
 gi|51316697|sp|Q73E18|Y542_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0542
 gi|42735538|gb|AAS39477.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987]
 gi|118415403|gb|ABK83822.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
 gi|196023809|gb|EDX62484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           03BB108]
 gi|225790988|gb|ACO31205.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           03BB102]
 gi|228588652|gb|EEK46683.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
 gi|228600691|gb|EEK58272.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
          Length = 459

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 164/381 (43%), Gaps = 42/381 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +    L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226
           + +I   + +        +F Q N    V +  E   AA       +++ YCG G   L 
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +++   ++  AR N   +   N K     ++++     +E          
Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344
              +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E +
Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP+T H+E  V LVRK
Sbjct: 439 QPVDMFPHTAHVENVVKLVRK 459


>gi|311029127|ref|ZP_07707217.1| putative RNA methyltransferase [Bacillus sp. m3-13]
          Length = 469

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  ++    S++ A+ N   +   N+K V   ++++   
Sbjct: 325 VVDAYCGVGTIGLWLAEGAGEVRGMDTIAESIDDAKENAKRHGYTNMKYVAGKAEKWLPR 384

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330
             +E             +R  TI VDPPR+GLD+  +  V    P + +Y+SCNP +L +
Sbjct: 385 WVKE------------GWRPDTIVVDPPRTGLDETFMKTVLDVEPKNFVYVSCNPSTLAK 432

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D+  LS  + ++ +   D FP T H+EC  LL 
Sbjct: 433 DIQFLSKKYKVDWIQPVDMFPQTAHVECCALLT 465


>gi|262066022|ref|ZP_06025634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380272|gb|EFE87790.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium
           periodonticum ATCC 33693]
          Length = 451

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271
           +++ Y G G   +++A+   +V A+EI K + E  +     N + N++ +     KE  +
Sbjct: 308 IVDAYSGTGTIGMIMAKKAKKVYAIEIVKSASEDGKRTAKENGIENIEFINGPVEKELVK 367

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329
            +      N  + ID       TI  DPPR GL+ + +  V       ++YISCNP +  
Sbjct: 368 II------NNNQKID-------TIIFDPPRKGLEASIIDTVAELNLKEVVYISCNPSTFA 414

Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           RD+ + S   + +++L   D FP T H+EC  L+ R+
Sbjct: 415 RDVKLFSEKGYVLKKLQAVDMFPQTSHIECVGLIERR 451


>gi|269120598|ref|YP_003308775.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
           33386]
 gi|268614476|gb|ACZ08844.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
           33386]
          Length = 451

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 109/218 (50%), Gaps = 29/218 (13%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
            N+ K+    +Y++E L      + ++   +SF Q N+   + +    +       GD  
Sbjct: 254 GNEHKLIYGSEYLEEELD----GIKFKIYPDSFFQINSEQTIKLYNKAMEYL----GDSE 305

Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +++ + G G   +++++   +V  +E  + SV +A++  A N++ NV+  ++   E 
Sbjct: 306 DKRIVDAFSGTGTLGMLVSKTARKVYCIESMESSVISAKHTAAENNIKNVRF-KIGKVE- 363

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
                     N+L +I + + +   I  DPPR G+D+ T+  +  +    I+YISCNP +
Sbjct: 364 ----------NKLPEI-LKNTKMDGIIFDPPRKGIDENTLKSIGKHGIERIVYISCNPST 412

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L RD+ IL+   + +E+LA  D FP T H+E   L ++
Sbjct: 413 LARDVKILTDLGYRLEKLAAVDMFPQTHHIEAVSLFLK 450


>gi|193213715|ref|YP_001999668.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327]
 gi|193087192|gb|ACF12468.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327]
          Length = 479

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 22/255 (8%)

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           ++ +TS  D  ++  +  RL + A  E  + L + +  RK     +    +  +     Y
Sbjct: 234 VNIVTSWHDAELMQALKERL-EVAMPEQQMTLLNNVTTRK---NTVATGEQEYVISGDGY 289

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
           V ERL      L +R   NSF Q N      + + ++A       D + +LYCG G  +L
Sbjct: 290 VTERLG----DLDFRISANSFFQTNTRQAETLYDQIIAVGSITPEDTVYDLYCGTGTITL 345

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LARH  + + +E+ + +V  A+ N   N ++N    +   K F  AM+   E       
Sbjct: 346 YLARHCKQAIGIEVVESAVRDAQMNAELNGLSNTVFFQADLKNF-HAMQEALE------- 397

Query: 286 DIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIE 342
                + + I  DPPR+G+   A   M++  P  I+Y+SCNPD+L RD   I +  + + 
Sbjct: 398 --PYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCNPDNLARDGKEIAARGYRMT 455

Query: 343 RLALFDQFPYTRHME 357
                D FP T H+E
Sbjct: 456 SAQPVDMFPQTNHIE 470


>gi|218132971|ref|ZP_03461775.1| hypothetical protein BACPEC_00832 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991844|gb|EEC57848.1| hypothetical protein BACPEC_00832 [Bacteroides pectinophilus ATCC
           43243]
          Length = 405

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 28/198 (14%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-------GDLLELYCGNGNFSLVLARH 230
           + YR    SF Q NA      ++  L  TK I+         +++ Y G G   + +A H
Sbjct: 226 ITYRISPKSFYQVNA------VQTELLYTKAIELARLTGSETVIDAYSGIGTIGMTVAGH 279

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V++VE    +V+ AR N  AN+++N+ I    +  F   MRR  + N   D+     
Sbjct: 280 VRKVISVETNTDAVKDARRNAKANNISNIDIYADDAGRF---MRRMADNNETCDV----- 331

Query: 291 RFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALF 347
               IF+DPPR+G D   +  +++  P  ++YISC P++L RDL++L+   + +  +   
Sbjct: 332 ----IFMDPPRAGSDKVFLNSILKLMPSKVIYISCCPETLARDLAVLARRAYRVAAIQPV 387

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP+T  +E  V L R+
Sbjct: 388 DMFPWTSGIETIVCLERR 405


>gi|220934276|ref|YP_002513175.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995586|gb|ACL72188.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 446

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 23/186 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  IN  M+   +   + G +  +L+L+CG GNFSL LAR    V+ VE     V 
Sbjct: 275 FVQVNRDINRAMVPRAIELLEVGPEHRVLDLFCGLGNFSLPLARRAGHVVGVEGEAVMVA 334

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N   N + NV        EF  A    R+   + D       F  I +DPPR+G  
Sbjct: 335 RARDNAEHNGIRNV--------EFHAADLAARD---VIDAPWARAGFDRILLDPPRAG-- 381

Query: 306 DATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358
               G+++       P I+Y+SCNP +L RD   L  S  + +E   + D FP+T H+E 
Sbjct: 382 --AAGVMKLLGRLNVPRIVYVSCNPATLARDADTLVHSLGYRLEAAGVMDMFPHTAHVES 439

Query: 359 GVLLVR 364
             + V+
Sbjct: 440 MAVFVK 445


>gi|269123421|ref|YP_003305998.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis
           DSM 12112]
 gi|268314747|gb|ACZ01121.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis
           DSM 12112]
          Length = 466

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 15/158 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G    +++++   V  +E+ + +V  A  N   N + N K +          
Sbjct: 321 VFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKANENAIKNGITNAKFIAGDV------ 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                 F +L++ D  + +   + +DPPRSG+ + T+  +  Y   +I+Y+SCNP +L  
Sbjct: 375 ------FEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYIIYVSCNPKTLAE 428

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL I    ++ ++R+   D F YT H+EC VL+ R  S
Sbjct: 429 DLKIFEYNSYILKRVVCVDMFGYTPHVECIVLIQRVKS 466


>gi|90579648|ref|ZP_01235457.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
 gi|90439222|gb|EAS64404.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
          Length = 384

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 18/153 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F+L  A   + V  +EI   ++E+A+++     V N++   + S  F+Q
Sbjct: 243 SMWDLFCGVGGFALHCAEEVEHVTGIEIEPEAIESAKHSAEIMGVTNLRFAALDSTSFSQ 302

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
           +     E                + V+PPR G+ +     +   A  HI+Y SCNP +L 
Sbjct: 303 SNESAPEL---------------VLVNPPRRGIGEQLCQQLNDFAPKHIIYSSCNPYTLE 347

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +DL+ L T + + +L  FD FP+T H+E  VLL
Sbjct: 348 QDLARL-TGYKVIKLQWFDMFPHTEHVEVMVLL 379


>gi|242398439|ref|YP_002993863.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM
           739]
 gi|242264832|gb|ACS89514.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM
           739]
          Length = 419

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 22/175 (12%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N+   V++++ V    +G +  +L+LY G G F + LAR   +V  +E+   +V
Sbjct: 254 NSFFQTNSYQAVNLVKKVGDFVEGEK--VLDLYSGVGTFGIYLARRGFKVEGIEVNPFAV 311

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E A  N   N VN          EF     RE     ++D+ ++     T+ VDPPR+GL
Sbjct: 312 EMANRNARINEVN---------AEFKVGEDRE-----VRDLGVYD----TLIVDPPRAGL 353

Query: 305 DDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
               +  +   P   ++Y+SCNP +   +L  L   + IE +   D FP+T H+E
Sbjct: 354 HPKLIKKLLKDPPETLVYVSCNPRTFSENLKKLKEGYAIEEIVALDMFPHTPHIE 408


>gi|239825905|ref|YP_002948529.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70]
 gi|239806198|gb|ACS23263.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70]
          Length = 459

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VE+   ++E A+ N   N + NV+    +  E    
Sbjct: 314 VIDAYCGIGTISLFLAKKAKKVYGVEVVPEAIEDAKRNAELNGITNVE---FAIGEAEAV 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           + +  E            R   I VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 371 IPKWYE---------QGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLAR 421

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL IL      TIE +   D FP+T H+EC   LV K
Sbjct: 422 DLRILEDGGYQTIE-VQPVDMFPHTAHVECVSRLVLK 457


>gi|291537472|emb|CBL10584.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis
           M50/1]
          Length = 473

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 120/272 (44%), Gaps = 38/272 (13%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           Q++ L+ +++ A++     +L ++ +      L+  LH +   +    +   T I   +D
Sbjct: 223 QMEELSGENESALLEGWVKKLCEEKYDGV---LKGILHTKNDSVADTIKNEGTDILFGQD 279

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLE---------L 216
           +  E L      L ++    SF Q N+       E +    +   GD L+         L
Sbjct: 280 FFYEELL----GLKFKITPFSFFQTNS----LGAEVLYQTAREFIGDALDDEANQTVFDL 331

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  + +L+    +V+ VEI + +V AAR N A N + N         EF       
Sbjct: 332 YSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNC--------EFIAG---- 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
              + LK ID    +   I +DPPR G+    +  +  Y  P ++YISC P SL RDL +
Sbjct: 380 ---DVLKVIDTIGEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMVYISCKPTSLARDLEV 436

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           L    + ++++   D FP T ++E  VLL  K
Sbjct: 437 LQARGYQVKKVQCVDMFPSTGNVETVVLLSHK 468


>gi|229101137|ref|ZP_04231903.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
 gi|228682265|gb|EEL36376.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
          Length = 465

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G DDA +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GIIAD---------TMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|110598563|ref|ZP_01386831.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM
           13031]
 gi|110339797|gb|EAT58304.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM
           13031]
          Length = 480

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 169/397 (42%), Gaps = 69/397 (17%)

Query: 9   QYEQQLAEKVDRLR---QMMLAFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           +YE Q+A K  +++   + + +F  P +   +  + P+HYR + EF        + +++ 
Sbjct: 94  RYEAQIAYKEKKVKDALEHLGSFSNPPVSPVLAAASPVHYRNKIEFSC----SSMRYLLP 149

Query: 64  DQQTKERMR------IDYFMPGSL----------LINALMIEMMATIR-------LEPL- 99
           ++ ++E +       + +  PG+           L   LM  ++   R       LEP  
Sbjct: 150 EELSQEELERPKNFALGFHTPGNFEKVIDIDYCYLATELMNRVLKLTREFALANNLEPYG 209

Query: 100 LRAKLFQIDYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI--QLIG 153
           +RA    +  L    +    + +V L+     +   ++    L+ AL   K  +   +  
Sbjct: 210 VRAHTGFLRNLVVRFSEDQRELMVNLVTSWYDEKLMQQYNAALQSALAGEKVTVVNNVTS 269

Query: 154 RANKTKICLDRDYVDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAA 205
           R N           +E   ++G  +I        +R   NSF Q N+     +L   +  
Sbjct: 270 RKNGVATG------EEEFLLSGTGIITERLGELDFRISANSFFQTNSR-QAEVLYNAILD 322

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             G+  D  + +LYCG G  +L +A+H    + +E+ + S+  AR N A N V N    +
Sbjct: 323 VAGLNEDDTVYDLYCGTGTITLYMAKHCRSAVGLEVVESSINDARSNAALNGVENADFYQ 382

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYI 321
           +  K+F            L  ++ H      I  DPPR+G+   A   M++  P  I+Y+
Sbjct: 383 VDLKDFHAI---------LDKLESHGAP-GVIITDPPRAGMHPKALETMLRFRPRRIVYV 432

Query: 322 SCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357
           SCNP SL RD   I    +T++ +   D FP+T H+E
Sbjct: 433 SCNPASLARDGKEIALQGYTLKSVQPVDMFPHTAHIE 469


>gi|229171165|ref|ZP_04298759.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
 gi|228612343|gb|EEK69571.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
          Length = 465

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G DDA +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GIIAD---------TMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|166154084|ref|YP_001654202.1| rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|166154959|ref|YP_001653214.1| rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335289|ref|ZP_07223533.1| rRNA methyltransferase [Chlamydia trachomatis L2tet1]
 gi|165930072|emb|CAP03555.1| rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|165930947|emb|CAP06509.1| rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 396

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 43/255 (16%)

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
             LLD      +I   + L AR           +T       ++ ++L++ GR+ ++   
Sbjct: 169 QSLLDSGLPITSIFWEEKLSARNSPTTF-----RTTHLYGAPFLKQQLSIDGRSSLFHIR 223

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHFD 232
             SF QP +          L A K IQ             LL+LYCG G   ++LA +  
Sbjct: 224 PRSFFQPQS----------LQAEKIIQTIKEFIDPCGEETLLDLYCGAGTIGILLAPYVK 273

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +++ VE+   +V +A+ NI  N V ++++    +K+F +  R E     L   DI     
Sbjct: 274 KIIGVELVPDAVASAQENIQLNSV-DMEVFLEDAKQFCK--RNE----NLPSPDI----- 321

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++ S+L    + +  +   DQ
Sbjct: 322 --VVIDPPRCGMQNKALKYLLRMAPKKIVYVSCNPLTQIQECSVLVEQGYQLRHMQPIDQ 379

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E  VLL R
Sbjct: 380 FPHTNHLENIVLLER 394


>gi|50302631|ref|XP_451251.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640382|emb|CAH02839.1| KLLA0A05665p [Kluyveromyces lactis]
          Length = 578

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 21/160 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  ++  DRV+ VE++  SV  A  N  AN V N K +          
Sbjct: 431 LVDAYCGSGLFSITSSKGVDRVIGVEVSADSVAFAERNAKANGVENCKFI---------V 481

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
            + E+ F     ID    R  ++ +DPPR G DD  +  +  Y    I+YISCN  S  R
Sbjct: 482 GKAEKIFG---SIDTPCDR-TSVILDPPRKGCDDIFMKQLAEYNPARIVYISCNVHSQAR 537

Query: 331 DLS-ILSTT-----HTIERLALFDQFPYTRHMECGVLLVR 364
           D+   L  T     + IE L  FD FP T H+E   +L R
Sbjct: 538 DVEYFLKETENGKHYKIESLRGFDFFPQTHHVESVCVLSR 577


>gi|315303539|ref|ZP_07874104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
           F6-596]
 gi|313628091|gb|EFR96659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
           F6-596]
          Length = 459

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++    S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQA-YPHILYISCNPDSLCR 330
            + E  F +        ++   + VDPPRSG D   +G ++QA    ++Y+SCNP +L R
Sbjct: 366 GKAEEVFPKWMK---EGFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLAR 422

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL++L+  + +  +   D FP T H+E  VLL
Sbjct: 423 DLALLAKKYRVRYMQPVDMFPQTAHVETVVLL 454


>gi|289435036|ref|YP_003464908.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171280|emb|CBH27822.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 459

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++    S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQA-YPHILYISCNPDSLCR 330
            + E  F +        ++   + VDPPRSG D   +G ++QA    ++Y+SCNP +L R
Sbjct: 366 GKAEEVFPKWMK---EGFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLAR 422

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL++L+  + +  +   D FP T H+E  VLL
Sbjct: 423 DLALLAKKYRVRYMQPVDMFPQTAHVETVVLL 454


>gi|154492137|ref|ZP_02031763.1| hypothetical protein PARMER_01769 [Parabacteroides merdae ATCC
           43184]
 gi|154087362|gb|EDN86407.1| hypothetical protein PARMER_01769 [Parabacteroides merdae ATCC
           43184]
          Length = 474

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 18/182 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+    + L  V     G+ G+  + +LY G G  +  ++R   +V+ +E    +
Sbjct: 299 SFYQTNSE-QAYELYKVAREFAGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEA 357

Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +E A+ N + N + N        K+  TQ             I+ H  R   I  DPPR+
Sbjct: 358 IEDAKVNSSLNKIENTLFYAGDMKDILTQDF-----------INQHG-RPDVIITDPPRA 405

Query: 303 GL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           G+ DD    ++ A P  I+Y+SCNP +  RDLS+LS  + ++++   D FP+T H+E  V
Sbjct: 406 GMHDDVINTILFAEPERIVYVSCNPATQARDLSLLSVKYAVKKVQPVDMFPHTHHVENVV 465

Query: 361 LL 362
           LL
Sbjct: 466 LL 467


>gi|77407679|ref|ZP_00784434.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
 gi|77173678|gb|EAO76792.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
          Length = 451

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 161/386 (41%), Gaps = 52/386 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           QY++QL  K D +RQ ++ F+    +       I  SEP HYR + +F +   G ++   
Sbjct: 88  QYDKQLEFKTDIIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSFGGNVKAG 147

Query: 62  MFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           ++ Q T   + I   +    L   ++    E++   +L      K+  +  +  +  QA 
Sbjct: 148 LYAQGTHRLIDIKDCLVQDRLTQEMINRVAELLGKYKLPIYNERKIAGVRTVMIRRAQAS 207

Query: 119 --VTLIY---HRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDY 166
             V LI+    RL  DD   E    +R+    +   + +            T++   ++ 
Sbjct: 208 GEVQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQES 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           ++E +   G +L  R    +F Q N     +   E V A       DL++ YCG G   L
Sbjct: 265 INEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCGVGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   +++ A+ N  A H+            FT       E  + +DI
Sbjct: 321 AFAGKVKSVRGMDIIPEAIQDAKEN--ALHMG-----------FTNT---HYEAGKAEDI 364

Query: 286 D----IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+  +
Sbjct: 365 IPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L RK
Sbjct: 425 HVHYIQSVDMFPHTARTEAVVKLQRK 450


>gi|229514343|ref|ZP_04403804.1| RNA methyltransferase TrmA family [Vibrio cholerae TMA 21]
 gi|229348323|gb|EEO13281.1| RNA methyltransferase TrmA family [Vibrio cholerae TMA 21]
          Length = 375

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPQHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|229154085|ref|ZP_04282210.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|228629365|gb|EEK86067.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
          Length = 465

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLSTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|170754817|ref|YP_001783005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B1 str. Okra]
 gi|169120029|gb|ACA43865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B1 str. Okra]
          Length = 461

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E    
Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV--- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    + D+     +   + VDPPR G +   +  + A     I+Y+SC+P +L R
Sbjct: 373 ---------IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLAR 423

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL IL+   +  + +   D FP T H+E  VL+ R
Sbjct: 424 DLGILNGLGYETKEVQTVDMFPQTSHVETIVLIQR 458


>gi|330897094|gb|EGH28572.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 230

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 21/184 (11%)

Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
             F Q NA +N  M+E    W LA  K  +  +++L+CG GNF+L LA     V+AVE  
Sbjct: 58  GDFIQVNAAVNTAMIEQAMQW-LAPAKDER--VMDLFCGLGNFALPLAGLAREVVAVEGV 114

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              VE A  N  +N ++NV+  +    + +Q          L  +D  +  F  + +DPP
Sbjct: 115 ATMVERAAVNAMSNDLHNVQFFQ---ADLSQP---------LTHVDWAAEGFSAVLLDPP 162

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358
           R G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP T H+E 
Sbjct: 163 RDGAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEA 222

Query: 359 GVLL 362
             L 
Sbjct: 223 MALF 226


>gi|229089447|ref|ZP_04220718.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
 gi|228693924|gb|EEL47616.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
          Length = 465

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|118476081|ref|YP_893232.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|229182714|ref|ZP_04309955.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|118415306|gb|ABK83725.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
 gi|228600799|gb|EEK58378.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
          Length = 465

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|228983573|ref|ZP_04143778.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228776169|gb|EEM24530.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 458

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLSTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|283796109|ref|ZP_06345262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
 gi|291076323|gb|EFE13687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
          Length = 560

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 29/252 (11%)

Query: 129 DAWRECAIRLR------DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           + WRE  + L         LH +   +    +   T+I   +DY  E L      L +R 
Sbjct: 241 NQWREKILSLSLEGTLAGILHTKNDTLADAVKDEGTEILFGQDYFYEELL----GLKFRI 296

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAK 241
              SF Q N+     + E       G+ G ++ +LY G G  + +LA    +V+ VEI +
Sbjct: 297 SPFSFFQTNSLGAEVLYEKTREYVGGVDGKVVFDLYSGTGTIAQILAPVAQKVVGVEIVE 356

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +VEA+R N   N ++N + +                 + LK +   + +   I +DPPR
Sbjct: 357 EAVEASRVNAERNGLSNCEFIAG---------------DVLKVVGELTDKPDLIVLDPPR 401

Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            G+    +  +  +    ++Y+SC P SL RDL IL+   + +ER    D FP T ++E 
Sbjct: 402 DGIHPKAIEKIIDFGVERMVYVSCKPTSLARDLEILTARGYAVERACCVDMFPGTGNVET 461

Query: 359 GVLLVRKPSGWH 370
            VLL +  +  H
Sbjct: 462 VVLLSKLNTKQH 473


>gi|254224762|ref|ZP_04918378.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V51]
 gi|125622825|gb|EAZ51143.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V51]
          Length = 377

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|149910150|ref|ZP_01898796.1| RNA methyltransferase, TrmA family [Moritella sp. PE36]
 gi|149806736|gb|EDM66700.1| RNA methyltransferase, TrmA family [Moritella sp. PE36]
          Length = 444

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 19/185 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            +F Q N  +N  M++  +   +    D +L+L+CG GNFSL LAR    V+ VE     
Sbjct: 273 GNFIQVNPVVNNQMVKQAIDWLELTPEDRVLDLFCGGGNFSLPLARLCHSVVGVEGVDGM 332

Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           V  A+ N  AN+V N +  +   S +F++    +  F++             + +DP R+
Sbjct: 333 VRQAQANAIANNVTNAQFYQADLSSDFSKLPWAKTSFDK-------------VLLDPARA 379

Query: 303 GLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHMECG 359
           G  + TV  +       I+Y+SCNP +L RD  +L   H  + RL + D FP T H+E  
Sbjct: 380 GAAE-TVQYLHKLKVKRIVYVSCNPATLARDSKLLMEKHYKLTRLGMIDMFPQTGHVESM 438

Query: 360 VLLVR 364
            L  R
Sbjct: 439 ALFER 443


>gi|228925576|ref|ZP_04088665.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228834054|gb|EEM79602.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 465

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|229137158|ref|ZP_04265777.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
 gi|228646330|gb|EEL02545.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 459

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|229194707|ref|ZP_04321500.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
 gi|228588810|gb|EEK46835.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
          Length = 458

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|196040233|ref|ZP_03107535.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99]
 gi|196029088|gb|EDX67693.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99]
          Length = 458

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|164686694|ref|ZP_02210722.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM
           16795]
 gi|164604084|gb|EDQ97549.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM
           16795]
          Length = 466

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 15/156 (9%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A  G    + ++YCG G  SL LA+   +V  +EI + +++ A+ N   N+++NV+    
Sbjct: 314 ANLGENDTVFDIYCGIGTISLFLAQKAKKVYGIEIVEDAIKDAKRNAKINNMDNVEFYVG 373

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYIS 322
            ++E    M +E +            R   + VDPPR G D+  +  +V   P  ++Y+S
Sbjct: 374 KAEEVVPKMYKEGK------------RANVVVVDPPRKGCDEKVLDTIVSMEPDRVVYVS 421

Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           CNP +L RDL+ L+   +    +   D FP++ H+E
Sbjct: 422 CNPSTLARDLAYLNERGYKCHEIQPVDMFPHSVHVE 457


>gi|326563434|gb|EGE13699.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           12P80B1]
          Length = 497

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141
           + AL+ ++ A   + P L   + Q       S +++  ++ H + LDD   E   +LR  
Sbjct: 209 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 264

Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190
             AR +Q+ L  +   +   +D  D     LTV     ++  + N           FTQ 
Sbjct: 265 FAARNWQLFLQPKGADSVHRIDTEDARPTSLTVPPTGGLFYHLPNFELTYEFSPLDFTQV 324

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246
           N  +N  M++   +     +G+ +L+L+CG GNFSLVLAR       V+ VE ++   E 
Sbjct: 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 384

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N  AN + + +     +K+ TQ +  +            + RF  + +DPPRSG  +
Sbjct: 385 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 434

Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
                V AY        I+Y+SCNP +L RD  +++   + +    + D F +T H+E
Sbjct: 435 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 487


>gi|224476953|ref|YP_002634559.1| putative RNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421560|emb|CAL28374.1| putative RNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 453

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
           ++GR +KT     +D +++ L     ++ ++  + SF Q N+   V +    L   + + 
Sbjct: 254 IMGRHSKT--LFGKDEIEDDLD----SVEFKISDQSFYQINSEQTVKLYNKALEYAQ-LN 306

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           GD  +L+ YCG G   L +A     V  VE+   ++E A+ N   N  NN   V   ++E
Sbjct: 307 GDETVLDTYCGIGTIGLYMAEKAKHVYGVEVVPAAIEDAKQNAELNSFNNTTFVCGKAEE 366

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326
                + +              +   + VDPPR G D+  +  +++  P  I+YISCNP 
Sbjct: 367 VIMQWKAD------------GIQPDVVMVDPPRKGCDEQFLKTLLELNPKRIVYISCNPS 414

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD  IL+  + ++ +   D FP T H+E   L   K
Sbjct: 415 TQQRDAGILTEQYQLKEITPVDMFPQTTHIETVALFEHK 453


>gi|195614602|gb|ACG29131.1| hypothetical protein [Zea mays]
          Length = 558

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 34/215 (15%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           Y    +T   R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG G
Sbjct: 357 YGKPNITEMLRGLAFQISANSFFQTNTK-QADVLYKLIEDSAGLKGDGSEIVLDLFCGTG 415

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LAR    +   E+   ++E AR N   N +NN   V+    +  ++  +E     
Sbjct: 416 TIGLTLARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFVQGDLNKINESFGKE----- 470

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338
               DI       I  DP R G+    +     V+A P I+Y+SCNP +  RDL  L   
Sbjct: 471 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 520

Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362
           H +E   L            D FP+T H+EC  LL
Sbjct: 521 HGVEEKDLRGFYELKSVIPVDMFPHTPHIECVCLL 555


>gi|153212411|ref|ZP_01948193.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae 1587]
 gi|124116619|gb|EAY35439.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae 1587]
          Length = 375

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+
Sbjct: 237 MWDLFCGVGGFALHCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLNFAALDSAKFSQS 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                E                + V+PPR GL       ++A    HILY SCNP ++ +
Sbjct: 297 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D++ L++   I R+  FD FP+T H E   LLVRK
Sbjct: 342 DIAELASYQMI-RVQWFDMFPHTDHAEVLTLLVRK 375


>gi|229826831|ref|ZP_04452900.1| hypothetical protein GCWU000182_02210 [Abiotrophia defectiva ATCC
           49176]
 gi|229788986|gb|EEP25100.1| hypothetical protein GCWU000182_02210 [Abiotrophia defectiva ATCC
           49176]
          Length = 467

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 99/229 (43%), Gaps = 38/229 (16%)

Query: 158 TKICLDRD-------YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV 202
           T IC++ +       + DE   + G   I   IE+        SF Q N      +    
Sbjct: 254 TSICVNINKKITNVIFGDELKCIYGEPYIVDMIEDIKFKISPFSFYQVNPAQTRKLYGKA 313

Query: 203 LAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L    G+ G+  + +LYCG G  SL LA+    V  VEI   +VE A+ N   N + N  
Sbjct: 314 LEFA-GLTGEEVVWDLYCGIGTISLFLAKKAKEVYGVEIVPAAVENAKENAKLNGIENA- 371

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318
                   +    + E E  +L   D+       I VDPPR G D+  +  +  Y    +
Sbjct: 372 --------YFTVGKAEDEAKKLPKPDV-------IVVDPPRKGCDEKLLETIMNYKPERV 416

Query: 319 LYISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +Y+SC+P +L RDL +L     + +E +   DQF    H+E   L+ RK
Sbjct: 417 VYVSCDPATLARDLKVLCGDGGYKLEEVQAVDQFSRGVHVESVCLMTRK 465


>gi|228906231|ref|ZP_04070118.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           200]
 gi|228853387|gb|EEM98157.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           200]
          Length = 459

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 166/382 (43%), Gaps = 44/382 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +++      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    V + +    A   + G+  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGNEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL RD+  L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T H+E  V LVRK
Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459


>gi|152974152|ref|YP_001373669.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022904|gb|ABS20674.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH
           391-98]
          Length = 458

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N   N+        M++ EF   
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNN--------MTNAEFAVG 366

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                  N  K+  I      TI VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 367 EAEVVIPNWYKEGVIAD----TIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|324324344|gb|ADY19604.1| RNA methyltransferase, TrmA family protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 459

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|168178950|ref|ZP_02613614.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
 gi|182670032|gb|EDT82008.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
          Length = 461

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E    
Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV--- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    + D+     + + + VDPPR G +   +  + A     I+Y+SC+P +L R
Sbjct: 373 ---------IPDLIDKGIKAEVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLAR 423

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL IL+   +  + +   D FP T H+E  VL+ R
Sbjct: 424 DLGILNGLGYETKEVQPVDMFPQTSHVETIVLIQR 458


>gi|52144916|ref|YP_081914.1| RNA methyltransferase [Bacillus cereus E33L]
 gi|51978385|gb|AAU19935.1| RNA methyltransferase protein, trmA family (tRNA
           (uracil-5-)-methyltransferase) [Bacillus cereus E33L]
          Length = 458

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|312144153|ref|YP_003995599.1| RNA methyltransferase, TrmA family [Halanaerobium sp.
           'sapolanicus']
 gi|311904804|gb|ADQ15245.1| RNA methyltransferase, TrmA family [Halanaerobium sp.
           'sapolanicus']
          Length = 456

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 18/160 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFTQ 271
           +++ + G G+ +L +A   ++V AVE  KP+V+  + N A N + N+K +  +   E  +
Sbjct: 309 IVDAFSGTGSIALYIAEKAEKVFAVESLKPAVKDGKRNAALNKIKNIKFINGLVEDELAK 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
            +  E+       ID       +I  DPPR GL + T+ ++       ++YISCNP +  
Sbjct: 369 ILAEEK-------ID-------SIIFDPPRKGLAEKTIDLLNNLEIEKVIYISCNPATQA 414

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL-VRKPSG 368
           RDL  L   + +  +   D FP T H+E   LL ++  SG
Sbjct: 415 RDLKKLKGKYRLIEIQGVDMFPNTYHIESVALLKLKNKSG 454


>gi|196045238|ref|ZP_03112470.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108]
 gi|225862370|ref|YP_002747748.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102]
 gi|196023822|gb|EDX62497.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108]
 gi|225789520|gb|ACO29737.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102]
          Length = 458

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|116627288|ref|YP_819907.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
           LMD-9]
 gi|116100565|gb|ABJ65711.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           thermophilus LMD-9]
          Length = 439

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 158/388 (40%), Gaps = 56/388 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61
           +Y++QL  K D L Q +  F+  N + +         +P HYR + +F I   G  +   
Sbjct: 73  RYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSFGGSVKAG 132

Query: 62  MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102
           +F + +   + ID  +    L  A+M                   I  + T+ +   L +
Sbjct: 133 LFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVMIRRALGS 192

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              Q+ ++TS +  ++  L+    L  ++ E      +  +++  +I       +T+I  
Sbjct: 193 NQVQLIFVTS-NPVSLTKLVKELTL--SYPEIVTVAVNYNYSKSSEI----YGQETEIIW 245

Query: 163 DRDYVDERL---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
            +D + E +     A     + Q+    T+   G  V  LE   +        L++ YCG
Sbjct: 246 GQDTIQEEVLDYNFALSPRAFYQLNPKQTEVLYGQAVEALEVDKSE------HLIDAYCG 299

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A+    +  ++I   ++E AR N  +  ++N       +++      +E   
Sbjct: 300 VGTIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE--- 356

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                     YR   + VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  L+ 
Sbjct: 357 ---------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAK 407

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L +K
Sbjct: 408 VYDVNYIQSVDMFPHTARTEAVVKLTKK 435


>gi|238917477|ref|YP_002930994.1| hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750]
 gi|238872837|gb|ACR72547.1| Hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750]
          Length = 470

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 30/220 (13%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINV---HMLEWVLAATKGIQGD 212
           KT++    DY++E L      L ++    SF Q N+ G  V      E+VL+   G   D
Sbjct: 270 KTELLYGHDYIEEELL----GLRFKITPFSFFQTNSLGAEVLYSKAREYVLSGGFGDVAD 325

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G  + +L+    +V+ VEI   +VEAA+ N A N + N + +      
Sbjct: 326 SKPVIYDLYTGTGTIAQMLSPVASKVIGVEIVAEAVEAAKKNAAQNGLTNCEFIAD---- 381

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326
                      + LK +D    +   I +DPPR G+    +  +  Y    ++YISC P 
Sbjct: 382 -----------DVLKALDNIEIKPDFIVLDPPRDGIHPKALEKIIDYGVDRMVYISCKPT 430

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           SL RDL  L    + +E+    D FP T H+E   LL RK
Sbjct: 431 SLARDLVTLQERGYKVEKCCCVDMFPNTGHVESVCLLSRK 470


>gi|204928019|ref|ZP_03219219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204322341|gb|EDZ07538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 431

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEVVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMQHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|206974173|ref|ZP_03235090.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97]
 gi|217957891|ref|YP_002336435.1| RNA methyltransferase, TrmA family [Bacillus cereus AH187]
 gi|222094090|ref|YP_002528147.1| RNA methyltransferase protein, trma family (tRNA
           (uracil-5-)-methyltransferase) [Bacillus cereus Q1]
 gi|206747413|gb|EDZ58803.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97]
 gi|217063544|gb|ACJ77794.1| RNA methyltransferase, TrmA family [Bacillus cereus AH187]
 gi|221238145|gb|ACM10855.1| RNA methyltransferase protein, trmA family (tRNA
           (uracil-5-)-methyltransferase) [Bacillus cereus Q1]
          Length = 458

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|228931823|ref|ZP_04094719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228827803|gb|EEM73541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 458

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|168236003|ref|ZP_02661061.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194733918|ref|YP_002115909.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194709420|gb|ACF88641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290826|gb|EDY30180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 431

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 27/187 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE    
Sbjct: 262 FIQVNEVVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVPA 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 319 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 363

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E
Sbjct: 364 ARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLE 423

Query: 358 CGVLLVR 364
             VL  R
Sbjct: 424 SMVLFER 430


>gi|196034748|ref|ZP_03102156.1| RNA methyltransferase, TrmA family [Bacillus cereus W]
 gi|218901523|ref|YP_002449357.1| RNA methyltransferase, TrmA family [Bacillus cereus AH820]
 gi|228944128|ref|ZP_04106507.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|195992791|gb|EDX56751.1| RNA methyltransferase, TrmA family [Bacillus cereus W]
 gi|218536367|gb|ACK88765.1| RNA methyltransferase, TrmA family [Bacillus cereus AH820]
 gi|228815517|gb|EEM61759.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 458

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|126701016|ref|YP_001089913.1| putative RNA methyltransferase [Clostridium difficile 630]
 gi|115252453|emb|CAJ70296.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Clostridium
           difficile]
          Length = 454

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    
Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPK 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M RE +   +            + VDPPR G D+  +  +V   P  I+Y+SCNP +L R
Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLAR 416

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365
           DL  L+  H  + +     D FP++ H+E  VLL R+
Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETCVLLQRR 452


>gi|55822353|ref|YP_140794.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus
           CNRZ1066]
 gi|55738338|gb|AAV61979.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
           CNRZ1066]
          Length = 454

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 158/388 (40%), Gaps = 56/388 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61
           +Y++QL  K D L Q +  F+  N + +         +P HYR + +F I   G  +   
Sbjct: 88  RYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSFGGSVKAG 147

Query: 62  MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102
           +F + +   + ID  +    L  A+M                   I  + T+ +   L +
Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVMIRRALGS 207

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              Q+ ++TS +  ++  L+    L  ++ E      +  +++  +I       +T+I  
Sbjct: 208 NQVQLIFVTS-NPVSLTKLVKELTL--SYPEIVTVAVNYNYSKSSEIY----GQETEIIW 260

Query: 163 DRDYVDERL---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
            +D + E +     A     + Q+    T+   G  V  LE   +        L++ YCG
Sbjct: 261 GQDTIQEEVLDYNFALSPRAFYQLNPKQTEVLYGQAVEALEVDKSE------HLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A+    +  ++I   ++E AR N  +  ++N       +++      +E   
Sbjct: 315 VGTIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE--- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                     YR   + VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  L+ 
Sbjct: 372 ---------GYRADALIVDPPRTGLDSKLLKTILKYTPKKMVYVSCNVSTLARDLVSLAK 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L +K
Sbjct: 423 VYDVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|146295523|ref|YP_001179294.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409099|gb|ABP66103.1| 23S rRNA m(5)U-1939 methyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 452

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 24/207 (11%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           DE + + G + I  +I N        SF Q N+     +   V+   + I  +++ ++Y 
Sbjct: 252 DEDILIWGSSTIKDRIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIVFDVYS 311

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  S+ +A    +V  +EI + +VE A+ +   N ++N++ +           R E E
Sbjct: 312 GIGTISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFI---------CGRAEIE 362

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335
             +L    I     + + +DPPRSG +   +  +     P+I+Y+SCNP +L RD SIL 
Sbjct: 363 IPKLLKNGIIP---QAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILF 419

Query: 336 STTHTIERLALFDQFPYTRHMECGVLL 362
           S  + I  +   D FP T H+EC VL+
Sbjct: 420 SNGYEILEVQPVDMFPQTFHVECVVLM 446


>gi|49480082|ref|YP_034651.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|301052046|ref|YP_003790257.1| TrmA family RNA methyltransferase [Bacillus anthracis CI]
 gi|49331638|gb|AAT62284.1| RNA methyltransferase protein, trmA family (tRNA
           (uracil-5-)-methyltransferase, TrmA) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|300374215|gb|ADK03119.1| RNA methyltransferase protein, trmA family [Bacillus cereus biovar
           anthracis str. CI]
          Length = 458

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|167750213|ref|ZP_02422340.1| hypothetical protein EUBSIR_01187 [Eubacterium siraeum DSM 15702]
 gi|167656775|gb|EDS00905.1| hypothetical protein EUBSIR_01187 [Eubacterium siraeum DSM 15702]
          Length = 383

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 16/190 (8%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
           +R   +SF Q N      + ++ + A K  + D LL+ Y G G   ++ + +  +V  +E
Sbjct: 204 FRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIGTIGIIASDYVKQVQGIE 263

Query: 239 IAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
               +V  A  N   N +  N+   R  + EF +   +         +  H   +  + +
Sbjct: 264 YNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKAK---------LGTH---YDAVIL 311

Query: 298 DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355
           DP R+G D   +  +V+  P  I+YISCNP +  RDL  L+  +T+  +  FD FP+TRH
Sbjct: 312 DPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKKYTVTDIQPFDMFPHTRH 371

Query: 356 MECGVLLVRK 365
           +EC V + RK
Sbjct: 372 VECVVSMSRK 381


>gi|238925373|ref|YP_002938890.1| RNA methyltransferase [Eubacterium rectale ATCC 33656]
 gi|238877049|gb|ACR76756.1| RNA methyltransferase [Eubacterium rectale ATCC 33656]
          Length = 418

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 80/148 (54%), Gaps = 15/148 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   ++ A++   V+ VE+ + ++  A  N   N + N++     + +F   
Sbjct: 273 IIDAYCGTGTIGIIAAKNAGEVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVE 332

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M ++ E            +   + +DPPR+G D+A +  +V+  P  ++Y+SC P++L R
Sbjct: 333 MAQKGE------------KADVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLAR 380

Query: 331 DLSILST-THTIERLALFDQFPYTRHME 357
           DL  L+   +T++R   +D FP+T H+E
Sbjct: 381 DLKYLTKHGYTVKRATPYDCFPFTSHIE 408


>gi|255102596|ref|ZP_05331573.1| putative RNA methyltransferase [Clostridium difficile QCD-63q42]
          Length = 454

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    
Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPK 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M RE +   +            + VDPPR G D+  +  +V   P  I+Y+SCNP +L R
Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLAR 416

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365
           DL  L+  H  + +     D FP++ H+E  VLL R+
Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETCVLLQRR 452


>gi|296111690|ref|YP_003622072.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295833222|gb|ADG41103.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 464

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 163/396 (41%), Gaps = 73/396 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +Y+ QLA K  ++ QM     VP      I  ++P  YR +A+  +             Q
Sbjct: 99  KYDAQLAFKQHQIEQMFKKVNVPVEVKPTIGMADPTKYRNKAQVPV-------------Q 145

Query: 66  QTKERMRIDYFMPGS--------LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ---- 113
               R+   ++  GS          I    ++   T+  + L    L   D  T++    
Sbjct: 146 LINGRLETGFYRRGSHKLVPVEDFYIQDPKVDEAVTVTRDILRDLGLSAYDEETNKGVVR 205

Query: 114 ---------SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ---------LIGRA 155
                    S + +V +I +       +E A RL+  L   K  I          ++G+ 
Sbjct: 206 HIMARRGYYSHELMVVIITNTKKLPEEQEIATRLQAKLPELKSFIHNINNHDTNVIMGQW 265

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQ--GD 212
           N+T      D + ++L   G+  +     NSF Q N      +  + LAA K G++    
Sbjct: 266 NET--VWGEDEIHDQLM--GKDFVIG--PNSFYQVNPQTTATL--YTLAAEKAGLKKTDT 317

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G  +L +A    ++  VE+ + +VE A  N   NH++NV        EF  A
Sbjct: 318 VVDAYSGIGTITLSIADKVKKIYGVEVVENAVEDAEKNAKNNHIDNV--------EFVTA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330
              E+     +D      +   +FVDPPR GL    +  V A  P   +YISCNP +L R
Sbjct: 370 DAPEQMVKWAED----GLKPNVVFVDPPRKGLTSELISAVSAMKPETFVYISCNPATLAR 425

Query: 331 D-LSILSTTHTIE-RLALFDQFPYTRHMECGVLLVR 364
           D + IL+    I+  +   DQFP T H+E   +  R
Sbjct: 426 DAVQILAEGFEIDGAVQPLDQFPQTTHVESVTVFKR 461


>gi|51245295|ref|YP_065179.1| RNA-methyltransferase [Desulfotalea psychrophila LSv54]
 gi|50876332|emb|CAG36172.1| related to RNA-methyltransferase [Desulfotalea psychrophila LSv54]
          Length = 444

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
           L  DY  + L  AG+ +  +   N F Q N   NV M+E VLA A    +  +L+L+CG 
Sbjct: 250 LSLDYKPQAL--AGKKISMQWEVNGFCQVNIKQNVQMIETVLAFADIRDEESVLDLFCGM 307

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNFS+ LA     V   E    ++ +A+ N   N ++N    +    +    +  ++   
Sbjct: 308 GNFSIPLACQAKAVTGFEGQGSAIRSAKKNALNNGLDNCSFYQKPVHKACAELIADKRV- 366

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTH 339
                      +  + +DPPR G  +    + +     ++YISC+P +L RDL+ LS   
Sbjct: 367 -----------YDCVIIDPPRQGAPELAGQLAKLCQKRLIYISCDPATLTRDLAELSKQG 415

Query: 340 -TIERLALFDQFPYTRHMECGVLLVRKP 366
             I+++   D FP T H+E  VLL   P
Sbjct: 416 FQIKKIQPIDMFPQTYHIENVVLLEPCP 443


>gi|14590965|ref|NP_143040.1| RNA methyltransferase [Pyrococcus horikoshii OT3]
 gi|50401321|sp|O58864|Y1137_PYRHO RecName: Full=Uncharacterized RNA methyltransferase PH1137
 gi|3257554|dbj|BAA30237.1| 407aa long hypothetical RNA methyltransferase [Pyrococcus
           horikoshii OT3]
          Length = 407

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 29/196 (14%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           R+++ E+L      +IY    NSF Q N+   V++++ V    +G +  +L++Y G G F
Sbjct: 232 REFITEKLD----DVIYLIHPNSFFQTNSYQAVNLVKKVSELVEGER--VLDMYSGVGTF 285

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA+   +V+  +  + ++E AR N   N V+ V         F  A  RE E N   
Sbjct: 286 GIYLAKRGFKVVGFDSNEFAIEMARKNAKINKVDAV---------FDVATDREVEVN--- 333

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTI 341
                   F T+ VDPPR GL    +  + +  P  I+Y+SCNP +  RD+  L   + I
Sbjct: 334 -------GFDTVIVDPPRVGLHPKLIKKLNREKPEVIVYVSCNPKTFARDIEKLE--YKI 384

Query: 342 ERLALFDQFPYTRHME 357
           + +   D FP+T H+E
Sbjct: 385 DEIVALDMFPHTPHLE 400


>gi|290476632|ref|YP_003469537.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289175970|emb|CBJ82773.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 450

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 25/188 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   LA       D +L+L+CG GNF+L +A     V+ VE     V 
Sbjct: 276 FIQINDEVNQKMVVQALAWLDLQPTDRVLDLFCGMGNFTLPMATKAQTVVGVEGVAALVA 335

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS-----YRFKTIFVDPP 300
             +YN   N +NNV                   F+   + DIH        F  + +DP 
Sbjct: 336 NGQYNAQLNELNNVDF-----------------FHENLESDIHQQPWAVLGFNKVLLDPA 378

Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358
           R+G       +V+  P  ++Y+SCNP +L RD  I L   + +  + + D FP+T H+E 
Sbjct: 379 RAGAAGVMSHIVKLAPERVVYVSCNPTTLARDSKILLEAGYHLVSVRMLDMFPHTGHLES 438

Query: 359 GVLLVRKP 366
             L  R+P
Sbjct: 439 MALFSREP 446


>gi|49476818|ref|YP_034754.1| tRNA (uracil-5-)-methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52144821|ref|YP_082009.1| RNA methyltransferase [Bacillus cereus E33L]
 gi|196034722|ref|ZP_03102130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus W]
 gi|196040108|ref|ZP_03107410.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           NVH0597-99]
 gi|218231359|ref|YP_002365269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus B4264]
 gi|218901630|ref|YP_002449464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH820]
 gi|228925680|ref|ZP_04088767.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228944240|ref|ZP_04106616.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228956903|ref|ZP_04118684.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229120088|ref|ZP_04249340.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
 gi|229143212|ref|ZP_04271644.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|296501251|ref|YP_003662951.1| tRNA(Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
 gi|300119050|ref|ZP_07056761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus SJ1]
 gi|49328374|gb|AAT59020.1| tRNA (uracil-5-)-methyltransferase (RNA methyltransferase, TrmA
           family) [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978290|gb|AAU19840.1| RNA methyltransferase, TrmA family [Bacillus cereus E33L]
 gi|195992765|gb|EDX56725.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus W]
 gi|196028963|gb|EDX67568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           NVH0597-99]
 gi|218159316|gb|ACK59308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus B4264]
 gi|218538073|gb|ACK90471.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH820]
 gi|228640293|gb|EEK96691.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228663326|gb|EEL18914.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
 gi|228802746|gb|EEM49582.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228815391|gb|EEM61636.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228833955|gb|EEM79505.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|296322303|gb|ADH05231.1| tRNA(Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
 gi|298723666|gb|EFI64397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus SJ1]
          Length = 459

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++  AR N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E             +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL R
Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459


>gi|145300354|ref|YP_001143195.1| 23S rRNA 5-methyluridine methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|189045732|sp|A4SRC5|RUMA_AERS4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|142853126|gb|ABO91447.1| 23S rRNA (uracil-5-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 439

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 15/176 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  IN  M+   LA     + D +L+L+CG GNF+L LAR    V+ VE     
Sbjct: 269 GDFIQVNGPINQSMVAQALAWLGASKDDKVLDLFCGIGNFTLPLARQAREVVGVEGDLAM 328

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A  N   N ++N +  +         M   RE             F  + +DP R G
Sbjct: 329 VARAEENARRNGIDNARFYKADLSGDIVGMSWARE------------GFDLVLLDPARPG 376

Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
             +    +V+  P  ++Y+SCNP +L RD  +L    + + RL + D FP+T H+E
Sbjct: 377 ALEVMGHVVKLSPKRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLE 432


>gi|299135646|ref|ZP_07028830.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX8]
 gi|298601770|gb|EFI57924.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX8]
          Length = 433

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 170/378 (44%), Gaps = 45/378 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +Y  Q+  K D LR+ M    V   P +     EP  YR R  F +    + L+ + +  
Sbjct: 80  EYATQVEIKRDILRETMQRAGVNTLPEIASHTGEPWGYRNRVRFRLGKV-EGLFRVGYSV 138

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRL----EPLLRAKLF-----QIDYLTSQSDQ 116
           +       + F+P +    A  +   A + L    E  + AKL+     ++++  +    
Sbjct: 139 RGT-----NAFLPITQCPIAAPLLWKAAVALLQLSENNIEAKLWLEAANEVEFFCNADLS 193

Query: 117 AI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            + +TL+  R    A +    RL +AL     ++   G         + ++  E   +AG
Sbjct: 194 RLQMTLLCARA-KPAKKNSFARLCEALQQGVPELSGAGVLTGDARGGNTNFT-EGWGIAG 251

Query: 176 RTLIYRQIENSFTQPNAG---INVHMLEWVLA-ATKGIQGDLL-ELYCGNGNFSLVLARH 230
             L YR  + ++     G   +N  ++E +L     G  GD+  +L+ G G FS VLAR 
Sbjct: 252 --LAYRVADENYWVSRGGFFQVNRFLVEKLLPLVCVGRSGDIAWDLFAGVGLFSRVLARS 309

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           F +V AVE A PS  A    I+   + +  + V+ S+ EF +    +RE           
Sbjct: 310 FAQVTAVE-ANPSA-ANDLRISLGKLGSQHRSVQASTLEFLRGAVVQRE----------- 356

Query: 290 YRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
            R   I +DPPR+G  ++   + +  A P ++Y+SC+P +L RDL +L   + I  + L 
Sbjct: 357 -RPALIVLDPPRAGAGVEACELLLKLAAPAVVYVSCDPTTLARDLVVLQRDYRIAEIHLV 415

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP T H+E  V+L R+
Sbjct: 416 DLFPQTFHLETVVMLARR 433


>gi|261212969|ref|ZP_05927253.1| RNA methyltransferase TrmA family [Vibrio sp. RC341]
 gi|260838034|gb|EEX64711.1| RNA methyltransferase TrmA family [Vibrio sp. RC341]
          Length = 377

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTVVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|87124488|ref|ZP_01080337.1| hypothetical protein RS9917_12780 [Synechococcus sp. RS9917]
 gi|86168060|gb|EAQ69318.1| hypothetical protein RS9917_12780 [Synechococcus sp. RS9917]
          Length = 461

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 83/171 (48%), Gaps = 24/171 (14%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +W+L+    I   +++ YCG G  +L LA     VL +E+ + SVE AR N   N +  V
Sbjct: 306 QWLLSQAGPIA--VIDAYCGIGTIALPLAAAGHSVLGLEVHQASVEQARRNAEHNGLTGV 363

Query: 260 KIVRMSSK-EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH- 317
             +    +    +A+ +                 + + VDPPR GLD +    + A P  
Sbjct: 364 CFLAGDVQHHLAEALPQH----------------QALVVDPPRKGLDPSVTEQILACPPR 407

Query: 318 -ILYISCNPDSLCRDLSILS---TTHTIERLALFDQFPYTRHMECGVLLVR 364
            + Y+SC+P +L RDL+ L+     + I RL  FD FP T H+EC  LL R
Sbjct: 408 WLAYLSCDPATLARDLARLAGPEAPYRIHRLQPFDFFPQTSHLECLALLER 458


>gi|229095127|ref|ZP_04226122.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
 gi|229101229|ref|ZP_04231993.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
 gi|229114081|ref|ZP_04243506.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228669351|gb|EEL24768.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228682197|gb|EEL36310.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
 gi|228688312|gb|EEL42195.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
          Length = 459

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 166/383 (43%), Gaps = 46/383 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +    L+      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMNNTLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    V + +    A   + G+  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGNEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +R   I VDPPR+G DD    T+  VQ    ++Y+SCNP SL RD++ L  ++ +E
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVQPK-RVVYVSCNPSSLARDVNALMKSYEVE 436

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T H+E  V LV+K
Sbjct: 437 YVQPVDMFPHTAHVENVVRLVKK 459


>gi|53803775|ref|YP_114333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus
           capsulatus str. Bath]
 gi|90126220|sp|Q606W5|RUMA_METCA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|53757536|gb|AAU91827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus
           capsulatus str. Bath]
          Length = 443

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 122/269 (45%), Gaps = 33/269 (12%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR--DALHARKYQIQLIGRANK 157
           LR +L QI+    +   A+V     R+L+D   E   RL            IQ  GR + 
Sbjct: 190 LRERLPQIEAAVGEERTALV----FRVLEDPTAEDFARLARFGKDQGLDVYIQREGRDSV 245

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLEL 216
             +  +  + D   ++    + +R     FTQ N  IN  M++ V+ A     +  +L+L
Sbjct: 246 APVYPETAH-DLSYSLPEWEVTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEERVLDL 304

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQAMRR 275
           +CG GNF+L LAR    V  VE    +V  A  N A N + NV+  V   SK  +     
Sbjct: 305 FCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEFHVADLSKPESCGSWA 364

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCR 330
            RE+++             + +DP RSG     + ++Q  P+     I+Y+SCNP +L R
Sbjct: 365 GREYHK-------------VLLDPSRSG----ALEILQCVPNWKAGRIVYVSCNPSTLAR 407

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHME 357
           D  IL     + + +  + D FP+T H+E
Sbjct: 408 DAGILVHEYGYRLLKAGVMDMFPHTAHVE 436


>gi|229089548|ref|ZP_04220815.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
 gi|228693764|gb|EEL47460.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
          Length = 459

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++  AR N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E             +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL R
Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459


>gi|297568513|ref|YP_003689857.1| RNA methyltransferase, TrmA family [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924428|gb|ADH85238.1| RNA methyltransferase, TrmA family [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 450

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR 229
           +T AGRTL  +     F+Q N   N  +L  ++   +    +++ +L+CG GNFSL LA 
Sbjct: 259 VTPAGRTLELQFEPWGFSQVNEEQNRQLLTLLIELLQPAGHEIVADLHCGMGNFSLPLAL 318

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V  V++   ++  A+ N  AN +NN               R+      L  +    
Sbjct: 319 LVGEVHGVDLQAAAIRGAKRNAEANRLNNCHF------------RQAEAHQGLAALQAAG 366

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALF 347
            R   + +DPPR+G  +    +    P  ++ ISC+P ++ RDL ++L+  + +E + L 
Sbjct: 367 IRPDVLLLDPPRAGCRELVATLEAPLPGKVVMISCDPATMTRDLAALLALNYQVETMRLV 426

Query: 348 DQFPYTRHMECGVLLVRKPS 367
           D FP T H+E   LL R  S
Sbjct: 427 DMFPQTHHLETITLLSRNNS 446


>gi|238750559|ref|ZP_04612059.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia rohdei ATCC
           43380]
 gi|238711207|gb|EEQ03425.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia rohdei ATCC
           43380]
          Length = 433

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 39/207 (18%)

Query: 180 YRQIEN--------SFTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSL 225
           Y QIE          F Q N  +N  M    +EW+      +Q D  +L+L+CG GNF+L
Sbjct: 244 YYQIEGLRLAFHPRDFIQVNDAVNQQMVAQAIEWL-----DVQPDERVLDLFCGMGNFTL 298

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA+    V+ VE     V   +YN  +N + NV                    N   DI
Sbjct: 299 PLAKLAREVVGVEGVAALVANGQYNARSNTLPNVSFFHE---------------NLESDI 343

Query: 286 DIHSYR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHT 340
               +    F  + +DP R+G       +V+  P  ++Y+SCNP +L RD  + L+  + 
Sbjct: 344 SCQPWAAQGFDKVLLDPARAGASGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYR 403

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           + ++ + D FP+T H+E   L +++P 
Sbjct: 404 LAQVRMLDMFPHTGHLESMALFMQEPG 430


>gi|228931916|ref|ZP_04094810.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228827701|gb|EEM73441.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 459

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++  AR N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E             +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL R
Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459


>gi|291278654|ref|YP_003495489.1| tRNA (uracil-5-)-methyltransferase [Deferribacter desulfuricans
           SSM1]
 gi|290753356|dbj|BAI79733.1| tRNA (uracil-5-)-methyltransferase [Deferribacter desulfuricans
           SSM1]
          Length = 393

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 93/182 (51%), Gaps = 21/182 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +SF+Q N  +     E V++        +LELY G+G F+  +A+    VLA+E  + ++
Sbjct: 230 DSFSQSNRFLLREFAEVVVSFVDE-NDSVLELYAGSGFFTHKVAKKAKAVLAIEENREAI 288

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
              +      +V NV I+      +++A         +K IDI+ Y   T+ VDPPR+GL
Sbjct: 289 SLLK----KLNVENVDII------YSKA-------ENIKRIDINPYN--TLLVDPPRTGL 329

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
               +  +   +  I+Y+SCNP ++ RD+  LS  + +++    D FP T H+E   LL 
Sbjct: 330 SKPVIDAISNRFEKIVYVSCNPSTMARDILRLSNNYDLKKYLFIDMFPNTYHIESIALLE 389

Query: 364 RK 365
           RK
Sbjct: 390 RK 391


>gi|237743303|ref|ZP_04573784.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 7_1]
 gi|229433082|gb|EEO43294.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 7_1]
          Length = 451

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   +++++   +V A+EI K + E        N + N++ +  +       
Sbjct: 308 IVDAYSGTGTIGMIMSKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAV------ 361

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330
              E+E  +L +   ++ +  TI  DP R GLD + +  V       ++YISCNP +  R
Sbjct: 362 ---EKELVKLIN---NNQKIDTIIFDPSRKGLDASIIDKVAELNLKEVVYISCNPSTFAR 415

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ + S   + +++L   D FP T H+EC  L+V++
Sbjct: 416 DVKLFSEKGYVLKKLQAVDMFPQTSHIECVGLIVKE 451


>gi|169825906|ref|YP_001696064.1| putative RNA methyltransferase [Lysinibacillus sphaericus C3-41]
 gi|168990394|gb|ACA37934.1| Hypothetical RNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
          Length = 462

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 162/386 (41%), Gaps = 51/386 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVP---NLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIM 62
           YE+QL EK D + Q +  +  P    +++ ++     P HYR +++F +  +G  +Y  +
Sbjct: 96  YEKQLLEKRDIVIQALERYAKPLAETVEVRKTLGMDNPWHYRNKSQFQVRKEGKRVYAGL 155

Query: 63  FDQQTKERMRID-----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           F + + + + I+             +    ++  L I +     L+ L+R  + +    T
Sbjct: 156 FAEGSNKLLNINDCLVQHPVTSKITVATRKILQKLNITIYDGRTLDGLVRTIVVRTGIRT 215

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            ++    V L+  R       E   R++    +     Q I R   + I     + DE +
Sbjct: 216 GETQ---VVLVTTRKEIPHLAELITRIKKIDPSIVSIAQNINREKTSLI-----FGDETI 267

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNG 221
            + G+  I+ ++          +F Q N    VH+ + +   AA  G +  +++ YCG G
Sbjct: 268 VLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYDEIKKAAALTGKE-SVVDAYCGVG 326

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LA     V  +++   S++ AR N   +   + K    +++      R+E     
Sbjct: 327 TVGLWLADQAAEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLSKWRKE----- 381

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTH 339
                   +    I VDPPR+GL    +  V +  P   +Y SCNP +L +DL  LS  +
Sbjct: 382 -------GFTPDVITVDPPRTGLASEFIQTVLKLRPKRFVYTSCNPSTLAKDLQQLSKHY 434

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E +   D F  T  +EC   LV K
Sbjct: 435 HVEYIQPVDMFSQTAQVECVAKLVLK 460


>gi|312277778|gb|ADQ62435.1| TRNA methyltransferase, TrmA family [Streptococcus thermophilus
           ND03]
          Length = 454

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 158/388 (40%), Gaps = 56/388 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61
           +Y++QL  K D L Q +  F+  N + +         +P HYR + +F I   G  +   
Sbjct: 88  RYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSFGGSVKAG 147

Query: 62  MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102
           +F + +   + ID  +    L  A+M                   I  + T+ +   L +
Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVMIRRALGS 207

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              Q+ ++TS +  ++  L+    L  ++ E      +  +++  +I       +T+I  
Sbjct: 208 NQVQLIFVTS-NPVSLTKLVKELTL--SYPEIVTVAVNYNYSKSSEI----YGQETEIIW 260

Query: 163 DRDYVDERL---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
            +D + E +     A     + Q+    T+   G  V  LE   +        L++ YCG
Sbjct: 261 GQDTIQEEVLDYNFALSPRAFYQLNPKQTEVLYGQAVEALEVDKSE------HLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A+    +  ++I   ++E AR N  +  ++N       +++      +E   
Sbjct: 315 VGTIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE--- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                     YR   + VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  L+ 
Sbjct: 372 ---------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAK 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L +K
Sbjct: 423 VYDVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|257869904|ref|ZP_05649557.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum
           EG2]
 gi|257804068|gb|EEV32890.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum
           EG2]
          Length = 467

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           +++ Y G G   + LA     VL +E+   +VE A+ N A N + NV   V  + K   Q
Sbjct: 322 VVDAYAGIGTIGISLADRVQEVLGMEVVAEAVEDAKANAARNGLENVHYFVGKAEKIMPQ 381

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
            +R                +   +FVDPPR GL+ + +    A     I+YISCNP +L 
Sbjct: 382 WLR-------------EGIQPTVVFVDPPRKGLEASFIETTAAVKPERIVYISCNPATLA 428

Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           RDL++ +   +  +++   D FP T H+EC VL+ R
Sbjct: 429 RDLALFAEEGYVTKQVQPVDLFPQTTHVECVVLMSR 464


>gi|229148824|ref|ZP_04277072.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
 gi|228634618|gb|EEK91199.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
          Length = 459

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++  AR N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E             +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL R
Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459


>gi|262173414|ref|ZP_06041091.1| RNA methyltransferase TrmA family [Vibrio mimicus MB-451]
 gi|261890772|gb|EEY36759.1| RNA methyltransferase TrmA family [Vibrio mimicus MB-451]
          Length = 375

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    H+LY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHVLYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|228983684|ref|ZP_04143884.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228776036|gb|EEM24402.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 459

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++  AR N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E             +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL R
Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459


>gi|146422481|ref|XP_001487178.1| hypothetical protein PGUG_00555 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 532

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 26/228 (11%)

Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LA 204
           ++  I   +  K C+       R  V GR   +   E  F Q N  I   +L++V   LA
Sbjct: 319 EVSTIKDNDSIKTCVTNSRQIVREVVDGREFEFSAGE--FFQNNNSILPAVLQYVRSNLA 376

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            +      L++ YCG+G FS+  + +  +V+ VE++  SV+ A  N A N++ NVK +  
Sbjct: 377 ISDKQDNYLVDAYCGSGLFSISCSDNVKKVIGVEVSADSVKFAERNAANNNIANVKFIVG 436

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
            ++E              KDID  + +  ++ +DPPR G DD  +  +  Y    I+YIS
Sbjct: 437 KAEEI------------FKDIDTPALQ-TSVILDPPRKGCDDVFLNQLSEYNPVKIVYIS 483

Query: 323 CNPDSLCRDL------SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CN  S  RD+      ++    + +E +  FD FP T H+E   +L+R
Sbjct: 484 CNVHSQARDVEWFLNNTVNGANYKVESIKGFDFFPQTHHVESVAVLIR 531


>gi|190344722|gb|EDK36457.2| hypothetical protein PGUG_00555 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 532

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 26/228 (11%)

Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LA 204
           ++  I   +  K C+       R  V GR   +   E  F Q N  I   +L++V   LA
Sbjct: 319 EVSTIKDNDSIKTCVTNSRQIVREVVDGREFEFSAGE--FFQNNNSILPAVLQYVRSNLA 376

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            +      L++ YCG+G FS+  + +  +V+ VE++  SV+ A  N A N++ NVK +  
Sbjct: 377 ISDKQDNYLVDAYCGSGLFSISCSDNVKKVIGVEVSADSVKFAERNAANNNIANVKFIVG 436

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
            ++E              KDID  + +  ++ +DPPR G DD  +  +  Y    I+YIS
Sbjct: 437 KAEEI------------FKDIDTPASQ-TSVILDPPRKGCDDVFLNQLSEYNPVKIVYIS 483

Query: 323 CNPDSLCRDL------SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CN  S  RD+      ++    + +E +  FD FP T H+E   +L+R
Sbjct: 484 CNVHSQARDVEWFLNNTVNGANYKVESIKGFDFFPQTHHVESVAVLIR 531


>gi|258625542|ref|ZP_05720431.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM603]
 gi|258582186|gb|EEW07046.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM603]
          Length = 375

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGSELTAQLEALAPKHILYSSCNPQTMVKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           L+RK
Sbjct: 372 LIRK 375


>gi|160947332|ref|ZP_02094499.1| hypothetical protein PEPMIC_01266 [Parvimonas micra ATCC 33270]
 gi|158446466|gb|EDP23461.1| hypothetical protein PEPMIC_01266 [Parvimonas micra ATCC 33270]
          Length = 448

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 16/152 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LL+LY G G  S+  + +F +V+ VE+ K +V+ A+ N+  N V NV+ +   S+E  +
Sbjct: 294 NLLDLYSGIGTTSIYFSENFKKVIGVEVVKDAVKDAKENLKLNDVKNVEFLYGKSEEKIE 353

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329
            + +        +IDI S       VDPPR GLD   V  +       ++Y+SCN  +L 
Sbjct: 354 EILKNN------NIDIIS-------VDPPRKGLDKKVVDTIIKSNIKKVVYVSCNGATLT 400

Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           RDL   +     ++++ L D F  T H E  V
Sbjct: 401 RDLKYFIDGGFELKKVKLCDMFSKTGHCEVVV 432


>gi|256847809|ref|ZP_05553254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715498|gb|EEU30474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 458

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL +A+H  +V  VEI   ++  A+ N   N + N + V          
Sbjct: 312 VIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIADAKKNAQNNEITNAEFV---------V 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
            + E +F + +       +   + VDPPR GL ++ +      A   ++Y+SCNP +L R
Sbjct: 363 GKAEEQFAKWQ---AEGLKPDVVIVDPPRKGLAESLIEATGKMAPKKVIYVSCNPATLVR 419

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           D+   +    H  + +   DQFP T H+E   +L R
Sbjct: 420 DIQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLER 455


>gi|229148722|ref|ZP_04276972.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
 gi|228634730|gb|EEK91309.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
          Length = 454

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEIQPVDMFPHTTHVEC 447


>gi|239628824|ref|ZP_04671855.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518970|gb|EEQ58836.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 475

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 14/154 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E AR N A N ++NV+     ++E    + 
Sbjct: 333 DLYCGIGTISLFLAQKAKKVYGVEIIPQAIEDARRNAALNGMDNVEFFVGKAEE---VLP 389

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDL 332
            + E N+     IH+     I VDPPR G D   +  + +  P  ++Y+SC+  +L RDL
Sbjct: 390 EQYEKNQ-----IHA---DVIVVDPPRKGCDTVCLDTILKMRPEKVVYVSCDSATLARDL 441

Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             L+   + + ++   D FP T H EC V L RK
Sbjct: 442 RYLADGGYVVGKVRGCDMFPGTVHTECIVELCRK 475


>gi|148981901|ref|ZP_01816559.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
 gi|145960702|gb|EDK26044.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
          Length = 439

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 94/200 (47%), Gaps = 31/200 (15%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           G TL +    N F Q N  +N  M    +EW+          +L+L+CG GNFSL +A+ 
Sbjct: 260 GVTLPFE--PNHFIQVNQKVNQQMVAQAIEWLEPKA---DERVLDLFCGLGNFSLPIAQQ 314

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V+ VE     V+ A  N   N ++N         EF QA       N  +D+   ++
Sbjct: 315 SAFVVGVEGVDEMVQQATSNAQLNQLSNT--------EFYQA-------NLEEDLSAQAW 359

Query: 291 ---RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERL 344
              +F  I +DP R+G     V  + A     ++Y+SCNP +L RD  S+    + + +L
Sbjct: 360 AKEKFDKILLDPARAGA-SGVVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKL 418

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   L ++
Sbjct: 419 GMLDMFPHTSHLESMALFIK 438


>gi|168186646|ref|ZP_02621281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           C str. Eklund]
 gi|169295463|gb|EDS77596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           C str. Eklund]
          Length = 450

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 31/236 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L   LH     +  + +A+  K+   RDY+ E +      L ++    SF Q     N 
Sbjct: 238 ELTGILHTINDSLSDVVQADSMKVLFGRDYIMEEVL----GLKFKISPFSFFQ----TNT 289

Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              E + +  +   GD     + +LYCG G    + A + ++V+ +E+ + +V+AA  N 
Sbjct: 290 KGAEALYSIVREFMGDAKSKVVFDLYCGTGTIGQIAAHNAEKVIGIELIEEAVKAANENA 349

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N + N + +     +             +KDI +       I +DPPR G+    +  
Sbjct: 350 KLNGLTNCEFLAGDVAKV------------IKDIKVKP---DIIILDPPRPGVHPDALKY 394

Query: 312 VQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           V  +    I+Y+SCNP +L  DL  ++   + +E++ + D FP+T H+E  V L +
Sbjct: 395 VTKFNAKDIIYVSCNPKTLVEDLKYLIKEGYKVEKVKVKDMFPHTPHVESAVKLSK 450


>gi|289648123|ref|ZP_06479466.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 451

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V+AVE     
Sbjct: 279 GDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAKEVVAVEGVATM 338

Query: 244 VEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           VE A  N  +N ++NV+  +   S+  T A             D  +  F  + +DPPR 
Sbjct: 339 VERAAVNAMSNDLHNVQFFQADLSQPLTHA-------------DWAAEGFSAVLLDPPRD 385

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGV 360
           G  +    + +     +LY+SCN  +L RD + ++S  + ++R  + D FP T H+E   
Sbjct: 386 GAFEVVRQIRKTGARRLLYVSCNSATLARDTVELISQGYRLKRAGILDMFPQTAHVEAMA 445

Query: 361 LL 362
           L 
Sbjct: 446 LF 447


>gi|126649520|ref|ZP_01721761.1| RNA methyltransferase, TrmA family protein [Bacillus sp. B14905]
 gi|126593845|gb|EAZ87768.1| RNA methyltransferase, TrmA family protein [Bacillus sp. B14905]
          Length = 465

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 161/385 (41%), Gaps = 49/385 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVP---NLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIM 62
           YE+QL+EK D + Q +  +  P    +++ ++     P HYR +++F +  +G  +Y  +
Sbjct: 96  YEKQLSEKRDIVIQALERYAKPLAETVEVRKTLGMDNPWHYRNKSQFQVRKEGKRVYAGL 155

Query: 63  FDQQTKERMRID-----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           F + + + + I+             +    ++  L I +     L+ L+R  + +    T
Sbjct: 156 FVEGSNKLLNINDCLVQHPVTSKVTVATRKILQKLNITIYDGRTLDGLVRTIVVRTGIRT 215

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            ++    V L+  R       E   R++    +     Q I R   + I     + DE +
Sbjct: 216 GETQ---VVLVTTRKEIPHLAELITRIKKIDPSIVSIAQNINREKTSLI-----FGDETI 267

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGN 222
            + G+  I+ ++          +F Q N    VH+  E   AA    +  +++ YCG G 
Sbjct: 268 VLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYNEIKKAAALTGKESIVDAYCGVGT 327

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA     V  +++   S++ AR N   +   + K    +++      R+E      
Sbjct: 328 VGLWLADQAQEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLAKWRKE------ 381

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHT 340
                  +    I VDPPR+GL    +  V +  P   +Y SCNP +L +DL  LS  + 
Sbjct: 382 ------GFTPDVITVDPPRTGLAPEFIQTVLKLKPKRFVYTSCNPSTLAKDLQQLSKLYH 435

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +E +   D F  T  +EC   +V K
Sbjct: 436 VEYIQPVDMFSQTAQVECVCSMVLK 460


>gi|238791235|ref|ZP_04634874.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia intermedia
           ATCC 29909]
 gi|238729368|gb|EEQ20883.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia intermedia
           ATCC 29909]
          Length = 425

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 17/185 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           F Q N  +N  M+   LA    +Q D  +L+L+CG GNF+L LA+    V+ VE     V
Sbjct: 251 FIQVNDTVNQQMVAQALAWLD-VQPDERVLDLFCGMGNFTLPLAKRAREVVGVEGVAELV 309

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
              +YN  +N + NV         F + +  E + +R       +  F  + +DP R+G 
Sbjct: 310 ANGQYNAQSNALANVSF-------FHENL--ESDISRQP---WATQGFDKVLLDPARAGA 357

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
                 +V+  P  ++Y+SCNP +L RD  + L+  + + ++ + D FP+T H+E   L 
Sbjct: 358 AGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMALF 417

Query: 363 VRKPS 367
           +++P 
Sbjct: 418 MQEPG 422


>gi|146328742|ref|YP_001209970.1| 23S rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|146232212|gb|ABQ13190.1| 23S rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
          Length = 424

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 156/333 (46%), Gaps = 43/333 (12%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-LLR 101
           YR RA   + H  +D+  + F    K +   D       LI  L   + A + L P  LR
Sbjct: 122 YRRRARLAV-HYENDVIAVGF----KAKRSHDVVAVNDCLI--LQEHLAAALPLLPDFLR 174

Query: 102 AKL-FQID--YLTSQSDQAIVTL-IYHRLLDDAWRECAIRLRDALHARKYQIQ--LIGRA 155
           A L  ++D   LT+    A +TL    R L  AW E    L  A H + ++    L G  
Sbjct: 175 ALLPVKVDEILLTAGEKVAALTLRTKKRALSPAWGEKWANLAGA-HWQLWENDRCLFGEP 233

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLL 214
           N      D  Y      ++G TL +    + F Q NA +N  +++ VLA    ++  ++L
Sbjct: 234 N------DLYY----QPISGVTLHF--TPDDFIQVNASVNEALIQTVLAWLAPLEKSEVL 281

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G GNFSL LA    RV AVE  +  V+     +AA         ++SS+   Q M 
Sbjct: 282 DLFSGLGNFSLPLAYKGARVTAVEGVRAMVQRGA-KMAAEQ-------QLSSRLEMQCM- 332

Query: 275 REREFNRLKDIDIHSYR-FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL 332
              +   +    + S++  K+  +DPPR+G       + + +P  I+Y+SCNP +L RD+
Sbjct: 333 ---DLFSVSAAQMKSWQSAKSWLLDPPRAGAHAVVQALPKKFPEKIVYVSCNPATLARDV 389

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +IL S    +ER  + + F ++ H+E  +L+ R
Sbjct: 390 AILQSKGFHLERGQVVNMFAHSAHIESVILMTR 422


>gi|187934647|ref|YP_001887516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B str. Eklund 17B]
 gi|187722800|gb|ACD24021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B str. Eklund 17B]
          Length = 455

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 19/164 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + + YCG G  +L L++   +V  VEI +P++  A+ N   N+V+N +     
Sbjct: 305 GLTGNETVFDAYCGTGTITLFLSQKAKKVYGVEIIEPAIINAKENAKLNNVDNAEFFVGK 364

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYIS 322
           S+E    +  E              +   I VDPPR G D      +G V+    ++Y+S
Sbjct: 365 SEEVIPNLISE------------GLKADIIVVDPPRKGCDIKLLEAIGDVKP-ERVVYVS 411

Query: 323 CNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           C+P +L RDL IL    + +  +   D FP T H+E  V L++K
Sbjct: 412 CDPSTLSRDLKILDEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455


>gi|310658499|ref|YP_003936220.1| RNA methyltransferase [Clostridium sticklandii DSM 519]
 gi|308825277|emb|CBH21315.1| Uncharacterized RNA methyltransferase CTC_01941 [Clostridium
           sticklandii]
          Length = 449

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 22/175 (12%)

Query: 195 NVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N H  E + +A K + GD    + +LY G G   + ++   ++++ +EI + +VEAA+ N
Sbjct: 288 NTHGAEVLYSAVKDMIGDKKDIIFDLYSGTGTIGITVSDKANKIVGIEIIEEAVEAAKEN 347

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           I  N++ N + +         A     E +++      S   + I +DPPR+G+    +G
Sbjct: 348 IKKNNITNCEFI---------AGDVATEVSKI------SENPELILLDPPRAGIHPKAMG 392

Query: 311 MVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
            + ++    ILYISCNP +L  DL +L S  + I+ +   D F  T H E  V L
Sbjct: 393 DIISFNSKEILYISCNPKALMHDLKVLKSAGYKIKEVVGVDLFANTPHCETIVKL 447


>gi|210613367|ref|ZP_03289687.1| hypothetical protein CLONEX_01894 [Clostridium nexile DSM 1787]
 gi|210151209|gb|EEA82217.1| hypothetical protein CLONEX_01894 [Clostridium nexile DSM 1787]
          Length = 464

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 9/163 (5%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + +LYCG G  SL LA+   +V  VEI   ++E A+ N A N + N +     
Sbjct: 304 GLHGNETVWDLYCGIGTISLFLAQKAKQVYGVEIIPQAIEDAKRNAALNGIENAQFFVGK 363

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323
           S+E           N  K+          I VDPPR G D+  +  M+Q  P  I+Y+SC
Sbjct: 364 SEEVLPQYYE----NYAKEHGGEKAYADVIVVDPPRKGCDETLLETMIQMQPERIVYVSC 419

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  +L RDL  L    + ++R+   D F  T H+E  VLL RK
Sbjct: 420 DSATLARDLKYLCENGYELKRVRAVDMFANTVHVETVVLLQRK 462


>gi|116630115|ref|YP_815287.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           gasseri ATCC 33323]
 gi|116095697|gb|ABJ60849.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           gasseri ATCC 33323]
          Length = 450

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ KP+V+ A  N   N +NN + V   ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E              +   IFVDPPR GL    +   V+ +P  I+YISCNP ++ R
Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVR 412

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +     +    +   D FP T H+E   +L R
Sbjct: 413 DLQLFREQGYDFNEIDPVDMFPQTPHVESVTVLER 447


>gi|157056857|gb|ABV02443.1| hypothetical protein [Arcobacter skirrowii]
          Length = 69

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 46/65 (70%)

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DP RSGLDD T  + + + +I+YISCNP +L RDL  L  TH + R ALFDQF Y+ H+E
Sbjct: 1   DPSRSGLDDTTRALAKNFTNIIYISCNPQTLHRDLEELLKTHKVLRFALFDQFAYSEHIE 60

Query: 358 CGVLL 362
            GV+L
Sbjct: 61  SGVIL 65


>gi|170730638|ref|YP_001776071.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa M12]
 gi|167965431|gb|ACA12441.1| RNA methyltransferase [Xylella fastidiosa M12]
          Length = 443

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
            ++R ++  F Q N G+N  M+   L     G    +L+L+CG GNF+L LAR    V+ 
Sbjct: 266 FVFRPLD--FIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVG 323

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     VE AR N   N + N +        F   + R++     +D       F  + 
Sbjct: 324 VEGDIGLVERARENARRNGLGNAEF-------FVADLTRDQ-----RDAPWMRQGFDKLL 371

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L       +  +   D FP+T
Sbjct: 372 LDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHT 431

Query: 354 RHME 357
            H+E
Sbjct: 432 AHVE 435


>gi|229074352|ref|ZP_04207390.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-18]
 gi|228708794|gb|EEL60929.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-18]
          Length = 459

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 167/383 (43%), Gaps = 46/383 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +++      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    V + +    A   + G+  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAA-ALTGNEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +R   I VDPPR+G DD    T+  VQ    ++Y+SCNP SL RD++ L  ++ +E
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVQPK-RVVYVSCNPSSLARDVNALMKSYEVE 436

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T H+E  V LV+K
Sbjct: 437 YVQPVDMFPHTAHVENVVRLVKK 459


>gi|326571866|gb|EGE21871.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           BC8]
          Length = 497

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141
           + AL+ ++ A   + P L   + Q       S +++  ++ H + LDD   E   +LR  
Sbjct: 209 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 264

Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190
             AR +Q+ L  +   +   +D  D     LTV     ++  + N           FTQ 
Sbjct: 265 FAARNWQLLLQPKGVDSVHRIDTEDARPTSLTVPPTGGLFYHLPNFDLTYEFSPLDFTQV 324

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246
           N  +N  M++   +     +G+ +L+L+CG GNFSLVLAR       V+ VE ++   E 
Sbjct: 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 384

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N  AN + + +     +K+ TQ +  +            + RF  + +DPPRSG  +
Sbjct: 385 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 434

Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
                V AY        I+Y+SCNP +L RD  +++   + +    + D F +T H+E
Sbjct: 435 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 487


>gi|308172559|ref|YP_003919264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM
           7]
 gi|307605423|emb|CBI41794.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM
           7]
 gi|328552324|gb|AEB22816.1| RNA methyltransferase, TrmA family protein [Bacillus
           amyloliquefaciens TA208]
 gi|328910668|gb|AEB62264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens LL3]
          Length = 458

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 17/150 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++     
Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E                 T+ VDPPR G D+A +  +++  P  ++Y+SCNP +L R
Sbjct: 375 WYEE------------GITADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLAR 422

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMEC 358
           DL +L      T+E +   D FP+T H+EC
Sbjct: 423 DLRVLEDGGYQTLE-VQPVDMFPHTNHVEC 451


>gi|303240517|ref|ZP_07327033.1| RNA methyltransferase, TrmA family [Acetivibrio cellulolyticus CD2]
 gi|302591919|gb|EFL61651.1| RNA methyltransferase, TrmA family [Acetivibrio cellulolyticus CD2]
          Length = 552

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 16/162 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  + +LYCG G  SL L+    +V  VE+ + +V  A+ N   N V NV+     ++  
Sbjct: 313 QETVFDLYCGIGTISLFLSEKTKKVYGVEVVEEAVRDAKVNAGVNGVENVEFFVGEAERV 372

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDS 327
              M  +              +   + VDPPR G D   +  +V   P  I+Y+SCNP +
Sbjct: 373 IPEMYSK------------GIKADVVVVDPPRKGCDQVLLETLVSMEPRRIVYVSCNPAT 420

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKPS 367
           L RDL  L+     +  +   D FP+T H+E  VLL  +KPS
Sbjct: 421 LARDLGFLTERGFKVLEVQPVDMFPWTAHVETVVLLSQQKPS 462


>gi|237738953|ref|ZP_04569434.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423553|gb|EEO38600.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 453

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 163/384 (42%), Gaps = 47/384 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-VPNLQI---FRSEPIH-YRMR--AEFHIWHDGDDLYHI 61
           +YE QL  K   + ++M     +P+++I     SE ++ YR +    F ++  G+ +   
Sbjct: 87  KYESQLKYKKLMVEEVMRKIAGLPDIEISDVLASEDVYNYRNKIIEPFSVY--GNKIITG 144

Query: 62  MFDQQTKERMRIDYFMPGSLLINALM-----------IEMMATIRLEPLLRAKLFQIDYL 110
            F +++ E   +D  +  S L N ++           I +   I  + LLR  + + +  
Sbjct: 145 FFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNVMIRTN-- 202

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166
            S ++  +V +I    + +  +    RLR+ +   K  I +   + KT   +       Y
Sbjct: 203 -SNNEAMLVLIINSNKITENIKNLLFRLREKIEEIK-SIYISLNSKKTNTVIGEKNIFIY 260

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
            +E +      + +     SF Q N      + +  +     I    +++ Y G G   +
Sbjct: 261 GEESIKENLNGIEFHISPTSFFQINVKQAKRLYDIAINFFDNIDDKYIVDAYSGTGTIGM 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKD 284
           ++A+   +V A+EI K + E        N + N++ +  +  KE    +   +       
Sbjct: 321 IMAKKAKKVYAIEIVKSASEDGERTAKENGIENIEFINGAVEKELVNLINANK------- 373

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT-HTI 341
                 R  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + +
Sbjct: 374 ------RIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVL 427

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           ++L   D FP T H+EC V L+ K
Sbjct: 428 KKLQAVDMFPQTSHIEC-VGLIEK 450


>gi|151941596|gb|EDN59959.1| tRNA methyltransferase [Saccharomyces cerevisiae YJM789]
          Length = 602

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 21/160 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  ++  D+V+ VEI+  SV  A  N  AN V N + +   +++  ++
Sbjct: 455 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFES 514

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                       ID  S    ++ +DPPR G D+  +  + AY    I+YISCN  S  R
Sbjct: 515 ------------IDTPSEN-TSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQAR 561

Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+          + + IE +  FD FP T H+E   ++ R
Sbjct: 562 DVEYFLKETENGSAYQIESIRGFDFFPQTHHVESVCIMKR 601


>gi|296112377|ref|YP_003626315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Moraxella catarrhalis
           RH4]
 gi|295920071|gb|ADG60422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Moraxella catarrhalis
           RH4]
 gi|326569193|gb|EGE19254.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           BC7]
          Length = 497

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141
           + AL+ ++ A   + P L   + Q       S +++  ++ H + LDD   E   +LR  
Sbjct: 209 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 264

Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190
             AR +Q+ L  +   +   +D  D     LTV     ++  + N           FTQ 
Sbjct: 265 FAARNWQLLLQPKGVDSVHRIDTEDARPTSLTVPPTGGLFYHLPNFELTYEFSPLDFTQV 324

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246
           N  +N  M++   +     +G+ +L+L+CG GNFSLVLAR       V+ VE ++   E 
Sbjct: 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 384

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N  AN + + +     +K+ TQ +  +            + RF  + +DPPRSG  +
Sbjct: 385 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 434

Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
                V AY        I+Y+SCNP +L RD  +++   + +    + D F +T H+E
Sbjct: 435 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 487


>gi|255716342|ref|XP_002554452.1| KLTH0F05676p [Lachancea thermotolerans]
 gi|238935835|emb|CAR24015.1| KLTH0F05676p [Lachancea thermotolerans]
          Length = 597

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 98/223 (43%), Gaps = 33/223 (14%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212
           KT +   R  V E +   G T  +   E  F Q N  I   + E+V +  + I G     
Sbjct: 392 KTCVTNSRQVVTEYIN--GYTFEFSAGE--FFQNNNSILPKVTEYVCSNLQ-IPGSKPED 446

Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG+G FS+  ++  D+V+ VE++  SV  A  N  AN V N K V   ++  
Sbjct: 447 PHYLVDAYCGSGLFSITASKGVDKVIGVEVSADSVSFAEANAKANGVENCKFVVGKAECI 506

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
                          ID    R  ++ +DPPR G DD  +  +  Y    I+YISCN  S
Sbjct: 507 ------------FASIDTPCDR-TSVILDPPRKGCDDIFLKQLSEYNPARIVYISCNVHS 553

Query: 328 LCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
             RD+            + +E L  FD FP T H+E   +L R
Sbjct: 554 QARDMQYFLQETEKGKQYKVESLRGFDFFPQTHHVESVCVLTR 596


>gi|228963414|ref|ZP_04124575.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796308|gb|EEM43755.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 455

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|229188589|ref|ZP_04315628.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228594778|gb|EEK52558.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
          Length = 454

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|116624915|ref|YP_827071.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228077|gb|ABJ86786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 389

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 22/187 (11%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVE 238
           +R   NSF Q N  +   ++E    A +G +GD  L+LY G G  SL LAR F  V AVE
Sbjct: 219 FRVSSNSFFQVNRFLIDRLVE---VAIEGAEGDTALDLYAGVGLLSLPLARKFREVTAVE 275

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               +V   ++N   N + NV+ +  +++E+  A+    +                + +D
Sbjct: 276 SGAGAVRDLQFNAERNGLANVRALPKTAEEYLLALEAAPDL---------------VVLD 320

Query: 299 PPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355
           PPR+GL    V  + +  P  +  ++C+P +L RDL+ +++  + +E++ L D FP T H
Sbjct: 321 PPRTGLGKTVVKRLSELRPRQVTIVACDPATLARDLAGLVAAGYRVEKMTLVDLFPQTYH 380

Query: 356 MECGVLL 362
           +E  V L
Sbjct: 381 LETVVRL 387


>gi|134300101|ref|YP_001113597.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
 gi|134052801|gb|ABO50772.1| 23S rRNA m(5)U-1939 methyltransferase [Desulfotomaculum reducens
           MI-1]
          Length = 457

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  +L LAR    V+ +EI  P+V  A+ N   N + N K  + + ++    
Sbjct: 314 VIDAYCGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNTKFFQGAVEKLLPR 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           M ++              +   + +DPPR G +   +  +     P I+Y+SC+P +L R
Sbjct: 374 MAKD-------------LKPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLAR 420

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           DL +L    +   ++   D FP+T H+EC VL+
Sbjct: 421 DLGVLDKLGYQTLQVQPVDMFPWTYHVECVVLM 453


>gi|238854152|ref|ZP_04644499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           202-4]
 gi|238833228|gb|EEQ25518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           202-4]
          Length = 450

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ KP+V+ A  N   N +NN + V   ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E              +   IFVDPPR GL    +   V+ +P  I+YISCNP ++ R
Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVR 412

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +     +    +   D FP T H+E   +L R
Sbjct: 413 DLQLFREQGYDFNEIDPVDMFPQTPHVESVTVLER 447


>gi|218233353|ref|YP_002365162.1| RNA methyltransferase, TrmA family [Bacillus cereus B4264]
 gi|218161310|gb|ACK61302.1| RNA methyltransferase, TrmA family [Bacillus cereus B4264]
          Length = 454

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|229526519|ref|ZP_04415923.1| RNA methyltransferase TrmA family [Vibrio cholerae bv. albensis
           VL426]
 gi|229336677|gb|EEO01695.1| RNA methyltransferase TrmA family [Vibrio cholerae bv. albensis
           VL426]
          Length = 377

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +     A  + I    + +L+CG G F+L  A     V  +EI   +
Sbjct: 208 KSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFALHCAAPNTAVTGIEIEPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +A+ +     ++N+    + S +F+Q+     E                + V+PPR G
Sbjct: 268 IASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRG 312

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       ++A    HILY SCNP ++ +D++ L++   I R+  FD FP+T H E   L
Sbjct: 313 LGCELTAQLEALAPKHILYSSCNPQTMAKDIAELASYQMI-RVQWFDMFPHTDHAEVLTL 371

Query: 362 LVRK 365
           LVRK
Sbjct: 372 LVRK 375


>gi|320527936|ref|ZP_08029102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
 gi|320131562|gb|EFW24126.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
          Length = 534

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 22/206 (10%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQ--PNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           R Y++E L   G T  +R    SF Q  P A   ++     LA   G +  L++LYCG G
Sbjct: 253 RHYIEEELL--GCT--FRISARSFYQINPYATKELYSKAIELAGLTGNE-TLIDLYCGTG 307

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              ++ A+   +V  +EI   ++  A  N   N+V N+K +   + E  +         +
Sbjct: 308 TMGIIAAKQAKQVYGIEIVADAIRDANTNAENNNVTNIKFINADASEGAK---------Q 358

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TT 338
           + D  I +     + +DPPR G    T+  +V   P  ++Y+SC+P +L RD+ ILS   
Sbjct: 359 IIDAKIQA---DAMIIDPPRKGCSKDTIDAIVTIAPKKLVYVSCDPATLARDVKILSDNG 415

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +E +   D FP T H+E   LL +
Sbjct: 416 YKLELVQPVDLFPQTVHVETVALLSK 441


>gi|207343360|gb|EDZ70840.1| YKR056Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 602

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 21/160 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  ++  D+V+ VEI+  SV  A  N  AN V N + +   +++  ++
Sbjct: 455 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFES 514

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                       ID  S    ++ +DPPR G D+  +  + AY    I+YISCN  S  R
Sbjct: 515 ------------IDTPSEN-TSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQAR 561

Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+          + + IE +  FD FP T H+E   ++ R
Sbjct: 562 DVEYFLKETENGSAYQIESIRGFDFFPQTHHVESVCIMKR 601


>gi|326576535|gb|EGE26443.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           CO72]
          Length = 473

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141
           + AL+ ++ A   + P L   + Q       S +++  ++ H + LDD   E   +LR  
Sbjct: 185 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 240

Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190
             AR +Q+ L  +   +   +D  D     LTV     ++  + N           FTQ 
Sbjct: 241 FAARNWQLFLQPKGVDSVHRIDTEDARPTSLTVPPTGGLFYHLPNFDLTYEFSPLDFTQV 300

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246
           N  +N  M++   +     +G+ +L+L+CG GNFSLVLAR       V+ VE ++   E 
Sbjct: 301 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 360

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N  AN + + +     +K+ TQ +  +            + RF  + +DPPRSG  +
Sbjct: 361 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 410

Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
                V AY        I+Y+SCNP +L RD  +++   + +    + D F +T H+E
Sbjct: 411 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 463


>gi|229125816|ref|ZP_04254842.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|229143116|ref|ZP_04271549.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228640389|gb|EEK96786.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228657673|gb|EEL13485.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
          Length = 454

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|193215656|ref|YP_001996855.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC
           35110]
 gi|193089133|gb|ACF14408.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC
           35110]
          Length = 475

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 15/178 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           NSF Q N+   +++ +      K  Q D++ +LYCG G+ S+ ++    +VL +E+   +
Sbjct: 300 NSFFQTNSAQTLNLYQKTREFAKLSQDDIVYDLYCGTGSISIFISDACQKVLGIELVDSA 359

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N V N     +  K+F + +  E E   L D+         +  DPPR+G
Sbjct: 360 IEDAKKNAERNDVKNCAFRMLDLKDFGK-ISPELEAFGLPDV---------VITDPPRAG 409

Query: 304 LDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLAL--FDQFPYTRHME 357
           +    V M+   +   I+Y+SCNP SL RD  +       + L     D FP+T H+E
Sbjct: 410 MHPKAVQMLLRLSPKRIVYVSCNPASLARDGQLFCENGEYQLLEAQPVDMFPHTNHIE 467


>gi|324324527|gb|ADY19787.1| RNA methyltransferase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 459

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 168/382 (43%), Gaps = 44/382 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +++      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226
           + +I   + +        +F Q N    V +  E   AA       +++ YCG G   L 
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTIGLW 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDI 285
           LA     V  +++   ++  AR N   +   N K          +A + E+   + +KD 
Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKY---------EAGKAEQWLPKWVKD- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T H+E  V LVRK
Sbjct: 438 VQPVDMFPHTAHVENVVKLVRK 459


>gi|313632900|gb|EFR99843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
           N1-067]
          Length = 459

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++    S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQA-YPHILYISCNPDSLCR 330
            + E  F +        ++   + VDPPRSG D   +G ++QA    ++Y+SCNP +L R
Sbjct: 366 GKAEDVFPKWMK---EGFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLAR 422

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL++L+  + +  +   D FP T H+E  VLL
Sbjct: 423 DLALLAKKYRVRYMQPVDMFPQTAHVETVVLL 454


>gi|309774722|ref|ZP_07669745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917495|gb|EFP63212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 436

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 15/182 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF Q N+   V +   + +  K     ++E Y G G  SL L      ++ +E  K +V 
Sbjct: 268 SFFQLNSAQAVQLYRTIASMVKEGNELIVEAYSGIGAISLYLKDKAKEIIGIESIKDAVV 327

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   N   +V  +         A  +    ++ + ID+       + VDPPRSGLD
Sbjct: 328 NANQNAKLNGCGHVSFL------CDDAASKLTYLSKKRAIDV-------LVVDPPRSGLD 374

Query: 306 DATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DA +  +      +I+Y+SCNP +L ++L++L   + +E++   D FP+T ++E  V L 
Sbjct: 375 DAMLDCILRSKIKNIVYVSCNPATLGKNLAVLGYRYNVEKIQPIDMFPHTPYVEAVVSLK 434

Query: 364 RK 365
           RK
Sbjct: 435 RK 436


>gi|323343147|ref|ZP_08083378.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463211|gb|EFY08406.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 456

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ +L LA     V  VEI + ++  A+ N   NH+ NV+     +++    
Sbjct: 314 VVDAYCGIGSITLNLADKAKFVYGVEIVEDAIIMAKENAKLNHIENVQFEVGEAEKIMPT 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E       +ID+       + VDPPR GLD   +   + + P  I+Y+SCNP SL +
Sbjct: 374 WVKEG-----IEIDV-------LVVDPPRKGLDPLFIDAAIASKPRRIVYVSCNPISLAK 421

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL S +   + +E++   D FP T H+E  VLL++
Sbjct: 422 DLRSFIDGGYRVEKVQPVDMFPQTTHVETIVLLIK 456


>gi|228906093|ref|ZP_04069982.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           200]
 gi|229042217|ref|ZP_04189971.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
 gi|228727152|gb|EEL78355.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
 gi|228853502|gb|EEM98270.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           200]
          Length = 454

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|228956753|ref|ZP_04118539.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228802941|gb|EEM49773.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 455

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|218895441|ref|YP_002443852.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
 gi|228899050|ref|ZP_04063323.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           4222]
 gi|218544636|gb|ACK97030.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
 gi|228860625|gb|EEN05012.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           4222]
          Length = 454

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|306820595|ref|ZP_07454224.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551326|gb|EFM39288.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 22/225 (9%)

Query: 149 IQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
           IQ I + N T + L  D    Y ++ +T     L ++   NSF Q N      M    L 
Sbjct: 240 IQNINKKN-TNVILSSDNILLYGNDYITEYIDDLKFKIYPNSFFQVNYTQMEKMYNKALD 298

Query: 205 ATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                + D++ +LYCG G  SL+LA+    V  +E+ + S+ +A+ N   N++ NV+ + 
Sbjct: 299 YASIDKDDVVYDLYCGIGTISLLLAKRAKYVYGIEVVQQSITSAKENARENNIENVEFIC 358

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321
              +   +A+ +     + K  DI       I +DP R G +   +  + +     I+YI
Sbjct: 359 GKVENEIKALIK-----KAKSPDI-------IVLDPARKGCEVTVLDTILSVSPKKIVYI 406

Query: 322 SCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP +L RDL IL  S  + +E +  FD F ++ H+E  VLL +
Sbjct: 407 SCNPSTLARDLKILLDSGKYILEEVTPFDLFCHSTHIENVVLLSK 451


>gi|283795951|ref|ZP_06345104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
 gi|291076596|gb|EFE13960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
          Length = 461

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   +  +    RV+ VE+ + +V  A  N   N + N++     +  F   
Sbjct: 315 VLDAYCGIGTIGITASGRAGRVIGVELNRDAVRDAVQNAKRNEIKNIEFYCNDAGRFMSR 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M  + E            R   +F+DPPRSG  +  +    QA P  ++YISC P++L R
Sbjct: 375 MAADGE------------RLDVVFMDPPRSGSTEEFIQAAAQAGPRTVVYISCGPETLAR 422

Query: 331 DLSILSTTHTIERLAL-FDQFPYTRHMECGVLLVRK 365
           DL +        R A   D FP+T H EC V L RK
Sbjct: 423 DLRVFEKKGYKAREAWPVDLFPWTGHCECVVKLERK 458


>gi|169634355|ref|YP_001708091.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           SDF]
 gi|226725375|sp|B0VKL3|RUMA_ACIBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|169153147|emb|CAP02232.1| 23S rRNA (Uracil-5-)-methyltransferase(23S
           rRNA(M-5-U1939)-methyltransferase) [Acinetobacter
           baumannii]
          Length = 463

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 32/191 (16%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKP 242
           FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR       ++ VE ++ 
Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGVIVGVEASEE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+ A  N+  N++       + +  F+Q +         KD   HS+    F  + +DP
Sbjct: 346 MVQRATDNVKRNNL-------VQASFFSQDL--------TKDFSHHSWANQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           PR+G  +    ++Q  P+     I+Y+SCNP +L RD  +L    + +++ A+ D F +T
Sbjct: 391 PRAGAYE----IIQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 446

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 447 EHVESIALFEK 457


>gi|116491644|ref|YP_811188.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
           PSU-1]
 gi|290891253|ref|ZP_06554315.1| hypothetical protein AWRIB429_1705 [Oenococcus oeni AWRIB429]
 gi|116092369|gb|ABJ57523.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
           PSU-1]
 gi|290479217|gb|EFD87879.1| hypothetical protein AWRIB429_1705 [Oenococcus oeni AWRIB429]
          Length = 458

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 159/374 (42%), Gaps = 42/374 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QL  K  ++RQ+     + +L+I  +     P HYR +    +      L    + +
Sbjct: 95  YPAQLEFKRKQIRQLFHKVGIDDLEILPTLGMKNPTHYRNKTVVPVKFQAGKLVTGFYRR 154

Query: 66  QTKERMRI-DYFMPGSLL----------INALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            + + + I DY++    +          +N   I     I  E ++R  + +  Y + Q+
Sbjct: 155 GSHKLVPIEDYYLNDPKIDVVVGIARDVLNDFHISAYNEISREGIVRYLMVRHGYHSGQT 214

Query: 115 DQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
             A+V    H   + +  +E   R+ D      + +    +    ++ LD   +  +  V
Sbjct: 215 MLAVVATKKHLPHEKEIIKEINQRIPDL---TSFLLNYNPKQTNVQLGLDNRVLSGQ-QV 270

Query: 174 AGRTLIYRQIE---NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLA 228
              TL+    E   NSF Q N      +L    A   G++ +  +++ Y G G   L +A
Sbjct: 271 IHDTLLGLDFEIGINSFYQVNPQTTA-VLYTKAAELAGLKSNQLVIDAYSGIGTIGLSIA 329

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R   +V+ VE+  P+VE A+ N+ AN + N + +   + E         +F +  D  + 
Sbjct: 330 RQVRKVIGVEVVVPAVEDAKKNMLANRIENAEYIAADAAE---------QFIKWADAGV- 379

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   +FVDPPR GL    +    V A    +YISCNP +L RD  ++    + I +  
Sbjct: 380 --KPDVVFVDPPRKGLTSDLIQSLGVMAPLKFVYISCNPATLARDAVLIKEQGYRISKAV 437

Query: 346 L-FDQFPYTRHMEC 358
           L  DQFP T H+E 
Sbjct: 438 LPIDQFPQTMHVES 451


>gi|169334084|ref|ZP_02861277.1| hypothetical protein ANASTE_00477 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258801|gb|EDS72767.1| hypothetical protein ANASTE_00477 [Anaerofustis stercorihominis DSM
           17244]
          Length = 450

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 104/215 (48%), Gaps = 25/215 (11%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
           A++ KI   RDY+ E+       L ++    SF Q N  +   +L  V+    G +    
Sbjct: 256 ADEVKIIYGRDYIMEKCL----GLDFKISAFSFFQTNT-LGSEVLYSVVKDFIGEEKSDV 310

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G  + +L+   + V  +EI + ++EAA+ N   N+++N + +          
Sbjct: 311 ILDLYCGTGTITQILSDKANEVYGIEIVEEAIEAAKINAELNNIDNCRFICG-------- 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                  + L+++D    +   I +DPPR+G+    +  + ++     +Y+SC   SL R
Sbjct: 363 -------DVLEEVDKIDVKSDLIILDPPRAGIHPKAIDKIISFKPKKFVYVSCKATSLIR 415

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL   +   + ++++   D FP T H+E  VLL +
Sbjct: 416 DLPFFIEAGYEVDKVRAVDMFPQTGHVETVVLLTK 450


>gi|119475990|ref|ZP_01616342.1| hypothetical protein GP2143_05355 [marine gamma proteobacterium
           HTCC2143]
 gi|119450617|gb|EAW31851.1| hypothetical protein GP2143_05355 [marine gamma proteobacterium
           HTCC2143]
          Length = 458

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 28/189 (14%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           + FTQ N  IN  +    ++W+    K I  D    +CG GNFSL ++    R +  E  
Sbjct: 282 DDFTQVNPAINHRLVALTIKWLQLGEKDIVADF---FCGIGNFSLPISTFVARTVGFEWV 338

Query: 241 KPSVEAARYNIAANHVNNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
              V+ AR N   NH++N   K++ +++         + +FN+               +D
Sbjct: 339 ASMVDKARSNAVFNHIDNCEFKVIDLTADRLVI----DEDFNKA-------------LLD 381

Query: 299 PPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHM 356
           PPR+G +     + ++    I+YISCNP +L RD  IL+   + +  L+L D FP T H 
Sbjct: 382 PPRAGAEKICKQLAESKLERIVYISCNPRTLARDSKILTQGNYQLTELSLADMFPQTVHS 441

Query: 357 ECGVLLVRK 365
           E   L  R 
Sbjct: 442 EVVALFTRS 450


>gi|229077678|ref|ZP_04210308.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
 gi|228705619|gb|EEL57975.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
          Length = 454

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|206967682|ref|ZP_03228638.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
 gi|206736602|gb|EDZ53749.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
          Length = 454

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|56962873|ref|YP_174600.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
 gi|56909112|dbj|BAD63639.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
          Length = 458

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+    V  VEI   +++ A+ N   N + N       ++E    
Sbjct: 314 VIDAYCGIGTISLFLAKKARHVYGVEIVPEAIKDAKRNAKLNQITNATFAVGEAEEVI-- 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
               R  ++  D D+       I VDPPR G D+A +  M++  P  I+Y+SCNP +L R
Sbjct: 372 ---PRWHDQGIDADV-------IVVDPPRKGCDEALLRTMMEMKPKRIVYVSCNPGTLAR 421

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           DL IL    +  E +   D FP T H+E    LV
Sbjct: 422 DLRILEDGGYKTEEVTPVDMFPQTTHVEAVARLV 455


>gi|229107991|ref|ZP_04237618.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
 gi|228675494|gb|EEL30711.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
          Length = 454

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|28199269|ref|NP_779583.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa
           Temecula1]
 gi|32130010|sp|Q87BR3|RUMA_XYLFT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|28057375|gb|AAO29232.1| RNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|307578259|gb|ADN62228.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 443

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
            ++R ++  F Q N G+N  M+   L       G+ +L+L+CG GNF+L LAR    V+ 
Sbjct: 266 FVFRPLD--FIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVG 323

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     VE AR N   N + N +        F   + R++     +D       F  + 
Sbjct: 324 VEGDIGLVERARENARRNGLGNAEF-------FVADLTRDQ-----RDAPWMRQGFDKLL 371

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L       +  +   D FP+T
Sbjct: 372 LDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHT 431

Query: 354 RHME 357
            H+E
Sbjct: 432 AHVE 435


>gi|295090952|emb|CBK77059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium cf.
           saccharolyticum K10]
          Length = 461

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   +  +    RV+ VE+ + +V  A  N   N + N++     +  F   
Sbjct: 315 VLDAYCGIGTIGITASGRAGRVIGVELNRDAVRDAVQNAKRNEIKNIEFYCNDAGRFMSR 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M  + E            R   +F+DPPRSG  +  +    QA P  ++YISC P++L R
Sbjct: 375 MAADGE------------RLDVVFMDPPRSGSTEEFIQAAAQAGPRTVVYISCGPETLAR 422

Query: 331 DLSILSTTHTIERLAL-FDQFPYTRHMECGVLLVRK 365
           DL +        R A   D FP+T H EC V L RK
Sbjct: 423 DLRVFEKKGYKAREAWPVDLFPWTGHCECVVKLERK 458


>gi|229009816|ref|ZP_04167036.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
 gi|228751434|gb|EEM01240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
          Length = 465

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 17/155 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + GD  +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     +
Sbjct: 316 LNGDETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEA 375

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCN 324
           +       +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCN
Sbjct: 376 EVVIPKWYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCN 423

Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
           P +L RDL +L    +  + +   D FP+T H+EC
Sbjct: 424 PATLARDLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|30018572|ref|NP_830203.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579]
 gi|296501148|ref|YP_003662848.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
 gi|50401538|sp|Q814A6|Y364_BACCR RecName: Full=Uncharacterized RNA methyltransferase BC_0364
 gi|29894113|gb|AAP07404.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579]
 gi|296322200|gb|ADH05128.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
          Length = 458

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|71276134|ref|ZP_00652414.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Dixon]
 gi|71900087|ref|ZP_00682230.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1]
 gi|71163052|gb|EAO12774.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Dixon]
 gi|71730169|gb|EAO32257.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1]
          Length = 468

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
            ++R ++  F Q N G+N  M+   L       G+ +L+L+CG GNF+L LAR    V+ 
Sbjct: 291 FVFRPLD--FIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVG 348

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     VE AR N   N + N +        F   + R++     +D       F  + 
Sbjct: 349 VEGDIGLVERARENARRNGLGNAEF-------FVADLTRDQ-----RDAPWMRQGFDKLL 396

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L       +  +   D FP+T
Sbjct: 397 LDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHT 456

Query: 354 RHME 357
            H+E
Sbjct: 457 AHVE 460


>gi|21230734|ref|NP_636651.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66769270|ref|YP_244032.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|23822130|sp|Q8PB48|RUMA_XANCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|81304771|sp|Q4USG1|RUMA_XANC8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|21112328|gb|AAM40575.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574602|gb|AAY50012.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 444

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  AR N   N ++N +     + + TQ  R+     +          F  + 
Sbjct: 325 VEGDAGLVARARENAQRNGLDNAQFY---AADLTQDQRQTAWMRQ---------GFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYT 353
           +DPPRSG  D    + ++ +  I+Y+SC+P SL RD   L        L+    D FP+T
Sbjct: 373 LDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHT 432

Query: 354 RHME 357
            H+E
Sbjct: 433 AHVE 436


>gi|307244221|ref|ZP_07526336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492371|gb|EFM64409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           stomatis DSM 17678]
          Length = 544

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 16/159 (10%)

Query: 210 QGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +GD + ++YCG G  SL LA+  + V  VEI + +++ AR N   N ++N++     ++E
Sbjct: 305 EGDRVFDIYCGIGTISLFLAQKAEFVYGVEIVEDAIKDARLNAKLNGMDNLEFFVGKAEE 364

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD 326
               + +E              +   + VDPPR G D+  +  +V+  P  ++Y+SCNP 
Sbjct: 365 VVPEIYKE------------GKKANVVVVDPPRKGCDERVLDTIVEMEPDRVVYVSCNPS 412

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +L RDL  L    +  E++   D FP++ H+E   LL +
Sbjct: 413 TLARDLRYLEDRGYRCEKVQPVDLFPHSVHVETVALLSK 451


>gi|300118952|ref|ZP_07056663.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1]
 gi|298723568|gb|EFI64299.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1]
          Length = 458

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A+ N A N + N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNDMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|298715093|emb|CBJ27781.1| RNA methyltransferase, TrmA family [Ectocarpus siliculosus]
          Length = 516

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 21/196 (10%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           +V ER  V G    ++  E  F Q N  +  HM+++V+A A +G   +L++ YCG G F 
Sbjct: 326 HVSER--VGGMVFNFKAGE--FFQNNPYVLPHMVDYVVARAKEGGAKNLIDAYCGGGLFC 381

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  +  F++   +EI+  +V+ A  N A N ++N   +  ++             N   +
Sbjct: 382 LSASTSFEKCAGIEISPMAVDCATRNAATNDISNCLFLAGTAS------------NIFAN 429

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTI 341
           +         + VDPPR G D   +G +  +    ++Y+SC+P +  RD   I++  +  
Sbjct: 430 VSFTPSE-TVVIVDPPRKGCDQLFLGQLFKFRPTRLVYVSCDPATQARDAKEIMANGYEA 488

Query: 342 ERLALFDQFPYTRHME 357
             +  FD FP TRH+E
Sbjct: 489 VDIQPFDLFPQTRHIE 504


>gi|291521671|emb|CBK79964.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7]
          Length = 458

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 16/165 (9%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A  G    + +LYCG G  SL +A+   +V  VEI   +++ A+ N A N ++N +    
Sbjct: 304 ANPGPNDVIWDLYCGIGTISLFMAKKAKQVYGVEIVPQAIDDAKRNAAINDIHNAEFYVG 363

Query: 265 SSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYI 321
            ++E   Q   RE          IH+     I VDPPR G D++ +  + Q  P  ++Y+
Sbjct: 364 KAEEVLPQTYEREH---------IHA---DIIVVDPPRKGCDESLLACITQMQPKRVVYV 411

Query: 322 SCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           SC+P +L RDL  L    + ++ +   D F ++ H+E  VLL RK
Sbjct: 412 SCDPATLARDLKYLEERDYKVKEVQCVDMFGHSVHVETVVLLQRK 456


>gi|269115232|ref|YP_003302995.1| hypothetical protein MHO_4570 [Mycoplasma hominis]
 gi|268322857|emb|CAX37592.1| Conserved hypothetical protein, putative RNAmethyltransferase
           [Mycoplasma hominis ATCC 23114]
          Length = 443

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 33/191 (17%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           +LIY QI+    Q N+             TK     ++++Y G G+  + +  +  ++  
Sbjct: 283 SLIYNQIKKFIDQENS-------------TK-----IIDVYSGVGSIGISVCGNDSQLEL 324

Query: 237 VEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +EI K + E A+ NI  N +N   V I+  S+++F    ++E E+          +    
Sbjct: 325 IEINKSACECAKININQNLINPKLVDIINSSAQDFFN--KKEAEY----------FEKSI 372

Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYT 353
           +  DPPR+GL +  + M++    ++Y+SCNP ++ RDL       + IERL  +D FP T
Sbjct: 373 VIFDPPRTGLTNKEINMLEKCNSVIYMSCNPHTMIRDLKYFEEKGYRIERLIPYDMFPQT 432

Query: 354 RHMECGVLLVR 364
            H+E   LL +
Sbjct: 433 YHIEMLSLLKK 443


>gi|89897939|ref|YP_515049.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89331311|dbj|BAE80904.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 401

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 108/207 (52%), Gaps = 20/207 (9%)

Query: 166 YVDERLTVA--GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNG 221
           ++ + LT+   G + ++     SF QP +     ++E +       QG   LL+LYCG G
Sbjct: 205 FIKQTLTLPKDGNSGVFHVRPRSFFQPQSLQGAKIIE-IAKEFMDPQGCETLLDLYCGAG 263

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              ++L+ +  +V+ VEI   +VE+A+ NI  N   ++  V +  ++     RR ++   
Sbjct: 264 TIGIMLSTYVKKVIGVEIVPDAVESAKENILINKKEHLMEVHL--EDVKNFCRRHQD--- 318

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRD-LSILSTT 338
               D+       + +DPPR G+ +  +  +++  P  I+YISCNP    ++  S+LS  
Sbjct: 319 CPPPDV-------VVIDPPRCGMQNKVLKYLLRISPKKIIYISCNPKIQFKECCSLLSAG 371

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + I+++   DQFP++ H+E  +LL RK
Sbjct: 372 YRIKKVQPLDQFPHSPHLENIILLERK 398


>gi|283471167|emb|CAQ50378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 453

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGTGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +LS  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLSEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|153004375|ref|YP_001378700.1| (Uracil-5)-methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152027948|gb|ABS25716.1| (Uracil-5)-methyltransferase [Anaeromyxobacter sp. Fw109-5]
          Length = 482

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           + R   + F Q N G N  ++   L   A  G+  D+LEL+CG GNF+  LA     V A
Sbjct: 304 VQRSRPDVFQQANRGANALLVRAALDLLAPDGL--DVLELHCGAGNFTGPLAARARWVAA 361

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE+  P++E AR ++A     NV+     + +   A  RE   +        + RF    
Sbjct: 362 VEVQGPALELARADLAG--AGNVRFFAGDALKLALAFAREGGPS--------ARRFGAAL 411

Query: 297 VDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTR 354
           +DPPR G       + +   P  +Y+SC+P +  RD+ + + T   +E +   D FP T 
Sbjct: 412 LDPPREGAKGIGPALRELGLPRTVYVSCDPATFARDVRACVETGFRLEAVQPVDMFPQTH 471

Query: 355 HMECGVLLV 363
           H+E   LLV
Sbjct: 472 HVEAVALLV 480


>gi|332710474|ref|ZP_08430421.1| 23S rRNA m(5)U-1939 methyltransferase [Lyngbya majuscula 3L]
 gi|332350805|gb|EGJ30398.1| 23S rRNA m(5)U-1939 methyltransferase [Lyngbya majuscula 3L]
          Length = 461

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 19/154 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G F+L LA+   + + +E+   SVE A  N   N + NVK    S  +    
Sbjct: 321 VVDAYCGIGTFTLPLAQQVSQAIGIEVQAASVEQAEQNALINGITNVKFQAGSVDQLLP- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
                +     DI         I +DPPR G   A + ++ Q  P  I+YISCNP +L R
Sbjct: 380 -----QLTIAPDI---------ILLDPPRKGCSPAVIDILRQVAPKRIVYISCNPATLAR 425

Query: 331 DLSI--LSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL +  L+  + +  +   D FP T H+EC   L
Sbjct: 426 DLKLLCLNGDYQLTHIQPADFFPQTSHVECAAFL 459


>gi|330980189|gb|EGH78360.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 427

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 21/184 (11%)

Query: 185 NSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
             F Q NA +N  M+E    W LA  K  +  +++L+CG GNF+L LA     V+AVE  
Sbjct: 255 GDFIQVNAAVNTAMIEQAMQW-LAPAKDER--VMDLFCGLGNFALPLAGLAREVVAVEGV 311

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              VE A  N  +N ++NV+  +    + +Q          L   D  +  F  + +DPP
Sbjct: 312 ATMVERAAVNAMSNDLHNVQFFQ---ADLSQP---------LAHADWAAEGFSAVLLDPP 359

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358
           R G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP T H+E 
Sbjct: 360 RDGAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEA 419

Query: 359 GVLL 362
             L 
Sbjct: 420 MALF 423


>gi|320535233|ref|ZP_08035358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Treponema phagedenis
           F0421]
 gi|320147924|gb|EFW39415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Treponema phagedenis
           F0421]
          Length = 537

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 98/188 (52%), Gaps = 17/188 (9%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEI 239
           R  +NSF Q N+ +   + +  +   + I+ D ++E Y G G  + V A+ F +V A+EI
Sbjct: 270 RASQNSFMQVNSEVRDLLYKDAINIIEEIKTDTIIEGYSGIGIMTNVFAKQFKKVYAIEI 329

Query: 240 AKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
              +VE A YN   N+ NN+K     ++KE ++ +   +E             +  +F D
Sbjct: 330 DPEAVEDAEYNRKLNNNNNIKNICGDAAKEISKIINAVKE------------NYALVF-D 376

Query: 299 PPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           PPR GLD   +  ++ + P  I YISC+  +L RD S L   +TIE+L  +D FP T H+
Sbjct: 377 PPRKGLDKKIIDAIKKSKPKTIFYISCDSATLARDYSYLKDLYTIEKLLCYDMFPQTSHV 436

Query: 357 ECGVLLVR 364
           E   LL +
Sbjct: 437 ETVALLSK 444


>gi|302388260|ref|YP_003824082.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
 gi|302198888|gb|ADL06459.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
          Length = 454

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 17/190 (8%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAV 237
           YR    SF Q N  +    L     A  G+ G   + +LYCG G  SL LA+   +V  V
Sbjct: 276 YRISPLSFYQVNP-VQTEKLYGTALAYAGLTGVETVWDLYCGIGTISLFLAQKAKKVYGV 334

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI   ++E AR N   N ++NV+     ++E              +  + H      I V
Sbjct: 335 EIVPQAIEDARENARLNGLDNVEFFVGKAEEVLP-----------EQYEKHQVYADVIVV 383

Query: 298 DPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTR 354
           DPPR G D+A +  +V+  P  ++Y+SC+  +L RD+  L+   + +E++   D FP   
Sbjct: 384 DPPRKGCDEACLNTIVKMGPKRVVYVSCDSATLARDMKYLAENGYKVEKVRGCDMFPQAL 443

Query: 355 HMECGVLLVR 364
           H E   L+V+
Sbjct: 444 HTEVCCLIVK 453


>gi|266619611|ref|ZP_06112546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
 gi|288868833|gb|EFD01132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
          Length = 458

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 17/191 (8%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237
           YR    SF Q N  +    L        G+ G   + +LYCG G  SL LA+   +V  V
Sbjct: 278 YRISPLSFYQVNP-VQTEKLYSTALEYAGLTGGETVWDLYCGIGTISLFLAQKAKKVYGV 336

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI   +++ AR N   N + NV+     ++E    + RE E N++            I V
Sbjct: 337 EIVPQAIDDARENARINGMENVEFFVGKAEE---VLPREYEKNQV--------YADVIVV 385

Query: 298 DPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354
           DPPR G D+  +  +V+  P  ++Y+SC+  +L RD+  L+   + + ++   D FP++ 
Sbjct: 386 DPPRKGCDEVCLDTIVKMGPKRVVYVSCDSATLARDMKYLAERGYEVVKVRGCDMFPHST 445

Query: 355 HMECGVLLVRK 365
           H EC V L RK
Sbjct: 446 HTECCVKLERK 456


>gi|188992421|ref|YP_001904431.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167734181|emb|CAP52389.1| RNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 470

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 293 LAFRPLD--FIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVREVVG 350

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  AR N   N ++N +     + + TQ  R+     +          F  + 
Sbjct: 351 VEGDAGLVARARENAQRNGLDNAQFY---AADLTQDQRQTAWMRQ---------GFDKLL 398

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYT 353
           +DPPRSG  D    + ++ +  I+Y+SC+P SL RD   L        L+    D FP+T
Sbjct: 399 LDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHT 458

Query: 354 RHME 357
            H+E
Sbjct: 459 AHVE 462


>gi|326561885|gb|EGE12220.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           7169]
 gi|326563319|gb|EGE13586.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           46P47B1]
 gi|326565973|gb|EGE16134.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           103P14B1]
 gi|326568893|gb|EGE18962.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           BC1]
 gi|326575378|gb|EGE25303.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           101P30B1]
          Length = 497

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141
           + AL+ ++ A   + P L   + Q       S +++  ++ H + LDD   E   +LR  
Sbjct: 209 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 264

Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190
             AR +Q+ L  +   +   +D  D     LTV     ++  + N           FTQ 
Sbjct: 265 FAARNWQLFLQPKGVDSVHRIDTEDARPTSLTVPPTGGLFYHLPNFDLTYEFSPLDFTQV 324

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246
           N  +N  M++   +     +G+ +L+L+CG GNFSLVLAR       V+ VE ++   E 
Sbjct: 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 384

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N  AN + + +     +K+ TQ +  +            + RF  + +DPPRSG  +
Sbjct: 385 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 434

Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
                V AY        I+Y+SCNP +L RD  +++   + +    + D F +T H+E
Sbjct: 435 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 487


>gi|326578005|gb|EGE27869.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           O35E]
          Length = 497

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 136/298 (45%), Gaps = 42/298 (14%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDA 141
           + AL+ ++ A   + P L   + Q       S +++  ++ H + LDD   E   +LR  
Sbjct: 209 LKALITDLNARDSI-PQLEIAMGQTLPHVPDSIKSVAVIVRHMQELDD---EDLAKLRQF 264

Query: 142 LHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN----------SFTQP 190
             AR +Q+ L  +   +   +D  D     LTV     ++  + N           FTQ 
Sbjct: 265 FAARNWQLFLQPKGVDSVHRIDTEDARPTSLTVPPTGGLFYHLPNFDLTYEFSPLDFTQV 324

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246
           N  +N  M++   +     +G+ +L+L+CG GNFSLVLAR       V+ VE ++   E 
Sbjct: 325 NLSVNQKMMDLASSLLNLQKGERVLDLFCGLGNFSLVLARQVGESGFVVGVEGSEQMTER 384

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N  AN + + +     +K+ TQ +  +            + RF  + +DPPRSG  +
Sbjct: 385 AKMNACANGIAHTEFY---AKDLTQDLSDQ-------PWATGNNRFDALLIDPPRSGAWE 434

Query: 307 ATVGMVQAY------PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
                V AY        I+Y+SCNP +L RD  +++   + +    + D F +T H+E
Sbjct: 435 -----VMAYLPKFNAKRIVYVSCNPVTLARDTKALIEAGYRLTHAGVMDMFSHTGHVE 487


>gi|194707300|gb|ACF87734.1| unknown [Zea mays]
          Length = 360

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 34/215 (15%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           Y    +T   R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG G
Sbjct: 159 YGKPNITEMLRGLAFQISANSFFQTNTK-QADVLYKLIEDSAGLKGDGSEIVLDLFCGTG 217

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  AR    +   E+   ++E AR N   N +NN   V+    +  ++  +E     
Sbjct: 218 TIGLTFARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFVQGDLNKINESFGKE----- 272

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338
               DI       I  DP R G+    +     V+A P I+Y+SCNP +  RDL  L   
Sbjct: 273 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 322

Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362
           H +E   L            D FP+T H+EC  LL
Sbjct: 323 HGVEEKDLRGFYELKSVIPVDMFPHTPHIECVCLL 357


>gi|156846955|ref|XP_001646363.1| hypothetical protein Kpol_2001p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117039|gb|EDO18505.1| hypothetical protein Kpol_2001p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 589

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 21/160 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  ++  D+V+ VEI+  SV  A  N   N ++N + +          
Sbjct: 442 LVDCYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKNNGIDNCRFI---------V 492

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
            + E+ F   + ID+   R  ++ +DPPR G D+  +  + +Y    I+YISCN  S  R
Sbjct: 493 GKAEKLF---ESIDVPKDR-TSVILDPPRKGCDELFLTQLSSYFPAKIVYISCNVHSQAR 548

Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+          + + IE L  FD FP T H+E   +L R
Sbjct: 549 DVEFFLKNTENGSHYKIESLRGFDFFPQTHHVESVCVLSR 588


>gi|218281544|ref|ZP_03487973.1| hypothetical protein EUBIFOR_00538 [Eubacterium biforme DSM 3989]
 gi|218217333|gb|EEC90871.1| hypothetical protein EUBIFOR_00538 [Eubacterium biforme DSM 3989]
          Length = 457

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +E Y G G  SL +      ++ VE  + +V+ A  N   NH +NV  +   +      +
Sbjct: 292 VEAYSGIGAISLFVKDKAQEIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHL 351

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
            +E      KD+D       T+ VDPPRSGLDD     +       ++Y+SCNP +L +D
Sbjct: 352 VQE------KDVD-------TLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKD 398

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L +L   + I ++   D F  T H+E   LLVR
Sbjct: 399 LGVLKKEYRIVKIQPVDMFSQTPHVESVTLLVR 431


>gi|149278953|ref|ZP_01885087.1| putative RNA methyltransferase [Pedobacter sp. BAL39]
 gi|149230232|gb|EDM35617.1| putative RNA methyltransferase [Pedobacter sp. BAL39]
          Length = 487

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 24/207 (11%)

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218
           E LT AGR  I+ ++          SF Q N+    H L  +     G  GD L  +LY 
Sbjct: 278 EVLTYAGRDHIFEEMNGLKFKIGAKSFYQTNSN-QAHELYKITKEFAGFSGDELVYDLYT 336

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +  +AR   +V+ VE    ++E A++N   N + N        K+        R+
Sbjct: 337 GAGTIANFVARSVKQVVGVEYVPTAIEDAKFNSKLNGIENTIFYAGDMKDILT-----RD 391

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILS 336
           F     I  H  +   +  DPPR+G+    V   +      I+Y+SCN  +  RDL++L 
Sbjct: 392 F-----IAEHG-KPDVVITDPPRAGMHADVVERLLEMEAEKIVYVSCNAATQARDLALLK 445

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLV 363
             + + R+   D FP+T+H+E  VLL 
Sbjct: 446 EKYEVTRIKPVDMFPHTQHVENVVLLT 472


>gi|71898365|ref|ZP_00680538.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1]
 gi|182681995|ref|YP_001830155.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa M23]
 gi|71731888|gb|EAO33946.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1]
 gi|182632105|gb|ACB92881.1| RNA methyltransferase, TrmA family [Xylella fastidiosa M23]
          Length = 468

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
            ++R ++  F Q N G+N  M+   L       G+ +L+L+CG GNF+L LAR    V+ 
Sbjct: 291 FVFRPLD--FIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVG 348

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     VE AR N   N + N +        F   + R++     +D       F  + 
Sbjct: 349 VEGDIGLVERARENARRNGLGNAEF-------FVADLTRDQ-----RDAPWMRQGFDKLL 396

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L       +  +   D FP+T
Sbjct: 397 LDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHT 456

Query: 354 RHME 357
            H+E
Sbjct: 457 AHVE 460


>gi|331005378|ref|ZP_08328762.1| RNA methyltransferase, TrmA family [gamma proteobacterium IMCC1989]
 gi|330420832|gb|EGG95114.1| RNA methyltransferase, TrmA family [gamma proteobacterium IMCC1989]
          Length = 493

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 30/221 (13%)

Query: 167 VDERLTVA---GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           VD RL         L++R     F Q N  IN  M+E  +A       ++ ++LYCG GN
Sbjct: 229 VDPRLEYVLPLASPLLFRFHPQDFIQSNPSINQKMVEQAIALLAPQSHEIVMDLYCGIGN 288

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV----------KIVRMSSKEFTQ- 271
           FSL LA H   VLAVE  +     A  N   N +NNV          K++R S   + Q 
Sbjct: 289 FSLPLALHAKHVLAVEGVEAMTIRAADNAHCNGINNVTFITQDLSQPKLLRASVSAYCQK 348

Query: 272 -------AMRREREFNRLKDIDIHSYR------FKTIFVDPPRSGLDDATVGMVQAYPH- 317
                  A    +       +D  + +         + +DPPR+G       + +  P  
Sbjct: 349 QDAFQSAAQPITQSITSTAQVDSSTKKPAKQGVIDALLLDPPRAGAKTICENIAELLPQR 408

Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           I+Y+SC+  +  RD  +L    + +  L + D FP T H+E
Sbjct: 409 IVYVSCDSSTFARDAGLLVDNGYRLSTLGIMDMFPQTSHVE 449


>gi|253988311|ref|YP_003039667.1| 23S rRNA 5-methyluridine methyltransferase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779761|emb|CAQ82922.1| 23S rRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica]
          Length = 443

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 25/190 (13%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           F Q N  +N  M    +EW+      +Q +  +L+L+CG GNF+L +AR    V+ VE  
Sbjct: 270 FIQVNETVNQQMVAQAMEWL-----DLQPNDRVLDLFCGMGNFTLPIARKVQAVVGVEGV 324

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V   +YN   N+++N+        E  +A   ++ + +L         F  + +DP 
Sbjct: 325 ATLVANGQYNAKLNNLDNISFYH----ENLEANIHQQPWAKLG--------FNKVLLDPA 372

Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMEC 358
           R+G       +V+  P  ++Y+SCNP +L RD  ++L   + I  + + D FP+T H+E 
Sbjct: 373 RAGAAGVMSHIVKLAPEKVVYVSCNPTTLARDSKTLLEAGYHIISVRMLDMFPHTGHLES 432

Query: 359 GVLLVRKPSG 368
            VL  R   G
Sbjct: 433 MVLFSRIDCG 442


>gi|229021911|ref|ZP_04178475.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
 gi|228739383|gb|EEL89815.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
          Length = 465

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|226323301|ref|ZP_03798819.1| hypothetical protein COPCOM_01073 [Coprococcus comes ATCC 27758]
 gi|225208491|gb|EEG90845.1| hypothetical protein COPCOM_01073 [Coprococcus comes ATCC 27758]
          Length = 455

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 104/234 (44%), Gaps = 25/234 (10%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           +L   LH     +  + +   TKI   +DY  E L      L ++    SF Q N+ +  
Sbjct: 240 KLAGILHTTNNSLADVVKDEGTKILYGQDYFYEELL----GLKFKITPFSFFQTNS-LGA 294

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +L     +  G   D  + +LY G G  + +LA    +V+ VEI + +VEAA+ N A N
Sbjct: 295 EVLYEAARSYIGETKDKVIFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKENAALN 354

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++N                     + LK ID        I +DPPR G+    +  +  
Sbjct: 355 GLDNCTFWAG---------------DVLKVIDDLGEVPDLIVLDPPRDGVHPKALEKIID 399

Query: 315 Y--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +    ++YI+C P SL RDL +L    + +ER+   D FP T H+E   LL RK
Sbjct: 400 FGVERMVYIACKPTSLARDLELLQGRGYQVERIGCVDLFPSTYHVETVCLLSRK 453


>gi|256028670|ref|ZP_05442504.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. D11]
 gi|289766583|ref|ZP_06525961.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D11]
 gi|289718138|gb|EFD82150.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D11]
          Length = 456

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   +++++   +V A+EI K + E        N + N++ +  +       
Sbjct: 308 IVDAYSGTGTIGMIMSKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAV------ 361

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330
              E+E  +L +   ++ +  TI  DPPR GL+ + +  V       ++YISCNP +  R
Sbjct: 362 ---EKELVKLIN---NNQKIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFAR 415

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMEC 358
           D+ + S   + +++L   D FP T H+EC
Sbjct: 416 DIKLFSEKGYVLKKLQAVDMFPQTSHIEC 444


>gi|225376462|ref|ZP_03753683.1| hypothetical protein ROSEINA2194_02104 [Roseburia inulinivorans DSM
           16841]
 gi|225211838|gb|EEG94192.1| hypothetical protein ROSEINA2194_02104 [Roseburia inulinivorans DSM
           16841]
          Length = 475

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 11/197 (5%)

Query: 174 AGRTLIYRQIENSFTQ--PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
            G+ + Y     SF Q  P     ++ L    A   G +  + +LYCG G  SL LA   
Sbjct: 283 TGKAISYHISPQSFYQVNPEQTEKLYSLALEYAGLTGKE-SVWDLYCGIGTISLFLAGKA 341

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V  VEI   ++  A+ N   N  +N +     ++E       E + N   D+ +H   
Sbjct: 342 GHVYGVEIVPQAIADAKDNAKRNGFSNTEFFVGKAEEVLPEFYAEHK-NEKTDM-LHP-- 397

Query: 292 FKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348
              I VDPPR G D+  +   ++     I+Y+SC+  +L RDL +L+   + ++R+   D
Sbjct: 398 -DVIVVDPPRKGCDEKCLETILLMKPERIVYVSCDSATLARDLKVLAEGGYEVKRVRAVD 456

Query: 349 QFPYTRHMECGVLLVRK 365
           QF +T H+EC  LL RK
Sbjct: 457 QFAHTTHVECVTLLQRK 473


>gi|262158318|ref|ZP_06029435.1| RNA methyltransferase TrmA family [Vibrio cholerae INDRE 91/1]
 gi|262030000|gb|EEY48647.1| RNA methyltransferase TrmA family [Vibrio cholerae INDRE 91/1]
          Length = 315

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+
Sbjct: 177 MWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 236

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                E                + V+PPR GL       ++A    +ILY SCNP ++ +
Sbjct: 237 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVK 281

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D++ LS+   I R+  FD FP+T H E   LLVRK
Sbjct: 282 DIAELSSYQMI-RVQWFDMFPHTDHAEVLTLLVRK 315


>gi|229131321|ref|ZP_04260222.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|228652142|gb|EEL08078.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
          Length = 465

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|226494722|ref|NP_001143116.1| hypothetical protein LOC100275594 [Zea mays]
 gi|224031061|gb|ACN34606.1| unknown [Zea mays]
          Length = 558

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 34/215 (15%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           Y    +T   R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG G
Sbjct: 357 YGKPNITEMLRGLAFQISANSFFQTNTK-QADVLYKLIEDSAGLKGDGSEIVLDLFCGTG 415

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  AR    +   E+   ++E AR N   N +NN   V+    +  ++  +E     
Sbjct: 416 TIGLTFARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFVQGDLNKINESFGKE----- 470

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338
               DI       I  DP R G+    +     V+A P I+Y+SCNP +  RDL  L   
Sbjct: 471 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 520

Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362
           H +E   L            D FP+T H+EC  LL
Sbjct: 521 HGVEEKDLRGFYELKSVIPVDMFPHTPHIECVCLL 555


>gi|228950875|ref|ZP_04112998.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228808804|gb|EEM55300.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 454

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|229015714|ref|ZP_04172696.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
 gi|228745571|gb|EEL95591.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
          Length = 458

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|195127973|ref|XP_002008441.1| GI11815 [Drosophila mojavensis]
 gi|193920050|gb|EDW18917.1| GI11815 [Drosophila mojavensis]
          Length = 597

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 20/187 (10%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           AG +V   + +  A    +  +L++ CG G  +L  A+H  +VL VEI   +++ A +N 
Sbjct: 391 AGADVLYQQAIDLAAPNQETIMLDICCGTGTIALAFAKHCKQVLGVEIVPDAIKDAEHNA 450

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRSGLDDATV 309
             N + N K    ++ ++ ++M RE  + +   K ID+         VDPPR+GL   ++
Sbjct: 451 ETNGIKNCKFFTGNADDYIKSMVREAVYGQEPGKPIDL------IAVVDPPRAGLHTRSI 504

Query: 310 GMVQAYPHI---LYISCNPDSLCRDLSILSTTHTIE---------RLALFDQFPYTRHME 357
             +++   I   +Y+SCNP+S  R+   L+   + +              D FP+T H E
Sbjct: 505 AAIRSASDIKRLVYVSCNPNSAKRNFIELARPESKQYKGEPFYPKTAVAVDMFPHTTHTE 564

Query: 358 CGVLLVR 364
             +L  R
Sbjct: 565 LVILFER 571


>gi|315224184|ref|ZP_07866024.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314945917|gb|EFS97926.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 471

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 26/216 (12%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +   G   IY ++E         SF Q N+    + L  V      ++GD L
Sbjct: 265 DAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSA-QAYKLYQVARNFADLKGDEL 323

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271
             +LY G G  +  +A+   +V+ VE    ++  A+ N  AN + NV       K  F  
Sbjct: 324 VYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAITDAKDNAFANGIENVTFYVGDMKNIFND 383

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329
               E   N   D+         I  DPPR G+  D    ++Q  P  I+Y+SCN  +  
Sbjct: 384 TFIEE---NGTPDV---------IITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSATQA 431

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDLS+L  T+ + ++   D FP T H+E  VLL ++
Sbjct: 432 RDLSLLDVTYKVTKVQPVDMFPQTYHVENVVLLEKR 467


>gi|47569584|ref|ZP_00240262.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
 gi|47553767|gb|EAL12140.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
          Length = 458

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|329117144|ref|ZP_08245861.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parauberis NCFD 2020]
 gi|326907549|gb|EGE54463.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parauberis NCFD 2020]
          Length = 451

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 156/385 (40%), Gaps = 52/385 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + +         EP HYR + +F     G  +   +
Sbjct: 90  YPKQLVFKTDVIRQALKKFKPEGYESYPIRETLGMDEPWHYRAKLQFQTRQFGGKIRAGL 149

Query: 63  FDQQTKERMRIDYFM----PGSLLINALM---------------IEMMATIRLEPLLRAK 103
           F + +   + I+  +       L+IN+++               I+ + T+ +   + +K
Sbjct: 150 FAENSHHLVTIENCLVQDKDTQLVINSIVKLLDKHKLPIFNERKIDGLRTVMIRKAVASK 209

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             Q+  +TS++      L     ++D  +E    +  AL+  K +   I     T+I   
Sbjct: 210 KIQVILITSKA------LRLTDFINDLVKEHPQIMTIALNHNKSKSSDI-YGESTEIIWG 262

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
            D ++E +     +L  R    +F Q N      + + +  A +    D +++ YCG G 
Sbjct: 263 EDKIEEEVLDYQFSLSPR----AFYQLNPKQTQVLYQEIKNALQVTATDHIIDAYCGVGT 318

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
                A     +  ++I   ++  A+ N     + N       ++E      +       
Sbjct: 319 IGFAFANQVASIRGMDIVPEAIADAKQNAQDLAIVNTLYETGKAEEIIPKWYQS------ 372

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHT 340
                  YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + 
Sbjct: 373 ------GYRADAIIVDPPRTGLDDKLLQTIITYQPEKMVYVSCNTSTLARDLVSLTKVYK 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +E +   D FP+T   E  V L +K
Sbjct: 427 VEYIQSVDMFPHTARTEAVVKLTKK 451


>gi|229159469|ref|ZP_04287487.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
 gi|228624040|gb|EEK80848.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
          Length = 465

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|229028174|ref|ZP_04184315.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
 gi|228733122|gb|EEL83963.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
          Length = 465

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|163938323|ref|YP_001643207.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|163860520|gb|ABY41579.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis
           KBAB4]
          Length = 458

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|322517378|ref|ZP_08070253.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
           ATCC 49124]
 gi|322124075|gb|EFX95628.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
           ATCC 49124]
          Length = 451

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 157/386 (40%), Gaps = 52/386 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61
           +Y++QL  K D L Q +  F+  N + +         +P HYR + +F     G  +   
Sbjct: 88  RYDKQLEFKTDLLGQALKKFKPANFESYEIRQTIGMEQPQHYRAKLQFQTRSFGGSVKAG 147

Query: 62  MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102
           +F + +   + ID  +    L  A+M                   I  + T+ +   L +
Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQAMMNKVTSLLDKYKLPIYNERKISGIRTVMIRRALGS 207

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              Q+ ++TS+S  ++  L+    L   + E      +  +++  +I       +T+I  
Sbjct: 208 NQVQLIFVTSKS-VSLTKLVKELTL--RYPEIVTVAINYNYSKSSEIY----GQETEIIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            +D + E +      L  R    +F Q N      +    + A +  + + L++ YCG G
Sbjct: 261 GQDTIQEEVLDYNFALSPR----AFYQLNPKQTEVLYSQAVEALEVDKDEHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A     +  ++I   ++E AR N  +  + N       +++      +E     
Sbjct: 317 TIGLAFANKVKSIRGMDIIPEAIEDARKNAKSLGLGNTHYEVGKAEDIIPRWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILDYTPEKMVYVSCNVSTLARDLVSLAKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|258648401|ref|ZP_05735870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella tannerae
           ATCC 51259]
 gi|260851571|gb|EEX71440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella tannerae
           ATCC 51259]
          Length = 473

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 26/206 (12%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221
           T +G   IY Q+E+        SF Q N+      L  V+     + G+  + +LY G G
Sbjct: 279 TYSGTDCIYEQMEDLQFKIGPKSFYQTNSE-QAFTLYKVVREFANLSGNEYVYDLYTGTG 337

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  +A    RV+ +E    +++ A+ N   N+++N++      K+             
Sbjct: 338 TIANFIAGKAKRVIGIEYVPEAIKDAKENAVLNNLDNIQFFAGDMKDI------------ 385

Query: 282 LKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338
           L D  +  Y R   I  DPPR+G+ +  +  +   A   I+Y+SCNP +  RD+S+LST 
Sbjct: 386 LTDDFVALYGRPDVIITDPPRAGMHNDVISTILFAAPKRIVYVSCNPATQARDVSLLSTD 445

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + I ++   D FP T H+E  +L+ R
Sbjct: 446 YHITKVQPVDMFPQTHHVENVLLMER 471


>gi|229095036|ref|ZP_04226032.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
 gi|229113989|ref|ZP_04243415.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228669448|gb|EEL24864.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228688366|gb|EEL42248.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
          Length = 458

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|229176912|ref|ZP_04304308.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
 gi|228606585|gb|EEK64010.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
          Length = 454

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|256820983|ref|YP_003142262.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM
           7271]
 gi|256582566|gb|ACU93701.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM
           7271]
          Length = 471

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 96/216 (44%), Gaps = 26/216 (12%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +   G   IY ++E         SF Q N+    + L  V      ++GD L
Sbjct: 265 DAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSA-QAYKLYQVARNFADLKGDEL 323

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271
             +LY G G  +  +A+   +V+ VE    ++  A+ N  AN + NV       K  F  
Sbjct: 324 VYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKDNAFANGIENVTFYVGDMKNIFND 383

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329
               E   N   D+         I  DPPR G+  D    ++Q  P  I+Y+SCN  +  
Sbjct: 384 TFIEE---NGTPDV---------IITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSATQA 431

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDLS+L  T+ + ++   D FP T H+E  VLL ++
Sbjct: 432 RDLSLLDVTYKVTKVQPVDMFPQTYHVENVVLLEKR 467


>gi|229165298|ref|ZP_04293085.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
 gi|228618123|gb|EEK75161.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
          Length = 459

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|291531353|emb|CBK96938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
           70/3]
          Length = 383

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 16/190 (8%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
           +R   +SF Q N      + ++ + A K  + D LL+ Y G G   ++ + +  +V  +E
Sbjct: 204 FRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIGTIGIIASDYVKQVQGIE 263

Query: 239 IAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
               +V  A  N   N +  N+   R  + EF +   +         +  H   +  + +
Sbjct: 264 YNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKTK---------LGTH---YDAVIL 311

Query: 298 DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355
           DP R+G D   +  +++  P  I+YISCNP +  RDL  L+  +T+  +  FD FP+TRH
Sbjct: 312 DPARTGADRKFLNSLLKIAPERIVYISCNPATQARDLKTLTKKYTVTDIQPFDMFPHTRH 371

Query: 356 MECGVLLVRK 365
           +EC V + RK
Sbjct: 372 VECVVAMSRK 381


>gi|312112309|ref|YP_003990625.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1]
 gi|311217410|gb|ADP76014.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1]
          Length = 459

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 15/157 (9%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           AA  G +  +++ YCG G   L LA+    +  +++   ++E A+ N   +   N   V 
Sbjct: 308 AALTGTE-KVVDAYCGVGTIGLWLAKDAGEIRGMDVIPEAIEDAKKNAKKHGFANATYVS 366

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYI 321
             ++       +E             ++   I VDPPR+G D+  +  + +  P  I+Y+
Sbjct: 367 GKAEALLPKWVKE------------GWKPDVIVVDPPRTGCDEQLLKTILKVKPQRIVYV 414

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           SCNP SL RD+ +LS  + ++ +   D FP+T H+EC
Sbjct: 415 SCNPSSLARDIDVLSKFYKVDYIQPVDMFPHTAHVEC 451


>gi|229055159|ref|ZP_04195586.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
 gi|228721151|gb|EEL72681.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
          Length = 465

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|229068074|ref|ZP_04201382.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
 gi|228715082|gb|EEL66949.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
          Length = 454

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P  ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|139437219|ref|ZP_01771379.1| Hypothetical protein COLAER_00358 [Collinsella aerofaciens ATCC
           25986]
 gi|133776866|gb|EBA40686.1| Hypothetical protein COLAER_00358 [Collinsella aerofaciens ATCC
           25986]
          Length = 442

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 22/184 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N      ++E V+ A    + +L ++LYCG G F+L LAR  D V AVE   P+V
Sbjct: 275 SFFQVNTKGAEILIELVMEALDPQEDELAVDLYCGAGTFTLPLARRCDFVAAVEAYGPAV 334

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
              R N+  N ++NV ++   +          REF   +D D+       + VDPPR+GL
Sbjct: 335 RDLRRNLEINKLDNVDVIGGDAV---------REFPD-QDADV-------LVVDPPRAGL 377

Query: 305 DDATVGMVQAYP--HILYISCNPDSLCRDLS--ILSTTHTIERLALFDQFPYTRHMECGV 360
               + ++ +     + Y+SC+P +L RDL   +   T +  ++   D FP T H E  V
Sbjct: 378 APEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEGTFSPVKITPVDLFPQTFHCETVV 437

Query: 361 LLVR 364
            L R
Sbjct: 438 HLKR 441


>gi|315303628|ref|ZP_07874164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
           F6-596]
 gi|313628001|gb|EFR96598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
           F6-596]
          Length = 453

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 32/218 (14%)

Query: 155 ANKTKICLDRDYVDE-----RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
            N+TK    +D +++     R  ++ R         SF Q N      + +  L A + +
Sbjct: 255 GNRTKTLWGKDIIEDSIHGIRFAISAR---------SFYQVNPLQTEVLYQQALEAAE-L 304

Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G+  +++ YCG G+ SL LA+    V  VEI   +++ AR N A N +NN       ++
Sbjct: 305 TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAALNELNNTTFETGKAE 364

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325
           E   A  +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP
Sbjct: 365 EVIPAWYKA---GIIADV---------LVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNP 412

Query: 326 DSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
            +L RD+ IL+   +  +++   D FP T H+E   +L
Sbjct: 413 GTLARDMQILTEGGYEAKQVQPVDMFPMTTHIEAVTVL 450


>gi|320353045|ref|YP_004194384.1| TrmA family RNA methyltransferase [Desulfobulbus propionicus DSM
           2032]
 gi|320121547|gb|ADW17093.1| RNA methyltransferase, TrmA family [Desulfobulbus propionicus DSM
           2032]
          Length = 432

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 14/154 (9%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+L+CG GNFS+ L     +V  VE  + SV  A +N   +    +   R  S +  QA+
Sbjct: 291 LDLFCGMGNFSIPLGLMGTQVSGVEHNRTSVHWAEHN---SRAAGLTTARFRSADVGQAL 347

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL 332
           R          +     RF  + +DPPR GL      + +  P HIL ISC+P +L RDL
Sbjct: 348 R---------SLVARKARFDCVLLDPPRQGLGKTAALLARLGPQHILSISCDPATLARDL 398

Query: 333 S-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + I+   + I ++   D FP T H+E   LL R 
Sbjct: 399 ALIVQNGYRIVQVTPVDMFPQTHHIETVALLERN 432


>gi|184156902|ref|YP_001845241.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           ACICU]
 gi|332874021|ref|ZP_08441956.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6014059]
 gi|226725374|sp|B2HTF7|RUMA_ACIBC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|183208496|gb|ACC55894.1| SAM-dependent methyltransferase [Acinetobacter baumannii ACICU]
 gi|322506798|gb|ADX02252.1| rumA [Acinetobacter baumannii 1656-2]
 gi|323516667|gb|ADX91048.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737762|gb|EGJ68654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6014059]
          Length = 463

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 32/191 (16%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242
           FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR      +V+ VE ++ 
Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+ A  N   N++       + +  F+Q +         KD   HS+    F  + +DP
Sbjct: 346 MVQRATDNAKRNNL-------VQASFFSQDL--------TKDFSHHSWANQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           PR+G  +    ++Q  P+     I+Y+SCNP +L RD  +L    + +++ A+ D F +T
Sbjct: 391 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 446

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 447 EHVESIALFEK 457


>gi|294637605|ref|ZP_06715885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Edwardsiella tarda
           ATCC 23685]
 gi|291089235|gb|EFE21796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Edwardsiella tarda
           ATCC 23685]
          Length = 440

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 27/180 (15%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    L+W+ A        +L+L+CG GNF+L LAR    V+ VE  + 
Sbjct: 269 FIQVNGQVNQQMVARALDWLDARADE---RVLDLFCGMGNFTLPLARQAQWVVGVEGVRE 325

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V  A+ N   N ++NV+    + +E               D+    +    F  + +DP
Sbjct: 326 LVARAQNNARHNGLSNVEFFHQNLEE---------------DVTCQPWAAQGFDKVLLDP 370

Query: 300 PRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357
            R+G       +V   P  ++Y+SCNP +L RD  + L   + + RL L D FP+T H+E
Sbjct: 371 ARAGAPGVMQHIVHLAPRRVVYVSCNPATLARDSRVLLQGGYQLTRLCLLDMFPHTGHLE 430


>gi|213156040|ref|YP_002318085.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii AB0057]
 gi|226725373|sp|B7I675|RUMA_ACIB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|213055200|gb|ACJ40102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii AB0057]
          Length = 462

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 32/191 (16%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242
           FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR      +V+ VE ++ 
Sbjct: 285 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEE 344

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+ A  N   N++       + +  F+Q +         KD   HS+    F  + +DP
Sbjct: 345 MVQRATDNAKRNNL-------VQASFFSQDL--------TKDFSHHSWANQGFDALLIDP 389

Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           PR+G  +    ++Q  P+     I+Y+SCNP +L RD  +L    + +++ A+ D F +T
Sbjct: 390 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 445

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 446 EHVESIALFEK 456


>gi|239500714|ref|ZP_04660024.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           AB900]
          Length = 463

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 32/191 (16%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242
           FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR      +V+ VE ++ 
Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+ A  N   N++       + +  F+Q +         KD   HS+    F  + +DP
Sbjct: 346 MVQRATDNAKRNNL-------VQASFFSQDL--------TKDFSHHSWANQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           PR+G  +    ++Q  P+     I+Y+SCNP +L RD  +L    + +++ A+ D F +T
Sbjct: 391 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 446

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 447 EHVESIALFEK 457


>gi|258405875|ref|YP_003198617.1| (Uracil-5)-methyltransferase [Desulfohalobium retbaense DSM 5692]
 gi|257798102|gb|ACV69039.1| (Uracil-5)-methyltransferase [Desulfohalobium retbaense DSM 5692]
          Length = 391

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 119/283 (42%), Gaps = 65/283 (22%)

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKI----CL-------------DRDYVDERLT 172
            WR    R R  LH  + Q  L+G+ +  K+    CL              RD  D R T
Sbjct: 127 GWR---YRWRGQLHVHQGQPHLLGQGSHAKVPIERCLLFARPLAEALPRLARDLPDGRHT 183

Query: 173 VAGRT---------------------LIYRQIENSFTQPNAGINVHMLE----WVLAATK 207
           VA                        L    +  +F Q N  +N  ++E    W  A ++
Sbjct: 184 VAASPVDHAVASALETHRLSLPLPGGLAVDVLPQTFFQANQSLNPTLVEHIRSWCPAGSR 243

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                + +LY G GNF L LA+  + V AVE   P+++AAR   A + +++ +  +    
Sbjct: 244 -----VADLYAGAGNFGLPLAQAGNPVFAVEGDGPALQAARTTAARSGLDHWQGRQAD-- 296

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNP 325
                +R ER +       I  ++   +  DPPRSG       +  + +   I++ISC+ 
Sbjct: 297 -----LRHERAWK-----PILEFQPDVVVADPPRSGSGPVCRHLLHIPSLERIIWISCDL 346

Query: 326 DSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +  RD+ S L+    +  LALFD FP T HME   +L R+ S
Sbjct: 347 TNSARDVRSFLTQGWQLTSLALFDMFPQTWHMEGVFILDRRGS 389


>gi|170289500|ref|YP_001739738.1| RNA methyltransferase [Thermotoga sp. RQ2]
 gi|170177003|gb|ACB10055.1| RNA methyltransferase, TrmA family [Thermotoga sp. RQ2]
          Length = 439

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 21/185 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            +F Q N  I   +++ V      +QG+  +L+LY G G FS+  +    RV++VE ++ 
Sbjct: 268 TAFFQSNYSITSKLIDHVYREL-ALQGNEVVLDLYAGIGTFSVRTSFSAARVISVESSRV 326

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V+A + N   N   N++ V     +F            LK+   +S R   I +DPPRS
Sbjct: 327 AVKAGKANANINSRRNIEYVEQDVLDF------------LKN---YSGRADRIILDPPRS 371

Query: 303 GLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           G   +A   + +  P  I+Y+SC P +L RDL +L    ++I  +  FD FP T H+E  
Sbjct: 372 GAGPEAMKEIARLSPERIVYVSCEPSTLVRDLKVLVENGYSIVGVKPFDMFPQTYHVETA 431

Query: 360 VLLVR 364
           V LV+
Sbjct: 432 VTLVK 436


>gi|15601683|ref|NP_233314.1| 23S rRNA methyluridine methyltransferase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|153821031|ref|ZP_01973698.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae B33]
 gi|229510217|ref|ZP_04399697.1| RNA methyltransferase TrmA family [Vibrio cholerae B33]
 gi|229517653|ref|ZP_04407098.1| RNA methyltransferase TrmA family [Vibrio cholerae RC9]
 gi|229605461|ref|YP_002876165.1| 23S rRNA methyluridine methyltransferase [Vibrio cholerae MJ-1236]
 gi|254850093|ref|ZP_05239443.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio cholerae MO10]
 gi|20455420|sp|Q9KL20|RUMB_VIBCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|9658366|gb|AAF96826.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126521405|gb|EAZ78628.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae B33]
 gi|229345689|gb|EEO10662.1| RNA methyltransferase TrmA family [Vibrio cholerae RC9]
 gi|229352662|gb|EEO17602.1| RNA methyltransferase TrmA family [Vibrio cholerae B33]
 gi|229371947|gb|ACQ62369.1| RNA methyltransferase TrmA family [Vibrio cholerae MJ-1236]
 gi|254845798|gb|EET24212.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio cholerae MO10]
          Length = 375

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+
Sbjct: 237 MWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQS 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                E                + V+PPR GL       ++A    +ILY SCNP ++ +
Sbjct: 297 QMSAPEL---------------VLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D++ LS+   I R+  FD FP+T H E   LLVRK
Sbjct: 342 DIAELSSYQMI-RVQWFDMFPHTDHAEVLTLLVRK 375


>gi|332523646|ref|ZP_08399898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314910|gb|EGJ27895.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 453

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+   +V  VE+ + +V+ AR N   N ++N + V  S++   + 
Sbjct: 308 VIDAYSGIGTIGLSFAKKVKKVYGVEVIEAAVKDARKNAERNGIHNAEFVIGSAEATMEK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ +      A   I Y+SCNP ++ R
Sbjct: 368 WSKE------------GIKPSVILVDPPRKGLTESFIKASAAMAPKKITYVSCNPATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP+T H+EC VLL R
Sbjct: 416 DIKLYQELGYDLKKVQPVDLFPHTHHVECVVLLQR 450


>gi|302335620|ref|YP_003800827.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084]
 gi|301319460|gb|ADK67947.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084]
          Length = 446

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/177 (34%), Positives = 84/177 (47%), Gaps = 22/177 (12%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N      ++  VL   +  + D  ++LYCG G F+L LAR    V AVE   P+V
Sbjct: 279 SFFQVNTRGAERLVSLVLEGLRPTEDDGAMDLYCGAGTFTLPLARRCAWVSAVESYGPAV 338

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
              R+N+    ++NV           Q    +REF +  D D+       I VDPPR+GL
Sbjct: 339 RDLRHNLDVARLDNVD---------AQGGDADREFPQ-SDADV-------IVVDPPRAGL 381

Query: 305 DDATVGMVQAYP--HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
             A V  + A     I Y+SC+P +L RDL+         IE +   D FP T H+E
Sbjct: 382 GGAVVDKLSAQDARAIAYVSCDPATLARDLARFRERAAFAIESVVPVDLFPQTFHVE 438


>gi|167760785|ref|ZP_02432912.1| hypothetical protein CLOSCI_03170 [Clostridium scindens ATCC 35704]
 gi|167661672|gb|EDS05802.1| hypothetical protein CLOSCI_03170 [Clostridium scindens ATCC 35704]
          Length = 567

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 165/397 (41%), Gaps = 61/397 (15%)

Query: 9   QYEQQLAEKVDRLR-QMMLAFQVPNLQIFRS--------EPIHYRMRAEFHIWHDGDDLY 59
           +Y++QLA K D++R  +M   +VP   + ++         P HYR +A+F I  D +   
Sbjct: 89  EYDRQLAFKEDKIRGNLMRIGEVPAEVLDQALEPIVGMDNPFHYRNKAQFPIGTDNEG-- 146

Query: 60  HIMFDQQTKERMRIDYFMPG---SLLIN---ALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           HI           I  F  G   S++ N   AL +E+   I  + L   + ++I      
Sbjct: 147 HI-----------ITGFYAGRTHSIIPNTDCALGVEVNEVILKQILTFMEEYKISAYDET 195

Query: 114 SDQAIV--TLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGRANKTKICLDRDYVDER 170
             + +V   LI +  +      C +   + L H      +L      T I L  +     
Sbjct: 196 EHKGLVRHVLIRYGFVTKEIMVCLVINGNHLPHGEILAERLAKIEGMTSITLSINKEKTN 255

Query: 171 LTVA-------GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--L 213
           + +        G+T I   I N        SF Q N  +    L  +     G+ G   +
Sbjct: 256 VIMGSKIEPLWGKTYITDYIANVKYQISPLSFYQVNP-VQTEKLYGLALEYAGLTGKETV 314

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA- 272
            +LYCG G  SL LA+    V  VEI   ++E A  N   N + N +     ++E     
Sbjct: 315 WDLYCGIGTISLFLAQKAKEVYGVEIVPQAIEDASNNAKINGIENARFYVGKAEEVLPEY 374

Query: 273 -MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329
             + E+E  R    D+       I VDPPR G +++ +  MV   P  I+Y+SC+  +L 
Sbjct: 375 YAQYEKEHGRNAHADV-------IVVDPPRKGCEESLLQTMVDMEPERIVYVSCDSATLA 427

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD+  L    + + R    DQF +T H+E   LL+ K
Sbjct: 428 RDVKFLREKGYELVRGRGVDQFGHTVHVETVALLIPK 464


>gi|154496435|ref|ZP_02035131.1| hypothetical protein BACCAP_00727 [Bacteroides capillosus ATCC
           29799]
 gi|150274518|gb|EDN01595.1| hypothetical protein BACCAP_00727 [Bacteroides capillosus ATCC
           29799]
          Length = 454

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G  SLV+AR   +V   E+   +VE AR N   N VNN + +   + E  +A
Sbjct: 310 VLDLYCGIGTISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGDAGEAARA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCR 330
           +                 +   + VDPPR GL +D    +V   P  ++Y+SC+P +L R
Sbjct: 370 LA------------ARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLAR 417

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+   +S  + + +    D FP T H+E  VLL R
Sbjct: 418 DVKRFVSLGYVLRKAEAVDMFPRTAHVESVVLLTR 452


>gi|239905414|ref|YP_002952153.1| 23S rRNA (uracil-5-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239795278|dbj|BAH74267.1| 23S rRNA (uracil-5-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 450

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 21/219 (9%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           +H+ +     +    +  I L R ++ E++  A      R + ++F Q N G    + E 
Sbjct: 241 VHSVRRAPTPVAHGERQSIVLGRGHLTEKMGQA----TLRVLPDAFAQTNTGAAQSLYEI 296

Query: 202 VL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V   A+    G  L+LYCG+G  +L LA  F  V  ++I   S+E+A+ +   +  +N  
Sbjct: 297 VTREASSDPAGTALDLYCGSGGLALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCV 356

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318
                   F  A   +   +   D          + +DPPR+G     +  +   A   +
Sbjct: 357 --------FEAADAADALDDLAGDPPT------VVVLDPPRAGAAPEVIAAILRTAPGRV 402

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           +Y+SCNP +L RDL  L+  + +  +   D FP+T H+E
Sbjct: 403 VYVSCNPATLARDLKRLAEAYDVTSVTPVDLFPHTAHIE 441


>gi|16800882|ref|NP_471150.1| hypothetical protein lin1815 [Listeria innocua Clip11262]
 gi|50401775|sp|Q92AV4|Y1815_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1815
 gi|16414317|emb|CAC97046.1| lin1815 [Listeria innocua Clip11262]
          Length = 457

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N ++NV      +++    
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIDNVYYEVGKAEDVLPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG---MVQAYPHILYISCNPDSLC 329
             +E             +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLQVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL++L+  + I  +   D FP T H+E   LL R+
Sbjct: 422 RDLALLAKKYQIRYMQPVDMFPQTAHVETVTLLQRR 457


>gi|296329282|ref|ZP_06871783.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153638|gb|EFG94455.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 543

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271
           +++ Y G G   +++A+   +V A+EI K + E        N + N++ +  +  KE  +
Sbjct: 308 IVDAYSGTGTIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAVEKELVK 367

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329
            +      N  K IDI       I  DPPR GL+ + +  V       ++YISCNP +  
Sbjct: 368 LI------NNNKKIDI-------IIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFA 414

Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           RD+ + S   + +++L   D FP T H+E   LL +
Sbjct: 415 RDIKLFSEKGYVLKKLQAVDMFPQTSHIETVALLSK 450


>gi|313904355|ref|ZP_07837733.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6]
 gi|313470905|gb|EFR66229.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6]
          Length = 490

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 15/159 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++LYCG G  SL LA    +V+ VEI   ++E A+ N A N + N +     ++E   A
Sbjct: 344 VMDLYCGIGTISLFLAAKAAKVIGVEIVPEAIEDAKKNAAMNGIENAEFYVGKAEEVVPA 403

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330
           +     + +    D+       + VDPPR G D   +  + Q  P  ++Y+SC+P +L R
Sbjct: 404 L-----YAKGAKADV-------VVVDPPRKGCDQKLLDTILQMDPGRLVYVSCDPATLAR 451

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           DL  L+   + ++ +  +DQF +T H+E   LL +   G
Sbjct: 452 DLKFLTANGYELKYVQPYDQFCHTVHVETCCLLEKTVVG 490


>gi|293401173|ref|ZP_06645317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305299|gb|EFE46544.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 438

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 15/182 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF Q N    + +   + +   G    ++E Y G G  SL L      ++ +E  K +V 
Sbjct: 268 SFFQLNTKQAIQLYRTIASMISGNHEFIVEAYSGIGAISLYLKDKAKEIIGIESIKDAVV 327

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   N   +V  V         A  +    ++ + ID+       + VDPPRSGLD
Sbjct: 328 NANRNAKKNGCAHVSFV------CDDAANKLVYLSKKRTIDV-------LVVDPPRSGLD 374

Query: 306 DATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DA +  +       I+Y+SCN  +L ++L++L + + +E++   D FP+T H+E   L+ 
Sbjct: 375 DAMLECILRSKIKEIVYVSCNAATLGKNLAVLQSCYHVEKVVPIDMFPHTPHVETVCLMS 434

Query: 364 RK 365
           RK
Sbjct: 435 RK 436


>gi|169797170|ref|YP_001714963.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           AYE]
 gi|215484633|ref|YP_002326868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii AB307-0294]
 gi|301345773|ref|ZP_07226514.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           AB056]
 gi|301511169|ref|ZP_07236406.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           AB058]
 gi|301594976|ref|ZP_07239984.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           AB059]
 gi|332856909|ref|ZP_08436318.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6013150]
 gi|226725372|sp|B7H018|RUMA_ACIB3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|226725376|sp|B0V5N2|RUMA_ACIBY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|169150097|emb|CAM87991.1| 23S rRNA (Uracil-5-)-methyltransferase(23S
           rRNA(M-5-U1939)-methyltransferase) [Acinetobacter
           baumannii AYE]
 gi|213985913|gb|ACJ56212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii AB307-0294]
 gi|332726963|gb|EGJ58468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6013150]
          Length = 463

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 32/191 (16%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242
           FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR      +V+ VE ++ 
Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+ A  N   N++       + +  F+Q +         KD   HS+    F  + +DP
Sbjct: 346 MVQRATDNAKRNNL-------VQASFFSQDL--------TKDFSHHSWANQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           PR+G  +    ++Q  P+     I+Y+SCNP +L RD  +L    + +++ A+ D F +T
Sbjct: 391 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 446

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 447 EHVESIALFEK 457


>gi|293188991|ref|ZP_06607724.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           odontolyticus F0309]
 gi|292822093|gb|EFF81019.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           odontolyticus F0309]
          Length = 387

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 95/204 (46%), Gaps = 25/204 (12%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEW--VLAATKGIQGDLLE----LYCGNGNFS 224
           L+V G  L  R    SF Q NA +   + E   V A+     G L E    LYCG G F+
Sbjct: 198 LSVEGLELGPR----SFAQTNAHVASTLYEQASVWASRPFTDGRLPESLWDLYCGVGGFA 253

Query: 225 LVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           L  AR  F RV  VE++  ++ +A    AA H    +       +   A  R +    + 
Sbjct: 254 LACARSGFPRVTGVEVSPGAISSAIS--AARHAGLSRGAATFIADDATAWARAQSPEDVP 311

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
           D+         I V+PPR G+       +   A P ++Y SCNP SL RDL ++ +   +
Sbjct: 312 DV---------IVVNPPRRGIGADLAAYLNGCAAPRVIYSSCNPASLARDLQLMPSLRPV 362

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E   +FD FP+T H+E  +LL R+
Sbjct: 363 EGR-IFDMFPHTTHVEVALLLERE 385


>gi|260590015|ref|ZP_05855928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
           20583]
 gi|260539527|gb|EEX20096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
           20583]
          Length = 462

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 31/232 (13%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + R+++T+I   +DY  E +      L ++    SF QPN+    +  E 
Sbjct: 254 LHIINNSLSDVVRSDETRILYGQDYFYEEIL----GLKFKITPFSFFQPNS----YGAEV 305

Query: 202 VLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +    +   GD     + +LY G G  S ++A     V+ VEI + +V+AA  N   N +
Sbjct: 306 LYKTAREYIGDTKEMTVFDLYSGTGTISQIMASVAKEVIGVEIVEEAVKAAGENAHLNGI 365

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            N + +     +    ++ + +F               I +DPPR G+    +  +  Y 
Sbjct: 366 ENCRFIAGDVLKVLDDIQEKPDF---------------IILDPPRDGIHPKALPKIIDYG 410

Query: 317 --HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              ++YISC P SL RDL + L   + +E++   DQF  T H+E   LL RK
Sbjct: 411 VDKLVYISCKPTSLARDLEMFLGRGYQVEKVCCVDQFCQTVHVETVCLLQRK 462


>gi|255320868|ref|ZP_05362042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           radioresistens SK82]
 gi|262380239|ref|ZP_06073394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           radioresistens SH164]
 gi|255302037|gb|EET81280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           radioresistens SK82]
 gi|262298433|gb|EEY86347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           radioresistens SH164]
          Length = 463

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 32/191 (16%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242
           FTQ N+ +N  M+           G+ +L+L+CG GNFSL LAR      +V+AVE ++ 
Sbjct: 286 FTQVNSTVNSQMVSLACNLLNLQPGERVLDLFCGLGNFSLPLARCVGETGQVIAVEGSED 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+    N  +N + N   VR  S++ T            KD   HS+    F  + +DP
Sbjct: 346 MVKRGTENARSNKLLN---VRFYSQDLT------------KDFSSHSWAKQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           PR+G ++    ++   P+     I+Y+SCNP +L RD  IL    + +++  + D F +T
Sbjct: 391 PRAGAEE----VMHYLPNFNAKRIVYVSCNPATLARDAGILVEHGYRLKKAGVMDMFTHT 446

Query: 354 RHMECGVLLVR 364
            H+E  VL  +
Sbjct: 447 GHVESIVLFEK 457


>gi|307249529|ref|ZP_07531516.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858384|gb|EFM90453.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 442

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q N  +N  M    LEW+ L+A    Q  +L+L+CG GNF+L +A+    V+ VE  +
Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P V  AR N   + + NV   + +  E               D    S  F  + +DP R
Sbjct: 330 PMVAQARQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G       +    P  I+Y+SCNP +L RD   ++   + +++ A+ D FP+T H+E  
Sbjct: 378 NGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437

Query: 360 VLLVR 364
            L  +
Sbjct: 438 SLFTK 442


>gi|225571369|ref|ZP_03780365.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM
           15053]
 gi|225159845|gb|EEG72464.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM
           15053]
          Length = 475

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 17/190 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N      + E  L    G+ GD  + +LYCG G  SL LA+    V  VEI   +
Sbjct: 287 SFYQVNPVQTERLYETALEYA-GLHGDETVWDLYCGIGTISLFLAQKAKHVYGVEIVPQA 345

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N + N +     +++            + ++  IH+     I VDPPR G
Sbjct: 346 IEDAKKNAQINGIENARFYVGKAEDVLP--------EKYENDGIHA---DIIVVDPPRKG 394

Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
            +++ +  MV+  P  I+Y+SC+  +L RD+  L  + + ++R+   D FP+T H E   
Sbjct: 395 CEESVLHTMVKMQPERIVYVSCDSATLARDVKYLRGSGYEVKRVKGVDMFPHTGHTEVVC 454

Query: 361 LLVRKPSGWH 370
           LL +  S  H
Sbjct: 455 LLSKLKSSKH 464


>gi|154483239|ref|ZP_02025687.1| hypothetical protein EUBVEN_00940 [Eubacterium ventriosum ATCC
           27560]
 gi|149736047|gb|EDM51933.1| hypothetical protein EUBVEN_00940 [Eubacterium ventriosum ATCC
           27560]
          Length = 317

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 19/158 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + +LA    +V+ VEI + +VEAA+ N + N++ N         EF   
Sbjct: 95  IFDLYSGTGTIAQILAPVAKKVVGVEIIEEAVEAAKVNASLNNLENC--------EFIAG 146

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                  + LK ID    +   I +DPPR G++   +  +  +    ++YISC P SL R
Sbjct: 147 -------DVLKVIDDLQDKPDLIVLDPPRDGINPKALQKIIDFGVDRMVYISCKPTSLAR 199

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366
           DL +L    + + + A  DQFP T H+E  VLL  +KP
Sbjct: 200 DLEMLQEQGYKVVKAAAIDQFPNTNHVETVVLLSQQKP 237


>gi|325920673|ref|ZP_08182583.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325548863|gb|EGD19807.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 444

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHALALLDARPEDRVLDLFCGLGNFTLPLARGVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  AR N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 325 VEGDAGLVARARENAQRNGLDNAQ---FHAADLTQDQRHTAWMRQ---------GFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T++     D FP+T
Sbjct: 373 LDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTLKAAGAMDMFPHT 432

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 433 AHVESIAVFERR 444


>gi|268319959|ref|YP_003293615.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus
           johnsonii FI9785]
 gi|262398334|emb|CAX67348.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus
           johnsonii FI9785]
          Length = 449

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ KP+VE A  N   N + N + V   ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E              +   IFVDPPR GL    +   V+  P  I+YISCNP ++ R
Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVR 412

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +     +  + +   D FP T H+E   +L R+
Sbjct: 413 DLQLFKEQGYDFDEIDPVDMFPQTPHVESVTVLERQ 448


>gi|315608157|ref|ZP_07883149.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC
           33574]
 gi|315250126|gb|EFU30123.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC
           33574]
          Length = 490

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N     H+   V      + GD L  +LY G G  +  +AR   +V+ +E    +
Sbjct: 319 SFYQTNTEQAYHLYS-VAREFSQLTGDELVYDLYTGTGTIANFVAREAKQVIGIEYVPEA 377

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N ++N        K+         EF R         R   I  DPPR+G
Sbjct: 378 IEDAKVNSEINGIDNTLFYAGDMKDILN-----DEFIR------QHGRPDVIITDPPRAG 426

Query: 304 LD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +  D    ++ A P  I+Y+SCNP +  RDL++L   + +E +   D FP+T H+E  VL
Sbjct: 427 MHADVVNTILHAAPRRIVYVSCNPATQARDLNLLDVDYRVEEVQPVDMFPHTPHVENVVL 486

Query: 362 LVRK 365
           LVR+
Sbjct: 487 LVRR 490


>gi|300853527|ref|YP_003778511.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM
           13528]
 gi|300433642|gb|ADK13409.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM
           13528]
          Length = 476

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 36/226 (15%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK 207
           NKT + L +  V+    + G+  I   I N        SF Q N  I   +L        
Sbjct: 269 NKTNVILGKKCVN----LWGQDTIRDAIGNFKFNISPLSFFQVNP-IQTEVLYSKALEYA 323

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + + YCG G  SL L++   +V  VEI   +++ AR N   N VNNV+ +   
Sbjct: 324 GLSGNEVVFDAYCGTGTISLFLSQKSKKVYGVEIIDEAIKNARINAEQNGVNNVEFITGK 383

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-----ILY 320
           S+              + ++     +   + VDPPR G D   +G+++A        ++Y
Sbjct: 384 SEVV------------IPELISKGIKADVVVVDPPRKGCD---MGLLKAIADMEPRTVVY 428

Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +SC+P +L RDL++L    +  + +   D F  T H+E  VL+ RK
Sbjct: 429 VSCDPATLARDLAVLRELGYMTKEVQPVDMFAQTAHVETVVLMSRK 474


>gi|269794934|ref|YP_003314389.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Sanguibacter keddieii DSM 10542]
 gi|269097119|gb|ACZ21555.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Sanguibacter keddieii DSM 10542]
          Length = 442

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 25/213 (11%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDL-----LELY 217
           R  V E +TV G  + YR   + F Q +      + + VL AA  G  GDL     ++LY
Sbjct: 243 RRSVSETVTVDGEEISYRVAADGFWQVHREAPSLLAQVVLDAARGGADGDLTDATVVDLY 302

Query: 218 CGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
            G G F++ LA+      RV+A+E  + +V+ AR N      +  + V +   +  Q +R
Sbjct: 303 SGAGLFTVPLAKAVGQVGRVVAIEGDERAVKDARRN-----AHAFEQVELHVGQVDQVLR 357

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
                  +   D+       + +DPPR+G    T+  + A     I+Y++C+P +L RD+
Sbjct: 358 TA-GHGAIAGADV-------VVLDPPRTGAGAKTIAQIVALSPSRIVYVACDPAALARDI 409

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           + L+   + +E +  FD FP T H+EC  +L R
Sbjct: 410 AYLAKDGYELESVRAFDLFPMTHHVECVAVLTR 442


>gi|167855793|ref|ZP_02478546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus parasuis
           29755]
 gi|167853072|gb|EDS24333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus parasuis
           29755]
          Length = 446

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271
           +L+L+CG GNF+L +A   + V+ +E  +P V  A+ N   N +NN K  +    K F  
Sbjct: 297 VLDLFCGMGNFTLPIAPFVEEVVGIEGVEPMVAQAKQNAQTNQINNAKFYQTDLDKPFVD 356

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCR 330
               +  FN+               +DP R+G   A   + +  P  I+Y+SCNP +L R
Sbjct: 357 QPWAKAYFNK-------------ALLDPARNGAYFALDHLCELQPERIVYVSCNPATLVR 403

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   +++  + + + A+ D FP+T H+E   L  R+
Sbjct: 404 DAEKLIAKGYRLSQSAMIDMFPHTAHLESISLFERR 439


>gi|90408288|ref|ZP_01216453.1| 23S rRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3]
 gi|90310589|gb|EAS38709.1| 23S rRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3]
          Length = 445

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 14/181 (7%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q NA +N  M++  +      + D +L+L+CG GNF+L +AR   +V+ VE  +  VE
Sbjct: 275 FLQVNAQVNQKMVKQAIQWLALDENDTVLDLFCGLGNFTLPIARQVKKVVGVEGVQQMVE 334

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A +N   N+VNN         EF QA   +   N +        +F  + +DP R+G  
Sbjct: 335 RASHNAQLNNVNN--------SEFYQA---DLSSNDIYKQQWAQQKFTKVLLDPARAGAF 383

Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +    +      HI+YI+C+  +L RD   +L   + +++L L D FP T+HME   L +
Sbjct: 384 NCMEFIASLEVSHIVYIACDAVTLARDSYLLLEKGYKLDKLGLLDMFPQTKHMESMALFL 443

Query: 364 R 364
           R
Sbjct: 444 R 444


>gi|257066182|ref|YP_003152438.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM
           20548]
 gi|256798062|gb|ACV28717.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM
           20548]
          Length = 415

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 19/156 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+L+CG+G  S+ L  + D ++ +EI K +++ A+ N   N++ + K +  ++    Q 
Sbjct: 275 LLDLFCGSGISSIAL--NDDNIVGIEINKSAIKDAKENAKINNLTDYKFIDKNANYIDQK 332

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                         I   + +T+ VDPPR+GLD   +  +      +I+YISCNP +L R
Sbjct: 333 F-------------IEKEKIQTVTVDPPRAGLDKEIIKTLAKTKIKNIIYISCNPQTLAR 379

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+   +   + ++ +   D FP T H+E  + L++K
Sbjct: 380 DIKRFMDRGYELKEIKAVDMFPQTMHVE-AIALIQK 414


>gi|120603103|ref|YP_967503.1| RNA methyltransferase [Desulfovibrio vulgaris DP4]
 gi|120563332|gb|ABM29076.1| 23S rRNA m(5)U-1939 methyltransferase [Desulfovibrio vulgaris DP4]
          Length = 468

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 11/153 (7%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G+ +L LA H   +  +E    SVEAA+ N  A    +   V    +   ++  
Sbjct: 315 DLYCGVGSITLWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRALLRSRS 374

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDL 332
           + +    + D+         +  DPPR+G+  D    ++Q  P  I+Y+SC+P ++ RD+
Sbjct: 375 KGKAQEPIPDV---------VVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDV 425

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +L   +T+      D FP+T H+E  VLL  K
Sbjct: 426 GLLMQRYTLHEARPVDLFPHTPHVETVVLLSNK 458


>gi|50421187|ref|XP_459139.1| DEHA2D15114p [Debaryomyces hansenii CBS767]
 gi|49654806|emb|CAG87310.1| DEHA2D15114p [Debaryomyces hansenii]
          Length = 566

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 21/161 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  ++   RV+ VE++  SV+ A  N   NH+ N   +          
Sbjct: 418 LVDAYCGSGLFSITCSQGVSRVIGVEVSADSVKFAELNAKNNHIENATFI---------V 468

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
            + E+ F    +ID  + R   + +DPPR G DD  +  +  Y    I+YISCN  S  R
Sbjct: 469 GKAEKIFG---NIDTPADR-TAVILDPPRKGCDDVFLNQLSEYHPARIVYISCNVHSQAR 524

Query: 331 DLS--ILSTTHT----IERLALFDQFPYTRHMECGVLLVRK 365
           D+   I  T H     +E +  FD FP T H+E   +L  K
Sbjct: 525 DVDWFINKTKHGQDYFVESIKGFDFFPQTHHVESIAVLALK 565


>gi|253700779|ref|YP_003021968.1| RNA methyltransferase, TrmA family [Geobacter sp. M21]
 gi|251775629|gb|ACT18210.1| RNA methyltransferase, TrmA family [Geobacter sp. M21]
          Length = 438

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 20/196 (10%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGN 222
           V   L    R +  R     F+Q N   N+ ++    EW  A  +G++  +L+LYCGNGN
Sbjct: 250 VPAGLFPGSREVRLRFSRGGFSQVNYRQNLELIKTVGEWG-APREGVR--VLDLYCGNGN 306

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            S+ LA     V+ VE   PS+  A  N  AN V N      +S +   A    R   + 
Sbjct: 307 ISVPLAPLVGEVVGVEGYAPSIVDAAANAEANGVAN------ASYQVGDAALSVRRLAKR 360

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTI 341
           K+      +F  + +DPPR+G + A    + A   ILY+SC+P +L RDL+ +    + +
Sbjct: 361 KE------KFDMVVLDPPRAGAEAAGELALLAPERILYVSCDPATLARDLAQLCGAGYRV 414

Query: 342 ERLALFDQFPYTRHME 357
            R    D FP T H+E
Sbjct: 415 ARSKPVDMFPQTYHLE 430


>gi|197302873|ref|ZP_03167925.1| hypothetical protein RUMLAC_01602 [Ruminococcus lactaris ATCC
           29176]
 gi|197298110|gb|EDY32658.1| hypothetical protein RUMLAC_01602 [Ruminococcus lactaris ATCC
           29176]
          Length = 555

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E A+ N   N +NN       ++E      
Sbjct: 314 DLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKNNAKINEINNAAFYVGKAEEVLPDYY 373

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
            E      K       R   I VDPPR G D+  +  +V+  P  ++Y+SC+  +L RDL
Sbjct: 374 EE----YAKTHGGEKARADVIVVDPPRKGCDETLLETIVKMEPEKVVYVSCDSATLARDL 429

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366
             L    + I ++   DQFP T H+E  VLL  +KP
Sbjct: 430 KYLCENGYEIRKVRGVDQFPETVHVETVVLLSQQKP 465


>gi|161508136|ref|YP_001578104.1| methyltransferase [Lactobacillus helveticus DPC 4571]
 gi|160349125|gb|ABX27799.1| Methyltransferase [Lactobacillus helveticus DPC 4571]
          Length = 448

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 20/203 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           Y+D+++      L +     SF Q N+    H+ +  +      + DL+ + Y G G   
Sbjct: 258 YIDDKIG----DLTFEISPQSFFQINSLQTPHLYKLAINQAGLTKDDLIVDAYSGIGTIG 313

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E        
Sbjct: 314 LSAAKYVKEVRGVEVIKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE-------- 365

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341
                 +   IFVDPPR GL    +   V+  P  ++YISCNP +L RD+ +L    +T 
Sbjct: 366 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYTT 421

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + ++  D FP T H+E   +L R
Sbjct: 422 DLVSPVDMFPQTPHVESVTVLER 444


>gi|46579337|ref|YP_010145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|51316680|sp|Q72DK5|Y924_DESVH RecName: Full=Uncharacterized RNA methyltransferase DVU_0924
 gi|46448751|gb|AAS95404.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311233164|gb|ADP86018.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris RCH1]
          Length = 468

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 11/153 (7%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G+ +L LA H   +  +E    SVEAA+ N  A    +   V    +   ++  
Sbjct: 315 DLYCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRALLRSRS 374

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDL 332
           + +    + D+         +  DPPR+G+  D    ++Q  P  I+Y+SC+P ++ RD+
Sbjct: 375 KGKAQEPIPDV---------VVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDV 425

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +L   +T+      D FP+T H+E  VLL  K
Sbjct: 426 GLLMQRYTLHEARPVDLFPHTPHVETVVLLSNK 458


>gi|227496372|ref|ZP_03926662.1| 23S rRNA methyluridine methyltransferase [Actinomyces urogenitalis
           DSM 15434]
 gi|226834099|gb|EEH66482.1| 23S rRNA methyluridine methyltransferase [Actinomyces urogenitalis
           DSM 15434]
          Length = 410

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 16/155 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG G F+L LA    +VL VE++ P+++ AR           +  R+   +  QA R
Sbjct: 269 DLFCGVGGFALALAGPGRQVLGVEVSAPAIDGAR-----------QAARLMGLD-AQAAR 316

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
            E    R+ D    +     + ++PPR G+       +++     +LY SCNP SL RDL
Sbjct: 317 FEAGDARVLDPGAGAVP-DLLVLNPPRRGIGQDLAARIESAGVERVLYSSCNPASLARDL 375

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             +S ++T  R  LFD FP+T H E  + L R PS
Sbjct: 376 EAMS-SYTAVRAQLFDMFPHTDHAEVLIELRRSPS 409


>gi|295104063|emb|CBL01607.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii SL3/3]
          Length = 476

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 93/198 (46%), Gaps = 20/198 (10%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
           T+ G+T  Y     SF Q N      +    + A K + G   +L+ YCG G   L  A 
Sbjct: 200 TLCGKT--YAISPRSFYQVNPAQTAVLYGLAVEAAK-LTGKEVVLDAYCGIGTIGLTAAD 256

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           H  +V+ VE+ + +V+ A  N  A H N VK  R  + + T+ +R         D+    
Sbjct: 257 HAKQVVGVELNRDAVQDAIGN--ARH-NGVKNARFFAADATRWIREAAAAGEKADV---- 309

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLAL 346
                IF+DPPR G     +  V   A   ++Y+SCNP +L RDL+ L+   +  E    
Sbjct: 310 -----IFMDPPREGSTPEFLASVARMAPKRVVYVSCNPVTLARDLATLTKLGYKAEGFTP 364

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E  VLL +
Sbjct: 365 VDMFPHTEHVETVVLLSK 382


>gi|29840640|ref|NP_829746.1| RNA methyltransferase [Chlamydophila caviae GPIC]
 gi|50401542|sp|Q821Q5|Y883_CHLCV RecName: Full=Uncharacterized RNA methyltransferase CCA_00883
 gi|29834990|gb|AAP05624.1| RNA methyltransferase, TrmA family, putative [Chlamydophila caviae
           GPIC]
          Length = 401

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 111/213 (52%), Gaps = 28/213 (13%)

Query: 166 YVDERLTVA--GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221
           ++ + LT+   G + ++     SF QP +     ++E +       QG   LL+LYCG G
Sbjct: 205 FIKQTLTLPKDGNSGVFHVRPRSFFQPQSLQGAKIIE-IAKEFMNPQGSETLLDLYCGAG 263

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFN 280
              ++L+ +  +V+ VEI   ++++A+ NI  N   N +++    +K F    RR ++  
Sbjct: 264 TIGIMLSAYVKKVIGVEIVPDAIDSAKENILINKKENLIEVYLEDAKTFC---RRHQD-- 318

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNP----DSLCRDLSI 334
                D+       + +DPPR G+ +  +  +++ +P  I+YISCNP    +  C   S+
Sbjct: 319 -CPPPDV-------VVIDPPRCGIQNKVLKYLLRIFPKKIIYISCNPKIQFEECC---SL 367

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +S  + I+++   DQFP++ H+E  +LL R+ S
Sbjct: 368 ISAGYHIKKVQPLDQFPHSPHLENIILLEREDS 400


>gi|253316906|ref|ZP_04840119.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 453

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   S+E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKSDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|237725460|ref|ZP_04555941.1| RNA methyltransferase [Bacteroides sp. D4]
 gi|229436147|gb|EEO46224.1| RNA methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 473

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 14/183 (7%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N+G   ++ +      +    +L+ +LY G G  +  ++R   +V+ +E    ++
Sbjct: 301 SFYQTNSGQAYNLYKVARNFARLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAI 360

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E A+ N A N ++N        K+        +EF     I  H  R   I  DPPR+G+
Sbjct: 361 EDAKVNSAINGIDNTLFYAGDMKDILT-----QEF-----ISQHG-RPDVIITDPPRAGM 409

Query: 305 -DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            DD    ++ A P  I+Y+SCNP +  RDLS+L   + +  +   D FP+T H+E  VLL
Sbjct: 410 HDDVINTILFAEPQRIVYVSCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLL 469

Query: 363 VRK 365
            ++
Sbjct: 470 EKR 472


>gi|328464298|gb|EGF35727.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus MTCC
           5462]
          Length = 131

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 16/128 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G  SL +ARH  +V  VE+ + +V  A+ N A NH+ NV           + 
Sbjct: 8   VIDAYSGIGTISLTMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTF---------EV 58

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLC 329
            + E    + KD D+       + VDPPR GLD      VG ++  P ++YISCNP +L 
Sbjct: 59  GKAEDVMQKWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKP-PKMVYISCNPATLA 114

Query: 330 RDLSILST 337
           RDL +L+ 
Sbjct: 115 RDLQLLAA 122


>gi|259047667|ref|ZP_05738068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella
           adiacens ATCC 49175]
 gi|259035858|gb|EEW37113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella
           adiacens ATCC 49175]
          Length = 467

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 160/387 (41%), Gaps = 54/387 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QLA K  +++ +M    ++P L++ R+      + YR +A+  +      L    F 
Sbjct: 103 YESQLAFKQQQVKNVMTKIAKMPELEVRRALGMESALGYRNKAQIPVRTVDGLLTTGFFK 162

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSDQA 117
           + + + + ++ F      I+ L++ +   +R  P++          L  I        + 
Sbjct: 163 KNSHDLIPMENFHIQDPEIDRLIVAVRDILRKYPVVAYDEANHTGDLKHIIVRRGLRTKQ 222

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----------LIGRANKTKICLDRDYV 167
           ++ +   R       E  +R   A H     I           ++GR  +TK+    D  
Sbjct: 223 VMIIFVTRTKGLPQAEAIVRDITAAHPEVVSIVQNIQPKPTNVIMGR--ETKVLFGEDVY 280

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           +E+L        ++    SF Q N      + +  + A     G+ +++ YCG G  SL 
Sbjct: 281 EEKLF----EFTFKISARSFFQVNTVQTEVLYQQAIDAADLKGGETVVDAYCGIGTMSLA 336

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
            AR   +V A+EI   ++  A+ N   N V NV     ++++    M R +E     D+ 
Sbjct: 337 FARDAKKVYAMEIVDDAIVMAKENAKLNGVTNVHFETGAAEKI---MPRWKEEGIQPDV- 392

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER- 343
                   I VDPPR GLD A +    A     I+Y+SCNP +L RDL      H  ER 
Sbjct: 393 --------IVVDPPRKGLDLAFIEAACATRPERIVYVSCNPATLARDL-----VHFKERG 439

Query: 344 -----LALFDQFPYTRHMECGVLLVRK 365
                +   D FP T H+E   LL RK
Sbjct: 440 YEAQYVQPVDMFPMTAHIEVVGLLERK 466


>gi|325849101|ref|ZP_08170593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480346|gb|EGC83409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 508

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 166/379 (43%), Gaps = 55/379 (14%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
            G  ++D  Y+ Q+  K + ++  +L     Q+ ++++ +S+  +YR +    I  DG  
Sbjct: 75  GGCSIMDINYKSQIKLKENLIKNALLKSAKIQLEDIEVLQSKEFYYRNKIRLQITKDGKL 134

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
            Y+  +     E       +   LL N L+ E +   ++E +  +K    +Y  S  +  
Sbjct: 135 AYNKKYSNDLIE-------IKDCLLANDLIRENLG--KIENI--SKEISKNYPNSLEEIT 183

Query: 118 IVTLIYHRLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           I       LL+   ++  I   ++       + I LI +              E+L ++G
Sbjct: 184 IRANDEEILLNIKIKDEKIIPYIKKQYKNSSFNINLINKK-------------EKLNISG 230

Query: 176 RT-LIYRQIENSFT---QPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLA 228
           +  LIY  ++  F         +N +M E +    K   G+   +L+L+CG+   S+ + 
Sbjct: 231 KDYLIYNLLDKKFKISMNDFYQVNDYMTEKLYKTAKNFLGEDQKVLDLFCGSATSSIAI- 289

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
            + D V+ +EI K +++ A+ N   N + + K +  +      A   + +F + + ID  
Sbjct: 290 -NDDHVVGIEINKNAIKDAKENAKINGLKDYKFIAKN------ANYIDHKFIKKEKID-- 340

Query: 289 SYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLA 345
                 I VDPPR+GLD              I+YISCNP +L RD++   +  + +E++ 
Sbjct: 341 -----AIVVDPPRAGLDKEIIKTIAKTKIKKIVYISCNPQTLARDINRFQNKGYKLEKIK 395

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D F  T H+E   LL +
Sbjct: 396 GCDMFSQTMHVETVALLSK 414


>gi|308189665|ref|YP_003922596.1| RNA methyltransferase protein [Mycoplasma fermentans JER]
 gi|307624407|gb|ADN68712.1| RNA methyltransferase protein [Mycoplasma fermentans JER]
          Length = 438

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 19/155 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++ Y G G  SL +A    +V  +EI K +V  A+ N   N++NNV        EF +
Sbjct: 296 NVVDAYSGIGTISLKIAEKVKKVYGLEIVKEAVINAKQNAKLNNINNV--------EFYE 347

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329
                   + LK ID    +  TI +DPPR+G+    +  +++  P  I YISCNP +LC
Sbjct: 348 G-------DVLKTIDNIKEKIDTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLC 400

Query: 330 RDLSI--LSTTHTIERLALFDQFPYTRHMECGVLL 362
           RD+ +  LS  + +E L   D F  T H+E   +L
Sbjct: 401 RDIDLLTLSKKYKLEFLKPCDMFCQTHHVEIVAIL 435


>gi|304436318|ref|ZP_07396296.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370723|gb|EFM24370.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 469

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 21/158 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  +L LA+   +V  +EI +P++  AR N   NHV N + +   + +   A
Sbjct: 321 VIDAYCGTGTITLFLAQRARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATKVMPA 380

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDS 327
           + ++              R   + VDPPR+G    T  ++Q +       I+Y+SCNP +
Sbjct: 381 LYKQ------------GIRPDVVVVDPPRAG---CTPTVLQTFADMKPQRIVYVSCNPAT 425

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L RDL+IL    +  + +   D FP T H+E    L R
Sbjct: 426 LARDLAILKEFGYHAQEVQPVDLFPQTSHVETITKLSR 463


>gi|237709870|ref|ZP_04540351.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|229455963|gb|EEO61684.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA]
          Length = 473

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 14/183 (7%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N+G   ++ +      +    +L+ +LY G G  +  ++R   +V+ +E    ++
Sbjct: 301 SFYQTNSGQAYNLYKVARNFARLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAI 360

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E A+ N A N ++N        K+        +EF     I  H  R   I  DPPR+G+
Sbjct: 361 EDAKVNSAINGIDNTLFYAGDMKDILT-----QEF-----ISQHG-RPDVIITDPPRAGM 409

Query: 305 -DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            DD    ++ A P  I+Y+SCNP +  RDLS+L   + +  +   D FP+T H+E  VLL
Sbjct: 410 HDDVINTILFAEPQRIVYVSCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLL 469

Query: 363 VRK 365
            ++
Sbjct: 470 EKR 472


>gi|227874094|ref|ZP_03992301.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268]
 gi|227840071|gb|EEJ50494.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268]
          Length = 400

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 7/159 (4%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G  SL LA+   +V  +EI   ++E A+ N   N + N +    +++E      
Sbjct: 243 DCYCGIGTISLFLAQKAKQVYGLEIVPEAIENAKKNAEKNGLQNAEFFVGAAEEVLPKWV 302

Query: 275 RE--REFN-RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329
            E  RE + +  D  I       + +DPPR G D+A +  V +  P  I+Y+SC+P SL 
Sbjct: 303 EEQKRELSAKGADCGIGDM-VDVVSLDPPRKGCDEACLSAVLELSPKRIVYVSCDPGSLA 361

Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           RD+  L    + +E+    D FP T H+E   LL ++ S
Sbjct: 362 RDIKYLGEGGYVLEKWVGIDNFPRTGHVETIALLQKEES 400


>gi|152974246|ref|YP_001373763.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022998|gb|ABS20768.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH
           391-98]
          Length = 458

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 163/385 (42%), Gaps = 50/385 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           YE+QL +K D + Q    +   +L+      +   +P HYR +++  +    + +   ++
Sbjct: 95  YEEQLNQKRDIVVQAFQKYMKNSLEEKIRPTLGMKDPWHYRNKSQLQVGRKDEKVITGLY 154

Query: 64  DQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKLFQIDYLTS 112
           +Q +   + I + M      N            L I +    + + L+R  + ++     
Sbjct: 155 EQNSHRLIDIAHCMIQHKATNEATKVVRRILEKLNISIYNERKGKGLIRTIVTRV---AV 211

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
           Q+ +  +TLI  +       +    ++  + A K  +Q +    KT +     + D+   
Sbjct: 212 QTGEVQITLITAKDEFPNKEQFIAEVQKQMPAVKSIMQNV-NGRKTSVI----FGDKTFH 266

Query: 173 VAGRTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
           +AG+ +I   + +        +F Q N    V +  E   AA    +  +++ YCG G  
Sbjct: 267 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGKEKIVDAYCGVGTI 326

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 327 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 379

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340
                 +    I VDPPR+G DD    T+  VQ    ++Y+SCNP SL RD+  L  ++ 
Sbjct: 380 -----GWHPDVIVVDPPRTGCDDKLLETILKVQPKT-VVYVSCNPSSLARDVKTLMKSYE 433

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +E +   D FP+T H+E  VLL R+
Sbjct: 434 VEYVQPVDMFPHTAHVETIVLLQRR 458


>gi|77413725|ref|ZP_00789907.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
 gi|77160216|gb|EAO71345.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
          Length = 451

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 162/386 (41%), Gaps = 52/386 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHI 61
           QY++QL  K D +RQ ++ F+     N +I ++    EP HYR + +F +   G ++   
Sbjct: 88  QYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMPEPEHYRAKLQFQVRSFGGNVRAG 147

Query: 62  MFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYLTSQSDQA- 117
           ++ Q T   + I   +    L   ++    E++   +L      K+  +  +  +  QA 
Sbjct: 148 LYAQGTHRLIDIKDCLVQDRLTQEMINRVAELLGKYKLPIYNERKIAGVRTVMIRRAQAS 207

Query: 118 ----IVTLIYHRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDY 166
               ++ +   RL  DD   E    +R+    +   + +            T++   ++ 
Sbjct: 208 GEIQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQES 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           ++E +   G +L  R    +F Q N     +   E V A       DL++ YCG G   L
Sbjct: 265 INEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVNALDVKEDDDLIDAYCGVGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   +++ A+ N  A H+            FT       E  + +DI
Sbjct: 321 AFAGKVKSVRGMDIIPEAIQDAKEN--ALHMG-----------FTNT---HYEAGKAEDI 364

Query: 286 D----IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+  +
Sbjct: 365 IPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L RK
Sbjct: 425 HVHYIQSVDMFPHTARTEAVVKLQRK 450


>gi|301052142|ref|YP_003790353.1| TrmA family RNA methyltransferase [Bacillus anthracis CI]
 gi|300374311|gb|ADK03215.1| RNA methyltransferase, TrmA family [Bacillus cereus biovar
           anthracis str. CI]
          Length = 459

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++  AR N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E             +R   I VDPPR G DD  +  +++  P  ++Y+SCNP SL R
Sbjct: 377 WVKE------------GWRPDVIVVDPPRIGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L  ++ +E +   D FP+T H+E  V LVRK
Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459


>gi|187735352|ref|YP_001877464.1| RNA methyltransferase, TrmA family [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425404|gb|ACD04683.1| RNA methyltransferase, TrmA family [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 407

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 16/155 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G F+L LA+ F +VL VE+++ S + AR N  +N + + + +   +      
Sbjct: 264 LVDAYCGSGLFALSLAKKFKKVLGVEVSETSADWARSNARSNGIEHAEFLAADAGAI--- 320

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                 F R   +D  + +   + +DPPR G     +  + A+    ++Y+SCNP +  R
Sbjct: 321 ------FAR---VDFPAEK-TAVVIDPPRKGCSAEFLAQLFAFGPGKVVYVSCNPATQIR 370

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL+      + +  +  FD FP T+H+EC V L +
Sbjct: 371 DLAEFDKAGYFVTAVQPFDLFPQTKHLECVVTLKK 405


>gi|300813136|ref|ZP_07093513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300495890|gb|EFK31035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 448

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 20/203 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           Y+D+++      L +     SF Q N+     + +  +      + DL+ + Y G G   
Sbjct: 261 YIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTIG 316

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E        
Sbjct: 317 LSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE-------- 368

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341
                 +   IFVDPPR GL    +   V+  P  ++YISCNP +L RD+ +L    +T 
Sbjct: 369 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYTT 424

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + ++  D FP T H+E  VL+ R
Sbjct: 425 DLVSPVDMFPQTPHVETVVLMSR 447


>gi|169825840|ref|YP_001695998.1| putative RNA methyltransferase [Lysinibacillus sphaericus C3-41]
 gi|168990328|gb|ACA37868.1| Hypothetical RNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
          Length = 459

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 17/155 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +QGD  +++ YCG G  SL LA+    V+ VEI   ++E A+ N   N   N       +
Sbjct: 310 LQGDERVIDAYCGIGTISLFLAQKARAVMGVEIVPQAIEDAKRNAVLNGFTNTYFEAGPA 369

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCN 324
           +E        R +   K+ D+       + VDPPR G D+A  T  + Q    ++Y+SCN
Sbjct: 370 EEVI-----PRWYKEGKEADV-------LVVDPPRKGCDEALLTTILEQRPKRVVYVSCN 417

Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
           P +L RDL IL +  +  + +   D FP++ H E 
Sbjct: 418 PATLARDLRILENGGYQTQEIQPVDMFPHSTHCEA 452


>gi|160946481|ref|ZP_02093690.1| hypothetical protein PEPMIC_00445 [Parvimonas micra ATCC 33270]
 gi|158447597|gb|EDP24592.1| hypothetical protein PEPMIC_00445 [Parvimonas micra ATCC 33270]
          Length = 450

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 23/213 (10%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           K  I   ++Y+ E++      L ++    SF QPN    +++    +     I+  ++ +
Sbjct: 257 KINIIFGKEYITEKIF----DLEFKVTPFSFFQPNVFGAINLYSKAIELCGDIENKVVFD 312

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G    ++AR    V  +EI + +VE+A  +   N + N   +     E  +    
Sbjct: 313 LYSGTGTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDVLEEIE---- 368

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333
               NR + +D+       I VDPPR G++   +  +       I+YISCNP +  RD+ 
Sbjct: 369 ----NRKEMVDV-------IIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQ 417

Query: 334 I-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           I L   + +  L +F+QFP T H E   LL R+
Sbjct: 418 ILLQNGYKLITLKIFNQFPRTVHCEAVALLERR 450


>gi|325836777|ref|ZP_08166244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
 gi|325491155|gb|EGC93444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
          Length = 459

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 94/216 (43%), Gaps = 22/216 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
             KT I     Y+ + +   G  +  R    SF Q N  +    L        G+ G+  
Sbjct: 259 GEKTNIIYGEGYIYDEMNGIGFAISPR----SFYQVNP-VQTETLYSKAVEFAGLTGEEI 313

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  +L LA+H  +V  VEI   ++  A  N   N   N +     S+E   A
Sbjct: 314 VFDAYCGIGTITLFLAQHAKKVYGVEIIPEAIADANMNAKLNGFENTEFAVGKSEEVIPA 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                E   + D+         I VDPPR G D   +  M++A P  I+Y+SC+  +L R
Sbjct: 374 W---IEQGIVPDV---------IVVDPPRKGCDKTLLDTMLEAAPKRIVYVSCDSSTLAR 421

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ IL    + +E     D FP T H+E   LL RK
Sbjct: 422 DIKILVDGGYQLEVAQPVDMFPQTSHVEVVALLTRK 457


>gi|329943219|ref|ZP_08291993.1| tRNA (Uracil-5-)-methyltransferase family protein [Chlamydophila
           psittaci Cal10]
 gi|332287799|ref|YP_004422700.1| putative tRNA(Uracil-5-)-methyltransferase protein [Chlamydophila
           psittaci 6BC]
 gi|313848371|emb|CBY17375.1| putative RNA methyltransferase [Chlamydophila psittaci RD1]
 gi|325507335|gb|ADZ18973.1| putative tRNA(Uracil-5-)-methyltransferase protein [Chlamydophila
           psittaci 6BC]
 gi|328814766|gb|EGF84756.1| tRNA (Uracil-5-)-methyltransferase family protein [Chlamydophila
           psittaci Cal10]
 gi|328915057|gb|AEB55890.1| RNA methyltransferase, TrmA family [Chlamydophila psittaci 6BC]
          Length = 401

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 108/210 (51%), Gaps = 26/210 (12%)

Query: 166 YVDERLTVA--GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221
           ++ ++L++   G + ++     SF QP       ++E +       QG   LL+LYCG G
Sbjct: 205 FIKQKLSLPKDGNSAVFHVRPRSFFQPQTLQGAKIIE-IAKEFMDPQGSETLLDLYCGAG 263

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              ++L+++  +V+ VEI   +V++A+ NI  N   ++  V +   E  +   +  + + 
Sbjct: 264 TIGIMLSKYVKKVIGVEIVPDAVDSAKENILINKKESLIEVHL---EDVKTFCKRHQDHP 320

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNP----DSLCRDLSIL 335
             D+ I         +DPPR G+ +  +  +++  P  I+YISCNP    +  C   S++
Sbjct: 321 APDVAI---------IDPPRCGMQNKVLKYLIRISPKKIIYISCNPKIQFEECC---SLI 368

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + I+++   DQFP++ H+E  +LL R+
Sbjct: 369 SAGYRIKKVQPLDQFPHSPHLENIILLERE 398


>gi|329769944|ref|ZP_08261342.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
           M325]
 gi|328837548|gb|EGF87174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
           M325]
          Length = 445

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 28/219 (12%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213
            +KT+    +DY+ + L      +  R    SF Q N      +    L   K  Q D +
Sbjct: 247 GDKTENLYGKDYITDTLGGIEFKISLR----SFYQVNPIQTEVLYSKALELAKLNQDDTI 302

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ YCG G  SL  A+   +V  +EI + +V  AR N   N++ NV+ +   S++     
Sbjct: 303 IDAYCGIGTISLFAAQKVKKVYGIEIVEAAVLDARENAKNNNITNVEFLLGKSEDV---- 358

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD------ATVGMVQAYPHILYISCNPDS 327
                   +KD+     +   + VDPPR G ++      A++G+      I+Y+SCNP +
Sbjct: 359 --------IKDLISKDVQIDAVIVDPPRKGCEESFLRDLASMGI----EKIVYVSCNPAT 406

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L RD+ I+    + +  +   D FP T H+E   LLV++
Sbjct: 407 LARDMEIMRGLGYKLGAVQPVDMFPGTYHVEAVSLLVKE 445


>gi|307260780|ref|ZP_07542467.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869506|gb|EFN01296.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 442

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q N  +N  M    LEW+ L+A    Q  +L+L+CG GNF+L +A+    V+ VE  +
Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P V  A+ N   + + NV   + +  E               D    S  F  + +DP R
Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G   +   +    P  I+Y+SCNP +L RD   ++   + +++ A+ D FP+T H+E  
Sbjct: 378 NGAFFSLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437

Query: 360 VLLVR 364
            L  +
Sbjct: 438 SLFTK 442


>gi|146293860|ref|YP_001184284.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella putrefaciens
           CN-32]
 gi|226725391|sp|A4Y952|RUMA_SHEPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|145565550|gb|ABP76485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella
           putrefaciens CN-32]
          Length = 450

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 26/186 (13%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q N+ IN  M    ++W+  A       +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 279 GNFVQVNSQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298
              V  AR N  AN+++ +                    +   D+ +  +  +   + +D
Sbjct: 336 AEMVSQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356
           P R+G  ++   + +  P  +LY+SCNP SL RD ++ L   + ++RL L D FP T H+
Sbjct: 381 PARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSTVLLERGYRLQRLGLIDMFPQTHHI 440

Query: 357 ECGVLL 362
           E   L 
Sbjct: 441 EAMALF 446


>gi|291539998|emb|CBL13109.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 492

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 119/271 (43%), Gaps = 38/271 (14%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           Q++ L+ +++ A++     +L ++ +      L+  LH +   +    +   T I   +D
Sbjct: 223 QMEELSGENESALLEGWVKKLCEEKYDGV---LKGILHTKNDSVADTIKNEGTDILFGQD 279

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLE---------L 216
           +  E L      L ++    SF Q N+       E +    +   GD L+         L
Sbjct: 280 FFYEELL----GLKFKITPFSFFQTNS----LGAEVLYQTAREFIGDALDDEANQTVFDL 331

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  + +L+    +V+ VEI + +V AAR N A N + N + +              
Sbjct: 332 YSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNCEFIAG------------ 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
              + LK ID    +   I +DPPR G+    +  +  Y  P ++YISC P SL RDL +
Sbjct: 380 ---DVLKVIDTIGEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMVYISCKPTSLARDLEV 436

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L    + ++++   D FP T ++E   LL +
Sbjct: 437 LQARGYKVKKVQCVDMFPSTGNVETVCLLSK 467


>gi|55820468|ref|YP_138910.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG
           18311]
 gi|55736453|gb|AAV60095.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG
           18311]
          Length = 454

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 157/388 (40%), Gaps = 56/388 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61
           +Y++QL  K D L Q +  F+  N + +         +P HYR + +F I   G  +   
Sbjct: 88  RYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSFGGSVKAG 147

Query: 62  MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102
           +F + +   + ID  +    L  A+M                   I  + T+ +   L +
Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVMIRRALGS 207

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              Q+ ++TS +  ++  L+    L  ++ E      +  +++   I       +T+I  
Sbjct: 208 NQVQLIFVTS-NPVSLTKLVKELTL--SYPEIVTVAVNYNYSKSSVIY----GQETEIIW 260

Query: 163 DRDYVDERL---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
            +D + E +     A     + Q+    T+   G  V  LE   +        L++ YCG
Sbjct: 261 GQDTIQEEVLDYNFALSPRAFYQLNPKQTEVLYGQAVEALEVDKSE------HLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A+    +  ++I   ++E AR N  +  ++N       +++      +E   
Sbjct: 315 VGTIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE--- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                     YR   + VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  L+ 
Sbjct: 372 ---------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAK 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L +K
Sbjct: 423 VYDVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|325280541|ref|YP_004253083.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM
           20712]
 gi|324312350|gb|ADY32903.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM
           20712]
          Length = 477

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 24/203 (11%)

Query: 175 GRTLIYRQIEN--------SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           GR  I+ ++E         SF Q N+    N++     LA   G Q  + +LY G G  +
Sbjct: 277 GRDHIFEEMEGLKFKIGPKSFYQTNSEQAYNLYSKTRELAGLTG-QETVYDLYTGTGTIA 335

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
             +AR   +V+ +E    ++E A+ N A NH++N        K+   A       ++   
Sbjct: 336 NFIARQARKVIGIEYVPEAIEDAKVNSAINHIDNTIFYAGDMKDVLNASF----ISKHGQ 391

Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
            DI       I  DPPR+G+  D    ++QA P  I+Y+SCN  +  RDL ++ + + + 
Sbjct: 392 PDI-------IITDPPRAGMHPDVVQTILQASPERIVYVSCNSATQARDLQMMDSAYEVI 444

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T H+E  VLL ++
Sbjct: 445 AVQPVDMFPHTHHVENIVLLRKR 467


>gi|284802149|ref|YP_003414014.1| hypothetical protein LM5578_1904 [Listeria monocytogenes 08-5578]
 gi|284995291|ref|YP_003417059.1| hypothetical protein LM5923_1856 [Listeria monocytogenes 08-5923]
 gi|284057711|gb|ADB68652.1| hypothetical protein LM5578_1904 [Listeria monocytogenes 08-5578]
 gi|284060758|gb|ADB71697.1| hypothetical protein LM5923_1856 [Listeria monocytogenes 08-5923]
          Length = 462

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 16/155 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV      +++    
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
             +E             +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL++L+  + I  +   D FP T H+E  +L+ R
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVILMTR 456


>gi|241896472|ref|ZP_04783768.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella
           paramesenteroides ATCC 33313]
 gi|241870194|gb|EER73945.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella
           paramesenteroides ATCC 33313]
          Length = 469

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 93/189 (49%), Gaps = 25/189 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKG-IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N       + + LAA K  + G+  +++ Y G G  SL +A     VL VE+  
Sbjct: 296 NSFYQVNP--QTTEILYKLAADKAELTGNETVIDAYSGIGTISLTIADKVKSVLGVEVVP 353

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V+ A+ N   N+V+NVK     ++E   A +++              +   IFVDPPR
Sbjct: 354 GAVDDAKRNADLNNVHNVKFELGKAEEKMVAWQQD------------GLKPDVIFVDPPR 401

Query: 302 SGLD----DATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIER-LALFDQFPYTRH 355
            GL     DA   M  A   I+YISCNP +L RD++      +TI+  +   DQFP T H
Sbjct: 402 KGLTTELIDAASAM--APSKIVYISCNPATLVRDVAQFKENGYTIKGDVQPVDQFPQTTH 459

Query: 356 MECGVLLVR 364
           +E   +L R
Sbjct: 460 IESVTVLER 468


>gi|226940771|ref|YP_002795845.1| RumA [Laribacter hongkongensis HLHK9]
 gi|226715698|gb|ACO74836.1| RumA [Laribacter hongkongensis HLHK9]
          Length = 516

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 25/204 (12%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
           LD   +  RL   G  + Y+  E  FTQ N GIN  ++   L       G+ + +++CG 
Sbjct: 245 LDAPALCYRLPEFGVEMPYKPTE--FTQVNPGINRVLVSRALKLLDPQPGERIADMFCGL 302

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNF+L +AR    VL +E ++  +E A  N   N +      RM++              
Sbjct: 303 GNFTLPIARSGAVVLGMEGSQQLIERAVQNATHNGLEKTVRYRMAN-------------- 348

Query: 281 RLKDIDIHSY----RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL 335
            L D+   S+    RF  + +DPPR G       +    P  I+Y+SC+P +L RD ++L
Sbjct: 349 -LFDVTPESFAKLGRFDKMLIDPPRDGAVALCKSLGDNGPKRIVYVSCSPSTLARDAAVL 407

Query: 336 STT--HTIERLALFDQFPYTRHME 357
             T  +T+    + + FP+T H+E
Sbjct: 408 VHTQGYTLRAAGIVNMFPHTAHVE 431


>gi|89095077|ref|ZP_01168004.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92]
 gi|89080638|gb|EAR59883.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92]
          Length = 449

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q NA +N  M+   +        D +L+L+ G GNFSL LA     V+ VE  +  V+
Sbjct: 281 FIQVNASVNTQMINRAMDWLDLKDNDRVLDLFSGVGNFSLPLATKAGSVIGVEGVEDMVQ 340

Query: 246 AARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A+ N     +NN +  R   SK+             LK +  +   F  I +DPPR+G 
Sbjct: 341 RAQNNAKQAGLNNCEFYRADLSKD-------------LKALPWYKQGFSKILIDPPRTGA 387

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            +    + Q     ILY+SCNP +L RD   ++   +   +  + D FP+T H+E  VL 
Sbjct: 388 LEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKASKFCVMDMFPHTSHVESLVLF 447

Query: 363 VR 364
            +
Sbjct: 448 EK 449


>gi|315655450|ref|ZP_07908350.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490390|gb|EFU80015.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 413

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 16/205 (7%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
           V E ++V  RT  YR    SF Q +      +   +L A   ++G +  ELY G+G FSL
Sbjct: 216 VRETVSVGERTFTYRIFAGSFWQTDRRAPATLAAALLGAIGEVEGFEAWELYSGSGLFSL 275

Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            LA+      R+  VE   P+ ++A YN+A    + V++ R    + +  + R      +
Sbjct: 276 FLAQAVGAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRR---GDVSPQLLRSLPMGEM 332

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYI-SCNPDSLCRDLSIL-STTH 339
                   +   +  DPPRSGL  A    + A +P ++ + SC+P S  RDL  +    +
Sbjct: 333 VS------QGTLVVADPPRSGLGKAVARAICAQHPDLVALFSCDPVSCARDLETMRQLGY 386

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            ++   +FD FPYT H+EC  L+ R
Sbjct: 387 RVKTWRVFDLFPYTSHVECVCLMTR 411


>gi|14521350|ref|NP_126826.1| putative RNA methyltransferase [Pyrococcus abyssi GE5]
 gi|50401700|sp|Q9UZK1|Y1145_PYRAB RecName: Full=Uncharacterized RNA methyltransferase PYRAB11450
 gi|5458568|emb|CAB50056.1| RNA methyltransferase, putative [Pyrococcus abyssi GE5]
          Length = 410

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 35/236 (14%)

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVA----GRTLIYRQIE--------NSFTQPN 191
            R+   +  G A+     L RD  D+   +     G   I   IE        ++F Q N
Sbjct: 196 GREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRESIEGLVYLIHPSTFFQTN 255

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +     +L+ V +  +G +  +L+LY G G FSL LA+    V  VE+ + SV  A+ + 
Sbjct: 256 SYALPILLKAVESFAEGSK--VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSA 313

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N ++   I                   R +D  +  Y  +T+ VDPPR GL D +  +
Sbjct: 314 EVNSLDVSFIP-----------------GRAEDAKLKGY--ETLIVDPPRKGLKDFSKRI 354

Query: 312 VQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +  P +++Y+SCNP     D  + LS  + IE   L D FP+T H+E  V L R+
Sbjct: 355 AKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLIDMFPHTPHVEAVVKLRRR 410


>gi|260905687|ref|ZP_05914009.1| 23S rRNA methyluridine methyltransferase [Brevibacterium linens
           BL2]
          Length = 401

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 26/193 (13%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFD-----RVLAVEI 239
           SF Q N  + + +   V A    I    L +LYCG G F+L  A         RV  VE+
Sbjct: 222 SFFQTNTDVAIGLYNQVAAWVDEIAPSSLWDLYCGVGGFALYCAGTTGQQSPRRVTGVEL 281

Query: 240 AKPSVEAARYNIA-----ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           ++ ++E+A+ +       +     V+ +   + EF +A     E            R   
Sbjct: 282 SEQAIESAKISAVELGFDSQSGATVEFIADDATEFAEANLASGE------------RPDC 329

Query: 295 IFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+    +T        HI+Y SCNP +L +DL  + + +T+ER  +FD FP+
Sbjct: 330 VIVNPPRRGIGARLSTALEDSGVEHIVYSSCNPLTLAKDLDQMPS-YTVERARVFDMFPH 388

Query: 353 TRHMECGVLLVRK 365
           T+H+E  V+L R+
Sbjct: 389 TKHLEVAVVLQRR 401


>gi|195440654|ref|XP_002068155.1| GK12558 [Drosophila willistoni]
 gi|194164240|gb|EDW79141.1| GK12558 [Drosophila willistoni]
          Length = 612

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 16/185 (8%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           G NV   + +  A       +L++ CG G  +L  A+H  +VL VEI   +++ A +N  
Sbjct: 410 GANVLYQKAIDLAAPTKDSTVLDICCGTGTIALSFAKHCKKVLGVEIVPDAIKDAEFNAE 469

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           AN + N K    ++ +F ++M  E     L D ++         VDPPR+GL + ++  +
Sbjct: 470 ANGIKNCKFFTGNADDFIKSMVHE----ALYDQEVGKKGDLIAIVDPPRAGLHNRSIAAI 525

Query: 313 Q---AYPHILYISCNPDSLCRDLSILSTTHTIE--------RLAL-FDQFPYTRHMECGV 360
           +   A   ++Y+SCNP    R+   L+   + +        + AL  D FP+T H E  +
Sbjct: 526 RSASAITRLVYVSCNPHIAKRNFIELARPESKQYKGEPFYPKTALAVDMFPHTSHTELVI 585

Query: 361 LLVRK 365
           L  R+
Sbjct: 586 LFERE 590


>gi|283769200|ref|ZP_06342104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
 gi|283104176|gb|EFC05555.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
          Length = 442

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++LYCG G   ++ A+   +V+ +EI   +++ A+ N   N  +N++   M +++  + 
Sbjct: 298 VVDLYCGTGTIGILAAKIAKKVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKK 357

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           +   +E      ID+       + VDPPR G    T+  +Q      ++YISC+P +L R
Sbjct: 358 IVETKE-----SIDV-------VIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLAR 405

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L S    +E +   D FP T H+EC  L+ R
Sbjct: 406 DLEFLQSMGFKVETVQPVDLFPQTVHVECIALIQR 440


>gi|222151850|ref|YP_002561010.1| tRNA (uracil-5-)-methyltransferase family protein [Macrococcus
           caseolyticus JCSC5402]
 gi|222120979|dbj|BAH18314.1| tRNA (uracil-5-)-methyltransferase family protein [Macrococcus
           caseolyticus JCSC5402]
          Length = 459

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 25/210 (11%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV--LAATKGIQGDLLELY 217
           DE + +AG   I  Q+++        SF Q N    V +   V   AA  G Q ++++ +
Sbjct: 258 DETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEVRDAAALTG-QENVVDAF 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   + LA +   V  ++  +  +  A YN   N  +N K     + E         
Sbjct: 317 CGTGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEVGDASE--------- 367

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL 335
              +L +     +    I VDPPR+GL +AT+ ++ +  P   +Y SCNP +L +DL+ L
Sbjct: 368 ---KLNEWIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLAHL 424

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +    +E +   D FP T  +E  V L RK
Sbjct: 425 TKAFQVEYIQPVDMFPQTAQVEAVVKLTRK 454


>gi|224007631|ref|XP_002292775.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971637|gb|EED89971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 387

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 90/198 (45%), Gaps = 20/198 (10%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD----LLELYCGNGNFSLVLAR 229
           + L +R    +F Q N  +   M++ V+  A  K   G+    L++ YCG+G F+L  + 
Sbjct: 199 KDLTFRFQAGNFFQNNPFMLPKMVDLVVDAATIKSSSGEAMTHLIDCYCGSGLFALGCSS 258

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
            FD  + +E+   +V+ AR N   N + N   V  S++              L    +  
Sbjct: 259 SFDVCVGIEVNDKAVQEARANAELNGIKNCDFVSASAEAIF-----------LSKDPVKG 307

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLAL 346
                + VDPPR G  +  +  +  Y    ++Y+SC+P +  RD   L +  + I  +  
Sbjct: 308 KESTVVVVDPPRKGCSEEFLEQLDEYKPQRVVYMSCDPATQARDAKFLVAHGYDIVSVQP 367

Query: 347 FDQFPYTRHMECGVLLVR 364
           FD FP TRH+EC  +  R
Sbjct: 368 FDLFPQTRHIECLAIFER 385


>gi|118580724|ref|YP_901974.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118503434|gb|ABK99916.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter propionicus DSM
           2379]
          Length = 493

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 15/148 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G  +L LAR   RV+ VE+ + +VE AR N   N ++N         E  + 
Sbjct: 342 VLDLYCGIGGIALTLARRARRVIGVEVVEAAVEDARRNARMNGISNCVFQAGDVAEQLEE 401

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCR 330
           +  + E      +D+       + ++PPR G D+  +  V A     +LY+SC+P +L R
Sbjct: 402 LAEDGE-----GVDV-------VVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLAR 449

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHME 357
           DL++L S  +    +   D FP+T H+E
Sbjct: 450 DLNLLKSLGYVCVEVQPVDMFPHTMHVE 477


>gi|330443892|ref|YP_004376878.1| tRNA (Uracil-5-)-methyltransferase [Chlamydophila pecorum E58]
 gi|328807002|gb|AEB41175.1| tRNA (Uracil-5-)-methyltransferase [Chlamydophila pecorum E58]
          Length = 396

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 20/206 (9%)

Query: 166 YVDERLTVA--GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221
           Y+ + LT+   G +  +     SF QP       +++ V       QG   LL+LYCG G
Sbjct: 200 YIQQTLTLPSDGSSATFNIRPKSFFQPQTLQAARIIDTVKEFINP-QGTEILLDLYCGVG 258

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              ++LA +  +V+ VE    ++ +AR NI  NH  N   V +   E T+   ++  +  
Sbjct: 259 TLGIMLAPYVQKVIGVENVPEAILSARENILINHQENRMEVFL---EDTKTFCKKLPYTC 315

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD-LSILSTT 338
             DI         I VDPPR GL +  +  +     P ++YISCNP +  ++   ++   
Sbjct: 316 PPDI---------IIVDPPRCGLQNKALKHILKIGAPKLVYISCNPRTQFQECFQLIHAG 366

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           ++I+ +   DQFP++ H+E  +LL R
Sbjct: 367 YSIKAMQPIDQFPHSPHLENILLLER 392


>gi|227509977|ref|ZP_03940026.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227190583|gb|EEI70650.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 456

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 17/179 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           NSF Q N      + +  +   +  + D+ ++ YCG G  SL LA+   +V  VEI   +
Sbjct: 282 NSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEA 341

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N ++N K+V   ++E            +L        +   I VDPPR G
Sbjct: 342 IEDAKRNAHINKISNCKVVVAKAEE------------QLGKWQKAGLKPDVIVVDPPRKG 389

Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMEC 358
           LD++ +  + +  P  ++Y+SCNP +L RD  + +       + +   DQFP T H+E 
Sbjct: 390 LDESLIESVAEMSPQRLIYVSCNPATLARDAKLFAEHGYQINQPIQPVDQFPQTVHVES 448


>gi|288576123|ref|ZP_05978225.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa ATCC
           25996]
 gi|288566282|gb|EFC87842.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa ATCC
           25996]
          Length = 458

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 154/361 (42%), Gaps = 41/361 (11%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD-QQTKE 69
           E+QL E++ ++R   +      L      P HYR RA   I  D      I F  +++ E
Sbjct: 114 EEQL-ERIGKIRPEQI------LPAIYGTPWHYRDRARLSISKDAGGRLKIGFKAKKSHE 166

Query: 70  RMRIDYFMPGSLLINALMIEMMATIR--LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + +D  M    ++ A + E +  I+  L+ L+   L  I++  S+    +      +  
Sbjct: 167 VIDVDSCM----VLPAHISEKLPKIKQMLQSLIDLDLLFIEFFNSEKLTVLNICSRKKPP 222

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--- 184
               R+        L   K Q Q+  +A + +    + +  +     G  L   ++E   
Sbjct: 223 SQKLRQLEKWFDTILGCEKKQWQIWLQAGRQEA---QPFYPKDCQPLGYALPEFEVEMPY 279

Query: 185 --NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIA 240
               FTQ NAG+N  M+   L     IQ +  + +L+CG GNFS+ +A+    V+ +E  
Sbjct: 280 KPGDFTQINAGLNGVMVGRALKLLD-IQKNERIADLFCGLGNFSIPMAKSGAEVVGIEGE 338

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDP 299
              VE AR N +AN              F +    E +     +  + S+ +F  + +DP
Sbjct: 339 GSLVERARNNASANGC------------FDRVSFSEADLFETDETVLASWGQFDKMLLDP 386

Query: 300 PRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           PRSG       +   Y    I+Y+SCNP +  RD  +L +  + ++ + + + F  T H+
Sbjct: 387 PRSGAYAVVKSLHAPYLPVKIVYVSCNPATFARDAEVLVNKGYRLKFVGVMNMFAQTSHV 446

Query: 357 E 357
           E
Sbjct: 447 E 447


>gi|120598069|ref|YP_962643.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. W3-18-1]
 gi|143582575|sp|A1RHE4|RUMA_SHESW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120558162|gb|ABM24089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp.
           W3-18-1]
          Length = 450

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 26/186 (13%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q N+ IN  M    ++W+  A       +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 279 GNFVQVNSQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298
              V  AR N  AN+++ +                    +   D+ +  +  +   + +D
Sbjct: 336 AEMVSQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356
           P R+G  ++   + +  P  +LY+SCNP SL RD ++ L   + ++RL L D FP T H+
Sbjct: 381 PARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSAVLLERGYRLQRLGLIDMFPQTHHI 440

Query: 357 ECGVLL 362
           E   L 
Sbjct: 441 EAMALF 446


>gi|302873306|ref|YP_003841939.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
 gi|302576163|gb|ADL50175.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
          Length = 472

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 21/165 (12%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + + YCG G  SL L++   +V  VEI + ++E A  N   N ++N +     
Sbjct: 320 GLTGNEVVFDAYCGTGTISLFLSKKASKVYGVEIIEAAIENANINAKENKIDNAEFFVGK 379

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321
            ++    +  +              +   + VDPPR G +    DA V M  +   I+Y+
Sbjct: 380 CEDVIPKLIAD------------GVKADVVVVDPPRKGCEKSLLDALVSM--SPERIVYV 425

Query: 322 SCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SC+P +L RDL IL    + ++ +   D FP T H+E  VL+ RK
Sbjct: 426 SCDPGTLARDLRILCDMGYDLKEVQPVDMFPETGHVESVVLITRK 470


>gi|325264644|ref|ZP_08131374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
 gi|324030306|gb|EGB91591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
          Length = 567

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 10/185 (5%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  +    L  +     G++G+  + +LYCG G  SL LA+   +V  VEI   +
Sbjct: 283 SFYQVNP-VQTEKLYGLALEYAGLKGNETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQA 341

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E AR N   N + N +     +++      RE       +   H+     I VDPPR G
Sbjct: 342 IEDARNNAEINGIGNAEFYTGRAEDVLPEYYREYAMEHPGE-KAHA---DVIVVDPPRKG 397

Query: 304 LDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGV 360
            +++ +  M +  P  I+Y+SC+  +L RDL  LS   + + R+   DQFP   H+E  V
Sbjct: 398 CEESLLKTMAEMEPDRIVYVSCDSATLARDLKYLSGEGYELVRVRAVDQFPMGVHVETVV 457

Query: 361 LLVRK 365
           LL  K
Sbjct: 458 LLSHK 462


>gi|313892756|ref|ZP_07826337.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442687|gb|EFR61098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 494

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 161/391 (41%), Gaps = 64/391 (16%)

Query: 10  YEQQLAEKVDRLRQMM--LAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL+ K  +++ ++  +  Q P+L    +   EP  YR + +  +             
Sbjct: 131 YEGQLSLKTQKVKDVIERIGHQNPDLVKPALGPKEPWAYRNKMQMPVG------------ 178

Query: 65  QQTKERMRIDYFMPGSLLI----NALMIEMMATIRLEPLLR-AKLFQIDYLTSQSDQAIV 119
             TK  +++ ++  GS  I    N  + +    I  +   + AK F I+     +   I+
Sbjct: 179 -GTKGDIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDEHTGNGIL 237

Query: 120 TLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------------ANKTKICLDRD- 165
             +  R+    W    +   D L H  K+  +L  R              +T + L    
Sbjct: 238 RHVIGRIGQSGWMIILVTATDHLPHQEKWVEKLTERIPQVETIVHNVNGKRTNVILGPKN 297

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
              Y D  +T   + L +    +SF Q N      + +  LA    ++GD  +++ YCG 
Sbjct: 298 NILYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYAD-LKGDETVIDAYCGT 356

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREF 279
           G  SL LA     V+ +EI +P++  AR N   N  +N + IV  ++ E  +  +     
Sbjct: 357 GTISLFLAHKAKHVIGIEIVEPAIINARENAKCNGYDNTEFIVADAAVEMPKLYKA---- 412

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSLCRDLSIL 335
                      R   I  DP R+G  +    +  GM      I+Y+SCNP ++ RD+ IL
Sbjct: 413 ---------GVRADVIVFDPIRAGCKEEVLTSAAGMEPK--RIVYVSCNPATMARDIEIL 461

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +   + ++ +   D FP T H+E   LL RK
Sbjct: 462 THYGYELKEVQPVDMFPMTAHVETVCLLSRK 492


>gi|313678801|ref|YP_004056541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mycoplasma bovis PG45]
 gi|312950249|gb|ADR24844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mycoplasma bovis PG45]
          Length = 440

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 18/153 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  +EI   +V  A+ N  +N +NNV  +          
Sbjct: 296 VIDAYCGIGTISLFLAQKSKKVYGLEIVNEAVINAKENAISNDINNVDFIAG-------- 347

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                  + +K ID    +   + VDPPRSGL D  +  + +     I YISCNP ++CR
Sbjct: 348 -------DVIKSIDKIKEKVDILVVDPPRSGLSDEFLSKILSIRPKEIGYISCNPHTMCR 400

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLL 362
           D++ LS + + I  L   D F  T H+E   +L
Sbjct: 401 DINTLSKSGYEISYLRPCDMFCQTYHIEVVAVL 433


>gi|311067148|ref|YP_003972071.1| putative RNA methyltransferase [Bacillus atrophaeus 1942]
 gi|310867665|gb|ADP31140.1| putative RNA methyltransferase [Bacillus atrophaeus 1942]
          Length = 460

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 15/158 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++     
Sbjct: 315 VIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E                 T+ VDPPR G D+A +  +V+  P  ++Y+SCNP +L R
Sbjct: 375 WYEE------------GITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLAR 422

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL +L    +    +   D FP+T H+E  V L  + S
Sbjct: 423 DLRVLEDGGYATLEVQPVDMFPHTNHVEVTVKLTLRGS 460


>gi|315924682|ref|ZP_07920899.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621581|gb|EFV01545.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 458

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 141/338 (41%), Gaps = 30/338 (8%)

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGS---LLINALMIEMMATIRLE 97
           +HYR +A+F I  +G   Y     Q       ++   P     L++N  + +    I  E
Sbjct: 134 VHYRNKAQFKISEEGIGFYAKGSHQVIPIAHCLNQMTPNDDLILILNQWVKDSQIPIYRE 193

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-RKYQIQL-IGRA 155
                 L  I    ++    +VTLI   L        A RL+++L     + I +   R 
Sbjct: 194 DSGTGNLRGILVRANRRGDIMVTLIAKTLSGVNTERLARRLQESLSELVSFSININPNRG 253

Query: 156 NK-----TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209
           N+     T++      + E  T+ GR   ++    SF Q N      +   V+  A    
Sbjct: 254 NRVLGEETRVIFGAPTISE--TLCGRE--FQISPASFFQVNTEQAEKLYRQVIRYANLTG 309

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  + +LYCG G   + +A    +V  +E    ++  A+ N   N+++N++     S++ 
Sbjct: 310 QESVFDLYCGTGTIGICMADRARKVTGIEAVPEAIADAKENARRNNIDNIQFFCGRSEKI 369

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDS 327
                      RL   D        + VDPPR G     +  + A   P I+Y+SCNP +
Sbjct: 370 MS--------ERLAAGDAAD----VVVVDPPRKGCARLLLETIVASGVPKIVYVSCNPST 417

Query: 328 LCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           L RD   L+   + +E +  FD FP T H+E  VL+++
Sbjct: 418 LARDCRCLADAGYRLEEVTPFDLFPGTGHVETVVLMLK 455


>gi|291562412|emb|CBL41228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [butyrate-producing
           bacterium SS3/4]
          Length = 607

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 153/380 (40%), Gaps = 46/380 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YE+QL  K   + +++  F      I   +P HYR +   H     D   HI+     KE
Sbjct: 155 YEKQLEHKKKEVSELLRPFCRVEEIIGMDDPFHYRNKV--HAVMARDRKGHII-SGVYKE 211

Query: 70  RMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDY-----------LTSQSDQA 117
                  +   L+ N    E++ TIR L P  + K+F  D                + + 
Sbjct: 212 GTHTVLPVETCLIENKKADEIIGTIRELLPSFKMKVFDEDTGYGFLRHVLVRTAHATGEI 271

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +V LI    +  +       LR         +Q +   + + +  ++++V     + G  
Sbjct: 272 MVVLITASPVFPSKNNFVKALRKIHPEITTVVQNVNGRDTSMVLGEKEHV-----LYGPG 326

Query: 178 LI--------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227
            I        +R    SF Q N  +    L  +     G+ G   +++ YCG G   +V 
Sbjct: 327 FIVDVLCGKKFRISSKSFYQINP-VQTEKLYNLAIEAAGLTGKETVVDAYCGIGTIGIVA 385

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A     V+ VE+ K +V  A  N  AN   N++     + +F   M  +   N   D+  
Sbjct: 386 ASAAKEVIGVELNKDAVRDAVTNAKANGEKNIRFYNNDAGKFMVQMASQ---NAHADV-- 440

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT-HTIERL 344
                  +F+DPPRSG  +  +  V       ++Y+SCNP++L RDL+      +  E+ 
Sbjct: 441 -------VFMDPPRSGSTEEFMDAVAILNPDRVVYVSCNPETLARDLAYFKKKGYRAEKA 493

Query: 345 ALFDQFPYTRHMECGVLLVR 364
              DQFP T H+E  VLL +
Sbjct: 494 WAVDQFPATSHVETVVLLSK 513


>gi|307688528|ref|ZP_07630974.1| RNA methyltransferase, TrmA family protein [Clostridium
           cellulovorans 743B]
          Length = 462

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 21/165 (12%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + + YCG G  SL L++   +V  VEI + ++E A  N   N ++N +     
Sbjct: 310 GLTGNEVVFDAYCGTGTISLFLSKKASKVYGVEIIEAAIENANINAKENKIDNAEFFVGK 369

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321
            ++    +  +              +   + VDPPR G +    DA V M  +   I+Y+
Sbjct: 370 CEDVIPKLIAD------------GVKADVVVVDPPRKGCEKSLLDALVSM--SPERIVYV 415

Query: 322 SCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SC+P +L RDL IL    + ++ +   D FP T H+E  VL+ RK
Sbjct: 416 SCDPGTLARDLRILCDMGYDLKEVQPVDMFPETGHVESVVLITRK 460


>gi|307256341|ref|ZP_07538124.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865167|gb|EFM97067.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 442

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q N  +N  M    LEW+ L+A    Q  +L+L+CG GNF+L +A+    V+ VE  +
Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P V  A+ N   + + NV   + +  E               D    S  F  + +DP R
Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G       +    P  I+Y+SCNP +L RD   ++   + +++ A+ D FP+T H+E  
Sbjct: 378 NGAFFCLDHLAALNPETIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437

Query: 360 VLLVR 364
            L  +
Sbjct: 438 SLFTK 442


>gi|303252554|ref|ZP_07338717.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247305|ref|ZP_07529353.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648522|gb|EFL78715.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856149|gb|EFM88304.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 442

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q N  +N  M    LEW+ L+A    Q  +L+L+CG GNF+L +A+    V+ VE  +
Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P V  A+ N   + + NV   + +  E               D    S  F  + +DP R
Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G       +    P  I+Y+SCNP +L RD   ++   + +++ A+ D FP+T H+E  
Sbjct: 378 NGAFFCLDHLAALNPETIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437

Query: 360 VLLVR 364
            L  +
Sbjct: 438 SLFTK 442


>gi|15924887|ref|NP_372421.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927471|ref|NP_375004.1| hypothetical protein SA1713 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268369|ref|YP_001247312.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394431|ref|YP_001317106.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
 gi|156980213|ref|YP_001442472.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253734995|ref|ZP_04869160.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255006684|ref|ZP_05145285.2| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257793749|ref|ZP_05642728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9781]
 gi|258408891|ref|ZP_05681173.1| RNA methyltransferase [Staphylococcus aureus A9763]
 gi|258421005|ref|ZP_05683936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9719]
 gi|258430023|ref|ZP_05688393.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|258443459|ref|ZP_05691801.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|258445317|ref|ZP_05693508.1| RNA methyltransferase [Staphylococcus aureus A6300]
 gi|258447881|ref|ZP_05696015.1| RNA methyltransferase [Staphylococcus aureus A6224]
 gi|258453314|ref|ZP_05701299.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A5937]
 gi|269203550|ref|YP_003282819.1| rRNA methyltransferase RumA [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894564|ref|ZP_06302792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8117]
 gi|282928070|ref|ZP_06335677.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A10102]
 gi|295407277|ref|ZP_06817076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8819]
 gi|296276906|ref|ZP_06859413.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246197|ref|ZP_06930048.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8796]
 gi|51316731|sp|Q7A4Q9|Y1713_STAAN RecName: Full=Uncharacterized RNA methyltransferase SA1713
 gi|51316908|sp|Q99SY9|Y1897_STAAM RecName: Full=Uncharacterized RNA methyltransferase SAV1897
 gi|13701690|dbj|BAB42983.1| SA1713 [Staphylococcus aureus subsp. aureus N315]
 gi|14247669|dbj|BAB58059.1| RNA methyltransferase homolog [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741438|gb|ABQ49736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946883|gb|ABR52819.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722348|dbj|BAF78765.1| RNA methyltransferase homolog [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253727177|gb|EES95906.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257787721|gb|EEV26061.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9781]
 gi|257840338|gb|EEV64800.1| RNA methyltransferase [Staphylococcus aureus A9763]
 gi|257842953|gb|EEV67371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9719]
 gi|257849617|gb|EEV73585.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|257851344|gb|EEV75284.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|257855835|gb|EEV78759.1| RNA methyltransferase [Staphylococcus aureus A6300]
 gi|257858813|gb|EEV81682.1| RNA methyltransferase [Staphylococcus aureus A6224]
 gi|257864522|gb|EEV87265.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A5937]
 gi|262075840|gb|ACY11813.1| rRNA methyltransferase RumA [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590134|gb|EFB95215.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A10102]
 gi|282763051|gb|EFC03183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8117]
 gi|285817577|gb|ADC38064.1| RNA methyltransferase, TrmA family [Staphylococcus aureus 04-02981]
 gi|294967852|gb|EFG43882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8819]
 gi|297176904|gb|EFH36161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8796]
 gi|312830269|emb|CBX35111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129294|gb|EFT85288.1| hypothetical protein CGSSa03_08530 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329724825|gb|EGG61329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 453

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   S+E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|239825990|ref|YP_002948614.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70]
 gi|239806283|gb|ACS23348.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70]
          Length = 460

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 15/164 (9%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           AA  G +  +++ YCG G   L LA+    +  ++    ++E A+ N   +   N   V 
Sbjct: 308 AALTGTE-KVVDAYCGVGTIGLWLAKDAGEIRGMDTIPEAIEDAKKNAKKHGFTNAMYVT 366

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYI 321
             ++       +E             ++   I VDPPR+G D   +  +++  P  ++Y+
Sbjct: 367 GKAEALLPKWVKE------------GWKPDVIVVDPPRTGCDQQLLQTILRVKPKTVVYV 414

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP SL RD+ +LS  +T++ +   D FP+T H+EC   LV K
Sbjct: 415 SCNPSSLARDVDVLSERYTVDYIQPVDMFPHTAHVECVSRLVLK 458


>gi|317470873|ref|ZP_07930254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
           3_2_56FAA]
 gi|316901700|gb|EFV23633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
           3_2_56FAA]
          Length = 452

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 93/211 (44%), Gaps = 29/211 (13%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217
           D+  T+ G    Y +I          SF Q N+ +   +L        G   D  + +LY
Sbjct: 257 DQMETIYGEDFFYEEILGLKFKISPFSFFQTNS-LGAEVLYETAREYVGETKDKVIFDLY 315

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G  + +LA    +V+ VEI + +VEAAR N   N + N + +               
Sbjct: 316 SGTGTIAQMLAPVAKKVVGVEIVEEAVEAARENAGFNGLENCEFIAG------------- 362

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
             + LK ID    +   I +DPPR G+    +  +  +    ++YISC P SL RDL I 
Sbjct: 363 --DVLKVIDELEDKPDFIVLDPPRDGIHPKAIQKIIDFGVEKMVYISCKPTSLARDLEIF 420

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRK 365
               + +ER    D FP T H+E  VLL RK
Sbjct: 421 REAGYEVERGECVDMFPSTVHVETVVLLERK 451


>gi|167037122|ref|YP_001664700.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115540|ref|YP_004185699.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855956|gb|ABY94364.1| RNA methyltransferase, TrmA family [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928631|gb|ADV79316.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 450

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 31/237 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           RL   LH +           K  +   +DY+ E L      L ++    SF Q N+    
Sbjct: 237 RLVGVLHTQNDSWSDAVVCEKLNVLYGKDYLIEELL----GLKFKISAFSFFQTNS---- 288

Query: 197 HMLEWVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +  E +    +   GD+      +LY G G   +++A    +V+ +E+ + +V +AR N 
Sbjct: 289 YGAEKLYETVREFAGDVSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENA 348

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N + N   +   + + +Q ++  +E            +   + VDPPRSG++   +  
Sbjct: 349 KLNGLENCTFI---AGDVSQKLKEIKE------------KPDVVIVDPPRSGINPKALED 393

Query: 312 VQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +  +    I+Y+SCNP+SL RDL  LS   + ++++   D FP+T H+E  VL+ RK
Sbjct: 394 IVKFNAEKIVYVSCNPESLVRDLKTLSEDVYKVKKVKCVDMFPHTYHVETVVLIERK 450


>gi|167752279|ref|ZP_02424406.1| hypothetical protein ALIPUT_00523 [Alistipes putredinis DSM 17216]
 gi|167660520|gb|EDS04650.1| hypothetical protein ALIPUT_00523 [Alistipes putredinis DSM 17216]
          Length = 469

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 20/206 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAG--INVHMLEWVLAATKGIQGDLLELYCGNG 221
           +D++ ER+      L ++    SF Q N+     ++ +    AA  G +  L +LY G G
Sbjct: 280 KDHIIERM----EGLQFKVGPKSFYQTNSAQAYELYKVARDFAALTGKE-ILYDLYTGTG 334

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +   A    +V+ VE    ++E AR N   N + N        K          EF R
Sbjct: 335 TIANFCAARCAKVVGVEYVPEAIEDARINSTLNGIGNTVFYAGDMKAVLSD-----EFIR 389

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTH 339
                  + R   I +DPPR+G+D+  + ++ +A P  I+Y+SCNP +  RDL+++   +
Sbjct: 390 ------RNGRPDVIILDPPRAGVDEPVIDVILRAAPERIVYVSCNPATQARDLALMDGAY 443

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E +   D FP+T H+E  V LVR+
Sbjct: 444 RVEAVQPVDMFPHTHHVENVVKLVRR 469


>gi|157374425|ref|YP_001473025.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|226725393|sp|A8FSS4|RUMA_SHESH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|157316799|gb|ABV35897.1| RNA methyltransferase, TrmA family [Shewanella sediminis HAW-EB3]
          Length = 442

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q NA IN  M+    +W+          +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 272 GNFIQVNAAINESMVKQAVDWLSVKP---NERVLDLFCGVGNFSLPLAKSGAEVIGVEGV 328

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V+ AR N A + ++NV        + +  + +E    ++            + +DP 
Sbjct: 329 PEMVKQARENAADSGLDNVSFFHT---DLSADLSKETWLGKV----------DKLLLDPA 375

Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358
           R+G  ++   + +  P  I+Y+SC+P SL RD   +L   + +++L L D FP T H+E 
Sbjct: 376 RAGAFESLQWLKKMKPKAIVYVSCDPSSLARDSEPLLKHGYKLKKLGLIDMFPQTHHIEA 435

Query: 359 GVLL 362
             L 
Sbjct: 436 MALF 439


>gi|157691537|ref|YP_001485999.1| tRNA (uracil-5-)-methyltransferase [Bacillus pumilus SAFR-032]
 gi|157680295|gb|ABV61439.1| tRNA (uracil-5-)-methyltransferase [Bacillus pumilus SAFR-032]
          Length = 461

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   + L+     V  +++ K S++ A+ N   + + N   V  +++ +   
Sbjct: 319 VVDAYCGVGTIGMWLSDGAKEVRGMDVIKESIDDAKKNAKKHGMKNATYVTGTAEHWLPK 378

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
             +E             +R   I VDPPR+G +   +  V Q  P  ++Y+SCNP +L +
Sbjct: 379 WVKE------------GFRPDVIVVDPPRTGCERTFLDTVKQVKPKRLVYVSCNPSTLAK 426

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  +S  + IE +   D FP+T H+E  V LV+K
Sbjct: 427 DLEYISKDYKIEYMQPVDMFPHTSHVETVVSLVKK 461


>gi|227500125|ref|ZP_03930196.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC
           35098]
 gi|227217840|gb|EEI83137.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC
           35098]
          Length = 505

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 24/209 (11%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAG---INVHMLEWVLA-ATKGIQGD--LLELYCGNGNFS 224
           LT+    LI+R  +  F         +N   +E + + A++ ++ D  LL+L+CG+G  S
Sbjct: 225 LTIGDNYLIHRVKDKKFKISKDDFFQVNDSQIENLYSEASQYLEKDKKLLDLFCGSGISS 284

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           + LA   D ++ +EI K +++ A  N  AN + + K +  ++    Q             
Sbjct: 285 MALAN--DHIVGIEINKSAIKDAIENAEANGLKDYKFIAKNANYIDQKF----------- 331

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTI 341
             I   +  T+ +DPPR+GLD   +  +      +I+YISCNP +L RD+   +   + +
Sbjct: 332 --IKKEKIGTVTIDPPRAGLDKEIIKTLAKTQIKNIIYISCNPQTLARDIKRFMDRGYEL 389

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           +R+   D F  + H+E   LL +  +  H
Sbjct: 390 KRIKAVDMFAQSMHVETVALLSKLNTEHH 418


>gi|288925116|ref|ZP_06419052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17]
 gi|288338306|gb|EFC76656.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17]
          Length = 480

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N     H+   V      + GD L  +LY G G  +  +AR   +V+ +E    +
Sbjct: 309 SFYQTNTEQAYHLYS-VAREFSQLTGDELVYDLYTGTGTIANFVAREAKQVIGIEYVPEA 367

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N ++N        K+         EF R         R   I  DPPR+G
Sbjct: 368 IEDAKVNSEINGIDNTLFYAGDMKDILN-----DEFIR------QHGRPDVIITDPPRAG 416

Query: 304 LD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +  D    ++ A P  I+Y+SCNP +  RDL++L   + +E +   D FP+T H+E  VL
Sbjct: 417 MHADVVNTILHAAPRRIVYVSCNPATQARDLNLLDVDYRVEEVQPVDMFPHTPHVENVVL 476

Query: 362 LVRK 365
           L+R+
Sbjct: 477 LIRR 480


>gi|228919254|ref|ZP_04082624.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228840361|gb|EEM85632.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 454

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N   N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNATLNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|194018043|ref|ZP_03056649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
           7061]
 gi|194010288|gb|EDW19864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
           7061]
          Length = 461

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   + L+     V  +++ K S++ A+ N   + + N   V  +++ +   
Sbjct: 319 IVDAYCGVGTIGMWLSDGAKEVRGMDVIKESIDDAKKNAKKHGMKNATYVTGTAEHWLPK 378

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
             +E             +R   I VDPPR+G +   +  V Q  P  ++Y+SCNP +L +
Sbjct: 379 WVKE------------GFRPDVIVVDPPRTGCERTFLDTVKQVKPKRLVYVSCNPSTLAK 426

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  +S  + IE +   D FP+T H+E  V LV+K
Sbjct: 427 DLEYISKDYKIEYMQPVDMFPHTAHVETVVSLVKK 461


>gi|241889432|ref|ZP_04776733.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
 gi|241863975|gb|EER68356.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
          Length = 451

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G     ++R+   V  V+I   ++E A  N+  N++ N   V   + +    
Sbjct: 310 VLDAYCGVGTIGQYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTYVAGDANKIVPR 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCR 330
            +++               F    VDPPR GL      +  V+A   I+Y+SCNP +L R
Sbjct: 370 WKKK------------GINFDVAIVDPPRVGLGPLAKNLLAVEA-KKIVYVSCNPSTLAR 416

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L+  + I R+   D FP T  +E  V L+RK
Sbjct: 417 DLKVLTRKYKIRRIQPVDMFPGTAAVEAVVELIRK 451


>gi|289548942|ref|YP_003473930.1| RNA methyltransferase, TrmA family [Thermocrinis albus DSM 14484]
 gi|289182559|gb|ADC89803.1| RNA methyltransferase, TrmA family [Thermocrinis albus DSM 14484]
          Length = 424

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 18/181 (9%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YR   +SF Q N  +    +  VL   + ++   +E++CG G FSL L++  + + A ++
Sbjct: 251 YRVSADSFLQVNYTLYEEFVNAVLEKVQRVR-KAVEIHCGIGFFSLPLSQRAEFLYASDV 309

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            + +V  A+Y+   N V+ V  V             ER  + LK  ++       + VDP
Sbjct: 310 NQVAVRDAQYSARINSVDKVVFV------------HERAVDTLK--NLAGEVIDLLVVDP 355

Query: 300 PRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356
           PR GL +    ++      +I+Y+SCNP +L RDL +LS   ++++ + L D FP T H+
Sbjct: 356 PREGLSEGETQLILSNKPKNIVYVSCNPSTLARDLKVLSKGGYSLKVIRLVDNFPQTYHV 415

Query: 357 E 357
           E
Sbjct: 416 E 416


>gi|167760470|ref|ZP_02432597.1| hypothetical protein CLOSCI_02844 [Clostridium scindens ATCC 35704]
 gi|167661836|gb|EDS05966.1| hypothetical protein CLOSCI_02844 [Clostridium scindens ATCC 35704]
          Length = 460

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 35/262 (13%)

Query: 118 IVTLIYHRLLDDA----W------RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
           IVT   H  +++A    W       E   ++   LH +   +  + + + T+I   +D+ 
Sbjct: 215 IVTTTEHNFIEEAGGNQWVSQLLSLELDGKIAGILHTKNDSLADVVKDDGTEILYGQDFF 274

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
            E L      L ++    SF Q N+ +   +L        G   D  L +LY G G  + 
Sbjct: 275 YEELL----GLKFKITPFSFFQTNS-LGAEVLYEKTREYIGETKDKVLFDLYSGTGTIAQ 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           ++A    +V+ VEI + +VEAAR N A N ++N              ++   E   + D+
Sbjct: 330 IVAPVAKKVVGVEIVEEAVEAARENAALNGLDNCTFWA------GDVLKVIDELGEVPDV 383

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIE 342
                    I +DPPR G+    +  +  +    ++YI+C P SL RDL +L    + +E
Sbjct: 384 ---------IILDPPRDGVHPKALEKITNFGVERMVYIACKPTSLARDLEMLQGRGYRVE 434

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+   D FP T H+E  VL+ R
Sbjct: 435 RMGCVDLFPGTVHVETVVLMSR 456


>gi|313623417|gb|EFR93632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
           J1-023]
          Length = 459

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG---MVQAYPHILYISCNPDSLC 329
            + E    +  +     +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLQVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454


>gi|291460187|ref|ZP_06599577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417134|gb|EFE90853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 602

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 17/188 (9%)

Query: 186 SFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N      + E VL  +A  G + ++ +LYCG G  SL+L+    RV  +EI   +
Sbjct: 335 SFYQVNPVQTERIYETVLEFSALSGTE-NVFDLYCGIGTISLLLSAAAGRVYGIEIIPDA 393

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   N + N      +++E       E    R   ID+       + VDPPR G
Sbjct: 394 VRDARENAERNGIENAYFFTGAAEELLPRWHAEHPGER---IDL-------VCVDPPRKG 443

Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGV 360
            D+  +  ++   P  ++Y+SC+P +L RD+  L    + + R+  FD FP T H+E  V
Sbjct: 444 CDERCLETIISMSPERLIYVSCDPATLARDIKYLREHGYELRRIRPFDNFPETVHIET-V 502

Query: 361 LLVRKPSG 368
            L+ K SG
Sbjct: 503 CLLSKFSG 510


>gi|289523129|ref|ZP_06439983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503672|gb|EFD24836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 453

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 23/212 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
            +KT+    +D + ER       + +R   + F Q N      M E V    +  +  +L
Sbjct: 259 GSKTQSLFGKDVLVERF----ENIKFRFGVSDFFQVNVLQAFRMFETVAELARDSK-HVL 313

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           ELY G G+ +  LA   + ++AVE  +P+ E+   N+  N +NNV  +   +++  +   
Sbjct: 314 ELYSGVGSMTAFLASFCNDIVAVEEWRPAYESLVSNMTNNGINNVTAICGKAEDVVKTKV 373

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRD 331
                         S  F  + VDPPR+G        +G V +   ++Y+SCNP +L RD
Sbjct: 374 --------------SGHFDIVVVDPPRTGCHKDVLNFIGRVISPKKVIYVSCNPATLARD 419

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLL 362
             IL+   + +E     D FP T H+E  VLL
Sbjct: 420 SKILNEYGYNMENAMPLDMFPQTSHVESVVLL 451


>gi|227554844|ref|ZP_03984891.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis HH22]
 gi|312900324|ref|ZP_07759635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
 gi|312904253|ref|ZP_07763415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|227176013|gb|EEI56985.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis HH22]
 gi|310632349|gb|EFQ15632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|311292512|gb|EFQ71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
 gi|315031445|gb|EFT43377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0017]
 gi|315166923|gb|EFU10940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1341]
 gi|315575356|gb|EFU87547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309B]
 gi|315578799|gb|EFU90990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0630]
 gi|315581386|gb|EFU93577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309A]
          Length = 504

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A  N   N++ N          FT  
Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENAT--------FTAG 410

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501


>gi|307325080|ref|ZP_07604284.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces
           violaceusniger Tu 4113]
 gi|306889226|gb|EFN20208.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces
           violaceusniger Tu 4113]
          Length = 447

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER   AGRT  +R  E  F Q +      ++E V+      QG+  L+LYCG G 
Sbjct: 255 RPFVRER--AAGRT--WRVGEAGFWQVHPKAADVLVEAVMQGLMPRQGETALDLYCGVGL 310

Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  +A        VL +E +K SVE AR+N+      +++ VR+   +  Q + R    
Sbjct: 311 FAGAIAERVGERGAVLGIESSKRSVEDARHNL-----QDLERVRIEHGKVEQVLPR---- 361

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
             + + D+       I +DPPR+G    TV  + A     I Y++C+P +L RDL     
Sbjct: 362 TGITEADL-------IVLDPPRAGAGKETVTRLAALGARRIAYVACDPAALARDLKYFRE 414

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             ++  R   FD FP T H+EC  +L
Sbjct: 415 EGYSPRRTRAFDLFPVTHHVECVAVL 440


>gi|302333562|gb|ADL23755.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 453

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D+ +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DVLLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|227329137|ref|ZP_03833161.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 449

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 19/195 (9%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231
           VAG TL +      F Q N  +N  M+   LA      Q  +L+L+CG GNF+L LA+  
Sbjct: 262 VAGLTLAFS--PRDFIQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRA 319

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290
             V+ VE     VE  R N   N ++NV     +   + TQ     + F++         
Sbjct: 320 ASVVGVEGVTALVEKGRENAQRNGLSNVTFFHQNLEDDVTQQPWAAQGFDK--------- 370

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFD 348
               I +DP R+G       + +  P  ++Y+SCN  +L RD  + L+  + +  +A+ D
Sbjct: 371 ----ILLDPARAGAAGVMEQITRLAPERVVYVSCNATTLARDSKVLLAAGYRLANVAMLD 426

Query: 349 QFPYTRHMECGVLLV 363
            FP+T H+E   L +
Sbjct: 427 MFPHTGHLESMALFL 441


>gi|32033638|ref|ZP_00133949.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207796|ref|YP_001053021.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|126096588|gb|ABN73416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 442

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q N  +N  M    LEW+ L+A    Q  +L+L+CG GNF+L +A+    V+ VE  +
Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P V  A+ N   + + NV   + +  E               D    S  F  + +DP R
Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G       +    P  I+Y+SCNP +L RD   ++   + +++ A+ D FP+T H+E  
Sbjct: 378 NGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437

Query: 360 VLLVR 364
            L  +
Sbjct: 438 SLFTK 442


>gi|293392822|ref|ZP_06637140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Serratia odorifera DSM
           4582]
 gi|291424681|gb|EFE97892.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Serratia odorifera DSM
           4582]
          Length = 449

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 21/183 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +    D +L+L+CG GNF+L LAR    V+ +E     V 
Sbjct: 272 FIQVNDAVNQQMVAQALEWLELQPNDRVLDLFCGMGNFTLPLARRAKAVVGIEGVATLVA 331

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
             +YN   N +NN      + ++               D++   +    F  + +DP R+
Sbjct: 332 NGQYNAHKNLLNNASFFHENLED---------------DVERQPWAAQGFDKVMLDPARA 376

Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360
           G       +V+  P  ++Y+SCNP +L RD  + L+  + + R+ + D FP+T H+E   
Sbjct: 377 GAAGVMSHIVKLAPERVVYVSCNPSTLARDSKVLLAAGYRLARVRMLDMFPHTGHLESMA 436

Query: 361 LLV 363
           L +
Sbjct: 437 LFI 439


>gi|320580356|gb|EFW94579.1| tRNA methyltransferase [Pichia angusta DL-1]
          Length = 544

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 24/196 (12%)

Query: 183 IENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           + N F Q N  I   +L++V   LA  +     L++ YCG+G FS+  A    + L VEI
Sbjct: 362 VANEFFQNNNSILPKVLDYVKSNLALDESGDSYLVDAYCGSGLFSISCASSVRKSLGVEI 421

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  S++ A+ N+  N ++N + +   +++  + +    +F + K          ++ +DP
Sbjct: 422 SAHSIKFAKRNVELNDIHNCEFIEGKAEKLFEKI----DFPKDK---------TSVILDP 468

Query: 300 PRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTT------HTIERLALFDQFP 351
           PR G D+  +  + + YP  I+Y+SCN  S  RD+    T       + +E +  FD FP
Sbjct: 469 PRKGCDEVFLRQLAEFYPKRIVYVSCNVHSQARDVEYFLTETEKGKDYKVESIIGFDFFP 528

Query: 352 YTRHMECGVLLVRKPS 367
            T H+E   +L R  S
Sbjct: 529 QTHHVEGVAVLSRATS 544


>gi|313637500|gb|EFS02936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
           S4-171]
          Length = 459

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++    S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFASKVKEVRGIDTIPESIEDAKRNAEKNGLENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA-YPHILYISCNPDSLCR 330
            + E  F +        ++   + VDPPRSG D   +  ++QA    ++Y+SCNP +L R
Sbjct: 366 GKAEDVFPKWMK---EGFKPDAVIVDPPRSGCDQGLIQSLLQAEAKQLVYVSCNPSTLAR 422

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL++L+  + +  +   D FP T H+E  VLL
Sbjct: 423 DLALLAKKYRVRYMQPVDMFPQTAHVETVVLL 454


>gi|313608342|gb|EFR84315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           FSL F2-208]
          Length = 459

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV      +++    
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
             +E             +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLEVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454


>gi|255657938|ref|ZP_05403347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida
           DSM 20544]
 gi|260850131|gb|EEX70138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida
           DSM 20544]
          Length = 457

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 16/158 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  +L LA+    V  +EI KP++  A+ N   N+V N + +   + E    
Sbjct: 312 VIDAYCGTGTITLFLAQKAREVYGIEIVKPAILDAQKNARDNNVRNAEFIVGDATEVMPR 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
           + ++              R   + VDPPR+G  +  +       P  I+Y+SCNP SL R
Sbjct: 372 LYKQ------------GVRADVVVVDPPRAGCTETVLKTFANMQPDRIVYVSCNPASLAR 419

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL++L    +  +++   D FP T H+E  V L+ K S
Sbjct: 420 DLAVLEQLGYKAKKVQPVDMFPMTSHVET-VALIEKVS 456


>gi|299535232|ref|ZP_07048556.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
 gi|298729353|gb|EFI69904.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
          Length = 455

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 19/156 (12%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +QGD  +++ YCG G  SL LA+    V+ VEI   ++E A+ N   N   N       +
Sbjct: 305 LQGDERVIDAYCGIGTISLFLAQKAKTVMGVEIVPQAIEDAKRNALLNGFTNTYFEAGPA 364

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCN 324
           +E        R +   K+ D+       + VDPPR G D+A  T  + Q    ++Y+SCN
Sbjct: 365 EEVI-----PRWYKEGKEADV-------LVVDPPRKGCDEALLTTILEQRPKRVVYVSCN 412

Query: 325 PDSLCRDLSILSTT--HTIERLALFDQFPYTRHMEC 358
           P +L RDL IL     HT E +   D FP++ H E 
Sbjct: 413 PATLARDLRILEDGGYHTQE-IQPVDMFPHSTHCEA 447


>gi|312864156|ref|ZP_07724390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           vestibularis F0396]
 gi|311100157|gb|EFQ58366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           vestibularis F0396]
          Length = 451

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 156/386 (40%), Gaps = 52/386 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHI 61
           +Y++QL  K D L Q +  F+  N + +         +P HYR + +F     G  +   
Sbjct: 88  RYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMEQPQHYRAKLQFQTRSFGGSVKAG 147

Query: 62  MFDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRA 102
           +F + +   + ID  +    L  A+M                   I  + T+ +   L +
Sbjct: 148 LFAEGSHRLINIDDCLVQDELTQAMMNKVTSLLDKYKLPIYNERKISGIRTVMIRRALGS 207

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              Q+ ++TS+S  ++  L+    L   + E      +  +++  +I       +T+I  
Sbjct: 208 NQVQLIFVTSKS-VSLTKLVKELTL--RYPEIVTVAINYNYSKSSEIY----GQETEIIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            +D + E +      L  R    +F Q N      +    + A +  + + L++ YCG G
Sbjct: 261 GQDTIQEEVLDYNFALSPR----AFYQLNPKQTEVLYSQAVEALEVDKDEHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L        +  ++I   ++E AR N  +  + N       +++      +E     
Sbjct: 317 TIGLAFVNKVKSIRGMDIIPEAIEDARKNAKSLGLGNTHYEVGKAEDIIPRWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|268611139|ref|ZP_06144866.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1]
          Length = 416

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 19/160 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   L +A    +V+ VE+   ++E A+ N     ++N +     + E    
Sbjct: 271 LLDLYCGAGAIGLSMADTVGKVIGVEVVPQAIEDAKANAKRAGISNAEFFAGDAGEIAAK 330

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSL 328
              E    R  DI         I +DPPR G D    DA + M  +   I+ ISCNP + 
Sbjct: 331 FAAE---GRKPDI---------IVLDPPRKGCDTLTLDACLEMAPS--RIVMISCNPSTA 376

Query: 329 CRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            RD + L     T++ L   D FP T+H+EC VL+ R+ S
Sbjct: 377 ARDAAYLCENGFTLDVLRPADFFPRTKHVECVVLMSRQKS 416


>gi|29375324|ref|NP_814478.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|256617615|ref|ZP_05474461.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256761497|ref|ZP_05502077.1| RNA methyltransferase [Enterococcus faecalis T3]
 gi|257089155|ref|ZP_05583516.1| RNA methyltransferase [Enterococcus faecalis CH188]
 gi|257418339|ref|ZP_05595333.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
 gi|50401543|sp|Q837V0|Y728_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_0728
 gi|29342784|gb|AAO80548.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
 gi|256597142|gb|EEU16318.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256682748|gb|EEU22443.1| RNA methyltransferase [Enterococcus faecalis T3]
 gi|256997967|gb|EEU84487.1| RNA methyltransferase [Enterococcus faecalis CH188]
 gi|257160167|gb|EEU90127.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
          Length = 457

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454


>gi|291531341|emb|CBK96926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
           70/3]
          Length = 449

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G   L +AR   +++ VEI   ++E A+ N  AN + N + +   + E  + 
Sbjct: 305 VLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARI 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           +               + R   I VDPPR G        + A+  P I+ +SCN  +  R
Sbjct: 365 LHS------------RNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAAR 412

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D +  +   ++ ++    D F  T H+EC VLL +
Sbjct: 413 DCAYFAELGYSTDKCVAVDMFSGTNHVECVVLLTK 447


>gi|224024090|ref|ZP_03642456.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM
           18228]
 gi|224017312|gb|EEF75324.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM
           18228]
          Length = 504

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 26/210 (12%)

Query: 174 AGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNF 223
           +G+  I+ ++E         SF Q N+    + L  V     G++GD L  +LY G G  
Sbjct: 308 SGKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLEGDELVYDLYTGTGTI 366

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRL 282
           +  ++R   +V+ +E    ++E A+ N   N + N        K+  T+   RE      
Sbjct: 367 ANFVSRRARKVIGIEYVPEAIEDAKVNSQINGITNTLFYAGDMKDILTEDFIREHG---- 422

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHT 340
                   R   I  DPPR+G+ +  + ++  A P  I+Y+SCNP +  RDL +L   + 
Sbjct: 423 --------RPDVIITDPPRAGMHNDVINVILAAEPKRIVYVSCNPATQARDLQLLDGKYK 474

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           +  +   D FP+T H+E  VLL ++    H
Sbjct: 475 VTAVQPVDMFPHTHHVENVVLLEKREEPKH 504


>gi|16803743|ref|NP_465228.1| hypothetical protein lmo1703 [Listeria monocytogenes EGD-e]
 gi|224499575|ref|ZP_03667924.1| hypothetical protein LmonF1_07712 [Listeria monocytogenes Finland
           1988]
 gi|224503372|ref|ZP_03671679.1| hypothetical protein LmonFR_12800 [Listeria monocytogenes FSL
           R2-561]
 gi|254829227|ref|ZP_05233914.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254832408|ref|ZP_05237063.1| hypothetical protein Lmon1_13719 [Listeria monocytogenes 10403S]
 gi|254900792|ref|ZP_05260716.1| hypothetical protein LmonJ_13289 [Listeria monocytogenes J0161]
 gi|254913722|ref|ZP_05263734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           J2818]
 gi|254938109|ref|ZP_05269806.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|50401633|sp|Q8Y6I1|Y1703_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1703
 gi|16411157|emb|CAC99781.1| lmo1703 [Listeria monocytogenes EGD-e]
 gi|258601638|gb|EEW14963.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258610721|gb|EEW23329.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|293591737|gb|EFG00072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           J2818]
          Length = 459

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV      +++    
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
             +E             +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454


>gi|117926892|ref|YP_867509.1| RNA methyltransferase [Magnetococcus sp. MC-1]
 gi|117610648|gb|ABK46103.1| 23S rRNA m(5)U-1939 methyltransferase [Magnetococcus sp. MC-1]
          Length = 424

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 163/361 (45%), Gaps = 33/361 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRS-EP-IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           A  V    Q +  F+ P +Q  +S +P   YR R    I+   D  + ++   QT  +  
Sbjct: 89  AAVVKEALQHIGKFENPPMQPLQSAQPETGYRRRCGLKIYWVRD--HAVVGFYQTASKRI 146

Query: 73  IDYFMPGSLLINALMIEMMATIRL---EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           +D  +P   +++  +  ++  IR    E  +R +L Q+D   S  D+  V +I H L   
Sbjct: 147 VD--LPNCPILHPKLDALIHPIRTLVSELSVRERLPQVDL--SCGDEG-VGMILHLLRKL 201

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           + ++  I L    H  K     I    K  +         R +  G++ + + +   FTQ
Sbjct: 202 SAKDKEI-LTTFAHTHKIDQLWIQSGRKEDLTPFISQEPLRYSPDGKSQL-KFMPGDFTQ 259

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            +   N  ++E VLA   G    +L+L+ G GNF+L LAR F RV   E  +P+V+  R 
Sbjct: 260 AHFEQNRQLVEQVLAWI-GQGQRVLDLFSGLGNFTLPLARQFTRVTGYESYEPAVKRGRS 318

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   +     K + +    F++   +    N++            + VDPPR G  +   
Sbjct: 319 NTTLHPSVTFKTMDL----FSETALKTLPLNQV----------DAMVVDPPRDGAVNLAK 364

Query: 310 GMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
            +  A     I+++SC+P +  RD +IL +  +T+E++   D FP T H+E  V L ++P
Sbjct: 365 QIKDAGGPATIVWVSCDPATFARDAAILCAGGYTMEQVKPLDMFPMTSHVEV-VALFKRP 423

Query: 367 S 367
           S
Sbjct: 424 S 424


>gi|217964147|ref|YP_002349825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           HCC23]
 gi|217333417|gb|ACK39211.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           HCC23]
 gi|307571286|emb|CAR84465.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
           monocytogenes L99]
          Length = 458

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV      +++    
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
             +E             +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454


>gi|332879258|ref|ZP_08446955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332682678|gb|EGJ55578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 491

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 24/207 (11%)

Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGN 220
           +T  G   IY Q+EN        SF Q N     + L  V     G+ G  L  +LY G 
Sbjct: 296 ITFRGNDHIYLQMENLRFKVGPKSFYQTNTD-QAYELYKVARDFAGLTGTELVYDLYTGT 354

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +  +A    +V+ +E    ++E A+ N   N + N        K+        +EF 
Sbjct: 355 GTIANFVAGKARKVIGIEYVPEAIEDAKINSQINGIGNTLFFAGDMKDILN-----KEF- 408

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT 338
               I  H  +   I  DPPR+G+  D    ++ A PH I+Y+SCNP +  RDL++L + 
Sbjct: 409 ----ITAHG-QPDVIITDPPRAGMHKDVIETILFAAPHRIVYVSCNPATQARDLALLDSQ 463

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + I  +   D FP+T+H+E  V+L R+
Sbjct: 464 YKIMGVRPVDMFPHTQHVENVVMLERR 490


>gi|307269782|ref|ZP_07551112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|307272542|ref|ZP_07553795.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
 gi|306510827|gb|EFM79844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
 gi|306513892|gb|EFM82494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|315036107|gb|EFT48039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0027]
 gi|329576886|gb|EGG58371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1467]
          Length = 468

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 323 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 375 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 430

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 431 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 465


>gi|257415298|ref|ZP_05592292.1| RNA methyltransferase [Enterococcus faecalis AR01/DG]
 gi|257157126|gb|EEU87086.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG]
          Length = 457

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454


>gi|299140681|ref|ZP_07033819.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735]
 gi|298577647|gb|EFI49515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735]
          Length = 479

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 26/210 (12%)

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218
           E  T  G   IY  +E+        SF Q N     H+   V  A   + G  L  +LY 
Sbjct: 283 ELTTFKGTDFIYETMEDLKFKVGSKSFYQTNTEQAYHLYS-VARAFAALTGKELVYDLYT 341

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +  +A    +V+ +E    ++E A+ N   N ++N        K           
Sbjct: 342 GTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSKVNGIDNTLFYAGDMK----------- 390

Query: 279 FNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL 335
            N L D  IH + R   I  DPPR+G+    V ++  A P  ++Y+SCNP +  RDL ++
Sbjct: 391 -NILTDDFIHEHGRPDVIITDPPRAGMHPDVVQVILNAAPKRVVYVSCNPATQARDLQLM 449

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + +  +   D FP+T H+E  VLL R+
Sbjct: 450 DADYKVTAVQPVDMFPHTPHVENVVLLERR 479


>gi|291556131|emb|CBL33248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
           V10Sc8a]
          Length = 493

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 16/160 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G   L +AR   +++ VEI   ++E A+ N  AN + N + +   + E  + 
Sbjct: 305 VLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARI 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           +               S R   I VDPPR G        + A+  P I+ +SCN  +  R
Sbjct: 365 LHS------------RSLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAAR 412

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKPSG 368
           D +  +   ++ ++    D F  T H+E  VLL  +KP G
Sbjct: 413 DCACFAELGYSTDKCVAVDMFSGTNHVETVVLLSHKKPDG 452


>gi|257086087|ref|ZP_05580448.1| RNA methyltransferase [Enterococcus faecalis D6]
 gi|256994117|gb|EEU81419.1| RNA methyltransferase [Enterococcus faecalis D6]
          Length = 457

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454


>gi|256854405|ref|ZP_05559769.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256709965|gb|EEU25009.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|315151570|gb|EFT95586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0012]
 gi|327534318|gb|AEA93152.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
           OG1RF]
          Length = 468

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 323 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 375 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 430

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 431 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 465


>gi|254992434|ref|ZP_05274624.1| hypothetical protein LmonocytoFSL_04674 [Listeria monocytogenes FSL
           J2-064]
          Length = 459

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
            + E    +  +     +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454


>gi|290894402|ref|ZP_06557365.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|290556063|gb|EFD89614.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
          Length = 459

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV      +++    
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
             +E             +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 375 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454


>gi|315172186|gb|EFU16203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1346]
          Length = 504

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A  N   N++ N          FT  
Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENAT--------FTAG 410

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501


>gi|46907934|ref|YP_014323.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094248|ref|ZP_00231958.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
           H7858]
 gi|226224306|ref|YP_002758413.1| similar to RNA methyltransferase [Listeria monocytogenes Clip81459]
 gi|254932851|ref|ZP_05266210.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|255520198|ref|ZP_05387435.1| hypothetical protein LmonocFSL_03022 [Listeria monocytogenes FSL
           J1-175]
 gi|51316674|sp|Q71YW4|Y1727_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1727
 gi|46881203|gb|AAT04500.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47017376|gb|EAL08199.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
           H7858]
 gi|225876768|emb|CAS05477.1| Putative similar to RNA methyltransferase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293584405|gb|EFF96437.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|328466462|gb|EGF37605.1| RNA methyltransferase [Listeria monocytogenes 1816]
 gi|332312145|gb|EGJ25240.1| hypothetical protein LMOSA_26260 [Listeria monocytogenes str. Scott
           A]
          Length = 459

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
            + E    +  +     +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454


>gi|288817344|ref|YP_003431691.1| RNA methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|288786743|dbj|BAI68490.1| RNA methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|308750951|gb|ADO44434.1| RNA methyltransferase, TrmA family [Hydrogenobacter thermophilus
           TK-6]
          Length = 420

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 154/326 (47%), Gaps = 46/326 (14%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           YR R +F + +         F   T E ++ID      LL++  M +++ +++       
Sbjct: 123 YRTRVQFKVSNGSLGF----FAWGTHELVKIDQ----CLLVHPAMNDLIPSLQELSKKIP 174

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            L ++  L S S+   +  +    + DA  E   +L++ +  +K    ++G  N +K+  
Sbjct: 175 HLQELHVLYSPSEDEFLLKVITPTIYDA--EKLRKLKENVLPKK----VVGIGNYSKLG- 227

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
             D++ +R  + GR+  + Q++N        SF Q N  +   +L  V+   K     ++
Sbjct: 228 --DHLLKRYHI-GRSFTFMQVKNYRYRVSNDSFFQINFTLWEDLLNSVVVRDKR---RVI 281

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           EL+CG G FS+ L+     V++ +    +++ A+YN   N  +N+     S+ +  +   
Sbjct: 282 ELHCGAGFFSIPLSEGNHFVISSDTNATAIKDAQYNAKLNSRDNIVFFHESAHQTLKKHA 341

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDL 332
            E        ID+       +F+DPPR GL    + +V Q  P  I+Y+SCNP +L RDL
Sbjct: 342 GE-------TIDL-------LFLDPPRGGLTTDELSLVLQNKPKEIVYVSCNPTTLARDL 387

Query: 333 S-ILSTTHTIERLALFDQFPYTRHME 357
             ++   ++++ + L D FP T H+E
Sbjct: 388 GKMVRGGYSLKSVRLIDNFPQTYHIE 413


>gi|257420988|ref|ZP_05597978.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|257162812|gb|EEU92772.1| RNA methyltransferase [Enterococcus faecalis X98]
          Length = 457

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454


>gi|256957402|ref|ZP_05561573.1| RNA methyltransferase [Enterococcus faecalis DS5]
 gi|256964435|ref|ZP_05568606.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
 gi|257077602|ref|ZP_05571963.1| RNA methyltransferase [Enterococcus faecalis JH1]
 gi|294779933|ref|ZP_06745314.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
 gi|256947898|gb|EEU64530.1| RNA methyltransferase [Enterococcus faecalis DS5]
 gi|256954931|gb|EEU71563.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
 gi|256985632|gb|EEU72934.1| RNA methyltransferase [Enterococcus faecalis JH1]
 gi|294452982|gb|EFG21403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
          Length = 457

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454


>gi|229546565|ref|ZP_04435290.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX1322]
 gi|307274683|ref|ZP_07555855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
 gi|307284510|ref|ZP_07564672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|307296382|ref|ZP_07576206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|229308310|gb|EEN74297.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX1322]
 gi|306496037|gb|EFM65622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|306503187|gb|EFM72441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|306508612|gb|EFM77710.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
 gi|315029097|gb|EFT41029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4000]
          Length = 504

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A  N   N++ N          FT  
Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENAT--------FTAG 410

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501


>gi|227517694|ref|ZP_03947743.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX0104]
 gi|227074849|gb|EEI12812.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX0104]
          Length = 504

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 410

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501


>gi|330719374|ref|ZP_08313974.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc fallax KCTC
           3537]
          Length = 460

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 25/189 (13%)

Query: 185 NSFTQPNAGINVHMLE--WVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           NSF Q    +N  M E  + LAA K        +++ Y G G   + +A    +VL VE+
Sbjct: 284 NSFYQ----VNPIMTEKLYTLAAQKAQLKPTDIVIDAYSGIGTIGISVANKVKQVLGVEV 339

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +V  A+ N+  NH++N   +   + E   A+ +E+             +   IFVDP
Sbjct: 340 VAGAVADAQLNVDTNHIDNATFLLNDAPE-QMALWQEQ-----------GIKPDVIFVDP 387

Query: 300 PRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS-ILSTTHTIER-LALFDQFPYTRH 355
           PR GL  + +  V   A    +YISCNP +L RD + IL+  + IE  +   DQFP T H
Sbjct: 388 PRRGLTKSLIDSVADMAPKRFVYISCNPVTLVRDTAEILTKGYHIEGDVQTVDQFPQTSH 447

Query: 356 MECGVLLVR 364
           +E  V+  R
Sbjct: 448 IETIVVFTR 456


>gi|255971187|ref|ZP_05421773.1| RNA methyltransferase [Enterococcus faecalis T1]
 gi|255973811|ref|ZP_05424397.1| RNA methyltransferase [Enterococcus faecalis T2]
 gi|257083655|ref|ZP_05578016.1| RNA methyltransferase [Enterococcus faecalis Fly1]
 gi|255962205|gb|EET94681.1| RNA methyltransferase [Enterococcus faecalis T1]
 gi|255966683|gb|EET97305.1| RNA methyltransferase [Enterococcus faecalis T2]
 gi|256991685|gb|EEU78987.1| RNA methyltransferase [Enterococcus faecalis Fly1]
 gi|323479924|gb|ADX79363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           62]
          Length = 457

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454


>gi|254853619|ref|ZP_05242967.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|258606994|gb|EEW19602.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
          Length = 459

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
            + E    +  +     +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454


>gi|228937613|ref|ZP_04100251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228977069|ref|ZP_04137472.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228782686|gb|EEM30861.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228822094|gb|EEM68084.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 454

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N   N++ N +     ++     
Sbjct: 311 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 371 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 419 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 447


>gi|326938107|gb|AEA14003.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 458

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N   N++ N +     ++     
Sbjct: 315 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPK 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 375 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 422

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 423 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 451


>gi|315170705|gb|EFU14722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1342]
          Length = 468

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 323 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 375 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 430

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 431 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 465


>gi|307245126|ref|ZP_07527219.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254082|ref|ZP_07535929.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258537|ref|ZP_07540274.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306854015|gb|EFM86227.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863007|gb|EFM94954.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867441|gb|EFM99292.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 442

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q N  +N  M    LEW+ L+A    Q  +L+L+CG GNF+L +A+    V+ VE  +
Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P V  A+ N   + + NV   + +  E               D    S  F  + +DP R
Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G       +    P  I+Y+SCNP +L RD   ++   + +++ A+ D FP+T H+E  
Sbjct: 378 NGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESL 437

Query: 360 VLLVR 364
            L  +
Sbjct: 438 SLFTK 442


>gi|228970500|ref|ZP_04131151.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228789232|gb|EEM37160.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 465

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  VEI   ++E A  N   N++ N +     ++     
Sbjct: 322 VIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPK 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
             +E     + D         T+ VDPPR G D+A +  ++   P+ ++Y+SCNP +L R
Sbjct: 382 WYKE---GVIAD---------TMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLAR 429

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           DL +L    +  + +   D FP+T H+EC
Sbjct: 430 DLKVLEEGGYKTQEVQPVDMFPHTTHVEC 458


>gi|261367933|ref|ZP_05980816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum
           variabile DSM 15176]
 gi|282570747|gb|EFB76282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum
           variabile DSM 15176]
          Length = 381

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L  A    +VL +E    +V  A  N   N V N +     + E+ + 
Sbjct: 236 VVDAYCGIGTIGLCAASSSGQVLGIERNPAAVRDAIANARRNGVRNARFTCADATEWMEQ 295

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
             R+          +H      +F+DPPR+G   A +G V   A   ++Y+SC+P++L R
Sbjct: 296 AARQ---------ALHP---DVVFLDPPRAGSTPACIGAVARMAPQRVVYVSCDPETLAR 343

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+++ S   +  +R    D FP+TRH+E  VLL R+
Sbjct: 344 DVALFSQKGYRAQRFVPVDLFPHTRHVETIVLLQRE 379


>gi|206896070|ref|YP_002247852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738687|gb|ACI17765.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 438

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + E Y G G F+L+ A+    V+A E  + +V+ A  N A N+V+NV+ +    +E   +
Sbjct: 296 VFEGYSGVGAFTLLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGS 355

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCR 330
           +++               +   + VDPPR+G+  +A   + +  P  I+YISC+P +L R
Sbjct: 356 LQQ---------------KINKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLAR 400

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+S      +++  +   D FP T H+EC  LL+++
Sbjct: 401 DISRFQPFGYSLNHIQAIDMFPQTTHVECVALLIKE 436


>gi|165975769|ref|YP_001651362.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165875870|gb|ABY68918.1| 23S rRNA (Uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 442

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q N  +N  M    LEW+ L+A    Q  +L+L+CG GNF+L +A+    V+ VE  +
Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P V  A+ N   + + NV   + +  E               D    S  F  + +DP R
Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G       +    P  I+Y+SCNP +L RD   ++   + +++ A+ D FP+T H+E  
Sbjct: 378 NGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437

Query: 360 VLLVR 364
            L  +
Sbjct: 438 SLFTK 442


>gi|257876913|ref|ZP_05656566.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC20]
 gi|257811079|gb|EEV39899.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC20]
          Length = 474

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           +++ Y G G   + LA     VL +E+   +V  A+ N   N V NV   +  + K   Q
Sbjct: 331 VVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQ 390

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
            +R                +   +FVDPPR GLD + +    A     I+YISCNP +L 
Sbjct: 391 WLR-------------EGIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLA 437

Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL++ +   +  + +   D FP T H+EC VLL R+
Sbjct: 438 RDLALFAEEGYVTKEVQPVDLFPQTTHVECVVLLERR 474


>gi|313158329|gb|EFR57731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alistipes sp. HGB5]
          Length = 469

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L +LY G G  +   A    RV+ VE    ++  A+ N   N + N        K+    
Sbjct: 326 LYDLYTGTGTIANFCAARCSRVVGVEYVPEAIADAKVNSQINGIGNTVFYAGDMKQV--- 382

Query: 273 MRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329
                    L D  + +  R   I +DPPR+G+D+  +G++ +A P  I+Y+SCNP +  
Sbjct: 383 ---------LSDGFVAANGRPDVIILDPPRAGVDEPVIGVILRAAPRRIVYVSCNPATQA 433

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL++L   + +E +   D FP+T H+E  V LVR+
Sbjct: 434 RDLALLDADYRVEAVQPVDMFPHTHHVENVVKLVRR 469


>gi|229542669|ref|ZP_04431729.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
 gi|229327089|gb|EEN92764.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
          Length = 457

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 17/150 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VEI   ++E A+ N A N + NV+    +++     
Sbjct: 313 VIDAYCGIGTISLFLAQKARKVFGVEIVPEAIEDAKRNAALNGITNVEFEAGTAE---TV 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
           + +  E     D+         + VDPPR G D+A +  + +  P  ++Y+SCNP +L R
Sbjct: 370 IPKWYEAGNKADV---------LVVDPPRKGCDEALLKTILEMKPQKVVYVSCNPATLAR 420

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMEC 358
           DL  L T    T+E +   D FP+T H+E 
Sbjct: 421 DLRFLETGGYRTVE-VQPVDMFPHTTHVEV 449


>gi|299537400|ref|ZP_07050696.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
 gi|298727135|gb|EFI67714.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
          Length = 459

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 157/385 (40%), Gaps = 49/385 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           YE+QL EK D + Q +  +  P L+           +P HYR +++F +  +G  +Y  +
Sbjct: 93  YEKQLIEKRDIVIQALERYAKPLLETIEVRKTLGMDDPWHYRNKSQFQVRKEGKRVYAGL 152

Query: 63  FDQQTKERMRID-----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           F + + + + I+             +    ++  L I +     L  L+R  + +    T
Sbjct: 153 FAEGSNKLLNINDCLVQHPITSKITVATRKILQKLNITIYDGRTLNGLVRTIVVRTGIRT 212

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            ++    V L+  R       E   R++    +     Q I R   + I     + DE +
Sbjct: 213 GETQ---VVLVTTRKEIPHLAELITRMKKIDPSIVSIAQNINREKTSLI-----FGDETV 264

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
            + G+  I+ ++          +F Q N    VH+ + +  AA    +  +++ YCG G 
Sbjct: 265 VLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYDEIKKAAALSGKETVVDAYCGVGT 324

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA     V  +++   S++ AR N   +   + K    +++       +E      
Sbjct: 325 IGLWLADKAKEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLAKWCKE------ 378

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHT 340
                  +    I VDPPR+GL    +  V +  P   +Y SCNP +L +DL  L+  + 
Sbjct: 379 ------GFTPDVITVDPPRTGLAPEFIRTVLKLKPKRFVYTSCNPSTLAKDLQQLTKLYD 432

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +E +   D F  T  +EC   LV K
Sbjct: 433 VEYIQPVDMFAQTAQVECVAKLVLK 457


>gi|315025773|gb|EFT37705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2137]
          Length = 504

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A  N   N++ N          FT  
Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENAT--------FTAG 410

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501


>gi|20808229|ref|NP_623400.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|50401766|sp|Q8R918|Y1812_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1812
 gi|20516825|gb|AAM25004.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 452

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++Y G G  SL  A+    V  +E  K +VE A  N   N V NVK +   +      
Sbjct: 309 VIDVYSGIGTISLFAAKKASFVYGIESVKEAVEDAEKNAQVNGVKNVKFIWGKA------ 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              ERE  +L        + + + VDPPR G D   +  +V   P  I+Y+SCNP +L R
Sbjct: 363 ---EREIAKLYK---EGVKAEVVIVDPPRDGCDKEVIRAIVGINPKRIVYVSCNPSTLAR 416

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L  +   T+E +   D FPYT H+E   L+ R
Sbjct: 417 DLRYLEDAGYRTVE-VQPVDMFPYTYHVESVALVER 451


>gi|312794361|ref|YP_004027284.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181501|gb|ADQ41671.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 451

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 24/210 (11%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           +E + + G + I  +I N        SF Q N+     +   V+   K I  +++ ++Y 
Sbjct: 252 EEDILIWGSSTIKDKIGNLTFEISPKSFFQVNSLQTEVLYSQVVKYLKDIDAEIVFDVYS 311

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  S+ +A    +V A+EI + +VE A+ +   N+++N++ +  S+         E E
Sbjct: 312 GIGTISMFVAPFCKKVYAIEIVEDAVEDAKKSSKNNNISNIEFICGSA---------EIE 362

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335
             RL    I     + + +DPPR G +   +  +     P+I+Y+SCNP +L RD +IL 
Sbjct: 363 IPRLMKSGIIP---QAVILDPPRRGCEKELLESLIEHKIPNIIYVSCNPSTLARDSNILC 419

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + I  +   D FP T H+EC  L  ++
Sbjct: 420 SNGYEILEVQPVDMFPQTFHVECVALFKKR 449


>gi|229548674|ref|ZP_04437399.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|312953113|ref|ZP_07771962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|229306190|gb|EEN72186.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|310628947|gb|EFQ12230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|315146955|gb|EFT90971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4244]
 gi|315153976|gb|EFT97992.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0031]
 gi|315156740|gb|EFU00757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0043]
          Length = 504

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 410

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501


>gi|212224662|ref|YP_002307898.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009619|gb|ACJ17001.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 419

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 24/184 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N+   V+++  V    +G +  +L+LY G G F + LA+    V  +EI   +V
Sbjct: 254 NSFFQTNSYQAVNLVREVSRLVEGEK--VLDLYSGVGTFGVYLAKRGFTVEGIEINPFAV 311

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG 303
           E A  N   N ++ V                   F+  +D D+ +  ++ TI +DPPR+G
Sbjct: 312 EMANRNAELNGIDAV-------------------FSVGEDKDVKNLAKYDTIILDPPRAG 352

Query: 304 LDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L    V  +++  P  I+Y+SCNP +L  +L+ LS  +++E     D FP+T H+E  V 
Sbjct: 353 LHPKLVKKILKDEPQTIVYVSCNPKTLKLNLNELSGKYSVEEAVGLDMFPHTPHIEVVVK 412

Query: 362 LVRK 365
           L  K
Sbjct: 413 LKHK 416


>gi|239638046|ref|ZP_04679005.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603]
 gi|239596329|gb|EEQ78867.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603]
          Length = 453

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A +   V  VE+   +++ A+ N   N   N   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAENAKHVYGVEVVPSAIKDAKQNATINQFENTTFVCGKAEEVILE 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + E              R   + VDPPR G D+  +  +++  P  I+YISCNP +  R
Sbjct: 371 WKSE------------GIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCNPSTQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D  ILS  + ++ +   D FP T H+E   +  RK
Sbjct: 419 DAHILSRQYELKEITPVDMFPQTTHIETVAIFERK 453


>gi|307289579|ref|ZP_07569523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|306499393|gb|EFM68766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|315164578|gb|EFU08595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1302]
          Length = 504

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 410

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501


>gi|238019497|ref|ZP_04599923.1| hypothetical protein VEIDISOL_01366 [Veillonella dispar ATCC 17748]
 gi|237864196|gb|EEP65486.1| hypothetical protein VEIDISOL_01366 [Veillonella dispar ATCC 17748]
          Length = 495

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 162/390 (41%), Gaps = 64/390 (16%)

Query: 10  YEQQLAEKVDRLRQMM--LAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL+ K  +++ ++  +  Q P+L    +   EP  YR + +  +             
Sbjct: 130 YEGQLSLKTQKVKDVIERIGHQNPDLVKPTLGPKEPWAYRNKMQMPVGG----------- 178

Query: 65  QQTKERMRIDYFMPGSLLI----NALMIEMMATIRLEPLLR-AKLFQIDYLTSQSDQAIV 119
             TK  +++ ++  GS  I    N  + +    I  +   + AK F I+     + + ++
Sbjct: 179 --TKGDIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKAFDIEPYDEHTGKGVL 236

Query: 120 TLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------------ANKTKICLDRD- 165
             I  R+    W    +   + L H  K+  +LI R              +T + L    
Sbjct: 237 RHIIGRIGQSGWMIILVTATEQLPHKEKWVEKLIERIPQVETIVHNVNGKRTNVILGPKN 296

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
              Y D  +T   + L +    +SF Q N      + +  LA    ++GD  +++ YCG 
Sbjct: 297 NILYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYAD-LKGDETVIDAYCGT 355

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREF 279
           G  SL LA     V+ +EI +P++  AR N   N  +N + IV  ++ E  +  +     
Sbjct: 356 GTISLFLAHKAKHVIGIEIVEPAIINARENAQRNGYDNTEFIVADAAVEMPKLYKA---- 411

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSLCRDLSIL 335
                      R   I  DP R+G  +    +  GM      I+Y+SCNP ++ RD+ IL
Sbjct: 412 ---------GVRPDVIVFDPIRAGCKEEVLTSAAGMEPK--RIVYVSCNPATMARDIEIL 460

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +   + ++ +   D FP T H+E   LL R
Sbjct: 461 THYGYELQEVQPVDMFPMTAHVEAVALLTR 490


>gi|312864433|ref|ZP_07724665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei
           F0415]
 gi|311100035|gb|EFQ58247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei
           F0415]
          Length = 450

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 156/388 (40%), Gaps = 58/388 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSE----PIHYRMRAEFHIWHDGDDLYHIM 62
           Y++QL  K D ++Q +  FQ     N +I  ++    P HYR + +F   H  D +   +
Sbjct: 89  YKKQLDFKDDIIKQALKKFQPIGYENYEIRPTKGMDNPYHYRAKLQFQTRHFADSVKAGL 148

Query: 63  F----------------DQQTKE------RMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           F                D+ T+E       +   Y +P   + N   I  + TI +    
Sbjct: 149 FASNSHRLVPLESCLVQDELTQEIVNKATELLDKYKIP---IYNERKIAGVRTIMVRKGQ 205

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +   QI ++TS+  +    +   RL        AI    +  +  Y         KT+I
Sbjct: 206 ASSQVQIIFVTSKDIRLTALIKELRLAFPQIVTIAINYNSSKSSEIY-------GEKTQI 258

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCG 219
              ++ ++E +     +L  R    +F Q N     V   E V A       DL++ YCG
Sbjct: 259 LWGKETIEEEVLDYSFSLSPR----AFYQLNPQQTQVLYQEAVAALDAQPDDDLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G      A     V  +++   S+E A+ N     ++N       +++      +E   
Sbjct: 315 VGTIGFAFANKVRSVRGMDVIPESIEDAKENAKTLGLSNTYYETGKAEDIIPKWYQE--- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST 337
                     YR   + VDPPR GLDD  +  ++   P  ++Y+SCN  +L RDL  LS 
Sbjct: 372 ---------GYRASALVVDPPRVGLDDKLLKTIIDVRPAKMVYVSCNASTLARDLVALSQ 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + ++ +   D FP+T  +E  V L +K
Sbjct: 423 VYQVDYIQSVDMFPHTARVEAVVKLRKK 450


>gi|262275255|ref|ZP_06053065.1| RNA methyltransferase TrmA family [Grimontia hollisae CIP 101886]
 gi|262220500|gb|EEY71815.1| RNA methyltransferase TrmA family [Grimontia hollisae CIP 101886]
          Length = 361

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 85/187 (45%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  I   +     EWV    +     + +L+CG G F+L  A     V  +EI 
Sbjct: 193 KSFFQTNPDIAAKLYATAREWV---KEIAPARMWDLFCGVGGFALHCAPVAGAVTGIEIE 249

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++ +A+ + A   ++N+    + S  F+                 H      + V+PP
Sbjct: 250 PEAIASAKRSAAEIGISNLDFDALDSAAFSLC---------------HDTAPDLVLVNPP 294

Query: 301 RSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R GL    V  + Q  P HI+Y SCNPD+L  DL      + ++RL  FD FP+TRH E 
Sbjct: 295 RRGLGQTLVTQLAQLSPKHIIYSSCNPDTLRSDLDGFDG-YAVKRLQWFDMFPHTRHAEV 353

Query: 359 GVLLVRK 365
            VLL ++
Sbjct: 354 MVLLEKR 360


>gi|49484138|ref|YP_041362.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257426029|ref|ZP_05602451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428702|ref|ZP_05605097.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431312|ref|ZP_05607688.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257436934|ref|ZP_05612976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus M876]
 gi|282904528|ref|ZP_06312413.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906301|ref|ZP_06314153.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909217|ref|ZP_06317033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911522|ref|ZP_06319322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914695|ref|ZP_06322480.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919732|ref|ZP_06327464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus C427]
 gi|283958658|ref|ZP_06376104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293507772|ref|ZP_06667614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510789|ref|ZP_06669491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus M809]
 gi|293539329|ref|ZP_06672008.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428479|ref|ZP_06821106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297590050|ref|ZP_06948690.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|81650792|sp|Q6GFG0|Y1988_STAAR RecName: Full=Uncharacterized RNA methyltransferase SAR1988
 gi|49242267|emb|CAG40974.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271172|gb|EEV03329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274346|gb|EEV05858.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277961|gb|EEV08617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283723|gb|EEV13848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus M876]
 gi|282316370|gb|EFB46747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus C427]
 gi|282321409|gb|EFB51735.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324531|gb|EFB54843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326785|gb|EFB57082.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330498|gb|EFB60015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595084|gb|EFC00051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus C160]
 gi|283789698|gb|EFC28520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290919864|gb|EFD96933.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094835|gb|EFE25103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466420|gb|EFF08944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127461|gb|EFG57100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297577178|gb|EFH95892.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312437637|gb|ADQ76708.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315193426|gb|EFU23823.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 453

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPSTQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|257868017|ref|ZP_05647670.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC30]
 gi|257874347|ref|ZP_05654000.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC10]
 gi|257802100|gb|EEV31003.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC30]
 gi|257808511|gb|EEV37333.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC10]
          Length = 474

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           +++ Y G G   + LA     VL +E+   +V  A+ N   N V NV   +  + K   Q
Sbjct: 331 VVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQ 390

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
            +R                +   +FVDPPR GLD + +    A     I+YISCNP +L 
Sbjct: 391 WLR-------------EGIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLA 437

Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL++     +  + +   D FP T H+EC VLL R+
Sbjct: 438 RDLALFEEEGYVTKEVQPVDLFPQTTHVECVVLLERR 474


>gi|319427232|gb|ADV55306.1| RNA methyltransferase, TrmA family [Shewanella putrefaciens 200]
          Length = 450

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 26/186 (13%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q N  IN  M    ++W+  A       +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 279 GNFVQVNGQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGAEVIGVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298
              V  AR N  AN+++ +                    +   D+ +  +  +   + +D
Sbjct: 336 AEMVSQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356
           P R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + ++RL L D FP T H+
Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQRLGLIDMFPQTHHI 440

Query: 357 ECGVLL 362
           E   L 
Sbjct: 441 EAMALF 446


>gi|226323498|ref|ZP_03799016.1| hypothetical protein COPCOM_01273 [Coprococcus comes ATCC 27758]
 gi|225208182|gb|EEG90536.1| hypothetical protein COPCOM_01273 [Coprococcus comes ATCC 27758]
          Length = 471

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  +   +L        G+ G   + ++YCG G  SL LA+   +V  VEI   +
Sbjct: 289 SFYQVNP-VQTEVLYGTALEYAGLTGKETVWDVYCGIGTISLFLAQKAQKVYGVEIVPQA 347

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A++N   N + N +     ++E       E   +  K+      R   I VDPPR G
Sbjct: 348 IEDAKHNAEINEITNAEFFVGKAEEVLP----EYYADYAKEHPGEHARADVIVVDPPRKG 403

Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
            + + +  MVQ  P  I+Y+SC+  +L RD+  L    + I ++   D FP + H+E  V
Sbjct: 404 CERSVLDTMVQMEPERIVYVSCDSATLARDVKYLRENGYEIRKVKATDMFPMSVHVETVV 463

Query: 361 LLVR 364
           LL R
Sbjct: 464 LLSR 467


>gi|89097040|ref|ZP_01169931.1| YefA [Bacillus sp. NRRL B-14911]
 gi|89088420|gb|EAR67530.1| YefA [Bacillus sp. NRRL B-14911]
          Length = 458

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 15/148 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VEI   ++E A+ N A N + N +     +++    
Sbjct: 313 VIDAYCGIGTISLFLAQKAKKVFGVEIVPEAIEDAKRNAALNGITNAEFAVGEAEKVIPD 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E              +   + VDPPR G D+A +  + +     ++Y+SCNP +L R
Sbjct: 373 WYKE------------GNQADVLVVDPPRKGCDEALLQTILSMKPKKVVYVSCNPATLAR 420

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357
           DL IL    +  E +   D FP T H E
Sbjct: 421 DLRILEDGGYKTEEVQPVDMFPQTMHCE 448


>gi|325570600|ref|ZP_08146326.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156446|gb|EGC68626.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 465

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           +++ Y G G   + LA     VL +E+   +V  A+ N   N V NV   +  + K   Q
Sbjct: 322 VVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQ 381

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
            +R                +   +FVDPPR GLD + +    A     I+YISCNP +L 
Sbjct: 382 WLRE-------------GIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLA 428

Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           RDL++ +   +  + +   D FP T H+EC VLL R
Sbjct: 429 RDLALFAEEGYVTKEVQPVDLFPQTTHVECVVLLER 464


>gi|269123350|ref|YP_003305927.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis
           DSM 12112]
 gi|268314676|gb|ACZ01050.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis
           DSM 12112]
          Length = 473

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 16/156 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++ + G G  ++++++  ++V+ +EI   SV++A   I  ++ NN+K V     +  +
Sbjct: 311 NVIDAFSGTGTIAMIMSKKANKVIGLEIVPESVKSA---IKTSNENNIKNVEFLVGKVEE 367

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
            + R  E N +            I  DPPR G+D + +  V       ++YISC+P +L 
Sbjct: 368 TISRVLENNNI----------DYIVFDPPRKGIDKSILEKVNESGINKLVYISCDPTTLA 417

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           RD+ +L    + +E +  FD FP T H+E  VLL +
Sbjct: 418 RDIGVLKEYGYKLEFIKGFDMFPQTHHIETVVLLSK 453


>gi|254977015|ref|ZP_05273487.1| putative RNA methyltransferase [Clostridium difficile QCD-66c26]
 gi|255651934|ref|ZP_05398836.1| putative RNA methyltransferase [Clostridium difficile QCD-37x79]
 gi|306521684|ref|ZP_07408031.1| putative RNA methyltransferase [Clostridium difficile QCD-32g58]
          Length = 544

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    
Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPK 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M RE +   +            + VDPPR G D+  +  +V   P  I+Y+SCNP +L R
Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLAR 416

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364
           DL  L+  H  + +     D FP++ H+E   LL +
Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETVALLSK 451


>gi|328473948|gb|EGF44764.1| RNA methyltransferase [Listeria monocytogenes 220]
          Length = 458

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV         + + 
Sbjct: 314 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
            + E    +  +     +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 365 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 420

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 421 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 453


>gi|309389700|gb|ADO77580.1| (Uracil-5)-methyltransferase [Halanaerobium praevalens DSM 2228]
          Length = 389

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  +  +A   D++  +EI K +   A  N   N+V N K +          ++
Sbjct: 249 DLYCGAGTIAQSIAAGADQIYGIEIDKNAANQASENADLNNVKNTKYLA------GDVLK 302

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332
           +  E  +  D+         + +DPPR G++   +  +     P ILYISCNP SL  DL
Sbjct: 303 KINEIEKAADL---------LIIDPPRPGINPKALKKIAKIGAPEILYISCNPKSLAIDL 353

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364
             L    + +E+    D FP+T+H+E   LL +
Sbjct: 354 KELENYNYKLEKFKAVDMFPHTKHVEMISLLKK 386


>gi|291545409|emb|CBL18517.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus sp.
           SR1/5]
          Length = 390

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 20/191 (10%)

Query: 178 LIYRQIENSFTQPNAGINVHML---EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
           L +R   +SF Q N  +   +L       AA  G +  +++ YCG G   ++ + +   V
Sbjct: 204 LTFRISPSSFYQVNP-VQTEVLYGKAMEFAAMTGKE-RVIDAYCGTGTIGIIASGNARDV 261

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE+ + ++  AR N   N + NV+ V   +  F + M  E E            + + 
Sbjct: 262 IGVELNRDAIRDARMNARENKIRNVRFVPGDAGWFMEGMAAEGE------------KVEV 309

Query: 295 IFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           + +DPPRSG D   +  ++   P  I+Y+SCNP++L RDL+ L+   + ++++   D FP
Sbjct: 310 VLMDPPRSGSDRKFLHSLLTLSPEKIVYVSCNPETLARDLACLTKRDYLVKKMQPVDMFP 369

Query: 352 YTRHMECGVLL 362
            T  +E   LL
Sbjct: 370 LTDSVEVVCLL 380


>gi|253689752|ref|YP_003018942.1| RNA methyltransferase, TrmA family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259495631|sp|C6DDJ9|RUMA_PECCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|251756330|gb|ACT14406.1| RNA methyltransferase, TrmA family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 449

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 19/195 (9%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231
           VAG TL +      F Q N  +N  M+   LA      Q  +L+L+CG GNF+L LA+  
Sbjct: 262 VAGLTLAFS--PRDFIQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRA 319

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290
             V+ VE     VE  R N   N ++NV     +   + TQ     + F++         
Sbjct: 320 ASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWVAQGFDK--------- 370

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFD 348
               I +DP R+G       + +  P  ++Y+SCN  +L RD  + L+   T+  +A+ D
Sbjct: 371 ----ILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLVNVAMLD 426

Query: 349 QFPYTRHMECGVLLV 363
            FP+T H+E   L +
Sbjct: 427 MFPHTGHLESMALFL 441


>gi|313837106|gb|EFS74820.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL037PA2]
 gi|314927868|gb|EFS91699.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL044PA1]
 gi|328907328|gb|EGG27094.1| deoxyribonuclease/rho motif-related TRAM [Propionibacterium sp.
           P08]
          Length = 393

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 24/202 (11%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           DE +T       ++     F Q + G    + + V+   K  QGD  L+LYCG G F+ +
Sbjct: 211 DETMTAHVGQRRWKVGAGGFWQVHPGAAEALADAVVGGLKPHQGDEALDLYCGVGLFAGL 270

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA    RV  +E+++ +V  AR N+   H             FT A R ER   R+    
Sbjct: 271 LADRGVRVRGIEVSRQAVALARRNVPGGH-------------FT-AGRVERALPRM---- 312

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIER- 343
             S +   + +DPPR G   A V  + +  P  I +++C+P +L RDL +        R 
Sbjct: 313 --SAKANIVVLDPPRKGAGKAVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYAPRS 370

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP T H+E   +L  K
Sbjct: 371 IRAFDVFPMTHHVEAVAILEPK 392


>gi|226328919|ref|ZP_03804437.1| hypothetical protein PROPEN_02821 [Proteus penneri ATCC 35198]
 gi|225202105|gb|EEG84459.1| hypothetical protein PROPEN_02821 [Proteus penneri ATCC 35198]
          Length = 441

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 23/186 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  IN  M    +EW+  +    +  +L+L+CG GNF+L +A+    V+ +E    
Sbjct: 272 FIQVNDEINSQMVAQAIEWLDLSP---EDRVLDLFCGMGNFTLPIAKRVSEVVGIEGVPA 328

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            VE A+ N   N + N        S +F+     +  FN+             + +DP R
Sbjct: 329 LVEMAKKNAKLNQLGNAHFWHADLSADFSAMSWSKEGFNK-------------VLLDPAR 375

Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECG 359
           +G  +    +V+ +   I+Y+SCNP +L RD  I L + + +  L + D FP T H+E  
Sbjct: 376 AGALEVMSHIVKLSAEKIVYVSCNPTTLARDSKILLDSGYQLTGLKMLDMFPQTGHLESM 435

Query: 360 VLLVRK 365
               RK
Sbjct: 436 AQFSRK 441


>gi|325687169|gb|EGD29191.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK72]
          Length = 464

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+H   V  VE+   +VE ++ N A N + N   V   ++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYVCAPAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 429 DIKLYRELGYELKKVQPVDLFPQTHHVECVALLVK 463


>gi|251778308|ref|ZP_04821228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082623|gb|EES48513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 455

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  +L L++   +V  VEI + ++  A+ N   N+V+NV        EF   
Sbjct: 312 VFDAYCGTGTITLFLSQKAKKVYGVEIIESAIINAKENAKLNNVDNV--------EFFVG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLC 329
              E   N + D      +   + VDPPR G D      +G V+    ++Y+SC+P +L 
Sbjct: 364 KSEEVIPNLIND----GIKADIVVVDPPRKGCDVKLLEAIGEVKP-KKVVYVSCDPSTLA 418

Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL IL+   + +  +   D FP T H+E  V L++K
Sbjct: 419 RDLKILNEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455


>gi|190149586|ref|YP_001968111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249528|ref|ZP_07335735.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251846|ref|ZP_07533747.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307262906|ref|ZP_07544530.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914717|gb|ACE60969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651602|gb|EFL81751.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860538|gb|EFM92550.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306871811|gb|EFN03531.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 442

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q N  +N  M    LEW+ L+A    Q  +L+L+CG GNF+L +A+    V+ VE  +
Sbjct: 274 FIQVNGDLNEKMVDKALEWLDLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVE 329

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P V  A+ N   + + NV   + +  E               D    S  F  + +DP R
Sbjct: 330 PMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPAR 377

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           +G       +    P  I+Y+SCNP +L RD   ++   + +++ A+ D FP+T H+E  
Sbjct: 378 NGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESI 437

Query: 360 VLLVR 364
            L  +
Sbjct: 438 SLFTK 442


>gi|314971879|gb|EFT15977.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL037PA3]
          Length = 393

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 24/202 (11%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           DE +T       ++     F Q + G    + + V+   K  QGD  L+LYCG G F+ +
Sbjct: 211 DETMTAHVGQRRWKVGAGGFWQVHPGAAEALADAVVGGLKPHQGDEALDLYCGVGLFAGL 270

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA    RV  +E+++ +V  AR N+   H             FT A R ER   R+    
Sbjct: 271 LADRGVRVRGIEVSRQAVALARRNVPGGH-------------FT-AGRVERALPRM---- 312

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIER- 343
             S +   + +DPPR G   A V  + +  P  I +++C+P +L RDL +        R 
Sbjct: 313 --SAKANIVVLDPPRKGAGKAVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYAPRS 370

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP T H+E   +L  K
Sbjct: 371 IRAFDVFPMTHHVEAVAILEPK 392


>gi|256959863|ref|ZP_05564034.1| RNA methyltransferase [Enterococcus faecalis Merz96]
 gi|256950359|gb|EEU66991.1| RNA methyltransferase [Enterococcus faecalis Merz96]
          Length = 457

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLAR 419

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454


>gi|319776825|ref|YP_004136476.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma
           fermentans M64]
 gi|318037900|gb|ADV34099.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Mycoplasma
           fermentans M64]
          Length = 438

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 19/155 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++ Y G G  SL +A    +V  +EI K +V  A+ N   N++NN         EF +
Sbjct: 296 NVVDAYSGIGTISLKIAEKVKKVYGLEIVKEAVINAKQNAKLNNINNT--------EFYE 347

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329
                   + LK ID    +  TI +DPPR+G+    +  +++  P  I YISCNP +LC
Sbjct: 348 G-------DVLKTIDNIKEKIDTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLC 400

Query: 330 RDLSI--LSTTHTIERLALFDQFPYTRHMECGVLL 362
           RD+ +  LS  + +E L   D F  T H+E   +L
Sbjct: 401 RDIDLLTLSKKYKLEFLKPCDMFCQTHHVETVAIL 435


>gi|253576638|ref|ZP_04853966.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844052|gb|EES72072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 483

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 22/209 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
            N+T+I    D + E L     TL  R    +F Q N    V + E V AA  G+ G   
Sbjct: 283 GNRTEILWGADSIQESLGDLEFTLSPR----AFFQLNPLQTVKLYESVRAAA-GLTGKET 337

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA +   V  +E    +VE A+ N A N  +N +     ++E    
Sbjct: 338 VVDAYCGTGTIGLWLAPYAKEVRGIESIPEAVEDAKANAARNGRDNAQFYTGYAEEL--- 394

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           + R  +     D+         I  DPPR+GLD   +  +++  P   +Y+SCNP +L +
Sbjct: 395 LPRWVKSGFAPDV---------IVADPPRTGLDPRFLEAVLKTKPKRFVYVSCNPSTLAK 445

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMEC 358
           D  ++L   + +E +   D FP T H+EC
Sbjct: 446 DCKALLDGGYALEWVQPVDMFPQTSHVEC 474


>gi|238809600|dbj|BAH69390.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 441

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 19/155 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++ Y G G  SL +A    +V  +EI K +V  A+ N   N++NN         EF +
Sbjct: 299 NVVDAYSGIGTISLKIAEKVKKVYGLEIVKEAVINAKQNAKLNNINNT--------EFYE 350

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329
                   + LK ID    +  TI +DPPR+G+    +  +++  P  I YISCNP +LC
Sbjct: 351 G-------DVLKTIDNIKEKIDTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLC 403

Query: 330 RDLSI--LSTTHTIERLALFDQFPYTRHMECGVLL 362
           RD+ +  LS  + +E L   D F  T H+E   +L
Sbjct: 404 RDIDLLTLSKKYKLEFLKPCDMFCQTHHVETVAIL 438


>gi|1723813|sp|P55136|RUMA_PHOAS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|537618|gb|AAA62209.1| unknown [Vibrio sp.]
          Length = 220

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 15/181 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +NV M+E  +       Q  +L+L+CG GNFSL LAR    V+ VE     V 
Sbjct: 41  FIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVA 100

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N AAN ++N    + +  E    +   +E            +F  I +DP R+G  
Sbjct: 101 RATANAAANGLDNATFYQANLDEDVTKLVWAQE------------QFDKILLDPARAGAA 148

Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363
                +V   P  ++Y+SCNP +L RD   +L   + + RL + D FP+T H+E   L V
Sbjct: 149 GVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDMFPHTGHLESMTLFV 208

Query: 364 R 364
           +
Sbjct: 209 K 209


>gi|119358501|ref|YP_913145.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266]
 gi|119355850|gb|ABL66721.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 476

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 28/205 (13%)

Query: 168 DERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           +E   VAG   I  ++         NSF Q N+   V + + +L       GD + +L+C
Sbjct: 277 EEEFLVAGDGFITERLGKLDFNISANSFFQTNSAQTVLLYDEILRVAGLDIGDTVYDLFC 336

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN---HVNNVKIVRMSSKEFTQAMRR 275
           G G  +L L+ +  +V+ +E+++ SV  AR N A N   HV  +++     +    A++R
Sbjct: 337 GTGTIALYLSDYCRQVIGLEVSESSVADARKNAALNQREHVLFMQVDLNDHRAMVDALQR 396

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLS 333
                          + + I  DPPR+G+   A   MV+  P  I+Y+SCNP SL RD S
Sbjct: 397 HD-------------KPRVIVTDPPRAGMHPKALEVMVRIAPEKIVYVSCNPASLARDGS 443

Query: 334 -ILSTTHTIERLALFDQFPYTRHME 357
            I    + +  L   D FP+T H+E
Sbjct: 444 EICKGGYRLTSLQPVDMFPHTSHIE 468


>gi|293385052|ref|ZP_06630886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|293389323|ref|ZP_06633784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|312906041|ref|ZP_07765054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|312909387|ref|ZP_07768243.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
 gi|291077730|gb|EFE15094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|291081345|gb|EFE18308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|310628036|gb|EFQ11319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|311290411|gb|EFQ68967.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
          Length = 504

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 410

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 411 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLAR 466

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501


>gi|149180724|ref|ZP_01859227.1| YefA [Bacillus sp. SG-1]
 gi|148851514|gb|EDL65661.1| YefA [Bacillus sp. SG-1]
          Length = 457

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 17/158 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++ YCG G  SL LA+   +V  VEI   ++E A+ N   N   N         EF +
Sbjct: 313 NVIDAYCGIGTISLFLAQKAKKVYGVEIVPQAIEDAKKNAELNGFTNT--------EF-E 363

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLC 329
           A   E    R  D  I   +   + VDPPR G D+A +  + +  P  ++Y+SCNP +L 
Sbjct: 364 AGPAEVVIPRWYDEGI---KADVLVVDPPRKGCDEALLNTILEMKPRKVVYVSCNPATLA 420

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +L      T+E +   D FP T H+EC   LV K
Sbjct: 421 RDLQVLEDGGYRTLE-VQPVDMFPQTMHVECVAQLVLK 457


>gi|194335110|ref|YP_002016970.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM
           271]
 gi|194312928|gb|ACF47323.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM
           271]
          Length = 478

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 115/249 (46%), Gaps = 23/249 (9%)

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQI--QLIGRANKTKICLDRDYV---DERLT 172
           IVT  Y R L +A+R+    L + +  R+  I   +  R N      +++YV   D  L 
Sbjct: 235 IVTSWYDRELMEAYRD---HLLERMKGRRMTIVNNVTTRKNTVSTG-EKEYVVYGDGTLR 290

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHF 231
                L +R   NSF Q N      + E ++      Q D++ +LYCG G  +L LA   
Sbjct: 291 ERLGDLHFRISANSFFQTNTRQAEALYEGIMRMAGLKQDDVVYDLYCGTGTITLYLAERC 350

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            + + +E+ + S+  A  N  AN + N    ++  K+F   +    ++            
Sbjct: 351 RQAVGLEVVESSIIDAAENAGANGIENAAFYQVDLKDFHTLVPTLEQYGMP--------- 401

Query: 292 FKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFD 348
            + I  DPPR+G+   A   +++  P  I+Y+SCNP +L RD   I+   + +E +   D
Sbjct: 402 -RVIVTDPPRAGMHPKALETLLRLQPETIVYVSCNPANLARDGKEIVQQGYRLEEVQPVD 460

Query: 349 QFPYTRHME 357
            FP+T H+E
Sbjct: 461 MFPHTSHVE 469


>gi|315157726|gb|EFU01743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0312]
          Length = 504

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A  N   N++ N          FT  
Sbjct: 359 VVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENAT--------FTAG 410

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +     +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 411 LAEE----LLPKLVEKGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 466

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 467 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 501


>gi|255020470|ref|ZP_05292535.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970080|gb|EET27577.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus
           caldus ATCC 51756]
          Length = 440

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 14/182 (7%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q N  IN  ++   +A      G+ +++L+CG GNF+L +AR   R L VE     V
Sbjct: 270 GFIQVNPWINPVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARALGVEGDTRLV 329

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             AR+N   N +         + + TQ          L D+   +   + + +DPPRSG 
Sbjct: 330 AQARFNAELNGL--AARAHFIAADLTQTA--------LADLP-GAAGVRKMLIDPPRSGA 378

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHMECGVLL 362
            +   G+  A   ++Y+SCNPD+L RD + L       +E   + + FP+T H+E   L 
Sbjct: 379 IEILKGIGPALRRLVYVSCNPDTLARDSAYLVQQQGFRLEAAGIVNMFPHTAHVESVALF 438

Query: 363 VR 364
            R
Sbjct: 439 TR 440


>gi|332361995|gb|EGJ39797.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK49]
          Length = 466

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+   +V  VE+   +VE ++ N A N + N   V   ++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC VLL RK
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVVLLQRK 464


>gi|189424927|ref|YP_001952104.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ]
 gi|189421186|gb|ACD95584.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ]
          Length = 485

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 17/163 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +L+LYCG G  +L LA    +VL VE+ K +V  A+ N     +NN +  R  
Sbjct: 330 GLDGSQQVLDLYCGIGGIALTLAPVARQVLGVELNKEAVADAKRNA---RLNNARNCRFE 386

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323
           + +  + +          D+     RF  I ++PPR G D   +  V  +    I+Y+SC
Sbjct: 387 AGDVLELL---------DDLLEDELRFSCIVLNPPRKGCDREVLDKVAEFAPERIVYVSC 437

Query: 324 NPDSLCRDLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365
           +P +L RDL IL+T     E++   + FP T H+E   LL+RK
Sbjct: 438 SPQTLARDLDILATKGFHCEKVQPVEMFPQTPHVENVALLLRK 480


>gi|238917056|ref|YP_002930573.1| hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
 gi|238872416|gb|ACR72126.1| Hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
          Length = 389

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   +V ++   +V+ VE+   +V  A+ N + N++ NV  V   + +F   
Sbjct: 246 VIDAYCGIGTIGIVASKKAGKVIGVELNSEAVSDAKINASINNIKNVTFVNADAGDFLV- 304

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                E+ +    D+       + +DPPRSG     +  +++  P  I+YISC PD+  R
Sbjct: 305 -----EYAKNAKADV-------VIMDPPRSGSTPEFLNSLLKIKPDRIVYISCGPDTQAR 352

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +L    + +     FD FP+T H+E  +LL RK
Sbjct: 353 DIKVLIKGGYKVTACQPFDLFPHTEHVENVILLSRK 388


>gi|227889470|ref|ZP_04007275.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849948|gb|EEJ60034.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 450

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ KP+VE A  N   N + N + V   ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E              R   IFVDPPR GL    +   V+  P  I+YISCNP ++ R
Sbjct: 365 WAKE------------GLRTDVIFVDPPRKGLTLEFIDAAVETNPKKIVYISCNPATMVR 412

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           DL +     +  + +   D FP T H+E   +L
Sbjct: 413 DLQLFKEQGYDFDEIDPVDMFPQTPHVESVTVL 445


>gi|282892425|ref|ZP_06300775.1| hypothetical protein pah_c253o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497827|gb|EFB40188.1| hypothetical protein pah_c253o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 484

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 13/153 (8%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  S+ L++    V+ VEI   +V  AR N A N  +NV  +  +  E    + 
Sbjct: 339 DLYCGTGTLSICLSKFAKTVVGVEICPEAVLDARSNAAKNGCSNVHFLCGAVHEQLTKII 398

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP-HILYISCNPDSLCRDL 332
            E  F  L D+         + VDPPR+GLD  A   +++  P  ILY+SCNP +   ++
Sbjct: 399 EENLFP-LPDL---------VVVDPPRAGLDPHALQHLIKLSPKKILYVSCNPLTQVDNI 448

Query: 333 S-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           S ++S  + +E +   DQFP+T H+E   +L +
Sbjct: 449 SNLISQGYRLEAMQPVDQFPHTIHIENIAVLTK 481


>gi|42519575|ref|NP_965505.1| hypothetical protein LJ1698 [Lactobacillus johnsonii NCC 533]
 gi|51316712|sp|Q74I68|Y1698_LACJO RecName: Full=Uncharacterized RNA methyltransferase LJ_1698
 gi|41583864|gb|AAS09471.1| hypothetical protein LJ_1698 [Lactobacillus johnsonii NCC 533]
          Length = 450

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ +P+VE A  N   N + N + V   ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E              +   IFVDPPR GL    +   V+  P  I+YISCNP ++ R
Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVR 412

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL +     +  + +   D FP T H+E   +L R
Sbjct: 413 DLQLFKEQGYDFDEIDPVDMFPQTPHVEAVAVLER 447


>gi|310779073|ref|YP_003967406.1| 23S rRNA m(5)U-1939 methyltransferase [Ilyobacter polytropus DSM
           2926]
 gi|309748396|gb|ADO83058.1| 23S rRNA m(5)U-1939 methyltransferase [Ilyobacter polytropus DSM
           2926]
          Length = 453

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 159/372 (42%), Gaps = 37/372 (9%)

Query: 9   QYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRA-EFHIWHDGDDLYHIM 62
           +YE QL  K + +  ++    ++ N +I+     + P +YR +  E   + DG  +    
Sbjct: 89  KYESQLKYKKEMVEDVLKKIGKLENFEIYDTIGSTSPKYYRNKVIEPFAYKDGK-IISGF 147

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-------EPLLRAKLFQIDYLTSQSD 115
           F +++ E   +   M  S L N +  E+   +         E   R  L  +   T+  D
Sbjct: 148 FKKKSHEVFEVSENMLQSKLANRITKELKEILNKKRIPVYDEKKHRGILRHVMVRTNSFD 207

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICL-DRD---YVDER 170
           +A+V L+         ++    LRD     + +   I   NK T + L D D   Y DE 
Sbjct: 208 EAMVVLVVKGEPAKNLKKILYDLRD--RCPEVKAAYISVNNKRTNVALGDEDIYVYGDEV 265

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR 229
           L      + +     SF Q N      + E  ++    ++  ++++ Y G G  +++L+R
Sbjct: 266 LKEELFDIKFNISPKSFFQINLEQTKKLYETAISYFDDVKNKNIVDAYSGTGTIAMILSR 325

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V A+E+ K +   A+     N + N+  +    +   + + ++RE           
Sbjct: 326 WAKKVFAIEMVKSATLDAKKTSMENKIKNIDFINGKVEGKLEELLKKRE----------- 374

Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLAL 346
            +   I  DPPR G++++ +  V       I+YISCNP +  RD ++L+   + + ++  
Sbjct: 375 -KIDAIIFDPPRKGIEESVLHSVAKTGINEIVYISCNPSTFARDANVLNEIGYDLLKVQP 433

Query: 347 FDQFPYTRHMEC 358
            D FP T H+E 
Sbjct: 434 VDMFPQTSHIEV 445


>gi|212638138|ref|YP_002314658.1| methyltransferase [Anoxybacillus flavithermus WK1]
 gi|212559618|gb|ACJ32673.1| Methyltransferase [Anoxybacillus flavithermus WK1]
          Length = 456

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 17/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA++  +V  VE+   ++E A+ N   N + NV+   +   E    
Sbjct: 311 VIDAYCGIGTISLFLAKNAKKVYGVEVVPEAIEDAKRNAELNGMTNVEFA-VGEAEVVIP 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
              E+             +   I VDPPR G D++ +  + A     ++Y+SCNP +L R
Sbjct: 370 KWYEQ-----------GVKADCIVVDPPRKGCDESLLQTIIAMKPKRVVYVSCNPATLAR 418

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLL 362
           DL IL      T+E +   D FP+T H+EC V L
Sbjct: 419 DLRILEDGGYKTLE-VQPVDMFPHTVHVECVVKL 451


>gi|50556488|ref|XP_505652.1| YALI0F20196p [Yarrowia lipolytica]
 gi|49651522|emb|CAG78461.1| YALI0F20196p [Yarrowia lipolytica]
          Length = 566

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 18/150 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  ++  ++V  VEI+  SV+ AR N   N +NN   +   ++     
Sbjct: 380 LVDAYCGSGLFSITCSQAVEKVYGVEISDESVKFARKNAELNKINNAVFLTGKAE----- 434

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                  N  KD+D    +   + +DPPR G D+A +  +V   P  ++Y+SCN  +  R
Sbjct: 435 -------NIFKDLDCDPAQ-TCMIIDPPRKGTDEAFINQLVTFQPQRLVYVSCNVHTQAR 486

Query: 331 DLSIL---STTHTIERLALFDQFPYTRHME 357
           D++ L      + +E +  FD FP T+H+E
Sbjct: 487 DVAYLLKQCPEYKVESIRGFDFFPQTKHVE 516


>gi|289422275|ref|ZP_06424129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           anaerobius 653-L]
 gi|289157326|gb|EFD05937.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           anaerobius 653-L]
          Length = 454

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 16/162 (9%)

Query: 210 QGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +GD + ++YCG G+ SL LA+  + V  VEI + +++ A  N   N ++N++     ++E
Sbjct: 305 EGDRVFDVYCGIGSISLFLAQKAEFVYGVEIVEDAIKDAMINAKLNGMDNLEFFVGKAEE 364

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326
               + ++              R   + VDPPR G D+  +  +V+  P  ++Y+SCNP 
Sbjct: 365 VVPEIYKQ------------GKRANVVVVDPPRKGCDEKVLDTIVEMEPERVVYVSCNPS 412

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +L RDL  L    +  E++   D F ++ H+EC  L+ R  S
Sbjct: 413 TLARDLRYLEDRGYRCEKVQPVDLFAHSVHVECIALIQRVKS 454


>gi|213025876|ref|ZP_03340323.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 64

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 47/64 (73%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
           MA +R    LR KLFQIDYLT+ S+QA+V+L+YH+ LD+ WRE A  LRDAL A+   + 
Sbjct: 1   MAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYHKKLDEEWREAATALRDALRAQGLNVH 60

Query: 151 LIGR 154
           LIGR
Sbjct: 61  LIGR 64


>gi|328946582|gb|EGG40721.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1087]
          Length = 465

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+H   V  VE+   +VE ++ N A N + N   V   ++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYVCAPAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 429 DIKLYRELGYELKKVQPVDLFPQTHHVECVSLLVKR 464


>gi|282889691|ref|ZP_06298230.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500265|gb|EFB42545.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 449

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 33/263 (12%)

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
           Q+ +++V L+  +    + +  A ++  A    K  IQ I R  +  + L  D+     T
Sbjct: 205 QTSESLVILVTSQEKCTSLQALAQQIMQACPEVKGVIQNINR-KRDNVILGTDW----HT 259

Query: 173 VAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223
           +AG++ I   I         ++F Q N      + + VL+ A        L+ +CG G  
Sbjct: 260 LAGKSYIREMICDHHFHISPSAFFQVNPAQAESIYQHVLSLADLDKTKTFLDAFCGVGTM 319

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L+ A      + +E    ++E A  N   N ++N                 E +   LK
Sbjct: 320 TLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFY---------CDHAESKIQSLK 370

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSIL-STTHT 340
           DID+       +F++PPR G +++ +  ++   P  ILY+SC+P +L RDL IL    + 
Sbjct: 371 DIDV-------VFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLKILVQHGYQ 423

Query: 341 IERLALFDQFPYTRHMECGVLLV 363
           IE++  FD FP T H+E  V L 
Sbjct: 424 IEQVTPFDMFPQTAHVETVVKLT 446


>gi|238920414|ref|YP_002933929.1| 23S rRNA methyluridine methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|238869983|gb|ACR69694.1| 23S rRNA (uracil-5-)-methyltransferase RumB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 377

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 86/186 (46%), Gaps = 25/186 (13%)

Query: 185 NSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +         +WV A   G+  ++ +L+CG G F L  A     +  +EI+
Sbjct: 208 QSFFQTNPAVAQALYAQARDWVQAL--GVT-EMWDLFCGVGGFGLHCATPEMTLTGIEIS 264

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR + A   +  V    + S  F                D HS   + + V+PP
Sbjct: 265 AGAIACARRSAAQLGLTKVSFAALDSGAFA---------------DAHSAVPQLVLVNPP 309

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+  A    +   A P+ILY SCN  S+ +D+  L+  + IE++ LFD FP+T H E 
Sbjct: 310 RRGIGAALCDYMNRMAPPYILYSSCNAQSMVQDIERLAD-YRIEKVRLFDMFPHTAHYEV 368

Query: 359 GVLLVR 364
             LLVR
Sbjct: 369 LTLLVR 374


>gi|242051741|ref|XP_002455016.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]
 gi|241926991|gb|EES00136.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]
          Length = 558

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 34/215 (15%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           Y    +T   R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG G
Sbjct: 357 YGKPNITEMLRGLTFQISANSFFQTNTK-QADVLYKLIEDSAGLKGDGSEIVLDLFCGTG 415

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LAR    V   E+   ++  AR N   N ++N   V+    +  ++  +E     
Sbjct: 416 TIGLTLARRAKHVYGYEVVPEAIADARKNAKLNGIDNATFVQGDLNKINESFGKE----- 470

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338
               DI       I  DP R G+    +     V+A P I+Y+SCNP +  RDL  L   
Sbjct: 471 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 520

Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362
           H +E   L            D FP+T H+EC  LL
Sbjct: 521 HGVEEKDLRGFYDLKSVIPVDMFPHTPHIECVCLL 555


>gi|299820611|ref|ZP_07052501.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
 gi|299818106|gb|EFI85340.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
          Length = 460

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ GD  +++ YCG G+ SL LA++   V  VEI   ++  A+ N   N ++NV      
Sbjct: 310 GLTGDEIVIDAYCGIGSISLCLAKNAKHVYGVEIVPQAIIDAKANAQLNQLDNVTFETGK 369

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISC 323
           ++E      R               +   + VDPPR G D+  +  ++   P  ++Y+SC
Sbjct: 370 AEEVIPNWYRS------------GIKADVLVVDPPRKGCDEKLLETIIDMKPKKVVYVSC 417

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           NP +L RD+ IL+   +T + +   D FP T H+E   +L
Sbjct: 418 NPATLARDMQILTAGGYTAKTVQPVDMFPMTNHIEAVTVL 457


>gi|317501056|ref|ZP_07959262.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897443|gb|EFV19508.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 460

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 23/227 (10%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + ++++T++   +D+  E+L      L ++    SF QPN      + E 
Sbjct: 249 LHILNDSLSDVVKSDETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYET 304

Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V      I    + +L+ G G  S VLA    +V+ VEI + +VEAA+ N   N ++N +
Sbjct: 305 VREYIGDIHDLTVFDLFSGTGTISQVLAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCE 364

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318
            +                F  L DI     +   I +DPPR G+    +  +  Y    I
Sbjct: 365 FIAGDV------------FEVLDDI---KEKPDVIILDPPRDGIHPKALPKILDYGVDRI 409

Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +YISC   SL RDL ++    +T+E++   DQF  T H+E   L+ R
Sbjct: 410 VYISCKMTSLARDLELIQQRGYTVEKMTAVDQFCETVHVETVCLMSR 456


>gi|116873139|ref|YP_849920.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742017|emb|CAK21141.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 458

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
            + E    +  +     +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 366 GKAEDVLPKWVN---DGFRPDAVIVDPPRSGCDQGLIKSLLEVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 422 RDLALLAKKYRIRYMQPVDMFPQTAHVETVVLL 454


>gi|266624563|ref|ZP_06117498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
 gi|288863579|gb|EFC95877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
          Length = 463

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 28/256 (10%)

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           +D +T+  ++  +     RLL         R+   LH     +    + +KT I   +DY
Sbjct: 218 VDLVTTSQEEPDLMPFAERLLSLPLNG---RIVGILHTWNDSLSDAVKNDKTDILYGQDY 274

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
             E L      L +R    SF Q N+ +   +L     +  G   D++  +LY G G  +
Sbjct: 275 FYEELL----GLKFRISPFSFFQTNS-LGAEVLYEKARSYVGDTKDMVVFDLYSGTGTIA 329

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
            ++A    +V+ VEI + +VEAA+ N   N + N         EF          + LK 
Sbjct: 330 QMIAPVAKKVVGVEIVEEAVEAAKENAKMNGLENC--------EFIAG-------DVLKV 374

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTI 341
           ID    +   I +DPPR G+    +G +  Y    I+YISC P SL RDL++     + +
Sbjct: 375 IDEIEEKPDLIILDPPRDGIHPKALGKIIDYGVNRIVYISCKPTSLVRDLAVFQERGYRV 434

Query: 342 ERLALFDQFPYTRHME 357
           E++   D FP T ++E
Sbjct: 435 EKVCAVDMFPSTGNVE 450


>gi|160937669|ref|ZP_02085029.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439314|gb|EDP17066.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC
           BAA-613]
          Length = 459

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 17/188 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  +    L        G+ G+  + +LYCG G  SL LA+   +V  VEI   +
Sbjct: 284 SFYQVNP-VQTERLYGTALEYAGLTGNEIVWDLYCGIGTISLFLAQKAQKVYGVEIVSQA 342

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++ AR N   N ++N         EF      E    + +   +H+     I VDPPR G
Sbjct: 343 IKDARRNAEINGIHNA--------EFFVGKAEEVLPEQFEKKHVHA---DVIVVDPPRKG 391

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGV 360
            D   +  + +  P  ++Y+SC+  +L RDL  L+   + +ER    D FP T H+E  V
Sbjct: 392 CDAVCLDTILKMRPERVVYVSCDSATLARDLRYLADGGYVVERGKCCDMFPGTVHVETVV 451

Query: 361 LLVRKPSG 368
            L RK +G
Sbjct: 452 ELSRKTNG 459


>gi|257080993|ref|ZP_05575354.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
 gi|256989023|gb|EEU76325.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
          Length = 457

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   ++  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 312 VVDAYCGIGTIGLTLAQDAKQIYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454


>gi|197302048|ref|ZP_03167109.1| hypothetical protein RUMLAC_00776 [Ruminococcus lactaris ATCC
           29176]
 gi|197298857|gb|EDY33396.1| hypothetical protein RUMLAC_00776 [Ruminococcus lactaris ATCC
           29176]
          Length = 559

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 23/228 (10%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + ++++T+I   +D+  E+L      L ++    SF QPN+     + E 
Sbjct: 246 LHILNDSLSDVVKSDETRILYGQDFFYEKLL----GLQFKITPFSFFQPNSRGAEVLYET 301

Query: 202 VLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V      I+   + +L+ G G    VLA    +V+ VEI + +VEAA+ N   N ++N K
Sbjct: 302 VREYIGDIENKTVFDLFSGTGTIGQVLAPVAKKVIGVEIIEEAVEAAKENALRNGLSNCK 361

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318
            +                F  L +I+    +   I +DPPR G+    +  +  Y    I
Sbjct: 362 FIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILEYGVDRI 406

Query: 319 LYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +YISC   SL RDL ++    + +E++   DQF  T H+E  VLL  K
Sbjct: 407 VYISCKMTSLARDLEMMQMAGYRVEKMTAVDQFCETVHVESIVLLSHK 454


>gi|331084332|ref|ZP_08333436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330401596|gb|EGG81177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 472

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 31/232 (13%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + R+++T+I   +DY  E +      L ++    SF QPN+    +  E 
Sbjct: 254 LHIINNSLSDVVRSDETRILYGQDYFYEEIL----GLKFKITPFSFFQPNS----YGAEV 305

Query: 202 VLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +    +   GD     + +LY G G  S ++A     V+ VEI + +V+AA  N   N +
Sbjct: 306 LYKTAREYIGDTKEMTVFDLYSGTGTISQIMASVAKEVIGVEIVEEAVKAAGENAHLNGI 365

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            N + +     +    ++ + +F               I +DPPR G+    +  +  Y 
Sbjct: 366 ENCRFIAGDVLKVLDDIQEKPDF---------------IILDPPRDGIHPKALPKIIDYG 410

Query: 317 --HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              ++YISC P SL RDL + L   + +E++   DQF  T H+E   LL ++
Sbjct: 411 VDKLVYISCKPTSLARDLEMFLGRGYQVEKVCCVDQFCQTVHVETVCLLSKR 462


>gi|330997901|ref|ZP_08321735.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569505|gb|EGG51275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella
           xylaniphila YIT 11841]
          Length = 491

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 24/207 (11%)

Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGN 220
           +T  G   IY Q+EN        SF Q N     + L  V     G+ G  L  +LY G 
Sbjct: 296 ITFRGNDHIYLQMENLRFKVGPKSFYQTNTD-QAYELYKVARDFAGLTGTELVYDLYTGT 354

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +  +A    +V+ +E    ++E A+ N   N + N        K+        +EF 
Sbjct: 355 GTIANFVAGKARKVIGIEYVPEAIEDAKINSQINGIGNTLFFAGDMKDILN-----KEF- 408

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT 338
               I  H  +   I  DPPR+G+  D    ++ A PH I+Y+SCNP +  RDL++L + 
Sbjct: 409 ----IAAHG-QPDVIITDPPRAGMHKDVIETILFAAPHRIVYVSCNPATQARDLALLDSQ 463

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + I  +   D FP+T+H+E  V+L R+
Sbjct: 464 YKIMGVRPVDMFPHTQHVENVVMLERR 490


>gi|318607054|emb|CBY28552.1| 23s rRNA (Uracil-5-)-methyltransferase RumA [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 425

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 25/200 (12%)

Query: 180 YRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
           Y QIE          F Q N  +N  M+   +A    +Q D  +L+L+CG GNF+L LA+
Sbjct: 236 YYQIEGLRLAFHPRDFIQVNDTVNQQMVAQAIAWLD-VQPDERVLDLFCGMGNFTLPLAK 294

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     V   +YN   N + NV         F + +  E + +R       +
Sbjct: 295 LAREVVGVEGVAALVANGQYNALNNALPNVSF-------FHENL--ESDISRQP---WAT 342

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALF 347
             F  + +DP R+G       +V+  P  ++Y+SCNP +L RD  + L+  + + ++ + 
Sbjct: 343 QGFDKVLLDPARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRML 402

Query: 348 DQFPYTRHMECGVLLVRKPS 367
           D FP+T H+E   L +++P 
Sbjct: 403 DMFPHTGHLESMALFMQEPG 422


>gi|296331894|ref|ZP_06874359.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673506|ref|YP_003865178.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296150972|gb|EFG91856.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411750|gb|ADM36869.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 466

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   + +A     V  +++ K S++ A+ N   + + N   V  +++ +   
Sbjct: 321 VVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMTNATYVTGTAEHWLPK 380

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
             +E             +R   + VDPPR+G D   +  +++  P   +Y+SCNP +L +
Sbjct: 381 WTKE------------GFRPDVVIVDPPRTGCDSTFLDTIIKVKPKRFVYVSCNPSTLAK 428

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + ++ +   D FP T H+E    LV KPS
Sbjct: 429 DLQALSKDYRVDYIQPVDMFPQTAHVEAVAKLVLKPS 465


>gi|222100448|ref|YP_002535016.1| RNA methyltransferase, TrmA family [Thermotoga neapolitana DSM
           4359]
 gi|221572838|gb|ACM23650.1| RNA methyltransferase, TrmA family [Thermotoga neapolitana DSM
           4359]
          Length = 439

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 93/185 (50%), Gaps = 21/185 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            +F Q N  +   +++ V      +QG+  +L+LY G G FS+  +    RV+AVE ++ 
Sbjct: 268 TAFFQSNYSVTSKLIDHVYRELD-LQGNEVVLDLYAGIGTFSMRTSYSSARVIAVESSRV 326

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V+A + N   N   N++ +     +F ++               +  R   + +DPPRS
Sbjct: 327 AVKAGKANANVNGRRNIEYIESDVLDFLKS---------------YQGRADKVILDPPRS 371

Query: 303 GLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           G   D    +++  P  ++Y+SC P +L RD+  L +  +++ R+  FD FP T H+E  
Sbjct: 372 GAGLDVMKEILRLSPERVVYVSCEPSTLVRDVQFLQNEGYSVVRVKPFDMFPQTYHVETV 431

Query: 360 VLLVR 364
           V LV+
Sbjct: 432 VTLVK 436


>gi|325295665|ref|YP_004282179.1| RNA methyltransferase, TrmA family [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066113|gb|ADY74120.1| RNA methyltransferase, TrmA family [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 432

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 29/212 (13%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQ 210
           K+C   D   ER+   GR   Y  +         +SF Q N     ++++ V  A    Q
Sbjct: 228 KVC--SDGYPERIKFFGRDFTYETVGKFKFRVSADSFFQVNRFQVFNLIDKVSKAAMEHQ 285

Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L  +LYCG G  ++ + R+  R   VE    ++  A YN     +N ++ V    +E 
Sbjct: 286 YNLAGDLYCGVGTLTIPVGRYVHRAFGVEANFSAISDALYN---KDINGLRSVNFYCRET 342

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPD 326
            + +          DI + ++    + VDPPRSGL    V  +   P    I+Y+SCNP 
Sbjct: 343 EEGL----------DI-VKNHNPDFVVVDPPRSGLSQRVVRELANLPRLKKIVYVSCNPS 391

Query: 327 SLCRDLSILSTTH-TIERLALFDQFPYTRHME 357
           +L RD+++       +ER  L D FP T H+E
Sbjct: 392 TLARDIALFHQYGINMERAKLIDMFPQTYHVE 423


>gi|123441098|ref|YP_001005087.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|226725400|sp|A1JJR0|RUMA_YERE8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122088059|emb|CAL10847.1| 23s rRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|330859216|emb|CBX69567.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia
           enterocolitica W22703]
          Length = 443

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 31/203 (15%)

Query: 180 YRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
           Y QIE          F Q N  +N  M+   +A    +Q D  +L+L+CG GNF+L LA+
Sbjct: 254 YYQIEGLRLAFHPRDFIQVNDTVNQQMVAQAIAWLD-VQPDERVLDLFCGMGNFTLPLAK 312

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     V   +YN   N + NV                    N   DI    
Sbjct: 313 LAREVVGVEGVAALVANGQYNALNNALPNVSFFHE---------------NLESDISRQP 357

Query: 290 YR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERL 344
           +    F  + +DP R+G       +V+  P  ++Y+SCNP +L RD  + L+  + + ++
Sbjct: 358 WATQGFDKVLLDPARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQV 417

Query: 345 ALFDQFPYTRHMECGVLLVRKPS 367
            + D FP+T H+E   L +++P 
Sbjct: 418 RMLDMFPHTGHLESMALFMQEPG 440


>gi|329667821|gb|AEB93769.1| hypothetical protein LJP_1447c [Lactobacillus johnsonii DPC 6026]
          Length = 450

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ +P+VE A  N   N + N + V   ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E              +   IFVDPPR GL    +   V+  P  I+YISCNP ++ R
Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVR 412

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL +     +  + +   D FP T H+E   +L R
Sbjct: 413 DLQLFKEQGYDFDEIDPVDMFPQTPHVESVTVLER 447


>gi|253729672|ref|ZP_04863837.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253726613|gb|EES95342.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 453

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|160943841|ref|ZP_02091072.1| hypothetical protein FAEPRAM212_01340 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445015|gb|EDP22018.1| hypothetical protein FAEPRAM212_01340 [Faecalibacterium prausnitzii
           M21/2]
          Length = 394

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 95/208 (45%), Gaps = 26/208 (12%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
           T+ G+T  Y     SF Q N      +    + A K + G   +L+ YCG G   L  A 
Sbjct: 200 TLCGKT--YAISPRSFYQVNPAQTAVLYGLAVEAAK-LTGKEVVLDAYCGIGTIGLTAAD 256

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           H  +V+ VE+ + +V+ A  N  A H N VK  R  + + T+ +R         D+    
Sbjct: 257 HAKQVVGVELNRDAVQDAIGN--ARH-NGVKNARFFAADATRWIREAAAAGEKADV---- 309

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLAL 346
                IF+DPPR G     +  V   A   ++Y+SCNP +L RDL+ L+   +  E    
Sbjct: 310 -----IFMDPPREGSTPEFLASVARMAPKRVVYVSCNPVTLARDLATLTKLGYKAEGFTP 364

Query: 347 FDQFPYTRHMECGVLLV------RKPSG 368
            D FP+T H+E    L       +KPSG
Sbjct: 365 VDMFPHTEHIETVCALSKLEIHRKKPSG 392


>gi|21283567|ref|NP_646655.1| hypothetical protein MW1838 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486716|ref|YP_043937.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208925|ref|ZP_06925329.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300913018|ref|ZP_07130456.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|50401765|sp|Q8NVT4|Y1838_STAAW RecName: Full=Uncharacterized RNA methyltransferase MW1838
 gi|81649033|sp|Q6G836|Y1819_STAAS RecName: Full=Uncharacterized RNA methyltransferase SAS1819
 gi|21205008|dbj|BAB95703.1| MW1838 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245159|emb|CAG43625.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296886415|gb|EFH25344.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300885796|gb|EFK81003.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|329731488|gb|EGG67851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 453

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|323439838|gb|EGA97554.1| RNA methyltransferase [Staphylococcus aureus O11]
 gi|323443001|gb|EGB00622.1| RNA methyltransferase [Staphylococcus aureus O46]
          Length = 453

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|282917244|ref|ZP_06324999.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus D139]
 gi|283771047|ref|ZP_06343938.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus H19]
 gi|282318871|gb|EFB49226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus D139]
 gi|283459641|gb|EFC06732.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 453

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|258422974|ref|ZP_05685873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9635]
 gi|257846761|gb|EEV70776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9635]
          Length = 453

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|261822786|ref|YP_003260892.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261606799|gb|ACX89285.1| RNA methyltransferase, TrmA family [Pectobacterium wasabiae WPP163]
          Length = 449

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 19/195 (9%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231
           VAG TL +      F Q N  +N  M+   LA      Q  +L+L+CG GNF+L LA+  
Sbjct: 262 VAGLTLAFS--PRDFIQVNDAVNQQMVAQALAWLDVQPQDKILDLFCGMGNFTLPLAQRA 319

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290
             ++ VE     VE  R N   N ++NV     +   + TQ     + F++         
Sbjct: 320 ASIVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWAAQGFDK--------- 370

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFD 348
               I +DP R+G       + +  P  ++Y+SCN  +L RD  + L+  + +  +A+ D
Sbjct: 371 ----ILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLD 426

Query: 349 QFPYTRHMECGVLLV 363
            FP+T H+E   L +
Sbjct: 427 MFPHTGHLESMALFL 441


>gi|296111231|ref|YP_003621613.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295832763|gb|ADG40644.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 458

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 29/185 (15%)

Query: 185 NSFTQPNAGINVHMLE--WVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           NSF Q    +N  M E  + LAA K        +++ Y G G   + +A    +VL VE+
Sbjct: 284 NSFYQ----VNPQMTEKLYDLAAQKANLKTTDVVIDAYSGIGTIGITVANQVKQVLGVEV 339

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +V  A+ NI AN + N   +   + E         +F R +D  +   +   +FVDP
Sbjct: 340 VPGAVADAQLNIKANKIKNATYILADAPE---------QFKRWQDAGL---KPDVVFVDP 387

Query: 300 PRSGLDD----ATVGMVQAYPHILYISCNPDSLCRD-LSILSTTHTIERLAL-FDQFPYT 353
           PR GL      ATV M      ++YISCNP +L RD + IL   + +    L  DQFP T
Sbjct: 388 PRRGLTSQLIQATVDM--GPDRLVYISCNPVTLARDTVEILEKGYHLSGTILPVDQFPQT 445

Query: 354 RHMEC 358
            H+E 
Sbjct: 446 SHIES 450


>gi|254173067|ref|ZP_04879741.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
 gi|214033223|gb|EEB74051.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
          Length = 418

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 27/184 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           NSF Q N+    + LE +L A +       +L+LY G G F + LA+   RV  +EI   
Sbjct: 258 NSFFQTNS----YALELLLRAVENFTDGERVLDLYSGVGTFGVYLAKRGFRVEGIEINPF 313

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +VE A  N   N VN                  +    R ++  I  Y   T+ VDPPR 
Sbjct: 314 AVEMANRNAKLNGVNA-----------------QFRVGRAEETPIGDY--DTVIVDPPRK 354

Query: 303 GLDDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
           GL +A   +V++    ++Y+SCNP +   D  + L   + +E   L D FP+T H+E  V
Sbjct: 355 GLKEAGELLVKSGVERVVYVSCNPKAFKLDYENHLKKAYRVEEAILVDMFPHTSHVEAVV 414

Query: 361 LLVR 364
           LL R
Sbjct: 415 LLSR 418


>gi|195927327|pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
           (Uracil-54, C5)-Methyltransferase In Complex With
           S-Adenosyl-L- Homocysteine
          Length = 425

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 25/181 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N+   V+++  V    +G +  +L++Y G G F + LA+    V   +  + ++
Sbjct: 268 NSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAI 325

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E AR N+  N+V+                    EF    D ++    F T+ VDPPR+GL
Sbjct: 326 EMARRNVEINNVDA-------------------EFEVASDREVSVKGFDTVIVDPPRAGL 366

Query: 305 DDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
               V  + +  P  I+Y+SCNP++  RD+ +L   + I+ +   D FP+T H+E    L
Sbjct: 367 HPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIVALDMFPHTPHVELVAKL 424

Query: 363 V 363
           V
Sbjct: 425 V 425


>gi|332292761|ref|YP_004431370.1| RNA methyltransferase, TrmA family [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170847|gb|AEE20102.1| RNA methyltransferase, TrmA family [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 470

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 24/215 (11%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +  +GR  I+ ++E         SF Q N+    + L  +     G+ G+ L
Sbjct: 268 DTIYDQEVICFSGRDHIFEEMEGLKFKINAKSFYQTNSK-QAYELYKITRDFAGLSGNEL 326

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             +LY G G  +  +A+   +V+ VE    ++EAA+ N   N + N +        F   
Sbjct: 327 VYDLYTGTGTIAQFVAKKARKVIGVEAVPDAIEAAKENAKLNGIENTEF-------FVGD 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCR 330
           M++   FN    I+ H      I  DPPR G+  D    ++   P  ++Y+SCN  +  R
Sbjct: 380 MKKV--FN-TDFINTHGVP-DIIITDPPRDGMHADVVQQIINISPEKVVYVSCNSATQAR 435

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL++L  T+ + ++   D FP T H+E  VLL ++
Sbjct: 436 DLALLDDTYKVTKVQPVDMFPQTHHVENVVLLEKR 470


>gi|332160480|ref|YP_004297057.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664710|gb|ADZ41354.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 425

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 25/200 (12%)

Query: 180 YRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
           Y QIE          F Q N  +N  M+   +A    +Q D  +L+L+CG GNF+L LA+
Sbjct: 236 YYQIEGLRLAFHPRDFIQVNDTVNQQMVAQAIAWLD-VQPDERVLDLFCGMGNFTLPLAK 294

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     V   +YN   N + NV         F + +  E + +R       +
Sbjct: 295 LAREVVGVEGVAALVANGQYNALNNALPNVSF-------FHENL--ESDISRQP---WAT 342

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALF 347
             F  + +DP R+G       +V+  P  ++Y+SCNP +L RD  + L+  + + ++ + 
Sbjct: 343 QGFDKVLLDPARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRML 402

Query: 348 DQFPYTRHMECGVLLVRKPS 367
           D FP+T H+E   L +++P 
Sbjct: 403 DMFPHTGHLESMALFMQEPG 422


>gi|50122491|ref|YP_051658.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|115298496|sp|Q6D178|RUMA_ERWCT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|49613017|emb|CAG76468.1| 23S rRNA (uracil-5-)-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 450

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 19/195 (9%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
           VAG TL +      F Q N  +N  M+   LA       D +L+L+CG GNF+L LA+  
Sbjct: 262 VAGLTLAFS--PRDFIQVNDAVNQQMVAQALAWLDVQSQDRILDLFCGMGNFTLPLAQRA 319

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290
             V+ VE     VE  R N   N ++NV     +   + TQ     + F++         
Sbjct: 320 ASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWAAQGFDK--------- 370

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFD 348
               I +DP R+G       + +  P  ++Y+SCN  +L RD  + L+  + +  +A+ D
Sbjct: 371 ----ILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLD 426

Query: 349 QFPYTRHMECGVLLV 363
            FP+T H+E   L +
Sbjct: 427 MFPHTGHLESMALFL 441


>gi|298695236|gb|ADI98458.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
          Length = 453

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|158338369|ref|YP_001519546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acaryochloris marina
           MBIC11017]
 gi|158308610|gb|ABW30227.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acaryochloris marina
           MBIC11017]
          Length = 478

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 19/159 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++LYCG G  +L LA+    ++ +E+   +V+ A+ N   N ++NV     ++K    A
Sbjct: 335 VVDLYCGIGTLTLPLAQRVKEIIGIELQAAAVDQAQTNATLNQISNVTFAAGTAK----A 390

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             RE  F  + D+         + +DPPR G   + +  + A     I+Y+SC+  +L R
Sbjct: 391 CLRELPF--VPDL---------VLLDPPRKGCHQSVIEQLLALKPAQIVYVSCHSATLAR 439

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL++L  S  + + R+   D FP T H+EC   L R+ S
Sbjct: 440 DLNLLCQSGQYDLTRVQPVDFFPQTSHVECVAFLNRRAS 478


>gi|226950817|ref|YP_002805908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A2 str. Kyoto]
 gi|226841903|gb|ACO84569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A2 str. Kyoto]
          Length = 461

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E    
Sbjct: 316 VFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV--- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    + D+     + + + VDPPR G +   +  + A     I+Y+SC+  +L R
Sbjct: 373 ---------IPDLIDKGIKAEVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDSGTLAR 423

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL IL+   +  + +   D FP T H+E  VL+ R
Sbjct: 424 DLGILNGLGYETKEVQPVDMFPQTSHVETIVLIQR 458


>gi|225376677|ref|ZP_03753898.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM
           16841]
 gi|225211560|gb|EEG93914.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM
           16841]
          Length = 498

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 18/153 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + +L+    +V+ VEI + +VEAA+ N   N ++N + +          
Sbjct: 356 VFDLYSGTGTIAQMLSPVAKKVIGVEIIEEAVEAAKENAQLNGLHNCEFIAG-------- 407

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                  + LK ID    +   I +DPPR G++   +  +  Y  P ++YISC P SL R
Sbjct: 408 -------DVLKVIDSIEEKPDYIVLDPPRDGINPKALEKIIRYNVPQMVYISCKPTSLAR 460

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           DL +L    + ++++   D FP T H+E  VL+
Sbjct: 461 DLEVLQARGYEVKKVCCVDMFPSTFHVESVVLM 493


>gi|237809485|ref|YP_002893925.1| 23S rRNA 5-methyluridine methyltransferase [Tolumonas auensis DSM
           9187]
 gi|237501746|gb|ACQ94339.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187]
          Length = 440

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 16/185 (8%)

Query: 185 NSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             F Q N  +N  ++ +V   LA T     ++L+L+CG GNF+L LAR    V  +E   
Sbjct: 268 GDFLQVNPQVNQRLVNYVREWLAPTA--TDNVLDLFCGIGNFTLPLAREAASVTGIEGVD 325

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             V+ A +N   N + N    R    +  +            +       +  + +DP R
Sbjct: 326 EMVQRATHNAEQNQLVNTGFHRADLTKMAE----------YANAGWQQQCYDLVLLDPGR 375

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           +G +     + ++    I+Y+SCNP +  RD ++L   +T+++  L D FP+T H+E   
Sbjct: 376 TGAEAVMPWLAKSGARRIVYVSCNPVTAARDCALLQPGYTLKQWGLLDMFPHTGHVESLF 435

Query: 361 LLVRK 365
           L  RK
Sbjct: 436 LFERK 440


>gi|166030479|ref|ZP_02233308.1| hypothetical protein DORFOR_00140 [Dorea formicigenerans ATCC
           27755]
 gi|166029731|gb|EDR48488.1| hypothetical protein DORFOR_00140 [Dorea formicigenerans ATCC
           27755]
          Length = 467

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 154/351 (43%), Gaps = 53/351 (15%)

Query: 39  EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPG---SLLIN---ALMIEMMA 92
           EP HYR +A+F I  D             KE   I  F  G   S++ N   AL + +  
Sbjct: 128 EPFHYRNKAQFPIGTD-------------KEGHIITGFYAGRTHSIIPNTDCALGVAVNQ 174

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE-----CAIRLRDAL-HARK 146
            I LE +L     + +++++  ++    L+ H L+   ++      C +   + L HA K
Sbjct: 175 KI-LEIILH--FMENNHISAYDEEKHKGLVRHVLIRYGFKTDEIMVCLVINGEKLPHAEK 231

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVA-------GRTLIYRQIEN--------SFTQPN 191
              +L   +  T I +  +     + +        G+T I   I N        SF Q N
Sbjct: 232 LVDKLCEISGMTSITISVNKAKTNVIMGKEIKLLWGQTYITDYIGNVKYQISPLSFYQVN 291

Query: 192 AGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
             +    L  +      + G+  + +LYCG G  SL LA++  +V  VEI   +++ AR 
Sbjct: 292 P-VQTEKLYGLALDYADLNGNETVWDLYCGIGTISLFLAQNAKQVYGVEIVPQAIDDARN 350

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N + N +     ++E      RE + +   +    +     I VDPPR G +++ +
Sbjct: 351 NAKINDITNAEFYVGKAEEVLPGYYREYQESHGGE----TAHADVIVVDPPRKGCEESLL 406

Query: 310 -GMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
             +V   P  ++Y+SC+  +L RD+  L  + + ++++   DQFP T H+E
Sbjct: 407 QTIVDMQPEKVVYVSCDSATLARDVKFLRESGYELKKITPVDQFPNTVHVE 457


>gi|298373691|ref|ZP_06983680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274743|gb|EFI16295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 477

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 15/156 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAM 273
           +LY G G  +  +AR   +V+ +E    ++E A+ N A N + N +      K+  +Q+ 
Sbjct: 331 DLYTGTGTIANFVARKAKKVIGIEYVPEAIEDAKENSAINGIVNTEFFAGDMKDVLSQSF 390

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRD 331
                      +D H  +   I  DPPR+G+ +  +   ++ + P I+Y+SCNP +  RD
Sbjct: 391 -----------VDYHG-QPDVIITDPPRAGMHEDVIKTILLASAPRIVYVSCNPATQARD 438

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           L +L   + I  +   D FP+T H+E  VLL ++ +
Sbjct: 439 LQMLDADYKIVAVQPVDMFPHTHHVENVVLLEKRKT 474


>gi|297587111|ref|ZP_06945756.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC
           53516]
 gi|297575092|gb|EFH93811.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC
           53516]
          Length = 404

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G  ++ +  + +  + VE+ K +V+ A  N   N++ +++ +   S+     
Sbjct: 264 ILDLYCGIGTTTMYIG-NGNNTIGVEVVKDAVKDANENKKLNNLESIQFIEEKSENVVGK 322

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           + +E               F  I VDPPR G+D+  V  +       ++YISC+P +L R
Sbjct: 323 LTQEH--------------FDIILVDPPRKGMDEKVVDAIIKSTAKKLVYISCDPATLAR 368

Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L+     +  + L D F  T H+E  VL+ RK
Sbjct: 369 DLKMLTENGFAVIDVKLVDMFAKTMHVESVVLMSRK 404


>gi|291556144|emb|CBL33261.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
           V10Sc8a]
          Length = 474

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
           +R   +SF Q N      + ++ + A K  + D LL+ Y G G   ++ + +  +V  +E
Sbjct: 204 FRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIGTIGIIASDYVKQVQGIE 263

Query: 239 IAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
               +V  A  N   N +  N+   R  + EF +   +         +  H   +  + +
Sbjct: 264 YNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKAK---------LGTH---YDAVIL 311

Query: 298 DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355
           DP R+G D   +  +V+  P  I+YISCNP +  RDL  L+  +T+  +  FD FP+TRH
Sbjct: 312 DPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKKYTVTDIQPFDMFPHTRH 371

Query: 356 MECGVLLVR 364
           +E  VLL +
Sbjct: 372 VETVVLLSK 380


>gi|170720402|ref|YP_001748090.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida
           W619]
 gi|169758405|gb|ACA71721.1| RNA methyltransferase, TrmA family [Pseudomonas putida W619]
          Length = 452

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 92/200 (46%), Gaps = 22/200 (11%)

Query: 172 TVAGRTLIYRQIE-----NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFS 224
           T  G TL   Q+E       F Q NA +N  M+E  LA     Q D  +L+L+CG GNF+
Sbjct: 263 TKLGFTLQPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFA 321

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LAR    V+AVE  +  V+      A    NNV   R    + +Q          L  
Sbjct: 322 LPLARQAREVVAVEGVQAMVD---RAAANARNNNVHNARFFQADLSQP---------LAG 369

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIE 342
               +  F  + +DPPR G  +   G+ +     ++Y+SCNP +L RD  +L    + ++
Sbjct: 370 AGWAAEGFSAVLLDPPRDGAFEVVQGIARLKAKRLVYVSCNPATLARDAQVLVGQGYRLK 429

Query: 343 RLALFDQFPYTRHMECGVLL 362
           R  + D FP T H+E   L 
Sbjct: 430 RAGILDMFPQTAHVEAMALF 449


>gi|68069515|ref|XP_676669.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56496471|emb|CAH94117.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 744

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 18/162 (11%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            K ++  + +L CG G  S+ +A   +H D ++ ++I + S+ +A  N   N + N K +
Sbjct: 584 NKNMKNYIFDLCCGTGTISICIANAMKHEDIIVGIDICEESIISANKNAQINKIKNYKFI 643

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YP--HIL 319
           +   +E             +K+I   +     + VDPPRSGL  + +  + + +P   I+
Sbjct: 644 KGRVEELFSG--------EIKNISQQNCNI-IVIVDPPRSGLAQSVINTLSSTHPINQII 694

Query: 320 YISCNPDSLCRDLS---ILSTTHTIERLALFDQFPYTRHMEC 358
           Y+SCNP +L  +++    ++    I+ L   D FP+T H+EC
Sbjct: 695 YVSCNPSTLINNVTNLLFMNEYFKIKNLVFVDMFPHTYHLEC 736


>gi|237742795|ref|ZP_04573276.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229430443|gb|EEO40655.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 453

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   +++A+   +V A+EI K + E        N + N++ +         A
Sbjct: 308 IVDAYSGTGTIGMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFI-------NGA 360

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330
           + +E     L ++  ++ +  TI  DPPR GL+ + +  V       ++YISCNP +  R
Sbjct: 361 VEKE-----LVNLINNNQKIDTIIFDPPRKGLEASIIVTVAKLNLKEVVYISCNPSTFAR 415

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           D+ + S   + +++L   D FP T H+E   L+ R
Sbjct: 416 DVKLFSEKGYVLKKLQAVDMFPQTSHVETIALIQR 450


>gi|255034870|ref|YP_003085491.1| RNA methyltransferase, TrmA family [Dyadobacter fermentans DSM
           18053]
 gi|254947626|gb|ACT92326.1| RNA methyltransferase, TrmA family [Dyadobacter fermentans DSM
           18053]
          Length = 465

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  +  +AR   +V+ VE  + +V+ AR N   N + N          F   
Sbjct: 322 VYDLYTGTGTIANFVARSAKKVVGVEYVEAAVQDARINSQLNGITNTAF-------FAGD 374

Query: 273 MRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329
           MR       + +  +H++ R   I  DPPR+G+D   +  +++A P  ++Y+SCN  +  
Sbjct: 375 MRA-----IMNESFLHTHGRPDVIITDPPRAGMDVPVIETILKAAPDRVVYVSCNTATQA 429

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL+++S  + + R+   D FP T H+E   LLVRK
Sbjct: 430 RDLALMSEDYEVTRVQPVDMFPNTHHVENVALLVRK 465


>gi|254826049|ref|ZP_05231050.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|293595289|gb|EFG03050.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
          Length = 459

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV         + + 
Sbjct: 315 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENV---------YYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
            + E    +  +     +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 366 GKAEDVLPKWVN---EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L+  + I  +   D FP T H+E  VLL
Sbjct: 422 RDLALLAKKYRIRYMHPVDMFPQTAHVETVVLL 454


>gi|82751550|ref|YP_417291.1| RNA methyltransferase [Staphylococcus aureus RF122]
 gi|82657081|emb|CAI81518.1| RNA methyltransferase [Staphylococcus aureus RF122]
          Length = 453

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQKNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|226310579|ref|YP_002770473.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
           100599]
 gi|226093527|dbj|BAH41969.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus
           brevis NBRC 100599]
          Length = 460

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 16/162 (9%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +L+LYCG G   L LA +   V  +E+   +VE A  N   N   N       
Sbjct: 311 GLTGKELVLDLYCGTGTIGLWLAPYAREVRGIELIPEAVEDANRNAERNQAANASF---- 366

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323
                   R E    +         R   + VDPPR+GLDDA +  ++   P  I+Y+SC
Sbjct: 367 -----HVGRAEVLMPKWAK---QGTRPDVVVVDPPRTGLDDALIRSLLDVLPKKIVYVSC 418

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +L +D+  L   + +  +   D FP+T H+E   LL  K
Sbjct: 419 NPSTLAKDVGKLMQRYELVSVQPVDMFPHTAHVESVTLLTLK 460


>gi|206968113|ref|ZP_03229069.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
 gi|206737033|gb|EDZ54180.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
          Length = 459

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/374 (21%), Positives = 161/374 (43%), Gaps = 44/374 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +++      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    V +      A   + GD  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAA-ALTGDEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKCHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437

Query: 344 LALFDQFPYTRHME 357
           +   D FP+T H+E
Sbjct: 438 VQPVDMFPHTAHVE 451


>gi|119773768|ref|YP_926508.1| 23S rRNA methyluridine methyltransferase [Shewanella amazonensis
           SB2B]
 gi|143582879|sp|A1S382|RUMB_SHEAM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|119766268|gb|ABL98838.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella amazonensis
           SB2B]
          Length = 384

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 16/156 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L +L+CG G F L  A     V  +EI   +++ A+ + AA  ++N+    + S +F  
Sbjct: 236 SLWDLFCGVGGFGLHCANESLPVTGIEIEAEAIDCAKTSAAAMGLDNLSFAALDSTDFAM 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLC 329
             + +                + I V+PPR G+ +     + A+    I+Y SCNP++L 
Sbjct: 296 GQQAQE-------------VPEVIIVNPPRRGIGEELCERLSAFGPRAIIYSSCNPETLA 342

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +DL+++S  + I R+ LFD FP++ H E   LL+++
Sbjct: 343 KDLALIS-GYRIARVQLFDMFPHSDHFEVLCLLLKE 377


>gi|154496443|ref|ZP_02035139.1| hypothetical protein BACCAP_00735 [Bacteroides capillosus ATCC
           29799]
 gi|150274526|gb|EDN01603.1| hypothetical protein BACCAP_00735 [Bacteroides capillosus ATCC
           29799]
          Length = 412

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 160/381 (41%), Gaps = 46/381 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRA-EFHIWHDGDDLYHIMFDQQT 67
           YE+QL  K  +L +++  F  P   I   E P HYR +      W  G +L   ++ Q T
Sbjct: 52  YEEQLKRKQAKLEELLGKFG-PVAPILGMEHPWHYRNKVISSFAWGPGKNLVSGIYAQGT 110

Query: 68  KERMRIDYFMPGSLLINALMIEMMAT---IRLEP--------LLRAKLFQIDYLTSQSDQ 116
              + ++  +    +++  +  +       R +P        L+R  L +    T +   
Sbjct: 111 HRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDENRRTGLIRHVLCRHSLSTGE--- 167

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI----GRA---NKTKICLDRDYVDE 169
            +  L+    +    R  A R+++   A     Q +    G A   ++ KI   R Y+++
Sbjct: 168 VLAVLVTASPVLPGARAFAARVKELCPAIVTLAQNVNPRPGSAVLGDREKILYGRGYIED 227

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227
            L      + +R   +SF Q N  +   +L     +   + G   +L+ YCG G   L  
Sbjct: 228 VLC----GVKFRIAPSSFYQINP-VQTEVLYSTAISAARLTGKERVLDAYCGVGTIGLSA 282

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A H   V+ VE+ + +   A  N  AN++ N +     +  F   M       R + +D+
Sbjct: 283 AAHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAFLDGM-----AARGEQLDV 337

Query: 288 HSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTH-TIERL 344
                  +F+DPPR+G     +  + +  P   +YISCNP++  RDL  L+      E +
Sbjct: 338 -------VFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARGWRAESI 390

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP+T H+E   +L R+
Sbjct: 391 QGVDMFPHTEHIETVAVLTRR 411


>gi|227512910|ref|ZP_03942959.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           buchneri ATCC 11577]
 gi|227083910|gb|EEI19222.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           buchneri ATCC 11577]
          Length = 456

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 17/179 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           NSF Q N      + +  +   +  + D+ ++ YCG G  SL LA+   +V  VEI   +
Sbjct: 282 NSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEA 341

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N ++N K V   ++E            +L        +   I VDPPR G
Sbjct: 342 IEDAKRNAHINKISNCKFVVAKAEE------------QLGKWQKAGLKPDVIVVDPPRKG 389

Query: 304 LDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMEC 358
           LD++ +  + +  P  ++Y+SCNP +L RD  + +       + +   DQFP T H+E 
Sbjct: 390 LDESLIESVAEMSPQRLIYVSCNPATLARDAKLFAEHGYQINQPIQPVDQFPQTVHVES 448


>gi|332159394|ref|YP_004424673.1| putative RNA methyltransferase [Pyrococcus sp. NA2]
 gi|331034857|gb|AEC52669.1| putative RNA methyltransferase [Pyrococcus sp. NA2]
          Length = 408

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 25/175 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N+   ++++  V    +G +  +L++Y G G F + LA+   +V+  +  + ++
Sbjct: 249 NSFFQTNSYQAINLVRKVSEFVEGEK--ILDMYSGVGTFGIYLAKRGMKVVGFDSNEFAI 306

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E AR N+  N V                   E EF    D  +    F T+ VDPPR+GL
Sbjct: 307 EMARRNVEINEV-------------------EAEFFVGTDRAVEVKGFDTVIVDPPRAGL 347

Query: 305 DDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
               V  +  +    I+Y+SCNP +  RD+ +L   + IE +   D FP+T H+E
Sbjct: 348 HPKLVRRLNREKPDAIVYVSCNPKTFARDIKMLK--YKIEDIIALDMFPHTPHVE 400


>gi|87303686|ref|ZP_01086461.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 5701]
 gi|87281791|gb|EAQ73756.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 5701]
          Length = 462

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 19/156 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G FSL LA    RVL +E    SVE AR N   N +N +    + + +   A
Sbjct: 315 IVDAYCGIGTFSLPLAAAGARVLGLEQQPSSVEQARLNAGLNGLNGLT---LEAADVALA 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           +    E                + +DPPR GL +     + A P   + Y+SCNP +L R
Sbjct: 372 LPEALEG------------ADGLLLDPPRKGLPERVCEAILASPPERVAYLSCNPATLAR 419

Query: 331 DLSILSTTHTIE--RLALFDQFPYTRHMECGVLLVR 364
           DL+ L+   T+   R+   D FP T+H+E   +L R
Sbjct: 420 DLARLTAAGTLRLLRVQPIDFFPQTQHVEALAVLER 455


>gi|212224096|ref|YP_002307332.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009053|gb|ACJ16435.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 419

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 27/202 (13%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y+ ER+    + ++Y    NSF Q N+     +L+ V     G +  +L+LY G G F +
Sbjct: 243 YIRERI----KDVVYLIHPNSFFQTNSYALALLLKTVEGFADGER--VLDLYSGVGTFGV 296

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA+    V  VE+   +VE AR N   N V+ V  V                  R ++ 
Sbjct: 297 WLAKRGFAVEGVELNPFAVEMARKNAELNGVDVVFKV-----------------GRAEET 339

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIER 343
            I  Y   T+ VDPPR GL +A+  ++++    ++Y+SCNP +   D  + L   + +E 
Sbjct: 340 SIGDY--DTVIVDPPRKGLKEASKLLIKSGVEGVVYVSCNPRAFKLDYENHLKKAYQVEE 397

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
             L D FP+T H+E  ++L +K
Sbjct: 398 AVLADMFPHTPHVEAVIMLEKK 419


>gi|14521283|ref|NP_126758.1| putative RNA methyltransferase [Pyrococcus abyssi GE5]
 gi|50401701|sp|Q9UZR7|Y1078_PYRAB RecName: Full=Uncharacterized RNA methyltransferase PYRAB10780
 gi|5458501|emb|CAB49989.1| RNA methyltransferase, putative [Pyrococcus abyssi GE5]
          Length = 405

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 25/181 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N+   V+++  V    +G +  +L++Y G G F + LA+    V   +  + ++
Sbjct: 248 NSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAI 305

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E AR N+  N+V+                    EF    D ++    F T+ VDPPR+GL
Sbjct: 306 EMARRNVEINNVDA-------------------EFEVASDREVSVKGFDTVIVDPPRAGL 346

Query: 305 DDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
               V  + +  P  I+Y+SCNP++  RD+ +L   + I+ +   D FP+T H+E    L
Sbjct: 347 HPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIVALDMFPHTPHVELVAKL 404

Query: 363 V 363
           V
Sbjct: 405 V 405


>gi|330723828|gb|AEC46198.1| Uncharacterized RNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 363

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 20/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           NSF Q N  +  H  + ++   +  +GD +L+LY G G  SL++A+   +V+AVE  K +
Sbjct: 197 NSFYQVNKEVAQHAYQRIIDFVQ--EGDFVLDLYSGIGTISLLVAQKAKKVIAVEENKFA 254

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            + A +N   N +NNV        EF       ++F+ L D         TI VDP R G
Sbjct: 255 HKDALFNQKINKINNVSFKNKEVFEFL------KDFDDLVD---------TIIVDPAREG 299

Query: 304 LDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +  A +  +++  P  I+Y+SCNP +   D S+L   + I    + + F  T H+E  + 
Sbjct: 300 VQKAAIKEILRLNPKRIIYLSCNPATQAYDFSLLKHKYKIIFFEIHNMFVKTFHIENLIC 359

Query: 362 LVRK 365
           L RK
Sbjct: 360 LERK 363


>gi|167766442|ref|ZP_02438495.1| hypothetical protein CLOSS21_00948 [Clostridium sp. SS2/1]
 gi|167711851|gb|EDS22430.1| hypothetical protein CLOSS21_00948 [Clostridium sp. SS2/1]
 gi|291560880|emb|CBL39680.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
           SSC/2]
          Length = 543

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 26/231 (11%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + +A+K  I   +DY  E +      L ++    SF Q N  +   +L  
Sbjct: 243 LHTTNDSLADVVQADKIDILYGQDYFYEEIL----GLKFKISPFSFFQTNT-LGAEILYK 297

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                 G   D  + +LY G G  + +LA    +V+ VEI + +VEAA+ N   N ++N 
Sbjct: 298 TARDFVGETKDKVIFDLYSGTGTIAQMLAPVAKKVVGVEIVEEAVEAAKVNAELNGLDNC 357

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PH 317
           + +     +    +  + +F               I +DPPR G+    +  +  +    
Sbjct: 358 EFIAGDVLKVVDELEDKPDF---------------IVLDPPRDGIHPKAIQKIIDFGVEQ 402

Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366
           ++YISC P SL RDL +  +  + ++R    DQFP T H+E  VLL  +KP
Sbjct: 403 MVYISCKPTSLARDLEVFEAAGYKVKRATAVDQFPNTVHIETVVLLSQQKP 453


>gi|227523038|ref|ZP_03953087.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227089856|gb|EEI25168.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 456

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 17/179 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           NSF Q N      + +  +   +  + D+ ++ YCG G  SL LA+   +V  VEI   +
Sbjct: 282 NSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEA 341

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N ++N K V   ++E            +L        +   I VDPPR G
Sbjct: 342 IEDAKRNAHINKISNCKFVVAKAEE------------QLGKWQKAGLKPDVIVVDPPRKG 389

Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMEC 358
           LD++ +  V   +   ++Y+SCNP +L RD  + +       + +   DQFP T H+E 
Sbjct: 390 LDESLIESVAEMSLQRLIYVSCNPATLARDAKLFAEHGYQINQPIQPVDQFPQTVHVES 448


>gi|148549269|ref|YP_001269371.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida F1]
 gi|148513327|gb|ABQ80187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas putida F1]
          Length = 452

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             F Q NA +N  M+E  LA     Q D  +L+L+CG GNF+L LAR    V+AVE  + 
Sbjct: 281 GDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFALPLARQAREVVAVEGVQA 339

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V+      A    NNV   R    + +Q          L      +  F  + +DPPR 
Sbjct: 340 MVD---RAAANARNNNVHNARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRD 387

Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP T H+E   
Sbjct: 388 GAFEVVQGIARLKASRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMA 447

Query: 361 LL 362
           L 
Sbjct: 448 LF 449


>gi|153809759|ref|ZP_01962427.1| hypothetical protein RUMOBE_00140 [Ruminococcus obeum ATCC 29174]
 gi|149833937|gb|EDM89017.1| hypothetical protein RUMOBE_00140 [Ruminococcus obeum ATCC 29174]
          Length = 462

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 27/235 (11%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN---AG 193
           R+   +H     +  + ++++T+I   +DY  E L      L +R    SF QPN   A 
Sbjct: 249 RIVGIMHILNDSLSDVVQSDETRILYGQDYFYETLL----GLKFRISTFSFFQPNSLAAE 304

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +  +++   +  T G++  + +LY G G  + +LA     V+ VEI + +V AAR N   
Sbjct: 305 VLYNIVRDYIQNTSGME--VFDLYSGTGTIAQLLAPVAKEVIGVEIVEDAVAAARENAKL 362

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++N K +                 + LK +D  + +   I +DPPR G+    +  + 
Sbjct: 363 NGLDNCKFIAG---------------DVLKVLDDLTEKPDVIVLDPPRDGIHPKALPKIL 407

Query: 314 AY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +Y    I+Y+SC   SL RDL + L   + +E+    DQF  T   E   LLV++
Sbjct: 408 SYGVKRIVYVSCKATSLARDLEAFLQAGYRLEKACCVDQFCETVWTEAVALLVKE 462


>gi|332523114|ref|ZP_08399366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314378|gb|EGJ27363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 451

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 155/386 (40%), Gaps = 54/386 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  FQ    + F         EP HYR + +F     G  ++  +
Sbjct: 90  YPKQLDFKDDVIRQSLKKFQPQGFENFTIKHTIGMVEPWHYRAKLQFQTRSFGGKVHAGL 149

Query: 63  FDQQTKERMRIDYFMPGSLLINALM-------------------IEMMATIRLEPLLRAK 103
           F + +   + I+  +       A++                   I  + T+ +     + 
Sbjct: 150 FAEGSHRLISIENCLVQDSTTQAIINDIVCLLERHRIPIYNERHIAGLRTVMIRKGQSSG 209

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
             Q+ ++TS+ +  I  L+   + + +  +  AI    +  +  Y         +T+I  
Sbjct: 210 QVQLIFVTSK-ELHIAPLVKELVANFEEIKTVAINYNRSKTSGLY-------GERTEIIW 261

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            ++ ++E +      L  R    +F Q N      +   V+ A +  + D +++ YCG G
Sbjct: 262 GKETINEDVLDYSFALSPR----AFYQLNPQQTEVLYSEVVKALEVSENDQIIDAYCGVG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A+H   +  ++I   ++  A+ N  A    N       +++      +E     
Sbjct: 318 TIGFAFAKHVKSIRGMDIIPEAIADAKKNAKAMGFTNTYYETGKAEDLIPKWYQE----- 372

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLD+  +  V  Y    ++Y+SCN  +L RDL  L+  +
Sbjct: 373 -------GYRADAIIVDPPRTGLDERLLETVVKYQPEKMVYVSCNTSTLARDLVTLAKFY 425

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E +   D FP+T   E  V L +K
Sbjct: 426 QVEYIQSVDMFPHTARTEAVVKLQKK 451


>gi|77460439|ref|YP_349946.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
           Pf0-1]
 gi|91207809|sp|Q3K8E9|RUMA_PSEPF RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|77384442|gb|ABA75955.1| 23S rRNA m(5)U-1939 methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 461

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 17/188 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L YR     F Q NAG+N  M+   L   K    + +L+L+CG GNF+L LA+    V+A
Sbjct: 274 LAYR--PGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCGLGNFALPLAKAAREVVA 331

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +  V+ A  N A+N+++N K  +    + +Q          L D +     F  + 
Sbjct: 332 VEGVQTMVDRAAANAASNNLHNTKFFQA---DLSQP---------LTDAEWIGNGFSAVL 379

Query: 297 VDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTR 354
           +DPPR G  +    +       ++Y+SCNP +L RD + ++   + ++R  + D FP T 
Sbjct: 380 LDPPRDGAFEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQTA 439

Query: 355 HMECGVLL 362
           H+E   L 
Sbjct: 440 HVEAMALF 447


>gi|329767396|ref|ZP_08258921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
           M341]
 gi|328836085|gb|EGF85776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
           M341]
          Length = 458

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 23/159 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL  A+   +V  +EI + +V  AR N   N++ N + +   S++    
Sbjct: 314 IIDAYCGIGTISLFAAKKVKKVYGIEIVEAAVLDARENAKNNNIENAEFLLGKSEDV--- 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD------ATVGMVQAYPHILYISCNPD 326
                    +K +   + +   + VDPPR G ++      A++G+      I+Y+SCNP 
Sbjct: 371 ---------IKKLISQNIKLDAVIVDPPRKGCEESFLRDLASMGI----EKIVYVSCNPS 417

Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L RD+ I+ S  + +  +   D FP T H+E   LL R
Sbjct: 418 TLARDMEIMRSLGYKLGAVQPVDMFPGTYHVEAVTLLER 456


>gi|313500179|gb|ADR61545.1| RumA [Pseudomonas putida BIRD-1]
          Length = 452

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             F Q NA +N  M+E  LA     Q D  +L+L+CG GNF+L LAR    V+AVE  + 
Sbjct: 281 GDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFALPLARQAREVVAVEGVQA 339

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V+      A    NNV   R    + +Q          L      +  F  + +DPPR 
Sbjct: 340 MVD---RAAANARNNNVHNARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRD 387

Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP T H+E   
Sbjct: 388 GAFEVVQGIARLKASRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMA 447

Query: 361 LL 362
           L 
Sbjct: 448 LF 449


>gi|323693629|ref|ZP_08107829.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323502320|gb|EGB18182.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 461

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 31/234 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           ++   LH +   +    +   T++   +DY  E L      L +R    SF Q N+ +  
Sbjct: 243 KMAGILHTKNDSLADAVKDEGTEVLYGKDYFFEELL----GLKFRISPFSFFQTNS-LGA 297

Query: 197 HML-----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            +L     E+V   TKG    + +LY G G  + +LA   ++V+ VEI K +VEAA+ N 
Sbjct: 298 EVLYEKTREYV-GETKGKV--VFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENA 354

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N ++N         EF          + LK +D  + + + I +DPPR G+    +  
Sbjct: 355 RLNGLDNC--------EFIAG-------DVLKVVDELTDKPELIVLDPPRDGIHPKAIEK 399

Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           +  +    ++Y+SC P SL RDL IL    + +E+    D FP T ++E  +++
Sbjct: 400 IIGFGVERMVYVSCKPTSLARDLVILQENGYRVEKGCCVDMFPGTANVEVVIMM 453


>gi|154506231|ref|ZP_02042969.1| hypothetical protein RUMGNA_03773 [Ruminococcus gnavus ATCC 29149]
 gi|153793730|gb|EDN76150.1| hypothetical protein RUMGNA_03773 [Ruminococcus gnavus ATCC 29149]
          Length = 559

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 32/236 (13%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + ++++T+I   +DY  E+L      L ++    SF QPN+       E 
Sbjct: 246 LHILNDSLSDVVQSDETRIIYGQDYFYEKLL----NLEFKITPFSFFQPNS----RGAEV 297

Query: 202 VLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +   GD+      +L+ G G  + VLA    +V+ VEI + +VEAA+ N A N +
Sbjct: 298 LYSTVRDYIGDINDMTVFDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAAHNGL 357

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           +N K +                F  L +I+    +   I +DPPR G+    +  +  Y 
Sbjct: 358 SNCKFIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILDYG 402

Query: 317 --HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKPSG 368
              I+YISC   SL RDL ++    + + +    DQF  T H+E  VLL  +KP G
Sbjct: 403 VDKIVYISCKVTSLARDLEMIQARGYEVVKSVAVDQFCQTVHVETVVLLSHKKPDG 458


>gi|260063140|ref|YP_003196220.1| RNA methyltransferase, TrmA family protein [Robiginitalea biformata
           HTCC2501]
 gi|88784709|gb|EAR15879.1| RNA methyltransferase, TrmA family protein [Robiginitalea biformata
           HTCC2501]
          Length = 509

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 18/193 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           L +R    SF Q N+     + + V  LA   G +  + +LY G G  +  +AR    V+
Sbjct: 327 LAFRITPKSFYQTNSRQAYALYKKVRELAGLTGKE-RVYDLYTGLGTIAQFVARQAREVI 385

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKT 294
            +E    ++EAAR N A N ++N +      KE FT       EF     ++ H  R   
Sbjct: 386 GIEAVADAIEAARVNAAENGISNTRFFAGDMKELFTS------EF-----LETHG-RPDV 433

Query: 295 IFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           +  DPPR G+    V  +++  P  I+Y+SCN  +  RDL+++   + +  +   D FP 
Sbjct: 434 VITDPPRDGMHKYVVAQLLEILPERIVYVSCNSATQARDLALMRDAYRVAHVQPVDMFPQ 493

Query: 353 TRHMECGVLLVRK 365
           T H+E  VLL R+
Sbjct: 494 THHVENIVLLERR 506


>gi|327461108|gb|EGF07441.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 464

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+    V  VE+   +VE +R N A N + N   V   ++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKQVKEVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVALLVK 463


>gi|318041410|ref|ZP_07973366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CB0101]
          Length = 453

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +LE YCG G FSL LA     VL +E+   SV  AR N      N +   R    +   +
Sbjct: 313 VLEAYCGIGTFSLPLAAAGLDVLGLELHHASVAQARANA---ERNALPTARFEIADVAAS 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
           +              H    + + VDPPR GL    +  ++QA P  I YISCNP +L R
Sbjct: 370 LAE------------HLVWAEALLVDPPRKGLAPEVMDAILQAPPRRIAYISCNPATLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +LS   + I  +   D FP T H+EC  LL R
Sbjct: 418 DLGLLSEAGYRIRPIQPVDFFPQTSHVECLALLER 452


>gi|195927220|pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
           (Uracil-54, C5)-Methyltransferase In Complex With
           S-Adenosyl-L- Homocysteine
          Length = 425

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 25/181 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N+   V+++  V    +G +  +L++Y G G F + LA+    V   +  + ++
Sbjct: 268 NSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAI 325

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E AR N+  N+V+                    EF    D ++    F T+ VDPPR+GL
Sbjct: 326 EMARRNVEINNVDA-------------------EFEVASDREVSVKGFDTVIVDPPRAGL 366

Query: 305 DDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
               V  + +  P  I+Y+SCNP++  RD+ +L   + I+ +   D FP+T H+E    L
Sbjct: 367 HPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIVALDMFPHTPHVELVAKL 424

Query: 363 V 363
           V
Sbjct: 425 V 425


>gi|162447375|ref|YP_001620507.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985482|gb|ABX81131.1| RNA methyltransferase, TrmA family [Acholeplasma laidlawii PG-8A]
          Length = 460

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 16/152 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G+   S  +A+   +V A+EI + SV++A  ++  N++ NV +++    +F +A
Sbjct: 314 VIDAYAGSAPISHYIAKDVKKVYAIEIDQRSVQSAILSLKRNNIKNVTVIQ---SDFKKA 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                    LK++++ +     +F DPPR+GL   T+  +  Y    ++Y SCNP +L +
Sbjct: 371 ---------LKNLEVDT--IDAMFFDPPRTGLGYDTIKQILKYKPKKLIYGSCNPSTLAK 419

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL  L  T+ ++ L   D FPYT  +E   LL
Sbjct: 420 DLEDLLKTYELKSLIPMDMFPYTPLVESVSLL 451


>gi|253755011|ref|YP_003028151.1| RNA methyltransferase [Streptococcus suis BM407]
 gi|251817475|emb|CAZ55216.1| putative RNA methyltransferase [Streptococcus suis BM407]
          Length = 450

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           DL++ YCG G      A+    V  ++I   ++E A+ N     ++N       ++E   
Sbjct: 307 DLIDAYCGVGTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIP 366

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
              +E             YR   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L 
Sbjct: 367 KWYQE------------GYRADALVVDPPRTGLDEKLLKTILNYKPAKMVYVSCNVSTLA 414

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL  LS  + +E +   D FP+T   E  V L +K
Sbjct: 415 RDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK 450


>gi|228963568|ref|ZP_04124721.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796086|gb|EEM43541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 459

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 163/379 (43%), Gaps = 44/379 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +++      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    + + +    A   + GD  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAA-ALTGDEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL RD+  L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437

Query: 344 LALFDQFPYTRHMECGVLL 362
           +   D FP+T H+E  V L
Sbjct: 438 VQPVDMFPHTAHVENVVRL 456


>gi|146318097|ref|YP_001197809.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           05ZYH33]
 gi|146320277|ref|YP_001199988.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           98HAH33]
 gi|253751287|ref|YP_003024428.1| RNA methyltransferase [Streptococcus suis SC84]
 gi|253753188|ref|YP_003026328.1| RNA methyltransferase [Streptococcus suis P1/7]
 gi|145688903|gb|ABP89409.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           05ZYH33]
 gi|145691083|gb|ABP91588.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           98HAH33]
 gi|251815576|emb|CAZ51159.1| putative RNA methyltransferase [Streptococcus suis SC84]
 gi|251819433|emb|CAR44912.1| putative RNA methyltransferase [Streptococcus suis P1/7]
 gi|292557857|gb|ADE30858.1| tRNA (uracil-5-)-methyltransferase [Streptococcus suis GZ1]
 gi|319757569|gb|ADV69511.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
           methyltransferase [Streptococcus suis JS14]
          Length = 450

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           DL++ YCG G      A+    V  ++I   ++E A+ N     ++N       ++E   
Sbjct: 307 DLIDAYCGVGTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIP 366

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
              +E             YR   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L 
Sbjct: 367 KWYQE------------GYRADALVVDPPRTGLDEKLLKTILNYKPAKMVYVSCNVSTLA 414

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL  LS  + +E +   D FP+T   E  V L +K
Sbjct: 415 RDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK 450


>gi|330832292|ref|YP_004401117.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3]
 gi|329306515|gb|AEB80931.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3]
          Length = 435

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           DL++ YCG G      A+    V  ++I   ++E A+ N     ++N       ++E   
Sbjct: 292 DLIDAYCGVGTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIP 351

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
              +E             YR   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L 
Sbjct: 352 KWYQE------------GYRADALVVDPPRTGLDEKLLKTILDYKPAKMVYVSCNVSTLA 399

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL  LS  + +E +   D FP+T   E  V L +K
Sbjct: 400 RDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK 435


>gi|223932599|ref|ZP_03624599.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591]
 gi|302023441|ref|ZP_07248652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus suis
           05HAS68]
 gi|223898709|gb|EEF65070.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591]
          Length = 450

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           DL++ YCG G      A+    V  ++I   ++E A+ N     ++N       ++E   
Sbjct: 307 DLIDAYCGVGTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIP 366

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
              +E             YR   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L 
Sbjct: 367 KWYQE------------GYRADALVVDPPRTGLDEKLLKTILDYKPAKMVYVSCNVSTLA 414

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL  LS  + +E +   D FP+T   E  V L +K
Sbjct: 415 RDLVELSKAYKVEYIQSVDMFPHTARTEAVVKLSKK 450


>gi|167032268|ref|YP_001667499.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida
           GB-1]
 gi|166858756|gb|ABY97163.1| RNA methyltransferase, TrmA family [Pseudomonas putida GB-1]
          Length = 452

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             F Q NA +N  M+E  LA     Q D  +L+L+CG GNF+L LAR    V+AVE  + 
Sbjct: 281 GDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFALPLARQAREVVAVEGVQA 339

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V+      A    NNV   R    + +Q          L      +  F  + +DPPR 
Sbjct: 340 MVD---RAAANARNNNVHNARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRD 387

Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP T H+E   
Sbjct: 388 GAFEVVQGIARLKASRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMA 447

Query: 361 LL 362
           L 
Sbjct: 448 LF 449


>gi|71017959|ref|XP_759210.1| hypothetical protein UM03063.1 [Ustilago maydis 521]
 gi|46098831|gb|EAK84064.1| hypothetical protein UM03063.1 [Ustilago maydis 521]
          Length = 574

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 31/222 (13%)

Query: 162 LDRDYV-DERLTVAGRTLI--YRQIENSFTQPNAGINVHMLEWV---LAATKGIQGD--- 212
           LD + V D + TV  R L   +     +F Q N  I   +L++V   + +     G+   
Sbjct: 364 LDTEVVTDHKATVKERVLTTKFESPAGTFFQNNRSILPSLLDYVREAITSASSTTGEDSA 423

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               L++ YCG+G FSL LA  F  V  VEI+  S++ A  N   N + N K +  ++++
Sbjct: 424 QARYLVDAYCGSGLFSLCLASLFREVSGVEISSESIKYATKNAELNGITNTKFLAGNAED 483

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPD 326
                     F +++    +     T+ +DPPR G D   +  +V   P HI+Y+SCN  
Sbjct: 484 I---------FGKIE----YPADKTTVIIDPPRRGCDQEFIRQLVNLAPKHIVYVSCNVH 530

Query: 327 SLCRDLSILSTT---HTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD+  L +    + I+ +   D FP T H+E   +L R+
Sbjct: 531 TQARDVGQLISKDPRYKIKSVRGADLFPQTHHVEGVAVLERR 572


>gi|228899170|ref|ZP_04063440.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           4222]
 gi|228860439|gb|EEN04829.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           4222]
          Length = 459

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 164/379 (43%), Gaps = 44/379 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +++      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFVAEVQKQIPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    + + +    A   + GD  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAA-ALTGDEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEY 437

Query: 344 LALFDQFPYTRHMECGVLL 362
           +   D FP+T H+E  V L
Sbjct: 438 VQPVDMFPHTAHVENVVRL 456


>gi|120436238|ref|YP_861924.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803]
 gi|117578388|emb|CAL66857.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803]
          Length = 469

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 26/216 (12%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +   GR  I+ ++E         SF Q N+    + L  +      ++GD L
Sbjct: 267 DTIYDQEVICFKGRDHIFEEMEGLKFKINAKSFYQTNSE-QAYNLYKITRDYANLKGDEL 325

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQ 271
             +LY G G  +  +A++  +V+ VE    +++ A+ N   N + NV+  V    K FT+
Sbjct: 326 VYDLYTGTGTIAQFVAKNAKKVIGVEAVPEAIKDAKENAERNKIQNVEFYVGDMKKVFTE 385

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329
           +            I+ H +    I  DPPR G+  D    ++   P  I+Y+SCN  +  
Sbjct: 386 SF-----------INKHGHP-DVIITDPPRDGMHKDVVAQIIGILPERIVYVSCNSATQA 433

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDLS+L   + + ++   D FP T H+E  V L ++
Sbjct: 434 RDLSLLDEHYKVTQIQAVDMFPQTHHVENVVCLEKR 469


>gi|295094140|emb|CBK83231.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus sp. ART55/1]
          Length = 550

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + +LA    +V+ VEI + +VEAAR N   N ++N + +     +    
Sbjct: 317 IFDLYSGTGTIAQLLAPVAKKVIGVEIVEEAVEAARVNAELNGLDNCEFIAGDVLKVIDE 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           +  + +F               I +DPPR G++   +  +  Y    ++YISC P SL R
Sbjct: 377 IEEKPDF---------------IVLDPPRDGINPKALTKIINYGVNELVYISCKPTSLAR 421

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L    + + +    DQFP T H+E  VLL +
Sbjct: 422 DLVTLQENGYYVTKACAVDQFPGTVHVETVVLLSK 456


>gi|325915832|ref|ZP_08178131.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537953|gb|EGD09650.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 418

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 241 LAFRPLD--FIQVNASLNQKMIAHALALLDARPDDRVLDLFCGLGNFTLPLARTVREVVG 298

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 299 VEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRNAPWMRQ---------GFDKLL 346

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 347 LDPPRSGALEVLQQLPLKKFDRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 406

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 407 AHVESIAVFERR 418


>gi|315145231|gb|EFT89247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2141]
 gi|315161930|gb|EFU05947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0645]
          Length = 468

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 323 VVDAYCGIGTIGLNLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 375 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 430

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 431 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 465


>gi|300766632|ref|ZP_07076549.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300495732|gb|EFK30883.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 457

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 18/164 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ Y G G  SL +A+H  +V  VEI   +++ AR N   N + N   V  S
Sbjct: 305 GLTGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDS 364

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISC 323
           ++   +AM + +      D+         I VDPPR GLD D      +  P  ++YISC
Sbjct: 365 AE---KAMAKWQADGVKPDV---------IVVDPPRKGLDADFIKSAGEMAPKRVVYISC 412

Query: 324 NPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +L RD+   +    H    +   DQFP T H+E   +L R+
Sbjct: 413 NPSTLVRDVQRFAEYGYHISAPVQPVDQFPQTPHIESVTVLERE 456


>gi|160894134|ref|ZP_02074912.1| hypothetical protein CLOL250_01688 [Clostridium sp. L2-50]
 gi|156864167|gb|EDO57598.1| hypothetical protein CLOL250_01688 [Clostridium sp. L2-50]
          Length = 463

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 101/222 (45%), Gaps = 32/222 (14%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212
           K  +   RDY++E +      L ++    SF Q     N    E + +  +   GD    
Sbjct: 264 KVTLLYGRDYIEEEVL----GLHFQISPFSFFQ----TNTKSAERLYSKAREYAGDTKDK 315

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LY G G  + +L+    +V+ VEI + +VEAAR N  +N ++N         EF  
Sbjct: 316 LIFDLYSGTGTIAQMLSPVASKVIGVEIVEEAVEAARENAKSNGLDNC--------EFIA 367

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                   + LK ID    +   I +DPPR G++   +  +  Y    I+YISC P SL 
Sbjct: 368 G-------DVLKVIDTIEEKPDLIILDPPRDGINPKALLKIINYGVDEIVYISCKPTSLA 420

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           RDL  L    + +++    DQF  T H+E  VLL  K S  H
Sbjct: 421 RDLVTLQEHGYYVKKACAVDQFVNTGHVETCVLL-EKTSATH 461


>gi|319939659|ref|ZP_08014018.1| TrmA family TRNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
 gi|319811248|gb|EFW07554.1| TrmA family TRNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
          Length = 452

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N A    NN      +++     
Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAARLGFNNTHYETGTAESIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  SL R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSSLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  LS  + +  +   D FP+T   E  V L+RK
Sbjct: 416 DLVQLSKVYDVHYIQSVDMFPHTARTEAVVKLIRK 450


>gi|300861732|ref|ZP_07107812.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TUSoD Ef11]
 gi|300848257|gb|EFK76014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TUSoD Ef11]
          Length = 457

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  +E+ + +V+ A         NN K+  + +  FT  
Sbjct: 312 VVDAYCGIGTIGLNLAQDAKQVYGIEVIEEAVKDAE--------NNAKLNNIENATFTAG 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           +  E     L  +  +  +   + VDPPR GLD   V  +++  P  I+Y+SCNP +L R
Sbjct: 364 LAEE----LLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLAR 419

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+++L+   +  + +   D FP T H+E   LL +
Sbjct: 420 DIALLTEGGYEAKEIQPVDNFPQTTHIESVTLLTK 454


>gi|90580331|ref|ZP_01236138.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
 gi|90438633|gb|EAS63817.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
          Length = 450

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 87/181 (48%), Gaps = 15/181 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +NV M+E  +       Q  +L+L+CG GNFSL LAR    V+ VE     V 
Sbjct: 271 FIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVA 330

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N AAN ++N    + +  E    +   +E            +F  I +DP R+G  
Sbjct: 331 RATANAAANGLDNATFYQANLDEDVTKLVWAQE------------QFDKILLDPARAGAA 378

Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363
                +V   P  ++Y+SCNP +L RD   +L   + + RL + D FP+T H+E   L V
Sbjct: 379 GVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDMFPHTGHLESMTLFV 438

Query: 364 R 364
           +
Sbjct: 439 K 439


>gi|28377929|ref|NP_784821.1| RNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|50401551|sp|Q88XP4|Y1151_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_1151
 gi|28270763|emb|CAD63668.1| RNA methyltransferase [Lactobacillus plantarum WCFS1]
          Length = 457

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 18/164 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ Y G G  SL +A+H  +V  VEI   +++ AR N   N + N   V  S
Sbjct: 305 GLTGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDS 364

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISC 323
           ++   +AM + +      D+         I VDPPR GLD D      +  P  ++YISC
Sbjct: 365 AE---KAMAKWQADGVKPDV---------IVVDPPRKGLDADFIKSAGEMAPKRVVYISC 412

Query: 324 NPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +L RD+   +    H    +   DQFP T H+E   +L R+
Sbjct: 413 NPSTLVRDVQRFAEYGYHISAPVQPVDQFPQTPHIESVTVLERE 456


>gi|332162249|ref|YP_004298826.1| 23S rRNA methyluridine methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666479|gb|ADZ43123.1| 23S rRNA methyluridine methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860383|emb|CBX70693.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia
           enterocolitica W22703]
          Length = 375

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 18/156 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    R+  +EI+  ++  AR +     + NV    + S +F  
Sbjct: 236 SMWDLFCGVGGFGLHCADTETRLTGIEISAEAIACARQSADQLGLKNVTFAALDSTQFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A   E +  +L            + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAQLCEYLSQMAPQFILYSSCNAETMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +D+S+L T + IER+ LFD FP+T H E   LL+++
Sbjct: 341 KDISLL-TDYRIERVQLFDMFPHTAHYEVLTLLIKR 375


>gi|319954120|ref|YP_004165387.1| 23S rRNA m(5)u-1939 methyltransferase [Cellulophaga algicola DSM
           14237]
 gi|319422780|gb|ADV49889.1| 23S rRNA m(5)U-1939 methyltransferase [Cellulophaga algicola DSM
           14237]
          Length = 472

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 26/216 (12%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +  AGR  I+ ++E         SF Q N+    + L  +     G+ G+ L
Sbjct: 269 DTIYDQEIVCFAGRDHIFEEMEGLKFKINAKSFYQTNSD-QAYELYKITRDFAGLTGNEL 327

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271
             +LY G G  +  +A+   +V+ +E    ++E A+ N   N + N        K  F +
Sbjct: 328 VYDLYTGTGTIAQFVAKKAKKVVGIEAVPEAIEDAKANAIFNKIENTSFFAGDMKNIFNE 387

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
              RE   N   DI         I  DPPR G+    V  + A     ++Y+SCN  +  
Sbjct: 388 EFIRE---NGTPDI---------IITDPPRDGMHKDVVAQILAIAPQKVVYVSCNSATQA 435

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL ++   + I +    D FP T H+E  VLL ++
Sbjct: 436 RDLELMKDDYKITKTQAVDMFPQTHHVENVVLLEKR 471


>gi|313123184|ref|YP_004033443.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279747|gb|ADQ60466.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 451

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           Y+D+++      L +     SF Q N+     + +  +      + DL+ + Y G G   
Sbjct: 261 YIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTIG 316

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E        
Sbjct: 317 LSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE-------- 368

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341
                 +   IFVDPPR GL    +   V+  P  ++YISCNP +L RD+ +L    +T 
Sbjct: 369 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMKAGYTT 424

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + ++  D FP T H+E   +L R
Sbjct: 425 DLVSPVDMFPQTPHVESVTVLER 447


>gi|50292305|ref|XP_448585.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527897|emb|CAG61548.1| unnamed protein product [Candida glabrata]
          Length = 585

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 21/160 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  ++  D+V+ VEI+  SV  A  N   N V N K +   +++  ++
Sbjct: 438 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAERNAKNNGVENCKFIVGKAEKLFES 497

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           +          D    S    ++ +DPPR G D+  +  + AY    I+YISCN  S  R
Sbjct: 498 I----------DTPADS---TSVILDPPRKGCDELFLKQLAAYNPARIVYISCNVHSQAR 544

Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+            + +E +  FD FP T H+E   +L R
Sbjct: 545 DVQYFLKDTPEGKNYRVESIRGFDFFPQTHHVESVCVLSR 584


>gi|119774169|ref|YP_926909.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella amazonensis
           SB2B]
 gi|143581857|sp|A1S4D3|RUMA_SHEAM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|119766669|gb|ABL99239.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella amazonensis
           SB2B]
          Length = 443

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 24/195 (12%)

Query: 174 AGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           +G  L Y Q++         +F Q N  +N  M+   +       G+ +L+L+CG GNFS
Sbjct: 253 SGHELPYYQLDGLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHAGERVLDLFCGVGNFS 312

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA+    V+ VE     V  A+ N A N ++N+        + ++ +  E    ++  
Sbjct: 313 LPLAKQGAEVVGVEGVPEMVAQAKQNAAINGLDNLSFY---CADLSEDLAAEPWLGKI-- 367

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIE 342
                     + +DP R+G  ++   + +  P  +LY+SCNP SL RD  +L    + + 
Sbjct: 368 --------DKLLLDPARAGAYESLKWLKKMKPAKVLYVSCNPASLARDSVLLFEAGYQLT 419

Query: 343 RLALFDQFPYTRHME 357
           RL L D FP T H E
Sbjct: 420 RLGLVDMFPQTHHSE 434


>gi|240103925|ref|YP_002960234.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
 gi|239911479|gb|ACS34370.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
          Length = 421

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 95/213 (44%), Gaps = 35/213 (16%)

Query: 165 DYVDERLTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214
           D   E L VAG   I  +IE        NSF Q N+    + LE +L A +       +L
Sbjct: 231 DPRGEPLHVAGSQFIRERIEDVVYLIHPNSFFQTNS----YALELLLRAVENFTDGERVL 286

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G F + LA+    V  VE+   +VE A  N   N VN                 
Sbjct: 287 DLYSGVGTFGVYLAKRGFTVEGVEVNPFAVEMANRNTEINGVNA---------------- 330

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL- 332
            +    R ++  I  Y   T+ VDPPR GL +    +V+     ++Y+SCNP +   D  
Sbjct: 331 -QFRVGRAEETPIGDY--DTVIVDPPRKGLRETAELLVKGGIERVVYVSCNPKAFRLDYK 387

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + L   + IE   L D FP+T H+E  V LVR+
Sbjct: 388 NHLRKAYRIEDAVLVDMFPHTPHVEAVVELVRR 420


>gi|227893050|ref|ZP_04010855.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           ultunensis DSM 16047]
 gi|227865163|gb|EEJ72584.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           ultunensis DSM 16047]
          Length = 450

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 96/218 (44%), Gaps = 24/218 (11%)

Query: 157 KTKICLD-RDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
           KT + L  +DYV   D+ +T     L +R    SF Q N+     +    +        D
Sbjct: 246 KTNVILGQKDYVVYGDDHITDQIGNLKFRISPKSFFQINSLQTPRLYNLAIEKADLKPSD 305

Query: 213 LL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ + Y G G   L +A+H   V  +E+   +V  A  N   N+++N K V   ++E   
Sbjct: 306 VVVDAYSGIGTIGLSVAKHVKAVRGMEVIADAVRDANANAKLNNISNAKYVTGKAEEIMP 365

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDS 327
              +E              +   +FVDPPR GL     DATV        ++YISCNP +
Sbjct: 366 HWAKE------------GLKTDVVFVDPPRKGLTPEFIDATVKT--GPKKVVYISCNPAT 411

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           + RDL +     +  +R+   D FP T H+E   +L +
Sbjct: 412 MIRDLQLFKEQGYQFDRIDPVDMFPQTPHVEAVTILTK 449


>gi|194751718|ref|XP_001958172.1| GF10790 [Drosophila ananassae]
 gi|190625454|gb|EDV40978.1| GF10790 [Drosophila ananassae]
          Length = 613

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 20/167 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL++ CG G  +L  A+H  +V+ VEI   ++  A +N   N + N K    +S +F ++
Sbjct: 409 LLDICCGTGTITLSFAKHCRKVMGVEIVPDAIRDAEFNAMVNGITNSKFYTGNSDDFIKS 468

Query: 273 MRRER--EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS 327
           M R+   E    K +D+         VDPPR+GL + ++  ++   A   ++Y+SCNP S
Sbjct: 469 MVRDALYEQEPGKPVDL------VALVDPPRAGLHNRSITAIRSASAIKRLIYVSCNPHS 522

Query: 328 LCR---DLSILSTTH------TIERLALFDQFPYTRHMECGVLLVRK 365
             R   DL+   + H        +     D FP+T H E  +L  R+
Sbjct: 523 AKRNFIDLARPESKHYKGEPFYPKSAVAVDMFPHTTHTELIILFERE 569


>gi|154503473|ref|ZP_02040533.1| hypothetical protein RUMGNA_01297 [Ruminococcus gnavus ATCC 29149]
 gi|153795573|gb|EDN77993.1| hypothetical protein RUMGNA_01297 [Ruminococcus gnavus ATCC 29149]
          Length = 464

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  + +LYCG G  SL LA++  +V  VEI   ++E AR N   N + N K     +
Sbjct: 305 LKGDETVWDLYCGIGTISLFLAQNAKQVYGVEIIPQAIEDARKNAQINGIENAKFYVGKA 364

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
           +E           +  K           I VDPPR G +++ +  MVQ  P  I+Y+SC+
Sbjct: 365 EEVLPGYYA----DYAKAHPGEQAHADVIVVDPPRKGCEESLLETMVQMQPERIVYVSCD 420

Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +L RDL  L    + + ++   DQF  T H+E  VLL R+
Sbjct: 421 SATLARDLKYLCGNGYELVKVRAVDQFSQTVHVETCVLLQRR 462


>gi|28212064|ref|NP_783008.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
 gi|50401759|sp|Q891A0|Y2481_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_02481
 gi|28204507|gb|AAO36945.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
          Length = 460

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 17/159 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  + + YCG G  SL L++   +V  VEI   ++E+A+ N   N+V+NV  +   S
Sbjct: 306 LKGDEVVFDAYCGTGTISLFLSQKAKKVYGVEIVNEAIESAKLNARENNVDNVDFIVGES 365

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
           ++    +  +              +   + VDPPR G + + +  M +  P  I+Y+SC+
Sbjct: 366 EQIIPELIEK------------GIKADVVVVDPPRKGCEKSLLEAMAKMAPEKIVYVSCD 413

Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           P +L RDL +L    +   ++   D F  T H+E  +L+
Sbjct: 414 PATLARDLGVLEELGYKTMKVQPVDMFSNTYHVETIILM 452


>gi|147677853|ref|YP_001212068.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum
           SI]
 gi|146273950|dbj|BAF59699.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum
           SI]
          Length = 470

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 26/217 (11%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGD 212
             K++    R+++ +RL      LI+R   +SF Q N    + +   V   AA  G +  
Sbjct: 272 GKKSRCLAGREHIKDRLG----HLIFRISPSSFYQVNPVQTLVLYNKVQQYAALTGRE-T 326

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G+ +L LA    RV  +E    +V  AR N A N + N + +    +     
Sbjct: 327 VVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITNAEFLTGKVESL--- 383

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSL 328
                    +  +     R + + +DPPR G      +A V M    P ++Y+SCNP +L
Sbjct: 384 ---------IPILAAQGQRPEVVVLDPPRHGCGREVLEAVVQM--QVPRLVYVSCNPATL 432

Query: 329 CRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            RDL   +   + ++ +   D FP+T H+EC VL+ R
Sbjct: 433 ARDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSR 469


>gi|205372478|ref|ZP_03225291.1| RNA methyltransferase-like protein [Bacillus coahuilensis m4-4]
          Length = 456

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 19/164 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ YCG G  SL LA     V  VEI   ++  A+ N   N   NV+     
Sbjct: 306 GLTGNETVIDAYCGIGTISLFLAERAKHVYGVEIVPEAIVDAKRNAELNGFTNVEFEVGP 365

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323
           +++   A      ++R    D+       + VDPPR G D+  +  ++      ++Y+SC
Sbjct: 366 AEDVIPAW-----YDRGIKADV-------LVVDPPRKGCDEKLLDTIKKMKPEKVVYVSC 413

Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +L RDL +L     +T+E +   D FP T H+E   LLVRK
Sbjct: 414 NPATLARDLKVLQEGGYYTVE-IQPVDMFPQTMHVEAVALLVRK 456


>gi|238758179|ref|ZP_04619358.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia aldovae ATCC
           35236]
 gi|238703509|gb|EEP96047.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia aldovae ATCC
           35236]
          Length = 425

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 27/190 (14%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    +EW+          +L+L+CG GNF+L LAR    V+ VE    
Sbjct: 251 FIQVNDVVNQQMVAQVIEWLEVEP---HERVLDLFCGMGNFTLPLARRARNVVGVEGVAA 307

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V   +YN   N + NV                    N   DI    +    F  + +DP
Sbjct: 308 LVANGQYNALTNGLANVSFFHE---------------NLESDISRQPWAAQGFDKVLLDP 352

Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357
            R+G       +V+  P  ++Y+SCNP +L RD  + L+  + + ++ + D FP+T H+E
Sbjct: 353 ARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLE 412

Query: 358 CGVLLVRKPS 367
              L +++P 
Sbjct: 413 SMALFMQEPG 422


>gi|300172822|ref|YP_003771987.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887200|emb|CBL91168.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
          Length = 464

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 21/187 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N      +  + LAA K G++    +++ Y G G  +L +A    ++  VE+ +
Sbjct: 289 NSFYQVNPQTTATL--YTLAAEKAGLKKTDIVVDAYSGIGTITLSIADKVKKIYGVEVVE 346

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +VE A  N   NH+ NV  V   + E  Q ++   +            +   +FVDPPR
Sbjct: 347 TAVEDAEKNAKNNHIENVSFVTADAPE--QMVKWAED----------GLKPNVVFVDPPR 394

Query: 302 SGLDDATVGMVQAY-PH-ILYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYTRHME 357
            GL    +  V A  P   +YISCNP +L RD + IL+    I+  +   DQFP T H+E
Sbjct: 395 KGLTAELIFAVSAMKPETFVYISCNPATLARDAVQILAEGFKIDGAVQPIDQFPQTTHVE 454

Query: 358 CGVLLVR 364
              +  R
Sbjct: 455 SITVFKR 461


>gi|283768881|ref|ZP_06341792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
 gi|283104667|gb|EFC06040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
          Length = 386

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 21/151 (13%)

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL+LARH   V+ +E+   +V  A  N   N + NV        +F Q       
Sbjct: 239 GTGTISLLLARHVQSVIGIELNPQAVFDANENKKVNQIQNV--------QFLQG------ 284

Query: 279 FNRLKDIDIHSYRFKT--IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
             R++++ I  YR +   +F+DPPRSG+    +  +     P I+YISC+P++  RD+ I
Sbjct: 285 --RVEEV-IPRYRIQADVLFLDPPRSGMGPCFMTYLDQLKIPKIVYISCDPNTQARDIQI 341

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L + ++I      D FP T+++E  ++L RK
Sbjct: 342 LKSHYSITVSQGVDMFPQTKNIENILVLERK 372


>gi|325684651|gb|EGD26806.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 451

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           Y+D+++      L +     SF Q N+     + +  +      + DL+ + Y G G   
Sbjct: 261 YIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTIG 316

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E        
Sbjct: 317 LSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE-------- 368

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341
                 +   IFVDPPR GL    +   V+  P  ++YISCNP +L RD+ +L    +T 
Sbjct: 369 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYTT 424

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + ++  D FP T H+E   +L R
Sbjct: 425 DLVSPVDMFPQTPHVESVTVLER 447


>gi|18977199|ref|NP_578556.1| putative RNA methyltransferase [Pyrococcus furiosus DSM 3638]
 gi|50401623|sp|Q8U2K7|Y827_PYRFU RecName: Full=Uncharacterized RNA methyltransferase PF0827
 gi|18892856|gb|AAL80951.1| putative RNA methyltransferase [Pyrococcus furiosus DSM 3638]
          Length = 409

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 24/177 (13%)

Query: 195 NVHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           N + L  +L A +G      +L+LY G G FSL L +    V+ VEI K +VE A+ +  
Sbjct: 253 NSYALPLLLKAVEGFLDGSKVLDLYSGIGTFSLYLTKKGFNVVGVEINKTAVEVAKLSAE 312

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGM 311
            N +N          EF +A R E E       +I  Y    + +DPPR GL + A V  
Sbjct: 313 LNSLN---------VEF-KAKRAEEE-------NIEGY--DALILDPPRKGLGEFAGVVE 353

Query: 312 VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +   +++Y+SCNP     D  + LS ++ +E   L D FP+T H+E  V+ +RK S
Sbjct: 354 KKGPENVVYVSCNPKRFILDFKNYLSRSYKVEDAILIDMFPHTPHVEA-VIKLRKYS 409


>gi|149374703|ref|ZP_01892477.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola
           DG893]
 gi|149361406|gb|EDM49856.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola
           DG893]
          Length = 429

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           FTQ N  IN +M+    EW L    G +  +L+L+CG GNF+L LAR   +V+ VE    
Sbjct: 258 FTQVNVDINRNMVHRAVEW-LDIQPGER--VLDLFCGLGNFTLPLARRAGQVVGVEGDDA 314

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            V   R N   N ++NV         +FT        F++             I +DPPR
Sbjct: 315 MVVRGRENAELNGLSNVAFHGADLHADFTAQPWAAEGFDK-------------ILIDPPR 361

Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           SG  +    +       I+Y+SCNP +L RD  ++    + + R  + D FP+T H+E  
Sbjct: 362 SGAQEVCEYLTAFGAKRIVYVSCNPATLARDAGVMVRNGYRLVRAGVMDMFPHTTHVESM 421

Query: 360 VLLVR 364
            +  R
Sbjct: 422 AMFER 426


>gi|26988387|ref|NP_743812.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida
           KT2440]
 gi|37088377|sp|Q88MB9|RUMA_PSEPK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|24983141|gb|AAN67276.1|AE016354_3 RNA methyltransferase, TrmA family [Pseudomonas putida KT2440]
          Length = 452

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             F Q NA +N  M+E  LA     Q D  +L+L+CG GNF+L LAR    V+AVE  + 
Sbjct: 281 GDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFALPLARQAREVVAVEGVQA 339

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V+      A    NNV   R    + +Q          L      +  F  + +DPPR 
Sbjct: 340 MVD---RAAANARNNNVHNARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRD 387

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP T H+E   
Sbjct: 388 GAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMA 447

Query: 361 LL 362
           L 
Sbjct: 448 LF 449


>gi|311033023|ref|ZP_07711113.1| YefA [Bacillus sp. m3-13]
          Length = 455

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++     
Sbjct: 312 VIDAYCGIGTISLFLAQKAKKVFGVEIVPEAIEDAKRNAELNEITNAEFAVGEAEVVIPK 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330
             +E       D+         + VDPPR G D++ +  + +  P  ++Y+SCNP +L R
Sbjct: 372 WYKE---GNTADV---------LVVDPPRKGCDESLLKTILEMKPKKVVYVSCNPATLAR 419

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L      T+E +   D FP+T H+EC   LV K
Sbjct: 420 DLRVLEDGGYKTVE-VQPVDMFPHTVHVECVSHLVLK 455


>gi|240146223|ref|ZP_04744824.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
 gi|257201634|gb|EEU99918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
          Length = 561

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + +L+    +V+ VEI + +V AAR N A N + N + +          
Sbjct: 328 VFDLYSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNCEFIAG-------- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                  + LK ID    +   I +DPPR G+    +  +  Y  P ++YISC P SL R
Sbjct: 380 -------DVLKVIDKIEEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMVYISCKPTSLAR 432

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL +L    + ++++   D FP T ++E  VLL +
Sbjct: 433 DLEVLQARGYKVKKVQCVDMFPSTGNVETVVLLSK 467


>gi|167750197|ref|ZP_02422324.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702]
 gi|167656759|gb|EDS00889.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702]
          Length = 493

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 16/160 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G   L +AR   +++ VEI   ++E A+ N  AN + N + +   + E  + 
Sbjct: 305 VLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARI 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           +               + R   I VDPPR G        + A+  P I+ +SCN  +  R
Sbjct: 365 LHS------------RNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAAR 412

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKPSG 368
           D +  +   ++ ++    D F  T H+E  VLL  +KP G
Sbjct: 413 DCACFAELGYSTDKCVAVDMFSGTNHVETVVLLSHKKPDG 452


>gi|89075082|ref|ZP_01161523.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34]
 gi|89049169|gb|EAR54734.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34]
          Length = 440

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 86/181 (47%), Gaps = 15/181 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +NV M+E  +       Q  +L+L+CG GNFSL LAR    V+ VE     V 
Sbjct: 271 FIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVA 330

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N AAN + N    + +  E    +   +E            +F  I +DP R+G  
Sbjct: 331 RATTNAAANGLGNATFYQANLDEDATKLVWAQE------------QFDKILLDPARAGAA 378

Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363
                +V   P  ++Y+SCNP +L RD   +L   + + RL + D FP+T H+E   L V
Sbjct: 379 GVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDMFPHTGHLESMALFV 438

Query: 364 R 364
           +
Sbjct: 439 K 439


>gi|303235612|ref|ZP_07322219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens
           FB035-09AN]
 gi|302484059|gb|EFL47047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens
           FB035-09AN]
          Length = 474

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 16/189 (8%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVL 235
           L ++    SF Q N     H+   V  A  G+ G  L  +LY G G  +  +A+   +V+
Sbjct: 295 LKFKVGPKSFYQTNTDQAYHLYS-VARAFAGLTGKELVYDLYTGTGTIANFVAKQAKQVV 353

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E    ++E A+ N   N + N        K+               D      R   I
Sbjct: 354 GIEYVPEAIEDAKINSEINEIGNTLFYAGDMKDILT-----------DDFVKQHGRPDVI 402

Query: 296 FVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
             DPPR+G+ +  + ++ +A+P  I+Y+SCNP +  RDL++LS  + +  +   D FP+T
Sbjct: 403 ITDPPRAGMHNDVIDVILKAHPKRIVYVSCNPATQARDLALLSPDYRVVAVQPVDMFPHT 462

Query: 354 RHMECGVLL 362
            H+E  VLL
Sbjct: 463 PHVENVVLL 471


>gi|300361143|ref|ZP_07057320.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri
           JV-V03]
 gi|300353762|gb|EFJ69633.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri
           JV-V03]
          Length = 448

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ KP+V+ A  N   N + N + V   ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGMEVIKPAVDDANANAKLNGIMNAEYVVGKAEEVMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E              +   IFVDPPR GL    V   V+  P  I+YISCNP ++ R
Sbjct: 365 WAKE------------GLKTDVIFVDPPRKGLTPEFVDAAVETDPKKIVYISCNPATMVR 412

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +     +    +   D FP T H+E   +L +K
Sbjct: 413 DLQLFREQGYDFNEIDPVDMFPQTPHVEAVTVLEKK 448


>gi|167748614|ref|ZP_02420741.1| hypothetical protein ANACAC_03387 [Anaerostipes caccae DSM 14662]
 gi|167651928|gb|EDR96057.1| hypothetical protein ANACAC_03387 [Anaerostipes caccae DSM 14662]
          Length = 543

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 18/161 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + +LA    +V+ VEI   +VEAAR N   N ++N         EF   
Sbjct: 311 IFDLYSGTGTIAQMLAPVAKKVVGVEIVGEAVEAARENAGLNGLDNC--------EFIAG 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                  + LK ID    +   I +DPPR G+    +  +  +    ++YISC P SL R
Sbjct: 363 -------DVLKVIDELEDKPDFIVLDPPRDGIHPKAIQKIIDFGVEKMVYISCKPTSLAR 415

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           DL I     + +ER    D FP T H+E   LL +  S  H
Sbjct: 416 DLEIFREAGYEVERGGCVDMFPSTVHVEVVCLLSKLKSDKH 456


>gi|227114811|ref|ZP_03828467.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 449

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 19/199 (9%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231
           VAG TL +      F Q N  +N  M+   L       Q  +L+L+CG GNF+L LA+  
Sbjct: 262 VAGLTLAFS--PRDFIQVNDAVNQQMVAQALTWLDVQPQDRILDLFCGMGNFTLPLAQRA 319

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290
             V+ VE     VE  R N   N ++NV     +   + TQ     + F++         
Sbjct: 320 ASVVGVEGVTALVEKGRENAQRNGLSNVTFFHQNLEDDVTQQPWAAQGFDK--------- 370

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFD 348
               I +DP R+G       + +  P  ++Y+SCN  +L RD  + L+  + +  +A+ D
Sbjct: 371 ----ILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLD 426

Query: 349 QFPYTRHMECGVLLVRKPS 367
            FP+T H+E   L +   S
Sbjct: 427 MFPHTGHLESMALFLHDTS 445


>gi|313889955|ref|ZP_07823593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121671|gb|EFR44772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 451

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 156/386 (40%), Gaps = 54/386 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  FQ    + F         EP  YR + +F     G  ++  +
Sbjct: 90  YPKQLDFKDDLIRQSLKKFQPQGFENFPIKHTIGMVEPWRYRAKLQFQTRSFGGKVHAGL 149

Query: 63  FDQQTKERMRIDYFM----PGSLLINALM---------------IEMMATIRLEPLLRAK 103
           F + +   + I+  +        +IN ++               I  + T+ +     + 
Sbjct: 150 FAEGSHHLISIENCLVQDSTTQTIINGIVSLLEGHKIPIYNERRIAGLRTVMIRKGQSSG 209

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
             Q+ ++TS+ +  +  L+   + + +  +  A+    +  +  Y         +T+I  
Sbjct: 210 QVQVIFVTSK-ELHLAPLVKELVTNFEEIKTVAVNYNRSKTSSLY-------GEQTEIIW 261

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            +D +DE +      L  R    +F Q N      +   V+ A +  + D +++ YCG G
Sbjct: 262 GKDTIDEDVLDYSFALSPR----AFYQLNPQQTETLYSEVVKALEVSEEDQIIDAYCGVG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A+H   +  ++I   ++  A+ N  A    N       +++      +E     
Sbjct: 318 TIGFAFAKHVKGIRGMDIIPEAIADAKKNAKAMGFTNTYYETGKAEDLIPKWYQE----- 372

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLD+  +  +  +    ++Y+SCN  +L RDL  L+  +
Sbjct: 373 -------GYRADAIIVDPPRTGLDEKLLETIIKFQPAKMVYVSCNTSTLARDLVTLAKVY 425

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            IE +   D FP+T   E  V L +K
Sbjct: 426 QIEYIQSVDMFPHTARTEAVVKLRKK 451


>gi|255730431|ref|XP_002550140.1| endo-exonuclease NUCR [Candida tropicalis MYA-3404]
 gi|240132097|gb|EER31655.1| endo-exonuclease NUCR [Candida tropicalis MYA-3404]
          Length = 577

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 21/161 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  +    +V+ VEI+  S++ A+ N   N+++N K +   ++E    
Sbjct: 429 LVDAYCGSGLFSITCSSKVSKVIGVEISAESIKFAKINAIKNNISNAKFIVGKAEEI--- 485

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                       ID  + +  ++ +DPPR G DD  +  +  Y    I+YISCN  S  R
Sbjct: 486 ---------FASIDTPNDQ-TSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHSQAR 535

Query: 331 DLS-ILSTT-----HTIERLALFDQFPYTRHMECGVLLVRK 365
           D+   ++ T     + +E +  FD FP T H+E   +L  K
Sbjct: 536 DIEWFINNTGNGHKYQVESIKGFDFFPQTHHVESVAVLTLK 576


>gi|2196421|dbj|BAA20428.1| unnamed protein product [Synechocystis sp. PCC 6803]
          Length = 463

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 30/214 (14%)

Query: 163 DRDYVDERLTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
           +R + DE + +AGR +   +          N+F Q N+G    +L   L     +QG   
Sbjct: 261 NRIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGA-AELLLTRLQQALNLQGAEL 319

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G F+L LAR   + +A+E+ + SV   + N   N + NV  +  + +     
Sbjct: 320 LVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPT 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           +      + + D+         + +DPPR G     +  +  Q    I YISC P +L R
Sbjct: 380 L------SEIPDV---------LLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLAR 424

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362
           DL  L     + I  +   D FP T H+EC V+L
Sbjct: 425 DLKFLCAEGFYGITWVQGCDFFPQTAHVECAVIL 458


>gi|288800143|ref|ZP_06405602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333391|gb|EFC71870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 473

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 24/203 (11%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G   IY  +E+        SF Q N     H+ + V     G+ G+ L  +LY G G  +
Sbjct: 282 GNNYIYELMEDLKFKVGPKSFYQTNTEQAYHLYD-VTRKFAGLTGNELVYDLYTGTGTIA 340

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
             +A    +V+ +E    +++ A+ N   N++NN        K+        +EF     
Sbjct: 341 NFVAPKAKKVIGIEYVPEAIKDAKVNSQINNINNTLFYAGDMKDIL-----SQEF----- 390

Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
           I+ H  R + I  DPPR+G+  D    ++ A P+ I+Y+SCNP +  RDL+  +  + + 
Sbjct: 391 IEEHG-RPEVIITDPPRAGMHPDVIQTILSAAPNRIVYVSCNPATQARDLADFNKDYKVT 449

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T H+E  VLL R+
Sbjct: 450 AVQPVDMFPHTPHVENVVLLERR 472


>gi|91792550|ref|YP_562201.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella
           denitrificans OS217]
 gi|123166314|sp|Q12PZ8|RUMA_SHEDO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|91714552|gb|ABE54478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella
           denitrificans OS217]
          Length = 468

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 21/186 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA---RHFD--RVLAVE 238
            +F Q NA +N  M+E  +       G+ +L+L+CG GNFSL LA   ++ D   V+ VE
Sbjct: 292 GNFVQVNAEVNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVE 351

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                V+ AR N   N++ N+        + +  +  E+   ++            + +D
Sbjct: 352 GVPEMVQQARENAKRNNLANLSFYHA---DLSADLSNEKWLGKID----------KLLLD 398

Query: 299 PPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356
           P R+G  ++   + +  P  ++Y+SCNP SL RD S+ LS  + +++L++ D FP T H+
Sbjct: 399 PARAGAFESLQWLQKMKPKKVVYVSCNPASLARDSSVLLSQGYQLKQLSMIDMFPQTHHI 458

Query: 357 ECGVLL 362
           E   L 
Sbjct: 459 EAMALF 464


>gi|307701067|ref|ZP_07638092.1| TRAM domain protein [Mobiluncus mulieris FB024-16]
 gi|307614062|gb|EFN93306.1| TRAM domain protein [Mobiluncus mulieris FB024-16]
          Length = 416

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 14/205 (6%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
           V E + V  R   YR   +SF Q +      ++E +LA    I G ++LELY G+G FS+
Sbjct: 219 VREVVRVGAREHTYRIFASSFWQTDYRAPAVLVEALLAGVGDISGFEVLELYAGSGLFSV 278

Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            LA       R+  VE  + +V++A YN+      + +    S  E      R   F R 
Sbjct: 279 FLAEAIGDSGRLTTVEGDRVAVKSAGYNLQHAGFEDTR----SRVERAAVSAR---FLRG 331

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTH 339
            D      R   +  DPPRSGL     G +       +  ISC+P S  RDL  L    +
Sbjct: 332 LDFGQRFMRGTLVVADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGY 391

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            ++   +FD FPYT+H+E   +L R
Sbjct: 392 RLQSFRVFDLFPYTQHVEVLSVLGR 416


>gi|253583643|ref|ZP_04860841.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium varium ATCC
           27725]
 gi|251834215|gb|EES62778.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium varium ATCC
           27725]
          Length = 451

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/370 (19%), Positives = 165/370 (44%), Gaps = 38/370 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y++ + E V +    M    V ++ I   +P HYR +          ++    F +++ 
Sbjct: 94  KYKKLMVEDVLKKIGKMDNISVADV-IGSEDPYHYRNKIIEPFRKSKGEIISGFFKRKSH 152

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSDQAIVTL 121
           +   ++  +  S L N ++ E+ + +  E +        +  L  +   T+  ++A++ L
Sbjct: 153 DVFEVEESILNSRLGNKIIKELKSILNREKVSVYDENEHKGILRNVMVRTNSKNEAMLVL 212

Query: 122 IYHRL-LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           I + + ++  +++  + L++ ++  K  I +     +T + L     ++ + + G   I 
Sbjct: 213 IINAVKVEKRYKDILMELKNKINEIK-SIYISLNPKRTNVALG----EKNVFIWGEKTIT 267

Query: 181 RQIEN--------SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
            +I+         SF Q N      +    +   K I+  ++++ Y G G  +++L++  
Sbjct: 268 EEIDGISFNISPLSFFQINLPQTKKLYNTAVNYFKDIENKNVVDAYSGTGTLAMILSKKA 327

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V A+E+ + +          N ++N++ +  + ++            +L ++     +
Sbjct: 328 KKVFAIELVQSATNDGIKTAKENGISNIEFINGAVED------------KLPELIKKGEK 375

Query: 292 FKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348
              I  DPPR G++++++  V       I+YISCNP +  RD  ILS   +T+E++   D
Sbjct: 376 VDAIIFDPPRKGIEESSLLKVAESNIKEIVYISCNPSTFARDAEILSREGYTLEKVQPVD 435

Query: 349 QFPYTRHMEC 358
            FP T H E 
Sbjct: 436 MFPGTAHTEV 445


>gi|225027843|ref|ZP_03717035.1| hypothetical protein EUBHAL_02103 [Eubacterium hallii DSM 3353]
 gi|224954790|gb|EEG35999.1| hypothetical protein EUBHAL_02103 [Eubacterium hallii DSM 3353]
          Length = 560

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 30/213 (14%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELY 217
           DE  T+ G+   Y  + N        SF Q N  +   +L   +    G   D L  +LY
Sbjct: 274 DETKTLYGQDYFYEYLYNMRFKISPFSFFQTNT-LGAEVLYDKVREYVGETKDKLIYDLY 332

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G  + +LA    +V+ VEI + +VEAA+ N   NH++N         EF        
Sbjct: 333 TGTGTIAQMLASVASKVVGVEIVEEAVEAAKKNAVDNHLDNC--------EFIAG----- 379

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
             + LK +D  + +   + +DPPR G+    +  +  +    ++Y+SC P SL RDL + 
Sbjct: 380 --DVLKVVDNLTKKPDILVLDPPRDGIHPKALTKIINFNVDEMVYVSCKPTSLMRDLLVF 437

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLV-RKP 366
               + ++R  L D FP T H+E  VLL  +KP
Sbjct: 438 REAGYEVKRACLVDMFPGTVHVETVVLLSQQKP 470


>gi|16329997|ref|NP_440725.1| hypothetical protein sll1967 [Synechocystis sp. PCC 6803]
 gi|50401741|sp|P73374|Y1967_SYNY3 RecName: Full=Uncharacterized RNA methyltransferase sll1967
 gi|1652483|dbj|BAA17405.1| sll1967 [Synechocystis sp. PCC 6803]
          Length = 463

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 30/214 (14%)

Query: 163 DRDYVDERLTVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
           +R + DE + +AGR +   +          N+F Q N+G    +L   L     +QG   
Sbjct: 261 NRIFGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGA-AELLLTRLQQALNLQGAEL 319

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G F+L LAR   + +A+E+ + SV   + N   N + NV  +  + +     
Sbjct: 320 LVDAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPT 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           +      + + D+         + +DPPR G     +  +  Q    I YISC P +L R
Sbjct: 380 L------SEIPDV---------LLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLAR 424

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362
           DL  L     + I  +   D FP T H+EC V+L
Sbjct: 425 DLKFLCAEGFYGITWVQGCDFFPQTAHVECAVIL 458


>gi|293375600|ref|ZP_06621874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
           PC909]
 gi|292645817|gb|EFF63853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
           PC909]
          Length = 459

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 17/163 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + + YCG G  +L LA+H  +V  VEI   ++  A  N   N   N +     
Sbjct: 307 GLTGEEIVFDAYCGIGTITLFLAQHAKKVYGVEIIPEAIADANMNAKLNGFENTEFAVGK 366

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323
           S+E   A     E   + D+         I VDPPR G D   +  M++A P  I+Y+SC
Sbjct: 367 SEEVIPAW---IEQGIVPDV---------IVVDPPRKGCDKTLLDTMLEAAPKRIVYVSC 414

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  +L RD+ IL    + +E     D FP T H+E   LL RK
Sbjct: 415 DSSTLARDVKILVDGGYQLEVAQPVDMFPQTSHVEVVALLTRK 457


>gi|282880269|ref|ZP_06288985.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305864|gb|EFA97908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis
           CRIS 5C-B1]
          Length = 472

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLA 236
           L ++    SF Q N     H+ E      +    +L+ +LY G G  +  +ARH  +V+ 
Sbjct: 293 LQFKVAAKSFYQTNTQQAFHLYEVARQLAQLTGKELVYDLYTGTGTIANFVARHAQQVIG 352

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTI 295
           +E  + ++  A+ N   N + N        K+             L D  +  + +   I
Sbjct: 353 IEYVEDAIADAKANSKCNGIENTLFYAGDMKDI------------LTDEFVKQHGKPDVI 400

Query: 296 FVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
             DPPR+G+  D    +++A P  I+Y+SCNP +  RDL +L+  + +E +   D FP+T
Sbjct: 401 ITDPPRAGMHPDVIQTILRAAPKRIVYVSCNPATQARDLEVLNEQYRVEEVQPVDMFPHT 460

Query: 354 RHMECGVLL 362
            H+E  VLL
Sbjct: 461 PHVENVVLL 469


>gi|258510692|ref|YP_003184126.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477418|gb|ACV57737.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 449

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 88/191 (46%), Gaps = 16/191 (8%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLA 236
           L  R    SF Q  A +   M   V+ A +  + D+ ++ YCG G  +L+LA H  R + 
Sbjct: 270 LRVRWSPRSFLQVQADMAERMYHHVVRAVEVRETDVVIDAYCGIGAMTLLLASHAARAVG 329

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  + ++  AR N   N V N + V           R ER   R  +      R   + 
Sbjct: 330 VEEVEDAIADARANAKLNRVRNAEFV---------VDRVERWLPRFVEA---GNRADVLV 377

Query: 297 VDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
            DPPR G+D A +          ++Y+SCNP +L RDL +L+     +  +  FD FP T
Sbjct: 378 FDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLLAARGFYVTDIQPFDMFPQT 437

Query: 354 RHMECGVLLVR 364
            H+EC V + R
Sbjct: 438 SHVECVVTMRR 448


>gi|308798929|ref|XP_003074244.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri]
 gi|116000416|emb|CAL50096.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri]
          Length = 1009

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 135/300 (45%), Gaps = 36/300 (12%)

Query: 85   ALMIEMMATIRLEPLLRAKLFQ-IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
            +LM+++  T   + L    L + I  +T    +A+ ++++  +  +A       LR A  
Sbjct: 723  SLMVDLATTASEKELTSGALAELIADITKH--EAVTSVVHTTVPAEA------ELRRAGV 774

Query: 144  ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
             R  +    G+   +K  +   Y + ++      + +     SF Q N      ++  V+
Sbjct: 775  GRSAKFVKGGKKPISKRKVVTLYGENKIVETLHGVKFELSSASFFQTNTEQAARLVREVV 834

Query: 204  AATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            A   G  GD    +L+L+CG G   L +A +  RV+  E+   +VE AR N   N + N 
Sbjct: 835  AGC-GFAGDRSETVLDLFCGVGTMGLSVASNAKRVIGWEVVPEAVEDARRNAEINGITNA 893

Query: 259  ----VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                V + R++  + T+A+    + + L   DI       +  DP R G+D + + +++ 
Sbjct: 894  DFYRVDLSRLNPSKGTKALLTTPQGDVLPMPDI-------VITDPARPGMDASLIAILRT 946

Query: 315  YP--HILYISCNPDSLCRDLSILSTTHTIERLALF--------DQFPYTRHMECGVLLVR 364
                 I+Y+SCNP +  RDL++++      + A +        D FP+T H+E   +L R
Sbjct: 947  IGARRIVYVSCNPATQARDLALITAPSQGSQDAAYVLKLCTPVDMFPHTAHVESVAVLDR 1006


>gi|302334849|ref|YP_003800056.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084]
 gi|301318689|gb|ADK67176.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084]
          Length = 416

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 87/200 (43%), Gaps = 27/200 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD---------R 233
            SF Q N      +L  +     G++G   +L+ YCG G   +  A             R
Sbjct: 216 TSFYQTNP-RQTEVLYALAVEAAGLRGGERVLDAYCGTGTIGICAAAATRRRGAEVQDVR 274

Query: 234 VLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           V+ VE    +V  AR N  AN +  +   VR  +  F   MR        K       RF
Sbjct: 275 VIGVEQVGDAVACARRNATANGLGGSCSFVREDATAF---MR--------KAAGCGEGRF 323

Query: 293 KTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             +F+DPPR+G   A + G+    PH ++YISCNP +  RDL       + +  + L D 
Sbjct: 324 DVVFMDPPRAGSTPAFIHGVAGLAPHRVVYISCNPTTQARDLKEFQQLGYAVSTVELVDM 383

Query: 350 FPYTRHMECGVLLVRKPSGW 369
           FP+T+H+E   L+ R    W
Sbjct: 384 FPHTKHVETIALMTRNGGEW 403


>gi|254556113|ref|YP_003062530.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|254045040|gb|ACT61833.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
          Length = 457

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 18/164 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ Y G G  SL +A+H  +V  VEI   +++ AR N   N + N   V  S
Sbjct: 305 GLTGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDS 364

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISC 323
           ++   +AM + +      D+         I VDPPR GLD D      +  P  ++YISC
Sbjct: 365 AE---KAMAKWQSDGVKPDV---------IVVDPPRKGLDADFIKSAGEMAPKRVVYISC 412

Query: 324 NPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +L RD    +    H    +   DQFP T H+E   +L R+
Sbjct: 413 NPSTLVRDAQRFAEYGYHISAPVQPVDQFPQTPHIESVTVLERE 456


>gi|299820563|ref|ZP_07052453.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
 gi|299818058|gb|EFI85292.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
          Length = 457

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++E A++N A N V N          + + 
Sbjct: 315 IIDAYCGAGTIGLSLAGQVREVRGMDVIPEAIEDAKHNAALNQVTN---------SYYEV 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
            + E    +  +     ++   + +DPPR G D + +  +  Y    I+Y+SCNP +L R
Sbjct: 366 GKAETILPKWLE---EGFQADAVILDPPRVGCDQSLIRALLDYAPKQIVYVSCNPSTLAR 422

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL++ S  + I  +   D FP T H+E   ++ ++
Sbjct: 423 DLALFSKEYQINSIQPVDMFPQTAHVETVTVMQKR 457


>gi|160942249|ref|ZP_02089558.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434806|gb|EDP12573.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 118/265 (44%), Gaps = 34/265 (12%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           Q DYL  ++++ ++     +L+         +L   LH     +  + +++ T I   +D
Sbjct: 231 QRDYLGERTEEEVLAEWTKKLVGLPLDG---KLAGILHTENDSLADVVQSDATHILYGQD 287

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGN 220
           Y  E L      L +R    SF Q N+       E +    +G  GD     + +LY G 
Sbjct: 288 YFYEELL----GLRFRISPFSFFQTNS----LGAEVLYDTARGFVGDTKDRVVFDLYSGT 339

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  + +LA    +V+ VEI + +V +A+ N   N + N         EF          +
Sbjct: 340 GTIAQILAPVAKKVVGVEIVEEAVRSAQVNARLNGLENC--------EFLAG-------D 384

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
            LK ID    +   I VDPPR G+    +G +  +    I+YISC P SL RDL +L   
Sbjct: 385 VLKVIDELQDKPDLIVVDPPRDGIHPKALGKIIDFGVDRIVYISCKPTSLVRDLVVLQDR 444

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            + +E++   D FP T ++E  +++
Sbjct: 445 GYRVEKVCGVDMFPGTGNVEVVIMM 469


>gi|116513601|ref|YP_812507.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116092916|gb|ABJ58069.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125246|gb|ADY84576.1| RNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 451

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           Y+D+++      L +     SF Q N+     + +  +      + DL+ + Y G G   
Sbjct: 261 YIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTIG 316

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E        
Sbjct: 317 LSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE-------- 368

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341
                 +   IFVDPPR GL    +   V+  P  ++YISCNP +L RD+ +L    +T 
Sbjct: 369 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYTT 424

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + ++  D FP T H+E   +L R
Sbjct: 425 DLVSPVDMFPQTPHVESVTVLER 447


>gi|294056010|ref|YP_003549668.1| RNA methyltransferase, TrmA family [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615343|gb|ADE55498.1| RNA methyltransferase, TrmA family [Coraliomargarita akajimensis
           DSM 45221]
          Length = 409

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 21/195 (10%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225
           V ER+    R + ++     F Q N  I   M+++V A A+      L++ YCG+G F+L
Sbjct: 224 VSERV----RDVTFQFKAGEFFQNNPFILPKMVDYVEAEASADGARYLVDAYCGSGLFAL 279

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A+ F++V  VE++  +V  A+ N   + ++N + +           + E  FN LK  
Sbjct: 280 STAKSFEQVAGVEVSDQAVLWAQANCRISGISNARFL---------IGKAEAIFNGLK-- 328

Query: 286 DIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIE 342
                    + +DPPR G D++  + ++Q  P  ++Y+SC+P +  RD+ + +   + + 
Sbjct: 329 --FPADETALIIDPPRKGCDESFRLQLLQFRPQRLVYVSCDPATQARDVKAFVDGGYRVT 386

Query: 343 RLALFDQFPYTRHME 357
           R+  FD FP+TRH+E
Sbjct: 387 RIQPFDLFPHTRHIE 401


>gi|307566456|ref|ZP_07628890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS
           21A-A]
 gi|307344844|gb|EFN90247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS
           21A-A]
          Length = 476

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  +  +A+   +V+ +E    ++E A+ N   N++ N        K     
Sbjct: 331 VYDLYTGTGTIANFIAKKAKKVIGIEYVPEAIEDAKVNSKINNIENTLFYAGDMK----- 385

Query: 273 MRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329
                  N L D  +  + R   I  DPPR+G+    + ++ QA P  I+Y+SCNP +  
Sbjct: 386 -------NILTDRFVKEHGRPDVIITDPPRAGMHPDVINVILQARPKRIVYVSCNPATQA 438

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDLS+L+T++ I  +   D FP+T H+E  VLL
Sbjct: 439 RDLSLLNTSYKIIAVQPVDMFPHTPHVENVVLL 471


>gi|170016721|ref|YP_001727640.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20]
 gi|169803578|gb|ACA82196.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20]
          Length = 462

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 16/150 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   + +A+   +VL VE+   +V  A+ N+  NHV+N + +   +    Q 
Sbjct: 317 VIDAYSGIGTIGITVAKQVRKVLGVEVVPGAVADAQLNMRMNHVDNAEYILADAP---QQ 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
            +  +E N   D+         +FVDPPR GL +A +      A   I+Y+SCNP +L R
Sbjct: 374 FKLWQEANLQPDV---------VFVDPPRRGLTNALIKATTDMAPDRIVYVSCNPVTLVR 424

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMEC 358
           D S L     H    +   DQFP T H+E 
Sbjct: 425 DASELVQQGYHIDGPVLPVDQFPQTSHVES 454


>gi|154685168|ref|YP_001420329.1| YefA [Bacillus amyloliquefaciens FZB42]
 gi|154351019|gb|ABS73098.1| YefA [Bacillus amyloliquefaciens FZB42]
          Length = 464

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 19/155 (12%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +QG+  +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N + N +     +
Sbjct: 309 LQGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEA 368

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
           +       +E                 T+ VDPPR G D+A +  ++   P  ++Y+SCN
Sbjct: 369 ETVIPKWYKE------------GITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCN 416

Query: 325 PDSLCRDLSILSTT--HTIERLALFDQFPYTRHME 357
           P +L RDL +L      T+E +   D FP+T H+E
Sbjct: 417 PGTLARDLRMLEDGGYQTLE-VQPVDMFPHTNHVE 450


>gi|126175348|ref|YP_001051497.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS155]
 gi|226725386|sp|A3D7B5|RUMA_SHEB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|125998553|gb|ABN62628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella baltica
           OS155]
          Length = 450

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 26/186 (13%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q N  IN  M    ++W+  A   +   +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 279 GNFVQVNGQINKAMVAQAMDWLAPA---LDERILDLFCGMGNFSLPLAKMGADVIGVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298
              V  AR N  AN+++ +                    +   D+ +  +  +   + +D
Sbjct: 336 AEMVTQARVNAKANNLDKLTFFHG---------------DLSADLSLEPWMGKIDKLLLD 380

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356
           P R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + +++L L D FP T H+
Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHI 440

Query: 357 ECGVLL 362
           E   L 
Sbjct: 441 EAMALF 446


>gi|325274862|ref|ZP_08140877.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas sp. TJI-51]
 gi|324100010|gb|EGB97841.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas sp. TJI-51]
          Length = 452

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             F Q NA +N  M+E  LA     Q D  +L+L+CG GNF+L LAR    V+AVE  + 
Sbjct: 281 GDFVQVNAQVNTAMIEQALAWLA-PQADERVLDLFCGLGNFALPLARQAREVVAVEGVQA 339

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V+      A    NNV   R    + +Q          L      +  F  + +DPPR 
Sbjct: 340 MVD---RAAANARNNNVHNARFFQADLSQP---------LAGTGWAAEGFSAVLLDPPRD 387

Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGV 360
           G  +   G+ +     ++Y+SCNP +L RD  +L+   + + R  + D FP T H+E   
Sbjct: 388 GAYEVVQGIARLKASRLVYVSCNPATLARDAQVLAGQGYRLTRAGILDMFPQTAHVEAMA 447

Query: 361 LL 362
           L 
Sbjct: 448 LF 449


>gi|262369859|ref|ZP_06063186.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           johnsonii SH046]
 gi|262314898|gb|EEY95938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           johnsonii SH046]
          Length = 462

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 24/182 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIA 240
           + FTQ N+ IN  M++         QG+ +L+L+CG GNFSL LAR      +V+ VE +
Sbjct: 283 HDFTQVNSTINPQMVKLACDLLDLKQGERVLDLFCGLGNFSLPLARCVGETGQVVGVEGS 342

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFV 297
           +  V+    N   N +  +K        F+Q +         KD   HS+    F  + +
Sbjct: 343 EEMVQRGAENAERNALGQLKF-------FSQDL--------TKDFSHHSWANQGFDALLI 387

Query: 298 DPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           DPPR+G ++    M       I+Y+SCNP +L RD  +L    + + +  + D F +T H
Sbjct: 388 DPPRAGAEEIMHYMPNFGAKRIVYVSCNPATLARDAGLLVQQGYRLVKAGVMDMFTHTGH 447

Query: 356 ME 357
           +E
Sbjct: 448 VE 449


>gi|315645532|ref|ZP_07898656.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
           V453]
 gi|315279010|gb|EFU42320.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
           V453]
          Length = 532

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N    V + E V AA  G+ G   +++ YCG G   L LA +   V  +E    +
Sbjct: 358 AFFQLNPQQTVKLYESVRAAA-GLTGKETVIDAYCGTGTIGLWLAPYAKEVRGIETIPEA 416

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A+ N   N   N       ++E      +E              +   I  DPPR+G
Sbjct: 417 VEDAKANAQRNGRANASFHVGQAEELLPRWVKE------------GMKPDVIIADPPRTG 464

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360
           LD   +  V +  P   +Y+SCNP +L +D  + L   + +E +   D FP T H+EC V
Sbjct: 465 LDSRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDGGYELEWVQPVDMFPQTSHVECTV 524

Query: 361 LL 362
           LL
Sbjct: 525 LL 526


>gi|302338159|ref|YP_003803365.1| (uracil-5)-methyltransferase [Spirochaeta smaragdinae DSM 11293]
 gi|301635344|gb|ADK80771.1| (Uracil-5)-methyltransferase [Spirochaeta smaragdinae DSM 11293]
          Length = 391

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 15/186 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            F Q N G+N  +   +       +  +L+LYCG+GN SL LAR   RV   +IA  S++
Sbjct: 213 GFRQANEGVNKLLQNEIARFITQSEARVLDLYCGDGNLSLPLARQGCRVRGFDIATSSIK 272

Query: 246 AAR--YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            A   +   +   + V   R+ + E  +AM++      ++  D  + R   I +DPPRSG
Sbjct: 273 QANRLWRERSTDTHQVSYQRLDAMEAVKAMQQ----GAIRPFD--AERPDVILLDPPRSG 326

Query: 304 LDDATVGM----VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMEC 358
           +   + GM          ILY+SC+P +L RDL S  +  + +  +   D FP T H+E 
Sbjct: 327 V--GSEGMQALCTLKAQRILYLSCDPATLSRDLKSASAAGYHLLTVRAADMFPQTYHLES 384

Query: 359 GVLLVR 364
             +L R
Sbjct: 385 FAVLER 390


>gi|255657345|ref|ZP_05402754.1| putative RNA methyltransferase [Clostridium difficile QCD-23m63]
          Length = 453

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    
Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNMHNAEFYVGKAEEIVPK 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M RE +   +            + VDPPR G D+  +  +V   P  I+Y+SCNP +L R
Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMSPERIVYVSCNPSTLAR 416

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364
           DL  L+  H  + +     D FP++ H+E   L+ R
Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETIALIQR 451


>gi|104773610|ref|YP_618590.1| methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103422691|emb|CAI97304.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 451

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 20/203 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           Y+D+++      L +     SF Q N+     + +  +      + DL+ + Y G G   
Sbjct: 261 YIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTIG 316

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E        
Sbjct: 317 LSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE-------- 368

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341
                 +   IFVDPPR GL    +   V+  P  ++YISCNP +L RD+ +L    +T 
Sbjct: 369 ----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYTT 424

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + ++  D FP T H+E   +L R
Sbjct: 425 DLVSPVDMFPQTPHVESVTVLER 447


>gi|14591077|ref|NP_143152.1| hypothetical protein PH1259 [Pyrococcus horikoshii OT3]
 gi|50401322|sp|O58994|Y1259_PYRHO RecName: Full=Uncharacterized RNA methyltransferase PH1259
 gi|3257678|dbj|BAA30361.1| 412aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 412

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 21/155 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LY G G  SL LA+    V  VE+   SVE A+ +   N +N           F Q 
Sbjct: 277 VLDLYSGIGTLSLYLAKRGFEVTGVEVNGTSVEMAKRSAEINSINAT---------FIQG 327

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRD 331
                   + +D ++  Y  +T+ VDPPR GL + +  +V+  P+ L Y+SCNP     D
Sbjct: 328 --------KAEDAELEGY--ETLIVDPPRKGLKEFSRRIVKKGPNTLIYVSCNPLRFILD 377

Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + LS  + ++   L D FP+T H+E  + LVR+
Sbjct: 378 YRNYLSEAYKVDDALLIDMFPHTPHIEAVIKLVRR 412


>gi|113478164|ref|YP_724225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Trichodesmium
           erythraeum IMS101]
 gi|110169212|gb|ABG53752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Trichodesmium
           erythraeum IMS101]
          Length = 485

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 107/236 (45%), Gaps = 50/236 (21%)

Query: 160 ICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELY 217
           +C+  R YV E+ +     L ++   N+F Q N      ++E V+        +++ + Y
Sbjct: 268 VCVAGRFYVREKFS----GLEFQLTPNTFFQVNTKTTEKLVEIVIQELALSNSEIIVDAY 323

Query: 218 CGNGNFSLVLARHFDRV-------------------------LAVEIAKPSVEAARYNIA 252
           CG G F L LA++  +V                         + +E+   ++E A++N  
Sbjct: 324 CGVGTFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVIGLEVQGVAIEQAKFNAK 383

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GM 311
            NH+ NV         F +  + ER   +L+       +   + +DPPR G D + +  +
Sbjct: 384 INHLTNV--------HFYEG-KVERLLPQLE------VKPDIVLLDPPRKGCDRSVLETL 428

Query: 312 VQAYPH-ILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           ++  P  I+YISC P +L RDL  L +T  + + ++   D FP T H+EC   L++
Sbjct: 429 LEILPERIVYISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLIK 484


>gi|76787486|ref|YP_329132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae A909]
 gi|77406057|ref|ZP_00783133.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
 gi|76562543|gb|ABA45127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae A909]
 gi|77175337|gb|EAO78130.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
          Length = 451

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 167/387 (43%), Gaps = 54/387 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHI 61
           QY++QL  K D +RQ ++ F+     N +I ++    EP HYR + +F +   G ++   
Sbjct: 88  QYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMPEPEHYRAKLQFQVRSFGGNVKAG 147

Query: 62  MFDQQTKERMRI-DYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           ++ Q T   + I D  +  SL   +IN +  E++   +L      K+  +  +  +  QA
Sbjct: 148 LYAQGTHRLIDIKDCLVQDSLTQEMINRVA-ELLGKYKLPIYNERKIAGVRTVMIRRAQA 206

Query: 118 I--VTLIY---HRL-LDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRD 165
              V LI+    RL  DD   E    +R+    +   + +            T++   ++
Sbjct: 207 SGEVQLIFITSKRLDFDDVVIEL---VREFPELKTVAVNINASKTSDIYGQITEVIWGQE 263

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
            ++E +   G +L  R    +F Q N     +   E V A       DL++ YCG G   
Sbjct: 264 SINEEVLDYGFSLSPR----AFYQLNPKQTQILYSEAVKALDVKDDDDLIDAYCGVGTIG 319

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     V  ++I   +++ A+ N  A H+            FT       E  + +D
Sbjct: 320 LAFAGKVKSVRGMDIIPEAIQDAKEN--ALHMG-----------FTNT---HYEAGKAED 363

Query: 285 ID----IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338
           I        +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+  
Sbjct: 364 IIPRWYSEGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L RK
Sbjct: 424 YHVHYIQSVDMFPHTARTEAVVKLQRK 450


>gi|94988943|ref|YP_597044.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94992837|ref|YP_600936.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94542451|gb|ABF32500.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94546345|gb|ABF36392.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 451

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 156/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174
           Q  + ++  + +  A      R    L     Q++ +   +N++K      Y DE   + 
Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNRSK--SSEIYGDETEILW 260

Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           G+  I+ ++          +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 261 GQEAIHEEVLDYGFALSPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  A   +N          + +A + E    +    
Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|332867187|ref|ZP_08437452.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6013113]
 gi|332734126|gb|EGJ65258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6013113]
          Length = 463

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 32/191 (16%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKP 242
           FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR      +V+ VE ++ 
Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+ A  N   N++       + +  F+Q +          D   HS+    F  + +DP
Sbjct: 346 MVQRATDNAKRNNL-------VQASFFSQDL--------TIDFSHHSWANQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           PR+G  +    ++Q  P+     I+Y+SCNP +L RD  +L    + +++ A+ D F +T
Sbjct: 391 PRAGAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHT 446

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 447 EHVESIALFEK 457


>gi|323144161|ref|ZP_08078797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei
           YIT 12066]
 gi|322416069|gb|EFY06767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei
           YIT 12066]
          Length = 447

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 15/175 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F Q N  +N  +++ VL A K   G  +L+L+CG GNF+L LA+    VL ++I    +
Sbjct: 278 AFVQVNKEVNKDLIKLVLDAVKPHPGMKVLDLFCGLGNFTLPLAKEGAEVLGIDIVSSMI 337

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N   N ++N K               E EF + +   +   ++  + +DP R G 
Sbjct: 338 KDAQKNAELNDLHNAKFA---------VADLEDEFEKQQWAKV---KYDAVVLDPGRMGA 385

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
             A + + +   P I+ ISCNP +  RD+  ++ + + I      D FP T H+E
Sbjct: 386 KRAALFVSKLKIPKIVMISCNPLAASRDIRELIKSGYKITAWGALDMFPRTSHIE 440


>gi|332974302|gb|EGK11234.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437]
          Length = 465

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 19/158 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   RVL VE    +VE AR+N   N +++       ++E    
Sbjct: 314 IIDAYCGIGTIGLYLAKEAARVLGVESIPQAVEDARHNAELNGIDHASFEAGPAEEVMPR 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDSL 328
             RE              R   + VDPPR G    L DA V M  +   ++Y+SCNP +L
Sbjct: 374 WARE------------GIRPDVMIVDPPRKGCAPELLDAAVRM--SPDRLVYVSCNPATL 419

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
            RD + L    +T  ++   D FP+T H+EC  +  R+
Sbjct: 420 ARDAAYLKERGYTNCQVQPVDMFPHTSHVECVTVFRRE 457


>gi|255308421|ref|ZP_05352592.1| putative RNA methyltransferase [Clostridium difficile ATCC 43255]
          Length = 452

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    
Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPK 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M RE +   +            + VDPPR G D+  +  +V   P  I+Y+SCNP +L R
Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLAR 416

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365
           DL  L+  H  + +     D FP++ H+E    ++++
Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETVAKIIKQ 452


>gi|118586769|ref|ZP_01544205.1| RNA methyltransferase, TrmA family [Oenococcus oeni ATCC BAA-1163]
 gi|118432762|gb|EAV39492.1| RNA methyltransferase, TrmA family [Oenococcus oeni ATCC BAA-1163]
          Length = 458

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 16/150 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +AR   +V+ VE+  P+VE A+ N+ AN + N + +   + E    
Sbjct: 314 VIDAYSGIGTIGLSIARQVRKVIGVEVVAPAVEDAKKNMLANRIENAEYIAADAAE---- 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCR 330
                +F +     +   +   +FVDPPR GL +  +    V A    +YISCNP +L R
Sbjct: 370 -----QFIKWAAAGV---KPDVVFVDPPRKGLTNDLIQSLGVMAPLKFVYISCNPATLAR 421

Query: 331 DLSILST-THTIERLAL-FDQFPYTRHMEC 358
           D  ++    + I +  L  DQFP T H+E 
Sbjct: 422 DAVLIKEQGYRISKAVLPIDQFPQTMHVES 451


>gi|37524901|ref|NP_928245.1| 23S rRNA 5-methyluridine methyltransferase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|50401496|sp|Q7N839|RUMA_PHOLL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|36784327|emb|CAE13204.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 438

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 21/184 (11%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    +EW+         ++L+L+CG GNF+L + R    V+ VE    
Sbjct: 270 FIQVNDQVNQQMVAQAIEWLDLQPND---NVLDLFCGMGNFTLPIGRIVQSVVGVEGVAT 326

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V   +YN   N+++N+        E  +A    + + +L         F  + +DP R+
Sbjct: 327 LVANGQYNAKINNLDNISFCH----ENLEADIHHQPWAKLG--------FNKVLLDPARA 374

Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360
           G       +V+  P  ++Y+SCNP +L RD  I L   + I  + + D FP+T H+E   
Sbjct: 375 GAVGVMSHIVELVPEKVVYVSCNPTTLARDSKILLEAGYQIISVRMLDMFPHTGHLESMA 434

Query: 361 LLVR 364
           L  R
Sbjct: 435 LFSR 438


>gi|295397699|ref|ZP_06807772.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
           11563]
 gi|294974068|gb|EFG49822.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
           11563]
          Length = 469

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 160/389 (41%), Gaps = 56/389 (14%)

Query: 9   QYEQQLAEKVDRLRQMML--AFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +YE QL  K + ++  +    F    ++  I    P  YR + E     DG    H    
Sbjct: 101 KYEDQLTHKENLIKGYLAEAGFDTNLVKPIIGMDNPYRYRNKMELTFGVDGSLGMH---- 156

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL---------------EPLLRAKLFQIDY 109
           QQ   R  ID  +  S+L    MI +   +                 E LL   L +  +
Sbjct: 157 QQGNYRKVID--LEDSILAPEEMIAIKKVVSKWQKDYQFPGLDKDTKEGLLCNLLMRQSF 214

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD------ 163
            T +   AI  L       +A  +   RL +A   R    Q + +   T+   D      
Sbjct: 215 ATGEIMVAIYALEAPDAYTEAIEDLTQRLLNA-QPRIVSFQWLKKNGGTERSYDNDVYLI 273

Query: 164 --RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELYCG 219
             RDY+++ L    +   +R   ++F Q N      M+E  +   + ++ D+  L+L+CG
Sbjct: 274 HGRDYINDEL----QGFKFRIWPDTFFQVNPVQANKMVETAIDMAQ-VKEDMKVLDLFCG 328

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G FSL LA     +  +EI + S+ +A+ N A N+++N          F  A       
Sbjct: 329 IGTFSLPLAAASKSLAGIEIVENSINSAKRNAADNNLDNT---------FFMASDARAGL 379

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILS 336
             L D+     +   + +DPPR+G     +  +  +    I+Y+SC P SL  DL  +L 
Sbjct: 380 RVLPDV---WGQPDLLLLDPPRNGAGGKVMRAIGRFGTDRIVYVSCGPKSLAADLVWLLD 436

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  +   DQFP+T H+E  VLL +K
Sbjct: 437 FGYEVVEVQPIDQFPHTAHLENIVLLKKK 465


>gi|325118195|emb|CBZ53746.1| Methyltransferase, related [Neospora caninum Liverpool]
          Length = 665

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 19/163 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G F+L     FD V+  +++  S+E A++N   N     +     +K F ++  
Sbjct: 487 DCYCGVGLFALACHDEFDEVVGFDVSPSSIELAKHNAQFNSKWRARFEVSDAKTFFESFG 546

Query: 275 REREFNRLKDIDIHSYRFKTIFV--DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                        HS     +FV  DPPR G D   +  +++  P  I+YISC+P +  R
Sbjct: 547 AR-----------HSSASSRLFVVLDPPRKGCDAEFLQSLLKLKPERIVYISCHPATQAR 595

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS----GW 369
           DL    + + ++ +  FD FP++RH+EC + L R  S    GW
Sbjct: 596 DLKAFLSLYAVKNVQPFDMFPHSRHIECVITLERTASEQAHGW 638


>gi|71415097|ref|XP_809627.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874038|gb|EAN87776.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 568

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 27/196 (13%)

Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N +G+ + + E    A  G +  LL+L CG G   L LA+H  RV+ +E+ + +
Sbjct: 375 TSFFQVNTSGMELLLCETAKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESA 434

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV---DPP 300
           V  AR N   N + NV       +     +      N L + D      KT  V   DPP
Sbjct: 435 VSDARQNAKRNDIANVTFCSGRVEHLLPDI-----INSLPEED------KTDIVAILDPP 483

Query: 301 RSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT-------IERLALF--D 348
           R+G+    +  ++  P I   +YISC   +L RD   L+ + T        E +A F  D
Sbjct: 484 RAGVTPTVLKWIRGTPTIRRVVYISCEQKALERDCPSLTKSTTKAYRGLPFELVASFAVD 543

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   +L R
Sbjct: 544 LFPHTPHVEMVAVLAR 559


>gi|313608260|gb|EFR84264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           FSL F2-208]
          Length = 453

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   A
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +                   + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA------------GIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|238786792|ref|ZP_04630593.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia frederiksenii
           ATCC 33641]
 gi|238725160|gb|EEQ16799.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia frederiksenii
           ATCC 33641]
          Length = 425

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 31/203 (15%)

Query: 180 YRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
           Y QIE          F Q N  +N  M+   +     +Q D  +L+L+CG GNF+L LA+
Sbjct: 236 YYQIEGLRLAFHPRDFIQVNDAVNQQMVAQAIVWLD-VQPDERVLDLFCGMGNFTLPLAK 294

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     V   +YN   N + N                     N   DI    
Sbjct: 295 LAREVVGVEGVAALVANGQYNAFNNALPNASFFHE---------------NLESDISCQP 339

Query: 290 YR---FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERL 344
           +    F  + +DP R+G       +++  P  ++Y+SCNP +L RD  + L+  + + ++
Sbjct: 340 WATQGFDKVLLDPARAGAAGVMSHIIKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQV 399

Query: 345 ALFDQFPYTRHMECGVLLVRKPS 367
            + D FP+T H+E   L +++P 
Sbjct: 400 RMLDMFPHTGHLESMALFIQEPG 422


>gi|78223042|ref|YP_384789.1| 23S rRNA methyltransferase/RumA [Geobacter metallireducens GS-15]
 gi|78194297|gb|ABB32064.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter metallireducens
           GS-15]
          Length = 440

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 158/366 (43%), Gaps = 46/366 (12%)

Query: 17  KVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYF 76
           +  R+    +A  VP+       P  YR R +F +      L    + + +   + I   
Sbjct: 101 RFGRIESERVARAVPS-----DSPYGYRSRVQFKVRWTAGKLQMGFYRRGSHYVVDIPE- 154

Query: 77  MPGSLLINALMIEMMATIRLEPLLRA-----KLFQIDYLTSQSDQAIVTLIYHRLLD--D 129
             G  + N+ + +++A IR  P++       ++ Q+D   +  D  +   + H + D  D
Sbjct: 155 --GCAICNSALNQVLAEIR--PVISCFAEPDRIPQVD--VAVGDDGVTLAVVHYIGDNRD 208

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT------VAGRTLIYRQI 183
             R      R  L A        GR    +     D +  R        +   TL + + 
Sbjct: 209 RARAHFTACRSDLPAVGGLHLQCGRKESIEPLWGDDALTYRFPGDFLPKLPSMTLSFSR- 267

Query: 184 ENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
              F+Q N   N  +L  V  +A   G +  LL+L+CGNGNF++ L+R+   V+ +E   
Sbjct: 268 -GGFSQVNYRQNRELLRAVHRMADLTG-EERLLDLFCGNGNFAIPLSRYAMAVVGIEDYG 325

Query: 242 PSVEAARYNIAANHVNNVKIVRM-SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           PS+E AR N AAN    ++ +R  ++    Q + RE+ ++              + +DPP
Sbjct: 326 PSLEDARRNAAANGAGKIEFIRSDAAAGVRQLVSREKHYS-------------VVVLDPP 372

Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
           R+G  +A   +    P  ++Y+SC+P +L RDL +   + + +      D FP T H+E 
Sbjct: 373 RTGAKEAVTEVTSLRPERVVYVSCDPATLGRDLGLFRKSGYDVRECLPVDMFPQTFHIES 432

Query: 359 GVLLVR 364
             LL R
Sbjct: 433 VTLLSR 438


>gi|295109231|emb|CBL23184.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus obeum A2-162]
          Length = 462

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 27/218 (12%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQ 210
           ++++T+I   +DY  E L      L +R    SF QPN   A +  +++   +  T G++
Sbjct: 266 QSDETRILYGQDYFYETLL----GLKFRISTFSFFQPNSLAAEVLYNIVREYIQNTSGME 321

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +LY G G  + +LA     V+ +EI + +V+AAR N   N ++N + +        
Sbjct: 322 --VFDLYSGTGTIAQLLAPVAKEVIGIEIIEDAVKAARENAKLNGLDNCRFIAG------ 373

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
                    + LK +D  + +   I +DPPR G+    +  + +Y    I+Y+SC   SL
Sbjct: 374 ---------DVLKVLDDLTEKPDVIVLDPPRDGIHPKALPKILSYGVNRIVYVSCKATSL 424

Query: 329 CRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL + L+  + +E+    DQF  T   E   LLV++
Sbjct: 425 ARDLEAFLAAGYRLEKACCVDQFCETVWTEAVALLVKE 462


>gi|308180110|ref|YP_003924238.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308045601|gb|ADN98144.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 457

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 18/164 (10%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ Y G G  SL +A+H  +V  VEI   +++ AR N   N + N   V  S
Sbjct: 305 GLTGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDS 364

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISC 323
           ++   +AM + +      D+         I VDPPR GLD D      +  P  ++YISC
Sbjct: 365 AE---KAMAKWQADGVKPDV---------IVVDPPRKGLDADFIKSAGEMAPKRVVYISC 412

Query: 324 NPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +L RD    +    H    +   DQFP T H+E   +L R+
Sbjct: 413 NPSTLVRDAQRFAEYGYHISAPVQPVDQFPQTPHIESVTVLERE 456


>gi|255094342|ref|ZP_05323820.1| putative RNA methyltransferase [Clostridium difficile CIP 107932]
 gi|255316095|ref|ZP_05357678.1| putative RNA methyltransferase [Clostridium difficile QCD-76w55]
 gi|255518756|ref|ZP_05386432.1| putative RNA methyltransferase [Clostridium difficile QCD-97b34]
 gi|260684898|ref|YP_003216183.1| putative RNA methyltransferase [Clostridium difficile CD196]
 gi|260688556|ref|YP_003219690.1| putative RNA methyltransferase [Clostridium difficile R20291]
 gi|260211061|emb|CBA66419.1| putative RNA methyltransferase [Clostridium difficile CD196]
 gi|260214573|emb|CBE07127.1| putative RNA methyltransferase [Clostridium difficile R20291]
          Length = 452

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    
Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPK 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M RE +   +            + VDPPR G D+  +  +V   P  I+Y+SCNP +L R
Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLAR 416

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365
           DL  L+  H  + +     D FP++ H+E    ++++
Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETVAKIIKQ 452


>gi|149181245|ref|ZP_01859743.1| YfjO [Bacillus sp. SG-1]
 gi|148850970|gb|EDL65122.1| YfjO [Bacillus sp. SG-1]
          Length = 467

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 17/184 (9%)

Query: 186 SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N    +H+   V   AA  G +  L++ YCG G   + L+     +  +++ K  
Sbjct: 296 AFFQLNPTQTIHLYNEVRDAAALTGHE-KLVDAYCGVGTIGMWLSNGAKEIRGMDVVKEG 354

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E AR N     ++N      +++E+    + E             +R   + VDPPR+G
Sbjct: 355 IENARKNSKKFGMDNATYEVGTAEEWLPKWKAE------------GWRPDVVVVDPPRTG 402

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
            + + +  + +  P   +Y+SCNP +L +DL  LS ++ +E +   D FP T H+E    
Sbjct: 403 CEPSFLNTILKVKPKKFIYVSCNPSTLAKDLKTLSKSYDVEYIQPVDMFPQTAHVESVAK 462

Query: 362 LVRK 365
           LV K
Sbjct: 463 LVLK 466


>gi|167626443|ref|YP_001676943.1| 23S rRNA 5-methyluridine methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167596444|gb|ABZ86442.1| RNA methyltransferase, TrmA family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 449

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 95/189 (50%), Gaps = 17/189 (8%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
           VAG  + +    N FTQ N  IN  M++  +   +  + D +++L+CG GNF+L ++++ 
Sbjct: 266 VAGINIGFEP--NDFTQVNNDINKKMIKRAIDLLEISENDSIIDLFCGLGNFTLPISQYA 323

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE  +  V  A+   A N+++NVK     +    ++   +  FN        ++ 
Sbjct: 324 KTVIGVEGEQTMVNRAKETAANNNISNVKFY---AANLFESFEDKEWFN--------NFE 372

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348
           +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL     + +    + D
Sbjct: 373 YNKMLLDPPRAGAQEVCSNIEKFDVERIVYVSCDTATLARDAGILVNDKGYKLVSAGVMD 432

Query: 349 QFPYTRHME 357
            FP+T H+E
Sbjct: 433 MFPHTMHVE 441


>gi|297622046|ref|YP_003710183.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
           86-1044]
 gi|297377347|gb|ADI39177.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
           86-1044]
          Length = 441

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 22/172 (12%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            +++W  A  KG +  +L+ YCG G  SL+LAR   RV+ VE    ++  A  N + N +
Sbjct: 288 QVIDW--AELKGGE-RVLDAYCGVGTLSLLLARKAGRVVGVECVPQAIADAERNASLNCL 344

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315
            NV  V   ++++ Q+                + R   + ++PPR G     +  +    
Sbjct: 345 ANVSFVCAEAEKWIQS----------------AERMDLVVLNPPRKGCHPEMIKAIGKMR 388

Query: 316 -PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              ++Y+SC+P +L RDL++L  + + I+    FD FP T H+E  V L  K
Sbjct: 389 PTRLIYVSCDPATLARDLAMLQESGYKIDGACPFDMFPQTAHVETVVKLSTK 440


>gi|94994824|ref|YP_602922.1| tRNA (uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|94548332|gb|ABF38378.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 451

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 156/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174
           Q  + ++  + +  A      R    L     Q++ +   +N++K      Y DE   + 
Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNRSK--SSEIYGDETEILW 260

Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           G+  I+ ++          +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 261 GQEAIHEEVLDYGFALSPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  A   +N          + +A + E    +    
Sbjct: 321 TFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|260437263|ref|ZP_05791079.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
 gi|292810573|gb|EFF69778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
          Length = 453

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 31/216 (14%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL---- 213
           TK+   +DY+ E L      L ++    SF Q N+       E +   T+   G++    
Sbjct: 259 TKVLYGKDYIYEELL----GLKFKITPFSFFQTNS----LGAEVLYTKTREFVGEIDNQV 310

Query: 214 -LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             +LY G G  + +LA    +V+ VEI + +V AAR N   N ++N         EF   
Sbjct: 311 VFDLYSGTGTIAQILAPVAKKVVGVEIIEEAVVAARENARLNGLDNC--------EFIAG 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                  + LK ID    +   I +DPPR G+    +  +  +    I+Y+SC P SL R
Sbjct: 363 -------DVLKVIDDIKDKPDMIVLDPPRDGIHPKAIDKIIDFGVNKIVYVSCKPTSLAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ I     + ++++   D FP T H+E  VL+ RK
Sbjct: 416 DIEIFEARGYKVKKVCCVDMFPGTGHVETVVLMSRK 451


>gi|217964101|ref|YP_002349779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           HCC23]
 gi|290893407|ref|ZP_06556392.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|217333371|gb|ACK39165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           HCC23]
 gi|290557058|gb|EFD90587.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|307571331|emb|CAR84510.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
           monocytogenes L99]
          Length = 453

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   A
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +                   + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA------------GIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|17231146|ref|NP_487694.1| hypothetical protein alr3654 [Nostoc sp. PCC 7120]
 gi|50401636|sp|Q8YR05|Y3654_ANASP RecName: Full=Uncharacterized RNA methyltransferase alr3654
 gi|17132787|dbj|BAB75353.1| alr3654 [Nostoc sp. PCC 7120]
          Length = 460

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 21/173 (12%)

Query: 202 VLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V+ +   +QG   L++ YCG G  +L L++   + + +E+   +V+ A  N   N +NNV
Sbjct: 300 VIESQLNLQGHETLIDAYCGIGTLTLPLSKQVRQAIGLELQPEAVQQAIVNAQHNGINNV 359

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-H 317
                   EF Q    E+   ++  I         + +DPPR G D   +  ++ + P  
Sbjct: 360 --------EF-QVGAVEKLLPKMGIIP------DVVLLDPPRKGCDRIVIESLLASKPAR 404

Query: 318 ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           I+Y+SC   +L RDL +L T  T+TI+R+   D FP T H+E    LV   SG
Sbjct: 405 IVYVSCKVATLARDLKLLCTDGTYTIQRIQSADFFPQTSHVEVAAFLVLSQSG 457


>gi|254520203|ref|ZP_05132259.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226913952|gb|EEH99153.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 453

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 25/214 (11%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214
           K  +   +DY+ E L      L ++    SF Q N       L  ++    G   D  + 
Sbjct: 258 KVNLLFGKDYITENLL----GLQFKISPFSFFQTNTK-GAESLYSIVRDFMGESNDKVVF 312

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G    + A +  +V+ +E+ + +VEAA+ N   N++NN + +     E  + ++
Sbjct: 313 DLYCGTGTIGQIAASNAKKVVGIELIEEAVEAAKENAKLNNLNNCEFLAGDVAEIIKTVK 372

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332
            + +                I +DPPRSG+    +  V  +    I+Y+SCNP +L  +L
Sbjct: 373 DKPDI---------------IILDPPRSGVHPKALEYVIKFNAKEIIYVSCNPKTLVENL 417

Query: 333 -SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             ++   + + +  + D FP T H E  V LV K
Sbjct: 418 RDLIGAGYKVVQSTVKDMFPNTPHAEVVVKLVLK 451


>gi|300718123|ref|YP_003742926.1| 23S rRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661]
 gi|299063959|emb|CAX61079.1| 23S rRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661]
          Length = 438

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 17/183 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   LA       D +L+L+CG GNF+L + +    V  VE       
Sbjct: 269 FIQVNGALNEQMVSQALAWLDLQPEDRVLDLFCGMGNFTLPVGKVVKNVTGVEGVAALAA 328

Query: 246 AARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
              YN A N++NNV   + + +E  T+       FN+             + +DP R+G 
Sbjct: 329 KGGYNAALNNLNNVSFFQHNLEEDVTRQPWAAEGFNK-------------VLLDPARAGA 375

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362
                 +++  P  ++Y+SCNP +L RD  S+L++ + +ER+ L D FP+T H+E  VL 
Sbjct: 376 AGVMDHIIKLAPERVVYVSCNPTTLARDSQSLLTSGYQLERITLLDMFPHTGHVESMVLF 435

Query: 363 VRK 365
            RK
Sbjct: 436 SRK 438


>gi|262377436|ref|ZP_06070659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter lwoffii
           SH145]
 gi|262307666|gb|EEY88806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter lwoffii
           SH145]
          Length = 462

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 18/185 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N+ IN  M+       +  QG+ +L+L+CG GNFSL LAR       V   + S E
Sbjct: 285 FTQVNSSINPQMVRLACDLLQLQQGERVLDLFCGLGNFSLPLARCVGASGQVIAVEGSDE 344

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
             R        N +  +   S++ T            KD   H++    F  + +DPPR+
Sbjct: 345 MVRRGAENAKNNGIAQISFYSQDLT------------KDFSHHTWANQGFDALLIDPPRA 392

Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G ++    + Q     I+Y+SCNP +L RD  +L    + + +  + D F +T H+E   
Sbjct: 393 GAEEVMHYIPQFGAKRIVYVSCNPATLARDAGLLVQQGYRLTQAGVMDMFTHTGHVESIA 452

Query: 361 LLVRK 365
           L  ++
Sbjct: 453 LFEKE 457


>gi|253699961|ref|YP_003021150.1| RNA methyltransferase, TrmA family [Geobacter sp. M21]
 gi|251774811|gb|ACT17392.1| RNA methyltransferase, TrmA family [Geobacter sp. M21]
          Length = 447

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 21/185 (11%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           I+    +SF Q N+G    + E V  LA  KG +  ++++YCG G  SL LA     V+ 
Sbjct: 268 IFNLSPHSFFQVNSGAARIIYEKVRELANLKGTE-RVIDVYCGIGGISLFLADQAREVVG 326

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E  + +V  A  N A N V N         E   A+    E       ++       I 
Sbjct: 327 IEFVEAAVADATINAALNRVENCHF------EAGDAVHLIDEIGEEGGAEL-------IV 373

Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPY 352
           ++PPR G D+  +  V A   P I+Y+SC+P++L RDL ILS     T+E +   D FP 
Sbjct: 374 LNPPRKGCDEKVLRSVAAIKPPRIIYVSCSPETLARDLDILSGLGYRTVE-VHPVDMFPQ 432

Query: 353 TRHME 357
           T H+E
Sbjct: 433 TVHVE 437


>gi|281425818|ref|ZP_06256731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302]
 gi|281400079|gb|EFB30910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302]
          Length = 479

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 26/210 (12%)

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYC 218
           E  T  G   IY  +E+        SF Q N     H+   V  A   + G  L  +LY 
Sbjct: 283 ELTTFKGTDFIYETMEDLKFKVGPKSFYQTNTEQAYHLYS-VARAFAALTGKELVYDLYT 341

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +  +A    +V+ +E    ++E A+ N   N ++N        K           
Sbjct: 342 GTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSKVNGIDNTLFYAGDMK----------- 390

Query: 279 FNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL 335
            N L D  IH + R   I  DPPR+G+    V ++  A P  ++Y+SCNP +  RDL ++
Sbjct: 391 -NILTDDFIHEHGRPDVIITDPPRAGMHPDVVQVILNAAPKRVVYVSCNPATQARDLQLM 449

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + +  +   D FP+T H+E  VL  R+
Sbjct: 450 DADYKVTAVQPVDMFPHTPHVENVVLQERR 479


>gi|88808527|ref|ZP_01124037.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 7805]
 gi|88787515|gb|EAR18672.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 7805]
          Length = 466

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 22/172 (12%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + +W+ A+      ++++ YCG G  +L LA     V+ +EI + SV  A+ N   N + 
Sbjct: 302 ICDWIHASAP--SANVIDAYCGIGTIALPLAASGLNVVGLEINRDSVIQAQENAQRNGLE 359

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
            V  +     E  + +    +                + VDPPR GL  A + M+ A P 
Sbjct: 360 KVCFLDGDVAEHLEQLLPHHQ---------------ALVVDPPRKGLAPAVLQMILAIPP 404

Query: 318 --ILYISCNPDSLCRDLSILSTT---HTIERLALFDQFPYTRHMECGVLLVR 364
             ++Y+SC+P +L RDL  L+     + IE++   D FP T H+EC V+++R
Sbjct: 405 AFLIYLSCDPATLARDLQQLAGPDGPYRIEQIKPVDFFPQTSHLECLVMMIR 456


>gi|116873184|ref|YP_849965.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742062|emb|CAK21186.1| RNA methyltransferase, TrmA family [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 453

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N A N + N       ++E    
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAALNELTNTTFETGKAEEVIPN 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +            +      + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYK------------NGITADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYEAKKVQPVDMFPMTTHIEAVTVL 450


>gi|330504041|ref|YP_004380910.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas mendocina
           NK-01]
 gi|328918327|gb|AEB59158.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas mendocina
           NK-01]
          Length = 452

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 27/230 (11%)

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM---- 198
           H  +  +Q  G+      C +  +  +R  +    L YR     F Q N  +N  M    
Sbjct: 242 HRAQLWLQGEGQPQPDDPCAELGFELQRWQL---QLAYR--PGDFVQVNGLVNEAMVAQA 296

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L+W+  A K  +  +L+L+CG GNF+L LAR    V+AVE     VEA     AAN  NN
Sbjct: 297 LDWL--AVK-PEERVLDLFCGLGNFALPLARQAAEVVAVE----GVEAMVLRAAANARNN 349

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH 317
                + +  F +A       N L         F  + +DPPR G  +   GM +     
Sbjct: 350 ----GLGNAHFYRADLS----NPLASETWARGGFPAVLLDPPRDGALEVVRGMSELGARR 401

Query: 318 ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           ++Y+SCNP +L RD + ++   + + R  + D F  T H+E  + L  KP
Sbjct: 402 LVYVSCNPTTLARDAAELVRQGYRLRRAGILDMFAQTAHVEA-MALFEKP 450


>gi|300721894|ref|YP_003711172.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628389|emb|CBJ88954.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 451

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 25/187 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L        D +L+L+CG GNF+L +A     V+ VE     V 
Sbjct: 271 FIQVNDEVNQQMVAQALMWLDLQPTDRVLDLFCGMGNFTLPMATKVQAVVGVEGVAALVS 330

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH-----SYRFKTIFVDPP 300
           + +YN   N + NV                   F+   + DIH     +  F  + +DP 
Sbjct: 331 SGQYNARLNELKNVDF-----------------FHENLESDIHQQPWAALGFNKVLLDPA 373

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358
           R+G       +V+  P  ++Y+SCNP +L RD  + L   + +  + + D FP+T H+E 
Sbjct: 374 RAGAAGVMSHIVKLAPDKVVYVSCNPTTLARDSKVMLEAGYHLVSVRMLDMFPHTGHLES 433

Query: 359 GVLLVRK 365
             L  R+
Sbjct: 434 MALFSRE 440


>gi|309776573|ref|ZP_07671553.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915674|gb|EFP61434.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 456

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 16/160 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   + +++   +V+ VEI + +VE AR N   N ++N++ V   +  +   
Sbjct: 308 VLDAYCGIGTIGMYVSQFVKQVVGVEINRDAVEDARINAKINRISNIRFVCEDAGRYMTR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
           +  E++            R   + +DPPRSG  +  +  +V+  P  +LYISCNP +  R
Sbjct: 368 LAAEKK------------RLDVVIMDPPRSGSSEEFIKSLVRMKPRQVLYISCNPQTQVR 415

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           DL +L          +   D FP+T H+E   L+ +   G
Sbjct: 416 DLQMLERMGYRVDGNMVPVDLFPHTFHVETVALMSKVNPG 455


>gi|229125919|ref|ZP_04254944.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228657577|gb|EEL13390.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
          Length = 459

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 163/378 (43%), Gaps = 42/378 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +++      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226
           + +I   + +        +F Q N    V +  E   AA      ++++ YCG G   L 
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNENIVDAYCGVGTIGLW 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +++   ++  AR N   +   N K     ++++     +E          
Sbjct: 331 LANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344
              +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++ +E +
Sbjct: 381 --GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVEYV 438

Query: 345 ALFDQFPYTRHMECGVLL 362
              D FP+T H+E  V L
Sbjct: 439 QPVDMFPHTAHVENVVRL 456


>gi|319789139|ref|YP_004150772.1| RNA methyltransferase, TrmA family [Thermovibrio ammonificans HB-1]
 gi|317113641|gb|ADU96131.1| RNA methyltransferase, TrmA family [Thermovibrio ammonificans HB-1]
          Length = 428

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 19/155 (12%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  ++ +AR+  R   VE    +V  A YN     +N ++ V    +E  +A++
Sbjct: 287 DLYCGVGTLTIPVARYVHRAFGVEANFSAVADALYN---KDINGLRNVNFYCRETEEALK 343

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCRD 331
             RE       D+       + VDPPRSGL++  +  +   P    ++Y+SCNP +L RD
Sbjct: 344 IIRE----NGPDL-------VVVDPPRSGLNEKIIRTIATLPRLRRVIYVSCNPATLARD 392

Query: 332 LSILSTTHT-IERLALFDQFPYTRHMECGVLLVRK 365
           +++       +ER  + D FP T H+E  +  +RK
Sbjct: 393 VALFYKYGVHMERAKVLDMFPQTYHVET-ICFLRK 426


>gi|325479240|gb|EGC82336.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 455

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 21/184 (11%)

Query: 186 SFTQPN--AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF QPN      ++   + LA   G Q D+L+LY G G  + V+A        +EI + +
Sbjct: 288 SFFQPNIYTAEKLYQKAFDLAKIDG-QMDILDLYSGTGTITQVMATQAKSATGIEIVREA 346

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N   N + N+  +                 + L++I+    ++  + +DPPR+G
Sbjct: 347 VDKAWENSKLNDIKNIDFLCG---------------DVLEEIEKVGNKYDVVILDPPRAG 391

Query: 304 LDDATVGMVQA--YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
           +   ++  +        +YISCNP +   ++    S+ + I+   LFDQFP +RH+E   
Sbjct: 392 ISSNSLEKILKIDTKKFIYISCNPKTQVENIKEFTSSGYKIKDYELFDQFPRSRHLEAIA 451

Query: 361 LLVR 364
           LL +
Sbjct: 452 LLEK 455


>gi|260556074|ref|ZP_05828293.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii ATCC 19606]
 gi|260410129|gb|EEX03428.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii ATCC 19606]
          Length = 463

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 26/188 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR       V   + S E
Sbjct: 286 FTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGVVVGVEASEE 345

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
             +        NN+      S++ T            KD   HS+    F  + +DPPR+
Sbjct: 346 MVQRATDNAKRNNLVQASFFSQDLT------------KDFSHHSWANQGFDALLIDPPRA 393

Query: 303 GLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           G  +    ++Q  P+     I+Y+SCNP +L RD  +L    + +++ A+ D F +T H+
Sbjct: 394 GAYE----IMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHTEHV 449

Query: 357 ECGVLLVR 364
           E   L  +
Sbjct: 450 ESIALFEK 457


>gi|325066757|ref|ZP_08125430.1| 23S rRNA methyluridine methyltransferase [Actinomyces oris K20]
          Length = 317

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 17/153 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAM 273
           +L+CG G F+L LA    RVL VE++  +++ AR   AA+ +  +  +VR  + +     
Sbjct: 178 DLFCGVGGFALALAAPGRRVLGVEVSASAIDGARA--AADLMGLDPALVRFEAGD----- 230

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331
                  R+ D    + R   + V+PPR G+ +     ++A     +LY SCNP +L  D
Sbjct: 231 ------ARVLDPAARAQRPDLLVVNPPRRGIGEQLATRIEASGVERVLYSSCNPRTLAAD 284

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L+ L +   + R  LFD FP+T H E  V LVR
Sbjct: 285 LAHLPSMRVV-RSRLFDMFPHTEHAEVLVELVR 316


>gi|167631004|ref|YP_001681503.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Heliobacterium
           modesticaldum Ice1]
 gi|167593744|gb|ABZ85492.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Heliobacterium
           modesticaldum Ice1]
          Length = 490

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 26/188 (13%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-----DLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           SFTQ    +N    E +   TK + G      +++ YCG G  SL LAR   RV+ +E  
Sbjct: 317 SFTQ----VNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLARDCARVIGIEEV 372

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +VE A+ N   N + NV+ +    ++   ++       R    D+       I +DPP
Sbjct: 373 PMAVEDAQKNAEQNGITNVEFLTGKVEDLLPSL-----LERACVPDV-------IVLDPP 420

Query: 301 RSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHM 356
           R G     +  + Q  P  I+Y+SC+P SL RD + L T H   ++++   D FP T H+
Sbjct: 421 RRGCHARVIEAIAQTGPDRIVYVSCDPASLARDAARL-TAHGWQVKQVTPVDMFPQTGHV 479

Query: 357 ECGVLLVR 364
           E  VL+ R
Sbjct: 480 ETVVLMSR 487


>gi|162447371|ref|YP_001620503.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985478|gb|ABX81127.1| RNA methyltransferase, TrmA family [Acholeplasma laidlawii PG-8A]
          Length = 451

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 16/152 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G    S  + +    + A+EI + +V++A+ ++  NH++NV ++      F  A
Sbjct: 311 VVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDNVTVIE---NNFEDA 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           +      + LKDI I    F     DPPRSGL +  +  +  Y    ++Y SCNP +L +
Sbjct: 368 L------DNLKDIKIDVMLF-----DPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAK 416

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DLS+L   + ++ +   D FPYT  +E   LL
Sbjct: 417 DLSLLLEDYDLKHITPIDMFPYTSLVESITLL 448


>gi|30260591|ref|NP_842968.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|47525703|ref|YP_017052.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183442|ref|YP_026694.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|65317856|ref|ZP_00390815.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Bacillus anthracis str.
           A2012]
 gi|165870726|ref|ZP_02215379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
 gi|167634708|ref|ZP_02393027.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
 gi|167641292|ref|ZP_02399545.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
 gi|170688986|ref|ZP_02880187.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
 gi|170707136|ref|ZP_02897592.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
 gi|177654527|ref|ZP_02936383.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
 gi|190567598|ref|ZP_03020511.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813100|ref|YP_002813109.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
           684]
 gi|229603797|ref|YP_002865038.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
 gi|254686816|ref|ZP_05150674.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724890|ref|ZP_05186673.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           A1055]
 gi|254738958|ref|ZP_05196660.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744546|ref|ZP_05202225.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Kruger B]
 gi|254756196|ref|ZP_05208225.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Vollum]
 gi|254762015|ref|ZP_05213864.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Australia 94]
 gi|50401539|sp|Q81Z48|Y426_BACAN RecName: Full=Uncharacterized RNA methyltransferase
           BA_0426/GBAA_0426/BAS0414
 gi|30253959|gb|AAP24454.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames]
 gi|47500851|gb|AAT29527.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177369|gb|AAT52745.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne]
 gi|164713560|gb|EDR19084.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
 gi|167510800|gb|EDR86193.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
 gi|167529782|gb|EDR92530.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
 gi|170127914|gb|EDS96785.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
 gi|170667087|gb|EDT17849.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
 gi|172080639|gb|EDT65722.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
 gi|190561385|gb|EDV15357.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004638|gb|ACP14381.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
           684]
 gi|229268205|gb|ACQ49842.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
          Length = 459

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++  AR N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E             +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL R
Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L  ++ +E +   D FP+T H+E  V L  K
Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVKLTLK 459


>gi|295702575|ref|YP_003595650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
           DSM 319]
 gi|294800234|gb|ADF37300.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
           DSM 319]
          Length = 461

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 25/212 (11%)

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           + DE  T++G+++I   + +        +F Q N    V + + V  A   + G+  +++
Sbjct: 262 FGDETFTLSGKSVIQETLGDISFELSARAFFQLNPLQTVKLYDEVKKAA-ALTGNEKIVD 320

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G   L LA+    +  ++  + S+  AR N   +   +   V  +++++     +
Sbjct: 321 AYCGVGTIGLWLAKDAKEIRGMDTIEESIVDARKNAQDHGFEHATYVTGAAEKWMPQWVK 380

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333
           E             ++   I VDPPR+G DD  +  + Q  P  ++Y+SCNP +L +D+ 
Sbjct: 381 E------------GWKPDVIVVDPPRTGCDDKLLKTILQVKPKKVVYVSCNPSTLAKDVQ 428

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            LS  + ++ +   D FP+T H+E  V L  K
Sbjct: 429 QLSKAYHVDYIQPVDMFPHTAHVENVVSLTLK 460


>gi|256833599|ref|YP_003162326.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Jonesia denitrificans
           DSM 20603]
 gi|256687130|gb|ACV10023.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Jonesia denitrificans
           DSM 20603]
          Length = 382

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 30/190 (15%)

Query: 186 SFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           SF Q N  +  H+     +W+  A       + +L+CG G F+L  A H +RV  VEI+ 
Sbjct: 208 SFFQTNTPVAAHLYRQAEQWIADARPQ---HVWDLFCGVGGFALHAAPHANRVTGVEISA 264

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT-----IF 296
            ++E+AR + A   + NV    + +  F+                 HS R        + 
Sbjct: 265 EAIESARTSAAERALTNVTFDALDATTFSTG---------------HSARLADGGPDLVV 309

Query: 297 VDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
           V+PPR G+  D    +  +  H ++Y SCN  SL +DL+ +       R  LFD FP+T 
Sbjct: 310 VNPPRRGIGVDLAEWLNASDAHTVVYSSCNARSLAKDLTAMPQFQPT-RARLFDMFPHTN 368

Query: 355 HMECGVLLVR 364
           H+E  VL+ +
Sbjct: 369 HVETVVLMSK 378


>gi|317502954|ref|ZP_07961044.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606]
 gi|315665920|gb|EFV05497.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606]
          Length = 479

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 24/209 (11%)

Query: 169 ERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219
           E  T  G   IY  +E+        SF Q N     H+     +  +   G+L+ +LY G
Sbjct: 283 ELTTFKGTDFIYETMEDLKFKVGPKSFYQTNTDQAYHLYCVARSFAQLTGGELVYDLYTG 342

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +  +A    +V+ +E    ++E A+ N   N +NN        K+           
Sbjct: 343 TGTIANFVAHQAKQVIGIEYVPEAIEDAKENSHVNGINNTLFYAGDMKDI---------- 392

Query: 280 NRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILS 336
             L D  I  + +   I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL ++ 
Sbjct: 393 --LTDDFIQGHGQPDVIITDPPRAGMHADVVKVILNASPKRIVYVSCNPATQARDLQLMD 450

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  +   D FP+T H+E  VLL R+
Sbjct: 451 ADYKVAAVQPVDMFPHTPHVENVVLLERR 479


>gi|315652265|ref|ZP_07905257.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
 gi|315485388|gb|EFU75778.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
          Length = 475

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 96/213 (45%), Gaps = 27/213 (12%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINV--HMLEWVLAATKGIQGDLL 214
           T +    DY+ ERL      L ++    SF Q N+ G  V   +    L  T+G    + 
Sbjct: 283 TTLLYGNDYITERL----NRLDFKITPFSFFQTNSKGAEVLYTVAGKYLGDTEGKS--VF 336

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G  + +LA   ++V  VEI + +VEAA  N   N +NN + +            
Sbjct: 337 DLYSGTGTIAQLLAPKSEKVYGVEIVEEAVEAAIENAKKNGLNNCEFIAG---------- 386

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
                + LK +D   +    I +DPPR G+    +  +  +    I+YISC P S  RDL
Sbjct: 387 -----DVLKVVDTLGFNPDIIVLDPPRDGIHPKALPKILDFGADKIVYISCKPTSFVRDL 441

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            I+ +  + +E+    D FP T + E   LL R
Sbjct: 442 KIMEAAGYKMEKCVGVDMFPNTVNCEAVALLSR 474


>gi|312623225|ref|YP_004024838.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203692|gb|ADQ47019.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 451

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 104/209 (49%), Gaps = 24/209 (11%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           +E + + G + I  +I N        SF Q N+     +   V+   + I+ +++ ++Y 
Sbjct: 252 EEDILIWGNSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYRQVVKYLRNIEAEVVFDIYS 311

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  S+ +AR   +V A+E+ + +VE A+ +   N ++N++ +  S+         E E
Sbjct: 312 GIGTISMFVARFCKKVYAIELVRDAVEDAKKSSKNNSISNIEFICGSA---------EIE 362

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL- 335
             +L    I     + + +DPPRSG +   +  +  +   +I+Y+SCNP +L RD +IL 
Sbjct: 363 IPKLLKSGIIP---QAVILDPPRSGCEKQLLESLIEHKIQNIIYVSCNPSTLARDANILC 419

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           S  + +  +   D FP T H+EC  L  +
Sbjct: 420 SNGYEVVEVQPVDMFPQTFHVECVTLFKK 448


>gi|210621791|ref|ZP_03292820.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275]
 gi|210154555|gb|EEA85561.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275]
          Length = 456

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA+   +V  +EI + +++ A+ N   N + N +     ++E    
Sbjct: 313 VFDIYCGIGTISLFLAQKAKKVYGIEIVEDAIKDAKRNAELNGLENTEFYAGKAEEVVPK 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M +E              +   + VDPPR G D+  +  +V   P  ++Y+SCNP +L R
Sbjct: 373 MYKE------------GKKADVVVVDPPRKGCDEKVLDTIVSMDPERVVYVSCNPSTLAR 420

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL+ +         +   D FP++ H+E   LL RK
Sbjct: 421 DLAYMDERGFKCVEIQPVDMFPHSVHVENVALLERK 456


>gi|328676686|gb|AEB27556.1| 23S rRNA (uracil-5-) -methyltransferase RumA [Francisella cf.
           novicida Fx1]
          Length = 449

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIQRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+   A N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETAADNNIVNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441


>gi|190575407|ref|YP_001973252.1| 23S rRNA 5-methyluridine methyltransferase [Stenotrophomonas
           maltophilia K279a]
 gi|226725396|sp|B2FPX2|RUMA_STRMK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|190013329|emb|CAQ46963.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 444

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   L   + G    +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  AR N   N + N +     S + TQ  R      +          F  + 
Sbjct: 325 VEGDAGLVARARENAVRNGLANAQFF---SADLTQDQRSTPWMRQ---------GFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432

Query: 354 RHME 357
            H+E
Sbjct: 433 AHVE 436


>gi|225159258|ref|ZP_03725559.1| RNA methyltransferase, TrmA family [Opitutaceae bacterium TAV2]
 gi|224802155|gb|EEG20426.1| RNA methyltransferase, TrmA family [Opitutaceae bacterium TAV2]
          Length = 451

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G F+L  A  F++V  +EI++ S+  AR N   N + N            QA
Sbjct: 288 LVDAYCGSGLFALSAASAFEKVAGIEISESSIVFARKNAELNGICNATF---------QA 338

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCR 330
                 F  L      +     + +DPPR G D++ +  +  Y    ++Y+SC+P +  R
Sbjct: 339 GDASAIFAGLTFPAADT----AVIIDPPRKGCDESFLQQLFGYGPRTVVYVSCDPATQMR 394

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL   L+  + +  +  FD FP TRH+EC + L
Sbjct: 395 DLRHFLAAGYELSAVQPFDLFPQTRHLECVITL 427


>gi|153811014|ref|ZP_01963682.1| hypothetical protein RUMOBE_01405 [Ruminococcus obeum ATCC 29174]
 gi|149832902|gb|EDM87985.1| hypothetical protein RUMOBE_01405 [Ruminococcus obeum ATCC 29174]
          Length = 456

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 14/154 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+    V  VEI   ++E AR N   N + NV+     ++E   A  
Sbjct: 311 DLYCGIGTISLFLAQKAKFVRGVEIVPAAIEDARRNAKLNDIGNVEFFVGKAEEVLPA-- 368

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDL 332
              E+ +      +      I VDPPR G D+  +  + +  P  ++Y+SC+  +L RDL
Sbjct: 369 ---EYEK------NGVYADVIVVDPPRKGCDEMLLKTILKMQPKRVVYVSCDSATLARDL 419

Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             L    + ++++   DQFP T H+E   LL +K
Sbjct: 420 RFLCDNGYELKKVCGVDQFPQTVHVETVCLLSKK 453


>gi|269468672|gb|EEZ80308.1| RNA methyltransferase [uncultured SUP05 cluster bacterium]
          Length = 438

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 22/185 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  +N  M+   L   +  + D +++L+CG GNF+L +ARH   V+ VE     +E
Sbjct: 269 FTQVNFKLNQKMINLALELLELNESDEVIDLFCGLGNFTLPIARHVKHVVGVEGDLGLIE 328

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A+YN   N++ NV   +    +         E+ R K+       +    +DP RSG  
Sbjct: 329 RAKYNADQNNITNVDFYKADLFQEVDGF----EWFRGKN-------YNKALLDPARSG-- 375

Query: 306 DATVGMVQAYPH-----ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECG 359
              + +V+  P      ++Y+SCNP +L RD + ++   + ++   + D FP T H+E  
Sbjct: 376 --ALEIVEFLPKLGIERLVYVSCNPATLARDTARLIELGYKLQTAGVMDMFPQTAHVESI 433

Query: 360 VLLVR 364
            L  +
Sbjct: 434 ALFTK 438


>gi|254523364|ref|ZP_05135419.1| 23S rRNA (uracil-5-)-methyltransferase [Stenotrophomonas sp. SKA14]
 gi|219720955|gb|EED39480.1| 23S rRNA (uracil-5-)-methyltransferase [Stenotrophomonas sp. SKA14]
          Length = 444

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   L   + G    +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  AR N   N + N +     S + TQ  R      +          F  + 
Sbjct: 325 VEGDAGLVARARENAERNGLANAQFF---SADLTQDQRSTAWMRQ---------GFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432

Query: 354 RHME 357
            H+E
Sbjct: 433 AHVE 436


>gi|309811112|ref|ZP_07704909.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Dermacoccus
           sp. Ellin185]
 gi|308434900|gb|EFP58735.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Dermacoccus
           sp. Ellin185]
          Length = 377

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 18/195 (9%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDR 233
           G   +Y Q   SF Q N  +   +     A    +    +L+LYCG G F+L LA    R
Sbjct: 199 GDVTLYLQ-HRSFFQTNTDVAAALYRQARAWADDVDARQVLDLYCGVGGFALHLADGTRR 257

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  VEI   ++++AR +  A    +   V     + +  +  E +   L           
Sbjct: 258 VHGVEIEPSAIDSARRS--ATEAGSDATVTFDVGDASTLVMPEHDVPDL----------- 304

Query: 294 TIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
            + V+PPR G++     + ++   H++Y SCNP SL  DL+ +  +  +    LFD FP+
Sbjct: 305 -VVVNPPRRGIEALADALERSCVAHVIYSSCNPTSLAADLAAMP-SFDVRAARLFDMFPH 362

Query: 353 TRHMECGVLLVRKPS 367
           T H E   LL R+P+
Sbjct: 363 TNHAEVAALLSRRPA 377


>gi|300727266|ref|ZP_07060682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii
           B14]
 gi|299775504|gb|EFI72098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii
           B14]
          Length = 484

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 26/204 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  IY  +E+        SF Q N     H+ E V      + G+ L  +LY G G  +
Sbjct: 294 GKDYIYETMEDLKFKVGPKSFYQTNTDQAYHLYE-VARNFAELNGEELVYDLYTGTGTIA 352

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
             +A H  +V+ +E    ++E A+ N   N ++N        K+             L D
Sbjct: 353 NFVAHHSKKVIGIEYVPEAIEDAKVNSEINGIDNTLFYAGDMKDI------------LTD 400

Query: 285 IDIHSY-RFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTI 341
             I  + R   I  DPPR+G+  D    ++ A P  I+Y+SCNP +  RDL++L   + +
Sbjct: 401 DFIKQHGRPDVIITDPPRAGMHPDVIQVILNAAPKRIVYVSCNPATQARDLALLDCDYKV 460

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
            ++   D FP+T H+E  V L R+
Sbjct: 461 MQVQPVDMFPHTPHVENVVQLYRR 484


>gi|218132418|ref|ZP_03461222.1| hypothetical protein BACPEC_00277 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992756|gb|EEC58758.1| hypothetical protein BACPEC_00277 [Bacteroides pectinophilus ATCC
           43243]
          Length = 547

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 25/216 (11%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           +  +T+I   +D+  E L      L +R    SF Q N+ +   +L        G   D 
Sbjct: 258 KNERTEIVFGQDFFYEELL----GLTFRITPFSFFQTNS-LGAEVLYSTAREYIGTTKDK 312

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LY G G  + ++A    +V+ VEI + +V AAR N A N +           EF  
Sbjct: 313 TVFDLYSGTGTIAQLMAPVAKKVIGVEIVEEAVVAARENAAHNGLTQC--------EFIA 364

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                   + LK ID    +   I +DPPR G+    +  + +Y   HI+YISC   SL 
Sbjct: 365 G-------DVLKVIDDIKDKPDIIILDPPRDGIHPKALPKILSYGVDHIVYISCKASSLA 417

Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL +I    +++E+    D FP T ++E  VLL +
Sbjct: 418 RDLVTIQDMGYSVEKACCVDMFPMTGNVETVVLLSK 453


>gi|153001658|ref|YP_001367339.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS185]
 gi|226725387|sp|A6WR37|RUMA_SHEB8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|151366276|gb|ABS09276.1| RNA methyltransferase, TrmA family [Shewanella baltica OS185]
          Length = 450

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 26/186 (13%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q N  IN  M    L+W+  A       +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 279 GNFVQVNGQINKAMVAQALDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298
              V  AR N  AN+++ +                    +   D+ +  +  +   + +D
Sbjct: 336 AEMVTQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356
           P R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + +++L L D FP T H+
Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHI 440

Query: 357 ECGVLL 362
           E   L 
Sbjct: 441 EAMALF 446


>gi|194366743|ref|YP_002029353.1| 23S rRNA 5-methyluridine methyltransferase [Stenotrophomonas
           maltophilia R551-3]
 gi|226725395|sp|B4SRK6|RUMA_STRM5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|194349547|gb|ACF52670.1| RNA methyltransferase, TrmA family [Stenotrophomonas maltophilia
           R551-3]
          Length = 444

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 86/184 (46%), Gaps = 18/184 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   L   + G    +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  AR N   N + N +     S + TQ  R      +          F  + 
Sbjct: 325 VEGDAGLVARARENAERNGLANAQFF---SADLTQDQRSTAWMRQ---------GFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432

Query: 354 RHME 357
            H+E
Sbjct: 433 AHVE 436


>gi|110834485|ref|YP_693344.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|123050449|sp|Q0VP26|RUMA_ALCBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|110647596|emb|CAL17072.1| RNA methyltransferase, TrmA family [Alcanivorax borkumensis SK2]
          Length = 445

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 31/182 (17%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           FTQ NA IN  M+   L     I  D  +L+L+CG GNF++  A+   +V+ VE+++  V
Sbjct: 273 FTQVNAEINRKMVPLALDLLD-ISPDHTVLDLFCGLGNFTIPAAKRAGKVVGVEVSQAMV 331

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT---IFVDPPR 301
           E    N   N + N++                  ++  +D+   ++  +T   I +DPPR
Sbjct: 332 ERGYENARRNSLENLEF---------------HAWDLSQDVSGQAWARQTYDRILIDPPR 376

Query: 302 SGLDDATVGMVQAYP-----HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355
           +G     + MV+  P      I+Y+SCNP +L RD   +++  + ++   + D FP+T H
Sbjct: 377 TG----ALEMVKLMPRLGASKIVYVSCNPATLARDAGELMALGYRLKAAGVMDMFPHTTH 432

Query: 356 ME 357
           +E
Sbjct: 433 VE 434


>gi|257126314|ref|YP_003164428.1| RNA methyltransferase, TrmA family [Leptotrichia buccalis C-1013-b]
 gi|257050253|gb|ACV39437.1| RNA methyltransferase, TrmA family [Leptotrichia buccalis C-1013-b]
          Length = 474

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271
           +++ + G G  +++L+++  +V+ +E  + S  AA+     N + NV+ V     KE  +
Sbjct: 328 VIDAFSGTGTIAMMLSKNIKKVIGIESIESSTLAAKLTSYENSIQNVEFVNGKVEKELPK 387

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329
            ++RE         D+ +  F     DPPR G++++ +  V       I+YISCNP +  
Sbjct: 388 ILKRE---------DVGAIVF-----DPPRRGIEESALKSVVKNKIEKIVYISCNPATFA 433

Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           RD+ IL+   + + ++A  D FP T H+E   ++ R
Sbjct: 434 RDVKILAENGYVLRKVAPVDMFPQTGHIEVVGMIQR 469


>gi|254372579|ref|ZP_04988068.1| RNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570306|gb|EDN35960.1| RNA methyltransferase [Francisella novicida GA99-3549]
          Length = 449

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+   A N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETAADNNIVNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441


>gi|218895544|ref|YP_002443955.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
 gi|218542488|gb|ACK94882.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
          Length = 459

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/379 (20%), Positives = 163/379 (43%), Gaps = 44/379 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           Y++QL +K D + Q    +   +++      +    P HYR +++  +    + +   ++
Sbjct: 96  YKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLY 155

Query: 64  DQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSD 115
            Q + + + I + M         + ++  ++ ++  +I  E   +  +  I   T+ Q+ 
Sbjct: 156 KQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTRTAVQTG 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  VTLI  +       +    ++  + A K  +Q +     + I     + D+   +AG
Sbjct: 216 EVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVI-----FGDKTFKLAG 270

Query: 176 RTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
           + +I   + +        +F Q N    + + +    A   + GD  +++ YCG G   L
Sbjct: 271 KEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAA-ALTGDEKIVDAYCGVGTIGL 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V  +++   ++  AR N   +   N K     ++++     +E         
Sbjct: 330 WLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--------- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   I VDPPR+G DD  +  + +  P  ++Y+SCNP SL RD+  L  ++ ++ 
Sbjct: 381 ---GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEVDY 437

Query: 344 LALFDQFPYTRHMECGVLL 362
           +   D FP+T H+E  V L
Sbjct: 438 VQPVDMFPHTAHVENVVRL 456


>gi|318606312|emb|CBY27810.1| 23s rRNA (Uracil-5-)-methyltransferase rumB [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 375

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 18/156 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    R+  +EI+  ++  AR +     + NV    + S +F  
Sbjct: 236 SMWDLFCGVGVFGLHCADTETRLTGIEISAEAIACARQSADQLGLKNVTFAALDSTQFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A   E +  +L            + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAQLCEYLSQMAPQFILYSSCNAETMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +D+S+L T + IER+ LFD FP+T H E   LL+++
Sbjct: 341 KDISLL-TDYRIERVQLFDMFPHTAHYEVLTLLIKR 375


>gi|301335320|ref|ZP_07223564.1| rRNA methyltransferase [Chlamydia trachomatis L2tet1]
 gi|301336306|ref|ZP_07224508.1| rRNA methyltransferase [Chlamydia muridarum MopnTet14]
          Length = 396

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 24/204 (11%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNA----GINVHMLEWVLAATKGIQGDLLELYCGNG 221
           ++ ++L++ GR+ ++     SF QP +     I + + +++    K     LL+LYCG G
Sbjct: 206 FLKQQLSLEGRSNLFHIRPRSFFQPQSRQAEKIILTIKDFISPTGKE---TLLDLYCGAG 262

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              ++L+ +  +V+ VE+   ++ +A  NI  N   N+++    +K F     +  E   
Sbjct: 263 TIGILLSPYVKKVIGVELVPDAIASAHENIQLNSA-NMEVFLEDAKRFC----KRNEQAP 317

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STT 338
             D+         + VDPPR G+ +  +  +   A   I+Y+SCNP +   + + L    
Sbjct: 318 APDV---------VIVDPPRCGMQNKALKYLLRIAPKKIVYVSCNPLTQIHECTTLVEQG 368

Query: 339 HTIERLALFDQFPYTRHMECGVLL 362
           + ++R+   DQFP+T H+E  VLL
Sbjct: 369 YKLQRMQPIDQFPHTHHLENVVLL 392


>gi|238879370|gb|EEQ43008.1| endo-exonuclease NUCR [Candida albicans WO-1]
          Length = 551

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 21/161 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  + +  +V+ VEI+  S+  A+ N   N++ N   +   ++E    
Sbjct: 401 LVDAYCGSGLFSITCSSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEI--- 457

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                       ID  + +  ++ +DPPR G DD  +  +  Y    I+YISCN  S  R
Sbjct: 458 ---------FASIDTPNNQ-TSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHSQAR 507

Query: 331 DL------SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+      ++    + +E +  FD FP T H+E   +L  K
Sbjct: 508 DIEWFINSTVNGNQYYVESIKGFDFFPQTHHVETVAVLSLK 548


>gi|282849051|ref|ZP_06258440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella parvula
           ATCC 17745]
 gi|282581326|gb|EFB86720.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella parvula
           ATCC 17745]
          Length = 505

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 119/288 (41%), Gaps = 41/288 (14%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------ 154
           AK F I+     + + I+  +  R+    W    +   D L H  K+   L  R      
Sbjct: 229 AKEFDIEPYNEHTGKGILRHVIGRIGQSGWMVILVTATDNLPHQEKWVKNLTERVPQVET 288

Query: 155 ------ANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL- 203
                   +T + L       Y D  +T   + L +    +SF Q N      + +  L 
Sbjct: 289 IVHNVNGKRTNVILGPKNRILYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALK 348

Query: 204 -AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-I 261
            A  KG +  +++ YCG G  SL LA     V+ +EI +P++  AR N   N  +N + I
Sbjct: 349 YANLKG-EETVIDAYCGTGTISLFLAHKAKHVIGIEIVEPAINNARENARRNGYDNTEFI 407

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPH 317
           V  ++ E  +  +                R   I  DP R+G  +    +  GM      
Sbjct: 408 VADAAVEMPKLYKA-------------GVRPDVIVFDPIRAGCKEEVLTSAAGMEPK--R 452

Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           I+Y+SCNP ++ RD+ IL+   + +E +   D FP T H+E   LL R
Sbjct: 453 IVYVSCNPATMARDIEILTHYGYELEEVQPVDMFPMTAHVEAVALLTR 500


>gi|307719372|ref|YP_003874904.1| hypothetical protein STHERM_c16950 [Spirochaeta thermophila DSM
           6192]
 gi|306533097|gb|ADN02631.1| hypothetical protein STHERM_c16950 [Spirochaeta thermophila DSM
           6192]
          Length = 371

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 25/197 (12%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA 228
           R+ V G     R   + F Q N  +   +LEWV    + G  G+  +LY G G FS VLA
Sbjct: 193 RVEVGGYVFFGRT--DLFFQSNLFVLERLLEWVEGVVSAGDGGEAWDLYAGVGVFSQVLA 250

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R   R   VE A  ++  A   +          V +S++ F +  R       +  +   
Sbjct: 251 RRGWRPRLVESAVAALGYAERGLG----GGAAYVGVSAERFLRGYR-----GGVPGV--- 298

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS-ILSTTHTIERLA 345
                 +  DPPRSG      G  +A   P ++YISCN  +  RD++ ++   + + RLA
Sbjct: 299 ------VVADPPRSGFSRTVRGFFEAQRVPLLVYISCNAATFARDVAHLMRAGYRLARLA 352

Query: 346 LFDQFPYTRHME-CGVL 361
            FD +P T HME  GVL
Sbjct: 353 FFDFYPQTPHMEVAGVL 369


>gi|68475067|ref|XP_718419.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
 gi|68475604|ref|XP_718150.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
 gi|46439906|gb|EAK99218.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
 gi|46440184|gb|EAK99493.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
          Length = 551

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 21/161 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  + +  +V+ VEI+  S+  A+ N   N++ N   +   ++E    
Sbjct: 401 LVDAYCGSGLFSITCSSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEI--- 457

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                       ID  + +  ++ +DPPR G DD  +  +  Y    I+YISCN  S  R
Sbjct: 458 ---------FASIDTPNNQ-TSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHSQAR 507

Query: 331 DL------SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+      ++    + +E +  FD FP T H+E   +L  K
Sbjct: 508 DIEWFINSTVNGNQYYVESIKGFDFFPQTHHVETVAVLSLK 548


>gi|125625220|ref|YP_001033703.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124494028|emb|CAL99028.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072030|gb|ADJ61430.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 513

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           NV   E V A        +++ YCG G     +A+    V  ++I   S+  AR N    
Sbjct: 316 NVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRL 375

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N         E  +A R    +N+        +R   + VDPPR+GLDDA +  +  
Sbjct: 376 GLKNCHY------EIGKAERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITK 423

Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +P   ++Y+SCN  +L +DL +L+  + +E +   D FP+T   E  V L ++
Sbjct: 424 FPPEKMVYVSCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKR 476


>gi|116513129|ref|YP_812036.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116108783|gb|ABJ73923.1| 23S rRNA m(5)U-1939 methyltransferase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 513

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           NV   E V A        +++ YCG G     +A+    V  ++I   S+  AR N    
Sbjct: 316 NVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRL 375

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N         E  +A R    +N+        +R   + VDPPR+GLDDA +  +  
Sbjct: 376 GLKNCHY------EIGKAERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITK 423

Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +P   ++Y+SCN  +L +DL +L+  + +E +   D FP+T   E  V L ++
Sbjct: 424 FPPEKMVYVSCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKR 476


>gi|56808950|ref|ZP_00366657.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus pyogenes
           M49 591]
          Length = 436

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 74  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 133

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 134 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 193

Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           Q  + ++  +          L  A+ +      ++  ++  +I      ++T+I   ++ 
Sbjct: 194 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 249

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           + E +   G  L  R    +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 250 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 305

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  A   +N          + +A + E    +    
Sbjct: 306 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 355

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 356 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 413

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 414 IQSVDMFPHTARTEAVVKLQKR 435


>gi|154507954|ref|ZP_02043596.1| hypothetical protein ACTODO_00440 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797588|gb|EDN80008.1| hypothetical protein ACTODO_00440 [Actinomyces odontolyticus ATCC
           17982]
          Length = 385

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 93/203 (45%), Gaps = 25/203 (12%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEW--VLAATKGIQGDLLE----LYCGNGNFS 224
           L+V G  L  R    SF Q NA +   + E   V A+     G L E    LYCG G F+
Sbjct: 198 LSVEGLELGPR----SFAQTNAHVASTLYEQASVWASRPFTDGRLPESLWDLYCGVGGFA 253

Query: 225 LVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           L  AR  F RV  VE++  ++ +A    AA H    +       +   A  R +    + 
Sbjct: 254 LACARSGFPRVTGVEVSPGAISSAIS--AARHAGLSRGAATFIADDATAWARAQSPEDVP 311

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
           D+         I ++PPR G+       +     P ++Y SCNP SL +DL+ + T   +
Sbjct: 312 DV---------IVINPPRRGIGADLAAYLNECDAPRVIYSSCNPASLAKDLTSMPTLFPV 362

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           E   +FD FP+T H+E  +LL R
Sbjct: 363 EGR-VFDMFPHTPHVEAALLLER 384


>gi|302386126|ref|YP_003821948.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
 gi|302196754|gb|ADL04325.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
          Length = 453

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 25/234 (10%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           R+   LH     +  + ++++T I   +DY  E L      + ++    SF Q N+ +  
Sbjct: 238 RIVGILHIFNDSLADVVKSDRTDILYGQDYFYEELL----GMKFKISPFSFFQTNS-LGA 292

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +L   +    G   D  + +LY G G  + ++A    +V+ VEI K +V+AA+ N   N
Sbjct: 293 EVLYETVRRYVGETKDKVVFDLYSGTGTIAQMIAPVAKKVVGVEIVKEAVDAAKENTRLN 352

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N + +               + + LK ID    +   I +DPPR G+    +G +  
Sbjct: 353 GLENCEFI---------------DGDVLKVIDELPDKPDLIILDPPRDGIHPKALGKIID 397

Query: 315 YP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +    ++Y+SC P SL RDL +L    + +E+    D FP T ++E  ++L RK
Sbjct: 398 FGVDRLVYVSCKPTSLARDLVVLQERGYKVEKACCVDMFPSTANVETIMMLERK 451


>gi|15675488|ref|NP_269662.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71911132|ref|YP_282682.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|50401662|sp|Q99YP3|Y1606_STRP1 RecName: Full=Uncharacterized RNA methyltransferase
           SPy_1606/M5005_Spy1319
 gi|13622683|gb|AAK34383.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71853914|gb|AAZ51937.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS5005]
          Length = 451

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 157/382 (41%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           Q  + ++  +          L  A+ +      ++  ++  +I      ++T+I   ++ 
Sbjct: 209 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           + E +   G  L  R    +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 265 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  A   +N          + +A + E   ++    
Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIISKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAVIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|297583617|ref|YP_003699397.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297142074|gb|ADH98831.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
           MLS10]
          Length = 464

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 154/385 (40%), Gaps = 51/385 (13%)

Query: 10  YEQQLAEKVDRLRQMM--LAFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QLA K + ++  +    F    ++  I   EP HYR + EF    DG    H    +
Sbjct: 100 YESQLAHKTESVKNGLEEQGFDPGRVKPAIGMKEPWHYRNKMEFTFSTDGKMGLH----E 155

Query: 66  QTKERMRIDY---FMPGSLLINALMIEMMATIRLE----------PLLRAKLFQIDYLTS 112
           Q   R  I      + G+ +++A MI        E           LLR  + +  + T 
Sbjct: 156 QGNFRGIIPLETCLIAGNEMVDAAMIVSNWAKEFELPGYDKDAHTGLLRHLMVRQSFNTG 215

Query: 113 QSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
           +    +  T      LD A RE   R+       K  + L     +     DR   +E  
Sbjct: 216 EIMLGVFATASPDGELDRAVRELISRIERNAPQVKSVMWL-----ENNDWADRAQSEETH 270

Query: 172 TVAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGN 222
            + GR  IY ++         ++F Q N      +++  L   K      +++L+CG G 
Sbjct: 271 CLFGRDYIYDEMAGYRFRLWFDTFFQTNPRQAEVLVDEALKLGKPEAHEKMIDLFCGVGT 330

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           FSL  A     +  +EI + S+ +A+ N   N + N   +   +++    M  E     L
Sbjct: 331 FSLPFASRVKALAGIEIVESSIASAKRNAEDNGLVNTTFLAKDARKGIDQMLEEFGHPEL 390

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSILST-TH 339
                       + +DPPRSG     +  + +A P  I+Y+SCNPD+   D   L    +
Sbjct: 391 ------------LMLDPPRSGAGGKVMRRIGRAKPDRIVYVSCNPDTFATDCKELEPFGY 438

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +E +   D FP+T H+E   LL R
Sbjct: 439 QLESVQPVDMFPHTFHVELVALLTR 463


>gi|330685548|gb|EGG97194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis VCU121]
          Length = 453

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 16/161 (9%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + GD  +L+ YCG G  ++ +A +   V  VE+   ++  A  N   N + N   V   +
Sbjct: 305 LTGDEIVLDTYCGIGTIAIYMAENARHVYGVEVVPSAINDANQNATKNQLENTTFVCGKA 364

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
           +E     + E              R   + VDPPR G D+  +  +++  P  I+YISCN
Sbjct: 365 EEVILKWKAE------------GIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCN 412

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +  RD  IL+  + ++ +   D FP T H+E   L  RK
Sbjct: 413 PSTQQRDAHILNHQYDLKEITPVDMFPQTTHIETVALFERK 453


>gi|281492836|ref|YP_003354816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis
           subsp. lactis KF147]
 gi|281376488|gb|ADA65974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis
           subsp. lactis KF147]
          Length = 513

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           NV   E V A        +++ YCG G     +A+    V  ++I   S+  AR N    
Sbjct: 316 NVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRL 375

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N         E  +A R    +N+        +R   + VDPPR+GLDDA +  +  
Sbjct: 376 GLKNCHY------EIGKAERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITK 423

Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +P   ++Y+SCN  +L +DL +L+  + +E +   D FP+T   E  V L ++
Sbjct: 424 FPPEKMVYVSCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKR 476


>gi|225388648|ref|ZP_03758372.1| hypothetical protein CLOSTASPAR_02384 [Clostridium asparagiforme
           DSM 15981]
 gi|225045246|gb|EEG55492.1| hypothetical protein CLOSTASPAR_02384 [Clostridium asparagiforme
           DSM 15981]
          Length = 467

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 31/267 (11%)

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANKTKI 160
           +D +T+   + + T +    +   W+E  +      R    LH     +  + ++++T +
Sbjct: 213 VDLVTTTQTEYLGTDMQEDQVLGGWKERLLGLELEGRFAGILHTLNDSLADVVQSDRTDV 272

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
              +DY  E L      L +R    SF Q N+ +   +L  +  +  G   D  + +LY 
Sbjct: 273 LYGQDYFYEELL----GLRFRISPFSFFQTNS-LGAEVLYDMARSYVGETKDKVVFDLYS 327

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  + +LA    +V+ VEI + +VEAAR N   N + N         EF         
Sbjct: 328 GTGTIAQILAPVAKKVVGVEIVEEAVEAARMNAKLNGLENC--------EFLAG------ 373

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
            + LK ID    +   I +DPPR G+    +  +  +    ++YISC P SL RDL +L 
Sbjct: 374 -DVLKVIDEIQDKPDLIMLDPPRDGIHPKALNKIIEFGVERMVYISCKPTSLARDLVVLQ 432

Query: 337 T-THTIERLALFDQFPYTRHMECGVLL 362
              + +E+    D FP T ++E  +++
Sbjct: 433 ERGYRVEKGGAVDMFPGTGNVEVVIMM 459


>gi|71420165|ref|XP_811388.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70876047|gb|EAN89537.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 568

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 27/196 (13%)

Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N +G+ + + E    A  G +  LL+L CG G   L LA+H  RV+ +E+ + +
Sbjct: 375 TSFFQVNTSGMELLLCETAKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESA 434

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV---DPP 300
           V  AR N   N + NV       +     +      N L + D      KT  V   DPP
Sbjct: 435 VNDARQNAKRNDIANVTFCSGRVEHLLPDI-----INSLPEED------KTDIVAILDPP 483

Query: 301 RSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT-------IERLALF--D 348
           R+G+    +  ++  P I   +YISC   +L RD   L+ + T        E +A F  D
Sbjct: 484 RAGVTPTVLKWIRGTPTIRRVVYISCEQKALERDCPSLTKSTTKAYRGLPFELVASFAVD 543

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   +L R
Sbjct: 544 LFPHTPHVEMVAVLAR 559


>gi|319654160|ref|ZP_08008249.1| hypothetical protein HMPREF1013_04869 [Bacillus sp. 2_A_57_CT2]
 gi|317394094|gb|EFV74843.1| hypothetical protein HMPREF1013_04869 [Bacillus sp. 2_A_57_CT2]
          Length = 460

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 16/150 (10%)

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A     +  ++I + S+E A+ N   + + + + V   ++E+     ++
Sbjct: 321 YCGVGTIGLWVADQAAEIRGMDIIRESIEDAKKNADRHGIKHAQYVVGKAEEWLPKWTKD 380

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYISCNPDSLCRDLS 333
                        +R   I VDPPR+GLD     T+  VQ    ++Y+SCNP +L +D+S
Sbjct: 381 ------------GWRPDVIIVDPPRTGLDHQLLKTILKVQPK-KVVYVSCNPSTLAKDIS 427

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +LS  + +  +   D FP T H+E    LV
Sbjct: 428 VLSPKYKVIGIQPVDMFPQTAHVESVTQLV 457


>gi|115435048|ref|NP_001042282.1| Os01g0193600 [Oryza sativa Japonica Group]
 gi|9988445|dbj|BAB12711.1| putative RNA methyltransferase [Oryza sativa Japonica Group]
 gi|10934074|dbj|BAB16852.1| putative RNA methyltransferase [Oryza sativa Japonica Group]
 gi|113531813|dbj|BAF04196.1| Os01g0193600 [Oryza sativa Japonica Group]
 gi|215697095|dbj|BAG91089.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 557

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 34/215 (15%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           Y    +T   R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG G
Sbjct: 356 YGKPTITEMLRGLTFQISANSFFQTNTK-QADVLYKLIGESAGLKGDGSEIILDLFCGTG 414

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LAR    V   E+   ++  A+ N   N ++N   V+    +  +   +E     
Sbjct: 415 TIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFVQGDLNKINETFGKE----- 469

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338
               DI       I  DP R G+    +     V+A P I+Y+SCNP +  RDL  L   
Sbjct: 470 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 519

Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362
           H +E   L            D FP+T H+EC  +L
Sbjct: 520 HGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVL 554


>gi|328950985|ref|YP_004368320.1| (Uracil-5)-methyltransferase [Marinithermus hydrothermalis DSM
           14884]
 gi|328451309|gb|AEB12210.1| (Uracil-5)-methyltransferase [Marinithermus hydrothermalis DSM
           14884]
          Length = 408

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 20/154 (12%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +ELY G G  S  LA  FD ++AVE+++ +++  + +     + NV+  R  +       
Sbjct: 272 VELYAGGGVLSFHLAAAFDEIVAVELSRAAIQKGQADARRLGLPNVRFHRGDA------- 324

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
              RE  R    D+       + VDPPR+GL    V  +++A PH ILYISC+P +  RD
Sbjct: 325 ---RELVRFAPADL-------VAVDPPRAGLAPEVVRTLLEARPHQILYISCDPATWARD 374

Query: 332 LSILSTTHTIERLA-LFDQFPYTRHMECGVLLVR 364
           +  L       R A  +D +P+T H+E   LLVR
Sbjct: 375 VKRLVAGGYRLRFARPYDFYPFTHHVEVLSLLVR 408


>gi|296451840|ref|ZP_06893559.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296879764|ref|ZP_06903738.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP07]
 gi|296259319|gb|EFH06195.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296429235|gb|EFH15108.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP07]
          Length = 452

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    
Sbjct: 309 VFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNMHNAEFYVGKAEEIVPK 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M RE +   +            + VDPPR G D+  +  +V   P  I+Y+SCNP +L R
Sbjct: 369 MYREGKTANV------------VVVDPPRKGCDEKVLETIVSMSPERIVYVSCNPSTLAR 416

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365
           DL  L+  H  + +     D FP++ H+E    ++++
Sbjct: 417 DLDYLN-VHGFKCVEAQPVDMFPHSTHVETVAKIIKQ 452


>gi|270294142|ref|ZP_06200344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20]
 gi|317478899|ref|ZP_07938047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           4_1_36]
 gi|270275609|gb|EFA21469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20]
 gi|316904933|gb|EFV26739.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           4_1_36]
          Length = 473

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 24/203 (11%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221
           T  G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G
Sbjct: 279 TFKGKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVARNFAGLTGNELVYDLYTGTG 337

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  +++H  +V+ +E    ++E A+ N   N + N        K+    M  +   N+
Sbjct: 338 TIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKD----MLTQDFINQ 393

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTH 339
               D+       I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L   +
Sbjct: 394 YGRPDV-------IITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDAKY 446

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
            ++ +   D FP+T H+E  VLL
Sbjct: 447 KVKAVQPVDMFPHTHHVENVVLL 469


>gi|222617909|gb|EEE54041.1| hypothetical protein OsJ_00721 [Oryza sativa Japonica Group]
          Length = 558

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 93/215 (43%), Gaps = 34/215 (15%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           Y    +T   R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG G
Sbjct: 357 YGKPTITEMLRGLTFQISANSFFQTNTK-QADVLYKLIGESAGLKGDGSEIILDLFCGTG 415

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LAR    V   E+   ++  A+ N   N ++N   V+    +  +   +E     
Sbjct: 416 TIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFVQGDLNKINETFGKE----- 470

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTT 338
               DI       I  DP R G+    +     V+A P I+Y+SCNP +  RDL  L   
Sbjct: 471 FPKPDI-------IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYLC-- 520

Query: 339 HTIERLAL-----------FDQFPYTRHMECGVLL 362
           H +E   L            D FP+T H+EC  +L
Sbjct: 521 HGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVL 555


>gi|170017687|ref|YP_001728606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum
           KM20]
 gi|169804544|gb|ACA83162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum
           KM20]
          Length = 473

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 21/187 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N      +  + LAA K G++    +++ Y G G  +L +A    +V  VE+ +
Sbjct: 301 NSFYQINPQTTAVL--YTLAAEKAGLKPTDVVVDAYSGIGTITLSIADQVAKVYGVEVVE 358

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A  N   NH++NV+ V   + E            ++        +   +FVDPPR
Sbjct: 359 DAVLDAEKNAQNNHIDNVEFVTADAPE------------QMTQWAADGLKPDVVFVDPPR 406

Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYTRHME 357
            GL +  +  V A      +YISCNP +L RD + IL+    I+  +   DQFP T H+E
Sbjct: 407 KGLTNELISAVSAMQPKTFVYISCNPATLARDTVQILAEGFHIDGPIQPIDQFPQTTHVE 466

Query: 358 CGVLLVR 364
             ++  R
Sbjct: 467 SVLIFKR 473


>gi|29828931|ref|NP_823565.1| RNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|50401776|sp|Q93HB4|Y2389_STRAW RecName: Full=Uncharacterized RNA methyltransferase SAV_2389
 gi|15824109|dbj|BAB69275.1| putative methyltransferase [Streptomyces avermitilis]
 gi|29606036|dbj|BAC70100.1| putative RNA methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 433

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER    GRT  YR     F Q +      +++ V+      +GD+ L+LYCG G 
Sbjct: 241 RAFVRERAD--GRT--YRVGSGGFWQVHPMAADTLVKAVMQGLLPRKGDMALDLYCGVGL 296

Query: 223 FSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA R  D+  VL +E  K +VE AR+N+AA      + VR+   +    + R    
Sbjct: 297 FAGALADRLGDKGAVLGIESGKRAVEDARHNLAA-----FERVRIEQGKVEAVLPR---- 347

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
             + ++D+       I +DPPR+G    TV  + +     I Y++C+P +L RDL     
Sbjct: 348 TGITEVDL-------IVLDPPRAGAGKKTVEQLVSLGARKIAYVACDPAALARDLGYFRD 400

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + +  L  FD FP T H+EC  +L
Sbjct: 401 GGYKVRTLRAFDLFPMTHHVECVAIL 426


>gi|317498282|ref|ZP_07956581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894491|gb|EFV16674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 454

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 39/245 (15%)

Query: 137 RLRDALHARKYQIQLIG-------------RANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           +LRDAL       ++IG             +A+K  I   +DY  E +      L ++  
Sbjct: 227 KLRDALLELPLSGKIIGILHTTNDSLADVVQADKIDILYGQDYFYEEIL----GLKFKIS 282

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             SF Q N  +   +L        G   D  + +LY G G  + +LA    +V+ VEI +
Sbjct: 283 PFSFFQTNT-LGAEVLYKTARDFVGETKDKVIFDLYSGTGTIAQMLAPVAKKVVGVEIVE 341

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +VEAA+ N   N ++N + +     +    +  + +F               I +DPPR
Sbjct: 342 EAVEAAKVNAELNGLDNCEFIAGDVLKVVDELEDKPDF---------------IVLDPPR 386

Query: 302 SGLDDATV-GMVQAY--PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357
            G+    +  ++ +Y    +LYISC P SL RDL IL+   + + +    DQFP T H+E
Sbjct: 387 DGIHPKAIQKIIDSYRCERMLYISCKPTSLARDLEILADAGYKVIKATAVDQFPNTVHIE 446

Query: 358 CGVLL 362
              LL
Sbjct: 447 TICLL 451


>gi|218187673|gb|EEC70100.1| hypothetical protein OsI_00745 [Oryza sativa Indica Group]
          Length = 624

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 90/205 (43%), Gaps = 34/205 (16%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHF 231
           R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG G   L LAR  
Sbjct: 433 RGLTFQISANSFFQTNTK-QADVLYKLIGESAGLKGDGSEIILDLFCGTGTIGLTLARRA 491

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V   E+   ++  A+ N   N ++N   V+    +  +   +E         DI    
Sbjct: 492 KHVYGYEVVPEAIADAKKNAKLNGISNATFVQGDLNKINETFGKE-----FPKPDI---- 542

Query: 292 FKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTTHTIERLAL-- 346
              I  DP R G+    +     V+A P I+Y+SCNP +  RDL  L   H +E   L  
Sbjct: 543 ---IISDPNRPGMHMKLIKWLLEVKA-PRIVYVSCNPATCARDLDYL--CHGVEEKDLKG 596

Query: 347 ---------FDQFPYTRHMECGVLL 362
                     D FP+T H+EC  +L
Sbjct: 597 CYELKTVIPVDMFPHTPHIECICVL 621


>gi|327299650|ref|XP_003234518.1| tRNA(m5U54)methyltransferase [Trichophyton rubrum CBS 118892]
 gi|326463412|gb|EGD88865.1| tRNA(m5U54)methyltransferase [Trichophyton rubrum CBS 118892]
          Length = 545

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 20/159 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ YCG+G F++VL+  F   L +++A  S++ AR N   ++V N       +      
Sbjct: 393 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAAL--- 449

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+   +Y+   + +DPPR G D   +  + AY    +LY+SCN  +  R
Sbjct: 450 ---------FKDVPYPAYQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 499

Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 500 DVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 538


>gi|312898459|ref|ZP_07757849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera
           micronuciformis F0359]
 gi|310620378|gb|EFQ03948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera
           micronuciformis F0359]
          Length = 460

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 159/392 (40%), Gaps = 66/392 (16%)

Query: 10  YEQQLAEK-------VDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           YE QLAEK       V+R+ ++     +P L     +P  YR + +  +  D   L+   
Sbjct: 95  YEGQLAEKRQQVQDAVERIGKLKDVPVLPTLGA--DDPWAYRNKMQLPVGGDKRSLHIGC 152

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQI-----DYLTS--- 112
           F +++   + ID          A  I+      + P++R   K ++I     D  T    
Sbjct: 153 FAEKSHRIIDID----------ACPIQKGGNNEIIPVVRQWMKEYKIPAYDEDKGTGMIR 202

Query: 113 --------QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANK 157
                    S + +V ++    +    +E    LR  +      IQ I          NK
Sbjct: 203 HIMGRTGVHSGEIMVCIVTAVPMVPHMKELVQMLRKDVPGLTSVIQNINSRHTNVILGNK 262

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLE 215
           TK+      + + +      L +R    SF Q N+     + +  L  A  KG +  +++
Sbjct: 263 TKVIYGSPTISDSIG----DLSFRISAQSFFQVNSEQAQKLYDTALSYADLKGNE-TVVD 317

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           +YCG G  +L LA        +EI +P++  A  N   N V N   +   +         
Sbjct: 318 VYCGTGTITLFLAERAKFAYGIEIVEPAIRDAVKNARDNGVKNAHFMCGDAA-------- 369

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                +L ++     +   I +DPPR+G ++  +  + +     ++Y+SCNP +L RDL+
Sbjct: 370 ----YKLPELLRSGVKPDVIVIDPPRAGCEEKVLNAIASVRPKRVVYVSCNPATLARDLA 425

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            + T  +  +++   D FP T H+E   L+ R
Sbjct: 426 YMKTRGYETQKVQPVDMFPQTHHVETACLMSR 457


>gi|302541981|ref|ZP_07294323.1| putative tRNA (Uracil-5-)-methyltransferase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459599|gb|EFL22692.1| putative tRNA (Uracil-5-)-methyltransferase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 447

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 29/212 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER   A RT  +R  E  F Q +      ++E V+      +GD  L+LYCG G 
Sbjct: 255 RPFVRER--AADRT--WRVGEGGFWQVHPKAADLLVEAVMQGLMPRKGDTALDLYCGVGL 310

Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  L         VL +E +K + E AR+N+      ++  VR+   +  Q + R    
Sbjct: 311 FAGALGERVGERGAVLGIESSKRAAEDARHNL-----QDLDRVRIEHGKVEQVLPR---- 361

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
             + + D+       I +DPPR+G    TV  + +     I Y++C+P +L RDL+    
Sbjct: 362 TGITEADL-------IVLDPPRAGAGKETVAHLASLGARRIAYVACDPAALARDLAYFHD 414

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
             +   RL  FD FP T H+EC  + V +P+G
Sbjct: 415 AGYAPRRLRAFDLFPVTHHVEC--VAVLEPAG 444


>gi|159897144|ref|YP_001543391.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890183|gb|ABX03263.1| RNA methyltransferase, TrmA family [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 423

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 149/349 (42%), Gaps = 71/349 (20%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLI----NALMIE--MM 91
            EP HYR  A  H+  DG                R+ ++  G   I      L+I+  + 
Sbjct: 123 GEPWHYRSVARVHV--DGQ---------------RVGFYAAGGRQIVEFDQCLIIDPRLN 165

Query: 92  ATI-RLEPLLR-AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           ATI RL+PLL    L +I    S +D  I   +  +    AWR  A R   A        
Sbjct: 166 ATIERLKPLLPLIGLREISLRLSTTDGTIHGHLIGQG-QSAWRSWARRWMSA------DA 218

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPN---AGINVHM 198
            + G ++ T+        +  + +AG   +Y Q+ +        SF Q N   A   +  
Sbjct: 219 TIAGVSSATR--------EGWMALAGAEYLYEQLGDVRLRIAPTSFFQANVERARAVLQQ 270

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E  L      +  LL+ +CG G F L LA +      +E    ++  A+ +  AN ++N
Sbjct: 271 IECFLPLNNTTR--LLDGFCGVGTFLLPLAHNIGHGWGIEEHPAAIRDAQASAKANQLSN 328

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH 317
           V +         +  + E    +LK       +F    VDPPR G++ A +  ++ A P 
Sbjct: 329 VTL---------KTGKVEAILPQLKQ------QFDLAIVDPPRRGVEPAALNALIAAQPT 373

Query: 318 -ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            I Y+SC+P +L RD+ +L +  +TI+     D FP T H+E  VLL +
Sbjct: 374 MIAYVSCHPGTLARDIKLLQAGGYTIQHAQPHDFFPQTSHVESLVLLSK 422


>gi|315282728|ref|ZP_07871069.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
           S4-120]
 gi|313613628|gb|EFR87431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
           S4-120]
          Length = 453

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   A
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|291548601|emb|CBL24863.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14]
          Length = 567

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 13/166 (7%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  + +LYCG G  SL LA+   +V  VEI   +++ A+ N   N ++N +     +
Sbjct: 305 LKGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIDDAKENAKINAIDNAEFFVGKA 364

Query: 267 KEFTQA--MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYIS 322
           +E         ERE N        +     I VDPPR G D+  +  +V+  P  ++Y+S
Sbjct: 365 EEVLPEYYAEYEREHNG------KTAHADVIVVDPPRKGCDETLLETIVKMQPEKVVYVS 418

Query: 323 CNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           C+  +L RDL  L +  + I      DQFP + H+E  VLL  K +
Sbjct: 419 CDSATLARDLKYLCANGYEIRMCRGVDQFPQSVHVETVVLLSHKKA 464


>gi|326407755|gb|ADZ64826.1| uracil-5-23S rRNA methyltransferase RumA [Lactococcus lactis subsp.
           lactis CV56]
          Length = 513

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           NV   E V A        +++ YCG G     +A+    V  ++I   S+  AR N    
Sbjct: 316 NVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRL 375

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N         E  +A R    +N+        +R   + VDPPR+GLDDA +  +  
Sbjct: 376 GLKNCHY------EIGKAERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITK 423

Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +P   ++Y+SCN  +L +DL +L+  + +E +   D FP+T   E  V L ++
Sbjct: 424 FPPEKMVYVSCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKR 476


>gi|255505413|ref|ZP_05345917.3| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
 gi|255268319|gb|EET61524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
          Length = 466

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 78/152 (51%), Gaps = 16/152 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAM 273
           +LYCG G  SL LA+   +V  VE+   +++ A  N   N + N +     ++E   +  
Sbjct: 324 DLYCGIGTISLFLAQQARQVYGVEVIPQAIDDACRNAKINGIANAQFFVGRAEEILPEVY 383

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRD 331
           RR R         IH+   + I VDPPR G DD+ +  +++  P  ++Y+SC+  +L RD
Sbjct: 384 RRHR---------IHA---EVIVVDPPRKGCDDSLLSTIIEMQPERVVYVSCDSATLARD 431

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           L IL    + ++R    DQFP + H+E    L
Sbjct: 432 LRILCDNGYALKRCRAVDQFPMSVHVETAAQL 463


>gi|296270254|ref|YP_003652886.1| deoxyribonuclease/rho motif-related TRAM [Thermobispora bispora DSM
           43833]
 gi|296093041|gb|ADG88993.1| deoxyribonuclease/rho motif-related TRAM [Thermobispora bispora DSM
           43833]
          Length = 407

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 27/194 (13%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVL 235
           +R   + F Q + G    +L  VL   +   G+  L+LYCG G F+  L         VL
Sbjct: 233 FRVTGSGFWQIHPGAPETLLRTVLELGRPAPGERALDLYCGAGLFAAGLGEAVGPEGSVL 292

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E    +V  AR+N+    + N +I                E  R+++    + R   +
Sbjct: 293 GIESDPQAVRDARWNL--RDLPNTRI----------------ERGRVEEALGAAARADLV 334

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE--RLALFDQFP 351
             DPPR+GL    V  +        +Y+SC+P ++ RD++ L T H  E   L  FDQ+P
Sbjct: 335 VADPPRTGLGREVVERIAGLGPSRFVYVSCDPATMSRDIAWL-TPHGYELAELRAFDQYP 393

Query: 352 YTRHMECGVLLVRK 365
            T H+EC  LLVR+
Sbjct: 394 MTHHVECVALLVRR 407


>gi|326204866|ref|ZP_08194719.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM
           2782]
 gi|325984915|gb|EGD45758.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM
           2782]
          Length = 462

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 19/156 (12%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + +LYCG G  SL L++    V+ VE+   ++  A+ N   N V+NV+ +   
Sbjct: 308 GLSGNETVFDLYCGIGTISLFLSQKAKHVVGVEVVADAICDAKRNAEINGVSNVEFLVGE 367

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISC 323
           +++             + ++     +   + VDPPR G D   +  +V+  P  I+Y+SC
Sbjct: 368 AEKV------------IPELYAQGVKADVVVVDPPRKGCDQLLLNTLVEMQPQRIVYVSC 415

Query: 324 NPDSLCRDLSILSTTHTIE--RLALFDQFPYTRHME 357
           NP +L RDL  L T H  E   +   D FP+T H+E
Sbjct: 416 NPSTLARDLKYL-TEHGFEAKEVQPVDMFPWTGHVE 450


>gi|160879797|ref|YP_001558765.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160428463|gb|ABX42026.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
           ISDg]
          Length = 554

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLA 236
           ++R    SF Q N  +    L  +     G+ G   +++ YCG G   LV +++   VL 
Sbjct: 375 VFRISSKSFYQVNP-VQTERLYQLAIKAAGLTGKERVIDAYCGIGTIGLVASKNAKEVLG 433

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE+ K +++ A  N   N + N       + EF  AM  + E            +   + 
Sbjct: 434 VEVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAMAEKGE------------KADVVI 481

Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYT 353
           +DPPR+G  +  +  V++     ++YISCNP +L RDL   +   + ++     D FP+T
Sbjct: 482 MDPPRAGSTEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKKGYQVKEAWPVDMFPWT 541

Query: 354 RHMECGVLLVR 364
            H+E   LL +
Sbjct: 542 GHVETVCLLYK 552


>gi|126654800|ref|ZP_01726334.1| 23S rRNA methyltransferase/RumA [Cyanothece sp. CCY0110]
 gi|126623535|gb|EAZ94239.1| 23S rRNA methyltransferase/RumA [Cyanothece sp. CCY0110]
          Length = 455

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 19/155 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L++ YCG G F+L LA+   + + +E  K +VE A  N   N VNNV+  + +     +
Sbjct: 311 NLIDAYCGVGTFTLPLAQQVTQAIGIESNKKAVEQAINNSKINGVNNVQFYQGT----VE 366

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
            M    +F+   DI         + +DPPR G D   +  ++    P I+YISC P +L 
Sbjct: 367 TMLPFLDFS--PDI---------VVLDPPRKGCDRRVIDTLKEMGSPVIIYISCQPSTLA 415

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362
           RDL  L     +T++ +   D FP T H+E   L+
Sbjct: 416 RDLQKLCQQDLYTLQWIQPIDFFPQTAHIESMALI 450


>gi|257468239|ref|ZP_05632335.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium ulcerans ATCC
           49185]
 gi|317062521|ref|ZP_07927006.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium ulcerans ATCC
           49185]
 gi|313688197|gb|EFS25032.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium ulcerans ATCC
           49185]
          Length = 287

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 15/150 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++ Y G G  +++L++   +V A+E+ + +          N + N++ +  + ++   
Sbjct: 144 NVVDAYSGTGTLAMILSKKAKKVFAIELVQSATNDGIKTAKENKIENIEFINGAVED--- 200

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329
                    RL ++     +   I  DPPR G+D++++  V       I+YISCNP +  
Sbjct: 201 ---------RLPELIKKGEKVDAIIFDPPRKGIDESSLLKVAESNIKEIVYISCNPSTFA 251

Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMEC 358
           RD  ILS   +T+E++   D FP T H E 
Sbjct: 252 RDAEILSRQGYTLEKVQPVDMFPGTAHTEV 281


>gi|303314227|ref|XP_003067122.1| tRNA -methyltransferase family protein [Coccidioides posadasii C735
           delta SOWgp]
 gi|240106790|gb|EER24977.1| tRNA -methyltransferase family protein [Coccidioides posadasii C735
           delta SOWgp]
 gi|320037383|gb|EFW19320.1| tRNA(m5U54)methyltransferase [Coccidioides posadasii str. Silveira]
          Length = 578

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 113/279 (40%), Gaps = 65/279 (23%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDR-----------------DYVDERLTVAGRTLI 179
           R+ D++H  K    L+ R N  +I  D+                 DY++E+  +  +  I
Sbjct: 309 RVLDSVHQFKAGATLLVRENTRRIPRDKVEENATEKKGVIRIDHPDYIEEKSYITDQKGI 368

Query: 180 ---------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----------LLELYCGN 220
                    +R +  +F Q N  I     ++V         D          LL+ YCG+
Sbjct: 369 SSEYIDDYLFRNVAGTFFQNNNSILSPFTQYVRERAVPASADSDPSKPKLKYLLDAYCGS 428

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G F++ L+  F   L V++A  S+E+AR N   N + N       + +  Q         
Sbjct: 429 GLFTIALSTVFRSSLGVDVAAGSIESARENARLNKLKNTGFAAADAAKLFQ--------- 479

Query: 281 RLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-- 335
                D+     +T+ V DPPR G D   +  + A+    ++Y+SCN  +  RD+ ++  
Sbjct: 480 -----DVPYPPHQTLLVIDPPRKGCDTNFLKQLLAFGPARVVYVSCNVHTQARDVGVMVR 534

Query: 336 ----------STTHTIERLALFDQFPYTRHMECGVLLVR 364
                     S  + IE +  FD FP T H+E   +L R
Sbjct: 535 GDTGDGSGKSSVRYEIESIKGFDFFPQTGHVESVAVLNR 573


>gi|283796600|ref|ZP_06345753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
 gi|291076020|gb|EFE13384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
          Length = 475

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 19/191 (9%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237
           YR    SF Q N  +    L        G+ GD  + +LYCG G  SL LA+   +V  V
Sbjct: 295 YRISPLSFYQVNP-VQTERLYGTALEYAGLTGDETVWDLYCGIGTISLFLAQKAKQVYGV 353

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL-KDIDIHSYRFKTIF 296
           EI   +++ AR N   N + NV+     ++E    +  + E N++  D+         I 
Sbjct: 354 EIVPQAIDDARGNAEINGMENVEFFVGKAEE---VLPEQYEKNQVYADV---------IV 401

Query: 297 VDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYT 353
           VDPPR G D+  +  +V+  P  ++Y+SC+  +L RD+  L    + ++R+   D FP +
Sbjct: 402 VDPPRKGCDEKCLETIVRMGPKKVVYVSCDSATLARDVKYLGEKGYEVKRVRCVDMFPQS 461

Query: 354 RHMECGVLLVR 364
            H+E   LL +
Sbjct: 462 GHVETAALLTQ 472


>gi|332521493|ref|ZP_08397947.1| RNA methyltransferase, TrmA family [Lacinutrix algicola 5H-3-7-4]
 gi|332042892|gb|EGI79091.1| RNA methyltransferase, TrmA family [Lacinutrix algicola 5H-3-7-4]
          Length = 470

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 34/227 (14%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLA 204
           G+AN      D  Y  E +   G   I+ ++E         SF Q N+    + L  +  
Sbjct: 264 GKAN------DTIYDQEVICYKGNDHIFEEMEGLKFKINAKSFYQTNSK-QAYELYKLTR 316

Query: 205 ATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              G++GD L  +LY G G  +  +A+   +V+ VE    ++ AA+ N   N ++NV   
Sbjct: 317 TFAGLEGDELVYDLYTGTGTIAQFVAKQAKKVVGVEAVPDAITAAKENAQLNGIDNVSF- 375

Query: 263 RMSSKEFTQAMRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-I 318
                 F   M+    +EF     I+ H  +   I  DPPR G+  D    ++   P  +
Sbjct: 376 ------FVGDMKNVFNQEF-----IETHG-QPDVIITDPPRDGMHKDVVKQILNIAPQKV 423

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +Y+SCN  +  RDL ++   + + ++   D FP T H+E  VLL ++
Sbjct: 424 VYVSCNSATQARDLQLMDAMYKVTKVQAVDMFPQTFHVENIVLLEKR 470


>gi|325694948|gb|EGD36853.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK150]
          Length = 456

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+   +V  VE+   +VE ++ N A N + N   V   ++E  Q 
Sbjct: 308 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQ- 366

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328
                  N LK+      +   I VDPPR GL +    A+V M    P I YISCN  ++
Sbjct: 367 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSM--EPPKITYISCNVATM 413

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +     + ++++   D FP T H+E   LLVR
Sbjct: 414 ARDIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 450


>gi|311067291|ref|YP_003972214.1| putative RNA methyltransferase [Bacillus atrophaeus 1942]
 gi|310867808|gb|ADP31283.1| putative RNA methyltransferase [Bacillus atrophaeus 1942]
          Length = 466

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 163/389 (41%), Gaps = 52/389 (13%)

Query: 10  YEQQLAEKVDRLRQMM---LAFQVPNLQIFRS----EPIHYRMRAEFHIWHD-------- 54
           Y QQL EK D + Q +     F+V ++ I  +     P +YR +++F I           
Sbjct: 98  YTQQLREKRDIVIQSLERHTKFKVEDMNIKETIGMDNPWNYRNKSQFQIGRSQSGSIIAG 157

Query: 55  --GDDLYHIMFDQQTKERMRIDYFMPGSL--LINALMIEMMATIRLEPLLRAKLFQIDYL 110
             G D ++I+  +  K +        G +  ++    + +    + +  +R  + ++ + 
Sbjct: 158 LYGMDSHNIVPIKDCKVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRTIVTRVGFE 217

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
           T +     V LI  +       E    ++  L   K  IQ +  A  + I     + D+ 
Sbjct: 218 TGEVQ---VVLITSKETLPHKEEIVQAIQKRLPEVKSIIQNVNGAKTSVI-----FGDKT 269

Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
             +AG T+I   + +        +F Q N    V + + V  A + + G   +++ YCG 
Sbjct: 270 KALAGNTVIQEVLGDVSFELSARAFFQLNPEQTVKLYDEVKKAAQ-LTGKEKVVDAYCGV 328

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + +A     V  +++ K S++ A+ N   + + N   V  +++ +     +E    
Sbjct: 329 GTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMTNATYVTGTAEHWLPKWTKE---- 384

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338
                    +R   + VDPPR+G D   +  ++       +Y+SCNP +L +DL  LS  
Sbjct: 385 --------GFRPDVVIVDPPRTGCDTTFLDTIKKVKPKRFVYVSCNPSTLAKDLQALSKD 436

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           + +E +   D FP T H+E    LV K S
Sbjct: 437 YRVEYIQPVDMFPQTAHVEAVAQLVLKSS 465


>gi|157107434|ref|XP_001649776.1| RNA m5u methyltransferase [Aedes aegypti]
 gi|108884062|gb|EAT48287.1| RNA m5u methyltransferase [Aedes aegypti]
          Length = 625

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 85/169 (50%), Gaps = 20/169 (11%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  +L++ CG G   L  A+H  +VL VE+   ++E A+YN   N ++N K+   ++ + 
Sbjct: 429 QTSVLDICCGTGTIGLCFAKHCKQVLGVELIPQAIEDAKYNAELNKIDNCKLYAGNADDL 488

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPD 326
             ++        +++ +I +       VDPPR+GL   ++  +   +    ++Y+SC+P+
Sbjct: 489 ITSL--------IRNANIQAGENLVAIVDPPRAGLHVRSITQLRNARGLNRLIYVSCSPN 540

Query: 327 SLCRDL---------SILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           S  ++          ++  T   +++    D FP+T H+E  +L  R+P
Sbjct: 541 SAVKNWVDLMRPCSKAMRGTPFVLKKAIPVDLFPHTPHVELVLLFEREP 589


>gi|299771548|ref|YP_003733574.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter sp. DR1]
 gi|298701636|gb|ADI92201.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter sp. DR1]
          Length = 463

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 29/215 (13%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           I R +  K  L   Y  ER  V      +  ++  FTQ NA +N  M++      +   G
Sbjct: 256 IHRIDDEKGALRLHYALERFNV---NFAFSPLD--FTQVNATVNEQMVQLACELLQLQPG 310

Query: 212 D-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           + +L+L+CG GNFSL LAR      +V+ VE ++  V+ A  N   N +       + + 
Sbjct: 311 EKVLDLFCGLGNFSLPLARCVGESGQVVGVEGSEEMVQRATANAKCNSL-------VQAT 363

Query: 268 EFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISC 323
            F+Q +         KD   HS+    F  + +DPPR+G  +    +       I+Y+SC
Sbjct: 364 FFSQDL--------TKDFSHHSWANQGFDALLIDPPRAGAYEIMQYVSNFGAKRIVYVSC 415

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           NP +L RD  +L    + +++ A+ D F +T H+E
Sbjct: 416 NPATLARDAGVLVQYGYQLKKAAVMDMFTHTEHVE 450


>gi|262280996|ref|ZP_06058779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257896|gb|EEY76631.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           calcoaceticus RUH2202]
          Length = 463

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242
           FTQ NA +N  M++      +   G+ +L+L+CG GNFSL LAR      +V+ VE ++ 
Sbjct: 286 FTQVNATVNEQMVQLACELLQLQSGEKVLDLFCGLGNFSLPLARCVGESGQVVGVEGSEE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+ A  N   N +       + +  F+Q +         KD   HS+    F  + +DP
Sbjct: 346 MVQRATANAKCNSL-------VQATFFSQDL--------TKDFSHHSWANQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           PR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ D F +T H+E
Sbjct: 391 PRAGAYEIMQYVSNFGAKRIVYVSCNPATLARDAGVLVQYGYQLKKAAVMDMFTHTEHVE 450


>gi|119174350|ref|XP_001239536.1| hypothetical protein CIMG_09157 [Coccidioides immitis RS]
          Length = 531

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 113/279 (40%), Gaps = 65/279 (23%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDR-----------------DYVDERLTVAGRTLI 179
           R+ D+LH  K    L+ R N  +I  D+                 DY++E+  +  +  I
Sbjct: 262 RVLDSLHQFKAGATLLVRENTRRIPRDKIEENATEKKDVIRIDHPDYIEEKSYITDQKGI 321

Query: 180 ---------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----------LLELYCGN 220
                    +R +  +F Q N  I     ++V         D          LL+ YCG+
Sbjct: 322 SSEYIDDYLFRNVAGTFFQNNNSILSPFTQYVRERALPASADSDPSKPKLKYLLDAYCGS 381

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G F++ L+  F   L V++A  S+E+AR N   N + N       + +  Q         
Sbjct: 382 GLFTIALSTVFRSSLGVDVAAGSIESARENARLNKLKNTGFAAADAAKLFQ--------- 432

Query: 281 RLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-- 335
                D+     +T+ V DPPR G D   +  + A+    ++Y+SCN  +  RD+ ++  
Sbjct: 433 -----DVPYPPDQTLLVIDPPRKGCDTNFLKQLLAFGPARVVYVSCNVHTQARDVGVMVR 487

Query: 336 ----------STTHTIERLALFDQFPYTRHMECGVLLVR 364
                     S  + IE +  FD FP T H+E   +L R
Sbjct: 488 GDTGDGSGKSSVRYEIESIKGFDFFPQTGHVESVAVLNR 526


>gi|15674161|ref|NP_268336.1| hypothetical protein L37880 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|50401786|sp|Q9CDP0|YWFF_LACLA RecName: Full=Uncharacterized RNA methyltransferase ywfF
 gi|12725241|gb|AAK06277.1|AE006446_9 hypothetical protein L37880 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 513

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 14/173 (8%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           NV   E V A        +++ YCG G     +A+    V  ++I   S+  AR N    
Sbjct: 316 NVLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRL 375

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N         E  +A R    +N+        +R   + VDPPR+GLDDA +  +  
Sbjct: 376 GLKNCHY------EIGKAERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITK 423

Query: 315 YP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +P   ++Y+SCN  +L +DL +L+  + +E +   D FP+T   E  V L ++
Sbjct: 424 FPPEKMVYVSCNVSTLAKDLVVLANFYKVEYIQSVDMFPHTARTEAVVKLTKR 476


>gi|295092515|emb|CBK78622.1| 23S rRNA m(5)U-1939 methyltransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 475

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 19/191 (9%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237
           YR    SF Q N  +    L        G+ GD  + +LYCG G  SL LA+   +V  V
Sbjct: 295 YRISPLSFYQVNP-VQTERLYGTALEYAGLTGDETVWDLYCGIGTISLFLAQKAKQVYGV 353

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL-KDIDIHSYRFKTIF 296
           EI   +++ AR N   N + NV+     ++E    +  + E N++  D+         I 
Sbjct: 354 EIVPQAIDDARGNAEINGMENVEFFVGKAEE---VLPEQYEKNQVYADV---------IV 401

Query: 297 VDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYT 353
           VDPPR G D+  +  +V+  P  ++Y+SC+  +L RD+  L    + ++R+   D FP +
Sbjct: 402 VDPPRKGCDEKCLETIVRMGPKKVVYVSCDSATLARDVKYLGEKGYEVKRVRCVDMFPQS 461

Query: 354 RHMECGVLLVR 364
            H+E   LL +
Sbjct: 462 GHVETAALLTQ 472


>gi|295133700|ref|YP_003584376.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87]
 gi|294981715|gb|ADF52180.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87]
          Length = 469

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 26/216 (12%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +   GR  I+ ++E         SF Q N+    + L  +     G++G+ L
Sbjct: 267 DTIYDQEVICYKGRDHIFEEMEGLTFKINAKSFYQTNSA-QAYELYKITREFAGLKGEEL 325

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271
             +LY G G  +  +A++   V+ VE    ++  A  N   N + N K      K+ FTQ
Sbjct: 326 VYDLYTGTGTIAQFVAKNAKEVIGVEAVPEAISDAIENAKRNGITNTKFFAGDMKKVFTQ 385

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329
                        I+ H +    I  DPPR G+  D    ++   P  I+Y+SCN  +  
Sbjct: 386 NF-----------INKHGHP-DVIITDPPRDGMHKDVVAQIINILPKKIVYVSCNSATQA 433

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL++L   + + ++   D FP T H+E  V L RK
Sbjct: 434 RDLALLDEYYKVTKVQPVDMFPQTFHVENVVCLERK 469


>gi|18311096|ref|NP_563030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens str. 13]
 gi|168212849|ref|ZP_02638474.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str.
           F4969]
 gi|50401771|sp|Q8XIK5|Y2114_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE2114
 gi|18145779|dbj|BAB81820.1| RNA methyltransferase-like protein [Clostridium perfringens str.
           13]
 gi|170715477|gb|EDT27659.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str.
           F4969]
          Length = 451

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + 
Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           ++ + +                I +DPPRSG+    +  V  +  P I+Y+SCNP +L  
Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L T  + IE+  L D FP T H+E  V L +K
Sbjct: 416 DLKVLETKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451


>gi|329767656|ref|ZP_08259176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
           M341]
 gi|328839083|gb|EGF88669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
           M341]
          Length = 451

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 25/219 (11%)

Query: 160 ICLDRDYV---DERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKG 208
           I  D+D++    E LT+ G   I  +I          SF Q N      + + V+     
Sbjct: 245 ITNDKDHLVMGTESLTLYGSDYIVEKIGEIKYELSAKSFFQLNPPATKKLYDKVVEFAAL 304

Query: 209 IQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            + D+ L+ +CG G     ++R+   V  V+I   +++ A  N+  N++ N   V   + 
Sbjct: 305 KETDVVLDAFCGVGTIGQYVSRNCKEVYGVDIIPAAIKDANDNVKLNNLTNCTYVAGDAN 364

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPD 326
           +     +++               F    VDPPR GL      ++      I+Y+SCNP 
Sbjct: 365 KIVPRWKKK------------GINFDVAIVDPPRVGLGPLAKNLLAVDAKKIVYVSCNPS 412

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +L RDL +L+  + I R+   D FP T  +E  V L+RK
Sbjct: 413 TLARDLKVLTRKYRIRRIQPVDMFPGTAAVEAVVELIRK 451


>gi|94990944|ref|YP_599044.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94544452|gb|ABF34500.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 451

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           Q  + ++  +          L  A+ +      ++  ++  +I      ++T+I   ++ 
Sbjct: 209 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           + E +   G  L  R    +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 265 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  A   +N          + +A + E    +    
Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|160889893|ref|ZP_02070896.1| hypothetical protein BACUNI_02324 [Bacteroides uniformis ATCC 8492]
 gi|156860885|gb|EDO54316.1| hypothetical protein BACUNI_02324 [Bacteroides uniformis ATCC 8492]
          Length = 473

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 24/203 (11%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221
           T  G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G
Sbjct: 279 TFKGKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVARNFAGLTGNELVYDLYTGTG 337

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  +++H  +V+ +E    ++E A+ N   N + N        K+    M  +   N+
Sbjct: 338 TIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKD----MLTQDFINQ 393

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTH 339
               D+       I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L   +
Sbjct: 394 YGRPDV-------IITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDAKY 446

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
            ++ +   D FP+T H+E  VLL
Sbjct: 447 KVKAVQPVDMFPHTHHVENVVLL 469


>gi|260890184|ref|ZP_05901447.1| hypothetical protein GCWU000323_01346 [Leptotrichia hofstadii
           F0254]
 gi|260860207|gb|EEX74707.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii
           F0254]
          Length = 476

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271
           +++ + G G  +++L+++  +V+ +E  + S  AA+     N + NV+ V     KE  +
Sbjct: 328 VIDAFSGTGTIAMMLSKNIKKVIGIESVESSTLAAKLTSYENSIQNVEFVNGKVEKELPK 387

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329
            ++RE         D+ +  F     DPPR G++++ +  V       I+YISCNP +  
Sbjct: 388 ILKRE---------DVGAIVF-----DPPRRGIEESALKSVVQNKIEKIVYISCNPATFA 433

Query: 330 RDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           RD+ IL+   + + ++   D FP T H+E   LL +
Sbjct: 434 RDVKILAENGYVLTKVTPVDMFPQTPHIEVVGLLYK 469


>gi|325124548|gb|ADY84071.1| 23S rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2]
          Length = 463

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242
           FTQ NA +N  M++      +   G+ +L+L+CG GNFSL LAR      +V+ VE ++ 
Sbjct: 286 FTQVNATVNEQMVQLACELLQLQPGEKVLDLFCGLGNFSLPLARCVGESGQVVGVEGSEE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+ A  N   N +       + +  F+Q +         KD   HS+    F  + +DP
Sbjct: 346 MVQRATANAKCNSL-------VQATFFSQDL--------TKDFSHHSWANQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           PR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ D F +T H+E
Sbjct: 391 PRAGAYEIMQYVSNFGAKRIVYVSCNPATLARDAGVLVQYGYQLKKAAVMDMFTHTEHVE 450


>gi|55981322|ref|YP_144619.1| RNA methyltransferase [Thermus thermophilus HB8]
 gi|55772735|dbj|BAD71176.1| probable RNA methyltransferase [Thermus thermophilus HB8]
          Length = 406

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 24/154 (15%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           LELY G+G FSL+L+  ++ V+AVEI+K +V     +       NV+ +RM +       
Sbjct: 270 LELYAGSGLFSLLLSPRYEEVVAVEISKEAVRRGEMDRKRLGAENVRFLRMDA------- 322

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD 331
              R+   L   D+       + VDPPR+GL  +    +++A P  ILY+SC+P +  RD
Sbjct: 323 ---RKAEALGAFDL-------VVVDPPRAGLPPEVRAYLLRARPREILYVSCDPATWARD 372

Query: 332 LSILSTTHTIERLAL---FDQFPYTRHMECGVLL 362
           +  L       RLA    +D FP+T H+E   LL
Sbjct: 373 VGAL--VQGGYRLAFARPYDFFPFTHHVEVLSLL 404


>gi|241668875|ref|ZP_04756453.1| 23S rRNA 5-methyluridine methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877407|ref|ZP_05250117.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843428|gb|EET21842.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 449

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 95/189 (50%), Gaps = 17/189 (8%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
           VAG  + +    N FTQ N  IN  M++  +   +  + D +++L+CG GNF+L ++++ 
Sbjct: 266 VAGINIGFEP--NDFTQVNNDINKKMIKRAIDLLEISENDSIIDLFCGLGNFTLPISQYA 323

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE  +  V  A+   A N+++NVK     +    ++   +  FN        ++ 
Sbjct: 324 KTVIGVEGEQTMVGRAKETAANNNISNVKFY---AANLFESFEDKEWFN--------NFE 372

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST--THTIERLALFD 348
           +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL     + +    + D
Sbjct: 373 YNKMLLDPPRAGAQEVCSNIEKFDVERIVYVSCDTATLARDAGILVNHKGYKLVSAGVMD 432

Query: 349 QFPYTRHME 357
            FP+T H+E
Sbjct: 433 MFPHTMHVE 441


>gi|224369754|ref|YP_002603918.1| TrmA [Desulfobacterium autotrophicum HRM2]
 gi|223692471|gb|ACN15754.1| TrmA [Desulfobacterium autotrophicum HRM2]
          Length = 462

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 24/215 (11%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           I   +  K+     ++ E+L   GR   +    NSF Q N       L  +++    + G
Sbjct: 265 IATGDYEKLLAGEQFIREKL---GR-FTFEISANSFFQTNTA-GAEQLYSLVSEYADLTG 319

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  +++LY G G   + L+    +V+ +EI + +V  A+ N A N ++N +      K+ 
Sbjct: 320 NETVVDLYSGTGTIPIWLSDRAKKVVGIEIVESAVVDAKKNAALNQIDNCEFFVGDIKDV 379

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
                       L  +D        + +DPPR G+    V  V A     I+Y+SCNP +
Sbjct: 380 ------------LPQLDATC---NVMIIDPPRVGMHKDVVAQVMAIAPKKIVYVSCNPAT 424

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           L RDL +L   + + ++   D FP+T H+E   LL
Sbjct: 425 LARDLGMLKERYRVVKVQPVDMFPHTFHIESVALL 459


>gi|46199290|ref|YP_004957.1| putative tRNA (uracil-5-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|51316687|sp|Q72IZ3|Y988_THET2 RecName: Full=Uncharacterized RNA methyltransferase TT_C0988
 gi|46196915|gb|AAS81330.1| putative tRNA (uracil-5-)-methyltransferase [Thermus thermophilus
           HB27]
          Length = 406

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 24/154 (15%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           LELY G+G FSL+L+  ++ V+AVEI+K +V     +       NV+ +RM +       
Sbjct: 270 LELYAGSGLFSLLLSPRYEEVVAVEISKEAVRRGEMDRKRLGAENVRFLRMDA------- 322

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD 331
              R+   L   D+       + VDPPR+GL  +    +++A P  ILY+SC+P +  RD
Sbjct: 323 ---RKAEALGAFDL-------VVVDPPRAGLPPEVRAYLLRARPREILYVSCDPATWARD 372

Query: 332 LSILSTTHTIERLAL---FDQFPYTRHMECGVLL 362
           +  L       RLA    +D FP+T H+E   LL
Sbjct: 373 VGAL--VQGGYRLAFARPYDFFPFTHHVEVLSLL 404


>gi|229108092|ref|ZP_04237717.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
 gi|228675367|gb|EEL30586.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
          Length = 459

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++  AR N   +   N K     ++++   
Sbjct: 317 IVDAYCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPK 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E             +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL R
Sbjct: 377 WVKE------------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D+  L  ++ +E +   D FP+T H+E  V L
Sbjct: 425 DVQALMKSYEVEYVQPVDMFPHTAHVENVVRL 456


>gi|314918299|gb|EFS82130.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL050PA1]
          Length = 393

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+        ++ +   F Q + G    + + V+ + + 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVVAGGFWQVHPGAAEALADAVIGSLEP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|303233829|ref|ZP_07320482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           BVS033A4]
 gi|302495024|gb|EFL54777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           BVS033A4]
          Length = 496

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G  ++ +  + +  + VE+ K +V+ A  N   N++ +++ +   S+     
Sbjct: 264 ILDLYCGIGTTTMYIG-NGNNTIGVEVVKDAVKDANENKKLNNLESIQFIEEKSENVVGK 322

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           + +E               F  I VDPPR G+D+  V  +       ++YISC+P +L R
Sbjct: 323 LTQEH--------------FDIILVDPPRKGMDEKVVDAIIKSTAKKLVYISCDPATLAR 368

Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVR 364
           DL  L+     +  + L D F  T H+E   LL +
Sbjct: 369 DLKALTENGFEVRDVKLVDMFAKTMHVETAALLSK 403


>gi|260592299|ref|ZP_05857757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis
           F0319]
 gi|260535749|gb|EEX18366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis
           F0319]
          Length = 474

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 16/192 (8%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVL 235
           L ++    SF Q N     H+   V      + GD L  +LY G G  +  +A+   +V+
Sbjct: 295 LKFKVSPKSFYQTNTEQAYHLYS-VAREFANLTGDELVYDLYTGTGTIANFIAKKARKVI 353

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E    ++E A+ N   N+++N        K+         EF     I  H  R   I
Sbjct: 354 GIEYVPEAIEDAKVNSNVNNIDNTLFYAGDMKDILT-----EEF-----IQKHG-RPDVI 402

Query: 296 FVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
             DPPR+G+    V ++  A P  I+Y+SCNP +  RDL++L   + +  +   D FP+T
Sbjct: 403 ITDPPRAGMHPDVVNVILGASPKRIVYVSCNPATQARDLALLDADYKVAAVQPVDMFPHT 462

Query: 354 RHMECGVLLVRK 365
            H+E  VLL ++
Sbjct: 463 PHVENVVLLEKR 474


>gi|317056887|ref|YP_004105354.1| TrmA family RNA methyltransferase [Ruminococcus albus 7]
 gi|315449156|gb|ADU22720.1| RNA methyltransferase, TrmA family [Ruminococcus albus 7]
          Length = 417

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 158/390 (40%), Gaps = 48/390 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-LYH 60
            G  L + Y +QL  K ++  +M+  F      +   EP +YR + +     D    +  
Sbjct: 23  GGCQLSESYSEQLTRKQEKAARMLSGFGRVEDIVPMEEPYNYRCKVQTVYATDSSKRIIS 82

Query: 61  IMFDQQTKERMRIDYFM-------PGSLLINALMIEMMATIRLEP--------LLRAKLF 105
            ++   +K  + +D  M       P    I  LM +M    R+ P        ++R  L 
Sbjct: 83  GVYQSNSKRMVAVDDCMLEAQQAAPIVCTIKKLMKDM----RIRPYDMRTGVGIVRHTLI 138

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR----ANKTKIC 161
           +  + T Q    IVT        + + +  ++    +    + I   G       ++ + 
Sbjct: 139 RTSFSTGQVMVVIVTASAMLPSKNNFVKALVKAHPEITTVVHNICPDGMPLTLGERSIVL 198

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA---TKGIQGDLLELYC 218
               Y+++ L        +R    SF Q N      +  + + A   TKG +  +++ YC
Sbjct: 199 YGDGYIEDELC----GCRFRISPASFYQVNPIQTEKLYSYAVEAAGITKGTK--VIDAYC 252

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   ++ A +   V  VE  K +   A+ N   N ++N+      + +F QAM     
Sbjct: 253 GTGTIGIICAVNGADVTGVESNKHACRDAKVNAGLNGLDNISFYNEDAGKFMQAM----- 307

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILS 336
            +R +  D+       + +DPPR+G     +G  +  A   I+Y+SC  ++L RDL IL+
Sbjct: 308 ASRGESCDV-------LIMDPPRAGASSEFIGCALKLAPKRIVYVSCKIETLERDLRILT 360

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365
              +    +   D FP+T  +E  V L RK
Sbjct: 361 KGGYKAVNIQPVDMFPHTMGIETVVCLERK 390


>gi|47092904|ref|ZP_00230686.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
           H7858]
 gi|255521018|ref|ZP_05388255.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL
           J1-175]
 gi|47018730|gb|EAL09481.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
           H7858]
          Length = 453

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   A
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|312128413|ref|YP_003993287.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778432|gb|ADQ07918.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 451

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 24/209 (11%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           DE + + G + I  +I N        SF Q N+     +   V+   + I+ +++ ++Y 
Sbjct: 252 DEDILIWGSSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYSQVVKYLRNIEAEVVFDIYS 311

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  S+ +A    +V A+EI + +VE A+ +   N ++N++ +   +         E E
Sbjct: 312 GIGTISMFIAPFCKKVYAIEIVEDAVEDAKKSSKNNSISNIEFICGCA---------EIE 362

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335
             +L    I     + + +DPPRSG +   +  +      +I+Y+SCNP +L RD +IL 
Sbjct: 363 IPKLLKSGIIP---QAVILDPPRSGCEKELLESLIEHKISNIIYVSCNPSTLARDANILY 419

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           S  + I  +   D FP T H+EC  L  +
Sbjct: 420 SGGYEILEVQPVDMFPQTFHVECVALFKK 448


>gi|284929759|ref|YP_003422281.1| 23S rRNA m(5)U-1939 methyltransferase [cyanobacterium UCYN-A]
 gi|284810203|gb|ADB95900.1| 23S rRNA m(5)U-1939 methyltransferase [cyanobacterium UCYN-A]
          Length = 448

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 17/122 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G F+L LA+     + +EI+  S+E A+ N   N++NNV+  + + K+    
Sbjct: 310 IVDAYCGIGTFTLPLAKRISHAIGIEISHDSIEQAKANAELNNINNVEFYQGAVKDILPT 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           +      N   DI         + +DPPR G DD+ +  ++    P I+YISC P +L R
Sbjct: 370 L------NIFPDI---------VLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLAR 414

Query: 331 DL 332
           DL
Sbjct: 415 DL 416


>gi|238753463|ref|ZP_04614826.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia ruckeri ATCC
           29473]
 gi|238708416|gb|EEQ00771.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia ruckeri ATCC
           29473]
          Length = 363

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +   +        +G+  G + +L+CG G F L  A    R+  +EI+  +
Sbjct: 192 QSFFQTNPQVAAALYATARDWVRGLNIGSMWDLFCGVGGFGLHCATTETRLTGIEISAEA 251

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +  AR +     +  V    + S  F      E E   L            + V+PPR G
Sbjct: 252 IACARQSAEKLGLKQVSFAALDSTHFATG---EAEVPEL------------VLVNPPRRG 296

Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +       +   A P ILY SC+ +++ +D++ L   + I+R+ LFD FP+T H E   L
Sbjct: 297 ISAELCCYLSQMAPPFILYSSCHAETMAQDIAALPD-YRIQRVQLFDMFPHTSHYEVLTL 355

Query: 362 LVRK 365
           LVR+
Sbjct: 356 LVRR 359


>gi|209559750|ref|YP_002286222.1| RNA methyltransferase, TrmA family [Streptococcus pyogenes NZ131]
 gi|209540951|gb|ACI61527.1| RNA methyltransferase, TrmA family [Streptococcus pyogenes NZ131]
          Length = 451

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           Q  + ++  +          L  A+ +      ++  ++  +I      ++T+I   ++ 
Sbjct: 209 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           + E +   G  L  R    +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 265 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  A   +N          + +A + E    +    
Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|167394809|ref|XP_001741107.1| RNA m5u methyltransferase [Entamoeba dispar SAW760]
 gi|165894444|gb|EDR22431.1| RNA m5u methyltransferase, putative [Entamoeba dispar SAW760]
          Length = 479

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 28/216 (12%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINV---HMLEWVLAATKGIQG 211
           NK +I    DY+ E L      L ++    SF Q N+ G  V    + E++      I  
Sbjct: 280 NKMEILYGNDYITEELL----GLHFKITPMSFFQTNSLGAEVLYQTVREYITTTKCDI-- 333

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LYCG G  + +L+    +++ VE+   ++ AA+ N   N + N         EF  
Sbjct: 334 -IFDLYCGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNC--------EFRT 384

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
           A     E ++L++      R + I +DPPR+G+    +  +  Y    I+Y+SC P +L 
Sbjct: 385 A-DVNNELDQLQE-----NRPELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLV 438

Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL IL    + ++ + L D FP T H+E   LL +
Sbjct: 439 RDLIILEQNGYKVKNITLVDMFPNTPHIETVCLLKK 474


>gi|156402171|ref|XP_001639464.1| predicted protein [Nematostella vectensis]
 gi|156226593|gb|EDO47401.1| predicted protein [Nematostella vectensis]
          Length = 711

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 28/196 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           N+F Q N+     M+  +++   G Q +  LL++ CG G+  L LA++  +V+ VE+ + 
Sbjct: 513 NAFFQVNSKAAEKMIH-IISRWMGEQKETTLLDICCGTGSIGLCLAKYVSKVIGVEVIQS 571

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKE-FT-QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +VE A+ N   N + N + V   +++ FT ++M+R R F +   I           +DPP
Sbjct: 572 AVEDAKQNAIMNGITNAEYVCGKAEDVFTYKSMKRLRRFTQCIGI-----------MDPP 620

Query: 301 RSGLDDATVGMVQAY---PHILYISCNPD-------SLCRDLS--ILSTTHTIERLALFD 348
           R+G+  + +  ++ Y     ++Y+SC PD        LCR  S  + S    +      D
Sbjct: 621 RAGVHKSVIDAIRKYDKLDKLIYVSCAPDHAIPNLLDLCRPTSKRVKSVPFRLVSAVPVD 680

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T+H E  +L  R
Sbjct: 681 LFPHTKHCELLMLFQR 696


>gi|160876396|ref|YP_001555712.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS195]
 gi|226725388|sp|A9KYI1|RUMA_SHEB9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|160861918|gb|ABX50452.1| RNA methyltransferase, TrmA family [Shewanella baltica OS195]
 gi|315268586|gb|ADT95439.1| RNA methyltransferase, TrmA family [Shewanella baltica OS678]
          Length = 450

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 26/186 (13%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q N  IN  M    ++W+  A       +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 279 GNFVQVNGQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298
              V  AR N  AN+++ +                    +   D+ +  +  +   + +D
Sbjct: 336 AEMVTQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356
           P R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + +++L L D FP T H+
Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHI 440

Query: 357 ECGVLL 362
           E   L 
Sbjct: 441 EAMALF 446


>gi|46907981|ref|YP_014370.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226224354|ref|YP_002758461.1| hypothetical RNA methyltransferase [Listeria monocytogenes
           Clip81459]
 gi|254992256|ref|ZP_05274446.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL
           J2-064]
 gi|51316673|sp|Q71YR7|Y1776_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1776
 gi|46881251|gb|AAT04547.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|225876816|emb|CAS05525.1| Putative hypothetical RNA methyltransferase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 453

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   A
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|332994403|gb|AEF04458.1| RNA methyltransferase, TrmA family protein [Alteromonas sp. SN2]
          Length = 473

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 15/184 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N F Q NA +N  M+   L+      G+ + + + G GNF+L +A     V AVE     
Sbjct: 300 NDFVQVNAEVNTKMVAQALSWLAPKAGERIADWFSGLGNFTLPIANSGATVSAVEGVAEM 359

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+ N     + NV  +++        +  E+  ++       +  F  + +DP R G
Sbjct: 360 VQRAKSNALEQGITNVDWMQLD-------LADEKSVDK-----ALAGGFDKVLLDPSREG 407

Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
                  +V+A P+ I+Y+SCNP++  RD  +L    + +++  + + FP+T HME   L
Sbjct: 408 ALTVCHALVRATPNTIVYVSCNPNTFSRDARVLIDGGYQMQKAGVVEMFPFTHHMETMAL 467

Query: 362 LVRK 365
             R+
Sbjct: 468 FTRQ 471


>gi|332362548|gb|EGJ40348.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1056]
          Length = 465

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+   +V  VE+   +V+ +R N A N + N   V   ++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVKNSRKNAAINGITNASYVCAPAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVNLLVKR 464


>gi|254932803|ref|ZP_05266162.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293584356|gb|EFF96388.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|332312191|gb|EGJ25286.1| hypothetical protein LMOSA_26720 [Listeria monocytogenes str. Scott
           A]
          Length = 453

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   A
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|293610392|ref|ZP_06692693.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827624|gb|EFF85988.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 463

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDRVLAVEIAKP 242
           FTQ NA +N  M++      +   G+ +L+L+CG GNFSL LAR      +V+ VE ++ 
Sbjct: 286 FTQVNATVNEQMVQLACELLQLQPGEKVLDLFCGLGNFSLPLARCVGESGQVVGVEGSEE 345

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            V+ A  N   N +       + +  F+Q +         KD   HS+    F  + +DP
Sbjct: 346 MVQRATANAECNSL-------VQATFFSQDL--------TKDFSHHSWANQGFDALLIDP 390

Query: 300 PRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           PR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ D F +T H+E
Sbjct: 391 PRAGAYEIMQYVSNFGAKRIVYVSCNPATLARDAGVLVQYGYQLKKAAVMDMFTHTEHVE 450


>gi|217972409|ref|YP_002357160.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS223]
 gi|254766921|sp|B8E8S1|RUMA_SHEB2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|217497544|gb|ACK45737.1| RNA methyltransferase, TrmA family [Shewanella baltica OS223]
          Length = 450

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 26/186 (13%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q N  IN  M    ++W+  A       +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 279 GNFVQVNGQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298
              V  AR N  AN+++ +                    +   D+ +  +  +   + +D
Sbjct: 336 AEMVTQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356
           P R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + +++L L D FP T H+
Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHI 440

Query: 357 ECGVLL 362
           E   L 
Sbjct: 441 EAMALF 446


>gi|89890519|ref|ZP_01202029.1| RNA methyltransferase [Flavobacteria bacterium BBFL7]
 gi|89517434|gb|EAS20091.1| RNA methyltransferase [Flavobacteria bacterium BBFL7]
          Length = 485

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 139/313 (44%), Gaps = 62/313 (19%)

Query: 69  ERMRIDYFMP--GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           E  +I+YF P   + ++  LM+ M +T   E ++  + F+ D      ++A ++L+ H  
Sbjct: 212 EAEQIEYFNPREKTGVLRTLMLRMSST--GEIMVVIQFFKED------EKARISLLEH-- 261

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKT-----KICLD-RDYVDERLTVAGRTLIY 180
           L +++ +           +  Q  +  +AN T      IC D RD++ E +      L +
Sbjct: 262 LKNSFPQI----------KSLQYIINEKANDTIYDQEVICYDGRDHIFEEM----EGLQF 307

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVE 238
           +    SF Q N+     + + +     G+ G+ L  +LY G G  +  +A+  + V+ +E
Sbjct: 308 KINAKSFYQTNSKQAFELYK-ITRDFAGLTGEELVYDLYTGTGTIAQFVAKKANHVVGIE 366

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF------ 292
               ++E A+ N A N ++N          F   MR           D+ +  F      
Sbjct: 367 SVPVAIEDAKANAAHNGIDNTTF-------FAGDMR-----------DVFTADFIAEHGA 408

Query: 293 -KTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349
              +  DPPR G+    V   +  A P I+Y+SCN  +  RDL++L+  + + +    D 
Sbjct: 409 PDVVITDPPRDGMHKDVVAQLLALAAPRIVYVSCNSATQARDLALLNEQYKVVKYQPVDM 468

Query: 350 FPYTRHMECGVLL 362
           FP T H+E  VLL
Sbjct: 469 FPQTHHVESVVLL 481


>gi|313113178|ref|ZP_07798804.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624517|gb|EFQ07846.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 456

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 12/145 (8%)

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A H   ++ VEI   ++E+A+ N A    +     R    +  QA  R 
Sbjct: 314 YCGMGTIGLSMAAHCRELIGVEIVPEAIESAKANAARMGADVAAKSRFFCADAGQAATRL 373

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSI 334
                  DI         + +DPPR G D+AT+  +V+  P  ++Y+SCNP +  RD + 
Sbjct: 374 AAEGLHPDI---------VMLDPPRKGCDEATLSAVVRMSPRRVVYVSCNPATAARDAAW 424

Query: 335 LS-TTHTIERLALFDQFPYTRHMEC 358
           L    +  E++   D FP TRH EC
Sbjct: 425 LEQNGYHAEKVQPVDLFPRTRHCEC 449


>gi|284802195|ref|YP_003414060.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578]
 gi|284995337|ref|YP_003417105.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923]
 gi|284057757|gb|ADB68698.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578]
 gi|284060804|gb|ADB71743.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923]
          Length = 453

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   A
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|254826004|ref|ZP_05231005.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|293595243|gb|EFG03004.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
          Length = 453

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   A
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|16800929|ref|NP_471197.1| hypothetical protein lin1863 [Listeria innocua Clip11262]
 gi|50401774|sp|Q92AQ7|Y1863_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1863
 gi|16414364|emb|CAC97093.1| lin1863 [Listeria innocua Clip11262]
 gi|313618389|gb|EFR90415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
           S4-378]
          Length = 453

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N++ N       ++E    
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLTNTTFETGKAEEVIPQ 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +            +      + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYK------------NGIVADVLVVDPPRKGCDETLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ IL+   +  +++   D FP T H+E   +L  K
Sbjct: 418 DMKILTEGGYEAKKVQPVDMFPMTTHIEAVTVLTLK 453


>gi|21910835|ref|NP_665103.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28895474|ref|NP_801824.1| RNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|50401596|sp|Q8K6K7|Y1299_STRP3 RecName: Full=Uncharacterized RNA methyltransferase
           SpyM3_1299/SPs0562
 gi|21905040|gb|AAM79906.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28810720|dbj|BAC63657.1| putative RNA methyltransferase [Streptococcus pyogenes SSI-1]
          Length = 451

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           Q  + ++  +          L  A+ +      ++  ++  +I      ++T+I   ++ 
Sbjct: 209 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           + E +   G  L  R    +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 265 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  A   +N          + +A + E    +    
Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|332664986|ref|YP_004447774.1| RNA methyltransferase, TrmA family [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333800|gb|AEE50901.1| RNA methyltransferase, TrmA family [Haliscomenobacter hydrossis DSM
           1100]
          Length = 470

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 20/203 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNG 221
           + Y +E+L      + +R    SF Q N   G N++ +    A  +G + ++ +LY G G
Sbjct: 279 KGYAEEQLG----HVRFRIGPKSFFQTNTRQGENLYDVVTRFANLQGHE-NVYDLYTGIG 333

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +  L +A+   +V+ +E    +++ A+ N   N V NVK      +              
Sbjct: 334 SIGLYVAKDCKQVVGIEEVAAAIDDAKINAEVNGVENVKFYVGDVRAILTT--------- 384

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
             +      +   +  DPPR+G+ +  + M+     P I+Y+SCNP +  RDL  LST +
Sbjct: 385 --EFAAQHGKPDLLITDPPRAGMHEDVINMLLELEAPRIVYVSCNPGTQARDLGRLSTKY 442

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
            + ++   D FP+T H+E   LL
Sbjct: 443 QVLKVQPVDMFPHTHHIESVALL 465


>gi|304410178|ref|ZP_07391797.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183]
 gi|307302111|ref|ZP_07581869.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175]
 gi|304351587|gb|EFM15986.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183]
 gi|306914149|gb|EFN44570.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175]
          Length = 450

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 88/186 (47%), Gaps = 26/186 (13%)

Query: 185 NSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F Q N  IN  M    ++W+  A       +L+L+CG GNFSL LA+    V+ VE  
Sbjct: 279 GNFVQVNGQINKAMVAQAMDWLAPAP---DERILDLFCGMGNFSLPLAKMGADVIGVEGV 335

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVD 298
              V  AR N  AN+++ +                    +   D+ +  +  +   + +D
Sbjct: 336 AEMVTQARVNAKANNLDKLTFYHG---------------DLSADLSLEPWMGKIDKLLLD 380

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHM 356
           P R+G  ++   + +  P  ++Y+SCNP SL RD ++ L   + +++L L D FP T H+
Sbjct: 381 PARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHI 440

Query: 357 ECGVLL 362
           E   L 
Sbjct: 441 EAMALF 446


>gi|261879348|ref|ZP_06005775.1| TrmA family RNA methyltransferase [Prevotella bergensis DSM 17361]
 gi|270333911|gb|EFA44697.1| TrmA family RNA methyltransferase [Prevotella bergensis DSM 17361]
          Length = 489

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 36/219 (16%)

Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWV----LAATKGIQGD------ 212
           +T  G   IY  +E+        SF Q N     H+   V       +    GD      
Sbjct: 281 ITYQGTDCIYETMEDLKFKVGPKSFYQTNTDQAYHLYSVVRNMCFKGSDSGDGDESGTER 340

Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              + +LY G G  +  +A+   +V+ +E    ++E A+ N   N + N +        F
Sbjct: 341 RPLIYDLYTGTGTIANFVAKKASQVIGIEFVPEAIEDAQVNSRINGIENTQF-------F 393

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMV-QAYPH-ILYISCNPD 326
              M+     N L D  I  +    I + DPPR+G+ +  V ++  A P  I+Y+SCNP 
Sbjct: 394 AGDMK-----NVLTDDFISEHGCPDIIITDPPRAGMHEDVVRVILNAAPACIVYVSCNPA 448

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL++L   + +E +   D FP+T H+E  V L R+
Sbjct: 449 TQARDLALLDQDYRVEEVQPVDMFPHTPHVENVVKLTRR 487


>gi|254853661|ref|ZP_05243009.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300765947|ref|ZP_07075919.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
 gi|258607040|gb|EEW19648.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300513333|gb|EFK40408.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
          Length = 453

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   A
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|225386438|ref|ZP_03756202.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme
           DSM 15981]
 gi|225047456|gb|EEG57702.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme
           DSM 15981]
          Length = 506

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 94/195 (48%), Gaps = 26/195 (13%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N    V +    L    G+ G+  + +LYCG G  SL LA+   +V  VEI   +
Sbjct: 326 SFYQVNPAQTVKLYGTALEYA-GLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQA 384

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E AR N   N + NV+     ++E        REF   ++  I++     I VDPPR G
Sbjct: 385 IEDARRNAKINGIENVEFFVGKAEEVLP-----REF---EEKQIYA---DVIVVDPPRKG 433

Query: 304 LDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME--- 357
            D+  +  +V+  P  ++Y+SC+  +L RD+  L      +ER+   D F  + H+E   
Sbjct: 434 CDEVCLDTIVKMGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVI 493

Query: 358 ----CGVLLVRKPSG 368
               CG  +VRK  G
Sbjct: 494 MMQNCG--MVRKSRG 506


>gi|317047525|ref|YP_004115173.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. At-9b]
 gi|316949142|gb|ADU68617.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. At-9b]
          Length = 374

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV  A  G+   + +L+CG G F L  A    ++  +EI 
Sbjct: 207 QSFFQTNPQVAASLYATARDWV--AQLGV-SSMWDLFCGVGGFGLHCASAEMQLTGIEIN 263

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR +     + NV    + S +F  A  +  E                + V+PP
Sbjct: 264 AEAIACARQSAQQLGLENVSFAALDSTQFATARDQVPEL---------------VLVNPP 308

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+       +   A  +ILY SCNP S+ +D++ LS  + + R+ LFD FP+T H E 
Sbjct: 309 RRGIGTELCAYLSQMAPAYILYSSCNPHSMAQDIARLS-AYDVSRVQLFDMFPHTAHFEV 367

Query: 359 GVLLVRK 365
             LL ++
Sbjct: 368 LTLLTKR 374


>gi|208779007|ref|ZP_03246353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida
           FTG]
 gi|208744807|gb|EDZ91105.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida
           FTG]
          Length = 449

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIQRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441


>gi|71904022|ref|YP_280825.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|71803117|gb|AAX72470.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS6180]
          Length = 451

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSYRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           Q  + ++  +          L  A+ +      ++  ++  +I      ++T+I   ++ 
Sbjct: 209 QVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEI----YGDETEILWGQEA 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           + E +   G  L  R    +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 265 IHEEVLDYGFALSPR----AFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  A   +N          + +A + E    +    
Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|312863381|ref|ZP_07723619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           vestibularis F0396]
 gi|311100917|gb|EFQ59122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           vestibularis F0396]
          Length = 453

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +VE A+ N   N + N   V  S++    A
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M +  +     DI         I VDPPR GL ++ +   V   P  I Y+SCNP ++ R
Sbjct: 365 MAKWSKDGIKPDI---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ S     + ++++   D FP T H+EC VLL R
Sbjct: 416 DIKSYQELGYELKKVQPVDLFPQTHHVECVVLLQR 450


>gi|270261139|ref|ZP_06189412.1| 23S rRNA uracil-5-methyltransferase [Serratia odorifera 4Rx13]
 gi|270044623|gb|EFA17714.1| 23S rRNA uracil-5-methyltransferase [Serratia odorifera 4Rx13]
          Length = 375

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 25/186 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A   GI   + +L+CG G F L  A+   R+  +EI+
Sbjct: 208 QSFFQTNPQVAAKLYATARDWVRAL--GID-SMWDLFCGVGGFGLHCAQPETRLTGIEIS 264

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR +     + +V    + S  F  A   E    +L            + V+PP
Sbjct: 265 AEAIACARQSAETLGLQHVSFQALDSTRFATA---EGSVPQL------------VLVNPP 309

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+  A    +   A  +ILY SCN +S+ +D+  L   + IER+ LFD FP+T H E 
Sbjct: 310 RRGIGQALCDYLNQMAPGYILYSSCNAESMAKDIEGLPD-YRIERVQLFDMFPHTAHYEV 368

Query: 359 GVLLVR 364
             LLVR
Sbjct: 369 LTLLVR 374


>gi|254428372|ref|ZP_05042079.1| 23S rRNA (uracil-5-)-methyltransferase [Alcanivorax sp. DG881]
 gi|196194541|gb|EDX89500.1| 23S rRNA (uracil-5-)-methyltransferase [Alcanivorax sp. DG881]
          Length = 445

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 27/180 (15%)

Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ NA IN  M+   L       +  +L+L+CG GNF++  A+   +V+ VE+++  VE
Sbjct: 273 FTQVNAEINRKMVPLALDLLDISPEHTVLDLFCGLGNFTIPAAKRAGKVVGVEVSQAMVE 332

Query: 246 AARYNIAANHVNNVKI--VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
               N   N + N++     +S     QA  R+               +  I +DPPR+G
Sbjct: 333 RGYENARRNGLENLEFHAWDLSQDVSGQAWARQ--------------AYDRILIDPPRTG 378

Query: 304 LDDATVGMVQAYP-----HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
                + MV+  P      I+Y+SCNP +L RD   +++  + ++   + D FP+T H+E
Sbjct: 379 ----ALEMVKLMPRLGASRIVYVSCNPATLARDAGELMALGYRLKAAGVMDMFPHTTHVE 434


>gi|313623370|gb|EFR93595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
           J1-023]
          Length = 453

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N++ N       ++E    
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLTNTTFETGKAEEVIPQ 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +            +      + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYK------------NGIVADVLVVDPPRKGCDETLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ IL+   +  +++   D FP T H+E   +L  K
Sbjct: 418 DMKILTEGGYEAKKVQPVDMFPMTTHIEAVTVLTLK 453


>gi|312867279|ref|ZP_07727489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parasanguinis F0405]
 gi|311097408|gb|EFQ55642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parasanguinis F0405]
          Length = 450

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   ++E A+YN       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
             +E             YR   + VDPPR+GL    +  ++Q  P  ++Y+SCN  +L R
Sbjct: 368 WYQE------------GYRANAVIVDPPRTGLGTKLIETLLQYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + +E +   D FP+T   E  V LV+K
Sbjct: 416 DLVALTKVYQVEYIQSVDMFPHTARTEAVVKLVKK 450


>gi|19746533|ref|NP_607669.1| RNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|50401605|sp|Q8P017|Y1615_STRP8 RecName: Full=Uncharacterized RNA methyltransferase spyM18_1615
 gi|19748743|gb|AAL98168.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS8232]
          Length = 451

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 155/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174
           Q  + ++  + +  A      R    L     Q++ +   +N +K      Y DE   + 
Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNCSK--SSEIYGDETEILW 260

Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           G+  I+ ++          +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 261 GQEAIHEEVLDYGFALSPRTFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  A   +N          + +A + E    +    
Sbjct: 321 AFAGKVKSVRGMDIISEAIEDAQKNAKAMGFDNA---------YYEAGKAEDIIPKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|225874142|ref|YP_002755601.1| 23S rRNA (uracil-5-)-methyltransferase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225793976|gb|ACO34066.1| 23S rRNA (uracil-5-)-methyltransferase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 427

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 132/341 (38%), Gaps = 38/341 (11%)

Query: 30  VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE 89
           +P +Q+   EP  YR R   H+      L +       +E+  +   +    +    ++ 
Sbjct: 104 LPEIQVIAGEPWGYRNRIRLHVETKPFALGY------RREQSHVTLPVEECRIAAPALVR 157

Query: 90  MMATI--RLEPLLRAKLFQIDYLTSQSDQAIVTLIY--------HRLLDDAWRECAIRLR 139
            M  +  + E  L     +++  T  + + ++  +Y           LD  W      L 
Sbjct: 158 AMQVLVEQCEAALAGWAREVELFTDDATELLLISVYADAATAKMQERLDALWERLQGALP 217

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
           +A     + +   G+    ++          LT     L YR    +F Q N  +   M+
Sbjct: 218 EAAGCAAFALP-AGKGFARRVATAGG---PSLTYGAGGLQYRVSAGAFFQVNRFLVDRMV 273

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             V  A  G      +LY G G F+  L   F+ V AVE A  SV   R N     V   
Sbjct: 274 AAVCEARAGATA--WDLYAGVGLFAKALVPRFEHVTAVEAAPESVADLRVNAPGARVVAA 331

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-H 317
             +    K   +A +R+   +              +  DPPR+GL  D T  + +  P H
Sbjct: 332 TTLDFLRKAAQEAGKRKAAPD-------------LVVADPPRAGLGKDVTALLGKIRPRH 378

Query: 318 ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
           I Y+SC+P +L RDL ++L + +    L L D FP T H+E
Sbjct: 379 ITYVSCDPATLSRDLFALLQSGYRFRSLHLLDMFPQTFHVE 419


>gi|306826963|ref|ZP_07460262.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304430825|gb|EFM33835.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 451

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 156/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174
           Q  + ++  + +  A      R    L     Q++ +   +N++K      Y DE   + 
Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNRSK--SSEIYGDETEILW 260

Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           G+  I+ ++          +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 261 GQEAIHEEVLDYGFALSPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  +   +N          + +A + E    +    
Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNA---------YYEAGKAEDIIPKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|148242321|ref|YP_001227478.1| putative RNA methyltransferase [Synechococcus sp. RCC307]
 gi|147850631|emb|CAK28125.1| Hypothetical RNA methyltransferase [Synechococcus sp. RCC307]
          Length = 455

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 19/155 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G   L L +   R++ +E ++ S+E A+ N   N + +      S +     
Sbjct: 310 LVDAYCGVGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVE----- 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
            RR +EF    D+         + +DPPR GLD      ++  P   + Y+SCNP +L R
Sbjct: 365 -RRLQEFLPFTDV---------LLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLAR 414

Query: 331 DLSILSTTHTIE--RLALFDQFPYTRHMECGVLLV 363
           DL++L      E  ++  FD FP T H+E   +L 
Sbjct: 415 DLALLCADQRFELTKVVPFDFFPQTTHIEAMAILT 449


>gi|228476330|ref|ZP_04061031.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
 gi|228269613|gb|EEK11119.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
          Length = 454

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VEI   +++ A+ N   NH +N       ++E    
Sbjct: 310 VLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVIIE 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            +++                  I VDPPR G D   +  +++  P  I+YISCNP +  R
Sbjct: 370 WKQK------------GIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQR 417

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D  +L+  + ++ +   D FP+T H+E   L  RK
Sbjct: 418 DAQLLANLYYLKEITPVDMFPHTTHIETVALFERK 452


>gi|160915760|ref|ZP_02077968.1| hypothetical protein EUBDOL_01775 [Eubacterium dolichum DSM 3991]
 gi|158432236|gb|EDP10525.1| hypothetical protein EUBDOL_01775 [Eubacterium dolichum DSM 3991]
          Length = 451

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 16/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   + +A    +V+ VE+ K +V+ A  N   N + N++ +   +  F   
Sbjct: 307 VLDAYCGIGTIGMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAGSFMSQ 366

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           + + ++      +D+       + +DPPRSG     +        P ILYISCNP++  R
Sbjct: 367 LAKAQQ-----TLDV-------LIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIR 414

Query: 331 DLSILST-THTIE-RLALFDQFPYTRHMECGVLLVRK 365
           D+ +L    + +E  + L D FP+T  +E   +LVRK
Sbjct: 415 DIRMLQKLGYRVEGSMTLVDMFPFTNSIESVCMLVRK 451


>gi|304382443|ref|ZP_07364941.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM
           16973]
 gi|304336396|gb|EFM02634.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM
           16973]
          Length = 473

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 24/200 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
           G+  IY  +E+        SF Q N     H+   V    +    +L+ +LY G G  + 
Sbjct: 282 GKDHIYETMEDLRFKVGPKSFYQTNTAQAYHLYSVVRDLARLTGSELVYDLYTGTGTIAN 341

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKD 284
            +AR+  RV+ +E    ++E A+ N   N ++N        K   T+    E        
Sbjct: 342 FVARNAGRVIGIEYVPEAIEDAKVNSQINGIDNTLFYAGDMKNILTETFIAE-------- 393

Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
              HS R   +  DPPR+G+  D    ++   P  I+Y+SCNP +  RDL+++   + + 
Sbjct: 394 ---HS-RPDVVITDPPRAGMHPDVVQTILNTLPQRIVYVSCNPATQARDLALMDVRYKVT 449

Query: 343 RLALFDQFPYTRHMECGVLL 362
            +   D FP+T H+E  VLL
Sbjct: 450 VVQPVDMFPHTPHVENVVLL 469


>gi|255009493|ref|ZP_05281619.1| putative RNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 472

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 186 SFTQPNAG--INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           SF Q N+G   N++ +    A   G  G+L+ +LY G G  +  ++R   +V+ +E    
Sbjct: 301 SFYQTNSGQAYNLYKVARDFAGLTG--GELVYDLYTGTGTIANFVSRQARQVIGIEYVPE 358

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSY-RFKTIFVDPP 300
           ++E A+ N   N + N        K+  TQ               I+ Y R   I  DPP
Sbjct: 359 AIEDAKVNAEINGIENTLFFAGDMKDILTQDF-------------INQYGRPDVIITDPP 405

Query: 301 RSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R+G+    V ++  A P  I+Y+SCNP +  RDL +L   + ++ +   D FP+T H+E 
Sbjct: 406 RAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKYRVKAVQPVDMFPHTHHVEN 465

Query: 359 GVLL 362
            VLL
Sbjct: 466 VVLL 469


>gi|39996552|ref|NP_952503.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|51316711|sp|Q74D67|Y1452_GEOSL RecName: Full=Uncharacterized RNA methyltransferase GSU1452
 gi|39983433|gb|AAR34826.1| RNA methyltransferase, TrmA family [Geobacter sulfurreducens PCA]
 gi|307634847|gb|ADI84291.2| RNA methyltransferase, TrmA family [Geobacter sulfurreducens KN400]
          Length = 495

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 15/157 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++LYCG G  +L LA     V  +E+ + +V  A  N   N ++N       + E  +
Sbjct: 323 SVVDLYCGIGGIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIE 382

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
            +  E E            R   + ++PPR G D   +  V A     I+Y+SC P +L 
Sbjct: 383 ELVEEGE------------RLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLA 430

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL IL+   +   R+   D FP T H+E   LLV+K
Sbjct: 431 RDLDILAGLGYATLRVQPVDMFPQTPHVENIALLVKK 467


>gi|115379583|ref|ZP_01466671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821580|ref|YP_003953938.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363410|gb|EAU62557.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394652|gb|ADO72111.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
          Length = 428

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ++F Q +A  NV ++   + A      D +LELY GNGNF+  LA     VL VE +   
Sbjct: 258 DAFAQAHAEANVGLVTSAVYALAPRDTDSVLELYSGNGNFTFPLAATAASVLGVESSPVG 317

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A+ +     V NV+ ++  +++  Q +  E               F     DPPR+G
Sbjct: 318 VELAQRSAREGGVTNVRFIQGDARKVVQGLIGE------------GRTFDLCLADPPRTG 365

Query: 304 LDDATVGM-VQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358
                + + +     ++Y++C+P SL RD + +++  +    L + D FP T H+E 
Sbjct: 366 APGLALQVSLLGVKRVVYVACDPASLARDAAGLVAAGYRPVALQVVDMFPQTHHVEA 422


>gi|314936049|ref|ZP_07843398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655866|gb|EFS19609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
           subsp. hominis C80]
          Length = 454

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VEI   +++ A+ N   NH +N       ++E    
Sbjct: 310 VLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVIIE 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            +++                  I VDPPR G D   +  +++  P  I+YISCNP +  R
Sbjct: 370 WKQK------------GIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQR 417

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D  +L+  + ++ +   D FP+T H+E   L  RK
Sbjct: 418 DAQLLANLYYLKEITPVDMFPHTTHIETVALFERK 452


>gi|290968456|ref|ZP_06559995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781452|gb|EFD94041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 460

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  +L LA+   +V  +EI   +++ A  N   NH+ N + +   +      
Sbjct: 316 VADVYCGTGTITLFLAQKAKQVYGIEIVPSAIKDAIRNARDNHIKNAEFILGDA------ 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                   +L ++  +  R + I +DPPR+G  +  +  + ++ P  ++Y+SCNP +L R
Sbjct: 370 ------VYKLPELIKNGVRPQVIVLDPPRAGCGEPVLRAIGRSQPERVVYVSCNPATLAR 423

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL+ L T  +  ER+   D F  T H+E   L+ R
Sbjct: 424 DLACLQTYGYKTERVQPVDMFSRTHHVESVALVSR 458


>gi|169346803|ref|ZP_02865754.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens C str. JGS1495]
 gi|169297085|gb|EDS79207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens C str. JGS1495]
          Length = 451

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + 
Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           ++ + +                I +DPPRSG+    +  V  +  P I+Y+SCNP +L  
Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L +  + IE+  L D FP T H+E  V L RK
Sbjct: 416 DLKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNRK 451


>gi|293365360|ref|ZP_06612077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
 gi|291316810|gb|EFE57246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
          Length = 451

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 17/161 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  ++
Sbjct: 302 LKGDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTA 361

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCN 324
           +    AM+     N LK+      +   I VDPPR GL ++ +  G       I YISCN
Sbjct: 362 E---NAMK-----NWLKE----GIQPTAILVDPPRKGLTESFIKAGSQTGADRIAYISCN 409

Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
             ++ RD+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 410 VATMARDIKLYQELGYELKKIQPVDLFPQTHHVECVALLVK 450


>gi|307703903|ref|ZP_07640844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
 gi|307622738|gb|EFO01734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
          Length = 379

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 17/161 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  ++
Sbjct: 230 LKGDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTA 289

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCN 324
           +    AM+     N LK+      +   I VDPPR GL ++ +  G       I YISCN
Sbjct: 290 E---NAMK-----NWLKE----GIQPTAILVDPPRKGLTESFIKAGSQTGADRIAYISCN 337

Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
             ++ RD+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 338 VATMARDIKLYQELGYELKKIQPVDLFPQTHHVECVALLVK 378


>gi|146306765|ref|YP_001187230.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas mendocina
           ymp]
 gi|145574966|gb|ABP84498.1| 23S rRNA m(5)U-1939 methyltransferase [Pseudomonas mendocina ymp]
          Length = 450

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 23/191 (12%)

Query: 178 LIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
           L YR     F Q N  +N  M    L+W L+   G +  +L+L+CG GNF+L LAR    
Sbjct: 274 LAYR--PGDFVQVNGPVNEAMVAQALDW-LSVQPGER--VLDLFCGLGNFALPLARQAAE 328

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+AVE  +  V  A  N  +N ++N    R                N L +       F 
Sbjct: 329 VVAVEGVEAMVARAAANARSNGLDNAHFFRADLS------------NPLANETWARGGFA 376

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351
            + +DPPR G  +A  GM       ++Y+SCNP +L RD + L+   + + R  + D F 
Sbjct: 377 AVLLDPPRDGALEAVRGMSALGARRLVYVSCNPTTLARDAAELAQQGYRLRRAGILDMFA 436

Query: 352 YTRHMECGVLL 362
            T H+E   L 
Sbjct: 437 QTAHVEAMALF 447


>gi|24212992|ref|NP_710473.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45656154|ref|YP_000240.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|50401584|sp|Q8F9A3|Y292_LEPIN RecName: Full=Uncharacterized RNA methyltransferase LA_0292
 gi|51316691|sp|Q72VP7|Y249_LEPIC RecName: Full=Uncharacterized RNA methyltransferase LIC_10249
 gi|24193673|gb|AAN47491.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45599387|gb|AAS68877.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 393

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 16/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL +A    +V+ +E    S+ +A     AN + NV  ++    +  +A
Sbjct: 254 VVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKGKVLDTLRA 313

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                  N   D+         + +DPPR GLD  T  ++       ILY+SCNP++L R
Sbjct: 314 A-----LNENSDV---------VVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLR 359

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME 357
           D   L+ +   E++   D FP+T H+E
Sbjct: 360 DAIELTKSFKYEKITPVDLFPHTSHLE 386


>gi|56707825|ref|YP_169721.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670296|ref|YP_666853.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|81597688|sp|Q5NGX1|RUMA_FRATT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122970996|sp|Q14IC3|RUMA_FRAT1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|56604317|emb|CAG45338.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320629|emb|CAL08721.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|282159001|gb|ADA78392.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 449

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441


>gi|33152777|ref|NP_874130.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|50401521|sp|Q7VKU9|RUMA_HAEDU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|33149001|gb|AAP96519.1| 23S rRNA (Uracil-5-)-methyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 442

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 23/185 (12%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW LA T   +  +L+L+CG GNFSL +A+    V+ VE  + 
Sbjct: 274 FIQVNQPLNQKMVNKALEW-LAITA--EDRILDLFCGIGNFSLPIAQQAGFVVGVEGVEE 330

Query: 243 SVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            V+ A+ N   + +NN+   + + ++ F       + FN+             + +DP R
Sbjct: 331 MVKQAKINQQTSGLNNIAFYQTNLAESFVDQHWATQPFNK-------------VLLDPAR 377

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
            G       ++   P  I+YISCNP +L RD   ++   + I + A+ D FP+T H+E  
Sbjct: 378 QGALFCLDHLMALTPERIIYISCNPATLMRDAEKLIRHGYKIAKSAVIDMFPHTGHLESI 437

Query: 360 VLLVR 364
            + ++
Sbjct: 438 SMFIK 442


>gi|328675743|gb|AEB28418.1| RNA methyltransferase, trmA family [Francisella cf. novicida 3523]
          Length = 449

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINRKMIKRAIKLLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  S  + +    + D FP+T H+E
Sbjct: 385 AQEVCSNIEKFNVKRIVYVSCDTATLARDAGILVKSKGYKLISAGVMDMFPHTMHVE 441


>gi|325696032|gb|EGD37923.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK160]
          Length = 465

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+   +V  VE+   +VE +R N   N + N   V   ++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYVCAPAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   +   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMSR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 464


>gi|291320650|ref|YP_003515915.1| hypothetical protein MAGa7590 [Mycoplasma agalactiae]
 gi|290752986|emb|CBH40962.1| Hypothetical RNA methyltransferase [Mycoplasma agalactiae]
          Length = 446

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 18/158 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G  SL LA+   +V  +EI K +V  A+ N   N ++N         EF   
Sbjct: 296 VLDAYCGIGTISLFLAQKAKKVYGLEIVKEAVINAKENALDNSIHNT--------EFISG 347

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                  + +K ID  + +  T+ VDPPRSGL    +  ++   P  I YISCNP ++CR
Sbjct: 348 -------DVIKTIDSINEKIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCR 400

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           D+  ++   + +  L   D F  T H+E   +L  K +
Sbjct: 401 DIDQLIKAGYELSFLRPCDMFSQTYHIEMVAVLKLKDT 438


>gi|127512133|ref|YP_001093330.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella loihica
           PV-4]
 gi|126637428|gb|ABO23071.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella loihica
           PV-4]
          Length = 444

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 20/183 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            +F Q N  IN  M+   +   +   G+ +L+L+CG GNF+L LA+   +V+ VE     
Sbjct: 273 GNFIQVNGEINQQMVTQAIDWLQIQPGERVLDLFCGVGNFTLPLAKAGAQVVGVEGVDAM 332

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVDPPR 301
           V  AR N   + V           EF          +   D+    +  R   + +DP R
Sbjct: 333 VAQARVNATMSGVEGA--------EFYHG-------DLSADLSAAPWLGRIDKLLLDPAR 377

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECG 359
           +G  ++   + +  P  I+YISCNP SL RD   +L+  + + RL L D FP T H+E  
Sbjct: 378 AGAYESLQWLKKMKPKAIVYISCNPVSLARDCEPLLAQGYQLSRLGLIDMFPQTHHIEAM 437

Query: 360 VLL 362
            L 
Sbjct: 438 ALF 440


>gi|295426431|ref|ZP_06819081.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
           DSM 11664]
 gi|295063799|gb|EFG54757.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
           DSM 11664]
          Length = 461

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +VE A++N+  NH+ N    + S ++    
Sbjct: 318 LIDAYSGVGTLGILAADQVKQVVGIETIPEAVEDAKHNVQINHIKNADYFQGSVEKV--- 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                    L ++         + VDPPR+GL  + +  +++  P   +YISCNP +L +
Sbjct: 375 ---------LPELQKGGLPIDALIVDPPRTGLAKSLIKTLLRVKPQTFVYISCNPSTLAQ 425

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +L+ ++ +  +   D  P T   EC V LV
Sbjct: 426 DLILLTESYDVRLIENVDMLPQTPRCECVVKLV 458


>gi|289435088|ref|YP_003464960.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171332|emb|CBH27874.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 453

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N+++N       ++E    
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARTNAELNNLSNTTFETGKAEEVIPT 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ ILS   +   ++   D FP T H+E   +L
Sbjct: 418 DMKILSDGGYEANQVQPVDMFPMTTHIEAVTVL 450


>gi|254374038|ref|ZP_04989520.1| RNA methyltransferase [Francisella novicida GA99-3548]
 gi|151571758|gb|EDN37412.1| RNA methyltransferase [Francisella novicida GA99-3548]
          Length = 449

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441


>gi|15605800|ref|NP_213177.1| RNA methyltransferase [Aquifex aeolicus VF5]
 gi|50401329|sp|O66617|Y257_AQUAE RecName: Full=Uncharacterized RNA methyltransferase aq_257
 gi|2982968|gb|AAC06582.1| RNA methyltransferase (TrmA-family) [Aquifex aeolicus VF5]
          Length = 425

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 18/186 (9%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YR   +SF Q N  +    L+ VL  ++  +  L +L+CG G F++ L+   + +   + 
Sbjct: 251 YRVSNDSFFQVNYTLWEDFLKEVLDFSESYKKGL-DLHCGVGFFTIPLSEQGNFIEGADA 309

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +++ A YN   N+ +NV  +   +  F    RR  E   L            + VDP
Sbjct: 310 NPSAIKDAEYNAKINNRDNV--IFEEATAFKHLKRRIGEVINL------------VVVDP 355

Query: 300 PRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356
           PRSGL      ++       I+YISCNP +  RDL IL+   + ++RL L D FP T H+
Sbjct: 356 PRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFPQTYHI 415

Query: 357 ECGVLL 362
           E   LL
Sbjct: 416 ESIALL 421


>gi|148264841|ref|YP_001231547.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146398341|gb|ABQ26974.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 470

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 22/189 (11%)

Query: 186 SFTQPNAG----INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           SF Q N+G    I   + EW   A  G +  +L+LYCG G  SL LA     VL +E+ +
Sbjct: 297 SFFQVNSGAARIIYEKVREW--GALTGKE-RVLDLYCGIGGISLFLAGKAREVLGIEVVE 353

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A  N     +NN++  R  + +  + +   RE     D+         + ++PPR
Sbjct: 354 AAVADAEMNA---QLNNIRNCRFKAGDVARLLGELREEGEKVDL---------VILNPPR 401

Query: 302 SGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            G D+  +    A     I+Y+SC+P +L  DL IL+   +    +   D FP T H+E 
Sbjct: 402 KGCDEQVLRETAAIGPQKIIYVSCSPQTLSHDLDILAALGYRTTEIQPVDMFPQTPHVED 461

Query: 359 GVLLVRKPS 367
             LLV+  S
Sbjct: 462 VALLVKMKS 470


>gi|262038379|ref|ZP_06011756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia
           goodfellowii F0264]
 gi|261747597|gb|EEY35059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia
           goodfellowii F0264]
          Length = 466

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 14/156 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ + G G  ++ L+    + + +E  + SV AA      N++ NV+ ++   +     
Sbjct: 322 VIDAFSGTGTIAMALSSKVKKAIGIESVESSVIAANQTAEENNIKNVEFIKGKVERVLPD 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           + + +E N +          + I  DPPR G+D+  +   +    P I+YISCNP +  R
Sbjct: 382 VLK-KEGNSV----------EAIIFDPPRRGIDEKALKSSVKNKIPKIVYISCNPSTFAR 430

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D  +L    +T+++++  D FP   H+E   LL RK
Sbjct: 431 DCKLLMENGYTLKKVSAVDMFPQVNHIEIVGLLERK 466


>gi|95930707|ref|ZP_01313440.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
           684]
 gi|95133187|gb|EAT14853.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
           684]
          Length = 467

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 24/185 (12%)

Query: 186 SFTQPN----AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           SF Q N    A I   +  W   A  G +   ++LYCG G  ++ LA    +V  +EI +
Sbjct: 291 SFFQVNNRQAARIYAQVQSW---ADLGPKDTAVDLYCGVGGIAMHLATSGAKVTGIEINE 347

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            ++  A+     N + N + +   + E    M+RE                K   V+PPR
Sbjct: 348 DAIFNAKAAAELNELGNCRFIVGDAGEILHDMQRELS------------PLKVAVVNPPR 395

Query: 302 SGLDD---ATVGMVQAYPHILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHME 357
            G  +   AT+G ++    ++Y+SCNP SL RDL +L+    T+E L   D FP T H+E
Sbjct: 396 GGCSEEIIATLGQLRPQT-LIYVSCNPYSLGRDLHLLTQQGFTVEELQPVDMFPQTAHVE 454

Query: 358 CGVLL 362
             V L
Sbjct: 455 SVVRL 459


>gi|325185750|emb|CCA20230.1| tRNA (uracil5)methyltransferase putative [Albugo laibachii Nc14]
          Length = 798

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 32/176 (18%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L ++ CG G   L  A+   +V+ +EI K + E A  N   N + N+  V   ++E    
Sbjct: 633 LYDVCCGTGTIGLCCAKDAGKVIGIEICKAATEDAERNAILNQIKNISFVNDKAEEV--- 689

Query: 273 MRREREFNRLKDIDIHSYRFK-------TIFVDPPRSGLDDATVGMVQAYP---HILYIS 322
                    +KDI   + +++       T+ +DPPR+GL    +  ++A P    I+Y+S
Sbjct: 690 ---------MKDILQTATQYEGTQMDSVTVVIDPPRAGLHYKVLRALRACPVVRRIVYVS 740

Query: 323 CNP-DSLCRDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVRKPSG 368
           CNP  SL +D ++L    T           R A  D FP+T H E  V+  R  SG
Sbjct: 741 CNPTQSLIQDSAMLCGPKTSALVGEAFCPVRAAAVDMFPHTPHCEMIVVFERGNSG 796


>gi|224456895|ref|ZP_03665368.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370321|ref|ZP_04986326.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874638|ref|ZP_05247348.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|151568564|gb|EDN34218.1| hypothetical protein FTBG_00076 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840637|gb|EET19073.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella
           tularensis subsp. tularensis MA00-2987]
          Length = 449

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441


>gi|89256815|ref|YP_514177.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|115315201|ref|YP_763924.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502981|ref|YP_001429046.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009854|ref|ZP_02274785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254368098|ref|ZP_04984118.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|290953511|ref|ZP_06558132.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313203|ref|ZP_06803862.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122324802|sp|Q0BKU7|RUMA_FRATO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122500404|sp|Q2A275|RUMA_FRATH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|89144646|emb|CAJ79970.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|115130100|gb|ABI83287.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253908|gb|EBA53002.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|156253584|gb|ABU62090.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 449

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441


>gi|317124930|ref|YP_004099042.1| 23S rRNA m(5)U-747 methyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315589018|gb|ADU48315.1| 23S rRNA m(5)U-747 methyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 394

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 90/192 (46%), Gaps = 20/192 (10%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD----RVLA 236
           NSF Q N  +   +     EWV    +     +L+LYCG G F+L  AR       RV+ 
Sbjct: 208 NSFFQTNTEVASALYRQVDEWV---DRVDPAQVLDLYCGVGGFALHAARSGRLGRRRVMG 264

Query: 237 VEIAKPSVEAARYNIAA--NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           VE++  +VE+AR + A      +++  V   S + T A       +       H+     
Sbjct: 265 VEVSPDAVESARRSAAELRRQHSDLGPVCFQSGDATAAGALGGAGSEEARPGAHTL---- 320

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+     G ++A    H++Y SCN DSL RDL  L +    E   LFD FP 
Sbjct: 321 VIVNPPRRGIGPDLAGRLEASQVGHVVYSSCNVDSLARDLEALPSFSARE-ARLFDMFPQ 379

Query: 353 TRHMECGVLLVR 364
           T H E  VLL R
Sbjct: 380 TSHHEVAVLLER 391


>gi|326791294|ref|YP_004309115.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
           5427]
 gi|326542058|gb|ADZ83917.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
           5427]
          Length = 451

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 20/156 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G  + ++A    +V  +EI + +++ A+ N   NH+ N   +         A
Sbjct: 312 VFDLYCGTGTITQIMATRAKKVYGIEIVEEAIDKAKENAIFNHLTNCHFI---------A 362

Query: 273 MRREREFNRLKDI-DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                E ++LK+  DI       I +DPPR G+    +  +  +    +LYISC P SL 
Sbjct: 363 GDVMVEVDQLKETPDI-------IILDPPRDGIHPKAIQKIINFGAKELLYISCKPTSLT 415

Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL IL    + I+++   D FP T H+E  V L +
Sbjct: 416 RDLPILKEAGYHIDKVLCVDMFPQTPHVETVVKLSK 451


>gi|254369699|ref|ZP_04985709.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122658|gb|EDO66787.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 449

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKDYKLISAGVMDMFPHTMHVE 441


>gi|222153321|ref|YP_002562498.1| RNA methyltransferase [Streptococcus uberis 0140J]
 gi|222114134|emb|CAR42611.1| putative RNA methyltransferase [Streptococcus uberis 0140J]
          Length = 453

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 16/189 (8%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVE 238
           YR    SF Q N  +   + +  +  ++  + D+ ++ Y G G   L  A++  +V  VE
Sbjct: 274 YRISAQSFYQVNTLMAEKLYQTAIDFSELSKDDVVIDAYSGIGTIGLSFAKNVKKVYGVE 333

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           + + +V+ A+ N   N + N   V  S++   +   +E              +   I VD
Sbjct: 334 VIEAAVKDAQKNAERNGIRNATYVVDSAESAMEKWTKE------------GIKPSVILVD 381

Query: 299 PPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355
           PPR GL ++ +   V   P  I Y+SCNP ++ RD+       + ++++   D FP+T H
Sbjct: 382 PPRKGLTESFIEASVAMKPQKITYVSCNPATMARDIKRYQELGYDLKKVQPVDLFPHTHH 441

Query: 356 MECGVLLVR 364
           +EC VL+ R
Sbjct: 442 VECVVLMSR 450


>gi|169825121|ref|YP_001692732.1| RNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|167831926|dbj|BAG08842.1| RNA methyltransferase [Finegoldia magna ATCC 29328]
          Length = 403

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 20/156 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G  ++ +       + VE+ K +V+ A  N   N++ +++ +   S+     
Sbjct: 264 ILDLYCGIGTTTMYIGNG--NTIGVEVVKDAVKDANENKKLNNLESIQFIEEKSENVVGK 321

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           + +E               F  I VDPPR G+D+  V  +       ++YISC+P +L R
Sbjct: 322 LTQEH--------------FDVILVDPPRKGMDEKVVDAIIKSTAKKLVYISCDPATLAR 367

Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+     +E + L D F  T H+E  V L++K
Sbjct: 368 DLKALTENGFGVEDVKLVDMFAKTMHVET-VALIQK 402


>gi|323142713|ref|ZP_08077430.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei
           YIT 12066]
 gi|322417508|gb|EFY08125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei
           YIT 12066]
          Length = 444

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 18/156 (11%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+L CG G  SL+LA HF +V+ VEI + +V AA+ N   N  +NV  +    K+   ++
Sbjct: 303 LDLCCGVGTMSLLLAAHFKKVIGVEIVEEAVAAAKENAQLNKYDNVSFIASDLKKVLSSL 362

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCR 330
             E                K +  DP R+GL +A    +  +     +  I C+  +L R
Sbjct: 363 INE--------------NVKAVIADPARAGLGEANCRALNRFKGEVKLALIFCSLTALKR 408

Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL I L     I ++   D FP++ H+E  VLL +K
Sbjct: 409 DLPILLKGGWKIHQIQGVDMFPHSTHVETLVLLAKK 444


>gi|298243496|ref|ZP_06967303.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM
           44963]
 gi|297556550|gb|EFH90414.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM
           44963]
          Length = 463

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/190 (33%), Positives = 90/190 (47%), Gaps = 17/190 (8%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVE 238
           +R   +SF Q N      ++E  LA  +  + ++ L+ Y G G FS  LA    RVLAVE
Sbjct: 277 FRVSADSFFQVNLTQTAVLVERALAMLEPQRSEVVLDGYSGVGLFSTFLATRAARVLAVE 336

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               +V  AR +   N+ NN+     +S E T     ER  N+L        R     VD
Sbjct: 337 SQPSAVMDARASSTLNNQNNI-----TSLEGTL----ERVLNQLH---YRRERIDLALVD 384

Query: 299 PPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTR 354
           PPR+G     +  +Q  A   I Y+SC+P +L RD++ L T   + +      D FP T 
Sbjct: 385 PPRTGCHPKALQALQTMAPRAICYVSCDPSTLARDIATLCTGGRYRLVSAQPVDMFPQTY 444

Query: 355 HMECGVLLVR 364
           H+EC  LL R
Sbjct: 445 HIECVALLAR 454


>gi|296111048|ref|YP_003621429.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295832579|gb|ADG40460.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 500

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 154/388 (39%), Gaps = 55/388 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QLA K D L Q +  FQ      +          P  YR +A+F +   GD L   M
Sbjct: 133 YAAQLAFKKDVLVQSLEKFQPKGWSTYDLRNTIGMENPYEYRNKAQFPVRKIGDQLRVGM 192

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDYLTSQSDQAIVTL 121
           + + + + +     +P     N   ++++ TIR L   L   ++  D     + + IV  
Sbjct: 193 YKRSSHDLVD----LPVVHTQNPATMKVLRTIRELLDKLSVSIYNEDK-NRGTVKTIVAR 247

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-----------NKTKICL-------- 162
           + H   D   +   +   D        I  I +A           N  +  L        
Sbjct: 248 VSHTTGD--VQLTFVTNTDGFPGDTALIAAINQALPEVTGIFQNFNPGRTSLVWGDETIK 305

Query: 163 --DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +DY++E  TV G+T  ++    +F Q N      + +  L+A      D L++ Y G
Sbjct: 306 LWGKDYIEE--TVMGKT--FQLSPRAFMQLNHTQMSVVYKEALSALNLTHADKLVDAYSG 361

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L LA     V  +EI   +V+ A  N   NH+ N      +++E     + E   
Sbjct: 362 VGTIGLSLADKVGEVRGMEIIPEAVDDANINAKINHIENAHYEIGTAEELFPKWQSE--- 418

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILST 337
                     +    + VDPPR+GLD A    +++  P   +YISCN  +L RDL  L+ 
Sbjct: 419 ---------GWLADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLTK 469

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T   E  V L R+
Sbjct: 470 AYKVEYIQSIDMFPQTARWEGVVKLTRR 497


>gi|187932009|ref|YP_001891994.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712918|gb|ACD31215.1| RNA methyltransferase, trmA family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 449

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441


>gi|332366968|gb|EGJ44708.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 469

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+   +V  VE+   +VE +R N A N + N   V   ++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMKPKKITYISCNVATMAR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LLVR
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 463


>gi|313147266|ref|ZP_07809459.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136033|gb|EFR53393.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 463

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 89/184 (48%), Gaps = 22/184 (11%)

Query: 186 SFTQPNAG--INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           SF Q N+G   N++ +    A   G  G+L+ +LY G G  +  ++R   +V+ +E    
Sbjct: 292 SFYQTNSGQAYNLYKVARDFAGLTG--GELVYDLYTGTGTIANFVSRQARQVIGIEYVPE 349

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSY-RFKTIFVDPP 300
           ++E A+ N   N + N        K+  TQ               I+ Y R   I  DPP
Sbjct: 350 AIEDAKVNAEINGIENTLFFAGDMKDILTQDF-------------INQYGRPDVIITDPP 396

Query: 301 RSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R+G+    V ++  A P  I+Y+SCNP +  RDL +L   + ++ +   D FP+T H+E 
Sbjct: 397 RAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKYRVKAVQPVDMFPHTHHVEN 456

Query: 359 GVLL 362
            VLL
Sbjct: 457 VVLL 460


>gi|54112953|gb|AAV29110.1| NT02FT0992 [synthetic construct]
          Length = 449

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441


>gi|308172666|ref|YP_003919371.1| RNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307605530|emb|CBI41901.1| putative RNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|328552427|gb|AEB22919.1| RNA methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328910776|gb|AEB62372.1| putative RNA methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 466

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   + ++     +  +++ K S++ A+ N   + + N   V  +++ +   
Sbjct: 321 VVDAYCGVGTIGMWVSSGAKEIRGMDVIKESIDDAKKNAKKHGIKNAAYVTGTAEHWLPK 380

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             +R   + VDPPR+G D   +  ++       +Y+SCNP +L +
Sbjct: 381 WTKE------------GFRPDVVIVDPPRTGCDGTFLDTIKKVKPKRFVYVSCNPSTLAK 428

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + +E +   D FP T H+E    LV K S
Sbjct: 429 DLQALSKDYRVEYIQPVDMFPQTAHVEAVAKLVLKSS 465


>gi|327402274|ref|YP_004343112.1| 23S rRNA m(5)U-1939 methyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327317782|gb|AEA42274.1| 23S rRNA m(5)U-1939 methyltransferase [Fluviicola taffensis DSM
           16823]
          Length = 475

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 23/156 (14%)

Query: 211 GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +++L+CG G    ++A+  +   ++ V+I + ++E A+ N   N+++++        +
Sbjct: 328 GVIMDLFCGTGTIGQLVAQRVNAGEIIGVDIVEEAIEDAKRNAKRNNLSHLHFFAADVGK 387

Query: 269 FTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISC 323
           F               + +H     R  TI +DPPR+G+   T+  V A    H++YISC
Sbjct: 388 F---------------LTLHPEYLNRIDTIVLDPPRAGIAPKTLQKVIALGASHLVYISC 432

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
           NP +  RD   L    + + +L+L DQFP+T H+E 
Sbjct: 433 NPSTQARDTETLEKGGYKLTKLSLVDQFPHTSHIEA 468


>gi|269139581|ref|YP_003296282.1| 23S rRNA metyluridine methyltransferase [Edwardsiella tarda EIB202]
 gi|267985242|gb|ACY85071.1| 23S rRNA metyluridine methyltransferase [Edwardsiella tarda EIB202]
 gi|304559469|gb|ADM42133.1| 23S rRNA (Uracil-5-) -methyltransferase RumB [Edwardsiella tarda
           FL6-60]
          Length = 377

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 25/186 (13%)

Query: 185 NSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +         +WV A   G+  ++ +L+CG G F L  A     +  +EI+
Sbjct: 208 QSFFQTNPAVAQALYAQARDWVQAL--GVT-EMWDLFCGVGGFGLHCATPEMTLTGIEIS 264

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR + A   +  V    + S  F                D  S   + + V+PP
Sbjct: 265 AEAIACARRSAAQLGLTQVNFAALDSSAFA---------------DARSAAPQLVLVNPP 309

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+  A    +   A P+ILY SCN  S+ +D+  L+  + +E++ LFD FP+T H E 
Sbjct: 310 RRGIGAALCDYLSRMAPPYILYSSCNAQSMVQDIERLAD-YRLEKVRLFDMFPHTAHYEV 368

Query: 359 GVLLVR 364
             LLVR
Sbjct: 369 LTLLVR 374


>gi|45185942|ref|NP_983658.1| ACR256Cp [Ashbya gossypii ATCC 10895]
 gi|44981732|gb|AAS51482.1| ACR256Cp [Ashbya gossypii ATCC 10895]
          Length = 592

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 23/161 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           L++ YCG+G FS+  ++  DRV+ VE++  SV  A  N   N V N   IV  + K F  
Sbjct: 445 LVDAYCGSGLFSITASKGVDRVIGVEVSADSVAFAERNAKTNGVTNCTFIVGKAEKIFAS 504

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                        ID    R  ++ +DPPR G DD  +  +  Y    I+YISCN  S  
Sbjct: 505 -------------IDTPCDR-TSVILDPPRKGCDDVFLKQLAEYNPARIVYISCNVHSQA 550

Query: 330 RDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD+            + ++ +  FD FP T H+E   +L R
Sbjct: 551 RDVQYFLKETPNGARYKVDSIRGFDFFPQTHHVEGVCVLSR 591


>gi|314934062|ref|ZP_07841425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae
           C87]
 gi|313653173|gb|EFS16932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae
           C87]
          Length = 455

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A  N   N +NN              
Sbjct: 311 VLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKDAEENATKNQLNNTTF----------- 359

Query: 273 MRREREFNRLKDI----DIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326
                E  + +D+         R   + VDPPR G D+  V  +++  P  I+YISCNP 
Sbjct: 360 -----ECGKAEDVILEWKAQGIRPDVVMVDPPRKGCDETFVKTLLKLNPKRIVYISCNPS 414

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD  +L+  + +  +   D FP T H+E   L  RK
Sbjct: 415 TQQRDAQLLANNYHLVEITPVDMFPQTTHIETVALFERK 453


>gi|227508696|ref|ZP_03938745.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191830|gb|EEI71897.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 472

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 156/391 (39%), Gaps = 61/391 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGD----DL 58
           Y +QL  K D ++  +  ++    + ++        +PIHYR +A F I +DG      L
Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPIHYRNKATFQIRNDGQKVIAGL 167

Query: 59  Y----HIMFDQQTK--------ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106
           Y    H + D +T         + MR    M   L I     E  A I    ++RA    
Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVRA---- 223

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
                + +D+A VT I          +   R+    H     + ++   N  K  L   +
Sbjct: 224 ----ATATDEAQVTFITQSKKLLKKHQLLERID---HDLPEVVSVMQNVNPGKTSLV--W 274

Query: 167 VDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK-GIQGDLLELY 217
            +E + +AG+  I   + N        +F Q N  +   + +    A +   +  L++ Y
Sbjct: 275 GEETIHLAGKDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAY 334

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G   L +AR    V  ++  K +V+ A  N   N + N             A+    
Sbjct: 335 SGVGTIGLSVARQVREVRGMDTIKDAVDDANANAIKNGIVN-------------ALYEVG 381

Query: 278 EFNRLKDIDIH-SYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI 334
           E  +L  + I   +    + VDPPR+GL D+ +  +    P   +YISCNP +L RDL  
Sbjct: 382 EAEKLLPLWIEDGWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVK 441

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L+  + +E +   D  P T   EC V   +K
Sbjct: 442 LTRKYNVEYIQSVDLMPQTSRCECVVKFKKK 472


>gi|313637426|gb|EFS02888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
           S4-171]
          Length = 453

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N+++N       ++E    
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLSNTTFETGKAEEVIPT 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ ILS   +   ++   D FP T H+E   +L
Sbjct: 418 DMKILSDGGYEANQVQPVDMFPMTTHIEAVTVL 450


>gi|302537426|ref|ZP_07289768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. C]
 gi|302446321|gb|EFL18137.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. C]
          Length = 443

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER    GRT  YR     F Q +      +++ V+      +G++ L+LYCG G 
Sbjct: 251 RPFVRERAD--GRT--YRVGMGGFWQVHPQAADTLIKAVMQGLMPRKGEMALDLYCGVGI 306

Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA        VL +E  K +VE AR+N+A     +   VR+   +   A+ R    
Sbjct: 307 FAGALAERLGETGAVLGIESGKRAVEDARHNLA-----DFPRVRIEQGKVDTALPR---- 357

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS- 336
             + + D+       + +DPPR+G    TV  + +     I Y++C+P +L RDL     
Sbjct: 358 TGITECDL-------VVLDPPRAGAGKQTVRHIASLSARRIAYVACDPAALARDLGYFKD 410

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + +  L +FD FP T H+EC  +L
Sbjct: 411 AGYRVRTLRVFDLFPMTHHVECVAIL 436


>gi|258515464|ref|YP_003191686.1| RNA methyltransferase, TrmA family [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779169|gb|ACV63063.1| RNA methyltransferase, TrmA family [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 458

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 18/185 (9%)

Query: 185 NSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           NSF Q N    + + +  L  A  KG +  +L+ YCG G  ++  + +  +V  +E    
Sbjct: 286 NSFYQINPKQTIKLYDKALEYAELKGNE-TVLDAYCGIGTIAMYFSANARKVTGLESLNI 344

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V+ AR N A N +NNV+ +     E  + +    E N   DI         I +DPPR 
Sbjct: 345 AVKDARENAALNRLNNVEFL---CGEVEKLLPEFAERNNNVDI---------IILDPPRQ 392

Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECG 359
           G     +  +     P I+Y+SCNP +L RDL +L    + I  +   D FP T H+E  
Sbjct: 393 GCKQVVLEAIAKMRIPKIIYVSCNPGTLARDLGLLDKLGYGIIEVQPVDMFPQTSHIEIC 452

Query: 360 VLLVR 364
             L +
Sbjct: 453 TFLSK 457


>gi|307244550|ref|ZP_07526655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492077|gb|EFM64125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           stomatis DSM 17678]
          Length = 455

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 28/210 (13%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNA-GINV-HMLEWVLAATKGIQGDLLELY 217
           DE   + GR   Y ++          SF Q N  G  V + +    A  KG    + +LY
Sbjct: 257 DELRILHGRDYFYEEVLGLRFKISPFSFFQTNTKGAEVLYTIAREFAGDKGDGKVVFDLY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G    ++A+   +V  +E+ + +V AA +N   N ++N + +     +   ++  + 
Sbjct: 317 SGTGTIGQLMAKTAKKVYGIELVEEAVVAANHNAGLNKLDNCEFIAGDVAKLVTSLPEKA 376

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSI 334
           +                I VDPPR+G+    V  +  +    I+Y+SCNP SL  + +  
Sbjct: 377 DL---------------IIVDPPRAGILGNGVKDIAEFGAGEIVYVSCNPKSLVENVVEF 421

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            S  + +++L L D FP   H E   LLVR
Sbjct: 422 ESRGYKLDKLKLMDMFPSGPHCESVALLVR 451


>gi|282877944|ref|ZP_06286753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis
           ATCC 35310]
 gi|281299945|gb|EFA92305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis
           ATCC 35310]
          Length = 508

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 14/188 (7%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLA 236
           L ++    SF Q N     H+        +    +L+ +LY G G  +  +AR    V+ 
Sbjct: 329 LKFKVAAKSFYQTNTNQAYHLYSVAREFAQLTGKELVYDLYTGTGTIANFVAREAREVIG 388

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E  + +++ A+ N AAN ++N +      K+         EF     I  H  R   I 
Sbjct: 389 IEYVEDAIKDAKVNSAANDIHNTQFYAGDMKDILT-----EEF-----IAEHG-RPDVII 437

Query: 297 VDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
            DPPR+G+  D    ++ A P  I+Y+SCNP +  RDL +L   + +  +   D FP+T 
Sbjct: 438 TDPPRAGMHPDVVRTILGAAPQRIVYVSCNPATQARDLQMLDEQYKVMAVQPVDMFPHTP 497

Query: 355 HMECGVLL 362
           H+E  VLL
Sbjct: 498 HVENVVLL 505


>gi|322385303|ref|ZP_08058948.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
           ATCC 51100]
 gi|321270562|gb|EFX53477.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
           ATCC 51100]
          Length = 453

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L LA    +V  VE+   +VE ++ N   N + +   V   +++  Q 
Sbjct: 308 VLDAYSGIGTIGLSLADRVQQVYGVEVIPEAVENSQRNAELNGITSASYVCAPAEKAIQT 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                  N+    D+       I VDPPR GL ++ +   V   P  I+YISCNP ++ R
Sbjct: 368 W-----LNQGVKADV-------ILVDPPRKGLTESFITSSVSMEPQRIVYISCNPATMAR 415

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC VLL RK
Sbjct: 416 DIKLYQGQGYELKKVQPVDLFPQTHHVECVVLLQRK 451


>gi|33240415|ref|NP_875357.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|50401517|sp|Q7VBX7|Y965_PROMA RecName: Full=Uncharacterized RNA methyltransferase Pro_0965
 gi|33237942|gb|AAQ00010.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 419

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 104/218 (47%), Gaps = 35/218 (16%)

Query: 158 TKICLDRDYVDERLT----VAGRTLIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQ 210
           T+I   RDY+ ++      + G T        SF Q N   A   ++ +  +++ T  I 
Sbjct: 223 TEILTGRDYIYDKFCHMDILIGST--------SFFQVNLVEAEKAINCIRNIISNTNKIV 274

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +++ Y G G  S+ LA    RV+ +EI     EA    I    +NN+K +   +++ T
Sbjct: 275 -RIIDAYSGIGTMSIPLASDGYRVIGIEINN---EAHEIAIRNAEINNIKTITFENQDVT 330

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSL 328
           + + +    N              + +DPPR GLD + + ++ +  P HI Y+SCNP +L
Sbjct: 331 KYLPKILLPNDF------------LILDPPRKGLDPSLIDVITKLMPIHICYLSCNPATL 378

Query: 329 CRDLSILSTTH--TIERLALFDQFPYTRHMECGVLLVR 364
            RDLS++   H  +I  +  FD FP T H+E  V L R
Sbjct: 379 ARDLSLILREHKYSIISITAFDFFPQTTHLETLVYLKR 416


>gi|322388962|ref|ZP_08062533.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 903]
 gi|321144331|gb|EFX39738.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 903]
          Length = 450

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   ++E A+YN       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             YR   + VDPPR+GL    +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYQE------------GYRANAVIVDPPRTGLGTKLIETLLHYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + +E +   D FP+T   E  V LV+K
Sbjct: 416 DLVALTKVYQVEYIQSVDMFPHTARTEAVVKLVKK 450


>gi|296877010|ref|ZP_06901054.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432045|gb|EFH17848.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 450

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   ++E A+YN       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             YR   + VDPPR+GL    +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYQE------------GYRANAVIVDPPRTGLGTKLIETLLHYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + +E +   D FP+T   E  V LV+K
Sbjct: 416 DLVALTKVYQVEYIQSVDMFPHTARTEAVVKLVKK 450


>gi|294497204|ref|YP_003560904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
           B1551]
 gi|294347141|gb|ADE67470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
           B1551]
          Length = 461

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 101/213 (47%), Gaps = 27/213 (12%)

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           + DE  T+AG+++I   + +        +F Q N    V + + V  A   + G+  +++
Sbjct: 262 FGDETFTLAGKSVIQETLGDISFELSARAFFQLNPLQTVKLYDEVKKAA-ALTGNEKIVD 320

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G   L LA+    +  ++  + S+  AR N   +   +   V   ++++     +
Sbjct: 321 AYCGVGTIGLWLAKDAKEIRGMDTIEESIVDARKNAKDHGFEHATYVTGPAEKWMPKWVK 380

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDL 332
           E             ++   I VDPPR+G DD    T+  V++   ++Y+SCNP +L +D+
Sbjct: 381 E------------GWKPDLIVVDPPRTGCDDKLLKTILQVKSK-KVVYVSCNPSTLAKDV 427

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             LS  + ++ +   D FP+T H+E  V L  K
Sbjct: 428 QQLSKAYHVDYIQPVDMFPHTAHVENVVSLTLK 460


>gi|148657992|ref|YP_001278197.1| (Uracil-5)-methyltransferase [Roseiflexus sp. RS-1]
 gi|148570102|gb|ABQ92247.1| (Uracil-5)-methyltransferase [Roseiflexus sp. RS-1]
          Length = 407

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 21/179 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           N+F Q N  + + +LE V  A  G +G+    L +LY G G  +L +A   D+++ VE  
Sbjct: 235 NTFFQNNVWLLMPLLEAVRDAVAG-EGERARALADLYGGVGTIALFVADLADQIVCVESV 293

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + SV  AR NIA     ++ IV+    +   A+R ER              F  +  DPP
Sbjct: 294 EESVRLARENIARAGFEHIAIVK---ADVADALR-ERTRGA----------FDIVIADPP 339

Query: 301 RSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           R+GL  D    +++  P  I+YISCNP +   D+ +L+  + +  L  +D FP+T H+E
Sbjct: 340 RTGLGPDVCRELLRLRPQRIVYISCNPLTQRDDVRMLTEAYRLTSLRGYDMFPHTPHLE 398


>gi|322372576|ref|ZP_08047112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C150]
 gi|321277618|gb|EFX54687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C150]
          Length = 451

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +VE A+ N   N + N   V  S++    A
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M +  +     D+         I VDPPR GL ++ +   V   P  I Y+SCNP ++ R
Sbjct: 365 MAKWSKDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVALLVK 450


>gi|317495594|ref|ZP_07953962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum
           M424]
 gi|316914408|gb|EFV35886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum
           M424]
          Length = 544

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 18/202 (8%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ E++   G T  Y     SF Q N G    + + V+      + ++ L+ +CG G  
Sbjct: 266 DYIVEKI---GDTK-YELSAKSFFQLNPGATKKLYDKVVEFADLRETNIVLDAFCGVGTI 321

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
              ++R    V  V+I + +++ A  N+  N++ N   V   + +     +++       
Sbjct: 322 GQYVSRKCHEVYGVDIVEDAIKDANNNVKLNNLTNCIYVAGDANKIVPRWKKK------- 374

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTHTIE 342
                   F    VDPPR+GL      ++      I+Y+SCNP +L RDL +L+  + I 
Sbjct: 375 -----GINFDVAIVDPPRTGLGHLAKNLLDVDAKKIVYVSCNPSTLARDLKVLTRKYKIR 429

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+   D FP T  +E   LL +
Sbjct: 430 RIQPIDMFPGTAAVETVALLSK 451


>gi|295108003|emb|CBL21956.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus obeum A2-162]
          Length = 455

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 14/146 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+    V  VEI   ++E AR N   N ++NV+     ++E    + 
Sbjct: 311 DLYCGIGTISLFLAQKAKFVRGVEIVPAAIEDARRNAHLNEIDNVEFFVGKAEE---VLP 367

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDL 332
           RE E N +            I VDPPR G D+  +  + +  P  ++Y+SC+  +L RDL
Sbjct: 368 REYEKNGV--------YADVIVVDPPRKGCDEMLLKTILKMQPKRVVYVSCDSATLARDL 419

Query: 333 SILS-TTHTIERLALFDQFPYTRHME 357
             L    + ++++   DQFP T H+E
Sbjct: 420 RFLCDNGYELKKVCGVDQFPQTVHVE 445


>gi|167625624|ref|YP_001675918.1| 23S rRNA methyluridine methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|167355646|gb|ABZ78259.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella
           halifaxensis HAW-EB4]
          Length = 358

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 16/154 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L +L+CG G F L  A     +  +EI+  ++  A+ +  A  +  V    + S  F Q 
Sbjct: 217 LWDLFCGVGGFGLHCASKQSALTGIEISAEAITCAKLSAEAMGLTQVNFTALDSTGFAQG 276

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                     KD      +   + V+PPR G+ ++    + A+    ILY SCNP +L +
Sbjct: 277 CDA-------KD------KPDVVIVNPPRRGIGESLCQSLSAFAPKAILYSSCNPHTLAK 323

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL+ +   + ++++ LFD FP+T H E  V+L++
Sbjct: 324 DLACIQ-GYRVQKVQLFDMFPHTDHFEVLVMLLK 356


>gi|314923388|gb|EFS87219.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL001PA1]
          Length = 393

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+        ++     F Q + G    + + V+   K 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTAHVGQRRWKVGAGGFWQMHPGAAEALADAVIGGLKP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRRGAGKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|153854051|ref|ZP_01995384.1| hypothetical protein DORLON_01375 [Dorea longicatena DSM 13814]
 gi|149753433|gb|EDM63364.1| hypothetical protein DORLON_01375 [Dorea longicatena DSM 13814]
          Length = 470

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 9/155 (5%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + +LYCG G  SL LA+   +V  VEI   +++ A+ N   N + N +     
Sbjct: 310 GLTGNEAVWDLYCGIGTISLFLAKKAKQVYGVEIVPQAIDDAKNNAKINDITNAEFYVGK 369

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323
           ++E      +E E    K  +  +     I VDPPR G +++ +  +V   P  ++Y+SC
Sbjct: 370 AEEVLPEYYKEYE----KTHNGETAHADVIVVDPPRKGCEESLLQTIVDMQPEKVVYVSC 425

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +  +L RD+  L +  + ++ +   DQFP+T H+E
Sbjct: 426 DSATLARDVKFLRANGYELKDVTPVDQFPHTVHVE 460


>gi|291518105|emb|CBK73326.1| 23S rRNA m(5)U-1939 methyltransferase [Butyrivibrio fibrisolvens
           16/4]
          Length = 460

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 107/217 (49%), Gaps = 25/217 (11%)

Query: 157 KTKICLDRDYVDERLTVA-GRTLIYRQIENSFTQPNAGINVHMLEWVLAAT---KGIQG- 211
           +TK+   ++ + + +T+  G T+ +    NSF Q    +N   +E + +      G+ G 
Sbjct: 259 ETKVLYGKEAIRDTITLTNGDTIAFDISANSFYQ----VNHDQMERLYSKALEYAGLTGK 314

Query: 212 -DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            ++ +LYCG G  SL +A+H   V+ +E+   ++E A+ N   N ++N +     ++   
Sbjct: 315 EEVWDLYCGIGTISLSMAKHAGHVIGIEVVPQAIENAKANAKLNGLDNTEFYCGEAEVVL 374

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSL 328
             +     + ++   D+       I VDPPR G D   +  M++  P  I+Y+SC+  +L
Sbjct: 375 PEI-----YEKMSHPDV-------IMVDPPRKGCDVVALDTMIKMQPERIVYVSCDSATL 422

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RDL  L    + +++  + DQF +T H E   +L +
Sbjct: 423 ARDLKHLEENGYHLQKYTVCDQFGHTMHTETVAILAK 459


>gi|41614849|ref|NP_963347.1| hypothetical protein NEQ053 [Nanoarchaeum equitans Kin4-M]
 gi|51316718|sp|Q74N58|Y053_NANEQ RecName: Full=Uncharacterized RNA methyltransferase NEQ053
 gi|40068573|gb|AAR38908.1| NEQ053 [Nanoarchaeum equitans Kin4-M]
          Length = 447

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 24/184 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           NSF Q N+   V++++ V    +  + D+ L+LY G G FSL +A    +V+ +EI + +
Sbjct: 280 NSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYSGVGLFSLQIANEVKKVIGIEIVEEA 339

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A+ N + N+++   I   S  E    ++  +                 I VDPPR+G
Sbjct: 340 VEMAKLNASINNIDAEFIA--SPVEKAPIIKANK-----------------IIVDPPRAG 380

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L +  +  ++      I+Y+SCNP +  RD++ L     I+   L D FP T H+E  V+
Sbjct: 381 LTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKLKGYKIIDMQPL-DMFPNTPHIE-NVI 438

Query: 362 LVRK 365
           L++K
Sbjct: 439 LMKK 442


>gi|198274964|ref|ZP_03207496.1| hypothetical protein BACPLE_01123 [Bacteroides plebeius DSM 17135]
 gi|198272411|gb|EDY96680.1| hypothetical protein BACPLE_01123 [Bacteroides plebeius DSM 17135]
          Length = 472

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+    + L  V     G+ G+ L  +LY G G  +  +AR   +V+ +E    +
Sbjct: 301 SFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIANFVARQARKVVGIEYVPEA 359

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N A N ++N        K+               D      R   I  DPPR+G
Sbjct: 360 IEDAKVNSALNGIDNTLFYAGDMKDILT-----------NDFIAEHGRPDVIITDPPRAG 408

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           + +  + ++ A     I+Y+SCNP +  RDL +L   + +  +   D FP+T H+E  V 
Sbjct: 409 MHNDVIDVILAAEPKRIVYVSCNPATQARDLQLLDGKYKVTAVQPVDMFPHTHHVENVVQ 468

Query: 362 LVRK 365
           L R+
Sbjct: 469 LERR 472


>gi|125718271|ref|YP_001035404.1| RNA methyltransferase [Streptococcus sanguinis SK36]
 gi|125498188|gb|ABN44854.1| RNA methyltransferase, putative [Streptococcus sanguinis SK36]
          Length = 456

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+   +V  VE+   +VE +R N A N + N   V   ++E  Q 
Sbjct: 308 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQ- 366

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 367 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LLVR
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 450


>gi|256419908|ref|YP_003120561.1| RNA methyltransferase, TrmA family [Chitinophaga pinensis DSM 2588]
 gi|256034816|gb|ACU58360.1| RNA methyltransferase, TrmA family [Chitinophaga pinensis DSM 2588]
          Length = 472

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 34/220 (15%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLL 214
           + K    + YV+E+L        ++    SF Q N   G  ++ +    A   G +  + 
Sbjct: 273 EPKTYFGKGYVEEKL----EDFTFKIGPKSFFQTNTYQGEALYQVTRDFAGLTGTE-IVY 327

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G+  + ++R   +V+ +E+ K +++ A                   +   +   
Sbjct: 328 DLYCGTGSIGIFVSRQAGKVVGIELIKEAIDDA------------------IENAARNNV 369

Query: 275 REREFNRLKDIDIHSYRF-------KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325
              +F     +DI +  F         +  DPPR+G+ +  V  +   A P I+Y+SCNP
Sbjct: 370 NNAQFYAGDVVDICNDAFFAQHGQPDVVITDPPRAGMHEKLVNKLLEIAAPRIVYVSCNP 429

Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +  RDL++L   ++++++   D FP+T H+E  VLL ++
Sbjct: 430 ATQARDLALLDVMYSVKKIQPVDMFPHTHHIENVVLLEKR 469


>gi|323345673|ref|ZP_08085896.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269]
 gi|323093787|gb|EFZ36365.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269]
          Length = 475

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 18/185 (9%)

Query: 186 SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N     H+      LA+  G +  + +LY G G  +  +A    +V+ +E    +
Sbjct: 301 SFYQTNTEQAFHLYSVARELASLTGKEL-VYDLYTGTGTIANFVAGRAKKVIGIEYVPEA 359

Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +E A+ N A N + N        K+  T    RE              +   I  DPPR+
Sbjct: 360 IEDAKVNSAVNRIENTLFFAGDMKDILTDDFIREHG------------QPDVIITDPPRA 407

Query: 303 GL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           G+  D    +++A P  I+Y+SCNP +  RDL+ L   + ++ +   D FP+T H+E  V
Sbjct: 408 GMHTDVIQTILRANPQRIVYVSCNPATQARDLAALDMQYKVDIVQPVDMFPHTPHVENVV 467

Query: 361 LLVRK 365
           LL RK
Sbjct: 468 LLTRK 472


>gi|153811043|ref|ZP_01963711.1| hypothetical protein RUMOBE_01434 [Ruminococcus obeum ATCC 29174]
 gi|149832931|gb|EDM88014.1| hypothetical protein RUMOBE_01434 [Ruminococcus obeum ATCC 29174]
          Length = 430

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 24/217 (11%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
             K  +   + Y+++ L       I+R    SF Q N      +    +    G+ G   
Sbjct: 230 GEKETVLYGKGYIEDELC----GHIFRISSKSFYQVNTAQTEKLYTKAIELA-GLTGKER 284

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L+ +     V++VE+   +V+ A  N   N + NV   +  +  F + 
Sbjct: 285 VIDAYCGIGTIGLIASDKAKEVISVELNPDAVKDAIVNAKRNGIKNVHFYQNDAGVFMRQ 344

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           M  E E       D+       +F+DPPRSG D+  +  V       ++Y+SC+P +L R
Sbjct: 345 MADEGE-----SADV-------VFMDPPRSGSDEKFLSSVVTLNPKRVVYVSCDPTTLAR 392

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365
           DL  L T H    +     D FP T H+E   LL RK
Sbjct: 393 DLKYL-TKHGYSAVTAVPVDMFPATEHVETVCLLSRK 428


>gi|160933694|ref|ZP_02081082.1| hypothetical protein CLOLEP_02555 [Clostridium leptum DSM 753]
 gi|156867571|gb|EDO60943.1| hypothetical protein CLOLEP_02555 [Clostridium leptum DSM 753]
          Length = 371

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 19/162 (11%)

Query: 208 GIQGD--LLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           G+ G   +++ YCG G   LV A R   +V+ VE+ + +V+ A  N   N ++N      
Sbjct: 212 GLTGSETVIDAYCGIGTIGLVAAKRGAKKVVGVELNRDAVKDAIENAKLNKLSNAWFCAG 271

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYIS 322
            + EF   M  E+E       D+       +F+DPPR+G D   +  ++   P  ++YIS
Sbjct: 272 DAGEFMLEMSLEKE-----PADV-------VFMDPPRAGSDRTFLSSLIALSPQKVVYIS 319

Query: 323 CNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGVLL 362
           CNP++  RDL  L++   + + R+   D FP+T H+E   LL
Sbjct: 320 CNPETQQRDLRYLTSKGPYRVTRIQPVDMFPHTNHVETVALL 361


>gi|313830386|gb|EFS68100.1| conserved domain protein [Propionibacterium acnes HL007PA1]
 gi|314955688|gb|EFT00090.1| conserved domain protein [Propionibacterium acnes HL027PA1]
          Length = 206

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+  R  +         F Q + G    + + V+ + + 
Sbjct: 5   CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 64

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 65  QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGGR------------ 112

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 113 -FT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 164

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 165 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 205


>gi|223935813|ref|ZP_03627728.1| RNA methyltransferase, TrmA family [bacterium Ellin514]
 gi|223895414|gb|EEF61860.1| RNA methyltransferase, TrmA family [bacterium Ellin514]
          Length = 440

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 15/150 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+++YCG G FSL L    +  + VE+ + +++AAR N    ++ N + V   ++E    
Sbjct: 289 LVDVYCGVGFFSLELGDLVEGFVGVELDQLAIKAARRNAEKRNLKNGEFVTGRAEEMLPG 348

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPH-ILYISCNPDSLCR 330
           + +             S    T+ +DPPR+G L ++   + Q  P+ ++Y+SC+P ++ R
Sbjct: 349 LMQR-----------FSPEATTVLIDPPRTGCLPESLELLRQTRPNQLIYVSCHPATMAR 397

Query: 331 DLSILSTTHTIERLALF--DQFPYTRHMEC 358
           DL++L      E + +   D FP T H+EC
Sbjct: 398 DLNVLCAEGVFELVKVIPCDMFPQTAHVEC 427


>gi|76154235|gb|AAX25727.2| SJCHGC06451 protein [Schistosoma japonicum]
          Length = 181

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 24/171 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL++ CG G   L LA+HF RV+ ++I   ++E A+ N   N + NV+ +   +++    
Sbjct: 23  LLDVCCGTGTIGLCLAKHFHRVIGIDICNSAIEDAKLNAQLNDIQNVEFIAGKAED---- 78

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDSLC 329
           M R    N  K  D+      ++ VDPPR+GL ++ + +++       I+YISCN +   
Sbjct: 79  MLRNVIQNLPKSCDL------SVVVDPPRAGLHNSVIQILRNCKQINRIIYISCNMEYAV 132

Query: 330 RD--------LSILSTTHTIERLA-LFDQFPYTRHMECGVLLVRKPSGWHQ 371
            +            + T  I  +A   D FP TRH E  +LL R P  W+ 
Sbjct: 133 GNFIYFAKPCFKKFTGTPFIPTMAEAVDIFPQTRHTEVILLLERIP--WNS 181


>gi|53713830|ref|YP_099822.1| RNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60682048|ref|YP_212192.1| putative RNA methyltransferase [Bacteroides fragilis NCTC 9343]
 gi|253565800|ref|ZP_04843255.1| RNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|265764175|ref|ZP_06092743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_16]
 gi|52216695|dbj|BAD49288.1| RNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60493482|emb|CAH08268.1| putative RNA methyltransferase [Bacteroides fragilis NCTC 9343]
 gi|251946079|gb|EES86486.1| RNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|263256783|gb|EEZ28129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_16]
          Length = 472

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 20/183 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+    + L  V     G+ GD L  +LY G G  +  ++R   +V+ +E    +
Sbjct: 301 SFYQTNSE-QAYNLYKVARDFAGLTGDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEA 359

Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPR 301
           +E A+ N   N + N        K+  TQ               I+ Y R   I  DPPR
Sbjct: 360 IEDAKVNAEINGIENTLFFAGDMKDILTQDF-------------INQYGRPDVIITDPPR 406

Query: 302 SGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           +G+    V ++  A P  I+Y+SCNP +  RDL +L   + ++ +   D FP+T H+E  
Sbjct: 407 AGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKYRVKAVQPVDMFPHTHHVENV 466

Query: 360 VLL 362
           VLL
Sbjct: 467 VLL 469


>gi|325297416|ref|YP_004257333.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM
           18170]
 gi|324316969|gb|ADY34860.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM
           18170]
          Length = 474

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 94/203 (46%), Gaps = 24/203 (11%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G  +
Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVARDFAGLTGNELVYDLYTGTGTIA 340

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
             ++R   +V+ +E    ++E A+ N   N + N        K+         +F R   
Sbjct: 341 NFVSRQAKKVIGIEYVPEAIEDAKVNSELNGIKNTLFYAGDMKDILT-----EDFIR--- 392

Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
              H  R   I  DPPR+G+  D    ++ A P  I+Y+SCNP +  RDL +L   + ++
Sbjct: 393 --THG-RPDVIITDPPRAGMHGDVIQVILAAEPERIVYVSCNPATQARDLQLLDVKYKVK 449

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T H+E  VLL +K
Sbjct: 450 AVQPVDMFPHTHHVENVVLLEKK 472


>gi|315084283|gb|EFT56259.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL027PA2]
          Length = 393

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+  R  +         F Q + G    + + V+ + + 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|312868870|ref|ZP_07729056.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
           PB013-T2-3]
 gi|311095610|gb|EFQ53868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
           PB013-T2-3]
          Length = 452

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 22/163 (13%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +++ YCG G  SL +A+H  +V  VEI   ++  A++N             + 
Sbjct: 305 GLDGSQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIADAKHN------------GIK 352

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISC 323
           + EF    + E +F + +   +   +   + VDPPR GL ++ +    +  P  ++Y+SC
Sbjct: 353 NAEFVVG-KAEDQFAKWQAAGL---KPDVVIVDPPRKGLAESLIEATGKMGPQKVIYVSC 408

Query: 324 NPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           NP +L RD+   +    H  + +   DQFP T H+E   LL R
Sbjct: 409 NPATLVRDIQRFAEVGYHVTKPIQPVDQFPQTTHVESVTLLER 451


>gi|297531277|ref|YP_003672552.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
 gi|297254529|gb|ADI27975.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
          Length = 467

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 21/208 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGD 212
            ++T++    +Y+ E L      L +     +F Q N    V + + V   AA  G +  
Sbjct: 269 GDETEVLAGDEYIQETLG----DLSFELSSRAFFQLNPLQTVKLYDEVKKAAALTGTE-R 323

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LAR    V  ++    ++E A+ N   +   N   V   ++ +   
Sbjct: 324 IVDAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAEYWLPK 383

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
             +              ++   I VDPPR G D A +  ++   P  ++Y+SCNP SL R
Sbjct: 384 WVK------------GGWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLAR 431

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           DL  L+  + ++ +   D FP+T H+EC
Sbjct: 432 DLDALAAQYRVDYIQPVDMFPHTAHVEC 459


>gi|123441809|ref|YP_001005793.1| 23S rRNA methyluridine methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|167012648|sp|A1JM74|RUMB_YERE8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|122088770|emb|CAL11576.1| putative RNA methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 375

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 18/155 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    R+  +EI+  ++  AR +     + NV    + S +F  
Sbjct: 236 SMWDLFCGVGGFGLHCADTETRLTGIEISAEAIACARQSADQLGLKNVTFAALDSTQFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A   E +  +L            + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAQLCEYLSQMAPQFILYSSCNAETMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +D+S+L+  + IER+ LFD FP+T H E   LL++
Sbjct: 341 KDISLLA-DYRIERVQLFDMFPHTAHYEVLSLLIK 374


>gi|73662203|ref|YP_300984.1| RNA methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494718|dbj|BAE18039.1| putative RNA methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 453

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +QG+  +L+ YCG G   L +A     V  VE+   ++  A+ N   N   N   V   +
Sbjct: 305 LQGEETVLDTYCGIGTIGLYMAPKAKHVYGVEVVPEAITDAQQNATINQFENTTFVCGKA 364

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCN 324
           +E     + E              R   + VDPPR G D+  +  +++  P  I+YISCN
Sbjct: 365 EEVILKWKSE------------GIRPDVVMVDPPRKGCDETFLKTLLELNPQKIVYISCN 412

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           P +  RD  +L+  + + ++   D FP+T H+E
Sbjct: 413 PSTQQRDAQLLANQYKLTQITPVDMFPHTTHVE 445


>gi|322374343|ref|ZP_08048857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
 gi|321279843|gb|EFX56882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
          Length = 455

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N A N++ N   V  +++    A
Sbjct: 311 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAE---NA 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           MR     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 368 MR-----NWLKE----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 418

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 419 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 454


>gi|301163521|emb|CBW23072.1| putative RNA methyltransferase [Bacteroides fragilis 638R]
          Length = 472

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 20/183 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+    + L  V     G+ GD L  +LY G G  +  ++R   +V+ +E    +
Sbjct: 301 SFYQTNSE-QAYNLYKVARDFAGLTGDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEA 359

Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPR 301
           +E A+ N   N + N        K+  TQ               I+ Y R   I  DPPR
Sbjct: 360 IEDAKVNAEINGIENTLFFAGDMKDILTQDF-------------INQYGRPDVIITDPPR 406

Query: 302 SGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           +G+    V ++  A P  I+Y+SCNP +  RDL +L   + ++ +   D FP+T H+E  
Sbjct: 407 AGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKYRVKAVQPVDMFPHTHHVENV 466

Query: 360 VLL 362
           VLL
Sbjct: 467 VLL 469


>gi|218283642|ref|ZP_03489604.1| hypothetical protein EUBIFOR_02197 [Eubacterium biforme DSM 3989]
 gi|218215702|gb|EEC89240.1| hypothetical protein EUBIFOR_02197 [Eubacterium biforme DSM 3989]
          Length = 431

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 17/154 (11%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +++Y G G   + +++H   V+ VEI K +V+ A  N   NH+++   V   + +F    
Sbjct: 290 IDMYAGTGTIGMAVSQHAKSVIGVEIVKEAVDNANDNTKMNHLDHCHYVCQDATDFAHDH 349

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD 331
           + ++       ID+       IF+DPPR G+ ++     +   P  I+Y+SCNP +L RD
Sbjct: 350 KEDK-------IDV-------IFIDPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRD 395

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L I     +  E +   D F  T  +EC   L +
Sbjct: 396 LKIFKEYGYQCEYVQPVDMFCQTIGLECVAKLTK 429


>gi|331700891|ref|YP_004397850.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128234|gb|AEB72787.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
           B-30929]
          Length = 461

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 154/392 (39%), Gaps = 62/392 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDD----- 57
           Y +QL  K D +RQ +  +Q    + F+        +P HYR +A F I HD +      
Sbjct: 96  YPKQLEFKRDVVRQSLEKYQPTGYRRFKLLPTIGMDDPTHYRNKATFQIRHDENGNTIAG 155

Query: 58  LY----HIMFDQQTK--------ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF 105
           LY    H + D +T         + MR    M   L I A   E  A I    ++RA + 
Sbjct: 156 LYKARSHDVVDLKTSALQYPLTMKVMRAIVTMIDELGIPAYDEEKNAGIIKTVVVRAAI- 214

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
                   +DQ  VT I          +   R++  L      +Q +     + I     
Sbjct: 215 -------ATDQVQVTFITQSKKLLKKHQLLERIKAELPEVVSVMQNVNPGRTSLI----- 262

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           + DE + +AGR  I   +          +F Q N  +   + +    A   ++G+  L++
Sbjct: 263 WGDEMIHLAGRETITEVLNGLKFDLSARAFLQANPAMTSILYDEAFKALD-LKGNEKLVD 321

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            Y G G   L +A+    V  ++    +V+ A  N   N + N       ++E       
Sbjct: 322 AYSGVGTIGLSVAKQVREVRGMDTIAEAVQDANANSVRNGIFNCLYEVGEAEEL------ 375

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLS 333
                 L +     +    + VDPPR+GL D+ +  +    P   +YISCNP +L +DL 
Sbjct: 376 ------LPEWVDDGWTPTALIVDPPRTGLADSLIDTILDIVPKKFVYISCNPSTLAQDLV 429

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            L+  + +E +   D  P T   EC V   +K
Sbjct: 430 KLTEKYNVEYIQSVDLMPQTSRCECVVKFKKK 461


>gi|313114891|ref|ZP_07800389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622768|gb|EFQ06225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 461

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L  A H  +V+ VE+ + +V  A  N  A H N VK  R  + + TQ 
Sbjct: 226 VLDAYCGIGTIGLTAADHAKQVVGVEVNREAVHDAIGN--AKH-NGVKNARFFAADATQW 282

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           +          D+         IF+DPPR G     +  V   A   ++Y+SCNP +L R
Sbjct: 283 IGEAAAAGERADV---------IFMDPPREGSTPQFIDSVARMAPKRVVYVSCNPATLAR 333

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357
           DL +L+   + +E     D FP++ H+E
Sbjct: 334 DLELLTRKGYKVESSTPVDMFPHSEHIE 361


>gi|154685279|ref|YP_001420440.1| YfjO [Bacillus amyloliquefaciens FZB42]
 gi|154351130|gb|ABS73209.1| YfjO [Bacillus amyloliquefaciens FZB42]
          Length = 466

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   + ++     +  +++ K S++ A+ N   + + N   V  +++ +   
Sbjct: 321 VVDAYCGVGTIGMWVSSGAKEIRGMDVIKESIDDAKKNAKKHGIKNAAYVTGTAEHWLPK 380

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             +R   + VDPPR+G D   +  ++       +Y+SCNP +L +
Sbjct: 381 WTKE------------GFRPDVVIVDPPRTGCDRTFLDTIKKVKPKRFVYVSCNPSTLAK 428

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + +E +   D FP T H+E    LV K S
Sbjct: 429 DLQTLSKDYRVEYIQPVDMFPQTAHVEAVAKLVLKSS 465


>gi|70726057|ref|YP_252971.1| hypothetical protein SH1056 [Staphylococcus haemolyticus JCSC1435]
 gi|68446781|dbj|BAE04365.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 454

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A+ N   N   N   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPVAKHVYGVEVVPSAIKDAQQNATLNGFENTTFVCGKAEEVIIK 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            +++              +   + VDPPR G D+  +  +++  P  I+YISCNP +  R
Sbjct: 371 WKQQ------------GIKPDVVMVDPPRKGCDETFLQTLLKLNPKRIVYISCNPSTQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D  IL + + ++ +   D FP T H+E   L  RK
Sbjct: 419 DAQILDSQYELQEITPVDMFPQTTHVETVALFERK 453


>gi|322828893|gb|EFZ32513.1| hypothetical protein TCSYLVIO_1138 [Trypanosoma cruzi]
          Length = 568

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 27/196 (13%)

Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N +G+ + + E    A  G +  LL+L CG G   L LA+H  RV+ +E+ + +
Sbjct: 375 TSFFQVNTSGMELLLCETAKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESA 434

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV---DPP 300
           V  AR N   N + N        +     +      N L + D      KT  V   DPP
Sbjct: 435 VSDARQNAKRNDIANATFCSGRVEHLLPDI-----INSLPEED------KTDIVAILDPP 483

Query: 301 RSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT-------IERLALF--D 348
           R+G+    +  ++  P I   +YISC   +L RD   L+ + T        E +A F  D
Sbjct: 484 RAGVTPTVLKWIRGTPTIRRVVYISCEQKALERDCPSLTKSTTKAYRGLPFELVASFAVD 543

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   +L R
Sbjct: 544 LFPHTPHVEMVAVLAR 559


>gi|241948165|ref|XP_002416805.1| tRNA methyltransferase, putative; trna
           (uracil-5-)-methyltransferase, putative;
           trna(m5u54)methyltransferase, putative [Candida
           dubliniensis CD36]
 gi|223640143|emb|CAX44390.1| tRNA methyltransferase, putative [Candida dubliniensis CD36]
          Length = 552

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 21/161 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  + +  +V+ VEI+  S+  A+ N   N++ N   +   ++E    
Sbjct: 402 LVDAYCGSGLFSITCSSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEI--- 458

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                       ID  + +  ++ +DPPR G DD  +  +  Y    I+YISCN  S  R
Sbjct: 459 ---------FASIDTPNNQ-TSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHSQAR 508

Query: 331 DL------SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+      +     + +E +  FD FP T H+E   +L  K
Sbjct: 509 DIEWFINNTANGNQYYVESIKGFDFFPQTHHVETVAVLSLK 549


>gi|70954218|ref|XP_746166.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526695|emb|CAH88281.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 733

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 19/163 (11%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLA---RHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            K ++  + +L CG G  S+ +A   +H D  ++ ++I + S+ +A  N   N + N K 
Sbjct: 572 NKNMKNYIFDLCCGTGTISICIANALKHEDTHIVGIDICEESIISANKNAQINKIKNYKF 631

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHI 318
           ++   +E             +K+I   +     + VDPPRSGL  +   T+  +     I
Sbjct: 632 IKGRVEELFAG--------EIKNISQQNCNI-IVIVDPPRSGLAQSVLNTLSSIHPINQI 682

Query: 319 LYISCNPDSLCRDLS---ILSTTHTIERLALFDQFPYTRHMEC 358
           +Y+SCNP +L  +++    ++    I+ L   D FP+T H+EC
Sbjct: 683 IYVSCNPSTLINNVTNLLFMNECFKIKNLVFVDMFPHTYHLEC 725


>gi|86132735|ref|ZP_01051327.1| RNA methyltransferase, TrmA family [Dokdonia donghaensis MED134]
 gi|85816689|gb|EAQ37875.1| RNA methyltransferase, TrmA family [Dokdonia donghaensis MED134]
          Length = 471

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 98/217 (45%), Gaps = 28/217 (12%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +  AGR  I+ ++E         SF Q N+    + L  +     G+ G+ L
Sbjct: 268 DTIYDQEVICYAGRDHIFEEMEGLKFKINAKSFYQTNSE-QAYELYKITRDFAGLTGNEL 326

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             +LY G G  +  +A+   +V+ VE    ++ AA+ N   N + N +        F   
Sbjct: 327 VYDLYTGTGTIAQFVAKKAKKVIGVEAVPDAITAAKENAKLNGIENAEF-------FVGD 379

Query: 273 MRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSL 328
           M++    EF     I  H      I  DPPR G+  D    ++   P  I+Y+SCN  + 
Sbjct: 380 MKKVFNSEF-----IATHG-EPDIIITDPPRDGMHKDVVDQILNISPQKIVYVSCNSATQ 433

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL++L   + + ++   D FP T H+E  VLL ++
Sbjct: 434 ARDLALLDDVYKVTKVQPVDMFPQTHHVENVVLLEKR 470


>gi|327183079|gb|AEA31526.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1118]
          Length = 448

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 19/158 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ + +++ A+ N   N ++N K     ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDIDNAKYYLGKAEEIMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSL 328
             ++              +   +FVDPPR GL     DAT         ++YISCNP ++
Sbjct: 365 WAKQ------------GLKTDVVFVDPPRKGLTPEFIDATAKT--GPEKVVYISCNPATM 410

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL +     +  +R+   D FP T H+E   +L +K
Sbjct: 411 VRDLQLFQEQGYEFDRIDPVDMFPQTPHVEAVTVLTKK 448


>gi|327393298|dbj|BAK10720.1| 23S rRNA uracil-5- methyltransferase RumB [Pantoea ananatis
           AJ13355]
          Length = 380

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A     +  +EI+  +++ A+ +     +NNV    + S  F  
Sbjct: 235 SMWDLFCGVGGFGLHCASPTLALTGIEISPEAIQCAQRSAQMLGLNNVSFAALDSTAFA- 293

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                 E +R+  +         + V+PPR G+ +A    + A    ++LY SCNP ++ 
Sbjct: 294 -----TERDRVPQL---------VLVNPPRRGIGEALCDYLSAMAPDYVLYSSCNPQTMA 339

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           +D++ L   + + ++ LFD FP+T H E   LL R+ SG
Sbjct: 340 QDIARLKD-YEVTQVQLFDMFPHTAHFEVLTLLTRQRSG 377


>gi|295702483|ref|YP_003595558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
           DSM 319]
 gi|294800142|gb|ADF37208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
           DSM 319]
          Length = 457

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N ++N         EF   
Sbjct: 314 VIDAYCGIGTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNA--------EFEVG 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
                  N  K       +   I VDPPR G D+A +  ++   P  ++Y+SC P +L R
Sbjct: 366 EAEVVIPNWYK----QGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLAR 421

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           DL+IL      T+E +   D FP+T H+E   +L  K
Sbjct: 422 DLAILEKGGYETVE-VQPVDMFPHTTHVENVAVLTLK 457


>gi|315611699|ref|ZP_07886621.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315316114|gb|EFU64144.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 453

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAQKMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + ++ +   D FP+T   E  V LV+K
Sbjct: 416 DLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 450


>gi|291616872|ref|YP_003519614.1| RumB [Pantoea ananatis LMG 20103]
 gi|291151902|gb|ADD76486.1| RumB [Pantoea ananatis LMG 20103]
          Length = 380

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 18/159 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A     +  +EI+  +++ A+ +     +NNV    + S  F  
Sbjct: 235 SMWDLFCGVGGFGLHCASPTLALTGIEISPEAIQCAQRSAQMLGLNNVSFAALDSTAFA- 293

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                 E +R+  +         + V+PPR G+ +A    + A    ++LY SCNP ++ 
Sbjct: 294 -----TERDRVPQL---------VLVNPPRRGIGEALCDYLSAMAPDYVLYSSCNPQTMA 339

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           +D++ L   + + ++ LFD FP+T H E   LL R+ SG
Sbjct: 340 QDIARLKD-YEVTQVQLFDMFPHTAHFEVLTLLTRQRSG 377


>gi|241889868|ref|ZP_04777166.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
 gi|241863490|gb|EER67874.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
          Length = 446

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL  A+   +V  +EI + +V  A  N   N++ NV+ +   S++  + 
Sbjct: 302 IIDAYCGIGTISLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGKSEDVIKK 361

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           +  +              +   + VDPPR G +++ +  + A     I+Y+SCNP +L R
Sbjct: 362 LISQ------------DVKLDAVIVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLAR 409

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ I+    + +  +   D FP T H+E  VLL +
Sbjct: 410 DMEIMRGLGYKLGSVQPVDMFPGTYHVETVVLLSK 444


>gi|317050469|ref|YP_004111585.1| (Uracil-5)-methyltransferase [Desulfurispirillum indicum S5]
 gi|316945553|gb|ADU65029.1| (Uracil-5)-methyltransferase [Desulfurispirillum indicum S5]
          Length = 385

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 25/183 (13%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            F Q N  +   M   V +A  G    + E YCG+G FS  +A     + A EI+ P+V+
Sbjct: 224 GFAQANPFVTALMASHVASACAGQH--VFEGYCGSGTFSRAIASGAASLEAWEISAPAVK 281

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N     + N +          QA   E+         I S R + + VDPPR+GL 
Sbjct: 282 LARRNC--RDLANTRF---------QAGDAEKS-------AIGSDR-QIVVVDPPRTGLG 322

Query: 306 DATVGMVQAY--PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVL 361
                 + A     ++YISCNP ++ RDL  L  ++  T+  L  FD +P+T H+E   +
Sbjct: 323 RGMTSRILASHAKKLIYISCNPATMARDLRFLQENSAFTLTHLEGFDMYPHTTHLEMLAM 382

Query: 362 LVR 364
           L R
Sbjct: 383 LER 385


>gi|315037788|ref|YP_004031356.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325956263|ref|YP_004286873.1| RNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|312275921|gb|ADQ58561.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325332828|gb|ADZ06736.1| RNA methyltransferase [Lactobacillus acidophilus 30SC]
          Length = 448

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 19/158 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ + +++ A+ N   N ++N K     ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDIDNAKYYLGKAEEIMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSL 328
             ++              +   +FVDPPR GL     DAT         ++YISCNP ++
Sbjct: 365 WAKQ------------GLKTDVVFVDPPRKGLTPEFIDATAKT--GPEKVVYISCNPATM 410

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL +     +  +R+   D FP T H+E   +L +K
Sbjct: 411 VRDLQLFQEQGYEFDRIDPVDMFPQTPHVEAVTVLTKK 448


>gi|329116332|ref|ZP_08245049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parauberis NCFD 2020]
 gi|326906737|gb|EGE53651.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parauberis NCFD 2020]
          Length = 452

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +  +   + D+ ++ Y G G   L  A+   +V  VE+ + +V
Sbjct: 280 SFYQVNTEMAEKLYQTAIDFSNLTKDDIVIDAYSGIGTIGLSFAKSVKKVYGVEVIEQAV 339

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             AR N   N + NV+ V   ++   +   +E          IH      I VDPPR GL
Sbjct: 340 LDARKNAELNGIKNVQFVTDIAEAAMEKWSKE---------GIHP---NVILVDPPRKGL 387

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
            ++ +   V+  P  I Y+SCNP ++ RD+ +     + ++++   D FP T H+EC  L
Sbjct: 388 TESFIRASVEMNPEKITYVSCNPATMARDIKLYQELGYDLKKVQPVDLFPQTHHVECVSL 447

Query: 362 LVRK 365
           L ++
Sbjct: 448 LEKR 451


>gi|238762100|ref|ZP_04623073.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia kristensenii
           ATCC 33638]
 gi|238699828|gb|EEP92572.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia kristensenii
           ATCC 33638]
          Length = 375

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 18/156 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    ++  +EI+  ++  AR + +   + NV    + S  F  
Sbjct: 236 SMWDLFCGVGGFGLHCADPETQLTGIEISAEAIACARQSASQLGLKNVNFAALDSTRFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A   E +  +L            + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAELCEYLSQMAPEFILYSSCNAETMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +D+++L+  H IER+ LFD FP+T H E   LL+++
Sbjct: 341 KDINLLADYH-IERVQLFDMFPHTAHYEVLSLLIKR 375


>gi|218289362|ref|ZP_03493596.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240468|gb|EED07649.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 449

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 20/214 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL- 213
            N  ++   R +++E +      L  R    SF Q    +   M E V+ A +  + D+ 
Sbjct: 251 GNAVEVFKGRTHLEEIMC----GLRVRWSPRSFLQVQTDMAERMYEHVVRAAEVRETDVV 306

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ YCG G  +L+LA    R + VE  + ++  AR N   N + N + V           
Sbjct: 307 IDAYCGIGVITLLLAERAARAVGVEEVEDAITDARANAKLNRLRNTEFV---------VD 357

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331
           R ER   R  +      R   +  DPPR G+D A +          ++Y+SCNP +L RD
Sbjct: 358 RVERWLPRFVE---EGNRADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERD 414

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L +L T    +  +  FD FP T H+EC V + R
Sbjct: 415 LRLLMTRGFYVADIQPFDMFPQTSHVECVVAMRR 448


>gi|323351306|ref|ZP_08086962.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322122530|gb|EFX94241.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 469

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+H   V  VE+   +VE ++ N A N + N   V   ++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   +   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMAR 428

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LLVR
Sbjct: 429 DIKLYRELGYELKKVQPVDLFPQTHHVETVSLLVR 463


>gi|329964803|ref|ZP_08301826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT
           12057]
 gi|328524654|gb|EGF51717.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT
           12057]
          Length = 511

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 24/203 (11%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221
           T  G+  I+ ++E         SF Q N+    + L  +     G+ G+ L  +LY G G
Sbjct: 315 TFKGKDHIFEEMEGLRFKIGPKSFYQTNSE-QAYNLYKIARNFAGLTGNELVYDLYTGTG 373

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  +++   +V+ +E    ++E A+ N   N ++N        K+    M  +   N+
Sbjct: 374 TIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIHNTLFFAGDMKD----MLTQDFINQ 429

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTH 339
               D+       I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L T +
Sbjct: 430 YGRPDV-------IITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDTKY 482

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
            ++ +   D FP+T H+E  VLL
Sbjct: 483 KVKAVQPVDMFPHTHHVENVVLL 505


>gi|320546279|ref|ZP_08040599.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
           9812]
 gi|320449056|gb|EFW89779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
           9812]
          Length = 450

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++ YCG G      A     V  ++I   ++E A+ N      +N          + +
Sbjct: 307 NIIDAYCGVGTIGFAFAGRVKSVRGMDIIPEAIEDAKKNAQRMGFDNT---------YYE 357

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
           A R E    +        YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L 
Sbjct: 358 AGRAEDIIPKWYK---EGYRADALVVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLA 414

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL  LS  + +  +   D FP+T   E  V LVRK
Sbjct: 415 RDLVKLSKVYDVNYIQSVDMFPHTARTEAVVKLVRK 450


>gi|16803791|ref|NP_465276.1| hypothetical protein lmo1751 [Listeria monocytogenes EGD-e]
 gi|47095677|ref|ZP_00233284.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
           1/2a F6854]
 gi|224503324|ref|ZP_03671631.1| hypothetical protein LmonFR_12550 [Listeria monocytogenes FSL
           R2-561]
 gi|254900744|ref|ZP_05260668.1| hypothetical protein LmonJ_13049 [Listeria monocytogenes J0161]
 gi|254913771|ref|ZP_05263783.1| RNA methyltransferase [Listeria monocytogenes J2818]
 gi|254938158|ref|ZP_05269855.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|255028262|ref|ZP_05300213.1| hypothetical protein LmonL_01654 [Listeria monocytogenes LO28]
 gi|50401632|sp|Q8Y6D6|Y1751_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1751
 gi|16411205|emb|CAC99829.1| lmo1751 [Listeria monocytogenes EGD-e]
 gi|47015962|gb|EAL06888.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
           1/2a F6854]
 gi|258610771|gb|EEW23379.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|293591787|gb|EFG00122.1| RNA methyltransferase [Listeria monocytogenes J2818]
          Length = 453

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   +
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPS 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|330752034|emb|CBL80546.1| RNA methyltransferase [uncultured Flavobacteria bacterium]
          Length = 484

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 116/248 (46%), Gaps = 23/248 (9%)

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQI--QLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           + +LL D ++E   R    LH+   +   + +  +  +K+    D + E L      +  
Sbjct: 249 FSKLLQDIFKE---RFAGLLHSINDETGDRTLASSGSSKLISGEDKIIEELLGLNFEISM 305

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD--RVLAV 237
           +    +  +    + + ++E+ L   + I   + ++L+CG G    +LA      +++ V
Sbjct: 306 KSFFQTNPKSAEKLYLKVIEYALEKKEAIDNTIVMDLFCGTGTIGQILASRSTNAKIIGV 365

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +I   ++  A+ N     +NN++ ++  + +  + +    E+           + +TI +
Sbjct: 366 DIVASAINDAKKNA---KINNIQGLKFFANDVGKFLNNHPEYKN---------KIRTIIL 413

Query: 298 DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTR 354
           DP R+G+   T+  +       I+Y+SCNP +  RD  +L    + I++++L DQFP+T 
Sbjct: 414 DPARAGIAPKTLLKIININADRIVYVSCNPATQARDTEVLILNNYKIKKISLVDQFPHTA 473

Query: 355 HMECGVLL 362
           H+E  VL 
Sbjct: 474 HIETVVLF 481


>gi|282853991|ref|ZP_06263328.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes J139]
 gi|282583444|gb|EFB88824.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes J139]
 gi|314981068|gb|EFT25162.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL110PA3]
 gi|315091893|gb|EFT63869.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL110PA4]
 gi|315103395|gb|EFT75371.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL050PA2]
          Length = 393

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+        ++     F Q + G    + + V+   K 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTAHVGQRRWKVGAGGFWQMHPGAAEALADAVIGGLKP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRRGAGKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|255019188|ref|ZP_05291314.1| hypothetical protein LmonF_18146 [Listeria monocytogenes FSL
           F2-515]
          Length = 176

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   +
Sbjct: 33  VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPS 92

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 93  WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 140

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 141 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 173


>gi|315656641|ref|ZP_07909528.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492596|gb|EFU82200.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 504

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 16/205 (7%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
           V E + V+  T  YR    SF Q +      +   +  A   I+G +  ELY G+G FSL
Sbjct: 216 VRETVHVSDLTFTYRIFSGSFWQTDRRAPAILAAALRDALGQIEGFEAWELYSGSGLFSL 275

Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            LA+      R+  VE   P+ ++A YN+A    + V++ R    + +  + R      +
Sbjct: 276 FLAQGLGAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRR---GDVSPQLLRSLPMGEM 332

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYI-SCNPDSLCRDLSIL-STTH 339
                   +   +  DPPRSGL  A    + A +P ++ + SC+P S  RDL  +    +
Sbjct: 333 VS------QGTLVVADPPRSGLGKAVARAICAQHPDLVALFSCDPVSCARDLETMRQLGY 386

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            ++   +FD FPYT H+E  VLL +
Sbjct: 387 RVKTWRVFDLFPYTSHVETIVLLSK 411


>gi|227875491|ref|ZP_03993631.1| tRNA (uracil-5-)-methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|227843827|gb|EEJ53996.1| tRNA (uracil-5-)-methyltransferase [Mobiluncus mulieris ATCC 35243]
          Length = 416

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 14/192 (7%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVL 235
           YR   +SF Q +      ++E +LA    I G ++LELY G+G FS+ LA       R+ 
Sbjct: 232 YRIFASSFWQTDYRAPAVLVEALLAGVGDISGFEVLELYAGSGLFSVFLAEAIGDSGRLT 291

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE  + +V++A YN+      + +    S  E      R   F R  D      R   +
Sbjct: 292 TVEGDRVAVKSAGYNLQHAGFEDTR----SRVERAAVSAR---FLRGLDFGQRFMRGTLV 344

Query: 296 FVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352
             DPPRSGL     G +       +  ISC+P S  RDL  L    + ++   +FD FPY
Sbjct: 345 VADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGYRLQSFRVFDLFPY 404

Query: 353 TRHMECGVLLVR 364
           T+H+E   +L R
Sbjct: 405 TQHVEVLSVLGR 416


>gi|317154458|ref|YP_004122506.1| TrmA family RNA methyltransferase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944709|gb|ADU63760.1| RNA methyltransferase, TrmA family [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 465

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 21/228 (9%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           +H+ + +   +    K    L   +V+ERL    R + YR   N+F Q N G    +   
Sbjct: 248 VHSTRVKRTTVAFGEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGT 307

Query: 202 V-----LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           V     L+ T      LL+LYCG G   + LA    RV+  E ++ +V  AR +   N +
Sbjct: 308 VAEFCALSDTH----VLLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGL 363

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315
            N   V  S ++          F    D          + VDPPRSG+ + T   + A  
Sbjct: 364 TNCSFVSGSLEQGIPG------FAGSGD----QAVPDVVVVDPPRSGMHEKTAEALLALG 413

Query: 316 -PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            P I+ +SC+P +L RD+  L+  + + R+   D FP+T H+E   LL
Sbjct: 414 APRIVAVSCDPATLARDVKRLADRYHVTRVRAVDMFPHTHHIETVALL 461


>gi|224499529|ref|ZP_03667878.1| hypothetical protein LmonF1_07452 [Listeria monocytogenes Finland
           1988]
          Length = 453

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   +
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPS 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ IL+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|327470743|gb|EGF16199.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK330]
          Length = 469

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+H   V  VE+   +VE +R N   N + N   V   ++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQD 380

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 381 WLKE------------GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LLVR
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 463


>gi|313792112|gb|EFS40213.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL110PA1]
 gi|314976067|gb|EFT20162.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL045PA1]
 gi|315098565|gb|EFT70541.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL059PA2]
          Length = 393

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+  R  +         F Q + G    + + V+ + + 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|302879059|ref|YP_003847623.1| RNA methyltransferase, TrmA family [Gallionella capsiferriformans
           ES-2]
 gi|302581848|gb|ADL55859.1| RNA methyltransferase, TrmA family [Gallionella capsiferriformans
           ES-2]
          Length = 435

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 20/286 (6%)

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA 144
           A +IE +AT+     +R KL QI+    +    +V  I   L      E A+R     H 
Sbjct: 165 ASLIEPLATLLAGLSIRDKLPQIEVAVGEHVYVLVLRIMAPL--SCEDEAALRAFADQHV 222

Query: 145 RKYQIQLIGRANKTKI-CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
            ++ +Q  G         LD   +   L   G  + +   E  FTQ N+ +N  M+   +
Sbjct: 223 VQFWLQTKGPETVVPFYPLDAPELTYSLPEFGVVMPFAPGE--FTQVNSQLNRVMISRAM 280

Query: 204 AATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                 +G+ +++ +CG GNF+L +AR   +V  +E +   V+ A  N A+NH++     
Sbjct: 281 RLLNPQKGERIVDFFCGLGNFTLPIARSGAQVTGIEGSDALVKRAAQNAASNHLS----- 335

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILY 320
              +  F+     E +   L  +     RF    +DPPR G  +    +    A   I+Y
Sbjct: 336 --VNTAFSARNLFEMDEAALAALG----RFDKWLIDPPRDGAMELVKSITPEIAPDLIVY 389

Query: 321 ISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +SCNP +L RD + ++   + ++   + + FP T H+E   + VR 
Sbjct: 390 VSCNPATLARDAAELVLRGYVLKSAGVMNMFPQTSHVESIAVFVRS 435


>gi|157369893|ref|YP_001477882.1| 23S rRNA methyluridine methyltransferase [Serratia proteamaculans
           568]
 gi|167012643|sp|A8GCB4|RUMB_SERP5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|157321657|gb|ABV40754.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Serratia
           proteamaculans 568]
          Length = 375

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A        + +L+CG G F L  A    R+  +EI+
Sbjct: 208 QSFFQTNPQVAAELYATARDWVRALAID---SMWDLFCGVGGFGLHCALPETRLTGIEIS 264

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR +     + +V    + S  F  A   E    +L            + V+PP
Sbjct: 265 AEAIACARQSAKTLGLQHVDFQALDSTRFATA---EGSVPQL------------VLVNPP 309

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+  A    +   A  +ILY SCN +S+ +D+ +L   + IER+ LFD FP+T H E 
Sbjct: 310 RRGIGKALCDYLNQMAPGYILYSSCNAESMAKDIEMLPD-YRIERVQLFDMFPHTAHYEV 368

Query: 359 GVLLVRK 365
             LLVR 
Sbjct: 369 LTLLVRN 375


>gi|116074874|ref|ZP_01472135.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. RS9916]
 gi|116068096|gb|EAU73849.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. RS9916]
          Length = 458

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 26/176 (14%)

Query: 197 HMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           H+ +W+L  A T  +    ++ YCG G  +L LA    +VL +E+ K SV+  R N A N
Sbjct: 302 HLSQWLLDRAGTTTV----IDAYCGIGTIALPLAAQGHQVLGLELHKASVDQGRLNAARN 357

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            +  V+      K          E                + VDPPR GLD   V  +  
Sbjct: 358 RLEQVRFKAGDVKALLADALPSHE---------------ALVVDPPRKGLDADVVDQILE 402

Query: 315 YPH--ILYISCNPDSLCRDLSILST---THTIERLALFDQFPYTRHMECGVLLVRK 365
            P   + Y+SC+P +L RDL  L      + +E +   D FP T H+E  VL+ R 
Sbjct: 403 CPPRWMAYLSCDPATLSRDLKRLCVPQGPYEVEGIHPVDFFPQTTHLESLVLMKRS 458


>gi|319902370|ref|YP_004162098.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P
           36-108]
 gi|319417401|gb|ADV44512.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P
           36-108]
          Length = 475

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 24/203 (11%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221
           T  G+  I+ ++E         SF Q N+    + L  +     G+ GD L  +LY G G
Sbjct: 279 TFKGKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKIARNFAGLTGDELVYDLYTGTG 337

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  ++    RV+ +E    ++E A+ N   N + N        K+    M  +   N+
Sbjct: 338 TIANFVSGKARRVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKD----MLTQDFINQ 393

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTH 339
               D+       I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L   +
Sbjct: 394 YGRPDV-------IITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDVKY 446

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
            ++ +   D FP+T H+E  VLL
Sbjct: 447 KVKAVQPVDMFPHTHHVENVVLL 469


>gi|312144062|ref|YP_003995508.1| (Uracil-5)-methyltransferase [Halanaerobium sp. 'sapolanicus']
 gi|311904713|gb|ADQ15154.1| (Uracil-5)-methyltransferase [Halanaerobium sp. 'sapolanicus']
          Length = 389

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG+G  S  +A +  ++  ++I + ++  AR N   N+V+N   +          
Sbjct: 249 IYDLYCGSGTISQSIADNAKKIYGIDIDEEAINRARENADLNNVSNTYYIAGDV------ 302

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                    L+ I++ + +   I +DPPR G++   +  +       ILYISCNP +L R
Sbjct: 303 ---------LEKIEVLAEKPDLIIIDPPRPGINPKALNKIAQTNSKEILYISCNPKTLAR 353

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL       + +++    D FP+T+H+E   LL +
Sbjct: 354 DLKEFKLHNYKLQKFKAVDMFPHTKHLEVISLLKK 388


>gi|292492481|ref|YP_003527920.1| RNA methyltransferase, TrmA family [Nitrosococcus halophilus Nc4]
 gi|291581076|gb|ADE15533.1| RNA methyltransferase, TrmA family [Nitrosococcus halophilus Nc4]
          Length = 446

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 98/229 (42%), Gaps = 35/229 (15%)

Query: 148 QIQLIGRANKTKICLDRDYVDER--LTVAGRTLIYRQIEN--------SFTQPNAGINVH 197
           Q+   GRA+  +I L    ++    L      L Y Q EN         F Q N  +N  
Sbjct: 223 QLADFGRAHGLQIYLQGGGIETLCLLWPESAELSYSQFENLEMVFLPTDFMQVNREVNSK 282

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           M++ VLA  +    D +L+L+CG GNF+L LA     V+ VE +   V  A  N   N +
Sbjct: 283 MVQQVLALLELKSHDRVLDLFCGVGNFTLPLASSGAEVVGVEGSAGLVARATANAKHNQL 342

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDI--HSYR---FKTIFVDPPRSGLDDATVGM 311
            NV                  E   L ++D   H++    F    +DPPRSG   A   M
Sbjct: 343 GNVNF----------------EVADLNELDWVRHAWAQNGFSKAVLDPPRSGALTAVQQM 386

Query: 312 VQ-AYPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357
                  I+Y+SCNP +L RD   L     + +    + D FP+T H+E
Sbjct: 387 SALQVQRIVYVSCNPATLARDAGELVNRQGYHLRYAGVMDMFPHTPHVE 435


>gi|289677066|ref|ZP_06497956.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 148

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271
           +++L+CG GNF+L LA     V+AVE     VE A  N  +N ++NV+  +   S+  T 
Sbjct: 5   VMDLFCGLGNFALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTH 64

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCR 330
           A             D  +  F  + +DPPR G  +    + +     +LY+SCNP +L R
Sbjct: 65  A-------------DWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLAR 111

Query: 331 D-LSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D + ++   + ++R  + D FP T H+E   L 
Sbjct: 112 DAVELIRQGYRLKRAGILDMFPQTAHVEAMALF 144


>gi|329999871|ref|ZP_08303541.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. MS
           92-3]
 gi|328538190|gb|EGF64342.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. MS
           92-3]
          Length = 375

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A    +Q  + +L+CG G F L  A    R+  +EIA
Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPTMRLTGIEIA 263

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR + A   ++N+    + S +F      E +  +L            + V+PP
Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEADAPQL------------VLVNPP 308

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+       +   A P+I+Y SCN  ++  D++ LS  + +ER+ LFD FP+T H E 
Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLS-GYRVERVQLFDMFPHTAHYEV 367

Query: 359 GVLLVRK 365
             LLVR+
Sbjct: 368 LTLLVRE 374


>gi|313801935|gb|EFS43169.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL110PA2]
          Length = 393

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+  R  +         F Q + G    + + V+ + + 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|34497387|ref|NP_901602.1| 23S rRNA (uracil-5-)-methyltransferase [Chromobacterium violaceum
           ATCC 12472]
 gi|50401501|sp|Q7NWP9|RUMA_CHRVO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|34103243|gb|AAQ59606.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 514

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 24/182 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ N  IN  M+   L       G+ + +++CG GNF+L +AR    V  +E ++P 
Sbjct: 268 TEFTQVNPQINAVMVARALKFLDPQPGERIADMFCGIGNFTLPIARSGAVVHGMEGSQPL 327

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY----RFKTIFVDP 299
           V  A  N   N + +               +   E   L D+   S+    +F  + VDP
Sbjct: 328 VRRAVENATHNGLQD---------------KVSYEMANLFDVTEESFAALGKFDKMLVDP 372

Query: 300 PRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRH 355
           PR G       + +  A   I+Y+SCNP +L RD  +L  T  +T++   + + FP+T H
Sbjct: 373 PRDGAVQLLKAITEETAPQRIVYVSCNPSTLARDAGVLVHTKGYTLKAAGIINMFPHTAH 432

Query: 356 ME 357
           +E
Sbjct: 433 VE 434


>gi|322377743|ref|ZP_08052233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M334]
 gi|321281508|gb|EFX58518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M334]
          Length = 456

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      S++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGSAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + I  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDIHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|134302402|ref|YP_001122372.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134050179|gb|ABO47250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. tularensis WY96-3418]
          Length = 449

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGELTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  T   + ++  + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441


>gi|314967862|gb|EFT11961.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL037PA1]
          Length = 393

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+  R  +         F Q + G    + + V+ + + 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|323485341|ref|ZP_08090690.1| hypothetical protein HMPREF9474_02441 [Clostridium symbiosum
           WAL-14163]
 gi|323401377|gb|EGA93726.1| hypothetical protein HMPREF9474_02441 [Clostridium symbiosum
           WAL-14163]
          Length = 490

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 21/215 (9%)

Query: 157 KTKICLDRDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
           KT + L R+ V+      +T     + YR    SF Q N  +    L        G+ G+
Sbjct: 280 KTNVILGREVVNLYGPGYITDYIGNVKYRISPLSFYQVNP-VQTERLYGTALEYAGLTGE 338

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +LYCG G  SL L++   +V  VEI   ++E AR N   N + NV+     ++E  
Sbjct: 339 ETVWDLYCGIGTISLFLSQKAKKVYGVEIVPQAIEDARENARLNGIENVEFFVGKAEEVL 398

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
                E +     D+         I VDPPR G D   +  +       ++Y+SC+  +L
Sbjct: 399 PKQYEEDKV--YADV---------IVVDPPRKGCDPVCLDTIVMMGPKKVVYVSCDSATL 447

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
            RD+  L    + +ER++  D FP + H+E  +++
Sbjct: 448 ARDVKYLEERGYWVERVSCVDMFPMSGHVESVIMM 482


>gi|170727692|ref|YP_001761718.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|226725394|sp|B1KPU0|RUMA_SHEWM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|169813039|gb|ACA87623.1| RNA methyltransferase, TrmA family [Shewanella woodyi ATCC 51908]
          Length = 443

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 26/227 (11%)

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML---- 199
           A+++++ LI + N+ ++ + +   +         +       +F Q N  IN  M+    
Sbjct: 232 AQEHKVNLIVQGNEGELLVIKGPKELPFYTLNSDIKLSFTPGNFVQVNGEINRAMVDQAV 291

Query: 200 EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +W+      ++ D  +L+L+CG GNFSL LA+    V+ VE     V  AR N   + ++
Sbjct: 292 QWL-----DVKADERVLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVAQARINAKQSDLS 346

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +V        + +  + +E    ++            + +DP R+G  ++   + +  P 
Sbjct: 347 DVTFFHT---DLSADLSKEPWLGKV----------DKLLLDPARAGAFESLQWLKKMKPK 393

Query: 318 -ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
            I+Y+SC+P SL RD   +L   + +++L L D FP T H+E   L 
Sbjct: 394 SIVYVSCDPSSLARDSEPLLKHGYKLKKLGLVDMFPQTHHIEAMALF 440


>gi|294497118|ref|YP_003560818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
           B1551]
 gi|294347055|gb|ADE67384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
           B1551]
          Length = 457

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 17/149 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  VEI   ++E A+ N   N ++N         EF   
Sbjct: 314 VIDAYCGIGTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNA--------EFEVG 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
                  N  K       +   I VDPPR G D+A +  ++   P  ++Y+SC P +L R
Sbjct: 366 EAEVVIPNWYK----QGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLAR 421

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHME 357
           DL+IL      T+E +   D FP+T H+E
Sbjct: 422 DLAILEKGGYETVE-VQPVDMFPHTTHVE 449


>gi|168205921|ref|ZP_02631926.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
           JGS1987]
 gi|170662572|gb|EDT15255.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
           JGS1987]
          Length = 451

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + 
Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           ++ + +                I +DPPRSG+    +  V  +  P I+Y+SCNP +L  
Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L +  + IE+  L D FP T H+E  V L +K
Sbjct: 416 DLKVLEAKEYEIEKTLLMDMFPNTPHVETVVKLNKK 451


>gi|148377925|ref|YP_001256801.1| putative RNA methyltransferase [Mycoplasma agalactiae PG2]
 gi|148291971|emb|CAL59363.1| Hypothetical RNA methyltransferase [Mycoplasma agalactiae PG2]
          Length = 446

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 18/153 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G  SL LA+   +V  +EI K +V  A+ N   N + N         EF   
Sbjct: 296 VLDAYCGIGTISLFLAQKAKKVYGLEIVKEAVINAKENALDNSIYNT--------EFISG 347

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                  + +K ID  + +  T+ VDPPRSGL    +  ++   P  I YISCNP ++CR
Sbjct: 348 -------DVIKTIDSINEKIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCR 400

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D+  ++   + +  L   D F  T H+E   +L
Sbjct: 401 DIDQLIKAGYELSFLRPCDMFSQTYHIEMVAVL 433


>gi|82595216|ref|XP_725756.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480877|gb|EAA17321.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 732

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLA---RHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            K ++  + +L CG G  S+ +A   +H D  ++ ++I + S+ +A  N   N + N K 
Sbjct: 571 NKNMKNYIFDLCCGTGTISICIANALKHEDMHIVGIDICEESIISANQNAQINKIKNYKF 630

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YP--HI 318
           ++   +E             +K+I   +     + VDPPRSGL  + +  + + +P   I
Sbjct: 631 IKGRVEELFAG--------EIKNISQQNCNI-IVIVDPPRSGLAQSVINTLSSIHPINQI 681

Query: 319 LYISCNPDSLCRDLS---ILSTTHTIERLALFDQFPYTRHMEC 358
           +Y+SCNP +L  +++    ++    I+ L   D FP+T H+EC
Sbjct: 682 IYVSCNPSTLINNVTNLLFMNEYFKIKNLVFVDMFPHTYHLEC 724


>gi|313764426|gb|EFS35790.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL013PA1]
 gi|314915419|gb|EFS79250.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL005PA4]
 gi|314920111|gb|EFS83942.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL050PA3]
 gi|314931633|gb|EFS95464.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL067PA1]
 gi|314958086|gb|EFT02189.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL002PA1]
 gi|315101434|gb|EFT73410.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL046PA1]
 gi|327450754|gb|EGE97408.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL087PA3]
 gi|327453903|gb|EGF00558.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL083PA2]
 gi|328754172|gb|EGF67788.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL087PA1]
 gi|328754577|gb|EGF68193.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL025PA2]
          Length = 393

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+  R  +         F Q + G    + + V+ + + 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|295397194|ref|ZP_06807297.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
           11563]
 gi|294974583|gb|EFG50307.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
           11563]
          Length = 464

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  +L LA+    V  VE+   +V+ A+ N A N++NNV        E  QA
Sbjct: 320 VVDAYCGIGTITLALAKKAKHVYGVEVVGDAVKMAKNNAAKNYINNVHF------ETGQA 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                E+ +                   R GL+D  +   ++A P  I+Y+SCNP ++ R
Sbjct: 374 ETVMGEWVKAGVQPDVVVVDPP------RKGLEDTFIESTIEANPEKIVYVSCNPTTMAR 427

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D++  +   +  E++   D FP T H+EC VL+
Sbjct: 428 DIAKFVEAGYDFEQVQPLDMFPQTWHVECVVLM 460


>gi|168215741|ref|ZP_02641366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens NCTC 8239]
 gi|182382137|gb|EDT79616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens NCTC 8239]
          Length = 451

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + 
Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           ++ + +                I +DPPRSG+    +  V  +  P I+Y+SCNP +L  
Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L +  + IE+  L D FP T H+E  V L +K
Sbjct: 416 DLKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451


>gi|110801335|ref|YP_696793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens ATCC 13124]
 gi|168208816|ref|ZP_02634441.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str.
           ATCC 3626]
 gi|182624048|ref|ZP_02951836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens D str. JGS1721]
 gi|110675982|gb|ABG84969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens ATCC 13124]
 gi|170713002|gb|EDT25184.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str.
           ATCC 3626]
 gi|177910941|gb|EDT73295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens D str. JGS1721]
          Length = 451

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + 
Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           ++ + +                I +DPPRSG+    +  V  +  P I+Y+SCNP +L  
Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L +  + IE+  L D FP T H+E  V L +K
Sbjct: 416 DLKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451


>gi|238893918|ref|YP_002918652.1| 23S rRNA methyluridine methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546234|dbj|BAH62585.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 375

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A    +Q  + +L+CG G F L  A    R+  +EIA
Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPTMRLTGIEIA 263

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR + A   ++N+    + S +F      E +  +L            + V+PP
Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEADAPQL------------VLVNPP 308

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+       +   A P+I+Y SCN  ++  D++ LS  + +ER+ LFD FP+T H E 
Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLS-GYRVERVQLFDMFPHTAHYEV 367

Query: 359 GVLLVRK 365
             LLVR+
Sbjct: 368 LTLLVRE 374


>gi|50842542|ref|YP_055769.1| SAM-dependent methyltransferase related to tRNA [Propionibacterium
           acnes KPA171202]
 gi|289425337|ref|ZP_06427114.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes SK187]
 gi|289427054|ref|ZP_06428770.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes J165]
 gi|295130621|ref|YP_003581284.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes SK137]
 gi|50840144|gb|AAT82811.1| SAM-dependent methyltransferase related to tRNA [Propionibacterium
           acnes KPA171202]
 gi|289154315|gb|EFD03003.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes SK187]
 gi|289159523|gb|EFD07711.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes J165]
 gi|291375509|gb|ADD99363.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes SK137]
 gi|313772192|gb|EFS38158.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL074PA1]
 gi|313807548|gb|EFS46035.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL087PA2]
 gi|313810057|gb|EFS47778.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL083PA1]
 gi|313812914|gb|EFS50628.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL025PA1]
 gi|313815965|gb|EFS53679.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL059PA1]
 gi|313818589|gb|EFS56303.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL046PA2]
 gi|313820357|gb|EFS58071.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL036PA1]
 gi|313822838|gb|EFS60552.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL036PA2]
 gi|313825231|gb|EFS62945.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL063PA1]
 gi|313827519|gb|EFS65233.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL063PA2]
 gi|313833757|gb|EFS71471.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL056PA1]
 gi|313838762|gb|EFS76476.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL086PA1]
 gi|314925245|gb|EFS89076.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL036PA3]
 gi|314959972|gb|EFT04074.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL002PA2]
 gi|314962771|gb|EFT06871.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL082PA1]
 gi|314973388|gb|EFT17484.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL053PA1]
 gi|314978543|gb|EFT22637.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL072PA2]
 gi|314983912|gb|EFT28004.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL005PA1]
 gi|314988096|gb|EFT32187.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL005PA2]
 gi|314989902|gb|EFT33993.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL005PA3]
 gi|315080612|gb|EFT52588.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL078PA1]
 gi|315085626|gb|EFT57602.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL002PA3]
 gi|315088323|gb|EFT60299.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL072PA1]
 gi|315095934|gb|EFT67910.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL038PA1]
 gi|315105623|gb|EFT77599.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL030PA1]
 gi|315108650|gb|EFT80626.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL030PA2]
 gi|327326215|gb|EGE68005.1| putative RNA methyltransferase [Propionibacterium acnes HL096PA2]
 gi|327330284|gb|EGE72033.1| putative RNA methyltransferase [Propionibacterium acnes HL097PA1]
 gi|327331909|gb|EGE73646.1| putative RNA methyltransferase [Propionibacterium acnes HL096PA3]
 gi|327443112|gb|EGE89766.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL013PA2]
 gi|327445894|gb|EGE92548.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL043PA2]
 gi|327448125|gb|EGE94779.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL043PA1]
 gi|327453170|gb|EGE99824.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL092PA1]
 gi|328753441|gb|EGF67057.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL020PA1]
 gi|328760824|gb|EGF74390.1| putative RNA methyltransferase [Propionibacterium acnes HL099PA1]
 gi|332675461|gb|AEE72277.1| SAM-dependent methyltransferase [Propionibacterium acnes 266]
          Length = 393

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+  R  +         F Q + G    + + V+ + + 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|315077986|gb|EFT50037.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL053PA2]
          Length = 393

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+  R  +         F Q + G    + + V+ + + 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|254581166|ref|XP_002496568.1| ZYRO0D03124p [Zygosaccharomyces rouxii]
 gi|238939460|emb|CAR27635.1| ZYRO0D03124p [Zygosaccharomyces rouxii]
          Length = 591

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 23/161 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           L++ YCG+G FS+  ++   +V  VEI+  SV  A  N   N V N K IV  + K F  
Sbjct: 444 LVDAYCGSGLFSICSSKGVAKVTGVEISADSVSFAETNAKNNGVENCKFIVGKAEKLF-- 501

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329
                      + ID  + R  ++ +DPPR G D+  +  + + YP  I+YISCN  S  
Sbjct: 502 -----------ESIDTPNDR-TSVILDPPRKGCDELFMRQLSEYYPARIVYISCNVHSQA 549

Query: 330 RDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD+            + IE L  FD FP T H+E   ++ R
Sbjct: 550 RDVEFFLKDTERGKDYKIESLRGFDFFPQTHHVESVCVMSR 590


>gi|291545363|emb|CBL18471.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5]
          Length = 453

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 17/185 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N  I    L        G+ G+  + +LYCG G  SL LA+    V  VEI   +
Sbjct: 281 SFFQVNP-IQTEKLYGKALEYAGLTGNETVWDLYCGIGTISLFLAQKAKFVRGVEIVPQA 339

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++ AR N   N + NV+     ++E    + R  E N +            I VDPPR G
Sbjct: 340 IDNARENAKLNGIENVEFFVGKAEE---VLPRGYEKNGV--------YADVIVVDPPRKG 388

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
            D+  +  + +  P  ++Y+SC+  +L RDL +L +  + + R++  D FP   H+E   
Sbjct: 389 CDEVLLNTILKMKPERVVYVSCDSATLARDLKVLCAEDYELVRVSTTDMFPQGVHVETVC 448

Query: 361 LLVRK 365
           LL RK
Sbjct: 449 LLSRK 453


>gi|227499478|ref|ZP_03929589.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC
           35098]
 gi|227218540|gb|EEI83783.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC
           35098]
          Length = 461

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 125/286 (43%), Gaps = 44/286 (15%)

Query: 84  NALMIEMMATIRLE-PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           N +M+ ++ T  +    +R KLF + YL     +  +  +YH +++D+  +  I      
Sbjct: 215 NEIMVLLVTTSDMSFDSIRKKLF-LSYLLDSKLEGKIVSVYH-IINDSCADAVI------ 266

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                       A ++ +   ++Y+ E +      L ++    SF QPN      + +  
Sbjct: 267 ------------AEESHLIYGKEYIREEMM----GLSFKISPFSFFQPNIFTAEKLYQKA 310

Query: 203 LAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
               +   + ++L+LY G G  + ++A        +EI + +VE A+ N   N ++N+  
Sbjct: 311 FDLARIDEKMNVLDLYSGTGTITQLMALKAKHATGIEIVEEAVEKAKENALLNKIDNIDF 370

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319
           +                 + L++I+  S R+  + +DPPR+G+   ++  +        +
Sbjct: 371 LCG---------------DVLEEIEKVSNRYDVVILDPPRAGIAPQSLEKILKMKVDKFV 415

Query: 320 YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           YISCNP +   +    +     I+   +FDQFP +RH+E   LL R
Sbjct: 416 YISCNPKTQLENFKDFIDQGFIIKDFEIFDQFPRSRHLESIALLTR 461


>gi|223044024|ref|ZP_03614064.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
           SK14]
 gi|222442567|gb|EEE48672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
           SK14]
          Length = 455

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A+ N   N +NN              
Sbjct: 311 VLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKDAQENATKNQLNNTTF----------- 359

Query: 273 MRREREFNRLKDI----DIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326
                E  + +D+         +   + VDPPR G D+  +  +++  P  I+YISCNP 
Sbjct: 360 -----ECGKAEDVILEWKAQGIKPDVVMVDPPRKGCDETFIKTLLKLNPKRIVYISCNPS 414

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD  +LS  + +  +   D FP T H+E   L  RK
Sbjct: 415 TQQRDAQLLSDNYHLVEITPVDMFPQTTHIETVALFERK 453


>gi|152969447|ref|YP_001334556.1| 23S rRNA methyluridine methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150954296|gb|ABR76326.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 375

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A    +Q  + +L+CG G F L  A    R+  +EIA
Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPTMRLTGIEIA 263

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR + A   ++N+    + S +F      E +  +L            + V+PP
Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEADAPQL------------VLVNPP 308

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+       +   A P+I+Y SCN  ++  D++ LS  + +ER+ LFD FP+T H E 
Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLS-GYRVERVQLFDMFPHTAHYEV 367

Query: 359 GVLLVRK 365
             LLVR+
Sbjct: 368 LTLLVRE 374


>gi|256752392|ref|ZP_05493252.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748727|gb|EEU61771.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 453

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++YCG G  SL  A+    V  +E    +VE A+ N   N + NV+ +   +      
Sbjct: 309 VIDVYCGIGTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDA------ 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E+    L D  + +     + +DPPR G D + +  +++  P  I+Y+SCNP +L R
Sbjct: 363 ---EKVMPELADKGVKA---DVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLAR 416

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L    +    +   D FPYT H+E   L+  K
Sbjct: 417 DLRYLEDNGYKTMEVQPVDMFPYTHHVESVCLITNK 452


>gi|164687720|ref|ZP_02211748.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM
           16795]
 gi|164603494|gb|EDQ96959.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM
           16795]
          Length = 453

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L +LY G G    VL++   +V  +EI + +VEAA  N   N + + + +         A
Sbjct: 311 LYDLYSGTGTIGQVLSQKARKVYGIEIVEEAVEAANENAKLNGLTHCEFI---------A 361

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
               +  N LK+      R   I VDPPR G+    V  +  +    I+YISCNP +L  
Sbjct: 362 GDVAKTVNSLKE------RPDIIIVDPPRPGIHKDAVRDISKFNAEEIIYISCNPKTLVV 415

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL    S  + ++++   D FP T H E  VLL RK
Sbjct: 416 DLQGFESYGYEVKKVRCMDMFPNTPHCETVVLLQRK 451


>gi|159029832|emb|CAO90886.1| trmA [Microcystis aeruginosa PCC 7806]
          Length = 460

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 26/217 (11%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
             +T     RDY++E+   AG  L Y+   ++F Q N      +   +    + ++G+  
Sbjct: 258 GTQTTTIAGRDYINEKF--AG--LTYQLAADTFFQINTEAAEALFSLICQKLE-LKGEEI 312

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G F+L LA+    V+ +E    S++ A+ N   N + N   +  +       
Sbjct: 313 LIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNDITNTTFILGAV------ 366

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E+   +L      + +   I +DPPR G D + +  ++Q     I+YISC   +L R
Sbjct: 367 ---EKTLPQL------TVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLAR 417

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVRK 365
           DL  L  T   + L +   D FP T H+EC   L +K
Sbjct: 418 DLQYLCKTGDYQLLEVQTADFFPQTPHVECAAFLRQK 454


>gi|16077869|ref|NP_388683.1| RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308637|ref|ZP_03590484.1| hypothetical protein Bsubs1_04463 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312961|ref|ZP_03594766.1| hypothetical protein BsubsN3_04414 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317887|ref|ZP_03599181.1| hypothetical protein BsubsJ_04358 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322160|ref|ZP_03603454.1| hypothetical protein BsubsS_04454 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314530|ref|YP_004206817.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
 gi|50401310|sp|O31545|YFJO_BACSU RecName: Full=Uncharacterized RNA methyltransferase yfjO
 gi|2633126|emb|CAB12631.1| putative RNA methyltransferase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|2780399|dbj|BAA24300.1| YfjO [Bacillus subtilis]
 gi|291483243|dbj|BAI84318.1| hypothetical protein BSNT_01338 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020804|gb|ADV95790.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
          Length = 466

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   + +A     V  +++ K S++ A+ N   + + N   V  +++ +   
Sbjct: 321 VVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWLPK 380

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             +R   + VDPPR+G D   +  ++       +Y+SCNP +L +
Sbjct: 381 WTKE------------GFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAK 428

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + ++ +   D FP T H+E    LV K S
Sbjct: 429 DLQTLSKDYRVDYIQPVDMFPQTAHVEAVARLVLKSS 465


>gi|296815714|ref|XP_002848194.1| tRNA methyltransferase [Arthroderma otae CBS 113480]
 gi|238841219|gb|EEQ30881.1| tRNA methyltransferase [Arthroderma otae CBS 113480]
          Length = 545

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 21/183 (11%)

Query: 190 PNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           P    + + +E  +AAT   +   LL+ YCG+G F++VL+  F   L +++A  S++ AR
Sbjct: 369 PEPKSDANPMESKVAATSNPKLKYLLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCAR 428

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   + V N       + +              KDI   + +   + +DPPR G D   
Sbjct: 429 ENAKLSKVPNTGFAAADAADL------------FKDIPYPADQ-TLLVIDPPRKGCDTNF 475

Query: 309 VGMVQAY--PHILYISCNPDSLCRDLSIL-----STTHTIERLALFDQFPYTRHMECGVL 361
           +  + AY    +LY+SCN  +  RD+ +L        + IE +  FD FP T H+E   +
Sbjct: 476 LNQLLAYGPTRVLYVSCNVHTQARDVGVLIEGKNGVRYNIESIRGFDFFPQTSHVESVAV 535

Query: 362 LVR 364
           L +
Sbjct: 536 LTK 538


>gi|289705334|ref|ZP_06501730.1| 23S rRNA methyluridine methyltransferase [Micrococcus luteus SK58]
 gi|289557849|gb|EFD51144.1| 23S rRNA methyluridine methyltransferase [Micrococcus luteus SK58]
          Length = 403

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 106/254 (41%), Gaps = 24/254 (9%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--- 185
           DA R     L D L AR     ++  AN     +     DE + +AG   +  ++     
Sbjct: 157 DALRAAVPGLLDDLAARGTPAAVV-SANLLPEHVALPEGDEEIVLAGGPTLTMRLNGVGL 215

Query: 186 -----SFTQPNA----GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
                 F Q N     G+     EWV  A  G+     +LYCG G F+  LAR   R + 
Sbjct: 216 RLRPQGFFQTNTAVTEGLYATAAEWV--AEGGVPASAWDLYCGVGGFAFHLARAGVRDV- 272

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE-REFNRLKDIDIHSYRFKTI 295
             +   +   A     A  +     VR S+ + T A+  E R        +    R   +
Sbjct: 273 WGMESSAEAVAAARETAAELGLADRVRFSAGDATSALSFEKRRAPEALSFEKRRARPDAV 332

Query: 296 FVDPPRSG----LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            V+PPR G    L DA  G     P +LY SCNP +L +DL+ +   + + R+ +FD FP
Sbjct: 333 VVNPPRRGIGAELADALEG--SGVPTVLYSSCNPATLAQDLARMPR-YRVARVQVFDMFP 389

Query: 352 YTRHMECGVLLVRK 365
            TRH E   LL R+
Sbjct: 390 QTRHAEVLTLLTRR 403


>gi|330720605|gb|EGG98867.1| RNA methyltransferase2C TrmA family [gamma proteobacterium
           IMCC2047]
          Length = 418

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 107/243 (44%), Gaps = 34/243 (13%)

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE---------NSFT 188
           LRD   A+ + I L      T   L  +  D+RLT       YR  E           FT
Sbjct: 196 LRDFGEAQDFHIYLQPGGPDTVSKLWPEQGDDRLT-------YRLDEFDVEMRFHPMDFT 248

Query: 189 QPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVE 245
           Q NA IN  ++   L     +Q D  +L+L+CG GNF++ LAR     V+ VE ++  VE
Sbjct: 249 QVNADINRKVVHLALQYLD-VQPDERVLDLFCGLGNFTMPLARSTGAAVIGVEGSEAMVE 307

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
               N   N + NV+     + + TQ    +               F  I +DPPRSG  
Sbjct: 308 RGFENARHNGLENVEFF---AADLTQDFEHQ---------PWSKQGFDKILIDPPRSGAL 355

Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
           +    + +     I+Y+SCNP +L RD   L+   +T++   + D FP T H+E   +  
Sbjct: 356 EVIQKIARFKAKRIVYVSCNPATLARDAGELALHGYTLKAAGVLDMFPQTAHVESIAVFD 415

Query: 364 RKP 366
            +P
Sbjct: 416 YQP 418


>gi|310830057|ref|YP_003962414.1| hypothetical protein ELI_4517 [Eubacterium limosum KIST612]
 gi|308741791|gb|ADO39451.1| hypothetical protein ELI_4517 [Eubacterium limosum KIST612]
          Length = 454

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G  + VLA    +V+ +E+ + +VEAA+ N  AN ++N   +          
Sbjct: 315 IFDLYCGTGTIAQVLAPVAKKVIGIELIEEAVEAAKINAEANGLHNCAFIA------GDV 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           M +  E     DI         I +DPPR G+    +  +  +     +Y+SC   SL R
Sbjct: 369 MEKVAELPDNPDI---------IILDPPRDGIHPKAIFKIIGFKPDTFIYVSCKATSLAR 419

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL       + +E++   D FP+  H+E  V L R
Sbjct: 420 DLPFFKEAGYGVEKVCCVDMFPHVGHVETVVKLSR 454


>gi|257784455|ref|YP_003179672.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469]
 gi|257472962|gb|ACV51081.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469]
          Length = 441

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 24/185 (12%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N      ++E VL+    +Q D   ++LYCG G F+L LA+    V AVE   P+
Sbjct: 274 SFFQVNTKGAEKLVELVLSGLD-VQPDDEAMDLYCGAGTFTLPLAKRAGFVSAVEAYGPA 332

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   R N+    ++NV  V   +          REF    D D+       I VDPPR+G
Sbjct: 333 VRDLRRNLELAKLDNVDAVGGDAG---------REFPD-TDADV-------IIVDPPRAG 375

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLAL--FDQFPYTRHMECG 359
           L    +  +   P   I Y+SC+P +L RDL       + + +++   D FP T H+E  
Sbjct: 376 LAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSYKPVSVTPVDLFPQTFHVENV 435

Query: 360 VLLVR 364
            LL R
Sbjct: 436 CLLKR 440


>gi|288574832|ref|ZP_06393189.1| RNA methyltransferase, TrmA family [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570573|gb|EFC92130.1| RNA methyltransferase, TrmA family [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 454

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 17/150 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G ++ELY G G  +++LA+    VLAVE   P++E    N++ N ++NVK +   +++  
Sbjct: 308 GAVVELYAGVGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVKGICNRAEDTV 367

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
           + M   +                 I VDPPR G     +  V   +   ++Y+SCNP +L
Sbjct: 368 RTMVEAKP--------------DVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTL 413

Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHME 357
            RD + ++S    +  L  FD FP T H+E
Sbjct: 414 ARDGAKLVSDGWELATLECFDLFPQTVHVE 443


>gi|225011827|ref|ZP_03702265.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium
           MS024-2A]
 gi|225004330|gb|EEG42302.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium
           MS024-2A]
          Length = 471

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 20/205 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSF--TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           +D++ E L      L ++    SF  T P     ++ +    AA KG +  + +LY G G
Sbjct: 279 QDFITEHLG----DLQFKITAKSFYQTNPKQAEVLYSIGKDFAALKGNE-IVYDLYTGTG 333

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L LA+   +++ VE    ++EAA  N   N + N        K+          FN 
Sbjct: 334 TIALSLAKQCAKIIGVESVPEAIEAANENATFNKIKNATFEVGDMKDC---------FN- 383

Query: 282 LKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
             D      + + +  DPPR+G+  D    +++  P  I+YISCN  +  RDL ++   +
Sbjct: 384 -DDFIKRHGKAEVVITDPPRNGMHPDVVKQLLKLAPQRIVYISCNSSTQARDLELMKGMY 442

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
           T+ +    D FP T H+E  VLL R
Sbjct: 443 TVVKSQAVDMFPQTHHVENVVLLHR 467


>gi|328353172|emb|CCA39570.1| hypothetical protein PP7435_Chr3-0612 [Pichia pastoris CBS 7435]
          Length = 546

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 160/383 (41%), Gaps = 55/383 (14%)

Query: 9   QYEQQLAEKVDRLRQ--------MMLAFQVPNLQIFRSEPIHYRMRAE----FHIWH-DG 55
           +Y QQL  K D +          +  + ++P++      P+ Y  R +    F I     
Sbjct: 177 EYAQQLLLKRDTIVNAYKFFAPILTASGKLPDMGSTVPSPLQYSYRTKLTPHFEIPRRKT 236

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL------FQIDY 109
            D     F   +K R +   F P  + +N+ ++++   +    ++   L      F+  Y
Sbjct: 237 QDFQKPSFGFGSKGRPK---FRPEIVDVNSSIVDIEECLIGTSIINTGLSNERKKFESTY 293

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGRANKTKICL--DRDY 166
              +    I+       + D   E     RD      K +++L   + + K C+   R  
Sbjct: 294 NNYKRGATILLRENTTPVADPPVETGEGSRDGTGEISKAEVELPDGSKQLKTCVTEPRQI 353

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNF 223
           V E   + G    +   E  F Q N  I   ++++V   L      +  L++ YCG+G F
Sbjct: 354 VTE--IINGNKFQFSAGE--FFQNNNSILPDIIKYVQDNLKLDPNGENYLVDAYCGSGLF 409

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           S+  A    +V+ VEI+  SV+ A +N   N++ N + +           + E+ F    
Sbjct: 410 SISCASSVKKVIGVEISADSVKFATHNAELNNIENCEFI---------TGKAEKIF---- 456

Query: 284 DIDIHSYRFKT-IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS--ILSTT 338
             DI   R +T I +DPPR G DD  +  +  +    I+YISCN  S  RDL   I +T+
Sbjct: 457 -ADIQLPRDQTSIILDPPRKGCDDVFLTQLSEFKPKKIIYISCNVHSQARDLEYFINNTS 515

Query: 339 HT----IERLALFDQFPYTRHME 357
           +     I+ +  FD FP T H+E
Sbjct: 516 NGFQYRIDSIRGFDFFPQTHHVE 538


>gi|323467070|gb|ADX70757.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
           helveticus H10]
          Length = 458

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ + +++ A+ N   N + N K     ++E    
Sbjct: 307 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEI--- 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
           M R  +     D+         +FVDPPR GL    +   V+  P  I+YISCNP +L R
Sbjct: 364 MPRWAKSGLKTDV---------VFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVR 414

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +    ++   R+   D FP T H+E   +L R
Sbjct: 415 DLQLFQEKSYEFNRIDPVDMFPQTPHVESVTVLKR 449


>gi|225858819|ref|YP_002740329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
 gi|225721367|gb|ACO17221.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
          Length = 453

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC VLL R+
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVVLLQRR 451


>gi|326693112|ref|ZP_08230117.1| RNA methyltransferase [Leuconostoc argentinum KCTC 3773]
          Length = 506

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 156/384 (40%), Gaps = 47/384 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QLA K D + Q +  FQ            I  + P  YR +A+F +   GD L   M
Sbjct: 141 YPAQLAFKKDVIAQALEKFQPRGWTDYDLRDTIGMANPYEYRNKAQFPVRKIGDKLSVGM 200

Query: 63  FDQQTKERMRIDYFM---PGSL--------LINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           + + + + + +       P ++        L++ L + +    +    ++  + +  + T
Sbjct: 201 YKRSSHDLVDLPVVHTQDPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVKTIVARASHTT 260

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK--YQIQLIGRAN-----KTKICLDR 164
            +    +VT       D A  E    +  AL      +Q    GR +     +T     +
Sbjct: 261 GEVQLTVVTNTDGFPGDAALIEA---INQALPEVTGIFQNFNPGRTSIVWGEETIKLWGK 317

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY++E  T+ G+T  ++    +F Q N      +    LAA      D L++ Y G G  
Sbjct: 318 DYIEE--TIMGKT--FQLSPRAFMQLNYTQMTVVYNEALAALDLTHADKLVDSYAGVGTI 373

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +EI   +V+ A  N   NH+ N K    +++E     + E       
Sbjct: 374 GLSLADKVGEVRGMEIIPEAVDDANINAEINHITNAKYEIGTAEELFPKWQAE------- 426

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTI 341
                 +    + VDPPR+GLD A    +++  P   +YISCN  SL RDL  L+  + +
Sbjct: 427 -----GWIADALVVDPPRTGLDTALRREILRTKPEKFVYISCNASSLARDLVDLTQAYQV 481

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP T   E  V L  +
Sbjct: 482 EYIQSIDMFPQTARWEGVVKLTHR 505


>gi|307704726|ref|ZP_07641623.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597]
 gi|307621705|gb|EFO00745.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597]
          Length = 452

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F Q N G+   + +  +      + D+ ++ Y G G   L +A+H   V  VE+   +V
Sbjct: 280 AFYQVNTGMAEKLYQTAIDFAALKEDDVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAV 339

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E ++ N   NH++N   V  +++    AM+     N LKD      +   I VDPPR GL
Sbjct: 340 ENSKKNAQLNHISNAHYVCDTAE---NAMK-----NWLKD----GIQPSLILVDPPRKGL 387

Query: 305 DDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
            ++ +          I YISCN  ++ RD+ +     + ++++   D FP T H+EC  L
Sbjct: 388 TESFIKASSQTGADRIAYISCNVATMARDIKLYRELGYELKKVQPVDLFPQTHHVECVSL 447

Query: 362 LVRK 365
           L ++
Sbjct: 448 LEKR 451


>gi|289449975|ref|YP_003474465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184522|gb|ADC90947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 458

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 20/200 (10%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227
           R T+ G T +      SF Q N  +    L   +    G+ G+  +++ YCG G  SL L
Sbjct: 272 RETIGGLTFMVSW--QSFLQVNT-LQAEKLYQTVLEVAGLSGNETVIDAYCGIGTISLYL 328

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           AR    V  VEI   ++E A  N   N ++N   V   ++        E           
Sbjct: 329 ARRAKFVYGVEIVPAAIEMAERNAEVNGIHNASFVCGKAETVIPQWVAE----------- 377

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERL 344
                  + VDPPR GL    +  +       I+Y+SCNP +L RD++ +L   +    +
Sbjct: 378 -GLAPDVVVVDPPRKGLATEVIEALSTVRPAKIVYVSCNPATLARDMALLLKAGYHAGDV 436

Query: 345 ALFDQFPYTRHMECGVLLVR 364
              D FP T H+E  VL+ R
Sbjct: 437 QPVDMFPQTPHVESVVLMSR 456


>gi|221194774|ref|ZP_03567831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC
           49626]
 gi|221185678|gb|EEE18068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC
           49626]
          Length = 468

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 95/207 (45%), Gaps = 28/207 (13%)

Query: 169 ERLTVAGR--TLI----YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
           ERL+ AG    LI     R    SF Q N      ++E VL+A      D  ++LYCG G
Sbjct: 276 ERLSGAGSWSELIGDERMRVSAPSFFQVNTKGAEKLVELVLSALDVRDSDEAMDLYCGAG 335

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F+L LAR    V AVE   P+V   R N+     +NV  +   +          R F  
Sbjct: 336 TFTLPLARRVGFVSAVESYGPAVRDLRRNLEDAGWSNVDAIGGDAG---------RSFPD 386

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTH 339
             D D+       I VDPPR+GL    V  +  Q+   I Y+SC+P +L RDL       
Sbjct: 387 -TDADV-------IVVDPPRAGLAPDVVKQLSEQSARAIAYVSCDPATLARDLRRFVDAG 438

Query: 340 TIERLAL--FDQFPYTRHMECGVLLVR 364
           T + +++   D FP T H+E  VL+ R
Sbjct: 439 TFKPVSVTPVDLFPQTFHVENVVLMSR 465


>gi|153854119|ref|ZP_01995427.1| hypothetical protein DORLON_01418 [Dorea longicatena DSM 13814]
 gi|149753168|gb|EDM63099.1| hypothetical protein DORLON_01418 [Dorea longicatena DSM 13814]
          Length = 470

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 113/251 (45%), Gaps = 37/251 (14%)

Query: 129 DAWRECAIRLR------DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           DAW E    +         LH +   +  + +   T++   +DY  E L      L ++ 
Sbjct: 240 DAWLEKMTAMNFDGTLVGILHTKNDSLADVVKDEGTEVLFGQDYFYEELL----GLKFKI 295

Query: 183 IENSFTQPNAGINVHML-----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
              SF Q N+ +   +L     E++    + +   + +LY G G  + +LA    +V+ V
Sbjct: 296 TPFSFFQTNS-LGAEVLYETAREYIGDTNEKV---VFDLYSGTGTIAQILAPVAKKVVGV 351

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI + +VEAA+ N   N+++N              ++   E   + D+         I +
Sbjct: 352 EIVEEAVEAAKENAKLNNLDNCTFWA------GDVLKVIDELGEVPDL---------IML 396

Query: 298 DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354
           DPPR G++   +  +  +    ++YI+C P SL RDL ++    + +E+++  D FP T 
Sbjct: 397 DPPRDGVNPKALMKILNFGVERLVYIACKPTSLARDLEMIQGRGYKVEKISGVDLFPGTY 456

Query: 355 HMECGVLLVRK 365
           H+E   LL +K
Sbjct: 457 HVETVCLLSKK 467


>gi|325269116|ref|ZP_08135736.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324988503|gb|EGC20466.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 474

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 24/207 (11%)

Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGN 220
           +T  G   I+  +E+        SF Q N     H+   V      + GD L  +LY G 
Sbjct: 280 ITFKGNDYIFETMEDLKFKVGPKSFYQTNTEQAYHLYS-VAREFASLTGDELVYDLYTGT 338

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +  +A    +V+ +E    ++E A+ N   N+++N        K+            
Sbjct: 339 GTIANFVAGKARKVIGIEYVPEAIEDAKVNSEINNISNTLFYAGDMKDIL---------- 388

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTT 338
             +D      R   I  DPPR+G+    + ++  A P  I+Y+SCNP +  RDL++L   
Sbjct: 389 -TEDFISRQGRPDVIITDPPRAGMHPDVINVILGASPERIVYVSCNPATQARDLALLDAD 447

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T H+E  VLL ++
Sbjct: 448 YQVAAVQPVDMFPHTPHVENVVLLEKR 474


>gi|157963447|ref|YP_001503481.1| 23S rRNA methyluridine methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|157848447|gb|ABV88946.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella pealeana
           ATCC 700345]
          Length = 358

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 20/170 (11%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           EWV A  K     L +L+CG G F L  A     +  +EI+  ++  A+ +     +  V
Sbjct: 207 EWV-AELK--PSSLWDLFCGVGGFGLHCASKTIPLTGIEISSEAIACAKISAETMGLTQV 263

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPH 317
               + S  F Q                 + +   + V+PPR G+ ++    +   A   
Sbjct: 264 DFTALDSTGFAQGCDA-------------TDKPDVVIVNPPRRGIGESLCQSLSDFAPKA 310

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           ILY SCNP +L +DL+ +   H I+++ LFD FP+T H E  V+LV KPS
Sbjct: 311 ILYSSCNPHTLAKDLANIQGYH-IQKVQLFDMFPHTDHFEVLVMLV-KPS 358


>gi|323693228|ref|ZP_08107446.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323502711|gb|EGB18555.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 576

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 153/386 (39%), Gaps = 56/386 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQT 67
           Y+QQLAEK  R+ +++         I   EP+HYR +      HD  G+ L  +      
Sbjct: 215 YKQQLAEKQKRMEELLKGICPVKPIIGMKEPLHYRNKVHAVFGHDRKGNPLSGVY----- 269

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA-KLFQIDYLTS-------------Q 113
           KE   I   +   L+ +    E++ TIR   +L++ K+   D  T               
Sbjct: 270 KEGTHILVPVEKCLIEDEKADEIIGTIR--GMLKSFKIRTFDEDTGYGFLRHVLVRRGFA 327

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDY 166
           + + +V L+    +  +       LR+        IQ I          +K  +   R Y
Sbjct: 328 TGEIMVVLVTASPVFPSKNNFVKALREKHPEITTIIQNINNRSTSMVLGDKEHVLYGRGY 387

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFS 224
           +++ L      L +R    SF Q N+     +L        G+ G    L+ YCG G   
Sbjct: 388 IEDVLC----GLRFRISSKSFYQVNS-AQTELLYNKALQLAGLTGKEKALDAYCGIGTIG 442

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L+ +R    V+ VE+   +V  A  N   N V N++     +  F   M  + E      
Sbjct: 443 LIASRKAGEVIGVELNPDAVRDAVQNAKMNDVKNIQFYCNDAGRFIVNMAEKGE-----K 497

Query: 285 IDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTH 339
           +D+       I +DPPRSG      DA   M      ++Y+SC P++L RDL   +   +
Sbjct: 498 VDV-------ILMDPPRSGSTKEFIDAVAKM--GPERVVYVSCGPETLVRDLRWFMGNGY 548

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
                   D F  T H+E  VL+ RK
Sbjct: 549 RAVEAWPVDMFGGTGHVETVVLIQRK 574


>gi|302379451|ref|ZP_07267938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312796|gb|EFK94790.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           ACS-171-V-Col3]
          Length = 496

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G  ++ +  + +  + VE+ K +V+ A  N   N++ +++ +   S+     
Sbjct: 264 ILDLYCGIGTTTMYIG-NGNNTIGVEVVKDAVKDANQNKKLNNLESIQFIEEKSENVVGK 322

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           + +E               F  I VDPPR GLD   V  +       ++YISC+P +L R
Sbjct: 323 LTQEH--------------FDVILVDPPRKGLDPKVVDAIIKSTARKLVYISCDPATLAR 368

Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVR 364
           DL  L+     +  + L D F  T H+E   LL +
Sbjct: 369 DLKALTENGFAVRDVKLVDMFAKTMHVETVALLSK 403


>gi|238786284|ref|ZP_04630226.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia bercovieri
           ATCC 43970]
 gi|238712807|gb|EEQ04877.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia bercovieri
           ATCC 43970]
          Length = 425

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 21/184 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   +A      Q  +L+L+CG GNF+L LA+    V+ VE     V 
Sbjct: 251 FIQVNDVVNQKMVAQAIAWLDVQPQERVLDLFCGMGNFTLPLAKRAREVVGVEGVAALVA 310

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
             +YN   N + NV                    N   DI    +    F  + +DP R+
Sbjct: 311 NGQYNARNNTLPNVSFFHE---------------NLESDISCQPWAVQGFDKVLLDPARA 355

Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360
           G       +V+  P  ++Y+SCNP +L RD  + L+  + + ++ + D FP+T H+E   
Sbjct: 356 GAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMA 415

Query: 361 LLVR 364
           L ++
Sbjct: 416 LFMQ 419


>gi|257087679|ref|ZP_05582040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6]
 gi|256995709|gb|EEU83011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6]
 gi|315025522|gb|EFT37454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2137]
          Length = 456

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 156/385 (40%), Gaps = 49/385 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +      +   +
Sbjct: 92  YKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQIDGQVEAGL 151

Query: 63  FDQQTKERMRIDYFM---PGSLLINALMIEMMATIRL--------EPLLRAKLFQIDYLT 111
           +   + + + ID  +   P +  +   +++++   +L          + R  + ++   T
Sbjct: 152 YQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTLMVRVGIQT 211

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            +     +T    + L    +E  +R  +        I    +  KT + +     D+ L
Sbjct: 212 GEVQVVFIT----QSLKFPQKEKMVRAINEQLPEVVSIMQNVQNKKTSLVMG----DDTL 263

Query: 172 TVAGRTLIYRQIENSF--TQPNAGINVHMLEWVLAATKGIQG-------DLLELYCGNGN 222
            + G+  I   I +      P A   ++  +  +   +GI+         +++ YCG G 
Sbjct: 264 HLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA+   +V  ++    +++ AR+N     V N      ++++      +E      
Sbjct: 324 IGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE------ 377

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340
                  ++   I VDPPR+GLD    T  + Q    ++YISCN  +L RDL  L+  + 
Sbjct: 378 ------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLAKVYQ 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++ L   D FP T   E  V L RK
Sbjct: 432 VDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|256850547|ref|ZP_05555973.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|256712570|gb|EEU27565.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
          Length = 451

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%)

Query: 157 KTKICLDR-DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211
           KT + L + DY+   ++++T     L +R    SF Q N+     + +  +  A  G   
Sbjct: 246 KTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDD 305

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++ Y G G   L +A+H   V  +E+ + +++ A+ N   N + N K     ++E   
Sbjct: 306 VVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEI-- 363

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329
            M R  +     D+         +FVDPPR GL    +   V+  P  ++YISCNP ++ 
Sbjct: 364 -MPRWAKKGMKTDV---------VFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMI 413

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +     +  +R+   D FP T H+E   +L +K
Sbjct: 414 RDLLLFQEQGYEFKRIDPVDMFPQTPHVEAVTVLTKK 450


>gi|57652118|ref|YP_186782.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87160330|ref|YP_494530.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195795|ref|YP_500605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151222047|ref|YP_001332869.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161510119|ref|YP_001575778.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141187|ref|ZP_03565680.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258451037|ref|ZP_05699073.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
           A5948]
 gi|262049941|ref|ZP_06022801.1| hypothetical protein SAD30_1411 [Staphylococcus aureus D30]
 gi|262053191|ref|ZP_06025349.1| hypothetical protein SA930_1196 [Staphylococcus aureus 930918-3]
 gi|282923236|ref|ZP_06330917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9765]
 gi|284024943|ref|ZP_06379341.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294849446|ref|ZP_06790188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9754]
 gi|304379083|ref|ZP_07361830.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81694159|sp|Q5HEM5|Y1957_STAAC RecName: Full=Uncharacterized RNA methyltransferase SACOL1957
 gi|57286304|gb|AAW38398.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126304|gb|ABD20818.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203353|gb|ABD31163.1| RNA methyltransferase, TrmA family, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150374847|dbj|BAF68107.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160368928|gb|ABX29899.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257861279|gb|EEV84091.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
           A5948]
 gi|259158918|gb|EEW44004.1| hypothetical protein SA930_1196 [Staphylococcus aureus 930918-3]
 gi|259161949|gb|EEW46531.1| hypothetical protein SAD30_1411 [Staphylococcus aureus D30]
 gi|282593147|gb|EFB98146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9765]
 gi|294823583|gb|EFG40010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9754]
 gi|302751769|gb|ADL65946.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304342318|gb|EFM08210.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315196232|gb|EFU26587.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139723|gb|EFW31592.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142360|gb|EFW34174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314573|gb|AEB88986.1| Uncharacterized RNA methyltransferase [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728677|gb|EGG65107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 453

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   ++E A+ N   N  NN   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|315922778|ref|ZP_07919018.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696653|gb|EFS33488.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 472

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G  +
Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIA 340

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             ++R   +V+ +E    ++E A+ N   N + N        K+  TQ            
Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKINAEINDIKNALFYAGDMKDILTQDF---------- 390

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341
            I+ H  R   I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L   + +
Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 448

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           + +   D FP+T H+E  VLL
Sbjct: 449 KAIQPVDMFPHTHHVENVVLL 469


>gi|46445882|ref|YP_007247.1| putative RNA methyl transferase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|51316633|sp|Q6MEM7|Y248_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc0248
 gi|46399523|emb|CAF22972.1| putative RNA methyl transferase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 434

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 16/186 (8%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             LI+R    +F Q +   ++++ + + + T  ++   +L+LYCG G  SL+LA     V
Sbjct: 253 ENLIFRFTPQAFIQNHPEQSLYIYKKICSLTIQLKSKKILDLYCGFGITSLLLASQGHFV 312

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             +E    ++  A+ N   NH+ +V+ +    ++      + +     K +D+       
Sbjct: 313 TGIEYNSDAIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQ-----KCVDL------- 360

Query: 295 IFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           + V+PPR GL  + +  ++ A P  ++YISC P +L RDLSIL    + I     +D FP
Sbjct: 361 VIVNPPRIGLSKSVIKILMSALPEDMIYISCMPSTLARDLSILCEDLYEIHECTAYDMFP 420

Query: 352 YTRHME 357
            T H+E
Sbjct: 421 QTSHVE 426


>gi|237719530|ref|ZP_04550011.1| RNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|229451390|gb|EEO57181.1| RNA methyltransferase [Bacteroides sp. 2_2_4]
          Length = 472

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G  +
Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFTGLTGNELVYDLYTGTGTIA 340

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             ++R   +V+ +E    ++E A+ N   N + N        K+  TQ            
Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKDILTQDF---------- 390

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341
            I+ H  R   I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L   + +
Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 448

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           + +   D FP+T H+E  VLL
Sbjct: 449 KAIQPVDMFPHTHHVENVVLL 469


>gi|299146119|ref|ZP_07039187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_23]
 gi|298516610|gb|EFI40491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_23]
          Length = 472

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G  +
Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIA 340

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             ++R   +V+ +E    ++E A+ N   N + N        K+  TQ            
Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKDILTQDF---------- 390

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341
            I+ H  R   I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L   + +
Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 448

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           + +   D FP+T H+E  VLL
Sbjct: 449 KAIQPVDMFPHTHHVENVVLL 469


>gi|220905833|ref|YP_002481144.1| TrmA family RNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219862444|gb|ACL42783.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7425]
          Length = 457

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 19/149 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL +AR   +V+ +EI   +V  A+ N   N + NV       ++    
Sbjct: 315 IVDAYCGIGTLSLPIARQAQQVIGLEIHPATVAQAKQNAIRNGLTNVSFYAGPVEQ---- 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +  + + L DI         + +DPPR G D + V  +     P I+Y+SCNP +L R
Sbjct: 371 --QLPQLDLLPDI---------VVLDPPRKGCDRSVVEHLSQLRPPRIVYMSCNPATLAR 419

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHME 357
           DL +L  +  + +E++   D FP T H+E
Sbjct: 420 DLHLLCQANPYELEQIQPADFFPQTAHVE 448


>gi|317127543|ref|YP_004093825.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
           2522]
 gi|315472491|gb|ADU29094.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
           2522]
          Length = 469

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 155/381 (40%), Gaps = 54/381 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           YE QL  K D +RQ    +   NL        I   EP  YR +++  + H    +   +
Sbjct: 103 YEGQLKGKKDIVRQAFERYTKINLDKVDFHDTIGMEEPWKYRNKSQMQVGHHQGKVIAGL 162

Query: 63  FDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEP--------LLRAKLFQIDYLT 111
           +   + + + ++  +   P +  +  ++ ++ A + + P        +LR  + ++ + T
Sbjct: 163 YSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPYNERKRTGVLRTIVTRVGFET 222

Query: 112 SQSDQAIVTLIYHRLLDDAWREC-AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
            +    +VT        D + E    RL D          ++   N  K  L   + DE 
Sbjct: 223 GEYQVVLVTAKKDIPKVDLFIEAIKQRLPDV-------TSIVQNINPKKTSLV--FGDET 273

Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
           + + G+  I   +          +F Q N  I    L         + G   +++ YCG 
Sbjct: 274 IVLYGKEKIEETMSEFRFNLSPRAFFQLNP-IQTKKLYDAAKEAAQLTGKEKVVDAYCGV 332

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L LA     +  +++ K S+E A+ N  A+ + N   V   ++       +E    
Sbjct: 333 GTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKAEHLLPEWEKE---- 388

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST- 337
                    +    + VDPPR+GLD+  +  +++  P  I+Y+SCNP +L +++  LS  
Sbjct: 389 --------GWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDALSKG 440

Query: 338 THTIERLALFDQFPYTRHMEC 358
            + ++ L   D FP T  +EC
Sbjct: 441 GYKLKALQPVDMFPQTAQVEC 461


>gi|218961437|ref|YP_001741212.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730094|emb|CAO81006.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 456

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 20/182 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF Q N G  + M+   L         +L+ YCG G   L LA    RV+ +E    ++E
Sbjct: 280 SFWQINTG-TMEMIISFLQDFVNSNNVILDAYCGIGAIGLSLADKVKRVILLEEFPQAIE 338

Query: 246 AARYNIAANHVNNVK-IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A+ N   N + NV  ++       +  + +E+                TI +DPPRSG+
Sbjct: 339 DAKENAVLNGLKNVSFVIGKVEDNLSAVLIKEKP--------------DTIIMDPPRSGV 384

Query: 305 -DDATVGMVQA-YPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360
             +A   ++QA    I+Y+SC P +L RDL+ L     + +  L  FD FP T H+EC  
Sbjct: 385 QQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGEKYKVVFLQPFDMFPNTWHIECLA 444

Query: 361 LL 362
           +L
Sbjct: 445 VL 446


>gi|161507077|ref|YP_001577031.1| RNA methyltransferase [Lactobacillus helveticus DPC 4571]
 gi|260102784|ref|ZP_05753021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           helveticus DSM 20075]
 gi|160348066|gb|ABX26740.1| RNA methyltransferase [Lactobacillus helveticus DPC 4571]
 gi|260083388|gb|EEW67508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           helveticus DSM 20075]
          Length = 450

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ + +++ A+ N   N + N K     ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEI--- 361

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
           M R  +     D+         +FVDPPR GL    +   V+  P  I+YISCNP +L R
Sbjct: 362 MPRWAKSGLKTDV---------VFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVR 412

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +    ++   R+   D FP T H+E   +L R
Sbjct: 413 DLQLFQEKSYEFNRIDPVDMFPQTPHVESVTVLER 447


>gi|262047051|ref|ZP_06020010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus MV-3A-US]
 gi|293381908|ref|ZP_06627876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 214-1]
 gi|312984350|ref|ZP_07791691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus CTV-05]
 gi|260572628|gb|EEX29189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus MV-3A-US]
 gi|290921555|gb|EFD98589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 214-1]
 gi|310894244|gb|EFQ43325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus CTV-05]
          Length = 449

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%)

Query: 157 KTKICLDR-DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211
           KT + L + DY+   ++++T     L +R    SF Q N+     + +  +  A  G   
Sbjct: 244 KTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDD 303

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++ Y G G   L +A+H   V  +E+ + +++ A+ N   N + N K     ++E   
Sbjct: 304 VVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEI-- 361

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329
            M R  +     D+         +FVDPPR GL    +   V+  P  ++YISCNP ++ 
Sbjct: 362 -MPRWAKKGMKTDV---------VFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMI 411

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +     +  +R+   D FP T H+E   +L +K
Sbjct: 412 RDLLLFQEQGYEFKRIDPVDMFPQTPHVEAVTVLTKK 448


>gi|254571419|ref|XP_002492819.1| tRNA methyltransferase [Pichia pastoris GS115]
 gi|238032617|emb|CAY70640.1| tRNA methyltransferase [Pichia pastoris GS115]
          Length = 572

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 159/383 (41%), Gaps = 55/383 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAF--------QVPNLQIFRSEPIHYRMRAE----FHIWH-DG 55
           +Y QQL  K D +      F        ++P++      P+ Y  R +    F I     
Sbjct: 203 EYAQQLLLKRDTIVNAYKFFAPILTASGKLPDMGSTVPSPLQYSYRTKLTPHFEIPRRKT 262

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL------FQIDY 109
            D     F   +K R +   F P  + +N+ ++++   +    ++   L      F+  Y
Sbjct: 263 QDFQKPSFGFGSKGRPK---FRPEIVDVNSSIVDIEECLIGTSIINTGLSNERKKFESTY 319

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGRANKTKICL--DRDY 166
              +    I+       + D   E     RD      K +++L   + + K C+   R  
Sbjct: 320 NNYKRGATILLRENTTPVADPPVETGEGSRDGTGEISKAEVELPDGSKQLKTCVTEPRQI 379

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNF 223
           V E   + G    +   E  F Q N  I   ++++V   L      +  L++ YCG+G F
Sbjct: 380 VTE--IINGNKFQFSAGE--FFQNNNSILPDIIKYVQDNLKLDPNGENYLVDAYCGSGLF 435

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           S+  A    +V+ VEI+  SV+ A +N   N++ N + +           + E+ F    
Sbjct: 436 SISCASSVKKVIGVEISADSVKFATHNAELNNIENCEFI---------TGKAEKIF---- 482

Query: 284 DIDIHSYRFKT-IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS--ILSTT 338
             DI   R +T I +DPPR G DD  +  +  +    I+YISCN  S  RDL   I +T+
Sbjct: 483 -ADIQLPRDQTSIILDPPRKGCDDVFLTQLSEFKPKKIIYISCNVHSQARDLEYFINNTS 541

Query: 339 HT----IERLALFDQFPYTRHME 357
           +     I+ +  FD FP T H+E
Sbjct: 542 NGFQYRIDSIRGFDFFPQTHHVE 564


>gi|227877027|ref|ZP_03995119.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           crispatus JV-V01]
 gi|256844662|ref|ZP_05550147.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|227863398|gb|EEJ70825.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           crispatus JV-V01]
 gi|256613203|gb|EEU18407.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
          Length = 449

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%)

Query: 157 KTKICLDR-DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211
           KT + L + DY+   ++++T     L +R    SF Q N+     + +  +  A  G   
Sbjct: 244 KTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDD 303

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++ Y G G   L +A+H   V  +E+ + +++ A+ N   N + N K     ++E   
Sbjct: 304 VVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEI-- 361

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329
            M R  +     D+         +FVDPPR GL    +   V+  P  ++YISCNP ++ 
Sbjct: 362 -MPRWAKKGMKTDV---------VFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMI 411

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +     +  +R+   D FP T H+E   +L +K
Sbjct: 412 RDLLLFQEQGYEFKRIDPVDMFPQTPHVEAVTVLTKK 448


>gi|319654336|ref|ZP_08008424.1| YefA protein [Bacillus sp. 2_A_57_CT2]
 gi|317394036|gb|EFV74786.1| YefA protein [Bacillus sp. 2_A_57_CT2]
          Length = 460

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 69/149 (46%), Gaps = 17/149 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+    V  VEI   ++E A+ N   N + N       ++E    
Sbjct: 314 VIDAYCGIGTISLFLAQKAKEVFGVEIVPEAIEDAKRNADLNGMTNASFAVGKAEEV--- 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    + D        + + VDPPR G D+A +  + +     ++Y+SCNP +L R
Sbjct: 371 ---------IPDWYKKGNTAEVLVVDPPRKGCDEALLKTILSMKPKKVVYVSCNPGTLAR 421

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHME 357
           DL IL      TIE +   D FP T H E
Sbjct: 422 DLRILEDGGYRTIE-VQPVDMFPQTMHCE 449


>gi|329955143|ref|ZP_08296100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT
           12056]
 gi|328526142|gb|EGF53161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT
           12056]
          Length = 475

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 28/205 (13%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221
           T  G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G
Sbjct: 279 TFKGKDHIFEEMEGLRFKVGPKSFYQTNSK-QAYNLYKVARNFAGLTGNELVYDLYTGTG 337

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFN 280
             +  +++   +V+ +E    ++E A+ N   N + N        K+  TQ         
Sbjct: 338 TIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDMLTQDF------- 390

Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST 337
                 I+ Y R   I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L  
Sbjct: 391 ------INEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDA 444

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            + ++ +   D FP+T H+E  VLL
Sbjct: 445 KYKVKAVQPVDMFPHTHHVENVVLL 469


>gi|241895373|ref|ZP_04782669.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|241871347|gb|EER75098.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 483

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 159/384 (41%), Gaps = 47/384 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y+ QL  K D +RQ +  ++      ++        +P  YR +A+F +     +L   M
Sbjct: 119 YDGQLTFKQDVIRQALEKYKPAGYAHYKLLPTIGMDDPKEYRNKAQFPVREVDGELAVGM 178

Query: 63  FDQQTKERMRIDYFM---PGSLLINALMIEMMATIRL--------EPLLRAKLFQIDYLT 111
           + + + + + +       P +L +   + +++A ++L        + +++  + ++   T
Sbjct: 179 YKRHSHKLVDLPVVTTQHPATLKVVRGVRDILADMQLPIYNERKNKGIVKTLIARVSEST 238

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-------R 164
                 IVT    R L DA  E   R+  AL       Q I R   + I  D        
Sbjct: 239 GDVQLTIVT--NGRSLPDA-DELINRIHQALPEVVSIHQNINRGQSSLIWGDDTRQIWGE 295

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY+ E +   G+T  ++    +F Q N      + +  + A    + D L++ Y G G  
Sbjct: 296 DYITEEIN--GKT--FKLSPRAFLQLNPRQTQRLYQEAIKALDLTKADKLIDAYSGVGTI 351

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA H   V  ++    S++ A  N   NHV N      +++E      +E       
Sbjct: 352 GISLADHAGEVRGMDTVAESIDDANENAIDNHVTNATYYVGAAEELIPQWTQE------- 404

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTI 341
                 +    + VDPPR+GLD A    +++  P   +Y+SCN  +L RDL  L+  + +
Sbjct: 405 -----GWIADAVVVDPPRTGLDIALRQTILETKPEKFVYVSCNASTLARDLVDLAKVYRV 459

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           + +   D FP T   E  V   +K
Sbjct: 460 DYIQSIDMFPQTARWEGIVKFTKK 483


>gi|50914683|ref|YP_060655.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|73920514|sp|Q5XAU1|Y1337_STRP6 RecName: Full=Uncharacterized RNA methyltransferase M6_Spy1337
 gi|50903757|gb|AAT87472.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 451

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 155/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174
           Q  + ++  + +  A      R    L     Q++ +   +N +K      Y DE   + 
Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNCSK--SSEIYGDETEILW 260

Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           G+  I+ ++          +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 261 GQEAIHEEVLDYGFALSPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  +   +N          + +A + E    +    
Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNA---------YYEAGKAEDIIPKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|314966734|gb|EFT10833.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL082PA2]
 gi|327327560|gb|EGE69336.1| putative RNA methyltransferase [Propionibacterium acnes HL103PA1]
          Length = 393

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%)

Query: 161 CLDRD-----YVDERLTVAGRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKG 208
           CL  D       D +L   G T+        ++     F Q + G    + + V+   K 
Sbjct: 192 CLSEDPEVSVIADGQLVAGGETMTAHVGQRRWKVGAGGFWQMHPGAAEALADAVIGGLKP 251

Query: 209 IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            QGD  L+LYCG G F+ +LA    RV  VE+++ +V  AR N+                
Sbjct: 252 QQGDEALDLYCGVGLFAGLLADRGVRVRGVEVSRQAVALARRNVPGG------------- 298

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
            FT A R ER   R+      + +   + +DPPR G     V  + +  P  I +++C+P
Sbjct: 299 RFT-AGRVERVLPRM------APKANIVVLDPPRRGARKTVVQAVARTSPRAIAHVACDP 351

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVRK 365
            +L RDL +      + R +  FD FP T H+E   +L  K
Sbjct: 352 AALARDLHLFDVNGYLPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|302387197|ref|YP_003823019.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
 gi|302197825|gb|ADL05396.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
          Length = 563

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 22/219 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
            +K  +   + Y+++ L        +R    SF Q N  +   +L        G+ G   
Sbjct: 359 GDKEHVLFGKGYIEDILC----GCRFRISSKSFYQVNP-VQTEVLYQKAIEAAGLTGKER 413

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   +V +++ + V+ VE+ + +V+ A  N   N + N++     + +F   
Sbjct: 414 VIDAYCGIGTIGIVASKYANEVIGVELNRDAVKDAVENAKINGIKNIRFFCNDAGKFMMN 473

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           M    E      +D+       +F+DPPRSG  +  +  V       ++Y+SC P++L R
Sbjct: 474 MAEIGEH-----VDV-------VFMDPPRSGSTEEFIDSVAKIRPEKVIYVSCGPETLAR 521

Query: 331 DLSILSTTHTIERLA-LFDQFPYTRHMECGVLLVRKPSG 368
           DL          ++    D FP T H+E  +L+ R  SG
Sbjct: 522 DLGYFRKKGYEAKMGWGVDMFPATSHVEAIILMTRSGSG 560


>gi|327314509|ref|YP_004329946.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
           F0289]
 gi|326945121|gb|AEA21006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
           F0289]
          Length = 478

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 16/194 (8%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVL 235
           L ++    SF Q N     H+   V  A   + G+ L  +LY G G  +  +AR+  +V+
Sbjct: 295 LKFKVGPKSFYQTNTEQAYHLYS-VARAFAALTGNELVYDLYTGTGTIANFVARNARKVI 353

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E    ++E A+ N   N ++N        K+              +D          I
Sbjct: 354 GIEYVPEAIEDAKVNAEINKIDNTLFYAGDMKDILT-----------EDFICRHGHPDVI 402

Query: 296 FVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
             DPPR+G+    + ++  A P  I+Y+SCNP +  RDL++L   + +  +   D FP+T
Sbjct: 403 ITDPPRAGMHQDVISVILGASPKRIVYVSCNPATQARDLALLDADYRVAAVQPVDMFPHT 462

Query: 354 RHMECGVLLVRKPS 367
            H+E  VLL ++ +
Sbjct: 463 PHVENVVLLEKREA 476


>gi|307710372|ref|ZP_07646812.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564]
 gi|307618849|gb|EFN97985.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564]
          Length = 367

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 224 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 283

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 284 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 331

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 332 DLGRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 366


>gi|295692415|ref|YP_003601025.1| RNA methyltransferase [Lactobacillus crispatus ST1]
 gi|295030521|emb|CBL50000.1| RNA methyltransferase [Lactobacillus crispatus ST1]
          Length = 449

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%)

Query: 157 KTKICLDR-DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211
           KT + L + DY+   ++++T     L +R    SF Q N+     + +  +  A  G   
Sbjct: 244 KTNVILGKKDYLVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDD 303

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++ Y G G   L +A+H   V  +E+ + +++ A+ N   N + N K     ++E   
Sbjct: 304 VVIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEI-- 361

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLC 329
            M R  +     D+         +FVDPPR GL    +   V+  P  ++YISCNP ++ 
Sbjct: 362 -MPRWAKKGMKTDV---------VFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMI 411

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +     +  +R+   D FP T H+E   +L +K
Sbjct: 412 RDLLLFQEQGYEFKRIDPVDMFPQTPHVEAVTVLTKK 448


>gi|271968013|ref|YP_003342209.1| 23S rRNA (uracil-5-)-methyltransferase [Streptosporangium roseum
           DSM 43021]
 gi|270511188|gb|ACZ89466.1| 23S rRNA (uracil-5-)-methyltransferase [Streptosporangium roseum
           DSM 43021]
          Length = 415

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 23/213 (10%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214
            +T++   R+++ ER  V  R   ++   + F Q + G    +L  VL       G+  L
Sbjct: 217 GRTRVVHGRNHLTER--VGDRD--FQVTGSGFWQVHPGAAATLLATVLEFAAPQPGEWAL 272

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA-M 273
           +LYCG G F+  LA         E   P  E A + + +  V  V+    + ++  QA  
Sbjct: 273 DLYCGVGLFAAGLA---------EAVGP--EGAVFGVESEAVA-VRDAERNLRDLPQARF 320

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
            R R  N L    I   R   + VDPPR+GL    V  V       I+Y+SC+P +L RD
Sbjct: 321 ARGRVENALDRFGIE--RADLVVVDPPRAGLGREVVDRVATLQAGRIVYVSCDPATLARD 378

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLV 363
           ++ L+   +++  L  FD FP T H+EC  LLV
Sbjct: 379 IAWLADHGYSLADLRAFDAFPMTHHVECVALLV 411


>gi|289550385|ref|YP_003471289.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis
           HKU09-01]
 gi|289179917|gb|ADC87162.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis
           HKU09-01]
          Length = 461

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ AR N   N ++N   V   +++    
Sbjct: 316 VLDTYCGIGTIGLYMAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMD 375

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            +RE              +   + VDPPR G +   +  ++   P  I+YISCNP +  R
Sbjct: 376 WQRE------------GIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQR 423

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D  +L+T + ++ +   D FP T H+E   L  +K
Sbjct: 424 DAHMLATQYDLKEITPVDMFPQTTHIETVALFKKK 458


>gi|255549690|ref|XP_002515896.1| RNA m5u methyltransferase, putative [Ricinus communis]
 gi|223544801|gb|EEF46316.1| RNA m5u methyltransferase, putative [Ricinus communis]
          Length = 577

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 28/212 (13%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           Y    +T   R L ++   NSF Q N      +L  ++    G++GD    +L+L+CG G
Sbjct: 376 YGKSTITEILRGLTFQISANSFFQTNTR-QAEVLYKLIEDCAGLRGDGSEIVLDLFCGTG 434

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LA     V   E+   ++  AR N   N + N   V+    + + +       N 
Sbjct: 435 TIGLTLAGRAKHVYGYEVVPQAISDARRNAELNGITNATFVQGDLNKISDSFG-----NN 489

Query: 282 LKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILS--- 336
               DI       +  DP R G  +      +    P I+Y+SCNP +  RDL  L    
Sbjct: 490 FPKPDI-------VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 542

Query: 337 ------TTHTIERLALFDQFPYTRHMECGVLL 362
                   + ++ L   D FP+T H+EC  LL
Sbjct: 543 EEQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 574


>gi|160884289|ref|ZP_02065292.1| hypothetical protein BACOVA_02267 [Bacteroides ovatus ATCC 8483]
 gi|156110028|gb|EDO11773.1| hypothetical protein BACOVA_02267 [Bacteroides ovatus ATCC 8483]
          Length = 472

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G  +
Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIA 340

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             ++R   +V+ +E    ++E A+ N   N + N        K+  TQ            
Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKDILTQDF---------- 390

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341
            I+ H  R   I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L   + +
Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 448

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           + +   D FP+T H+E  VLL
Sbjct: 449 KAIQPVDMFPHTHHVENVVLL 469


>gi|320449579|ref|YP_004201675.1| tRNA (uracil-5-)-methyltransferase superfamily [Thermus scotoductus
           SA-01]
 gi|320149748|gb|ADW21126.1| tRNA (uracil-5-)-methyltransferase superfamily [Thermus scotoductus
           SA-01]
          Length = 409

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 21/181 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SF+Q N      +LE  L    G +   LELY G+G FSL+LA  F  V+AVEI+K   
Sbjct: 242 ESFSQVNPLAMGELLEEALNLVSGGK-RALELYAGSGLFSLLLAPRFQEVVAVEISK--- 297

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           EA R   A      ++ VR    +  +A    R             RF  + +DPPR+GL
Sbjct: 298 EAERRGEADRRRLGIEHVRFHRGDAKEA----RNLG----------RFDLVVLDPPRTGL 343

Query: 305 D-DATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
             +    ++++ P  +LY++C+P +  RD+  ++   + +     +D FP+T H+E   L
Sbjct: 344 SPEVRAYLLKSRPKEVLYVACDPATWARDVGELVGGGYQLAFARPYDFFPFTHHVEVLSL 403

Query: 362 L 362
           L
Sbjct: 404 L 404


>gi|297617338|ref|YP_003702497.1| RNA methyltransferase, TrmA family [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145175|gb|ADI01932.1| RNA methyltransferase, TrmA family [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 458

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 81/163 (49%), Gaps = 23/163 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF--T 270
           +L+ Y G G  +L LA    +V+AVE  + +V  A+ N   N + NV+ +    +++   
Sbjct: 312 VLDAYSGVGTIALFLAERAKKVIAVEENEKAVADAQKNARGNGIKNVRFIAQRVEDWVTN 371

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPD 326
            A+  ER      D+ +         VDPPR GL+     A V M  A   ++Y+SCNP 
Sbjct: 372 AALDHER-----PDVAV---------VDPPRQGLNRGFLQALVTMSPA--RLVYVSCNPA 415

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           +L RDL  L+   +TI  +   D FP T H+E  VLL +   G
Sbjct: 416 TLARDLGHLANQGYTINAVQPVDMFPQTGHVETVVLLKKNNRG 458


>gi|86607994|ref|YP_476756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556536|gb|ABD01493.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 464

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            SF Q N         W+ A    ++G+  +L+ YCG G  +L+LA+   R + VE    
Sbjct: 295 TSFFQVNTEQAEAFFTWI-ADQLNLRGEETILDAYCGIGTLTLLLAQRAKRAMGVEALPE 353

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V  ARYN   N +        +S +F Q    E+    L   DI       + +DPPR 
Sbjct: 354 AVAQARYNAQFNGI--------ASAQFFQGT-VEQVLPTLPPADI-------VVLDPPRR 397

Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358
           G D   +  ++    P I+YISC+P +L RDL IL    ++ + +    D FP T H+E 
Sbjct: 398 GCDRQVLETLKLRRPPRIVYISCHPATLARDLQILLAEGSYRLTQWRAADFFPQTGHVEG 457

Query: 359 GVLLVR 364
              L R
Sbjct: 458 VAFLER 463


>gi|328885599|emb|CCA58838.1| RNA methyltransferase, TrmA family [Streptomyces venezuelae ATCC
           10712]
          Length = 442

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 31/206 (15%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R+  DER         YR     F Q +      ++  V+      +GD  L+LYCG G 
Sbjct: 254 RERADER--------TYRVGNGGFWQVHPKAAQTLMLAVMQGLTPRKGDTALDLYCGVGL 305

Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA        VL +E  K +VE AR+N+AA        VR+   +    + R    
Sbjct: 306 FAGALADRVGEKGAVLGIESGKRAVEDARHNLAA-----FPRVRIEQGKVESVLPR---- 356

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
             + ++D+       I +DPPR+G    TV  + +     I Y++C+P +L RD+S  + 
Sbjct: 357 TGITEVDL-------IVLDPPRAGAGKQTVHHLASLGARRIAYVACDPAALARDISYFAE 409

Query: 338 -THTIERLALFDQFPYTRHMECGVLL 362
             + +  L  FD FP T H+EC  +L
Sbjct: 410 RGYKVRTLRAFDLFPMTHHVECVAIL 435


>gi|313632848|gb|EFR99799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
           N1-067]
          Length = 453

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N+++N       ++E    
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLSNTTFETGKAEEVIPT 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ ILS   +    +   D FP T H+E   +L
Sbjct: 418 DMKILSDGGYEANLVQPVDMFPMTTHIEAVTVL 450


>gi|291514875|emb|CBK64085.1| 23S rRNA m(5)U-1939 methyltransferase [Alistipes shahii WAL 8301]
          Length = 469

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 16/159 (10%)

Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           GD+L +LY G G  +   A    RV+ VE    ++  A+ N   N + N        K  
Sbjct: 323 GDVLYDLYTGTGTIANFCAARCARVVGVEYVPEAIADAKVNSELNGIENTVFYAGDMKAV 382

Query: 270 TQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPD 326
                       L D  + +  R   I +DPPR+G+D+  + ++ +A P  I+Y+SCNP 
Sbjct: 383 ------------LDDGFVAANGRPDVIILDPPRAGVDEPVIEVILRAAPERIVYVSCNPA 430

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL ++   + +E +   D FP+T H+E  V LVR+
Sbjct: 431 TQARDLQLMDAAYRVEAVQPVDMFPHTHHVENVVKLVRR 469


>gi|86143081|ref|ZP_01061503.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217]
 gi|85830526|gb|EAQ48985.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217]
          Length = 457

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 26/213 (12%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNA--GINVHMLEWVLAATKGIQGD 212
           D  Y  + +  AGR  I+ ++E         SF Q N+     ++ +    A  KG +  
Sbjct: 255 DTIYDQDIICYAGRDHIFEEMEGLKFKINAKSFYQTNSEQAYELYKITRDFAELKGDE-T 313

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  +  +A+   +V+ VE    ++ AA+ N   N + NV+        +   
Sbjct: 314 VFDLYTGTGTIAQFVAKKAKKVIGVEAVPDAIIAAKENAQLNEIENVEF-------YVGD 366

Query: 273 MRREREFNRLKDIDIHSY-RFKTIFVDPPRSGL-DDATVGMVQ-AYPHILYISCNPDSLC 329
           M+     N   D  I  + +   +  DPPR G+  D    +++     I+Y+SCN  +  
Sbjct: 367 MK-----NVFNDAFIAQHGQPDVVITDPPRDGMHKDVVAQLIKIKADRIVYVSCNSATQA 421

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL++L   + +ER+   D FP T H+E  VLL
Sbjct: 422 RDLALLDPYYKVERVQPVDMFPQTHHVENVVLL 454


>gi|289167359|ref|YP_003445628.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6]
 gi|288906926|emb|CBJ21760.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6]
          Length = 440

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 293 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEVGTAEEIIPR 352

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 353 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 400

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + I  +   D FP+T   E  V L++K S
Sbjct: 401 DLVRLVEVYDIHYIQSVDMFPHTARTEAVVKLIKKVS 437


>gi|144898320|emb|CAM75184.1| RNA SAM-dependent methyltransferase, TrmA family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 441

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 18/183 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F QP       + + V      ++  + +LYCG G+F+  LA     V AVE  +  +
Sbjct: 275 GNFLQPTEAGEKAIAQLVCTGIGKVKA-VADLYCGCGSFTFPLAASGAAVHAVEGDEAPI 333

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A     AA ++  +KI    + E     RR      LK       +++ +  DPPR+G 
Sbjct: 334 RALE---AAANMAGLKI----TTETRDLARRPLLPQELK-------KYQAVVFDPPRAGA 379

Query: 305 DDATVGMVQAYPHILY-ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
                 + QA P I+  +SCNP +L RDL IL    + +E +   DQFP++ H+E  V +
Sbjct: 380 QSQAEYLAQAAPAIVVAVSCNPATLARDLQILVKGGYQVESITPIDQFPHSAHLEA-VAV 438

Query: 363 VRK 365
           +RK
Sbjct: 439 LRK 441


>gi|325690909|gb|EGD32909.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 456

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +G +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLGTIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVKLSQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|118497214|ref|YP_898264.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. novicida U112]
 gi|194323513|ref|ZP_03057290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. novicida FTE]
 gi|143581148|sp|A0Q5J5|RUMA_FRATN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|118423120|gb|ABK89510.1| RNA methyltransferase, trmA family [Francisella novicida U112]
 gi|194322368|gb|EDX19849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. novicida FTE]
          Length = 449

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  M++  +      + D +++L+CG GNF+L +++H   V+ VE     
Sbjct: 276 NDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTM 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A+     N++ NV      +    ++   +  FN        ++ +  + +DPPR+G
Sbjct: 336 VKRAKETADNNNITNVNFY---AANLFESFEDKEWFN--------NFEYNKMLLDPPRAG 384

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
             +    + +     I+Y+SC+  +L RD  IL  +  + +    + D FP+T H+E
Sbjct: 385 AQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNNKDYKLISAGVMDMFPHTMHVE 441


>gi|306825259|ref|ZP_07458601.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432695|gb|EFM35669.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 451

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N A N++ N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVALLVK 450


>gi|238784965|ref|ZP_04628964.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia bercovieri
           ATCC 43970]
 gi|238714180|gb|EEQ06193.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia bercovieri
           ATCC 43970]
          Length = 403

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 18/154 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    ++  +EI+  ++  AR +     + NV    + S  F  
Sbjct: 261 SMWDLFCGVGGFGLHCAGPETQLTGIEISAEAIACARQSADQLGLKNVNFAALDSTRFAT 320

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A   E +  +L            + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 321 A---EAQVPQL------------VLVNPPRRGIGAELCDYLTQMAPKFILYSSCNAETMA 365

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+S L+  H IER+ LFD FP+T H E  VLLV
Sbjct: 366 KDISRLADYH-IERVQLFDLFPHTAHYEVLVLLV 398


>gi|119509344|ref|ZP_01628493.1| 23S rRNA methyltransferase/RumA [Nodularia spumigena CCY9414]
 gi|119465958|gb|EAW46846.1| 23S rRNA methyltransferase/RumA [Nodularia spumigena CCY9414]
          Length = 468

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 21/169 (12%)

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V+ +   +QG   L++ YCG G  +L LA+   + + +E+   +V+ A  N   N +NNV
Sbjct: 297 VIQSELNLQGQELLIDAYCGMGTLTLPLAKQVRQAIGIELQPEAVQQAIVNAQHNDINNV 356

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH- 317
                + ++         E   + D+         + +DPPR G D A +  ++++ P  
Sbjct: 357 TFQVGAVEKLLP------EMGIVPDV---------VLLDPPRKGCDRAVIDSLLRSKPSR 401

Query: 318 ILYISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVR 364
           I+Y+SC   +L RDL +L     +TI R+   D FP T H+E    LVR
Sbjct: 402 IVYVSCKVATLARDLKLLCEDGQYTITRVQPADFFPQTAHVEAVAFLVR 450


>gi|319946766|ref|ZP_08021000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
           ATCC 700641]
 gi|319746814|gb|EFV99073.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
           ATCC 700641]
          Length = 452

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N A N++ N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 451


>gi|319787470|ref|YP_004146945.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465982|gb|ADV27714.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis
           11-1]
          Length = 449

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 187 FTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q NA +N  M+   L          +L+L+CG GNF+L LAR    V+ VE     V 
Sbjct: 280 FIQVNARLNEKMIARALEMLDTSPDHRVLDLFCGLGNFTLPLARQVREVVGVEGDPGLVA 339

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N   N + N    R  + + TQ  R                 F  + +DPPRSG +
Sbjct: 340 RARANAERNGLAN---ARFFAADLTQDQR---------GTPWMRQGFDRLLLDPPRSGAE 387

Query: 306 DATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLL 362
           +    + +Q    I+Y+SC+P SL RD   L     + +    + D FP+T H+E   L 
Sbjct: 388 EVLKQLPLQDIDRIVYVSCHPGSLARDAGFLVNERGYRLVSAGVMDMFPHTAHVESIALF 447

Query: 363 VR 364
            R
Sbjct: 448 ER 449


>gi|307704007|ref|ZP_07640940.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597]
 gi|307622431|gb|EFO01435.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597]
          Length = 451

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N+     +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNIHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVKVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|218134835|ref|ZP_03463639.1| hypothetical protein BACPEC_02738 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990220|gb|EEC56231.1| hypothetical protein BACPEC_02738 [Bacteroides pectinophilus ATCC
           43243]
          Length = 489

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 19/198 (9%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237
           YR    SF Q N      M + VL   + + G+  + +LYCG G  SL LA++  +V  V
Sbjct: 288 YRISPLSFYQVNPVQTKRMYDKVLEYAQ-LTGNEAVWDLYCGIGTISLFLAKNAKKVYGV 346

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT--- 294
           EI   ++E A  N A N+++N +     ++E          +    + D  S R      
Sbjct: 347 EIVPQAIEDAGNNAALNNIDNAQFFVGKAEEVVPEF-----YKNGGEGDTDSARSGADML 401

Query: 295 ----IFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--STTHTIERLAL 346
               I VDPPR G D + +  +   A P I+Y+SC+  +L RDL  L  S  + +  +  
Sbjct: 402 RPDVIVVDPPRKGCDTSLLDTMLEMAPPRIVYVSCDSATLARDLKYLRESGRYEVRDVQC 461

Query: 347 FDQFPYTRHMECGVLLVR 364
           +D F    H+E  V + R
Sbjct: 462 YDNFCQGVHVETVVWMSR 479


>gi|182624472|ref|ZP_02952255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens D str. JGS1721]
 gi|177910280|gb|EDT72661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens D str. JGS1721]
          Length = 455

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 17/158 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ + YCG G  +L L++   +V  VEI   +++ A  N   N V+NV+     S+    
Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVDNVEFFVGESEVV-- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L 
Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL+IL      T+E +   D FP T H+E  V L RK
Sbjct: 419 RDLAILEENGYKTLE-VQPVDMFPNTSHVETIVSLRRK 455


>gi|153949749|ref|YP_001401605.1| 23S rRNA methyluridine methyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|170024950|ref|YP_001721455.1| 23S rRNA methyluridine methyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|167012649|sp|A7FK27|RUMB_YERP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725418|sp|B1JRJ4|RUMB_YERPY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|152961244|gb|ABS48705.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia
           pseudotuberculosis IP 31758]
 gi|169751484|gb|ACA69002.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia
           pseudotuberculosis YPIII]
          Length = 376

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 18/154 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    ++  +EI+  ++  AR +     + NV    + S  F  
Sbjct: 236 SMWDLFCGVGGFGLHCAGPETQLTGIEISAEAIACARQSAEQLGLKNVSFAALDSTRFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A  +  E                + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 296 AEAQIPEL---------------VLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+S+L+  H IER+ LFD FP+T H E   LL 
Sbjct: 341 KDISLLAGYH-IERVQLFDMFPHTSHYEVLTLLA 373


>gi|188590211|ref|YP_001922461.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188500492|gb|ACD53628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 455

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  +L L++   +V  VEI +P++  A+ N   N+V+NV+     S+E    
Sbjct: 312 VFDAYCGTGTITLFLSQKAKKVYGVEIIEPAIINAKENAKLNNVDNVEFFVGKSEEVIPT 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           +  +              +   + VDPPR G D   +  ++      ++Y+SC+P +L R
Sbjct: 372 LIND------------GIKADIVVVDPPRKGCDIKLLEAIEKVKPKKVVYVSCDPSTLSR 419

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL IL    + +  +   D FP T H+E  V L++K
Sbjct: 420 DLKILDEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455


>gi|306822481|ref|ZP_07455859.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|309801408|ref|ZP_07695535.1| TRAM domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|304554026|gb|EFM41935.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|308221923|gb|EFO78208.1| TRAM domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 421

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 26/209 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           E++TVAGR   Y      F Q     P A  N H++  V     G Q   + +LY G+G 
Sbjct: 224 EKVTVAGRDFEYGVDAGGFWQMHRQAPIALTN-HVINLVRGELNGAQSACVWDLYSGSGL 282

Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+L LA       R+L+VE  K +V  A+ N+   H++NV +    + +  + +   R  
Sbjct: 283 FTLPLASLAAERTRMLSVEGGKTAVRNAQRNLRHVHLDNVDV---RAGDVAKTLVNVR-- 337

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
           N L   D+       + +DPPR+G      G +       ++YI+CNP SL RD + L+ 
Sbjct: 338 NDLARPDV-------VVLDPPRAGARAKVCGQIANSEARSVIYIACNPASLARDTATLAG 390

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  +  FD +P T H+E  V L RK
Sbjct: 391 LGYELADIHAFDIYPTTHHVET-VALFRK 418


>gi|51595706|ref|YP_069897.1| 23S rRNA methyluridine methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186894780|ref|YP_001871892.1| 23S rRNA methyluridine methyltransferase [Yersinia
           pseudotuberculosis PB1/+]
 gi|116256324|sp|Q66CN7|RUMB_YERPS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725416|sp|B2K9X0|RUMB_YERPB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|51588988|emb|CAH20606.1| putative RNA methyltransferase [Yersinia pseudotuberculosis IP
           32953]
 gi|186697806|gb|ACC88435.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia
           pseudotuberculosis PB1/+]
          Length = 376

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 18/154 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    ++  +EI+  ++  AR +     + NV    + S  F  
Sbjct: 236 SMWDLFCGVGGFGLHCAGPETQLTGIEISAEAIACARQSAEQLGLKNVSFAALDSTRFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A  +  E                + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 296 AEAQIPEL---------------VLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+S+L+  H IER+ LFD FP+T H E   LL 
Sbjct: 341 KDISLLAGYH-IERVQLFDMFPHTSHYEVLTLLA 373


>gi|315605794|ref|ZP_07880826.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312492|gb|EFU60577.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 387

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/205 (31%), Positives = 94/205 (45%), Gaps = 29/205 (14%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLE----WV-LAATKG-IQGDLLELYCGNGNFS 224
           LTV G  L  R    SF Q NA +   + E    W  L    G +   L +LYCG G F+
Sbjct: 198 LTVEGLALGPR----SFAQTNARVAAALYEQASRWARLPLPDGRVPEGLWDLYCGVGGFA 253

Query: 225 LVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVK--IVRMSSKEFTQAMRREREFNR 281
           L  AR     V  VE++  ++ +A   I A     ++    R    + T A  R +  + 
Sbjct: 254 LACARGGIPHVTGVEVSAGAISSA---ITAARTAGLRRDEARFICDDAT-AWARAQPAST 309

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
           + D+         I V+PPR G+       +     P ++Y SCNP SL +DL+++    
Sbjct: 310 VPDV---------IVVNPPRRGIGPDLAAYLNECGAPRVIYSSCNPASLAQDLTVMPALR 360

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +E   +FD FP+T H+E  VLL R
Sbjct: 361 PVEGR-VFDMFPHTSHVEAAVLLER 384


>gi|219871135|ref|YP_002475510.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219691339|gb|ACL32562.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 436

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 16/144 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271
           +L+L+CG GNF+L +A   + V+ +E  +P V  A+ N   N +NN K  +    K F  
Sbjct: 297 VLDLFCGMGNFTLPIAPFVEEVVGIEGVEPMVAQAKQNAQTNQINNAKFYQTDLDKPFVD 356

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCR 330
               +  FN+               +DP R+G   A   + +  P  I+Y+SCNP +L R
Sbjct: 357 QPWAKAYFNK-------------ALLDPARNGAYFALDHLCELQPERIVYVSCNPATLVR 403

Query: 331 DL-SILSTTHTIERLALFDQFPYT 353
           D   +++  + + + A+ D FP+T
Sbjct: 404 DAEKLIAKGYRLSQSAMIDMFPHT 427


>gi|254447150|ref|ZP_05060617.1| 23S rRNA (uracil-5-)-methyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263289|gb|EDY87567.1| 23S rRNA (uracil-5-)-methyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 452

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 22/187 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F+Q N G+N  M+   +       G  +L+ +CG GNFSL LA    +VL +E +   
Sbjct: 281 GEFSQANRGLNREMVRTAVEQLHVPPGAHVLDAFCGVGNFSLALANGGAKVLGLEGSDNM 340

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI---FVDPP 300
           VE AR+N   N     +   M               N +    I  +    I    +DPP
Sbjct: 341 VEKARHNARDNGFELCEFKTM---------------NLMHSDGIGRHTLDGIHHALLDPP 385

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
           R G  +    + +      +LYISCNP +  RD   +++   T++ + L+D FP+T H E
Sbjct: 386 RDGASELCQRLAREPELQRVLYISCNPATFSRDAEHLVNGGFTLDTVQLWDLFPHTHHSE 445

Query: 358 CGVLLVR 364
              L VR
Sbjct: 446 VMGLFVR 452


>gi|153806599|ref|ZP_01959267.1| hypothetical protein BACCAC_00869 [Bacteroides caccae ATCC 43185]
 gi|149131276|gb|EDM22482.1| hypothetical protein BACCAC_00869 [Bacteroides caccae ATCC 43185]
          Length = 456

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+    + L  V     G+ G+ L  +LY G G  +  ++R   +V+ +E    +
Sbjct: 285 SFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIANFVSRRARQVIGIEYVPEA 343

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N + N        K+        +EF     I+ H  R   I  DPPR+G
Sbjct: 344 IEDAKVNAEINDIKNTLFYAGDMKDILT-----QEF-----INEHG-RPDVIITDPPRAG 392

Query: 304 LDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +    V ++  A P  I+Y+SCNP +  RDL +L   + ++ +   D FP+T H+E  VL
Sbjct: 393 MHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKVKAVQPVDMFPHTHHVENVVL 452

Query: 362 L 362
           L
Sbjct: 453 L 453


>gi|37200429|dbj|BAC96255.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016]
          Length = 397

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 29/209 (13%)

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYC 218
           D  Y+ E     G  ++ R    SF Q N  +   +     +WV A  K  Q  + +L+C
Sbjct: 212 DAHYLLEEFN--GVPMVVR--PKSFFQTNPHVAAQLYATARDWV-AELKPRQ--MWDLFC 264

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G F+L  A H ++V+ +EI + ++ +A+ +     + N++   + S  ++QA  +  +
Sbjct: 265 GVGGFALHCAPHAEQVIGIEIEEEAINSAKLSAQQLGIGNLRFSALDSAAYSQAQTQAAD 324

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                           I V+PPR GL  A    ++  A  +++Y SCNP ++ +DL+ L 
Sbjct: 325 L---------------ILVNPPRRGLGQALSEQLEQLAPQYLIYSSCNPVTMQQDLAHLP 369

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
            ++ +ER   FD FP+T H E  +LLVR+
Sbjct: 370 -SYQVERAQWFDMFPHTDHAEVMMLLVRQ 397


>gi|171742570|ref|ZP_02918377.1| hypothetical protein BIFDEN_01683 [Bifidobacterium dentium ATCC
           27678]
 gi|283456344|ref|YP_003360908.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium dentium Bd1]
 gi|171278184|gb|EDT45845.1| hypothetical protein BIFDEN_01683 [Bifidobacterium dentium ATCC
           27678]
 gi|283102978|gb|ADB10084.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium dentium Bd1]
          Length = 421

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 26/209 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           E++TVAGR   Y      F Q     P A  N H+++ V     G Q   + +LY G+G 
Sbjct: 224 EKVTVAGRDFEYGVDAGGFWQMHRQAPIALTN-HVIDLVRRELNGAQSACVWDLYSGSGL 282

Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+L LA       R+L+VE  K +V  A+ N+   H++NV +    + +  + +   R  
Sbjct: 283 FTLPLASLAAERTRMLSVEGGKTAVRNAQRNLRHVHLDNVDV---RAGDVAKTLGNVR-- 337

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
           N L   D+       + +DPPR+G      G +       ++YI+CNP SL RD + L+ 
Sbjct: 338 NDLARPDV-------VVLDPPRAGARAKVCGQIADSEARSVIYIACNPASLARDTATLAG 390

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  +  FD +P T H+E  V L RK
Sbjct: 391 LGYELADIHAFDIYPTTHHVET-VALFRK 418


>gi|139473396|ref|YP_001128112.1| RNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|134271643|emb|CAM29874.1| putative RNA methyltransferase [Streptococcus pyogenes str.
           Manfredo]
          Length = 451

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 155/382 (40%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   G  +   +
Sbjct: 89  YPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSFGGTVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL----TSQSD 115
           F Q +   + ID  +    L   ++    +++   +L      K+  I  +       SD
Sbjct: 149 FSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIMVRKAQASD 208

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRDYVDERLTVA 174
           Q  + ++  + +  A      R    L     Q++ +   +N +K      Y DE   + 
Sbjct: 209 QVQIIVVSSKEVRLA------RFIGELTKAFPQVKTVALNSNCSK--SSEIYGDETEILW 260

Query: 175 GRTLIYRQI--------ENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           G+  I+ ++          +F Q N     V   E V A   G +  +++ YCG G+   
Sbjct: 261 GQEAIHEEVLDYGFALSPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVGSIGF 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   ++E A+ N  +   +N          + +A + E    +    
Sbjct: 321 AFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNA---------YYEAGKAEDIIPKWYK- 370

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
               YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  + +  
Sbjct: 371 --QGYRADAIIVDPPRTGLDDKLLETILHYQPKQMVYVSCNTSTLARDLVQLTKIYDVHY 428

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L ++
Sbjct: 429 IQSVDMFPHTARTEAVVKLQKR 450


>gi|322372299|ref|ZP_08046835.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C150]
 gi|321277341|gb|EFX54410.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C150]
          Length = 452

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L++ YCG G   L  A     +  ++I   +++ AR N  A  + N       +++   
Sbjct: 308 NLIDAYCGVGTIGLAFANKVKDIRGMDIIPEAIDDARKNAEALGLENYHYEVGKAEDIIP 367

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
              +E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L 
Sbjct: 368 RWYKE------------GYRADALIVDPPRTGLDDKLLQTILEYVPEKMVYVSCNVSTLS 415

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL  L+  + +  +   D FP+T   E  V L RK
Sbjct: 416 RDLVSLTQAYEVNYIQSVDMFPHTARTEAVVKLTRK 451


>gi|163782302|ref|ZP_02177300.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882335|gb|EDP75841.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 425

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 104/211 (49%), Gaps = 21/211 (9%)

Query: 152 IGRANKTKICLDRDY--VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           +G  ++ +  L+R +    E L V   +  +R   +SF Q N  I    +E V +  K  
Sbjct: 222 VGDYSRLRTILNRRFWIGKEYLFVEVSSWKFRVSADSFFQVNWTIWKSFIEAV-SDVKSY 280

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +   ++L+CG G F++ L+   + +   +    ++  A YN   N  +NV  V M S  +
Sbjct: 281 R-KAIDLHCGVGFFTIPLSEKGNFIEGSDSNPSAINDAEYNAKLNGRDNV--VFMRSDAY 337

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDS 327
                R  E   L            + +DPPRSGL+   + + V+  P +I+Y+SCNP +
Sbjct: 338 RHLKSRGGEVLDL------------VVLDPPRSGLEKNEMELLVKNKPENIVYVSCNPST 385

Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHME 357
           L RDL ++L   +T+E++ L D FP T H+E
Sbjct: 386 LARDLKTLLRNGYTLEKIRLVDMFPQTYHIE 416


>gi|306818800|ref|ZP_07452522.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304648486|gb|EFM45789.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 414

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 90/205 (43%), Gaps = 16/205 (7%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
           V E + V  R   YR   +SF Q +      ++  +LA    I   ++LELY G+G FS+
Sbjct: 219 VREVVRVGAREHTYRIFASSFWQTDYRAPAVLVGELLAGVGDISDFEVLELYSGSGLFSV 278

Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            LA       R+  VE    +V++A YN+       V + R S             F R 
Sbjct: 279 FLAEAVGAAGRLTTVEGDALAVKSAGYNLKHAGFVGVSVERASVSA---------RFLRG 329

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTH 339
            D      R   +  DPPRSGL     G +       +  ISC+P S  RDL  L    +
Sbjct: 330 VDFGQRVSRGTLVVADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGY 389

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            ++   +FD FPYT+H+E   +L R
Sbjct: 390 RLQSFRVFDLFPYTQHVEVLSVLGR 414


>gi|317127193|ref|YP_004093475.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
           2522]
 gi|315472141|gb|ADU28744.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
           2522]
          Length = 457

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 27/168 (16%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  +++ YCG G  SL LA+    V  VEI   ++  A+ N   N + NV      
Sbjct: 306 GLSGNETVIDAYCGIGTISLFLAQRAKHVYGVEIVPEAISDAKKNAQLNGIENVDFAVGE 365

Query: 266 SKE-----FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HI 318
           +++     + Q +R +                  I VDPPR G D+  +  +V+  P  +
Sbjct: 366 AEKVMPWWYAQGIRAD-----------------VIVVDPPRKGCDEELLETIVKMKPARV 408

Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +Y+SCNP +L RDL  L    +  + +   D FP+T H+E   ++ R+
Sbjct: 409 VYVSCNPATLARDLKYLEGRGYKTKEVQPVDMFPHTMHVETVTVIYRE 456


>gi|206577069|ref|YP_002239492.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae
           342]
 gi|206566127|gb|ACI07903.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae
           342]
          Length = 375

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A    +Q  + +L+CG G F L  A    R+  +EIA
Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPAMRLTGIEIA 263

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR + A   ++N+    + S +F              + DI     + + V+PP
Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT-----------HEADIP----QLVLVNPP 308

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+       +   A P+I+Y SCN  ++  D++ L   + +ER+ LFD FP+T H E 
Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLR-GYRVERVQLFDMFPHTAHYEV 367

Query: 359 GVLLVRK 365
             LLVR+
Sbjct: 368 LTLLVRE 374


>gi|56418964|ref|YP_146282.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56378806|dbj|BAD74714.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 462

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 21/208 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGD 212
            ++T++    +Y+ E L      L +     +F Q N    V + + V   AA  G +  
Sbjct: 264 GDETEVLAGDEYIQETLG----DLSFELSARAFFQLNPLQTVKLYDEVKKAAALTGTE-R 318

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LAR    V  ++    ++E A+ N   +   N   V   ++ +   
Sbjct: 319 IVDAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAEYWLPK 378

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
             +E             ++   I VDPPR G D A +  ++   P  ++Y+SCNP SL R
Sbjct: 379 WVKE------------GWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLAR 426

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           DL  L+  + I+ +   D FP+T H+E 
Sbjct: 427 DLDALAAQYRIDYIQPVDMFPHTAHVEA 454


>gi|333030806|ref|ZP_08458867.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM
           18011]
 gi|332741403|gb|EGJ71885.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM
           18011]
          Length = 475

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271
           + +LY G G  +  +++   +V+ +E    ++E A+ N   NH++N        K+  TQ
Sbjct: 331 VYDLYTGTGTIANFVSKQAKKVIGIEYVPEAIEDAKINSEINHIDNTLFYAGDMKDILTQ 390

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329
                        I+ H  +   I  DPPR+G+  D    ++ A P  I+Y+SCNP +  
Sbjct: 391 DF-----------INTHG-QPDVIITDPPRAGMHQDVIDVLLFAEPKRIVYVSCNPATQA 438

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +L   + +  +   D FP+T H+E  VLL ++
Sbjct: 439 RDLQLLDNKYKVAAIQPVDMFPHTHHVENVVLLEKR 474


>gi|322391885|ref|ZP_08065350.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321145365|gb|EFX40761.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 451

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKDVYGVEVIPEAVENSQKNASINGITNAHYVADSAE----- 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                  N +     +  +   I VDPPR GL ++ +   V   P  I Y+SCNP ++ R
Sbjct: 363 -------NAMTKWSKNGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+E   LLV++
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVKE 451


>gi|298385356|ref|ZP_06994914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           1_1_14]
 gi|298261497|gb|EFI04363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           1_1_14]
          Length = 472

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 186 SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+    N++ +    A   G +  + +LY G G  +  ++R   +V+ +E    +
Sbjct: 301 SFYQTNSEQAYNLYKIAREFAGLTGKEL-VYDLYTGTGTIANFVSRQARQVIGIEYVPEA 359

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N + N        K+        +EF     I+ H  R   I  DPPR+G
Sbjct: 360 IEDAKVNAKINEIKNALFYAGDMKDMLT-----QEF-----INQHG-RPDVIITDPPRAG 408

Query: 304 LDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +    V ++  A P  I+Y+SCNP +  RDL +L   + ++ +   D FP+T H+E  VL
Sbjct: 409 MHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVL 468

Query: 362 L 362
           L
Sbjct: 469 L 469


>gi|302345320|ref|YP_003813673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
           melaninogenica ATCC 25845]
 gi|302149971|gb|ADK96233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
           melaninogenica ATCC 25845]
          Length = 474

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N     H+   V      + G+ L  +LY G G  +  +A+   +V+ +E    +
Sbjct: 303 SFYQTNTEQAYHLYS-VAREFANLTGNELVYDLYTGTGTIANFVAKKAQKVIGIEYVPEA 361

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N ++N        K+              +D      R   I  DPPR+G
Sbjct: 362 IEDAKVNSEVNKIDNTLFYAGDMKDILT-----------EDFISEHGRPDVIITDPPRAG 410

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +    V ++  A P  I+Y+SCNP +  RDL++L   + +  +   D FP+T H+E  VL
Sbjct: 411 MHPDVVNVILGASPKRIVYVSCNPATQARDLALLDADYKVSAVQPVDMFPHTPHVENVVL 470

Query: 362 LVRK 365
           L ++
Sbjct: 471 LEKR 474


>gi|305666421|ref|YP_003862708.1| putative RNA methyltransferase [Maribacter sp. HTCC2170]
 gi|88708684|gb|EAR00919.1| putative RNA methyltransferase [Maribacter sp. HTCC2170]
          Length = 469

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 24/214 (11%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +  AGR  I  ++E         SF Q N+    + L  V     GI G+ L
Sbjct: 267 DTIYDQEIVCFAGRDHIIEEMEGLQFKINAKSFYQTNSE-QAYELYKVARDFAGITGNEL 325

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             +LY G G  +  +++   +V+ +E    ++E A+ N A N ++NV       K     
Sbjct: 326 VYDLYTGTGTIAQFVSKKAKKVIGIESVPEAIEDAKANAANNKIDNVDFFVGDMKN---- 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           +  E   N     DI       I  DPPR G+    V  +       ++Y+SCN  +  R
Sbjct: 382 VFNEDFINAHGSPDI-------IITDPPRDGMHKDVVQQLLNIGAKKVVYVSCNSATQAR 434

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL+++   + + ++   D FP T H+E  VLL +
Sbjct: 435 DLALMKHMYKVSKVQAVDMFPQTHHVENVVLLEK 468


>gi|260912576|ref|ZP_05919108.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633341|gb|EEX51499.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 502

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 22/187 (11%)

Query: 186 SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N     H+ +     A+  G +  + +LY G G  +  +AR   +V+ VE    +
Sbjct: 330 SFYQTNTQQAYHLYDVARRFASLSGTE-TVYDLYTGTGTIANFVARQAKKVVGVEYVPEA 388

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF---NRLKDIDIHSYRFKTIFVDPP 300
           +E A+ N   N ++N        K+         EF   N   D+         I  DPP
Sbjct: 389 IEDAKVNSELNGISNTTFYAGDMKDILN-----DEFIANNGQPDV---------IITDPP 434

Query: 301 RSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R+G+  D    +++A P  I+Y+SCNP +  RDL  L   + +  +   D FP+T H+E 
Sbjct: 435 RAGMHADVIETIIRANPQRIVYVSCNPATQARDLIALDERYAVTAVQPVDMFPHTPHVEN 494

Query: 359 GVLLVRK 365
            VLL R+
Sbjct: 495 VVLLERR 501


>gi|260174511|ref|ZP_05760923.1| RNA methyltransferase [Bacteroides sp. D2]
          Length = 456

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G  +
Sbjct: 266 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIA 324

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             ++R   +V+ +E    ++E A+ N   N + N        K+  TQ            
Sbjct: 325 NFVSRQARQVIGIEYVPEAIEDAKINAEINDIKNALFYAGDMKDILTQDF---------- 374

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341
            I+ H  R   I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L   + +
Sbjct: 375 -INQHG-RPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 432

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           + +   D FP+T H+E  VLL
Sbjct: 433 KAIQPVDMFPHTHHVENVVLL 453


>gi|253579594|ref|ZP_04856863.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849095|gb|EES77056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 545

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 15/161 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  + +LYCG G  SL LA+    V  VEI   ++E A+ N   N + N +     ++E 
Sbjct: 306 QETVWDLYCGIGTISLFLAQKAKFVRGVEIVPAAIENAKENAKLNGLENTEFFVGKAEEV 365

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDS 327
                  RE+ +      +      I VDPPR G D+  +  MV+  P  I+Y+SC+  +
Sbjct: 366 LP-----REYKK------NGVYADVIVVDPPRKGCDETLLETMVEMNPDRIVYVSCDSAT 414

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV-RKP 366
           L RDL  L    + + ++   DQF  T H+E  VLL  +KP
Sbjct: 415 LARDLKYLCERGYELRKVCPVDQFGMTVHVETVVLLSQQKP 455


>gi|253568537|ref|ZP_04845948.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842610|gb|EES70690.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 472

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 186 SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+    N++ +    A   G +  + +LY G G  +  ++R   +V+ +E    +
Sbjct: 301 SFYQTNSEQAYNLYKIAREFAGLTGKEL-VYDLYTGTGTIANFVSRQARQVIGIEYVPEA 359

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N + N        K+        +EF     I+ H  R   I  DPPR+G
Sbjct: 360 IEDAKVNAEINEIKNALFYAGDMKDMLT-----QEF-----INQHG-RPDVIITDPPRAG 408

Query: 304 LDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +    V ++  A P  I+Y+SCNP +  RDL +L   + ++ +   D FP+T H+E  VL
Sbjct: 409 MHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVL 468

Query: 362 L 362
           L
Sbjct: 469 L 469


>gi|228473017|ref|ZP_04057774.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275599|gb|EEK14376.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
          Length = 469

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 28/217 (12%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +   GR  IY ++E         SF Q N+    + L  V+     + G+ L
Sbjct: 267 DTIYDQEVICYHGRNFIYEEMEGLRFKINAKSFFQTNS-TQAYELYKVVRDFAALTGEEL 325

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             +LY G G  +  +A+   +V+ VE    ++  A+ N   N ++NV         F   
Sbjct: 326 VYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKENAQNNQISNVDF-------FVGD 378

Query: 273 MRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328
           M+     EF     I  H      I  DPPR G+    V  +   A   ++Y+SCN  + 
Sbjct: 379 MKNVFNEEF-----ITTHGLP-DVIITDPPRDGMHKDVVAQILRIAPKRVVYVSCNSATQ 432

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL++L   + + R+   D FP T H+E   LL  K
Sbjct: 433 ARDLALLQEKYKVVRICPVDMFPQTYHIENIALLEAK 469


>gi|329726919|gb|EGG63377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis VCU144]
          Length = 456

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A  N   N + N              
Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 359

Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326
                E+ + +D+ +       +   + VDPPR G D+     +++  P  I+YISCNP 
Sbjct: 360 -----EYGKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 414

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD  IL+  + +  +   D FP T H+E   L VRK
Sbjct: 415 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453


>gi|163750002|ref|ZP_02157246.1| RNA methyltransferase, TrmA family protein [Shewanella benthica
           KT99]
 gi|161330276|gb|EDQ01257.1| RNA methyltransferase, TrmA family protein [Shewanella benthica
           KT99]
          Length = 462

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 109/238 (45%), Gaps = 40/238 (16%)

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN---------SFTQPNAGI 194
           A  + + LI + N   + L  D   + L +    L Y +++N         SF Q NA I
Sbjct: 243 ALSHGVSLIVQGNDADLTLICD-TPKMLDLDSDELPYYELDNGVKLSFTPGSFVQVNAEI 301

Query: 195 NVHML----EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           N  M+    +W+      ++ +  +L+L+CG GNFSL LA     V+ VE     V+ AR
Sbjct: 302 NNAMVNQAVDWL-----SVEANERVLDLFCGVGNFSLPLANKGAEVIGVEGVPEMVQQAR 356

Query: 249 YNIAANHVNNVKI--VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            N   + ++ V      +S+   TQ+         L  +D        + +DP R+G  +
Sbjct: 357 MNATLSGLDKVSFFHTDLSADLSTQSW--------LGKVD-------KLLLDPARAGAFE 401

Query: 307 ATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +   + +  P  I+Y+SC+P SL RD   +L   + + +L L D FP T H+E   L 
Sbjct: 402 SLQWLKKMKPKSIVYVSCDPASLARDSECLLKHGYKLTKLGLIDMFPQTHHIEAMALF 459


>gi|19310570|gb|AAL85018.1| unknown protein [Arabidopsis thaliana]
          Length = 564

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 88/214 (41%), Gaps = 32/214 (14%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           Y  + +T   R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG G
Sbjct: 363 YGKDTITEVLRGLTFQISANSFFQTNTH-QAEVLYKLIEESAGLKGDGSEVVLDLFCGTG 421

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LAR    V   E+   ++  A  N   N + N   ++    +  +        N 
Sbjct: 422 TIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFG-----NN 476

Query: 282 LKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339
               DI       +  DP R G  +      +    P I+Y+SCNP +  RDL  L   H
Sbjct: 477 FPKPDI-------VISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYL--CH 527

Query: 340 TIERLAL-----------FDQFPYTRHMECGVLL 362
            +E   L            D FP+T H+EC  LL
Sbjct: 528 GVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLL 561


>gi|315660149|ref|ZP_07913006.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis
           M23590]
 gi|315494830|gb|EFU83168.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis
           M23590]
          Length = 456

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ AR N   N ++N   V   +++    
Sbjct: 311 VLDTYCGIGTIGLYIAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMD 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            +RE              +   + VDPPR G +   +  ++   P  I+YISCNP +  R
Sbjct: 371 WQRE------------GIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D  +L+T + ++ +   D FP T H+E   L  +K
Sbjct: 419 DAHMLATQYDLKEITPVDMFPQTTHIETVALFKKK 453


>gi|304310588|ref|YP_003810186.1| 23S rRNA (Uracil-5-)-methyltransferase [gamma proteobacterium HdN1]
 gi|301796321|emb|CBL44529.1| 23S rRNA (Uracil-5-)-methyltransferase [gamma proteobacterium HdN1]
          Length = 444

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 21/177 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  M+   +        + +L+L+CG GNF+L LAR  D V+ VE +   V+
Sbjct: 274 FTQVNPYINEKMVSRAVELLAPEPSERVLDLFCGLGNFTLPLARRADVVVGVEGSDALVQ 333

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDPPRS 302
             R N   N + NV        EF  A       +  K ++  ++    F  I +DPPRS
Sbjct: 334 RGRENALHNGLQNV--------EFYGA-------DLTKPLEHQAWAHDGFAKILIDPPRS 378

Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357
           G  +    +    P  I+Y+SC+P +L RD + L+   + +    + D FP+T H+E
Sbjct: 379 GALELVQKITVFKPKRIVYVSCDPATLARDAAELARQGYRLVVAGVMDMFPHTTHVE 435


>gi|188995054|ref|YP_001929306.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277]
 gi|188594734|dbj|BAG33709.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277]
          Length = 478

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 22/207 (10%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221
           R+Y++E +      L ++    SF Q N+    + L  +     G+ GD L  +LY G G
Sbjct: 285 REYIEEEM----EGLKFKIGAKSFYQTNSR-QAYQLYRIAREFAGLTGDELVYDLYTGTG 339

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  +A    RV+ +E    ++E AR N   N + N        K+         +F  
Sbjct: 340 TIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFYAGDMKDILT-----NDF-- 392

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--ST 337
              I+ H  R   +  DPPR+G+ ++ +  +   A   I+Y+SCNP +  RDL++L    
Sbjct: 393 ---IEQHG-RPDVVITDPPRAGMHESVIDAILFAAPKRIVYVSCNPATQARDLALLMADG 448

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +   +    D FP+T H+E  VLLVR
Sbjct: 449 RYRAVKSRPVDMFPHTHHVENVVLLVR 475


>gi|161486689|ref|NP_936285.2| 23S rRNA methyluridine methyltransferase [Vibrio vulnificus YJ016]
 gi|50401484|sp|Q7MFU0|RUMB_VIBVY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
          Length = 376

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 29/209 (13%)

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYC 218
           D  Y+ E     G  ++ R    SF Q N  +   +     +WV A  K  Q  + +L+C
Sbjct: 191 DAHYLLEEFN--GVPMVVR--PKSFFQTNPHVAAQLYATARDWV-AELKPRQ--MWDLFC 243

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G F+L  A H ++V+ +EI + ++ +A+ +     + N++   + S  ++QA  +  +
Sbjct: 244 GVGGFALHCAPHAEQVIGIEIEEEAINSAKLSAQQLGIGNLRFSALDSAAYSQAQTQAAD 303

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                           I V+PPR GL  A    ++  A  +++Y SCNP ++ +DL+ L 
Sbjct: 304 L---------------ILVNPPRRGLGQALSEQLEQLAPQYLIYSSCNPVTMQQDLAHLP 348

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
            ++ +ER   FD FP+T H E  +LLVR+
Sbjct: 349 -SYQVERAQWFDMFPHTDHAEVMMLLVRQ 376


>gi|42565079|ref|NP_188767.2| RNA methyltransferase family protein [Arabidopsis thaliana]
 gi|9280234|dbj|BAB01724.1| RNA methyltransferase-like protein [Arabidopsis thaliana]
 gi|332642969|gb|AEE76490.1| RNA methyltransferase family protein [Arabidopsis thaliana]
          Length = 554

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 88/214 (41%), Gaps = 32/214 (14%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           Y  + +T   R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG G
Sbjct: 353 YGKDTITEVLRGLTFQISANSFFQTNTH-QAEVLYKLIEESAGLKGDGSEVVLDLFCGTG 411

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LAR    V   E+   ++  A  N   N + N   ++    +  +        N 
Sbjct: 412 TIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFG-----NN 466

Query: 282 LKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339
               DI       +  DP R G  +      +    P I+Y+SCNP +  RDL  L   H
Sbjct: 467 FPKPDI-------VISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYL--CH 517

Query: 340 TIERLAL-----------FDQFPYTRHMECGVLL 362
            +E   L            D FP+T H+EC  LL
Sbjct: 518 GVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLL 551


>gi|332359419|gb|EGJ37239.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 469

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H  +V  +E+   +VE +R N   N + N   V   ++E  Q 
Sbjct: 321 VIDAYSGIGTIGLSVAKHVKQVYGMEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328
                  N LK+      +   I VDPPR GL +    A+V M    P I YISCN  ++
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASVSM--EPPKITYISCNVATM 426

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +     + ++++   D FP T H+E    LVR
Sbjct: 427 ARDIKLYQELGYELKKVQPVDLFPQTHHVEAVSQLVR 463


>gi|237653665|ref|YP_002889979.1| 23S rRNA 5-methyluridine methyltransferase [Thauera sp. MZ1T]
 gi|237624912|gb|ACR01602.1| RNA methyltransferase, TrmA family [Thauera sp. MZ1T]
          Length = 441

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ NA IN  ++   +       G+ + +L+CG GNFSL +AR    V+ VE ++  VE
Sbjct: 261 FTQVNADINRLLIRRSMQLLDPRPGERIADLFCGLGNFSLPIARLGAEVVGVEGSEALVE 320

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N A N +        +  EF  A   E   + L  +     R   + +DPPR G  
Sbjct: 321 RAHANAARNGL-------AARCEFHAANLFETTEDSLAALG----RLDKLLIDPPREG-- 367

Query: 306 DATVGMVQAY------PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
              + +V+A         I+Y+SCNP +L RD ++L     + +    + + FP T H+E
Sbjct: 368 --AIAVVKAIDPSRGPSRIVYVSCNPATLARDAAVLVHEKGYRLAAAGIANMFPQTSHVE 425

Query: 358 CGVLLVRKPS 367
              L  R P 
Sbjct: 426 SVALFERTPG 435


>gi|225568809|ref|ZP_03777834.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM
           15053]
 gi|225162308|gb|EEG74927.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM
           15053]
          Length = 460

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 18/156 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + +LA    RV+ VEI + +V AA+ N   N ++N              
Sbjct: 317 IFDLYSGTGTIAQILAPVAKRVVGVEIVEEAVAAAKENAKLNGLDNCTFWS------GDV 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           ++   E   + D+         I +DPPR G+    +  +  +    ++YI+C P SL R
Sbjct: 371 LKVIDELGEVPDL---------IVIDPPRDGVHPKALEKITNFGVERMVYIACKPTSLAR 421

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L    + +ER+   D FP T H+E  VLL  K
Sbjct: 422 DLEMLQGRGYEVERMGCVDLFPGTVHVETVVLLSHK 457


>gi|301109485|ref|XP_002903823.1| tRNA (uracil-5-)-methyltransferase [Phytophthora infestans T30-4]
 gi|262096826|gb|EEY54878.1| tRNA (uracil-5-)-methyltransferase [Phytophthora infestans T30-4]
          Length = 815

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 18/158 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L ++ CG G   +  +    +V+ +EI KP+ + A+ N   N+V NV  V   +++  ++
Sbjct: 653 LYDVCCGTGTIGICASEGVGKVVGIEICKPATDDAQVNAILNNVQNVSFVNSKAEDVMKS 712

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNP-DSL 328
           + +++     K    H  R   I VDPPR+GL    +  ++A P    I+Y+SCNP +SL
Sbjct: 713 LLQKKRDESEK----HLNRVVAI-VDPPRAGLHHNVLRALRACPPVERIVYVSCNPTNSL 767

Query: 329 CRDLSIL--STTHTIERLAL-------FDQFPYTRHME 357
            RD   L   +T +++  A         D FP+T H E
Sbjct: 768 VRDAVTLCGPSTKSLQGQAFEPVHAVPVDMFPHTPHCE 805


>gi|254829496|ref|ZP_05234183.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258601911|gb|EEW15236.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
          Length = 453

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   +
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPS 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           D+ +L+   +  +++   D FP T H+E   +L
Sbjct: 418 DMKLLTDGGYVAKKVQPVDMFPMTTHIEAVTVL 450


>gi|126274016|ref|XP_001387373.1| tRNA(m5U54)methyltransferase [Scheffersomyces stipitis CBS 6054]
 gi|126213243|gb|EAZ63350.1| tRNA(m5U54)methyltransferase [Pichia stipitis CBS 6054]
          Length = 560

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 31/223 (13%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGD- 212
           KT +   R  V E   V G T  +   E  F Q N  I   +  +V   LA     +G+ 
Sbjct: 354 KTCVTKSRQIVTEY--VNGYTFEFSAGE--FFQNNNSILPAVTNYVKSNLAIPNSKEGEP 409

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             L++ YCG+G FS+  + +  +V+ VE++  SV+ A  N   N++ N   +   +++  
Sbjct: 410 NYLVDAYCGSGLFSITCSDNVSKVIGVEVSADSVKFAERNAKNNNIENALFLVGKAEQI- 468

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
                         ID  S R  ++ +DPPR G D+  +  +  Y    I+YISCN  S 
Sbjct: 469 -----------FGSIDTPSNR-TSVILDPPRKGCDEVFLNQLSDYHPAKIVYISCNVHSQ 516

Query: 329 CRDLS-ILSTTHT-----IERLALFDQFPYTRHMECGVLLVRK 365
            RD+   ++ T       +E +  FD FP T H+E   +L  K
Sbjct: 517 ARDVEWFINNTENGKDYYVESIKGFDFFPQTHHVESVAVLALK 559


>gi|319646952|ref|ZP_08001180.1| YfjO protein [Bacillus sp. BT1B_CT2]
 gi|317391011|gb|EFV71810.1| YfjO protein [Bacillus sp. BT1B_CT2]
          Length = 463

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N    V + + V  A K + G   +++ YCG G   + +A     +  +++ K S
Sbjct: 293 AFFQLNPIQTVKLYDEVKKAAK-LTGREKVVDAYCGVGTIGMWIADGAKEIRGMDVIKES 351

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++ A  N   + + N + V  +++ +     +E             +R   + VDPPR+G
Sbjct: 352 IDDANQNAKKHGIENARYVTGTAEHWLPKWTKE------------GFRPDVVIVDPPRTG 399

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
            D   +  + Q  P   +Y+SCNP +L +DL  L+  + +E +   D FP T H+E  V 
Sbjct: 400 CDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKDYHVEYIQPVDMFPQTAHVESVVS 459

Query: 362 L 362
           L
Sbjct: 460 L 460


>gi|110803163|ref|YP_697677.1| RNA methyltransferase [Clostridium perfringens SM101]
 gi|110683664|gb|ABG87034.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens SM101]
          Length = 455

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ + YCG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+    
Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L 
Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +L      T+E +   D FP T H+E   LL++K
Sbjct: 419 RDLKVLEENGYKTLE-VQPVDMFPNTAHIENVALLIKK 455


>gi|18309349|ref|NP_561283.1| RNA methyltransferase [Clostridium perfringens str. 13]
 gi|50401631|sp|Q8XNG6|Y367_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE0367
 gi|18144025|dbj|BAB80073.1| RNA methyltransferase [Clostridium perfringens str. 13]
          Length = 455

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ + YCG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+    
Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L 
Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +L      T+E +   D FP T H+E   LL++K
Sbjct: 419 RDLKVLEENGYKTLE-VQPVDMFPNTAHIENVALLIKK 455


>gi|166366309|ref|YP_001658582.1| RNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166088682|dbj|BAG03390.1| probable RNA methyltransferase [Microcystis aeruginosa NIES-843]
          Length = 455

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 26/217 (11%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214
           +T     RDY+ E+   AG  L Y+   ++F Q N       L  V+     ++G+  L+
Sbjct: 255 QTTTIAGRDYITEKF--AG--LTYQLAADTFFQVNTEA-AEALFAVICQKLDLKGEEILI 309

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G F+L LA+    V+ +E    S++ A+ N   N++ N   +  +         
Sbjct: 310 DAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILGAV-------- 361

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332
            E+   +L      + +   I +DPPR G D + +  +       I+YISC   +L RDL
Sbjct: 362 -EKTLPQL------TVKPDIILLDPPRKGCDRSVLDSLLRLQSQRIVYISCQSATLARDL 414

Query: 333 SILSTTHTIERLAL--FDQFPYTRHMECGVLLVRKPS 367
             L  T   + L +   D FP T H+EC   L +K +
Sbjct: 415 QYLCKTGDYQLLEVQTADFFPQTPHVECAAFLRQKTA 451


>gi|194476527|ref|YP_002048706.1| 23S rRNA methyltransferase/RumA [Paulinella chromatophora]
 gi|171191534|gb|ACB42496.1| 23S rRNA methyltransferase/RumA [Paulinella chromatophora]
          Length = 448

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 28/215 (13%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQG 211
            + TK    R ++ ER       L  R   ++F Q N   A   V+ L  +L  + G + 
Sbjct: 252 GSSTKTIAGRPWLIERFC----NLNLRIASDTFFQINTLQAERAVNFLASILNVSTGPK- 306

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+ Y G G  SL LA     VL +E+   SV  AR N   N + + +   +   E   
Sbjct: 307 -ILDAYSGVGTLSLPLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAE--- 362

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                        + +H      + VDPPR GL+   +  + A P    +Y+SCNP +L 
Sbjct: 363 ------------ALALHLPSSDALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLA 410

Query: 330 RDLSILSTTHTIERLAL--FDQFPYTRHMECGVLL 362
           RDL +L+    I+   +   D FP T H+EC  +L
Sbjct: 411 RDLRLLTLAGNIKVTFIQPIDFFPKTTHVECLTIL 445


>gi|90962313|ref|YP_536229.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|90821507|gb|ABE00146.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
           UCC118]
          Length = 459

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL +A+   +V  VEI   ++E A++N + N ++N+      ++ + + 
Sbjct: 312 VIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEK 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
            +++              +   I VDPPR GL  + +   V   P  ++Y+SCNP +L R
Sbjct: 372 WQKQ------------GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVR 419

Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+          T +I+ +   DQFP T H+E   +L R
Sbjct: 420 DIQEFMELGYQVTKSIQPV---DQFPQTTHVESVTVLER 455


>gi|29346053|ref|NP_809556.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|50401554|sp|Q8AA22|Y643_BACTN RecName: Full=Uncharacterized RNA methyltransferase BT_0643
 gi|29337947|gb|AAO75750.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 454

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 186 SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+    N++ +    A   G +  + +LY G G  +  ++R   +V+ +E    +
Sbjct: 283 SFYQTNSEQAYNLYKIAREFAGLTGKEL-VYDLYTGTGTIANFVSRQARQVIGIEYVPEA 341

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N + N        K+        +EF     I+ H  R   I  DPPR+G
Sbjct: 342 IEDAKVNAEINEIKNALFYAGDMKDMLT-----QEF-----INQHG-RPDVIITDPPRAG 390

Query: 304 LDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +    V ++  A P  I+Y+SCNP +  RDL +L   + ++ +   D FP+T H+E  VL
Sbjct: 391 MHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVL 450

Query: 362 L 362
           L
Sbjct: 451 L 451


>gi|298529142|ref|ZP_07016545.1| (Uracil-5)-methyltransferase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510578|gb|EFI34481.1| (Uracil-5)-methyltransferase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 386

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 16/176 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SF Q N  +N  ++++VL+    +   L +LY G GNF+L  A    +VLA+E    + 
Sbjct: 216 GSFFQANWRLNQDLVQYVLSRLAHLD-SLADLYAGAGNFALPCAAGGHKVLALESDSRAA 274

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A        +NN++I        T  +RR      LK      +  + + +DPPRSG 
Sbjct: 275 KGALRAAREGGLNNLRI-------HTGDLRRREAMQTLK-----KFAPQGLILDPPRSGA 322

Query: 305 DD--ATVGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
                ++  +++   + +ISC+  + CRDL   L     I   A+FD FP T HME
Sbjct: 323 GRNLQSLAGLESLQRLAWISCDVVNTCRDLKPFLEAGWRIREAAMFDMFPQTWHME 378


>gi|168212723|ref|ZP_02638348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens CPE str. F4969]
 gi|170715672|gb|EDT27854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens CPE str. F4969]
          Length = 455

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ + YCG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+    
Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L 
Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +L      T+E +   D FP T H+E   LL++K
Sbjct: 419 RDLKVLEENGYKTLE-VQPVDMFPNTAHIENVALLIKK 455


>gi|238854930|ref|ZP_04645260.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3]
 gi|260664217|ref|ZP_05865070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           SJ-7A-US]
 gi|282931642|ref|ZP_06337135.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
 gi|238832720|gb|EEQ25027.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3]
 gi|260562103|gb|EEX28072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           SJ-7A-US]
 gi|281304253|gb|EFA96362.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
          Length = 458

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   L+ + +  +V+ +E    +VE A +N+  NHV N + ++ S ++    
Sbjct: 313 LIDAYSGVGTIGLIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNAEYLQGSVEKILPQ 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
           ++     N    ID        + VDPPR+GL  + +  + Q  P   +YISCNP +L +
Sbjct: 373 LK-----NSGVPID-------ALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQ 420

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 421 DLVMLSEVYDVRVIENVDMLPQTARCEAIAKLV 453


>gi|306829492|ref|ZP_07462682.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
 gi|304428578|gb|EFM31668.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
          Length = 452

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N A N++ N   V  +++     
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIAEAVENSQKNAALNNITNAHYVCDTAE----- 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
                  N +K+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 363 -------NAMKNWFKEGIQPSVILVDPPRKGLTESFIKASAQTGANRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 451


>gi|169343089|ref|ZP_02864116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens C str. JGS1495]
 gi|169298999|gb|EDS81073.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens C str. JGS1495]
          Length = 455

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ + YCG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+    
Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L 
Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +L      T+E +   D FP T H+E   LL++K
Sbjct: 419 RDLKVLEENGYKTLE-VQPVDMFPNTAHIENVALLIKK 455


>gi|217967096|ref|YP_002352602.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724]
 gi|217336195|gb|ACK41988.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724]
          Length = 448

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++  ++V  +E+ + ++E A  N   N V NV+ +   S+E    
Sbjct: 305 VFDAYCGIGTISLFLSKKAEKVYGIEVERSAIEDAWKNARINKVKNVEFIWGRSEE---V 361

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           + R  E  ++ D          I +DPPR G D   +  +       I+YISC P +L R
Sbjct: 362 IPRLIEDGKIPD---------AIVLDPPRKGCDQNLLEAIIRAKVKQIIYISCYPSTLAR 412

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           D++IL    + +  +   D FP T H+E   LL
Sbjct: 413 DVNILVDAGYNLVNIQPVDMFPQTFHVENIALL 445


>gi|55822623|ref|YP_141064.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus
           CNRZ1066]
 gi|55738608|gb|AAV62249.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
           CNRZ1066]
          Length = 453

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +VE A+ N   N + N   V  S++    A
Sbjct: 308 VIDAYSGIGTIGLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVADSAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M +  +     D+         I VDPPR GL ++ +   V   P  I Y+SCNP ++ R
Sbjct: 365 MAKWSQDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+EC  LL R
Sbjct: 416 DIKLYQDLGYELKKVQPVDLFPQTHHIECVGLLTR 450


>gi|52784631|ref|YP_090460.1| YfjO [Bacillus licheniformis ATCC 14580]
 gi|52347133|gb|AAU39767.1| YfjO [Bacillus licheniformis ATCC 14580]
          Length = 468

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N    V + + V  A K + G   +++ YCG G   + +A     +  +++ K S
Sbjct: 298 AFFQLNPIQTVKLYDEVKKAAK-LTGREKVVDAYCGVGTIGMWIADGAKEIRGMDVIKES 356

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++ A  N   + + N + V  +++ +     +E             +R   + VDPPR+G
Sbjct: 357 IDDANQNAKKHGIENARYVTGTAEHWLPKWTKE------------GFRPDVVIVDPPRTG 404

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
            D   +  + Q  P   +Y+SCNP +L +DL  L+  + +E +   D FP T H+E  V 
Sbjct: 405 CDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKDYHVEYIQPVDMFPQTAHVESVVS 464

Query: 362 L 362
           L
Sbjct: 465 L 465


>gi|167039842|ref|YP_001662827.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
 gi|166854082|gb|ABY92491.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514]
          Length = 454

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 17/162 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  ++++YCG G  SL  A+    V  +E    +VE A+ N   N + NV+ +    
Sbjct: 304 LKGDETVIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFI---- 359

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
                + + E+    L D  +   +   + +DPPR G D   +  +V   P  I+Y+SCN
Sbjct: 360 -----SGQAEKVMPELVDKGV---KADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCN 411

Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +L RDL  L    +    +   D FPYT H+E   L+  K
Sbjct: 412 PSTLARDLRYLDDKGYKTMEVQPVDMFPYTHHVESVCLITNK 453


>gi|52079266|ref|YP_078057.1| tRNA (uracil-5-)-methyltransferase [Bacillus licheniformis ATCC
           14580]
 gi|52002477|gb|AAU22419.1| tRNA (uracil-5-)-methyltransferase [Bacillus licheniformis ATCC
           14580]
          Length = 463

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 17/181 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N    V + + V  A K + G   +++ YCG G   + +A     +  +++ K S
Sbjct: 293 AFFQLNPIQTVKLYDEVKKAAK-LTGREKVVDAYCGVGTIGMWIADGAKEIRGMDVIKES 351

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++ A  N   + + N + V  +++ +     +E             +R   + VDPPR+G
Sbjct: 352 IDDANQNAKKHGIENARYVTGTAEHWLPKWTKE------------GFRPDVVIVDPPRTG 399

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
            D   +  + Q  P   +Y+SCNP +L +DL  L+  + +E +   D FP T H+E  V 
Sbjct: 400 CDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKDYHVEYIQPVDMFPQTAHVESVVS 459

Query: 362 L 362
           L
Sbjct: 460 L 460


>gi|306830030|ref|ZP_07463216.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
 gi|304427743|gb|EFM30837.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
          Length = 453

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKKMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYQE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V LV++ S
Sbjct: 416 DLVKLVKVYDLHYIQSVDMFPHTARTEAVVKLVKRKS 452


>gi|300915331|ref|ZP_07132645.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
 gi|307724834|ref|YP_003904585.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513]
 gi|300888607|gb|EFK83755.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
 gi|307581895|gb|ADN55294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513]
          Length = 453

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 17/162 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  ++++YCG G  SL  A+    V  +E    +VE A+ N   N + NV+ +    
Sbjct: 303 LKGDETVIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFI---- 358

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
                + + E+    L D  +   +   + +DPPR G D   +  +V   P  I+Y+SCN
Sbjct: 359 -----SGQAEKVMPELVDKGV---KADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCN 410

Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +L RDL  L    +    +   D FPYT H+E   L+  K
Sbjct: 411 PSTLARDLRYLDDKGYKTMEVQPVDMFPYTHHVESVCLITNK 452


>gi|307265883|ref|ZP_07547432.1| RNA methyltransferase, TrmA family [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919052|gb|EFN49277.1| RNA methyltransferase, TrmA family [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 455

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 15/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++YCG G  SL  A+    V  +E    +VE A+ N   N + NV+ +   +      
Sbjct: 310 VIDVYCGIGTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGDA------ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E+    L D  + +     + +DPPR G D + +  +++  P  I+Y+SCNP +L R
Sbjct: 364 ---EKVMPELADKGVKA---DVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           DL  L    +    +   D FPYT H+E   L++
Sbjct: 418 DLRYLEDNGYKTMEVQPVDMFPYTHHVESVALVL 451


>gi|227511681|ref|ZP_03941730.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC
           11577]
 gi|227085071|gb|EEI20383.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC
           11577]
          Length = 472

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 155/391 (39%), Gaps = 61/391 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGD----DL 58
           Y +QL  K D ++  +  ++    + ++        +P HYR +A F I +DG      L
Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPTHYRNKATFQIRNDGQKVIAGL 167

Query: 59  Y----HIMFDQQTK--------ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106
           Y    H + D +T         + MR    M   L I     E  A I    ++RA    
Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVRA---- 223

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
                + +D+A VT I          +   R+    H     + ++   N  K  L   +
Sbjct: 224 ----ATATDEAQVTFITQSKKLLKKHQLLERID---HDLPEVVSVMQNVNPGKTSLV--W 274

Query: 167 VDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK-GIQGDLLELY 217
            +E + +AG+  I   + N        +F Q N  +   + +    A +   +  L++ Y
Sbjct: 275 GEETIHLAGKDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAY 334

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G   L +AR    V  ++  K +V+ A  N   N + N             A+    
Sbjct: 335 SGVGTIGLSVARQVREVRGMDTIKDAVDDANANAIKNGIVN-------------ALYEVG 381

Query: 278 EFNRLKDIDIH-SYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI 334
           E  +L  + I   +    + VDPPR+GL D+ +  +    P   +YISCNP +L RDL  
Sbjct: 382 EAEKLLPLWIEDGWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVK 441

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L+  + +E +   D  P T   EC V   +K
Sbjct: 442 LTRKYNVEYIQSVDLMPQTSRCECVVKFKKK 472


>gi|254392236|ref|ZP_05007422.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294815599|ref|ZP_06774242.1| Putative RNA methyltransferase [Streptomyces clavuligerus ATCC
           27064]
 gi|326443949|ref|ZP_08218683.1| putative RNA methyltransferase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705909|gb|EDY51721.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294328198|gb|EFG09841.1| Putative RNA methyltransferase [Streptomyces clavuligerus ATCC
           27064]
          Length = 448

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 97/206 (47%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER    GRT  YR     F Q +      +++ V+      +G+  L+LYCG G 
Sbjct: 253 RGFVRERAD--GRT--YRVGAGGFWQVHPQAADTLVKAVMQGLMPRKGETALDLYCGVGL 308

Query: 223 FSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  +A        VL +E +K +VE AR+N+      +++ VR+   +  Q + R    
Sbjct: 309 FAGAIAERVGDEGAVLGIESSKRAVEDARHNL-----RDLERVRIEQGKVEQVLPR---- 359

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
            R+   D+       I +DPPR+G    TV  +   A   I Y++C+P +L RDL     
Sbjct: 360 TRITSTDL-------IVLDPPRAGAGKRTVTHLASLAARRIAYVACDPAALARDLGYFRE 412

Query: 338 THTIER-LALFDQFPYTRHMECGVLL 362
                R L  FD FP T H+EC  +L
Sbjct: 413 AGYRPRTLRAFDLFPMTHHVECVAIL 438


>gi|168028766|ref|XP_001766898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681877|gb|EDQ68300.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 492

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 33/219 (15%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--- 212
           +K  +   + Y+ ERL    R L++    NSF Q N      +L   +     ++GD   
Sbjct: 283 DKEHVLYGKAYITERL----RGLVFEISANSFFQTNTS-QAEVLYQKVEEQCALKGDGSE 337

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            LL+L+CG G   L +A+    V   E+ + +V  AR N A N + N   ++    + T 
Sbjct: 338 VLLDLFCGTGTIGLSMAKRVKHVYGYELVQEAVVDARRNAARNGIQNATFIQGDLNKLTD 397

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLC 329
                 EF   KD      R   +  DP R G+    +  ++Q     I+YISCNP +  
Sbjct: 398 ------EFG--KDFP----RPDVVITDPNRPGMHIKLIKYLLQLRARRIVYISCNPATCA 445

Query: 330 RDLSILS----------TTHTIERLALFDQFPYTRHMEC 358
           RDL +L           T + +  +   D FP T H+EC
Sbjct: 446 RDLDLLCHTGDEGVESPTRYRLVHVQPVDMFPQTPHIEC 484


>gi|213410094|ref|XP_002175817.1| tRNA (uracil-5-)-methyltransferase [Schizosaccharomyces japonicus
           yFS275]
 gi|212003864|gb|EEB09524.1| tRNA (uracil-5-)-methyltransferase [Schizosaccharomyces japonicus
           yFS275]
          Length = 488

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           L++ YCG+G FS+  +  F  V+ VEI+  SV  A+ N  AN + N + +V  + K F +
Sbjct: 332 LVDAYCGSGLFSITCSEGFQSVIGVEISSDSVAYAKTNAEANGIKNAEYLVGEAEKIFAK 391

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                 E                + +DPPR G D A +  +  Y    ++YISCN  +  
Sbjct: 392 IETPAAE--------------TAMIIDPPRKGCDTAFLDQLLTYSPARVVYISCNVHTQA 437

Query: 330 RDLSI-----LSTTHTIERLALFDQFPYTRHMECGVLLV 363
           RD+S      L   + I  +  FD FP + H+E  ++L+
Sbjct: 438 RDISYILNHELGKDYKINDVRGFDLFPQSHHVESVLVLL 476


>gi|313205382|ref|YP_004044039.1| 23S rRNA m(5)u-1939 methyltransferase [Paludibacter propionicigenes
           WB4]
 gi|312444698|gb|ADQ81054.1| 23S rRNA m(5)U-1939 methyltransferase [Paludibacter propionicigenes
           WB4]
          Length = 469

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 24/203 (11%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G   IY ++E         SF Q N+    + L  +      + G+ L  +LY G G  +
Sbjct: 279 GNECIYEEMEGLKFKIGPKSFYQTNSD-QAYELYKITRNFAQLTGNELVYDLYTGTGTIA 337

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
             ++    +V+ +E    ++E A  N   N ++N        K+   A            
Sbjct: 338 NFISHQAKQVIGIEYVPEAIEDAFVNSEINKISNTLFYAGDMKDILNAAF---------- 387

Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
           I+ H  +   I  DPPR+G+ +D    ++ A P  I+Y+SCNP +  RDLS+L   + + 
Sbjct: 388 IEEHG-KPDVIITDPPRAGMHEDVINAILFAAPERIVYVSCNPATQARDLSLLDCQYKVT 446

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T H+E  VLL RK
Sbjct: 447 AIQPVDMFPHTHHVENVVLLERK 469


>gi|291562935|emb|CBL41751.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
           SS3/4]
          Length = 475

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 14/154 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  S  LA+   +V  VEI   ++E AR N   N ++NV+     ++E    + 
Sbjct: 328 DLYCGIGTISSFLAQKAGKVCGVEIIPAAIEDARENAKRNGLDNVEFFVGKAEE---VLP 384

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
            + E N +K           I VDPPR G D+  +  +V+  P  ++Y+SC+  +L RD+
Sbjct: 385 EQYEKNHIK--------ADVIVVDPPRKGCDELCLETIVKMAPEKVVYVSCDSSTLARDV 436

Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
                  + ++R+   D F  + H+E   LL +K
Sbjct: 437 KYFGENGYAVKRVRTVDMFGMSGHVETVALLTKK 470


>gi|257885254|ref|ZP_05664907.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,501]
 gi|257821106|gb|EEV48240.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,501]
          Length = 460

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 27/222 (12%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211
           +A KT + +     DE + + G+  I  QI E +F   P A   ++  +  L   +GI+ 
Sbjct: 252 QAQKTSLVMG----DETIHLWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307

Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   +++ YCG G   L +A+    V  ++    ++  A+ N+     +N +    
Sbjct: 308 LDVQPNETIVDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNVERLGYHNTRYEVG 367

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
           ++++       E             ++   I VDPPR+GLD+A +  +  YP   ++YIS
Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYIS 415

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CN  +L RDL  LS    IE L   D FP T   E  V + R
Sbjct: 416 CNVSTLARDLVNLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457


>gi|229830195|ref|ZP_04456264.1| hypothetical protein GCWU000342_02304 [Shuttleworthia satelles DSM
           14600]
 gi|229791493|gb|EEP27607.1| hypothetical protein GCWU000342_02304 [Shuttleworthia satelles DSM
           14600]
          Length = 394

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 164/392 (41%), Gaps = 68/392 (17%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y++QL  K   +  ++ A+  P   +  + P +YR +A            H +     K 
Sbjct: 27  YKEQLKRKEKEVADLLKAYGRPEPILGMNFPYYYRNKA------------HAVLGGSLKG 74

Query: 70  RMRIDYFMPGS---LLINALMIE------MMATIR-LEPLLRAKLFQIDY---------- 109
           ++    +  GS   + I+   IE      ++A++R L P  + + +  D           
Sbjct: 75  KIVCGTYERGSHRIVNIDRCQIEDRECDQLIASVRELLPSFKVEPYNEDTGRGCLRHIIA 134

Query: 110 -LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
             T+   Q ++ L+  +    + ++    LR A       +Q I   + + +  DR    
Sbjct: 135 RRTADGGQIMLILVTAQAAFPSRKKFVSALRKAHPNITTILQNINGQSTSVVLGDRYEVL 194

Query: 165 ---DYVDERLTVAGRTLIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCG 219
               Y+++RL  A     +R    +F Q N+     ++ L   +A  KG +  +L+ YCG
Sbjct: 195 YGPGYIEDRLMGA----RFRISPGAFYQVNSQQTKKLYRLAVDMADLKGKE-RVLDTYCG 249

Query: 220 NGNFSLVLARHFDR-------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            G   +  A    R       ++ VE    +V  AR N   N +   + V   +  F   
Sbjct: 250 TGTIGIAAAVDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADAGAF--- 306

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPH-ILYISCNPDSLCR 330
           M  E E  R  D+         +F+DPPR+G  ++  + + +  P  I+YISC+P +  R
Sbjct: 307 MLAEAEAGRSCDL---------VFMDPPRAGSTEEFLLALRRLVPEKIVYISCDPKTQAR 357

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL  L + + I R+A  D FP+T  +E  VLL
Sbjct: 358 DLKYLDSAYAIRRIAPVDMFPFTDGIENVVLL 389


>gi|168209109|ref|ZP_02634734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712831|gb|EDT25013.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens B str. ATCC 3626]
          Length = 455

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 17/158 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ + YCG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+    
Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L 
Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +L      T+E +   D FP T H+E   L+ RK
Sbjct: 419 RDLKVLEDNGYKTLE-VQPVDMFPNTSHIETVALICRK 455


>gi|253990336|ref|YP_003041692.1| 23S rRNA methyluridine methyltransferase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781786|emb|CAQ84949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photorhabdus
           asymbiotica]
          Length = 377

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 22/156 (14%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    R+  +EI+  +++ AR +     + N++   + S  F  
Sbjct: 236 SMWDLFCGVGGFGLHCADKNTRLTGIEISPEAIDCARDSAKTLGLENIEFQALDSTRFAI 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDS 327
           A  +  E                + V+PPR G    L D    MV  Y  ILY SCN  +
Sbjct: 296 AKEQIPEL---------------VLVNPPRRGIGKELCDYLSRMVPGY--ILYSSCNAQT 338

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           + +D++ L+  + +E++ LFD FP+T H E   LLV
Sbjct: 339 MAKDIAALA-NYRVEKIQLFDMFPHTEHYEVLTLLV 373


>gi|183603351|ref|ZP_02964368.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569936|gb|EDT90464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1087-00]
          Length = 367

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 224 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 283

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 284 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 331

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 332 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 366


>gi|261856076|ref|YP_003263359.1| RNA methyltransferase, TrmA family [Halothiobacillus neapolitanus
           c2]
 gi|261836545|gb|ACX96312.1| RNA methyltransferase, TrmA family [Halothiobacillus neapolitanus
           c2]
          Length = 442

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 30/189 (15%)

Query: 187 FTQPNAGIN----VHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F Q N  +N    V  LEW+        GD +L+L+ G GNF+L +AR   +V AVE+ +
Sbjct: 270 FIQINTDVNRAMIVQALEWLDVQP----GDHVLDLFAGLGNFTLPIARKAAKVTAVELDE 325

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT---IFVD 298
             V+    + AAN + N + V                 N  +    H +  +T   + +D
Sbjct: 326 HMVKRGAQSAAANGITNTEHVIG---------------NLFEPDPTHLWMQQTYDRVLLD 370

Query: 299 PPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRH 355
           PPR+G +     + +  P  I+Y+SC+P SL RD  IL   H    +A  + D FP+T H
Sbjct: 371 PPRAGAEAMMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYRLIAAGVMDMFPHTSH 430

Query: 356 MECGVLLVR 364
           +E   +  R
Sbjct: 431 IESMAVFER 439


>gi|167037107|ref|YP_001664685.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115522|ref|YP_004185681.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855941|gb|ABY94349.1| RNA methyltransferase, TrmA family [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928613|gb|ADV79298.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 460

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++YCG G  SL  A+    V  +E    +VE A+ N   N + NV+ +   +      
Sbjct: 310 VIDVYCGIGTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGDA------ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E+    L D  + +     + +DPPR G D + +  +++  P  I+Y+SCNP +L R
Sbjct: 364 ---EKVMPELVDKGVKA---DVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L    +    +   D FPYT H+E   L +R
Sbjct: 418 DLRYLEDNGYKTMEVQPVDMFPYTYHVESVALALR 452


>gi|301299733|ref|ZP_07205983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852664|gb|EFK80298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 459

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 16/154 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL +A+   +V  VEI   ++E A++N + N ++N+      ++ + + 
Sbjct: 312 VIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEK 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
            +++              +   I VDPPR GL  + +   V   P  I+Y+SCNP +L R
Sbjct: 372 WQKQ------------GIKPDVIMVDPPRKGLTSSLIQSAVTMEPKKIVYVSCNPATLVR 419

Query: 331 DL-SILSTTHTIER-LALFDQFPYTRHMECGVLL 362
           D+   +   + + + +   DQFP T H+E   +L
Sbjct: 420 DIQEFMELGYQVTKPIQPVDQFPQTTHVESVTVL 453


>gi|255691623|ref|ZP_05415298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
           DSM 17565]
 gi|260622692|gb|EEX45563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
           DSM 17565]
          Length = 472

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 26/201 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G  +
Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKVAREFAGLTGNELVYDLYTGTGTIA 340

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             ++R   +V+ +E    ++E A+ N   N + N        K+  TQ            
Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKDMLTQDF---------- 390

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341
            I+ H  R   I  DPPR+G+    + ++  A P  I+Y+SCNP +  RDL +L   + +
Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLDKKYKV 448

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           + +   D FP+T H+E  VLL
Sbjct: 449 KAVQPVDMFPHTHHVENVVLL 469


>gi|227486795|ref|ZP_03917111.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235265|gb|EEI85280.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 456

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 26/214 (12%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN--AGINVHMLEWVLAATKGIQGDLL 214
           K K+   ++Y+ E +      L +R    SF QPN      ++   + LA       D+L
Sbjct: 263 KIKLIYGKEYITEEMM----GLQFRISPFSFFQPNVFTAEKLYQKAFDLAEIDKTM-DIL 317

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G  + ++A        +EI + +VE A+ N   N ++NV  +            
Sbjct: 318 DLYSGTGTITQLMASVAKSATGIEIVEEAVEKAKENARINGLDNVNFLCG---------- 367

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332
                + L++I+    ++  + +DPPR+G+  A++  +        +YISCNP +   +L
Sbjct: 368 -----DVLEEIEKVGNKYDVVVLDPPRAGISPASLEKILNIDCKKFVYISCNPKTQMENL 422

Query: 333 -SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            + +   + I+   ++DQFP +RH+E  + L++K
Sbjct: 423 KTFIEKGYEIKDYEIYDQFPNSRHLE-AIALIQK 455


>gi|226330766|ref|ZP_03806284.1| hypothetical protein PROPEN_04686 [Proteus penneri ATCC 35198]
 gi|225201561|gb|EEG83915.1| hypothetical protein PROPEN_04686 [Proteus penneri ATCC 35198]
          Length = 369

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 18/157 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L +++CG G F L  A    ++  +EI+  ++E AR +     + +V+   + S  +   
Sbjct: 229 LWDMFCGTGGFGLHCADKSTQLTGIEISPEAIECARLSAQELGLEHVEFQALDSTGYALT 288

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                E                + V+PPR G+ +A  G +       ILY SCN  ++ +
Sbjct: 289 KESVPEL---------------VLVNPPRRGIGEALCGYLNTMKPRFILYSSCNAQTMAK 333

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           D+  L T + I+R+ LFD FP+T H E   LLV K S
Sbjct: 334 DIQQL-THYQIDRVQLFDMFPHTSHYEVLTLLVLKDS 369


>gi|116330374|ref|YP_800092.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116124063|gb|ABJ75334.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 393

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 16/155 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++ YCG G  SL +A    +V+ +E    S+ +A     AN + NV   +       Q
Sbjct: 253 NVVDAYCGIGTISLYVASKSKKVVGLEENPNSIRSAVGAAKANGIVNVAFTKGKVLRTLQ 312

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329
           A   E+                 + +DPPR GLD  T  ++       ILY+SCNP++L 
Sbjct: 313 AALNEKS--------------DVVILDPPREGLDPETKKILLNSKIHKILYVSCNPETLL 358

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD   L+      ++   D FP+T H+E   +  R
Sbjct: 359 RDAVALTKVFKYTKMTPVDLFPHTSHLESVSVFTR 393


>gi|158319773|ref|YP_001512280.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158139972|gb|ABW18284.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs]
          Length = 450

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 39/257 (15%)

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
           TSQS       I+H  L D      +  R+   LH     +    +A++ ++   RDY+ 
Sbjct: 215 TSQSP------IHHEALKDMILSLNLSGRIAGILHTINDGLGDTVKADQMELLYGRDYIV 268

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYCGNGNF 223
           E L      L ++    SF Q N+       E +    +   GD+      +LY G G  
Sbjct: 269 EELL----GLKFKISPFSFFQTNS----LGAEKLYTIAREFAGDIDDKIVFDLYSGTGTI 320

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           + ++A    +V+ +EI + +VE A+ N   N ++NV+ +     E    ++ + +     
Sbjct: 321 AQIMAPVAKKVIGIEIVEEAVEMAKENAKMNGLDNVEFIAGDVLEAVNDLKEKPDL---- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHT 340
                      I +DPPR G+    +  ++   P   +Y+SCNP +L RDL + +   + 
Sbjct: 377 -----------IVIDPPRDGIHPKAIHKIIDFNPDTFVYVSCNPVTLVRDLKVFMERGYR 425

Query: 341 IERLALFDQFPYTRHME 357
           +E++ L D F  T H+E
Sbjct: 426 VEKVKLMDMFARTNHVE 442


>gi|332686169|ref|YP_004455943.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC
           35311]
 gi|332370178|dbj|BAK21134.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC
           35311]
          Length = 460

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  +L LA     V  VEI + ++  AR N A N + N       ++E    
Sbjct: 312 VVDAYCGIGTIALSLAEQVKHVYGVEIIEAAILDARENAAINQIENCTFNIGKAEEV--- 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPH-ILYISCNPDSLCR 330
                    + D          IFVDPPR GL ++ +    +  P+ I+YISCNP +L R
Sbjct: 369 ---------MIDWQKAGISPNIIFVDPPRKGLTESFIETCTEMDPNRIIYISCNPATLAR 419

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           DL + +   +   ++   D FP T H+E   LL
Sbjct: 420 DLKLFAELGYETRKIQPVDLFPQTYHVETVALL 452


>gi|323489776|ref|ZP_08095001.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
 gi|323396514|gb|EGA89335.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
          Length = 453

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 26/205 (12%)

Query: 166 YVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           + DE LT+ G+ +I  +I +        SF Q N  +   +L     A   + G+  +++
Sbjct: 254 FGDETLTLWGKDVIEDRIGDVRFEISARSFYQINP-VQTEVLYGQALAYAQLTGEETVID 312

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  SL LA+    V+ VEI   ++E A+ N   N + N       +++       
Sbjct: 313 AYCGIGTISLFLAQRAKFVMGVEIVPQAIEDAKRNAELNGLTNTLFEAGPAEQVI----- 367

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333
            R +   K  D+       + VDPPR G D+  +  +  Q    ++Y+SCNP +L RDL 
Sbjct: 368 PRWYKEGKKADV-------LVVDPPRKGCDEQLLHTILKQRPTRVVYVSCNPATLARDLR 420

Query: 334 ILS-TTHTIERLALFDQFPYTRHME 357
           IL    +  + +   D FP + H E
Sbjct: 421 ILEDGGYRTKEVQPVDMFPQSTHCE 445


>gi|300172623|ref|YP_003771788.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887001|emb|CBL90969.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
          Length = 498

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 19/205 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
           +DY++E  TV G+T  ++    +F Q N   + V   E +LA        L++ Y G G 
Sbjct: 309 KDYIEE--TVMGKT--FQLSPRAFMQLNYTQMAVVYKEALLALDLTHADKLVDAYAGVGT 364

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA     V  +EI   +V+ A  N   NH+ N +    +++E     + E      
Sbjct: 365 IGLSLADKVGEVRGMEIIPEAVDDANINAKINHIENAQYEVGTAEELFPKWQSE------ 418

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340
                  +    + VDPPR+GLD A    +++  P   +YISCN  +L RDL  L+  + 
Sbjct: 419 ------GWLADALVVDPPRTGLDTALRREILRTKPEKFVYISCNASTLARDLVDLTKAYK 472

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++ +   D FP T   E  V L R+
Sbjct: 473 VDYIQSIDMFPQTARWEGVVKLTRR 497


>gi|288905623|ref|YP_003430845.1| RNA methyltransferase [Streptococcus gallolyticus UCN34]
 gi|288732349|emb|CBI13921.1| putative RNA methyltransferase [Streptococcus gallolyticus UCN34]
          Length = 456

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A++   V  VE+ + +VE A+ N A N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMAT 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328
             ++              +   I VDPPR GL +    A+V M      I YISCNP ++
Sbjct: 368 WSKD------------GIKPSVILVDPPRKGLTENFIKASVAMQPE--KITYISCNPATM 413

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +     + ++++   D FP T H+E   LLVR
Sbjct: 414 ARDIKLYQELGYKLQKVQPVDLFPNTHHVEAVSLLVR 450


>gi|332983359|ref|YP_004464800.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
           BON]
 gi|332701037|gb|AEE97978.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
           BON]
          Length = 456

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 18/165 (10%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A   G Q  +L+ YCG G  SL+ A+   ++  +E  + +V+ AR N   N ++NV    
Sbjct: 303 AGLDGTQ-TVLDAYCGIGTISLIAAQKAAKIYGIEEIQQAVDDARENARLNDISNV---- 357

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYI 321
               EF  A + E    R  +  +   R   I +DPPR G D   +   V+  P  ++Y+
Sbjct: 358 ----EFICA-KAEDAIGRFIEDKV---RIDVIIMDPPRKGCDKGFLETAVRLCPERMVYV 409

Query: 322 SCNPDSLCRDLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364
           SCNP +L RD+  L+  H  +  A+   D FP+T H+E  VL+ R
Sbjct: 410 SCNPATLARDMRFLA-DHGYKATAVQPVDMFPHTTHVETVVLMSR 453


>gi|293605691|ref|ZP_06688069.1| 23S rRNA (uracil-5-)-methyltransferase [Achromobacter piechaudii
           ATCC 43553]
 gi|292815929|gb|EFF75032.1| 23S rRNA (uracil-5-)-methyltransferase [Achromobacter piechaudii
           ATCC 43553]
          Length = 517

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 104/231 (45%), Gaps = 34/231 (14%)

Query: 144 ARKYQIQ--LIGRANKTKICLDRDYVDE---RLTVAGRTLIYRQIENSFTQPNAGINVHM 198
           A K+ +Q  L  +  +T   L+R++ D     +   G  + YR  +  FTQ N  IN  M
Sbjct: 216 AAKHNVQWWLQAKGPETVHPLEREHADTLSYTMPEFGLRMPYRPTD--FTQVNHAINRSM 273

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +   L        D + +L+CG GNF+L LA      + VE +K   + A ++ AA H  
Sbjct: 274 VSRALKLLDVQPTDRVADLFCGLGNFTLPLATQGREAVGVEGSKALTDRA-FDAAARH-- 330

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR----FKTIFVDPPRSGLDDATVGM-- 311
                         A R       L ++D H  R    F  + +DPPR G    +  +  
Sbjct: 331 ------------GLAERTSFATLNLFEVDAHWLRSLGYFDRMLIDPPREGAHAVSQALSE 378

Query: 312 --VQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
             VQ  P  I+Y+SCNP +L RD SIL     + ++   + + FP+T H+E
Sbjct: 379 LSVQERPRRIVYVSCNPATLARDASILVHEGGYELKSAGVINMFPHTGHVE 429


>gi|227432075|ref|ZP_03914088.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352157|gb|EEJ42370.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 464

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 21/181 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N      +  + LAA K        +++ Y G G  +L +A    ++  V++ +
Sbjct: 289 NSFYQVNPQTTATL--YALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVE 346

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            ++E A  N   N + N + V   + E         +  +  D      +   +FVDPPR
Sbjct: 347 GAIEDAEKNAKNNQITNAEFVLADAPE---------QMAKWAD---EGLKPNVVFVDPPR 394

Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYTRHME 357
            GL    +  V+A      +YISCNP +L RD + IL+    IE  +   DQFP T H+E
Sbjct: 395 KGLTQELIDAVKAMNPEKFVYISCNPATLTRDAVQILAAGFEIEGAVQPLDQFPQTTHVE 454

Query: 358 C 358
            
Sbjct: 455 S 455


>gi|315613133|ref|ZP_07888043.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315314695|gb|EFU62737.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 452

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N A N++ N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEMIPEAVENSQKNAALNNITNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 416 DIKLYQELGYELKKVQPMDLFPQTHHVECVSLLVKR 451


>gi|239625145|ref|ZP_04668176.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239519375|gb|EEQ59241.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 554

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 22/216 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
            NK  +   + Y+ + L        +R    SF Q N  +   +L        G++G   
Sbjct: 356 GNKENVLYGKGYIVDELC----GCKFRISSKSFYQINP-VQTEVLYGKALELAGLKGQEV 410

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   ++ +R   +V+ VE+ + +V+ A  N   N ++N++     +  F   
Sbjct: 411 VIDAYCGIGTIGIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFYCNDAGRFMVN 470

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           M       R    D+       + +DPPRSG  +  +  +       ++Y+SCNP++L R
Sbjct: 471 M-----AERGDKADV-------VIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVR 518

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  +    +  E +   D FP TRH E  V L RK
Sbjct: 519 DVRYMKKLGYAAEGVWPVDMFPATRHTEIIVELCRK 554


>gi|291549934|emb|CBL26196.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14]
          Length = 456

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 23/220 (10%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + ++++T+I   +D+  E+L      L ++    SF QPN+     + E 
Sbjct: 246 LHILNDSLSDVVKSDETRILYGQDFFYEKLL----GLEFKITPFSFFQPNSKGAEVLYET 301

Query: 202 VLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V      I   ++ +L+ G G    VLA    +V+ VEI + +VEAA+ N   N + N K
Sbjct: 302 VREYIGDIDNQVVFDLFSGTGTIGQVLAPVAKKVIGVEIIEEAVEAAKENAVRNGLYNCK 361

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318
            +                F  L +I+    +   I +DPPR G+    +  +  Y    I
Sbjct: 362 FIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILNYGVDKI 406

Query: 319 LYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357
           +YISC   SL RDL ++    + +E++   DQF  T H+E
Sbjct: 407 VYISCKMTSLARDLEMMQLAGYRVEKMTAVDQFCETVHVE 446


>gi|262196875|ref|YP_003268084.1| deoxyribonuclease/rho motif-related TRAM [Haliangium ochraceum DSM
           14365]
 gi|262080222|gb|ACY16191.1| deoxyribonuclease/rho motif-related TRAM [Haliangium ochraceum DSM
           14365]
          Length = 491

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 141/362 (38%), Gaps = 46/362 (12%)

Query: 32  NLQIFRSE--PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP---------GS 80
            L+  RSE  P H+R RA  H W          +  +  E   I +F P         G 
Sbjct: 149 ELRPVRSEVPPYHWRRRARLH-W----------YRPRKSEAATIGFFGPRSHRVSPIDGC 197

Query: 81  LLINALMIEMMATIR--LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA------WR 132
           + +   ++  ++ IR  L P L  +   ++ L        +++     LD A        
Sbjct: 198 VQLAPPLLAALSVIRERLAPTL-GRTGSMELLAGHGGDVHLSIRGRCDLDAAADLVGQGP 256

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDY-----VDERLTVAGRTLIYRQIENSF 187
              +R+ D       + +   R  K  I L+  +     V  + +  G   +  ++EN+ 
Sbjct: 257 VVGVRVEDQAGQPGARRRPPARFGKPHIELEAGFFGRADVFAQSSADGNRALLDEVENAL 316

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  +    +    +  G    +LEL+ G GN +  LA H  R++AVE  KP     
Sbjct: 317 RDVAQSQSQSQSQSAEESAGGGGLAILELHAGAGNLTRALATHAARLVAVERRKPP---- 372

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            + +              +     A       ++L D D    RF  I +DPPR+G  + 
Sbjct: 373 -WTLPVGLEAASADAAAVAARAFVAGDVADVCDKLSDADA---RFDVIVLDPPRTGAREV 428

Query: 308 TVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLA-LFDQFPYTRHMECGVLLVRK 365
              +    P +I+Y+SCNP +L RDL +LS      R A   D  P T H+E   LL R+
Sbjct: 429 LEPLSALAPGYIIYVSCNPATLARDLDVLSEHGYAARWAQPLDLMPQTSHIEVVTLLERR 488

Query: 366 PS 367
           P+
Sbjct: 489 PA 490


>gi|161501856|ref|NP_763285.2| 23S rRNA methyluridine methyltransferase [Vibrio vulnificus CMCP6]
 gi|50401569|sp|Q8D4B4|RUMB_VIBVU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|319999780|gb|AAO08275.2| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio vulnificus
           CMCP6]
          Length = 376

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 85/155 (54%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L  A H ++V+ +EI + ++ +A+ +     ++N++   + S  ++QA
Sbjct: 238 MWDLFCGVGGFALHCAPHAEQVIGIEIEEEAINSAKLSAQQLGIDNLRFSALDSAAYSQA 297

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
             +  +                I V+PPR GL  A    ++  A  +++Y SCNP ++ +
Sbjct: 298 QTQAADL---------------ILVNPPRRGLGQALSEQLEQLASQYLIYSSCNPVTMQQ 342

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL+ L  ++ +ER   FD FP+T H E  +LLVR+
Sbjct: 343 DLAHL-PSYRVERAQWFDMFPHTDHAEVMMLLVRQ 376


>gi|326391815|ref|ZP_08213332.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992144|gb|EGD50619.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 455

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 15/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++YCG G  SL  A+    V  +E    +VE A+ N   N + NV+ +   +      
Sbjct: 310 VIDVYCGIGTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDA------ 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              E+    L D  + +     + +DPPR G D + +  +++  P  I+Y+SCNP +L R
Sbjct: 364 ---EKVMPELADKGVKA---DVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLAR 417

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           DL  L    +    +   D FPYT H+E   L++
Sbjct: 418 DLRYLEDNGYKTMEVQPVDMFPYTSHVESVALVL 451


>gi|289422763|ref|ZP_06424602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           anaerobius 653-L]
 gi|289156818|gb|EFD05444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           anaerobius 653-L]
          Length = 452

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 28/211 (13%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPN--AGINVHMLEWVLAATKGIQGDLLELY 217
           DE   + GR   Y ++          SF Q N      ++ +    A  +G    + +LY
Sbjct: 257 DEMRILYGRDYFYEEVLGLRFKVSPFSFFQTNTKGAEALYTIARKFAGDRGHGKVVFDLY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G    ++A+   +V  +E+ + +V AA  N   N+++N + +     +   ++  + 
Sbjct: 317 SGTGTIGQLMAKTAKKVYGIELVEEAVVAANQNAVLNNLDNCEFIAGDVAKVVSSLPEKP 376

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSI 334
           E                I VDPPR+G+    V  +  +    I+Y+SCNP SL  + +  
Sbjct: 377 EL---------------IIVDPPRAGILGNGVKDIAEFGAKEIVYVSCNPRSLVENVVEF 421

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
               + +++L L D FP T H E  VL+ RK
Sbjct: 422 EDRGYKLDKLELMDLFPNTPHCESVVLMTRK 452


>gi|190344507|gb|EDK36191.2| hypothetical protein PGUG_00289 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 568

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 116/224 (51%), Gaps = 25/224 (11%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQ 210
           G ++KT +   +    E++  +    I++   N F Q N+ I   ++++V    ++KGI+
Sbjct: 355 GESSKTCLTDSKKVCTEKIGES----IFQFPANEFFQVNSSILPDVVDFVRYSMSSKGIR 410

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV---NNVKIVRMS 265
            ++++ YCG+G F + LA      +V+ +EI++ +++ A +N   N +    +V+ +  +
Sbjct: 411 -NIVDAYCGSGFFGISLANDVKNGKVVGIEISRQAIKYATHNAKLNGLAVPQHVQFIEGT 469

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISC 323
           S     A+ +   F   K     +     + +DP R G D++ +  +  + P  I+Y+SC
Sbjct: 470 SN----AIFKHESFLSAK----LNPEETMVIIDPSRKGSDESFLQQLHEFGPKLIVYVSC 521

Query: 324 NPDSLCRDL---SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           N  S  RDL   + +S  +T+  +  FD FP T+H+EC  +L R
Sbjct: 522 NVFSQARDLQYFTAMSQKYTVHEVIGFDFFPQTKHVECVAVLER 565


>gi|189466070|ref|ZP_03014855.1| hypothetical protein BACINT_02440 [Bacteroides intestinalis DSM
           17393]
 gi|189434334|gb|EDV03319.1| hypothetical protein BACINT_02440 [Bacteroides intestinalis DSM
           17393]
          Length = 476

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 28/205 (13%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNG 221
           T  G+  I+ ++E         SF Q N+    N++ +    A   G +  + +LY G G
Sbjct: 280 TFKGKDHIFEEMEGLRFKIGPKSFYQTNSEQAYNLYKIARNFAGLTGKEL-VYDLYTGTG 338

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFN 280
             +  +++   +V+ +E    ++E A+ N   N + N        K+  TQ         
Sbjct: 339 TIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKDMLTQDF------- 391

Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST 337
                 I+ Y R   I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L  
Sbjct: 392 ------INQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDV 445

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            + ++ +   D FP+T H+E  VLL
Sbjct: 446 KYKVKAVQPVDMFPHTHHVENVVLL 470


>gi|322389307|ref|ZP_08062867.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 903]
 gi|321144051|gb|EFX39469.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 903]
          Length = 452

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N A N++ N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVK 450


>gi|302557928|ref|ZP_07310270.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302475546|gb|EFL38639.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 449

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER    GRT  +R     F Q +      ++  V+      +G++ L+LYCG G 
Sbjct: 257 RPFVRERAD--GRT--HRVAGGGFWQVHPKAADTLVTAVMQGLLPRKGEMALDLYCGVGL 312

Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA        VL +E  K +VE AR+N+A     +   VR+   +    + R    
Sbjct: 313 FAGALADRVGETGAVLGIESGKRAVEDARHNLA-----DFPRVRIEQGKVDSVLPR---- 363

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
             + D+D+       + +DPPR+G    TV  + +     I Y++C+P +L RDL+    
Sbjct: 364 TGITDVDL-------VVLDPPRAGAGRKTVEHLSSLGARRIAYVACDPAALARDLAYFRD 416

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + +  L +FD FP T H+EC  +L
Sbjct: 417 GGYRVRTLRVFDLFPMTHHVECVAIL 442


>gi|302392787|ref|YP_003828607.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM
           5501]
 gi|302204864|gb|ADL13542.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM
           5501]
          Length = 456

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+   +V  +E+   +++ A+ N   N+++N          + + 
Sbjct: 313 VVDAYCGIGSISLYLAQAAKQVYGIEVVSQAIDDAKENAELNNIDNC---------YFKV 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            +  +   +LK    +    + I VDPPR G  +  +   ++  P  I+Y+SC P SL R
Sbjct: 364 GKVRKILPKLKS---NGLNPEVIVVDPPRKGCHEEVLETFLELKPERIIYVSCKPSSLAR 420

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L+   + +E +   D FP T H+E    +VR
Sbjct: 421 DLEQLTAADYEVEEIQPVDMFPQTYHIEAVAKIVR 455


>gi|289167962|ref|YP_003446231.1| hypothetical protein smi_1119 [Streptococcus mitis B6]
 gi|288907529|emb|CBJ22366.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 452

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE +  N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSNKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 451


>gi|262361371|gb|ACY58092.1| RNA methyltransferase [Yersinia pestis D106004]
          Length = 240

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    ++  +EI   ++  AR +     + NV    + S  F  
Sbjct: 100 SMWDLFCGVGGFGLHCAGPETQLTGIEINAEAIACARQSAEQLGLKNVSFAALDSTRFAT 159

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A  +  E                + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 160 AEAQIPEL---------------VLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMA 204

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+S+L+  H IER+ LFD FP+T H E   LL 
Sbjct: 205 KDISLLAGYH-IERVQLFDMFPHTSHYEVLTLLT 237


>gi|58336866|ref|YP_193451.1| RNA methyltransferase [Lactobacillus acidophilus NCFM]
 gi|227903424|ref|ZP_04021229.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           acidophilus ATCC 4796]
 gi|58254183|gb|AAV42420.1| RNA methyltransferase [Lactobacillus acidophilus NCFM]
 gi|227868744|gb|EEJ76165.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           acidophilus ATCC 4796]
          Length = 450

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E+ + +++ A+ N   N ++N +     ++E    
Sbjct: 305 VIDAYSGIGTIGLSVAKHVKAVRGIEVVRDAIKDAKDNAELNGIDNAEYYLGKAEEIMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPDSL 328
             ++              +   +FVDPPR GL     DATV        I+YISCNP ++
Sbjct: 365 WAKQ------------GLKTDVVFVDPPRKGLTPEFIDATVKT--GPKKIVYISCNPATM 410

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RDL +     +  +R+   D FP T H+E   +L R
Sbjct: 411 IRDLQLFQEQGYEFDRIDPVDMFPQTPHVESVTVLER 447


>gi|33151692|ref|NP_873045.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|50401523|sp|Q7VNM5|RUMB_HAEDU RecName: Full=Putative 23S rRNA (uracil-5-)-methyltransferase RumB;
           AltName: Full=23S rRNA(M-5-U747)-methyltransferase
 gi|33147913|gb|AAP95434.1| probable RNA methyltransferase gene fragment [Haemophilus ducreyi
           35000HP]
          Length = 213

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 23/161 (14%)

Query: 213 LLELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           L +L+CG G F L  A+          +  +EI+  ++E+A  +     +NNV    + +
Sbjct: 68  LWDLFCGVGGFGLHCAKALQDQGKPVTLTGIEISAAAIESATQSAQKLALNNVTFASLDA 127

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCN 324
            +F    R++                + + V+PPR G+       +     P+++Y SCN
Sbjct: 128 AQFALKDRQQTP--------------ELVIVNPPRRGIGKDLAEFLNQLNIPYLIYSSCN 173

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +S+ +D + L T + + R+ LFD FP+T H E   LL+RK
Sbjct: 174 AESMVKDFAYL-THYQLHRVQLFDMFPHTTHYETVTLLIRK 213


>gi|172058513|ref|YP_001814973.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171991034|gb|ACB61956.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum
           255-15]
          Length = 454

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 17/162 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + GD  +++ YCG G+ SL LA+    V  +E+   +++ AR N  AN ++NV     ++
Sbjct: 303 LTGDEIVVDAYCGIGSISLSLAQKAKHVYGIEMVPQAIDDARRNAKANGIDNVSFEYGTA 362

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
           +    A+ +               +   I VDPPR G D+  +    +  P  I+Y+SCN
Sbjct: 363 ETVMPALVK------------GGIKPDVIVVDPPRKGCDEEFLRAAAEVAPKRIVYVSCN 410

Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
             +  RD  +L+   + +  +   D FP+T H+E   L VR+
Sbjct: 411 ASTQARDAKLLAELGYKLMEVTPVDMFPHTTHVESVALFVRE 452


>gi|288936340|ref|YP_003440399.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella variicola
           At-22]
 gi|288891049|gb|ADC59367.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella variicola
           At-22]
          Length = 375

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A    +Q  + +L+CG G F L  A    R+  +EIA
Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPAMRLTGIEIA 263

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR + A   ++N+    + S +F      E +  +L            + V+PP
Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEDDIPQL------------VLVNPP 308

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+       +   A P+I+Y SCN  ++  D++ L   + +ER+ LFD FP+T H E 
Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLR-GYRVERVQLFDMFPHTAHYEV 367

Query: 359 GVLLVRK 365
             LLVR+
Sbjct: 368 LTLLVRE 374


>gi|227514178|ref|ZP_03944227.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC
           14931]
 gi|227087458|gb|EEI22770.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC
           14931]
          Length = 474

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 139/355 (39%), Gaps = 60/355 (16%)

Query: 40  PIHYRMRAEFHI-WHDG---DDLY----HIMFDQQTKERMRIDYFMPGSL--------LI 83
           P  YR +A+F +   DG     LY    H + D QT         MPG++        LI
Sbjct: 145 PYGYRNKAQFQVRMQDGHVVAGLYQADSHTVVDMQT-----CAVQMPGTMKVINTLVKLI 199

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT-----LIYHRLLDDAWRECAIRL 138
             L I +        +++    +    T Q   AI+T     +  H LL        + +
Sbjct: 200 EELAIPVYNEANQSGIIKTLAVRESLATGQIQVAIITNTAKLIKKHALL--------VAI 251

Query: 139 RDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
            D L      +Q +   +       +T +   +DY+ E L      L +R    SF Q N
Sbjct: 252 EDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYITESLM----GLDFRLSARSFLQLN 307

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                 + E    A    + D L++ Y G G   L LA    +V+ +E    +V+ A  N
Sbjct: 308 PEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLSLANRVKQVIGMETIADAVQDANNN 367

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N V N +     ++E     R + +             F  + VDPPR+GLD+A + 
Sbjct: 368 ATLNGVTNARYEVGPAEELLPKWRSQGQ------------HFDALVVDPPRTGLDNALID 415

Query: 311 MV-QAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
            + Q  P    Y+SCN  +L R+L+ L  T+ +  +   D  P T   E  V LV
Sbjct: 416 TILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYIQPVDMLPQTPRCEAVVKLV 470


>gi|75909839|ref|YP_324135.1| 23S rRNA methyltransferase/RumA [Anabaena variabilis ATCC 29413]
 gi|75703564|gb|ABA23240.1| 23S rRNA m(5)U-1939 methyltransferase [Anabaena variabilis ATCC
           29413]
          Length = 460

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 21/173 (12%)

Query: 202 VLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V+ +   +QG   L++ YCG G  +L L++   + + +E+   +V+ A  N   N +NNV
Sbjct: 300 VIESQLNLQGHETLIDAYCGIGTLTLPLSKQVRQAIGLELQPEAVQQAIINAQHNGINNV 359

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-H 317
                   EF Q    E+   ++  I         + +DPPR G D   +  ++ + P  
Sbjct: 360 --------EF-QVGAVEKLLPKMGIIP------DVVLLDPPRKGCDRIVIESLLASKPAR 404

Query: 318 ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           I+Y+SC   +L RDL +L     +TI+R+   D FP T H+E    LV   SG
Sbjct: 405 IVYVSCKVATLARDLKLLCADGIYTIQRIQSADFFPQTSHVEAAAFLVLSQSG 457


>gi|332358268|gb|EGJ36096.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 463

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGGGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + +  +   D FP+T   E  V L +K S
Sbjct: 416 DLVKLSRVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452


>gi|224539551|ref|ZP_03680090.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518832|gb|EEF87937.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 476

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 28/205 (13%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNG 221
           T  G+  I+ ++E         SF Q N+    N++ +    A   G +  + +LY G G
Sbjct: 280 TFKGKDHIFEEMEGLRFKIGPKSFYQTNSEQAYNLYKIARNFAGLTGKEL-VYDLYTGTG 338

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFN 280
             +  +++   +V+ +E    ++E A+ N   N + N        K+  TQ         
Sbjct: 339 TIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDMLTQDF------- 391

Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST 337
                 I+ Y R   I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L  
Sbjct: 392 ------INQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDV 445

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            + ++ +   D FP+T H+E  VLL
Sbjct: 446 KYKVKAIQPVDMFPHTHHVENVVLL 470


>gi|309790365|ref|ZP_07684931.1| RNA methyltransferase, TrmA family [Oscillochloris trichoides DG6]
 gi|308227631|gb|EFO81293.1| RNA methyltransferase, TrmA family [Oscillochloris trichoides DG6]
          Length = 416

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 19/156 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G G+F+L LA+  D V+AVE    +V      +  N + NV+ VR ++      
Sbjct: 277 LLDAYSGVGSFALPLAKGLDAVVAVEENPTAVADGVRCLPFNGITNVEFVRGAA------ 330

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
              ER   +L+       +F    +DPPR G   A +  +   A   + YISC+P  L R
Sbjct: 331 ---ERVLPQLEG------QFDAAILDPPRRGCHPAVIEELARLAPTRLAYISCHPGILAR 381

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL ++L   + ++ +   D FP T H+EC V+++RK
Sbjct: 382 DLGAMLRIGYRLDLVQPIDLFPQTPHIEC-VVVLRK 416


>gi|282859473|ref|ZP_06268578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia
           JCVIHMP010]
 gi|282587701|gb|EFB92901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia
           JCVIHMP010]
          Length = 476

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 18/182 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N     H+ + V      + G+ L  +LY G G  +  +A+   +V+ +E    +
Sbjct: 303 SFYQTNTEQAYHLYD-VARRFANLTGEELVYDLYTGTGTIANFVAKRAKKVIGIEYVPEA 361

Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +E A+ N   N + N        K+  T++  +E              R   I  DPPR+
Sbjct: 362 IEDAKVNSEINKIQNTLFYAGDMKDILTESFVQEHG------------RPDVIITDPPRA 409

Query: 303 GLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           G+    V ++  A+P  I+Y+SCNP +  RDL++L   + +  +   D FP+T H+E  V
Sbjct: 410 GMHPDVVNVILGAHPKRIVYVSCNPATQARDLALLDVDYKVVAVQPVDMFPHTPHVENVV 469

Query: 361 LL 362
           LL
Sbjct: 470 LL 471


>gi|160879502|ref|YP_001558470.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160428168|gb|ABX41731.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
           ISDg]
          Length = 463

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + +LA    +V+ VEI   +V AAR N + N + N         EF   
Sbjct: 322 IFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLTNC--------EFIAG 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                  + LK ID    +   I +DPPR G+    +  +  Y    ++YISC P SL R
Sbjct: 374 -------DVLKVIDTIEEKPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYISCKPSSLAR 426

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL +L    + +E++   D FP T H E   LL R
Sbjct: 427 DLVVLQERGYWVEKVRCVDMFPCTVHTETVCLLNR 461


>gi|310658947|ref|YP_003936668.1| RNA methyltransferase [Clostridium sticklandii DSM 519]
 gi|308825725|emb|CBH21763.1| Uncharacterized RNA methyltransferase BCE_0363 [Clostridium
           sticklandii]
          Length = 475

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 15/151 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           ++YCG G  SL LA+    V  +EI K ++E A+ N   N++ N       ++E    + 
Sbjct: 328 DIYCGIGTISLFLAKKAKHVYGIEIVKEAIENAKKNAKRNNIENASFYAGKAEEVVPEL- 386

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332
               ++R    D+       + VDPPR G ++  +  +       I+YISCNP +L RD+
Sbjct: 387 ----YSRGITADV-------VVVDPPRKGCEEIVLDTIAKMNPKKIVYISCNPSTLARDV 435

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLL 362
             LS   + ++     D F +T H+E  +L+
Sbjct: 436 ERLSKLGYEMDVAYPVDMFSHTMHVEAIILM 466


>gi|62185452|ref|YP_220237.1| putative RNA methyltransferase [Chlamydophila abortus S26/3]
 gi|62148519|emb|CAH64290.1| putative RNA methyltransferase [Chlamydophila abortus S26/3]
          Length = 401

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 98/195 (50%), Gaps = 16/195 (8%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G + ++     SF QP       ++E         + + LL+LYCG G   ++L+++  +
Sbjct: 216 GNSAVFHVRPRSFFQPQTLQGAKIIEVAKEFMDPQRSETLLDLYCGAGTIGIMLSQYVKK 275

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VEI   ++++A+ NI  N   ++  V +   E  +   +  + +   D+ I      
Sbjct: 276 VIGVEIVPDAIDSAKENILINKKEHLMEVHL---EDVKTFCKRYQDHPSPDVAI------ 326

Query: 294 TIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD-SLCRDLSILSTTHTIERLALFDQF 350
              +DPPR G+ +  +  +++  P  I+YISCNP        S+++  + ++++   DQF
Sbjct: 327 ---IDPPRCGIQNKVLKYLIRIAPRKIIYISCNPKIQFVECYSLIAAGYRMKKVQPLDQF 383

Query: 351 PYTRHMECGVLLVRK 365
           P++ H+E  +LL R+
Sbjct: 384 PHSPHLENIILLERE 398


>gi|309389832|gb|ADO77712.1| RNA methyltransferase, TrmA family [Halanaerobium praevalens DSM
           2228]
          Length = 451

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 15/155 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + ++++ + G G+  + L+    ++  +E  K +VE A+ N   N +NN+        EF
Sbjct: 306 EAEVIDAFSGTGSIGIYLSDKAKKIYGIESLKAAVEDAQKNAELNQINNI--------EF 357

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
              M   +    LK+      + +TI  DPPR GL+  T+ ++       I+YISCNP +
Sbjct: 358 KLGMVAAKLPVLLKE-----NKIETIIFDPPRKGLNQKTIELLLENELKKIIYISCNPAT 412

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
             RDL  L   + +  +   D FP T H+E   LL
Sbjct: 413 QARDLKKLKKKYQLVEIQPVDLFPQTYHIESVALL 447


>gi|34540828|ref|NP_905307.1| RNA methyltransferase [Porphyromonas gingivalis W83]
 gi|50401491|sp|Q7MVG9|Y1095_PORGI RecName: Full=Uncharacterized RNA methyltransferase PG_1095
 gi|34397142|gb|AAQ66206.1| RNA methyltransferase, TrmA family [Porphyromonas gingivalis W83]
          Length = 465

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 22/208 (10%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221
           R+Y++E +      L ++    SF Q N+    + L  +     G+ GD L  +LY G G
Sbjct: 272 REYIEEEM----EGLKFKIGAKSFYQTNSR-QAYQLYRIAREFAGLTGDELVYDLYTGTG 326

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  +A    RV+ +E    ++E AR N   N + N        K+         +F  
Sbjct: 327 TIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFYAGDMKDILT-----NDF-- 379

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--ST 337
              I+ H  R   +  DPPR+G+ ++ +  +   A   I+Y+SCNP +  RDL++L    
Sbjct: 380 ---IEQHG-RPDVVITDPPRAGMHESVIDAILFAAPRRIVYVSCNPATQARDLALLMADG 435

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +   +    D FP+T H+E  VLLVR 
Sbjct: 436 RYRAVKSRPVDMFPHTHHVENVVLLVRN 463


>gi|319937203|ref|ZP_08011610.1| hypothetical protein HMPREF9488_02445 [Coprobacillus sp. 29_1]
 gi|319807569|gb|EFW04162.1| hypothetical protein HMPREF9488_02445 [Coprobacillus sp. 29_1]
          Length = 452

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 101/215 (46%), Gaps = 20/215 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDL 213
            +K K+     Y+++ L       IYR    SF Q N     H+ +  +  A      ++
Sbjct: 251 GDKVKVIDGPGYIEDELLGN----IYRISVKSFYQVNPKQVEHLYQKAIEFADLKPTDEV 306

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ YCG G  SL +A++  +V  VEI + ++  A+ N   NHV+NV+     + EF    
Sbjct: 307 IDAYCGIGTISLSMAKYVKKVYGVEIVEQAIIDAKENAQRNHVSNVEFTCQDAGEFMVEF 366

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRD 331
            +++     K ID+       + VDPPR G     +  +V   P  I+Y+SC+  +  RD
Sbjct: 367 AKQQ-----KHIDV-------VMVDPPRKGCSQVFLDQLVTLSPDKIIYVSCDVATQARD 414

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ L    + ++     D FP T ++E  + L +K
Sbjct: 415 IAYLQEHNYQVDICQPVDMFPQTHNIENIIRLSKK 449


>gi|290956885|ref|YP_003488067.1| tRNA methyltransferase [Streptomyces scabiei 87.22]
 gi|260646411|emb|CBG69507.1| putative tRNA methyltransferase [Streptomyces scabiei 87.22]
          Length = 433

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 23/190 (12%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA-RHFDR--VL 235
           YR     F Q +      +++ V+      +GD+ L+LYCG G F+  LA R  D+  VL
Sbjct: 253 YRVGSGGFWQVHPKAADTLVKAVMQGLLPRKGDMALDLYCGVGLFAGALADRVGDKGAVL 312

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E  K +VE AR+N+A         VR+   +    + R      ++++D+       I
Sbjct: 313 GIESGKRAVEDARHNLA-----GFDRVRIEQGKVEAVLPR----TGIEEVDL-------I 356

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPR+G    TV  + +     I Y++C+P +L RDL       + +  L  FD FP 
Sbjct: 357 VLDPPRAGAGKKTVQHMASLGARRIAYVACDPAALARDLGYFREGGYRVRMLRAFDLFPM 416

Query: 353 TRHMECGVLL 362
           T H+EC  +L
Sbjct: 417 THHVECVAIL 426


>gi|110802049|ref|YP_699391.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens SM101]
 gi|110682550|gb|ABG85920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens SM101]
          Length = 452

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 18/153 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + 
Sbjct: 311 VFDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKT 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           ++ + +                I +DPPRSG+    +  V  +  P I+Y+SCNP +L  
Sbjct: 371 VKDKPDI---------------IILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVT 415

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           DL +L +  + IE+  L D FP T H+E  V L
Sbjct: 416 DLKVLEAKGYEIEKTLLMDMFPNTPHVETVVKL 448


>gi|269977261|ref|ZP_06184234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mobiluncus mulieris
           28-1]
 gi|269934564|gb|EEZ91125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mobiluncus mulieris
           28-1]
          Length = 414

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/205 (30%), Positives = 90/205 (43%), Gaps = 16/205 (7%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
           V E + V  R   YR   +SF Q +      ++  +LA    I   ++LELY G+G FS+
Sbjct: 219 VREVVRVGAREHTYRIFASSFWQTDYRAPAVLVGELLAGVGDISDFEVLELYAGSGLFSV 278

Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            LA       R+  VE    +V++A YN+       V + R +             F R 
Sbjct: 279 FLAEAVGAAGRLTTVEGDALAVKSAGYNLKHAGFVGVSVERAAVSA---------RFLRG 329

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTH 339
            D      R   +  DPPRSGL     G +       +  ISC+P S  RDL  L    +
Sbjct: 330 VDFGQRVSRGSLVVADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGY 389

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            ++   +FD FPYT+H+E   +L R
Sbjct: 390 RLQSFRVFDLFPYTQHVEVLSVLGR 414


>gi|260662594|ref|ZP_05863489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           fermentum 28-3-CHN]
 gi|260553285|gb|EEX26228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           fermentum 28-3-CHN]
          Length = 474

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 139/355 (39%), Gaps = 60/355 (16%)

Query: 40  PIHYRMRAEFHI-WHDG---DDLY----HIMFDQQTKERMRIDYFMPGSL--------LI 83
           P  YR +A+F +   DG     LY    H + D QT         MPG++        LI
Sbjct: 145 PYGYRNKAQFQVRMQDGHVVAGLYQANSHTVVDMQT-----CAVQMPGTMKVINTLVKLI 199

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT-----LIYHRLLDDAWRECAIRL 138
             L I +        +++    +    T Q   AI+T     +  H LL        + +
Sbjct: 200 EELAIPVYNEANQSGIIKTLAVRESLATGQIQVAIITNTAKLIKKHALL--------VAI 251

Query: 139 RDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
            D L      +Q +   +       +T +   +DY+ E L      L +R    SF Q N
Sbjct: 252 EDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYITESLM----GLDFRLSARSFLQLN 307

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                 + E    A    + D L++ Y G G   L LA    +V+ +E    +V+ A  N
Sbjct: 308 PEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLSLANRVKQVIGMETIADAVQDANNN 367

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N V N +     ++E     R + +             F  + VDPPR+GLD+A + 
Sbjct: 368 ATLNGVTNARYEVGPAEELLPKWRSQGQ------------HFDALVVDPPRTGLDNALID 415

Query: 311 MV-QAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
            + Q  P    Y+SCN  +L R+L+ L  T+ +  +   D  P T   E  V LV
Sbjct: 416 TILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYIQPVDMLPQTPRCEAVVKLV 470


>gi|290510604|ref|ZP_06549974.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. 1_1_55]
 gi|289777320|gb|EFD85318.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. 1_1_55]
          Length = 375

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A    +Q  + +L+CG G F L  A    R+  +EIA
Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPAMRLTGIEIA 263

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR + A   ++N+    + S +F      E +  +L            + V+PP
Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEDDIPQL------------VLVNPP 308

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+       +   A P+I+Y SCN  ++  D++ L   + +ER+ LFD FP+T H E 
Sbjct: 309 RRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLR-GYRVERVQLFDMFPHTAHYEV 367

Query: 359 GVLLVRK 365
             LLVR+
Sbjct: 368 LTLLVRE 374


>gi|331085907|ref|ZP_08334990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406830|gb|EGG86335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 458

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 31/232 (13%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + ++++TKI   +DY  E++      L ++    SF QPN+       E 
Sbjct: 247 LHILNDSLSDVVQSDETKILYGQDYFYEKIM----GLEFKITPFSFFQPNS----RGAEV 298

Query: 202 VLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +   GD+      +L+ G G  + VLA    +V+ VEI + +VEAA+ N   N +
Sbjct: 299 LYSTVREYIGDIHDMTVYDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAERNGL 358

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315
           +N + +                F  L +I+    +   I +DPPR G+    +  +  Y 
Sbjct: 359 HNCRFIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILDYG 403

Query: 316 -PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
             +I+YISC   SL RDL ++    + + +    DQF  T H+E   LL +K
Sbjct: 404 VENIVYISCKATSLARDLEMIQARGYRVVKCTAVDQFCQTVHVETVCLLKKK 455


>gi|320158037|ref|YP_004190415.1| RNA methyltransferase, TrmA family [Vibrio vulnificus MO6-24/O]
 gi|319933349|gb|ADV88212.1| RNA methyltransferase, TrmA family [Vibrio vulnificus MO6-24/O]
          Length = 360

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A  K  Q  + +L+CG G F+L  A H ++V+ +EI 
Sbjct: 193 KSFFQTNPHVAAQLYATARDWV-AELKPRQ--MWDLFCGVGGFALHCAPHAEQVIGIEIE 249

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + ++ +A+ +     ++N++   + S  ++QA  +  +                I V+PP
Sbjct: 250 EEAINSAKLSAQQLGIDNLRFSALDSAAYSQAQTQAADL---------------ILVNPP 294

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R GL  A    ++  A  +++Y SCNP ++ +DL  L  ++ +ER   FD FP+T H E 
Sbjct: 295 RRGLGQALSEQLEQLAPQYLIYSSCNPMTMQQDLVHLP-SYQVERAQWFDMFPHTDHAEV 353

Query: 359 GVLLVRK 365
            +LLVR+
Sbjct: 354 MMLLVRQ 360


>gi|298481085|ref|ZP_06999279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22]
 gi|298272659|gb|EFI14226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22]
          Length = 472

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 26/201 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    + L  +     G+ G+ L  +LY G G  +
Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKIARNFAGLTGNELVYDLYTGTGTIA 340

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             ++R   +V+ +E    ++E A+ N   N + N        K+  TQ            
Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKDMLTQDF---------- 390

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341
            I+ H  R   I  DPPR+G+    + ++  A P  I+Y+SCNP +  RDL +L+  + +
Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLNEKYKV 448

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           + +   D FP+T H+E  VLL
Sbjct: 449 KAVQPVDMFPHTHHVENVVLL 469


>gi|55820731|ref|YP_139173.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG
           18311]
 gi|55736716|gb|AAV60358.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG
           18311]
          Length = 453

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +VE A+ N   N + N   V  S++    A
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVANSAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M +  +     D+         I VDPPR GL ++ +   V   P  I Y+SCNP ++ R
Sbjct: 365 MAKWSQDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+       + ++++   D FP T H+EC  LL R
Sbjct: 416 DIKRYQELGYELKKVQPVDLFPQTHHIECVGLLTR 450


>gi|294631901|ref|ZP_06710461.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. e14]
 gi|292835234|gb|EFF93583.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. e14]
          Length = 451

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER    GRT  +R     F Q +      +++ V+      +GD+ L+LYCG G 
Sbjct: 259 RPFVRERAD--GRT--HRVGAGGFWQVHPKAADTLVKAVMQGLLPRKGDMALDLYCGVGL 314

Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA        VL +E  K +V+ AR+N+A     +   VR+   +    + R    
Sbjct: 315 FAGALADRIGEKGAVLGIESGKRAVQDARHNLA-----DFPRVRIEQGKVESILPR---- 365

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-S 336
             + ++D+       I +DPPR+G    TV  +   A   I Y++C+P +L RDL+    
Sbjct: 366 TGITEVDL-------IVLDPPRAGAGRQTVAHLTSLAARRIAYVACDPAALARDLAYFRE 418

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + +  L  FD FP T H+EC  +L
Sbjct: 419 GGYRVRTLRAFDLFPMTHHVECVAIL 444


>gi|94988772|ref|YP_596873.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94542280|gb|ABF32329.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS9429]
          Length = 462

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 291 SFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 351 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I+YISCNP ++ RD+       + + ++   D FP T H+EC VL
Sbjct: 399 TESFIQASVAMGPQKIIYISCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVECVVL 458

Query: 362 LVRK 365
           L+++
Sbjct: 459 LIKE 462


>gi|302496741|ref|XP_003010371.1| hypothetical protein ARB_03072 [Arthroderma benhamiae CBS 112371]
 gi|291173914|gb|EFE29731.1| hypothetical protein ARB_03072 [Arthroderma benhamiae CBS 112371]
          Length = 637

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 20/159 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ YCG+G F++VL+  F   L +++A  S++ AR N   ++V N       +      
Sbjct: 485 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAAL--- 541

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+   + +   + +DPPR G D   +  + AY    +LY+SCN  +  R
Sbjct: 542 ---------FKDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 591

Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 592 DVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 630


>gi|291457698|ref|ZP_06597088.1| putative TRAM domain protein [Bifidobacterium breve DSM 20213]
 gi|291380751|gb|EFE88269.1| putative TRAM domain protein [Bifidobacterium breve DSM 20213]
          Length = 419

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 101/208 (48%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G+T  YR   N F     Q    +  H++  V    +G    ++ +LY G+G F
Sbjct: 225 EQVTINGKTFDYRVDANGFWQVHRQAPIALGTHVINQVNQQLQGAVAPVIWDLYSGSGLF 284

Query: 224 SLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 285 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 331

Query: 281 R-LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R L+ +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 332 RTLEHVPAHLAKPDIVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 391

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   +  R
Sbjct: 392 EGYELKDIRAFDIYPMTHHVETVAVFSR 419


>gi|281420423|ref|ZP_06251422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM
           18205]
 gi|281405568|gb|EFB36248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM
           18205]
          Length = 483

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N     H L  V      + GD L  +LY G G  +  +A    +V+ +E    +
Sbjct: 312 SFYQTNTEQAYH-LYCVAREFANLTGDELVYDLYTGTGTIANFVAHKAKKVIGIEYVPEA 370

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N++ N        K+               D      R   I  DPPR+G
Sbjct: 371 IEDAKVNSQVNNIENTLFYAGDMKDIL-----------TNDFIAQHGRPDVIITDPPRAG 419

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +    + ++  A P  I+Y+SCNP +  RDL ++   + +  +   D FP+T H+E  VL
Sbjct: 420 MHPDVINVILNAAPKRIVYVSCNPATQARDLQLMDAEYKVAAVQPVDMFPHTPHVENVVL 479

Query: 362 LVRK 365
           L ++
Sbjct: 480 LEKR 483


>gi|269213835|ref|ZP_06158206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria cinerea ATCC
           14685]
 gi|269145156|gb|EEZ71574.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria cinerea ATCC
           14685]
          Length = 461

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ N   N  M+   +      QG+ + +L+CG GNFSL +A+    V+ VE A+  
Sbjct: 276 GDFTQINTDTNRLMVSRAIKMLDIRQGERVADLFCGLGNFSLPIAKSGASVVGVEGAENL 335

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   N             +F  A      F+  ++      +F  + +DPPRSG
Sbjct: 336 VGRARQNARLNGCGG-------QTDFIAA----NLFDCTENTVASWGKFDKMLIDPPRSG 384

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
             +    +   Y    I+Y+SCNP +L RD  +L    + + ++ + + F +T H+E
Sbjct: 385 AYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYILGQVGIMNMFAHTSHVE 441


>gi|326331786|ref|ZP_08198074.1| putative RNA methyltransferase [Nocardioidaceae bacterium Broad-1]
 gi|325950585|gb|EGD42637.1| putative RNA methyltransferase [Nocardioidaceae bacterium Broad-1]
          Length = 399

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 26/206 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVL 227
           E + V G    +    + F Q + G    ++  VL+A + + G  +L+LY G G FS  L
Sbjct: 210 ETVEVGGAKHSFEVAADGFWQVHPGAPTALVSAVLSALEPMPGQSVLDLYAGVGLFSAFL 269

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       RV+AVE             +A  V N+    +++ +    +           
Sbjct: 270 ADEVGPSGRVVAVE--------GDQTASALSVGNLPGAEVTAGDVATVL----------- 310

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH-ILYISCNPDSLCRDLSILST-THTI 341
            D+    F  + +DPPR G   A V  V A  P  + Y++C+P +L RD++I +   + +
Sbjct: 311 ADLAEGPFDLVVLDPPREGARRAVVDAVVARSPQKVAYVACDPAALARDVAIFAEHGYRL 370

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPS 367
             L  FD FP T H+EC  LL +  S
Sbjct: 371 RTLRAFDLFPMTHHVECVALLTKAGS 396


>gi|332199324|gb|EGJ13401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA47368]
 gi|332199924|gb|EGJ13998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA47901]
          Length = 458

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|238795809|ref|ZP_04639322.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia mollaretii
           ATCC 43969]
 gi|238720272|gb|EEQ12075.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia mollaretii
           ATCC 43969]
          Length = 401

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 18/154 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    ++  +EI+  ++  AR +     + NV    + S  F  
Sbjct: 261 SMWDLFCGVGGFGLHCAGPETQLTGIEISAEAIACARQSADQLGLKNVSFAALDSTRFAT 320

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A   E +  +L            + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 321 A---EAQVPQL------------VLVNPPRRGMGAELCDYLAQMAPEFILYSSCNAETMA 365

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+S L T + IER+ LFD FP+T H E  +LL+
Sbjct: 366 KDISRL-TGYRIERVQLFDLFPHTAHYEVLILLI 398


>gi|67469205|ref|XP_650594.1| RNA methyltransferase [Entamoeba histolytica HM-1:IMSS]
 gi|56467236|gb|EAL45208.1| RNA methyltransferase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 479

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 22/213 (10%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL- 214
           +K  +    DY+ E L      L ++    SF Q N+     + + V      I+ D++ 
Sbjct: 280 DKMNVLYGNDYITEELL----GLHFKITPMSFFQTNSLGAEVLYQTVRDYITTIRCDIIF 335

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  + +L+    +++ VE+ + ++ AA+ N   N + N         EF +A  
Sbjct: 336 DLYCGTGTITQLLSPICKKIIGVELNQDAIRAAKLNAELNKLTNC--------EF-RAAD 386

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
              E ++L++      R + I +DPPR+G+    +  +  Y    I+Y+SC P +L RDL
Sbjct: 387 VNIELDQLQE-----NRPELIVLDPPRTGIHPNALSKIIKYGAQTIVYVSCMPTTLIRDL 441

Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            +L    + ++ + L D FP T H+E   LL +
Sbjct: 442 IVLEQNGYKVKNITLVDMFPNTPHVETVCLLKK 474


>gi|326473586|gb|EGD97595.1| tRNA(m5U54)methyltransferase [Trichophyton tonsurans CBS 112818]
          Length = 593

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 20/159 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ YCG+G F++VL+  F   L +++A  S++ AR N   ++V N       +      
Sbjct: 441 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAAL--- 497

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+   + +   + +DPPR G D   +  + AY    +LY+SCN  +  R
Sbjct: 498 ---------FKDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 547

Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 548 DVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 586


>gi|168494763|ref|ZP_02718906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575365|gb|EDT95893.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC3059-06]
          Length = 458

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|77164319|ref|YP_342844.1| 23S rRNA methyltransferase/RumA [Nitrosococcus oceani ATCC 19707]
 gi|91207806|sp|Q3JCY2|RUMA_NITOC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|76882633|gb|ABA57314.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrosococcus oceani ATCC
           19707]
          Length = 447

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 29/226 (12%)

Query: 148 QIQLIGRANKTKICLDRDYVD--ERLTVAGRTLIYRQ--------IENSFTQPNAGINVH 197
           Q+   G+A+K +I L     +    L  AG  L Y Q        +   FTQ N  +N  
Sbjct: 224 QLVAFGQAHKLQIYLQGGGAETVRLLWPAGARLSYSQFGKLEMIFLPTDFTQVNREVNTK 283

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           M+  VL   +   G+ +L+L+CG GNF+L LA     V+ +E     V  A  N   N +
Sbjct: 284 MVRRVLELLEIKSGERVLDLFCGIGNFTLPLAIAGAEVVGIEGNAGLVARAVANATHNRL 343

Query: 257 NNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            N   ++  ++  E+T  +     F++               +DPPRSG   A   M + 
Sbjct: 344 ENAYFEMADLNGAEWTHYVWAREGFSK-------------ALLDPPRSGALLAVQQMSKL 390

Query: 315 -YPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357
               I+Y+SCNP +L RD   L     + +    + D FP+T H+E
Sbjct: 391 RVQRIVYVSCNPATLARDAGELVNRQGYRLRYAGVIDMFPHTTHVE 436


>gi|22126722|ref|NP_670145.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis KIM 10]
 gi|45441084|ref|NP_992623.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806623|ref|YP_650539.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Antiqua]
 gi|108812805|ref|YP_648572.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Nepal516]
 gi|145599632|ref|YP_001163708.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Pestoides
           F]
 gi|149366685|ref|ZP_01888719.1| putative RNA methyltransferase [Yersinia pestis CA88-4125]
 gi|162419159|ref|YP_001606076.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Angola]
 gi|165924539|ref|ZP_02220371.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936154|ref|ZP_02224723.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009879|ref|ZP_02230777.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211303|ref|ZP_02237338.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399932|ref|ZP_02305450.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419571|ref|ZP_02311324.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423862|ref|ZP_02315615.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469043|ref|ZP_02333747.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis FV-1]
 gi|218928486|ref|YP_002346361.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis CO92]
 gi|229841295|ref|ZP_04461454.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843398|ref|ZP_04463544.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895772|ref|ZP_04510942.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Pestoides A]
 gi|229903224|ref|ZP_04518337.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Nepal516]
 gi|270487015|ref|ZP_06204089.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis KIM
           D27]
 gi|294503331|ref|YP_003567393.1| 23S rRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003]
 gi|20455400|sp|Q8ZGG1|RUMB_YERPE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|122979761|sp|Q1CAC8|RUMB_YERPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|123073272|sp|Q1CGA8|RUMB_YERPN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|167012650|sp|A4TN73|RUMB_YERPP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725417|sp|A9R4V6|RUMB_YERPG RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|21959742|gb|AAM86396.1|AE013887_3 putative enzyme [Yersinia pestis KIM 10]
 gi|45435943|gb|AAS61500.1| putative RNA methyltransferase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108776453|gb|ABG18972.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis
           Nepal516]
 gi|108778536|gb|ABG12594.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis
           Antiqua]
 gi|115347097|emb|CAL19989.1| putative RNA methyltransferase [Yersinia pestis CO92]
 gi|145211328|gb|ABP40735.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis
           Pestoides F]
 gi|149291059|gb|EDM41134.1| putative RNA methyltransferase [Yersinia pestis CA88-4125]
 gi|162351974|gb|ABX85922.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis
           Angola]
 gi|165915768|gb|EDR34376.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923599|gb|EDR40731.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991275|gb|EDR43576.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207074|gb|EDR51554.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962312|gb|EDR58333.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050640|gb|EDR62048.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056711|gb|EDR66474.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678994|gb|EEO75097.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Nepal516]
 gi|229689745|gb|EEO81806.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697661|gb|EEO87708.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700695|gb|EEO88724.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Pestoides A]
 gi|262365091|gb|ACY61648.1| 23S rRNA (uracil-5-)-methyltransferase [Yersinia pestis D182038]
 gi|270335519|gb|EFA46296.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis KIM
           D27]
 gi|294353790|gb|ADE64131.1| 23S rRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003]
 gi|320015811|gb|ADV99382.1| tRNA uracil-5--methyltransferase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 376

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    ++  +EI   ++  AR +     + NV    + S  F  
Sbjct: 236 SMWDLFCGVGGFGLHCAGPETQLTGIEINAEAIACARQSAEQLGLKNVSFAALDSTRFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A  +  E                + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 296 AEAQIPEL---------------VLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+S+L+  H IER+ LFD FP+T H E   LL 
Sbjct: 341 KDISLLAGYH-IERVQLFDMFPHTSHYEVLTLLT 373


>gi|227523883|ref|ZP_03953932.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227088903|gb|EEI24215.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC
           8290]
          Length = 472

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 154/391 (39%), Gaps = 61/391 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGD----DL 58
           Y +QL  K D ++  +  ++    + ++        +P HYR +A F I  DG      L
Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPTHYRNKATFQIRSDGQKVIAGL 167

Query: 59  Y----HIMFDQQTK--------ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106
           Y    H + D +T         + MR    M   L I     E  A I    ++RA    
Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVRA---- 223

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
                + +D+A VT I          +   R+    H     + ++   N  K  L   +
Sbjct: 224 ----ATATDEAQVTFITQSKKLLKKHQLLERID---HDLPEVVSVMQNVNPGKTSLV--W 274

Query: 167 VDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATK-GIQGDLLELY 217
            +E + +AG+  I   + N        +F Q N  +   + +    A +   +  L++ Y
Sbjct: 275 GEETIHLAGKDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAY 334

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G   L +AR    V  ++  K +V+ A  N   N + N             A+    
Sbjct: 335 SGVGTIGLSVARQVREVRGMDTIKDAVDDANANAIKNGIVN-------------ALYEVG 381

Query: 278 EFNRLKDIDIHS-YRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI 334
           E  +L  + I   +    + VDPPR+GL D+ +  +    P   +YISCNP +L RDL  
Sbjct: 382 EAEKLLPLWIEDVWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVK 441

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L+  + +E +   D  P T   EC V   +K
Sbjct: 442 LTRKYNVEYIQSVDLMPQTSRCECVVKFKKK 472


>gi|326480712|gb|EGE04722.1| tRNA (uracil-5-)-methyltransferase [Trichophyton equinum CBS
           127.97]
          Length = 593

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 20/159 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ YCG+G F++VL+  F   L +++A  S++ AR N   ++V N       +      
Sbjct: 441 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAAL--- 497

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+   + +   + +DPPR G D   +  + AY    +LY+SCN  +  R
Sbjct: 498 ---------FKDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 547

Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 548 DVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 586


>gi|306827133|ref|ZP_07460425.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304430686|gb|EFM33703.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 462

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A++N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 351 RDAQHNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC VL
Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 458

Query: 362 LVRK 365
           L+++
Sbjct: 459 LIKE 462


>gi|288554996|ref|YP_003426931.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288546156|gb|ADC50039.1| RNA methyltransferase, TrmA family [Bacillus pseudofirmus OF4]
          Length = 459

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 27/167 (16%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  +++ YCG G  SL LA+    V  VEI   ++  A+ N   N   NV      +
Sbjct: 308 LKGDETVIDAYCGIGTISLFLAQKAKHVYGVEIVPEAISDAKKNAEINGFTNVDFAVGEA 367

Query: 267 KE-----FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319
           +      + Q +R +                  I VDPPR G D+  +  +       ++
Sbjct: 368 ENVMPWWYAQGIRPD-----------------VIVVDPPRKGCDEKLLETILNMKPKRVV 410

Query: 320 YISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           Y+SCNP +L RDL +L    +  + +   D FP++ H+E    +VRK
Sbjct: 411 YVSCNPATLARDLRVLEDGGYKTKEVQPVDMFPHSTHVEVVSQIVRK 457


>gi|242241735|ref|ZP_04796180.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|242234825|gb|EES37136.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 472

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 21/218 (9%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
           ++GR + T     +D ++++L+     +IY   + SF Q N+     + +  L   +   
Sbjct: 270 IMGRQSMT--LYGKDKIEDQLS----EVIYHISDLSFYQINSSQTEKLYQQALNYAQLTG 323

Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            ++ L+ YCG G   L +A     V  VE+   +++ A  N   N + N       +++ 
Sbjct: 324 KEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDV 383

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDS 327
               + +              +   + VDPPR G D+     +++  P  I+YISCNP +
Sbjct: 384 ILTWKSQ------------GIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIIYISCNPST 431

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RD  IL+  + +  +   D FP T H+E   L VRK
Sbjct: 432 QQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 469


>gi|254433797|ref|ZP_05047305.1| 23S rRNA (uracil-5-)-methyltransferase [Nitrosococcus oceani AFC27]
 gi|207090130|gb|EDZ67401.1| 23S rRNA (uracil-5-)-methyltransferase [Nitrosococcus oceani AFC27]
          Length = 447

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 29/226 (12%)

Query: 148 QIQLIGRANKTKICLDRDYVD--ERLTVAGRTLIYRQ--------IENSFTQPNAGINVH 197
           Q+   G+A+K +I L     +    L  AG  L Y Q        +   FTQ N  +N  
Sbjct: 224 QLVAFGQAHKLQIYLQGGGAETVRLLWPAGARLSYSQFGKLEMIFLPTDFTQVNREVNTK 283

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           M+  VL   +   G+ +L+L+CG GNF+L LA     V+ +E     V  A  N   N +
Sbjct: 284 MVRRVLELLEIKSGERVLDLFCGIGNFTLPLAIAGAEVVGIEGNAGLVARAVANATHNRL 343

Query: 257 NNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            N   ++  ++  E+T  +     F++               +DPPRSG   A   M + 
Sbjct: 344 ENAYFEMADLNGAEWTHYVWAREGFSK-------------ALLDPPRSGALLAVQQMSKL 390

Query: 315 -YPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357
               I+Y+SCNP +L RD   L     + +    + D FP+T H+E
Sbjct: 391 RVQRIVYVSCNPATLARDAGELVNRQGYRLRYAGVIDMFPHTTHVE 436


>gi|218130910|ref|ZP_03459714.1| hypothetical protein BACEGG_02505 [Bacteroides eggerthii DSM 20697]
 gi|317476221|ref|ZP_07935472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987254|gb|EEC53585.1| hypothetical protein BACEGG_02505 [Bacteroides eggerthii DSM 20697]
 gi|316907632|gb|EFV29335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii
           1_2_48FAA]
          Length = 475

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 29/211 (13%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221
           T  G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G
Sbjct: 279 TFKGKDHIFEEMEGLRFKIGPKSFYQTNSE-QAYNLYKVARNFAGLTGNELVYDLYTGTG 337

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFN 280
             +  +++   +V+ +E    ++E A+ N   N + N        K+  TQ         
Sbjct: 338 TIANFVSKQARQVIGIEYVPEAIEDAKVNSEINGIQNTLFFAGDMKDMLTQDF------- 390

Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST 337
                 I+ Y R   I  DPPR+G+    + ++  A P  I+Y+SCNP +  RDL +L  
Sbjct: 391 ------INEYGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLDA 444

Query: 338 THTIERLALFDQFPYTRHMECGVLL-VRKPS 367
            + ++ +   D FP+T H+E  VLL ++ P+
Sbjct: 445 KYKVKAVQPVDMFPHTHHVENVVLLELKNPA 475


>gi|212709677|ref|ZP_03317805.1| hypothetical protein PROVALCAL_00725 [Providencia alcalifaciens DSM
           30120]
 gi|212687488|gb|EEB47016.1| hypothetical protein PROVALCAL_00725 [Providencia alcalifaciens DSM
           30120]
          Length = 375

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 21/168 (12%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           EWV A        L +L+CG G F L  A    ++  +EI+ P++E AR +     + +V
Sbjct: 227 EWVKALNIT---SLWDLFCGVGGFGLHCADKTTKLTGIEISAPAIECARQSAQELGLQHV 283

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-H 317
           +   + S  F  A  R+       DI         + V+PPR G+  +    +   +P +
Sbjct: 284 EFQALDSTNF--ATSRD-------DIP------DLVLVNPPRRGIGKNLCTYLSDMHPEY 328

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ILY SCN  ++ +D ++LS  + + ++ LFD FP+T H E   LL RK
Sbjct: 329 ILYSSCNAQTMAQDFALLS-GYQVCKVQLFDMFPHTAHYEVLSLLKRK 375


>gi|210608457|ref|ZP_03287833.1| hypothetical protein CLONEX_00012 [Clostridium nexile DSM 1787]
 gi|210153033|gb|EEA84039.1| hypothetical protein CLONEX_00012 [Clostridium nexile DSM 1787]
          Length = 546

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 45/251 (17%)

Query: 138 LRDALHARKYQIQLIG-------------RANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           L DAL A + + +++G             ++++T+I   +D+  E+L      + ++   
Sbjct: 229 LVDALLALQLEGKIVGILHILNDSLSDVVQSDETRILYGQDFFYEKLL----DMDFKITP 284

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEI 239
            SF QPN        E +    +   GD+      +L+ G G  + VLA    +V+ VEI
Sbjct: 285 FSFFQPNT----KGAEILYKTVRDYIGDIHNMTVFDLFSGTGTIAQVLAPVAKQVIGVEI 340

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            + +VEAA+ N   N ++N + +                F  L +I+    +   I +DP
Sbjct: 341 VEEAVEAAKENAEHNGLSNCRFIAGDV------------FKVLDEIE---EKPDVIVLDP 385

Query: 300 PRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356
           PR G+    +  +  Y    I+YISC   SL RDL ++    + +E+    DQF  T H+
Sbjct: 386 PRDGIHPKALPKILDYGVDKIVYISCKVTSLARDLEMIQARGYRVEKCTAVDQFCQTVHV 445

Query: 357 ECGVLLV-RKP 366
           E  VLL  +KP
Sbjct: 446 ETVVLLSQQKP 456


>gi|184154533|ref|YP_001842873.1| putative RNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|183225877|dbj|BAG26393.1| putative RNA methyltransferase [Lactobacillus fermentum IFO 3956]
          Length = 535

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 139/355 (39%), Gaps = 60/355 (16%)

Query: 40  PIHYRMRAEFHI-WHDG---DDLY----HIMFDQQTKERMRIDYFMPGSL--------LI 83
           P  YR +A+F +   DG     LY    H + D QT         MPG++        LI
Sbjct: 206 PYGYRNKAQFQVRMQDGHVVAGLYQTNSHTVVDMQT-----CAVQMPGTMKIINTLVKLI 260

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT-----LIYHRLLDDAWRECAIRL 138
             L I +        +++    +    T Q   AI+T     +  H LL        + +
Sbjct: 261 EELAIPVYNEANQSGIIKTLAVRESLATGQIQVAIITNTAKLIKKHALL--------VAI 312

Query: 139 RDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
            D L      +Q +   +       +T +   +DY+ E L      L +R    SF Q N
Sbjct: 313 EDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYITESLM----GLDFRLSARSFLQLN 368

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                 + E    A    + D L++ Y G G   L LA    +V+ +E    +V+ A  N
Sbjct: 369 PEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLSLANRVKQVIGMETIADAVQDANNN 428

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N V N +     ++E     R + +             F  + VDPPR+GLD+A + 
Sbjct: 429 ATLNGVTNARYEVGPAEELLPKWRSQGQ------------HFDALVVDPPRTGLDNALID 476

Query: 311 MV-QAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
            + Q  P    Y+SCN  +L R+L+ L  T+ +  +   D  P T   E  V LV
Sbjct: 477 TILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYIQPVDMLPQTPRCEAVVKLV 531


>gi|28895748|ref|NP_802098.1| RNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|50914416|ref|YP_060388.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|50401597|sp|Q8K722|Y1024_STRP3 RecName: Full=Uncharacterized RNA methyltransferase
           SpyM3_1024/SPs0836
 gi|73920489|sp|Q5XBK8|Y1070_STRP6 RecName: Full=Uncharacterized RNA methyltransferase M6_Spy1070
 gi|28810997|dbj|BAC63931.1| putative RNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|50903490|gb|AAT87205.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 462

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A++N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 351 RDAQHNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC VL
Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 458

Query: 362 LVRK 365
           L+++
Sbjct: 459 LIKE 462


>gi|238794845|ref|ZP_04638445.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia intermedia
           ATCC 29909]
 gi|238725788|gb|EEQ17342.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia intermedia
           ATCC 29909]
          Length = 375

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 18/154 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    ++  +EI+  ++  AR +     + NV    + S  F  
Sbjct: 236 SMWDLFCGVGGFGLHCASAETQLTGIEISAEAIACARQSAQQLGLQNVSFAALDSTCFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A   E +  +L            + V+PPR G+       + Q  P  ILY SCN  ++ 
Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAELCDYLAQMAPEFILYSSCNAQTMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+S+L+  + IER+ LFD FP+T H E  VLL 
Sbjct: 341 KDISLLAD-YRIERVQLFDMFPHTAHYEVLVLLT 373


>gi|229825365|ref|ZP_04451434.1| hypothetical protein GCWU000182_00719 [Abiotrophia defectiva ATCC
           49176]
 gi|229790737|gb|EEP26851.1| hypothetical protein GCWU000182_00719 [Abiotrophia defectiva ATCC
           49176]
          Length = 514

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 25/216 (11%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGD 212
           +A + +I   RDY++E L      L ++    SF Q N+ G  V +   V       +G+
Sbjct: 293 KAERQEILFGRDYINEELL----GLKFKITTFSFFQTNSLGAEV-LYSKVREYVGNNEGN 347

Query: 213 LL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ +LY G G    +++    +V+ +EI + +V AA  N   N + N + +     +   
Sbjct: 348 VVYDLYSGTGTIGQIISPVAKKVIGIEIVEEAVIAANENAKLNGLTNTEFLAGDVFKVLD 407

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
            ++ + +F               I +DPPR G+    +  V +Y    I+YI+C P SL 
Sbjct: 408 EVKEKPDF---------------IILDPPRDGVSPKALKRVLSYGVRDIVYIACKPTSLV 452

Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD+    +  + ++++ L D FP T H+E   LL +
Sbjct: 453 RDIPEFEAVGYRVKKVCLCDMFPETLHVETVCLLSK 488


>gi|227892264|ref|ZP_04010069.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC
           11741]
 gi|227865905|gb|EEJ73326.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC
           11741]
          Length = 456

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 16/154 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL +A+   +V  VEI   ++E A++N + N ++N+      ++ + + 
Sbjct: 312 VIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEK 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
            +++              +   I VDPPR GL  + +   V   P  I+Y+SCNP +L R
Sbjct: 372 WQKQ------------GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKIVYVSCNPATLVR 419

Query: 331 DL-SILSTTHTIER-LALFDQFPYTRHMECGVLL 362
           D+   +   + + + +   DQFP T H+E   +L
Sbjct: 420 DIQEFMELGYQVTKPIQPVDQFPQTTHVESVTVL 453


>gi|221232637|ref|YP_002511791.1| RNA methyltransferase [Streptococcus pneumoniae ATCC 700669]
 gi|307128099|ref|YP_003880130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 670-6B]
 gi|220675099|emb|CAR69679.1| putative RNA methyltransferase [Streptococcus pneumoniae ATCC
           700669]
 gi|301794862|emb|CBW37321.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104]
 gi|301800678|emb|CBW33323.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
 gi|301802595|emb|CBW35356.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
 gi|306485161|gb|ADM92030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 670-6B]
          Length = 447

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 304 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 364 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 411

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 412 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 446


>gi|149012517|ref|ZP_01833548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP19-BS75]
 gi|147763573|gb|EDK70509.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP19-BS75]
          Length = 453

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|327389062|gb|EGE87408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA04375]
          Length = 374

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 224 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 283

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + +DPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 284 WYKE------------GYRADALIIDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 331

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 332 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 366


>gi|89896511|ref|YP_519998.1| hypothetical protein DSY3765 [Desulfitobacterium hafniense Y51]
 gi|89335959|dbj|BAE85554.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 446

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 21/169 (12%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +L+W   +T+ +   + +LYCG G  +L LA    +V  +E    +VE AR N   N VN
Sbjct: 289 VLDWAELSTEKV---VWDLYCGIGTITLALAAKAKKVWGIEENPYAVEDARENAKRNRVN 345

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP 316
           NV+ +           + E  F ++ D          + +DPPR+G     + G+++  P
Sbjct: 346 NVEFM---------VGKAEDTFQQIGDSP------HIVVLDPPRAGAHRKVLEGLLELKP 390

Query: 317 -HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             I+Y+SC+  +L RDL IL +  + +  +   D FP+T  +E  +++ 
Sbjct: 391 EQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDMFPWTVSVESVIMMT 439


>gi|116618671|ref|YP_819042.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097518|gb|ABJ62669.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 464

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 21/181 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N      +  + LAA K        +++ Y G G  +L +A    ++  V++ +
Sbjct: 289 NSFYQVNPQTTSTL--YALAAEKANLKPTDVVVDAYSGIGTITLSVADKVKKIYGVDVVE 346

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            ++E A  N   N + N + V   + E         +  +  D      +   +FVDPPR
Sbjct: 347 GAIEDAEKNAKNNQITNAEFVLADAPE---------QMAKWAD---EGLKPNVVFVDPPR 394

Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYTRHME 357
            GL    +  V+A      +YISCNP +L RD + IL+    IE  +   DQFP T H+E
Sbjct: 395 KGLTQELIDAVKAMNPEKFVYISCNPATLARDAVQILAAGFEIEGAVQPLDQFPQTTHVE 454

Query: 358 C 358
            
Sbjct: 455 S 455


>gi|294636993|ref|ZP_06715315.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Edwardsiella tarda
           ATCC 23685]
 gi|291089821|gb|EFE22382.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Edwardsiella tarda
           ATCC 23685]
          Length = 355

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A   G+   + +L+CG G F L  A     +  +EI+
Sbjct: 184 QSFFQTNPAVAEALYAEARDWVRAL--GVTA-MWDLFCGVGGFGLHCATPEMALTGIEIS 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR + A   +  V    + S  F                D H    + + V+PP
Sbjct: 241 AEAIACARRSAARLGLEKVSFAALDSTAFA---------------DEHGQAPQLVLVNPP 285

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+  A    ++  A P+ILY SCN  S+ +D++ L + + I ++ LFD FP+T H E 
Sbjct: 286 RRGIGVALCDDLRRMAPPYILYSSCNAQSMAQDIACLES-YRIAKIRLFDMFPHTAHYEV 344

Query: 359 GVLLVRK 365
             LLV +
Sbjct: 345 LTLLVHQ 351


>gi|284054213|ref|ZP_06384423.1| 23S rRNA methyltransferase/RumA [Arthrospira platensis str. Paraca]
 gi|291569930|dbj|BAI92202.1| probable RNA methyltransferase [Arthrospira platensis NIES-39]
          Length = 461

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 36/203 (17%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGD--LLELYCGNGNFSLVLARHFD 232
           L +R   ++F Q    +N    E +L+A      +QG   L++ YCG G F+L LA+   
Sbjct: 275 LKFRLTADTFFQ----VNTEAAESLLSAISSELNLQGHEILVDAYCGIGTFTLPLAKQLG 330

Query: 233 --------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
                   RV+ +E    +VE A  N   N +N+V+    S K+    +           
Sbjct: 331 QNFPPKEIRVIGLESQAGAVEQAISNADLNDINHVQFRVGSVKQLLPKI----------- 379

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL--STTHT 340
                ++   + +DPPR G D   +  ++   P  I+YISC P +L RDL +L  +  + 
Sbjct: 380 ----PFKPDIVVLDPPRQGCDRTVIQTLLNLQPQRIVYISCRPVTLARDLQLLCENGIYQ 435

Query: 341 IERLALFDQFPYTRHMECGVLLV 363
           + ++   D FP T H+EC   L 
Sbjct: 436 LTKVQPVDFFPQTSHVECAAFLT 458


>gi|88802991|ref|ZP_01118518.1| tRNA (uracil-5-) -methyltransferase [Polaribacter irgensii 23-P]
 gi|88781849|gb|EAR13027.1| tRNA (uracil-5-) -methyltransferase [Polaribacter irgensii 23-P]
          Length = 485

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 18/173 (10%)

Query: 198 MLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAAN 254
           ++E+VL   TK     +++L+CG G    ++A      +++ V+I   ++E A  N   N
Sbjct: 323 VVEYVLEDKTKVDNTVVMDLFCGTGTIGQIVASKSKNAQIIGVDIVASAIEDAEKNAKRN 382

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-- 312
           ++  V+       +F  +               +  + KTI +DP R+G+   T+  +  
Sbjct: 383 NITGVQFFAADVGKFLTSHPE------------YENKIKTIILDPARAGIAPKTLQKIIN 430

Query: 313 QAYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
                ++Y+SCNP +  RD  +L    + I++++L DQFP+T H+E  VL  +
Sbjct: 431 LNADRMVYVSCNPATQARDTELLGAAGYVIKKMSLVDQFPHTAHIETVVLFEK 483


>gi|332071986|gb|EGI82473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA17570]
          Length = 462

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|329769977|ref|ZP_08261374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
           M325]
 gi|328837537|gb|EGF87164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
           M325]
          Length = 452

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 13/154 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ +CG G     ++     V  V+I   +++ A  N+  N++ N   V   + +    
Sbjct: 311 VLDAFCGVGTIGQYVSSKCKEVYGVDIVSDAIKDANDNVKLNNLTNCTYVAGDANKIVPR 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            +++               F    VDPPR GL      ++      I+Y+SCNP +L RD
Sbjct: 371 WKKK------------GINFDVAIVDPPRVGLGHLAKNLLNVDAKKIVYVSCNPSTLARD 418

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L +L+  + I R+   D FP T  +E  V L RK
Sbjct: 419 LKVLTRKYKIRRIQPVDMFPGTAAVEAVVELTRK 452


>gi|327474823|gb|EGF20228.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK408]
          Length = 469

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G   L +A+   +V  VE+   +VE +R N   N + N   V   ++E  Q 
Sbjct: 321 VLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYVCAPAEEAIQ- 379

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N LK+      +   I VDPPR GL ++ +   +   P  I YISCN  ++ R
Sbjct: 380 -------NWLKE----GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMAR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LLVR
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 463


>gi|168490112|ref|ZP_02714311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP195]
 gi|183571510|gb|EDT92038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP195]
          Length = 451

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|116327717|ref|YP_797437.1| RNA methyltransferase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331622|ref|YP_801340.1| RNA methyltransferase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120461|gb|ABJ78504.1| RNA methyltransferase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125311|gb|ABJ76582.1| RNA methyltransferase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 454

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 11/195 (5%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           V+G+   +R   +SF QPN      +L+++          L++L+CG+G FS + A  F 
Sbjct: 265 VSGKE--FRVPFDSFFQPNPEGFQPILDFIEKEIPKPSDHLIDLFCGSGFFSRIFAHKFR 322

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           ++  ++  + S+E A   ++ +    ++   +    F++     + F++L +I + S   
Sbjct: 323 KITGIDSIESSLEIAHKQMSFD-FPEIEFSYLREDLFSK-----KSFSQL-NILLQSREK 375

Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
             +  DPPR+GL +     ++        Y+SCNP S   DL  L     I+++ + D +
Sbjct: 376 NILIADPPRAGLGEFVTEALKNSKISSFFYVSCNPTSQKEDLRKLKDFFQIQKILITDPY 435

Query: 351 PYTRHMECGVLLVRK 365
           P T H+E   LL  K
Sbjct: 436 PQTPHLESVALLSSK 450


>gi|149004435|ref|ZP_01829170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP14-BS69]
 gi|147757625|gb|EDK64644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP14-BS69]
          Length = 455

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|15903759|ref|NP_359309.1| hypothetical protein spr1717 [Streptococcus pneumoniae R6]
 gi|116516423|ref|YP_817130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae D39]
 gi|148993227|ref|ZP_01822793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP9-BS68]
 gi|149007378|ref|ZP_01831021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP18-BS74]
 gi|149023453|ref|ZP_01836042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP23-BS72]
 gi|168484910|ref|ZP_02709855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1873-00]
 gi|168576690|ref|ZP_02722556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae MLV-016]
 gi|225855340|ref|YP_002736852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae JJA]
 gi|237650428|ref|ZP_04524680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822275|ref|ZP_04598120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|307068518|ref|YP_003877484.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|50401572|sp|Q8DNH6|Y1717_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr1717
 gi|50401780|sp|Q97NV8|Y1901_STRPN RecName: Full=Uncharacterized RNA methyltransferase SP_1901
 gi|15459395|gb|AAL00520.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076999|gb|ABJ54719.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae D39]
 gi|147760950|gb|EDK67919.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP18-BS74]
 gi|147928201|gb|EDK79219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP9-BS68]
 gi|147929776|gb|EDK80766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP23-BS72]
 gi|172041937|gb|EDT49983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1873-00]
 gi|183577662|gb|EDT98190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae MLV-016]
 gi|225723744|gb|ACO19597.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae JJA]
 gi|306410055|gb|ADM85482.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|332072242|gb|EGI82726.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA41301]
          Length = 451

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|315174955|gb|EFU18972.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1346]
          Length = 456

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 156/385 (40%), Gaps = 49/385 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +      +   +
Sbjct: 92  YKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQIDGQVEAGL 151

Query: 63  FDQQTKERMRIDYFM---PGSLLINALMIEMMATIRL--------EPLLRAKLFQIDYLT 111
           +   + + + ID  +   P +  +   +++++   +L          + R  + ++   T
Sbjct: 152 YQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNKFQLPIYDERKNSGIFRTLMVRVGIQT 211

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            +     +T    +      +E  +R+ +        I    +  KT + +     D+ L
Sbjct: 212 GEVQVVFIT----QSQKFPQKEKMVRVINEQLPEVVSIMQNVQNKKTSLVMG----DDTL 263

Query: 172 TVAGRTLIYRQIENSF--TQPNAGINVHMLEWVLAATKGIQG-------DLLELYCGNGN 222
            + G+  I   I +      P A   ++  +  +   +GI+         +++ YCG G 
Sbjct: 264 HLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYCGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA+   +V  ++    +++ AR+N     V N      ++++      +E      
Sbjct: 324 IGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE------ 377

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340
                  ++   I VDPPR+GLD    T  + Q    ++YISCN  +L RDL  L+  + 
Sbjct: 378 ------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLAKVYQ 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++ L   D FP T   E  V L RK
Sbjct: 432 VDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|256851520|ref|ZP_05556909.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           27-2-CHN]
 gi|260660943|ref|ZP_05861858.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           115-3-CHN]
 gi|282932756|ref|ZP_06338162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
 gi|256616582|gb|EEU21770.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           27-2-CHN]
 gi|260548665|gb|EEX24640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           115-3-CHN]
 gi|281303112|gb|EFA95308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
          Length = 458

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ + +  +V+ +E    +VE A +N+  NHV N + ++ S ++    
Sbjct: 313 LIDAYSGVGTIGIIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNTEYLQGSVEKILPQ 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
           ++     N    ID        + VDPPR+GL  + +  + Q  P   +YISCNP +L +
Sbjct: 373 LK-----NSGVPID-------ALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQ 420

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 421 DLVMLSEVYDVRVIENVDMLPQTARCEAIAKLV 453


>gi|257066487|ref|YP_003152743.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM
           20548]
 gi|256798367|gb|ACV29022.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM
           20548]
          Length = 457

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 19/184 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF QPN      + +         Q  D+L+LY G G  + V+A+       +EI + ++
Sbjct: 288 SFFQPNIYTAEKLYQKAFDLANINQSMDVLDLYSGTGTITQVMAQRARTATGIEIVEEAI 347

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A  N   N ++N+  +                 + L++I+    ++  I +DPPR+G+
Sbjct: 348 DKAWENAKINEIDNINFLCG---------------DVLEEIEKVGDKYDVIILDPPRAGI 392

Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVL 361
              ++  +        +YISCNP +   +L   ++    I+   ++DQFP +RH+E   L
Sbjct: 393 SPKSLEKILKIDTEKFIYISCNPKTQVENLKEFINQGFEIKDYEIYDQFPKSRHLEAIAL 452

Query: 362 LVRK 365
           L RK
Sbjct: 453 LTRK 456


>gi|194398750|ref|YP_002038492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae G54]
 gi|194358417|gb|ACF56865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae G54]
          Length = 451

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|225859667|ref|YP_002741177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
 gi|225721520|gb|ACO17374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
          Length = 451

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|168492125|ref|ZP_02716268.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC0288-04]
 gi|183573724|gb|EDT94252.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC0288-04]
          Length = 451

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|163788804|ref|ZP_02183249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacteriales
           bacterium ALC-1]
 gi|159876041|gb|EDP70100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacteriales
           bacterium ALC-1]
          Length = 484

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 83/158 (52%), Gaps = 17/158 (10%)

Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L+L+CG G    ++A   +  +++ V+I   ++E A+ N   N++  ++       +F 
Sbjct: 339 VLDLFCGTGTIGQIIASKANNTKIVGVDIVASAIEDAKENAKRNNIEGLQFYAADVGKF- 397

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
                      L +   ++ + +TI +DP R+G+   T+  +       ++Y+SCNP + 
Sbjct: 398 -----------LNEHPEYTNKIRTIILDPARAGIAPKTLKKIINLNADRLVYVSCNPATQ 446

Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RD   ++ + + I++++L DQFP+T H+E  VL  +K
Sbjct: 447 ARDTEQLMLSGYEIKKMSLVDQFPHTAHIETVVLFEKK 484


>gi|148985480|ref|ZP_01818669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922200|gb|EDK73321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP3-BS71]
          Length = 463

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|148998432|ref|ZP_01825873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP11-BS70]
 gi|147755625|gb|EDK62671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP11-BS70]
          Length = 451

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|15901728|ref|NP_346332.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4]
 gi|111656930|ref|ZP_01407750.1| hypothetical protein SpneT_02001826 [Streptococcus pneumoniae
           TIGR4]
 gi|14973406|gb|AAK75972.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae TIGR4]
          Length = 436

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 293 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 352

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 353 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 400

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 401 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 435


>gi|326692440|ref|ZP_08229445.1| RNA methyltransferase [Leuconostoc argentinum KCTC 3773]
          Length = 464

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 21/187 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N      +  + LAA K G++     ++ Y G G  +L +A     V  VE+ +
Sbjct: 289 NSFYQVNPQTTATL--YTLAAEKAGLKPTNIAVDAYSGIGTITLSIADKVKHVYGVEVVE 346

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A  N   N ++NV  V   + E   A   E              +   +FVDPPR
Sbjct: 347 NAVADAEQNARNNQIDNVTFVTADAPEQMVAWAAE------------GLKPNVVFVDPPR 394

Query: 302 SGLDDATVGMVQAY-PH-ILYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYTRHME 357
            GL    +  V A  P   +YISCNP +L RD + IL+    I+  +   DQFP T H+E
Sbjct: 395 KGLTAELISAVAAMAPETFVYISCNPATLARDAVQILAEGFEIDGPVQPLDQFPQTTHVE 454

Query: 358 CGVLLVR 364
              +  R
Sbjct: 455 TITVFKR 461


>gi|322831386|ref|YP_004211413.1| RNA methyltransferase, TrmA family [Rahnella sp. Y9602]
 gi|321166587|gb|ADW72286.1| RNA methyltransferase, TrmA family [Rahnella sp. Y9602]
          Length = 456

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 15/180 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +    D +L+L+CG GNF+L LA+  ++V+ VE     V 
Sbjct: 278 FIQVNDAVNQQMVAQALDWLELTPEDRVLDLFCGMGNFTLPLAKRANQVVGVEGVATLVA 337

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
             + N   N + NV                E   + +      +  F  I +DP R G  
Sbjct: 338 NGQDNARNNGLENVSFF------------HENLEDDVSKQPWAAQGFNKILLDPARGGAA 385

Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLV 363
                +V+  P  ++Y+SCNP +L RD  I L   + +  + + D FP+T H+E   L +
Sbjct: 386 GVMTHIVKLAPARVVYVSCNPTTLARDSKILLEAGYRLAGVRMLDMFPHTGHLESMALFI 445


>gi|289578813|ref|YP_003477440.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
           Ab9]
 gi|289528526|gb|ADD02878.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
           Ab9]
          Length = 453

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++YCG G  SL  A+    V  +E    +VE A+ N   N + NV+ +         +
Sbjct: 309 VIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFI---------S 359

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + E+    L D  +   +   + +DPPR G D   +  +V   P  I+Y+SCNP +L R
Sbjct: 360 GQAEKVMPELVDKGV---KADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLAR 416

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L    +    +   D FPYT H+E   L+  K
Sbjct: 417 DLRYLDDKGYKTMEVQPVDMFPYTHHVESVCLITNK 452


>gi|114567733|ref|YP_754887.1| tRNA (uracil-5-) -methyltransferase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338668|gb|ABI69516.1| tRNA (uracil-5-) -methyltransferase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 419

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 26/187 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q N      M+  +L+        +L+ +CG G+ +L LAR  +RV+ VE  +P++
Sbjct: 249 GAFFQVNHCQAEEMIRLILSLVDFSGKTVLDAFCGVGSIALNLARQAERVIGVESYEPAI 308

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD-IDIHSYRFKTIFVDPPRSG 303
             AR N     + NV        EF      ER   R+ + ID+       I +DPPRSG
Sbjct: 309 HDARSNAIEAGIYNV--------EFIHGF-CERVVARIDEPIDV-------IVLDPPRSG 352

Query: 304 LDDATVGMVQAYP-----HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
                  ++QA        I+Y+SCNP +L RDL++     +    +   D FP T H+E
Sbjct: 353 CKKE---LIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQPIDMFPRTYHVE 409

Query: 358 CGVLLVR 364
             VL+ R
Sbjct: 410 TVVLMSR 416


>gi|182684846|ref|YP_001836592.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14]
 gi|225857490|ref|YP_002739001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae P1031]
 gi|303253868|ref|ZP_07339992.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
 gi|303260797|ref|ZP_07346751.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|303267661|ref|ZP_07353494.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS457]
 gi|182630180|gb|ACB91128.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae
           CGSP14]
 gi|225725197|gb|ACO21049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae P1031]
 gi|302599173|gb|EFL66195.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
 gi|302638058|gb|EFL68539.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|302642802|gb|EFL73116.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS457]
          Length = 451

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|297545033|ref|YP_003677335.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842808|gb|ADH61324.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 453

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++YCG G  SL  A+    V  +E    +VE A+ N   N + NV+ +         +
Sbjct: 309 VIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFI---------S 359

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + E+    L D  +   +   + +DPPR G D   +  +V   P  I+Y+SCNP +L R
Sbjct: 360 GQAEKVMPELVDKGV---KADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLAR 416

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L    +    +   D FPYT H+E   L+  K
Sbjct: 417 DLRYLDDKGYKTMEVQPVDMFPYTHHVESVCLITNK 452


>gi|188585106|ref|YP_001916651.1| RNA methyltransferase, TrmA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349793|gb|ACB84063.1| RNA methyltransferase, TrmA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 454

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 16/165 (9%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L   KG++ +++++YCG G  SL+ A +  +V+ +EIA+ +V+ A  N   N   N    
Sbjct: 299 LCKLKGVE-NVMDIYCGIGTISLLAAENASKVVGIEIAEEAVKDANINKNINGQENA--- 354

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320
                 F QA   + +   +    I  Y  + + +DPPR G D+  +  +       I Y
Sbjct: 355 -----WFYQARAEDEKTESI----IQDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAY 405

Query: 321 ISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +SCNP +L RD+  ++   +  E     D FP T H+E   +L +
Sbjct: 406 VSCNPATLARDVGKLIEFGYYPELFQPVDMFPQTTHIEVICILTK 450


>gi|163813943|ref|ZP_02205337.1| hypothetical protein COPEUT_00096 [Coprococcus eutactus ATCC 27759]
 gi|158450813|gb|EDP27808.1| hypothetical protein COPEUT_00096 [Coprococcus eutactus ATCC 27759]
          Length = 457

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + +LA    +V+ VEI + +V AAR N   N ++N + +     +    
Sbjct: 317 IFDLYSGTGTIAQLLAPVAKKVIGVEIVEEAVAAARVNAKLNGLDNCEFIAGDVLKVIDE 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           +  + +F               I +DPPR G++   +  +  Y    ++YISC P SL R
Sbjct: 377 IEEKPDF---------------IVLDPPRDGINPKALTKIINYGVNELVYISCKPTSLAR 421

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L    + + +    DQFP T H+E  V + R
Sbjct: 422 DLVTLQENGYYVTKACAVDQFPGTVHVETIVKMQR 456


>gi|328869968|gb|EGG18343.1| 23S rRNA (Uracil-5-)-methyltransferase [Dictyostelium fasciculatum]
          Length = 1231

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 18/194 (9%)

Query: 187  FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            F Q NA  N  M++ VL        D   +LYCG GNF++ +A+    V+  E+++  + 
Sbjct: 1041 FMQVNANANTVMVQKVLDYLNLNPSDNCYDLYCGVGNFTIPMAKKAGSVIGFELSQELLT 1100

Query: 246  AARYNIAANHVNNV--KIVRMSSKEFTQ---------AMRREREFNRLKDIDIHS--YRF 292
               +N+   H+NNV  K+  +    FT+         A+    +  + +   I +   R 
Sbjct: 1101 KLIHNV---HLNNVKGKVQAVLCNLFTEDIPFCGNDVALENGVDATQQQQQQIENTPMRI 1157

Query: 293  KTIFVDPPRSGLDDATVGMVQAYPHILYISCNPD-SLCRDLSILSTTHTIERLALFDQFP 351
              I +DPPRSG       +      I+Y+SC P+ SL +DL +LS  + ++ + L D F 
Sbjct: 1158 NKIVLDPPRSGAQKICRSIPPGLDCIVYVSCGPETSLVKDLLLLSPNYQVKEIKLLDMFA 1217

Query: 352  YTRHMECGVLLVRK 365
             T  ME    L+ K
Sbjct: 1218 QTSKMEAIAYLIPK 1231


>gi|328861344|gb|EGG10447.1| hypothetical protein MELLADRAFT_33671 [Melampsora larici-populina
           98AG31]
          Length = 422

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 15/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+ LA  F + + +E++  S+  A++N   N + NV+ +   ++     
Sbjct: 280 LVDAYCGSGLFSIGLADQFTKSMGIEVSSESIYWAKHNAKLNKIENVEFMVGKAEAI--- 336

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                      D++  + +  T+ +DPPR G D+  +  +  +    ILY+SCN  +  R
Sbjct: 337 ---------FADLNFPA-QMTTVIIDPPRKGCDEVFLDQLLDFKPKRILYVSCNVHTQAR 386

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D+  L   + ++ +   D FP + H E  V L
Sbjct: 387 DVGRLGKVYKVQSIRGADFFPQSHHCESIVSL 418


>gi|307706544|ref|ZP_07643351.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           SK321]
 gi|307617999|gb|EFN97159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           SK321]
          Length = 451

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 416 DIKLYQELGYDLKKVQPVDLFPQTHHVECVALLVK 450


>gi|297206333|ref|ZP_06923728.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii
           JV-V16]
 gi|297149459|gb|EFH29757.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii
           JV-V16]
          Length = 458

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ + +  +V+ +E    +VE A +N+  NHV N + ++ S ++    
Sbjct: 313 LIDAYSGVGTIGIIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNTEYLQGSVEKILPQ 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
           ++     N    ID        + VDPPR+GL  + +  + Q  P   +YISCNP +L +
Sbjct: 373 LK-----NSGVPID-------ALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQ 420

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 421 DLVMLSEVYDVRVIENVDMLPQTARCEAIAKLV 453


>gi|196234487|ref|ZP_03133312.1| putative RNA methyltransferase [Chthoniobacter flavus Ellin428]
 gi|196221468|gb|EDY16013.1| putative RNA methyltransferase [Chthoniobacter flavus Ellin428]
          Length = 150

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 18/163 (11%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A +G +G L++ Y G G F+  LA  F++V+ +E    +VE+AR                
Sbjct: 4   AVRG-KGVLVDAYSGAGLFARALADRFEKVVGIEENFAAVESARR--------------- 47

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYIS 322
           S++     +  E   +  + + +H     T+ +DPP  GL      +V   A   ++Y+S
Sbjct: 48  SAQPHESYIAGEVGAHLGEVLSVHDAAQTTLLLDPPTEGLAARVCDLVLGGAPAEVIYVS 107

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CNP +L RDL++L +++ +  +   D FP T  +E  V LVRK
Sbjct: 108 CNPATLARDLALLRSSYELLSVTPLDMFPQTAEIEVVVHLVRK 150


>gi|21910560|ref|NP_664828.1| TrmA family RNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|21904760|gb|AAM79631.1| putative RNA methyltransferase, TrmA family [Streptococcus pyogenes
           MGAS315]
          Length = 409

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 238 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 297

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A++N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 298 RDAQHNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 345

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC VL
Sbjct: 346 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 405

Query: 362 LVRK 365
           L+++
Sbjct: 406 LIKE 409


>gi|160944108|ref|ZP_02091338.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444784|gb|EDP21788.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii
           M21/2]
          Length = 458

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   L +A     ++ VEI   ++E+A+ N A          R    +  QA
Sbjct: 310 LLDLYCGMGTIGLSMAGQCRELIGVEIVPEAIESAKANAARMGEAVAAKSRFFCADAGQA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
             +        DI         + +DPPR G D+AT+  V   A   ++Y+SCNP +  R
Sbjct: 370 ATQLAAEGLHPDI---------VMLDPPRKGCDEATLSAVVRMAPRRVVYVSCNPATAAR 420

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D + L    +  E++   D FP T+H+E  V   R
Sbjct: 421 DAAWLEQNGYHAEKVQPVDLFPRTKHVEACVCYTR 455


>gi|149921243|ref|ZP_01909699.1| RNA methyltransferase [Plesiocystis pacifica SIR-1]
 gi|149817903|gb|EDM77365.1| RNA methyltransferase [Plesiocystis pacifica SIR-1]
          Length = 482

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 32/216 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK--GIQG 211
           R  + ++ + R +++  L   G T    Q   +F+Q  A  N +++E V A  +  G   
Sbjct: 250 RGGRERVGVGRTHLE--LDGDGPTPPVSQGPFTFSQAQAAQNRNLVEHVAARVRESGRDA 307

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVE-----IAKPSVEAARYNIAANHVNNVKIVRMSS 266
            +LEL+ G GNFS VLAR    V AV+     IA     A R+ +  N            
Sbjct: 308 RVLELHAGVGNFSRVLARSAKAVWAVDGDREAIANLQRTAERWGLRIN------------ 355

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCN 324
                  +R +    L  +     R+  + +DPPRSG+ +A     +      ++Y+SC+
Sbjct: 356 ------AKRGQAERLLAKLATSGRRYDVVVLDPPRSGIGEAAARDLLSVVRDRVVYVSCD 409

Query: 325 PDSLCRDLSILSTTHTIERLA---LFDQFPYTRHME 357
           P +L RDL++L    +   LA   +FD  P T  +E
Sbjct: 410 PATLARDLAVLLAEGSGLELADLRVFDMMPMTPEVE 445


>gi|145340698|ref|XP_001415457.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575680|gb|ABO93749.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 536

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-----IVRMSSK 267
           +L+L+CG G   L +A    RV+  E+   +V+ A+ N   N++ N K     + R++  
Sbjct: 375 VLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAELNNITNAKFYRVDLARLNPS 434

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325
           +  + +    +   L   DI       +  DP R G+D A + +++      I+Y+SCNP
Sbjct: 435 KGPKGLLTTPKGKELPMPDI-------VITDPARPGMDSALIAILRTIGARRIVYVSCNP 487

Query: 326 DSLCRDLSILST--------THTIERLALFDQFPYTRHMECGVLLVRK 365
            +  RDL +L+          + ++ +   D FP+T H+E   +L RK
Sbjct: 488 ATQARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESVAVLERK 535


>gi|67923770|ref|ZP_00517234.1| tRNA (uracil-5-)-methyltransferase/TrmA [Crocosphaera watsonii WH
           8501]
 gi|67854397|gb|EAM49692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Crocosphaera watsonii WH
           8501]
          Length = 455

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 21/154 (13%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           ++  L++ YCG G F+L LA+   + + +E  + S+  A  N   N ++N+K        
Sbjct: 308 VEKTLIDAYCGVGTFTLPLAQKVAQAVGIENNQNSITQAENNAKINGIDNIKF------- 360

Query: 269 FTQAMRREREF-NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325
           +T  +     F N   DI         + +DPPR G D + +  ++    P I+YISC P
Sbjct: 361 YTGNVENILPFLNIFPDI---------VVLDPPRKGCDRSVIDTLRKINPPLIIYISCQP 411

Query: 326 DSLCRDLSILSTT--HTIERLALFDQFPYTRHME 357
            +L RDL  L     + +E +   D FP T H+E
Sbjct: 412 STLARDLKKLCQEDLYKVESIQPIDFFPQTPHVE 445


>gi|329118081|ref|ZP_08246793.1| 23S rRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465741|gb|EGF12014.1| 23S rRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 452

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ NA +N  M+   +       GD + +L+CG GNF+L LA+   +V+ VE +   
Sbjct: 280 GDFTQANAAVNNIMVRRAVDMLDPAHGDKIADLFCGLGNFTLPLAQSGAQVVGVEGSPAL 339

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A  N   N      +    +  F    R+ R +   ++ D        + +DPPR+G
Sbjct: 340 VRRAAGNARLNGFGG-NVSFEVANLFKTGGRQSRIW---QNAD-------KLLIDPPRAG 388

Query: 304 LDD--ATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
             +   ++G+ +    I+Y+SCNP +  RD ++L    +  + L L + FP T H+E
Sbjct: 389 AYEIVKSLGLSRQPDRIVYVSCNPATFARDAAVLVDKGYKFKLLGLVNLFPQTEHVE 445


>gi|325662109|ref|ZP_08150727.1| hypothetical protein HMPREF0490_01465 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471558|gb|EGC74778.1| hypothetical protein HMPREF0490_01465 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 459

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 31/231 (13%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + ++++TKI   +DY  E++      L ++    SF QPN+       E 
Sbjct: 247 LHILNDSLSDVVQSDETKILYGQDYFYEKIM----GLEFKITPFSFFQPNS----RGAEV 298

Query: 202 VLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +   GD+      +L+ G G  + VLA    +V+ VEI + +VEAA+ N   N +
Sbjct: 299 LYSTVREYIGDIHDMTVYDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAERNGL 358

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY- 315
           +N + +                F  L +I+    +   I +DPPR G+    +  +  Y 
Sbjct: 359 HNCRFIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILDYG 403

Query: 316 -PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
             +I+YISC   SL RDL ++    + + +    DQF  T H+E  VL+ +
Sbjct: 404 VENIVYISCKATSLARDLEMIQARGYRVVKCTAVDQFCQTVHVETVVLMSK 454


>gi|288803297|ref|ZP_06408730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
           melaninogenica D18]
 gi|288334117|gb|EFC72559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
           melaninogenica D18]
          Length = 474

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N     H+   V      + G+ L  +LY G G  +  +A+   +V+ +E    +
Sbjct: 303 SFYQTNTEQAYHLYS-VAREFANLTGNELVYDLYTGTGTIANFVAKKAQKVIGIEYVPEA 361

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N ++N        K+              +D      R   I  DPPR+G
Sbjct: 362 IEDAKVNSEVNKIDNTLFYAGDMKDILT-----------EDFISEHGRPDVIITDPPRAG 410

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +    V ++  A P  I+Y+SCNP +  RDL++L   + +  +   D FP T H+E  VL
Sbjct: 411 MHPDVVNVILGASPKRIVYVSCNPATQARDLALLDADYKVSAVQPVDMFPQTPHVENVVL 470

Query: 362 LVRK 365
           L ++
Sbjct: 471 LEKR 474


>gi|170016553|ref|YP_001727472.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20]
 gi|169803410|gb|ACA82028.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20]
          Length = 498

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 19/205 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           +DY++E  TV G+T  ++    +F Q N      +    L+A      D L++ Y G G 
Sbjct: 309 KDYIEE--TVMGKT--FQLSPRAFMQLNHTQMTVVYNEALSALNLTHADKLVDAYAGVGT 364

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA     V  +EI   +V+ A  N   NH++N K    +++      + E      
Sbjct: 365 IGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYEVGTAEVLFPKWQAE------ 418

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340
                  +    + VDPPR+GLD A    +++  P   +YISCN  +L RDL  L+  + 
Sbjct: 419 ------GWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDLVDLTKAYK 472

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++ +   D FP T   E  V L R+
Sbjct: 473 VDYIQSIDMFPQTARWEGVVKLTRR 497


>gi|269797777|ref|YP_003311677.1| RNA methyltransferase, TrmA family [Veillonella parvula DSM 2008]
 gi|269094406|gb|ACZ24397.1| RNA methyltransferase, TrmA family [Veillonella parvula DSM 2008]
          Length = 457

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 154/386 (39%), Gaps = 56/386 (14%)

Query: 10  YEQQLAEKVDRLRQMM--LAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDL---YHI 61
           YE QL+ K  +++ ++  +A Q P+L    +    P  YR + +  +     D+   ++ 
Sbjct: 92  YEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRNKMQMPVGGTKGDIQMGFYA 151

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M      +         G+ +I     ++           AK F I+     + + ++  
Sbjct: 152 MGSHDIVQGTNCPIQDEGNNIIAQACYQI-----------AKEFDIEPYDEHTGKGVLRH 200

Query: 122 IYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------------ANKTKICLDRD--- 165
           +  R+    W    +   + L H  K+  +L  R              +T + L      
Sbjct: 201 VIGRIGQSGWMIILVTATEHLPHQEKWVEKLTERVPQVETIVHNVNGKRTNVILGPKNSV 260

Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT--KGIQGDLLELYCGNGN 222
            Y D  +T   + L +    +SF Q N      + +  LA    KG +  +++ YCG G 
Sbjct: 261 LYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTE-IVIDAYCGTGT 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREFNR 281
            SL LA     V+ +EI +P++  AR N   N  +N + IV  ++ E  +  +       
Sbjct: 320 ISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFIVADAAVEIPKLYKA------ 373

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSILS-TT 338
                    R   I  DP R+G  +   T         I+Y+SCNP ++ RD+ IL+   
Sbjct: 374 -------GVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHYG 426

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + ++ +   D FP T H+E   LL R
Sbjct: 427 YELKEVQPVDMFPMTAHVEAVALLTR 452


>gi|262406440|ref|ZP_06082989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_22]
 gi|294643718|ref|ZP_06721518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
           CC 2a]
 gi|294807326|ref|ZP_06766138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
           xylanisolvens SD CC 1b]
 gi|262355143|gb|EEZ04234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_22]
 gi|292640956|gb|EFF59174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
           CC 2a]
 gi|294445456|gb|EFG14111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 472

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 26/201 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    + L  +     G+ G+ L  +LY G G  +
Sbjct: 282 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKIARNFAGLTGNELVYDLYTGTGTIA 340

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             ++R   +V+ +E    ++E A+ N   N + N        K+  TQ            
Sbjct: 341 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKDMLTQDF---------- 390

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341
            I+ H  R   I  DPPR+G+    + ++  A P  I+Y+SCNP +  RDL +L   + +
Sbjct: 391 -INQHG-RPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 448

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           + +   D FP+T H+E  VLL
Sbjct: 449 KAVQPVDMFPHTHHVENVVLL 469


>gi|257791001|ref|YP_003181607.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243]
 gi|317488284|ref|ZP_07946850.1| hypothetical protein HMPREF1023_00548 [Eggerthella sp. 1_3_56FAA]
 gi|325830894|ref|ZP_08164278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
 gi|257474898|gb|ACV55218.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243]
 gi|316912624|gb|EFV34167.1| hypothetical protein HMPREF1023_00548 [Eggerthella sp. 1_3_56FAA]
 gi|325487301|gb|EGC89744.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
          Length = 461

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 84/185 (45%), Gaps = 30/185 (16%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG--------DLL--ELYCGNGNFSLVLARHFDRVL 235
           SF Q N      ++  V+    G  G        DLL  +LY G G FS+ LA+    VL
Sbjct: 286 SFFQVNTAQAEKLIACVIEGLGGRMGEDGPEGLDDLLIADLYAGGGTFSVPLAQAGAEVL 345

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AVE A  SV   R N   N V +++++   +          RE   L  +D        +
Sbjct: 346 AVEAAGSSVRDLRRNADMNRV-DLEVIGGDAA---------RELPELGGLD-------AL 388

Query: 296 FVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352
            VDPPR+GL D  V  +  A P  + Y+SCNP +  RD++   S  + +  +   D FP 
Sbjct: 389 VVDPPRAGLADGVVESIAAAAPERVAYVSCNPATWARDVARFESQGYRLTSVQPVDMFPQ 448

Query: 353 TRHME 357
           T H+E
Sbjct: 449 TYHVE 453


>gi|134094485|ref|YP_001099560.1| 23S rRNA 5-methyluridine methyltransferase [Herminiimonas
           arsenicoxydans]
 gi|133738388|emb|CAL61433.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Herminiimonas
           arsenicoxydans]
          Length = 461

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 114/267 (42%), Gaps = 26/267 (9%)

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ--IQLIGRANKTKIC 161
           L QI+    Q +Q  +T +  R++     E  ++L+      K Q  +Q  G  +  +  
Sbjct: 189 LPQIELAIGQGEQDKITALVLRIMAPLSAEDDVKLKAFADEYKVQWWLQPAGPDSAYQFY 248

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
            + + +   L   G  + ++  +  FTQ N  IN  ++   L        D + +L+CG 
Sbjct: 249 PEDENLHYSLPEFGIKMPFKPTD--FTQVNHQINRVLVARALRLLDAQATDRIADLFCGL 306

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNF+L +A     V+ +E +    E A  N  AN +               A      F 
Sbjct: 307 GNFTLPIATQAGEVVGIEGSTTLTERALENAVANGLAG-----------KTAFYSRNLFE 355

Query: 281 RLKDIDIHSYRFKTIFVDPPRSG---LDDATVGMVQAYP-----HILYISCNPDSLCRDL 332
              D  I   +F  + +DPPR G   + +A  G+    P      I+Y+SCNP +L RD 
Sbjct: 356 AKTDDFIALGKFDRMLIDPPRDGALAVCEALAGLNAVRPDLLPSRIVYVSCNPSTLARDA 415

Query: 333 SIL--STTHTIERLALFDQFPYTRHME 357
           ++L     + ++   + + FP+T H+E
Sbjct: 416 AVLVNEGPYVLKNAGVVNMFPHTSHVE 442


>gi|270292218|ref|ZP_06198433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M143]
 gi|270279746|gb|EFA25588.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M143]
          Length = 456

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFANKVKSLRGMDIIPEAIEDAKQNAQRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYQE------------GYRANALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + ++ +   D FP+T   E  V L++K
Sbjct: 416 DLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLIKK 450


>gi|110800984|ref|YP_694814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens ATCC 13124]
 gi|110675631|gb|ABG84618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens ATCC 13124]
          Length = 455

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ + YCG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+    
Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L 
Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNINAKKIVYVSCDPSTLG 418

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL+IL      T+E +   D FP T H+E    L++K
Sbjct: 419 RDLAILEENGYKTLE-VQPVDMFPNTSHVENVAKLIKK 455


>gi|296132411|ref|YP_003639658.1| RNA methyltransferase, TrmA family [Thermincola sp. JR]
 gi|296030989|gb|ADG81757.1| RNA methyltransferase, TrmA family [Thermincola potens JR]
          Length = 457

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LYCG G  +L LA+  ++V+ +E+ + +V  A  N   N + N + +          
Sbjct: 312 VLDLYCGIGTIALYLAQFTEKVIGLEVHEAAVADAAANARINGIGNAEFI---------- 361

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPH-ILYISCNPDSLCR 330
               R  +RL  +     +   + VDPPR G+D  A   +    P  I+Y+SC+  S+ R
Sbjct: 362 --VGRAEDRLPKLAAQGVKADVVVVDPPRKGVDKRALQAICDIGPERIVYVSCDSASMAR 419

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL+ L    + +  +   D FP T H+EC  LL RK
Sbjct: 420 DLAFLRHRGYGVREIQPVDMFPQTHHVECVALLKRK 455


>gi|300214964|gb|ADJ79380.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus salivarius CECT
           5713]
          Length = 456

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 16/154 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL +A+   +V  VEI   ++E A++N + N ++N+      ++ + + 
Sbjct: 312 VIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEK 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
            +++              +   I VDPPR GL  + +   V   P  ++Y+SCNP +L R
Sbjct: 372 WQKQ------------GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVR 419

Query: 331 DL-SILSTTHTIER-LALFDQFPYTRHMECGVLL 362
           D+   +   + + + +   DQFP T H+E   +L
Sbjct: 420 DIQEFMELGYQVTKPIQPVDQFPQTTHVESVTVL 453


>gi|237714574|ref|ZP_04545055.1| RNA methyltransferase [Bacteroides sp. D1]
 gi|229445343|gb|EEO51134.1| RNA methyltransferase [Bacteroides sp. D1]
          Length = 462

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 26/201 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    + L  +     G+ G+ L  +LY G G  +
Sbjct: 272 GKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYNLYKIARNFAGLTGNELVYDLYTGTGTIA 330

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             ++R   +V+ +E    ++E A+ N   N + N        K+  TQ            
Sbjct: 331 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKDMLTQDF---------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341
            I+ H  R   I  DPPR+G+    + ++  A P  I+Y+SCNP +  RDL +L   + +
Sbjct: 381 -INQHG-RPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLDEKYKV 438

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           + +   D FP+T H+E  VLL
Sbjct: 439 KAVQPVDMFPHTHHVENVVLL 459


>gi|293364145|ref|ZP_06610872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
 gi|291317323|gb|EFE57749.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
          Length = 454

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFANKVKSLRGMDIIPEAIEDAKRNAQRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             ++             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYKD------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + ++ +   D FP+T   E  V LVRK
Sbjct: 416 DLVRLVKVYDLQYIQSVDMFPHTARTEAVVKLVRK 450


>gi|228478261|ref|ZP_04062869.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
 gi|228249940|gb|EEK09210.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
          Length = 452

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +VE A+ N   N + N   V  S++    A
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNADRNGITNAHYVADSAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M +  +     D+         I VDPPR GL ++ +   V   P  I Y+SCNP ++ R
Sbjct: 365 MAKWSKDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LL ++
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVCLLEKR 451


>gi|15613250|ref|NP_241553.1| RNA methyltransferase [Bacillus halodurans C-125]
 gi|50401684|sp|Q9KF10|Y687_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0687
 gi|10173301|dbj|BAB04406.1| RNA methyltransferase [Bacillus halodurans C-125]
          Length = 458

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 25/158 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE---- 268
           +++ YCG G  SL LA+    V  VEI   ++  A+ N   N   NV+     +++    
Sbjct: 314 VIDAYCGIGTISLFLAQQAKHVYGVEIVPEAISDAKRNARLNGFANVQFAVGDAEKVMPW 373

Query: 269 -FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNP 325
            + Q +R +                  I VDPPR G D+A +  +    P  ++Y+SCNP
Sbjct: 374 WYAQGVRAD-----------------VIVVDPPRKGCDEALLKTILNMKPDRVVYVSCNP 416

Query: 326 DSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
            +L RDL +L    +  + +   D FP+T H+E   +L
Sbjct: 417 ATLARDLRVLEDGGYETKDVQPVDMFPWTTHIESVAVL 454


>gi|295102269|emb|CBK99814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii L2-6]
          Length = 384

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L  +    +V+ VE+ + +V  A  N  A H N VK  R  + + T  
Sbjct: 240 VLDAYCGIGTIGLTASDKARQVVGVEVNRDAVRDAIGN--AKH-NGVKNARFFAADATAW 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           +R   +  +  D+         IF+DPPR G   A +  V   A   I+Y+SCNP+++ R
Sbjct: 297 IREAADAGQKADV---------IFMDPPREGSTPAFLESVARMAPKRIVYVSCNPETMAR 347

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL++L+   +  E     D FP++ H E    LVR
Sbjct: 348 DLALLTQKGYRAEGFTPVDMFPHSAHCEVVGSLVR 382


>gi|116627537|ref|YP_820156.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
           LMD-9]
 gi|116100814|gb|ABJ65960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           thermophilus LMD-9]
 gi|312278056|gb|ADQ62713.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
           thermophilus ND03]
          Length = 453

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +VE A+ N   N + N   V  S++    A
Sbjct: 308 VIDAYSGIGTIGLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVANSAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M +  +     D+         I VDPPR GL ++ +   V   P  I Y+SCNP ++ R
Sbjct: 365 MAKWSQDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+       + ++++   D FP T H+EC  LL R
Sbjct: 416 DIKRYQELGYELKKVQPVDLFPQTHHIECVGLLTR 450


>gi|330718855|ref|ZP_08313455.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
           fallax KCTC 3537]
          Length = 465

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 28/191 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N       + + LAA K     Q  +++ Y G G  +L +A    +V  VEI +
Sbjct: 291 NSFYQVNP--QTTSVLYQLAADKAQLKPQDVVVDAYSGIGTITLSIANRVKKVYGVEIVQ 348

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A+ N   N ++NV  +   + E            ++        +   +FVDPPR
Sbjct: 349 QAVVDAQLNAKNNQISNVSFIAKDAPE------------QMAQWAAEGLKPDVVFVDPPR 396

Query: 302 SGLDDATVGMVQAYPHI-----LYISCNPDSLCRDLS--ILSTTHTIERLALFDQFPYTR 354
            GL   T  +++A  ++     +YISCNP +L RD +  I +  H    +   DQFP T 
Sbjct: 397 KGL---TEDLIEAISNMDTKTFVYISCNPATLARDAAQIIAAGYHIDGDIQPLDQFPQTT 453

Query: 355 HMECGVLLVRK 365
           H+E  V + RK
Sbjct: 454 HVET-VAVFRK 463


>gi|325970639|ref|YP_004246830.1| (uracil-5)-methyltransferase [Spirochaeta sp. Buddy]
 gi|324025877|gb|ADY12636.1| (Uracil-5)-methyltransferase [Spirochaeta sp. Buddy]
          Length = 383

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 30/237 (12%)

Query: 133 ECAIRLRDALHARKYQ-IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           E A RL  A H  K   +++   A++ +I L    +D+ +++   +  +      F Q N
Sbjct: 171 EAARRLMFANHGGKTDYLEVPAFASEDEISL----LDKEISITVGSKRFFVTSEVFFQSN 226

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   + ++V  A++ I   +++LY G G FS  LA+   R++AVE  K  +      +
Sbjct: 227 HFLTASLGDYV--ASQAIGQTVMDLYSGVGTFSAFLAQPLRRLIAVEKQKQCIA-----L 279

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A  H+   +        FT A+     + + + I +      T+ VDPPR+GL++    +
Sbjct: 280 AKKHLTGCEF-------FTDAVEL---WAKRQAIAV-----DTVVVDPPRTGLEETVPSL 324

Query: 312 VQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++    ++Y+SCN  +L RDL    S  +T   + +FD +P T H E  V+L R+
Sbjct: 325 IASWAPKRVIYVSCNSVTLARDLQRFASEGYTTTTVKMFDLYPQTFHHEVVVVLDRR 381


>gi|315052774|ref|XP_003175761.1| hypothetical protein MGYG_03282 [Arthroderma gypseum CBS 118893]
 gi|311341076|gb|EFR00279.1| hypothetical protein MGYG_03282 [Arthroderma gypseum CBS 118893]
          Length = 595

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 20/159 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ YCG+G F++VL+  F   L +++A  S++ AR N   + V N       +      
Sbjct: 443 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSKVPNTGFAAADAAAL--- 499

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+   + +   + +DPPR G D   +  + AY    +LY+SCN  +  R
Sbjct: 500 ---------FKDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 549

Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 550 DVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 588


>gi|304410535|ref|ZP_07392153.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS183]
 gi|307304628|ref|ZP_07584378.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           BA175]
 gi|304351019|gb|EFM15419.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS183]
 gi|306912030|gb|EFN42454.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           BA175]
          Length = 390

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV   +      L +L+CG G F L  A     +  +EI 
Sbjct: 221 KSFFQTNPQVAAQLYQTAREWVAEFSPR---SLWDLFCGVGGFGLHCASKDITLTGIEIE 277

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     + NV+ + + S +F +                 + +   I V+PP
Sbjct: 278 AEAIACAQMSAQMMGLENVQFMALDSTDFAKGKSA-------------ADKPDLIIVNPP 324

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ +A    +  +    ILY SCNP +L +DL  +   H + ++ LFD FP+T H E 
Sbjct: 325 RRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHTDHFEV 383

Query: 359 GVLLVR 364
            V+LV+
Sbjct: 384 LVMLVK 389


>gi|325832711|ref|ZP_08165474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
 gi|325485850|gb|EGC88311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
          Length = 525

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 83/194 (42%), Gaps = 19/194 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR-V 234
           L +R    SF Q NA +   +L        G  G    ++ YCG G   LV A+   R V
Sbjct: 249 LSFRISSQSFYQVNA-VQTEVLYERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQV 307

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + V+    +V  AR N   N V N +     +  F   MR         D+         
Sbjct: 308 IGVDTVASAVRDARENAKHNGVENARFAVGDAGAF---MRERAAAGDAVDV--------- 355

Query: 295 IFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
           + +DPPR+G  +      +  A   I+YISCNP +  RDL+ L    + +  +   D FP
Sbjct: 356 LLMDPPRAGSSEEFLAAAVTLAPRRIVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFP 415

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   LL RK
Sbjct: 416 HTDHIETVALLSRK 429


>gi|288928551|ref|ZP_06422398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288331385|gb|EFC69969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 479

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N     H+ E     A   G +  + +LY G G  +  +AR   +V+ VE    +
Sbjct: 307 SFYQTNTQQAYHLYEVARRFANLSGTE-IVYDLYTGTGTIANFVARQAKKVVGVEYVPEA 365

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +  A+ N   N + N        K+               D   ++ +   I  DPPR+G
Sbjct: 366 IADAKVNSELNGIGNTTFYAGDMKDILN-----------DDFIANNGQPDVIITDPPRAG 414

Query: 304 LD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +  D    +++A P  I+Y+SCNP +  RDL  L   + +  +   D FP+T H+E  VL
Sbjct: 415 MHADVIETIIRANPQRIVYVSCNPATQARDLIALDERYAVTAVQPVDMFPHTPHVENVVL 474

Query: 362 LVRK 365
           L R+
Sbjct: 475 LERR 478


>gi|295836075|ref|ZP_06823008.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. SPB74]
 gi|197695167|gb|EDY42100.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. SPB74]
          Length = 447

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 24/161 (14%)

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  LA        VL +E +K +VE AR+N+A     +   VR+   +  
Sbjct: 302 LDLYCGVGLFAGALADRVGEKGAVLGIETSKRAVEDARHNLA-----DFPRVRVEQGKVD 356

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSL 328
           Q + R      + + D+       I +DPPR+G   +TV  +    P  I YI+C+P +L
Sbjct: 357 QILPR----TGITETDL-------IVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAAL 405

Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
            RDL       + +  L  FD FP T+H EC  +L  +P+G
Sbjct: 406 SRDLKHFAENGYRVRVLRAFDLFPMTQHFECVAIL--EPAG 444


>gi|189463386|ref|ZP_03012171.1| hypothetical protein BACCOP_04105 [Bacteroides coprocola DSM 17136]
 gi|189429815|gb|EDU98799.1| hypothetical protein BACCOP_04105 [Bacteroides coprocola DSM 17136]
          Length = 489

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 18/185 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+    + L  V     G+ G+ L  +LY G G  +  ++R   +V+ +E    +
Sbjct: 318 SFYQTNSE-QAYNLYKVARNFAGLTGNELVYDLYTGTGTIANFVSRQARKVIGIEYVPEA 376

Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +E A+ N   N + N        K+  TQ             I+ H  R   I  DPPR+
Sbjct: 377 IEDAKVNSQINGIENTLFYAGDMKDILTQDF-----------INEHG-RPDVIITDPPRA 424

Query: 303 GLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           G+ +  + ++  A P  I+Y+SCNP +  RDL +L   + +  +   D FP+T H+E  V
Sbjct: 425 GMHNDVIDVILFAEPKRIVYVSCNPATQARDLQLLDAKYKVMAVQPVDMFPHTHHVENVV 484

Query: 361 LLVRK 365
           LL ++
Sbjct: 485 LLEKR 489


>gi|189501475|ref|YP_001957192.1| TrmA family RNA methyltransferase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189496916|gb|ACE05463.1| RNA methyltransferase, TrmA family [Candidatus Amoebophilus
           asiaticus 5a2]
          Length = 468

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 18/184 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+     +L   +A    +QG  L  +LY G G  +  LAR   +V+ +E+ + +
Sbjct: 296 SFFQTNS-TQAKVLYQTVADLANLQGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESA 354

Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++ A+ N   N ++NV       K+ F + + +E              R   I  DPPR+
Sbjct: 355 IKDAQINAQLNQLSNVSFWLGDMKDIFNEELLKE------------CGRPDIIVTDPPRA 402

Query: 303 GL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           G+  D    ++Q  P  I+Y+SCNP +  RD+  L   + +      D FP+T H+E   
Sbjct: 403 GMHPDVVQQLLQVAPEKIIYVSCNPATQARDIHDLQDRYVLTHAQPIDMFPHTSHVENVA 462

Query: 361 LLVR 364
           +LV+
Sbjct: 463 VLVK 466


>gi|313674919|ref|YP_004052915.1| 23S rRNA m(5)u-1939 methyltransferase [Marivirga tractuosa DSM
           4126]
 gi|312941617|gb|ADR20807.1| 23S rRNA m(5)U-1939 methyltransferase [Marivirga tractuosa DSM
           4126]
          Length = 466

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 16/181 (8%)

Query: 186 SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+     ++ +    A  KG +  + +LY G G  +  LA+   +V+ VE    +
Sbjct: 295 SFYQTNSDQAYELYKVARDFANLKG-EETVYDLYTGTGTIANFLAKSAKKVIGVEYVTEA 353

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A+ N   N + N +      K+          FN   +  +   +   I  DPPR+G
Sbjct: 354 IEDAKVNSKLNEIENTEFFSGDMKDV---------FN--DEFLVEHGKADVIITDPPRAG 402

Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +    +  +       I+Y+SCNP +  RDL++L   + + ++   D FP T H+E  VL
Sbjct: 403 MHPDVIKTLLNIGAEKIVYVSCNPATQARDLALLDEKYKVTKVQPVDMFPQTHHVENVVL 462

Query: 362 L 362
           L
Sbjct: 463 L 463


>gi|282900616|ref|ZP_06308558.1| 23S rRNA methyltransferase/RumA [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194416|gb|EFA69371.1| 23S rRNA methyltransferase/RumA [Cylindrospermopsis raciborskii
           CS-505]
          Length = 455

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 21/169 (12%)

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V+ +   +QGD  L++ YCG G  +L LA+   + + +EI   +VE A YN   N + N 
Sbjct: 302 VIQSQLNLQGDEILVDAYCGIGTLTLPLAKQARQTIGLEIQPAAVEQAIYNAQHNGITNA 361

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-H 317
           K    + ++         + + L DI         + +DPPR G +   +  +++  P  
Sbjct: 362 KFQIGAVEDILP------KLDTLPDI---------VLLDPPRKGCEPIVLQSLLKLKPKK 406

Query: 318 ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           I YISC   +L RDLS+L  S  + ++++   D FP T H+E    L R
Sbjct: 407 IAYISCKASTLARDLSLLCASGEYKLKKVQPADFFPQTPHVETVAFLER 455


>gi|294461082|gb|ADE76108.1| unknown [Picea sitchensis]
          Length = 575

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 30/211 (14%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNF 223
           +  +T   R L++    NSF Q N       L  ++     ++GD    +L+L+CG G  
Sbjct: 376 NSTITECLRGLVFEISANSFFQTNT-YQAEKLYQLIEEAANLRGDGSEIVLDLFCGTGTI 434

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA+    V   E+   +V  AR N   N + N K +             E + N++ 
Sbjct: 435 GLTLAKKVKNVYGYEVVPQAVADARRNAERNDIQNAKFI-------------EGDLNKIG 481

Query: 284 DIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-------- 332
           D   + +    I + DP R G+    +  +       I+Y+SCNP +  RDL        
Sbjct: 482 DDFGNEFPCPDIVITDPNRPGMHTKLIRFLLKLRASRIIYVSCNPATCARDLDYLCHGLP 541

Query: 333 -SILSTTHTIERLALFDQFPYTRHMECGVLL 362
            S +   + ++ +   D FP+T H+EC  LL
Sbjct: 542 ESNMPGAYQLKGVQPVDMFPHTPHIECVCLL 572


>gi|56459913|ref|YP_155194.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Idiomarina loihiensis
           L2TR]
 gi|56178923|gb|AAV81645.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Idiomarina loihiensis
           L2TR]
          Length = 450

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 107/250 (42%), Gaps = 37/250 (14%)

Query: 136 IRLRDALHARKYQ-IQLIGRANKTKICLDRDYVDERLTVA---------GRTLIYRQIEN 185
           +R+ +AL     Q +Q     NKT I L  +   + L  A         G  L ++    
Sbjct: 215 LRITEALPGDAMQALQEWQTVNKTNIWLQSENDLQPLAGAAMPFDTSIDGDKLYFQ--PG 272

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q N GIN  M++  +   K  +   + + + G GNFSL LAR    VLAVE      
Sbjct: 273 DFLQVNGGINQRMVQQAMDWLKPEKTQRVYDFFAGIGNFSLPLARRAQSVLAVEGVYRMA 332

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E  R N  +N ++N+  +     E T +     +  +  D+           +DP R G 
Sbjct: 333 EQTRINAESNGMDNLSSLSADLNEITAS-----DLGKPADL---------WCLDPARPGA 378

Query: 305 DDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-----THTIERLALFDQFPYTR 354
           +     + +  P      ILY+SC PD+L RD++ + T      + I  L+  D FP T 
Sbjct: 379 EGVVKLLHKLKPEHRPQRILYVSCAPDTLARDIAGMLTESKGCNYRIIGLSTVDMFPQTH 438

Query: 355 HMECGVLLVR 364
           H+E  V L R
Sbjct: 439 HIETMVCLER 448


>gi|29377186|ref|NP_816340.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227554196|ref|ZP_03984243.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22]
 gi|257090896|ref|ZP_05585257.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis
           CH188]
 gi|257420102|ref|ZP_05597096.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
 gi|312902534|ref|ZP_07761740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|50401756|sp|Q830R6|Y2706_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_2706
 gi|29344652|gb|AAO82410.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
 gi|227176695|gb|EEI57667.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22]
 gi|256999708|gb|EEU86228.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis
           CH188]
 gi|257161930|gb|EEU91890.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
 gi|310634204|gb|EFQ17487.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|315573827|gb|EFU86018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309B]
 gi|315580263|gb|EFU92454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309A]
          Length = 456

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|183602485|ref|ZP_02963851.1| hypothetical RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683201|ref|YP_002469584.1| deoxyribonuclease/rho motif-related TRAM [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241191161|ref|YP_002968555.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196567|ref|YP_002970122.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218404|gb|EDT89049.1| hypothetical RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620851|gb|ACL29008.1| deoxyribonuclease/rho motif-related TRAM [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249553|gb|ACS46493.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251121|gb|ACS48060.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177269|gb|ADC84515.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794154|gb|ADG33689.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis V9]
          Length = 436

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 33/243 (13%)

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           LR A+  R Y I + G+       L      E + V G+   Y      F Q +    + 
Sbjct: 211 LRKAI-GRNYAIMVDGKVRHGSRALK-----ETIMVDGKPFEYTVDAGGFWQMHREAPMV 264

Query: 198 MLEWVLAATKGIQGD----------LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSV 244
           + ++V+   +   GD          + +LY G+G F+L LA   D   +++++E AK +V
Sbjct: 265 LPQYVIDQIRETPGDRAPRNGRNLVIWDLYSGSGLFTLPLATLLDDRAKLVSIEGAKDAV 324

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             AR N+           R +     QA+  +      KDID        + +DPPR+G 
Sbjct: 325 ANARRNL-----------RNAGIHTVQALCGDVLHTLDKDIDPQRAHPDIVVLDPPRAGA 373

Query: 305 DDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
                  +     P ++YI+C+P SL RD + L+   + I  +A FD +P T H+E   +
Sbjct: 374 KAKVCHKIANSGAPIVVYIACDPASLARDTATLTEHGYRIHSIAAFDIYPQTHHVETVAV 433

Query: 362 LVR 364
            V+
Sbjct: 434 FVK 436


>gi|255974885|ref|ZP_05425471.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2]
 gi|256616789|ref|ZP_05473635.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC
           4200]
 gi|256854009|ref|ZP_05559374.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256961043|ref|ZP_05565214.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           Merz96]
 gi|257081727|ref|ZP_05576088.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol]
 gi|293384567|ref|ZP_06630433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|293386796|ref|ZP_06631367.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|307278742|ref|ZP_07559809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|307290285|ref|ZP_07570201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|312906393|ref|ZP_07765401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|312979448|ref|ZP_07791136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
 gi|255967757|gb|EET98379.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2]
 gi|256596316|gb|EEU15492.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC
           4200]
 gi|256710952|gb|EEU25995.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256951539|gb|EEU68171.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           Merz96]
 gi|256989757|gb|EEU77059.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol]
 gi|291078113|gb|EFE15477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|291083799|gb|EFE20762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|306498706|gb|EFM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|306504603|gb|EFM73806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|310627547|gb|EFQ10830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|311287819|gb|EFQ66375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
 gi|315030469|gb|EFT42401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4000]
 gi|315032560|gb|EFT44492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0017]
 gi|315170491|gb|EFU14508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1342]
          Length = 456

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|219667634|ref|YP_002458069.1| RNA methyltransferase, TrmA family [Desulfitobacterium hafniense
           DCB-2]
 gi|219537894|gb|ACL19633.1| RNA methyltransferase, TrmA family [Desulfitobacterium hafniense
           DCB-2]
          Length = 446

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 21/169 (12%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +L+W   +T+ +   + +LYCG G  +L LA    +V  +E    +VE AR N   N VN
Sbjct: 289 VLDWAELSTEKV---VWDLYCGIGTITLALAAKAKKVWGIEENPYAVEDARENAKRNRVN 345

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP 316
           NV+ +           + E  F ++ D          + +DPPR+G     + G+++  P
Sbjct: 346 NVEFM---------VGKAEDTFQQIGDYP------HIVVLDPPRAGAHRKVLEGLLELKP 390

Query: 317 -HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             I+Y+SC+  +L RDL IL +  + +  +   D FP+T  +E  +++ 
Sbjct: 391 EQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDMFPWTVSVESIIVMT 439


>gi|307276947|ref|ZP_07558057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
 gi|306506370|gb|EFM75530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
          Length = 456

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|315162126|gb|EFU06143.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0645]
 gi|315168692|gb|EFU12709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1341]
          Length = 456

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|311280257|ref|YP_003942488.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacter cloacae
           SCF1]
 gi|308749452|gb|ADO49204.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacter cloacae
           SCF1]
          Length = 376

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A     +  +EIA  ++  A+ + A   + N++   + S +F   
Sbjct: 237 MWDLFCGVGGFGLHCATPAMTLTGIEIAPEAIACAKQSAAELGLTNLRFQALDSTQFAVG 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                                 + V+PPR G+ +A    +   A  +I+Y SCN  S+ +
Sbjct: 297 QGEAPGL---------------VLVNPPRRGIGEALCAYLDRMAPDYIVYSSCNAQSMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D++ L   + IER+ LFD FP+T H E   LLVR+
Sbjct: 342 DIARLPH-YRIERVQLFDMFPHTAHYEVLTLLVRE 375


>gi|127511735|ref|YP_001092932.1| 23S rRNA methyluridine methyltransferase [Shewanella loihica PV-4]
 gi|167012646|sp|A3QB25|RUMB_SHELP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|126637030|gb|ABO22673.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella loihica
           PV-4]
          Length = 379

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG G F L  A     +  +EI   ++  A+ +     ++ V+   + S  F    R
Sbjct: 239 DLFCGVGGFGLHCASKEVALTGIEIEAEAIACAKMSAETLGLDKVRFTALDSTSFASDSR 298

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
            E              + + I V+PPR G+ +A    +  +    ILY SCNP +L +DL
Sbjct: 299 GEE-------------KPELIIVNPPRRGIGEALCHSLSEFAPKAILYSSCNPKTLAKDL 345

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             +S  + + ++ LFD FP+T H E  V+L R
Sbjct: 346 HCIS-GYRVTKVQLFDMFPHTDHFEVLVMLQR 376


>gi|300114883|ref|YP_003761458.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299540820|gb|ADJ29137.1| RNA methyltransferase, TrmA family [Nitrosococcus watsonii C-113]
          Length = 446

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 106/234 (45%), Gaps = 31/234 (13%)

Query: 148 QIQLIGRANKTKICLDRDYVD--ERLTVAGRTLIYRQ--------IENSFTQPNAGINVH 197
           Q+   G+A+K +I L     +    L  A   L Y Q        +   FTQ N  +N  
Sbjct: 223 QLMAFGQAHKLQIYLQGGGAETVRLLWPAEARLSYSQFGELEMIFLPTDFTQVNREVNTK 282

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           M++ VLA  +   G+ +L+L+CG GNF+L LA     V+ +E     V  AR N A N +
Sbjct: 283 MVQQVLALLEIASGERVLDLFCGVGNFTLPLAMAGAEVVGIEGDAGLVARARANAAHNRL 342

Query: 257 NNVK--IVRMSSKEFT-QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            NV+  +  ++  E+T  A  RE               F    +DPPRSG   A   M +
Sbjct: 343 ENVRFDVADLNGLEWTHHAWARE--------------GFSKALLDPPRSGALLAVQQMSK 388

Query: 314 A-YPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGVLLVR 364
                I+YISCNP +L RD   L     + +    + D FP+T H+E   L  R
Sbjct: 389 LRVQRIVYISCNPATLARDAGELVNRQGYRLRYAGVIDMFPHTTHVETLALFER 442


>gi|302656253|ref|XP_003019882.1| hypothetical protein TRV_06080 [Trichophyton verrucosum HKI 0517]
 gi|291183655|gb|EFE39258.1| hypothetical protein TRV_06080 [Trichophyton verrucosum HKI 0517]
          Length = 544

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 20/159 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ YCG+G F++VL+  F   L +++A  S++ AR N   ++V N       +      
Sbjct: 392 LLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAAL--- 448

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+   + +   + +DPPR G D   +  + AY    +LY+SCN  +  R
Sbjct: 449 ---------FKDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQAR 498

Query: 331 DLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 499 DVGVLVEGKNGIRYDIESIRGFDFFPQTSHVESVAVLTK 537


>gi|225861693|ref|YP_002743202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229216|ref|ZP_06962897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255172|ref|ZP_06978758.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298503634|ref|YP_003725574.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727633|gb|ACO23484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298239229|gb|ADI70360.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 451

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + +DPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIIDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V L++K
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|76799178|ref|ZP_00781359.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           18RS21]
 gi|76585471|gb|EAO62048.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           18RS21]
          Length = 252

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 14/156 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           DL++ YCG G   L  A     V  ++I   +++ A+ N       N            +
Sbjct: 108 DLIDAYCGVGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHY---------E 158

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
           A + E    R        +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L 
Sbjct: 159 AGKAEDIIPRWYS---EGFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLA 215

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL  L+  + +  +   D FP+T   E  V L RK
Sbjct: 216 RDLVTLTKVYHVHYIQSVDMFPHTARTEAVVKLQRK 251


>gi|282862383|ref|ZP_06271445.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces sp. ACTE]
 gi|282562722|gb|EFB68262.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces sp. ACTE]
          Length = 447

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 22/155 (14%)

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  + +       VL +E  K +VE AR+N+      ++  VR+   +  
Sbjct: 302 LDLYCGVGLFAGAIGQRIGEKGAVLGIESGKRAVEDARHNL-----KDLDRVRIEHGKVD 356

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           Q + R      + + D+       I +DPPR+G   ATV  +       I Y++C+P +L
Sbjct: 357 QVLPR----TGITECDL-------IVLDPPRAGAGKATVKHLSGLGARRIAYVACDPAAL 405

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
            RDL+      + +  L  FD FP T H+EC  +L
Sbjct: 406 ARDLAYFRDGGYKVRTLRAFDLFPMTHHVECVAIL 440


>gi|260770022|ref|ZP_05878955.1| RNA methyltransferase TrmA family [Vibrio furnissii CIP 102972]
 gi|260615360|gb|EEX40546.1| RNA methyltransferase TrmA family [Vibrio furnissii CIP 102972]
          Length = 377

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L  A     V  +EI   ++ +A+ + +A  ++N+    + S +F+  
Sbjct: 238 MWDLFCGVGGFALHCASLTTAVTGIEIEPEAIASAKRSASAMGIDNLSFAALDSAQFSLG 297

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                +                + V+PPR GL DA    +   A  HI+Y SCNP ++  
Sbjct: 298 QDVAPDL---------------VLVNPPRRGLGDALTQQLAMLAPKHIIYSSCNPLTMKN 342

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L+    + +L  FD FP+T H E  +LL R
Sbjct: 343 DVEQLTDYRAV-KLQWFDMFPHTEHAEVLLLLER 375


>gi|327535927|gb|AEA94761.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
           OG1RF]
          Length = 456

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|291614756|ref|YP_003524913.1| RNA methyltransferase, TrmA family [Sideroxydans lithotrophicus
           ES-1]
 gi|291584868|gb|ADE12526.1| RNA methyltransferase, TrmA family [Sideroxydans lithotrophicus
           ES-1]
          Length = 432

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 25/225 (11%)

Query: 144 ARKYQIQLIGRANKTKIC-----LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
           A K+Q+Q   +    +       LD   +   L   G T+ +   E  FTQ N+ +N  M
Sbjct: 215 ADKHQVQFWTQTKGPETVAPFYPLDAPSLSYSLPEFGITMPFAPTE--FTQVNSDMNRLM 272

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +   +       G+ + + +CG GNF+L +AR   +VL +E +   V  AR N   N ++
Sbjct: 273 VSRAMRLLAPQAGERIADFFCGLGNFTLPIARSGAQVLGIEGSDALVRRARQNAEYNGLS 332

Query: 258 -NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQA 314
            N     M+  E  +A                + RF    VDPPR G  +   ++    A
Sbjct: 333 GNTTFQMMNLFEMDEATL------------ARAGRFDKWLVDPPRDGAIELMKSISEATA 380

Query: 315 YPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
              I+Y+SC+P +L RD  +L  +  ++++   + + FP T H+E
Sbjct: 381 PRRIVYVSCSPSTLSRDAEVLVHAKGYSLKAAGVMNMFPQTSHVE 425


>gi|166033314|ref|ZP_02236143.1| hypothetical protein DORFOR_03040 [Dorea formicigenerans ATCC
           27755]
 gi|166027671|gb|EDR46428.1| hypothetical protein DORFOR_03040 [Dorea formicigenerans ATCC
           27755]
          Length = 461

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 29/232 (12%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E + ++   LH +   +  + +   T++   +DY  E L      L ++    SF Q N+
Sbjct: 242 ELSGKIVGILHTKNDSLADVVKDEGTEVLFGQDYFYEELL----GLKFKITPFSFFQTNS 297

Query: 193 -GINV---HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            G  V      E++    + +   + +LY G G  + +LA    +V+ VEI + +VEAA+
Sbjct: 298 LGAEVLYEKAREYIGDTNEKV---VFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAK 354

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   N ++N              ++   E   + D+         I +DPPR G++   
Sbjct: 355 VNAKLNGLDNCTFWA------GDVLKVIDELGEVPDL---------IMLDPPRDGVNPKA 399

Query: 309 VGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           +  +  +    ++YI+C P SL RDL ++    + +E++A  D FP T H+E
Sbjct: 400 LMKILNFGVDRLVYIACKPTSLARDLEMIQGRGYKVEKIACVDLFPNTVHVE 451


>gi|116617569|ref|YP_817940.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096416|gb|ABJ61567.1| 23S rRNA m(5)U-1939 methyltransferase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 463

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 21/181 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N      + +  LAA K        +++ Y G G   + +A    +VL VE+  
Sbjct: 290 NSFYQVNPQTTEVLYD--LAAQKADLKPTDTVIDAYSGIGTIGISVASRVKKVLGVEVVP 347

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A+ N+  N+++N + +   +           +F + ++      +   +FVDPPR
Sbjct: 348 GAVADAQLNLQVNNISNAEYILADAP---------VQFKKWQE---QGLKPDVVFVDPPR 395

Query: 302 SGLDDATV-GMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL-FDQFPYTRHME 357
            GL  + + G     P  I+YISCNP +L RD + I+   + I+   L  DQFP T H+E
Sbjct: 396 RGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVEIIENGYHIDGSVLPVDQFPQTSHVE 455

Query: 358 C 358
            
Sbjct: 456 S 456


>gi|229544908|ref|ZP_04433633.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322]
 gi|229309800|gb|EEN75787.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322]
 gi|295113655|emb|CBL32292.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76]
          Length = 456

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|229549174|ref|ZP_04437899.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|255971891|ref|ZP_05422477.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1]
 gi|256957937|ref|ZP_05562108.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5]
 gi|257079874|ref|ZP_05574235.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1]
 gi|257421676|ref|ZP_05598666.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|294780400|ref|ZP_06745766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
 gi|300860697|ref|ZP_07106784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TUSoD Ef11]
 gi|307269643|ref|ZP_07550978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|312953733|ref|ZP_07772567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|229305411|gb|EEN71407.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|255962909|gb|EET95385.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1]
 gi|256948433|gb|EEU65065.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5]
 gi|256987904|gb|EEU75206.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1]
 gi|257163500|gb|EEU93460.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|294452500|gb|EFG20936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
 gi|300849736|gb|EFK77486.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TUSoD Ef11]
 gi|306514033|gb|EFM82620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|310628360|gb|EFQ11643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|315035082|gb|EFT47014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0027]
 gi|315148672|gb|EFT92688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4244]
 gi|315151812|gb|EFT95828.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0031]
 gi|315155574|gb|EFT99590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0043]
 gi|315159336|gb|EFU03353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0312]
 gi|323481633|gb|ADX81072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           62]
 gi|329570604|gb|EGG52323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1467]
          Length = 456

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|149372775|ref|ZP_01891796.1| putative RNA methyltransferase [unidentified eubacterium SCB49]
 gi|149354472|gb|EDM43037.1| putative RNA methyltransferase [unidentified eubacterium SCB49]
          Length = 469

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 15/162 (9%)

Query: 208 GIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+ L  +LY G G  +  +A+   +V+ VE    ++ AA+ N   N++ N +     
Sbjct: 319 GLTGEELVYDLYTGTGTIAQFVAKKAKKVIGVESVPDAIIAAKENAERNNITNAEFYVGD 378

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
            K+          FN    ++ H  +   +  DPPR G+    V  +     P I+Y+SC
Sbjct: 379 MKDV---------FNE-DFVNTHG-KADIVITDPPRDGMHKDVVQQLINLNAPKIVYVSC 427

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           N  +  RDL++L   + + ++   D FP T H+E  VLL R+
Sbjct: 428 NSATQARDLALLDENYKVTKVQPVDMFPQTHHVENVVLLERR 469


>gi|315143898|gb|EFT87914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2141]
          Length = 456

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|313890778|ref|ZP_07824403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120879|gb|EFR43993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 453

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 15/158 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+   +V  VE+ + +V+ AR N   N + N + +  S++   + 
Sbjct: 308 VIDAYSGIGTIGLSFAKKVKKVYGVEVIEAAVKDARKNAERNGIRNAEFLVGSAEAAMEK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ +      A   I Y+SCNP ++ R
Sbjct: 368 WSKE------------GIKPSVILVDPPRKGLTESFIKASAAMAPKKITYVSCNPATMAR 415

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           D+       + + +    D FP+T H+EC  L+ R  S
Sbjct: 416 DIKHYQELGYNLIKAQPVDLFPHTHHVECIALIQRVKS 453


>gi|257416880|ref|ZP_05593874.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           AR01/DG]
 gi|257158708|gb|EEU88668.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           ARO1/DG]
          Length = 456

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|150019658|ref|YP_001311912.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
 gi|149906123|gb|ABR36956.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB
           8052]
          Length = 459

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 163/392 (41%), Gaps = 49/392 (12%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMM-----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           TL+   Y+ QL  K +R++  +     L+  +    I    P  YR +  + I    ++L
Sbjct: 82  TLMHSNYDSQLKFKYNRVKDCIERIGGLSGDIVKNTIGMEFPYRYRNKGIYSIALTDNEL 141

Query: 59  YHIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS--- 112
               F ++T E + +D  +     +  I  ++   M    + P  +  LF  + L     
Sbjct: 142 SMGFFSEKTHEVVDMDKCLIQDEETDKIIKIIRNWMKKYSILPARKDNLFFSEGLIRNVM 201

Query: 113 -----QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
                ++++ +V LI          E    +R  +   K  IQ I   N + +  D+   
Sbjct: 202 VRNGFKTNEIMVVLITTDKEIPKKEELIKDIRLEVENLKGVIQNISTKNNSLVLGDK--- 258

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217
              +T+ G+  I   I          SF Q N  I   +L         + GD  + + Y
Sbjct: 259 --CITLWGQDYISDYIGKYKFNISPLSFFQINP-IQTEVLYNKALEYADLSGDEIVFDAY 315

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L L+++  +V  VEI + +++ A  N   N ++N +     S+E    + +  
Sbjct: 316 CGAGTITLFLSQNARKVYGVEIVEQAIDNAIDNAEINGIDNSEFYVGKSEEVIPELIK-- 373

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL 335
                     +  +   I VDPPR G D   +  + +A P  ++Y+SC+P +L RDL  L
Sbjct: 374 ----------NGIKPDIIVVDPPRKGCDIKLLNAIGEAKPKRVVYVSCDPSTLARDLKHL 423

Query: 336 S--TTHTIERLALFDQFPYTRHMECGVLLVRK 365
                 TIE +   D FP T+H+E   LL ++
Sbjct: 424 EGFGFKTIE-VQPVDMFPNTKHVETVALLTKR 454


>gi|315182546|gb|ADT89459.1| 23S rRNA metyluridine methyltransferase [Vibrio furnissii NCTC
           11218]
          Length = 377

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L  A     V  +EI   ++ +A+ + +A  ++N+    + S +F+  
Sbjct: 238 MWDLFCGVGGFALHCASPSTAVTGIEIEPEAIASAKRSASAMGIDNLSFAALDSAQFSLG 297

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                +                + V+PPR GL DA    +   A  HI+Y SCNP ++  
Sbjct: 298 QDVAPDL---------------VLVNPPRRGLGDALTQQLAMLAPKHIIYSSCNPLTMKN 342

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L+    + +L  FD FP+T H E  +LL R
Sbjct: 343 DVEQLTEYRAV-KLQWFDMFPHTDHAEVLLLLER 375


>gi|256763335|ref|ZP_05503915.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3]
 gi|256963815|ref|ZP_05567986.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           HIP11704]
 gi|307271762|ref|ZP_07553033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
 gi|256684586|gb|EEU24281.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3]
 gi|256954311|gb|EEU70943.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           HIP11704]
 gi|306511640|gb|EFM80639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
          Length = 456

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|307130763|ref|YP_003882779.1| 23S rRNA m(5)U747 methyltransferase [Dickeya dadantii 3937]
 gi|306528292|gb|ADM98222.1| 23S rRNA m(5)U747 methyltransferase [Dickeya dadantii 3937]
          Length = 376

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 18/156 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L +L+CG G F L  A     +  +EI+  ++  AR + A   + NV    + S  F  
Sbjct: 236 SLWDLFCGVGGFGLHCASSDTPLTGIEISPEAIACARRSAAQLGLTNVSFAALDSTRFA- 294

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
                      +  D+       + V+PPR G+       +   A P++LY SCN +S+ 
Sbjct: 295 -------VGEAQTPDL-------VIVNPPRRGIGAELCDYLSRMAPPYLLYSSCNAESMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD++ L   + I++  LFD FP+T H E   LL R+
Sbjct: 341 RDIARLP-AYQIQQAQLFDMFPHTAHYEVLALLQRR 375


>gi|297202920|ref|ZP_06920317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sviceus
           ATCC 29083]
 gi|297148247|gb|EDY59291.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sviceus
           ATCC 29083]
          Length = 442

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER    GRT  +R     F Q +      +++ V+      +G++ L+LYCG G 
Sbjct: 250 RAFVRERAD--GRT--HRVGSGGFWQVHPQAADTLVKAVMQGLLPRKGEMALDLYCGVGL 305

Query: 223 FSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA        VL +E  K +VE AR+N+AA        VR+   +    + R    
Sbjct: 306 FAGALADRLGDQGAVLGIESGKRAVEDARHNLAA-----FDRVRIEQGKVEAVLPR---- 356

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
             + ++D+       I +DPPR+G    TV  + +     I Y++C+P +L RDL     
Sbjct: 357 TGITEVDL-------IVLDPPRAGAGRKTVQHLSSLGARRIAYVACDPAALARDLGYFRD 409

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + +  L +FD FP T H+EC  +L
Sbjct: 410 GGYRVRTLRVFDLFPMTHHVECVAIL 435


>gi|195977835|ref|YP_002123079.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974540|gb|ACG62066.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 453

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  A  N A N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSFAKEVKAVYGVEVIEAAVRDAEKNAALNGITNAHYVADSAE----- 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                  N + +      +   I VDPPR GL ++ +    A     I YISCNP ++ R
Sbjct: 363 -------NAMANWCQEGIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+       + ++++   D FP T H+EC VLL R
Sbjct: 416 DIKRYEELGYKLQKVQPVDLFPMTHHVECVVLLQR 450


>gi|319399862|gb|EFV88109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis FRI909]
          Length = 456

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 31/223 (13%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
           ++GR + T     +D ++++L+     +IY   + SF Q N+     + +  L   +   
Sbjct: 254 IMGRQSMT--LYGKDKIEDQLS----EVIYHISDLSFYQINSSQTEKLYQQALNYAQLTG 307

Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            ++ L+ YCG G   L +A     V  VE+   +++ A  N   N + N           
Sbjct: 308 KEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF-------- 359

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTI-----FVDPPRSGLDDA-TVGMVQAYPH-ILYIS 322
                   E  + +D+ I +++ + I      VDPPR G D+     +++  P  I+YIS
Sbjct: 360 --------ECGKAEDV-ILTWKSQGIKPDLVMVDPPRKGCDETFLTTLLKLNPKRIVYIS 410

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CNP +  RD  IL+  + +  +   D FP T H+E   L VRK
Sbjct: 411 CNPSTQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453


>gi|312880126|ref|ZP_07739926.1| RNA methyltransferase, TrmA family [Aminomonas paucivorans DSM
           12260]
 gi|310783417|gb|EFQ23815.1| RNA methyltransferase, TrmA family [Aminomonas paucivorans DSM
           12260]
          Length = 458

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
           QG LLELY G G+ SL LA     V AVE   P+ E+ + N AA+ +   + ++   +++
Sbjct: 314 QGHLLELYSGVGSLSLFLASRARSVQAVEEWLPATESLQANAAAHGLEQRLSVLSGKAED 373

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             + + R+               F  + +DPPR G     +  +       ++Y+SCNP 
Sbjct: 374 VLEKLARD--------------SFDGVVLDPPRGGCHPKVLERILDLDPKKVVYVSCNPA 419

Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           +L RDL IL      I  L  FD FP T H+E   LL 
Sbjct: 420 TLARDLRILVDGGFRIRSLRPFDLFPQTAHVETRALLT 457


>gi|256784672|ref|ZP_05523103.1| RNA methyltransferase [Streptomyces lividans TK24]
 gi|289768558|ref|ZP_06527936.1| RNA methyltransferase [Streptomyces lividans TK24]
 gi|289698757|gb|EFD66186.1| RNA methyltransferase [Streptomyces lividans TK24]
          Length = 458

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 23/160 (14%)

Query: 210 QGDL-LELYCGNGNFSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +GD+ L+LYCG G F+  LA R  D+  VL +E  K +VE AR+N+AA        VR+ 
Sbjct: 308 KGDMALDLYCGVGLFAGALADRVGDQGAVLGIESGKRAVEDARHNLAA-----FDRVRIE 362

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323
             +    + R      + ++D+       I +DPPR+G    TV  +       I Y++C
Sbjct: 363 QGKVESVLPR----TGIDEVDL-------IVLDPPRAGAGRKTVQHLSTLGARRIAYVAC 411

Query: 324 NPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           +P +L RDL       + +  L +FD FP T H+EC  +L
Sbjct: 412 DPAALARDLGYFQDGGYRVRTLRVFDLFPMTAHVECVAIL 451


>gi|325859605|ref|ZP_08172738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
           CRIS 18C-A]
 gi|325482885|gb|EGC85885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
           CRIS 18C-A]
          Length = 478

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 16/194 (8%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVL 235
           L ++    SF Q N     H+   V      + G+ L  +LY G G  +  +AR   +V+
Sbjct: 295 LKFKVGPKSFYQTNTEQAYHLYS-VARTFAALTGNELVYDLYTGTGTIANFIARDARKVI 353

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E    ++E A+ N   N ++N        K+              +D          I
Sbjct: 354 GIEYVPEAIEDAKVNAEINKIDNTLFYAGDMKDILT-----------EDFICRHGHPDVI 402

Query: 296 FVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
             DPPR+G+    + ++  A P  I+Y+SCNP +  RDL++L   + +  +   D FP+T
Sbjct: 403 ITDPPRAGMHQDVISVILGASPKRIVYVSCNPATQARDLALLDADYRVAAVQPVDMFPHT 462

Query: 354 RHMECGVLLVRKPS 367
            H+E  VLL ++ +
Sbjct: 463 PHVENVVLLEKREA 476


>gi|296876678|ref|ZP_06900726.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432180|gb|EFH17979.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 452

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASLNGITNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 451


>gi|242371794|ref|ZP_04817368.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242350495|gb|EES42096.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 453

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 22/158 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A  N   N +NN              
Sbjct: 311 VLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKDAEENATKNQLNNTTF----------- 359

Query: 273 MRREREFNRLKDI----DIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326
                E  + +DI         +   + VDPPR G D+  +  +++  P  I+YISCNP 
Sbjct: 360 -----ECGKAEDIILEWKAQGIKPDVVMVDPPRKGCDETFIKTLLKLNPKRIVYISCNPS 414

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  RD  +L++ + +  +   D FP T H+E   L  R
Sbjct: 415 TQQRDAQMLASHYHLVEITPVDMFPQTTHIETVALFER 452


>gi|161507161|ref|YP_001577115.1| RNA methyltransferase family protein [Lactobacillus helveticus DPC
           4571]
 gi|260102926|ref|ZP_05753163.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           helveticus DSM 20075]
 gi|160348150|gb|ABX26824.1| RNA methyltransferase family protein [Lactobacillus helveticus DPC
           4571]
 gi|260083270|gb|EEW67390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           helveticus DSM 20075]
          Length = 460

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S ++    
Sbjct: 317 LIDAYSGVGTLGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKVLPE 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           ++     N    ID        + VDPPR+GL    +  ++Q  P   +YISCNP +L +
Sbjct: 377 LK-----NSGVSID-------ALIVDPPRTGLAKKLIKTLLQVKPETFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC-GVLLVRK 365
           DL +LS  + I  +   D  P T   E    L++RK
Sbjct: 425 DLVLLSEVYDIRVIQNVDMLPQTPRCEAIAKLVLRK 460


>gi|138894075|ref|YP_001124528.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265588|gb|ABO65783.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 464

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 21/213 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
            ++T++    +Y+ E L      L +     +F Q N    V + + V  A+  + G   
Sbjct: 264 GDETEVLAGDEYIQETLG----DLSFELSARAFFQLNPIQTVKLYDEVKKAS-ALTGTER 318

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LAR    V  ++    ++E A+ N   +   N   V   ++ +   
Sbjct: 319 IVDAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAKKNAKKHGFENTHYVVGKAEYWLPK 378

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
             ++             ++   + VDPPR G D A +  +++  P  ++Y+SCNP SL R
Sbjct: 379 WVKQ------------GWKPDVVIVDPPRVGCDRALLETILRVRPQTVVYVSCNPSSLAR 426

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL  L+  + ++ +   D FP+T H+E    L+
Sbjct: 427 DLDTLARAYRVDYIQPVDMFPHTAHVETVAKLI 459


>gi|21224242|ref|NP_630021.1| RNA methyltransferase [Streptomyces coelicolor A3(2)]
 gi|50401722|sp|O54099|Y5901_STRCO RecName: Full=Uncharacterized RNA methyltransferase SCO5901
 gi|2815315|emb|CAA16438.1| putative RNA methyltransferase [Streptomyces coelicolor A3(2)]
          Length = 458

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 23/160 (14%)

Query: 210 QGDL-LELYCGNGNFSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +GD+ L+LYCG G F+  LA R  D+  VL +E  K +VE AR+N+AA        VR+ 
Sbjct: 308 KGDMALDLYCGVGLFAGALADRVGDQGAVLGIESGKRAVEDARHNLAA-----FDRVRIE 362

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323
             +    + R      + ++D+       I +DPPR+G    TV  +       I Y++C
Sbjct: 363 QGKVESVLPR----TGIDEVDL-------IVLDPPRAGAGRKTVQHLSTLGARRIAYVAC 411

Query: 324 NPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           +P +L RDL       + +  L +FD FP T H+EC  +L
Sbjct: 412 DPAALARDLGYFQDGGYRVRTLRVFDLFPMTAHVECVAIL 451


>gi|325267375|ref|ZP_08134036.1| 23S rRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC
           33394]
 gi|324981170|gb|EGC16821.1| 23S rRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC
           33394]
          Length = 435

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 16/177 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ N  +N  M+   +        + +++L+CG GNF+L LAR   R++ +E A   
Sbjct: 262 GDFTQINLPMNAQMVARAVRLLDPQPHERIVDLFCGLGNFTLPLARSGARIIGIEGADSL 321

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              A+ N   N ++N+        EF+ A      F+   D       F  + +DPPR+G
Sbjct: 322 TRRAQANARRNGLDNI--------EFSTA----DLFDTQPDTVAQWGHFDKMLLDPPRAG 369

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
                  +   Y    I+Y+SCNP +L RD ++L    +      + + FP+T H+E
Sbjct: 370 ALAVVQSLHAPYLPERIVYVSCNPATLARDAAVLVGKGYAFRAAGILNLFPHTAHIE 426


>gi|312867756|ref|ZP_07727962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parasanguinis F0405]
 gi|311096819|gb|EFQ55057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parasanguinis F0405]
          Length = 452

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVECVSLLVKR 451


>gi|254419097|ref|ZP_05032821.1| tRNA (Uracil-5-)-methyltransferase superfamily [Brevundimonas sp.
           BAL3]
 gi|196185274|gb|EDX80250.1| tRNA (Uracil-5-)-methyltransferase superfamily [Brevundimonas sp.
           BAL3]
          Length = 414

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 29/203 (14%)

Query: 170 RLTVAGRTLI-YRQIENSFTQ-----PNAGI-------NVHMLEWVLAATKGIQGDLLEL 216
           RL++AG TL+  RQ +  F       P  G           M+E  +AA KG +  + +L
Sbjct: 219 RLSLAGDTLVMARQPKIGFGPATVPLPAGGFLQAVPQAEAAMVERAVAAVKGAR-KIADL 277

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           +CG G F+  LA     V+A + +K  +EA +       V + K ++  + E     RR 
Sbjct: 278 FCGAGTFTFPLA-TVAPVIAADASKAGIEALKAG-----VGSAKGMKAITAEARDLFRRP 331

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCNPDSLCRDLSIL 335
                LK  D        I  DPPR+G  D T  +      ++  +SCNP +  RD  +L
Sbjct: 332 LTPYDLKGCD-------AIVFDPPRAGAIDQTAQIAGTKAGVVVGVSCNPQTFARDARVL 384

Query: 336 -STTHTIERLALFDQFPYTRHME 357
                 +ER+   DQF ++ H+E
Sbjct: 385 IDAGFRLERVTPVDQFLWSAHVE 407


>gi|206901370|ref|YP_002250424.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus
           thermophilum H-6-12]
 gi|206740473|gb|ACI19531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus
           thermophilum H-6-12]
          Length = 448

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + + YCG G  SL L++  ++V  +E+ + ++E A  N   N V NV+ +   S+E    
Sbjct: 305 VFDAYCGIGTISLFLSKKAEKVYGIEVERTAIEDAWKNARLNKVKNVEFIWGRSEE---V 361

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           + R  E  ++ D          + +DPPR G D   +  +       I+YISC P +L R
Sbjct: 362 IPRLIEDGKIPD---------AVVLDPPRKGCDQNLLESIIRAKIRQIIYISCYPSTLAR 412

Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
           D++I L+  + +  +   D FP T H+E   LL
Sbjct: 413 DINILLNAGYNLVDVQPVDMFPQTFHVETIALL 445


>gi|324991589|gb|EGC23522.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK353]
          Length = 469

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A++  +V  VE+   +VE +R N   N + N   V   ++E  Q 
Sbjct: 321 VIDAYSGIGTIGLSVAKYVKQVYGVEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQD 380

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ +   V   P  I YISCN  ++ R
Sbjct: 381 WLKE------------GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMAR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LLVR
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 463


>gi|294674202|ref|YP_003574818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola
           23]
 gi|294473371|gb|ADE82760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola
           23]
          Length = 483

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 94/217 (43%), Gaps = 24/217 (11%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD 212
           C D     E L   G   IY  +E+        SF Q N     H+   V     G+ G+
Sbjct: 279 CNDTIGDQEILVFKGIDHIYELMEDLKFKVGPKSFYQTNTEQAYHLYS-VARNFAGLTGN 337

Query: 213 LL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            L  +LY G G  +  +A+   +V+ +E    ++E A+ N   N + N        K+  
Sbjct: 338 ELVYDLYTGTGTIANFVAKKARKVIGIEYVPEAIEDAKINSEVNKIGNTLFYAGDMKDIL 397

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSL 328
                  EF     I  H +    I  DPPR+G+  D    ++ A P  I+Y+SCNP + 
Sbjct: 398 T-----EEF-----IAEHGHP-DVIITDPPRAGMHPDVVKTILGAAPKRIVYVSCNPATQ 446

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL  L   + +  +   D FP+T H+E  VLL R+
Sbjct: 447 ARDLHDLDVDYRVAAVQPVDMFPHTPHVENVVLLERR 483


>gi|251782756|ref|YP_002997059.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391386|dbj|BAH81845.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 453

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 280 SFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 339

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N A N + NV  V  +++       +E       DI     +   I VDPPR GL
Sbjct: 340 KDAQQNAARNGITNVHFVADTAENAMATWAKE-------DI-----KPSVILVDPPRKGL 387

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC  L
Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQPVDLFPQTHHVECIAL 447

Query: 362 LVRKPS 367
           + R  S
Sbjct: 448 IQRMKS 453


>gi|196250256|ref|ZP_03148949.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
 gi|196210145|gb|EDY04911.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
          Length = 469

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 97/213 (45%), Gaps = 21/213 (9%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
            ++T++    +Y+ E L      L +     +F Q N    V + + V  A+  + G   
Sbjct: 269 GDETEVLAGDEYIQETLG----DLSFELSARAFFQLNPIQTVKLYDEVKKAS-ALTGTER 323

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LAR    V  ++    ++E A+ N   +   N   V   ++ +   
Sbjct: 324 IVDAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAKKNAKKHGFENTHYVVGKAEYWLPK 383

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
             ++             ++   + VDPPR G D A +  +++  P  ++Y+SCNP SL R
Sbjct: 384 WVKQ------------GWKPDVVIVDPPRVGCDRALLETILRVRPQTVVYVSCNPSSLAR 431

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL  L+  + ++ +   D FP+T H+E    L+
Sbjct: 432 DLDTLARAYRVDYIQPVDMFPHTAHVETVAKLI 464


>gi|294619066|ref|ZP_06698561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1679]
 gi|291594727|gb|EFF26109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1679]
          Length = 460

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 27/222 (12%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211
           +A KT + +     DE + + G+  I  QI E +F   P A   ++  +  L   +GI+ 
Sbjct: 252 QAQKTSLVMG----DETIHLWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307

Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   +++ YCG G   L +A+    V  ++    ++  A+ N      +N +    
Sbjct: 308 LDVQPNETIVDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVG 367

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
           ++++       E             ++   I VDPPR+GLD+A +  +  YP   ++YIS
Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYIS 415

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CN  +L RDL  LS    IE L   D FP T   E  V + R
Sbjct: 416 CNVSTLARDLVNLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457


>gi|229815568|ref|ZP_04445895.1| hypothetical protein COLINT_02618 [Collinsella intestinalis DSM
           13280]
 gi|229808798|gb|EEP44573.1| hypothetical protein COLINT_02618 [Collinsella intestinalis DSM
           13280]
          Length = 437

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 21/155 (13%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++LYCG G F+L LAR  D V AVE   P+V   R N+   ++ NV ++   +       
Sbjct: 299 IDLYCGAGTFTLPLARRCDFVSAVESYGPAVRDLRRNLDIANLTNVDVIGGDAV------ 352

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
              REF   +D D+       + VDPPR+GL    + ++ +     + Y+SC+P +L RD
Sbjct: 353 ---REFPD-EDADV-------LVVDPPRAGLAPEAIRLIASTSARDVAYVSCDPATLARD 401

Query: 332 LSILSTTHTIERL--ALFDQFPYTRHMECGVLLVR 364
           L       T   +     D FP T H E  V L R
Sbjct: 402 LRRFVEEGTFRPVWATPVDLFPQTFHCETVVRLTR 436


>gi|225442369|ref|XP_002276511.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743126|emb|CBI35993.3| unnamed protein product [Vitis vinifera]
          Length = 570

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 30/203 (14%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHF 231
           R L ++   NSF Q N      +L  ++    G++GD    +L+L+CG G   L L+R  
Sbjct: 379 RGLTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLSRRV 437

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY- 290
             V   E+   +V  AR N   N + N   +             E + N++ +     + 
Sbjct: 438 RHVYGYEVVAQAVSDARRNAKLNGICNATFI-------------EGDLNKIGENFGKDFP 484

Query: 291 RFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILS---------TTH 339
           +   +  DP R G  +      +    P I+Y+SCNP +  RDL  L            +
Sbjct: 485 KPDVVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVVEQNIEGCY 544

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
            ++ L   D FP+T H+EC  LL
Sbjct: 545 KLKSLQPVDMFPHTPHIECVCLL 567


>gi|332702740|ref|ZP_08422828.1| RNA methyltransferase, TrmA family [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552889|gb|EGJ49933.1| RNA methyltransferase, TrmA family [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 508

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 20/208 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPN-AGIN--VHMLEWVLAATKGIQG-DLLELYCG 219
           R + D  L ++   L YR    +F Q N AG      ++E +   +    G ++ + YCG
Sbjct: 314 RAWGDPVLEMSLGGLRYRLSPQAFFQTNTAGAERLFGLVEEMAGLSDWPNGPEIFDCYCG 373

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L LAR    V   E+ + +V  A  N   N++ N   V          +RR    
Sbjct: 374 VGAMALRLARATGHVTGFELVEGAVRDATDNARLNNLTNCSFV-------AGDLRRTLAD 426

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILST 337
            +L   D+       + +DPPR+G+  D    ++   P  I+ +SC+P +  RD ++L  
Sbjct: 427 RKLPKPDV-------LVIDPPRAGMHPDVAARILDLAPERIVSVSCDPATFARDAALLLP 479

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +T+ R+   D FP++ H+E   LL+R 
Sbjct: 480 GYTLTRVVPVDLFPHSHHVETVALLIRN 507


>gi|288904724|ref|YP_003429945.1| RNA methyltransferase, TrmA family [Streptococcus gallolyticus
           UCN34]
 gi|288731449|emb|CBI13001.1| putative RNA methyltransferase, TrmA family [Streptococcus
           gallolyticus UCN34]
          Length = 450

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G      A     V  ++I   +V  A+ N       N        +E    
Sbjct: 308 VIDAYCGVGTIGFAFAAKVKSVRGMDIIPEAVADAKKNAQRMGFENTHYEAGRVEEIIPK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  LS  + +  +   D FP+T   E  V LVRK
Sbjct: 416 DLVKLSKVYDVHYIQSVDMFPHTARTEAVVKLVRK 450


>gi|296315101|ref|ZP_06865042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria
           polysaccharea ATCC 43768]
 gi|296838012|gb|EFH21950.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria
           polysaccharea ATCC 43768]
          Length = 443

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ N   N  M+  V+      QG+ + +L+CG GNFSL +A+    V+ +E A+  
Sbjct: 265 GDFTQINTDTNRLMISRVVKMLDIRQGERVADLFCGLGNFSLPIAKSGADVVGIEGAENL 324

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   N  +          +F  A      F+  +       RF  + +DPPRSG
Sbjct: 325 VRRARQNARLNGCDG-------QTDFIAA----NLFDCTEKTVASWGRFDKMLIDPPRSG 373

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
             +    +   Y    I+Y+SCNP +L RD  +L    + + +  + + F  T H E
Sbjct: 374 AYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSQAGIMNMFAQTSHTE 430


>gi|269941368|emb|CBI49765.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 453

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   ++E A+ N   N  N+   V   ++E    
Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNHTTFVCGKAEEVILQ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            + +              +   + VDPPR G D+  +  ++   P  I+YISCNP +  R
Sbjct: 371 WKAQ------------GIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQR 418

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D  +L+  + +E +   D FP T H+E   L 
Sbjct: 419 DALLLAEKYQLEEVTPVDMFPQTTHVETVALF 450


>gi|325285147|ref|YP_004260937.1| RNA methyltransferase, TrmA family [Cellulophaga lytica DSM 7489]
 gi|324320601|gb|ADY28066.1| RNA methyltransferase, TrmA family [Cellulophaga lytica DSM 7489]
          Length = 470

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 30/218 (13%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  + +  AGR  I+ ++E         SF Q N+    + L  +      + GD L
Sbjct: 267 DTIYDQDIVCFAGRDHIFEEMEGLQFKINPKSFYQTNSE-QAYELYKITRDFAELSGDEL 325

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             +LY G G  +  +++   +V+ +E    ++E A+ N   N ++N        K+    
Sbjct: 326 VYDLYTGTGTIAQFVSKKAKKVVGIEAVPEAIEDAKANAKHNKIDNTVFYAGDMKKIFNP 385

Query: 273 MRREREF---NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
                EF   N   D+         I  DPPR G+    V  + A     ++Y+SCN  +
Sbjct: 386 -----EFIAQNGTPDV---------IITDPPREGMHKDVVEQILAIAPNKVVYVSCNSAT 431

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL +++  + I RL   D FP T H+E  VLL ++
Sbjct: 432 QARDLELMNDMYEITRLQAVDMFPQTHHVENVVLLKKR 469


>gi|312900072|ref|ZP_07759389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
 gi|311292829|gb|EFQ71385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
          Length = 456

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLIQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|148889|gb|AAA24958.1| this partial ORF is 58% identical to an E.coli tRNA methyl
          transferase gene, trnA.; ORF4; putative [Haemophilus
          influenzae]
          Length = 63

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 42/61 (68%)

Query: 5  LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
          L I QY + L +K+++L  ++  F  P++Q+F S   HY MRAEF IWH+ DD YHIMFD
Sbjct: 3  LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYAMRAEFRIWHEQDDFYHIMFD 62

Query: 65 Q 65
          Q
Sbjct: 63 Q 63


>gi|86133209|ref|ZP_01051791.1| RNA methyltransferase, TrmA family [Polaribacter sp. MED152]
 gi|85820072|gb|EAQ41219.1| RNA methyltransferase, TrmA family [Polaribacter sp. MED152]
          Length = 483

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++L+CG G    ++A   +  +++ V+I   ++E A+ N   N++  +K       +F 
Sbjct: 339 VMDLFCGTGTIGQIVASKSENAKIVGVDIVASAIEDAKENAKRNNIEGLKFYAADVGKF- 397

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
             + +  E+           + KTI +DP R+G+   T+  +       ++Y+SCNP + 
Sbjct: 398 --LTQHPEYQD---------KIKTIILDPARAGIMPKTLQKIINLNADRMVYVSCNPATQ 446

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD  +L    + I++++L DQFP+T H+E  VL  R
Sbjct: 447 ARDTELLREAGYEIKKISLVDQFPHTAHIETVVLFDR 483


>gi|320008078|gb|ADW02928.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces flavogriseus
           ATCC 33331]
          Length = 452

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 22/155 (14%)

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  + +       VL +E  K +VE AR+N+      ++  VR+   +  
Sbjct: 307 LDLYCGVGLFAGAIGQRIGEKGAVLGIESGKRAVEDARHNL-----KDLDRVRIEHGKVD 361

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           Q + R      + + D+       I +DPPR+G   ATV  + A     I Y++C+P +L
Sbjct: 362 QVLPR----TGITECDL-------IVLDPPRAGAGKATVKQLVALGARRIAYVACDPAAL 410

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
            RD++      + +  L  FD FP T H+EC  +L
Sbjct: 411 ARDIAYFRDGGYRVRTLRAFDLFPMTHHVECVAIL 445


>gi|148239625|ref|YP_001225012.1| putative RNA methyltransferase [Synechococcus sp. WH 7803]
 gi|147848164|emb|CAK23715.1| Hypothetical RNA methyltransferase [Synechococcus sp. WH 7803]
          Length = 466

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 22/170 (12%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +W++        ++++ YCG G  +L LA     V+ +EI + SV  A+ N   N +   
Sbjct: 304 DWIVGVAP--SANVIDAYCGIGTIALPLAAAGLNVIGLEINRASVIQAQENARRNALRTA 361

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-- 317
             +     +  + +           + IH    + + VDPPR GL    + M+ A P   
Sbjct: 362 TFIDGDVVDHLRQL-----------LPIH----QVLVVDPPRKGLAPDVLQMILAIPPAF 406

Query: 318 ILYISCNPDSLCRDLSILSTT---HTIERLALFDQFPYTRHMECGVLLVR 364
           ++Y SC+P +L RDL  L+     + IE +   D FP T H+EC V++VR
Sbjct: 407 LIYQSCDPATLARDLQQLAGPDGPYRIETIRPVDFFPQTSHLECLVMMVR 456


>gi|322376104|ref|ZP_08050613.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
 gi|321278872|gb|EFX55916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
          Length = 453

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAQKMGFDNTHYEAGTAEETIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             ++             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYQD------------GYRADALIVDPPRTGLDDKLLETILTYVPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + ++ +   D FP+T   E  V LV+K
Sbjct: 416 DLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 450


>gi|322387793|ref|ZP_08061401.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141295|gb|EFX36792.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 452

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N + N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVTPEAVENSQKNAELNGITNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+EC  LLV++
Sbjct: 416 DIKLYQKLGYELKKVQPVDLFPQTHHVECVSLLVKR 451


>gi|171058602|ref|YP_001790951.1| 23S rRNA 5-methyluridine methyltransferase [Leptothrix cholodnii
           SP-6]
 gi|170776047|gb|ACB34186.1| RNA methyltransferase, TrmA family [Leptothrix cholodnii SP-6]
          Length = 498

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 130/295 (44%), Gaps = 44/295 (14%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRD--ALHARKYQIQLIGR 154
           R +L QI+    +S Q +  ++ + L    L+      A RLRD  A+H  ++ +Q  G 
Sbjct: 187 RERLPQIELAVGESSQGLENVLVNALVLRNLEPLSAADAQRLRDFAAIHPVQWWLQPKG- 245

Query: 155 ANKTKICLDRDYVDERLTVA----GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
             +T   LD + V  +L  +    G T+ ++  +  FTQ N  IN  ++   L   K +Q
Sbjct: 246 -PETVHLLD-EGVGPKLAYSLPEYGVTMPFKPTD--FTQVNHHINRVLVGKALGLLK-VQ 300

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  +++ +CG GNF+L LA     VL +E ++  V+ +R N   N + +          
Sbjct: 301 GNERVIDWFCGLGNFTLPLATQAREVLGIEGSETLVQRSRENAQLNGLAH---------- 350

Query: 269 FTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG-------LDDATVGMVQAYP---H 317
              A    R    L   D+ +Y       +DPPR G       L +     +  Y     
Sbjct: 351 --NATFAARNLFELSPADLAAYGSADRWLIDPPREGAFALSKALAEVRQQPIDGYTPPQR 408

Query: 318 ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           I+Y+SCNP +L RD  +L     +        + FP+T H+E  + +  +  GW 
Sbjct: 409 IVYVSCNPSTLARDAGLLVHQAGYRCTAAGAVNMFPHTAHVES-IAVFERIDGWQ 462


>gi|293553261|ref|ZP_06673898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1039]
 gi|291602671|gb|EFF32886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1039]
          Length = 460

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 27/222 (12%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211
           +A KT + +     DE + + G+  I  QI E +F   P A   ++  +  L   +GI+ 
Sbjct: 252 QAQKTSLVMG----DETIHLWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307

Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   +++ YCG G   L +A+    V  ++    ++  A+ N      +N +    
Sbjct: 308 LDVQPNETIVDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVG 367

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
           ++++       E             ++   I VDPPR+GLD+A +  +  YP   ++YIS
Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYIS 415

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CN  +L RDL  LS    IE L   D FP T   E  V + R
Sbjct: 416 CNVSTLARDLVDLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457


>gi|291547098|emb|CBL20206.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5]
          Length = 484

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 31/217 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           ++++TKI   +DY  E L      L ++    SF QPN+       E + +  +   GD 
Sbjct: 234 QSDETKILYGKDYFYEELL----GLKFKISTFSFFQPNS----LAAEILYSKVREYVGDT 285

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G  + + A     V+ VEI + +V+AAR N A N ++N + +      
Sbjct: 286 RDKVVFDLYSGTGTIAQLAASVASEVIGVEIVEDAVKAARENAALNGIDNCRFIAG---- 341

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326
                      + LK +D    +   I +DPPR G+    +  + AY    I+YISC   
Sbjct: 342 -----------DVLKVLDEVPEKPDMIILDPPRDGVHPKALPKILAYGVDQIVYISCKVT 390

Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362
           SL RDL +     + +      DQF    H+E  VLL
Sbjct: 391 SLVRDLPAFYEAGYEMTHACAVDQFCQGVHVETIVLL 427


>gi|300173743|ref|YP_003772909.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888122|emb|CBL92090.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
          Length = 458

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 29/185 (15%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGI--QGDL-LELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N      + +  LAA K      DL ++ Y G G   + +A    +V+ VE+  
Sbjct: 284 NSFYQVNPQTTEVLYD--LAAKKAALKPTDLVIDAYSGIGTIGITIANQVRQVIGVEVIP 341

Query: 242 PSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +V  A+ N+ AN++NN   I+  + K+F +  + ER             R   +FVDPP
Sbjct: 342 GAVADAQINVRANNINNADYILADAPKQFAK-WQSER------------LRPNVVFVDPP 388

Query: 301 RSGLDDATVGMVQAYPHI-----LYISCNPDSLCRD-LSILSTTHTIE-RLALFDQFPYT 353
           R GL   T  ++QA   +     +YISCNP +L RD + I+   + I+  +   DQFP T
Sbjct: 389 RRGL---TRELIQATTEMGPDKFVYISCNPVTLVRDAVEIIRNGYHIDGPIVPVDQFPQT 445

Query: 354 RHMEC 358
            H+E 
Sbjct: 446 SHIES 450


>gi|293570978|ref|ZP_06682021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E980]
 gi|291608904|gb|EFF38183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E980]
          Length = 460

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 27/222 (12%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211
           +A KT + +     DE + + G+  I  QI E +F   P A   ++  +  L   +GI+ 
Sbjct: 252 QAQKTSLVMG----DETIHLWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307

Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   +++ YCG G   L +A+    V  ++    ++  A+ N      +N +    
Sbjct: 308 LDVQPNETIVDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVG 367

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
           ++++       E             ++   I VDPPR+GLD+A +  +  YP   ++YIS
Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYIS 415

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CN  +L RDL  LS    IE L   D FP T   E  V + R
Sbjct: 416 CNVSTLARDLVDLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457


>gi|57867361|ref|YP_189004.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|81674004|sp|Q5HN37|Y1435_STAEQ RecName: Full=Uncharacterized RNA methyltransferase SERP1435
 gi|57638019|gb|AAW54807.1| RNA methyltransferase, TrmA family [Staphylococcus epidermidis
           RP62A]
          Length = 456

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A  N   N + N              
Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 359

Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326
                E  + +D+ +       +   + VDPPR G D+     +++  P  I+YISCNP 
Sbjct: 360 -----ECGKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 414

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD  IL+  + +  +   D FP T H+E   L VRK
Sbjct: 415 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453


>gi|269216883|ref|ZP_06160737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
           700122]
 gi|269129690|gb|EEZ60774.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
           700122]
          Length = 442

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 21/184 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N      ++E  L A    +GD + +LYCG G F++ LAR    V  VE    SV
Sbjct: 276 SFFQVNTEQAERLVETTLEALDVREGDEVADLYCGVGTFTIPLARTGAHVYGVESYSSSV 335

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
              R  +A     ++ ++   +          RE   L  +D        + VDPPR+GL
Sbjct: 336 RDLR-RVAEETELDIDVIGGDAA---------RELPMLGHLD-------AVLVDPPRAGL 378

Query: 305 DDATV-GMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
           D + V  + +A P  + Y+SC+P +  RD++   +  + + R    D FP T H+E   L
Sbjct: 379 DASLVKSIAEAGPTKVAYVSCDPATWARDVARFEAQGYELTRATPVDLFPQTYHVETTSL 438

Query: 362 LVRK 365
           L+RK
Sbjct: 439 LIRK 442


>gi|227356755|ref|ZP_03841140.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|227163045|gb|EEI47980.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 377

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 18/157 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L +L+CG+G F L  A+    ++ +EI+  ++E AR +     + +V+   + S  F  A
Sbjct: 237 LWDLFCGSGGFGLHCAQKNTELIGIEISPEAIECARLSANELGLEHVEFQALDSTGFALA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                E                + V+PPR G+ +     + +     ILY SCN  ++ +
Sbjct: 297 RESVPEL---------------VLVNPPRRGIGETLCDYLNSMKPRFILYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           D+  LS  + I+R+ LFD FP+T H E   LLV + S
Sbjct: 342 DIQQLS-HYRIDRVQLFDMFPHTAHYEVLTLLVLQQS 377


>gi|182418140|ref|ZP_02949440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
           5521]
 gi|237666196|ref|ZP_04526183.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377958|gb|EDT75498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
           5521]
 gi|237658286|gb|EEP55839.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 454

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 17/162 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + GD  + + YCG G  SL L++   +V  VEI   +++ A+ N   N++NN +     S
Sbjct: 305 LNGDEIVFDAYCGTGTISLFLSQKAKKVYGVEIIPQAIDNAKVNAEINNINNAEFFVGKS 364

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCN 324
           +E    +  +     + D+         I VDPPR G D   +  + +A P  I+Y+SC+
Sbjct: 365 EEIIPKLIDD---GIIPDV---------IVVDPPRKGCDSKLLDALGKAKPKKIVYVSCD 412

Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +L RDL+ L S  +  E +   D FP T+H+E   LLV+K
Sbjct: 413 PSTLARDLNYLESKGYKTEEVQPVDMFPMTKHVENVALLVKK 454


>gi|89097300|ref|ZP_01170190.1| hypothetical protein B14911_17015 [Bacillus sp. NRRL B-14911]
 gi|89088123|gb|EAR67234.1| hypothetical protein B14911_17015 [Bacillus sp. NRRL B-14911]
          Length = 460

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 14/143 (9%)

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L LA     V  ++I   S++ A+ N A N++ + K     ++       +E
Sbjct: 321 YCGVGTIGLWLADQAGEVRGMDIIPESIQDAKKNAARNNIKHAKYETGKAEVLLPKWMKE 380

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334
                        +R   I VDPPR+GLD A +  +       ++Y+SCNP +L +D+++
Sbjct: 381 ------------GWRPDVIVVDPPRTGLDQALLKTILKVKPKKVVYVSCNPSTLAKDIAV 428

Query: 335 LSTTHTIERLALFDQFPYTRHME 357
           L   + +E +   D FP T H+E
Sbjct: 429 LDPEYRVEYMQPVDMFPQTAHVE 451


>gi|222085092|ref|YP_002543622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium
           radiobacter K84]
 gi|221722540|gb|ACM25696.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium
           radiobacter K84]
          Length = 416

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 16/180 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +FTQ        M+E V A   G    + +L+ G+G FSL LAR   RV AVE  + ++
Sbjct: 249 GAFTQATKAAEEAMVELV-ATHIGKAKRIADLFAGSGTFSLRLAR-IGRVHAVESEEKAL 306

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  +  AA +   +K V +  ++     RR      LK+ D        +  DPPR+G 
Sbjct: 307 AALDH--AARNTQGLKPVSIERRDL---FRRPLMAQELKNYD-------AVIFDPPRAGA 354

Query: 305 DDATVGMVQAY-PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           +  T  + ++    I+ ISCNP +L RDL+IL+   + I ++   DQF +T H+E  V L
Sbjct: 355 EFQTKELARSVVKKIVAISCNPLTLARDLAILTEAGYRITKVTPIDQFLWTSHVEVVVAL 414


>gi|33863009|ref|NP_894569.1| RNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
 gi|50401516|sp|Q7V7K6|Y737_PROMM RecName: Full=Uncharacterized RNA methyltransferase PMT_0737
 gi|33634926|emb|CAE20912.1| RNA methyltransferase, TrmA family [Prochlorococcus marinus str.
           MIT 9313]
          Length = 465

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 22/175 (12%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++EW+  A+  I  ++++ YCG G  SL +A     V+ +E+   ++  A  N   N ++
Sbjct: 308 LIEWLSTASLDI--NIIDAYCGIGTISLPIAATGYHVIGLELHAEAITQANKNALRNSLD 365

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-- 315
           NV  +     + +  + ++ + N              + +DPPR GLD   +  + +   
Sbjct: 366 NVSFL---CGDVSLLLAKKLQRN------------DVLVLDPPRKGLDQMVIKTILSIQP 410

Query: 316 PHILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             + Y+SC+P +L RDL  L   +  + I+ L   D FP T H+EC  LL R  S
Sbjct: 411 ERVAYLSCDPATLARDLKQLIVPNGPYQIDELQPIDFFPQTMHIECLALLTRISS 465


>gi|189347986|ref|YP_001944515.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245]
 gi|189342133|gb|ACD91536.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245]
          Length = 482

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 16/185 (8%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235
           L +R   NSF Q N+     +   +L    GI+ D  + +LYCG G  +L LARH     
Sbjct: 298 LDFRVSANSFFQTNSSQAAVLYAEILKVA-GIRPDDTVYDLYCGTGTITLYLARHCRMAA 356

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E+ + S+  A  N   N + N    +   K+F  AM       +L++ D        I
Sbjct: 357 GLEVVESSLSDAAKNADLNGITNAVFFQTDLKDF-HAM-----LQKLENYDAPG----VI 406

Query: 296 FVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
             DPPR+G+   A   M++     I+Y+SCNP +L RD   +S   + +  +   D FP+
Sbjct: 407 VTDPPRAGMHPKALETMLKLRARTIVYVSCNPSNLARDGKEISRYGYRLVSVQPVDMFPH 466

Query: 353 TRHME 357
           T H+E
Sbjct: 467 TVHVE 471


>gi|307288671|ref|ZP_07568652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|306500425|gb|EFM69761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|315165278|gb|EFU09295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1302]
          Length = 456

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLNLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|293115663|ref|ZP_05792525.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
 gi|292808836|gb|EFF68041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
          Length = 366

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 162/378 (42%), Gaps = 40/378 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHIMFDQQT 67
           +Y + L  K   + +++  F   N  I   EP  YR +    +  D   ++Y   ++  +
Sbjct: 4   KYSESLEYKQKMIEKLIRPFCKVNKIIGMDEPYFYRNKVHAVVGGDRKGNIYAGTYEAGS 63

Query: 68  KERMRIDYFM---PGSLLINALMIEMMATIRLEP----LLRAKLFQIDYLTSQ-SDQAIV 119
            + + ID  +     +  I A +I++M + +  P      R  L  I   T++ + + +V
Sbjct: 64  HKIVPIDKCLLDNEKADAIIATVIKLMKSFKYRPYNEDTGRGFLRHILIRTAEVTGEIMV 123

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL+    +  + +   I+   A H     I +   + +T + L     ++  T+ G+  I
Sbjct: 124 TLVVGENIFPS-KSNFIKALTAEHPEITTIVMNVNSKRTSMVLG----EKEETLYGKGYI 178

Query: 180 --------YRQIENSFTQPN--AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
                   +R    SF Q N      ++ +    AA  G + ++ + Y G G   +  + 
Sbjct: 179 EDILCGKRFRISSKSFYQVNHEQTEKLYNIAIGYAALTGKE-NVFDAYSGIGTIGICASD 237

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           +   V  VE+ + +V+ A  N   N++ NVK +   + E    M +E    R        
Sbjct: 238 NALSVTGVELNRDAVKDALTNCKLNNLKNVKFMAGDAGEH---MEKEAASGR-------- 286

Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT-HTIERLAL 346
            ++  +F+DPPRSG     +  V   A   ++YISC P+SL RDL +     + +     
Sbjct: 287 -KYDVVFMDPPRSGSSLKFINSVCKMAPSKVVYISCGPESLARDLQLFKKKGYRVVECQP 345

Query: 347 FDQFPYTRHMECGVLLVR 364
            D F +T H+EC VLL +
Sbjct: 346 VDMFGWTGHVECVVLLTK 363


>gi|298208283|ref|YP_003716462.1| putative RNA methyltransferase [Croceibacter atlanticus HTCC2559]
 gi|83848204|gb|EAP86074.1| putative RNA methyltransferase [Croceibacter atlanticus HTCC2559]
          Length = 470

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 26/202 (12%)

Query: 174 AGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNF 223
            GR  I+ ++E         SF Q N+    + L  +      + GD L  +LY G G  
Sbjct: 279 TGRDHIFEEMEGLKFKINAKSFYQTNSK-QAYNLYKITREFADLSGDELVYDLYTGTGTI 337

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRL 282
           +  +A+   +V+ +E    ++E A+ N   N +NNV       K  F+Q      EF   
Sbjct: 338 AQFVAKKAKKVVGIESVPEAIEDAKKNAQFNEINNVDFFAGDMKHVFSQ------EF--- 388

Query: 283 KDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340
             I+ H  +   I  DPPR G+  D    ++   P  I+Y+SCN  +  RDL +++  + 
Sbjct: 389 --IEEHG-QPDIIITDPPRDGMHKDVVAQILNIKPKRIVYVSCNSATQARDLELMNAYYK 445

Query: 341 IERLALFDQFPYTRHMECGVLL 362
           + +    D FP T H+E  V L
Sbjct: 446 VTKTQAVDMFPQTHHVENVVCL 467


>gi|69248258|ref|ZP_00604692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
 gi|257880209|ref|ZP_05659862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,230,933]
 gi|257883010|ref|ZP_05662663.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,502]
 gi|257891407|ref|ZP_05671060.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,410]
 gi|257893596|ref|ZP_05673249.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,408]
 gi|258614397|ref|ZP_05712167.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|260560493|ref|ZP_05832667.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
 gi|289565178|ref|ZP_06445630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           D344SRF]
 gi|293563312|ref|ZP_06677762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1162]
 gi|293569307|ref|ZP_06680605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1071]
 gi|294614976|ref|ZP_06694865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1636]
 gi|294621465|ref|ZP_06700634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           U0317]
 gi|314939803|ref|ZP_07847023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a04]
 gi|314943901|ref|ZP_07850627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133C]
 gi|314949998|ref|ZP_07853291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0082]
 gi|314953520|ref|ZP_07856432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133A]
 gi|314994278|ref|ZP_07859580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133B]
 gi|314995146|ref|ZP_07860262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a01]
 gi|68194473|gb|EAN08972.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
 gi|257814437|gb|EEV43195.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,230,933]
 gi|257818668|gb|EEV45996.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,502]
 gi|257827767|gb|EEV54393.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,410]
 gi|257829975|gb|EEV56582.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,408]
 gi|260073495|gb|EEW61823.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
 gi|289162999|gb|EFD10847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           D344SRF]
 gi|291588013|gb|EFF19863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1071]
 gi|291592107|gb|EFF23727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1636]
 gi|291598959|gb|EFF30007.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           U0317]
 gi|291604764|gb|EFF34248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1162]
 gi|313590637|gb|EFR69482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a01]
 gi|313591313|gb|EFR70158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133B]
 gi|313594443|gb|EFR73288.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133A]
 gi|313597442|gb|EFR76287.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133C]
 gi|313640943|gb|EFS05523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a04]
 gi|313643645|gb|EFS08225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0082]
          Length = 460

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 27/222 (12%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211
           +A KT + +     DE + + G+  I  QI E +F   P A   ++  +  L   +GI+ 
Sbjct: 252 QAQKTSLVMG----DETIHLWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307

Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   +++ YCG G   L +A+    V  ++    ++  A+ N      +N +    
Sbjct: 308 LDVQPNETIVDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVG 367

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
           ++++       E             ++   I VDPPR+GLD+A +  +  YP   ++YIS
Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYIS 415

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CN  +L RDL  LS    IE L   D FP T   E  V + R
Sbjct: 416 CNVSTLARDLVNLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457


>gi|312877074|ref|ZP_07737046.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796124|gb|EFR12481.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 451

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 24/210 (11%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           +E + + G + I  +I N        SF Q N+     +   V+   K ++ +++ ++Y 
Sbjct: 252 EEDILIWGSSTIKDKIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLKNVKAEIVFDIYS 311

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  S+ +A    +V A+E+ + +VE A+ N   N+++N++ +  S+         E E
Sbjct: 312 GIGTISMFVAPFCKKVYAIELVRDAVEDAKKNSKNNNISNIEFISGSA---------EIE 362

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335
             RL    I     + + +DPPRSG +   +  +     P+I+Y+SCNP +L RD +IL 
Sbjct: 363 IPRLMKSGIIP---QAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSNILC 419

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + +  +   D FP T H+EC  L  ++
Sbjct: 420 SNGYEVVEVQPVDMFPQTFHVECVALFKKR 449


>gi|282874553|ref|ZP_06283438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis SK135]
 gi|281296692|gb|EFA89201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis SK135]
 gi|329734822|gb|EGG71127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis VCU028]
          Length = 456

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A  N   N + N              
Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 359

Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326
                E  + +D+ +       +   + VDPPR G D+     +++  P  I+YISCNP 
Sbjct: 360 -----ECGKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 414

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD  IL+  + +  +   D FP T H+E   L VRK
Sbjct: 415 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453


>gi|154482861|ref|ZP_02025309.1| hypothetical protein EUBVEN_00557 [Eubacterium ventriosum ATCC
           27560]
 gi|149736289|gb|EDM52175.1| hypothetical protein EUBVEN_00557 [Eubacterium ventriosum ATCC
           27560]
          Length = 463

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 10/154 (6%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G+ SL LA+   +VL VEI   ++  A+ N   N +NN +    ++++      
Sbjct: 315 DLYCGIGSISLFLAKKAKQVLGVEIVPEAIADAKINAKINGINNAEFFVGAAEDVVTEY- 373

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
               F   KD +    +   I VDPPR G D   +  +V+  P  ++Y+SC+  +L RD+
Sbjct: 374 ----FENHKDDE--ECKPDVIVVDPPRKGCDHKLLETIVEMNPERVVYVSCDSATLARDV 427

Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             LS   + ++ +   D F  T H+E  V L RK
Sbjct: 428 KWLSENGYKLKEVTPCDMFGQTTHVESVVKLHRK 461


>gi|330752426|emb|CBL87377.1| 23S rRNA methyltransferas [uncultured Flavobacteria bacterium]
          Length = 469

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 17/155 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  S  +A++   V+ +EI   +++ A   I ++ +N +K +            
Sbjct: 328 DLYCGLGTISQYVAQYCKIVVGIEIIDEAIQLA---IESSKINGLKNIYF---------- 374

Query: 275 REREFNRLKDIDIHSYRFK--TIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
            + + N +  +D+     K   I +DPPR GL    + ++       ILYISCNP +  R
Sbjct: 375 EKEDINNISKLDLLRKYGKPNAIILDPPRQGLTKKIIKVLLEIKSEKILYISCNPSTQAR 434

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL IL + + +      D FP T H+E  VLL  K
Sbjct: 435 DLEILCSEYEVTLSQAIDMFPQTSHVENIVLLTNK 469


>gi|302672182|ref|YP_003832142.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302396655|gb|ADL35560.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 496

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 13/170 (7%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + +LYCG G  +L +A+    V  VEI   ++E A+ N   N + N       
Sbjct: 327 GLTGEETVWDLYCGIGTITLSMAKKAGHVYGVEIIPDAIEDAKKNALRNGLTNADFFCGK 386

Query: 266 SKE-----FTQAMRREREFNRLK---DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316
           ++E     +      E++ + L+   +I   +     I VDPPR G D A +  M++  P
Sbjct: 387 AEEVLPDFYANGRLEEKDKHALQSEYNISESALHPDVIVVDPPRKGCDQACLDTMLKMSP 446

Query: 317 -HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
             I+Y+SC+  +L RDL IL+   + ++ +   D F +T H+E  VLL +
Sbjct: 447 DRIVYVSCDSATLARDLRILADGGYELKAIRPCDMFGHTVHVETVVLLTK 496


>gi|84029598|sp|Q8CRU6|Y1582_STAES RecName: Full=Uncharacterized RNA methyltransferase SE_1582
          Length = 456

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A  N   N + N              
Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 359

Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326
                E  + +D+ +       +   + VDPPR G D+     +++  P  I+YISCNP 
Sbjct: 360 -----ECGKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 414

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD  IL+  + +  +   D FP T H+E   L VRK
Sbjct: 415 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453


>gi|18977544|ref|NP_578901.1| RNA methyltransferase [Pyrococcus furiosus DSM 3638]
 gi|50401622|sp|Q8U1N4|Y1172_PYRFU RecName: Full=Uncharacterized RNA methyltransferase PF1172
 gi|18893255|gb|AAL81296.1| RNA methyltransferase [Pyrococcus furiosus DSM 3638]
          Length = 411

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 26/176 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           NSF Q N+   V++++ V    K ++G+ ++++Y G G F + LA+   +V+  +    +
Sbjct: 250 NSFFQTNSYQAVNLVKTV---EKFVEGEKVVDMYSGVGTFGVYLAKKGMKVVGFDSNAFA 306

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A  N   N+V           EF  A  RE        +DI    F T+ VDPPR+G
Sbjct: 307 IEMANKNAEINNV---------EAEFFVASDRE--------VDIKG--FDTVIVDPPRAG 347

Query: 304 LDDATVGMVQAY-PH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           L    V  +  + P  I+Y+SCNP +   ++  L+  + IE L   D FP+T H+E
Sbjct: 348 LHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQLN-NYIIEELIALDMFPHTPHIE 402


>gi|312865944|ref|ZP_07726165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei
           F0415]
 gi|311098348|gb|EFQ56571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei
           F0415]
          Length = 453

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 18/195 (9%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDR 233
           G+T  YR    SF Q N  +   + +  +  +     D+ ++ Y G G   L LA+   +
Sbjct: 271 GKT--YRISAQSFYQVNTLMAEKLYQTAIDFSNLTAEDVVIDAYSGIGTIGLSLAQEVKQ 328

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  VE+ + +VE A  N  AN V+N   V   +++   A  +               +  
Sbjct: 329 VYGVEVVEKAVEDAMENARANGVSNADYVCAPAEKAMVAWSKA------------GIKPS 376

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350
            + VDPPR GL ++ +    A     I YISCNP ++ RD+ +       + ++   D F
Sbjct: 377 AVLVDPPRKGLTESFIKASAAMQPKKITYISCNPATMARDIKLYEELGFKLTKVQPVDLF 436

Query: 351 PYTRHMECGVLLVRK 365
           P T H+E  VL+ R+
Sbjct: 437 PQTHHVETVVLMSRR 451


>gi|257056412|ref|YP_003134244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharomonospora
           viridis DSM 43017]
 gi|256586284|gb|ACU97417.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharomonospora
           viridis DSM 43017]
          Length = 399

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 93/203 (45%), Gaps = 33/203 (16%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           D +L   G   ++ Q  ++F Q        + EW  A+      DL   Y G G F+ VL
Sbjct: 223 DWKLDAHGFWQVHPQAADAFAQ-------VVREWADASPGARAWDL---YAGVGLFASVL 272

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       RVLAVE  + +V   R N+A      ++ VR    +    +R+  +  ++  
Sbjct: 273 AEQVGPKGRVLAVESGRRAVADGRANLA-----GMRQVRWRCGQVEHVLRQRTDTPQV-- 325

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTI 341
                     + +DPPR G     V  +  A P  ++Y++C+P +L RD++I     + +
Sbjct: 326 ----------VVLDPPRKGAGRVVVEAVATAGPDRVVYVACDPAALARDVAIFGEHGYRL 375

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           ++L  FD FP T H+EC  LL R
Sbjct: 376 DKLRAFDAFPMTHHVECVALLRR 398


>gi|15675282|ref|NP_269456.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|94990664|ref|YP_598764.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|50401663|sp|Q99Z86|Y1346_STRP1 RecName: Full=Uncharacterized RNA methyltransferase
           SPy_1346/M5005_Spy1098
 gi|13622457|gb|AAK34177.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|94544172|gb|ABF34220.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 462

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 351 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC VL
Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 458

Query: 362 LVRK 365
           L+++
Sbjct: 459 LIKE 462


>gi|116329018|ref|YP_798738.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121762|gb|ABJ79805.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 393

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 16/155 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++ YCG G  SL +A    +V+ +E    S+ +A     AN + NV   +       Q
Sbjct: 253 NVVDAYCGIGTISLYVASKSKKVVGLEENPNSIRSAVGAAKANGIVNVAFTKGKVLRTLQ 312

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329
               E+                 + +DPPR GLD  T  ++       ILY+SCNP++L 
Sbjct: 313 VALNEKS--------------DVVILDPPREGLDPETKKILLNSKIHKILYVSCNPETLL 358

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD   L+      ++   D FP+T H+E   +  R
Sbjct: 359 RDAVALTKVFKYTKMTPVDLFPHTSHLESVSVFTR 393


>gi|139473609|ref|YP_001128325.1| RNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|134271856|emb|CAM30091.1| putative RNA methyltransferase [Streptococcus pyogenes str.
           Manfredo]
          Length = 462

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 351 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC VL
Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVECVVL 458

Query: 362 LVRK 365
           L+++
Sbjct: 459 LIKE 462


>gi|306830729|ref|ZP_07463893.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304427076|gb|EFM30184.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 450

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G      A     V  ++I   ++  A+ N       N       +++    
Sbjct: 308 VIDAYCGVGTIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLNTILKYQPAKMVYVSCNTATLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  LS  + +  +   D FP+T   E  V LVRK
Sbjct: 416 DLVKLSKVYDVHYIQSVDMFPHTARTEAVVKLVRK 450


>gi|58336957|ref|YP_193542.1| RNA methyltransferase [Lactobacillus acidophilus NCFM]
 gi|227903514|ref|ZP_04021319.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC
           4796]
 gi|58254274|gb|AAV42511.1| RNA methyltransferase family [Lactobacillus acidophilus NCFM]
 gi|227868401|gb|EEJ75822.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC
           4796]
          Length = 460

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V+ A +N+  NH+ N   ++ S+++    
Sbjct: 317 LIDAYSGVGTLGILAADRVKQVIGIETIPEAVKDAEHNVKLNHIKNANYIQGSTEKI--- 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
                    L ++  +      + VDPPR+GL  + +  + +  P   +YISCNP +L +
Sbjct: 374 ---------LPELQNNGVPIDALIVDPPRTGLAKSLIKTILRVKPQTFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 425 DLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLV 457


>gi|27468500|ref|NP_765137.1| RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC
           12228]
 gi|27316047|gb|AAO05181.1|AE016749_127 RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC
           12228]
          Length = 472

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A  N   N + N              
Sbjct: 327 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 375

Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326
                E  + +D+ +       +   + VDPPR G D+     +++  P  I+YISCNP 
Sbjct: 376 -----ECGKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 430

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD  IL+  + +  +   D FP T H+E   L VRK
Sbjct: 431 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 469


>gi|329734762|gb|EGG71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis VCU045]
          Length = 456

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A  N   N + N              
Sbjct: 311 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 359

Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326
                E  + +D+ +       +   + VDPPR G D+     +++  P  I+YISCNP 
Sbjct: 360 -----ECGKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 414

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD  IL+  + +  +   D FP T H+E   L VRK
Sbjct: 415 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 453


>gi|322387316|ref|ZP_08060926.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141845|gb|EFX37340.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 455

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKENAKRMGYTNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTIVKYAPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLTKRKS 452


>gi|293367789|ref|ZP_06614438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291318128|gb|EFE58525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 487

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 22/159 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L +A     V  VE+   +++ A  N   N + N              
Sbjct: 342 VLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTF----------- 390

Query: 273 MRREREFNRLKDIDI----HSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPD 326
                E  + +D+ +       +   + VDPPR G D+     +++  P  I+YISCNP 
Sbjct: 391 -----ECGKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPS 445

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RD  IL+  + +  +   D FP T H+E   L VRK
Sbjct: 446 TQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRK 484


>gi|86604758|ref|YP_473521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           JA-3-3Ab]
 gi|86553300|gb|ABC98258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           JA-3-3Ab]
          Length = 464

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            SF Q N         W++   + ++G+  +L+ YCG G  +L+LAR   R + VE+   
Sbjct: 295 TSFFQVNTEQAEAFFTWIVDQLQ-LRGEEIVLDAYCGIGTLTLLLARRAKRAIGVEVLPA 353

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V  ARYN   N +        S++ F  A+  E     L   DI       + +DPPR 
Sbjct: 354 AVAQARYNAQFNGIP-------SAQFFQGAV--ETVLPTLPPADI-------VVLDPPRR 397

Query: 303 GLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358
           G +   + ++ Q  P  ++YISC+P +L RDL IL    ++ + +    D FP T H+E 
Sbjct: 398 GCERQVLEILKQRQPQRLVYISCHPATLARDLQILMAEGSYRLTQWRAADFFPQTGHVEG 457

Query: 359 GVLLVR 364
              L R
Sbjct: 458 VAFLER 463


>gi|331269931|ref|YP_004396423.1| RNA methyltransferase, TrmA family [Clostridium botulinum
           BKT015925]
 gi|329126481|gb|AEB76426.1| RNA methyltransferase, TrmA family [Clostridium botulinum
           BKT015925]
          Length = 450

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 31/236 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L+  LH     +  + +A+  ++   RDY+ E +      L ++    SF Q N     
Sbjct: 238 ELKGILHTVNDSLSDVVQADSMEVLFGRDYIMEEVL----GLKFKISPFSFFQTNT---- 289

Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              E + +  +   GD     + +LYCG G    + A +  +V+ +E+ + + +AA  N 
Sbjct: 290 KGAEALYSIVRDFMGDAKSKVVFDLYCGTGTIGQIAAHNASKVIGIELIEEAAKAANENA 349

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N +NN + +     +             +KDI +       I +DPPR G+    +  
Sbjct: 350 KLNGLNNCEFLAGDVAKV------------IKDIKVKP---DIIILDPPRPGVHPDALKY 394

Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           V  +    I+Y+SCNP +L  DL  L    + +E++ + D FP+T H+E  V L +
Sbjct: 395 VTKFNAKDIIYVSCNPKTLVEDLKFLIKEGYKVEKVKIKDMFPHTPHVETVVRLSK 450


>gi|326773057|ref|ZP_08232341.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces viscosus
           C505]
 gi|326637689|gb|EGE38591.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces viscosus
           C505]
          Length = 408

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 16/155 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE--FTQ 271
           +L+CG G+F+L LA    +VL VE++ P+++ AR   AA+ +  +  +VR  + +     
Sbjct: 264 DLFCGVGSFALALAAPGRQVLGVEVSAPAIDGARA--AADLMGLDPALVRFEAGDARVLD 321

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329
               ER    ++  D+       + V+PPR G+ +     ++A     +LY SCNP +L 
Sbjct: 322 PAAGERAGG-VQHPDL-------LVVNPPRRGIGEQLATRIEASGVERVLYSSCNPRTLA 373

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            DL+ L +   + R  LFD FP+T H E  V LVR
Sbjct: 374 TDLAHLPSMRVV-RSRLFDMFPHTEHAEVLVELVR 407


>gi|227519503|ref|ZP_03949552.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104]
 gi|227073028|gb|EEI10991.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104]
          Length = 456

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + +  L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVNYLQSVDMFPQTARCEVVVKLTRK 456


>gi|325977645|ref|YP_004287361.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177573|emb|CBZ47617.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 450

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G      A     V  ++I   ++  A+ N       N       +++    
Sbjct: 308 VIDAYCGVGTIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLNTILKYQPAKMVYVSCNTATLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  LS  + +  +   D FP+T   E  V LVRK
Sbjct: 416 DLVKLSKVYDVHYIQSVDMFPHTARTEAVVKLVRK 450


>gi|302522366|ref|ZP_07274708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp.
           SPB78]
 gi|302431261|gb|EFL03077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp.
           SPB78]
          Length = 447

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 22/155 (14%)

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  LA        VL +E +K +VE AR+N+A +H      VR+   +  
Sbjct: 302 LDLYCGVGLFAGALADRVGEKGAVLGIETSKRAVEDARHNLA-DHPR----VRIEQGKVD 356

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328
           Q + R      + + D+       I +DPPR+G   +TV  +    P  I YI+C+P +L
Sbjct: 357 QVLPR----TGITEADL-------IVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAAL 405

Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
            RDL       + +  L  FD FP T+H EC  +L
Sbjct: 406 ARDLKHFAENGYRVRVLRAFDLFPMTQHFECVAIL 440


>gi|169351042|ref|ZP_02867980.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552]
 gi|169292104|gb|EDS74237.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552]
          Length = 379

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 17/159 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  +++ YCG G   +V A+    V+ VE+ + +++ A  N   N + N++ V   +
Sbjct: 229 LKGDEIVIDAYCGIGTIGMVAAKKAKEVIGVELNQDAIKDANNNARMNKIGNIRFVNDDA 288

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCN 324
             F   + + ++            R   + +DPPRSG     +  ++      ++YISC+
Sbjct: 289 SNFMAVLAKTKQ------------RVDCVIMDPPRSGSTKEFMDAIKILNPKKVVYISCD 336

Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           P +  RD+   S   +    L  FD FP+T H E  VLL
Sbjct: 337 PTTQIRDIKYFSKLGYRGNVLYPFDMFPHTIHTETIVLL 375


>gi|322385946|ref|ZP_08059586.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
           ATCC 51100]
 gi|321269929|gb|EFX52849.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
           ATCC 51100]
          Length = 452

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V LV+K
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLVKK 450


>gi|315150202|gb|EFT94218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0012]
          Length = 456

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + +  L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVNYLQSVDMFPQTARCEVVVKLTRK 456


>gi|239982797|ref|ZP_04705321.1| RNA methyltransferase [Streptomyces albus J1074]
 gi|291454644|ref|ZP_06594034.1| RNA methyltransferase [Streptomyces albus J1074]
 gi|291357593|gb|EFE84495.1| RNA methyltransferase [Streptomyces albus J1074]
          Length = 433

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 23/190 (12%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA-RHFDR--VL 235
           +R     F Q +      ++E V+      +GD  L+LYCG G F+  LA R  D+  VL
Sbjct: 253 WRVGNGGFWQVHPKAADTLVEAVMQGLLPRKGDTALDLYCGVGLFAGALADRVGDKGAVL 312

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E+ K +VE AR+N+      +   VR+   +  Q + R      + + D+       I
Sbjct: 313 GIEVTKRAVEDARHNL-----KDFDRVRVEQGKVEQVLPR----TGITETDL-------I 356

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPR+G    TV  + +     I Y++C+P +L RDL       + +  +  FD FP 
Sbjct: 357 VLDPPRAGAGKQTVARLCSLGARRIAYVACDPAALARDLGYFREGGYRVRVMRAFDLFPM 416

Query: 353 TRHMECGVLL 362
           T H+EC  +L
Sbjct: 417 THHVECVAIL 426


>gi|19746322|ref|NP_607458.1| RNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|50401606|sp|Q8P0H4|Y1360_STRP8 RecName: Full=Uncharacterized RNA methyltransferase spyM18_1360
 gi|19748514|gb|AAL97957.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS8232]
          Length = 462

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 351 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC VL
Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 458

Query: 362 LVRK 365
           L+++
Sbjct: 459 LIKE 462


>gi|319943746|ref|ZP_08018027.1| 23S rRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC
           51599]
 gi|319742979|gb|EFV95385.1| 23S rRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC
           51599]
          Length = 473

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 12/184 (6%)

Query: 187 FTQPNAGINVHMLE-WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ NAGIN  +L   V       +  +++L+CG GNF+L LA    +V+ VE  K  VE
Sbjct: 292 FTQVNAGINRQLLSRAVQMLDPRPEHRVVDLFCGLGNFTLPLATRARQVIGVEGVKALVE 351

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
             R N  AN    +        +F  A     EF+R     +   R   + +DPPR G  
Sbjct: 352 RGRQNALANRHALLAPPGNDGVQFRVA--NLFEFDRAAWQALG--RVDRLLIDPPRDGAL 407

Query: 306 DATVGMVQAYPH-----ILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHMEC 358
                +    P      ++Y+SCNP +L RDL ++       +    + + FP+T H+E 
Sbjct: 408 AVARVLAALPPEQRPARMVYVSCNPATLARDLGLMVNEGKWRVRMAGVANMFPHTAHVES 467

Query: 359 GVLL 362
             LL
Sbjct: 468 IALL 471


>gi|85712955|ref|ZP_01043994.1| SAM-dependent methyltransferase [Idiomarina baltica OS145]
 gi|85693193|gb|EAQ31152.1| SAM-dependent methyltransferase [Idiomarina baltica OS145]
          Length = 446

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 33/207 (15%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +C D        T+ G  L++  +  +F Q NA +N  M++  L       + ++L+L+ 
Sbjct: 255 VCFDE-------TIDGDRLVF--MPGNFIQVNAKVNQQMVKQALNWLAPQAEDEILDLFA 305

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV--KIVRMSSKEFTQAMRRE 276
           G GNF+L LAR    V AVE           N AA  ++NV  +   +S+ + ++ +++ 
Sbjct: 306 GIGNFTLPLARRVKSVTAVEGVSAMTTQLAANAAAADLSNVHAQTFDLSTDQVSRLLKKG 365

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRD 331
                          F+ + +DP R+G +    G+ Q         I+Y+SC+PD+L RD
Sbjct: 366 ---------------FQRVLLDPARAGAEKVCQGIAQLEADKQPVQIVYVSCSPDTLARD 410

Query: 332 LS-ILSTTHTIERLALFDQFPYTRHME 357
              +L   + I  ++L D F  T H+E
Sbjct: 411 SRWLLDNGYEITHISLVDMFVQTHHIE 437


>gi|333023959|ref|ZP_08452023.1| putative RNA methyltransferase [Streptomyces sp. Tu6071]
 gi|332743811|gb|EGJ74252.1| putative RNA methyltransferase [Streptomyces sp. Tu6071]
          Length = 433

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 22/155 (14%)

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  LA        VL +E +K +VE AR+N+A +       VR+   +  
Sbjct: 288 LDLYCGVGLFAGALADRVGEKGAVLGIETSKRAVEDARHNLAEH-----PRVRIEQGKVD 342

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328
           Q + R      + + D+       I +DPPR+G   +TV  +    P  I YI+C+P +L
Sbjct: 343 QVLPR----TGITEADL-------IVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAAL 391

Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
            RDL       + +  L  FD FP T+H EC  +L
Sbjct: 392 ARDLKHFAENGYRVRVLRAFDLFPMTQHFECVAIL 426


>gi|315221991|ref|ZP_07863902.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus F0211]
 gi|315188957|gb|EFU22661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus F0211]
          Length = 452

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++     
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKKMGFDNAYYEAGTAESIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDEKLLETIVRYAPKKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  LS  + +  +   D FP+T   E  V LV+K
Sbjct: 416 DLVQLSKVYDVHYIQSVDMFPHTARTEAVVKLVKK 450


>gi|78357737|ref|YP_389186.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220142|gb|ABB39491.1| 23S rRNA m(5)U-747 methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 457

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 102/240 (42%), Gaps = 22/240 (9%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L D   E    +   +H  +        A KT       ++ E+L   GRT  +    
Sbjct: 235 RQLGDLLAESGEGITSFIHGERRSPVQAAYAEKTLYSTGDSHLTEQLN--GRT--FTMAP 290

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           ++F Q N      +L    A   G  G L +LYCG G   L +A     V  +E+++ +V
Sbjct: 291 HAFFQTNTAAT-EILSRTAADYAGQGGVLWDLYCGVGTMGLGMADQVTSVTGMEVSEEAV 349

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A  N               +++  QA     +  RL  +  H  +   +  DPPR+G+
Sbjct: 350 QFATLN-------------ARNQQVPQARFLAGDVRRL--LIRHKEKPDIVITDPPRAGM 394

Query: 305 -DDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
             D    ++   P  I+YISC+P +  RD + L+ ++ +E +   D FP++ H+E   L 
Sbjct: 395 HPDVLSALISRAPRKIVYISCDPATQARDAAALTDSYRLEAVQPVDMFPHSAHIESVALF 454


>gi|260161759|emb|CAZ39303.1| hypothetical protein [Streptococcus suis]
 gi|313575341|emb|CBR26870.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus phage
           phi-SsUD.1]
          Length = 451

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  ++ N A N ++NV  V  S++   Q 
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              +              +   IFVDPPR GL ++ +       P  I+YISCN  ++ R
Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + + ++   D FP T H+EC  LLV+
Sbjct: 416 DIKLYEELGYKLTKVQPADLFPNTHHVECVALLVK 450


>gi|57641051|ref|YP_183529.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
 gi|57159375|dbj|BAD85305.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
          Length = 421

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 31/204 (15%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223
           Y+ ER+      + Y    NSF Q N+    + L  ++ A +       +L+LY G G F
Sbjct: 244 YIHERIG----EVTYLIHPNSFFQTNS----YALPLLIKAVENFASGEMILDLYAGVGTF 295

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA+   +V  +E+   +VE A  N   N+V+    V                  R +
Sbjct: 296 GVWLAKRRFQVEGIELNPFAVEIANKNAEINNVDATFKV-----------------GRAE 338

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTI 341
           +  I  Y   T+ VDPPR GL +    + ++    ++Y+SCNP +   D  + L   +TI
Sbjct: 339 ETPIGKY--DTVVVDPPRKGLKEVAETLARSEIGKVVYVSCNPKAFKLDYENHLKKAYTI 396

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E   L D FP+T H+E  + L RK
Sbjct: 397 EDAVLIDMFPHTPHVEAVISLKRK 420


>gi|167762843|ref|ZP_02434970.1| hypothetical protein BACSTE_01201 [Bacteroides stercoris ATCC
           43183]
 gi|167699183|gb|EDS15762.1| hypothetical protein BACSTE_01201 [Bacteroides stercoris ATCC
           43183]
          Length = 480

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 29/211 (13%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNG 221
           T  G+  I+ ++E         SF Q N+    + L  V     G+ G+ L  +LY G G
Sbjct: 279 TFKGKDHIFEEMEGLRFKVGPKSFYQTNSE-QAYTLYKVARNFAGLTGNELVYDLYTGTG 337

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFN 280
             +  ++    +V+ +E    ++E A+ N   N + N        K+  TQ         
Sbjct: 338 TIANFVSGQARQVIGIEYVPEAIEDAKVNSEINGIRNTLFFAGDMKDMLTQDF------- 390

Query: 281 RLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST 337
                 I+ Y R   I  DPPR+G+    V ++  A P  I+Y+SCNP +  RDL +L  
Sbjct: 391 ------INEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQLLDA 444

Query: 338 THTIERLALFDQFPYTRHMECGVLL-VRKPS 367
            + ++ +   D FP+T H+E  VLL ++ P+
Sbjct: 445 KYRVKAVQPVDMFPHTHHVENVVLLELKNPA 475


>gi|71910911|ref|YP_282461.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|71853693|gb|AAZ51716.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|290770987|emb|CBK33775.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
          Length = 451

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 280 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 339

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 340 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 387

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC VL
Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVVL 447

Query: 362 LVRK 365
           L+++
Sbjct: 448 LIKE 451


>gi|319757720|gb|ADV69662.1| hypothetical protein SSUJS14_0565 [Streptococcus suis JS14]
          Length = 453

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  ++ N A N ++NV  V  S++   Q 
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              +              +   IFVDPPR GL ++ +       P  I+YISCN  ++ R
Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + + ++   D FP T H+EC VLL R
Sbjct: 416 DIKLYEELGYKLTKVQPADLFPNTHHVECVVLLQR 450


>gi|227432576|ref|ZP_03914556.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227351659|gb|EEJ41905.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 463

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 25/183 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N       + + LAA K        +++ Y G G   + +A    +VL VE+  
Sbjct: 290 NSFYQVNP--QTTEVLYALAAQKADLKPTDTVIDAYSGIGTIGISVASRVKKVLGVEVVP 347

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A+ N+  N+++N + +   +           +F + ++      +   +FVDPPR
Sbjct: 348 GAVADAQLNLQVNNISNAEYILADAP---------VQFKKWQE---QGLKPDVVFVDPPR 395

Query: 302 SGLD----DATVGMVQAYPHILYISCNPDSLCRD-LSILSTTHTIERLAL-FDQFPYTRH 355
            GL     +AT  M  +   I+YISCNP +L RD + I+   + I+   L  DQFP T H
Sbjct: 396 RGLTTSLINATTDM--SPEKIVYISCNPVTLSRDAVEIIENGYHIDGSVLPVDQFPQTSH 453

Query: 356 MEC 358
           +E 
Sbjct: 454 VES 456


>gi|328887534|emb|CAJ67227.2| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile]
          Length = 453

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 31/222 (13%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           + ++ ++   RDY+ E +      L ++    SF Q N        E + +  +   GD 
Sbjct: 255 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 306

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +
Sbjct: 307 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 366

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             + ++ + +                I VDPPR G+    +  +  +    I+YISCNP 
Sbjct: 367 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 411

Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           SL  DL       + I+ +   D FP T H+EC  L+ R  S
Sbjct: 412 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHVECIALIQRVKS 453


>gi|327389388|gb|EGE87733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA04375]
          Length = 451

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   NH++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNTHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+E   LLV++
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVKE 451


>gi|126697975|ref|YP_001086872.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           630]
          Length = 455

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 31/222 (13%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           + ++ ++   RDY+ E +      L ++    SF Q N        E + +  +   GD 
Sbjct: 257 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 308

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +
Sbjct: 309 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 368

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             + ++ + +                I VDPPR G+    +  +  +    I+YISCNP 
Sbjct: 369 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 413

Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           SL  DL       + I+ +   D FP T H+EC  L+ R  S
Sbjct: 414 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHVECIALIQRVKS 455


>gi|223932232|ref|ZP_03624236.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591]
 gi|223899213|gb|EEF65570.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591]
          Length = 453

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  ++ N A N ++NV  V  S++   Q 
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              +              +   IFVDPPR GL ++ +       P  I+YISCN  ++ R
Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + + ++   D FP T H+EC VLL R
Sbjct: 416 DIKLYEELGYKLTKVQPTDLFPNTHHVECVVLLQR 450


>gi|268318102|ref|YP_003291821.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252]
 gi|262335636|gb|ACY49433.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252]
          Length = 466

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271
           + +LYCG G  S+ +A H   V+ VE+   +VE AR N AAN + N   V     E  T 
Sbjct: 323 VYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITNCTFVAGDLLEVLTP 382

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329
           A  R            H  R   + VDPPR+G+    V  + Q  P   +Y+SCNP +  
Sbjct: 383 AFVR-----------THG-RPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNPQTQA 430

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           RDL +L   + IE +   D FP+T H+E  V L
Sbjct: 431 RDLKLLRDLYRIEAVQPVDLFPHTDHVESVVAL 463


>gi|284042250|ref|YP_003392590.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684]
 gi|283946471|gb|ADB49215.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684]
          Length = 456

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 22/214 (10%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI--NVHMLEWVLAATKGIQGDL 213
             T++    DY++E L      + +R   N+F Q N  +   ++ L    A+  G +  L
Sbjct: 259 GDTELIAGSDYLEEELN----GMSFRVSPNAFFQVNTEMAEKLYALAGDYASLAGFE-RL 313

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G   L +A     +  +EI + ++  A  N   N ++N    R  + +   A+
Sbjct: 314 YDLYCGIGTVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDN---ARFFAGDVRTAL 370

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRD 331
           R   +     D+         + VDPPR+GL    V  ++ A P  ++YISCNP +L  +
Sbjct: 371 RLLVDTAGSPDV---------VVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPN 421

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            + L+   + + ++   D FP T H+EC  L  R
Sbjct: 422 GAQLAEAGYVLRKVRPVDMFPQTPHIECVALFER 455


>gi|168204451|ref|ZP_02630456.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
           JGS1987]
 gi|170664028|gb|EDT16711.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
           JGS1987]
          Length = 455

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 17/158 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ + YCG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+    
Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L 
Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLG 418

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +L      T+E +   D FP T H+E    L++K
Sbjct: 419 RDLKVLEENGYKTLE-VQPVDMFPNTSHVENVAKLIKK 455


>gi|37522703|ref|NP_926080.1| hypothetical protein gll3134 [Gloeobacter violaceus PCC 7421]
 gi|50401751|sp|Q7NGN4|Y3134_GLOVI RecName: Full=Uncharacterized RNA methyltransferase gll3134
 gi|35213705|dbj|BAC91075.1| gll3134 [Gloeobacter violaceus PCC 7421]
          Length = 457

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 20/156 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LAR    V+ +E    SVE AR N   N + N + +  + +     
Sbjct: 319 VVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIENCRFLAGTVEAL--- 375

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                    L D+     R   + VDPPR G D   +  ++ A P  ++Y+SCNP +L R
Sbjct: 376 ---------LPDL-----RADIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLAR 421

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  +++  + +  +   D F  T H+EC   L R 
Sbjct: 422 DLKRLVAGGYCLVGVQPVDLFAQTHHVECVATLERS 457


>gi|323466981|gb|ADX70668.1| RNA methyltransferase family protein [Lactobacillus helveticus H10]
          Length = 460

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S       
Sbjct: 317 LIDAYSGVGTLGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGSV------ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
              E+    LK+  +       + VDPPR+GL    +  ++Q  P   +YISCNP +L +
Sbjct: 371 ---EKVLPELKNSGV---SIDALIVDPPRTGLAKKLIKTLLQVKPETFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC-GVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 425 DLVLLSEVYDVRVIQNVDMLPQTPRCEAIAKLVLRK 460


>gi|293373836|ref|ZP_06620180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
           CMC 3f]
 gi|292631235|gb|EFF49869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
           CMC 3f]
          Length = 462

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 26/201 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           G+  I+ ++E         SF Q N+    N++ +    A   G +  + +LY G G  +
Sbjct: 272 GKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARNFAELTGNEL-VYDLYTGTGTIA 330

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             ++R   +V+ +E    ++E A+ N   N + N        K+  TQ            
Sbjct: 331 NFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKDMLTQDF---------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTI 341
            I+ H  R   I  DPPR+G+    + ++  A P  I+Y+SCNP +  RDL +L+  + +
Sbjct: 381 -INQHG-RPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDLQLLNEKYKV 438

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           + +   D FP+T H+E  VLL
Sbjct: 439 KAVQPVDMFPHTHHVENVVLL 459


>gi|297626449|ref|YP_003688212.1| SAM-dependent methyltransferase related to tRNA (tRNA
           (uracil-5-)-methyltransferase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922214|emb|CBL56784.1| SAM-dependent methyltransferase related to tRNA (tRNA
           (uracil-5-)-methyltransferase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 392

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 36/234 (15%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI--------ENSFT 188
           ++ D+L  + +  +LI     + +C+    +D   T+ G  ++  Q+         + F 
Sbjct: 175 KMLDSLAGQVHGDELIVATAASGVCV----IDSGRTLMGEAVVTEQVGTHSFRARADGFW 230

Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           QP+      +   +L A     G+  L+LYCG G F+  L     RV  +E+  P++  A
Sbjct: 231 QPHRLAPGLLTSQMLLALDPRPGEHALDLYCGVGVFAAALDDAGCRVRGIEMDGPAIRLA 290

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           R N+                +F  A R +R  +R +      +R   + +DPPR+G    
Sbjct: 291 RTNV-------------PRAQFV-AGRVDRVLSRGR------HRADLVVLDPPRAGAGKR 330

Query: 308 TVGMVQAY-P-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMEC 358
            V  +    P  I Y++C+P +L RDL S     +++  +  FD FP T H+EC
Sbjct: 331 AVDQIAGLRPRRIAYVACDPAALARDLASFARHDYSVTNIKGFDLFPMTHHVEC 384


>gi|320547084|ref|ZP_08041380.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
           9812]
 gi|320448210|gb|EFW88957.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
           9812]
          Length = 455

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A++   V  VE+ + +VE A+ N A N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMAT 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328
             +            +  +   I VDPPR GL +    A+V M      + YISCNP ++
Sbjct: 368 WSK------------NGIKPSVILVDPPRKGLTENFIKASVAMQPE--KVTYISCNPATM 413

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +     + ++++   D FP T H+E  VLL +
Sbjct: 414 ARDIKLYQELGYKLQKVQPVDLFPNTHHVETVVLLSK 450


>gi|218262095|ref|ZP_03476683.1| hypothetical protein PRABACTJOHN_02355 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223595|gb|EEC96245.1| hypothetical protein PRABACTJOHN_02355 [Parabacteroides johnsonii
           DSM 18315]
          Length = 475

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 18/168 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+G   + L  V     G+ G+  + +LY G G  +  ++R   +V+ +E    +
Sbjct: 321 SFYQTNSG-QAYELYKVAREFAGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEA 379

Query: 244 VEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +E A+ N A N + N        K+  TQ             I+ H  R   I  DPPR+
Sbjct: 380 IEDAKVNSALNKIENTLFYAGDMKDILTQDF-----------INQHG-RPDVIITDPPRA 427

Query: 303 GL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFD 348
           G+ DD    ++ A P  I+Y+SCNP +  RDLS+LS  + ++++   D
Sbjct: 428 GMHDDVINTILFAEPERIVYVSCNPATQARDLSLLSVKYAVKKVQPVD 475


>gi|210632813|ref|ZP_03297546.1| hypothetical protein COLSTE_01449 [Collinsella stercoris DSM 13279]
 gi|210159372|gb|EEA90343.1| hypothetical protein COLSTE_01449 [Collinsella stercoris DSM 13279]
          Length = 437

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 21/155 (13%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++LYCG G F+L LAR  + V AVE   P+V   R N+   ++ NV ++   +       
Sbjct: 299 IDLYCGAGTFTLPLARRCEFVSAVESYGPAVRDLRRNLDIANITNVDVIGGDAV------ 352

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
              REF   +D D+       + VDPPR+GL    + ++ +     + Y+SC+P +L RD
Sbjct: 353 ---REFPD-EDADV-------LVVDPPRAGLAPEAIDLIASTSARDVAYVSCDPATLARD 401

Query: 332 LSILSTTHTIERL--ALFDQFPYTRHMECGVLLVR 364
           L       T   +     D FP T H E  V L R
Sbjct: 402 LRRFVEEGTFRPVWATPVDLFPQTFHCETVVRLTR 436


>gi|320528187|ref|ZP_08029352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
 gi|320131535|gb|EFW24100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
          Length = 434

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 15/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+E YCG G  +L+     + V  +E    +VE A  N   N++ N + +         A
Sbjct: 293 LVEAYCGIGTMALMAKDKANVVYGIESVPSAVENATNNAKLNNITNTEFI------CDDA 346

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
               R+    K +D        + VDPPRSG+DD  +  +    P  I+YISCNP +L +
Sbjct: 347 AHGLRKIAMKKTVD-------CLLVDPPRSGMDDEMLNTIMHVLPKKIIYISCNPSTLAK 399

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +L +L   + +  +  +D FP T  +E   +L
Sbjct: 400 NLKVLKQRYHVVTVIPYDLFPQTPLVESITVL 431


>gi|318059413|ref|ZP_07978136.1| RNA methyltransferase [Streptomyces sp. SA3_actG]
 gi|318077256|ref|ZP_07984588.1| RNA methyltransferase [Streptomyces sp. SA3_actF]
          Length = 447

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 22/155 (14%)

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  LA        VL +E +K +VE AR+N+A +       VR+   +  
Sbjct: 302 LDLYCGVGLFAGALADRVGEKGAVLGIETSKRAVEDARHNLAEH-----PRVRIEQGKVD 356

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328
           Q + R      + + D+       I +DPPR+G   +TV  +    P  I YI+C+P +L
Sbjct: 357 QVLPR----TGITEADL-------IVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAAL 405

Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
            RDL       + +  L  FD FP T+H EC  +L
Sbjct: 406 ARDLKHFAENGYRVRVLRAFDLFPMTQHFECVAIL 440


>gi|319427485|gb|ADV55559.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella
           putrefaciens 200]
          Length = 389

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV    +     L +L+CG G F L  A     +  +EI 
Sbjct: 220 KSFFQTNPQVAAQLYQTAREWV---AEFAPKSLWDLFCGVGGFGLHCATKDIALTGIEIE 276

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     +  V+ + + S +F Q        N     D+       I V+PP
Sbjct: 277 AEAISCAQMSANLMGLEKVQFMALDSTDFAQGK------NAADKPDL-------IIVNPP 323

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ +A    +  +    ILY SCNP +L +DL  +   H + ++ LFD FP+T H E 
Sbjct: 324 RRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHTDHFEV 382

Query: 359 GVLLVR 364
             +LV+
Sbjct: 383 LAMLVK 388


>gi|116493460|ref|YP_805195.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103610|gb|ABJ68753.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC
           25745]
          Length = 491

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 16/157 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L++ Y G G   L LA     V  ++  + ++E A  N   N + N      +  EF  
Sbjct: 348 NLVDAYSGVGTIGLSLAAQAKEVRGMDNIESAIEDANENAKINGIEN------AHYEFGT 401

Query: 272 AMRREREFNRLKDIDIHS-YRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSL 328
           A +   ++       +H+ ++  +I VDPPR GLD+  +  ++++ P H  Y+SCNP +L
Sbjct: 402 AEKVLPKW-------LHAGFKPNSIVVDPPRVGLDNKLITAILESAPEHFTYVSCNPSTL 454

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL  +   + +E +   D FP T  +E  V L RK
Sbjct: 455 ARDLVRIVEKYDVEYIQSIDMFPQTARVEAVVKLKRK 491


>gi|257084323|ref|ZP_05578684.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           Fly1]
 gi|256992353|gb|EEU79655.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           Fly1]
          Length = 456

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA+   +V  ++    +++ AR+N     V N      ++++    
Sbjct: 314 VVDAYCGVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVMNTHYAVGTAEDLLPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR+GLD    T  + Q    ++YISCN  +L R
Sbjct: 374 WFKE------------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 422 DLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|146421938|ref|XP_001486912.1| hypothetical protein PGUG_00289 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 568

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 114/224 (50%), Gaps = 25/224 (11%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQ 210
           G ++KT +   +    E++  +    I++   N F Q N+ I   ++++V    ++KGI+
Sbjct: 355 GESSKTCLTDSKKVCTEKIGES----IFQFPANEFFQVNSSILPDVVDFVRYSMSSKGIR 410

Query: 211 GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV---NNVKIVRMS 265
            ++++ YCG+G F + LA      +V+ +EI++ +++ A +N   N +    +V+ +  +
Sbjct: 411 -NIVDAYCGSGFFGISLANDVKNGKVVGIEISRQAIKYATHNAKLNGLAVPQHVQFIEGT 469

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISC 323
           S     A+ +   F   K     +     + +DP R G D++ +  +  + P  I+Y+SC
Sbjct: 470 SN----AIFKHESFLSAK----LNPEETMVIIDPSRKGSDESFLQQLHEFGPKLIVYVSC 521

Query: 324 NPDSLCRDLSILST---THTIERLALFDQFPYTRHMECGVLLVR 364
           N  S  RDL   +     +T+  +  FD FP T+H+EC  +L R
Sbjct: 522 NVFSQARDLQYFTAMLQKYTVHEVIGFDFFPQTKHVECVAVLER 565


>gi|253681845|ref|ZP_04862642.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           botulinum D str. 1873]
 gi|253561557|gb|EES91009.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           botulinum D str. 1873]
          Length = 450

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 31/236 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L+  LH     +  + +A+  ++   RDY+ E +      L ++    SF Q N     
Sbjct: 238 ELKGILHTVNDSLSDVVQADSMEVLFGRDYIMEEVL----GLKFKISPFSFFQTNT---- 289

Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              E + +  +   GD     + +LYCG G    + A + ++V+ +E+ + + +AA  N 
Sbjct: 290 KGAEALYSIVRDFMGDAKSKVVFDLYCGTGTIGQIAAHNAEKVIGIELIEEAAKAANENA 349

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N +NN + +     +             +KDI +       I +DPPR G+    +  
Sbjct: 350 KLNCLNNCEFLAGDVAKV------------IKDIKVKP---DIIILDPPRPGVHPDALKY 394

Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           V  +    I+Y+SCNP +L  DL  L    + +E++ + D FP+T H+E  V L +
Sbjct: 395 VTKFNANDIIYVSCNPKTLVEDLKFLIKEGYKVEKVKVKDMFPHTPHVESVVKLSK 450


>gi|261418755|ref|YP_003252437.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|319765571|ref|YP_004131072.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
 gi|261375212|gb|ACX77955.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|317110437|gb|ADU92929.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
          Length = 467

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 21/208 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGD 212
            ++T++    +Y+ E L      L +     +F Q N    V + + V   AA  G +  
Sbjct: 269 GDETEVLAGDEYIQETLG----DLSFELSSRAFFQLNPLQTVKLYDEVKKAAALTGTE-R 323

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LAR    V  ++    ++E A+ N   +   N   V   ++ +   
Sbjct: 324 IVDAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAEYWLPK 383

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
             +              ++   I VDPPR G D A +  ++   P  ++Y+SCNP SL R
Sbjct: 384 WVK------------GGWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLAR 431

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           DL  L+  + ++ +   D FP+T H+E 
Sbjct: 432 DLDALAAQYRVDYIQPVDMFPHTAHVEA 459


>gi|288871274|ref|ZP_06117059.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
 gi|288864049|gb|EFC96347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
          Length = 514

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 18/188 (9%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237
           +R    SF Q N  +   +L        G+ G   +++ YCG G   +V ++  DRV+ V
Sbjct: 332 FRISSKSFYQVNP-VQTEVLYRKAIELAGLTGKETVIDAYCGIGTIGIVASQEADRVIGV 390

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+ + +V  A  N   N + N +     +  F   M    E      +D+       +F+
Sbjct: 391 ELNRDAVRDAAQNAKINGIKNAQFYCNDAGAFMSKMADNGEH-----VDV-------VFM 438

Query: 298 DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLAL-FDQFPYTR 354
           DPPRSG  +  +  + +  P  ++Y+SC P++L RDL +        ++A   D FP   
Sbjct: 439 DPPRSGSTEEFIQSVAKIKPEKVVYVSCGPETLARDLGVFRKMGYEAKVAWGVDMFPQAA 498

Query: 355 HMECGVLL 362
           H+E  +++
Sbjct: 499 HVESVIMM 506


>gi|15613460|ref|NP_241763.1| RNA methyltransferase [Bacillus halodurans C-125]
 gi|50401683|sp|Q9KEF5|Y897_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0897
 gi|10173512|dbj|BAB04616.1| RNA methyltransferase [Bacillus halodurans C-125]
          Length = 463

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 15/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA     V  +++   ++E A+ N     + NV+     +++   +
Sbjct: 318 VIDAYCGVGTIGLWLADQAREVRGMDVIAEAIEDAKENAKRQGITNVQYEVGKAEKIIPS 377

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
             R             S+    I VDPPR+G DD  +  + Q  P  I+Y+SCNP +L +
Sbjct: 378 WVR------------SSWIPDVIVVDPPRTGCDDQLLKTIKQTKPKRIVYVSCNPSTLAK 425

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           D+  L  + + ++ +   D FP+T  +E   LLV
Sbjct: 426 DVEQLQRSGYKVKNIQPVDMFPWTAQVESCTLLV 459


>gi|326798666|ref|YP_004316485.1| RNA methyltransferase, TrmA family [Sphingobacterium sp. 21]
 gi|326549430|gb|ADZ77815.1| RNA methyltransferase, TrmA family [Sphingobacterium sp. 21]
          Length = 476

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 18/205 (8%)

Query: 164 RDYVDERLTVAGRT--LIYRQIENSFTQPNA--GINVHMLEWVLAATKGIQGDLLELYCG 219
           +D++ E +++  R+  L ++    SF Q N+     ++ +    A  KG +  + +LY G
Sbjct: 280 KDHIFEEMSLPNRSVRLRFKIGAKSFYQTNSEQAYELYRITKEFANLKGHEL-VYDLYTG 338

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +  +A    +V+ +E    ++E A+ N + N + N        K+         EF
Sbjct: 339 AGTIANFVALDVKQVIGIEYVPSAIEDAKLNSSINGIENTLFFAGDMKDVLTP-----EF 393

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST 337
                      +   I  DPPR+G+    +   +    P I+Y+SCN  +  RDL++L+ 
Sbjct: 394 TATHG------KPDLIITDPPRAGMHPDVIARLLELEAPRIVYVSCNAATQARDLALLNE 447

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            + ++R+   D FP+T+H+E  VLL
Sbjct: 448 KYLVKRIKPVDMFPHTQHVENVVLL 472


>gi|306831715|ref|ZP_07464872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325978654|ref|YP_004288370.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|304426140|gb|EFM29255.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325178582|emb|CBZ48626.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 453

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A++   V  VE+ + +VE A+ N A N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMAT 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328
             ++              +   I VDPPR GL +    A+V M      I YISCNP S+
Sbjct: 368 WSKD------------GIKPSVILVDPPRKGLTENFIKASVAMQPE--KITYISCNPASM 413

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +     + + ++   D FP T H+E  VL+ R
Sbjct: 414 ARDIKLYQELGYKLIKVQPVDLFPNTHHVETVVLMSR 450


>gi|120597721|ref|YP_962295.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. W3-18-1]
 gi|143582979|sp|A1RGE6|RUMB_SHESW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|120557814|gb|ABM23741.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp.
           W3-18-1]
          Length = 389

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV    +     L +L+CG G F L  A     +  +EI 
Sbjct: 220 KSFFQTNPQVAAQLYQTAREWV---AEFAPKSLWDLFCGVGGFGLHCATKDIALTGIEIE 276

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     +  V+ + + S +F Q        N     D+       I V+PP
Sbjct: 277 AEAISCAQISANLMGLEKVQFMALDSTDFAQGK------NAADKPDL-------IIVNPP 323

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ +A    +  +    ILY SCNP +L +DL  +   H + ++ LFD FP+T H E 
Sbjct: 324 RRGIGEALCQSLSEFAPRAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHTDHFEV 382

Query: 359 GVLLVR 364
             +LV+
Sbjct: 383 LAMLVK 388


>gi|227550544|ref|ZP_03980593.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
 gi|257897054|ref|ZP_05676707.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com12]
 gi|293378745|ref|ZP_06624903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           PC4.1]
 gi|227180445|gb|EEI61417.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
 gi|257833619|gb|EEV60040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com12]
 gi|292642673|gb|EFF60825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           PC4.1]
          Length = 460

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 27/222 (12%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211
           +A KT + +     DE + V G+  I  QI E +F   P A   ++  +  L   +GI+ 
Sbjct: 252 QAQKTSLVMG----DETIHVWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307

Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   +++ YCG G   L +A+    V  ++    ++  A+ N      +N +    
Sbjct: 308 LDAQPDETIVDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVG 367

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
           ++++       E             ++   I VDPPR+GLD+A +  +  +P   ++YIS
Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYIS 415

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CN  +L RDL  LS    +E L   D FP T   E  V + R
Sbjct: 416 CNVSTLARDLVHLSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457


>gi|119897391|ref|YP_932604.1| 23S rRNA 5-methyluridine methyltransferase [Azoarcus sp. BH72]
 gi|143580584|sp|A1K4G2|RUMA_AZOSB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|119669804|emb|CAL93717.1| putative 23S rRNA (Uracil-5-) methyltransferase [Azoarcus sp. BH72]
          Length = 433

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 16/183 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   +   +   G+ + +L+CG GNFSL +AR    V+ VE ++  V 
Sbjct: 261 FTQVNVHINRLLIRRAMQLLQPAPGERIADLFCGLGNFSLPIARRGATVVGVEGSEALVA 320

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   N ++       S  EF  A      F+  +D          + +DPPR G  
Sbjct: 321 RALENARRNGLD-------SRTEFHAA----NLFDATEDSLAALGPLDKLLIDPPREGAI 369

Query: 306 DA--TVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVL 361
                VG  Q    I+Y+SCNP +L RD ++L     + +    + + FP T H+E   L
Sbjct: 370 AVVKAVGPAQQPARIVYVSCNPATLARDAAVLVHEKGYVLRGAGIANMFPQTSHVESIAL 429

Query: 362 LVR 364
             R
Sbjct: 430 FER 432


>gi|24372567|ref|NP_716609.1| 23S rRNA methyluridine methyltransferase [Shewanella oneidensis
           MR-1]
 gi|24346584|gb|AAN54054.1|AE015542_10 RNA methyltransferase, TrmA family [Shewanella oneidensis MR-1]
          Length = 382

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV    +     L +L+CG G F L  A     +  +EI 
Sbjct: 211 KSFFQTNPHVAAKLYQTAREWV---GEFAPKSLWDLFCGVGGFGLHCASKDIPLTGIEIE 267

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     ++NV+ + + S +F +              D  + +   I V+PP
Sbjct: 268 AEAIACAKMSAQMMGLDNVQFMALDSTDFAKG-------------DAAATKPDLIIVNPP 314

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ ++    +  +    ILY SCNP +L +DL +    + + R+ LFD FP++ H E 
Sbjct: 315 RRGIGESLCDALSEFAPRAILYSSCNPKTLAKDL-VHIRGYQLTRVQLFDLFPHSDHFEV 373

Query: 359 GVLLVR 364
             +LV+
Sbjct: 374 LAMLVK 379


>gi|24379246|ref|NP_721201.1| putative RNA methyltransferase [Streptococcus mutans UA159]
 gi|50401575|sp|Q8DUV4|Y788_STRMU RecName: Full=Uncharacterized RNA methyltransferase SMU_788
 gi|24377161|gb|AAN58507.1|AE014920_5 putative RNA methyltransferase [Streptococcus mutans UA159]
          Length = 451

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  A  N A N++ NV  V  S+++   +
Sbjct: 308 VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYVADSAEKAMAS 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +               +   I VDPPR GL ++ +    A     I YISC P ++ R
Sbjct: 368 WSK------------RGIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + + ++   D FP T H+EC  LLV+
Sbjct: 416 DVKLYEELGYKLVKVQPVDLFPQTHHVECVALLVK 450


>gi|304389387|ref|ZP_07371351.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327376|gb|EFL94610.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 504

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 18/206 (8%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
           V E + V   T  YR    SF Q +      +   +  A   I+G +  ELY G+G FSL
Sbjct: 216 VRETVHVDDLTFTYRIFSGSFWQTDRRAPAILAAALRDALGQIEGFEAWELYSGSGLFSL 275

Query: 226 VLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNR 281
            LA+      R+  VE   P+ ++A YN+A    + V++ R + S +   ++      + 
Sbjct: 276 FLAQGLGAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRRGNVSPQLLSSLPMGEMVS- 334

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHILYI-SCNPDSLCRDLSIL-STT 338
                    +   +  DPPRSGL  A T  +   +P ++ + SC+P S  RDL  +    
Sbjct: 335 ---------QGTLVVADPPRSGLGKAVTRAICAQHPDLVALFSCDPVSCARDLETMRQLG 385

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + ++   +FD FPYT H+E   LL +
Sbjct: 386 YRVKTWRVFDLFPYTSHVETVALLSK 411


>gi|189439124|ref|YP_001954205.1| SAM-dependent methyltransferase [Bifidobacterium longum DJO10A]
 gi|189427559|gb|ACD97707.1| SAM-dependent methyltransferase [Bifidobacterium longum DJO10A]
          Length = 422

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287

Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 335 RTLDHVPAHLAKPDVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E  VL  R
Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVVLFTR 422


>gi|143811455|sp|Q8EI67|RUMB_SHEON RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
          Length = 386

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV    +     L +L+CG G F L  A     +  +EI 
Sbjct: 215 KSFFQTNPHVAAKLYQTAREWV---GEFAPKSLWDLFCGVGGFGLHCASKDIPLTGIEIE 271

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     ++NV+ + + S +F +              D  + +   I V+PP
Sbjct: 272 AEAIACAKMSAQMMGLDNVQFMALDSTDFAKG-------------DAAATKPDLIIVNPP 318

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ ++    +  +    ILY SCNP +L +DL +    + + R+ LFD FP++ H E 
Sbjct: 319 RRGIGESLCDALSEFAPRAILYSSCNPKTLAKDL-VHIRGYQLTRVQLFDLFPHSDHFEV 377

Query: 359 GVLLVR 364
             +LV+
Sbjct: 378 LAMLVK 383


>gi|303231827|ref|ZP_07318541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513505|gb|EFL55533.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 487

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 21/158 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           +++ YCG G  SL LA     V+ +EI +P++  AR N   N  +N + IV  ++ E  +
Sbjct: 340 VIDAYCGTGTISLFLAHKAKHVIGIEIVEPAIINARENARNNGYDNTEFIVADAAVEMPK 399

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDS 327
             +                R   I  DP R+G  +    +  GM      I+Y+SCNP +
Sbjct: 400 LYKA-------------GVRPDVIVFDPIRAGCKEEVLTSAAGMEPK--RIVYVSCNPAT 444

Query: 328 LCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           + RD+ IL+   + ++ +   D FP T H+E   LL R
Sbjct: 445 MARDIEILTHYGYELKEVQPVDMFPMTAHVEAVALLTR 482


>gi|257898994|ref|ZP_05678647.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com15]
 gi|257836906|gb|EEV61980.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com15]
          Length = 460

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 27/222 (12%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211
           +A KT + +     DE + V G+  I  QI E +F   P A   ++  +  L   +GI+ 
Sbjct: 252 QAQKTSLVMG----DETIHVWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307

Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   +++ YCG G   L +A+    V  ++    ++  A+ N      +N +    
Sbjct: 308 LDAQPDETIVDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVG 367

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
           ++++       E             ++   I VDPPR+GLD+A +  +  +P   ++YIS
Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYIS 415

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CN  +L RDL  LS    +E L   D FP T   E  V + R
Sbjct: 416 CNVSTLARDLVHLSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457


>gi|168216552|ref|ZP_02642177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens NCTC 8239]
 gi|182381468|gb|EDT78947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens NCTC 8239]
          Length = 455

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 17/158 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ + YCG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+    
Sbjct: 311 EVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L 
Sbjct: 369 ----------IPDLINKGVKADVVVVDPPRKGCDKKLLDSITNIDAKKIVYVSCDPSTLG 418

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +L      T+E +   D FP T H+E    L++K
Sbjct: 419 RDLQVLEENGYKTLE-VQPVDMFPNTSHVENVAKLIKK 455


>gi|297835104|ref|XP_002885434.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331274|gb|EFH61693.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 559

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 87/214 (40%), Gaps = 32/214 (14%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           Y  + +T   R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG G
Sbjct: 351 YGKDTITEVLRGLTFQISANSFFQTNTH-QAEVLYKLIEESAGLKGDGSEVVLDLFCGTG 409

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LAR    +   E+   ++  A  N   N + N   ++    +  +        N 
Sbjct: 410 TIGLTLARRAKHIYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFG-----NN 464

Query: 282 LKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339
               DI       +  DP R G  +      +    P I+Y+SCNP +  RDL  L   H
Sbjct: 465 FPKPDI-------VISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYL--CH 515

Query: 340 TIERLAL-----------FDQFPYTRHMECGVLL 362
            +E   +            D FP+T H+EC   L
Sbjct: 516 GVEEKNIKGCYKLMSVQPVDMFPHTPHIECVCFL 549


>gi|257888569|ref|ZP_05668222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,141,733]
 gi|257824623|gb|EEV51555.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,141,733]
          Length = 460

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 27/222 (12%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-ENSFT-QPNAGINVHMLEWVLAATKGIQG 211
           +A KT + +     DE + V G+  I  QI E +F   P A   ++  +  L   +GI+ 
Sbjct: 252 QAQKTSLVMG----DETIHVWGKEAIEEQINEVTFDLSPRAFFQLNPQQTELLYGEGIKA 307

Query: 212 -------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   +++ YCG G   L +A+    V  ++    ++  A+ N      +N +    
Sbjct: 308 LGAQPDETIVDAYCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVG 367

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
           ++++       E             ++   I VDPPR+GLD+A +  +  +P   ++YIS
Sbjct: 368 TAEQVLPKWLNE------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYIS 415

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CN  +L RDL  LS    +E L   D FP T   E  V + R
Sbjct: 416 CNVSTLARDLVHLSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457


>gi|197284573|ref|YP_002150445.1| 23S rRNA methyluridine methyltransferase [Proteus mirabilis HI4320]
 gi|194682060|emb|CAR41582.1| putative 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis
           HI4320]
          Length = 377

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 18/157 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L +L+CG+G F L  A+    +  +EI+  ++E AR +     + +V+   + S  F  A
Sbjct: 237 LWDLFCGSGGFGLHCAQKNTELTGIEISPEAIECARLSANELGLEHVEFQALDSTGFALA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                E                + V+PPR G+ +     + +     ILY SCN  ++ +
Sbjct: 297 KESVPEL---------------VLVNPPRRGIGETLCDYLNSMKPRFILYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           D+  LS  + I+R+ LFD FP+T H E   LLV + S
Sbjct: 342 DIQQLS-HYRIDRVQLFDMFPHTAHYEVLTLLVLQQS 377


>gi|291532749|emb|CBL05862.1| 23S rRNA m(5)U-1939 methyltransferase [Megamonas hypermegale
           ART12/1]
          Length = 373

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+   +V  +EI   ++  A  N   N++ N + +   + +    
Sbjct: 207 VIDGYCGTGTISLFLAQKAKKVYGMEIVPEAIRDAIANARDNNIRNAEFLTGDAAKLMPQ 266

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           + R+              R   I  DPPR+G     +    A     I+Y+SCNP SL R
Sbjct: 267 LYRK------------GLRPDVIVTDPPRAGCAPEVLKTFAAMRPKRIVYVSCNPASLAR 314

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ IL    +    +   D FP T H+E   LLV+
Sbjct: 315 DIGILDELGYKATEIQPVDMFPQTGHVESVCLLVK 349


>gi|146294142|ref|YP_001184566.1| 23S rRNA methyluridine methyltransferase [Shewanella putrefaciens
           CN-32]
 gi|167012647|sp|A4Y9Y4|RUMB_SHEPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|145565832|gb|ABP76767.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella
           putrefaciens CN-32]
          Length = 389

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV    +     L +L+CG G F L  A     +  +EI 
Sbjct: 220 KSFFQTNPQVAAQLYQTAREWV---AEFAPKSLWDLFCGVGGFGLHCATKDIALTGIEIE 276

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     +  V+ + + S +F Q        N     D+       I V+PP
Sbjct: 277 AEAISCAQISANLMGLEKVQFMALDSTDFAQGK------NAADKPDL-------IIVNPP 323

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ +A    +  +    ILY SCNP +L +DL  +   H + ++ LFD FP+T H E 
Sbjct: 324 RRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHTDHFEV 382

Query: 359 GVLLVR 364
             +LV+
Sbjct: 383 LAMLVK 388


>gi|303229651|ref|ZP_07316439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515776|gb|EFL57730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 576

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 20/205 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223
           Y D  +T   + L +    +SF Q N      + +  LA    ++GD  +++ YCG G  
Sbjct: 292 YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYAD-LKGDEIVIDAYCGTGTI 350

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREFNRL 282
           SL LA     V+ +EI +P++  AR N   N  +N + IV  ++ E  +  +        
Sbjct: 351 SLFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAAVEMPKLYKA------- 403

Query: 283 KDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILS-TTH 339
                   R   I  DP R+G  ++         P+ I+Y+SCNP ++ RD+ IL+   +
Sbjct: 404 ------GVRPDVIVFDPIRAGCKEEVLTSAASMEPNRIVYVSCNPATMARDIEILTHYGY 457

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            ++ +   D FP T H+E   LL +
Sbjct: 458 ELKEVQPVDMFPMTAHVETVALLSK 482


>gi|156743278|ref|YP_001433407.1| (Uracil-5)-methyltransferase [Roseiflexus castenholzii DSM 13941]
 gi|156234606|gb|ABU59389.1| (Uracil-5)-methyltransferase [Roseiflexus castenholzii DSM 13941]
          Length = 405

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 18/177 (10%)

Query: 185 NSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           N+F Q N  + + +LE V    A  G  G + +LY G G  +L +ARH DR++ +E +  
Sbjct: 235 NTFFQNNVWLLMPLLEAVRDAVAACGHAGAIADLYSGVGAIALHIARHADRIVCIESSGE 294

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV  AR N       ++ ++     +   A+R +            +  F  +  DPPR+
Sbjct: 295 SVRLARENSVRAGFEHIAVIE---ADVADALRAQT-----------TGAFDVVVADPPRT 340

Query: 303 GLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           GL        +      I+Y+SCNP +   D+  L + + +  L  +D FP T H+E
Sbjct: 341 GLGPEVCRELLRLRPRRIVYVSCNPLTQRDDIRALQSGYRLVLLQGYDMFPQTPHLE 397


>gi|24215676|ref|NP_713157.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|50401762|sp|Q8F201|Y2977_LEPIN RecName: Full=Uncharacterized RNA methyltransferase LA_2977
 gi|24196843|gb|AAN50175.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 454

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 11/195 (5%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           V G+   +R   +SF QPN      +L+++          L++L+CG+G FS + A  F 
Sbjct: 265 VCGKE--FRVPFDSFFQPNPEGFQPILDFIEKEIPDSFDHLVDLFCGSGFFSRIFAHKFL 322

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           ++  ++  + S+E AR  ++ +        ++ S      +  +   ++LK +   S   
Sbjct: 323 KITGIDSIESSLEIARKQMSLD------FPKIDSSYLKVDLFSKNSSSKLK-VLFSSSDK 375

Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
             +  DPPR+GL +  +  ++     +  Y+SCNP S   DL  L     I+++ + D +
Sbjct: 376 DVLIADPPRAGLGEFVLDALKDSKVSYFFYVSCNPTSQKSDLWKLKDFFQIQKILITDPY 435

Query: 351 PYTRHMECGVLLVRK 365
           P T H+E    L RK
Sbjct: 436 PQTPHLESVAFLKRK 450


>gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
           ATCC 700633]
 gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
           ATCC 700633]
          Length = 455

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 91/215 (42%), Gaps = 22/215 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
            ++ K+    D   E L     T+  R    SF Q N  I   +L        G+ GD  
Sbjct: 256 GSQKKVLFGEDAFQEVLMEFTFTISSR----SFFQVNT-IQTEVLYHEAIQAAGLTGDET 310

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL  A+   +V A+EI   +++ A+ N   N ++NV           + 
Sbjct: 311 VVDAYCGIGTMSLAFAKRAKKVYAMEIVPDAIQMAKENARINQIDNVTF---------EV 361

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
              E+      D  +       I VDPPR GLD A +   +      ++Y+SCNP +L R
Sbjct: 362 GAAEKVMPTWVDSGLQP---DVIVVDPPRKGLDGAFIDAAVKTKARKLVYVSCNPATLAR 418

Query: 331 DLSILSTTHTIERLA-LFDQFPYTRHMECGVLLVR 364
           DL++          A   D FP T  +E   +L R
Sbjct: 419 DLALFQEKGYQALYAQPVDMFPMTTAIETVAVLER 453


>gi|300811827|ref|ZP_07092297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497197|gb|EFK32249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 460

 Score = 69.3 bits (168), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V  A++N+  NHV N + ++ S       
Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVEINHVRNAEYLQGSV------ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
              E+   RLK+          + VDPPR+GL  + +  +++  P   +YISCNP +L +
Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           DL +L   + +  +   D  P T   EC
Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452


>gi|238757958|ref|ZP_04619140.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia aldovae ATCC
           35236]
 gi|238703943|gb|EEP96478.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia aldovae ATCC
           35236]
          Length = 374

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 22/157 (14%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +L+CG G F L  A    ++  +EI+  ++  AR +     + NV    + S  F 
Sbjct: 235 SSMWDLFCGVGGFGLHCATAQTQLTGIEISAQAIACARQSAVQLGLQNVSFAALDSTRFA 294

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPD 326
            +  +  +                + V+PPR G    L D    M   Y  ILY SCN +
Sbjct: 295 TSTAQVPQL---------------VLVNPPRRGIGTELCDYLSNMAPEY--ILYSSCNAE 337

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           ++ +D+S+L   + IER+ LFD FP+T H E   LL 
Sbjct: 338 TMAKDISLL-VDYRIERVQLFDMFPHTAHYEVLSLLT 373


>gi|257063252|ref|YP_003142924.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
           heliotrinireducens DSM 20476]
 gi|256790905|gb|ACV21575.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
           heliotrinireducens DSM 20476]
          Length = 401

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 21/161 (13%)

Query: 213 LLELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +++ YCG G   LV  R  +      +++ VE    +V  AR N   N ++N + V   +
Sbjct: 250 VMDAYCGTGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFVAADA 309

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPH-ILYISCN 324
             +   MR + E  R  D+         +F+DPPR+G   D         P  I+YISCN
Sbjct: 310 GAY---MREQAEQGRSVDV---------LFMDPPRAGSTPDFLKAACSISPKRIVYISCN 357

Query: 325 PDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           P +  RD   ++   + I+ L   D FP+T H+EC + + R
Sbjct: 358 PTTQARDAKYLIEHGYRIDVLQPVDMFPHTDHVECVISMSR 398


>gi|313123270|ref|YP_004033529.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279833|gb|ADQ60552.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 460

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V  A++N+  NHV N + ++ S       
Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVEINHVRNAEYLQGSV------ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
              E+   RLK+          + VDPPR+GL  + +  +++  P   +YISCNP +L +
Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           DL +L   + +  +   D  P T   EC
Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452


>gi|295105028|emb|CBL02572.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 457

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   L +A     ++ VEI   ++E+A+ N A          R    +  QA
Sbjct: 310 LLDLYCGMGTIGLSMAGQCRELIGVEIVPEAIESAKANAARMGEAVAAKSRFFCADAGQA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
             +        DI         + +DPPR G D+AT+  V   A   ++Y+SCNP +  R
Sbjct: 370 ATQLAAEGLHPDI---------VMLDPPRKGCDEATLSAVVRMAPRRVVYVSCNPATAAR 420

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357
           D + L    +  E++   D FP T+H E
Sbjct: 421 DAAWLEQNGYHAEKVQPVDLFPRTKHCE 448


>gi|256070796|ref|XP_002571728.1| rna m5u methyltransferase [Schistosoma mansoni]
 gi|238656875|emb|CAZ27958.1| rna m5u methyltransferase, putative [Schistosoma mansoni]
          Length = 607

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 22/168 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL++ CG G  +L L++HFDRV+ +++   ++E A+ N   N + NV+           A
Sbjct: 449 LLDVCCGTGTIALCLSKHFDRVIGIDMCNSAIEDAKSNAKLNDIQNVEFF---------A 499

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPD--- 326
            + E       D  +  Y   ++ VDPPR+GL  + + +++       I+YISCN +   
Sbjct: 500 GKAENMLRNTID-SLPEYCDLSVIVDPPRAGLHHSVIQLLRNCKQIQRIIYISCNIEYAI 558

Query: 327 ----SLCRDLS-ILSTTHTIERLA-LFDQFPYTRHMECGVLLVRKPSG 368
               +  R  S   +    +  +A   D FP TRH E  +LL R PS 
Sbjct: 559 ENFLNFARPCSKKFTGIPFVPTMAEAVDLFPQTRHTEVILLLERIPSN 606


>gi|322517118|ref|ZP_08070002.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
           ATCC 49124]
 gi|322124268|gb|EFX95779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
           ATCC 49124]
          Length = 452

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +VE A+ N   N + N   V  S++    A
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAECNGITNAHYVADSAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M +  +     D+         I VDPPR GL ++ +   V   P  I Y+SCNP ++ R
Sbjct: 365 MAKWSKDGIKPDV---------IIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMAR 415

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+       + ++++   D FP T H+E   LLVR
Sbjct: 416 DIKRYQELGYELKKVQPVDLFPQTHHVEVVSLLVR 450


>gi|45656969|ref|YP_001055.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|51316690|sp|Q72TD6|Y1085_LEPIC RecName: Full=Uncharacterized RNA methyltransferase LIC_11085
 gi|45600206|gb|AAS69692.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 454

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 11/195 (5%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           V G+   +R   +SF QPN      +L+++          L++L+CG+G FS + A  F 
Sbjct: 265 VCGKE--FRVPFDSFFQPNPEGFQPILDFIEKEIPDSFDHLVDLFCGSGFFSRIFAHKFL 322

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           ++  ++  + S+E AR  ++ +        ++ S      +  +   ++LK +   S   
Sbjct: 323 KITGIDSIESSLEIARKQMSLD------FPKIDSSYLKVDLFSKHSSSKLK-VLFSSSDK 375

Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
             +  DPPR+GL +  +  ++     +  Y+SCNP S   DL  L     I+++ + D +
Sbjct: 376 DVLIADPPRAGLGEFVLDALKDSKVSYFFYVSCNPTSQKSDLWKLKDFFQIQKILITDPY 435

Query: 351 PYTRHMECGVLLVRK 365
           P T H+E    L RK
Sbjct: 436 PQTPHLESVAFLKRK 450


>gi|325684545|gb|EGD26708.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 460

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V  A++N+  NHV N + ++ S       
Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSV------ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
              E+   RLK+          + VDPPR+GL  + +  +++  P   +YISCNP +L +
Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           DL +L   + +  +   D  P T   EC
Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452


>gi|322412063|gb|EFY02971.1| Putative RNA methyltransferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 452

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +     D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 280 SFYQVNTVMAEKLYQTAIAFSDLSDDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIETAV 339

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N A N + NV  V  +++       +E              +   I VDPPR GL
Sbjct: 340 KDAQQNAARNGITNVHFVADTAENAMATWAKE------------GIKPSVILVDPPRKGL 387

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC  L
Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQPVDLFPQTHHVECVSL 447

Query: 362 LVRK 365
           L ++
Sbjct: 448 LEKR 451


>gi|160876725|ref|YP_001556041.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS195]
 gi|217974580|ref|YP_002359331.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS223]
 gi|189045737|sp|A9L1I5|RUMB_SHEB9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|254766929|sp|B8E5Q5|RUMB_SHEB2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|160862247|gb|ABX50781.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS195]
 gi|217499715|gb|ACK47908.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS223]
 gi|315268925|gb|ADT95778.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS678]
          Length = 390

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV   +      L +L+CG G F L  A     +  +EI 
Sbjct: 221 KSFFQTNPQVAAQLYQTAREWVAEFSPR---SLWDLFCGVGGFGLHCASKDITLTGIEIE 277

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     + NV+ + + S +F +                 + +   I V+PP
Sbjct: 278 AEAIACAQMSAQMMGLENVQFMALDSTDFAKGKSA-------------ADKPDLIIVNPP 324

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ +A    +  +    ILY SCNP +L +DL  +   H + ++ LFD FP+T H E 
Sbjct: 325 RRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHTDHFEV 383

Query: 359 GVLLVR 364
             +LV+
Sbjct: 384 LAMLVK 389


>gi|19113979|ref|NP_593067.1| tRNA (m5U54) methyltransferase Trm2 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1351598|sp|Q09833|YAD7_SCHPO RecName: Full=Uncharacterized RNA methyltransferase C4G8.07c
 gi|1022352|emb|CAA91208.1| tRNA (m5U54) methyltransferase Trm2 (predicted)
           [Schizosaccharomyces pombe]
          Length = 527

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 22/160 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
            ++ YCG+G FS+  ++ F  V+ VEI+  SV  A  N   N+V+N   IV  + K F+ 
Sbjct: 379 FVDAYCGSGLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQAEKIFSS 438

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLC 329
                 E                + +DPPR G D + +  +  Y P+ I+YISCN  +  
Sbjct: 439 IETPPNE--------------TAMVIDPPRKGCDQSFLNQLLEYSPYRIVYISCNVHTQA 484

Query: 330 RDLSIL-----STTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD+  L       ++ I+ +  FD FP + H+E  + L +
Sbjct: 485 RDVGFLLSQEKGRSYKIDEIRGFDLFPQSHHVESILTLTK 524


>gi|237735640|ref|ZP_04566121.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381385|gb|EEO31476.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 383

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 15/158 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  +++ YCG G   +++A     V  VE+ K +V+ A  N   N + N+K +   +  F
Sbjct: 237 QERIIDAYCGIGTIGMIVANRTKEVTGVELNKDAVKDAINNAKMNKIENIKFINDDASAF 296

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
              + ++++            +   + +DPPRSG     +  V+      ++YISC+P +
Sbjct: 297 MIKLAKQKQ------------KVDCVIMDPPRSGSTQEFMDAVKILNPKQVVYISCDPST 344

Query: 328 LCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             RD+   +   +  E +   D FP+T H+E  VLL +
Sbjct: 345 QVRDIKYFAKIGYRGEVMYPVDMFPHTSHVETIVLLSK 382


>gi|159483505|ref|XP_001699801.1| tRNA (uracil-5)-methyltransferase [Chlamydomonas reinhardtii]
 gi|158281743|gb|EDP07497.1| tRNA (uracil-5)-methyltransferase [Chlamydomonas reinhardtii]
          Length = 206

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 32/183 (17%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +W  A  K +   LL++ CG G   L+LA    +V+ V+  + +VE AR N A N + N 
Sbjct: 38  DWAAARPKTL---LLDICCGTGTIGLMLASKVAKVVGVDNVESAVEDARVNAALNGIGNA 94

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHS----YRFKTIFVDPPRSGLDDATVGMVQAY 315
           + V   +++  Q++           +D+H+    Y       DPPR+GL  + +  +   
Sbjct: 95  EFVAGKAEDALQSI-----------LDLHAANDAYEDVVAVCDPPRAGLHKSVLRALLDC 143

Query: 316 PHI---LYISCNPDSLCRDLSILSTTHTIER-----------LALFDQFPYTRHMECGVL 361
             I   +++SCNPD+L  ++++L       R               D FP+T H+E  +L
Sbjct: 144 AKIRRLVFVSCNPDNLISNVALLCVPPPARRANSPTPFLAPSATALDLFPHTAHVETVML 203

Query: 362 LVR 364
           L R
Sbjct: 204 LER 206


>gi|308272258|emb|CBX28864.1| Uncharacterized RNA methyltransferase CT0009 [uncultured
           Desulfobacterium sp.]
          Length = 470

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++LY G G   + L+     +  +EI + SV  A+ N   N ++N   +    K     
Sbjct: 329 VIDLYSGTGTIPIFLSEDASEISGIEICESSVSDAKKNCIINGISNCTFITGDIK----- 383

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                  N    ID    +   I +DPPR G+    V  V   +   I+Y+SCNP +L R
Sbjct: 384 -------NSFSKID---KKPDVIIIDPPRVGMHKDVVKQVVDISAERIVYVSCNPATLAR 433

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L   + +  +   D FP+T H+E    L +K
Sbjct: 434 DLLVLKDYYDVMEVQPVDMFPHTFHIESVARLEKK 468


>gi|169350959|ref|ZP_02867897.1| hypothetical protein CLOSPI_01736 [Clostridium spiroforme DSM 1552]
 gi|169292021|gb|EDS74154.1| hypothetical protein CLOSPI_01736 [Clostridium spiroforme DSM 1552]
          Length = 449

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 159/366 (43%), Gaps = 51/366 (13%)

Query: 19  DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP 78
           D L ++   F   N  +   +P +YR + +  I   G+ L    + Q++ E +  D    
Sbjct: 100 DCLERIGNCFVEVNDCLMMEDPWYYRNKVQMPIGVKGNRLVTGFYKQKSNEIIPCDECFI 159

Query: 79  GSLLINALMIEMMATIRLEPLL-RAKLFQIDYLTSQ-------------SDQAIVTLIYH 124
            + L N +      T R++ L+ + K++  D L+ Q             S++ ++ LI +
Sbjct: 160 QNKLSNQI------TKRVKELMEKYKIYPYDKLSHQGNIKHILTKHGYHSNEIMLVLISY 213

Query: 125 --------RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
                   +L+ +  +E ++ ++  +    ++I  +   +K  I     ++ + L +  R
Sbjct: 214 LDKINNVDKLVAEITKEFSM-IKTVIQNINHRIDNVILGDKEIILFGDGFIYDNL-LDNR 271

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
              Y+    SF Q N  I V  L         +  D  +L+ YCG G  +L LA++  +V
Sbjct: 272 ---YKISLKSFYQVNP-IQVEKLYQKAIEFAKLSNDDVVLDAYCGIGTIALSLAKYVKKV 327

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             VEI   ++  AR N   N + NV+     + ++            L + +IH      
Sbjct: 328 YGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKYMI---------ELVNNNIH---LDV 375

Query: 295 IFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           +FVDPPR G     +  ++QA P  I+YISC+  +  RD+  L    + ++     D FP
Sbjct: 376 VFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEFNYQVDMCQPVDMFP 435

Query: 352 YTRHME 357
           +T H+E
Sbjct: 436 HTTHIE 441


>gi|332071886|gb|EGI82374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA17545]
          Length = 374

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 224 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 283

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 284 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 331

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL  L   + +  +   D FP+T   E  V L+
Sbjct: 332 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLI 364


>gi|294791683|ref|ZP_06756831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp.
           6_1_27]
 gi|294456913|gb|EFG25275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp.
           6_1_27]
          Length = 496

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 156/388 (40%), Gaps = 60/388 (15%)

Query: 10  YEQQLAEKVDRLRQMM--LAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL+ K  +++ ++  +A Q P+L    +    P  YR + +  +             
Sbjct: 131 YEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRNKMQMPVG------------ 178

Query: 65  QQTKERMRIDYFMPGSLLI-----NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
             TK  +++ ++  GS  I       +  E   +I       AK F I+     + + ++
Sbjct: 179 -GTKGDIQMGFYAMGSHDIVQGTNCPIQSEGNNSIAQACYQIAKEFDIEPYDEHTGKGVL 237

Query: 120 TLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------------ANKTKICLDRD- 165
             +  R+    W    +   + L H  K+  +LI R              +T + L    
Sbjct: 238 RHVIGRIGQSGWMIILVTATEHLPHQEKWVEKLIERVPQVETIVHNVNGKRTNVILGPKN 297

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT--KGIQGDLLELYCGN 220
              Y    +T   + L +    +SF Q N      + +  LA    KG +  +++ YCG 
Sbjct: 298 SLLYGAGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTE-IVIDAYCGT 356

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREF 279
           G  SL LA     V+ +EI +P++  AR N   N  +N + IV  ++ E  +  +     
Sbjct: 357 GTISLFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAAVEMPKLYKA---- 412

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSILS- 336
                      R   I  DP R+G  +   T         I+Y+SCNP ++ RD+ IL+ 
Sbjct: 413 ---------GVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTH 463

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +   D FP T H+E   LL R
Sbjct: 464 YGYELKEVQPVDMFPMTAHVEAVALLTR 491


>gi|297539105|ref|YP_003674874.1| TrmA family RNA methyltransferase [Methylotenera sp. 301]
 gi|297258452|gb|ADI30297.1| RNA methyltransferase, TrmA family [Methylotenera sp. 301]
          Length = 457

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 17/185 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L Y    N FTQ N  IN  ML   +      Q + + + +CG GNF+L +A    +VL 
Sbjct: 277 LTYPFKPNEFTQVNPHINRVMLRRAMQLLAPQQNERIADFFCGIGNFTLPIAHSGAQVLG 336

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E     V+ A  + A N++ +VK       + T++   E               F    
Sbjct: 337 LEGLANLVDRANESAALNNIKHVKFGVADLFKMTESSLAELG------------HFDKWL 384

Query: 297 VDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPY 352
           VDPPR G  +    +  +  P  I+Y+SCNP +L RD  +L     +T+    + + FP+
Sbjct: 385 VDPPRDGAFELVKAITPETAPKLIVYVSCNPATLARDAGVLVNEKGYTLAAAGVINMFPH 444

Query: 353 TRHME 357
           T H+E
Sbjct: 445 TAHVE 449


>gi|270292705|ref|ZP_06198916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M143]
 gi|270278684|gb|EFA24530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M143]
          Length = 455

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 15/159 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N A N++ N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAALNNITNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           D+ +     + ++++   D FP T H+E  VL+ +   G
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVVLMSKANPG 454


>gi|213691821|ref|YP_002322407.1| (Uracil-5)-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523282|gb|ACJ52029.1| (Uracil-5)-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457915|dbj|BAJ68536.1| putative methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 422

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 228 EQVTINGTTFDYQVDVNGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287

Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD +IL  
Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTAILIG 394

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   L  R
Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422


>gi|118444301|ref|YP_878485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
 gi|118134757|gb|ABK61801.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
          Length = 450

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 31/236 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L   LH     +  + +A+  ++   RDY+ E +      L ++    SF Q     N 
Sbjct: 238 ELTGILHTINDSLSDVVQADSMEVLFGRDYIMEEVL----GLKFKISPFSFFQ----TNT 289

Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              E + +  +G  GD     + +LYCG G    + A + ++V+ +E+ + + +AA  N 
Sbjct: 290 KGAEALYSIVRGFMGDAKSKVVFDLYCGTGTIGQIAAHNAEKVIGIELIEEAAKAANENA 349

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N + N + +     +             +KDI +       I +DPPR G+    +  
Sbjct: 350 KLNGLTNCEFLAGDVAKV------------IKDIKVKP---DIIILDPPRPGVHPDALKY 394

Query: 312 VQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           V  +    I+Y+SCNP +L  DL  L    +  E++ + D FP+T H+E  V L +
Sbjct: 395 VTKFNAKDIIYVSCNPKTLVEDLKFLIKEGYKAEKVKVKDMFPHTPHVETVVRLTK 450


>gi|322391561|ref|ZP_08065030.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321145644|gb|EFX41036.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 455

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 15/158 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKENAKRMGYTNTHYEVGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTIVKYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV-RKPS 367
           DL  L   + +  +   D FP+T   E  V L  RKP+
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLTRRKPA 453


>gi|319947529|ref|ZP_08021760.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
           ATCC 700641]
 gi|319746308|gb|EFV98570.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
           ATCC 700641]
          Length = 450

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   ++E A+YN       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFADKVKSVRGMDIIPEAIEDAKYNAKQMGFENTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             YR   + VDPPR+GL    +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYKE------------GYRADAVIVDPPRTGLGVQLIDTLLRYAPQKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + +  +   D FP+T   E  V LV+K
Sbjct: 416 DLVDLTKVYDVVYIQSVDMFPHTARTEAVVKLVKK 450


>gi|74316988|ref|YP_314728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thiobacillus
           denitrificans ATCC 25259]
 gi|91207814|sp|Q3SK67|RUMA_THIDA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|74056483|gb|AAZ96923.1| 23S rRNA methyltransferase/RumA [Thiobacillus denitrificans ATCC
           25259]
          Length = 432

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 19/195 (9%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G  + +R  E  FTQ N+ IN  ++   L       G+ + +L+CG GNF+L +A     
Sbjct: 252 GLVMPFRPTE--FTQVNSAINRALVSRALRLLDPRPGERIADLFCGLGNFTLPIAHRGAD 309

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL +E +   V  AR N   N + + +    +  E T       +F  L   D       
Sbjct: 310 VLGIEGSTELVARARENALRNALPHARFEVDNLFEMTP-----EKFAALGPFD------- 357

Query: 294 TIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
            + +DPPRSG  +    + +A     I+Y+SC+P +L RD  +L     + +E   + + 
Sbjct: 358 KLLIDPPRSGAIEVVKSLPEAGAPRRIVYVSCDPATLARDAEVLVHVKGYRLEAAGVANM 417

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E   L  R
Sbjct: 418 FPHTAHVESIALFER 432


>gi|331265805|ref|YP_004325435.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
 gi|326682477|emb|CBZ00094.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
          Length = 453

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFATKVKSLRGMDIIPEAIEDAKRNAKKMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLD   +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYQE------------GYRANALIVDPPRTGLDGKLLDTILTYVPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + ++ +   D FP+T   E  V LV+K
Sbjct: 416 DLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 450


>gi|315222549|ref|ZP_07864438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus F0211]
 gi|315188235|gb|EFU21961.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus F0211]
          Length = 453

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 15/158 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N ++N   V  S++     
Sbjct: 308 VVDAYSGIGTIGLSVAKHVKEVYGVEVIPQAVENSKKNAELNSISNAHYVCDSAE----- 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                  N +K       +   I VDPPR GL ++ +   V   P  I+YISCN  ++ R
Sbjct: 363 -------NAIKKWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIIYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           D+ +     + + ++   D FP T H+EC  L+ R  S
Sbjct: 416 DIKLYQELGYKLTKVQPVDLFPMTHHVECIALIQRVKS 453


>gi|167757279|ref|ZP_02429406.1| hypothetical protein CLORAM_02829 [Clostridium ramosum DSM 1402]
 gi|167703454|gb|EDS18033.1| hypothetical protein CLORAM_02829 [Clostridium ramosum DSM 1402]
          Length = 378

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 15/158 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  +++ YCG G   +++A     V  VE+ K +V+ A  N   N + N+K +   +  F
Sbjct: 232 QERIIDAYCGIGTIGMIVANRTKEVTGVELNKDAVKDAINNAKMNKIENIKFINDDASAF 291

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
              + ++++            +   + +DPPRSG     +  V+      ++YISC+P +
Sbjct: 292 MIKLAKQKQ------------KVDCVIMDPPRSGSTQEFMDAVKILNPKQVVYISCDPST 339

Query: 328 LCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             RD+   +   +  E +   D FP+T H+E  VLL +
Sbjct: 340 QVRDIKYFAKIGYRGEVMYPVDMFPHTSHVETIVLLSK 377


>gi|325125323|gb|ADY84653.1| RNA methyltransferase family [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 460

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V  A++N+  NHV N + ++ S       
Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSV------ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
              E+   RLK+          + VDPPR+GL  + +  +++  P   +YISCNP +L +
Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           DL +L   + +  +   D  P T   EC
Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452


>gi|269839722|ref|YP_003324414.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791452|gb|ACZ43592.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 397

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 91/189 (48%), Gaps = 23/189 (12%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237
           +R  ++SF Q N      M + V+   + ++G+  +++ Y G G F+++LA    RV+A+
Sbjct: 225 FRISDSSFFQTNTLQAERMAQLVIERCQ-LRGEEVVVDAYAGVGTFAVLLAPRARRVIAI 283

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E +  +V  A  NI    V N++ VR  ++E    M  + E                + +
Sbjct: 284 EESAAAVADAMVNIEG--VPNIEYVRGKTEEVLGEMAEQPE---------------VLIL 326

Query: 298 DPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTR 354
           DPPR G    A   +V   P  ++Y+SC+P SL RDL  +    + +  +   D FP T 
Sbjct: 327 DPPRVGCHPKALQAVVSLAPARVVYVSCDPGSLARDLRKLCDGGYQLVEVTPVDMFPQTH 386

Query: 355 HMECGVLLV 363
           H+EC   LV
Sbjct: 387 HIECVATLV 395


>gi|325696391|gb|EGD38282.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK160]
          Length = 456

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L +K S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452


>gi|312139448|ref|YP_004006784.1| (uracil-5-)-methyltransferase [Rhodococcus equi 103S]
 gi|311888787|emb|CBH48099.1| putative (uracil-5-)-methyltransferase [Rhodococcus equi 103S]
          Length = 422

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 41/196 (20%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232
           G    Y ++   +TQP+AG NV    W             +LY G G F+  LA      
Sbjct: 262 GAAETYAEVVGEWTQPSAGDNV----W-------------DLYGGVGVFAATLADQVGVT 304

Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV +VE +K +V      +A     ++  VR+       A R ER  + L   D+    
Sbjct: 305 GRVDSVEFSKQAVADGGEALA-----DLPQVRL------HAARVERALHDLPTPDV---- 349

Query: 292 FKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
              + +DPPR+G     V  +V A P  I++I C+P S  RD+S+  +  + +E++  FD
Sbjct: 350 ---VVLDPPRTGAGREVVDTIVAAAPQRIVHIGCDPASFARDVSLFRAGGYRLEQVRAFD 406

Query: 349 QFPYTRHMECGVLLVR 364
            FP T H+E   LL R
Sbjct: 407 AFPLTHHVESLALLTR 422


>gi|291165734|gb|EFE27782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Filifactor alocis ATCC
           35896]
          Length = 547

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 22/157 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQ 271
           + +LY G G   ++++    +V+A+E+ + +VE A+ N   N V NV+ +    +KE  +
Sbjct: 315 IFDLYSGTGTIGILVSTIAKKVIAIELIEEAVEMAKENAKMNGVENVEFIAGDVAKEVGK 374

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
             R E+ +               I +DPPRSG+    +G V  +   +I+Y+SCNP    
Sbjct: 375 --REEKPY--------------LIILDPPRSGMHPKAIGDVLNFEAENIIYVSCNPKIFA 418

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
            +L +        ++++ + DQFP T H E   LL +
Sbjct: 419 EELHLFKEKGYQVMDKVGV-DQFPNTNHCETVALLSK 454


>gi|238751797|ref|ZP_04613284.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia rohdei ATCC
           43380]
 gi|238709926|gb|EEQ02157.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia rohdei ATCC
           43380]
          Length = 375

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 18/155 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    ++  +EI+  ++  A+ +     + NV    + S  F  
Sbjct: 236 SMWDLFCGVGGFGLHCADTQTQLTGIEISAEAIMCAQQSAKKLGLKNVTFAALDSTHFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A   E +  +L            + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 296 A---ETQVPQL------------VLVNPPRRGIGAQLCEYLSQMAPEFILYSSCNAETMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +D+++L+  + IER+ LFD FP+T H E   LL++
Sbjct: 341 KDINLLAE-YRIERVQLFDMFPHTSHYEVLTLLIK 374


>gi|116513673|ref|YP_812579.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116092988|gb|ABJ58141.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 460

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 14/148 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V  A++N+  NHV N + ++ S       
Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSV------ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
              E+   RLK+          + VDPPR+GL  + +  +++  P   +YISCNP +L +
Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           DL +L   + +  +   D  P T   EC
Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452


>gi|170106666|ref|XP_001884544.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640455|gb|EDR04720.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 456

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 21/163 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G F++VL+ HFD+V  +E++  S+  A  N   N++   KI         +A
Sbjct: 303 LVDTYCGSGLFAIVLSPHFDKVAGIELSADSIRYATRNAKLNNIPEEKIS-------FRA 355

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCR 330
                 F  + D          + +DPPR G D+  +  + ++    I+Y+SCN  +  R
Sbjct: 356 GNAGEIFATVGDFPADE---SVVLIDPPRKGCDEFFIQQLLSFAPRTIVYVSCNVHTQAR 412

Query: 331 DL-SILSTT--------HTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +IL  T        + +E +  FD FP T H+E   +L R
Sbjct: 413 DVGNILRATEGNEVGKKYVLESVRGFDLFPQTAHVESVAVLRR 455


>gi|295426510|ref|ZP_06819160.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
           DSM 11664]
 gi|295063878|gb|EFG54836.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
           DSM 11664]
          Length = 450

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  +E  + +VE A  N   N + N + V   +++    
Sbjct: 305 VVDAYSGIGTIGLSVAKHVKAVRGMETIREAVEDANANAKLNGIENAQYVTGKAEDVMPR 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
              E              +   IFVDPPR GL    +    A     I+YISCNP +  R
Sbjct: 365 WASE------------GLKTDVIFVDPPRKGLTPEFINAAAATKPKRIVYISCNPATQIR 412

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL +L    +  + ++  D FP T H+E   +L R
Sbjct: 413 DLQLLQEKGYHFDEISPVDMFPQTPHVESVTVLER 447


>gi|295697348|ref|YP_003590586.1| RNA methyltransferase, TrmA family [Bacillus tusciae DSM 2912]
 gi|295412950|gb|ADG07442.1| RNA methyltransferase, TrmA family [Bacillus tusciae DSM 2912]
          Length = 528

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 19/183 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            SF Q N+     M    + A  G+ G   +++ YCG G  SL L+R    V  +E+A+ 
Sbjct: 357 TSFYQVNSQQAERMYRLAVEAA-GLDGSQRVVDAYCGVGTLSLFLSRSAAWVTGIEVARE 415

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V  AR N   N + N +    + +E    +  +R+ +              + +DPPR 
Sbjct: 416 AVADARRNARMNRIGNARFQVGAVEEILPRLVADRQPD-------------VVTLDPPRR 462

Query: 303 GLDDATVG--MVQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECG 359
           G     +   +    P ++Y+SC+P +L RDL IL+   + +  +   D FP T H+E  
Sbjct: 463 GCRREVLEALICSQVPRVVYVSCDPATLARDLRILAGGGYQVRGVWPVDMFPQTGHVESV 522

Query: 360 VLL 362
            LL
Sbjct: 523 ALL 525


>gi|291542511|emb|CBL15621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus bromii
           L2-63]
          Length = 454

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   L +A    +++  EI + +V+ A  N  AN + N + +         A
Sbjct: 311 LLDLYCGTGTIGLTMADSCKQLIGAEIVEDAVKDANENAKANGIENARFI--CGDASAAA 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
            + E+E            +   + +DPPR G  +  V  +       ++Y+SC+P +L R
Sbjct: 369 FQLEKE----------GLKPDCVILDPPRKGCGEELVKTISRMLPSRVVYVSCDPATLAR 418

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL   +   +T + +   D F  T H+E   L+ R
Sbjct: 419 DLKFFTENGYTPKEITPCDMFSGTSHVESVALIER 453


>gi|90961349|ref|YP_535265.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|90820543|gb|ABD99182.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
           UCC118]
          Length = 459

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G   L ++     V  ++I   ++E A+ N   +   N+           + 
Sbjct: 317 LVDAYCGVGTIGLFVSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNI---------HYEV 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330
            + E  F +    D   +    + VDPPR+GLDD  +  +  Y P+  +Y+SCNP +L R
Sbjct: 368 GKAEDLFAKWTKND---FVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +E +   D FP T  +E  V L +K
Sbjct: 425 DLVKLVKIYNVEYIQSVDMFPQTARVEAVVKLSKK 459


>gi|319938868|ref|ZP_08013232.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus 1_2_62CV]
 gi|319811918|gb|EFW08184.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus 1_2_62CV]
          Length = 453

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A   I+  +++ Y G G   L +A+H   V  VE+   +VE ++ N   N ++N   V  
Sbjct: 300 AELSIEDIVVDAYSGIGTIGLSVAKHVKEVYGVEVIPQAVENSKKNAELNGISNAHYVCD 359

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYIS 322
           S++            N +K       +   I VDPPR GL ++ +   V   P  I+YIS
Sbjct: 360 SAE------------NAIKKWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIVYIS 407

Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           CN  ++ RD+ +     + + ++   D FP T H+EC  L+ R  S
Sbjct: 408 CNVATMARDIKLYQELGYKLTKVQPVDLFPMTHHVECIALIQRVKS 453


>gi|42528119|ref|NP_973217.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|51316951|sp|Q73JF6|Y2619_TREDE RecName: Full=Uncharacterized RNA methyltransferase TDE_2619
 gi|41819164|gb|AAS13136.1| RNA methyltransferase, TrmA family, putative [Treponema denticola
           ATCC 35405]
          Length = 404

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 6/206 (2%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           ++  KI    +  D  + +AG+ + +  +   F Q N  +   ++  +    + I   +L
Sbjct: 194 SDGEKIFTQDNAKDCEVRLAGKRIKFNPL--GFFQSNLEMTEKLINTIFEYAE-ISSSVL 250

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + Y G G FSL        +  VE  K ++  A+ N   N  ++  +       F +   
Sbjct: 251 DFYSGVGTFSLFAYDQAKEIHLVEHNKHALAYAQENFLINSSSSGIVREKKENGFPKIFY 310

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332
              +            +F T+FVDPPR G+D   +  +       I YISC+P +  RD 
Sbjct: 311 HALDGKNWAKTKESKLKFDTVFVDPPRIGIDKEALSWLCSSGTRQIFYISCDPVTFARDT 370

Query: 333 -SILSTTHTIERLALFDQFPYTRHME 357
            S+L + + +E+  LFD +P T H+E
Sbjct: 371 ASLLVSGYKLEKHFLFDFYPQTHHIE 396


>gi|293363614|ref|ZP_06610370.1| TRAM domain protein [Mycoplasma alligatoris A21JP2]
 gi|292552963|gb|EFF41717.1| TRAM domain protein [Mycoplasma alligatoris A21JP2]
          Length = 464

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 16/157 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++LELYCG G+  +        ++ +EI K ++E AR N   N  NN           T 
Sbjct: 319 NVLELYCGVGSLGISTGLEKLNIIGIEIVKQAIENARENAKLNEFNNA----------TY 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329
                 +  + K+I +++   K + +DPPRSGLD   +  +       I+Y+SC+  +L 
Sbjct: 369 YCGDVYKVIKEKNITLNN---KVVLLDPPRSGLDKELIDFLVNNNADKIIYVSCDLGTLI 425

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD++I  S  + I  +  +D F  T H+E    + +K
Sbjct: 426 RDITIFDSFGYDINFVKGYDVFKNTSHIETLSFITKK 462


>gi|254517049|ref|ZP_05129107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [gamma proteobacterium
           NOR5-3]
 gi|219674554|gb|EED30922.1| 23S rRNA (uracil-5-)-methyltransferase RumA [gamma proteobacterium
           NOR5-3]
          Length = 402

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 22/185 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGI--QGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPS 243
           F Q N+  N  M EWV A    I     +LEL+ G+GNF+ VL    ++ + AV+   P+
Sbjct: 231 FRQGNSAQNQRMREWVRAKVLQIPTSSPVLELFAGSGNFTEVLVGAAYESICAVDSFGPA 290

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E    ++ A  +  V             + R+   +   +++    R K + +DPPR G
Sbjct: 291 IE----DLQARSLPGVT-------GLCSNLDRD---DSAAELEAQLSRAKLLLLDPPREG 336

Query: 304 LDDATVGMVQAYPH---ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECG 359
           L +    + +A PH   I+YISCN  +LCRDL + +     ++ +   D FP T H+E  
Sbjct: 337 LKNIGDYLHRA-PHLNTIIYISCNLATLCRDLQAAMEHKFELQEVQPLDLFPQTPHIEAL 395

Query: 360 VLLVR 364
            +L R
Sbjct: 396 TVLKR 400


>gi|157149945|ref|YP_001449932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157074739|gb|ABV09422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 454

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 306 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 366 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 413

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + +  +   D FP+T   E  V L ++ S
Sbjct: 414 DLVKLSRVYDVHYIQSVDMFPHTARTEAVVKLSKRES 450


>gi|282599565|ref|ZP_06257306.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia
           rustigianii DSM 4541]
 gi|282568519|gb|EFB74054.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia
           rustigianii DSM 4541]
          Length = 331

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 25/186 (13%)

Query: 186 SFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           SF Q N  +   +     EWV   T      L +L+CG G F L  A    ++  +EI  
Sbjct: 165 SFFQTNPIVAAKLYQTAREWVQELTIS---SLWDLFCGVGGFGLHCADQNIKLTGIEICA 221

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P++E AR +     +  V+   + S  F  +          +DI         + V+PPR
Sbjct: 222 PAIECARQSAQELGLQKVEFQALDSTNFATSR---------QDIP------DLVLVNPPR 266

Query: 302 SGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
            G+       +   +P +ILY SCN  ++  DL  LS  + + ++ LFD FP+T H E  
Sbjct: 267 RGIGKNLCNYLSDMHPEYILYSSCNAQTMAEDLQQLS-GYQVCKVQLFDMFPHTAHYEVL 325

Query: 360 VLLVRK 365
            LL RK
Sbjct: 326 CLLKRK 331


>gi|117928603|ref|YP_873154.1| RNA methyltransferase [Acidothermus cellulolyticus 11B]
 gi|117649066|gb|ABK53168.1| 23S rRNA m(5)U-1939 methyltransferase [Acidothermus cellulolyticus
           11B]
          Length = 397

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 21/206 (10%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           D RL    R   +R    +F Q +      ++  +++      G+ +L+LY G G F+  
Sbjct: 206 DRRLIEVVRGRRFRLRPTTFWQVHPAAADLLIGAIVSGVTPAPGERVLDLYAGAGLFAAF 265

Query: 227 LARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           LA       RV+AVE  + +   A  N+A    + V++ R    EF  A     E     
Sbjct: 266 LAESVGSSGRVVAVEGDRGAAADASVNLA--EFDTVEVRRADVAEFLAAAADRGE----- 318

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCRDLSILS-TTHT 340
                  RF  +  DPPR+GL       + A  P  I Y++C+P +L RDL++ S   + 
Sbjct: 319 -------RFDIVVADPPRTGLGPPNARRICALRPRAIGYVACDPAALARDLAVFSEAGYQ 371

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
              +  FD FP T H+EC  +L  +P
Sbjct: 372 AVSVRAFDIFPQTHHVECVAILRPEP 397


>gi|256544922|ref|ZP_05472293.1| TrmA family tRNA methyltransferase [Anaerococcus vaginalis ATCC
           51170]
 gi|256399421|gb|EEU13027.1| TrmA family tRNA methyltransferase [Anaerococcus vaginalis ATCC
           51170]
          Length = 415

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 156/392 (39%), Gaps = 81/392 (20%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
            G  ++D  Y+ Q+  K + ++  +L     ++ +L+I   +   YR +    I  +G  
Sbjct: 75  GGCSIMDINYKSQIKLKKNLIKNALLKSAKIKIDDLEILEGKEFGYRNKIRLQINKNGKL 134

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
            Y+  +                       ++E+   +  + L+R  L +I+ +T    + 
Sbjct: 135 AYNKKYSND--------------------LVEIKDCLLAKDLIRKNLEKIEEITKDITKK 174

Query: 118 IVTLIYHRLLDDAWREC--AIRLRDA---------LHARKYQIQLIGRANKTKICLDRDY 166
               +    +    +E    I+++D               Y I LI +            
Sbjct: 175 YPNSLEEITIRANEKEILLNIKIKDEKIIPYIKNQYKNSTYNINLINKK----------- 223

Query: 167 VDERLTVAGRT-LIYRQIE-------NSFTQPNAGINVHMLEWVLAATKGIQGD---LLE 215
             E + ++G+  L+Y  +        N F Q    +N +M E +    K   G+   +L+
Sbjct: 224 --ETINISGKNYLVYNLLGKKFKITMNDFYQ----VNDYMTEKLYKTAKDFLGENQKVLD 277

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           L+CG+   S+ +  + D V+ +EI K +++ A+ N   N + + K +  ++         
Sbjct: 278 LFCGSATSSIAI--NDDHVVGIEINKNAIKDAKANAKENDLKDYKFIAKNA--------- 326

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI--LYISCNPDSLCRDLS 333
               N + D  I   +   I +DPPR GLD   +  +        +YISCNP +L RD+ 
Sbjct: 327 ----NYIDDKFIKKEKIDAIVLDPPRRGLDKEIIKTIAKTKIKKIVYISCNPQTLARDIK 382

Query: 334 -ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                 + +E++   D F  T H+E   L+ R
Sbjct: 383 RFQEKGYKLEKIKGCDMFSETMHVEMVALIAR 414


>gi|195978633|ref|YP_002123877.1| RNA methyltransferase TrmA family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225868040|ref|YP_002743988.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus]
 gi|195975338|gb|ACG62864.1| RNA methyltransferase TrmA family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225701316|emb|CAW98335.1| putative RNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 455

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 155/390 (39%), Gaps = 62/390 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F        +EP HYR + +F     G  +   +
Sbjct: 89  YPKQLYFKDDIIRQALKKFKPKGYEDFEIRHTLGMAEPQHYRAKLQFQTRSFGGSVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEM----------------MATIRLEPLLRAKL-- 104
           F + +   + ID  +    L  A++  +                +A IR   + RA+   
Sbjct: 149 FSEGSHRLVAIDDCLVQDQLTQAIVNRVTQLLDRHRIPIYNERRVAGIRTVMVRRAQASD 208

Query: 105 -FQIDYLTSQSDQ-----AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
             Q+ +++S+  +     A +T  + ++   A    A +  D   A            KT
Sbjct: 209 QVQLIFVSSKEVRLAGLIAELTAAFPQIRTVALNINASKTSDIYGA------------KT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELY 217
           +I   ++ + E +      L  R    +F Q N     V   + V A     +  +++ Y
Sbjct: 257 EILWGQETIQEEVLSYSFALSPR----AFYQLNPKQTEVLYSQVVQALDPTAEEHIIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G+  L +A     V  ++I   ++  AR N  A   +N       ++E   +   E 
Sbjct: 313 CGVGSIGLAVADKVRSVRGMDIIPEAIADARKNAQALGFDNAYYETGKAEELIPSWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLQTILHYQPAKMIYVSCNTSTLARDLVSL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + +  +   D FP+T   E  V L ++
Sbjct: 421 VQVYDVIYIQSVDMFPHTARTEAVVKLQKR 450


>gi|190569470|ref|ZP_03022333.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
 gi|190559418|gb|EDV13440.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
          Length = 134

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 14/146 (9%)

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LA     V  +++   ++  AR N   +   N K     ++++     +E     
Sbjct: 1   TIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE----- 55

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTH 339
                   +R   I VDPPR+G DD  +  +++  P  ++Y+SCNP SL RD+  L  ++
Sbjct: 56  -------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSY 108

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E +   D FP+T H+E  V LVRK
Sbjct: 109 EVEYVQPVDMFPHTAHVENVVKLVRK 134


>gi|325690901|gb|EGD32902.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 464

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N + N   V  +++   + 
Sbjct: 321 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNATLNGITNAHYVCDTAENAMKT 380

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 381 WLKE------------GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 428

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 429 DIKLYQELGYELKKVQPVDLFPQTHHVECVALLVK 463


>gi|301301048|ref|ZP_07207208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851318|gb|EFK79042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 459

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G   L ++     V  ++I   ++E A+ N   +   N+           + 
Sbjct: 317 LVDAYCGVGTIGLFVSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNI---------HYEV 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330
            + E  F +      +++    + VDPPR+GLDD  +  +  Y P+  +Y+SCNP +L R
Sbjct: 368 GKAEDLFAKWTK---NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +E +   D FP T  +E  V L +K
Sbjct: 425 DLVKLVKIYNVEYIQSVDMFPQTARVEAVVKLSKK 459


>gi|271500850|ref|YP_003333875.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Dickeya dadantii
           Ech586]
 gi|270344405|gb|ACZ77170.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Dickeya dadantii
           Ech586]
          Length = 376

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 27/188 (14%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL-AVEI 239
            SF Q N  +   +     +WV  +T  I+  L +L+CG G F L  A   DRVL  +EI
Sbjct: 208 QSFFQTNPVVAAALYDTARQWV--STLPIR-SLWDLFCGVGGFGLHCAGP-DRVLTGIEI 263

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  ++  A+++     + NV    + S  F            ++  D+       + V+P
Sbjct: 264 SPEAIACAQHSATLLGLENVSFAALDSTRFA--------VGEMQTPDL-------VIVNP 308

Query: 300 PRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           PR G+       +   A P++LY SCN +S+ +D++ L   + I+++ LFD FP+T H E
Sbjct: 309 PRRGIGAELCDYLSRMAPPYLLYSSCNAESMAKDIARLP-AYQIQQVQLFDMFPHTAHYE 367

Query: 358 CGVLLVRK 365
              LL R+
Sbjct: 368 VLTLLQRR 375


>gi|227891765|ref|ZP_04009570.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC
           11741]
 gi|227866424|gb|EEJ73845.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC
           11741]
          Length = 459

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G   L ++     V  ++I   ++E A+ N   +   N+           + 
Sbjct: 317 LVDAYCGVGTIGLFVSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNI---------HYEV 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330
            + E  F +      +++    + VDPPR+GLDD  +  +  Y P+  +Y+SCNP +L R
Sbjct: 368 GKAEDLFAKWTK---NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +E +   D FP T  +E  V L +K
Sbjct: 425 DLVKLVKIYNVEYIQSVDMFPQTARVEAVVKLSKK 459


>gi|78044405|ref|YP_359958.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996520|gb|ABB15419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 441

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 17/153 (11%)

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G+ +L  AR    V+ VE  + +VE A+ N   N + NV       +E        
Sbjct: 302 YSGVGSLTLPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEE-------- 353

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSI 334
               +L  +    YRF  I +DPPR G+    +  +++  P  I+Y+SCNP +  RDL I
Sbjct: 354 ----KLPWLLKKGYRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKI 409

Query: 335 LSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
           L+ T  + +E +   D F  T H+E  VLL +K
Sbjct: 410 LAETGYYPVE-ITPVDMFSQTMHVENVVLLKKK 441


>gi|47459337|ref|YP_016199.1| SAM-dependent methyltransferase [Mycoplasma mobile 163K]
 gi|51316610|sp|Q6KHE2|Y5020_MYCMO RecName: Full=Uncharacterized RNA methyltransferase MMOB5020
 gi|47458667|gb|AAT27988.1| SAM-dependent methyltransferases [Mycoplasma mobile 163K]
          Length = 363

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 18/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSF Q N  +  +++   ++    +  ++L+LY G G  SL++A     V  VE    S+
Sbjct: 194 NSFYQVNKEV-ANLIYNQISEFINLNENVLDLYSGIGTISLLIAAKAKSVTGVERNLDSI 252

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E A +N   N + NV  +    ++  + +++ + +            F T+ VDP R GL
Sbjct: 253 EDANFNKEFNKIKNVNFIH---QDVIKYLKQNKTY------------FDTVIVDPARRGL 297

Query: 305 DDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + ++ +  P  I+Y+SCN  +   + +     + IE +  +D FP T H+E  ++L
Sbjct: 298 EEDIIELILKLKPQKIIYLSCNVGTQASNFNKFKHEYQIEFIKSYDMFPQTYHIESLMVL 357

Query: 363 VR 364
            +
Sbjct: 358 KK 359


>gi|199597997|ref|ZP_03211421.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           rhamnosus HN001]
 gi|199591087|gb|EDY99169.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           rhamnosus HN001]
          Length = 455

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 27/218 (12%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-----GI 209
             ++++   + Y+ E  T++GRT  ++    +F Q    +N    E + A  K       
Sbjct: 258 GKESRLLAGQPYIQE--TLSGRT--FQLSPQAFLQ----LNPKQTEQLYAIAKDALQLAP 309

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG G   + LA     +  ++    ++  A+ N   N  NN +         
Sbjct: 310 DDTLIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTRYF------- 362

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327
               + E  F +     IH      + VDPPRSGL+   +  ++Q  P    YISCNP +
Sbjct: 363 --VGKAETLFPKWLKEGIHP---NAVIVDPPRSGLERPFIDALLQLSPQKFAYISCNPST 417

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L RDL  L+  + ++ +   D FP T   E  V   R+
Sbjct: 418 LARDLVPLAKHYQVDWIQSIDMFPQTARCEAVVKFTRR 455


>gi|307708648|ref|ZP_07645111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           NCTC 12261]
 gi|307615222|gb|EFN94432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           NCTC 12261]
          Length = 459

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 311 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 368 MK-----NWLKD----GIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 418

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + + ++   D FP T H+E   LLVR
Sbjct: 419 DIKLYRELGYELNKVQPVDLFPQTHHVEAVSLLVR 453


>gi|306832906|ref|ZP_07466038.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC
           700338]
 gi|304424805|gb|EFM27939.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 450

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G      A     V  ++I   ++  A+ N       N       +++    
Sbjct: 308 VIDAYCGVGTIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+G+DD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGIDDKLLDTILKYQPAKMVYVSCNTATLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  LS  + +  +   D FP+T   E  V LVRK
Sbjct: 416 DLVKLSKVYDVHYIQSVDMFPHTARTEAVVKLVRK 450


>gi|325474668|gb|EGC77854.1| hypothetical protein HMPREF9353_00701 [Treponema denticola F0402]
          Length = 404

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 6/206 (2%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           ++  KI    +  D  + +AG+ + +  +   F Q N  +   ++  +    + I   +L
Sbjct: 194 SDGEKIFTQDNAKDCEVRLAGKRIKFNPL--GFFQSNLEMTEKLINTIFEYAE-ISSSVL 250

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + Y G G FSL        +  VE  K ++  A+ N   N  ++  +       F +   
Sbjct: 251 DFYSGVGTFSLFAYDQAKEIHLVEHNKHALAYAQENFLINSSSSGIVREKKENGFPKIFY 310

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332
              +            +F T+FVDPPR G+D   +  +       I YISC+P +  RD 
Sbjct: 311 HALDGKNWAKTKESKLKFDTVFVDPPRIGIDKEALSWLCSSGTRQIFYISCDPVTFARDT 370

Query: 333 -SILSTTHTIERLALFDQFPYTRHME 357
            S+L + + +E+  LFD +P T H+E
Sbjct: 371 ASLLVSGYKLEKHFLFDFYPQTHHIE 396


>gi|313892294|ref|ZP_07825887.1| conserved domain protein [Dialister microaerophilus UPII 345-E]
 gi|313119432|gb|EFR42631.1| conserved domain protein [Dialister microaerophilus UPII 345-E]
          Length = 260

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+    V+ +EI K ++E A+ N   N + NV+       ++   
Sbjct: 25  VIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAKY--- 81

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                    L ++     + + + +DP R+G D+  +  +   +   I+Y+SCN  +  R
Sbjct: 82  ---------LPELAKKGIKAEVVVLDPVRAGCDEKVIEAIGKISPKRIVYVSCNVATQAR 132

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           D+  LS   + + ++   D FP T H+E   LL +  +  H
Sbjct: 133 DIERLSKKGYKLIKIQPIDMFPKTTHVETVALLYKLNTEHH 173


>gi|45655997|ref|YP_000083.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|51316692|sp|Q72W54|Y086_LEPIC RecName: Full=Uncharacterized RNA methyltransferase LIC_10086
 gi|45599230|gb|AAS68720.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 415

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 16/193 (8%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           + +++      F+Q N  +    LE +       Q  +LELYCG+G  ++ L       L
Sbjct: 235 KKIVWEIPAGGFSQVNRYLIAPWLEKIFELVPNNQNRILELYCGSGLIAIALKSKTTSWL 294

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
             EI+   V+ A+ N+  N +        SS +F + +  E ++   +++   S+     
Sbjct: 295 GYEISSDCVQQAKRNVLLNGI--------SSCDF-KTLNLETDWIDSEEVLNSSF----W 341

Query: 296 FVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPY 352
            ++PPR+GL    +  +++  P+  LY SCN  +L RDLS+ L+  + +  + L D FP 
Sbjct: 342 IMNPPRAGLSKKVLQTLIKTSPNGFLYSSCNHSTLVRDLSLFLNKDYKLSNVTLVDFFPR 401

Query: 353 TRHMECGVLLVRK 365
           T+H E  V + +K
Sbjct: 402 TKHFEVIVKVEKK 414


>gi|224826668|ref|ZP_03699769.1| RNA methyltransferase, TrmA family [Lutiella nitroferrum 2002]
 gi|224601269|gb|EEG07451.1| RNA methyltransferase, TrmA family [Lutiella nitroferrum 2002]
          Length = 516

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 34/185 (18%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  M+   L       G+ + +++CG GNF+L +AR    V  +E ++  V+
Sbjct: 270 FTQVNPEINNVMVTRALRLLDPQPGERIADMFCGIGNFTLPIARSGADVHGMEGSEALVK 329

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY----RFKTIFVDPPR 301
            A  N + N + +               +   E   L D+   S+    +F  + VDPPR
Sbjct: 330 RAVENASHNRLEH---------------KVSYEMANLFDVTEESFAALGKFDKMLVDPPR 374

Query: 302 SG-------LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPY 352
            G       L D T     A   I+Y+SCNP +L RD  IL  T  +T++   + + FP+
Sbjct: 375 DGAVQLLKALTDDT-----APQRIVYVSCNPATLARDAGILVNTKGYTLKAAGIINMFPH 429

Query: 353 TRHME 357
           T H+E
Sbjct: 430 TAHVE 434


>gi|238789653|ref|ZP_04633436.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia frederiksenii
           ATCC 33641]
 gi|238722206|gb|EEQ13863.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia frederiksenii
           ATCC 33641]
          Length = 376

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 18/157 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    ++  +EI+  ++  AR +     + NV    + S  F  
Sbjct: 236 SMWDLFCGVGGFGLHCADTETQLTGIEISTEAIACARQSADQLGLKNVNFAALDSTRFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLC 329
           A   E +  +L            + V+PPR G+       + Q  P  ILY SCN +++ 
Sbjct: 296 A---EAQVPQL------------VLVNPPRRGIGTELCRYLSQMAPEFILYSSCNAETMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +D++ L+  + IER+ LFD FP+T H E   LL   P
Sbjct: 341 KDIAQLAD-YRIERVQLFDMFPHTSHYEVLTLLTLSP 376


>gi|224007687|ref|XP_002292803.1| RNA methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220971665|gb|EED89999.1| RNA methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 154

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 19/155 (12%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNV----KIVRMSS 266
           LLE+YCG G  ++ LA+      ++AVE+ +    A R N   N  +      K ++  S
Sbjct: 2   LLEMYCGCGAHTIPLAKSALLSEIVAVELDERLANACRRNCRLNGCDAAEWAKKTLKDQS 61

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISC 323
           K+ T    ++  FN       H   F  + VDPPR GLD     +      + H++YISC
Sbjct: 62  KQRTNT--KQPSFN-------HYNNFDILLVDPPREGLDKIVCDLAINKGTFQHVVYISC 112

Query: 324 NPDSLCRDLSILSTTH-TIERLALFDQFPYTRHME 357
              +L RDL IL      +  LA+ D FP T  +E
Sbjct: 113 GRVALLRDLDILCKGGFNVVNLAVIDLFPGTDAVE 147


>gi|15888078|ref|NP_353759.1| RNA methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|50401625|sp|Q8UHE7|Y735_AGRT5 RecName: Full=Uncharacterized RNA methyltransferase Atu0735
 gi|15155704|gb|AAK86544.1| RNA methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 416

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 16/180 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             FTQ        M E +LA   G    + +L+CG+G F+L LAR   RV AVE    ++
Sbjct: 249 GGFTQATKQAEDAMAELMLAHV-GKSKRIADLFCGSGTFALRLAR-IGRVHAVEAEDKAL 306

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +A   + AA +   +K V +  ++     RR    + LK+ D        +  DPPR+G 
Sbjct: 307 KA--LDFAARNTQGLKPVSVEKRDL---FRRPLMTSELKNYD-------AVVFDPPRAGA 354

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           +     + ++    I+ +SCNP +L RDL+IL+   + + R+   DQF ++ H+E   +L
Sbjct: 355 EVQCKELARSTVKKIVAVSCNPLTLARDLAILTEGGYRVTRVTPVDQFLWSPHVEAVAVL 414


>gi|325569856|ref|ZP_08145850.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156979|gb|EGC69147.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 458

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 153/388 (39%), Gaps = 53/388 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGD------ 56
           Y++QL  K D L+Q +  F+    Q F          P HYR +A+F + ++        
Sbjct: 92  YDKQLDFKKDLLKQALEKFKPKGYQQFELRDTLGMDVPWHYRNKAQFQLRYNSQTKRIEA 151

Query: 57  DLYH------IMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDY 109
            LY       +  D    +       + G + L+N   I +    +   +LR  + +I  
Sbjct: 152 GLYEMESHRLVAIDDCLVQEQDTQKVINGIVQLLNKYQIPIYDERKNSGILRTLMVRIGI 211

Query: 110 LTSQSDQAIVTLIYHRLLDDAW-RECAIRLRDALHARKYQIQLIGRANKTKICLD----- 163
            T +     +T        +A  RE   RL   +      I    +  KT + +      
Sbjct: 212 ATGEVQVVFITNSVKLPQKNALIREINQRLPQVVS-----IMQNVQNKKTSVVMGEETIH 266

Query: 164 ---RDYVDERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCG 219
              ++ ++ERL      L +     +F Q N    +V   E V A        +++ YCG
Sbjct: 267 LWGKEAIEERLN----ELTFDLSARAFFQLNPQQTSVLYQEGVKALDLSKNETVVDAYCG 322

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A +   V  ++I   ++E A+ N       N      +++E        + F
Sbjct: 323 VGTIGLSVAPYAKEVRGMDIIPQAIENAQENAHRIGAQNTHYETGTAEELL-----PKWF 377

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
           N         ++  +I VDPPR+GLD+  +  +   P   ++YISCN  +L RDL  L+ 
Sbjct: 378 N-------EGFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLARDLVQLAK 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
              +E L   D FP T   E  V L RK
Sbjct: 431 VFHVEYLQSVDMFPQTARCEVVVKLTRK 458


>gi|290770981|emb|CBK33770.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
          Length = 451

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 16/183 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 280 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 339

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 340 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 387

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC  L
Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVECVAL 447

Query: 362 LVR 364
           LV+
Sbjct: 448 LVK 450


>gi|332362207|gb|EGJ40007.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1056]
          Length = 456

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFSFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVHYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVKLSKVYDVRYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|313667852|ref|YP_004048136.1| tRNA methyltransferase [Neisseria lactamica ST-640]
 gi|313005314|emb|CBN86747.1| putative tRNA methyltransferase [Neisseria lactamica 020-06]
          Length = 452

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ N   N  M+  V+      +G+ + +L+CG GNFSL +A+    V+ +E A+  
Sbjct: 265 GDFTQINTDTNRLMVSRVVKMLDIRRGERIADLFCGLGNFSLPMAKSGADVVGIEGAENL 324

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   N  +          +F  A      F+  +       RF  + +DPPRSG
Sbjct: 325 VRRARQNARLNGCDR-------QTDFIAA----NLFDCTEKTVASWERFDKMLIDPPRSG 373

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
             +    +   Y    I+Y+SCNP +L RD  +L    + + +  + + F  T H E
Sbjct: 374 AYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYMLSQAGIMNMFAQTSHTE 430


>gi|186681361|ref|YP_001864557.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186463813|gb|ACC79614.1| RNA methyltransferase, TrmA family [Nostoc punctiforme PCC 73102]
          Length = 468

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 19/155 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G  +L LA+       +E+   +VE A  N   N ++NV  +  + ++    
Sbjct: 313 LVDAYCGIGTLTLPLAKKVRIATGLEVQPAAVEQALLNAHCNGIDNVTFLVGAVEKLLPK 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
           M    E                + +DPPR G D A +  + Q  P  I+Y+SC   +L R
Sbjct: 373 MGTIPE---------------VVILDPPRKGCDRAVIDTLRQLKPSRIVYVSCKVATLAR 417

Query: 331 DLSILS--TTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +L     +TI R+   D FP T H+E    LV
Sbjct: 418 DLKLLCQDGQYTITRVQPADFFPQTAHVEAAAFLV 452


>gi|322833209|ref|YP_004213236.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rahnella sp. Y9602]
 gi|321168410|gb|ADW74109.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rahnella sp. Y9602]
          Length = 376

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 20/168 (11%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +WV    +G    + +L+CG G F L  A    ++  +EI+  ++  A+ +     + NV
Sbjct: 227 DWVRG--RGDIRSMWDLFCGVGGFGLHCATPQMKLTGIEISAEAIACAKESAVRLGLQNV 284

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPH 317
           +   + S  F            + D+         + V+PPR G+  A    +   A   
Sbjct: 285 EFQALDSTGFATGK------GEVPDL---------VLVNPPRRGIGKALCEYLSHMAPDT 329

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ILY SCN  ++ +DL++L   H I R+ LFD FP+T H E   LLVR+
Sbjct: 330 ILYSSCNAQTMAQDLALLPDYH-ILRVQLFDMFPHTAHYEVMALLVRR 376


>gi|300214218|gb|ADJ78634.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus salivarius CECT
           5713]
          Length = 459

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G   L ++     V  ++I   ++E A+ N   +   N+           + 
Sbjct: 317 LVDAYCGVGTIGLFVSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNI---------HYEV 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330
            + E  F +      +++    + VDPPR+GLDD  +  +  Y P+  +Y+SCNP +L R
Sbjct: 368 GKAEDLFAKWTK---NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLAR 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +E +   D FP T  +E  V L +K
Sbjct: 425 DLVKLVKIYNVEYIQSVDMFPQTARVEAVVKLSKK 459


>gi|253996084|ref|YP_003048148.1| 23S rRNA 5-methyluridine methyltransferase [Methylotenera mobilis
           JLW8]
 gi|253982763|gb|ACT47621.1| RNA methyltransferase, TrmA family [Methylotenera mobilis JLW8]
          Length = 458

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 88/199 (44%), Gaps = 29/199 (14%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           L Y    N FTQ N  IN  M+     L A +  +  + + +CG GNF+L +AR   +VL
Sbjct: 277 LTYPFKPNEFTQVNPQINQVMIRRAMQLLAPQAHE-KIADFFCGIGNFTLPIARSGAQVL 335

Query: 236 AVEIAKPSVEAARYNIAANHVNNVK-----IVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
            +E     VE A  +   N + +VK     + +M+ +  T+                   
Sbjct: 336 GLEGLANLVERANESAQLNEIKHVKFGVADLFKMTPEALTELG----------------- 378

Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346
           RF    VDPPR G  +    +     P  I+Y+SCNP +L RD  +L     + ++   +
Sbjct: 379 RFDKWLVDPPRDGAFELVKALDASNQPGSIVYVSCNPATLARDAGVLVNEKGYQLQAAGV 438

Query: 347 FDQFPYTRHMECGVLLVRK 365
            + FP+T H+E   L   K
Sbjct: 439 INMFPHTAHVESIALFTLK 457


>gi|332199219|gb|EGJ13297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA41317]
          Length = 458

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL  L   + +  +   D FP+T   E  V L+
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVVKLI 448


>gi|317488920|ref|ZP_07947450.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA]
 gi|316911994|gb|EFV33573.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA]
          Length = 405

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR-V 234
           L +R    SF Q NA +   +L        G  G    ++ YCG G   LV A+   R V
Sbjct: 216 LSFRISSQSFYQVNA-VQTEVLYERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQV 274

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + V+    +V  AR N   N V N +     +  F   MR         D+         
Sbjct: 275 IGVDTVASAVRDARENAKHNGVENARFAVGDAGAF---MRERAAAGDAVDV--------- 322

Query: 295 IFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
           + +DPPR+G  +      +  A   I+YISCNP +  RDL+ L    + +  +   D FP
Sbjct: 323 LLMDPPRAGSSEEFLAAAVTLAPRRIVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFP 382

Query: 352 YTRHMECGVLLVRKPSGWHQ 371
           +T H+E  + LV +  G+ +
Sbjct: 383 HTDHIET-IALVERVEGFFE 401


>gi|307941543|ref|ZP_07656898.1| 23S rRNA [Roseibium sp. TrichSKD4]
 gi|307775151|gb|EFO34357.1| 23S rRNA [Roseibium sp. TrichSKD4]
          Length = 422

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 41/217 (18%)

Query: 170 RLTVAGRTLIYRQIE------NSFTQPNAGI-------NVHMLEWVLAATKGIQGDLLEL 216
           RLTV G TL+  +        ++ T P  G           +  WVL    G    + +L
Sbjct: 214 RLTVNGETLLEIRPPLLDMGGSALTPPPGGFVQATKDAEEALSAWVLKGV-GKAKQVADL 272

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           + G+G F+L LAR   +V AVE   P+++A   + A      +K + M  ++     R  
Sbjct: 273 FAGSGTFALRLARQA-KVHAVEGEAPALKA--IDTALRRSQGLKTLTMEKRDL---FRSP 326

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSG-------LDDATVGMVQAYPHILYISCNPDSLC 329
                LKD D        +  DPPR+G       L ++TV  V A      +SCNP +  
Sbjct: 327 LIAEELKDYD-------AVVFDPPRAGAQAQAEQLANSTVKTVVA------VSCNPATFA 373

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL IL    + ++ +   DQF Y+RH+E   +L RK
Sbjct: 374 RDLRILIDGGYELQSVTPVDQFLYSRHIEVVGILTRK 410


>gi|254384466|ref|ZP_04999807.1| RNA methyltransferase [Streptomyces sp. Mg1]
 gi|194343352|gb|EDX24318.1| RNA methyltransferase [Streptomyces sp. Mg1]
          Length = 443

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER    GRT  YR     F Q +      +++ V+      +G++ L+LYCG G 
Sbjct: 251 RPFVRERAD--GRT--YRVGMGGFWQVHPQAADTLIKAVMQGLMPRKGEMALDLYCGVGI 306

Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA        VL +E  K +VE AR+N+      +   VR+   +    + +    
Sbjct: 307 FAGALAERLGETGAVLGIESTKRAVEDARHNL-----EDFPRVRIEQGKVEAILPK---- 357

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
             + + D+       + +DPPR+G    TV  +       I Y++C+P +L RDL     
Sbjct: 358 TGITECDL-------VVLDPPRAGAGKQTVRHIAGLSARRIAYVACDPAALARDLGYFKD 410

Query: 338 -THTIERLALFDQFPYTRHMECGVLL 362
             + +  L +FD FP T H+EC  +L
Sbjct: 411 HGYKVRTLRVFDLFPMTHHVECVAIL 436


>gi|302554686|ref|ZP_07307028.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472304|gb|EFL35397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces
           viridochromogenes DSM 40736]
          Length = 442

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER    GRT  +R     F Q +      ++  V+      +GD+ L+LYCG G 
Sbjct: 250 RPFVRERAD--GRT--HRVGGGGFWQVHPKSADTLVTAVMQGLLPRKGDMALDLYCGVGL 305

Query: 223 FSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA R  D+  VL +E  K +VE AR+N+A         VR+   +    + R    
Sbjct: 306 FAGALADRVGDQGAVLGIESGKRAVEDARHNLA-----EFDRVRIEQGKVESVLPR---- 356

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-S 336
             + ++D+       I +DPPR+G    TV  + +     I Y++C+P +L RDL     
Sbjct: 357 TGITEVDL-------IVLDPPRAGAGRKTVEHLTSLRARRIAYVACDPAALARDLGYFRD 409

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + +  L  FD FP T H+EC  +L
Sbjct: 410 GGYRVRTLRAFDLFPMTHHVECVAIL 435


>gi|257126196|ref|YP_003164310.1| (uracil-5)-methyltransferase [Leptotrichia buccalis C-1013-b]
 gi|257050135|gb|ACV39319.1| (Uracil-5)-methyltransferase [Leptotrichia buccalis C-1013-b]
          Length = 476

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 15/158 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +L+ G G    ++++   +V  +E+   +VE A  N   N++ N   +       
Sbjct: 328 EATVFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDV--- 384

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
                    F +L + D    +   + +DPPR+G+ + T+  +  Y   +I+Y+SCNP +
Sbjct: 385 ---------FAKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKT 435

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L  DL       + + R ++ D FP T H+E   LL +
Sbjct: 436 LMTDLIKFGEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473


>gi|332200601|gb|EGJ14673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA41317]
          Length = 451

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + ++++   D FP T H+E   LLV++
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVKE 451


>gi|283784622|ref|YP_003364487.1| 23S rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282948076|emb|CBG87641.1| 23S rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 375

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    R+  +EI+  ++  A  + A   + N++   + S  F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPEMRLTGIEISPEAIACATQSAAELGLTNLQFQALDSTRFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                +                + V+PPR G+  A    +   A   I+Y SCN  ++ +
Sbjct: 297 QESVPQL---------------VLVNPPRRGIGKALCDYLGKMAPQFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D++ L+  + IER+ LFD FP+T H E   LL+R 
Sbjct: 342 DIASLAG-YRIERVQLFDMFPHTAHYEVLTLLIRN 375


>gi|251789980|ref|YP_003004701.1| 23S rRNA methyluridine methyltransferase [Dickeya zeae Ech1591]
 gi|247538601|gb|ACT07222.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Dickeya zeae Ech1591]
          Length = 376

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 18/156 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L +L+CG G F L  A     +  +EI+  ++  AR + A   + NV    + S  F  
Sbjct: 236 SLWDLFCGVGGFGLHCAGADTPLTGIEISPEAIACARRSAAQLGLTNVSFAALDSTRFAV 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
              +  +                + V+PPR G+       +   A P++LY SCN +S+ 
Sbjct: 296 GEAQTPDL---------------VIVNPPRRGIGAELCDYLSHMAPPYLLYSSCNAESMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +D++ L   + I ++ LFD FP+T H E   LL R+
Sbjct: 341 KDITRLP-AYQIRQVQLFDMFPHTAHYEVLTLLQRR 375


>gi|262041046|ref|ZP_06014265.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041604|gb|EEW42656.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 375

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 25/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     +WV A    +Q  + +L+CG G F L  A    R+  +EIA
Sbjct: 207 QSFFQTNPAVASRLYATARDWVRALP--VQ-HMWDLFCGVGGFGLHCATPTMRLTGIEIA 263

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  AR + A   ++N+    + S +F      E +  +L            + V+PP
Sbjct: 264 PEAIACARQSAAQLGLSNLHFQALDSTQFAT---HEADTPQL------------VLVNPP 308

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+       +   A  +I+Y SCN  ++  D++ LS  + +ER+ LFD FP+T H E 
Sbjct: 309 RRGIGAELCDYLSRMAPLYIIYSSCNARTMATDIARLS-GYRVERVQLFDMFPHTAHYEV 367

Query: 359 GVLLVRK 365
             LLVR+
Sbjct: 368 LTLLVRE 374


>gi|212704019|ref|ZP_03312147.1| hypothetical protein DESPIG_02072 [Desulfovibrio piger ATCC 29098]
 gi|212672524|gb|EEB33007.1| hypothetical protein DESPIG_02072 [Desulfovibrio piger ATCC 29098]
          Length = 511

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 12/147 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL++YCG G   L+ A HFD VL +E  + +V  A  N       N +     +     A
Sbjct: 366 LLDVYCGAGAPGLLAAGHFDEVLGMEYDRRAVLLAERNARRFGFGNCRYEVGDAARLLTA 425

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCR 330
           + RE               +    +DPPR G+  +A   ++   P  ++YISCNP +L R
Sbjct: 426 LAREH----------GPGHWDHALLDPPRGGVAPEALEALLHLAPERLVYISCNPATLAR 475

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME 357
           D   LS  + + ++   D FP++ H+E
Sbjct: 476 DARALSADYELMQVTPLDLFPHSPHVE 502


>gi|126661911|ref|ZP_01732910.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38]
 gi|126625290|gb|EAZ95979.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38]
          Length = 470

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 22/207 (10%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221
           RDY+ E +      L +     SF Q N+    + L  +     G+ G+  + +LY G G
Sbjct: 281 RDYILEEM----EGLHFSINAKSFYQTNSD-QAYELYKITREFAGLTGNETVYDLYTGTG 335

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  +++   +V+ VE    ++  A+ N   N++ N +        +   M+     N 
Sbjct: 336 TIAQFVSKQAKKVIGVEAVPEAIIDAKANATRNNITNCEF-------YVGDMK-----NV 383

Query: 282 LKDIDIHSY-RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338
             D  I+ + +   I  DPPR G+    V M+     P I+Y+SCN  +  RDL+++   
Sbjct: 384 FNDEFINQHGQPDVIITDPPRDGMHKDVVEMLLKTDVPKIVYVSCNSATQARDLALMDEK 443

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + + R+   D FP T H+E  VLL ++
Sbjct: 444 YKVVRVRPVDMFPQTHHVENVVLLEKR 470


>gi|33601990|ref|NP_889550.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella
           bronchiseptica RB50]
 gi|50401528|sp|Q7WI42|RUMA_BORBR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|33576428|emb|CAE33506.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 466

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 38/261 (14%)

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170
            D+AIV ++ H L         +R   A H  ++ +Q   +   T   L+R++ D     
Sbjct: 190 GDEAIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYT 247

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLAR 229
           L   G  + YR  +  FTQ N  IN  M+   L       Q  + +L+CG GNF+L LA 
Sbjct: 248 LPEFGLRMPYRPTD--FTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLAT 305

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDI 287
                + VE +K   + A +  AA H                 +     F  L   ++D+
Sbjct: 306 QGREAVGVEGSKALTDRA-HEAAARH----------------GLGERTRFATLNLFEVDV 348

Query: 288 HSYR----FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--S 336
              R    F  + +DPPR G       +    P      I+Y+SCNP +L RD +I+   
Sbjct: 349 QWLRGLGYFDRMLIDPPREGAQAVAQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHE 408

Query: 337 TTHTIERLALFDQFPYTRHME 357
             + +    + + FP+T H+E
Sbjct: 409 GGYALRSAGVINMFPHTGHVE 429


>gi|153002005|ref|YP_001367686.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS185]
 gi|167012645|sp|A6WS34|RUMB_SHEB8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|151366623|gb|ABS09623.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS185]
          Length = 390

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 16/155 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L +L+CG G F L  A +   +  +EI   ++  A+ +     + NV+ + + S +F +
Sbjct: 249 SLWDLFCGVGGFGLHCASNDITLTGIEIEAEAIACAQMSAQMMGLENVQFMALDSTDFAK 308

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                            + +   I V+PPR G+ +A    +  +    ILY SCNP +L 
Sbjct: 309 GKSA-------------ADKPDLIIVNPPRRGIGEALCQSLSEFAPKAILYSSCNPKTLA 355

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +DL  +   H + ++ LFD FP+T H E   +LV+
Sbjct: 356 KDLEHIQGYH-LTKVQLFDLFPHTDHFEVLAMLVK 389


>gi|91776203|ref|YP_545959.1| 23S rRNA 5-methyluridine methyltransferase [Methylobacillus
           flagellatus KT]
 gi|123078812|sp|Q1H069|RUMA_METFK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|91710190|gb|ABE50118.1| 23S rRNA m(5)U-1939 methyltransferase [Methylobacillus flagellatus
           KT]
          Length = 445

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 26/195 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
            L Y      FTQ N  IN  ML   +   +   G+ + + +CG GNF+L +AR    V 
Sbjct: 253 NLTYPFKPTEFTQVNPYINRVMLRRAMQLLQPQPGERIADFFCGLGNFTLPIARSGASVF 312

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKT 294
            +E +   V  A  + A N +              Q   +E +  ++    + S  RF  
Sbjct: 313 GMEGSAALVARANESAALNSLAG------------QVEFQEADLFKMTPALLQSLGRFDK 360

Query: 295 IFVDPPRSG----------LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
             +DPPR G          ++DA          I+Y+SCNP +L RD  IL  T     L
Sbjct: 361 WLIDPPRDGAIELVKALPDIEDADADTSHVPQRIVYVSCNPATLARDAGILVHTKGYRLL 420

Query: 345 A--LFDQFPYTRHME 357
           A  + + FP+T H+E
Sbjct: 421 ASGVINMFPHTSHVE 435


>gi|237745481|ref|ZP_04575961.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229376832|gb|EEO26923.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 451

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 116/278 (41%), Gaps = 40/278 (14%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +R ++ QI+         +VT +  R++    +E   RL+        Q  L  +   T 
Sbjct: 185 IRQQVPQIEVAIGNDRDGLVTALLLRIMAPLTKEDENRLKRFADDHDIQWWLQSKGPDT- 243

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIE---------NSFTQPNAGINVHMLEWVLAATKGIQ 210
           I L           AG  L YR  E           FTQ N  IN  ++   +   +  +
Sbjct: 244 ITL--------FYPAGNKLKYRLPEFNVEMPFKPGDFTQVNHHINPVLVSRAIRLLEIEK 295

Query: 211 GD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            D + +L+CG GNFSL +ARH   V+ +E ++   E A+ +   N +          +E 
Sbjct: 296 NDRIADLFCGLGNFSLPIARHAAEVVGIEGSEILTERAKESALLNGL----------EEK 345

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--------ILYI 321
           T+   R      +KD  I    F  + +DPPR G       + +   H        I+Y+
Sbjct: 346 TRFETRNLFEMTVKDW-IGLGPFDKVLIDPPRDGAAAVCQSIAELGKHQEALRPRRIVYV 404

Query: 322 SCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357
           SCNP +L RD  IL T   + +    + + FP+T H+E
Sbjct: 405 SCNPSTLARDAGILVTEGGYRLHLAGVVNMFPHTSHVE 442


>gi|289207775|ref|YP_003459841.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. K90mix]
 gi|288943406|gb|ADC71105.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. K90mix]
          Length = 452

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 88/198 (44%), Gaps = 23/198 (11%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           +   F Q +AGIN  M+   L A     G  +L+L+CG GNF+L LAR            
Sbjct: 264 MPTDFIQVHAGINRKMVPQALEALDLQPGQRVLDLFCGLGNFTLPLARSV---------- 313

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAM---RRER----EFNRLKDIDIHSYRFKT 294
            S       +    V++  + R  +    Q +   R ER    +   LK+      R+  
Sbjct: 314 -SDGEVPGEVVGVEVDDAMLARARANARDQGIANTRYERADLDDVEALKNAGWLVERYDR 372

Query: 295 IFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSILSTTHT--IERLALFDQFP 351
           + +DPPR+G       +  Q    ++Y+SCNP +L RD   L   H   +ER  + D FP
Sbjct: 373 VLLDPPRTGAAAVIEALAPQRIERMVYVSCNPATLARDAERLVHHHGYRLERAGIMDMFP 432

Query: 352 YTRHMECGVLLVR-KPSG 368
           +T H+E   +  R +P G
Sbjct: 433 HTAHVESMAVFRRDEPRG 450


>gi|256848539|ref|ZP_05553980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256714591|gb|EEU29571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 474

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   L LA     V  +EI   +V  A  N   N++ N K    S++E    
Sbjct: 331 LIDAYAGIGTIGLALASRVHEVRGMEIIPEAVADANQNATLNNITNAKYETGSAEELLPK 390

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330
            R E               F  + VDPPR+GLD+  +  + Q  P    YISCN  SL R
Sbjct: 391 WRAE------------GLHFDALVVDPPRTGLDNKLIQQILQEKPTKFAYISCNMASLAR 438

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +L+ L  T+ ++ +   D  P T   E  V L
Sbjct: 439 NLARLVPTYRVDYIQPIDMMPQTARCEAVVKL 470


>gi|126173113|ref|YP_001049262.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS155]
 gi|167012644|sp|A3D0Y0|RUMB_SHEB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|125996318|gb|ABN60393.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS155]
          Length = 390

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV   +      L +L+CG G F L  A +   +  +EI 
Sbjct: 221 KSFFQTNPQVAAQLYQTAREWVAEFSPR---SLWDLFCGVGGFGLHCASNDITLTGIEIE 277

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     + NV+ + + S +F +                 + +   I V+PP
Sbjct: 278 AEAIACAQMSAQMMGLENVQFMALDSTDFAKGKSA-------------ADKPDLIIVNPP 324

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ +A    +  +    ILY SCNP +L +DL  +   H + ++ LFD FP++ H E 
Sbjct: 325 RRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHIQGYH-LTKVQLFDLFPHSDHFEV 383

Query: 359 GVLLVR 364
             +LV+
Sbjct: 384 LAMLVK 389


>gi|325292120|ref|YP_004277984.1| RNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325059973|gb|ADY63664.1| RNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 416

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             FTQ        M E VLA   G    + +L+CG+G F+L LAR   RV AVE     +
Sbjct: 249 GGFTQATKQAEDAMAELVLAHV-GKSKRIADLFCGSGTFALRLAR-VGRVHAVEAEDKPL 306

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +A   + AA +   +K V +  ++     RR    + +K+ D        +  DPPR+G 
Sbjct: 307 KA--LDFAARNTQGLKPVSIEKRDL---FRRPLMTSEMKNYD-------AVVFDPPRAGA 354

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +     + + A   I+ +SCNP +L RDL+IL    + + R+   DQF ++ H+E
Sbjct: 355 EVQCRELARSAVKKIVAVSCNPLTLARDLAILVEGGYRVTRVTPVDQFLWSPHVE 409


>gi|294791006|ref|ZP_06756164.1| putative tRNA (Uracil-5-)-methyltransferase [Scardovia inopinata
           F0304]
 gi|294458903|gb|EFG27256.1| putative tRNA (Uracil-5-)-methyltransferase [Scardovia inopinata
           F0304]
          Length = 448

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 16/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           + +LY G+G F+L  A  F   R+L+VE A  +V+ AR N AA  ++ +          +
Sbjct: 297 IWDLYSGSGLFTLAAATAFPQARILSVEGAPVAVKNARENSAAAGLDTIT---------S 347

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
           Q     +    L D  +   +   I +DPPRSG       ++ +     I+YISCNP SL
Sbjct: 348 QEGDVYKTLKNLSDTTLAHPQI--ILLDPPRSGAGRKVCNLLSSSQAETIIYISCNPASL 405

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD+S L    + +  +  +D +P T H+E   L+ R
Sbjct: 406 ARDISYLRQGGYELTSIHAYDIYPLTHHVETICLMSR 442


>gi|227893144|ref|ZP_04010949.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM
           16047]
 gi|227865010|gb|EEJ72431.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM
           16047]
          Length = 460

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A     V+ +E    +V+ A +N+  NH+ N   ++ S+++    
Sbjct: 317 LIDAYSGVGTLGILAADRVKHVVGIETIPEAVKDAEHNVELNHIKNADYIQGSTEKV--- 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
                    L ++         + VDPPR+GL  + +  + +  P   +YISCNP +L +
Sbjct: 374 ---------LPELQNSGVSIDALIVDPPRTGLAKSLIKTILRVKPQTFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC-GVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 425 DLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLILRK 460


>gi|330837297|ref|YP_004411938.1| (Uracil-5)-methyltransferase [Spirochaeta coccoides DSM 17374]
 gi|329749200|gb|AEC02556.1| (Uracil-5)-methyltransferase [Spirochaeta coccoides DSM 17374]
          Length = 392

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 144/351 (41%), Gaps = 49/351 (13%)

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR--IDYF-MPGSLLINALMIEM 90
           +I    P     R  F+    G +L H+  D Q +E+ R  ID     G +  ++L++E 
Sbjct: 56  EILEPSPQRVAPRCPFYDECGGCNLMHLSEDSQAEEKQRLFIDAMERTGGIPRDSLVLEP 115

Query: 91  MATIRLEPLLRAKLFQIDYLTSQS------DQAIVTLIYHRLLDDAWRECAIRLRDALHA 144
            A+           F +D    Q+       +++V L    +L          L + L  
Sbjct: 116 PASATGWEYRSRSAFHVDERLRQAGFLGRRSRSLVPLPSCPVL-------VSELSEVLAG 168

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINV 196
           R  ++    R  K  +     +  +     G+  +   ++          F Q N  +  
Sbjct: 169 RDERLWKAARKVKESLARISVFAGDADISYGKIPVVATVDGIPFHVSAQVFFQSNRLLMP 228

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            ++ +VL+  KG +  +++LY G G FS  L R    V+AVE     +E AR N      
Sbjct: 229 SLIRFVLSHVKGER--VMDLYAGVGVFSAFLEREGHTVIAVEKEPDCLELARLNAPRTRF 286

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           +       +++++  +M               S +  T+ VDPPR+GL  +   ++ ++ 
Sbjct: 287 HTA-----ATEKWHPSM---------------SEKVDTVVVDPPRTGLAPSVPALIASWK 326

Query: 317 --HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
              ++Y+SC+  +L RDL   LS  ++     +FD +P T H E  V+L R
Sbjct: 327 PERVIYVSCDSVTLARDLRKFLSEGYSPTIAQVFDLYPQTSHYEAAVVLDR 377


>gi|113954400|ref|YP_730547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CC9311]
 gi|113881751|gb|ABI46709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CC9311]
          Length = 464

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 93/210 (44%), Gaps = 34/210 (16%)

Query: 172 TVAGRTLIYRQIEN--------SFTQPNAG----INVHMLEWVLAATKGIQGDLLELYCG 219
           T+AGR  I  +  N        +F Q N      I + +  W+L   +G    L++ YCG
Sbjct: 265 TLAGRDCISERFCNLQLLLGTTTFFQINTDRAEQIVMVLRNWLL--QRGDCKRLIDAYCG 322

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL +A     V+ +EI   SV+ AR N A N + + K        F          
Sbjct: 323 IGTISLPVAAAGIGVVGLEINPASVQQARQNAALNGLTDAK--------FEAGDVASLLS 374

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-- 335
           + L D D        + VDPPR GL    +  +   P   + Y+SC+  +L RDL  L  
Sbjct: 375 DYLPDHD-------ALVVDPPRKGLASDVLDAILNCPPKRLAYLSCDSATLARDLKRLVS 427

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  + I+R+   D FP T H+EC VL+ R
Sbjct: 428 DNGPYAIDRIQPVDFFPQTTHLECLVLMER 457


>gi|50401526|sp|Q7W676|RUMA_BORPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 466

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 38/261 (14%)

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170
            D+AIV ++ H L         +R   A H  ++ +Q   +   T   L+R++ D     
Sbjct: 190 GDEAIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYT 247

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLAR 229
           L   G  + YR  +  FTQ N  IN  M+   L       Q  + +L+CG GNF+L LA 
Sbjct: 248 LPEFGLRMPYRPTD--FTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLAT 305

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDI 287
                + VE +K   + A +  AA H                 +     F  L   ++D+
Sbjct: 306 QGREAVGVEGSKALTDRA-HEAAARH----------------GLGERTRFATLNLFEVDV 348

Query: 288 HSYR----FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--S 336
              R    F  + +DPPR G       +    P      I+Y+SCNP +L RD +I+   
Sbjct: 349 QWLRGLGYFDRMLIDPPREGAQAVVQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHE 408

Query: 337 TTHTIERLALFDQFPYTRHME 357
             + +    + + FP+T H+E
Sbjct: 409 GGYALRSAGVINMFPHTGHVE 429


>gi|171779969|ref|ZP_02920873.1| hypothetical protein STRINF_01756 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281317|gb|EDT46752.1| hypothetical protein STRINF_01756 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 454

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A++   V  VE+ + +V+ A+ N A N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVKDAKRNAALNGITNAHYVADSAEHAMAT 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328
             ++              +   I VDPPR GL +    A+V M      + YISCNP ++
Sbjct: 368 WSKD------------GIKPSVILVDPPRKGLTENFIKASVAMQPE--KVTYISCNPATM 413

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +     + ++++   D FP T H+E  VL+ R
Sbjct: 414 ARDIKLYQELGYKLQKVQPVDLFPNTHHVETVVLMSR 450


>gi|116617299|ref|YP_817670.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096146|gb|ABJ61297.1| 23S rRNA m(5)U-1939 methyltransferase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 496

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 158/384 (41%), Gaps = 47/384 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D L Q +  FQ            I    P  YR +A+F +   GD L   M
Sbjct: 130 YPAQLRFKKDVLVQSLEKFQPKGWSNYDIRDTIGMDHPYEYRNKAQFPVRKIGDKLSVGM 189

Query: 63  FDQQTKERMRIDYF---MPGSL----LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           + + + + + +       P ++     +  L+ ++  +I  E   R  +  I    SQ+ 
Sbjct: 190 YKRGSHDLVDLPVVHTQTPATMKVMRTVRELLDKLSVSIYNEDKNRGTVKTIVARVSQTT 249

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI------GRAN-----KTKICLDR 164
              V L +    D    + A  L +A++    ++  I      GR +     +T     +
Sbjct: 250 SE-VQLTFITNTDGFPGDTA--LIEAINQALPEVTGIFQNYNPGRTSLVWGEETLKLWGK 306

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY++E+  V G+T  ++    +F Q N      +    LAA      D L++ Y G G  
Sbjct: 307 DYIEEK--VLGKT--FQLSPRAFMQLNHTQMSVVYNQALAALDLTHADKLVDAYAGVGTI 362

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +EI   +V+ A  N   NH++N      ++++     + E       
Sbjct: 363 GLSLADKAGEVRGMEIIPEAVDDANQNATLNHISNAHYEVGTAEKLFPKWQSE------- 415

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTI 341
                 +    + VDPPR+GLD A    +++  P   +YISCN  +L RDL  LS  + +
Sbjct: 416 -----GWIADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLSKAYQV 470

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           + +   D FP T   E  V L ++
Sbjct: 471 DYIQSIDMFPQTARWEGVVKLTKR 494


>gi|317495762|ref|ZP_07954125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum
           M424]
 gi|316913939|gb|EFV35422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum
           M424]
          Length = 537

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL  A+   +V  +EI + +V  A  N   N++ N + +   S++    
Sbjct: 302 IIDAYCGIGTISLFAAQKVKKVYGIEIVEAAVLDALENAKNNNITNAEFLLGKSEDI--- 358

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    +K + + + +   + VDPPR G  +  +  + A     ++Y+SCNP +L R
Sbjct: 359 ---------IKKLILQNIKLDAVIVDPPRKGCGENFLRDLAAMDIEKVVYVSCNPATLAR 409

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ I+    + +  +   D FP T H+E   LL +
Sbjct: 410 DMGIMRRLGYKLGAVQPVDMFPGTYHVETVALLSK 444


>gi|315037858|ref|YP_004031426.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325956332|ref|YP_004291744.1| RNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|312275991|gb|ADQ58631.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325332897|gb|ADZ06805.1| RNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|327183151|gb|AEA31598.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1118]
          Length = 459

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ ++++    
Sbjct: 316 LIDAYSGVGTLGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGATEKV--- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
                    L ++         + VDPPR+GL  + +  + +  P   +YISCNP +L +
Sbjct: 373 ---------LPELQNSGVSIDALIVDPPRTGLAKSLIKTILRVKPETFVYISCNPSTLAQ 423

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC-GVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 424 DLVLLSEAYDVRLIQNVDMLPQTPRCEAIAKLVLRK 459


>gi|81299052|ref|YP_399260.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus
           elongatus PCC 7942]
 gi|81167933|gb|ABB56273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus
           elongatus PCC 7942]
          Length = 455

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 19/154 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L +LYCG G  +L LA     VL +EI   SV  A+ N   N ++NV+  R  + E   A
Sbjct: 313 LFDLYCGVGTLTLPLASEVGSVLGLEILPESVVQAQQNADRNGISNVEF-RAGAVEILLA 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH-ILYISCNPDSLCR 330
              E                  + +DPPR G + A + +++   P  I Y+SCNP +L R
Sbjct: 372 QIPESP--------------DAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLAR 417

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLL 362
           DL  L        L +   D FP T H+E   LL
Sbjct: 418 DLQALCAGDRYRLLLVQPLDFFPQTAHVETVALL 451


>gi|288941731|ref|YP_003443971.1| TrmA family RNA methyltransferase [Allochromatium vinosum DSM 180]
 gi|288897103|gb|ADC62939.1| RNA methyltransferase, TrmA family [Allochromatium vinosum DSM 180]
          Length = 440

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 19/188 (10%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           + + FTQ N  +N  M++  L        D +L+L+CG GNF+L LAR    V+ VE   
Sbjct: 266 LPSDFTQVNLELNRRMVDQALDLLAPESDDAVLDLFCGLGNFTLPLARRSAEVVGVEGDA 325

Query: 242 PSVEAARYNIAANHVNNVK--IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             VE A  N   N + NV+  +  + ++  T A   ++             RF    +DP
Sbjct: 326 GLVERACANAERNGLTNVQFHVADLQAELSTAAPWTQQ-------------RFTKALIDP 372

Query: 300 PRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHM 356
           PRSG  +    + +     ++Y+SC P +L RD   L     + +    + D FP+T H+
Sbjct: 373 PRSGAWEVLDWLPRLGVERLVYVSCYPTTLARDADRLVNELGYRLRAAGVMDMFPHTSHV 432

Query: 357 ECGVLLVR 364
           E   L  R
Sbjct: 433 ESMALFER 440


>gi|291436762|ref|ZP_06576152.1| RNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291339657|gb|EFE66613.1| RNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 448

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER    GRT  +R     F Q +      ++  V+      +GD  L+LYCG G 
Sbjct: 256 RPFVRERAD--GRT--HRVGGGGFWQVHPQAADTLVTAVMQGLLPRKGDTALDLYCGVGL 311

Query: 223 FSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA R  D+  VL +E  + +VE AR+N+A     +   VR+   +    + R    
Sbjct: 312 FAGALADRVGDQGAVLGIESGRRAVEDARHNLA-----DFPRVRIEQGKVESVLPR---- 362

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
             + ++D+       + +DPPR+G    TV  + +     I Y++C+P +L RDL+    
Sbjct: 363 TGITEVDL-------VVLDPPRAGAGRKTVEHLSSLGARRIAYVACDPAALARDLAYFRD 415

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + +  L +FD FP T H+EC  +L
Sbjct: 416 GGYRVRTLRVFDLFPMTHHVECVAIL 441


>gi|104773677|ref|YP_618657.1| methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103422758|emb|CAI97391.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 460

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V  A++N+  NHV N + +  S       
Sbjct: 317 LIDAYSGVGTLGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLHGSV------ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
              E+   RLK+          + VDPPR+GL  + +  +++  P   +YISCNP +L +
Sbjct: 371 ---EKLLPRLKE---DGLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           DL +L   + +  +   D  P T   EC
Sbjct: 425 DLVLLGEAYDVRVIENVDMLPQTPRCEC 452


>gi|56751281|ref|YP_171982.1| RNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56686240|dbj|BAD79462.1| probable RNA methyltransferase [Synechococcus elongatus PCC 6301]
          Length = 455

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 70/154 (45%), Gaps = 19/154 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L +LYCG G  +L LA     VL +EI   SV  A+ N   N ++NV+  R  + E   A
Sbjct: 313 LFDLYCGVGTLTLPLASEVGSVLGLEILPESVVQAQQNADRNGISNVEF-RAGAVEILLA 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH-ILYISCNPDSLCR 330
              E                  + +DPPR G + A + +++   P  I Y+SCNP +L R
Sbjct: 372 QIPESP--------------DAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLAR 417

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLL 362
           DL  L        L +   D FP T H+E   LL
Sbjct: 418 DLQALCAGDRYRLLLVQPLDFFPQTAHVETVALL 451


>gi|298492165|ref|YP_003722342.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298234083|gb|ADI65219.1| RNA methyltransferase, TrmA family ['Nostoc azollae' 0708]
          Length = 455

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 21/169 (12%)

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V+ +    QG+  L++ YCG G  +L LA+   +V+ +E+   +VE A +N   N +NNV
Sbjct: 300 VIQSELNFQGNEILVDAYCGIGTLTLPLAKQSHQVIGLEVQSAAVEQAIFNAQHNGINNV 359

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH- 317
                      Q    E+    L  I         + +DPPR G +   +  ++   P  
Sbjct: 360 TF---------QVGAVEKNLPNLGIIP------DIVLLDPPRKGCEANVIKSLLSLKPSR 404

Query: 318 ILYISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVR 364
           I+Y++C   +L RDL +L     + + R+   D FP T H+E    LVR
Sbjct: 405 IVYVTCKVATLSRDLKLLCEHGLYKLTRVQPADFFPQTAHVESAAFLVR 453


>gi|255305404|ref|ZP_05349576.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           ATCC 43255]
          Length = 451

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           + ++ ++   RDY+ E +      L ++    SF Q N        E + +  +   GD 
Sbjct: 255 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 306

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +
Sbjct: 307 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 366

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             + ++ + +                I VDPPR G+    +  +  +    I+YISCNP 
Sbjct: 367 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 411

Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SL  DL       + I+ +   D FP T H+E   LL RK
Sbjct: 412 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHVETVALLRRK 451


>gi|329940064|ref|ZP_08289346.1| tRNA methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329300890|gb|EGG44786.1| tRNA methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 433

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 23/160 (14%)

Query: 210 QGDL-LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +GD  L+LYCG G F+  LA        VL +E  K +VE AR+N+A         VR+ 
Sbjct: 283 KGDTALDLYCGVGLFAGALADRVGEKGAVLGIESGKRAVEDARHNLA-----EFDRVRIE 337

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323
             +   A+ R      + + D+       + +DPPR+G    TV  +       I Y++C
Sbjct: 338 QGKVEAALPR----TGITEADL-------VVLDPPRAGAGRKTVAHLTTLGARRIAYVAC 386

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           +P +L RDL+      + +  L  FD FP T H+EC  +L
Sbjct: 387 DPAALARDLAYFREGGYRVRSLRAFDLFPMTHHVECVAVL 426


>gi|257875474|ref|ZP_05655127.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC20]
 gi|257809640|gb|EEV38460.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC20]
          Length = 458

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L +A +   V  ++I   ++E A+ N       N      +++E    
Sbjct: 316 VVDAYCGVGTIGLSVAPYAKEVRGMDIIPQAIENAQENARRIGAQNTHYETGTTEELL-- 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
               + FN         ++  +I VDPPR+GLD+  +  +   P   ++YISCN  +L R
Sbjct: 374 ---PKWFN-------EGFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLAR 423

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+    +E L   D FP T   E  V L RK
Sbjct: 424 DLVQLAKVFHVEYLQSVDMFPQTARCEVVVKLTRK 458


>gi|257454008|ref|ZP_05619282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enhydrobacter
           aerosaccus SK60]
 gi|257448486|gb|EEV23455.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enhydrobacter
           aerosaccus SK60]
          Length = 503

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 23/180 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKP 242
           FTQ N  +N  M +  +   +   G+ +L+L+CG GNFSL LAR       V+ VE +  
Sbjct: 332 FTQVNLSVNRKMTKLAIDLLELKPGERVLDLFCGLGNFSLPLARQVGETGFVIGVEGSSE 391

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVDPP 300
             + A+ N  AN +++          F Q +         KD     +  +   + +DPP
Sbjct: 392 MTQRAKMNATANGLHHTDF-------FAQDL--------TKDFSAEPWVGQVDALLIDPP 436

Query: 301 RSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMEC 358
           RSG  +    + +     I+Y+SCNP +L RD ++ L   + +    + D FP+T H+E 
Sbjct: 437 RSGALEVMQYLDKFNAKRIVYVSCNPITLARDTAVLLDKGYKLTHAGVMDMFPHTGHVES 496


>gi|329121754|ref|ZP_08250371.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
 gi|327468224|gb|EGF13710.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
          Length = 648

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 17/161 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + GD  +++ YCG G  SL LA+    V+ +EI K ++E A+ N   N + NV+      
Sbjct: 303 LSGDETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADV 362

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCN 324
            ++   + ++              + + + +DP R+G D+  +  + +  P  I+Y+SCN
Sbjct: 363 AKYLPELAKK------------GIKAEVVVLDPVRAGCDEKVIEAIGKINPERIVYVSCN 410

Query: 325 PDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             +  RD+  LS   + + ++   D FP T H+E   LL +
Sbjct: 411 VATQARDIERLSKKGYKLIKIQPIDMFPQTTHVETVALLYK 451


>gi|317482482|ref|ZP_07941499.1| (uracil-5)-methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916142|gb|EFV37547.1| (uracil-5)-methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 422

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287

Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   L  R
Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422


>gi|291516726|emb|CBK70342.1| 23S rRNA m(5)U-1939 methyltransferase [Bifidobacterium longum
           subsp. longum F8]
          Length = 423

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 229 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 288

Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 289 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 335

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 336 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 395

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   L  R
Sbjct: 396 EGYELKDIRAFDIYPMTHHVETVALFTR 423


>gi|257865847|ref|ZP_05645500.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC30]
 gi|257872181|ref|ZP_05651834.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC10]
 gi|257799781|gb|EEV28833.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC30]
 gi|257806345|gb|EEV35167.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC10]
          Length = 458

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L +A +   V  ++I   ++E A+ N       N      +++E    
Sbjct: 316 VVDAYCGVGTIGLSVAPYAKEVRGMDIIPQAIENAQENARRIGAQNTHYETGTAEELL-- 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
               + FN         ++  +I VDPPR+GLD+  +  +   P   ++YISCN  +L R
Sbjct: 374 ---PKWFN-------EGFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLAR 423

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+    +E L   D FP T   E  V L RK
Sbjct: 424 DLVQLAKVFHVEYLQSVDMFPQTARCEVVVKLTRK 458


>gi|257094638|ref|YP_003168279.1| TrmA family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047162|gb|ACV36350.1| RNA methyltransferase, TrmA family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 437

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 115/263 (43%), Gaps = 20/263 (7%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +R +L QI+    +   A+V  I   L  DA  E  +R     H   + +Q  G A   +
Sbjct: 177 IRDRLPQIEVAVGERMTALVLRILESL--DAADEVLLRDFADRHQVVFYLQPQGPATAYR 234

Query: 160 IC-LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
            C +D   +   L        +   E  FTQ N  IN  ++   L+      G+ + +++
Sbjct: 235 FCPVDGPRLSYLLPDFAVEHFFSPTE--FTQVNHAINRVLVRRALSLLDPRPGERIADMF 292

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG GNF+L +AR    V+ +E +   V  A  N  AN +++    R+++  FT       
Sbjct: 293 CGLGNFTLPIARAGASVVGIEGSAELVGRAAENATANGLHDRVEYRVANL-FTATTESIG 351

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILS 336
                        RF  + +DPPR G  +    +    P  I+YISC+P +L RD +IL 
Sbjct: 352 ALG----------RFDKMLIDPPREGALELVKSLGADGPGRIVYISCSPATLARDAAILV 401

Query: 337 T--THTIERLALFDQFPYTRHME 357
           +   + +    + + FP T H+E
Sbjct: 402 SQKGYRLRGAGVVNMFPNTSHVE 424


>gi|332075642|gb|EGI86110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA17545]
          Length = 543

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   NH++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNTHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|227547632|ref|ZP_03977681.1| SAM-dependent methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227211887|gb|EEI79783.1| SAM-dependent methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 423

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 229 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 288

Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 289 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 335

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 336 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 395

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   L  R
Sbjct: 396 EGYELKDIRAFDIYPMTHHVETVALFTR 423


>gi|227432946|ref|ZP_03914888.1| tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351292|gb|EEJ41576.1| tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 498

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 19/205 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           +DY++E+  V G+T  ++    +F Q N      +    LAA      D L++ Y G G 
Sbjct: 308 KDYIEEK--VLGKT--FQLSPRAFMQLNHTQMSVVYNQALAALDLTHADKLVDAYAGVGT 363

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA     V  +EI   +V+ A  N   NH++N      ++++     + E      
Sbjct: 364 IGLSLADKAGEVRGMEIIPEAVDDANQNATLNHISNAHYEVGTAEKLFPKWQSE------ 417

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340
                  +    + VDPPR+GLD A    +++  P   +YISCN  +L RDL  LS  + 
Sbjct: 418 ------GWIADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLSKAYK 471

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++ +   D FP T   E  V L ++
Sbjct: 472 VDYIQSIDMFPQTARWEGVVKLTKR 496


>gi|256842705|ref|ZP_05548193.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 125-2-CHN]
 gi|293380255|ref|ZP_06626333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 214-1]
 gi|256614125|gb|EEU19326.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 125-2-CHN]
 gi|290923164|gb|EFE00089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 214-1]
          Length = 462

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S ++    
Sbjct: 317 LIDAYSGVGTLGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKI--- 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                    L ++         + VDPPR+GL  + +  +++  P   +YISCNP +L +
Sbjct: 374 ---------LPELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 425 DLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLV 457


>gi|239928435|ref|ZP_04685388.1| RNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 432

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R +V ER    GRT  +R     F Q +      ++  V+      +GD  L+LYCG G 
Sbjct: 240 RPFVRERAD--GRT--HRVGGGGFWQVHPQAADTLVTAVMQGLLPRKGDTALDLYCGVGL 295

Query: 223 FSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA R  D+  VL +E  + +VE AR+N+A     +   VR+   +    + R    
Sbjct: 296 FAGALADRVGDQGAVLGIESGRRAVEDARHNLA-----DFPRVRIEQGKVESVLPR---- 346

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
             + ++D+       + +DPPR+G    TV  + +     I Y++C+P +L RDL+    
Sbjct: 347 TGITEVDL-------VVLDPPRAGAGRKTVEHLSSLGARRIAYVACDPAALARDLAYFRD 399

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + +  L +FD FP T H+EC  +L
Sbjct: 400 GGYRVRTLRVFDLFPMTHHVECVAIL 425


>gi|225388129|ref|ZP_03757853.1| hypothetical protein CLOSTASPAR_01864 [Clostridium asparagiforme
           DSM 15981]
 gi|225045790|gb|EEG56036.1| hypothetical protein CLOSTASPAR_01864 [Clostridium asparagiforme
           DSM 15981]
          Length = 452

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 21/191 (10%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237
           +R    SF Q N  +   +L        G+ G   +L+ YCG G   L+ +R    V+ V
Sbjct: 267 FRISSKSFYQVNP-VQTEVLYGKALELAGLTGKETVLDAYCGIGTIGLIASRKASSVIGV 325

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+ + +V+ A  N   N + N K     + +F            L D+     +   + +
Sbjct: 326 ELNRDAVKDAVNNAKINGITNAKFYCNDAGKF------------LVDMAERGDKVDLVIM 373

Query: 298 DPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYT 353
           DPPRSG  +  +  V       ++Y+SCNP++L RDL ++       +E   + D F  T
Sbjct: 374 DPPRSGSTEEFMESVARMGVEKVVYVSCNPETLGRDLRVMKKLGYGAVEGWGV-DMFAGT 432

Query: 354 RHMECGVLLVR 364
           RH+E  V+++R
Sbjct: 433 RHVES-VIMMR 442


>gi|218440243|ref|YP_002378572.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7424]
 gi|218172971|gb|ACK71704.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7424]
          Length = 460

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 24/173 (13%)

Query: 194 INVHMLEWVLAA---TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           IN    E +L     T  ++G+  L++ YCG G F+L LA+   R + +E+ + S   A+
Sbjct: 290 INTQAAEILLGVIFDTLELKGNETLIDAYCGIGTFTLPLAQRVGRAIGIEVYRSSTIQAQ 349

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   N + NV  +  + +          + + + DI         I +DPPR G D   
Sbjct: 350 ENAKLNRLLNVSFIPGAVETVLP------QLDLIPDI---------ILLDPPRKGCDKTV 394

Query: 309 V-GMVQAYP-HILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357
           +  +++  P  ++YISC P +L RDL +L +  ++ +  +   D FP T H+E
Sbjct: 395 IETLLKLKPSRLVYISCQPATLARDLKLLCSDGSYNLTGVQPVDFFPQTSHVE 447


>gi|262038996|ref|ZP_06012331.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia
           goodfellowii F0264]
 gi|261746988|gb|EEY34492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia
           goodfellowii F0264]
          Length = 483

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G    ++++   +V  +E+ + +V+ A      N++ N + +          
Sbjct: 338 VFDLFSGTGTIGQIVSKKAKQVYGIELIEEAVKKANETAKFNNIKNAEFIAGDV------ 391

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                 F +L +++    +   I +DPPR G+ + T+  +  Y   +I+Y+SCNP +L +
Sbjct: 392 ------FEKLDELEERDVKPDIIILDPPRPGVGEKTITKLLKYNVSNIIYVSCNPKTLAQ 445

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL+I  +  + + +    D FP T H+E   LLV+
Sbjct: 446 DLAIFHNNGYRLVKSCPVDMFPQTPHVEVVNLLVK 480


>gi|257783863|ref|YP_003179080.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469]
 gi|257472370|gb|ACV50489.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469]
          Length = 415

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 22/161 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI------AANHVNNVKIVRMSS 266
           +L+ YCG G   L LA H      V +    V+    NI      A N+    + +   +
Sbjct: 266 ILDAYCGTGTIGLCLA-HVAEAQGVNLLLTGVDQVENNIQMARRNARNNKLEAEFICDDA 324

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
             + QA+ ++ +             F  I +DPPR+G   A +      A   I+Y+SCN
Sbjct: 325 TRYMQALAKDGQ------------NFDVIILDPPRAGSTPAFLKATAQLAQKKIVYVSCN 372

Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +  RDL +L  +   IER+   D FP+T+H+EC V+L R
Sbjct: 373 VVTQARDLKVLLDSGFAIERVTPVDMFPHTKHVECVVVLSR 413


>gi|297485088|ref|XP_002694704.1| PREDICTED: HpaII tiny fragments locus 9C [Bos taurus]
 gi|296478319|gb|DAA20434.1| HpaII tiny fragments locus 9C [Bos taurus]
          Length = 610

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 23/164 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ VE+++ +VE AR N   N ++NV+     ++E   A
Sbjct: 421 VLDVCCGTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRAEELVPA 480

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    V  V+   ++   LY+SCNP +  
Sbjct: 481 L-----VSRLASQQL------VAILDPPRAGLHSKAVLAVRRAENVRRLLYVSCNPRAAM 529

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T     +    D FP T H E  +L  R
Sbjct: 530 GNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTLHCEMLILFER 573


>gi|322689432|ref|YP_004209166.1| methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460768|dbj|BAJ71388.1| putative methyltransferase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 422

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287

Query: 224 SLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   L  R
Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422


>gi|299782720|gb|ADJ40718.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
           fermentum CECT 5716]
          Length = 312

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 19/212 (8%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213
            ++T +   +DY+ E L      L +R    SF Q N      + E    A    + D L
Sbjct: 113 GDETTLLYGQDYITESL----MGLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTL 168

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ Y G G   L LA    +V+ +E    +V+ A  N   N V N +     ++E     
Sbjct: 169 IDAYAGIGTIGLSLANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKW 228

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRD 331
           R + +             F  + VDPPR+GLD+A +  + Q  P    Y+SCN  +L R+
Sbjct: 229 RSQGQ------------HFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARN 276

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           L+ L  T+ +  +   D  P T   E  V LV
Sbjct: 277 LARLVPTYRVAYIQPVDMLPQTPRCEAVVKLV 308


>gi|298346906|ref|YP_003719593.1| TrmA family tRNA (uracil-5-)-methyltransferase [Mobiluncus curtisii
           ATCC 43063]
 gi|298236967|gb|ADI68099.1| TrmA family tRNA (uracil-5-)-methyltransferase [Mobiluncus curtisii
           ATCC 43063]
          Length = 504

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 94/205 (45%), Gaps = 16/205 (7%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
           V E + V   T  YR    SF Q +      +   +  A   I+G +  ELY G+G FSL
Sbjct: 216 VRETVHVDDLTFTYRIFSGSFWQTDRRAPAILAAALRDALGQIEGFEAWELYSGSGLFSL 275

Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            LA+      R+  VE   P+ ++A YN+A    + V++ R    + +  + R      +
Sbjct: 276 FLAQGLGAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRR---GDVSPQLLRSLPMGEM 332

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYI-SCNPDSLCRDLSIL-STTH 339
                   +   +  DPPR GL  A    + A +P ++ + SC+P S  RDL  +    +
Sbjct: 333 VS------QGTLVVADPPRLGLGKAVARAICAQHPDLVALFSCDPVSCARDLETMRQLGY 386

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            ++   +FD FPYT H+E   LL +
Sbjct: 387 RVKTWRVFDLFPYTSHVETVALLSK 411


>gi|297461681|ref|XP_002701792.1| PREDICTED: HpaII tiny fragments locus 9C [Bos taurus]
          Length = 606

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 23/164 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ VE+++ +VE AR N   N ++NV+     ++E   A
Sbjct: 417 VLDVCCGTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRAEELVPA 476

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    V  V+   ++   LY+SCNP +  
Sbjct: 477 L-----VSRLASQQL------VAILDPPRAGLHSKAVLAVRRAENVRRLLYVSCNPRAAM 525

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T     +    D FP T H E  +L  R
Sbjct: 526 GNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTLHCEMLILFER 569


>gi|329930050|ref|ZP_08283675.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
           HGF5]
 gi|328935449|gb|EGG31921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
           HGF5]
          Length = 532

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 19/184 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N    V + E V AA  G+ G   +++ YCG G   L LA +   V  +E    +
Sbjct: 360 AFFQLNPQQTVKLYESVRAAA-GLTGKETVIDAYCGTGTIGLWLAPYAKEVRGIETIPEA 418

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A+ N   N   N       ++E      +E              +   I  DPPR+G
Sbjct: 419 VEDAKANAQRNGRANASFHVGQAEELLPRWVKE------------GMKPDVIIADPPRTG 466

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360
           LD   +  V +  P   +Y+SCNP +L +D  + L   + +E     D FP T H+E  V
Sbjct: 467 LDPRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDGGYELEWAQPVDMFPQTSHVEA-V 525

Query: 361 LLVR 364
           LL++
Sbjct: 526 LLMK 529


>gi|322691399|ref|YP_004220969.1| methyltransferase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456255|dbj|BAJ66877.1| putative methyltransferase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 422

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287

Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   L  R
Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422


>gi|326693283|ref|ZP_08230288.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc argentinum KCTC
           3773]
          Length = 458

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 25/183 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N      + +  LAA K        +++ Y G G   + +A    +VL VE+  
Sbjct: 284 NSFYQVNPQTTEVLYD--LAAQKAQLQPTDTVIDAYSGIGTIGITVANRVKQVLGVEVVP 341

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A++N+  N + N   +   + E            + K  +    + + +FVDPPR
Sbjct: 342 GAVADAQHNMRLNGIQNATYLLADAPE------------KFKIWEAAQLQPEVVFVDPPR 389

Query: 302 SGLDD----ATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIE-RLALFDQFPYTRH 355
            GL      ATV M      ++YISCNP +L RD + I+   + IE  +   DQFP T H
Sbjct: 390 RGLTSELIQATVDM--GPERLVYISCNPVTLARDAAEIVQKGYQIEGPVQPVDQFPQTSH 447

Query: 356 MEC 358
           +E 
Sbjct: 448 VES 450


>gi|320527423|ref|ZP_08028604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
 gi|320132136|gb|EFW24685.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
          Length = 377

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 169/393 (43%), Gaps = 58/393 (14%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEPIHYRMR--AEFHIWHDGDD 57
            G   ID  YE+QL  K + +R++     + P L +   +P HYR +  A F      + 
Sbjct: 11  GGCAYIDVPYEEQLKMKREEMRKIFRTKAIEPVLGM--KDPYHYRHKIYASFARDKKTNR 68

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQ 116
           +Y  M+++ +  ++  +      L+ + L  E++ TI +L   +R +++  D        
Sbjct: 69  IYAGMYEENSHRKVPSEM----CLIQHTLANEILTTICKLAESMRIEIYDEDSGRGTLRH 124

Query: 117 AIVTLIYHRLLDDAWRECAIRLR---------DALHARKYQIQLI----GRANKTKICLD 163
           A + +   +  +D   +  I  +         +AL  +  QI+ I     RA+ T + L 
Sbjct: 125 AYIRI--SKATNDVLLDIVIGSKGLPSSKNFVNALVKKFPQIKTIILNFNRAH-TSMILG 181

Query: 164 RD--------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-L 214
           +D        Y+ +R+      L +R    SF Q N      +    L+  K    D+ L
Sbjct: 182 KDERVLYGPGYITDRIG----GLEFRISSKSFYQVNPEQTEVLYRTALSLVKIKDTDVVL 237

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +  CG G  SL+ A+    V+ VEI   ++  A+ N   N + N +     + EF Q M 
Sbjct: 238 DACCGIGTISLLAAQSAKHVIGVEINPQAIRDAKNNAKHNKLLNTEFYAADATEFIQRM- 296

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDL 332
                         + +   + +DPPRSG+    +  + Q  P  ++YISCNP +   D+
Sbjct: 297 --------------NIKTDVVILDPPRSGMTLPFMHKLAQLSPDRVVYISCNPYTQVTDI 342

Query: 333 SILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             L    + I+++   D F +T H+E  VLL +
Sbjct: 343 EPLKKAGYQIKKIVPVDLFGFTPHVETMVLLSK 375


>gi|154488844|ref|ZP_02029693.1| hypothetical protein BIFADO_02152 [Bifidobacterium adolescentis
           L2-32]
 gi|154082981|gb|EDN82026.1| hypothetical protein BIFADO_02152 [Bifidobacterium adolescentis
           L2-32]
          Length = 421

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 26/211 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           E++TV GR   Y      F Q     P A +  H++  V     G     L +LY G+G 
Sbjct: 224 EKVTVCGREFEYGVDAGGFWQMHRHAPIA-LTGHVMSLVHGELDGAASACLWDLYSGSGL 282

Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+L LA       R+L+VE  K +V+ A+ N+ A H+ NV   R+     T A  R    
Sbjct: 283 FTLPLATLSAGRTRMLSVEGGKTAVKHAQRNLRAIHLGNVD-ARVGDVAKTLANVR---- 337

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
           N L   DI       + +DPPR+G        +       ++YI+C+P SL RD + L++
Sbjct: 338 NDLAKPDI-------VVLDPPRAGARAKVCRQIAESGARSVVYIACDPASLARDTATLAS 390

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKPS 367
             + +  +  FD +P T H+E  V L RK +
Sbjct: 391 LGYDLADIRAFDIYPTTHHVET-VALFRKAT 420


>gi|124266449|ref|YP_001020453.1| 23S rRNA 5-methyluridine methyltransferase [Methylibium
           petroleiphilum PM1]
 gi|124259224|gb|ABM94218.1| putative 23S rRNA (uracil-5-)-methyltransferase [Methylibium
           petroleiphilum PM1]
          Length = 454

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 124/288 (43%), Gaps = 38/288 (13%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR--DALHARKYQIQLIGRANKT 158
           R +L QI+    ++   +VT +  R L+    +   RLR   A H  ++ +Q  G     
Sbjct: 183 RDRLPQIEVAIGEAPDGLVTALVLRHLEPLSADDLQRLRAFGAEHGVQWWLQPKGPDTVQ 242

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK--GIQGD--LL 214
           ++      +   L   G  + ++  +  FTQ N  IN  +   V+ A +   +QGD  ++
Sbjct: 243 RLDDGGPQLAYTLPEYGVVMPFKPTD--FTQVNHAINRAL---VVRALRLLAVQGDERVI 297

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + +CG GNF+L LA     VL +E ++  V  +R N A N         +S K    A  
Sbjct: 298 DWFCGLGNFTLPLATQAREVLGIEGSEALVARSRDNAALNG--------LSHKTRFDA-- 347

Query: 275 REREFNRLKDIDIHSYRFKTIF-VDPPRSG---LDDATVGMVQ---------AYPHILYI 321
             R    L   D+ +Y   T + VDPPR G   L  A    VQ             I+Y+
Sbjct: 348 --RNLFELLPADLVAYGSATKWLVDPPREGAFALAKAVADAVQDPGQAPGWVPPARIVYV 405

Query: 322 SCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           SCNP +L RD  +L     +   +    + FP+T H+E   +  R  S
Sbjct: 406 SCNPATLARDAGLLVHQAGYRCVQAGAVNMFPHTAHVESIAVFDRNAS 453


>gi|311977789|ref|YP_003986909.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus]
 gi|82000203|sp|Q5UQK3|YR405_MIMIV RecName: Full=Putative RNA methyltransferase R405
 gi|55417024|gb|AAV50674.1| tRNA (Uracil-5-)-methyltransferase [Acanthamoeba polyphaga
           mimivirus]
 gi|308204808|gb|ADO18609.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus]
          Length = 389

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 35/222 (15%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA----GINVHMLEWVLAATKGIQGDLL 214
           KI    +Y+ E+L       I++  + SF Q N      +   +LE  +   K    D+L
Sbjct: 181 KIVKGHNYIHEKL----DDYIFKITDESFFQVNTLATEVLYNKVLELTMKYIKPTGQDIL 236

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV-----RMSSKE 268
            +L CG G   + L++ F +V  ++I + S+  A +N   N++ N++ +      +  K 
Sbjct: 237 FDLCCGTGTIGIYLSKIFTKVFGIDIKQSSIIDANHNKLLNNIPNIEFICNPIENVLEKL 296

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIF--VDPPRSGLDDATVGMVQAYP---HILYISC 323
            ++ + +  +               T F  VDPPR+G+       +   P   +++Y+SC
Sbjct: 297 ISECLEKNPD--------------STFFAVVDPPRTGMHGGVQNTINNCPNLEYLIYVSC 342

Query: 324 NPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           N  +  RD+ IL      IE + L D FP+T H E  V+L +
Sbjct: 343 NVVTFKRDMEILGKQFEAIETICL-DLFPHTPHCELIVVLKK 383


>gi|33597587|ref|NP_885230.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella
           parapertussis 12822]
 gi|33574015|emb|CAE38338.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 484

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 38/261 (14%)

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170
            D+AIV ++ H L         +R   A H  ++ +Q   +   T   L+R++ D     
Sbjct: 208 GDEAIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYT 265

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLAR 229
           L   G  + YR  +  FTQ N  IN  M+   L       Q  + +L+CG GNF+L LA 
Sbjct: 266 LPEFGLRMPYRPTD--FTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLAT 323

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDI 287
                + VE +K   + A +  AA H                 +     F  L   ++D+
Sbjct: 324 QGREAVGVEGSKALTDRA-HEAAARH----------------GLGERTRFATLNLFEVDV 366

Query: 288 HSYR----FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--S 336
              R    F  + +DPPR G       +    P      I+Y+SCNP +L RD +I+   
Sbjct: 367 QWLRGLGYFDRMLIDPPREGAQAVVQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHE 426

Query: 337 TTHTIERLALFDQFPYTRHME 357
             + +    + + FP+T H+E
Sbjct: 427 GGYALRSAGVINMFPHTGHVE 447


>gi|23465954|ref|NP_696557.1| hypothetical protein BL1394 [Bifidobacterium longum NCC2705]
 gi|50401592|sp|Q8G4I8|Y1394_BIFLO RecName: Full=Uncharacterized RNA methyltransferase BL1394
 gi|23326666|gb|AAN25193.1| conserved hypothetical protein with duf90 [Bifidobacterium longum
           NCC2705]
          Length = 435

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 241 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 300

Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 301 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 347

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 348 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 407

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   L  R
Sbjct: 408 EGYELKDIRAFDIYPMTHHVETVALFTR 435


>gi|115504421|ref|XP_001219003.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|83642485|emb|CAJ16516.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 559

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 86/196 (43%), Gaps = 21/196 (10%)

Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N AG+ + + E V  A    +  LL+L CG G   + LA+H  RV+ +E+ + +
Sbjct: 371 TSFFQVNTAGMELLLRETVAVAELTPETTLLDLCCGTGTIGIALAKHVKRVIGIELVESA 430

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   N V N        +    ++  +      KDI           +DPPR+G
Sbjct: 431 VRDARLNAERNGVRNATFNCGRVEHLLPSVISQLSPEDRKDI--------VAILDPPRAG 482

Query: 304 LDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT-------IERLALF--DQFP 351
           +    +  ++    I   +YISC   +L RD   L+   T          +A F  D FP
Sbjct: 483 VTPTVLKWIRGTATIRRLVYISCEQKALQRDCPPLTKPATKAYRESPFNVVAGFAIDMFP 542

Query: 352 YTRHMECGVLLVRKPS 367
           +T H+E   +L R  S
Sbjct: 543 HTPHVEMVAVLSRSNS 558


>gi|323489809|ref|ZP_08095034.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
 gi|323396547|gb|EGA89368.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
          Length = 454

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 165/387 (42%), Gaps = 56/387 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y QQL EK D + Q +  + +   +Q+  +    +P  YR +++F     G  +   +F 
Sbjct: 93  YSQQLVEKRDLVVQALERYLKGTKVQVEETIGMEDPWRYRNKSQFQTRLKGSKVIAGLFA 152

Query: 65  QQTKERMRIDYFM---PGSLLINALMIEMMATIRL--------EPLLRAKLFQIDYLTSQ 113
           + + + + ID  +   P + +I   +  ++  +++        + ++R  + +    T +
Sbjct: 153 EGSHQLLDIDECIVQHPDTTVITNAVKRILEELKMPIYDGKTMKGIIRTIVVRTGVNTGE 212

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +    LL +  ++    L          + ++   NK K  L   + DE
Sbjct: 213 IQLVLVTTRSKIPQKELLLERLKKIDTNL----------VSIVQNINKEKTSLV--FGDE 260

Query: 170 RLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220
            +T+ G+  I+ ++          +F Q N    V + + +  AA    +  +++ YCG 
Sbjct: 261 TITLFGKDTIHEELGELAFDLSARAFFQLNPTQTVKLYDEIKRAAQLTGKETVVDAYCGV 320

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L LA     V  +++   SV  A+ N  A      K V  +++++ +    E    
Sbjct: 321 GTIGLWLADSAKEVRGMDVLHESVVDAKANAKAQGYT-AKYVTGTAEKWLELWSNE---- 375

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTT 338
                    +    + VDPPR+GL D+ +  +++  P   +Y SCNP +L +DL  L+  
Sbjct: 376 --------GFVPDVLTVDPPRTGLADSLLQTILKVKPKRFVYTSCNPSTLAKDLQQLTKI 427

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + IE +   D FP T  +E    LV K
Sbjct: 428 YRIEYIQPVDMFPQTAQVESVTKLVLK 454


>gi|57234195|ref|YP_181780.1| RNA methyltransferase [Dehalococcoides ethenogenes 195]
 gi|57224643|gb|AAW39700.1| RNA methyltransferase, TrmA family [Dehalococcoides ethenogenes
           195]
          Length = 395

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 82/155 (52%), Gaps = 20/155 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G F+++L+   +RV+A+E +  +++ AR NIA   ++N+++++  +++    
Sbjct: 254 LVDAYAGVGTFAVLLSPDCNRVIAIEESAAAIKDARLNIAG--IDNIELIQSKTEDVISQ 311

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
            + + +                + +DP RSG   + +  +   P  +++Y++C+P SL R
Sbjct: 312 FQGQMD---------------ALILDPSRSGAHPSVLASICQNPPRNLVYVACDPSSLAR 356

Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL I L     + ++   D FP T H+E   L+ R
Sbjct: 357 DLKILLGGPFELSQVIPVDMFPQTYHVETVCLMSR 391


>gi|83719402|ref|YP_442750.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           thailandensis E264]
 gi|83653227|gb|ABC37290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           thailandensis E264]
          Length = 498

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 320 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTS 379

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+           F       R    +   D+H+   F    VDPPR G 
Sbjct: 380 RALANAKENGVDG-------HTSFAS-----RNLFEVTADDLHALGAFDKFLVDPPREGA 427

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T 
Sbjct: 428 LAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTS 487

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 488 HVESIALFER 497


>gi|307257165|ref|ZP_07538937.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864327|gb|EFM96238.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 391

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+         ++  +EI+  ++ +A  + A   + NV    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F  A+      ++ K  D+       + V+PPR G+       +     P+++Y SCN  
Sbjct: 307 F--ALN-----DKGKSPDL-------VIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQ 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 353 TMAKDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|295692497|ref|YP_003601107.1| RNA methyltransferase [Lactobacillus crispatus ST1]
 gi|295030603|emb|CBL50082.1| RNA methyltransferase [Lactobacillus crispatus ST1]
          Length = 462

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S ++    
Sbjct: 317 LIDAYSGVGTLGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV--- 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                    L ++         + VDPPR+GL  + +  +++  P   +YISCNP +L +
Sbjct: 374 ---------LPELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC-GVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 425 DLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLVLRK 460


>gi|312132559|ref|YP_003999898.1| trma [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773496|gb|ADQ02984.1| TrmA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 422

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287

Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   L  R
Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422


>gi|291543770|emb|CBL16879.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. 18P13]
          Length = 451

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 70/159 (44%), Gaps = 19/159 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK--IVRMSSKEF 269
            LL+LYCG G   L +A     +  VE+   +VE A  N   N + N    +   +    
Sbjct: 306 SLLDLYCGTGTIGLSMADGVKHLTGVEVIPQAVENAIRNARENRIENADFHVGDAAQWAQ 365

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
             A R E                  I +DPPR G D  T+  V   A   I+ ISCNP +
Sbjct: 366 QLAQRGEHP--------------DVIVLDPPRKGCDAQTLEAVCRMAPQRIVMISCNPAT 411

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RD ++L    +  +++   D FP T H+EC VL+ RK
Sbjct: 412 AARDCALLDKMGYHAQKVQAVDLFPRTGHVECVVLMSRK 450


>gi|225871008|ref|YP_002746955.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047]
 gi|225700412|emb|CAW94786.1| putative RNA methyltransferase [Streptococcus equi subsp. equi
           4047]
          Length = 455

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 153/385 (39%), Gaps = 52/385 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR-------SEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D +RQ +  F+    + F        +EP HYR + +F     G  +   +
Sbjct: 89  YPKQLYFKDDIIRQALKKFKPKGYEEFEIRHTLGMAEPQHYRAKLQFQTRSFGGSVKAGL 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEM----------------MATIRLEPLLRAKL-- 104
           F + +   + ID  +    L  A++  +                +A IR   + RA+   
Sbjct: 149 FSEGSHCLVAIDDCLVQDQLTQAIVNHVTQLLDRYRIPIYNERRVAGIRTVMVRRAQASD 208

Query: 105 -FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             Q+ +++S+  +    +          R  A+ +  +  +  Y         KT+I   
Sbjct: 209 QVQLIFVSSKEVRLAGLIAELTAAFPQIRTVALNINTSKTSDIY-------GAKTEILWG 261

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           ++ + E +      L  R    +F Q N      +   V+ A +    + +++ YCG G+
Sbjct: 262 QETIQEEVLSHSFALSPR----AFYQLNPTQTEVLYSQVVQALEPTAEEHIIDAYCGVGS 317

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A     V  ++I   ++  AR N  A   +N       ++E   +   E      
Sbjct: 318 IGLAVANKVRSVRGMDIIPEAIADARKNAQALGFDNAYYETGKAEELIPSWYAE------ 371

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHT 340
                  YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   + 
Sbjct: 372 ------GYRADALIVDPPRTGLDDKLLQTILHYQPAKMVYVSCNTSTLARDLVPLVQVYD 425

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +  +   D FP+T   E  V L ++
Sbjct: 426 VIYIQSVDMFPHTARTEAVVKLQKR 450


>gi|239621237|ref|ZP_04664268.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515698|gb|EEQ55565.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 422

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 98/208 (47%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287

Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A ++N+V               R  + +
Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDA-------------RAGDVS 334

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   L  R
Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422


>gi|261405173|ref|YP_003241414.1| TrmA family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261281636|gb|ACX63607.1| RNA methyltransferase, TrmA family [Paenibacillus sp. Y412MC10]
          Length = 532

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 19/184 (10%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N    V + E V AA  G+ G   +++ YCG G   L LA +   V  +E    +
Sbjct: 360 AFFQLNPQQTVKLYESVRAAA-GLTGKETVIDAYCGTGTIGLWLAPYAKEVRGIETIPEA 418

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A+ N   N   N       ++E      +E              +   I  DPPR+G
Sbjct: 419 VEDAKANAQRNGRANASFHVGQAEELLPRWVKE------------GMKPDVIIADPPRTG 466

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360
           LD   +  V +  P   +Y+SCNP +L +D  + L   + +E     D FP T H+E  V
Sbjct: 467 LDPRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDGGYELEWAQPVDMFPQTSHVEA-V 525

Query: 361 LLVR 364
           LL++
Sbjct: 526 LLMK 529


>gi|227877151|ref|ZP_03995225.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256848986|ref|ZP_05554420.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|262047127|ref|ZP_06020086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus MV-3A-US]
 gi|227863205|gb|EEJ70650.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256714525|gb|EEU29512.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|260572704|gb|EEX29265.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus MV-3A-US]
          Length = 462

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S ++    
Sbjct: 317 LIDAYSGVGTLGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV--- 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                    L ++         + VDPPR+GL  + +  +++  P   +YISCNP +L +
Sbjct: 374 ---------LPELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQ 424

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 425 DLVLLSEAYDVRVIQNVDMLPQTPRCEAIAKLV 457


>gi|260889091|ref|ZP_05900354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii
           F0254]
 gi|260861151|gb|EEX75651.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii
           F0254]
          Length = 476

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G    ++++   +V  +E+   +VE A  N   N++ N   +          
Sbjct: 331 VFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDV------ 384

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                 F +L + D +      + +DPPR+G+ + T+  +  Y   +I+Y+SCNP +L  
Sbjct: 385 ------FAKLDEFDNNGINPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKTLMT 438

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL       + + R ++ D FP T H+E   LL +
Sbjct: 439 DLMKFEEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473


>gi|325841300|ref|ZP_08167401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
 gi|325489981|gb|EGC92328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
          Length = 468

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 14/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G     +A     V  V+I + ++  A+ N   N+++N       ++     
Sbjct: 314 VVDAYCGVGTIGQWVADQASEVRGVDITRAAIIDAKANAKLNNIDNTYYAVGKAESIVPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
              E             ++   + VDPPR+G+    + M++      I+Y+SCNP +L +
Sbjct: 374 WTNE------------GFKPDVVIVDPPRTGMGPELIEMLKRVQPKRIVYVSCNPSTLAK 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L  L+  + ++ +   D FP T H+E  V L R
Sbjct: 422 NLKELTKKYRVDYIQPIDMFPQTSHVEAVVRLTR 455


>gi|303253313|ref|ZP_07339462.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248135|ref|ZP_07530163.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307261594|ref|ZP_07543262.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302647995|gb|EFL78202.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855312|gb|EFM87487.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306868717|gb|EFN00526.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 391

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+         ++  +EI+  ++ +A  + A   + NV    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F  A+      ++ K  D+       + V+PPR G+       +     P+++Y SCN  
Sbjct: 307 F--ALN-----DKGKSPDL-------VIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQ 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 353 TMAKDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|171778765|ref|ZP_02919861.1| hypothetical protein STRINF_00713 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282722|gb|EDT48146.1| hypothetical protein STRINF_00713 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 496

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 14/160 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G      A     V  ++I   ++  A+ N      +N       ++E    
Sbjct: 308 VIDAYCGVGTIGFAFADKVKSVRGMDIIPEAIADAKKNAQRMGFDNTHYEAGRAEEIIPK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           DL  LS  + +  +   D FP+T   E  V L ++    H
Sbjct: 416 DLVKLSKVYDVHYIQSVDMFPHTARTEAVVKLSKRDINHH 455


>gi|297191558|ref|ZP_06908956.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150990|gb|EDY63203.2| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 456

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 23/160 (14%)

Query: 210 QGDL-LELYCGNGNFSLVLA-RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +GD+ L+LYCG G F+  LA R  D+  VL +E +K +VE AR+N+          VR+ 
Sbjct: 306 KGDMALDLYCGVGLFAGALADRVGDKGAVLGIETSKRAVEDARHNL-----QQFDRVRVE 360

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323
             +    + R      +  +D+       I +DPPR+G    TV  +       I Y++C
Sbjct: 361 HGKVEAVLPR----TGIDSVDL-------IVLDPPRAGAGKQTVRHLAGLGARRIAYVAC 409

Query: 324 NPDSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLL 362
           +P +L RDL+  +      R L  FD FP T H+EC  +L
Sbjct: 410 DPAALARDLAYFAEAGYKPRTLRAFDLFPMTHHVECVAIL 449


>gi|119026073|ref|YP_909918.1| RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765657|dbj|BAF39836.1| hypothetical RNA methyltransferase [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 421

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 26/211 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           E++TV GR   Y      F Q     P A +  H++  V     G     L +LY G+G 
Sbjct: 224 EKVTVCGREFEYGVDAGGFWQMHRHAPIA-LTGHVMSLVHGELDGATSACLWDLYSGSGL 282

Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+L LA       R+L+VE  K +V+ A+ N+ A H+ NV   R+     T A  R    
Sbjct: 283 FTLPLATLSAGRTRMLSVEGGKTAVKHAQRNLRAIHLGNVD-ARVGDVAKTLANVR---- 337

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
           N L   DI       + +DPPR+G        +       ++YI+C+P SL RD + L++
Sbjct: 338 NDLAKPDI-------VVLDPPRAGARAKVCRQIAESGARSVVYIACDPASLARDTATLAS 390

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKPS 367
             + +  +  FD +P T H+E  V L RK +
Sbjct: 391 LGYDLADIRAFDIYPTTHHVET-VALFRKAT 420


>gi|24212798|ref|NP_710279.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|50401585|sp|Q8F9U1|Y098_LEPIN RecName: Full=Uncharacterized RNA methyltransferase LA_0098
 gi|24193445|gb|AAN47297.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 415

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 94/193 (48%), Gaps = 16/193 (8%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           + +++      F+Q N  +    LE +       Q  +LELYCG+G  ++ L       L
Sbjct: 235 KRIVWEIPAGGFSQVNRYLIAPWLEKIFELVPNNQNRILELYCGSGLIAIALKSKTTSWL 294

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
             EI+   V+ A+ N+  N +        SS +F + +  E ++   +++   S+     
Sbjct: 295 GYEISSDCVQQAKRNVLLNGI--------SSCDF-KTLNLETDWIDSEEVLNSSF----W 341

Query: 296 FVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPY 352
            ++PPR+GL    +  +++  P+  LY SCN  +L RDLS+ L+  + +  + L D FP 
Sbjct: 342 IMNPPRAGLSKKVLQTLIKTSPNGFLYSSCNHTTLVRDLSLFLNKDYKLSNVTLVDFFPR 401

Query: 353 TRHMECGVLLVRK 365
           T+H E  V + +K
Sbjct: 402 TKHFEVIVKVEKK 414


>gi|309790389|ref|ZP_07684954.1| (Uracil-5)-methyltransferase [Oscillochloris trichoides DG6]
 gi|308227581|gb|EFO81244.1| (Uracil-5)-methyltransferase [Oscillochloris trichoides DG6]
          Length = 394

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 25/171 (14%)

Query: 195 NVHMLEWVLAATK---GIQGDLLELYCGNGNFSLVLARHFDRVLAVE-IAKPSVEAARYN 250
           NVH+L+ +LAA     G    + +LY G G   + LA    +V++VE +A+ +  AA+++
Sbjct: 235 NVHLLDHLLAAVGEAVGPVASVADLYGGVGTIGMHLAPQVGQVISVEEVAESAALAAQHS 294

Query: 251 IAANHVNNVKIVRMSSKEF--TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DA 307
           +A   V N++ +      +  TQA                   +    VDPPR GL  + 
Sbjct: 295 VAQG-VTNLQAINQDVLSYLRTQA----------------PAAWPVAVVDPPRIGLGPEV 337

Query: 308 TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
              +++  P  ++Y+SCNP +L  DL IL   + +  L  +D FP+T H+E
Sbjct: 338 CAELLRIAPQRLVYVSCNPITLVEDLRILGAHYRLRHLTGYDMFPHTPHVE 388


>gi|257437892|ref|ZP_05613647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii A2-165]
 gi|257199552|gb|EEU97836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii A2-165]
          Length = 374

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   L  +    +V+ VE+ + +V  A  N  A H N+VK  R  + + TQ 
Sbjct: 226 VLDAYCGIGTIGLTASGRAKQVVGVELNRDAVRDAIGN--ARH-NDVKNARFFAADATQW 282

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           +       +  D+         IF+DPPR G     +  V   A   ++Y+SCNP+++ R
Sbjct: 283 ITEAAAAGQRADV---------IFMDPPREGSTPQFIESVARMAPKRVVYVSCNPETMAR 333

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL++L+   +  E     D FP T H E    L R
Sbjct: 334 DLALLTAKGYRAEGFTPVDLFPQTAHCEVVCALTR 368


>gi|256390841|ref|YP_003112405.1| RNA methyltransferase, TrmA family [Catenulispora acidiphila DSM
           44928]
 gi|256357067|gb|ACU70564.1| RNA methyltransferase, TrmA family [Catenulispora acidiphila DSM
           44928]
          Length = 455

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 18/207 (8%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           R YV  R    GRT  +R   + F Q +      + E VL       GD+ L+LYCG G 
Sbjct: 254 RPYV--REVAEGRT--WRVSGSGFWQVHPAAPDVLTEAVLDFLDPKDGDVALDLYCGVGL 309

Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA        VLAVE+ + +V  A +N+     ++ +     S EF      E   
Sbjct: 310 FAAPLAEAVGESGAVLAVELDRQAVRDAAHNL--GFADDAE----ESTEFPWVDLVEGSV 363

Query: 280 NR-LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
           +  L D      R   + +DPPR+G        + A     + Y++C+P +L RD++ L+
Sbjct: 364 DEVLADEGYVPDRADVVVLDPPRAGAGRDVCARIAALGPRAVAYVACDPAALARDVAYLA 423

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLL 362
              + +  L  FD FP TRH+EC  LL
Sbjct: 424 EAGYELTDLRAFDLFPMTRHVECVALL 450


>gi|165976538|ref|YP_001652131.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876639|gb|ABY69687.1| SAM-dependent methyltransferase related to
           tRNA(uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 391

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+         ++  +EI+  ++ +A  + A   + NV    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F  A+      ++ K  D+       + V+PPR G+       +     P+++Y SCN  
Sbjct: 307 F--ALN-----DKGKSPDL-------VIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQ 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 353 TMAKDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|307250368|ref|ZP_07532316.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857578|gb|EFM89686.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 391

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+         ++  +EI+  ++ +A  + A   + NV    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F  A+      ++ K  D+       + V+PPR G+       +     P+++Y SCN  
Sbjct: 307 F--ALN-----DKGKSPDL-------VIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQ 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 353 TMAKDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|269102464|ref|ZP_06155161.1| RNA methyltransferase TrmA family [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162362|gb|EEZ40858.1| RNA methyltransferase TrmA family [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 379

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L        V  +EI   ++ +A+ +  A  + N+    + S  F+  
Sbjct: 240 MWDLFCGVGGFALHCVSPETDVTGIEIEPEAIASAQRSAQAMGITNLDFAALDSTGFSME 299

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                          H    + + V+PPR G+ +     +   A  HI+Y SCNP++L  
Sbjct: 300 ---------------HDTAPELVLVNPPRRGIGEQLCQQLSYFAPKHIIYSSCNPETLAI 344

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + +E++  FD FP+T H E  VLL  K
Sbjct: 345 DIQRLE-GYELEKVQWFDMFPHTDHAEVLVLLSHK 378


>gi|262113703|emb|CAR95370.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus phage
           phi-m46.1]
          Length = 462

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 16/183 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 291 SFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N A N + N   +  +++       ++              +   I VDPPR GL
Sbjct: 351 RDAQQNAALNGITNAYFIADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC  L
Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVECVAL 458

Query: 362 LVR 364
           LV+
Sbjct: 459 LVK 461


>gi|323141153|ref|ZP_08076054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414296|gb|EFY05114.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Phascolarctobacterium
           sp. YIT 12067]
          Length = 456

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           ++++YCG G  SL LARH  +V  +EI  P++E A+ N   N   N + I   ++ E  +
Sbjct: 313 VVDVYCGTGTISLYLARHAKQVYGIEIVAPAIENAKKNAEENKCANAEFICGDAAVELPK 372

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
            +      + +      +   + +           A +  VQ    ++Y+SCNP SL RD
Sbjct: 373 LLAGGVRPDVVVVDPPRAGCEQKVL----------AAIAEVQP-ERVVYVSCNPASLARD 421

Query: 332 LSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364
           L+ +   H  + +     D FP T H+EC  LL R
Sbjct: 422 LAFME-QHGYKAIVAQPVDMFPMTSHVECVTLLTR 455


>gi|293374357|ref|ZP_06620684.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
           PC909]
 gi|292647020|gb|EFF65003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
           PC909]
          Length = 468

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 14/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G     +A     V  V+I + ++  A+ N   N+++N       ++     
Sbjct: 314 VVDAYCGVGTIGQWVADQASEVRGVDITRAAIIDAKANAKLNNIDNTYYAVGKAESIVPK 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
              E             ++   + VDPPR+G+    + M++      I+Y+SCNP +L +
Sbjct: 374 WANE------------GFKPDVVIVDPPRTGMGPELIEMLKRVQPKRIVYVSCNPSTLAK 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L  L+  + ++ +   D FP T H+E  V L R
Sbjct: 422 NLKELTKKYRVDYIQPIDMFPQTSHVEAVVRLTR 455


>gi|257792631|ref|YP_003183237.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243]
 gi|257476528|gb|ACV56848.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243]
          Length = 438

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR-V 234
           L +R    SF Q NA +   +L        G  G    ++ YCG G   LV A+   R V
Sbjct: 249 LSFRISSQSFYQVNA-VQTEVLYERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQV 307

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + V+    +V  AR N   N V N +     +  F   MR         D+         
Sbjct: 308 IGVDTVASAVRDARENAKHNGVENARFAVGDAGAF---MRERAAAGDAVDV--------- 355

Query: 295 IFVDPPRSGLDDA--TVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
           + +DPPR+G  +      +  A   I+YISCNP +  RDL+ L    + +  +   D FP
Sbjct: 356 LLMDPPRAGSSEEFLAAAVTLAPRRIVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFP 415

Query: 352 YTRHMECGVLLVRKPSGWHQ 371
           +T H+E  + LV +  G+ +
Sbjct: 416 HTDHIET-IALVERVEGFFE 434


>gi|220911913|ref|YP_002487222.1| 23S rRNA methyluridine methyltransferase [Arthrobacter
           chlorophenolicus A6]
 gi|219858791|gb|ACL39133.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter
           chlorophenolicus A6]
          Length = 375

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 25/185 (13%)

Query: 186 SFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           SF Q N+ +   +     EWV    +     + +LYCG G F+L +A     V  +E + 
Sbjct: 208 SFFQTNSHMAAALYRQGREWV---NELAPASVWDLYCGVGGFALHVANPSRTVTGIETSS 264

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            ++ +AR +     +  ++     +  F  A R+  +                + V+PPR
Sbjct: 265 EAIVSARLSSDEAGLQGMEFEAGDATAFALAARQAPDL---------------VIVNPPR 309

Query: 302 SGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
            G+     G +++    H++Y SCN  SL RDL+ L  + T  R+ + D FP T H E  
Sbjct: 310 RGIGKELCGWLESSDVQHVVYSSCNAQSLARDLAALP-SFTARRVRVLDMFPQTTHYEVM 368

Query: 360 VLLVR 364
           VLL R
Sbjct: 369 VLLER 373


>gi|167619816|ref|ZP_02388447.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           thailandensis Bt4]
 gi|257138961|ref|ZP_05587223.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           thailandensis E264]
 gi|143580771|sp|Q2SWE9|RUMA_BURTA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 465

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTS 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+           F       R    +   D+H+   F    VDPPR G 
Sbjct: 347 RALANAKENGVDG-------HTSFAS-----RNLFEVTADDLHALGAFDKFLVDPPREGA 394

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T 
Sbjct: 395 LAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTS 454

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 455 HVESIALFER 464


>gi|322420278|ref|YP_004199501.1| TrmA family RNA methyltransferase [Geobacter sp. M18]
 gi|320126665|gb|ADW14225.1| RNA methyltransferase, TrmA family [Geobacter sp. M18]
          Length = 566

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 21/189 (11%)

Query: 185 NSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           +SF Q N+G    + E V  LA   G +  ++++YCG G  SL LA     V+ +E  + 
Sbjct: 393 HSFFQVNSGAARIIYEKVRELARLTGKE-RVIDVYCGIGGISLFLADQAREVVGIEFVEA 451

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V  A  N A N   N         E   A+    E       D+       I ++PPR 
Sbjct: 452 AVADATLNAALNLARNCHF------EAGDAVHLIDEIGEEGGADL-------IVLNPPRK 498

Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMEC 358
           G D+  +  V A     I+Y+SC+P++L RDL IL+     T+E +   D FP T H+E 
Sbjct: 499 GCDEKVLKSVAAIKPARIIYVSCSPETLARDLDILAQLGYKTLE-VHPVDMFPQTVHVED 557

Query: 359 GVLLVRKPS 367
             LL R+ S
Sbjct: 558 VALLERRES 566


>gi|262282787|ref|ZP_06060555.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           2_1_36FAA]
 gi|262262078|gb|EEY80776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           2_1_36FAA]
          Length = 454

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 306 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             +R   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 366 WYTE------------GFRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 413

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + +  +   D FP+T   E  V L ++ S
Sbjct: 414 DLVKLSQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 450


>gi|239996013|ref|ZP_04716537.1| RNA methyltransferase, TrmA family protein [Alteromonas macleodii
           ATCC 27126]
          Length = 486

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 29/235 (12%)

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
           C I L+  L  ++ QI+ +GR   T + ++        TV   +       N F Q N  
Sbjct: 276 CGIELK--LENKQAQIRSVGRG--TDMVMN--------TV--NSCSISPSANDFIQINKV 321

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           +N  M+   +        + + + + G GNF+L +A+   +V AVE     V  A+ N  
Sbjct: 322 VNEKMVNQAIGWLNPEPNERVADWFSGLGNFTLPIAKLGAKVQAVEGVAEMVRRAKDNAQ 381

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              + NV+ + +   + T      +              F  + +DP R G       +V
Sbjct: 382 QQGIENVEWLHLDLADKTNVEASLQ------------LGFDKVLLDPSREGALTVCHALV 429

Query: 313 QAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +A P  I+Y+SCNP +  RD  +L    + +E+  + + FP+T HME   L  RK
Sbjct: 430 KALPKTIVYVSCNPSTFSRDAKVLIDGGYEMEKAGVAEMFPFTHHMEMMALFTRK 484


>gi|224419305|ref|ZP_03657311.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|313142804|ref|ZP_07804997.1| predicted protein [Helicobacter canadensis MIT 98-5491]
 gi|313131835|gb|EFR49452.1| predicted protein [Helicobacter canadensis MIT 98-5491]
          Length = 55

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 38/53 (71%)

Query: 315 YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +  ILYISCNP SL +DL ILS TH I + A FDQFP+T H+E G+LL +  S
Sbjct: 1   FSSILYISCNPLSLAKDLKILSQTHRIVKAAFFDQFPHTSHLETGILLQKVDS 53


>gi|325695098|gb|EGD37000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK150]
          Length = 456

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L +K S
Sbjct: 416 DLVKLCRVYDVRYIQSVDMFPHTARTEAVVKLSKKDS 452


>gi|262282939|ref|ZP_06060706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           2_1_36FAA]
 gi|262261191|gb|EEY79890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           2_1_36FAA]
          Length = 480

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N A N + N   V  +++    A
Sbjct: 332 VVDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAAINGITNSHYVCDTAE---NA 388

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 389 MK-----NWLKE----GIQPSLILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 439

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LLVR
Sbjct: 440 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLVR 474


>gi|254467847|ref|ZP_05081253.1| 23S rRNA (uracil-5-)-methyltransferase [beta proteobacterium KB13]
 gi|207086657|gb|EDZ63940.1| 23S rRNA (uracil-5-)-methyltransferase [beta proteobacterium KB13]
          Length = 437

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 117/261 (44%), Gaps = 26/261 (9%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI--QLIGRANKTKICLD 163
           QI+Y  S  D+ I      R+LD    E   +L +  +AR  +I  Q  G      +  +
Sbjct: 185 QIEY-ASNGDRDIFIF---RILDPLSIEDIKKLSEFSNARNIEIWTQSKGPETVKPLFPE 240

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGN 222
           RD       +A   L      + F Q N  IN  M++  L       Q ++++ + G GN
Sbjct: 241 RDSEIISYPIAKYELNLEFNPSGFIQINPYINQLMIDKALELLNLNPQDEVVDFFSGLGN 300

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF-NR 281
           F+L +A++   V+ +E ++  V   + N   N++NNV      S +++     + +F N 
Sbjct: 301 FTLPIAKYAHSVIGIEGSEDLVNLGQKNAGLNNLNNV------SFQYSNLFEVDVDFVNS 354

Query: 282 LKDIDIHSYRFKTIFVDPPRSG---LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--S 336
           LK+ +          +DPPR G   L +           I+Y+SCNP +L RD +IL   
Sbjct: 355 LKNKN-------KWLLDPPRDGAMQLLELISKDTMLPETIVYVSCNPATLARDANILVND 407

Query: 337 TTHTIERLALFDQFPYTRHME 357
             +  +   + + FP+T H+E
Sbjct: 408 KGYKYQSAGILNMFPHTSHIE 428


>gi|332367359|gb|EGJ45092.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 456

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G+     A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|227873615|ref|ZP_03991853.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268]
 gi|227840533|gb|EEJ50925.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268]
          Length = 422

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 13/158 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + ++++   + + VEI + +VEAA+ N   N V N         +  +A
Sbjct: 275 IYDLYSGTGTITQLMSKVAKQAIGVEIVEEAVEAAKENAKENKVENCIFYAGDVLKVLEA 334

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
            +   E   L   D        I VDPPR G+    +  + +Y    ++Y++C P SL R
Sbjct: 335 GQGATE---LPYPDF-------IIVDPPRDGMHKKALEKIISYGVKRLVYVACKPKSLAR 384

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L +  + +++L   D FP T + E   LL ++ S
Sbjct: 385 DLEALQNAGYKVQKLCAVDMFPRTNNCEVVALLEKEES 422


>gi|327462889|gb|EGF09210.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1]
          Length = 456

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G+     A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|332362833|gb|EGJ40626.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK49]
          Length = 456

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYTE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452


>gi|72162326|ref|YP_289983.1| 23S rRNA methyltransferase/RumA [Thermobifida fusca YX]
 gi|71916058|gb|AAZ55960.1| 23S rRNA methyltransferase/RumA [Thermobifida fusca YX]
          Length = 419

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 23/156 (14%)

Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  L        RV  VE    +V  AR+N+      ++  V+++  +  
Sbjct: 278 LDLYCGVGLFAGALGAAVGPQGRVFGVESGAEAVRDARHNL-----RDLPQVQITRADVA 332

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSL 328
             +RR               R   +  DPPRSG+    V  + A  P  I Y+SC+P + 
Sbjct: 333 THLRR-----------WTPPRIDLVVADPPRSGMGADVVRRLAALRPQRIAYVSCDPATF 381

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMEC-GVLL 362
            RDL++ +   + ++ L  FD FP T H+EC GVLL
Sbjct: 382 ARDLAVFAEHGYRMDGLRAFDAFPMTHHVECVGVLL 417


>gi|324993619|gb|EGC25538.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK405]
 gi|324995069|gb|EGC26982.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK678]
 gi|327490048|gb|EGF21836.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1058]
          Length = 456

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G+     A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|157146487|ref|YP_001453806.1| 23S rRNA methyluridine methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|167012636|sp|A8AIQ7|RUMB_CITK8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|157083692|gb|ABV13370.1| hypothetical protein CKO_02247 [Citrobacter koseri ATCC BAA-895]
          Length = 376

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A     +  +EIA  ++  A+ + A   + N+    + S +F   
Sbjct: 237 MWDLFCGVGGFGLHCATPEMTLTGIEIAPEAIACAKQSAAELGLTNLHFQALDSTQFATG 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
                E                + V+PPR G+  A    + Q  P +I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKALCDYLSQMAPEYIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D++ L   + IER+ LFD FP+T H E   LL +
Sbjct: 342 DIANLPG-YRIERVQLFDMFPHTAHYEVLTLLTK 374


>gi|125718628|ref|YP_001035761.1| RNA methyltransferase [Streptococcus sanguinis SK36]
 gi|125498545|gb|ABN45211.1| RNA methyltransferase, putative [Streptococcus sanguinis SK36]
          Length = 456

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452


>gi|311896063|dbj|BAJ28471.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 558

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 27/206 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           R +V ER   AGRT  +R     F Q +      +++ VL       G+  L+LYCG G 
Sbjct: 368 RTFVRER--AAGRT--WRVSNGGFWQIHPEAPDTLVDAVLTGLDPQWGESALDLYCGVGL 423

Query: 223 FSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+  LA        VL +E  K +V  AR+N+AA     ++ VR+   +    + R    
Sbjct: 424 FAGALAERVGEEGAVLGIESGKQAVLDARHNLAA-----LEQVRIECDKVETLLPR---- 474

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
             +   D+       I +DPPR+G    TV  + +     I Y++C+P +L RDL+    
Sbjct: 475 TGITSTDL-------IVLDPPRAGAGRETVAHLSSLEARRIAYVACDPAALARDLAFFRE 527

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + +  L  FD FP T+H EC  +L
Sbjct: 528 GGYRLVSLRAFDLFPMTQHFECVAIL 553


>gi|331091394|ref|ZP_08340233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404258|gb|EGG83805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 454

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 23/232 (9%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           ++   LH     +  + +++KT +   +DY  E L      + ++    SF QPN+    
Sbjct: 241 KIVGILHILNDSLSDVVQSDKTILLYGQDYFYEELL----GMEFKITPFSFFQPNSVGAE 296

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            + + V      I    + +L+ G G    +LA     V+ VEI + +VEAA+ N   N 
Sbjct: 297 VLYDTVREYIGDIDNMTIYDLFSGTGTIGQILAPVAKEVIGVEIIEEAVEAAKENAEHNG 356

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++N K +                F  L +I+    +   I +DPPR G+    +  +  Y
Sbjct: 357 LSNCKFIAGDV------------FKVLDEIE---EKPDVIVLDPPRDGIHPKALPKILDY 401

Query: 316 --PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
               I+YISC   SL RDL ++    + +E+    DQF  T H+E   LL +
Sbjct: 402 QVDKIVYISCKVTSLARDLEMIQERGYRVEKCVAVDQFANTAHVETVALLSK 453


>gi|238923775|ref|YP_002937291.1| tRNA (uracil-5-) -methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|238875450|gb|ACR75157.1| tRNA (uracil-5-) -methyltransferase [Eubacterium rectale ATCC
           33656]
          Length = 470

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 112/242 (46%), Gaps = 30/242 (12%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           R +  LH +   +  + +   T++     Y  E+L      L ++    SF Q N+ +  
Sbjct: 248 RFKGVLHTKNDSVADVVKNEGTEVLYGDSYFYEKLL----GLKFKITPFSFFQTNS-LGA 302

Query: 197 HML-----EWVLAATK-GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            +L     E++L   K  + G  + +LY G G  + ++A     V+ VEI + +V AA+ 
Sbjct: 303 EVLYETAREFILGDNKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKE 362

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N A N ++N K +                 + LK +D    +   I +DPPR G+    +
Sbjct: 363 NAALNGLDNCKFIAG---------------DVLKVLDEIEEKPDYIILDPPRDGIHPKAI 407

Query: 310 GMVQAY--PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           G +  Y   +++YISC P SL RDL I +   + +E++   D FP T H+E  VL+ +  
Sbjct: 408 GKIIEYGVENMVYISCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVETVVLMSKVN 467

Query: 367 SG 368
            G
Sbjct: 468 PG 469


>gi|222147749|ref|YP_002548706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium vitis
           S4]
 gi|221734737|gb|ACM35700.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium vitis
           S4]
          Length = 418

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 15/152 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG G F+L LAR   +VLAVE  + +V+A   ++AA +   +K ++   ++     R
Sbjct: 279 DLFCGIGTFTLRLARQA-QVLAVESDEKAVKA--LDLAARNTKGLKPIKAEKRDL---FR 332

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R    + LK +D        +  DPPR+G ++    + ++    I+ +SCN  +L RDLS
Sbjct: 333 RPLMVSELKGLD-------AVVFDPPRAGAEEQCAELARSQVKTIVAVSCNALTLARDLS 385

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           IL +  + I  +   DQF ++ H+E  V L +
Sbjct: 386 ILMAGGYRITAVTPIDQFLWSPHVEVVVALTK 417


>gi|149197047|ref|ZP_01874100.1| tRNA (uracil-5-) -methyltransferase [Lentisphaera araneosa
           HTCC2155]
 gi|149140157|gb|EDM28557.1| tRNA (uracil-5-) -methyltransferase [Lentisphaera araneosa
           HTCC2155]
          Length = 403

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 17/153 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ +CG+G  S+ L     +V+ +EI    VEAA +N     +   K V   + +  + 
Sbjct: 260 VIDAFCGSGFLSMGLRDV--KVVGLEIDAKGVEAANFNAQDQGLTTHKYV---AGDVNKL 314

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           +R+     RL  +   +    T+ +DPPR+G+   T+  +  ++   ILY+SC+P +L R
Sbjct: 315 LRQ-----RLGKLAPET----TLILDPPRAGVGPGTIKAISKRSPKWILYVSCDPGTLGR 365

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL  IL   +  ++LA+ D FP T H E  +LL
Sbjct: 366 DLKEILPLGYKHKKLAMLDMFPQTSHFESLILL 398


>gi|224543217|ref|ZP_03683756.1| hypothetical protein CATMIT_02417 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523850|gb|EEF92955.1| hypothetical protein CATMIT_02417 [Catenibacterium mitsuokai DSM
           15897]
          Length = 448

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LA+H  +V  VE+   ++  A+ N   NH+ N + V   +  F   
Sbjct: 306 VIDAYCGIGTISLTLAKHVKKVYGVEVVPQAIVDAKENAERNHITNAEFVCDDAGHFMTE 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                E            +   + VDPPR G     +  +    P  I+YISCN  +  R
Sbjct: 366 FVERNE------------KVDCVMVDPPRKGCSTEFLERLTTLSPERIVYISCNVATQAR 413

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL+ ++   +    +   D FP+T H+E  +LL+ K
Sbjct: 414 DLTYLVEKGYKPLNVQPVDMFPHTPHIE-NILLLSK 448


>gi|319937265|ref|ZP_08011672.1| hypothetical protein HMPREF9488_02507 [Coprobacillus sp. 29_1]
 gi|319807631|gb|EFW04224.1| hypothetical protein HMPREF9488_02507 [Coprobacillus sp. 29_1]
          Length = 379

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 21/158 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G   +++A    +V+ VE+ + + + A  N   N +NN+      + EF + 
Sbjct: 232 VLDTYCGIGTIGMMIASRVSQVIGVELNQEAYKDAVNNAKMNKINNIHFYNQDATEFMKD 291

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-----PHILYISCNPDS 327
           M  +R             +   + +DPPR+G   +T   VQA        ++Y+SC+P +
Sbjct: 292 MANQRT------------QIDCVIMDPPRAG---STKEFVQAIHILQPQQVIYVSCDPVT 336

Query: 328 LCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             RDL       +  + +  FD FP T+ +E  + L +
Sbjct: 337 QARDLQWFWDIGYQTQDIYPFDMFPQTQAIETVICLTK 374


>gi|56963072|ref|YP_174799.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
 gi|56909311|dbj|BAD63838.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
          Length = 471

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G     L    + V  ++I + ++E AR N   + +  V  V  + K     
Sbjct: 328 LVDAYCGVGTIGQWLGDQAEEVRGMDITEEAIENARSNAKKHGIAAVYEVGPAEKWLPLW 387

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           +++              ++   I VDPPRSG D   +  M++A P  I+Y+SCNP +L +
Sbjct: 388 LKQ-------------GFKPDVILVDPPRSGCDRQLLKSMLKAKPKRIVYVSCNPSTLAK 434

Query: 331 DLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+   I +  + I+ +   D FP+T  +E    L+ K
Sbjct: 435 DVQHLIEAGGYAIQSIQPVDMFPWTAQVESVTELILK 471


>gi|307709324|ref|ZP_07645782.1| RNA methyltransferase [Streptococcus mitis SK564]
 gi|307619907|gb|EFN99025.1| RNA methyltransferase [Streptococcus mitis SK564]
          Length = 456

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 15/158 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   NH++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPSLILVDPPRKGLIESFIKASTQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           D+ +     + ++++   D FP T H+E   LL R  +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVSLLFRSET 453


>gi|313892229|ref|ZP_07825822.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
           microaerophilus UPII 345-E]
 gi|313119367|gb|EFR42566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
           microaerophilus UPII 345-E]
          Length = 545

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 17/159 (10%)

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           GD  +++ YCG G  SL LA+    V+ +EI K ++E A+ N   N + NV+       +
Sbjct: 305 GDETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAK 364

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPD 326
           +            L ++     + + + +DP R+G D+  +  + +  P  I+Y+SCN  
Sbjct: 365 Y------------LPELAKKGIKAEVMVLDPVRAGCDEKVIEAIGKINPERIVYVSCNVA 412

Query: 327 SLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           +  RD+  LS   + + ++   D FP T H+E   LL +
Sbjct: 413 TQARDIERLSKKGYKLIKIQPIDMFPQTTHVETVALLYK 451


>gi|255099546|ref|ZP_05328523.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-63q42]
          Length = 451

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           + ++ ++   RDY+ E +      L ++    SF Q N        E + +  +   GD 
Sbjct: 255 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 306

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +
Sbjct: 307 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 366

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             + ++ + +                I VDPPR G+    +  +  +    I+YISCNP 
Sbjct: 367 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 411

Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SL  DL       + I+ +   D FP T H E  V L+R+
Sbjct: 412 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 451


>gi|297561816|ref|YP_003680790.1| RNA methyltransferase, TrmA family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846264|gb|ADH68284.1| RNA methyltransferase, TrmA family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 428

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 85/196 (43%), Gaps = 25/196 (12%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           R  V GR   YR     F Q +      +   VL A +   G+  L+LYCG G F+  LA
Sbjct: 235 REKVDGRE--YRVSAGGFWQVHPAAAEVLTAAVLDALEPKPGETALDLYCGAGLFTGALA 292

Query: 229 RHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R + VE    +V  ARYN+      +++ VR+   +    +R           
Sbjct: 293 AAVGPEGRAMGVESGAEAVRDARYNL-----KDMEQVRVEQGDVAAQLR----------- 336

Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIE 342
           +    R   + +DPPR+G     V  +    P  + Y+SC+P +L RDL S     + + 
Sbjct: 337 EWADVRADVVVLDPPRAGAGAEVVRSLTGTRPRRVAYVSCDPATLARDLASFERADYRLV 396

Query: 343 RLALFDQFPYTRHMEC 358
            L  FD FP T H+EC
Sbjct: 397 DLRAFDAFPMTHHVEC 412


>gi|296454344|ref|YP_003661487.1| (uracil-5)-methyltransferase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183775|gb|ADH00657.1| (Uracil-5)-methyltransferase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 422

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 25/208 (12%)

Query: 169 ERLTVAGRTLIYRQIENSF----TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E++T+ G T  Y+   N F     Q    +  H++  V    +     ++ +LY G+G F
Sbjct: 228 EQVTINGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLF 287

Query: 224 SLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE A+ +V+ A+ N+ A  +N+V               R  + +
Sbjct: 288 TLPLATMTGERTRMLSVEGARVAVKNAQRNLRAMDLNDVDA-------------RAGDVS 334

Query: 281 RLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-S 336
           R  D +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L  
Sbjct: 335 RTLDHVPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIG 394

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++ +  FD +P T H+E   L  R
Sbjct: 395 EGYELKDIRAFDIYPMTHHVETVALFTR 422


>gi|117620248|ref|YP_858149.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561655|gb|ABK38603.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 450

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 15/148 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA    +V+ +E  + ++  AR N A N + + +     +++    
Sbjct: 304 VFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL--- 360

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                    + ++         + +DPPR G D A +  +V   P  ++Y+SCNP +L R
Sbjct: 361 ---------MPELHAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLAR 411

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHME 357
           DL+ ++     ++ +   D FP++ H+E
Sbjct: 412 DLAWLVKQGFVLDEVQPVDMFPHSMHVE 439


>gi|309811689|ref|ZP_07705467.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Dermacoccus
           sp. Ellin185]
 gi|308434301|gb|EFP58155.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Dermacoccus
           sp. Ellin185]
          Length = 427

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 27/181 (14%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAK 241
            F Q + G     L+ V+  T    G+  L+LYCG G F+  LA       RV+ VE   
Sbjct: 258 GFWQVHPGAAATFLDAVIDETDPQPGESALDLYCGVGLFTRALADLVGPDGRVVGVEADA 317

Query: 242 PSVEAARYNIA-ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +V+ AR N+  A HV+ V          T  + + R         +   R   + +DPP
Sbjct: 318 DAVDHARTNMGGARHVDLV----------TSPVEKAR---------LPLERADVVVLDPP 358

Query: 301 RSGLD-DATVGMVQAYPHIL-YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
           R+G   D    +V   P ++ Y++C+P +L RDL   +S  + +  L  FD FP T+H+E
Sbjct: 359 RAGAGRDVVATIVGLAPRVVTYVACDPAALARDLGYFVSHGYELTNLRGFDAFPMTQHVE 418

Query: 358 C 358
           C
Sbjct: 419 C 419


>gi|306833840|ref|ZP_07466965.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC
           700338]
 gi|304424034|gb|EFM27175.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 456

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A++   V  VE+ + +VE A+ N A N + N   +   ++     
Sbjct: 308 VIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNSITNAHYIADPAEHAMAT 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSL 328
             ++              +   I VDPPR GL +    A+V M      I YISCNP ++
Sbjct: 368 WSKD------------GIKPSVILVDPPRKGLTENFIKASVAMQPE--KITYISCNPATM 413

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +     + + ++   D FP T H+E   LLVR
Sbjct: 414 ARDIKLYQELGYKLIKVQPVDLFPNTHHVEAVSLLVR 450


>gi|198284531|ref|YP_002220852.1| TrmA family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667266|ref|YP_002427198.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|254766918|sp|B7J921|RUMA_ACIF2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|254766919|sp|B5EPA4|RUMA_ACIF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|198249052|gb|ACH84645.1| RNA methyltransferase, TrmA family [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519479|gb|ACK80065.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 440

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 14/181 (7%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N   N  M+   +A  +   G+ +L+L+CG GNF+L +AR   +VL +E     V 
Sbjct: 271 FTQVNQAANQVMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVA 330

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N AAN + +    R +  + TQA  R  +F     ID        + +DPPRSG  
Sbjct: 331 LAAENAAANGLADK--ARYAVADLTQA--RMEDFAPAGAID-------KMLIDPPRSGAI 379

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLV 363
           +    +      ++Y+SCNP +L RD   L     + +    + + FP+T H+E   L  
Sbjct: 380 EVLRSLTPGVRRLVYVSCNPATLARDAEYLVHERGYRLRAAGVVNMFPHTAHVESIALFE 439

Query: 364 R 364
           R
Sbjct: 440 R 440


>gi|254413176|ref|ZP_05026947.1| 23S rRNA (uracil-5-)-methyltransferase [Microcoleus chthonoplastes
           PCC 7420]
 gi|196179796|gb|EDX74789.1| 23S rRNA (uracil-5-)-methyltransferase [Microcoleus chthonoplastes
           PCC 7420]
          Length = 468

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G F+L LA+   + L +E+   +VE A+ N   N + NVK    + +     
Sbjct: 325 LVDAYCGIGTFTLPLAKQVHQALGIEVQGTAVEQAQINAQINGITNVKFETGTVETLLP- 383

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
                +     DI         + +DPPR G +   +  ++   P  ++YISC P +L R
Sbjct: 384 -----QLGITPDI---------VLLDPPRQGCNPQVIDTLLSVMPQRLVYISCKPATLAR 429

Query: 331 DLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L     + +  +   D F  T H+EC   L ++
Sbjct: 430 DLKRLCHLGGYQLTHVQPADFFSQTPHVECAAFLEKQ 466


>gi|260685752|ref|YP_003216885.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           R20291]
 gi|260211768|emb|CBE02120.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           R20291]
          Length = 453

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           + ++ ++   RDY+ E +      L ++    SF Q N        E + +  +   GD 
Sbjct: 257 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 308

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +
Sbjct: 309 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 368

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             + ++ + +                I VDPPR G+    +  +  +    I+YISCNP 
Sbjct: 369 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 413

Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SL  DL       + I+ +   D FP T H E  V L+R+
Sbjct: 414 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 453


>gi|269125957|ref|YP_003299327.1| deoxyribonuclease/rho motif-related TRAM [Thermomonospora curvata
           DSM 43183]
 gi|268310915|gb|ACY97289.1| deoxyribonuclease/rho motif-related TRAM [Thermomonospora curvata
           DSM 43183]
          Length = 449

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 17/197 (8%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           R   AGR  +++   + F Q + G    + + VLAA +   G++ L+LYCG G F+ VL 
Sbjct: 253 REVAAGR--LWQVSGSGFWQVHPGAAQTLADAVLAALEPRPGEIALDLYCGVGLFAGVLG 310

Query: 229 RHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                   V+ VE    +V  AR+N+    + +V I R   +E       E EF R +  
Sbjct: 311 ERVGPEGLVVGVEADPQAVRDARFNL--RDLPHVSIERGRVEEVIA----ELEFGRSRPG 364

Query: 286 DI--HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH-T 340
                  R   + +DPPR+G     V  +   A   I Y+SC+  +L RDL+        
Sbjct: 365 GAREEGVRADVVVLDPPRTGAGRRVVERIAELAGRKIAYVSCDTATLARDLAYFGERGWR 424

Query: 341 IERLALFDQFPYTRHME 357
           ++ L  FD FP T H+E
Sbjct: 425 LQSLRAFDAFPMTHHVE 441


>gi|330828283|ref|YP_004391235.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Aeromonas veronii
           B565]
 gi|328803419|gb|AEB48618.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Aeromonas veronii
           B565]
          Length = 450

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 15/148 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA    +V+ +E  + ++  AR N A N + + +     +++    
Sbjct: 304 VFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL--- 360

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                    + ++         + +DPPR G D A +  +V   P  ++Y+SCNP +L R
Sbjct: 361 ---------MPELHAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLAR 411

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHME 357
           DL+ ++     ++ +   D FP++ H+E
Sbjct: 412 DLAWLVKQGFVLDEVQPVDMFPHSMHVE 439


>gi|256829391|ref|YP_003158119.1| deoxyribonuclease/rho motif-related TRAM [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578567|gb|ACU89703.1| deoxyribonuclease/rho motif-related TRAM [Desulfomicrobium
           baculatum DSM 4028]
          Length = 389

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 20/215 (9%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLE 215
           +  +   +RD V    +     L  +   ++F Q N  +N H++   + A  G +  + +
Sbjct: 190 DTGQTATERDNVLLPFSFPDFGLTLQLPPSTFFQANWALNQHLVRSTVDALHGFE-RIAD 248

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA-MR 274
           L+ G GNF+L LA     VLAVE + P+V+          + N   + + S  F  A + 
Sbjct: 249 LFSGAGNFALPLASRGKSVLAVEGSAPAVDTG--------MRNADRLALKSVTFRDANLA 300

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRS---GLDDATVGMVQAYPHILYISCNPDSLCRD 331
           +   +  ++D     +  +   +DPPR+   G+    +GM      + ++SC+  +  RD
Sbjct: 301 KPAAWKMVED-----FAPRAAILDPPRTGAKGIGRTLLGM-PGLERLAWVSCDVVNTVRD 354

Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              +L+   +I  L LFD FP T HME  ++L R 
Sbjct: 355 AKPLLAAGWSISSLTLFDMFPGTWHMEVLMILDRP 389


>gi|260682153|ref|YP_003213438.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           CD196]
 gi|260208316|emb|CBA60769.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           CD196]
          Length = 456

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           + ++ ++   RDY+ E +      L ++    SF Q N        E + +  +   GD 
Sbjct: 260 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 311

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +
Sbjct: 312 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 371

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             + ++ + +                I VDPPR G+    +  +  +    I+YISCNP 
Sbjct: 372 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 416

Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SL  DL       + I+ +   D FP T H E  V L+R+
Sbjct: 417 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 456


>gi|222528478|ref|YP_002572360.1| TrmA family RNA methyltransferase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455325|gb|ACM59587.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor bescii DSM
           6725]
          Length = 451

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 24/209 (11%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           +E + + G + I  +I N        SF Q N+     +   V+   + I  +++ ++Y 
Sbjct: 252 EEDILIWGSSTIKDKIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIVFDVYS 311

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  S+ +A    +V A+E+ + +VE A+ N   N+++N++ +  S+         E E
Sbjct: 312 GIGTISMFIAPFCKKVYAIELVRDAVEDAKKNSKNNNISNIEFICGSA---------EIE 362

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335
             +L    I     + + +DPPRSG +   +  +     P+I+Y+SCNP +L RD SIL 
Sbjct: 363 IPKLLKSGIVP---QAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILC 419

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           S  + +  +   D FP T H+EC  L  +
Sbjct: 420 SNGYEVVEVQPVDMFPQTFHVECVALFKK 448


>gi|254974048|ref|ZP_05270520.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-66c26]
 gi|255091449|ref|ZP_05320927.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           CIP 107932]
 gi|255313180|ref|ZP_05354763.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-76w55]
 gi|255515867|ref|ZP_05383543.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-97b34]
 gi|255648960|ref|ZP_05395862.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-37x79]
 gi|306519078|ref|ZP_07405425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
           QCD-32g58]
          Length = 451

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           + ++ ++   RDY+ E +      L ++    SF Q N        E + +  +   GD 
Sbjct: 255 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 306

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +
Sbjct: 307 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 366

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             + ++ + +                I VDPPR G+    +  +  +    I+YISCNP 
Sbjct: 367 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 411

Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SL  DL       + I+ +   D FP T H E  V L+R+
Sbjct: 412 SLVVDLVDFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 451


>gi|319744646|gb|EFV96993.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae
           ATCC 13813]
          Length = 468

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+    V  VE+ + +V  A+ N   N + N   V  S++     
Sbjct: 323 VIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAK 382

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ V          I YISCN  ++ R
Sbjct: 383 WLKE------------GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMAR 430

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + + ++   D FP T H+EC VLL R
Sbjct: 431 DIKLFEELGYHLVKIQPVDLFPMTHHVECVVLLQR 465


>gi|114048697|ref|YP_739247.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. MR-7]
 gi|122944423|sp|Q0HRR5|RUMB_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|113890139|gb|ABI44190.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp. MR-7]
          Length = 384

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV          L +L+CG G F L  A     +  +EI 
Sbjct: 215 KSFFQTNPQVAAKLYQTAREWV---ADFAPASLWDLFCGVGGFGLHCAAKDIPLTGIEIE 271

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     ++ V+ + + S +F +              D    + + I V+PP
Sbjct: 272 AEAIACAKMSAQLMGLDKVQFMALDSTDFAKG-------------DAAQTKPELIIVNPP 318

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ ++    +  +    ILY SCNP +L +DL  +   + + ++ LFD FP++ H E 
Sbjct: 319 RRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHIR-GYRLTKVQLFDLFPHSDHFEV 377

Query: 359 GVLLVR 364
             LLV+
Sbjct: 378 LALLVK 383


>gi|77411137|ref|ZP_00787490.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           CJB111]
 gi|77162860|gb|EAO73818.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           CJB111]
          Length = 451

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+    V  VE+ + +V  A+ N   N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ V          I YISCN  ++ R
Sbjct: 368 WLKE------------GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + + ++   D FP T H+EC  LLV+
Sbjct: 416 DIKLFEELGYHLVKIQPVDLFPMTHHVECVALLVK 450


>gi|257439482|ref|ZP_05615237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii A2-165]
 gi|257198141|gb|EEU96425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii A2-165]
          Length = 259

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 12/151 (7%)

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A H   ++ VEI   ++E+A+    AN       +   S+ F       
Sbjct: 116 YCGMGTIGLSMADHCRELIGVEIVPEAIESAK----ANAARMGDAIAAKSRFFCA--DAG 169

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSI 334
           +  ++L    +H      + +DPPR G D+AT+  +V   P  ++Y+SCNP +  RD   
Sbjct: 170 KAASQLAAEGLHP---DVVMLDPPRKGCDEATLSAVVTMSPRRVVYVSCNPSTAARDAKW 226

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L    +  E++   D FP TRH+E  V L R
Sbjct: 227 LEEHGYRAEKVQPVDLFPRTRHVEAIVSLQR 257


>gi|157150892|ref|YP_001450645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075686|gb|ABV10369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 456

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+    V  VE+   +VE ++ N A N + N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKLVKEVYGVEVIPEAVENSKKNAAINGITNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   IFVDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTVIFVDPPRKGLTESFIKASTQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LLVR
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEVVSLLVR 450


>gi|327474491|gb|EGF19896.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK408]
          Length = 456

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVHYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|331696878|ref|YP_004333117.1| deoxyribonuclease/rho motif-related TRAM [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951567|gb|AEA25264.1| deoxyribonuclease/rho motif-related TRAM [Pseudonocardia
           dioxanivorans CB1190]
          Length = 398

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 18/151 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G F+ VLA    R  AV +    VE+A   +A        + +++     +  R
Sbjct: 261 DLYGGAGLFAAVLAEQVGRDGAVTV----VESAAGAVADGEAALADLPQVA----WEVGR 312

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
            ER    L D D+       +  DPPRSGL  A V  + A     +++++C+P +L RD+
Sbjct: 313 VERVLPALADPDV-------VVADPPRSGLGRALVEAICARGPRRVVHVACDPAALGRDV 365

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLL 362
            + +   + +  L  FD FP T HMEC  LL
Sbjct: 366 GLFAALGYRLTALRAFDAFPMTHHMECVALL 396


>gi|22536806|ref|NP_687657.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|25010677|ref|NP_735072.1| hypothetical protein gbs0613 [Streptococcus agalactiae NEM316]
 gi|76788448|ref|YP_329346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae A909]
 gi|76799166|ref|ZP_00781348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae 18RS21]
 gi|77407748|ref|ZP_00784502.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
 gi|50401576|sp|Q8E0T7|Y633_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0633
 gi|50401578|sp|Q8E6F5|Y613_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0613
 gi|22533652|gb|AAM99529.1|AE014220_1 RNA methyltransferase, TrmA family [Streptococcus agalactiae
           2603V/R]
 gi|23095031|emb|CAD46257.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563505|gb|ABA46089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae A909]
 gi|76585475|gb|EAO62051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae 18RS21]
 gi|77173614|gb|EAO76729.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
          Length = 451

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+    V  VE+ + +V  A+ N   N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ V          I YISCN  ++ R
Sbjct: 368 WLKE------------GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + + ++   D FP T H+EC  LLV+
Sbjct: 416 DIKLFEELGYHLVKIQPVDLFPMTHHVECVALLVK 450


>gi|328948092|ref|YP_004365429.1| (Uracil-5)-methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328448416|gb|AEB14132.1| (Uracil-5)-methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 405

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 34/177 (19%)

Query: 195 NVHMLEWVLA-ATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           N+ +LE  +   T GI G ++L++Y G G FS+ L   F+ V+ VE  K +V  A  N+A
Sbjct: 242 NLEVLEKSIPLITGGISGKNVLDMYSGAGTFSVFLTDSFENVILVEHNKSAVVYAEQNLA 301

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---------RFKTIFVDPPRSG 303
                                ++   F    D+ +  +          F  + +DPPRSG
Sbjct: 302 G--------------------KKHESFGVSGDVWVKYHAETCIKECGNFDAVVIDPPRSG 341

Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
           ++ +    +Q    P I  +SC+P +  RD  +++++ + +E+L L D +P T H+E
Sbjct: 342 MEKSVQKWLQNSKIPQIRSLSCDPSTHARDAKALINSGYRLEKLFLLDFYPQTGHIE 398


>gi|291483116|dbj|BAI84191.1| hypothetical protein BSNT_01153 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 123

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VEI   ++E A+ N   N + N +     ++        E                 T+
Sbjct: 3   GVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE------------GITADTL 50

Query: 296 FVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPY 352
            VDPPR G D+A +  +V+  P  ++Y+SCNP +L RDL +L    +    +   D FP+
Sbjct: 51  VVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLEDGGYATREVQPVDMFPH 110

Query: 353 TRHMECGVLLVRK 365
           T H+EC VL+V+K
Sbjct: 111 TNHVECCVLIVKK 123


>gi|261821243|ref|YP_003259349.1| 23S rRNA methyluridine methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261605256|gb|ACX87742.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pectobacterium
           wasabiae WPP163]
          Length = 375

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    R+  +EI+  ++  AR +     +  V+   + S +F  
Sbjct: 236 SMWDLFCGVGGFGLHCASPEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
           A       + + D+         + V+PPR G+       +   A  +ILY SCN +S+ 
Sbjct: 296 AK------SEIPDL---------VLVNPPRRGIGSELCAYLSRMAPDYILYSSCNAESMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +D++ L+    + R+ LFD FP+T H E   LL R
Sbjct: 341 KDMTELANYRAL-RVQLFDMFPHTAHYEVLTLLKR 374


>gi|325926989|ref|ZP_08188264.1| 23S rRNA m(5)U-1939 methyltransferase family [Xanthomonas perforans
           91-118]
 gi|325542648|gb|EGD14115.1| 23S rRNA m(5)U-1939 methyltransferase family [Xanthomonas perforans
           91-118]
          Length = 444

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   +A  +    D +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 325 VEGDAGLVARAKENAQRNGLDNAQ---FHAADLTQDQRSAPWMRQ---------GFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGALEVLQQLPLKTFDRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 433 AHVESIAVFERR 444


>gi|183222798|ref|YP_001840794.1| TrmA family RNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912829|ref|YP_001964384.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777505|gb|ABZ95806.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781220|gb|ABZ99518.1| Putative RNA methyltransferase, TrmA family [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 383

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 27/228 (11%)

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
           H +K+   +  R +K KI +  D  +  + V G  L  +     F Q    IN  +LE  
Sbjct: 176 HNQKFGRSISLRLSKEKI-VQYDLEETEIEVLGTQL--KVPAKGFFQ----INQFLLETW 228

Query: 203 LAATKGI---QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           L   K +      +LEL+CG G   + L      +  +E    S++ A  N   N  N+ 
Sbjct: 229 LKKMKSLLPESSKVLELFCGCGTIGIALREKITSLYGIESHDNSIQYAIENAKRNGTNSY 288

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
           + V       T+ + +      LK       ++    V+PPRSGL    +    +  P I
Sbjct: 289 QYV-------TKDLYKGYLPKELK-------QYAIWIVNPPRSGLSKGIIDSTTKLKPKI 334

Query: 319 L-YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y SCNP +L RDL +L +  + ++ ++LFD FP T H E  V L R
Sbjct: 335 MIYSSCNPSTLQRDLRLLEAVGYRMDSMSLFDFFPRTNHYEVLVRLKR 382


>gi|297614535|gb|ADI48566.1| putative 23S rRNA 5-methyluridine methyltransferase [uncultured
           bacterium fss6]
          Length = 328

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFTQ 271
           +LELY G+GNFSL +A    +V A+E     V+  + N     VN       +     +Q
Sbjct: 187 VLELYAGSGNFSLPMALAGAQVTAIEGVASMVDQLKANAHRAQVNLAAFCTDLEQSWSSQ 246

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCR 330
           A   E              ++  + +DP R+G   A   +    P  I+Y+SC PD+L R
Sbjct: 247 AWSNE--------------QYTKVLLDPARAGAPHAIQEVATRQPQRIVYVSCAPDTLAR 292

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           D  +L  + + +++  + D FP T H+E   L  R+
Sbjct: 293 DAKVLKESGYQLKQAQVVDMFPQTHHIEVMTLFERE 328


>gi|113969161|ref|YP_732954.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. MR-4]
 gi|122944083|sp|Q0HM20|RUMB_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|113883845|gb|ABI37897.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp. MR-4]
          Length = 384

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV          L +L+CG G F L  A     +  +EI 
Sbjct: 215 KSFFQTNPQVAAKLYQTAREWV---ADFAPASLWDLFCGVGGFGLHCAAKDIPLTGIEIE 271

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     ++ V+ + + S +F +              D    + + I V+PP
Sbjct: 272 AEAIACAKMSAQLMGLDKVQFMALDSTDFAKG-------------DAAQTKPELIIVNPP 318

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ ++    +  +    ILY SCNP +L +DL  +   + + ++ LFD FP++ H E 
Sbjct: 319 RRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHIR-GYRLTKVQLFDLFPHSDHFEV 377

Query: 359 GVLLVR 364
             LLV+
Sbjct: 378 LALLVK 383


>gi|324009775|gb|EGB78994.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           57-2]
          Length = 375

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330
                E                + V+PPR G+       +    PH I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPHFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|242002062|ref|XP_002435674.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
 gi|215499010|gb|EEC08504.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
          Length = 494

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 88/197 (44%), Gaps = 31/197 (15%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
           R L +R   ++F Q N      +LE    LAA  G +  LL++ CG G   L +A    R
Sbjct: 300 RGLSFRVGPDAFFQVNTPAAEVLLEVAEDLAAL-GPRTTLLDVCCGTGTIGLCMAAKVAR 358

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  VE+ K +VE A+ N  AN + N   V              R  + + D+ +H+ R  
Sbjct: 359 VYGVEVCKRAVENAKRNAEANGIGNASFVLG------------RAEDTMHDV-MHTLRDS 405

Query: 294 ---TIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT------- 340
                 VDPPR GL +  +  ++A   I   +YISCNP+   ++   L+   +       
Sbjct: 406 EDMVAVVDPPRQGLHNKVLRALRATASIKRLVYISCNPEGALQNFLDLARPASNNYRGQP 465

Query: 341 --IERLALFDQFPYTRH 355
             + + A  D FP+T H
Sbjct: 466 FVVVKAAPVDMFPHTPH 482


>gi|325687161|gb|EGD29184.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK72]
          Length = 456

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYSPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452


>gi|321471308|gb|EFX82281.1| hypothetical protein DAPPUDRAFT_302582 [Daphnia pulex]
          Length = 463

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 22/157 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L CG G   L++ARH   V+ VE+++ +VE AR+N A N + N + +   +++  + 
Sbjct: 310 VVDLCCGTGTQGLMVARHSRGVIGVELSRSAVEDARFNAAHNQIQNAEFIAGRAEKLFKH 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDS-- 327
           +  + E +   DI         + V+P R G+D   + ++   +   +++YISC  D   
Sbjct: 370 IMEQLEVS--PDI--------AVIVNPSRGGVDKRIISLLRNNERVRNLVYISCQADGPA 419

Query: 328 ------LC-RDLSILSTTHTIERLALFDQFPYTRHME 357
                 LC R    LS    +++    D FP+T H E
Sbjct: 420 MNNFVDLCIRGRKTLSEPFVLKKATPIDLFPHTNHCE 456


>gi|320161883|ref|YP_004175108.1| putative 23S rRNA (uracil-5-)-methyltransferase [Anaerolinea
           thermophila UNI-1]
 gi|319995737|dbj|BAJ64508.1| putative 23S rRNA (uracil-5-)-methyltransferase [Anaerolinea
           thermophila UNI-1]
          Length = 409

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 23/191 (12%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLAR 229
           + V GR   +R    SF Q N  +   M++ VL+     + G +L++YCG G FS  LA 
Sbjct: 231 MEVLGRP--FRVSAGSFFQVNTPMAEAMVKHVLSLLPAERLGTVLDVYCGVGLFSAFLAP 288

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               ++ +E A  + +    N+  +  +NV +   ++++   +++   +           
Sbjct: 289 RTQNLIGIESAPSACDDFAVNL--DEFDNVSLYMGTAEQILPSLQVYPDL---------- 336

Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIERLAL 346
                I VDPPR+GL+ A +  +     P ++YISC+P +L RD   ++   + + ++  
Sbjct: 337 -----IVVDPPRAGLELAALDAILRMNAPTLIYISCDPATLARDTKRLIRGGYRLVQVTP 391

Query: 347 FDQFPYTRHME 357
           FD FP T H+E
Sbjct: 392 FDLFPQTYHIE 402


>gi|119483398|ref|ZP_01618812.1| 23S rRNA methyltransferase/RumA [Lyngbya sp. PCC 8106]
 gi|119458165|gb|EAW39287.1| 23S rRNA methyltransferase/RumA [Lyngbya sp. PCC 8106]
          Length = 466

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 36/193 (18%)

Query: 194 INVHMLEWVLAATK---GIQGD--LLELYCGNGNFSLVLARHFD------------RVLA 236
           +N    E VL   +    +QG   +++ YCG G  +L +A+H              +V+ 
Sbjct: 288 VNTEAAETVLKVIQQQLNLQGSEMIIDAYCGIGTLTLPIAKHIQLLASSPEKNSQKQVIG 347

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E+   +++ A  N   N ++NV        E     +    F+   DI         I 
Sbjct: 348 IEVQPSAIQQAYQNAGLNGIDNVTF------ETGTVQKVLSRFSLKPDI---------IL 392

Query: 297 VDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPY 352
           +DPPR G D   +  +++  P  I+Y+SC P +L RDL IL     + + ++   D FP 
Sbjct: 393 LDPPRKGCDRQVLESLLKLQPTQIVYMSCKPATLARDLKILCENGFYHLTQVQPVDFFPQ 452

Query: 353 TRHMECGVLLVRK 365
           T H+EC   L  K
Sbjct: 453 TPHVECVAFLEAK 465


>gi|325672664|ref|ZP_08152360.1| 23S rRNA methyltransferase/RumA [Rhodococcus equi ATCC 33707]
 gi|325556541|gb|EGD26207.1| 23S rRNA methyltransferase/RumA [Rhodococcus equi ATCC 33707]
          Length = 422

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 41/196 (20%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232
           G    Y Q+   + QP+AG NV    W             +LY G G F+  LA      
Sbjct: 262 GAAETYAQVVGEWAQPSAGDNV----W-------------DLYGGVGVFAATLADQVGVT 304

Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV +VE +K +V      +A     ++  VR+ S       R ER  + L   D+    
Sbjct: 305 GRVDSVEFSKQAVADGGEALA-----DLLQVRLHS------ARVERALHDLPTPDV---- 349

Query: 292 FKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
              + +DPPR+G     V  +V A P  I++I C+P S  RD+S+  +  + +E++  FD
Sbjct: 350 ---VVLDPPRTGAGREVVDTIVAAAPQRIVHIGCDPASFARDVSLFRAGGYRLEQVRAFD 406

Query: 349 QFPYTRHMECGVLLVR 364
            FP T H+E   LL R
Sbjct: 407 AFPLTHHVESLALLTR 422


>gi|330718458|ref|ZP_08313058.1| RNA methyltransferase [Leuconostoc fallax KCTC 3537]
          Length = 496

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 19/205 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           +DY++E  T+ G+T  ++    +F Q N        E  +AA      D L++ Y G G 
Sbjct: 286 QDYIEE--TILGKT--FQLSPRAFMQLNHTQMTVAYETAIAALDLKHADRLVDAYAGVGT 341

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             + LA     V  +E+   +V+ A  N   N ++N      ++++     ++E      
Sbjct: 342 IGITLADKTGEVRGMEVIPEAVDDAMINAQINGIDNATYEVGTAEQLLPQWQKE------ 395

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340
                  +    + VDPPR GL+ A    +++  P   +Y+SCNP +L RDL  LS  + 
Sbjct: 396 ------GWIADALVVDPPRPGLEPALKKEILRTKPEKFVYMSCNPSTLARDLVELSKVYR 449

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++ +   D FP T   E    L RK
Sbjct: 450 VDYIQSIDMFPQTPRWEGIAKLTRK 474


>gi|183221783|ref|YP_001839779.1| putative RNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911857|ref|YP_001963412.1| SAM-dependent methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776533|gb|ABZ94834.1| SAM-dependent methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780205|gb|ABZ98503.1| Putative RNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 439

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 15/183 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +SF QPN    + +L ++       Q +L++L+CGNG FSL+    F  V   E+ + S+
Sbjct: 268 DSFFQPNPNGFLPILNFIKDLIPQNQINLIDLFCGNGFFSLLYGDLFQHVEGYELTESSI 327

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +     IA+N  +     +  S + T         ++ ++         T+ +DPPR+G 
Sbjct: 328 Q-----IASNLFSETYPSKSHSFQVTNLFLSTETLSKKEN--------ATLILDPPRAGA 374

Query: 305 DDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
                  ++ +    + Y+SCNP S   D+S   + +      L D +P+T H E  +  
Sbjct: 375 GKLVNHWIRDFGPEFVFYVSCNPYSQKEDVSSFLSAYEYVDGILIDPYPHTPHTESVLFF 434

Query: 363 VRK 365
            RK
Sbjct: 435 RRK 437


>gi|323350973|ref|ZP_08086630.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322122697|gb|EFX94406.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 456

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYETGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRANALIVDPPRTGLDDKLLETIVRYTPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L ++ S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|294787982|ref|ZP_06753226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Simonsiella muelleri
           ATCC 29453]
 gi|294484275|gb|EFG31958.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Simonsiella muelleri
           ATCC 29453]
          Length = 435

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+CG GNF+L +AR    VL VE A    E A  N   N ++NV+    +  + T+ 
Sbjct: 291 IVDLFCGLGNFTLPIARSGAMVLGVEGADFLTERAANNARENGLHNVQFRTANLFDVTEQ 350

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                       I+   Y F  + +DPPR+G       + + Y    I+Y+SCNP +  R
Sbjct: 351 F-----------IESLGY-FDKMLLDPPRAGAYAVVQALQRPYLPKRIVYVSCNPATFAR 398

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           D ++L    +    + + + FP+T H+E 
Sbjct: 399 DAAVLVDKGYRFRAVGVMNLFPHTAHVEA 427


>gi|227112030|ref|ZP_03825686.1| 23S rRNA methyluridine methyltransferase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 377

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 18/156 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    R+  +EI+  ++  AR +     +  V+   + S +F  
Sbjct: 236 SMWDLFCGVGGFGLHCASSEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
           A         + D+         + V+PPR G+       +   A  +ILY SCN +S+ 
Sbjct: 296 AK------AEIPDL---------VLVNPPRRGIGSELCAYLSRMAPDYILYSSCNAESMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +D++ L T +   R+ LFD FP+T H E   LL R+
Sbjct: 341 KDMTEL-TNYRALRVQLFDMFPHTAHYEVLTLLKRE 375


>gi|294793541|ref|ZP_06758678.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp.
           3_1_44]
 gi|294455111|gb|EFG23483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp.
           3_1_44]
          Length = 458

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 151/386 (39%), Gaps = 60/386 (15%)

Query: 10  YEQQLAEKVDRLRQMM--LAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDL---YHI 61
           YE QL+ K  +++ ++  +  Q P L    +   +P  YR + +  +     D+   ++ 
Sbjct: 92  YEGQLSLKTQKVKDVIERIGHQNPELVKPALGPKDPWAYRNKMQMPVGGTKGDILMGFYA 151

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M      +         G+ +I     ++   + +EP               + + ++  
Sbjct: 152 MGSHDIVQGTNCPIQDEGNNIIAQACYQIAKELDVEPY-----------DEHTGKGVLRH 200

Query: 122 IYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGR------------ANKTKICLDRD--- 165
           I  R+    W    +   D L H  K+   L  R              +T + L      
Sbjct: 201 IIGRIGQSGWMVILVTATDNLPHQEKWVKNLTERVPQVETIVHNVNGKRTNVILGPKNRI 260

Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGN 222
            Y D  +T   + L +    +SF Q N      + +  L  A  KG +  +++ YCG G 
Sbjct: 261 LYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALKYANLKG-EETVIDAYCGTGT 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMRREREFNR 281
            SL LA     V+ +EI +P++  AR N   N  +N + IV  ++ E  +  +       
Sbjct: 320 ISLFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAAVEMPKLYKA------ 373

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDD----ATVGMVQAYPHILYISCNPDSLCRDLSILS- 336
                    R   I  DP R+G       +  GM      I+Y+SCNP ++ RD+ IL+ 
Sbjct: 374 -------GVRPDVIVFDPIRAGCKKEVLTSAAGMEPK--RIVYVSCNPATMARDIEILTH 424

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + ++ +   D FP T H+E   LL
Sbjct: 425 YGYELQEVQPVDMFPMTAHVEAVALL 450


>gi|23822135|sp|Q8PMU6|RUMA_XANAC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 444

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   +A  +    D +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 325 VEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 433 AHVESIAVFERR 444


>gi|294668410|ref|ZP_06733513.1| hypothetical protein NEIELOOT_00328 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309728|gb|EFE50971.1| hypothetical protein NEIELOOT_00328 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 445

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 23/181 (12%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ NA +N  M++  +   +   G+ + +L+CG GNF+L +AR   +VL VE     
Sbjct: 273 GGFTQVNAKLNNLMVKRAMDLLQPSPGERIADLFCGLGNFTLPIARSGAQVLGVEGLPDL 332

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY----RFKTIFVDP 299
           V  A+ N  ANH       R++                L  ++  ++        + +DP
Sbjct: 333 VNRAKQNAVANHCQGYVDFRVAD---------------LFKVNPSAWDDWCNVDKVLLDP 377

Query: 300 PRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           PR+G       + QA     I+Y+SCNP +  RD ++L    +    L + + F  T H+
Sbjct: 378 PRTGAHAVIEMLTQARRLQRIVYVSCNPATFVRDAALLVGKGYRFRLLGVMNLFSQTAHI 437

Query: 357 E 357
           E
Sbjct: 438 E 438


>gi|82703334|ref|YP_412900.1| 23S rRNA 5-methyluridine methyltransferase [Nitrosospira
           multiformis ATCC 25196]
 gi|91207805|sp|Q2Y6W3|RUMA_NITMU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|82411399|gb|ABB75508.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 439

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 21/181 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ N  +N  ++   L      +G+ + +L+CG GNF+L +AR   +V+  E +   
Sbjct: 260 TEFTQVNPMVNRILVRRALNLLDPRRGERIADLFCGLGNFTLPVARRGAQVVGYEGSAAL 319

Query: 244 VEAARYNIAANHV-NNVKIVRMSSKEFTQA-MRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           V  AR N   N +  + + +  +  E  ++ MR + +F+++              +DPPR
Sbjct: 320 VSRARQNSQRNGLAGSTRFMEANLFEIDESWMREQGDFDKM-------------LIDPPR 366

Query: 302 SGLDDATVGM--VQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHM 356
            G       +   Q  P  I+Y+SCNP +L RD S+L     + ++   + + FP+T H+
Sbjct: 367 EGAVAVVTALEEKQLKPWRIVYVSCNPATLARDASVLVHRNGYALKAAGVINMFPHTAHV 426

Query: 357 E 357
           E
Sbjct: 427 E 427


>gi|323127600|gb|ADX24897.1| tRNA (uracil-5-)-methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 543

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 16/183 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 280 SFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 339

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N A N + NV  V  +++       +E              +   I VDPPR GL
Sbjct: 340 KDAQQNAARNGITNVHFVADTAENAMATWAKE------------GIKPSVILVDPPRKGL 387

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+E   L
Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQPVDLFPQTHHVETVAL 447

Query: 362 LVR 364
           L +
Sbjct: 448 LSK 450


>gi|290473965|ref|YP_003466839.1| putative tRNA (uracil-5-)-methyltransferase with
           S-adenosyl-L-methionine-dependent methyltransferase
           domain [Xenorhabdus bovienii SS-2004]
 gi|289173272|emb|CBJ80047.1| putative tRNA (uracil-5-)-methyltransferase with
           S-adenosyl-L-methionine-dependent methyltransferase
           domain [Xenorhabdus bovienii SS-2004]
          Length = 377

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 18/154 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    R+  +EI+  ++  A+ +  +  +  V+   + S  F  
Sbjct: 236 SMWDLFCGAGGFGLHCADKETRLTGIEISAEAIACAKNSAKSLGLEQVEFQALDSTHFAL 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
              +  E                + V+PPR G+  A    +   A   ILY SCN +++ 
Sbjct: 296 DKAQLPEL---------------VLVNPPRRGIGKALCEYLSRMAPKFILYSSCNAETMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D++ L   + IE++ LFD FP+T H E   LL+
Sbjct: 341 KDIAALEQ-YRIEKVQLFDMFPHTEHYETLALLI 373


>gi|270308325|ref|YP_003330383.1| RNA methyltransferase, TrmA family [Dehalococcoides sp. VS]
 gi|270154217|gb|ACZ62055.1| RNA methyltransferase, TrmA family [Dehalococcoides sp. VS]
          Length = 400

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 84/156 (53%), Gaps = 20/156 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G F+++L+    RV+A+E +  +V+ A+ NI+   ++N+++++  +++    
Sbjct: 261 LVDAYAGVGTFAVLLSPDCKRVIAIEESAAAVKDAKLNISG--IDNIELIQSKTEDV--- 315

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                  NR ++      +   + +DP RSG   + +  +   P  +++Y++C+P SL R
Sbjct: 316 ------INRFEE------QMDALILDPSRSGAHPSVLATICQNPPRNLVYVACDPSSLAR 363

Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL I L+    + ++   D FP T H+E   LL  K
Sbjct: 364 DLKILLAGPFELSQVIPVDMFPQTYHVETLALLKCK 399


>gi|119479021|ref|XP_001259539.1| tRNA(m5U54)methyltransferase [Neosartorya fischeri NRRL 181]
 gi|119407693|gb|EAW17642.1| tRNA(m5U54)methyltransferase [Neosartorya fischeri NRRL 181]
          Length = 531

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 113/266 (42%), Gaps = 44/266 (16%)

Query: 132 RECAIRL-RDALHARKYQIQLIGRANKTK-----ICLDRD-YVDERLTVAGRTL------ 178
           RE   R+ +D+  A    +Q  G           I ++RD Y++E+  V           
Sbjct: 275 RESTRRIPKDSAEAEAGAVQKEGENPPESESGDVIRIERDNYIEEKRCVTDNNATSVEYI 334

Query: 179 ---IYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD------LLELYCGNGNFSLVL 227
              I+     +F Q N  I     E++   A  KG + D      LL+ Y G+G F++ L
Sbjct: 335 DDYIFTNKAGAFFQNNNSILSGFTEYIRQHAFPKGNEQDPKPIKYLLDAYSGSGLFTITL 394

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           +  F   L V++A  S+ +AR N  AN++ N       +    + +    E   L     
Sbjct: 395 SPLFKSSLGVDVAADSIASARENARANNLPNTGFAAADAATLFKNVPYPPEQTLL----- 449

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-----STTHT 340
                    +DPPR G  D  +  +  Y    ++Y+SCN  +  RD++++     ++ + 
Sbjct: 450 --------VIDPPRKGCSDDFLRQLLTYGPRRVVYVSCNVHTQARDVAVMVQGDMNSRYE 501

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           IE +  FD FP T H+E   +L + P
Sbjct: 502 IESIRGFDFFPQTGHVEGVAILNKVP 527


>gi|319941518|ref|ZP_08015845.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804992|gb|EFW01831.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Sutterella
           wadsworthensis 3_1_45B]
          Length = 491

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 15/187 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           FTQ N  +N  M+   +    G++ D  + + +CG GNF+L LAR   RV+ +E ++  V
Sbjct: 279 FTQVNHALNETMVGRAVRLL-GLEPDHKVADFFCGLGNFTLPLARCSQRVIGIEGSEGLV 337

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG- 303
             AR   A N +      R  +         E  +  +  ID        + +DPPR G 
Sbjct: 338 ARARQGAAENGLAEKTTFRARNLFTWSEQDWEELWQTMGGID-------RVLIDPPREGA 390

Query: 304 -LDDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHT--IERLALFDQFPYTRHMECG 359
                 +   +  P  ++Y+SCNP +L RD +IL       I    + + FP+T H+E  
Sbjct: 391 LALARVLAATEKRPARVVYVSCNPATLARDCAILQHEGGWHIRAAGIMNMFPHTGHVESI 450

Query: 360 VLLVRKP 366
            +L   P
Sbjct: 451 AVLEPGP 457


>gi|309805272|ref|ZP_07699324.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165506|gb|EFO67737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 09V1-c]
          Length = 361

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    
Sbjct: 218 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 277

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M+++                  + VDPPR+GL+   V  ++   P   +YISCNP +L R
Sbjct: 278 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 325

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 326 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 361


>gi|242208408|ref|XP_002470055.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730955|gb|EED84805.1| predicted protein [Postia placenta Mad-698-R]
          Length = 445

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 32/230 (13%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT-----K 207
           G A +  +C+       R  V   T  Y  I  SF Q N  + + +  +V  A       
Sbjct: 228 GHAVEKHVCITDHKATVRERVGDNTFEY--IAGSFFQNNNSVLLPLTSYVRDAIFAHHQS 285

Query: 208 GIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           G         L++ YCG+G F++ LAR F +V  +E+++ S+  A  N   N +   +  
Sbjct: 286 GPTAPPRPTHLVDAYCGSGLFAITLARSFQKVAGIELSEDSIRCATRNAQLNDIPPDQCS 345

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILY 320
            MS  +        ++F R + +         + +DPPR G D+  +  +  +    ++Y
Sbjct: 346 FMSG-DAANIFATVQDFPRDQTV---------LIIDPPRKGTDEKFIDQLLEFQGALVVY 395

Query: 321 ISCNPDSLCRDLSIL--------STTHTIERLALFDQFPYTRHMECGVLL 362
           +SCN  +  RD+  +           + +E L  FD FP T H+E   +L
Sbjct: 396 VSCNVHTQARDVGTILRKSEASGGRRYVMESLVGFDLFPQTAHVESVAVL 445


>gi|309803238|ref|ZP_07697335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164746|gb|EFO66996.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 11V1-d]
          Length = 361

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    
Sbjct: 218 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 277

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M+++                  + VDPPR+GL+   V  ++   P   +YISCNP +L R
Sbjct: 278 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 325

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 326 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 361


>gi|194397238|ref|YP_002037663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae G54]
 gi|194356905|gb|ACF55353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae G54]
          Length = 543

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|149006286|ref|ZP_01829998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP18-BS74]
 gi|307127423|ref|YP_003879454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 670-6B]
 gi|147762063|gb|EDK69025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP18-BS74]
 gi|306484485|gb|ADM91354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 670-6B]
          Length = 543

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|21242082|ref|NP_641664.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21107489|gb|AAM36200.1| RNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 451

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   +A  +    D +L+L+CG GNF+L LAR    V+ 
Sbjct: 274 LAFRPLD--FIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVG 331

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 332 VEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDKLL 379

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 380 LDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 439

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 440 AHVESIAVFERR 451


>gi|301154691|emb|CBW14154.1| 23S rRNA m(5)U747 methyltransferase [Haemophilus parainfluenzae
           T3T1]
          Length = 391

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 31/182 (17%)

Query: 193 GINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFD-------RVLAVEIAKPS 243
           G+     +WV  L  TK     L +L+CG G F L  A+           ++ +EI+  +
Sbjct: 226 GLYATAQDWVQDLPITK-----LWDLFCGVGGFGLHCAKALQDKHQQEVELIGIEISPSA 280

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++AA  +     +NNVK   + +  F  A    +                 + V+PPR G
Sbjct: 281 IQAATQSAQVLGLNNVKFQSLDAANFALAQDENKP--------------DLVIVNPPRRG 326

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +       + +  PH ILY SCN  S+ +DL  L T + + ++ LFD FP+T H E  +L
Sbjct: 327 IGKELAEFLNEMQPHFILYSSCNAVSMGKDLQHL-TNYKLTQIQLFDMFPHTAHYEVLLL 385

Query: 362 LV 363
           L 
Sbjct: 386 LT 387


>gi|229552631|ref|ZP_04441356.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258540007|ref|YP_003174506.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|229314002|gb|EEN79975.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151683|emb|CAR90655.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 455

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 27/218 (12%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-----GI 209
             ++++   + Y+ E  T++GRT  ++    +F Q    +N    E + A  K       
Sbjct: 258 GKESRLLAGQPYIQE--TLSGRT--FQLSPQAFLQ----LNPKQTEQLYAIAKDALQLAP 309

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG G   + LA     +  ++    ++  A+ N   N  NN           
Sbjct: 310 DDTLIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKDNAKNNGFNNTHYF------- 362

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327
               + E  F +     IH      + VDPPRSGL+   +  ++Q  P    YISCNP +
Sbjct: 363 --VGKAETLFPKWLKEGIHP---NAVIVDPPRSGLERPFIDALLQLNPQKFAYISCNPST 417

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L RDL  L+  + ++ +   D FP T   E  V   R+
Sbjct: 418 LARDLVPLAKHYQVDWIQSIDMFPQTARCEAVVKFTRR 455


>gi|324112659|gb|EGC06635.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia fergusonii
           B253]
          Length = 375

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  LS  + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELSG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|188577277|ref|YP_001914206.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521729|gb|ACD59674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 418

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 241 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 298

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 299 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDKLL 346

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 347 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 406

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 407 AHVESIAVFERR 418


>gi|303270015|ref|ZP_07355742.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS458]
 gi|302640448|gb|EFL70868.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS458]
          Length = 446

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 14/150 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGV 360
           DL  L   + +  +   D FP+T   E  V
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEAVV 445


>gi|295670283|ref|XP_002795689.1| tRNA (uracil-5-)-methyltransferase [Paracoccidioides brasiliensis
           Pb01]
 gi|226284774|gb|EEH40340.1| tRNA (uracil-5-)-methyltransferase [Paracoccidioides brasiliensis
           Pb01]
          Length = 549

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 25/164 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L V+IA  S+EAAR N  AN++ N       +      
Sbjct: 365 LLDAYSGSGLFTVTLSPLFLSSLGVDIAPQSIEAARKNARANNLPNTGFAAADAAAI--- 421

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+     +   + +DPPR G D+  +  +  Y    ++Y+SCN  +  R
Sbjct: 422 ---------FKDVPYPPEK-TLLVIDPPRKGCDNNFLQQLLWYGPARVVYVSCNVHTQAR 471

Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +L            + IE +  FD FP T H+E GV ++ K
Sbjct: 472 DVGVLVQGANVKGEEVRYKIESIKGFDFFPQTGHVE-GVAILNK 514


>gi|282898476|ref|ZP_06306466.1| 23S rRNA methyltransferase/RumA [Raphidiopsis brookii D9]
 gi|281196642|gb|EFA71548.1| 23S rRNA methyltransferase/RumA [Raphidiopsis brookii D9]
          Length = 453

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 23/170 (13%)

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V+ +   +QGD  L++ YCG G  +L LA+   + + +EI   +VE A  N   N + N 
Sbjct: 300 VIQSQLNLQGDEILVDAYCGIGTLTLPLAKQARQTIGLEIQPAAVEQAICNAQHNGIINA 359

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDI-DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH 317
           K          Q    E    +L+ + DI       + +DPPR G +   +  +++  P 
Sbjct: 360 KF---------QIGAVEDILPKLETVPDI-------VLLDPPRKGCESIVLESLLKLKPK 403

Query: 318 -ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
            I YISC   +L RDLS+L  S+ + ++++   D FP+T H+E    L R
Sbjct: 404 KIAYISCKASTLARDLSLLCASSEYKLKKVQPADFFPHTPHVETVAFLER 453


>gi|226294037|gb|EEH49457.1| tRNA (uracil-5-)-methyltransferase [Paracoccidioides brasiliensis
           Pb18]
          Length = 550

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 25/164 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L ++IA  S+EAAR N  AN++ N       +      
Sbjct: 365 LLDAYSGSGLFTVTLSPLFLSSLGIDIAPQSIEAARKNARANNLPNTGFAAADAATI--- 421

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+     +   + +DPPR G D+  +  +  Y    ++Y+SCN  +  R
Sbjct: 422 ---------FKDVPYPPEK-TLLVIDPPRKGCDNNFLQQLLWYGPARVVYVSCNVHTQAR 471

Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +L            + IE +  FD FP T H+E GV ++ K
Sbjct: 472 DVGVLVQGANVKGEEVRYEIESIKGFDFFPQTGHVE-GVAILNK 514


>gi|70997497|ref|XP_753495.1| tRNA(m5U54)methyltransferase [Aspergillus fumigatus Af293]
 gi|66851131|gb|EAL91457.1| tRNA(m5U54)methyltransferase [Aspergillus fumigatus Af293]
 gi|159126776|gb|EDP51892.1| tRNA(m5U54)methyltransferase [Aspergillus fumigatus A1163]
          Length = 578

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 91/203 (44%), Gaps = 28/203 (13%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD------LLELYCGNGNFSLVLARH 230
           I+     +F Q N  I     E++   A  KG + D      LL+ Y G+G F++ L+  
Sbjct: 385 IFTNKAGAFFQNNNSILSGFTEYIRQHAFPKGNEQDPKPIKYLLDAYSGSGLFTITLSPL 444

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           F   L V++A  S+ +AR N  AN++ N       +    + +    E   L        
Sbjct: 445 FKSSLGVDVAADSIASARENARANNLPNTGFAAADAATLFKNVPYPPEQTLL-------- 496

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-----STTHTIER 343
                 +DPPR G  D  +  +  Y    ++Y+SCN  +  RD++++     ++ + IE 
Sbjct: 497 -----VIDPPRKGCSDDFLRQLLTYGPRRVVYVSCNVHTQARDVAVMVQGDMNSRYEIES 551

Query: 344 LALFDQFPYTRHMECGVLLVRKP 366
           +  FD FP T H+E   +L + P
Sbjct: 552 IRGFDFFPQTGHVEGVAILNKVP 574


>gi|167562543|ref|ZP_02355459.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           oklahomensis EO147]
 gi|167569726|ref|ZP_02362600.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           oklahomensis C6786]
          Length = 465

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 26/191 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRGDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTS 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F  + +DPPR G  
Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKVLIDPPREGAL 395

Query: 304 --------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353
                   +  + VG + A   I+Y+SCNP +L RD  +L     + ++   + + FP+T
Sbjct: 396 AVSKALAEIAQSGVGPLPA--RIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHT 453

Query: 354 RHMECGVLLVR 364
            H+E   L  R
Sbjct: 454 SHVESIALFER 464


>gi|84367352|dbj|BAE68510.1| RNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 418

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 241 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 298

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 299 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDKLL 346

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 347 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 406

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 407 AHVESIAVFERR 418


>gi|309806433|ref|ZP_07700441.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167186|gb|EFO69357.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           iners LactinV 03V1-b]
          Length = 306

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    
Sbjct: 163 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 222

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M+++                  + VDPPR+GL+   V  ++   P   +YISCNP +L R
Sbjct: 223 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 270

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 271 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 306


>gi|303265405|ref|ZP_07351310.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS397]
 gi|302645057|gb|EFL75299.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS397]
          Length = 431

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 14/150 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 293 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 352

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 353 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 400

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGV 360
           DL  L   + +  +   D FP+T   E  V
Sbjct: 401 DLVRLVEVYDLHYIQSVDMFPHTARTEAVV 430


>gi|209525609|ref|ZP_03274147.1| RNA methyltransferase, TrmA family [Arthrospira maxima CS-328]
 gi|209493942|gb|EDZ94259.1| RNA methyltransferase, TrmA family [Arthrospira maxima CS-328]
          Length = 509

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 32/187 (17%)

Query: 194 INVHMLEWVLAATKG---IQGD--LLELYCGNGNFSLVLARHFD--------RVLAVEIA 240
           +N    E +L+A      +QG   L++ YCG G F+L LA+           R + +E  
Sbjct: 335 VNTEAAESLLSAISSELNLQGHEILVDAYCGIGTFTLPLAKQLGQNFPPGEIRAIGLESQ 394

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +VE A  N   N +N+V        EF       R  N  K +    ++   + +DPP
Sbjct: 395 AGAVEQAISNADLNDINHV--------EF-------RVGNVQKLLPEIPFQPDIVVLDPP 439

Query: 301 RSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHM 356
           R G D   +  ++   P  I+YISC P +L RDL +L  +  + + ++   D FP T H+
Sbjct: 440 RQGCDRTVIQTLLNLQPQRIVYISCRPVTLARDLQLLCENGIYQLTKVQPADFFPQTSHV 499

Query: 357 ECGVLLV 363
           EC   L 
Sbjct: 500 ECAAFLT 506


>gi|332638388|ref|ZP_08417251.1| RNA methyltransferase [Weissella cibaria KACC 11862]
          Length = 496

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 19/211 (9%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
           TK+    +Y+ E  T+ G+T  ++    +F Q N      +    ++A    Q D L++ 
Sbjct: 300 TKLLWGSEYITE--TINGKT--FKLSPRAFLQLNPRQTQRLYNEAISALDLTQADKLIDA 355

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G   + LA H   V  ++    +++ A  N   N V N      ++++       E
Sbjct: 356 YSGVGTIGITLADHAGEVRGMDTVPEAIDDANENALDNGVKNAAYYTGAAEDLIPRWANE 415

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYP-HILYISCNPDSLCRDLSI 334
                        +    + VDPPR+GLD+   + ++   P   +Y+SCN  +L RDL  
Sbjct: 416 ------------GWVADALVVDPPRTGLDEELRLTILDTQPDKFVYVSCNASTLARDLVD 463

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L+  + +E +   D FP T   E  V   +K
Sbjct: 464 LTRVYNVEYIQSIDMFPQTARWEGIVKFTKK 494


>gi|323976756|gb|EGB71844.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TW10509]
          Length = 375

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  LS  + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELSG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|16125575|ref|NP_420139.1| RNA methyltransferase [Caulobacter crescentus CB15]
 gi|221234324|ref|YP_002516760.1| tRNA (uracil-5-)-methyltransferase [Caulobacter crescentus NA1000]
 gi|50401664|sp|Q9A8M7|Y1326_CAUCR RecName: Full=Uncharacterized RNA methyltransferase CC_1326
 gi|13422671|gb|AAK23307.1| RNA methyltransferase, TrmA family [Caulobacter crescentus CB15]
 gi|220963496|gb|ACL94852.1| tRNA (uracil-5-)-methyltransferase [Caulobacter crescentus NA1000]
          Length = 415

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 29/203 (14%)

Query: 170 RLTVAGRTL-------------IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           R+T+AG T+             +      SF Q        M+E  +A  +G    + +L
Sbjct: 220 RVTLAGETIYGARQPLVKLGQAVVALPPGSFLQAVPAAEKAMVELAVAEAQGAS-RVADL 278

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G F+  LA    +V A E++ P++ A +  I       +K +   +++    +RR 
Sbjct: 279 YCGVGTFTFPLA-EVAQVYAAEMSAPAITALKAAI--GGAPGLKPITAEARDL---VRRP 332

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL 335
                L   D+       + +DPPR+G  + TV + ++    +L +SCNP +  +D  +L
Sbjct: 333 VLSTELAKTDV-------VVIDPPRAGAAEQTVEIAKSKVAKVLGVSCNPQTFAKDARVL 385

Query: 336 -STTHTIERLALFDQFPYTRHME 357
                 + R+   DQF ++ H+E
Sbjct: 386 VDAGFKLVRVTPVDQFVWSPHIE 408


>gi|241895890|ref|ZP_04783186.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|241870933|gb|EER74684.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 458

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 27/192 (14%)

Query: 185 NSFTQPNAGINVHMLE--WVLAATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           NSF Q    +N    E  + LAA K        +++ Y G G   L +A    +VL VE+
Sbjct: 284 NSFYQ----VNPQTTEVLYALAARKAELKPTDTVIDAYSGIGTIGLTVASQVKQVLGVEV 339

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            + +V  A+ N+  N V N   +   +           + +R +   +H+     IFVDP
Sbjct: 340 IERAVIDAQKNVMNNQVKNATFITADAPA---------QMHRWQQEGLHA---NVIFVDP 387

Query: 300 PRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
           PR GL +  +  V +  P   +Y+SCNP ++ RD   L     H    +   DQFP T H
Sbjct: 388 PRRGLTNELLDAVTEMRPDRFVYVSCNPATMARDAKYLIEQGFHIKGDVQPLDQFPQTAH 447

Query: 356 MECGVLLVRKPS 367
           +E  V+ V +P+
Sbjct: 448 VE--VVTVFEPN 457


>gi|94992657|ref|YP_600756.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94546165|gb|ABF36212.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 464

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 16/186 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 291 SFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 351 RDAQQNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I+YISCNP ++ RD+       + + ++   D FP T H+E  VL
Sbjct: 399 TESFIQASVAMGPQKIIYISCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVETIVL 458

Query: 362 LVRKPS 367
           + +K S
Sbjct: 459 IQKKNS 464


>gi|309810186|ref|ZP_07704031.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           iners SPIN 2503V10-D]
 gi|315653660|ref|ZP_07906580.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC
           55195]
 gi|308169458|gb|EFO71506.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           iners SPIN 2503V10-D]
 gi|315489022|gb|EFU78664.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC
           55195]
          Length = 355

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    
Sbjct: 212 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 271

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M+++                  + VDPPR+GL+   V  ++   P   +YISCNP +L R
Sbjct: 272 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 319

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 320 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 355


>gi|225854529|ref|YP_002736041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae JJA]
 gi|225722765|gb|ACO18618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae JJA]
          Length = 543

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|324991264|gb|EGC23197.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK353]
          Length = 456

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDNKLLETIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L +K S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452


>gi|300722504|ref|YP_003711794.1| putative tRNA (uracil-5-)-methyltransferase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629011|emb|CBJ89596.1| putative tRNA (uracil-5-)-methyltransferase with
           S-adenosyl-L-methionine-dependent methyltransferase
           domain [Xenorhabdus nematophila ATCC 19061]
          Length = 375

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +L+CG G F L  A    ++  +EI+  +++ A+ +  +  + +V+   + S  F 
Sbjct: 235 SSMWDLFCGAGGFGLHCADKETKLTGIEISAEAIDCAKSSAKSLGLKSVEFQALDSTHFA 294

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328
               +  E                + V+PPR G+       +   A   +LY SCN +++
Sbjct: 295 LEKAKIPEL---------------VLVNPPRRGIGKELCEYLSRMAPKFVLYSSCNAETM 339

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
            +D+++L   + IE++ LFD FP+T H E   LL+
Sbjct: 340 AKDIAMLKQ-YRIEKVQLFDMFPHTEHYETLALLI 373


>gi|225684394|gb|EEH22678.1| tRNA(m5U54)methyltransferase [Paracoccidioides brasiliensis Pb03]
          Length = 573

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 25/164 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L ++IA  S+EAAR N  AN++ N       +      
Sbjct: 388 LLDAYSGSGLFTVTLSPLFLSSLGIDIAPQSIEAARKNARANNLPNTGFAAADAATI--- 444

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+     +   + +DPPR G D+  +  +  Y    ++Y+SCN  +  R
Sbjct: 445 ---------FKDVPYPPEK-TLLVIDPPRKGCDNNFLQQLLWYGPARVVYVSCNVHTQAR 494

Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +L            + IE +  FD FP T H+E GV ++ K
Sbjct: 495 DVGVLVQGANVKGEEVRYEIESIKGFDFFPQTGHVE-GVAILNK 537


>gi|323967294|gb|EGB62717.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M863]
 gi|327253646|gb|EGE65275.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           STEC_7v]
          Length = 375

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  LS  + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELSG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|225856683|ref|YP_002738194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae P1031]
 gi|225725093|gb|ACO20945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae P1031]
          Length = 543

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|15902976|ref|NP_358526.1| hypothetical protein spr0932 [Streptococcus pneumoniae R6]
 gi|116515807|ref|YP_816392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae D39]
 gi|149019625|ref|ZP_01834944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483100|ref|ZP_02708052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1873-00]
 gi|50401573|sp|Q8DPY7|Y932_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr0932
 gi|15458541|gb|AAK99736.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076383|gb|ABJ54103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae D39]
 gi|147931000|gb|EDK81980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043444|gb|EDT51490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1873-00]
          Length = 543

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|327283217|ref|XP_003226338.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
           [Anolis carolinensis]
          Length = 631

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 165/430 (38%), Gaps = 110/430 (25%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ------------------------VPNLQIFRSEPIH--Y 43
           YE+QLA+K     Q++L                              L+  +S P+   Y
Sbjct: 185 YEEQLAKKKQECEQVLLKLTRELGNNNRALLPWLFLQKEKYSGLCSPLEGVKSSPLQTEY 244

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLR- 101
           R + EF        L  I  +Q+ K    R+  +  G+  +    +E   TI +  +++ 
Sbjct: 245 RNKCEF--------LIGIGLNQEDKTVGFRLGKYKGGTCAV----VEPFETIHIPAVVKK 292

Query: 102 -AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANK 157
            AK FQ DY+ S          Y    +  WR+  +R+   +D +    +  Q + +   
Sbjct: 293 VAKAFQ-DYIRSTPYNVYSPETY----EGHWRQLTVRISRNQDIMAIVYFNPQKVSKEGL 347

Query: 158 TKI--CLDRDYVDERLTVAGRTLIYRQIENSFTQPN---------AG------------- 193
           T++   + + +++     +G T +Y   E     PN         AG             
Sbjct: 348 TELQTSVAKYFMEGAGKESGITSLYFVEEGQKKSPNREDLALEHVAGNKYIYEDLLGMRF 407

Query: 194 ---------INVHMLEWVLAATK-----GIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
                    +N    E + +A +     G +  +L++ CG G   + LA+   +V+ +E+
Sbjct: 408 RISPHAFFQVNTQAAEVLYSAIQDWAQVGPETTVLDVCCGTGTIGITLAKKVKKVIGIEL 467

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            + +VE A+ N   N +NNV+     +++    +           ++  + +     VDP
Sbjct: 468 CQEAVEDAKVNAQLNDLNNVEFYCGKAEDLVPQL-----------VNSLALQNCITVVDP 516

Query: 300 PRSGLDDATVGMVQAYPH---ILYISCNPDS-------LCRDLS--ILSTTHTIERLALF 347
           PR+GL    +  ++   H   ++Y+SCNP +       LCR  S  +        R    
Sbjct: 517 PRAGLHSKVILAIRKSEHLKKLIYVSCNPRAAMNNFIDLCRAPSNRVKGGPFRPVRAMAV 576

Query: 348 DQFPYTRHME 357
           D FP+T H E
Sbjct: 577 DLFPHTMHYE 586


>gi|162319803|ref|YP_450784.2| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|91207816|sp|Q2P4L7|RUMA_XANOM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 444

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 325 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 433 AHVESIAVFERR 444


>gi|289662803|ref|ZP_06484384.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 444

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N + N +     + + TQ  R         +       F  + 
Sbjct: 325 VEGDAGLVARAKDNAQRNGLENAQFY---AADLTQDQR---------NTPWMRQGFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 433 AHVESIAVFERR 444


>gi|160935446|ref|ZP_02082828.1| hypothetical protein CLOBOL_00341 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441804|gb|EDP19504.1| hypothetical protein CLOBOL_00341 [Clostridium bolteae ATCC
           BAA-613]
          Length = 553

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 20/189 (10%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237
           +R    SF Q N  +   +L     +  G+ G   +++ YCG G   ++ ++   +V+ V
Sbjct: 374 FRISSKSFYQVNP-VQTEILYEKALSLAGLTGQELVVDAYCGIGTIGIIASKAAGKVIGV 432

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+ + +V  A  N   N + N++     +  F   M  + E            +   + +
Sbjct: 433 ELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNMAEQGE------------KADVVIM 480

Query: 298 DPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           DPPRSG  +     VG + A   ++Y+SCNP++L RD+  +    +      L D FP T
Sbjct: 481 DPPRSGSTEEFMDAVGKLGA-EKVVYVSCNPETLARDVRYMKKMGYRAAEAWLVDMFPGT 539

Query: 354 RHMECGVLL 362
            H E  VLL
Sbjct: 540 VHTESIVLL 548


>gi|225861011|ref|YP_002742520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230452|ref|ZP_06964133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255322|ref|ZP_06978908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502952|ref|YP_003724892.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225726771|gb|ACO22622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238547|gb|ADI69678.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|332201499|gb|EGJ15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA47368]
          Length = 543

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|168487479|ref|ZP_02711987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569696|gb|EDT90224.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1087-00]
          Length = 543

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|148984983|ref|ZP_01818226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922681|gb|EDK73798.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799994|emb|CBW32584.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
          Length = 543

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|91207817|sp|Q5H1Q8|RUMA_XANOR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 444

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 325 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 433 AHVESIAVFERR 444


>gi|168494457|ref|ZP_02718600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575617|gb|EDT96145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC3059-06]
 gi|332075376|gb|EGI85845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA41301]
          Length = 543

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|78486531|ref|YP_392456.1| RNA methyltransferase [Thiomicrospira crunogena XCL-2]
 gi|78364817|gb|ABB42782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thiomicrospira
           crunogena XCL-2]
          Length = 407

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 28/189 (14%)

Query: 186 SFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            F Q NA +N  M    L+W L   K  +  +L+L+CG GNF+L +A+    V+ +E   
Sbjct: 222 GFVQVNAEMNEQMVNKALDW-LDLNK--EQRVLDLFCGVGNFTLPIAQQVKEVVGIEGET 278

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY----RFKTIFV 297
             V+ A++N +  H             F QA       +  KD+   ++    ++  + +
Sbjct: 279 DLVQMAQHNASRAHCEQAT--------FYQA-------DLFKDVTPQNWFRKQKYDRVLL 323

Query: 298 DPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRH 355
           DP R G      G+ Q     I+Y+SCN  +L RD+  L    + +++  + D FP+T H
Sbjct: 324 DPGRQGAYQLCKGLGQLKADKIVYVSCNASTLIRDVKELEKQGYQLKKAIMVDMFPHTSH 383

Query: 356 MECGVLLVR 364
            E    L++
Sbjct: 384 TEVMAQLIK 392


>gi|50121596|ref|YP_050763.1| 23S rRNA methyluridine methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|97273716|sp|Q6D3S2|RUMB_ERWCT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|49612122|emb|CAG75572.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 375

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    R+  +EI+  ++  AR +     + +V+   + S +F  
Sbjct: 236 SMWDLFCGVGGFGLHCASSEMRLTGIEISAEAIACARRSAEQLGLKHVEFQALDSTQFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
           A         + D+         + V+PPR G+       +   A  +ILY SCN +S+ 
Sbjct: 296 AK------AEIPDL---------VLVNPPRRGIGSELCSYLSRMAPDYILYSSCNAESMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +D++ L+    + R+ LFD FP+T H E   LL R
Sbjct: 341 KDMTELANYRAL-RVQLFDMFPHTAHYEVLTLLKR 374


>gi|259500506|ref|ZP_05743408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           DSM 13335]
 gi|259167890|gb|EEW52385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           DSM 13335]
          Length = 461

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    
Sbjct: 318 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 377

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M+++                  + VDPPR+GL+   V  ++   P   +YISCNP +L R
Sbjct: 378 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 425

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 426 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 461


>gi|221056410|ref|XP_002259343.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193809414|emb|CAQ40116.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 825

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 29/167 (17%)

Query: 213 LLELYCGNGNFSLVLARHFD----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + +L CG G  S+  A         ++ ++I + S+  A  N   N + N K        
Sbjct: 672 IFDLCCGTGTISICAANELKGKDVHIVGIDICEDSIICANKNAEMNKIKNYK-------- 723

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNP 325
           F Q    E   N +K++   +     I VDPPRSGL ++ + ++   Q    I+Y+SCNP
Sbjct: 724 FIQGRVEELFANEIKNVSEKNSNV-IIIVDPPRSGLANSVLNILSSNQLIGQIIYVSCNP 782

Query: 326 DSLCRDLSILSTTHTI--------ERLALFDQFPYTRHMECGVLLVR 364
            +L     I + TH +        + L   D FP+T H+EC   +V+
Sbjct: 783 ITL-----ISNVTHVLFQNENLRMKNLVFVDMFPHTFHLECITNIVK 824


>gi|149012968|ref|ZP_01833857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP19-BS75]
 gi|169832868|ref|YP_001694472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Hungary19A-6]
 gi|303255584|ref|ZP_07341635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS455]
 gi|303260473|ref|ZP_07346441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP-BS293]
 gi|303262830|ref|ZP_07348767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265300|ref|ZP_07351210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS397]
 gi|303266507|ref|ZP_07352394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS457]
 gi|303268374|ref|ZP_07354170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS458]
 gi|147763121|gb|EDK70062.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP19-BS75]
 gi|168995370|gb|ACA35982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Hungary19A-6]
 gi|301801862|emb|CBW34580.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
 gi|302597440|gb|EFL64535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS455]
 gi|302636028|gb|EFL66526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638385|gb|EFL68852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP-BS293]
 gi|302642095|gb|EFL72446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS458]
 gi|302643958|gb|EFL74218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS457]
 gi|302645165|gb|EFL75402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS397]
          Length = 543

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|303263128|ref|ZP_07349055.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|302635727|gb|EFL66235.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP14-BS292]
          Length = 443

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N      +N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +E             YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L R
Sbjct: 368 WYKE------------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           DL  L   + +  +   D FP+T   E 
Sbjct: 416 DLVRLVEVYDLHYIQSVDMFPHTARTEA 443


>gi|148994234|ref|ZP_01823527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP9-BS68]
 gi|168488850|ref|ZP_02713049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP195]
 gi|168576242|ref|ZP_02722136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae MLV-016]
 gi|147927375|gb|EDK78406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP9-BS68]
 gi|183572483|gb|EDT93011.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP195]
 gi|183577973|gb|EDT98501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae MLV-016]
 gi|332073360|gb|EGI83839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA17570]
          Length = 543

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKD----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|145300530|ref|YP_001143371.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853302|gb|ABO91623.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 456

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 16/159 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA    +V+ +E  + ++  AR N A N + + +     +++    
Sbjct: 310 VFDIYCGIGTISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL--- 366

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
                    + ++         + +DPPR G D A +  +V   P  ++Y+SCNP +L R
Sbjct: 367 ---------MPELYAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLAR 417

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           DL+ ++     ++ +   D FP++ H+E  V  +  P+G
Sbjct: 418 DLAWLVKQGFMLDEVQPVDMFPHSMHVE-AVARLSLPAG 455


>gi|152965530|ref|YP_001361314.1| deoxyribonuclease/rho motif-related TRAM [Kineococcus radiotolerans
           SRS30216]
 gi|151360047|gb|ABS03050.1| deoxyribonuclease/rho motif-related TRAM [Kineococcus radiotolerans
           SRS30216]
          Length = 450

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 21/212 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           R +V+ER+TV G    +R     F Q +      + E VLAA     G+  L+LY G G 
Sbjct: 253 RTWVEERVTVRGEDHAFRVGGAGFWQVHPAAPTLLGEAVLAALDPRPGESALDLYSGAGL 312

Query: 223 FSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+ +LA        VLAVE  + +V  AR ++     +  + V + +    +A       
Sbjct: 313 FTALLADAVGAGGSVLAVEGEERAVRDARRSL-----HGREQVELWAGAVEEA------- 360

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL--YISCNPDSLCRDLSILST 337
             L D ++ + R   + +DPPRSG     V  V A       Y++C+P +L RD + L+ 
Sbjct: 361 --LVDEELTARRVDVVVLDPPRSGAGREAVAAVAALGARAVAYVACDPAALARDTASLAE 418

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
             + +  L  FD FP T H+EC    V +  G
Sbjct: 419 HGYVLAGLRAFDLFPQTHHVECVARFVPRAQG 450


>gi|328479439|gb|EGF48724.1| RNA methyltransferase [Lactobacillus rhamnosus MTCC 5462]
          Length = 193

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 27/209 (12%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-----GIQGDLLELYC 218
           + Y+ E  T++GRT  ++    +F Q    +N    E + A  K          L++ YC
Sbjct: 5   QPYIQE--TLSGRT--FQLSPQAFLQ----LNPKQTEQLYAIAKDALQLAPDDTLIDAYC 56

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   + LA     +  ++    ++  A+ N   N  NN               + E  
Sbjct: 57  GIGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTHYF---------VGKAETL 107

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS 336
           F +     IH      + VDPPRSGL+   +  ++Q  P    YISCNP +L RDL  L+
Sbjct: 108 FPKWLKEGIHP---NAVIVDPPRSGLERPFIDALLQLNPQKFAYISCNPSTLARDLVPLA 164

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ +   D FP T   E  V   R+
Sbjct: 165 KHYQVDWIQSIDMFPQTARCEAVVKFTRR 193


>gi|237733145|ref|ZP_04563626.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383827|gb|EEO33918.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 448

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 155/344 (45%), Gaps = 39/344 (11%)

Query: 35  IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL---MIEMM 91
           I   +P HYR + +  +   G+ L    + Q++ E +  +     + L N +   + E+M
Sbjct: 116 IMMEKPWHYRNKVQMPVGVKGNHLVTGFYKQKSNEIIPCENCYIQNELSNQITNRVKELM 175

Query: 92  ATIRLEPLLR-AKLFQIDYLTSQ----SDQAIVTLIYHR--------LLDDAWRECAIRL 138
              ++ P  + A    I ++ ++    +D+ ++ LI +R        L++   +E  + +
Sbjct: 176 EEFKIYPYDKLAHQGNIKHILTKHGYHTDEVMLVLISYRNKIKDMDKLVEIITKEFPM-I 234

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
           +  +    ++   +    +  I     Y+ +  T+ G    Y+    SF Q N  I V  
Sbjct: 235 KTVIQNINHRTDNVILGEQEVILFGNGYIYD--TLLGNK--YKISLKSFYQVNP-IQVEK 289

Query: 199 LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           L        G+  +  +L+ YCG G  +L +A++  +V  VEI + +++ A+ N   N++
Sbjct: 290 LYSKAIEFAGLSKEDIVLDAYCGIGTITLSVAKYVKKVYGVEIVETAIDDAKNNAVLNNI 349

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAY 315
           +N +     + ++   +      N+ + +D+       +FVDPPR G     +  ++QA 
Sbjct: 350 SNAEFKCSDAGKYMLEL-----VNQDQHLDV-------VFVDPPRKGCSTEFLDNLIQAE 397

Query: 316 P-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           P  I+YISC+  +  RD+  L    +  +     D FP+T H+E
Sbjct: 398 PKKIIYISCDVATQARDIKYLQEFGYHADVCQPVDMFPHTTHIE 441


>gi|212715602|ref|ZP_03323730.1| hypothetical protein BIFCAT_00501 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660969|gb|EEB21544.1| hypothetical protein BIFCAT_00501 [Bifidobacterium catenulatum DSM
           16992]
          Length = 421

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 28/210 (13%)

Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           E++TVAG    Y      F Q     P A  N H+++ V     G +   L +LY G+G 
Sbjct: 224 EKVTVAGHEFEYNVDAGGFWQMHRHAPIALTN-HVIDLVRGELDGAKSACLWDLYSGSGL 282

Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+L LA       R+L+VE  K +V  A+ N+   H+ NV   R+     T A  R    
Sbjct: 283 FTLPLATLTAERTRMLSVEGGKTAVRNAQRNLRHIHLGNVD-ARVGDVAKTLANVR---- 337

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDLSIL- 335
           N L   D+       + +DPPR+G        +  V+A   + YI+C+P SL RD + L 
Sbjct: 338 NDLAKPDV-------VVLDPPRAGARAKVCRQIAEVEAKSAV-YIACDPASLARDTATLV 389

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + +  +  FD +P T H+E  V L RK
Sbjct: 390 SLGYELADIRAFDIYPMTHHVET-VALFRK 418


>gi|289670316|ref|ZP_06491391.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 444

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 89/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N + N +     + + TQ  R         +       F  + 
Sbjct: 325 VEGDAGLVARAKDNAQRNGLENAQFY---AADLTQDQR---------NTPWMRQGFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 433 AHVESIAVFERR 444


>gi|327470379|gb|EGF15835.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK330]
          Length = 463

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRANALIVDPPRIGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L   + +  +   D FP+T   E  V L +K S
Sbjct: 416 DLVKLCQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452


>gi|290580745|ref|YP_003485137.1| putative RNA methyltransferase [Streptococcus mutans NN2025]
 gi|254997644|dbj|BAH88245.1| putative RNA methyltransferase [Streptococcus mutans NN2025]
          Length = 454

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  A  N A N++ NV  V  S+++   +
Sbjct: 308 VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYVADSAEKAMAS 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +               +   I VDPPR GL ++ +    A     I YISC P ++ R
Sbjct: 368 WSK------------RGIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           D+ +     + + ++   D FP T H+EC  LL
Sbjct: 416 DVKLYEELGYKLVKVQPVDLFPQTHHVECVSLL 448


>gi|326776084|ref|ZP_08235349.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656417|gb|EGE41263.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces cf. griseus
           XylebKG-1]
          Length = 442

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 22/155 (14%)

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  + +       VL +E  K +VE AR+N+      ++  VR+   +  
Sbjct: 297 LDLYCGVGLFAGAIGQRLGEKGAVLGIESGKRAVEDARHNL-----KDLDRVRIEHGKVD 351

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           Q + R      + + D+       I +DPPR+G     V  +       I Y++C+P +L
Sbjct: 352 QVLPR----TGITECDL-------IVLDPPRAGAGKQVVKHLSGLGARRIAYVACDPAAL 400

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
            RDL+      + +  L  FD FP T H+EC  +L
Sbjct: 401 ARDLAYFRDGGYKVRTLRAFDLFPMTHHVECVAIL 435


>gi|182435447|ref|YP_001823166.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463963|dbj|BAG18483.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 442

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 22/155 (14%)

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  + +       VL +E  K +VE AR+N+      ++  VR+   +  
Sbjct: 297 LDLYCGVGLFAGAIGQRLGEKGAVLGIESGKRAVEDARHNL-----KDLDRVRIEHGKVD 351

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           Q + R      + + D+       I +DPPR+G     V  +       I Y++C+P +L
Sbjct: 352 QVLPR----TGITECDL-------IVLDPPRAGAGKQVVKHLSGLGARRIAYVACDPAAL 400

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
            RDL+      + +  L  FD FP T H+EC  +L
Sbjct: 401 ARDLAYFRDGGYKVRTLRAFDLFPMTHHVECVAIL 435


>gi|260833806|ref|XP_002611903.1| hypothetical protein BRAFLDRAFT_106799 [Branchiostoma floridae]
 gi|229297275|gb|EEN67912.1| hypothetical protein BRAFLDRAFT_106799 [Branchiostoma floridae]
          Length = 650

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 23/157 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA+H  +V+ VE+ + +VE A+ N   N ++N + +   +++    
Sbjct: 494 VLDVCCGTGTIGLTLAKHVKKVIGVELCQQAVEDAKVNANINGIDNAEFLCGKAEDILPD 553

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           + R     RL   D+         VDPPR+GL    + +++   +   ++Y+SCN  S  
Sbjct: 554 LVR-----RLYGTDL------VAVVDPPRAGLHTRVISVLRKCSNLTKLVYVSCNSQSAM 602

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHME 357
                LCR  S           R    D FP+TRH E
Sbjct: 603 PNFIDLCRPTSNKFKGAAFRPVRAVPVDLFPHTRHSE 639


>gi|312871819|ref|ZP_07731907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 3008A-a]
 gi|311092761|gb|EFQ51117.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 3008A-a]
          Length = 457

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    
Sbjct: 314 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M+++                  + VDPPR+GL+   V  ++   P   +YISCNP +L R
Sbjct: 374 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 422 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 457


>gi|313618460|gb|EFR90466.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
           S4-378]
          Length = 129

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 16/134 (11%)

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  ++I   S+E A+ N   N + NV      +++      +E             +R  
Sbjct: 6   VRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE------------GFRPD 53

Query: 294 TIFVDPPRSGLDDATVG---MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
            + VDPPRSG D   +     V+A   ++Y+SCNP +L RDL++L+  + I  +   D F
Sbjct: 54  AVIVDPPRSGCDQGLIKSLLQVEAK-QLVYVSCNPSTLARDLALLAKKYQIRYMQPVDMF 112

Query: 351 PYTRHMECGVLLVR 364
           P T H+E  VL+ R
Sbjct: 113 PQTAHVETVVLMSR 126


>gi|167756546|ref|ZP_02428673.1| hypothetical protein CLORAM_02083 [Clostridium ramosum DSM 1402]
 gi|167702721|gb|EDS17300.1| hypothetical protein CLORAM_02083 [Clostridium ramosum DSM 1402]
          Length = 448

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 15/148 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ YCG G  +L +A++  +V  VEI + +++ A+ N   N+++N +     + ++   
Sbjct: 306 VLDAYCGIGTITLSVAKYVKKVYGVEIVETAIDDAKNNAVLNNISNAEFKCSDAGKYMLE 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCR 330
           +      N+ + +D+       +FVDPPR G     +  ++QA P  I+YISC+  +  R
Sbjct: 366 L-----VNQDQHLDV-------VFVDPPRKGCSTEFLDNLIQAEPKKIIYISCDVATQAR 413

Query: 331 DLSILST-THTIERLALFDQFPYTRHME 357
           D+  L    +  +     D FP+T H+E
Sbjct: 414 DIKYLQEFGYHADVCQPVDMFPHTTHIE 441


>gi|295101716|emb|CBK99261.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii
           L2-6]
          Length = 548

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   L +A     ++ VEI   ++++A+    AN       V   S+ F   
Sbjct: 310 LLDLYCGMGTIGLSMADRCRELIGVEIVPEAIDSAK----ANAARMGDAVAAKSRFFCAD 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330
             +       + +     R   I +DPPR G D+ T+  V Q  P  ++Y+SCN  +  R
Sbjct: 366 AGQAAARLAAEGL-----RPDVIMLDPPRKGCDETTLSAVAQMSPRRVVYVSCNSSTAAR 420

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           D + L    +  E++   D FP TRH+E  VLL +  +  H
Sbjct: 421 DAAWLEEHGYHAEKVQPVDLFPRTRHVETVVLLSKLNTKQH 461


>gi|302899107|ref|XP_003047981.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256728913|gb|EEU42268.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 547

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 23/162 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFT 270
           L++ Y G+G F++ L+  F   + ++IA  S+  A  N A N +N    K +   + E  
Sbjct: 394 LIDAYSGSGLFTITLSSLFQHSIGIDIAADSIAYASRNAALNGLNEDRCKFIAADAGELF 453

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           +++     +NR + +         + +DPPR G D   +G ++ +    +LY+SCN  + 
Sbjct: 454 KSV----TYNRDETV---------VVLDPPRKGCDADFLGQLRKFGPRRVLYVSCNVHTQ 500

Query: 329 CRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +L         + IE L  FD FP T H+E   +L R
Sbjct: 501 ARDVGVLVRGEGEGERYEIESLRGFDFFPQTGHVEGVAILNR 542


>gi|308535284|ref|YP_002138867.2| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem]
 gi|308052629|gb|ACH39071.2| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem]
          Length = 444

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 121/292 (41%), Gaps = 25/292 (8%)

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
           L+N  + E+   +   P L   + Q+D       ++I    Y      +  +C +  R  
Sbjct: 168 LLNQALAEVRGILPRLPQLEG-ITQVDLAMGDDGESIAVFHYRGKDAASLLDCLLAARPE 226

Query: 142 LHARKYQIQLIGRANKTKICLDRDY----VDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           L +        G   +       D     V   L    R +  R     F+Q N   N+ 
Sbjct: 227 LPSVTGAYVKTGEKGEMSAVFGVDSLSYGVPAGLFPGSREVRLRFSRGGFSQVNYRQNLE 286

Query: 198 ML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           ++    EW  A  +G +  +L+LYCGNGN S+ +A     V+ VE   PS+  A  N  A
Sbjct: 287 LIKTVGEWG-ALREGAR--VLDLYCGNGNISVPIAPLVGEVVGVEGYAPSIVDAAANAEA 343

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N   N + +   +    + + + +E            +F  + +DPPR+G + A    + 
Sbjct: 344 NGALNARYLVGDAALSVRRLAKRKE------------KFDLVVLDPPRAGAEAAGELAIL 391

Query: 314 AYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           A   ILY+SC+P +L RDL  +    + + R    D FP T H+E    L+R
Sbjct: 392 APERILYVSCDPATLARDLGQLCGAGYRVARSKPVDMFPQTYHLESVTELIR 443


>gi|258508829|ref|YP_003171580.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257148756|emb|CAR87729.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|259650133|dbj|BAI42295.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
          Length = 455

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 92/216 (42%), Gaps = 29/216 (13%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-----GIQGD 212
           +++   + Y+ E  T++GRT  ++    +F Q    +N    E + A  K          
Sbjct: 261 SRLLAGQPYIQE--TLSGRT--FQLSPQAFLQ----LNPKQTEQLYAIAKDALQLAPDDT 312

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           L++ YCG G   + LA     +  ++    ++  A+ N   N  NN    V  +   F +
Sbjct: 313 LIDAYCGIGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTHYFVGKAETLFPK 372

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329
            ++                R   + VDPPRSGL+   +  ++Q  P    YISCNP +L 
Sbjct: 373 WLKE-------------GIRPNAVIVDPPRSGLERPFIDALLQLSPQKFAYISCNPSTLA 419

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL  L+  + ++ +   D FP T   E  V   R+
Sbjct: 420 RDLVPLAKHYQVDWIQSIDMFPQTARCEAVVKFTRR 455


>gi|56475832|ref|YP_157421.1| 23S rRNA 5-methyluridine methyltransferase [Aromatoleum aromaticum
           EbN1]
 gi|81358490|sp|Q5P841|RUMA_AROAE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|56311875|emb|CAI06520.1| 23S rRNA (Uracil-5-)-methyltransferase [Aromatoleum aromaticum
           EbN1]
          Length = 433

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 16/184 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L       G+ + +L+CG GNFSL +AR    V+ VE ++  V 
Sbjct: 261 FTQVNIDINRLLIRRSLQLLDPRPGERIADLFCGLGNFSLPIARCGATVVGVEGSESLVR 320

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   N ++          EF  A   E   + L  +     R   + +DPPR G  
Sbjct: 321 RAAKNARRNGLHG-------RSEFHAANLFEATEDSLAALG----RLDKLLIDPPREGAI 369

Query: 306 DA--TVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVL 361
                +  +Q+   I+Y+SCNP +L RD ++L     + +    + + FP T H+E   L
Sbjct: 370 AVVKALSTLQSPARIVYVSCNPATLARDAAVLVHEKGYVLRGAGIANMFPQTSHVESIAL 429

Query: 362 LVRK 365
             R 
Sbjct: 430 FERN 433


>gi|302191196|ref|ZP_07267450.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           iners AB-1]
          Length = 457

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    
Sbjct: 314 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M+++                  + VDPPR+GL+   V  ++   P   +YISCNP +L R
Sbjct: 374 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 422 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 457


>gi|329947297|ref|ZP_08294564.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328525514|gb|EGF52558.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 412

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG G F+L LA    RVL VE++  +++ A    A   ++   +VR    E   A  
Sbjct: 264 DLFCGVGGFALALAAPGRRVLGVEVSASAIDGAHAAAALMGLDP-ALVRF---EAGDARV 319

Query: 275 REREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331
            +        + +   R   + V +PPR G+ +   G ++A     +LY SCNP +L  D
Sbjct: 320 LDPAAPGAGALGVCGARGPDLLVVNPPRRGIGERLAGRIEASGVERVLYSSCNPRTLAAD 379

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L+ L +   + R  LFD FP+T H E  V LVR
Sbjct: 380 LARLPSMRVV-RSRLFDMFPHTDHAEVLVELVR 411


>gi|325912561|ref|ZP_08174944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 60-B]
 gi|325477982|gb|EGC81111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 60-B]
          Length = 457

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    
Sbjct: 314 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M+++                  + VDPPR+GL+   V  ++   P   +YISCNP +L R
Sbjct: 374 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 422 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 457


>gi|239944893|ref|ZP_04696830.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
           15998]
 gi|239991359|ref|ZP_04712023.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
           11379]
 gi|291448358|ref|ZP_06587748.1| RNA methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291351305|gb|EFE78209.1| RNA methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 442

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 22/155 (14%)

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  + +       VL +E  K +VE AR+N+      ++  VR+   +  
Sbjct: 297 LDLYCGVGLFAGAIGQRLGEKGAVLGIESGKRAVEDARHNL-----KDLDRVRIEHGKVD 351

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           Q + R      + + D+       I +DPPR+G     V  +       I Y++C+P +L
Sbjct: 352 QVLPR----TGITECDL-------IVLDPPRAGAGKQVVKHLSGLGARKIAYVACDPAAL 400

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
            RDL+      + +  L  FD FP T H+EC  +L
Sbjct: 401 ARDLAYFREGGYRVRTLRAFDLFPMTHHVECVAIL 435


>gi|312873042|ref|ZP_07733102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312874144|ref|ZP_07734178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2052A-d]
 gi|312875643|ref|ZP_07735644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2053A-b]
 gi|329920153|ref|ZP_08276984.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 1401G]
 gi|311088897|gb|EFQ47340.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090214|gb|EFQ48624.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091564|gb|EFQ49948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2062A-h1]
 gi|328936607|gb|EGG33051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 1401G]
          Length = 457

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    
Sbjct: 314 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M+++                  + VDPPR+GL+   V  ++   P   +YISCNP +L R
Sbjct: 374 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 422 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 457


>gi|124023185|ref|YP_001017492.1| SAM-dependent methyltransferase [Prochlorococcus marinus str. MIT
           9303]
 gi|123963471|gb|ABM78227.1| SAM-dependent methyltransferase [Prochlorococcus marinus str. MIT
           9303]
          Length = 465

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 22/179 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           I + +L+W+      I  ++++ YCG G  SL +A     V+ +E+   ++  A  N   
Sbjct: 304 IVLKLLKWLSTTLPDI--NIIDAYCGIGTISLPIAAAGYHVIGLELHAEAIAQANKNALR 361

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N++ N   +          + +  +                + +DPPR GLD   +  + 
Sbjct: 362 NNLGNASFLCGDVSLLLAKILQHHD---------------VLVLDPPRKGLDQMVIKTIL 406

Query: 314 AY--PHILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +     + Y+SC+P +L RDL  L   +  + I++L   D FP T H+EC  LL+R  S
Sbjct: 407 SVRPERVAYLSCDPATLARDLKQLIVPNGPYQIDQLQPIDFFPQTMHIECLALLIRISS 465


>gi|71906490|ref|YP_284077.1| 23S rRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica
           RCB]
 gi|91207804|sp|Q47HS4|RUMA_DECAR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|71846111|gb|AAZ45607.1| 23S rRNA m(5)U-1939 methyltransferase [Dechloromonas aromatica RCB]
          Length = 432

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 15/175 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  +N  ++   L        + + +++CG GNF+L +AR    V+ VE +   V 
Sbjct: 261 FTQVNHAVNRVLVRRALRLLDPQPSERIADMFCGLGNFTLPIARSGATVIGVEGSAALVR 320

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
             R + AAN + +         EF  A   E     L  +     RF  + +DPPR G  
Sbjct: 321 RGRESAAANGLAD-------HVEFGVANLFECTEQSLAALG----RFDKMLIDPPREGAV 369

Query: 306 DATVGMVQAYPH-ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHME 357
           +    + +  P  I+Y+SCNP +L RD ++L T   +        + FP+T H+E
Sbjct: 370 ELVRAIGKDAPKRIVYVSCNPGTLARDAAVLVTEKGYRFVSAGAVNMFPHTAHVE 424


>gi|291525750|emb|CBK91337.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale DSM
           17629]
          Length = 471

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 30/235 (12%)

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
            +  LH +   +  + +   T++     Y  E L      L ++    SF Q N+ +   
Sbjct: 249 FKGVLHTKNDSVADVVKNEGTEVLYGDSYFYEELL----GLKFKITPFSFFQTNS-LGAE 303

Query: 198 ML-----EWVLAATK-GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +L     E++L   K  + G  + +LY G G  + ++A     V+ VEI + +V AA+ N
Sbjct: 304 VLYETAREFILGDDKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKEN 363

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            A N ++N K +                 + LK +D    +   I +DPPR G+    +G
Sbjct: 364 AALNGLDNCKFIAG---------------DVLKVLDEIEEKPDYIILDPPRDGIHPKAIG 408

Query: 311 MVQAY--PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
            +  Y   +++YISC P SL RDL I +   + +E++   D FP T H+EC +++
Sbjct: 409 KIIEYGVENMVYISCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVECVIMM 463


>gi|150024827|ref|YP_001295653.1| RNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771368|emb|CAL42837.1| Probable RNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 471

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 28/224 (12%)

Query: 153 GRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
           G+ N T      K+   RDY+ E +      L +     SF Q N+    + L  +    
Sbjct: 264 GKPNDTIYDQDIKLFKGRDYILEEM----EGLHFSINAKSFYQTNSE-QAYELYKITRDF 318

Query: 207 KGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            G+ G+ L  +LY G G  +  +++   +V+ VE    ++  A+ N   N+++N +    
Sbjct: 319 AGLTGNELVYDLYTGTGTIAQFVSKQAKKVIGVEAVPEAIADAKENAKRNNISNCEF--- 375

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYI 321
               F   M+     N   D  I  +    + + DPPR G+    V  + +     ++Y+
Sbjct: 376 ----FVGDMK-----NVFNDAFIAQHGHPDVIITDPPRDGMHADVVKQILSIGAEKVVYV 426

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCN  +  RDL+++   + + R+   D FP T H+E  VLL ++
Sbjct: 427 SCNSATQARDLALMDEMYQVTRVRPVDMFPQTHHVENVVLLEKR 470


>gi|325912172|ref|ZP_08174570.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 143-D]
 gi|325476122|gb|EGC79290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 143-D]
          Length = 457

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    
Sbjct: 314 LVDAYAGVGTLGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQ 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           M+++                  + VDPPR+GL+   V  ++   P   +YISCNP +L R
Sbjct: 374 MQKD------------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLAR 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 422 DLVLLSQAYDVRLIQPVDMMPQTPRWEGIAKLVLRK 457


>gi|225024584|ref|ZP_03713776.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC
           23834]
 gi|224942735|gb|EEG23944.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC
           23834]
          Length = 430

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 25/189 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
           TL YR     FTQ N   N+ ++   +   +   G+ + +L+CG GNFSL +A    +V+
Sbjct: 251 TLPYR--PGDFTQVNPTANILLVARAIQLLQPQPGERIADLFCGLGNFSLPIAAAGAQVI 308

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E +    E A  N   NH+   +  +  S +  Q             +    Y F  I
Sbjct: 309 GIEGSPELTERASQNARLNHL--AERAQFHSADLFQTTEH--------TVAGWGY-FDKI 357

Query: 296 FVDPPRSGLDDATVGMVQAY--PH----ILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
            +DPPRSG       +VQA   P+    I+Y+SCNP +  RD ++L S  +      + +
Sbjct: 358 LLDPPRSG----AYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFRNAGIVN 413

Query: 349 QFPYTRHME 357
            FP T H+E
Sbjct: 414 MFPQTAHVE 422


>gi|156098873|ref|XP_001615452.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148804326|gb|EDL45725.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 836

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 19/165 (11%)

Query: 210 QGDLLELYCGNGNFSLVLARHFD----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           Q  + +L CG G  S+  A         ++ ++I + S+  A  N   N + N K     
Sbjct: 680 QNYIFDLCCGTGTISICAANELKGEDVHIVGIDICEDSIMCANKNAEMNKIKNYK----- 734

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYIS 322
              F Q    E   N +K++   +     + VDPPR GL ++ + ++   Q    I+Y+S
Sbjct: 735 ---FLQGRVEELFSNEIKNVSEKNANV-IVIVDPPRCGLANSVLNILSSNQLIGQIIYVS 790

Query: 323 CNPDSLCRDLS---ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CNP +L  +++     +    I+ L   D FP+T H+EC   +V+
Sbjct: 791 CNPITLISNVTHVLFQNENLKIKNLVFVDMFPHTFHLECITNMVK 835


>gi|300742321|ref|ZP_07072342.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa
           M567]
 gi|300381506|gb|EFJ78068.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa
           M567]
          Length = 376

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 20/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF-DRVLAVEIAKP 242
            SF Q N  I   M E        +Q   L +LYCG G F+L  A+     V  +EI+  
Sbjct: 208 QSFFQTNTQIAQAMYEQGREWVSQVQPRTLWDLYCGVGGFALHAAQVMHGEVTGIEISVE 267

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++ +A+  +A   +  VK     + EF    R   E                + V+PPR 
Sbjct: 268 AIRSAQRTVAEQGLKGVKFAAGDATEFAVNARETPEM---------------LVVNPPRR 312

Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           G+ +     V+     H++Y SCN  +L  DL+ + +   I    L D FP+T H E   
Sbjct: 313 GIGERLCAWVEGSGIEHVIYSSCNAKTLAADLARMPSYRPIAARVL-DMFPHTNHYEVMT 371

Query: 361 LLVR 364
           LL R
Sbjct: 372 LLKR 375


>gi|226306318|ref|YP_002766278.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226185435|dbj|BAH33539.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 422

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 93/222 (41%), Gaps = 34/222 (15%)

Query: 153 GRANKTKICLDRDYVDER-------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
           G   KT++ +  D V ER       L   G    +R   N+++Q        + EW  AA
Sbjct: 225 GGPRKTRVAIGSDTVIERVGNREWALAATGFWQAHRGAANAYSQV-------VGEWAGAA 277

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           T     DL   Y G G F+ VLA        VE  + S  A     AA  ++++  VR  
Sbjct: 278 TADTAWDL---YGGVGVFASVLADLVGPSGVVESVESSARAVADGRAA--LSDLGQVRFH 332

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323
           S          R  N + D++        + +DPPR+G     V  + A     I++I C
Sbjct: 333 SA---------RVENVIADLERSP---AVVVLDPPRAGAGRPVVEALAATGAERIVHIGC 380

Query: 324 NPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +P S  RD+ + L     I  L  FD FP T HMEC  LL R
Sbjct: 381 DPASFGRDIGLYLEQGFRIGGLRAFDAFPQTHHMECIALLER 422


>gi|227529794|ref|ZP_03959843.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC
           49540]
 gi|227350278|gb|EEJ40569.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC
           49540]
          Length = 464

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 20/206 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           ++Y+ E L      L +R    SF Q N      + E    A +   GD L++ Y G G 
Sbjct: 275 QEYITESLM----GLDFRLSARSFLQLNPEQTETLYEEAAKALELSPGDTLIDAYAGIGT 330

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA     V  +E    +V  A+ N   N + N      S+++     R+E      
Sbjct: 331 IGLSLANRVKEVWGMETIPEAVADAKQNANLNGITNAHYEVGSAEDVIPQWRKE------ 384

Query: 283 KDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHT 340
                  + F  + VDPPR+GLD D    +++  P    Y+SCN  SL R+L  L++ + 
Sbjct: 385 ------GHHFDALVVDPPRTGLDNDLIEQIIKERPAKFAYVSCNMASLARNLGRLTSVYH 438

Query: 341 IERLALFDQFPYTRHMECGV-LLVRK 365
           ++ +   D  P T   E  V L +RK
Sbjct: 439 VDYIQPVDMMPQTTRCEAVVKLSIRK 464


>gi|58581482|ref|YP_200498.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58426076|gb|AAW75113.1| RNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 479

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 302 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 359

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 360 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDKLL 407

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 408 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 467

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 468 AHVESIAVFERR 479


>gi|296449152|ref|ZP_06890939.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296880869|ref|ZP_06904817.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP07]
 gi|296261971|gb|EFH08779.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296428156|gb|EFH14055.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP07]
          Length = 453

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 31/220 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           + ++ ++   RDY+ E +      L ++    SF Q N        E + +  +   GD 
Sbjct: 257 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 308

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +
Sbjct: 309 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 368

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             + ++ + +                I VDPPR G+    +  +  +    I+YISCNP 
Sbjct: 369 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 413

Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SL  DL       + I  +   D FP T H E  V LVR+
Sbjct: 414 SLVVDLVDFKRYGYEIRMVKCMDMFPNTPHCETIVKLVRE 453


>gi|261326189|emb|CBH09015.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 559

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 31/201 (15%)

Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N AG+ + + E V  A    +  LL+L CG G   + LA+H  RV+ +E+ + +
Sbjct: 371 TSFFQVNTAGMELLLRETVAVAELTPETTLLDLCCGTGTIGIALAKHVKRVIGIELVESA 430

Query: 244 VEAARYNIAANHVNNV-----KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           V  AR N   N V N      ++  +     +Q    +R       +DI         +D
Sbjct: 431 VRDARLNAERNGVRNATFNCGRVEHLLPSVISQLSPEDR-------MDI------VAILD 477

Query: 299 PPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHT-------IERLALF- 347
           PPR+G+    +  ++    I   +YISC   +L RD   L+   T          +A F 
Sbjct: 478 PPRAGVTPTVLKWIRGTATIRRLVYISCEQKALQRDCPPLTKPATKAYRESPFNVVAGFA 537

Query: 348 -DQFPYTRHMECGVLLVRKPS 367
            D FP+T H+E   +L R  S
Sbjct: 538 IDMFPHTPHVEMVAVLSRSNS 558


>gi|85858975|ref|YP_461177.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Syntrophus aciditrophicus
           SB]
 gi|85722066|gb|ABC77009.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Syntrophus aciditrophicus
           SB]
          Length = 429

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 116/268 (43%), Gaps = 28/268 (10%)

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDER 170
           +D  IV +    ++D++       LR  L+A     +  G+  +  I      +  VD  
Sbjct: 171 ADSRIVPVSRCAIVDESVNRSLTALRGKLNAISAAGRRGGKKEERVILWSDTGKAAVDPG 230

Query: 171 LTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
           ++     L+ R ++          F Q N+ +   M++ V+ A   + G   +L+ YCG+
Sbjct: 231 VSGGRGGLVMRPVKEKMLRAPFQGFFQANSALVGSMVDSVIRAC-ALTGKETVLDAYCGS 289

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G FSL LA    ++  V+    +V  A  N++   ++N +       E      R     
Sbjct: 290 GLFSLFLASSARQLFGVDADGEAVHCAAENLSKEGISNAEFFAGDVGEIL----RHTFLK 345

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
             + +DI       + +DPPR G     +  +++     I+YISCNP +  RD+  L  +
Sbjct: 346 TQQSVDI-------VVLDPPRIGCSSDVLEALKSLGPARIIYISCNPATQARDVRRLRDS 398

Query: 339 HTIER-LALFDQFPYTRHMECGVLLVRK 365
             I R L   D FP T+H+E   LL R+
Sbjct: 399 GYILRDLQPIDMFPQTKHIEIVGLLERE 426


>gi|68536156|ref|YP_250861.1| putative SAM-dependent methyltransferase [Corynebacterium jeikeium
           K411]
 gi|68263755|emb|CAI37243.1| putative SAM-dependent methyltransferase [Corynebacterium jeikeium
           K411]
          Length = 446

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 16/146 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G FS VL+R  +RV+ V++A  + ++    +AA  ++NV+ V          + 
Sbjct: 299 DLYGGAGVFSAVLSRKAERVVCVDVAGSASKSGVKAMAAAGIDNVEFVDGDVAGQVPQLP 358

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332
           R    +              + +DPPR+G    TV  + +A P H++++ C+P +  RDL
Sbjct: 359 RGGSLH-------------AVVLDPPRTGAGTQTVADIAKARPRHVVHVGCDPATAARDL 405

Query: 333 SI-LSTTHTIERLALFDQFPYTRHME 357
           +  +   + I+ L + D F    H+E
Sbjct: 406 AAWIDNGYAIKELCVVDAFGLNHHVE 431


>gi|161723317|ref|NP_245007.2| 23S rRNA methyluridine methyltransferase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|20455417|sp|Q9CPH1|RUMB_PASMU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
          Length = 387

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 21/163 (12%)

Query: 213 LLELYCGNGNFSLVLARHF-----DRVL---AVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           L +L+CG G F L  A+       DR++    +EI+  ++EAA  +     +  VK   +
Sbjct: 236 LWDLFCGVGGFGLHCAQALQTQYPDRIIQLTGIEISASAIEAATLSAQKLGLKQVKFQSL 295

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYIS 322
            +K F  A     + +  +           + V+PPR G+  +    + Q  PH ILY S
Sbjct: 296 DAKHFALAQSPAAQDDTPE----------LVIVNPPRRGIGIELAQFLNQLAPHFILYSS 345

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CN +++ +D+  LS  + ++++ LFD FP+T H E   LL RK
Sbjct: 346 CNAETMGKDVLHLSD-YQLKKVQLFDMFPHTSHYEVLCLLERK 387


>gi|295689033|ref|YP_003592726.1| (uracil-5)-methyltransferase [Caulobacter segnis ATCC 21756]
 gi|295430936|gb|ADG10108.1| (Uracil-5)-methyltransferase [Caulobacter segnis ATCC 21756]
          Length = 416

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 29/203 (14%)

Query: 170 RLTVAGRTL-------------IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           R+T+AG T+             +      +F Q        M+++ +A  +G    L +L
Sbjct: 221 RVTLAGETVYGARQPLVKLGQAVVALPPGAFLQAVPAAERAMVDFTVAEAQGAS-RLADL 279

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G F+  LA     V A E++ P++EA     A    + +K +   +++    +RR 
Sbjct: 280 YCGVGTFTFRLA-EIGAVHAAEMSAPAIEA--LKTAMGSTSGLKPIHAEARDL---VRRP 333

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL-SI 334
                L   D+       + +DPPR+G  + TV + ++    ++ +SCNP +  +D  ++
Sbjct: 334 VLSTELAKTDV-------VVIDPPRAGAAEQTVEIAKSKVAKVISVSCNPGTFAKDARAL 386

Query: 335 LSTTHTIERLALFDQFPYTRHME 357
           +     +E++   DQF ++ H+E
Sbjct: 387 VEAGFRLEKVLPVDQFVWSPHIE 409


>gi|258545955|ref|ZP_05706189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cardiobacterium
           hominis ATCC 15826]
 gi|258518833|gb|EEV87692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cardiobacterium
           hominis ATCC 15826]
          Length = 430

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 138/349 (39%), Gaps = 45/349 (12%)

Query: 33  LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA 92
           L     EP HYR RA    W D      + F  +   R+     +   L + A +   + 
Sbjct: 111 LPAISGEPWHYRSRARL-AWDDAQQ--ALGFRGRASSRV---VNLERCLTLPAAISARLP 164

Query: 93  TIRLEPLLRAKLFQIDYL----TSQSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKY 147
            IR    L A+L Q   L     S+ D   V  I   + + D      +   +   A+ +
Sbjct: 165 DIRA---LCARLAQQTTLHGVDISEGDSVTVLRIRLQKAVGDRLAAETVARWNESAAQPW 221

Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           QI L       K   D   +   L     T+ Y    + FTQ N  +N  ++   LAA +
Sbjct: 222 QIWLQNGRETRKHPADAPALAYTLPAYDLTMPY--APDDFTQVNKALNRELVTQALAALQ 279

Query: 208 GIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
              G  +L+ +CG GNF+L LAR    VL +E     VE               +VR ++
Sbjct: 280 VPPGARVLDFFCGLGNFTLPLARSGADVLGLE----GVEE-------------MVVRATA 322

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKT------IFVDPPRSG---LDDATVGMVQAYPH 317
                 +    +F R     + + + K         +DPPR+G   L +A  G   A   
Sbjct: 323 NAAAHGLAARCQFRRADLFTVTAKQLKAWGKAERWLLDPPRAGAQALCEALDGK-HAPAR 381

Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           I+Y+SCNP +L RD  IL+   + +    L   F  T H+E   + VRK
Sbjct: 382 IVYVSCNPGTLARDAGILAQKGYRMASGRLLHMFAQTAHVESLAVFVRK 430


>gi|94987018|ref|YP_594951.1| RNA methyltransferase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731267|emb|CAJ54630.1| similar to RNA methyltransferase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 470

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 14/145 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G+ +L LA    +V+ VE    S+  A  N  +    N   ++  +  F   +R
Sbjct: 326 DLYTGVGSIALFLAPFSLKVIGVESIAASINLANKNRLSLGYTNCSFIQDDAFSF---IR 382

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332
            + +     DI         + VDPPR+GLD   + ++   A    +Y+SCNP +  RD+
Sbjct: 383 SQIQKGITPDI---------VIVDPPRAGLDKKVIELLIRLAPRRCIYVSCNPGTFARDI 433

Query: 333 SILSTTHTIERLALFDQFPYTRHME 357
           ++LS    I++    D FP+T H+E
Sbjct: 434 AMLSPHFVIQQTQPVDLFPHTPHVE 458


>gi|260578853|ref|ZP_05846759.1| SAM-dependent methyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258603000|gb|EEW16271.1| SAM-dependent methyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 455

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 16/146 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G FS VL+R  +RV+ V++A  + ++    +AA  ++NV+ V          + 
Sbjct: 308 DLYGGAGVFSAVLSRKAERVVCVDVAGSASKSGVKAMAAAGIDNVEFVDGDVAGQVPQLP 367

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332
           R    +              + +DPPR+G    TV  + +A P H++++ C+P +  RDL
Sbjct: 368 RGGSLH-------------AVVLDPPRTGAGTQTVADIAKARPRHVVHVGCDPATAARDL 414

Query: 333 SI-LSTTHTIERLALFDQFPYTRHME 357
           +  +   + I+ L + D F    H+E
Sbjct: 415 AAWIDNGYAIKELCVVDAFGLNHHVE 440


>gi|255654431|ref|ZP_05399840.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-23m63]
          Length = 451

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 31/220 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           + ++ ++   RDY+ E +      L ++    SF Q N        E + +  +   GD 
Sbjct: 255 QCDELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNT----KGAEVLYSIARDFIGDY 306

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +
Sbjct: 307 NDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAK 366

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             + ++ + +                I VDPPR G+    +  +  +    I+YISCNP 
Sbjct: 367 VVKDLKDKPDL---------------IIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPK 411

Query: 327 SLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SL  DL       + I  +   D FP T H E  V LVR+
Sbjct: 412 SLVVDLVDFKRYGYEIRMVKCMDMFPNTPHCETIVKLVRE 451


>gi|170770019|ref|ZP_02904472.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia albertii
           TW07627]
 gi|170121085|gb|EDS90016.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia albertii
           TW07627]
          Length = 147

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 18/153 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A  
Sbjct: 3   DLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATAQG 62

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332
              E                + V+PPR G+       +   A   I+Y SCN  ++ +D+
Sbjct: 63  EVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMTKDI 107

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             L   H IER+ LFD FP+T H E   LLV++
Sbjct: 108 RELPGYH-IERVQLFDMFPHTAHYEVLALLVKQ 139


>gi|91207815|sp|Q3BVV1|RUMA_XANC5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 444

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   +A  +    D +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 325 VEGDAGLVARAKENAQRNGLDNAQ---FHAADLTQDQRSAPWMRQ---------GFDKLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGALEVLQQLPLKTFDRIVYVSCHPGSLARDAGYLVNDQGFTLVCAGAMDMFPHT 432

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 433 AHVESIAVFERR 444


>gi|227329295|ref|ZP_03833319.1| 23S rRNA methyluridine methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 375

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    R+  +EI+  ++  AR +     +  V+   + S +F  
Sbjct: 236 SMWDLFCGVGGFGLHCASPEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
           A         + D+         + V+PPR G+       +   A  +ILY SCN +S+ 
Sbjct: 296 AK------AEIPDL---------VLVNPPRRGIGSELCAYLSRMAPDYILYSSCNAESMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +D++ L+    + R+ LFD FP+T H E   LL R
Sbjct: 341 KDMTELANYRAL-RVQLFDMFPHTAHYEVLTLLKR 374


>gi|298346672|ref|YP_003719359.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236733|gb|ADI67865.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC
           43063]
          Length = 342

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 13/162 (8%)

Query: 215 ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA--ANHVNNVKIVRMSSKEFTQ 271
           +LYCG G F+  L+     +V  VE+  P+++ A++ +   A+    V +   +  + T 
Sbjct: 180 DLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNKNDGTP 239

Query: 272 AMRREREFNRLKDIDIHSYRFKT-------IFVDPPRSGLDDATVGMVQ--AYPHILYIS 322
                         D   +           + V+PPR GL       ++    PH++Y S
Sbjct: 240 NTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPHLIYSS 299

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           C P +L  DL  +  ++ I    L D FP+T H+EC VL+ R
Sbjct: 300 CFPGTLVEDLRRMR-SYQIRAAKLVDMFPHTSHVECVVLMSR 340


>gi|268590215|ref|ZP_06124436.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia rettgeri
           DSM 1131]
 gi|291314496|gb|EFE54949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia rettgeri
           DSM 1131]
          Length = 377

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 25/186 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV A        L +L+CG G F L  A     +  +EI+
Sbjct: 208 QSFFQTNPVVAAKLYQTAREWVKALDIH---SLWDLFCGVGGFGLHCAEKDTHLTGIEIS 264

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            P++ +A+ +     + +V+   + S  F  A +         DI       + I V+PP
Sbjct: 265 APAIASAQQSADELGLKHVEFKALDSTRFATANQ---------DIP------QLILVNPP 309

Query: 301 RSGLDDATVGMVQ-AYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+       +    P +ILY SCN  ++ +DL +L+  + + ++ LFD FP+T H E 
Sbjct: 310 RRGIGKELCDFLSHVQPEYILYSSCNAQTMAQDLQLLA-GYQVCKVQLFDLFPHTAHFEV 368

Query: 359 GVLLVR 364
             LL R
Sbjct: 369 LTLLKR 374


>gi|126324739|ref|XP_001376871.1| PREDICTED: similar to HpaII tiny fragments locus 9C [Monodelphis
           domestica]
          Length = 663

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 23/164 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA+   RV+ +E+ + +VE AR N   N ++N++     +++   +
Sbjct: 447 VLDVCCGTGTIGLSLAQTVKRVIGIELCQEAVEDARVNAKMNALDNIEFHCGKAEDLVPS 506

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           +       RL           T  VDPPR+GL    +  ++   H   ++Y+SCNP +  
Sbjct: 507 LMSSLASQRL-----------TAIVDPPRAGLHSKVILAIRRAEHLKKLIYVSCNPRAAM 555

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  +     R    D FP T H E  +L  R
Sbjct: 556 SNFVDLCRAPSNRVKGSPFRPVRAVAVDLFPQTLHCEMLILFER 599


>gi|260219678|emb|CBA26523.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 489

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 36/298 (12%)

Query: 87  MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146
           +IE M  +   P L  +L   D  TSQ  QA V  +  R ++        RLR A  A +
Sbjct: 192 LIESMDAVETIPQL--ELAMGDMGTSQDSQAGVIALVMRHMEPLSEADKGRLR-AFAATQ 248

Query: 147 YQIQ--LIGRANKTKICLDRDYVDERLTVA------GRTLIYRQIENSFTQPNAGINVHM 198
             +Q  L  +  +T   LD     E   +A      G T+ +R  +  FTQ N  IN  +
Sbjct: 249 PGLQWWLQPKGPETIHRLDELPGHETGDLAYTLPDYGITMPFRPTD--FTQVNPHINRVL 306

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +   L   +  + + +++ +CG GNF+L LA     VL VE A+  V  +R N+  N   
Sbjct: 307 VSRALGLLQVQKTERVIDWFCGLGNFTLPLATQAREVLGVEGAESLVARSRENLTFNSTQ 366

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316
              +   +             F    ++ I         +DPPR G       +VQA   
Sbjct: 367 KKALAPDAPALAATKFVARNLFEMTPELLIADGTADKWLIDPPREG----AYALVQALAA 422

Query: 317 ---------------HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
                           I+Y+SC P +L RD  +L     +T  +  + + FP+T H+E
Sbjct: 423 LHQQPELRKGWTPPRRIVYVSCAPSTLARDAGVLVNEAGYTCTKAGVVNMFPHTAHVE 480


>gi|229916717|ref|YP_002885363.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
 gi|229468146|gb|ACQ69918.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
          Length = 454

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  SL LAR    V  VE+   ++E A+ N   N ++NV     ++++    
Sbjct: 309 VVDAYCGIGTISLFLARKAAHVYGVEVVPEAIEDAKQNALVNEIDNVTYACGAAEDVLPQ 368

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
            +++                  I VDPPR G  ++ +  MV+  P  I+Y+SCN  +  R
Sbjct: 369 WKKD------------GVNPDVIVVDPPRKGCAESFLETMVEMGPKRIVYVSCNVATQAR 416

Query: 331 DLSILST-THTIERLALFDQFPYTRHME 357
           D+  L+   + +  +   D FP+T H+E
Sbjct: 417 DMRYLADHGYRLMEVTPVDMFPHTAHVE 444


>gi|12720278|gb|AAK02154.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 396

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 21/163 (12%)

Query: 213 LLELYCGNGNFSLVLARHF-----DRVL---AVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           L +L+CG G F L  A+       DR++    +EI+  ++EAA  +     +  VK   +
Sbjct: 245 LWDLFCGVGGFGLHCAQALQTQYPDRIIQLTGIEISASAIEAATLSAQKLGLKQVKFQSL 304

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYIS 322
            +K F  A     + +  +           + V+PPR G+  +    + Q  PH ILY S
Sbjct: 305 DAKHFALAQSPAAQDDTPE----------LVIVNPPRRGIGIELAQFLNQLAPHFILYSS 354

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CN +++ +D+  LS  + ++++ LFD FP+T H E   LL RK
Sbjct: 355 CNAETMGKDVLHLSD-YQLKKVQLFDMFPHTSHYEVLCLLERK 396


>gi|156934644|ref|YP_001438560.1| 23S rRNA methyluridine methyltransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|167012640|sp|A7MF48|RUMB_ENTS8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|156532898|gb|ABU77724.1| hypothetical protein ESA_02478 [Cronobacter sakazakii ATCC BAA-894]
          Length = 375

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A     +  +EIA  ++ +AR +  A  + NV    + S +F   
Sbjct: 237 MWDLFCGVGGFGLHCATPEMTLTGIEIAPEAIASARASAQALGLRNVHFQALDSTDFATG 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
            +   +                + V+PPR G+  A    +   A  +I+Y SCN  ++ +
Sbjct: 297 QQAVPDL---------------VLVNPPRRGIGKALCEYLSHMAPRYIVYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+      + I R+ LFD FP+T H E   LLVR+
Sbjct: 342 DIGEWP-GYRIARVQLFDMFPHTAHYEVLTLLVRE 375


>gi|218248804|ref|YP_002374175.1| TrmA family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|257061863|ref|YP_003139751.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8802]
 gi|218169282|gb|ACK68019.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8801]
 gi|256592029|gb|ACV02916.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8802]
          Length = 461

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 26/161 (16%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G FSL LA+   +V+ +E+   S+  AR N   N ++NV  +  + +     
Sbjct: 312 VIDAYCGIGTFSLPLAQRVKQVIGLEVNPNSISQARKNAQLNGIDNVSFLAGTVETLLPQ 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL------DDATVGMV--QAYP-HILYISC 323
           +               S     I +DPPR G       D+ATV  +     P +++YISC
Sbjct: 372 L---------------SCSPDIILLDPPRKGCDHQRRKDEATVTEILRNLQPSYLVYISC 416

Query: 324 NPDSLCRDLSILSTTHTIERLAL--FDQFPYTRHMECGVLL 362
            P ++ RDL  L   +  + L +   D FP T H+E   LL
Sbjct: 417 QPPTMARDLQKLCQGNLYDLLWVQPMDFFPQTAHVESVALL 457


>gi|261339168|ref|ZP_05967026.1| hypothetical protein ENTCAN_05391 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319012|gb|EFC57950.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacter
           cancerogenus ATCC 35316]
          Length = 375

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 22/158 (13%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G + +L+CG G F L  A    ++  +EI+  ++  A  + A   + N+    + S +F 
Sbjct: 235 GHMWDLFCGVGGFGLHCATPEMQLTGIEISAEAIACATQSAAELGLTNLHFQALDSTQFA 294

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYISCNPD 326
                  E                + V+PPR G+     D    M  AY  I+Y SCN  
Sbjct: 295 TGQGNVPEL---------------VLVNPPRRGIGKPLCDYLSQMAPAY--IVYSSCNAR 337

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++ +D++ L   + IER+ LFD FP+T H E   LL +
Sbjct: 338 TMAKDIAHLPG-YRIERVQLFDMFPHTAHYEVLTLLAK 374


>gi|300784521|ref|YP_003764812.1| 23S rRNA methyltransferase [Amycolatopsis mediterranei U32]
 gi|299794035|gb|ADJ44410.1| 23S rRNA methyltransferase [Amycolatopsis mediterranei U32]
          Length = 395

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 33/165 (20%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIA-----ANHVNNVK 260
           + G   +LY G G F+ VLA       RVLA+E  + +V     N+A     + H   V+
Sbjct: 252 VGGSAWDLYAGVGLFASVLATQVGTSGRVLAIESGRRAVADGERNLADLPQVSWHAGRVE 311

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HI 318
            V  S+                K +D+       + +DPPR G   A V  +V   P  I
Sbjct: 312 HVLESAA---------------KPVDV-------VVLDPPRKGAGKAVVESIVAGAPDRI 349

Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           +Y++C+P +L RD++  +   +++  L  FD FP T H+EC  LL
Sbjct: 350 VYVACDPAALARDVATFAAHGYSLTDLRAFDAFPMTHHVECVALL 394


>gi|304397037|ref|ZP_07378916.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. aB]
 gi|304355186|gb|EFM19554.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. aB]
          Length = 379

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 18/159 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A     +  +EI+  +++ A+ +     +  V+   + S  F  
Sbjct: 235 SMWDLFCGVGGFGLHCATPEMELTGIEISAEAIKCAQRSAEMLGLEKVQFAALDSTSFAT 294

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLC 329
                 +                + V+PPR G+ +A    + Q  P ++LY SCNP ++ 
Sbjct: 295 GRDAVPQL---------------VLVNPPRRGIGEALCDYLSQMAPDYLLYSSCNPQTMV 339

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           +D++ LS  + + ++ LFD FP+T H E   LL R+  G
Sbjct: 340 QDIARLSA-YEVTKVQLFDMFPHTAHFEVLTLLTRRHHG 377


>gi|237747678|ref|ZP_04578158.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes
           OXCC13]
 gi|229379040|gb|EEO29131.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes
           OXCC13]
          Length = 464

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 22/184 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N FTQ N  IN  ++   L     G    + +L+CG GNFSL +AR    V+ +E +   
Sbjct: 283 NDFTQVNHHINQVLVSRALRLLDIGEDERIADLFCGLGNFSLPIARQAKEVVGIEGSDIL 342

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            + A  N   N + +      S+            F    +  +   +F  I +DPPR G
Sbjct: 343 TQRAEENAVLNGLEDKTKFACSNL-----------FEMTAENWVALGKFDRILIDPPRDG 391

Query: 304 LDDATVGM-------VQAYPH-ILYISCNPDSLCRDLSILST--THTIERLALFDQFPYT 353
                  +        Q  P  I+Y+SCNP +L RD  IL T   + ++   + + FP+T
Sbjct: 392 AAAVCQAIANLDEKHAQFKPKRIVYVSCNPSTLARDAGILVTEGGYKLDMAGVINMFPHT 451

Query: 354 RHME 357
            H+E
Sbjct: 452 SHVE 455


>gi|304389619|ref|ZP_07371581.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327172|gb|EFL94408.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 342

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 13/162 (8%)

Query: 215 ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA--ANHVNNVKIVRMSSKEFTQ 271
           +LYCG G F+  L+     +V  VE+  P+++ A++ +   A+    V +   +  + T 
Sbjct: 180 DLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNKNDGTP 239

Query: 272 AMRREREFNRLKDIDIHSYRFKT-------IFVDPPRSGLDDATVGMVQ--AYPHILYIS 322
                         D   +           + V+PPR GL       ++    PH++Y S
Sbjct: 240 NTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPHLIYSS 299

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           C P +L  DL  +  ++ I    L D FP+T H+EC VL+ R
Sbjct: 300 CFPGTLVEDLRRMR-SYQIRAAKLVDMFPHTSHVECVVLMSR 340


>gi|294626959|ref|ZP_06705550.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598819|gb|EFF42965.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 491

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   +A       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 314 LAFRPLD--FIQVNASLNQKMIAHAVALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 371

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 372 VEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDKLL 419

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 420 LDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 479

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 480 AHVESIAVFERR 491


>gi|37525531|ref|NP_928875.1| 23S rRNA methyluridine methyltransferase [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|50401494|sp|Q7N6G6|RUMB_PHOLL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|36784959|emb|CAE13877.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 377

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 22/157 (14%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +L+CG G F L  A     +  +EI+  +++ AR +     + N++   + S  F 
Sbjct: 235 SSMWDLFCGVGGFGLHCADKNTCLTGIEISSEAIDCARDSAKTLGLENIEFQALDSTHFA 294

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPD 326
            A  +  +                + V+PPR G    L D    MV  Y  ILY SCN  
Sbjct: 295 VAKDQIPQL---------------VLVNPPRRGIGKVLCDYLSKMVPDY--ILYSSCNAQ 337

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           ++ +D++ L+  + +E+  LFD FP+T H E   LLV
Sbjct: 338 TMAKDIAALA-NYRVEKTQLFDMFPHTEHYEVLTLLV 373


>gi|317969858|ref|ZP_07971248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CB0205]
          Length = 458

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 73/165 (44%), Gaps = 20/165 (12%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G    +++ Y G G +SL LAR   +VL +E+   SV  A  N   N +        ++ 
Sbjct: 307 GKSATVIDAYSGIGTYSLPLARSGLKVLGLEVHPLSVSQATANAERNGI--------TTA 358

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNP 325
            F QA        RLK          ++ VDPPR GL    +G +    P  + YISCNP
Sbjct: 359 FFEQADVAAVLAERLKMTG-------SLLVDPPRKGLRGEALGAILDGTPDRLAYISCNP 411

Query: 326 DSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +L RDL  L      + +E +   D FP T H+E   LL    S
Sbjct: 412 STLARDLQQLCGEEGGYRLETVQPVDFFPQTSHVETLALLTHSGS 456


>gi|114561765|ref|YP_749278.1| 23S rRNA methyluridine methyltransferase [Shewanella frigidimarina
           NCIMB 400]
 gi|122300808|sp|Q087X5|RUMB_SHEFN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|114333058|gb|ABI70440.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella
           frigidimarina NCIMB 400]
          Length = 377

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 23/184 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV   T+     + +L+CG G F L  A    R+  +EI 
Sbjct: 208 KSFFQTNPEVAAQLYQIAREWV---TEFKPNYIWDLFCGVGGFGLHCADSNIRLTGIEIE 264

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++E A  +        V    + S  F +    + + +              I V+PP
Sbjct: 265 SEAIECAILSATKLGFTQVDFSALDSTHFAKGQSAQDKPD-------------LIIVNPP 311

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R GL  +    +  +    I+Y SCNP +L  DL  + T + I ++ +FD FP+T H E 
Sbjct: 312 RRGLGKSLCDSLSEFAPKAIVYSSCNPHTLMSDLEYI-TGYQITKVQMFDMFPHTDHFEV 370

Query: 359 GVLL 362
            V+L
Sbjct: 371 LVML 374


>gi|302343363|ref|YP_003807892.1| RNA methyltransferase, TrmA family [Desulfarculus baarsii DSM 2075]
 gi|301639976|gb|ADK85298.1| RNA methyltransferase, TrmA family [Desulfarculus baarsii DSM 2075]
          Length = 433

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 16/191 (8%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           L  R     F Q N G+N  ++  VL AA +   G+ L+L+ G GNF+L LA+   +V A
Sbjct: 254 LQLRAYPGLFCQVNLGLNQRLMGLVLEAAGQLPPGEALDLFAGGGNFALPLAQAGWQVCA 313

Query: 237 VEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           VE    + +   +      ++  ++I+      +TQA       + +  +     RF  +
Sbjct: 314 VEAQPQAAQVMLWQARRAELDERLEIL------WTQAA------DAVGRLTSSGRRFDLV 361

Query: 296 FVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYT 353
            +DPPR+G       +    P  + Y+SC+P +L RD   +L   +    L   D FP T
Sbjct: 362 VLDPPRAGAKGLMDQVAALAPKRVAYVSCHPAALARDAKELLGYGYAPVALHALDMFPQT 421

Query: 354 RHMECGVLLVR 364
            H+E  ++L R
Sbjct: 422 SHVEALLILDR 432


>gi|294664539|ref|ZP_06729884.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605701|gb|EFF49007.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 491

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   +A       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 314 LAFRPLD--FIQVNASLNQKMIAHAVALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 371

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 372 VEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDKLL 419

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 420 LDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 479

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 480 AHVESIAVFERR 491


>gi|306812692|ref|ZP_07446885.1| 23S rRNA methyluridine methyltransferase [Escherichia coli NC101]
 gi|305853455|gb|EFM53894.1| 23S rRNA methyluridine methyltransferase [Escherichia coli NC101]
          Length = 375

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E  +LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLILLVKQ 375


>gi|254475692|ref|ZP_05089078.1| putative RNA methyltransferase [Ruegeria sp. R11]
 gi|214029935|gb|EEB70770.1| putative RNA methyltransferase [Ruegeria sp. R11]
          Length = 435

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+ G G FSL LAR+ + V AVE  +P + A   ++       +K V   +++  + 
Sbjct: 289 VVDLFAGCGTFSLPLARNAE-VHAVEGERPMLAA--LDLGWRQAKGLKKVTTETRDLFR- 344

Query: 273 MRREREFNRLKDIDIHSY--RFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLC 329
                  N L  +D++ +   +    +DPPR+G +  +V +V A  P I Y+SCNP +  
Sbjct: 345 -------NPLLPVDLNPFGEEYDAAVIDPPRAGAEAQSVQLVAAKTPSIAYVSCNPVTFA 397

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHME 357
           RD  IL    + +  + + DQF ++ H E
Sbjct: 398 RDAKILVDGGYQLNWVQVVDQFRWSSHTE 426


>gi|297566568|ref|YP_003685540.1| (Uracil-5)-methyltransferase [Meiothermus silvanus DSM 9946]
 gi|296851017|gb|ADH64032.1| (Uracil-5)-methyltransferase [Meiothermus silvanus DSM 9946]
          Length = 398

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 30/159 (18%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSV---EAARYNIAANHVNNVKIVRMSSKEFT 270
           +ELY G+G   L LA  F  V+A+EI K +V   EA R  +  +H   ++  R  S    
Sbjct: 262 VELYAGSGVLGLHLAERFCEVIAIEINKDAVRRGEADRERLGVSH---LRFHRGDS---- 314

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328
                 RE       D+       + VDPPRSGL    +  +VQA P  +LY+SC+P + 
Sbjct: 315 ------RELYTFTPADL-------VAVDPPRSGLSAEVMQAIVQARPKRVLYLSCDPATW 361

Query: 329 CRDLSILSTTHTIERLAL---FDQFPYTRHMECGVLLVR 364
            RD+  L  T    RLA    +D +P+T H+E   LL R
Sbjct: 362 ARDVRGL--TQAGYRLAFARPYDFYPFTHHVEVLSLLER 398


>gi|315641196|ref|ZP_07896273.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
           15952]
 gi|315482963|gb|EFU73482.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
           15952]
          Length = 458

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 157/392 (40%), Gaps = 61/392 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHDG--DDLYH 60
           Y +QL  K D L+Q +  F+    Q F         +P HYR +A+F + +      +  
Sbjct: 92  YNKQLVFKRDLLKQALQKFKPKGYQEFDLRPTIGMDDPWHYRNKAQFQLRYSNKRQRIEA 151

Query: 61  IMFDQQTKERMRIDYFM---PGSL--------LINALMIEMMATIRLEPLLRAKLFQIDY 109
            ++   + E + ID  +   P +         L+N   + +    +   + R  + +I  
Sbjct: 152 GLYRPNSHELVPIDDCLVQEPQTQQVLNTTVQLLNKYNVPVYDEKKNSGIFRTLMVRIGV 211

Query: 110 LTSQ-------------SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
           +T++             S QA++  +  RL +       + +   +  +K  + +     
Sbjct: 212 ITNELQLVFITNSEKFPSKQALIRELTTRLPN------VVSIMQNIQNKKTSLVM---GE 262

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLE 215
           KT     +D ++E++      L  R    +F Q N    +V   E + A        +++
Sbjct: 263 KTVNLWGKDTIEEQINEVTFDLSAR----AFFQLNPYQTSVLYQEAIRALDYQSSDTVID 318

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G   L +A    +V  ++    ++  A+ N     + N      ++++      +
Sbjct: 319 AYCGVGTIGLSVAPFVKQVRGMDTISQAITDAKKNAQRKGLTNTHYETGTAEDLIPKWVK 378

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLS 333
           +             Y    I VDPPR+GLDD  +  +  +P   ++Y+SCN  +L RDL 
Sbjct: 379 D------------GYHADAIVVDPPRTGLDDKLLQTLLRHPSKRLVYVSCNVSTLARDLV 426

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            L+  + ++ L   D FP T   E  V L +K
Sbjct: 427 QLAKVYRVDYLQSVDMFPQTARCEVVVKLTKK 458


>gi|311112240|ref|YP_003983462.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa
           ATCC 17931]
 gi|310943734|gb|ADP40028.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa
           ATCC 17931]
          Length = 376

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 78/187 (41%), Gaps = 26/187 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEI 239
            SF Q N  I   M     EWV          L +LYCG G F+L  A+     V  +EI
Sbjct: 208 QSFFQTNTQIAQAMYAQGREWVAQVQPRT---LWDLYCGVGGFALHAAQVMHGEVTGIEI 264

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  ++ +A+  +A   +  VK     + EF    R   E                + V+P
Sbjct: 265 SAEAIRSAQRTVAEQGLEGVKFAAGDATEFAVNARETPEM---------------LVVNP 309

Query: 300 PRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           PR G+ +     V+     H++Y SCN  +L  DL+ + +   +    L D FP+T H E
Sbjct: 310 PRRGIGERLCAWVEGSEIEHVIYSSCNAKTLASDLARMPSYKPVAARVL-DMFPHTNHYE 368

Query: 358 CGVLLVR 364
              LL R
Sbjct: 369 VMTLLRR 375


>gi|169830726|ref|YP_001716708.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637570|gb|ACA59076.1| RNA methyltransferase, TrmA family [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 465

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 156/403 (38%), Gaps = 66/403 (16%)

Query: 5   LLIDQYEQQLAEKV----DRLRQMMLAFQVPNLQIFR-SEPIHYRMRAEFHIWHDGDDLY 59
           LL   Y +QL  K     D L ++    +VP       +EP HYR +A FH+  D   L 
Sbjct: 88  LLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLGMNEPRHYRNKAHFHVSRDSGRLA 147

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIE------MMATIRLEPLLRAKLF----QIDY 109
                + +    R+  F+        L+++            L   LR  L+    Q  Y
Sbjct: 148 LGFLARGSH---RVTCFVDADGGSGCLLVQRDLLRVAARAAALLESLRVPLYDWETQRGY 204

Query: 110 L-------TSQSDQAIVTLIYHRLLDDAWRECAIRLR-------------DALHARKYQI 149
           L        + + + ++ L+  R      RE A RL              +AL  R    
Sbjct: 205 LRNLLLRRAAATGEIMLVLVTGRQNWPGEREFAERLTAEEPGVVSVIRNVNALETR---- 260

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ--PNAGINVHMLEWVLAATK 207
           +L+G  N+ +       + E L      L +R    SF Q  P      + +  + A   
Sbjct: 261 ELLGPENRVRA--GEPAITEHLG----GLKFRIGPASFFQVNPEQAEKTYEIARLFAGLT 314

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G +  +++ Y G G  +L LA     V+  E    +V  A+ N   N + NV+  + + +
Sbjct: 315 GKE-TVVDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQGAVE 373

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
           +             L +      R     +DPPR G   A +  + +  P  ++Y+SC P
Sbjct: 374 DL------------LPEWAARGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAP 421

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +L RDL  L+     + ++   D FP T H+EC V L RK S
Sbjct: 422 ATLARDLGRLAELGFDVVKVQPVDMFPQTSHIECVVSLTRKHS 464


>gi|332299402|ref|YP_004441323.1| RNA methyltransferase, TrmA family [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176465|gb|AEE12155.1| RNA methyltransferase, TrmA family [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 493

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 20/194 (10%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235
           L YR    SF Q N+     + E V    + + GD  + +LY G G  +  LA+    V+
Sbjct: 297 LRYRIGPKSFYQTNSRQAERLYEKVREYAQ-LTGDEVVYDLYTGAGTIANYLAQSCRSVI 355

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKT 294
            +E    +VE A  N   N + N        K              L D  + ++ R   
Sbjct: 356 GIEYVPEAVEDAFVNRDQNGITNATFYAGDMKAI------------LTDDFVAAHGRPDV 403

Query: 295 IFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
           +  DPPR+G+D   V ++ +A P  I+Y+SCNP +  RDL++L     +   R    D F
Sbjct: 404 LVTDPPRAGMDTPVVDVILRAAPQRIVYVSCNPATQARDLALLMAEGQYRAVRACAVDMF 463

Query: 351 PYTRHMECGVLLVR 364
           P+T H+E   LL +
Sbjct: 464 PHTHHVETVALLSK 477


>gi|169842994|ref|XP_001828228.1| tRNA methyltransferase [Coprinopsis cinerea okayama7#130]
 gi|116510684|gb|EAU93579.1| tRNA methyltransferase [Coprinopsis cinerea okayama7#130]
          Length = 564

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 46/258 (17%)

Query: 142 LHARKYQIQLIGRAN-KTKICLDRDYVDERLTVA---------GRTLIYRQIEN------ 185
           +H  K  + L+ R +  T + +D D VD RL+ A          ++L+  ++ +      
Sbjct: 316 VHTYKKGVSLLFRESLDTSVNIDDDSVD-RLSDAFNKQICVTDPKSLVRERVGDWIFEYN 374

Query: 186 --SFTQPNAGINVHMLEWVL-------AATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
             SF Q N  + + + ++V        A T      L++ YCG G F +VL+  F +V  
Sbjct: 375 AGSFFQNNNSVLLPLTDYVRNAIFPPDAPTPSTLTHLVDTYCGAGLFGIVLSPSFQKVAG 434

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E+++ S+  A  N   N ++  KI         +A      F  ++D          + 
Sbjct: 435 IELSQDSIRFATRNAELNKISKDKIS-------FRAGNAGEIFAVVQDFPADQ---TAVL 484

Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL--------STTHTIERLAL 346
           +DPPR G D+  +  +  +    I+Y+SCN  +  RD+  +        +  +T++ +  
Sbjct: 485 IDPPRKGCDEFFIKQLLEFGPKTIVYVSCNVHTQARDVGQIMEAGRTGKAKKYTLDSVRG 544

Query: 347 FDQFPYTRHMECGVLLVR 364
           FD FP T H+E   +L R
Sbjct: 545 FDLFPQTAHVESVAVLTR 562


>gi|78046937|ref|YP_363112.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78035367|emb|CAJ23012.1| RNA methyltransferase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 477

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   +A  +    D +L+L+CG GNF+L LAR    V+ 
Sbjct: 300 LAFRPLD--FIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVG 357

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +          F  + 
Sbjct: 358 VEGDAGLVARAKENAQRNGLDNAQ---FHAADLTQDQRSAPWMRQ---------GFDKLL 405

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 406 LDPPRSGALEVLQQLPLKTFDRIVYVSCHPGSLARDAGYLVNDQGFTLVCAGAMDMFPHT 465

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 466 AHVESIAVFERR 477


>gi|186475730|ref|YP_001857200.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia phymatum
           STM815]
 gi|184192189|gb|ACC70154.1| RNA methyltransferase, TrmA family [Burkholderia phymatum STM815]
          Length = 473

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 149/351 (42%), Gaps = 42/351 (11%)

Query: 35  IFRSEPIH-----YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE 89
           +FR  PIH     YR RA   + H       ++   + K     D  M    ++   + +
Sbjct: 143 VFR--PIHGPSWGYRYRARLTVRHVAKKGGVLVGFHERKSSYVAD--MTSCEVLPPHVSD 198

Query: 90  MMATIR--LEPL-LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146
           M+  +R  +E L +R ++ QI+     S  A+V  I   +  +A  E  +R    LH  +
Sbjct: 199 MLVPLRHMVEALSIRDRMPQIELAVGASVTALVLRILEPI--NAADEQLLRDFADLHNVQ 256

Query: 147 YQIQLIGRANKTKI-CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
           + +Q  G  +      LDR  +D  L   G  + +R  +  FTQ N  IN  ++   L  
Sbjct: 257 FWLQPKGPDSVYPFYPLDRQ-LDYTLPEFGIRMPFRPTD--FTQVNHQINRVLVGRALRL 313

Query: 206 TKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
               + D +L+L+CG GNF+L LAR    V+ +E ++     A  N   N V+       
Sbjct: 314 LAPAKTDRVLDLFCGIGNFTLPLARISREVVGIEGSEVLTSRALDNAKENGVD------- 366

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG--------LDDATVGMVQAY 315
           S   F       R    +   DI +   F    +DPPR G         D A  G  +  
Sbjct: 367 SHTSFAC-----RNLFEVTADDIRALGHFDKYLIDPPREGALAVSKALADIAQSGEGRLP 421

Query: 316 PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
             I+Y+SCNP +L RD  +L     + ++   + + FP+T H+E   L  R
Sbjct: 422 TRIVYVSCNPATLARDAGLLVHEAGYRLKGAGVVNMFPHTSHVESIALFER 472


>gi|313886024|ref|ZP_07819762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924554|gb|EFR35325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 493

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 20/194 (10%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235
           L YR    SF Q N+     + E V    + + GD  + +LY G G  +  LA+    V+
Sbjct: 297 LRYRIGPKSFYQTNSRQAERLYEKVREYAQ-LTGDEVVYDLYTGAGTIANYLAQSCRSVI 355

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKT 294
            +E    +VE A  N   N + N        K              L D  + ++ R   
Sbjct: 356 GIEYVPEAVEDAFVNRDQNGITNATFYAGDMKAI------------LTDDFVAAHGRPDV 403

Query: 295 IFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
           +  DPPR+G+D   V ++ +A P  I+Y+SCNP +  RDL++L     +   R    D F
Sbjct: 404 LVTDPPRAGMDTPVVDVILRAAPQRIVYVSCNPATQARDLALLMAEGQYRAVRACAVDMF 463

Query: 351 PYTRHMECGVLLVR 364
           P+T H+E   LL +
Sbjct: 464 PHTHHVETVALLSK 477


>gi|146300255|ref|YP_001194846.1| RNA methyltransferase [Flavobacterium johnsoniae UW101]
 gi|146154673|gb|ABQ05527.1| RNA methyltransferase, TrmA family [Flavobacterium johnsoniae
           UW101]
          Length = 470

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 118/283 (41%), Gaps = 36/283 (12%)

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI---QLI 152
             P   + L +   + + S   I+ LI     D A RE  +   D L+ +  QI   Q +
Sbjct: 205 FNPREHSGLLRTLMIRTASTGEIMVLIQFFEDDKANRELVL---DHLYEKFPQITSLQYV 261

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLA 204
             A +     D+D         GR  I  ++E         SF Q N+    + L  +  
Sbjct: 262 VNAKQNDTIYDQDI----KLYKGRNYILEEMEGLKFSINAKSFYQTNSD-QAYELYKITR 316

Query: 205 ATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              G+ G+  + +LY G G  +  +++   +V+ VE    ++  A+ N   N++ N +  
Sbjct: 317 DYAGLTGEETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAILDAKANAERNNITNCEFF 376

Query: 263 RMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHIL 319
               K  F +A            I  H  +   I  DPPR G+  A +  +   A   ++
Sbjct: 377 VGDMKVVFNEAF-----------IAQHG-KPDVIITDPPRDGMHAAVIDQILKIAPKKVV 424

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           Y+SCN  +  RDL+++   + + R+   D FP T H+E  VLL
Sbjct: 425 YVSCNSATQARDLALMDEKYKVTRVRPVDMFPQTHHVENVVLL 467


>gi|77406146|ref|ZP_00783219.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
 gi|77175269|gb|EAO78065.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
          Length = 453

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+    V  VE+ + +V  A+ N   N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ V          I YISCN  ++ R
Sbjct: 368 WLKE------------GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + + ++   D FP T H+EC  LL R
Sbjct: 416 DIKLFEELGYHLVKIQPVDLFPMTHHVECVALLQR 450


>gi|77413832|ref|ZP_00790011.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
 gi|77160132|gb|EAO71264.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
          Length = 453

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+    V  VE+ + +V  A+ N   N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ V          I YISCN  ++ R
Sbjct: 368 WLKE------------GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + + ++   D FP T H+EC  LL R
Sbjct: 416 DIKLFEELGYHLVKIQPVDLFPMTHHVECVALLQR 450


>gi|170056918|ref|XP_001864248.1| 23S rRNA methyltransferase [Culex quinquefasciatus]
 gi|167876535|gb|EDS39918.1| 23S rRNA methyltransferase [Culex quinquefasciatus]
          Length = 619

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 20/165 (12%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  +L++ CG G   L  A+H  +VL VEI   ++  A +N   N + N K    ++ + 
Sbjct: 418 QTSILDICCGTGTIGLCFAKHCKQVLGVEIVAEAIADATHNAKENGIENCKFYTGNADDL 477

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPD 326
             ++ R    N  KD D+         VDPPR+GL   ++  +   +    ++Y+SC+P 
Sbjct: 478 ITSLVRNA--NVQKDEDL------VAIVDPPRAGLHIRSITQLRNARGLNRLIYVSCSPQ 529

Query: 327 SLCRDLS-ILSTTHTIERLALF--------DQFPYTRHMECGVLL 362
           S  ++ + ++     + R   F        D FP+T H E  VL 
Sbjct: 530 SAVKNWADLMRPRSKVMRGGPFMPKRAIPVDLFPHTPHAELIVLF 574


>gi|163732989|ref|ZP_02140433.1| RNA methyltransferase, putative [Roseobacter litoralis Och 149]
 gi|161393524|gb|EDQ17849.1| RNA methyltransferase, putative [Roseobacter litoralis Och 149]
          Length = 408

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q        +L  V   T+G  G +++L+ G G F+L LARH + V AVE     +
Sbjct: 237 GAFLQATLHGEAALLSAVREITRG-AGRIVDLFAGCGTFALPLARHSE-VHAVEGDGDMI 294

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A   +    H + +K V   +++     RR      L  +D        + +DPPR+G 
Sbjct: 295 AA--LDAGWRHADGLKNVTTETRDL---FRRPLVPMELTKVD-------AVVLDPPRAGA 342

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +   V + +A  P + Y+SCNP +  RD ++L +  + ++ + + DQF ++ H+E
Sbjct: 343 EAQVVELAKADVPRLAYVSCNPVTFARDAAVLCAAGYVLDWVQVVDQFRWSAHVE 397


>gi|167581700|ref|ZP_02374574.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           thailandensis TXDOH]
          Length = 465

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTS 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 347 RALANAKENGVDG-------HTSFASRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 396 AVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 456 VESIALFER 464


>gi|295394774|ref|ZP_06804989.1| TrmA family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972370|gb|EFG48230.1| TrmA family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 417

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 22/153 (14%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           ++GD+ +L+CG G  ++++AR    RV  VE +  ++E+AR N            + +  
Sbjct: 275 VRGDVADLFCGAGLLAVMVARETGARVWGVEGSALAIESARSN-----------AKRAGV 323

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325
           + T  + R  + + L   D       T+ VDPPR+GLD A + ++ +     ++Y+SC+ 
Sbjct: 324 DATFDVGRVEKLDALTGAD-------TVVVDPPRAGLDPAVIRLIASSTCGRVVYVSCDG 376

Query: 326 DSLCRDLSILSTTHTIER-LALFDQFPYTRHME 357
            +  RD   L  +    R +  FD FP T H+E
Sbjct: 377 ATFSRDAQRLQNSGFQCRDIQAFDLFPLTAHVE 409


>gi|260583348|ref|ZP_05851121.1| predicted protein [Haemophilus influenzae NT127]
 gi|260093619|gb|EEW77534.1| predicted protein [Haemophilus influenzae NT127]
          Length = 80

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 46/79 (58%)

Query: 45  MRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL 104
           MRAEF +WHD  DLYHIMFDQ TK+R R+D F   + LIN +M  ++  ++ + L     
Sbjct: 1   MRAEFRVWHDQGDLYHIMFDQATKQRYRVDSFPIANQLINQMMQAILPLLKAKDLTHLFF 60

Query: 105 FQIDYLTSQSDQAIVTLIY 123
               YL    +  I+ LIY
Sbjct: 61  HNAYYLEIGENFIIIRLIY 79


>gi|327461982|gb|EGF08311.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 456

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFGNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + +  +   D F +T   E  V L ++ S
Sbjct: 416 DLVKLSQVYDVHYIQSVDMFSHTARTEAVVKLSKRDS 452


>gi|66518990|ref|XP_396538.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Apis
           mellifera]
          Length = 568

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 28/212 (13%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           Y++E+L      + +R    +F Q N  G  V     +  A   +   LL++ CG G   
Sbjct: 361 YIEEKLL----DMKFRISPQAFFQVNTLGAQVLYKAAIDLAKPNVDTALLDICCGTGTIG 416

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  +++   V  +E+ + +++ A+ N+ AN ++N +     +++    + R     R   
Sbjct: 417 LAFSKYCGEVFGLEMIEDAIKDAKENVIANKISNCEFFVGKAEDILSPVIR-----RTTK 471

Query: 285 IDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341
            DI +       VDPPR+GL      T+   +    ++YISC+P +  R+L  L+   + 
Sbjct: 472 PDIIA------IVDPPRAGLHQRALLTIRKAKKLSRLIYISCDPRAAMRNLIDLARPISK 525

Query: 342 E---------RLALFDQFPYTRHMECGVLLVR 364
           +         +    D FPYT+H E  + L R
Sbjct: 526 QYVGEPMVPVKAVAVDMFPYTKHCELVLCLER 557


>gi|332687203|ref|YP_004456977.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC
           35311]
 gi|332371212|dbj|BAK22168.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC
           35311]
          Length = 212

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   + +AR    V  ++    ++E A+ N  A  VN       ++  + + 
Sbjct: 69  IIDAYCGVGTIGISIARKVKEVRGMDTIPQAIEDAKQN--AKKVN-------ATNTYYEV 119

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E+   +  +     +    I VDPPR GLD   +  +  +P   ++YISCN  +L R
Sbjct: 120 GNAEKLLPKWLE---QGFIPDGIIVDPPRVGLDKKLLQTILNFPPKKLVYISCNVSTLAR 176

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+    ++ L   D FP T   E    L RK
Sbjct: 177 DLVSLTKVFKVDYLQSIDMFPQTARCEVVAKLTRK 211


>gi|240274747|gb|EER38262.1| tRNA(m5U54)methyltransferase [Ajellomyces capsulatus H143]
          Length = 562

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 27/165 (16%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L ++I+  S+EAAR N  AN + N       +    + 
Sbjct: 399 LLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARANKLANTGFAAADAAAIFK- 457

Query: 273 MRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                        D+     KT+ V DPPR G D+  +  + +Y    ++Y+SCN  +  
Sbjct: 458 -------------DVPYPPDKTLLVIDPPRKGCDNNFLQQLLSYGPARVVYVSCNVHTQA 504

Query: 330 RDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD+ +L            + IE +  FD FP T H+E GV ++ K
Sbjct: 505 RDVGVLVQGGNFKGEEVRYEIESIKGFDFFPQTGHVE-GVAILNK 548


>gi|170039429|ref|XP_001847537.1| RNA m5u methyltransferase [Culex quinquefasciatus]
 gi|167863014|gb|EDS26397.1| RNA m5u methyltransferase [Culex quinquefasciatus]
          Length = 622

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 20/165 (12%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  +L++ CG G   L  A+H  +VL VEI   ++  A +N   N + N K    ++ + 
Sbjct: 421 QTSILDICCGTGTIGLCFAKHCKQVLGVEIVAEAIADATHNAKENGIENCKFYTGNADDL 480

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPD 326
             ++ R    N  KD D+         VDPPR+GL   ++  +   +    ++Y+SC+P 
Sbjct: 481 ITSLVRNA--NVQKDEDL------VAIVDPPRAGLHIRSITQLRNARGLNRLIYVSCSPQ 532

Query: 327 SLCRDLS-ILSTTHTIERLALF--------DQFPYTRHMECGVLL 362
           S  ++ + ++     + R   F        D FP+T H E  VL 
Sbjct: 533 SAVKNWADLMRPRSKVMRGGPFMPKRAIPVDLFPHTPHAELIVLF 577


>gi|329895829|ref|ZP_08271185.1| hypothetical RNA methyltransferase [gamma proteobacterium IMCC3088]
 gi|328922124|gb|EGG29482.1| hypothetical RNA methyltransferase [gamma proteobacterium IMCC3088]
          Length = 390

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 39/273 (14%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-IGRANKT 158
           L+A    + ++ ++SDQ IV +    +L D          +AL AR  +  L IGR  KT
Sbjct: 150 LKASADALGFVAARSDQ-IVDVEQCVVLSDH--------NNALLARIREQDLGIGRRRKT 200

Query: 159 KICLD-RDYVD-ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215
            + +D  D VD E ++   R          F Q N   N  ML W+     G+     LE
Sbjct: 201 WVTIDIADEVDFEHISFNQRL--------PFRQGNTAQNQEMLGWLTKVLHGLNCKRALE 252

Query: 216 LYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           L+ G+GN +  L A   D +  VE+   +++  R ++             S+K F   + 
Sbjct: 253 LFAGSGNLTQALVASGVDDITVVEVVPEALDTLRQSLP------------STKAFALDLF 300

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDL 332
            + + + L  +   S   + + +DPPR G  L    V  + +   I+YISC+  S  RD+
Sbjct: 301 DKTKLSELVSL---SADAELLLLDPPRDGFALLGQLVSQLPSLKSIIYISCDLASFERDV 357

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++L    ++  L   D +P T H+E   +  RK
Sbjct: 358 ALLCDEFSLLELQPLDMYPQTPHVELMSVWSRK 390


>gi|253688084|ref|YP_003017274.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259495633|sp|C6DEQ3|RUMB_PECCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|251754662|gb|ACT12738.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 376

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 18/156 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A    R+  +EI+  ++  AR +     +  V+   + S +F  
Sbjct: 236 SMWDLFCGVGGFGLHCASPEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
                 E                + V+PPR G+       +   A  +ILY SCN +S+ 
Sbjct: 296 GKAEIPEL---------------VLVNPPRRGIGSELCTYLSRMAPDYILYSSCNAESMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +D++ L T +   R+ LFD FP+T H E   LL R+
Sbjct: 341 KDMTEL-TNYRALRVQLFDMFPHTAHYEVLTLLKRE 375


>gi|117921747|ref|YP_870939.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. ANA-3]
 gi|143582907|sp|A0L0G4|RUMB_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|117614079|gb|ABK49533.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp. ANA-3]
          Length = 384

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 23/186 (12%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            SF Q N  +   +     EWV          L +L+CG G F L  A     +  +EI 
Sbjct: 215 KSFFQTNPQVAAKLYQTAREWV---ADFAPASLWDLFCGVGGFGLHCAAKDIPLTGIEIE 271

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +     ++ V+ + + S +F +              +    + + I V+PP
Sbjct: 272 AEAIACAKMSAQLMGLDKVEFMALDSTDFAKG-------------EAAQTKPELIIVNPP 318

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R G+ ++    +  +    ILY SCNP +L +DL  +   + + ++ LFD FP++ H E 
Sbjct: 319 RRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHIR-GYRLTKVQLFDLFPHSDHFEV 377

Query: 359 GVLLVR 364
             LLV+
Sbjct: 378 LALLVK 383


>gi|221135234|ref|ZP_03561537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Glaciecola sp.
           HTCC2999]
          Length = 484

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 21/186 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           + F Q NA +N  M+   +        D +++L+CG+GNFS+ +A+  + VL +E  +  
Sbjct: 314 DDFIQVNASLNQAMIYTSIDLLALAPDDRVVDLFCGSGNFSVPIAKQTEYVLGIEGVEAM 373

Query: 244 VEAARYNIAANHVNNVKIVR--MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           V+ A     A+ V+NV  +   +++ E   A++  +  N+L              +DP R
Sbjct: 374 VQQANQGAVASGVDNVTFLHADLTTSEAMHAIKAAK-CNKL-------------LLDPSR 419

Query: 302 SGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358
            G   A +  V  Q +  I+Y+SCNP S   D+  +L      +    FD F  T H E 
Sbjct: 420 EGA-KAILAQVDLQQFERIVYVSCNPQSWVHDIQLLLDAGFACQHTQFFDMFAGTTHTEL 478

Query: 359 GVLLVR 364
             +  R
Sbjct: 479 VSVFTR 484


>gi|325679453|ref|ZP_08159035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
 gi|324108852|gb|EGC03086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
          Length = 397

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   ++ A++   V  VE+ K +   A  N   N + N+K     + +F QA
Sbjct: 247 VIDAYCGTGTIGIICAKNGAEVTGVELNKSACRDAHKNAELNGLENIKFCNDDAGKFMQA 306

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           M  + E       D+       + +DPPR+G     +G     A   I+Y+SC  ++L R
Sbjct: 307 MASKGE-----GCDV-------LIMDPPRAGASREFIGCAGRLAPQKIVYVSCKIETLER 354

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL       + +  +   D FP+T  +E   LL R
Sbjct: 355 DLKAFRREGYKVTYIQPVDMFPHTMGIETVCLLER 389


>gi|225558321|gb|EEH06605.1| tRNA methyltransferase [Ajellomyces capsulatus G186AR]
          Length = 562

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 25/164 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L ++I+  S+EAAR N  AN + N       +      
Sbjct: 399 LLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARANKLANTGFAAADAAAI--- 455

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+     +   + +DPPR G D+  +  + +Y    ++Y+SCN  +  R
Sbjct: 456 ---------FKDVPYPPDK-TLLIIDPPRKGCDNNFLQQLLSYGPARVVYVSCNVHTQAR 505

Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +L            + IE +  FD FP T H+E GV ++ K
Sbjct: 506 DVGVLVQGGNFKGEEVRYEIESIKGFDFFPQTGHVE-GVAILNK 548


>gi|325094100|gb|EGC47410.1| tRNA(m5U54)methyltransferase [Ajellomyces capsulatus H88]
          Length = 562

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 27/165 (16%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L ++I+  S+EAAR N  AN + N       +    + 
Sbjct: 399 LLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARANKLANTGFAAADAAAIFK- 457

Query: 273 MRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                        D+     KT+ V DPPR G D+  +  + +Y    ++Y+SCN  +  
Sbjct: 458 -------------DVPYPPDKTLLVIDPPRKGCDNNFLQQLLSYGPARVVYVSCNVHTQA 504

Query: 330 RDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD+ +L            + IE +  FD FP T H+E GV ++ K
Sbjct: 505 RDVGVLVQGGNFKGEEVRYEIESIKGFDFFPQTGHVE-GVAILNK 548


>gi|166712829|ref|ZP_02244036.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 444

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 18/192 (9%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +R ++  F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V+ 
Sbjct: 267 LAFRPLD--FIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N   N ++N +     + + TQ  R      +  D          + 
Sbjct: 325 VEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQGLD---------KLL 372

Query: 297 VDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTH--TIERLALFDQFPYT 353
           +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP+T
Sbjct: 373 LDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHT 432

Query: 354 RHMECGVLLVRK 365
            H+E   +  R+
Sbjct: 433 AHVESIAVFERR 444


>gi|308177784|ref|YP_003917190.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307745247|emb|CBT76219.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 440

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 137/327 (41%), Gaps = 56/327 (17%)

Query: 70  RMRIDYFM--PGSLLINALMIEMMATIRLEPLLR-----AKLFQIDY---------LTSQ 113
           R R+ Y +   G+L ++A     + +I   PL         L+ +DY         ++SQ
Sbjct: 139 RTRMSYSVDAQGNLAMSAFRSNELISISQMPLAHPAIEATGLYSVDYSGIERVEAAVSSQ 198

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            D+ ++ L+     D A  + A +  + ++   +  Q  G A   K  L         T+
Sbjct: 199 DDRTVLILLA-EARDGAAAKVAKQFPEGVNVASFS-QHGGSAADGKGSLQ--------TL 248

Query: 174 AGRT-LIYRQIENSFTQPNAGI-NVH------MLEWVLAATKGIQGD-LLELYCGNGNFS 224
           AG   LI + +   F     G   VH      +   V+  T+   G+ + +LY G G FS
Sbjct: 249 AGSAHLIEKVLGEKFRITGEGFWQVHREAASLLSSRVIELTEPAAGEQIADLYAGAGLFS 308

Query: 225 LVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           + LA+      RV ++E A  +   A+ N+               ++++QA        R
Sbjct: 309 VPLAKAVGTGGRVFSIEGAPGTHADAKKNL---------------RDYSQATVIRGRVER 353

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTT 338
           +     H      + +DPPR+GL+      +       I Y+SC+P +  RD + ++   
Sbjct: 354 VLRQVAHDATLDAVVLDPPRTGLEKQVAAELASSGVSRICYVSCDPAAFARDTARLMGRG 413

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ L + D +P+T HME   L VR+
Sbjct: 414 YELDHLEIHDLYPHTHHMESIGLFVRR 440


>gi|315656863|ref|ZP_07909750.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492818|gb|EFU82422.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 347

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 13/162 (8%)

Query: 215 ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA--ANHVNNVKIVRMSSKEFTQ 271
           +LYCG G F+  L+     +V  VE+  P+++ A++ +   A+    V +   +  + T 
Sbjct: 180 DLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNKNDGTP 239

Query: 272 AMRREREFNRLKDIDIHSYRFKT-------IFVDPPRSGLDDATVGMVQ--AYPHILYIS 322
                         D   +           + V+PPR GL       ++    PH++Y S
Sbjct: 240 NTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPHLIYSS 299

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           C P++L  DL  +  ++ I    L D FP+T H+EC VL+ +
Sbjct: 300 CFPETLVEDLRRMR-SYQIRAAKLVDMFPHTSHVECVVLMSK 340


>gi|148927467|ref|ZP_01810970.1| (Uracil-5)-methyltransferase [candidate division TM7 genomosp.
           GTL1]
 gi|147887191|gb|EDK72658.1| (Uracil-5)-methyltransferase [candidate division TM7 genomosp.
           GTL1]
          Length = 318

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 25/157 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA--NHVNNVKIVRMSSKEFT 270
           +++LY G G+  L +      +  VEI+  +V   R N+ A   H N V     S+ E+ 
Sbjct: 183 VIDLYSGVGSIGLTIGGKNPTL--VEISGSAVAEMRRNLRALGRHANIVHASSESALEYI 240

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSL 328
            +                     TI VDPPR+GL +  +   +++A   I+Y+SCNP + 
Sbjct: 241 NSN-------------------ATIIVDPPRAGLHEKVIQELLIKAPERIIYLSCNPVTQ 281

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RD+ +LS T+ I     ++ FP T H+E  V+L RK
Sbjct: 282 ARDVMMLSETYGIREHIGYNFFPRTPHIEHLVILDRK 318


>gi|300824000|ref|ZP_07104122.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           119-7]
 gi|331667233|ref|ZP_08368098.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA271]
 gi|331676647|ref|ZP_08377343.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H591]
 gi|300523511|gb|EFK44580.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           119-7]
 gi|331065589|gb|EGI37482.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA271]
 gi|331075336|gb|EGI46634.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H591]
          Length = 375

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVMTLLVKQ 375


>gi|146311031|ref|YP_001176105.1| 23S rRNA methyluridine methyltransferase [Enterobacter sp. 638]
 gi|167012639|sp|A4W8M4|RUMB_ENT38 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|145317907|gb|ABP60054.1| 23S rRNA m(5)U-747 methyltransferase [Enterobacter sp. 638]
          Length = 375

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A     +  +EI+  ++  A+ + A   + ++    + S EF   
Sbjct: 237 MWDLFCGVGGFGLHCATPQMTLTGIEISPEAIACAKQSAAQLGLTDLHFQALDSAEFATG 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
             R  E                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGRVPEL---------------VLVNPPRRGIGKTLCDYLSQMAPDFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   L   + +ER+ LFD FP+T H E   LLV+ 
Sbjct: 342 DFGHLPG-YRVERVQLFDMFPHTAHYEVLTLLVKS 375


>gi|308186221|ref|YP_003930352.1| hypothetical RNA methyltransferase ybjF [Pantoea vagans C9-1]
 gi|308056731|gb|ADO08903.1| hypothetical RNA methyltransferase ybjF [Pantoea vagans C9-1]
          Length = 376

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 18/156 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L+CG G F L  A     +  +EI+  +++ AR +     +  V+   + S  F  
Sbjct: 235 SMWDLFCGVGGFGLHCATPEMELTGIEISAEAIKCARRSAEMLGLEKVQFAALDSTAFAT 294

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLC 329
                 +                + V+PPR G+ +A    + Q  P ++LY SCNP ++ 
Sbjct: 295 GRDAVPQL---------------VLVNPPRRGMGEALCDYLSQMAPDYLLYSSCNPQTMA 339

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +D++ L+  + + ++ LFD FP+T H E   LL R+
Sbjct: 340 QDIARLND-YEVTKVQLFDMFPHTAHFEVLTLLTRR 374


>gi|269925291|ref|YP_003321914.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269788951|gb|ACZ41092.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 405

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 23/183 (12%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
           +R    SF Q N     +++   L   + ++G  +++ YCG G F+  +A   +  + +E
Sbjct: 233 FRVSATSFFQVNTLQAENLIRIALDELEPLEGKTVVDAYCGVGTFTRFIAERAELTIGIE 292

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            +  +    RYN+       ++             R E+E  RL +          + +D
Sbjct: 293 ESPSATADFRYNMQGLKAKLIE------------GRAEKELGRLPN------NIDRLLLD 334

Query: 299 PPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTR 354
           PPR+G + +A   +++  P  I+Y+SC+P +L RDL +L +T  + ++++   D FP T 
Sbjct: 335 PPRTGCEPEALETILELAPEKIVYVSCDPATLARDLKVLCSTGAYRLKKVQPVDMFPQTF 394

Query: 355 HME 357
           H+E
Sbjct: 395 HIE 397


>gi|328946804|gb|EGG40941.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1087]
          Length = 456

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 14/157 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A+    +  ++I   ++E A+ N       N      +++E    
Sbjct: 308 LIDAYCGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFGNTLYEAGTAEEIIPR 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
              E             YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L R
Sbjct: 368 WYAE------------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLAR 415

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  LS  + +  +   D F +T   E  V L ++ S
Sbjct: 416 DLVKLSQVYDVHYIQSVDMFSHTARTEAVVKLSKRDS 452


>gi|187478468|ref|YP_786492.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella avium 197N]
 gi|123514823|sp|Q2L016|RUMA_BORA1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|115423054|emb|CAJ49585.1| 23s rRNA (uracil-5-)-methyltransferase [Bordetella avium 197N]
          Length = 476

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 29/195 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G  + YR  +  FTQ N  IN  M+   L   +    D + +L+CG GNF+L LA     
Sbjct: 253 GLRMPYRPTD--FTQVNHAINRSMVSRALKLLEVQPTDRVADLFCGLGNFTLPLATQGRE 310

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-- 291
            + VE +K   + A              +  +++   +   R    N L ++D+   R  
Sbjct: 311 AVGVEGSKALTDRA--------------LEAAARHGLEGRTRFATLN-LFEVDVSWLRGL 355

Query: 292 --FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIE 342
             F  + +DPPR G       + Q  P      I+Y+SCNP +L RD +I+     + ++
Sbjct: 356 GYFDRMLIDPPREGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVHEGGYVLK 415

Query: 343 RLALFDQFPYTRHME 357
              + + FP+T H+E
Sbjct: 416 AAGVINMFPHTGHVE 430


>gi|322376702|ref|ZP_08051195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M334]
 gi|321282509|gb|EFX59516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M334]
          Length = 451

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+    V  VE+   +VE +  N   N+++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKLVKEVYGVEVIPEAVENSEKNAQLNNISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
           M+     + LKD      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----SWLKD----GIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMAR 415

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+EC  LLV+
Sbjct: 416 DIKLYRELGYELKKVQPVDLFPQTHHVECVALLVK 450


>gi|218699235|ref|YP_002406864.1| 23S rRNA methyluridine methyltransferase [Escherichia coli IAI39]
 gi|226725403|sp|B7NPF5|RUMB_ECO7I RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|218369221|emb|CAR16976.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli IAI39]
          Length = 375

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFASA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|194433128|ref|ZP_03065410.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae
           1012]
 gi|194418625|gb|EDX34712.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae
           1012]
 gi|320177807|gb|EFW52793.1| 23S rRNA methyluridine methyltransferase [Shigella boydii ATCC
           9905]
 gi|332088882|gb|EGI93994.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella boydii
           5216-82]
 gi|332091027|gb|EGI96117.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae
           155-74]
          Length = 375

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVMTLLVKQ 375


>gi|94994593|ref|YP_602691.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|94548101|gb|ABF38147.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|332001949|gb|AED99120.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
          Length = 463

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 291 SFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N A N + N   +  +++       ++              +   I VDPPR GL
Sbjct: 351 RDAQQNAALNGITNAYFIADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC  L
Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVECVSL 458

Query: 362 LVRK 365
           L ++
Sbjct: 459 LEKR 462


>gi|302673836|ref|XP_003026604.1| hypothetical protein SCHCODRAFT_62068 [Schizophyllum commune H4-8]
 gi|300100287|gb|EFI91701.1| hypothetical protein SCHCODRAFT_62068 [Schizophyllum commune H4-8]
          Length = 425

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 27/201 (13%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWV-------LAATKGIQGDLLELYCGNGNFSLVLARHF 231
           I+    +SF Q N  +   +  +V        ++T  +   L++ YCG G F++ LA HF
Sbjct: 231 IFEYPAHSFFQNNNAVLTPLTTYVRDALIPESSSTPSLLTHLVDTYCGAGLFAIALAPHF 290

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V  +E++  S+++A  N   N +        + K   +A      F+ +KD       
Sbjct: 291 ATVAGIELSAESIKSATRNAELNSLP-------ADKCTFRAGDAADIFSAVKDFPAER-- 341

Query: 292 FKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLS--------ILSTTHTI 341
              + +DPPR G D+  +  +VQ  P  ++Y+SCN  +  RD+         +    + +
Sbjct: 342 -TAVVIDPPRKGCDEPFLRQLVQFRPAAVVYVSCNVHTQARDVGWVLREMEKVEGKRYRV 400

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           E +  FD FP T H+E   +L
Sbjct: 401 ESVRGFDLFPQTAHVESVAVL 421


>gi|215485990|ref|YP_002328421.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312969074|ref|ZP_07783281.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           2362-75]
 gi|254766925|sp|B7UMV1|RUMB_ECO27 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|215264062|emb|CAS08404.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286476|gb|EFR14389.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           2362-75]
 gi|323190681|gb|EFZ75950.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           RN587/1]
          Length = 375

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFASA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|194428177|ref|ZP_03060720.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B171]
 gi|194413737|gb|EDX30016.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B171]
 gi|323159681|gb|EFZ45660.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           E128010]
          Length = 375

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|331266416|ref|YP_004326046.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
 gi|326683088|emb|CBZ00705.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
          Length = 452

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N   N ++N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAELNGISNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMEC 358
           D+ +     + + ++   D FP T H+EC
Sbjct: 416 DIKLYQELGYELRKVQPVDLFPQTHHVEC 444


>gi|56807774|ref|ZP_00365630.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus pyogenes
           M49 591]
 gi|209559589|ref|YP_002286061.1| Putative RNA methyltransferase [Streptococcus pyogenes NZ131]
 gi|209540790|gb|ACI61366.1| Putative RNA methyltransferase [Streptococcus pyogenes NZ131]
          Length = 452

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 16/184 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 280 SFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 339

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N A N + N   +  +++       ++              +   I VDPPR GL
Sbjct: 340 RDAQQNAALNGITNAYFIADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 387

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+EC  L
Sbjct: 388 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQPVDLFPQTHHVECVSL 447

Query: 362 LVRK 365
           L ++
Sbjct: 448 LEKR 451


>gi|121602231|ref|YP_988721.1| tRNA (Uracil-5-)-methyltransferase [Bartonella bacilliformis KC583]
 gi|120614408|gb|ABM45009.1| tRNA (Uracil-5-)-methyltransferase [Bartonella bacilliformis KC583]
          Length = 417

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 21/161 (13%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI--AANHVNNVKIVRMSSKEFTQA 272
           +L+ G G F+L +A+  + V AVE    +  AA  N+  AA     +K V    ++    
Sbjct: 270 DLFSGVGTFALRMAKKMN-VHAVE----NNGAALTNLDRAARFAKGLKTVICEKRDL--- 321

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD 331
           +RR      L+       RF ++  DPPR+G ++    + + A P ++ +SCNP +  RD
Sbjct: 322 LRRPLSTEELE-------RFDSVVFDPPRAGAEEQVSELAKTAIPRVVAVSCNPVTFARD 374

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK--PSGW 369
           LSIL S  + IE++   DQF ++ H+E   +L ++   +GW
Sbjct: 375 LSILVSGGYIIEKIIPIDQFLWSPHVEIVAILNKRKAKAGW 415


>gi|228469545|ref|ZP_04054538.1| 23S rRNA-methyltransferase RumA [Porphyromonas uenonis 60-3]
 gi|228308895|gb|EEK17570.1| 23S rRNA-methyltransferase RumA [Porphyromonas uenonis 60-3]
          Length = 493

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 24/206 (11%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223
           Y++E +      L YR    SF Q N+     + E V    + ++GD  + +LY G G  
Sbjct: 289 YIEENM----HGLRYRIGPKSFYQTNSRQAERLYEKVREYAQ-LKGDEVVYDLYTGAGTI 343

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +  LA+    V+ +E    +VE A  N   N + N        K              L 
Sbjct: 344 ANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNGITNATFYAGDMKAI------------LT 391

Query: 284 DIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSIL--STT 338
           D  + ++ R   +  DPPR+G+D   V ++ +A P  I+Y+SCNP +  RDL++L     
Sbjct: 392 DDFVAAHGRPDVLVTDPPRAGMDAPVVEVILRAAPQRIVYVSCNPATQARDLALLMAEGQ 451

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +   +    D FP+T H+E   LL +
Sbjct: 452 YRAVKACAVDMFPHTHHVETVALLSK 477


>gi|218548378|ref|YP_002382169.1| 23S rRNA methyluridine methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|226725409|sp|B7LN23|RUMB_ESCF3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|218355919|emb|CAQ88534.1| 23S rRNA m(5)U747 methyltransferase [Escherichia fergusonii ATCC
           35469]
          Length = 375

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F   
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATT 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMTK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  LS  + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELSG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|183598310|ref|ZP_02959803.1| hypothetical protein PROSTU_01699 [Providencia stuartii ATCC 25827]
 gi|188020483|gb|EDU58523.1| hypothetical protein PROSTU_01699 [Providencia stuartii ATCC 25827]
          Length = 375

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L +L+CG G F L  A    ++  +EI+ P++  A+ +     + +V+   + S +F  
Sbjct: 236 SLWDLFCGVGGFGLHCAEKQTQLTGIEISAPAIACAKQSAQELGLQHVEFQALDSTKFAT 295

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
           A     +                + V+PPR G+       +      +ILY SCN  ++ 
Sbjct: 296 AKGNIPQL---------------VLVNPPRRGIGKELCEYLSTMRPNYILYSSCNAQTMA 340

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +D+  L   + + ++ LFD FP+T H E   LLV+
Sbjct: 341 KDIEQLE-GYAVSKVQLFDMFPHTAHYEVIALLVK 374


>gi|210623379|ref|ZP_03293776.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275]
 gi|210153640|gb|EEA84646.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275]
          Length = 458

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G+   ++A    +V  +EI + +V AA  N   N ++N + +    K     
Sbjct: 311 VFDLYSGTGSIGQLMAEKAKKVYGIEIIEEAVVAANENAKLNGLDNCEFIAGDVK----- 365

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                  + +K +D+   +   I VDPPR G+    +  +  +    I+YISCNP +L  
Sbjct: 366 -------DTVKSLDV---KPDLIIVDPPRPGIHKQAIKDICDFGAKEIVYISCNPKTLVD 415

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL   +   +  E++   D FP T H E  V L +
Sbjct: 416 DLKDFIGYGYMPEKVKCMDMFPNTPHCESVVKLYK 450


>gi|145589476|ref|YP_001156073.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047882|gb|ABP34509.1| 23S rRNA m(5)U-1939 methyltransferase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 476

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+L+CG GNF+L LAR    VL +E     +E       AN V+N    + S       
Sbjct: 324 VLDLFCGIGNFTLPLARKAKTVLGIE----GLETLTTRAKANAVHNGLADKAS------- 372

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--------ILYISCN 324
             R   F    D      + +   +DPPR G  +    + + +          I+Y+SCN
Sbjct: 373 FMRSDLFEVTPDTIASWGKAERWLMDPPREGAMEICKALAELHEEDNLLLPQRIVYVSCN 432

Query: 325 PDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
           P +L RD  IL     +T++   + + FP+T H+E
Sbjct: 433 PKTLARDAEILCHQAGYTLQSAGVVNMFPHTSHVE 467


>gi|315186207|gb|EFU19969.1| (Uracil-5)-methyltransferase [Spirochaeta thermophila DSM 6578]
          Length = 367

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 74/167 (44%), Gaps = 24/167 (14%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LE V+ A  G  G+  +LY G G FS VLAR   R   VE A  S+  A   +       
Sbjct: 219 LEGVVPAGDG--GEAWDLYAGVGVFSQVLARRGWRPRLVESAVASLGYAEQALG----GG 272

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYP 316
              V +S++ F +  R                    +  DPPR GL          Q  P
Sbjct: 273 AAYVGVSAERFLRGYR--------------GVVPGMVVADPPRGGLSRTVRAFFEGQGVP 318

Query: 317 HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME-CGVL 361
            ++YISCN  +  RD++ ++   + + RLA FD +P T HME  GVL
Sbjct: 319 LLVYISCNTATFARDVAHLVWAGYRLTRLAFFDFYPQTPHMEVAGVL 365


>gi|331672398|ref|ZP_08373189.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA280]
 gi|331070593|gb|EGI41957.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA280]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|325496801|gb|EGC94660.1| 23S rRNA methyluridine methyltransferase [Escherichia fergusonii
           ECD227]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|222032588|emb|CAP75327.1| 23S rRNA [Escherichia coli LF82]
 gi|312945376|gb|ADR26203.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|91209893|ref|YP_539879.1| 23S rRNA methyluridine methyltransferase [Escherichia coli UTI89]
 gi|110641061|ref|YP_668791.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 536]
 gi|117623039|ref|YP_851952.1| 23S rRNA methyluridine methyltransferase [Escherichia coli APEC O1]
 gi|191172086|ref|ZP_03033630.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli F11]
 gi|218557763|ref|YP_002390676.1| 23S rRNA methyluridine methyltransferase [Escherichia coli S88]
 gi|237707177|ref|ZP_04537658.1| 23S rRNA methyluridine methyltransferase [Escherichia sp.
           3_2_53FAA]
 gi|300991847|ref|ZP_07179672.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           200-1]
 gi|122424458|sp|Q1RE66|RUMB_ECOUT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|122958455|sp|Q0TJI9|RUMB_ECOL5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|143582665|sp|A1A998|RUMB_ECOK1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725401|sp|B7MHG3|RUMB_ECO45 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|91071467|gb|ABE06348.1| hypothetical RNA methyltransferase YbjF [Escherichia coli UTI89]
 gi|110342653|gb|ABG68890.1| hypothetical RNA methyltransferase YbjF [Escherichia coli 536]
 gi|115512163|gb|ABJ00238.1| hypothetical RNA methyltransferase YbjF [Escherichia coli APEC O1]
 gi|190907613|gb|EDV67208.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli F11]
 gi|218364532|emb|CAR02214.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli S88]
 gi|226898387|gb|EEH84646.1| 23S rRNA methyluridine methyltransferase [Escherichia sp.
           3_2_53FAA]
 gi|294492584|gb|ADE91340.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           IHE3034]
 gi|300305457|gb|EFJ59977.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           200-1]
 gi|307627732|gb|ADN72036.1| 23S rRNA methyluridine methyltransferase [Escherichia coli UM146]
 gi|315287309|gb|EFU46720.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           110-3]
 gi|320196646|gb|EFW71269.1| 23S rRNA methyluridine methyltransferase [Escherichia coli
           WV_060327]
 gi|323953437|gb|EGB49303.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H252]
 gi|323958148|gb|EGB53857.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H263]
 gi|324013021|gb|EGB82240.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           60-1]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|157156456|ref|YP_001462056.1| 23S rRNA methyluridine methyltransferase [Escherichia coli E24377A]
 gi|193064430|ref|ZP_03045511.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E22]
 gi|193069324|ref|ZP_03050279.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           E110019]
 gi|218553445|ref|YP_002386358.1| 23S rRNA methyluridine methyltransferase [Escherichia coli IAI1]
 gi|218694333|ref|YP_002402000.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 55989]
 gi|260843110|ref|YP_003220888.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260854151|ref|YP_003228042.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260867032|ref|YP_003233434.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300817042|ref|ZP_07097261.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           107-1]
 gi|300902392|ref|ZP_07120375.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           84-1]
 gi|300924468|ref|ZP_07140438.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           182-1]
 gi|301305369|ref|ZP_07211464.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           124-1]
 gi|301325867|ref|ZP_07219300.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           78-1]
 gi|167012637|sp|A7ZJS7|RUMB_ECO24 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725404|sp|B7M7D4|RUMB_ECO8A RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|254766926|sp|B7LD52|RUMB_ECO55 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|157078486|gb|ABV18194.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           E24377A]
 gi|192928892|gb|EDV82505.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E22]
 gi|192957277|gb|EDV87725.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           E110019]
 gi|218351065|emb|CAU96769.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli 55989]
 gi|218360213|emb|CAQ97763.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli IAI1]
 gi|257752800|dbj|BAI24302.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257758257|dbj|BAI29754.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|257763388|dbj|BAI34883.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300405539|gb|EFJ89077.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           84-1]
 gi|300419353|gb|EFK02664.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           182-1]
 gi|300530394|gb|EFK51456.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           107-1]
 gi|300839387|gb|EFK67147.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           124-1]
 gi|300847381|gb|EFK75141.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           78-1]
 gi|315257895|gb|EFU37863.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           85-1]
 gi|320199094|gb|EFW73691.1| 23S rRNA methyluridine methyltransferase [Escherichia coli EC4100B]
 gi|323155767|gb|EFZ41936.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           EPECa14]
 gi|323175519|gb|EFZ61114.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 1180]
 gi|323185177|gb|EFZ70542.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 1357]
 gi|323947117|gb|EGB43128.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H120]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|300935050|ref|ZP_07150082.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           21-1]
 gi|281177994|dbj|BAI54324.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|300459713|gb|EFK23206.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           21-1]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|123470775|ref|XP_001318591.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121901354|gb|EAY06368.1| hypothetical protein TVAG_151750 [Trichomonas vaginalis G3]
          Length = 534

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 25/167 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+++ CG G   L +A+   +V+ ++I K ++E A+ N   N + N + +   +++    
Sbjct: 379 LIDVCCGTGVIGLSMAKKAKKVIGIDIEKDAIEDAKKNATKNKIKNAEFIAAPAQDVLPG 438

Query: 273 M--RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA---YPHILYISCNPDS 327
           +  + E E +R+            + VDPPR GL       ++       ++YISCNP+S
Sbjct: 439 ILDQCEAEGSRV-----------VVIVDPPRDGLHKTAAKAIRECKLLKRVVYISCNPES 487

Query: 328 LCRDLSIL-------STTHTIERLALF--DQFPYTRHMECGVLLVRK 365
           L RD             T   + +  F  D FP+T  +E  +L+ R+
Sbjct: 488 LVRDSKKFLFAENNNFATQPFQPVEWFGVDLFPHTDRLELVMLMQRE 534


>gi|227534726|ref|ZP_03964775.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187482|gb|EEI67549.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 455

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 91/217 (41%), Gaps = 27/217 (12%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE--WVLAATK---GI 209
             ++++     Y+ E  T+ GRT  ++    +F Q    +N    E  + LAA     G 
Sbjct: 258 GKESRLLAGLPYIQE--TLLGRT--FQLSPQAFLQ----LNPKQTETLYTLAAKALDLGP 309

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG G   + LA+    +  ++     +  A  N  AN + N       +++ 
Sbjct: 310 HDTLIDAYCGIGTVGISLAKGNQPIYGMDTIAEGIADAEANAKANGLTNAHYSVGKAEDI 369

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
                +E              +   + VDPPR+GL+ A +  +     P  +YISCNP +
Sbjct: 370 FPKWVQE------------GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPST 417

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L RDL  L+  + ++ +   D FP T   E  V   R
Sbjct: 418 LARDLVFLTKRYKVDWIQSIDMFPQTARCEAVVKFTR 454


>gi|193669328|ref|XP_001944973.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
           [Acyrthosiphon pisum]
          Length = 650

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 125/285 (43%), Gaps = 41/285 (14%)

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
           +++ E L+   +   + +   +  ++  LI     + A   C +   D+L+ +K + +  
Sbjct: 379 SLKTEQLMLICVVHTENMEESALNSLKQLILSYFTEGAGAVCKV---DSLYFQKAKKRAA 435

Query: 153 GRANKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI- 209
           G  N   + L   + Y+ E +    + L  R    SF Q    IN    E +  A K + 
Sbjct: 436 GEGNSFPLELLHGQGYIVEEV----KGLKLRISPESFFQ----INTAASEILFDAAKDLA 487

Query: 210 ----QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
               Q  +L++ CG+G   L +A+   +V+ VEI + +V  A+ N   N + N       
Sbjct: 488 SINSQTTVLDVCCGSGTIGLSIAKDCAQVIGVEIQEEAVNMAKLNATENGITNAIFFAGK 547

Query: 266 SKEFTQAMRREREFNRLKDI-DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYI 321
           ++E    +  +REF   ++  D+         VDPPR+GL +  + +++   H   ++Y+
Sbjct: 548 AEE----VMNKREFQNPENANDV------VAIVDPPRAGLHNKAILLLRRMTHLKRLVYM 597

Query: 322 SCNPDSLCRDLSILSTTHT-IERLALF--------DQFPYTRHME 357
           SCNP    ++   LS   +  ++ A F        D FP T H E
Sbjct: 598 SCNPKGAMQNFLSLSMAESKTKQGAPFVPVKAVPVDMFPQTPHCE 642


>gi|24112229|ref|NP_706739.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri 2a str.
           301]
 gi|30062341|ref|NP_836512.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|110804856|ref|YP_688376.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri 5 str.
           8401]
 gi|50401545|sp|Q83S14|RUMB_SHIFL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|123048499|sp|Q0T8K2|RUMB_SHIF8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|24051076|gb|AAN42446.1| putative enzyme [Shigella flexneri 2a str. 301]
 gi|30040586|gb|AAP16318.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|110614404|gb|ABF03071.1| putative enzyme [Shigella flexneri 5 str. 8401]
 gi|281600182|gb|ADA73166.1| 23S rRNA (uracil-5-)-methyltransferase [Shigella flexneri 2002017]
 gi|313650234|gb|EFS14646.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri 2a
           str. 2457T]
 gi|332759770|gb|EGJ90073.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           4343-70]
 gi|332760447|gb|EGJ90736.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           2747-71]
 gi|332763075|gb|EGJ93320.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           K-671]
 gi|332768030|gb|EGJ98216.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           2930-71]
 gi|333006661|gb|EGK26160.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           VA-6]
 gi|333006961|gb|EGK26456.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           K-218]
 gi|333008832|gb|EGK28292.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           K-272]
 gi|333020141|gb|EGK39411.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           K-227]
 gi|333020973|gb|EGK40231.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           K-304]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|237738336|ref|ZP_04568817.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium mortiferum ATCC
           9817]
 gi|229420216|gb|EEO35263.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium mortiferum ATCC
           9817]
          Length = 450

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G  +++L++  ++V A+E+ + +          N + N++ +  + ++    
Sbjct: 308 IVDAYSGTGTIAMMLSKKAEKVYAIELVESATLDGMKTAGENGIENIEFINGAVED---- 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
                   ++ ++     R   I  DPPR G+++ ++          I+YISCNP +  R
Sbjct: 364 --------KMLELINAGKRVDAIIFDPPRKGIEEKSLIKTAESGIKEIVYISCNPSTFAR 415

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHMEC 358
           D  ILS   + I+ +   D FP T H E 
Sbjct: 416 DAEILSRLGYKIDEVQPVDMFPGTSHTEV 444


>gi|331656932|ref|ZP_08357894.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA206]
 gi|331055180|gb|EGI27189.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA206]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|332968888|gb|EGK07935.1| 23S rRNA (uracil-5-)-methyltransferase [Kingella kingae ATCC 23330]
          Length = 433

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 15/149 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG GNF+L +AR   +V+ +E A    + A +N   N ++N+        EF+ A
Sbjct: 289 IADLFCGLGNFTLPIARSGAQVIGIEGADFLTQRATHNAQQNGLHNI--------EFSTA 340

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
              +     ++ +      F  + +DPPR+G       +   Y    I+Y+SCNP +  R
Sbjct: 341 DLFDTTPQTIEQLGY----FDKMLLDPPRAGAYAVVQALHAPYLPKRIVYVSCNPATFAR 396

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMEC 358
           D ++L    +      + + FP+T H+E 
Sbjct: 397 DAAVLVGKGYRFSAAGIMNLFPHTAHVEA 425


>gi|33592796|ref|NP_880440.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella pertussis
           Tohama I]
 gi|50401525|sp|Q7VXM6|RUMA_BORPE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|33572444|emb|CAE42012.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382209|gb|AEE67056.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella pertussis
           CS]
          Length = 466

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 108/261 (41%), Gaps = 38/261 (14%)

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170
            D+ IV ++ H L         +R   A H  ++ +Q   +   T   L+R++ D     
Sbjct: 190 GDETIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYT 247

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLAR 229
           L   G  + YR  +  FTQ N  IN  M+   L       Q  + +L+CG GNF+L LA 
Sbjct: 248 LPEFGLRMPYRPTD--FTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLAT 305

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDI 287
                + VE +K   + A +  AA H                 +     F  L   ++D+
Sbjct: 306 QGREAVGVEGSKALTDRA-HEAAARH----------------GLGERTRFATLNLFEVDV 348

Query: 288 HSYR----FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--S 336
              R    F  + +DPPR G       +    P      I+Y+SC+P +L RD +I+   
Sbjct: 349 QWLRGLGYFDRMLIDPPREGAQAVAQALSLLAPGERPRRIVYVSCSPGTLARDAAIMVHE 408

Query: 337 TTHTIERLALFDQFPYTRHME 357
             + +    + + FP+T H+E
Sbjct: 409 GGYALRSAGVINMFPHTGHVE 429


>gi|172036253|ref|YP_001802754.1| putative 23S rRNA methyltransferase/RumA [Cyanothece sp. ATCC
           51142]
 gi|171697707|gb|ACB50688.1| putative 23S rRNA methyltransferase/RumA [Cyanothece sp. ATCC
           51142]
          Length = 455

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 20/157 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L++ YCG G F+L LA+   + + +E  K ++E  + N   N +NNVK  + + ++   
Sbjct: 311 NLVDAYCGVGTFTLPLAKKVAQAVGIESNKNAIEQGKNNADMNGINNVKFYQGTVEKILP 370

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
            +          D DI       I +DPPR G D   +  ++  + P I+YISC P +L 
Sbjct: 371 FLNL--------DPDI-------IVLDPPRKGCDRNVIHTLKEISPPIIIYISCQPSTLA 415

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           RDL  L     +T+E +   D FP T H+E  V L+R
Sbjct: 416 RDLEKLCQQDLYTLEWIQPIDFFPQTPHVE-SVALIR 451


>gi|328466504|gb|EGF37647.1| putative RNA methyltransferase [Listeria monocytogenes 1816]
          Length = 460

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 14/126 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   A
Sbjct: 310 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 370 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 417

Query: 331 DLSILS 336
           D+ IL+
Sbjct: 418 DMKILT 423


>gi|331662271|ref|ZP_08363194.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA143]
 gi|331060693|gb|EGI32657.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA143]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|238020378|ref|ZP_04600804.1| hypothetical protein GCWU000324_00258 [Kingella oralis ATCC 51147]
 gi|237867358|gb|EEP68364.1| hypothetical protein GCWU000324_00258 [Kingella oralis ATCC 51147]
          Length = 437

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG GNF+L LA+    V+ +E +    + A  N  AN + N +    +S +    
Sbjct: 294 IADLFCGLGNFTLPLAKRAAEVVGIEGSAALTQRAVANARANGLPNAQ---FASADL--- 347

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCR 330
                 F    +      RF  + +DPPR+G       +   Y P  I+YISCNP +L R
Sbjct: 348 ------FAATPETLAALGRFDKMLLDPPRAGAFAVVQALHAPYLPQRIVYISCNPATLAR 401

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHME 357
           D ++L S  +      + + FP T H+E
Sbjct: 402 DAAVLASKGYRFATAGMMNLFPQTSHVE 429


>gi|269928597|ref|YP_003320918.1| RNA methyltransferase, TrmA family [Sphaerobacter thermophilus DSM
           20745]
 gi|269787954|gb|ACZ40096.1| RNA methyltransferase, TrmA family [Sphaerobacter thermophilus DSM
           20745]
          Length = 400

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 20/155 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G F+++LA    RV+A+E +  +V  A+ N+    ++NV+ V          
Sbjct: 262 VVDAYAGVGTFAILLASEARRVIAIEESPSAVADAQPNLEG--ISNVEYV---------T 310

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPH-ILYISCNPDSLCR 330
            + ER   RL+       +   I +DPPR+G    A   +++ +P  ++Y+SC+P +L R
Sbjct: 311 GKVERVLPRLE------IQADAIILDPPRAGCHPRALEAVLEMHPQRLVYVSCDPSTLAR 364

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL IL    + +  +   D FP T H+EC   L R
Sbjct: 365 DLRILVDGGYRLLDVTPVDMFPQTYHIECVAALER 399


>gi|218688641|ref|YP_002396853.1| 23S rRNA methyluridine methyltransferase [Escherichia coli ED1a]
 gi|254766927|sp|B7MQW3|RUMB_ECO81 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|218426205|emb|CAR07029.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli ED1a]
 gi|315299392|gb|EFU58644.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           16-3]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|220905512|ref|YP_002480824.1| (Uracil-5)-methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869811|gb|ACL50146.1| (Uracil-5)-methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 550

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 7/148 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   L++A    R+L +E      +A    +A  +   +     S      A
Sbjct: 401 LLDLYCGVGAPGLLMADRCGRLLGLE-----QDAKAVALAQANAAAMGFTHCSYVAGDAA 455

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPH-ILYISCNPDSLCR 330
            R +R     ++    +  +  + VDPPR+GL   A   +++   H ILY+SCNP +L R
Sbjct: 456 QRLDRLAPAHENYWHPTETWDAVLVDPPRAGLAPRALNALLRLNAHTILYVSCNPATLAR 515

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           D + L   + +  +A  D FP+T H+EC
Sbjct: 516 DAARLRGAYRLVEMAAVDLFPHTPHVEC 543


>gi|74311403|ref|YP_309822.1| 23S rRNA methyluridine methyltransferase [Shigella sonnei Ss046]
 gi|123617630|sp|Q3Z3S5|RUMB_SHISS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|73854880|gb|AAZ87587.1| putative enzyme [Shigella sonnei Ss046]
 gi|323165792|gb|EFZ51578.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella sonnei 53G]
 gi|323172174|gb|EFZ57812.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           LT-68]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVMTLLVKQ 375


>gi|237730842|ref|ZP_04561323.1| 23S rRNA(M-5-U747)-methyltransferase [Citrobacter sp. 30_2]
 gi|226906381|gb|EEH92299.1| 23S rRNA(M-5-U747)-methyltransferase [Citrobacter sp. 30_2]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ +     + N+    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMKLTGIEIAPEAITCAKQSAQELGLQNLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                    + D+         + V+PPR G+       +   A  +I+Y SCN  ++ +
Sbjct: 297 Q------GEVPDL---------VLVNPPRRGIGKPLCDFLSRMAPRYIVYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LL R+
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLSRQ 375


>gi|319942368|ref|ZP_08016682.1| hypothetical protein HMPREF9464_01901 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804056|gb|EFW00964.1| hypothetical protein HMPREF9464_01901 [Sutterella wadsworthensis
           3_1_45B]
          Length = 496

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 84/210 (40%), Gaps = 28/210 (13%)

Query: 168 DERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  +  AGR+ I  ++          +F Q N    + + E  L A     GD +L+LYC
Sbjct: 289 DALVVWAGRSSIEAELMDLAFTVGPQTFLQVNTPQTLVLYEKALDAADVQSGDQILDLYC 348

Query: 219 GNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G G  +L  AR      R L VE  + S+  A  N A N +     V   ++ F  A   
Sbjct: 349 GVGTITLAAARRAGPHGRALGVERVEASIVCASENAARNSIPQAAFVAEPTETFLSAA-- 406

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-------GMVQAYPHILYISCNPDSL 328
                 LK+     ++   I VDP   G+             +      + Y+SCNP S 
Sbjct: 407 ------LKEGFPDGFKPTKIIVDPAYQGMAGGAAKALADLFSLPNGPKRLAYVSCNPKSF 460

Query: 329 CRDLSILSTTH-TIERLALFDQFPYTRHME 357
            RD   L+    T+E ++  D FP   H+E
Sbjct: 461 ARDAKELAVAGLTLESISPVDLFPGAMHLE 490


>gi|307155029|ref|YP_003890413.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7822]
 gi|306985257|gb|ADN17138.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7822]
          Length = 460

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 30/214 (14%)

Query: 166 YVDERLTVAGRTL---IYRQIE-----NSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           + ++  TVAGR     I+ ++E      +F Q N      +++ +    + +QG   L++
Sbjct: 258 FGEQTQTVAGRPYLREIFAELEFELRPETFFQVNTEAAEALIDVIFDKLE-LQGTETLVD 316

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G F+L LAR   +   +E+   S+  A+ N   N ++NV  +  + +        
Sbjct: 317 AYCGIGTFTLPLARRVKQAFGIELHSSSIIQAQKNAQINGLSNVSFMTGAVETL------ 370

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                 L  +D+       + +DPPR G     +  +     P I+YISC   +L RDL 
Sbjct: 371 ------LPLVDMTP---DLVLLDPPRKGCPPTVIDTLLKLKPPRIVYISCQVGTLARDLK 421

Query: 334 IL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            L    ++ +  +   D FP T H+EC   L ++
Sbjct: 422 QLCDKGSYHLTFVQPADFFPQTSHVECAAFLSQE 455


>gi|229918108|ref|YP_002886754.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
 gi|229469537|gb|ACQ71309.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
          Length = 458

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 18/182 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N      M   V+ A  G+ G+  +++ Y G G+  L LA +   +  +E+   +
Sbjct: 282 AFFQLNPAQTEKMYREVVEAA-GLTGEERVIDAYAGVGSIGLWLAPYAKEIRGMEVVPEA 340

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A  ++  N  N+V  V   ++ +            +KD     +    I VDPPR+G
Sbjct: 341 VEDANDHMRENGYNHVTYVEGRAEHWIPRW--------VKD----GWIPDVIVVDPPRTG 388

Query: 304 LDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           +D   +  +       I+Y+SCNP +L RD   ++   + +  +  +D FP T H+E  V
Sbjct: 389 MDHQLINSIISSKTKRIVYVSCNPQTLARDADQLMKAGYKVNYVQPYDMFPQTSHVESVV 448

Query: 361 LL 362
           + 
Sbjct: 449 VF 450


>gi|146085495|ref|XP_001465291.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134069388|emb|CAM67541.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 603

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 178 LIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           L +     +F Q N  G+   M++    A       LL+L  G G   L L++H  RV+ 
Sbjct: 370 LCFELSPTAFFQVNTPGMETMMMKVAEVAELSAGTTLLDLCSGTGTIGLTLSKHVKRVIG 429

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E+ + +V  AR N   N + N +      +    ++          DI         + 
Sbjct: 430 IELVESAVANARRNAQQNGITNTEFHCGRVEHLLPSVISGLPAEDRGDI--------VVI 481

Query: 297 VDPPRSGLDDATV----GMVQAYPHILYISCNPDSLCRDLSILSTTHT-------IERLA 345
           +DPPR+G++   +    GM +    ++YISC   +L RD   L+   T        E  A
Sbjct: 482 LDPPRAGVNSTVLRWIRGM-ETIRRVVYISCEQKALERDCPGLTKPSTKAYRGTPFEVTA 540

Query: 346 LF--DQFPYTRHMECGVLLVRKP 366
            F  D FP+T H+E   +L R+P
Sbjct: 541 AFAVDLFPHTHHVEMVAVLTRRP 563


>gi|260435757|ref|ZP_05789727.1| 23S rRNA (uracil-5-)-methyltransferase [Synechococcus sp. WH 8109]
 gi|260413631|gb|EEX06927.1| 23S rRNA (uracil-5-)-methyltransferase [Synechococcus sp. WH 8109]
          Length = 465

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 23/176 (13%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + +W+L    G +  +++ YCG G  +L L++    V  +E+   SVE AR N   N ++
Sbjct: 307 LTDWLLVQCAGAR--VVDAYCGVGTIALPLSKAGFNVQGLELNPDSVEQARLNAMHNGLS 364

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKD-IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAY 315
           +               R   +   + D +  H    + + +DPPR GLD   V  +++  
Sbjct: 365 S---------------RCAFDAGDVADLLAAHLDDCQALVLDPPRRGLDRCVVDSILERP 409

Query: 316 PHIL-YISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           P +L Y+SC+P +  RDL  L   S  + +E L   D FP T H+E   LL R  S
Sbjct: 410 PAVLAYLSCDPATQARDLKALLAPSGPYELEMLQPVDFFPQTTHLESLALLKRVSS 465


>gi|191166161|ref|ZP_03027995.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B7A]
 gi|209918108|ref|YP_002292192.1| 23S rRNA methyluridine methyltransferase [Escherichia coli SE11]
 gi|293433157|ref|ZP_06661585.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B088]
 gi|307311753|ref|ZP_07591393.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli W]
 gi|309795346|ref|ZP_07689764.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           145-7]
 gi|226725407|sp|B6I8H9|RUMB_ECOSE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|190903770|gb|EDV63485.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B7A]
 gi|209911367|dbj|BAG76441.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|291323976|gb|EFE63398.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B088]
 gi|306908308|gb|EFN38807.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli W]
 gi|308120996|gb|EFO58258.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           145-7]
 gi|315060144|gb|ADT74471.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli W]
 gi|323379298|gb|ADX51566.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli KO11]
 gi|324015943|gb|EGB85162.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           117-3]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DVRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|256021020|ref|ZP_05434885.1| 23S rRNA methyluridine methyltransferase [Shigella sp. D9]
 gi|332282247|ref|ZP_08394660.1| 23S rRNA methyluridine methyltransferase [Shigella sp. D9]
 gi|332104599|gb|EGJ07945.1| 23S rRNA methyluridine methyltransferase [Shigella sp. D9]
          Length = 375

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DVRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|157160381|ref|YP_001457699.1| 23S rRNA methyluridine methyltransferase [Escherichia coli HS]
 gi|170020738|ref|YP_001725692.1| 23S rRNA methyluridine methyltransferase [Escherichia coli ATCC
           8739]
 gi|300921111|ref|ZP_07137495.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           115-1]
 gi|312970983|ref|ZP_07785162.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           1827-70]
 gi|167012638|sp|A7ZYG2|RUMB_ECOHS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|189045734|sp|B1IWR3|RUMB_ECOLC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|157066061|gb|ABV05316.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli HS]
 gi|169755666|gb|ACA78365.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli ATCC
           8739]
 gi|300411962|gb|EFJ95272.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           115-1]
 gi|310336744|gb|EFQ01911.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           1827-70]
          Length = 375

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DVRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|322709830|gb|EFZ01405.1| tRNA (uracil-5-)-methyltransferase [Metarhizium anisopliae ARSEF
           23]
          Length = 574

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 23/162 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFT 270
           L++ Y G+G F++ L+  F     ++IA  S+ +AR N + N +  +  K +   + E  
Sbjct: 411 LIDAYSGSGLFTITLSSVFQHSTGIDIAADSIASARNNASLNGLGEDRCKFIAADAGELF 470

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
           +++              +      + +DPPR G D   +G ++ +    ILY+SCN  + 
Sbjct: 471 KSV-------------TYPADETVVVLDPPRKGCDADFLGQLRTFGPKRILYVSCNVHTQ 517

Query: 329 CRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +L         + IE L  FD FP T H+E   +L R
Sbjct: 518 ARDVGVLVRGEGDGARYDIESLVGFDFFPQTGHVEGVAILNR 559


>gi|194438371|ref|ZP_03070461.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           101-1]
 gi|253774111|ref|YP_003036942.1| 23S rRNA methyluridine methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160974|ref|YP_003044082.1| 23S rRNA methyluridine methyltransferase [Escherichia coli B str.
           REL606]
 gi|300929332|ref|ZP_07144805.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           187-1]
 gi|194422595|gb|EDX38592.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           101-1]
 gi|242376675|emb|CAQ31387.1| 23S rRNA m[5]U747 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253325155|gb|ACT29757.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972875|gb|ACT38546.1| 23S rRNA m(5)U747-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253977089|gb|ACT42759.1| 23S rRNA m(5)U747-methyltransferase [Escherichia coli BL21(DE3)]
 gi|300462678|gb|EFK26171.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           187-1]
 gi|323962972|gb|EGB58544.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H489]
          Length = 375

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DVRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|296129134|ref|YP_003636384.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas flavigena
           DSM 20109]
 gi|296020949|gb|ADG74185.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas flavigena
           DSM 20109]
          Length = 374

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 19/183 (10%)

Query: 186 SFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   +    LA A +       +LYCG G F+L LAR   +V+ VE +  +V
Sbjct: 208 SFFQTNTEVAAALYRQALAWADEAAVTSAWDLYCGVGGFALHLARAGRQVVGVEASAEAV 267

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A        +   + V   +  F            L   D+       + V+PPR GL
Sbjct: 268 VSAELTARDAGLPGTRFVAGDATAFA-----------LDATDVPDL----VVVNPPRRGL 312

Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            +     ++A   P +LY SC+  SL RDL+ + +   + R  + D FP+T H E   LL
Sbjct: 313 GEPLSRWLEASGVPRVLYSSCHAGSLARDLAHMPSLRLV-RAQVLDMFPHTAHHEVLTLL 371

Query: 363 VRK 365
            R 
Sbjct: 372 ERS 374


>gi|187730916|ref|YP_001880944.1| 23S rRNA methyluridine methyltransferase [Shigella boydii CDC
           3083-94]
 gi|226725415|sp|B2TUM0|RUMB_SHIB3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|187427908|gb|ACD07182.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella boydii CDC
           3083-94]
          Length = 375

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
               +E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVQEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L     IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-FRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|331682368|ref|ZP_08382987.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H299]
 gi|331079999|gb|EGI51178.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H299]
          Length = 375

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMVK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|317506803|ref|ZP_07964577.1| TRAM domain-containing protein [Segniliparus rugosus ATCC BAA-974]
 gi|316254877|gb|EFV14173.1| TRAM domain-containing protein [Segniliparus rugosus ATCC BAA-974]
          Length = 393

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 22/154 (14%)

Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LY G G F+ VLA+      RV  V+ A  S  AA  ++A   + +V+++  S+++   
Sbjct: 258 DLYGGAGLFASVLAQAVGPTGRVFTVDSAGASSRAAVESLA--DLRHVEVLSGSTEKI-- 313

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
                     L D+     R +   VDPPRSG   A V  +     I+++ C   +  RD
Sbjct: 314 ----------LPDLP----RAQVAVVDPPRSGAGRAVVAALAGTDRIIHVGCETAAFSRD 359

Query: 332 LSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + + +   +T+  + +FD FP T H+EC  LL R
Sbjct: 360 VGLYVEHGYTVREIRVFDAFPLTHHVECFALLER 393


>gi|300775961|ref|ZP_07085820.1| 23S rRNA (uracil-5-)-methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300505094|gb|EFK36233.1| 23S rRNA (uracil-5-)-methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 470

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 15/161 (9%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  + +LY G G  +  +AR+  +V+ +E  + +++AA  + A N + N        
Sbjct: 321 LKGDEVVYDLYTGTGTIAQYVARNAKQVIGIESVQEAIDAAIEHAALNGLTNTTFYCGDM 380

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCN 324
           K+          FN   +   +  +   +  DPPR G+    V  + +  P  ++Y+SCN
Sbjct: 381 KDI---------FN--DEFMANHPKADVLITDPPRDGMHQKVVEQILKLSPEKVVYVSCN 429

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +  RDL+++   +T+ ++   D FP T H+E   LLV+K
Sbjct: 430 SATQARDLALMKDHYTLVKILPVDMFPQTHHVENIALLVKK 470


>gi|300932464|ref|ZP_07147720.1| putative SAM-dependent methyltransferase [Corynebacterium resistens
           DSM 45100]
          Length = 447

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 25/226 (11%)

Query: 149 IQLIG--RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---L 203
           ++L G  R  KTK  +     D  +T A   L +     +F Q ++       +W+   +
Sbjct: 219 VELSGNRRHRKTKPLVG----DGTITQAHGPLTWELPAQAFWQGHSAAVGFYTQWISEKV 274

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR--YNIAANHV----- 256
            + KG      +LY G G+ S  L    DRV++V+IA  +  A    Y+ A  H      
Sbjct: 275 PSAKGKVTTGWDLYGGAGSLSAALVDKVDRVVSVDIASEATSAGSRAYSDAKIHSVEFWD 334

Query: 257 NNVKIV--RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +NV  V  R+++ E  ++ R    + R +D D    R   + +DPPR+G    T+  V  
Sbjct: 335 SNVDRVAERVAASE-KKSKRGAPTWWRERDAD---ERLHAVVLDPPRTGAGKHTIRAVAG 390

Query: 315 -YP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
             P H++++ C+P +  RD+   +   + I  +A+ D F  T H+E
Sbjct: 391 RRPRHVVHVGCDPAAAARDVRRWIDAGYAISAVAIVDAFGLTHHVE 436


>gi|261337560|ref|ZP_05965444.1| putative tRNA (Uracil-5-)-methyltransferase [Bifidobacterium
           gallicum DSM 20093]
 gi|270277973|gb|EFA23827.1| putative tRNA (Uracil-5-)-methyltransferase [Bifidobacterium
           gallicum DSM 20093]
          Length = 441

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 96/214 (44%), Gaps = 30/214 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGD----LLELYCGNGNF 223
           E + V GRT  +    N F Q +      + E VL   +  +QG     + +LY G+G F
Sbjct: 236 ETIDVQGRTFTFTVDANGFWQMHRMAPQRLPEHVLYLVRLALQGKTDPVIWDLYSGSGLF 295

Query: 224 SLVLAR----------HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +L LA              RVL+VE A  +V+ AR NI A  ++NV  +     +    +
Sbjct: 296 TLPLAALAGAVNGADGTGARVLSVEGAPQAVKNARLNIKAAGLSNVTALCGDVAKTLHHV 355

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
             E     L   D+       + +DPPR+G        + A     ++YI+C+P SL RD
Sbjct: 356 PAE-----LAHPDV-------VVLDPPRAGAKAQVCRQIAASGAQAVVYIACDPASLARD 403

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            + L+   + +  +  FD +P T H+E   LL R
Sbjct: 404 TATLTEEGYELRDIRAFDLYPMTHHVETVALLTR 437


>gi|118595122|ref|ZP_01552469.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium
           HTCC2181]
 gi|118440900|gb|EAV47527.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium
           HTCC2181]
          Length = 441

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 39/278 (14%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +R ++ QI+Y ++Q    +V  I      +A  E  I L      +K     I    +TK
Sbjct: 183 IRDQIPQIEYASNQERHILVLRIL-----EALSENDINLLKDFQEKKG----IEFWTQTK 233

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIE---------NSFTQPNAGINVHMLEWVLAATKGIQ 210
                + V   L+   ++++Y+  E          SFTQ N  IN  ++  V+       
Sbjct: 234 ---GYESVKPLLSSMQKSIVYKNKEFNLSFEFKPTSFTQINPFINAVLIRRVMNFLNPKP 290

Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +++ + +CG GNF+L +A +   V+  E  +  VE+A  N   N +  +        EF
Sbjct: 291 TEVIFDFFCGLGNFTLPIASYGSNVVGFESDEALVESANINAEKNKLQKL-------AEF 343

Query: 270 TQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQA-YPH-ILYISCNPD 326
            +      +  ++ D  I S  R     +DPPR G  +    + +   P+ I Y+SCNP 
Sbjct: 344 KRV-----DLFKVDDQAITSLGRASKWLIDPPRDGALNLINSISEENKPNLICYVSCNPA 398

Query: 327 SLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362
           +L RD  +L+    +   +  + + FP+T H+E   L 
Sbjct: 399 TLARDAHVLTNEKGYKFAKAGILNMFPHTSHVESIALF 436


>gi|293414137|ref|ZP_06656786.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B185]
 gi|291434195|gb|EFF07168.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B185]
          Length = 375

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKTLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + IER+ LFD FP+T H E   LLV+
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVK 374


>gi|225351373|ref|ZP_03742396.1| hypothetical protein BIFPSEUDO_02967 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157717|gb|EEG71000.1| hypothetical protein BIFPSEUDO_02967 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 421

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 96/209 (45%), Gaps = 26/209 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           E++ VAGR   Y      F Q     P A  N H+++ V     G +   L +LY G+G 
Sbjct: 224 EKVIVAGREFEYNVDAGGFWQMHRHAPIALTN-HVIDLVRGELDGAKSACLWDLYSGSGL 282

Query: 223 FSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+L LA       R+L+VE  K +V  A+ N+   H+ NV   R+     T A  R    
Sbjct: 283 FTLPLATLTAERTRMLSVEGGKTAVRNAQRNLRHIHLGNVD-ARVGDVAKTLANVR---- 337

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS- 336
           N L   D+       + +DPPR+G        +       ++YI+C+P SL RD + L  
Sbjct: 338 NDLAKPDV-------VVLDPPRAGARAKVCRQIAEAEAKSVVYIACDPASLARDTATLVL 390

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  +  FD +P T H+E  V L RK
Sbjct: 391 LGYELADIRAFDIYPMTHHVET-VALFRK 418


>gi|190150439|ref|YP_001968964.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307263783|ref|ZP_07545389.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915570|gb|ACE61822.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870904|gb|EFN02642.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 391

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+         ++ ++EI+  ++ +A  +     + N+    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTSIEISASAIASATKSAEQLQLKNITFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F               ++  S     + V+PPR G+       +     P+++Y SCN  
Sbjct: 307 FA--------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAR 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 353 TMAQDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|167719262|ref|ZP_02402498.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei DM98]
 gi|254179546|ref|ZP_04886145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1655]
 gi|184210086|gb|EDU07129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1655]
          Length = 465

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRMLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 396 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 456 VESIALFER 464


>gi|255027845|ref|ZP_05299831.1| hypothetical protein LmonocytFSL_18421 [Listeria monocytogenes FSL
           J2-003]
          Length = 319

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 14/126 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N       ++E   +
Sbjct: 194 VIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPS 253

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
             +      + D+         + VDPPR G D+  +  + A     ++Y+SCNP +L R
Sbjct: 254 WYKA---GIVADV---------LVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLAR 301

Query: 331 DLSILS 336
           D+ IL+
Sbjct: 302 DMKILT 307


>gi|237812554|ref|YP_002897005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei MSHR346]
 gi|237504204|gb|ACQ96522.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei MSHR346]
          Length = 485

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRMLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 367 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 415

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 416 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 475

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 476 VESIALFER 484


>gi|218704283|ref|YP_002411802.1| 23S rRNA methyluridine methyltransferase [Escherichia coli UMN026]
 gi|293404163|ref|ZP_06648157.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Escherichia coli
           FVEC1412]
 gi|298379946|ref|ZP_06989551.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300901222|ref|ZP_07119324.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           198-1]
 gi|226725406|sp|B7NAK5|RUMB_ECOLU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|218431380|emb|CAR12258.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli UMN026]
 gi|291428749|gb|EFF01774.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Escherichia coli
           FVEC1412]
 gi|298279644|gb|EFI21152.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300355347|gb|EFJ71217.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           198-1]
          Length = 375

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + IER+ LFD FP+T H E   LLV+
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVK 374


>gi|302525757|ref|ZP_07278099.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. AA4]
 gi|302434652|gb|EFL06468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. AA4]
          Length = 396

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 26/169 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHV 256
           EW  A + G+  DL   Y G G F+ VLA       +VLA+E  + +V     N+A    
Sbjct: 247 EWADAPSGGVAWDL---YAGVGLFASVLADQVGPDGQVLAIESGRRAVSDGERNLA---- 299

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                      +  Q   R      L  I         + +DPPR G   A V  + A  
Sbjct: 300 -----------DLPQVNWRSGRVEHL--IGDAPTPVDVVVLDPPRKGAGRAVVDAIAAGE 346

Query: 317 --HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
              I+Y++C+P +L RD+   S   +++  L  FD FP T H+EC  LL
Sbjct: 347 PDRIVYVACDPAALARDVQFFSEHGYSLTDLRAFDAFPMTHHVECVALL 395


>gi|71903755|ref|YP_280558.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|71802850|gb|AAX72203.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS6180]
          Length = 555

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 16/183 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A+    V  VE+ + +V
Sbjct: 291 SFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAV 350

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A++N A N + N   V  +++       ++              +   I VDPPR GL
Sbjct: 351 RDAQHNAALNGITNAYFVADTAEHAMATWAKD------------GIKPSVILVDPPRKGL 398

Query: 305 DDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
            ++ +   V   P  I Y+SCNP ++ RD+       + + ++   D FP T H+E   L
Sbjct: 399 TESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQPVDLFPQTHHVETVAL 458

Query: 362 LVR 364
           L +
Sbjct: 459 LSK 461


>gi|93005208|ref|YP_579645.1| 23S rRNA 5-methyluridine methyltransferase [Psychrobacter
           cryohalolentis K5]
 gi|122415956|sp|Q1QDU2|RUMA_PSYCK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|92392886|gb|ABE74161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter
           cryohalolentis K5]
          Length = 513

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 26/190 (13%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDR 233
           L +  I   FTQ N  +N  M +          G+ +L+L+ G GNFSL LAR       
Sbjct: 330 LTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGS 389

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE ++     A  N   N +NN +        ++Q +  +       D    +  F 
Sbjct: 390 VVGVEGSEAMTARAADNARRNGINNTEF-------YSQDLTHD-----CTDKPWANQGFD 437

Query: 294 TIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDL-SILSTTHTIERLALF 347
            + +DPPRSG  +    ++Q  P      I+Y+SCNP +L RD  ++L   + +    + 
Sbjct: 438 ALLIDPPRSGAWE----IMQYLPKFNAERIVYVSCNPATLARDTKALLEQGYRLTHAGVM 493

Query: 348 DQFPYTRHME 357
           D F +T H+E
Sbjct: 494 DMFCHTGHVE 503


>gi|328866133|gb|EGG14519.1| hypothetical protein DFA_12295 [Dictyostelium fasciculatum]
          Length = 728

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 30/200 (15%)

Query: 185 NSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           N+F Q N+         +LEW   A   +   LL++ CG G     ++ +   +  +E+A
Sbjct: 460 NAFFQVNSAATEKLYSKVLEWADCAKDTV---LLDVCCGTGTIGQCVSGNVRHIYGLELA 516

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM--RREREF-NRLKDIDIHSYRFKTIFV 297
             +V+ A  N   N++ NV  +   +++    +  R    F N +KD DI         V
Sbjct: 517 PDAVKDAIKNAQHNNITNVDYLVGKAEDTMSGLVSRIHNTFGNTVKDGDIIG------IV 570

Query: 298 DPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTTHT----------IERL 344
           DPPRSGL    +  +   +A   ++Y+SCN +SL +D + LS T T          ++ +
Sbjct: 571 DPPRSGLHLDVIKALRGFEAMKRLVYVSCNQNSLIQDAAKLSKTITNNMRGTPFRPVKAI 630

Query: 345 ALFDQFPYTRHMECGVLLVR 364
           A FD FP+T  +E  VL  R
Sbjct: 631 A-FDLFPHTELVEVVVLFER 649


>gi|269120866|ref|YP_003309043.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
           33386]
 gi|268614744|gb|ACZ09112.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
           33386]
          Length = 456

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G    +++++   V  +E+ + +VE A  N   N++ N K +  +   F +A
Sbjct: 312 IFDLFSGTGTIGQIVSKNARYVYGIELVEEAVEKANENAELNNIKNCKFI--AGDVFKKA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                    L++ DI   R   +  DPPR+G+    +  +  +    I+Y+SCNP +  +
Sbjct: 370 -------EELREADI---RPDIVIFDPPRAGVGQKALEKILEFDMNEIIYVSCNPKTFIQ 419

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           D+ IL  +   + +    D FP T H+E   LL +
Sbjct: 420 DVEILKKSGFELVKSVCVDMFPNTPHVEVVSLLEK 454


>gi|26246882|ref|NP_752922.1| 23S rRNA methyluridine methyltransferase [Escherichia coli CFT073]
 gi|227884177|ref|ZP_04001982.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 83972]
 gi|300993463|ref|ZP_07180405.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           45-1]
 gi|301051213|ref|ZP_07198042.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           185-1]
 gi|50401587|sp|Q8FJE7|RUMB_ECOL6 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|26107282|gb|AAN79465.1|AE016758_69 Hypothetical RNA methyltransferase ybjF [Escherichia coli CFT073]
 gi|227838929|gb|EEJ49395.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 83972]
 gi|300297120|gb|EFJ53505.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           185-1]
 gi|300406577|gb|EFJ90115.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           45-1]
 gi|307552702|gb|ADN45477.1| 23S rRNA uracil-5-methyltransferase [Escherichia coli ABU 83972]
 gi|315292534|gb|EFU51886.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           153-1]
          Length = 375

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVQQ 375


>gi|331651874|ref|ZP_08352893.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M718]
 gi|331050152|gb|EGI22210.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M718]
          Length = 375

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + IER+ LFD FP+T H E   LLV+
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVK 374


>gi|256832632|ref|YP_003161359.1| deoxyribonuclease/rho motif-related TRAM [Jonesia denitrificans DSM
           20603]
 gi|256686163|gb|ACV09056.1| deoxyribonuclease/rho motif-related TRAM [Jonesia denitrificans DSM
           20603]
          Length = 430

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 17/210 (8%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGD-LLELYCGNG 221
           R +V E +   GR   YR   N F Q +      ++  VL A   G +G  +L+ YCG+G
Sbjct: 229 RRFVTEIVHAYGRPYRYRVAANGFWQVHRDAPEVLVTAVLDALGDGFEGGRILDAYCGSG 288

Query: 222 NFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F++ LA        V+A+E    +V+ AR N+    +NN+         F Q    +  
Sbjct: 289 LFTVPLAAMAGEDGEVVAIEGDARAVKDARRNV----MNNLDPDIAQKVRFHQGSVGD-V 343

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS 336
              L+D+         + +DPPR G     +  +V   P  ++Y++C+P +L RD +++ 
Sbjct: 344 LAHLQDVP----SVDAVVLDPPRVGAGAHVIDALVALSPQTMVYVACDPAALARDTALVG 399

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365
              + +  +  FD FP T H+EC  +  R+
Sbjct: 400 ERGYQLTSMRAFDLFPMTHHVECVAVFHRR 429


>gi|225868865|ref|YP_002744813.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus]
 gi|225702141|emb|CAW99828.1| putative RNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 543

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  A  N A N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSFAKEVKAVYGVEVIEAAVRDAEKNAALNGITNAYYVADSAE----- 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                  N + +      +   I VDPPR GL ++ +    A     I YISCNP ++ R
Sbjct: 363 -------NAMANWCQEGIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+       + ++++   D FP T H+E   LL +
Sbjct: 416 DIKRYEELGYKLQKVQPVDLFPMTHHVETVTLLSK 450


>gi|259489663|tpe|CBF90119.1| TPA: tRNA methyltransferase (Eurofung) [Aspergillus nidulans FGSC
           A4]
          Length = 575

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGN 220
           +Y+D+ L    +   + Q  NS     +G   ++ E  L  T    G     LL+ Y G+
Sbjct: 377 EYIDDYL-FTNKAGAFFQNNNSIL---SGFTEYIREHALTPTSDKSGTPIKYLLDAYSGS 432

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G F++ L+  F   L V++A  S+ +AR N  AN++ N       +              
Sbjct: 433 GLFTITLSPLFKSSLGVDVAGDSIVSARENARANNLPNTGFAAADAAVL----------- 481

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL--- 335
             KD+     +   + +DPPR G  +  +  + AY    ++Y+SCN  +  RD++++   
Sbjct: 482 -FKDVPYPPDQ-TLLVIDPPRKGCSEDFLRQLLAYGPRRVVYVSCNVHTQARDVAVMVQG 539

Query: 336 ----STTHTIERLALFDQFPYTRHMECGVLLVRK 365
                  + IE +  FD FP T H+E GV ++ K
Sbjct: 540 DEKTGVRYNIESIRGFDFFPQTGHVE-GVAVLNK 572


>gi|332670648|ref|YP_004453656.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas fimi ATCC
           484]
 gi|332339686|gb|AEE46269.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas fimi ATCC
           484]
          Length = 429

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 17/219 (7%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           +GR    K    R  V E +     T  YR     F Q +      ++  VL A   + G
Sbjct: 222 LGRGRTDKRPNARTSVREEVRRGDVTYTYRVAAAGFWQVHREAPGLLVGAVLDALGDVDG 281

Query: 212 DL-LELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            + L+LY G G F+L LA       V++VE    +V  AR N+  +   NV++       
Sbjct: 282 AVVLDLYAGAGLFTLPLADAVGDGEVVSVEGDARAVRDARRNV--HDRPNVEL------- 332

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
              A    R     +D D        + +DPPR+G     V  V A     ++Y++C+P 
Sbjct: 333 --HAGDVARVLTGRQDADSDVVHADAVVLDPPRTGAGRRVVDAVAALRPERVVYVACDPA 390

Query: 327 SLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L RD+++L    + ++ +  +D FP+T H+E   +  R
Sbjct: 391 ALARDVALLGEAGYALDDVQGYDLFPHTHHLEAVAVFTR 429


>gi|46143326|ref|ZP_00135468.2| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208584|ref|YP_001053809.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|126097376|gb|ABN74204.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 391

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+         ++  +EI+  ++ +A  +     + N+    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F               ++  S     + V+PPR G+       +     P+++Y SCN  
Sbjct: 307 FA--------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAR 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 353 TMAQDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|326335854|ref|ZP_08202033.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325691998|gb|EGD33958.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 469

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 28/214 (13%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           D  Y  E +   GR  I+ ++E+        SF Q N+ +  + L  V      + G  L
Sbjct: 267 DTIYDQEVICYHGREFIHEEMEDLRFKINAKSFFQTNS-LQAYQLYKVTRDFAALTGKEL 325

Query: 215 --ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             +LY G G  +  +A+   +V+ VE    ++  A+ N   N + NV         F   
Sbjct: 326 VYDLYTGTGTIAQFIAKGAKKVIGVESVPEAIADAKENAHTNQIYNVDF-------FVGD 378

Query: 273 MRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328
           M+     EF     I  H      I  DPPR G+    +  +   A   ++Y+SCN  + 
Sbjct: 379 MKNIFNEEF-----ITKHGTP-DVIITDPPRDGMHKDVIAQILRIAPKRVVYVSCNSATQ 432

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            RDL+++   + + ++   D FP T H+E   LL
Sbjct: 433 ARDLALMDPMYKVVKIRPVDMFPQTYHIENVALL 466


>gi|126442107|ref|YP_001059230.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 668]
 gi|126221600|gb|ABN85106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 668]
          Length = 485

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 367 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 415

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 416 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 475

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 476 VESIALFER 484


>gi|242316213|ref|ZP_04815229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1106b]
 gi|242139452|gb|EES25854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1106b]
          Length = 485

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 367 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 415

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 416 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 475

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 476 VESIALFER 484


>gi|225870131|ref|YP_002746078.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047]
 gi|225699535|emb|CAW93112.1| putative RNA methyltransferase [Streptococcus equi subsp. equi
           4047]
          Length = 543

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  A  N A N + N   V  S++     
Sbjct: 308 VIDAYSGIGTIGLSFAKEVKAVYGVEVIEAAVRDAEKNAALNGITNAYYVADSAE----- 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                  N + +      +   I VDPPR GL ++ +    A     I YISCNP ++ R
Sbjct: 363 -------NAMANWCQEGIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+       + ++++   D FP T H+E   LL +
Sbjct: 416 DIKRYEELGYKLQKVQPVDLFPMTHHVETVALLSK 450


>gi|67639889|ref|ZP_00438718.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           GB8 horse 4]
 gi|254199956|ref|ZP_04906322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           FMH]
 gi|254206289|ref|ZP_04912641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           JHU]
 gi|76580093|gb|ABA49568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1710b]
 gi|147749552|gb|EDK56626.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           FMH]
 gi|147753732|gb|EDK60797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           JHU]
 gi|238520500|gb|EEP83959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           GB8 horse 4]
          Length = 434

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 256 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 315

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 316 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 364

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 365 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 424

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 425 VESIALFER 433


>gi|303250139|ref|ZP_07336341.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252750|ref|ZP_07534641.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651202|gb|EFL81356.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859782|gb|EFM91804.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 391

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+         ++  +EI+  ++ +A  +     + N+    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F               ++  S     + V+PPR G+       +     P+++Y SCN  
Sbjct: 307 FA--------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAR 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 353 TMAQDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|126455291|ref|YP_001066497.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|126228933|gb|ABN92473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1106a]
          Length = 465

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 396 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 456 VESIALFER 464


>gi|167902391|ref|ZP_02489596.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei NCTC 13177]
          Length = 465

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 396 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 456 VESIALFER 464


>gi|67515719|ref|XP_657745.1| hypothetical protein AN0141.2 [Aspergillus nidulans FGSC A4]
 gi|40746163|gb|EAA65319.1| hypothetical protein AN0141.2 [Aspergillus nidulans FGSC A4]
          Length = 529

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGN 220
           +Y+D+ L    +   + Q  NS     +G   ++ E  L  T    G     LL+ Y G+
Sbjct: 331 EYIDDYL-FTNKAGAFFQNNNSIL---SGFTEYIREHALTPTSDKSGTPIKYLLDAYSGS 386

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G F++ L+  F   L V++A  S+ +AR N  AN++ N       +              
Sbjct: 387 GLFTITLSPLFKSSLGVDVAGDSIVSARENARANNLPNTGFAAADAAVL----------- 435

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL--- 335
             KD+     +   + +DPPR G  +  +  + AY    ++Y+SCN  +  RD++++   
Sbjct: 436 -FKDVPYPPDQ-TLLVIDPPRKGCSEDFLRQLLAYGPRRVVYVSCNVHTQARDVAVMVQG 493

Query: 336 ----STTHTIERLALFDQFPYTRHMECGVLLVRK 365
                  + IE +  FD FP T H+E GV ++ K
Sbjct: 494 DEKTGVRYNIESIRGFDFFPQTGHVE-GVAVLNK 526


>gi|121599752|ref|YP_993159.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei
           SAVP1]
 gi|251767657|ref|ZP_02268038.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           PRL-20]
 gi|254197594|ref|ZP_04904016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei S13]
 gi|254261237|ref|ZP_04952291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1710a]
 gi|121228562|gb|ABM51080.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           SAVP1]
 gi|169654335|gb|EDS87028.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei S13]
 gi|243062065|gb|EES44251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           PRL-20]
 gi|254219926|gb|EET09310.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1710a]
          Length = 485

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 367 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 415

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 416 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 475

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 476 VESIALFER 484


>gi|261367469|ref|ZP_05980352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum
           variabile DSM 15176]
 gi|282570242|gb|EFB75777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum
           variabile DSM 15176]
          Length = 453

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 68/156 (43%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   L +     R+L VEI   +VE A+   A          R+        
Sbjct: 308 LLDLYCGMGTIGLSMLPDCRRLLGVEIVPQAVEGAKATAA----------RLGLSPQRAD 357

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHILY-ISCNPDSLCR 330
            R +        +         I VDPPR G D AT+  +VQ  P  L  +SCN  +  R
Sbjct: 358 FRCQDAGAAAAQLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAAR 417

Query: 331 DLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364
           D   L T H    + +   D FP TRH+EC V LV+
Sbjct: 418 DTRWL-TEHGYRAMEVQPVDLFPRTRHVECVVKLVQ 452


>gi|255722035|ref|XP_002545952.1| hypothetical protein CTRG_00733 [Candida tropicalis MYA-3404]
 gi|240136441|gb|EER35994.1| hypothetical protein CTRG_00733 [Candida tropicalis MYA-3404]
          Length = 551

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 21/189 (11%)

Query: 185 NSFTQPNAGINVHMLEWVL--AATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVE 238
           N F Q N  I  ++L+++      KG   D +++ YCG G F + L+  F    ++  +E
Sbjct: 362 NCFFQNNNSILPNVLDYITYHINLKGKPIDNIIDTYCGVGFFGIALSNSFQENTKIFGIE 421

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+  S++ A +N+  N++N  KI  +       +M +  EF +       S +   + +D
Sbjct: 422 ISNISIKYANHNVKINNLNKDKIKFIQGD--ASSMFKNEEFIKSG----ISGKNSVVIID 475

Query: 299 PPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-------STTHTIERLALFDQ 349
           P R G +++ +  +++  P  I+Y+SCN  +  RDL+         +  + +  +  FD 
Sbjct: 476 PSRKGSNESFMKQLLEFEPEIIIYVSCNVFTQARDLATFDKLQQNSNVKYKVRDIMGFDF 535

Query: 350 FPYTRHMEC 358
           FP T+H+E 
Sbjct: 536 FPQTKHVES 544


>gi|53719142|ref|YP_108128.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei K96243]
 gi|53723555|ref|YP_103010.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei
           ATCC 23344]
 gi|124385031|ref|YP_001026066.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei
           NCTC 10229]
 gi|126448076|ref|YP_001080666.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei
           NCTC 10247]
 gi|162210058|ref|YP_333755.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 1710b]
 gi|167738259|ref|ZP_02411033.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 14]
 gi|167815449|ref|ZP_02447129.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 91]
 gi|167845400|ref|ZP_02470908.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei B7210]
 gi|167910633|ref|ZP_02497724.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 112]
 gi|254178072|ref|ZP_04884727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           ATCC 10399]
 gi|254189063|ref|ZP_04895574.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254297423|ref|ZP_04964876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 406e]
 gi|254358296|ref|ZP_04974569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           2002721280]
 gi|90126210|sp|Q62JV9|RUMA_BURMA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|91207803|sp|Q3JRP8|RUMA_BURP1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|97273505|sp|Q63UT8|RUMA_BURPS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|52209556|emb|CAH35509.1| putative 23S rRNA (uracil-5-)-methyltransferase [Burkholderia
           pseudomallei K96243]
 gi|52426978|gb|AAU47571.1| ribosomal RNA large subunit (uracil-5-)-methyltransferase
           [Burkholderia mallei ATCC 23344]
 gi|124293051|gb|ABN02320.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           NCTC 10229]
 gi|126240946|gb|ABO04039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           NCTC 10247]
 gi|148027423|gb|EDK85444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           2002721280]
 gi|157807232|gb|EDO84402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 406e]
 gi|157936742|gb|EDO92412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160699111|gb|EDP89081.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           ATCC 10399]
          Length = 465

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 396 AVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 456 VESIALFER 464


>gi|170681470|ref|YP_001742967.1| 23S rRNA methyluridine methyltransferase [Escherichia coli SMS-3-5]
 gi|226725408|sp|B1LN12|RUMB_ECOSM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|170519188|gb|ACB17366.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           SMS-3-5]
          Length = 375

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 22/157 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDIQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDSL 328
                E                + V+PPR G    L D    M   +  I+Y SCN  ++
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGIPLCDYLSTMAPRF--IIYSSCNAQTM 339

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 340 AKDIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|317491408|ref|ZP_07949844.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920955|gb|EFV42278.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 377

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 18/157 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +L+CG G F L  A    ++  +EI+  ++  A  +     + NV+   + S  F 
Sbjct: 235 SSMWDLFCGVGGFGLHCATPEMKLTGIEISAEAIACATRSAQKIGLQNVQFSALDSTRFA 294

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
            A   E E   L            + V+PPR G+       +   A  +ILY SCN  ++
Sbjct: 295 SA---EGEVPEL------------VLVNPPRRGIGAELCEYLGKMAPDYILYSSCNAQTM 339

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +D++ L   + IE++ LFD FP+T H E   LLV +
Sbjct: 340 AQDIARLKN-YRIEQVQLFDMFPHTAHYEVLTLLVHQ 375


>gi|58259996|ref|XP_567408.1| tRNA methyltransferase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134116134|ref|XP_773238.1| hypothetical protein CNBJ0170 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255860|gb|EAL18591.1| hypothetical protein CNBJ0170 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229458|gb|AAW45891.1| tRNA methyltransferase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 613

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 105/268 (39%), Gaps = 50/268 (18%)

Query: 132 RECAIRLRDAL--------HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           +   I LRDAL            + +Q  G      +   +  V ER+       ++   
Sbjct: 354 KGATILLRDALLEPEPLPTAENPWNVQEAGEEEHVAVTDHKAQVYERVG----PWLFSFT 409

Query: 184 ENSFTQPNAGINVHMLEWVLAA--------TKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
             SF Q N  I + +  +V  A               L++ YCG+G F + L+  F  V 
Sbjct: 410 AGSFFQNNNSILIPLTTYVQEAIFAPNPNPNLPRPTHLVDTYCGSGLFGITLSPSFIAVA 469

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VEI+  S+EAA+ N   N + + K   +  K        E  F  L +    + R   +
Sbjct: 470 GVEISSLSIEAAKRNAEMNGLKD-KTTWLCGKA-------EDIFGGLAEQGF-AGRHSCV 520

Query: 296 FVDPPRSGLDDATVGMVQAY-P-HILYISCNPDSLCRDLSIL------------------ 335
            VDPPR G D   +  +  + P  I+Y+SCN  +  RD+  L                  
Sbjct: 521 VVDPPRKGCDTPFLDQLLNFRPLTIVYVSCNVHTQARDVGYLVHESNKRGQVSEGKEEGV 580

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLL 362
               +T+E L  FD FP T H+E   +L
Sbjct: 581 KGWKYTVESLRGFDLFPQTAHVESVAVL 608


>gi|156549461|ref|XP_001603783.1| PREDICTED: similar to ENSANGP00000011586 [Nasonia vitripennis]
          Length = 615

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 23/164 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL++ CG G   L  A+H D VL +E+   ++E A+ N   N V N +     +++    
Sbjct: 452 LLDVCCGTGTIGLSFAKHCDEVLGIEMTPSAIENAKVNAKENDVKNCEFFVGKAEDILLP 511

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHILYISCNPDSLC 329
           +      NR    +I         VDPPR+GL      ++   +    ++YISC+P +  
Sbjct: 512 V-----INRTTKPNI------VAIVDPPRAGLHQKALVSLRKAKKLKKLVYISCDPKAAI 560

Query: 330 RDLSILSTTHTIE---------RLALFDQFPYTRHMECGVLLVR 364
           R+L  L+  ++ +         +    D FP+T+H E  + L R
Sbjct: 561 RNLVDLARPNSKQYFGEPLVPVKAVPVDMFPHTKHCELVLYLER 604


>gi|290999475|ref|XP_002682305.1| S-adenosylmethionine-dependent methyltransferase [Naegleria
           gruberi]
 gi|284095932|gb|EFC49561.1| S-adenosylmethionine-dependent methyltransferase [Naegleria
           gruberi]
          Length = 580

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 27/200 (13%)

Query: 186 SFTQPNA-GINV---HMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVE 238
           SF Q N  G+ V    + EW L +          LL++  G G     +A    RV+ +E
Sbjct: 385 SFFQVNTKGVEVLYSKVKEWTLESMDKESNKERVLLDVCSGTGTIGSTMASSVSRVIGIE 444

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           + + SV  AR N   N++ N+  V   +++       E   N   +++          VD
Sbjct: 445 MVESSVNDARKNAQLNNIQNITFVCGKAEDTITTKMVEHNLNS-SNVEC------VAVVD 497

Query: 299 PPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRD-LSILSTTHTIE---------RLA 345
           PPRSGL    +  +   P I   +Y+SCNP +L  + + +   T T+          +  
Sbjct: 498 PPRSGLHKKVLESILRSPTIEKLIYVSCNPKTLVENAIRLCGPTSTVRASYGAFKPVKAI 557

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP+T H E   +  RK
Sbjct: 558 AVDMFPHTEHCEMICVFERK 577


>gi|217421778|ref|ZP_03453282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 576]
 gi|226197424|ref|ZP_03793001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei Pakistan 9]
 gi|217395520|gb|EEC35538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 576]
 gi|225930803|gb|EEH26813.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei Pakistan 9]
          Length = 485

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 367 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 415

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 416 AVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 475

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 476 VESIALFER 484


>gi|213962114|ref|ZP_03390378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga
           sputigena Capno]
 gi|213955120|gb|EEB66438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga
           sputigena Capno]
          Length = 470

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 26/204 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G   IY ++E         SF Q N+    H L  +      ++GD L  +LY G G  +
Sbjct: 277 GTDCIYEEMEGLRFKINAKSFYQTNSK-QAHKLYQITRDFADLKGDELVYDLYTGTGTIA 335

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             +AR   +V+ VE    ++  A+ N  AN + NV       K  F     +    N   
Sbjct: 336 QFVARKAKKVVGVEAVPEAIADAKANAKANGIENVSFYVGDMKNVFNDTFIKA---NGTP 392

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
           D+         I  DPPR G+    V  +   A P I+Y+SCN  +  RDL++L   + +
Sbjct: 393 DV---------IITDPPRDGMHKDVVEQILQIAPPKIVYVSCNSATQARDLALLDEMYKV 443

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
            ++   D FP T H+E  VLL ++
Sbjct: 444 TKVQPVDMFPQTYHVENVVLLEKR 467


>gi|322498729|emb|CBZ33802.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 603

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 23/203 (11%)

Query: 178 LIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           L +     +F Q N  G+   M++    A       LL+L  G G   L L++H  RV+ 
Sbjct: 370 LCFELSPTAFFQVNTPGMETMMMKVAEVAELSAGTTLLDLCSGTGTIGLTLSKHVKRVIG 429

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E+ + +V  AR N   N + N +      +    ++          DI         + 
Sbjct: 430 IELVESAVANARRNAQQNGITNAEFHCGRVEHLLPSVISGLPAEDRGDI--------VVI 481

Query: 297 VDPPRSGLDDATV----GMVQAYPHILYISCNPDSLCRDLSILSTTHT-------IERLA 345
           +DPPR+G++   +    GM +    ++YISC   +L RD   L+   T        E  A
Sbjct: 482 LDPPRAGVNSTVLRWIRGM-ETIRRVVYISCEQRALERDCPGLTKPSTKAYRGTPFEVTA 540

Query: 346 LF--DQFPYTRHMECGVLLVRKP 366
            F  D FP+T H+E   +L R+P
Sbjct: 541 AFAVDLFPHTHHVEMVAVLTRRP 563


>gi|229491254|ref|ZP_04385080.1| tram domain protein [Rhodococcus erythropolis SK121]
 gi|229321793|gb|EEN87588.1| tram domain protein [Rhodococcus erythropolis SK121]
          Length = 422

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 88/215 (40%), Gaps = 20/215 (9%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
           G   KT++ +  D V ER+      L       +     A  +  + EW  AAT     D
Sbjct: 225 GGPRKTRVAIGSDTVIERVGSREWALAATGFWQAHRGAAAAYSQVVGEWAGAATADTAWD 284

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L   Y G G F+ VLA        VE  + S  A     AA  ++++  VR  S      
Sbjct: 285 L---YGGVGVFAAVLAELVGPSGVVESVESSARAVADGQAA--LSDLGQVRFHSA----- 334

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
               R  N + D++        + +DPPR+G     V  + A     I++I C+P S  R
Sbjct: 335 ----RVENIIADLERSP---AVVVLDPPRAGAGRPVVEALAATGAERIVHIGCDPASFGR 387

Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ + L     I  L  FD FP T HMEC   L R
Sbjct: 388 DIGLYLEQGFRIGGLRAFDAFPQTHHMECIAFLER 422


>gi|149246690|ref|XP_001527770.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447724|gb|EDK42112.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 550

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 108/211 (51%), Gaps = 38/211 (18%)

Query: 182 QIENS-FTQPNAGINVHMLEWV-----LAATKGIQGDLLELYCGNGNFSLVLARHFD--R 233
           Q ENS F Q N  I   +L+++     L   K +  ++++ YCG G F + L++  D  +
Sbjct: 347 QFENSCFFQNNNSILSMVLDYMRFHINLLDNKVV--NIVDTYCGVGFFGIALSQLHDNVK 404

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVK---IVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           V  +E++  S++ A++N   N ++  K   I+  +SK F+      +EF   KD D + +
Sbjct: 405 VFGIEVSDSSIKYAQHNAKLNGLDQEKVKFILGDASKIFSN-----KEF---KD-DNNRF 455

Query: 291 RFK----TIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL--------- 335
           + K     + +DP R G D+  +  +++  P  I+Y+SCN  +  RDL++          
Sbjct: 456 KIKGDDSVVIIDPSRKGSDEQFLRQLLEFEPRMIIYVSCNVFTQARDLALFEKLQLQLHQ 515

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRK 365
               + +E++  FD FP T+H+E   +L +K
Sbjct: 516 NKKLYNVEQVTGFDFFPQTKHVESIAVLKKK 546


>gi|291528120|emb|CBK93706.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale M104/1]
          Length = 468

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 30/238 (12%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           R +  LH +   +  + +   T +     Y  E L      L ++    SF Q N+ +  
Sbjct: 248 RFKGVLHTQNDSVADVVKNEGTDVLYGDSYFYEELL----GLKFKITPFSFFQTNS-LGA 302

Query: 197 HML-----EWVLAATK-GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            +L     E++L   K  + G  + +LY G G  + ++A     V+ VEI + +V AA+ 
Sbjct: 303 EVLYETAREFILGDDKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKE 362

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N A N ++N K +                 + LK +D    +   I +DPPR G+    +
Sbjct: 363 NAALNGLDNCKFIAG---------------DVLKVLDEIEEKPDYIILDPPRDGIHPKAI 407

Query: 310 GMVQAY--PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           G +  Y   +++YISC P SL RDL I ++  + +E++   D FP T H+E  V L R
Sbjct: 408 GKIIEYGVENMVYISCKPTSLARDLQIFMARGYRVEKICCVDMFPNTYHIETIVALHR 465


>gi|254776021|ref|ZP_05217537.1| RNA methyltransferase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 395

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 37/191 (19%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLA 236
           YR +   + QP AG    M  W             +LY G G F+  L        RVL+
Sbjct: 236 YRALVLDWAQPGAG----MTAW-------------DLYGGAGVFAAALGEAVGASGRVLS 278

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           V+ ++ S  AAR  +A   +  V++V       T ++RR     R       + +     
Sbjct: 279 VDTSRASTRAARAALA--DLPQVQVV-------TDSVRRALAAQRTP-----ALKADVAV 324

Query: 297 VDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYT 353
           +DPPR+G     +  + A   P I++I C   S  RD+ I L   +T+E++ +FD FP T
Sbjct: 325 LDPPRAGAGREVIDSLSAAGVPRIVHIGCEAASFARDMGIYLGHGYTVEKIRVFDAFPLT 384

Query: 354 RHMECGVLLVR 364
            H EC  LL R
Sbjct: 385 HHSECVALLTR 395


>gi|325963014|ref|YP_004240920.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469101|gb|ADX72786.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 458

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 98/231 (42%), Gaps = 48/231 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL GR    +     DY   R+T AG   I+R    +               V A T+ +
Sbjct: 262 QLRGRTWVQETAAGHDY---RVTGAGFWQIHRDAPEAL--------------VGAVTQFL 304

Query: 210 QGD--------LLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           QG         + +LY G G F+ VLA        VL+VE A  +   AR N+ A     
Sbjct: 305 QGGGYLHPGAVVADLYAGAGLFTAVLADAVGETGSVLSVEGAAGTSRDARKNLHA--APQ 362

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH 317
           V+IV+       + + R++  N           F  + +DPPR+G   A V  ++ A+P 
Sbjct: 363 VEIVQGR----VERVLRQKPRN-----------FDALILDPPRAGAGKAVVNQLLAAHPR 407

Query: 318 -ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
            I Y+SC+P S  RD+         +  L   D +P+T H+E   LL  +P
Sbjct: 408 AIAYVSCDPASFARDVGYFRQAGWELSGLRALDLYPHTHHLETVALLAPRP 458


>gi|134277323|ref|ZP_01764038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 305]
 gi|134250973|gb|EBA51052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 305]
          Length = 485

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 307 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 366

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+           F       R    +   D+ +   F    VDPPR G 
Sbjct: 367 RALENAKENGVDG-------HTSFAC-----RNLFEVTSDDLRALGAFDKFLVDPPREGA 414

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T 
Sbjct: 415 LAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTS 474

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 475 HVESIALFER 484


>gi|331646127|ref|ZP_08347230.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M605]
 gi|330910641|gb|EGH39151.1| 23S rRNA (Uracil-5-) -methyltransferase rumB [Escherichia coli
           AA86]
 gi|331044879|gb|EGI17006.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M605]
          Length = 375

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L     IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|167893942|ref|ZP_02481344.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 7894]
 gi|167918662|ref|ZP_02505753.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei BCC215]
          Length = 465

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 347 RALENAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 395

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T H
Sbjct: 396 AVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSH 455

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 456 VESIALFER 464


>gi|307246027|ref|ZP_07528109.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255009|ref|ZP_07536827.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259445|ref|ZP_07541170.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852962|gb|EFM85185.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306861882|gb|EFM93858.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866381|gb|EFM98244.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 391

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+         ++  +EI+  ++ +A  +     + N+    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F               ++  S     + V+PPR G+       +     P+++Y SCN  
Sbjct: 307 FA--------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAR 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 353 TMAQDFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|82543347|ref|YP_407294.1| 23S rRNA methyluridine methyltransferase [Shigella boydii Sb227]
 gi|123560143|sp|Q323P2|RUMB_SHIBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|81244758|gb|ABB65466.1| putative enzyme [Shigella boydii Sb227]
 gi|320183201|gb|EFW58059.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri CDC
           796-83]
 gi|332097262|gb|EGJ02245.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella boydii
           3594-74]
          Length = 375

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L     IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|261401379|ref|ZP_05987504.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria lactamica
           ATCC 23970]
 gi|269208586|gb|EEZ75041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria lactamica
           ATCC 23970]
          Length = 443

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 32/189 (16%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ N   N  M+   +      QG+ + +L+CG GNFSL + +    V+ +E A+  
Sbjct: 265 GDFTQINTDTNRLMVSRAVKMLDIRQGERIADLFCGLGNFSLPMVKSGADVVGIEGAENL 324

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A  N   N  +          +F  A      F+  +       RF  + +DPPRSG
Sbjct: 325 VRRAWQNARLNGCDG-------QTDFIAA----NLFDCTEKTVASWGRFDKMLIDPPRSG 373

Query: 304 LDDATVGMVQAY-PH-ILYISCNPDSLCRDLSIL-----------------STTHTIERL 344
             +    +   Y P  I+Y+SCNP +L RD  +L                  T+HT E +
Sbjct: 374 AYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSGAGIMNMFAQTSHT-ESV 432

Query: 345 ALFDQFPYT 353
           A+FD  P T
Sbjct: 433 AVFDLLPQT 441


>gi|332881940|ref|ZP_08449582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332680175|gb|EGJ53130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 467

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 94/204 (46%), Gaps = 26/204 (12%)

Query: 175 GRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGDLL--ELYCGNGNFS 224
           G+  IY ++E         SF Q N+     + E V      ++GD L  +LY G G  +
Sbjct: 277 GQDCIYEEMEGLRFKINAKSFYQTNSKQAQRLYE-VARDFADLKGDELVYDLYTGTGTIA 335

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLK 283
             +A+   RV+ VE    ++  A+ N AAN ++NV       K  F +A       N + 
Sbjct: 336 QFVAKRAKRVVGVEAVPEAIADAKANAAANGIDNVSFYVGDMKNVFNEAFIAA---NGVP 392

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
           D+         I  DPPR G+    V  +   A   ++Y+SCN  +  RDL+++   + +
Sbjct: 393 DV---------IITDPPRDGMHKDVVAQILHIAPAKVVYVSCNSATQARDLALMDEQYKV 443

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
            ++   D FP T H+E  VLL ++
Sbjct: 444 TKVQPVDMFPQTYHVENVVLLEKR 467


>gi|149758689|ref|XP_001488208.1| PREDICTED: similar to HpaII tiny fragments locus 9C [Equus
           caballus]
          Length = 633

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 23/164 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ +E+ + +VE AR N   N ++NV+     +++    
Sbjct: 444 VLDVCCGTGTIGLALARKVKRVVGIELCQEAVEDARVNARDNELSNVEFHCGRAEDLVPT 503

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    +  V+   +   +LY+SCNP +  
Sbjct: 504 L-----VSRLASQQL------VAVLDPPRAGLHSKVILAVRKAENLKRLLYVSCNPRAAM 552

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T     +    D FP T H E  +L  R
Sbjct: 553 SNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTSHCEMLILFER 596


>gi|78212870|ref|YP_381649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CC9605]
 gi|78197329|gb|ABB35094.1| RNA methyltransferase, TrmA family [Synechococcus sp. CC9605]
          Length = 465

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 23/176 (13%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + +W+L    G    +++ YCG G  +L LA+    V  +E+   SVE AR N   N ++
Sbjct: 307 LTDWLLNQCAGAL--VVDAYCGVGTIALPLAKAGFDVQGLELNPDSVEQARLNAMHNGLS 364

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDI-DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           +               R       + D+   H    + + +DPPR GLD   V  +   P
Sbjct: 365 S---------------RCAFHAGDVADLLAAHLDDCQALVLDPPRRGLDRRVVDSILEQP 409

Query: 317 H--ILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              ++Y+SC+P +  RDL  L   S ++ +E L   D FP T H+E   LL R  S
Sbjct: 410 PVVVVYLSCDPATQARDLKALLAPSGSYELEVLQPVDFFPQTTHLESLALLKRVSS 465


>gi|298294381|ref|YP_003696320.1| (uracil-5)-methyltransferase [Starkeya novella DSM 506]
 gi|296930892|gb|ADH91701.1| (Uracil-5)-methyltransferase [Starkeya novella DSM 506]
          Length = 426

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 18/176 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SF Q  A     +   V+ AT+   G + +L+ G G F L LA    RV A E + P+V
Sbjct: 259 GSFLQATAAGEATLASLVMEATE-KAGRIADLFSGVGTFGLRLAER-ARVAAYESSAPAV 316

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           EA     A   V+ +K V   +          R+  R   + +    F  +  DPPR G 
Sbjct: 317 EA--LVKATRGVSGLKPVTAEA----------RDLFRRPLLPLELKAFDAVVFDPPRQGA 364

Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           + A V  + A   P ++ +SC+P +  RD  IL    + +ER+   DQF Y+ H+E
Sbjct: 365 E-AQVRQLAASKVPLVVGVSCDPVTFARDAQILVEGGYRLERVTPVDQFLYSAHVE 419


>gi|171463398|ref|YP_001797511.1| RNA methyltransferase, TrmA family [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192936|gb|ACB43897.1| RNA methyltransferase, TrmA family [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 475

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 21/162 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+L+CG GNF+L LAR   +VL +E  +     A+ N   N +++ K   M S  F   
Sbjct: 324 VLDLFCGIGNFTLPLARKAKQVLGIEGLESLTARAKSNAQHNGLSD-KASFMQSDLFEVT 382

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--------PHILYISCN 324
                 +         + R+    +DPPR G  D    + + +          I+Y+SCN
Sbjct: 383 SETVASWG-------GAERW---LMDPPRKGAMDICKALAELHLQQSDLLPERIVYVSCN 432

Query: 325 PDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVR 364
           P +L RD+ IL     + +    + + FP+T H+E  V+  R
Sbjct: 433 PKTLARDVEILCHQAGYRLSSAGIINMFPHTSHVESMVVFDR 474


>gi|291296019|ref|YP_003507417.1| (Uracil-5)-methyltransferase [Meiothermus ruber DSM 1279]
 gi|290470978|gb|ADD28397.1| (Uracil-5)-methyltransferase [Meiothermus ruber DSM 1279]
          Length = 412

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 20/152 (13%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +ELY G+G  SL LA  F  V+A+EI   +V+    +     V N+  VR  +       
Sbjct: 276 VELYAGSGVLSLHLAHRFTEVVAIEINPSAVKRGEADRDRLGVQNLVFVRDDA------- 328

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRD 331
              R   R    D+       + VDPPR+GL  +   G+++  P  ILYI+C+P +  RD
Sbjct: 329 ---RVLGRHLPADL-------VMVDPPRAGLAPEVLAGLLEKKPRQILYIACDPATWARD 378

Query: 332 LSILSTTHTIERLA-LFDQFPYTRHMECGVLL 362
           +  L       R A  +D +P+T H+E   LL
Sbjct: 379 IGRLVQGGYRLRFARPYDFYPFTHHVEVLSLL 410


>gi|293409234|ref|ZP_06652810.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B354]
 gi|291469702|gb|EFF12186.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B354]
          Length = 375

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A  + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACANQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|54025714|ref|YP_119956.1| putative RNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54017222|dbj|BAD58592.1| putative ribosomal RNA large subunit methyltransferase [Nocardia
           farcinica IFM 10152]
          Length = 430

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 67/158 (42%), Gaps = 25/158 (15%)

Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LY G G F+  LA        VLAVE A+P+V   R  +               ++   
Sbjct: 290 DLYSGAGVFAARLAEQAGPDGAVLAVESARPAVADGRAAL---------------RDLPW 334

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
              R     R       +   + + +DPPR+G     V  V A     I++I C+P S  
Sbjct: 335 VDLRAARVERWAGEHARTAPPRVVVLDPPRAGAGKEVVAAVTAAGPERIVHIGCDPASFA 394

Query: 330 RDLSILSTTHTIERLA---LFDQFPYTRHMECGVLLVR 364
           RD+ +    H   RLA   +FD FP T HMEC  LL R
Sbjct: 395 RDIGLYH--HGGYRLAGLRVFDAFPGTHHMECVALLTR 430


>gi|320175299|gb|EFW50405.1| 23S rRNA methyluridine methyltransferase [Shigella dysenteriae CDC
           74-1112]
          Length = 375

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L     IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|121713680|ref|XP_001274451.1| tRNA(m5U54)methyltransferase [Aspergillus clavatus NRRL 1]
 gi|119402604|gb|EAW13025.1| tRNA(m5U54)methyltransferase [Aspergillus clavatus NRRL 1]
          Length = 579

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 28/204 (13%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGD------LLELYCGNGNFSLVLARH 230
           I+     +F Q N  I     +++  LA  K  + D      LL+ Y G+G F++ L+  
Sbjct: 386 IFTNKAGAFFQNNNSILSGFTDYIRQLALPKDNEKDAKPIKYLLDAYSGSGLFTITLSPL 445

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           F   L V++A  S+ +AR N  AN + N       +                KD+  +  
Sbjct: 446 FKSSLGVDVAGDSIISARENARANALPNTGFAAADAAVL------------FKDVP-YPP 492

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-----STTHTIER 343
               + +DPPR G  D  +  + +Y    ++Y+SCN  +  RD++++     +  + IE 
Sbjct: 493 EQTLLVIDPPRKGCSDDFLRQLLSYGPRRVVYVSCNVHTQARDVAVMVQGDANCRYEIES 552

Query: 344 LALFDQFPYTRHMECGVLLVRKPS 367
           +  FD FP T H+E   +L + P+
Sbjct: 553 IRGFDFFPQTGHVEGVAILNKVPA 576


>gi|294155861|ref|YP_003560245.1| hypothetical RNA methyltransferase [Mycoplasma crocodyli MP145]
 gi|291600330|gb|ADE19826.1| hypothetical RNA methyltransferase [Mycoplasma crocodyli MP145]
          Length = 435

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 79/149 (53%), Gaps = 16/149 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +++ELYCG G+  ++L+    +++ +EI++ S++ A  N   N++ N    +  +     
Sbjct: 290 EIIELYCGVGSLGMLLSNKEQKLIGIEISESSIKNANQNKEINNLKNTTYYQGDA----- 344

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329
                  F+ +K ++++  +   I +DPPR+GLD   +  +      ++LYISC+  ++ 
Sbjct: 345 -------FDIIKKVNVN-LKNNLIILDPPRAGLDKKLINFLAQNEAENVLYISCDLGTMI 396

Query: 330 RDLSILST-THTIERLALFDQFPYTRHME 357
           RD+ + +   + +  +  +D F  T H+E
Sbjct: 397 RDIKLFNELGYELLFIKGYDVFRNTSHIE 425


>gi|311106590|ref|YP_003979443.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310761279|gb|ADP16728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Achromobacter
           xylosoxidans A8]
          Length = 497

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 50/239 (20%)

Query: 144 ARKYQIQ--LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE---------NSFTQPNA 192
           A K+ +Q  L  +  +T   L+R++        G TL Y   E           FTQ N 
Sbjct: 216 AAKHNVQWWLQSKGPETVHPLEREH--------GETLAYTMPEFGLRMPYRPTDFTQVNH 267

Query: 193 GINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            IN  M+   L   +    D + +L+CG GNF+L LA      + VE +K   + A ++ 
Sbjct: 268 AINRAMVSRALKLLEVQTTDRVADLFCGLGNFTLPLATQGKEAVGVEGSKALTDRA-FDA 326

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYR----FKTIFVDPPRSGLD 305
           A+ H                 +     F  L   ++D+   R    F  + +DPPR G  
Sbjct: 327 ASRH----------------GLGDRTSFATLNLFEVDVEWLRGLGYFDRMLIDPPREGAH 370

Query: 306 DATVGMVQAYPH-----ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
                +     H     I+Y+SCNP +L RD +I+     + ++   + + FP+T H+E
Sbjct: 371 AVAQALSLLEAHERPVRIVYVSCNPATLARDAAIMVHEGGYVLKSAGVINMFPHTGHVE 429


>gi|148652196|ref|YP_001279289.1| 23S rRNA 5-methyluridine methyltransferase [Psychrobacter sp.
           PRwf-1]
 gi|148571280|gb|ABQ93339.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter sp.
           PRwf-1]
          Length = 516

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 107/240 (44%), Gaps = 32/240 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKT--KICL-DRDYVDERLTVAGR--------TLIYRQIEN 185
           +L+    AR +Q+ L  +  ++  +I L D D V E+    GR         L Y  I  
Sbjct: 279 QLKAFFKARNWQLYLQSKGPESIERIALHDTDDVSEQF---GRLYYQLPEFNLTYEFIPT 335

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            FTQ N  +N  M +          G+ +L+L+ G GNFSL LAR        +     V
Sbjct: 336 DFTQVNLSVNRKMTKLACDLLDLKPGERVLDLFSGLGNFSLPLARLVGGEDGSQGLAIGV 395

Query: 245 EAARYNIAANHVNNVKIVRMSSKEF-TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           E +   + A   +N K   +S+ EF  Q + ++       +       F  I +DPPRSG
Sbjct: 396 EGSDA-MTARAADNAKRNGISNTEFYNQDLTQD-----FSEQPWAQQGFDAILIDPPRSG 449

Query: 304 LDDATVGMVQAYPH-----ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
             +    ++Q  P      I+Y+SCNP +L RD  ++L   + +    + D F +T H+E
Sbjct: 450 AWE----VMQYLPRFNASRIVYVSCNPATLARDTKALLEQGYRLTDAGVMDMFCHTGHVE 505


>gi|332140216|ref|YP_004425954.1| RNA methyltransferase, TrmA family protein [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550238|gb|AEA96956.1| RNA methyltransferase, TrmA family protein [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 482

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 19/186 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N F Q N  +N  M+   L        + + + + G GNF+L +A+    V A+E     
Sbjct: 309 NDFIQINKVVNEKMINQALVWLDPRPNERIADWFSGLGNFTLPIAKKGALVQAIEGVAEM 368

Query: 244 VEAARYNIAANHVNNVKIVRM--SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           V  A+ N     + NV+ + +  ++K   +A  ++               F  + +DP R
Sbjct: 369 VLRAKDNAQQQGIENVEWLHLDLANKANVEASLQQG--------------FDKVLLDPSR 414

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
            G       +V+A P  I+Y+SCNP +  RD  +L +  + +E+  + + FP+T HME  
Sbjct: 415 EGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLINGGYEMEKAGVAEMFPFTHHMEMM 474

Query: 360 VLLVRK 365
            L  ++
Sbjct: 475 ALFTQR 480


>gi|149003890|ref|ZP_01828713.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|237650085|ref|ZP_04524337.1| RNA methyltransferase [Streptococcus pneumoniae CCRI 1974]
 gi|237822146|ref|ZP_04597991.1| RNA methyltransferase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758120|gb|EDK65124.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 541

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  +++   + 
Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 368 WLKE------------GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|71894135|ref|YP_278243.1| putative tRNA (Uracil-5-) -methyltransferase [Mycoplasma synoviae
           53]
          Length = 433

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 29/206 (14%)

Query: 175 GRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV 226
           G+T +       +  + +SF Q N  +  ++ + +      +    L++ YCG G  ++ 
Sbjct: 241 GKTFVQRIGVNKFNVLNDSFFQVNGPVAKYLFDDLAELISKVNSKSLIDFYCGVGAITIY 300

Query: 227 LARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           LA  F  +     E  + +++ A  N+  N +N  KI  +             +F+  K 
Sbjct: 301 LATKFPELDFYGYEKNRFAIKIANENVLINKLNPEKIKFL-------------KFDLDKK 347

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILS--TTH 339
           ++   ++   IF DPPR+GL      +V   +   +I YISCNP +L RD+  ++  +  
Sbjct: 348 LNDKVFQDSVIF-DPPRAGLSQNLKLLVLNSENVKNIFYISCNPRTLVRDVKEITEKSNF 406

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            I+ +  +D FP T H+E  V L R+
Sbjct: 407 KIKFIKGYDMFPQTHHIETLVWLSRE 432


>gi|319639269|ref|ZP_07994020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa C102]
 gi|317399453|gb|EFV80123.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa C102]
          Length = 441

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 23/179 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ NA +N  M+   +      +G+ + +L+CG GNFSL LA+    V+ +E A   V+
Sbjct: 271 FTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGADYLVD 330

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID---IHSY-RFKTIFVDPPR 301
            AR N   N           +  F+ A         L D D   + S+ +F  + +DPPR
Sbjct: 331 RARENARLNRC-------AENMTFSVA--------DLFDTDEKTVESWGKFDKMLLDPPR 375

Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           SG       + + +    I+Y+SCNP +  RD  +L    +  +   + + F  T H+E
Sbjct: 376 SGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMNMFAQTSHVE 434


>gi|242221160|ref|XP_002476334.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724415|gb|EED78459.1| predicted protein [Postia placenta Mad-698-R]
          Length = 445

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 32/230 (13%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-----TK 207
           G   +  +C+       R  V   T  Y  I  SF Q N  + + +  +V  A       
Sbjct: 228 GHTLEKHVCVTDHKATVRERVGDNTFEY--IAGSFFQNNNSVLLPLTSYVRDAIFAHHPS 285

Query: 208 GIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           G         L++ YCG+G F++ LAR F +V  +E+++ S+  A  N   N +   +  
Sbjct: 286 GPTAPPRPTHLVDAYCGSGLFAITLARSFQKVAGIELSEDSIRCATRNAQLNDIPPDQCS 345

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILY 320
            MS  +        ++F R + +         + +DPPR G D   +  +  +    ++Y
Sbjct: 346 FMSG-DAANIFATVQDFPRDQTV---------LIIDPPRKGTDAKFIDQLLEFQGALVVY 395

Query: 321 ISCNPDSLCRDL-SILSTT-------HTIERLALFDQFPYTRHMECGVLL 362
           +SCN  +  RD+ +IL  +       + +E L  FD FP T H+E   +L
Sbjct: 396 VSCNVHTQARDVGTILRKSEARGGRRYVMESLVGFDLFPQTAHVESVAVL 445


>gi|148988481|ref|ZP_01819928.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147926162|gb|EDK77236.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP6-BS73]
          Length = 543

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  +++   + 
Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 368 WLKE------------GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|322491461|emb|CBZ26733.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 604

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 20/166 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+L  G G   L L++H  RV+ +E+ + +V  AR N   N + N +      +    +
Sbjct: 406 LLDLCSGTGTIGLTLSKHVKRVIGIELVESAVANARRNAQQNSITNAEFHCGRVEHLLPS 465

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLC 329
           +          DI         + +DPPR+G++   +  ++    I   +YISC   +L 
Sbjct: 466 VISGLPAEDRGDI--------VVVLDPPRAGVNSTVLKWIRGMETIRRVVYISCEQKALE 517

Query: 330 RDLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVRKP 366
           RD   L+   T         +     FD FP+T H+E   +L R+P
Sbjct: 518 RDCPGLTKPSTKAYRGTPFEVTAGFAFDLFPHTHHVEMVAVLTRRP 563


>gi|168491923|ref|ZP_02716066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC0288-04]
 gi|221231781|ref|YP_002510933.1| RNA methyltransferase [Streptococcus pneumoniae ATCC 700669]
 gi|183573799|gb|EDT94327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC0288-04]
 gi|220674241|emb|CAR68776.1| putative RNA methyltransferase [Streptococcus pneumoniae ATCC
           700669]
          Length = 543

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  +++   + 
Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 368 WLKE------------GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|153792070|ref|NP_001093345.1| TRM2 tRNA methyltransferase 2 homolog A [Xenopus laevis]
 gi|148745595|gb|AAI42551.1| LOC100101284 protein [Xenopus laevis]
          Length = 612

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 29/167 (17%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   + LA+   +V+ +E+ + ++  A+ N   N+++NV        EF + 
Sbjct: 440 VLDVCCGTGTIGISLAKKVKKVVGIELCQEAIADAKANAQLNNLDNV--------EF-RC 490

Query: 273 MRREREFNRLKDIDIHSYRFKT--IFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS 327
            + E  F  L    I+SY F +    VDPPR+GL    +  ++   H   ++Y+SCNP +
Sbjct: 491 GKAEDIFPTL----INSYTFPSPLAIVDPPRAGLHSKVIIAIRKAEHLKQLIYVSCNPKA 546

Query: 328 -------LCRDLSILSTT---HTIERLALFDQFPYTRHMECGVLLVR 364
                  LCR  S          I+ LA+ D FP T H E  +L  R
Sbjct: 547 AMNNFVDLCRAPSNRVKGRPFRPIKALAV-DLFPQTPHFELVILFER 592


>gi|124487421|ref|NP_001074469.1| tRNA (uracil-5-)-methyltransferase homolog A isoform 1 [Mus
           musculus]
          Length = 613

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA    RV+ +E+ + +VE AR N   N ++NV+     +++    
Sbjct: 426 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 485

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +      +RL      S++   + +DPPR+GL    +  ++   +I   LY+SCNP +  
Sbjct: 486 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 534

Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T  H ++ +A+ D FP T H E  +L  R
Sbjct: 535 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 578


>gi|15900900|ref|NP_345504.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4]
 gi|111658257|ref|ZP_01408949.1| hypothetical protein SpneT_02000571 [Streptococcus pneumoniae
           TIGR4]
 gi|50401653|sp|Q97R12|Y1029_STRPN RecName: Full=Uncharacterized RNA methyltransferase SP_1029
 gi|14972502|gb|AAK75144.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae TIGR4]
          Length = 543

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  +++   + 
Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 368 WLKE------------GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|330832578|ref|YP_004401403.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3]
 gi|329306801|gb|AEB81217.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3]
          Length = 452

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  ++ N A N ++NV  V  S++   Q 
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              +              +   IFVDPPR GL ++ +       P  I+YISCN  ++ R
Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + + ++   D FP T H+E   LL ++
Sbjct: 416 DIKLYEELGYKLTKVQPTDLFPNTHHVEVVSLLEKR 451


>gi|300704420|ref|YP_003746023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia solanacearum
           CFBP2957]
 gi|299072084|emb|CBJ43416.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Ralstonia
           solanacearum CFBP2957]
          Length = 448

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 27/197 (13%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++  VL       GD LL+L+CG GNF+L +A     
Sbjct: 257 GITMPFKPTD--FTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGRE 314

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E ++     A  N   N ++          + T A R   E +   DI     RF 
Sbjct: 315 VMGIEGSEALTTRALANAQHNGLD---------AKTTFACRNLFEVS-ADDIAALG-RFD 363

Query: 294 TIFVDPPRSG---LDDATVGMVQAYPH--------ILYISCNPDSLCRDLSIL--STTHT 340
              VDPPR G   +  A   + Q+           I+Y+SCNP +L RD  +L     + 
Sbjct: 364 RWLVDPPREGALAVSKALAELSQSGSEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 423

Query: 341 IERLALFDQFPYTRHME 357
           +    + + FP+T H+E
Sbjct: 424 LSGAGVVNMFPHTSHVE 440


>gi|15800611|ref|NP_286625.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           EDL933]
 gi|15830193|ref|NP_308966.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. Sakai]
 gi|168750044|ref|ZP_02775066.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756654|ref|ZP_02781661.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4401]
 gi|168763290|ref|ZP_02788297.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4501]
 gi|168767370|ref|ZP_02792377.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776401|ref|ZP_02801408.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779412|ref|ZP_02804419.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787081|ref|ZP_02812088.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC869]
 gi|168799858|ref|ZP_02824865.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC508]
 gi|195936904|ref|ZP_03082286.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. EC4024]
 gi|208814964|ref|ZP_03256143.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822279|ref|ZP_03262598.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399215|ref|YP_002269529.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325572|ref|ZP_03441656.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254792055|ref|YP_003076892.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|261225509|ref|ZP_05939790.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258522|ref|ZP_05951055.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281858|ref|YP_003498676.1| 23S rRNA (uracil-5-)-methyltransferase rumB (23S rRNA(M-
           5-U747)-methyltransferase) [Escherichia coli O55:H7 str.
           CB9615]
 gi|20455386|sp|Q8X6Q5|RUMB_ECO57 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725402|sp|B5YSF1|RUMB_ECO5E RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|12513874|gb|AAG55235.1|AE005266_14 putative enzyme [Escherichia coli O157:H7 str. EDL933]
 gi|13360398|dbj|BAB34362.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
 gi|187768226|gb|EDU32070.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4196]
 gi|188015750|gb|EDU53872.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002792|gb|EDU71778.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356313|gb|EDU74732.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363523|gb|EDU81942.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366522|gb|EDU84938.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373116|gb|EDU91532.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC869]
 gi|189377769|gb|EDU96185.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC508]
 gi|208731612|gb|EDZ80300.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737764|gb|EDZ85447.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160615|gb|ACI38048.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4115]
 gi|209775338|gb|ACI85981.1| putative enzyme [Escherichia coli]
 gi|209775340|gb|ACI85982.1| putative enzyme [Escherichia coli]
 gi|209775342|gb|ACI85983.1| putative enzyme [Escherichia coli]
 gi|209775344|gb|ACI85984.1| putative enzyme [Escherichia coli]
 gi|209775346|gb|ACI85985.1| putative enzyme [Escherichia coli]
 gi|217321793|gb|EEC30217.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254591455|gb|ACT70816.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290761731|gb|ADD55692.1| 23S rRNA (uracil-5-)-methyltransferase rumB (23S rRNA(M-
           5-U747)-methyltransferase) [Escherichia coli O55:H7 str.
           CB9615]
 gi|320192660|gb|EFW67301.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320637725|gb|EFX07517.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. G5101]
 gi|320642849|gb|EFX12050.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H-
           str. 493-89]
 gi|320648306|gb|EFX16961.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H-
           str. H 2687]
 gi|320654143|gb|EFX22211.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659767|gb|EFX27323.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664237|gb|EFX31388.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. LSU-61]
 gi|326338251|gb|EGD62080.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|326346228|gb|EGD69966.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. 1044]
          Length = 375

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIALEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + IER+ LFD FP+T H E   LLV+
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVK 374


>gi|283833842|ref|ZP_06353583.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Citrobacter youngae
           ATCC 29220]
 gi|291070510|gb|EFE08619.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Citrobacter youngae
           ATCC 29220]
          Length = 375

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 19/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N  +  H+        + +  D + +L+CG G F L  A    ++  +EIA  +
Sbjct: 208 QSFFQTNPVVAGHLYATARDWVRQLPVDHMWDLFCGVGGFGLHCATPQMKLTGIEIAPEA 267

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +  A+ +     + N+    + S +F  A         + D+         + V+PPR G
Sbjct: 268 IACAKQSAQELGLQNLHFQALDSTQFATAQ------GEVPDL---------VLVNPPRRG 312

Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +       +   A   I+Y SCN  ++ +D+  L   + I+R+ LFD FP+T H E   L
Sbjct: 313 IGKPLCDFLSHMAPRFIIYSSCNAQTMAKDIHELPG-YRIDRVQLFDMFPHTAHYEVLTL 371

Query: 362 LVRK 365
           L R+
Sbjct: 372 LSRR 375


>gi|219871204|ref|YP_002475579.1| 23S rRNA methyluridine methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219691408|gb|ACL32631.1| 23S rRNA methyluridine methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 389

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 23/161 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           L +L+CG G F L  A           +  +EI+  ++ +A  +     + NVK   + S
Sbjct: 242 LWDLFCGVGGFGLHCANTLQTNNPNVALTGIEISASAIASATKSAQQLGLQNVKFASLDS 301

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
            +F        E     D+         + V+PPR G+       +     P+++Y SCN
Sbjct: 302 AQFAL-----NEQGTTPDL---------VIVNPPRRGIGKPLAEFINQLGSPYLIYSSCN 347

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +++ +D + LS  + ++++ LFD FP+T H E    LV K
Sbjct: 348 AETMAKDFASLSH-YELKKVQLFDMFPHTAHYEVLTFLVNK 387


>gi|148665095|gb|EDK97511.1| HpaII tiny fragments locus 9c, isoform CRA_e [Mus musculus]
          Length = 626

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA    RV+ +E+ + +VE AR N   N ++NV+     +++    
Sbjct: 439 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 498

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +      +RL      S++   + +DPPR+GL    +  ++   +I   LY+SCNP +  
Sbjct: 499 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 547

Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T  H ++ +A+ D FP T H E  +L  R
Sbjct: 548 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 591


>gi|255074621|ref|XP_002500985.1| predicted protein [Micromonas sp. RCC299]
 gi|226516248|gb|ACO62243.1| predicted protein [Micromonas sp. RCC299]
          Length = 473

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 32/186 (17%)

Query: 195 NVHMLEWVLAATK---GIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           N    E ++AA +   G  GD    +L+L+CG G   L +A+    V   E+   +V+ A
Sbjct: 303 NTDQAEKLVAAVEDACGFSGDGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKDA 362

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N  AN + N    R    +   +         L   DI       +  DP R+G+D++
Sbjct: 363 ERNAEANGITNATFRRGDLAKLKAS---------LPGPDI-------VIADPARAGMDES 406

Query: 308 TVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIER-------LALFDQFPYTRHMEC 358
            V ++++     I+Y+SCNP +  RDL  L      E            D FP+T H+E 
Sbjct: 407 LVKVLRSIGAERIVYVSCNPATQARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVET 466

Query: 359 GVLLVR 364
            V+L R
Sbjct: 467 VVVLDR 472


>gi|144574968|gb|AAZ43532.2| putative tRNA (Uracil-5-) -methyltransferase [Mycoplasma synoviae
           53]
          Length = 432

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 29/206 (14%)

Query: 175 GRTLI-------YRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV 226
           G+T +       +  + +SF Q N  +  ++ + +      +    L++ YCG G  ++ 
Sbjct: 240 GKTFVQRIGVNKFNVLNDSFFQVNGPVAKYLFDDLAELISKVNSKSLIDFYCGVGAITIY 299

Query: 227 LARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           LA  F  +     E  + +++ A  N+  N +N  KI  +             +F+  K 
Sbjct: 300 LATKFPELDFYGYEKNRFAIKIANENVLINKLNPEKIKFL-------------KFDLDKK 346

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILS--TTH 339
           ++   ++   IF DPPR+GL      +V   +   +I YISCNP +L RD+  ++  +  
Sbjct: 347 LNDKVFQDSVIF-DPPRAGLSQNLKLLVLNSENVKNIFYISCNPRTLVRDVKEITEKSNF 405

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            I+ +  +D FP T H+E  V L R+
Sbjct: 406 KIKFIKGYDMFPQTHHIETLVWLSRE 431


>gi|182683977|ref|YP_001835724.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14]
 gi|182629311|gb|ACB90259.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae
           CGSP14]
          Length = 541

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  +++     
Sbjct: 308 IIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAE----- 362

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
                  N +K       +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 363 -------NAMKKWLKEGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|284920712|emb|CBG33775.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli 042]
          Length = 375

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
              + E   L            + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 ---QGEVPGL------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|302821947|ref|XP_002992634.1| hypothetical protein SELMODRAFT_448840 [Selaginella moellendorffii]
 gi|300139598|gb|EFJ06336.1| hypothetical protein SELMODRAFT_448840 [Selaginella moellendorffii]
          Length = 636

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           EW   A  G    L ++ CG G   L LAR    V+ +EI   +V  A  N   N+++N 
Sbjct: 429 EW---AGLGPNTLLFDICCGTGTIGLTLARKVGMVVGIEINADAVTDALTNAKLNNISNC 485

Query: 260 KIVRMSSKEFTQAMRREREF-------NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           + V   +++    +  E E        +   D D   +    + VDPPRSGL       +
Sbjct: 486 RFVCAKAEDVVNKLLNEYEVLPEESSEDNAMDTDKKRFSNVVVIVDPPRSGLHPTVTKAL 545

Query: 313 QAYP---HILYISCNPDSL 328
           + +     ++Y+SCNPD+L
Sbjct: 546 RVHSRLKRLVYVSCNPDTL 564


>gi|301020623|ref|ZP_07184698.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           69-1]
 gi|300398599|gb|EFJ82137.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           69-1]
          Length = 375

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + IER+ LFD FP+T H E   LL ++
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLLAKQ 375


>gi|16128827|ref|NP_415380.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107710|ref|AP_001490.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|170080518|ref|YP_001729838.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|238900118|ref|YP_002925914.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli BW2952]
 gi|256023514|ref|ZP_05437379.1| 23S rRNA methyluridine methyltransferase [Escherichia sp. 4_1_40B]
 gi|301027629|ref|ZP_07190949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           196-1]
 gi|307137487|ref|ZP_07496843.1| 23S rRNA methyluridine methyltransferase [Escherichia coli H736]
 gi|331641380|ref|ZP_08342515.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H736]
 gi|2501407|sp|P75817|RUMB_ECOLI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725405|sp|B1X800|RUMB_ECODH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|259495632|sp|C4ZY31|RUMB_ECOBW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|1787083|gb|AAC73946.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|4062444|dbj|BAA35573.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|169888353|gb|ACB02060.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|238859754|gb|ACR61752.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli BW2952]
 gi|260449994|gb|ACX40416.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli DH1]
 gi|299879231|gb|EFI87442.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           196-1]
 gi|315135508|dbj|BAJ42667.1| 23S rRNA methyluridine methyltransferase [Escherichia coli DH1]
 gi|323942776|gb|EGB38941.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E482]
 gi|323969577|gb|EGB64865.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA007]
 gi|331038178|gb|EGI10398.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H736]
          Length = 375

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L     IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|322698538|gb|EFY90307.1| tRNA (uracil-5-)-methyltransferase [Metarhizium acridum CQMa 102]
          Length = 569

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 23/162 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFT 270
           L++ Y G+G F++ L+  F     ++IA  S+ +AR N + N +     + +   + E  
Sbjct: 406 LIDAYSGSGLFTITLSSVFQHSTGIDIAADSIASARNNASLNGLGEDRCQFIAADAGELF 465

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
           +++              +      + +DPPR G D   +G ++ +    ILY+SCN  + 
Sbjct: 466 KSV-------------TYPADETVVVLDPPRKGCDADFLGQLRTFGPKRILYVSCNVHTQ 512

Query: 329 CRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ IL         + IE L  FD FP T H+E   +L R
Sbjct: 513 ARDVGILVRAEGDGARYDIESLVGFDFFPQTGHVEGVAILNR 554


>gi|124487423|ref|NP_001074468.1| tRNA (uracil-5-)-methyltransferase homolog A isoform 2 [Mus
           musculus]
 gi|74139903|dbj|BAE31790.1| unnamed protein product [Mus musculus]
 gi|74141122|dbj|BAE22119.1| unnamed protein product [Mus musculus]
 gi|74191426|dbj|BAE30293.1| unnamed protein product [Mus musculus]
 gi|74191631|dbj|BAE30387.1| unnamed protein product [Mus musculus]
 gi|74198831|dbj|BAE30643.1| unnamed protein product [Mus musculus]
 gi|74198924|dbj|BAE30683.1| unnamed protein product [Mus musculus]
 gi|74207465|dbj|BAE30911.1| unnamed protein product [Mus musculus]
 gi|74212582|dbj|BAE31030.1| unnamed protein product [Mus musculus]
 gi|74214625|dbj|BAE31153.1| unnamed protein product [Mus musculus]
 gi|74219662|dbj|BAE29598.1| unnamed protein product [Mus musculus]
 gi|74220248|dbj|BAE31303.1| unnamed protein product [Mus musculus]
 gi|74225302|dbj|BAE31584.1| unnamed protein product [Mus musculus]
 gi|74225530|dbj|BAE31672.1| unnamed protein product [Mus musculus]
 gi|74228782|dbj|BAE21880.1| unnamed protein product [Mus musculus]
 gi|148665091|gb|EDK97507.1| HpaII tiny fragments locus 9c, isoform CRA_a [Mus musculus]
          Length = 613

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA    RV+ +E+ + +VE AR N   N ++NV+     +++    
Sbjct: 426 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 485

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +      +RL      S++   + +DPPR+GL    +  ++   +I   LY+SCNP +  
Sbjct: 486 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 534

Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T  H ++ +A+ D FP T H E  +L  R
Sbjct: 535 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 578


>gi|188495997|ref|ZP_03003267.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           53638]
 gi|188491196|gb|EDU66299.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           53638]
          Length = 375

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L     IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|332342247|gb|AEE55581.1| 23S rRNA methyluridine methyltransferase RumB [Escherichia coli
           UMNK88]
          Length = 375

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L     IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|281201614|gb|EFA75823.1| Dyp-type peroxidase family protein [Polysphondylium pallidum PN500]
          Length = 817

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 23/153 (15%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M++  +      + D + +L+CG+GNF+  +A++  +V+A++ A  S+ 
Sbjct: 344 FIQVNKQVNKLMIDQAIEFLDLNKNDFVYDLFCGSGNFTFPIAKYCQQVVAIDYASNSL- 402

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A+ N+  N      +V ++   +  ++  + + N+             I +DPPRSG +
Sbjct: 403 -AKPNLGDN------VVSLNYNLYEYSIDYDAKCNK-------------ILLDPPRSGAE 442

Query: 306 DATVGMVQAYPHILYISCNPD-SLCRDLSILST 337
                M   +  I+YISC+P  SL RDL IL +
Sbjct: 443 KVCNEMPDNFERIVYISCDPSGSLIRDLKILKS 475


>gi|146318257|ref|YP_001197969.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           05ZYH33]
 gi|146320451|ref|YP_001200162.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           98HAH33]
 gi|253751426|ref|YP_003024567.1| RNA methyltransferase [Streptococcus suis SC84]
 gi|253753327|ref|YP_003026468.1| RNA methyltransferase [Streptococcus suis P1/7]
 gi|253755843|ref|YP_003028983.1| RNA methyltransferase [Streptococcus suis BM407]
 gi|145689063|gb|ABP89569.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           05ZYH33]
 gi|145691257|gb|ABP91762.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           98HAH33]
 gi|251815715|emb|CAZ51315.1| putative RNA methyltransferase [Streptococcus suis SC84]
 gi|251818307|emb|CAZ56118.1| putative RNA methyltransferase [Streptococcus suis BM407]
 gi|251819573|emb|CAR45243.1| putative RNA methyltransferase [Streptococcus suis P1/7]
 gi|292558055|gb|ADE31056.1| tRNA (uracil-5-)-methyltransferase/TrmA [Streptococcus suis GZ1]
          Length = 452

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  ++ N A N ++NV  V  S++   Q 
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              +              +   IFVDPPR GL ++ +       P  I+YISCN  ++ R
Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + + ++   D FP T H+E   LL ++
Sbjct: 416 DIKLYEELGYKLTKVQPADLFPNTHHIEVVGLLEKR 451


>gi|74138627|dbj|BAE27134.1| unnamed protein product [Mus musculus]
          Length = 634

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA    RV+ +E+ + +VE AR N   N ++NV+     +++    
Sbjct: 426 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 485

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +      +RL      S++   + +DPPR+GL    +  ++   +I   LY+SCNP +  
Sbjct: 486 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 534

Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T  H ++ +A+ D FP T H E  +L  R
Sbjct: 535 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 578


>gi|148665092|gb|EDK97508.1| HpaII tiny fragments locus 9c, isoform CRA_b [Mus musculus]
          Length = 606

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA    RV+ +E+ + +VE AR N   N ++NV+     +++    
Sbjct: 419 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 478

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +      +RL      S++   + +DPPR+GL    +  ++   +I   LY+SCNP +  
Sbjct: 479 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 527

Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T  H ++ +A+ D FP T H E  +L  R
Sbjct: 528 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 571


>gi|304385720|ref|ZP_07368064.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
           DSM 20284]
 gi|304328224|gb|EFL95446.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
           DSM 20284]
          Length = 490

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L LA     +  ++    ++  A  N   N + N +    S+++    
Sbjct: 346 IVDAYSGVGTIGLSLASEAKEIRGMDTIADAITDANENARLNSITNTRYEVGSAEKLLPK 405

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR GLD   +  +   A  H  Y+SCNP +L R
Sbjct: 406 WLKE------------GFQPDGIVVDPPRVGLDRRLIDAILKSAPKHFAYVSCNPSTLAR 453

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL  L   + +E +   D FP T  +E  V L 
Sbjct: 454 DLVPLVKKYRVEYIQSIDMFPQTARVEAVVKLT 486


>gi|229495436|ref|ZP_04389171.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC
           35406]
 gi|229317879|gb|EEN83777.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC
           35406]
          Length = 475

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235
           L +R    SF Q N+   + +   V  +  G+ G+  + +LY G G  +  +AR   +V+
Sbjct: 295 LTFRIGPKSFYQTNSHQALELYR-VARSFAGLTGEEIVYDLYTGTGTIANFVARDAKKVV 353

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E    ++E A  N   N ++N        K+        R  +   D+         +
Sbjct: 354 GIEYIPEAIEDAHLNSQVNKIDNTIFYAGDMKDILTPELIAR--HGAPDV---------V 402

Query: 296 FVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
             DPPR+G+    +  +   A P I+Y+SCNP +  RD ++L    + + ++   D FP+
Sbjct: 403 ITDPPRAGMHPDVIKTLLGAAPPRIVYVSCNPATQARDAALLVEGGYRVLKVQPVDMFPH 462

Query: 353 TRHMECGVLL 362
           T H+E  +LL
Sbjct: 463 THHVENVMLL 472


>gi|167855165|ref|ZP_02477936.1| hypothetical protein HPS_07413 [Haemophilus parasuis 29755]
 gi|167853710|gb|EDS24953.1| hypothetical protein HPS_07413 [Haemophilus parasuis 29755]
          Length = 389

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 23/161 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           L +L+CG G F L  A           +  +EI+  ++ +A  +     + NVK   + S
Sbjct: 242 LWDLFCGVGGFGLHCAHTLQATNPNVALTGIEISASAIASATKSAQQLGLQNVKFASLDS 301

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
            +F  A+  +     L            + V+PPR G+       +     P+++Y SCN
Sbjct: 302 AQF--ALNEQGTTPDL------------VIVNPPRRGIGKPLAEFINQLGSPYLIYSSCN 347

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +++ +D + LS  + ++++ LFD FP+T H E    LV K
Sbjct: 348 AETMAKDFASLSH-YELKKVQLFDMFPHTAHYEVLTFLVNK 387


>gi|116283517|gb|AAH27431.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Mus
           musculus]
 gi|116283883|gb|AAH38486.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Mus
           musculus]
          Length = 602

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA    RV+ +E+ + +VE AR N   N ++NV+     +++    
Sbjct: 415 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 474

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +      +RL      S++   + +DPPR+GL    +  ++   +I   LY+SCNP +  
Sbjct: 475 L-----VSRLS-----SHQLVAV-LDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 523

Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T  H ++ +A+ D FP T H E  +L  R
Sbjct: 524 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 567


>gi|300947051|ref|ZP_07161272.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           116-1]
 gi|301646296|ref|ZP_07246187.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           146-1]
 gi|300453290|gb|EFK16910.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           116-1]
 gi|301075499|gb|EFK90305.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           146-1]
 gi|315619866|gb|EFV00385.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 3431]
          Length = 358

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 220 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 279

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 280 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 324

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L     IER+ LFD FP+T H E   LLV++
Sbjct: 325 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 358


>gi|309701137|emb|CBJ00435.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli ETEC
           H10407]
 gi|323937966|gb|EGB34228.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           E1520]
          Length = 375

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L     IER+ LFD FP+T H E   LLV++
Sbjct: 342 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 375


>gi|300957062|ref|ZP_07169308.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           175-1]
 gi|300316202|gb|EFJ65986.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           175-1]
          Length = 358

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 220 MWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA 279

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 280 QGDVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAK 324

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L     IER+ LFD FP+T H E   LLV++
Sbjct: 325 DIRELPGFR-IERVQLFDMFPHTAHYEVLTLLVKQ 358


>gi|302837995|ref|XP_002950556.1| hypothetical protein VOLCADRAFT_60616 [Volvox carteri f.
           nagariensis]
 gi|300264105|gb|EFJ48302.1| hypothetical protein VOLCADRAFT_60616 [Volvox carteri f.
           nagariensis]
          Length = 206

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 178 LIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
           L +R    SF Q N   A +   ++        G    +L+LYCG G   L LA    RV
Sbjct: 12  LKFRISPGSFFQTNTRQAEVLYDVVRRAAGLRPGAVDTVLDLYCGTGTIGLSLAGECRRV 71

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L VE+ + ++E AR N A N ++NV+   + +     A           D+         
Sbjct: 72  LGVEVLESAIEDARANAALNAISNVEF--LCADAPAAAAAASPTAVTTPDV--------- 120

Query: 295 IFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHT----IERLALFD 348
           + VDP R G  LD A+         ++Y+SCN  +  RDL  L         +  +   D
Sbjct: 121 VIVDPARGGLTLDAASFLSRCGARRVVYVSCNVATQARDLDRLCNGSGAPFRLVSVQPVD 180

Query: 349 QFPYTRHMECGVLLVRK 365
            FP+T H+E   +L RK
Sbjct: 181 MFPHTDHVETVAVLDRK 197


>gi|284799691|ref|ZP_05984596.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria subflava
           NJ9703]
 gi|284797230|gb|EFC52577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria subflava
           NJ9703]
          Length = 465

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 23/179 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ NA +N  M+   +      +G+ + +L+CG GNFSL LA+    V+ +E A   V+
Sbjct: 295 FTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGAYYLVD 354

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID---IHSY-RFKTIFVDPPR 301
            AR N   N           +  F+ A         L D D   + S+ +F  + +DPPR
Sbjct: 355 RARENARLNRC-------AENMTFSVA--------DLFDTDEKTVESWGKFDKMLLDPPR 399

Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           SG       + + +    I+Y+SCNP +  RD  +L    +  +   + + F  T H+E
Sbjct: 400 SGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMNMFAQTSHVE 458


>gi|270290024|ref|ZP_06196250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
           acidilactici 7_4]
 gi|270281561|gb|EFA27393.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
           acidilactici 7_4]
          Length = 490

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L LA     +  ++    ++  A  N   N + N +    S+++    
Sbjct: 346 IVDAYSGVGTIGLSLASEAKEIRGMDTIADAITDANENARLNSITNARYEVGSAEKLLPK 405

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
             +E             ++   I VDPPR GLD   +  +   A  H  Y+SCNP +L R
Sbjct: 406 WLKE------------GFQPDGIVVDPPRVGLDRRLIDAILKSAPKHFAYVSCNPSTLAR 453

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL  L   + +E +   D FP T  +E  V L 
Sbjct: 454 DLVPLVKKYRVEYIQSIDMFPQTARVEAVVKLT 486


>gi|148998851|ref|ZP_01826287.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|307067795|ref|YP_003876761.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|147755278|gb|EDK62329.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|301794164|emb|CBW36574.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104]
 gi|306409332|gb|ADM84759.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
          Length = 543

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A+H   V  VE+   +VE ++ N + N + N   V  +++   + 
Sbjct: 308 VIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCR 330
             +E              +   I VDPPR GL ++ +          I YISCN  ++ R
Sbjct: 368 WLKE------------GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 450


>gi|161503956|ref|YP_001571068.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189045735|sp|A9MIM3|RUMB_SALAR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|160865303|gb|ABX21926.1| hypothetical protein SARI_02048 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 375

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  AR + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACARQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQIAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLP-NYRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|42525152|ref|NP_970532.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|51316634|sp|Q6MGU3|Y3828_BDEBA RecName: Full=Uncharacterized RNA methyltransferase Bd3828
 gi|39577363|emb|CAE81186.1| hypothetical RNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
          Length = 393

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 29/184 (15%)

Query: 186 SFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKP 242
            F+Q N   N  +L   L  A  G    + +LY G GNF+  LA  +    ++ VE+   
Sbjct: 218 GFSQVNRFQNEDLLRTALDWAGDGPYKKVYDLYAGAGNFTFPLAAKYAGSEIIGVELNPK 277

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            VE AR  I             + K  T  M     + R   I     +   + +DPPR+
Sbjct: 278 LVERARSKI-------------TDKRMTYFMSDVETYMRRASIG----KDDLVVLDPPRA 320

Query: 303 GLDDATV-GMVQAYP-HILYISCNPDSLCRDLS-------ILSTTHTIERLALFDQFPYT 353
           G  + T+  +  A P  I+YISC+P SL RDL+        L   + ++R+  F+ FP T
Sbjct: 321 GASEYTMQTLAAAQPRKIIYISCHPVSLARDLNWFFAQTQKLGIKYKLDRVQTFEMFPQT 380

Query: 354 RHME 357
            H+E
Sbjct: 381 DHVE 384


>gi|261856300|ref|YP_003263583.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Halothiobacillus
           neapolitanus c2]
 gi|261836769|gb|ACX96536.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Halothiobacillus
           neapolitanus c2]
          Length = 379

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 146/396 (36%), Gaps = 72/396 (18%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           L D Y  QL  K+ R +  +       L I  S    +R +A+  +  D       + D 
Sbjct: 17  LADPYADQLQRKMARCQSALTGLGGVWLPIVPSAETAFRNKAKMVVCGDASSPCLGILDA 76

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------------LRAKLFQIDYL-- 110
                        G  L N  +     T   EPL             ++ +  ++ YL  
Sbjct: 77  DDD----------GIDLSNCPLYPTAITEAFEPLKQMIRRLGIPPYDVKKRQGELKYLLI 126

Query: 111 -TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI--------------QLIGRA 155
             S+ D +++  +  R   D W E   RLR  L      +              Q I   
Sbjct: 127 TVSEDDDSLMVRLVLR--SDIWIE---RLRADLSTLTADLPHLAVLSVNIQPVHQAILEG 181

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQG 211
            +  I  DR    E LTV    L +     SF Q N  +   +      WV A    +  
Sbjct: 182 EQEVILTDR----ETLTVHLNGLPFHLRPKSFFQTNTRVAEQLYATARSWV-AEVAPVH- 235

Query: 212 DLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            + +L+CG G F+L  A     +V  +EI+  ++ +A+ +     + NV    + + EF 
Sbjct: 236 -MWDLFCGVGGFALHCADVIPGQVTGIEISAEAIASAQQSALELGLKNVSFHALGANEFI 294

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
                  +   L            + V+PPR GL       +       ++Y SCNP+SL
Sbjct: 295 DQAVSLPQMPAL------------VVVNPPRRGLGVGLCAFLDESVVQTVIYSSCNPESL 342

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            RDL ++     + +  +FD FP+T H E   +LVR
Sbjct: 343 ARDLVMMPGFELV-KAQVFDLFPHTAHSEVLAMLVR 377


>gi|118465758|ref|YP_882757.1| RNA methyltransferase [Mycobacterium avium 104]
 gi|118167045|gb|ABK67942.1| putative RNA methyltransferase [Mycobacterium avium 104]
          Length = 395

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 37/191 (19%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLA 236
           YR +   + QP AG    M  W             +LY G G F+  L        RVL+
Sbjct: 236 YRALVLDWAQPGAG----MTAW-------------DLYGGAGVFAAALGEAVGESGRVLS 278

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           V+ ++ S  AAR  +A     ++  V++ +    +A+  +R      D+ +         
Sbjct: 279 VDTSRASTRAARAALA-----DLPQVQVVTDSVRRALAAQRTPALQADVAV--------- 324

Query: 297 VDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYT 353
           +DPPR+G     +  + A   P I++I C   S  RD+ I L   +T+E++ +FD FP T
Sbjct: 325 LDPPRAGAGREVIDSLSAAGVPRIVHIGCEAASFARDMGIYLGHGYTVEKIRVFDAFPLT 384

Query: 354 RHMECGVLLVR 364
            H EC  LL R
Sbjct: 385 HHSECVALLTR 395


>gi|145513256|ref|XP_001442539.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409892|emb|CAK75142.1| unnamed protein product [Paramecium tetraurelia]
          Length = 559

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 31/294 (10%)

Query: 87  MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146
           M+ +  + R + LL +     D L  Q + A+V      L   ++ E +++    +H+ K
Sbjct: 272 MLSVRKSDRTKQLLISVSINKDNL-QQDEYAVVCDELMTLFSTSYGEFSLQGLLLMHSNK 330

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
               L   A+ TKI     Y  E +      + Y    N+F+Q +      + + ++   
Sbjct: 331 LGQDLASSADDTKILFGNSYYQEIILDKKINISY----NAFSQNHTPQCDKLYQVIIDLC 386

Query: 207 KGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           K  +    L+L  G+G   + ++     +LA+E+ K S E A  N   N++ N +I+   
Sbjct: 387 KNKKITKFLDLCAGSGTIGICVSDQIQDILAIEMNKSSCEDACENYKLNNLQNCQIICSK 446

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIF---VDPPRSGLDDATVGMV---QAYPHIL 319
            ++  + + +          D+ S+  K      +DPPR+G+ +  +  +   +   HI+
Sbjct: 447 VEDVIKKVAQ----------DLKSFEGKQQLMACLDPPRAGVLNNVIEAIRTCKGIDHII 496

Query: 320 YISCNPDSLCRDLSILSTTHTIERLA---------LFDQFPYTRHMECGVLLVR 364
           Y+SC+P  +  +L  L      +  A         L D FP T H E    L R
Sbjct: 497 YVSCSPPQVIDNLIQLCLPQCKKNKAPGFKLVNVTLVDMFPQTSHFEAVFYLER 550


>gi|317403057|gb|EFV83592.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Achromobacter
           xylosoxidans C54]
          Length = 501

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 33/208 (15%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           RD +   +   G  + YR  +  FTQ N  IN  M+   L   +    D + +L+CG GN
Sbjct: 241 RDALTYTMPEFGLRMPYRPTD--FTQVNHAINRAMVSRALQLLEVQPTDRVADLFCGLGN 298

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+L LA      + VE +K   + A +  AA H                 +     F  L
Sbjct: 299 FTLPLATQGREAVGVEGSKALTDRA-HEAAARH----------------GLGERTSFATL 341

Query: 283 K--DIDIHSYR----FKTIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRD 331
              ++D+   R    F  + +DPPR G       + Q         I+Y+SCNP +L RD
Sbjct: 342 NLFEVDVEWLRGLGFFDRMLIDPPREGAQAVAQALSQLKAEERPRRIVYVSCNPATLARD 401

Query: 332 LSIL--STTHTIERLALFDQFPYTRHME 357
            +I+     + ++   + + FP+T H+E
Sbjct: 402 AAIMVHEGGYLLKSAGVINMFPHTGHVE 429


>gi|312796086|ref|YP_004029008.1| 23S rRNA m(5)U 1939 methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312167861|emb|CBW74864.1| 23S rRNA m(5)U 1939 methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 507

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 25/184 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   +      + D +L+L+CG GNF+L LAR    V+ +E +    +
Sbjct: 328 FTQVNHQINRVLVGRAVRLLAPARTDRVLDLFCGLGNFTLPLARRAREVVGIEGSDALTQ 387

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSGL 304
            A+ N   N +       M            R    +   D+ +  RF    +DPPR G 
Sbjct: 388 RAQANARVNGLEARTSFAM------------RNLFEVGAADLRALGRFDKFLIDPPREGA 435

Query: 305 --------DDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353
                   + A  G     P  I+Y+SCNP +L RD  +L     + +    + + FP+T
Sbjct: 436 LAVAKALGELAQTGDAACLPGRIVYVSCNPATLARDAGLLVHEAGYRLVGAGVVNMFPHT 495

Query: 354 RHME 357
            H+E
Sbjct: 496 SHVE 499


>gi|158300145|ref|XP_320147.4| AGAP012408-PA [Anopheles gambiae str. PEST]
 gi|157013016|gb|EAA00138.4| AGAP012408-PA [Anopheles gambiae str. PEST]
          Length = 577

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 18/166 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG G   L  ARH  +VL V+I + ++E A++N   N + N      +S +   
Sbjct: 392 SILDICCGTGTIGLCFARHCKQVLGVDIVEQAIEDAKHNAQKNGIENCSFFAGNSDDLIM 451

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDS- 327
           ++ R    N + D     +      VDPPR+GL   ++  +   +    ++Y+SC+P S 
Sbjct: 452 SLIRHA--NIMPD----QHESLIAIVDPPRAGLHIRSITQLRNARGLDKLVYVSCSPQSA 505

Query: 328 ------LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
                 L R  S  +       ++    D FP+T H E  +L  R+
Sbjct: 506 IKNWVDLMRPCSKQLRGEPFVAKKAMAVDLFPHTPHTELVILFERE 551


>gi|241688185|ref|XP_002412851.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
 gi|215506653|gb|EEC16147.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
          Length = 399

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 79/203 (38%), Gaps = 26/203 (12%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLA 236
           L +R    SF Q N+ +   M + V       Q   LL++ CG G   L +AR    V  
Sbjct: 208 LRFRLSPESFFQVNSAVAGFMYDAVRQMLDCNQHSTLLDICCGTGTIGLTMARGIHSVFG 267

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           ++ +  +VE A YN   N + N + V   ++     MR E     L  +           
Sbjct: 268 MDASSQAVEDASYNAQLNGITNARFVAGRAEHLVPNMRNEFFAEELCAV----------- 316

Query: 297 VDPPRSGLDDATVGMVQAYPHI---LYISCNPDS--------LCRDLS---ILSTTHTIE 342
           V+P R GL    +  ++ Y  I   +YISC P+         LCR      +L       
Sbjct: 317 VNPGRGGLSSKAIRAMREYKQIKRLVYISCKPEGVAQDNFVQLCRSTGRSRLLGPPFRPL 376

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
                D FP TRH E  +L  R 
Sbjct: 377 LACPVDMFPQTRHCELIMLFGRS 399


>gi|71064920|ref|YP_263647.1| 23S rRNA 5-methyluridine methyltransferase [Psychrobacter arcticus
           273-4]
 gi|123649629|sp|Q4FUU5|RUMA_PSYA2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|71037905|gb|AAZ18213.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter arcticus
           273-4]
          Length = 512

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 26/190 (13%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR---HFDR 233
           L +  I   FTQ N  +N  M +          G+ +L+L+ G GNFSL LAR       
Sbjct: 329 LTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGS 388

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE ++     A  N   N +NN +        ++Q +  +       D    +  F 
Sbjct: 389 VVGVEGSEAMTIRAADNARRNGINNTEF-------YSQDLTHD-----CTDKPWANQGFD 436

Query: 294 TIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDL-SILSTTHTIERLALF 347
            + +DPPRSG  +    ++Q  P      I+Y+SCNP +L RD  ++L   + +    + 
Sbjct: 437 ALLIDPPRSGAWE----IMQYLPKFNAERIVYVSCNPATLARDTKALLEQGYRLTHAGVM 492

Query: 348 DQFPYTRHME 357
           D F +T H+E
Sbjct: 493 DMFCHTGHVE 502


>gi|316973227|gb|EFV56847.1| putative HpaII tinys locus 9c protein [Trichinella spiralis]
          Length = 490

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 33/209 (15%)

Query: 173 VAGRTLIYRQIEN--------SFTQPN-AGINVHMLEWVLAATKGIQGD---LLELYCGN 220
           + G   +Y  I+N        SF Q N AG  V + + +      +Q D   LL++ CG 
Sbjct: 278 LGGCPHVYETIDNMHFRISPYSFFQVNTAGCEV-LYKTLFELCASVQVDHSLLLDICCGT 336

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + LAR F++V+ +E  +P+V+ A +N+  N   N        +E    +       
Sbjct: 337 GTIGIYLARLFEKVIGIESVEPAVKDACHNMIVNEQFNCDFQAGKVEELLPKL------- 389

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDS-------LCR 330
            LK+ ++  ++     +DPPR G+    +  ++ +    H+ Y+SC+  +       LC+
Sbjct: 390 -LKESNVEKWKTCVAVLDPPRGGVSGRVIAALRCHEPIHHLFYVSCDVQAAEKNFVDLCK 448

Query: 331 DLS--ILSTTHTIERLALFDQFPYTRHME 357
             S         + R+   D FP+T+  E
Sbjct: 449 RASKRYPGPPFRLLRMIPVDMFPHTKLFE 477


>gi|269958068|ref|YP_003327857.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306749|gb|ACZ32299.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 411

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 8/155 (5%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L +LYCG G F+L  A     V  +EI+  +V +A+   A     +     M+   F  
Sbjct: 262 SLWDLYCGVGGFALTCAAPGRAVTGIEISAEAVASAQVTRAELEATDGGPAAMAGVRFAA 321

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLC 329
                         D+     + + V+PPR G+  A    +++     +LY SCN D+L 
Sbjct: 322 GDATAFALG-CDPADVP----ELVIVNPPRRGIGPALADWLESSSARWVLYSSCNADTLA 376

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL  + +     ++ L D FP TRH E   LL R
Sbjct: 377 RDLERMPSLRP-AKVRLLDMFPQTRHYEVLTLLER 410


>gi|116326897|ref|YP_796617.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116329872|ref|YP_799590.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116119641|gb|ABJ77684.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123561|gb|ABJ74832.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 417

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 19/201 (9%)

Query: 169 ERLTVAGRTLIYRQIE-NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           E+++V     I  +I+   F+Q N  +    LE +       Q  +LELYCG+G  ++ L
Sbjct: 230 EKISVPELKEIVWEIQAGGFSQINRYLVASWLEKIFELVPENQDRILELYCGSGLIAIAL 289

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                + +  E +  SV+ A+ N   N   +            + +  E  +     ID 
Sbjct: 290 QSKTKKWIGYEFSLNSVKQAKKNAQRNGFYSCDF---------KTLNLETNW-----IDS 335

Query: 288 HSYRFKTIFV-DPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIER 343
               + + ++ +PPR+GL    +  +++  P   LY SCN  +L RDLS IL+  + +  
Sbjct: 336 EEALYSSFWIMNPPRAGLSKKVLQTLIEKNPRGFLYSSCNHTTLARDLSLILNGNYRLSN 395

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           + L D FP T+H E  V + R
Sbjct: 396 VTLVDFFPRTKHFEVIVKVER 416


>gi|118089359|ref|XP_420190.2| PREDICTED: similar to CXorf34 protein [Gallus gallus]
          Length = 478

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 88/204 (43%), Gaps = 28/204 (13%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235
           L +R   ++F Q N      +L  V+       GD  LL++ CG G   L LARH  +V+
Sbjct: 286 LRFRISPDAFFQVNTS-GAEVLYRVVRELSQAAGDTVLLDVCCGTGTIGLSLARHVSKVI 344

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VEI + ++E AR+N A N ++N +     ++    A+    E            R    
Sbjct: 345 GVEIVQKAIEDARWNAAFNGISNCEFHSGKAEAVIPALLSSWE----------DARPLVA 394

Query: 296 FVDPPRSGLDDATVGMV---QAYPHILYISCNPDS--------LCRDLSI---LSTTHTI 341
            V+P R+G+    V  +   +A   +LYISC P+         LC        L      
Sbjct: 395 VVNPSRAGIHHRVVKAIRSCRAIRRLLYISCKPEGEAMRNFLELCCPPDPRKKLEGEPFA 454

Query: 342 ERLAL-FDQFPYTRHMECGVLLVR 364
             LA+  D FP+T H E  +LL R
Sbjct: 455 PALAVPVDMFPHTAHCELVLLLTR 478


>gi|3183977|emb|CAA39515.1| protein Htf9C [Mus musculus]
          Length = 677

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 25/165 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA    RV+ +E+ + +VE AR N   N ++NV+     +++    
Sbjct: 490 VLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 549

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    +  ++   +I   LY+SCNP +  
Sbjct: 550 L-----VSRLSSHQL------VAVLDPPRAGLHSKVILAIRKAENIKRLLYVSCNPRAAM 598

Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T  H ++ +A+ D FP T H E  +L  R
Sbjct: 599 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 642


>gi|288555150|ref|YP_003427085.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288546310|gb|ADC50193.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
          Length = 471

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G   L LA   + V  +++ + S+  AR N   +  ++      +++E+   
Sbjct: 328 VVDAYCGVGTIGLWLADGAEEVRGMDVIEASIIDARVNADKHGYDHFTYEVGTAEEWLPK 387

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
             +E             ++   + VDPPR+G D+  +  +       ++Y+SCNP +L +
Sbjct: 388 WVKE------------GWKPDVVIVDPPRTGCDETLLRTITGVKPKRVVYVSCNPSTLAK 435

Query: 331 DLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L T  + ++ +   D FP+T  +E   +L +
Sbjct: 436 DVEYLRTKGYKVDNIQPVDMFPWTAQVESVTVLSK 470


>gi|309800304|ref|ZP_07694477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
           SK1302]
 gi|308116088|gb|EFO53591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
           SK1302]
          Length = 454

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L +A++   V  VE+   +VE ++ N   N++ N   V  +++    A
Sbjct: 308 VIDAYSGIGTIGLSVAKYVKEVHGVEVIPEAVENSQKNAVLNNITNAHYVCDTAE---NA 364

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
           M+     N LK+      +   I VDPPR GL ++ +   VQ   + I YISCN  ++ R
Sbjct: 365 MK-----NWLKE----GIQPTAILVDPPRKGLTESFIKASVQTGANRIAYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +     + ++++   D FP T H+E   LL +
Sbjct: 416 DIKLYQELGYELKKVQPVDLFPQTHHVEAVALLSK 450


>gi|163847509|ref|YP_001635553.1| (Uracil-5)-methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222525358|ref|YP_002569829.1| (Uracil-5)-methyltransferase [Chloroflexus sp. Y-400-fl]
 gi|163668798|gb|ABY35164.1| (Uracil-5)-methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222449237|gb|ACM53503.1| (Uracil-5)-methyltransferase [Chloroflexus sp. Y-400-fl]
          Length = 399

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 16/153 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G   L LA+   RV  VE    SV+ A  N   N V+N+  +   +  +     
Sbjct: 258 DLYGGVGVIGLHLAQSAARVDCVESVAESVQLAHQNALMNKVSNIHPICADTLTYL---- 313

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDL 332
           RE+    L            + VDPPR+GL       +++  P  I+Y+SCNP +   DL
Sbjct: 314 REQPTGSLP----------VVVVDPPRTGLGLPVCQELIRIAPQRIVYVSCNPLTQVSDL 363

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             L + + I  L  +D FP+T H+E   +L R+
Sbjct: 364 QHLQSAYRIVGLRGYDMFPHTPHVEVMAVLERR 396


>gi|325577786|ref|ZP_08148061.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160531|gb|EGC72657.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 390

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 31/185 (16%)

Query: 193 GINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFD-------RVLAVEIAKPS 243
           G+     +WV  L  TK     L +L+CG G F L  A+           +  +EI+  +
Sbjct: 226 GLYATAQDWVQDLPITK-----LWDLFCGVGGFGLHCAKALQDKHQQEVELTGIEISPSA 280

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++AA  +     +NNVK   + +  F       +                 + V+PPR G
Sbjct: 281 IQAATLSAQVLGLNNVKFQSLDAANFALTQDENKP--------------DLVIVNPPRRG 326

Query: 304 LDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +       + +  PH ILY SC   S+ +DL  L T + + ++ LFD FP+T H E   L
Sbjct: 327 IGKELAEFLNEMQPHFILYSSCKAISMGKDLQHL-TNYKLTQIQLFDMFPHTAHYEALAL 385

Query: 362 LVRKP 366
           L   P
Sbjct: 386 LKLNP 390


>gi|24380145|ref|NP_722100.1| putative RNA methyltransferase [Streptococcus mutans UA159]
 gi|50401574|sp|Q8DSK3|Y1779_STRMU RecName: Full=Uncharacterized RNA methyltransferase SMU_1779c
 gi|24378145|gb|AAN59406.1|AE015005_12 putative RNA methyltransferase [Streptococcus mutans UA159]
          Length = 459

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G+  L  A     V  ++I   ++  A+ N            RM        
Sbjct: 309 LIDAYCGVGSIGLAFANKVKSVRGMDIIPEAITDAKRNAE----------RMGYTNTYYE 358

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           M +    N +       Y+   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L R
Sbjct: 359 MGKAE--NVIPKWYKDGYQASALIVDPPRTGLDEKLLKTLLTYQPEKMVYVSCNVSTLAR 416

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V LV++
Sbjct: 417 DLVQLVKVYEVNYIQSVDMFPHTARTEAVVKLVKR 451


>gi|47227704|emb|CAG09701.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 586

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   + LA+   +V+ +E+ + +VE A+ N   N + NV        EF   
Sbjct: 428 VLDVCCGTGTIGISLAKRVKKVIGIELCQEAVEDAKVNAQLNGLTNV--------EF-HC 478

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
            + E  F  + +  + S    T  VDPPR+GL    +  ++   H   ++Y++CN  +  
Sbjct: 479 GKAEDVFPNILNAVVSSKV--TAIVDPPRAGLHSKVILAIRKAEHLKRLVYVACNAKAAM 536

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T     R    D FP T HME  +LL R
Sbjct: 537 NNFIDLCRAPSNRVHGTPFRPVRAMAVDLFPQTMHMEMLLLLER 580


>gi|168240762|ref|ZP_02665694.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194448777|ref|YP_002044912.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194407081|gb|ACF67300.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205340264|gb|EDZ27028.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 375

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YCIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|56414028|ref|YP_151103.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362951|ref|YP_002142588.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|81360323|sp|Q5PGN2|RUMB_SALPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725414|sp|B5BBV5|RUMB_SALPK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|56128285|gb|AAV77791.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094428|emb|CAR59944.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 375

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + I+R+ LFD FP+T H E   LL R+
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCRQ 375


>gi|240949481|ref|ZP_04753821.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor
           NM305]
 gi|240296054|gb|EER46715.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor
           NM305]
          Length = 391

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+          +  +EI+  ++ +A  +     + NV    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQETNPTVSLTGIEISASAIASATQSAEKLGLKNVTFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F        E   + D+         + V+PPR G+  A    +     P+++Y SCN  
Sbjct: 307 FAL-----NEKGSVPDL---------VIVNPPRRGIGKALAEYLNQLGSPYVIYSSCNAK 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++  D +     + + ++ LFD FP+T H E   LLV+K
Sbjct: 353 TMAEDFASFDN-YALAKVQLFDMFPHTAHYEVLTLLVKK 390


>gi|152980877|ref|YP_001353823.1| 23S rRNA 5-methyluridine methyltransferase [Janthinobacterium sp.
           Marseille]
 gi|151280954|gb|ABR89364.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 457

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 26/267 (9%)

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKIC 161
           L QI+    Q  Q  VT +  R++ +   +  ++L+    LH  ++ +Q  G  +  +  
Sbjct: 189 LPQIELAIGQGAQEKVTAMVLRIMTELSADDEVKLKAFADLHQVQWWLQPAGPDSAYQFY 248

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
              + +   L      + ++  +  FTQ N  IN  ++   L        D + +L+CG 
Sbjct: 249 PTENNLHYALPEFNVKMPFKPTD--FTQVNHQINRVLVARALRLLDAQPTDRIADLFCGL 306

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNF+L +A     V+ +E +    E +  N  AN + +        +   +A  +  +F 
Sbjct: 307 GNFTLPIATQAREVVGIEGSTTLTERSLENAVANGLADK--TSFYCRNLFEA--KAEDFV 362

Query: 281 RLKDIDIHSYRFKTIFVDPPRSG---LDDATVGMVQAYP-----HILYISCNPDSLCRDL 332
            L        +F  + +DPPR G   + +A   + ++ P      I+Y+SCNP +L RD 
Sbjct: 363 ELG-------KFDRMLIDPPRDGALAVCEALSELGKSQPDLLPSRIVYVSCNPSTLARDA 415

Query: 333 SIL--STTHTIERLALFDQFPYTRHME 357
           ++L     + ++   + + FP+T H+E
Sbjct: 416 AVLVNEGLYDLKNAGVINMFPHTSHVE 442


>gi|303232296|ref|ZP_07318994.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium vaginae
           PB189-T1-4]
 gi|302481619|gb|EFL44681.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium vaginae
           PB189-T1-4]
          Length = 458

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 68/155 (43%), Gaps = 21/155 (13%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G F+L LA     V+ VE    S+   +  I      N+  V   S       
Sbjct: 319 FDLYCGAGTFTLPLADACMNVVGVEAQGTSINDLKRCIERESYTNITAVCGDSF------ 372

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
              REF    D D+       I VDPPR+GL    +  + A     I Y+SC+P +L RD
Sbjct: 373 ---REFPH-TDADV-------IVVDPPRAGLAPEVIAKLNAQKARAIAYVSCDPITLSRD 421

Query: 332 LS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +     +  +T   +   D FP + H+EC  LL R
Sbjct: 422 IQRFCAAGVYTPVSIVPVDVFPQSFHVECVTLLER 456


>gi|300087865|ref|YP_003758387.1| maf protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527598|gb|ADJ26066.1| maf protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 612

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 20/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G   F+ +LA    +V+A+E +  +V+ AR NI    + NV+++   ++     
Sbjct: 254 IIDAYAGVATFAALLAPRVKKVIAIEESSAAVKDARVNIKG--LANVELLEARTESVLP- 310

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                   +L D          + +DP R+G     + ++  +P   ++Y+SCNP++L R
Sbjct: 311 -----HLGKLAD---------AVIIDPSRNGCHPGALRILNRHPASRLVYVSCNPEALGR 356

Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRKP 366
           DL+ L+     IE +   D FP T H+E  V L   P
Sbjct: 357 DLATLTRGPWIIEDITPVDLFPQTYHVETVVTLKYDP 393


>gi|302023576|ref|ZP_07248787.1| RNA methyltransferase [Streptococcus suis 05HAS68]
          Length = 452

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L  A+    V  VE+ + +V  ++ N A N ++NV  V  S++   Q 
Sbjct: 308 VIDAYSGIGTIGLSFAKQVKHVYGVEVVERAVLDSQKNAARNGIDNVTYVCDSAESAMQK 367

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCR 330
              +              +   IFVDPPR GL ++ +       P  I+YISCN  ++ R
Sbjct: 368 WVAD------------GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMAR 415

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           D+ +     + + ++   D FP T H+E   LL ++
Sbjct: 416 DIKLYEELGYKLTKVQPADLFPNTHHIEVVGLLEKR 451


>gi|256375660|ref|YP_003099320.1| deoxyribonuclease/rho motif-related TRAM [Actinosynnema mirum DSM
           43827]
 gi|255919963|gb|ACU35474.1| deoxyribonuclease/rho motif-related TRAM [Actinosynnema mirum DSM
           43827]
          Length = 411

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G F+ VLA       +VE+ + +  A R    A  + ++  V+        ++ 
Sbjct: 268 DLYGGAGLFASVLAAQVGETGSVEVVESATNAVRDGQRA--LADLPQVKWHVGRVEDSVT 325

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332
           R    +R   +         + +DPPR G   A +  V A     ++Y++C+P +L RD+
Sbjct: 326 RAPFTDRSPSV---------VVLDPPRKGAGAAVLDAVAARRPARVVYVACDPAALARDV 376

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           ++L+   + + +L  FD FP T H+EC  L  R
Sbjct: 377 ALLAGHGYRLAQLRAFDAFPMTHHVECVALFTR 409


>gi|290579884|ref|YP_003484276.1| putative RNA methyltransferase [Streptococcus mutans NN2025]
 gi|254996783|dbj|BAH87384.1| putative RNA methyltransferase [Streptococcus mutans NN2025]
          Length = 459

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G+  L  A     V  ++I   ++  A+ N            RM        
Sbjct: 309 LIDAYCGVGSIGLAFANKVKSVRGMDIIPEAITDAKRNAE----------RMGYTNTYYE 358

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           M +    N +       Y+   + VDPPR+GLD+  +  +  Y    ++YISCN  +L R
Sbjct: 359 MGKAE--NIIPKWYKDGYQASALIVDPPRTGLDEKLLKTLLTYQPEKMVYISCNVSTLAR 416

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L   + +  +   D FP+T   E  V LV++
Sbjct: 417 DLVQLVKIYEVNYIQSVDMFPHTARTEAVVKLVKR 451


>gi|319408217|emb|CBI81870.1| putative enzyme [Bartonella schoenbuchensis R1]
          Length = 414

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 19/158 (12%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI--AANHVNNVKIVRMSSKEFTQ 271
           ++L+ G G F+L +A+  + V AVE    + E A  N+  AA     +K V    ++   
Sbjct: 269 VDLFSGAGTFTLRMAKTMN-VHAVE----NDETALANLEHAARFAFGLKTVTCEKRDL-- 321

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330
             RR      L+       RF ++  DPPR+G  +    + +   P ++ +SCNP +  R
Sbjct: 322 -FRRPLSAKELE-------RFDSVVFDPPRAGAKEQVCELAKTTIPRVVAVSCNPVTFAR 373

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DLSIL +  +T+E++   DQF ++ H+E   +L ++ +
Sbjct: 374 DLSILVAGGYTVEKVIPIDQFLWSPHVEVVAILSKRKT 411


>gi|239787374|emb|CAX83850.1| SAM-dependent methyltransferase related to tRNA
           (Uracil-5-)-methyltransferase [uncultured bacterium]
          Length = 437

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 21/181 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F QP+      +   V+A   G+ G + +LY G G+FSL LA     V AV+        
Sbjct: 266 FLQPSREGEAAITAQVMAGLAGLDGPVADLYAGVGSFSLPLAACHP-VHAVD-------- 316

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA-MRREREFNRLKDIDIHSY-RFKTIFVDPPRSGL 304
                   H   V  ++ +        +  ER     + + +H   +F  + +DPPR+G 
Sbjct: 317 -------GHAQAVAALKQAGDRIALGRLTTERRDLSKRPLLVHELKKFSGVVIDPPRAGA 369

Query: 305 DD--ATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
            +    + M       + +SCNP ++ RDLSIL +    ++ +   DQF +T H+E   +
Sbjct: 370 REQVTELAMAATVQKTVMVSCNPATMARDLSILINKGWRLDSVVPIDQFLWTPHLELTAI 429

Query: 362 L 362
           L
Sbjct: 430 L 430


>gi|253998673|ref|YP_003050736.1| 23S rRNA 5-methyluridine methyltransferase [Methylovorus sp.
           SIP3-4]
 gi|253985352|gb|ACT50209.1| RNA methyltransferase, TrmA family [Methylovorus sp. SIP3-4]
          Length = 457

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 83/204 (40%), Gaps = 40/204 (19%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L Y      FTQ N  IN  ML   +        D + + +CG GNF+L +AR    VL 
Sbjct: 258 LTYPFKPTEFTQVNPHINRVMLRRAMQLLGAQPQDRIADFFCGLGNFTLPIARSGATVLG 317

Query: 237 VE----IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR- 291
           +E    +   +VE+A  N  A+ V                  RE +  ++    + S   
Sbjct: 318 MEGSAALVARAVESASLNGLADQVE----------------YREADLFKMTPEALQSLGY 361

Query: 292 FKTIFVDPPRSG-------LDDATVGMVQAYP---------HILYISCNPDSLCRDLSIL 335
           F    +DPPR G       L D   G   A P          I+Y+SCNP +L RD  +L
Sbjct: 362 FDKWLIDPPRDGALELIKSLADVGRGEDGAMPVAPKVAGPERIVYVSCNPATLARDAGVL 421

Query: 336 STTHTIERLA--LFDQFPYTRHME 357
                   LA  + + FP+T H+E
Sbjct: 422 VNLKGYRLLAAGVINMFPHTSHVE 445


>gi|239918636|ref|YP_002958194.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Micrococcus luteus
           NCTC 2665]
 gi|281415146|ref|ZP_06246888.1| 23S rRNA methyluridine methyltransferase [Micrococcus luteus NCTC
           2665]
 gi|239839843|gb|ACS31640.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Micrococcus luteus
           NCTC 2665]
          Length = 403

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 24/254 (9%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--- 185
           DA R     L D L AR     ++  AN     +     D+ + +AG   +  ++     
Sbjct: 157 DALRAAVPGLLDDLAARGTPAAVV-SANLLPEHVALPEGDKEIVLAGGPTLTMRLNGVGL 215

Query: 186 -----SFTQPNAGI--NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                 F Q N  +   ++       A  G+     +LYCG G F+  LAR   R +   
Sbjct: 216 RLRPQGFFQTNTAVTEGLYATAAAWVAEAGLPATAWDLYCGVGGFAFHLARAGVRDV-WG 274

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-----RFK 293
           +   +   A     A  +      R S+ + T A+     F + +  +  S+     R  
Sbjct: 275 MESSAEAVAAARETAAELGLADRARFSAGDATSAL----SFGKRRAPEALSFEKRRARPD 330

Query: 294 TIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+       ++    P +LY SCNP +L +DL+ + + + + R+ +FD FP
Sbjct: 331 AVVVNPPRRGIGAELADALEDSGVPTVLYSSCNPATLAQDLARMPS-YRVARVQVFDMFP 389

Query: 352 YTRHMECGVLLVRK 365
            TRH E   LL R+
Sbjct: 390 QTRHAEVLTLLTRR 403


>gi|163856855|ref|YP_001631153.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella petrii DSM
           12804]
 gi|163260583|emb|CAP42885.1| RNA methyltransferase [Bordetella petrii]
          Length = 458

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 29/206 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G ++ YR  +  FTQ N  IN  M+   L        D + +L+CG GNF+L LA     
Sbjct: 252 GLSMPYRPTD--FTQVNHAINRAMVSRALMLLDVQPEDRVADLFCGLGNFTLPLATRGRE 309

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-- 291
            + VE +K   +  R   AA+        R ++               L ++D+   R  
Sbjct: 310 AVGVEGSKALTD--RALAAADRHGLAGRTRFATLN-------------LFEVDVDWLRGL 354

Query: 292 --FKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIE 342
             F  + +DPPR G       +    P      I+Y+SCNP +L RD +I+     + ++
Sbjct: 355 GYFDRMLIDPPREGAQAVAQALALLGPDERPRRIVYVSCNPATLARDAAIMVHEGGYVLK 414

Query: 343 RLALFDQFPYTRHMECGVLLVRKPSG 368
              + + FP+T H+E   +    P+G
Sbjct: 415 SAGVINMFPHTGHVESIAVFESLPAG 440


>gi|254459850|ref|ZP_05073266.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacterales bacterium
           HTCC2083]
 gi|206676439|gb|EDZ40926.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 408

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 25/199 (12%)

Query: 176 RTLIYRQIENSFTQPNAGI----NVH----MLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           R L Y+    +   P  G      VH    +   VL A  G +G  ++L+ G+G F+L L
Sbjct: 220 RNLPYQNFGAARVAPPPGAFLQATVHGQDALTAAVLDAVSGEKG--VDLFAGSGTFTLPL 277

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A H++ ++A+E  KP + A   +        +K V   +++     RR    + L  +D 
Sbjct: 278 AEHYE-MIALEGEKPMIAA--LDRGWREAKGLKKVDAIARDL---FRRPFLPDELAKLDF 331

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
                    +DPPR+G +     + ++    I Y+SCNP +  RD ++L     T+E   
Sbjct: 332 -------AVLDPPRAGAEAQVAELAKSEIAQIAYVSCNPVTFARDANVLIKAGFTLEWAQ 384

Query: 346 LFDQFPYTRHMECGVLLVR 364
           + DQF ++ H+E      R
Sbjct: 385 VVDQFRWSSHVELAAKFAR 403


>gi|148543331|ref|YP_001270701.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184152739|ref|YP_001841080.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227364399|ref|ZP_03848491.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325683598|ref|ZP_08163114.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           MM4-1A]
 gi|148530365|gb|ABQ82364.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus reuteri DSM
           20016]
 gi|183224083|dbj|BAG24600.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227070585|gb|EEI08916.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324977948|gb|EGC14899.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           MM4-1A]
          Length = 468

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 18/164 (10%)

Query: 205 ATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A+K ++ D    L++ Y G G   L LA     V  +EI   +V  A  N   N++ N K
Sbjct: 309 ASKALELDQDDTLIDAYAGIGTIGLSLASRVKAVRGMEIIPEAVADANENAKLNNITNAK 368

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HI 318
                ++E     ++E               F  + VDPPR+GLDD  +  + +  P   
Sbjct: 369 YEVGKAEEVLPRWQKE------------GLNFDALVVDPPRTGLDDQLIKQILKVKPRKF 416

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            Y+SC   SL R+L  L++ + ++ +   D  P T   E  V L
Sbjct: 417 AYVSCGMASLARNLRRLTSVYHVDYIQPIDMMPQTARCEAVVKL 460


>gi|328955342|ref|YP_004372675.1| 23S rRNA m(5)U-1939 methyltransferase [Coriobacterium glomerans
           PW2]
 gi|328455666|gb|AEB06860.1| 23S rRNA m(5)U-1939 methyltransferase [Coriobacterium glomerans
           PW2]
          Length = 438

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 21/148 (14%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++LY G G F+L LA     V AVE   P+V   R N+     +NV+++   +       
Sbjct: 299 IDLYSGAGTFTLPLASRCAGVAAVESFGPAVRDLRRNLERARADNVEVIGGDAV------ 352

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
              REF   +D D+       + VDPPR+GL    + ++   +   + Y+SC+P +L RD
Sbjct: 353 ---REFPD-QDADV-------LLVDPPRAGLAAEAITLIGQTSARDVAYVSCDPATLARD 401

Query: 332 LSILSTTHTIERLAL--FDQFPYTRHME 357
           L+          +A+   D FP T H E
Sbjct: 402 LARFERDGVFRPVAVTAVDLFPQTFHCE 429


>gi|323357043|ref|YP_004223439.1| SAM-dependent methyltransferase [Microbacterium testaceum StLB037]
 gi|323273414|dbj|BAJ73559.1| SAM-dependent methyltransferase [Microbacterium testaceum StLB037]
          Length = 417

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 22/174 (12%)

Query: 203 LAATKGI--QGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIA---AN 254
           L A  G+  +G  L+LY G G F+  LA+      RV++VE    + E A  N+A     
Sbjct: 254 LTAVGGVDPEGLHLDLYGGVGLFAATLAQLGGSSTRVVSVESDPRATEHAGENLAEWIGA 313

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQ 313
                +  R  +K    A  RERE  RL            + +DPPR+G     V G+  
Sbjct: 314 RAETARADRFVAKLAADASERERE--RLA--------RGVVLLDPPRAGAGREVVEGIAA 363

Query: 314 AYPH-ILYISCNPDSLCRDLSILSTTHTIERLAL--FDQFPYTRHMECGVLLVR 364
             P  + Y++C+P +L RDL+I +    + R  +   D FP+T H+E  V+L R
Sbjct: 364 LSPATVAYVACDPVALSRDLAIFAEHGYVARDGIHGVDLFPHTHHVEAVVVLQR 417


>gi|302768729|ref|XP_002967784.1| hypothetical protein SELMODRAFT_440228 [Selaginella moellendorffii]
 gi|300164522|gb|EFJ31131.1| hypothetical protein SELMODRAFT_440228 [Selaginella moellendorffii]
          Length = 650

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           EW   A  G    L ++ CG G   L LAR    V+ +EI   +V  A  N   N ++N 
Sbjct: 429 EW---AGLGPNTLLFDICCGTGTIGLTLARKVGMVVGIEINADAVTDALTNAKLNDISNC 485

Query: 260 KIVRMSSKEFTQAMRREREF-------NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           + V   +++    +  E E        +   D D   +    + VDPPRSGL       +
Sbjct: 486 RFVCAKAEDVVNKLLNEYEVLPEESSEDNAMDTDKKRFSNVVVIVDPPRSGLHPTVTKAL 545

Query: 313 QAYP---HILYISCNPDSL 328
           + +     ++Y+SCNPD+L
Sbjct: 546 RVHSRLKRLVYVSCNPDTL 564


>gi|313200748|ref|YP_004039406.1| TrmA family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312440064|gb|ADQ84170.1| RNA methyltransferase, TrmA family [Methylovorus sp. MP688]
          Length = 454

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 85/206 (41%), Gaps = 44/206 (21%)

Query: 178 LIYRQIENSFTQPNAGINVHMLE---WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
           L Y      FTQ N  IN  ML     +L A    Q  + + +CG GNF+L +AR    V
Sbjct: 255 LTYPFKPTEFTQVNPHINRVMLRRAMQLLGAQP--QDRIADFFCGLGNFTLPIARSGATV 312

Query: 235 LAVE----IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           L +E    +   +VE+A  N  A+ V                  RE +  ++    + S 
Sbjct: 313 LGMEGSAALVARAVESASLNGLADQVE----------------YREADLFKMTPEALQSL 356

Query: 291 R-FKTIFVDPPRSG-------LDDATVGMVQAYP---------HILYISCNPDSLCRDLS 333
             F    +DPPR G       L D   G   A P          I+Y+SCNP +L RD  
Sbjct: 357 GYFDKWLIDPPRDGALELIKSLADVGRGEDGAMPVAPKVAGPERIVYVSCNPATLARDAG 416

Query: 334 ILSTTHTIERLA--LFDQFPYTRHME 357
           +L        LA  + + FP+T H+E
Sbjct: 417 VLVNLKGYRLLAAGVINMFPHTSHVE 442


>gi|241759288|ref|ZP_04757394.1| 23S rRNA-methyltransferase [Neisseria flavescens SK114]
 gi|241320424|gb|EER56721.1| 23S rRNA-methyltransferase [Neisseria flavescens SK114]
          Length = 441

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 23/181 (12%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ NA +N  M+   +      +G+ + +L+CG GNFS+ LA+    V+ +E A   
Sbjct: 269 GDFTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSVPLAKSGASVVGIEGADYL 328

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID---IHSY-RFKTIFVDP 299
           V+ AR N   N           +  F+ A         L D D   + S+ RF  + +DP
Sbjct: 329 VDRARENARLNRC-------AENMTFSVA--------DLFDTDEKTVESWGRFDKMLLDP 373

Query: 300 PRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           PR+G       + + +    I+Y+SCNP +  RD  +L    +  +   + + F  T H+
Sbjct: 374 PRNGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMNMFAQTSHV 433

Query: 357 E 357
           E
Sbjct: 434 E 434


>gi|147669587|ref|YP_001214405.1| (Uracil-5)-methyltransferase [Dehalococcoides sp. BAV1]
 gi|289432847|ref|YP_003462720.1| (uracil-5)-methyltransferase [Dehalococcoides sp. GT]
 gi|146270535|gb|ABQ17527.1| (Uracil-5)-methyltransferase [Dehalococcoides sp. BAV1]
 gi|288946567|gb|ADC74264.1| (Uracil-5)-methyltransferase [Dehalococcoides sp. GT]
          Length = 393

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 20/156 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G F+++L+    RV+A+E +  +V+ A  NI+   ++N+++++  +++    
Sbjct: 254 LVDAYAGVGTFAVLLSPDCKRVIAIEESAAAVKDACLNISG--IDNIELIQSKTEDV--- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                       I+    +   + +DP RSG   + +  +   P  +++Y++C+P SL R
Sbjct: 309 ------------INQFEGQMDALILDPSRSGAHPSVLATICQNPPRNLVYVACDPSSLAR 356

Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL I L+    +  +   D FP T H+E   LL  K
Sbjct: 357 DLKILLAGPFELSSVIPVDMFPQTYHVETLALLKCK 392


>gi|254510029|ref|ZP_05122096.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacteraceae bacterium
           KLH11]
 gi|221533740|gb|EEE36728.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacteraceae bacterium
           KLH11]
          Length = 409

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q        +L+ V  A +G +  +++L+ G G FSL LA   + V AVE      
Sbjct: 238 GAFLQATKDGEQALLKAVFEAVRGAK-HVVDLFAGCGTFSLPLAETAE-VHAVE-----G 290

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           EA             + ++  + E     RR    + LK        F  + +DPPR+G 
Sbjct: 291 EAEMTQALDQGWRKAQGLKQITTEARDLFRRPLMPDELK-------AFDAVVLDPPRAGA 343

Query: 305 DDATVGMVQAYPHIL-YISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
           +     + QA+P ++ Y+SCNP +  RD  ++++  +T+E + + DQF ++ H E
Sbjct: 344 EAQVAELAQAHPPVIAYVSCNPVTFARDAKTLVNAGYTLEWVQVVDQFRWSSHTE 398


>gi|207743450|ref|YP_002259842.1| rna methyltransferase protein [Ralstonia solanacearum IPO1609]
 gi|206594847|emb|CAQ61774.1| rna methyltransferase protein [Ralstonia solanacearum IPO1609]
          Length = 448

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 27/197 (13%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++  VL       GD LL+L+CG GNF+L +A     
Sbjct: 257 GITMPFKPTD--FTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGRE 314

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E ++     A  N   N ++          + T A R   E +   DI     RF 
Sbjct: 315 VMGIEGSETLTTRALANAQHNGLD---------AKTTFACRNLFEVS-ADDIAALG-RFD 363

Query: 294 TIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTHT 340
              VDPPR G    +  + +               I+Y+SCNP +L RD  +L     + 
Sbjct: 364 RWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 423

Query: 341 IERLALFDQFPYTRHME 357
           +    + + FP+T H+E
Sbjct: 424 LSGAGVVNMFPHTSHVE 440


>gi|227543796|ref|ZP_03973845.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300908864|ref|ZP_07126327.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           SD2112]
 gi|227186223|gb|EEI66294.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300894271|gb|EFK87629.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           SD2112]
          Length = 468

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 18/164 (10%)

Query: 205 ATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A+K ++ D    L++ Y G G   L LA     V  +EI   +V  A  N   N++ N K
Sbjct: 309 ASKALELDKDDTLIDAYAGIGTIGLSLASRVKSVCGMEIIPEAVADANENAKLNNITNAK 368

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HI 318
                ++E     + E               F  + VDPPR+GLDD  +  + +  P   
Sbjct: 369 YEVGKAEEVLPRWQEE------------GLNFDALVVDPPRTGLDDQLIKQILKVKPRKF 416

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            Y+SC   SL R+L  L++ + ++ +   D  P T   E  V L
Sbjct: 417 AYVSCGMASLARNLRRLTSVYHVDYIQPIDMMPQTARCEAVVKL 460


>gi|73748826|ref|YP_308065.1| RNA methyltransferase [Dehalococcoides sp. CBDB1]
 gi|73660542|emb|CAI83149.1| RNA methyltransferase, TrmA family [Dehalococcoides sp. CBDB1]
          Length = 393

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 20/156 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G F+++L+    RV+A+E +  +V+ A  NI+   ++N+++++  +++    
Sbjct: 254 LVDAYAGVGTFAVLLSPDCKRVIAIEESAAAVKDACLNISG--IDNIELIQSKTEDV--- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                       I+    +   + +DP RSG   + +  +   P  +++Y++C+P SL R
Sbjct: 309 ------------INQFEGQMDALILDPSRSGAHPSVLATICQNPPRNLVYVACDPSSLAR 356

Query: 331 DLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL I L+    +  +   D FP T H+E   LL  K
Sbjct: 357 DLKILLAGPFELSSVIPVDMFPQTYHVETLALLKCK 392


>gi|184201679|ref|YP_001855886.1| 23S rRNA methyluridine methyltransferase [Kocuria rhizophila
           DC2201]
 gi|183581909|dbj|BAG30380.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Kocuria
           rhizophila DC2201]
          Length = 378

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 30/190 (15%)

Query: 186 SFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           SF Q N  +   +     +WV A        + +LYCG G F+L +A     V+  EI++
Sbjct: 207 SFFQTNTAVTEQLYRQVADWVDAVGPA---SVWDLYCGVGGFALHVAGPGREVVGTEISE 263

Query: 242 PSVEAAR-----YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            +V +A+       +  +   +V+ +   +      +    E                  
Sbjct: 264 EAVASAQDTARAMGLPQDGPGSVRFLADDAAATPADLPGTPELA---------------V 308

Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
           V+PPR GLD +    +++    H +Y SCN  +L RDL+ + +   +E   L D FP+T 
Sbjct: 309 VNPPRRGLDASLCAWLESSSVRHAVYSSCNAQTLARDLARMPSLRPVE-ARLLDMFPHTG 367

Query: 355 HMECGVLLVR 364
           H E  VLL R
Sbjct: 368 HYEVAVLLRR 377


>gi|116629999|ref|YP_815171.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           gasseri ATCC 33323]
 gi|238853814|ref|ZP_04644180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           202-4]
 gi|311110369|ref|ZP_07711766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           MV-22]
 gi|116095581|gb|ABJ60733.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus gasseri ATCC
           33323]
 gi|238833623|gb|EEQ25894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           202-4]
 gi|311065523|gb|EFQ45863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           MV-22]
          Length = 462

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++    
Sbjct: 314 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKLLPE 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           ++     N+   ID        + VDPPR+GL    +  +++  P   +Y+SCNP +L +
Sbjct: 374 LK-----NQGVPID-------ALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 422 DLVLLSEAYDVRVIQPVDMMPQTPRWEGVTKLV 454


>gi|204929928|ref|ZP_03220949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204320922|gb|EDZ06123.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 375

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELRLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|158319641|ref|YP_001512148.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158139840|gb|ABW18152.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs]
          Length = 452

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++YCG G  SL LA+    V  +EI   ++E AR N   NH+ N K     +++    
Sbjct: 307 VFDIYCGIGTISLFLAKKAKEVHGIEIIDAAIEDARENARINHLTNTKFYVGKAEDVVPK 366

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           + +                   + VDPPR G +++ +  +   A   ++Y+SCNP +L R
Sbjct: 367 LYKS------------GLVADVVVVDPPRKGCEESVLETIVNMAPKRVVYVSCNPATLAR 414

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           DL+ L      T+E +   D F ++ H+EC V L R
Sbjct: 415 DLAYLDEKGYKTVE-VQPVDMFSHSSHVECCVSLER 449


>gi|47097757|ref|ZP_00235248.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
           1/2a F6854]
 gi|47013868|gb|EAL04910.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
           1/2a F6854]
          Length = 351

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 16/127 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV      +++    
Sbjct: 238 LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 297

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
             +E             +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 298 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 344

Query: 330 RDLSILS 336
           RDL++L+
Sbjct: 345 RDLALLA 351


>gi|321263230|ref|XP_003196333.1| tRNA methyltransferase [Cryptococcus gattii WM276]
 gi|317462809|gb|ADV24546.1| tRNA methyltransferase, putative [Cryptococcus gattii WM276]
          Length = 612

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 30/171 (17%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G F + L+  F  V  VEI+  S+EAA+ N   N + + K   +  K     
Sbjct: 446 LVDTYCGSGLFGVTLSPSFTAVAGVEISSISIEAAKRNAEMNGLKD-KTTWLCGKA---- 500

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-P-HILYISCNPDSLCR 330
              E  F  L +    + R   + VDPPR G D   +  +  + P  I+Y+SCN  +  R
Sbjct: 501 ---EDIFGGLAEQGF-AGRHSCVVVDPPRKGCDTPFLDQLLNFRPLTIVYVSCNVHTQAR 556

Query: 331 DLSIL-------------------STTHTIERLALFDQFPYTRHMECGVLL 362
           D+  L                      + +E L  FD FP T H+E   +L
Sbjct: 557 DVGYLVHESNKRGQASQGKEEAMKGWKYIVESLRGFDLFPQTAHVESVAVL 607


>gi|300361238|ref|ZP_07057415.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri
           JV-V03]
 gi|300353857|gb|EFJ69728.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri
           JV-V03]
          Length = 459

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++    
Sbjct: 314 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKLLPE 373

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           ++     N+   ID        + VDPPR+GL    +  +++  P   +Y+SCNP +L +
Sbjct: 374 LK-----NQGVPID-------ALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 422 DLVLLSEAYDVRVIQPVDMMPQTPRWEGVTKLV 454


>gi|229829260|ref|ZP_04455329.1| hypothetical protein GCWU000342_01347 [Shuttleworthia satelles DSM
           14600]
 gi|229792423|gb|EEP28537.1| hypothetical protein GCWU000342_01347 [Shuttleworthia satelles DSM
           14600]
          Length = 532

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 76/158 (48%), Gaps = 18/158 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + +LA     V+ VEI + +V AAR N   N ++N + +          
Sbjct: 390 VFDLYSGTGTIAQILAPAAGHVIGVEIVEEAVAAARANAKKNGLDNCEFI---------- 439

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                  + LK ID    +   I +DPPR G+    +  +  Y    ++YISC P SL R
Sbjct: 440 -----AGDVLKVIDDIEDKPDFIVLDPPRDGIHPKALDKIIDYGVESMIYISCKPTSLVR 494

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL IL +  + + R+   D FP T H+EC  L+ R  S
Sbjct: 495 DLEILMARGYEVRRMRGVDMFPATGHVECIALIQRVKS 532


>gi|187608197|ref|NP_001120451.1| TRM2 tRNA methyltransferase 2 homolog A [Xenopus (Silurana)
           tropicalis]
 gi|170285270|gb|AAI61232.1| LOC100145545 protein [Xenopus (Silurana) tropicalis]
          Length = 613

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 29/167 (17%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   + LA+   +V+ +E+ + ++  A+ N   N+++NV        EF + 
Sbjct: 441 VLDVCCGTGTIGISLAKKVKKVVGIELCQEAIADAKANAQLNNLDNV--------EF-RC 491

Query: 273 MRREREFNRLKDIDIHSYRFKT--IFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS 327
            + E  F  L    I+S+ F +    VDPPR+GL    +  ++   H   ++Y+SCNP +
Sbjct: 492 GKAEDIFPTL----IYSFTFPSPLAIVDPPRAGLHSKVIIAIRKAEHLKQLIYVSCNPKA 547

Query: 328 -------LCRDLSILSTT---HTIERLALFDQFPYTRHMECGVLLVR 364
                  LCR  S          I+ LA+ D FP T H E  +L  R
Sbjct: 548 AMNNFIDLCRAPSNRVKGRPFRPIKALAV-DLFPQTPHFELVILFER 593


>gi|322616357|gb|EFY13266.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619607|gb|EFY16482.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622697|gb|EFY19542.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628609|gb|EFY25396.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631546|gb|EFY28302.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637073|gb|EFY33776.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641728|gb|EFY38364.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644479|gb|EFY41019.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650060|gb|EFY46477.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654147|gb|EFY50470.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658062|gb|EFY54329.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663536|gb|EFY59738.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670272|gb|EFY66412.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671508|gb|EFY67630.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676864|gb|EFY72931.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682789|gb|EFY78808.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686468|gb|EFY82450.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323196078|gb|EFZ81241.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196776|gb|EFZ81920.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202945|gb|EFZ87979.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208985|gb|EFZ93922.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209696|gb|EFZ94623.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215178|gb|EFZ99923.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222381|gb|EGA06759.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227505|gb|EGA11665.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229856|gb|EGA13979.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233081|gb|EGA17177.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240816|gb|EGA24858.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243133|gb|EGA27153.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248675|gb|EGA32603.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251676|gb|EGA35543.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257336|gb|EGA41034.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261924|gb|EGA45490.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267940|gb|EGA51419.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271993|gb|EGA55408.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 375

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|269217160|ref|ZP_06161014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
           700122]
 gi|269129297|gb|EEZ60382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
           700122]
          Length = 376

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 24/191 (12%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD--- 232
           L +R    SF Q N+     +L        G+ G+  +L+ YCG G   LV A+  D   
Sbjct: 190 LSFRISSRSFYQVNSE-QTEVLYRTAVEMAGLTGEETILDAYCGTGTIGLVAAKGIDGKP 248

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               ++ VE    +V  AR N   N + + +     +  F   MRR         +    
Sbjct: 249 GAKHLIGVEERMDAVADARTNARHNGIGSAEFFSDDAGAF---MRR---------LAAEG 296

Query: 290 YRFKTIFVDPPRSGL--DDATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLAL 346
                +F+DPPR+G   D      + A   I+Y+SCNP +  RD   L    + ++ L  
Sbjct: 297 GSVDAVFMDPPRAGATPDFLKAACLLAPRRIVYVSCNPATQLRDARYLCDHGYRLDTLQP 356

Query: 347 FDQFPYTRHME 357
            D FP+T H+E
Sbjct: 357 VDMFPHTEHVE 367


>gi|313896553|ref|ZP_07830102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974738|gb|EFR40204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 457

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 21/152 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  +L LA+    V  +EI +P++  AR N   N + N + +   +     +
Sbjct: 312 VIDAYCGTGTITLFLAQRAWNVYGIEIVRPAILDARKNACDNGIKNAEFIVGDTTAVMPS 371

Query: 273 MRRE-----REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327
           + R+                     KT     PR                I+Y+SCNP +
Sbjct: 372 LYRQGVRPDVVVVDPPRAGCTPTVLKTFANMKPR---------------RIVYVSCNPAT 416

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMEC 358
           L RDL+I+ T  +    +   D FP T H+EC
Sbjct: 417 LARDLAIMKTLGYEAREIQPVDLFPQTSHVEC 448


>gi|197251768|ref|YP_002145836.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|226725410|sp|B5F101|RUMB_SALA4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|197215471|gb|ACH52868.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 375

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|300691812|ref|YP_003752807.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Ralstonia
           solanacearum PSI07]
 gi|299078872|emb|CBJ51533.2| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Ralstonia
           solanacearum PSI07]
          Length = 494

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 27/197 (13%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++  VL       GD LL+L+CG GNF+L +A     
Sbjct: 303 GITMPFKPTD--FTQVNHQINRVLMSRVLKLLDAQPGDRLLDLFCGIGNFTLPMATRGRE 360

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E ++     A  N   N ++          + T A R    F    D      RF 
Sbjct: 361 VMGIEGSETLTTRALANAQHNGLD---------AKTTFACR--NLFEVTADDIAELGRFD 409

Query: 294 TIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTHT 340
              VDPPR G    +  + +               I+Y+SCNP +L RD  +L     + 
Sbjct: 410 RWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 469

Query: 341 IERLALFDQFPYTRHME 357
           +    + + FP+T H+E
Sbjct: 470 LAGAGVVNMFPHTSHVE 486


>gi|168819955|ref|ZP_02831955.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205343011|gb|EDZ29775.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320085157|emb|CBY94944.1| putative enzyme [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 375

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|207723158|ref|YP_002253557.1| rna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206588352|emb|CAQ35315.1| rna methyltransferase protein [Ralstonia solanacearum MolK2]
          Length = 482

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 27/197 (13%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++  VL       GD LL+L+CG GNF+L +A     
Sbjct: 291 GITMPFKPTD--FTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGRE 348

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E ++     A  N   N ++          + T A R   E +   DI     RF 
Sbjct: 349 VMGIEGSETLTTRALANAQHNGLD---------AKTTFACRNLFEVS-ADDIAALG-RFD 397

Query: 294 TIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTHT 340
              VDPPR G    +  + +               I+Y+SCNP +L RD  +L     + 
Sbjct: 398 RWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 457

Query: 341 IERLALFDQFPYTRHME 357
           +    + + FP+T H+E
Sbjct: 458 LSGAGVVNMFPHTSHVE 474


>gi|168230788|ref|ZP_02655846.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471664|ref|ZP_03077648.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458028|gb|EDX46867.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205334770|gb|EDZ21534.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 375

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|268319868|ref|YP_003293524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           johnsonii FI9785]
 gi|262398243|emb|CAX67257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           johnsonii FI9785]
          Length = 459

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++    
Sbjct: 314 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL--- 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                    L ++         + VDPPR+GL    +  +++  P   +Y+SCNP +L +
Sbjct: 371 ---------LPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 422 DLVLLSEAYDVRVIQPVDMMPQTPRWEGVTKLV 454


>gi|168263599|ref|ZP_02685572.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205347794|gb|EDZ34425.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 375

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|167587043|ref|ZP_02379431.1| RNA methyltransferase, TrmA family protein [Burkholderia ubonensis
           Bu]
          Length = 451

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 273 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAREVMGIEGSETLTT 332

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R    F    D DI +   F    +DPPR G 
Sbjct: 333 RALANARENGVDG---------HTTFACR--NLFEVTAD-DIRALGAFDKFLIDPPREGA 380

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   D A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T 
Sbjct: 381 LAVSKALADIAQSGEGPLPRRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTS 440

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 441 HVESIALFER 450


>gi|198242601|ref|YP_002214847.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|226725411|sp|B5FPZ6|RUMB_SALDC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|197937117|gb|ACH74450.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326622600|gb|EGE28945.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 375

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|313680187|ref|YP_004057926.1| 23S rRNA m(5)u-1939 methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313152902|gb|ADR36753.1| 23S rRNA m(5)U-1939 methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 427

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 20/154 (12%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G     LELY G+G     LA+ + RV   ++ + S+E  R + A   + NV+  R  ++
Sbjct: 283 GTGESALELYGGSGVLGFFLAQGYARVTVTDLNRRSIEKGRADAARLGLANVRFARADAR 342

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNP 325
           E  +    E                  + VDPPRSGL   T+  +V+  P  I+Y++C+P
Sbjct: 343 EAARFGPAE-----------------LVAVDPPRSGLARETLAALVELKPEKIIYVACDP 385

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            +  RD++ L+   + +E +  +D FPYT H+E 
Sbjct: 386 ATWARDVARLAERGYRLEFVRPYDFFPYTHHVEV 419


>gi|241766451|ref|ZP_04764323.1| RNA methyltransferase, TrmA family [Acidovorax delafieldii 2AN]
 gi|241363348|gb|EER58868.1| RNA methyltransferase, TrmA family [Acidovorax delafieldii 2AN]
          Length = 487

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 165 DYVDERLTVA----GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
           D   E+L+ A    G T+ ++  +  FTQ N  IN  ++   L      + + +++ +CG
Sbjct: 264 DEGGEQLSYALPDFGITMPFKPTD--FTQVNPHINRVLVSRALRLLDVQKSERVIDWFCG 321

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            GNF+L LA     VL +E ++  V  +R N A N         +++ EF         F
Sbjct: 322 LGNFTLPLATQAREVLGIEGSEALVARSRENYAINQAAAQGQRPLAATEFVA----RNLF 377

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSG----------LDDATVGMVQAYP------------H 317
               ++ +         VDPPR G          ++ A +G   A P             
Sbjct: 378 EMTPEMLVADGAADKWLVDPPREGAFALAKALADIEQARIGAEGADPLPAGAEGWTPPQR 437

Query: 318 ILYISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHME 357
           I+Y+SCNP +L RD  +L     +      + + FP+T H+E
Sbjct: 438 IVYVSCNPATLARDAGLLVHLAGYKCTAAGMVNMFPHTAHVE 479


>gi|213428046|ref|ZP_03360796.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 375

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCAAPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|200391026|ref|ZP_03217637.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199603471|gb|EDZ02017.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 375

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|78184707|ref|YP_377142.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. CC9902]
 gi|78169001|gb|ABB26098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CC9902]
          Length = 469

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 22/181 (12%)

Query: 190 PNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           P A   VH+L +W+   T+  +G +++ YCG G  SL LA     V+ +E+ + SV+ A 
Sbjct: 298 PQAERIVHVLCDWL--KTELGEGTVVDAYCGIGTISLPLAAQGFEVIGLELHQGSVDQAL 355

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   N+++  K  R  + +    +                +    + +DPPR GLD   
Sbjct: 356 LNAMRNNLS--KGCRFRAGDVVDLLESAL------------FGADALVLDPPRRGLDARV 401

Query: 309 VGMVQAYP--HILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLV 363
           +  +   P   + Y+SC+P +  RDL +L   +  + +++    D FP T H+E   LL 
Sbjct: 402 IQTILDNPPKRLAYLSCDPATQARDLKLLMQPAGPYRLKKHQPIDFFPQTTHLESLALLE 461

Query: 364 R 364
           R
Sbjct: 462 R 462


>gi|16759792|ref|NP_455409.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142435|ref|NP_805777.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052506|ref|ZP_03345384.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213583498|ref|ZP_03365324.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213611249|ref|ZP_03370075.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647857|ref|ZP_03377910.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855247|ref|ZP_03383487.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|20455397|sp|Q8Z841|RUMB_SALTI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|25322734|pir||AG0606 hypothetical RNA methyltransferase (EC 2.1.1.-) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502085|emb|CAD05321.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138065|gb|AAO69626.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 375

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|322504877|emb|CBZ14664.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 604

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 20/166 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+L  G G   L L++H  RV+ +E+ + +V  AR N   N + N +      +    +
Sbjct: 406 LLDLCSGTGTIGLTLSKHVRRVIGIELVESAVANARRNAQQNGIANAEFHCGRVEHLLPS 465

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLC 329
           +          DI         + +DPPR+G++   +  ++    I   +YISC   +L 
Sbjct: 466 VISGLPAEDRGDI--------VVILDPPRAGVNSTVLKWIRGMETIRRVVYISCEQKALE 517

Query: 330 RDLSILSTTHT-------IERLALF--DQFPYTRHMECGVLLVRKP 366
           RD   L+  +T        E  A F  D FP+T H+E   +L R+P
Sbjct: 518 RDCPRLTKPNTKAYRGNPFEVTAAFAVDLFPHTHHVEMIAVLTRRP 563


>gi|83747940|ref|ZP_00944971.1| 23S rRNA m(5)U 1939 methyltransferase [Ralstonia solanacearum
           UW551]
 gi|83725358|gb|EAP72505.1| 23S rRNA m(5)U 1939 methyltransferase [Ralstonia solanacearum
           UW551]
          Length = 502

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 27/197 (13%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++  VL       GD LL+L+CG GNF+L +A     
Sbjct: 311 GITMPFKPTD--FTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGRE 368

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E ++     A  N   N ++          + T A R   E +   DI     RF 
Sbjct: 369 VMGIEGSETLTTRALANAQHNGLD---------AKTTFACRNLFEVS-ADDIAALG-RFD 417

Query: 294 TIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTHT 340
              VDPPR G    +  + +               I+Y+SCNP +L RD  +L     + 
Sbjct: 418 RWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 477

Query: 341 IERLALFDQFPYTRHME 357
           +    + + FP+T H+E
Sbjct: 478 LSGAGVVNMFPHTSHVE 494


>gi|227889569|ref|ZP_04007374.1| possible tRNA (uracil-5-)-methyltransferase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849871|gb|EEJ59957.1| possible tRNA (uracil-5-)-methyltransferase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 459

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 15/156 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++    
Sbjct: 314 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL--- 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                    L ++         + VDPPR+GL    +  +++  P   +Y+SCNP +L +
Sbjct: 371 ---------LPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME-CGVLLVRK 365
           DL +LS  + +  +   D  P T   E    L++RK
Sbjct: 422 DLVLLSEAYDVRVIQPVDMMPQTPRWEGVAKLVLRK 457


>gi|225076548|ref|ZP_03719747.1| hypothetical protein NEIFLAOT_01596 [Neisseria flavescens
           NRL30031/H210]
 gi|224952119|gb|EEG33328.1| hypothetical protein NEIFLAOT_01596 [Neisseria flavescens
           NRL30031/H210]
          Length = 441

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 15/177 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ NA +N  M+   +      +G+ + +L+CG GNFSL LA+    V+ +E A   
Sbjct: 269 GDFTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGASVVGIEGADYL 328

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ AR N   N     + +  S  +          F+  + I     +F  + +DPPR+G
Sbjct: 329 VDRARENARLNRC--AENITFSVADL---------FDTDEKIVESWGQFDKMLLDPPRNG 377

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
                  + + +    I+Y+SCNP +  RD  +L    +  +   + + F  T H+E
Sbjct: 378 AYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMNMFAQTSHVE 434


>gi|42519480|ref|NP_965410.1| hypothetical protein LJ1606 [Lactobacillus johnsonii NCC 533]
 gi|51316713|sp|Q74IG2|Y1606_LACJO RecName: Full=Uncharacterized RNA methyltransferase LJ_1606
 gi|41583768|gb|AAS09376.1| hypothetical protein LJ_1606 [Lactobacillus johnsonii NCC 533]
          Length = 459

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++    
Sbjct: 314 LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL--- 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                    L ++         + VDPPR+GL    +  +++  P   +Y+SCNP +L +
Sbjct: 371 ---------LPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 422 DLVLLSDAYDVRVIQPVDMMPQTPRWEGVTKLV 454


>gi|110677801|ref|YP_680808.1| RNA methyltransferase, putative [Roseobacter denitrificans OCh 114]
 gi|109453917|gb|ABG30122.1| RNA methyltransferase, putative [Roseobacter denitrificans OCh 114]
          Length = 408

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 22/178 (12%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGI---QGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            +F Q  A    H    +LAA + I    G +++L+ G G F+L LAR  + V AVE   
Sbjct: 237 GAFLQATA----HGEAALLAAVRDITQDAGRIVDLFAGCGTFALPLARRCE-VHAVE--G 289

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
                A  +    H   +K V   +          R+  R   + +   R   + +DPPR
Sbjct: 290 DGDMTAALDAGWRHAQGLKNVTTET----------RDLFRRPLVPMELTRVDAVVLDPPR 339

Query: 302 SGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +G +   V + +A  P + Y+SCNP +  RD ++L +  + ++ + + DQF ++ H+E
Sbjct: 340 AGAEAQVVELAEAAVPRLAYVSCNPVTFARDAAVLCAAGYVLDWVQVVDQFRWSAHVE 397


>gi|254252252|ref|ZP_04945570.1| tRNA (uracil-5-)-methyltransferase [Burkholderia dolosa AUO158]
 gi|124894861|gb|EAY68741.1| tRNA (uracil-5-)-methyltransferase [Burkholderia dolosa AUO158]
          Length = 465

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 118/277 (42%), Gaps = 28/277 (10%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +R ++ QI+     S  A+V  +   +  +A  E  +R     H  ++ +Q  G    T 
Sbjct: 204 IRDRMPQIELAVGSSVTALVLRVLEPI--NAADEALLRAFADEHQVQFWLQPKGPDTVTP 261

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
                  +D  L   G  + ++  +  FTQ N  IN  ++   L      + D +L+L+C
Sbjct: 262 FYPLDVSLDYTLPEFGIRMPFKPTD--FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G GNF+L LAR    V+ +E ++     A  N   N V+            T A R    
Sbjct: 320 GIGNFTLPLARLAREVMGIEGSETLTTRALANARENGVDG---------HTTFACR--NL 368

Query: 279 FNRLKDIDIHSY-RFKTIFVDPPRSG---LDDATVGMVQAYP-----HILYISCNPDSLC 329
           F    D DI +   F    +DPPR G   +  A   + Q+        I+Y+SCNP +L 
Sbjct: 369 FEVTAD-DIRALGAFDKFLIDPPREGALAVSKALAEIAQSGEGPLPMRIVYVSCNPSTLA 427

Query: 330 RDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD  +L     + ++   + + FP+T H+E   L  R
Sbjct: 428 RDAGLLVHEAGYRLKGAGVVNMFPHTSHVESIALFER 464


>gi|332977504|gb|EGK14277.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter sp.
           1501(2011)]
          Length = 517

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 32/240 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKT--KICL-DRDYVDERLTVAGR--------TLIYRQIEN 185
           +L+    AR +Q+ L  +  ++   I L D D + E+    GR         L Y  I  
Sbjct: 280 KLKTFFKARSWQLYLQSKGPESIEHIALHDTDNLTEQF---GRLYYQLPEFDLTYEFIPT 336

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            FTQ N  +N  M +          G+ +L+L+ G GNFSL LAR        +     V
Sbjct: 337 DFTQVNLSVNRKMTKLACDLLDLKPGERVLDLFSGLGNFSLPLARLVGGEDGSQGLAIGV 396

Query: 245 EAARYNIAANHVNNVKIVRMSSKEF-TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           E +   + A   +N K   +++ EF  Q + ++       D       F  I +DPPRSG
Sbjct: 397 EGSDA-MTARAADNAKRNGITNTEFYNQDLTQD-----FSDQSWAQQGFDAILIDPPRSG 450

Query: 304 LDDATVGMVQAYPH-----ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
             +    ++Q  P      I+Y+SCNP +L RD  +++   + +    + D F +T H+E
Sbjct: 451 AWE----VMQYLPRFNASRIVYVSCNPATLARDTKALIEQGYRLTDAGVMDMFCHTGHVE 506


>gi|119504603|ref|ZP_01626682.1| hypothetical RNA methyltransferase [marine gamma proteobacterium
           HTCC2080]
 gi|119459625|gb|EAW40721.1| hypothetical RNA methyltransferase [marine gamma proteobacterium
           HTCC2080]
          Length = 391

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 19/183 (10%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           F Q N   N  M EW+  A   +  D  +LEL+ G+GNF+ VLA HF  V+AVE  + ++
Sbjct: 222 FRQGNTQQNAVMREWLAQAIASMPPDAPVLELFAGSGNFTEVLASHFKTVVAVEGDQQAL 281

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +    ++A   V     + + S    +A   E++  R+            + +DPPR GL
Sbjct: 282 QQL-SDVAPERV-QAHALNLFSVPAVEAWVNEKQGIRV------------LVLDPPREGL 327

Query: 305 DDAT--VGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
              T  +  +     ++Y++C+  +  RD    L+    + ++   D FP T H+E   +
Sbjct: 328 KVRTPFLKELAELETVIYVACDLATWARDCKDFLAQGFRLAQVTPLDLFPQTPHLEVLSV 387

Query: 362 LVR 364
           L R
Sbjct: 388 LTR 390


>gi|221195076|ref|ZP_03568132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC
           49626]
 gi|221184979|gb|EEE17370.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC
           49626]
          Length = 452

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 23/204 (11%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           DERL+ +G +  +   +++    +   N H       +  G    +L+ YCG G   +  
Sbjct: 246 DERLS-SGNSNCHTSRDDADFPSSGSSNCHTSRDRADSLSGCPLRILDAYCGTGTIGICA 304

Query: 228 ARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           A+          ++ V+  + ++  A+ N  AN V+   +   +++   Q  +R   ++ 
Sbjct: 305 AKEAGSRGIPVELIGVDQVENNIAMAKRNARANAVSARFVCDDATRFIAQEAKRGAPYD- 363

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STT 338
                        + +DPPR+G     +  V+  A   ++Y+SCN  +  RDL +L ++ 
Sbjct: 364 ------------VVVLDPPRAGSTPTFLKAVEQLAPKRVVYVSCNVVTQARDLEVLLASG 411

Query: 339 HTIERLALFDQFPYTRHMECGVLL 362
           +  ER+   D FP+T+H+E  VLL
Sbjct: 412 YKPERIVPVDMFPHTKHVETVVLL 435


>gi|307191668|gb|EFN75142.1| HpaII tiny fragments locus 9c protein [Harpegnathos saltator]
          Length = 576

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 25/165 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           LL++ CG G   L  ++H   VL +E+   +++ A+ N   N V N +  V  +    + 
Sbjct: 412 LLDVCCGTGTIGLCFSKHCGEVLGIEVIPDAIKDAKENAIKNGVTNCEFFVGKAEDILSP 471

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSL 328
            ++R    N             T  VDPPR+GL      T+  V+    ++YISC+P + 
Sbjct: 472 VIQRATRSNI------------TAVVDPPRAGLHQKALLTLRKVKKLSRLVYISCDPRAA 519

Query: 329 CRDLSILSTTHTIERLA---------LFDQFPYTRHMECGVLLVR 364
            ++L  L+   + + L            D FP+T+H E  + L R
Sbjct: 520 MKNLVDLARPSSKQYLGEPLVPVKAIAVDMFPHTKHCELILCLER 564


>gi|282851389|ref|ZP_06260754.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|282557357|gb|EFB62954.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
          Length = 226

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++    
Sbjct: 78  LIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKLLPE 137

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
           ++     N+   ID        + VDPPR+GL    +  +++  P   +Y+SCNP +L +
Sbjct: 138 LK-----NQGVPID-------ALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 185

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGV--LLVRK 365
           DL +LS  + +  +   D  P T   E GV  L++RK
Sbjct: 186 DLVLLSEAYDVRVIQPVDMMPQTPRWE-GVTKLVLRK 221


>gi|194467488|ref|ZP_03073475.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
 gi|194454524|gb|EDX43421.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
          Length = 467

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 18/164 (10%)

Query: 205 ATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A+K ++ D    L++ Y G G   L LA     V  +EI   +V  A  N   N++ N K
Sbjct: 309 ASKALELDKDDTLIDAYAGIGTIGLSLASRVKAVRGMEIIPEAVADANENAKLNNIANAK 368

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HI 318
                ++E     ++E               F  + VDPPR+GLDD  +  + +  P   
Sbjct: 369 YEVGKAEEVLPRWQKE------------GLNFDALVVDPPRTGLDDQLIKQILKVKPRKF 416

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            Y+SC   SL R+L  L++ + ++ +   D  P T   E  V L
Sbjct: 417 AYVSCGMASLARNLRRLTSVYHVDYIQPIDMMPQTARCEAVVKL 460


>gi|296116544|ref|ZP_06835154.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976756|gb|EFG83524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 425

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 25/187 (13%)

Query: 185 NSFTQPN-AG---INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F QP+ AG   I   +LE +   TK ++GD++ELY G G  S  LA    RV+A E  
Sbjct: 252 GAFLQPSRAGEDAIRCAILEAL--PTKRLKGDIIELYAGCGTLSFALAER-GRVMAHE-- 306

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +AA +          ++     + F       R+ NR   +     +   + +DPP
Sbjct: 307 ---GDAAAFACLKQACGGTRV-----QPF------HRDLNRQPVMGAVLAKAGAVVLDPP 352

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
            +G       +    P +++Y+SCNP +L RD + L    + ++RL + DQF ++  +E 
Sbjct: 353 HAGAGAQLHQITDGKPLNVIYVSCNPTALRRDATALRQAGYRLDRLTVIDQFLWSTEVES 412

Query: 359 GVLLVRK 365
             L  R 
Sbjct: 413 VCLFTRP 419


>gi|115387577|ref|XP_001211294.1| hypothetical protein ATEG_02116 [Aspergillus terreus NIH2624]
 gi|114195378|gb|EAU37078.1| hypothetical protein ATEG_02116 [Aspergillus terreus NIH2624]
          Length = 535

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 31/204 (15%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD------LLELYCGNGNFSLVLARH 230
           ++     +F Q N  I     E++   A  K  Q D      LL+ Y G+G F++ L+  
Sbjct: 340 VFTNKAGAFFQNNNSILSGFTEYIRQHALPKDNQDDPKPIKYLLDAYSGSGLFTITLSPL 399

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           F   L V++A+ S+ +AR N  AN + N       +                KD+   + 
Sbjct: 400 FRSSLGVDVAEQSIVSARDNARANSLPNTGFAAADAATL------------FKDVPYPAE 447

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-------STTHTI 341
           +   + +DPPR G  D  +  + ++    ++Y+SCN  +  RD++++       +  + I
Sbjct: 448 Q-TLLVIDPPRKGCSDDFLRQLLSFGPRRVVYVSCNVHTQARDVAVMVQGDAQKNIRYEI 506

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +  FD FP T H+E GV ++ K
Sbjct: 507 ESIRGFDFFPQTGHVE-GVAILNK 529


>gi|326406728|gb|ADZ63799.1| 23S rRNA uracil-5-methyltransferase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 460

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%)

Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           GD+ ++ Y G G   + +A    +V  +E+   +VE A+ N   N + N      ++++ 
Sbjct: 314 GDVVIDAYSGIGTIGISMADRVAKVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKI 373

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCN 324
                 E              +   IFVDPPR GLD+   G ++A        I+YISCN
Sbjct: 374 MPKWLSE------------GIKPDVIFVDPPRKGLDE---GFIKAAAMMNPRRIVYISCN 418

Query: 325 PDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357
           P +  RD +   +  + ++++   D FP T H+E
Sbjct: 419 PATFARDVVRFEAEGYLLDKVQPVDLFPQTHHIE 452


>gi|152968262|ref|YP_001364046.1| 23S rRNA methyluridine methyltransferase [Kineococcus radiotolerans
           SRS30216]
 gi|151362779|gb|ABS05782.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Kineococcus
           radiotolerans SRS30216]
          Length = 372

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 150/390 (38%), Gaps = 58/390 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S TL+   Y +Q+ +K +R R+++ A + +  L   RS    YR +A+  +    +    
Sbjct: 13  SCTLIELPYPRQVRDKEERCRELLAAHEGLRWLPSVRSPEAGYRNKAKMVVGGTVERPTF 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTSQS 114
            + D   +  +        PG L +  ++        L P      R +L  +    S S
Sbjct: 73  GILDAAGRGVDLSECPVCAPGILDLLPVLARFTTRAGLVPYDVPRRRGELKNVLITESPS 132

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHA-RKYQIQLIGRANKTKICLDRDYVDERLTV 173
            + +V  +             +R +D L A R++  QL+  A +  +       + +  V
Sbjct: 133 GELMVRFV-------------LRSQDRLPALRRHLPQLLREAPRLAVVSVNLLPEHKAVV 179

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----------------QGDLLEL 216
            G   I      +   P  G+++ +       T  +                    L +L
Sbjct: 180 EGDVEIALTERTTLRMPMGGVDLDLRPQSFFQTNTVVARELYAQVARWVDEVAPASLWDL 239

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G F+L  A    RV  +E++           A      +  V  ++ + T+     
Sbjct: 240 YCGVGGFALHCAAPGRRVTGIEVSA-----EAVESARAAAAGLPDVEFAAGDATRFALEA 294

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI 334
            E   L            + V+PPR G+     G ++     H++Y SCNP +L +DL+ 
Sbjct: 295 PEAPEL------------VVVNPPRRGIGPELSGWLERSDVAHVVYSSCNPVTLAKDLAA 342

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + +   + R  + D FP+T+H+E  VLL R
Sbjct: 343 MPSLRPV-RARVLDMFPHTQHVEVAVLLSR 371


>gi|300121541|emb|CBK22060.2| unnamed protein product [Blastocystis hominis]
          Length = 628

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 26/171 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL++ CG G   L LA     ++ V+I   ++E AR N  AN + N + +   +++    
Sbjct: 450 LLDVCCGTGTIGLCLASRVKFLIGVDIEASAIEDARLNAEANGIKNCEFICSPAEKVMAD 509

Query: 273 MRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNP-- 325
           + +  +  RL      +  Y    + VDPPRSGL    +   +   A   ++Y+SCNP  
Sbjct: 510 LLKREDIRRLDGSVALVVEYDHIVVIVDPPRSGLHKDIIPACRKCTAITELIYVSCNPTG 569

Query: 326 ------DSLCR---DLSILSTTHTIERLA----------LFDQFPYTRHME 357
                  SLC    D  +        RL             D FP+T H E
Sbjct: 570 SFVENTGSLCVEHFDFVVTLCCQPNRRLPGDPFVAIKSQPVDLFPFTEHCE 620


>gi|256826666|ref|YP_003150625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum
           DSM 15641]
 gi|256582809|gb|ACU93943.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum
           DSM 15641]
          Length = 543

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 21/196 (10%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVL---AATKGIQG-DLLELYCGNGNFSLVLARHF-- 231
           L +R   +SF Q NA     +    L   A T   Q   +L+ YCG G   LV A     
Sbjct: 352 LSFRISSHSFYQVNAVQTEVLYRTALEMAACTSSHQALTILDAYCGTGTIGLVAASQVPN 411

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V+ ++ A  S+  AR N   N + N   +   + +F   + R    +    ID+    
Sbjct: 412 SQVIGIDNASSSIRDARQNAVHNGIANATFLCEDATDFL--LHRAAASD---SIDV---- 462

Query: 292 FKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348
              + +DPPR+G     +      A   ++YISCNP +  RD+ + +   + + RL   D
Sbjct: 463 ---LMMDPPRAGSTSEFIEAACALAPERVVYISCNPATQKRDVRLFARGGYHLVRLRAVD 519

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   LL+R
Sbjct: 520 MFPHTDHIETVALLMR 535


>gi|46200920|ref|ZP_00056202.2| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 234

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 27/186 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP- 242
            +F QP  G  + + E +++A  +G+   + +LYCG G+FSL LA          +  P 
Sbjct: 66  GAFLQPTKGGELAIAEAIVSAIPEGVP--VADLYCGCGSFSLPLA----------LRGPV 113

Query: 243 -SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +VE  +  +AA      +     S E     RR    + LK        ++ + +DPPR
Sbjct: 114 HAVEGEQGPVAALDAAARREGLALSTEVRDLARRPLAVHELKA-------YRAVILDPPR 166

Query: 302 SGLDDATVGMVQAYPH----ILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHM 356
           +G       + +  P     I  +SCNP +L RDL  L      IE +   DQFP++ H+
Sbjct: 167 AGAAAQAAELARPNPAGPATIAMVSCNPATLARDLRTLCDGGWHIEHIVPIDQFPWSTHL 226

Query: 357 ECGVLL 362
           E   +L
Sbjct: 227 EAVTIL 232


>gi|229817410|ref|ZP_04447692.1| hypothetical protein BIFANG_02672 [Bifidobacterium angulatum DSM
           20098]
 gi|229785199|gb|EEP21313.1| hypothetical protein BIFANG_02672 [Bifidobacterium angulatum DSM
           20098]
          Length = 425

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 27/209 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQ-----PNAGINVHMLEWVLAATKG-IQGDLLELYCGNGN 222
           ER+TVAGR   Y    N F Q     P A  N H+++ V     G +   L +LY G+G 
Sbjct: 230 ERVTVAGREFSYMVDANGFWQVHRQAPIALAN-HVIDLVRGEMDGAVSAVLWDLYSGSGL 288

Query: 223 FSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+L LA       R+ +VE    +V++ + N+ A  +N+V +             R  + 
Sbjct: 289 FTLPLATMIAERTRMFSVEGGDAAVKSQQRNLRALGLNDVDV-------------RCGDV 335

Query: 280 NR-LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL-SIL 335
           +R L  +  H      + +DPPR+G        +       I+YI+C+  SL RD  +I 
Sbjct: 336 SRTLAHVPAHLAHPDVVVLDPPRAGAHAKVCRQIAEAGARSIVYIACDCTSLARDTATIT 395

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
              + +  +  +D +P T H+E   L  R
Sbjct: 396 GLGYELADIHAYDIYPMTHHVETVALFRR 424


>gi|15673160|ref|NP_267334.1| hypothetical protein L193873 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|50401787|sp|Q9CGB9|YLJE_LACLA RecName: Full=Uncharacterized RNA methyltransferase yljE
 gi|12724144|gb|AAK05276.1|AE006350_3 conserved hypothetical protein [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 460

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%)

Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           GD+ ++ Y G G   + +A    +V  +E+   +VE A+ N   N + N      ++++ 
Sbjct: 314 GDVVIDAYSGIGTIGISMADRVAKVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKI 373

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCN 324
                 E              +   IFVDPPR GLD+   G ++A        I+YISCN
Sbjct: 374 MPKWLSE------------GIKPDVIFVDPPRKGLDE---GFIKAAAMMNPRRIVYISCN 418

Query: 325 PDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357
           P +  RD +   +  + ++++   D FP T H+E
Sbjct: 419 PATFARDVVRFEADGYLLDKVQPVDLFPQTHHIE 452


>gi|323464012|gb|ADX76165.1| putative RNA methyltransferase, truncated [Staphylococcus
           pseudintermedius ED99]
          Length = 75

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 295 IFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + VDPPR G D   +  + A     I+Y+SCNP +  RD+ +LS  + ++ +   D FP+
Sbjct: 2   VTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLRDIEMLSAQYELKEMTPVDMFPH 61

Query: 353 TRHMECGVLLVRK 365
           T H+E   LLVRK
Sbjct: 62  TTHVETVALLVRK 74


>gi|285808307|gb|ADC35838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [uncultured bacterium
           89]
          Length = 405

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 144/356 (40%), Gaps = 56/356 (15%)

Query: 10  YEQQLAEKVDRLRQMML---AFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL+ K   L + +     FQ P ++ I  +EP  YR R + HI   G        ++
Sbjct: 91  YEAQLSAKRAILIETLTRVGKFQPPEDIHIVSAEPWGYRNRTQLHIAGTGIG----YLEE 146

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++ +   +D     S  IN  +  ++A +R     R  +  I+  T+++   +  L   R
Sbjct: 147 RSHKLCPVDRCPISSPRINQAIGTLVAMVRDSRWPRF-VRSIELFTNETGLQLNVLESSR 205

Query: 126 LLDDAWRE-CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
            +   + E CA +L                            V   +       +YR   
Sbjct: 206 PVARHFFEWCAEQLGST-------------------------VSGPIEYPSGGALYRVSH 240

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SF Q N  +   ++   L  T+G      +LY G G FS+ L + F +V AVE +  +V
Sbjct: 241 KSFFQVNRFLADQLVSLALEGTEGETA--ADLYAGVGLFSIPLRKRFAQVNAVESSGSAV 298

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
               +N     V  V+  +  S  +   +    +F               +  DPPR+GL
Sbjct: 299 RDLIFNAERAEV-AVETYQQPSAAYLHNLAAAPDF---------------VLADPPRAGL 342

Query: 305 D-DATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
             D  + + +  P  I  ++C+P +L RDL+ +L+  + I  + + D FP T H+E
Sbjct: 343 GKDVVMELARLQPRKITIVACDPATLARDLAGLLAAGYKINGVEMVDLFPQTFHIE 398


>gi|301619777|ref|XP_002939250.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Xenopus
           (Silurana) tropicalis]
          Length = 384

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 33/174 (18%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            G LL+L CG G   L LA +F  V+ VE+ + +V  AR+N   N + N + +   +++ 
Sbjct: 225 HGTLLDLCCGTGAIGLSLAGYFKNVIGVEMVEDAVLDARWNADFNGIENCQFLSGRAEKL 284

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFV----DPPRSGLDDATVGMVQAYPHI---LYIS 322
                           ++ SY+ K + V    +PPR+GL    V  ++    I   L+++
Sbjct: 285 LP--------------NLLSYKQKELSVLAVANPPRAGLHPRVVRALRNCEDIRTLLFVT 330

Query: 323 CNPDS-LCRDLSILSTTHTIERLAL-----------FDQFPYTRHMECGVLLVR 364
           C P+    R+L+ L    ++E+  L            D FP+T H E  +LL R
Sbjct: 331 CKPEGEATRNLTELCCAPSLEQKILGEAFVPQEALGVDLFPHTTHCELALLLTR 384


>gi|82776062|ref|YP_402409.1| 23S rRNA methyluridine methyltransferase [Shigella dysenteriae
           Sd197]
 gi|309786469|ref|ZP_07681093.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae
           1617]
 gi|123563144|sp|Q32ID7|RUMB_SHIDS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|81240210|gb|ABB60920.1| putative enzyme [Shigella dysenteriae Sd197]
 gi|308925657|gb|EFP71140.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae
           1617]
          Length = 375

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTCLQFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                E                + V+PPR G+       +   A   I+Y SCN  ++ +
Sbjct: 297 QGEVPEL---------------VLVNPPRRGIGKPLCDYLSTMAPCFIIYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + IER+ LFD FP+T H E   L V+
Sbjct: 342 DIRELPG-YRIERVQLFDMFPHTAHYEVLTLQVK 374


>gi|317484523|ref|ZP_07943432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bilophila wadsworthia
           3_1_6]
 gi|316924241|gb|EFV45418.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bilophila wadsworthia
           3_1_6]
          Length = 449

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 17/155 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L ++Y G G+  L + R+  RV+ +E    +V  AR N  A      K+ +  +K     
Sbjct: 308 LWDVYGGVGSIGLYMGRN-ARVVGIEEMPGAVRYARGNAKALGRKAYKVEQGDAKSV--- 363

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYP-HILYISCNPDSLC 329
                   RL  +     +   + VDPPR+G+D A V   + +A P  ++Y+SCNP +L 
Sbjct: 364 ------LGRLVKL---GPKPDVVVVDPPRAGID-AKVAQQLAEAAPLRLIYVSCNPATLA 413

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD++ L+    ++     D FP T H+E   LL R
Sbjct: 414 RDVARLAPAFRLKAARPVDLFPQTPHVETVALLER 448


>gi|197104814|ref|YP_002130191.1| RNA methyltransferase, TrmA family [Phenylobacterium zucineum HLK1]
 gi|196478234|gb|ACG77762.1| RNA methyltransferase, TrmA family [Phenylobacterium zucineum HLK1]
          Length = 409

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q        M E+V  A  G    + +LYCG G F+  LA     V A + A  +V
Sbjct: 242 GAFLQATRDAEAAMAEFVAGAAAGAS-RIADLYCGVGTFTFRLA-EVAPVHAADFAAEAV 299

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +A    +A      +K V   +++    +RR      LK  D+  +       DPPR+G 
Sbjct: 300 QALTAALAG--APGLKGVTAEARDL---VRRPVLAEELKKTDVAVF-------DPPRAGA 347

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            + T  + ++    ++ +SCNP +  RD  +++     +ER+   DQF ++ H+E
Sbjct: 348 AEQTAELARSQVARVIGVSCNPATFARDARTLIDAGFRLERVLPVDQFLWSPHIE 402


>gi|58865360|ref|NP_001011895.1| tRNA (uracil-5-)-methyltransferase homolog A [Rattus norvegicus]
 gi|53733829|gb|AAH83619.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Rattus
           norvegicus]
 gi|149019780|gb|EDL77928.1| rCG36750, isoform CRA_a [Rattus norvegicus]
          Length = 615

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 25/165 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA    +V+ +E+ + +VE AR N   N ++NV+     +++    
Sbjct: 427 VLDVCCGTGTIGLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPG 486

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +  +    +L  +           +DPPR+GL    +  ++   +I   LY+SCNP +  
Sbjct: 487 LVSKLSSQQLVAV-----------LDPPRAGLHSKVILAMRKAENIKRLLYVSCNPRAAM 535

Query: 328 -----LCRDLS--ILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +  T  H ++ +A+ D FP T H E  +L  R
Sbjct: 536 GNFVDLCRAPSNRVKGTPFHPVKAVAV-DLFPQTPHCEMLILFER 579


>gi|329902596|ref|ZP_08273158.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548743|gb|EGF33385.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 434

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 123/286 (43%), Gaps = 27/286 (9%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR--ECAIRLRD 140
           ++AL++ +   I    ++  ++ QI+    + +  +VT++  R++    R  E  ++   
Sbjct: 157 VSALLVPLRELIAALSIVE-QIPQIELAVGEGNDGVVTVLVLRIMAPLSRADEVLLKAFA 215

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            LH   + +Q  G  +          +   L   G T+ ++  +  FTQ N  IN  ++ 
Sbjct: 216 DLHQIVWWLQAAGPESAVPYYPANQSLQYSLPEFGITMPFKPTD--FTQVNHQINRVLVA 273

Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
             L      Q D  + +L+CG GNF+L +A     V+ +E +    + A  N   N V +
Sbjct: 274 RALRLLDA-QPDERIADLFCGLGNFTLPIATQARAVVGIEGSTALTQRAMDNARFNGVQD 332

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-FKTIFVDPPRSGLDDATVGMVQAYP- 316
                     F       R    +   D+ +   F  + +DPPR G       + +  P 
Sbjct: 333 -------KTSFGC-----RNLFDITGADLVALGYFDRLLIDPPRDGAMALCEALAELQPA 380

Query: 317 ----HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
                I+Y+SCNP +L RD  +L +  + + +  + + FP+T H+E
Sbjct: 381 QKPRRIVYVSCNPATLARDAQLLVAGGYVLSQAGVVNMFPHTAHVE 426


>gi|322515717|ref|ZP_08068685.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus ureae
           ATCC 25976]
 gi|322118207|gb|EFX90509.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus ureae
           ATCC 25976]
          Length = 391

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+         ++  +EI+  ++ +A  +     + N+    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F        E     D+         + V+PPR G+       +     P+++Y SCN  
Sbjct: 307 FAL-----NEKGATPDL---------VIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAQ 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +D   LS  ++++++ L D FP+T H E    L++K
Sbjct: 353 TMAKDFEALSN-YSLQKVQLLDMFPHTSHYEVLTFLIKK 390


>gi|238027066|ref|YP_002911297.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia glumae
           BGR1]
 gi|237876260|gb|ACR28593.1| RNA methyltransferase, TrmA family protein [Burkholderia glumae
           BGR1]
          Length = 464

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 22/182 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 286 FTQVNHQINRVLVGRALRLLAPRRGDRVLDLFCGIGNFTLPLARLSREVVGIEGSEVLTT 345

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N  AN V+       +   F      E   + L+ +      F    VDPPR G  
Sbjct: 346 RALENAKANGVD-------AHTSFACRNLFEVTADDLRALG----GFDKFLVDPPREGAL 394

Query: 304 -LDDATVGMVQA----YPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
            +  A   + Q+     P  I+Y+SCNP +L RD  +L     + +    + + FP T H
Sbjct: 395 AVSKALAEIAQSGDGPLPQRIVYVSCNPATLARDAGLLVHEAGYRLRGAGVVNMFPNTSH 454

Query: 356 ME 357
           +E
Sbjct: 455 VE 456


>gi|315023445|gb|EFT36453.1| RNA methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325335993|gb|ADZ12267.1| SAM-dependent methyltransferase, tRNA
           (uracil-5-)-methyltransferase-like protein [Riemerella
           anatipestifer RA-GD]
          Length = 469

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 17/161 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  + +LY G G  +  +AR   +V+ +E    ++ AA+ +   N ++N        
Sbjct: 320 LKGDEVVYDLYTGTGTIAQFVARKAKQVIGIESVPEAIAAAKEHAKHNGLDNCTFYCGDM 379

Query: 267 KE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
           K+ FT     +              +   +  DPPR G+    V  +   A   I+Y+SC
Sbjct: 380 KDIFTDEFLAQHP------------KADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSC 427

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           N  +  RDL+++   + +E++   D FP T H+E   LL +
Sbjct: 428 NSATQARDLALMKEHYRVEKILPVDMFPQTHHIENIALLKK 468


>gi|33865762|ref|NP_897321.1| hypothetical protein SYNW1228 [Synechococcus sp. WH 8102]
 gi|50401510|sp|Q7U6V8|Y1228_SYNPX RecName: Full=Uncharacterized RNA methyltransferase SYNW1228
 gi|33632932|emb|CAE07743.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 465

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 21/165 (12%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++ W+  A   + G +++ YCG G  SL LA     V+ +EI   S++ AR N  AN + 
Sbjct: 307 IVSWLSQAE--LAGPIVDAYCGIGTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLG 364

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                  +  EF          N LK+          + VDPPR GL+ + +  + + P 
Sbjct: 365 -------ARTEFQAG----DVANLLKET---LATCSALVVDPPRRGLESSVIEAILSDPP 410

Query: 318 IL--YISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHME 357
            L  Y+SC+  +  RDL  L      + +E+L   D FP T H+E
Sbjct: 411 GLLAYLSCDMATQARDLKRLLQPEGPYRLEQLQPVDFFPQTTHLE 455


>gi|194290012|ref|YP_002005919.1| 23S rRNA 5-methyluridine methyltransferase [Cupriavidus taiwanensis
           LMG 19424]
 gi|193223847|emb|CAQ69856.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 487

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 80/183 (43%), Gaps = 24/183 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L       GD LL+L+CG GNF+L LA     V+ +E ++    
Sbjct: 309 FTQVNHQINRVLIGRALRLLDAQPGDRLLDLFCGIGNFTLPLATQGKSVMGIEGSEALTT 368

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N +        +  EF       R    +   DI +  RF    VDPPR G 
Sbjct: 369 RALANAEYNGL-------AAKTEFAC-----RNLFEVTADDIAALGRFDRWLVDPPREGA 416

Query: 304 --LDDATVGMVQAYPHIL-----YISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
             +  A   + Q    +L     Y+SC+P +L RD  +L     + +    + + FP+T 
Sbjct: 417 LAVSKALGELAQQGSDVLPRRIVYVSCSPATLARDAGLLVHEAGYRLSGAGVVNMFPHTS 476

Query: 355 HME 357
           H+E
Sbjct: 477 HVE 479


>gi|313206559|ref|YP_004045736.1| 23S rRNA m(5)u-1939 methyltransferase [Riemerella anatipestifer DSM
           15868]
 gi|312445875|gb|ADQ82230.1| 23S rRNA m(5)U-1939 methyltransferase [Riemerella anatipestifer DSM
           15868]
          Length = 469

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 17/161 (10%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  + +LY G G  +  +AR   +V+ +E    ++ AA+ +   N ++N        
Sbjct: 320 LKGDEVVYDLYTGTGTIAQFVARKAKQVIGIESVPEAIAAAKEHAKHNGLDNCTFYCGDM 379

Query: 267 KE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
           K+ FT     +              +   +  DPPR G+    V  +   A   I+Y+SC
Sbjct: 380 KDIFTDEFLAQHP------------KADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSC 427

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           N  +  RDL+++   + +E++   D FP T H+E   LL +
Sbjct: 428 NSATQARDLALMKEHYRVEKILPVDMFPQTHHIENIALLKK 468


>gi|315282665|ref|ZP_07871022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
           S4-120]
 gi|313613689|gb|EFR87476.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
           S4-120]
          Length = 101

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%)

Query: 290 YRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
           +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L RDL++L+  + I  +  
Sbjct: 23  FRPDAVIVDPPRSGCDQGLIKSLLEVEA-KQLVYVSCNPSTLARDLALLAKKYRIRYMQP 81

Query: 347 FDQFPYTRHMECGVLLVRK 365
            D FP T H+E  VLL  K
Sbjct: 82  VDMFPQTAHVETVVLLQLK 100


>gi|260428897|ref|ZP_05782874.1| hypothetical protein CSE45_3393 [Citreicella sp. SE45]
 gi|260419520|gb|EEX12773.1| hypothetical protein CSE45_3393 [Citreicella sp. SE45]
          Length = 407

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 79/162 (48%), Gaps = 20/162 (12%)

Query: 202 VLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +LA  +   GD   +++L+ G G F+L LA +  RV AVE  K           A  V  
Sbjct: 250 LLAGVREAVGDASHIVDLFAGCGTFALPLAENA-RVHAVEGDK-----------AMTVAL 297

Query: 259 VKIVRMSSK-EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YP 316
            K  RM+       +  R+   N L   D+H  RF    +DPPR+G +     +  A  P
Sbjct: 298 DKGWRMAEGLRHVTSEARDLFRNPLLPEDLH--RFDAAVIDPPRAGAEAQVAELAAARIP 355

Query: 317 HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
            I ++SCNP +  RD S+L    +T++ L + DQF ++ H+E
Sbjct: 356 RIAFVSCNPVTFARDASVLVGAGYTLDWLQVVDQFRWSTHVE 397


>gi|189350615|ref|YP_001946243.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|189334637|dbj|BAG43707.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC
           17616]
          Length = 465

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 82/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTT 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R    F    D DI +   F    +DPPR G 
Sbjct: 347 RALANARENGVDG---------HTTFACR--NLFEVTAD-DIRALGAFDKFLIDPPREGA 394

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   D A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 395 LAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 455 HVESIALFER 464


>gi|324997158|ref|ZP_08118270.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudonocardia sp. P1]
          Length = 404

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 79/173 (45%), Gaps = 28/173 (16%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHV 256
           EW  A   G+  DL   Y G G    VLAR       VL VE + PS  A     A   +
Sbjct: 251 EWAGAPRGGVAWDL---YGGVGLLGSVLARQVGPDGTVLVVE-SSPSAVAD-GAAALADL 305

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLK-DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA 314
             V  VR          R ERE  RL+ D D+       +  DPPR+GL  A V  +   
Sbjct: 306 PQVSFVRG---------RAEREIARLRPDPDV-------VVTDPPRTGLGRAAVRALATR 349

Query: 315 YPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
            P  +++++C+P +L RDL++ +   + +  L  FD FP T HME   LL R 
Sbjct: 350 GPRRVVHVACDPAALGRDLALFAEHGYRVAGLRAFDAFPMTHHMEAVALLERP 402


>gi|257464907|ref|ZP_05629278.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor 202]
 gi|257450567|gb|EEV24610.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor 202]
          Length = 391

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 23/159 (14%)

Query: 215 ELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A+          +  +EI+  ++ +A  +     + NV    + S +
Sbjct: 247 DLFCGVGGFGLHCAKALQDTNPEVTLTGIEISASALASATQSAEKLGLKNVTFASLDSAQ 306

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
           F        E   + D+         + V+PPR G+  A    +     P+++Y SCN  
Sbjct: 307 FAL-----NEKGSVPDL---------VIVNPPRRGIGKALAEYLNQLGSPYVIYSSCNAK 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++  D +     + + ++ LFD FP+T H E   LLV+K
Sbjct: 353 TMAEDFASFDN-YVLAKVQLFDMFPHTAHYEVLTLLVKK 390


>gi|119717975|ref|YP_924940.1| 23S rRNA methyluridine methyltransferase [Nocardioides sp. JS614]
 gi|119538636|gb|ABL83253.1| 23S rRNA m(5)U-747 methyltransferase [Nocardioides sp. JS614]
          Length = 379

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 20/184 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKP 242
            SF Q N  +   +     A T  +  G + +LYCG G F+L +A      V  VE++  
Sbjct: 211 QSFFQTNTAMAAELYRLARAWTAELAPGRVWDLYCGVGGFALAIASTAHAEVTGVEVSGE 270

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++ +A    A+     +  VR  + + T  +    +   L            + V+PPR 
Sbjct: 271 AIASA---TASAREAGLDRVRFEAGDATAWVSDRPDVPDL------------VVVNPPRR 315

Query: 303 GLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           GL     G ++     H+LY SCN  +L RDL  + +   + R  L D FP T H E   
Sbjct: 316 GLGPELSGWLEDSGVRHVLYSSCNAHTLARDLDAMPSLRPV-RAQLLDMFPNTAHYEVLA 374

Query: 361 LLVR 364
           LL R
Sbjct: 375 LLER 378


>gi|319779692|ref|YP_004130605.1| RNA methyltransferase, TrmA family [Taylorella equigenitalis MCE9]
 gi|317109716|gb|ADU92462.1| RNA methyltransferase, TrmA family [Taylorella equigenitalis MCE9]
          Length = 439

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 31/187 (16%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           + FTQ N  IN  M+   L   +  Q D + +L+CG GNF+L L+     V+ +E ++  
Sbjct: 262 SDFTQVNPFINRTMIRRALDLLEVHQNDRVADLFCGLGNFTLPLSTIAKEVVGIEGSESL 321

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY------RFKTIFV 297
            + A    A NH                 ++ + +F+ L   ++ S        F  + +
Sbjct: 322 TKRAMQG-AQNH----------------GLQDKVKFSTLNLFEVDSTWLEGLGAFDKMLL 364

Query: 298 DPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
           DPPR G       +    P      I+Y+SCNP +L RD  +L  S  + +    + + F
Sbjct: 365 DPPRDGAFAVCKALTAMNPSLRPKRIVYVSCNPSTLARDADVLVNSGAYKLLGAGVINMF 424

Query: 351 PYTRHME 357
           P+T H+E
Sbjct: 425 PHTAHVE 431


>gi|221632250|ref|YP_002521471.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermomicrobium roseum
           DSM 5159]
 gi|221157158|gb|ACM06285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermomicrobium roseum
           DSM 5159]
          Length = 406

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 21/182 (11%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVE 238
           +R   +SF Q N  +   +++ VL        +++ + Y G G F+  LA    RV+ +E
Sbjct: 230 FRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVVDAYAGVGTFAAFLAPRVARVIGIE 289

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            +  +V  A+ N+  +  +NV        E+ QA + E    +L      + R   + +D
Sbjct: 290 ESPSAVSDAQVNL--DPFDNV--------EYVQA-KVEHVLGKL------AVRPDVVILD 332

Query: 299 PPRSGL-DDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRH 355
           PPR G   +A  G++    P ++Y+SC+P +L RDL  ++   + +  +   D FP T H
Sbjct: 333 PPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTPLDMFPQTYH 392

Query: 356 ME 357
           +E
Sbjct: 393 IE 394


>gi|219848732|ref|YP_002463165.1| (Uracil-5)-methyltransferase [Chloroflexus aggregans DSM 9485]
 gi|219542991|gb|ACL24729.1| (Uracil-5)-methyltransferase [Chloroflexus aggregans DSM 9485]
          Length = 398

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 17/184 (9%)

Query: 185 NSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           N+F Q N  +   ++ + V AA       + +LY G G   L LAR    V  VE    S
Sbjct: 228 NTFFQNNVYLADRLIGDAVAAANPNPTMRVADLYGGVGAIGLHLARRAAVVDCVEAVAES 287

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              A++N   N + N   +   +  + QA                S     I  DPPR+G
Sbjct: 288 ATLAQHNAVVNGITNFNPICADTLAYLQAQ--------------PSGSLPLIVADPPRTG 333

Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L       +       I+Y+SCNP +   DL +L   + +  L  +D FP+T H+E   +
Sbjct: 334 LGPQVCKELLRIGAQRIVYVSCNPLTQVSDLRLLQAAYRVTDLRGYDMFPHTPHVETIAV 393

Query: 362 LVRK 365
           L R 
Sbjct: 394 LERS 397


>gi|145254861|ref|XP_001398782.1| tRNA(m5U54)methyltransferase [Aspergillus niger CBS 513.88]
 gi|134084367|emb|CAK48706.1| unnamed protein product [Aspergillus niger]
          Length = 533

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 23/164 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L V++A  S+ +AR N   N + N       +      
Sbjct: 379 LLDAYSGSGLFTITLSPLFKSSLGVDVAGDSIASARDNARDNKLPNTGFAAADAATL--- 435

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                     KD+     +   + +DPPR G  D  +  + A+    ++Y+SCN  +  R
Sbjct: 436 ---------FKDVPYPPDQ-TLLVIDPPRKGCSDDFLRQLLAFGPRRVVYVSCNVHTQAR 485

Query: 331 DLSILSTTHT-------IERLALFDQFPYTRHMECGVLLVRKPS 367
           D++++    T       IE +  FD FP T H+E GV ++ K S
Sbjct: 486 DVAVMVQGDTEKKIRYEIESIRGFDFFPQTGHVE-GVAILNKTS 528


>gi|116512081|ref|YP_809297.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116107735|gb|ABJ72875.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 456

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 16/152 (10%)

Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           GD+ ++ Y G G   + +A     V  +E+   +VE A+ N   N + N      ++++ 
Sbjct: 310 GDIVIDAYSGIGTIGISMADRVAEVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKI 369

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
                 E              +   IFVDPPR GLD+  +    A     I+YISCNP +
Sbjct: 370 MPKWLDE------------GIKPDVIFVDPPRKGLDETFIKSATATNPRRIVYISCNPAT 417

Query: 328 LCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358
             RD +   +  + ++++   D FP T H+E 
Sbjct: 418 FARDVVRFENEGYILDKVQPVDLFPQTHHIEL 449


>gi|332637541|ref|ZP_08416404.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella cibaria KACC
           11862]
          Length = 459

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 21/181 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKG--IQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           NSF Q N       + + +AATKG   + D +++ Y G G   L +A   D+VL VE+ +
Sbjct: 284 NSFYQVNP--QTTEVLYDMAATKGELKESDTVIDAYSGIGTIGLTVADRVDKVLGVEVIE 341

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A+ N+A N+V N + V   + E         +  + KD      +   IFVDPPR
Sbjct: 342 RAVIDAQKNVANNNVQNAEFVTADAPE---------QMQKWKD---GGLKPDVIFVDPPR 389

Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
            GL +  +  V        +Y+SCNP+++ RD   L          +   DQFP T H+E
Sbjct: 390 RGLTEELLDAVADMNPDRFVYVSCNPETMARDARYLIDKGFRIKGDIQPLDQFPQTAHVE 449

Query: 358 C 358
            
Sbjct: 450 A 450


>gi|291459844|ref|ZP_06599234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417634|gb|EFE91353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 466

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 20/240 (8%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           R+R  LH R   +        T+I    D++ E L      L +R    SF Q N+ +  
Sbjct: 229 RIRGILHTRNDALSDAVIDEGTEILWGEDFICEELL----GLRFRISPFSFFQTNS-LGA 283

Query: 197 HML--------EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
             L           L A +G Q  ++ +LY G G  + +++      + +E+   +V AA
Sbjct: 284 EKLYSKIRDYAALSLPAGRGGQKPVIYDLYSGTGTITQLMSLAASLSIGIELVPEAVRAA 343

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           R N   N + N       + +  + +    E  R       +     I +DPPR G+   
Sbjct: 344 RENARDNGITNCAFF---AGDVLKVISEGEELIREDGSRYPAPHPDLIILDPPRDGIHPK 400

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  + AY  P ++Y++C P S  RDL  L    + ++     D FP T + E   LL +
Sbjct: 401 ALRKIIAYASPALIYVACKPKSFARDLLPLQEAGYRLQSCCPVDMFPQTNNCELVALLSK 460


>gi|125624135|ref|YP_001032618.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492943|emb|CAL97906.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070909|gb|ADJ60309.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 456

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 16/152 (10%)

Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           GD+ ++ Y G G   + +A     V  +E+   +VE A+ N   N + N      ++++ 
Sbjct: 310 GDIVIDAYSGIGTIGISMADRVAEVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKI 369

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
                 E              +   IFVDPPR GLD+  +    A     I+YISCNP +
Sbjct: 370 MPKWLDE------------GIKPDVIFVDPPRKGLDETFIKSATATNPRRIVYISCNPAT 417

Query: 328 LCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358
             RD +   +  + ++++   D FP T H+E 
Sbjct: 418 FARDVVRFENEGYILDKVQPVDLFPQTHHIEL 449


>gi|308233546|ref|ZP_07664283.1| RNA methyltransferase, TrmA family protein [Atopobium vaginae DSM
           15829]
 gi|328944339|ref|ZP_08241803.1| TrmA family RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327491258|gb|EGF23033.1| TrmA family RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 449

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 23/155 (14%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS-KEFTQA 272
           L+LYCG G F+L LA+    V+ VE    S++  R +I   +++NV+ +   + +E+ +A
Sbjct: 310 LDLYCGAGTFTLPLAQRARDVIGVEAQGSSIQDLRRHIKLFNLHNVQAIGGDALREYPKA 369

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                          H+     I VDPPR+GL+      +       I Y+SC+P +L R
Sbjct: 370 ---------------HA---DVIVVDPPRAGLEAGVCDKLSQSGARAIAYVSCDPQTLAR 411

Query: 331 DLS--ILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D+   I    +   ++   D FP + H+E   LL+
Sbjct: 412 DIRRFIDKGAYLPAKITPVDLFPQSWHIENVCLLL 446


>gi|73995903|ref|XP_534759.2| PREDICTED: similar to HpaII tiny fragments locus 9C [Canis
           familiaris]
          Length = 667

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA    RV+ +E+ + +VE AR N   N ++NV+     +++   A
Sbjct: 477 VLDVCCGTGTIGLALAPRVKRVVGIELCQEAVEDARVNARDNELSNVEFHCGRAEDLVPA 536

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    +  V   +    +LY+SCNP +  
Sbjct: 537 L-----VSRLASQQL------VAILDPPRAGLHSKVILAVRRAENLKRLLYVSCNPRAAM 585

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368
                LCR  S  +        +    D FP T H E  +L   V  P+G
Sbjct: 586 GNFVDLCRAPSNRVKGVPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 635


>gi|221198086|ref|ZP_03571132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD2M]
 gi|221204355|ref|ZP_03577372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD2]
 gi|221175212|gb|EEE07642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD2]
 gi|221182018|gb|EEE14419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD2M]
          Length = 503

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 325 FTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTT 384

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   DI +   F    +DPPR G 
Sbjct: 385 RALANARENGVDG---------HTTFACRNLFE---VTADDIRALGAFDKFLIDPPREGA 432

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   D A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 433 LAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 492

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 493 HVESIALFER 502


>gi|221212764|ref|ZP_03585740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD1]
 gi|221166977|gb|EED99447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD1]
          Length = 487

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 309 FTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTT 368

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   DI +   F    +DPPR G 
Sbjct: 369 RALANARENGVDG---------HTTFACRNLFE---VTADDIRALGAFDKFLIDPPREGA 416

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   D A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 417 LAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 476

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 477 HVESIALFER 486


>gi|10437555|dbj|BAB15067.1| unnamed protein product [Homo sapiens]
          Length = 475

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ VE+   +VE AR N   N ++NV+     +++    
Sbjct: 286 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 345

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    +  ++   +   +LY+SCNP +  
Sbjct: 346 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAM 394

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368
                LCR  S  +        +    D FP T H E  +L   V  P+G
Sbjct: 395 GNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 444


>gi|301089440|ref|XP_002895021.1| RNA methyltransferase [Phytophthora infestans T30-4]
 gi|262104003|gb|EEY62055.1| RNA methyltransferase [Phytophthora infestans T30-4]
          Length = 545

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 21/192 (10%)

Query: 185 NSFTQPN---AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           +SF QPN   A +    ++ ++AA    +  + +L+CG G+  + +  + ++V+  E+  
Sbjct: 341 DSFFQPNSNQASVLYREIQRMMAALPK-KPVVWDLFCGVGSIGICMGAYAEKVVGFELVD 399

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT----IFV 297
            +VE A+ N   N  +    ++    +  ++ + E   +R+                + V
Sbjct: 400 AAVERAKVNARLNGYS-ADHMQFFCVDLAKSWQEEEFLDRIASHSDGGSSSSNLPDIVIV 458

Query: 298 DPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST----------THTIERLA 345
           DPPR+GL    + M++  A  HI Y+SCNP S   DL               T+ +  L 
Sbjct: 459 DPPRAGLQKKLIKMLRRLAPRHICYVSCNPHSQAPDLEAFCAKVKPEMGEVGTYRVRYLQ 518

Query: 346 LFDQFPYTRHME 357
             D  P+T H+E
Sbjct: 519 PVDMLPHTPHIE 530


>gi|304321306|ref|YP_003854949.1| putative rna methyltransferase protein [Parvularcula bermudensis
           HTCC2503]
 gi|303300208|gb|ADM09807.1| putative rna methyltransferase protein [Parvularcula bermudensis
           HTCC2503]
          Length = 438

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 15/152 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G G FSL LA    RVLA E A  +V A R   A            S+      +R
Sbjct: 296 DLFAGIGTFSLPLAATGARVLAAEGAPDAVSALRTGAA------------SAGLAVDVLR 343

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLS 333
           R+   + +   D+ +  F+ +  DPPR+G       + +   P +  +SC P +L RDL 
Sbjct: 344 RDLFTDPIAAEDLAA--FEAVVFDPPRAGAAAQAAAIAEAGVPLVAAVSCQPGTLARDLR 401

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             S  + +  L + DQF ++ H+E   +L R+
Sbjct: 402 AFSAAYDLTALTVVDQFLWSGHIEVVAILRRR 433


>gi|161524629|ref|YP_001579641.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|160342058|gb|ABX15144.1| RNA methyltransferase, TrmA family [Burkholderia multivorans ATCC
           17616]
          Length = 487

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 309 FTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTT 368

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   DI +   F    +DPPR G 
Sbjct: 369 RALANARENGVDG---------HTTFACRNLFE---VTADDIRALGAFDKFLIDPPREGA 416

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   D A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 417 LAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 476

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 477 HVESIALFER 486


>gi|16764244|ref|NP_459859.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|20455404|sp|Q8ZQJ5|RUMB_SALTY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|16419391|gb|AAL19818.1| putative tRNA (uracil-5-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|312911910|dbj|BAJ35884.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223244|gb|EFX48313.1| 23S rRNA Uracil-5- -methyltransferase rumB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 376

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + I+R+ LFD FP+T H E   LL R 
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRRS 375


>gi|167992134|ref|ZP_02573232.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205329669|gb|EDZ16433.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246138|emb|CBG23941.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992643|gb|ACY87528.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157465|emb|CBW16955.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|323129187|gb|ADX16617.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987814|gb|AEF06797.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 376

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + I+R+ LFD FP+T H E   LL R 
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRRS 375


>gi|167550411|ref|ZP_02344168.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205324510|gb|EDZ12349.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 375

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRR 374


>gi|157868729|ref|XP_001682917.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126373|emb|CAJ04501.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 602

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 20/165 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+L  G G   L L++H  RV+ +E+ + +V  AR N   N + N +      +    +
Sbjct: 406 LLDLCSGTGTIGLTLSKHVKRVIGIELVESAVANARRNAQQNGITNAEFHCGRVEHLLPS 465

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLC 329
           +          DI         + +DPPR+G++   +  ++    I   +YISC   +L 
Sbjct: 466 VISSLPAEDRGDI--------VVILDPPRAGVNSTVLKWIRGMETIRRVVYISCEQKALE 517

Query: 330 RDLSILSTTHT-------IERLALF--DQFPYTRHMECGVLLVRK 365
           RD   L+   T        E  A F  D FP+T H+E   +L R+
Sbjct: 518 RDCPGLTKPSTKSYRGTPFEVTAAFAVDLFPHTHHVEMVAVLTRR 562


>gi|260945193|ref|XP_002616894.1| hypothetical protein CLUG_02338 [Clavispora lusitaniae ATCC 42720]
 gi|238848748|gb|EEQ38212.1| hypothetical protein CLUG_02338 [Clavispora lusitaniae ATCC 42720]
          Length = 535

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 32/223 (14%)

Query: 160 ICLDR--DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLL 214
           +CL R  + + E++       +++   N F Q N  I    LE++   L+   G    L+
Sbjct: 321 VCLTRRNNVITEKIG----EFLFQFEANEFFQNNRSILPTFLEFIKFHLSQIPGGYTHLI 376

Query: 215 ELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAAN---HVNNVKIVRMSSKE 268
           + YCG+G   + L+       +V  +EI+K S+  A++N   N    +N V+ V  +S  
Sbjct: 377 DAYCGSGFLGISLSDTLPQDGKVFGIEISKKSIAYAKHNAGINGLDRINKVQFVHGNSDS 436

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPH-ILYISCNPD 326
                +  R     KD          + ++P R G  ++    +++  P  I+YISCN  
Sbjct: 437 MFTDEQFLRSGVNSKDC--------VLLMNPSRKGSTEEFMAQLLEFKPKAIIYISCNVF 488

Query: 327 SLCRDLSIL-------STTHTIERLALFDQFPYTRHMECGVLL 362
           S  RDL+         S  + ++ +  FD +P T+H+E   +L
Sbjct: 489 SQARDLATFERLQRRSSVKYKVKTITGFDFYPQTKHVETVAIL 531


>gi|294011713|ref|YP_003545173.1| TrmA family RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292675043|dbj|BAI96561.1| TrmA family RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 401

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 17/150 (11%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           QG + +L+CG G F+L L +    V A E A+  V + +   AAN        RM++   
Sbjct: 260 QGAIADLFCGLGTFALALGQGRP-VYAAEAARDLVLSLKS--AANRAQR----RMAADH- 311

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSL 328
                  R+  R         RF  I +DPPR+G  +  + +  +  P I YISCNP S 
Sbjct: 312 -------RDLFRRPLTPAEIDRFAGIVIDPPRAGAQEQVMQLAASRVPVIAYISCNPASF 364

Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHME 357
            RD + +++  + +ER+    QF ++ H+E
Sbjct: 365 ARDAAHLVAGGYRLERVRPVGQFRWSTHVE 394


>gi|281491671|ref|YP_003353651.1| 23S rRNA m(5)U 1939 methyltransferase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375389|gb|ADA64902.1| 23S rRNA m(5)U 1939 methyltransferase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 460

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 22/154 (14%)

Query: 211 GDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           GD+ ++ Y G G   + +A    +V  +E+   +VE A+ N   N + N      ++++ 
Sbjct: 314 GDVVIDAYSGIGTIGISMADRVAKVYGMEVVLAAVENAKRNAQLNELENTHYEVGAAEKI 373

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCN 324
                 E              +   IFVDPPR GLD+   G ++A        I+YISCN
Sbjct: 374 MPKWLSE------------GIKPDVIFVDPPRKGLDE---GFIKAAAMMNPRRIVYISCN 418

Query: 325 PDSLCRD-LSILSTTHTIERLALFDQFPYTRHME 357
           P +  RD +   +  + ++++   D FP T H+E
Sbjct: 419 PATFARDVVRFEAEGYLLDKVQPVDLFPQTHHIE 452


>gi|207856315|ref|YP_002242966.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|226725412|sp|B5QYK4|RUMB_SALEP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|206708118|emb|CAR32411.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 375

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRR 374


>gi|297624387|ref|YP_003705821.1| (Uracil-5)-methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297165567|gb|ADI15278.1| (Uracil-5)-methyltransferase [Truepera radiovictrix DSM 17093]
          Length = 424

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 21/176 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F QPN       L   LA   G     L+LY G G   + LA  F+RV+A+E+ + SV
Sbjct: 258 TGFAQPNP-AAASRLYAELARWAGEGRFALDLYAGGGAIGMHLAASFERVVALELDRSSV 316

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                        +   + +++ EF Q     R    L + ++       I V+PPR+GL
Sbjct: 317 --------VRGARDAARLGLANLEFRQG--DARRLGALPEAEL-------ICVNPPRAGL 359

Query: 305 DDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHME 357
              T   + A     +LY+SC+  +  RD + L      + RL  FD +P T H+E
Sbjct: 360 AKGTRAALSASAATRLLYVSCDVATFSRDAAQLCAAGWRLTRLEPFDFYPQTHHLE 415


>gi|168466499|ref|ZP_02700361.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195630967|gb|EDX49553.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
          Length = 376

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + I+R+ LFD FP+T H E   LL R 
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRRS 375


>gi|17545928|ref|NP_519330.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia solanacearum
           GMI1000]
 gi|20140047|sp|Q8Y035|RUMA_RALSO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|17428223|emb|CAD14911.1| probable rna methyltransferase protein [Ralstonia solanacearum
           GMI1000]
          Length = 450

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 27/197 (13%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L       GD LL+L+CG GNF+L +A     
Sbjct: 259 GITMPFKPTD--FTQVNHQINRVLMSRALKLLDARPGDRLLDLFCGIGNFTLPMATRGCE 316

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E ++     A  N   N ++          + T A R   E +   DI     RF 
Sbjct: 317 VMGIEGSEALTTRALANAQHNGLDG---------KTTFACRNLFEVS-ADDIAALG-RFD 365

Query: 294 TIFVDPPRSG---LDDATVGMVQAYPH--------ILYISCNPDSLCRDLSIL--STTHT 340
              VDPPR G   +  A   + Q            I+Y+SCNP +L RD  +L     + 
Sbjct: 366 RWLVDPPREGALAVSKAVAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 425

Query: 341 IERLALFDQFPYTRHME 357
           +    + + FP+T H+E
Sbjct: 426 LAGAGVVNMFPHTSHVE 442


>gi|46138691|ref|XP_391036.1| hypothetical protein FG10860.1 [Gibberella zeae PH-1]
          Length = 540

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 23/162 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFT 270
           L++ Y G+G F++ LA  F   + ++IA  S+  A  N   N +     K +   + E  
Sbjct: 391 LIDAYSGSGLFTVTLASLFQHSIGIDIAADSIAYASRNATLNGMGEDRCKFIAADAGELF 450

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           +++     +NR + +         + +DPPR G D   +  ++ +    +LY+SCN  + 
Sbjct: 451 KSV----TYNRDETV---------VVLDPPRKGCDADFLNQLRKFGPRRVLYVSCNVHTQ 497

Query: 329 CRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +L         + IE L  FD FP T H+E   +L R
Sbjct: 498 ARDVGVLVRGEGEGERYEIESLRGFDFFPQTGHVEGVAILNR 539


>gi|319762887|ref|YP_004126824.1| RNA methyltransferase, trma family [Alicycliphilus denitrificans
           BC]
 gi|317117448|gb|ADU99936.1| RNA methyltransferase, TrmA family [Alicycliphilus denitrificans
           BC]
          Length = 483

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     
Sbjct: 273 GITMPFKPTD--FTQVNPHINRVLVTRALRLLDAREDERVIDWFCGLGNFTLPIATRSRE 330

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL VE ++  V  +R N   N         +++  F         F    ++ I      
Sbjct: 331 VLGVEGSEALVARSRENYQKNQAQRQAGKALAATNFVA----RNLFEMTPEVLIADGAAD 386

Query: 294 TIFVDPPRSG----------LDDATVGMVQAYP------------HILYISCNPDSLCRD 331
              VDPPR G          +  A +G  +A P             I+Y+SCNP +L RD
Sbjct: 387 KWLVDPPREGAFALSKALADIHQARLGAAEAPPLPAGHERWQPPRRIVYVSCNPATLARD 446

Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +L     +      + + FP+T H+E   +  R
Sbjct: 447 AGLLVHQAGYRCAAAGVVNMFPHTAHVESMAVFER 481


>gi|330824966|ref|YP_004388269.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Alicycliphilus
           denitrificans K601]
 gi|329310338|gb|AEB84753.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Alicycliphilus
           denitrificans K601]
          Length = 483

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     
Sbjct: 273 GITMPFKPTD--FTQVNPHINRVLVTRALRLLDAREDERVIDWFCGLGNFTLPIATRSRE 330

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL VE ++  V  +R N   N         +++  F         F    ++ I      
Sbjct: 331 VLGVEGSEALVARSRENYQKNQAQRQAGKALAATNFVA----RNLFEMTPEVLIADGAAD 386

Query: 294 TIFVDPPRSG----------LDDATVGMVQAYP------------HILYISCNPDSLCRD 331
              VDPPR G          +  A +G  +A P             I+Y+SCNP +L RD
Sbjct: 387 KWLVDPPREGAFALSKALADIHQARLGAAEAPPLPAGHERWQPPRRIVYVSCNPATLARD 446

Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +L     +      + + FP+T H+E   +  R
Sbjct: 447 AGLLVHQAGYRCAAAGVVNMFPHTAHVESMAVFER 481


>gi|260906561|ref|ZP_05914883.1| putative tRNA (Uracil-5-)-methyltransferase [Brevibacterium linens
           BL2]
          Length = 426

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 25/156 (16%)

Query: 213 LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           + +LYCG G   +  A     R+  VE AK ++E A+ N      N              
Sbjct: 292 ITDLYCGVGLLGISAATATGARLYGVEGAKSAIENAKVNAKGLTAN------------FD 339

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLC 329
           A R +R   ++ + D+       I +DPPR+G   A T  ++++    I+Y+SC+  +L 
Sbjct: 340 ASRADRA--KIPNSDV-------IILDPPRAGAGKAVTRALIESSATTIVYVSCDAATLA 390

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL++L +    I+ L+ FD FP T H+E   +L R
Sbjct: 391 RDLAVLVNGGFAIDSLSGFDLFPLTSHVETVTVLRR 426


>gi|5738225|gb|AAD50302.1| RNA methyltransferase homolog [Vibrio cholerae]
          Length = 110

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 20/124 (16%)

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSG 303
           A +N   N +NNV         F QA       N  +D+   S+   +F  + +DP R+G
Sbjct: 1   ATHNAKLNQINNVA--------FYQA-------NLEQDMTSASWAQQKFAKVLLDPARAG 45

Query: 304 LDDATVGM-VQAYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVL 361
            +     + V     ++Y+SCNP +L RD  S+LS    +E+L + D FP+T H+E   L
Sbjct: 46  AEGIVDQLSVLGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMAL 105

Query: 362 LVRK 365
            V+K
Sbjct: 106 FVKK 109


>gi|114799366|ref|YP_761460.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Hyphomonas
           neptunium ATCC 15444]
 gi|114739540|gb|ABI77665.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Hyphomonas
           neptunium ATCC 15444]
          Length = 416

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 23/219 (10%)

Query: 154 RANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           RA   ++ L+ + V      RL +   +L+       F Q +A     +   VL    G 
Sbjct: 215 RAGFARVSLEGEDVLTERPPRLPIGAASLL--PPPGGFLQASAEAETEIARLVLGHLGGA 272

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +    +L+ G G F+L LA     V A E  +P++EA     AAN    +K V    ++ 
Sbjct: 273 K-HAADLFSGCGTFALRLAERIP-VFAAESGRPAIEA--LRAAANAAPGLKPVTADVRDL 328

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSL 328
            +        N L  +++   RF  + +DPPR+G       + ++  P + Y+SC+P +L
Sbjct: 329 FR--------NPLAAVEL--ARFDGLVLDPPRAGASAQAAEIARSTVPRVAYVSCDPATL 378

Query: 329 CRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
            RDL +++   + + R    DQF ++ H+E  V L+ KP
Sbjct: 379 ARDLRALVDGGYRLLRAHPVDQFLWSAHVEA-VALLEKP 416


>gi|227496018|ref|ZP_03926329.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
 gi|226834411|gb|EEH66794.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
          Length = 323

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 30/195 (15%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           R  +   +E S ++P A +    L+            +LELY G G F+L LA     V 
Sbjct: 152 RGALTGTLEGSSSRPGA-VRAEGLK------------VLELYSGAGLFTLPLASLGGEVR 198

Query: 236 AVEIAKPSVEAARYNIAA---NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           ++E ++ +V  AR N+ A    H+   ++   S  E        R F    D        
Sbjct: 199 SLEGSEQAVRDARRNLHAFPGAHLFAGRVTPASVAELG------RGFGEAGD-----QAA 247

Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
             + +DPPR G   A V  V       ++ ++C+P +  RDL ++L+  +++  +   D 
Sbjct: 248 DVVVLDPPRKGAGRAVVEAVADLGPRRVVLVACDPAAAARDLGALLARGYSLASMCALDM 307

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H E  ++L R
Sbjct: 308 FPHTHHFETLIVLDR 322


>gi|308234194|ref|ZP_07664931.1| 23S rRNA m(5)U-1939 methyltransferase [Atopobium vaginae DSM 15829]
 gi|328944452|ref|ZP_08241914.1| hypothetical protein HMPREF0091_11139 [Atopobium vaginae DSM 15829]
 gi|327491036|gb|EGF22813.1| hypothetical protein HMPREF0091_11139 [Atopobium vaginae DSM 15829]
          Length = 609

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 19/161 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++ YCG G   + +A       V+  +  + S+E A+ N   NH+    +   S ++ T
Sbjct: 367 IMDAYCGCGTIGICVASQIKNAVVIGFDQVEDSIERAKKNRRLNHLKTRCV--YSCEDAT 424

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNP 325
           + M+   +F    +      RF+ I +DPPR+G   +T   ++A        I YISCNP
Sbjct: 425 RFMQ---DFAYASN---GVSRFEAIIMDPPRAG---STPEFIKAAASLRPKCIAYISCNP 475

Query: 326 DSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +  RDL+      +++E +   D FP+T H E   LL R+
Sbjct: 476 QTQVRDLAEFYRCGYSVESITPVDMFPHTPHTESVCLLTRQ 516


>gi|299067260|emb|CBJ38457.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Ralstonia
           solanacearum CMR15]
          Length = 482

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 27/197 (13%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L       GD LL+L+CG GNF+L +A     
Sbjct: 291 GITMPFKPTD--FTQVNHQINRVLMSRALKLLDARPGDRLLDLFCGIGNFTLPMATRGCE 348

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E ++     A  N   N ++          + T A R   E +   DI     RF 
Sbjct: 349 VMGIEGSETLTTRALANAQHNGLD---------AKVTFACRNLFEVS-ADDIAALG-RFD 397

Query: 294 TIFVDPPRSG---LDDATVGMVQAYPH--------ILYISCNPDSLCRDLSIL--STTHT 340
              VDPPR G   +  A   + Q            I+Y+SCNP +L RD  +L     + 
Sbjct: 398 RWLVDPPREGALAVSKAVAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYR 457

Query: 341 IERLALFDQFPYTRHME 357
           +    + + FP+T H+E
Sbjct: 458 LAGAGVVNMFPHTSHVE 474


>gi|34222389|ref|NP_892029.2| tRNA (uracil-5-)-methyltransferase homolog A [Homo sapiens]
 gi|51173878|ref|NP_073564.3| tRNA (uracil-5-)-methyltransferase homolog A [Homo sapiens]
 gi|51316479|sp|Q8IZ69|TRM2A_HUMAN RecName: Full=tRNA (uracil-5-)-methyltransferase homolog A;
           AltName: Full=HpaII tiny fragments locus 9c protein
 gi|33869861|gb|AAH17184.2| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo
           sapiens]
 gi|39644624|gb|AAH13352.2| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo
           sapiens]
 gi|47678239|emb|CAG30240.1| Em:AC006547.2 [Homo sapiens]
 gi|80477429|gb|AAI08252.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo
           sapiens]
 gi|109451268|emb|CAK54495.1| Em:AC006547.C22.2 [synthetic construct]
 gi|109451846|emb|CAK54794.1| Em:AC006547.C22.2 [synthetic construct]
 gi|119623400|gb|EAX02995.1| HpaII tiny fragments locus 9C, isoform CRA_a [Homo sapiens]
 gi|261857608|dbj|BAI45326.1| TRM2 tRNA methyltransferase 2 homolog A [synthetic construct]
          Length = 625

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ VE+   +VE AR N   N ++NV+     +++    
Sbjct: 436 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 495

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    +  ++   +   +LY+SCNP +  
Sbjct: 496 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAM 544

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368
                LCR  S  +        +    D FP T H E  +L   V  P+G
Sbjct: 545 GNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 594


>gi|120403465|ref|YP_953294.1| (Uracil-5)-methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119956283|gb|ABM13288.1| (Uracil-5)-methyltransferase [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 19/154 (12%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVE-IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +LY G G F+  LAR      AV  +      +     A   + NV +V       T ++
Sbjct: 257 DLYGGAGVFAAALARGVGDTGAVTTVDTSRGASRAARAALADLGNVSVV-------TDSV 309

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331
           RR     R         R     +DPPR+G     V ++ A   P I++I C   S  RD
Sbjct: 310 RRALTGQRT--------RADVAVLDPPRTGAGREVVDLLAAAEVPRIIHIGCEAASFARD 361

Query: 332 LSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + + L   + +E L +FD FP T H+EC  +L R
Sbjct: 362 VGLYLGHGYAVEELRVFDSFPLTHHVECVAVLTR 395


>gi|289706908|ref|ZP_06503245.1| TRAM domain protein [Micrococcus luteus SK58]
 gi|289556343|gb|EFD49697.1| TRAM domain protein [Micrococcus luteus SK58]
          Length = 490

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 10/196 (5%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD- 232
           G T  +R   + F Q +      +++ VL   +   G ++ +LY G G FS  LA     
Sbjct: 284 GGTKRFRVTGDGFWQVHQHAPATLVDAVLEDARVEPGQVVADLYGGAGLFSAYLADAVGP 343

Query: 233 --RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             RV +VE ++ + + AR N+  +      ++   + +   +  +  E   + D  +   
Sbjct: 344 EGRVYSVEASRQASKDARRNL--HDQPQASVLNGPTDKVLGSWLKYPE-RPVADGGLGGA 400

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
              T+ +DPPR+G     +  + A     I+Y+SC+P S  RDL+ L    + +ER  +F
Sbjct: 401 ALDTVVLDPPRAGAGRRAIERILALEPGRIVYVSCDPASFARDLAWLRDGGYEVERARVF 460

Query: 348 DQFPYTRHMECGVLLV 363
           D +P T H+E   +LV
Sbjct: 461 DLYPDTHHLESVTVLV 476


>gi|229820435|ref|YP_002881961.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333]
 gi|229566348|gb|ACQ80199.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333]
          Length = 405

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 37/252 (14%)

Query: 135 AIRLRDALHAR---KYQIQLIGRANKTKICL--------DRDYVDERLTVA-GRTLIYRQ 182
           A+R  DAL  R     ++ L+  +    + L        DR  V ER+ +  GR   YR 
Sbjct: 170 ALREHDALRRRWEPGSRLDLVAGSEGAPLVLLDGAPVRGDRRTVRERVELGDGRAWRYRV 229

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVE 238
             + F Q +      ++E VL A +   G+ +L+LY G G F+L LA       +V AVE
Sbjct: 230 AGSGFWQVHRAAPTVLVEAVLDAAQPQAGERVLDLYSGAGLFTLPLADAVGADGQVAAVE 289

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               +V  AR N+  +    V +   S  +   A           D+         + +D
Sbjct: 290 GDPAAVRDARRNL--HDRGQVDLHGGSVADVLDAG-----VGAGADL---------VILD 333

Query: 299 PPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRH 355
           PPR+G   D    +    P  I+Y++C+P +L RDL + +   + +  L   D FP+T H
Sbjct: 334 PPRAGAGRDVVEAVTGRRPRRIVYVACDPAALARDLRLAADAGYALTSLDAVDLFPHTHH 393

Query: 356 MECGVLLVRKPS 367
           +E   L V +P+
Sbjct: 394 IEA--LAVLEPA 403


>gi|325981486|ref|YP_004293888.1| (Uracil-5)-methyltransferase [Nitrosomonas sp. AL212]
 gi|325531005|gb|ADZ25726.1| (Uracil-5)-methyltransferase [Nitrosomonas sp. AL212]
          Length = 388

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 24/179 (13%)

Query: 187 FTQPNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           F Q N   N  M  W+     +    G ++EL+CG+GN + ++A                
Sbjct: 213 FKQGNTSQNAWMQSWLKEKLVSTSCSGKVVELFCGSGNLTQIIA---------------- 256

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE-FNRL--KDIDIHSYRFKTIFVDPPR 301
           E+   +I A   ++  I ++ ++ F + + ++   F+ L  K +       K + +DPPR
Sbjct: 257 ESNCTSIIALESDDNAIQQLKTRNFDKVIPQKYNLFDPLVWKKLQQKINDAKILVLDPPR 316

Query: 302 SGLD--DATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +GL   +      +    I+Y SCNP++  RD          I+ + L D FP+T H+E
Sbjct: 317 AGLKKHNGFFNGFRTLKTIIYFSCNPETFARDAWFFYQNGFLIDEIQLIDLFPHTHHVE 375


>gi|114685137|ref|XP_001166807.1| PREDICTED: HpaII tiny fragments locus 9C isoform 1 [Pan
           troglodytes]
 gi|114685139|ref|XP_001166936.1| PREDICTED: HpaII tiny fragments locus 9C isoform 2 [Pan
           troglodytes]
 gi|114685141|ref|XP_001167055.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 5
           [Pan troglodytes]
          Length = 625

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ VE+   +VE AR N   N ++NV+     +++    
Sbjct: 436 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 495

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    +  ++   +   +LY+SCNP +  
Sbjct: 496 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAM 544

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368
                LCR  S  +        +    D FP T H E  +L   V  P+G
Sbjct: 545 GNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 594


>gi|197265862|ref|ZP_03165936.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197244117|gb|EDY26737.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 375

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ +     +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSATELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+R+ LFD FP+T H E   LL R
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|153007894|ref|YP_001369109.1| (Uracil-5)-methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151559782|gb|ABS13280.1| (Uracil-5)-methyltransferase [Ochrobactrum anthropi ATCC 49188]
          Length = 413

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 16/183 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M+  VL+   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATADAEEAMVSLVLSHL-GKAKRVADLFCGVGTFALRIAEK-SAVHAVE--NDAL 300

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A  +    HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 301 ALAALDRGVRHVQGLKPVSVERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ +SCNP +L RDL+IL    + + R+   DQF ++ H+E    L
Sbjct: 351 EEQALELAKSKVEKVVAVSCNPVTLARDLAILVKGGYRVTRVTPIDQFLWSPHVEAVATL 410

Query: 363 VRK 365
           V+K
Sbjct: 411 VKK 413


>gi|83769956|dbj|BAE60091.1| unnamed protein product [Aspergillus oryzae]
          Length = 577

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 31/198 (15%)

Query: 185 NSFTQPNAGINVHMLEWV--LAATKGIQGD------LLELYCGNGNFSLVLARHFDRVLA 236
            +F Q N  I     E++  LA  K  Q D      LL+ Y G+G F++ L+  F   L 
Sbjct: 391 GAFFQNNNSILSGFTEYIRQLALPKHTQQDSKPIKYLLDAYSGSGLFTITLSPLFKSSLG 450

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           V+++  S+ +AR N  AN + N       +                KD+     +   + 
Sbjct: 451 VDVSGDSIVSARENARANSLPNTGFAAADAATL------------FKDVPYPPDQ-TLLV 497

Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-------STTHTIERLALF 347
           +DPPR G  D  +  +  +    ++Y+SCN  +  RD++++       +    IE +  F
Sbjct: 498 IDPPRKGCSDDFLRQLLTFGPRRVVYVSCNVHTQARDVAVMVQGDKEKNIRFEIESIRGF 557

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP T H+E GV ++ K
Sbjct: 558 DFFPQTGHVE-GVAILNK 574


>gi|317125054|ref|YP_004099166.1| 23S rRNA m(5)U-1939 methyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315589142|gb|ADU48439.1| 23S rRNA m(5)U-1939 methyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 418

 Score = 60.5 bits (145), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 24/254 (9%)

Query: 121 LIYHRLLDDAWREC-AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           ++   +LD  W  C A+ + DA H  +  +  +  A           V ER+        
Sbjct: 181 VVGSGVLDTDWSGCTAVDVVDAAHPEEPVLVPLPLAKGLDA--GGGLVGERVVDGEWAGE 238

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VL 235
           Y      F Q + G     L  V++  +   GD +++LY G+G F++ L         VL
Sbjct: 239 YVVAARGFWQVHPGAASTFLSRVVSLLEPAPGDRVIDLYAGSGLFTMRLGELVAPDGFVL 298

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE  + +V     N    H+ NV+          +  R ERE   L    I +     +
Sbjct: 299 GVEGDRAAVANGALNT--EHLENVEW---------RTNRVERELASLVAQGISA---DLV 344

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
            +DPPR+G   A +  + A     ++Y++C+P +L RD+       + +  +  +D FP 
Sbjct: 345 VLDPPRTGAGPAVMADLAALQPRRVVYVACDPAALARDVQAAGAHGYRLAHVEAWDAFPM 404

Query: 353 TRHMECGVLLVRKP 366
           T H+EC  +L   P
Sbjct: 405 THHVECIAVLEPGP 418


>gi|313139861|ref|ZP_07802054.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132371|gb|EFR49988.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 437

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINV----HMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E +TV GR   Y    N F Q +    V    H+++    A  G+    + +LY G G F
Sbjct: 240 ETVTVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLF 299

Query: 224 SLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE  K +V+ A+ N+ A ++ +V   R      T          
Sbjct: 300 TLPLATMIAERTRMLSVEGGKTAVKNAQRNLRALNLPDVD-ARCGDVSAT---------- 348

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-ST 337
            L  +  H  R   + +DPPR+G        +       ++Y++C+P SL RD + L S 
Sbjct: 349 -LAHVPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISL 407

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + +  +  +D +P T H+E      R
Sbjct: 408 GYRLSDIRAYDIYPMTHHVETVAWFTR 434


>gi|329667719|gb|AEB93667.1| RNA methyltransferase, TrmA family [Lactobacillus johnsonii DPC
           6026]
          Length = 459

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 14/153 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   ++ +     V+ +E    +V  A+ N   NHV N + ++ + ++    
Sbjct: 314 LIDAYAGVGTLGILASDQVRLVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL--- 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                    L ++         + VDPPR+GL    +  +++  P   +Y+SCNP +L +
Sbjct: 371 ---------LPELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAK 421

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           DL +LS  + +  +   D  P T   E    LV
Sbjct: 422 DLVLLSDAYDVRVIQPVDMMPQTPRWEGVTKLV 454


>gi|303232532|ref|ZP_07319218.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium
           vaginae PB189-T1-4]
 gi|302481319|gb|EFL44393.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium
           vaginae PB189-T1-4]
          Length = 539

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 15/176 (8%)

Query: 204 AATKGIQGDL--LELYCGNGNFSLVLARHFDRVLAVEI--AKPSVEAARYNIAANHVNNV 259
           A  +  QG L  ++ YCG G   + LA   +  + V I   + S+E AR N   NH+ + 
Sbjct: 362 AKNQHTQGMLRVMDAYCGCGTIDICLASQIEDAVVVGIDQVEDSIERARRNRKLNHLRSR 421

Query: 260 KIVRMSS-----KEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSG-LDDATVG 310
            +  +       + F  A     E +   +  + +    RF  I +DPPR+G   +  +G
Sbjct: 422 AVYSLDDATHFMQNFVYASSVTSELSHEDEAAMSNGGRPRFDAIIMDPPRAGSTPEFILG 481

Query: 311 MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIER-LALFDQFPYTRHMECGVLLVR 364
                P  I+YISCNP +  RDL        + R +   D FP+T H+E  VL+ R
Sbjct: 482 ACALNPTCIVYISCNPVTQERDLHEFYAHGYVPRSITPVDMFPHTPHVESVVLMSR 537


>gi|325526959|gb|EGD04415.1| 23S rRNA m(5)U1939 methyltransferase [Burkholderia sp. TJI49]
          Length = 454

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 82/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 276 FTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREVMGIEGSEALTT 335

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R    F    D DI +   F    +DPPR G 
Sbjct: 336 RALANARENGVDG---------HTTFACR--NLFEVTAD-DIRALGAFDKFLIDPPREGA 383

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 384 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 443

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 444 HVESIALFER 453


>gi|167836388|ref|ZP_02463271.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           thailandensis MSMB43]
          Length = 467

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 24/191 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR--HFDRVLAVEIAKPS 243
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR      V+ +E ++  
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREGEVVGIEGSETL 346

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              A  N   N V+           F      E   + L+ +      F    +DPPR G
Sbjct: 347 TSRALANAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLIDPPREG 395

Query: 304 L--------DDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353
                    + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP+T
Sbjct: 396 ALAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHT 455

Query: 354 RHMECGVLLVR 364
            H+E   L  R
Sbjct: 456 SHVESIALFER 466


>gi|302838263|ref|XP_002950690.1| hypothetical protein VOLCADRAFT_33590 [Volvox carteri f.
           nagariensis]
 gi|300264239|gb|EFJ48436.1| hypothetical protein VOLCADRAFT_33590 [Volvox carteri f.
           nagariensis]
          Length = 211

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 25/178 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A  G    LL++ CG G   + LA    +V+ V+    ++E AR N A N + N + V  
Sbjct: 41  AAAGPSTLLLDICCGTGTIGITLAGRVSKVIGVDSVASAIEDARVNAALNGITNAEFVAG 100

Query: 265 SSKEFTQAM--RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---L 319
            +++    +      E +     D+          DPPR+GL    +  +     I   +
Sbjct: 101 KAEDALPGILAAHAGEGSPYGPGDV------VAVADPPRAGLHRTVLRALLGCERIRRLV 154

Query: 320 YISCNPDSLCRDLSILSTT-------------HTIERLALFDQFPYTRHMECGVLLVR 364
           ++SCNPDSL +++  L                  ++ LA+ D FP+T H+E  +LL R
Sbjct: 155 FVSCNPDSLVQNVVALCCPPGRAGPGCSYTPFRPVKALAV-DLFPHTSHVEAVMLLER 211


>gi|269217993|ref|ZP_06161847.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269212928|gb|EEZ79268.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 436

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 19/161 (11%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A+  G   +L +LYCG G F+L  A    RV  VE++  +VE+AR + AA  ++   IV 
Sbjct: 276 ASAGGRSIELWDLYCGVGGFALHCAGPGRRVTGVELSAQAVESARASAAAAGIDADFIV- 334

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHILYIS 322
                   ++   RE   L   D+       + V+PPR G+   A+         +LY S
Sbjct: 335 ------GDSLSAARE---LGTADV-------VVVNPPRRGIGGLASWIDASQIRFVLYSS 378

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           CNP SL  D++ + +   + R  +FD FP+T H E  VLL 
Sbjct: 379 CNPASLAADVASMPSFRPV-RARVFDMFPHTGHTETLVLLA 418


>gi|224282703|ref|ZP_03646025.1| hypothetical protein BbifN4_02644 [Bifidobacterium bifidum NCIMB
           41171]
          Length = 420

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINV----HMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E +TV GR   Y    N F Q +    V    H+++    A  G+    + +LY G G F
Sbjct: 223 ETVTVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLF 282

Query: 224 SLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE  K +V+ A+ N+ A ++ +V   R      T          
Sbjct: 283 TLPLATMIAERTRMLSVEGGKTAVKNAQRNLRALNLPDVD-ARCGDVSAT---------- 331

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-ST 337
            L  +  H  R   + +DPPR+G        +       ++Y++C+P SL RD + L S 
Sbjct: 332 -LAHVPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISL 390

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + +  +  +D +P T H+E      R
Sbjct: 391 GYRLSDIRAYDIYPMTHHVETVAWFTR 417


>gi|49475234|ref|YP_033275.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238039|emb|CAF27246.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 417

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 120/271 (44%), Gaps = 59/271 (21%)

Query: 135 AIRLRDAL---HARKYQIQLIGRANKTKI----CLDRD-------------YVDERLTVA 174
           +I+L  AL   H +++Q+ +    N   +    C+ RD             Y   RL+V 
Sbjct: 158 SIKLLCALVGNHTKRFQVTVTSVENGLDVAFNGCVVRDEHIRQQMIHTALAYGMTRLSVE 217

Query: 175 GRTLIYRQ------------------IENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           G  L+ R+                  ++ +F   N   N+ +L ++  A   +     +L
Sbjct: 218 GEILVEREKPLVYFGDVCVEFPAGGFLQATFEAENIMGNI-ILAYLEKAKNAV-----DL 271

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           + G G F+L +A+  + V AVE  + ++  A  + AA     +K +    ++  +     
Sbjct: 272 FSGLGTFTLRMAKKMN-VHAVENNETAL--ANLDRAARFATGLKTITCERRDLFRRPLSA 328

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL 335
           +E +           F+ +  DPPR+G  +    + +   P ++ ISCNP +  RDLS+L
Sbjct: 329 KELSC----------FECVVFDPPRAGAQEQVRELAKTTIPRVVTISCNPVTFARDLSLL 378

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +  +TIE++   DQF ++ H+E   LL ++
Sbjct: 379 VAGGYTIEKIIPIDQFLWSPHVEIVALLSKR 409


>gi|296129556|ref|YP_003636806.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas flavigena
           DSM 20109]
 gi|296021371|gb|ADG74607.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas flavigena
           DSM 20109]
          Length = 420

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222
           R  V ER++VAG   +YR     F Q +      +   VL A   + G  +L+LY G G 
Sbjct: 224 RAAVRERVSVAGVEHVYRVAAAGFWQVHREAPALLASRVLEAVGDVAGATVLDLYSGAGL 283

Query: 223 FSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           FS  LA       R++AVE  + +V  AR N      ++   V + + +    +   R  
Sbjct: 284 FSSPLADAVGTDGRLVAVEGDERAVRDARRN-----AHDRPQVELHAGDVADVLTGRRGA 338

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                          + +DPPR+G     V  V A     ++Y++C+P +L RD+++L+ 
Sbjct: 339 VAPA------AAADVVVLDPPRTGAGRRVVEAVAALRPARVVYVACDPAALARDIALLAE 392

Query: 338 THTIE-RLALFDQFPYTRHMECGVLLVR 364
               +  +   D FP T H+E   +L R
Sbjct: 393 RGWSDVTVTGLDLFPMTHHVEAVAVLTR 420


>gi|92113761|ref|YP_573689.1| RNA methyltransferase [Chromohalobacter salexigens DSM 3043]
 gi|91796851|gb|ABE58990.1| 23S rRNA m(5)U-1939 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
          Length = 475

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 57/364 (15%)

Query: 27  AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL 86
              +P +++   E + YR RA   +  D +   H+ F  +  E + ID        I++ 
Sbjct: 133 GLTLPEIEVLAGEGLAYRRRARLGVKCDAEGTPHLGFRARGSEHL-ID--------IDSC 183

Query: 87  MIEMMATIRLEPLLRAKLFQIDY--------LTSQSDQAIVTLIYHRLL--DDA-WRECA 135
           ++      RL   LRA L Q++         L + ++ A V +   R +  D+A WR  A
Sbjct: 184 VVLEPVLSRLIAPLRACLVQLEAPRRVGHIELIATAEGACVVVRQLREVPGDEARWRRFA 243

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLD------RDYVDERLTVAGRTLIYRQIENSFTQ 189
                     ++ + L  R  +    L        + +   L +   TL    +   F Q
Sbjct: 244 A---------EHDVTLAWRVGREAPTLRWLHAPRGEALHVTLVLDDTTLSLGCVPGDFLQ 294

Query: 190 PNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            NA +N  ++   LA  A +G +  +L+L+ G GNF+L LA     +  +E +   VE  
Sbjct: 295 INADVNARLVRTALAWLAPRGEE-RVLDLFAGVGNFTLALAPRVASITGIEGSPAMVERL 353

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                A++     + ++ +++   A     +   +  +D        + +DPPR G +  
Sbjct: 354 -----ADNARRAGLHQVGAQQSDLAT----QVPEVAAVDW-------VIMDPPRGGAEAL 397

Query: 308 TVGMVQA-YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR- 364
              +  +    +LY+SC+P +L RD +  +   + I+R AL D FP+T H+E  +LL R 
Sbjct: 398 CRALADSPVTTLLYVSCDPAALARDAARLVQGGYRIQRAALADMFPHTAHLESMLLLTRD 457

Query: 365 KPSG 368
            P G
Sbjct: 458 TPRG 461


>gi|238496117|ref|XP_002379294.1| tRNA(m5U54)methyltransferase [Aspergillus flavus NRRL3357]
 gi|317147368|ref|XP_001822093.2| tRNA(m5U54)methyltransferase [Aspergillus oryzae RIB40]
 gi|220694174|gb|EED50518.1| tRNA(m5U54)methyltransferase [Aspergillus flavus NRRL3357]
          Length = 530

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 31/198 (15%)

Query: 185 NSFTQPNAGINVHMLEWV--LAATKGIQGD------LLELYCGNGNFSLVLARHFDRVLA 236
            +F Q N  I     E++  LA  K  Q D      LL+ Y G+G F++ L+  F   L 
Sbjct: 344 GAFFQNNNSILSGFTEYIRQLALPKHTQQDSKPIKYLLDAYSGSGLFTITLSPLFKSSLG 403

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           V+++  S+ +AR N  AN + N       +                KD+     +   + 
Sbjct: 404 VDVSGDSIVSARENARANSLPNTGFAAADAATL------------FKDVPYPPDQ-TLLV 450

Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-------STTHTIERLALF 347
           +DPPR G  D  +  +  +    ++Y+SCN  +  RD++++       +    IE +  F
Sbjct: 451 IDPPRKGCSDDFLRQLLTFGPRRVVYVSCNVHTQARDVAVMVQGDKEKNIRFEIESIRGF 510

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP T H+E GV ++ K
Sbjct: 511 DFFPQTGHVE-GVAILNK 527


>gi|220912404|ref|YP_002487713.1| deoxyribonuclease/rho motif-related TRAM [Arthrobacter
           chlorophenolicus A6]
 gi|219859282|gb|ACL39624.1| deoxyribonuclease/rho motif-related TRAM [Arthrobacter
           chlorophenolicus A6]
          Length = 465

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 23/157 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + +LY G G F+ VLA        VL+VE A  +   AR N+ A     V+IV+      
Sbjct: 323 VADLYAGAGLFTAVLADAVGETGAVLSVEGAPGTSRDARKNLHA--APQVEIVQGR---- 376

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327
            + + R++  N           F  + +DPPR+G   A V  +  A+P  I Y+SC+P S
Sbjct: 377 VERVLRQKPRN-----------FDALVLDPPRAGAGKAVVRQLADAHPRAIAYVSCDPAS 425

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             RD+S        +  L  FD +P+T H+E   LL 
Sbjct: 426 FARDVSYFRDAGWELAGLRAFDIYPHTHHLETVALLT 462


>gi|187928146|ref|YP_001898633.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia pickettii
           12J]
 gi|226725385|sp|B2U9U3|RUMA_RALPJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|187725036|gb|ACD26201.1| RNA methyltransferase, TrmA family [Ralstonia pickettii 12J]
          Length = 450

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 29/198 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L       GD LL+L+CG GNF+L +A     
Sbjct: 259 GITMPFKPTD--FTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRARE 316

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RF 292
           V+ +E ++     A  N   N ++            T+     R    +   D+ +  +F
Sbjct: 317 VMGIEGSEALTTRALANAQHNGLH------------TKTSFACRNLFEVSADDVAALGKF 364

Query: 293 KTIFVDPPRSG---LDDATVGMVQAY--------PHILYISCNPDSLCRDLSIL--STTH 339
               +DPPR G   +  A   + Q+           I+Y+SCNP +L RD  +L     +
Sbjct: 365 DRWLIDPPREGALAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAGY 424

Query: 340 TIERLALFDQFPYTRHME 357
            +    + + FP+T H+E
Sbjct: 425 RLAGAGVVNMFPHTSHVE 442


>gi|118098389|ref|XP_415080.2| PREDICTED: similar to HpaII tiny fragments locus 9C [Gallus gallus]
          Length = 602

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 40/217 (18%)

Query: 173 VAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATK-----GIQGDLLELYCG 219
           VAG   IY ++         ++F Q    +N    E + AA +       +  +L++ CG
Sbjct: 345 VAGDKYIYEELLGLKFRISPHAFFQ----VNTQAAEVLYAAIREWAQLSQESTVLDICCG 400

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   + LA+   +V+ +E+ + +V+ A+ N   N ++N++     +++   ++      
Sbjct: 401 TGTIGISLAKKVKKVIGIELCQEAVQDAKANAQINELSNIEFHCGKAEDIVPSL------ 454

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDS-------LC 329
                I+I + +     VDPPR+GL    +  +   +    ++Y+SCNP +       LC
Sbjct: 455 -----INILAPQNLITIVDPPRAGLHSRVILAIRRAEQLKKLIYVSCNPRAAMNNFVDLC 509

Query: 330 RDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           R  S  +        +    D FP T+H E  +L  R
Sbjct: 510 RAPSNRVKGAAFRPVKAMAVDLFPQTKHCELLILFER 546


>gi|68481902|ref|XP_715090.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
 gi|46436698|gb|EAK96056.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
          Length = 588

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 99/202 (49%), Gaps = 21/202 (10%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232
            +++   N F Q N  I   +L+++   +  +     +L++ YCG G F + L++ F+  
Sbjct: 392 FLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIALSKSFNEN 451

Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            ++  +E+ + +++ A +N   N ++  + V+  S + +     E+     K   I S +
Sbjct: 452 TKIFGIELVEQAIKYANHNAKLNGLDPER-VQFVSGDASNIFNNEK----FKKSGI-SGK 505

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHIL-YISCNPDSLCRDLSIL-------STTHTIE 342
              + VDP R G +++ +  +  + P I+ Y+SCN  S  RDL+         +  + ++
Sbjct: 506 NSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQQNTNVKYKVK 565

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +  FD FP T+H+E   +L +
Sbjct: 566 DIMGFDFFPQTKHVESIAILEK 587


>gi|194443652|ref|YP_002040122.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|226725413|sp|B4T0E3|RUMB_SALNS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|194402315|gb|ACF62537.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 376

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + I+R+ LFD FP+T H E   LL R 
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLTLLRRS 375


>gi|301168142|emb|CBW27730.1| putative 23S rRNA (uracil-5-)-methyltransferase [Bacteriovorax
           marinus SJ]
          Length = 376

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 78/183 (42%), Gaps = 27/183 (14%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATK-----GIQGDLLELYCGNGNFSLVLARHFDRVL 235
           R  E  FTQ N  +N  ML  +    +     GI   LL+L+ G GN S  L  +     
Sbjct: 207 RYSEGGFTQVNEEMNQKMLSHLEEQVRQYIPAGIT--LLDLFGGAGNLSYNLEEY--ETY 262

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            V+   P+    R + +   +N  K           A+ + +     KDI         I
Sbjct: 263 VVDGFPPTEMNYRPHQSFEQINLYK---------EGAIDKLQSRCSGKDI--------AI 305

Query: 296 FVDPPRSGLDDATVGMVQAYPHILY-ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
            +DPPRSGL +    + +  P  ++ I+C P S  RD+  +    +IE L  FD FP TR
Sbjct: 306 ILDPPRSGLKNINELIQKLKPSFIFMINCEPSSAIRDIKSIEGDFSIENLTTFDLFPGTR 365

Query: 355 HME 357
           H E
Sbjct: 366 HFE 368


>gi|238913400|ref|ZP_04657237.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 376

 Score = 59.7 bits (143), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + I+R+ LFD FP+T H E   LL R 
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRRS 375


>gi|91218041|ref|ZP_01254992.1| putative RNA methyltransferase [Psychroflexus torquis ATCC 700755]
 gi|91183788|gb|EAS70180.1| putative RNA methyltransferase [Psychroflexus torquis ATCC 700755]
          Length = 184

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  +  +A+    V+ +E    ++E A+ N   N + N          F   
Sbjct: 40  VYDLYTGTGTIAQFVAKKAKHVVGIESVLEAIEDAKSNAKLNGIENTSF-------FAGD 92

Query: 273 MRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSL 328
           M++    EF     I+ H  +   I  DPPR G+  D    ++   P  I+Y+SCN  + 
Sbjct: 93  MKKLFNSEF-----IEKHG-QPDVIITDPPRDGMHKDVIQQILNVKPKRIVYVSCNSATQ 146

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            RDL ++   + ++     D FP T H+E  V L
Sbjct: 147 ARDLELMDEFYKVDESQAVDMFPQTHHVENVVCL 180


>gi|62179445|ref|YP_215862.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614854|ref|YP_001588819.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|224582732|ref|YP_002636530.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|75484288|sp|Q57R80|RUMB_SALCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|189045736|sp|A9N824|RUMB_SALPB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|254766928|sp|C0PXN9|RUMB_SALPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|62127078|gb|AAX64781.1| putative tRNA (uracil-5-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161364218|gb|ABX67986.1| hypothetical protein SPAB_02607 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224467259|gb|ACN45089.1| 23S rRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713914|gb|EFZ05485.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 376

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + I+R+ LFD FP+T H E   LL R 
Sbjct: 342 DIRHLPN-YRIQRVQLFDMFPHTAHYEVLALLRRS 375


>gi|255017119|ref|ZP_05289245.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           FSL F2-515]
          Length = 149

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 16/126 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV      +++    
Sbjct: 6   LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 65

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLC 329
             +E             +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L 
Sbjct: 66  WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLA 112

Query: 330 RDLSIL 335
           RDL++L
Sbjct: 113 RDLALL 118


>gi|255326644|ref|ZP_05367720.1| 23S rRNA-methyltransferase RumB [Rothia mucilaginosa ATCC 25296]
 gi|255295861|gb|EET75202.1| 23S rRNA-methyltransferase RumB [Rothia mucilaginosa ATCC 25296]
          Length = 377

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 35/214 (16%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHML----EWVLAATKGIQGDLLE 215
           DE + ++ R  +  Q+ +        SF Q N  +   M     EWV          L +
Sbjct: 183 DEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPR---SLWD 239

Query: 216 LYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           LYCG G F+L  A   D   V  +EI+  +V +A+  +A   +  V      + EF  + 
Sbjct: 240 LYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVGFSAQDAPEFAVS- 298

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
                              + + V+PPR G+ ++    ++      ++Y SCN  +L +D
Sbjct: 299 --------------SGTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKD 344

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L  + +   ++   L D FP+T H E  VLL R+
Sbjct: 345 LERMPSYAPVQGRVL-DMFPHTDHYEVMVLLQRQ 377


>gi|329114669|ref|ZP_08243428.1| Putative RNA methyltransferase [Acetobacter pomorum DM001]
 gi|326696149|gb|EGE47831.1| Putative RNA methyltransferase [Acetobacter pomorum DM001]
          Length = 432

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 19/147 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ELY G G  +  LA H  RV A E   P++EA +   +   ++               
Sbjct: 284 ITELYAGCGTLTFPLAEHA-RVNAYEGYAPALEALKKATSGTRISTFC------------ 330

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD 331
               R+ N    +         + +DPP +G       + Q  P HI+Y+SCNP +L +D
Sbjct: 331 ----RDLNHQPVLAKEIAASAVVVLDPPHAGAKLQMRQIAQGLPTHIIYVSCNPAALAQD 386

Query: 332 LSILSTT-HTIERLALFDQFPYTRHME 357
            S+L+   +T+E + + DQF ++  +E
Sbjct: 387 ASLLAKAGYTVENVTVVDQFLWSAEIE 413


>gi|91088207|ref|XP_973242.1| PREDICTED: similar to CG3808 CG3808-PA [Tribolium castaneum]
 gi|270011827|gb|EFA08275.1| hypothetical protein TcasGA2_TC005909 [Tribolium castaneum]
          Length = 586

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 24/157 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L  A++  +VL +EI   ++  A+ N   N + N +     ++E   +
Sbjct: 423 VLDVCCGTGTIGLCFAKNCKKVLGIEIVPQAIIDAKANAKLNEIENSEFFEGKAEEILGS 482

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLC 329
           +     +  + D+           VDPPR+GL    V  ++    I   +Y+SCNP +  
Sbjct: 483 VC----YRAMGDV--------VAVVDPPRAGLQQKAVVQIRKINKIGQLVYVSCNPAAAL 530

Query: 330 RDL-----SILSTTHTIE----RLALFDQFPYTRHME 357
           ++          T H       R  + D FP+TRH E
Sbjct: 531 KNFIDIGRPASKTLHNEPLVPVRAVVVDMFPHTRHCE 567


>gi|15842227|ref|NP_337264.1| hypothetical protein MT2763 [Mycobacterium tuberculosis CDC1551]
 gi|254232795|ref|ZP_04926122.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis C]
 gi|13882517|gb|AAK47078.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|124601854|gb|EAY60864.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis C]
          Length = 434

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVL 235
           +Y  +   + QP  G    M  W             +LY G G F+ VL        RVL
Sbjct: 275 VYSDLIADWAQPAPG----MTAW-------------DLYGGAGVFAAVLGEAVGESGRVL 317

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            V+ ++ +  AAR  +    +  V++V       T ++RR         + +        
Sbjct: 318 TVDTSRLASGAARAALV--DLPQVEVV-------TGSVRRV--------LAVQPAGADLA 360

Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPRSG     V ++     P +++I C   S  RD+ +     + +E++ +FD FP 
Sbjct: 361 VLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPL 420

Query: 353 TRHMECGVLLVRK 365
           T ++EC  LL RK
Sbjct: 421 THYVECVALLTRK 433


>gi|156034222|ref|XP_001585530.1| hypothetical protein SS1G_13414 [Sclerotinia sclerotiorum 1980]
 gi|154698817|gb|EDN98555.1| hypothetical protein SS1G_13414 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 606

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 19/165 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G+G F++ L+  F     ++I+  S+ +AR N   N ++  +   M++     A
Sbjct: 415 LIDAYSGSGLFTITLSSLFKSSTGIDISDASIISARRNAELNKLDASRCSFMAA----DA 470

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
            +  ++    +D  +       + +DPPR G D++ +  +  +    ++Y+SCN  +  R
Sbjct: 471 PKLFKQVTYPRDETV-------VVIDPPRKGCDESFLSQLLKFGPRRVVYVSCNVHTQAR 523

Query: 331 DLSIL------STTHTIERLALFDQFPYTRHMECGVLLVRKPSGW 369
           D+ +L         + IE L  FD FP T H+E   +L R   G 
Sbjct: 524 DVGVLVKGGENGVRYEIESLRGFDFFPQTGHVEGVAVLNRVDEGG 568


>gi|309782327|ref|ZP_07677054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia sp.
           5_7_47FAA]
 gi|308918945|gb|EFP64615.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia sp.
           5_7_47FAA]
          Length = 448

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 29/198 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L       GD LL+L+CG GNF+L +A     
Sbjct: 257 GITMPFKPTD--FTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRARE 314

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RF 292
           V+ +E ++     A  N   N ++       +  +F       R    +   DI +  +F
Sbjct: 315 VMGIEGSEALTTRALANAQHNGLD-------AKTKFAC-----RNLFEVTADDIAALGKF 362

Query: 293 KTIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTH 339
               VDPPR G    +  + +               I+Y+SCNP +L RD  +L     +
Sbjct: 363 DRWLVDPPREGALAVSKALAELSQRGGEEADLLPKRIVYVSCNPATLARDAGLLVHEAGY 422

Query: 340 TIERLALFDQFPYTRHME 357
            +    + + FP+T H+E
Sbjct: 423 RLAGAGVVNMFPHTSHVE 440


>gi|289570865|ref|ZP_06451092.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289544619|gb|EFD48267.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T17]
          Length = 382

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVL 235
           +Y  +   + QP  G    M  W             +LY G G F+ VL        RVL
Sbjct: 223 VYSDLIADWAQPAPG----MTAW-------------DLYGGAGVFAAVLGEAVGESGRVL 265

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            V+ ++ +  AAR  +    +  V++V       T ++RR         + +        
Sbjct: 266 TVDTSRLASGAARAALV--DLPQVEVV-------TGSVRRV--------LAVQPAGADLA 308

Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPRSG     V ++     P +++I C   S  RD+ +     + +E++ +FD FP 
Sbjct: 309 VLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPL 368

Query: 353 TRHMECGVLLVRK 365
           T ++EC  LL RK
Sbjct: 369 THYVECVALLTRK 381


>gi|308373477|ref|ZP_07432477.2| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308337510|gb|EFP26361.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu005]
          Length = 397

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVL 235
           +Y  +   + QP  G    M  W             +LY G G F+ VL        RVL
Sbjct: 238 VYSDLIADWAQPAPG----MTAW-------------DLYGGAGVFAAVLGEAVGESGRVL 280

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            V+ ++ +  AAR  +    +  V++V       T ++RR         + +        
Sbjct: 281 TVDTSRLASGAARAALV--DLPQVEVV-------TGSVRRV--------LAVQPAGADLA 323

Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPRSG     V ++     P +++I C   S  RD+ +     + +E++ +FD FP 
Sbjct: 324 VLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPL 383

Query: 353 TRHMECGVLLVRK 365
           T ++EC  LL RK
Sbjct: 384 THYVECVALLTRK 396


>gi|168236826|ref|ZP_02661884.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194734709|ref|YP_002113975.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194710211|gb|ACF89432.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290210|gb|EDY29567.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 375

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + I+ + LFD FP+T H E   LL R
Sbjct: 342 DIRHLP-NYRIQSVQLFDMFPHTAHYEVLTLLCR 374


>gi|15609826|ref|NP_217205.1| hypothetical protein Rv2689c [Mycobacterium tuberculosis H37Rv]
 gi|31793861|ref|NP_856354.1| hypothetical protein Mb2708c [Mycobacterium bovis AF2122/97]
 gi|121638564|ref|YP_978788.1| hypothetical protein BCG_2702c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662530|ref|YP_001284053.1| hypothetical protein MRA_2717 [Mycobacterium tuberculosis H37Ra]
 gi|148823879|ref|YP_001288633.1| hypothetical protein TBFG_12704 [Mycobacterium tuberculosis F11]
 gi|167970088|ref|ZP_02552365.1| conserved alanine valine and glycine rich protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215404653|ref|ZP_03416834.1| hypothetical protein Mtub0_13403 [Mycobacterium tuberculosis
           02_1987]
 gi|215412496|ref|ZP_03421230.1| hypothetical protein Mtub9_14130 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428115|ref|ZP_03426034.1| hypothetical protein MtubT9_17663 [Mycobacterium tuberculosis T92]
 gi|215431629|ref|ZP_03429548.1| hypothetical protein MtubE_13343 [Mycobacterium tuberculosis
           EAS054]
 gi|215446943|ref|ZP_03433695.1| hypothetical protein MtubT_13777 [Mycobacterium tuberculosis T85]
 gi|224991056|ref|YP_002645745.1| hypothetical alanine and valine and glycine rich protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798229|ref|YP_003031230.1| hypothetical protein TBMG_01284 [Mycobacterium tuberculosis KZN
           1435]
 gi|254365350|ref|ZP_04981395.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|260187706|ref|ZP_05765180.1| hypothetical protein MtubCP_16984 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201816|ref|ZP_05769307.1| hypothetical protein MtubT4_17400 [Mycobacterium tuberculosis T46]
 gi|260205999|ref|ZP_05773490.1| hypothetical protein MtubK8_17045 [Mycobacterium tuberculosis K85]
 gi|289444231|ref|ZP_06433975.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T46]
 gi|289448344|ref|ZP_06438088.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553525|ref|ZP_06442735.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289575387|ref|ZP_06455614.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289746490|ref|ZP_06505868.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751341|ref|ZP_06510719.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T92]
 gi|289754791|ref|ZP_06514169.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289758817|ref|ZP_06518195.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294994218|ref|ZP_06799909.1| hypothetical protein Mtub2_06818 [Mycobacterium tuberculosis 210]
 gi|297635297|ref|ZP_06953077.1| hypothetical protein MtubK4_14295 [Mycobacterium tuberculosis KZN
           4207]
 gi|297732293|ref|ZP_06961411.1| hypothetical protein MtubKR_14444 [Mycobacterium tuberculosis KZN
           R506]
 gi|298526159|ref|ZP_07013568.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306776968|ref|ZP_07415305.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|306780871|ref|ZP_07419208.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu002]
 gi|306785495|ref|ZP_07423817.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|306790092|ref|ZP_07428414.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu004]
 gi|306798595|ref|ZP_07436897.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu006]
 gi|306804453|ref|ZP_07441121.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu008]
 gi|306807509|ref|ZP_07444177.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|306968748|ref|ZP_07481409.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|306973083|ref|ZP_07485744.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|307080792|ref|ZP_07489962.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu011]
 gi|307085384|ref|ZP_07494497.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|313659626|ref|ZP_07816506.1| hypothetical protein MtubKV_14449 [Mycobacterium tuberculosis KZN
           V2475]
 gi|2181980|emb|CAB09480.1| CONSERVED HYPOTHETICAL ALANINE AND VALINE AND GLYCINE RICH PROTEIN
           [Mycobacterium tuberculosis H37Rv]
 gi|31619455|emb|CAD94893.1| CONSERVED HYPOTHETICAL ALANINE AND VALINE AND GLYCINE RICH PROTEIN
           [Mycobacterium bovis AF2122/97]
 gi|121494212|emb|CAL72690.1| Conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|134150863|gb|EBA42908.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148506682|gb|ABQ74491.1| conserved hypothetical alanine,valine and glycine rich protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148722406|gb|ABR07031.1| conserved alanine valine and glycine rich protein [Mycobacterium
           tuberculosis F11]
 gi|224774171|dbj|BAH26977.1| hypothetical alanine and valine and glycine rich protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319732|gb|ACT24335.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417150|gb|EFD14390.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T46]
 gi|289421302|gb|EFD18503.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289438157|gb|EFD20650.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289539818|gb|EFD44396.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289687018|gb|EFD54506.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289691928|gb|EFD59357.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T92]
 gi|289695378|gb|EFD62807.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289714381|gb|EFD78393.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495953|gb|EFI31247.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214625|gb|EFO74024.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|308326272|gb|EFP15123.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu002]
 gi|308329852|gb|EFP18703.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308333443|gb|EFP22294.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308341112|gb|EFP29963.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308346104|gb|EFP34955.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308348938|gb|EFP37789.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu008]
 gi|308353635|gb|EFP42486.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|308357482|gb|EFP46333.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|308361436|gb|EFP50287.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu011]
 gi|308365031|gb|EFP53882.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|323718685|gb|EGB27847.1| hypothetical protein TMMG_02698 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904303|gb|EGE51236.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis W-148]
 gi|328458001|gb|AEB03424.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis KZN 4207]
          Length = 405

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVL 235
           +Y  +   + QP  G    M  W             +LY G G F+ VL        RVL
Sbjct: 246 VYSDLIADWAQPAPG----MTAW-------------DLYGGAGVFAAVLGEAVGESGRVL 288

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            V+ ++ +  AAR  +    +  V++V       T ++RR         + +        
Sbjct: 289 TVDTSRLASGAARAALV--DLPQVEVV-------TGSVRRV--------LAVQPAGADLA 331

Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPRSG     V ++     P +++I C   S  RD+ +     + +E++ +FD FP 
Sbjct: 332 VLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPL 391

Query: 353 TRHMECGVLLVRK 365
           T ++EC  LL RK
Sbjct: 392 THYVECVALLTRK 404


>gi|313672911|ref|YP_004051022.1| deoxyribonuclease/rho motif-related tram [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939667|gb|ADR18859.1| deoxyribonuclease/rho motif-related TRAM [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 388

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 26/184 (14%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF Q N  +       V+   KG +  +LE YCG+G F++ L++   +++A++       
Sbjct: 227 SFFQTNRYLFESFQRKVVEQLKGYE-TVLEFYCGSGFFTIPLSKEVRKIVAID------- 278

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR--LKDIDIHSYRFKTIFVDPPRSG 303
                       N + +R+  +   QA  R    N    KDI     RF  + V+P R G
Sbjct: 279 -----------QNDEALRLLKQ---QATGRAEVLNTDLKKDIINIKGRFDAVLVNPDRDG 324

Query: 304 LDDATVGMV-QAYPHIL-YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L    + ++    P I+ Y+SCNP ++ RD+      + + +  + DQF  T H+E   +
Sbjct: 325 LSKGVLKVIMDKKPEIIVYVSCNPQTMSRDIKNFMNRYKMCQFTVVDQFYKTYHIESIAV 384

Query: 362 LVRK 365
           L  +
Sbjct: 385 LTER 388


>gi|310287162|ref|YP_003938420.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum S17]
 gi|309251098|gb|ADO52846.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum S17]
          Length = 420

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINV----HMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E +TV GR   Y    N F Q +    V    H+++    A  G+    + +LY G G F
Sbjct: 223 ETVTVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLF 282

Query: 224 SLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE  K +V+ A+ N+ A ++ +V   R      T          
Sbjct: 283 TLPLATMTAERTRMLSVEGGKTAVKNAQRNLRALNLPDVD-ARCGDVSAT---------- 331

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-ST 337
            L  +  H  R   + +DPPR+G        +       ++Y++C+P SL RD + L S 
Sbjct: 332 -LAHVPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISL 390

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + +  +  +D +P T H+E      R
Sbjct: 391 GYRLSDIRAYDIYPMTHHVETVAWFTR 417


>gi|307169861|gb|EFN62370.1| HpaII tiny fragments locus 9c protein [Camponotus floridanus]
          Length = 583

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 25/165 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           LL++ CG G   L  ++H   VL +EI   +++ A+ N+  N + N +  V  +    + 
Sbjct: 412 LLDVCCGTGTIGLCFSKHCGEVLGIEIIPDAIKDAKENVIKNGITNCEFFVGKAEDILSP 471

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP--HILYISCNPDSL 328
            ++R  + N             T  VDPPR+GL   A + + +A     ++YISC+P + 
Sbjct: 472 VIQRTTKSNI------------TAIVDPPRAGLHQKALLALRKAKKLNRLVYISCDPRAA 519

Query: 329 CRDLSILSTTHTIERLA---------LFDQFPYTRHMECGVLLVR 364
            +++  L+   + + L            D FP+T+H E  + L R
Sbjct: 520 MKNVVDLARPSSKQYLGEPFVPVKAIAVDMFPHTKHCELILCLER 564


>gi|255536105|ref|YP_003096476.1| RNA methyltransferase, TrmA family [Flavobacteriaceae bacterium
           3519-10]
 gi|255342301|gb|ACU08414.1| RNA methyltransferase, TrmA family [Flavobacteriaceae bacterium
           3519-10]
          Length = 469

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 15/160 (9%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  + +LY G G  +  +A++  +V+ +E  + ++ AA+ +   N ++N        
Sbjct: 320 LKGDEVVYDLYTGTGTIAQYVAKNAKKVIGIESVQEAINAAKEHAKLNGLDNCTFYCGDM 379

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
           K+          FN   +   +  +   +  DPPR G+    V  +   A   I+Y+SCN
Sbjct: 380 KDI---------FN--DEFLANHPKADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSCN 428

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             +  RD++++   + + ++   D FP T H+E   LLV+
Sbjct: 429 SATQARDMALMKDHYRLVKILPVDMFPQTHHVENIALLVK 468


>gi|163867876|ref|YP_001609080.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017527|emb|CAK01085.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 417

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 92/203 (45%), Gaps = 29/203 (14%)

Query: 170 RLTVAGRTLIYRQ-------------IENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           RL+V G  LI R+                 F Q        M   +L   K  + + L+L
Sbjct: 213 RLSVDGEVLIEREKPVIYFGDVRVEFPSGGFLQATCEAENAMGNIILTHLKKAK-NALDL 271

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           + G G F+L +A+  + V AVE  + ++E    + AA     +K V    ++  +     
Sbjct: 272 FSGVGTFALRMAKKMN-VHAVENDEKALE--NLSSAARFSTGLKTVTCEKRDLFRYPLSV 328

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL 335
           +E             F+++  DPPR+G +     + +A    ++ ISCNP +  RDLS+L
Sbjct: 329 KELEC----------FESVVFDPPRAGAEGQVRELAKATVSRVVAISCNPATFARDLSLL 378

Query: 336 -STTHTIERLALFDQFPYTRHME 357
            +  +TIE++   DQF ++ H+E
Sbjct: 379 VAGGYTIEKITPIDQFLWSSHVE 401


>gi|145637263|ref|ZP_01792924.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittHH]
 gi|145269515|gb|EDK09457.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittHH]
          Length = 391

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L +L+CG G F L  A+         I    +E +   I A   N+ KI+ +    F  
Sbjct: 241 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILGLEHVNFQS 299

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLC 329
                   N+ ++      +   + V+PPR G+  + +  + Q  PH ILY SCN  ++ 
Sbjct: 300 LNAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMG 353

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 354 KDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 388


>gi|297572301|ref|YP_003698075.1| (uracil-5)-methyltransferase [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932648|gb|ADH93456.1| (Uracil-5)-methyltransferase [Arcanobacterium haemolyticum DSM
           20595]
          Length = 395

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 21/154 (13%)

Query: 215 ELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +LYCG G F++ LA+  +  +V+ VE+++ +VEAA   +AA  +  V  V     E+   
Sbjct: 259 DLYCGVGGFAMALAQLGNASKVIGVEVSEQAVEAA--RVAARDLPGVAFVAADVSEWIAE 316

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330
              ER                 + V+PPR G+       + ++ P ++LY SCN ++L R
Sbjct: 317 QGEERP--------------GAVVVNPPRRGISPELCAWLNESGPDYVLYSSCNAETLAR 362

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D++ +   + +ER  + D FP+T+H E  VLL R
Sbjct: 363 DVAAMPA-YRVERAQVVDMFPHTKHFETLVLLKR 395


>gi|300312262|ref|YP_003776354.1| 23S rRNA (Uracil-5-)-methyltransferase [Herbaspirillum seropedicae
           SmR1]
 gi|300075047|gb|ADJ64446.1| 23S rRNA (Uracil-5-)-methyltransferase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 453

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 21/158 (13%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  + +L+CG GNF+L +A     V+ +E +    E A  N   N V+         +  
Sbjct: 298 QDRVADLFCGLGNFTLPIATLAREVVGIEGSTALTERALDNAKVNGVD--AKTSFYCRNL 355

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--------ILYI 321
            +A  +  +F  L        +F  + +DPPR G  +    +V+  P         I+Y+
Sbjct: 356 FEA--KPEDFVALG-------KFDRMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYV 406

Query: 322 SCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHME 357
           SCNP +L RD  +L     + ++   + + FP+T H+E
Sbjct: 407 SCNPATLARDAGMLVHLGGYALKYAGVVNMFPHTAHVE 444


>gi|218754425|ref|ZP_03533221.1| hypothetical protein MtubG1_13794 [Mycobacterium tuberculosis GM
           1503]
 gi|254551745|ref|ZP_05142192.1| hypothetical protein Mtube_15022 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289762860|ref|ZP_06522238.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|289710366|gb|EFD74382.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis GM 1503]
          Length = 405

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 40/193 (20%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVL 235
           +Y  +   + QP  G    M  W             +LY G G F+ VL        RVL
Sbjct: 246 VYSDLIADWAQPAPG----MTAW-------------DLYGGAGVFAAVLGEAVGESGRVL 288

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            V+ ++ +  AAR  +    +  V++V       T ++RR         + +        
Sbjct: 289 TVDTSRLASGAARAALV--DLPQVEVV-------TGSVRRV--------LAVQPAGADLA 331

Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPRSG     V ++     P +++I C   S  RD+ +     + +E++ +FD FP 
Sbjct: 332 VLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPL 391

Query: 353 TRHMECGVLLVRK 365
           T ++EC  LL RK
Sbjct: 392 THYVECVALLTRK 404


>gi|284031682|ref|YP_003381613.1| deoxyribonuclease [Kribbella flavida DSM 17836]
 gi|283810975|gb|ADB32814.1| deoxyribonuclease/rho motif-related TRAM [Kribbella flavida DSM
           17836]
          Length = 389

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q +      +++ VL+  +  +G+  L+LY G G F+  LA     VLAVE  + +
Sbjct: 216 GGFWQVHPAAATTLVDAVLSGLEPREGETALDLYSGVGLFAAFLAEAGCGVLAVEGDRDA 275

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ AR N+     +++  V +   +  + + R      L+ +D+       + +DPPR+G
Sbjct: 276 VKNARRNL-----HDLTGVTLEQGDVDRVLNRAVA-QGLEHVDL-------VVLDPPRTG 322

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGV 360
                V  +       + Y++C+P +L RDL   +   + +  L  FD F  T H+EC  
Sbjct: 323 AGQHVVRRIAGLSPRRVAYVACDPAALARDLKTFAGLGYGVSSLRAFDLFGMTHHIECVA 382

Query: 361 LL 362
           +L
Sbjct: 383 VL 384


>gi|163761045|ref|ZP_02168123.1| putative 23S rRNA (uracil-5-)-methyltransferase [Hoeflea
           phototrophica DFL-43]
 gi|162281826|gb|EDQ32119.1| putative 23S rRNA (uracil-5-)-methyltransferase [Hoeflea
           phototrophica DFL-43]
          Length = 419

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 94/214 (43%), Gaps = 35/214 (16%)

Query: 170 RLTVAGRTLIYRQ-----IENSFTQPNAGINVHMLEWVLAATKGIQGDLL---------- 214
           RL+  G  LI +Q            P  G  V   E    A + I GDL+          
Sbjct: 221 RLSFNGELLIEKQPPQLTFGTVTVNPPPGGFVQASE----AAEAIMGDLVTGHLKKAKRV 276

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +L+ G+G F+L LA +   V AVE        A  + AA H   +K V +  ++     
Sbjct: 277 VDLFSGSGTFTLRLAAN-SHVHAVE--SEEAALAALDRAARHAQGIKPVSVERRDL---F 330

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL 332
           RR   F+ LK        ++ +  DPPR+G +     + ++  P I  +SCNP +L RDL
Sbjct: 331 RRPVMFSELKT-------YQGLAFDPPRAGAEAQAREIAKSMVPRIAAVSCNPVTLARDL 383

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            IL +  + I  +   DQF ++ H+E   LL R 
Sbjct: 384 EILIAGGYRITSVTPIDQFLWSSHVEVVALLERS 417


>gi|84496220|ref|ZP_00995074.1| putative RNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84382988|gb|EAP98869.1| putative RNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 434

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 15/188 (7%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAK 241
            F Q + G     ++ V+   +   G+  L+LY G G F+  LA+      +V+AVE   
Sbjct: 238 GFWQVHPGAAATFVDAVIEGLRPQPGERGLDLYAGVGVFTSALAQAVGERGQVIAVESDA 297

Query: 242 PSVEAARYNI--------AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
            +V  AR N+            V++V  V  + +        +R     +          
Sbjct: 298 VAVAQARLNVEMTPWVQYVQGRVDHVFGVESTGRVAGSRKGGKRRAAPRRPNSAMPPTAD 357

Query: 294 TIFVDPPRSGLDDATVGMVQA-YPHIL-YISCNPDSLCRDLS-ILSTTHTIERLALFDQF 350
            + +DPPR+G   A +  V A  P  L Y++C+P +L RD + ++   + +  L  FD F
Sbjct: 358 VVVLDPPRTGAGKAVITAVVALAPRALAYVACDPAALARDTAYLMERGYALTSLRAFDAF 417

Query: 351 PYTRHMEC 358
           P T H+EC
Sbjct: 418 PMTHHVEC 425


>gi|77967332|gb|ABB08712.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia sp. 383]
          Length = 434

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 256 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 315

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   DI +   F    +DPPR G 
Sbjct: 316 RALANARENGVDG---------HTTFACRNLFE---VTGDDIRALGAFDKFLIDPPREGA 363

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 364 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 423

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 424 HVESIALFER 433


>gi|301770471|ref|XP_002920643.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
           [Ailuropoda melanoleuca]
          Length = 621

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LA    RV+ +E+ + +VE AR N   N + NV+     +++    
Sbjct: 432 VLDVCCGTGTIGLALAPRVKRVVGIELCQEAVEDARVNARDNELTNVEFHCGRAEDLVPT 491

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    +  V+   ++   LY+SCNP +  
Sbjct: 492 L-----VSRLASQQL------VAILDPPRAGLHSKVILAVRRAENLRRLLYVSCNPRAAM 540

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368
                LCR  S  +  T     +    D FP T H E  +L   V  P+G
Sbjct: 541 GNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTPHCEMLLLFERVEHPNG 590


>gi|116070578|ref|ZP_01467847.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. BL107]
 gi|116065983|gb|EAU71740.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. BL107]
          Length = 469

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 21/172 (12%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + +W+  +T    G +++ YCG G  SL LA     V+ +E+ + SV+ A  N   N++ 
Sbjct: 307 LCDWL--STDMGSGTVVDAYCGIGTISLPLAAKGFDVIGLELHQGSVDQALLNAMRNNL- 363

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316
                   SK+      R R  + +  ++   +    + +DPPR GLD   +  +   P 
Sbjct: 364 --------SKQC-----RFRAGDVVDLLEAALFGADALVLDPPRRGLDARVIQTILDTPP 410

Query: 317 -HILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVR 364
             + Y+SC+P +  RDL +L   +  + +++    D FP T H+E   LL R
Sbjct: 411 QRLAYLSCDPATQARDLKMLMEPAGPYRLKKHQPIDFFPQTTHLESLALLER 462


>gi|332529099|ref|ZP_08405063.1| 23S rRNA m(5)U1939 methyltransferase [Hylemonella gracilis ATCC
           19624]
 gi|332041322|gb|EGI77684.1| 23S rRNA m(5)U1939 methyltransferase [Hylemonella gracilis ATCC
           19624]
          Length = 493

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 21/161 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN-HVNNVKIVRMSSKEFTQ 271
           +++ +CG GNF+L LA     VL +E ++  V  +R N + N          ++   F  
Sbjct: 329 VIDWFCGLGNFTLPLATQAREVLGIEGSEALVARSRENASYNAQRRAAPWTPLAPTRF-- 386

Query: 272 AMRREREFNRLKDIDIHSYRF-KTIFVDPPRSG---LDDATVGMVQAYPH---------I 318
                R    L   D+ SY   +   VDPPR G   L  A    VQA            I
Sbjct: 387 ---EARNLFELAPADLLSYGVAQKWLVDPPREGAFALAKALADFVQAPESAPGYVLPRRI 443

Query: 319 LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
           +Y+SCNP +L RD  +L     +      + + FP+T H+E
Sbjct: 444 VYVSCNPATLARDAGLLVHQAGYRCTAAGVVNMFPHTAHVE 484


>gi|328954670|ref|YP_004372003.1| RNA methyltransferase, TrmA family [Coriobacterium glomerans PW2]
 gi|328454994|gb|AEB06188.1| RNA methyltransferase, TrmA family [Coriobacterium glomerans PW2]
          Length = 411

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 21/163 (12%)

Query: 211 GDL-LELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           GD+ L+ YCG+G   L  A H        RV+ VE     V  AR N   N ++   + R
Sbjct: 256 GDVVLDAYCGSGTIGLSCAAHMRASGRPIRVIGVERNPAGVRDARRNAEINGLD--AMAR 313

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYI 321
              ++ T  +    +     D+         + +DPPR+G   +     V+  P  I+YI
Sbjct: 314 FVEQDATAYIAGAADAGDRVDV---------LVLDPPRAGASPELLAAAVRLAPRRIVYI 364

Query: 322 SCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           SCNP +  RDL S+L     + R+   D FP+T H+E   +L 
Sbjct: 365 SCNPVTQARDLDSVLDAGFRLMRVTPVDMFPHTSHIETVAVLA 407


>gi|116670204|ref|YP_831137.1| deoxyribonuclease [Arthrobacter sp. FB24]
 gi|116610313|gb|ABK03037.1| deoxyribonuclease/rho motif-related TRAM [Arthrobacter sp. FB24]
          Length = 453

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 92/218 (42%), Gaps = 44/218 (20%)

Query: 169 ERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAATKGI--QGDLLE--- 215
           E L + GRT +        +R     F Q    I+    E ++ A KG    G  LE   
Sbjct: 254 ESLQLRGRTWVQESAAGHEFRVTGEGFWQ----IHRDAPETLVGALKGFLHDGGYLEPGA 309

Query: 216 ----LYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               LY G G F+  LA        VL+VE A  +   AR N+  +    V+IV+     
Sbjct: 310 VVADLYAGAGLFTAALADAVGVTGSVLSVEGAPGTSRDARKNL--HGAPQVEIVQGR--- 364

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPD 326
             + + R++  N           F  + +DPPR+G   A V  ++ A P  I Y+SC+P 
Sbjct: 365 -VERVLRQKPRN-----------FDALVLDPPRAGAGKAVVSQLMAAGPRAIAYVSCDPA 412

Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           S  RDL         +  L  FD +P+T HME   LL 
Sbjct: 413 SFARDLGYFRQGGWQLAGLRAFDLYPHTHHMETVALLT 450


>gi|227893601|ref|ZP_04011406.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           ultunensis DSM 16047]
 gi|227864593|gb|EEJ72014.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           ultunensis DSM 16047]
          Length = 465

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 82/392 (20%), Positives = 156/392 (39%), Gaps = 68/392 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFR--SEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +Y+QQL  K DR+++++  +    +++ +    P+    R E            ++  ++
Sbjct: 101 KYDQQLKFKEDRIKKLLNKYGFKEVKVNKILPSPLTKGYRNEI-----------VLPVRE 149

Query: 67  TKERMRIDYFMP---------GSLLINALMIEMMATIR----------LEPLLRAKLFQ- 106
            K ++ + +F P          S++ N  ++  +  +R           +P   +   + 
Sbjct: 150 VKGQLEVGFFEPRTGRFIPLNKSIITNEAVVTAVYAVRDILRKLKVPAYDPNTNSGFIRD 209

Query: 107 IDYLTSQSDQA-IVTLIYHRLLDDAWRECAIRLRDALHARKYQI---------QLIGRAN 156
           ID   SQ  +  IVTLI H        E    + + LH     +         ++ G++N
Sbjct: 210 IDVRRSQGKKGMIVTLITHENDRVDLPEIVGLITEKLHNVNGVVLNYNPHKTDEIFGKSN 269

Query: 157 KTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214
              I L   DYV++ L      + ++    S+ Q N      + +  L+       D L+
Sbjct: 270 ---IPLWGNDYVEDELD----GIQFKISPKSYFQANGSQLKPITDLALSLLDLKDTDKLI 322

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + +CG G   L+ A+    V  ++  + S++ AR N   N ++N      S ++      
Sbjct: 323 DAFCGVGTVGLLAAKKVAAVRGIDAERVSIQDARENADTNKIDNATYYNGSVEQVLSRFA 382

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
           +  E            +   I   PP  GL    V    + +P  I+Y S NPD++ RDL
Sbjct: 383 KNDE------------KGTVIMATPPAKGLSHGFVDAAAKMHPRRIVYGSTNPDTMVRDL 430

Query: 333 SILSTT-HTIERLALFDQFPYTRHMEC-GVLL 362
           +      +T   +   D  P T  ++C GVL+
Sbjct: 431 ACFKKKGYTCTEITPIDTAPQTPEVKCFGVLV 462


>gi|307729589|ref|YP_003906813.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1003]
 gi|307584124|gb|ADN57522.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1003]
          Length = 476

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 298 FTQVNHAINRVLVGRALRLLAPARTDRVLDLFCGIGNFTLPLARIAKEVVGIEGSEVLTT 357

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V            F      E   + L+ +      F    +DPPR G  
Sbjct: 358 RALANAELNGV-------AGHTSFACRNLFEVTADDLRALG----HFDKFLIDPPREGAL 406

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + +    + + FP+T H
Sbjct: 407 AVAKALAEIAQSGTGPLPARIVYVSCNPSTLARDSGLLVHEAGYRLVGAGVVNMFPHTSH 466

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 467 VESIALFER 475


>gi|260597259|ref|YP_003209830.1| 23S rRNA methyluridine methyltransferase [Cronobacter turicensis
           z3032]
 gi|260216436|emb|CBA29543.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Cronobacter turicensis
           z3032]
          Length = 375

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A     +  +EIA  ++   R +     + +V    + S +F   
Sbjct: 237 MWDLFCGVGGFGLHCATPEMTLTGIEIAPEAIACCRASAQELGLRSVHFQALDSTDFATG 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
            +   +                + V+PPR G+ +A    +   A  +++Y SCN  ++ +
Sbjct: 297 QQAVPDL---------------VLVNPPRRGIGEALCEYLSRMAPRYMVYSSCNAQTMAK 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L   + + R+ LFD FP+T H E   LLVR+
Sbjct: 342 DIKQLRG-YRVVRVQLFDMFPHTAHYEVLTLLVRE 375


>gi|154508937|ref|ZP_02044579.1| hypothetical protein ACTODO_01453 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798571|gb|EDN80991.1| hypothetical protein ACTODO_01453 [Actinomyces odontolyticus ATCC
           17982]
          Length = 431

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 34/166 (20%)

Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAA--------NHVNNVKI 261
           ++ELY G G FS+ LAR      RV+ +E  + +V  A  N+AA         +V+   +
Sbjct: 286 VMELYSGAGLFSVPLARAVGESGRVVTLEGDEGAVRDAGENLAAFDWVDAFAGNVDREGV 345

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHIL 319
           V +S +            + + D+         +  DPPR+G        + A   P ++
Sbjct: 346 VDLSGQ-----------LSAVPDV---------VVADPPRAGAGAEVCEAIAATGAPRVV 385

Query: 320 YISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            +SC+P +  RDL  L+   + +E L  +D FP+T H+E   +L R
Sbjct: 386 LVSCDPAAGARDLRTLTEAGYQLESLQAWDLFPHTHHVEMVSVLSR 431


>gi|311064025|ref|YP_003970750.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum
           PRL2010]
 gi|310866344|gb|ADP35713.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum
           PRL2010]
          Length = 420

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 23/207 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINV----HMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           E +TV GR   Y    N F Q +    V    H+++    A  G+    + +LY G G F
Sbjct: 223 ETVTVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLF 282

Query: 224 SLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +L LA       R+L+VE  K +V+ A+ N+ A ++ +V   R      T A        
Sbjct: 283 TLPLATMTAERTRMLSVEGGKTAVKNAQRNLRALNLPDVD-ARCGDVSATLAY------- 334

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-ST 337
               +  H  R   + +DPPR+G        +       ++Y++C+P SL RD + L S 
Sbjct: 335 ----VPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISL 390

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + +  +  +D +P T H+E      R
Sbjct: 391 GYRLSDIRAYDIYPMTHHVETVAWFTR 417


>gi|172056678|ref|YP_001813138.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171989199|gb|ACB60121.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum
           255-15]
          Length = 461

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 159/386 (41%), Gaps = 58/386 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI------HYRMRAEFHIWHDGDDLYHIMF 63
           YE QL  K D +R         N++     P        YR +++F +  +G  +   ++
Sbjct: 93  YEGQLRYKEDMVRNAFTKSTKLNVEKSDIRPTIGTTEWEYRNKSQFAVGKEGTQIVSGLY 152

Query: 64  DQ-------------QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
                          Q KE +R++  +  + ++N   + +  + + + ++R  + +    
Sbjct: 153 SANSNRLVAIDECIVQNKETLRVNKAV--TKILNDYNVPVYNSAKQDGVIRNIVVRTGIK 210

Query: 111 TSQSDQAIVTLI-YHRLLDDAWRE---------CAIRLRDALHARKYQIQLIGRANKTKI 160
           T +    +V      + L+   R+          A+ + D + +R +         +T+I
Sbjct: 211 TGEIQVVLVAFKDGFKDLEGLSRDIYDIPGVISVALNINDKMTSRVF-------GEQTEI 263

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219
               + ++E++        Y+    +F Q N      M  E V AA    +  +++ Y G
Sbjct: 264 LRGVERIEEKMG----EFTYQLSPRAFFQLNPEQAERMYGEIVKAAALTGEERVVDAYAG 319

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G+  L +A     V  +EI + +VE A  ++     N+ + V   ++ +     +E   
Sbjct: 320 VGSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQYVVGKAETWIPRWVKE--- 376

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILS 336
             + D+ I         VDPPRSG D   +  M+ +    I+Y+SCNP +L RD   ++ 
Sbjct: 377 GWIPDVFI---------VDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLARDCDHLMK 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
             + +  +  +D FP T H+E  V+L
Sbjct: 428 AGYKVSYIQPYDMFPQTAHVEAIVVL 453


>gi|161702959|ref|YP_369356.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia sp. 383]
 gi|143580735|sp|Q39FQ4|RUMA_BURS3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 465

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   DI +   F    +DPPR G 
Sbjct: 347 RALANARENGVDG---------HTTFACRNLFE---VTGDDIRALGAFDKFLIDPPREGA 394

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 395 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 455 HVESIALFER 464


>gi|310794654|gb|EFQ30115.1| hypothetical protein GLRG_05259 [Glomerella graminicola M1.001]
          Length = 608

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 20/161 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G+G F++ LA  F     ++IA+ S+E AR N            R++    +Q 
Sbjct: 454 LIDAYSGSGLFTITLASLFQGSTGIDIAQDSIECARKN-----------ARLNGLPESQC 502

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                +  +L     +      + +DPPR G D   +G +  +    ++Y+SCN  +  R
Sbjct: 503 NFLAADAPQLFAHVTYPADETVVVIDPPRKGCDADFLGQLLRFGPRRVVYVSCNVHTQAR 562

Query: 331 DLSIL-------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ +L        T + IE +  FD FP T H+E   +L R
Sbjct: 563 DVGVLVRGDGGEGTRYEIESVVGFDFFPQTGHVEGVAVLNR 603


>gi|255953869|ref|XP_002567687.1| Pc21g06420 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589398|emb|CAP95539.1| Pc21g06420 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 537

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 22/161 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L V+I   S+ +AR N  AN + N       +      
Sbjct: 381 LLDAYSGSGLFTITLSPLFKSSLGVDIGGDSIVSARENARANKLPNTGFAAADAATL--- 437

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCR 330
                     KD+     +   + +DPPR G  +D    M+   P  ++Y+SCN  +  R
Sbjct: 438 ---------FKDVPYPPDQ-TLLVIDPPRKGCSEDFLRQMLDFKPRRVVYVSCNVHTQAR 487

Query: 331 DLSIL-------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D++++       +  + IE +  FD FP T H+E   +L R
Sbjct: 488 DVAVMVQGDEKQNVRYEIESVRGFDFFPQTGHVEGVAILNR 528


>gi|68481799|ref|XP_715141.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
 gi|46436751|gb|EAK96108.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
          Length = 588

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 21/202 (10%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232
            +++   N F Q N  I   +L+++   +  +     +L++ YCG G F + L++ F+  
Sbjct: 392 FLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIALSKSFNEN 451

Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V  +E+ + +++ A +N   N ++  + V+  S + +     E      K   I S +
Sbjct: 452 TKVFGIELVEQAIKYANHNAKLNGLDPER-VQFVSGDASNIFNNEN----FKKSGI-SGK 505

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHIL-YISCNPDSLCRDLSIL-------STTHTIE 342
              + VDP R G +++ +  +  + P I+ Y+SCN  S  RDL+         +  + ++
Sbjct: 506 NSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQQNTNVKYKVK 565

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +  FD FP T+H+E   +L +
Sbjct: 566 DVMGFDFFPQTKHVESIAILEK 587


>gi|319775106|ref|YP_004137594.1| 23S rRNA (uracil-5-)-methyltransferase rumB, fragment (pseudogene)
           [Haemophilus influenzae F3047]
 gi|329122980|ref|ZP_08251551.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus aegyptius
           ATCC 11116]
 gi|317449697|emb|CBY85904.1| 23S rRNA (uracil-5-)-methyltransferase rumB, fragment (pseudogene)
           [Haemophilus influenzae F3047]
 gi|327471911|gb|EGF17351.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus aegyptius
           ATCC 11116]
          Length = 392

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 16/159 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L +L+CG G F L  A+         I    +E +   I A   N+ KI+ +    F  
Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILGLEHVNFQS 300

Query: 272 ---AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPD 326
              A   E +     D+         + V+PPR G+  + +  + Q  PH ILY SCN  
Sbjct: 301 LDAASVIENKNENKPDL---------VIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAM 351

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 352 TMGKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389


>gi|161650991|ref|YP_001119583.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           vietnamiensis G4]
          Length = 465

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 26/191 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAREVMGIEGSETLTT 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRR--EREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            A  N   N V+            T A R   E   + L+ +      F    +DPPR G
Sbjct: 347 RALANARENGVDG---------HTTFACRNLFEVTGDDLRALGA----FDKFLIDPPREG 393

Query: 304 --------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353
                    + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T
Sbjct: 394 ALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNT 453

Query: 354 RHMECGVLLVR 364
            H+E   L  R
Sbjct: 454 SHVESIALFER 464


>gi|145630054|ref|ZP_01785836.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R3021]
 gi|144984335|gb|EDJ91758.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R3021]
          Length = 391

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L +L+CG G F L  A+         I    +E +   I A   N+ KI+ +    F  
Sbjct: 241 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILDLEHVNFQS 299

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLC 329
                   N+ ++      +   + V+PPR G+  + +  + Q  PH ILY SCN  ++ 
Sbjct: 300 LDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMG 353

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 354 KDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 388


>gi|134139005|gb|ABO54748.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 434

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 256 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAREVMGIEGSETLTT 315

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   D+ +   F    +DPPR G 
Sbjct: 316 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 363

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 364 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 423

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 424 HVESIALFER 433


>gi|145640626|ref|ZP_01796209.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R3021]
 gi|145274552|gb|EDK14415.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae
           22.4-21]
          Length = 239

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 16/159 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L +L+CG G F L  A+         I    +E +   I A   N+ KI+ +    F  
Sbjct: 89  NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILGLEHVNFQS 147

Query: 272 ---AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPD 326
              A   E +     D+         + V+PPR G+  + +  + Q  PH ILY SCN  
Sbjct: 148 LDAASVIENKNENKPDL---------VIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAM 198

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 199 TMGKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 236


>gi|213029731|ref|ZP_03344178.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 367

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 18/147 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME 357
           D+  L   + I+R+ LFD FP+T H E
Sbjct: 342 DIRHLP-NYRIQRVQLFDMFPHTAHYE 367


>gi|145632344|ref|ZP_01788079.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae 3655]
 gi|229843981|ref|ZP_04464122.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|144987251|gb|EDJ93781.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae 3655]
 gi|229812975|gb|EEP48663.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           6P18H1]
          Length = 391

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L +L+CG G F L  A+         I    +E +   I A   N+ KI+ +    F  
Sbjct: 241 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILDLEHVNFQS 299

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLC 329
                   N+ ++      +   + V+PPR G+  + +  + Q  PH ILY SCN  ++ 
Sbjct: 300 LDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMG 353

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 354 KDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 388


>gi|302771483|ref|XP_002969160.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii]
 gi|300163665|gb|EFJ30276.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii]
          Length = 536

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGN 222
           + ERL    R L++    NSF Q N      + E V  A    +     ++L+L+CG G 
Sbjct: 338 ITERL----RGLVFEISANSFFQTNTSQAEVLYEVVEKACNLTEASSEMNMLDLFCGTGT 393

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A   + V   E+ + +V  AR N   N++ N   ++    + T        F R 
Sbjct: 394 IGLSMANKVNHVYGYELVQEAVANARRNANRNNILNATFIQGDLNKLTSGFG--ANFPR- 450

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHT 340
            DI         I  DP R G+    +  +       ++Y+SCNP +  RDL +L  +  
Sbjct: 451 PDI---------IIADPNRPGMHPKLLQFILKSGAARVVYVSCNPATCARDLDVLCHSKD 501

Query: 341 IERLA---------LFDQFPYTRHMEC 358
              LA           D FP+T H+EC
Sbjct: 502 GSDLAGGYRLLSVQPIDMFPHTPHVEC 528


>gi|309973539|gb|ADO96740.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R2846]
          Length = 391

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L +L+CG G F L  A+         I    +E +   I A   N+ KI+ +    F  
Sbjct: 241 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILDLEHVNFQS 299

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLC 329
                   N+ ++      +   + V+PPR G+  + +  + Q  PH ILY SCN  ++ 
Sbjct: 300 LDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMG 353

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 354 KDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 388


>gi|149184669|ref|ZP_01862987.1| putative RNA methyltransferase [Erythrobacter sp. SD-21]
 gi|148831989|gb|EDL50422.1| putative RNA methyltransferase [Erythrobacter sp. SD-21]
          Length = 397

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 26/180 (14%)

Query: 184 ENSFTQPNAGINVHMLEWVLAA-TKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEI 239
           +NSF QP         E VL + T    GD   + +L+ G G F+  L+    +VLAVE 
Sbjct: 231 QNSFRQPT-----RDGEQVLVSDTAEFVGDARTVADLFAGLGTFAFALSDPA-KVLAVEA 284

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           A+ +      ++A     N++ V +       AM R+   N L   ++   RF  I +DP
Sbjct: 285 ARDA------HLACKTAANMRGVPV------HAMHRDLFRNPLTAEEV--SRFGAIVLDP 330

Query: 300 PRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
           PR+G  +    + Q+    ++Y+SCNP S  RD+ +++     +E+L    QF ++ H+E
Sbjct: 331 PRAGAREQVAQIAQSTASRVVYVSCNPSSWARDVKTLVDAGFRLEKLRPVGQFRWSTHVE 390


>gi|320333842|ref|YP_004170553.1| (Uracil-5)-methyltransferase [Deinococcus maricopensis DSM 21211]
 gi|319755131|gb|ADV66888.1| (Uracil-5)-methyltransferase [Deinococcus maricopensis DSM 21211]
          Length = 407

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 23/154 (14%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LY G+G     LA  F+RV+ V++A+ ++   R +     + NV    +    F    
Sbjct: 273 LDLYGGSGAIGRHLAGQFERVVVVDVAQEALARGRRDAQLEGLRNVSFRHVHDAAF---- 328

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331
                     D D+       I VDPPR+GLD AT   +       ++Y+SC+P +  RD
Sbjct: 329 ---------PDADV-------IVVDPPRAGLDAATRDGIDGSVAGRLVYVSCDPATWARD 372

Query: 332 LS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  ++     +  +   D +P T H+E   +L R
Sbjct: 373 VGDLVRRGWRLGEVTPHDFYPQTSHVEVVSVLSR 406


>gi|315655217|ref|ZP_07908118.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC
           51333]
 gi|315490472|gb|EFU80096.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC
           51333]
          Length = 435

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 14/193 (7%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR-HFDRVLAVEIAKP 242
            +F Q N   +  M        + +Q +   +LYCG G F+  L+     +V  VE+  P
Sbjct: 242 GAFFQTNTAASQAMYTQAATWARELQPETAWDLYCGVGGFAFALSSAGVAQVTGVEVVGP 301

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT-------- 294
           +++ A++ +         +    S +            R   I   + ++ T        
Sbjct: 302 AIDGAKHAVTKLESATATVPVEPSNKNDGTPNIPSAAPRPHFITADATKWATNQKLVPPD 361

Query: 295 -IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR GL       ++    PH++Y SC  ++L  DL  + + + I    L D FP
Sbjct: 362 LVVVNPPRRGLGPELSSWLERSGIPHLIYSSCFQETLVEDLRRMRS-YQIRAAKLVDMFP 420

Query: 352 YTRHMECGVLLVR 364
           +T H+E  VL+ R
Sbjct: 421 HTSHVESVVLMSR 433


>gi|196010802|ref|XP_002115265.1| hypothetical protein TRIADDRAFT_59271 [Trichoplax adhaerens]
 gi|190582036|gb|EDV22110.1| hypothetical protein TRIADDRAFT_59271 [Trichoplax adhaerens]
          Length = 556

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 22/157 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   +++A++ +RV+ +E+ + ++E AR N   N + N++ +          
Sbjct: 403 VLDICCGTGTIGILMAKNVNRVIGIEMVEDAIEDARVNAELNDIKNIEFI---------C 453

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLC 329
            + E +   L D ++         VDPPR+GL    +  ++       ++Y+SCNP    
Sbjct: 454 GKAEDKLPTLVD-NLSVISEVIAIVDPPRAGLHTRVIKALRRSLFIKKLIYVSCNPAMAV 512

Query: 330 RDLSILSTTHT---------IERLALFDQFPYTRHME 357
            +   L +  T         I +    D FPYT   E
Sbjct: 513 TNFVELCSPRTNRLRGQPFKIMKALAVDLFPYTEQCE 549


>gi|221130274|ref|XP_002158803.1| PREDICTED: similar to trm2 tRNA methyltransferase 2 homolog A
           [Hydra magnipapillata]
          Length = 553

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 24/165 (14%)

Query: 213 LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L CG G   + +A++    V+ +EI   +V+ A +N AAN V N K +  ++++   
Sbjct: 333 ILDLCCGTGTIGICIAKNKRLPVVGIEICIQAVQDANFNSAANGVTNAKFICGAAEKVLH 392

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDSL 328
                 E NR+   +I +       VDPPR+GL    +  ++   A   I+++SC+P   
Sbjct: 393 -----NEINRINAKNIIA------IVDPPRAGLHKDVLKCLRSCAAIKKIIFVSCSPKQA 441

Query: 329 CRDLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVR 364
             +L  L    +          +R    D FP T H E  V L R
Sbjct: 442 ADNLIFLCQKQSKRRAGKPFKTKRAVPIDLFPMTPHCELIVELER 486


>gi|241662749|ref|YP_002981109.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia pickettii
           12D]
 gi|240864776|gb|ACS62437.1| RNA methyltransferase, TrmA family [Ralstonia pickettii 12D]
          Length = 496

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 29/198 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L       GD LL+L+CG GNF+L +A     
Sbjct: 305 GITMPFKPTD--FTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRARE 362

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RF 292
           V+ +E ++     A  N   N ++       +  +F       R    +   DI +  +F
Sbjct: 363 VMGIEGSEALTTRALANAQHNGLD-------AKTKFAC-----RNLFEVTADDIAALGKF 410

Query: 293 KTIFVDPPRSGLDDATVGMVQAY-----------PHILYISCNPDSLCRDLSIL--STTH 339
               VDPPR G    +  + +               I+Y+SCNP +L RD  +L     +
Sbjct: 411 DRWLVDPPREGALAVSKALAELSQRGGEEADLLPKRIVYVSCNPATLARDAGLLVHEAGY 470

Query: 340 TIERLALFDQFPYTRHME 357
            +    + + FP+T H+E
Sbjct: 471 RLAGAGVVNMFPHTSHVE 488


>gi|171321351|ref|ZP_02910308.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria MEX-5]
 gi|171093369|gb|EDT38559.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria MEX-5]
          Length = 434

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 256 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSETLTT 315

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   D+ +   F    +DPPR G 
Sbjct: 316 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 363

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 364 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 423

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 424 HVESIALFER 433


>gi|148826391|ref|YP_001291144.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           PittEE]
 gi|229846018|ref|ZP_04466130.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|167012641|sp|A5UDB0|RUMB_HAEIE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|148716551|gb|ABQ98761.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittEE]
 gi|229811022|gb|EEP46739.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           7P49H1]
          Length = 392

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 12/157 (7%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270
           +L +L+CG G F L  A+         I    +E +   I AA+H  + KI+ +    F 
Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 299

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSL 328
                    N+ ++      +   + V+PPR G+       + Q  PH ILY SCN  ++
Sbjct: 300 SLNAASVMENKNEN------KPDLVIVNPPRRGIGKQLSEFLNQIQPHFILYSSCNAMTM 353

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 354 GKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389


>gi|293192606|ref|ZP_06609560.1| putative tRNA (Uracil-5-)-methyltransferase [Actinomyces
           odontolyticus F0309]
 gi|292820113|gb|EFF79110.1| putative tRNA (Uracil-5-)-methyltransferase [Actinomyces
           odontolyticus F0309]
          Length = 431

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 34/166 (20%)

Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAA--------NHVNNVKI 261
           ++ELY G G FS+ LAR      RV+ +E  + +V  A  N+AA         +V+   +
Sbjct: 286 VMELYSGAGLFSVPLARAVGESGRVVTLEGDEGAVRDAGENLAAFDWVDAFAGNVDREGV 345

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHIL 319
           V +S +            + + D+         +  DPPR+G        + A   P ++
Sbjct: 346 VDLSGQ-----------LSAVPDV---------VVADPPRAGAGAEVCEAIAATGAPRVV 385

Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            +SC+P +  RDL  L+   + +E L  +D FP+T H+E   +L R
Sbjct: 386 LVSCDPAAGARDLRTLTEDGYQLESLQAWDLFPHTHHVEMVSVLSR 431


>gi|87199804|ref|YP_497061.1| (Uracil-5)-methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135485|gb|ABD26227.1| 23S rRNA m(5)U-1939 methyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 401

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 21/167 (12%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           EW+  A       + +L+ G G F+  LA    +VLAVE A+   E      AA  +N  
Sbjct: 253 EWLSGAAT-----VADLFSGLGTFAFALAGPATKVLAVEAAR---EPYMVCQAAARMNGR 304

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHI 318
            +  +    F   +R E       ++D    RF  + +DPPR+G  +    +  +    +
Sbjct: 305 PVHALHRDLFRNPLRVE-------ELD----RFAAVLIDPPRAGAQEQVEQIAASKVARV 353

Query: 319 LYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +Y+SCNP S  RD + +++  + +  +    QF ++ H+E   L +R
Sbjct: 354 VYVSCNPASWARDAVRLIAGGYRLAEVRPVGQFRWSTHVELASLFIR 400


>gi|302784258|ref|XP_002973901.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii]
 gi|300158233|gb|EFJ24856.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii]
          Length = 536

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 31/207 (14%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGN 222
           + ERL    R L++    NSF Q N      + E V  A    +     ++L+L+CG G 
Sbjct: 338 ITERL----RGLVFEISANSFFQTNTSQAEVLYEVVEKACNLTEASSEMNMLDLFCGTGT 393

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A   + V   E+ + +V  AR N   N++ N   ++    + T        F R 
Sbjct: 394 IGLSMANKVNHVYGYELVQEAVANARRNANRNNILNATFIQGDLNKLTSGFG--GNFPR- 450

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHT 340
            DI         I  DP R G+    +  +       ++Y+SCNP +  RDL +L  +  
Sbjct: 451 PDI---------IITDPNRPGMHPKLLQFILKSGAARVVYVSCNPATCARDLDVLCHSKD 501

Query: 341 IERLA---------LFDQFPYTRHMEC 358
              LA           D FP+T H+EC
Sbjct: 502 GSDLAGGYRLLSVQPIDMFPHTPHVEC 528


>gi|239831306|ref|ZP_04679635.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Ochrobactrum
           intermedium LMG 3301]
 gi|239823573|gb|EEQ95141.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Ochrobactrum
           intermedium LMG 3301]
          Length = 413

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG G F+L +A     V AVE    ++  A  +    HV  +K V +  ++  +   
Sbjct: 274 DLFCGVGTFALRIAEK-SAVHAVE--NDALALAALDRGVRHVQGLKPVSVERRDLFRRPL 330

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
             +E             +  +  DPPR+G ++  + + ++    ++ +SCNP +L RDL+
Sbjct: 331 MPKEL----------LPYNAVVFDPPRAGAEEQALELAKSKVEKVVAVSCNPVTLARDLA 380

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           IL    + + R+   DQF ++ H+E    LV+K
Sbjct: 381 ILVKGGYRVTRVTPIDQFLWSPHVEAVATLVKK 413


>gi|302413229|ref|XP_003004447.1| tRNA (uracil-5-)-methyltransferase [Verticillium albo-atrum
           VaMs.102]
 gi|261357023|gb|EEY19451.1| tRNA (uracil-5-)-methyltransferase [Verticillium albo-atrum
           VaMs.102]
          Length = 559

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 27/166 (16%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFT 270
           L++ Y G+G F++ L+  F   + ++IA  S+ +AR N   N    +    +   + E  
Sbjct: 403 LIDAYSGSGLFTITLSGIFKTSMGIDIAADSIASARKNALLNSFTEDQCTFLAADAPELF 462

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           + +R + +                + +DPPR G D + +G +  +    ++Y+SCN  + 
Sbjct: 463 KHVRYDPDET-------------VVILDPPRKGCDASFLGQLLDFGPRRVVYVSCNVHTQ 509

Query: 329 CRDLSIL----------STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +L           T + IE L  FD FP T H+E   +L R
Sbjct: 510 ARDVGVLVRGEVEGQKKRTRYEIESLRGFDFFPQTGHVEGVAVLNR 555


>gi|301169683|emb|CBW29284.1| 23S rRNA m(5)U747 methyltransferase [Haemophilus influenzae 10810]
          Length = 392

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270
           +L +L+CG G F L  A+         I    +E +   I AA+H  + KI+ +    F 
Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 299

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSL 328
                    N+ ++      +   + V+PPR G+  + +  + Q  PH ILY SCN  ++
Sbjct: 300 SLNAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTM 353

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 354 GKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389


>gi|321474913|gb|EFX85877.1| hypothetical protein DAPPUDRAFT_208793 [Daphnia pulex]
          Length = 530

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 30/173 (17%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++L++ CG G   L LA+   RV  VE+ + +VE AR N + N + N   V         
Sbjct: 364 NILDVCCGTGTIGLSLAKKCRRVYGVELVESAVEDARSNASKNGITNCVFV--------- 414

Query: 272 AMRREREFNRL------KDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAYPHI---LYI 321
           A + E E N L      KD++      K + + DPPR+GL      ++++   I   +YI
Sbjct: 415 AGKAEDEVNNLIDGIKQKDLEEGVEGGKIVAILDPPRAGLHKKCCQLLRSAERIERLIYI 474

Query: 322 SCNPDSLCRDLSILSTTHT----------IERLALFDQFPYTRHMECGVLLVR 364
           SCN  +  +    L    +          ++ +A+ D FP T H E  ++L R
Sbjct: 475 SCNAQAAMKSFIDLCRAQSNAYGGIPFIPVKAMAV-DLFPDTPHCEFILVLER 526


>gi|145640956|ref|ZP_01796538.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021]
 gi|145274470|gb|EDK14334.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
          22.4-21]
          Length = 79

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 36/54 (66%)

Query: 5  LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
          L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD 
Sbjct: 3  LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDF 56


>gi|260581961|ref|ZP_05849757.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae
           NT127]
 gi|260095154|gb|EEW79046.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae
           NT127]
          Length = 392

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L +L+CG G F L  A+         I    +E +   I A   N+ KI+ +    F  
Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILDLEHVNFQS 300

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329
                   N+ ++      +   + V+PPR G+  + +  + Q  PH ILY SCN  ++ 
Sbjct: 301 LDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMG 354

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 355 KDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389


>gi|118473429|ref|YP_887104.1| RNA methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118174716|gb|ABK75612.1| putative RNA methyltransferase [Mycobacterium smegmatis str. MC2
           155]
          Length = 397

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 215 ELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LY G G F+  LA        V+ V+ ++ S  +AR  +A   + +V ++       T 
Sbjct: 259 DLYGGAGVFAASLAEQVGESGHVVTVDTSRGSSRSARAALA--DLKSVSVI-------TD 309

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329
           ++RR         +     R     +DPPR+G +   +  + A   P I++I C   S  
Sbjct: 310 SVRRA--------LATQHQRADVAVLDPPRTGANREVIDQIAAADVPRIIHIGCEAASFA 361

Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD+ + L   + +E + +FD FP T H+EC  +L R
Sbjct: 362 RDVGLYLRHGYHVEEIRVFDSFPLTHHIECVAVLNR 397


>gi|296125501|ref|YP_003632753.1| (uracil-5)-methyltransferase [Brachyspira murdochii DSM 12563]
 gi|296017317|gb|ADG70554.1| (Uracil-5)-methyltransferase [Brachyspira murdochii DSM 12563]
          Length = 397

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 32/154 (20%)

Query: 213 LLELYCGNGNFSLVLA---RHFDR---VLAVEIAKPSVE-AARYNIAANHVNNVKIVRMS 265
           ++ELY G+G F+  +    + F++    ++ EI+K SV  A +YN               
Sbjct: 259 IIELYAGSGFFTAAIESKLKSFNKEYKFISSEISKDSVYIANKYNFN------------- 305

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISC 323
                  ++ E  F  LK+I+   Y    + +DPPR G+D  T+   +      I+Y+SC
Sbjct: 306 -------IKNEESFITLKNIN---YDIDALVLDPPREGIDKKTINEIIRIKPKKIIYVSC 355

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           +P +  RD+++L   + +  L++ D F  T H+E
Sbjct: 356 DPMTFSRDINLLKDYYKLSDLSIIDMFADTYHIE 389


>gi|238926776|ref|ZP_04658536.1| TrmA family RNA methyltransferase [Selenomonas flueggei ATCC 43531]
 gi|238885308|gb|EEQ48946.1| TrmA family RNA methyltransferase [Selenomonas flueggei ATCC 43531]
          Length = 465

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 27/188 (14%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ E  + Q     ++H  E V+ A           YCG G  +L LA+   +V  +EI 
Sbjct: 300 RQAERLYEQALTYADLHGTETVIDA-----------YCGTGTITLFLAQKARKVYGIEIV 348

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +P++  AR N   N+V N + +   +     A+ ++              R   + VDPP
Sbjct: 349 QPAILDARKNARDNNVKNAEFIVGDATAVMPALYKQ------------GIRPDVVVVDPP 396

Query: 301 RSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           R G  +  +       P  I+Y+SCNP +L RDL+IL    +  + +   D FP T H+E
Sbjct: 397 RVGCTETVLRTFANMKPQRIVYVSCNPATLARDLAILKELGYLAQEVQPVDLFPQTSHVE 456

Query: 358 CGVLLVRK 365
             V L+RK
Sbjct: 457 -NVCLLRK 463


>gi|320094745|ref|ZP_08026494.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319978309|gb|EFW09903.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 391

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 37/196 (18%)

Query: 186 SFTQPNAGINVHM----LEWVLAATKG--IQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           SFTQ NA +   +     +W      G      L +LYCG G F+L    H        +
Sbjct: 211 SFTQTNAAVAGRLYRQAAQWASLPLPGGAAPSSLWDLYCGVGGFAL----HASHAGVPAV 266

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSK---EFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               V  A    A +    + + R  ++   +   A  R +  +   D+         + 
Sbjct: 267 TGVEVSEAAIASAISRARALGLTRDQARFVADDATAWARAQSASGAPDV---------VV 317

Query: 297 VDPPRSG--------LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348
           V+PPR G        LD  T       P ++Y SCNP +L +DL+ + +  T     +FD
Sbjct: 318 VNPPRRGIGLELASWLDGCTA------PRVIYSSCNPTTLAKDLAAMPSLRTTHGR-VFD 370

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E  VLL R
Sbjct: 371 MFPHTAHVEAAVLLER 386


>gi|291408091|ref|XP_002720420.1| PREDICTED: TRM2 tRNA methyltransferase 2 homolog B isoform 1
           [Oryctolagus cuniculus]
          Length = 503

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 28/197 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           ++F Q N      ML   +    G+  +  LL++ CG G   L LA+H  +VL +E+ + 
Sbjct: 318 DAFFQVNTA-GAEMLYQTVGELSGVNANTILLDICCGTGAIGLSLAQHASQVLGIELVEQ 376

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +VE AR+  A N + N +     +++    + + +E            +     V+PPR+
Sbjct: 377 AVEDARWTAAFNGITNCEFHAGRAEKILPWLLKSKE----------GVQPVVAVVNPPRA 426

Query: 303 GLDDATVGMV---QAYPHILYISC--------NPDSLC----RDLSILSTTHTIERLALF 347
           GL    V  +   +A   ++++SC        N   LC        +L     + +    
Sbjct: 427 GLHHRVVQAIRNCRAIRTLVFVSCKLHGETTRNITELCCPPDSAKKLLGEPFVLRQAVPV 486

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H E  +L  R
Sbjct: 487 DLFPHTAHCELALLCTR 503


>gi|289825022|ref|ZP_06544385.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 368

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 18/148 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMEC 358
           D+  L   + I+R+ LFD FP  R M+C
Sbjct: 342 DIRHLP-NYRIQRVQLFDMFPLPRIMKC 368


>gi|241958416|ref|XP_002421927.1| tRNA (uracil-5-)-methyltransferase, putative; transfer RNA
           methyltransferase, putative [Candida dubliniensis CD36]
 gi|223645272|emb|CAX39928.1| tRNA (uracil-5-)-methyltransferase, putative [Candida dubliniensis
           CD36]
          Length = 553

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 99/202 (49%), Gaps = 21/202 (10%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232
            +++   N F Q N  I   +L+++   +  +     +L++ YCG G F + L++ F+  
Sbjct: 357 FLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIALSKSFNEN 416

Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            ++  +E+ + +++ A +N   N ++  + V+  S + +     ++     K   I S +
Sbjct: 417 TKIFGIELVEQAIKYANHNAKLNGLDPER-VQFVSGDASNIFNNDK----FKKSGI-SGK 470

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHIL-YISCNPDSLCRDLSIL-------STTHTIE 342
              + VDP R G +++ +  +  + P I+ Y+SCN  S  RDL+         +  + ++
Sbjct: 471 NSVVIVDPSRKGSNESFLQQLLNFEPEIVVYVSCNVFSQARDLATFENLQQHTNVKYKVK 530

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +  FD FP T+H+E   +L +
Sbjct: 531 DVMGFDFFPQTKHVESIAILEK 552


>gi|183219518|ref|YP_001837514.1| putative tRNA (uracil-5-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189909660|ref|YP_001961215.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774336|gb|ABZ92637.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777940|gb|ABZ96238.1| Putative tRNA (uracil-5-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 399

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G  S  +A     VL +E    S   A  ++  N V+NV+  +    E    
Sbjct: 256 VIDAYSGIGTISFWIAGQSKEVLGIEENPNSHRTALESLKYNKVHNVRFRKGRVAEVLPT 315

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCR 330
           +              +   + TI +DPPR+GL       + A  +  I+Y+SC+P SL  
Sbjct: 316 L--------------YGKNYDTIVLDPPRTGLGAEVTETILAMGFKKIVYVSCDPMSLRE 361

Query: 331 DLSILSTTHTIERLALFDQFPYTRHME 357
           D  +L+  + +  L   D FP T H+E
Sbjct: 362 DSILLTKQYFLNSLQPVDMFPRTDHVE 388


>gi|86136790|ref|ZP_01055368.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           MED193]
 gi|85826114|gb|EAQ46311.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           MED193]
          Length = 415

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SF Q        +L  VL  TKG +  +++ + G G FSL LA   + VLA+E      
Sbjct: 242 GSFLQATRDGEAALLAGVLEITKGAK-RIVDFFAGCGTFSLPLAAQAE-VLALE-----G 294

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR--FKTIFVDPPRS 302
           E A      N     + ++  + E     R     N L   D+  +   ++   +DPPR+
Sbjct: 295 EPAMIKALENGWRQARGLKKVTAEVRDLFR-----NPLLPEDLKPFGAFYEAAVIDPPRA 349

Query: 303 GLDDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
           G +     + +A  P I Y+SCNP +  RD  +++   + +  + + DQF ++ H E
Sbjct: 350 GAEAQVAQLAEARMPVIAYVSCNPVTFARDAKALVEAGYGLNWVQVVDQFRWSAHTE 406


>gi|238879827|gb|EEQ43465.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 588

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 98/202 (48%), Gaps = 21/202 (10%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232
            +++   N F Q N  I   +L+++   +  +     +L++ YCG G F + L++ F+  
Sbjct: 392 FLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIALSKSFNEN 451

Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            ++  +E+ + +++ A +N   N ++  + V+  S + +     E      K   I S +
Sbjct: 452 TKIFGIELVEQAIKYANHNAKLNGLDPER-VQFVSGDASNIFNNEN----FKKSGI-SGK 505

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHIL-YISCNPDSLCRDLSIL-------STTHTIE 342
              + VDP R G +++ +  +  + P I+ Y+SCN  S  RDL+         +  + ++
Sbjct: 506 NSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQQNTNVKYKVK 565

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +  FD FP T+H+E   +L +
Sbjct: 566 DVMGFDFFPQTKHVESIAILEK 587


>gi|145634134|ref|ZP_01789845.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittAA]
 gi|145268578|gb|EDK08571.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittAA]
          Length = 193

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 16/159 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L +L+CG G F L  A+         I    +E +   I A   N+ KI+ +    F  
Sbjct: 43  NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAAS-NSAKILDLEHVNFQS 101

Query: 272 ---AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPD 326
              A   E +     D+         + V+PPR G+  + +  + Q  PH ILY SCN  
Sbjct: 102 LDAASVIENKNENKPDL---------VIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAM 152

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 153 TMGKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 190


>gi|170733177|ref|YP_001765124.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           cenocepacia MC0-3]
 gi|169816419|gb|ACA91002.1| RNA methyltransferase, TrmA family [Burkholderia cenocepacia MC0-3]
          Length = 465

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   D+ +   F    +DPPR G 
Sbjct: 347 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 394

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 395 LAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 455 HVESIALFER 464


>gi|260576139|ref|ZP_05844132.1| (Uracil-5)-methyltransferase [Rhodobacter sp. SW2]
 gi|259021619|gb|EEW24922.1| (Uracil-5)-methyltransferase [Rhodobacter sp. SW2]
          Length = 412

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 21/150 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA---RYNIAANHVNNVKIVRMSSKEF 269
           +++L+ G G F+L LA + + VLAVE      EAA     +        +K V  ++++ 
Sbjct: 266 IVDLFAGVGTFALPLAENAE-VLAVE-----AEAAMMMALDKGWRQAEGLKRVTATTRDL 319

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSL 328
               RR  E +  K ID        + +DPPR+G +  T  + +A  P I  +SCNP + 
Sbjct: 320 ---FRRPLEPDEFKGID-------AVVIDPPRAGAEAQTATLARAQVPVIAAVSCNPVTF 369

Query: 329 CRDLSI-LSTTHTIERLALFDQFPYTRHME 357
            RD  + L+  + ++ +   DQF ++ H+E
Sbjct: 370 ARDTRVLLAAGYHLDWVQTVDQFRWSAHVE 399


>gi|258542731|ref|YP_003188164.1| ribosomal RNA large subunit 23S/tRNA (uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256633809|dbj|BAH99784.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636868|dbj|BAI02837.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639921|dbj|BAI05883.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642977|dbj|BAI08932.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646032|dbj|BAI11980.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649085|dbj|BAI15026.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652072|dbj|BAI18006.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655129|dbj|BAI21056.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 432

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ELY G G  +  LA H  RV A E   P++EA +       ++               
Sbjct: 284 ITELYAGCGTLTFPLAEHA-RVNAYEGYAPALEALKKATGGTRISPFC------------ 330

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD 331
               R+ N    +         + +DPP +G       + Q  P HI+Y+SCNP +L +D
Sbjct: 331 ----RDLNHQPLLAKEIAASAVVVLDPPHAGAKLQMRQIAQGLPNHIVYVSCNPAALVQD 386

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVRKPS 367
            S+L+   +T+E + + DQF ++  +E      R+ S
Sbjct: 387 ASLLAKAGYTVENVTVIDQFLWSAEIEAVCSFKRESS 423


>gi|172060777|ref|YP_001808429.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia ambifaria
           MC40-6]
 gi|171993294|gb|ACB64213.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria MC40-6]
          Length = 484

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 306 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 365

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   D+ +   F    +DPPR G 
Sbjct: 366 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 413

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 414 LAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 473

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 474 HVESIALFER 483


>gi|107029004|ref|YP_626099.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           cenocepacia AU 1054]
 gi|116689838|ref|YP_835461.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           cenocepacia HI2424]
 gi|254248066|ref|ZP_04941387.1| tRNA (uracil-5-)-methyltransferase/TrmA [Burkholderia cenocepacia
           PC184]
 gi|123179925|sp|Q1BGX9|RUMA_BURCA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|143580671|sp|A0K7U1|RUMA_BURCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|105898168|gb|ABF81126.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia cenocepacia AU
           1054]
 gi|116647927|gb|ABK08568.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|124872842|gb|EAY64558.1| tRNA (uracil-5-)-methyltransferase/TrmA [Burkholderia cenocepacia
           PC184]
          Length = 465

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   D+ +   F    +DPPR G 
Sbjct: 347 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 394

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 395 LAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 455 HVESIALFER 464


>gi|170703615|ref|ZP_02894357.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria
           IOP40-10]
 gi|170131472|gb|EDT00058.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria
           IOP40-10]
          Length = 484

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 306 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSETLTT 365

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   D+ +   F    +DPPR G 
Sbjct: 366 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 413

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 414 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 473

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 474 HVESIALFER 483


>gi|269792184|ref|YP_003317088.1| (Uracil-5)-methyltransferase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099819|gb|ACZ18806.1| (Uracil-5)-methyltransferase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 353

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 16/160 (10%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           + G+     +LYCG+G     L+      L VEI+  ++  A+ N  ++ +      +  
Sbjct: 205 SPGVGLGAADLYCGDGVSLRALSSAGAETLGVEISGLALRMAKLNSPSSKLLQGTCAQ-R 263

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323
           + +    M R +E  RL             +V+PPRSGL+   V ++       + Y+SC
Sbjct: 264 TPQIGLFMSRFQENQRLA------------YVNPPRSGLEAEVVDLLGTTKVRRLAYLSC 311

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           +  +L RDL +L    +   ++  +D FP+T H+EC  LL
Sbjct: 312 SAGTLNRDLDMLEARGYRCRKIIPYDFFPWTDHVECLALL 351


>gi|145628105|ref|ZP_01783906.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145638219|ref|ZP_01793829.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittII]
 gi|144979880|gb|EDJ89539.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145272548|gb|EDK12455.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittII]
 gi|309751374|gb|ADO81358.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R2866]
          Length = 391

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 18/160 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270
           +L +L+CG G F L  A+         I    +E +   I AA+H  + KI+ +    F 
Sbjct: 241 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 298

Query: 271 Q---AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNP 325
               A   E +     D+         + V+PPR G+  + +  + Q  PH ILY SCN 
Sbjct: 299 SLDAASLIENKNENKPDL---------VIVNPPRRGIGKELSEFLNQIQPHFILYSSCNA 349

Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            ++ +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 350 MTMGKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 388


>gi|83309427|ref|YP_419691.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Magnetospirillum
           magneticum AMB-1]
 gi|82944268|dbj|BAE49132.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Magnetospirillum
           magneticum AMB-1]
          Length = 438

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 80/180 (44%), Gaps = 25/180 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKP 242
             F QP  G  + + E +L+AT K +   + +LY G G+FSL LA R   R         
Sbjct: 270 GGFLQPTRGGELAIAEAILSATPKDVP--VADLYSGCGSFSLPLALRGPVR--------- 318

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +VE  +  +AA            + E     RR    + LK        F+ I +DPPR+
Sbjct: 319 AVEGEQGPVAALEAAARAASLPLTAEVRDLARRPLAAHELKG-------FRAIVLDPPRA 371

Query: 303 GLDDATVGMVQAYPH----ILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHME 357
           G       + +  P     I  +SCNP +L RDL  L      I+R+   DQFP++ H+E
Sbjct: 372 GAAAQAAELARPSPGGPTTIAMVSCNPATLARDLRTLCDGGWRIKRVVPIDQFPWSAHLE 431


>gi|312113130|ref|YP_004010726.1| (uracil-5)-methyltransferase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218259|gb|ADP69627.1| (Uracil-5)-methyltransferase [Rhodomicrobium vannielii ATCC 17100]
          Length = 443

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 17/175 (9%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    +E + AA  G +G + +L+ G G F+  +A            + SV A   N AA
Sbjct: 272 MGAFTVEALDAAGAG-KGPVCDLFAGLGAFTFPVA-----------TRASVTAYEDNAAA 319

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
               +         +  +A+RR+   + L   ++++  F    +DPPR G +     + Q
Sbjct: 320 VAALSAAAKESKGLKPVKAIRRDLFRSPLGFQELNA--FAAAVLDPPREGAEAQARALAQ 377

Query: 314 AY-PHILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRKP 366
           +  P  + +SCNP +  RD +IL+     + RLA FDQF Y+ H+E   L  R+P
Sbjct: 378 SKIPAAVMLSCNPATFARDAAILAEGGFELTRLAAFDQFRYSAHVEVAALF-RRP 431


>gi|332017236|gb|EGI58019.1| tRNA (uracil-5-)-methyltransferase-like protein A [Acromyrmex
           echinatior]
          Length = 562

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 28/213 (13%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           +Y++E L      + +R    +F Q N  G  V     +  A   +   LL++ CG G  
Sbjct: 359 EYIEETLL----GMKFRVSPQAFFQVNTLGAEVLYKAAIDLAEPTMDTALLDVCCGTGTI 414

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  +++   VL VEI   +++ A+ N   N + N +     +++    +       R  
Sbjct: 415 GLCFSKYCGEVLGVEIIPDAIQDAKENAVKNEIKNCEFFVGKAEDILLPI-----IQRTT 469

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340
             +I      T  VDPPR+GL      T+   +    ++YISC+P +  ++L  L+   +
Sbjct: 470 KSNI------TAIVDPPRAGLHQKALLTLRKSKKLNRLVYISCDPRAAMKNLIDLARPSS 523

Query: 341 IERLA---------LFDQFPYTRHMECGVLLVR 364
            + L            D FP+T+H E  + L R
Sbjct: 524 KQYLGEPLVPVKAIAVDMFPHTKHCELILCLER 556


>gi|322383954|ref|ZP_08057684.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151431|gb|EFX44618.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 536

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 18/184 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +F Q N    VH+ ++V  A   + GD  +++ YCG G   L LA     V  +EI   +
Sbjct: 363 AFFQLNPSQTVHLYDYVKEAA-ALTGDELVVDAYCGTGTIGLWLAPLACEVRGIEIIDDA 421

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ AR N   + + N +     +++      RE     +  +D               +G
Sbjct: 422 VQDARRNAERSGLGNARFYTGRAEKLLPQWVREGVRPDVVVVDPPR------------TG 469

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
            D A +  + A   P ++Y+SCNP +L +D  ++L   ++ E +   D FP T H+EC +
Sbjct: 470 CDAALLRAILAAKPPRLVYVSCNPSTLAKDCRTLLGGGYSAEWVQPVDMFPQTAHVECVI 529

Query: 361 LLVR 364
            + R
Sbjct: 530 RIQR 533


>gi|306845067|ref|ZP_07477647.1| 23S ribosomal RNA uracil-5-methyltransferase rumA [Brucella sp.
           BO1]
 gi|306274482|gb|EFM56277.1| 23S ribosomal RNA uracil-5-methyltransferase rumA [Brucella sp.
           BO1]
          Length = 415

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|163842718|ref|YP_001627122.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella suis ATCC
           23445]
 gi|163673441|gb|ABY37552.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella suis ATCC
           23445]
          Length = 415

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|260431992|ref|ZP_05785963.1| tRNA (Uracil-5-)-methyltransferase superfamily protein
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415820|gb|EEX09079.1| tRNA (Uracil-5-)-methyltransferase superfamily protein
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 409

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+ G G FSL LA+  + V AVE A            A+    +      S    Q 
Sbjct: 265 VVDLFAGCGTFSLPLAQRAE-VHAVEGA------------ADMTRALDQGWRKSTGLKQV 311

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRD 331
               R+  R   +     RF  + +DPPR+G +     + +A  P I Y+SCNP +  RD
Sbjct: 312 TTEARDLFRRPLMPDELRRFDAVVLDPPRAGAEAQVAELAEARRPVIAYVSCNPVTFARD 371

Query: 332 LSIL-STTHTIERLALFDQFPYTRHME 357
             IL    + +E + + DQF ++ H E
Sbjct: 372 AKILVQEGYALEWVQVVDQFRWSSHSE 398


>gi|113868344|ref|YP_726833.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia eutropha H16]
 gi|122946761|sp|Q0K956|RUMA_CUPNH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|113527120|emb|CAJ93465.1| tRNA (Uracil-5-)-methyltransferase [Ralstonia eutropha H16]
          Length = 441

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 24/183 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L        D LL+L+CG GNF+L LA     V+ +E      E
Sbjct: 263 FTQVNHQINRVLIGRALRLLDAQPQDRLLDLFCGIGNFTLPLATQGKSVMGIE----GSE 318

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
           A      AN   N    R    EF       R    +   DI +  RF    VDPPR G 
Sbjct: 319 ALTTRALANAEYNGLAAR---TEFAC-----RNLFEVTAEDIAALGRFDRWLVDPPREGA 370

Query: 304 ------LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                 L +         P  I+Y+SC+P +L RD  +L     + +    + + FP+T 
Sbjct: 371 LAVCKALGELAQQGSNVLPQRIVYVSCSPATLARDAGLLVHGAGYRLAGAGVVNMFPHTS 430

Query: 355 HME 357
           H+E
Sbjct: 431 HVE 433


>gi|296191372|ref|XP_002743598.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Callithrix
           jacchus]
          Length = 621

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 25/170 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  +L+L +   RV+ VE+   +VE AR N   N ++NV+     +++   A
Sbjct: 432 VLDVCCGTGTIALLLFQKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPA 491

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    +  ++   +   +LY+SCNP +  
Sbjct: 492 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAENLRRLLYVSCNPRAAM 540

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368
                LCR  S  +        +    D FP T H E  +L   V  P+G
Sbjct: 541 GNFVDLCRAPSNRVKGIPFQPVKAVAVDLFPQTPHCEMLILFERVEHPNG 590


>gi|94497587|ref|ZP_01304156.1| (Uracil-5)-methyltransferase [Sphingomonas sp. SKA58]
 gi|94423004|gb|EAT08036.1| (Uracil-5)-methyltransferase [Sphingomonas sp. SKA58]
          Length = 405

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 22/176 (12%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--S 243
           SF Q        + + V AA     G + +L+CG G F+L          A    +P  +
Sbjct: 241 SFLQATPDGEAALTDAVRAALPAT-GAVADLFCGLGTFAL----------AAGEGRPVYA 289

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            EAAR  I    +   +  R  + +     RR      L        RF  + +DPPR+G
Sbjct: 290 AEAARDVILQLKMAAGRAQRRLAADHRDLFRRPLTPEELN-------RFAAVILDPPRAG 342

Query: 304 LDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357
             +  + +VQA  P I Y+SCNP S  RD + L+   + +E +    QF ++ H+E
Sbjct: 343 AREQVLQLVQADVPTIAYVSCNPASFARDAAHLTAAGYRLESVRPVGQFRWSTHVE 398


>gi|311271117|ref|XP_001927820.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Sus
           scrofa]
          Length = 621

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 23/164 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ VE+++ +V+ AR N   N ++NV+     +++    
Sbjct: 432 VLDVCCGTGTIGLALARKVKRVVGVELSQEAVDDARVNALDNELSNVEFHCGRAEDLVPP 491

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    +  V+   +   +LY+SC+P +  
Sbjct: 492 L-----VSRLASQQL------VAILDPPRAGLHSKVILAVRRAENLRRLLYVSCSPRAAM 540

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +        +    D FP T H E  +L  R
Sbjct: 541 GNFVDLCRAPSNRVKGMPFRPVKAVAVDLFPQTPHCEMLILFER 584


>gi|162447304|ref|YP_001620436.1| tRNA (uracil-5-)-methyltransferase, SAM dependent [Acholeplasma
           laidlawii PG-8A]
 gi|161985411|gb|ABX81060.1| tRNA (uracil-5-)-methyltransferase, SAM dependent [Acholeplasma
           laidlawii PG-8A]
          Length = 430

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 25/184 (13%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPS 243
           SF Q N  + + M + +   T+     +++ Y G  +    + ++ D  +V A+E    S
Sbjct: 268 SFFQVNKDVAILMYDEIKKLTQN--HTVIDAYAGMAS----IGQYIDAKKVYAIESNLDS 321

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +  A+  +  N V++V+++    +E  +A  +  +                I  DPPRSG
Sbjct: 322 IIQAKKILKVNQVDHVELIHGQVEEKLEAYIKHAD---------------AIVFDPPRSG 366

Query: 304 LDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L ++ + +V+      I+Y+SC+  SL RD++ L   + I+++     FP T HME   L
Sbjct: 367 LTESIIELVKLNQIKTIVYVSCDLKSLARDINGLKDLYDIKKIIPVRMFPSTIHMETITL 426

Query: 362 LVRK 365
           L  K
Sbjct: 427 LSLK 430


>gi|313902590|ref|ZP_07835990.1| RNA methyltransferase, TrmA family [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467156|gb|EFR62670.1| RNA methyltransferase, TrmA family [Thermaerobacter subterraneus
           DSM 13965]
          Length = 631

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 24/155 (15%)

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           RV A+E+   +   AR N   N +  V+ +  + ++    +  E +          +   
Sbjct: 473 RVTAIEVVSEATADARVNAERNGLQGVEFITGAVEDVLPRLAAESQGGAGGGDGAAARGG 532

Query: 293 KT--IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHT-------- 340
           +   I +DPPR G + A +        P I+Y+SCNP +L RDL++L  T +        
Sbjct: 533 RPDGILLDPPRKGCEPAALAACLELAPPRIVYVSCNPVTLARDLAVLCDTGSPAAPAVHG 592

Query: 341 ------------IERLALFDQFPYTRHMECGVLLV 363
                       +E +   D FP+T H+EC  LLV
Sbjct: 593 SGRRRGRRARYRLEAVQPVDMFPHTAHVECAALLV 627


>gi|323526136|ref|YP_004228289.1| TrmA family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383138|gb|ADX55229.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1001]
          Length = 474

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 295 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARIAREVVGIEGSEVLTS 354

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V            F      E   + L+ +      F    +DPPR G  
Sbjct: 355 RALANAELNGV-------AGHTSFACRNLFEVTADDLRALG----HFDKFLIDPPREGAL 403

Query: 304 -LDDATVGMVQA----YP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
            +  A   + Q+     P  I+Y+SCNP +L RD  +L     + +    + + FP+T H
Sbjct: 404 AVSKALAEIAQSGNGPLPRRIVYVSCNPSTLARDSGLLVHEAGYRLVGAGVVNMFPHTSH 463

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 464 VESIALFER 472


>gi|291408093|ref|XP_002720421.1| PREDICTED: TRM2 tRNA methyltransferase 2 homolog B isoform 2
           [Oryctolagus cuniculus]
          Length = 459

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 28/197 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           ++F Q N      ML   +    G+  +  LL++ CG G   L LA+H  +VL +E+ + 
Sbjct: 274 DAFFQVNTA-GAEMLYQTVGELSGVNANTILLDICCGTGAIGLSLAQHASQVLGIELVEQ 332

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +VE AR+  A N + N +     +++    + + +E            +     V+PPR+
Sbjct: 333 AVEDARWTAAFNGITNCEFHAGRAEKILPWLLKSKE----------GVQPVVAVVNPPRA 382

Query: 303 GLDDATVGMV---QAYPHILYISC--------NPDSLC----RDLSILSTTHTIERLALF 347
           GL    V  +   +A   ++++SC        N   LC        +L     + +    
Sbjct: 383 GLHHRVVQAIRNCRAIRTLVFVSCKLHGETTRNITELCCPPDSAKKLLGEPFVLRQAVPV 442

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H E  +L  R
Sbjct: 443 DLFPHTAHCELALLCTR 459


>gi|306842277|ref|ZP_07474939.1| 23S ribosomal RNA uracil-5-methyltransferase [Brucella sp. BO2]
 gi|306287585|gb|EFM59036.1| 23S ribosomal RNA uracil-5-methyltransferase [Brucella sp. BO2]
          Length = 415

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|283782980|ref|YP_003373734.1| TRAM domain protein [Gardnerella vaginalis 409-05]
 gi|283441528|gb|ADB13994.1| TRAM domain protein [Gardnerella vaginalis 409-05]
          Length = 471

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 36/223 (16%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNFSLVLAR 229
           RT  Y      F Q +     H++ +VL   +   G       L +LY G+G F++ LA 
Sbjct: 252 RTFDYDVDARGFWQIHRAAPEHLVNYVLGLVRSALGGRSKNTVLWDLYSGSGLFTIPLAT 311

Query: 230 ----------HFD-----------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
                      +D           RVL++E A  +V+ AR NI    ++   +V     +
Sbjct: 312 LANVGGDSYGAYDAVGAFGAAEPARVLSIEGAPIAVKNARRNIGRAGLSR-DVVEALEGD 370

Query: 269 FTQAMRREREFNRLKDIDIHSYRFK---TIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
             Q +  +  F   K   I   RF     + +DPPR+G        +       ++Y++C
Sbjct: 371 VAQTLESQ-VFKASKSSKI-VRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGARSVVYVAC 428

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +P SL RD+   S   ++++ L +FD +P T H E   LL + 
Sbjct: 429 DPTSLARDVGTFSELGYSVQSLRVFDIYPNTHHTESVALLYKS 471


>gi|148990104|ref|ZP_01821344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924498|gb|EDK75586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP6-BS73]
          Length = 120

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALF 347
           YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   + +  +   
Sbjct: 42  YRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDLHYIQSV 101

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP+T   E  V L++K
Sbjct: 102 DMFPHTARTEAVVKLIKK 119


>gi|39934025|ref|NP_946301.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|51316644|sp|Q6NB80|Y948_RHOPA RecName: Full=Uncharacterized RNA methyltransferase RPA0948
 gi|39647873|emb|CAE26392.1| possible hypothetical RNA methyltransferase [Rhodopseudomonas
           palustris CGA009]
          Length = 412

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q  A +    L  +  A  G    + +L+CG G F+L LA    RV A +   P+V
Sbjct: 245 GAFLQATA-LGEQTLAELAMAKLGRAKQVADLFCGVGPFALRLAEKA-RVFACDSDAPAV 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A +   AA   + +K V+  +++     RR      L+D       F  +  DPPR G 
Sbjct: 303 TALQK--AAPATSGLKPVKAEARDL---FRRPLAPPELRD-------FDAVLFDPPRQGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
                 +  +  P ++ +SCN  +  RD  +L    + +ER+   DQF YT H+E
Sbjct: 351 QAQAAQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKYTPHVE 405


>gi|62289423|ref|YP_221216.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82699350|ref|YP_413924.1| SAM-binding domain-containing protein [Brucella melitensis biovar
           Abortus 2308]
 gi|189023674|ref|YP_001934442.1| SAM (and some other nucleotide) binding motif [Brucella abortus
           S19]
 gi|237814911|ref|ZP_04593909.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella abortus str.
           2308 A]
 gi|254688736|ref|ZP_05151990.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           6 str. 870]
 gi|254696864|ref|ZP_05158692.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           2 str. 86/8/59]
 gi|254729769|ref|ZP_05188347.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           4 str. 292]
 gi|256256983|ref|ZP_05462519.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           9 str. C68]
 gi|260545825|ref|ZP_05821566.1| SAM binding domain-containing protein [Brucella abortus NCTC 8038]
 gi|260754215|ref|ZP_05866563.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 6 str.
           870]
 gi|260757435|ref|ZP_05869783.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 4 str.
           292]
 gi|260761260|ref|ZP_05873603.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883240|ref|ZP_05894854.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|297247836|ref|ZP_06931554.1| TrmA family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|62195555|gb|AAX73855.1| RNA methyltransferase hypothetical, TrmA family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615451|emb|CAJ10420.1| SAM (and some other nucleotide) binding motif [Brucella melitensis
           biovar Abortus 2308]
 gi|189019246|gb|ACD71968.1| SAM (and some other nucleotide) binding motif [Brucella abortus
           S19]
 gi|237789748|gb|EEP63958.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella abortus str.
           2308 A]
 gi|260097232|gb|EEW81107.1| SAM binding domain-containing protein [Brucella abortus NCTC 8038]
 gi|260667753|gb|EEX54693.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 4 str.
           292]
 gi|260671692|gb|EEX58513.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674323|gb|EEX61144.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 6 str.
           870]
 gi|260872768|gb|EEX79837.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|297175005|gb|EFH34352.1| TrmA family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 415

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|23501339|ref|NP_697466.1| RNA methyltransferase [Brucella suis 1330]
 gi|161618410|ref|YP_001592297.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           canis ATCC 23365]
 gi|225626946|ref|ZP_03784985.1| tRNA (Uracil-5-)-methyltransferase [Brucella ceti str. Cudo]
 gi|254701243|ref|ZP_05163071.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella suis
           bv. 5 str. 513]
 gi|254703790|ref|ZP_05165618.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella suis
           bv. 3 str. 686]
 gi|254709586|ref|ZP_05171397.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           pinnipedialis B2/94]
 gi|254712998|ref|ZP_05174809.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti
           M644/93/1]
 gi|254716648|ref|ZP_05178459.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti
           M13/05/1]
 gi|256031078|ref|ZP_05444692.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           pinnipedialis M292/94/1]
 gi|256060572|ref|ZP_05450740.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           neotomae 5K33]
 gi|256159142|ref|ZP_05456963.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti
           M490/95/1]
 gi|256254481|ref|ZP_05460017.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti
           B1/94]
 gi|256368893|ref|YP_003106399.1| RNA methyltransferase putative, TrmA family [Brucella microti CCM
           4915]
 gi|260168209|ref|ZP_05755020.1| RNA methyltransferase putative, TrmA family protein [Brucella sp.
           F5/99]
 gi|260566957|ref|ZP_05837427.1| SAM binding domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261218449|ref|ZP_05932730.1| hypothetical protein BAJG_01894 [Brucella ceti M13/05/1]
 gi|261221654|ref|ZP_05935935.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|261317114|ref|ZP_05956311.1| hypothetical protein BAHG_00763 [Brucella pinnipedialis B2/94]
 gi|261320701|ref|ZP_05959898.1| hypothetical protein BAIG_01275 [Brucella ceti M644/93/1]
 gi|261324567|ref|ZP_05963764.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261751782|ref|ZP_05995491.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261754437|ref|ZP_05998146.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 3 str. 686]
 gi|261757670|ref|ZP_06001379.1| SAM binding domain-containing protein [Brucella sp. F5/99]
 gi|265988151|ref|ZP_06100708.1| hypothetical protein BALG_00728 [Brucella pinnipedialis M292/94/1]
 gi|265997616|ref|ZP_06110173.1| hypothetical protein BAPG_00737 [Brucella ceti M490/95/1]
 gi|50401590|sp|Q8G290|Y438_BRUSU RecName: Full=Uncharacterized RNA methyltransferase BR0438
 gi|23347230|gb|AAN29381.1| RNA methyltransferase putative, TrmA family [Brucella suis 1330]
 gi|161335221|gb|ABX61526.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           canis ATCC 23365]
 gi|225618603|gb|EEH15646.1| tRNA (Uracil-5-)-methyltransferase [Brucella ceti str. Cudo]
 gi|255999051|gb|ACU47450.1| RNA methyltransferase putative, TrmA family [Brucella microti CCM
           4915]
 gi|260156475|gb|EEW91555.1| SAM binding domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|260920238|gb|EEX86891.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|260923538|gb|EEX90106.1| hypothetical protein BAJG_01894 [Brucella ceti M13/05/1]
 gi|261293391|gb|EEX96887.1| hypothetical protein BAIG_01275 [Brucella ceti M644/93/1]
 gi|261296337|gb|EEX99833.1| hypothetical protein BAHG_00763 [Brucella pinnipedialis B2/94]
 gi|261300547|gb|EEY04044.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261737654|gb|EEY25650.1| SAM binding domain-containing protein [Brucella sp. F5/99]
 gi|261741535|gb|EEY29461.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261744190|gb|EEY32116.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262552084|gb|EEZ08074.1| hypothetical protein BAPG_00737 [Brucella ceti M490/95/1]
 gi|264660348|gb|EEZ30609.1| hypothetical protein BALG_00728 [Brucella pinnipedialis M292/94/1]
          Length = 415

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|254707833|ref|ZP_05169661.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           pinnipedialis M163/99/10]
 gi|261315320|ref|ZP_05954517.1| hypothetical protein BAGG_02480 [Brucella pinnipedialis M163/99/10]
 gi|261304346|gb|EEY07843.1| hypothetical protein BAGG_02480 [Brucella pinnipedialis M163/99/10]
          Length = 414

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|218294965|ref|ZP_03495819.1| (Uracil-5)-methyltransferase [Thermus aquaticus Y51MC23]
 gi|218244873|gb|EED11397.1| (Uracil-5)-methyltransferase [Thermus aquaticus Y51MC23]
          Length = 402

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 22/159 (13%)

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +QG    LE+Y G+G  SL+LA  F  V+AVEI+K +V     + A   V NV+  R  +
Sbjct: 258 VQGGERALEVYAGSGLLSLLLAPRFQEVVAVEISKEAVRRGERDKARLRVENVRFHRGDA 317

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCN 324
           +E        R F           RF  + +DPPR+GL +     ++++ P  +LYI+C+
Sbjct: 318 RE-------ARRFG----------RFDLVVLDPPRAGLSEEVRAYLLESRPKEVLYIACD 360

Query: 325 PDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
           P +  RD+  ++   + +     +D FP+T H+E   LL
Sbjct: 361 PATWARDVGELVRGGYELAFARPYDFFPFTHHVEVLSLL 399


>gi|281206857|gb|EFA81041.1| hypothetical protein PPL_05876 [Polysphondylium pallidum PN500]
          Length = 666

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 27/198 (13%)

Query: 185 NSFTQPNA----GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           N+F Q N+     +   + EW     + I   +L++ CG G     ++     V  +E+A
Sbjct: 427 NAFFQVNSKAAESLFSKVTEWAGVNERSI---VLDVCCGTGTIGQCISDKARHVYGLEMA 483

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR--EREFNRLKDIDIHSYRFKTIFVD 298
             +V  AR N   N + N+  +   +++ T  + +   + +   KD +I         VD
Sbjct: 484 PDAVADARVNAERNGIKNIDYIVGKAEDTTDKLLQMIHQNYRDAKDGEIIG------IVD 537

Query: 299 PPRSGLDDATVG---MVQAYPHILYISCNPDSLCRDLSIL--STTHTIE-------RLAL 346
           PPR+GL    +     ++    ++Y+SCN +SL  D + L  S T+T++       +   
Sbjct: 538 PPRAGLHQNVIKSLRTLETMKKLVYVSCNQNSLIVDAARLCKSITNTMKGTPFRPVKAIA 597

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H E  VL  R
Sbjct: 598 VDLFPHTEHCEVVVLFER 615


>gi|209522218|ref|ZP_03270855.1| RNA methyltransferase, TrmA family [Burkholderia sp. H160]
 gi|209497347|gb|EDZ97565.1| RNA methyltransferase, TrmA family [Burkholderia sp. H160]
          Length = 476

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++   +
Sbjct: 298 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISREVVGIEGSEVLTQ 357

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V            F      E   + L+ +      F    VDPPR G  
Sbjct: 358 RALANAELNGV-------AGHTSFASRNLFEVTADDLRALG----HFDKFLVDPPREGAL 406

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SC P +L RD  +L     + +    + + FP+T H
Sbjct: 407 AIAKALAEIAQSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFPHTSH 466

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 467 VESIALFER 475


>gi|330994042|ref|ZP_08317972.1| Putative RNA methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329758988|gb|EGG75502.1| Putative RNA methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 411

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 21/178 (11%)

Query: 184 ENSFTQPNAGINVHMLEWVLAAT--KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             +F QP       + + VLA    KG++  ++ELY G G  S  LA    +V A E  +
Sbjct: 237 PGAFLQPAREGEEAIRQAVLAGLPRKGLKAGIIELYAGCGTLSFALATQA-KVHAYEGDR 295

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P+    +                 +   T+ +   R+ NR   +     +   + +DPP 
Sbjct: 296 PAFACLK----------------QASGGTRVLPALRDLNRQPVMATELAKSAAVVLDPPH 339

Query: 302 SGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +G       +V   P  ++Y+SCNP +L RDL+ L    + ++ L + DQF ++  +E
Sbjct: 340 AGAGAQVAQIVTGRPRCVIYVSCNPAALQRDLTPLRQAGYRLDSLTVIDQFLWSAEVE 397


>gi|162148821|ref|YP_001603282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545431|ref|YP_002277660.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787398|emb|CAP56993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533108|gb|ACI53045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 426

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 117/283 (41%), Gaps = 30/283 (10%)

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHR---LLDDAWRECAIRLRDALHARKYQIQLI 152
           L P LRA +  +  L    D  I  L       L  D   E A R + A  AR ++I  I
Sbjct: 157 LLPALRAVMQSLGALRRDGDALINMLDSGPDLLLATDGPLEAADRAKLASFARDHRIPRI 216

Query: 153 G--RANKTKIC-LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT--K 207
              RA  T +          R  ++G  +       +F QP       ++  VLA    +
Sbjct: 217 AWRRAGTTDVPETAAQTASVRHELSG--VATMPPPGAFLQPTREGEAAIIAAVLAGLPRR 274

Query: 208 GIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            ++ D ++ELY G G  S  L +H  R LA E                  + V  +R ++
Sbjct: 275 LVRKDTVIELYAGCGTLSFALGQHV-RTLAFE---------------GQPDAVATLRRAT 318

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNP 325
              T+ +  +R+ NR   +       + + +DPP +G       +V   P  I+Y+SCNP
Sbjct: 319 TG-TRVVAEQRDLNRQPVMARQIADARAVVLDPPYTGAGAQMAEIVAGRPERIVYVSCNP 377

Query: 326 DSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +L RD + L +  + ++ + + DQF ++  +E   +    P+
Sbjct: 378 QALGRDAAGLQAAGYRLDGVTIIDQFLWSTEVEAVCVFTAPPA 420


>gi|160900061|ref|YP_001565643.1| 23S rRNA 5-methyluridine methyltransferase [Delftia acidovorans
           SPH-1]
 gi|160365645|gb|ABX37258.1| RNA methyltransferase, TrmA family [Delftia acidovorans SPH-1]
          Length = 490

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 33/216 (15%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD 232
           G T+ ++  +  FTQ N  IN  ++   L     ++ D  +++ +CG GNF+L LA    
Sbjct: 279 GITMPFKPTD--FTQVNPHINRVLVTRALRLLD-VKKDERVIDWFCGLGNFTLPLATQAR 335

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            VL +E +   V+ +  N AAN+    +  +++   F         F    ++       
Sbjct: 336 EVLGIEGSDTLVKRSHENYAANNAQRAEGDKLAPTRFVA----RNLFEMTPEMLFADGVA 391

Query: 293 KTIFVDPPRSG----------LDDATVGMVQAYP------------HILYISCNPDSLCR 330
               VDPPR G          +  A +G   A P             I+Y+SCNP +L R
Sbjct: 392 GKWLVDPPREGAFALSKALADIHQARIGAEGAEPLPAGHEAWRFPERIVYVSCNPATLAR 451

Query: 331 DLSILS--TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  +L     +      + + FP+T H+E   +  R
Sbjct: 452 DAGLLVHLAGYRCVSAGVVNMFPHTAHVESMAVFER 487


>gi|148828135|ref|YP_001292888.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           PittGG]
 gi|167012642|sp|A5UI99|RUMB_HAEIG RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|148719377|gb|ABR00505.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittGG]
          Length = 392

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270
           +L +L+CG G F L  A+         I    +E +   I AA+H  + KI+ +    F 
Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 299

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSL 328
                    N+ ++      +   + V+PPR G+  + +  + Q  PH ILY SCN  ++
Sbjct: 300 SLDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTM 353

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 354 GKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389


>gi|126738472|ref|ZP_01754177.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           SK209-2-6]
 gi|126720271|gb|EBA16977.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           SK209-2-6]
          Length = 415

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 20/179 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SF Q        +L  V   T G +  +L+L+ G G F+L LA   + V A+E      
Sbjct: 242 GSFLQATTDGEAALLGAVREITTGAK-RILDLFAGCGTFTLPLAERAE-VYALEGE---- 295

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR----LKDIDIHSYRFKTIFVDPP 300
                   A  +  ++      KE  Q     R+  R     +D+      ++ + +DPP
Sbjct: 296 --------AEMIAALEAGWRRGKELRQVKAETRDLFRNPLLPEDMKPFGAHYEAVVIDPP 347

Query: 301 RSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           R+G +     + +A  P + Y+SCNP S  RD  +L    +++  + + DQF ++ H E
Sbjct: 348 RAGAEAQVAQLAKARLPVVAYVSCNPISFARDAKVLVGAGYSLNWVQVVDQFRWSAHTE 406


>gi|17987779|ref|NP_540413.1| tRNA (uracil-5-) -methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|256044155|ref|ZP_05447062.1| tRNA (uracil-5-) -methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260563512|ref|ZP_05833998.1| SAM binding domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|265990567|ref|ZP_06103124.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|50401634|sp|Q8YFM4|Y1496_BRUME RecName: Full=Uncharacterized RNA methyltransferase BMEI1496
 gi|17983503|gb|AAL52677.1| tRNA (uracil-5-) -methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|260153528|gb|EEW88620.1| SAM binding domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|263001351|gb|EEZ13926.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 415

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMTKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|296134904|ref|YP_003642146.1| RNA methyltransferase, TrmA family [Thiomonas intermedia K12]
 gi|295795026|gb|ADG29816.1| RNA methyltransferase, TrmA family [Thiomonas intermedia K12]
          Length = 474

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 63/292 (21%)

Query: 112 SQSDQAIVTLIYH-RLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRDYVD 168
           +  D+  V ++ H   L DA R+   RLRD    H  ++ +Q  G  +   +  D + + 
Sbjct: 192 AMGDRVTVLVLRHLEPLTDADRQ---RLRDFGQQHGVQWWLQPKGPDSVAPLDPDAEPLS 248

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
             L   G  + +R  +  FTQ N  IN  M+   L      + D +++ +CG GNF+L +
Sbjct: 249 YALPEFGIVMPFRPTD--FTQVNPQINRVMVARALRLLGARRTDRVIDWFCGLGNFTLPI 306

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    +VL VE +   V  A  N   N + + K+V      FT      R    +   D+
Sbjct: 307 ATQARQVLGVEGSATLVARALDNALHNDLQD-KVV------FTA-----RNLFEMDADDL 354

Query: 288 HSYRFKTIF-VDPPRSG-------LDDATVGMVQAYPH---------------------- 317
            +Y    ++ VDPPR G       L +A  G + A                         
Sbjct: 355 RAYGEADLWLVDPPRDGALALCKALAEAVNGPLGAPGEEETRAAGEASAAPKPVAPPVVP 414

Query: 318 ----------ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
                     I+Y+SCNP +L RD  +L     +T+    + + FP+T H+E
Sbjct: 415 AVAPFKPPRRIVYVSCNPATLARDAGLLVHQAGYTLRAAGVMNMFPHTAHVE 466


>gi|254693219|ref|ZP_05155047.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           abortus bv. 3 str. Tulya]
 gi|261213462|ref|ZP_05927743.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915069|gb|EEX81930.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 3 str.
           Tulya]
          Length = 415

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|16272896|ref|NP_439119.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae Rd
           KW20]
 gi|260580048|ref|ZP_05847878.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae
           RdAW]
 gi|1175340|sp|P44083|RUMB_HAEIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|1573984|gb|AAC22619.1| RNA methyltransferase, putative [Haemophilus influenzae Rd KW20]
 gi|260093332|gb|EEW77265.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae
           RdAW]
          Length = 392

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270
           +L +L+CG G F L  A+         I    +E +   I AA+H  + KI+ +    F 
Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 299

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSL 328
                    N+ ++      +   + V+PPR G+  + +  + Q  PH ILY SCN  ++
Sbjct: 300 SLDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTM 353

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 354 GKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389


>gi|170692346|ref|ZP_02883509.1| RNA methyltransferase, TrmA family [Burkholderia graminis C4D1M]
 gi|170142776|gb|EDT10941.1| RNA methyltransferase, TrmA family [Burkholderia graminis C4D1M]
          Length = 475

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 297 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARIAREVVGIEGSDVLTS 356

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V        +   F      E   + ++ +      F    VDPPR G  
Sbjct: 357 RALANAELNGV-------AAHTSFACRNLFEVTADDMRALG----HFDKFLVDPPREGAL 405

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + +    + + FP+T H
Sbjct: 406 AVAKALAEIAQSGDGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLVGAGVVNMFPHTSH 465

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 466 VESIALFER 474


>gi|294338841|emb|CAZ87175.1| putative 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Thiomonas sp. 3As]
          Length = 470

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 120/288 (41%), Gaps = 59/288 (20%)

Query: 112 SQSDQAIVTLIYH-RLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRDYVD 168
           +  D+  V ++ H   L DA R+   RLRD    H  ++ +Q  G  +   +  D + + 
Sbjct: 192 AMGDRVTVLVLRHLEPLTDADRQ---RLRDFGQQHGVQWWLQPKGPDSVAPLDPDAEPLS 248

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
             L   G  + +R  +  FTQ N  IN  M+   L      + D +++ +CG GNF+L +
Sbjct: 249 YALPEFGIVMPFRPTD--FTQVNPQINRVMVARALRLLGARRTDRVIDWFCGLGNFTLPI 306

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    +VL VE +   V  A  N   N + + K+V      FT      R    +   D+
Sbjct: 307 ATQARQVLGVEGSATLVARALDNALHNDLQD-KVV------FTA-----RNLFEMDADDL 354

Query: 288 HSYRFKTIF-VDPPRSG-------LDDATVGMV--------------------------- 312
            +Y    ++ VDPPR G       L +A  G +                           
Sbjct: 355 RAYGEADLWLVDPPRDGALALCKALAEAVNGPLGTPGEEETRAAGEASAAPKPVAPPVAP 414

Query: 313 -QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
            +    I+Y+SCNP +L RD  +L     +T+    + + FP+T H+E
Sbjct: 415 FKPPRRIVYVSCNPATLARDAGLLVHQAGYTLRAAGVMNMFPHTAHVE 462


>gi|254718616|ref|ZP_05180427.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella sp.
           83/13]
 gi|265983593|ref|ZP_06096328.1| hypothetical protein BAKG_01706 [Brucella sp. 83/13]
 gi|306839866|ref|ZP_07472664.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella sp.
           NF 2653]
 gi|264662185|gb|EEZ32446.1| hypothetical protein BAKG_01706 [Brucella sp. 83/13]
 gi|306405052|gb|EFM61333.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella sp.
           NF 2653]
          Length = 415

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELARSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|150866809|ref|XP_001386532.2| RNA methyltransferase tRNA(m5U54)methyltransferase [Scheffersomyces
           stipitis CBS 6054]
 gi|149388065|gb|ABN68503.2| RNA methyltransferase tRNA(m5U54)methyltransferase [Scheffersomyces
           stipitis CBS 6054]
          Length = 542

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 30/252 (11%)

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L+   R+  I LRD L   K           T+ C       + +T      +++   +S
Sbjct: 301 LEAQGRQRTILLRDGLRMNKET------GEHTRACYGES--SKVMTEKVEDFVFQFDPSS 352

Query: 187 FTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIA 240
           F Q N  I + +LE++   +         L++ YCG G F + L++      +V  +E++
Sbjct: 353 FFQNNNSILIPVLEYIKYHIGLGAKSYKYLVDTYCGVGFFGISLSKSIPKEGKVFGIELS 412

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDP 299
           + S+  A +N   N +   K ++  S       + E   N  +K  +        + +DP
Sbjct: 413 ERSINFATHNAMLNGLEVPKRMQFISGSADSMFKNEEFLNSGIKGKE------SIVIMDP 466

Query: 300 PRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL-------STTHTIERLALFDQF 350
            R G  ++ +  +++  P  I+Y+SCN  +  RDLS+        S ++ +  +  FD F
Sbjct: 467 SRKGSTESFMRQLLEFKPKLIIYVSCNVFTQARDLSLFNKLQEEGSISYRVRDVVGFDFF 526

Query: 351 PYTRHMECGVLL 362
           P T+H+E   +L
Sbjct: 527 PQTKHVETVAVL 538


>gi|153824095|ref|ZP_01976762.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Vibrio cholerae B33]
 gi|126518382|gb|EAZ75605.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Vibrio cholerae B33]
          Length = 87

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 4/78 (5%)

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIERLALF 347
           +F  + +DP R+G +   V  + A     ++Y+SCNP +L RD  S+LS    +E+L + 
Sbjct: 10  KFAKVLLDPARAGAE-GIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGML 68

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP+T H+E   L V+K
Sbjct: 69  DMFPHTSHLESMALFVKK 86


>gi|255326562|ref|ZP_05367641.1| tram domain protein [Rothia mucilaginosa ATCC 25296]
 gi|255296374|gb|EET75712.1| tram domain protein [Rothia mucilaginosa ATCC 25296]
          Length = 545

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 22/211 (10%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           V E +T   R   Y+     F Q +      M+  +L   +  +G+  L+LY G G F+ 
Sbjct: 327 VTEEVTFGSRRFSYQVSAGGFWQIHRAAPSTMVGTMLTMLRPQEGECTLDLYAGAGLFTA 386

Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAA-------NHVNN-VKIVRMSSKEFTQAMR 274
            LA        V+++E +  + + AR N A        N  N  ++++R         ++
Sbjct: 387 ALADAVGATGTVVSIEGSPVTHKDARSNFAPDGCSRTENSANTRIEVIRGDVARHLVDLK 446

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332
              EF  +  ID        + +DP R G +  T+  + A     ILY++C+P SL RD 
Sbjct: 447 TALEFGEIPAID-------AVVLDPSREGANRTTLERLDALDPKRILYVACDPASLGRDT 499

Query: 333 SILSTTH-TIERLALFDQFPYTRHMECGVLL 362
            IL      + +L  FD +P T H+E   L 
Sbjct: 500 GILRELGWDMVQLRAFDMYPNTHHVESVALF 530


>gi|148559248|ref|YP_001258458.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|148370505|gb|ABQ60484.1| RNA methyltransferase putative, TrmA family [Brucella ovis ATCC
           25840]
          Length = 415

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|91687422|gb|ABE30622.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 434

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 30/193 (15%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 256 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISKEVMGIEGSEVLTS 315

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR----FKTIFVDPPR 301
            A  N   N V               A     E   L ++     R    F    +DPPR
Sbjct: 316 RALANAGLNGV---------------AGHTSFECRNLFEVTADDLRALGHFDKFLIDPPR 360

Query: 302 SG--------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
            G         + A  G       I+Y+SC P +L RD  +L     + +    + + FP
Sbjct: 361 EGALAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFP 420

Query: 352 YTRHMECGVLLVR 364
           +T H+E   L  R
Sbjct: 421 HTSHVESIALFER 433


>gi|78223178|ref|YP_384925.1| 23S rRNA methyltransferase/RumA [Geobacter metallireducens GS-15]
 gi|78194433|gb|ABB32200.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter metallireducens
           GS-15]
          Length = 493

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 22/185 (11%)

Query: 186 SFTQPNAG----INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           SF Q N+G    I   + EW  +A  G +  +++LYCG G  SL LA     V  +E   
Sbjct: 294 SFFQVNSGSARIIYEKVREW--SALTGNE-KVVDLYCGIGGISLFLAPGAQEVHGIEYVD 350

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A  N   N + N      S +    A   E       + D+       +  +PPR
Sbjct: 351 AAVADAERNARLNGIRNC-----SFEAGDAAELLEELVEEGTEPDV-------VIFNPPR 398

Query: 302 SGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            G D   +   V + P  ++Y+SC+P +L RDL IL+   +    +   D FP T H+E 
Sbjct: 399 KGCDRRVLEAAVNSGPGRMIYVSCSPATLARDLDILAGLGYQTREIQPVDMFPQTPHIEN 458

Query: 359 GVLLV 363
             LLV
Sbjct: 459 VALLV 463


>gi|308176099|ref|YP_003915505.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter
           arilaitensis Re117]
 gi|307743562|emb|CBT74534.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter
           arilaitensis Re117]
          Length = 376

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 67/154 (43%), Gaps = 20/154 (12%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G F+L  A     V  +E +  +VEAA  +  A  ++++      + EF     
Sbjct: 238 DLYSGVGGFALHCAAEDRTVYGIETSTEAVEAAETSAKAMELDDIHFKAQDATEFALGA- 296

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGL--DDATVGMVQAYPHILYISCNPDSLCRDL 332
                          +  + + V+PPR G+  D +T         I+Y SCN  SL RDL
Sbjct: 297 --------------GWAPEAVIVNPPRRGITADLSTWLNGSDVQQIIYSSCNAKSLARDL 342

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
             L   T T+ R  + D FP T H E  V L RK
Sbjct: 343 ERLENYTPTLAR--VMDMFPQTNHYEVIVKLERK 374


>gi|256112958|ref|ZP_05453866.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994397|ref|ZP_06106954.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|262765510|gb|EEZ11299.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
          Length = 415

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMTKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|225851974|ref|YP_002732207.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis ATCC 23457]
 gi|256264518|ref|ZP_05467050.1| SAM binding domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|225640339|gb|ACO00253.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis ATCC 23457]
 gi|263094851|gb|EEZ18589.1| SAM binding domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|326408470|gb|ADZ65535.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis M28]
 gi|326538187|gb|ADZ86402.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis M5-90]
          Length = 415

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARRVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMTKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|206890432|ref|YP_002249201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742370|gb|ACI21427.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 389

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 20/181 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF Q N      +++ VL         +++ Y G G F++ LA+  ++V+A+E ++ + +
Sbjct: 224 SFFQVNTYQAEKLIQTVLNYITQEDKTVIDAYAGVGTFTVFLAQKAEKVIAIEESRSAYK 283

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A+ NI     N   I  +  K  T+    E + N              I +DPPR G  
Sbjct: 284 DAQINIK----NFDNITYLCKK--TEEALFESKING-----------DAIVIDPPRVGCM 326

Query: 306 DATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
              +  +  +    ++Y+SC P +L RDL  L    + ++ +   D FP T H+E   L+
Sbjct: 327 KEVLQAIAEKKIKKVIYVSCEPSTLARDLKYLKEMGYKLKEIQPVDMFPQTYHIENVALM 386

Query: 363 V 363
           +
Sbjct: 387 I 387


>gi|68249546|ref|YP_248658.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|81336027|sp|Q4QLU9|RUMB_HAEI8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|68057745|gb|AAX87998.1| hypothetical RNA methyltransferase [Haemophilus influenzae
           86-028NP]
          Length = 392

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFT 270
           +L +L+CG G F L  A+         I    +E +   I AA+H  + KI+ +    F 
Sbjct: 242 NLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASH--SAKILGLEHVNFQ 299

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSL 328
                    N+ ++      +   + V+PPR G+  + +  + Q  PH ILY SCN  ++
Sbjct: 300 SLDAASVIENKNEN------KPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTM 353

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +DL  L T +   ++ LFD FP T H E  VLL RK
Sbjct: 354 GKDLQHL-TCYKPLKIQLFDMFPQTSHYEVLVLLERK 389


>gi|206560252|ref|YP_002231016.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           cenocepacia J2315]
 gi|198036293|emb|CAR52189.1| putative 23S rRNA (uracil-5-)-methyltransferase [Burkholderia
           cenocepacia J2315]
          Length = 465

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   D+ +   F    +DPPR G 
Sbjct: 347 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 394

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 395 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 455 HVESIALFER 464


>gi|326387662|ref|ZP_08209268.1| (Uracil-5)-methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207708|gb|EGD58519.1| (Uracil-5)-methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 404

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 21/160 (13%)

Query: 211 GDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G + +L+ G G F+  LA       +VLAVE A+ +           H+      RM+ +
Sbjct: 259 GVVADLFSGLGTFAFGLAGSAGAAPKVLAVEAARDT-----------HLACQSAARMNGR 307

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNP 325
               A+ R+   N L+  ++   RF  + +DPPR+G  +  VG + A     ++Y+SCNP
Sbjct: 308 S-VHALHRDLFRNPLRTEELD--RFGGVVLDPPRAGARE-QVGQIAASKVARVVYVSCNP 363

Query: 326 DSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            S  RD + ++   + +  L    QF ++ H+E   L VR
Sbjct: 364 ASWARDAAQLIEGGYRLAALRAVGQFRWSTHVELASLFVR 403


>gi|88704246|ref|ZP_01101960.1| tRNA (uracil-5-)-methyltransferase/TrmA [Congregibacter litoralis
           KT71]
 gi|88701297|gb|EAQ98402.1| tRNA (uracil-5-)-methyltransferase/TrmA [Congregibacter litoralis
           KT71]
          Length = 393

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 27/206 (13%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT--KGIQGDLLELYCGNGNFS 224
           +D+ +T +  T+  R+    F Q N+  N  M  W+ A     G    +LEL+ G+GNF+
Sbjct: 207 IDDHITASEVTVNQRR---PFRQGNSAQNQSMRAWLKARVLEAGPPDHVLELFAGSGNFT 263

Query: 225 LVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            VL       ++AV+   P++E          +    +  ++S  F   + R     +L+
Sbjct: 264 EVLEEAGCKHIVAVDSFLPAIE---------RLKERDLTGVTS--FGCNLDRGDSAAKLQ 312

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH---ILYISCNPDSLCRDLSI-LSTT 338
           +  + +     + +DPPR GL +  +G  ++A P    I+YISC+P +L RDL + +   
Sbjct: 313 EPLVIA---SLLLLDPPRDGLKN--IGDYLKAAPALRTIIYISCDPATLARDLKVAVEQG 367

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
             ++ +   D FP T H+E   +L R
Sbjct: 368 FELQEVQPLDLFPQTPHVETLTVLRR 393


>gi|298253358|ref|ZP_06977150.1| SAM-dependent methyltransferase [Gardnerella vaginalis 5-1]
 gi|297532753|gb|EFH71639.1| SAM-dependent methyltransferase [Gardnerella vaginalis 5-1]
          Length = 443

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 38/230 (16%)

Query: 170 RLTVAG-----RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYC 218
           R+  AG     RT  Y      F Q +     H++ +VL   +   G       L +LY 
Sbjct: 215 RVAAAGDSSRARTFDYDVDARGFWQIHRAAPEHLVSYVLGLVRSALGGRTKNTVLWDLYS 274

Query: 219 GNGNFSLVLARHFD------------------RVLAVEIAKPSVEAARYNIAANHVNNVK 260
           G+G F++ LA   +                  RVL++E A  +V+ AR NI    ++   
Sbjct: 275 GSGLFTIPLATLANVGGALSSFAGDSGSAEPARVLSIEGAPIAVKNARRNIGRAGLSR-D 333

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK---TIFVDPPRSGLDDATVGMV--QAY 315
           IV     +  Q +  +  F   K   I   RF     + +DPPR+G        +     
Sbjct: 334 IVEALEGDVAQTLESQ-VFKASKSSKI-VRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGA 391

Query: 316 PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             ++Y++C+P SL RD+       ++++ L  FD +P T H+E  VL+ +
Sbjct: 392 RAVVYVACDPTSLARDVGTFRELGYSVQSLRAFDIYPNTHHVETVVLMSK 441


>gi|115351806|ref|YP_773645.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|115281794|gb|ABI87311.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia ambifaria AMMD]
          Length = 484

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 306 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 365

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   D+ +   F    +DPPR G 
Sbjct: 366 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 413

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 414 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 473

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 474 HVESIALFER 483


>gi|83942054|ref|ZP_00954516.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp.
           EE-36]
 gi|83847874|gb|EAP85749.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp.
           EE-36]
          Length = 412

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 23/151 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH----VNNVKIVRMSSKE 268
           +++L+ G G FSL LA   + V AVE        A    A +H       +K V   +++
Sbjct: 264 VIDLFAGCGTFSLPLADQAE-VHAVE------GDAAMTAALDHGWRMSTGLKPVTTEARD 316

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDS 327
                RR    + L   D        + +DPPR+G +     +V+A P +L Y+SCNP +
Sbjct: 317 L---FRRPLLPDELAKTD-------AVVIDPPRAGAEAQIAEIVKAMPPVLAYVSCNPVT 366

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHME 357
             RD ++L +  +T+  + + DQF ++ H+E
Sbjct: 367 FARDAAVLIAAGYTLNWVQVVDQFRWSSHVE 397


>gi|143580709|sp|Q0BEW2|RUMA_BURCM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 465

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 287 FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTT 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N V+            T A R   E   +   D+ +   F    +DPPR G 
Sbjct: 347 RALANARENGVDG---------HTTFACRNLFE---VTGDDLRALGAFDKFLIDPPREGA 394

Query: 304 -------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
                   + A  G       I+Y+SCNP +L RD  +L     + ++   + + FP T 
Sbjct: 395 LAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTS 454

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 455 HVESIALFER 464


>gi|312868954|ref|ZP_07729134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
           PB013-T2-3]
 gi|311095518|gb|EFQ53782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
           PB013-T2-3]
          Length = 497

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 15/180 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N      + E V  A +    D L++ Y G G   L LA     V  +E+   +V
Sbjct: 326 SFLQLNPEQTEALYEQVAEALELAPEDTLIDAYAGIGTIGLSLASRVKAVRGMEVIPEAV 385

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A  N   N + N +          +  + E    R  D      +F  + VDPPR+GL
Sbjct: 386 ADANANAKLNGITNTQY---------EVGKAEELMPRWLD---EGLQFDALVVDPPRTGL 433

Query: 305 DDATVGMV-QAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DD  +  + +  P    Y+SC   SL R+L  L++ + ++ +   D  P T   E  V L
Sbjct: 434 DDELIKQILRVKPRKFAYVSCGMASLARNLRRLTSVYHVDYIQPIDMMPQTARCEAVVKL 493


>gi|311742639|ref|ZP_07716448.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314267|gb|EFQ84175.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 401

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 36/259 (13%)

Query: 116 QAIVTLIYHRLL-DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           +AIV+   HRLL  DA  E A+            +   G A  T++    ++   R+T +
Sbjct: 169 EAIVSSAGHRLLVTDATVEDALEAATDGVVAVDGVVRAGSAALTEVVEHHEF---RVTGS 225

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233
           G           F Q +      +++ V+A      GD++ +LY G G F+  LA     
Sbjct: 226 G-----------FWQVHPAAAGTLVDAVMAGAAVRPGDVVADLYAGVGLFTAFLADAVGP 274

Query: 234 ---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V +VE    +   AR N+     ++V  VR+ +    +A+R            +   
Sbjct: 275 DGLVHSVEADPVAARDARRNL-----HDVAQVRLHAATTERALRD----------GLVGD 319

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFD 348
           R   + +DPPR+G       +    P  +++++C+P +L RDL+   +  + +  L  F 
Sbjct: 320 RADVVVLDPPRAGAKRVVEAVAALGPRTVVHVACDPAALARDLAGFAAAGYRLADLRGFA 379

Query: 349 QFPYTRHMECGVLLVRKPS 367
            FP T H+EC  LL++  S
Sbjct: 380 LFPMTHHVECVALLIKTGS 398


>gi|294851816|ref|ZP_06792489.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|294820405|gb|EFG37404.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 415

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     M   VLA   G    + +L+CG G F+L +A     V AVE    ++
Sbjct: 245 GCFLQATAEAEETMAALVLAHL-GKARCVADLFCGVGTFALRIAEK-SAVHAVENDAAAL 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A    +   HV  +K V +  ++  +     +E             +  +  DPPR+G 
Sbjct: 303 AALDRGV--RHVQGLKPVSIERRDLFRRPLMPKEL----------LPYNAVVFDPPRAGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           ++  + + ++    ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L
Sbjct: 351 EEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVL 410

Query: 363 VR 364
            +
Sbjct: 411 TK 412


>gi|121594754|ref|YP_986650.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax sp. JS42]
 gi|143580440|sp|A1W8J9|RUMA_ACISJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120606834|gb|ABM42574.1| 23S rRNA m(5)U-1939 methyltransferase [Acidovorax sp. JS42]
          Length = 482

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     
Sbjct: 273 GITMPFKPTD--FTQVNPHINRVLVTRALRLLDARKDERVIDWFCGLGNFTLPIATQARE 330

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL +E ++  V  +R N  +N         +++  F         F    ++ I      
Sbjct: 331 VLGIEGSEALVARSRENYQSNQAQRQDGSALAATSFVA----RNLFEMTPEMLIADGASD 386

Query: 294 TIFVDPPRSG----------LDDATVGMVQAYP------------HILYISCNPDSLCRD 331
              VDPPR G          +  A +G   A P             I+Y+SCNP +L RD
Sbjct: 387 KWLVDPPREGAFALSKALADIHQARIGAEDAPPLPAGHEGWQPPRRIVYVSCNPATLARD 446

Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +L     +      + + FP+T H+E   +  R
Sbjct: 447 AGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 481


>gi|83953103|ref|ZP_00961825.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp.
           NAS-14.1]
 gi|83842071|gb|EAP81239.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp.
           NAS-14.1]
          Length = 412

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 23/151 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH----VNNVKIVRMSSKE 268
           +++L+ G G FSL LA   + V AVE        A    A +H       +K V   +++
Sbjct: 264 VIDLFAGCGTFSLPLADQAE-VHAVE------GDAAMTAALDHGWRMSTGLKPVTTEARD 316

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDS 327
                RR    + L   D        + +DPPR+G +     +V+A P +L Y+SCNP +
Sbjct: 317 L---FRRPLLPDELAKTD-------AVVIDPPRAGAEAQIAEIVKAMPPVLAYVSCNPVT 366

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHME 357
             RD ++L +  +T+  + + DQF ++ H+E
Sbjct: 367 FARDAAVLIAAGYTLNWVQVVDQFRWSSHVE 397


>gi|320529040|ref|ZP_08030132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas artemidis
           F0399]
 gi|320138670|gb|EFW30560.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas artemidis
           F0399]
          Length = 457

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 21/152 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ YCG G  +L LA+    V  +EI +P++  AR N   N + N + +   +     +
Sbjct: 312 VIDAYCGTGTITLFLAQRARNVYGIEIVRPAILDARKNARDNGIKNAEFIVGDATAVMPS 371

Query: 273 MRRE-----REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327
           + R+                     K      PR                I+Y+SCNP +
Sbjct: 372 LYRQGVRPDVVVVDPPRAGCTPTVLKNFANMKPR---------------RIVYVSCNPAT 416

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMEC 358
           L RDL+I+    +    +   D FP T H+EC
Sbjct: 417 LARDLAIMKDLGYEAREIQPVDLFPQTSHVEC 448


>gi|15964631|ref|NP_384984.1| putative RNA methyltransferase protein [Sinorhizobium meliloti
           1021]
 gi|307304208|ref|ZP_07583960.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti BL225C]
 gi|307320513|ref|ZP_07599928.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti AK83]
 gi|50401643|sp|Q92RJ3|Y878_RHIME RecName: Full=Uncharacterized RNA methyltransferase R00878
 gi|15073809|emb|CAC45450.1| Putative RNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306893789|gb|EFN24560.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti AK83]
 gi|306902676|gb|EFN33269.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti BL225C]
          Length = 415

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +FTQ        M + VLA   G    + +L+ G G F+L +AR   RV AVE    +V
Sbjct: 248 GAFTQATRPAEDAMAKLVLAHV-GKAKRVADLFAGIGTFALRIARTA-RVHAVEGDDRAV 305

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +A   + AA +   +K V    ++     RR      LK        F  +  DPPR+G 
Sbjct: 306 KA--LDFAARNTQGLKPVTAEKRDL---FRRPMMAQELK-------AFDAVVFDPPRAGA 353

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357
           +     + ++    I  +SCNP +L RDLSIL+   + I  +   DQF ++ H+E
Sbjct: 354 ETQCHELARSGVKKIAAVSCNPVTLARDLSILTAAGYRITGVTPIDQFLWSAHVE 408


>gi|332296500|ref|YP_004438423.1| (Uracil-5)-methyltransferase [Thermodesulfobium narugense DSM
           14796]
 gi|332179603|gb|AEE15292.1| (Uracil-5)-methyltransferase [Thermodesulfobium narugense DSM
           14796]
          Length = 413

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++LY G G+  L L    D+V+ +E  + S   +  NI A    NV  +  +S+  ++ 
Sbjct: 275 IVDLYSGVGSIGLSLRDLADKVVLIESFRNSNLYSIKNIKALGAKNVVPILSNSETISKD 334

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCR 330
           + +E +                + +DPPR G         +      I Y+SCNP +L R
Sbjct: 335 ILQESD---------------VVILDPPRDGAKKILLDKLLKNLPKKICYLSCNPITLGR 379

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DLS L   + ++++  FD FP T H E    L R
Sbjct: 380 DLSFLLKKYDLKKIYGFDFFPNTVHAEVLAFLER 413


>gi|222110633|ref|YP_002552897.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax ebreus TPSY]
 gi|221730077|gb|ACM32897.1| RNA methyltransferase, TrmA family [Acidovorax ebreus TPSY]
          Length = 482

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     
Sbjct: 273 GITMPFKPTD--FTQVNPHINRVLVTRALRLLDARKDERVIDWFCGLGNFTLPIATQARE 330

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL +E ++  V  +R N  +N         +++  F         F    ++ I      
Sbjct: 331 VLGIEGSEALVARSRENYQSNQAQRQDGSALAATSFVA----RNLFEMTPEMLIADGASD 386

Query: 294 TIFVDPPRSG----------LDDATVGMVQAYP------------HILYISCNPDSLCRD 331
              VDPPR G          +  A +G   A P             I+Y+SCNP +L RD
Sbjct: 387 KWLVDPPREGAFALSKALADIHQARIGAEDAPPLPAGHEGWQPPRRIVYVSCNPATLARD 446

Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +L     +      + + FP+T H+E   +  R
Sbjct: 447 AGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 481


>gi|283458269|ref|YP_003362888.1| SAM-dependent methyltransferase [Rothia mucilaginosa DY-18]
 gi|283134303|dbj|BAI65068.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Rothia mucilaginosa
           DY-18]
          Length = 545

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 22/211 (10%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           V E +T   R   Y+     F Q +      M+  +L   +  +G+  L+LY G G F+ 
Sbjct: 327 VTEEVTFGSRRFSYQVSAGGFWQIHRAAPSTMVGTMLTMLRPQEGECTLDLYAGAGLFTA 386

Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN--------VKIVRMSSKEFTQAMR 274
            LA        V+++E +  + + AR N A +  +         ++++R         ++
Sbjct: 387 ALADAVGATGTVVSIEGSPVTHKDARSNFAPDGCSRTENSADTRIEVIRGDVARHLVDLK 446

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332
              EF  +  ID        + +DP R G +  T+  + A     ILY++C+P SL RD 
Sbjct: 447 TALEFGEIPAID-------AVVLDPSREGANRTTLERLDALDPKRILYVACDPASLGRDT 499

Query: 333 SILSTTH-TIERLALFDQFPYTRHMECGVLL 362
            IL      + +L  FD +P T H+E   L 
Sbjct: 500 GILRELGWDMVQLRAFDMYPNTHHVETVALF 530


>gi|116334661|ref|YP_796188.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           brevis ATCC 367]
 gi|116100008|gb|ABJ65157.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           brevis ATCC 367]
          Length = 487

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G   L LA     V  +EI   +V+ A  N AAN + N      ++++    
Sbjct: 344 VVDAYAGIGTIGLSLADVAAEVRGMEIIPEAVDDANANAAANGITNAHYEVGTAEDL--- 400

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                    L    +  +R   I VDPPR+GLD   +  + A     ++Y+SCNP +L +
Sbjct: 401 ---------LPKWVMAGFRPDAIVVDPPRTGLDATLIETILAIRPSKLVYVSCNPSTLAK 451

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L+  + +E +   D  P T   E  V L R+
Sbjct: 452 DLVDLTADYRVEYIQSVDMMPQTARCEAVVKLTRR 486


>gi|329946857|ref|ZP_08294269.1| TRAM domain protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526668|gb|EGF53681.1| TRAM domain protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 462

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 17/158 (10%)

Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +LELY G G F+L LA       +VL++E ++ +V  AR  +  +    +   R+S++  
Sbjct: 315 VLELYSGAGLFTLPLAALVGSGGQVLSLEGSEQAVRDARRTLHEHPGARLAAGRVSARSV 374

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
                  RE          + R   + +DPPR G     +  V A     I+ ++C+P +
Sbjct: 375 -------RELAG----SFSAGRPDVVVLDPPRQGAGREVIEAVAALGAERIVLVACDPAA 423

Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L RDL ++L + + +  ++  D FP+T H E   +L R
Sbjct: 424 LARDLGTLLRSGYGLGAMSALDMFPHTHHFETIAVLDR 461


>gi|162447431|ref|YP_001620563.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985538|gb|ABX81187.1| RNA methyltransferase, TrmA family, putative [Acholeplasma
           laidlawii PG-8A]
          Length = 380

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 23/155 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++ Y G G  +L+ +++  +V  +EI   S + A  N   N + N + + +   E T  
Sbjct: 241 VIDAYSGIGTITLLASKYAKKVYGLEINPASHKDAIDNKRMNQITNAEFI-LGDVEHT-- 297

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-----PHILYISCNPDS 327
                       ++  + +  T+ +DP R G   A++  +Q         I+Y+SCNPD+
Sbjct: 298 ------------LENFTDKVDTLIMDPARDG---ASLKFIQTVLKLKPKKIVYVSCNPDT 342

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
             RD   L   + + ++  FD F YT H+E  VLL
Sbjct: 343 QERDYKQLRNFYNLTKILPFDMFSYTPHVENIVLL 377


>gi|283457325|ref|YP_003361899.1| SAM-dependent methyltransferase [Rothia mucilaginosa DY-18]
 gi|283133314|dbj|BAI64079.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Rothia mucilaginosa
           DY-18]
          Length = 409

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 35/213 (16%)

Query: 168 DERLTVAGRTLIYRQIEN--------SFTQPNAGINVHML----EWVLAATKGIQGDLLE 215
           DE + ++ R  +  Q+ +        SF Q N  +   M     EWV          L +
Sbjct: 215 DEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPR---SLWD 271

Query: 216 LYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           LYCG G F+L  A   D   V  +EI+  +V +A+  +A   +  V      + EF  + 
Sbjct: 272 LYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVDFSAQDAPEFAVS- 330

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
                              + + V+PPR G+ ++    ++      ++Y SCN  +L +D
Sbjct: 331 --------------SGTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKD 376

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L  + +   ++   L D FP+T H E   LL R
Sbjct: 377 LERMPSYAPVQGRVL-DMFPHTDHYEVMTLLKR 408


>gi|163841132|ref|YP_001625537.1| TRAM domain-containing protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162954608|gb|ABY24123.1| tRNA (Uracil-5-) -methyltransferase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 438

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 16/136 (11%)

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL+VE +  + + A+ N A      +   R+     T A    RE +R  D+        
Sbjct: 316 VLSVEGSPVTSKDAKLNFAGRAEVQILPGRVERVLATAA----RESSRKLDV-------- 363

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQF 350
            + +DPPR+G   A VG + A     + Y+SC+P S  RDL         + +L  FD +
Sbjct: 364 -VVLDPPRAGAGKAVVGRITASGAKAVAYVSCDPASFARDLGYFFRAGWELTQLRAFDLY 422

Query: 351 PYTRHMECGVLLVRKP 366
           P+T H+E   LL  KP
Sbjct: 423 PHTHHLETVALLRPKP 438


>gi|239632134|ref|ZP_04675165.1| RNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526599|gb|EEQ65600.1| RNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 455

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 23/215 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK---GIQG 211
             ++++     Y+ E  T+ GRT  ++    +F Q N      +  + LAA     G+  
Sbjct: 258 GKESRLLAGLPYIQE--TLLGRT--FQLSPQAFLQLNPKQTETL--YTLAAKALDLGLHD 311

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L++ YCG G   + LA+    +  ++     +  A+ N  AN + N       +++   
Sbjct: 312 TLIDAYCGIGTVGISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFP 371

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
              +E              +   + VDPPR+GL+ A +  +     P  +YISCNP +L 
Sbjct: 372 KWVQE------------GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLA 419

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL  L+  + ++ +   D FP T   E  V  +R
Sbjct: 420 RDLVSLTKRYKVDWIQSIDMFPQTARCEAVVKFIR 454


>gi|257068619|ref|YP_003154874.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Brachybacterium faecium DSM 4810]
 gi|256559437|gb|ACU85284.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Brachybacterium faecium DSM 4810]
          Length = 440

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 21/162 (12%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR--YNIAANHVNNVKIVRMSSKE 268
           G   +LY G G FS V A      +  E    SVE  R    +AA ++ ++  V  ++ +
Sbjct: 295 GSAWDLYGGVGLFSAVAAEQ----VGPEGTVVSVEGNRRASQLAAENLEDLPQVSTATAD 350

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
            T  +   R       +D       T+ +DPPR+G     +G++       I+Y+SC P 
Sbjct: 351 VTDWVTARR-----GGVD-------TVVLDPPRTGAGVELMGLLATAVRQRIVYVSCEPA 398

Query: 327 SLCRDLSILSTTH-TIERLALFDQFPYTRHMECGVLLVRKPS 367
           +L RDL+ +      +  L  FD FP+T H+E   +L R  S
Sbjct: 399 TLARDLAAIEKKGWRLADLRAFDLFPHTHHIESVAVLERATS 440


>gi|52424450|ref|YP_087587.1| 23S rRNA methyluridine methyltransferase [Mannheimia
           succiniciproducens MBEL55E]
 gi|97273737|sp|Q65VK8|RUMB_MANSM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|52306502|gb|AAU37002.1| TrmA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 389

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 23/161 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           L +L+CG G F L  A+          +  +EIA  ++  A  +     +  V    + +
Sbjct: 244 LWDLFCGVGGFGLHCAKALQEKNPDIELTGIEIAPSAIYCAGLSAQKCGLKKVNFQSLDA 303

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCN 324
             F               ++    +   + V+PPR G+       + Q  P  ILY SCN
Sbjct: 304 ANFA--------------LNQDENKPDLVIVNPPRRGIGKPLAQFLNQMQPQFILYSSCN 349

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             S+ +DL  L T + ++++ LFD FP+T H E   LL+++
Sbjct: 350 AISMTKDLLEL-THYQLQKIQLFDMFPHTSHYEVLTLLIKR 389


>gi|158523083|ref|YP_001530953.1| (Uracil-5)-methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158511909|gb|ABW68876.1| (Uracil-5)-methyltransferase [Desulfococcus oleovorans Hxd3]
          Length = 371

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 21/194 (10%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
           R L+Y     +F QP   +    L+        + GD +++LYCG G       +    V
Sbjct: 193 RGLVYG--PTTFGQPIVELAEASLDRAEHFLNPVSGDQVMDLYCGIGAGLARWKKKTAPV 250

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             VE++  SV  AR N     V    + R+   + T A+  E +  R             
Sbjct: 251 TGVELSGESVACARQNAPGATVLR-GMCRLRLPQLTAAL--EPKAPRC-----------L 296

Query: 295 IFVDPPRSGLDDATVGMV--QAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
           ++ +PPR+G++      +     P  +  +SCN  +L RDL++L +  + IERL  FD F
Sbjct: 297 VYANPPRTGMEPEVTQWLADTCRPEKMACLSCNAVTLKRDLTLLENKGYKIERLIPFDFF 356

Query: 351 PYTRHMECGVLLVR 364
           P TRH+E   LL R
Sbjct: 357 PNTRHLEILALLHR 370


>gi|192289445|ref|YP_001990050.1| (uracil-5)-methyltransferase [Rhodopseudomonas palustris TIE-1]
 gi|192283194|gb|ACE99574.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris TIE-1]
          Length = 413

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 17/183 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q  A +    L  +  A  G    + +L+CG G F L LA    RV A +   P+V
Sbjct: 245 GAFLQATA-LGEQTLAELAMANLGRAKQVADLFCGVGPFVLRLAEKA-RVFACDSDAPAV 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A +   AA   + +K V+  +++     RR      L+D       F  +  DPPR G 
Sbjct: 303 TALQK--AAPATSGLKPVKAEARDL---FRRPLAPPELRD-------FDAVLFDPPRQGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
                 +  +  P ++ +SCN  +  RD  +L    + +ER+   DQF YT H+E  V +
Sbjct: 351 QAQATQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKYTPHVEL-VAV 409

Query: 363 VRK 365
           +RK
Sbjct: 410 LRK 412


>gi|161621317|ref|YP_558674.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia xenovorans
           LB400]
 gi|143580804|sp|Q13Z67|RUMA_BURXL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 472

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 30/193 (15%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++    
Sbjct: 294 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISKEVMGIEGSEVLTS 353

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR----FKTIFVDPPR 301
            A  N   N V               A     E   L ++     R    F    +DPPR
Sbjct: 354 RALANAGLNGV---------------AGHTSFECRNLFEVTADDLRALGHFDKFLIDPPR 398

Query: 302 SG--------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
            G         + A  G       I+Y+SC P +L RD  +L     + +    + + FP
Sbjct: 399 EGALAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFP 458

Query: 352 YTRHMECGVLLVR 364
           +T H+E   L  R
Sbjct: 459 HTSHVESIALFER 471


>gi|312372354|gb|EFR20335.1| hypothetical protein AND_20276 [Anopheles darlingi]
          Length = 735

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L  ARH  +VL V+I   ++E A+YN   N + N K    ++ +F  +
Sbjct: 415 VLDICCGTGTIGLCFARHCKQVLGVDIVPQAIEDAKYNAERNGIENCKFYSGNADDFIMS 474

Query: 273 MRREREFNRLKDIDIHSYRFKTI--FVDPPRSGLDDATV 309
           +        +++ +I   + ++I   VDPPR+GL   TV
Sbjct: 475 L--------IRNANIVQEQKESIIAIVDPPRAGLRSFTV 505


>gi|126730074|ref|ZP_01745886.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sagittula stellata
           E-37]
 gi|126709454|gb|EBA08508.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sagittula stellata
           E-37]
          Length = 409

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q  A     +L  V  A +G    + +L+ G G F+L LA           ++  V
Sbjct: 239 GAFLQATAEGEAALLAGVQEALEGCS-HMADLFAGCGTFALPLA-----------SRGKV 286

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA  + A     + K  R   K         R+  R   +     RF  + +DPPR+G 
Sbjct: 287 HAAEGDAAMARALD-KGWRQG-KGLRHVTHETRDLFRNPLLPDELSRFDGVVIDPPRAGA 344

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
           +     +  A  P I Y+SCNP S  RD + +++  +T++ + + DQF ++ H+E
Sbjct: 345 EAQVAELASARVPRIAYVSCNPVSYARDAARLIAAGYTLDWVQVVDQFRWSTHVE 399


>gi|332254754|ref|XP_003276497.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 1
           [Nomascus leucogenys]
 gi|332254756|ref|XP_003276498.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 2
           [Nomascus leucogenys]
 gi|332254758|ref|XP_003276499.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 3
           [Nomascus leucogenys]
          Length = 504

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA+H  RV
Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 369

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 370 LGIELVEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 419

Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339
             V+P R+GL    +  ++ +  I   +++SC        N   LC        +L    
Sbjct: 420 AVVNPARAGLHYKVIQAIRNFRAIRTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 479

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +++    D FP+T H E  +L  R
Sbjct: 480 VLQQAVPVDLFPHTPHCELVLLFTR 504


>gi|322788773|gb|EFZ14341.1| hypothetical protein SINV_01191 [Solenopsis invicta]
          Length = 559

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 30/214 (14%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           +Y++E L      + +R    +F Q N  G  V     +  A   +   LL++ CG G  
Sbjct: 353 EYIEETLL----GMKFRISPQAFFQVNTLGAEVLYKAAIDLAEPTLDTALLDVCCGTGTI 408

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRL 282
            L  ++H   VL V+I   +++ A+ N   N++ N +     +++     + R  + N +
Sbjct: 409 GLCFSKHCGEVLGVDIIPDAIKDAKENAIKNNIKNCEFFVGKAEDILLPVIYRTTKSNII 468

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339
                         VDPPR+GL      T+   +    ++YISC+P +  ++L  L+   
Sbjct: 469 A------------IVDPPRAGLHQKALLTLRKSKKLDRLVYISCDPHAATKNLIDLARPS 516

Query: 340 TIERLA---------LFDQFPYTRHMECGVLLVR 364
           + + L            D FP+T+H E  + L R
Sbjct: 517 SKQYLGDPLVPVKAIAVDMFPHTKHCELILCLER 550


>gi|332861165|ref|XP_521176.3| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 3
           [Pan troglodytes]
 gi|332861167|ref|XP_003317598.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 1
           [Pan troglodytes]
 gi|332861169|ref|XP_003317599.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 2
           [Pan troglodytes]
          Length = 504

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA+H  RV
Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 369

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 370 LGIELVEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 419

Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339
             V+P R+GL    +  ++ +  I   +++SC        N   LC        +L    
Sbjct: 420 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 479

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +++    D FP+T H E  +L  R
Sbjct: 480 VLQQAVPVDLFPHTPHCELVLLFTR 504


>gi|296103158|ref|YP_003613304.1| 23S rRNA methyluridine methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057617|gb|ADF62355.1| 23S rRNA methyluridine methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 379

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 18/157 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   + N+    + S +F   
Sbjct: 237 MWDLFCGVGGFGLHCATPEMQLTGIEIAAEAIACAKQSAAELGLTNLHFQALDSTQFATG 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
                E                + V+PPR G+  A    + Q  P +I+Y SCN  ++  
Sbjct: 297 QGNVPEL---------------VLVNPPRRGIGKALCDYLSQMAPDYIIYSSCNARTMAT 341

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           D++ L   + IER+ LFD FP+T H E   LL R P 
Sbjct: 342 DIAHLPG-YRIERVQLFDMFPHTAHYEVLTLLTRIPG 377


>gi|257485908|ref|ZP_05639949.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 125

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 16/132 (12%)

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRF 292
           V+AVE     VE A  N  +N ++NV+  +   S+  T A             D  +  F
Sbjct: 3   VVAVEGVATMVERAAVNAISNDLHNVQFFQADLSQPLTHA-------------DWAAEGF 49

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQF 350
             + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D F
Sbjct: 50  SAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMF 109

Query: 351 PYTRHMECGVLL 362
           P T H+E   L 
Sbjct: 110 PQTAHVEAMALF 121


>gi|291301985|ref|YP_003513263.1| deoxyribonuclease/rho motif-related TRAM [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571205|gb|ADD44170.1| deoxyribonuclease/rho motif-related TRAM [Stackebrandtia
           nassauensis DSM 44728]
          Length = 387

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 26/158 (16%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + +LY G G F+ VLA       RV+AVE         R   AAN + ++  V +   + 
Sbjct: 249 VWDLYAGAGLFAAVLADEVGPSGRVIAVE------SDTRAATAAN-LADLPQVEVRRSDV 301

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHIL-YISCNPDS 327
            +A+      + L   DI       + +DPPRSG   D    +  A P ++ Y++C+P +
Sbjct: 302 AEAV------HHLPSPDI-------VVLDPPRSGAGADLVKAIAAAAPRVITYVACDPAA 348

Query: 328 LCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           L RDL   +   ++I  L  +D FP T H E   +L R
Sbjct: 349 LARDLKTFAANGYSISTLEAYDAFPMTHHFETIAVLRR 386


>gi|89052577|ref|YP_508028.1| (Uracil-5)-methyltransferase [Jannaschia sp. CCS1]
 gi|88862126|gb|ABD53003.1| 23S rRNA m(5)U-1939 methyltransferase [Jannaschia sp. CCS1]
          Length = 419

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L LA+    V AVE A   ++A  +  A      +K +   +++    
Sbjct: 274 IADLFCGIGTFTLPLAQAAP-VHAVEAAPDLLDALDH--ATRFATGLKPITTEARDL--- 327

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRD 331
            RR    + L        +F  I +DPPR+G +  T  + +A+ P I  +SCNP +  RD
Sbjct: 328 YRRPLLPDELA-------KFDAIVIDPPRAGAEAQTEQIAKAHVPVIAAVSCNPVTFARD 380

Query: 332 LSILS-TTHTIERLALFDQFPYTRHME 357
            +IL+   + ++ +   DQF ++ H+E
Sbjct: 381 AAILTKAGYALDWVQPVDQFRWSPHVE 407


>gi|303257583|ref|ZP_07343595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderiales
           bacterium 1_1_47]
 gi|330999624|ref|ZP_08323333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parasutterella
           excrementihominis YIT 11859]
 gi|302859553|gb|EFL82632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderiales
           bacterium 1_1_47]
 gi|329574130|gb|EGG55706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parasutterella
           excrementihominis YIT 11859]
          Length = 483

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 17/190 (8%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDR 233
           G  +++R  +  FTQ N  +N  M+   L          +++ +CG GNF+L LA    +
Sbjct: 264 GVEVVFRPTD--FTQVNHRLNEVMVTRALRLLHLEPSSKVIDFFCGLGNFTLPLATRSAK 321

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR-EREFNRLKDIDIHSYRF 292
           VL +E +   V+ AR     N++ + K    +   F   +   +  +N+L  +D      
Sbjct: 322 VLGIEGSTELVDRARAGAKDNNLAD-KTEFEARNLFDWTLDDWDAVWNKLGGVD------ 374

Query: 293 KTIFVDPPRSG---LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLA--LF 347
             + +DPPR G   L  +     +    ++Y+SCNP +L RD ++L      + L+  + 
Sbjct: 375 -RVLIDPPREGAMALCRSLADTDKRPARLVYVSCNPATLARDAALLVREGGWKLLSAGVM 433

Query: 348 DQFPYTRHME 357
           + FP+T H+E
Sbjct: 434 NMFPHTAHVE 443


>gi|313681652|ref|YP_004059390.1| 23S rRNA m(5)u-747 methyltransferase [Sulfuricurvum kujiense DSM
           16994]
 gi|313154512|gb|ADR33190.1| 23S rRNA m(5)U-747 methyltransferase [Sulfuricurvum kujiense DSM
           16994]
          Length = 372

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 18/155 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L +L+CG G F+L  +     ++ +EI   ++E AR + A   + N++   + +  F   
Sbjct: 234 LWDLFCGVGGFALHCSAPEREIIGIEIEPEAIECARDSAAQLEMTNLRFESLDAASFGA- 292

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                  N  +  D        + V+PPR GL +     ++  +  H++Y SCN  +L +
Sbjct: 293 -------NSGEKPD-------AVIVNPPRRGLGEQLCKWLEKVSAEHLIYSSCNAVTLAK 338

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL  L  ++ I+++ LFD FP+T H E  V L ++
Sbjct: 339 DLERLG-SYEIQKVQLFDMFPHTEHYEVLVFLKKR 372


>gi|88855673|ref|ZP_01130336.1| 23S rRNA methyltransferase/RumA [marine actinobacterium PHSC20C1]
 gi|88814997|gb|EAR24856.1| 23S rRNA methyltransferase/RumA [marine actinobacterium PHSC20C1]
          Length = 410

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 19/154 (12%)

Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIA---ANHVNNVKIVRMSSK 267
           L+LY G G F+  +   F    ++ +VE    + + A  N++     H    ++ R   +
Sbjct: 260 LDLYGGVGLFAAAVGDKFGPSTKITSVESDAIATDHAAKNLSEWLGAHAETGRVDRWLRE 319

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325
               A   ER  +RL+          TI +DPPRSG     V ++ A     ++Y++C+P
Sbjct: 320 LLKNASAAER--SRLER--------STIVLDPPRSGAGREVVELLTAARPAQVVYVACDP 369

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            +  RD++  +   +T+ ++  FD FP+T H+E 
Sbjct: 370 VAFARDVAFFTNRGYTLAKVRAFDLFPHTHHVEA 403


>gi|111023795|ref|YP_706767.1| RNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110823325|gb|ABG98609.1| probable RNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 422

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 39/164 (23%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G F+  LA           A PS           HV++V+  R +  +   A+ 
Sbjct: 284 DLYGGVGVFAAALAGD---------AGPS----------GHVDSVESSRQAVSDGKAAL- 323

Query: 275 REREFNRLKDIDIHSYRF-----------KTIFVDPPRSGLDDATVGMVQAYP--HILYI 321
                + L  +  H+ R            + + +DPPR+G     +  V A     ++++
Sbjct: 324 -----SDLPQVRFHAERVERAIAGLASPPRVVVLDPPRAGAGRDVIDAVAAAGAERVVHV 378

Query: 322 SCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            C+P S  RD+ + L+  + ++ L  FD FP T H+EC  LL R
Sbjct: 379 GCDPASFARDIGLYLAQGYHVDELRAFDAFPLTHHVECIALLTR 422


>gi|332298136|ref|YP_004440058.1| deoxyribonuclease/rho motif-related TRAM [Treponema brennaborense
           DSM 12168]
 gi|332181239|gb|AEE16927.1| deoxyribonuclease/rho motif-related TRAM [Treponema brennaborense
           DSM 12168]
          Length = 430

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G +L+LY G G FS+ LA     V  VE  + ++  A  N+    V +       SK  T
Sbjct: 283 GRMLDLYSGAGTFSVFLAETASAVTLVEHNRDALAFAERNLTG--VPHTSYGISGSKWIT 340

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
                +   N   D  +         VDPPRSG++      +   A P +  +SC+P + 
Sbjct: 341 AYAEPDIRANGPYDCAV---------VDPPRSGMEKDVRNFLGRSAVPRVCSVSCDPATQ 391

Query: 329 CRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
            RD S ++   + +++L L D +P T H+E   LL
Sbjct: 392 ARDCSALIRAGYELKKLYLLDFYPQTSHIESLALL 426


>gi|295676471|ref|YP_003604995.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1002]
 gi|295436314|gb|ADG15484.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1002]
          Length = 476

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 22/189 (11%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++   +
Sbjct: 298 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISREVVGIEGSEVLTQ 357

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V            F      E   + L+ +      F    VDPPR G  
Sbjct: 358 RALANAELNGV-------AGHTSFACRNLFEVTADDLRALG----HFDKFLVDPPREGAL 406

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SC P +L RD  +L     + +    + + FP+T H
Sbjct: 407 AIAKALAEIAQSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFPHTSH 466

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 467 VESIALFER 475


>gi|154248084|ref|YP_001419042.1| putative RNA methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154162169|gb|ABS69385.1| putative RNA methyltransferase [Xanthobacter autotrophicus Py2]
          Length = 408

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 16/174 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           +F Q  A     + E VL AT+G +  + +L+ G G F+L LA H  RV A E    ++ 
Sbjct: 241 AFLQATAEGERVLAEAVLTATQGAR-KVADLFAGAGTFALRLAEH-ARVFAAESHAGALA 298

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           A     A+   + +K V   +++     RR      L   D        + +DPPR G +
Sbjct: 299 A--LTKASRTTSGLKAVDGEARDL---FRRPLMAAELAAFD-------AVVIDPPRQGAE 346

Query: 306 DATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
                + QA    ++Y+SCN  +  RD  +L +    +  +   DQF Y+ H+E
Sbjct: 347 AQARELAQAKLARVVYVSCNVATFARDARLLVAGGFRLGAVTPVDQFRYSPHVE 400


>gi|312212301|emb|CBX92384.1| similar to tRNA(m5U54)methyltransferase [Leptosphaeria maculans]
          Length = 595

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 31/171 (18%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFT 270
           L++ Y G+G F++ L+  F   L ++I+  S++ A  N   N +  ++ + +   +    
Sbjct: 426 LIDAYSGSGLFTITLSSLFKSSLGIDISTSSIDCATTNAELNSLPPSSTRFIAADAAALF 485

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
            +++   E                + +DPPR G D++ +  +  Y    ++Y+SCN  + 
Sbjct: 486 ASIKSPAEET-------------VVMIDPPRKGCDESFLRQLVEYGPARVVYVSCNVHTQ 532

Query: 329 CRDLSILSTT--------------HTIERLALFDQFPYTRHMECGVLLVRK 365
            RD+ +L                 + +E L  FD FP T H+E   +L RK
Sbjct: 533 ARDVGVLVGGMDGVDGGFGKGQGCYEMESLRGFDFFPQTGHVEGVAVLRRK 583


>gi|213857922|ref|ZP_03384893.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 97

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
           F  + +DP R+G       +++  P  I+Y+SCNP +L RD  ++++  + + RLA+ D 
Sbjct: 22  FDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDM 81

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E  VL  R
Sbjct: 82  FPHTGHLESMVLFER 96


>gi|239917806|ref|YP_002957364.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Micrococcus luteus NCTC 2665]
 gi|281413702|ref|ZP_06245444.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Micrococcus luteus NCTC 2665]
 gi|239839013|gb|ACS30810.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Micrococcus luteus NCTC 2665]
          Length = 490

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 10/196 (5%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD- 232
           G T  +R   + F Q +      +++ VL   +   G ++ +LY G G FS  LA     
Sbjct: 284 GGTKRFRVTGDGFWQVHQHAPATLVDAVLEDARVEPGQVVADLYGGAGLFSAYLADAVGP 343

Query: 233 --RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             RV +VE ++ + + AR N+  +      ++   + +   +  +  E   + D  +   
Sbjct: 344 EGRVYSVEASRRASKDARRNL--HEQPQASVLNGPTDKVLGSWLKYPE-RPVADGGLGGA 400

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
              T+ +DPPR+G     +  + A     I+Y+SC+P S  RDL+ L    + +ER  + 
Sbjct: 401 ALDTVVLDPPRAGAGRRAIERILALEPGRIVYVSCDPASFARDLAWLRDGGYEVERARVV 460

Query: 348 DQFPYTRHMECGVLLV 363
           D +P T H+E    LV
Sbjct: 461 DLYPDTHHLESVTALV 476


>gi|259502049|ref|ZP_05744951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
           DSM 16041]
 gi|259169962|gb|EEW54457.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
           DSM 16041]
          Length = 474

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 14/152 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G   L LA     V  +EI   +V  A  N   N ++N       ++E    
Sbjct: 331 LIDAYAGIGTIGLALAARVKAVRGMEIIPEAVADANANAQLNGISNAHYEVGKAEEVMPR 390

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCR 330
              E              +F  + VDPPR+GLDD  +  + +  P    Y+SC   SL R
Sbjct: 391 WLAE------------GLQFDALVVDPPRTGLDDELIKQILKVKPRKFAYVSCGMASLAR 438

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +L  L++ + ++ +   D  P T   E  V L
Sbjct: 439 NLRRLTSVYHVDYIQPIDMMPQTARCEAVVKL 470


>gi|84685766|ref|ZP_01013662.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665859|gb|EAQ12333.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Rhodobacterales
           bacterium HTCC2654]
          Length = 403

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 22/180 (12%)

Query: 188 TQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           T+P    +   +LE V  A++     +++L+ G+G F+L +A     VLAVE     + A
Sbjct: 243 TKPGETALTAAVLEAVGNASR-----VIDLFSGSGTFTLPIAERAG-VLAVEGVDDMLTA 296

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              +    H   +  V+  +++     RR    + L        R   + +DPPR+G + 
Sbjct: 297 --LDAGWRHSKGLHAVKTETRDL---FRRPLLSDEL--------RADAVVIDPPRAGAEA 343

Query: 307 ATVGMV-QAYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
             V +     P I  +SCNP +  RD  IL+   +T+  L + DQF ++ H+E      R
Sbjct: 344 QMVEIAASGVPRIAAVSCNPVTFARDAKILTDARYTLNWLVVVDQFRWSPHVELAACFTR 403


>gi|225574546|ref|ZP_03783156.1| hypothetical protein RUMHYD_02623 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038233|gb|EEG48479.1| hypothetical protein RUMHYD_02623 [Blautia hydrogenotrophica DSM
           10507]
          Length = 452

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 25/217 (11%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           ++++T+I   +DY  E L      L ++    SF QPN  +   +L  ++ +  G   D 
Sbjct: 256 KSDETRILYGQDYFYETLM----GLKFKISTFSFFQPNT-LAAEVLYNIVRSYVGETKDK 310

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LY G G  S +LA     V+ VEI + +VEAAR N   N + N + +         
Sbjct: 311 VVFDLYSGTGTISQILAEVSKEVVGVEIVEEAVEAARENARMNGLKNCRFIA------GD 364

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
            +R   E     D+         I +DPPR G+    +  +  Y    I+YISC   SL 
Sbjct: 365 VLRVLDELEEKPDM---------IVLDPPRDGIHPKALPKILDYGVDRIVYISCKVTSLA 415

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL +     + +E+    DQF  T H+E   LL RK
Sbjct: 416 RDLELFQERGYRVEKCTAVDQFCQTVHVETICLLERK 452


>gi|189055144|dbj|BAG38128.1| unnamed protein product [Homo sapiens]
          Length = 504

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 32/223 (14%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
           ++     Y+ E L     +L  R   ++F Q N      ML   +    G+  D  LL++
Sbjct: 297 QLLFGEPYIFEELL----SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDI 351

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
            CG G   L LA+H  RVL +E+ + +VE AR+  A N + N +     +++    + + 
Sbjct: 352 CCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKS 411

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NP 325
           +E       D  S       V+P R+GL    +  ++ +  I   +++SC        N 
Sbjct: 412 KE-------DGQSI---VAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNV 461

Query: 326 DSLC----RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             LC        +L     +++    D FP+T H E  +L  R
Sbjct: 462 IELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 504


>gi|119961512|ref|YP_947547.1| tRNA (Uracil-5-)-methyltransferase [Arthrobacter aurescens TC1]
 gi|119948371|gb|ABM07282.1| putative tRNA (Uracil-5-)-methyltransferase [Arthrobacter aurescens
           TC1]
          Length = 454

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 70/157 (44%), Gaps = 23/157 (14%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + +LY G G F+  LA        VL+VE A  +   AR N+       V+IV+   ++ 
Sbjct: 312 VADLYAGAGLFTAPLADVVGVTGSVLSVEGAPGTSRDARKNLHGE--AQVEIVQGRVEKV 369

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDS 327
               +R R F+             ++ +DPPR+G   A V   M      I Y+SC+P S
Sbjct: 370 LH--QRARSFD-------------SVVLDPPRAGAGKAVVKQLMATGPRAIAYVSCDPAS 414

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             RDL         +E L  FD +P T H+E   L+V
Sbjct: 415 FARDLGYFHQGGWRLESLRAFDLYPNTHHLETVGLMV 451


>gi|20149688|ref|NP_079193.2| tRNA (uracil-5-)-methyltransferase homolog isoform a [Homo sapiens]
 gi|269784676|ref|NP_001161442.1| tRNA (uracil-5-)-methyltransferase homolog isoform a [Homo sapiens]
 gi|269784680|ref|NP_001161444.1| tRNA (uracil-5-)-methyltransferase homolog isoform a [Homo sapiens]
 gi|74762656|sp|Q96GJ1|TRM2_HUMAN RecName: Full=tRNA (uracil-5-)-methyltransferase homolog; AltName:
           Full=TRM2 homolog
 gi|14495658|gb|AAH09437.1| TRMT2B protein [Homo sapiens]
 gi|18042937|gb|AAH20116.1| TRMT2B protein [Homo sapiens]
 gi|34783456|gb|AAH34272.1| TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae) [Homo
           sapiens]
 gi|57208528|emb|CAI42997.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|57208598|emb|CAI42155.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|57210112|emb|CAI42657.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|119623236|gb|EAX02831.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens]
 gi|119623241|gb|EAX02836.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens]
 gi|119623243|gb|EAX02838.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens]
          Length = 504

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 32/223 (14%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
           ++     Y+ E L     +L  R   ++F Q N      ML   +    G+  D  LL++
Sbjct: 297 QLLFGEPYIFEELL----SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDI 351

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
            CG G   L LA+H  RVL +E+ + +VE AR+  A N + N +     +++    + + 
Sbjct: 352 CCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKS 411

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NP 325
           +E       D  S       V+P R+GL    +  ++ +  I   +++SC        N 
Sbjct: 412 KE-------DGQSI---VAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNV 461

Query: 326 DSLC----RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             LC        +L     +++    D FP+T H E  +L  R
Sbjct: 462 IELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 504


>gi|167646120|ref|YP_001683783.1| (Uracil-5)-methyltransferase [Caulobacter sp. K31]
 gi|167348550|gb|ABZ71285.1| (Uracil-5)-methyltransferase [Caulobacter sp. K31]
          Length = 408

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 31/232 (13%)

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL-------------IYRQIENSF 187
            + A+   +    R    +I  + D+   R+T+AG  +             I      SF
Sbjct: 186 GVEAKSGGLSADARVRAARIAGEADFA--RVTMAGEMIYMARQPMVKLGPAIVSLPAGSF 243

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            Q        M+++ + A +G    +++LY G G F+  LA     V A + + P++ A 
Sbjct: 244 LQAVPQAEKAMVDFAVEAAQGAS-RIVDLYSGVGTFTFRLA-EIGGVHAADSSAPAIAAL 301

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +   A      +K +   +++    +RR    + LK +D+         +DPPR+G  + 
Sbjct: 302 KG--AVGTATGLKAIIAEARDL---VRRPVLSSELKKVDV-------AVLDPPRAGAYEQ 349

Query: 308 TVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
            V +  +    ++ +SCNP +  RD  +L      +ER+   DQF ++ H+E
Sbjct: 350 HVEIANSKVARVVGVSCNPATFARDAKVLIEAGFRLERVLPVDQFLWSPHIE 401


>gi|108799166|ref|YP_639363.1| deoxyribonuclease [Mycobacterium sp. MCS]
 gi|119868281|ref|YP_938233.1| deoxyribonuclease [Mycobacterium sp. KMS]
 gi|108769585|gb|ABG08307.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. MCS]
 gi|119694370|gb|ABL91443.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. KMS]
          Length = 404

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LY G G F+  LA       RVL V+ ++     A    A   + ++  VR+ +    +
Sbjct: 266 DLYGGAGVFAAALADQVGDGGRVLTVDTSR-----AAGRSARAALADLPQVRVVTDSVRR 320

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329
           A+  ER      D+ +         +DPPR+G     +  + A   P I++I C   S  
Sbjct: 321 ALSAERG---AADVAV---------LDPPRAGAGREIIDAISAAGVPRIIHIGCEAASFA 368

Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD+ + L   +T+E + +FD FP T H+EC  +L R
Sbjct: 369 RDVGLYLRAGYTVEEVRVFDSFPLTHHVECVAVLTR 404


>gi|73541780|ref|YP_296300.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia eutropha
           JMP134]
 gi|91207810|sp|Q46ZH7|RUMA_CUPPJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|72119193|gb|AAZ61456.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia eutropha
           JMP134]
          Length = 463

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 23/167 (13%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  LL+L+CG GNF+L LA     V+ +E ++     A  N   N +           EF
Sbjct: 309 QDRLLDLFCGIGNFTLPLATQGRSVMGIEGSEALTTRALANAGYNGL-------AEKTEF 361

Query: 270 TQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG-------LDDATVGMVQAYPH-ILY 320
                  R    +   DI +  RF    +DPPR G       L + +       P  I+Y
Sbjct: 362 AC-----RNLFEVTAEDIAALGRFDRWLIDPPREGALAVCKALGELSQQGSDVLPQRIVY 416

Query: 321 ISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +SC+P +L RD  +L     + +    + + FP+T H+E   +  R+
Sbjct: 417 VSCSPATLARDAGLLVHEAGYRLAGAGVVNMFPHTSHVESIAVFERR 463


>gi|42523529|ref|NP_968909.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|51316635|sp|Q6MLF5|Y2056_BDEBA RecName: Full=Uncharacterized RNA methyltransferase Bd2056
 gi|39575735|emb|CAE79902.1| hypothetical RNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
          Length = 388

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 17/194 (8%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
           +Y Q+  SFTQP+   N  + + +    K  +   L+E   G GN +       + VLA 
Sbjct: 203 LYCQVA-SFTQPSHTANKIICDVIYDWVKRYKAQRLIEFGSGIGNLTFPALAGAESVLAC 261

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI + S++    ++     N +       K+     RR+ +    +D      +F  +  
Sbjct: 262 EIDELSLQGLERSL-----NELPASMSHLKDRVTIYRRDFQKKLTQDFS----QFDGVLA 312

Query: 298 DPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
           +PPRSGL      +    P       +Y+SC P+S+ RDL  L    + ++ + + DQFP
Sbjct: 313 NPPRSGLMGFLNPLKSLAPEQRPEFFIYMSCYPESMARDLVTLQECGYRMQEVYIVDQFP 372

Query: 352 YTRHMECGVLLVRK 365
            T H E   LL R+
Sbjct: 373 QTDHYEVLGLLQRE 386


>gi|197101097|ref|NP_001124606.1| tRNA (uracil-5-)-methyltransferase homolog [Pongo abelii]
 gi|75071000|sp|Q5RFM7|TRM2_PONAB RecName: Full=tRNA (uracil-5-)-methyltransferase homolog; AltName:
           Full=TRM2 homolog
 gi|55725126|emb|CAH89430.1| hypothetical protein [Pongo abelii]
          Length = 486

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 28/205 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L L++H  RV
Sbjct: 293 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLSQHTSRV 351

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 352 LGIELVEQAVEDARWTAAFNGITNSEFHTGRAEKILPGLLKSKE-------DGQSI---V 401

Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339
             V+P R+GL    +  ++ +  I   +++SC        N   LC        +L    
Sbjct: 402 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 461

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            ++++   D FP+T H E  +L  R
Sbjct: 462 VLQQVVPVDLFPHTPHCELVLLFTR 486


>gi|10434333|dbj|BAB14223.1| unnamed protein product [Homo sapiens]
          Length = 504

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA+H  RV
Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 369

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 370 LGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 419

Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339
             V+P R+GL    +  ++ +  I   +++SC        N   LC        +L    
Sbjct: 420 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 479

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +++    D FP+T H E  +L  R
Sbjct: 480 VLQQAVPVDLFPHTPHCELVLLFTR 504


>gi|126434774|ref|YP_001070465.1| deoxyribonuclease [Mycobacterium sp. JLS]
 gi|126234574|gb|ABN97974.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. JLS]
          Length = 404

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 23/156 (14%)

Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LY G G F+  LA       RVL V+ ++     A    A   + ++  VR+ +    +
Sbjct: 266 DLYGGAGVFAAALADQVGDGGRVLTVDTSR-----AAGRSARAALADLPQVRVVTDSVRR 320

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329
           A+  ER      D+ +         +DPPR+G     +  + A   P I++I C   S  
Sbjct: 321 ALSAERG---AADVAV---------LDPPRAGAGREIIDAISAAGVPRIIHIGCEAASFA 368

Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD+ + L   +T+E + +FD FP T H+EC  +L R
Sbjct: 369 RDVGLYLRAGYTVEEVRVFDSFPLTHHVECVAVLTR 404


>gi|319405368|emb|CBI78987.1| RNA methyltransferase [Bartonella sp. AR 15-3]
          Length = 417

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 15/155 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G G F+L +A+  + V A+E        A  + AA     +K V    ++     R
Sbjct: 270 DLFAGVGTFTLRMAKKMN-VRAIE--NDGRALANLDQAARIATGLKTVVCEKRDL---FR 323

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R      L+  D       ++  DPPRSG ++    + +     ++ ISCNP +L RDLS
Sbjct: 324 RPLSAKELECFD-------SVVFDPPRSGAEEQVNELAKTTVARVVAISCNPITLARDLS 376

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +L +  +TIE++   DQF ++ H+E    L ++ +
Sbjct: 377 LLVAGGYTIEKVVPIDQFLWSPHIEVVATLSKRKT 411


>gi|37588964|gb|AAH08067.2| TRMT2B protein [Homo sapiens]
          Length = 289

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA+H  RV
Sbjct: 96  SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 154

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 155 LGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 204

Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339
             V+P R+GL    +  ++ +  I   +++SC        N   LC        +L    
Sbjct: 205 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 264

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +++    D FP+T H E  +L  R
Sbjct: 265 VLQQAVPVDLFPHTPHCELVLLFTR 289


>gi|239814807|ref|YP_002943717.1| 23S rRNA 5-methyluridine methyltransferase [Variovorax paradoxus
           S110]
 gi|239801384|gb|ACS18451.1| RNA methyltransferase, TrmA family [Variovorax paradoxus S110]
          Length = 482

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 24/200 (12%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD 232
           G T+ ++  +  FTQ N  IN  ++   L     +Q D  +++ +CG GNF+L LA    
Sbjct: 282 GVTMPFKPTD--FTQVNPHINRALVGKALRLLD-VQADERVIDWFCGLGNFTLPLASRAR 338

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            VL +E +   V  A  N + N         +S+  F         F     + +     
Sbjct: 339 EVLGIEGSDTLVARASDNFSKNQPATSARRALSATRFVA----RNLFEMTPAMLVADGSA 394

Query: 293 KTIFVDPPRSGLDDATVGMVQAY-------------PHILYISCNPDSLCRDLSIL--ST 337
               VDPPR G       M   +               I+Y+SCNP +L RD  +L    
Sbjct: 395 DKWLVDPPREGAFALAKAMADLHLQPELRTDGWTPPKRIVYVSCNPSTLARDAGLLVHQA 454

Query: 338 THTIERLALFDQFPYTRHME 357
            +      + + FP+T H+E
Sbjct: 455 GYRCTFAGVINMFPHTAHVE 474


>gi|269784678|ref|NP_001161443.1| tRNA (uracil-5-)-methyltransferase homolog isoform b [Homo sapiens]
 gi|57208529|emb|CAI42998.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|57208599|emb|CAI42156.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|57210113|emb|CAI42658.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|119623242|gb|EAX02837.1| chromosome X open reading frame 34, isoform CRA_e [Homo sapiens]
          Length = 459

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA+H  RV
Sbjct: 266 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 324

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 325 LGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 374

Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339
             V+P R+GL    +  ++ +  I   +++SC        N   LC        +L    
Sbjct: 375 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 434

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +++    D FP+T H E  +L  R
Sbjct: 435 VLQQAVPVDLFPHTPHCELVLLFTR 459


>gi|300870044|ref|YP_003784915.1| TrmA-family RNA methyltransferase [Brachyspira pilosicoli 95/1000]
 gi|300687743|gb|ADK30414.1| RNA methyltransferase (TrmA-family) [Brachyspira pilosicoli
           95/1000]
          Length = 390

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 34/154 (22%)

Query: 212 DLLELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +++ELY G+G FS+ +    +      ++++ EI+  +V+ A+            I++  
Sbjct: 255 NIVELYAGSGFFSVAIKNKLESLNIDYKLISSEISSDAVKIAK-----------DIIKED 303

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISC 323
           + E             LK I+   Y   ++FVDPPR GLD   +   +      I+YISC
Sbjct: 304 ASE------------TLKKIN---YNVDSLFVDPPREGLDKKVIENIIRIKPKKIIYISC 348

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           NP +  RD+++L   + +  L + D FP T H+E
Sbjct: 349 NPMTFARDINLLKEYYQLIDLNIIDMFPDTYHIE 382


>gi|147797617|emb|CAN65004.1| hypothetical protein VITISV_023490 [Vitis vinifera]
          Length = 1255

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 28/175 (16%)

Query: 176 RTLIYRQIENSFTQPNA--------GINVHMLEWVLAATKGIQGD----LLELYCGNGNF 223
           R L ++   NSF Q N          +   +L  ++    G++GD    +L+L+CG G  
Sbjct: 351 RGLTFQISANSFFQTNTHQQILRLYNVQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTI 410

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L L+R    V   E+   +V  AR N   N + N   +             E + N++ 
Sbjct: 411 GLTLSRRVRHVYGYEVVAQAVSDARRNAKLNGICNATFI-------------EGDLNKIG 457

Query: 284 DIDIHSY-RFKTIFVDPPRSGLD--DATVGMVQAYPHILYISCNPDSLCRDLSIL 335
           +     + +   +  DP R G+        +    P I+Y+SCNP +  RDL  L
Sbjct: 458 ENFGKDFPKPDVVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYL 512


>gi|330981853|gb|EGH79956.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
          aptata str. DSM 50252]
          Length = 84

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query: 1  MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
          MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1  MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61 IMF 63
           MF
Sbjct: 61 AMF 63


>gi|39943740|ref|XP_361407.1| hypothetical protein MGG_03881 [Magnaporthe oryzae 70-15]
 gi|145014577|gb|EDJ99145.1| hypothetical protein MGG_03881 [Magnaporthe oryzae 70-15]
          Length = 612

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 31/174 (17%)

Query: 212 DLLELYCGNGNFSLVLARHF------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +L++ YCG+G FS+  A  F       R + ++I   + E A  N   N+  + K     
Sbjct: 438 NLIDAYCGSGLFSITCAPLFISDEVKGRAIGIDIDGQATERAGLNAKLNNYPDGKC---- 493

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHILYISC 323
             EF +A    + F +L   D  +     + +DPPR G D +  T  +V     ++Y+SC
Sbjct: 494 --EFIEA-DAPKLFQKL---DGFNPDETAVVIDPPRKGCDVSFLTQLLVFKPKRLVYVSC 547

Query: 324 NPDSLCRDLSIL-------------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           N  +  RD+ IL                + IE +  FD FP T H+E   +L R
Sbjct: 548 NVHTQARDVGILVRGYVDGLPAPVGGARYKIESVRGFDLFPQTSHVEGVAVLTR 601


>gi|307700713|ref|ZP_07637738.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus
           mulieris FB024-16]
 gi|307613708|gb|EFN92952.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus
           mulieris FB024-16]
          Length = 450

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 61/216 (28%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD----------------RVLAVEIAKPS 243
           EW      G+   + +LYCG G F   +A                    +V+ VE+A  +
Sbjct: 246 EWAARLRPGL---VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAA 302

Query: 244 VEAARYN------------------------IAANHVNNVKIVRMSSKEFTQAMR----- 274
           +E A++                           +N  +++   R+ SK     +R     
Sbjct: 303 IEGAKHAAQLQRATPGQAPHENQTTQVTGGATGSNTTDDITTNRVISKPAANGLRFITAD 362

Query: 275 ---REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                R   +L   D+       + V+PPR GL +     ++    PH++Y SC   SL 
Sbjct: 363 AGKWIRNQKKLVTPDL-------LVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLV 415

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +L  + +    E L L D FP+TRH+E  VLL RK
Sbjct: 416 DNLHRMKSYRVTE-LKLVDMFPHTRHVETIVLLSRK 450


>gi|319784705|ref|YP_004144181.1| (uracil-5)-methyltransferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170593|gb|ADV14131.1| (Uracil-5)-methyltransferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 413

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 16/154 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G G+F+L LA   + V AVE    ++ A   +  +     +K V    ++     R
Sbjct: 270 DLFAGCGSFALRLAAKSE-VHAVEGDAAALSA--LDRGSRFATGLKRVTGERRDL---FR 323

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R   F  L   D        +  DPPR+G +D +  + ++  P++  +SCNP +L RDL 
Sbjct: 324 RPLTFKELNAFD-------GVVFDPPRAGAEDQSKQIARSDVPYVAAVSCNPVTLARDLR 376

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           IL    + ++ +   DQF ++ H+E  V L+ KP
Sbjct: 377 ILIDGGYALKSVTPIDQFLWSPHVE-AVALLEKP 409


>gi|240850084|ref|YP_002971477.1| RNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267207|gb|ACS50795.1| RNA methyltransferase [Bartonella grahamii as4aup]
          Length = 417

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 15/148 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           + ++L+ G G F+L +A+  + V AVE  + ++     N AA     +K V    ++   
Sbjct: 267 NAVDLFSGIGTFTLRIAKKMN-VHAVENNEDALR--NLNTAARFATGLKTVTCEKRDL-- 321

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330
             R       L+        F+++  DPPR+G +     + +     ++ ISCNP +  R
Sbjct: 322 -FRHPLSVKELEG-------FESVVFDPPRAGAEQQVRELAKTTVSRVVAISCNPTTFAR 373

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHME 357
           DLS+L +  +T+E++   DQF ++ H+E
Sbjct: 374 DLSLLVAGGYTVEKIIPIDQFLWSPHVE 401


>gi|326773475|ref|ZP_08232758.1| tRNA (Uracil-5-)-methyltransferase [Actinomyces viscosus C505]
 gi|326636705|gb|EGE37608.1| tRNA (Uracil-5-)-methyltransferase [Actinomyces viscosus C505]
          Length = 465

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 17/159 (10%)

Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +LELY G G F+L LA        V+++E  + +V  AR  +     ++    R++S   
Sbjct: 318 VLELYSGAGLFTLPLAALVGSGGEVVSLEGNEQAVRDARRTL-----HDQPTARLASGRV 372

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
           +    RE   +      +   R   + +DPPR G     +  V A     I+ ++C+P +
Sbjct: 373 SARSVRELAGS------LTGGRPDVVVLDPPRQGAGREVIEAVGALGAERIVLVACDPAA 426

Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L RDL ++L + + +  ++  D FP+T H E   +L R 
Sbjct: 427 LARDLGTLLRSGYALGSMSALDMFPHTHHFETIAVLERS 465


>gi|227875217|ref|ZP_03993359.1| 23S rRNA methyluridine methyltransferase [Mobiluncus mulieris ATCC
           35243]
 gi|227844122|gb|EEJ54289.1| 23S rRNA methyluridine methyltransferase [Mobiluncus mulieris ATCC
           35243]
          Length = 418

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 61/216 (28%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD----------------RVLAVEIAKPS 243
           EW      G+   + +LYCG G F   +A                    +V+ VE+A  +
Sbjct: 214 EWAARLRPGL---VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAA 270

Query: 244 VEAARY------------------------NIAANHVNNVKIVRMSSKEFTQAMR----- 274
           +E A++                           +N  +N+   ++ SK     +R     
Sbjct: 271 IEGAKHAAQLQRATPGQAPHENQTTQVTGDTTGSNTTDNITTNQVISKPAANGLRFITAD 330

Query: 275 ---REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                +   +L   D+       + V+PPR GL +     ++    PH++Y SC   SL 
Sbjct: 331 AGKWIKNQKKLVTPDL-------LVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLV 383

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +L  + +    E L L D FP+TRH+E  VLL RK
Sbjct: 384 DNLHRMKSYRVTE-LKLVDMFPHTRHVETIVLLSRK 418


>gi|319898605|ref|YP_004158698.1| enzyme [Bartonella clarridgeiae 73]
 gi|319402569|emb|CBI76114.1| putative enzyme [Bartonella clarridgeiae 73]
          Length = 417

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 29/203 (14%)

Query: 170 RLTVAGRTLIYRQ----------IEN---SFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           RL+V G  L+ R+          +E+    F Q        M + +L   K  + +  +L
Sbjct: 213 RLSVEGEVLVEREKPLIHFGDVCVESPIGGFLQATFEAETIMGDIILTHLKKAK-NAADL 271

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           + G G F+L +A+  + V A+E    ++  A  + AA     +K V    ++     RR 
Sbjct: 272 FAGVGTFTLRMAKKMN-VHAIENDGKAL--ANLDQAARIATGLKTVVCEKRDL---FRRP 325

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL 335
                L+  D       +I  +PPRSG +     + +     ++ ISCNP +L RDLSIL
Sbjct: 326 LSAKELECFD-------SIVFNPPRSGAEKQVNELAKTTVVRVVAISCNPVTLARDLSIL 378

Query: 336 ST-THTIERLALFDQFPYTRHME 357
            T  +TIE++   DQF ++ H+E
Sbjct: 379 VTGGYTIEKVVPIDQFLWSPHIE 401


>gi|297708304|ref|XP_002830909.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
           homolog A-like [Pongo abelii]
          Length = 625

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG     L LAR   RV+ VE+   +VE AR N   N ++NV+     +++   A
Sbjct: 436 VLDVCCGFRAIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPA 495

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           +      +RL    +         +DPPR+GL    +  ++   +   +LY+SCNP +  
Sbjct: 496 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAENLRRLLYVSCNPRAAM 544

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368
                LCR  S  +        +    D FP T H E  +L   V  P+G
Sbjct: 545 GNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 594


>gi|227821072|ref|YP_002825042.1| RNA methyltransferase [Sinorhizobium fredii NGR234]
 gi|227340071|gb|ACP24289.1| RNA methyltransferase [Sinorhizobium fredii NGR234]
          Length = 415

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +FTQ        M + VL    G    + +L+ G G F+L +AR   RV AVE    ++
Sbjct: 248 GAFTQATRPAEEAMAKLVLGHI-GKAKRVADLFAGIGTFALRIART-ARVHAVEGEDKAL 305

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +A   + AA +   +K V +  ++     RR      LK        F  +  DPPR+G 
Sbjct: 306 KA--LDFAARNTQGLKPVTVEKRDL---FRRPMMAQELK-------VFDAVVFDPPRAGA 353

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
           +     + ++    I  +SCNP +L RDLSIL +  + I  +   DQF ++ H+E 
Sbjct: 354 EAQCHELARSGVKKIAAVSCNPVTLARDLSILVAAGYRIRSVTPIDQFLWSAHVEA 409


>gi|330817172|ref|YP_004360877.1| RNA methyltransferase, TrmA family protein [Burkholderia gladioli
           BSR3]
 gi|327369565|gb|AEA60921.1| RNA methyltransferase, TrmA family protein [Burkholderia gladioli
           BSR3]
          Length = 464

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 22/182 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 286 FTQVNHQINRVLVGRALRLLAPRREDRVLDLFCGIGNFTLPLARLSREVVGIEGSDALTT 345

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N V+           F      E   + L+ +      F    VDPPR G  
Sbjct: 346 RALANAKENGVDG-------HTSFACRNLFEVTADDLRALGA----FDKFLVDPPREGAL 394

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                  + A  G       I+Y+SCNP +L RD  +L     + +    + + FP T H
Sbjct: 395 AVSKALAEIAQSGEGPLPKRIVYVSCNPATLARDAGLLVHEAGYRLRGAGVVNMFPNTSH 454

Query: 356 ME 357
           +E
Sbjct: 455 VE 456


>gi|319792730|ref|YP_004154370.1| RNA methyltransferase, trma family [Variovorax paradoxus EPS]
 gi|315595193|gb|ADU36259.1| RNA methyltransferase, TrmA family [Variovorax paradoxus EPS]
          Length = 478

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 24/205 (11%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227
           RL   G T+ ++  +  FTQ N  IN  ++   L     +Q D  +++ +CG GNF+L L
Sbjct: 273 RLPEFGVTMPFKPTD--FTQVNPHINRALVGKALRLLD-VQSDERVIDWFCGLGNFTLPL 329

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A     VL +E +   V  A  N+  N         +S   F         F     + +
Sbjct: 330 ASRAREVLGIEGSDTLVARATDNLKKNEPATSARRALSPTTFVA----RNLFEMTPAMLV 385

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH-------------ILYISCNPDSLCRDLSI 334
                    VDPPR G       M   +               I+Y+SCNP +L RD  +
Sbjct: 386 ADGSADKWLVDPPREGAFALAKAMADLHQQPELRTDGWTPPKRIVYVSCNPSTLARDAGL 445

Query: 335 L--STTHTIERLALFDQFPYTRHME 357
           L     +      + + FP+T H+E
Sbjct: 446 LVHQAGYRCTFAGVVNMFPHTAHVE 470


>gi|229819942|ref|YP_002881468.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Beutenbergia cavernae
           DSM 12333]
 gi|229565855|gb|ACQ79706.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Beutenbergia cavernae
           DSM 12333]
          Length = 376

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 33/205 (16%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWV--LAATKGIQGDLLELYCGNGNF 223
           R+ V G  L  R    SF Q N  +   +     +W+  LA +      +++LYCG G F
Sbjct: 194 RMAVNGLDLHLR--PQSFFQTNTAVAAALYREATDWIDELAPSS-----VVDLYCGVGPF 246

Query: 224 SL-VLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +L   AR  +R VL VE +  ++ +A ++ A   + N +        F          + 
Sbjct: 247 ALHAAARDTERRVLGVETSAEAIASATHSAADAGLANAR--------FAVGDATAFAADD 298

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
               D+       + V+PPR G+       ++     H++Y SC+  SL RDL+++ +  
Sbjct: 299 DGVPDV-------VIVNPPRRGIGPDLAAWLERSGVRHVVYSSCSSASLARDLAVMPSLR 351

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            + R  + D FP T H E   LL R
Sbjct: 352 PV-RARVLDMFPQTAHYEVLTLLER 375


>gi|83945409|ref|ZP_00957757.1| possible hypothetical RNA methyltransferase [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851243|gb|EAP89100.1| possible hypothetical RNA methyltransferase [Oceanicaulis
           alexandrii HTCC2633]
          Length = 423

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 98/232 (42%), Gaps = 35/232 (15%)

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDE---RLTVAGRTLIYRQIENSFTQPNAGINVH 197
           +L  R+   +L G+ N T++ +  D + E    +   G T +       F Q  A     
Sbjct: 204 SLALREAGAELAGKYNWTRVTIGGDPLIEFEAPVVKFGDTKVT-PAPGGFLQATAEGEAI 262

Query: 198 MLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +  +V  A K ++G       +L+ G G F+L LAR    VLAVE     + A     AA
Sbjct: 263 LAGFVDEAVKSLEGKGPFKAADLFAGAGAFALRLARTMP-VLAVEGESGLLHA--LQRAA 319

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-------LDD 306
                +K V         A  R+     +   ++  Y    + +DPPR+G       L D
Sbjct: 320 QRTPGLKPV--------DARVRDLALEPITPKELEGYSL--VVIDPPRAGAKAQAERLSD 369

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           + V      P I+ ISCNP +  RD +IL    + +  +   DQF +T H+E
Sbjct: 370 SMV------PVIVSISCNPATFARDAAILIEGGYRMGPVTPVDQFKWTGHVE 415


>gi|306818479|ref|ZP_07452202.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris
           ATCC 35239]
 gi|304648652|gb|EFM45954.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris
           ATCC 35239]
          Length = 418

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 81/211 (38%), Gaps = 51/211 (24%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD----------------RVLAVEIAKPS 243
           EW      G+   + +LYCG G F   +A                    +V+ VE+A  +
Sbjct: 214 EWAARLRPGL---VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAA 270

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH---------SYRFKT 294
           +E A++  AA              + TQ        N   DI  +           RF T
Sbjct: 271 IEGAKH--AAQLQRATPGQAPHENQTTQVTGDTTGSNTTDDITTNQVISKPAANGLRFIT 328

Query: 295 ------------------IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                             + V+PPR GL +     ++    PH++Y SC   SL  +L  
Sbjct: 329 ADAGKWIKNQKKLVTPDLLVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLVDNLHR 388

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + + + I  L L D FP+TRH+E  VLL RK
Sbjct: 389 MKS-YRITELKLVDMFPHTRHVETIVLLSRK 418


>gi|256827042|ref|YP_003151001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum
           DSM 15641]
 gi|256583185|gb|ACU94319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum
           DSM 15641]
          Length = 444

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 77/184 (41%), Gaps = 21/184 (11%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
             YR    SF Q N      ++  V+      +   + +LY G G F+L LA     V+A
Sbjct: 271 FTYRISAPSFFQVNTAQAEQLISLVIEGLDITETSHVADLYSGAGTFTLPLADRAGEVIA 330

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE A  SV   R N  A        VR             RE   +  +D        + 
Sbjct: 331 VESASSSVRDLRRN--AETAGVWVDVRGGDSA--------RELAHMGHLD-------ALV 373

Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           VDPPR+GL +A +  +       + Y+SC P +  RD++ L+   +T+ R+   D FP T
Sbjct: 374 VDPPRAGLTEAAIAGIAQAQPARLAYVSCEPATWARDVARLADYGYTLTRVTPVDLFPQT 433

Query: 354 RHME 357
            H E
Sbjct: 434 YHCE 437


>gi|99082734|ref|YP_614888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruegeria sp. TM1040]
 gi|99039014|gb|ABF65626.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruegeria sp. TM1040]
          Length = 414

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 32/195 (16%)

Query: 183 IENSFTQPNAGINV------------HMLEWVLAATKGIQGD---LLELYCGNGNFSLVL 227
           +E S TQ   G NV                 ++AA +   GD   +++L+ G G FSL L
Sbjct: 224 MEQSPTQAFGGANVCPPPGAFLQATPEGESALVAAVREGVGDARRIVDLFAGAGTFSLPL 283

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQAMRRE--REFNRLKD 284
           A+  + V AVE  +  ++A    +       +K V   +++ F   +  E  R+F ++ D
Sbjct: 284 AQTAE-VHAVEGEREMMQA--LELGWRKAQGLKKVTTETRDLFRNPLLVEDLRQFGKVYD 340

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIE 342
                     + +DPPR+G +     + +A  P I Y+SCNP +  RD  +L +  + + 
Sbjct: 341 ---------AVVIDPPRAGAEAQIAQLAKAKLPLISYVSCNPVTFARDAEVLVAAGYKLN 391

Query: 343 RLALFDQFPYTRHME 357
            + + DQF ++ H E
Sbjct: 392 WVQVVDQFRWSSHTE 406


>gi|297585038|ref|YP_003700818.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297143495|gb|ADI00253.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
           MLS10]
          Length = 462

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 163/389 (41%), Gaps = 55/389 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQ------IFRSEPIHYRMRAEFHIWHDGDD-LYHI 61
           YE+QL  K + L Q    + ++P  +      I    P HYR +++  +    DD +   
Sbjct: 95  YERQLQAKKELLEQAFSRYTKIPPHKLVIHDTIGMDNPWHYRNKSQMQVGQTEDDTVIAG 154

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-----------RLEPLLRAKLFQIDYL 110
           ++   + + + ID  +    L N +  E+   I           R + L+R+ + +  + 
Sbjct: 155 LYAADSHDLVDIDECIVQHPLTNEVNRELKRIISDLKLSIYDKERKKGLVRSLVVRTAF- 213

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDA--------LHARKYQIQLIGRANKTKICL 162
             ++D+  +TL+  +           R+++A        L+       L+    +TK   
Sbjct: 214 --ETDEWQLTLVISKKSFPKQDVFVARVKEAFPSVTSISLNVNPSDTPLV-FGEQTKTIE 270

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
               + ERL      L Y+    SF Q N      +L  ++    G +    +++ YCG 
Sbjct: 271 GESSIRERLG----ELDYQLAPESFFQLNPA-QTKVLYDIVKKMAGFKATDRVVDAYCGV 325

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+  +  A     +  ++I + +V  AR N A   + N      ++++     ++E    
Sbjct: 326 GSIGIWAASEAGELRGMDITEAAVANARRNAAEAGIANAHYETGTAEDILMKWQKE---- 381

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNPDSLCRDLSILST 337
                    +   +I VDPPRSGLD     TVG+++    ++Y+SCNP +L ++   L  
Sbjct: 382 --------GFTADSIIVDPPRSGLDRTLIETVGVLKPK-QLIYVSCNPSTLAKNADELGK 432

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365
             + I+ +   D FP T H+E   ++ R+
Sbjct: 433 YGYRIKDVQPVDMFPQTSHVEAVTVMYRE 461


>gi|94985877|ref|YP_605241.1| (Uracil-5)-methyltransferase [Deinococcus geothermalis DSM 11300]
 gi|94556158|gb|ABF46072.1| (Uracil-5)-methyltransferase [Deinococcus geothermalis DSM 11300]
          Length = 410

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 21/154 (13%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++LY G+G     LA HF RV  ++ A  ++   R  +A +   NV              
Sbjct: 275 VDLYGGSGAIGRHLAPHFARVTVLDTAAEALVRGRQAVAVSGERNVSY------------ 322

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
            R  +  RL ++         I VDPPR+GLD+     + A     ++Y+SC+P +  RD
Sbjct: 323 -RSGDAARLGELST-----DVIVVDPPRAGLDEGARDHIHASTADRLVYVSCDPATWARD 376

Query: 332 LSILSTTH-TIERLALFDQFPYTRHMECGVLLVR 364
           +  L+     +  +   D +P T H+E   +L R
Sbjct: 377 VGDLTRRGWRLGEVTPHDFYPQTSHVEVVSVLER 410


>gi|254464905|ref|ZP_05078316.1| (Uracil-5)-methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206685813|gb|EDZ46295.1| (Uracil-5)-methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 384

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 14/176 (7%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q        +L  V   T+G +  +++L+ G G F+L LA+  + V AVE  +  V
Sbjct: 211 GAFLQATKDGEAALLAAVQEITRGAK-RIVDLFAGCGTFALPLAQTAE-VHAVEGERDMV 268

Query: 245 EAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            A   +        +K V   +++ F   +  E       D++     F    +DPPR+G
Sbjct: 269 AA--LDAGWRKAKGLKKVTTETRDLFRNPLLPE-------DLNPFGAAFDAAVIDPPRAG 319

Query: 304 LDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357
            +     + +A  P I Y+SCNP S  RD   L+   + +  + + DQF ++ H+E
Sbjct: 320 AEAQVAQLAKARTPVIAYVSCNPVSFARDAKTLAAAGYDLGWVQVVDQFRWSAHIE 375


>gi|308234999|ref|ZP_07665736.1| TRAM domain protein [Gardnerella vaginalis ATCC 14018]
 gi|311114960|ref|YP_003986181.1| hypothetical protein HMPREF0421_21076 [Gardnerella vaginalis ATCC
           14019]
 gi|310946454|gb|ADP39158.1| hypothetical RNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 474

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 39/225 (17%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNFSLVLAR 229
           RT  Y      F Q +     H++ +VL   +   G       L +LY G+G F++ LA 
Sbjct: 252 RTFDYDVDARGFWQIHRAAPEHLVNYVLGLVRSALGGRTKNTVLWDLYSGSGLFTIPLAT 311

Query: 230 HFD------------------------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             +                        RVL++E A  +V+ AR NI    ++   +V   
Sbjct: 312 LANVGGDSSSAVGALGTTGTFGSAEPARVLSIEGAPIAVKNARRNIGRAGLSR-DVVEAL 370

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFK---TIFVDPPRSGLDDATVGMV--QAYPHILY 320
             +  Q +  +  F   K   I   RF     + +DPPR+G        +       ++Y
Sbjct: 371 QGDVAQTLESQ-VFKASKSSKI-VRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGARAVVY 428

Query: 321 ISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           ++C+P SL RD+       ++++ L  FD +P T H+E  VL+ R
Sbjct: 429 VACDPTSLARDVGTFREFGYSVQSLRAFDLYPETHHVESVVLMSR 473


>gi|301066818|ref|YP_003788841.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus
           casei str. Zhang]
 gi|300439225|gb|ADK18991.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           casei str. Zhang]
          Length = 455

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 23/215 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK---GIQG 211
             ++++     Y+ E  T+ GRT  ++    +F Q N      +  + LAA     G   
Sbjct: 258 GKESRLLAGLPYIQE--TLLGRT--FQLSPQAFLQLNPKQTETL--YTLAAKALDLGPHD 311

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L++ YCG G   + LA+    +  ++     +  A+ N  AN + N       +++   
Sbjct: 312 TLIDAYCGIGTVGISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFP 371

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
              +E              +   + VDPPR+GL+ A +  +     P  +YISCNP +L 
Sbjct: 372 KWVQE------------GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLA 419

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL  L+  + ++ +   D FP T   E  V   R
Sbjct: 420 RDLVFLTKRYKVDWIQSIDMFPQTARCEAVVKFTR 454


>gi|297242735|ref|ZP_06926673.1| SAM-dependent methyltransferase [Gardnerella vaginalis AMD]
 gi|296888946|gb|EFH27680.1| SAM-dependent methyltransferase [Gardnerella vaginalis AMD]
          Length = 478

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 39/225 (17%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNFSLVLAR 229
           RT  Y      F Q +     H++ +VL   +   G       L +LY G+G F++ LA 
Sbjct: 255 RTFDYDVDARGFWQIHRAAPEHLVNYVLGLVRSALGGRIKNTVLWDLYSGSGLFTIPLAT 314

Query: 230 HFD------------------------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             +                        RVL++E A  +V+ AR NI    +    +V   
Sbjct: 315 LANIGGDSSSAVGAIGTTGAFGSAEPARVLSIEGAPIAVKNARRNIGRAGLGR-DVVEAL 373

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFK---TIFVDPPRSGLDDATVGMV--QAYPHILY 320
             + +Q +  +  F   K   I   RF     + +DPPR+G        +       ++Y
Sbjct: 374 EGDVSQTLESQ-VFKASKSSKI-VRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGARSVVY 431

Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++C+P SL RD+       + ++ L  FD +P T H+E  VL+ R
Sbjct: 432 VACDPTSLARDVGTFRELGYNVQSLRAFDIYPNTHHVESVVLMSR 476


>gi|189218150|ref|YP_001938792.1| SAM-dependent RNA methyltransferase, TrmA family [Methylacidiphilum
           infernorum V4]
 gi|189185008|gb|ACD82193.1| SAM-dependent RNA methyltransferase, TrmA family [Methylacidiphilum
           infernorum V4]
          Length = 361

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 28/189 (14%)

Query: 188 TQPNAG---INVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           T P +G   +N  +LE +    K +       ++E YCG G F++ L++  +R+ A+E A
Sbjct: 190 TIPGSGFYQVNRFLLEKLKETVKKLISSNISFIIEGYCGAGFFTVPLSQSVERLYAIE-A 248

Query: 241 KPSVEAARYNIAANHVNNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            P   A    +   +V  +  K+    +  F+Q  + +            +Y F     D
Sbjct: 249 NPQSLAEAKKLGLRNVVFIEGKVEEKIADCFSQVEKSK-----------AAYLF-----D 292

Query: 299 PPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           PP  GL    +  +     P ++Y+SCNP +L RD+  L  ++ ++++   D FP T  +
Sbjct: 293 PPEEGLAQELLLWLIDHPLPQLVYVSCNPLTLKRDILRLEESYVLKKIIPLDLFPRTPQI 352

Query: 357 ECGVLLVRK 365
           E   +L+ K
Sbjct: 353 ESVAVLMAK 361


>gi|116495254|ref|YP_806988.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           casei ATCC 334]
 gi|116105404|gb|ABJ70546.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus casei ATCC
           334]
          Length = 455

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 27/217 (12%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE--WVLAATK---GI 209
             ++++     Y+ E  T+ GRT  ++    +F Q    +N    E  + LAA     G 
Sbjct: 258 GKESRLLAGLPYIQE--TLLGRT--FQLSPQAFLQ----LNPKQTETLYTLAAKALDLGP 309

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG G   + LA+    +  ++     +  A+ N  AN + N       +++ 
Sbjct: 310 HDTLIDAYCGIGTVGISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDI 369

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
                +E              +   + VDPPR+GL+ A +  +     P  +YISCNP +
Sbjct: 370 FPKWVQE------------GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPST 417

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L RDL  L+  + ++ +   D FP T   E  V   R
Sbjct: 418 LARDLVFLTKRYKVDWIQSIDMFPQTARCEAVVKFTR 454


>gi|13476218|ref|NP_107788.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|50401654|sp|Q985X9|Y7480_RHILO RecName: Full=Uncharacterized RNA methyltransferase mlr7480
 gi|14026978|dbj|BAB53574.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 412

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 16/154 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G G+F+L LA   + V AVE    ++ A   +  A     +K V    ++     R
Sbjct: 268 DLFAGCGSFALRLAAKSE-VHAVEGDAAALSA--LDRGARFATGLKRVTGERRDL---FR 321

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R   F  L   D        +  DPPR+G +D +  + ++  P +  +SCNP +L RDL 
Sbjct: 322 RPLTFKELNTFD-------GLVFDPPRAGAEDQSKQIARSDVPFVAAVSCNPVTLARDLR 374

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           IL    + ++ +   DQF ++ H+E  V L+ KP
Sbjct: 375 ILIDGGYQVKSVTPIDQFLWSSHVE-AVALLDKP 407


>gi|89901550|ref|YP_524021.1| 23S rRNA 5-methyluridine methyltransferase [Rhodoferax
           ferrireducens T118]
 gi|122478810|sp|Q21UR3|RUMA_RHOFD RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|89346287|gb|ABD70490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodoferax
           ferrireducens T118]
          Length = 477

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 28/195 (14%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     VL VE ++  V 
Sbjct: 278 FTQVNPHINRVLVSRALRLLDAKRHERVIDWFCGLGNFTLPIATQAREVLGVEGSEALVA 337

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            +R N   N         +++  F         F    ++ I         VDPPR G  
Sbjct: 338 RSRQNFKLNQALAPVNKSLAATNFVA----RNLFEMTPELLIQDGAADKWLVDPPREGAV 393

Query: 304 -------------LD----DATVGMVQAYP--HILYISCNPDSLCRDLSIL--STTHTIE 342
                        LD       VG V   P   I+Y+SCNP +L RD  +L     +   
Sbjct: 394 SLVQALAELHQQKLDPIGHPPIVGAVGWMPPKRIVYVSCNPSTLARDADLLVHQAGYRCS 453

Query: 343 RLALFDQFPYTRHME 357
              + + FP+T H+E
Sbjct: 454 FAGVVNMFPHTAHVE 468


>gi|269978108|ref|ZP_06185058.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris
           28-1]
 gi|269933617|gb|EEZ90201.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris
           28-1]
          Length = 450

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 61/216 (28%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD----------------RVLAVEIAKPS 243
           EW      G+   + +LYCG G F   +A                    +V+ VE+A  +
Sbjct: 246 EWAARLRPGL---VWDLYCGVGGFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAA 302

Query: 244 VEAARY------------------------NIAANHVNNVKIVRMSSKEFTQAMR----- 274
           +E A++                           +N  +N+   ++ SK     +R     
Sbjct: 303 IEGAKHAAQLQRATPGQAPHENQTTQVTGDTTGSNTTDNITTNQVISKPAANGLRFITAD 362

Query: 275 ---REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                +   +L   D+       + V+PPR GL +     ++    PH++Y SC   SL 
Sbjct: 363 AGKWIKNQKKLVTPDL-------LVVNPPRRGLGNELSKWIEKSEIPHVIYSSCYQPSLV 415

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +L  + +    E L L D FP+TRH+E  VLL RK
Sbjct: 416 DNLHRMKSYRVTE-LKLVDMFPHTRHVETIVLLSRK 450


>gi|119623237|gb|EAX02832.1| chromosome X open reading frame 34, isoform CRA_b [Homo sapiens]
          Length = 385

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA+H  RV
Sbjct: 192 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 250

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 251 LGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 300

Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLC----RDLSILSTTH 339
             V+P R+GL    +  ++ +  I   +++SC        N   LC        +L    
Sbjct: 301 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPF 360

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +++    D FP+T H E  +L  R
Sbjct: 361 VLQQAVPVDLFPHTPHCELVLLFTR 385


>gi|319406943|emb|CBI80580.1| putative enzyme [Bartonella sp. 1-1C]
          Length = 417

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q        M E +LA  K  + +  +L+ G G F+L +A+  + V A+E    ++
Sbjct: 241 GGFLQATFEAETVMGEIILAHFKKAK-NAADLFAGVGTFALRMAKKMN-VHAIENNGEAL 298

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A  + AA     +K V    ++  +     +E             F ++  DPPRSG 
Sbjct: 299 --ANLDQAARIATGLKTVVCEKRDLFRCPLSAKELEC----------FDSVVFDPPRSGA 346

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +     + +A    ++ +SCNP +L RDLS+L +  + IE++   DQF ++ H+E
Sbjct: 347 EKQVNELAKATVARVVAVSCNPITLARDLSLLVAGGYIIEKVVPIDQFLWSPHIE 401


>gi|187923829|ref|YP_001895471.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           phytofirmans PsJN]
 gi|187715023|gb|ACD16247.1| RNA methyltransferase, TrmA family [Burkholderia phytofirmans PsJN]
          Length = 472

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 24/190 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E ++  V 
Sbjct: 294 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISKEVVGIEGSE--VL 351

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            AR  +A   +N V         F       R    +   D+ +   F    +DPPR G 
Sbjct: 352 TAR-ALANAELNGVA----GHTSFAC-----RNLFEITADDMRALGHFDKFLIDPPREGA 401

Query: 304 --LDDATVGMVQA-----YPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
             +  A V + Q+        I+Y+SC P +L RD  +L     + +    + + FP+T 
Sbjct: 402 LAVAKALVEIAQSGDGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFPHTS 461

Query: 355 HMECGVLLVR 364
           H+E   L  R
Sbjct: 462 HVESIALFER 471


>gi|242006183|ref|XP_002423933.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
           corporis]
 gi|212507203|gb|EEB11195.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
           corporis]
          Length = 587

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 29/211 (13%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223
           Y+ E+  + G+T  +R    +F Q N  +   +L   +A    +  D  LL++ CG G+ 
Sbjct: 388 YITEK--ILGKT--FRISPQAFFQINTNV-AEILYDSIAELSELSKDVTLLDVCCGTGSI 442

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + L+     VL +EI+  ++  A+ N   N VNN +     +++             L 
Sbjct: 443 GICLSDKCGEVLGLEISSEAIADAKANAELNGVNNTQFFSGKAEDI------------LN 490

Query: 284 DIDIHSYRFKTI-FVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD-LSILSTTHTI 341
            + + + + + I  VDPPR+GL    +   +    ++Y+SC+P +  ++ L +      I
Sbjct: 491 CVALKATKKEIIAVVDPPRAGLPLIQIRKNKLIKKLIYVSCDPKAAMKNFLDLGRAASKI 550

Query: 342 ERLALF--------DQFPYTRHMECGVLLVR 364
            R   F        D FP+T H E  +   R
Sbjct: 551 YREEAFLPVKAIPVDLFPHTSHCELVIYFER 581


>gi|325288913|ref|YP_004265094.1| RNA methyltransferase, TrmA family [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964314|gb|ADY55093.1| RNA methyltransferase, TrmA family [Syntrophobotulus glycolicus DSM
           8271]
          Length = 518

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 34/170 (20%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  +L+LA   + V  +E    ++  A  N A N ++NVK +           R
Sbjct: 364 DLYCGIGTITLLLAGMAENVTGMEENSLAIADAAQNAAENKISNVKFIE---------GR 414

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
            E      KD      R   + VDPPR+G++   +  ++   P  I+Y+SC+P ++ RD+
Sbjct: 415 VEDRIGEQKD------RPDLVVVDPPRAGMNKRVIAALLDRKPQSIIYVSCDPATMARDV 468

Query: 333 SILSTTHTIE-----------------RLALFDQFPYTRHMECGVLLVRK 365
            +L+    I                   +   D F +T  +EC V L R+
Sbjct: 469 GMLANGMEIPEGKGAGLKRLKGAYRVVEVQPVDMFGWTESVECVVKLERR 518


>gi|322437064|ref|YP_004219276.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX9]
 gi|321164791|gb|ADW70496.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX9]
          Length = 424

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
           F+ L+   +   R   I +DPPR+GL      ++   A P I+Y+SC+P +L RDL++L 
Sbjct: 336 FDFLRAAVLQRERPDLIVLDPPRAGLGTEGSALLARIAPPEIVYVSCDPVTLARDLAVLL 395

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             +    + L D FP T H+E  V L R
Sbjct: 396 PHYRATAVHLVDLFPQTFHIETVVTLER 423


>gi|94311050|ref|YP_584260.1| 23S rRNA 5-methyluridine methyltransferase [Cupriavidus
           metallidurans CH34]
 gi|93354902|gb|ABF08991.1| 23S rRNA (uracil-5-)-methyltransferase [Cupriavidus metallidurans
           CH34]
          Length = 491

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 24/183 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L        D LL+L+CG GNF+L LA     V+ +E ++    
Sbjct: 313 FTQVNHQINRVLIGRALRLLDAKPTDRLLDLFCGIGNFTLPLATQGASVMGIEGSEVLTT 372

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG- 303
            A  N   N +        +   F       R    +   DI +  RF    VDPPR G 
Sbjct: 373 RALANAEYNGL-------AAKTSFAC-----RNLFEVTAEDIAALGRFDRWLVDPPREGA 420

Query: 304 --LDDATVGMVQAYPHIL-----YISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
             +  A   + QA   +L     Y+SC+P +L RD  +L     + +    + + FP+T 
Sbjct: 421 LAVCKALAELSQAGSDVLPKRIVYVSCSPATLARDAGLLVHEAGYRLAGAGVVNMFPHTS 480

Query: 355 HME 357
           H+E
Sbjct: 481 HVE 483


>gi|319403929|emb|CBI77517.1| putative enzyme [Bartonella rochalimae ATCC BAA-1498]
          Length = 417

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 28/181 (15%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q        M E +LA  K  + +  +L+ G G F+L +A+  + V A+E    ++
Sbjct: 241 GGFLQATFEAETVMGEIILAHLKKAK-NAADLFAGVGTFTLRMAKKMN-VHAIENNGEAL 298

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG- 303
             A  + AA     +K V    ++     RR      L+  D       ++  DPPRSG 
Sbjct: 299 --ANLDQAARIATGLKTVVCEKRDL---FRRPLSAKELECFD-------SVVFDPPRSGA 346

Query: 304 ------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
                 LD  TV  V A      +SCNP +L RDLS+L +  + IE++   DQF ++ H+
Sbjct: 347 EEQVNELDKTTVARVVA------VSCNPITLARDLSLLVAGGYIIEKVVSIDQFLWSPHI 400

Query: 357 E 357
           E
Sbjct: 401 E 401


>gi|143581809|sp|Q1LLI5|RUMA_RALME RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 466

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 81/182 (44%), Gaps = 22/182 (12%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L        D LL+L+CG GNF+L LA     V+ +E ++    
Sbjct: 288 FTQVNHQINRVLIGRALRLLDAKPTDRLLDLFCGIGNFTLPLATQGASVMGIEGSEVLTT 347

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-- 303
            A  N   N +         + + + A R   E    +DI     RF    VDPPR G  
Sbjct: 348 RALANAEYNGL---------AAKTSFACRNLFEVT-AEDIAALG-RFDRWLVDPPREGAL 396

Query: 304 -LDDATVGMVQAYPHIL-----YISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
            +  A   + QA   +L     Y+SC+P +L RD  +L     + +    + + FP+T H
Sbjct: 397 AVCKALAELSQAGSDVLPKRIVYVSCSPATLARDAGLLVHEAGYRLAGAGVVNMFPHTSH 456

Query: 356 ME 357
           +E
Sbjct: 457 VE 458


>gi|169837711|ref|ZP_02870899.1| hypothetical protein cdivTM_11537 [candidate division TM7
           single-cell isolate TM7a]
          Length = 430

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 21/148 (14%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++++LY G G+  L +    + V  VEI + +V   + NI        KI+  ++K    
Sbjct: 294 NVVDLYSGVGSIGLTIGG--NNVTLVEINENAVREMQKNI--------KILGKNAKAILA 343

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329
              +  E+     +         I VDPPR+GL  D    ++   P  I+Y+SCNP +  
Sbjct: 344 PSEKALEYISKDSL---------IIVDPPRAGLHKDVIDKLISEKPKRIIYLSCNPVTQA 394

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHME 357
           RD++ LS  + I+    ++ FP T H+E
Sbjct: 395 RDIAKLSEKYGIKAHRGYNFFPKTPHIE 422


>gi|332290054|ref|YP_004420906.1| 23S rRNA methyluridine methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330432950|gb|AEC18009.1| 23S rRNA methyluridine methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 387

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 24/156 (15%)

Query: 215 ELYCGNGNFSLVLARHFDRV------LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+CG G F L  A    +V      + +EI++ ++ +AR       + N     + + +
Sbjct: 244 DLFCGVGGFGLHCALARKKVEPEVSLVGIEISESAIRSARLAAEKAGLYNAIFQDLDASK 303

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPD 326
           F        + N+    D+       + V+PPR G+ +  +  + +  P  +LY SCN  
Sbjct: 304 F--------QANQGDKPDL-------VIVNPPRRGIGEKLIQYLNELQPRFLLYSSCNVT 348

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           ++ +DL  LS  H + ++ LFD FP+T H E  VLL
Sbjct: 349 TMQQDLQRLSGYH-LNKVQLFDMFPHTAHYEVLVLL 383


>gi|110633094|ref|YP_673302.1| (Uracil-5)-methyltransferase [Mesorhizobium sp. BNC1]
 gi|110284078|gb|ABG62137.1| 23S rRNA m(5)U-1939 methyltransferase [Chelativorans sp. BNC1]
          Length = 413

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 91/216 (42%), Gaps = 41/216 (18%)

Query: 170 RLTVAGRTLIYRQ-------------IENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           RL+V G  L+ R+                 F Q        M   V A  KG +  + +L
Sbjct: 213 RLSVGGEVLVEREKPVVMFGDVPVAIPPGGFLQATEQAEEAMAGLVTAHFKGAK-HVADL 271

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           + G+G F+L LAR   RV AVE        A    AA   + +K V +  ++        
Sbjct: 272 FAGSGTFALRLARQ-ARVHAVE--SEGAALAALEDAAKGASGLKPVSVERRDL------- 321

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSG-------LDDATVGMVQAYPHILYISCNPDSLC 329
             FNR   +     ++  +  DPPR G       L  +TV  V A      +SCNP +L 
Sbjct: 322 --FNR-PILAKELAQYDGLVFDPPRVGAEAQCRQLARSTVNRVAA------VSCNPGTLA 372

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDLSIL    + I ++   DQF ++ H+E   LL R
Sbjct: 373 RDLSILVEGGYRIAKVTPIDQFLWSPHVEVVALLER 408


>gi|303325854|ref|ZP_07356297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio sp.
           3_1_syn3]
 gi|302863770|gb|EFL86701.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio sp.
           3_1_syn3]
          Length = 67

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 310 GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           G++   P  ILYISCNP +L RD   L T +++ERLA  D FP+T H+EC
Sbjct: 10  GLLALRPQTILYISCNPATLARDADGLQTRYSLERLAAVDLFPHTPHLEC 59


>gi|57997161|emb|CAI46112.1| hypothetical protein [Homo sapiens]
          Length = 459

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 38/226 (16%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
           ++     Y+ E L     +L  R   ++F Q N      ML   +    G+  D  LL++
Sbjct: 252 QLLFGEPYIFEELL----SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDI 306

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
            CG G   L LA+H  RVL +E+ + +VE AR+  A N + N +     +++    + + 
Sbjct: 307 CCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKS 366

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY------------------PHI 318
           +E       D  S       V+P R+GL    +  ++ +                   ++
Sbjct: 367 KE-------DGQSI---VAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSRKLHGESTRNV 416

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + + C PD   +   +L     +++    D FP+T H E  +L  R
Sbjct: 417 IELCCPPDPAKK---LLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 459


>gi|317121334|ref|YP_004101337.1| RNA methyltransferase, TrmA family [Thermaerobacter marianensis DSM
           12885]
 gi|315591314|gb|ADU50610.1| RNA methyltransferase, TrmA family [Thermaerobacter marianensis DSM
           12885]
          Length = 685

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           RV A+E+   + E AR N A N + NV+ V  + +E    +                   
Sbjct: 455 RVTAIEVVPEATEDARTNAALNGLENVEFVTGAVEEVLPHL--AAALQEAAGTGPGRGGP 512

Query: 293 KTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHT 340
             + +DPPR G D A +        P I+Y+SCNP +L RDL++L  T +
Sbjct: 513 DVVLLDPPRKGCDPAALAACLELAPPRIVYVSCNPVTLARDLAVLCDTGS 562


>gi|226323269|ref|ZP_03798787.1| hypothetical protein COPCOM_01041 [Coprococcus comes ATCC 27758]
 gi|225208459|gb|EEG90813.1| hypothetical protein COPCOM_01041 [Coprococcus comes ATCC 27758]
          Length = 87

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 295 IFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFP 351
           +F+DPPR+G D+      V+  P  I+YISCNP++L RDL  L+   + ++++   + F 
Sbjct: 11  LFMDPPRAGSDEKFMASAVKMGPEKIVYISCNPETLARDLKYLTKKGYQVKKIQPVEMFA 70

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   LL +K
Sbjct: 71  FTEHVETVCLLSKK 84


>gi|254488424|ref|ZP_05101629.1| 23S rRNA (uracil-5-)-methyltransferase [Roseobacter sp. GAI101]
 gi|214045293|gb|EEB85931.1| 23S rRNA (uracil-5-)-methyltransferase [Roseobacter sp. GAI101]
          Length = 401

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+ G G FSL LA   + V AVE   P + AA  +        +K V   +++    
Sbjct: 253 VIDLFAGCGTFSLPLAETAE-VHAVE-GDPKMTAA-LDHGWRMAKGLKPVTCEARDL--- 306

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRD 331
            RR    + +   D        + +DPPR+G +     +V+A P ++ Y+SCNP +  RD
Sbjct: 307 YRRPLLPDEMGKTD-------AVVLDPPRAGAEAQVAEIVKAMPPVIAYVSCNPVTFARD 359

Query: 332 LSIL-STTHTIERLALFDQFPYTRHME 357
            + L +  +T+  + + DQF ++ H+E
Sbjct: 360 AATLIAAGYTLNWVQVVDQFRWSSHVE 386


>gi|145224506|ref|YP_001135184.1| (Uracil-5)-methyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|145216992|gb|ABP46396.1| (Uracil-5)-methyltransferase [Mycobacterium gilvum PYR-GCK]
          Length = 402

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 20/134 (14%)

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL V+ ++ +  +AR   A   + NV +V  S +   +A+  +RE            R  
Sbjct: 286 VLTVDTSRGASRSAR--AALGDLGNVTVVTDSVR---RALGAQRE------------RAD 328

Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350
              +DPPR+G     + ++     P I++I C   S  RD+ +  T  + +E L ++D F
Sbjct: 329 VAVLDPPRTGAGREVIDLLAGAGVPRIIHIGCEAASFARDVGLYRTHGYAVEELQVYDSF 388

Query: 351 PYTRHMECGVLLVR 364
           P T H+EC  +L R
Sbjct: 389 PLTHHVECVAVLSR 402


>gi|169630075|ref|YP_001703724.1| hypothetical protein MAB_2992c [Mycobacterium abscessus ATCC 19977]
 gi|169242042|emb|CAM63070.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 388

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 24/156 (15%)

Query: 215 ELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LY G G F+  L     R   V++V+ ++P+  +A+     + + +++ V M       
Sbjct: 251 DLYGGVGVFAAALGEAVGRTGHVVSVDTSRPAFRSAK-----SALGDLRQVTMICGSVRH 305

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329
           A+R       L + D+         +DPPR+G     +G V A     +++I C   +  
Sbjct: 306 AIRD------LGEADV-------AVLDPPRAGAGREVIGKVAAANVSRVIHIGCEAAAFA 352

Query: 330 RDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD+ + L   + +  L +FD FP T H+E   LL R
Sbjct: 353 RDVGLYLERGYRVRELRVFDAFPLTHHIESFALLTR 388


>gi|158424731|ref|YP_001526023.1| putative RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158331620|dbj|BAF89105.1| putative RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 406

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 16/174 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF Q  A     + + V    +G +  + +L+CG G F+L LA H  RV   E  + ++ 
Sbjct: 240 SFLQATAAGEALLAQAVGEGVEGAR-SVADLFCGVGTFALRLASH-ARVRGYESNETAIT 297

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           A    I        + ++    E     RR      L+       +F+ + +DPPR G +
Sbjct: 298 ALLKAI-----RGTQGLKSVEGEVRDLFRRPLMAQELE-------KFEAVVIDPPRQGAE 345

Query: 306 DATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
                + ++    ++Y+SC+  +  RD  +L      +ER+  +DQF Y+ H+E
Sbjct: 346 AQARELARSKVERLVYVSCSAQTFARDARLLIDGGFRLERVTPYDQFRYSPHVE 399


>gi|254557749|ref|YP_003064166.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|254046676|gb|ACT63469.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
          Length = 481

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 295 IFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + VDPPR+GLD+  +  ++Q+ P  ++YISCNP +L +DL  L+  + ++ +   D FP 
Sbjct: 408 MVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALTRGYQVDYIQSIDMFPQ 467

Query: 353 TRHMECGVLLVRK 365
           T   E  V   ++
Sbjct: 468 TARCEAVVRFTKR 480


>gi|28379606|ref|NP_786498.1| RNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|300769546|ref|ZP_07079432.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308181836|ref|YP_003925964.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|50401757|sp|Q88SY9|Y3226_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_3226
 gi|28272446|emb|CAD65370.1| RNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|300492961|gb|EFK28143.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308047327|gb|ADN99870.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 481

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 295 IFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + VDPPR+GLD+  +  ++Q+ P  ++YISCNP +L +DL  L+  + ++ +   D FP 
Sbjct: 408 MVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALTRGYQVDYIQSIDMFPQ 467

Query: 353 TRHMECGVLLVRK 365
           T   E  V   ++
Sbjct: 468 TARCEAVVRFTKR 480


>gi|320531384|ref|ZP_08032352.1| TRAM domain protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136385|gb|EFW28365.1| TRAM domain protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 465

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +LELY G G F+L LA       +VL++E  + +V  AR  +  +    +   R+S++  
Sbjct: 318 VLELYSGAGLFTLPLASLVGAGGQVLSLEGNEQAVRDARRTLHDHPAARLASGRVSARSV 377

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
                  RE            R   + +DPPR G     +  V A     I+ ++C+P +
Sbjct: 378 -------RELAG----SFTGGRPDVVVLDPPRQGAGREVIEAVSALGAERIVLVACDPAA 426

Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L RDL ++L   + +  ++  D FP+T H E   +L R 
Sbjct: 427 LARDLGTLLRAGYVLGSMSALDMFPHTHHFETIAVLDRS 465


>gi|315925903|ref|ZP_07922108.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620724|gb|EFV00700.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 464

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 18/161 (11%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            G +  + +LYCG G  + VLA   + V  +E+   +V AAR N AAN + N   +    
Sbjct: 316 SGKKPAVFDLYCGVGTIAQVLAPIAEHVTGIELVPEAVNAARANAAANGLTNCTFIAGDV 375

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCN 324
           K          E  +L +        + I +DPPR G+    +  + A+     +Y+SC 
Sbjct: 376 KA---------EVGKLAEAP------EVIVLDPPREGIHPRALPDILAFAPACFVYVSCK 420

Query: 325 PDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             SL RDL + ++  + +E +   D FP T H+EC  L+ R
Sbjct: 421 ASSLARDLPAFVAAGYRVETVQCVDMFPQTVHVECIALIQR 461


>gi|326436196|gb|EGD81766.1| hypothetical protein PTSG_02479 [Salpingoeca sp. ATCC 50818]
          Length = 735

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 114/277 (41%), Gaps = 44/277 (15%)

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-RANKTKICLDRD---------- 165
           A++ L    L D A  + A RL++ +H     I ++  + + +  C+ +D          
Sbjct: 406 AVLFLTDAELEDGAVAKEAERLKEFVHEHNTPIDIMMLQVDNSASCMAKDRPAPHIIKGD 465

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQ---PNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
             +++E+L      L +R   +SF Q   P A +   ++      T      +L+L CG 
Sbjct: 466 SQFIEEKLL----GLNFRISPDSFFQVNTPGAEVLYSLIGDWCQLTDDKSDVVLDLCCGT 521

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF- 279
           G     LA     V+ VE+ + +V  A+ N   N + NV      ++E    + ++R+  
Sbjct: 522 GTIGQTLASRVQHVIGVEMVEDAVIDAKANAQRNGITNVTYHTGKAEEVVPELVKDRDTA 581

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDS-------LC 329
           ++L              VDPPR+GL  + V  +   +    ++Y+SCN          LC
Sbjct: 582 DKL-----------IAVVDPPRAGLHPSVVHAIRRCEGIQRLIYVSCNLKGASQNLVDLC 630

Query: 330 RDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           R  S         I +    D FP+T H E  + L R
Sbjct: 631 RPPSKRYRGAPFEIIKAVPVDMFPHTDHCEVVLYLSR 667


>gi|191638764|ref|YP_001987930.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23]
 gi|190713066|emb|CAQ67072.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23]
 gi|327382805|gb|AEA54281.1| RNA methyltransferase, TrmA family [Lactobacillus casei LC2W]
 gi|327385992|gb|AEA57466.1| RNA methyltransferase, TrmA family [Lactobacillus casei BD-II]
          Length = 455

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 27/217 (12%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE--WVLAATK---GI 209
             ++++     Y+ E  T+ GRT  ++    +F Q    +N    E  + LAA     G 
Sbjct: 258 GKESRLLAGLPYIQE--TLLGRT--FQLSPQAFLQ----LNPKQTETLYTLAAKALDLGP 309

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG G   + LA+    +  ++     +  A+ N  AN + N       +++ 
Sbjct: 310 HDTLIDAYCGIGTVGISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDI 369

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
                +E              +   + VDPPR+GL+ A +  +     P  +YISCNP +
Sbjct: 370 FPKWVQE------------GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPST 417

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L RDL  L+  + ++ +   D FP T   E  V   R
Sbjct: 418 LARDLVSLTKRYKVDWIQSIDMFPQTARCEAVVKFTR 454


>gi|315444837|ref|YP_004077716.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Mycobacterium sp. Spyr1]
 gi|315263140|gb|ADT99881.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Mycobacterium sp. Spyr1]
          Length = 402

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 20/134 (14%)

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL V+ ++ +  +AR   A   + NV +V  S +   +A+  +RE            R  
Sbjct: 286 VLTVDTSRGASRSAR--AALGDLGNVTVVTDSVR---RALGAQRE------------RAD 328

Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350
              +DPPR+G     + ++     P I++I C   S  RD+ +  T  + +E L ++D F
Sbjct: 329 VAVLDPPRTGAGREVIDLLAGAGVPRIIHIGCEAASFARDVGLYRTHGYAVEELQVYDSF 388

Query: 351 PYTRHMECGVLLVR 364
           P T H+EC  +L R
Sbjct: 389 PLTHHVECVAVLSR 402


>gi|209886014|ref|YP_002289871.1| hypothetical RNA methyltransferase [Oligotropha carboxidovorans
           OM5]
 gi|209874210|gb|ACI94006.1| hypothetical RNA methyltransferase [Oligotropha carboxidovorans
           OM5]
          Length = 413

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 20/190 (10%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
           R+  AG TL       SF QP       +   V+   KG +  + +L+CG G F+L LA 
Sbjct: 235 RVGRAGVTLP----PASFMQPTQAGEETLAALVIQRCKGAK-RIADLFCGFGPFALRLAE 289

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
            F RV A +    +++A   N A      +K +   +++     RR      L++     
Sbjct: 290 KF-RVAAFDSDGKAIDA--LNNAVRATQGLKPLTAVARDL---FRRPLVPQELRE----- 338

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTH-TIERLALF 347
             F  +  DPPR G +  +  +  +    ++ +SCNP +  RD  IL+     +  ++  
Sbjct: 339 --FDCVVFDPPRQGAEAQSRQLAASRLSRVVAVSCNPATFARDARILTGGGFRLASVSPV 396

Query: 348 DQFPYTRHME 357
           DQF +T H+E
Sbjct: 397 DQFRHTAHVE 406


>gi|109131524|ref|XP_001091317.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 4
           [Macaca mulatta]
          Length = 504

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 34/208 (16%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA+H  +V
Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSQV 369

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 370 LGIELVEQAVEDARWTAAFNGITNSEFHTGRAEKILPGLLKSKE-------DGQSV---V 419

Query: 295 IFVDPPRSGLDDATVGMV------------------QAYPHILYISCNPDSLCRDLSILS 336
             V+P R+GL    +  +                  ++  +I+ + C PDS  +    L 
Sbjct: 420 AVVNPARAGLHYKVIQAIRNCGAIRTLVFVSCKLHGESTRNIIELCCPPDSAKKH---LG 476

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
               +++    D FP+T H E  +L  R
Sbjct: 477 EPFVLQQAVPVDLFPHTPHCELVLLFTR 504


>gi|119623401|gb|EAX02996.1| HpaII tiny fragments locus 9C, isoform CRA_b [Homo sapiens]
 gi|119623402|gb|EAX02997.1| HpaII tiny fragments locus 9C, isoform CRA_b [Homo sapiens]
          Length = 562

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 14/116 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ VE+   +VE AR N   N ++NV+     +++    
Sbjct: 436 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 495

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNP 325
           +      +RL    +         +DPPR+GL    +  ++   +   +LY+SCNP
Sbjct: 496 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNP 540


>gi|86751561|ref|YP_488057.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86574589|gb|ABD09146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas
           palustris HaA2]
          Length = 412

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 17/180 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q  A     + E  L+  K ++  + +L+CG G F+L LA    RV+A +   P+V
Sbjct: 245 GAFLQATALGEQTLAELALSEIKRVK-LIADLFCGVGPFALRLATKA-RVVAYDSDAPAV 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A +   AA   + +K ++   ++     RR      L D       F  +  DPPR G 
Sbjct: 303 NALQK--AAQATSGLKPIKAEPRDL---FRRPLAPPELLD-------FDAVLFDPPRQGA 350

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME-CGVL 361
                 +  +  P I+ +SCN  +  RD  +L    + +E++   DQF YT H+E  GVL
Sbjct: 351 QAQAAQLAASKVPLIIAVSCNAQTFARDAKLLIDGGYRLEKVTPVDQFKYTPHVELVGVL 410


>gi|114685145|ref|XP_001166997.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 4
           [Pan troglodytes]
          Length = 562

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 14/116 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ VE+   +VE AR N   N ++NV+     +++    
Sbjct: 436 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 495

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNP 325
           +      +RL    +         +DPPR+GL    +  ++   +   +LY+SCNP
Sbjct: 496 L-----VSRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNP 540


>gi|240169709|ref|ZP_04748368.1| SAM-dependent methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 396

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 25/155 (16%)

Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LY G G F+ VL        RV  V+ A+ +   A   +A   +  V +V       ++
Sbjct: 258 DLYGGAGVFAAVLGEAVGESGRVWTVDSARAASRTAHAALA--DLPQVAVV-------SE 308

Query: 272 AMRREREFNRLK-DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSL 328
           ++RR  E   +  D+ +         +DPPR+G     + ++ A   P +++I C   S 
Sbjct: 309 SVRRMLEGQPVGADVAV---------LDPPRTGAGRDVIKLLAAARVPRVVHIGCEAASF 359

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
            RD+ +  S  + +E++ +FD FP T H+EC  LL
Sbjct: 360 ARDIGLYRSHDYVVEKIRVFDAFPLTHHVECVALL 394


>gi|315612146|ref|ZP_07887061.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315315707|gb|EFU63744.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 76

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 295 IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   + ++ +   D FP+
Sbjct: 1   MIVDPPRTGLDDKLLDTILTYVPDKMVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPH 60

Query: 353 TRHMECGVLLVRK 365
           T   E  V LV+K
Sbjct: 61  TARTEAVVKLVKK 73


>gi|397360|emb|CAA81021.1| yNucR endo-exonuclease [Saccharomyces cerevisiae]
 gi|486515|emb|CAA82134.1| RNC1 [Saccharomyces cerevisiae]
          Length = 617

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 13/103 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  ++  D+V+ VEI+  SV  A  N  AN V N + +          
Sbjct: 492 LVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFI---------V 542

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            + E+ F   + ID  S    ++ +DPPR G D+  +  + AY
Sbjct: 543 GKAEKLF---ESIDTPSEN-TSVILDPPRKGCDELFLKQLAAY 581


>gi|16552598|dbj|BAB71349.1| unnamed protein product [Homo sapiens]
          Length = 562

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 14/116 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ VE+   +VE AR N   N ++NV+     +++    
Sbjct: 436 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPT 495

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNP 325
           +       RL    +         +DPPR+GL    +  ++   +   +LY+SCNP
Sbjct: 496 L-----VGRLASQHL------VAILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNP 540


>gi|316932488|ref|YP_004107470.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315600202|gb|ADU42737.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris DX-1]
          Length = 413

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             +F Q  A +    L  +  A  G    + +L+CG G F+L LA    RV A +   P+
Sbjct: 244 PGAFLQATA-LGEQTLAGLAMAHLGRAKQVADLFCGVGPFALRLAEKV-RVFACDSDAPA 301

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V A     AA     +K V+  +++     RR      L+D       F  +  DPPR G
Sbjct: 302 VAA--LQKAAPGTPGLKPVKAEARDL---FRRPLAPPELRD-------FDAVLFDPPRQG 349

Query: 304 LDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
                  +  +  P ++ +SCN  +  RD  +L    + +E +   DQF YT H+E
Sbjct: 350 AQAQAAQLAASRVPLVIAVSCNATTFARDAKLLIDGGYRLEGVIPVDQFKYTPHVE 405


>gi|224010878|ref|XP_002294396.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969891|gb|EED88230.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 548

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 67/163 (41%), Gaps = 29/163 (17%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV--NNVKIV-RMSSK 267
           L+++ CG G   L L +      ++ V+IAKP++  AR N   N +  N  + V   + K
Sbjct: 376 LVDVCCGTGTIGLTLMKEGVVGSLVGVDIAKPAILDARANAEKNGMTTNTTRFVASPAEK 435

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCN 324
                M+R           I         VDP R GL      T+ M +    I+Y+SCN
Sbjct: 436 VLPDEMKR-----------ISQSCPVVAVVDPARDGLHGTVLKTLRMTERIQRIVYVSCN 484

Query: 325 P-DSLCRDLSILSTTHTIERLAL---------FDQFPYTRHME 357
           P  SLC D  +L    T +   L          D FP T H E
Sbjct: 485 PTGSLCPDAGLLCAPPTKKYPGLPFKVTMAQPCDMFPMTNHCE 527


>gi|315604322|ref|ZP_07879388.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314028|gb|EFU62079.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 449

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 34/166 (20%)

Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAA--------NHVNNVKI 261
           ++ELY G G FS+ LAR       V+ +E  + +V  A  N+AA         +V+   +
Sbjct: 304 IMELYSGAGLFSVPLARAVGESGHVVTLEGDEGAVCDAGENLAAFDWVDAFAGNVDREGV 363

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHIL 319
           V +S            +   + D+         +  DPPR+G        + A   P ++
Sbjct: 364 VDLSG-----------QLGAVPDV---------VVADPPRAGAGAEVCEAIAATGAPRVV 403

Query: 320 YISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            +SC+P +  RDL  L+   +T+  L  +D FP+T H+E   +L R
Sbjct: 404 LVSCDPAAGARDLRALTECGYTLASLQAWDLFPHTHHVEMVSVLSR 449


>gi|307292865|ref|ZP_07572711.1| (Uracil-5)-methyltransferase [Sphingobium chlorophenolicum L-1]
 gi|306880931|gb|EFN12147.1| (Uracil-5)-methyltransferase [Sphingobium chlorophenolicum L-1]
          Length = 402

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 17/150 (11%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +G + +L+CG G F+L L  +   V A E A+  V + +   AAN        RM +   
Sbjct: 260 EGAIADLFCGLGTFALALGPN-RPVYAAEAARDLVLSLKS--AANRAGR----RMVADH- 311

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSL 328
                  R+  R         RF  I +DPPR+G  +  + +  ++ P I YISCNP S 
Sbjct: 312 -------RDLFRRPLTPAEIDRFAGIVIDPPRAGAREQVLQLAASHVPVIAYISCNPASF 364

Query: 329 CRDLSILS-TTHTIERLALFDQFPYTRHME 357
            RD + L+   + +E +    QF ++ H+E
Sbjct: 365 ARDAAHLTDGGYRLESVRPVGQFRWSTHVE 394


>gi|118369094|ref|XP_001017752.1| hypothetical protein TTHERM_00437560 [Tetrahymena thermophila]
 gi|89299519|gb|EAR97507.1| hypothetical protein TTHERM_00437560 [Tetrahymena thermophila
           SB210]
          Length = 648

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 22/167 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            L++  G G   + LA     V+ +E+ + +   A+ NI  N + N K++          
Sbjct: 487 FLDICSGIGTIGICLANSAKEVIGIEMVETACNDAKINIEQNGITNYKVI---------C 537

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLC 329
            + E   N +       Y+   + VDPPR GL    V  +   +   H++Y++CNP ++ 
Sbjct: 538 SKVEDVINEIVGPLAGQYKIIGV-VDPPRPGLHANVVKAMRTCKGLDHLVYVACNPVAVT 596

Query: 330 RDLSILSTTHTIERLAL---------FDQFPYTRHMECGVLLVRKPS 367
            +L  L    +  R A           D FP T+H E    L R P+
Sbjct: 597 DNLLALCLPESKRRRAPAFHLTKYYGCDLFPQTKHFEGIFYLERYPN 643


>gi|121605471|ref|YP_982800.1| 23S rRNA 5-methyluridine methyltransferase [Polaromonas
           naphthalenivorans CJ2]
 gi|254766920|sp|A1VQF1|RUMA_POLNA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120594440|gb|ABM37879.1| 23S rRNA m(5)U-1939 methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 490

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 53/221 (23%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD 232
           G T+ ++  +  FTQ N  IN  ++   L    G+Q    +++ +CG GNF+L LA    
Sbjct: 277 GITMPFKPTD--FTQVNPHINQVLVSRALRLL-GVQPTERVIDWFCGLGNFTLPLATRAR 333

Query: 233 RVLAVEIAKPSVEAARYNI----AANHV----NNVKIVRMSSKEFTQAMRREREFNRLKD 284
            VL +E ++  V  +R N     A++HV       K V  +  E T AM        +KD
Sbjct: 334 EVLGIEGSEVLVARSRENYERNKASSHVRPALEATKFVARNLFEMTPAML-------VKD 386

Query: 285 IDIHSYRFKTIFVDPPRSG--------------------LDDA------TVGMVQAYPHI 318
                +      VDPPR G                     DD        +G       I
Sbjct: 387 GAAEKW-----LVDPPREGAFELFKSLAALHQQVVTGVPCDDGIHQQSLALGGWTPPSRI 441

Query: 319 LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
           +Y+SCNP +L RD  +L     +      + + FP+T H+E
Sbjct: 442 VYVSCNPATLARDAGVLVEGGGYRCTAAGVVNMFPHTAHVE 482


>gi|47223267|emb|CAF98651.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 764

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 25/167 (14%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G LL++ CG G F +  +   DRV+ VE+ + +VE A +N + N V N + +   ++   
Sbjct: 274 GTLLDVCCGTGAFGITTSPRVDRVVGVELMEQAVEDAHHNASLNRVLNCEFIPGRAEVVL 333

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS 327
             +  +          I         V+P R+GL    V  ++  P I   +Y+SC PD 
Sbjct: 334 PGLVSQ----------IGCRGSVAAVVNPARAGLHHKVVRALRNQPDIRRLVYVSCKPDG 383

Query: 328 LC----RDLSI-------LSTTHTIERLAL-FDQFPYTRHMECGVLL 362
                 R+L         L+       LAL  D FP+T H E  +L 
Sbjct: 384 EAMRNFRELCCAPDPQKKLTGEAFSPSLALPVDMFPHTAHCELVILF 430


>gi|322375229|ref|ZP_08049743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
 gi|321280729|gb|EFX57768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
          Length = 76

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 295 IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   + ++ +   D FP+
Sbjct: 1   MIVDPPRTGLDDKLLETILTYVPDKMVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPH 60

Query: 353 TRHMECGVLLVRK 365
           T   E  V LV+K
Sbjct: 61  TARTEAVVKLVKK 73


>gi|150395715|ref|YP_001326182.1| (Uracil-5)-methyltransferase [Sinorhizobium medicae WSM419]
 gi|150027230|gb|ABR59347.1| (Uracil-5)-methyltransferase [Sinorhizobium medicae WSM419]
          Length = 420

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +FTQ        M   VL    G    + +L+ G G F+L +AR   RV AVE    ++
Sbjct: 253 GAFTQATRPAEEAMARLVLGHV-GKAKRVADLFAGIGTFALRIARTA-RVHAVEGDDRAL 310

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +A   + AA +   +K V +  ++     RR      LK        F  +  DPPR+G 
Sbjct: 311 KA--LDFAARNTQGLKPVTVEKRDL---FRRPMMAQELK-------VFDAVVFDPPRAGA 358

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357
           +     + ++    I  +SCNP +L RDLSIL+   + I  +   DQF ++ H+E
Sbjct: 359 ETQCHELARSGVKKIAAVSCNPVTLARDLSILTAAGYRITDVTPIDQFLWSAHVE 413


>gi|145340943|ref|XP_001415576.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575799|gb|ABO93868.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 581

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 58/219 (26%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           EW   A+ G Q  LL++ CG G   L LAR   +V+ V+I + S+  A  N   N V+N 
Sbjct: 367 EW---ASPGGQSLLLDVCCGTGTIGLTLARAVKKVVGVDIVEESIRDAFTNAKLNGVDNT 423

Query: 260 -------------------KIVR-------------------MSSKEFTQAMRREREFNR 281
                               ++R                   +S+ E T+A+   +E   
Sbjct: 424 DWLAGKAEHVLPKVLNDYKTLIRPDGRAPKPFTAVSVLDDPDLSADEETEAIVEAKETTN 483

Query: 282 LKDIDI-HSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDSLCRDLSILST 337
            + +   H +      VDPPR+GL    +  ++       ++Y+SCN +++  ++  L  
Sbjct: 484 AELVGANHEFDDVVAIVDPPRAGLHRHVLSALRRENRLKRLVYVSCNANTMATNVIDLCV 543

Query: 338 THT------------IERLALFDQFPYTRHMECGVLLVR 364
                          ++ LAL D FP+T H+E  +LL R
Sbjct: 544 PQGADGNGGGVPFTPVKALAL-DLFPHTAHVEAVLLLER 581


>gi|25028353|ref|NP_738407.1| hypothetical protein CE1797 [Corynebacterium efficiens YS-314]
 gi|259507408|ref|ZP_05750308.1| SAM-dependent methyltransferase [Corynebacterium efficiens YS-314]
 gi|50401588|sp|Q8FPI1|Y1797_COREF RecName: Full=Uncharacterized RNA methyltransferase CE1797
 gi|23493638|dbj|BAC18607.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165033|gb|EEW49587.1| SAM-dependent methyltransferase [Corynebacterium efficiens YS-314]
          Length = 421

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 23/155 (14%)

Query: 215 ELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +LY G G F  V+ R     V +VE+++ S EA    +A   V               A 
Sbjct: 284 DLYGGVGLFVPVINRALGAHVHSVELSEGSAEAGDDALAGLPVT------------FHAG 331

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD 331
           R E   ++L        +   + +DPPR+G   D    +  A P  +++I C+P +  RD
Sbjct: 332 RVESVTSQLP-------KPHVVVLDPPRTGAGSDVVATIAGAKPQLVVHIGCDPATFARD 384

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           ++  S   +T++RLA+F+ FP T H E   +  RK
Sbjct: 385 VADWSAGGYTLDRLAVFNAFPATHHYETIGVFTRK 419


>gi|296157778|ref|ZP_06840612.1| RNA methyltransferase, TrmA family [Burkholderia sp. Ch1-1]
 gi|295892024|gb|EFG71808.1| RNA methyltransferase, TrmA family [Burkholderia sp. Ch1-1]
          Length = 472

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 80/193 (41%), Gaps = 30/193 (15%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE----IAK 241
           FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V+ +E    +  
Sbjct: 294 FTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISKEVMGIEGSEVLTS 353

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            ++  A  N  A H +     R   +     MR    F++               +DPPR
Sbjct: 354 RALANAELNGMAGHTSFA--CRNLFEVTADDMRALGHFDKF-------------LIDPPR 398

Query: 302 SG--------LDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
            G         + A  G       I+Y+SC P +L RD  +L     + +    + + FP
Sbjct: 399 EGALAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFP 458

Query: 352 YTRHMECGVLLVR 364
           +T H+E   L  R
Sbjct: 459 HTSHVESIALFER 471


>gi|38233983|ref|NP_939750.1| hypothetical protein DIP1398 [Corynebacterium diphtheriae NCTC
           13129]
 gi|51316648|sp|Q6NGV2|Y1398_CORDI RecName: Full=Uncharacterized RNA methyltransferase DIP1398
 gi|38200245|emb|CAE49929.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 420

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 21/157 (13%)

Query: 215 ELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LY G G+F+  +    D    V  VE A  +V A +  ++   V + KIV  +      
Sbjct: 278 DLYGGCGSFASAILSAVDNHGVVHCVESAPAAVSAGKRALS-QLVEDQKIVFHTET---- 332

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI-LYISCNPDSLC 329
               ER  N+L    +       + +DPPR G    TV  + Q+ P   ++I C+P +  
Sbjct: 333 ---VERAMNQLPAPTL-------VVLDPPRVGAGAETVRAIAQSGPQAAIHIGCDPATFA 382

Query: 330 RDLSILSTTHTI-ERLALFDQFPYTRHMECGVLLVRK 365
           RD++  S    I E+L +FD FP T H E   LL +K
Sbjct: 383 RDIAEWSRNGFILEKLRVFDAFPGTHHCETIGLLTKK 419


>gi|41053969|ref|NP_956223.1| tRNA (uracil-5-)-methyltransferase homolog A [Danio rerio]
 gi|28279548|gb|AAH45367.1| Trm2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Danio
           rerio]
          Length = 619

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 23/164 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   + LA+   +V+ +E+ + +V+ A  N  AN + NV+     +++    
Sbjct: 458 VLDVCCGTGTIGISLAKRVKKVIGIELCQEAVKDAEANAKANGLTNVEFHCGKAEDVFPT 517

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           +      N +   ++      T  VDPPR+GL    +  ++   H   ++Y++CN  +  
Sbjct: 518 I-----LNAVVSPNV------TAIVDPPRAGLHSKVILAIRKAEHLKRLVYVACNAKAAM 566

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +        +    D FP T H E  +L  R
Sbjct: 567 NNFIDLCRAPSNRVRGAAFRPVKAMAVDLFPQTMHCETILLFER 610


>gi|122890880|emb|CAM13119.1| novel protein (zgc:55519) [Danio rerio]
          Length = 619

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 23/164 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   + LA+   +V+ +E+ + +V+ A  N  AN + NV+     +++    
Sbjct: 458 VLDVCCGTGTIGISLAKRVKKVIGIELCQEAVKDAEANAKANGLTNVEFHCGKAEDVFPT 517

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS-- 327
           +      N +   ++      T  VDPPR+GL    +  ++   H   ++Y++CN  +  
Sbjct: 518 I-----LNAVVSPNV------TAIVDPPRAGLHSKVILAIRKAEHLKRLVYVACNAKAAM 566

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                LCR  S  +        +    D FP T H E  +L  R
Sbjct: 567 NNFIDLCRAPSNRVRGAAFRPVKAMAVDLFPQTMHCETILLFER 610


>gi|296235980|ref|XP_002763130.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 1
           [Callithrix jacchus]
          Length = 504

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 28/205 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA+H  +V
Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELAGVNSDTILLDICCGTGVIGLSLAQHTSQV 369

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 370 LGIELVEQAVEDARWTAAYNGITNSEFHTGRAEKILPGLLKSKE-------DGQSI---V 419

Query: 295 IFVDPPRSGLDDATVGMV---QAYPHILYISC--------NPDSLCRDLS----ILSTTH 339
             V+P R+GL    V  +   +A   ++++SC        N   LC   +    +L    
Sbjct: 420 AVVNPARAGLHYKVVQAIRNCRAIRRLVFVSCKLHGETTRNVIELCCPPNPAKKLLGEPF 479

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +++    D FP+T H E  +L  R
Sbjct: 480 LLQQAVPVDLFPHTPHCELVLLFSR 504


>gi|226355286|ref|YP_002785026.1| (Uracil-5)-methyltransferase [Deinococcus deserti VCD115]
 gi|226317276|gb|ACO45272.1| putative (Uracil-5)-methyltransferase [Deinococcus deserti VCD115]
          Length = 410

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 24/184 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N       L ++ AA    +GD  ++LY G+G     LA  F +V  ++ A  +
Sbjct: 247 TGFAQVNP--QAAGLAYLRAAQLAGEGDHAVDLYGGSGAIGRHLASAFRKVTVLDSAPEA 304

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   R ++A +  +NV             + R  +  R  ++         I VDPPR+G
Sbjct: 305 LSRGRQDVAVSGEHNV-------------VYRSGDAARFSELGT-----DVIVVDPPRAG 346

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           LD+     + A     ++Y+SC+P +  RD+  +L     +  +   D +P T H+E   
Sbjct: 347 LDEEAREQIHASTADRLVYVSCDPATWARDVGDLLRRGWKLGEVTPHDFYPQTSHVEIVS 406

Query: 361 LLVR 364
           +L R
Sbjct: 407 VLNR 410


>gi|83950748|ref|ZP_00959481.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius
           nubinhibens ISM]
 gi|83838647|gb|EAP77943.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius
           nubinhibens ISM]
          Length = 410

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q        ++  V AA  G  G +++L+ G G FS  LA    +V AVE A+  +
Sbjct: 239 GAFLQATREGEAALVADVRAALAGA-GKVVDLFAGCGTFSFPLA-ETAQVHAVEGARDMI 296

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +A +         NV+ +R  + E     R       L++ D        + +DPPR+G 
Sbjct: 297 DALQAGW-----RNVQGLRTMTAEVRDLFRDPLRAEELREYD-------GVCLDPPRAGA 344

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
           +     + Q+    I Y+SC+P S  RD   +L+  + +  + + DQF ++ H+E
Sbjct: 345 EAQVRELAQSDVARIAYVSCSPASFARDARHLLAAGYEMGPVRVVDQFRWSSHVE 399


>gi|229816581|ref|ZP_04446880.1| hypothetical protein COLINT_03639 [Collinsella intestinalis DSM
           13280]
 gi|229807916|gb|EEP43719.1| hypothetical protein COLINT_03639 [Collinsella intestinalis DSM
           13280]
          Length = 421

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 30/167 (17%)

Query: 213 LLELYCGNGNFSLVLA-----RHFDRVL-AVEIAKPSVEAARYNIAANHVNNVK--IVRM 264
           +L+ YCG+G   L  A     + FD  L  VE     V  A  N   N ++     I R 
Sbjct: 271 VLDTYCGSGTIGLAAAAAARKQGFDIALTGVERNPEGVRDAVRNAELNDLDATSSFIARD 330

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-----LDDATVGMVQAYPHIL 319
           +++   +A       +R   +D+       + +DPPR+G     LD A+     A   I+
Sbjct: 331 ATEYMLEAA------HRGDHVDV-------LVMDPPRAGSTPEFLDAASS---LAPRRIV 374

Query: 320 YISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           YISCNP +  RDL  L  T + +ERL   D FP+T H+E   +L R 
Sbjct: 375 YISCNPHTQVRDLEHLGRTGYRLERLTPVDLFPHTEHVETVAILTRP 421


>gi|255282151|ref|ZP_05346706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
 gi|255267099|gb|EET60304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
          Length = 533

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 26/222 (11%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +  + ++++T I   +D+  E L      L ++    SF Q N+ +   +L  
Sbjct: 317 LHTVNDSLADVIKSDRTDILYGKDFFYEELL----GLRFKISPFSFFQTNS-LGAEVLYD 371

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
              +  G   D  + +LY G G  + +LA    +V+ VEI + +V AA+ N AAN ++N 
Sbjct: 372 RARSYVGETKDKTIFDLYSGTGTIAQILAPVARKVVGVEIVEEAVAAAKENAAANGLDNC 431

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---P 316
                   EF          + LK ID    +   I +DPPR G+    +  + A+    
Sbjct: 432 --------EFLAG-------DVLKVIDSVEEKPDIIVLDPPRDGIHPKALEKIGAHIRAK 476

Query: 317 HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
            ++YISC P SL RDL+ L    + ++R+   D FP + H+E
Sbjct: 477 RMIYISCKPTSLARDLAELQKYGYQVDRVCCVDMFPGSVHVE 518


>gi|188584015|ref|YP_001927460.1| (Uracil-5)-methyltransferase [Methylobacterium populi BJ001]
 gi|179347513|gb|ACB82925.1| (Uracil-5)-methyltransferase [Methylobacterium populi BJ001]
          Length = 437

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 17/159 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG+G F+L LA     V A E    ++ A    +   +       R+++ E     R
Sbjct: 284 DLFCGSGPFALALAAGGREVHAAEGEAAAITA----LTRAYRAGAGYARITA-EARDLFR 338

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R      L  +D        +  DPPR+G +     + ++  P ++ ++C+P +  RD +
Sbjct: 339 RPLLGPELDALD-------AVVFDPPRAGAEAQARRIAESKVPLVVGVACDPGTFARDAA 391

Query: 334 ILST-THTIERLALFDQFPYTRHME-CGVL--LVRKPSG 368
            L T  + +ER+   DQF ++ H+E  GV     RKP+G
Sbjct: 392 TLITGGYRLERVTPVDQFAWSAHVELVGVFRKAARKPAG 430


>gi|119385304|ref|YP_916360.1| (Uracil-5)-methyltransferase [Paracoccus denitrificans PD1222]
 gi|119375071|gb|ABL70664.1| 23S rRNA m(5)U-1939 methyltransferase [Paracoccus denitrificans
           PD1222]
          Length = 406

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 16/149 (10%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G +L+L+ G G FSL LA   + V AVE     ++A   + AA     ++ +   + E  
Sbjct: 264 GRMLDLFAGCGTFSLPLAETAE-VHAVEGLAAPLQA--LDAAARQAQGLRRI---TTEIR 317

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLC 329
              RR    + L         +  I +DPPR+G +     + QA  P + ++SC+P +  
Sbjct: 318 DLARRPLMPDELA--------YDAIVIDPPRAGAEAQAREIAQAQVPTLAWVSCDPVTFA 369

Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHME 357
           RD  IL+   + + +L + DQF ++ H+E
Sbjct: 370 RDARILAENGYRLCQLFVVDQFRWSPHVE 398


>gi|315634838|ref|ZP_07890120.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter segnis
           ATCC 33393]
 gi|315476390|gb|EFU67140.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter segnis
           ATCC 33393]
          Length = 391

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 295 IFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+  +    + +  PH ILY SCN +++ +DL  L T + +E++ LFD FP+
Sbjct: 319 VIVNPPRRGIGQSLAEFLNEMRPHFILYSSCNAETMGKDLQSL-THYQMEKIQLFDMFPH 377

Query: 353 TRHMECGVLLVRKP 366
           T H E  VLL   P
Sbjct: 378 TSHYEVLVLLRLTP 391


>gi|320093829|ref|ZP_08025674.1| hypothetical protein HMPREF9005_0286 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979262|gb|EFW10760.1| hypothetical protein HMPREF9005_0286 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 445

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 19/201 (9%)

Query: 171 LTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
           + + G   +Y      F Q +  G  V   E + AA     G +LELY G G F+  LAR
Sbjct: 256 VEIGGEEHVYGVRPTGFWQTHVRGAQVLTEEVLDAARAETGGAVLELYSGAGLFTAPLAR 315

Query: 230 ---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
                 R+ ++E  + +V  A  N+A        I  + +    +         R  D+ 
Sbjct: 316 AVGEGGRLASLEGDEGAVADAAENLAPFPWAQTFIGGIDAHGVAELAG---GLGRAPDV- 371

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT-HTIER 343
                   +  DPPR+G        + A   P ++ +SC+P +  RDL  L+   + +E 
Sbjct: 372 --------VVADPPRAGAGRQVCEAMAALGAPRLVLVSCDPAAGARDLRALAGAGYRLES 423

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           L  +D FP+T H+E    L R
Sbjct: 424 LRAWDLFPHTHHVEIVAALTR 444


>gi|296235982|ref|XP_002763131.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 2
           [Callithrix jacchus]
          Length = 459

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 28/205 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA+H  +V
Sbjct: 266 SLKIRISPDAFFQINTA-GAEMLYRTVGELAGVNSDTILLDICCGTGVIGLSLAQHTSQV 324

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 325 LGIELVEQAVEDARWTAAYNGITNSEFHTGRAEKILPGLLKSKE-------DGQSI---V 374

Query: 295 IFVDPPRSGLDDATVGMV---QAYPHILYISC--------NPDSLCRDLS----ILSTTH 339
             V+P R+GL    V  +   +A   ++++SC        N   LC   +    +L    
Sbjct: 375 AVVNPARAGLHYKVVQAIRNCRAIRRLVFVSCKLHGETTRNVIELCCPPNPAKKLLGEPF 434

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +++    D FP+T H E  +L  R
Sbjct: 435 LLQQAVPVDLFPHTPHCELVLLFSR 459


>gi|260460312|ref|ZP_05808564.1| (Uracil-5)-methyltransferase [Mesorhizobium opportunistum WSM2075]
 gi|259033957|gb|EEW35216.1| (Uracil-5)-methyltransferase [Mesorhizobium opportunistum WSM2075]
          Length = 411

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 16/154 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G G+F+L LA   + V AVE    ++ A   +  +    ++K V    ++     R
Sbjct: 268 DLFAGCGSFALRLAAKSE-VHAVEGDAAALSA--LDRGSRFATSLKRVTGERRDL---FR 321

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R   F  L         F  +  DPPR+G +D +  + ++   ++  +SCNP +L RDL 
Sbjct: 322 RPLTFKELN-------AFDGLVFDPPRAGAEDQSKQIARSDVAYVAAVSCNPVTLARDLR 374

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           IL    +T++ +   DQF ++ H+E  V L+ KP
Sbjct: 375 ILIDGGYTLKSVTPIDQFLWSPHVE-AVALLEKP 407


>gi|254471699|ref|ZP_05085100.1| putative RNA methyltransferase [Pseudovibrio sp. JE062]
 gi|211958901|gb|EEA94100.1| putative RNA methyltransferase [Pseudovibrio sp. JE062]
          Length = 421

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 33/214 (15%)

Query: 170 RLTVAGRTLIYRQIENSFTQ-PNAGINVHMLEWVLAA--TKGIQGDLL-----------E 215
           RLTV G T+I  +I         A + +    ++ AA   +   GDLL           +
Sbjct: 220 RLTVDGETII--EIRPPLLDMSGAAVPIPAGGFIQAALSAENTMGDLLAEGLKGCKRVAD 277

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           L+CG G  +  +   F  V AVE    S++A    +       +K V    ++       
Sbjct: 278 LFCGAGTLTFKIG-QFANVHAVEGEASSLKALDQGL--RRAKGLKKVTTERRDL------ 328

Query: 276 EREFNR---LKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHILYISCNPDSLCRD 331
              F R    K++D     +  +  DPPR+G L  A          I+ +SC+P S  RD
Sbjct: 329 ---FRRPIVAKELDNFGKGYDGVVFDPPRAGALAQAQELAKSPVKKIVAVSCSPASFVRD 385

Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  +L   + I+R+   DQF Y+ H+E   LL R
Sbjct: 386 MRELLDGGYEIKRVVPIDQFLYSPHVEVVALLER 419


>gi|90019775|ref|YP_525602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharophagus
           degradans 2-40]
 gi|89949375|gb|ABD79390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharophagus
           degradans 2-40]
          Length = 408

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 22/178 (12%)

Query: 187 FTQPNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPS 243
           F Q N+  N  M +W+    A   +    +EL+CG+GNF+ V+ A  F  V AVE+   +
Sbjct: 236 FMQANSSQNKLMQDWLAERLARVDLANPAIELFCGSGNFTEVIAAAGFPAVAAVEVEGDA 295

Query: 244 VEAARYNIAAN-HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           + A +     N  V+ + +      E           N LK       + KT+ +DPPR 
Sbjct: 296 LSALQAKALTNVSVHGINLYEEGGLE-----------NALKT----QPKAKTLVLDPPRD 340

Query: 303 GLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
           GL +    + ++     ILYISC+  +  RD++ +    + +  +   DQFP+T H+E
Sbjct: 341 GLKERAALLKKSCKIRDILYISCDLATFTRDITDLCGAGYKLVAVQPVDQFPHTPHVE 398


>gi|170781047|ref|YP_001709379.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155615|emb|CAQ00732.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 441

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 27/167 (16%)

Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIA-----ANHVNNV-KIVRM 264
           L+LY G G  +  +   F    R+ +VE  + + E A  N+A     A+  + V + ++ 
Sbjct: 289 LDLYGGVGLLAAAVGDRFGDTTRITSVESDEVATEFAGDNLAEWVGAASLTSRVDRYLQQ 348

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYIS 322
            ++E T A RR     RL+          T+ +DPPR+G     V  + + +P  ++Y++
Sbjct: 349 LAREATPAERR-----RLQG--------ATVVLDPPRAGAKKPVVDALAELHPAQVVYVA 395

Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           C+P +L RD+++ +   + +  +  +D FP+T H+E   +LV  P+G
Sbjct: 396 CDPVALARDVALFAERGYELRSVRSYDLFPHTHHVESVAVLV--PAG 440


>gi|311276624|ref|XP_003135289.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Sus scrofa]
          Length = 657

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 28/204 (13%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235
           L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA++  +VL
Sbjct: 465 LKIRISPDAFFQINTA-GAEMLYRTVGELSGVNSDTILLDICCGTGVIGLSLAQYTSQVL 523

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E+ + +VE AR+  A N + N +     +++    + + +E            +F   
Sbjct: 524 GIELVEQAVEDARWTAAFNGITNCEFHTGRAEKILPQLLKSKE----------DGQFIVA 573

Query: 296 FVDPPRSGLDDATVGMV---QAYPHILYISCNPDS---------LCRDLS---ILSTTHT 340
            V+P R+GL    V  +   +A   ++++SC P            C   S   +L     
Sbjct: 574 VVNPARAGLHYQVVQAIRNCRAIRTLVFVSCKPHGETTRNIIELCCPSNSAKKLLGEPFV 633

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           + +    D FP+T H E  +L  R
Sbjct: 634 LRQAVPVDLFPHTPHCELVLLFTR 657


>gi|167957196|ref|ZP_02544270.1| RNA methyltransferase, TrmA family protein [candidate division TM7
           single-cell isolate TM7c]
          Length = 130

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 295 IFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + VDPPR+GL    V   +    P I+Y+SCNP +  RD+S+L   + I     ++ FP 
Sbjct: 56  VIVDPPRAGLHADVVRRLLETTPPRIIYLSCNPVTQARDVSLLQEKYEITHHQGYNFFPR 115

Query: 353 TRHMECGVLLVRK 365
           T H+E  V+L RK
Sbjct: 116 TPHIEHLVILDRK 128


>gi|30249809|ref|NP_841879.1| SAM-binding motif-containing protein [Nitrosomonas europaea ATCC
           19718]
 gi|50401755|sp|Q82TM7|Y1857_NITEU RecName: Full=Uncharacterized RNA methyltransferase NE1857
 gi|30180846|emb|CAD85768.1| SAM (and some other nucleotide) binding motif [Nitrosomonas
           europaea ATCC 19718]
          Length = 393

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 22/181 (12%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATK--GIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIA 240
           +  F Q N   N  M  W+  A +  G    ++EL+CG+GNF+ V+A+     +LA E  
Sbjct: 210 KQPFRQGNDAQNQWMRSWLKYALEQHGHSHKIVELFCGSGNFTEVIAQTGCPEILAYEAD 269

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++   R         N+  V   + +       +     ++D  I       + +DPP
Sbjct: 270 PQAITVLRQK-------NLPGVDARTADLYHPFIWKILKKNVQDAGI-------LVLDPP 315

Query: 301 RSGLDDATVGMVQAYPH---ILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHM 356
           RSGL     G   A+     I YISC+P +  RD  I          + L D FP+T H+
Sbjct: 316 RSGLK-TLRGFFDAFAALETICYISCDPVTFARDAWIFCKNGWKFTDIQLIDLFPHTPHI 374

Query: 357 E 357
           E
Sbjct: 375 E 375


>gi|251791917|ref|YP_003006637.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533304|gb|ACS96550.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 391

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 295 IFVDPPRSGLDDA-TVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+  A +  + +  PH ILY SCN +++ +DL  L T + + ++ LFD FP+
Sbjct: 319 VIVNPPRRGIGKALSEYLNEMQPHFILYSSCNAETMSKDLQSL-THYQLGKIQLFDMFPH 377

Query: 353 TRHMECGVLLVRK 365
           T H E  VLL R+
Sbjct: 378 TSHYEVLVLLKRR 390


>gi|261868606|ref|YP_003256528.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413938|gb|ACX83309.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 165

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 295 IFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           I V+PPR G+       + A  PH ILY SCN +++ +DL  L T +  E++ LFD FP+
Sbjct: 93  IIVNPPRRGVGKTLAEFLNAMQPHFILYSSCNAETMGKDLQSL-THYQSEKIQLFDMFPH 151

Query: 353 TRHMECGVLL 362
           T H E  VLL
Sbjct: 152 TAHYEVLVLL 161


>gi|198433704|ref|XP_002130635.1| PREDICTED: similar to HpaII tiny fragments locus 9c [Ciona
           intestinalis]
          Length = 587

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 22/165 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQ 271
           LL++ CG G   L L+   +R++ V+I + ++  A  N   N++ N +  V  +     +
Sbjct: 427 LLDVCCGTGTIGLTLSSCVNRLVGVDICEQAIIDAVKNATLNNITNAEFYVGKAEDVLPK 486

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPD-- 326
           A+      N +  + +         VDPPR GL    + +++  P   +++Y+SC+ D  
Sbjct: 487 AIESLSGINSMNLVAV---------VDPPRCGLHAKVIKVIRQCPAIQYLIYVSCSVDQA 537

Query: 327 -----SLCRDLSI-LSTTHTIERLA-LFDQFPYTRHMECGVLLVR 364
                 LCR  S  L+       LA   D FP+T+H E  +L  R
Sbjct: 538 KTNFVDLCRPQSKRLNGPPFKPMLAQPVDLFPHTKHCEVVLLFKR 582


>gi|297260579|ref|XP_002798309.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
           [Macaca mulatta]
          Length = 566

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 70/170 (41%), Gaps = 39/170 (22%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G   L LAR   RV+ VE+   +VE AR N   N     +  R++S+     
Sbjct: 392 VLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNGEWQGR-GRLASQHL--- 447

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-- 327
                                   +DPPR+GL    +  ++   +I   LY+SCNP +  
Sbjct: 448 ---------------------VAILDPPRAGLHSKVILAIRRAENIRRLLYVSCNPRAAM 486

Query: 328 -----LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL--VRKPSG 368
                LCR  S  +  T     +    D FP T H E  +L   V  P+G
Sbjct: 487 GNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTPHCEMLILFERVEHPNG 536


>gi|158316945|ref|YP_001509453.1| deoxyribonuclease [Frankia sp. EAN1pec]
 gi|158112350|gb|ABW14547.1| deoxyribonuclease/rho motif-related TRAM [Frankia sp. EAN1pec]
          Length = 517

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 77/176 (43%), Gaps = 28/176 (15%)

Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LYCG G F+  LA       RV+A+E    S EAA    AA  + ++  V + S   T
Sbjct: 330 LDLYCGAGLFAAFLAEAVGPTGRVIALE----SDEAA-VRSAARSLADLPWVSLRSLRVT 384

Query: 271 QAMRR------------EREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAYPH 317
            A  R                         + R   + V DPPR+G       M +   H
Sbjct: 385 PATVRGLVGAADQPAAPADGLPAGGATPGPARRAVDVAVLDPPRTGTGREV--MTELLAH 442

Query: 318 ----ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
               ++Y++C+P +L RD+++ +   + +  L  FD FP T H+EC   L   P+G
Sbjct: 443 RPRRVVYVACDPAALARDVAVAAGEGYRLTELRAFDLFPMTSHVECVATLEPAPAG 498


>gi|148557553|ref|YP_001265135.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sphingomonas wittichii
           RW1]
 gi|148502743|gb|ABQ70997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sphingomonas wittichii
           RW1]
          Length = 405

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 21/162 (12%)

Query: 202 VLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +LA  + I GD   + +L+ G G FSL LAR   RV A E A+ +V      + A    +
Sbjct: 252 LLAEVEAIVGDARLVADLFAGLGTFSLPLART-RRVYAAEGARDAV----LGLKAAADRS 306

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYP 316
            +++ +  ++     RR  +   L        RF  + +DPPR+G  +    +       
Sbjct: 307 QRMIGIDHRDL---FRRPLDAAELD-------RFDVVVLDPPRAGAREQMPALAATTKVR 356

Query: 317 HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
            I Y+SCNP +  RD  +++     +ER+    QF ++ H E
Sbjct: 357 RIAYVSCNPSTFGRDARTLVEGGWRLERITPVGQFRWSTHTE 398


>gi|256825396|ref|YP_003149356.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Kytococcus sedentarius DSM 20547]
 gi|256688789|gb|ACV06591.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Kytococcus sedentarius DSM 20547]
          Length = 401

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 20/149 (13%)

Query: 215 ELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+ G+G F++ LA        VLAVE ++P+V+A    +  +  + V    +   +  +
Sbjct: 257 DLFSGSGAFTVPLALAVGATGEVLAVEGSEPAVDACAAALEEHAPHTVA--DLVVGDVAE 314

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329
            + R      L            + +DPPR+G   A V  V A     I Y++C+P +L 
Sbjct: 315 TLARWEGGTDL------------VVLDPPRTGAGPAVVEAVAASGASRIAYVACDPAALG 362

Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHME 357
           RDL         +ER+  FD F  T H+E
Sbjct: 363 RDLGHARQAGLEVERVVGFDAFGTTHHLE 391


>gi|116250743|ref|YP_766581.1| 23S rRNA (uracil-5-)-methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255391|emb|CAK06466.1| putative 23S rRNA (uracil-5-)-methyltransferase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 416

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             FTQ        M E V+A   G    + +L+ G+G FSL LAR   RV AVE    ++
Sbjct: 249 GGFTQATKPAEEAMAELVMAHA-GKAKRIADLFAGSGTFSLRLAR-IGRVHAVEAEAKAL 306

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  +  AA +   +K V +  ++     RR       K  D        +  DPPR+G 
Sbjct: 307 AALDH--AARNTQGLKPVTVEKRDL---FRRPLMTQEFKPYD-------AVVFDPPRAGA 354

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +     + + A   I+ +SCNP +L RDL+IL    + I ++   DQF +T H+E
Sbjct: 355 EFQCQELARSAVKKIVAVSCNPLTLARDLAILVEGGYRITQVTPIDQFLWTSHVE 409


>gi|330889401|gb|EGH22062.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 120

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 16/129 (12%)

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           VE     VE A  N  +N ++NV+  +   S+  T A             D  +  F  +
Sbjct: 1   VEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHA-------------DWAAEGFSAV 47

Query: 296 FVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYT 353
            +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D FP T
Sbjct: 48  LLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQT 107

Query: 354 RHMECGVLL 362
            H+E   L 
Sbjct: 108 AHVEAMALF 116


>gi|300781039|ref|ZP_07090893.1| SAM-dependent methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300532746|gb|EFK53807.1| SAM-dependent methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 416

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 33/211 (15%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPN----AGINVHMLEWVLAATKGIQGDLLELYCGN 220
           D   E + VAG    +     +F Q +    A  + ++L+W  AA    +    +LY G 
Sbjct: 225 DAATEIVPVAGEEFHFSFPPTAFWQAHLAAPAAYSAYILDW--AADDYGERTGWDLYGGV 282

Query: 221 GNF--SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR--- 275
           G F  S+  A   D+        P + +  Y+ AA       +       F   MR    
Sbjct: 283 GLFVPSISAAMEGDQA-------PRIVSVDYSPAATRTPQPAL-----SAFNVDMRNQKV 330

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS 333
           E   + L D  +       + +DPPR+G  +  V G+    P  ++++ C+P +  RDL+
Sbjct: 331 EAALDELPDPGL-------VVLDPPRTGAGENVVAGIAARRPQRVIHVGCDPATFTRDLA 383

Query: 334 ILSTT-HTIERLALFDQFPYTRHMECGVLLV 363
                 + +ER+AL D FP T H E    LV
Sbjct: 384 TWGAAGYVVERMALIDAFPATHHFEVLTSLV 414


>gi|330796726|ref|XP_003286416.1| hypothetical protein DICPUDRAFT_94161 [Dictyostelium purpureum]
 gi|325083611|gb|EGC37059.1| hypothetical protein DICPUDRAFT_94161 [Dictyostelium purpureum]
          Length = 645

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 45/229 (19%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN----VHMLEWVLAATKGIQGD- 212
           T+  +  +Y+ E+L   G T  +R   N+F Q N          +LEW      G+  + 
Sbjct: 377 TETIMGPNYIHEKL--LGYT--FRVSPNAFFQVNTKATELLYSKVLEWA-----GVSENT 427

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            LL++ CG G      ++    +  +EI+  ++  +  N   N++ N +     +++   
Sbjct: 428 HLLDVCCGTGTIGQCASKKVKCITGLEISPDAITDSISNAQLNNITNAEYTLGKAEDTLP 487

Query: 272 AM----RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCN 324
           +M     ++ EF     I I         VDPPRSGL +  +  ++++     ++Y+SCN
Sbjct: 488 SMLTKFSKDEEF-----IGI---------VDPPRSGLHNDVLKAIRSFEPMKKLVYVSCN 533

Query: 325 PDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             S       LC+ +S  +  T     +   FD FP+T  +E  VL  R
Sbjct: 534 QKSLVQDSIKLCKGISKAMKGTPFIPTKAIAFDLFPHTDLVELVVLFER 582


>gi|264679193|ref|YP_003279100.1| RNA methyltransferase, TrmA family [Comamonas testosteroni CNB-2]
 gi|262209706|gb|ACY33804.1| RNA methyltransferase, TrmA family [Comamonas testosteroni CNB-2]
          Length = 519

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 42/226 (18%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     
Sbjct: 299 GITMPFKPTD--FTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFTLPIATMARE 356

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL +E ++  V+ +  N AAN+V   +  +++S  F         F     + I      
Sbjct: 357 VLGIEGSETLVKRSHENYAANNVTRSEDDKLASTSFVA----RNLFEMTPAMLIADGNSD 412

Query: 294 TIFVDPPRSG----------LDDATVGMVQA----------------------YPH-ILY 320
              VDPPR G          +    +G  Q                       +P  I+Y
Sbjct: 413 KWLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFPKRIVY 472

Query: 321 ISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +SCNP +L RD  +L     +      + + FP+T H+E   +  R
Sbjct: 473 VSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 518


>gi|167772924|ref|ZP_02444977.1| hypothetical protein ANACOL_04312 [Anaerotruncus colihominis DSM
           17241]
 gi|167664857|gb|EDS08987.1| hypothetical protein ANACOL_04312 [Anaerotruncus colihominis DSM
           17241]
          Length = 472

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 80/184 (43%), Gaps = 18/184 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SF Q N+     +L  V A    + G   LL+LYCG G   L LA    +V+ VE+   +
Sbjct: 298 SFYQVNS-PGAELLYGVAAEFAALTGTETLLDLYCGAGTIGLSLAHLCRQVIGVEVVPQA 356

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A  N A N + N +     + +    + RE              R   I +DPPR G
Sbjct: 357 VENAVANAARNGIKNARFFCADAGQAAARLARE------------GVRPDVIVLDPPRKG 404

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGV 360
                +  V A     ++ +SC+  ++ RD + L+   ++  R    D FP T H+E   
Sbjct: 405 CAPEVLDAVAAMAPRRVVMVSCDSATMARDCAALAAAGYSPRRCRPVDMFPRTAHVEAVA 464

Query: 361 LLVR 364
           +L R
Sbjct: 465 VLSR 468


>gi|313104036|sp|A4QP75|TRM2B_DANRE RecName: Full=tRNA (uracil-5-)-methyltransferase homolog-B;
           AltName: Full=TRM2 homolog B
 gi|220676971|emb|CAX12082.1| novel protein (zgc:162982) [Danio rerio]
          Length = 480

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 34/207 (16%)

Query: 175 GRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSL 225
           G+T IY ++         +SF Q N      + + V   ++  + G LL++ CG G   +
Sbjct: 277 GQTHIYEEVLGFKFRISPDSFFQVNREAAEALYKTVAELSQPCVGGTLLDVCCGTGAIGI 336

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            L+   +RV+ +E+ + +VE A++N A N V N + +         A + E     L   
Sbjct: 337 SLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCEFL---------AGKAEVVLPDLMG- 386

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS--------LCRDLSI 334
            + S    T  V+P R+GL    V  ++ +  I   +YISC PD         LC  + +
Sbjct: 387 SLSSDGGLTAVVNPSRAGLHYRVVRALRNHSAIRRLVYISCKPDGEAMRNFRELCCSVGL 446

Query: 335 LS--TTHTIERLAL--FDQFPYTRHME 357
           +   T    + +     D FP+T H E
Sbjct: 447 VRRITGEAFKPVVAVPVDLFPHTPHCE 473


>gi|149918280|ref|ZP_01906771.1| RNA methyltransferase [Plesiocystis pacifica SIR-1]
 gi|149820806|gb|EDM80215.1| RNA methyltransferase [Plesiocystis pacifica SIR-1]
          Length = 485

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 25/146 (17%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LY G G  + +L R F  V   E               +H  +   + + ++   Q +
Sbjct: 349 LDLYAGAGVTTGLLRRRFAEVRPCE---------------SHPESAAALGVPAQTAEQFL 393

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331
               E NR             +  +PPR+GL +A    + +   P +  +SCNPD+L  D
Sbjct: 394 ATRLEGNRPPPA--------LVIANPPRAGLGEAVCAQLLSLDAPRLHIMSCNPDTLAAD 445

Query: 332 LSILSTTHTIERLALFDQFPYTRHME 357
           L  L+  + ++ L  +D  P T H+E
Sbjct: 446 LDRLAPGYVLDTLRAYDTLPQTPHVE 471


>gi|302327029|gb|ADL26230.1| putative RNA methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 445

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 23/196 (11%)

Query: 181 RQIE---NSFTQPNAGINVHMLEWV-------LAATKGIQGDLLELYCGNGNFSLVLARH 230
           R+IE   + F Q N G+   ++E V       LA+ K     L++L+ G G F+ +L   
Sbjct: 247 RKIEADASVFFQSNLGLLPELVESVRKAVDEGLASGKSSDAWLIDLFSGVGFFACILQDK 306

Query: 231 FDRVLAVEIAKPSVEAARYNIAA------NHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           F ++  VE  +  ++ A+ N++       +   +   V   + E         ++     
Sbjct: 307 FRKITTVEREEGCLKHAKVNLSVPAAFPEDSAASRDCVASRTSEIENVSAPAEDWLVENV 366

Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTH-TI 341
           +D+ +    T+ VDPPR+GL  +A   +V++  + ++Y+SC+P +L RD +  S     +
Sbjct: 367 VDVPA----TLIVDPPRTGLPKEALTAIVKSSVNRLIYVSCDPVTLARDFAKFSEAGFAL 422

Query: 342 ERLALFDQFPYTRHME 357
                F  +P T H+E
Sbjct: 423 SHAEGFAFYPQTPHLE 438


>gi|326316746|ref|YP_004234418.1| TrmA family RNA methyltransferase [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373582|gb|ADX45851.1| RNA methyltransferase, TrmA family [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 490

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 88/215 (40%), Gaps = 31/215 (14%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L      + D +++ +CG GNF+L +A     
Sbjct: 281 GITMPFKPTD--FTQVNPHINRVLVTRALRLLDAGRADRVIDWFCGLGNFTLPIATQARE 338

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E ++  V  +R N   N  +  +   ++   F         F    ++ I      
Sbjct: 339 VVGIEGSEALVARSRENYRKNQDDRPQGQALAPTTFVA----RNLFEMTPEMLIADGVAD 394

Query: 294 TIFVDPPRSG----------LDDATVGM--VQAYP----------HILYISCNPDSLCRD 331
              VDPPR G          +  A +G     A P           I+Y+SCNP +L RD
Sbjct: 395 KWLVDPPREGAFALAKALADIHQARIGTEDAPALPASAEGWTPPQRIVYVSCNPATLARD 454

Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +L     +      + + FP+T H+E   +  R
Sbjct: 455 AGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 489


>gi|171545987|ref|NP_001116415.1| tRNA (uracil-5-)-methyltransferase homolog-B [Danio rerio]
 gi|141795408|gb|AAI39683.1| Zgc:162982 protein [Danio rerio]
          Length = 473

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 34/207 (16%)

Query: 175 GRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSL 225
           G+T IY ++         +SF Q N      + + V   ++  + G LL++ CG G   +
Sbjct: 270 GQTHIYEEVLGFKFRISPDSFFQVNREAAEALYKTVAELSQPCVGGTLLDVCCGTGAIGI 329

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            L+   +RV+ +E+ + +VE A++N A N V N + +         A + E     L   
Sbjct: 330 SLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCEFL---------AGKAEVVLPDLMG- 379

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS--------LCRDLSI 334
            + S    T  V+P R+GL    V  ++ +  I   +YISC PD         LC  + +
Sbjct: 380 SLSSDGGLTAVVNPSRAGLHYRVVRALRNHSAIRRLVYISCKPDGEAMRNFRELCCSVGL 439

Query: 335 LS--TTHTIERLAL--FDQFPYTRHME 357
           +   T    + +     D FP+T H E
Sbjct: 440 VRRITGEAFKPVVAVPVDLFPHTPHCE 466


>gi|91978768|ref|YP_571427.1| RNA methyltransferase [Rhodopseudomonas palustris BisB5]
 gi|91685224|gb|ABE41526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas
           palustris BisB5]
          Length = 412

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 16/152 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L LA    RV A +   P+V A     AA   + +K ++   ++    
Sbjct: 272 IADLFCGVGPFALRLAAKA-RVFACDSDAPAVNA--LQKAAQATSGLKPIKAEPRDL--- 325

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            RR      L D D+       +  DPPR G       +  +  P I+ +SCN  +  RD
Sbjct: 326 FRRPLAPPELLDFDV-------VLFDPPRQGAQAQAAQLAASRVPLIIAVSCNAQTFARD 378

Query: 332 LSIL-STTHTIERLALFDQFPYTRHME-CGVL 361
             +L    + +E++   DQF +T H+E  GVL
Sbjct: 379 ARLLIDGGYRLEKVTPVDQFRHTPHVELVGVL 410


>gi|164656170|ref|XP_001729213.1| hypothetical protein MGL_3680 [Malassezia globosa CBS 7966]
 gi|159103103|gb|EDP41999.1| hypothetical protein MGL_3680 [Malassezia globosa CBS 7966]
          Length = 411

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--DERLTVAGRT--LIYR 181
           +L++A      R+RD++ + K    L+ R +      D   V  D + TV  R     + 
Sbjct: 248 VLNEAMTHERQRVRDSIRSYKNGATLLLRDSLCSADSDASTVVTDHKATVHERVGGTTFS 307

Query: 182 QIENSFTQPNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
               +F Q N  I   ++++V +   +K     L++ YCG+G F++ LA  FD+V  VEI
Sbjct: 308 TPAGAFFQNNRSIIPLVMDYVKSQLPSKSSPQYLVDTYCGSGLFAICLAPLFDQVAGVEI 367

Query: 240 AKPSVEAARYNIAANHVNNV 259
           +  S+E A+ N   N+V N 
Sbjct: 368 STSSIECAKANAKQNNVQNA 387


>gi|75674829|ref|YP_317250.1| putative RNA methyltransferase [Nitrobacter winogradskyi Nb-255]
 gi|74419699|gb|ABA03898.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrobacter winogradskyi
           Nb-255]
          Length = 422

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 15/155 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+CG G F+L LA     V A +    +V A     AA+  + +K ++  S++    
Sbjct: 280 IVDLFCGVGPFALRLAMRAP-VAAFDSNAAAVTA--LQKAADTASRLKPIKAESRDL--- 333

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            RR      L+DID        IF DPPR G +  +  +     P I+ +SC+  +  RD
Sbjct: 334 FRRPLMAQELRDID------AAIF-DPPRQGAEAQSKQLAAGRIPVIVAVSCSAATFARD 386

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             IL    +++E +   DQF ++ H+E     VR+
Sbjct: 387 ARILVDGGYSLEAVTPVDQFRHSAHVELVAKFVRR 421


>gi|281357982|ref|ZP_06244467.1| deoxyribonuclease/rho motif-related TRAM [Victivallis vadensis ATCC
           BAA-548]
 gi|281315640|gb|EFA99668.1| deoxyribonuclease/rho motif-related TRAM [Victivallis vadensis ATCC
           BAA-548]
          Length = 399

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 16/149 (10%)

Query: 213 LLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            ++LY G G FS V L      VLAVE  + +  AAR+N+      N +++   + E  +
Sbjct: 256 FIDLYAGVGFFSAVALHAGVREVLAVESDEAAAAAARFNLKNFGAENPEVIAGDAAEALK 315

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQA-YPHILYISCNPDSLC 329
           +++     + L            + VDPPR GL   A + +  +     +YISCNP +  
Sbjct: 316 SLKDAPASDAL------------LTVDPPRGGLTLKAAMALTGSTLDSFIYISCNPATWA 363

Query: 330 RDLSILSTTH-TIERLALFDQFPYTRHME 357
           RD   L+    T+ +L L + FP T H E
Sbjct: 364 RDARRLAKGGFTLNKLRLVNMFPRTEHFE 392


>gi|227495508|ref|ZP_03925824.1| methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831055|gb|EEH63438.1| methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 433

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 21/153 (13%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
           ++EL+ G G F+  L +      R++++E +  +VE AR+N+    V  ++++  +  K 
Sbjct: 286 VIELFSGAGLFTYFLGQAAGAEGRLISIEGSLQAVEDARHNLRGLEVPRDLRVGNVDGKS 345

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHILYISCNP 325
            ++A     E            R + + +DPPR+G        +GM      ++ +SC+P
Sbjct: 346 MSRAWSDLGE------------RPRVVVLDPPRAGAGAELIRVIGM-SGPERVVLVSCDP 392

Query: 326 DSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
            +  RD+   L+  + ++ L   D FP T H+E
Sbjct: 393 AAAARDIKDFLAAGYDLQNLYALDLFPQTHHVE 425


>gi|163745087|ref|ZP_02152447.1| RNA methyltransferase, putative [Oceanibulbus indolifex HEL-45]
 gi|161381905|gb|EDQ06314.1| RNA methyltransferase, putative [Oceanibulbus indolifex HEL-45]
          Length = 407

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 15/157 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+ G G FSL LA+   RV AVE      +A             K  +  + E    
Sbjct: 264 VVDLFAGCGTFSLPLAQKA-RVHAVE-----GDAEMIAALEGGWRRAKGAKPLTTETRDL 317

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            RR    + L  +D        + +DPPR+G +     +++A  P + Y+SC+P S  RD
Sbjct: 318 FRRPLLPDELAKVD-------AVVLDPPRAGAEAQVAEIIRAQVPRLAYVSCSPVSFARD 370

Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +  ++++ + ++ + + DQF ++ H+E    L    S
Sbjct: 371 VQKLVASGYRLDWIQVVDQFRWSSHVELAACLTAPES 407


>gi|85708796|ref|ZP_01039862.1| putative RNA methyltransferase [Erythrobacter sp. NAP1]
 gi|85690330|gb|EAQ30333.1| putative RNA methyltransferase [Erythrobacter sp. NAP1]
          Length = 255

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 19/148 (12%)

Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+ G G F+  LAR      +VLAVE           + +A+        R   +  T 
Sbjct: 115 DLFAGLGTFAFGLARSGPEGRKVLAVEA----------DQSAHLACKASAARSGGRVLT- 163

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330
              R+   N L+  ++   RF  + +DPPR+G       + ++  P  +YISCNP S  R
Sbjct: 164 -THRDLFRNPLQAEELS--RFDGVLLDPPRAGAKAQISQLAKSDCPRTVYISCNPSSWAR 220

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHME 357
           D ++L    + +E L    QF ++ H+E
Sbjct: 221 DAAVLCEAGYQLETLRPVGQFRWSTHVE 248


>gi|302866101|ref|YP_003834738.1| deoxyribonuclease/rho motif-related TRAM [Micromonospora aurantiaca
           ATCC 27029]
 gi|302568960|gb|ADL45162.1| deoxyribonuclease/rho motif-related TRAM [Micromonospora aurantiaca
           ATCC 27029]
          Length = 420

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 89/206 (43%), Gaps = 47/206 (22%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGI-NVHMLEWVLAATKGIQG---DLLELYCGNGNFSL 225
           R T AGR         SFT P +G   VH      AA   + G   DLL+   G   + L
Sbjct: 234 RETAAGR---------SFTLPASGFWQVHP-----AAADALTGAVLDLLDPRPGETAWDL 279

Query: 226 ---------VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
                     LA   D  RV  VE A   V AAR N+A     +++ V + +     A+ 
Sbjct: 280 YGGAGLFAAALAERVDGARVTLVESAPDGVAAARQNLA-----DLRAVEVVAARVEAALS 334

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDL 332
           R R       +D+       + +DPPRSG     V G+V A P  + Y++C+P +  RD+
Sbjct: 335 RRRITG---PVDL-------VVLDPPRSGAGAPVVRGVVAAGPRAVAYVACDPAAFARDV 384

Query: 333 SILSTTH-TIERLALFDQFPYTRHME 357
              +     +  L  FD FP T+H+E
Sbjct: 385 RTFAEAGWRLAALRGFDLFPMTQHVE 410


>gi|226366231|ref|YP_002784014.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226244721|dbj|BAH55069.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 419

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 20/153 (13%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G F+  LA     V +VE A+ +V   +  +A     ++  VR        A R
Sbjct: 284 DLYGGVGVFAAALAGRAGHVDSVESARQAVADGKAALA-----DLPQVRF------HADR 332

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL--YISCNPDSLCRDL 332
            ER    L          + + +DPPR+G     V  V A       ++ C+P S  RD+
Sbjct: 333 VERAIAGLTSPP------RVVVLDPPRAGAGREVVEAVAAAGAERVVHVGCDPASFARDI 386

Query: 333 SI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            + L   + ++ L  FD FP T H+EC  LL R
Sbjct: 387 GLYLGQGYHVDELRAFDAFPLTHHVECIALLTR 419


>gi|259417594|ref|ZP_05741513.1| tRNA (Uracil-5-)-methyltransferase superfamily [Silicibacter sp.
           TrichCH4B]
 gi|259346500|gb|EEW58314.1| tRNA (Uracil-5-)-methyltransferase superfamily [Silicibacter sp.
           TrichCH4B]
          Length = 414

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 11/152 (7%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+ G G FSL LA   + V AVE  +  ++A            +K V   +++    
Sbjct: 269 IVDLFAGAGTFSLPLATGAE-VHAVEGEREMMQALEQGW--RKAQGLKKVTTETRDLF-- 323

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
               R    ++D+      +  + +DPPR+G +     + +A  P I Y+SCNP +  RD
Sbjct: 324 ----RNPLLVEDLRKFGQVYDAVVIDPPRAGAEAQVQELAKAKLPTISYVSCNPITFARD 379

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
             +L S  + +  + + DQF ++ H E    L
Sbjct: 380 AEVLVSAGYRLNWVQVVDQFRWSSHTELAASL 411


>gi|261416610|ref|YP_003250293.1| deoxyribonuclease/rho motif-related TRAM [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373066|gb|ACX75811.1| deoxyribonuclease/rho motif-related TRAM [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 466

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 92/196 (46%), Gaps = 23/196 (11%)

Query: 181 RQIE---NSFTQPNAGINVHMLEWV-------LAATKGIQGDLLELYCGNGNFSLVLARH 230
           R+IE   + F Q N G+   ++E V       LA+ K     L++L+ G G F+ +L   
Sbjct: 268 RKIEADASVFFQSNLGLLPELVESVRKAVDEGLASGKSSDAWLIDLFSGVGFFACILQDK 327

Query: 231 FDRVLAVEIAKPSVEAARYNIAA------NHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           F ++  VE  +  ++ A+ N++       +   +   V   + E         ++     
Sbjct: 328 FRKITTVEREEGCLKHAKVNLSVPAAFPEDSAASRDCVASRTSEIENVSAPAEDWLVENV 387

Query: 285 IDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTH-TI 341
           +D+ +    T+ VDPPR+GL  +A   +V++  + ++Y+SC+P +L RD +  S     +
Sbjct: 388 VDVPA----TLIVDPPRTGLPKEALTAIVKSSVNRLIYVSCDPVTLARDFAKFSEAGFAL 443

Query: 342 ERLALFDQFPYTRHME 357
                F  +P T H+E
Sbjct: 444 SHAEGFAFYPQTPHLE 459


>gi|257067572|ref|YP_003153827.1| 23S rRNA methyluridine methyltransferase [Brachybacterium faecium
           DSM 4810]
 gi|256558390|gb|ACU84237.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Brachybacterium faecium DSM 4810]
          Length = 388

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 26/200 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHM----LEWV--LAATKGIQGD--LLELYCGNGNFSLVLA 228
           TL  R    SF Q N  +   +      W   + A  G +G   + +LYCG G F+L +A
Sbjct: 202 TLFAR--PQSFLQTNTAVAAQLYRQGAAWAREILAQPGAEGAPRVWDLYCGLGGFALHVA 259

Query: 229 RHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           R     RV  VE++  +++ AR    A  + +   +   +  +  A           D+ 
Sbjct: 260 RAVPGARVTGVEVSPQAIDGAREAAEAAGLRSATFLAADATRW--AATEAAGPKGPPDLA 317

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERL 344
           +         V+PPR GL     G ++      +LY SCNP +L  DL+ + +   I   
Sbjct: 318 V---------VNPPRRGLGPELAGWLERSGVADVLYSSCNPATLATDLAAMPSLQ-ITAG 367

Query: 345 ALFDQFPYTRHMECGVLLVR 364
              D FP+T H E  V L R
Sbjct: 368 RYVDMFPHTAHAEVIVRLRR 387


>gi|120611974|ref|YP_971652.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax citrulli
           AAC00-1]
 gi|143580423|sp|A1TSE0|RUMA_ACIAC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120590438|gb|ABM33878.1| 23S rRNA m(5)U-1939 methyltransferase [Acidovorax citrulli AAC00-1]
          Length = 491

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 99/248 (39%), Gaps = 33/248 (13%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLTVAGRTLIYRQIENSFTQPNAGI 194
           RLR    A   Q  L  +   T   LD     ++  L   G T+ ++  +  FTQ N  I
Sbjct: 242 RLRSFAAAHGVQWWLQPKGPDTVHLLDEGGPQLNYALPDFGITMPFKPTD--FTQVNPHI 299

Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           N  ++   L      + D +++ +CG GNF+L +A     V+ +E ++  V  +R N   
Sbjct: 300 NRVLVTRALRLLDAGRTDRVIDWFCGLGNFTLPIATQAREVVGIEGSEALVARSRENYRK 359

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------- 303
           N  +  +   ++   F         F    ++ I         VDPPR G          
Sbjct: 360 NQDDRPQGQALAPATFVA----RNLFEMTPEMLIADGVADKWLVDPPREGAFALAKALAD 415

Query: 304 LDDATVGM--VQAYP----------HILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
           +  A +G     A P           I+Y+SCNP +L RD  +L     +      + + 
Sbjct: 416 IHQARIGAEDAPALPASAEGWTPPQRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNM 475

Query: 350 FPYTRHME 357
           FP+T H+E
Sbjct: 476 FPHTAHVE 483


>gi|224098629|ref|XP_002187418.1| PREDICTED: similar to TRM2 tRNA methyltransferase 2 homolog B
           [Taeniopygia guttata]
          Length = 467

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 27/171 (15%)

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           GD  LL++ CG G   L LA    +V+ VE+ + ++E A +N A N ++N         E
Sbjct: 307 GDTVLLDICCGTGTIGLSLAHQVSKVIGVEVVEKAIEDAEWNAAFNGISNC--------E 358

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNP 325
           F  + + E    +L  +     R     V+P R+GL    V  +   ++   +LYISC P
Sbjct: 359 F-HSGKAEAVLPQLLAL-WEDARPLVAVVNPSRAGLHHRVVRAIRNCRSIRRLLYISCKP 416

Query: 326 DS--------LCRDLSI---LSTTHTIERLAL-FDQFPYTRHMECGVLLVR 364
           +         LC        L+    +  LA+ FD FP+T H E  +L  R
Sbjct: 417 EGEAMRNFLELCCPPDPQKKLAGEPFVPVLAIPFDMFPHTVHCELVLLFTR 467


>gi|242762804|ref|XP_002340452.1| tRNA(m5U54)methyltransferase [Talaromyces stipitatus ATCC 10500]
 gi|218723648|gb|EED23065.1| tRNA(m5U54)methyltransferase [Talaromyces stipitatus ATCC 10500]
          Length = 606

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 27/168 (16%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM-SSKEFTQ 271
           L++ Y G G F++ L++ F   L ++I   S+E AR N   N++ N       +S  F++
Sbjct: 426 LIDAYSGCGLFTVTLSQMFKSSLGIDIDVHSIENARENAKHNNLPNTGFAAADASLLFSK 485

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                 E                I +DPPR G     +  +  Y    + Y+SCN  +  
Sbjct: 486 VPYPPDE--------------TLIVIDPPRKGCSKDFLQQLLDYGPRRVAYVSCNVHTQA 531

Query: 330 RDLSIL-------STTHTIERLALFDQFPYTRHMECGVLL---VRKPS 367
           RD+  L          + IE +  FD FP T H+E   +L   V+KP 
Sbjct: 532 RDVGFLVQNDSPNGIRYEIESIRGFDFFPQTGHVEGLAILNKVVKKPG 579


>gi|260913773|ref|ZP_05920249.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pasteurella dagmatis
           ATCC 43325]
 gi|260632312|gb|EEX50487.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pasteurella dagmatis
           ATCC 43325]
          Length = 322

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 34/167 (20%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN------------HVNNVK 260
           L +L+CG G F L    H   VL        +E     I+A+             + NV 
Sbjct: 174 LWDLFCGVGGFGL----HCATVLQQTNPNKDIELTGIEISASAIAAATQSAQQLSLKNVS 229

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-I 318
              + +K F         F + K  D+       + V+PPR G+       +    PH I
Sbjct: 230 FQALDAKNFA--------FEQSKTPDL-------VIVNPPRRGIGTELAQFLNKLAPHFI 274

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           LY SCN +++ +DL+ L T + ++++ LFD FP++ H E   LL RK
Sbjct: 275 LYSSCNAETMGKDLTEL-TDYQLQKIQLFDMFPHSHHYEVLCLLERK 320


>gi|169840744|ref|ZP_02873857.1| RNA methyltransferase, TrmA family protein [candidate division TM7
           single-cell isolate TM7a]
          Length = 120

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 14/118 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G    ++++   +V  +E+ +  VE A  N   N + N   +          
Sbjct: 12  VFDLFSGTGTIGQIVSKKAKQVYGIELVEEDVEKANENAKLNGIENAHFIAGDV------ 65

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
                 F +L + D +  +   I +DPPR+G+ + T+  +  Y    I+Y+SCNP  L
Sbjct: 66  ------FEKLDEFDKNGIKPDIIILDPPRAGVGEKTLNKLLKYDVKDIIYVSCNPKHL 117


>gi|294658876|ref|XP_002770855.1| DEHA2F20042p [Debaryomyces hansenii CBS767]
 gi|202953455|emb|CAR66375.1| DEHA2F20042p [Debaryomyces hansenii]
          Length = 582

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 106/221 (47%), Gaps = 26/221 (11%)

Query: 159 KICLD--RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDL 213
           ++CL+  ++ + E++       +++   + F Q N  I  H+L+++   +         +
Sbjct: 367 RVCLNSHKNIITEKID----DFVFQFPASEFFQNNNSILSHVLDYIRFQIHKKPNSFKYI 422

Query: 214 LELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++ YCG+G F + L++      +V  +E+++ S+E A +N   N ++  + ++       
Sbjct: 423 VDTYCGSGFFGISLSKDIPEDGKVFGIEVSRLSIEHAVHNAKLNGLSVPERIQFIEGN-A 481

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSL 328
            A+   +EF     I   S     + +DP R G +   +  +++  P  I+Y+SCN  + 
Sbjct: 482 NAIFTNKEFINSGIIGQDS----IVIIDPSRKGSNKKFMEQLLEFKPKLIIYVSCNVFTQ 537

Query: 329 CRDLSI---LSTTHT----IERLALFDQFPYTRHMECGVLL 362
            RDL+    L + H     I+ +  FD FP T+H+E   +L
Sbjct: 538 ARDLADFDDLQSEHNCRYKIQDIVGFDFFPQTKHVESIAIL 578


>gi|325283297|ref|YP_004255838.1| (Uracil-5)-methyltransferase [Deinococcus proteolyticus MRP]
 gi|324315106|gb|ADY26221.1| (Uracil-5)-methyltransferase [Deinococcus proteolyticus MRP]
          Length = 419

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 131/335 (39%), Gaps = 54/335 (16%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           YR  A++ +   G     + + ++ + R R+    P   LI   + E+++  RL+P L A
Sbjct: 126 YRSGAQYLVTPQG-----LAYRERREHRPRLVEHDP---LIAPFVAELLS--RLDPALLA 175

Query: 103 KLFQIDYLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANK- 157
              +I    S  S + +  LI          E    LR A H   A    + L   A K 
Sbjct: 176 PAGEIAVRGSFLSGEVVAALI-------GPGEPRTYLRAADHLMDAGAVGVSLAAPAGKR 228

Query: 158 ----TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN-AGINVHMLEWVLAATKGIQGD 212
                ++      V ER       +I       F+Q N A   +  L+    A +G    
Sbjct: 229 FSAGVRLIAGESTVPERFG----DVILPVSAVGFSQVNPAAAGLAYLQVAELAGQGSHA- 283

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             +LY G G     L R F++V  ++ +  ++   R       + N+             
Sbjct: 284 -ADLYGGAGAIGRHLTRSFEQVTVLDSSAEALTRGRQAAGEAEIRNIT------------ 330

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
                 F +    ++     + I VDPPR+GLD A  G + A     ++Y+SC+P +  R
Sbjct: 331 ------FQQGAAEELEELSAEVIVVDPPRAGLDPAVRGHIHASTADRLVYVSCDPATWAR 384

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  ++     + R+   D +P T H+E   +L R
Sbjct: 385 DVGDLVGRGWKLGRVVPHDFYPQTSHVEVVSVLER 419


>gi|241203350|ref|YP_002974446.1| (uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857240|gb|ACS54907.1| (Uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 416

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             FTQ        M E V+A   G    + +L+ G+G FSL LAR   RV AVE    ++
Sbjct: 249 GGFTQATKPAEEAMAELVIAHA-GKSKRIADLFAGSGTFSLRLAR-IGRVHAVEAEAKAL 306

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  +  AA +   +K V +  ++     RR       K  D        +  DPPR+G 
Sbjct: 307 AALDH--AARNTQGLKPVTVEKRDL---FRRPLMTQEFKPYD-------AVVFDPPRAGA 354

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +     + ++    I+ +SCNP +L RDL+IL    + I ++   DQF +T H+E
Sbjct: 355 EFQCQELARSGVKKIVAVSCNPLTLARDLAILVEGGYRITQVTPIDQFLWTSHVE 409


>gi|289641282|ref|ZP_06473448.1| deoxyribonuclease/rho motif-related TRAM [Frankia symbiont of
           Datisca glomerata]
 gi|289508880|gb|EFD29813.1| deoxyribonuclease/rho motif-related TRAM [Frankia symbiont of
           Datisca glomerata]
          Length = 537

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 295 IFVDPPRSGLDDAT-VGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           + +DPPR+G   A  + ++   P  + Y+SC+P SL RDL++  T  +++  L  FD FP
Sbjct: 459 VVLDPPRAGAGRAVMLALLALRPRAVAYVSCDPASLARDLAVAVTQGYSLVTLRAFDLFP 518

Query: 352 YTRHMECGVLLV 363
            T H+EC  ++V
Sbjct: 519 MTAHVECVAIMV 530


>gi|212529570|ref|XP_002144942.1| tRNA(m5U54)methyltransferase [Penicillium marneffei ATCC 18224]
 gi|210074340|gb|EEA28427.1| tRNA(m5U54)methyltransferase [Penicillium marneffei ATCC 18224]
          Length = 606

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 23/162 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ Y G G F++ L++ F   L ++I   S+E AR N   N++ N       +    Q 
Sbjct: 431 LIDAYSGCGLFTVTLSKMFKSSLGIDIDVHSIENARENAKYNNLPNTGFTAADATVLFQK 490

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCR 330
           +              +      I +DPPR G     +  +  Y    I Y+SCN  +  R
Sbjct: 491 V-------------PYPPDETLIVIDPPRKGCSKDFLRQLLEYGPRRIAYVSCNVHTQAR 537

Query: 331 DLSIL-------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+  L          + IE +  FD FP T H+E G+ ++ K
Sbjct: 538 DVGYLVQNDSPNGVRYDIESVRGFDFFPQTGHVE-GLAILNK 578


>gi|66800597|ref|XP_629224.1| hypothetical protein DDB_G0293244 [Dictyostelium discoideum AX4]
 gi|60462618|gb|EAL60821.1| hypothetical protein DDB_G0293244 [Dictyostelium discoideum AX4]
          Length = 646

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 27/201 (13%)

Query: 180 YRQIENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           +R   N+F Q N          +L+W   +       LL++ CG G     +++   +V+
Sbjct: 397 FRVSANAFFQINTKATELLYSKVLDWAQVSQDTT---LLDICCGTGTIGQCISKKVKKVI 453

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +EI+  +V  +  N   N ++N + +   +++    +  +   N  KD +         
Sbjct: 454 GLEISPDAVIDSINNAKLNKIDNAEYLVGKAEDTLPTLLTKS--NGGKDQEFIG------ 505

Query: 296 FVDPPRSGLDDATVGMVQAYPHI---LYISCN-----PDS--LCRDLS--ILSTTHTIER 343
            VDPPR GL    +  ++ +  I   +Y+SCN     PD+  LC+ +S  +  T     +
Sbjct: 506 IVDPPRGGLHGDVLKAIRTFEPIKKLVYVSCNQNSLIPDAAKLCKGISKTMKGTPFVPTK 565

Query: 344 LALFDQFPYTRHMECGVLLVR 364
              FD FP+T  +E  VL  R
Sbjct: 566 AIAFDLFPHTDLVELVVLFER 586


>gi|126272598|ref|XP_001369338.1| PREDICTED: similar to CXorf34 protein [Monodelphis domestica]
          Length = 469

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 89/214 (41%), Gaps = 52/214 (24%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAV 237
           +R    +F Q N+   V +L  V+    G+  +  LL+L  G G  SL LA H  +VL+ 
Sbjct: 279 FRISPGAFFQINSAA-VEVLYRVVGELIGVDPNTLLLDLSQGTGATSLSLAPHTSQVLST 337

Query: 238 EIAKPSVEAARYNIA----------ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
            +   +VE A++  A          A+HV NV    + S+E  Q+               
Sbjct: 338 GLVGQAVEDAKWTTAFNGITNWEFHADHVENVVPQLLKSQEAGQS--------------- 382

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDS--------LC------R 330
                  + VDP R+GL+   V  ++   A   +LY+SC P+         LC      +
Sbjct: 383 -----PVVMVDPSRTGLNFQVVRAIRNCTAIRTLLYVSCYPEGKAKRNFLELCCPPDPGK 437

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DL  L     + +    D FP+T H E  VL  R
Sbjct: 438 DL--LGEPFVLRQAVPVDMFPHTPHYELVVLFTR 469


>gi|85374206|ref|YP_458268.1| putative RNA methyltransferase [Erythrobacter litoralis HTCC2594]
 gi|84787289|gb|ABC63471.1| putative RNA methyltransferase [Erythrobacter litoralis HTCC2594]
          Length = 402

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 202 VLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V AA++ + G   + +L+ G G F+L LA   ++VLA E ++             H+   
Sbjct: 247 VAAASEWLAGHSPVADLFAGLGTFALSLAGP-EKVLAAEASR-----------GAHLACR 294

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHI 318
           +  R+S K    A  R+   N     +I   +   + +DPPR+G  +    + Q+    +
Sbjct: 295 QAARLSGKPVF-AQHRDLFHNPYSAEEI--SKLAAVLLDPPRAGAREQVEQIAQSSVGRV 351

Query: 319 LYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           +YISCNP S  +D   ++     ++ +    QF ++ H+E   L VR PSG
Sbjct: 352 VYISCNPASWAKDAKRLVDAGFELKEVRPVGQFRWSTHVELASLFVR-PSG 401


>gi|332669814|ref|YP_004452822.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas fimi ATCC
           484]
 gi|332338852|gb|AEE45435.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas fimi ATCC
           484]
          Length = 375

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 25/201 (12%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSL 225
           R+ V G  L  R    SF Q N  +   +      WV  A       + +LYCG G F+L
Sbjct: 193 RMRVNGLDLHLR--PQSFFQTNTDVAAALYRQAATWVDDAAPA---SVWDLYCGVGGFAL 247

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A     V+ VE +  +V +A   + A      +    +      A+R        +D+
Sbjct: 248 HVADGTRDVVGVETSGEAVASA--TLTARDAGLARTTFHADDATAFALRAAP-----RDV 300

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR G+     G +       ++Y SCN  SL RDL+ + +   + R
Sbjct: 301 P------DLVVVNPPRRGIGADLAGWLDRSGVGRVVYSSCNAQSLARDLAAMPSLRPV-R 353

Query: 344 LALFDQFPYTRHMECGVLLVR 364
             + D FP T H E   LL R
Sbjct: 354 GRVLDMFPQTTHYEVVTLLER 374


>gi|254788168|ref|YP_003075597.1| RNA methyltransferase, TrmA family [Teredinibacter turnerae T7901]
 gi|237687433|gb|ACR14697.1| RNA methyltransferase, TrmA family [Teredinibacter turnerae T7901]
          Length = 393

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 26/179 (14%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVE 245
           F Q N+  N  M  W+           +EL+CG+GN + VL      ++ AVE+   ++ 
Sbjct: 224 FKQGNSAQNTRMRAWLAERIAPGTQQAVELFCGSGNLTEVLCDAGVAKISAVEVVDEAIA 283

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           A R  + A  V  +     +        R       LK  ++       + +DPPR G  
Sbjct: 284 ALRAKVLAG-VEPIVCDLFADDGLASVAR------ALKTAEL-------LVLDPPREGWK 329

Query: 306 DATVGMVQAYP------HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
                   A+P       +L +SC+  +  RDLS  L     +  +   DQFP+T H+E
Sbjct: 330 S----RAAAWPKNCQVRQVLSVSCDLATFTRDLSFFLDQGFRLVEVQPLDQFPHTPHIE 384


>gi|332185328|ref|ZP_08387077.1| hypothetical protein SUS17_262 [Sphingomonas sp. S17]
 gi|332015052|gb|EGI57108.1| hypothetical protein SUS17_262 [Sphingomonas sp. S17]
          Length = 398

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 19/155 (12%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G G F+L L     +V A E A+ ++ + +   AAN                    
Sbjct: 259 DLFAGLGTFALALP---GKVYAAEGARDAILSLKG--AANACGRAVFAE----------- 302

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
             R+  R         RF  I +DPPR+G  D    +  A    + Y+SCNP S  RD  
Sbjct: 303 -HRDLYRRPLTKAELDRFDAIVLDPPRAGARDQAEALASAAVGAVAYVSCNPSSFARDAR 361

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           ++     ++E +    QF ++ H+E     VR+PS
Sbjct: 362 MMVDQGWSLEWVQPVGQFRWSTHVELAARFVRQPS 396


>gi|225619621|ref|YP_002720878.1| TrmA family RNA methyltransferase [Brachyspira hyodysenteriae WA1]
 gi|225214440|gb|ACN83174.1| RNA methyltransferase, TrmA family [Brachyspira hyodysenteriae WA1]
          Length = 398

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 30/153 (19%)

Query: 213 LLELYCGNGNFSLVLA---RHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++ELY G+G F+  L    + F+   + +A EI K SV                   + +
Sbjct: 259 IVELYAGSGFFTSALENKIKSFNNHYKFIASEINKDSV-------------------LIA 299

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCN 324
            ++   ++ E     LK+ID   Y    + +DPPR G++   V   +      I+Y+SC+
Sbjct: 300 NKYDLKIKNEDALITLKNID---YDIDALILDPPREGMNKNVVEEIIRIKPKKIIYVSCD 356

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           P +  RD+++L   + +  L + D F  T H+E
Sbjct: 357 PMTFARDINLLKEYYNLSDLNIIDMFADTYHIE 389


>gi|329121766|ref|ZP_08250383.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
 gi|327468236|gb|EGF13722.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
          Length = 133

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 15/139 (10%)

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA+    V+ +EI K ++E A+ N   N + NV+       ++            L ++ 
Sbjct: 3   LAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAKY------------LPELA 50

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTT-HTIER 343
               + + + +DP R+G D+  +  + +  P  I+Y+SCN  +  RD+  LS   + + +
Sbjct: 51  KKGIKAEVVVLDPVRAGCDEKVIEAIGKINPERIVYVSCNVATQARDIERLSKKGYKLIK 110

Query: 344 LALFDQFPYTRHMECGVLL 362
           +   D FP T H+E   LL
Sbjct: 111 IQPIDMFPQTTHVETVALL 129


>gi|149640047|ref|XP_001513281.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 481

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 27/168 (16%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQ 271
           LL++ CG G   L LA    RVL VE+ + +VE AR+  A N ++N +     + K   Q
Sbjct: 325 LLDICCGTGAIGLSLAPRVSRVLGVELIEQAVEDARWTAAFNGISNCEFHAGPAEKIVPQ 384

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS- 327
            +  + E   L  +           V+P R+GL    V  ++    I   +++SC P   
Sbjct: 385 LLVSQMEGRSLVAV-----------VNPARAGLHPRVVRAIRNCGPIRRLVFVSCKPHGE 433

Query: 328 -------LC--RDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                  LC   D S  +L      E     D FP+T H E  VL  R
Sbjct: 434 AMRNFFELCCPPDASKKLLGEPFVPEEAVPVDLFPHTLHCELVVLFSR 481


>gi|261415209|ref|YP_003248892.1| (Uracil-5)-methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371665|gb|ACX74410.1| (Uracil-5)-methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328173|gb|ADL27374.1| tRNA (uracil-5-)-methyltransferase family protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 386

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 14/160 (8%)

Query: 210 QGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +GD  L+LYCG G FS  L      VL VE   PS++ A+ +      N   I     + 
Sbjct: 237 KGDHFLDLYCGYGLFSFALGEAAKSVLGVEWEGPSIDCAKASARFLKKNYKFIAGKIDET 296

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPD 326
           F Q MR  R      +          I +DPPR G +   +  +    P  +L+I C  D
Sbjct: 297 FVQ-MRLPRPIPGEPE---------RILLDPPRKGTEPGVIRALAMRKPVRVLHIFCGTD 346

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
            +   L+      + ++ +   D FP T H+E  V L +K
Sbjct: 347 EIPAALAEWERYGYRVKEVLPMDLFPGTPHLETLVALEKK 386


>gi|255025037|ref|ZP_05297023.1| hypothetical protein LmonocyFSL_18750 [Listeria monocytogenes FSL
           J1-208]
          Length = 160

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 16/119 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG G      A     V  ++I   S+E A+ N   N + NV      +++    
Sbjct: 54  LVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPK 113

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSL 328
             +E             +R   + VDPPRSG D   +     V+A   ++Y+SCNP +L
Sbjct: 114 WVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLEVEA-KQLVYVSCNPSTL 159


>gi|328773587|gb|EGF83624.1| hypothetical protein BATDEDRAFT_34298 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 823

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 25/141 (17%)

Query: 203 LAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           LA++  I G    LL+L CG G   + LA HF +V+ VE+ + +++ A  N   N V N 
Sbjct: 655 LASSSPIDGSNTVLLDLCCGTGTIGITLASHFKKVVGVELVQEAIDNAIVNAQDNGVTNA 714

Query: 260 -----KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                K+     + F   +  E +                  +DP R G++   +  ++A
Sbjct: 715 VYLCGKVEEKIGEVFRNHVGPEDQV--------------VAVLDPARVGVNGTVIAAIRA 760

Query: 315 ---YPHILYISCNPDSLCRDL 332
                H++YISC+    C + 
Sbjct: 761 CRHLKHVVYISCDAKQACSNF 781


>gi|294892742|ref|XP_002774211.1| RNA m5u methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239879428|gb|EER06027.1| RNA m5u methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 517

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 34/171 (19%)

Query: 223 FSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           F+ +L    D   RV  +E+   +VE A+ +  AN ++       SS  F      E   
Sbjct: 112 FACILGPKPDGKPRVYGLELVPDAVEDAKASARANKLD-------SSVRFIAGRAEETIE 164

Query: 280 NRLKDI--DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCRDLSI 334
           + +K+   DI   +  T+ VDPPRSGL    +  ++       I+Y+SCNPD+L RD+  
Sbjct: 165 DVIKEACSDIQGDQKLTVIVDPPRSGLHPNVLRCLRRCSFINRIVYVSCNPDTLSRDVIQ 224

Query: 335 LSTTHT------------------IERLAL-FDQFPYTRHMECGVLLVRKP 366
           L+                      + ++ +  D FP+T H E  +LL R+P
Sbjct: 225 LTKPEADYTAAGGQEGMKEEGGILVPKIIVPIDMFPHTYHCEAMLLLDREP 275


>gi|324116073|gb|EGC09997.1| rumB protein [Escherichia coli E1167]
          Length = 120

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 18/135 (13%)

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           ++  +EIA  ++  A+ + A   +  ++   + S +F  A     E              
Sbjct: 2   QLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGEVPEL------------- 48

Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
             + V+PPR G+       +   A   I+Y SCN  ++ +D+  L   + IER+ LFD F
Sbjct: 49  --VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELPG-YRIERVQLFDMF 105

Query: 351 PYTRHMECGVLLVRK 365
           P+T H E   LLV++
Sbjct: 106 PHTAHYEVLTLLVKQ 120


>gi|162450819|ref|YP_001613186.1| RNA methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161161401|emb|CAN92706.1| RNA methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 765

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 16/158 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS-KEFTQ 271
           +L+LY G+G  SL LA+  +RVL VE   P+   AR    A  ++    VR     E   
Sbjct: 325 ILDLYGGSGAISLALAQGGNRVLMVESFAPAAANARAAAEAQGLSQRVEVRTGDVAEIVG 384

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
           ++    E            +F  I V+PPR G+       +     P ++Y+SC+PD+L 
Sbjct: 385 SLVNSSE------------KFDGIVVNPPRRGVSPTAREAIARLGAPLLVYVSCDPDTLA 432

Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           RDL       ++   L   D  P T  +E    L R P
Sbjct: 433 RDLDHFCRLGYSSTELTPLDMIPLTEEIETIAALRRTP 470


>gi|325954001|ref|YP_004237661.1| RNA methyltransferase, TrmA family [Weeksella virosa DSM 16922]
 gi|323436619|gb|ADX67083.1| RNA methyltransferase, TrmA family [Weeksella virosa DSM 16922]
          Length = 471

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 26/204 (12%)

Query: 174 AGRTLIYRQIEN--------SF--TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           AG   I  Q+E+        SF  T P     ++ L    A   G +  + +LY G G  
Sbjct: 280 AGEDHIVEQMEDLHFKIGPKSFYQTNPQQAYELYKLTRDFAGLTGKEL-VYDLYTGTGTI 338

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +  +++   +V+ VE    ++ AA+     N + N +        F   M+     + L 
Sbjct: 339 AQFVSKKARKVVGVESVAEAIYAAKAAAELNKITNCEF-------FCGDMK-----DVLN 386

Query: 284 DIDIHSYRFKTIFV-DPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHT 340
           +  I  +    + + DPPR G+    V   ++     I+Y+SCN  +  RDL ++   + 
Sbjct: 387 EDFIQQHGIPDVLITDPPRDGMHKKVVENILLMNPKKIVYVSCNSATQARDLELMKEQYK 446

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           I ++   D FP T H+E  VLL R
Sbjct: 447 IIKVQPVDMFPQTHHVENIVLLER 470


>gi|296171903|ref|ZP_06852967.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295893902|gb|EFG73673.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 135

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 297 VDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           +DPPR+G     + ++ A   P +++I C   S  RD+ +     + +E++ +FD FP T
Sbjct: 65  LDPPRTGAGRDVIDLLAAAGVPRVVHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLT 124

Query: 354 RHMECGVLLVR 364
            H EC  LL R
Sbjct: 125 HHTECVALLTR 135


>gi|111221522|ref|YP_712316.1| putative RNA methyltransferase [Frankia alni ACN14a]
 gi|111149054|emb|CAJ60736.1| putative RNA methyltransferase [Frankia alni ACN14a]
          Length = 581

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 16/155 (10%)

Query: 214 LELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LY G G F+  LA       RV+A+E      +AA    AA  + ++  V + S   T
Sbjct: 381 LDLYAGAGLFAAFLAVDVGSGGRVVAME-----SDAAAVAAAARSLADLPQVSLRSVRVT 435

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSL 328
            A  R      +      + R     +DPPR+G   A +  + A+ P  + Y++C+P +L
Sbjct: 436 PATVRG-----VIGSGPTAGRVDIAVLDPPRTGAGPAVMAALLAHHPRAVAYVACDPVAL 490

Query: 329 CRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
            RDL+  S + + +  L  FD FP T H+EC  LL
Sbjct: 491 GRDLAAASESGYELVSLRAFDLFPMTAHVECVALL 525


>gi|126724609|ref|ZP_01740452.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Rhodobacterales
           bacterium HTCC2150]
 gi|126705773|gb|EBA04863.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Rhodobacterales
           bacterium HTCC2150]
          Length = 406

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 18/168 (10%)

Query: 202 VLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +LA+ K +  D   +++L+ G G FSL LA     V AVE     +EA   +        
Sbjct: 249 LLASVKDVVADAKTVIDLFAGCGTFSLPLAEDA-MVRAVEGEGDMLEA--LDKGWRKAKG 305

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH 317
           +K +   +++     RR    +  K ID        + +DPPR+G +     + +A    
Sbjct: 306 LKTIVSETRDL---YRRPLLPDEFKKID-------AVVLDPPRAGAEAQVAELAKADVAK 355

Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           I  +SCNP +  RD + L +  +T++ + + DQF ++ H+E      R
Sbjct: 356 IAMVSCNPVTFARDAATLIAGGYTMQWVDVVDQFRWSSHIELAAAFTR 403


>gi|210630035|ref|ZP_03296220.1| hypothetical protein COLSTE_00104 [Collinsella stercoris DSM 13279]
 gi|210160712|gb|EEA91683.1| hypothetical protein COLSTE_00104 [Collinsella stercoris DSM 13279]
          Length = 405

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 24/167 (14%)

Query: 204 AATKGIQ---GD-LLELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAA 253
           +A +G+Q   GD +L+ YCG+G   L  A          R++ VE     V  A+ N   
Sbjct: 240 SAIEGMQLREGDTVLDTYCGSGTIGLAAAASARANGAHVRLIGVERNVEGVRDAQRNAQV 299

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + ++      +++ T+ MR   E     D+         + +DPPR+G   A V    
Sbjct: 300 NGLEDMS--DFIARDATEYMREAAEQGLNVDV---------LIMDPPRAGSAPAFVEAAT 348

Query: 314 AY-PH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357
              P  I+YISCNP +  RDL       + ++RL   D FP+T H E
Sbjct: 349 TLRPRRIVYISCNPVTHVRDLEQFGEAGYRVDRLTPVDLFPHTTHTE 395


>gi|148272174|ref|YP_001221735.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830104|emb|CAN01033.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 421

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 13/160 (8%)

Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LY G G  +  +   F    R+ +VE  + + E A  N+A   V    +     +   
Sbjct: 269 LDLYGGVGLLAAAVGDRFGDTVRITSVESDEVATEFAGDNLA-EWVGAASLTARVDRYLQ 327

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSL 328
             +R      R +       +  T+ +DPPR+G     V  + +  P  ++Y++C+P +L
Sbjct: 328 NLVREASPAERRR------LQAATVVLDPPRAGAKKPVVDALAELRPAQVVYVACDPVAL 381

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            RD+++ +   + +  +  FD FP+T H+E   +LV   S
Sbjct: 382 ARDVALFAERGYELRSVRSFDLFPHTHHVESVAVLVPAAS 421


>gi|299530634|ref|ZP_07044050.1| 23S rRNA 5-methyluridine methyltransferase [Comamonas testosteroni
           S44]
 gi|298721378|gb|EFI62319.1| 23S rRNA 5-methyluridine methyltransferase [Comamonas testosteroni
           S44]
          Length = 499

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 42/226 (18%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G T+ ++  +  FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     
Sbjct: 279 GITMPFKPTD--FTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFTLPIATMARE 336

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL +E ++  V+ +  N AAN+    +  +++S  F         F     + I      
Sbjct: 337 VLGIEGSETLVKRSHENYAANNATRSEDDKLASTSFVA----RNLFEMTPAMLIADGNSD 392

Query: 294 TIFVDPPRSG----------LDDATVGMVQA----------------------YPH-ILY 320
              VDPPR G          +    +G  Q                       +P  I+Y
Sbjct: 393 KWLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFPKRIVY 452

Query: 321 ISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +SCNP +L RD  +L     +      + + FP+T H+E   +  R
Sbjct: 453 VSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 498


>gi|310817142|ref|YP_003965106.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ketogulonicigenium
           vulgare Y25]
 gi|308755877|gb|ADO43806.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ketogulonicigenium
           vulgare Y25]
          Length = 399

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+ G G FSL LA   + V AVE   P +EA +    A        +R  + E    
Sbjct: 258 VVDLFAGCGTFSLPLASKTE-VHAVESVAPMIEALQRGWRA-----AGGLRKLTTEVRDL 311

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            R     N L  ID+    F    +DPPR+G +     +  A  P I  +SCNP +  RD
Sbjct: 312 FR-----NPLLPIDLKD--FDAAIIDPPRAGAEAQVRQLAAASVPVIAMVSCNPVTFARD 364

Query: 332 LSIL-STTHTIERLALFDQFPYTRHME 357
             IL      +  + + DQF ++ H+E
Sbjct: 365 ARILVEAGFQMGPIWVVDQFRWSTHVE 391


>gi|323452481|gb|EGB08355.1| hypothetical protein AURANDRAFT_64214 [Aureococcus anophagefferens]
          Length = 453

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 102/220 (46%), Gaps = 19/220 (8%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209
           L+ R +   + +D D V E+     R L +    + F Q N      +++ V+A A +  
Sbjct: 247 LLLRGHAAGVAVDPDEVVEQEV---RGLRFAHKASEFWQNNDDALPALVDHVVAEARRSG 303

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              LL+ YCG G F+L  A  FD V  VE++  +V AA  N A N +  V    +     
Sbjct: 304 ATKLLDCYCGGGLFALAAAADFDAVRGVEVSAANVAAATRNAARNGLGGVATFVVG---- 359

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
               R ER F    D    +     + +DPPR+G   A +  + A+    ++Y+SC+P +
Sbjct: 360 ----RAERLF---ADAAEFAGGDTVVVMDPPRAGASAAFLDQLLAFAPVRVVYVSCDPAT 412

Query: 328 LCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L RD + L     + +     FD FP TRH+E  V+  R+
Sbjct: 413 LARDAAALVAGGDYAVASAVPFDLFPMTRHVEAVVVFDRR 452


>gi|329927629|ref|ZP_08281776.1| hypothetical protein HMPREF9412_2984 [Paenibacillus sp. HGF5]
 gi|328938327|gb|EGG34718.1| hypothetical protein HMPREF9412_2984 [Paenibacillus sp. HGF5]
          Length = 108

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 295 IFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           I VDPPR G D   +  +++  P  ++Y+SCNP +L RDL +L    ++   +   D FP
Sbjct: 35  IVVDPPRKGCDPRLLETILEMKPERVVYVSCNPSTLARDLRMLEDGGYSTVEVTPVDMFP 94

Query: 352 YTRHMECGVLLVR 364
           +T H+E   +LVR
Sbjct: 95  HTVHVESVAVLVR 107


>gi|148259549|ref|YP_001233676.1| (Uracil-5)-methyltransferase [Acidiphilium cryptum JF-5]
 gi|146401230|gb|ABQ29757.1| 23S rRNA m(5)U-1939 methyltransferase [Acidiphilium cryptum JF-5]
          Length = 362

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 31/160 (19%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV----EAARYNIAANHVNNVK--IVR--M 264
           ++ELY G G  +  LA H  RV AVE + P++    EAAR    A  ++  +  + R  +
Sbjct: 222 IVELYAGIGTLTGALAAHA-RVHAVEGSAPALAALDEAARTGGQAGRIDTERRDLARRPV 280

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISC 323
           ++KE   A                      + +DPP  G       +V+A    I+Y+SC
Sbjct: 281 TAKELAGA--------------------ACVVLDPPFDGAGPQIAPLVEAKVQRIVYVSC 320

Query: 324 NPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           NP++L R+ +  +   + +      DQFP + H+E  V+L
Sbjct: 321 NPEALAREAAPFARAGYRLLASTPIDQFPGSDHLESVVVL 360


>gi|294787031|ref|ZP_06752285.1| putative TRAM domain protein [Parascardovia denticolens F0305]
 gi|315226679|ref|ZP_07868467.1| 23S rRNA methyltransferase/RumA [Parascardovia denticolens DSM
           10105]
 gi|294485864|gb|EFG33498.1| putative TRAM domain protein [Parascardovia denticolens F0305]
 gi|315120811|gb|EFT83943.1| 23S rRNA methyltransferase/RumA [Parascardovia denticolens DSM
           10105]
          Length = 457

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 16/157 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L +LY G+G F+L +A  F +  VL++E A  +V+ A  NI    +N  K +     +  
Sbjct: 309 LWDLYSGSGLFTLPMATFFPQAQVLSIEGAPVAVKNAHKNIKQARLN--KTITALEGDVA 366

Query: 271 QAMRR--EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
           + +R        +L   DI       I +DPPR+G        +       I+Y+SC+  
Sbjct: 367 ETIRSLTAHGHAQLTKPDI-------ILLDPPRAGAGRKVCQQMAESGAKAIIYVSCDVT 419

Query: 327 SLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           +L RD + L+   + I  +  +D +P T H+E   L 
Sbjct: 420 NLARDTAYLTEAGYHISDIQAYDIYPMTHHVETVALF 456


>gi|302382937|ref|YP_003818760.1| (uracil-5)-methyltransferase [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193565|gb|ADL01137.1| (Uracil-5)-methyltransferase [Brevundimonas subvibrioides ATCC
           15264]
          Length = 412

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 29/203 (14%)

Query: 170 RLTVAGRTLI-YRQIENSFTQ-----PNAGI-------NVHMLEWVLAATKGIQGDLLEL 216
           RL++AG TL+  RQ    F       P  G           M    +AA KG +  + +L
Sbjct: 217 RLSLAGETLVMARQPRVRFGPATVPLPAGGFLQAVPEAEDAMTSRAVAAVKGAK-VVADL 275

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           +CG G F+  LA    RV+A + +   + A +  I       +K +   +++     RR 
Sbjct: 276 FCGAGTFTFPLA-TVARVIAADASAAGIAALKVGI--GSAKGMKAIEAQARDL---FRRP 329

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCNPDSLCRDLSIL 335
                L   D+ +   + I  DPPR+G  D T  +      ++  +SCNP +  RD  +L
Sbjct: 330 -----LTPFDLKAC--EAIVFDPPRAGAIDQTAQIAGTKAAVVVGVSCNPQTFARDARVL 382

Query: 336 -STTHTIERLALFDQFPYTRHME 357
             +   +E +   DQF ++ H+E
Sbjct: 383 IDSGFRLETVTPVDQFLWSSHVE 405


>gi|163737964|ref|ZP_02145380.1| (Uracil-5)-methyltransferase [Phaeobacter gallaeciensis BS107]
 gi|161388580|gb|EDQ12933.1| (Uracil-5)-methyltransferase [Phaeobacter gallaeciensis BS107]
          Length = 415

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271
           +++L+ G G F+L LA++ + V AVE     + A   +        +K V   +++ F  
Sbjct: 269 IVDLFAGCGTFTLPLAKNAE-VHAVEGESSMLRA--LDAGWRQAKGLKKVTTETRDLFRN 325

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330
            +  E       D++     F    +DPPR+G +     +V A    + Y+SCNP +  R
Sbjct: 326 PLLAE-------DLNPFGAAFDVAVIDPPRAGAEAQVTQLVTARTKRVAYVSCNPVTFAR 378

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357
           D  IL+   + ++ + + DQF ++ H E
Sbjct: 379 DAKILTDGGYRLDWVQVVDQFRWSSHCE 406


>gi|163742640|ref|ZP_02150026.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Phaeobacter
           gallaeciensis 2.10]
 gi|161384225|gb|EDQ08608.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Phaeobacter
           gallaeciensis 2.10]
          Length = 415

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 13/148 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-FTQ 271
           +++L+ G G F+L LA++ + V AVE     + A   +        +K V   +++ F  
Sbjct: 269 IVDLFAGCGTFTLPLAKNAE-VHAVEGESSMLRA--LDAGWRQAKGLKKVTTETRDLFRN 325

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330
            +  E       D++     F    +DPPR+G +     +V A    + Y+SCNP +  R
Sbjct: 326 PLLAE-------DLNPFGAAFDVAVIDPPRAGAEAQVTQLVTARTKRVAYVSCNPVTFAR 378

Query: 331 DLSILS-TTHTIERLALFDQFPYTRHME 357
           D  IL+   + ++ + + DQF ++ H E
Sbjct: 379 DAKILTDGGYRLDWVQVVDQFRWSSHCE 406


>gi|299134743|ref|ZP_07027935.1| (Uracil-5)-methyltransferase [Afipia sp. 1NLS2]
 gi|298590553|gb|EFI50756.1| (Uracil-5)-methyltransferase [Afipia sp. 1NLS2]
          Length = 413

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 16/174 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF QP       +   V    KG +  + +L+CG G F+L LA  F RV A +    +  
Sbjct: 247 SFMQPTQAGEETLAALVAERCKGAK-RIADLFCGFGPFALRLAEKF-RVSAFD--SDAAA 302

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N A      +K +   +++     RR      L++ D   +       DPPR G +
Sbjct: 303 VAALNDAIRATQGLKPLTAEARDL---FRRPLVPQELREFDAAVF-------DPPRQGAE 352

Query: 306 DATVGMVQA-YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357
             +     +   H++ +SCNP +  RD  I L     +  +   DQF +T H+E
Sbjct: 353 AQSRQFAASRLTHVVAVSCNPATFARDAKILLGGGFKLSEVTPVDQFRHTPHVE 406


>gi|162455576|ref|YP_001617943.1| SAM-dependent methyltransferases [Sorangium cellulosum 'So ce 56']
 gi|161166158|emb|CAN97463.1| SAM-dependent methyltransferases [Sorangium cellulosum 'So ce 56']
          Length = 465

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +LEL+ G+G  S++LAR   R      A+P    A           V++   +     Q 
Sbjct: 304 VLELFAGSGTLSVLLARGALR--PSPGAEPGGAVASGPPGPASFTAVELSSGAVACLRQN 361

Query: 273 MRREREFNRLKDIDIHSY----RFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDS 327
           +       +  + D   Y    R   + +DPPRSG   A   +  +   ++ Y+SC+P +
Sbjct: 362 LAARGLAGKAIEADADQYPIPARTDVVVLDPPRSGAPGAARAIAASSARVVVYVSCDPAT 421

Query: 328 LCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L RDL  IL     I  +   + FP T H+E  V L R
Sbjct: 422 LARDLGEILRGGFEITDIEAVELFPQTSHIESIVRLSR 459


>gi|291518465|emb|CBK73686.1| 23S rRNA m(5)U-1939 methyltransferase [Butyrivibrio fibrisolvens
           16/4]
          Length = 428

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 34/233 (14%)

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI-------RLRDALHARKYQIQLIGRANKTK 159
           +D +TS      ++ IY   L   W++  +       +L   LH +  +   +     T+
Sbjct: 216 VDLVTSTQ----ISSIYEIALLAGWKQALLDCPDWEGKLTGILHTKNDRAADVVADEGTE 271

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA-GINV-HMLEWVLAATKGIQGDLLELY 217
           I   +D+  E L      L +     SF Q N+ G  V +       +T     ++ +LY
Sbjct: 272 ILYGQDWFKEELL----GLSFTISPFSFFQTNSLGAEVLYSTARDFISTGADGAEVYDLY 327

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G  + V+A     V  VEI   +VEAA+ N   N ++N   +               
Sbjct: 328 SGTGTIAQVIAPAAKHVTGVEIIAEAVEAAKENAKLNGLDNCDFIAG------------- 374

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
             + LK +D  + +   I +DPPR G+    +  +  Y    ++YISC P SL
Sbjct: 375 --DVLKVLDDITEKPDYIILDPPRDGIHPKALDKIIDYGVDSLVYISCKPTSL 425


>gi|134098393|ref|YP_001104054.1| 23S rRNA methyltransferase/RumA [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006905|ref|ZP_06564878.1| 23S rRNA methyltransferase/RumA [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911016|emb|CAM01129.1| 23S rRNA methyltransferase/RumA [Saccharopolyspora erythraea NRRL
           2338]
          Length = 410

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 24/167 (14%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVK 260
           AA +G  G   +LY G G F+  LA        VL VE ++ +VE A  N+      ++ 
Sbjct: 258 AAPEG--GVAWDLYGGVGLFAAGLAEQVGPTGSVLLVESSRRAVEDAVSNL-----RDLP 310

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHI 318
            V   +      +R E     L   D+       + +DPPR G        V A+    I
Sbjct: 311 QVEFRAGTAEDVVRDEG----LPSPDV-------VVLDPPRKGAGREVAEAVCAHRPSRI 359

Query: 319 LYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++++C+P +L RD+ + +   + +  +  FD FP T H+EC  LL R
Sbjct: 360 VHVACDPAALARDVGLFVEGGYRLVEIEAFDAFPMTHHVECIALLER 406


>gi|296393670|ref|YP_003658554.1| deoxyribonuclease/rho motif-related TRAM [Segniliparus rotundus DSM
           44985]
 gi|296180817|gb|ADG97723.1| deoxyribonuclease/rho motif-related TRAM [Segniliparus rotundus DSM
           44985]
          Length = 390

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 29/194 (14%)

Query: 179 IYRQIENSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHFD-- 232
           ++R    +F QP+        E    WV  A   +  DL   Y G G F+ VLAR     
Sbjct: 214 VWRVPVQAFWQPHRDAARRYTELVAQWVGEAPGAVAWDL---YGGAGLFAAVLARAVGPT 270

Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV  V+ A  S  AA  ++    + +V+++   + +    +                  
Sbjct: 271 GRVFTVDSAGASSRAAAASL--KDLRHVEVLSGPTGKLLAGLPSA--------------- 313

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQF 350
            +   VDPPR+G   A +  +     +++I C   +  RD+ + +   + +  + +FD F
Sbjct: 314 -QVAVVDPPRAGAGRAVIAALARTERVIHIGCEAAAFSRDVGLYVQQGYAVREIRVFDAF 372

Query: 351 PYTRHMECGVLLVR 364
           P T H+EC  LL R
Sbjct: 373 PLTHHVECLALLER 386


>gi|296139597|ref|YP_003646840.1| deoxyribonuclease/rho motif-related TRAM [Tsukamurella
           paurometabola DSM 20162]
 gi|296027731|gb|ADG78501.1| deoxyribonuclease/rho motif-related TRAM [Tsukamurella
           paurometabola DSM 20162]
          Length = 392

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 24/157 (15%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G F+ VLAR   RV  VE +  +V A R ++      +   VR    +  + + 
Sbjct: 255 DLYGGAGVFAAVLARLGLRVDVVETSSDAVAAGRASL------DPSAVRFHRGDVARTVG 308

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRS--GLDDATVGMVQAYPHILYISCNPDSLCRDL 332
           R R               + + +DPPRS  G     V        ++++ C+P +  RDL
Sbjct: 309 RLRA-------------PRVVVLDPPRSGAGKAVVAVVAAAGPAAVIHVGCDPAAFARDL 355

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           ++       +  +   D FP T H+EC  L V  P+G
Sbjct: 356 ALFRDAGFAVREVVALDAFPGTHHLEC--LAVLMPAG 390


>gi|261201804|ref|XP_002628116.1| tRNA(m5U54)methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239590213|gb|EEQ72794.1| tRNA(m5U54)methyltransferase [Ajellomyces dermatitidis SLH14081]
          Length = 575

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 27/170 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L ++I+ PS+ AAR N  AN ++N       +      
Sbjct: 397 LLDAYSGSGLFTVTLSPLFLSSLGIDISIPSIAAARMNARANKLHNTGFAAADAAAI--- 453

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+     +   + +DPPR G D   +  + +Y    ++Y+SCN  +  R
Sbjct: 454 ---------FKDVPYPPDQ-TLLVIDPPRKGCDTNFLEQLLSYAPARVVYVSCNVHTQAR 503

Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLL---VRKPSG 368
           D+ +L            + IE +  FD FP T H+E   +L   V +P G
Sbjct: 504 DVGVLVQGGNINGREVRYEIESIKGFDFFPQTGHVEGVAILNKVVSQPQG 553


>gi|171689586|ref|XP_001909733.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944755|emb|CAP70866.1| unnamed protein product [Podospora anserina S mat+]
          Length = 618

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 45/219 (20%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWV------LAATKGIQGDLLELYCGNGNFSLVLARHF 231
            I+     SF Q N  I     +++       A  +GI+  L++ Y G+G F++  +  F
Sbjct: 409 FIFTNPAGSFFQNNNSILSPFTQYIRDHILPPANKEGIK-YLIDAYSGSGLFTITQSALF 467

Query: 232 -DRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               + ++IA+ S+  AR N   N+++    K +   + E              K ++ +
Sbjct: 468 PGGSIGIDIAEGSIAYARKNAKLNNLDEGQCKFIAADAPEL------------FKSVEGY 515

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL----------- 335
           +     + +DPPR G D + +  +  +    ++Y+SCN  +  RD+ +L           
Sbjct: 516 NPDETVVVLDPPRKGCDASFLSQLLRFGPRRVVYVSCNVHTQARDVGVLVRGEVEGVVDD 575

Query: 336 ----------STTHTIERLALFDQFPYTRHMECGVLLVR 364
                      T + IE L  FD FP T H+E   +L R
Sbjct: 576 TEETDGTERKKTRYEIESLRGFDFFPQTAHVEGVAVLNR 614


>gi|327352820|gb|EGE81677.1| tRNA(M5U54)methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 625

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 27/170 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L ++I+ PS+ AAR N  AN ++N       +      
Sbjct: 447 LLDAYSGSGLFTVTLSPLFLSSLGIDISIPSIAAARMNARANKLHNTGFAAADAAAI--- 503

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+     +   + +DPPR G D   +  + +Y    ++Y+SCN  +  R
Sbjct: 504 ---------FKDVPYPPDQ-TLLVIDPPRKGCDTNFLEQLLSYAPARVVYVSCNVHTQAR 553

Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLL---VRKPSG 368
           D+ +L            + IE +  FD FP T H+E   +L   V +P G
Sbjct: 554 DVGVLVQGGNINGREVRYEIESIKGFDFFPQTGHVEGVAILNKVVSQPQG 603


>gi|115372766|ref|ZP_01460072.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|310823456|ref|YP_003955814.1| hypothetical protein STAUR_6230 [Stigmatella aurantiaca DW4/3-1]
 gi|115370247|gb|EAU69176.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309396528|gb|ADO73987.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 394

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 14/118 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           VLAA     G+ L+ +   G F+L LA    RV AVEI++ +    R N AAN + N+++
Sbjct: 215 VLAAQYA-SGEALDCFSYVGGFALQLATRAQRVTAVEISEAAAAQLRDNAAANRLTNLEV 273

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           V  ++ +F            L+D      RF TI +DPP    + DA    ++ Y  I
Sbjct: 274 VTANAFDF------------LRDAVDEGRRFDTIVLDPPSFAKNKDAVAAALRGYKEI 319


>gi|239611924|gb|EEQ88911.1| tRNA(m5U54)methyltransferase [Ajellomyces dermatitidis ER-3]
          Length = 575

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 27/170 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L ++I+ PS+ AAR N  AN ++N       +      
Sbjct: 397 LLDAYSGSGLFTVTLSPLFLSSLGIDISIPSIAAARMNARANKLHNTGFAAADAAAI--- 453

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     KD+     +   + +DPPR G D   +  + +Y    ++Y+SCN  +  R
Sbjct: 454 ---------FKDVPYPPDQ-TLLVIDPPRKGCDTNFLEQLLSYAPARVVYVSCNVHTQAR 503

Query: 331 DLSIL---------STTHTIERLALFDQFPYTRHMECGVLL---VRKPSG 368
           D+ +L            + IE +  FD FP T H+E   +L   V +P G
Sbjct: 504 DVGVLVQGGNINGREVRYEIESIKGFDFFPQTGHVEGVAILNKVVSQPQG 553


>gi|284990399|ref|YP_003408953.1| deoxyribonuclease/rho motif-related TRAM [Geodermatophilus obscurus
           DSM 43160]
 gi|284063644|gb|ADB74582.1| deoxyribonuclease/rho motif-related TRAM [Geodermatophilus obscurus
           DSM 43160]
          Length = 440

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 26/160 (16%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV-EAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+LY G G F   LA             P+V  A R              + +    TQ
Sbjct: 294 VLDLYAGAGLFGGALA-------------PAVGSAGRVVCVEADEAACAAAQANLAALTQ 340

Query: 272 AMRREREFNR------LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISC 323
           A   + E +       L ++D        I +DPPR+G   A    +  A P  ++Y++C
Sbjct: 341 AEVWQGEVDAEGLIGLLAELDAEP---DVIVLDPPRAGAGTAVSRVLAAAGPRAVVYVAC 397

Query: 324 NPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLL 362
           +P SL RD++  +   + +  L  FD FP T H+EC  LL
Sbjct: 398 DPASLARDVAAFAAGGYRLSGLRGFDAFPMTAHVECVALL 437


>gi|308799347|ref|XP_003074454.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
           (ISS) [Ostreococcus tauri]
 gi|116000625|emb|CAL50305.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
           (ISS) [Ostreococcus tauri]
          Length = 652

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 57/218 (26%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           EW     K +   LL++ CG G   + LA +  +V+ V+I + S++ A  N   N V N 
Sbjct: 439 EWASPNGKSL---LLDVCCGTGTIGMTLAGNVKKVVGVDIVEESIKDAFVNAQLNGVTNT 495

Query: 260 ------------KIVRMSSKEFT------------QAMRREREFNRLKD----------- 284
                       K++R  +                +A   + E +   D           
Sbjct: 496 DWLAGKAEVVIPKVLREYNSRIRPVVDAPKIGTKRKATSNDPELSDGSDDEAAIQAAVTT 555

Query: 285 -IDIHSYRFKTI--FVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTT 338
            ID + Y F  +   VDPPR GL  + +  +   +    ++Y+SCN  ++ +++  L   
Sbjct: 556 IIDENEYEFDDVVAIVDPPRGGLHRSVLTALRREKRLKRLVYVSCNSSTMAKNVIDLCAP 615

Query: 339 HT------------IERLALFDQFPYTRHMECGVLLVR 364
                         ++ +AL D FP+T H+E  VLL R
Sbjct: 616 QGYDGNGGGAPFAPVKAIAL-DLFPHTAHVEAIVLLER 652


>gi|119717125|ref|YP_924090.1| deoxyribonuclease [Nocardioides sp. JS614]
 gi|119537786|gb|ABL82403.1| 23S rRNA m(5)U-1939 methyltransferase [Nocardioides sp. JS614]
          Length = 413

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 104/237 (43%), Gaps = 37/237 (15%)

Query: 150 QLIGRANKTKICLDR------DYVDERLTVA--GRTLIYRQIENSFTQPNAGINVHMLEW 201
           + I RA  T   LDR        V ER+ V   G   ++    + F Q + G    ++E 
Sbjct: 194 RAISRAGTT---LDRHATALSTVVGERVDVPRHGGEHVFAVEADGFWQVHPGAPRILVET 250

Query: 202 VLAATKGIQGDL-LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVN 257
           VL   +  +G+  L+LY G G F+  LA       RVL+VE  + +   AR N+A     
Sbjct: 251 VLDLLQPRRGETALDLYSGVGLFARYLAEAVGPTGRVLSVEGDRTASRHARANLAGLEGV 310

Query: 258 NVK---IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQ 313
           +V+   + R+ +     A            +D+       + +DPPR G     V  +V+
Sbjct: 311 DVECGAVDRVLADPLPPAY---------SSVDL-------VVLDPPREGARALVVEQVVE 354

Query: 314 AYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
             P  + Y++C+P +L RD++      + +  L   D FP T H+E    LV+  SG
Sbjct: 355 RSPRAVAYVACDPAALARDVATFQKFGYHLRSLRALDMFPMTSHVEVVAQLVKSGSG 411


>gi|296425067|ref|XP_002842065.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638322|emb|CAZ86256.1| unnamed protein product [Tuber melanosporum]
          Length = 522

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 19/157 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G F+++  ++   V+ V+IA  S+  A  N AAN++ N + +  +++     
Sbjct: 362 LVDAYCGSGLFTILCGKNLTSVIGVDIAADSIAYASSNAAANNIENARFIAGNAETI--- 418

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                     + ID  S    ++ +DPPR G D   +  +  +    ++Y+SCN  +  R
Sbjct: 419 ---------FESIDFPSTE-TSVIIDPPRKGCDKPFLDQLLEFKPKRVVYVSCNVHTQAR 468

Query: 331 DLSIL----STTHTIERLALFDQFPYTRHMECGVLLV 363
           DL  +     + + ++ +  FD FP T H+E   +L 
Sbjct: 469 DLGYILNGKGSGYRVDEIRGFDFFPQTHHVEGVAILT 505


>gi|149181899|ref|ZP_01860387.1| RNA methyltransferase [Bacillus sp. SG-1]
 gi|148850338|gb|EDL64500.1| RNA methyltransferase [Bacillus sp. SG-1]
          Length = 398

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 132/321 (41%), Gaps = 48/321 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-PNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL +K D +++ + +    P L    I    P  YR + EF    DG    H   + 
Sbjct: 98  YEGQLKQKTDHVKEEIASQGYDPALVLDTIGMDNPWRYRNKMEFTFAPDGSLGLHEQGNF 157

Query: 66  Q----------TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           +            E M ++  M  +  +NA  ++       E LLR  + +  + T +  
Sbjct: 158 RKVISLETCLIASEEM-VETAMEVANWVNAHGLKGYDKDAHEGLLRHLMVRQSFATGEIM 216

Query: 116 QAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
             +  T      L++A  +   R+ +     K  + L  R        DR   ++   +A
Sbjct: 217 LGLFATEAPESNLEEAVSDLVKRVEEKFPKVKSLLWLENRD-----WADRAQSEKTHVLA 271

Query: 175 GRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           GR  IY +++        ++F Q N      +++  +   K  + + +++L+CG G FSL
Sbjct: 272 GRDFIYDEMDGYRFRLWFDTFFQTNPVQAQKLVDLAVEMGKPKKTEKMIDLFCGVGTFSL 331

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     +  +EI + S+E+A+ N   N ++N   +   ++               K I
Sbjct: 332 PFANRVGELAGIEIVESSIESAKRNAEDNGISNTTFLAKDAR---------------KGI 376

Query: 286 D--IHSY-RFKTIFVDPPRSG 303
           D  + S+ R + + +DPPRSG
Sbjct: 377 DQILESFGRPELLLLDPPRSG 397


>gi|257063635|ref|YP_003143307.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
           heliotrinireducens DSM 20476]
 gi|256791288|gb|ACV21958.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
           heliotrinireducens DSM 20476]
          Length = 441

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 25/196 (12%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           Y  ER  VAG+   ++    SF Q N      ++E  L   +  +G ++ +LYCG G F+
Sbjct: 257 YWKER--VAGQP--FKVSAPSFFQVNTEQAETLVELALDGLEIDEGSVVADLYCGVGTFT 312

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           + +A+    V+AVE    SV   R  I       + ++   +          RE   L  
Sbjct: 313 IPMAKTGAEVMAVESYGSSVRDLR-RITEEEGLYIDVIGGDAA---------RELPGLGH 362

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTI 341
           +D        + VDPPR+GLD   +  + A     + Y+SC+P +  RD+  L      +
Sbjct: 363 LD-------ALLVDPPRAGLDATIIPAIAAAGPRRLAYVSCDPATWARDVKRLEDQGFEL 415

Query: 342 ERLALFDQFPYTRHME 357
            +    D FP T H+E
Sbjct: 416 VKATPVDMFPQTHHVE 431


>gi|77464781|ref|YP_354285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides 2.4.1]
 gi|77389199|gb|ABA80384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides 2.4.1]
          Length = 404

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G FSL LA   + V AVE    +   A  +        +K V + +++    
Sbjct: 262 VTDLFGGAGTFSLPLAAGAE-VHAVE--GDAAMMAALDRGWRQAPGLKRVTVETRDL--- 315

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            RR  E + L+       + + + +DPPR+G +  T  + +A  P + ++SCNP +  RD
Sbjct: 316 FRRPLEPDELR-------KTEAVVIDPPRAGAEAQTRALARAAVPVVAFVSCNPVTFARD 368

Query: 332 LSIL-STTHTIERLALFDQFPYTRHME 357
             IL    + ++ + + DQF ++ H+E
Sbjct: 369 ALILVRGGYRLDWVQVVDQFRWSSHVE 395


>gi|330916172|ref|XP_003297319.1| hypothetical protein PTT_07680 [Pyrenophora teres f. teres 0-1]
 gi|311330063|gb|EFQ94576.1| hypothetical protein PTT_07680 [Pyrenophora teres f. teres 0-1]
          Length = 559

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 32/205 (15%)

Query: 185 NSFTQPNAGI----NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEI 239
            SF Q N  I      ++ E +L +T G +   L++ Y G+G F++ L+  F   L ++I
Sbjct: 362 GSFFQNNNSILPVFTQYIREHILPSTPGHKITHLIDAYSGSGLFTITLSSLFKSSLGIDI 421

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  S+E+A  N   N++        SS  F  A    R F+ ++     +     + +DP
Sbjct: 422 SSSSIESASTNARLNNLPE------SSTRFI-AADAARLFSSIESPAEET----VVMLDP 470

Query: 300 PRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL--------------STTHTIER 343
           PR G D++ +  +VQ  P  ++Y+SCN  +  RD+ +L                 + IE 
Sbjct: 471 PRKGCDESFLRQLVQYGPARVVYVSCNVHTQARDIGVLVGGMKGVDGGFGKGEGCYEIES 530

Query: 344 LALFDQFPYTRHMECGVLLVRKPSG 368
           L  FD FP T H+E   +L RK  G
Sbjct: 531 LRGFDFFPQTGHVEGVAVLTRKAGG 555


>gi|326918818|ref|XP_003205683.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Meleagris
           gallopavo]
          Length = 662

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 178 LIYRQIENSFTQPN-AGINV---HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
           L +R   ++F Q N +G  V    + E   AAT  +   LL++ CG G   L LARH  +
Sbjct: 516 LTFRISPDAFFQVNTSGAEVLYQAVRELSQAATNTV---LLDVCCGTGTIGLSLARHVSK 572

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVK 260
           V+ VEI + +VE AR+N A N ++N +
Sbjct: 573 VIGVEIVQKAVEDARWNAAFNGISNCE 599


>gi|323136858|ref|ZP_08071939.1| putative RNA methyltransferase [Methylocystis sp. ATCC 49242]
 gi|322398175|gb|EFY00696.1| putative RNA methyltransferase [Methylocystis sp. ATCC 49242]
          Length = 420

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 18/176 (10%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           ++F Q        +   V+ A  G +  + +L+CG G F+L LA +  RV A + A  +V
Sbjct: 240 SAFLQATQAGEAAIAARVVEAATGAR-RVADLFCGVGAFALRLAEN-ARVAAYDSAADAV 297

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSG 303
           EA      A     ++ +  + ++          F R L   ++ S  F  +  DPPR+G
Sbjct: 298 EA--MMAGARGATGLRPLEGAVRDL---------FTRPLTGQELAS--FDVVVFDPPRAG 344

Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHME 357
                  + Q+  + ++ +SC+  S  RD SI LS  ++   L   DQF ++ H+E
Sbjct: 345 AMAQAKELAQSKVNTVIAVSCSAQSFARDASILLSGGYSARNLTPIDQFRFSPHVE 400


>gi|159046032|ref|YP_001534826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dinoroseobacter shibae
           DFL 12]
 gi|157913792|gb|ABV95225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dinoroseobacter shibae
           DFL 12]
          Length = 414

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 16/176 (9%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             +F Q  A     +L  V  A  G    + +L+ G G F+L LA         E+   +
Sbjct: 241 PGAFLQATAPGEAALLAAVTEAV-GPARRIADLFAGCGTFALPLATR------AEVH--A 291

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE     +AA      K   +S K  T+A    R+  R   +     RF  + +DPPR+G
Sbjct: 292 VEGDADMLAALDAGWRKTPGLS-KVTTEA----RDLFRRPLLPDDLARFGAVVIDPPRAG 346

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357
            +  T  +  A P  I  +SCNP +  RD   L    + +  + + DQF ++ H+E
Sbjct: 347 AEAQTAALASAQPDRIAAVSCNPVTFARDAKTLCDAGYALRWVQVVDQFRWSPHVE 402


>gi|227503489|ref|ZP_03933538.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227075992|gb|EEI13955.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 418

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 15/91 (16%)

Query: 282 LKDIDIHSYRFK------------TIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327
           L+DIDI     K             + +DPPR+G  +  +  + +A P  ++++ C+P +
Sbjct: 309 LRDIDIAVKSAKVEQVAAQLPQPGAVVLDPPRTGAGEQVIRAVAEAKPQAVVHVGCDPAT 368

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHME 357
             RDLS+  S  +  E++AL + FP T H E
Sbjct: 369 FARDLSLWHSAGYKPEKMALINAFPGTHHFE 399


>gi|218670873|ref|ZP_03520544.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli
           GR56]
          Length = 406

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q        M E VLA   G    + +L+ G G FSL LAR   RV AVE    + 
Sbjct: 239 GGFAQATKPAEEAMAELVLAHA-GKAKRIADLFAGTGTFSLRLAR-IGRVHAVEAE--AT 294

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A  + AA     +K V +  ++     RR       K  D+       +  DPPR+G 
Sbjct: 295 ALAALDQAARKTQGLKPVSVEKRDL---FRRPLMTQEFKPFDM-------VVFDPPRAGA 344

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +     + ++    I  +SCNP +L RDL IL    + I  +   DQF +T H+E
Sbjct: 345 EFQCTELARSGVKKIAAVSCNPLTLARDLQILVEGGYRITGVTPIDQFLWTSHVE 399


>gi|238063510|ref|ZP_04608219.1| deoxyribonuclease/rho domain-containing protein [Micromonospora sp.
           ATCC 39149]
 gi|237885321|gb|EEP74149.1| deoxyribonuclease/rho domain-containing protein [Micromonospora sp.
           ATCC 39149]
          Length = 222

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 21/149 (14%)

Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LY G G F+  +A       R+  VE A   V AAR N+      ++  V + +     
Sbjct: 75  DLYGGAGLFAAAVASRVGPAARITLVESAAQGVAAARENL-----RDLPRVEVVAARVET 129

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329
           A+ R R       +D+       + +DPPR+G     V  ++ A P  + Y++C+P +  
Sbjct: 130 ALARRRVTG---PVDL-------VVLDPPRTGAGARVVRDVIAAGPRAVAYVACDPAAFA 179

Query: 330 RDLSILSTTH-TIERLALFDQFPYTRHME 357
           RD+   +     +  L  FD FP T+H+E
Sbjct: 180 RDVRTFADAGWELAALRGFDLFPMTQHVE 208


>gi|269219402|ref|ZP_06163256.1| 23S rRNA methyltransferase/RumA [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211195|gb|EEZ77535.1| 23S rRNA methyltransferase/RumA [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 409

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 80/192 (41%), Gaps = 37/192 (19%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA---RHFDRVL 235
           Y+     F Q +      ++E V+       GD ++ELY G G  +  LA        V 
Sbjct: 237 YQVHAGGFWQVHRAAAASLIELVMRGANVQPGDRVVELYSGAGLLTQPLAVATGEAGAVY 296

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF--- 292
           A+E  + +V+ AR N+      ++   R      T+A R          ID H+      
Sbjct: 297 AMEATREAVDDARANL-----RDLPWAR------TRAAR----------IDAHALEGVNG 335

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALF--- 347
             +  DPPR+GL      M+       I+ +SC+P S+ RD++++       R A F   
Sbjct: 336 DVVVADPPRAGLGTELAAMLGEAKVGRIVLVSCDPASMARDVAVM---RGCGRKATFFEA 392

Query: 348 -DQFPYTRHMEC 358
            D FP T H EC
Sbjct: 393 VDIFPNTHHFEC 404


>gi|115523085|ref|YP_779996.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115517032|gb|ABJ05016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas
           palustris BisA53]
          Length = 411

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 16/152 (10%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G   ++++L+CG G F+L LA    RV A +    ++ A +       +  + I      
Sbjct: 267 GKAKNVVDLFCGVGPFALRLATKA-RVAAYDSEASAIAALQKAAGTPGLKPMTI------ 319

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPD 326
           E     RR     +L+D+D        +  DPPR G       + ++  P I+ +SCN  
Sbjct: 320 EIRDLFRRPLVPQQLEDVD-------AVVFDPPRQGAQAQCQQLAKSRVPLIVAVSCNAA 372

Query: 327 SLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
           +  RD   +L   + I++L   DQF +T H+E
Sbjct: 373 TFARDARLLLDGGYRIDQLTPVDQFRHTPHVE 404


>gi|14043085|gb|AAH07526.1| TRMT2B protein [Homo sapiens]
          Length = 494

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 23/172 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRV 234
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L LA+H  RV
Sbjct: 311 SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRV 369

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E+ + +VE AR+  A N + N +     +++    + + +E       D  S     
Sbjct: 370 LGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE-------DGQSI---V 419

Query: 295 IFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHTIER 343
             V+P R+GL    +  ++ +  I   +++SC        L   ST + IER
Sbjct: 420 AVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCK-------LHGESTRNVIER 464


>gi|306836263|ref|ZP_07469245.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|304567855|gb|EFM43438.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 418

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 15/91 (16%)

Query: 282 LKDIDIHSYRFK------------TIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327
           L+DIDI     K             + +DPPR+G  +  +  + +A P  ++++ C+P +
Sbjct: 309 LRDIDIAVKSAKVEQVAAQLPQPGAVVLDPPRTGAGEQVIRAVAEAKPQAVVHVGCDPAT 368

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHME 357
             RDLS+  S  +  E++AL + FP T H E
Sbjct: 369 FARDLSLWQSAGYKPEKMALVNAFPGTHHFE 399


>gi|254500616|ref|ZP_05112767.1| tRNA (Uracil-5-)-methyltransferase superfamily [Labrenzia
           alexandrii DFL-11]
 gi|222436687|gb|EEE43366.1| tRNA (Uracil-5-)-methyltransferase superfamily [Labrenzia
           alexandrii DFL-11]
          Length = 410

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 16/183 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             FTQ        + E V+A   G    + +L+ G G F+L LAR  + V AVE    ++
Sbjct: 242 GGFTQATLAAEQALSELVVAGV-GKAKTVADLFSGVGTFALRLARTAN-VHAVEGDSAAI 299

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A   ++       +K V    ++     RR      L+        F  +  DPPR+G 
Sbjct: 300 AALDRSL--RKPQGLKKVTFEKRDL---FRRPLVPEELEP-------FAAVVFDPPRAGA 347

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
                 + ++    I+ +SCNP +L RDL IL    + +  +   DQF ++ H+E   +L
Sbjct: 348 QAQAEMLAKSKVKTIVAVSCNPATLARDLRILIDGGYALHTVTPVDQFHFSPHIEAVAVL 407

Query: 363 VRK 365
            R+
Sbjct: 408 KRE 410


>gi|209548166|ref|YP_002280083.1| (uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533922|gb|ACI53857.1| (Uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 416

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             FTQ        M E VLA   G    + +L+ G G FSL LAR   RV AVE    ++
Sbjct: 249 GGFTQATKPAEEAMAELVLAHA-GKAKRIADLFAGAGTFSLRLAR-IGRVHAVEAEAKAL 306

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A  +  AA +   +K V +  ++  +     +EF            +  +  DPPR+G 
Sbjct: 307 AALDH--AARNAPGLKPVTIERRDLFRRPLMTQEFKP----------YDAVIFDPPRAGA 354

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +     + ++    I  +SCNP +L RDL+IL    + I  +   DQF +T H+E
Sbjct: 355 EFQCKELARSSVKKIAAVSCNPLTLARDLAILVEGGYRITGVTPIDQFLWTSHVE 409


>gi|326402755|ref|YP_004282836.1| putative RNA methyltransferase [Acidiphilium multivorum AIU301]
 gi|325049616|dbj|BAJ79954.1| putative RNA methyltransferase [Acidiphilium multivorum AIU301]
          Length = 362

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 31/160 (19%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV----EAARYNIAANHVNNVK--IVR--M 264
           ++E Y G G  +  LA H  RV AVE + P++    EAAR    A  ++  +  + R  +
Sbjct: 222 IVEFYAGIGTLTGALAAHA-RVHAVEGSAPALAALDEAARTGGQAGRIDTERRDLARRPV 280

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISC 323
           ++KE   A                      + +DPP  G       +V+A    I+Y+SC
Sbjct: 281 TAKELAGA--------------------ACVVLDPPFDGAGPQIAPLVEAKVQRIVYVSC 320

Query: 324 NPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           NP++L R+ +  +   + +      DQFP + H+E  V+L
Sbjct: 321 NPEALAREAAPFARAGYRLLASTPIDQFPGSDHLESVVVL 360


>gi|114327982|ref|YP_745139.1| tRNA (Uracil-5-) -methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316156|gb|ABI62216.1| tRNA (Uracil-5-) -methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 413

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 30/206 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
           R     +C  RD V   +T +G ++       +F Q +      ++  + A     +  +
Sbjct: 229 RGRPEVLCQLRDPV---ITFSGHSITAP--PGAFLQASRAAEDAIMAAIEAGLPKKRRKI 283

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +EL+ G G F+L L             KP +       A   V      +++ ++     
Sbjct: 284 VELFAGIGTFTLRL-------------KPGMAYEGDEAAVAAVKRAGFGQITRRDL---F 327

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL 332
           R+  +   L+ +D+       + +DPP +G       + QA  P I+Y+SCNP +L RD 
Sbjct: 328 RQPLQAAELRGVDV-------VILDPPHAGAAAQCATLAQAKVPRIIYVSCNPHALRRDA 380

Query: 333 SILS-TTHTIERLALFDQFPYTRHME 357
           ++L+   + +   ++ DQF ++  +E
Sbjct: 381 TLLAGAGYRLVSASVIDQFLWSTQIE 406


>gi|294675748|ref|YP_003576363.1| tRNA (Uracil-5-)-methyltransferase family protein [Rhodobacter
           capsulatus SB 1003]
 gi|294474568|gb|ADE83956.1| tRNA (Uracil-5-)-methyltransferase family protein [Rhodobacter
           capsulatus SB 1003]
          Length = 407

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 24/179 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q  A     ++++V  AT+G    + +L+ G G F+L LA   + V AVE     +
Sbjct: 239 GAFLQATAAGEAALVDFVRKATEG-AARIADLFAGCGTFALPLAATAE-VHAVESEAAML 296

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR--LKD-IDIHSYRFKTIFVDPPR 301
            A  +         +K +   +++          F R  L D ID    RF  + +DPPR
Sbjct: 297 AALDWGW--RQAQGLKRLTHEARDL---------FRRPLLPDEID----RFDAVVIDPPR 341

Query: 302 SGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
           +G  +A V  + A     + Y+SCNP +  RD   ++     +  + + DQF Y+ H+E
Sbjct: 342 AGA-EAQVAEIAASSLRDLTYVSCNPVTFARDAERLVQAGFALADVIVVDQFRYSAHIE 399


>gi|269956702|ref|YP_003326491.1| deoxyribonuclease/rho motif-related TRAM [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305383|gb|ACZ30933.1| deoxyribonuclease/rho motif-related TRAM [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 447

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 295 IFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           + +DPPR+G   + V  +VQ  P  ++Y++C+P +L RD++  +   + +  L  FD FP
Sbjct: 375 VVLDPPRAGAGRSVVEAIVQRGPARVVYVACDPAALARDVAYFAGHGYELADLRAFDLFP 434

Query: 352 YTRHMECGVLLVR 364
           +T H+E   +L R
Sbjct: 435 HTHHVEAVAVLTR 447


>gi|308506397|ref|XP_003115381.1| hypothetical protein CRE_18824 [Caenorhabditis remanei]
 gi|308255916|gb|EFO99868.1| hypothetical protein CRE_18824 [Caenorhabditis remanei]
          Length = 636

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDR-----VLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSS 266
           LL++ CG G     L ++         + +E+   +VE A+ N   N +    K +   +
Sbjct: 472 LLDICCGTGTIGQCLLKNIQSSQKVFCIGIEMIVEAVEDAKQNAKQNKMEKCCKYIAGKA 531

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV---GMVQAYPHILYISC 323
           ++  ++M+    ++  K+ D+   R   + +DPPR+G+ +  +     ++    ++++SC
Sbjct: 532 EDTFRSMK----YHLPKEFDLRKSRVVGV-LDPPRAGMHEKVILACREMETMRRLIFVSC 586

Query: 324 NPDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHME 357
           +P+S       LCR  S        +I R+   D FP T HME
Sbjct: 587 DPNSAINNIVNLCRPESRKYNGAAFSITRVQPVDMFPQTNHME 629


>gi|89067447|ref|ZP_01154960.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola granulosus
           HTCC2516]
 gi|89047016|gb|EAR53070.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola granulosus
           HTCC2516]
          Length = 386

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 15/182 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q  A     +L+ V AA  G    +++L+ G G FSL LA   + V AVE   P +
Sbjct: 217 GAFLQATADGEAALLDVVRAAV-GDAERVVDLFAGCGTFSLPLAERAE-VHAVETYAPML 274

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A                R +     +     R+  R   I     RF    +DPPR+G 
Sbjct: 275 AALDRGW-----------RETGGGLKRVTTEARDLFRNPLIADDLARFDAAVIDPPRAGA 323

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362
                 + ++    I  ISCNP +  RD  +++     +  + + DQF ++ H+E    +
Sbjct: 324 QAQVAELARSRLTRIAMISCNPVTFARDAQTLVEAGFRLGPITVVDQFRWSTHVELACAV 383

Query: 363 VR 364
            R
Sbjct: 384 TR 385


>gi|56694957|ref|YP_165302.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ruegeria pomeroyi
           DSS-3]
 gi|56676694|gb|AAV93360.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ruegeria pomeroyi
           DSS-3]
          Length = 417

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G F+L LA   + V AVE    S   A  +        +K V   +++    
Sbjct: 272 VADLFAGCGTFALPLAETAE-VHAVE--GESAMTAALDRGWRRAQGLKRVTTEARDL--- 325

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRD 331
            RR    + L         F  + +DPPR+G +     + +A P ++ Y+SCNP +  RD
Sbjct: 326 FRRPLLPDELAA-------FDAVVLDPPRAGAEAQVAELARAKPPVIAYVSCNPVTFARD 378

Query: 332 L-SILSTTHTIERLALFDQFPYTRHME 357
             +++   +++  + + DQF ++ H+E
Sbjct: 379 AKTLVQAGYSLNWVQVVDQFRWSAHVE 405


>gi|172040588|ref|YP_001800302.1| putative SAM-dependent methyltransferase [Corynebacterium
           urealyticum DSM 7109]
 gi|171851892|emb|CAQ04868.1| putative SAM-dependent methyltransferase [Corynebacterium
           urealyticum DSM 7109]
          Length = 416

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 17/180 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           ++F Q +   + +   WV     G    + +LY G G  S  L      +  V++A  + 
Sbjct: 237 DAFWQSHISASAYYARWVADRLNGDLHTVWDLYGGCGALSAGLLGSARNIEIVDVASSAT 296

Query: 245 EAARYNIAANHVNNVK----IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A R   AA+  +  +     VR  S +    + +    + + D+D        + +DPP
Sbjct: 297 HAGRDAFAADRESRAEGAGTAVRFRSSDVGAWLEK---LDEVADLD-------AVVLDPP 346

Query: 301 RSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           R+G     +  V  +  P +++I C+P +  RD  +     + +  + + D F  T H+E
Sbjct: 347 RTGAGADVIQNVAQHRPPRVIHIGCDPATAARDAGMWRDAGYELREMEIVDAFGLTHHVE 406


>gi|281353795|gb|EFB29379.1| hypothetical protein PANDA_009403 [Ailuropoda melanoleuca]
          Length = 631

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 78/188 (41%), Gaps = 43/188 (22%)

Query: 213 LLELYCGNGNFSLVLA---------RH---------FDRVLAVEIAKPSVEAARYNIAAN 254
           +L++ CG G   L LA         RH           RV+ +E+ + +VE AR N   N
Sbjct: 429 VLDVCCGTGTIGLALAPVSLWDGVGRHESVLSWLQRVKRVVGIELCQEAVEDARVNARDN 488

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + NV+     +++    +      +RL    +         +DPPR+GL    +  V+ 
Sbjct: 489 ELTNVEFHCGRAEDLVPTL-----VSRLASQQL------VAILDPPRAGLHSKVILAVRR 537

Query: 315 YPHI---LYISCNPDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL 362
             ++   LY+SCNP +       LCR  S  +  T     +    D FP T H E  +L 
Sbjct: 538 AENLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTPHCEMLLLF 597

Query: 363 --VRKPSG 368
             V  P+G
Sbjct: 598 ERVEHPNG 605


>gi|220922787|ref|YP_002498089.1| (uracil-5)-methyltransferase [Methylobacterium nodulans ORS 2060]
 gi|219947394|gb|ACL57786.1| (uracil-5)-methyltransferase [Methylobacterium nodulans ORS 2060]
          Length = 421

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 37/224 (16%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIE-------------NSFTQPNAGINVHML 199
           GRA +  + L       RL++ G  L+ R+                 F Q        + 
Sbjct: 203 GRARQVLVALAETCDLARLSLHGEVLVERRPPVIRAGRAALVPPPGGFLQATQAGEALLG 262

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E V+ A  G +  + +L+ G G FSL LA         E A  +VE    ++AA      
Sbjct: 263 ELVVTAMGGAK-RIADLFSGAGAFSLRLAE--------ERAVHAVEGDAASLAALD---- 309

Query: 260 KIVRMSSKEFTQAMR----REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA- 314
                 +  FT  +R      R+  R   +     RF  +  DPPR+G +     + ++ 
Sbjct: 310 -----RAARFTPGLRSVTTERRDLFRRPLLAPELDRFDAVVFDPPRAGAEAQAARLAESK 364

Query: 315 YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
            P ++ +SC+  S  RD + +L+  + ++ +   DQF ++ H+E
Sbjct: 365 VPVVVGVSCDAGSFARDAALLLAGGYRLDEVVPIDQFRHSPHVE 408


>gi|114776547|ref|ZP_01451592.1| 23S rRNA (uracil-5-)-methyltransferase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553377|gb|EAU55775.1| 23S rRNA (uracil-5-)-methyltransferase [Mariprofundus ferrooxydans
           PV-1]
          Length = 415

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 20/149 (13%)

Query: 213 LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           + +L+CG GN SL LA      +   E+   SV AA+ N     +N           F Q
Sbjct: 275 IADLFCGIGNLSLPLAVATGAELFGAELNPASVRAAQTNAKRLGIN---------ASFVQ 325

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329
           A       N  +D ++  Y    + + DPPR G       +    P  I+ ISC+P +  
Sbjct: 326 A-------NLFEDFNMEPYIGADLLILDPPRRGAKRICSRITHLMPKQIIMISCDPAAGA 378

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHME 357
           RD  +L    + ++ L   D F Y  H+E
Sbjct: 379 RDGVMLQQQGYQLKALQALDLFAYAGHVE 407


>gi|170740613|ref|YP_001769268.1| (Uracil-5)-methyltransferase [Methylobacterium sp. 4-46]
 gi|168194887|gb|ACA16834.1| (Uracil-5)-methyltransferase [Methylobacterium sp. 4-46]
          Length = 420

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 27/219 (12%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIE------NSFTQPNAGI------NVHMLE 200
           GRA +  + L  D    RL++ G  L+ R+         +   P  G          +L 
Sbjct: 202 GRARQALVALAGDLDLARLSLHGEVLVERRPPLLRVGRAALVPPPGGFLQATRAGEALLG 261

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            ++ A  G    + +L+CG+G FSL LA     V AVE        A        V    
Sbjct: 262 DLVVAGVGDAKRVADLFCGSGAFSLRLAEARG-VHAVEGDA-----AALAALDRAVRGAP 315

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHIL 319
            +R  + E     RR      L        RF  +  DPPR+G +     +  +  P ++
Sbjct: 316 GLRAVTTERRDLFRRPLLAPELD-------RFDAVVFDPPRAGAEAQAARLAGSKVPVVV 368

Query: 320 YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
            +SC+  +  RD ++L +  + ++ +   DQF ++ H+E
Sbjct: 369 GVSCDAGTFARDAALLIAGGYRLDEVVPLDQFRHSPHVE 407


>gi|189189148|ref|XP_001930913.1| tRNA (uracil-5-)-methyltransferase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972519|gb|EDU40018.1| tRNA (uracil-5-)-methyltransferase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 559

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 32/208 (15%)

Query: 185 NSFTQPNAGI----NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEI 239
            SF Q N  I      ++ E +L +T G +   L++ Y G+G F++ L+  F   L ++I
Sbjct: 362 GSFFQNNNSILPVFTQYIREHILPSTPGHKITHLIDAYSGSGLFTITLSSLFKSSLGIDI 421

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  S+E+A  N   N++        SS  F  A    R F  ++     +     + +DP
Sbjct: 422 SSSSIESASTNAKLNNLPE------SSTRFI-AADAARLFASIESPAEET----VVMLDP 470

Query: 300 PRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL--------------STTHTIER 343
           PR G D++ +  +VQ  P  ++Y+SCN  +  RD+ +L                 + IE 
Sbjct: 471 PRKGCDESFLRQLVQYGPARVVYVSCNVHTQARDIGVLVGGMKGVDGGFGKGEGCYEIES 530

Query: 344 LALFDQFPYTRHMECGVLLVRKPSGWHQ 371
           L  FD FP T H+E   +L RK  G  +
Sbjct: 531 LRGFDFFPQTGHVEGVAVLSRKAGGQKK 558


>gi|240141134|ref|YP_002965614.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens
           AM1]
 gi|240011111|gb|ACS42337.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens
           AM1]
          Length = 427

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 19/220 (8%)

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--SFTQPNAGINVHMLEWV 202
           R    +L G  +  ++ +  D V ER   A      R++ +  SF Q        +   V
Sbjct: 200 RGVLTRLAGELDLARLSIHGDVVVERRPPAVGEGPARRVPSPGSFLQATQAGEATLTALV 259

Query: 203 LAA---TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           L A    K     + +L+CG+G F+L LA     V A +    ++ A    +   +    
Sbjct: 260 LEAMDEGKAKVRRVGDLFCGSGPFALTLAAGAREVHAADGEAAAITA----LTRAYRAGA 315

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHI 318
              R+++ E     RR      L  +D        +  DPPR+G +     + ++  P +
Sbjct: 316 GYARITA-EARDLFRRPLLGPELDALD-------AVVFDPPRAGAEAQVRRIAESKVPLV 367

Query: 319 LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           + ++C+P +  RD + L +  + +ER+   DQF ++ H+E
Sbjct: 368 VAVACDPGTFARDAATLIAGGYRLERVTPVDQFAWSAHVE 407


>gi|260948450|ref|XP_002618522.1| hypothetical protein CLUG_01981 [Clavispora lusitaniae ATCC 42720]
 gi|238848394|gb|EEQ37858.1| hypothetical protein CLUG_01981 [Clavispora lusitaniae ATCC 42720]
          Length = 473

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 13/92 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YCG+G FS+  +    +V+ VE++  SV+ A  N   N + N   +   ++E    
Sbjct: 395 LVDAYCGSGLFSITCSTGVSKVIGVEVSADSVKFAERNAKTNKIENASFIVGKAEEI--- 451

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                     K+ID  + R  ++ +DPPR G+
Sbjct: 452 ---------FKNIDTPAAR-TSVILDPPRKGM 473


>gi|146339198|ref|YP_001204246.1| putative RNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146192004|emb|CAL76009.1| putative RNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 411

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 17/182 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SF Q  A     + + VL    G    + +L+CG G F+L LA    RV+A++    S+
Sbjct: 245 GSFLQATAQGEETLAQLVLDRV-GKAKQVADLFCGVGPFALRLASR-GRVIAMDTDAGSI 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A +    A    ++K ++  +++     RR      L+DID        +  DPPR G 
Sbjct: 303 AALQK---AAGTPSLKPIKAEARDL---FRRPLMPPELRDID-------AVVFDPPRQGA 349

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
                 +  +  P I+ +SCN  +  RD+ +L    + +E +   DQF +T H+E    L
Sbjct: 350 QAQAKQLAASKVPVIVAVSCNVTTFARDVRMLIDGGYKLETVVPVDQFRHTPHVELVARL 409

Query: 363 VR 364
           VR
Sbjct: 410 VR 411


>gi|312879698|ref|ZP_07739498.1| (uracil-5)-methyltransferase [Aminomonas paucivorans DSM 12260]
 gi|310782989|gb|EFQ23387.1| (uracil-5)-methyltransferase [Aminomonas paucivorans DSM 12260]
          Length = 360

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 28/157 (17%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN------IAANHVNNVKIVRMSSKE 268
           +LYCG+G             L VEI+  +++ A  N      +          +R     
Sbjct: 220 DLYCGDGASLARWRARGSEALGVEISGSALDRAARNAPGCILLQGTCGQRAPQIRGWLAS 279

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326
           F Q MRR                    +++PPR+GL+     M+   P   + Y+SC   
Sbjct: 280 FPQGMRR-------------------AYLNPPRTGLETEVAAMLTDCPAGRLAYLSCAAR 320

Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           +L RDL +L +  + +  L  +D FP T H+E   LL
Sbjct: 321 TLRRDLELLEAGGYEVVSLTPYDFFPRTDHVETLALL 357


>gi|92116386|ref|YP_576115.1| RNA methyltransferase [Nitrobacter hamburgensis X14]
 gi|91799280|gb|ABE61655.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrobacter hamburgensis
           X14]
          Length = 414

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L LA    RV A +    ++ A +   A  H   +K V+  +++    
Sbjct: 272 IADLFCGVGPFALRLAAGA-RVTAFDSDAGAIGALQKAAATTH--GLKPVKAEARDL--- 325

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            RR      L+DID+  +       DPPR G    +  +  +  P I+ +SC+  +  RD
Sbjct: 326 FRRPLLTQELRDIDVAVF-------DPPRQGAQAQSKQLAASKIPVIVAVSCSIATFARD 378

Query: 332 LSIL-STTHTIERLALFDQFPYTRHME 357
             IL    + +E +   DQF ++ H+E
Sbjct: 379 ARILIDGGYRLETVTPVDQFRHSPHVE 405


>gi|103486680|ref|YP_616241.1| (Uracil-5)-methyltransferase [Sphingopyxis alaskensis RB2256]
 gi|98976757|gb|ABF52908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sphingopyxis
           alaskensis RB2256]
          Length = 399

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 22/183 (12%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           +F QP A     +++ V  A  G    + +L+ G G F+L                 SV+
Sbjct: 235 AFLQPTAAGQAALVDAVARAI-GDASTVADLFAGVGTFAL-----------------SVQ 276

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQA--MRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           A R   AA    +       +    +A      R+  R   +     RF  I +DPPR+G
Sbjct: 277 AGRKVYAAEGARDAIAALAGAANRARALVTTEHRDLFRRPLVPTELNRFGAIILDPPRAG 336

Query: 304 LDDATVGMVQAYPHIL-YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
            ++    +  +   ++ Y+SCNP S  RD  IL    +T++ +    QF ++ H+E    
Sbjct: 337 AEEQVKQLAASAAAVIAYVSCNPASFARDAKILVEGGYTLDWVQPVGQFRWSTHVELAAR 396

Query: 362 LVR 364
             R
Sbjct: 397 FAR 399


>gi|300741361|ref|ZP_07071382.1| putative tRNA (Uracil-5-)-methyltransferase [Rothia dentocariosa
           M567]
 gi|300380546|gb|EFJ77108.1| putative tRNA (Uracil-5-)-methyltransferase [Rothia dentocariosa
           M567]
          Length = 544

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 22/216 (10%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
           V E ++   R   Y+     F Q +      ++  +L   +   G+  L+LY G G F+ 
Sbjct: 324 VTEEVSFGPRRFSYQVSAGGFWQIHRCAPSTLMGTMLTMLRPTLGECALDLYAGAGLFTA 383

Query: 226 VLARHFDR---VLAVEIAKPSVEAARYNIAANHVNN--------VKIVRMSSKEFTQAMR 274
            LA        V++VE +  +   AR N A +  +         V+++R    +  Q ++
Sbjct: 384 ALADAVGSEGTVISVEGSPVTHRDARSNFAPDGPSRSDNSKETRVEVIRGDVAQSLQDLK 443

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
                 ++   D        + +DP R G +   +  +       ILY++C+P +L RD 
Sbjct: 444 AAHSLGQIPTPD-------AVVLDPSREGANRKVLERLNELKPGRILYVACDPAALGRDT 496

Query: 333 SILSTTH-TIERLALFDQFPYTRHMECGVLLVRKPS 367
           +IL      + ++  FD +P T H+E   L  R P+
Sbjct: 497 AILRELGWDLVQVRAFDMYPNTHHVETLALFHRAPA 532


>gi|193699922|ref|XP_001950974.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
           [Acyrthosiphon pisum]
          Length = 645

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 61/115 (53%), Gaps = 14/115 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+L+CG+G  +L LA+   +V+ +E+ K ++  A+ N   N + N + +   +++   +
Sbjct: 387 VLDLFCGSGCLALTLAKKCKQVVGIELIKANIMDAKRNAEINGIVNCEFIAGRTEDILDS 446

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCN 324
           +      N+LK  ++      T+ +DPP +G+    V  ++ +    +++Y+  N
Sbjct: 447 V-----LNKLKGCNV------TVIMDPPLTGVSTGLVRTLRKFKEAINLIYVCSN 490


>gi|262196726|ref|YP_003267935.1| (uracil-5)-methyltransferase [Haliangium ochraceum DSM 14365]
 gi|262080073|gb|ACY16042.1| (Uracil-5)-methyltransferase [Haliangium ochraceum DSM 14365]
          Length = 489

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 18/165 (10%)

Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            G  GD   L+LYCG G  +  LA     V+ VE + PS  AA  + AA       I   
Sbjct: 338 PGADGDRAALDLYCGVGGVAFALAGDGGHVVGVE-SNPSAVAAARDAAAGVGAGANI--- 393

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL--DDATVGMVQAYPHILYIS 322
              +F  A+    +F RL        +   + V+PPR+GL  +     +  A P ++Y+S
Sbjct: 394 ---DF--ALGDAADFGRLS----RDLQPSLVAVNPPRAGLRPEARDALLAAAPPALVYVS 444

Query: 323 CNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRKP 366
           C P SL RD++  +   + IER+   D  P T  +E    L R P
Sbjct: 445 CGPSSLARDVAAFTAAGYEIERVLPVDLMPGTPQIETVATLRRCP 489


>gi|311113443|ref|YP_003984665.1| methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944937|gb|ADP41231.1| methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 544

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 91/216 (42%), Gaps = 22/216 (10%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
           V E ++   R   Y+     F Q +      ++  +L   +   G+  L+LY G G F+ 
Sbjct: 324 VTEEVSFGPRRFSYQVSAGGFWQIHRCAPSTLMGTMLTMLRPTLGECALDLYAGAGLFTA 383

Query: 226 VLARHFDR---VLAVEIAKPSVEAARYNIAANHVNN--------VKIVRMSSKEFTQAMR 274
            LA        V++VE +  +   AR N A +  +         V+++R    +  Q ++
Sbjct: 384 ALADAVGSEGTVISVEGSPVTHRDARSNFAPDGPSRSDNSKETRVEVIRGDVAQSLQDLK 443

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
                 ++   D        + +DP R G +   +  +       ILY++C+P +L RD 
Sbjct: 444 AAHSLGQIPTPD-------AVVLDPSREGANRKVLERLNELKPGRILYVACDPAALGRDT 496

Query: 333 SILSTTH-TIERLALFDQFPYTRHMECGVLLVRKPS 367
           +IL      + ++  FD +P T H+E   L  R P+
Sbjct: 497 AILRELGWDLVQVRAFDMYPNTHHVETLALFHRAPA 532


>gi|163853709|ref|YP_001641752.1| (Uracil-5)-methyltransferase [Methylobacterium extorquens PA1]
 gi|163665314|gb|ABY32681.1| (Uracil-5)-methyltransferase [Methylobacterium extorquens PA1]
          Length = 431

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 19/220 (8%)

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--SFTQPNAGINVHMLEWV 202
           R    +L G  +  ++ +  D V ER   A      R++ +  SF Q        +   V
Sbjct: 204 RGVLTRLAGELDLARLSIHGDVVVERRPPAVGEGPARRVPSPGSFLQATQAGEATLTALV 263

Query: 203 LAA---TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           L A    K     + +L+CG+G F+L LA     V A +    ++ A    +   +    
Sbjct: 264 LEAMDEGKAKVRRVGDLFCGSGPFALTLAAGAREVHAADGEAAAITA----LTRAYRAGA 319

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHI 318
              R+++ E     RR      L  +D        +  DPPR+G +     + ++  P +
Sbjct: 320 GYARITA-EARDLFRRPLLGPELDALD-------AVVFDPPRAGAEAQVRRIAESKVPLV 371

Query: 319 LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           + ++C+P +  RD + L +  + +ER+   DQF ++ H+E
Sbjct: 372 VGVACDPGTFARDAATLIAGGYRLERVTPVDQFAWSAHVE 411


>gi|152977898|ref|YP_001343527.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           succinogenes 130Z]
 gi|150839621|gb|ABR73592.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus
           succinogenes 130Z]
          Length = 383

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 24/161 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           L +L+CG G F L  A           +  +EI+  ++ +A  +     + NV    + +
Sbjct: 239 LWDLFCGVGGFGLHCAAALQANTPDVALTGIEISPSAIYSAALSAEKCGLKNVSFQSLDA 298

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCN 324
             F          N+    D+       + V+PPR G+       +    P  +LY SCN
Sbjct: 299 ANFA--------LNQDDKPDL-------VIVNPPRRGIGKPLAEFLNNLRPQFLLYSSCN 343

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             ++  DL  L T + + ++ LFD FP+T H E   LL  K
Sbjct: 344 AVTMGSDLQSL-THYQMRKIRLFDMFPHTAHYEVLTLLTLK 383


>gi|297182836|gb|ADI18988.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [uncultured delta
           proteobacterium HF0010_10I05]
          Length = 415

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 20/156 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++L+LY G G  SL    H +++ +  I + + +A  +  A  +   +   +++  +  Q
Sbjct: 277 EVLDLYGGVGTLSL---PHAEQIQSCVIVEENPDATHF--AQRNTKEIPHFQITPSKVQQ 331

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLC 329
           A         LK I       +T+ ++PPR+G+ +     +++  P  ++Y+SCN  +  
Sbjct: 332 A---------LKQIGGQ----QTVLLNPPRAGIANQVRKQLLKVKPKRLIYLSCNVSTCA 378

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL  L   + ++    F+ FP T H+E   +L RK
Sbjct: 379 RDLKGLQDYYELKWQQAFNFFPATPHIELLTILERK 414


>gi|294085814|ref|YP_003552574.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665389|gb|ADE40490.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 448

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 14/147 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+ G G  S+ L      +LAVE    S+ A +        N  K          + 
Sbjct: 306 VIDLFAGCGTLSVPLVSQLTHLLAVEQDAASLAALKAG-----ANKAKC-----GARVKT 355

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRD 331
           M+R+     ++ +D+    F    +DPPR+G       + +   P I  +SCNP +  RD
Sbjct: 356 MQRDLMNAPIQPVDLD--HFDAAIIDPPRNGAAAQCAELALSNIPVIAMVSCNPATFARD 413

Query: 332 LSILS-TTHTIERLALFDQFPYTRHME 357
              L+   + ++ + + DQF ++ H+E
Sbjct: 414 AEALTYGGYRLDWMQIIDQFLFSNHLE 440


>gi|304323057|gb|ADM23870.1| putative RNA methyltransferase [Brochothrix thermosphacta]
          Length = 90

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 295 IFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
           I VDPPR G D+  +  +++  P  I+Y+SCNP +L RD  +L    + +E +   D FP
Sbjct: 16  ICVDPPRKGCDEKLLNTLLKMKPRRIVYVSCNPATLARDARVLVDGGYKLEDVQPVDMFP 75

Query: 352 YTRHME 357
            T H+E
Sbjct: 76  QTTHVE 81


>gi|302330887|gb|ADL21081.1| Putative RNA methyltransferase, TrmA family [Corynebacterium
           pseudotuberculosis 1002]
          Length = 439

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNR------LKDIDIHSYRFKTIFV-DPPRSGLDDAT 308
           V++V++   ++K   QA+R      R      L +  I       I V DPPR G   A 
Sbjct: 315 VHSVELSPEAAKAGKQALRNAYAAKRVVFHSALVERSIPGLPKPAIVVLDPPRVGAGQAV 374

Query: 309 VGMVQ-AYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  +  A P  +++I C+P +  RD+S      + + RL L D FP T H E   LLVR 
Sbjct: 375 IDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLVDAFPGTHHFETLGLLVRT 434

Query: 366 PS 367
            S
Sbjct: 435 KS 436


>gi|320593815|gb|EFX06218.1| tRNA methyltransferase [Grosmannia clavigera kw1407]
          Length = 671

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 42/185 (22%)

Query: 213 LLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEF 269
           L++ Y G+G F++ LA       + ++IA+ S+  AR N A N +  +  + +   + + 
Sbjct: 494 LVDAYSGSGLFTITLASTLAGGSIGIDIAEQSIAYARANAALNQLPPDRCRFIAADAAQL 553

Query: 270 TQAMRREREFNRLKDIDI---HSYRFKTIFV-DPPRSGLDDATVGMVQAYP--HILYISC 323
                    F  +   D     S   +T+ V DPPR G D   +  + AY    I+Y+SC
Sbjct: 554 ---------FASVSGGDAAVASSPPDETVVVLDPPRKGCDAPFLRQLLAYAPARIVYVSC 604

Query: 324 NPDSLCRDLSIL------------------------STTHTIERLALFDQFPYTRHMECG 359
           N  +  RD+ +L                         T + IE L  FD FP T H+E  
Sbjct: 605 NVHTQARDVGMLVRGRVDGFAGEGLPRPGQDDVVAHGTRYAIESLRGFDFFPQTAHVEGI 664

Query: 360 VLLVR 364
            +L R
Sbjct: 665 AVLNR 669


>gi|302206330|gb|ADL10672.1| Putative RNA methyltransferase, TrmA family [Corynebacterium
           pseudotuberculosis C231]
          Length = 439

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNR------LKDIDIHSYRFKTIFV-DPPRSGLDDAT 308
           V++V++   ++K   QA+R      R      L +  I       I V DPPR G   A 
Sbjct: 315 VHSVELSPEAAKAGKQALRNAYAAKRVVFHSALVERSIPGLPKPAIVVLDPPRVGAGQAV 374

Query: 309 VGMVQ-AYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  +  A P  +++I C+P +  RD+S      + + RL L D FP T H E   LLVR 
Sbjct: 375 IDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLVDAFPGTHHFETLGLLVRT 434

Query: 366 PS 367
            S
Sbjct: 435 KS 436


>gi|296536690|ref|ZP_06898754.1| tRNA (uracil-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296262981|gb|EFH09542.1| tRNA (uracil-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 411

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 23/187 (12%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             +F Q        ++E VL     + G   ++EL+ G G  S  LA    RV+A E A 
Sbjct: 240 PGAFLQATPQGEAAIVEAVLDGLPKLTGKARIVELHAGLGTLSFPLAAK-ARVIAYEGAP 298

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE--REFNRLKDIDIHSYRFKTIFVDP 299
              EA     AA      KI         QA+RR+  R+   +K+++ H+     + +DP
Sbjct: 299 ---EAVAALDAAARRGGAKI---------QAVRRDLVRQPLSVKELEGHA----ALVLDP 342

Query: 300 PRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           P +G  +    + ++    ++Y+SCNP +L RD  +L +    +++    DQF ++  +E
Sbjct: 343 PFAGAAEQIPALAKSTLSRVIYVSCNPVALARDAKLLHAAGFRVQQATPVDQFLWSAQLE 402

Query: 358 CGVLLVR 364
             V+  R
Sbjct: 403 AVVVFAR 409


>gi|20140271|sp|Q9JP88|RUMA_RHOGE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|7416824|dbj|BAA94073.1| ygcA [Rubrivivax gelatinosus]
          Length = 473

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 110/269 (40%), Gaps = 28/269 (10%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R +L QI+   +  D+ I  ++ H     A     +R   A H  ++ +Q  G     ++
Sbjct: 187 RDRLPQIEL--AAGDEVIALVLRHLEPLSAGDAARLRAFGAEHGVQWWLQPKGPETVHRL 244

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYC 218
                 +   L   G T+ ++  +  FTQ N  IN  +++    L A +  +  +++ +C
Sbjct: 245 DEGGPQLAYSLPEYGVTMPFKPTD--FTQVNPQINRVLVDRAVRLLAPQPHE-RIVDWFC 301

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G GNF+L LAR    V  +E ++  V+ AR           +    +      +      
Sbjct: 302 GLGNFTLPLARRAAAVHGIEGSETLVQRAR-----------ENAAANGLAANTSFAARNL 350

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-------AYP-HILYISCNPDSLCR 330
           F    D  + S       VDPPR G       + +         P  I+Y+SCNP +L R
Sbjct: 351 FEMSADELMTSGAADAWLVDPPREGAFALAKSLAELRGREGWTPPRRIVYVSCNPATLAR 410

Query: 331 DLSILSTTHTIERLA--LFDQFPYTRHME 357
           D  ++        +A  + + FP+T H+E
Sbjct: 411 DAGLIVHLAGFRCVAAGVVNMFPHTAHVE 439


>gi|308276572|gb|ADO26471.1| Putative RNA methyltransferase, TrmA family [Corynebacterium
           pseudotuberculosis I19]
          Length = 438

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNR------LKDIDIHSYRFKTIFV-DPPRSGLDDAT 308
           V++V++   ++K   QA+R      R      L +  I       I V DPPR G   A 
Sbjct: 314 VHSVELSPEAAKAGKQALRNAYAAKRVVFHSALVERSIPGLPKPAIVVLDPPRVGAGQAV 373

Query: 309 VGMVQ-AYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  +  A P  +++I C+P +  RD+S      + + RL L D FP T H E   LLVR 
Sbjct: 374 IDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLVDAFPGTHHFETLGLLVRT 433

Query: 366 PS 367
            S
Sbjct: 434 KS 435


>gi|209966020|ref|YP_002298935.1| RNA (Uracil-5-)-methyltransferase, putative [Rhodospirillum
           centenum SW]
 gi|209959486|gb|ACJ00123.1| RNA (Uracil-5-)-methyltransferase, putative [Rhodospirillum
           centenum SW]
          Length = 449

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 21/168 (12%)

Query: 202 VLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V AA  G  G   + +L+ G+G     LA    RV AVE                    +
Sbjct: 298 VAAALSGCAGAESVADLFAGSGTIGFPLAAR-TRVHAVE---------------GDAQAL 341

Query: 260 KIVRMSSKEFTQAMRRER-EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH 317
             +   +++    +  ER +  R         RF+ + +DPPR+G       + + A P 
Sbjct: 342 ATLDQGARQLAGRLTMERRDLFRDPVTAAELARFQAVVIDPPRAGAQAQAAELARSAVPA 401

Query: 318 ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++ +SCNP +  RD  +++   + +  +   DQF ++ H+E   L  R
Sbjct: 402 VVALSCNPATFVRDARTLVEGGYRLLEVTPIDQFLWSPHLELAALFRR 449


>gi|300858618|ref|YP_003783601.1| hypothetical protein cpfrc_01201 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686072|gb|ADK28994.1| hypothetical protein cpfrc_01201 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 439

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNR------LKDIDIHSYRFKTIFV-DPPRSGLDDAT 308
           V++V++   ++K   QA+R      R      L +  I       I V DPPR G   A 
Sbjct: 315 VHSVELSPEAAKTGKQALRNAYAAKRVVFHSALVERSIPGLPKPAIVVLDPPRVGAGQAV 374

Query: 309 VGMVQ-AYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  +  A P  +++I C+P +  RD+S      + + RL L D FP T H E   LLVR 
Sbjct: 375 IDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLVDAFPGTHHFETLGLLVRT 434

Query: 366 PS 367
            S
Sbjct: 435 KS 436


>gi|183982039|ref|YP_001850330.1| SAM-dependent methyltransferase [Mycobacterium marinum M]
 gi|183175365|gb|ACC40475.1| SAM-dependent methyltransferase [Mycobacterium marinum M]
          Length = 401

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 40/192 (20%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA---RHFDRVL 235
           +Y  +   + QP AG    M  W             +LY G G F+ VL        RVL
Sbjct: 244 VYSGLVADWAQPGAG----MTAW-------------DLYGGAGVFAAVLGDAVGESGRVL 286

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           +V+ A+    +A   +A   +  V++V  S +    A       +   DI +        
Sbjct: 287 SVDTAR--AASAAARVALADLPQVEVVTDSVRRVLAAQ------DGGADIAV-------- 330

Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPRSG     + ++       +++I C   S  RDL +     + ++ + +FD FP 
Sbjct: 331 -LDPPRSGAGREVIDLLADAGVRRVVHIGCEAASFARDLGLYRGHGYGVDAIKVFDAFPL 389

Query: 353 TRHMECGVLLVR 364
           T H+EC  LL R
Sbjct: 390 THHVECVALLTR 401


>gi|114685143|ref|XP_514989.2| PREDICTED: HpaII tiny fragments locus 9C isoform 6 [Pan
           troglodytes]
          Length = 643

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 43/188 (22%)

Query: 213 LLELYCGNGNFSLVLAR------------------HFDRVLAVEIAKPSVEAARYNIAAN 254
           +L++ CG G   L LAR                     RV+ VE+   +VE AR N   N
Sbjct: 436 VLDVCCGTGTIGLALARGPMYSPPWVGRHHAFLFQKVKRVIGVELCPEAVEDARVNAQDN 495

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++NV+     +++    +      +RL    +         +DPPR+GL    +  ++ 
Sbjct: 496 ELSNVEFHCGRAEDLVPTL-----VSRLASQHL------VAILDPPRAGLHSKVILAIRR 544

Query: 315 YPH---ILYISCNPDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLL 362
             +   +LY+SCNP +       LCR  S  +        +    D FP T H E  +L 
Sbjct: 545 AKNLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILF 604

Query: 363 --VRKPSG 368
             V  P+G
Sbjct: 605 ERVEHPNG 612


>gi|254563645|ref|YP_003070740.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens
           DM4]
 gi|254270923|emb|CAX26928.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens
           DM4]
          Length = 427

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 14/145 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG+G F+L LA     V A +    ++ A    +   +       R+++ E     R
Sbjct: 275 DLFCGSGPFALTLAAGAREVHAADGEAAAITA----LTRAYRAGAGYARITA-EARDLFR 329

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R      L  +D        +  DPPR+G +     + ++  P ++ ++C+P +  RD +
Sbjct: 330 RPLLGPELDALD-------AVVFDPPRAGAEAQVRRIAESKVPLVVGVACDPGTFARDAA 382

Query: 334 IL-STTHTIERLALFDQFPYTRHME 357
            L +  + +ER+   DQF ++ H+E
Sbjct: 383 TLIAGGYRLERVTPVDQFAWSAHVE 407


>gi|258653885|ref|YP_003203041.1| deoxyribonuclease/rho motif-related TRAM [Nakamurella multipartita
           DSM 44233]
 gi|258557110|gb|ACV80052.1| deoxyribonuclease/rho motif-related TRAM [Nakamurella multipartita
           DSM 44233]
          Length = 433

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTT-HTIERLALFDQ 349
             I +DPPRSG        +       I+Y++C+P +L RD + L+   + ++ L  FD 
Sbjct: 355 AAIVLDPPRSGAGPRVCASLAGLGPDVIVYVACDPAALARDTAALAAGGYGLDSLRAFDT 414

Query: 350 FPYTRHMEC 358
           FP T H+EC
Sbjct: 415 FPQTHHVEC 423


>gi|319938185|ref|ZP_08012583.1| hypothetical protein HMPREF9488_03419 [Coprobacillus sp. 29_1]
 gi|319806706|gb|EFW03355.1| hypothetical protein HMPREF9488_03419 [Coprobacillus sp. 29_1]
          Length = 434

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 16/153 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L L CG G   L L++H   V+A++     ++ A+ N    H +NV+ +  +  E T  
Sbjct: 298 VLSLNCGIGLLELSLSQH---VVAIDDKNYHIKDAKDNAKFLHKDNVEFICKNIDEATVQ 354

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDL 332
             +++ F      DI   R + +     R+      +  V+    ++Y+S +P SL +DL
Sbjct: 355 QCKKKRF------DIAVIRCEEL----SRAIKQSLVLSKVK---DVIYVSDHPSSLAKDL 401

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             LS+ + IE +   D +PYT  ++  V L RK
Sbjct: 402 DELSSYYQIESIIPLDTYPYTSKLDTIVKLKRK 434


>gi|218532567|ref|YP_002423383.1| (uracil-5)-methyltransferase [Methylobacterium chloromethanicum
           CM4]
 gi|218524870|gb|ACK85455.1| (Uracil-5)-methyltransferase [Methylobacterium chloromethanicum
           CM4]
          Length = 431

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 14/145 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG+G F+L LA     V A +    ++ A    +   +       R+++ E     R
Sbjct: 279 DLFCGSGPFALTLAAGAREVHAADGEAAAITA----LTRAYRAGAGYARITA-EARDLFR 333

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R      L  +D        +  DPPR+G +     + ++  P ++ ++C+P +  RD +
Sbjct: 334 RPLLGPELDALD-------AVVFDPPRAGAEAQVRRIAESKVPLVVGVACDPGTFARDAA 386

Query: 334 IL-STTHTIERLALFDQFPYTRHME 357
            L +  + +ER+   DQF ++ H+E
Sbjct: 387 TLIAGGYRLERVTPVDQFAWSAHVE 411


>gi|297521608|ref|ZP_06939994.1| 23S rRNA methyluridine methyltransferase [Escherichia coli OP50]
          Length = 105

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 276 EREFNRLKDIDIHSYRFKT--------IFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325
           E    RL+   + S +F T        + V+PPR G+       +   A   I+Y SCN 
Sbjct: 7   ELGLTRLQFQALDSTQFATAQGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNA 66

Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            ++ +D+  L   + IER+ LFD FP+T H E   LLV++
Sbjct: 67  QTMAKDVRELPG-YRIERVQLFDMFPHTAHYEVLTLLVKQ 105


>gi|254361472|ref|ZP_04977612.1| possible tRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|153092982|gb|EDN74008.1| possible tRNA methyltransferase [Mannheimia haemolytica PHL213]
          Length = 82

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+       +     P+++Y SCN  S+  D + L T + + ++ LFD F +
Sbjct: 11  VIVNPPRRGIGKLLAEFLNQLGSPYLIYSSCNAVSMANDFTFL-TNYELHKVQLFDMFAH 69

Query: 353 TRHMECGVLLVRK 365
           T H E    LV+K
Sbjct: 70  TAHYETLTFLVKK 82


>gi|148688457|gb|EDL20404.1| RIKEN cDNA 4732479N06, isoform CRA_b [Mus musculus]
 gi|148688458|gb|EDL20405.1| RIKEN cDNA 4732479N06, isoform CRA_b [Mus musculus]
          Length = 493

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 28/197 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           ++F Q N      ML  ++    G+  +  LL++ CG G   L LA+   +V  +E+ + 
Sbjct: 308 DAFFQINTA-GAEMLYRIIGELSGVNSESLLLDICCGTGVIGLSLAQRASQVHGIELVEQ 366

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +VE AR+  A N V N +     ++     + + ++  +L              V+P R+
Sbjct: 367 AVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEKL----------TVAVVNPARA 416

Query: 303 GLDDATVGMV---QAYPHILYISCNPDS--------LC----RDLSILSTTHTIERLALF 347
           GL    V  +   +A   ++++SC P          LC        +L     +      
Sbjct: 417 GLHYRVVRAIRNCRAIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLGDPFVLREAVPV 476

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H E  +L  R
Sbjct: 477 DLFPHTPHCELVLLFTR 493


>gi|66358588|ref|XP_626472.1| TrmA RNA methylase [Cryptosporidium parvum Iowa II]
 gi|46227986|gb|EAK88906.1| TrmA RNA methylase [Cryptosporidium parvum Iowa II]
          Length = 550

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 35/177 (19%)

Query: 213 LLELYCGNGNFSLVL-------ARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           +L++ CG G   L L        R+F  V  + ++ ++ ++ +A+ N     V N K   
Sbjct: 357 ILDICCGVGAIGLTLLDIFRDLGRNFKDVELIGIDCSREAINSAKKNAENIGVENAKYYT 416

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LY 320
            +++                  ++ S       VDPPRSGL  + V  ++    I   +Y
Sbjct: 417 GTAESILPGFLE----------NLPSNNLVIAIVDPPRSGLHSSVVKSLRKMAKIEYLIY 466

Query: 321 ISCNPDSLCRDLSILSTT---HT--IERLALF--------DQFPYTRHMECGVLLVR 364
           +SCN +SL ++   L ++   HT   E   +F        D FP+T+H+E  + L R
Sbjct: 467 VSCNVESLVKNCIELCSSYDPHTDQQEYFPVFFPECAVPVDMFPFTKHVETILYLKR 523


>gi|108762606|ref|YP_633707.1| hypothetical protein MXAN_5568 [Myxococcus xanthus DK 1622]
 gi|108466486|gb|ABF91671.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 383

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G+ L+ +   G F+L LA     V A+EI++ +    R N AAN +NN+ +V  ++ +F 
Sbjct: 212 GEALDCFSYVGGFALQLATRARHVTAIEISEAASAQLRENAAANKLNNLDVVVANAFDF- 270

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
                      L+D      RF TI +DPP    + DA    V+ Y  I
Sbjct: 271 -----------LRDAVDEGKRFDTIVLDPPSFAKNKDAIPAAVRGYKEI 308


>gi|19553107|ref|NP_601109.1| SAM-dependent methyltransferase [Corynebacterium glutamicum ATCC
           13032]
 gi|62390742|ref|YP_226144.1| RNA methyltransferase [Corynebacterium glutamicum ATCC 13032]
 gi|51316625|sp|Q6M4B7|Y1903_CORGL RecName: Full=Uncharacterized RNA methyltransferase Cgl1903/cg2084
 gi|21324673|dbj|BAB99296.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326080|emb|CAF20243.1| PUTATIVE RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC
           13032]
          Length = 412

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 23/154 (14%)

Query: 215 ELYCGNGNFSLVLARHFDRVL-AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +LY G G F+ ++       + +VE++  S EA    +A   V                 
Sbjct: 276 DLYGGVGLFAPIITSKLQAAVHSVELSPGSAEAGEEALAGLPVT------------FHTG 323

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD 331
           R E   ++L   ++       + +DPPR+G   D    + +A P  +++I C+P +  RD
Sbjct: 324 RVEGMASQLPSPNV-------VVLDPPRTGAGSDVLKSIAEAKPQLVIHIGCDPATFARD 376

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++      + +++LA+F+ FP T H E   + VR
Sbjct: 377 VADWKLNGYEMDQLAVFNAFPGTHHFETIGVFVR 410


>gi|163796973|ref|ZP_02190929.1| SAM-dependent methyltransferase [alpha proteobacterium BAL199]
 gi|159177720|gb|EDP62271.1| SAM-dependent methyltransferase [alpha proteobacterium BAL199]
          Length = 454

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 75/189 (39%), Gaps = 22/189 (11%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           R    SF Q        + + V++A +G QG  L+L+CG G  SL               
Sbjct: 283 RPPAGSFLQATRAGETAIRDIVMSAAEG-QGWRLDLFCGVGTLSL--------------- 326

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK---TIFV 297
            P V+ A        V  ++ +R ++       R   E   L D       FK    +  
Sbjct: 327 -PLVDGAPVTAVDGDVQAIRALRAAADAAALGDRLTTEARDLFDRPFEGDEFKGFDVVVF 385

Query: 298 DPPRSGLDDATVGMVQAYPHILYIS-CNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           DPPRSG  +    +  +   ++    CNP S  RD  IL    + +++L   DQF ++ H
Sbjct: 386 DPPRSGAKEQAEALAASSVPVVVAVSCNPASFARDARILIDGGYRLDKLTPIDQFLWSPH 445

Query: 356 MECGVLLVR 364
           +E   +  R
Sbjct: 446 IELAAVFRR 454


>gi|149204354|ref|ZP_01881321.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp.
           TM1035]
 gi|149142239|gb|EDM30286.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp.
           TM1035]
          Length = 407

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 22/178 (12%)

Query: 185 NSFTQPNAGINVHML---EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            +F Q  A     +L   E +LA  + I    ++L+ G G F+L LA+   +V AVE   
Sbjct: 237 GAFLQATAEGEAALLAQTETILAGARRI----VDLFAGCGTFALPLAQRA-QVHAVEGEA 291

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             + A    + A       +  +S++         R+  R   +     R+    +DPPR
Sbjct: 292 EMLAA----LDAGRRGAAGLYPLSTEA--------RDLFRRPLLADELARYDGAVIDPPR 339

Query: 302 SGLDDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
           +G +     + +A  P ++Y+SCNP +  RD  ++++  + +  + + DQF ++ H+E
Sbjct: 340 AGAEAQIAEIARARLPRLVYVSCNPLTFARDAKTLIAAGYVMGPVRVVDQFRWSTHVE 397


>gi|297570912|ref|YP_003696686.1| deoxyribonuclease/rho motif-related TRAM [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931259|gb|ADH92067.1| deoxyribonuclease/rho motif-related TRAM [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 418

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 22/151 (14%)

Query: 213 LLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           L++LY G+G FSLV A       RVLA E  + +   A+ N+ +       +   S++  
Sbjct: 278 LVDLYSGSGLFSLVGANIVGPGGRVLAFEGDERATSYAQQNLRS-------VPWASAQAA 330

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDS 327
           T      R      DI         +  DPPR+GL  DA + + Q+    I  +SC+  S
Sbjct: 331 TIDAENIRSLTDGADI---------VIADPPRAGLGVDAAMMLAQSDARRIALVSCDSAS 381

Query: 328 LCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
           + RD+S +L     +E  A  D FP T  +E
Sbjct: 382 MARDVSALLHAGRRLESFAAVDIFPNTHFVE 412


>gi|145295807|ref|YP_001138628.1| hypothetical protein cgR_1732 [Corynebacterium glutamicum R]
 gi|140845727|dbj|BAF54726.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 412

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 23/154 (14%)

Query: 215 ELYCGNGNFSLVLARHFDRVL-AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +LY G G F+ ++       + +VE++  S EA    +A   V                 
Sbjct: 276 DLYGGVGLFAPIITSKLQAAVHSVELSPGSAEAGEEALAGLPVT------------FHTG 323

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRD 331
           R E   ++L   ++       + +DPPR+G   D    + +A P  +++I C+P +  RD
Sbjct: 324 RVEGMASQLPSPNV-------VVLDPPRTGAGSDVLKSIAEAKPQLVIHIGCDPATFARD 376

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++      + +++LA+F+ FP T H E   + VR
Sbjct: 377 VADWKLNGYEMDQLAVFNAFPGTHHFETIGVFVR 410


>gi|71997438|ref|NP_503353.2| hypothetical protein H24K24.4 [Caenorhabditis elegans]
 gi|50058057|gb|AAF39900.2| Hypothetical protein H24K24.4 [Caenorhabditis elegans]
          Length = 603

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 23/163 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDR-----VLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSS 266
           LL++ CG G     L ++  +      + +E+   +VE A+ N   N +    K +   +
Sbjct: 439 LLDICCGTGTIGQCLLKNIQKSQKVCCIGIEMIAEAVEDAKQNAKQNKMETCCKYIAGKA 498

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV---GMVQAYPHILYISC 323
           ++  ++MR    ++     D+   R   + +DPPR+G+ +  +     ++    ++++SC
Sbjct: 499 EDTFRSMR----YHLPNGFDLRKSRVVGV-LDPPRAGMHEKVILACREMETMRRLIFVSC 553

Query: 324 NPDS-------LCRDLSILST--THTIERLALFDQFPYTRHME 357
            P++       LCR  S   T    ++ R+   D FP T HME
Sbjct: 554 EPNAAISNIVNLCRPSSRKYTGDAFSVTRVQPVDMFPQTNHME 596


>gi|325068656|ref|ZP_08127329.1| RNA methyltransferase [Actinomyces oris K20]
          Length = 88

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALF 347
           R   + +DPPR G     +  V A     I+ ++C+P +L RDL ++L + +T+  ++  
Sbjct: 11  RPDVVVLDPPRQGAGREVIEAVGALGAERIVLVACDPAALARDLGTLLRSGYTLGSMSAL 70

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H E   +L R
Sbjct: 71  DMFPHTHHFETIAVLER 87


>gi|300023485|ref|YP_003756096.1| (uracil-5)-methyltransferase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525306|gb|ADJ23775.1| (Uracil-5)-methyltransferase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 409

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 28/238 (11%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL----TVAGRTLIYR 181
           LLD   R+    +R  L +    +QL       ++ +  D V E L    T A   ++  
Sbjct: 187 LLDGIERKLTPDVRSRLASEASALQL------ARLAIGNDIVVETLPPFLTFATADVVLS 240

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
                F Q  A     M+  +LAA   ++  + +L+CG G F+  LA    +VLA +  +
Sbjct: 241 --PGCFVQAVAEAETEMVRRILAAVGKVK-SVADLFCGVGAFTFPLAAR-AKVLAFDGNQ 296

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P++ A   N AA     +K +    ++  +      E N              I  DPPR
Sbjct: 297 PAIAA--LNAAAKKATGLKPITARVRDLFREPLSPLELNE----------HDAIVFDPPR 344

Query: 302 SGLDDATVGMVQA-YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHME 357
           +G +     + ++    ++  SCNP +L RD   ++   + IE +   DQF Y+ H+E
Sbjct: 345 AGAEAQAQRLARSKVKTVVAASCNPATLARDARHLVDGGYKIESVTPIDQFVYSAHVE 402


>gi|86740031|ref|YP_480431.1| deoxyribonuclease/Rho related TRAM [Frankia sp. CcI3]
 gi|86566893|gb|ABD10702.1| 23S rRNA m(5)U-1939 methyltransferase [Frankia sp. CcI3]
          Length = 488

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 16/155 (10%)

Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LY G G F+  LA       RV+A+E    SV AA  N+A     +++ +R++     
Sbjct: 332 LDLYAGTGLFAAFLAEDVGAAGRVIALESDAASVAAAANNLADLPWVSLRALRVTPATVR 391

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSL 328
             +       R+ D+ +         +DPPR+G   A V  + A+ P  + Y++C+P +L
Sbjct: 392 GVVGTGGPAGRV-DLAV---------LDPPRTGAGPAVVAALLAHRPRAVAYVACDPVAL 441

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
            RDL+  +   + +  L  FD FP T H+EC  LL
Sbjct: 442 GRDLAAAAAAGYDLVVLRAFDLFPMTAHVECVALL 476


>gi|85110766|ref|XP_963621.1| hypothetical protein NCU06780 [Neurospora crassa OR74A]
 gi|18376010|emb|CAB91744.2| related to endo-exonuclease yNucR [Neurospora crassa]
 gi|28925307|gb|EAA34385.1| hypothetical protein NCU06780 [Neurospora crassa OR74A]
          Length = 642

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 43/221 (19%)

Query: 177 TLIYRQIENSFTQPNAGI--------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           + I++    SF Q N  I          H+L   L        +L++ Y G+G F++  +
Sbjct: 429 SFIFQNPAGSFFQNNNSILSPFTDHIRQHILPPSLPEGAKPIKNLIDAYSGSGLFTITQS 488

Query: 229 RHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
             F    + ++IA  S++ AR N   N ++  +   +       A    + F  +  +D 
Sbjct: 489 SLFPGGSIGIDIADKSIDFARRNARLNGLDESQCKFI-------AADAPKLFESVAQLDA 541

Query: 288 HSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS--------- 336
                  + +DPPR G D + +  ++Q  P  ++Y+SCN  +  RD+ +L          
Sbjct: 542 DE---TVVVLDPPRKGCDASFLRQLMQFAPRRVVYVSCNVHTQARDVGVLVRGRVGDTFG 598

Query: 337 -------------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                        + + IE +  FD FP T H+E   +L R
Sbjct: 599 EAFVDPTEGEKKMSRYVIESIRGFDFFPQTGHVEGVAILNR 639


>gi|139439227|ref|ZP_01772669.1| Hypothetical protein COLAER_01683 [Collinsella aerofaciens ATCC
           25986]
 gi|133775251|gb|EBA39071.1| Hypothetical protein COLAER_01683 [Collinsella aerofaciens ATCC
           25986]
          Length = 482

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 21/166 (12%)

Query: 210 QGD-LLELYCGNGNFSLVLARHF-DR-----VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           QGD L++ YCG+G   L  A+   D+     +L VE     +  AR N   N +      
Sbjct: 328 QGDVLMDAYCGSGTIGLCAAKAAQDKGVGIMLLGVERNHAGIADARRNAELNGLTR---- 383

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILY 320
              S  F      +   + + D   ++ R   + +DPPR+G     +    A     I Y
Sbjct: 384 ---SAWFMA----DDATDYILDAADNNERVDVLSIDPPRAGSTPEFLEAACALKPRRITY 436

Query: 321 ISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ISCNP +  RDL  +L   + + ++   D FP+T H E   +L R+
Sbjct: 437 ISCNPVTQERDLHQLLDGGYRLLKITPVDMFPHTDHTETVAVLERR 482


>gi|209881001|ref|XP_002141939.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209557545|gb|EEA07590.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 547

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 33/176 (18%)

Query: 213 LLELYCGNGNFSLVLARHFD---------RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           +L++ CG G+  L L +  +          ++ ++  + S+  A+ N   N   N + + 
Sbjct: 356 ILDICCGVGSIGLYLYKSLETLRAFYPSINLIGIDCVEESISVAKMNAKINGAENTEYIV 415

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LY 320
             +++           N+L  I      F  I VDPPR GL       ++   +I   +Y
Sbjct: 416 GKAEDILP--------NKLSSIRNEDADFLAI-VDPPRCGLHKNVTKALRISSNICSLIY 466

Query: 321 ISCNPDSLCRDLSILSTTHT-----------IERLAL-FDQFPYTRHMECGVLLVR 364
           +SCN  SL  +   L + +            I +L +  D FPYT H+E  V L R
Sbjct: 467 VSCNTKSLLSNCITLCSAYDPQSEDSKIKPFIPKLVIPIDIFPYTNHVETVVYLER 522


>gi|58038580|ref|YP_190544.1| tRNA (Uracil-5-) -methyltransferase [Gluconobacter oxydans 621H]
 gi|58000994|gb|AAW59888.1| tRNA (Uracil-5-) -methyltransferase [Gluconobacter oxydans 621H]
          Length = 441

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 129/325 (39%), Gaps = 39/325 (12%)

Query: 62  MFDQQTKERMRIDYFM---PGSLLI-----NALMIEMMATIRLEPL-------LRAKLFQ 106
           MF    K R R+D+ +   PG ++I     N   ++M     L P        LR  L  
Sbjct: 112 MFQTTPKTRRRMDFAVQRVPGGVIIGLHRRNGDPVDMTECHVLHPAIFGLLAPLREVLGS 171

Query: 107 IDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           +  LT +    +  L       L   A    A RL+ A  AR++ +  I   +   + ++
Sbjct: 172 LGALTGRGSLMVNLLDSGPDLTLQTPAPLTSADRLKLAAFAREHDLSRISWQDPKDLGIE 231

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221
                  +      +I     ++F Q  A     ++  V+     +      +EL+ G G
Sbjct: 232 TVAQSGPVREDFGGVIVSPPPSAFLQATADAEKAIVTAVVDGLPSLNKKDVTVELFAGCG 291

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  ++    RV+A E           N+ A   N +K    S         R+     
Sbjct: 292 TLTFPMSEK-GRVMAYE----------GNLGA--ANCLKAA--SGGRRVDGFHRDLGRQP 336

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTH 339
           L   D+ S R   + +DPP +G    T+ + + A P I+Y+SCNP +L +D   L +   
Sbjct: 337 LLPHDLKSTR--AVVLDPPYAGAGAQTMPLAKSAVPDIVYVSCNPAALEKDGKALWNAGF 394

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
           ++  L + DQF ++  +E  V+L R
Sbjct: 395 SVIGLTIVDQFLWSTEVEAVVVLSR 419


>gi|227504958|ref|ZP_03935007.1| SAM-dependent methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227198467|gb|EEI78515.1| SAM-dependent methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 437

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 295 IFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351
           + +DPPR+G  D  V  + QA P  ++++ C+P +  RDL       + ++RL + + FP
Sbjct: 363 VVLDPPRTGAGDEVVLAVAQAGPRSVVHVGCDPATFARDLKAWKEAGYALKRLTMVNAFP 422

Query: 352 YTRHMECGVLL 362
            T H E   LL
Sbjct: 423 GTHHFETMALL 433


>gi|226227187|ref|YP_002761293.1| hypothetical protein GAU_1781 [Gemmatimonas aurantiaca T-27]
 gi|226090378|dbj|BAH38823.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 468

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 16/186 (8%)

Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F Q NA +   + E V AA T+     +++ Y G G  +  LAR    V+AVE      
Sbjct: 287 AFAQVNARVADALREHVYAAVTQFAPQRVVDGYSGTGLLTERLARAGREVIAVEADAMGA 346

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                 + A      + V   ++     M  ER    L   D+ +     + ++PPR G+
Sbjct: 347 RRTEERLRAAG----EAVAGRAQVVCDLM--ERAIPGLA-TDVQAP--DVVVLNPPRRGV 397

Query: 305 DDATVG-----MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           D          +++    ++Y+SC+P +L RDLS + +   +  +  FD FP T H+E  
Sbjct: 398 DARVTAWLEDEIMRPARGVVYVSCDPATLARDLSRMPSWDIVS-VHCFDMFPQTAHVETV 456

Query: 360 VLLVRK 365
            +L R 
Sbjct: 457 CVLQRS 462


>gi|237836119|ref|XP_002367357.1| hypothetical protein TGME49_050750 [Toxoplasma gondii ME49]
 gi|211965021|gb|EEB00217.1| hypothetical protein TGME49_050750 [Toxoplasma gondii ME49]
 gi|221505959|gb|EEE31594.1| RNA m5u methyltransferase, putative [Toxoplasma gondii VEG]
          Length = 1116

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 26/148 (17%)

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           F RV+ +E+ + +V  A+ N   NH+   V  +   +++    + ++R            
Sbjct: 830 FPRVVGIEMVEEAVRHAKENADRNHMAKYVDFICGKAEDVLPQLLQDR------------ 877

Query: 290 YRFKT---IFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTTHTIER 343
           YR  T     VDPPR+GL    +  +   Q    ++Y+SCNP S+  +   L T     R
Sbjct: 878 YRGCTNLAAIVDPPRAGLHSRVLDAILDFQPIKRLVYVSCNPTSMVANCIKLCTPSPSNR 937

Query: 344 -------LALFDQFPYTRHMECGVLLVR 364
                      D FP+T H E  +LL R
Sbjct: 938 DPFVPMQAVAVDMFPHTLHCEGVLLLCR 965


>gi|167519923|ref|XP_001744301.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777387|gb|EDQ91004.1| predicted protein [Monosiga brevicollis MX1]
          Length = 211

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 32/172 (18%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQ 271
           LL++  G G    + A    RV+  E+ + +VE A++N   N + N       + K   +
Sbjct: 44  LLDICSGTGTIGQLYANRVRRVIGFELVESAVEDAKHNAELNGLTNCSYFAGRAEKTMPE 103

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-------ILYISCN 324
              R +E  R+  I           VDPPR GL +      +A  H       ++Y++CN
Sbjct: 104 VAARVQE-ERVVGI-----------VDPPRCGLRNE---FARALMHGSDLILRLVYVACN 148

Query: 325 PDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             +       LCR  S         + R+   D FP+T HME  +LL+R  +
Sbjct: 149 FKASHTNIVDLCRKTSKRWQGDPFQLVRVRAVDLFPHTPHMEVVLLLLRGAA 200


>gi|329889453|ref|ZP_08267796.1| 23S rRNA uracil-5--methyltransferase rumA [Brevundimonas diminuta
           ATCC 11568]
 gi|328844754|gb|EGF94318.1| 23S rRNA uracil-5--methyltransferase rumA [Brevundimonas diminuta
           ATCC 11568]
          Length = 414

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 24/179 (13%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q +      M+E  + A +G +  + +L+CG G F+  LA   +          + 
Sbjct: 247 GGFLQASPAAEAAMVERAVEAVRGAK-KVADLFCGAGTFTFPLA---EIASVTAADSAAA 302

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A      +    +K +   +++     RR      LK  D        I +DPPR+G 
Sbjct: 303 SIAALKAGLSTAQGLKGIEAQARDL---FRRPLSPYDLKGCD-------AIVLDPPRAGA 352

Query: 305 DDATVGMVQAYPH-----ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
            + T    Q  P      ++ +SCNP +  RD  +L      +E++   DQF ++ H+E
Sbjct: 353 LEQT----QQLPGTKASVVVGVSCNPQTFARDARVLVDAGFRLEKVTPIDQFIWSTHIE 407


>gi|227833269|ref|YP_002834976.1| putative SAM-dependent methyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184253|ref|ZP_06043674.1| putative SAM-dependent methyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454285|gb|ACP33038.1| putative SAM-dependent methyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 430

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 15/97 (15%)

Query: 282 LKDIDIHSYRFKT------------IFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDS 327
           L DID+H    K             + +DPPR+G     V  + A  P  +L+I C+P +
Sbjct: 331 LSDIDVHFRTAKVEQAASQLPRPARVILDPPRTGAGVEVVEAIAAAAPQRVLHIGCDPAT 390

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
             RD++  S   + +ERLA+ + FP T H E   LLV
Sbjct: 391 FARDIAAWSERGYCLERLAMVNAFPGTHHFETLALLV 427


>gi|156102601|ref|XP_001616993.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805867|gb|EDL47266.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 763

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 18/168 (10%)

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-LIGRANKTKICLDRDYVDER 170
           S ++Q I+       L+D  ++   ++   L A+   I+ ++      K+  +R+ V   
Sbjct: 361 SDTEQQILVSFVGFSLNDKAKKALTKISLKLGAKNTSIKGILYNVETNKLKQNRNEV--- 417

Query: 171 LTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELY 217
            T+ G+  IY            N+F QPN  +N  +++ +L   +       Q  + +L+
Sbjct: 418 -TLYGQNCIYHSCGGYTYKLGANTFFQPNQHLNECIVQIILKLVRSYKINAKQSCVYDLF 476

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           CG G +SL L+  F +V++V+ +  +++    N+  N+V NVK   ++
Sbjct: 477 CGIGFYSLPLSDLFGQVISVDYSIDNIKNLEENVKMNNVKNVKCFNLN 524



 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 295 IFVDPPRSGLDDA----TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
           + ++PPR G +        G+   Y  I+YISCN +S  RD++ LS   + +  +   D 
Sbjct: 658 VIINPPRKGCEKVFRRWLRGLCCRY--IIYISCNANSQFRDINHLSNLGYMVREIIPLDT 715

Query: 350 FPYTRHMECGVLL 362
           FP T H E   LL
Sbjct: 716 FPRTPHFETVALL 728


>gi|296283794|ref|ZP_06861792.1| putative RNA methyltransferase [Citromicrobium bathyomarinum JL354]
          Length = 400

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 26/186 (13%)

Query: 185 NSFTQPNAGINVHML----EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
            +F QP A     +L    EW      G    + +L+ G G F+  LA    +VLA E  
Sbjct: 234 GAFLQPTADGEAALLSAAKEWC-----GDAATIADLFSGLGTFAFALAGPA-KVLAAEAD 287

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +           A H+      R S K    ++ R+   + L   +I   RF  + +DPP
Sbjct: 288 R-----------AAHLACQAAARASGKP-VHSLHRDLFRDPLTAAEI--SRFDCVLLDPP 333

Query: 301 RSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHMEC 358
           R+G  +    + Q+    ++YISCNP S  RD   L+     +  L    QF ++ H+E 
Sbjct: 334 RAGARNQADMIDQSSVRRVVYISCNPQSWARDARRLADGDFRLAELRPVGQFRWSTHVEL 393

Query: 359 GVLLVR 364
             L VR
Sbjct: 394 ASLFVR 399


>gi|221484988|gb|EEE23278.1| RNA m5u methyltransferase, putative [Toxoplasma gondii GT1]
          Length = 1116

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 26/148 (17%)

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           F RV+ +E+ + +V  A+ N   NH+   V  +   +++    + ++R            
Sbjct: 830 FPRVVGIEMVEEAVRHAKENADRNHMAKYVDFICGKAEDVLPQLLQDR------------ 877

Query: 290 YRFKT---IFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTTHTIER 343
           YR  T     VDPPR+GL    +  +   Q    ++Y+SCNP S+  +   L T     R
Sbjct: 878 YRGCTNLAAIVDPPRAGLHSRVLDAILDFQPIKRLVYVSCNPTSMVANCIKLCTPSPSNR 937

Query: 344 -------LALFDQFPYTRHMECGVLLVR 364
                      D FP+T H E  +LL R
Sbjct: 938 DPFVPMQAVAVDMFPHTLHCEGVLLLCR 965


>gi|221640698|ref|YP_002526960.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides KD131]
 gi|221161479|gb|ACM02459.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides KD131]
          Length = 404

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G FSL LA   + V AVE    +   A  +        +K V + +++    
Sbjct: 262 VTDLFAGAGTFSLPLAAGAE-VHAVE--GDAAMMAALDRGWRQAPGLKRVTVETRDL--- 315

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            RR  E + L+       R + + +DPPR+G +     +  A  P + ++SCNP +  RD
Sbjct: 316 FRRPLEPDELR-------RTEAVVIDPPRAGAEAQARALACAAVPVVAFVSCNPVTFARD 368

Query: 332 -LSILSTTHTIERLALFDQFPYTRHME 357
            L ++   + ++ + + DQF ++ H+E
Sbjct: 369 ALILMRGGYRLDWVQVVDQFRWSSHVE 395


>gi|325120649|emb|CBZ56204.1| hypothetical protein NCLIV_066290 [Neospora caninum Liverpool]
          Length = 1183

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 20/144 (13%)

Query: 233  RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV+ VE+ + +V  A  N   N +  +V  V   +++    + +ER +    D+      
Sbjct: 906  RVVGVEMVEEAVRNAEQNAERNQLAQDVDFVCGKAEDVLPRLLQER-YRGCTDL------ 958

Query: 292  FKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTTHTIERLAL-- 346
                 VDPPR+GL    +  +   Q    ++YISCNP S+  +   L T     R     
Sbjct: 959  --AAIVDPPRAGLHSRVLEAILDFQPIKRLVYISCNPASMVANCVKLCTPSPSNRDPFVP 1016

Query: 347  -----FDQFPYTRHMECGVLLVRK 365
                  D FP+T H E  +LL R+
Sbjct: 1017 VQAVPVDMFPHTLHCEAVLLLSRQ 1040


>gi|168334686|ref|ZP_02692826.1| RNA methyltransferase, TrmA family protein [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 454

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 20/156 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + ++A    +V+ +EI   +V AA+ N   N + N + +          
Sbjct: 305 VFDLYSGTGTIAQIMALKAKKVVGIEIVAEAVAAAKENAKLNGLENCEFIAG-------- 356

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                  + L  ID        I VDPPR G+    +  +  +    ILYISC   SL R
Sbjct: 357 -------DVLTQIDNADVGPDVIVVDPPRDGIHRKALEKIINFGVAEILYISCKATSLAR 409

Query: 331 DLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           DL   +    H  + L + D F  T H+E  VLL R
Sbjct: 410 DLVAFAEGGYHVAQSLCV-DMFAQTYHVETVVLLKR 444


>gi|169623498|ref|XP_001805156.1| hypothetical protein SNOG_14991 [Phaeosphaeria nodorum SN15]
 gi|111056414|gb|EAT77534.1| hypothetical protein SNOG_14991 [Phaeosphaeria nodorum SN15]
          Length = 577

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 33/172 (19%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK---IVRMSSKEF 269
           L++ Y G+G F++ L+  F   L ++I+  S+++A  N   N++ +     I   ++K F
Sbjct: 396 LIDAYSGSGLFTITLSELFKSSLGIDISSSSIDSATTNARLNNLPSTTTRFIAADAAKLF 455

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327
                  +E                + +DPPR G D++ +  +V+  P  ++Y+SCN  +
Sbjct: 456 ASISSPAKE--------------TVVMIDPPRKGCDESFLRQLVEYGPQRVVYVSCNVHT 501

Query: 328 LCRDLSILSTT--------------HTIERLALFDQFPYTRHMECGVLLVRK 365
             RD+ +L                 + IE L  FD FP T H+E   +L RK
Sbjct: 502 QARDVGVLVGGMMGVDGGFGKGEGCYEIESLRGFDFFPMTGHVEGVAVLRRK 553


>gi|309807711|ref|ZP_07701648.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169042|gb|EFO71123.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
          Length = 84

 Score = 47.8 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 295 IFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + VDPPR+GL+   V  ++   P   +YISCNP +L RDL +LS  + +  +   D  P 
Sbjct: 11  LIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQPVDMMPQ 70

Query: 353 TRHME-CGVLLVRK 365
           T   E    L++RK
Sbjct: 71  TPRWEGIAKLVLRK 84


>gi|308272551|emb|CBX29155.1| hypothetical protein N47_J01360 [uncultured Desulfobacterium sp.]
          Length = 388

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 12/90 (13%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L+ +C +G F+L +A++  +V A +I+K ++E ++ N   N + N+           
Sbjct: 217 GSGLDCFCYSGGFALNMAKNCCQVEAFDISKDAIELSKKNALLNGMENI----------- 265

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +   +  F+RLK  D    +F TI +DPP
Sbjct: 266 -SFEVDNVFDRLKVYDSQKKKFDTIVLDPP 294


>gi|237785642|ref|YP_002906347.1| putative SAM-dependent methyltransferase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758554|gb|ACR17804.1| putative SAM-dependent methyltransferase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 463

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 17/193 (8%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA-R 229
           +  GRT +      +F Q ++G      E V      + G    +LY G G F+ +LA +
Sbjct: 272 SAEGRTFVLPP--TAFWQAHSGAPTRYRELVRELLPEVHGGAAWDLYGGIGLFADILAEK 329

Query: 230 HFDRVLAVEIAKPSVEAAR--YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
               V +VEI K +    R   N  A    +   +R  +    +A    R  N+   +D+
Sbjct: 330 TRGPVDSVEIDKNARTWGRRSLNTLAEPSFSPSSIRFLTSRVDRAWSSLRRNNK-GGVDL 388

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERL 344
                  + +DPPR G     +G +  A+P  +++I+C+P +  RD +  L   + I  +
Sbjct: 389 -------VVLDPPRKGAGTKVIGQIAAAHPEAVVHIACDPATGARDYAAWLDHGYEISSM 441

Query: 345 ALFDQFPYTRHME 357
            + D FP T HME
Sbjct: 442 RVIDAFPGTHHME 454


>gi|312196121|ref|YP_004016182.1| deoxyribonuclease/rho motif-related TRAM [Frankia sp. EuI1c]
 gi|311227457|gb|ADP80312.1| deoxyribonuclease/rho motif-related TRAM [Frankia sp. EuI1c]
          Length = 494

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 296 FVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPY 352
            +DPPR+G   D    ++   P  + Y++C+P +L RDL++ +S  + +  +  FD FP 
Sbjct: 421 VLDPPRAGAGVDVLTALLGLRPRAVAYVACDPVALGRDLAVAVSCGYRVSDVRAFDLFPM 480

Query: 353 TRHMECGVLLV 363
           T H+EC   LV
Sbjct: 481 TAHIECVARLV 491


>gi|213023407|ref|ZP_03337854.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213612570|ref|ZP_03370396.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 60

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 318 ILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           I+Y+SCNP +L RD  ++++  + + RLA+ D FP+T H+E  VL  R
Sbjct: 12  IVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 59


>gi|256825305|ref|YP_003149265.1| 23S rRNA methyluridine methyltransferase [Kytococcus sedentarius
           DSM 20547]
 gi|256688698|gb|ACV06500.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Kytococcus sedentarius DSM 20547]
          Length = 413

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 67/175 (38%), Gaps = 53/175 (30%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIA----------------KPSVEAARYNIAANHVNN 258
           +LYCG G F+L  A      + VEIA                +P   AAR+ +A    ++
Sbjct: 256 DLYCGVGGFALHAAAAGTEAVGVEIAADAVRGARAGAAALTQRPGGGAARFVVA--DASD 313

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH- 317
              V  ++     AM                       V+PPR GL      M+ A    
Sbjct: 314 PAAVLAAAGTDRDAM----------------------VVNPPRRGLGPDLPAMLDARSPA 351

Query: 318 ---------ILYISCNPDSLCRDLSILSTTHTIERLA-LFDQFPYTRHMECGVLL 362
                    ++Y SCNP +L  DL+ L   H   R A LFD FP T H E  VLL
Sbjct: 352 ADPASALRTLVYSSCNPATLATDLAGLP--HWQVRSARLFDMFPNTDHAEVVVLL 404


>gi|84500744|ref|ZP_00998993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola batsensis
           HTCC2597]
 gi|84391697|gb|EAQ04029.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola batsensis
           HTCC2597]
          Length = 405

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G F+L LA     V+AVE  +  +EA   +        +K +   +++    
Sbjct: 264 VADLFAGIGTFALPLA-ETSEVVAVEGDRAMMEA--LDRGWRGTQGLKKIETVTRDL--- 317

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            R     + L+        F  + +DPPR+G +     +  A  P I ++SCNP +  RD
Sbjct: 318 FRNPLLADELR-------HFDAVVIDPPRAGAEAQVAELADAGVPVIAHVSCNPVTFARD 370

Query: 332 LS-ILSTTHTIERLALFDQFPYTRHME 357
            + ++++ + +  + + DQF ++ H+E
Sbjct: 371 AARLVASGYRMGPVTVVDQFRWSAHVE 397


>gi|159465141|ref|XP_001690781.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii]
 gi|158279467|gb|EDP05227.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii]
          Length = 746

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 178 LIYRQIENSFTQPN---AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
           L ++    SF Q N   A +   ++    A   G Q  L++LYCG G  SL LA     V
Sbjct: 614 LTFQISAASFFQTNTAQAAVLYDVVRQAAALRPGRQDSLVDLYCGTGTISLSLAPECKSV 673

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L VE    +V  AR N   N  +N   V   +          R+ +RL + D   YR   
Sbjct: 674 LGVEAVAAAVSDARLNARLNGASNALFVAAGA----------RDLDRLCNGDDAPYRLTA 723

Query: 295 I 295
           +
Sbjct: 724 V 724


>gi|46447632|ref|YP_008997.1| putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|51316627|sp|Q6M9M7|Y1998_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1998
 gi|46401273|emb|CAF24722.1| putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 383

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 87/209 (41%), Gaps = 23/209 (11%)

Query: 166 YVDERLTVAGRTLIYRQIEN---SFTQPN-AGINVHMLEWVLAATKGI---QGDLLELYC 218
           + D+   V G   ++   +     F   N A  N+ + E +L   K     +  ++E + 
Sbjct: 188 FTDKWEKVWGEPYLWESFDGVKICFQPSNFAQANLDLFEKLLKKVKSWVREKAKVVEFFA 247

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L +A     +   EI   S E   Y  A   +++     +S K        +  
Sbjct: 248 GVGTIGLSVAAKCSWIKCEEINPHSKECFYY--AKQQLSS----EISQKIMFYTGSADEN 301

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQ-AYPHILYISCNPDSLCRDL-SIL 335
            N L+  D       T+ VDPPR GL    + G+ Q +   ++Y+SC  DS  ++  +++
Sbjct: 302 LNLLQGAD-------TVIVDPPRKGLSRKFIEGLTQSSVDQLIYVSCGWDSFKKNKETLI 354

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           S    +++L  +  FP + H+E   L  R
Sbjct: 355 SQGWNLKKLEGYSLFPGSEHIELLTLFER 383


>gi|315500113|ref|YP_004088916.1| (uracil-5)-methyltransferase [Asticcacaulis excentricus CB 48]
 gi|315418125|gb|ADU14765.1| (Uracil-5)-methyltransferase [Asticcacaulis excentricus CB 48]
          Length = 419

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SF Q +      M+  V  A  G +  + +L+CG G F+  LA     V A + A  +V
Sbjct: 252 GSFLQASPHSEADMVALVKDAVAGTK-RVADLFCGAGTFTFPLAETAS-VYAADGAGGAV 309

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A +  I       +K + + +++  +A     E             +  +  DPPR+G 
Sbjct: 310 RALKAAI--GRAPGLKPITVEARDLFRAPVVAEEMA----------GWDAVVFDPPRAGA 357

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRHME 357
           +     + ++    ++ +SCN  +  RD  IL+     ++R+   DQF ++ H+E
Sbjct: 358 EAQAQQIARSQVARVVGVSCNIQTFARDAKILTEAGFQLDRVTPIDQFLWSGHVE 412


>gi|114769865|ref|ZP_01447475.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [alpha proteobacterium
           HTCC2255]
 gi|114549570|gb|EAU52452.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [alpha proteobacterium
           HTCC2255]
          Length = 407

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 37/158 (23%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-----------AANHVNNVKI 261
           +++L+ G G F+L ++           +K +V A   ++           AA  ++++K 
Sbjct: 267 VVDLFAGCGTFALPIS-----------SKATVHALEGDVNMIAALDSGWRAAGGLHDIK- 314

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILY 320
                 E     RR    +  K ID        I +DPPR+G     V + +A    I +
Sbjct: 315 -----SETRDLFRRPLMPDEFKKID-------AIVIDPPRAGAVSQVVEIAKANVGRIAF 362

Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +SCNP +  RD SIL +  + ++ + + DQF +  H+E
Sbjct: 363 VSCNPATFARDASILCNNGYNLDWVQIIDQFLWNPHIE 400


>gi|332526108|ref|ZP_08402246.1| 23S rRNA m(5)U1939 methyltransferase [Rubrivivax benzoatilyticus
           JA2]
 gi|332109951|gb|EGJ10579.1| 23S rRNA m(5)U1939 methyltransferase [Rubrivivax benzoatilyticus
           JA2]
          Length = 473

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 111/268 (41%), Gaps = 26/268 (9%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R +L QI+   +  D+ +  ++ H     A     +R   A H  ++ +Q  G     ++
Sbjct: 187 RDRLPQIEL--AAGDEVVALVLRHLEPLSAGDAARLRAFGAEHGVQWWLQPKGPETVHRL 244

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
                 +   L   G T+ ++  +  FTQ N  IN  +++  +        + +++ +CG
Sbjct: 245 DDGGPQLSYSLPEYGVTMPFKPTD--FTQVNPQINRVLVDRAVRLLDPKPHERVVDWFCG 302

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            GNF+L LAR    V  +E ++  V+ AR         +       +   + A R   E 
Sbjct: 303 LGNFTLPLARRAAAVHGIEGSETLVQRAR---------DNAAANGLAANTSFAARNLFEM 353

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-------AYP-HILYISCNPDSLCRD 331
           +   D  + S       VDPPR G       + +         P  I+Y+SCNP +L RD
Sbjct: 354 S--ADELMTSGAADAWLVDPPREGAFALAKSLAELRGREGWTPPRRIVYVSCNPATLARD 411

Query: 332 LSILSTTHTIERLA--LFDQFPYTRHME 357
             ++        +A  + + FP+T H+E
Sbjct: 412 AGLIVHLAGFRCVAAGVVNMFPHTAHVE 439


>gi|330466498|ref|YP_004404241.1| deoxyribonuclease/rho motif-related TRAM [Verrucosispora maris
           AB-18-032]
 gi|328809469|gb|AEB43641.1| deoxyribonuclease/rho motif-related TRAM [Verrucosispora maris
           AB-18-032]
          Length = 422

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 19/134 (14%)

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           RV  VE A   V AAR N+      ++  V + +     A+ R R       +D+     
Sbjct: 302 RVTLVEAAGDGVAAARENL-----RDLAQVEVVAARVETALARRRITG---PVDV----- 348

Query: 293 KTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTTH-TIERLALFDQ 349
             + +DPPRSG     V  +V A P  + Y++C+P +  RDL + +     +  L  +D 
Sbjct: 349 --VVLDPPRSGAGARVVRDVVAAGPRAVAYVACDPAAFARDLRVFTDLGWRLAALRGYDL 406

Query: 350 FPYTRHME-CGVLL 362
           FP T+H+E  G+LL
Sbjct: 407 FPMTQHVELVGLLL 420


>gi|257456213|ref|ZP_05621410.1| tRNA (Uracil-5-)-methyltransferase family protein [Treponema
           vincentii ATCC 35580]
 gi|257446299|gb|EEV21345.1| tRNA (Uracil-5-)-methyltransferase family protein [Treponema
           vincentii ATCC 35580]
          Length = 380

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 11/148 (7%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+ Y G G FS  L      +  VE  + ++ AA+ N+           R      + A
Sbjct: 234 ILDFYAGVGTFSAFLTEKAAELHLVEHNERALLAAQQNLDRIIAEKNSSCRCFFHTVSDA 293

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQA-YPHILYISCNPDSLCR 330
                      DI     ++  + +DPPR G+    +  + QA  P I Y+SCNP +  R
Sbjct: 294 --------GWPDIPAAKLKYDAVIIDPPRQGVHSRVLTYLGQAKIPRIHYVSCNPATFVR 345

Query: 331 DLSILST-THTIERLALFDQFPYTRHME 357
           D   L++  +      LFD +P T H E
Sbjct: 346 DAKKLTSLGYRFTEYRLFDFYPQTHHCE 373


>gi|260752395|ref|YP_003225288.1| (uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551758|gb|ACV74704.1| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 397

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348
           RF+ I +DPPR+G  +    + +     I+Y+SCNP +  RD  ++L +   +  +    
Sbjct: 321 RFECIILDPPRAGAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLESGWVLHWVKPVG 380

Query: 349 QFPYTRHME 357
           QFP++ H+E
Sbjct: 381 QFPWSLHVE 389


>gi|146278673|ref|YP_001168832.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase-like protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556914|gb|ABP71527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 404

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 291 RFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
           R + + +DPPR+G +     + +A  P I ++SCNP +  RD ++L    + ++ + + D
Sbjct: 327 RAEAVVIDPPRAGAEAQCAALARARVPVIAFVSCNPVTFARDAALLVRAGYRLDWVQVVD 386

Query: 349 QFPYTRHME 357
           QF ++ H+E
Sbjct: 387 QFRWSAHVE 395


>gi|114762227|ref|ZP_01441695.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Pelagibaca bermudensis
           HTCC2601]
 gi|114545251|gb|EAU48254.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp.
           HTCC2601]
          Length = 407

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q        +L  V  A +G +  +++L+ G G F+L LA    RV AVE  K   
Sbjct: 237 GAFLQATPEGEAALLAAVREAVRGAR-HVVDLFAGCGTFALPLAEEM-RVHAVEGDKGMT 294

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A   +        +K V   +++  +        N L   D+   RF    +DPPR+G 
Sbjct: 295 AA--LDKGWRMAEGLKHVTHEARDLFR--------NPLLPEDLE--RFDAAVIDPPRAGA 342

Query: 305 DDATVGMVQA-YPHILYISCNPDSL-CRDLSILSTTHTIERLALFDQFPYTRHME 357
           +     + +A  P I ++SCNP +      ++ +  + I+ L + DQF ++ H+E
Sbjct: 343 EAQVAELARAGIPRIAFVSCNPVTFARDAAALDAAGYVIDWLQVVDQFRWSTHVE 397


>gi|330876375|gb|EGH10524.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 364

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D +  RL      L +R     F Q NA +N  M+E  L      + + +++L+CG GNF
Sbjct: 261 DTLGYRLEPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNF 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           +L LA     V+AVE     VE A  N  +N ++NV+  R
Sbjct: 319 ALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFR 358


>gi|307108166|gb|EFN56407.1| hypothetical protein CHLNCDRAFT_22531 [Chlorella variabilis]
          Length = 486

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 18/151 (11%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIE-NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
           +DR +  +R+       +  Q+  NSF Q N       L  ++AA  G++    LL+LYC
Sbjct: 290 VDRLWTQKRVGCLPAAAVALQVSANSFFQTNT-RQAEALYGLVAAAAGLRATDVLLDLYC 348

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G+  L LA     V  VE++  +V  A  N A N + N   ++   ++          
Sbjct: 349 GTGSIGLTLAAACRHVHGVEVSAAAVRDAERNAALNGIANASFLQGDLQKLQLQGLLPHP 408

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
                           + VDP R GL  A V
Sbjct: 409 --------------DVVVVDPARPGLSPAVV 425


>gi|86356556|ref|YP_468448.1| RNA-methyltransferase protein [Rhizobium etli CFN 42]
 gi|86280658|gb|ABC89721.1| probable RNA-methyltransferase protein [Rhizobium etli CFN 42]
          Length = 416

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q        M E VLA   G    + +L+ G G FSL LAR   RV AVE    + 
Sbjct: 249 GGFAQATKPAEEAMAELVLAHA-GKAKRIADLFAGAGTFSLRLAR-IGRVHAVEAE--AA 304

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A  + AA     +K V +  ++     RR      LK  D+       +  DPPR+G 
Sbjct: 305 ALAALDQAARKTQGLKPVSVEKRDL---FRRPLMTQELKPYDM-------VVFDPPRAGA 354

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +     + ++    I  +SCNP +L RDL+ L    + I ++   DQF +T H+E
Sbjct: 355 EFQCKELARSGVKKIAAVSCNPLTLARDLATLVEGGYRITKVTPIDQFLWTSHVE 409


>gi|159118344|ref|XP_001709391.1| HpaII tiny fragments locus 9c [Giardia lamblia ATCC 50803]
 gi|157437507|gb|EDO81717.1| TRMT2A-like protein [Giardia lamblia ATCC 50803]
          Length = 705

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 38/181 (20%)

Query: 212 DLLELYCGNGNFSLVLAR------------HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +LL++ CG+G     LA+            H + +  ++ ++ ++  A +N + N  +N 
Sbjct: 517 ELLDICCGSGVIGQCLAQVVLKKMINVQNLHVN-IKGLDCSQNAIWNAEFNASENFKDNP 575

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPH 317
            I  +      +A +    F+    I I         +DPPR+G+  + +  ++     +
Sbjct: 576 NISAL--YICGKAEQTPEYFSGSAKIGI---------LDPPRTGVFQSVLTAIRHSTLEY 624

Query: 318 ILYISCNPDSLCR---DLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVRK 365
           ++YISCNP ++ +   DLSI+ST            +E L  F+ FP   H+E   +L R 
Sbjct: 625 LIYISCNPKTMSQNIIDLSIVSTDSDLSKRTAPFYVESLVGFNMFPGCEHVETVAILHRC 684

Query: 366 P 366
           P
Sbjct: 685 P 685


>gi|241762027|ref|ZP_04760111.1| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373493|gb|EER63080.1| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 397

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348
           RF+ I +DPPR+G  +    + +     I+Y+SCNP +  RD  ++L     +  +    
Sbjct: 321 RFECIILDPPRAGAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVG 380

Query: 349 QFPYTRHME 357
           QFP++ H+E
Sbjct: 381 QFPWSLHVE 389


>gi|85717530|ref|ZP_01048475.1| possible hypothetical RNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695647|gb|EAQ33560.1| possible hypothetical RNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 435

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 15/153 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG G F+L LA    RV A +    +   A    AA+  + +K +R  +++     R
Sbjct: 295 DLFCGVGPFALRLAVRA-RVAAFD--SNAAAVAALQKAADTASGLKPIRAETRDL---FR 348

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R      L+DID        +  DPPR G +  +  +  +  P I+ +SC+  +  RD  
Sbjct: 349 RPLVAQELRDID-------AVIFDPPRQGAEAQSKHLAASRIPVIVAVSCSAATFTRDAR 401

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +L    +++E +   DQF ++ H+E     VR+
Sbjct: 402 VLIDGGYSLETVTPVDQFRHSPHVELVAKFVRR 434


>gi|332559676|ref|ZP_08413998.1| RNA SAM-dependent methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|332277388|gb|EGJ22703.1| RNA SAM-dependent methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 404

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G FSL LA   + V AVE    +   A  +        +K V + +++    
Sbjct: 262 VTDLFAGAGTFSLPLAAGAE-VHAVE--GDAAMMAALDRGWRQAPGLKRVTVETRDL--- 315

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            RR  E + L+       R + + +DPPR+G +     + +A  P + ++SCNP +  RD
Sbjct: 316 FRRPLEPDELR-------RTEAVVIDPPRAGAEAQARALARAAVPVVAFVSCNPVTFARD 368

Query: 332 -LSILSTTHTIERLALFDQFPYTRHME 357
            L ++   + ++ + + DQF ++ H+E
Sbjct: 369 ALILMRGGYRLDWVQVVDQFRWSSHVE 395


>gi|4511979|gb|AAD21539.1| RNA methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 397

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348
           RF+ I +DPPR+G  +    + +     I+Y+SCNP +  RD  ++L     +  +    
Sbjct: 321 RFECIILDPPRAGAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVG 380

Query: 349 QFPYTRHME 357
           QFP++ H+E
Sbjct: 381 QFPWSLHVE 389


>gi|59803122|sp|Q9X3W2|Y1179_ZYMMO RecName: Full=Uncharacterized RNA methyltransferase ZMO1179
          Length = 397

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348
           RF+ I +DPPR+G  +    + +     I+Y+SCNP +  RD  ++L     +  +    
Sbjct: 321 RFECIILDPPRAGAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVG 380

Query: 349 QFPYTRHME 357
           QFP++ H+E
Sbjct: 381 QFPWSLHVE 389


>gi|255325118|ref|ZP_05366224.1| TRAM domain protein [Corynebacterium tuberculostearicum SK141]
 gi|255297683|gb|EET76994.1| TRAM domain protein [Corynebacterium tuberculostearicum SK141]
          Length = 407

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPH-ILYISCNPDSLCRDLS 333
           E +  +++ +     +   + +DPPR+G  +D    +  A P  ++++ C+P +  RDL 
Sbjct: 315 EVKSAKVEQVAAQLPKPGAVVLDPPRTGAGEDVIRSVAAAAPQTVVHVGCDPATFARDLG 374

Query: 334 ILST-THTIERLALFDQFPYTRHME 357
             +   + IE++AL + FP T H E
Sbjct: 375 YWNQHGYGIEKMALINAFPGTHHFE 399


>gi|224418311|ref|ZP_03656317.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
          Length = 145

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 23/142 (16%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           E  L  KVD  +Q++    +    I       +R R E  I+   D + + M  ++ K+ 
Sbjct: 17  ECSLESKVDYAKQLL---GINQCDIVSLRQDSFRARCELGIFFKDDKINYAM--RKGKQF 71

Query: 71  MRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           + I+           F+P  +L   L  E           R KLF I+ L++Q+D+ ++T
Sbjct: 72  VCIENCCNLLESLQKFLP--VLKKKLNQEFFKD------FRQKLFAIEVLSTQNDEILLT 123

Query: 121 LIYHRLLDDAWRECAIRLRDAL 142
           LIYH+ L++ W E A  L+ AL
Sbjct: 124 LIYHKKLNETWLENAKELKKAL 145


>gi|283856417|ref|YP_162914.2| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775417|gb|AAV89803.2| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 384

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 291 RFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348
           RF+ I +DPPR+G  +    + +     I+Y+SCNP +  RD  ++L     +  +    
Sbjct: 308 RFECIILDPPRAGAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVG 367

Query: 349 QFPYTRHME 357
           QFP++ H+E
Sbjct: 368 QFPWSLHVE 376


>gi|319441605|ref|ZP_07990761.1| putative SAM-dependent methyltransferase [Corynebacterium variabile
           DSM 44702]
          Length = 446

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 21/148 (14%)

Query: 215 ELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +LY G+G FS  L       +V  V++A  +  A    +A     +V+ V          
Sbjct: 305 DLYGGSGVFSAALTAALPGAQVDCVDVASEATAAGEQALADR---DVRFVAGDVASHIAE 361

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           +R  R                 + +DPPR+G  D  +  V A+   H+L+I C+P +  R
Sbjct: 362 LRGGR-------------GLAAVVLDPPRTGAGDRVLEEVAAHRPAHVLHIGCDPATAAR 408

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHME 357
           D + L S  +    L   D F  T H+E
Sbjct: 409 DAATLASAGYRPVSLTAVDAFGLTHHVE 436


>gi|68073839|ref|XP_678834.1| SAM-dependent methyltransferase related to
           tRNA(uracyl-5-)-methyltransferase [Plasmodium berghei
           strain ANKA]
 gi|56499427|emb|CAI04980.1| SAM-dependent methyltransferase related to
           tRNA(uracyl-5-)-methyltransferase, putative [Plasmodium
           berghei]
          Length = 673

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 21/178 (11%)

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI---GRANKTK 159
           K   I Y  S S+  I+       L +  ++  I + + L  +   I+ I      NK K
Sbjct: 353 KSVDIKYSVSNSENQILINFIGCTLTNEAKKNMINIANNLAIKNKSIKGILYNVETNKLK 412

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQG 211
                  + + +T+ G+  IY    N        +F QPN  +N  +++ V    +  + 
Sbjct: 413 ------QIKKEITLFGQNYIYHTYNNYTYKLGANTFFQPNQYLNECIIQIVFKLIQNYKS 466

Query: 212 D----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                + +L+CG G +SL L+  F+ V++V+ +  +++    NI  N++ NVK + ++
Sbjct: 467 SQTQCVFDLFCGIGFYSLPLSSMFNHVISVDYSIENIKNLEENIKLNNIQNVKPIHIN 524


>gi|304393473|ref|ZP_07375401.1| RNA methyltransferase [Ahrensia sp. R2A130]
 gi|303294480|gb|EFL88852.1| RNA methyltransferase [Ahrensia sp. R2A130]
          Length = 417

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 19/153 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G F+  L+           A   V A   ++AA     VK +  + ++  +A
Sbjct: 268 VADLFSGLGTFTFPLS-----------ANSKVHAVESDVAA-----VKALHYAQRDGGKA 311

Query: 273 MRRE-REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCR 330
           +  E R+   L  +      +  + +DPPR+G  +    + +     I YISCNP +  R
Sbjct: 312 VTSEIRDLIELPLMPKELEAYDGVCLDPPRAGAAEQIAEIARTDIRRIAYISCNPVTQAR 371

Query: 331 DLSILSTTH-TIERLALFDQFPYTRHMECGVLL 362
           D+++L     +I  +   DQF ++ H+E   LL
Sbjct: 372 DVAVLVKAGWSIASITPVDQFVFSPHIESVALL 404


>gi|67603988|ref|XP_666584.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657609|gb|EAL36357.1| hypothetical protein Chro.20288 [Cryptosporidium hominis]
          Length = 354

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 35/177 (19%)

Query: 213 LLELYCGNGNFSLVL-------ARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           +L++ CG G   L L        R+F  V  + ++ ++ ++ +A+ N     + N K   
Sbjct: 162 ILDICCGVGAIGLTLLDIFRDLGRNFGDVELIGIDCSREAINSAKKNAENIGIENAKYYT 221

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LY 320
            +++            N L              VDPPRSGL  + +  ++    I   +Y
Sbjct: 222 GTAESILPNFLENLPSNNLV----------IAIVDPPRSGLHSSVIKSLRKMAKIEYLIY 271

Query: 321 ISCNPDSL---CRDLSILSTTHT--IERLALF--------DQFPYTRHMECGVLLVR 364
           +SCN +SL   C +L      HT   E   +F        D FP+T+H+E  + L R
Sbjct: 272 VSCNVESLVKNCIELCSAYDPHTDQQEYFPVFFPECAVPVDMFPFTKHVETILYLKR 328


>gi|309357517|emb|CAP35435.2| hypothetical protein CBG_17893 [Caenorhabditis briggsae AF16]
          Length = 619

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 23/163 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRV-----LAVEIAKPSVEAARYNIAANHVNNV-KIVRMSS 266
           LL++ CG G     L ++ +       + +E+   +VE A+ N   N +    K +   +
Sbjct: 455 LLDICCGTGTIGQCLLKNIENTQKVFCVGIEMITEAVEDAKQNAKQNKMEKCCKYIAGKA 514

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISC 323
           ++  ++M+    +      D+ + R   + +DPPR+G+ +  +   +       ++++SC
Sbjct: 515 EDTFRSMK----YQLPAGFDLRTSRVVGV-LDPPRAGMHEKVILACREMSTMRRLIFVSC 569

Query: 324 NPDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHME 357
            P++       LCR  S        ++ R+   D FP T HME
Sbjct: 570 EPNAAINNIVNLCRPESRKYSGDAFSVTRVQPVDMFPQTNHME 612


>gi|296005341|ref|XP_002808999.1| SAM dependent methyltransferase, putative [Plasmodium falciparum
           3D7]
 gi|225631935|emb|CAX64280.1| SAM dependent methyltransferase, putative [Plasmodium falciparum
           3D7]
          Length = 800

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 19/155 (12%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDR 233
           IY+   N+F QPN  +N +++  +    +  + +     L +L+CG G +S+ LA  FD 
Sbjct: 472 IYKLGANTFFQPNQYLNQYIIRIISKIIEKYKINSSNTCLYDLFCGIGFYSIPLANLFDH 531

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V++++ +  ++++   NI  N + N++ ++M    F Q          LK I++H  R+ 
Sbjct: 532 VISIDYSIDNIKSLEENINLNKIKNIRCIQMDL--FNQH--------NLKQINLHIRRYI 581

Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328
              V   +  L D     ++ Y  + +I  N +++
Sbjct: 582 VNTVKEKKIDLYDK----IKEYIRLTFIQTNNENI 612



 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 295 IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFP 351
           I V+PPR G        ++     HI+Y+SCN  S  +D+S +++  + I+ +   D FP
Sbjct: 699 IIVNPPRKGCGKVFRRWIRGLCCKHIIYVSCNVHSQFKDISHLINLGYIIKDIIPLDTFP 758

Query: 352 YTRHMECGVLL 362
            T H E  V L
Sbjct: 759 RTPHFETIVYL 769


>gi|26324958|dbj|BAC26233.1| unnamed protein product [Mus musculus]
          Length = 493

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 28/197 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           ++F Q N      ML  ++    G+  +  LL++ CG G   L +A+   +V  +E+ + 
Sbjct: 308 DAFFQINTA-GAEMLYRIIGELSGVNSESLLLDICCGTGVIGLSVAQRASQVHGIELVEQ 366

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +VE AR+  A N V N +     ++     + + ++  +L              V+P R+
Sbjct: 367 AVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEKL----------TVAVVNPARA 416

Query: 303 GLDDATVGMVQAYPHI---LYISCNPDS--------LC----RDLSILSTTHTIERLALF 347
           GL    V  ++    I   +++SC P          LC        +L     +      
Sbjct: 417 GLHYRVVRAIRNCRTIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLGDPFVLREAVPV 476

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H E  +L  R
Sbjct: 477 DLFPHTPHCELVLLFTR 493


>gi|269784754|ref|NP_766128.2| tRNA (uracil-5-)-methyltransferase homolog isoform a [Mus musculus]
 gi|269784756|ref|NP_001161466.1| tRNA (uracil-5-)-methyltransferase homolog isoform a [Mus musculus]
 gi|81897080|sp|Q8BQJ6|TRM2_MOUSE RecName: Full=tRNA (uracil-5-)-methyltransferase homolog; AltName:
           Full=TRM2 homolog
 gi|26340260|dbj|BAC33793.1| unnamed protein product [Mus musculus]
 gi|34784571|gb|AAH56937.1| Trmt2b protein [Mus musculus]
 gi|123220830|emb|CAM15919.1| novel protein [Mus musculus]
          Length = 493

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 28/197 (14%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           ++F Q N      ML  ++    G+  +  LL++ CG G   L +A+   +V  +E+ + 
Sbjct: 308 DAFFQINTA-GAEMLYRIIGELSGVNSESLLLDICCGTGVIGLSVAQRASQVHGIELVEQ 366

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +VE AR+  A N V N +     ++     + + ++  +L              V+P R+
Sbjct: 367 AVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEKL----------TVAVVNPARA 416

Query: 303 GLDDATVGMVQAYPHI---LYISCNPDS--------LC----RDLSILSTTHTIERLALF 347
           GL    V  ++    I   +++SC P          LC        +L     +      
Sbjct: 417 GLHYRVVRAIRNCRTIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLGDPFVLREAVPV 476

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H E  +L  R
Sbjct: 477 DLFPHTPHCELVLLFTR 493


>gi|221060771|ref|XP_002261955.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193811105|emb|CAQ41833.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 751

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 7/99 (7%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLV 226
           +  G T  Y+   N+F QPN  +N  +++ +L   K       Q  + +L+CG G +SL 
Sbjct: 420 SCGGYT--YKLGANTFFQPNQYLNECIVQIILKLVKNYKINAKQACVYDLFCGIGFYSLP 477

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           L+  F +V++V+ +  +++    N+  N+V NVK   ++
Sbjct: 478 LSDLFGQVISVDYSIDNIKNLEENVKMNNVKNVKCFNLN 516



 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 295 IFVDPPRSGLDDA----TVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
           + ++PPR G +        G+   Y  I+YISCN +S  RD++ L+   + ++ +   D 
Sbjct: 650 VIINPPRKGCEKVFRRWLRGLCCRY--IIYISCNANSQFRDINHLTNLGYVVKEIIPLDT 707

Query: 350 FPYTRHMECGVLL 362
           FP T H E   LL
Sbjct: 708 FPRTPHFETVALL 720


>gi|317498214|ref|ZP_07956513.1| rumA protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894423|gb|EFV16606.1| rumA protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 51

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 318 ILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           ++YISC P SL RDL +     + ++R    DQFP T H+E  VLL R+
Sbjct: 1   MVYISCKPTSLARDLEVFEAAGYKVKRATAVDQFPNTVHVETCVLLQRR 49


>gi|289614485|emb|CBI58769.1| unnamed protein product [Sordaria macrospora]
          Length = 666

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 45/222 (20%)

Query: 178 LIYRQIENSFTQPNAGI--------NVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVL 227
            I++    SF Q N  I          H+L    +  +G +   +L++ Y G+G F++  
Sbjct: 452 FIFQNPAGSFFQNNNSILSPFTDHIRQHILPPPGSLPEGAKPIKNLIDAYSGSGLFTITQ 511

Query: 228 ARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +  F    + ++IA  S++ AR N   N ++  +   +       A    + F  +  +D
Sbjct: 512 SSLFPGGSIGIDIADKSIDFARRNARLNGLDESQCKFI-------AADAPQLFESVSSLD 564

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILS-------- 336
                   + +DPPR G D + +  ++Q  P  ++Y+SCN  +  RD+ +L         
Sbjct: 565 ADE---TVVVLDPPRKGCDASFLRQLMQFAPRRVVYVSCNVHTQARDVGVLVRGRVGDTF 621

Query: 337 --------------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                         + + IE +  FD FP T H+E   +L R
Sbjct: 622 GEAFVDPTEGEKKMSRYVIESIRGFDFFPQTGHVEGVAILNR 663


>gi|184201062|ref|YP_001855269.1| putative methyltransferase [Kocuria rhizophila DC2201]
 gi|183581292|dbj|BAG29763.1| putative methyltransferase [Kocuria rhizophila DC2201]
          Length = 478

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 14/166 (8%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIA-ANHVNNVK--IVRMSS 266
           + +LY G G F+ V A       RV AVE +  +   A +N+A A HV  V+  + R+ +
Sbjct: 311 VWDLYSGAGLFTAVAADAVGERGRVFAVEGSPVTSADAAHNLAGAPHVTGVRGDVARVLT 370

Query: 267 KEFTQAMRREREFNRL----KDIDIHSY-RFKTIFVDPPRSGLDDATVGMV-QAYPH-IL 319
                     R         +D    +  R   + +DPPR+G     +  V QA P  I+
Sbjct: 371 GRGGARRGDRRRGGGWAASSRDARTAAPPRPDAVIMDPPRAGAAKEVLAAVDQAGPRRIV 430

Query: 320 YISCNPDS-LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           Y++C+P +       +      IE ++ FD +P T H+E   LL R
Sbjct: 431 YVACDPAALGRDLGRLRRRGWRIEDVSGFDLYPNTHHVEAVALLRR 476


>gi|217976905|ref|YP_002361052.1| putative RNA methyltransferase [Methylocella silvestris BL2]
 gi|217502281|gb|ACK49690.1| putative RNA methyltransferase [Methylocella silvestris BL2]
          Length = 422

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 16/145 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G G FSL LA  F  V AV+      E A  +  A      ++ R  + E     R
Sbjct: 274 DLFAGVGTFSLRLA-EFAAVHAVD-----SEGAALSALAKAAGEARL-RPVTVETRDLFR 326

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R      L   D+ SY    I  DPPR+G  +    +  +  P ++ +SCN  S  RD +
Sbjct: 327 RP-----LSSEDLSSY--DGIVFDPPRAGAPEQARAIAASRAPLVVAVSCNHQSFARDAA 379

Query: 334 IL-STTHTIERLALFDQFPYTRHME 357
            L +  + +ER+   DQF ++ H+E
Sbjct: 380 TLCAGGYELERVLPVDQFRHSPHLE 404


>gi|116205099|ref|XP_001228360.1| hypothetical protein CHGG_10433 [Chaetomium globosum CBS 148.51]
 gi|88176561|gb|EAQ84029.1| hypothetical protein CHGG_10433 [Chaetomium globosum CBS 148.51]
          Length = 561

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 27/169 (15%)

Query: 213 LLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           L++ Y G+G F++  +  F    + ++IA  S+  AR N + N +   +  R  + +  Q
Sbjct: 400 LIDAYSGSGLFTITQSALFPGGSIGIDIADKSITYARRNASLNGLAETQ-CRFIAADAPQ 458

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLC 329
             +    ++  + +         + +DPPR G D + +  +++  P  ++Y+SCN  +  
Sbjct: 459 LFQSVSAYDPDETV---------VVLDPPRKGCDASFLRQLLRFAPRRVVYVSCNVHTQA 509

Query: 330 RDLSIL--------------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD+ +L                 + IE +  FD FP T H+E   +L R
Sbjct: 510 RDVGVLVRGAVEGDKEAGEGGARYEIESIQEFDFFPQTGHVEGVAVLNR 558


>gi|118618652|ref|YP_906984.1| SAM-dependent methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118570762|gb|ABL05513.1| SAM-dependent methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 401

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPRSG     + ++       +++I C   S  RDL +     + +  + +FD FP 
Sbjct: 330 VLDPPRSGAGREVIDLLADAGVRRVVHIGCEAASFARDLGLYRGHGYGVHAIKVFDAFPL 389

Query: 353 TRHMECGVLLVR 364
           T H+EC  LL R
Sbjct: 390 THHVECVALLTR 401


>gi|289548756|ref|YP_003473744.1| hypothetical protein Thal_0985 [Thermocrinis albus DSM 14484]
 gi|289182373|gb|ADC89617.1| protein of unknown function Met10 [Thermocrinis albus DSM 14484]
          Length = 391

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 19/107 (17%)

Query: 211 GDL-LELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           GDL L+L+C  G F+L + R   + V+AV+I+ P++E  + N   N+++ +  V  ++ +
Sbjct: 218 GDLCLDLFCHTGGFALNMKRKGAKEVIAVDISAPALETGKKNAQLNNLDGIHWVEDNAFD 277

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVG 310
           F + M +E              +F  + +DPP     ++ L++A  G
Sbjct: 278 FLRKMHKE------------GNQFDVVVIDPPSFTKTKASLENALRG 312


>gi|118589266|ref|ZP_01546672.1| RNA methyltransferase putative, TrmA family protein [Stappia
           aggregata IAM 12614]
 gi|118437966|gb|EAV44601.1| RNA methyltransferase putative, TrmA family protein [Stappia
           aggregata IAM 12614]
          Length = 410

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 15/170 (8%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           H L  ++    G    + +L+ G G F+L L R  + V AVE    +   A ++ A    
Sbjct: 253 HALSKLVMDGVGKAKTIADLFSGVGTFALRLGRQAN-VHAVE--GDAAALAAFDKALRKP 309

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAY 315
             +K V    ++ +   RR    + L+  D        +  DPPR+G    A    +   
Sbjct: 310 QGLKKVTFERRDLS---RRPLVKDELEPYD-------AVVFDPPRAGAQAQAEQLALSKV 359

Query: 316 PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             I+ +SCNP +L RDL I L   + ++ +   DQF Y+ H+E   +L R
Sbjct: 360 KTIVAVSCNPATLARDLRILLDGGYVLQSVTPVDQFHYSPHIEAVAVLTR 409


>gi|227549133|ref|ZP_03979182.1| RNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078801|gb|EEI16764.1| RNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 410

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           + +DPPRSG  +  V  V  A P  I+++ C+P +  RDL   +     + R+ L D FP
Sbjct: 332 VVLDPPRSGAGEDVVRRVAGAAPERIIHVGCDPATFARDLGYWAAHGFGVRRMVLIDAFP 391

Query: 352 YTRHME 357
            T H E
Sbjct: 392 NTHHFE 397


>gi|30267784|gb|AAP21765.1| Trm2p [Saccharomyces cerevisiae]
          Length = 77

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL------STTHTIERLA 345
           ++ +DPPR G D+  +  + AY    I+YISCN  S  RD+          + H IE + 
Sbjct: 9   SVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLKETENGSAHQIESIR 68

Query: 346 LFDQFPYT 353
            FD FP T
Sbjct: 69  GFDFFPQT 76


>gi|33321937|gb|AAQ06688.1|AF496029_1 trma family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 92

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 295 IFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           +  DPPR+GL  + +  +++  P   +YISCNP +L +DL +L   + +  +   D  P 
Sbjct: 19  LIXDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYDVRVIENVDMLPQ 78

Query: 353 TRHMEC-GVLLVRK 365
           T   EC   L +RK
Sbjct: 79  TPRCECIAKLTLRK 92


>gi|148253962|ref|YP_001238547.1| putative RNA methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146406135|gb|ABQ34641.1| 23S rRNA m(5)U-1939 methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 411

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 16/154 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F+L LA    RV A++    S+ A +    A     +K ++  +++    
Sbjct: 272 VADLFCGVGPFALRLAARA-RVTAMDNDAGSIAALQK---AAGCPGLKPIKAEARDL--- 324

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            RR      L+DID        +  DPPR G       +  +  P I+ +SCN  +  RD
Sbjct: 325 FRRPLMPAELRDID-------AVVFDPPRQGAQAQAKQLAASKVPVIVAVSCNVTTFARD 377

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           + +L    + +E +   DQF +T H+E    L R
Sbjct: 378 MRLLIDGGYKLETVVPVDQFRHTPHVELVARLAR 411


>gi|126463623|ref|YP_001044737.1| RNA SAM-dependent methyltransferase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105287|gb|ABN77965.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 404

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G F+L LA   + V AVE    +   A  +        +K V + +++    
Sbjct: 262 VTDLFAGAGTFTLPLAAGAE-VHAVE--GDAAMMAALDRGWRQAPGLKRVTVETRDL--- 315

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            RR  E + L+       R + + +DPPR+G +     + +A  P + ++SCNP +  RD
Sbjct: 316 FRRPLEPDELR-------RTEAVVIDPPRAGAEAQARALARAAVPVVAFVSCNPVTFARD 368

Query: 332 -LSILSTTHTIERLALFDQFPYTRHME 357
            L ++   + ++ + + DQF ++ H+E
Sbjct: 369 ALILMRGGYRLDWVQVVDQFRWSSHVE 395


>gi|30683900|ref|NP_180412.2| zinc finger (CCCH-type) family protein [Arabidopsis thaliana]
 gi|75154217|sp|Q8L7S3|C3H24_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 24;
           Short=AtC3H24
 gi|22135822|gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana]
 gi|25090447|gb|AAN72304.1| At2g28450/T1B3.3 [Arabidopsis thaliana]
 gi|330253030|gb|AEC08124.1| zinc finger CCCH domain-containing protein 24 [Arabidopsis
           thaliana]
          Length = 809

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 61/177 (34%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK------------ 260
           L ++ CG G   L LA     V+ +E+   +V  A  N   N ++N K            
Sbjct: 561 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFICSKAEDVMSS 620

Query: 261 -------IVRM------------------SSKEFTQAM-------------------RRE 276
                  + +M                  S++E T +                      +
Sbjct: 621 LLKQYLDVTQMEEAKPLSNANDDLNKQIPSTEEMTNSEHVADQNLPPSNTQVEELQDNEQ 680

Query: 277 REFNRLKDIDIHSYRFKTI--FVDPPRSGLDDATVGMVQAYP---HILYISCNPDSL 328
           ++ + L+       +FK +   VDPPRSGL  A +  ++ +P    ++YISCNP++L
Sbjct: 681 KDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYISCNPETL 737


>gi|114706810|ref|ZP_01439710.1| putative rna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537758|gb|EAU40882.1| putative rna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 412

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 15/152 (9%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G+G F+L LA+   +V AVE      EA               ++  + E     R
Sbjct: 272 DLFAGSGAFTLRLAKG-AKVHAVE-----SEAGALAALDAAARQASGLKPITHERRDLYR 325

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS 333
           R      LK  D        +  DPPR+G +     +  +    I  +SCNP +L RDL 
Sbjct: 326 RPLTVKDLKPYD-------GVVFDPPRAGAEGVAQALAASTVKRIAAVSCNPQTLGRDLR 378

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           IL      ++ +   DQF ++ H+E   LL R
Sbjct: 379 ILIDGGFQLKSVTPIDQFLWSHHVEAVALLER 410


>gi|262202192|ref|YP_003273400.1| SAM-dependent methyltransferase [Gordonia bronchialis DSM 43247]
 gi|262085539|gb|ACY21507.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase-like protein [Gordonia
           bronchialis DSM 43247]
          Length = 443

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           + +DPPR+G  +  V  +  A P  I++I C+     RDL +  T  + I  L  FD FP
Sbjct: 370 VVLDPPRTGAGEKVVTAISDARPQVIIHIGCDAARFARDLGLFVTHGYRIAELRGFDAFP 429

Query: 352 YTRHMECGVLLVRK 365
            T H+E    LVR 
Sbjct: 430 LTHHVEVIACLVRG 443


>gi|182678785|ref|YP_001832931.1| putative RNA methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634668|gb|ACB95442.1| putative RNA methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 430

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 18/184 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q        +   V+AA  G +  + +L+ G G FSL LA    +V A ++ +  +
Sbjct: 254 GAFLQATEAGEAALASRVVAALAGRR-KIADLFAGLGTFSLPLAES-AQVHAFDLEQAPL 311

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A      A+H   +  V +  ++          F R    ++  Y    I  DPPR+G 
Sbjct: 312 TAL---AKASHAPGLHPVEVERRDL---------FRRPLATELAGY--DAIVFDPPRAGA 357

Query: 305 DD-ATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           +  A        P ++ +SCNP +  RD SIL +  + +  +   DQF ++ H+E   + 
Sbjct: 358 EQQARALAASVVPVVVAVSCNPQTFARDASILRAGGYDLREVTPIDQFRHSPHVELIGVF 417

Query: 363 VRKP 366
            R+P
Sbjct: 418 ERQP 421


>gi|94971793|ref|YP_593841.1| SAM-dependent methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553843|gb|ABF43767.1| SAM-dependent methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 405

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 13/101 (12%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E   AA +  +GD L+++   G F+L L ++  RV  V++++P++E A  N   N  N  
Sbjct: 224 ENYAAAAQYARGDALDVFTYQGGFALHLYQNCRRVTGVDMSRPALEVAEENATLNEYN-- 281

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                   E+ +A      F+ LKD  +    + TI +DPP
Sbjct: 282 -------LEWIEA----NAFDYLKDQSVGGRAYDTIVLDPP 311


>gi|253744396|gb|EET00610.1| HpaII tiny fragments locus 9c [Giardia intestinalis ATCC 50581]
          Length = 707

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 36/180 (20%)

Query: 212 DLLELYCGNGNFS-----LVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +LL++ CG+G        +VL +  D       +  ++ ++ ++  A +N + N  +N  
Sbjct: 516 ELLDICCGSGVIGQCLAQIVLKKMIDFHDLHVNIKGIDCSQDAIWNADFNASENFKDNPN 575

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHI 318
           I  +      +A +    F+    I I         +DPPR+G+    +  ++     ++
Sbjct: 576 ISAL--YVCGKAEQTPEYFSGSAKIGI---------LDPPRTGVFQNVLTAIRYSTLEYL 624

Query: 319 LYISCNPDSLCR---DLSILS---------TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +YISCNP ++ +   DLSI+S             +E L  F+ FP   H+E   +L R P
Sbjct: 625 IYISCNPKTMSQNIIDLSIVSVDPDASKRTAPFYVESLVGFNMFPGCEHVEAVAILHRCP 684


>gi|84514895|ref|ZP_01002258.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Loktanella
           vestfoldensis SKA53]
 gi|84511054|gb|EAQ07508.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Loktanella
           vestfoldensis SKA53]
          Length = 400

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 16/183 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F Q        +L  V A T+G    +++L+ G G F+L LA   + V AVE     +
Sbjct: 232 GAFLQATKQGEAALLAAVDAITQGAS-RIVDLFAGCGTFTLPLAARAE-VHAVESETAML 289

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A      A      + +R  + E     RR  E + +        ++    +DPPR+G 
Sbjct: 290 AALDRGWRAG-----RTLRKVTTEARDLFRRPLEPDEIA-------KYDAAVIDPPRAGA 337

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           +     + ++    I+ +SCNP +  RD  +L      +  + + DQF ++ H+E     
Sbjct: 338 EAQIDALARSDIKTIVMVSCNPVTFARDAKVLVDAGFAMPWVQVVDQFRWSPHVEIVSPF 397

Query: 363 VRK 365
            RK
Sbjct: 398 TRK 400


>gi|190890623|ref|YP_001977165.1| 23S rRNA (uracil-5-)-methyltransferase [Rhizobium etli CIAT 652]
 gi|190695902|gb|ACE89987.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli CIAT
           652]
          Length = 416

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q        M E VLA   G    + +L+ G G FS+ LAR   RV AVE    + 
Sbjct: 249 GGFAQATKPAEEAMAELVLAHV-GKAKRIADLFAGAGTFSVRLAR-IGRVHAVEAE--AA 304

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A  + AA     +K V +  ++  +     +EF            +  +  DPPR+G 
Sbjct: 305 ALAALDQAARKTQGLKPVSVEKRDLFRRPVMTQEFKP----------YDAVVFDPPRAGA 354

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +     + + A   I  +SCNP +L RDL+IL    + I  +   DQF +T H+E
Sbjct: 355 EFQCKELARSAVKKIAAVSCNPLTLARDLAILVEGGYRITGVTPIDQFLWTSHVE 409


>gi|329767393|ref|ZP_08258918.1| hypothetical protein HMPREF0428_00615 [Gemella haemolysans M341]
 gi|328836082|gb|EGF85773.1| hypothetical protein HMPREF0428_00615 [Gemella haemolysans M341]
          Length = 171

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 11/81 (13%)

Query: 291 RFKTIFVDPPRSGLDD------ATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIER 343
           +   + VD PR G ++      A++G+ +    I+Y+SCNP +L RD+ I+    + +  
Sbjct: 2   KLDAVIVDSPRKGCEESFLRDLASMGIEK----IVYVSCNPATLARDMEIMRGLGYKLGA 57

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           +   D FP T H+E   LL +
Sbjct: 58  VQPVDMFPGTYHVETLALLSK 78


>gi|149197919|ref|ZP_01874968.1| RNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149139140|gb|EDM27544.1| RNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 14/181 (7%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F+Q N  +   M+E      K  + D LL+LYCG G FS  L +    VL  E++  ++
Sbjct: 227 GFSQVNESMVPEMVELAKTMLKASKDDVLLDLYCGYGLFSHTLGQSCKNVLGYEMSTTAI 286

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           ++A+  I+    ++ ++   + K    A     +F++ K  ++       + +DPPR G 
Sbjct: 287 DSAK-EISKRLKSHNRMKFFAEK--IDANLVHNKFSQAKQTEL-------MLLDPPRQGC 336

Query: 305 DDATVG-MVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +   +  + +  P  +L I C  D + ++ L      +  + +   D F  T ++E  VL
Sbjct: 337 EPGVIAQLAKRRPKRVLQIFCGTDVVPKEILEWQKQGYKAKVIQPIDMFAGTPNLETMVL 396

Query: 362 L 362
            
Sbjct: 397 F 397


>gi|167823861|ref|ZP_02455332.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 9]
          Length = 84

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 292 FKTIFVDPPRSG---LDDATVGMVQ--AYP---HILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G   +  A   + Q  A P    I+Y+SCNP +L RD  +L     + +
Sbjct: 1   FDKFLVDPPREGALAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRL 60

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 61  KGAGVVNMFPHTSHVESIALFER 83


>gi|298707385|emb|CBJ30020.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 516

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 31/179 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKP-SVEAARYNIAAN 254
           +++WV   +      + ELY G G   L +A    F R   V    P S E +R  +  N
Sbjct: 357 VVDWVPEGS-----GVCELYAGVGVLGLNVAAKAAFVRCSDVNSFNPRSFERSRKTLPPN 411

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-- 312
               V    MS+ E  +              D  S   + + VDPPR GLD   +  +  
Sbjct: 412 VRKRVSFEAMSADEAME--------------DGESEGCEVLIVDPPRKGLDKGVMDALMD 457

Query: 313 ------QAYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                 +A   ++Y+SC  D+L RD ++++     +     F  FP + H+E   +  R
Sbjct: 458 PDDPNTEALRRVIYVSCGFDALKRDAMNLIGAGWVLRHSEGFVLFPGSDHIETFAIFDR 516


>gi|83590481|ref|YP_430490.1| hypothetical protein Moth_1645 [Moorella thermoacetica ATCC 39073]
 gi|83573395|gb|ABC19947.1| hypothetical protein Moth_1645 [Moorella thermoacetica ATCC 39073]
          Length = 292

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 198 MLEWVLAATKGIQGDL--LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           +L W L    G++ DL  L++ CG GN++L LAR   RV+A++ A   +   +   AA  
Sbjct: 64  ILHW-LGHHGGLEKDLEVLDIGCGTGNYALPLARRARRVVALDPAAEMLAILKEKAAAEG 122

Query: 256 VNNVKIVRMSSKE 268
           +NNV+ ++M+ +E
Sbjct: 123 INNVEPIQMAWEE 135


>gi|308159717|gb|EFO62238.1| tRNA (uracil-5-)-methyltransferase, putative [Giardia lamblia P15]
          Length = 706

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 38/179 (21%)

Query: 212 DLLELYCGNGNFSLVLAR------------HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +LL++ CG+G     LA+            H + +  ++ ++ ++  A +N + N  +N 
Sbjct: 515 ELLDICCGSGVIGQCLAQVVLKKMINVQNLHVN-IKGLDCSQNAIWNAEFNASDNFKDNP 573

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPH 317
            I   S+        +  E+         S   K   +DPPR+G+  + +  ++     +
Sbjct: 574 NI---SALYICGKAEQTPEY--------FSGSAKIGILDPPRTGVFQSVLTAIRHSTLEY 622

Query: 318 ILYISCNPDSLCR---DLSILSTTHT---------IERLALFDQFPYTRHMECGVLLVR 364
           ++YISCNP ++ +   DLSI+ST            +E L  F+ FP   H+E   +L R
Sbjct: 623 LIYISCNPKTMSQNIIDLSIVSTDSDLSKRTAPFYVESLVGFNMFPGCEHVETVAILHR 681


>gi|330253031|gb|AEC08125.1| zinc finger CCCH domain-containing protein 24 [Arabidopsis
           thaliana]
          Length = 804

 Score = 45.1 bits (105), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 60/174 (34%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK------------ 260
           L ++ CG G   L LA     V+ +E+   +V  A  N   N ++N K            
Sbjct: 561 LFDVCCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFICSKAEDVMSS 620

Query: 261 -------IVRM------------------SSKEFTQAM-------------------RRE 276
                  + +M                  S++E T +                      +
Sbjct: 621 LLKQYLDVTQMEEAKPLSNANDDLNKQIPSTEEMTNSEHVADQNLPPSNTQVEELQDNEQ 680

Query: 277 REFNRLKDIDIHSYRFKTI--FVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328
           ++ + L+       +FK +   VDPPRSGL  A +  ++ +P   YISCNP++L
Sbjct: 681 KDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRTHPR--YISCNPETL 732


>gi|218461861|ref|ZP_03501952.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli Kim
           5]
          Length = 222

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 16/175 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q        M E VLA   G    +++L+ G G FSL LA    RV AVE    + 
Sbjct: 55  GGFAQATKPAEEAMAELVLAHA-GKAKRIVDLFAGAGTFSLRLA-QIGRVHAVEAE--AA 110

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A  + AA     +K V +  ++  +     +EF            F  +  DPPR+G 
Sbjct: 111 ALAALDQAARKTQGLKPVSVEKRDLFRRPLMTQEFKP----------FDMVVFDPPRAGA 160

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           +     + ++    I  +SCNP +L RDL IL    + I  +   DQF ++ H+E
Sbjct: 161 EFQCKELARSGVKKIAAVSCNPLTLARDLQILVEGGYRITGVTPIDQFLWSSHVE 215


>gi|77380207|gb|ABA71738.1| RNA methyltransferase fusion protein [Enterococcus faecalis]
          Length = 160

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           I+Y+SCNP +L RD+++L+   +  + +   D FP T H+E  VLL  K
Sbjct: 7   IVYVSCNPATLARDIALLTEGGYEAKEIQPVDNFPQTTHIETVVLLSHK 55


>gi|261493634|ref|ZP_05990153.1| putative tRNA methyltransferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261310634|gb|EEY11818.1| putative tRNA methyltransferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 72

 Score = 44.7 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+  A    +      +++Y SCN  S+ +D   L T + + ++ LFD F +
Sbjct: 1   MIVNPPRRGIGQALAEFLNNLGSTYLIYSSCNAQSMAKDFESL-THYELCKVQLFDMFAH 59

Query: 353 TRHMECGVLLVRK 365
           T H E    L++K
Sbjct: 60  TSHYETLTFLIKK 72


>gi|288917114|ref|ZP_06411484.1| RNA methyltransferase, TrmA family [Frankia sp. EUN1f]
 gi|288351483|gb|EFC85690.1| RNA methyltransferase, TrmA family [Frankia sp. EUN1f]
          Length = 434

 Score = 44.7 bits (104), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 15/151 (9%)

Query: 214 LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+LY G G F+  LA       RV+A+E  + +V +A  ++A     ++  V + S   T
Sbjct: 286 LDLYSGAGLFAAFLAEAVGPTGRVIAMESDEAAVRSAARSLA-----DLPWVSLRSLRVT 340

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSL 328
            A  R      +   D          +DPPR+G     +  + A+ P  ++Y++C+P +L
Sbjct: 341 PATVR----GLIGGSDRQGGGVDVAVLDPPRTGAGREVMAALLAHRPRRVVYVACDPAAL 396

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
            RD++      + +  L  FD FP T H+EC
Sbjct: 397 ARDVAAAAEEGYRLTALRAFDLFPMTSHVEC 427


>gi|255262179|ref|ZP_05341521.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255104514|gb|EET47188.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 404

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 31/204 (15%)

Query: 170 RLTVAGRTLIYR-----QIENSFTQPNAGINVHML-EWVLAATKGIQ---GD---LLELY 217
           RLT    T++ R     Q   +   P  G  +    E  LA T  +Q   GD   +++L+
Sbjct: 209 RLTWNDETIVTRRAPAHQFGKAQVAPPPGAFLQATKEGELALTSAVQNALGDASIVVDLF 268

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEA--ARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G G F++ +A    +V AVE     +E   A + +A      +K V   +++  +    
Sbjct: 269 AGAGTFTIPMAETA-QVHAVEGVADMLETLDAGWRMA----TGLKRVTTEARDLFRRPLL 323

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSI 334
             EF++ KD          + +DPPR+G +  T  +   A P +  +SCNP +  RD  I
Sbjct: 324 PDEFHK-KD---------GVVIDPPRAGAEAQTHEIANSAVPLVASVSCNPVTFARDARI 373

Query: 335 L-STTHTIERLALFDQFPYTRHME 357
           L      ++ +   DQF ++ H E
Sbjct: 374 LVDAGFALDWVQPVDQFRWSNHTE 397


>gi|170594415|ref|XP_001901959.1| hypothetical protein [Brugia malayi]
 gi|158590903|gb|EDP29518.1| conserved hypothetical protein [Brugia malayi]
          Length = 659

 Score = 44.3 bits (103), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 28/166 (16%)

Query: 213 LLELYCGNGNFSLVL---ARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +L++ CG G   + L   A+   R  ++ +EI   +VE A  N   N++ +       S 
Sbjct: 494 ILDICCGTGTIGISLMKLAKTVSRKFLVGIEIIPEAVEDATINAIDNNLPS------DSY 547

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTI----FVDPPRSGLDDATVGMVQAYPH---ILY 320
           +F    + E  F RL+ +       KT+     +DPPR+G+ +  V   +A      I +
Sbjct: 548 KFVVG-KAENIFFRLERLLPSWIDLKTVNIIGVIDPPRAGIHEKVVIGCRALTQLKKIAF 606

Query: 321 ISCNPD-------SLCRDLS--ILSTTHTIERLALFDQFPYTRHME 357
           +SCNP         LCR  S         +  +   D FP T H E
Sbjct: 607 VSCNPSLAMKNMVDLCRPTSKKFAGEPFKLTSITPVDMFPQTSHCE 652


>gi|313156842|gb|EFR56282.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 24/124 (19%)

Query: 204 AATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           AA K I GD  L+L CG G  +L L+R F RV+ +E ++     A  N       N+++V
Sbjct: 80  AAHKRIDGDTALDLTCGLGVDALFLSRRFRRVVTLERSETLARIAAENFRRLQAANIEVV 139

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
             S++E+ Q                   RF  IF DP R   D   +  ++A        
Sbjct: 140 HTSAEEYLQR---------------PGLRFDWIFADPDRRSADGRKLVRLEA-------- 176

Query: 323 CNPD 326
           C+PD
Sbjct: 177 CSPD 180


>gi|114685147|ref|XP_001166965.1| PREDICTED: HpaII tiny fragments locus 9C isoform 3 [Pan
           troglodytes]
          Length = 567

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 32/134 (23%)

Query: 213 LLELYCGNGNFSLVLAR------------------HFDRVLAVEIAKPSVEAARYNIAAN 254
           +L++ CG G   L LAR                     RV+ VE+   +VE AR N   N
Sbjct: 436 VLDVCCGTGTIGLALARGPMYSPPWVGRHHAFLFQKVKRVIGVELCPEAVEDARVNAQDN 495

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++NV+     +++    +      +RL    +         +DPPR+GL    +  ++ 
Sbjct: 496 ELSNVEFHCGRAEDLVPTL-----VSRLASQHL------VAILDPPRAGLHSKVILAIRR 544

Query: 315 YPH---ILYISCNP 325
             +   +LY+SCNP
Sbjct: 545 AKNLRRLLYVSCNP 558


>gi|83314737|ref|XP_730490.1| SAM-dependent methyltransferase [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23490228|gb|EAA22055.1| SAM-dependent methyltransferase related to
           tRNA(uracyl-5-)-methyltransferase [Plasmodium yoelii
           yoelii]
          Length = 600

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 167 VDERLTVAGRTLIYRQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-----L 213
           + + +T+ G+  IY    N        +F QPN  +N  +++ V    +  + +     +
Sbjct: 362 IKKEITLFGQNYIYHTYNNYTYKLGANTFFQPNQYLNECIIQIVFKLIQNYKINSQTQCV 421

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            +L+CG G +SL L+  F+ V++V+ +  +++    NI  N++ N+K + ++
Sbjct: 422 FDLFCGIGFYSLPLSSIFNHVISVDYSIENIKNLEENIKLNNIQNIKPIHIN 473


>gi|149912911|ref|ZP_01901445.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           AzwK-3b]
 gi|149813317|gb|EDM73143.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           AzwK-3b]
          Length = 413

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 15/147 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G F+L LAR    V AVE     + A   +        +K V   +++    
Sbjct: 272 VADLFAGCGTFALPLARDM-AVHAVEGDAAMMSA--LDAGWRRTPGLKAVTHETRDL--- 325

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRD 331
            RR    + L         F  + +DPPR+G    T  +   + P I Y+SCNP +  +D
Sbjct: 326 FRRPLLPDELAP-------FDAVVLDPPRAGASAQTAQICASSVPVIAYVSCNPVTFAKD 378

Query: 332 L-SILSTTHTIERLALFDQFPYTRHME 357
              ++   + +  + + DQF ++ H+E
Sbjct: 379 ARQLIDHGYRLVSIRVVDQFRWSSHVE 405


>gi|126734434|ref|ZP_01750181.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. CCS2]
 gi|126717300|gb|EBA14164.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. CCS2]
          Length = 400

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 17/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+ G G F+L LA+  + V AVE     ++A        H      +R  + E    
Sbjct: 259 IVDLFAGCGTFTLPLAKRAE-VHAVEGEVAMLDALDRGWREGHQ-----LRRVTTETRDL 312

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
            RR  E + L+        F T  +DPPR+G  +A +  + A     I  +SCNP +  R
Sbjct: 313 FRRPLETDELR-------HFDTAVIDPPRAGA-EAQIETLAASEIKTIAMVSCNPVTFAR 364

Query: 331 DL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   ++        + + DQF ++ H+E      RK
Sbjct: 365 DARRLVDAGFDTPWMQVVDQFRWSPHVEIVASFTRK 400


>gi|27377759|ref|NP_769288.1| RNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|50401761|sp|Q89RW4|Y2648_BRAJA RecName: Full=Uncharacterized RNA methyltransferase bll2648
 gi|27350904|dbj|BAC47913.1| RNA methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 415

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 16/161 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L  ++A   G   ++L+L+CG G F+L LA    RV A +       A      A     
Sbjct: 262 LASLVAERVGKAKEVLDLFCGVGPFALRLAEKA-RVTAYDS---DAGAVAALAKAARTPG 317

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH 317
           +K +R   ++     RR      L+D       F  +  DPPR G     + +  +  P 
Sbjct: 318 LKPIRCEPRDL---FRRPLVPQELRD-------FDAVVFDPPRQGAQAQALKLAASTVPV 367

Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           I+ +SCN  +  RD  +L    + I+ +   DQF +T H+E
Sbjct: 368 IVAVSCNVATFARDARLLIDGGYRIDGVVPVDQFRHTPHVE 408


>gi|229153879|ref|ZP_04282009.1| hypothetical protein bcere0010_860 [Bacillus cereus ATCC 4342]
 gi|228629560|gb|EEK86257.1| hypothetical protein bcere0010_860 [Bacillus cereus ATCC 4342]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N V NV I + S 
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRVGNVHIFQSSI 117

Query: 267 KEFTQAM 273
            E    M
Sbjct: 118 YENVDGM 124


>gi|213028556|ref|ZP_03343003.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 324

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 25/124 (20%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE  + 
Sbjct: 218 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVQA 274

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 275 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 319

Query: 300 PRSG 303
            R+G
Sbjct: 320 ARAG 323


>gi|213622841|ref|ZP_03375624.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 291

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 25/124 (20%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE  + 
Sbjct: 177 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVQA 233

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR---FKTIFVDP 299
            VE  R N   N ++NV     + +E               D+    +    F  + +DP
Sbjct: 234 LVEKGRENAIRNGLHNVTFFHENLEE---------------DVTKQPWAKNGFDKVLLDP 278

Query: 300 PRSG 303
            R+G
Sbjct: 279 ARAG 282


>gi|187730163|ref|YP_001883033.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella boydii CDC
           3083-94]
 gi|226712995|sp|B2TZQ2|RSMC_SHIB3 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|187427155|gb|ACD06429.1| ribosomal RNA small subunit methyltransferase C [Shigella boydii
           CDC 3083-94]
          Length = 343

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN+V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANYVEG 247


>gi|329850869|ref|ZP_08265714.1| 23S rRNA uracil-5--methyltransferase rumA [Asticcacaulis
           biprosthecum C19]
 gi|328841184|gb|EGF90755.1| 23S rRNA uracil-5--methyltransferase rumA [Asticcacaulis
           biprosthecum C19]
          Length = 78

 Score = 43.5 bits (101), Expect = 0.050,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 292 FKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
           F  I  DPPR+G +     + ++     + +SCNP +  RD  IL +   +++R+   DQ
Sbjct: 4   FDAIVFDPPRAGAEAQAAEIARSGVARAVAVSCNPQTFVRDAKILVNAGFSLDRVTPIDQ 63

Query: 350 FPYTRHME 357
           F ++ H+E
Sbjct: 64  FLWSAHVE 71


>gi|217957676|ref|YP_002336220.1| ybxB protein [Bacillus cereus AH187]
 gi|222093871|ref|YP_002527921.1| ybxb protein [Bacillus cereus Q1]
 gi|229136947|ref|ZP_04265574.1| hypothetical protein bcere0013_910 [Bacillus cereus BDRD-ST26]
 gi|229194491|ref|ZP_04321294.1| hypothetical protein bcere0001_870 [Bacillus cereus m1293]
 gi|217063004|gb|ACJ77254.1| ybxB protein [Bacillus cereus AH187]
 gi|221237919|gb|ACM10629.1| ybxB protein [Bacillus cereus Q1]
 gi|228588957|gb|EEK46972.1| hypothetical protein bcere0001_870 [Bacillus cereus m1293]
 gi|228646485|gb|EEL02692.1| hypothetical protein bcere0013_910 [Bacillus cereus BDRD-ST26]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S 
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSSV 117

Query: 267 KEFTQAM 273
            E    M
Sbjct: 118 YENVDGM 124


>gi|49476714|ref|YP_034453.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196036938|ref|ZP_03104319.1| ybxB protein [Bacillus cereus W]
 gi|196042331|ref|ZP_03109606.1| ybxB protein [Bacillus cereus NVH0597-99]
 gi|218901304|ref|YP_002449138.1| ybxB protein [Bacillus cereus AH820]
 gi|228925354|ref|ZP_04088450.1| hypothetical protein bthur0010_880 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931603|ref|ZP_04094509.1| hypothetical protein bthur0009_960 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943907|ref|ZP_04106292.1| hypothetical protein bthur0007_880 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119763|ref|ZP_04249024.1| hypothetical protein bcere0016_880 [Bacillus cereus 95/8201]
 gi|301051838|ref|YP_003790049.1| hypothetical protein BACI_c01280 [Bacillus anthracis CI]
 gi|49328270|gb|AAT58916.1| conserved hypothetical protein, possible methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|195990451|gb|EDX54438.1| ybxB protein [Bacillus cereus W]
 gi|196026837|gb|EDX65469.1| ybxB protein [Bacillus cereus NVH0597-99]
 gi|218536109|gb|ACK88507.1| ybxB protein [Bacillus cereus AH820]
 gi|228663664|gb|EEL19243.1| hypothetical protein bcere0016_880 [Bacillus cereus 95/8201]
 gi|228815740|gb|EEM61976.1| hypothetical protein bthur0007_880 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828031|gb|EEM73759.1| hypothetical protein bthur0009_960 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834276|gb|EEM79817.1| hypothetical protein bthur0010_880 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|300374007|gb|ADK02911.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S 
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQSSV 117

Query: 267 KEFTQAM 273
            E    M
Sbjct: 118 YENVDGM 124


>gi|300119588|ref|ZP_07057132.1| ybxB protein [Bacillus cereus SJ1]
 gi|298723060|gb|EFI63958.1| ybxB protein [Bacillus cereus SJ1]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S 
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQSSV 117

Query: 267 KEFTQAM 273
            E    M
Sbjct: 118 YENVDGM 124


>gi|332202891|gb|EGJ16959.1| 23S rRNA (Uracil-5-)-methyltransferase RumA domain protein
           [Streptococcus pneumoniae GA47901]
          Length = 107

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 295 IFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++   D FP
Sbjct: 31  ILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQPVDLFP 90

Query: 352 YTRHMECGVLLVR 364
            T H+E   LL +
Sbjct: 91  QTHHVETVALLSK 103


>gi|229170952|ref|ZP_04298553.1| hypothetical protein bcere0006_880 [Bacillus cereus MM3]
 gi|228612492|gb|EEK69713.1| hypothetical protein bcere0006_880 [Bacillus cereus MM3]
          Length = 213

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S 
Sbjct: 72  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSSV 131

Query: 267 KEFTQAM 273
            E    M
Sbjct: 132 YENVDGM 138


>gi|42779182|ref|NP_976429.1| ybxB protein [Bacillus cereus ATCC 10987]
 gi|42735097|gb|AAS39037.1| ybxB protein [Bacillus cereus ATCC 10987]
 gi|324324091|gb|ADY19351.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S 
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSSV 117

Query: 267 KEFTQAM 273
            E    M
Sbjct: 118 YENVDGM 124


>gi|52145117|ref|YP_081712.1| methyltransferase [Bacillus cereus E33L]
 gi|51978586|gb|AAU20136.1| conserved hypothetical protein; possible methyltransferase
           [Bacillus cereus E33L]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S 
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQSSV 117

Query: 267 KEFTQAM 273
            E    M
Sbjct: 118 YENVDGM 124


>gi|30260292|ref|NP_842669.1| ybxB protein [Bacillus anthracis str. Ames]
 gi|47525356|ref|YP_016705.1| methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183135|ref|YP_026387.1| ybxB protein [Bacillus anthracis str. Sterne]
 gi|65317558|ref|ZP_00390517.1| COG2813: 16S RNA G1207 methylase RsmC [Bacillus anthracis str.
           A2012]
 gi|165873340|ref|ZP_02217942.1| ybxB protein [Bacillus anthracis str. A0488]
 gi|167636698|ref|ZP_02394985.1| ybxB protein [Bacillus anthracis str. A0442]
 gi|167642036|ref|ZP_02400265.1| ybxB protein [Bacillus anthracis str. A0193]
 gi|170689708|ref|ZP_02880884.1| ybxB protein [Bacillus anthracis str. A0465]
 gi|170709437|ref|ZP_02899844.1| ybxB protein [Bacillus anthracis str. A0389]
 gi|177656135|ref|ZP_02937162.1| ybxB protein [Bacillus anthracis str. A0174]
 gi|190569398|ref|ZP_03022285.1| ybxB protein [Bacillus anthracis Tsiankovskii-I]
 gi|227812774|ref|YP_002812783.1| ybxB protein [Bacillus anthracis str. CDC 684]
 gi|228983356|ref|ZP_04143569.1| hypothetical protein bthur0001_870 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229602055|ref|YP_002864752.1| ybxB protein [Bacillus anthracis str. A0248]
 gi|254684395|ref|ZP_05148255.1| ybxB protein [Bacillus anthracis str. CNEVA-9066]
 gi|254720822|ref|ZP_05182614.1| ybxB protein [Bacillus anthracis str. A1055]
 gi|254733744|ref|ZP_05191459.1| ybxB protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739413|ref|ZP_05197113.1| ybxB protein [Bacillus anthracis str. Kruger B]
 gi|254751214|ref|ZP_05203252.1| ybxB protein [Bacillus anthracis str. Vollum]
 gi|254756813|ref|ZP_05208841.1| ybxB protein [Bacillus anthracis str. Australia 94]
 gi|30253613|gb|AAP24155.1| ybxB protein [Bacillus anthracis str. Ames]
 gi|47500504|gb|AAT29180.1| ybxB protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177062|gb|AAT52438.1| ybxB protein [Bacillus anthracis str. Sterne]
 gi|164710920|gb|EDR16495.1| ybxB protein [Bacillus anthracis str. A0488]
 gi|167510002|gb|EDR85419.1| ybxB protein [Bacillus anthracis str. A0193]
 gi|167527872|gb|EDR90699.1| ybxB protein [Bacillus anthracis str. A0442]
 gi|170125654|gb|EDS94574.1| ybxB protein [Bacillus anthracis str. A0389]
 gi|170666333|gb|EDT17120.1| ybxB protein [Bacillus anthracis str. A0465]
 gi|172079855|gb|EDT64967.1| ybxB protein [Bacillus anthracis str. A0174]
 gi|190559491|gb|EDV13489.1| ybxB protein [Bacillus anthracis Tsiankovskii-I]
 gi|227007229|gb|ACP16972.1| ybxB protein [Bacillus anthracis str. CDC 684]
 gi|228776346|gb|EEM24699.1| hypothetical protein bthur0001_870 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229266463|gb|ACQ48100.1| ybxB protein [Bacillus anthracis str. A0248]
          Length = 199

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S 
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSSV 117

Query: 267 KEFTQAM 273
            E    M
Sbjct: 118 YENVDGM 124


>gi|228912840|ref|ZP_04076487.1| hypothetical protein bthur0012_890 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846776|gb|EEM91781.1| hypothetical protein bthur0012_890 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 213

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S 
Sbjct: 72  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQSSV 131

Query: 267 KEFTQAM 273
            E    M
Sbjct: 132 YENVDGM 138


>gi|324506298|gb|ADY42693.1| tRNA (uracil-5-)-methyltransferase A [Ascaris suum]
          Length = 693

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 31/176 (17%)

Query: 213 LLELYCGNGNFSLVL------ARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           +L++ CG G   L L      ++   R  ++ +E+   ++E A+ N + N     +   +
Sbjct: 525 ILDVCCGTGTIGLCLLSLLKNSKSAGRRYLVGIEVVPEAIEDAKCNASENMFTEEECCFV 584

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV----DPPRSGLDDATV---GMVQAYPH 317
           S K        E  F  L+     S +     V    DPPR+G+ +  V    M+ +   
Sbjct: 585 SGKA-------EEVFRGLRHYMPTSVKLDEANVVAILDPPRAGIHEKVVLGCRMLSSLKR 637

Query: 318 ILYISCNPD-------SLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++++SC P         LCR  S        T+  +   D FP T+H E  V L R
Sbjct: 638 LIFVSCEPSLALKNLVDLCRPRSKKYDGEPFTLTSITPVDMFPQTKHCEWVVQLDR 693


>gi|229027949|ref|ZP_04184102.1| hypothetical protein bcere0028_880 [Bacillus cereus AH1271]
 gi|228733337|gb|EEL84166.1| hypothetical protein bcere0028_880 [Bacillus cereus AH1271]
          Length = 213

 Score = 43.5 bits (101), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S 
Sbjct: 72  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSSV 131

Query: 267 KEFTQAM 273
            E    M
Sbjct: 132 YENVDGM 138


>gi|229089232|ref|ZP_04220513.1| hypothetical protein bcere0021_870 [Bacillus cereus Rock3-42]
 gi|228694071|gb|EEL47753.1| hypothetical protein bcere0021_870 [Bacillus cereus Rock3-42]
          Length = 164

 Score = 43.1 bits (100), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S 
Sbjct: 23  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQSSV 82

Query: 267 KEFTQAM 273
            E    M
Sbjct: 83  YENVDGM 89


>gi|313680356|ref|YP_004058095.1| sam-dependent methyltransferase [Oceanithermus profundus DSM 14977]
 gi|313153071|gb|ADR36922.1| SAM-dependent methyltransferase [Oceanithermus profundus DSM 14977]
          Length = 393

 Score = 43.1 bits (100), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 12/87 (13%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+++   G F+L +ARH   V AV+ +  ++EAAR N A N + N++        FT+A 
Sbjct: 224 LDVFAYQGLFALHMARHVAEVEAVDSSAAALEAARENAALNGLENLR--------FTEA- 274

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPP 300
                F+ L++      R+  + +DPP
Sbjct: 275 ---NAFDLLRERQRAGERYDVVVLDPP 298


>gi|168703282|ref|ZP_02735559.1| methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 395

 Score = 43.1 bits (100), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 13/90 (14%)

Query: 213 LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L+ +C +G F L  AR     VL ++ ++P++E AR N A N + NV            
Sbjct: 225 FLDAFCYSGGFGLHAARAGAAEVLCLDGSEPALELARRNAALNGLENV------------ 272

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           A  R   FN L  +     +F  + +DPP+
Sbjct: 273 AFERVNVFNHLGTLATSGRKFDVVVLDPPK 302


>gi|328953673|ref|YP_004371007.1| hypothetical protein Desac_1995 [Desulfobacca acetoxidans DSM
           11109]
 gi|328453997|gb|AEB09826.1| hypothetical protein Desac_1995 [Desulfobacca acetoxidans DSM
           11109]
          Length = 386

 Score = 43.1 bits (100), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 12/108 (11%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           G+ +   E  LAA    QG++L+ +   G F+L +A H   V+AVE +  S+  A+ N  
Sbjct: 197 GLFLDQRENRLAAAAWAQGEVLDCFSYQGGFALHVASHAQHVVAVESSALSLGLAQDNAR 256

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N ++NV  ++ +  +F            LK     S  +  I +DPP
Sbjct: 257 LNRMHNVDWIQANCFDF------------LKKAHASSKFYDLIILDPP 292


>gi|288957174|ref|YP_003447515.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909482|dbj|BAI70971.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 443

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 19/155 (12%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A  G    + +L+ G G FS+ LA+    V AVE  + +V A           +V+ +R+
Sbjct: 299 AGVGQAARIADLFAGVGTFSIPLAQQAS-VHAVEGDEAAVTALG--------RSVQGLRL 349

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISC 323
           +++      RR+   N L   +++  R+  +  DPPR+G       +  A  P ++ +SC
Sbjct: 350 TAE------RRDLFENPLGVKELN--RYDAVVFDPPRAGAAAQAAALAGARVPRVVGVSC 401

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           NP S  RD  +L    + + ++   DQF ++ HME
Sbjct: 402 NPASFARDARVLVDGGYRLVKVWPVDQFLWSAHME 436


>gi|85706915|ref|ZP_01038005.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp. 217]
 gi|85668526|gb|EAQ23397.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp. 217]
          Length = 417

 Score = 42.7 bits (99), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRDLSI-LSTTHTIERLALFD 348
           RF    +DPPR+G +     + ++    L Y+SCNP +  RD  + L+  + +  + + D
Sbjct: 339 RFDAAVIDPPRAGAEAQIAEIAKSRLRCLAYVSCNPVTFARDARVLLAAGYKMGPVRVVD 398

Query: 349 QFPYTRHME 357
           QF ++ H+E
Sbjct: 399 QFRWSSHVE 407


>gi|194434182|ref|ZP_03066450.1| ribosomal RNA small subunit methyltransferase C [Shigella
           dysenteriae 1012]
 gi|194417619|gb|EDX33720.1| ribosomal RNA small subunit methyltransferase C [Shigella
           dysenteriae 1012]
 gi|320179333|gb|EFW54291.1| Ribosomal RNA small subunit methyltransferase C [Shigella boydii
           ATCC 9905]
 gi|332083687|gb|EGI88905.1| ribosomal RNA small subunit methyltransferase C [Shigella
           dysenteriae 155-74]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDIGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|332346417|gb|AEE59751.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           UMNK88]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++ +  +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDSLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|225862153|ref|YP_002747531.1| ybxB protein [Bacillus cereus 03BB102]
 gi|229182495|ref|ZP_04309746.1| hypothetical protein bcere0004_880 [Bacillus cereus BGSC 6E1]
 gi|225786254|gb|ACO26471.1| ybxB protein [Bacillus cereus 03BB102]
 gi|228600950|gb|EEK58519.1| hypothetical protein bcere0004_880 [Bacillus cereus BGSC 6E1]
          Length = 199

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   ++  V++ + ++E A+ N A N + NV I + S 
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQDRKIHMVDVNERALELAKENAANNKIGNVHIFQSSV 117

Query: 267 KEFTQAM 273
            E    M
Sbjct: 118 YENVDGM 124


>gi|332083363|gb|EGI88594.1| ribosomal RNA small subunit methyltransferase C [Shigella boydii
           5216-82]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDIGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|225873910|ref|YP_002755369.1| hypothetical protein ACP_2325 [Acidobacterium capsulatum ATCC
           51196]
 gi|225792716|gb|ACO32806.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 452

 Score = 42.7 bits (99), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 8/97 (8%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           AA +   G  L++    G F+L LA+   RV  V+I++ ++E A  N+AAN+      + 
Sbjct: 270 AAARHAHGQALDICTYQGGFALHLAQVCPRVTGVDISRAALEVAELNLAANY----SALA 325

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            S  ++ +A      F+ L+D       + TI +DPP
Sbjct: 326 ASEVDWIEA----NAFDLLRDWSDAGNAYDTIVLDPP 358


>gi|118475870|ref|YP_893021.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
 gi|118415095|gb|ABK83514.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
          Length = 213

 Score = 42.7 bits (99), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   ++  V++ + ++E A+ N A N + NV I + S 
Sbjct: 72  IKGDILDVGCGYGPIGLSLAKEFQDRKIHMVDVNERALELAKENAANNKIGNVHIFQSSV 131

Query: 267 KEFTQAM 273
            E    M
Sbjct: 132 YENVDGM 138


>gi|110808160|ref|YP_691680.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella flexneri 5
           str. 8401]
 gi|122956950|sp|Q0SX40|RSMC_SHIF8 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|110617708|gb|ABF06375.1| putative enzyme [Shigella flexneri 5 str. 8401]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V +
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVES 247


>gi|331240302|ref|XP_003332802.1| tRNA (uracil-5-)-methyltransferase [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309311792|gb|EFP88383.1| tRNA (uracil-5-)-methyltransferase [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 514

 Score = 42.7 bits (99), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 18/121 (14%)

Query: 156 NKTKICLDRDYVDERLTVAGRTL--IYRQIENSFTQPNAGI----NVHMLEWVLAA--TK 207
           ++++IC+     D +  V  + L   + Q   SF Q N  I      +M+E ++     +
Sbjct: 385 DESRICV----TDHKTIVREKVLDKNFEQNAGSFFQNNPSILGPFMSYMIEELIPTKTPR 440

Query: 208 GIQGD------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           GI  D      L++ YCG+G FS+ LA+ F +   +E++  S+  A+ N   N + N   
Sbjct: 441 GIDEDPEQHEYLVDAYCGSGLFSISLAQFFTKTTGIELSSDSLRYAKRNADLNKITNASF 500

Query: 262 V 262
           +
Sbjct: 501 I 501


>gi|331681354|ref|ZP_08381991.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli H299]
 gi|331081575|gb|EGI52736.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli H299]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|254037381|ref|ZP_04871458.1| ribosomal RNA small subunit methyltransferase C [Escherichia sp.
           1_1_43]
 gi|226840487|gb|EEH72489.1| ribosomal RNA small subunit methyltransferase C [Escherichia sp.
           1_1_43]
 gi|323935213|gb|EGB31573.1| methyltransferase small domain-containing protein [Escherichia coli
           E1520]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTI--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|170021670|ref|YP_001726624.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli ATCC
           8739]
 gi|188494749|ref|ZP_03002019.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           53638]
 gi|291285749|ref|YP_003502567.1| 16S RNA G1207 methylase RsmC [Escherichia coli O55:H7 str. CB9615]
 gi|300918454|ref|ZP_07135051.1| methyltransferase small domain protein [Escherichia coli MS 115-1]
 gi|300932046|ref|ZP_07147341.1| methyltransferase small domain protein [Escherichia coli MS 187-1]
 gi|300946754|ref|ZP_07161002.1| methyltransferase small domain protein [Escherichia coli MS 116-1]
 gi|300959114|ref|ZP_07171200.1| methyltransferase small domain protein [Escherichia coli MS 175-1]
 gi|301646887|ref|ZP_07246733.1| methyltransferase small domain protein [Escherichia coli MS 146-1]
 gi|307136569|ref|ZP_07495925.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli H736]
 gi|312966083|ref|ZP_07780309.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           2362-75]
 gi|331640412|ref|ZP_08341560.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli H736]
 gi|226712947|sp|B1IS49|RSMC_ECOLC RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|169756598|gb|ACA79297.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli ATCC 8739]
 gi|188489948|gb|EDU65051.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           53638]
 gi|209748988|gb|ACI72801.1| ribosomal RNA small subunit methyltransferase [Escherichia coli]
 gi|209748994|gb|ACI72804.1| ribosomal RNA small subunit methyltransferase [Escherichia coli]
 gi|284924549|emb|CBG37688.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           042]
 gi|290765622|gb|ADD59583.1| 16S RNA G1207 methylase RsmC [Escherichia coli O55:H7 str. CB9615]
 gi|300314262|gb|EFJ64046.1| methyltransferase small domain protein [Escherichia coli MS 175-1]
 gi|300414377|gb|EFJ97687.1| methyltransferase small domain protein [Escherichia coli MS 115-1]
 gi|300453578|gb|EFK17198.1| methyltransferase small domain protein [Escherichia coli MS 116-1]
 gi|300460191|gb|EFK23684.1| methyltransferase small domain protein [Escherichia coli MS 187-1]
 gi|301074940|gb|EFK89746.1| methyltransferase small domain protein [Escherichia coli MS 146-1]
 gi|312289326|gb|EFR17220.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           2362-75]
 gi|320644112|gb|EFX13187.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O157:H- str. 493-89]
 gi|320649429|gb|EFX17965.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O157:H- str. H 2687]
 gi|320654830|gb|EFX22799.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660682|gb|EFX28143.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665519|gb|EFX32569.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323960144|gb|EGB55788.1| methyltransferase small domain-containing protein [Escherichia coli
           H489]
 gi|323965372|gb|EGB60828.1| methyltransferase small domain-containing protein [Escherichia coli
           M863]
 gi|327250301|gb|EGE62020.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           STEC_7v]
 gi|331040158|gb|EGI12365.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli H736]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|15804942|ref|NP_290984.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O157:H7 EDL933]
 gi|15834583|ref|NP_313356.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|168750994|ref|ZP_02776016.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4113]
 gi|168766650|ref|ZP_02791657.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776653|ref|ZP_02801660.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781658|ref|ZP_02806665.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785012|ref|ZP_02810019.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC869]
 gi|168797941|ref|ZP_02822948.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC508]
 gi|195937642|ref|ZP_03083024.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806907|ref|ZP_03249244.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814485|ref|ZP_03255814.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819277|ref|ZP_03259597.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398157|ref|YP_002273891.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4115]
 gi|217326219|ref|ZP_03442303.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796366|ref|YP_003081203.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|261226727|ref|ZP_05941008.1| 16S rRNA m2G1207 methylase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256889|ref|ZP_05949422.1| 16S rRNA m2G1207 methylase [Escherichia coli O157:H7 str. FRIK966]
 gi|81764381|sp|Q8X510|RSMC_ECO57 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|226712940|sp|B5Z4Q2|RSMC_ECO5E RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|12519394|gb|AAG59551.1|AE005668_6 putative enzyme [Escherichia coli O157:H7 str. EDL933]
 gi|13364807|dbj|BAB38752.1| ribosomal RNA small subunit methyltransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187768028|gb|EDU31872.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014927|gb|EDU53049.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000759|gb|EDU69745.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4076]
 gi|189364171|gb|EDU82590.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4486]
 gi|189375045|gb|EDU93461.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC869]
 gi|189379587|gb|EDU98003.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC508]
 gi|208726708|gb|EDZ76309.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735762|gb|EDZ84449.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739400|gb|EDZ87082.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159557|gb|ACI36990.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC4115]
 gi|209748990|gb|ACI72802.1| ribosomal RNA small subunit methyltransferase [Escherichia coli]
 gi|209748992|gb|ACI72803.1| ribosomal RNA small subunit methyltransferase [Escherichia coli]
 gi|209748996|gb|ACI72805.1| ribosomal RNA small subunit methyltransferase [Escherichia coli]
 gi|217322440|gb|EEC30864.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595766|gb|ACT75127.1| 16S rRNA m2G1207 methylase [Escherichia coli O157:H7 str. TW14359]
 gi|320190514|gb|EFW65164.1| Ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. EC1212]
 gi|320638709|gb|EFX08370.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O157:H7 str. G5101]
 gi|326345317|gb|EGD69060.1| Ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. 1125]
 gi|326346829|gb|EGD70563.1| Ribosomal RNA small subunit methyltransferase C [Escherichia coli
           O157:H7 str. 1044]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|24115600|ref|NP_710110.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella flexneri 2a
           str. 301]
 gi|30065609|ref|NP_839780.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|81837976|sp|Q820Z6|RSMC_SHIFL RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|24054937|gb|AAN45817.1| putative enzyme [Shigella flexneri 2a str. 301]
 gi|30043873|gb|AAP19592.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|281603708|gb|ADA76692.1| RRNA (Guanine-N(2)-)-methyltransferase [Shigella flexneri 2002017]
 gi|313646274|gb|EFS10736.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri
           2a str. 2457T]
 gi|332748881|gb|EGJ79305.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri
           4343-70]
 gi|332749133|gb|EGJ79556.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri
           K-671]
 gi|332749660|gb|EGJ80076.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri
           2747-71]
 gi|332768755|gb|EGJ98934.1| 16S rRNA methyltransferase [Shigella flexneri 2930-71]
 gi|333009463|gb|EGK28919.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri
           K-218]
 gi|333022399|gb|EGK41637.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri
           K-304]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|333010461|gb|EGK29894.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri
           VA-6]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|309704829|emb|CBJ04180.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           ETEC H10407]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|218698207|ref|YP_002405874.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           55989]
 gi|237704107|ref|ZP_04534588.1| ribosomal RNA small subunit methyltransferase C [Escherichia sp.
           3_2_53FAA]
 gi|260847187|ref|YP_003224965.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O103:H2 str.
           12009]
 gi|300905357|ref|ZP_07123127.1| methyltransferase small domain protein [Escherichia coli MS 84-1]
 gi|301303471|ref|ZP_07209594.1| methyltransferase small domain protein [Escherichia coli MS 124-1]
 gi|226712939|sp|B7LEL6|RSMC_ECO55 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|218354939|emb|CAV02161.1| 16S RNA m2G1207 methylase [Escherichia coli 55989]
 gi|226902019|gb|EEH88278.1| ribosomal RNA small subunit methyltransferase C [Escherichia sp.
           3_2_53FAA]
 gi|257762334|dbj|BAI33831.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O103:H2 str.
           12009]
 gi|281181513|dbj|BAI57843.1| ribosomal RNA small subunit methyltransferase [Escherichia coli
           SE15]
 gi|300402766|gb|EFJ86304.1| methyltransferase small domain protein [Escherichia coli MS 84-1]
 gi|300841198|gb|EFK68958.1| methyltransferase small domain protein [Escherichia coli MS 124-1]
 gi|315255771|gb|EFU35739.1| methyltransferase small domain protein [Escherichia coli MS 85-1]
 gi|315284963|gb|EFU44408.1| methyltransferase small domain protein [Escherichia coli MS 110-3]
 gi|323163257|gb|EFZ49088.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           E128010]
 gi|323955326|gb|EGB51098.1| methyltransferase small domain-containing protein [Escherichia coli
           H263]
          Length = 343

 Score = 42.7 bits (99), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|323975871|gb|EGB70967.1| methyltransferase small domain-containing protein [Escherichia coli
           TW10509]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|333011350|gb|EGK30764.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri
           K-272]
 gi|333012245|gb|EGK31627.1| ribosomal RNA small subunit methyltransferase C [Shigella flexneri
           K-227]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|47570394|ref|ZP_00241034.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus G9241]
 gi|47552936|gb|EAL11347.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus G9241]
          Length = 199

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A  N A N + NV I + S 
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAEENAANNRIGNVHIFQSSV 117

Query: 267 KEFTQAM 273
            E    M
Sbjct: 118 YENVDGM 124


>gi|331650856|ref|ZP_08351884.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli M718]
 gi|331051310|gb|EGI23359.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli M718]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|229083421|ref|ZP_04215769.1| hypothetical protein bcere0022_1010 [Bacillus cereus Rock3-44]
 gi|228699854|gb|EEL52491.1| hypothetical protein bcere0022_1010 [Bacillus cereus Rock3-44]
          Length = 213

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+GD+L++ CG G   L LA+ F    V  V++ + ++E A+ N A N ++NV+I + S
Sbjct: 72  IKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALELAKENAANNKIDNVRIFQSS 130


>gi|301330281|ref|ZP_07222935.1| methyltransferase small domain protein [Escherichia coli MS 78-1]
 gi|300843740|gb|EFK71500.1| methyltransferase small domain protein [Escherichia coli MS 78-1]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|293408055|ref|ZP_06651895.1| rsmC [Escherichia coli B354]
 gi|291472306|gb|EFF14788.1| rsmC [Escherichia coli B354]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|260858545|ref|YP_003232436.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O26:H11 str.
           11368]
 gi|257757194|dbj|BAI28696.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O26:H11 str.
           11368]
 gi|323157742|gb|EFZ43847.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           EPECa14]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|108762459|ref|YP_630466.1| hypothetical protein MXAN_2245 [Myxococcus xanthus DK 1622]
 gi|108466339|gb|ABF91524.1| hypothetical protein MXAN_2245 [Myxococcus xanthus DK 1622]
          Length = 401

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           H+L W+   TK  + +++EL CG G+ +   A+    V   +I  PSV AA+  + A  +
Sbjct: 59  HVLPWLARYTKLGKANVVELGCGTGSSTAAFAQVASHVTGYDIHAPSVRAAQSRMKALGL 118

Query: 257 NNVKIVRMSSKEFTQAMRRE 276
            NV    +   +  + +R+E
Sbjct: 119 RNVDTRVVEPAKLLEQLRQE 138


>gi|296117766|ref|ZP_06836350.1| SAM-dependent methyltransferase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295969497|gb|EFG82738.1| SAM-dependent methyltransferase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 438

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 18/152 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPS-VEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +LY G G F   +AR           KP+ V +  Y+ AA  +N   + +      +   
Sbjct: 284 DLYGGVGVFVPAIARSLG-----SPQKPARVISVDYSPAATALNQSDLEQYELDVVS--- 335

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRD 331
                 +R++ +         + +DPPR+G  LD  +     A   ++++ C+P +  RD
Sbjct: 336 ------DRVEKVAAQLPGPTAVVLDPPRTGAGLDVVSTVASVAPQRVVHVGCDPATFARD 389

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLL 362
           ++  +     ++RL+L + FP T H E   LL
Sbjct: 390 INYWNEHGFQVQRLSLVNAFPGTHHFEVIALL 421


>gi|82546721|ref|YP_410668.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella boydii Sb227]
 gi|123557836|sp|Q31SW8|RSMC_SHIBS RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|81248132|gb|ABB68840.1| putative enzyme [Shigella boydii Sb227]
 gi|332090318|gb|EGI95416.1| ribosomal RNA small subunit methyltransferase C [Shigella boydii
           3594-74]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + + + F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPSVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANCVEG 247


>gi|331666196|ref|ZP_08367077.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli TA271]
 gi|331066407|gb|EGI38284.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli TA271]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANCVEG 247


>gi|322514824|ref|ZP_08067843.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
 gi|322119206|gb|EFX91347.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
          Length = 93

 Score = 42.4 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 9/75 (12%)

Query: 191 NAGINVHM----LEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           N  +N  M    LEW+ L+A    Q  +L+L+CG GNF+L +A+    V+ VE  +P V 
Sbjct: 2   NGNLNEKMVDKALEWLNLSA----QDRVLDLFCGMGNFTLPIAKQAGFVVGVESVQPMVA 57

Query: 246 AARYNIAANHVNNVK 260
            A+ N   + + NV+
Sbjct: 58  QAKQNQDTSGLKNVE 72


>gi|157156493|ref|YP_001465889.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           E24377A]
 gi|157163818|ref|YP_001461136.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli HS]
 gi|209921836|ref|YP_002295920.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli SE11]
 gi|218556905|ref|YP_002389819.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli IAI1]
 gi|256020001|ref|ZP_05433866.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella sp. D9]
 gi|300815995|ref|ZP_07096218.1| methyltransferase small domain protein [Escherichia coli MS 107-1]
 gi|300824407|ref|ZP_07104520.1| methyltransferase small domain protein [Escherichia coli MS 119-7]
 gi|307313695|ref|ZP_07593314.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli W]
 gi|309795645|ref|ZP_07690061.1| methyltransferase small domain protein [Escherichia coli MS 145-7]
 gi|331680480|ref|ZP_08381139.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli H591]
 gi|332281147|ref|ZP_08393560.1| ribosomal RNA small subunit methyltransferase C [Shigella sp. D9]
 gi|226712937|sp|A7ZVR0|RSMC_ECO24 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|226712943|sp|B7LXT2|RSMC_ECO8A RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|226712945|sp|A8A899|RSMC_ECOHS RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|226712949|sp|B6I2Q2|RSMC_ECOSE RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|157069498|gb|ABV08753.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           HS]
 gi|157078523|gb|ABV18231.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           E24377A]
 gi|209915095|dbj|BAG80169.1| ribosomal RNA small subunit methyltransferase [Escherichia coli
           SE11]
 gi|218363674|emb|CAR01333.1| 16S RNA m2G1207 methylase [Escherichia coli IAI1]
 gi|300523049|gb|EFK44118.1| methyltransferase small domain protein [Escherichia coli MS 119-7]
 gi|300531202|gb|EFK52264.1| methyltransferase small domain protein [Escherichia coli MS 107-1]
 gi|306906518|gb|EFN37031.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli W]
 gi|308120769|gb|EFO58031.1| methyltransferase small domain protein [Escherichia coli MS 145-7]
 gi|315063673|gb|ADT78000.1| 16S rRNA m(2)G1207 methyltransferase [Escherichia coli W]
 gi|320200514|gb|EFW75100.1| Ribosomal RNA small subunit methyltransferase C [Escherichia coli
           EC4100B]
 gi|323380246|gb|ADX52514.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli KO11]
 gi|323945890|gb|EGB41935.1| methyltransferase small domain-containing protein [Escherichia coli
           H120]
 gi|324016914|gb|EGB86133.1| methyltransferase small domain [Escherichia coli MS 117-3]
 gi|324118324|gb|EGC12218.1| methyltransferase small domain-containing protein [Escherichia coli
           E1167]
 gi|331071943|gb|EGI43279.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli H591]
 gi|332103499|gb|EGJ06845.1| ribosomal RNA small subunit methyltransferase C [Shigella sp. D9]
          Length = 343

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANCVEG 247


>gi|261885016|ref|ZP_06009055.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 36

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 25/32 (78%)

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +L +L  TH++++ A+FDQF +T H+EC V+L
Sbjct: 2   NLKLLCKTHSVDKFAIFDQFVHTNHIECAVVL 33


>gi|213423951|ref|ZP_03356931.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 355

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 17/122 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A
Sbjct: 237 MWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCR 330
                +                + V+PPR G+       + Q  P  I+Y SCN  ++ +
Sbjct: 297 QGETPDL---------------VLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQ 341

Query: 331 DL 332
           D+
Sbjct: 342 DI 343


>gi|15612687|ref|NP_240990.1| hypothetical protein BH0124 [Bacillus halodurans C-125]
 gi|10172736|dbj|BAB03843.1| BH0124 [Bacillus halodurans C-125]
          Length = 201

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 20/98 (20%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   + LAR      V  V++ + +++ A+ N  ANHV NV + R  S
Sbjct: 58  IEGDVLDVGCGYGPIGISLARDGGERSVHMVDVNERAIDLAKRNATANHVKNVVVYR--S 115

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSG 303
             F Q   R+               F  I  +PP R+G
Sbjct: 116 DLFQQVQDRQ---------------FAAIVTNPPIRAG 138


>gi|74314805|ref|YP_313224.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella sonnei Ss046]
 gi|260871094|ref|YP_003237496.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O111:H- str.
           11128]
 gi|123615410|sp|Q3YU23|RSMC_SHISS RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|73858282|gb|AAZ90989.1| putative enzyme [Shigella sonnei Ss046]
 gi|257767450|dbj|BAI38945.1| 16S rRNA m2G1207 methylase RsmC [Escherichia coli O111:H- str.
           11128]
 gi|320175421|gb|EFW50523.1| Ribosomal RNA small subunit methyltransferase C [Shigella
           dysenteriae CDC 74-1112]
 gi|320183349|gb|EFW58203.1| Ribosomal RNA small subunit methyltransferase C [Shigella flexneri
           CDC 796-83]
 gi|323166178|gb|EFZ51956.1| ribosomal RNA small subunit methyltransferase C [Shigella sonnei
           53G]
 gi|323176273|gb|EFZ61865.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           1180]
          Length = 343

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANCVEG 247


>gi|325499880|gb|EGC97739.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia fergusonii
           ECD227]
          Length = 343

 Score = 42.0 bits (97), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN +  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGIEG 247


>gi|323181910|gb|EFZ67322.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           1357]
          Length = 333

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 134 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 188

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 189 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANCVEG 237


>gi|154286016|ref|XP_001543803.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150407444|gb|EDN02985.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 475

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 15/95 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L ++I+  S+EAAR N  AN + N       +    + 
Sbjct: 369 LLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARANKLANTGFAAADAAAIFK- 427

Query: 273 MRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLDD 306
                        D+     KT+ V DPPR G D+
Sbjct: 428 -------------DVPYPPDKTLLVIDPPRKGCDN 449


>gi|255282216|ref|ZP_05346771.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
 gi|255267164|gb|EET60369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
          Length = 64

 Score = 42.0 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           I+YISC P SL RDL++L    +  ER+   D FP T H+E    L R
Sbjct: 15  IVYISCKPTSLARDLAVLQQHGYKAERVCCVDLFPGTYHVETVCRLSR 62


>gi|56418632|ref|YP_145950.1| hypothetical protein GK0097 [Geobacillus kaustophilus HTA426]
 gi|56378474|dbj|BAD74382.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 261

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 20/99 (20%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ GDLL++ CG G   L LA+ F   RV  +++ + ++E A+ N  AN ++N  I +  
Sbjct: 118 GVAGDLLDVGCGYGPIGLALAKSFPNRRVHMIDVNERALELAQENKQANGIDNAVIYK-- 175

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSG 303
           S  F++               +   RF  +  +PP R+G
Sbjct: 176 SDLFSE---------------VGEQRFAAVVTNPPIRAG 199


>gi|300939355|ref|ZP_07154023.1| methyltransferase small domain protein [Escherichia coli MS 21-1]
 gi|300455759|gb|EFK19252.1| methyltransferase small domain protein [Escherichia coli MS 21-1]
          Length = 343

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D       V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYNVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|320195321|gb|EFW69949.1| Ribosomal RNA small subunit methyltransferase C [Escherichia coli
           WV_060327]
          Length = 343

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANSVEG 247


>gi|261417598|ref|YP_003251280.1| methyltransferase small [Geobacillus sp. Y412MC61]
 gi|261374055|gb|ACX76798.1| methyltransferase small [Geobacillus sp. Y412MC61]
          Length = 202

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 20/99 (20%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ GDLL++ CG G   L LA+ F   RV  +++ + ++E A+ N  AN ++N  I +  
Sbjct: 59  GVAGDLLDVGCGYGPIGLALAKSFPNRRVHMIDVNERALELAQENKQANGIDNAVIYK-- 116

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSG 303
           S  F++               +   RF  +  +PP R+G
Sbjct: 117 SDLFSE---------------VGEQRFAAVVTNPPIRAG 140


>gi|301022273|ref|ZP_07186171.1| methyltransferase small domain protein [Escherichia coli MS 196-1]
 gi|299881323|gb|EFI89534.1| methyltransferase small domain protein [Escherichia coli MS 196-1]
          Length = 343

 Score = 42.0 bits (97), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   ++   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLMLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|26251256|ref|NP_757296.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           CFT073]
 gi|227885143|ref|ZP_04002948.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           83972]
 gi|300980808|ref|ZP_07175189.1| methyltransferase small domain protein [Escherichia coli MS 45-1]
 gi|301048334|ref|ZP_07195364.1| methyltransferase small domain protein [Escherichia coli MS 185-1]
 gi|331661001|ref|ZP_08361933.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli TA206]
 gi|81472610|sp|Q8FA64|RSMC_ECOL6 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|26111689|gb|AAN83870.1|AE016772_48 Ribosomal RNA small subunit methyltransferase C [Escherichia coli
           CFT073]
 gi|227837972|gb|EEJ48438.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           83972]
 gi|300299794|gb|EFJ56179.1| methyltransferase small domain protein [Escherichia coli MS 185-1]
 gi|300409125|gb|EFJ92663.1| methyltransferase small domain protein [Escherichia coli MS 45-1]
 gi|307556603|gb|ADN49378.1| 16S RNA G1207 methylase RsmC [Escherichia coli ABU 83972]
 gi|315293340|gb|EFU52692.1| methyltransferase small domain protein [Escherichia coli MS 153-1]
 gi|315298365|gb|EFU57620.1| methyltransferase small domain protein [Escherichia coli MS 16-3]
 gi|331052043|gb|EGI24082.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli TA206]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANSVEG 247


>gi|256850958|ref|ZP_05556347.1| RsmD family RNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260661172|ref|ZP_05862086.1| RsmD family RNA methyltransferase [Lactobacillus jensenii
           115-3-CHN]
 gi|282934127|ref|ZP_06339405.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 208-1]
 gi|256616020|gb|EEU21208.1| RsmD family RNA methyltransferase [Lactobacillus jensenii 27-2-CHN]
 gi|260548109|gb|EEX24085.1| RsmD family RNA methyltransferase [Lactobacillus jensenii
           115-3-CHN]
 gi|281301741|gb|EFA94007.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 208-1]
          Length = 183

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 14/92 (15%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
           G +L+LY G+G  ++  ++R FD  +  +I   +V+  + N+A  H     ++ +MS K 
Sbjct: 43  GAVLDLYGGSGALAIEAVSRGFDHAVITDINYAAVQIIKKNVALTHEEEKFEVFKMSDKV 102

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                        LK ++ H Y F  +F+DPP
Sbjct: 103 ------------ALKFLNEHDYHFDIVFLDPP 122


>gi|330876401|gb|EGH10550.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 49

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 319 LYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           LY+SCNP +L RD + ++S  + ++R  + D FP T H+E   L 
Sbjct: 1   LYVSCNPATLARDTVELISQGYRLKRAGILDMFPQTAHVEAMALF 45


>gi|315616262|gb|EFU96881.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           3431]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247


>gi|145594035|ref|YP_001158332.1| deoxyribonuclease [Salinispora tropica CNB-440]
 gi|145303372|gb|ABP53954.1| deoxyribonuclease/rho motif-related TRAM [Salinispora tropica
           CNB-440]
          Length = 412

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 10/75 (13%)

Query: 295 IFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDL-SILSTTHTIERLALFD 348
           + +DPPRSG   A  G+V+A        + Y++C+P +  RD+         +  L  FD
Sbjct: 333 VVLDPPRSG---AGAGVVRAVAGTGARAVAYVACDPAAFARDVRGFAELGWRLTALRGFD 389

Query: 349 QFPYTRHME-CGVLL 362
            FP T+H+E  G+LL
Sbjct: 390 LFPMTQHVELVGLLL 404


>gi|331666038|ref|ZP_08366932.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli TA143]
 gi|331057089|gb|EGI29083.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli TA143]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247


>gi|227330267|ref|ZP_03834291.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 34

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/32 (59%), Positives = 25/32 (78%), Gaps = 2/32 (6%)

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDL 332
           R+G +  TV +VQAYP ILYISCNP++L  +L
Sbjct: 4   RTGCE--TVKLVQAYPRILYISCNPETLSNNL 33


>gi|215489682|ref|YP_002332113.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215267754|emb|CAS12216.1| 16S rRNA m2G1207 methylase [Escherichia coli O127:H6 str. E2348/69]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247


>gi|193070621|ref|ZP_03051559.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           E110019]
 gi|192956104|gb|EDV86569.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           E110019]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247


>gi|219669847|ref|YP_002460282.1| methyltransferase [Desulfitobacterium hafniense DCB-2]
 gi|219540107|gb|ACL21846.1| methyltransferase [Desulfitobacterium hafniense DCB-2]
          Length = 180

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 24/148 (16%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L+ G GN +L  L+R     + +E ++ + +  R NI    +   +++ M +  + +
Sbjct: 45  VLDLFAGTGNLALEALSRGAKEAVLIEKSRTAQQIIRENIDHMGIEQARLIGMDAFAYLE 104

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
             R ER              F  IF+DPP         G+V+    +L   C    L   
Sbjct: 105 QHREER--------------FDLIFIDPPYH------QGLVEKSLKLLAAPCR---LTDS 141

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECG 359
             I++ T   E L  +D F   +  E G
Sbjct: 142 GVIIAETAKDENLESYDPFEIKKTGEYG 169


>gi|321477153|gb|EFX88112.1| hypothetical protein DAPPUDRAFT_221341 [Daphnia pulex]
          Length = 275

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 9/100 (9%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           E   +A R + +R       +P A +   ++E++     G     ++  CG+G  SL+L+
Sbjct: 11  ESSVLASRYIDFR------PKPPARLADRIVEFLKEKYTGDLSVCVDAGCGSGQCSLLLS 64

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            HF +VLA +I+   +E A+   + NH  N++ V   +++
Sbjct: 65  SHFQKVLATDISASQIEVAK---SQNHPPNIEFVASPAEQ 101


>gi|16132189|ref|NP_418788.1| 16S rRNA m(2)G1207 methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|82779621|ref|YP_405970.1| 16S ribosomal RNA m2G1207 methyltransferase [Shigella dysenteriae
           Sd197]
 gi|89111078|ref|AP_004858.1| 16S RNA m2G1207 methylase [Escherichia coli str. K-12 substr.
           W3110]
 gi|170083756|ref|YP_001733076.1| 16S RNA m2G1207 methylase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|218561546|ref|YP_002394459.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli S88]
 gi|238903457|ref|YP_002929253.1| 16S rRNA m2G1207 methylase [Escherichia coli BW2952]
 gi|253775000|ref|YP_003037831.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254164296|ref|YP_003047406.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli B
           str. REL606]
 gi|293417843|ref|ZP_06660465.1| rsmC [Escherichia coli B185]
 gi|309787410|ref|ZP_07682022.1| ribosomal RNA small subunit methyltransferase C [Shigella
           dysenteriae 1617]
 gi|312970060|ref|ZP_07784242.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           1827-70]
 gi|732118|sp|P39406|RSMC_ECOLI RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|123560843|sp|Q327M6|RSMC_SHIDS RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|226712938|sp|B7MNC1|RSMC_ECO45 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|226712944|sp|B1XFI0|RSMC_ECODH RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|537211|gb|AAA97267.1| ORF_f343b [Escherichia coli str. K-12 substr. MG1655]
 gi|1790830|gb|AAC77324.1| 16S rRNA m(2)G1207 methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|81243769|gb|ABB64479.1| putative enzyme [Shigella dysenteriae Sd197]
 gi|85677109|dbj|BAE78359.1| 16S RNA m2G1207 methylase [Escherichia coli str. K12 substr. W3110]
 gi|169891591|gb|ACB05298.1| 16S RNA m2G1207 methylase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|218368315|emb|CAR06134.1| 16S RNA m2G1207 methylase [Escherichia coli S88]
 gi|238859733|gb|ACR61731.1| 16S rRNA m2G1207 methylase [Escherichia coli BW2952]
 gi|242379893|emb|CAQ34729.1| 16S rRNA m[2]G1207 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253326044|gb|ACT30646.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976199|gb|ACT41870.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli B
           str. REL606]
 gi|253980356|gb|ACT46026.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|260450819|gb|ACX41241.1| rRNA (guanine-N(2)-)-methyltransferase [Escherichia coli DH1]
 gi|291430561|gb|EFF03559.1| rsmC [Escherichia coli B185]
 gi|308924988|gb|EFP70483.1| ribosomal RNA small subunit methyltransferase C [Shigella
           dysenteriae 1617]
 gi|310337558|gb|EFQ02669.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           1827-70]
 gi|315138923|dbj|BAJ46082.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli DH1]
 gi|323171382|gb|EFZ57029.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           LT-68]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247


>gi|116624370|ref|YP_826526.1| type 11 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227532|gb|ABJ86241.1| Methyltransferase type 11 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 246

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT-- 270
           +L+L CG G  +  L++HFD VLA++I++P +  AR   +A ++   ++   S+ EF   
Sbjct: 60  VLDLGCGAGLLAQELSKHFDSVLAIDISEPMLAIARAKRSAPNI-EYRLADASTAEFEGE 118

Query: 271 -QAMRREREFNRLKDIDIHSYRFKTIFV 297
             A+     F+ + D+     RFK +  
Sbjct: 119 FDAVVSHTTFHHIADVAGTITRFKPMLA 146


>gi|331645067|ref|ZP_08346178.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli M605]
 gi|330909815|gb|EGH38325.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           AA86]
 gi|331045824|gb|EGI17943.1| ribosomal RNA small subunit methyltransferase C
           (rRNA(guanine-N(2)-)-methyltransferase) (16S rRNA
           m2G1207methyltransferase) [Escherichia coli M605]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANSVEG 247


>gi|218703063|ref|YP_002410692.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           IAI39]
 gi|226712941|sp|B7NVD9|RSMC_ECO7I RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|218373049|emb|CAR20939.1| 16S RNA m2G1207 methylase [Escherichia coli IAI39]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANSVEG 247


>gi|297528473|ref|YP_003669748.1| methyltransferase small [Geobacillus sp. C56-T3]
 gi|319765256|ref|YP_004130757.1| methyltransferase small [Geobacillus sp. Y412MC52]
 gi|297251725|gb|ADI25171.1| methyltransferase small [Geobacillus sp. C56-T3]
 gi|317110122|gb|ADU92614.1| methyltransferase small [Geobacillus sp. Y412MC52]
          Length = 200

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 20/99 (20%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ GDLL++ CG G   L LA+ F   RV  +++ + ++E A+ N  AN ++N  I +  
Sbjct: 57  GVAGDLLDVGCGYGPIGLALAKSFPNRRVHMIDVNERALELAQENKQANGIDNAVIYK-- 114

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSG 303
           S  F++               +   RF  +  +PP R+G
Sbjct: 115 SDLFSE---------------VGEQRFAAVVTNPPIRAG 138


>gi|218708048|ref|YP_002415567.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           UMN026]
 gi|293403039|ref|ZP_06647136.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           FVEC1412]
 gi|298378566|ref|ZP_06988450.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           FVEC1302]
 gi|300899328|ref|ZP_07117593.1| methyltransferase small domain protein [Escherichia coli MS 198-1]
 gi|301027007|ref|ZP_07190391.1| methyltransferase small domain protein [Escherichia coli MS 69-1]
 gi|226712948|sp|B7NH38|RSMC_ECOLU RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|218435145|emb|CAR16103.1| 16S RNA m2G1207 methylase [Escherichia coli UMN026]
 gi|291429954|gb|EFF02968.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           FVEC1412]
 gi|298280900|gb|EFI22401.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           FVEC1302]
 gi|300357063|gb|EFJ72933.1| methyltransferase small domain protein [Escherichia coli MS 198-1]
 gi|300395231|gb|EFJ78769.1| methyltransferase small domain protein [Escherichia coli MS 69-1]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247


>gi|89895418|ref|YP_518905.1| hypothetical protein DSY2672 [Desulfitobacterium hafniense Y51]
 gi|89334866|dbj|BAE84461.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 180

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 24/148 (16%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L+ G GN +L  L+R     + +E ++ + +  R NI    V   +++ M +  + +
Sbjct: 45  VLDLFAGTGNLALEALSRGAKEAVLIEKSRTAQQIIRENIDHMGVEQARLIGMDAFAYLE 104

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
             R ER              F  IF+DPP         G+V+    +L    +P  L   
Sbjct: 105 QHREER--------------FDLIFIDPPYH------QGLVEKSLKLL---ADPCRLTYS 141

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECG 359
             I++ T   E L  +D F   +  E G
Sbjct: 142 GVIIAETAKDENLESYDPFEIKKTGEYG 169


>gi|297205840|ref|ZP_06923235.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
           jensenii JV-V16]
 gi|297148966|gb|EFH29264.1| possible rRNA (guanine-N(2)-)-methyltransferase [Lactobacillus
           jensenii JV-V16]
          Length = 183

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 14/92 (15%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
           G +L+LY G+G  ++  ++R FD  +  +I   +V+  + N+A  H     ++ +MS K 
Sbjct: 43  GAVLDLYGGSGALAIEAVSRGFDHAVITDINYAAVQIIKKNVALTHEEGKFEVFKMSDK- 101

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              A+R   E         H Y F  +F+DPP
Sbjct: 102 --VALRFLNE---------HDYHFDIVFLDPP 122


>gi|191167391|ref|ZP_03029206.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           B7A]
 gi|256025289|ref|ZP_05439154.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia sp.
           4_1_40B]
 gi|190902531|gb|EDV62265.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           B7A]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247


>gi|194439306|ref|ZP_03071385.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           101-1]
 gi|194421788|gb|EDX37796.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           101-1]
 gi|323969515|gb|EGB64807.1| methyltransferase small domain-containing protein [Escherichia coli
           TA007]
          Length = 343

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  +RH    R+   +++ P+VEA+R  +AAN V  
Sbjct: 199 KVLDVGCGAGVLSVAFSRHSPKIRLTLCDVSAPAVEASRATLAANGVEG 247


>gi|295397937|ref|ZP_06807994.1| methyltransferase domain protein [Aerococcus viridans ATCC 11563]
 gi|294973822|gb|EFG49592.1| methyltransferase domain protein [Aerococcus viridans ATCC 11563]
          Length = 217

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D+      +  R+  ++     F++ N      ++   L   + + GDLL+L  G G
Sbjct: 26  LGHDFKQYETVIFDRSFTFKTDSGVFSRDNLDFGTRVMLEALDLDQLVPGDLLDLGAGYG 85

Query: 222 NFSLVLARHF-DRVL-AVEIAKPSVEAARYNIAANHVNNV 259
              +++     DR +  V+I++ ++  A+ N AANHV+NV
Sbjct: 86  PVGVIMGTMLPDRAIYGVDISERAIGLAKDNAAANHVDNV 125


>gi|90420130|ref|ZP_01228038.1| putative RNA methyltransferase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335464|gb|EAS49214.1| putative RNA methyltransferase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 408

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 15/154 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G+G F+L LA    RV AVE      EAA              ++  + E    
Sbjct: 268 VADLFSGSGTFALRLAVQ-SRVHAVE-----SEAAPLAAMTAAWRTRPGLKPLTTERRDL 321

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRD 331
            RR      LK  D        +  DPPR+G +  +  +  +    +  +SCNP ++ RD
Sbjct: 322 YRRPIPAKELKAYD-------GLVFDPPRAGAEAVSQEIAASKISRVAAVSCNPVTMARD 374

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L IL      +  +   DQF ++RH+E   LL R
Sbjct: 375 LRILVDGGFRLVEVTPVDQFLWSRHVEAVALLER 408


>gi|151567849|pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
          Length = 343

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247


>gi|90422657|ref|YP_531027.1| RNA methyltransferase [Rhodopseudomonas palustris BisB18]
 gi|90104671|gb|ABD86708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas
           palustris BisB18]
          Length = 412

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 22/150 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L+CG G F+L LA    +VLA + ++P+  AA              ++  + E    
Sbjct: 272 IVDLFCGVGPFALRLAAKA-KVLAYD-SEPAAIAALQA-----AAKTPGLKPLTAEVRDL 324

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYISCNPDSL 328
            RR      L+D+D        +  DPPR G     +    G V     ++ +SCN  + 
Sbjct: 325 FRRPLVTQELRDVD-------AVVFDPPRQGAQAQAEKLAAGKVAT---VVAVSCNAATF 374

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHME 357
            RD  IL    + I  +   DQF +T H+E
Sbjct: 375 ARDARILIDGGYQIGTVTPVDQFRHTPHVE 404


>gi|4432832|gb|AAD20681.1| putative RNA methyltransferase [Arabidopsis thaliana]
          Length = 850

 Score = 41.2 bits (95), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 5/43 (11%)

Query: 291 RFKTI--FVDPPRSGLDDATVGMVQAYP---HILYISCNPDSL 328
           +FK +   VDPPRSGL  A +  ++ +P    ++YISCNP++L
Sbjct: 736 QFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYISCNPETL 778


>gi|297822425|ref|XP_002879095.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297324934|gb|EFH55354.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 818

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 5/43 (11%)

Query: 291 RFKTI--FVDPPRSGLDDATVGMVQAYP---HILYISCNPDSL 328
           +FK +   VDPPRSGL  A +  ++ +P    ++YISCNP++L
Sbjct: 704 QFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYISCNPETL 746


>gi|303240625|ref|ZP_07327140.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2]
 gi|302591862|gb|EFL61595.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2]
          Length = 226

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 14/56 (25%), Positives = 38/56 (67%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L++ CG+GN S++L+++F+ V+ ++I+   ++ A +   A  + N++ + M +++
Sbjct: 42  VLDIGCGSGNKSILLSKYFEHVIGIDISDSFLQIAEHKKNAKGIKNIQFINMDAEK 97


>gi|85859442|ref|YP_461644.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB]
 gi|85722533|gb|ABC77476.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB]
          Length = 190

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 15/111 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA-NHVNNVKIVRMSSKEF 269
           + L+LY G GN  +  L+R  D V+ VE     V + + N+         +I RM   E 
Sbjct: 43  EFLDLYAGTGNVGMEALSRGADVVVFVEKISVLVTSLKRNLEQFGFQGRYRIFRM---EV 99

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
            +A+    E             F  IF DPP R G  D T+G+++ YP IL
Sbjct: 100 EKAVAHLAE---------GGMCFDLIFADPPYRKGFVDRTIGLIKDYPSIL 141


>gi|77919821|ref|YP_357636.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77545904|gb|ABA89466.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380]
          Length = 249

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 189 QPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSV 244
           Q   G    +   +L A  G QG   + +L CG+G   L+L+R  D  R++ VEI + S 
Sbjct: 25  QKKGGYRFSLDPVLLCAFAGFQGVERICDLGCGSGVIPLILSRTSDARRIVGVEIQEESA 84

Query: 245 EAARYNIAANHVNN-VKIVRMSSKEFTQAMRRE 276
           + AR ++  N V + V+IVR   +   + +  E
Sbjct: 85  DRARRSVLLNGVQDRVEIVRRDVRSVREVLAAE 117


>gi|154251239|ref|YP_001412063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parvibaculum
           lavamentivorans DS-1]
 gi|154155189|gb|ABS62406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parvibaculum
           lavamentivorans DS-1]
          Length = 415

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 13/175 (7%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F QP       ++  V A   G    + +L+ G G FS  LAR    V AVE      
Sbjct: 244 GAFLQPTREGEAALVRLV-AQGVGKSVRIADLFAGCGTFSASLARSAT-VHAVE-----G 296

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E+A     A  V      +  S          R+  R   +      F  +  DPPR+G 
Sbjct: 297 ESASLAALARAVRE----QGPSLGLKPVTHETRDLARRPLLRSELDSFDAVVFDPPRAGA 352

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
                 + ++  P +  +SCNP +  RD  ++L   + +  L   DQF ++ H+E
Sbjct: 353 AAQAEEIARSEVPVVAAVSCNPATFARDARTLLDGGYALSELTPVDQFLWSPHIE 407


>gi|238855245|ref|ZP_04645564.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 269-3]
 gi|260664605|ref|ZP_05865457.1| RsmD family RNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|282932462|ref|ZP_06337887.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 208-1]
 gi|313471935|ref|ZP_07812427.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 1153]
 gi|238832137|gb|EEQ24455.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 269-3]
 gi|239529139|gb|EEQ68140.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 1153]
 gi|260561670|gb|EEX27642.1| RsmD family RNA methyltransferase [Lactobacillus jensenii SJ-7A-US]
 gi|281303411|gb|EFA95588.1| RNA methyltransferase, RsmD family [Lactobacillus jensenii 208-1]
          Length = 183

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 14/92 (15%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
           G  L+LY G+G  ++  ++R FD  +  +I   +V+  + N+A  H     ++ +MS K 
Sbjct: 43  GITLDLYGGSGALAIEAVSRGFDHAVITDINYAAVQIIKKNVALTHEEEKFEVFKMSDKV 102

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                        LK +  H Y+F  +F+DPP
Sbjct: 103 ------------ALKFLHEHDYKFDMVFLDPP 122


>gi|218551620|ref|YP_002385412.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|226712954|sp|B7LNK6|RSMC_ESCF3 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|218359162|emb|CAQ91825.1| 16S RNA m2G1207 methylase [Escherichia fergusonii ATCC 35469]
          Length = 343

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN +  
Sbjct: 225 LCDVSAPAVEASRATLAANGIEG 247


>gi|115377525|ref|ZP_01464725.1| SAM-dependent methyltransferases [Stigmatella aurantiaca DW4/3-1]
 gi|310820069|ref|YP_003952427.1| hypothetical protein STAUR_2802 [Stigmatella aurantiaca DW4/3-1]
 gi|115365465|gb|EAU64500.1| SAM-dependent methyltransferases [Stigmatella aurantiaca DW4/3-1]
 gi|309393141|gb|ADO70600.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 394

 Score = 40.8 bits (94), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 19/142 (13%)

Query: 178 LIYRQIENSF-----TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
            +Y + EN F          G  +  ++  L A +  +G+ L+L+  +G F+L L+R  D
Sbjct: 185 FVYHEGENRFEVDLLGDMKTGAFLDQVDNHLRAGELARGEALDLFSYHGGFALALSRTCD 244

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            VLAVE    +    + N   N   NV +   ++            F+ L+       RF
Sbjct: 245 TVLAVEQDPKASGRIQANAERNGRTNVTVENANA------------FDVLRRFADTGRRF 292

Query: 293 KTIFVDPPRSGLDDATVGMVQA 314
            T+ +DPP  GL     G+  A
Sbjct: 293 DTVVLDPP--GLAKRREGLATA 312


>gi|194228102|ref|XP_001492969.2| PREDICTED: similar to Putative methyltransferase CXorf34 homolog
           [Equus caballus]
          Length = 611

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 38/182 (20%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           ++F Q N      ML   +    G+  +  LL++ CG G   L LA++  +VL +E+ + 
Sbjct: 466 DAFFQINTS-GAEMLYQTVGELSGVNSNTILLDICCGTGVIGLSLAQYTSQVLGIELVEQ 524

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +VE AR+  A    N+ +++        QA+R  R    L            +FV     
Sbjct: 525 AVEDARWTAA---FNDHRVI--------QAIRNCRAIRTL------------VFVSCKPQ 561

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G  + T  +V+       + C P+S  +   +L     + +    D FP+T H E  +L 
Sbjct: 562 G--ETTRNVVE-------LCCPPNSAKK---LLGEPFVLRQAVPVDLFPHTPHCELVLLF 609

Query: 363 VR 364
            R
Sbjct: 610 TR 611


>gi|324112056|gb|EGC06034.1| methyltransferase small domain-containing protein [Escherichia
           fergusonii B253]
          Length = 343

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN +  
Sbjct: 225 LCDVSAPAVEASRATLAANGIEG 247


>gi|290558986|gb|EFD92368.1| methylase [Candidatus Parvarchaeum acidophilus ARMAN-5]
 gi|326422531|gb|EGD71927.1| Methylase [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS']
          Length = 193

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 17/99 (17%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +L A K  +G++L+++ G+G  ++  A+    V AV+I   +++AAR N   N + N+K 
Sbjct: 20  LLRAVKYAKGEVLDMFTGSGIIAINAAKTAHNVTAVDINPFAIDAARKNSKINGIKNIKF 79

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++  S  F++               + + +F  I+ +PP
Sbjct: 80  IK--SDLFSE---------------LENKKFDVIYANPP 101


>gi|295098508|emb|CBK87598.1| 16S rRNA m(2)G 1207 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 342

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNN 258
           T   +G +L++ CG G  S VLA H  +V     +++ P+VEA+R  +AAN +  
Sbjct: 193 TPHTKGKVLDVGCGAGVLSTVLASHSPKVRLTLCDVSAPAVEASRATLAANGIEG 247


>gi|322433866|ref|YP_004216078.1| hypothetical protein AciX9_0224 [Acidobacterium sp. MP5ACTX9]
 gi|321161593|gb|ADW67298.1| hypothetical protein AciX9_0224 [Acidobacterium sp. MP5ACTX9]
          Length = 423

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           AA +   G  L++    G F+L LA+  DRV  V+ ++ ++E A  N+A N     +   
Sbjct: 243 AAARYAHGRALDVCTYQGGFALHLAQTCDRVTGVDTSRAALEVADANLALNPHLKARTDW 302

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           M +            F+ L++ +    RF TI +DPP
Sbjct: 303 MEAD----------AFDLLREYESTGERFDTIVLDPP 329


>gi|23097566|ref|NP_691032.1| hypothetical protein OB0111 [Oceanobacillus iheyensis HTE831]
 gi|22775789|dbj|BAC12067.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 204

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF-DRVLA-VEIAKPSVEAARYNIAANHVNNVKI 261
           I GD+L++ CG G   L LA  F DR ++ V+I   +VE A+ N + N++ NV I
Sbjct: 61  INGDILDVGCGYGPIGLSLAAEFEDRAVSMVDINDRAVELAKRNASVNNITNVTI 115


>gi|219110012|ref|XP_002176758.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411293|gb|EEC51221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 695

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 16/160 (10%)

Query: 213 LLELYCGNGNFSL--VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           LL++ CG G   L  V       V+ V+I++P++  AR N   N              F 
Sbjct: 521 LLDVCCGTGTIGLTCVTEGVVAEVVGVDISEPAINDARKNAELNGCGQYDKDTGGLIHFV 580

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA---YPHILYISCNP-D 326
            A R E+    +      S +     VDP R GL    V  ++A      I+Y+SCNP  
Sbjct: 581 -AGRAEQIMTSVISDAKQSGKKLVAVVDPARDGLHADVVRALRANERIKRIVYVSCNPTG 639

Query: 327 SLCRDLSILSTTHT---------IERLALFDQFPYTRHME 357
           +L RD ++     T         +   +  D FP T H E
Sbjct: 640 TLVRDAALFCAPPTKRYNGSAFRVVAASPVDMFPGTAHTE 679


>gi|300926393|ref|ZP_07142190.1| methyltransferase small domain protein [Escherichia coli MS 182-1]
 gi|300417588|gb|EFK00899.1| methyltransferase small domain protein [Escherichia coli MS 182-1]
          Length = 343

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++    +   +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTV--KTLPGVFSRDGLDVGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  +A N V  
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAGNCVEG 247


>gi|320103066|ref|YP_004178657.1| PUA domain-containing protein [Isosphaera pallida ATCC 43644]
 gi|319750348|gb|ADV62108.1| PUA domain containing protein [Isosphaera pallida ATCC 43644]
          Length = 422

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 20/147 (13%)

Query: 203 LAATKGIQGD-LLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNV 259
           LAA +  +G  +L+LYC  G FSLV  +H   V  L  + +  +VE AR +   NH+   
Sbjct: 240 LAAARYARGRCVLDLYCHVGGFSLVALKHGGAVSSLGFDSSSVAVEFARRHAVINHLPT- 298

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
              R        A++  +   R          F  + VDPP+     +T G+ +A    +
Sbjct: 299 --ARFEVAHVPDALKMLKATGRT---------FGMVVVDPPK--FARSTKGVEEAVKAYV 345

Query: 320 YISCNPDSLCRDLSIL---STTHTIER 343
            ++C+  SL     IL   S +  IER
Sbjct: 346 RLNCDAVSLLEPDGILVTCSCSGLIER 372


>gi|224038935|gb|ACN38364.1| putative sisomicin methyltransferase [Micromonospora inyonensis]
          Length = 320

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           L++ CG+G  SLVLA  ++ VL V++   +V  +R N A N + NV
Sbjct: 128 LDMGCGSGVLSLVLADRYESVLGVDVNPRAVALSRLNAALNGLTNV 173


>gi|153835098|ref|ZP_01987765.1| putative methyltransferase [Vibrio harveyi HY01]
 gi|148868448|gb|EDL67556.1| putative methyltransferase [Vibrio harveyi HY01]
          Length = 199

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           Q   L+L+ G+G      A R  D+V  +E+   + +  + N+A+ + NN+++V   +  
Sbjct: 60  QAKCLDLFAGSGGLGFESASRQADQVTMIELNPQAFQQLQKNVASLNANNIQVVNTDAIS 119

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
           F Q                       +F+DPP R GL D TV +++
Sbjct: 120 FLQQ---------------PGTPHHVVFIDPPFRKGLLDETVTLLE 150


>gi|229542213|ref|ZP_04431273.1| methyltransferase small [Bacillus coagulans 36D1]
 gi|229326633|gb|EEN92308.1| methyltransferase small [Bacillus coagulans 36D1]
          Length = 200

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           +D   T+ G T  ++  +  F++        +L   L      +G +L++ CG G   L 
Sbjct: 17  IDFTFTLRGHTFHFQTDQGVFSKKEVDFGSRVL-LDLVTMPETEGPVLDMGCGYGPIGLA 75

Query: 227 LARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           LA  F    V  V+I   +VE A  N A NH++NV I
Sbjct: 76  LATSFPGRHVHMVDINTRAVELAEKNAARNHISNVSI 112


>gi|320527452|ref|ZP_08028633.1| RNA methyltransferase, RsmD family [Solobacterium moorei F0204]
 gi|320132165|gb|EFW24714.1| RNA methyltransferase, RsmD family [Solobacterium moorei F0204]
          Length = 186

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 16/108 (14%)

Query: 200 EWVLAATKGI--QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA-NH 255
           E V ++  G+   G +L+LY G+G   L  L+R +D  +  +I+K ++   R NI +   
Sbjct: 30  EAVFSSLGGMFDGGMVLDLYAGSGANGLEALSRGYDYAVFADISKDAIHVIRKNIESLRC 89

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   K++ M  K+    ++ E              RF+ +++DPP +G
Sbjct: 90  IGKTKVLHMPDKKALSLLKAE------------GLRFELVYLDPPYAG 125


>gi|85814038|emb|CAF31454.1| putative gentamicin methyltransferase [Micromonospora echinospora]
          Length = 321

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           L++ CG+G  SLVLA  ++ VL V++   +V  +R N A N + NV
Sbjct: 128 LDMGCGSGVLSLVLADRYESVLGVDVNPRAVALSRLNAALNGLTNV 173


>gi|170681708|ref|YP_001746825.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           SMS-3-5]
 gi|226712950|sp|B1LEH4|RSMC_ECOSM RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|170519426|gb|ACB17604.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           SMS-3-5]
          Length = 343

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN +  
Sbjct: 225 LCDVSAPAVEASRATLAANGIEG 247


>gi|220917304|ref|YP_002492608.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955158|gb|ACL65542.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 179

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 16/92 (17%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKE 268
           GD+L+LY G G  +L  L+R   R + VE  +P+ E  R N       + V++VR    E
Sbjct: 44  GDVLDLYAGTGALALEALSRGCARAVCVEADRPTAELLRRNAETCGWTDRVEVVRGRVPE 103

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              A+ R           +   RF   FVDPP
Sbjct: 104 ---ALAR-----------LAPGRFALAFVDPP 121


>gi|297618925|ref|YP_003707030.1| methyltransferase small [Methanococcus voltae A3]
 gi|297377902|gb|ADI36057.1| methyltransferase small [Methanococcus voltae A3]
          Length = 214

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 14/91 (15%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + D+L++ CG G   + LA   + V+  +I K SV  A+ NI  NHV N  I     K F
Sbjct: 56  EDDILDMGCGYGAIGISLADDVNSVIMTDINKRSVSLAKQNIKLNHVKNKNI-----KIF 110

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              +  E      KD      +F TI  +PP
Sbjct: 111 QGNLYEEVP----KDA-----KFDTIISNPP 132


>gi|254832455|ref|ZP_05237110.1| hypothetical protein Lmon1_13954 [Listeria monocytogenes 10403S]
          Length = 50

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           ++Y+SCNP +L RD+ IL+   +  +++   D FP T H+E   +L
Sbjct: 2   VVYVSCNPGTLARDMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 47


>gi|197124168|ref|YP_002136119.1| hypothetical protein AnaeK_3779 [Anaeromyxobacter sp. K]
 gi|196174017|gb|ACG74990.1| protein of unknown function Met10 [Anaeromyxobacter sp. K]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L+ +   G F+L LAR  +RV AVE+   +    R N A N   N+++V        
Sbjct: 218 GRCLDCFSYAGGFALHLARRAERVTAVEMQPVAAGLLRENAALNRAENLEVV-------- 269

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                E  F+ L+D       F  + +DPP
Sbjct: 270 ----EENAFDYLRDRSEEEPAFDLVVLDPP 295


>gi|197122519|ref|YP_002134470.1| methyltransferase [Anaeromyxobacter sp. K]
 gi|196172368|gb|ACG73341.1| methyltransferase [Anaeromyxobacter sp. K]
          Length = 179

 Score = 40.4 bits (93), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 16/92 (17%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKE 268
           GD+L+LY G G  +L  L+R   R + VE  +P+ E  R N       + V++VR    E
Sbjct: 44  GDVLDLYAGTGALALEALSRGCARAVCVEADRPTAELLRRNAETCGWADRVEVVRGRVPE 103

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              A+ R           +   RF   FVDPP
Sbjct: 104 ---ALAR-----------LAPGRFALAFVDPP 121


>gi|302389423|ref|YP_003825244.1| SAM-dependent methyltransferase [Thermosediminibacter oceani DSM
           16646]
 gi|302200051|gb|ADL07621.1| SAM-dependent methyltransferase [Thermosediminibacter oceani DSM
           16646]
          Length = 390

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 211 GDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            ++LE +C  G+F+L  AR+   +VLA + +K +VE AR N   N +N++        EF
Sbjct: 217 AEVLECFCYTGSFALSAARYGAKKVLAFDSSKDAVELARENAVLNGLNDI-------CEF 269

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +       F+ L+       +F  + +DPP
Sbjct: 270 QEG----NAFDVLRQFYDSRKKFDVVILDPP 296


>gi|86158158|ref|YP_464943.1| hypothetical protein Adeh_1733 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774669|gb|ABC81506.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 179

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 16/92 (17%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKE 268
           GD+L+LY G G  +L  L+R   R + VE  +P+ E  R N       + V++VR     
Sbjct: 44  GDVLDLYAGTGALALEALSRGCARAVCVEADRPTAELLRRNAETCGWADRVEVVR---GR 100

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +A+ R           +   RF   FVDPP
Sbjct: 101 VPEALAR-----------LAPGRFALAFVDPP 121


>gi|56477677|ref|YP_159266.1| SAM-dependent methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56313720|emb|CAI08365.1| predicted SAM-dependent methyltransferases [Aromatoleum aromaticum
           EbN1]
          Length = 396

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L  +C  G FSL  LA     VL+++ + P+++A R N+A N       +  S  E+ Q
Sbjct: 223 VLNCFCYTGGFSLQALAGGATSVLSIDSSGPALDAGRRNLAMN-----PQLDASRAEWLQ 277

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           A      F  L+ +     RF  I +DPP+
Sbjct: 278 A----DVFEALRVLKSEGRRFDLIVLDPPK 303


>gi|220918947|ref|YP_002494251.1| protein of unknown function Met10 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956801|gb|ACL67185.1| protein of unknown function Met10 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L+ +   G F+L LAR  +RV AVE+   +    R N A N   N+++V        
Sbjct: 218 GRCLDCFSYAGGFALHLARRAERVTAVEMQPVAAGLLRENAALNRAENLEVV-------- 269

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                E  F+ L+D       F  + +DPP
Sbjct: 270 ----EENAFDYLRDRSEEEPAFDLVVLDPP 295


>gi|296122426|ref|YP_003630204.1| methyltransferase small [Planctomyces limnophilus DSM 3776]
 gi|296014766|gb|ADG68005.1| methyltransferase small [Planctomyces limnophilus DSM 3776]
          Length = 393

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 18/113 (15%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A +   G++L+L C +  F +   RH +   V+ V+ +K +VE A  N+  N + +   V
Sbjct: 214 AAQFASGNMLDLCCYSAGFGMNALRHGEVTHVIGVDTSKIAVENATANVTRNGLADRYEV 273

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVG 310
           R               F  L +      RF+TI +DPP     RS +D    G
Sbjct: 274 RHGDA-----------FEVLTEFRNQGVRFQTIVLDPPKLVKSRSTMDSGLKG 315


>gi|86160140|ref|YP_466925.1| SAM-dependent methyltransferase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776651|gb|ABC83488.1| SAM-dependent methyltransferase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 389

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L+ +   G F+L LAR  +RV AVE+        R N A N   N+++V        
Sbjct: 218 GRCLDCFSYAGGFALQLARRAERVTAVEMQPVPAGLLRENAALNRAENLEVV-------- 269

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                E  F+ L+D       F  + +DPP
Sbjct: 270 ----EENAFDYLRDRSEEEPAFDLVVLDPP 295


>gi|183600473|ref|ZP_02961966.1| hypothetical protein PROSTU_04049 [Providencia stuartii ATCC 25827]
 gi|188019957|gb|EDU57997.1| hypothetical protein PROSTU_04049 [Providencia stuartii ATCC 25827]
          Length = 272

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 36/56 (64%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           LL++ CG G+  L LA+HF  ++ ++ ++  ++AA+    A  +NNV+  +++ ++
Sbjct: 63  LLDVGCGPGSVCLALAKHFTTIIGIDYSQGMLDAAQERAKAMDINNVRFEQLAWED 118


>gi|163792498|ref|ZP_02186475.1| methyltransferase, UbiE/COQ5 family protein [alpha proteobacterium
           BAL199]
 gi|159182203|gb|EDP66712.1| methyltransferase, UbiE/COQ5 family protein [alpha proteobacterium
           BAL199]
          Length = 217

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +LLE  CG G+ +L LA    R+ A++I+   V  AR    ++ V NV  +R +  +F
Sbjct: 52  ELLEFGCGTGSTALALAPDVARITAIDISSKMVGIARRKAESSGVANVAFLRAAIDDF 109


>gi|291300408|ref|YP_003511686.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290569628|gb|ADD42593.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 264

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           + +  +G    M E  LA   G++ D  +LEL CG G  ++ LAR   RV AVE+     
Sbjct: 20  YDRARSGYPARMYE-DLAELTGLKPDDHVLELGCGTGQATVSLARQGYRVTAVELGAGMA 78

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
             AR N+A+    +V++V  S +++    R
Sbjct: 79  TVARRNLAS--FPDVEVVNSSFEDWPLPSR 106


>gi|116621453|ref|YP_823609.1| SAM-dependent methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224615|gb|ABJ83324.1| SAM-dependent methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 387

 Score = 40.0 bits (92), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           AA     G  L+ +   G F+L LA   + V AV+ + P++EAAR N  AN ++N+
Sbjct: 209 AAQYARGGRALDCFTSTGGFALHLAPKCEHVEAVDSSGPALEAARANSTANGIDNI 264


>gi|161504897|ref|YP_001572009.1| 16S ribosomal RNA m2G1207 methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|226712971|sp|A9MRB9|RSMC_SALAR RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|160866244|gb|ABX22867.1| hypothetical protein SARI_03023 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 342

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
           GR  K  +     Y DE  ++ G  LI + +   F++    +   +L   L  T   +G 
Sbjct: 145 GRLEKQPLFSLEPYWDE-YSIDG--LIIKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGK 199

Query: 213 LLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNN 258
           +L++ CG G  S  LA H  +V     +++ P+VEA+R  +A N ++ 
Sbjct: 200 VLDVGCGAGVLSAALASHSPKVRLTLCDVSAPAVEASRATLAVNGLDG 247


>gi|254230124|ref|ZP_04923520.1| putative methyltransferase [Vibrio sp. Ex25]
 gi|151937369|gb|EDN56231.1| putative methyltransferase [Vibrio sp. Ex25]
          Length = 246

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           Q   L+L+ G+G      A R  ++V  VE+   + +  + N+A+ + NN+++V   +  
Sbjct: 107 QAKCLDLFAGSGGLGFESASRQAEQVTMVELNPQAFQQLQKNVASLNANNIQVVNTDALS 166

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
           F            LK      +    +F+DPP R GL D TV +++
Sbjct: 167 F------------LKQPGTAHH---VVFIDPPFRKGLLDETVALLE 197


>gi|56419633|ref|YP_146951.1| hypothetical protein GK1098 [Geobacillus kaustophilus HTA426]
 gi|56379475|dbj|BAD75383.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 198

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G+ L+L+ G+G   +  L+R  +RV+ V+  + +V+  R N+AA  +     +  +  E 
Sbjct: 43  GNGLDLFAGSGGLGIEALSRGIERVIFVDQDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 101

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                       LK +     RF  IF+DPP
Sbjct: 102 ----------RALKAVAKRGLRFAVIFLDPP 122


>gi|320169843|gb|EFW46742.1| methyltransferase [Capsaspora owczarzaki ATCC 30864]
          Length = 389

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 210 QGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
           Q  LL++ CG G+  ++ A+ F    +L VEIA   V  A+ +I  + + +NV++V+ S+
Sbjct: 153 QDTLLDVGCGCGDQDVLFAKTFQPKSILGVEIAPSQVAQAQCHIQRHGLESNVQVVQGSA 212

Query: 267 KEFTQAMRREREFNRLKDID-IHSYRFKTIFV 297
            +   + R  R+F+ +  +D  + Y  +  FV
Sbjct: 213 VDLAASCRAARQFSVVLSLDSAYHYALRRDFV 244


>gi|283788394|ref|YP_003368259.1| ribosomal RNA small subunit methyltransferase C [Citrobacter
           rodentium ICC168]
 gi|282951848|emb|CBG91558.1| ribosomal RNA small subunit methyltransferase C [Citrobacter
           rodentium ICC168]
          Length = 342

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--L 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+ LA H  +V   
Sbjct: 167 LTIKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVALASHSPKVRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN +  
Sbjct: 225 LCDVSAPAVEASRATLAANGIEG 247


>gi|262392911|ref|YP_003284765.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. Ex25]
 gi|262336505|gb|ACY50300.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. Ex25]
          Length = 199

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           Q   L+L+ G+G      A R  ++V  VE+   + +  + N+A+ + NN+++V   +  
Sbjct: 60  QAKCLDLFAGSGGLGFESASRQAEQVTMVELNPQAFQQLQKNVASLNANNIQVVNTDALS 119

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
           F            LK      +    +F+DPP R GL D TV +++
Sbjct: 120 F------------LKQPGTAHH---VVFIDPPFRKGLLDETVALLE 150


>gi|110644807|ref|YP_672537.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli 536]
 gi|191174543|ref|ZP_03036040.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           F11]
 gi|300992719|ref|ZP_07179996.1| methyltransferase small domain protein [Escherichia coli MS 200-1]
 gi|123147328|sp|Q0T8U3|RSMC_ECOL5 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|110346399|gb|ABG72636.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           536]
 gi|190905189|gb|EDV64831.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           F11]
 gi|300305215|gb|EFJ59735.1| methyltransferase small domain protein [Escherichia coli MS 200-1]
 gi|323189785|gb|EFZ75063.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           RN587/1]
 gi|324007717|gb|EGB76936.1| methyltransferase small domain protein [Escherichia coli MS 57-2]
 gi|324014050|gb|EGB83269.1| methyltransferase small domain protein [Escherichia coli MS 60-1]
          Length = 343

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +A N V  
Sbjct: 225 LCDVSAPAVEASRATLATNGVEG 247


>gi|71409126|ref|XP_806926.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT) [Trypanosoma
 gi|70870807|gb|EAN85075.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative [Trypanosoma cruzi]
          Length = 200

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 32/46 (69%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +L+L+CG G  ++ LAR +++V+AV+I   ++EAA+ N+    V +
Sbjct: 64  VLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGD 109


>gi|306815434|ref|ZP_07449583.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           NC101]
 gi|305851096|gb|EFM51551.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           NC101]
          Length = 343

 Score = 39.7 bits (91), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +A N V  
Sbjct: 225 LCDVSAPAVEASRATLATNGVEG 247


>gi|218692758|ref|YP_002400970.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli ED1a]
 gi|226712942|sp|B7MTB6|RSMC_ECO81 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|218430322|emb|CAR11192.1| 16S RNA m2G1207 methylase [Escherichia coli ED1a]
          Length = 343

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +A N V  
Sbjct: 225 LCDVSAPAVEASRATLATNGVEG 247


>gi|237729269|ref|ZP_04559750.1| 16S ribosomal RNA methyltransferase [Citrobacter sp. 30_2]
 gi|226908998|gb|EEH94916.1| 16S ribosomal RNA methyltransferase [Citrobacter sp. 30_2]
          Length = 343

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
           GR  K  +     Y DE  T     L  + +   F++    +   +L   L  T   +G 
Sbjct: 145 GRLEKQPVFDAEKYWDEYQT---ENLTIKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGK 199

Query: 213 LLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L++ CG G  S+ LA H  +V     +++  +VEA+R  +AAN +    I         
Sbjct: 200 VLDVGCGAGVLSVALASHSPKVRLTLCDVSAAAVEASRATLAANGIEGDVIAS------- 252

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                    N   D+   + RF  I  +PP
Sbjct: 253 ---------NVFSDV---TGRFDMIISNPP 270


>gi|170768477|ref|ZP_02902930.1| ribosomal RNA small subunit methyltransferase C [Escherichia
           albertii TW07627]
 gi|170122581|gb|EDS91512.1| ribosomal RNA small subunit methyltransferase C [Escherichia
           albertii TW07627]
          Length = 343

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            GR  K  +  D D      +V G T+  + +   F++        +L   L  T   +G
Sbjct: 144 FGRLEKQPV-FDADKFWGEYSVDGLTI--KTLPGVFSRDGLDAGSQLLLSTL--TPHTKG 198

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN 258
            +L++ CG G  S+  ARH    R+   +++ P+VEA+R  + AN +  
Sbjct: 199 KVLDIGCGTGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLVANGIEG 247


>gi|157147620|ref|YP_001454940.1| 16S ribosomal RNA m2G1207 methyltransferase [Citrobacter koseri
           ATCC BAA-895]
 gi|226712936|sp|A8ALZ1|RSMC_CITK8 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|157084825|gb|ABV14503.1| hypothetical protein CKO_03420 [Citrobacter koseri ATCC BAA-895]
          Length = 342

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--L 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S  LA H  +V   
Sbjct: 167 LTIKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSAALASHSPKVRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +AAN V  
Sbjct: 225 LCDVSAPAVEASRATLAANGVEG 247


>gi|319766111|ref|YP_004131612.1| methyltransferase [Geobacillus sp. Y412MC52]
 gi|317110977|gb|ADU93469.1| methyltransferase [Geobacillus sp. Y412MC52]
          Length = 204

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G+ L+L+ G+G   +  L+R  +RV+ V+  + +V+  R N+AA  +     +  +  E 
Sbjct: 49  GNGLDLFAGSGGLGIEALSRGIERVIFVDHDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 107

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                       LK +     RF  IF+DPP
Sbjct: 108 ----------RALKAVAKRGLRFAVIFLDPP 128


>gi|91214024|ref|YP_544010.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           UTI89]
 gi|117626683|ref|YP_860006.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli APEC
           O1]
 gi|122421235|sp|Q1R2D5|RSMC_ECOUT RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|226712946|sp|A1AJP2|RSMC_ECOK1 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|91075598|gb|ABE10479.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           UTI89]
 gi|115515807|gb|ABJ03882.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           APEC O1]
 gi|294491814|gb|ADE90570.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           IHE3034]
 gi|307629539|gb|ADN73843.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           UM146]
 gi|323950544|gb|EGB46422.1| methyltransferase small domain-containing protein [Escherichia coli
           H252]
          Length = 343

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +A N V  
Sbjct: 225 LCDVSAPAVEASRATLATNGVEG 247


>gi|296447863|ref|ZP_06889774.1| methyltransferase small [Methylosinus trichosporium OB3b]
 gi|296254604|gb|EFH01720.1| methyltransferase small [Methylosinus trichosporium OB3b]
          Length = 417

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 20/188 (10%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           T  G TL+      +F Q  A     +   V   + G  G + +L+CG G F+L LA   
Sbjct: 229 TAVGETLVV-PPPGAFLQATARGEAEIAARVEQGSAG--GRVADLFCGIGVFALRLAARA 285

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V AV+   P++E          +       M   E      R R+  R         R
Sbjct: 286 -QVTAVDSDAPAIE---------ALAKAARAAMLPIEA-----RTRDLFRSPLTAEELAR 330

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349
           F  +  DPPR+G       + + +   ++ +SC+  S  RD  S+    +    +   DQ
Sbjct: 331 FDAVIFDPPRAGAPAQAREIARSSVRRVVAVSCDAQSFARDAASLREGGYEAGVVTPIDQ 390

Query: 350 FPYTRHME 357
           F ++ H+E
Sbjct: 391 FRHSPHVE 398


>gi|315502657|ref|YP_004081544.1| deoxyribonuclease/rho motif-related tram [Micromonospora sp. L5]
 gi|315409276|gb|ADU07393.1| deoxyribonuclease/rho motif-related TRAM [Micromonospora sp. L5]
          Length = 436

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 87/206 (42%), Gaps = 47/206 (22%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGI-NVHMLEWVLAATKGIQG---DLLELYCGNGNFSL 225
           R T AGR         SFT P +G   VH      AA   + G   DLL+   G   + L
Sbjct: 250 RETAAGR---------SFTLPASGFWQVHP-----AAADALTGAVLDLLDPRPGETAWDL 295

Query: 226 ---------VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
                     LA   D  RV  VE A   V AAR N+A     +++ V + +     A+ 
Sbjct: 296 YGGAGLFAAALAERVDGARVTLVESAPDGVAAARQNLA-----DLRAVEVVAARVEAALS 350

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDL 332
           R R       +D+       + +DPPRSG   A V  V A     + Y++C+P +  RD+
Sbjct: 351 RRRITG---PVDL-------VVLDPPRSGAGAAVVRGVVAAGPRAVAYVACDPAAFARDV 400

Query: 333 SILSTTH-TIERLALFDQFPYTRHME 357
              +     +  L  FD FP T+H+E
Sbjct: 401 RTFAEAGWRLAALRGFDLFPMTQHVE 426


>gi|261419295|ref|YP_003252977.1| methyltransferase [Geobacillus sp. Y412MC61]
 gi|261375752|gb|ACX78495.1| methyltransferase [Geobacillus sp. Y412MC61]
          Length = 198

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G+ L+L+ G+G   +  L+R  +RV+ V+  + +V+  R N+AA  +     +  +  E 
Sbjct: 43  GNGLDLFAGSGGLGIEALSRGIERVIFVDHDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 101

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                       LK +     RF  IF+DPP
Sbjct: 102 ----------RALKAVAKRGLRFAVIFLDPP 122


>gi|329926113|ref|ZP_08280704.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
           HGF5]
 gi|328939387|gb|EGG35741.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
           HGF5]
          Length = 414

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           G+ G+  +++ YCG G  SL LA+H  +V  VEI K ++E AR
Sbjct: 372 GLTGEETVIDAYCGIGTISLFLAQHAKKVYGVEIVKEAIEDAR 414


>gi|297530735|ref|YP_003672010.1| methyltransferase [Geobacillus sp. C56-T3]
 gi|297253987|gb|ADI27433.1| methyltransferase [Geobacillus sp. C56-T3]
          Length = 204

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G+ L+L+ G+G   +  L+R  +RV+ V+  + +V+  R N+AA  +     +  +  E 
Sbjct: 49  GNGLDLFAGSGGLGIEALSRGIERVIFVDHDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 107

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                       LK +     RF  IF+DPP
Sbjct: 108 ----------RALKAVAKRGLRFAVIFLDPP 128


>gi|221194743|ref|ZP_03567800.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626]
 gi|221185647|gb|EEE18037.1| NusB/NOL1/NOP2/sun family protein [Atopobium rimae ATCC 49626]
          Length = 480

 Score = 39.7 bits (91), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 19/139 (13%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR------HFDRVLAVEIAKPSVEAARYNIAANH 255
            L A  G +  LLE+  G G  +++L +      H   + A++I    VE AR  +    
Sbjct: 245 ALLALSGREKTLLEIGQGRGTKTILLQQNAALLNHVLHITAIDIDPQKVEIARKRLVEAA 304

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH---SYRFKTIFVDPPRSGLDDATVGMV 312
           V+N    +++S  F  A    RE N      +    ++ F T+F+D P SG      G +
Sbjct: 305 VDN----QVTSVVFNAAELGAREANSEPPCKLPGELAHTFDTVFIDAPCSG-----AGTL 355

Query: 313 QAYPHILYISCNPDSLCRD 331
           + +P I + S +  ++C D
Sbjct: 356 RRHPEIGW-SLDEGAVCSD 373


>gi|297623419|ref|YP_003704853.1| methyltransferase small [Truepera radiovictrix DSM 17093]
 gi|297164599|gb|ADI14310.1| methyltransferase small [Truepera radiovictrix DSM 17093]
          Length = 402

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +G  L+++C +G F+L LAR  D V+AV+ +  ++       A N     + V       
Sbjct: 223 RGRALDVFCYHGGFALQLARRADEVVAVDSSAAALAELERGAAENGPEVARRV------- 275

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             + RR   F  L+       RF T+ +DPP
Sbjct: 276 --STRRGDAFELLRAAVRAGERFDTVVLDPP 304


>gi|269216929|ref|ZP_06160783.1| methyltransferase domain protein [Slackia exigua ATCC 700122]
 gi|269129736|gb|EEZ60820.1| methyltransferase domain protein [Slackia exigua ATCC 700122]
          Length = 279

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           +L++ CG+G + L LA     V+ ++I+   +EAAR    A  V NV+ V+
Sbjct: 69  VLDIGCGSGIYGLALASRVGEVVGIDISPKMIEAAREKACALDVRNVRFVQ 119


>gi|299533092|ref|ZP_07046477.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni
           S44]
 gi|298718869|gb|EFI59841.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni
           S44]
          Length = 296

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+    KG  G  L+  CG+G  ++  A+     V AV+I   +VE+  YN +ANHV 
Sbjct: 154 LRWIARQPKGTLGRTLDYGCGSGILAIGAAKFGATDVDAVDIDPAAVESTNYNTSANHVE 213


>gi|229003116|ref|ZP_04160963.1| hypothetical protein bmyco0002_1050 [Bacillus mycoides Rock1-4]
 gi|228758131|gb|EEM07329.1| hypothetical protein bmyco0002_1050 [Bacillus mycoides Rock1-4]
          Length = 199

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N V NV+I + S
Sbjct: 58  IKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALGLAKENAANNKVENVRIFQSS 116


>gi|222036112|emb|CAP78857.1| ribosomal RNA small subunit methyltransferase C [Escherichia coli
           LF82]
 gi|312948999|gb|ADR29826.1| 16S ribosomal RNA m2G1207 methyltransferase [Escherichia coli
           O83:H1 str. NRG 857C]
          Length = 343

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           L  + +   F++    +   +L   L  T   +G +L++ CG G  S+  ARH    R+ 
Sbjct: 167 LTVKTLPGVFSRDGLDVGSQLLLSTL--TPHTKGKVLDVGCGAGVLSVAFARHSPKIRLT 224

Query: 236 AVEIAKPSVEAARYNIAANHVNN 258
             +++ P+VEA+R  +A N V  
Sbjct: 225 LCDVSAPAVEASRATLATNGVEG 247


>gi|228989310|ref|ZP_04149301.1| hypothetical protein bpmyx0001_870 [Bacillus pseudomycoides DSM
           12442]
 gi|228770388|gb|EEM18961.1| hypothetical protein bpmyx0001_870 [Bacillus pseudomycoides DSM
           12442]
          Length = 213

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N V NV+I + S
Sbjct: 72  IKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALGLAKENAANNKVENVRIFQSS 130


>gi|228995491|ref|ZP_04155159.1| hypothetical protein bmyco0003_950 [Bacillus mycoides Rock3-17]
 gi|228764220|gb|EEM13099.1| hypothetical protein bmyco0003_950 [Bacillus mycoides Rock3-17]
          Length = 213

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N V NV+I + S
Sbjct: 72  IKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALGLAKENAANNKVENVRIFQSS 130


>gi|71409977|ref|XP_807306.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT) [Trypanosoma
 gi|70871278|gb|EAN85455.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative [Trypanosoma cruzi]
          Length = 250

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 32/46 (69%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +L+L+CG G  ++ LAR +++V+AV+I   ++EAA+ N+    V +
Sbjct: 64  VLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGD 109


>gi|264680219|ref|YP_003280129.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni
           CNB-2]
 gi|262210735|gb|ACY34833.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni
           CNB-2]
          Length = 298

 Score = 39.7 bits (91), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+    KG  G  L+  CG+G  ++  A+     V AV+I   +VE+  YN +ANHV 
Sbjct: 156 LRWIARQPKGTLGRTLDYGCGSGILAIGAAKFGATDVDAVDIDPAAVESTNYNTSANHVE 215


>gi|167627297|ref|YP_001677797.1| HemK family modification methylase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597298|gb|ABZ87296.1| modification methylase, HemK family [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 285

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 25/118 (21%)

Query: 200 EWVLAAT------KGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNI 251
           E V+AA       K  Q  +L+L  G+G  +L LA    +  V+AV++   +++ A+ N 
Sbjct: 100 EAVVAAVLDDIQDKNAQLKILDLGTGSGAIALALAEELPKSQVVAVDLYSKTLDVAKKNA 159

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            AN + NV        EF Q+   E         ++ + +F  I  +PP   +DDA +
Sbjct: 160 LANKIVNV--------EFMQSSWYE---------NLDATKFDIIVSNPPYIDVDDANI 200


>gi|322825679|gb|EFZ30569.1| proliferator-activated receptor-interacting protein interacting
           protein, putative [Trypanosoma cruzi]
          Length = 250

 Score = 39.7 bits (91), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 32/46 (69%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +L+L+CG G  ++ LAR +++V+AV+I   ++EAA+ N+    V +
Sbjct: 64  VLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGD 109


>gi|146310194|ref|YP_001175268.1| 16S ribosomal RNA m2G1207 methyltransferase [Enterobacter sp. 638]
 gi|226712951|sp|A4W687|RSMC_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|145317070|gb|ABP59217.1| 16S rRNA m(2)G 1207 methyltransferase [Enterobacter sp. 638]
          Length = 342

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNN 258
           T   +G +L++ CG G  S VLA H  +V     +++ P+VEA+R  +AAN +  
Sbjct: 193 TPHTKGKVLDVGCGAGVLSAVLASHSPKVRLTLSDVSAPAVEASRATLAANGLEG 247


>gi|218194201|gb|EEC76628.1| hypothetical protein OsI_14559 [Oryza sativa Indica Group]
          Length = 805

 Score = 39.3 bits (90), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 296 FVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSL 328
            VDPPR GL    +  ++ +P I   +YISCNPDSL
Sbjct: 699 IVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPDSL 734


>gi|260803097|ref|XP_002596428.1| hypothetical protein BRAFLDRAFT_130336 [Branchiostoma floridae]
 gi|229281683|gb|EEN52440.1| hypothetical protein BRAFLDRAFT_130336 [Branchiostoma floridae]
          Length = 774

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +++ CG+G  S +LA HF  VL +++++P +  A  N   N +NNV+
Sbjct: 327 VDIGCGSGQSSEILAPHFQHVLGIDVSEPQIAMASAN---NKLNNVE 370



 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +++ CG+G  S +LA HF  VL +++++P +  A  N   N +NNV+
Sbjct: 555 VDIGCGSGQSSEILAPHFQHVLGIDVSEPQIAMASAN---NKLNNVE 598


>gi|169335809|ref|ZP_02863002.1| hypothetical protein ANASTE_02235 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258547|gb|EDS72513.1| hypothetical protein ANASTE_02235 [Anaerofustis stercorihominis DSM
           17244]
          Length = 279

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 23/136 (16%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANH 255
           ++E+++   KGI  D+LE+  G+G  S+  A++ + V  L V+I + ++  A  NI  ++
Sbjct: 100 IVEYMIEHFKGITLDILEIGVGSGCISISTAKYLENVNILGVDINEKALSIANKNIEYHN 159

Query: 256 VNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGLDDATVGMV 312
           V++ VK +R    E  +                   +F  I  +PP  R  + +     V
Sbjct: 160 VDDRVKFIRSDIYENVEG------------------KFDVIISNPPYIRKDIIETLEDDV 201

Query: 313 QAYPHILYISCNPDSL 328
           + Y  IL +    D L
Sbjct: 202 KKYEPILALDGGEDGL 217


>gi|163803407|ref|ZP_02197282.1| hypothetical protein 1103602000602_AND4_16474 [Vibrio sp. AND4]
 gi|159172811|gb|EDP57656.1| hypothetical protein AND4_16474 [Vibrio sp. AND4]
          Length = 206

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           Q   L+L+ G+G      A R  ++V  +E+   + +  + N+A+ + NN++IV   +  
Sbjct: 60  QAKCLDLFAGSGGLGFESASRQAEQVTMIELNPQAFQQLQKNVASLNANNIQIVNTDAIH 119

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
           F Q                       +F+DPP R GL D TV +++
Sbjct: 120 FLQQ---------------PGTPHHVVFIDPPFRKGLLDETVTLLE 150


>gi|38346207|emb|CAD39345.2| OSJNBa0094O15.14 [Oryza sativa Japonica Group]
 gi|222628241|gb|EEE60373.1| hypothetical protein OsJ_13507 [Oryza sativa Japonica Group]
          Length = 865

 Score = 39.3 bits (90), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 296 FVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSL 328
            VDPPR GL    +  ++ +P I   +YISCNPDSL
Sbjct: 759 IVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPDSL 794


>gi|91227503|ref|ZP_01261840.1| hypothetical protein V12G01_09647 [Vibrio alginolyticus 12G01]
 gi|269968644|ref|ZP_06182641.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91188527|gb|EAS74819.1| hypothetical protein V12G01_09647 [Vibrio alginolyticus 12G01]
 gi|269826731|gb|EEZ81068.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 199

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           Q   L+L+ G+G      A R  ++V  VE+   + +  + N+A+ + NN+++V   +  
Sbjct: 60  QAKCLDLFAGSGGLGFESASRQAEQVTMVELNPQAFQQLQKNVASLNANNIQVVNTDALS 119

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
           F            LK      +    +F+DPP R GL D TV +++
Sbjct: 120 F------------LKQPGSAHH---VVFIDPPFRKGLLDETVALLE 150


>gi|242072140|ref|XP_002446006.1| hypothetical protein SORBIDRAFT_06g000450 [Sorghum bicolor]
 gi|241937189|gb|EES10334.1| hypothetical protein SORBIDRAFT_06g000450 [Sorghum bicolor]
          Length = 862

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 5/46 (10%)

Query: 288 HSYRFKTI--FVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSL 328
           ++ +FK +   VDPPR GL    +  ++ +P I   +YISCNP+SL
Sbjct: 746 NACQFKNVVAIVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPESL 791


>gi|219113673|ref|XP_002186420.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583270|gb|ACI65890.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 475

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHIL-YISCNPDSLCRDLSILSTTHTIERLALFDQ-- 349
           I VDPPR GLDD  +G +     P IL Y+SC  D+  RD   L      E L       
Sbjct: 395 IVVDPPRKGLDDVVLGAMAEVTRPQILVYVSCGFDAFQRDCKYLVQHGQWEVLHAEGHIL 454

Query: 350 FPYTRHMECGVLLVRK 365
           FP +  +E     VR+
Sbjct: 455 FPGSDAIETLAFFVRR 470


>gi|261334706|emb|CBH17700.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative,pseudogene
           [Trypanosoma brucei gambiense DAL972]
          Length = 251

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 30/41 (73%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +G  L+L+CG G  ++ LA+ F++V+AV+I   ++EAA+ N
Sbjct: 61  KGCCLDLFCGCGGDTVQLAQVFEKVIAVDIDPDAIEAAKKN 101


>gi|213857923|ref|ZP_03384894.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 281

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 187 FTQPNAGINVHM----LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           F Q N  +N  M    LEW+       +  +L+L+CG GNF+L LA     V+ VE  + 
Sbjct: 209 FIQVNEAVNQQMVARALEWLDVRA---EDRVLDLFCGMGNFTLPLATRAASVVGVEGVQA 265

Query: 243 SVEAARYN 250
            VE  R N
Sbjct: 266 LVEKGREN 273


>gi|330994335|ref|ZP_08318263.1| hypothetical protein SXCC_04228 [Gluconacetobacter sp. SXCC-1]
 gi|329758802|gb|EGG75318.1| hypothetical protein SXCC_04228 [Gluconacetobacter sp. SXCC-1]
          Length = 251

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A KG++  +L+L CG G+ +  LA H + V+  +I    ++A  +  A   +NNV  V
Sbjct: 35  LVAGKGLR-RVLDLGCGGGHVTYRLAPHVEEVVPCDITASMLDAVAHEAARQDLNNVATV 93

Query: 263 RMSSKEF 269
           +  ++E 
Sbjct: 94  QAPAEEL 100


>gi|296123662|ref|YP_003631440.1| methyltransferase type 11 [Planctomyces limnophilus DSM 3776]
 gi|296016002|gb|ADG69241.1| Methyltransferase type 11 [Planctomyces limnophilus DSM 3776]
          Length = 254

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 25/39 (64%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QGD+LE+ CG G  S  LAR    V AV+IA+  +E AR
Sbjct: 66  QGDVLEIGCGVGRLSHALARRTRHVFAVDIAQKLLEEAR 104


>gi|170750219|ref|YP_001756479.1| (uracil-5)-methyltransferase [Methylobacterium radiotolerans JCM
           2831]
 gi|170656741|gb|ACB25796.1| (uracil-5)-methyltransferase [Methylobacterium radiotolerans JCM
           2831]
          Length = 425

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 15/185 (8%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q  A     + +  LAA       + +L+ G G  +L +AR    V AVE    + 
Sbjct: 251 GGFLQATAAGQATLCDLTLAALGPRVRRVADLFAGCGPLTLAIARTAA-VHAVE--SDAA 307

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A  + AA   + ++  R++S+         R+  R   +      F  +  DPPR+G 
Sbjct: 308 ALAGLDRAARAASGLR--RITSER--------RDLFRRPLLPTELDPFDAVVFDPPRAGA 357

Query: 305 DDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           +     +  A  P ++ ++C+  +  RD + L +  + +E +   DQF ++ H+E   + 
Sbjct: 358 EAQARQIAAARVPLVIGVACDAGTFARDAATLVAGGYRLETVTPVDQFRHSGHVEMVGVF 417

Query: 363 VRKPS 367
            R+P+
Sbjct: 418 RREPA 422


>gi|239825684|ref|YP_002948308.1| methyltransferase small [Geobacillus sp. WCH70]
 gi|239805977|gb|ACS23042.1| methyltransferase small [Geobacillus sp. WCH70]
          Length = 200

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
            T+ G  L +      F++        +L       K + GD L++ CG G   L +A+ 
Sbjct: 21  FTLRGNELTFTTDSGVFSKREVDFGTRLLIETFEEPK-VDGDFLDVGCGYGPIGLSIAKA 79

Query: 231 FDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           F    V  ++I K ++E A  N  ANH+ N  I    S  F Q   +             
Sbjct: 80  FPNRHVDMIDINKRALELANENKHANHITNASIYE--SDLFAQVGDK------------- 124

Query: 289 SYRFKTIFVDPP-RSG 303
             +F  I  +PP R+G
Sbjct: 125 --KFAAILTNPPIRAG 138


>gi|119623240|gb|EAX02835.1| chromosome X open reading frame 34, isoform CRA_d [Homo sapiens]
          Length = 289

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 52/229 (22%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF----------- 223
           +L  R   ++F Q N      ML   +    G+  D  LL++ CG G +           
Sbjct: 72  SLKIRISPDAFFQINTA-GAEMLYRTVGELTGVNSDTILLDICCGTGKWKPRAESACCSA 130

Query: 224 --SLVLA-----------RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +LV             +H  RVL +E+ + +VE AR+  A N + N +     +++  
Sbjct: 131 PKALVACGGGRGEVVVVVQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKIL 190

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISC---- 323
             + + +E       D  S       V+P R+GL    +  ++ +  I   +++SC    
Sbjct: 191 PGLLKSKE-------DGQSI---VAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHG 240

Query: 324 ----NPDSLC----RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               N   LC        +L     +++    D FP+T H E  +L  R
Sbjct: 241 ESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 289


>gi|239623795|ref|ZP_04666826.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521826|gb|EEQ61692.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium
           1_7_47FAA]
          Length = 185

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 16/148 (10%)

Query: 174 AGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHF 231
           + R L+ + ++   T+P    I   +   +     G Q   L+L+ G+G   +  L+R  
Sbjct: 7   SARRLLLKTVDGMDTRPTTDRIKETLFNMLQPQIPGCQ--FLDLFSGSGAIGIEALSRGA 64

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
           D  + +E    +V   R N+    +    +V M+    T           LK ++ H+YR
Sbjct: 65  DLAVMIENNPQAVACIRENLGTTRLEERAVV-MACDVLTG----------LKRLEGHNYR 113

Query: 292 FKTIFVDPP-RSGLDDATVGMVQAYPHI 318
           F  +F+DPP   G ++  +G +   P +
Sbjct: 114 FDLVFMDPPYHHGYEEQVLGYLAHSPMV 141


>gi|283778024|ref|YP_003368779.1| methyltransferase small [Pirellula staleyi DSM 6068]
 gi|283436477|gb|ADB14919.1| methyltransferase small [Pirellula staleyi DSM 6068]
          Length = 434

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 24/121 (19%)

Query: 203 LAATKGIQG-DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
           LA  K   G  +L+++C  G F++  +RH     VL V+ +K +V  A+ N   N + NV
Sbjct: 238 LAVAKYFAGRKVLDMFCYTGGFAMNASRHGQAAEVLGVDTSKRAVAQAQKNAEINGLTNV 297

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVGMVQA 314
                              F  L+       +F  I +DPP     RS +D A    +QA
Sbjct: 298 TFEAGDG------------FQSLEKFATEGRKFDAIVLDPPKFARSRSQVDQA----IQA 341

Query: 315 Y 315
           Y
Sbjct: 342 Y 342


>gi|297722731|ref|NP_001173729.1| Os04g0105000 [Oryza sativa Japonica Group]
 gi|255675113|dbj|BAH92457.1| Os04g0105000 [Oryza sativa Japonica Group]
          Length = 404

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 296 FVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSL 328
            VDPPR GL    +  ++ +P I   +YISCNPDSL
Sbjct: 298 IVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPDSL 333


>gi|149175244|ref|ZP_01853866.1| putative methyltransferase [Planctomyces maris DSM 8797]
 gi|148845853|gb|EDL60194.1| putative methyltransferase [Planctomyces maris DSM 8797]
          Length = 260

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G LL+L CG G  ++ LA  F+ VLAV+     + AA+         N++    S+++F+
Sbjct: 38  GRLLDLGCGTGELAIRLASRFEEVLAVDPDAEMLAAAQQKAREQQATNIQWRNQSAEQFS 97


>gi|289193240|ref|YP_003459181.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
 gi|288939690|gb|ADC70445.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
          Length = 277

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 54/110 (49%), Gaps = 10/110 (9%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-D 212
           R  K KI  D+++  ++L++    +I R         N G     +E +    +G     
Sbjct: 22  RKGKPKITYDKEFF-KKLSIDSSNIIKRN--------NYGYGKKAVEILKENLEGFSNFT 72

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +LE+  G G  ++ LA+   +V+A+E ++ ++   + N+  N + NV+I+
Sbjct: 73  VLEIGTGAGTLTIPLAKEVKKVIAIEKSEMNIRLLKENLRENGIENVEII 122


>gi|138893776|ref|YP_001124229.1| 16S rRNA m(2)G 1207 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196251113|ref|ZP_03149792.1| methyltransferase small [Geobacillus sp. G11MC16]
 gi|134265289|gb|ABO65484.1| 16S rRNA m(2)G 1207 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209354|gb|EDY04134.1| methyltransferase small [Geobacillus sp. G11MC16]
          Length = 200

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 20/98 (20%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + GDLL++ CG G   L LA+ F   RV  +++ + ++E A  N  AN ++N  I +  S
Sbjct: 58  VAGDLLDVGCGYGPIGLALAKSFPDRRVQMIDVNERALELAEENKQANGIHNAIIYK--S 115

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSG 303
             F++               +   RF  +  +PP R+G
Sbjct: 116 DLFSE---------------VGEQRFAAVITNPPIRAG 138


>gi|304311157|ref|YP_003810755.1| Non-ribosomal peptide synthetase modules and related proteins [gamma
            proteobacterium HdN1]
 gi|301796890|emb|CBL45103.1| Non-ribosomal peptide synthetase modules and related proteins [gamma
            proteobacterium HdN1]
          Length = 5494

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query: 77   MPGSLLINALMIEMMATIRLE--PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
            +P + L+    IE+M +  L+  PL RA+LF++       ++A+ TLI H ++ D W   
Sbjct: 2736 LPETELMRLAAIELMTSFELDRGPLFRARLFRV-----AENEAVFTLIIHHIVTDGW-SM 2789

Query: 135  AIRLRDALHARKYQIQLIG 153
             I +RD L     QI  +G
Sbjct: 2790 GILIRD-LATAYVQIHALG 2807


>gi|229067866|ref|ZP_04201183.1| hypothetical protein bcere0025_900 [Bacillus cereus F65185]
 gi|229176701|ref|ZP_04304105.1| hypothetical protein bcere0005_880 [Bacillus cereus 172560W]
 gi|228606744|gb|EEK64161.1| hypothetical protein bcere0005_880 [Bacillus cereus 172560W]
 gi|228715225|gb|EEL67084.1| hypothetical protein bcere0025_900 [Bacillus cereus F65185]
          Length = 213

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 72  IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131

Query: 267 KE 268
            E
Sbjct: 132 YE 133


>gi|322514825|ref|ZP_08067844.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
 gi|322119207|gb|EFX91348.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
          Length = 59

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 318 ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           I+Y+ CNP +L RD   ++   + +++ A+ D FP+T H+E   L  +
Sbjct: 12  IVYVFCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESISLFTK 59


>gi|108803688|ref|YP_643625.1| SAM-dependent methyltransferase [Rubrobacter xylanophilus DSM 9941]
 gi|108764931|gb|ABG03813.1| SAM-dependent methyltransferase [Rubrobacter xylanophilus DSM 9941]
          Length = 391

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 12/98 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LAA +  +G +L+++   G F+L  AR    V AV+ +  ++E AR N   N + N+  V
Sbjct: 211 LAAGRHARGRVLDVFSYGGGFALHAARRAASVEAVDSSAAALEQARENARLNGLGNLSFV 270

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++            F+ L+        + T+ +DPP
Sbjct: 271 EANA------------FDLLRARSDAGEAYDTVILDPP 296


>gi|256421554|ref|YP_003122207.1| methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
 gi|256036462|gb|ACU60006.1| Methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
          Length = 280

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           D+L+L CG+G  +L  AR   RVL V+IA+  V A    I    + N++I+
Sbjct: 48  DVLDLGCGDGTTALPSARLGARVLGVDIARNLVAAGNKRIEEEGLTNIRIL 98


>gi|228937403|ref|ZP_04100049.1| hypothetical protein bthur0008_880 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970289|ref|ZP_04130948.1| hypothetical protein bthur0003_870 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976859|ref|ZP_04137271.1| hypothetical protein bthur0002_870 [Bacillus thuringiensis Bt407]
 gi|228782829|gb|EEM30995.1| hypothetical protein bthur0002_870 [Bacillus thuringiensis Bt407]
 gi|228789398|gb|EEM37318.1| hypothetical protein bthur0003_870 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822236|gb|EEM68218.1| hypothetical protein bthur0008_880 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 213

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 72  IKGDILDVGCGYGPIGLSLAKEFQGCEVHMVDVNERALGLAKENAANNRIENIRIFQSSV 131

Query: 267 KE 268
            E
Sbjct: 132 YE 133


>gi|268325126|emb|CBH38714.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
          Length = 272

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 37/60 (61%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L+   G   ++LE+  G+G  ++ LA+   +V+A+E ++ +V+  + NI  + V NV+I+
Sbjct: 56  LSEILGENFEVLEIGAGSGTLTIPLAKKIKKVVAIESSEMAVDYLKRNIKESRVENVEII 115


>gi|124022602|ref|YP_001016909.1| SAM-binding motif-containing protein [Prochlorococcus marinus str.
           MIT 9303]
 gi|123962888|gb|ABM77644.1| SAM (and some other nucleotide) binding motif [Prochlorococcus
           marinus str. MIT 9303]
          Length = 255

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           +  +  S+ Q        +  W+ +     Q    ++ CG+G  SL LARHFDRV A ++
Sbjct: 12  FDSVAASYAQQRPHYPESLFAWISSKASSHQ-RCWDVACGSGQASLGLARHFDRVDATDL 70

Query: 240 AKPSVEAA------RYNIAA 253
           +   V AA       Y +AA
Sbjct: 71  SPAQVAAAPAHSNIHYQVAA 90


>gi|253999017|ref|YP_003051080.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp.
           SIP3-4]
 gi|253985696|gb|ACT50553.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp.
           SIP3-4]
          Length = 348

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +LEL CG G+ +L +A+HF   R+ AV  +K   E          + N++++     EF
Sbjct: 123 SILELGCGWGSLTLWMAKHFPSSRITAVSNSKSQREYIMSEALKRGLPNIQVITCDMNEF 182

Query: 270 TQAMRREREFNRLKDIDI--HSYRFKTIF 296
              M    +F+R+  +++  H   + T+F
Sbjct: 183 NPGM----QFDRIVSVEMFEHMRNYDTMF 207


>gi|75763956|ref|ZP_00743584.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488558|gb|EAO52146.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 213

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 72  IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131

Query: 267 KE 268
            E
Sbjct: 132 YE 133


>gi|229188386|ref|ZP_04315434.1| hypothetical protein bcere0002_880 [Bacillus cereus ATCC 10876]
 gi|228595060|gb|EEK52831.1| hypothetical protein bcere0002_880 [Bacillus cereus ATCC 10876]
          Length = 213

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 72  IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131

Query: 267 KE 268
            E
Sbjct: 132 YE 133


>gi|206972250|ref|ZP_03233197.1| ybxB protein [Bacillus cereus AH1134]
 gi|228950649|ref|ZP_04112783.1| hypothetical protein bthur0006_890 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229077398|ref|ZP_04210055.1| hypothetical protein bcere0023_1120 [Bacillus cereus Rock4-2]
 gi|206732824|gb|EDZ49999.1| ybxB protein [Bacillus cereus AH1134]
 gi|228705911|gb|EEL58240.1| hypothetical protein bcere0023_1120 [Bacillus cereus Rock4-2]
 gi|228809000|gb|EEM55485.1| hypothetical protein bthur0006_890 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 199

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116


>gi|21220225|ref|NP_626004.1| hypothetical protein SCO1731 [Streptomyces coelicolor A3(2)]
 gi|256788661|ref|ZP_05527092.1| hypothetical protein SlivT_29592 [Streptomyces lividans TK24]
 gi|289772556|ref|ZP_06531934.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|5531441|emb|CAB50946.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289702755|gb|EFD70184.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 205

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           GD+L+L CG G+ SL+ A    RV  V+++   VE AR  +A 
Sbjct: 52  GDVLDLGCGTGSLSLLAAEQGHRVTGVDLSPAMVELARTKLAG 94


>gi|326937895|gb|AEA13791.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 199

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQGCEVHMVDVNERALGLAKENAANNRIENIRIFQSS 116


>gi|229015503|ref|ZP_04172501.1| hypothetical protein bcere0030_990 [Bacillus cereus AH1273]
 gi|229021712|ref|ZP_04178294.1| hypothetical protein bcere0029_910 [Bacillus cereus AH1272]
 gi|228739580|gb|EEL89994.1| hypothetical protein bcere0029_910 [Bacillus cereus AH1272]
 gi|228745790|gb|EEL95794.1| hypothetical protein bcere0030_990 [Bacillus cereus AH1273]
          Length = 213

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S
Sbjct: 72  IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNRIENIRIFQSS 130


>gi|315579656|gb|EFU91847.1| conserved domain protein [Enterococcus faecalis TX0630]
          Length = 47

 Score = 38.9 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +YISCN  +L RDL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 1   MYISCNVSTLARDLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 47


>gi|224543595|ref|ZP_03684134.1| hypothetical protein CATMIT_02804 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523467|gb|EEF92572.1| hypothetical protein CATMIT_02804 [Catenibacterium mitsuokai DSM
           15897]
          Length = 397

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 18/156 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           D+L + CG+G   L L    ++V+A++  K S+  A          N K + + +K F  
Sbjct: 258 DVLSMGCGSGIMELQLE---NKVVAIDDNKVSIHDA--------TENAKRLELDNKLFIA 306

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329
               ++  + LK+   HSY    + ++    G+ D  +  +      H++ +S N  +L 
Sbjct: 307 GHVNDQAAHHLKN---HSY--DALIINETVDGMTDDLLKSITLSGIKHVIIVSDNMSTLA 361

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + L  L     +  +   D+ P+T  +E  V L RK
Sbjct: 362 KTLHQLEEMFDVNTIISLDKEPHTPRLEIIVDLKRK 397


>gi|228898854|ref|ZP_04063136.1| hypothetical protein bthur0014_880 [Bacillus thuringiensis IBL
           4222]
 gi|228860754|gb|EEN05132.1| hypothetical protein bthur0014_880 [Bacillus thuringiensis IBL
           4222]
          Length = 199

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S
Sbjct: 58  IKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116


>gi|283782504|ref|YP_003373259.1| cyclopropane-fatty-acyl-phospholipid synthase [Pirellula staleyi
           DSM 6068]
 gi|283440957|gb|ADB19399.1| Cyclopropane-fatty-acyl-phospholipid synthase [Pirellula staleyi
           DSM 6068]
          Length = 345

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +LEL CG G+ SL +A HF   ++ AV  ++P  E          + N++I+    ++F+
Sbjct: 122 ILELGCGWGSLSLWMAEHFPTSQITAVSNSRPQREYIEAQARERGLTNLRIITADMRDFS 181

Query: 271 QAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQAYPH 317
            A     +F+R+  +++  + R   I ++  RS + D     V  + H
Sbjct: 182 IA----EKFDRVVSVEMLEHMRNYAIVLERIRSWMHDDAKLFVHIFTH 225


>gi|156972629|ref|YP_001443536.1| N6-adenine-specific methylase [Vibrio harveyi ATCC BAA-1116]
 gi|156524223|gb|ABU69309.1| hypothetical protein VIBHAR_00281 [Vibrio harveyi ATCC BAA-1116]
          Length = 199

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           Q   L+L+ G+G      A R  D+V  +E+   + +  + ++A+ + NN+++V   +  
Sbjct: 60  QAKCLDLFAGSGGLGFESASRQADQVTMIELNPQAFQQLQKSVASLNANNIQVVNTDAIS 119

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
           F Q                       +F+DPP R GL D TV +++
Sbjct: 120 FLQQ---------------PGTPHHVVFIDPPFRKGLLDETVTLLE 150


>gi|238761635|ref|ZP_04622610.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia kristensenii
           ATCC 33638]
 gi|238700149|gb|EEP92891.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia kristensenii
           ATCC 33638]
          Length = 56

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           ++YISC+  +L R+  +L +  + + ++ + D FP+T H+E   LL+++P 
Sbjct: 3   VVYISCHSTTLARNNQVLLAAGYRLAQVRMLDMFPHTGHLESMALLMQEPG 53


>gi|145344558|ref|XP_001416797.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577023|gb|ABO95090.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 441

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 16/93 (17%)

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDA-------TVGMVQAYPHILYISCNPDSLCRDLSIL 335
           KD D+       + VDPPR GLD           G+      +LY+SC  +S  RD   L
Sbjct: 355 KDCDV-------LIVDPPRKGLDAKLRAVLTDVDGLSDDLQTLLYVSCGFESFMRDSDEL 407

Query: 336 --STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             S    I     F  FP T H+E   +  R P
Sbjct: 408 LASGVWQIRHHESFVFFPGTNHIEIFAVFSRTP 440


>gi|15605998|ref|NP_213375.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
 gi|2983178|gb|AAC06779.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
          Length = 380

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 210 QGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +GD +L+L+C +G FS+  A    +V+ V+I K +VE AR N   N V     V  ++ +
Sbjct: 210 EGDRVLDLFCYSGGFSVYCANRGAKVVGVDINKRAVELARENAKLNSV-KADFVLGNAFD 268

Query: 269 FTQAMRRE 276
           F Q  + E
Sbjct: 269 FIQESKEE 276


>gi|317132483|ref|YP_004091797.1| methyltransferase small [Ethanoligenens harbinense YUAN-3]
 gi|315470462|gb|ADU27066.1| methyltransferase small [Ethanoligenens harbinense YUAN-3]
          Length = 398

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 18/107 (16%)

Query: 210 QGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            G +L+ +C  G F+L  AR+  D V AV+I+  ++E  R N A N + N+     +   
Sbjct: 225 SGAVLDCFCHTGGFALHAARYGADTVEAVDISSAALEMVRRNAALNGLANITTTEANV-- 282

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVG 310
                     F+ LK       ++  + +DPP     +S L  A  G
Sbjct: 283 ----------FDLLKAYQQEGRQYDLVILDPPAFAKSKSALQSAARG 319


>gi|254423085|ref|ZP_05036803.1| Nodulation protein S [Synechococcus sp. PCC 7335]
 gi|196190574|gb|EDX85538.1| Nodulation protein S [Synechococcus sp. PCC 7335]
          Length = 229

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 51/89 (57%), Gaps = 7/89 (7%)

Query: 200 EWVLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+ +  +  ++G  LE+ CG GNF++++A+H   +LA+++ +      R  + A+    
Sbjct: 20  QWIFSQLQPHVKGRTLEVGCGCGNFTMLIAQHCSELLAIDLDEGYTRQTRSRLQAH---- 75

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDI 287
              V++++ + T AM  ++ F+ +  +D+
Sbjct: 76  -PHVQVAAADVT-AMAPDQSFDTIIMLDV 102


>gi|297582440|ref|YP_003698220.1| methyltransferase small [Bacillus selenitireducens MLS10]
 gi|297140897|gb|ADH97654.1| methyltransferase small [Bacillus selenitireducens MLS10]
          Length = 201

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 210 QGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
           +GDLL++ CG G   + LA   D  R+  +++ + SVE AR N  AN V +NV I +  +
Sbjct: 59  EGDLLDIGCGWGPIGIALAMSTDQRRINMIDVNERSVELARLNAEANGVADNVHIEQRDA 118

Query: 267 KE 268
            E
Sbjct: 119 TE 120


>gi|328772089|gb|EGF82128.1| hypothetical protein BATDEDRAFT_23450 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 623

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++ YC +G F L+LA  F+ V+A+E      + A  N A N +NN  +   S +E+   
Sbjct: 424 LVDAYCRSGVFGLLLAPLFEHVVAIEAHTSLSKCAFSNAADNQINNYTLHNGSVEEWFST 483

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYI 321
           +  +              +   +F   P  GL  DA   ++Q  P ++ +
Sbjct: 484 LSNQPNL-----------QVSMVFCHSPVQGLSVDALDRLLQFGPRMIVL 522


>gi|148265427|ref|YP_001232133.1| methyltransferase type 11 [Geobacter uraniireducens Rf4]
 gi|146398927|gb|ABQ27560.1| Methyltransferase type 11 [Geobacter uraniireducens Rf4]
          Length = 226

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++LE+ CG G  +  LA+H +RV+A +    ++E AR  I A++V 
Sbjct: 23  EVLEIGCGKGRITQDLAKHAERVVATDPDAAALETARATIVADNVT 68


>gi|229159274|ref|ZP_04287298.1| hypothetical protein bcere0009_870 [Bacillus cereus R309803]
 gi|228624166|gb|EEK80968.1| hypothetical protein bcere0009_870 [Bacillus cereus R309803]
          Length = 158

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 21/100 (21%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 17  IKGDILDVGCGYGPIGLSLAKEFQGCNVHMVDVNERALGLAKENAANNRIENIRIFQSSV 76

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
            E                      ++  I  +PP R+G D
Sbjct: 77  YENVDG------------------KYAAILSNPPIRAGKD 98


>gi|307595644|ref|YP_003901961.1| methyltransferase [Vulcanisaeta distributa DSM 14429]
 gi|307550845|gb|ADN50910.1| methyltransferase small [Vulcanisaeta distributa DSM 14429]
          Length = 198

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 24/99 (24%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D+L++ CG G   +V A+     RV+ V+I K +V+ A  NI  N V+N ++        
Sbjct: 59  DILDMGCGYGVLGIVAAKLAPRGRVVMVDINKLAVKLAAINIKINRVSNAEV-------- 110

Query: 270 TQAMRREREFNRLKDI--DIHSYRFKTIFVDPP-RSGLD 305
                      RL D+   +   +F TI  +PP  +GLD
Sbjct: 111 -----------RLSDLYNAVQGEKFNTIISNPPITAGLD 138


>gi|229918535|ref|YP_002887181.1| methyltransferase [Exiguobacterium sp. AT1b]
 gi|229469964|gb|ACQ71736.1| methyltransferase [Exiguobacterium sp. AT1b]
          Length = 187

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
           G  L+LY G+G   +  L+R  D  + V+    +V+  + N+ A H     K+ R  +K 
Sbjct: 43  GKALDLYAGSGGLGIEALSRGCDEAIFVDRQPKAVQTIQENLRATHYEVKGKVYRQDAKA 102

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             + ++ ++E            +FK IF+DPP
Sbjct: 103 VLEQLKVQQE------------QFKLIFMDPP 122


>gi|332665334|ref|YP_004448122.1| oxidoreductase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334148|gb|AEE51249.1| oxidoreductase [Haliscomenobacter hydrossis DSM 1100]
          Length = 296

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 29/147 (19%)

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ V+  KP V  AR N+ A+ ++N   +R + ++  + +R+E +  R         +++
Sbjct: 153 VVHVDSVKPVVSWARQNMEASQLDN---IRWTVEDALKFVRKEAKRGR---------KYQ 200

Query: 294 TIFVDPPRSG---------LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHT---I 341
            I +DPP  G         LD     +++    IL    +P+     L++ S   +    
Sbjct: 201 AIILDPPAYGRGPEGEKWLLDKHLPELLEHCGQIL----DPEHHLLILNLYSMGFSALIA 256

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSG 368
           E LA    FP+ ++MECG L +   +G
Sbjct: 257 ENLAR-QYFPFAKNMECGELFIPDQAG 282


>gi|239940188|ref|ZP_04692125.1| hypothetical protein SrosN15_04265 [Streptomyces roseosporus NRRL
           15998]
          Length = 505

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            G +GD+L+L CG G+ SL+ A    RV AV+ +    E AR  +A  
Sbjct: 47  PGTRGDVLDLGCGTGSLSLLAAGQGHRVTAVDRSPRMAEKARAKLAGT 94


>gi|302868446|ref|YP_003837083.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302571305|gb|ADL47507.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 250

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LL++ CG G      AR FDRV  +E++   VEAAR NI    V++
Sbjct: 51  LLDVACGTGAHLRAFARLFDRVEGLELSPAMVEAARTNIPGAVVHH 96


>gi|311977791|ref|YP_003986911.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus]
 gi|82000201|sp|Q5UQK1|YR407_MIMIV RecName: Full=Putative RNA methyltransferase R407
 gi|55417026|gb|AAV50676.1| tRNA (uracil-5-)-methyltransferase [Acanthamoeba polyphaga
           mimivirus]
 gi|308204810|gb|ADO18611.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus]
          Length = 356

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 295 IFVDPPRSGLDDATVGMVQAYPHIL----YISCNPDSLCRDLSILSTTHTIERLALFDQF 350
           + V P R+GL +  +  ++    I+    Y+SC   SL RDL  +   H IE+    D F
Sbjct: 284 LIVSPGRNGLKNNVIQAIKQSRSIIKEFYYVSCYSKSLIRDLKNIENCH-IEKAQAIDLF 342

Query: 351 PYTRHMECGVLLV 363
           P T   E  V +V
Sbjct: 343 PSTEFCETIVKIV 355


>gi|33863408|ref|NP_894968.1| SAM-binding motif-containing protein [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640857|emb|CAE21312.1| SAM (and some other nucleotide) binding motif [Prochlorococcus
           marinus str. MIT 9313]
          Length = 255

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           +  +  S+ Q        +  W+ +     Q    ++ CG+G  SL LARHFDRV A ++
Sbjct: 12  FDSVAESYAQQRPYYPESLFTWISSKAASHQ-RCWDVACGSGQASLGLARHFDRVDASDL 70

Query: 240 AKPSVEAA------RYNIAA 253
           +   V AA       Y +AA
Sbjct: 71  SPAQVAAAPAHSNIHYQVAA 90


>gi|293391857|ref|ZP_06636191.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952391|gb|EFE02510.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 53

 Score = 38.1 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           ILY SCN +++ +DL  L T +  +++ LFD  P+T H E  VLL
Sbjct: 6   ILYSSCNAETMGKDLQSL-THYQSKKIQLFDMIPHTAHYEVLVLL 49


>gi|134100186|ref|YP_001105847.1| hypothetical protein SACE_3648 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006595|ref|ZP_06564568.1| hypothetical protein SeryN2_18911 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912809|emb|CAM02922.1| hypothetical protein SACE_3648 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 221

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N H   W+L          L++ CG+G+ + +LAR  D VLAV+     VE AR    ++
Sbjct: 19  NAHYHAWILRQLPARFSRALDVGCGSGDLARLLARRADEVLAVDQDPSIVEHARS--LSS 76

Query: 255 HVNNVKIV 262
           H  N+ +V
Sbjct: 77  HRTNIDVV 84


>gi|255578870|ref|XP_002530289.1| RNA m5u methyltransferase, putative [Ricinus communis]
 gi|223530187|gb|EEF32096.1| RNA m5u methyltransferase, putative [Ricinus communis]
          Length = 863

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)

Query: 283 KDIDIHSYRFKTI--FVDPPRSGLDDATVGMVQAYPH---ILYISCNPDSL 328
           KD      +FK +   VDPPR+GL    +  ++ + H   ++YISCNP++L
Sbjct: 741 KDGTYSVPQFKNVVAIVDPPRNGLHPTVIKALRTHSHLRRLVYISCNPETL 791


>gi|331701219|ref|YP_004398178.1| protein-(glutamine-N5) methyltransferase [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128562|gb|AEB73115.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lactobacillus buchneri NRRL B-30929]
          Length = 282

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANH 255
           +++W+LA     +  +L++  G+G  ++ L  AR   +V A +I+ P+++ AR N  ANH
Sbjct: 105 LVDWILADNSDSKLKVLDIGTGSGAIAIALKHARPHWQVFASDISLPAIKVARQNAIANH 164


>gi|306828583|ref|ZP_07461777.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
 gi|304429191|gb|EFM32277.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
          Length = 68

 Score = 37.7 bits (86), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++Y+SCN  +L RDL  L   + ++ +   D FP+T   E  V LV+K
Sbjct: 12  MVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 59


>gi|84496605|ref|ZP_00995459.1| methylase involved in ubiquinone/menaquinonebiosynthesis-like
           protein [Janibacter sp. HTCC2649]
 gi|84383373|gb|EAP99254.1| methylase involved in ubiquinone/menaquinonebiosynthesis-like
           protein [Janibacter sp. HTCC2649]
          Length = 245

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            G  L+  CG G  +  LA HFDRV  V+IA   +E AR
Sbjct: 63  HGRALDFGCGAGRLTRALAAHFDRVDGVDIAASMIELAR 101


>gi|331265452|ref|YP_004325082.1| putative RNA methyltransferase [Streptococcus oralis Uo5]
 gi|326682124|emb|CBY99740.1| putative RNA methyltransferase [Streptococcus oralis Uo5]
          Length = 51

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++Y+SCN  +L RDL  L   + ++ +   D FP+T   E  V LV+K
Sbjct: 1   MVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 48


>gi|293364529|ref|ZP_06611254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
 gi|307702819|ref|ZP_07639769.1| hypothetical protein SMSK23_0772 [Streptococcus oralis ATCC 35037]
 gi|291317037|gb|EFE57465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
 gi|307623675|gb|EFO02662.1| hypothetical protein SMSK23_0772 [Streptococcus oralis ATCC 35037]
          Length = 62

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++Y+SCN  +L RDL  L   + ++ +   D FP+T   E  V LV+K
Sbjct: 12  MVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 59


>gi|320335602|ref|YP_004172313.1| SAM-dependent methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319756891|gb|ADV68648.1| SAM-dependent methyltransferase [Deinococcus maricopensis DSM
           21211]
          Length = 391

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +G  L+++  +G+F L LA     V  ++ +  ++  A  N+  N   NV         +
Sbjct: 218 RGAALDVFSYHGSFGLHLAPGAAHVELIDASGAALARAEENMRLNGHTNVT--------Y 269

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           T+A      F+RL+D++    RF TI +DPP
Sbjct: 270 TEA----NAFDRLRDLESAGQRFDTISLDPP 296


>gi|167823860|ref|ZP_02455331.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 9]
          Length = 342

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V+ +E +     
Sbjct: 256 FTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTA 315

Query: 246 AARYNIAANHVNN 258
            A  N   N V+ 
Sbjct: 316 RALENAKENGVDG 328


>gi|291612617|ref|YP_003522774.1| hypothetical protein Slit_0145 [Sideroxydans lithotrophicus ES-1]
 gi|291582729|gb|ADE10387.1| protein of unknown function Met10 [Sideroxydans lithotrophicus
           ES-1]
          Length = 447

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVK 260
            L  T     D+L  +C  G FSL   R   + VL+++ ++ +++ A+ N+  N ++  K
Sbjct: 263 ALTGTLAAGRDVLNCFCYTGGFSLYALRGGAKSVLSIDSSQEALQLAQTNVQLNALDAAK 322

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
                +  F  A+R+ R+ NR         +F  I +DPP+
Sbjct: 323 AEWQCADVF-DALRKLRDQNR---------KFDLIVLDPPK 353


>gi|55981249|ref|YP_144546.1| hypothetical protein TTHA1280 [Thermus thermophilus HB8]
 gi|82408293|pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
           Putative Sam-Dependent Rna Methyltransferase, In Complex
           With S-Adenosyl-L-Homocysteine
 gi|82408294|pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
           Putative Sam-Dependent Rna Methyltransferase, In Complex
           With S-Adenosyl-L-Homocysteine
 gi|55772662|dbj|BAD71103.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 382

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 14/125 (11%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+++   G F+L LA  F  V+AV+ +  ++  A  N   N + NV+++  ++       
Sbjct: 214 LDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA------- 266

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS 333
                F+ L+ ++    RF  + +DPP          + +AY     ++     L ++  
Sbjct: 267 -----FDLLRRLEKEGERFDLVVLDPP--AFAKGKKDVERAYRAYKEVNLRAIKLLKEGG 319

Query: 334 ILSTT 338
           IL+T 
Sbjct: 320 ILATA 324


>gi|297559246|ref|YP_003678220.1| methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843694|gb|ADH65714.1| Methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 257

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           G +L+  CG G  S  LA HF  V+ V+I+ P +E AR
Sbjct: 76  GRVLDFGCGAGRLSNALAAHFPEVVGVDISAPMLEEAR 113


>gi|187734788|ref|YP_001876900.1| tRNA (guanine-N(7)-)-methyltransferase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187424840|gb|ACD04119.1| tRNA (guanine-N(7)-)-methyltransferase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 198

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 202 VLAATK--GIQGDL-LELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           VLA +   G  G   ++L CG+G F L +A H+   R L +E     V       A   +
Sbjct: 14  VLAPSDIFGADGPFEVDLGCGDGGFLLQMAAHYPERRFLGIERLLGRVRGVCSRAAVRGL 73

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRL 282
           +NVK+ R+ S+ F + M +    +RL
Sbjct: 74  DNVKVFRVESRYFLEWMMQPGCISRL 99


>gi|46199218|ref|YP_004885.1| hypothetical protein TTC0914 [Thermus thermophilus HB27]
 gi|46196843|gb|AAS81258.1| conserved hypothetical protein [Thermus thermophilus HB27]
          Length = 382

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 14/125 (11%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+++   G F+L LA  F  V+AV+ +  ++  A  N   N + NV+++  ++       
Sbjct: 214 LDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA------- 266

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS 333
                F+ L+ ++    RF  + +DPP          + +AY     ++     L ++  
Sbjct: 267 -----FDLLRRLEKEGERFDLVVLDPP--AFAKGKKDVERAYRAYKEVNLRAIKLLKEGG 319

Query: 334 ILSTT 338
           IL+T 
Sbjct: 320 ILATA 324


>gi|75910914|ref|YP_325210.1| hypothetical protein Ava_4718 [Anabaena variabilis ATCC 29413]
 gi|75704639|gb|ABA24315.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 244

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE-AARYNIAAN 254
           L++  CGNG  +  L++ F RV+ ++++K ++E AA+ N AAN
Sbjct: 59  LIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAAN 101


>gi|315648197|ref|ZP_07901298.1| methyltransferase [Paenibacillus vortex V453]
 gi|315276843|gb|EFU40186.1| methyltransferase [Paenibacillus vortex V453]
          Length = 205

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G  L+L+ G G   +  L+R  DR + +++   S+   +        +N+K  R+  +  
Sbjct: 47  GTALDLFAGTGGLGIEALSRGIDRAVFIDVEPKSISTIK--------DNLKAARLEER-- 96

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              + R      LK ++  S++F  +F+DPP
Sbjct: 97  -AEIYRNDAARALKALEKRSFKFDLVFLDPP 126


>gi|256376931|ref|YP_003100591.1| methyltransferase type 12 [Actinosynnema mirum DSM 43827]
 gi|255921234|gb|ACU36745.1| Methyltransferase type 12 [Actinosynnema mirum DSM 43827]
          Length = 232

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 26/48 (54%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           WV  A     G  L+  CG+G     LA H+D VL V+++ P VE AR
Sbjct: 36  WVTDAGVRPGGRALDAGCGSGRRCRELADHYDEVLGVDLSAPLVELAR 83


>gi|73535497|pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535498|pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535499|pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535500|pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535501|pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535502|pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535503|pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535504|pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
          Length = 382

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 14/125 (11%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+++   G F+L LA  F  V+AV+ +  ++  A  N   N + NV+++  ++       
Sbjct: 214 LDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA------- 266

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS 333
                F+ L+ ++    RF  + +DPP          + +AY     ++     L ++  
Sbjct: 267 -----FDLLRRLEKEGERFDLVVLDPP--AFAKGKKDVERAYRAYKEVNLRAIKLLKEGG 319

Query: 334 ILSTT 338
           IL+T 
Sbjct: 320 ILATA 324


>gi|226192738|pdb|3GGD|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
           (Yp_325210.1) From Anabaena Variabilis Atcc 29413 At
           2.11 A Resolution
          Length = 245

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 1/43 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE-AARYNIAAN 254
           L++  CGNG  +  L++ F RV+ ++++K ++E AA+ N AAN
Sbjct: 60  LIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAAN 102


>gi|313201123|ref|YP_004039781.1| cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp.
           MP688]
 gi|312440439|gb|ADQ84545.1| Cyclopropane-fatty-acyl-phospholipid synthase [Methylovorus sp.
           MP688]
          Length = 348

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +LEL CG G+ +L +A+H+   R+ AV  +K   E          + N++++     EF 
Sbjct: 124 ILELGCGWGSLTLWMAKHYPSSRITAVSNSKSQREYIMSEALKRGLPNIQVITCDMNEFN 183

Query: 271 QAMRREREFNRLKDIDI--HSYRFKTIF 296
             M    +F+R+  +++  H   + T+F
Sbjct: 184 PGM----QFDRIVSVEMFEHMRNYDTMF 207


>gi|167948631|ref|ZP_02535705.1| 23S rRNA 5-methyluridine methyltransferase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 65

 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLA--LFDQFPYTRHME 357
           I+Y+SC P +L RD  IL   H    ++  + D FP+T H+E
Sbjct: 16  IVYVSCYPGTLARDAGILCHQHGYRLVSAGVMDMFPHTAHVE 57


>gi|270636082|ref|ZP_06222089.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Haemophilus
           influenzae HK1212]
 gi|270317401|gb|EFA28916.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Haemophilus
           influenzae HK1212]
          Length = 164

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     V+
Sbjct: 94  FIQVNRALNERMVNTALDWLELNQQDCVLDLFCGMGNFTLPLAKRVKNAVGIEGVFEMVQ 153

Query: 246 AARYNIAANHV 256
            A  N   N +
Sbjct: 154 KAAQNAERNQI 164


>gi|116791377|gb|ABK25958.1| unknown [Picea sitchensis]
          Length = 263

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            GNG  S+ +A H+DRV+A +I+K  +E AR +    +V    +  M+ +E T 
Sbjct: 42  AGNGQASVSIAEHYDRVIATDISKQQLELARKHPKVTYVLTPPV--MTDEELTS 93


>gi|254473997|ref|ZP_05087390.1| methyltransferase type 11 [Pseudovibrio sp. JE062]
 gi|211956886|gb|EEA92093.1| methyltransferase type 11 [Pseudovibrio sp. JE062]
          Length = 252

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           +++ CG G FS ++ARHF +VLA +++   +E A
Sbjct: 44  VDVGCGTGQFSALIARHFQQVLATDVSASQIENA 77


>gi|268316279|ref|YP_003289998.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
 gi|262333813|gb|ACY47610.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
          Length = 246

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 35/57 (61%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           ++L++ CG G  + VLAR   RV  +++A+ +++ AR    A  +++V+ +R   +E
Sbjct: 43  EILDVGCGRGRHARVLARRGYRVTGIDVAERALQIARERAEAEGLHHVRFLRHDMRE 99


>gi|302547282|ref|ZP_07299624.1| putative methyltransferase protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302464900|gb|EFL27993.1| putative methyltransferase protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 251

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG--IQG 211
           R ++     +R+ +D+   +A +   YR     + +P A      L  +LAA  G  + G
Sbjct: 20  RCSRPGGPEERNPMDDDALLAEQLAYYRAGAAQYDRPYA--EREELRELLAAVDGLPVAG 77

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           D+LEL CG G ++  LA     V AV+ A   ++ AR   A+
Sbjct: 78  DVLELACGTGQWTPRLAARARSVTAVDAAAEVLDLARARTAS 119


>gi|66547731|ref|XP_393324.2| PREDICTED: hemK methyltransferase family member 1-like isoform 1
           [Apis mellifera]
          Length = 349

 Score = 37.4 bits (85), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEA 246
           +P   I VH +   L ++   + ++LE+ CG+G  SL +A     V  +A++    + E 
Sbjct: 140 RPETEILVHYILKALKSSDNNKQEILEIGCGSGAISLAIAHANKTVHCIAIDSNPEACEL 199

Query: 247 ARYN-IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            + N    N  + + +V  + K+           N  K++D++S  F  I  +PP
Sbjct: 200 TKKNRDKLNLKDRISVVHATLKDNGSIEISNESKNESKNLDLNSKIFDFIVSNPP 254


>gi|325957208|ref|YP_004292620.1| type I restriction enzyme EcoKI subunit R [Lactobacillus
           acidophilus 30SC]
 gi|325333773|gb|ADZ07681.1| type I restriction enzyme EcoKI subunit R [Lactobacillus
           acidophilus 30SC]
          Length = 492

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 12/126 (9%)

Query: 145 RKYQIQL-IGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN--SFTQPNAGINVHMLEW 201
           R+++I +   + +K      R  +D++L  AG  +   ++ N  + TQP  G N+ + EW
Sbjct: 175 RRHEINIQFAKKHKLTEAETRQLIDQQLRSAGWEVDTERLNNWKNQTQPQRGHNMAIAEW 234

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA------ARYNIAANH 255
           VL      Q     L+ G   + +V A+ +D  +A ++A+P   A      + Y++ +N 
Sbjct: 235 VLP---NDQRADYALFKGLDFYGIVEAKKWDEDIAGQMAQPKEYAKEVPYQSNYHLLSNQ 291

Query: 256 VNNVKI 261
           + + K+
Sbjct: 292 MGDYKV 297


>gi|298245425|ref|ZP_06969231.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297552906|gb|EFH86771.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 258

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 199 LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           L+W++ A + + G   ++++  G G+ +L LA H   V+A++   P +EA R      H+
Sbjct: 32  LQWLVEAAR-LDGSEVVVDVATGTGHTALALAPHAREVVAIDFTAPMLEAGRKLAQERHI 90

Query: 257 NNVKIV 262
            NV+ +
Sbjct: 91  ANVRFI 96


>gi|322421516|ref|YP_004200739.1| polysaccharide deacetylase [Geobacter sp. M18]
 gi|320127903|gb|ADW15463.1| polysaccharide deacetylase [Geobacter sp. M18]
          Length = 496

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++E+  G G F+L +AR+   VLAV+I+   +E  R    +  ++N++IV+ + +E   A
Sbjct: 316 VMEIGAGTGIFTLDIARNCGEVLAVDISGNMLELLRKKAQSAGIDNIRIVKGNVEEMEPA 375


>gi|226323271|ref|ZP_03798789.1| hypothetical protein COPCOM_01043 [Coprococcus comes ATCC 27758]
 gi|225208461|gb|EEG90815.1| hypothetical protein COPCOM_01043 [Coprococcus comes ATCC 27758]
          Length = 310

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +++ YCG G   L+ + H   V+ VE+ K +V+ A  N   N + NV+
Sbjct: 244 SVIDAYCGIGTIGLIASGHAKEVVGVELNKDAVKDAILNAKENQIRNVR 292


>gi|302549463|ref|ZP_07301805.1| methyltransferase type 12 [Streptomyces viridochromogenes DSM
           40736]
 gi|302467081|gb|EFL30174.1| methyltransferase type 12 [Streptomyces viridochromogenes DSM
           40736]
          Length = 218

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           N H   W+L    G  G  L++ CG+G+ + +LA   +RV  V+ A P++ A
Sbjct: 24  NAHFHRWILRQLPGRVGSALDVGCGSGDLARLLAHRAERVHGVD-ADPAITA 74


>gi|261408047|ref|YP_003244288.1| methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261284510|gb|ACX66481.1| methyltransferase [Paenibacillus sp. Y412MC10]
          Length = 201

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 19/111 (17%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G  L+L+ G G   +  L+R  DR + V++   S+   +        +N+K  R+   E 
Sbjct: 43  GIALDLFAGTGGLGIEALSRGMDRAVFVDVEPKSISTIK--------DNLKAARL---EE 91

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSG----LDDATVGMVQ 313
           +  + R      LK ++   Y F  +F+DPP   ++G    LD A  G++Q
Sbjct: 92  SAEVYRNDAARALKALEKRGYGFDLVFLDPPYRFKNGDELMLDMAERGLLQ 142


>gi|229148510|ref|ZP_04276766.1| hypothetical protein bcere0011_880 [Bacillus cereus m1550]
 gi|228634926|gb|EEK91499.1| hypothetical protein bcere0011_880 [Bacillus cereus m1550]
          Length = 213

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 72  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131

Query: 267 KE 268
            E
Sbjct: 132 YE 133


>gi|229125618|ref|ZP_04254650.1| hypothetical protein bcere0015_880 [Bacillus cereus BDRD-Cer4]
 gi|228657810|gb|EEL13616.1| hypothetical protein bcere0015_880 [Bacillus cereus BDRD-Cer4]
          Length = 213

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 72  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIKNIRIFQSSV 131

Query: 267 KE 268
            E
Sbjct: 132 YE 133


>gi|156741118|ref|YP_001431247.1| methyltransferase small [Roseiflexus castenholzii DSM 13941]
 gi|156232446|gb|ABU57229.1| methyltransferase small [Roseiflexus castenholzii DSM 13941]
          Length = 198

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L CG G   +VLAR F   RV+ V+    +V  AR+N A N   NV+++     E+
Sbjct: 58  ILDLGCGCGVIGIVLARWFPQARVILVDRDLLAVRYARHNAALNQTPNVEVIGSVGFEY 116


>gi|228919051|ref|ZP_04082430.1| hypothetical protein bthur0011_870 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229041006|ref|ZP_04189769.1| hypothetical protein bcere0027_870 [Bacillus cereus AH676]
 gi|228727303|gb|EEL78497.1| hypothetical protein bcere0027_870 [Bacillus cereus AH676]
 gi|228840576|gb|EEM85838.1| hypothetical protein bthur0011_870 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 213

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 72  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131

Query: 267 KE 268
            E
Sbjct: 132 YE 133


>gi|258648575|ref|ZP_05736044.1| ribosomal protein L11 methyltransferase [Prevotella tannerae ATCC
           51259]
 gi|260851353|gb|EEX71222.1| ribosomal protein L11 methyltransferase [Prevotella tannerae ATCC
           51259]
          Length = 285

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 213 LLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +L++ CG G  +++ A +  D  +A++I +  V  A  N+A NH+NN++++
Sbjct: 151 VLDMGCGTGLLAILAAMKGADNCMAIDIDEWCVNNAMENLALNHINNIEVL 201


>gi|153006689|ref|YP_001381014.1| hypothetical protein Anae109_3851 [Anaeromyxobacter sp. Fw109-5]
 gi|152030262|gb|ABS28030.1| protein of unknown function Met10 [Anaeromyxobacter sp. Fw109-5]
          Length = 388

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 42/207 (20%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            T    G  +   E  L A +  +G  L+ +   G F+L LA   + V AVE+   +   
Sbjct: 193 LTGQKTGAFLDQRENHLRAGEYARGRCLDCFAYAGGFALQLATRAEHVTAVEMQPTAAAL 252

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLD 305
            R N+  N   NV++V  ++            F+ L+D       F  + +DPP  +   
Sbjct: 253 LRENVTLNLAANVEVVEANA------------FDYLRDRAEEEPAFDLVVLDPPAFAKSK 300

Query: 306 DATVGMVQAYPHI--------------LYISCN---PDSLCRDLSILSTTHTIERLALFD 348
           DA     + Y  +              +  SC+    +++  +L + +      R+ L +
Sbjct: 301 DALAAARRGYKEVNLRALQVLRPGGILVTASCSYHMAEAMLEELVLDAANDAGRRVQLLE 360

Query: 349 Q------------FPYTRHMECGVLLV 363
           +             P TR+++C VL V
Sbjct: 361 RRGAGRDHPVLLGVPETRYLKCFVLRV 387


>gi|17545416|ref|NP_518818.1| protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           GMI1000]
 gi|17427708|emb|CAD14227.1| probable protein-l-isoaspartate o-methyltransferase [Ralstonia
           solanacearum GMI1000]
          Length = 216

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           D+LE+  G+G  + +LA     V  V+IA   V  AR N+A N V NV +V+
Sbjct: 80  DVLEVGAGSGYMAALLAHRGRHVTTVDIAPELVAFARDNLARNGVTNVDVVQ 131


>gi|331236129|ref|XP_003330724.1| 3-demethylubiquinone-9 3-methyltransferase [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309309714|gb|EFP86305.1| 3-demethylubiquinone-9 3-methyltransferase [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 347

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 32/46 (69%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +L++ CG G FS VLAR   +VLA++ A+ S++AAR +  ++ + N
Sbjct: 137 VLDVGCGGGIFSEVLARLGAQVLAIDAAEDSIKAARLHAQSDPLLN 182


>gi|228956542|ref|ZP_04118338.1| hypothetical protein bthur0005_880 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228803107|gb|EEM49929.1| hypothetical protein bthur0005_880 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 213

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 72  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131

Query: 267 KE 268
            E
Sbjct: 132 YE 133


>gi|228905898|ref|ZP_04069795.1| hypothetical protein bthur0013_890 [Bacillus thuringiensis IBL 200]
 gi|228853713|gb|EEM98473.1| hypothetical protein bthur0013_890 [Bacillus thuringiensis IBL 200]
          Length = 213

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 72  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 131

Query: 267 KE 268
            E
Sbjct: 132 YE 133


>gi|218231310|ref|YP_002364950.1| ybxB protein [Bacillus cereus B4264]
 gi|218159267|gb|ACK59259.1| ybxB protein [Bacillus cereus B4264]
          Length = 199

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S
Sbjct: 58  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116


>gi|71907367|ref|YP_284954.1| hypothetical protein Daro_1737 [Dechloromonas aromatica RCB]
 gi|71846988|gb|AAZ46484.1| hypothetical protein Daro_1737 [Dechloromonas aromatica RCB]
          Length = 233

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           EW+ A   G +  +LE+ CG G  +  LAR    VL+++  +P +EA R  +AA+ V 
Sbjct: 27  EWMAALVPGKR--VLEIGCGVGFATQALARRGLAVLSIDSLEPCLEATRLRVAASDVT 82


>gi|30018371|ref|NP_830002.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus ATCC 14579]
 gi|29893911|gb|AAP07203.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus ATCC 14579]
          Length = 199

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S
Sbjct: 58  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIKNIRIFQSS 116


>gi|229107787|ref|ZP_04237423.1| hypothetical protein bcere0018_880 [Bacillus cereus Rock1-15]
 gi|228675636|gb|EEL30844.1| hypothetical protein bcere0018_880 [Bacillus cereus Rock1-15]
          Length = 199

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S
Sbjct: 58  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116


>gi|222150949|ref|YP_002560102.1| hypothetical protein MCCL_0699 [Macrococcus caseolyticus JCSC5402]
 gi|222120071|dbj|BAH17406.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 388

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 14/91 (15%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEF 269
           D+L L+  +G FS+ +  +  +   V+IAK S+E  + N A N +N  +   + M +   
Sbjct: 216 DMLNLFAYSGGFSVAVGSNGYKTTNVDIAKRSIELMQQNFALNEMNLDDQTFITMDA--- 272

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                    F+ L     H   F  I +DPP
Sbjct: 273 ---------FDALAYFTRHLKTFDIIVIDPP 294


>gi|229142907|ref|ZP_04271348.1| hypothetical protein bcere0012_880 [Bacillus cereus BDRD-ST24]
 gi|296500935|ref|YP_003662635.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           BMB171]
 gi|228640528|gb|EEK96917.1| hypothetical protein bcere0012_880 [Bacillus cereus BDRD-ST24]
 gi|296321987|gb|ADH04915.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           BMB171]
          Length = 199

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S
Sbjct: 58  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116


>gi|148269368|ref|YP_001243828.1| methyltransferase GidB [Thermotoga petrophila RKU-1]
 gi|166224627|sp|A5IJ79|RSMG_THEP1 RecName: Full=Ribosomal RNA small subunit methyltransferase G;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase; Short=16S rRNA m7G methyltransferase
 gi|147734912|gb|ABQ46252.1| methyltransferase GidB [Thermotoga petrophila RKU-1]
          Length = 228

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y++E L V      +R +       ++ ++ +++E +L   + ++G LL++  GNG   L
Sbjct: 26  YIEELLGVPYNLTAHRDL-------DSAVHKNVVEILLPLKEELKGTLLDVGSGNGVPGL 78

Query: 226 VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           +LA  F   +V+ ++  + SV   R  I    + NV +V+  ++ F++  R E
Sbjct: 79  ILAIFFSKLKVVLLDSREKSVNFLRGVIEKLDLENVSVVKERAENFSKERREE 131


>gi|15643470|ref|NP_228516.1| glucose-inhibited division protein B [Thermotoga maritima MSB8]
 gi|7387702|sp|Q9WZG6|RSMG_THEMA RecName: Full=Ribosomal RNA small subunit methyltransferase G;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase; Short=16S rRNA m7G methyltransferase
 gi|4981231|gb|AAD35789.1|AE001742_4 glucose-inhibited division protein B [Thermotoga maritima MSB8]
          Length = 238

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y++E L V      +R +       ++ ++ +++E +L   + ++G LL++  GNG   L
Sbjct: 36  YIEELLGVPYNLTAHRDL-------DSAVHKNVVEILLPLKEELKGTLLDVGSGNGVPGL 88

Query: 226 VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           +LA  F   +V+ ++  + SV   R  I    + NV +V+  ++ F++  R E
Sbjct: 89  ILAIFFSKLKVVLLDSREKSVNFLRGVIEKLDLENVSVVKERAENFSKERREE 141


>gi|218895236|ref|YP_002443647.1| ybxB protein [Bacillus cereus G9842]
 gi|218542476|gb|ACK94870.1| ybxB protein [Bacillus cereus G9842]
          Length = 199

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S
Sbjct: 58  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSS 116


>gi|228963201|ref|ZP_04124370.1| hypothetical protein bthur0004_920 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796459|gb|EEM43898.1| hypothetical protein bthur0004_920 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 199

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I + S 
Sbjct: 58  IKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIFQSSV 117

Query: 267 KE 268
            E
Sbjct: 118 YE 119


>gi|108762676|ref|YP_630223.1| hypothetical protein MXAN_1988 [Myxococcus xanthus DK 1622]
 gi|108466556|gb|ABF91741.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 398

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 32/182 (17%)

Query: 178 LIYRQIENSF-----TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
             Y + EN F          G  +  ++  L A +  +GD L+L+  +G F+L L+R   
Sbjct: 189 FTYHEGENRFEVDLQGDMKTGAFLDQVDNHLRAGELARGDALDLFSYHGGFALSLSRTCT 248

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            VLAVE  + +   A+ N  AN   NV +   ++            F+ L+  D    RF
Sbjct: 249 SVLAVEQDEKAAARAKANAEANGRANVTVENANA------------FDVLRRFDTSGRRF 296

Query: 293 KTIFVDPP-----RSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHTIERL 344
            T+ +DPP     R GL  A    ++AY  +    +    PD L   L   S +  ++R 
Sbjct: 297 DTVVLDPPGLAKRREGLATA----LRAYHELNLRAFRCLKPDGL---LVTCSCSGKLDRA 349

Query: 345 AL 346
           A 
Sbjct: 350 AF 351


>gi|52078600|ref|YP_077391.1| hypothetical protein BL02799 [Bacillus licheniformis ATCC 14580]
 gi|52783962|ref|YP_089791.1| YbxB [Bacillus licheniformis ATCC 14580]
 gi|52001811|gb|AAU21753.1| hypothetical protein with SAM binding motif [Bacillus licheniformis
           ATCC 14580]
 gi|52346464|gb|AAU39098.1| YbxB [Bacillus licheniformis ATCC 14580]
          Length = 201

 Score = 36.6 bits (83), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 210 QGDLLELYCGNGNFSLVLARHF-DRVL-AVEIAKPSVEAARYNIAANHVNNVKI 261
           +GD L++ CG G   L LA  F DR++  +++ + +VE ++ N   N ++N+KI
Sbjct: 59  EGDFLDVGCGYGPIGLSLAADFEDRMVHMIDVNERAVELSKENALNNQIDNIKI 112


>gi|319649125|ref|ZP_08003333.1| YbxB protein [Bacillus sp. BT1B_CT2]
 gi|317388825|gb|EFV69644.1| YbxB protein [Bacillus sp. BT1B_CT2]
          Length = 184

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 210 QGDLLELYCGNGNFSLVLARHF-DRVL-AVEIAKPSVEAARYNIAANHVNNVKI 261
           +GD L++ CG G   L LA  F DR++  +++ + +VE ++ N   N ++N+KI
Sbjct: 42  EGDFLDVGCGYGPIGLSLAADFEDRMVHMIDVNERAVELSKENALNNQIDNIKI 95


>gi|221484867|gb|EEE23157.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 540

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 186 SFTQPNAGI----NVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIA 240
           S    NAG+    N    E   AAT+ +Q  +L++ CGNG F L +L R F  +  V+ +
Sbjct: 169 SAASGNAGVELAANSETEEGTDAATRHLQIPILDVGCGNGIFLLRLLRRGFTALAGVDYS 228

Query: 241 KPSVEAARYNIA 252
             +++ AR N++
Sbjct: 229 AAAIQLARQNVS 240


>gi|237835895|ref|XP_002367245.1| hypothetical protein TGME49_049010 [Toxoplasma gondii ME49]
 gi|211964909|gb|EEB00105.1| hypothetical protein TGME49_049010 [Toxoplasma gondii ME49]
 gi|221506079|gb|EEE31714.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 540

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 186 SFTQPNAGI----NVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIA 240
           S    NAG+    N    E   AAT+ +Q  +L++ CGNG F L +L R F  +  V+ +
Sbjct: 169 SAASGNAGVELAANSETEEGTDAATRHLQIPILDVGCGNGIFLLRLLRRGFTALAGVDYS 228

Query: 241 KPSVEAARYNIA 252
             +++ AR N++
Sbjct: 229 AAAIQLARQNVS 240


>gi|295692966|ref|YP_003601576.1| type i restriction-modification system, r subunit [Lactobacillus
           crispatus ST1]
 gi|295031072|emb|CBL50551.1| Type I restriction-modification system, R subunit [Lactobacillus
           crispatus ST1]
          Length = 1072

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 11/106 (10%)

Query: 164 RDYVDERLTVAGRTLIYRQIEN--SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           R  +D++L  AG  +  +++ N    T+P  G N+ + EWVL    G + D   L+ G  
Sbjct: 195 RQLIDQQLRDAGWEVDSQKLNNWTQKTEPQKGHNMAIAEWVLP--NGQRADYA-LFKGLK 251

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEA------ARYNIAANHVNNVKI 261
            + +V A+ +D+ +A ++A+P   +      + Y + +N + + K+
Sbjct: 252 FYGIVEAKKWDQDIAGQMAQPKEYSKEVPFRSDYRLVSNEMGDYKV 297


>gi|269102842|ref|ZP_06155539.1| methyltransferase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162740|gb|EEZ41236.1| methyltransferase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 269

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 34/61 (55%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L ++ CG G+ +L +A  FD V AV+ +   +E  ++     HV+N+ ++  + ++  Q 
Sbjct: 63  LFDMGCGTGSIALSVADWFDDVYAVDYSPKMLEICQHRADTQHVDNIHLINKAWEDSWQE 122

Query: 273 M 273
           +
Sbjct: 123 I 123


>gi|218260249|ref|ZP_03475621.1| hypothetical protein PRABACTJOHN_01283 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224662|gb|EEC97312.1| hypothetical protein PRABACTJOHN_01283 [Parabacteroides johnsonii
           DSM 18315]
          Length = 420

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 207 KGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           K  QGD +L++ CGNGN+S  LA     VLA + ++  VE AR
Sbjct: 232 KATQGDYILDIACGNGNYSGYLAEQGIDVLAFDYSQRMVELAR 274


>gi|332184656|gb|AEE26910.1| modification methylase, HemK family [Francisella cf. novicida 3523]
          Length = 284

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +L+L  G G   L LA      +++AV++ + S++ A+ N  AN++ NVK ++ S
Sbjct: 119 ILDLGTGTGAIGLALAAELVNSQIVAVDLYQQSLDVAKNNAQANNITNVKFIQSS 173


>gi|281411935|ref|YP_003346014.1| methyltransferase GidB [Thermotoga naphthophila RKU-10]
 gi|281373038|gb|ADA66600.1| methyltransferase GidB [Thermotoga naphthophila RKU-10]
          Length = 228

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y++E L V      +R +       ++ ++ +++E +L   + ++G LL++  GNG   L
Sbjct: 26  YIEELLGVPYNLTAHRDL-------DSAVHKNVVEILLPLKEELKGTLLDVGSGNGVPGL 78

Query: 226 VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           +LA  F   +V+ ++  + SV   R  I    + NV +V+  ++ F++  R E
Sbjct: 79  ILAIFFSKLKVVLLDSREKSVNFLRGVIEKLDLENVSVVKERAENFSRERREE 131


>gi|189347631|ref|YP_001944160.1| Mg-protoporphyrin IX methyl transferase [Chlorobium limicola DSM
           245]
 gi|189341778|gb|ACD91181.1| magnesium protoporphyrin O-methyltransferase [Chlorobium limicola
           DSM 245]
          Length = 232

 Score = 36.6 bits (83), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y D++L+          + N+  Q +A +      W+          +L+  CG G FS+
Sbjct: 31  YGDDKLST---------VRNTVRQGHAVMMDKAFSWLQQLNLPKGATILDAGCGTGLFSI 81

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            LA+   +V AV+IA   VE A+ +     VNN
Sbjct: 82  RLAKEGYKVKAVDIASQMVEKAKADATMQGVNN 114


>gi|311739580|ref|ZP_07713415.1| SAM-dependent methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305396|gb|EFQ81464.1| SAM-dependent methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 407

 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 23/147 (15%)

Query: 215 ELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +LY G G F  VLA     +V++V+ +  +    +  +A   V                 
Sbjct: 272 DLYGGVGLFVPVLAHAVQGKVISVDYSPAATAGEQAGLADCDV----------------- 314

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRD 331
             E +  +++ +     +   + +DPPR+G  +  +      A   ++++ C+P +  RD
Sbjct: 315 --EVKSAKVEQVAAQLPKPGAVVLDPPRTGAGEDVIRSVAAAAPQAVVHVGCDPATFARD 372

Query: 332 LSILST-THTIERLALFDQFPYTRHME 357
           L   +   + I +LAL + FP T H E
Sbjct: 373 LGYWNQHGYGIGKLALINAFPGTHHFE 399


Searching..................................................done


Results from round 2




>gi|254781000|ref|YP_003065413.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040677|gb|ACT57473.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 371

 Score =  543 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 371/371 (100%), Positives = 371/371 (100%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH
Sbjct: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT
Sbjct: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY
Sbjct: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA
Sbjct: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP
Sbjct: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV
Sbjct: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360

Query: 361 LLVRKPSGWHQ 371
           LLVRKPSGWHQ
Sbjct: 361 LLVRKPSGWHQ 371


>gi|85060132|ref|YP_455834.1| tRNA (uracil-5-)-methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|123518780|sp|Q2NQZ6|TRMA_SODGM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|84780652|dbj|BAE75429.1| tRNA (uracil-5)-methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 370

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 305/364 (83%), Positives = 325/364 (89%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL IDQYEQQLAEK  RLRQMMLAFQ P  QIFRS+P HYRMRAEF IWHD DDLYHIMF
Sbjct: 5   TLPIDQYEQQLAEKAARLRQMMLAFQAPEAQIFRSQPAHYRMRAEFRIWHDEDDLYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           D QTK R+RID+FMPGS LINALM EMM  IR EPLLRAKLFQIDYLT+QS +A+VTLIY
Sbjct: 65  DPQTKARIRIDHFMPGSPLINALMAEMMTAIRPEPLLRAKLFQIDYLTTQSGEAVVTLIY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LDDAWRECA  LRDAL AR Y IQ IGRANKTKI LDRDYVDERLTVAGRTLIY+QI
Sbjct: 125 HRPLDDAWRECAAGLRDALRARGYHIQFIGRANKTKIYLDRDYVDERLTVAGRTLIYQQI 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNAGINVHMLEW LAAT+G QGDLLELYCGNGNFSL LARHFDRVLA EIAK S
Sbjct: 185 ENSFTQPNAGINVHMLEWALAATEGAQGDLLELYCGNGNFSLALARHFDRVLATEIAKLS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VEAA YNIAANH++NV+IVRMS++EFTQAMR+EREF RLK+ID+ SYR +TIFVDPPRSG
Sbjct: 245 VEAAHYNIAANHIDNVQIVRMSAEEFTQAMRKEREFTRLKEIDLQSYRCETIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD+ATV MVQAYP ILYISCNPDSLCR+LS LSTTHTIERLALFDQFPYT HMECGVLLV
Sbjct: 305 LDEATVSMVQAYPQILYISCNPDSLCRNLSTLSTTHTIERLALFDQFPYTHHMECGVLLV 364

Query: 364 RKPS 367
           RK +
Sbjct: 365 RKAT 368


>gi|227113201|ref|ZP_03826857.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 367

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY+ QLAEK +RLR MM  F  P   +FRS   HYRMRAEF IWHDGD+LYHIMFD
Sbjct: 6   LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH
Sbjct: 66  QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W+E A  LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM+  R+FNRLK ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLKGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++L  +L  LS TH I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLER 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|290513037|ref|ZP_06552400.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. 1_1_55]
 gi|289774419|gb|EFD82424.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. 1_1_55]
          Length = 366

 Score =  467 bits (1203), Expect = e-130,   Method: Composition-based stats.
 Identities = 246/361 (68%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFATPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDDAWRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG  GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|50123159|ref|YP_052326.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
 gi|115305868|sp|Q6CZB4|TRMA_ERWCT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|49613685|emb|CAG77136.1| tRNA (uracil-5)-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 367

 Score =  467 bits (1203), Expect = e-130,   Method: Composition-based stats.
 Identities = 242/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ Y+ QLAEK +RLR MM  F  P   +FRS   HYRMRAEF IWHDGD+LYHIMFD
Sbjct: 6   LPIEDYDDQLAEKTERLRGMMAPFNAPEPAVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM EM+A I+ +P+LR KLFQIDYL++ S + IV+L+YH
Sbjct: 66  QQTKQRIRVDRFPAASELINRLMPEMLAAIQPDPVLRRKLFQIDYLSTLSGEVIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L++ W+E A  LRD+L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RALNEEWQEHARALRDSLTAQGFNLQLIGRATKTKICLDRDYVDECLPVAGRNMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L AT G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIQMLEWALDATAGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM+  R+FNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++L  +L  LS TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLKTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|227329571|ref|ZP_03833595.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 367

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 242/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY+ QLAEK +RLR MM  F  P   +FRS   HYRMRAEF IWH+GD+LYHIMFD
Sbjct: 6   LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHEGDELYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH
Sbjct: 66  QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W+E A  LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM+  R+FNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++L  +L  LS TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|307128964|ref|YP_003880980.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii 3937]
 gi|306526493|gb|ADM96423.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii 3937]
          Length = 367

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 241/361 (66%), Positives = 291/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QL EK  RL  MM  F  P   +FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPIDQYDAQLEEKTGRLGAMMAPFDAPAPTVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM  +++ +R EP+LR KLFQIDYL++ S + +V+L+YH
Sbjct: 66  QQTKQRIRVDRFPAASELINRLMPALISALRAEPVLRRKLFQIDYLSTLSGEIVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W++CA  LRD LHA+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 KALDDEWQQCARLLRDQLHAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L+AT+G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAMMNIQMLEWALSATQGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN ++NV+I+RM+++EFTQAM   R+FNRL+ ID+  YR +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLAGYRCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  LS TH I +LALFDQFPYT HMECGVLL +
Sbjct: 306 DDDTVKLVQAYPRILYISCNPETLCANLETLSQTHRISQLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|253686597|ref|YP_003015787.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259547828|sp|C6DHQ1|TRMA_PECCP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|251753175|gb|ACT11251.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 367

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 242/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY+ QLAEK +RLR MM  F  P   +FRS   HYRMRAEF IWH+GD+LYHIMFD
Sbjct: 6   LPIEQYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHEGDELYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM E++A I+ + +LR KLFQIDYL++ S + IV+L+YH
Sbjct: 66  QQTKQRIRVDRFPAASELINRLMPELLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W+E A  LRD+L A+ +++QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RALDEEWQEHARALRDSLTAQGFRLQLIGRATKTKICLDRDYVDECLPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAINIQMLEWALDATAGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM+  R+FNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMQGVRQFNRLQGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++L  +L  LS TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSHNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|288937811|ref|YP_003441870.1| tRNA (uracil-5-)-methyltransferase [Klebsiella variicola At-22]
 gi|288892520|gb|ADC60838.1| tRNA (uracil-5-)-methyltransferase [Klebsiella variicola At-22]
          Length = 366

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 246/361 (68%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPELRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDDAWRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG  GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|311281561|ref|YP_003943792.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae SCF1]
 gi|308750756|gb|ADO50508.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae SCF1]
          Length = 367

 Score =  466 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 240/361 (66%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WH+GDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMTPFAAPVPEVFRSPVSHYRMRAEFRLWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q TK+R+R+D F   S LIN LM  ++A ++ EP+LR KLFQ+DYLT+ S+QAIV+L+YH
Sbjct: 66  QATKQRIRVDSFPAASQLINVLMKAVIAGVKDEPVLRHKLFQVDYLTTMSNQAIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L D W+  A RLRDAL A    +QLIGRA KTKI LDRDY+DERL V GR +IYRQ+E
Sbjct: 126 KALGDEWQSAATRLRDALRAANLNVQLIGRATKTKIALDRDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW    T G  GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWAQDVTTGATGDLLELYCGNGNFSLALARNFTRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIAANH++NV+I+RMS++EFTQAM   R+FNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAANHIDNVQIIRMSAEEFTQAMNGVRQFNRLQGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL R
Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHRVERLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|238892362|ref|YP_002917096.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330001331|ref|ZP_08303948.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. MS 92-3]
 gi|238544678|dbj|BAH61029.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328537722|gb|EGF63927.1| tRNA (uracil-5-)-methyltransferase [Klebsiella sp. MS 92-3]
          Length = 366

 Score =  465 bits (1196), Expect = e-129,   Method: Composition-based stats.
 Identities = 246/361 (68%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDDAWRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG  GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   R+FNRL+ ID+HSY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|156935907|ref|YP_001439823.1| tRNA (uracil-5-)-methyltransferase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534161|gb|ABU78987.1| hypothetical protein ESA_03801 [Cronobacter sakazakii ATCC BAA-894]
          Length = 367

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 248/361 (68%), Positives = 293/361 (81%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QLAEK +RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 7   LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 66

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+T+ R+R+D F   S LINALM  M+A IR    LR KLFQIDYLT++S QA+V+L+YH
Sbjct: 67  QETRSRIRVDSFPAASELINALMPRMIAGIRDNRTLRHKLFQIDYLTTRSQQAVVSLLYH 126

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAWRE A RLRDAL A  + +  IGRA KTKI LD+DY+DERL VAG  +IYRQ+E
Sbjct: 127 RALDDAWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 186

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW L  T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 187 NSFTQPNAAMNIHMLEWALDVTQGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 246

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 247 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 306

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQAYPHILYISCNP +LC +L  LS TH +ERLALFDQFPYT HMECGVLL R
Sbjct: 307 DQETVKMVQAYPHILYISCNPQTLCENLDTLSQTHRVERLALFDQFPYTHHMECGVLLTR 366

Query: 365 K 365
           +
Sbjct: 367 R 367


>gi|171769880|sp|A7ML95|TRMA_ENTS8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 366

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 248/361 (68%), Positives = 293/361 (81%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QLAEK +RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+T+ R+R+D F   S LINALM  M+A IR    LR KLFQIDYLT++S QA+V+L+YH
Sbjct: 66  QETRSRIRVDSFPAASELINALMPRMIAGIRDNRTLRHKLFQIDYLTTRSQQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAWRE A RLRDAL A  + +  IGRA KTKI LD+DY+DERL VAG  +IYRQ+E
Sbjct: 126 RALDDAWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW L  T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIHMLEWALDVTQGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQAYPHILYISCNP +LC +L  LS TH +ERLALFDQFPYT HMECGVLL R
Sbjct: 306 DQETVKMVQAYPHILYISCNPQTLCENLDTLSQTHRVERLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|260595992|ref|YP_003208563.1| tRNA (uracil-5-)-methyltransferase [Cronobacter turicensis z3032]
 gi|260215169|emb|CBA26983.1| tRNA (uracil-5-)-methyltransferase [Cronobacter turicensis z3032]
          Length = 367

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QLAEK +RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPIDQYDAQLAEKTERLQSMMAPFAAPAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+T+ R+R+D F   S LINALM  M+  IR    LR KLFQIDYLT++S QA+V+L+YH
Sbjct: 66  QETRSRIRVDSFPAASELINALMPRMIEGIRGNRTLRHKLFQIDYLTTRSQQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L D WRE A RLRDAL A  + +  IGRA KTKI LD+DY+DERL VAG  +IYRQ+E
Sbjct: 126 RALGDDWREEATRLRDALRADGFDVHFIGRATKTKIMLDQDYIDERLPVAGTEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW L AT G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIHMLEWALDATLGSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ +D+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGVDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQAYP ILYISCNP +LC +L  LS TH +ERLALFDQFPYT HMECGVLL R
Sbjct: 306 DQETVKMVQAYPRILYISCNPQTLCENLETLSQTHRVERLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|261343029|ref|ZP_05970887.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
 gi|288314783|gb|EFC53721.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cancerogenus ATCC
           35316]
          Length = 366

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 247/361 (68%), Positives = 291/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R++ F   S LIN LM  MM  +R  P+LR KLFQIDYLT+QS+QAIV+L+YH
Sbjct: 66  QQTKSRIRVNSFPAASELINQLMTLMMDGVRNNPVLRHKLFQIDYLTTQSNQAIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L+D WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KALNDEWREQAEALRDALRAQNLNVHLIGRATKTKIMLDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L ATKG  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNVQMLEWALNATKGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|157373003|ref|YP_001480992.1| tRNA (uracil-5-)-methyltransferase [Serratia proteamaculans 568]
 gi|172047791|sp|A8GL74|TRMA_SERP5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157324767|gb|ABV43864.1| tRNA (uracil-5-)-methyltransferase [Serratia proteamaculans 568]
          Length = 367

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 235/362 (64%), Positives = 289/362 (79%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L I++Y+ QLAEK  RL+ +M  F  P  ++FRS   HYRMRAEF IWHD D++YHIMF
Sbjct: 5   NLPIERYDDQLAEKTARLKTLMSPFTAPEPEVFRSPVSHYRMRAEFRIWHDEDEMYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQTK+R+R+D F   S LIN LM  ++A I+ EP+LR KLFQIDYL+++S + I +L+Y
Sbjct: 65  DQQTKQRIRVDKFPAASELINRLMSALIAAIKPEPILRRKLFQIDYLSTRSGKIIASLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LDD W++ A +LRD L A+ + +QLIGRA+K KI LD+DYVDE L VAGR +IYRQ+
Sbjct: 125 HRKLDDEWQQQAEKLRDDLRAQGFDLQLIGRASKMKIMLDQDYVDEVLPVAGRDMIYRQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW L  T G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS
Sbjct: 185 ENSFTQPNAALNIQMLEWALDVTTGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA+YNIAAN ++NV+I+RM++++FTQAM   REFNRLK ID+ SY  +TIFVDPPRSG
Sbjct: 245 VAAAQYNIAANQIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSYNCETIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD TV MVQAYP ILYISCNP++LC +L  L  TH+I RLALFDQFPYT HMECGVLL 
Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLCANLETLQQTHSISRLALFDQFPYTHHMECGVLLE 364

Query: 364 RK 365
           ++
Sbjct: 365 KR 366


>gi|270265153|ref|ZP_06193415.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera 4Rx13]
 gi|270040787|gb|EFA13889.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera 4Rx13]
          Length = 367

 Score =  464 bits (1195), Expect = e-129,   Method: Composition-based stats.
 Identities = 235/362 (64%), Positives = 292/362 (80%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L I++Y+ QLAEK  RL+ +M  F  P  ++FRS+  HYRMRAEF IWHD D++YHIMF
Sbjct: 5   NLPIERYDDQLAEKTARLKTLMSPFTAPEPEVFRSQVEHYRMRAEFRIWHDEDEMYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQTK+R+R+D F   S LIN LM  ++A I+ EP+LR KLFQIDYL+++S + I +L+Y
Sbjct: 65  DQQTKQRIRVDRFPAASELINRLMSALIAAIKPEPILRHKLFQIDYLSTRSGKIIASLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LD+AW++ A +LRD+L A+ + +QLIGRA+K KI LD+DYVDE L VAGR +IYRQ+
Sbjct: 125 HRKLDEAWQQQAEKLRDSLRAQGFDLQLIGRASKMKIMLDQDYVDEVLPVAGRDMIYRQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW L  T G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS
Sbjct: 185 ENSFTQPNAAMNIQMLEWALDVTTGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA+YNIAANH++NV+I+RM++++FTQAM   REFNRLK ID+ SY  +TIFVDPPRSG
Sbjct: 245 VAAAQYNIAANHIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSYNCETIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD TV MVQAYP ILYISCNP++LC +L  L  TH + RLALFDQFPYT HMECGVLL 
Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLCANLETLQETHRVSRLALFDQFPYTHHMECGVLLE 364

Query: 364 RK 365
           ++
Sbjct: 365 KR 366


>gi|262041733|ref|ZP_06014924.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040920|gb|EEW42000.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 366

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDDAWRE A  LRD L A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDAWREQAEALRDTLRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG  GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   R+FNRL+ ID+HSY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|152972754|ref|YP_001337900.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|172052447|sp|A6TGE9|TRMA_KLEP7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|150957603|gb|ABR79633.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 366

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+++YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRQKLFQIDYLTTLSNQAVVSVLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDDAWRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDAWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG  GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   R+FNRL+ ID+HSY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLHSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|206579514|ref|YP_002241174.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae 342]
 gi|226705982|sp|B5XZ11|TRMA_KLEP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|206568572|gb|ACI10348.1| tRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae 342]
          Length = 366

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF +WHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQTMMAPFAAPVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTRSRIRVDSFPAASALINQLMTAMLEGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL V GR +IYRQ+E
Sbjct: 126 KKLDDTWREQAEALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVGGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKEATGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LCR+L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCRNLETLSQTHNVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|300721342|ref|YP_003710613.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297627830|emb|CBJ88365.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 366

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 234/365 (64%), Positives = 295/365 (80%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L  + YE QL EKV RL+ MM  F VP   +FRS   HYRMRAEF IWH+ DDLYH
Sbjct: 1   MQNALPTENYENQLMEKVHRLKGMMSPFSVPEPDVFRSPASHYRMRAEFRIWHEEDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQTK+R+RID F   + LIN++M  ++A ++  P+LR KLFQ+DYL+++S++ IV+
Sbjct: 61  IMFDQQTKQRIRIDQFPVANQLINSMMQAIIAGVKDNPVLRHKLFQVDYLSTRSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L+D WRE AI LR+ L A  + +QLIGRA+KTKI LD DY+DE L+VAG+T+IY
Sbjct: 121 LLYHKKLNDEWREQAIDLRNQLIAEGFDVQLIGRASKTKIMLDHDYIDEELSVAGKTMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA IN+HMLEW +  TK  +GDLLELYCGNGNFSL LA++F+RVLA EIA
Sbjct: 181 RQVENSFTQPNASINIHMLEWAIDITKDSKGDLLELYCGNGNFSLALAQNFERVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA++NIAAN ++NV+I+RMS++EFTQAM  EREFNRL+ ID+ SY+ +TIFVDPP
Sbjct: 241 KPSVAAAQFNIAANQIDNVQIIRMSAEEFTQAMNGEREFNRLQGIDLKSYQCETIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD+ TV MVQAYP ILYISCNP++LC++L  L+ TH + +LALFDQFPYT HMECGV
Sbjct: 301 RSGLDEKTVRMVQAYPRILYISCNPETLCQNLETLTQTHHVSKLALFDQFPYTHHMECGV 360

Query: 361 LLVRK 365
           LL ++
Sbjct: 361 LLEKR 365


>gi|331655665|ref|ZP_08356657.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M718]
 gi|331046766|gb|EGI18851.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M718]
          Length = 366

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|295095109|emb|CBK84199.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 366

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 244/359 (67%), Positives = 290/359 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+QS+QAIV+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTLMIDGVRNNPVLRNKLFQIDYLTTQSNQAIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L D WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ ++YRQ+E
Sbjct: 126 KALTDEWREQAEALRDALRAQNINVHLIGRATKTKIMLDQDYIDERLPVAGKEMVYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNVQMLEWALKATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLT 364


>gi|332998394|gb|EGK17992.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-272]
 gi|333014087|gb|EGK33444.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-227]
          Length = 366

 Score =  463 bits (1192), Expect = e-128,   Method: Composition-based stats.
 Identities = 247/361 (68%), Positives = 291/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKNRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQIE
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQIE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+F+TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|91213517|ref|YP_543503.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UTI89]
 gi|110644309|ref|YP_672039.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 536]
 gi|117626238|ref|YP_859561.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli APEC O1]
 gi|191172684|ref|ZP_03034222.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli F11]
 gi|218561040|ref|YP_002393953.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli S88]
 gi|227885284|ref|ZP_04003089.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 83972]
 gi|237703006|ref|ZP_04533487.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|300975975|ref|ZP_07173247.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|331660529|ref|ZP_08361463.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA206]
 gi|122421621|sp|Q1R3U2|TRMA_ECOUT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|123343349|sp|Q0TA91|TRMA_ECOL5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|134035058|sp|A1AIE7|TRMA_ECOK1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705972|sp|B7MIA5|TRMA_ECO45 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|91075091|gb|ABE09972.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UTI89]
 gi|110345901|gb|ABG72138.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 536]
 gi|115515362|gb|ABJ03437.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli APEC O1]
 gi|190906988|gb|EDV66589.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli F11]
 gi|218367809|emb|CAR05603.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli S88]
 gi|222035685|emb|CAP78430.1| hypothetical protein LF82_2304 [Escherichia coli LF82]
 gi|226902943|gb|EEH89202.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|227837736|gb|EEJ48202.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 83972]
 gi|294493983|gb|ADE92739.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IHE3034]
 gi|300410165|gb|EFJ93703.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 45-1]
 gi|307556117|gb|ADN48892.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ABU 83972]
 gi|307629046|gb|ADN73350.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UM146]
 gi|312948548|gb|ADR29375.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315289657|gb|EFU49050.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 110-3]
 gi|315292667|gb|EFU52019.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 153-1]
 gi|315298484|gb|EFU57739.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 16-3]
 gi|320196760|gb|EFW71382.1| tRNA uracil-5--methyltransferase [Escherichia coli WV_060327]
 gi|323949463|gb|EGB45352.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H252]
 gi|323954256|gb|EGB50041.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H263]
 gi|324012462|gb|EGB81681.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 60-1]
 gi|331052478|gb|EGI24515.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA206]
          Length = 366

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|24115259|ref|NP_709769.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 301]
 gi|30064744|ref|NP_838915.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|82546316|ref|YP_410263.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii Sb227]
 gi|50401541|sp|Q820Z9|TRMA_SHIFL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|123558094|sp|Q31U23|TRMA_SHIBS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|24054550|gb|AAN45476.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 301]
 gi|30043004|gb|AAP18726.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|81247727|gb|ABB68435.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii Sb227]
 gi|281603359|gb|ADA76343.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2002017]
 gi|313648863|gb|EFS13302.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|332751536|gb|EGJ81935.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 4343-70]
 gi|332751807|gb|EGJ82204.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-671]
 gi|332752553|gb|EGJ82939.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2747-71]
 gi|332764486|gb|EGJ94718.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2930-71]
 gi|332997951|gb|EGK17557.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri VA-6]
 gi|333014014|gb|EGK33374.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-304]
          Length = 366

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 246/361 (68%), Positives = 291/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+F+TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|301023751|ref|ZP_07187490.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 69-1]
 gi|300396895|gb|EFJ80433.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 69-1]
          Length = 366

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|323974255|gb|EGB69385.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TW10509]
          Length = 366

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|238921674|ref|YP_002935189.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella ictaluri 93-146]
 gi|259547825|sp|C5BC48|TRMA_EDWI9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|238871243|gb|ACR70954.1| tRNA (uracil-5-)-methyltransferase, putative [Edwardsiella ictaluri
           93-146]
          Length = 366

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 240/361 (66%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  + Y+ QL+EK+ RL QMM  F  P +Q FRS   HYRMRAEF IWHDGDDLYHIMFD
Sbjct: 6   LPTEHYDDQLSEKIHRLEQMMQPFGAPAVQPFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            Q+K+R+R+D F   S LIN LM  ++  +R  P LR KLFQIDYL+++S Q IV+L+YH
Sbjct: 66  PQSKQRIRVDQFPAASELINRLMPLLLDALRPNPTLRHKLFQIDYLSTRSGQIIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAW++ A  LRDAL  + + IQLIGRA+KTKICLD+D+VDE L VAGR +IYRQ+E
Sbjct: 126 RTLDDAWKQAAEALRDALRGQGFAIQLIGRASKTKICLDQDWVDEVLPVAGRQMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT+G +GDLLELYCGNGNFSL LA +F +VLA EIAKPSV
Sbjct: 186 NSFTQPNAAINIQMLEWALDATRGAEGDLLELYCGNGNFSLALAHNFRQVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN +NNV+I+RMS++EFTQAM+  R FNRL+ ID+HSY   TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQINNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYECNTIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T+GMVQ YP+ILYISCNP +LC +L  L+ +H I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DTETLGMVQGYPNILYISCNPLTLCDNLHTLNQSHRITRLALFDQFPYTHHMECGVLLER 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|296105348|ref|YP_003615494.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059807|gb|ADF64545.1| tRNA (uracil-5-)-methyltransferase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 366

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 242/359 (67%), Positives = 291/359 (81%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMTPFNAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R++ F   S LIN LM  M+  +R  P+LR KLFQIDYLT+QS+QAIV+L+YH
Sbjct: 66  QQTKSRIRVNSFPAASELINQLMTLMIDGVRNNPVLRHKLFQIDYLTTQSNQAIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L+D WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL+VAG+ ++YRQ+E
Sbjct: 126 KALNDEWREQAEALRDALRAQNINVHLIGRATKTKIMLDQDYIDERLSVAGKEMVYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNVQMLEWALKATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLEGIDLKGYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLT 364


>gi|15804563|ref|NP_290604.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7
           EDL933]
 gi|15834150|ref|NP_312923.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           Sakai]
 gi|168761641|ref|ZP_02786648.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168786833|ref|ZP_02811840.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|168799442|ref|ZP_02824449.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|217326606|ref|ZP_03442690.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|261226409|ref|ZP_05940690.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256809|ref|ZP_05949342.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285387|ref|YP_003502205.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-
           methyltransferase) [Escherichia coli O55:H7 str. CB9615]
 gi|293417475|ref|ZP_06660099.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B185]
 gi|20178144|sp|Q8X723|TRMA_ECO57 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|12518892|gb|AAG59169.1|AE005628_5 tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13364372|dbj|BAB38319.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           Sakai]
 gi|189367875|gb|EDU86291.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373235|gb|EDU91651.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC869]
 gi|189378014|gb|EDU96430.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC508]
 gi|209751938|gb|ACI74276.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli]
 gi|209751940|gb|ACI74277.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli]
 gi|209751942|gb|ACI74278.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli]
 gi|209751944|gb|ACI74279.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli]
 gi|217322827|gb|EEC31251.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           TW14588]
 gi|290765260|gb|ADD59221.1| tRNA (uracil-5-)-methyltransferase (tRNA(M-5-U54)-
           methyltransferase) [Escherichia coli O55:H7 str. CB9615]
 gi|291430995|gb|EFF03991.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B185]
 gi|320190931|gb|EFW65581.1| tRNA uracil-5--methyltransferase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320639141|gb|EFX08777.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           G5101]
 gi|320644533|gb|EFX13594.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H- str.
           493-89]
 gi|320649857|gb|EFX18372.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H- str. H
           2687]
 gi|320665949|gb|EFX32975.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326338015|gb|EGD61845.1| tRNA uracil-5-methyltransferase [Escherichia coli O157:H7 str.
           1044]
 gi|326342690|gb|EGD66463.1| tRNA uracil-5--methyltransferase [Escherichia coli O157:H7 str.
           1125]
          Length = 366

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|323964325|gb|EGB59808.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M863]
 gi|327250611|gb|EGE62319.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli STEC_7v]
          Length = 366

 Score =  462 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMITGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|281181038|dbj|BAI57368.1| tRNA (uracil-5)-methyltransferase [Escherichia coli SE15]
          Length = 366

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 243/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W + A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDEWCQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|301645162|ref|ZP_07245119.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|307140664|ref|ZP_07500020.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736]
 gi|331644703|ref|ZP_08345822.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736]
 gi|301076541|gb|EFK91347.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 146-1]
 gi|315617762|gb|EFU98367.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 3431]
 gi|331036165|gb|EGI08401.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H736]
          Length = 366

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 246/361 (68%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|331685711|ref|ZP_08386294.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H299]
 gi|331077182|gb|EGI48397.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H299]
          Length = 366

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPASHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|301048610|ref|ZP_07195623.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 185-1]
 gi|300299530|gb|EFJ55915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 185-1]
          Length = 366

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 243/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ + IFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCEAIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|146313653|ref|YP_001178727.1| tRNA (uracil-5-)-methyltransferase [Enterobacter sp. 638]
 gi|172046005|sp|A4WG46|TRMA_ENT38 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|145320529|gb|ABP62676.1| tRNA (uracil-5-)-methyltransferase [Enterobacter sp. 638]
          Length = 366

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 292/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F  P  ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMTPFAAPVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R++ F   S LIN LM  M+  +R  P LR KLFQIDYLT+QS+QAIV+++YH
Sbjct: 66  QQTKSRIRVNSFPAASELINQLMTLMIEGVRNNPQLRHKLFQIDYLTTQSNQAIVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L D WR+ A  LRDAL A+   + LIGRA KTKI LD+DYVDERL VAG+ +IYRQ+E
Sbjct: 126 KKLGDEWRKEAEVLRDALRAQNINVHLIGRATKTKIMLDQDYVDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L+AT+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNVQMLEWALSATEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIAANH++NV+I+RM+++EFTQAM  EREFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAANHIDNVQIIRMAAEEFTQAMNGEREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTL 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|317050044|ref|YP_004117692.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. At-9b]
 gi|316951661|gb|ADU71136.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. At-9b]
          Length = 367

 Score =  462 bits (1189), Expect = e-128,   Method: Composition-based stats.
 Identities = 237/361 (65%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY+ QLAEKV RL+ MM  F  P +++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPIEQYDAQLAEKVSRLQAMMAPFAAPEVEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM +M+  IR    LR KLFQIDYL++ S+Q +++L+YH
Sbjct: 66  QQTKQRIRVDQFPAASALINQLMPKMINAIRDNRALRHKLFQIDYLSTLSNQIVISLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L++ W+  A  LRDAL A  + +QLIGRA KTKICLDRDY+DERL VAG+ +IYRQ+E
Sbjct: 126 RKLEEEWQLAASALRDALRAEGFDVQLIGRATKTKICLDRDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  T+  +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQNARGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIAANH++NV+I+RM+++EFTQAM   R FNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQFNIAANHIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQAYP ILYISCNP +LC +L+ L+ TH + RLALFDQFPYT HME GVLL R
Sbjct: 306 DAETVKMVQAYPRILYISCNPQTLCDNLATLAETHEVARLALFDQFPYTHHMESGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|251787782|ref|YP_003002503.1| tRNA (uracil-5-)-methyltransferase [Dickeya zeae Ech1591]
 gi|262827675|sp|C6CG41|TRMA_DICZE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|247536403|gb|ACT05024.1| tRNA (uracil-5-)-methyltransferase [Dickeya zeae Ech1591]
          Length = 367

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 237/361 (65%), Positives = 284/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QL EK  RL  MM  F  P   +FRS   HYRMRAEF IWHDGDDLYHIMFD
Sbjct: 6   LPIDQYDAQLEEKTGRLGAMMAPFDAPAPAVFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM  ++  +R EP+LR KLFQ+DYL++ S +  V+L+YH
Sbjct: 66  QQTKQRIRVDQFPAASELINRLMPVLLNALRAEPVLRRKLFQLDYLSTLSGEIAVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  L D L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 KALDDEWRQRARELCDELRAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L+ T+G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAMMNIQMLEWALSVTQGSTGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN ++NV+I+RM+++EFTQAM   R+FNRL+ ID+  YR +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVRQFNRLQGIDLAGYRCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD T  +VQAYP ILYISCNP++LC +L  LS TH I +LALFDQFPYT HMECGVLL +
Sbjct: 306 DDGTAKLVQAYPRILYISCNPETLCANLETLSQTHRISQLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|320660831|gb|EFX28281.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 366

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRYKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|261819553|ref|YP_003257659.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium wasabiae WPP163]
 gi|261603566|gb|ACX86052.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium wasabiae WPP163]
          Length = 367

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 236/361 (65%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ Y+ QLAEK +RLR MM  F  P   +FRS   HYRMRAEF IWHDGD+LYHIMFD
Sbjct: 6   LPIEDYDDQLAEKTERLRGMMAPFNAPEPVVFRSPVSHYRMRAEFRIWHDGDELYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM +++A I+ + +LR KLFQIDYL++ S + IV+L+YH
Sbjct: 66  QQTKQRIRVDKFPAASELINRLMPKLLAAIQPDSVLRRKLFQIDYLSTLSGEVIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L++ W+E A  LRD+L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RPLNEEWQEHACALRDSLTAQGFNLQLIGRATKTKICLDRDYVDECLPVAGRNMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L AT   +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIKMLEWALDATASSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI AN + NV+I+RM+++EFTQAM+  R+F RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNITANQIENVQIIRMAAEEFTQAMQGVRQFKRLQGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++L  +L  LS TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLSNNLQTLSETHDIRRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|331665621|ref|ZP_08366519.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA143]
 gi|331057306|gb|EGI29296.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA143]
          Length = 366

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|110807824|ref|YP_691344.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 5 str. 8401]
 gi|123146465|sp|Q0SY26|TRMA_SHIF8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|110617372|gb|ABF06039.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 5 str. 8401]
          Length = 366

 Score =  462 bits (1188), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI ANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+F+TIFVDPPRSGL
Sbjct: 246 AAAQYNITANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|307314707|ref|ZP_07594304.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W]
 gi|306905762|gb|EFN36288.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W]
 gi|315063300|gb|ADT77627.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli W]
 gi|323380637|gb|ADX52905.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli KO11]
          Length = 366

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT H+ECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHIECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|188496220|ref|ZP_03003490.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 53638]
 gi|188491419|gb|EDU66522.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 53638]
          Length = 366

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|215489306|ref|YP_002331737.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312965374|ref|ZP_07779607.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 2362-75]
 gi|254789075|sp|B7UNU5|TRMA_ECO27 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|215267378|emb|CAS11829.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312290048|gb|EFR17935.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 2362-75]
          Length = 366

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|26250742|ref|NP_756782.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli CFT073]
 gi|34222850|sp|Q8CXW3|TRMA_ECOL6 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|26111173|gb|AAN83356.1|AE016770_156 tRNA (Uracil-5-)-methyltransferase [Escherichia coli CFT073]
          Length = 366

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 243/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+  +QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLRNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|331649822|ref|ZP_08350902.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M605]
 gi|330908290|gb|EGH36809.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli AA86]
 gi|331041455|gb|EGI13605.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli M605]
          Length = 366

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 243/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W + A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDDWCQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|283834733|ref|ZP_06354474.1| tRNA (uracil-5-)-methyltransferase [Citrobacter youngae ATCC 29220]
 gi|291069663|gb|EFE07772.1| tRNA (uracil-5-)-methyltransferase [Citrobacter youngae ATCC 29220]
          Length = 366

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 234/361 (64%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ +M  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSLMTPFYAQAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            QTK R+R+D F   S LIN LM  M+  +R  P+LR KLFQIDYLT+ SD+A+V+++YH
Sbjct: 66  SQTKRRIRVDSFPAASELINTLMTAMIEGVRNNPVLRHKLFQIDYLTTLSDRAVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW +  T+G +GDLLELYCGNGNFSL LA++F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWAIDVTRGSKGDLLELYCGNGNFSLALAQNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN ++NV+I+RM+++EFTQAM   REFNRL  ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMNGVREFNRLLGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP I+YISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL +
Sbjct: 306 DSETEKMVQAYPRIMYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTK 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|306813764|ref|ZP_07447940.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli NC101]
 gi|305852762|gb|EFM53209.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli NC101]
 gi|324006693|gb|EGB75912.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 57-2]
          Length = 366

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPFLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDGWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|218692255|ref|YP_002400467.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ED1a]
 gi|254789077|sp|B7MR93|TRMA_ECO81 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|218429819|emb|CAR10781.2| tRNA (uracil-5-)-methyltransferase [Escherichia coli ED1a]
          Length = 366

 Score =  461 bits (1187), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPFLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|16131803|ref|NP_418400.1| tRNA m(5)U54 methyltransferase, SAM-dependen [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89110065|ref|AP_003845.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|157155127|ref|YP_001465464.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E24377A]
 gi|157163442|ref|YP_001460760.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli HS]
 gi|170022023|ref|YP_001726977.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ATCC 8739]
 gi|170083434|ref|YP_001732754.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|191169527|ref|ZP_03031257.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B7A]
 gi|193064005|ref|ZP_03045091.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E22]
 gi|193068008|ref|ZP_03048973.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E110019]
 gi|194429393|ref|ZP_03061917.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B171]
 gi|194433193|ref|ZP_03065474.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1012]
 gi|194438266|ref|ZP_03070357.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 101-1]
 gi|209921451|ref|YP_002295535.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SE11]
 gi|218556528|ref|YP_002389442.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI1]
 gi|218697681|ref|YP_002405348.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 55989]
 gi|238903030|ref|YP_002928826.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BW2952]
 gi|253775396|ref|YP_003038227.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254039227|ref|ZP_04873277.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 1_1_43]
 gi|254163915|ref|YP_003047023.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B str. REL606]
 gi|256021670|ref|ZP_05435535.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9]
 gi|256025996|ref|ZP_05439861.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 4_1_40B]
 gi|260846774|ref|YP_003224552.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|300819387|ref|ZP_07099585.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300824362|ref|ZP_07104477.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|300902586|ref|ZP_07120562.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300926199|ref|ZP_07142005.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300928748|ref|ZP_07144264.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300954725|ref|ZP_07167159.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|301024174|ref|ZP_07187883.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|301307107|ref|ZP_07213140.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|301324909|ref|ZP_07218470.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|309797136|ref|ZP_07691533.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|312971741|ref|ZP_07785915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1827-70]
 gi|331670823|ref|ZP_08371659.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA271]
 gi|331680089|ref|ZP_08380751.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H591]
 gi|332282911|ref|ZP_08395324.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9]
 gi|136247|sp|P23003|TRMA_ECOLI RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|171855253|sp|A7ZUI5|TRMA_ECO24 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|172044453|sp|A8A773|TRMA_ECOHS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|189036039|sp|B1IVB3|TRMA_ECOLC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705975|sp|B7M721|TRMA_ECO8A RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705976|sp|B1XBX6|TRMA_ECODH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705978|sp|B6I5I3|TRMA_ECOSE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|254789076|sp|B7LA67|TRMA_ECO55 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|259547823|sp|C5A0R4|TRMA_ECOBW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262827689|sp|C5WBK5|TRMA_ECOBB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262827695|sp|C6UJK3|TRMA_ECOBR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|148051|gb|AAA24691.1| m-5-U54 transfer RNA methyltransferase [Escherichia coli]
 gi|396312|gb|AAC43071.1| tRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|1790403|gb|AAC76947.1| tRNA m(5)U54 methyltransferase, SAM-dependen [Escherichia coli str.
           K-12 substr. MG1655]
 gi|85676096|dbj|BAE77346.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|157069122|gb|ABV08377.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli HS]
 gi|157077157|gb|ABV16865.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E24377A]
 gi|169756951|gb|ACA79650.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli ATCC 8739]
 gi|169891269|gb|ACB04976.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|190900432|gb|EDV60251.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B7A]
 gi|192929470|gb|EDV83078.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E22]
 gi|192958628|gb|EDV89066.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E110019]
 gi|194412540|gb|EDX28838.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B171]
 gi|194418477|gb|EDX34565.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1012]
 gi|194422703|gb|EDX38699.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 101-1]
 gi|209914710|dbj|BAG79784.1| tRNA (uracil-5)-methyltransferase [Escherichia coli SE11]
 gi|218354413|emb|CAV01205.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 55989]
 gi|218363297|emb|CAR00946.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI1]
 gi|226838663|gb|EEH70692.1| tRNA (uracil-5-)-methyltransferase [Escherichia sp. 1_1_43]
 gi|238863708|gb|ACR65706.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BW2952]
 gi|242379501|emb|CAQ34316.1| tRNA m[5]U54 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253326440|gb|ACT31042.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975816|gb|ACT41487.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli B str. REL606]
 gi|253979973|gb|ACT45643.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli BL21(DE3)]
 gi|257761921|dbj|BAI33418.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260451199|gb|ACX41621.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli DH1]
 gi|299880533|gb|EFI88744.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 196-1]
 gi|300318306|gb|EFJ68090.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 175-1]
 gi|300405346|gb|EFJ88884.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 84-1]
 gi|300417764|gb|EFK01075.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 182-1]
 gi|300463273|gb|EFK26766.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 187-1]
 gi|300523168|gb|EFK44237.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 119-7]
 gi|300528070|gb|EFK49132.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 107-1]
 gi|300837690|gb|EFK65450.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 124-1]
 gi|300848193|gb|EFK75953.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 78-1]
 gi|308119215|gb|EFO56477.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 145-7]
 gi|309704389|emb|CBJ03738.1| tRNA (uracil-5)-methyltransferase [Escherichia coli ETEC H10407]
 gi|310334118|gb|EFQ00323.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1827-70]
 gi|315138530|dbj|BAJ45689.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli DH1]
 gi|315253601|gb|EFU33569.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 85-1]
 gi|320180305|gb|EFW55237.1| tRNA uracil-5--methyltransferase [Shigella boydii ATCC 9905]
 gi|320201540|gb|EFW76118.1| tRNA uracil-5--methyltransferase [Escherichia coli EC4100B]
 gi|323161256|gb|EFZ47169.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E128010]
 gi|323182070|gb|EFZ67480.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1357]
 gi|323934454|gb|EGB30867.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E1520]
 gi|323939046|gb|EGB35264.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E482]
 gi|323943618|gb|EGB39725.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H120]
 gi|323959266|gb|EGB54927.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H489]
 gi|323969717|gb|EGB65001.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA007]
 gi|324019674|gb|EGB88893.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 117-3]
 gi|324115514|gb|EGC09455.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli E1167]
 gi|331062078|gb|EGI34001.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli TA271]
 gi|331072415|gb|EGI43748.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli H591]
 gi|332083983|gb|EGI89192.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii 5216-82]
 gi|332085302|gb|EGI90476.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 155-74]
 gi|332105263|gb|EGJ08609.1| tRNA (uracil-5-)-methyltransferase [Shigella sp. D9]
 gi|332345962|gb|AEE59296.1| tRNA (uracil-5-)-methyltransferase TrmA [Escherichia coli UMNK88]
          Length = 366

 Score =  461 bits (1186), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|253991701|ref|YP_003043057.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783151|emb|CAQ86316.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica]
          Length = 366

 Score =  461 bits (1186), Expect = e-128,   Method: Composition-based stats.
 Identities = 232/364 (63%), Positives = 292/364 (80%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L  + YEQQL EKV RL+ MM +FQ P  ++FRS   HYRMRAEF IWH+ DDLYH
Sbjct: 1   MQNPLPTESYEQQLTEKVSRLKSMMASFQTPEPEVFRSPVSHYRMRAEFRIWHEQDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQTK+R+RI+ F   S LIN +M  ++ +IR E  LR KLFQIDYL++ S++ +V+
Sbjct: 61  IMFDQQTKQRVRINQFPVASNLINKMMEGLIDSIRSEQTLRHKLFQIDYLSTCSNKILVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L D W + A++LR+ L  + + ++LIGRA KTKI LD DY+DE L+VAGR +IY
Sbjct: 121 LLYHKKLGDEWTQQALKLRNELRNKGFDVELIGRAAKTKIMLDHDYIDEVLSVAGREMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+HMLEW +  TKG +GDLLELYCGNGNFSL LA++F++VLA EIA
Sbjct: 181 RQVENSFTQPNASVNIHMLEWAIDITKGSKGDLLELYCGNGNFSLALAQNFEKVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNI AN+++NV+I+RMS++EFTQAM  EREFNRL++ID+ SY+ +TIFVDPP
Sbjct: 241 KPSVAAAQYNITANNIDNVQIIRMSAEEFTQAMNGEREFNRLQNIDLKSYQCETIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD+ TV MVQAYP ILYISCNP++LC +L  L+ TH I RLALFDQFPYT HMECGV
Sbjct: 301 RSGLDEKTVKMVQAYPRILYISCNPETLCHNLETLTQTHKISRLALFDQFPYTHHMECGV 360

Query: 361 LLVR 364
           LL +
Sbjct: 361 LLEK 364


>gi|170681986|ref|YP_001746357.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SMS-3-5]
 gi|218707592|ref|YP_002415111.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UMN026]
 gi|293407586|ref|ZP_06651505.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1412]
 gi|298383334|ref|ZP_06992927.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1302]
 gi|300896470|ref|ZP_07114997.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 198-1]
 gi|226705977|sp|B7NFR5|TRMA_ECOLU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705979|sp|B1LNS5|TRMA_ECOSM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|170519704|gb|ACB17882.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli SMS-3-5]
 gi|218434689|emb|CAR15622.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli UMN026]
 gi|284924066|emb|CBG37165.1| tRNA (uracil-5)-methyltransferase [Escherichia coli 042]
 gi|291425503|gb|EFE98542.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1412]
 gi|298276368|gb|EFI17888.1| tRNA (Uracil54-C5-)-methyltransferase [Escherichia coli FVEC1302]
 gi|300359663|gb|EFJ75533.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 198-1]
          Length = 366

 Score =  461 bits (1186), Expect = e-128,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DGETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|300986809|ref|ZP_07177799.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 200-1]
 gi|300306386|gb|EFJ60906.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 200-1]
          Length = 366

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 243/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D     S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSSPAASELINQLMTAMIAGVRNNPILRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL +AG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPIAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|82778852|ref|YP_405201.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae Sd197]
 gi|309783924|ref|ZP_07678569.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1617]
 gi|123561308|sp|Q32AE5|TRMA_SHIDS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|81243000|gb|ABB63710.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae Sd197]
 gi|308928295|gb|EFP73757.1| tRNA (uracil-5-)-methyltransferase [Shigella dysenteriae 1617]
          Length = 366

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LA +FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALAHNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|168748726|ref|ZP_02773748.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755661|ref|ZP_02780668.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768279|ref|ZP_02793286.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775188|ref|ZP_02800195.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780894|ref|ZP_02805901.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|195937617|ref|ZP_03082999.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808578|ref|ZP_03250915.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813900|ref|ZP_03255229.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821447|ref|ZP_03261767.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397508|ref|YP_002273489.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|254795972|ref|YP_003080809.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|226705973|sp|B5Z069|TRMA_ECO5E RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|187769134|gb|EDU32978.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016809|gb|EDU54931.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001468|gb|EDU70454.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357216|gb|EDU75635.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362699|gb|EDU81118.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4486]
 gi|208728379|gb|EDZ77980.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735177|gb|EDZ83864.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741570|gb|EDZ89252.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158908|gb|ACI36341.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209751946|gb|ACI74280.1| outer membrane vitamin B12 receptor protein BtuB [Escherichia coli]
 gi|254595372|gb|ACT74733.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
          Length = 366

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMEC VLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECSVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|170769705|ref|ZP_02904158.1| tRNA (uracil-5-)-methyltransferase [Escherichia albertii TW07627]
 gi|170121513|gb|EDS90444.1| tRNA (uracil-5-)-methyltransferase [Escherichia albertii TW07627]
          Length = 366

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R++ F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVESFPAASELINQLMTAMIAGVRNNPVLRNKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH IERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKIERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|238794888|ref|ZP_04638487.1| tRNA (uracil-5-)-methyltransferase [Yersinia intermedia ATCC 29909]
 gi|238725763|gb|EEQ17318.1| tRNA (uracil-5-)-methyltransferase [Yersinia intermedia ATCC 29909]
          Length = 367

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 240/361 (66%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D Y+QQLAEK  RL+ MM  FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDSYDQQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKALELRDQLRAQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  TK   GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDTTKNASGDLLELYCGNGNFSLALARNFARVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN+++NV+I+RMS++EFTQAM   REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMLGVREFNRLKGIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQ YP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQGYPRILYISCNPETLCANLEQLQQTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|323190169|gb|EFZ75447.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli RN587/1]
          Length = 366

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LI+ LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELIDQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|300916978|ref|ZP_07133676.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 115-1]
 gi|300415730|gb|EFJ99040.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 115-1]
          Length = 366

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLA+KV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAKKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAESLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|290477206|ref|YP_003470123.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289176556|emb|CBJ83365.1| tRNA (uracil-5-)-methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 366

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 235/365 (64%), Positives = 288/365 (78%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L  + YE QL EKV RL+ MM+ F  P  ++FRS   HYRMRAEF IWH+ DDLYH
Sbjct: 1   MQNVLPTEDYENQLMEKVHRLKGMMMPFSAPEPEVFRSPASHYRMRAEFRIWHEQDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQTK+R+RID F   + LIN +M  ++A ++   LLR KLFQ+DYL++ S++ IV+
Sbjct: 61  IMFDQQTKQRIRIDQFPVANELINQMMQSIIAGVKDNSLLRHKLFQVDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L+D WRE AI LRD L A  + +QLIGRA+KTKI LD DY+DE L +AG+T+IY
Sbjct: 121 LLYHKKLNDEWREHAITLRDQLKANGFDVQLIGRASKTKIILDHDYIDEELPIAGKTMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA IN HMLEW +  TKG +GDLLELYCGNGNFSL LA++FDRVLA EIA
Sbjct: 181 RQVENSFTQPNASINTHMLEWAVGITKGAKGDLLELYCGNGNFSLALAQNFDRVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA++NI AN ++NV+I+RMS++EFTQAM  EREFNRL  ID+ SY+ +TIFVDPP
Sbjct: 241 KPSVAAAQFNIEANQIDNVQIIRMSAEEFTQAMNGEREFNRLHGIDLKSYQCETIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLDDATV MVQ Y  ILYISCNP++L ++L  L+ TH I RLALFDQFPYT HMECGV
Sbjct: 301 RSGLDDATVKMVQGYSQILYISCNPETLSQNLETLTQTHKISRLALFDQFPYTHHMECGV 360

Query: 361 LLVRK 365
           LL ++
Sbjct: 361 LLEKR 365


>gi|300937124|ref|ZP_07151982.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 21-1]
 gi|300457798|gb|EFK21291.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 21-1]
          Length = 366

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REF+RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFHRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|74314467|ref|YP_312886.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei Ss046]
 gi|187731935|ref|YP_001882659.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii CDC 3083-94]
 gi|260858083|ref|YP_003231974.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260870685|ref|YP_003237087.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|123615618|sp|Q3YV11|TRMA_SHISS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705994|sp|B2TWG0|TRMA_SHIB3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|73857944|gb|AAZ90651.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei Ss046]
 gi|187428927|gb|ACD08201.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii CDC 3083-94]
 gi|257756732|dbj|BAI28234.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257767041|dbj|BAI38536.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|320182827|gb|EFW57704.1| tRNA uracil-5--methyltransferase [Shigella flexneri CDC 796-83]
 gi|323155496|gb|EFZ41675.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli EPECa14]
 gi|323167444|gb|EFZ53152.1| tRNA (uracil-5-)-methyltransferase [Shigella sonnei 53G]
 gi|323174292|gb|EFZ59918.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli LT-68]
 gi|323177991|gb|EFZ63575.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli 1180]
 gi|332088253|gb|EGI93373.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii 3594-74]
          Length = 366

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPCILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|269140813|ref|YP_003297514.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda EIB202]
 gi|267986474|gb|ACY86303.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda EIB202]
 gi|304560573|gb|ADM43237.1| tRNA (Uracil54-C5-)-methyltransferase [Edwardsiella tarda FL6-60]
          Length = 366

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 238/361 (65%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  + Y+ QL+EK+ RL QMM  F  P +Q FRS   HYRMRAEF IWHDGDDLYHIMFD
Sbjct: 6   LPTEHYDDQLSEKIHRLEQMMQPFGAPAVQAFRSPASHYRMRAEFRIWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            Q+K+R+R+D F   S LIN LM  ++  +R  P LR KLFQIDYL+++S Q IV+L+YH
Sbjct: 66  PQSKQRIRVDRFPAASELINRLMPLLLDALRPNPTLRHKLFQIDYLSTRSGQIIVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAW++ A  LRDAL  + + IQLIGRA+KTKICLD+D+VDE L VAGR +IYRQ+E
Sbjct: 126 RALDDAWKQAAEALRDALRGQGFAIQLIGRASKTKICLDQDWVDEVLPVAGRQMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT+G  GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAINIQMLEWALDATRGAVGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI+AN ++NV+I+RMS++EFTQAM+  R FNRL+ ID+HSY   TIFVDPPRSGL
Sbjct: 246 AAAQYNISANQIDNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYECNTIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T+ MVQ Y +ILYISCNP +LC +L  L+ +H I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DTDTLSMVQGYQNILYISCNPLTLCDNLHTLTQSHRITRLALFDQFPYTHHMECGVLLER 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|271502435|ref|YP_003335461.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech586]
 gi|270345990|gb|ACZ78755.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech586]
          Length = 367

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 238/361 (65%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L IDQY+ QL EK  RL  MM  F  P   +FRS   HYRMRAEF IWHDGDDLYHIMFD
Sbjct: 6   LPIDQYDAQLEEKTGRLGAMMAPFDAPAPVVFRSPVSHYRMRAEFRIWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R+D F   S LIN LM  ++  +R EP+LR KLFQIDYL++ S +  V+L+YH
Sbjct: 66  QQTKQRIRVDQFPAASELINRLMPVLLNALRAEPVLRRKLFQIDYLSTLSGEIAVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W++ A  L D L A+ + +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 KALDDEWQQQARLLCDGLRAQGFALQLIGRATKTKICLDRDYVDECLPVAGRQMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L+ T+G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAMMNIQMLEWALSVTQGATGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN ++NV+I+RM+++EFTQAM   R+FNRL+ ID+ SYR +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIDNVQIIRMAAEEFTQAMTGVRQFNRLQGIDLKSYRCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ TV +VQAYP ILYISCNP++LC +L  LS TH I +LALFDQFPYT HMECGVLL +
Sbjct: 306 DNETVKLVQAYPRILYISCNPETLCANLETLSQTHQISQLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|294634277|ref|ZP_06712819.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda ATCC 23685]
 gi|291092317|gb|EFE24878.1| tRNA (uracil-5-)-methyltransferase [Edwardsiella tarda ATCC 23685]
          Length = 372

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 238/361 (65%), Positives = 285/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  + Y++QL EK+ RL QMM  F  P +Q FRS   HYRMRAEF IWH+GDDLYHIMFD
Sbjct: 12  LPTEHYDEQLQEKIHRLAQMMQPFGAPAVQAFRSPASHYRMRAEFRIWHEGDDLYHIMFD 71

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            QTK R+R+D F   S LIN LM  ++  +R  P LR KLFQIDYL+++S+QAI++L+YH
Sbjct: 72  AQTKRRIRVDQFPAASELINRLMPLLIDALRPNPTLRHKLFQIDYLSTRSNQAIISLLYH 131

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAWR  A  LR+ L A+ Y +QLIGRA+KTKICLDRD+VDE L +AGR +IYRQ+E
Sbjct: 132 RPLDDAWRHAAQTLRNQLQAQGYDVQLIGRASKTKICLDRDWVDEVLPIAGRDMIYRQVE 191

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN+ MLEW L AT+  +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 192 NSFTQPNAAINIQMLEWALDATQDARGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 251

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI AN ++NV+I+RMS++EFTQAM+  R FNRL+ ID+HSY   TIFVDPPRSGL
Sbjct: 252 AAAQYNITANQIDNVQIIRMSAEEFTQAMQGVRAFNRLQGIDLHSYACNTIFVDPPRSGL 311

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T+ MVQ YP ILYISCNP++LC +L  LS +H + RLALFDQFPYT HMECGVLL R
Sbjct: 312 DAETLNMVQGYPQILYISCNPETLCANLQTLSQSHRMTRLALFDQFPYTHHMECGVLLER 371

Query: 365 K 365
           +
Sbjct: 372 R 372


>gi|218551042|ref|YP_002384833.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|226705981|sp|B7LUM8|TRMA_ESCF3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|218358583|emb|CAQ91231.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|325499293|gb|EGC97152.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii ECD227]
          Length = 366

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAGR +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEVLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|283787354|ref|YP_003367219.1| tRNA (uracil-5)-methyltransferase [Citrobacter rodentium ICC168]
 gi|282950808|emb|CBG90484.1| tRNA (uracil-5)-methyltransferase [Citrobacter rodentium ICC168]
          Length = 366

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 242/361 (67%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMSAMIAGVRNNPVLRQKLFQIDYLTTMSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+AWR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEAWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  T+G +GDLLELYCGNGNFSL LAR+FD VLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTRGSKGDLLELYCGNGNFSLALARNFDHVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM   REFNRLK +D+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANGIENVQIIRMAAEEFTQAMNGVREFNRLKGVDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP +LC++L  LS TH IERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPQTLCKNLETLSQTHKIERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|324111410|gb|EGC05391.1| tRNA (uracil-5-)-methyltransferase [Escherichia fergusonii B253]
          Length = 366

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 245/361 (67%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAGR +IYRQ+E
Sbjct: 126 KKLDDEWRQQAEVLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP +LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPKTLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|242241178|ref|YP_002989359.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech703]
 gi|262827665|sp|C6C5A0|TRMA_DICDC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|242133235|gb|ACS87537.1| tRNA (uracil-5-)-methyltransferase [Dickeya dadantii Ech703]
          Length = 367

 Score =  459 bits (1180), Expect = e-127,   Method: Composition-based stats.
 Identities = 234/362 (64%), Positives = 289/362 (79%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL IDQY+ QLAEK  RL+ MM ++  P  Q+FRS   HYRMRAEF IWHDGDDLYHIMF
Sbjct: 5   TLPIDQYDAQLAEKTGRLKAMMASYHAPEPQVFRSPVSHYRMRAEFRIWHDGDDLYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQTK R+R+D F   S LIN LM  ++  +R    LR KLFQIDYL++ S++ +V+L+Y
Sbjct: 65  DQQTKHRIRVDQFPVASELINRLMPALLNALRPHLTLRRKLFQIDYLSTMSNEIVVSLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LDD WR+ AI LRD L  + + +QLIGRA KTKICLD DYVDE L VAG+ ++YRQ+
Sbjct: 125 HKTLDDEWRQQAIALRDQLRQQGFNLQLIGRATKTKICLDHDYVDECLPVAGKQMVYRQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW L+ T+G +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS
Sbjct: 185 ENSFTQPNAAMNIQMLEWALSVTEGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+AA+YNI AN + NV+I+RM+++EFTQAMR  R+FNRL+ ID+ SYR  TIFVDPPRSG
Sbjct: 245 VQAAQYNITANQIGNVQIIRMAAEEFTQAMRGVRQFNRLEGIDLASYRCDTIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD+ TV +VQ YP ILYISCNP++LC +L+ L+ TH + +LALFDQFPYT HMECGVLL 
Sbjct: 305 LDEETVRLVQEYPRILYISCNPETLCANLATLTQTHRVSQLALFDQFPYTHHMECGVLLE 364

Query: 364 RK 365
           ++
Sbjct: 365 KR 366


>gi|218701325|ref|YP_002408954.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI39]
 gi|226705974|sp|B7NU35|TRMA_ECO7I RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|218371311|emb|CAR19143.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli IAI39]
          Length = 366

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 243/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSNLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMSAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L+D WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLNDEWRQQAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REF+RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFHRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|291619388|ref|YP_003522130.1| TrmA [Pantoea ananatis LMG 20103]
 gi|291154418|gb|ADD79002.1| TrmA [Pantoea ananatis LMG 20103]
 gi|327395711|dbj|BAK13133.1| tRNA (uracil-5-)-methyltransferase TrmA [Pantoea ananatis AJ13355]
          Length = 367

 Score =  458 bits (1179), Expect = e-127,   Method: Composition-based stats.
 Identities = 240/361 (66%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L ++QY+ QLAEKV RL  MM  F  P +++FRS   HYRMRAEF IWH+GDDLYHI+FD
Sbjct: 6   LPVEQYDAQLAEKVSRLETMMTPFAAPAVEVFRSPVSHYRMRAEFRIWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+TK+R+R+D F   S LIN +M +MMA IR   LLR KLFQIDYL++ S Q +++L+YH
Sbjct: 66  QETKQRIRVDQFPAASELINQVMPKMMAAIRDNRLLRHKLFQIDYLSTMSHQIVISLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L A    +QLIGRA KTKICLDRDYVDERL VAG+ +IYRQ+E
Sbjct: 126 RKLDEEWQQAASTLRDQLRAEGIDVQLIGRATKTKICLDRDYVDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  T G +GDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTTGSRGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIAAN V+NV+I+RM+++EFTQAM   R FNRL+ ID+ SY  +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAANQVDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLKSYDCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ TV MVQAYP ILYISCNP +LC +L IL+ TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DEETVKMVQAYPAILYISCNPQTLCDNLRILAQTHDVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|304398951|ref|ZP_07380820.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. aB]
 gi|304353411|gb|EFM17789.1| tRNA (uracil-5-)-methyltransferase [Pantoea sp. aB]
          Length = 367

 Score =  457 bits (1177), Expect = e-127,   Method: Composition-based stats.
 Identities = 237/361 (65%), Positives = 283/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ Y+ QLAEKV RL  MM  F  P++++FRS   HYRMRAEF +WHDGDD+YHI+FD
Sbjct: 6   LPIEDYDAQLAEKVSRLETMMTPFAAPDVEVFRSPVSHYRMRAEFRLWHDGDDIYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LIN LM +M+A IR    LR KLFQIDYL++ S+Q +++L+YH
Sbjct: 66  QQTRERIRVDQFPAASQLINQLMPKMIAAIRDNRTLRHKLFQIDYLSTMSNQIVISLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDD W++ A  LRD L A    +QLIGRA KTKICLDRDYVDE L VAGR +IYRQ+E
Sbjct: 126 RKLDDEWQQAAAALRDQLRAEGLDVQLIGRATKTKICLDRDYVDECLPVAGREIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  T+  QGDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQDSQGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N ++NV+I+RM+++EFTQAM   R FNRL+ ID+ SY  +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLTSYECETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ TV MVQAYP ILYISCNP +L  +L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DEETVKMVQAYPRILYISCNPQTLSDNLQTLSETHDVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|238764509|ref|ZP_04625457.1| tRNA (uracil-5-)-methyltransferase [Yersinia kristensenii ATCC
           33638]
 gi|238697321|gb|EEP90090.1| tRNA (uracil-5-)-methyltransferase [Yersinia kristensenii ATCC
           33638]
          Length = 390

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 241/367 (65%), Positives = 288/367 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D YE QLAEK  RL+ MM  FQ P+ Q+FRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYEHQLAEKSARLQAMMSPFQAPDPQVFRSPAQHYRMRAEFRVWHDDDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSVLMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L  + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKYIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 KPSGWHQ 371
           +     Q
Sbjct: 366 EADEKRQ 372


>gi|186972974|pdb|3BT7|A Chain A, Structure Of E. Coli 5-Methyluridine Methyltransferase
           Trma In Complex With 19 Nucleotide T-Arm Analogue
 gi|186972975|pdb|3BT7|B Chain B, Structure Of E. Coli 5-Methyluridine Methyltransferase
           Trma In Complex With 19 Nucleotide T-Arm Analogue
          Length = 369

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 244/361 (67%), Positives = 290/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 9   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 68

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 69  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 128

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 129 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 188

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 189 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 248

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 249 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 308

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HM+CGVLL  
Sbjct: 309 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMQCGVLLTA 368

Query: 365 K 365
           K
Sbjct: 369 K 369


>gi|168262959|ref|ZP_02684932.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|238912269|ref|ZP_04656106.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|205348285|gb|EDZ34916.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 366

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 240/359 (66%), Positives = 285/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|237728078|ref|ZP_04558559.1| tRNA (uracil-5-)-methyltransferase [Citrobacter sp. 30_2]
 gi|226910335|gb|EEH96253.1| tRNA (uracil-5-)-methyltransferase [Citrobacter sp. 30_2]
          Length = 366

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 233/361 (64%), Positives = 284/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ +M  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYDAQLAEKVVRLQSLMTPFYAQAPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            QTK R+R+D F   S LIN LM  M+  +R   +LR KLFQIDYLT+ S QA+V+++YH
Sbjct: 66  SQTKNRIRVDSFPAASELINTLMTAMIEGVRNNYVLRHKLFQIDYLTTLSGQAVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAKNLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW +  T+G +GDLLELYCGNGNFSL LA++F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWAIDVTRGSKGDLLELYCGNGNFSLALAQNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN + NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANQIENVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH + RLALFDQFPYT HMECGVLL +
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVSRLALFDQFPYTHHMECGVLLTK 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|22124241|ref|NP_667664.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM 10]
 gi|45442891|ref|NP_994430.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51594482|ref|YP_068673.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP
           32953]
 gi|108806109|ref|YP_650025.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Antiqua]
 gi|108810222|ref|YP_645989.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516]
 gi|145600770|ref|YP_001164846.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides F]
 gi|150261126|ref|ZP_01917854.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CA88-4125]
 gi|153948502|ref|YP_001399141.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP
           31758]
 gi|162420223|ref|YP_001604758.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Angola]
 gi|165928371|ref|ZP_02224203.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936942|ref|ZP_02225508.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009523|ref|ZP_02230421.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213748|ref|ZP_02239783.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401208|ref|ZP_02306708.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167420927|ref|ZP_02312680.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425969|ref|ZP_02317722.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467895|ref|ZP_02332599.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis FV-1]
 gi|170026281|ref|YP_001722786.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186893475|ref|YP_001870587.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930911|ref|YP_002348786.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis CO92]
 gi|229839607|ref|ZP_04459766.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229841692|ref|ZP_04461848.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229896696|ref|ZP_04511861.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides A]
 gi|229904754|ref|ZP_04519865.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516]
 gi|270488737|ref|ZP_06205811.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM D27]
 gi|294505561|ref|YP_003569623.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003]
 gi|20178150|sp|Q8ZAA0|TRMA_YERPE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|116256438|sp|Q66G58|TRMA_YERPS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|123246049|sp|Q1CBU2|TRMA_YERPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|123373576|sp|Q1CNP1|TRMA_YERPN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|171704396|sp|A7FD13|TRMA_YERP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|172045573|sp|A4TRG1|TRMA_YERPP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705996|sp|B2JZF7|TRMA_YERPB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705997|sp|A9R6N8|TRMA_YERPG RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705998|sp|B1JQ46|TRMA_YERPY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|21957006|gb|AAM83915.1|AE013632_3 tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM 10]
 gi|45437758|gb|AAS63307.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51587764|emb|CAH19364.1| tRNA (uracil-5)-methyltransferase [Yersinia pseudotuberculosis IP
           32953]
 gi|108773870|gb|ABG16389.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516]
 gi|108778022|gb|ABG12080.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Antiqua]
 gi|115349522|emb|CAL22496.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CO92]
 gi|145212466|gb|ABP41873.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides F]
 gi|149290534|gb|EDM40611.1| tRNA (uracil-5)-methyltransferase [Yersinia pestis CA88-4125]
 gi|152959997|gb|ABS47458.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis IP
           31758]
 gi|162353038|gb|ABX86986.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Angola]
 gi|165915184|gb|EDR33795.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919601|gb|EDR36934.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991445|gb|EDR43746.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205150|gb|EDR49630.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961056|gb|EDR57077.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049233|gb|EDR60641.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055117|gb|EDR64916.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752815|gb|ACA70333.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis
           YPIII]
 gi|186696501|gb|ACC87130.1| tRNA (uracil-5-)-methyltransferase [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678872|gb|EEO74977.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Nepal516]
 gi|229691031|gb|EEO83084.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695973|gb|EEO86020.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700303|gb|EEO88337.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Pestoides A]
 gi|262363628|gb|ACY60349.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis D106004]
 gi|262367558|gb|ACY64115.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis D182038]
 gi|270337241|gb|EFA48018.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis KIM D27]
 gi|294356020|gb|ADE66361.1| tRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003]
 gi|320013491|gb|ADV97062.1| tRNA uracil-5--methyltransferase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 367

 Score =  456 bits (1174), Expect = e-126,   Method: Composition-based stats.
 Identities = 241/361 (66%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ Y+ QLAEK  RL+ MML FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPIESYDHQLAEKSARLKAMMLPFQAPEPEIFRSPADHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   S LIN LM  +M  IR EPLLR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASRLINRLMDALMTAIRAEPLLRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKALELRDQLRAQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW L  T+G  GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWALDVTQGATGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN+++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLGSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DHETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|318603892|emb|CBY25390.1| tRNA (Uracil54-C5-)-methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 367

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 242/362 (66%), Positives = 285/362 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D YE QLAEK  RL+ MM  FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  I  EP+LR KLFQIDYL++ S + + TL+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSALMTAIIAEPILRRKLFQIDYLSTLSGKLLATLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L  + + +QLIGRA+KTKI LD DYVDE L VAGR +IYRQIE
Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYVDEVLPVAGRDMIYRQIE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 KP 366
           + 
Sbjct: 366 RD 367


>gi|238799430|ref|ZP_04642858.1| tRNA (uracil-5-)-methyltransferase [Yersinia mollaretii ATCC 43969]
 gi|238716724|gb|EEQ08612.1| tRNA (uracil-5-)-methyltransferase [Yersinia mollaretii ATCC 43969]
          Length = 367

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 240/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D YE QLAEK  RL+ MML FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYENQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L  + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQQASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN+++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGAREFNRLKGIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGV L +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVWLEK 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|168467481|ref|ZP_02701318.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|200388499|ref|ZP_03215111.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|195630197|gb|EDX48837.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|199605597|gb|EDZ04142.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 366

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 240/359 (66%), Positives = 285/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|308188584|ref|YP_003932715.1| tRNA (uracil-5-)-methyltransferase [Pantoea vagans C9-1]
 gi|308059094|gb|ADO11266.1| tRNA (uracil-5-)-methyltransferase [Pantoea vagans C9-1]
          Length = 367

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 236/361 (65%), Positives = 283/361 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I++Y+ QLAEKV RL  MM  F  P++++FRS   HYRMRAEF +WHDGDD+YHI+FD
Sbjct: 6   LPIEEYDAQLAEKVSRLETMMTPFAAPDVEVFRSPVSHYRMRAEFRLWHDGDDIYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LIN LM +M+A IR    LR KLFQIDYL++ S+Q +++L+YH
Sbjct: 66  QQTRERIRVDQFPAASQLINQLMPKMIAAIRDNRTLRHKLFQIDYLSTMSNQIVISLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDD W + A  LRD L A    +QLIGRA KTKICLDRD+VDE L VAGR +IYRQ+E
Sbjct: 126 RKLDDEWLQAAAALRDQLRAEGLDVQLIGRATKTKICLDRDFVDECLPVAGREIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  T+  QGDLLELYCGNGNFSL LAR+F RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTQDSQGDLLELYCGNGNFSLALARNFRRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N ++NV+I+RM+++EFTQAM   R FNRL+ ID+ SY  +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGVRSFNRLEGIDLTSYECETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ TV MVQAYP ILYISCNP +L  +L  LS TH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DEETVKMVQAYPRILYISCNPQTLSDNLQTLSETHEVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|293393499|ref|ZP_06637809.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera DSM 4582]
 gi|291423834|gb|EFE97053.1| tRNA (uracil-5-)-methyltransferase [Serratia odorifera DSM 4582]
          Length = 367

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 234/362 (64%), Positives = 283/362 (78%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L I++Y++QL EK  RL  MM  F  P  ++FRS   HYRMRAEF IWHD D++YHIMF
Sbjct: 5   NLPIERYDEQLTEKTQRLASMMSPFGAPEPEVFRSPVSHYRMRAEFRIWHDDDEMYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQTK+R+R+D F   S LIN LM  ++A I+ +P+LR KLFQIDYL+++S + I +L+Y
Sbjct: 65  DQQTKQRIRVDRFPAASELINRLMTALIAAIKPQPVLRRKLFQIDYLSTRSGKIIASLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LDD W+  A +LRD L A+ + +QLIGRA+K KI LD DY+DE L VAGR +IYRQ+
Sbjct: 125 HRKLDDEWQRHAEQLRDDLRAQGFDLQLIGRASKMKITLDHDYIDEVLPVAGRDMIYRQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA INV MLEW L  T+  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPS
Sbjct: 185 ENSFTQPNAAINVAMLEWALDVTRHAKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA+YNIAAN V+NV+I+RM+++EFTQAM   R FNRL+ ID+ SY  +TIFVDPPRSG
Sbjct: 245 VAAAQYNIAANQVDNVQIIRMAAEEFTQAMNGVRSFNRLQGIDLSSYNCETIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD TV MVQAYP ILYISCNP++L  +L  L  TH I RLALFDQFPYT HMECGVLL 
Sbjct: 305 LDDETVKMVQAYPRILYISCNPETLSANLDTLQATHDITRLALFDQFPYTHHMECGVLLE 364

Query: 364 RK 365
           ++
Sbjct: 365 KR 366


>gi|168244113|ref|ZP_02669045.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448074|ref|YP_002048126.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|226705989|sp|B4TCR0|TRMA_SALHS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|194406378|gb|ACF66597.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205336861|gb|EDZ23625.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 366

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 239/359 (66%), Positives = 285/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQ+DYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQMDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|317494786|ref|ZP_07953198.1| tRNA (uracil-5-)-methyltransferase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917388|gb|EFV38735.1| tRNA (uracil-5-)-methyltransferase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 367

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 229/363 (63%), Positives = 283/363 (77%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
            TL  DQY+ QL EK+ RL  MM  F  P ++ FRS   HYRMRAEF +WHD  DLYHIM
Sbjct: 4   NTLPTDQYDAQLTEKITRLANMMTPFAAPEIEAFRSPASHYRMRAEFRVWHDESDLYHIM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FDQQTK+R+R+D F   S LIN LM  MM  +R   +LR KLFQIDYL++ +++ +V+L+
Sbjct: 64  FDQQTKQRIRVDQFPAASELINRLMTVMMDELRPNQVLRFKLFQIDYLSTMNNKVVVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W+  A  LRD L  + + IQLIGRA KTKICLD+DYVDE L VAGR ++YRQ
Sbjct: 124 YHRKLDEEWKAQAEALRDRLRTQGFDIQLIGRATKTKICLDQDYVDECLPVAGRDMVYRQ 183

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           +ENSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKP
Sbjct: 184 VENSFTQPNAAVNIKMLEWALDVTKNSKGDLLELYCGNGNFSLALARNFNRVLATEIAKP 243

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV AA++NI+ANH++NV+I+RM++++FTQAM   REF RL+ ID+ SY+ +TIFVDPPRS
Sbjct: 244 SVAAAQFNISANHIDNVQIIRMAAEDFTQAMNGVREFKRLEGIDLKSYQCETIFVDPPRS 303

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLDD T+ MVQAYP ILYISCNP++L  +L  L  TH ++RLALFDQFPYT HMECGVLL
Sbjct: 304 GLDDDTLRMVQAYPRILYISCNPETLSANLETLHETHQVKRLALFDQFPYTHHMECGVLL 363

Query: 363 VRK 365
            ++
Sbjct: 364 EKR 366


>gi|292486641|ref|YP_003529511.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora CFBP1430]
 gi|292897878|ref|YP_003537247.1| tRNA (uracil-5)-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291197726|emb|CBJ44821.1| tRNA (uracil-5)-methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291552058|emb|CBA19095.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora CFBP1430]
          Length = 367

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 238/361 (65%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QYE QL EKV RL  MM AF VP +++FRS   HYRMRAEF IWH+GDDLYHI+FD
Sbjct: 6   LPIEQYEDQLTEKVTRLTSMMSAFNVPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LIN LM  ++  +R + +LR KLFQIDYL++ S Q +V+++YH
Sbjct: 66  QQTRERIRVDSFPAASELINRLMPRLINRLRDQHVLRFKLFQIDYLSTVSGQMVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W+  A  LRD L A  + + LIGRA KTKICLD+DYVDERLTV GR + YRQ+E
Sbjct: 126 RKLDEEWQRAATALRDGLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMTYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L +T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRNASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N ++NV+I+RM+++EFTQAM  ER F RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DDETVKMVQAYPCILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|161505380|ref|YP_001572492.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189036043|sp|A9MHG7|TRMA_SALAR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|160866727|gb|ABX23350.1| hypothetical protein SARI_03534 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 366

 Score =  455 bits (1171), Expect = e-126,   Method: Composition-based stats.
 Identities = 240/361 (66%), Positives = 286/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYDAQLAEKVARLQSMMAPFSGLVPEVFRSPASHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366


>gi|312170705|emb|CBX78968.1| tRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 367

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 237/361 (65%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QYE QL EKV RL  MM AF VP +++FRS   HYRMRAEF IWH+GDDLYHI+FD
Sbjct: 6   LPIEQYEDQLTEKVTRLTSMMSAFNVPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+T+ER+R+D F   S LIN LM  ++  +R + +LR KLFQIDYL++ S Q +V+++YH
Sbjct: 66  QRTRERIRVDSFPAASELINRLMPRLINRLRDQHVLRFKLFQIDYLSTVSGQMVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W+  A  LRD L A  + + LIGRA KTKICLD+DYVDERLTV GR + YRQ+E
Sbjct: 126 RKLDEEWQRAATALRDGLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMTYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L +T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRNASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N ++NV+I+RM+++EFTQAM  ER F RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DDETVKMVQAYPCILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|322834974|ref|YP_004215001.1| tRNA (uracil-5-)-methyltransferase [Rahnella sp. Y9602]
 gi|321170175|gb|ADW75874.1| tRNA (uracil-5-)-methyltransferase [Rahnella sp. Y9602]
          Length = 366

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 228/361 (63%), Positives = 275/361 (76%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L I+ Y+ QLAEK  RL  MM  +  P   +FRS   HYRMRAEF +WHD  DLYHIMF
Sbjct: 5   NLPIEHYDDQLAEKTARLTAMMSPYNAPQPDVFRSPVSHYRMRAEFRVWHDEGDLYHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQTK R+R+D F   S LIN LM +++A I+ +P LR K+FQIDYL+++S + I +L+Y
Sbjct: 65  DQQTKARVRVDQFPTASELINRLMPKLIAAIKQDPALRRKIFQIDYLSTRSGKIIASLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LDD W++ A  LRD L A  + IQLIGRA KTKI LD+DYVDE L VAGR +IYRQ+
Sbjct: 125 HRKLDDEWQQAATALRDQLRADGFDIQLIGRAAKTKIMLDQDYVDEVLPVAGRDMIYRQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW L AT+   GDLLELYCGNGNFSL LAR+F RVLA EIAKPS
Sbjct: 185 ENSFTQPNAEMNIQMLEWALKATENSTGDLLELYCGNGNFSLALARNFRRVLATEIAKPS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA++NIAANH++NV+I+RM++++FTQA+   REF RL+DID+  Y   TIFVDPPRSG
Sbjct: 245 VTAAQFNIAANHIDNVQIIRMAAEDFTQALNGVREFRRLQDIDLSGYECNTIFVDPPRSG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD TV MV  Y  ILYISCNP++LC +L  LS TH + RLALFDQFPYT HME GVLL 
Sbjct: 305 LDDETVKMVAGYDRILYISCNPETLCANLETLSKTHRVTRLALFDQFPYTHHMESGVLLE 364

Query: 364 R 364
           +
Sbjct: 365 K 365


>gi|300714766|ref|YP_003739569.1| tRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661]
 gi|299060602|emb|CAX57709.1| tRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661]
          Length = 366

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 231/361 (63%), Positives = 289/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ Y+ QL EKV RL+ +M  F  P + +FRS   HYRMRAEF +WH+GDDLYHI+FD
Sbjct: 6   LPIEHYDAQLEEKVTRLQTLMTPFAAPEVDVFRSPVSHYRMRAEFRLWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LINALM  ++A +R    LR KLFQ+DYL++ S+Q +V+++YH
Sbjct: 66  QQTRERIRVDSFPAASQLINALMPRLIAAVRDNKTLRHKLFQVDYLSTLSNQIVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L + W++ A  LRDAL A  + +QLIGRA KTKICLDRDYVDE L VAG+ +IYRQ+E
Sbjct: 126 RALTEEWQQEAEALRDALRAEGFDLQLIGRATKTKICLDRDYVDECLPVAGKDIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSSGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N+++NV+I+RMS++EFT+AM+ +R+F RL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNNIDNVQIIRMSAEEFTEAMKGKRQFRRLEGIDLQSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQAYP ILYISCNP +LC +L+ LS THT+E+LALFDQFPYT HMECGVLL R
Sbjct: 306 DADTVKMVQAYPRILYISCNPQTLCENLATLSETHTVEKLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|168237752|ref|ZP_02662810.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737076|ref|YP_002117041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249955|ref|YP_002149050.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|226705985|sp|B5F0V3|TRMA_SALA4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705992|sp|B4TQI0|TRMA_SALSV RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|194712578|gb|ACF91799.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197213658|gb|ACH51055.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289385|gb|EDY28750.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 366

 Score =  455 bits (1170), Expect = e-126,   Method: Composition-based stats.
 Identities = 241/359 (67%), Positives = 285/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|16767393|ref|NP_463008.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62182588|ref|YP_219005.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167991710|ref|ZP_02572809.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233071|ref|ZP_02658129.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168821519|ref|ZP_02833519.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194469976|ref|ZP_03075960.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197261617|ref|ZP_03161691.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198243648|ref|YP_002218056.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205354295|ref|YP_002228096.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859318|ref|YP_002245969.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|17865778|sp|P22038|TRMA_SALTY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|75479266|sp|Q57H88|TRMA_SALCH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705986|sp|B5FPX9|TRMA_SALDC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705987|sp|B5QXR0|TRMA_SALEP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705988|sp|B5REZ3|TRMA_SALG2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|16422696|gb|AAL22967.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62130221|gb|AAX67924.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194456340|gb|EDX45179.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197239872|gb|EDY22492.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197938164|gb|ACH75497.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205274076|emb|CAR39083.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205330014|gb|EDZ16778.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332855|gb|EDZ19619.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341900|gb|EDZ28664.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206711121|emb|CAR35495.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261249244|emb|CBG27106.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996435|gb|ACY91320.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160635|emb|CBW20166.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915245|dbj|BAJ39219.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320088533|emb|CBY98292.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225421|gb|EFX50479.1| tRNA Uracil54-C5--methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322717089|gb|EFZ08660.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323132474|gb|ADX19904.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326625849|gb|EGE32194.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629419|gb|EGE35762.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990957|gb|AEF09940.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 366

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 240/359 (66%), Positives = 285/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|167551369|ref|ZP_02345124.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323670|gb|EDZ11509.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 366

 Score =  454 bits (1169), Expect = e-126,   Method: Composition-based stats.
 Identities = 240/359 (66%), Positives = 285/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLKTLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|56415966|ref|YP_153041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364893|ref|YP_002144530.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|81599682|sp|Q5PK68|TRMA_SALPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705991|sp|B5BJN9|TRMA_SALPK RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|56130223|gb|AAV79729.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096370|emb|CAR61975.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 366

 Score =  454 bits (1168), Expect = e-126,   Method: Composition-based stats.
 Identities = 240/359 (66%), Positives = 285/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|161617272|ref|YP_001591237.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|189036044|sp|A9N0H5|TRMA_SALPB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|161366636|gb|ABX70404.1| hypothetical protein SPAB_05114 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 366

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 240/359 (66%), Positives = 285/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVSRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|16762314|ref|NP_457931.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143802|ref|NP_807144.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213427062|ref|ZP_03359812.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213584060|ref|ZP_03365886.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213646314|ref|ZP_03376367.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289830047|ref|ZP_06547496.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|20178149|sp|Q8Z313|TRMA_SALTI RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|25512146|pir||AC0935 tRNA (uracil-5)-methyltransferase [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504618|emb|CAD09501.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139437|gb|AAO71004.1| tRNA (uracil-5)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 366

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 239/359 (66%), Positives = 285/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|322613117|gb|EFY10061.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619255|gb|EFY16138.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322626121|gb|EFY22933.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626419|gb|EFY23225.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632467|gb|EFY29215.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635050|gb|EFY31771.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642747|gb|EFY39337.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646428|gb|EFY42939.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648557|gb|EFY45007.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654818|gb|EFY51136.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657285|gb|EFY53565.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662228|gb|EFY58443.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669771|gb|EFY65915.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672034|gb|EFY68149.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675755|gb|EFY71827.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681829|gb|EFY77855.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683976|gb|EFY79985.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323193247|gb|EFZ78462.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197605|gb|EFZ82738.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202191|gb|EFZ87246.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207174|gb|EFZ92126.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211376|gb|EFZ96217.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218579|gb|EGA03287.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220939|gb|EGA05371.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226064|gb|EGA10282.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231595|gb|EGA15707.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236903|gb|EGA20974.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239423|gb|EGA23472.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243984|gb|EGA27995.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249347|gb|EGA33264.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250410|gb|EGA34293.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258864|gb|EGA42516.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260888|gb|EGA44488.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265228|gb|EGA48725.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270450|gb|EGA53896.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 366

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 241/359 (67%), Positives = 285/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|123440536|ref|YP_001004530.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|262827716|sp|A1JI40|TRMA_YERE8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|122087497|emb|CAL10278.1| tRNA (uracil-5)-methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 367

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 241/362 (66%), Positives = 285/362 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D YE QLAEK  RL+ MM  FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + + TL+YH
Sbjct: 66  QQTKLRIRVEQFPVASLLINRLMSALMTAIRAEPILRHKLFQIDYLSTLSGKLLATLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L  + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RPLDEEWQQKARELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQYTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 KP 366
           + 
Sbjct: 366 RD 367


>gi|300948246|ref|ZP_07162365.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 116-1]
 gi|300452224|gb|EFK15844.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli MS 116-1]
          Length = 360

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 241/355 (67%), Positives = 286/355 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECG
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG 360


>gi|238754702|ref|ZP_04616054.1| tRNA (uracil-5-)-methyltransferase [Yersinia ruckeri ATCC 29473]
 gi|238707010|gb|EEP99375.1| tRNA (uracil-5-)-methyltransferase [Yersinia ruckeri ATCC 29473]
          Length = 367

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 234/362 (64%), Positives = 284/362 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  + Y+ QLAEK+  L++MM  F+ P  ++FRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTENYDHQLAEKIASLKEMMSPFKAPEPEVFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q TK+R+R++ F   S+LIN LM  +M  IR +P+LR KLFQIDYL+++S + I +L+YH
Sbjct: 66  QHTKQRIRVEQFPVASVLINRLMSALMTAIRAQPILRRKLFQIDYLSTRSGKIIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ AI LRD L    + +QLIGRA KTKI LD DYVDE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQHAIALRDQLRTEGFDLQLIGRAAKTKIMLDNDYVDEILPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW L  TK   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWALDVTKDASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIAANH++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQFNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLQSYHCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD T+ MVQ YP ILYISCNP++L  +L  L  THTI RLALFDQFPYT HMECGV L +
Sbjct: 306 DDETIKMVQGYPRILYISCNPETLSANLEQLQHTHTISRLALFDQFPYTHHMECGVWLEK 365

Query: 365 KP 366
           + 
Sbjct: 366 RD 367


>gi|332998875|gb|EGK18469.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-218]
          Length = 362

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 243/361 (67%), Positives = 288/361 (79%), Gaps = 4/361 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LR    A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALR----AQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 181

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 182 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 241

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+F+TIFVDPPRSGL
Sbjct: 242 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 301

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 302 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 361

Query: 365 K 365
           K
Sbjct: 362 K 362


>gi|259906846|ref|YP_002647202.1| tRNA (uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224962468|emb|CAX53923.1| tRNA (Uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283476638|emb|CAY72466.1| tRNA (uracil-5-)-methyltransferase [Erwinia pyrifoliae DSM 12163]
          Length = 367

 Score =  453 bits (1166), Expect = e-125,   Method: Composition-based stats.
 Identities = 236/361 (65%), Positives = 287/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QYE QL EKV RL  MM AF  P +++FRS   HYRMRAEF IWH+GDDLYHI+FD
Sbjct: 6   LPIEQYEDQLTEKVTRLTSMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LIN LM  ++  IR + +LR KLFQIDYL++ S Q +V+++YH
Sbjct: 66  QQTRERIRVDNFPAASELINRLMPRLIDRIRDQRVLRFKLFQIDYLSTVSGQMVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD+L A  + + LIGRA KTKICLD+DYVDERLTV G  + YRQ+E
Sbjct: 126 RKLDEEWQQAAKALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGHEITYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L +T+  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRHARGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N + NV+I+RM+++EFTQAM  ER F RL+ ID+ SY+ +T+FVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIENVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETLFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL R
Sbjct: 306 DDETVKMVQAYPRILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|194442689|ref|YP_002043391.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|226705990|sp|B4T0X5|TRMA_SALNS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|194401352|gb|ACF61574.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 366

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 238/359 (66%), Positives = 284/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQ+DYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQMDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFT AM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTLAMNGVREFNRLQGIDLKGYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|238785773|ref|ZP_04629745.1| tRNA (uracil-5-)-methyltransferase [Yersinia bercovieri ATCC 43970]
 gi|238713307|gb|EEQ05347.1| tRNA (uracil-5-)-methyltransferase [Yersinia bercovieri ATCC 43970]
          Length = 367

 Score =  453 bits (1165), Expect = e-125,   Method: Composition-based stats.
 Identities = 239/362 (66%), Positives = 286/362 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D Y+ QLAEK  RL+ MML FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYDHQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDDDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A+ LRD L  + + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKALELRDQLREQGFDLQLIGRAAKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN+++NV+I+RMS++EFTQAM+  REF RLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFTRLKGIDLKSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 KP 366
           + 
Sbjct: 366 RD 367


>gi|37528553|ref|NP_931898.1| tRNA (uracil-5-)-methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|50401483|sp|Q7MAX6|TRMA_PHOLL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|36787991|emb|CAE17108.1| tRNA (Uracil-5-)-methyltransferase [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 366

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 227/364 (62%), Positives = 287/364 (78%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L  + YEQQL EKV RL+ MM  FQ P  ++FRS   HYRMRAEF IWH+ DDLYH
Sbjct: 1   MQNLLPTESYEQQLTEKVSRLKNMMAPFQPPRPEVFRSPLSHYRMRAEFRIWHEQDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQTK+R+R+  F   S LIN +M+ ++ +IR E +L  KLFQIDYL++ S++ +V+
Sbjct: 61  IMFDQQTKQRIRLVQFPVASKLINKMMVVLIDSIRSEQILCHKLFQIDYLSTCSNKILVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L + W + A+RLR+AL  + + ++LIGRA KTKI LD DY+DE L VAGR +IY
Sbjct: 121 LLYHKKLGEEWTQQALRLREALRHKGFDVELIGRAAKTKITLDHDYIDEVLPVAGRKMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+HMLEW +  TK  +GDLLELYCGNGNFSL LA++F+RVLA EIA
Sbjct: 181 RQVENSFTQPNASVNIHMLEWAINITKDSKGDLLELYCGNGNFSLALAQNFERVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNI AN ++NV+I+RMS++EFTQAM  EREFNRL+ I++ SY+ +TIFVDPP
Sbjct: 241 KPSVAAAQYNITANGIDNVQIIRMSAEEFTQAMNGEREFNRLQGINLKSYQCETIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD+ T+ MV+AYP ILYISCNP++LC +L  L+ TH I  LALFDQFPYT HMECGV
Sbjct: 301 RSGLDEKTLEMVRAYPRILYISCNPETLCHNLETLTQTHKISHLALFDQFPYTHHMECGV 360

Query: 361 LLVR 364
           LL +
Sbjct: 361 LLEK 364


>gi|238789624|ref|ZP_04633408.1| tRNA (uracil-5-)-methyltransferase [Yersinia frederiksenii ATCC
           33641]
 gi|238722377|gb|EEQ14033.1| tRNA (uracil-5-)-methyltransferase [Yersinia frederiksenii ATCC
           33641]
          Length = 367

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 237/362 (65%), Positives = 287/362 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D Y+ QLAEK  RL+ MM  FQ P  ++FRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYDHQLAEKSARLQAMMSPFQAPAPEVFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   S+LIN LM  +M  IR EP+LR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASVLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A+ LRD L  + + +QLIGRA+KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKALELRDQLREQGFDLQLIGRASKTKIMLDHDYIDEVLPVAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAAN+++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANNIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEQ 365

Query: 365 KP 366
           + 
Sbjct: 366 RD 367


>gi|310766062|gb|ADP11012.1| tRNA (uracil-5-)-methyltransferase [Erwinia sp. Ejp617]
          Length = 367

 Score =  452 bits (1163), Expect = e-125,   Method: Composition-based stats.
 Identities = 235/363 (64%), Positives = 287/363 (79%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           G L I+QYE QL EKV RL  MM AF  P +++FRS   HYRMRAEF IWH+GDDLYHI+
Sbjct: 4   GQLPIEQYEDQLTEKVTRLTSMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHII 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FDQQT+ER+R+D F   S LIN +M  ++  IR + +LR KLFQIDYL++ S Q +V+++
Sbjct: 64  FDQQTRERIRVDSFPAASELINRVMPRLIDRIRDQRVLRFKLFQIDYLSTVSGQMVVSML 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W++ A  LRD+L A  + + LIGRA KTKICLD+DYVDERL V G  + YRQ
Sbjct: 124 YHRKLDEEWQQAATALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLIVDGHEMTYRQ 183

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           +ENSFTQPNA +NV MLEW L +T+  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKP
Sbjct: 184 VENSFTQPNAAVNVKMLEWALDSTRHARGDLLELYCGNGNFSLALARNFNRVLATEIAKP 243

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV +A+YNIA N + NV+I+RM+++EFTQAM  ER F RL+ ID+ SY+ +T+FVDPPRS
Sbjct: 244 SVASAQYNIAVNQIENVQIIRMAAEEFTQAMNGERRFKRLEGIDLTSYQCETLFVDPPRS 303

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLDD TV MVQAYP ILYISCNP +LC +L+ LSTTH I RLALFDQFPYT HMECGVLL
Sbjct: 304 GLDDETVKMVQAYPRILYISCNPQTLCDNLATLSTTHDITRLALFDQFPYTHHMECGVLL 363

Query: 363 VRK 365
            R+
Sbjct: 364 TRR 366


>gi|212712482|ref|ZP_03320610.1| hypothetical protein PROVALCAL_03577 [Providencia alcalifaciens DSM
           30120]
 gi|212684698|gb|EEB44226.1| hypothetical protein PROVALCAL_03577 [Providencia alcalifaciens DSM
           30120]
          Length = 366

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 221/365 (60%), Positives = 284/365 (77%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  TL  + Y+ QLAEKVDRL+ +M  +  P  +IF S   HYRMRAEF IWH+GDDL+H
Sbjct: 2   MQNTLHTEDYQLQLAEKVDRLKSLMAPYAAPEPEIFSSPTSHYRMRAEFRIWHEGDDLFH 61

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFD++TKER+R+  F   S LIN +M E++  ++   LLR KLFQIDYL++ S++ IV+
Sbjct: 62  IMFDKETKERIRMTSFPVASQLINDMMAELLPLLKRTELLRHKLFQIDYLSTLSNKLIVS 121

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L D W E A +L++ L A+ + +Q+IGRA+KTKI LD DYVDE L V G+ ++Y
Sbjct: 122 LLYHKKLGDEWTEQAKQLKEDLVAKGFDVQIIGRASKTKIMLDHDYVDEILPVKGKDMVY 181

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW + AT+   GDLLELYCGNGNFSL LA++F++VLA EIA
Sbjct: 182 RQVENSFTQPNAQVNIKMLEWAIDATQHSTGDLLELYCGNGNFSLALAQNFNKVLATEIA 241

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNI AN +NNV+I+RMS+++FTQAM   REFNRL+ I++  Y+  TIFVDPP
Sbjct: 242 KPSVHAAQYNIEANKINNVQIIRMSAEDFTQAMNGVREFNRLEGINLADYQCNTIFVDPP 301

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLDD TV +VQ Y HILYISCNP++LC +L+ L+ TH IE+LALFDQFPYT HME GV
Sbjct: 302 RSGLDDKTVQLVQEYDHILYISCNPETLCDNLAELTKTHRIEKLALFDQFPYTHHMESGV 361

Query: 361 LLVRK 365
           LL R+
Sbjct: 362 LLTRR 366


>gi|332159760|ref|YP_004296337.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325663990|gb|ADZ40634.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861647|emb|CBX71825.1| tRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica W22703]
          Length = 367

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 241/362 (66%), Positives = 285/362 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D YE QLAEK  RL+ MM  FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDGYEHQLAEKSARLQAMMSPFQAPAAEIFRSPAEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   SLLIN LM  +M  IR EP+LR KLFQIDYL++ S + + TL+YH
Sbjct: 66  QQTKQRIRVEQFPVASLLINRLMSALMTAIRAEPILRRKLFQIDYLSTLSGKLLATLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  L+D L  + + +QLIGRA+KTKI LD DYVDE L VAGR +IYRQIE
Sbjct: 126 RPLDEEWQQKARELQDQLREQGFDLQLIGRASKTKIMLDHDYVDEVLPVAGRDMIYRQIE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           N FTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NCFTQPNAAVNIHMLEWAIDVTQHASGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFNRLKGIDLTSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQAYP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQAYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 KP 366
           + 
Sbjct: 366 RD 367


>gi|261346835|ref|ZP_05974479.1| tRNA (uracil-5-)-methyltransferase [Providencia rustigianii DSM
           4541]
 gi|282565014|gb|EFB70549.1| tRNA (uracil-5-)-methyltransferase [Providencia rustigianii DSM
           4541]
          Length = 365

 Score =  452 bits (1162), Expect = e-125,   Method: Composition-based stats.
 Identities = 217/365 (59%), Positives = 284/365 (77%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  TL  + YE QLAEK++RL+ +M  +  P  ++F S   HYRMRAEF IWHDGDDL+H
Sbjct: 1   MQNTLHTEDYELQLAEKINRLKSLMAPYAAPEPEVFSSSKSHYRMRAEFRIWHDGDDLFH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFD++TKER+RI+ F   S LIN +M+E++  ++   LLR KLFQIDYL++ S++ I++
Sbjct: 61  IMFDKETKERIRIESFPVASQLINDMMVELLPLLKKSELLRHKLFQIDYLSTLSNKLIIS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L D W   A +L+  L A+ + +Q+IGRA+KTKI LD DYVDE L V G+ +IY
Sbjct: 121 LLYHKKLGDEWITEAKQLKADLIAKGFDVQVIGRASKTKIMLDHDYVDEILPVNGKEMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW + AT+   GDLLELYCGNGNFSL LA++F++VLA EIA
Sbjct: 181 RQVENSFTQPNAQVNIKMLEWAINATQNSTGDLLELYCGNGNFSLALAQNFNKVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV+AA+YNI AN ++NV+I+RMS+++FTQAM+  REF RL  I++  Y+  TIFVDPP
Sbjct: 241 KPSVQAAQYNIEANKIDNVQIIRMSAEDFTQAMKGVREFRRLDGINLADYQCNTIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLDD TV +VQ Y HILYISCNP++LC +L+ L+ TH +E+LALFDQFPYT HME GV
Sbjct: 301 RSGLDDKTVQLVQEYDHILYISCNPETLCDNLAELTKTHKVEKLALFDQFPYTHHMESGV 360

Query: 361 LLVRK 365
           LL R+
Sbjct: 361 LLTRR 365


>gi|188532302|ref|YP_001906099.1| tRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|226705980|sp|B2VGA5|TRMA_ERWT9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|188027344|emb|CAO95189.1| tRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 367

 Score =  451 bits (1160), Expect = e-125,   Method: Composition-based stats.
 Identities = 236/361 (65%), Positives = 288/361 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+ YE QLAEKV RL  MM AF  P +++FRS   HYRMRAEF IWH+GDDLYHI+FD
Sbjct: 6   LPIEHYEDQLAEKVTRLTTMMSAFNAPEVEVFRSAVSHYRMRAEFRIWHEGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQT+ER+R+D F   S LIN LM  ++  IR + LLR KLFQ+DYL++ S Q +V+++YH
Sbjct: 66  QQTRERIRVDSFPAASELINRLMPRLIEKIRDQRLLRFKLFQVDYLSTVSGQIVVSMLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD+L A  + + LIGRA KTKICLD+DYVDERLTV GR ++YRQ+E
Sbjct: 126 RKLDEEWQQAAAALRDSLRAEGFDLHLIGRATKTKICLDQDYVDERLTVDGREMVYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +NV MLEW L +T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNVKMLEWALDSTRHSAGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N ++NV+I+RM+++EFTQAM  ER F RL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 ASAQYNIAVNQIDNVQIIRMAAEEFTQAMNGERSFRRLEGIDLTRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV MVQAYP ILYISCNP +LC +L+ LSTTH + RLALFDQFPYT HMECGVLL R
Sbjct: 306 DDETVKMVQAYPRILYISCNPQTLCENLTALSTTHDVTRLALFDQFPYTHHMECGVLLTR 365

Query: 365 K 365
           +
Sbjct: 366 R 366


>gi|204930249|ref|ZP_03221226.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320653|gb|EDZ05855.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 366

 Score =  451 bits (1160), Expect = e-125,   Method: Composition-based stats.
 Identities = 239/359 (66%), Positives = 284/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWRKAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI ANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNITANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|224585942|ref|YP_002639741.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254789079|sp|C0Q481|TRMA_SALPC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|224470470|gb|ACN48300.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 366

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 239/359 (66%), Positives = 284/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL L R+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALTRNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 364


>gi|157147235|ref|YP_001454554.1| tRNA (uracil-5-)-methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|172045587|sp|A8AKV5|TRMA_CITK8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157084440|gb|ABV14118.1| hypothetical protein CKO_03026 [Citrobacter koseri ATCC BAA-895]
          Length = 366

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 238/359 (66%), Positives = 286/359 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QY+ QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGDDLYHI+F+
Sbjct: 6   LPTEQYDAQLAEKVVRLQSMMAPFSDLVPEVFRSPASHYRMRAEFRLWHDGDDLYHIIFE 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+  +R   +LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIEGVRHNRVLRHKLFQIDYLTTMSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAETLRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L ATK  +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDATKASKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQAYP ILYISCNP++LC++L  LS TH + RLALFDQFPYT HMECGVLL 
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHNVSRLALFDQFPYTHHMECGVLLT 364


>gi|227354694|ref|ZP_03839113.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis ATCC 29906]
 gi|227165204|gb|EEI50029.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 393

 Score =  450 bits (1157), Expect = e-124,   Method: Composition-based stats.
 Identities = 219/365 (60%), Positives = 282/365 (77%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  +L    Y+ QL EK +RL++MM  F  PN+++F S   HYRMRAEF IWH+ D LYH
Sbjct: 29  MQNSLPTQTYQSQLNEKTERLQKMMAPFNAPNVEVFSSPEQHYRMRAEFRIWHEQDALYH 88

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ+TK+R+R+D F   S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+
Sbjct: 89  IMFDQETKQRIRVDQFPVASQLINQMMVALLAEIKDKPTLRHKLFQIDYLSTLSNKIIVS 148

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ +D+ W++ A  LR  L A+ + +QLIGRA KTKI LD D+VDE L VAG+ +IY
Sbjct: 149 LLYHKKIDETWQQEATALRQTLIAQGFDVQLIGRAYKTKIMLDNDFVDEILPVAGQQMIY 208

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW L+ T+   GDLLELYCGNGNFSL LAR+F RVLA EIA
Sbjct: 209 RQVENSFTQPNAQVNIKMLEWALSVTENSTGDLLELYCGNGNFSLALARNFKRVLATEIA 268

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNIA NH++NVKI+RMS+++FTQAM   REF RL+ I++  Y+ +TIFVDPP
Sbjct: 269 KPSVHAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGINLQDYQCETIFVDPP 328

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD+ TV +V+ Y  ILYISCNP +LC++L  L  TH I +LALFDQFPYT HMECGV
Sbjct: 329 RSGLDEKTVELVKNYSRILYISCNPQTLCQNLETLIKTHKISKLALFDQFPYTHHMECGV 388

Query: 361 LLVRK 365
           LL ++
Sbjct: 389 LLEKR 393


>gi|238750874|ref|ZP_04612372.1| tRNA (uracil-5-)-methyltransferase [Yersinia rohdei ATCC 43380]
 gi|238711018|gb|EEQ03238.1| tRNA (uracil-5-)-methyltransferase [Yersinia rohdei ATCC 43380]
          Length = 367

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 234/362 (64%), Positives = 284/362 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L    YE QLAEK  RL+ MML FQ P  +IFRS   HYRMRAEF +WHD  DLYHIMFD
Sbjct: 6   LPTASYEHQLAEKSARLQAMMLPFQAPAPEIFRSPAEHYRMRAEFRVWHDEGDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   S LIN+LM  +M  IR EP+LR KLFQIDYL++ S + + +L+YH
Sbjct: 66  QQTKQRIRVEQFPVASRLINSLMNVLMTAIRAEPILRRKLFQIDYLSTLSGKLVASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A  LRD L A+ + +QLIGRA+KTKI LD DY+DE L +AGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKARELRDQLRAQGFDLQLIGRASKTKIMLDHDYIDEVLPIAGREMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQDASGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RMS++EFTQAM+  REF RL+ ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMSAEEFTQAMQGVREFRRLQGIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD TV +VQ YP ILYISCNP++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETVKLVQTYPRILYISCNPETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 KP 366
           + 
Sbjct: 366 RD 367


>gi|197287058|ref|YP_002152930.1| tRNA (uracil-5-)-methyltransferase [Proteus mirabilis HI4320]
 gi|262827918|sp|B4F1H4|TRMA_PROMH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|194684545|emb|CAR46359.1| tRNA (uracil-5)-methyltransferase [Proteus mirabilis HI4320]
          Length = 365

 Score =  449 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 219/365 (60%), Positives = 282/365 (77%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  +L    Y+ QL EK +RL++MM  F  PN+++F S   HYRMRAEF IWH+ D LYH
Sbjct: 1   MQNSLPTQTYQSQLNEKTERLQKMMAPFNAPNVEVFSSPEQHYRMRAEFRIWHEQDALYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ+TK+R+R+D F   S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+
Sbjct: 61  IMFDQETKQRIRVDQFPVASQLINQMMVALLAEIKDKPTLRHKLFQIDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ +D+ W++ A  LR  L A+ + +QLIGRA KTKI LD D+VDE L VAG+ +IY
Sbjct: 121 LLYHKKIDETWQQEATALRQTLIAQGFDVQLIGRAYKTKIMLDNDFVDEVLPVAGQQMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW L+ T+   GDLLELYCGNGNFSL LAR+F RVLA EIA
Sbjct: 181 RQVENSFTQPNAQVNIKMLEWALSVTENSTGDLLELYCGNGNFSLALARNFKRVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNIA NH++NVKI+RMS+++FTQAM   REF RL+ I++  Y+ +TIFVDPP
Sbjct: 241 KPSVHAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGINLQDYQCETIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD+ TV +V+ Y  ILYISCNP +LC++L  L  TH I +LALFDQFPYT HMECGV
Sbjct: 301 RSGLDEKTVELVKNYSRILYISCNPQTLCQNLETLIKTHKISKLALFDQFPYTHHMECGV 360

Query: 361 LLVRK 365
           LL ++
Sbjct: 361 LLEKR 365


>gi|238760129|ref|ZP_04621277.1| tRNA (uracil-5-)-methyltransferase [Yersinia aldovae ATCC 35236]
 gi|238701627|gb|EEP94196.1| tRNA (uracil-5-)-methyltransferase [Yersinia aldovae ATCC 35236]
          Length = 367

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 237/362 (65%), Positives = 287/362 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  D Y+QQLAEK  RL+ MM  FQ P  +IFRS   HYRMRAEF +WHD DDLYHIMFD
Sbjct: 6   LPTDSYDQQLAEKSARLQAMMSPFQAPAAEIFRSPVEHYRMRAEFRVWHDEDDLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R+R++ F   +LLIN+LM  +M  IR EPLLR KLFQIDYL++ S + I +L+YH
Sbjct: 66  QQTKQRIRVEQFPVANLLINSLMSVLMTAIRAEPLLRRKLFQIDYLSTMSGKLIASLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD+ W++ A+ LRD L A+ + +QLIGRA KTKI LD DY+DE L VAGR +IYRQ+E
Sbjct: 126 RQLDEEWQQKALVLRDQLRAQGFDVQLIGRAAKTKIMLDHDYIDEVLPVAGRDMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+HMLEW +  T+   GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAVNIHMLEWAIDVTQNASGDLLELYCGNGNFSLALARNFERVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNI+AN+++NV+I+RMS++EFTQAM+  REFNRLK ID+ SY  +TIFVDPPRSGL
Sbjct: 246 AAAQYNISANNIDNVQIIRMSAEEFTQAMQGIREFNRLKGIDLSSYNCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DD T+ MVQ YP ILYISCN ++LC +L  L  TH I RLALFDQFPYT HMECGVLL +
Sbjct: 306 DDETLKMVQGYPRILYISCNLETLCANLEQLQHTHKISRLALFDQFPYTHHMECGVLLEK 365

Query: 365 KP 366
           + 
Sbjct: 366 RD 367


>gi|291327277|ref|ZP_06127642.2| tRNA (uracil-5-)-methyltransferase [Providencia rettgeri DSM 1131]
 gi|291311120|gb|EFE51573.1| tRNA (uracil-5-)-methyltransferase [Providencia rettgeri DSM 1131]
          Length = 369

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 220/364 (60%), Positives = 277/364 (76%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  TL  + YEQQL EK DRL+ MM  F  P  +IF S   HYRMRAEF IWH+GDDL+H
Sbjct: 5   MPNTLHTEDYEQQLVEKTDRLKAMMAPFNAPEPEIFSSPTSHYRMRAEFRIWHEGDDLFH 64

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMF+++TKER+RID F   S LIN +M  ++  I+   LLR KLFQIDYL++ S++ IV+
Sbjct: 65  IMFNKETKERIRIDQFPVASQLINDMMAALLPLIKQNELLRHKLFQIDYLSTLSNKLIVS 124

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L + W   A  L+ AL  + + +QLIGRA+KTKI LD DYVDE L V G+ ++Y
Sbjct: 125 LLYHKKLGEEWMAEAKALKAALVEQGFDVQLIGRASKTKIMLDNDYVDEVLPVMGKNMVY 184

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW + +T+   GDLLELYCGNGNFSL LA++F+RVLA EIA
Sbjct: 185 RQVENSFTQPNAQVNIKMLEWAIESTQNSTGDLLELYCGNGNFSLALAQNFERVLATEIA 244

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNI AN++ NV+I+RMS+++FTQAM+  REF RL+ I +  Y+  TIFVDPP
Sbjct: 245 KPSVAAAQYNIEANNIENVQIIRMSAEDFTQAMQGAREFRRLEGISLADYQCNTIFVDPP 304

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           RSGLD  TV +VQ Y HILYISCNP++LC +L+ L+ TH IE+LALFDQFPYT HME GV
Sbjct: 305 RSGLDAETVKLVQGYEHILYISCNPETLCDNLAELTKTHKIEKLALFDQFPYTHHMESGV 364

Query: 361 LLVR 364
           LL R
Sbjct: 365 LLSR 368


>gi|188025467|ref|ZP_02958774.2| hypothetical protein PROSTU_00526 [Providencia stuartii ATCC 25827]
 gi|188023296|gb|EDU61336.1| hypothetical protein PROSTU_00526 [Providencia stuartii ATCC 25827]
          Length = 367

 Score =  445 bits (1144), Expect = e-123,   Method: Composition-based stats.
 Identities = 223/364 (61%), Positives = 284/364 (78%), Gaps = 1/364 (0%)

Query: 3   GTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
            TL+  + YE QLAEKV+RL+ MM  +     ++F S   HYRMRAEF +WHDGDDL+HI
Sbjct: 4   ATLMNTEHYELQLAEKVERLKTMMAPYTAMEPEVFTSPESHYRMRAEFRVWHDGDDLFHI 63

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           MFD++TKER+RID F   S LIN +M E++  I+   LLR KLFQIDYL++ S++ IV+L
Sbjct: 64  MFDKETKERVRIDQFPVASQLINNIMAEILPLIKENALLRHKLFQIDYLSTLSNKLIVSL 123

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YH+ L + W E A +L+  L  + + +QLIGRA+KTKI LD DYVDE L V G+ +IYR
Sbjct: 124 LYHKKLTEEWIEAAKQLKTTLINKGFDLQLIGRASKTKIMLDNDYVDEILPVNGKNMIYR 183

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q+ENSFTQPNA +N+ MLEW + AT+G  GDLLELYCGNGNFSL LA++F+RVLA EIAK
Sbjct: 184 QVENSFTQPNAQVNIKMLEWAIDATQGATGDLLELYCGNGNFSLALAQNFERVLATEIAK 243

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           PSV AA+YNIAAN ++NV+I+RMS+++FTQAMR  REF RL  I++  Y+  TIFVDPPR
Sbjct: 244 PSVAAAQYNIAANQIDNVQIIRMSAEDFTQAMRGVREFKRLDGINLADYQCNTIFVDPPR 303

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           SGLDD TV +VQ Y +ILYISCNP++LC +LS+L+ TH I++LALFDQFPYT HME GVL
Sbjct: 304 SGLDDKTVQLVQEYDNILYISCNPETLCDNLSVLNATHKIKKLALFDQFPYTHHMESGVL 363

Query: 362 LVRK 365
           L R+
Sbjct: 364 LTRR 367


>gi|262273152|ref|ZP_06050968.1| tRNA (Uracil54-C5-)-methyltransferase [Grimontia hollisae CIP
           101886]
 gi|262222730|gb|EEY74039.1| tRNA (Uracil54-C5-)-methyltransferase [Grimontia hollisae CIP
           101886]
          Length = 368

 Score =  444 bits (1142), Expect = e-123,   Method: Composition-based stats.
 Identities = 207/368 (56%), Positives = 269/368 (73%), Gaps = 3/368 (0%)

Query: 1   MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           MS TL+   QY+ QL EK+ R++    AF  P L++F S   HYRMRAEF +WH+GDDLY
Sbjct: 1   MSNTLIDTTQYQAQLDEKIARMQSAFEAFNAPELEVFPSPDKHYRMRAEFRVWHEGDDLY 60

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           +IMF+Q+TK++ R+D F   S +IN LM  ++  I+    LR KLFQ+D+L++ S + +V
Sbjct: 61  YIMFNQETKQKYRVDQFPQASRIINDLMPLLLDAIKPVESLRRKLFQVDFLSTLSGEVLV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +++YHR LD+ W   A  L+  L+   + + LIGRA K KI +DRDYV E+L+V  RTL 
Sbjct: 121 SMLYHRQLDEEWEANARMLKQRLNDEGFNLNLIGRARKQKIVIDRDYVVEKLSVNDRTLT 180

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q+ENSFTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA +FDRVLA E+
Sbjct: 181 YQQVENSFTQPNGKVAEKMLEWAIDCTQDSTGDLLELYCGNGNFSLALAENFDRVLATEL 240

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFV 297
           AKPSVE+A++NIAAN+++NV+I+RMS++EFT+AM  +REF RL+   ID+ SY   TIFV
Sbjct: 241 AKPSVESAQWNIAANNIDNVQIIRMSAEEFTEAMEGKREFRRLQQAGIDLKSYHCNTIFV 300

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPRSG+D+ T  MVQ Y  ILYISCNP++L  +L ILS TH I R ALFDQFPYT HME
Sbjct: 301 DPPRSGMDEGTCRMVQGYDRILYISCNPETLKENLEILSETHRITRFALFDQFPYTHHME 360

Query: 358 CGVLLVRK 365
            GVLL RK
Sbjct: 361 AGVLLERK 368


>gi|260914579|ref|ZP_05921047.1| tRNA (uracil-5-)-methyltransferase [Pasteurella dagmatis ATCC
           43325]
 gi|260631370|gb|EEX49553.1| tRNA (uracil-5-)-methyltransferase [Pasteurella dagmatis ATCC
           43325]
          Length = 365

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 209/365 (57%), Positives = 272/365 (74%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L I+QY+  LAEK  +L  ++  F  P++++F S   +YRMRAEF IWH+  D YH
Sbjct: 1   MQSKLPIEQYDSLLAEKQQKLTALLAPFNPPSIEVFSSPVQNYRMRAEFRIWHNQGDFYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQT++R R+D F   S LIN +M  ++  ++ E  L  KLFQIDYL++ S++ IV+
Sbjct: 61  IMFDQQTRQRYRVDTFPIASELINQMMTALLPLLKTERALHHKLFQIDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ LD+ W E A +L+ AL  + + +Q+IGRA+K KICLD ++VDE LTV  +  +Y
Sbjct: 121 LLYHKTLDEQWEEAAKQLKLALEQQGFDVQIIGRASKQKICLDNEFVDEVLTVHSKPYVY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N  MLEW +  TKG QGDLLELYCGNGNFS+ LA++F +VLA EIA
Sbjct: 181 RQVENSFTQPNAMVNQKMLEWAIDCTKGSQGDLLELYCGNGNFSIALAQNFRKVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA++NIA N V+N++I+RMS++EFTQA+   REFNRLK ID+ +Y   TIFVDPP
Sbjct: 241 KPSVAAAQFNIAENGVDNLQIIRMSAEEFTQAINGVREFNRLKGIDLKAYECNTIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD+ TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV
Sbjct: 301 RAGLDEETVKLVQGYDRILYISCNPHTLCDNLQTLSQTHYIEKAALFDQFPYTDHMETGV 360

Query: 361 LLVRK 365
            L+RK
Sbjct: 361 WLIRK 365


>gi|325576854|ref|ZP_08147469.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC
           33392]
 gi|325161060|gb|EGC73178.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae ATCC
           33392]
          Length = 363

 Score =  438 bits (1127), Expect = e-121,   Method: Composition-based stats.
 Identities = 206/361 (57%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K ++L  ++  F  P + +F S   HYRMRAEF IWHD  D YHIMFD
Sbjct: 3   LPISQYTELLQKKTEKLTALLQPFNAPEIAVFDSPTSHYRMRAEFRIWHDKGDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QSTLQRYRVDEFPIASKLINRMMKTLLPLLKTQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W+  A  L+D L    + +QLIGRA+K KICL++D+VDE L V GR  +YRQ+E
Sbjct: 123 KQLTEEWQNAAENLKDELQQLDFDVQLIGRASKQKICLEQDFVDEVLPVKGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+G QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNAAVNCKMLEWAIDCTQGSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y+  TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYQCNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV LVR
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCENLQTLSQTHRIEKAALFDQFPYTDHMESGVWLVR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|28899713|ref|NP_799318.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361664|ref|ZP_05774691.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus K5030]
 gi|260879374|ref|ZP_05891729.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|260897201|ref|ZP_05905697.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|33301718|sp|Q87KN8|TRMA_VIBPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|28807965|dbj|BAC61202.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089331|gb|EFO39026.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
           Peru-466]
 gi|308092833|gb|EFO42528.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
           AN-5034]
 gi|308111286|gb|EFO48826.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus K5030]
 gi|328472459|gb|EGF43325.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 10329]
          Length = 369

 Score =  437 bits (1125), Expect = e-121,   Method: Composition-based stats.
 Identities = 204/361 (56%), Positives = 268/361 (74%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+ W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS
Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIILDRDYVIEKLDVNGQSYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+RMS++EFT+AM  +REF RLKD  +D+ SY   TIFVDPPR+G+
Sbjct: 248 AQYNIAANKIDNVQIIRMSAEEFTEAMEGKREFRRLKDNGVDLKSYNCNTIFVDPPRAGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L ILS TH + R ALFDQFPYT HME GVLL R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILSETHNVTRFALFDQFPYTHHMEAGVLLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|301155200|emb|CBW14665.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae
           T3T1]
          Length = 363

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 205/361 (56%), Positives = 264/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K ++L  ++  F  P + +F S   HYRMRAEF IWHD  D YHIMFD
Sbjct: 3   LPISQYTELLQKKTEKLTALLQPFNAPEIAVFDSPTSHYRMRAEFRIWHDKGDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QTTLQRYRVDEFPIASELINRMMKALLPLLKTQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W+  A  L+  L    + +QLIGRA+K KICL++D+VDE L V GR  +YRQ+E
Sbjct: 123 KQLTEEWQSAAANLKGELQQLGFDVQLIGRASKQKICLEQDFVDEVLPVKGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+G QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNAAVNCKMLEWAIDCTQGSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y+  TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKTYQCNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV LVR
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCENLQTLSQTHRIEKAALFDQFPYTDHMESGVWLVR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|315635167|ref|ZP_07890445.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC
           33393]
 gi|315476129|gb|EFU66883.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC
           33393]
          Length = 368

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/362 (58%), Positives = 270/362 (74%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L +D+Y + L EK  +L  ++  F  P+LQ+F S   H+RMRAEF IWH+GDD YHIMF
Sbjct: 6   NLPVDRYAKLLEEKQQKLTALLSPFDAPDLQVFASPTQHFRMRAEFRIWHEGDDFYHIMF 65

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQ+K+R R+D F   S LIN +M  ++  ++ + +L  +LFQIDYL++QS Q IV+L+Y
Sbjct: 66  DQQSKQRYRVDNFPITSELINRMMTALLPLLKQQMVLHHRLFQIDYLSTQSQQIIVSLLY 125

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LD+ W+  A  LR  L  + + +Q++GRA+K KICL++DYVDE L V G+  IYRQ+
Sbjct: 126 HKALDENWQTAAQTLRSQLQQQGFNVQIVGRASKQKICLEQDYVDEILQVQGKDYIYRQV 185

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N  MLEW +  T+   GDLLELYCGNGNFS+ LA++F +VLA EIAKPS
Sbjct: 186 ENSFTQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRKVLATEIAKPS 245

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA++NIAAN V N++I+RMS++EFTQAM+  REFNRLK ID+ +Y   TIFVDPPR+G
Sbjct: 246 VAAAQFNIAANEVENLQIIRMSAEEFTQAMQGVREFNRLKGIDLKAYECNTIFVDPPRAG 305

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV LV
Sbjct: 306 LDAETVKLVQQYERILYISCNPHTLCDNLKTLSQTHRIEKAALFDQFPYTEHMEAGVWLV 365

Query: 364 RK 365
           RK
Sbjct: 366 RK 367


>gi|320154991|ref|YP_004187370.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|319930303|gb|ADV85167.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio vulnificus MO6-24/O]
          Length = 369

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 208/361 (57%), Positives = 267/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y+QQLAEKV RL  M   +Q P L++F S   HYRMRAEF +WH+G+++Y+IMF+Q+
Sbjct: 8   PQRYQQQLAEKVQRLTDMFAPYQAPELEVFESPEQHYRMRAEFRVWHEGEEMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDDAW E A  L+  L+   + + LIGRA K KI LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LDDAWIENAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVVEKLDVNGKPYVYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN + NV+I+RMS++EFT+AM  +REF RLKD  ID+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L ILS TH I R ALFDQFPYT HME GV+L R
Sbjct: 308 DVDTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|27364587|ref|NP_760115.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus CMCP6]
 gi|33301727|sp|Q8DD43|TRMA_VIBVU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|27360706|gb|AAO09642.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus CMCP6]
          Length = 369

 Score =  435 bits (1120), Expect = e-120,   Method: Composition-based stats.
 Identities = 208/361 (57%), Positives = 266/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y+QQLAEKV RL  M   +Q P L++F S   HYRMRAEF +WH+G+++Y+IMF+Q+
Sbjct: 8   PQRYQQQLAEKVQRLTDMFAPYQAPELEVFESPDQHYRMRAEFRVWHEGEEMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDDAW E A  L+  L+   + + LIGRA K KI LDRDYV E+L V G+   Y+Q+ENS
Sbjct: 128 LDDAWIENAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVVEKLDVNGKPYTYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN + NV+I+RMS++EFT+AM  +REF RLKD  ID+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L ILS TH I R ALFDQFPYT HME GV+L R
Sbjct: 308 DVDTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|37678313|ref|NP_932922.1| tRNA (uracil-5-)-methyltransferase [Vibrio vulnificus YJ016]
 gi|50401488|sp|Q7MQ79|TRMA_VIBVY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|37197052|dbj|BAC92893.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016]
          Length = 369

 Score =  435 bits (1119), Expect = e-120,   Method: Composition-based stats.
 Identities = 208/361 (57%), Positives = 267/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y+QQLAEKV RL  M   +Q P L++F S   HYRMRAEF +WH+G+++Y+IMF+Q+
Sbjct: 8   PQRYQQQLAEKVQRLTDMFAPYQAPELEVFESPEQHYRMRAEFRVWHEGEEMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLIDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDDAW E A  L+  L+   + + LIGRA K KI LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LDDAWIENAKALKQRLNDEGFDLNLIGRARKMKIVLDRDYVVEKLDVNGKPYVYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN + NV+I+RMS++EFT+AM  +REF RLKD  ID+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANKIENVQIIRMSAEEFTEAMEGKREFRRLKDNGIDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L ILS TH I R ALFDQFPYT HME GV+L R
Sbjct: 308 DVDTCKMVQGYERILYISCNPETLKENLDILSETHHITRFALFDQFPYTHHMEAGVMLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|251793563|ref|YP_003008292.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
 gi|262827621|sp|C6AQU6|TRMA_AGGAN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|247534959|gb|ACS98205.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter aphrophilus
           NJ8700]
          Length = 365

 Score =  435 bits (1118), Expect = e-120,   Method: Composition-based stats.
 Identities = 210/362 (58%), Positives = 269/362 (74%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L +  Y   LAEK ++L  ++  F  PNLQ+F S   H+RMRAEF IWH+GDD YHIMF
Sbjct: 3   NLPVTHYSALLAEKQEKLTALLAPFNAPNLQVFASPTQHFRMRAEFRIWHEGDDFYHIMF 62

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQ+K+R R+D F   S LIN +M  ++  ++ + +L  +LFQIDYL++QS   IV+L+Y
Sbjct: 63  DQQSKQRYRVDNFPIASELINRMMTALLPLLKQQTVLHHRLFQIDYLSTQSQHIIVSLLY 122

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LD+ W+  A  LR  L  + + +Q++GRA+K KICL++DYVDE L V G+  IYRQ+
Sbjct: 123 HKALDEDWQAAAQTLRSQLQQQGFNVQIVGRASKQKICLEQDYVDEILRVHGKDYIYRQV 182

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N  MLEW +  T+   GDLLELYCGNGNFS+ LA++F +VLA EIAKPS
Sbjct: 183 ENSFTQPNATVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRKVLATEIAKPS 242

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA++NIAAN +NN++I+RMS++EFTQAM+  REFNRLK ID+ +Y   TIFVDPPR+G
Sbjct: 243 VAAAQFNIAANQINNLQIIRMSAEEFTQAMQGVREFNRLKGIDLKAYECNTIFVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV LV
Sbjct: 303 LDADTVKLVQQYERILYISCNPHTLCDNLQTLSQTHRIEKAALFDQFPYTEHMEAGVWLV 362

Query: 364 RK 365
           RK
Sbjct: 363 RK 364


>gi|315178788|gb|ADT85702.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii NCTC 11218]
          Length = 376

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 207/361 (57%), Positives = 268/361 (74%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QL +KV RL  M  A+QVP L++F S   HYRMRAEF +WHDGDD+Y+IMF+ +
Sbjct: 15  PNHYQAQLDDKVTRLTDMFQAYQVPELEVFESPQQHYRMRAEFRVWHDGDDMYYIMFNPE 74

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++ +  LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 75  TREKYRVDQFPAASRLINDLMPLLMDAMKGDDTLRRKLFQVDFLSTLSGEVLVSLLYHRQ 134

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+AW   A +L+  L+   + + LIGRA K KI LDRD+V E+L V G+  IY+Q+ENS
Sbjct: 135 LDNAWTAAAKKLKQRLNDEGFNLNLIGRARKMKIVLDRDFVVEKLHVNGQPYIYQQVENS 194

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+
Sbjct: 195 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVES 254

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SY   TIFVDPPR+G+
Sbjct: 255 AQYNIAANAIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLKSYNCNTIFVDPPRAGM 314

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GVLL R
Sbjct: 315 DIDTCKMVQGYERILYISCNPETLKDNLDVLCETHRVTRFALFDQFPYTHHMEAGVLLER 374

Query: 365 K 365
           K
Sbjct: 375 K 375


>gi|261866761|ref|YP_003254683.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412093|gb|ACX81464.1| tRNA (uracil-5-)-methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 365

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 209/362 (57%), Positives = 270/362 (74%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L +++Y   LAEK  +L  +   F  P LQ+F S   H+RMRAEF IWH+ DD YHIMF
Sbjct: 3   NLPVERYSALLAEKQKKLTALFAPFNAPELQVFASPTQHFRMRAEFRIWHEQDDFYHIMF 62

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQ+K+R R+D F   + L+N +M  ++  ++ + +L  KLFQIDYL++QS Q IV+L+Y
Sbjct: 63  DQQSKQRYRVDCFPIANELVNRMMTALLPLLKQQIVLHHKLFQIDYLSTQSQQIIVSLLY 122

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LDDAW+  A  LR  LH + + +QLIGRA+K KICL++DYVDE L+V G+  IYRQ+
Sbjct: 123 HKTLDDAWQTAARTLRSQLHQQGFNVQLIGRASKQKICLEQDYVDEILSVHGKQYIYRQV 182

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSF QPNA +N  MLEW +  T+   GDLLELYCGNGNFS+ LA++F +VLA EIAKPS
Sbjct: 183 ENSFIQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSITLAQNFRQVLATEIAKPS 242

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA++NIAAN V N++I+RMS++EFTQAM+  R FNRLK ID+ +Y+  TIFVDPPR+G
Sbjct: 243 VAAAQFNIAANKVENLQIIRMSAEEFTQAMQGVRAFNRLKGIDLTAYQCNTIFVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD+ T+ +VQ Y  +LYISCNP +LC +L IL  TH IE+ ALFDQFPYT HME GV LV
Sbjct: 303 LDNETLKLVQQYERVLYISCNPHTLCDNLQILCQTHRIEKAALFDQFPYTEHMEAGVWLV 362

Query: 364 RK 365
           RK
Sbjct: 363 RK 364


>gi|261494651|ref|ZP_05991131.1| hypothetical protein COI_0439 [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261309616|gb|EEY10839.1| hypothetical protein COI_0439 [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 363

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/362 (54%), Positives = 264/362 (72%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL I+QY   LA+K + L  ++  F  P +++F S+P H+RMRAEF +WH+  +LYHIMF
Sbjct: 2   TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           + +TK R R+D F   S LIN +M  ++A I+   LL  KLFQIDYL++ S +  V+++Y
Sbjct: 62  NPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L++ W E A  L+  L  + +++Q+IGRANK KI LD DYV+E L V G+  +YRQ+
Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKMQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW    TK  +GDLLELYCGNGNFS+ LA +F +VLA EI+K S
Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V++A+YNI  N + N++I+RMS++EFTQAM   R F RLK ID+++Y   TIFVDPPR+G
Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ MVQAY  ILYISCNP++L  +L  LS TH IE+ ALFDQFPYT H+E GV L+
Sbjct: 302 LDQATLDMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361

Query: 364 RK 365
           RK
Sbjct: 362 RK 363


>gi|254362737|ref|ZP_04978821.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213]
 gi|153094362|gb|EDN75217.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213]
          Length = 363

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/362 (54%), Positives = 264/362 (72%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL I+QY   LA+K + L  ++  F  P +++F S+P H+RMRAEF +WH+  +LYHIMF
Sbjct: 2   TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           + +TK R R+D F   S LIN +M  ++A I+   LL  KLFQIDYL++ S +  V+++Y
Sbjct: 62  NPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L++ W E A  L+  L  + +++Q+IGRANK KI LD DYV+E L V G+  +YRQ+
Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW    TK  +GDLLELYCGNGNFS+ LA +F +VLA EI+K S
Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V++A+YNI  N + N++I+RMS++EFTQAM   R F RLK ID+++Y   TIFVDPPR+G
Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ MVQAY  ILYISCNP++L  +L  LS TH IE+ ALFDQFPYT H+E GV L+
Sbjct: 302 LDQATLNMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361

Query: 364 RK 365
           RK
Sbjct: 362 RK 363


>gi|262392929|ref|YP_003284783.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio sp. Ex25]
 gi|262336523|gb|ACY50318.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio sp. Ex25]
          Length = 369

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 199/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL  M   + +P L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLTDMFAPYNMPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+ W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS
Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPR+G+
Sbjct: 248 AQYNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFPYT HME GVLL R
Sbjct: 308 DADTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|330444843|ref|ZP_08308498.1| tRNA (uracil-5-)-methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489153|dbj|GAA02995.1| tRNA (uracil-5-)-methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 368

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/368 (53%), Positives = 270/368 (73%), Gaps = 3/368 (0%)

Query: 1   MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           M+ T+L    Y+QQL EK +R++ +   F  P L++F S   HYRMRAEF +WH+G+DL+
Sbjct: 1   MTSTILNTADYQQQLDEKAERIQNIFADFDTPELEVFASPAEHYRMRAEFRVWHEGEDLF 60

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           +IMF+Q+T+E+ R+D F   S LIN LM  ++  I+    LR KLFQ+D+L++ S + +V
Sbjct: 61  YIMFNQETREKYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +++YHR LDD W   A +L+  L+   +++ +IGRA K KI LD+DYV E+L +  RTL 
Sbjct: 121 SMLYHRQLDDEWTAEAKQLKQRLNDEGFKLNIIGRARKMKIVLDQDYVIEQLKINDRTLT 180

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q+ENSFTQPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+
Sbjct: 181 YKQVENSFTQPNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAQNFERVLATEL 240

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297
           AKPSV++A+YNIA N+++NV+I+RMS+++FT AM  +REF RLK+  +D+ SY   TIFV
Sbjct: 241 AKPSVDSAQYNIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKEQNVDLQSYNCNTIFV 300

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPRSG+D+ T  MVQ Y  I+YISCNP++L  +L IL  TH I R ALFDQFPYT HME
Sbjct: 301 DPPRSGMDEGTCRMVQGYDRIMYISCNPETLKENLDILGETHRITRFALFDQFPYTHHME 360

Query: 358 CGVLLVRK 365
            GVLL RK
Sbjct: 361 AGVLLERK 368


>gi|323498754|ref|ZP_08103741.1| tRNA (uracil-5-)-methyltransferase [Vibrio sinaloensis DSM 21326]
 gi|323316182|gb|EGA69206.1| tRNA (uracil-5-)-methyltransferase [Vibrio sinaloensis DSM 21326]
          Length = 368

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 200/361 (55%), Positives = 268/361 (74%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL +M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLTEMFSPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPTASRLINDLMPLLMDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDD W + A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ +Y+Q+ENS
Sbjct: 128 LDDEWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYVYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQDSSGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPR+G+
Sbjct: 248 AQYNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L ILS TH + R ALFDQFP+T HME GVLL R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKDNLDILSETHKVTRFALFDQFPFTHHMEAGVLLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|15603668|ref|NP_246742.1| tRNA (uracil-5-)-methyltransferase [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|20178160|sp|Q9CK32|TRMA_PASMU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|12722224|gb|AAK03887.1| TrmA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 365

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 204/365 (55%), Positives = 271/365 (74%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L I+QY+  LAEK  +L  ++  F  P L +F S   HYRMRAEF IWHD  D YH
Sbjct: 1   MQALLPIEQYDSLLAEKQKKLTALLAPFHAPALAVFPSPVQHYRMRAEFRIWHDKGDFYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ+T++R R+D F   S LIN +M  ++  ++   +L  KLFQIDYL++ S++ IV+
Sbjct: 61  IMFDQRTRQRYRVDCFPMASQLINQMMDTLLPLLKTNRVLHHKLFQIDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ LD+ W + A +L+ +L  + + +QLIGRA+K KICL++++VDE LTV G++ +Y
Sbjct: 121 LLYHKTLDEEWEQAAKQLKASLLQQGFDLQLIGRASKQKICLEQEFVDEVLTVHGKSYVY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIA
Sbjct: 181 RQVENSFTQPNAIVNQKMLEWAVDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA++NIA N + N++I+RMS++EFTQAM   REF+RLK ID+++Y   TIFVDPP
Sbjct: 241 KPSVAAAQFNIAENSIKNLQIIRMSAEEFTQAMNGVREFHRLKGIDLNAYECNTIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD+ TV +VQ Y  ILYISCNP +LC +L  L  TH IE+ ALFDQFPYT HME GV
Sbjct: 301 RAGLDEETVKLVQNYDRILYISCNPHTLCDNLQHLCQTHRIEKAALFDQFPYTEHMEAGV 360

Query: 361 LLVRK 365
            L+RK
Sbjct: 361 WLIRK 365


>gi|303250361|ref|ZP_07336560.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253670|ref|ZP_07535537.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650831|gb|EFL80988.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306858906|gb|EFM90952.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 368

 Score =  432 bits (1111), Expect = e-119,   Method: Composition-based stats.
 Identities = 205/367 (55%), Positives = 265/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58
            L I+QY   LAEK   L  ++  F  P L++F SE  H+RMRAEF +WHD      ++L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R+D F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++QLIGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQTEAAALKVRLEHQGFKVQLIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + TK   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTKNSTGDLLELYCGNGNFSIALAENFRQVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMSGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLQQLSQTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|261491879|ref|ZP_05988458.1| hypothetical protein COK_0317 [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261312534|gb|EEY13658.1| hypothetical protein COK_0317 [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 363

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/362 (54%), Positives = 263/362 (72%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL I+QY   LA+K + L  ++  F  P +++F S+P H+RMRAEF +WH+  +LYHIMF
Sbjct: 2   TLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMRAEFRVWHEEGELYHIMF 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           +  TK R R+D F   S LIN +M  ++A I+   LL  KLFQIDYL++ S +  V+++Y
Sbjct: 62  NPATKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKLFQIDYLSTLSGEIAVSMLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L++ W E A  L+  L  + +++Q+IGRANK KI LD DYV+E L V G+  +YRQ+
Sbjct: 122 HKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIALDCDYVEEILPVHGKNYVYRQV 181

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW    TK  +GDLLELYCGNGNFS+ LA +F +VLA EI+K S
Sbjct: 182 ENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGNGNFSIALAENFRKVLATEISKSS 241

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V++A+YNI  N + N++I+RMS++EFTQAM   R F RLK ID+++Y   TIFVDPPR+G
Sbjct: 242 VQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRAFYRLKGIDLNAYECNTIFVDPPRAG 301

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ MVQAY  ILYISCNP++L  +L  LS TH IE+ ALFDQFPYT H+E GV L+
Sbjct: 302 LDQATLNMVQAYERILYISCNPETLAENLQQLSQTHRIEKAALFDQFPYTHHIESGVWLI 361

Query: 364 RK 365
           RK
Sbjct: 362 RK 363


>gi|90581101|ref|ZP_01236901.1| tRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
 gi|90437797|gb|EAS62988.1| tRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
          Length = 368

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 198/358 (55%), Positives = 266/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+QQL EK +R++ + + F  P L++F S   HYRMRAEF +WH+G+DL++IMF+Q+T+E
Sbjct: 11  YQQQLDEKAERIQNIFVDFDTPELEVFASPAEHYRMRAEFRVWHEGEDLFYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  ++  I+    LR KLFQ+D+L++ S + +V+++YHR LDD
Sbjct: 71  KYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILVSMLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A +L+  L+   +++ LIGRA K KI LD+DYV E+L V  RTL Y+Q+ENSFTQ
Sbjct: 131 EWTAEAKQLKQRLNDEGFKLNLIGRARKMKIVLDQDYVIEQLKVHDRTLTYKQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSV++A+Y
Sbjct: 191 PNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAQNFERVLATELAKPSVDSAQY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIA N+++NV+I+RMS+++FT AM  +REF RLKD  +D+ SY   TIFVDPPRSG+D+ 
Sbjct: 251 NIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNVDLQSYNCNTIFVDPPRSGMDEG 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  I+YISCNP++L  +L IL  TH I R ALFDQFPYT HME GVLL RK
Sbjct: 311 TCRMVQGYERIMYISCNPETLKENLDILCETHKITRFALFDQFPYTHHMEAGVLLERK 368


>gi|260767615|ref|ZP_05876551.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii CIP 102972]
 gi|260617515|gb|EEX42698.1| tRNA (uracil-5-)-methyltransferase [Vibrio furnissii CIP 102972]
          Length = 376

 Score =  432 bits (1110), Expect = e-119,   Method: Composition-based stats.
 Identities = 206/360 (57%), Positives = 267/360 (74%), Gaps = 2/360 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QL +KV RL  M  A+QVP L++F S   HYRMRAEF +WHDGDD+Y+IMF+ +
Sbjct: 15  PNHYQAQLDDKVTRLTDMFQAYQVPELEVFESPQQHYRMRAEFRVWHDGDDMYYIMFNPE 74

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++ +  LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 75  TREKYRVDQFPAASRLINDLMPLLMDAMKGDDTLRRKLFQVDFLSTLSGEVLVSLLYHRQ 134

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDDAW   A +L+  L+   + + LIGRA K KI LDRD+V E+L V G+  IY+Q+ENS
Sbjct: 135 LDDAWTAAAKKLKQRLNDEGFNLNLIGRARKMKIVLDRDFVVEKLHVNGQPYIYQQVENS 194

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+
Sbjct: 195 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVES 254

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SY   TIFVDPPR+G+
Sbjct: 255 AQYNIAANAIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLKSYNCNTIFVDPPRAGM 314

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 315 DIDTCKMVQGYERILYISCNPETLKENLDVLCETHRVTRFALFDQFPYTHHMEAGVMLER 374


>gi|269968661|ref|ZP_06182658.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B]
 gi|269826748|gb|EEZ81085.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B]
          Length = 369

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 200/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+ W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS
Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPR+G+
Sbjct: 248 AQYNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFPYT HME GVLL R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|54310518|ref|YP_131538.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum SS9]
 gi|50401422|sp|Q6LLU2|TRMA_PHOPR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|46914961|emb|CAG21736.1| putative tRNA (uracil-5-)-methyltransferase [Photobacterium
           profundum SS9]
          Length = 368

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 199/366 (54%), Positives = 265/366 (72%), Gaps = 2/366 (0%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S  L    Y+QQL EK +R++ +   F+ P L++F S   HYRMRAEF +WH+G+DLY++
Sbjct: 3   STALNTAGYQQQLDEKAERIQNIFEDFETPELEVFASPAEHYRMRAEFRMWHEGEDLYYV 62

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           MF+Q+T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L
Sbjct: 63  MFNQETREKYRVDQFPAASRLINDLMPLLVEALKPSQTLRHKLFQVDFLSTLSGEILVSL 122

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YHR LD+ W     +L+  L+   + + +IGRA K KI  DRDYV E+L V  +TL Y+
Sbjct: 123 LYHRQLDEEWEVEIKKLKQCLNDEGFNLNIIGRARKMKIVADRDYVIEKLNVFDQTLTYK 182

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q+ENSFTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++F+RVLA E+AK
Sbjct: 183 QVENSFTQPNGEVAQKMLEWAVDCTQDSDGDLLELYCGNGNFSLALAKNFERVLATELAK 242

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
           PSVE+A+YNIA N+++NV+IVRMS+++FT AM  +REF RLK  ++D+ SY   TIFVDP
Sbjct: 243 PSVESAQYNIAVNNIDNVQIVRMSAEDFTDAMAGKREFRRLKAQNVDLQSYNCNTIFVDP 302

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PRSG+D+ T  MVQ Y  I+YISCNPD+L  +L ILS TH I R ALFDQFPYT HME G
Sbjct: 303 PRSGMDEGTCRMVQGYERIMYISCNPDTLKENLEILSQTHKITRFALFDQFPYTHHMEAG 362

Query: 360 VLLVRK 365
           VLL RK
Sbjct: 363 VLLERK 368


>gi|269961495|ref|ZP_06175858.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi 1DA3]
 gi|269833724|gb|EEZ87820.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi 1DA3]
          Length = 369

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 201/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+ W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS
Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFPYT HME GVLL R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|284009190|emb|CBA76252.1| tRNA (uracil-5)-methyltransferase [Arsenophonus nasoniae]
          Length = 367

 Score =  431 bits (1109), Expect = e-119,   Method: Composition-based stats.
 Identities = 215/366 (58%), Positives = 283/366 (77%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   L I QY  QL EK+  L  +ML +  P  +IFRS+  +YRMRAEF +WH+G DL+H
Sbjct: 1   MLNNLSITQYNSQLTEKIKYLNSIMLPYNAPKPEIFRSDFSYYRMRAEFRLWHEGQDLFH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ TK+R+RID       LIN +M+ ++  I+ + +LR KLFQ+DYL++ S++ IV+
Sbjct: 61  IMFDQTTKQRIRIDQLPIACKLINQMMVALIPLIKSKSVLRYKLFQVDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           LIYH+ L++ W E A +LR AL  + + IQLIGRA KTKI L++D++DE L +AG+++IY
Sbjct: 121 LIYHKKLNEEWIEQAKQLRIALINQGFDIQLIGRAAKTKIILEQDHIDEVLPIAGKSIIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQIENSFTQPNAGIN+ MLEW +  TK  +GDLLELYCGNGNFS+ LA++F+R+LA EIA
Sbjct: 181 RQIENSFTQPNAGINIKMLEWAIDCTKNAKGDLLELYCGNGNFSIALAQNFNRILATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA+YNI AN +NNVKI+RMS+++FTQA++ ER+F RL+ +D+ SY+  TI +DPP
Sbjct: 241 KPSVAAAQYNIEANKINNVKIIRMSAEDFTQAIQGERQFRRLEGVDLMSYKCNTILIDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R GLD+ TV +VQ YP ILYISCNP++LC +L+IL+ TH I RLALFDQFPYT H+ECGV
Sbjct: 301 RCGLDEKTVALVQKYPRILYISCNPNTLCHNLNILNKTHKIHRLALFDQFPYTHHIECGV 360

Query: 361 LLVRKP 366
           LL  K 
Sbjct: 361 LLENKD 366


>gi|293391475|ref|ZP_06635809.1| hypothetical protein D7S_1630 [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952009|gb|EFE02128.1| hypothetical protein D7S_1630 [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 365

 Score =  431 bits (1108), Expect = e-119,   Method: Composition-based stats.
 Identities = 207/362 (57%), Positives = 265/362 (73%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            L +++Y   LAEK  +L  +   F  P LQ+F S   H+RMRAEF IWH+ DD YHIMF
Sbjct: 3   NLPVERYAALLAEKQKKLTALFAPFDAPELQVFASPTQHFRMRAEFRIWHEQDDFYHIMF 62

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQ+K+R R+D F   S LIN +M  ++  ++ + +L  +LFQIDYL++QS Q IV+L+Y
Sbjct: 63  DQQSKQRYRVDRFPVASELINRMMTALLPLLKQQTVLHHRLFQIDYLSTQSQQIIVSLLY 122

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LDDAW+     LR  L  + + +QLIGRA+K KICL++DYVDE L V  +  +YRQ+
Sbjct: 123 HKTLDDAWQTATRTLRSQLQQQGFNVQLIGRASKQKICLEQDYVDEILNVHDKQYVYRQV 182

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N  MLEW +  T+   GDLLELYCGNGNFS+ LA++F  VLA EIAKPS
Sbjct: 183 ENSFTQPNAAVNSKMLEWAVDCTRNSHGDLLELYCGNGNFSIALAQNFRNVLATEIAKPS 242

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA++NIAAN V N++I+RMS++EFTQAM+  R FNRLK ID+ +Y+  TIFVDPPR+G
Sbjct: 243 VAAAQFNIAANKVENLQIIRMSAEEFTQAMQGVRAFNRLKGIDLSAYQCNTIFVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD+ T+ +VQ Y  ILYISCNP +LC +L  L  TH IE+ ALFDQFPYT HME GV LV
Sbjct: 303 LDEETLKLVQQYERILYISCNPHTLCDNLQTLCQTHRIEKAALFDQFPYTEHMEAGVWLV 362

Query: 364 RK 365
           RK
Sbjct: 363 RK 364


>gi|323495308|ref|ZP_08100388.1| tRNA (uracil-5-)-methyltransferase [Vibrio brasiliensis LMG 20546]
 gi|323310443|gb|EGA63627.1| tRNA (uracil-5-)-methyltransferase [Vibrio brasiliensis LMG 20546]
          Length = 369

 Score =  431 bits (1108), Expect = e-119,   Method: Composition-based stats.
 Identities = 199/360 (55%), Positives = 268/360 (74%), Gaps = 2/360 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKVDRL +M  ++ VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVDRLNEMFASYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPVASRLINDLMPLLIEAMKGSDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDD W + A  L+  L+   + + +IGRA K KI LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LDDEWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQPYVYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNI AN+++NV+I+R+S++EFTQA+  +REF RLKD  +D++SY   TIFVDPPR+G+
Sbjct: 248 AQYNIKANNIDNVQILRLSAEEFTQAIEGKREFRRLKDAGVDLNSYNCNTIFVDPPRAGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFP+T HME GVLL R
Sbjct: 308 DIDTCKMVQGYERIMYISCNPETLKENLDILCETHKVTRFALFDQFPFTHHMEAGVLLER 367


>gi|90414701|ref|ZP_01222672.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK]
 gi|90324243|gb|EAS40818.1| tRNA (uracil-5-)-methyltransferase [Photobacterium profundum 3TCK]
          Length = 368

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 198/366 (54%), Positives = 265/366 (72%), Gaps = 2/366 (0%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S  L    Y+QQL EK +R++ +   F+ P L++F S   HYRMRAEF +WH+G+DLY++
Sbjct: 3   STALNTAGYQQQLDEKAERIQNIFEDFETPELEVFASPAEHYRMRAEFRMWHEGEDLYYV 62

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           MF+Q+T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L
Sbjct: 63  MFNQETREKYRVDQFPAASRLINDLMPLLIEALKPNQALRHKLFQVDFLSTLSGEILVSL 122

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YHR LD+ W     +L+  L+   + + +IGRA K KI  DRDYV E+L V  + L Y+
Sbjct: 123 LYHRQLDEEWEIEIKKLKQCLNDEGFNLNIIGRARKMKIVADRDYVIEKLNVFDQPLTYK 182

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q+ENSFTQPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AK
Sbjct: 183 QVENSFTQPNGEVAQKMLEWAVDCTQDSEGDLLELYCGNGNFSLALAKNFERVLATELAK 242

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
           PSVE+A+YNIA N+++NV+IVRMS+++FT AM  +REF RLK  ++D+ SY   TIFVDP
Sbjct: 243 PSVESAQYNIAVNNIDNVQIVRMSAEDFTDAMAGKREFRRLKAQNVDLQSYNCNTIFVDP 302

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PRSG+D+ T  MVQ Y  I+YISCNPD+L  +L ILS TH I R ALFDQFPYT HME G
Sbjct: 303 PRSGMDEGTCRMVQGYERIMYISCNPDTLKENLEILSQTHKITRFALFDQFPYTHHMEAG 362

Query: 360 VLLVRK 365
           VLL RK
Sbjct: 363 VLLERK 368


>gi|52426422|ref|YP_089559.1| tRNA (uracil-5-)-methyltransferase [Mannheimia succiniciproducens
           MBEL55E]
 gi|115305869|sp|Q65PY6|TRMA_MANSM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|52308474|gb|AAU38974.1| TrmA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 364

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 204/361 (56%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I++Y + L +K  +L  ++  F  P L +F S   +YRMRAEF +WHD  DLYHIMF+
Sbjct: 4   LPIEKYSELLTKKQQKLTALLAPFNAPELSVFVSPVQNYRMRAEFRVWHDKGDLYHIMFN 63

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+R R+D F   SLLIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 64  QQTKQRYRVDCFPIASLLINRMMENLIPLLKEQEILTKKLFQIDYLSTLSNKIIVSLLYH 123

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W+  A  L+  L    + +Q++GRA K KICL+RDY DE L V GR  +YRQIE
Sbjct: 124 KTLTEEWQAAAQALKVRLEKLDFDVQIVGRATKQKICLERDYADEVLPVNGRNYVYRQIE 183

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  TK   GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 184 NSFTQPNAAVNCKMLEWAIGCTKNSSGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N ++N++I+RMS++EFTQAM   REFNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 244 AAAQFNIAENGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYECNTIFVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP++LC +L+ L+ TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 304 DPDTVKLVQNYDRILYISCNPNTLCNNLTELTKTHRIEKAALFDQFPYTDHMESGVWLIR 363

Query: 365 K 365
           K
Sbjct: 364 K 364


>gi|309973661|gb|ADO96862.1| tRNA m(5)U54 methyltransferase [Haemophilus influenzae R2846]
          Length = 377

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 205/365 (56%), Positives = 268/365 (73%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           +S  L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YH
Sbjct: 13  ISMQLPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYH 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+
Sbjct: 73  IMFDQATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVS 132

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +Y
Sbjct: 133 LLYHKTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVY 192

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIA
Sbjct: 193 RQVENSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIA 252

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPP
Sbjct: 253 KPSVAAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPP 312

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV
Sbjct: 313 RAGLDPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGV 372

Query: 361 LLVRK 365
            L+RK
Sbjct: 373 WLIRK 377


>gi|153835643|ref|ZP_01988310.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi HY01]
 gi|148867739|gb|EDL66997.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi HY01]
          Length = 369

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+ W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS
Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNPD+L  +L IL  TH + R ALFDQFPYT HME GVLL R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPDTLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|89074503|ref|ZP_01160980.1| tRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34]
 gi|89049791|gb|EAR55341.1| tRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34]
          Length = 368

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/368 (54%), Positives = 271/368 (73%), Gaps = 3/368 (0%)

Query: 1   MSGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           M+ T+L    Y+QQL EK +R++ +   F  P L++F S   HYRMRAEF +WH+G+DL+
Sbjct: 1   MTSTILNTADYQQQLDEKTERIQNICADFDTPELEVFASPAEHYRMRAEFRVWHEGEDLF 60

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           +IMF+Q+T+E+ R+D F   S LIN LM  ++  I+    LR KLFQ+D+L++ S + +V
Sbjct: 61  YIMFNQETREKYRVDQFPAASRLINDLMPMLVDAIKPIKALRHKLFQVDFLSTLSGEILV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +++YHR LDD W   A +L+  L+   +++ LIGRA K KI LD+DYV E+L V  RTL 
Sbjct: 121 SMLYHRQLDDEWTAEAKQLKQRLNDEGFKLNLIGRARKMKIVLDQDYVIEQLKVHDRTLT 180

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q+ENSFTQPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+
Sbjct: 181 YKQVENSFTQPNGEVAQKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATEL 240

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297
           AKPSV++A+YNIA N+++NV+I+RMS+++FT AM  +REF RLKD  +D+ SY   TIFV
Sbjct: 241 AKPSVDSAQYNIAVNNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNVDLQSYNCNTIFV 300

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPRSG+D+ T  MVQ Y  I+YISCNP++L  +L IL  TH I R ALFDQFPYT HME
Sbjct: 301 DPPRSGMDEGTCRMVQGYERIMYISCNPETLKENLDILCQTHKITRFALFDQFPYTHHME 360

Query: 358 CGVLLVRK 365
            GVLLVRK
Sbjct: 361 AGVLLVRK 368


>gi|213857560|ref|ZP_03384531.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 352

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 229/347 (65%), Positives = 275/347 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
           D  T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFP
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFP 352


>gi|156972610|ref|YP_001443517.1| tRNA (uracil-5-)-methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|166988122|sp|A7MXY6|TRMA_VIBHB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|156524204|gb|ABU69290.1| hypothetical protein VIBHAR_00262 [Vibrio harveyi ATCC BAA-1116]
          Length = 369

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 201/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+ W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS
Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFPYT HME GVLL R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|254292223|ref|ZP_04962988.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae AM-19226]
 gi|150421859|gb|EDN13841.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae AM-19226]
          Length = 369

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/362 (55%), Positives = 267/362 (73%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M   + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFADYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T   +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTHESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|261249984|ref|ZP_05942561.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio orientalis CIP
           102891]
 gi|260939488|gb|EEX95473.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio orientalis CIP
           102891]
          Length = 369

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 201/358 (56%), Positives = 267/358 (74%), Gaps = 2/358 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y++QLA+KVDRL +M  ++ VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+E
Sbjct: 11  YQEQLADKVDRLNEMFASYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETRE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR LDD
Sbjct: 71  KYRVDQFPAASRLINDLMPLLVDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W + A  L+  L+   + + +IGRA K KI LDRDYV E+L V G+  IY+Q+ENSFTQ
Sbjct: 131 EWTQNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGKPYIYQQVENSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+Y
Sbjct: 191 PNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDA 307
           NIAAN ++NV+I+R+S++EFT+A+  +REF RLKD  +D+HSY   TIFVDPPRSG+D  
Sbjct: 251 NIAANKIDNVQILRLSAEEFTEAIEGKREFRRLKDAGVDLHSYNCNTIFVDPPRSGMDID 310

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T  MVQ Y  I+YISCNP++L  +L +L  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 311 TCKMVQGYERIMYISCNPETLKENLDVLCETHNVTRFALFDQFPYTHHMEAGVLLERK 368


>gi|229520057|ref|ZP_04409485.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae TM 11079-80]
 gi|229342845|gb|EEO07835.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae TM 11079-80]
          Length = 369

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 203/362 (56%), Positives = 269/362 (74%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  IY+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYIYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|165977424|ref|YP_001653017.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|226706004|sp|B0BU06|TRMA_ACTPJ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|165877525|gb|ABY70573.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 368

 Score =  430 bits (1105), Expect = e-118,   Method: Composition-based stats.
 Identities = 201/367 (54%), Positives = 265/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58
            L I+QY   LAEK   L  ++  F  P L++F SE  H+RMRAEF +WHD      ++L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R+D F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q++GRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQILGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  L+ TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLADNLQQLTQTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|148981485|ref|ZP_01816425.1| tRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3]
 gi|145960840|gb|EDK26172.1| tRNA (uracil-5-)-methyltransferase [Vibrionales bacterium SWAT-3]
          Length = 369

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 199/361 (55%), Positives = 264/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEK  RL +M   + VP L+++ S   HYRMRAEF +WH+GDD+Y++MF+Q+
Sbjct: 8   PQRYQEQLAEKTKRLTEMFSEYNVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           TKE+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TKEKYRVDQFPAASRLINDLMPLLVDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W + A  L+  L+   + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENS
Sbjct: 128 LGEQWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+RMS+++FT AM  +REF RL+  +ID+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANKIDNVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L ILS TH I R ALFDQFPYT HME GV L R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLEILSETHDITRFALFDQFPYTHHMEAGVFLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|209696286|ref|YP_002264217.1| tRNA (uracil-5-)-methyltransferase [Aliivibrio salmonicida LFI1238]
 gi|226706003|sp|B6ENT4|TRMA_ALISL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|208010240|emb|CAQ80571.1| tRNA (uracil-5)-methyltransferase [Aliivibrio salmonicida LFI1238]
          Length = 368

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 204/361 (56%), Positives = 268/361 (74%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QL EK + L  M   F VP L++F S   +YRMRAEF IWH+GDD+Y++MFDQ+
Sbjct: 8   PENYQVQLDEKTEALSAMFSEFDVPELEVFSSPAENYRMRAEFRIWHEGDDMYYVMFDQK 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           TKE+ R+DYF+P + LIN LM  +   I+    LR K+FQ+D+L++ S + +V+++YHR 
Sbjct: 68  TKEKYRVDYFLPATRLINDLMPLLAEAIKGSKTLRYKMFQVDFLSTLSGEILVSMLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDDAW+E A  L+  L+ + + + LIGRA K KI LD+++V E+L V    L Y+Q+ENS
Sbjct: 128 LDDAWKEEAAVLKQQLNEKGFNLNLIGRARKMKIVLDQEFVIEKLKVNDDILTYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+
Sbjct: 188 FTQPNGVVAQKMLEWAVDCTQDSQGDLLELYCGNGNFSLALAKNFDRVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN+++NV+IVRMS+++FT AM  +REF RLKD  +D+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANNIDNVQIVRMSAEDFTDAMEGKREFRRLKDQNVDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ T  MVQ Y  I+YISCNPD+L  +L+ILS TH I R ALFDQFPYT HME G+ L R
Sbjct: 308 DEGTCKMVQGYERIMYISCNPDTLKENLAILSKTHNITRFALFDQFPYTHHMEAGIFLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|332991663|gb|AEF01718.1| tRNA (uracil-5-)-methyltransferase [Alteromonas sp. SN2]
          Length = 364

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 191/362 (52%), Positives = 258/362 (71%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T     Y+ QL EKVDRL  ++  F  P+L ++ S+P +YRMRAEF +WHDGDDLYHIMF
Sbjct: 3   TTTAKDYQAQLDEKVDRLGTLLTPFNAPSLSVYPSKPENYRMRAEFRVWHDGDDLYHIMF 62

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQ +KE+ R+D F P S  IN+ M +++  ++   LLR KLFQIDYLT  S + +++L+Y
Sbjct: 63  DQGSKEKYRVDTFPPASETINSAMQQLIEYLKPNELLRKKLFQIDYLTGLSGELVISLLY 122

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LDD W   A  LR  L  +   + +IGRA K K  +  D++ ERL + GR   ++ I
Sbjct: 123 HKPLDDEWEVQAELLRTFLATQFTAVSIIGRARKQKRIVGNDFIIERLPINGREFEFKHI 182

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N  M+EW L  +  + GDLLE+YCG GNFS+ LA HFD V+  EIAKPS
Sbjct: 183 ENSFTQPNAEVNCSMIEWSLECSAPLTGDLLEMYCGAGNFSMPLAVHFDNVIGTEIAKPS 242

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+AA+YNIAANH++NVKIVR+S++EFT+AM  ER F+RL+ I++  Y F T+ VDPPR+G
Sbjct: 243 VQAAQYNIAANHLDNVKIVRLSAEEFTEAMNGERTFSRLEGINLTEYNFTTVLVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD  ++ M+Q Y +I+YISCNP++L  +LS+L  TH +   ALFDQFP+T H+E GVLL 
Sbjct: 303 LDVDSLKMIQGYDNIIYISCNPETLAENLSLLCETHEVANAALFDQFPFTHHIEAGVLLT 362

Query: 364 RK 365
           +K
Sbjct: 363 KK 364


>gi|153826308|ref|ZP_01978975.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MZO-2]
 gi|149739976|gb|EDM54155.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MZO-2]
          Length = 369

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/362 (55%), Positives = 269/362 (74%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|254509266|ref|ZP_05121360.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16]
 gi|219547820|gb|EED24851.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16]
          Length = 368

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 198/361 (54%), Positives = 267/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL +M   +  P L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLTEMFAPYNAPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLVDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDD W + A  L+  L+   + + +IGRA K KI LDRDYV E+L V G+  IY+Q+ENS
Sbjct: 128 LDDEWTKNAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGKPYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSV +
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQDSQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVIS 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+R+S++EFT+A+  +REF RLKD  +D+ SY   TIFVDPPR+G+
Sbjct: 248 AQYNIAANKIDNVQILRLSAEEFTEAIEGKREFRRLKDAGVDLKSYNCNTIFVDPPRAGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +LS TH + R ALFDQFP+T HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLKENLDVLSETHNVTRFALFDQFPFTHHMEAGVMLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|307246918|ref|ZP_07528983.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307255900|ref|ZP_07537701.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307260353|ref|ZP_07542060.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852203|gb|EFM84443.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306861168|gb|EFM93161.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865604|gb|EFM97485.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 368

 Score =  429 bits (1103), Expect = e-118,   Method: Composition-based stats.
 Identities = 202/367 (55%), Positives = 266/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58
            L I+QY   LAEK   L  +++ F  P L++F SE  H+RMRAEF +WHD      ++L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRQVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLQQLSQTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|84394318|ref|ZP_00993041.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01]
 gi|84375048|gb|EAP91972.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01]
          Length = 369

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 199/361 (55%), Positives = 264/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEK +RL +M   + VP L+++ S   HYRMRAEF +WH+GDD+Y++MF+Q+
Sbjct: 8   PQRYQEQLAEKTERLTEMFSQYDVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           TKE+ R+D F   S LIN LM  +   ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TKEKYRVDQFPAASRLINDLMPLLTDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W + A  L+  L+   + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENS
Sbjct: 128 LGEQWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+RMS+++FT AM  +REF RL+  +ID+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANKIDNVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L ILS TH I R ALFDQFPYT HME GV L R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILSETHDITRFALFDQFPYTHHMEAGVFLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|229525047|ref|ZP_04414452.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae bv. albensis
           VL426]
 gi|229338628|gb|EEO03645.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae bv. albensis
           VL426]
          Length = 369

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 203/362 (56%), Positives = 270/362 (74%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNAG+   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAGVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|260771656|ref|ZP_05880576.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio metschnikovii CIP
           69.14]
 gi|260613433|gb|EEX38632.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio metschnikovii CIP
           69.14]
          Length = 369

 Score =  429 bits (1102), Expect = e-118,   Method: Composition-based stats.
 Identities = 204/361 (56%), Positives = 268/361 (74%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y  QLAEK+ RL +M   + VP L++F S   +YRMRAEF +WH+GD++Y++MF+  
Sbjct: 8   PEHYSAQLAEKITRLTEMFQPYHVPKLEVFESPKQYYRMRAEFRVWHEGDEMYYVMFNPT 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+LIYHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLIEAMQGNKTLRHKLFQVDFLSTLSGELLVSLIYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+AW   A +L+  L+   + + +IGRA K KI LDRDYV E+L V  +  +Y+Q+ENS
Sbjct: 128 LDEAWTSEAKQLKQRLNDEGFNLNVIGRARKMKIVLDRDYVVEKLHVNDKAYLYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESQGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAANH++NV+I+RMS+++FTQAM  +REFNRLK+  ID+ SYR  TIFVDPPR+G+
Sbjct: 248 AQYNIAANHIDNVQIIRMSAEDFTQAMEGKREFNRLKEAGIDLKSYRCNTIFVDPPRAGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L ILSTTH I R ALFDQFPYT HME GV+L R
Sbjct: 308 DVDTCKMVQGYERILYISCNPETLKENLDILSTTHNITRFALFDQFPYTHHMEAGVMLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|260774785|ref|ZP_05883687.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609210|gb|EEX35365.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 369

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 203/359 (56%), Positives = 267/359 (74%), Gaps = 2/359 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL +M   + VP L++F S   HYRMRAEF +WH+GDDLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLNEMFAPYHVPELEVFESPEQHYRMRAEFRVWHEGDDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLIDAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDD W + A  L+  L+   + + LIGRA K KI LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LDDEWTKNAKALKQRLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGQPYVYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T   QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+
Sbjct: 188 FTQPNGKVAEKMLEWAIDCTNESQGDLLELYCGNGNFSLALAQNFNRVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN+++NV+I+R+S++EFTQA+  +REF RLKD  +D+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANNIDNVQILRLSAEEFTQAIEGKREFRRLKDAGVDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQ Y  ILYISCNP++L  +L +LS TH I R ALFDQFPYT HME G+LL 
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLKDNLDVLSETHNITRFALFDQFPYTHHMEAGILLE 366


>gi|86148652|ref|ZP_01066933.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222]
 gi|218710898|ref|YP_002418519.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus LGP32]
 gi|254789082|sp|B7VM88|TRMA_VIBSL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|85833571|gb|EAQ51748.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222]
 gi|218323917|emb|CAV20278.1| tRNA (uracil-5-)-methyltransferase [Vibrio splendidus LGP32]
          Length = 369

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 199/361 (55%), Positives = 263/361 (72%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEK +RL +M   + VP L+++ S   HYRMRAEF +WH+GDD+Y++MF+Q+
Sbjct: 8   PQRYQEQLAEKTERLTEMFSEYNVPELEVYESPEQHYRMRAEFRVWHEGDDMYYVMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           TKE+ R+D F   S LIN LM  +   ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TKEKYRVDQFPAASRLINDLMPLLTDAMKDNHSLRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W + A  L+  L+   + + LIGRA K KI LDRDYV E+L V G + IY+Q+ENS
Sbjct: 128 LGEQWIQDAKALKQQLNDEGFNLNLIGRARKMKIVLDRDYVIEKLDVNGDSYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQDSKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVES 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN + NV+I+RMS+++FT AM  +REF RL+  +ID+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANKIENVQIIRMSAEDFTVAMEGKREFRRLQQANIDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L ILS TH I R ALFDQFPYT HME GV L R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILSETHDITRFALFDQFPYTHHMEAGVFLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|307262483|ref|ZP_07544128.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306867860|gb|EFM99691.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 368

 Score =  428 bits (1101), Expect = e-118,   Method: Composition-based stats.
 Identities = 201/367 (54%), Positives = 265/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58
            L I+QY   LAEK   L  ++  F  P L++F SE  H+RMRAEF +WHD      ++L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLLVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + TK   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTKNSTGDLLELYCGNGNFSIALAENFRQVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L+ L+ TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLAQLTRTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
            V L+RK
Sbjct: 362 SVWLIRK 368


>gi|307258085|ref|ZP_07539837.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306863448|gb|EFM95379.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 368

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58
            L I+QY   LAEK   L  +++ F  P L++F SE  H+RMRAEF +WHD      ++L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R+D F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVDQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L+ L+ TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLAENLAQLTRTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
            V L+RK
Sbjct: 362 SVWLIRK 368


>gi|113460452|ref|YP_718514.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 129PT]
 gi|112822495|gb|ABI24584.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 129PT]
          Length = 399

 Score =  428 bits (1100), Expect = e-118,   Method: Composition-based stats.
 Identities = 204/363 (56%), Positives = 269/363 (74%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY   LAEK  +L +++  F  P L +F SE  H+RMRAEF IWH+ DD YHIMFD
Sbjct: 37  LPIEQYSALLAEKQQKLTELLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 96

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+TK+R RID F   S LIN +M+ ++  ++   +L  +LFQIDYL++ S++ IV+L+YH
Sbjct: 97  QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 156

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L++ W + A +L+  L  + + +Q+IGRANK KICL +D+VDE L V  +  IYRQ+E
Sbjct: 157 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 216

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  TK  QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 217 NSFTQPNATVNCKMLEWAIDCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 276

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIAAN ++N+ I+RMS+++FTQAM   R FNRLK I++  Y+  TIFVDPPR+GL
Sbjct: 277 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRAGL 336

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D ATV +VQ Y  ILYISCNP +LC +L  L+ TH IE+ ALFDQFPYT HME GV L++
Sbjct: 337 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 396

Query: 365 KPS 367
           K +
Sbjct: 397 KSN 399


>gi|239994745|ref|ZP_04715269.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii ATCC
           27126]
          Length = 365

 Score =  427 bits (1099), Expect = e-117,   Method: Composition-based stats.
 Identities = 192/357 (53%), Positives = 264/357 (73%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y+ QL EKV+RL  ++  F  P+L +F S+P HYRMRAEF +WH+GDDL+HIMF+Q+TK
Sbjct: 8   RYQAQLDEKVERLTALLSPFNAPDLTVFPSQPTHYRMRAEFRVWHEGDDLFHIMFNQETK 67

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F P    IN  M  ++  +R    LR KLFQIDYL++ S + +++L+YHR LD
Sbjct: 68  EKYRVDSFPPACKAINDAMALLLKEVRPNEALRKKLFQIDYLSALSGELVISLLYHRQLD 127

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W+E A  L+  L A   ++ +IGRA K K+ +D D+V ERL V G+  I++ IENSFT
Sbjct: 128 EKWQEAAKELKAKLEAHFPKVNIIGRARKQKLIIDNDFVIERLPVNGKEFIFKHIENSFT 187

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N  M+EW L   K + GDLLE+YCG GNFSL LA HFD V+  EIAKPSV+AA+
Sbjct: 188 QPNAEVNCSMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 247

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NI  N +NNVKIVR++++EFTQAM+ ER F+RL+ ID+ +Y F T+ VDPPR+GLD+ +
Sbjct: 248 FNIEQNQLNNVKIVRLAAEEFTQAMKGERTFSRLEGIDLSAYNFTTVLVDPPRAGLDEDS 307

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK
Sbjct: 308 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 364


>gi|229845900|ref|ZP_04466012.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 7P49H1]
 gi|229810904|gb|EEP46621.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 7P49H1]
          Length = 363

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 204/361 (56%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S  IN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASTQINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC D+DYVDE L+V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFDVQIIGRASKQKICFDQDYVDEILSVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|91228523|ref|ZP_01262444.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01]
 gi|91187899|gb|EAS74210.1| tRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01]
          Length = 369

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 197/360 (54%), Positives = 265/360 (73%), Gaps = 2/360 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL  M   + +P L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLTDMFAPYNMPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLVEAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+ W E A  L+  L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENS
Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+R+S++EFTQA+  +REF RL+D  +D+ SY   TIFVDPPR+G+
Sbjct: 248 AQYNIAANKIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLESYNCNTIFVDPPRAGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L IL  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVMLER 367


>gi|59713043|ref|YP_205819.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri ES114]
 gi|197336423|ref|YP_002157222.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11]
 gi|75431447|sp|Q5E215|TRMA_VIBF1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226705995|sp|B5FCA6|TRMA_VIBFM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|59481144|gb|AAW86931.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri ES114]
 gi|197317913|gb|ACH67360.1| tRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11]
          Length = 368

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 199/361 (55%), Positives = 266/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QL EK + L  M   F VP L++F S   +YRMRAEF +WH+GD++Y++MF+Q+
Sbjct: 8   PENYQVQLDEKAEALSAMFSEFNVPELEVFSSPAENYRMRAEFRVWHEGDEMYYVMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           TKE+ R+DYF+P S LIN LM  +   ++    LR K+FQ+D+L++ S + +V+++YHR 
Sbjct: 68  TKEKYRVDYFLPASRLINDLMPLLTEAVKESKTLRYKMFQVDFLSTLSGEILVSMLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDDAW+E A  L+  L+   + + +IGRA K KI LD+++V E+L V    L Y+Q+ENS
Sbjct: 128 LDDAWKEEAKALKQRLNDEGFNLNIIGRARKMKIVLDQEFVIEKLKVNDDILTYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++FDRVLA E+AKPSV++
Sbjct: 188 FTQPNGIVAQKMLEWAVDCTQNSQGDLLELYCGNGNFSLALAKNFDRVLATELAKPSVDS 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN+++NV+I+RMS+++FT AM  +REF RLKD  ID+ SY   TIFVDPPRSG+
Sbjct: 248 AQYNIAANNIDNVQIIRMSAEDFTDAMEGKREFRRLKDQNIDLKSYNCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ T  MVQ Y  I+YISCNP++L  +L ILS TH I R ALFDQFPYT HME GV L R
Sbjct: 308 DEGTCKMVQGYERIMYISCNPETLKENLEILSQTHNITRFALFDQFPYTHHMEAGVFLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|262404889|ref|ZP_06081443.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC586]
 gi|262348973|gb|EEY98112.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC586]
          Length = 369

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 202/362 (55%), Positives = 270/362 (74%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKMVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DINTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|229527105|ref|ZP_04416499.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 12129(1)]
 gi|229335336|gb|EEO00819.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 12129(1)]
          Length = 369

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 202/362 (55%), Positives = 268/362 (74%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPKLEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T   +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTHESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|229508890|ref|ZP_04398380.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae B33]
 gi|229606702|ref|YP_002877350.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MJ-1236]
 gi|255743897|ref|ZP_05417852.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholera CIRS 101]
 gi|229354007|gb|EEO18940.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae B33]
 gi|229369357|gb|ACQ59780.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MJ-1236]
 gi|255738380|gb|EET93770.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholera CIRS 101]
          Length = 369

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 202/362 (55%), Positives = 268/362 (74%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWITVAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|15640185|ref|NP_229812.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591770|ref|ZP_01678974.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 2740-80]
 gi|147674711|ref|YP_001218267.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395]
 gi|153820136|ref|ZP_01972803.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae NCTC 8457]
 gi|227080389|ref|YP_002808940.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae M66-2]
 gi|229508429|ref|ZP_04397933.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae BX 330286]
 gi|254851540|ref|ZP_05240890.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MO10]
 gi|262167005|ref|ZP_06034723.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae RC27]
 gi|298501084|ref|ZP_07010884.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MAK 757]
 gi|20178172|sp|Q9KVJ0|TRMA_VIBCH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|172047522|sp|A5F4M4|TRMA_VIBC3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|254789081|sp|C3LPZ5|TRMA_VIBCM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|9654556|gb|AAF93331.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546367|gb|EAX56626.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 2740-80]
 gi|126509317|gb|EAZ71911.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae NCTC 8457]
 gi|146316594|gb|ABQ21133.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395]
 gi|227008277|gb|ACP04489.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae M66-2]
 gi|227011845|gb|ACP08055.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae O395]
 gi|229354702|gb|EEO19624.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae BX 330286]
 gi|254847245|gb|EET25659.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MO10]
 gi|262024589|gb|EEY43272.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae RC27]
 gi|297540118|gb|EFH76179.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae MAK 757]
          Length = 369

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 202/362 (55%), Positives = 268/362 (74%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|163803389|ref|ZP_02197264.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4]
 gi|159172793|gb|EDP57638.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4]
          Length = 369

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 196/361 (54%), Positives = 266/361 (73%), Gaps = 2/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y++QLAEKV+RL  M   ++VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8   PQRYQEQLAEKVERLNNMFAPYKVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLVDAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+ W E A  L+  L+   + + +IGRA K KI LDRD+V E+L V G++  Y+Q+ENS
Sbjct: 128 LDEQWIENARALKQRLNDEGFNLNIIGRARKMKIVLDRDFVIEKLDVNGQSYTYQQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSV +
Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A+YNIAAN ++NV+I+R+S++EFTQA+  +REF RL++  +D+ SY   TIFVDPPR+G+
Sbjct: 248 AQYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQEAGVDLKSYNCNTIFVDPPRAGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  I+YISCNP++L  +L +L  TH + R ALFDQFPYT HME GVLL R
Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDMLCETHKVTRFALFDQFPYTHHMEAGVLLER 367

Query: 365 K 365
           K
Sbjct: 368 K 368


>gi|261210143|ref|ZP_05924440.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC341]
 gi|260840683|gb|EEX67232.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. RC341]
          Length = 369

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 202/362 (55%), Positives = 266/362 (73%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  IY+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYIYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+   GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESNGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI--HSYRFKTIFVDPPRSGL 304
           A++NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +   SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVVLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP +L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPKTLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|148826507|ref|YP_001291260.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittEE]
 gi|166988117|sp|A5UDM6|TRMA_HAEIE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|148716667|gb|ABQ98877.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittEE]
          Length = 363

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 203/361 (56%), Positives = 264/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S  IN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASTQINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|307251253|ref|ZP_07533174.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856769|gb|EFM88904.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 368

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58
            L I++Y   LAEK   L  +++ F  P L++F SE  H+RMRAEF +WHD      ++L
Sbjct: 2   NLPIERYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|312884418|ref|ZP_07744123.1| tRNA (uracil-5-)-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367940|gb|EFP95487.1| tRNA (uracil-5-)-methyltransferase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 369

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 195/359 (54%), Positives = 264/359 (73%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QL++KV  L  +  +F  P L++F S   HYRMRAEF +WH+GDDLY++MF+QQT+
Sbjct: 10  HYQKQLSDKVSCLNDLFASFDTPELEVFESPKQHYRMRAEFRVWHEGDDLYYVMFNQQTR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM E++  +++   LR KLFQ+D+L++ S + +V+L+YHR LD
Sbjct: 70  EKYRVDQFPAASQLINDLMPELIDAMKVNDSLRHKLFQVDFLSTLSGEVLVSLLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W E A  L+  L  + + + +IGRA K K+ LDRDYV E+L V G+   Y+Q+ENSFT
Sbjct: 130 DEWTENAKALKQQLIDKGFNLNIIGRARKMKVVLDRDYVIEKLDVNGKAYTYQQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+
Sbjct: 190 QPNGKVAEKMLEWAIDCTQDSQGDLLELYCGNGNFSLALAQNFNRVLATELAKPSVESAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNI  N + NV+I+R+S++EFTQA+  +REF RLKD  +++ SY   TIFVDPPRSG+D 
Sbjct: 250 YNIQVNQIENVQILRLSAEEFTQAIEGKREFRRLKDAGVELDSYNCNTIFVDPPRSGMDI 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNP++L  +LS+LS TH I R ALFDQFPYT HME G++L ++
Sbjct: 310 DTCKMVQGYERIIYISCNPETLKDNLSLLSQTHKITRFALFDQFPYTHHMEAGIVLEKR 368


>gi|229844717|ref|ZP_04464856.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 6P18H1]
 gi|229812431|gb|EEP48121.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 6P18H1]
          Length = 363

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 202/361 (55%), Positives = 264/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+  D YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQSDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASTLINRMMQILLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EI+KPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEISKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGARAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|134035059|sp|Q0I1I7|TRMA_HAES1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 366

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 204/363 (56%), Positives = 269/363 (74%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY   LAEK  +L +++  F  P L +F SE  H+RMRAEF IWH+ DD YHIMFD
Sbjct: 4   LPIEQYSALLAEKQQKLTELLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 63

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+TK+R RID F   S LIN +M+ ++  ++   +L  +LFQIDYL++ S++ IV+L+YH
Sbjct: 64  QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 123

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L++ W + A +L+  L  + + +Q+IGRANK KICL +D+VDE L V  +  IYRQ+E
Sbjct: 124 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 183

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  TK  QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 184 NSFTQPNATVNCKMLEWAIDCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIAAN ++N+ I+RMS+++FTQAM   R FNRLK I++  Y+  TIFVDPPR+GL
Sbjct: 244 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D ATV +VQ Y  ILYISCNP +LC +L  L+ TH IE+ ALFDQFPYT HME GV L++
Sbjct: 304 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 363

Query: 365 KPS 367
           K +
Sbjct: 364 KSN 366


>gi|269103682|ref|ZP_06156379.1| tRNA (Uracil54-C5-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163580|gb|EEZ42076.1| tRNA (Uracil54-C5-)-methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 368

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 196/359 (54%), Positives = 261/359 (72%), Gaps = 2/359 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y+ QL EK  R++ +   F  P L+++ S   HYRMRAEF +WH+G+DLY+IMF+QQT+
Sbjct: 10  DYQHQLDEKAQRIQNIFADFDTPELEVYASPAEHYRMRAEFRVWHEGEDLYYIMFNQQTR 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L++ S + +V+++YHR LD
Sbjct: 70  EKYRVDQFPAASRLINDLMPLLIEAVKPHRSLRHKLFQVDFLSTLSGEILVSMLYHRQLD 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W   A  L+  L+   +++ +IGRA K K  LD+++V E+L V  RTL Y+Q+ENSFT
Sbjct: 130 EEWETLAKALKQQLNDEGFKLNIIGRARKQKKVLDQEFVIEKLNVFDRTLTYKQVENSFT 189

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F+RVLA E+AKPSVE+A+
Sbjct: 190 QPNGTVAQKMLEWAVDCTRDSQGDLLELYCGNGNFSLALAQNFERVLATELAKPSVESAQ 249

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDD 306
           YNIA N+++NV+I+RMS++EFT+AM   REF RLKD  ID+ SY   TIFVDPPRSG+D+
Sbjct: 250 YNIAVNNIDNVQIIRMSAEEFTEAMEGRREFRRLKDNNIDLQSYNCNTIFVDPPRSGMDE 309

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  MVQ Y  I+YISCNP++L  +L ILS TH I R ALFDQFPYT HME GV L RK
Sbjct: 310 GTCRMVQGYERIMYISCNPETLKENLDILSETHRITRFALFDQFPYTHHMEAGVFLERK 368


>gi|190151336|ref|YP_001969861.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303251754|ref|ZP_07337925.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249054|ref|ZP_07531062.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307264691|ref|ZP_07546271.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|226706005|sp|B3GZC6|TRMA_ACTP7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|189916467|gb|ACE62719.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302649184|gb|EFL79369.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854512|gb|EFM86707.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306870003|gb|EFN01767.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 368

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58
            L I++Y   LAEK   L  +++ F  P L++F SE  H+RMRAEF +WHD      ++L
Sbjct: 2   NLPIERYADLLAEKAKNLTALLVPFNPPELEVFESETSHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRQVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|126209433|ref|YP_001054658.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           L20]
 gi|166988114|sp|A3N3R7|TRMA_ACTP2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|126098225|gb|ABN75053.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 368

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 201/367 (54%), Positives = 264/367 (71%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58
            L I+QY   LAEK   L  ++  F  P L++F SE  H+RMRAEF +WHD      ++L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETGHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R  ++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYCVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGNFSIALAENFRKVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|117621352|ref|YP_858614.1| tRNA (uracil-5-)-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|134035054|sp|A0KQR3|TRMA_AERHH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|117562759|gb|ABK39707.1| tRNA (uracil-5-)-methyltransferase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 377

 Score =  425 bits (1094), Expect = e-117,   Method: Composition-based stats.
 Identities = 211/357 (59%), Positives = 270/357 (75%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y+ QL EK +RL  +   F +P L++  S   HYRMRAEF IWHDGDDLYH M+   TK
Sbjct: 19  DYQAQLDEKRERLCGLFADFTLPALEVHASPAEHYRMRAEFRIWHDGDDLYHCMYAPATK 78

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E +R+D F   S LIN LM  ++  +R  P+LR KLFQIDYL++QS Q  V+L+YHR L+
Sbjct: 79  EIIRVDQFPTASRLINQLMPVLLEGLRPHPVLRRKLFQIDYLSTQSGQICVSLLYHRKLE 138

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
             W++ A  L+  L A+ +++QLIGRA+K KICL  ++V ERLTV GR L+Y+Q+ENSFT
Sbjct: 139 SEWQQAAEALQADLRAKGFELQLIGRAHKQKICLGEEFVIERLTVQGRQLVYKQVENSFT 198

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA IN  ML W L  TKG +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A+
Sbjct: 199 QPNAAINEQMLGWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQ 258

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ +Y+  TIFVDPPR+GLDDAT
Sbjct: 259 FNIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLGAYQCNTIFVDPPRAGLDDAT 318

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           V +VQ Y +ILYISCNP++L  ++++L  TH I R ALFDQFP+T HME GV L RK
Sbjct: 319 VKLVQDYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLKRK 375


>gi|223041752|ref|ZP_03611945.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor 202]
 gi|223017436|gb|EEF15854.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor 202]
          Length = 369

 Score =  425 bits (1092), Expect = e-117,   Method: Composition-based stats.
 Identities = 199/366 (54%), Positives = 264/366 (72%), Gaps = 5/366 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-----Y 59
           L  +QY   LA+KV  L  ++  FQ P L++F S+P H+RMRAEF +WHD ++      Y
Sbjct: 3   LATEQYADLLAKKVANLTALLSPFQAPELEVFASKPQHFRMRAEFRVWHDKNEKGENELY 62

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           HIMFD +TK+R R+D F   + LIN +M  ++A I+   LL  KLFQIDYL++ S +  V
Sbjct: 63  HIMFDPETKQRYRVDQFPIANELINKMMKSLLAEIQGSELLTRKLFQIDYLSTLSGEIAV 122

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +L+YH+ L++ W E A  L+  L  + +++QLIGRA K KI LD DYV+E L + G+  +
Sbjct: 123 SLLYHKALNEEWVEQAQLLKQRLTEQGFRVQLIGRATKQKIALDHDYVEEVLPIHGKNYV 182

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ+ENSFTQPNA IN+ MLEW  + T+  QGDLLELYCGNGNFS+ LA +F +VLA EI
Sbjct: 183 YRQVENSFTQPNAEINIKMLEWARSCTQNSQGDLLELYCGNGNFSIALAENFRKVLATEI 242

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ SY   TIFVDP
Sbjct: 243 SKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYDCNTIFVDP 302

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD  T+ MVQ Y  ILYISCNP++L  +L  LS TH IER ALFDQFP+T H+E G
Sbjct: 303 PRAGLDPDTLNMVQDYERILYISCNPNTLAENLQQLSQTHRIERAALFDQFPFTHHIESG 362

Query: 360 VLLVRK 365
           V L+++
Sbjct: 363 VWLIKR 368


>gi|301169567|emb|CBW29168.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 10810]
          Length = 363

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 203/361 (56%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|254227154|ref|ZP_04920690.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae V51]
 gi|125620322|gb|EAZ48720.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae V51]
          Length = 369

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 201/360 (55%), Positives = 268/360 (74%), Gaps = 2/360 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWISAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQENKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367


>gi|16272789|ref|NP_439008.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae Rd KW20]
 gi|68249442|ref|YP_248554.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|260579939|ref|ZP_05847769.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae RdAW]
 gi|1174775|sp|P31812|TRMA_HAEIN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|81336130|sp|Q4QM53|TRMA_HAEI8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|1573862|gb|AAC22505.1| tRNA (uracil-5-)-methyltransferase (trmA) [Haemophilus influenzae
           Rd KW20]
 gi|68057641|gb|AAX87894.1| tRNA (Uracil-5-)-methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|260093223|gb|EEW77156.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae RdAW]
          Length = 363

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 203/361 (56%), Positives = 266/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME G+ L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|240948863|ref|ZP_04753219.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor NM305]
 gi|240296678|gb|EER47289.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus minor NM305]
          Length = 369

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 199/366 (54%), Positives = 264/366 (72%), Gaps = 5/366 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-----Y 59
           L  +QY   LA+KV  L  ++  FQ P L++F S+P H+RMRAEF +WHD ++      Y
Sbjct: 3   LATEQYADLLAKKVANLTALLSPFQAPELEVFASKPQHFRMRAEFRVWHDKNEKGENELY 62

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           HIMFD +TK+R R+D F   + LIN +M  ++A I+   LL  KLFQIDYL++ S +  V
Sbjct: 63  HIMFDPETKQRYRVDQFPIANELINKMMQSLLAEIQGNELLTRKLFQIDYLSTLSGEIAV 122

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +L+YH+ L++ W E A  L+  L  + ++IQLIGRA K KI LD DYV+E L + G+  +
Sbjct: 123 SLLYHKALNEEWVEQAKLLKHRLTEQGFRIQLIGRATKQKIALDYDYVEEVLPIHGKNYV 182

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ+ENSFTQPNA +N+ MLEW  + T+  QGDLLELYCGNGNFS+ LA +F +VLA EI
Sbjct: 183 YRQVENSFTQPNAEMNIKMLEWARSCTQNSQGDLLELYCGNGNFSIALAENFRKVLATEI 242

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ SY   TIFVDP
Sbjct: 243 SKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYDCNTIFVDP 302

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD  T+ MVQ Y  ILYISCNP++L  +L  LS TH IER ALFDQFP+T H+E G
Sbjct: 303 PRAGLDPDTLNMVQGYERILYISCNPNTLAENLQQLSQTHRIERAALFDQFPFTHHIESG 362

Query: 360 VLLVRK 365
           V L+++
Sbjct: 363 VWLIKR 368


>gi|170718062|ref|YP_001783531.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 2336]
 gi|189036040|sp|B0UVN9|TRMA_HAES2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|168826191|gb|ACA31562.1| tRNA (uracil-5-)-methyltransferase [Haemophilus somnus 2336]
          Length = 366

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 205/363 (56%), Positives = 268/363 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I+QY   LAEK  +L  ++  F  P L +F SE  H+RMRAEF IWH+ DD YHIMFD
Sbjct: 4   LPIEQYSALLAEKQQKLTALLAPFNSPPLDVFASETSHFRMRAEFRIWHEQDDFYHIMFD 63

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+TK+R RID F   S LIN +M+ ++  ++   +L  +LFQIDYL++ S++ IV+L+YH
Sbjct: 64  QKTKQRFRIDQFPIASQLINQMMLALLPLLKQHNILTHRLFQIDYLSTLSNKIIVSLLYH 123

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L++ W + A +L+  L  + + +Q+IGRANK KICL +D+VDE L V  +  IYRQ+E
Sbjct: 124 KTLNEEWLQAATQLKQQLIKQGFDVQIIGRANKQKICLQQDFVDEILPVKNQQYIYRQVE 183

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  TK  QGDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 184 NSFTQPNATVNCKMLEWAINCTKNSQGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 243

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIAAN ++N+ I+RMS+++FTQAM   R FNRLK I++  Y+  TIFVDPPRSGL
Sbjct: 244 SAAQFNIAANKIDNLHIIRMSAEDFTQAMNGVRAFNRLKGINLQDYQCNTIFVDPPRSGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D ATV +VQ Y  ILYISCNP +LC +L  L+ TH IE+ ALFDQFPYT HME GV L++
Sbjct: 304 DMATVKLVQNYERILYISCNPYTLCENLQELTKTHRIEKAALFDQFPYTEHMESGVWLIK 363

Query: 365 KPS 367
           K +
Sbjct: 364 KSN 366


>gi|262163703|ref|ZP_06031444.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM223]
 gi|262027919|gb|EEY46583.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM223]
          Length = 369

 Score =  424 bits (1091), Expect = e-117,   Method: Composition-based stats.
 Identities = 201/362 (55%), Positives = 269/362 (74%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++   +LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L++ W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LNEEWNTAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +++ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|330827816|ref|YP_004390768.1| tRNA (uracil-5-)-methyltransferase [Aeromonas veronii B565]
 gi|328802952|gb|AEB48151.1| tRNA (uracil-5-)-methyltransferase [Aeromonas veronii B565]
          Length = 377

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 211/357 (59%), Positives = 272/357 (76%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y+ QL EK  RL ++   F +P L++  S   +YRMRAEF IWH+GDDL+H M+   TK
Sbjct: 19  DYQAQLDEKRARLTELFAGFTLPALEVHSSPAEYYRMRAEFRIWHEGDDLFHCMYAPATK 78

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E ++ID+F   S LIN LM  ++  +R  P+LR KLFQIDYL++QS Q IV+L+YHR L+
Sbjct: 79  EIIKIDHFPTASRLINQLMPLLLEGLRPHPVLRRKLFQIDYLSTQSGQIIVSLLYHRKLE 138

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
             W++ A  L+  L A+ +++QLIGRA+K KICL  D+V E+L VAGR LIY+Q+ENSFT
Sbjct: 139 AEWQQAAEALQADLRAKGFELQLIGRAHKQKICLGDDFVIEQLNVAGRQLIYKQVENSFT 198

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA IN  ML W L  TKG +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A+
Sbjct: 199 QPNATINEQMLAWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQ 258

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ SY+  TIFVDPPR+GLDDAT
Sbjct: 259 FNIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLKSYQCNTIFVDPPRAGLDDAT 318

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           V +VQ Y +ILYISCNP++L  ++++L  TH I R ALFDQFP+T HME GV L RK
Sbjct: 319 VKLVQEYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLRRK 375


>gi|237807152|ref|YP_002891592.1| tRNA (uracil-5-)-methyltransferase [Tolumonas auensis DSM 9187]
 gi|259547838|sp|C4L9A7|TRMA_TOLAT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|237499413|gb|ACQ92006.1| tRNA (uracil-5-)-methyltransferase [Tolumonas auensis DSM 9187]
          Length = 367

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 211/357 (59%), Positives = 267/357 (74%), Gaps = 1/357 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQTK 68
           Y+QQL EK  RL Q++  FQ P  ++F S P HYRMRAEF IWH+G D+LY++MF+ +TK
Sbjct: 11  YQQQLHEKQQRLTQLLAPFQAPEPEVFASAPSHYRMRAEFRIWHEGVDELYYVMFNSETK 70

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           +R  +  F  GS LIN LM  ++  IR    L+ KLFQID+LT+ S +A+++L+YH+ L+
Sbjct: 71  QRYYVHEFPTGSQLINRLMPRLLELIRGNHTLKYKLFQIDFLTTLSGEALISLLYHKTLN 130

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +AW+  A  LR AL A   ++ ++GRA+K KI L+R+YV E+L V  RTL Y Q+ENSFT
Sbjct: 131 EAWQPAATELRQALRAEFGEVDVVGRAHKQKIVLEREYVLEQLQVGDRTLEYMQVENSFT 190

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNAG+N  ML W    T   QGDLLELYCGNGNFSL LA++F+RVLA EIAKPSV AA+
Sbjct: 191 QPNAGMNQQMLGWATDVTADCQGDLLELYCGNGNFSLALAKNFNRVLATEIAKPSVHAAQ 250

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NIA N ++NV+I+RMS++EFTQAM  EREFNRLK ID+ SY+  TI VDPPR+GLD AT
Sbjct: 251 HNIAVNKIDNVQILRMSAEEFTQAMNGEREFNRLKGIDLQSYQCNTILVDPPRAGLDPAT 310

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           V M+QAY  ILYISCNP++LC +L  L  TH I R ALFDQFP+T HME GV LVRK
Sbjct: 311 VAMIQAYEQILYISCNPETLCDNLKTLCQTHNIARCALFDQFPFTHHMESGVWLVRK 367


>gi|145297241|ref|YP_001140082.1| tRNA (uracil-5-)-methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|166988115|sp|A4SHG2|TRMA_AERS4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|142850013|gb|ABO88334.1| tRNA (uracil-5)-methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 377

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 211/357 (59%), Positives = 272/357 (76%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y+ QL EK +RL Q+   F  P L++  S   HYRMRAEF IWH+GDDL+H M+ Q TK
Sbjct: 19  DYQAQLDEKRERLTQLFAGFNPPALEVHASPAEHYRMRAEFRIWHEGDDLFHCMYAQATK 78

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E +R+D+F   SLLIN LM  ++A +R   +LR KLFQIDYL++QS Q IV+L+YHR L+
Sbjct: 79  EIIRVDHFPTASLLINQLMPVLLAGLRPHFVLRRKLFQIDYLSTQSGQIIVSLLYHRKLE 138

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
             W++ A  L+  L A+ + ++LIGRA+K KICL  D+V E+L VAGR L Y+Q+ENSFT
Sbjct: 139 AEWQQAAETLQADLQAQGFDLRLIGRAHKQKICLGDDFVIEQLNVAGRQLTYKQVENSFT 198

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA IN  ML W L  T+G +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV++A+
Sbjct: 199 QPNAAINEQMLGWALDVTRGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQ 258

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NIAAN V+N+ I+RMS++EFT AMR EREFNRLK +D+ SY+  TIFVDPPR+GLDDAT
Sbjct: 259 FNIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLKSYQCNTIFVDPPRAGLDDAT 318

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           V +VQ Y +ILYISCNP++L  ++++L  TH + R ALFDQFP+T HME GV L RK
Sbjct: 319 VKLVQEYDNILYISCNPETLQANMAVLGETHEVARFALFDQFPWTHHMEAGVYLKRK 375


>gi|329122854|ref|ZP_08251426.1| tRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC
           11116]
 gi|327472118|gb|EGF17556.1| tRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC
           11116]
          Length = 363

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 204/361 (56%), Positives = 266/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQVIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|262172910|ref|ZP_06040588.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus MB-451]
 gi|261893986|gb|EEY39972.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus MB-451]
          Length = 369

 Score =  424 bits (1090), Expect = e-116,   Method: Composition-based stats.
 Identities = 201/362 (55%), Positives = 269/362 (74%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++   +LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L++ W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LNEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +++ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVILER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|145630596|ref|ZP_01786376.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021]
 gi|144983986|gb|EDJ91428.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021]
          Length = 363

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 202/361 (55%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLKEQGFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME G+ L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|258622817|ref|ZP_05717834.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM573]
 gi|258584878|gb|EEW09610.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM573]
          Length = 369

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 201/362 (55%), Positives = 269/362 (74%), Gaps = 2/362 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++   +LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L++ W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LNEEWVTAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +++ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367

Query: 365 KP 366
           K 
Sbjct: 368 KK 369


>gi|260581665|ref|ZP_05849462.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae NT127]
 gi|260095258|gb|EEW79149.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae NT127]
          Length = 363

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 204/361 (56%), Positives = 266/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQGFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWTIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGARAFNRLKGIDLESYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDCILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|149192330|ref|ZP_01870537.1| tRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1]
 gi|148833841|gb|EDL50871.1| tRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1]
          Length = 369

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 196/363 (53%), Positives = 265/363 (73%), Gaps = 2/363 (0%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
              + Y+ QL EK  RL  MM  +  P L++F S   HYRMRAEF +WH+G+D+Y+IMF+
Sbjct: 6   FTPEGYQIQLEEKSQRLIDMMAPYSAPELEVFTSPEKHYRMRAEFRVWHEGEDMYYIMFN 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q+T+E+ R+D F   S LIN LM  +M  ++   +LR KLFQ+D+L++ S + +V+L+YH
Sbjct: 66  QETREKYRVDQFPAASRLINDLMPLLMDAMKGNDVLRKKLFQVDFLSTLSGEILVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDDAW+  A  L+  L+   +++ LIGRA K KI LD+DYV E L V G+   Y+Q+E
Sbjct: 126 RQLDDAWKAEAKALKQRLNDEGFKLNLIGRARKMKIVLDQDYVLETLHVNGQPYHYQQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPN  +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSV
Sbjct: 186 NSFTQPNGPVAQKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRS 302
           ++A++NIA N ++NV+I+RMS++EFT+AM  +REF RL  +++D+ SY   TIFVDPPR+
Sbjct: 246 DSAQFNIAENKIDNVQIIRMSAEEFTEAMEGKREFRRLQQQNVDLKSYNCNTIFVDPPRA 305

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T  MVQ Y  ILYISCNP++L  +L +LS THTI R ALFDQFP+T H+E GVLL
Sbjct: 306 GMDIDTCKMVQGYQRILYISCNPETLKDNLDVLSETHTITRFALFDQFPFTHHIEAGVLL 365

Query: 363 VRK 365
            RK
Sbjct: 366 ERK 368


>gi|157377468|ref|YP_001476068.1| tRNA (uracil-5-)-methyltransferase [Shewanella sediminis HAW-EB3]
 gi|189036048|sp|A8G1G7|TRMA_SHESH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157319842|gb|ABV38940.1| tRNA (uracil-5-)-methyltransferase [Shewanella sediminis HAW-EB3]
          Length = 365

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 195/363 (53%), Positives = 259/363 (71%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +  + Y+ QL EK  +L Q+   F  P L++F SEP HYRMRAEF IWHDG+D+Y+ M
Sbjct: 4   AAMDPNTYDAQLEEKRIKLEQIFTDFDTPKLEVFSSEPAHYRMRAEFRIWHDGEDMYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+    ++R D F+P S LIN +M  +M  +R  P LR +LFQID+L++ S + +V+L+
Sbjct: 64  FDKALDSKVRCDQFLPASELINKVMPALMEELRPNPTLRHRLFQIDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD  W   A  L++ L A  + I +IGRA K K+ +D+D+V E LTV    L Y Q
Sbjct: 124 YHKQLDAQWEIEAKALKEKLAA-TFNINIIGRARKQKLIIDKDFVIESLTVNNEQLQYHQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPN  ++V MLEW +  TK  QGDLLELYCGNGNFS+ LA++FDRVLA E+AKP
Sbjct: 183 IENSFTQPNGKVSVKMLEWAIDVTKNSQGDLLELYCGNGNFSIALAQNFDRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SVE+A+YNI  N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVESAQYNIKINKIDNLQIIRMSAEDFTDAMAKKRTFRRLEGIDLDSYNCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  TV +VQ Y  I+YISCNP++L  +L+ LS TH I R ALFDQFPYT HME GV L
Sbjct: 303 GMDPDTVKLVQGYDRIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFL 362

Query: 363 VRK 365
            R+
Sbjct: 363 ERR 365


>gi|145632206|ref|ZP_01787941.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 3655]
 gi|145634738|ref|ZP_01790446.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittAA]
 gi|144987113|gb|EDJ93643.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 3655]
 gi|145267904|gb|EDK07900.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittAA]
          Length = 363

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 202/361 (55%), Positives = 263/361 (72%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+  D YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQSDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASTLINRMMQILLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|145636589|ref|ZP_01792256.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH]
 gi|145270115|gb|EDK10051.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittHH]
          Length = 363

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 202/361 (55%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLAEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME G+ L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|152978112|ref|YP_001343741.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus succinogenes
           130Z]
 gi|171472956|sp|A6VLF9|TRMA_ACTSZ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|150839835|gb|ABR73806.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus succinogenes
           130Z]
          Length = 369

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 207/366 (56%), Positives = 268/366 (73%), Gaps = 5/366 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDLY 59
           L I++Y++ LAEK  +L  ++  F  P L +F S   H+RMRAEF +WHD     G +LY
Sbjct: 4   LPIEKYDELLAEKCRKLTALLAPFDAPALTVFPSPTQHFRMRAEFRLWHDYSENRGGNLY 63

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           HIMFD+ TK+R R+D F   S LIN +M  ++  ++ + +L  KLFQIDYL++ S+Q IV
Sbjct: 64  HIMFDKTTKQRYRVDQFPVASQLINRMMATILPLLKEQDVLSRKLFQIDYLSTLSEQIIV 123

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +L+YH+ L D W+E A  L+  L    + +Q+IGRA K KICLD+D+VDE L+V  +  +
Sbjct: 124 SLLYHKTLTDEWQEAAQALKVRLRNLGFSVQIIGRATKQKICLDQDFVDEELSVGDKKYV 183

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ+ENSFTQPNA +N  MLEW +  T+  QGDLLELYCGNGNFS+ LA++F +VLA EI
Sbjct: 184 YRQVENSFTQPNAALNCKMLEWAIDCTRDSQGDLLELYCGNGNFSIALAQNFRKVLATEI 243

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           AKPSV AA++NIAAN V+N++I+RMS++EFTQA+   R FNRLK ID+ +Y   TIFVDP
Sbjct: 244 AKPSVAAAQFNIAANQVDNLQIIRMSAEEFTQAVNGVRAFNRLKGIDLQAYECHTIFVDP 303

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD  TV +VQ Y  ILYISCNP +LC +L ILS TH IER ALFDQFPYT HME G
Sbjct: 304 PRAGLDSDTVKLVQKYDRILYISCNPQTLCENLQILSQTHRIERAALFDQFPYTEHMEAG 363

Query: 360 VLLVRK 365
           V L+RK
Sbjct: 364 VWLMRK 369


>gi|127511072|ref|YP_001092269.1| tRNA (uracil-5-)-methyltransferase [Shewanella loihica PV-4]
 gi|171855240|sp|A3Q962|TRMA_SHELP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|126636367|gb|ABO22010.1| tRNA (uracil-5-)-methyltransferase [Shewanella loihica PV-4]
          Length = 365

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 191/362 (52%), Positives = 270/362 (74%), Gaps = 1/362 (0%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            +   QY+ QL  K  +L Q+ + F+ P L++F S+  HYRMRAEF +WH+G+DLY+ MF
Sbjct: 5   AMDPQQYDAQLDVKRQKLAQLFVDFETPELEVFASQKAHYRMRAEFRVWHEGEDLYYYMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           D+   +++R + F+P S LIN +M E+MA +R  P+LR KLFQ+D+L++ S + +V+L+Y
Sbjct: 65  DKAQNQKIRCEQFLPASQLINDMMPELMAALRPNPVLRHKLFQVDFLSTLSGEILVSLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LD  W+E A  L++AL + K+++ +IGRA K K+ +DRD+V E L V G+ L Y+Q+
Sbjct: 125 HKQLDAQWQEEAQALKEALSS-KFKVDIIGRARKQKLVMDRDFVIESLPVNGKQLTYKQV 183

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPN  + + MLEW +  T+   GDLLELYCGNGNFS+ LA++F+RVLA E+AKPS
Sbjct: 184 ENSFTQPNGEVAIKMLEWAIDITRDSSGDLLELYCGNGNFSIALAQNFNRVLATELAKPS 243

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V++A+YNI AN ++N++I+RMS+++FT A+ ++R F RL+ +D+ SY   TIFVDPPR+G
Sbjct: 244 VDSAQYNIEANQIDNLQIIRMSAEDFTDALAKKRSFRRLEGVDLDSYDCNTIFVDPPRAG 303

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD T+ MVQ Y  ILYISCNP++L  +L +L  TH I R ALFDQFPYT HME GVLL 
Sbjct: 304 LDDNTLSMVQGYERILYISCNPNTLLDNLKVLDKTHKITRFALFDQFPYTDHMESGVLLE 363

Query: 364 RK 365
           R+
Sbjct: 364 RR 365


>gi|322515262|ref|ZP_08068260.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
 gi|322118767|gb|EFX90973.1| tRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
          Length = 368

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 199/367 (54%), Positives = 263/367 (71%), Gaps = 5/367 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58
            L I+QY   LA+K + L  +++ F  P L++F+SE  H+RMRAEF +WHD      ++L
Sbjct: 2   NLPIEQYSDLLAKKAENLTALLVPFNPPALEVFQSETSHFRMRAEFRVWHDTNEAGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R R+D F   + LIN +M  ++  I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYRVDQFPIANHLINNMMSTLLTEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L    + +Q+IGRA K KI L+RDYV+E L V G  L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKKRLENHGFNVQIIGRATKQKIALERDYVEEVLPVDGHNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNGNFS+ LA +F +VLA E
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTQNSTGDLLELYCGNGNFSIALAENFRQVLATE 241

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV +A+YNI  N +NN++I+RMS++EFTQAM   REFNRLK ID+ +Y   TIFVD
Sbjct: 242 ISKSSVHSAQYNIEQNRINNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNTIFVD 301

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ MVQAY  ILYISCNP +L  +L  L+ TH IER ALFDQFPYT H+E 
Sbjct: 302 PPRAGLDQDTLNMVQAYERILYISCNPHTLADNLQQLTQTHRIERAALFDQFPYTHHVES 361

Query: 359 GVLLVRK 365
           GV L+RK
Sbjct: 362 GVWLIRK 368


>gi|332142722|ref|YP_004428460.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|332142856|ref|YP_004428594.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552744|gb|AEA99462.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552878|gb|AEA99596.1| tRNA (uracil-5-)-methyltransferase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 365

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 189/357 (52%), Positives = 258/357 (72%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y+ QL EKVDRL  ++  F  P   ++ S+P HYRMRAEF +WH+GDDL+HIMFDQ+TK
Sbjct: 8   RYQAQLDEKVDRLSALLSPFNAPKTSVYPSQPTHYRMRAEFRVWHEGDDLFHIMFDQETK 67

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F P    IN  M +++  IR   +LR KLFQIDYL++ S + +++L+YHR LD
Sbjct: 68  EKYRVDSFPPACKTINDAMEKLLNEIRPNEILRKKLFQIDYLSALSGELVISLLYHRQLD 127

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W   A  L+  L     ++ +IGRA K K  +D D+V ERL V G   +++ IENSFT
Sbjct: 128 DEWEAAAKSLKSTLETHFPKVNIIGRARKQKRIIDNDFVIERLPVKGNEFVFKHIENSFT 187

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N  M+EW L   K + GDLLE+YCG GNFSL LA HFD V+  EIAKPSV+AA+
Sbjct: 188 QPNAEVNCKMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 247

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NI  N ++NVKIVR++++EFTQAM+ +R F+RL+ ID+  Y F T+ VDPPR+GLD+ +
Sbjct: 248 FNIEQNRLHNVKIVRLAAEEFTQAMKGKRTFSRLEGIDLSEYNFTTVLVDPPRAGLDEDS 307

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK
Sbjct: 308 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 364


>gi|262827630|sp|B4RYR7|TRMA_ALTMD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 369

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 189/357 (52%), Positives = 258/357 (72%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +Y+ QL EKVDRL  ++  F  P   ++ S+P HYRMRAEF +WH+GDDL+HIMFDQ+TK
Sbjct: 12  RYQAQLDEKVDRLSALLSPFNAPKTSVYPSQPTHYRMRAEFRVWHEGDDLFHIMFDQETK 71

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E+ R+D F P    IN  M +++  IR   +LR KLFQIDYL++ S + +++L+YHR LD
Sbjct: 72  EKYRVDSFPPACKTINDAMEKLLNEIRPNEILRKKLFQIDYLSALSGELVISLLYHRQLD 131

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W   A  L+  L     ++ +IGRA K K  +D D+V ERL V G   +++ IENSFT
Sbjct: 132 DEWEAAAKSLKSTLETHFPKVNIIGRARKQKRIIDNDFVIERLPVKGNEFVFKHIENSFT 191

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N  M+EW L   K + GDLLE+YCG GNFSL LA HFD V+  EIAKPSV+AA+
Sbjct: 192 QPNAEVNCKMIEWALDCVKPLSGDLLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQAAQ 251

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NI  N ++NVKIVR++++EFTQAM+ +R F+RL+ ID+  Y F T+ VDPPR+GLD+ +
Sbjct: 252 FNIEQNRLHNVKIVRLAAEEFTQAMKGKRTFSRLEGIDLSEYNFTTVLVDPPRAGLDEDS 311

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + M+Q Y +I+YISCNP++L ++L +LS TH + + ALFDQFP+T H+E GVLL RK
Sbjct: 312 LRMIQDYDNIVYISCNPETLAQNLELLSETHDVAQSALFDQFPFTHHIEAGVLLTRK 368


>gi|145638350|ref|ZP_01793960.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittII]
 gi|145272679|gb|EDK12586.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae PittII]
 gi|309751491|gb|ADO81475.1| tRNA m(5)U54 methyltransferase [Haemophilus influenzae R2866]
          Length = 363

 Score =  422 bits (1085), Expect = e-116,   Method: Composition-based stats.
 Identities = 202/361 (55%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLKRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME G+ L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|145628253|ref|ZP_01784054.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21]
 gi|144980028|gb|EDJ89687.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.1-21]
          Length = 363

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 202/361 (55%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPISQYNELLQKKLEKLTALLHPFNAPDIQVFNSPTSHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLKRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME G+ L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGLWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|297581790|ref|ZP_06943711.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC385]
 gi|297533884|gb|EFH72724.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC385]
          Length = 369

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 201/360 (55%), Positives = 267/360 (74%), Gaps = 2/360 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPY  HME GVLL R
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYAHHMEAGVLLER 367


>gi|319897658|ref|YP_004135855.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3031]
 gi|317433164|emb|CBY81538.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3031]
          Length = 363

 Score =  421 bits (1083), Expect = e-116,   Method: Composition-based stats.
 Identities = 203/361 (56%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTNHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHRIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|88861402|ref|ZP_01136031.1| tRNA (Uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) (RUMT)
           [Pseudoalteromonas tunicata D2]
 gi|88816577|gb|EAR26403.1| tRNA (Uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) (RUMT)
           [Pseudoalteromonas tunicata D2]
          Length = 365

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 194/356 (54%), Positives = 263/356 (73%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YEQQL EK   +      F V +L++F SE  HYR RAEF +WHDG+DL+HIMFDQQ+KE
Sbjct: 11  YEQQLNEKKHTIAAQFARFGVNDLEVFASEEKHYRQRAEFRVWHDGEDLFHIMFDQQSKE 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R++ F P + LI ALM  ++A ++ + +LR KLFQIDYL++ S + +V+++YH+ LDD
Sbjct: 71  KIRVEQFDPAAPLIFALMPRLIAELKTKEVLRRKLFQIDYLSTLSGEILVSMLYHKALDD 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W      L++ L    + I  IGRA K KI L ++YV E+LTVAG+ L+Y+Q+ENSFTQ
Sbjct: 131 EWLTAIKELKNKLSGE-FNIDFIGRARKQKIALGKEYVVEKLTVAGKQLVYQQVENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +N  MLEW L  ++ +  DLLELYCGNGNFS+ LA  F+RVLA EI+K SV +A++
Sbjct: 190 PNAKVNQKMLEWALDISQNLSNDLLELYCGNGNFSIALAPAFNRVLATEISKSSVASAQF 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NIA N + N+ I+RMSS+EFT+AM+ E+EF+RLK ID+ SY  ++I VDPPR+GLD+ T 
Sbjct: 250 NIAENKITNLDIIRMSSEEFTEAMKGEKEFSRLKGIDLKSYNCQSILVDPPRAGLDEGTT 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y +I+YISCNP +L RDL +L+ TH +ER A+FDQFPYT H+E GV L RK
Sbjct: 310 RLVQNYDNIIYISCNPQTLERDLEVLTQTHKVERFAIFDQFPYTHHIESGVFLTRK 365


>gi|153831375|ref|ZP_01984042.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 623-39]
 gi|148873143|gb|EDL71278.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae 623-39]
          Length = 355

 Score =  420 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 200/355 (56%), Positives = 265/355 (74%), Gaps = 2/355 (0%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           LA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+T+E+ R+
Sbjct: 1   LADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQETREKYRV 60

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L + W  
Sbjct: 61  DQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWIT 120

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
            A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENSFTQPNA 
Sbjct: 121 AAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENSFTQPNAK 180

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++NIAA
Sbjct: 181 VAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAA 240

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGM 311
           N + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  T  M
Sbjct: 241 NQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKM 300

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           VQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK 
Sbjct: 301 VQGYERILYISCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERKK 355


>gi|120600466|ref|YP_965040.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. W3-18-1]
 gi|262827710|sp|A1RP91|TRMA_SHESW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|120560559|gb|ABM26486.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. W3-18-1]
          Length = 365

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 193/363 (53%), Positives = 264/363 (72%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M
Sbjct: 4   AAMDPQTYDAQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+   E++R D ++P S+LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+
Sbjct: 64  FDKVLNEKVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDD WR  A  L+  L ++ + + +IGRA K KI LD+D+V E L V  +T +Y+Q
Sbjct: 124 YHRQLDDQWRTNAAALKAKLSSQ-FNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA + V MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SVEAA+YNI AN + N++I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVEAAQYNIEANGIKNLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T+ +VQ Y  ILYISCNPD+L  +L  L  TH + + ALFDQFPYT HME GVLL
Sbjct: 303 GIDPDTLALVQGYERILYISCNPDTLKDNLEQLYKTHRVTQFALFDQFPYTDHMETGVLL 362

Query: 363 VRK 365
            R+
Sbjct: 363 ERR 365


>gi|258626050|ref|ZP_05720905.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM603]
 gi|258581670|gb|EEW06564.1| tRNA (uracil-5-)-methyltransferase [Vibrio mimicus VM603]
          Length = 369

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 200/359 (55%), Positives = 267/359 (74%), Gaps = 2/359 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVNYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++   +LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSHILRHKLFQVDFLSTLSGEVLVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L++ W   A  L+  L+   + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+ENS
Sbjct: 128 LNEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQDSNGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN ++NV+I+RMS++EFTQAM  +REFNRLKD  +++ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIDNVQIIRMSAEEFTQAMEGKREFNRLKDAGVNLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D  T  MVQ Y  ILYISCNP++L  +L +L  TH + R ALFDQFPYT HME GVLL 
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVLLE 366


>gi|304412674|ref|ZP_07394278.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS183]
 gi|307307284|ref|ZP_07587021.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica BA175]
 gi|304349018|gb|EFM13432.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS183]
 gi|306910339|gb|EFN40771.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica BA175]
 gi|315265533|gb|ADT92386.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS678]
          Length = 383

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 192/363 (52%), Positives = 266/363 (73%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M
Sbjct: 22  AAMDPQTYDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYM 81

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+   E++R D ++P S+LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+
Sbjct: 82  FDKVLNEKVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 141

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDD WR  A  L+  L ++ + + +IGRA K KI LD+D+V E L V  +T +Y+Q
Sbjct: 142 YHRQLDDQWRADATALKAKLSSQ-FNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 200

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA ++V MLEW + AT+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 201 IENSFTQPNAKVSVKMLEWAIDATQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 260

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV+AA+YNI  N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 261 SVDAAQYNIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 320

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T+ +VQ Y  ILYISCNP++L  +L  L+ TH + R ALFDQFPYT HME GVLL
Sbjct: 321 GIDPDTLALVQGYERILYISCNPETLKDNLQQLNETHKVTRFALFDQFPYTDHMETGVLL 380

Query: 363 VRK 365
            R+
Sbjct: 381 ERR 383


>gi|170729029|ref|YP_001763055.1| tRNA (uracil-5-)-methyltransferase [Shewanella woodyi ATCC 51908]
 gi|226705993|sp|B1KN03|TRMA_SHEWM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|169814376|gb|ACA88960.1| tRNA (uracil-5-)-methyltransferase [Shewanella woodyi ATCC 51908]
          Length = 365

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 194/363 (53%), Positives = 259/363 (71%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +  + Y+ QL EK  +L  +   F  PNL++F SE  HYRMRAEF IWHDG+D+Y+ M
Sbjct: 4   AAMDPNTYDAQLEEKRIKLENIFTDFDTPNLEVFSSEQAHYRMRAEFRIWHDGEDMYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+    ++R D F+P S LIN +M  ++A ++  PLLR +LFQID+L++ S + +V+L+
Sbjct: 64  FDKALNSKVRCDQFLPASKLINEMMPALIAELKPNPLLRHRLFQIDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W   A  L++ L A K+ + +IGRA K K+  D+D+V E L V G  L Y Q
Sbjct: 124 YHKQLDEQWETEAKSLKERL-ASKFNVNIIGRARKQKLIFDKDFVVESLQVNGEQLQYHQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++FDRVLA E+AKP
Sbjct: 183 IENSFTQPNGKVSVKMLEWAIDVTKNSSGDLLELYCGNGNFSIALAQNFDRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SVE+A+YNI  N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVESAQYNIKINKIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  TV +VQ Y  I+YISCNP++L  +L  LS TH I R ALFDQFPYT HME GV L
Sbjct: 303 GMDPDTVKLVQGYERIVYISCNPNTLIDNLVELSKTHKITRFALFDQFPYTDHMESGVFL 362

Query: 363 VRK 365
            RK
Sbjct: 363 ERK 365


>gi|319775220|ref|YP_004137708.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3047]
 gi|317449811|emb|CBY86019.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae F3047]
          Length = 363

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 203/361 (56%), Positives = 265/361 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD YHIMFD
Sbjct: 3   LPIFQYNELLQKKLEKLTALLRPFNAPDIQVFDSPTNHYRMRAEFRIWHEQDDFYHIMFD 62

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           Q T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L+YH
Sbjct: 63  QATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSLLYH 122

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YRQ+E
Sbjct: 123 KTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYRQVE 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAKPSV
Sbjct: 183 NSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSV 242

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR+GL
Sbjct: 243 AAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPRAGL 302

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +VQ Y  ILYISCNP + C +L  LS TH IE+ ALFDQFPYT HME GV L+R
Sbjct: 303 DPDTVKLVQNYDRILYISCNPHTQCDNLVELSKTHCIEKAALFDQFPYTDHMESGVWLIR 362

Query: 365 K 365
           K
Sbjct: 363 K 363


>gi|126176363|ref|YP_001052512.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS155]
 gi|160873306|ref|YP_001552622.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS195]
 gi|217975221|ref|YP_002359972.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS223]
 gi|171769982|sp|A3DA80|TRMA_SHEB5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|189036045|sp|A9KW82|TRMA_SHEB9 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|254789080|sp|B8EBM5|TRMA_SHEB2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|125999568|gb|ABN63643.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS155]
 gi|160858828|gb|ABX47362.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS195]
 gi|217500356|gb|ACK48549.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS223]
          Length = 365

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 192/363 (52%), Positives = 266/363 (73%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M
Sbjct: 4   AAMDPQTYDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+   E++R D ++P S+LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+
Sbjct: 64  FDKVLNEKVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDD WR  A  L+  L ++ + + +IGRA K KI LD+D+V E L V  +T +Y+Q
Sbjct: 124 YHRQLDDQWRADATALKAKLSSQ-FNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA ++V MLEW + AT+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVSVKMLEWAIDATQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV+AA+YNI  N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVDAAQYNIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T+ +VQ Y  ILYISCNP++L  +L  L+ TH + R ALFDQFPYT HME GVLL
Sbjct: 303 GIDPDTLALVQGYERILYISCNPETLKDNLQQLNETHKVTRFALFDQFPYTDHMETGVLL 362

Query: 363 VRK 365
            R+
Sbjct: 363 ERR 365


>gi|146294594|ref|YP_001185018.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens CN-32]
 gi|172046872|sp|A4YB86|TRMA_SHEPC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|145566284|gb|ABP77219.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens CN-32]
          Length = 366

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 193/362 (53%), Positives = 263/362 (72%), Gaps = 1/362 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M
Sbjct: 4   AAMDPQTYDAQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+   E++R D ++P S+LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+
Sbjct: 64  FDKVLNEKVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDD WR  A  L+  L ++ + + +IGRA K KI LD+D+V E L V  +T +Y+Q
Sbjct: 124 YHRQLDDQWRTNAAALKAKLSSQ-FNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA + V MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SVEAA+YNI AN + N++I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVEAAQYNIEANGIKNLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T+ +VQ Y  ILYISCNPD+L  +L  L  TH + + ALFDQFPYT HME GVLL
Sbjct: 303 GIDPDTLALVQGYERILYISCNPDTLKDNLEQLYKTHRVTQFALFDQFPYTDHMETGVLL 362

Query: 363 VR 364
            R
Sbjct: 363 ER 364


>gi|152998729|ref|YP_001364410.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS185]
 gi|171704511|sp|A6WHQ8|TRMA_SHEB8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|151363347|gb|ABS06347.1| tRNA (uracil-5-)-methyltransferase [Shewanella baltica OS185]
          Length = 365

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 191/363 (52%), Positives = 267/363 (73%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M
Sbjct: 4   AAMDPQTYDTQLEHKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRMWHDGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+   E++R D ++P S+LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+
Sbjct: 64  FDKVLNEKVRCDQYLPASVLINQMMSALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDD WR  A  L+  L ++ + + +IGRA K KI LD+D+V E L V  +T +Y+Q
Sbjct: 124 YHRQLDDQWRADAAALKTKLSSQ-FNVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA ++V MLEW + AT+  +GDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVSVKMLEWAIDATQDSEGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV+AA+YNI  N + N++I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVDAAQYNIEVNGIENLQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T+ +VQ Y  ILYISCNP++L  +L +L+ TH + R ALFDQFPYT HME GVLL
Sbjct: 303 GIDPDTLALVQGYERILYISCNPETLKDNLQLLNETHKVTRFALFDQFPYTEHMETGVLL 362

Query: 363 VRK 365
            R+
Sbjct: 363 ERR 365


>gi|91791600|ref|YP_561251.1| tRNA (uracil-5-)-methyltransferase [Shewanella denitrificans OS217]
 gi|123061360|sp|Q12SP8|TRMA_SHEDO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|91713602|gb|ABE53528.1| tRNA (uracil-5-)-methyltransferase [Shewanella denitrificans OS217]
          Length = 365

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 193/363 (53%), Positives = 267/363 (73%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QLAEK  +L +    F  P L++F SEP HYRMRAEF +WH+GDDLY+ M
Sbjct: 4   AAMDPSNYDAQLAEKKRKLSEGFAEFAPPELEVFASEPAHYRMRAEFRVWHEGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+    ++R + ++P S LINA+M  ++  +R    LR +LFQ+D+L++ S + +V+L+
Sbjct: 64  FDKVLDAKVRCEQYLPASTLINAIMTSLVEELRPNHSLRHRLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W+  A  L+  L ++ + + +IGRA K KI LD+D+V E + V G+ L Y+Q
Sbjct: 124 YHRQLDEQWQVEAAALKQRLSSQ-FNVNIIGRARKQKIDLDKDFVVETIKVNGQDLHYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA +++ MLEW + ATK  QGDLLELYCGNGNF++ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVSIKMLEWAIDATKQSQGDLLELYCGNGNFTIALAQNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV AA+YNIA N+V+NV+I+RMS+++F+ AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVGAAQYNIAINNVDNVQIIRMSAEDFSDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+DD T+ ++Q Y  ILYISCNP++L  +L  LS++H I R ALFDQFPYT HME GVLL
Sbjct: 303 GIDDETLKLIQGYERILYISCNPETLKDNLQTLSSSHKITRFALFDQFPYTHHMESGVLL 362

Query: 363 VRK 365
            RK
Sbjct: 363 ERK 365


>gi|119773334|ref|YP_926074.1| tRNA (uracil-5-)-methyltransferase [Shewanella amazonensis SB2B]
 gi|262827940|sp|A1S1Z8|TRMA_SHEAM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|119765834|gb|ABL98404.1| tRNA (uracil-5-)-methyltransferase [Shewanella amazonensis SB2B]
          Length = 365

 Score =  418 bits (1075), Expect = e-115,   Method: Composition-based stats.
 Identities = 205/362 (56%), Positives = 261/362 (72%), Gaps = 1/362 (0%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            +   QYEQQL +K   L +    +  P L++F S P HYRMR EF +WHDGDDLY+ MF
Sbjct: 5   AMDPQQYEQQLEQKCQALTEAFAHYNPPALEVFPSAPAHYRMRCEFRVWHDGDDLYYCMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           D   KE++R D F+P S LIN +M  ++  +R    LR KLFQ+D+L++ S + +V+L+Y
Sbjct: 65  DNVAKEKVRTDQFLPASELINRMMPALLDELRPNRALRHKLFQVDFLSTLSGEILVSLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LDD W   A  L+  L    +++ +IGRA K K  LDRD+V E L V G+TL Y+Q+
Sbjct: 125 HRQLDDQWLTEARALKARLGEH-FKVDIIGRARKQKFVLDRDFVVESLDVDGKTLHYKQV 183

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNAG+ V MLEW L ATK   GDLLELYCGNGNFS+ LA +F +VLA E+AKPS
Sbjct: 184 ENSFTQPNAGVAVKMLEWALDATKQSSGDLLELYCGNGNFSIALAPNFGKVLATELAKPS 243

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VEAA+YNI  N V+N+ IVRMS++EFT+AM+ E+ FNRL DID+ SY+  TIFVDPPR+G
Sbjct: 244 VEAAQYNIQVNKVSNLDIVRMSAEEFTEAMKGEKRFNRLGDIDLQSYQCNTIFVDPPRAG 303

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDD TV +VQ Y +ILYISCNPD+L  +L +LS TH + R ALFDQFPYT H E GV+L 
Sbjct: 304 LDDETVKLVQGYENILYISCNPDTLNDNLKVLSETHEVVRFALFDQFPYTHHTEAGVMLK 363

Query: 364 RK 365
           R+
Sbjct: 364 RR 365


>gi|114561313|ref|YP_748826.1| tRNA (uracil-5-)-methyltransferase [Shewanella frigidimarina NCIMB
           400]
 gi|122301133|sp|Q089S7|TRMA_SHEFN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|114332606|gb|ABI69988.1| tRNA (uracil-5-)-methyltransferase [Shewanella frigidimarina NCIMB
           400]
          Length = 365

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 197/363 (54%), Positives = 267/363 (73%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL +K  +L +    F  P L++F SEP+HYRMRAEF +WH GDDLY+ M
Sbjct: 4   AAMDPKNYDAQLQQKRIKLEKAFADFNPPALEVFASEPMHYRMRAEFRMWHQGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+    ++R D ++P  L+IN +M  ++A +   P LR +LFQ+D+L++ S + +V+L+
Sbjct: 64  FDKALNAKVRCDQYLPAGLIINQMMAALIAELTPNPALRYRLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ WRE A +L+  L A+ + + +IGRA K KI LD+D+V E LTV  + L Y+Q
Sbjct: 124 YHRQLDEEWREQATQLKAKLSAQ-FNVNIIGRARKQKIDLDKDFVVETLTVNEQVLHYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA ++V MLEW + ATK  QGDLLELYCGNGNF++ LAR+F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVSVKMLEWAIDATKDSQGDLLELYCGNGNFTIALARNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV+AA+YNI  NHV+NV+I+RMS+++F+ AM ++R+F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVDAAQYNIDINHVDNVQIIRMSAEDFSDAMAKKRQFRRLEGIDLDSYDCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T+ ++Q Y  ILYISCNP++L  +L  L  TH I R ALFDQFPYT HME GVLL
Sbjct: 303 GIDPETLKLIQGYERILYISCNPETLNDNLLTLGQTHKITRFALFDQFPYTDHMESGVLL 362

Query: 363 VRK 365
           VRK
Sbjct: 363 VRK 365


>gi|24371805|ref|NP_715847.1| tRNA (uracil-5-)-methyltransferase [Shewanella oneidensis MR-1]
 gi|50401568|sp|Q8CX51|TRMA_SHEON RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|24345607|gb|AAN53292.1|AE015470_5 tRNA (uracil-5-)-methyltransferase [Shewanella oneidensis MR-1]
          Length = 366

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 191/362 (52%), Positives = 263/362 (72%), Gaps = 1/362 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q    F+ P++++F S+P HYRMRAEF +WH+GDDLY+ M
Sbjct: 4   AAMDPTTYDAQLEAKRIKLEQAFAQFETPSIEVFASDPEHYRMRAEFRVWHEGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+   +++R D ++P S LIN +M  ++A ++  P LR KLFQ+D+L++ S + +V+L+
Sbjct: 64  FDKALNDKVRCDQYLPASTLINEMMAALIAELKPNPSLRHKLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDD WR  AI L+  L ++ +++ +IGRA K KI LD+D+V E L V  +   Y+Q
Sbjct: 124 YHRQLDDQWRAEAIALKAKLSSQ-FKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA + + MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV+AA+YNI  N ++N++I+RMS++EF+ AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVDAAQYNIEINGIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYLCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D AT+ +VQ Y  ILYISCNPD+L  +L  L  TH + R ALFDQFPYT HME GVLL
Sbjct: 303 GIDPATLDLVQGYERILYISCNPDTLKDNLQQLYKTHKVTRFALFDQFPYTDHMETGVLL 362

Query: 363 VR 364
            R
Sbjct: 363 ER 364


>gi|308047961|ref|YP_003911527.1| tRNA (uracil-5-)-methyltransferase [Ferrimonas balearica DSM 9799]
 gi|307630151|gb|ADN74453.1| tRNA (uracil-5-)-methyltransferase [Ferrimonas balearica DSM 9799]
          Length = 364

 Score =  418 bits (1074), Expect = e-115,   Method: Composition-based stats.
 Identities = 200/362 (55%), Positives = 259/362 (71%), Gaps = 3/362 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             L   QY+ QL EK +R+R +   F  P L++F SEP HYRMRAEF +WHDGDDL +IM
Sbjct: 4   AALDPRQYQTQLDEKCERMRALFAPFNAPELEVFPSEPEHYRMRAEFRVWHDGDDLNYIM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FDQ  + ++ +  ++P S LIN  M  ++  ++ +P+LR KLFQ+D+L++ S + +++L+
Sbjct: 64  FDQTQQAKVEVTQYLPASALINEYMPRLIEALKPDPVLRRKLFQVDFLSTLSGELVISLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDDAW +    LR        ++  IGRA K K+ L++DYVDE L V G+   YRQ
Sbjct: 124 YHRQLDDAWCDAIRELRAR---WDNKVHFIGRARKQKVTLEQDYVDEVLHVHGQPYHYRQ 180

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IEN+FTQPN  +   MLEW + AT+   GDLLELYCGNGNFSL LA++F+RVLA E+AKP
Sbjct: 181 IENAFTQPNGKVAEKMLEWAVDATRNSDGDLLELYCGNGNFSLALAQNFERVLATELAKP 240

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SVEAA+YNIA N+++NV I+RMS+++FT A+   REF RLK ID+  YR  TIFVDPPR+
Sbjct: 241 SVEAAQYNIAKNNIDNVTILRMSAEDFTDAINGVREFRRLKGIDLSGYRCNTIFVDPPRA 300

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD AT  MVQ Y  ILYISCNP++L  +L  LS TH + RLALFDQFPYT HME GVLL
Sbjct: 301 GLDPATEKMVQGYDRILYISCNPETLLENLKTLSQTHKLSRLALFDQFPYTHHMEAGVLL 360

Query: 363 VR 364
            R
Sbjct: 361 ER 362


>gi|304415290|ref|ZP_07395981.1| tRNA (uracil-5-)-methyltransferase [Candidatus Regiella insecticola
           LSR1]
 gi|304282856|gb|EFL91328.1| tRNA (uracil-5-)-methyltransferase [Candidatus Regiella insecticola
           LSR1]
          Length = 357

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 209/357 (58%), Positives = 274/357 (76%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           +A+KVD L+ ++  F+VP +++F S   HYRMRAEF +WHDGDDLYHIMF  +TK+R+R+
Sbjct: 1   MAKKVDCLKDILSQFEVPEVEVFSSPIEHYRMRAEFRVWHDGDDLYHIMFAPKTKQRIRV 60

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           ++F   S LIN LM  +++ ++ +P+LR KLFQIDYL++ S++ I +L+YHR LD+ W++
Sbjct: 61  EHFPIASQLINRLMKILISIVKNQPILRHKLFQIDYLSTYSNKIIASLLYHRKLDEEWQQ 120

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
            AIRLRD L  + + +QLIGRA KTKI LD+D+VDE L++AGR +IYRQIENSFTQPNA 
Sbjct: 121 QAIRLRDQLRLQGFDLQLIGRAAKTKIVLDQDHVDEVLSIAGRDIIYRQIENSFTQPNAA 180

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +N+HMLEW +  +K  QGDLLE YCGNGNFSL LAR+F RVLA EIAKPSV AA++NIA 
Sbjct: 181 VNIHMLEWAIDVSKNFQGDLLEPYCGNGNFSLALARNFRRVLATEIAKPSVAAAQFNIAV 240

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++NV I+RMS++E  QA+  +R+FNRL+ I++ SY  +TI VDPPR GLDD TV M  
Sbjct: 241 NGIDNVTIIRMSAQELVQALAGQRQFNRLRGIELKSYHCETILVDPPRCGLDDTTVKMAS 300

Query: 314 AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
            Y  I+YISCNP SL  +L  L  T+ I RLALFDQFPYT H+ECGVLL ++    H
Sbjct: 301 TYSRIIYISCNPISLRSNLEQLQHTYKISRLALFDQFPYTEHIECGVLLEKREPVNH 357


>gi|157959994|ref|YP_001500028.1| tRNA (uracil-5-)-methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|189036047|sp|A8GYV6|TRMA_SHEPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157844994|gb|ABV85493.1| tRNA (uracil-5-)-methyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 365

 Score =  415 bits (1067), Expect = e-114,   Method: Composition-based stats.
 Identities = 191/363 (52%), Positives = 258/363 (71%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L+Q+   F  P L+ F SEP HYRMRAEF +WH+G+DLY+ M
Sbjct: 4   AAMDPTTYDVQLEAKCVKLKQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD++   ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+
Sbjct: 64  FDKELNSKVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD  W + A  L+  L  + + + LIGRA K KI  D+D+V E L VAG+ L Y Q
Sbjct: 124 YHKQLDSEWEQQAKILKQTLSTQ-FNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNGKVSVKMLEWAIDITKNSSGDLLELYCGNGNFSIALAQNFERVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SVE+A+YNI  N V N++I+RMS+++FT+AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVESAQYNIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD  TV +VQ Y  I+YISCNP++L  +L+ LS TH I R ALFDQFPYT HME GV L
Sbjct: 303 GLDADTVKLVQGYERIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFL 362

Query: 363 VRK 365
            +K
Sbjct: 363 EKK 365


>gi|332289572|ref|YP_004420424.1| hypothetical protein UMN179_01510 [Gallibacterium anatis UMN179]
 gi|330432468|gb|AEC17527.1| hypothetical protein UMN179_01510 [Gallibacterium anatis UMN179]
          Length = 365

 Score =  414 bits (1065), Expect = e-114,   Method: Composition-based stats.
 Identities = 210/365 (57%), Positives = 277/365 (75%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M        Y QQL +KV  L Q++  F    +++ RS   HYRMRAEF +WHDGDDLYH
Sbjct: 1   MQTDFSESHYNQQLEDKVYYLTQLLKPFFQGEIKVHRSALKHYRMRAEFRVWHDGDDLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFD ++K R RID F   S LINA+M  ++  ++ +P+LR +LFQIDYL++ S++ IV+
Sbjct: 61  IMFDPKSKRRYRIDQFPIASTLINAIMSALVPLLKQQPILRNQLFQIDYLSTVSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ LD+ W   A +L+  L  +++ +Q+IGRANK KICLD+D++DE L + G+  IY
Sbjct: 121 LLYHKKLDETWIAAAKQLKQQLEQQQFDVQIIGRANKQKICLDQDFIDEVLPINGKNYIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNAGIN  M+EW L+ T+  +GDLLELYCGNGNFS+ LA+HF +VLA EIA
Sbjct: 181 RQVENSFTQPNAGINCQMIEWALSCTENAEGDLLELYCGNGNFSVALAQHFRKVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KPSV+AA++NI ANH++N++I+RMS++EFTQA++  REF RLK ID+  Y+  TIFVDPP
Sbjct: 241 KPSVQAAQFNITANHIDNLQIIRMSAEEFTQALQGVREFYRLKGIDLKQYQCNTIFVDPP 300

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD  T+ MVQ Y HILYISCNP +L  +L++LS TH IE+ ALFDQFPYTRH+E GV
Sbjct: 301 RAGLDAETLKMVQQYDHILYISCNPQTLAENLTVLSQTHHIEKAALFDQFPYTRHIESGV 360

Query: 361 LLVRK 365
            LVRK
Sbjct: 361 YLVRK 365


>gi|167856458|ref|ZP_02479177.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis 29755]
 gi|167852418|gb|EDS23713.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis 29755]
          Length = 364

 Score =  414 bits (1065), Expect = e-114,   Method: Composition-based stats.
 Identities = 200/361 (55%), Positives = 251/361 (69%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL I QY   LA+K + L  ++  F  P L +F S+  H+R+RAEF +WHD  DLYHIMF
Sbjct: 2   TLPIHQYPALLAKKAENLTALLAPFNAPELDVFASDTSHFRLRAEFRVWHDNGDLYHIMF 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQ TK+R R+D F   S LIN +M  ++A I+   LL  KLFQIDYL++ S Q  V+++Y
Sbjct: 62  DQATKQRYRVDQFPIASQLINRMMTVLLAEIKDNELLTRKLFQIDYLSTLSGQIAVSMLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L + W E A  L+  L    + +QLIGRA K KI LD DYV+E L V G+   YRQ+
Sbjct: 122 HKSLTEEWIEQAKLLKQRLIGYGFDVQLIGRATKQKIALDCDYVEEALNVDGQIYRYRQV 181

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPN  +N+ MLEW  A T   +GDLLELYCGNGNFS+ LA  F +VLA EI+K S
Sbjct: 182 ENSFTQPNGKMNIKMLEWARACTANSKGDLLELYCGNGNFSIALANQFRKVLATEISKSS 241

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE+A+YNIA N V+N++I+RMS++EFT+AM   R F RL+ ID+  Y   TIFVDPPR G
Sbjct: 242 VESAQYNIAVNGVDNLQIIRMSAEEFTEAMNGVRVFYRLRGIDLKQYDCNTIFVDPPRVG 301

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ MVQ Y  ILYISCNP +L  +L  L+ TH IER ALFDQFPYT H+E GV L+
Sbjct: 302 LDQATLEMVQGYERILYISCNPHTLADNLKQLTQTHRIERCALFDQFPYTEHIESGVWLI 361

Query: 364 R 364
           R
Sbjct: 362 R 362


>gi|332535185|ref|ZP_08410992.1| tRNA (uracil54-C5-)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035404|gb|EGI71904.1| tRNA (uracil54-C5-)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 365

 Score =  414 bits (1065), Expect = e-114,   Method: Composition-based stats.
 Identities = 195/361 (54%), Positives = 259/361 (71%), Gaps = 1/361 (0%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +   QY+ QL+EK  R+      F V  L++F SEP +YR RAEF +WHDGDDL+HIMFD
Sbjct: 6   IDTTQYQAQLSEKEQRISTQFQRFGVEQLEVFSSEPTNYRQRAEFRVWHDGDDLFHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTKE++R+D F P + L+  +M  M+  ++   +LR KLFQIDYL++ S + +V+L+YH
Sbjct: 66  QQTKEKIRVDTFDPAAPLVGEIMQVMIENLKPCEILRRKLFQIDYLSTLSGEILVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W      L++ L + KY+I  IGRA K K  L  D+V ERLT+ G+ LIY+Q+E
Sbjct: 126 KPLDDEWLSEIKALKEKLSS-KYKIDFIGRARKQKEVLGDDFVTERLTINGQELIYQQVE 184

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N++MLEW     K ++ DLLELYCGNGNFS+ LA  F++VLA EI+K SV
Sbjct: 185 NSFTQPNAKVNINMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGCFNKVLATEISKSSV 244

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N+V N+ I+RMSS+EFTQAM  ER F+RL  ID+ SY  +TI VDPPR+G+
Sbjct: 245 HSAQYNIAKNNVENLDIIRMSSEEFTQAMNGERTFSRLDGIDLKSYDCQTILVDPPRAGM 304

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  +V  Y  I+YISCNP++L RDL  L+ TH ++R A+FDQFPYT H+E GV L R
Sbjct: 305 DALTCDLVANYESIIYISCNPETLERDLDHLTRTHNVKRFAIFDQFPYTHHIESGVFLQR 364

Query: 365 K 365
           K
Sbjct: 365 K 365


>gi|33151895|ref|NP_873248.1| tRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi 35000HP]
 gi|50401509|sp|Q7U339|TRMA_HAEDU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|33148116|gb|AAP95637.1| tRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi 35000HP]
          Length = 369

 Score =  414 bits (1065), Expect = e-114,   Method: Composition-based stats.
 Identities = 200/368 (54%), Positives = 262/368 (71%), Gaps = 6/368 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD-----DL 58
           +L I+QY + LA+KVD L  ++  F  P   IF SE  H+RMRAEF +WH  +     DL
Sbjct: 2   SLPIEQYPELLAQKVDNLTALLAPFNPPPFDIFASETSHFRMRAEFRVWHQKNEQGENDL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFD  TK+R R+D     + LIN +M +++  I+  P+L  KLFQ+DYLT+ S +  
Sbjct: 62  YHIMFDPTTKQRYRVDQLPIANQLINTMMQKLLTQIQGIPVLTHKLFQVDYLTTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           ++L+YH+ L D W   A  L+  L      + +IGRA+K KI +D DYV E+L VAG+TL
Sbjct: 122 ISLLYHKKLTDEWLAQAKLLKQRLSEPGLTVHIIGRASKQKIAIDCDYVKEKLNVAGKTL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAV 237
           IYRQ+ENSFTQPNA +N++MLEW    T   Q  DLLELYCGNGNFS+ LA +F +VLA 
Sbjct: 182 IYRQVENSFTQPNAKMNINMLEWAQKCTANSQDSDLLELYCGNGNFSIALAGNFRKVLAT 241

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI K SV +A+YNIA N ++N++I+RMS++EFTQA+   R+FNRL+ ID+ +Y+  TIFV
Sbjct: 242 EICKSSVHSAQYNIAQNGIDNLQIIRMSAEEFTQAINGVRQFNRLQGIDLSAYQCNTIFV 301

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPR+GLD AT+ MVQ YP ILYISCNP +L  +L  L+TTH IER+ALFDQFPYT H+E
Sbjct: 302 DPPRAGLDQATLNMVQNYPRILYISCNPATLADNLRQLTTTHRIERVALFDQFPYTHHIE 361

Query: 358 CGVLLVRK 365
            GV L+RK
Sbjct: 362 SGVWLIRK 369


>gi|90407368|ref|ZP_01215553.1| tRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3]
 gi|90311519|gb|EAS39619.1| tRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3]
          Length = 365

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 192/359 (53%), Positives = 270/359 (75%), Gaps = 1/359 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            D Y+ QL  K     +  + F +P+L+IF S  +HYRMR+EF +WH+GDDLY+IMFD++
Sbjct: 8   PDNYDMQLNAKKTLFNEQFVDFNLPDLEIFASPKLHYRMRSEFRVWHEGDDLYYIMFDKE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           TK+++R+D F P S LINALM +++  I++   LR KLFQID+L++ S Q +V+L+YH+ 
Sbjct: 68  TKQKIRVDQFPPASELINALMPQLINLIKVSKTLRFKLFQIDFLSTLSGQILVSLLYHKQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD+ W E    L+  L ++++ I  +GRA K K+ LD+D+V E L V G+TLIY+Q+ENS
Sbjct: 128 LDEQWVEELNALKATL-SKQFDINFMGRAKKQKLILDKDHVIESLEVDGKTLIYQQVENS 186

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +++ MLEW +  T+  +GDLLELYCGNGNFS+ LA++F++VLA EIAKPSV +
Sbjct: 187 FTQPNTEVSIKMLEWAIDCTRNSEGDLLELYCGNGNFSIALAKNFNKVLATEIAKPSVHS 246

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+YNIAANH++N+ I+RMS++EFTQA+ + R F+RL+ I++  Y+  TIFVDPPR+GLDD
Sbjct: 247 AQYNIAANHIDNLTIIRMSAEEFTQALNKVRVFHRLEGINLDDYQCNTIFVDPPRAGLDD 306

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T+ MVQ Y +ILYISCNP++L  +L     TH +ER ALFDQFPYT H E GV L+++
Sbjct: 307 ETIKMVQTYDNILYISCNPETLKSNLQQFDATHKVERFALFDQFPYTHHTEAGVYLIKR 365


>gi|219872016|ref|YP_002476391.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis SH0165]
 gi|254789078|sp|B8F7Z1|TRMA_HAEPS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|219692220|gb|ACL33443.1| tRNA (uracil-5-)-methyltransferase [Haemophilus parasuis SH0165]
          Length = 369

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 200/361 (55%), Positives = 251/361 (69%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           TL I QY   LA+K + L  ++  F  P L +F S+  H+R+RAEF +WHD  DLYHIMF
Sbjct: 2   TLPIHQYPALLAKKAENLTALLAPFNAPELDVFASDTSHFRLRAEFRVWHDNGDLYHIMF 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQ TK+R R+D F   S LIN +M  ++A I+   LL  KLFQIDYL++ S Q  V+++Y
Sbjct: 62  DQATKQRYRVDQFPIASQLINRMMTVLLAEIKGNELLTRKLFQIDYLSTLSGQIAVSMLY 121

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L + W E A  L+  L    + +QLIGRA K KI LD DYV+E L V G+   YRQ+
Sbjct: 122 HKSLTEEWIEQAKLLKQRLIGYGFDVQLIGRATKQKIALDCDYVEEALNVDGQIYRYRQV 181

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPN  +N+ MLEW  A T   +GDLLELYCGNGNFS+ LA  F +VLA EI+K S
Sbjct: 182 ENSFTQPNGKMNIKMLEWARACTANSKGDLLELYCGNGNFSIALANQFRKVLATEISKSS 241

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE+A+YNIA N V+N++I+RMS++EFT+AM   R F RL+ ID+  Y   TIFVDPPR G
Sbjct: 242 VESAQYNIAVNGVDNLQIIRMSAEEFTEAMNGVRVFYRLRGIDLKQYDCNTIFVDPPRVG 301

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ MVQ Y  ILYISCNP +L  +L  L+ TH IER ALFDQFPYT H+E GV L+
Sbjct: 302 LDQATLEMVQGYEKILYISCNPHTLADNLKQLTQTHRIERCALFDQFPYTEHIESGVWLI 361

Query: 364 R 364
           R
Sbjct: 362 R 362


>gi|114045686|ref|YP_736236.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-7]
 gi|122945065|sp|Q0I0C6|TRMA_SHESR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|113887128|gb|ABI41179.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-7]
          Length = 365

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 190/363 (52%), Positives = 264/363 (72%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q    F+ P++++F SEP HYRMRAEF +WH+GDDLY+ M
Sbjct: 4   AAMDPTTYDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRVWHEGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+   +++R D ++P S LIN +M  ++A ++    LR KLFQ+D+L++ S + +V+L+
Sbjct: 64  FDKVLNDKVRCDQYLPASALINQMMAALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDD WR  A  L+  L ++ +++ +IGRA K KI LD+D+V E L V  +   Y+Q
Sbjct: 124 YHRQLDDQWRSEAAALKARLSSQ-FKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA + + MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV+AA+YNI  N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVDAAQYNIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D AT+ +VQ Y  ILYISCNPD+L  +L  L+ TH + R ALFDQFPYT HME GVLL
Sbjct: 303 GIDPATLELVQGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLL 362

Query: 363 VRK 365
            R+
Sbjct: 363 ERR 365


>gi|149911328|ref|ZP_01899948.1| tRNA (uracil-5-)-methyltransferase [Moritella sp. PE36]
 gi|149805568|gb|EDM65571.1| tRNA (uracil-5-)-methyltransferase [Moritella sp. PE36]
          Length = 365

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 196/361 (54%), Positives = 267/361 (73%), Gaps = 3/361 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            D Y+ QL +K  R R++   F  P L++F S   +YR+RAEF +WHDGDDLY+IMFD++
Sbjct: 6   PDNYQSQLDDKAARQREIFKKFSPPELEVFDSPAENYRLRAEFRVWHDGDDLYYIMFDKE 65

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           TK++++IDYF+PGS LIN +M  ++  ++   LLR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 66  TKQKIKIDYFLPGSKLINEIMPALLFELKKSNLLRFKLFQVDFLSTLSGELLVSLLYHRQ 125

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L D W   A  L++ L    + I +IGRA K K+ LDR++V E L VAG+ L Y+Q+ENS
Sbjct: 126 LSDEWITEAKALKEKLSEH-FNIDIIGRARKQKVVLDREFVVEELNVAGKKLKYKQVENS 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  MLEW L  TK   GDLLELYCGNGNFS+ LA +F++VLA EI+K SV++
Sbjct: 185 FTQPNGIVNQKMLEWSLDVTKNCSGDLLELYCGNGNFSIALAPNFEKVLATEISKSSVQS 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGL 304
           A+YNIA N ++N+ I+R+S++EFT A+  EREFNRLK  ++D+ ++   TIFVDPPR+GL
Sbjct: 245 AQYNIAENGLDNLTILRLSAEEFTIAINGEREFNRLKAANVDLTTFNCNTIFVDPPRAGL 304

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV MVQ Y +I+YISC+P++L  +L  LS THTIER ALFDQFPYT H+E GV LV+
Sbjct: 305 DADTVKMVQGYDNIVYISCSPETLSDNLEALSQTHTIERFALFDQFPYTHHVESGVYLVK 364

Query: 365 K 365
           K
Sbjct: 365 K 365


>gi|119472791|ref|ZP_01614728.1| tRNA (uracil-5-)-methyltransferase [Alteromonadales bacterium TW-7]
 gi|119444750|gb|EAW26055.1| tRNA (uracil-5-)-methyltransferase [Alteromonadales bacterium TW-7]
          Length = 365

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 196/361 (54%), Positives = 261/361 (72%), Gaps = 1/361 (0%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +   QY+ QL+EK  R+      F V  L++F SEPI+YR RAEF +WHDGDDL+HIMFD
Sbjct: 6   IDTTQYQAQLSEKEQRITSQFQRFGVEQLEVFSSEPINYRQRAEFRVWHDGDDLFHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTKE++R+D F P + L+  +M  M+  ++   +LR KLFQIDYL++ S + +V+L+YH
Sbjct: 66  QQTKEKIRVDTFDPAAPLVGEIMQVMIENLKPCEVLRRKLFQIDYLSTLSGEILVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W      L+  L + KY+I  IGRA K K  L  D+V E+LTV G+ LIY+Q+E
Sbjct: 126 KPLDDEWLREIKSLKAKL-SEKYKIDFIGRARKQKEVLGDDFVTEQLTVNGQELIYQQVE 184

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW     K ++ DLLELYCGNGNFS+ LA  F++VLA EI+K SV
Sbjct: 185 NSFTQPNAKVNISMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGSFNKVLATEISKSSV 244

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N+V+N+ I+RMSS+EFTQAM  ER F+RL  ID+ SY  +TI VDPPR+G+
Sbjct: 245 HSAQYNIAKNNVDNLDIIRMSSEEFTQAMNGERTFSRLDGIDLKSYDCQTILVDPPRAGM 304

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ T  +V  Y +I+YISCNPD+L RDL  L+ +H ++R A+FDQFPYT H+E GV L R
Sbjct: 305 DELTCDLVANYENIIYISCNPDTLERDLDHLTRSHNVKRFAIFDQFPYTHHIESGVFLQR 364

Query: 365 K 365
           K
Sbjct: 365 K 365


>gi|167626059|ref|YP_001676353.1| tRNA (uracil-5-)-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|189036046|sp|B0TMV6|TRMA_SHEHH RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|167356081|gb|ABZ78694.1| tRNA (uracil-5-)-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 365

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 191/363 (52%), Positives = 256/363 (70%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q+   F  P L+ F SEP HYRMRAEF +WH+G+DLY+ M
Sbjct: 4   AAMDPTTYDVQLETKRVKLTQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD++   ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+
Sbjct: 64  FDKELNSKVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD  W + A  L+  L  + + + LIGRA K KI  D+D+V E L VAG+ L Y Q
Sbjct: 124 YHKQLDSEWEQQAKILKQTLSTQ-FNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++FDRVLA E+AKP
Sbjct: 183 IENSFTQPNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SVE+A+YNI  N V N++I+RMS+++FT+AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVESAQYNIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD  TV +VQ Y  I+YISCNP +L  +L+ LS TH I R ALFDQFPYT HME GV L
Sbjct: 303 GLDADTVKLVQGYERIVYISCNPHTLLDNLAELSKTHKITRFALFDQFPYTDHMESGVFL 362

Query: 363 VRK 365
            ++
Sbjct: 363 EKR 365


>gi|319424830|gb|ADV52904.1| tRNA (uracil-5-)-methyltransferase [Shewanella putrefaciens 200]
          Length = 365

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 190/363 (52%), Positives = 262/363 (72%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q    F+ P++++F SEP +YRMRAEF +WHDGDDLY+ M
Sbjct: 4   AAMDPQTYDAQLEAKRIKLEQAFAQFETPSVEVFASEPANYRMRAEFRVWHDGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+   E++R + ++P S+LIN +M  ++A ++    LR KLFQ+D+L++ S + +V+L+
Sbjct: 64  FDKVLNEKVRCNQYLPASVLINQMMSALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDD W   A  L+  L   ++++ +IGRA K KI LD+D+V E L V  +T +Y+Q
Sbjct: 124 YHRQLDDQWLAEANMLKTKL-GHQFKVNIIGRARKQKIDLDKDFVVESLQVNDKTFLYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA + V MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVAVKMLEWAIDVTQDSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SVEAA+YNI AN + N++I+RMS+++F+ A+ ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVEAAQYNIEANGIKNLQIIRMSAEDFSDAIAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T+ +VQ Y  ILYISCNPD+L  +L  L  TH + R ALFDQFPYT HME GVLL
Sbjct: 303 GIDPDTLALVQGYERILYISCNPDTLKDNLEQLYKTHRVTRFALFDQFPYTDHMETGVLL 362

Query: 363 VRK 365
            R+
Sbjct: 363 ERR 365


>gi|117918637|ref|YP_867829.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. ANA-3]
 gi|134035337|sp|A0KRK4|TRMA_SHESA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|117610969|gb|ABK46423.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. ANA-3]
          Length = 365

 Score =  412 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 188/363 (51%), Positives = 263/363 (72%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q    F+ P++++F SEP HYRMRAEF +WH+GDDLY+ M
Sbjct: 4   AAMDPTTYDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRVWHEGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+   +++R D ++P S LIN +M  ++  ++    LR KLFQ+D+L++ S + +V+L+
Sbjct: 64  FDKVLNDKVRCDQYLPASALINQMMAALITELKPNHSLRHKLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDD WR  A  L+  L ++ +++ +IGRA K KI LD+D+V E L V  +   Y+Q
Sbjct: 124 YHRQLDDQWRSEAAALKARLSSQ-FKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA + + MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV+AA+YNI  N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVDAAQYNIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D AT+ +V+ Y  ILYISCNPD+L  +L  L+ TH + R ALFDQFPYT HME GVLL
Sbjct: 303 GIDPATLELVRGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLL 362

Query: 363 VRK 365
            R+
Sbjct: 363 ERR 365


>gi|77359221|ref|YP_338796.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas haloplanktis
           TAC125]
 gi|123589634|sp|Q3ILM2|TRMA_PSEHT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|76874132|emb|CAI85353.1| tRNA (Uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) (RUMT)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 367

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 194/363 (53%), Positives = 261/363 (71%), Gaps = 1/363 (0%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +   QY+ QL+EK  R+      F V  L++F SEPI+YR RAEF +WHDGDDL+HIMFD
Sbjct: 6   IDTSQYDAQLSEKEQRIAAQFQRFGVDKLEVFSSEPINYRQRAEFRVWHDGDDLFHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK+++R+D F P + L+  +M  M+  ++   +LR KLFQIDYL++ S + +V+L+YH
Sbjct: 66  QQTKDKIRVDSFDPAAPLVGEVMQVMIDNLKSCEILRRKLFQIDYLSTLSGEILVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ W      L++ L + KY+I  IGRA K K  L  DYV ERL V G+ LIY+Q+E
Sbjct: 126 KPLDEHWLSEINTLKEKLSS-KYKIDFIGRARKQKEMLGDDYVTERLNVNGQELIYQQVE 184

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW     K ++ DLLELYCGNGNFS+ LA  F++VLA EI+K SV
Sbjct: 185 NSFTQPNAKVNIKMLEWAQDLCKPLKNDLLELYCGNGNFSIALAGSFNKVLATEISKSSV 244

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+YNIA N V+N+ I+RMSS+EFTQAM  ER F+RL+ ID++SY  +TI VDPPR+G+
Sbjct: 245 HSAQYNIAQNKVDNLDIIRMSSEEFTQAMNGERSFSRLEGIDLNSYNCQTILVDPPRAGM 304

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  +V  Y  I+YISCNP++L RDL  L+ TH ++R A+FDQFPYT H+E GV L +
Sbjct: 305 DTLTCDLVANYESIIYISCNPETLERDLDHLTRTHEVKRFAIFDQFPYTHHIESGVFLQK 364

Query: 365 KPS 367
           K +
Sbjct: 365 KNT 367


>gi|113968523|ref|YP_732316.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-4]
 gi|123325499|sp|Q0HNV8|TRMA_SHESM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|113883207|gb|ABI37259.1| tRNA (uracil-5-)-methyltransferase [Shewanella sp. MR-4]
          Length = 365

 Score =  412 bits (1059), Expect = e-113,   Method: Composition-based stats.
 Identities = 191/363 (52%), Positives = 264/363 (72%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL  K  +L Q    F+ P++++F SEP HYRMRAEF IWH+GDDLY+ M
Sbjct: 4   AAMDPTTYDAQLTAKRIKLEQAFAQFETPSVEVFASEPAHYRMRAEFRIWHEGDDLYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+   +++R D ++P S LIN +M  ++A ++    LR KLFQ+D+L++ S + +V+L+
Sbjct: 64  FDKVLNDKVRCDQYLPASALINQMMAALIAELKPNHSLRHKLFQVDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LDD WR  A  L+  L ++ +++ +IGRA K KI LD+D+V E L V  +   Y+Q
Sbjct: 124 YHRQLDDQWRSEAAALKARLSSQ-FKVNIIGRARKQKIDLDKDFVVESLQVNDKVFHYKQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPNA + + MLEW +  T+  QGDLLELYCGNGNFS+ LA++F+RVLA E+AKP
Sbjct: 183 IENSFTQPNAKVAIKMLEWAIDVTQHSQGDLLELYCGNGNFSIALAQNFNRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV+AA+YNI  N+++N++I+RMS++EF+ AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVDAAQYNIEVNNIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYVCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D AT+ +VQ Y  ILYISCNPD+L  +L  L+ TH + R ALFDQFPYT HME GVLL
Sbjct: 303 GIDPATLELVQGYERILYISCNPDTLKDNLQQLNQTHKVTRFALFDQFPYTDHMETGVLL 362

Query: 363 VRK 365
            R+
Sbjct: 363 ERR 365


>gi|109900328|ref|YP_663583.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas atlantica
           T6c]
 gi|123064065|sp|Q15NK9|TRMA_PSEA6 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|109702609|gb|ABG42529.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas atlantica
           T6c]
          Length = 365

 Score =  411 bits (1057), Expect = e-113,   Method: Composition-based stats.
 Identities = 189/357 (52%), Positives = 264/357 (73%), Gaps = 1/357 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            YEQQLA+KV+ ++Q    F +P L+ F S P++YRMRAEF +WHDGD+L H+MFDQ TK
Sbjct: 10  DYEQQLAQKVNSVQQAFKTFSMPALEAFSSAPLNYRMRAEFRMWHDGDNLDHVMFDQSTK 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           ++  ++ F P S++IN +M+++++ ++   +LR KLFQIDYL++ +++ +VTL+YH+ L+
Sbjct: 70  QKYAVNQFPPASIVINEVMMKLLSLVKKNEVLRRKLFQIDYLSTLTNEILVTLVYHKPLE 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D W + A  LR  L   +++I +IGRA K K+ LD+DYV E L V  R   ++QIENSFT
Sbjct: 130 DEWLKEAKALRALLR-DEFKIDIIGRAKKQKVLLDKDYVIETLPVNDRLYTFKQIENSFT 188

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNAG+N  MLEW L  T+  QGDLLELYCG GNFSL LA++F +VLA EI+K SV AA+
Sbjct: 189 QPNAGVNSKMLEWALDVTQDCQGDLLELYCGAGNFSLPLAQNFRQVLATEISKSSVAAAQ 248

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            NI  N++ NV I+RMSS+EF QA+  ER F RL+ I++  Y  +T+ VDPPRSGLDD T
Sbjct: 249 DNIRLNNIENVTILRMSSEEFVQALNNERSFRRLEGINLQDYDCQTVLVDPPRSGLDDDT 308

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + M++ Y +I+YISCNP++L  +L++LS TH + R ALFDQFPYT H+E GV L ++
Sbjct: 309 LDMIKEYQNIVYISCNPETLNNNLAVLSETHNVVRFALFDQFPYTHHVESGVYLQKR 365


>gi|315125842|ref|YP_004067845.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315014356|gb|ADT67694.1| tRNA (uracil-5-)-methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 365

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 193/362 (53%), Positives = 258/362 (71%), Gaps = 1/362 (0%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            +   QY+ QL EK  R+ +    F V  L++F SEPI+YR RAEF +WHDGDDL+HIMF
Sbjct: 5   NIDTTQYDAQLNEKEQRITEQFQRFGVKQLEVFSSEPINYRQRAEFRVWHDGDDLFHIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           DQQTK+++R+D F P + L+  +M  M+  ++   +LR KLFQIDYL++ S + +V+L+Y
Sbjct: 65  DQQTKDKIRVDTFDPAAPLVGEIMQVMIDNLKGCEVLRRKLFQIDYLSTLSGEILVSLLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LD+ W      L++ L ++ Y+I  IGRA K K  L  D+V ERL V G+ LIY+Q+
Sbjct: 125 HKPLDEHWLTEINALKEKLSSQ-YKIDFIGRARKQKEKLGDDFVTERLMVNGQELIYQQV 183

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N+ MLEW     K +  DLLELYCGNGNFS+ LA  F++VLA EI+K S
Sbjct: 184 ENSFTQPNAKVNIKMLEWAQELCKPLNNDLLELYCGNGNFSIALAGSFNKVLATEISKSS 243

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V +A+YNIA N V N+ I+RMSS+EFTQAM+ ER F+RL  ID+ SY  +TI VDPPR+G
Sbjct: 244 VHSAQYNIAQNQVTNLDIIRMSSEEFTQAMKGERTFSRLDGIDLSSYNCQTILVDPPRAG 303

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D  T  +V  Y +I+YISCNPD+L RDL  L+ TH ++R A+FDQFPYT H+E GV L 
Sbjct: 304 MDTLTCDLVANYENIIYISCNPDTLERDLEHLTQTHEVKRFAIFDQFPYTHHIESGVFLQ 363

Query: 364 RK 365
           +K
Sbjct: 364 KK 365


>gi|332304646|ref|YP_004432497.1| tRNA (uracil-5-)-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171975|gb|AEE21229.1| tRNA (uracil-5-)-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 365

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 189/357 (52%), Positives = 264/357 (73%), Gaps = 1/357 (0%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y++QLA+KVD + Q   AF +PN+++F S  ++YRMRAEF IWHDGD+L H+MFDQ TK
Sbjct: 10  DYDKQLAQKVDSVEQSFAAFSMPNVEVFTSAALNYRMRAEFRIWHDGDNLDHVMFDQATK 69

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           ++  ++ F P S++IN +M++++  ++   +LR KLFQIDYL++ +D+ +VTL+YH+ L+
Sbjct: 70  QKYSVNQFPPASVVINKVMVKLVPLLKDNEVLRRKLFQIDYLSTLTDEVLVTLVYHKPLE 129

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W   A  LR  L    ++I LIGRA K K+ LD+DYV E L V  R   ++QIENSFT
Sbjct: 130 EEWLIEATALRTVLREE-FKIDLIGRAKKQKVLLDKDYVLEALPVNERIYTFKQIENSFT 188

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNAG+N  MLEW L  T+  +GDLLELYCG GNFSL LA++F +VLA EI+K SV AA+
Sbjct: 189 QPNAGVNSKMLEWALDVTQDCEGDLLELYCGAGNFSLPLAQNFKQVLATEISKSSVAAAQ 248

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +NI  N+++NV I+RMSS+EF QA+  ER F RL+ +++  Y  +T+ VDPPRSGLDD T
Sbjct: 249 HNIRLNNIDNVTILRMSSEEFVQALNNERSFRRLEGVNLQKYNCQTVLVDPPRSGLDDET 308

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + MVQ Y +I+YISCNP++L  +L++LS TH + R ALFDQFP+T H+E GV L ++
Sbjct: 309 LAMVQGYANIVYISCNPETLKDNLAVLSETHDVVRFALFDQFPFTHHVESGVFLQKR 365


>gi|294142953|ref|YP_003558931.1| tRNA (uracil-5-)-methyltransferase [Shewanella violacea DSS12]
 gi|293329422|dbj|BAJ04153.1| tRNA (uracil-5-)-methyltransferase [Shewanella violacea DSS12]
          Length = 365

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 190/363 (52%), Positives = 257/363 (70%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL EK  +L Q+   F  P L+ F SE  +YRMR EF IWHDGDD+Y+ M
Sbjct: 4   AAMDPTTYDAQLEEKRIKLEQIFTDFDTPRLETFGSETANYRMRCEFRIWHDGDDMYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+    ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+
Sbjct: 64  FDKALDSKVRCDQFLPASSLINEMMPALIEELKPNTILRHRLFQIDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD  W   A  L+D L A K+++ LIGRA K K+  D+D+V E L+V G  L Y Q
Sbjct: 124 YHKQLDQEWEAEAKSLKDRL-ASKFKVNLIGRARKQKLIFDKDFVVETLSVNGEQLHYHQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++FDRVLA E+AKP
Sbjct: 183 IENSFTQPNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV++A+YNI  N+++N++I+RMS+++FT AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVQSAQYNIEINNIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD  TV +VQ Y  I+YISCNP++L  +L+ L+ TH I R ALFDQFPYT HME GV L
Sbjct: 303 GLDSNTVKLVQGYERIVYISCNPNTLIENLTELTKTHKITRFALFDQFPYTDHMESGVFL 362

Query: 363 VRK 365
            +K
Sbjct: 363 EKK 365


>gi|163749943|ref|ZP_02157188.1| tRNA (uracil-5-)-methyltransferase [Shewanella benthica KT99]
 gi|161330457|gb|EDQ01436.1| tRNA (uracil-5-)-methyltransferase [Shewanella benthica KT99]
          Length = 365

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 189/363 (52%), Positives = 256/363 (70%), Gaps = 1/363 (0%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +    Y+ QL +K  +L Q+   F  P L++F SE  HYRMR EF IWHDGDD+Y+ M
Sbjct: 4   AAMDPKTYDAQLEKKRIKLEQIFTDFDTPRLEVFGSETAHYRMRCEFRIWHDGDDMYYYM 63

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           FD+    ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+
Sbjct: 64  FDKALDSKVRCDQFLPASSLINEMMPALIEELKPNTILRHRLFQIDFLSTLSGEILVSLL 123

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD  W   A  L++ L A ++++ LIGRA K K+  D+D+V E L V G  L Y Q
Sbjct: 124 YHKQLDQQWEVEAKVLKEKL-ASRFKVNLIGRARKQKLIFDKDFVVESLNVNGEQLHYHQ 182

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPN  + V MLEW +  TK   GDLLELYCGNGNFS+ LA++FDRVLA E+AKP
Sbjct: 183 IENSFTQPNGKVAVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFDRVLATELAKP 242

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV++A+YNI  N ++N++I+RMS+++FT AM ++R F RL+ ID+ SY   TIFVDPPR+
Sbjct: 243 SVQSAQYNIEINKIDNLQIIRMSAEDFTDAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRA 302

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD  TV +VQ Y  I+YISCNP++L  +L+ L+ TH I R ALFDQFPYT HME GVLL
Sbjct: 303 GLDSNTVKLVQGYERIVYISCNPNTLTENLAELTKTHNITRFALFDQFPYTDHMESGVLL 362

Query: 363 VRK 365
            +K
Sbjct: 363 EKK 365


>gi|71279320|ref|YP_267102.1| tRNA (uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H]
 gi|123634093|sp|Q48A12|TRMA_COLP3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|71145060|gb|AAZ25533.1| tRNA (uracil-5-)-methyltransferase [Colwellia psychrerythraea 34H]
          Length = 364

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 180/365 (49%), Positives = 261/365 (71%), Gaps = 1/365 (0%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M   +  D Y+ QL++K   + ++   F +P   ++ S P++YR RAEF +WH+GDDLY+
Sbjct: 1   MFSHIHPDNYDAQLSKKQQDMAKLFSDFNLPAPDLYPSVPLNYRQRAEFRVWHEGDDLYY 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFD +TKE+ R+D F   S LIN  M  ++ATI+ +  LR KLFQ+D+L++ S + +++
Sbjct: 61  IMFDSKTKEKFRVDDFPVASELINNAMKALLATIKDQRELRFKLFQVDFLSTLSGELLIS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           ++YH+ L+D W+  A +L+  L      + +IGRA K KI +D+DYV E L V G+T +Y
Sbjct: 121 MLYHKPLEDNWQIEAEKLKAQLSTI-APVDIIGRAKKQKIIVDKDYVMESLNVGGKTYVY 179

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +Q+ENSFTQPNAG+N  ML W   AT+   GDL+ELYCGNGNFS+ LA +F+RVL  EI+
Sbjct: 180 QQVENSFTQPNAGVNEQMLLWAQQATQNAGGDLIELYCGNGNFSIALAENFERVLGTEIS 239

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           K SV +A+ NI+ N ++N+ IVRMSS+EF+QAM  ER+F RL+D D+ +Y + T+ VDPP
Sbjct: 240 KTSVRSAQINISENGIDNIDIVRMSSEEFSQAMNGERKFRRLEDFDLTTYNYDTVLVDPP 299

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD  +V +V+ +  I+YISCNP++L  +L++L  TH I++ ALFDQFPYT H+E GV
Sbjct: 300 RAGLDRDSVELVRRFNKIIYISCNPETLKDNLALLVETHQIDKFALFDQFPYTDHIETGV 359

Query: 361 LLVRK 365
           +L RK
Sbjct: 360 ILTRK 364


>gi|119944400|ref|YP_942080.1| tRNA (uracil-5-)-methyltransferase [Psychromonas ingrahamii 37]
 gi|262827937|sp|A1SSL6|TRMA_PSYIN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|119863004|gb|ABM02481.1| tRNA (uracil-5-)-methyltransferase [Psychromonas ingrahamii 37]
          Length = 365

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 201/359 (55%), Positives = 259/359 (72%), Gaps = 1/359 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + YE  LA K + L +    F  P L+ F S  +HYRMRAE  +WHDGD+LY+IMFD++
Sbjct: 8   PENYETLLAAKKEHLNKQFAIFNPPALECFASPKLHYRMRAELRVWHDGDELYYIMFDKK 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           TK++ R++ F P S LIN LM  ++  ++   +LR KLFQID+L++   Q IV+L+YH+ 
Sbjct: 68  TKQKFRVEQFPPASELINNLMPVLLELVKSSEILRYKLFQIDFLSNLKGQVIVSLLYHKQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LDD W   A R++  L  +++ I  IGRA K KI LD DYV E L V G  L Y+QIENS
Sbjct: 128 LDDNWLVEAKRIKAEL-LKQFDINFIGRARKQKILLDYDYVIEELQVDGNKLFYQQIENS 186

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+  QGDLLELYCGNGNFSL LA++F++VLA EIAKPSVE+
Sbjct: 187 FTQPNAKVCEKMLEWAIDCTRDSQGDLLELYCGNGNFSLALAKNFNKVLATEIAKPSVES 246

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A++N+A N +NNV ++RMS++EFTQA+  EREF RLK+I +  Y+  TI VDPPRSGLDD
Sbjct: 247 AQFNMAQNGINNVTVIRMSAEEFTQAINGEREFYRLKEITLSDYQCNTILVDPPRSGLDD 306

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            TV MVQ Y +ILYISCN D+L R+L +LS TH I+R ALFDQFPYT H E GV LV++
Sbjct: 307 ETVKMVQHYDNILYISCNADTLSRNLEVLSKTHEIKRFALFDQFPYTYHSEAGVYLVKR 365


>gi|212633111|ref|YP_002309636.1| tRNA (uracil-5-)-methyltransferase [Shewanella piezotolerans WP3]
 gi|212554595|gb|ACJ27049.1| tRNA (uracil-5-)-methyltransferase [Shewanella piezotolerans WP3]
          Length = 360

 Score =  408 bits (1048), Expect = e-112,   Method: Composition-based stats.
 Identities = 189/356 (53%), Positives = 257/356 (72%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L+Q+   F  P L+ F SE  HYRMRAEF +WH+G+DLY+ MFD++   
Sbjct: 6   YDVQLEAKRVKLKQLFTDFDTPELESFSSETAHYRMRAEFRMWHEGEDLYYYMFDKELNS 65

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+YH+ LD 
Sbjct: 66  KVRCDQFLPASELINKMMPVLVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDA 125

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W E A  L+  L ++ + + LIGRA K K+  D+D+V E L VAG+ L Y QIENSFTQ
Sbjct: 126 EWEEQAKILKQTLSSQ-FNVNLIGRARKQKLIFDKDFVVESLNVAGKQLQYHQIENSFTQ 184

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVE+A+Y
Sbjct: 185 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 244

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  NHV+N++I+RMS+++FT AM ++R + RL+ ID+ SY   TIFVDPPR+GLD+ TV
Sbjct: 245 NIKMNHVDNLQIIRMSAEDFTDAMAKKRSYRRLEGIDLDSYNCNTIFVDPPRAGLDENTV 304

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  I+YISCNP++L  +L  LS TH I R  LFDQFPYT HME GV L +K
Sbjct: 305 KLVQGYERIVYISCNPNTLLDNLKELSKTHNITRFVLFDQFPYTDHMESGVFLEKK 360


>gi|262831394|sp|B8CH56|TRMA_SHEPW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 365

 Score =  408 bits (1048), Expect = e-112,   Method: Composition-based stats.
 Identities = 189/356 (53%), Positives = 257/356 (72%), Gaps = 1/356 (0%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL  K  +L+Q+   F  P L+ F SE  HYRMRAEF +WH+G+DLY+ MFD++   
Sbjct: 11  YDVQLEAKRVKLKQLFTDFDTPELESFSSETAHYRMRAEFRMWHEGEDLYYYMFDKELNS 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
           ++R D F+P S LIN +M  ++  ++   +LR +LFQID+L++ S + +V+L+YH+ LD 
Sbjct: 71  KVRCDQFLPASELINKMMPVLVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDA 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W E A  L+  L ++ + + LIGRA K K+  D+D+V E L VAG+ L Y QIENSFTQ
Sbjct: 131 EWEEQAKILKQTLSSQ-FNVNLIGRARKQKLIFDKDFVVESLNVAGKQLQYHQIENSFTQ 189

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  ++V MLEW +  TK   GDLLELYCGNGNFS+ LA++F+RVLA E+AKPSVE+A+Y
Sbjct: 190 PNGKVSVKMLEWAIDVTKNSTGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 249

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI  NHV+N++I+RMS+++FT AM ++R + RL+ ID+ SY   TIFVDPPR+GLD+ TV
Sbjct: 250 NIKMNHVDNLQIIRMSAEDFTDAMAKKRSYRRLEGIDLDSYNCNTIFVDPPRAGLDENTV 309

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +VQ Y  I+YISCNP++L  +L  LS TH I R  LFDQFPYT HME GV L +K
Sbjct: 310 KLVQGYERIVYISCNPNTLLDNLKELSKTHNITRFVLFDQFPYTDHMESGVFLEKK 365


>gi|254229783|ref|ZP_04923190.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. Ex25]
 gi|151937682|gb|EDN56533.1| tRNA (uracil-5-)-methyltransferase [Vibrio sp. Ex25]
          Length = 337

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 188/336 (55%), Positives = 249/336 (74%), Gaps = 2/336 (0%)

Query: 32  NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM 91
            L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+T+E+ R+D F   S LIN LM  ++
Sbjct: 1   ELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQETREKYRVDQFPAASRLINDLMPLLV 60

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
             ++    LR KLFQ+D+L++ S + +V+L+YHR LD+ W E A  L+  L+   + + +
Sbjct: 61  EAMKDNDSLRRKLFQVDFLSTLSGEILVSLLYHRQLDEEWIENAKALKQRLNDEGFNLNI 120

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFTQPN  +   MLEW +  T+   G
Sbjct: 121 IGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSFTQPNGKVAEKMLEWAVDCTQESTG 180

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           DLLELYCGNGNFSL LA++FDRVLA E+AKPSV +A+YNIAAN ++NV+I+R+S++EFTQ
Sbjct: 181 DLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSAQYNIAANKIDNVQILRLSAEEFTQ 240

Query: 272 AMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
           A+  +REF RL+D  +D+ SY   TIFVDPPR+G+D  T  MVQ Y  I+YISCNP++L 
Sbjct: 241 AIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRAGMDADTCKMVQGYERIMYISCNPETLK 300

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +L IL  TH + R ALFDQFPYT HME GVLL RK
Sbjct: 301 ENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 336


>gi|262372741|ref|ZP_06066020.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter junii SH205]
 gi|262312766|gb|EEY93851.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter junii SH205]
          Length = 361

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/365 (48%), Positives = 247/365 (67%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y+QQL EKV+R+      F  P L++F+S   H+RMRAEF IWH  DDL++ MF  
Sbjct: 1   MTVSYQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRIWHTEDDLFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++  ++  P+L  ++F+ D+L++ S + +VTL
Sbjct: 61  AEDGKQKAVIRIDDFPIADSSINNLMPLLLEELKATPILSQRIFEADFLSTLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W   A  L D L+     I+++GR+   K+ +  DYV E+L V GRT  Y+
Sbjct: 121 IYHRRLDAEWESAAKALADKLN-----IKIMGRSRGQKVIIGDDYVVEQLNVHGRTFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +  HMLEW   A +G Q DLLELYCGNGNF+L L+  F RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCQHMLEWACDAAEGAQKDLLELYCGNGNFTLPLSLKFKRVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + ER F RL   +IDI SY F T+FVDP
Sbjct: 236 SSVHAAQWNIEQNQIDNIQVARLSAEEFTQAYQGERTFRRLLEAEIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L IL+ TH I++ A+FDQFP+T H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLHDNLKILTQTHRIQKFAMFDQFPFTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|134035060|sp|Q5QVT1|TRMA_IDILO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 366

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 179/361 (49%), Positives = 257/361 (71%), Gaps = 1/361 (0%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +   +Y QQLA+K DR+R+M   F +  +++F S   HYRMRAEF +WH+GDDLY+IMF+
Sbjct: 6   IDTSEYPQQLAQKADRVREMFRPFHLNEVEVFESPASHYRMRAEFRVWHEGDDLYYIMFN 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            +T+E++R++ F+PGSLLIN LM E+++ ++   +LR KLFQ+D+LT+ + +AI++L+YH
Sbjct: 66  PETREKIRMNEFIPGSLLINELMKELISLLKPNDVLRRKLFQVDFLTTTTGEAIISLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDD W + AI+LR+AL +   ++++IGRA K K  L ++ V E + V G++ +  Q E
Sbjct: 126 RPLDDQWEQEAIQLREALTSI-AKVEVIGRARKQKRVLYKESVTEEVKVDGKSYLSLQTE 184

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA IN  M+ W          DLLELYCGNGNF+L LA +F+RVLA EI+K SV
Sbjct: 185 NSFTQPNAIINQQMISWAKRHAGNNSHDLLELYCGNGNFTLPLAENFNRVLATEISKSSV 244

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AAR N   N++ NV +VRMS++EF+ A+  E E  R  D +IHS+  +T+ VDPPR+GL
Sbjct: 245 AAARENAELNNIKNVTVVRMSAEEFSAALSGELESKRAADAEIHSFDCQTVLVDPPRAGL 304

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T+ +V  Y  I+YISCNP++L  ++  LS++H +   A+FDQFPYT H+E GV+L R
Sbjct: 305 DKDTLKLVSQYQRIIYISCNPETLTENIHDLSSSHKVTAAAMFDQFPYTDHIETGVVLER 364

Query: 365 K 365
           K
Sbjct: 365 K 365


>gi|104783723|ref|YP_610221.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas entomophila L48]
 gi|122401746|sp|Q1I4J8|TRMA_PSEE4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|95112710|emb|CAK17438.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas entomophila L48]
          Length = 361

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 170/366 (46%), Positives = 230/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS      QY+ QLA K  RLR+++  F  P   +F S   HYR+RAEF +W +G   ++
Sbjct: 1   MSAVFDPSQYDAQLAAKAARLRELLAPFGAPEPSVFDSPREHYRLRAEFRLWREGGQRHY 60

Query: 61  IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF      + + ID F   S  IN LM  + A  +    L  +LFQ+++LT+ +  A+V
Sbjct: 61  AMFAPGEKHKAILIDDFPIASQRINELMPRLKAAWQGNEDLNNRLFQVEFLTTLAGDAMV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LD+AW   A +L   L+     + +IGR+   ++ + RDY  E L +AGRT  
Sbjct: 121 TLCYHRPLDEAWEAAAQQLASELN-----VSVIGRSKGKRVVIGRDYAVENLDIAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLGWAFEAMGERDDDLLELYCGNGNFTLPLATRARQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA +N+  N V+NV++VR+S++E TQA+   R F RL+ ID+ SY F T+FVDP
Sbjct: 236 SKTSVNAALHNLDENGVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYDFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L ++++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|221135408|ref|ZP_03561711.1| tRNA (uracil-5-)-methyltransferase [Glaciecola sp. HTCC2999]
          Length = 361

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 188/362 (51%), Positives = 258/362 (71%), Gaps = 4/362 (1%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           +  Y  QL+EK  RL  ++  F  P   N+ I+ S+  HYR RAEF +WHDGDDLYHIMF
Sbjct: 1   MTDYASQLSEKNARLTSLLSPFTHPSNLNIDIYPSQASHYRQRAEFRVWHDGDDLYHIMF 60

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           +Q+TK++ R+D+F   SLLIN +M  ++  I+  P+LR KLFQIDYL++ ++Q +V+++Y
Sbjct: 61  NQETKQQYRVDHFPVASLLINQVMDALITRIKTIPILRDKLFQIDYLSATTNQIVVSMLY 120

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ L D W E    L   + ++ YQIQ IGRA K K  ++ DYV E+L++ G+   ++ I
Sbjct: 121 HKKLSDEWVEKINELHTEM-SKTYQIQFIGRAKKQKTIINHDYVIEKLSIHGKEYTFKHI 179

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           ENSFTQPNA +N HM+EWV + T+ I GDLLELYCG GNF++ L+ +FD V+A EI+K S
Sbjct: 180 ENSFTQPNAEVNCHMIEWVASHTQSIAGDLLELYCGAGNFTIPLSDYFDNVMATEISKTS 239

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA+ NIA N + N  I+RMSS+EF  A  +ER + RL+ ID+ SY F T+ VDPPR+G
Sbjct: 240 VNAAQDNIAYNDIQNCTILRMSSEEFVSAKNKERAYRRLEGIDLDSYDFTTVLVDPPRAG 299

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+ M+  Y +I+YISCNPD+L  +L  L+ THTIER ALFDQFP+T H+E GV+L 
Sbjct: 300 LDMATINMINQYEYIIYISCNPDTLAHNLQELTKTHTIERAALFDQFPFTHHIESGVILK 359

Query: 364 RK 365
           R+
Sbjct: 360 RR 361


>gi|146305866|ref|YP_001186331.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina ymp]
 gi|166988119|sp|A4XQI3|TRMA_PSEMY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|145574067|gb|ABP83599.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina ymp]
          Length = 362

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/357 (47%), Positives = 226/357 (63%), Gaps = 6/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-TK 68
           Y+ QLAEK  RL +++  F  P  ++F S   HYR+RAEF +W +    ++ MF      
Sbjct: 11  YDAQLAEKQQRLIELLAPFAAPEPEVFDSPREHYRLRAEFRLWREDGQRHYAMFAPGDKH 70

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             + +D F   SL IN LM  + A  R    L  KLFQ+++LT+ +  A++TL YHR LD
Sbjct: 71  TPILLDDFPIASLRINELMPRLRAAWRASEALSFKLFQVEFLTTLAGDALITLAYHRPLD 130

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +AW+  A +L   L+     + L+GR+   ++ + RDYV+E LTVAGR   YRQ E +FT
Sbjct: 131 EAWQAAAEKLASELN-----VSLVGRSRGQRLVIGRDYVEEELTVAGRRFRYRQPEGAFT 185

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   ML W   A      DLLELYCGNGNF+L LA    RVLA EI+K SV AA 
Sbjct: 186 QPNGAVCEKMLGWAYEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAAL 245

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N+A N VNNV++VR+S++E TQA+   R F RL  ID+ SY F ++FVDPPR+G+D  T
Sbjct: 246 ANLADNGVNNVELVRLSAEELTQALNEVRPFRRLAGIDLKSYDFGSVFVDPPRAGMDPDT 305

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + + +  ILYISCNP++L  +++ LS TH + R ALFDQFPYT HME GVLL R+
Sbjct: 306 CELTRRFERILYISCNPETLAANIAQLSDTHQVTRCALFDQFPYTHHMEAGVLLERR 362


>gi|89092512|ref|ZP_01165465.1| tRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92]
 gi|89083024|gb|EAR62243.1| tRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92]
          Length = 362

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 181/360 (50%), Positives = 246/360 (68%), Gaps = 6/360 (1%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + YE QL EK  +  Q    F +P +++F S   HYRMR EF +WHD DDLY++MF++ 
Sbjct: 8   PENYESQLVEKKTKTAQQFAEFDLPEIEVFESPRSHYRMRCEFRVWHDEDDLYYVMFEKG 67

Query: 67  -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
               R+RID+    S  I+ +M E++  I+   +LR KLFQID+L++ S + +VTL+YHR
Sbjct: 68  NKHARIRIDHCPMVSERIHNVMFELLEAIKPSEVLRRKLFQIDFLSTLSGELLVTLLYHR 127

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +D+ W E A  L++     K+ IQLIGR+ KTKI LD+D+V E L V G    Y+Q+EN
Sbjct: 128 PIDEVWAEEARVLKE-----KFNIQLIGRSRKTKILLDQDFVVETLNVKGGEFHYKQVEN 182

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF+QPNA +  HM+ W + AT+G  GD++ELYCGNGNF+L LA++F RV+A EI+K SV 
Sbjct: 183 SFSQPNAEVCQHMINWAIDATEGAGGDMVELYCGNGNFTLPLAQNFRRVVATEISKTSVR 242

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           AA+YNI  N V NV +VR+SS+EF+Q +    E  R KD+ +    F T+ VDPPRSGLD
Sbjct: 243 AAQYNIEVNGVENVDVVRISSEEFSQVLSGAVEKRRTKDLGLKECNFTTVLVDPPRSGLD 302

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D TV  VQ Y +ILYISCNP++L  +L  ++ TH +ER A+FDQFPYT H+E GV L RK
Sbjct: 303 DDTVKQVQNYDNILYISCNPETLKTNLEEITKTHKLERFAIFDQFPYTDHLESGVFLTRK 362


>gi|313667944|ref|YP_004048228.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ST-640]
 gi|313005406|emb|CBN86840.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica 020-06]
          Length = 367

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 174/369 (47%), Positives = 241/369 (65%), Gaps = 11/369 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL +K DRL+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MNDYTQQLQDKKDRLKTLFADLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++   + +VT+I
Sbjct: 61  QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W   A  L+  L      I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWIRAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKITRLSAEEFTEAYTGKREFKRLKEGGIALADYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D  T+ +V  + +I+YISCNP++L  +L  L+ THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLAQTHTVERAALFDQFPFTPHIESGV 355

Query: 361 LLVRKPSGW 369
           LL +K  G 
Sbjct: 356 LLKKKILGK 364


>gi|146281305|ref|YP_001171458.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri A1501]
 gi|166988121|sp|A4VI15|TRMA_PSEU5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|145569510|gb|ABP78616.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri A1501]
          Length = 362

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 172/362 (47%), Positives = 235/362 (64%), Gaps = 6/362 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L   QY  QLAEK  RL +++  F  P  ++F S   HYR+RAEF +W +G   ++ MF+
Sbjct: 6   LDPAQYAAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREGGQRHYAMFE 65

Query: 65  QQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           Q  K + + ID F   S  IN LM ++ A  +   +L  KLFQ+++LT+ S  A++TL Y
Sbjct: 66  QGDKHKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAY 125

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LD+AW+  A +L   L      + L+GR+   +I + RDYV+E+L VAGR+  YRQ 
Sbjct: 126 HRPLDEAWQAEAEQLAADL-----GVSLVGRSKGKRIVIGRDYVEEQLVVAGRSFRYRQP 180

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           E +FTQPN  +   ML W   A      DLLELYCGNGNF+L LA    RVLA EI+K S
Sbjct: 181 EGAFTQPNGEVCQKMLNWAHEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTS 240

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA  NI  N ++N+++VR+S++E TQA+   R F RL  ID+ SY F ++FVDPPR+G
Sbjct: 241 VNAALANIEDNGLDNIELVRLSAEELTQALNEVRPFRRLAGIDLKSYSFGSVFVDPPRAG 300

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D  T  + + +  ILYISCNP++L ++++ L+ TH IER ALFDQFPYT HME GVLLV
Sbjct: 301 MDPDTCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLV 360

Query: 364 RK 365
           R+
Sbjct: 361 RR 362


>gi|50084803|ref|YP_046313.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ADP1]
 gi|115305867|sp|Q6FBS0|TRMA_ACIAD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|49530779|emb|CAG68491.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ADP1]
          Length = 361

 Score =  395 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 177/364 (48%), Positives = 240/364 (65%), Gaps = 11/364 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y+QQL  K++R+      F  P L++F S   H+RMRAEF IWH  +DL++ MF  
Sbjct: 1   MSQTYQQQLQSKIERITHQFAEFNPPALEVFESPEQHFRMRAEFRIWHTDNDLFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + KE +R+D F      IN LM  ++  ++  P L  ++F+ D+LT+ S + +VTL
Sbjct: 61  NEDGKQKEVIRVDEFPIADQSINQLMPRLLEELKANPTLSQRIFEADFLTTLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W   A  L + L+     I+++GR+   K+ +  DYV E+L V GRT  Y+
Sbjct: 121 IYHRKLDTEWESAAKALAEKLN-----IKIMGRSRGQKVIIGDDYVVEQLNVHGRTFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML W     +G   DLLELYCGNGNF+L L+ HF RVLA E+AK
Sbjct: 176 QIESSFTQPNAEVCQKMLTWACDVIQGSNQDLLELYCGNGNFTLPLSLHFRRVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N + N++I R+S++EFTQA + EREF RL++  IDI SY F TIFVDP
Sbjct: 236 SSVYAAQWNIEQNQIENIQIARLSAEEFTQAYQGEREFRRLQEANIDIQSYEFDTIFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ +++ +  ILYISCNPD+L  +L  LS TH I R ALFDQFP+T H+E G
Sbjct: 296 PRAGIDDETLKLLKGFKRILYISCNPDTLYNNLKTLSQTHKITRFALFDQFPFTHHVESG 355

Query: 360 VLLV 363
           VLL 
Sbjct: 356 VLLE 359


>gi|260550065|ref|ZP_05824279.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. RUH2624]
 gi|260406820|gb|EEX00299.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. RUH2624]
          Length = 361

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/365 (46%), Positives = 244/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH   D+++ MF++
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTESDMFYAMFER 60

Query: 66  ----QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
               + K  +RID F      IN LM  ++A ++ EPLL  +LF++D+L + S + +VTL
Sbjct: 61  NDEDKQKTVVRIDEFPIADKSINDLMPSLLAELKAEPLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L + L+     I+++GR+   K+ +  D+V E   ++ RT  Y+
Sbjct: 121 IYHRKLNQEWEQSAKALAEKLN-----IKIMGRSRGQKVVIGDDFVVEEFELSNRTFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIRSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTKTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|261378870|ref|ZP_05983443.1| tRNA (uracil-5-)-methyltransferase [Neisseria cinerea ATCC 14685]
 gi|269144685|gb|EEZ71103.1| tRNA (uracil-5-)-methyltransferase [Neisseria cinerea ATCC 14685]
          Length = 367

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/365 (47%), Positives = 239/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL  K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKASGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W   A  L+  L      I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWIRAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVDPP
Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFTRLKEGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHTVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|261379800|ref|ZP_05984373.1| tRNA (uracil-5-)-methyltransferase [Neisseria subflava NJ9703]
 gi|284797485|gb|EFC52832.1| tRNA (uracil-5-)-methyltransferase [Neisseria subflava NJ9703]
          Length = 360

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68
           Y+QQLA+K   L+Q+      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 69  ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  INALM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L++AW++ A  L     A    I +IGR+   KI L +D+V E LTV G+T  YRQIE 
Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALTVNGKTFRYRQIEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W   A K +  DLLELYCGNGNF+L L++HF++VLA E++K SV 
Sbjct: 179 SFTQPNAQVCQKMLTWACDAAKNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN + N+KI R+S++EFT+A  + REF RL++  ID+ +Y F TIFVDPPR+G
Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ +V  + ++LYISCNP++L  +L  L  THTIER ALFDQFP+T H+E GV L 
Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|327479464|gb|AEA82774.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas stutzeri DSM 4166]
          Length = 362

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/362 (47%), Positives = 235/362 (64%), Gaps = 6/362 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L   QY+ QLAEK  RL +++  F  P  ++F S   HYR+RAEF +W +    ++ MF+
Sbjct: 6   LDPAQYDAQLAEKAARLEELLAPFDAPAAEVFDSPREHYRLRAEFRLWREDGQRHYAMFE 65

Query: 65  QQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           Q  K + + ID F   S  IN LM ++ A  +   +L  KLFQ+++LT+ S  A++TL Y
Sbjct: 66  QGDKHKAILIDDFPIASRRINELMPQLKAAWQASEVLSFKLFQVEFLTTLSGDALITLAY 125

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LD+AW+  A +L   L      + L+GR+   +I + RDYV+E+L VAGR+  YRQ 
Sbjct: 126 HRPLDEAWQAEAEQLAADL-----GVSLVGRSKGKRIVIGRDYVEEQLVVAGRSFRYRQP 180

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           E +FTQPN  +   ML W   A      DLLELYCGNGNF+L LA    RVLA EI+K S
Sbjct: 181 EGAFTQPNGEVCQKMLNWTHEALGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTS 240

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V AA  NI  N ++N+++VR+S++E TQA+   R F RL  ID+ SY F ++FVDPPR+G
Sbjct: 241 VNAALANIEDNGLDNIELVRLSAEELTQALNEVRPFRRLAGIDLKSYSFGSVFVDPPRAG 300

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D  T  + + +  ILYISCNP++L ++++ L+ TH IER ALFDQFPYT HME GVLLV
Sbjct: 301 MDPDTCELTRRFERILYISCNPETLAQNIAQLADTHRIERCALFDQFPYTHHMEAGVLLV 360

Query: 364 RK 365
           R+
Sbjct: 361 RR 362


>gi|325121978|gb|ADY81501.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 361

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K++R+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIERITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM +++  ++ EP L  +LF+ D+L + S + +VTL
Sbjct: 61  NDDDKQKTVVRIDEFPIADHSINDLMPKLLEELKAEPKLSNRLFEADFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W + A  L D L      I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLDQEWEQAAKALADKL-----DIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L  LS TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLSQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|261399937|ref|ZP_05986062.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ATCC 23970]
 gi|269210388|gb|EEZ76843.1| tRNA (uracil-5-)-methyltransferase [Neisseria lactamica ATCC 23970]
          Length = 367

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 173/369 (46%), Positives = 239/369 (64%), Gaps = 11/369 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K DRL+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDRLKTLFAGLDVPEWEVYESLDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++   + +VT+I
Sbjct: 61  QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W   A  L+  L      I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWIRAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVDPP
Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKEGGIALADYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D  T+ +V  + +I+YISCNP++L  +L  L+ THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLAQTHTVERAALFDQFPFTPHIESGV 355

Query: 361 LLVRKPSGW 369
           LL +K  G 
Sbjct: 356 LLKKKILGK 364


>gi|330501841|ref|YP_004378710.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina NK-01]
 gi|328916127|gb|AEB56958.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas mendocina NK-01]
          Length = 362

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 166/357 (46%), Positives = 226/357 (63%), Gaps = 6/357 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-TK 68
           Y+ QLAEK  RL +++  F  P  ++F S   HYRMRAEF +W +    ++ MF      
Sbjct: 11  YDAQLAEKKARLVELLAPFAAPEPEVFDSPREHYRMRAEFRLWREDGQRHYAMFAPGDKH 70

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             + +D F   SL IN LM  + A  +    L  KLFQ+++LT+ +  A++TL YHR LD
Sbjct: 71  TPILLDDFPIASLRINELMPRLRAAWQASEALSFKLFQVEFLTTLAGDALITLAYHRPLD 130

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +AW+  A +L   L+     + L+GR+   ++ + RDYV+E L+VAGRT  YRQ E +FT
Sbjct: 131 EAWQAEAEKLAAELN-----VNLVGRSRGQRLVIGRDYVEEALSVAGRTFRYRQPEGAFT 185

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   ML W          DLLELYCGNGNF+L LA    RVLA EI+K SV AA 
Sbjct: 186 QPNGRVCEKMLGWAHDVLGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVNAAL 245

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N+A N V+NV++VR+S++E TQA+   R F RL  ID+ SY F ++FVDPPR+G+D  T
Sbjct: 246 ANLADNGVDNVELVRLSAEELTQALNEVRPFRRLAGIDLKSYDFGSVFVDPPRAGMDPDT 305

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + + +  ILYISCNP++L  +++ LS TH + R ALFDQFPYT HME GVLL R+
Sbjct: 306 CELTRRFQRILYISCNPETLAANIAQLSDTHKVTRSALFDQFPYTHHMEAGVLLERR 362


>gi|121635320|ref|YP_975565.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis FAM18]
 gi|262827905|sp|A1KV88|TRMA_NEIMF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262831406|sp|A9M1Q1|TRMA_NEIM0 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|120867026|emb|CAM10789.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis FAM18]
 gi|325132825|gb|EGC55505.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M6190]
 gi|325138728|gb|EGC61280.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ES14902]
 gi|325198777|gb|ADY94233.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis G2136]
          Length = 367

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/369 (46%), Positives = 241/369 (65%), Gaps = 11/369 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W + A         ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHTVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRKPSGW 369
           LL +K  G 
Sbjct: 356 LLKKKILGK 364


>gi|299770439|ref|YP_003732465.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. DR1]
 gi|298700527|gb|ADI91092.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. DR1]
          Length = 361

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYHQQLQTKIDRITAQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM +++  ++ EP L +++F+ D+L + S + +VTL
Sbjct: 61  NDDDKQKTVVRIDEFPIADQSINDLMPKLLEELKAEPKLSSRIFEADFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W + A  L + L      I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLDQEWEQAAKALAEKL-----DIKIMGRSRGQKIIIGNDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L IL  TH I + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKILGLTHRITKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|239502231|ref|ZP_04661541.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB900]
          Length = 361

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF+ID+L + S + +VTL
Sbjct: 61  NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEIDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L + L+     I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQAAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL+  DIDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D+ T+ ++Q +  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDNETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|262278877|ref|ZP_06056662.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259228|gb|EEY77961.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 361

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 171/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYHQQLQTKIDRITAQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM +++  ++ EP L ++LF+ D+L + S + +VTL
Sbjct: 61  NDDDKQKTVLRIDEFPIADQSINDLMPKLLEELKAEPKLSSRLFEADFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W + A  L + L      I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLDQEWEQAAKALAEKL-----DIKIMGRSRGQKIIIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L IL  TH I + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKILGLTHRITKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|226954161|ref|ZP_03824625.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ATCC 27244]
 gi|226835110|gb|EEH67493.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter sp. ATCC 27244]
          Length = 361

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 176/365 (48%), Positives = 243/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y+QQL EKV+R+      F  P L++F+S   H+RMRAEF +WH  DDL++ MF  
Sbjct: 1   MTVSYQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRLWHTDDDLFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++  ++  P+L  ++F+ D+L + S + +VTL
Sbjct: 61  AEDGKQKTVIRIDEFPIADQSINDLMPRLLEELKAVPILSQRIFEADFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W   A  L + L+     I+++GR+   K+ +  DYV E+L V GR   Y+
Sbjct: 121 IYHRRLDSEWEAAAKTLAEKLN-----IKIMGRSRGQKVIVGDDYVVEQLNVHGRIFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPN  +  HMLEW   A +  Q DLLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNTQVCKHMLEWACDAAQNSQKDLLELYCGNGNFTLPLSLKFNRVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N + N+++ R+S++EFTQA   EREF RL++  IDI SY F TIFVDP
Sbjct: 236 SSVYAAQWNIEQNQIENIQVARLSAEEFTQAYEGEREFRRLQEANIDIQSYHFDTIFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DDAT+ ++Q +  I+YISCNPD+L  +L  L+ TH I + ALFDQFP+T H+E G
Sbjct: 296 PRAGIDDATLALMQGFERIIYISCNPDTLHDNLKTLTQTHRISKFALFDQFPFTHHIESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|192359782|ref|YP_001982649.1| tRNA (uracil-5-)-methyltransferase [Cellvibrio japonicus Ueda107]
 gi|190685947|gb|ACE83625.1| tRNA (uracil-5-)-methyltransferase [Cellvibrio japonicus Ueda107]
          Length = 374

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 186/356 (52%), Positives = 241/356 (67%), Gaps = 5/356 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YE QL +K+ RL Q   +F +P + +FRS   H+RMR EF IWH+     ++MF Q  K 
Sbjct: 24  YEAQLQQKLIRLNQDFASFNLPEISVFRSPEKHFRMRTEFRIWHERGTAMYVMFSQTDKR 83

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
              I  F  GS  IN LM E+MA +     LR KLFQ+++LTS S+QA++TL+YH+ LD+
Sbjct: 84  PYPIREFPIGSERINQLMPELMALVNRHECLRHKLFQVEFLTSLSNQALITLVYHKPLDE 143

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  LR  L+     +++IGR+ K KI L+RD++ E L V GR   Y+Q+E SFTQ
Sbjct: 144 EWISAATDLRKQLN-----VEIIGRSRKQKILLERDHIIECLKVNGREYRYQQVEGSFTQ 198

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   ML W    T+   GDLLELYCGNGNF+L LA++FDRVLA EI+K SV++A Y
Sbjct: 199 PNARVCEQMLSWAQEQTRHTGGDLLELYCGNGNFTLPLAQNFDRVLATEISKTSVDSALY 258

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N V N++I RMSS+EFTQAM   REFNRLK I ++ YRF TIFVDPPR+GLD AT 
Sbjct: 259 NSRLNQVENLQIARMSSEEFTQAMDGVREFNRLKHISLNDYRFSTIFVDPPRAGLDPATC 318

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            + Q + +I+YISCNP++L  +L  L+ TH I   A FDQFPYT H+ECGVLL R+
Sbjct: 319 HLAQRFDNIVYISCNPETLKDNLQTLTQTHQICTFAAFDQFPYTHHLECGVLLQRR 374


>gi|260555229|ref|ZP_05827450.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC
           19606]
 gi|260411771|gb|EEX05068.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC
           19606]
          Length = 361

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/365 (46%), Positives = 242/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF++D+L + S + +VTL
Sbjct: 61  NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L + L+     I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQEAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL+  DIDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q++  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQSFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|170719970|ref|YP_001747658.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida W619]
 gi|226705984|sp|B1J3Q4|TRMA_PSEPW RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|169757973|gb|ACA71289.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida W619]
          Length = 361

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/366 (46%), Positives = 229/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y+ QL  KV RLR+++  F  P   +F S   HYR+RAEF +W +    ++
Sbjct: 1   MSAAFDPSAYDAQLQAKVTRLRELLAPFGAPQPAVFDSPREHYRLRAEFRLWREDGQRHY 60

Query: 61  IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF      + + ID F   S  INALM  + A  +    L  +LFQ+++LT+ +  A+V
Sbjct: 61  AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASDELSNRLFQVEFLTTLAGDAMV 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LDDAW   A +L + L      + LIGR+   ++ + RDY  E+L VAGR   
Sbjct: 121 TMCYHRPLDDAWEVAARQLAEEL-----GVSLIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAYDAIGERDDDLLELYCGNGNFTLPLATRVRQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N++ N V+NV++VR+S++E TQA+   R F RL+ ID+ SY F T+FVDP
Sbjct: 236 SKTSVNAALSNLSENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYAFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L +++S L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNISQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|262831412|sp|B3PJ74|TRMA_CELJU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 366

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 186/356 (52%), Positives = 241/356 (67%), Gaps = 5/356 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           YE QL +K+ RL Q   +F +P + +FRS   H+RMR EF IWH+     ++MF Q  K 
Sbjct: 16  YEAQLQQKLIRLNQDFASFNLPEISVFRSPEKHFRMRTEFRIWHERGTAMYVMFSQTDKR 75

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
              I  F  GS  IN LM E+MA +     LR KLFQ+++LTS S+QA++TL+YH+ LD+
Sbjct: 76  PYPIREFPIGSERINQLMPELMALVNRHECLRHKLFQVEFLTSLSNQALITLVYHKPLDE 135

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W   A  LR  L+     +++IGR+ K KI L+RD++ E L V GR   Y+Q+E SFTQ
Sbjct: 136 EWISAATDLRKQLN-----VEIIGRSRKQKILLERDHIIECLKVNGREYRYQQVEGSFTQ 190

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   ML W    T+   GDLLELYCGNGNF+L LA++FDRVLA EI+K SV++A Y
Sbjct: 191 PNARVCEQMLSWAQEQTRHTGGDLLELYCGNGNFTLPLAQNFDRVLATEISKTSVDSALY 250

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N V N++I RMSS+EFTQAM   REFNRLK I ++ YRF TIFVDPPR+GLD AT 
Sbjct: 251 NSRLNQVENLQIARMSSEEFTQAMDGVREFNRLKHISLNDYRFSTIFVDPPRAGLDPATC 310

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            + Q + +I+YISCNP++L  +L  L+ TH I   A FDQFPYT H+ECGVLL R+
Sbjct: 311 HLAQRFDNIVYISCNPETLKDNLQTLTQTHQICTFAAFDQFPYTHHLECGVLLQRR 366


>gi|28871786|ref|NP_794405.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|50401547|sp|Q87WA0|TRMA_PSESM RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|28855038|gb|AAO58100.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 361

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/366 (46%), Positives = 227/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTARLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF     K  + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNKTPILLEGLPIASQRINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LDD W   A +L     A +  + LIGR+   K+ +  DYV E+L VAGRT  
Sbjct: 121 TMCYHRPLDDEWLAAAEQL-----AVELDVSLIGRSKGQKLIIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL+ ID+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLYDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|319637755|ref|ZP_07992521.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa C102]
 gi|317400910|gb|EFV81565.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa C102]
          Length = 361

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/363 (46%), Positives = 244/363 (67%), Gaps = 11/363 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68
           Y+QQLA+K   L+Q+      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 69  ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  INALM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L++AW++    L     A    I +IGR+   KI L +D+V E L V G+T  YRQIE 
Sbjct: 124 KLNEAWQQATQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFCYRQIEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W   A + +  DLLELYCGNGNF+L L++HF++VLA E++K SV 
Sbjct: 179 SFTQPNAQVCQKMLTWACNAAQNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN + N+KI R+S++EFT+A  + REF RL++  ID+ +Y F TIFVDPPR+G
Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ +V  + ++LYISCNP++L  +L  L  THTIER ALFDQFP+T H+E GV L 
Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358

Query: 364 RKP 366
           +K 
Sbjct: 359 KKK 361


>gi|241760255|ref|ZP_04758350.1| tRNA-methyltransferase [Neisseria flavescens SK114]
 gi|241319133|gb|EER55611.1| tRNA-methyltransferase [Neisseria flavescens SK114]
          Length = 360

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/362 (46%), Positives = 244/362 (67%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68
           Y+QQLA+K   L+Q+      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YQQQLADKKQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 69  ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  INALM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L++AW++ A  L     A    I +IGR+   KI L +D+V E L V G+T  YRQIE 
Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFRYRQIEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W   A + +  DLLELYCGNGNF+L L++HF +VLA E++K SV 
Sbjct: 179 SFTQPNAQVCQKMLTWACDAAQNLGKDLLELYCGNGNFTLPLSQHFTQVLATEVSKTSVN 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN + N+KI R+S++EFT+A  + REF RL++  ID+ +Y F TIFVDPPR+G
Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ +V  + ++LYISCNP++L  +L  L  THTIER ALFDQFP+T H+E GV L 
Sbjct: 299 VDDETLKLVARFDNVLYISCNPETLRTNLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|169796179|ref|YP_001713972.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AYE]
 gi|262827608|sp|B0VCX5|TRMA_ACIBY RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|169149106|emb|CAM86983.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AYE]
          Length = 361

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF++D+L + S + +VTL
Sbjct: 61  NGDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L + L+     I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQAAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL+  DIDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|329120742|ref|ZP_08249404.1| tRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327460539|gb|EGF06875.1| tRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 364

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 176/367 (47%), Positives = 240/367 (65%), Gaps = 11/367 (2%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +    Y +QLA+K D LR++     +P   +F S   HYRMRAEF IWH+G    + MF+
Sbjct: 1   MTDSGYARQLADKTDFLRRLFAGVAMPEWAVFPSPERHYRMRAEFRIWHEGGGTSYAMFE 60

Query: 65  QQTK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
              K      +R+  F   S  INALM E++A +  +P+L+ +LFQ ++L++ S   +V+
Sbjct: 61  NGKKAGGASVVRLAQFPAASAAINALMPELLAALSTKPVLKNRLFQCEFLSTLSGDMLVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           LIYHR LDDAW+  A  L+  L      I LIGR+   KI L RD+V E L   GR   Y
Sbjct: 121 LIYHRKLDDAWQAAAQDLQRRL-----GIALIGRSKGQKIVLSRDFVTEELEAGGRIFRY 175

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ E +F+QPNA +   MLEW      G+ GDLLELYCGNGNF+L LARHF RVLA E++
Sbjct: 176 RQPEGAFSQPNAAVCAKMLEWACGCAAGLGGDLLELYCGNGNFTLPLARHFGRVLATEVS 235

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVD 298
           K SV AA++NI A+  +N++I R+S++EF QA    REF RL++  I +  Y F TIFVD
Sbjct: 236 KTSVRAAQWNIEADGADNIRIARLSAEEFAQAYGGGREFRRLREQGISLSDYAFSTIFVD 295

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+G+D+AT+ ++Q + +I+YISCNP++L  +L +L  TH I+  ALFDQFP+T H+E 
Sbjct: 296 PPRAGVDEATLRLMQGFDNIIYISCNPETLRANLDVLLQTHEIKAAALFDQFPFTAHIES 355

Query: 359 GVLLVRK 365
           GVLL RK
Sbjct: 356 GVLLRRK 362


>gi|169633681|ref|YP_001707417.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii SDF]
 gi|213157087|ref|YP_002319132.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB0057]
 gi|215483633|ref|YP_002325854.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|301348206|ref|ZP_07228947.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB056]
 gi|301510993|ref|ZP_07236230.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB058]
 gi|301597930|ref|ZP_07242938.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB059]
 gi|332850564|ref|ZP_08432840.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332865774|ref|ZP_08436569.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6013113]
 gi|262827573|sp|B7H3Q6|TRMA_ACIB3 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262827592|sp|B7I4Y4|TRMA_ACIB5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262827605|sp|B0VR22|TRMA_ACIBS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|169152473|emb|CAP01441.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii]
 gi|213056247|gb|ACJ41149.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii AB0057]
 gi|213988998|gb|ACJ59297.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           AB307-0294]
 gi|332730626|gb|EGJ61940.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332735115|gb|EGJ66199.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6013113]
          Length = 361

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF++D+L + S + +VTL
Sbjct: 61  NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L + L+     I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQAAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL+  DIDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|148549718|ref|YP_001269820.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida F1]
 gi|166988120|sp|A5W926|TRMA_PSEP1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|148513776|gb|ABQ80636.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida F1]
          Length = 361

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/366 (45%), Positives = 229/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y  QL  KV RLR+++  F  P   +F S   HYR+RAEF +W +    ++
Sbjct: 1   MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60

Query: 61  IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF      + + ID F   S  INALM  + A  +    L  +LFQ+++LT+ +  A++
Sbjct: 61  AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LD+AW   A +L +AL      + +IGR+   ++ + RDY  E+L VAGR   
Sbjct: 121 TMCYHRPLDEAWEVEARQLAEAL-----GVSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAMGDREDDLLELYCGNGNFTLPLATRVRQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV++VR+S++E TQA+   R F RL+ ID+ SY+F T+FVDP
Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|293608290|ref|ZP_06690593.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828863|gb|EFF87225.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 361

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K++R+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIERITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM +++  ++ EP L  +LF+ D+L + S + +VTL
Sbjct: 61  NDDDKQKTVVRIDEFPIADQSINDLMPKLLEELKAEPKLSNRLFEADFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W + A  L     A K  I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLDQEWEQAAKAL-----AYKLDIKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q + HI+YISCNPD+L  +L  LS TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFEHIIYISCNPDTLYENLKTLSQTHRLTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|184157892|ref|YP_001846231.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ACICU]
 gi|332872728|ref|ZP_08440694.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6014059]
 gi|262827600|sp|B2HYZ7|TRMA_ACIBC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|183209486|gb|ACC56884.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Acinetobacter baumannii
           ACICU]
 gi|322508211|gb|ADX03665.1| trmA [Acinetobacter baumannii 1656-2]
 gi|323517837|gb|ADX92218.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332739025|gb|EGJ69886.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii
           6014059]
          Length = 361

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/365 (46%), Positives = 242/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYHQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF++D+L + S + +VTL
Sbjct: 61  NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L + L+     I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQEAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL+  DIDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEADIDIQSYDFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q++  I+YISCNP++L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQSFERIIYISCNPNTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|294669701|ref|ZP_06734768.1| hypothetical protein NEIELOOT_01602 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308614|gb|EFE49857.1| hypothetical protein NEIELOOT_01602 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 364

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/362 (47%), Positives = 240/362 (66%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68
           Y QQL +K   LR++     +P  Q+F S   HYRMRAEF IWH+GD + + MF++  K 
Sbjct: 6   YLQQLDDKTALLRRLFSGIPMPEWQVFPSPEQHYRMRAEFRIWHEGDGISYAMFERGQKA 65

Query: 69  ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R+  F   S  IN LM  ++A +  +PLL+ +L+Q ++L++ S + +V+LIYHR
Sbjct: 66  GTASLIRLTDFPAASASINRLMPLLLAELSADPLLKNRLYQCEFLSTLSGEMLVSLIYHR 125

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDD W+  A+ L+  L      I +IGR+   K+ L +D+V E LTV G T  YRQ E 
Sbjct: 126 KLDDGWKHAALALQKKL-----GIFIIGRSKGQKLVLAQDFVTETLTVNGETFRYRQTEG 180

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            FTQPNA +   MLEW     +   GDLLELYCGNGNF+L L+R F RVLA E++K SV+
Sbjct: 181 GFTQPNAAVCEKMLEWTCDCAQTPNGDLLELYCGNGNFTLPLSRRFRRVLATEVSKTSVQ 240

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI+AN  +N++I R+S++EFT+A    REF RL+   ID+  Y F T+FVDPPR+G
Sbjct: 241 AAQWNISANGADNIRIARLSAEEFTEAFNGSREFRRLQKQQIDLAEYGFSTVFVDPPRAG 300

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ ++  +  I+YISCNP++L  +L  L  THT+ER ALFDQFP+T H+E G+LL 
Sbjct: 301 VDDDTLKLLARFDRIIYISCNPETLRANLDALLQTHTVERAALFDQFPFTGHIESGLLLH 360

Query: 364 RK 365
           +K
Sbjct: 361 KK 362


>gi|325272411|ref|ZP_08138803.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas sp. TJI-51]
 gi|324102452|gb|EGB99906.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas sp. TJI-51]
          Length = 361

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/366 (46%), Positives = 229/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y  QL  KV RLR+++  F  P   +F S   HYR+RAEF +W +    ++
Sbjct: 1   MSAAFDPSSYAIQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60

Query: 61  IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF      + + ID F   SL IN LM  + A  +    L  +LFQ+++LT+ +  A++
Sbjct: 61  AMFAPGEKHKAILIDDFPIASLRINELMPRLKAAWQASEALGNRLFQVEFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LD+AW   A +L +AL      + +IGR+   ++ + RDY  E+L VAGR   
Sbjct: 121 TLCYHRPLDEAWEVAARQLSEAL-----SVSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAMGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N VNNV++VR+S++E TQA+   R F RL+ ID+ +Y F T+FVDP
Sbjct: 236 SKTSVNAALSNLDENAVNNVRLVRLSAEELTQALNEVRPFRRLEGIDLKAYDFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L ++++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAQNIAQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|326797231|ref|YP_004315051.1| tRNA (uracil-5-)-methyltransferase [Marinomonas mediterranea MMB-1]
 gi|326547995|gb|ADZ93215.1| tRNA (uracil-5-)-methyltransferase [Marinomonas mediterranea MMB-1]
          Length = 364

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 178/361 (49%), Positives = 246/361 (68%), Gaps = 6/361 (1%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + YEQQL EKVD L+ +M  F +P L +++S   HYRMRAEF +WHDGDD+Y+ MFD +
Sbjct: 8   PELYEQQLDEKVDALKALMAEFSMPELNVYKSAETHYRMRAEFRVWHDGDDMYYAMFDSK 67

Query: 67  T-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
             +  +R+D F   S LIN LM  ++  +R  P+LR KLFQ+D+LT+Q+ +A+++L+YH+
Sbjct: 68  DPRTPIRVDQFPVASKLINELMPALLEAVRHVPILRHKLFQVDFLTTQTGEALISLLYHK 127

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +DD W + A  L  +  A       IGR+ K K  L RD+V E LTV G+   Y+Q+EN
Sbjct: 128 PIDDEWEDAAKELNKSFPA----CHFIGRSRKKKKVLTRDFVMETLTVNGQKYHYQQVEN 183

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNAGI+  MLEW +  T+G  GDLLE+YCGNGNFS+ LAR FD+V+  EIAK SV 
Sbjct: 184 SFTQPNAGISEKMLEWAMDVTQGCSGDLLEMYCGNGNFSIPLARRFDQVIGTEIAKVSVN 243

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGL 304
           +A  NIA N + NV++V+M+S++ + A+  E E  + L    + +     + VDPPR+GL
Sbjct: 244 SASLNIAMNGMKNVQVVKMASEDVSAALNGEGELPKALVQAGMANLSPSVVLVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DDATV +V+    ILYISCNP++L  ++  LS+TH + R ALFDQFPYT H+E GV L R
Sbjct: 304 DDATVELVRKVDKILYISCNPETLKNNMQALSSTHDVTRFALFDQFPYTHHVEAGVFLER 363

Query: 365 K 365
           +
Sbjct: 364 R 364


>gi|213966776|ref|ZP_03394927.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           T1]
 gi|301383285|ref|ZP_07231703.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062476|ref|ZP_07254017.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           K40]
 gi|302133458|ref|ZP_07259448.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213928626|gb|EEB62170.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tomato
           T1]
 gi|331018924|gb|EGH98980.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 361

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/366 (46%), Positives = 227/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF     K  + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNKTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LDD W   A +L     A +  + LIGR+   K+ +  DYV E+L VAGRT  
Sbjct: 121 TMCYHRPLDDEWLAAAEQL-----AVELDVSLIGRSKGQKLIIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL+ +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLYDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|167035640|ref|YP_001670871.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida GB-1]
 gi|189036042|sp|B0KHR5|TRMA_PSEPG RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|166862128|gb|ABZ00536.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida GB-1]
          Length = 361

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/366 (46%), Positives = 229/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y  QL  KV RLR+++  F  P   +F S   HYR+RAEF +W +    ++
Sbjct: 1   MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60

Query: 61  IMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF Q  K + + ID F   S  INALM  + A  +    L  +LFQ+++LT+ +  A++
Sbjct: 61  AMFAQGDKHKAILIDDFPIASQRINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LD+AW   A +L +AL      + +IGR+   ++ + RDY  E L VAGR   
Sbjct: 121 TMCYHRPLDEAWEVEARQLAEAL-----GVSVIGRSKGKRLVIGRDYAIEELDVAGRVFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV++VR+S++E TQA+   R F RL+ ID+ SY F T+FVDP
Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYEFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|254805435|ref|YP_003083656.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha14]
 gi|254668977|emb|CBA07299.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis alpha14]
          Length = 362

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/365 (46%), Positives = 240/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W + A         ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A  R+REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|262831423|sp|A3M4W0|TRMA_ACIBT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|193077167|gb|ABO11954.2| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 361

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/365 (46%), Positives = 241/365 (66%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y QQL  K+DR+      F  P L++F S   H+RMRAEF IWH  +D+++ MF  
Sbjct: 1   MTSSYRQQLQAKIDRITTQFSEFTPPTLEVFESPEQHFRMRAEFRIWHTENDMFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RID F      IN LM  ++A ++   LL  +LF++D+L + S + +VTL
Sbjct: 61  NDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLLSQRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L+  W + A  L + L+     I+++GR+   KI +  D+V E   +  R+  Y+
Sbjct: 121 IYHRKLNQEWEQAAKALAEKLN-----IKIMGRSRGQKIVIGDDFVVEEFELLNRSFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +   ML+W   A +G +  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA + EREF RL++  IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFRRLQEAYIDIQSYDFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +  I+YISCNPD+L  +L  L+ TH + + ALFDQFPYT H+E G
Sbjct: 296 PRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQTHRVTKFALFDQFPYTHHVESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|254673083|emb|CBA07765.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           alpha275]
 gi|261392096|emb|CAX49593.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase; RUMT) [Neisseria
           meningitidis 8013]
 gi|325204641|gb|ADZ00095.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           M01-240355]
          Length = 362

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/365 (46%), Positives = 239/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W + A         ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|309378436|emb|CBX22931.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 367

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/369 (46%), Positives = 236/369 (63%), Gaps = 11/369 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL  K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++   + +VT+I
Sbjct: 61  QKAGGASLIRCDRFDAASEAVNRLMPELIALAAQSAELRNRWYAVEFLSTLGGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W   A  L+  L      I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWIRAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVDPP
Sbjct: 236 SVGAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKEGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D  T+ +V  + +I+YISCNP++L  +L  L  THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDGETLKLVSQFDNIIYISCNPETLRANLDTLVETHTVERAALFDQFPFTPHIESGV 355

Query: 361 LLVRKPSGW 369
           LL +K  G 
Sbjct: 356 LLKKKILGK 364


>gi|254671646|emb|CBA09369.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           alpha153]
          Length = 362

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/365 (46%), Positives = 239/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W + A         ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|325144927|gb|EGC67211.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           M01-240013]
          Length = 362

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/365 (46%), Positives = 236/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W + A         ++    +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWMQAAQA-----LQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           S+ AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SISAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|225075787|ref|ZP_03718986.1| hypothetical protein NEIFLAOT_00803 [Neisseria flavescens
           NRL30031/H210]
 gi|224952869|gb|EEG34078.1| hypothetical protein NEIFLAOT_00803 [Neisseria flavescens
           NRL30031/H210]
          Length = 360

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/362 (46%), Positives = 245/362 (67%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68
           Y+QQLA+K   L+Q+      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YQQQLADKKQYLQQLFQGLDCPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 69  ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  +NALM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESVNALMPKLIEAASNHPELKNRWYAVEFLSTLSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L++AW++ A  L     A    I +IGR+   KI L +D+V E L V G+T  YRQIE 
Sbjct: 124 KLNEAWQQAAQEL-----AHNLGIHIIGRSRGQKIVLSQDFVTEALEVNGKTFRYRQIEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W   A + +  DLLELYCGNGNF+L L++HF++VLA E++K SV 
Sbjct: 179 SFTQPNAQVCQKMLTWACDAAQNLGKDLLELYCGNGNFTLPLSQHFNQVLATEVSKTSVN 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN + N+KI R+S++EFT+A  + REF RL++  ID+ +Y F TIFVDPPR+G
Sbjct: 239 AAQWNIEANQITNLKIARLSAEEFTEAYTQNREFRRLQEQGIDLKNYDFSTIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ +V  + ++LYISCNP++L  +L  L  THTIER ALFDQFP+T H+E GV L 
Sbjct: 299 VDDETLKLVAQFDNVLYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVWLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|296313486|ref|ZP_06863427.1| tRNA (uracil-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
 gi|296840005|gb|EFH23943.1| tRNA (uracil-5-)-methyltransferase [Neisseria polysaccharea ATCC
           43768]
          Length = 367

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 171/369 (46%), Positives = 239/369 (64%), Gaps = 11/369 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K DRL+ +      P  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDRLKTLFAGLDFPEWEVYESPDKHYRMRAEFRIWHEGSEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKASGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W + A         ++  I +IGR+   KI L +DY  E L V  R   YRQ
Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYATETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKITRLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  THT+ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHTVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRKPSGW 369
           LL +K  G 
Sbjct: 356 LLKKKILGK 364


>gi|59801680|ref|YP_208392.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA 1090]
 gi|194099095|ref|YP_002002180.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999401|ref|ZP_04719325.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|240014578|ref|ZP_04721491.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI18]
 gi|240017023|ref|ZP_04723563.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA6140]
 gi|240081341|ref|ZP_04725884.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19]
 gi|240113550|ref|ZP_04728040.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11]
 gi|240116100|ref|ZP_04730162.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18]
 gi|240118384|ref|ZP_04732446.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1]
 gi|240121100|ref|ZP_04734062.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID24-1]
 gi|240123929|ref|ZP_04736885.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332]
 gi|240126129|ref|ZP_04739015.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|240128606|ref|ZP_04741267.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254494120|ref|ZP_05107291.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 1291]
 gi|260440090|ref|ZP_05793906.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|268595221|ref|ZP_06129388.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268597443|ref|ZP_06131610.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268599615|ref|ZP_06133782.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268601766|ref|ZP_06135933.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268604096|ref|ZP_06138263.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268682554|ref|ZP_06149416.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268684715|ref|ZP_06151577.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686994|ref|ZP_06153856.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291043378|ref|ZP_06569101.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|293398682|ref|ZP_06642860.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|75432439|sp|Q5F757|TRMA_NEIG1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|262827706|sp|B4RN45|TRMA_NEIG2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|59718575|gb|AAW89980.1| putative tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           FA 1090]
 gi|193934385|gb|ACF30209.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513160|gb|EEH62505.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 1291]
 gi|268548610|gb|EEZ44028.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae 35/02]
 gi|268551231|gb|EEZ46250.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae FA19]
 gi|268583746|gb|EEZ48422.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae MS11]
 gi|268585897|gb|EEZ50573.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID18]
 gi|268588227|gb|EEZ52903.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID1]
 gi|268622838|gb|EEZ55238.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae PID332]
 gi|268624999|gb|EEZ57399.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268627278|gb|EEZ59678.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291012984|gb|EFE04967.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae DGI2]
 gi|291611153|gb|EFF40250.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae F62]
 gi|317164649|gb|ADV08190.1| tRNA (uracil-5-)-methyltransferase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 362

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/365 (47%), Positives = 240/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL  K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR   + +++L++ S + +VT+I
Sbjct: 61  QKASGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNHWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W + A  L+  L      I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWMKAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+R+F +VLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCRKMLEWACRAAEGLGGDLLELYCGNGNFTLPLSRYFRQVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANWIGNIKIARLSAEEFTEAYTGKREFTRLKESGIVLTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ THT+ R ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLTETHTVGRAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|26991338|ref|NP_746763.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas putida KT2440]
 gi|50401549|sp|Q88E14|TRMA_PSEPK RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|24986400|gb|AAN70227.1|AE016662_3 tRNA (uracil-5-)-methyltransferase [Pseudomonas putida KT2440]
 gi|313500558|gb|ADR61924.1| TrmA [Pseudomonas putida BIRD-1]
          Length = 361

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/366 (45%), Positives = 229/366 (62%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y  QL  KV RLR+++  F  P   +F S   HYR+RAEF +W +    ++
Sbjct: 1   MSAAFDPSSYATQLDAKVARLRELLAPFGAPEPAVFDSPREHYRLRAEFRLWREDGQRHY 60

Query: 61  IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF      + + ID F   S  INALM  + A  +    L  +LFQ+++LT+ +  A++
Sbjct: 61  AMFAPGEKHKAILIDDFPIASERINALMPRLKAAWQASEELGNRLFQVEFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LD+AW   A +L +AL      + +IGR+   ++ + RDY  E+L VAGR   
Sbjct: 121 TMCYHRPLDEAWEVEARQLAEAL-----GVSVIGRSKGKRLVIGRDYAVEKLDVAGRVFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGAVNQKMLSWAFEAIGEREDDLLELYCGNGNFTLPLATRVRQVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV++VR+S++E TQA+   R F RL+ ID+ SY+F T+FVDP
Sbjct: 236 SKTSVNAALSNLDENAVDNVRLVRLSAEELTQALNEVRPFRRLEGIDLKSYQFGTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH IER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLQDTHRIERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|218768699|ref|YP_002343211.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis Z2491]
 gi|304386842|ref|ZP_07369106.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|20178169|sp|Q9JT82|TRMA_NEIMA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|121052707|emb|CAM09050.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis Z2491]
 gi|304339096|gb|EFM05186.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis ATCC
           13091]
 gi|319410932|emb|CBY91327.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase; RUMT) [Neisseria
           meningitidis WUE 2594]
          Length = 362

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/365 (46%), Positives = 236/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W + A         ++    +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWMQAAQA-----LQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFARLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHVVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|325205604|gb|ADZ01057.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           M04-240196]
          Length = 362

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/365 (46%), Positives = 237/365 (64%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFDAASEAVNCLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD W + A         ++    +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDDEWMQAAQA-----LQQQLDTSVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|237801466|ref|ZP_04589927.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024325|gb|EGI04382.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 361

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/366 (45%), Positives = 225/366 (61%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS +     Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVSFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF     K  + ++     S  INALM  +         L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNKTPILLEGLPIASERINALMPVLRERWEASLTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LDD W   A  L   L      + +IGR+   K+ +  DYV E+L VAGRT  
Sbjct: 121 TLCYHRPLDDQWMAEAETLAKEL-----DVSVIGRSKGQKLIIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGEREDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RLK +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLKGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDADTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|308389801|gb|ADO32121.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           alpha710]
          Length = 362

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/365 (46%), Positives = 239/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W + A         ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           S+ AA++NI AN + N+KI R+S++EFT+A  R+REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|330938145|gb|EGH41857.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 361

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 167/366 (45%), Positives = 223/366 (60%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LD  W+    +L   L      + LIGR+   K+ +  DYV E+L VAGRT  
Sbjct: 121 TLCYHRPLDAEWQAAVEQLAAEL-----DVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLASRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|325142850|gb|EGC65218.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           961-5945]
          Length = 362

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 168/365 (46%), Positives = 238/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W + A         ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFHYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE  FTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGGFTQPNAAVCRKMLEWACRAAEGLGGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           S+ AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SISAAQWNIEANGIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|325128707|gb|EGC51571.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis N1568]
 gi|325134787|gb|EGC57424.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M13399]
          Length = 362

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 169/365 (46%), Positives = 238/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y QQL +K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MSDYTQQLQDKKDHLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A       LR + + +++L++ S + +VT+I
Sbjct: 61  QKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD+ W + A         ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           S+ AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|119478185|ref|ZP_01618241.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2143]
 gi|119448694|gb|EAW29938.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2143]
          Length = 380

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 177/358 (49%), Positives = 255/358 (71%), Gaps = 6/358 (1%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-K 68
           Y QQL  K D +      F  P L IF S  +HYR+RAEF IWH+GDD ++ MF++   K
Sbjct: 24  YSQQLQTKADLITSRFADFDAPALTIFNSPALHYRVRAEFKIWHEGDDSFYAMFNKAAPK 83

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           + +RID F  GS LIN+LM ++M+ IR + +LR KLFQ+++LT+ S ++++T+IYH+ L+
Sbjct: 84  QPVRIDTFPIGSELINSLMSKLMSEIRSDSMLRLKLFQVEFLTTLSGESLITMIYHKPLN 143

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D WR  A  L+  L  R     +IGR+ K ++ L +D V E LTV GR  +Y+Q+ENSFT
Sbjct: 144 DDWRRLAEILQQKLDTR-----IIGRSKKQRMVLSQDCVTETLTVDGRQYLYQQVENSFT 198

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPNA +N  ML W L ++  + GDL+ELYCGNGNF+ VLA +FD+VLA EI+K SV++A+
Sbjct: 199 QPNAQVNQKMLSWALTSSADLGGDLVELYCGNGNFTAVLAANFDKVLATEISKTSVKSAQ 258

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +N   N +NNV I RMS++EF+ A+  +R F RLKD+D+ SY F T+ VDPPR+GLD AT
Sbjct: 259 HNFEMNGINNVHIARMSAEEFSSALAGDRTFRRLKDVDLSSYTFSTVLVDPPRAGLDTAT 318

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             ++  + +ILYISCNP++L ++++ L+ TH I ++A+FDQFPYT H+ECG++L ++ 
Sbjct: 319 TQLISRFDNILYISCNPETLYQNVADLNKTHRITKIAIFDQFPYTDHIECGIMLKKRD 376


>gi|325130700|gb|EGC53439.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           OX99.30304]
 gi|325136672|gb|EGC59272.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis M0579]
 gi|325201664|gb|ADY97118.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           M01-240149]
 gi|325208601|gb|ADZ04053.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis
           NZ-05/33]
          Length = 362

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 170/365 (46%), Positives = 239/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL  K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A     P L+ + + +++L++ S + +VT+I
Sbjct: 61  QKASGASMIRCDRFEAASEAVNRLMPELIAAAAQSPELKKRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD  W + A         ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDAEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+RVLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFERVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           S+ AA++NI AN + N+KI R+S++EFT+A  R+REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SISAAQWNIEANRIGNIKIARLSAEEFTEAYTRKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L  TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLVETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|294650226|ref|ZP_06727599.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823883|gb|EFF82713.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 361

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 175/365 (47%), Positives = 245/365 (67%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-- 63
           +   Y+QQL EKV+R+      F  P L++F+S   H+RMRAEF +WH  DDL++ MF  
Sbjct: 1   MTVSYQQQLQEKVERITAQFAPFNPPALEVFQSPEQHFRMRAEFRLWHTDDDLFYAMFER 60

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + K  +RI+ F      IN LM  ++  ++  P+L  ++F+ D+L +   + +VTL
Sbjct: 61  AEDGKQKTVIRINEFPIADQSINDLMPRLLEELKAVPILSQRIFEADFLATLCGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD  W   A  L + L+     I+++GR+   K+ +  DYV E+L V GR   Y+
Sbjct: 121 IYHRRLDSEWEAAAKTLAEKLN-----IKIMGRSRGQKVIVGDDYVVEQLNVHGRIFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE+SFTQPNA +  HMLEW   A +  Q DLLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIESSFTQPNAQVCKHMLEWACDAAQNSQKDLLELYCGNGNFTLPLSLKFNRVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDP 299
            SV AA++NI  N + N+++ R+S++EFTQA + EREF RL++  IDI SY+F TIFVDP
Sbjct: 236 SSVYAAQWNIEQNQIENIQVARLSAEEFTQAYQGEREFRRLQEANIDIQSYQFDTIFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DDAT+ ++Q +  I+YISCNPD+L  +L  L+ TH I + ALFDQFP+T H+E G
Sbjct: 296 PRAGIDDATLTLMQGFERIIYISCNPDTLHDNLKTLTQTHRISKFALFDQFPFTHHIESG 355

Query: 360 VLLVR 364
           VLL +
Sbjct: 356 VLLEK 360


>gi|298369430|ref|ZP_06980748.1| tRNA (uracil-5-)-methyltransferase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283433|gb|EFI24920.1| tRNA (uracil-5-)-methyltransferase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 362

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 163/362 (45%), Positives = 238/362 (65%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68
           Y+QQL +K D L+++      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YQQQLRDKTDYLKKLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 69  ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  INALM +++      P L+ + +  ++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINALMPKLIEAAAQNPELKNRWYAAEFLSALSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L +AW+  A  L     AR+  I +IGR+   KI L + Y+ E L V G+T  YRQ+E 
Sbjct: 124 KLGEAWQRAAEIL-----ARELGIHIIGRSRGQKIVLTQGYITEELNVNGKTFRYRQVEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W     + + GDLLELYCGNGNF+L L+++F +VLA E++K SV 
Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQYFRQVLATEVSKTSVY 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI--HSYRFKTIFVDPPRSG 303
           AA++NI AN  +N+KI R+S++EFT+A  + REF RL++  I    Y F  IFVDPPR+G
Sbjct: 239 AAQWNIEANQRDNIKIARLSAEEFTKAYTQSREFRRLQEQGILLKDYVFSAIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+ T+ +V  + +I+YISCNP++L  +L  L  THT++R ALFDQFP+T H+E GV L 
Sbjct: 299 VDEETLKLVSQFDNIIYISCNPETLRANLDTLCRTHTVKRAALFDQFPFTHHIESGVWLE 358

Query: 364 RK 365
           RK
Sbjct: 359 RK 360


>gi|15677527|ref|NP_274683.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis MC58]
 gi|20178170|sp|Q9JYA0|TRMA_NEIMB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|7226932|gb|AAF42027.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis MC58]
 gi|316984826|gb|EFV63783.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis H44/76]
 gi|325140858|gb|EGC63368.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis CU385]
 gi|325199727|gb|ADY95182.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis H44/76]
          Length = 362

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 168/365 (46%), Positives = 238/365 (65%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL  K D L+ +     VP  +++ S   HYRMRAEF IWH+G ++++ MF++ 
Sbjct: 1   MNDYTQQLQGKKDYLKTLFAGLDVPEWEVYESPDKHYRMRAEFRIWHEGGEMFYAMFEKG 60

Query: 67  TKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            K      +R D F   S  +N LM E++A     P L+ + + +++L++ S + +VT+I
Sbjct: 61  QKASGASMIRCDRFEAASEAVNRLMPELIAAAAQSPELKKRWYAVEFLSTLSGEMLVTMI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LD  W + A         ++  I +IGR+   KI L +DYV E L V  R   YRQ
Sbjct: 121 YHKRLDAEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKVGNRDFRYRQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPNA +   MLEW     +G+  DLLELYCGNGNF+L L+R+F +VLA EI+K 
Sbjct: 176 IEGSFTQPNAAVCQKMLEWACRTAEGLGSDLLELYCGNGNFTLPLSRYFRQVLATEISKT 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y F TIFVDPP
Sbjct: 236 SVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYAFSTIFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ TH +ER ALFDQFP+T H+E GV
Sbjct: 296 RAGIDEETLKLVSQFDNIIYISCNPETLRANLDTLAETHAVERAALFDQFPFTHHIESGV 355

Query: 361 LLVRK 365
           LL +K
Sbjct: 356 LLKKK 360


>gi|307545640|ref|YP_003898119.1| tRNA (uracil-5-)-methyltransferase [Halomonas elongata DSM 2581]
 gi|307217664|emb|CBV42934.1| tRNA (uracil-5-)-methyltransferase [Halomonas elongata DSM 2581]
          Length = 368

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/363 (47%), Positives = 236/363 (65%), Gaps = 11/363 (3%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD---- 64
           +Y++QL  K  RL +    F  P L+++ S P HYR R EF +WH+GDDL++ MF+    
Sbjct: 10  RYDEQLDAKRARLVETFAPFAPPALEVYPSPPSHYRQRCEFRLWHEGDDLFYAMFEVDPD 69

Query: 65  -QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
               K  +R+D +      IN LM  ++  +R  P+LR KLFQ+++LT+ S +A+VTLIY
Sbjct: 70  EPGKKRVVRLDDYPVAGRRINELMPRLLDAVRDRPVLRHKLFQVEFLTTLSGEALVTLIY 129

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LD+ W E A  L  AL      I +IGRA K +  L RD+V E L V GR L Y+Q+
Sbjct: 130 HRQLDEDWDEAARELEQAL-----DIMIIGRARKQRRVLTRDHVWECLEVDGRRLHYQQV 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           ENSFTQPNA I   ML W    T G Q  DL+ELYCGN NF++ LA +F RVLA EI++ 
Sbjct: 185 ENSFTQPNAEICRAMLTWARDVTAGSQQRDLVELYCGNANFTVALADNFRRVLATEISRT 244

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV +AR N+ AN ++NV + RMS++EFTQA++ ++   R++   +  Y F T+ VDPPR+
Sbjct: 245 SVASARENLEANGIDNVTVGRMSAEEFTQALKGDKGGRRVEAWALDEYDFSTVLVDPPRA 304

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD+A+   +  Y  I+YISCNPD+L  +L  L+ TH + R ALFDQFP+T H ECGVLL
Sbjct: 305 GLDEASCRQLSEYERIVYISCNPDTLAHNLETLTQTHAVTRFALFDQFPWTHHCECGVLL 364

Query: 363 VRK 365
            R+
Sbjct: 365 ERR 367


>gi|87121190|ref|ZP_01077081.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121]
 gi|86163682|gb|EAQ64956.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121]
          Length = 367

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 178/361 (49%), Positives = 247/361 (68%), Gaps = 6/361 (1%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           IDQY+ QLAEK+ RL ++M    +P  +IF SE  HYRMRAEF IWHDGDD+Y+ MFD  
Sbjct: 8   IDQYQPQLAEKISRLDELMATLDLPAAEIFESEASHYRMRAEFRIWHDGDDMYYAMFDSN 67

Query: 67  T-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
             +  +R+D F   S LIN LM  ++  ++  P+LR KLFQ+D+LT+Q+ +A+++++YH+
Sbjct: 68  DPRTPIRVDQFPVASELINELMPALLDAVKTVPVLRHKLFQVDFLTTQTGEALISMLYHK 127

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +D+ W   A  L +A          IGR+ K K+ L RD+V E LTV G+   Y+Q+EN
Sbjct: 128 PIDEDWFAAAQTLNEAFP----HCHFIGRSRKKKMILTRDFVMETLTVNGKKYHYQQVEN 183

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNAGIN  ML W L  T+   GDLLE+YCGNGNFS+ LAR FDRV+A EI+K SV 
Sbjct: 184 SFTQPNAGINESMLSWALDVTQNESGDLLEMYCGNGNFSIPLARRFDRVVATEISKVSVN 243

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGL 304
           +A+ NIA N ++NV++V+M+S++ + A+  + E  + L    + S     + VDPPR+GL
Sbjct: 244 SAQLNIAINGMSNVQVVKMASEDVSAALNGQTELPKQLIQAGMESLEPSVVLVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  TV +++    ILYISCNP++L  +L  LS TH++ER A+FDQFPYT H+E GV LVR
Sbjct: 304 DSDTVELIRKVDKILYISCNPETLKANLDALSDTHSVERYAVFDQFPYTHHIETGVYLVR 363

Query: 365 K 365
           +
Sbjct: 364 R 364


>gi|330873496|gb|EGH07645.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 361

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/366 (45%), Positives = 223/366 (60%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPKPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASQRINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR L+D W   A  L   L      + LIGR+   ++ +  DYV E+L VAGRT  
Sbjct: 121 TMCYHRPLNDEWLAEAEALAKEL-----DVSLIGRSRGQRLVIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL+ ID+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLL R+
Sbjct: 356 VLLARR 361


>gi|330961636|gb|EGH61896.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 361

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 168/366 (45%), Positives = 225/366 (61%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGENRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LDDAW+  A        A+   + LIGR+   K+ +  DYV E+L VA RT  
Sbjct: 121 TMCYHRPLDDAWQAEAEA-----LAQALDVSLIGRSKGQKLVIGHDYVTEKLDVASRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAYDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N VNNV +VR+S++E T+A+   R F RL+ +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVNNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYEFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|261363848|ref|ZP_05976731.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
 gi|288568441|gb|EFC90001.1| tRNA (uracil-5-)-methyltransferase [Neisseria mucosa ATCC 25996]
          Length = 360

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 167/362 (46%), Positives = 242/362 (66%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68
           Y QQL +K+  L+Q+      P +Q+F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YTQQLDQKIQYLQQLFQGLDFPEIQVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 69  ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  IN LM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINTLMPKLIEAATQNPELKKRWYAVEFLSALSSEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD+AW+  A  L     AR+  I +IGR+   KI L +DY+ E L V G+T  YRQ+E 
Sbjct: 124 KLDEAWQRAAETL-----ARELGIHIIGRSRGQKIVLTQDYITEELNVNGKTFRYRQVEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W     + + GDLLELYCGNGNF+L L++HF +VLA E++K SV 
Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQHFHQVLATEVSKTSVY 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN  +N+KI R+S++EFT+A  + R+F+RL++  + +  Y F TIFVDPPR+G
Sbjct: 239 AAQWNIEANQRDNIKIARLSAEEFTEAYTQSRKFHRLQEQGVSLKDYGFSTIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DD T+ +V  + +I+YISCNP++L  +L  L  THTIER ALFDQFP+T H+E GV L 
Sbjct: 299 VDDETLKLVSQFDNIIYISCNPETLRANLDTLCQTHTIERAALFDQFPFTHHIESGVYLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|71734845|ref|YP_276461.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482160|ref|ZP_05636201.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289625706|ref|ZP_06458660.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647718|ref|ZP_06479061.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|123635080|sp|Q48DT0|TRMA_PSE14 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|71555398|gb|AAZ34609.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|115265670|dbj|BAF32931.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           phaseolicola]
 gi|320322638|gb|EFW78731.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330577|gb|EFW86556.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330868981|gb|EGH03690.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330987567|gb|EGH85670.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011373|gb|EGH91429.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 361

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/366 (45%), Positives = 225/366 (61%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LD  W+  A +      A +  + LIGR+   K+ + +DYV E+L VAGRT  
Sbjct: 121 TMCYHRPLDAEWQAAAEQ-----LAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|330888777|gb|EGH21438.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 361

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/366 (45%), Positives = 225/366 (61%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LD  W+  A +      A +  + LIGR+   K+ + +DYV E+L VAGRT  
Sbjct: 121 TMCYHRPLDAEWQAAAEQ-----LAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALNNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|330952946|gb|EGH53206.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae Cit 7]
          Length = 361

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 167/366 (45%), Positives = 224/366 (61%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LD  W+  A +      A +  + LIGR+   K+ +  DYV E+L VAGRT  
Sbjct: 121 TLCYHRPLDAEWQAAAEQ-----LAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPETCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|229517004|ref|ZP_04406450.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC9]
 gi|229346067|gb|EEO11039.1| tRNA (uracil-5-)-methyltransferase [Vibrio cholerae RC9]
          Length = 372

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 182/333 (54%), Positives = 246/333 (73%), Gaps = 2/333 (0%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   MLEW +  T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEA
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGL 304
           A++NIAAN + NV+I+RMS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+
Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILST 337
           D  T  MVQ Y  ILYISCNP++L  +L +L  
Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGG 340


>gi|330969518|gb|EGH69584.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 361

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 167/366 (45%), Positives = 224/366 (61%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LD  W+  A +      A +  + LIGR+   K+ +  DYV E+L VAGRT  
Sbjct: 121 TLCYHRPLDAEWQAAAEQ-----LAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|262370456|ref|ZP_06063782.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter johnsonii SH046]
 gi|262314798|gb|EEY95839.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter johnsonii SH046]
          Length = 360

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 168/364 (46%), Positives = 242/364 (66%), Gaps = 10/364 (2%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +   Y+QQL  K++R+      F  P+L++F+S   H+RMRAEF IWH  DD+++ MF++
Sbjct: 1   MTSSYQQQLDAKIERITAQFAEFTPPSLEVFQSPEKHFRMRAEFRIWHTEDDMFYAMFER 60

Query: 66  Q---TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
                K+ +RID F      IN LM  ++A ++   LL  +LF++ +L +   + +V+LI
Sbjct: 61  DEDNQKKVIRIDDFPIADASINQLMPVLLAELKSNDLLSKRLFEVHFLATLKGEMLVSLI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           Y   LD+ W+  A +L + L+     I+LIGR+   K+ L  ++V E L V  R   Y+Q
Sbjct: 121 YRCPLDEQWQVLAKQLSEKLN-----IKLIGRSRGQKVVLTDEFVVEELQVFERKYQYKQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE+SFTQPNA +   MLEW   A +    DLLELYCGNGNF+L L+  F+RVLA E+AK 
Sbjct: 176 IESSFTQPNAQVCQKMLEWACNAAQQSNKDLLELYCGNGNFTLPLSTRFNRVLATELAKS 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA++NI  NH++N+++ R+S+++FTQA   EREF RL++  ID+ SY F T+FVDPP
Sbjct: 236 SVYAAQWNIEQNHIDNIQVARLSAEDFTQAYNGEREFRRLQEANIDMSSYEFDTVFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+DD T+ ++Q +  I+YISCNPD+L  +L  LS TH I + ALFDQFPYT H+E GV
Sbjct: 296 RAGIDDETLKLIQRFERIIYISCNPDTLHDNLKTLSQTHKISQFALFDQFPYTHHVESGV 355

Query: 361 LLVR 364
           LL +
Sbjct: 356 LLEK 359


>gi|331005274|ref|ZP_08328666.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium
           IMCC1989]
 gi|330420951|gb|EGG95225.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium
           IMCC1989]
          Length = 384

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 168/366 (45%), Positives = 243/366 (66%), Gaps = 10/366 (2%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           ++  +QY+ QL  K+ RL+Q +      + P +++F S   HYRMRAEF +WH+G+  ++
Sbjct: 24  SVFPEQYQAQLDTKITRLQQQLSEISSVEFPEIEVFESATEHYRMRAEFKVWHEGETSHY 83

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
            M D++TK+ + +  F   S  IN LM  ++A I    +LR KLFQI++LT+ ++  +VT
Sbjct: 84  AMSDKETKKPIFLTEFPVASQSINTLMPLLLAEINRCDVLRKKLFQIEFLTTLTEDMLVT 143

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
            IYH  L + W E    +++     ++ + +IGR+ K KI LDR YV+E L V  RT  Y
Sbjct: 144 FIYHHPLSEKWVEKITPIKE-----QFSLNIIGRSRKQKIVLDRAYVNEELEVNKRTYSY 198

Query: 181 RQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           +Q E SFTQPNA +   ML W +  +A+   + DLLELYCGNGNF+L LA++F +V+A E
Sbjct: 199 QQNEGSFTQPNAKVCEKMLSWAVKKSASAEPKKDLLELYCGNGNFTLPLAQNFRQVMATE 258

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K SV +A+ NI  N++ NV IVRMSS++F++AM + R F RLKDID+ SY F T+FVD
Sbjct: 259 ISKSSVYSAQENIRRNNIENVTIVRMSSEDFSEAMDKVRPFRRLKDIDLDSYDFSTVFVD 318

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPR+GLD  T+ M+Q +  I+Y+SCNP +L  +L  L  TH++  LA FDQFPYT H+E 
Sbjct: 319 PPRAGLDQHTLQMIQKFDTIIYVSCNPTTLVENLHQLCKTHSVTDLAAFDQFPYTDHLES 378

Query: 359 GVLLVR 364
            V+L R
Sbjct: 379 AVILKR 384


>gi|302189046|ref|ZP_07265719.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           syringae 642]
          Length = 361

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/366 (45%), Positives = 224/366 (61%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LD  W+  A +      A +  + LIGR+   K+ +  DYV E+L VAGRT  
Sbjct: 121 TMCYHRPLDAEWQAAAEQ-----LAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|289675862|ref|ZP_06496752.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           syringae FF5]
          Length = 361

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 167/366 (45%), Positives = 224/366 (61%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGENRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LD  W+  A +      A +  + LIGR+   K+ +  DYV E+L VAGRT  
Sbjct: 121 TLCYHRPLDAEWQAAAEQ-----LAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|330967678|gb|EGH67938.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 359

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 166/364 (45%), Positives = 222/364 (60%), Gaps = 6/364 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL +K  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEKKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASQRINALMQVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LDD W   A  L   L      + LIGR+   ++ +  DYV E+L VAGRT  
Sbjct: 121 TMCYHRPLDDEWLAEAEALAKEL-----DVSLIGRSRGQRLVIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL+ ID+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLV 363
           VLLV
Sbjct: 356 VLLV 359


>gi|262376153|ref|ZP_06069383.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter lwoffii SH145]
 gi|262308754|gb|EEY89887.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter lwoffii SH145]
          Length = 360

 Score =  382 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 169/364 (46%), Positives = 238/364 (65%), Gaps = 10/364 (2%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +   Y+QQL  K++R+      +Q P L++F+S   ++RMRAEF IWH  DDL++ MF++
Sbjct: 1   MTSSYQQQLDAKIERISAQFAEYQPPALEVFQSPEKYFRMRAEFRIWHTEDDLFYAMFER 60

Query: 66  Q---TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
                K+ +RID F      IN LM +++   + +  L  +LF++ +L + S Q +V+LI
Sbjct: 61  DENNNKKVIRIDEFPIADRSINDLMPQLLEAFKADANLGHRLFEVHFLATLSGQVLVSLI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD++W   A  L + L+     I+LIGR+   K  L  +YV E L+V  R   Y+Q
Sbjct: 121 YHRKLDESWEPAAKALAEKLN-----IKLIGRSRGQKFVLTDEYVVEELSVFDRRYKYKQ 175

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE+SFTQPNA +   MLEW   A +    DLLELYCGNGNF+L L+  F RVLA E+AK 
Sbjct: 176 IESSFTQPNAQVCQKMLEWACDAAEQSDKDLLELYCGNGNFTLPLSTKFRRVLATELAKS 235

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPP 300
           SV AA +NI  N + N+++ R+S++EFTQA   ER F RL++  IDI +Y F T+FVDPP
Sbjct: 236 SVYAAEWNIEQNQIENIQVARLSAEEFTQAYNGERVFRRLQEAQIDISTYDFDTVFVDPP 295

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+G+DD T+ ++Q +  I+YISCNPD+L  +L  LS TH I + A+FDQFPYT H+E GV
Sbjct: 296 RAGIDDETLKLLQRFQRIIYISCNPDTLYDNLKQLSQTHRISKFAMFDQFPYTHHVETGV 355

Query: 361 LLVR 364
           LL +
Sbjct: 356 LLEK 359


>gi|77461119|ref|YP_350626.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf0-1]
 gi|123603199|sp|Q3K6G9|TRMA_PSEPF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|77385122|gb|ABA76635.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 359

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/363 (45%), Positives = 224/363 (61%), Gaps = 6/363 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T     Y  QL +KV RLR ++  F  P   +F S   ++R+RAEF +W +G + ++ MF
Sbjct: 2   TFDSQAYAAQLEDKVTRLRDLLAPFDAPEPTVFDSPLQNFRLRAEFRLWREGGERHYAMF 61

Query: 64  DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            Q  K   + I+ F   SL IN LM ++ A  +    L  KLFQ+++LT+ +  A++TL 
Sbjct: 62  SQDDKRTPILIEEFPIASLRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLC 121

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W   A +L   L      + +IGR+   +  L  DYV E+L V GRT  YRQ
Sbjct: 122 YHRPLDEHWHAAATKLATDL-----GVSIIGRSKGKREVLGLDYVVEKLDVGGRTFSYRQ 176

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            E +FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K 
Sbjct: 177 PEGAFTQPNGTVNQKMLNWAYEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKT 236

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV AA  N+A N V+NV +VR+S++E T+A+   R F RL  ID+ SY F ++FVDPPR+
Sbjct: 237 SVNAALSNLAENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRA 296

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T  + + + +ILYISCNP++L  +++ L  TH I R ALFDQFP+T HME GVLL
Sbjct: 297 GMDPDTCELTRRFDNILYISCNPETLAANIAQLHDTHRITRCALFDQFPWTHHMESGVLL 356

Query: 363 VRK 365
            R+
Sbjct: 357 TRR 359


>gi|94500651|ref|ZP_01307181.1| tRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
 gi|94427206|gb|EAT12186.1| tRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
          Length = 361

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/361 (46%), Positives = 234/361 (64%), Gaps = 6/361 (1%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             +Y  QL EKV R+ +   +F +PN+++F S P H+R RAEF +WHDGD  +H MF+  
Sbjct: 6   TSEYSSQLNEKVTRIHKQFSSFAIPNIEVFESVPQHFRQRAEFRVWHDGDSCFHAMFEPG 65

Query: 67  TK-ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            K + ++I +F   S  I  LM +MM  I    LL+ KLFQI+YL + S   +VTLIYH+
Sbjct: 66  KKNDPIKIVHFDIASEAICELMPKMMERINDSHLLKHKLFQIEYLGTSSGDMLVTLIYHK 125

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            + + W E A  ++D L      I +IGRA K ++ LD+D+V E L V G+ + Y+Q+E 
Sbjct: 126 PITEEWIEKASAIKDEL-----GIHIIGRARKMRVPLDQDFVIETLEVDGKPIHYKQVEA 180

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA IN  ML W          DLLELYCGNGNFSL LA  + RV+A EI+K SV+
Sbjct: 181 SFTQPNAYINQKMLSWARKQNCDSDRDLLELYCGNGNFSLALADRYRRVVATEISKTSVK 240

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           AA    A N+++NV   R+S++EFT+ M+  ++  RL+D+ + S  F T+ VDPPR+GLD
Sbjct: 241 AALDGKAMNNIDNVDFARVSAEEFTEHMKGGKQRRRLQDMGLESADFGTVLVDPPRAGLD 300

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  ++  Y +I+YISCNPD+L  +L  LS TH IE  A+FDQFPYT H+ECGV L R+
Sbjct: 301 EDSCQLISEYDNIIYISCNPDTLQDNLEQLSKTHHIESFAVFDQFPYTHHIECGVYLTRR 360

Query: 366 P 366
            
Sbjct: 361 N 361


>gi|255065084|ref|ZP_05316939.1| tRNA (uracil-5-)-methyltransferase [Neisseria sicca ATCC 29256]
 gi|255050505|gb|EET45969.1| tRNA (uracil-5-)-methyltransferase [Neisseria sicca ATCC 29256]
          Length = 360

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/362 (44%), Positives = 238/362 (65%), Gaps = 11/362 (3%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68
           Y QQL +K+  L+Q+      P +++F S   HYRMRAEF IWH+G ++++ MF++  K 
Sbjct: 4   YTQQLDQKIQYLQQLFQGLDFPEIEVFESPEQHYRMRAEFRIWHEGGEMFYAMFERGQKA 63

Query: 69  ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +R D F   S  INALM +++      P L+ + + +++L++ S + +VT+IYH+
Sbjct: 64  SGASLIRCDQFPAASESINALMPKLIEAAAQNPELKNRWYAVEFLSALSGEMLVTMIYHK 123

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L +AW+  A  L     AR+  I +IGR+   KI L +DY+ E L V G+T  YRQ+E 
Sbjct: 124 KLGEAWQRAAETL-----ARELGIHIIGRSRGQKIVLTQDYITEELNVNGKTFRYRQVEG 178

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNA +   ML W     + + GDLLELYCGNGNF+L L++HF +VLA E++K SV 
Sbjct: 179 SFTQPNARVCEKMLGWACDVAQNLSGDLLELYCGNGNFTLPLSQHFRQVLATEVSKTSVY 238

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA++NI AN  +N+KI R+S++EFT+A  + REF RL++  I +  Y F  IFVDPPR+G
Sbjct: 239 AAQWNIEANRRDNIKIARLSAEEFTEAYTQSREFRRLQEQGISLKDYGFSAIFVDPPRAG 298

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +D+ T+ +V  + +I+YISCN ++L  +L  L  TH ++R ALFDQFP+T H+E GV L 
Sbjct: 299 VDEETLKLVSQFDNIIYISCNLETLRANLDTLCRTHAVKRAALFDQFPFTHHIESGVYLK 358

Query: 364 RK 365
           +K
Sbjct: 359 KK 360


>gi|152998306|ref|YP_001343141.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MWYL1]
 gi|189036041|sp|A6W3C7|TRMA_MARMS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|150839230|gb|ABR73206.1| tRNA (uracil-5-)-methyltransferase [Marinomonas sp. MWYL1]
          Length = 366

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 175/363 (48%), Positives = 244/363 (67%), Gaps = 6/363 (1%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ- 65
            + YE+QL +K   L ++M    +P +++F S+P HYRMRAEF IWHDGDDLY+ MFD  
Sbjct: 8   PEMYEKQLQDKQAELAKLMATLSLPEMEVFASQPTHYRMRAEFRIWHDGDDLYYAMFDSA 67

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
             +  +R D F+  S LIN LM +++  +R  P+LR KLFQ+D+LT+ + +A+++L+YH+
Sbjct: 68  DPRTPIRTDQFLAASRLINELMPKLLDAVRDVPVLRYKLFQVDFLTTTTGEALISLLYHK 127

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +D  W     +L +A  A       IGR+ K K  + RD+V E LTV G+   Y+Q+EN
Sbjct: 128 PIDAEWNAAVQQLNNAFPA----CHFIGRSRKKKQIITRDFVMETLTVNGQKFHYQQVEN 183

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SFTQPNAGI+  MLEW L  TK   GDLLE+YCGNGNFS+ LAR FDRV+A EI+K SV 
Sbjct: 184 SFTQPNAGISEKMLEWALDVTKEASGDLLEMYCGNGNFSIPLARRFDRVVATEISKVSVN 243

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSGL 304
           +A+ NIA N ++NV++V+M+S++ + A+  + E  + L    +       + VDPPR+GL
Sbjct: 244 SAQLNIAINGMHNVQVVKMASEDVSAALNGDVELPKSLVQAGVSELTPSVVLVDPPRAGL 303

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           DDATV +++    ILYISCNP++L  +L  LS TH + R A+FDQFPYT H+E GV L R
Sbjct: 304 DDATVELIRKIDSILYISCNPETLKANLEALSNTHEVVRYAMFDQFPYTHHVETGVFLRR 363

Query: 365 KPS 367
           K S
Sbjct: 364 KAS 366


>gi|85711838|ref|ZP_01042893.1| tRNA (uracil-5-)-methyltransferase [Idiomarina baltica OS145]
 gi|85694235|gb|EAQ32178.1| tRNA (uracil-5-)-methyltransferase [Idiomarina baltica OS145]
          Length = 368

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/362 (46%), Positives = 244/362 (67%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T+   +Y  Q AEK   L+Q++  +    L++  S   HYRMRAEF +WH+ +DLY+IMF
Sbjct: 5   TIDPSEYPLQFAEKAKHLQQLLSPYYKGELELHESPRTHYRMRAEFRVWHEQNDLYYIMF 64

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           + +T+E++R+D F+PGS LIN LM  +   +  +P+LR KLFQ+D+LT+ +++A+++ +Y
Sbjct: 65  NPETREKIRMDEFVPGSGLINTLMKAVRDYVIDKPILRNKLFQVDFLTTTTNEAVISCLY 124

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H+ LD  W E A ++ + L     ++ LIGRA K K  +  D V E L +  R     Q 
Sbjct: 125 HKQLDAEWEESAKQMHETLSPITDKLGLIGRARKQKHVIGTDEVVECLNIGNRHWKTVQT 184

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           EN+FTQPNA IN  M+ W + +    + DLLELYCGNGNF+L L+  F+ VLA EI+K S
Sbjct: 185 ENAFTQPNAEINKQMITWAINSVGTPKHDLLELYCGNGNFTLPLSTQFEHVLATEISKRS 244

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V +A+     N +NNV+ VRMSS+EF++A++ + E  RL++ID+ SY F T+ VDPPR+G
Sbjct: 245 VASAQVATEMNGINNVEFVRMSSEEFSEALKGDVEKRRLQNIDLTSYDFGTVLVDPPRAG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD  T+ +V  Y  ILYISCNPD+L ++++ LS   T+ + ALFDQFPYT H+E GVLL 
Sbjct: 305 LDALTLNVVSQYQRILYISCNPDTLIQNINDLSDKFTVTKAALFDQFPYTHHIEAGVLLE 364

Query: 364 RK 365
           RK
Sbjct: 365 RK 366


>gi|226942928|ref|YP_002798001.1| tRNA (uracil-5-)-methyltransferase [Azotobacter vinelandii DJ]
 gi|259547819|sp|C1DLS8|TRMA_AZOVD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|226717855|gb|ACO77026.1| tRNA (uracil-5-)-methyltransferase [Azotobacter vinelandii DJ]
          Length = 361

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 160/360 (44%), Positives = 220/360 (61%), Gaps = 7/360 (1%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
              Y+ QLA+K  RL  ++  F  P  ++F S   HYR+RAEF +W +G+  ++ MFD  
Sbjct: 8   PSHYDAQLADKQARLSGLLAPFAAPEPEVFDSPREHYRLRAEFRLWREGEARHYAMFDPG 67

Query: 67  TKER-MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            K + + +D F   S  IN LM  + A       L  KLFQ+++LT+ +  A++TL YHR
Sbjct: 68  DKRKPILLDDFPIASERINDLMPRLKAAWE-NAALGFKLFQVEFLTTLAGDALITLCYHR 126

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD  W+  A RL   L      + ++GR+   ++ + RDYV+E L VAGR   YRQ E 
Sbjct: 127 PLDTFWQTAAERLAAEL-----GVSIVGRSRGQRLVVGRDYVEEELEVAGRRFRYRQPEG 181

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           +FTQPN  +   ML W          DLLELYCGNGNF+L LA    RVLA EI+K SV 
Sbjct: 182 AFTQPNGVVCRKMLNWAHDVLGERDDDLLELYCGNGNFTLPLATRVRRVLATEISKTSVN 241

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           AA  N+ +N V+NV +VR+S++E TQA+   R F RL  +D+  Y F ++FVDPPR+G+D
Sbjct: 242 AALTNLESNGVDNVTLVRLSAEELTQALNEVRPFRRLAGVDLKGYDFGSLFVDPPRAGMD 301

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             T  + + +  ILYISCNP++L  +++ L  TH + R ALFDQFPYT HME GVLL R+
Sbjct: 302 PDTCELARRFGRILYISCNPETLAANIARLHDTHRVVRCALFDQFPYTHHMESGVLLERR 361


>gi|325266048|ref|ZP_08132734.1| tRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC
           33394]
 gi|324982686|gb|EGC18312.1| tRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC
           33394]
          Length = 391

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/366 (45%), Positives = 231/366 (63%), Gaps = 15/366 (4%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK- 68
           Y  QL  K+ RL  ++  F  P +++F S    YRMRAEF IWH+G  + + MF+  +K 
Sbjct: 31  YNTQLNAKIQRLHTLLAPFGAPEIEVFASAEQGYRMRAEFRIWHEGGAMNYAMFEPGSKA 90

Query: 69  ---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                +++  F P    INALM  ++  +  + + R +L+Q ++L + S + +VTLIYH+
Sbjct: 91  SSASLIKLAQFPPAHERINALMPRLLDALSQQDVFRHRLYQCEFLCTLSGEMLVTLIYHK 150

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDD W++ A  L+DAL      I +IGR+   KI L  DYV E LTV G+T  YRQ+E 
Sbjct: 151 RLDDEWQKAACTLQDAL-----GISIIGRSRGQKIVLREDYVTETLTVCGQTYRYRQLEG 205

Query: 186 SFTQPNAGINVHMLEWVLA----ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            FTQPNA +   MLEW  A    A      DLLELYCGNGNF+L L+R F RVLA E++K
Sbjct: 206 GFTQPNARVCEKMLEWACAQAEKAACTPPRDLLELYCGNGNFTLPLSRRFRRVLATEVSK 265

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH--SYRFKTIFVDP 299
            SV AA++NI AN  +N+ I R+S++EFT+A    R+F RL    I    Y F TIF+DP
Sbjct: 266 TSVAAAQWNIQANGTDNIAIARLSAEEFTEAYTGARDFQRLTAQGIRLSDYDFSTIFIDP 325

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T+ +V  +  I+Y+SCNPD+L  +L  L+ THT++  ALFDQFP+T H+E G
Sbjct: 326 PRAGVDSETLKLVAQFESIIYVSCNPDTLADNLQTLTQTHTVQAAALFDQFPFTPHIESG 385

Query: 360 VLLVRK 365
           VLL +K
Sbjct: 386 VLLAKK 391


>gi|20178175|sp|Q9RHS9|TRMA_PSEFL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|6624218|dbj|BAA88495.1| (uracil-5-)methyltransferase [Pseudomonas fluorescens]
          Length = 363

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/363 (44%), Positives = 226/363 (62%), Gaps = 6/363 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T     Y  QL +KV RLR ++  F  P  Q+F S   ++R+RAEF +W +G + ++ MF
Sbjct: 6   TFDAASYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMF 65

Query: 64  DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            Q  K   + I+ F   SL IN LM ++ A  +    L  KLFQ+++LT+ +  A++TL 
Sbjct: 66  SQDDKRTPILIEEFPIASLRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLC 125

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W   A +L   L+     + +IGR+   +  + RDYV E+L V GRT  YRQ
Sbjct: 126 YHRPLDEHWHTAANKLAADLN-----VSIIGRSKGKRDVIGRDYVVEKLDVGGRTFSYRQ 180

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            E +FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K 
Sbjct: 181 PEGAFTQPNGTVNQKMLNWAFEALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKT 240

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  ID+ SY F ++FVDPPR+
Sbjct: 241 SVNAALSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRA 300

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T  + + + +ILYISCNP++L  +++ L  TH I + A+FDQFP+T HME GVLL
Sbjct: 301 GMDPDTCELTRRFENILYISCNPETLAANIAQLHDTHRITQCAMFDQFPWTHHMESGVLL 360

Query: 363 VRK 365
            R+
Sbjct: 361 TRR 363


>gi|258545841|ref|ZP_05706075.1| tRNA (uracil-5-)-methyltransferase [Cardiobacterium hominis ATCC
           15826]
 gi|258518857|gb|EEV87716.1| tRNA (uracil-5-)-methyltransferase [Cardiobacterium hominis ATCC
           15826]
          Length = 354

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 169/358 (47%), Positives = 231/358 (64%), Gaps = 9/358 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y+ QL +K  RLR ++  F  P  +IF S P  YRMRAEF +WHDGD+ +  M     K 
Sbjct: 4   YQSQLDDKTRRLRALLAPFAAPEAEIFPSPPEGYRMRAEFRVWHDGDNCHFAMTGADGK- 62

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            +RID F P    IN LM  ++  +   P LR +LFQ ++ T+Q+ + +++LIYHR LDD
Sbjct: 63  PLRIDTFPPAHAAINRLMPRVITALHDRPALRHRLFQAEFQTTQAGETMLSLIYHRPLDD 122

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           AW+E A        A +  + LIGRA + K  + +D++ E   V GR   YRQ ENSF+Q
Sbjct: 123 AWQEAAEA-----LAAERGVHLIGRARREKRIIGQDHITETFCVGGRDYHYRQYENSFSQ 177

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +  HML+W  A   G + DLLELYCGNGNF+L LA  + RVLA E++K  + A R 
Sbjct: 178 PNATVCQHMLDWATA-QAGSRADLLELYCGNGNFTLPLAARYRRVLATEVSKNGIRALRA 236

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDA 307
           N+A N + N+ + R+S++E  +A+R  R F RL+   ID+ +Y F T+FVDPPR+G+D A
Sbjct: 237 NLAENGIENIAVARLSAEELGEALRGVRPFRRLQQDGIDLATYDFDTVFVDPPRAGIDAA 296

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           T+ ++  YP ILYISCNP++L  +L  LS TH I   ALFDQFP+T H+E GV+LVRK
Sbjct: 297 TLALIARYPRILYISCNPETLADNLHTLSQTHRIRACALFDQFPFTPHIESGVVLVRK 354


>gi|298488848|ref|ZP_07006874.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156648|gb|EFH97742.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 361

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 164/366 (44%), Positives = 224/366 (61%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   +YR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREYYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ YHR LD  W+  A +      A +  + LIGR+   K+ + +DYV E+L VAG T  
Sbjct: 121 TMCYHRPLDAEWQAAAEQ-----LAAELNVSLIGRSKGQKLIIGQDYVTEKLDVAGHTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|332974198|gb|EGK11131.1| tRNA (uracil-5-)-methyltransferase [Kingella kingae ATCC 23330]
          Length = 359

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 166/363 (45%), Positives = 237/363 (65%), Gaps = 11/363 (3%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y  QL EK +RL   +  F   +L I  S    YRMRAEF IWH+G+++ + MF   +K
Sbjct: 2   PYLTQLQEKTERLHAQLAPFGASSLHIVPSAEQGYRMRAEFRIWHEGEEISYAMFQAGSK 61

Query: 69  ----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
                 +++  F      INALM  ++  I    +L+ +L+Q ++L + S + ++TLIYH
Sbjct: 62  ASSASLIKLQQFPAAYSSINALMPVLLQRIAGCSVLKTRLYQCEFLATLSGEMLITLIYH 121

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD W++ A  L+  L      + +IGR+   KI L +D+V ERL V G T  YRQ+E
Sbjct: 122 KKLDDEWQQAACTLQQEL-----GVWIIGRSRGQKIVLQQDFVTERLNVHGETFQYRQLE 176

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             FTQPNA +   MLEW     +G  GDLLELYCGNGNF+L L+RHF+RVLA E++K SV
Sbjct: 177 GGFTQPNAQVCEKMLEWACEQAQGAGGDLLELYCGNGNFTLPLSRHFNRVLATEVSKTSV 236

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRS 302
            AA++NIAAN  +N++I R+S++EF+ A    REF RLK   I++  Y F TIF+DPPR+
Sbjct: 237 AAAQWNIAANRADNIRIARLSAEEFSAAFAGGREFTRLKQNGIELADYDFSTIFIDPPRA 296

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+DD  + +V  +  I+Y+SCNPD+LC +L+ L+ THT++  ALFDQFP+T H+E GV+L
Sbjct: 297 GVDDEMLKLVAQFDRIIYVSCNPDTLCANLATLTQTHTLQSAALFDQFPFTHHIESGVIL 356

Query: 363 VRK 365
           ++K
Sbjct: 357 LKK 359


>gi|255319354|ref|ZP_05360571.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens
           SK82]
 gi|262379796|ref|ZP_06072952.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens
           SH164]
 gi|255303747|gb|EET82947.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens
           SK82]
 gi|262299253|gb|EEY87166.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter radioresistens
           SH164]
          Length = 361

 Score =  378 bits (970), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/365 (45%), Positives = 238/365 (65%), Gaps = 11/365 (3%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +   Y+ QL  K+ R+      F  P L++F S   H+RMRAEF IWH   D+++ MF++
Sbjct: 1   MTATYQAQLEAKIQRISTQFAEFNPPALEVFGSPEQHFRMRAEFRIWHTDQDMFYAMFER 60

Query: 66  ----QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
               Q K  +R+D F      IN LM  ++A ++ +PLL  +LF++D+L + S + +VTL
Sbjct: 61  NPEDQQKTVIRVDEFPIADHSINQLMPILLAELKADPLLEKRLFEVDFLATLSGEMLVTL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD+ W + A  L + L+     I++IGR+   K+ L  D+V E L V  +   Y+
Sbjct: 121 IYHRKLDNEWEKAARTLAEKLN-----IKIIGRSRGQKLVLTDDFVVEELQVLEQKFKYK 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           QIE  FTQPNA +   MLEW   A +  Q  LLELYCGNGNF+L L+  F+RVLA E+AK
Sbjct: 176 QIEGGFTQPNAIVCQKMLEWACKAAEASQKHLLELYCGNGNFTLPLSLKFERVLATELAK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            SV AA++NI  N ++N+++ R+S++EFTQA   EREF RL+  +IDI SY F T+FVDP
Sbjct: 236 SSVYAAQWNIEQNGIDNIQVARLSAEEFTQAFNGEREFRRLQEAEIDIQSYEFDTVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T+ ++Q +  I+YISCNPD+L  +L IL  +H I + A+FDQFPYT H+E G
Sbjct: 296 PRAGIDLDTLKLLQRFDRIIYISCNPDTLHDNLKILLESHKILKFAMFDQFPYTHHVETG 355

Query: 360 VLLVR 364
           +LL +
Sbjct: 356 ILLEK 360


>gi|66047514|ref|YP_237355.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500625|sp|Q4ZNF5|TRMA_PSEU2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|63258221|gb|AAY39317.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 361

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/366 (45%), Positives = 222/366 (60%), Gaps = 6/366 (1%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL YHR LD        +   A  A +  + LIGR+   K+ +  DYV E+L VAGRT  
Sbjct: 121 TLCYHRPLD-----AEWQAAAAQLAAELDVSLIGRSKGQKLVIGHDYVTEKLDVAGRTFS 175

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI
Sbjct: 176 YRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++FVDP
Sbjct: 236 SKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HME G
Sbjct: 296 PRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHMESG 355

Query: 360 VLLVRK 365
           VLLVR+
Sbjct: 356 VLLVRR 361


>gi|229592733|ref|YP_002874852.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens SBW25]
 gi|262827930|sp|C3K2F6|TRMA_PSEFS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|229364599|emb|CAY52496.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens SBW25]
          Length = 359

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/363 (43%), Positives = 223/363 (61%), Gaps = 6/363 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T    +Y  QL +KV RLR ++  F  P  Q+F S   ++R+RAEF +W +G + ++ MF
Sbjct: 2   TFDAARYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMF 61

Query: 64  DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            Q  K   + I+ F   S  IN LM ++ A  +    L  KLFQ+++LT+ +  A++TL 
Sbjct: 62  SQDDKRTPILIEEFPIASQRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLC 121

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W   A +L   L+     + +IGR+   +  +  DYV E+L V GRT  YRQ
Sbjct: 122 YHRPLDEHWHTAANKLATDLN-----VSIIGRSKGKRDVIGHDYVVEKLEVGGRTFSYRQ 176

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            E +FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K 
Sbjct: 177 PEGAFTQPNGTVNQKMLNWAYDALGDRPDDLLELYCGNGNFTLPLATRVRKVLATEISKT 236

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV AA  N+  N V NV +VR+S++E T+A+   R F RL  ID+  Y F ++FVDPPR+
Sbjct: 237 SVNAALSNLDENAVGNVTLVRLSAEELTEALNEVRPFRRLHGIDLKRYEFSSVFVDPPRA 296

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T  + + + +ILYISCNP++L  +++ L  TH I + A+FDQFP+T HME GVLL
Sbjct: 297 GMDPDTCELTRRFDNILYISCNPETLAANIAQLHDTHRITKCAMFDQFPWTHHMESGVLL 356

Query: 363 VRK 365
            R+
Sbjct: 357 TRR 359


>gi|56475741|ref|YP_157330.1| tRNA (uracil-5-)-methyltransferase [Aromatoleum aromaticum EbN1]
 gi|81599034|sp|Q5P8D0|TRMA_AZOSE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|56311784|emb|CAI06429.1| tRNA (Uracil-5-)-methyltransferase [Aromatoleum aromaticum EbN1]
          Length = 368

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/363 (49%), Positives = 242/363 (66%), Gaps = 6/363 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            +   +Y  QLA+KV + +     F VP   +F S P+HYR+RAEF +WHDG+ + + MF
Sbjct: 5   AIDPAEYASQLADKVTQFKHAFTPFAVPEPTVFPSAPLHYRLRAEFRMWHDGERIDYAMF 64

Query: 64  D-QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           D  + K+ + I+ F   +  I A M  +   +R    L+ +LFQ+++L + S + +++LI
Sbjct: 65  DPAEPKQPIAIEQFDIAAEPICAAMPRLRERLRASETLKRRLFQVEFLATLSGELMISLI 124

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD++W   A        A +  +QLIGR+ K KI LDRD+V ER  + GR L Y+Q
Sbjct: 125 YHRPLDESWEAAARE-----LAAELNVQLIGRSRKQKIVLDRDWVLERFALDGRPLQYKQ 179

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IE SFTQPN G+N  ML W     +G+ GDLLELYCGNGNF++ LA  FDRVLA E++K 
Sbjct: 180 IEGSFTQPNGGVNRQMLGWACEQVRGVGGDLLELYCGNGNFTVALAPLFDRVLATEVSKT 239

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SVEAA YN+AAN + NV +VRMSS E + A+ R REF R+KD+D+  YRF T+FVDPPRS
Sbjct: 240 SVEAAHYNLAANDIGNVAMVRMSSDEISAALARTREFRRMKDVDLDRYRFSTLFVDPPRS 299

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD  TV + + +  ILYISCNP +L  +++ L  TH I   A+FDQFPYTRH+ECG+LL
Sbjct: 300 GLDAPTVELARGFDRILYISCNPQTLQENVAALQATHGIAGAAVFDQFPYTRHLECGLLL 359

Query: 363 VRK 365
            R+
Sbjct: 360 TRR 362


>gi|312963175|ref|ZP_07777660.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6]
 gi|311282686|gb|EFQ61282.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens WH6]
          Length = 359

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 160/363 (44%), Positives = 223/363 (61%), Gaps = 6/363 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T    +Y  QL +KV RLR ++  F  P  Q+F S   H+R+RAEF +W +  + ++ MF
Sbjct: 2   TFDAARYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQHFRLRAEFRLWREAGERHYAMF 61

Query: 64  DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            Q  K   + I+ F   S  IN LM ++ A  +    L  KLFQ+++LT+ +  A++TL 
Sbjct: 62  SQDDKRTPILIEEFPIASQRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLC 121

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W   A +L   L+     + +IGR+   +  +  DYV E+L V GRT  YRQ
Sbjct: 122 YHRPLDEHWHTAANKLAADLN-----VSIIGRSKGKRDVIGHDYVVEKLEVGGRTFSYRQ 176

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            E +FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA     VLA EI+K 
Sbjct: 177 PEGAFTQPNGTVNQKMLNWAYEALGDRPDDLLELYCGNGNFTLPLATRVRNVLATEISKT 236

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  ID+ SY F ++FVDPPR+
Sbjct: 237 SVNAALSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRA 296

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T  + + + +ILYISCNP++L  +++ L  TH I + A+FDQFP+T HME GVLL
Sbjct: 297 GMDPDTCELTRRFDNILYISCNPETLAANIAQLHDTHRITQCAMFDQFPWTHHMESGVLL 356

Query: 363 VRK 365
            R+
Sbjct: 357 TRR 359


>gi|56461373|ref|YP_156654.1| tRNA (uracil-5-)-methyltransferase [Idiomarina loihiensis L2TR]
 gi|56180383|gb|AAV83105.1| tRNA (uracil-5-)-methyltransferase [Idiomarina loihiensis L2TR]
          Length = 342

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 170/342 (49%), Positives = 243/342 (71%), Gaps = 1/342 (0%)

Query: 24  MMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLI 83
           M   F +  +++F S   HYRMRAEF +WH+GDDLY+IMF+ +T+E++R++ F+PGSLLI
Sbjct: 1   MFRPFHLNEVEVFESPASHYRMRAEFRVWHEGDDLYYIMFNPETREKIRMNEFIPGSLLI 60

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
           N LM E+++ ++   +LR KLFQ+D+LT+ + +AI++L+YHR LDD W + AI+LR+AL 
Sbjct: 61  NELMKELISLLKPNDVLRRKLFQVDFLTTTTGEAIISLLYHRPLDDQWEQEAIQLREALT 120

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
           +   ++++IGRA K K  L ++ V E + V G++ +  Q ENSFTQPNA IN  M+ W  
Sbjct: 121 SI-AKVEVIGRARKQKRVLYKESVTEEVKVDGKSYLSLQTENSFTQPNAIINQQMISWAK 179

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                   DLLELYCGNGNF+L LA +F+RVLA EI+K SV AAR N   N++ NV +VR
Sbjct: 180 RHAGNNSHDLLELYCGNGNFTLPLAENFNRVLATEISKSSVAAARENAELNNIKNVTVVR 239

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
           MS++EF+ A+  E E  R  D +IHS+  +T+ VDPPR+GLD  T+ +V  Y  I+YISC
Sbjct: 240 MSAEEFSAALSGELESKRAADAEIHSFDCQTVLVDPPRAGLDKDTLKLVSQYQRIIYISC 299

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP++L  ++  LS++H +   A+FDQFPYT H+E GV+L RK
Sbjct: 300 NPETLTENIHDLSSSHKVTAAAMFDQFPYTDHIETGVVLERK 341


>gi|254448334|ref|ZP_05061795.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015]
 gi|198261947|gb|EDY86231.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium HTCC5015]
          Length = 364

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 177/369 (47%), Positives = 241/369 (65%), Gaps = 13/369 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++ Y QQL  K  RL Q++  FQ P L+++ S P++ R+RAEF IWH+G+D  + MF+  
Sbjct: 1   MNDYAQQLERKRQRLSQLLAPFQAPALEVYESAPLNCRLRAEFRIWHEGEDCCYAMFEPG 60

Query: 67  ----TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
               +K  +RI+     S  IN LM  ++  ++ + L R +L+QI++L++ S   +VTLI
Sbjct: 61  QKASSKSLIRIEQLPIASRAINELMPPLLDALKSKELTRKRLYQIEFLSTLSGDMLVTLI 120

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ LDD WR  A +L++ L      I +IGR+ K K  L RDYV E+ TVA R   Y+Q
Sbjct: 121 YHKKLDDDWRTAAAQLQEQL-----GIAIIGRSRKQKCVLSRDYVLEQFTVAQRHYEYQQ 175

Query: 183 IENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +E  FTQPN  +   ML W    A T   +GDLLELYCGNGNF+L L+RHF RVLA E+A
Sbjct: 176 LEGGFTQPNGAMCEIMLNWASDCAKTMQARGDLLELYCGNGNFTLPLSRHFRRVLATEVA 235

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVD 298
           K SV AA +NI  N  +N+ ++R+SS+E TQA+  EREF RL  K I++  Y F  +FVD
Sbjct: 236 KTSVYAAEWNIQRNACDNITVIRLSSEELTQALNGEREFRRLQQKAIELDQYDFDAVFVD 295

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           PPRSG+D  T  +   + HILYISCNP++L RDL++L  TH IER ALFDQFP T H+E 
Sbjct: 296 PPRSGMDVNTCQLTARFEHILYISCNPETLARDLALLCETHRIERAALFDQFPQTDHIEA 355

Query: 359 GVLLVRKPS 367
           GV L R+ +
Sbjct: 356 GVWLKRQGA 364


>gi|70732678|ref|YP_262441.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf-5]
 gi|123652774|sp|Q4K5P2|TRMA_PSEF5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|68346977|gb|AAY94583.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens Pf-5]
          Length = 359

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 161/363 (44%), Positives = 227/363 (62%), Gaps = 6/363 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T     Y  QL +KV RLR ++  F  P  Q+F S   ++R+RAEF +W +  + ++ MF
Sbjct: 2   TFDAASYTTQLNDKVARLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREAGERHYAMF 61

Query: 64  DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            Q  K   + I+ F   S  IN LM  + A  +    L  KLFQ+++LT+ +  A++TL 
Sbjct: 62  SQDDKRTPILIEEFPIASQRINQLMPRLKAAWQASAPLSHKLFQVEFLTTLAGDAMITLC 121

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W + A +L   L     ++ +IGR+   +  + +DYV E+L V GRT  YRQ
Sbjct: 122 YHRPLDEHWHKAASQLAADL-----KVSVIGRSKGKREVIGQDYVVEKLEVGGRTFSYRQ 176

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA EI+K 
Sbjct: 177 PEGAFTQPNGTVNQKMLNWAYEALGERQDDLLELYCGNGNFTLPLATRVRKVLATEISKT 236

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV AA  N++ N V+NV +VR+S++E T+A+   R F RL+ +D+ SY F ++FVDPPR+
Sbjct: 237 SVNAALSNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLQGVDLKSYEFGSVFVDPPRA 296

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T  + + + +ILYISCNP++L  +++ L  TH I R ALFDQFP+T HME GVLL
Sbjct: 297 GMDPDTCELTRRFDNILYISCNPETLAANIAQLHDTHRITRCALFDQFPWTHHMESGVLL 356

Query: 363 VRK 365
            R+
Sbjct: 357 TRR 359


>gi|330811870|ref|YP_004356332.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379978|gb|AEA71328.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 359

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 162/363 (44%), Positives = 223/363 (61%), Gaps = 6/363 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T     Y  QL  KV RLR ++  F  P   +F S   ++R+RAEF +W +  + ++ MF
Sbjct: 2   TFDSQAYTAQLQGKVTRLRDLLAPFDAPEPAVFDSPLKNFRLRAEFRLWREAGERHYAMF 61

Query: 64  DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            Q  K   + I+ F   SL IN LM ++ A  +    L  KLFQ+++LT+ +  A++TL 
Sbjct: 62  SQDDKRTPILIEEFPIASLRINQLMPQLKAAWQASAPLSHKLFQVEFLTTLAGDAMITLC 121

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W   A +L   L      + +IGR+   +  +  DYV E+L V GRT  YRQ
Sbjct: 122 YHRPLDEHWHAAASKLATDL-----GVSIIGRSKGKREVIGHDYVVEKLEVGGRTFSYRQ 176

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            E +FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K 
Sbjct: 177 PEGAFTQPNGTVNQKMLNWAYDALGDRSDDLLELYCGNGNFTLPLATRVRKVLATEISKT 236

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV AA  N++ N V+NV +VR+S++E T+A+   R F RL  ID+ SY F ++FVDPPR+
Sbjct: 237 SVNAALSNLSENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRA 296

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D  T  + + + +ILYISCNPD+L  +++ L+ TH I R ALFDQFP+T HME GVLL
Sbjct: 297 GMDPDTCELTRRFDNILYISCNPDTLAANIAQLNDTHRITRCALFDQFPWTHHMESGVLL 356

Query: 363 VRK 365
            R+
Sbjct: 357 TRR 359


>gi|254283016|ref|ZP_04957984.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR51-B]
 gi|219679219|gb|EED35568.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR51-B]
          Length = 366

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 166/361 (45%), Positives = 230/361 (63%), Gaps = 8/361 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            D+Y+  L  KV  L    LA       +F S    +RMRAEF +WHD DDLY++MF   
Sbjct: 8   PDRYQTLLDAKVKSLVPRFLALGASEPDVFTSPTTGFRMRAEFRVWHDDDDLYYVMFKPG 67

Query: 67  -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
             K  +RID+F      I  +M  ++  +R +PLLR KLFQ+++L + + + +VTL+YHR
Sbjct: 68  DGKAPVRIDHFPIACDTIQQIMPRLLTAVRNKPLLRRKLFQVEFLATTTGELLVTLVYHR 127

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD  W+E A  LR+ L+     + LIGR+ K KI L RD+V+ERLTV  R   +RQ E 
Sbjct: 128 PLDGQWQEAAEHLRNELN-----VSLIGRSRKQKIILGRDWVEERLTVDDRVYRFRQPEQ 182

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           +FTQPNA +N  M+ W       I GDLLELYCG GNF+L LA  FDRV+A E++KP+  
Sbjct: 183 AFTQPNARVNTAMITWAKTQCHDIDGDLLELYCGIGNFTLPLASEFDRVIATEMSKPATA 242

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSG 303
           AA YN   N ++NV+  R+S+++ T A+R ER F RL  +   +  YR  T+ VDPPR+G
Sbjct: 243 AANYNREVNGIDNVEFARLSAEDMTAALRGERLFRRLAHLHKPLSDYRLSTLLVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT  +   +  +LY+SCNP++L ++L +L+ TH I++ A+FDQFPYT H+EC VLL 
Sbjct: 303 LDPATEALATGFDTVLYVSCNPETLLKNLDVLTATHAIKQFAVFDQFPYTHHLECAVLLK 362

Query: 364 R 364
           R
Sbjct: 363 R 363


>gi|294788983|ref|ZP_06754223.1| tRNA (uracil-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
 gi|294483085|gb|EFG30772.1| tRNA (uracil-5-)-methyltransferase [Simonsiella muelleri ATCC
           29453]
          Length = 363

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 173/368 (47%), Positives = 243/368 (66%), Gaps = 14/368 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +  Y +QL +K + L + +  F  P LQ+F S   HYR RAEF IWH+GD + + MF   
Sbjct: 1   MTTYNEQLQQKTNYLTEKLRPFHAPKLQVFPSAEQHYRQRAEFRIWHEGDAMSYAMFQAG 60

Query: 67  TK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS--DQAIVT 120
            K      +++D F   +  IN LM ++M  I   P+LR + +Q+++L + S   + +VT
Sbjct: 61  QKASSASLIKLDNFPTAAHSINDLMPKLMHAISDCPVLRERWYQVEFLATLSVDSKILVT 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           LIYH+ LDDAW   A +L++ L+     I +IGR+   KI L +D+V E+LTV GR   Y
Sbjct: 121 LIYHKRLDDAWEAAARQLQNDLN-----IWIIGRSRGQKIVLTQDFVTEKLTVHGREFQY 175

Query: 181 RQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           RQ+E  FTQPNA I   ML W   AA    Q DLLELYCGNGNF+L L++HF RVLA EI
Sbjct: 176 RQLEGGFTQPNAQICEKMLAWACNAAGNSKQFDLLELYCGNGNFTLPLSQHFRRVLATEI 235

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFV 297
           +K SV AA++NI+AN +NN++I R+S++E T+A    R F RL  + ID+  Y F TIF+
Sbjct: 236 SKTSVAAAQWNISANQINNIQIARLSAEELTEAFSGSRAFQRLTTQGIDLQHYDFSTIFI 295

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPR+G+DD T+ +V  + HI+Y+SCNP++LC +L  L+  H I+ +ALFDQFP+T H+E
Sbjct: 296 DPPRAGVDDETLKLVAKFEHIIYVSCNPETLCENLQYLTQMHKIQEVALFDQFPFTHHIE 355

Query: 358 CGVLLVRK 365
            GVLL++K
Sbjct: 356 TGVLLIKK 363


>gi|254480467|ref|ZP_05093714.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2148]
 gi|214039050|gb|EEB79710.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2148]
          Length = 371

 Score =  375 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 169/363 (46%), Positives = 244/363 (67%), Gaps = 3/363 (0%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           + +QYE+ LA KV+R+ +++  + VP   IFRS    +RMRAEF +WH GD L ++MF +
Sbjct: 7   IPEQYEELLAAKVERVSRLLDPYAVPEPSIFRSALTGFRMRAEFRMWHQGDALDYVMFRR 66

Query: 66  QT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
              K  + I  F      I  LM  ++  I+    LR KLFQ+++L++ + ++++TL+YH
Sbjct: 67  DDPKTPVPIKTFPIACDSIQQLMPALLDIIKGNQELRRKLFQVEFLSTLAGESLITLVYH 126

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R L+ +W   A +L D L     ++ LIGR+ K KI L +++V E L + G++  Y+Q E
Sbjct: 127 RKLEPSWEAEAQKLHDDLSTLCPELSLIGRSRKQKIILGQEWVCETLDIEGQSFRYQQYE 186

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +FTQPNA +N+ M+ W       + GDLLELYCGNGNF+L LA+ FD V+A E+AK SV
Sbjct: 187 QAFTQPNARVNIKMISWACEQALNLSGDLLELYCGNGNFTLPLAQRFDNVIATELAKVSV 246

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRS 302
            AAR N+  N V N +I+R++++E TQAM + REF RL+D+   +H Y  +T+FVDPPR+
Sbjct: 247 RAARNNLGMNAVRNTQIIRLAAEEVTQAMNQVREFRRLQDLSKPLHEYDLRTVFVDPPRA 306

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD+ TV MV  +  I+YISCNP++L  +L++L  THT+E  ALFDQFPYT HMECGVLL
Sbjct: 307 GLDEQTVEMVSHFETIIYISCNPETLASNLAVLCNTHTVEMFALFDQFPYTDHMECGVLL 366

Query: 363 VRK 365
            +K
Sbjct: 367 KQK 369


>gi|153840002|ref|ZP_01992669.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ3810]
 gi|149746450|gb|EDM57461.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ3810]
          Length = 318

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 181/317 (57%), Positives = 238/317 (75%), Gaps = 2/317 (0%)

Query: 51  IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
           +WH+G+DLY+IMF+Q+T+E+ R+D F   S LIN LM  ++  ++    LR KLFQ+D+L
Sbjct: 1   VWHEGEDLYYIMFNQETREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFL 60

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
           ++ S + +V+L+YHR LD+ W E A  L+  L+   + + +IGRA K KI LDRDYV E+
Sbjct: 61  STLSGEILVSLLYHRQLDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIILDRDYVIEK 120

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           L V G++ IY+Q+ENSFTQPN  +   MLEW +  T+   GDLLELYCGNGNFSL LA++
Sbjct: 121 LDVNGQSYIYQQVENSFTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQN 180

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIH 288
           FDRVLA E+AKPSVE+A+YNIAAN ++NV+I+RMS++EFT+AM  +REF RLKD  +D+ 
Sbjct: 181 FDRVLATELAKPSVESAQYNIAANKIDNVQIIRMSAEEFTEAMEGKREFRRLKDNGVDLK 240

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348
           SY   TIFVDPPR+G+D  T  MVQ Y  I+YISCNP++L  +L ILS TH + R ALFD
Sbjct: 241 SYNCNTIFVDPPRAGMDVDTCKMVQGYERIMYISCNPETLKENLDILSETHNVTRFALFD 300

Query: 349 QFPYTRHMECGVLLVRK 365
           QFPYT HME GVLL RK
Sbjct: 301 QFPYTHHMEAGVLLERK 317


>gi|254785733|ref|YP_003073162.1| tRNA (uracil-5-)-methyltransferase [Teredinibacter turnerae T7901]
 gi|259547835|sp|C5BTY4|TRMA_TERTT RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|237686461|gb|ACR13725.1| tRNA-methyltransferase [Teredinibacter turnerae T7901]
          Length = 364

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/366 (48%), Positives = 238/366 (65%), Gaps = 8/366 (2%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD---GDDLY 59
           G+   + Y+ Q +EK++R R     F    +  FRS    YRMRAEF IWHD   G   Y
Sbjct: 4   GSAPTETYDVQFSEKIERTRDQFKDFFNGEIDAFRSPASEYRMRAEFKIWHDKDTGRACY 63

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            +   +   + + I+ F  GS  I  LM +++A +    LL+ KLFQI++LT+ S  A+V
Sbjct: 64  AMHQPKVKNQVIPIEDFEIGSARIRELMPDVLAAVNNSTLLKQKLFQIEFLTATSGDAVV 123

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +LIYHR L + W+  A +L+  L       QLIGR+ K KI L RDYV E L V  ++  
Sbjct: 124 SLIYHRPLSEQWQAEAEQLQSTLRC-----QLIGRSRKQKIALGRDYVLETLLVNDKSYT 178

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q+E  FTQPNA +   ML W    +  I GDLLELYCGNGNF+L LA++F RVLA E+
Sbjct: 179 YQQVETGFTQPNAAVCQKMLTWAQTVSADIGGDLLELYCGNGNFTLPLAQNFSRVLATEV 238

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV++A YNI  N   N+ I R+SS+EFT+AM + R F RL++ID+ SY+F TIFVDP
Sbjct: 239 SKTSVKSALYNIEQNGATNIAIARLSSEEFTEAMNKVRRFRRLENIDLDSYQFSTIFVDP 298

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD  TV +   + +I+YISCNPD+L  +L+ L+TTH + RLALFDQFPYT H ECG
Sbjct: 299 PRAGLDTDTVKLASRFDNIIYISCNPDTLADNLASLATTHEVTRLALFDQFPYTEHRECG 358

Query: 360 VLLVRK 365
           V+L R+
Sbjct: 359 VILRRR 364


>gi|319956633|ref|YP_004167896.1| tRNA (uracil-5-)-methyltransferase [Nitratifractor salsuginis DSM
           16511]
 gi|319419037|gb|ADV46147.1| tRNA (uracil-5-)-methyltransferase [Nitratifractor salsuginis DSM
           16511]
          Length = 374

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 152/365 (41%), Positives = 221/365 (60%), Gaps = 6/365 (1%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S TL    YE+QL  K +RLR ++  F    ++ F S   HYR RAEF IWH+G    + 
Sbjct: 11  SCTLYKLDYEKQLERKAERLRGLLAPFYDGEIERFASPDSHYRARAEFRIWHEGGRADYA 70

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M +      + I+        +   M  ++  +   P+L  KLF +++L + + + ++T+
Sbjct: 71  MGNLSKDGNVIIEECPKVIRPVEERMEPLLEAVNASPVLSRKLFGVEFLAATTGECLITM 130

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YHR LD++W   A  L + L+A      +IGRA K K+ L R++V E L +  +   YR
Sbjct: 131 LYHRPLDESWAREARALEEQLNA-----SIIGRARKQKVVLSREFVTEELEIDSKKYKYR 185

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIA 240
             E  FTQPN  +N  M+ W         G DLLE YCG GNF++ LA +F +VLA EI+
Sbjct: 186 HYEGGFTQPNPYVNTRMIAWARERAAEAGGGDLLEAYCGLGNFTIPLAENFSKVLATEIS 245

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           K S++AA+ N A N V N++ VR+SS+E T A+R+ER+FNRLK I+I  Y FK + VDPP
Sbjct: 246 KNSIKAAKENCALNGVENIEFVRLSSEEMTSALRKERQFNRLKGINIDEYDFKCVLVDPP 305

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD+AT  ++  + +I+YISCNP++L RDL  LS +H +   A FDQFP+T H+E GV
Sbjct: 306 RAGLDEATRELITTFENIIYISCNPETLARDLERLSQSHEVHAAASFDQFPHTEHLESGV 365

Query: 361 LLVRK 365
            L R+
Sbjct: 366 FLQRR 370


>gi|213612916|ref|ZP_03370742.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 451

 Score =  372 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 198/306 (64%), Positives = 239/306 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 8   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 67

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 68  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 127

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 128 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 187

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 188 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 247

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGL
Sbjct: 248 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGL 307

Query: 305 DDATVG 310
           D  T  
Sbjct: 308 DSETRK 313


>gi|117617414|gb|ABK51296.1| BryS [Candidatus Endobugula sertula]
          Length = 365

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 171/366 (46%), Positives = 248/366 (67%), Gaps = 9/366 (2%)

Query: 4   TLLIDQYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           +   DQY+QQL  KV    D+L Q+     V ++ ++ S   +YRMRAEF +WH G+  +
Sbjct: 5   STYPDQYQQQLDNKVNIFKDQLTQLNHNMNVDHIAVYNSPHCYYRMRAEFKVWHTGNTSH 64

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           + M+D+  KE + ++ F   +  IN LM  +MA I    +LR KLFQI++LT+Q++  +V
Sbjct: 65  YAMYDKNKKEPVFLEKFPVAAQSINQLMPLVMAEITQHEMLRKKLFQIEFLTTQTNDTLV 124

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +LIYH+ L++ W      ++D L      I +IGR+ K K+ LDRD+V+E LTV G+   
Sbjct: 125 SLIYHKSLNEQWVHTISPIKDKL-----GINIIGRSRKQKMILDRDFVNEELTVNGKIFY 179

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q E SFTQPNA +   ML W +  +K   GDLLELYCGNGNF+L L+++F+RV+A E+
Sbjct: 180 YQQNEGSFTQPNAKVCEKMLAWAVNNSKNNHGDLLELYCGNGNFTLPLSQNFNRVIATEV 239

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV +A+ NI  N+++NV I+RMSS++F+ A+ + R F RLK+ D+ SY F T+FVDP
Sbjct: 240 SKSSVHSAQKNIQKNNIDNVSILRMSSEDFSLAIDKIRPFRRLKEYDLESYHFSTVFVDP 299

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLDD T+ M++ + +I+YISCNP +L  +L  L  TH IE LA FDQFPYT H+E G
Sbjct: 300 PRAGLDDGTIEMIKRFENIIYISCNPKTLINNLDSLCRTHNIEALAAFDQFPYTEHLEAG 359

Query: 360 VLLVRK 365
           V+L +K
Sbjct: 360 VILKKK 365


>gi|92113465|ref|YP_573393.1| tRNA (uracil-5-)-methyltransferase [Chromohalobacter salexigens DSM
           3043]
 gi|91796555|gb|ABE58694.1| tRNA (uracil-5-)-methyltransferase [Chromohalobacter salexigens DSM
           3043]
          Length = 391

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/365 (46%), Positives = 233/365 (63%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF--- 63
            ++YE QL  K +R+      F  P L++F S P HYR R EF +WH+GDDL++ MF   
Sbjct: 26  PERYEAQLDAKRERVTAQFARFSPPALEVFPSPPSHYRQRCEFRLWHEGDDLFYAMFEVD 85

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + KE +R+D +   S  INALM  +   +    +LR KLFQ+++LT+ S +A+VTL
Sbjct: 86  PSDPKRKEVIRLDDYPVASERINALMPALREALLASDVLRRKLFQVEFLTTLSGEALVTL 145

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD AW + A  L+  L      + +IGRA K ++ LDRD+V ERL V GR  +Y+
Sbjct: 146 IYHRQLDAAWEQEARALQTTL-----GVSIIGRARKQRLVLDRDHVWERLQVEGREFVYQ 200

Query: 182 QIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           Q+ENSFTQPNA I   ML W      +  +GDL+E YCGNGNF++ LA +F RV+A EI+
Sbjct: 201 QVENSFTQPNAAICQSMLGWARDVTRESREGDLVEFYCGNGNFTVALAENFRRVVATEIS 260

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + SV +A  N+ AN V N  + RMS++EF+ A+  E+   R+  + +  + F T  VDPP
Sbjct: 261 RTSVASANVNLEANAVANAVVARMSAEEFSAALAGEKTGRRVAALALDEHTFTTALVDPP 320

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD  +   ++ Y  I+YISCNPD+L  +L  LS TH + R ALFDQFPYT H ECGV
Sbjct: 321 RAGLDAHSCEQLKVYERIVYISCNPDTLEANLEQLSATHVVTRFALFDQFPYTDHCECGV 380

Query: 361 LLVRK 365
           LL R+
Sbjct: 381 LLERR 385


>gi|254457842|ref|ZP_05071269.1| tRNA (uracil-5-)-methyltransferase [Campylobacterales bacterium GD
           1]
 gi|207085235|gb|EDZ62520.1| tRNA (uracil-5-)-methyltransferase [Campylobacterales bacterium GD
           1]
          Length = 368

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 155/363 (42%), Positives = 232/363 (63%), Gaps = 6/363 (1%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +  + YE QL++K++  R     F   N+ +F+S   HYR R+EF IWH  D++++ M
Sbjct: 12  CRVYENGYEGQLSDKLELNRDRFTPFYTKNISVFKSPDSHYRSRSEFKIWHIEDEIHYGM 71

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
              + K  + +D     +  I+ LM +++ +I+ + +   KLF  D+L+S   + +V+LI
Sbjct: 72  NHLEHKGVVLVDDCPQVNAFIHTLMPKLLVSIKDKGIC-FKLFGADFLSSSRGEMVVSLI 130

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD  W++ A  +   L      I +IGR+ K K+ + +DY+ E L +  +   ++ 
Sbjct: 131 YHRKLDQEWQDKATEIAKEL-----GIYIIGRSRKQKLVIGQDYITESLNIDEKIYRFKY 185

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPN+ +N  M+ W L +     GDLLELYCG GNF++  A+ F++VLA EI+KP
Sbjct: 186 IENSFTQPNSKVNEQMISWALKSLSDCGGDLLELYCGAGNFTIPFAKKFNKVLATEISKP 245

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           S+ AA+ N+  N V N++ VRMS +EF QA+  E+EF R+ +IDI +Y   TIFVDPPRS
Sbjct: 246 SINAAKENMLLNDVENIEFVRMSVEEFVQALDGEKEFRRMNEIDIDAYNINTIFVDPPRS 305

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+DDA+      + +ILYISCNP++L RDL ILS TH +  +ALFDQFPYT H+E GV L
Sbjct: 306 GMDDASCRFASRHDNILYISCNPETLVRDLKILSETHDVVDMALFDQFPYTHHVEMGVKL 365

Query: 363 VRK 365
           +++
Sbjct: 366 IKR 368


>gi|134035057|sp|Q1QXW4|TRMA_CHRSD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
          Length = 373

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/365 (46%), Positives = 233/365 (63%), Gaps = 11/365 (3%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF--- 63
            ++YE QL  K +R+      F  P L++F S P HYR R EF +WH+GDDL++ MF   
Sbjct: 8   PERYEAQLDAKRERVTAQFARFSPPALEVFPSPPSHYRQRCEFRLWHEGDDLFYAMFEVD 67

Query: 64  --DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             D + KE +R+D +   S  INALM  +   +    +LR KLFQ+++LT+ S +A+VTL
Sbjct: 68  PSDPKRKEVIRLDDYPVASERINALMPALREALLASDVLRRKLFQVEFLTTLSGEALVTL 127

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR LD AW + A  L+  L      + +IGRA K ++ LDRD+V ERL V GR  +Y+
Sbjct: 128 IYHRQLDAAWEQEARALQTTL-----GVSIIGRARKQRLVLDRDHVWERLQVEGREFVYQ 182

Query: 182 QIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           Q+ENSFTQPNA I   ML W      +  +GDL+E YCGNGNF++ LA +F RV+A EI+
Sbjct: 183 QVENSFTQPNAAICQSMLGWARDVTRESREGDLVEFYCGNGNFTVALAENFRRVVATEIS 242

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + SV +A  N+ AN V N  + RMS++EF+ A+  E+   R+  + +  + F T  VDPP
Sbjct: 243 RTSVASANVNLEANAVANAVVARMSAEEFSAALAGEKTGRRVAALALDEHTFTTALVDPP 302

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GLD  +   ++ Y  I+YISCNPD+L  +L  LS TH + R ALFDQFPYT H ECGV
Sbjct: 303 RAGLDAHSCEQLKVYERIVYISCNPDTLEANLEQLSATHVVTRFALFDQFPYTDHCECGV 362

Query: 361 LLVRK 365
           LL R+
Sbjct: 363 LLERR 367


>gi|88800040|ref|ZP_01115610.1| tRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297]
 gi|88777166|gb|EAR08371.1| tRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297]
          Length = 362

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 163/360 (45%), Positives = 235/360 (65%), Gaps = 7/360 (1%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            DQY++QLA+K DRL+ ++ A+  P L IF S   HYRMRAEF  WH+G+  Y+ MF  +
Sbjct: 7   PDQYDRQLADKTDRLKVLLDAWDHPELNIFSSTSAHYRMRAEFRFWHEGERSYYAMFRPE 66

Query: 67  TKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            +   + +  F   + L N LM ++   +  +P LR +LFQ+++LT+QS  A++TLIYHR
Sbjct: 67  DRRTPVEVVDFPVATELCNDLMTKVRNAVHEDPELRNRLFQVEFLTTQSGDALITLIYHR 126

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD  W E     R      ++   +IGRA K ++ LDRDYV E L++ GR   + Q EN
Sbjct: 127 QLDSNWEE-----RARYWQEQWGYPVIGRARKLRLVLDRDYVTETLSILGRDFHFHQYEN 181

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SFTQPNAG+   M++W +  ++G +  DLLELYCGNGNFS+ LA++F RVL  EI++ SV
Sbjct: 182 SFTQPNAGVCEQMIQWAVEHSQGRESADLLELYCGNGNFSIPLAQNFRRVLGTEISRTSV 241

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           ++A+ NIA N V+NV I RM+S++ ++A        R ++  I  Y F TI VDPPR+GL
Sbjct: 242 KSAQENIALNQVDNVSIARMASEDLSKAWLHNEPNRRFREFRIDDYDFDTILVDPPRAGL 301

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+ TV +++ +  I+YISCNP+S+ +++  L   + +   ALFDQFPYT HME GV+L R
Sbjct: 302 DEDTVELLKKFRRIIYISCNPESMVKNIEALRGQYRMTATALFDQFPYTHHMEAGVILER 361


>gi|313109698|ref|ZP_07795639.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 39016]
 gi|310882141|gb|EFQ40735.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 363

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 168/359 (46%), Positives = 227/359 (63%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W +   +  Y+ MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRYYAMFEQGD 70

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
               + I+ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L   L      + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|121624856|gb|ABM63534.1| BryS [Candidatus Endobugula sertula]
          Length = 365

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/366 (46%), Positives = 247/366 (67%), Gaps = 9/366 (2%)

Query: 4   TLLIDQYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           +   DQY+QQ   KV    D+L+Q+     V ++ ++ S   +YRMRAEF +WH G+  +
Sbjct: 5   STYPDQYQQQPDNKVNIFKDQLKQLNHNMNVDHIAVYSSPNCYYRMRAEFKVWHTGNTSH 64

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           + M+D+  KE + ++ F   +  IN LM  +MA I    +LR KLFQI++LT+Q++  +V
Sbjct: 65  YAMYDKNKKEPVFLEKFPVAAQSINQLMPLVMAEITQHEMLRKKLFQIEFLTTQTNDTLV 124

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +LIYH+ L++ W      ++D L      I +IGR+ K K+ LDRD+V+E LTV G+   
Sbjct: 125 SLIYHKSLNEQWVHTISPIKDKL-----GINIIGRSRKQKMILDRDFVNEELTVNGKIFY 179

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+Q E SFTQPNA +   ML W +  +K   GDLLELYCGNGNF+L L+++F+RV+A E+
Sbjct: 180 YQQNEGSFTQPNAKVCEKMLAWAVNNSKNNHGDLLELYCGNGNFTLPLSQNFNRVIATEV 239

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K SV +A+ NI  N+++NV I+RMSS++F+ A+ + R F RLK  D+ SY F T+FVDP
Sbjct: 240 SKSSVHSAQKNIKKNNIDNVSILRMSSEDFSLAIDKIRPFRRLKKYDLESYHFSTVFVDP 299

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLDD T+ M++ + +I+YISCNP +L  +L  L  TH IE LA FDQFPYT H+E G
Sbjct: 300 PRAGLDDGTIEMIKRFENIIYISCNPKTLINNLDSLCRTHNIEALAAFDQFPYTEHLEAG 359

Query: 360 VLLVRK 365
           V+L +K
Sbjct: 360 VILKKK 365


>gi|254244378|ref|ZP_04937700.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 2192]
 gi|126197756|gb|EAZ61819.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa 2192]
          Length = 363

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 167/359 (46%), Positives = 227/359 (63%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W +   +  ++ MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
               + I+ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIENFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L   L      + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|107103819|ref|ZP_01367737.1| hypothetical protein PaerPA_01004890 [Pseudomonas aeruginosa PACS2]
 gi|218893815|ref|YP_002442684.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa LESB58]
 gi|254238543|ref|ZP_04931866.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa C3719]
 gi|226705983|sp|B7V1D2|TRMA_PSEA8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|126170474|gb|EAZ55985.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa C3719]
 gi|218774043|emb|CAW29859.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa LESB58]
          Length = 363

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 167/359 (46%), Positives = 227/359 (63%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W +   +  ++ MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
               + I+ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L   L      + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|152993415|ref|YP_001359136.1| tRNA (uracil-5-)-methyltransferase [Sulfurovum sp. NBC37-1]
 gi|172048743|sp|A6QBC0|TRMA_SULNB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|151425276|dbj|BAF72779.1| tRNA (uracil-5-)-methyltransferase [Sulfurovum sp. NBC37-1]
          Length = 371

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 151/366 (41%), Positives = 222/366 (60%), Gaps = 7/366 (1%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S  L    Y QQL  K  R+ +++  F    L++F S    YR RAEF IWH+ +   + 
Sbjct: 11  SCALYNQNYTQQLQLKEQRVSELLSPFYTGELELFDSPDSRYRARAEFRIWHESERCDYA 70

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-EPLLRAKLFQIDYLTSQSDQAIVT 120
           M + + K  + I+        I   M +++  I   + +L+ +LF +++L + +D+ +VT
Sbjct: 71  MGNIEKKGAVTIEECPKVIEPIEKRMWKLLEKINASQEVLKQRLFAVEFLATTTDECLVT 130

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           ++YHR LD+AW E A  L   L+ R     ++GR+ K K+ L  ++V E L + G+   Y
Sbjct: 131 MLYHRKLDEAWSEEAKMLERELNCR-----VMGRSRKQKVILSDEFVTETLEIDGKEFTY 185

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEI 239
            Q E+ FTQPN  +NV M+EW +   K +  GD LE YCG GNF+L L+ +FD VLA EI
Sbjct: 186 VQYESGFTQPNPAVNVKMIEWAIWQAKKVGYGDFLESYCGLGNFTLPLSHYFDNVLATEI 245

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K S+ AA  N   N V N+   R++S+E T+A+   REF+RLK ID+ SY F T+ VDP
Sbjct: 246 SKRSIHAALQNCELNAVENITFARLASEEMTEALNGVREFSRLKGIDLKSYDFSTVLVDP 305

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD+ T+ ++    +I+YISCNP++L RDL  L  THT+   ALFDQFP+T H+E G
Sbjct: 306 PRAGLDEGTIELISNIDNIIYISCNPETLARDLETLIKTHTVMEAALFDQFPHTEHVESG 365

Query: 360 VLLVRK 365
           V L +K
Sbjct: 366 VFLQKK 371


>gi|296391546|ref|ZP_06881021.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAb1]
          Length = 363

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 167/359 (46%), Positives = 227/359 (63%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W +   +  ++ MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
               + I+ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L   L      + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|238020705|ref|ZP_04601131.1| hypothetical protein GCWU000324_00595 [Kingella oralis ATCC 51147]
 gi|237867685|gb|EEP68691.1| hypothetical protein GCWU000324_00595 [Kingella oralis ATCC 51147]
          Length = 361

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 172/365 (47%), Positives = 234/365 (64%), Gaps = 11/365 (3%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            Y  QLAEK  RL  ++  F  P  Q+F S    YRMRAEF IWHD D + + MF    K
Sbjct: 2   PYTAQLAEKTQRLAALLAPFAAPAPQVFPSPESGYRMRAEFRIWHDSDQISYAMFAHGQK 61

Query: 69  ----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
                 +++ +F      INALM  ++  +   P L+ +L+Q ++L + S + +VTLIYH
Sbjct: 62  ASSASLIKLTHFQAVHSSINALMPRLLHRLSGCPALQTRLYQCEFLATLSGEMLVTLIYH 121

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LDD W+  A  L     AR   I +IGR+   KI L +D+V ERLTV G++  YRQ E
Sbjct: 122 RKLDDDWQVAARAL-----ARDLGIHIIGRSKGQKIVLSQDFVTERLTVNGQSYAYRQYE 176

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SFTQPNA +   ML W     +G  GDLLELYCGNGNF+L L+RHF RVLA E++K SV
Sbjct: 177 GSFTQPNAIVCQKMLAWACQQAQGAGGDLLELYCGNGNFTLPLSRHFRRVLATEVSKTSV 236

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRS 302
            AA++NIA N V+N++I R+S++EFT+A    R F RL +  I +  Y F TIF+DPPR+
Sbjct: 237 AAAQWNIAHNQVDNIQIARLSAEEFTEAFSGCRTFRRLAESGIALADYDFSTIFIDPPRA 296

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+D+AT+ +V  +  I+Y+SCNP++L  +L  L+ TH I+  ALFDQFP+T H+E GV+L
Sbjct: 297 GVDNATLQLVARFDRIIYVSCNPETLAANLQTLTQTHRIQAAALFDQFPFTPHIESGVML 356

Query: 363 VRKPS 367
            RK +
Sbjct: 357 TRKAA 361


>gi|116052866|ref|YP_793183.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|122257123|sp|Q02FV3|TRMA_PSEAB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|115588087|gb|ABJ14102.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 363

 Score =  367 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 168/359 (46%), Positives = 226/359 (62%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66
           Y  QL +K  RL  ++  F  P  +IF S   HYR+RAEF +W +   +  ++ MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEIFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
               + I+ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L   L      + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F  +FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGNVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|90021263|ref|YP_527090.1| tRNA (uracil-5-)-methyltransferase [Saccharophagus degradans 2-40]
 gi|122996287|sp|Q21KA1|TRMA_SACD2 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|89950863|gb|ABD80878.1| tRNA (uracil-5-)-methyltransferase [Saccharophagus degradans 2-40]
          Length = 365

 Score =  366 bits (940), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 164/359 (45%), Positives = 241/359 (67%), Gaps = 7/359 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-T 67
            Y+QQL +K    ++    F   ++++  S P HYRMRAEF +W  G + ++ M+     
Sbjct: 12  NYQQQLDDKEKATKEQFSDFWQGDIEVHPSPPSHYRMRAEFKMWQQGAEAFYAMYQPGEY 71

Query: 68  KERMRID-YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           K+ + ++  F  G+  I  LM +++  +    LLR +LFQ+++LT+ + +++ TLIYH+ 
Sbjct: 72  KKPVTLEWEFSVGAEKIVELMPKLLEIVNASELLRKRLFQVEFLTTTTGESVTTLIYHKP 131

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W+  A  L  +L+       +IGR+ K KI L +DYV+E LT++G    Y+QIE+ 
Sbjct: 132 LTEEWQAEANALASSLNTH-----IIGRSKKQKIVLTQDYVEETLTISGTPFTYKQIESG 186

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +   ML+W + AT  + GDL+ELYCGNGNF+L L+++FD+VLA E++K SV+A
Sbjct: 187 FTQPNAAVCQKMLQWAVDATANLGGDLVELYCGNGNFTLPLSKNFDKVLATEVSKTSVKA 246

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A YNI  N   N+ I RMSS+EFT+A+   REF RLKDI++ SY F T+FVDPPR+GLD+
Sbjct: 247 AEYNIEKNGCKNITIARMSSEEFTEALNGVREFRRLKDIELDSYNFSTVFVDPPRAGLDE 306

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  ++  + +I+YISCNPD+L  +L+ L  TH +ER ALFDQFPYT H ECGV+L +K
Sbjct: 307 DTEALISRFDNIIYISCNPDTLANNLANLCKTHKVERFALFDQFPYTDHRECGVILTKK 365


>gi|319943226|ref|ZP_08017509.1| tRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC 51599]
 gi|319743768|gb|EFV96172.1| tRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC 51599]
          Length = 425

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 170/380 (44%), Positives = 244/380 (64%), Gaps = 21/380 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S T +   Y++QL  K + L+ +     +P +++F S P HYRMRAEF IWH+ D + + 
Sbjct: 41  SETSVAADYDRQLDAKHEALKALFAGLDIPAIEVFASAPQHYRMRAEFRIWHEDDAICYA 100

Query: 62  MFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           MF    K       R++ F P    INALM  ++A    +P+LR + +Q+++L + S + 
Sbjct: 101 MFSPGQKASSATLQRVEQFAPACEAINALMPRLLAATSADPVLRRRWYQVEFLATLSGEM 160

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA--- 174
           +VT++YHR LDDAW   A +L+  L      I +IGR+   K  L +D+V ERL +    
Sbjct: 161 LVTMVYHRPLDDAWEAAARQLQATL-----GIHVIGRSRGQKRVLSQDFVTERLEIPGPA 215

Query: 175 ---GRTLIYRQIENSFTQPNAGINVHMLEWVLAATK----GIQGDLLELYCGNGNFSLVL 227
                  +YRQ E +FTQPNA +   M+ W   A +        DLLELYCGNGNF+L L
Sbjct: 216 GTPAAPFLYRQPEGAFTQPNARMCERMIGWACEAVQQAGISPASDLLELYCGNGNFTLPL 275

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDI 285
           +RHF +VLA E++K SV+AA++NI AN   NV+I R+S++E+TQAM+ ER F RL  ++I
Sbjct: 276 SRHFRQVLATEVSKTSVQAAQWNIQANARPNVRIARLSAEEYTQAMQGERSFRRLREQEI 335

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
            +  + F T+ VDPPR+G+DDAT+ ++Q +P+I+YISCNP +LC +L  L  THTIER+A
Sbjct: 336 SLAEHDFSTVLVDPPRAGVDDATLALLQRFPNIVYISCNPHTLCANLDTLCQTHTIERMA 395

Query: 346 LFDQFPYTRHMECGVLLVRK 365
           LFDQFP+T H ECGVLL ++
Sbjct: 396 LFDQFPFTPHTECGVLLRQR 415


>gi|15599914|ref|NP_253408.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|20178166|sp|Q9HV78|TRMA_PSEAE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|9950979|gb|AAG08106.1|AE004885_11 tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PAO1]
          Length = 363

 Score =  365 bits (938), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 166/359 (46%), Positives = 227/359 (63%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W +   +  ++ MF+Q  
Sbjct: 11  YAAQLEDKKSRLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNEKRHYAMFEQGD 70

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
               + ++ F   S  IN LM  + A    +P L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILLEDFPIASRRINELMPRLKAAW-ADPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +DDAWR+ A +L   L      + L+GR+   +I + RDYV+E L+VAGR   YRQ E +
Sbjct: 130 IDDAWRQAAEKLAAEL-----GVNLVGRSRGKRIVVGRDYVEEELSVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A      DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGQRDDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELARRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|78484518|ref|YP_390443.1| tRNA (uracil-5-)-methyltransferase [Thiomicrospira crunogena XCL-2]
 gi|123755299|sp|Q31JA4|TRMA_THICR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|78362804|gb|ABB40769.1| tRNA (uracil-5-)-methyltransferase [Thiomicrospira crunogena XCL-2]
          Length = 374

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 183/376 (48%), Positives = 240/376 (63%), Gaps = 13/376 (3%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M      + Y +Q AEK  RL Q++    +PN   F SEP HYR RAEF +WH+GD   +
Sbjct: 1   MLCQTYPETYAEQFAEKTHRLEQLLG--DLPNFDAFASEPEHYRARAEFRVWHEGDQTDY 58

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQQ+KE++ I +       I  LM ++MA I   P+LR KLFQ+D+L + S + +VT
Sbjct: 59  IMFDQQSKEKVAIHHCPMALESIATLMPKLMAHIVQTPVLRQKLFQVDFLATLSGEMLVT 118

Query: 121 LIYHRLLDD------AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           LIY + L              +   +AL        +IGRA K KICLD+DYV E+L V 
Sbjct: 119 LIYRKSLQTKTETGVENDVAWVDAANALRCELPITHIIGRARKQKICLDKDYVIEKLQVD 178

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWV----LAATKGIQGDLLELYCGNGNFSLVLARH 230
            +T IY+QIENSFTQPNA +  +ML W       A    Q DL+ELYCGNG+FS+ L+  
Sbjct: 179 HQTFIYQQIENSFTQPNAEMAQNMLHWARKVAAKANPDQQNDLIELYCGNGHFSIALSDQ 238

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           F RVLA EI+K SV +A++NI AN V+NV +V+M+++E + A++ E  F RLKDID+ +Y
Sbjct: 239 FHRVLATEISKTSVASAQFNIEANKVDNVTVVKMAAEEISAALQGE-TFFRLKDIDLSAY 297

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
            F TIFVDPPRSGLDD T  MV  + +I+YISCNP++L  DL  +  TH +   ALFDQF
Sbjct: 298 AFNTIFVDPPRSGLDDLTRQMVTEFDYIIYISCNPETLAHDLEAIRQTHEVLETALFDQF 357

Query: 351 PYTRHMECGVLLVRKP 366
           PYT H+E GV L RKP
Sbjct: 358 PYTHHIESGVFLKRKP 373


>gi|307721190|ref|YP_003892330.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas autotrophica DSM
           16294]
 gi|306979283|gb|ADN09318.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas autotrophica DSM
           16294]
          Length = 370

 Score =  365 bits (936), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 154/363 (42%), Positives = 223/363 (61%), Gaps = 6/363 (1%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +  + YE QL EK+   ++    +   ++ +++S   HYR R+EF IWH  DD+ + M
Sbjct: 12  CRVYENGYEAQLNEKLQINKERFAPYFSGDISVYKSLDEHYRARSEFKIWHIDDDISYAM 71

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
                K  + ID     +  I ALM ++++ I++  +   KLF  D+L+S S + +V+L+
Sbjct: 72  NHIDKKGVVLIDECPQVNEYIAALMPQLLSAIKVNDI-DFKLFGADFLSSSSGEIVVSLL 130

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD  W+E A ++   L+     I +IGR+ K K+ + +DY+ E L V      ++ 
Sbjct: 131 YHRALDVVWQEKAKKIAQDLN-----IYIIGRSRKQKVIIGQDYITETLHVNNDVYKFKY 185

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           IENSFTQPN  +N  M+ W  A     Q DLLELYCG GNF++  A+ F++VLA EI+K 
Sbjct: 186 IENSFTQPNPRVNEQMIAWAAAKFSDTQDDLLELYCGAGNFTIPFAKKFNKVLATEISKS 245

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           S+ AA+ N+  N V+N++ VRMS +EF  A+   REF R+KDIDI +Y   +IFVDPPRS
Sbjct: 246 SINAAKANMHLNDVHNIEFVRMSVEEFVDALEGVREFRRMKDIDIKNYTINSIFVDPPRS 305

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G+ + +      Y HI+YISCNP +L  DL IL  TH I  +ALFDQFPYT H+E GV L
Sbjct: 306 GMGEYSCKFASRYNHIVYISCNPQTLLDDLDILCKTHDITDMALFDQFPYTHHVEMGVKL 365

Query: 363 VRK 365
           ++K
Sbjct: 366 IKK 368


>gi|225024625|ref|ZP_03713817.1| hypothetical protein EIKCOROL_01502 [Eikenella corrodens ATCC
           23834]
 gi|224942588|gb|EEG23797.1| hypothetical protein EIKCOROL_01502 [Eikenella corrodens ATCC
           23834]
          Length = 364

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 170/368 (46%), Positives = 241/368 (65%), Gaps = 11/368 (2%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T    +Y  QL +K   L+Q    F     Q+F S   HYRMRAEF +WHDGD++ + MF
Sbjct: 2   TQPSPEYTAQLQQKAGYLKQRFAEFSPSEWQVFASPEKHYRMRAEFRVWHDGDNISYAMF 61

Query: 64  DQQTK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           +   K       RID     S  INA+M  ++A ++ +PLLR + +Q ++L++ S   +V
Sbjct: 62  EPGQKAGSASLRRIDSLPAASAAINAVMPRLLAAVQADPLLRERWYQCEFLSTLSGDMLV 121

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            +IYH+ L   W+  A RL+  L      I +IGR+   K+ L +D+V ERL   GR  +
Sbjct: 122 GMIYHKRLCGQWQAAAARLQREL-----GIMIIGRSRGQKLVLAQDFVTERLHADGRDWL 176

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YRQ E  F+QPNA +   ML+W   A  G+ GDLLELYCGNGNF+L LAR+F RVLA E+
Sbjct: 177 YRQYEGGFSQPNALVCQKMLDWACGAAAGLGGDLLELYCGNGNFTLPLARYFRRVLATEL 236

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFV 297
           +K SV+AA++NI AN V N+++ R+S++EFTQA    R F RL++  I++  Y F T+FV
Sbjct: 237 SKTSVQAAQWNIEANGVANIRLARLSAEEFTQAYHGVRTFRRLQEQGIELADYAFSTVFV 296

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPR+G+DDAT+ ++Q + +I+Y+SCNP++L  +L+ L+ TH IER ALFDQFP+T H+E
Sbjct: 297 DPPRAGIDDATLRLLQNFDNIIYVSCNPETLHANLTTLTQTHRIERAALFDQFPFTPHIE 356

Query: 358 CGVLLVRK 365
            GVLL R+
Sbjct: 357 SGVLLRRR 364


>gi|217970373|ref|YP_002355607.1| tRNA (uracil-5-)-methyltransferase [Thauera sp. MZ1T]
 gi|217507700|gb|ACK54711.1| tRNA (uracil-5-)-methyltransferase [Thauera sp. MZ1T]
          Length = 368

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 170/369 (46%), Positives = 234/369 (63%), Gaps = 12/369 (3%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            +   +YE QLA K+ R R     F +P   +FRS P+HYR+RAEF +WH  D + + MF
Sbjct: 5   CIDPARYEDQLAAKLARYRSDFAEFDLPEPAVFRSAPLHYRLRAEFRLWHHEDRIDYAMF 64

Query: 64  DQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           D    K+ + ++ F   +  I  LM  +   ++    LR K+FQ+D+L + S + +V+L+
Sbjct: 65  DSADPKQPILLETFPAAAEPIAKLMPRLRDALQASEALRRKIFQVDFLATLSGECLVSLV 124

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD  W   A        A    IQ+IGR+ K KI L+RD+V E L V G+ L Y+Q
Sbjct: 125 YHRPLDADWETAARA-----LAAALDIQVIGRSRKQKIVLERDWVQEVLEVDGQRLRYQQ 179

Query: 183 IENSFTQPNAGINVHMLEWVLA------ATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
            E SFTQPN G+N HML W  A      A     GDLLELYCGNGNF++ LA  F RVLA
Sbjct: 180 FEGSFTQPNGGVNQHMLAWARAQAKAVGARPQGPGDLLELYCGNGNFTVALAPLFGRVLA 239

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            E++K SV AA  N+A N V NV +VRM+S+E + A+   RE+ R++ +D+  YRF T+F
Sbjct: 240 TEMSKTSVRAAHTNLADNGVANVTMVRMASEEISDALAGGREYRRMQGVDLAGYRFSTLF 299

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           VDPPR+GLD+ T+ + + + HILYISCNP++L  +++ L+TTH I   A FDQFPYT H+
Sbjct: 300 VDPPRAGLDEGTIALAKGFEHILYISCNPETLRANVAALATTHRIAAAAAFDQFPYTHHL 359

Query: 357 ECGVLLVRK 365
           ECG+LL R+
Sbjct: 360 ECGLLLQRR 368


>gi|152990451|ref|YP_001356173.1| tRNA (uracil-5-)-methyltransferase [Nitratiruptor sp. SB155-2]
 gi|262827911|sp|A6Q2V7|TRMA_NITSB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|151422312|dbj|BAF69816.1| tRNA (uracil-5-)-methyltransferase [Nitratiruptor sp. SB155-2]
          Length = 360

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 158/363 (43%), Positives = 235/363 (64%), Gaps = 13/363 (3%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S +L    YE+QL +KV    ++         +IF S+   YR RAEF  + DG+   + 
Sbjct: 11  SCSLYEGGYEEQLQKKVHEFEKLFG----LEPEIFPSKQSRYRARAEFR-YIDGE---YA 62

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M     K  + ID        I  LM ++   I    +L  +L+++D+L+  S +++VT+
Sbjct: 63  MHRLHEKGLVTIDACEMVLESIYELMSKLRLLINKHEILSNRLYRVDFLSGLSGESLVTM 122

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YHR +D+AW + A  +  ALH     I ++GR+   KI + ++Y+ E+L V  +  ++R
Sbjct: 123 VYHRPIDEAWEKAANEIAKALH-----IDIVGRSRGKKIVIGKEYITEKLPVFEKEFLFR 177

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             E SFTQPN  +N+ M+EW     K +QGDLLELYCG GNF+L L+R+F++VLA E+ K
Sbjct: 178 HYEGSFTQPNPYVNIKMIEWAGRIAKDLQGDLLELYCGAGNFTLPLSRYFEKVLATEVNK 237

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S++AA+ N+A N + NV+ VR+SS+E TQA+R  R+F RL++ID+HSY F+T+FVDPPR
Sbjct: 238 SSIKAAKENVALNGIENVEFVRLSSQEVTQALRGVRDFRRLENIDLHSYNFQTVFVDPPR 297

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
            GLDD T  +V+ + +I+YISCNP +L RDL  LS THT++++A+FDQFPYT H+E GV 
Sbjct: 298 CGLDDDTRELVREFDNIVYISCNPQTLHRDLEELSKTHTVQKVAVFDQFPYTPHLESGVY 357

Query: 362 LVR 364
           L R
Sbjct: 358 LTR 360


>gi|146329832|ref|YP_001210047.1| tRNA (uracil-5-)-methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|262827669|sp|A5EXH9|TRMA_DICNV RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|146233302|gb|ABQ14280.1| tRNA (uracil-5)-methyltransferase [Dichelobacter nodosus VCS1703A]
          Length = 361

 Score =  362 bits (930), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 163/366 (44%), Positives = 233/366 (63%), Gaps = 10/366 (2%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           + +  Y++QL  K  +L  ++  F  P ++I+ S   HYRMRAEF IW D + L++ M  
Sbjct: 1   MTMSNYQRQLFAKHQQLHALLRPFSAPKIRIYPSPEKHYRMRAEFRIWRDDEQLFYAMSR 60

Query: 65  QQT---KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
                 +  +R+  F P  + I+  M  ++  +R +P+L  KL+++ +L S   + +V+L
Sbjct: 61  GGALTAQNIVRLHNFPPAYITIDRCMPLLLDALRADPVLHHKLYEVHFLASLRGELLVSL 120

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYHR L D W   A  L     A+++ I LIGR+ K KI L+RD++ E L V GR   Y 
Sbjct: 121 IYHRALTDEWTAAAKAL-----AKRFHILLIGRSRKQKITLERDFILETLNVDGRAFHYH 175

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q E SF+QPNA +   ML W  A      GDLLELYCGNGNF+L LA HF RVLA EI+K
Sbjct: 176 QYEQSFSQPNAYVCQKMLRWACAQAGENAGDLLELYCGNGNFTLPLASHFRRVLATEISK 235

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDP 299
            S+ A + NI  N  NN+ + R+S++EFTQA ++ER+F RLK   I++  Y+F+T+FVDP
Sbjct: 236 SSITALQENIFLNQTNNIAVARLSAEEFTQAWQKERDFYRLKQAGIELADYQFETVFVDP 295

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+G+DD T+ ++Q +P I+YISCNP +L  +L  L+ TH +   ALFDQFP T H+ECG
Sbjct: 296 PRAGIDDNTLFLLQKFPKIIYISCNPHTLAANLQTLTQTHELCAAALFDQFPDTPHIECG 355

Query: 360 VLLVRK 365
           V+L +K
Sbjct: 356 VVLRKK 361


>gi|119503351|ref|ZP_01625435.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2080]
 gi|119460997|gb|EAW42088.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2080]
          Length = 366

 Score =  362 bits (928), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 161/362 (44%), Positives = 223/362 (61%), Gaps = 8/362 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            D YEQ LA K+  L         P   + +S P+ +R+RAEF IWHDGDDL++ MF   
Sbjct: 8   PDNYEQLLALKIAPLIDAFTELGAPAPVVVKSPPLAFRLRAEFRIWHDGDDLFYAMFRPG 67

Query: 67  T-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + K+ + ++ F   S  I  LM E++  +R    LR +LFQI++L++ +   +VTLIYHR
Sbjct: 68  SPKDPVAVERFPIASQAIQQLMPELLQGLRNNTQLRQRLFQIEFLSTLTGDMLVTLIYHR 127

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDD+W   A  L   L      I+LIGR+ K K  L+ D V E L +  +   ++Q + 
Sbjct: 128 ALDDSWEIEAKELAQHL-----GIKLIGRSRKQKKVLELDSVQETLCINDKQYHFKQPDQ 182

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           +FTQPN  +N  M+EW   A K +  DLLELYCG GNFSL LA  F+RVLA E++K ++ 
Sbjct: 183 AFTQPNGHVNQRMIEWADRACKDLSADLLELYCGIGNFSLPLAHRFNRVLATEVSKAAIA 242

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSG 303
           AA  N   N +NNV+ +R+S++E T+AM   R F RL    + +  Y+  T+ VDPPR+G
Sbjct: 243 AAIENRKRNAINNVEFIRLSAQEMTEAMSGARPFRRLAHLPVPLTEYQLDTLLVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LDDAT+ +   + +ILYISCNP +L  +L  L  TH I +LA FDQFPYT H+E GVLL 
Sbjct: 303 LDDATLALASGFRNILYISCNPHTLLENLKALEPTHQITQLAFFDQFPYTHHLESGVLLT 362

Query: 364 RK 365
           R+
Sbjct: 363 RR 364


>gi|90415962|ref|ZP_01223895.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2207]
 gi|90332336|gb|EAS47533.1| tRNA (uracil-5-)-methyltransferase [marine gamma proteobacterium
           HTCC2207]
          Length = 367

 Score =  360 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 173/360 (48%), Positives = 228/360 (63%), Gaps = 9/360 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Y   L  K++R    +     P +++F S    +RMRAEF IWH+    ++ M     K 
Sbjct: 11  YPAALNNKLERFYGTLDGLSFPEVEVFDSAASGFRMRAEFRIWHEDGVAHYAMNRPGEKR 70

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
              I  F     LI  LM  ++A+I     L  KLF +++LT+ S +A++TLIYHR +D+
Sbjct: 71  PYVISEFPIAGQLIGELMTPLLASINASTTLSRKLFSLEFLTTLSGEALITLIYHRPVDE 130

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            W+  A  L       ++ I +IGR+ K K  L RDYV E LTV G    Y+QIE+ FTQ
Sbjct: 131 QWQLAAKAL-----EAEHSIMVIGRSRKQKTVLTRDYVTECLTVDGVQYHYQQIESGFTQ 185

Query: 190 PNAGINVHMLEWVLAATKGIQ----GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           PNA +N  ML W     K I     GDL+ELYCGNGNF+ VLA+HF  VLA EI+K SV 
Sbjct: 186 PNAKVNEKMLSWASGCCKSIDDVASGDLVELYCGNGNFTAVLAQHFKSVLATEISKISVR 245

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           +A+ N A N VNNV +VRMSS+EFTQA+  ER F RLKDID++SY F TIFVDPPR+GLD
Sbjct: 246 SAQTNFALNDVNNVTVVRMSSEEFTQALNGERPFRRLKDIDLNSYGFSTIFVDPPRAGLD 305

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + T+ + Q + +ILYISCNP++L  +L  L+ TH I R A+FDQFP+T H+E GVLL R+
Sbjct: 306 EGTLQLAQRFDNILYISCNPETLRANLDSLTETHDIVRSAIFDQFPWTHHLESGVLLKRR 365


>gi|71907452|ref|YP_285039.1| tRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica RCB]
 gi|123627504|sp|Q47F12|TRMA_DECAR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|71847073|gb|AAZ46569.1| tRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica RCB]
          Length = 362

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 178/363 (49%), Positives = 231/363 (63%), Gaps = 6/363 (1%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           T     Y  QLA KV    Q    F V N  I  S P+HYRMRAEF IWH+GDDL + MF
Sbjct: 5   TYDPADYPTQLATKVAHFEQNFAPFGVANTAIHASAPLHYRMRAEFRIWHEGDDLNYAMF 64

Query: 64  D-QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           D    K+ + ++ F P +  I  LM  +   +R    LR +LFQ D+L + S + +VTLI
Sbjct: 65  DPADPKQPITLETFPPAAESICHLMPRLRDKLRGNESLRRRLFQADFLATLSGEMLVTLI 124

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+AW   A  +   L      I LIGR+   KI LDRD+V E   + GR L Y+Q
Sbjct: 125 YHRQLDEAWEAAAREMAAEL-----GIGLIGRSRGQKIVLDRDWVLEGFELNGRQLRYKQ 179

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           +E SFTQPN G+N  ML W      G  G+L+ELYCGNGNF++ L+  F+RVLA E++K 
Sbjct: 180 VEGSFTQPNGGVNRQMLGWACQQAAGFGGNLVELYCGNGNFTIALSPLFERVLATEVSKS 239

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           SV AA+YN+AAN V NV +VRMSS+EF+ A+    EF RLKDID+  +R  T+FVDPPRS
Sbjct: 240 SVHAAQYNLAANQVENVALVRMSSEEFSNALAGREEFQRLKDIDLEPFRHATLFVDPPRS 299

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           GLD  T+ + + +  ILYISCN ++L  ++  L  TH I+  A+FDQFPYT H+ECG+LL
Sbjct: 300 GLDAVTLELARGFDRILYISCNQETLRENVIALQDTHEIKASAVFDQFPYTHHLECGLLL 359

Query: 363 VRK 365
            R+
Sbjct: 360 TRR 362


>gi|291333829|gb|ADD93512.1| tRNA uracil 5 methyltransferase [uncultured marine bacterium
           MedDCM-OCT-S04-C13]
          Length = 365

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 165/363 (45%), Positives = 226/363 (62%), Gaps = 8/363 (2%)

Query: 5   LLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +DQY+ QL +K+    Q+M      + +  ++ S    +RMRAEF +WH+   + + M
Sbjct: 6   QDLDQYQSQLDKKLVNFYQIMAEAGVSIDSATVYPSPSSGFRMRAEFRLWHEHGRVNYAM 65

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
                K    I  F  G+ LIN LM  ++A +     L  K F  ++LT+ S +A++TLI
Sbjct: 66  NRPGEKRPYIIQDFPIGAPLINQLMPPLLAALNGNETLSRKCFSAEFLTTSSGEALITLI 125

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YHR LD+ W   A  L+  L+       +IGR+ K K+ LD+DYV E L V  R   Y+Q
Sbjct: 126 YHRPLDEQWEVEARALQSELNT-----AIIGRSRKQKLVLDQDYVTEVLQVGDRQYSYQQ 180

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           +E+ FTQPNA IN  ML W      G    DLLELYCGNGNF+  LARHF+ VLA EI+K
Sbjct: 181 VESGFTQPNATINSQMLNWASNCLAGSNKRDLLELYCGNGNFTAPLARHFNAVLATEISK 240

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            SV +A  N AAN ++N+++VR+S++E TQA+ ++R F RL  IDI SY F T+FVDPPR
Sbjct: 241 VSVNSALTNFAANQIDNIEVVRLSAEELTQALNKQRPFRRLAHIDIDSYDFSTVFVDPPR 300

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GLD  T  +V  +  ILYISCNP++L ++L  +S TH IE  A+FDQFP+T H+E GVL
Sbjct: 301 AGLDADTEKLVCRFDRILYISCNPNTLAQNLVQISKTHRIEAAAVFDQFPWTAHLESGVL 360

Query: 362 LVR 364
           L R
Sbjct: 361 LSR 363


>gi|329895439|ref|ZP_08271020.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium
           IMCC3088]
 gi|328922322|gb|EGG29668.1| tRNA (Uracil54-C5-)-methyltransferase [gamma proteobacterium
           IMCC3088]
          Length = 365

 Score =  358 bits (919), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 164/361 (45%), Positives = 222/361 (61%), Gaps = 8/361 (2%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT- 67
           +Y+  L EK  R  ++   F      +  S    +RMRAEF IWHDGDDL++ MFD+   
Sbjct: 10  RYQALLNEKTRRCTELFAPFTDLQPSVHDSPQDAFRMRAEFRIWHDGDDLFYAMFDKDNP 69

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           KE +RID +  GS  I  LM  +   I  +P+LR +LFQI++LTS + +A+VTLIYH+ L
Sbjct: 70  KEPLRIDSYPFGSPTIQRLMPALRTAIIDKPVLRERLFQIEFLTSTTKEALVTLIYHKAL 129

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
            D W   A  L   L  R     +IGR+ K K+ L+   + E L +      YR  E  F
Sbjct: 130 SDDWEASARALAKTLDCR-----IIGRSRKQKVVLNGSSISETLNINHSNYHYRYYEQGF 184

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQPNA IN+ M+EWV         DL+ELYCG GNF++ L++ F RVLA E+AK SV AA
Sbjct: 185 TQPNAAINIKMIEWVSQHFGDTSRDLIELYCGLGNFTVPLSQKFRRVLATEVAKSSVHAA 244

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSGLD 305
             NIA N++ N+ I R+++ E  QA+R ER F RL  +   +  Y F  I VDPPR+GLD
Sbjct: 245 HENIALNNIENIAIARLNAAETAQALRGERAFKRLAALPHALGEYDFAAILVDPPRAGLD 304

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ + Q+   I YISCNP++L RDL  L+ THTI+  A+FDQFPYT H ECGV+L ++
Sbjct: 305 EDSLRLAQSIDSIAYISCNPETLARDLEPLTQTHTIDAWAVFDQFPYTHHTECGVILSKR 364

Query: 366 P 366
           P
Sbjct: 365 P 365


>gi|308801713|ref|XP_003078170.1| tRNA (ISS) [Ostreococcus tauri]
 gi|116056621|emb|CAL52910.1| tRNA (ISS) [Ostreococcus tauri]
          Length = 415

 Score =  355 bits (910), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 161/373 (43%), Positives = 219/373 (58%), Gaps = 19/373 (5%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQ--VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
            + Y ++LAEK+   R             +   S    +RMRAEF +WHDGD  Y+ M D
Sbjct: 48  PESYSEELAEKIAIARSHFDDVCALPTQTETHESARTEFRMRAEFKVWHDGDRSYYAMSD 107

Query: 65  QQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
               KE + I  F   S  I  LM  ++  +     LR KLFQ ++LT+ +  A+V+L+Y
Sbjct: 108 SDRPKEPVEIADFPMASKKIRELMPALLREVTKTETLRRKLFQANFLTTTTGDAVVSLLY 167

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LDD W   A  +R  L      I +IGRA K K  L +D+V E++ V GR   Y+Q+
Sbjct: 168 HRQLDDNWEREAEAMRARL-----GIDIIGRARKQKKVLAKDFVTEKVVVDGREFSYKQL 222

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-----------LLELYCGNGNFSLVLARHFD 232
           E SFTQPNAGI   MLEW  +       D           LLELYCGNG+F++ LA  F 
Sbjct: 223 EGSFTQPNAGIAAQMLEWARSVATNDSPDGEGSVDVSTRDLLELYCGNGHFTIALAPLFR 282

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           + LA EI+K SV AA+ N+AAN V+N+ I R+S++E + A+   RE+ RLKDI++ SY  
Sbjct: 283 KCLATEISKSSVAAAQVNMAANGVDNLVIARLSAEELSDALNGGREYTRLKDINLASYDL 342

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
            TI VDPPR+G+ D        +  I+YISCNP++L RD  +LS TH ++R A+FDQFPY
Sbjct: 343 STILVDPPRAGMGDEVSTFCAQFERIIYISCNPETLARDCRVLSKTHDVKRFAVFDQFPY 402

Query: 353 TRHMECGVLLVRK 365
           T H+E GVLL ++
Sbjct: 403 TPHLESGVLLKKR 415


>gi|145344269|ref|XP_001416659.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576885|gb|ABO94952.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 418

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 155/375 (41%), Positives = 215/375 (57%), Gaps = 21/375 (5%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQ--VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
              Y+++L EK    R             + F S    +RMRAEF +WHDGD  Y  M D
Sbjct: 48  PSSYDEELREKTAHARAHFDGVATLPSRTETFESAREEFRMRAEFKVWHDGDRSYFAMCD 107

Query: 65  QQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
               K+ + +  F   S  I  LM E++  +     LR KLFQ ++LT+ +  A+V+L+Y
Sbjct: 108 SDRPKDPVEVVDFPMASARIRELMPELLREVTATETLRRKLFQANFLTTTTGDAVVSLLY 167

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           HR LD+ W   A  +R  L      I +IGRA K K+ L +D+V E++ + G+   Y+Q+
Sbjct: 168 HRQLDEDWEREAEAMRARL-----GIDVIGRARKQKLVLAKDFVTEKVLIDGKEFSYKQL 222

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDL-------------LELYCGNGNFSLVLARH 230
           E SFTQPNAGI   ML W  +A      D+             LELYCGNG+F++ LA  
Sbjct: 223 EGSFTQPNAGIAAQMLAWARSAAVSDSPDVVAAATPRDANRDFLELYCGNGHFTIALAPL 282

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           F + LA EI+K SV AA  N+AAN ++NV   R+S++E   A+   RE+ RLKDID+ +Y
Sbjct: 283 FRKCLATEISKSSVAAAHVNMAANGIDNVVTARLSAEELCDALDGGREYTRLKDIDLTTY 342

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
              T+ VDPPR+G+ D        +  I+YISCNP++L RD  IL  TH I+R A+FDQF
Sbjct: 343 DLSTVLVDPPRAGMGDEVSKFCARFDRIIYISCNPETLARDCKILGETHEIKRFAVFDQF 402

Query: 351 PYTRHMECGVLLVRK 365
           PYT H+E G LLV++
Sbjct: 403 PYTPHLESGALLVKR 417


>gi|152985732|ref|YP_001350760.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PA7]
 gi|166988118|sp|A6VCH5|TRMA_PSEA7 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|150960890|gb|ABR82915.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas aeruginosa PA7]
          Length = 363

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 164/359 (45%), Positives = 225/359 (62%), Gaps = 9/359 (2%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQ- 66
           Y  QL +K  RL  ++  F  P  ++F S   HYR+RAEF +W +   ++ ++ MF+Q  
Sbjct: 11  YAAQLEDKKARLAGLLAPFAAPAPEVFESPREHYRLRAEFRLWRETGNENRHYAMFEQGD 70

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
               + I+ F   S  IN LM  +      EP L  KLFQ+++LT+ +  A++TL YHR 
Sbjct: 71  KHTPILIEDFPIASRRINELMPRLKDAW-AEPALGFKLFQVEFLTTLAGDALITLCYHRP 129

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +D AW++ A        A +  + L+GR+   +I + RDYV+E L VAGR   YRQ E +
Sbjct: 130 IDAAWQQAAEA-----LAAELGVSLVGRSRGKRIVVGRDYVEEELLVAGRRFRYRQPEGA 184

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N  ML W   A    + DLLELYCGNGNF+L LA    +VLA EI+K SV A
Sbjct: 185 FTQPNGEVNQKMLGWAYEALGEREDDLLELYCGNGNFTLPLATRVRKVLATEISKSSVNA 244

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N+A N V+NV +VR+S++E TQA+   R F RL DID+ SY F ++FVDPPR+G+D 
Sbjct: 245 ALANLADNAVDNVSLVRLSAEELTQALNEVRPFRRLADIDLKSYAFGSVFVDPPRAGMDP 304

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            T  + + +  ILYISCNP++L ++++ L  TH I R ALFDQFPYT HME GVLL R+
Sbjct: 305 DTCELTRRFERILYISCNPETLAQNIAQLHDTHRISRCALFDQFPYTHHMESGVLLERR 363


>gi|119897603|ref|YP_932816.1| tRNA (uracil-5-)-methyltransferase [Azoarcus sp. BH72]
 gi|262827635|sp|A1K524|TRMA_AZOSB RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|119670016|emb|CAL93929.1| tRNA (uracil-5-)-methyltransferase [Azoarcus sp. BH72]
          Length = 364

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 170/357 (47%), Positives = 230/357 (64%), Gaps = 6/357 (1%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD-QQT 67
           +YE QLA K+ R +       +P  ++FRSEP+HYR+RAEF IWH    L + MFD    
Sbjct: 10  EYETQLAAKIARFKSDFAPLDLPEPEVFRSEPLHYRLRAEFRIWHSEGRLDYAMFDPADP 69

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           K  + ID F   +  I A M  +   +     LR KLFQ+++L + S + +++L+YHR L
Sbjct: 70  KRPVLIDGFPAAAAPIAAAMPVLRERVMASEPLRRKLFQVEFLATLSGELMISLVYHRPL 129

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           +  W   A  L  A+      +QLIGR+ K KI L+RD+V E   + GRTL Y+QIE SF
Sbjct: 130 EADWEAAARELAAAM-----GVQLIGRSRKQKIVLERDWVLESFELDGRTLHYQQIEGSF 184

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           +QPN G+N  ML W     +G   DLLELYCGNGNF++ LA  F +VLA E++K SV AA
Sbjct: 185 SQPNGGVNRQMLVWARRQAEGSGADLLELYCGNGNFTVALAPLFGKVLATEMSKSSVRAA 244

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            YN+AAN V+NV +VRM+S+E + A+   R + R++ ID+  YRF T+FVDPPRSGLD+A
Sbjct: 245 HYNLAANAVDNVTMVRMASEEISDALAGGRAYRRMQGIDLAGYRFGTLFVDPPRSGLDEA 304

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           TV + + +  ILYISCNP +L  +++ L  TH I   A FDQFPYT H+ECGVLL +
Sbjct: 305 TVALARRFDRILYISCNPQTLHDNIAALRDTHGIAAAAAFDQFPYTHHLECGVLLQK 361


>gi|313682239|ref|YP_004059977.1| tRNA (uracil-5-)-methyltransferase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155099|gb|ADR33777.1| tRNA (uracil-5-)-methyltransferase [Sulfuricurvum kujiense DSM
           16994]
          Length = 371

 Score =  352 bits (903), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 156/364 (42%), Positives = 218/364 (59%), Gaps = 6/364 (1%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S     + YE QL  KV  ++++       N+ +  S    YR RAEF I+HD   + + 
Sbjct: 11  SCRDYEEGYEGQLERKVSAVQELFFPLYSGNITVCPSPAERYRSRAEFKIYHDDGGISYA 70

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M     +  ++I+     S  I ++M +++  I    +   KLF +D+L S   +  +++
Sbjct: 71  MNRLDRQGALKIERCGIVSPSIASVMEKLLIEISDLGI-SHKLFGVDFLASGEGEITLSM 129

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YH+ LDD W+  A  L   L      + +IGR+ K K+ L +DYV E L + GR   Y 
Sbjct: 130 LYHKALDDEWKSKAHELEKRL-----GVYVIGRSRKQKVVLSQDYVTETLNIGGRMYRYI 184

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            IENSFTQPN  +N  M+ W L     I GDLLELYCG GNF++  A  FDRVLA EI+K
Sbjct: 185 HIENSFTQPNPRVNEQMITWSLGQIDKIGGDLLELYCGAGNFTIPFATKFDRVLATEISK 244

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S+ AA+ N+A N V N++ VR+S++EFTQA+   REF RL+ +++  Y  KT+FVDPPR
Sbjct: 245 ASIHAAKQNMALNGVGNIEFVRLSAEEFTQALDGVREFRRLEGLNVADYHLKTLFVDPPR 304

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GL +        + HILYISCNP++L RDL ILS THTIE +A FDQFPYT H+E GV 
Sbjct: 305 AGLGEEPCAFASRFDHILYISCNPETLLRDLEILSRTHTIEAMAAFDQFPYTHHLEMGVK 364

Query: 362 LVRK 365
           L +K
Sbjct: 365 LTKK 368


>gi|159462564|ref|XP_001689512.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii]
 gi|158283500|gb|EDP09250.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii]
          Length = 364

 Score =  352 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 165/369 (44%), Positives = 228/369 (61%), Gaps = 13/369 (3%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            +  + Y+ QL  K+ +L+Q+   F  P L++F S P HYRMR+EF +      L+    
Sbjct: 2   AIDAEDYDGQLDRKLTKLKQLFQEFDPPQLEVFTSPPTHYRMRSEFTVEQRDGPLHFKGG 61

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
             +   R+R+D F   +  +N LM  +       P LR +LFQ+++ T+ +  A+VTL+Y
Sbjct: 62  KPKGPRRVRVDTFPVATKQVNELMAVVREEADKTPELRQRLFQVNFHTTLAGDAMVTLLY 121

Query: 124 HRLLDDAWRECAIRLRD------ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           HR L   W+  A RLRD         A   +  +IGR+ K KI LD D+V ERLTV GRT
Sbjct: 122 HRKLGPEWQAAAERLRDALAATPTAAAAGVRPHVIGRSRKQKIALDADFVLERLTVGGRT 181

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
            + +Q+E SF+QPN  +  HML W          DLLELYCGNGNF++ L+ +F RV+A 
Sbjct: 182 FVQKQVEGSFSQPNGHVCQHMLTWA------QDDDLLELYCGNGNFTIPLSANFRRVVAT 235

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI-DIHSYRFKTIF 296
           E+AK SVEAARYN+ AN V+NV + RM+S+EF   MR      RL+ +    + R +TI 
Sbjct: 236 EVAKSSVEAARYNMEANGVSNVFLARMASEEFAVTMRERGSRRRLEGLEGWEALRLRTIL 295

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           VDPPR+GLDD TV +++ +  I+YISCNPD+LC +L  ++ TH I R A FDQFPYT H+
Sbjct: 296 VDPPRAGLDDFTVELLKEFDRIVYISCNPDTLCANLKAIAPTHRIARFAAFDQFPYTHHL 355

Query: 357 ECGVLLVRK 365
           ECGV LVR+
Sbjct: 356 ECGVYLVRR 364


>gi|149193955|ref|ZP_01871053.1| tRNA (uracil-5-)-methyltransferase [Caminibacter mediatlanticus
           TB-2]
 gi|149135908|gb|EDM24386.1| tRNA (uracil-5-)-methyltransferase [Caminibacter mediatlanticus
           TB-2]
          Length = 363

 Score =  351 bits (901), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 144/365 (39%), Positives = 219/365 (60%), Gaps = 15/365 (4%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S  L    YE+QL  K D+L++M   F++P +++   +  H+R RAEF +WH+GD  Y+ 
Sbjct: 11  SCVLWQVPYEEQLKMKKDKLKEMFSKFEIPEIEVIYDKDEHFRARAEFRVWHEGDKTYYA 70

Query: 62  MFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           M  ++   +  + I+        I  LM ++M+ I     LR KL+++ +L++   + IV
Sbjct: 71  MRKRKEEGRGVIPIEECKIVDKAIYELMPKLMSEIEKNQNLRLKLYEVHFLSNSKGEVIV 130

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TLIYHR +D++  E   RL+D      + ++        K   D++Y+ E L + G+T  
Sbjct: 131 TLIYHRKVDESIAEDIKRLKDKFKNVDFIVR----KKGRKYIFDKNYLIEELEIKGKTYK 186

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+ IEN+FTQPN  IN  M+ WVL  T  ++GDL+ELYCGNGNF++ L+ +F +V+A EI
Sbjct: 187 YKIIENTFTQPNREINKKMISWVLDNTSNLKGDLVELYCGNGNFTIPLSENFRKVVATEI 246

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              S+EAA YN   N+  N+  + MS+ EF++ +++   FN        SY  K + +DP
Sbjct: 247 NPESIEAATYNAEINNRKNISFLAMSAAEFSE-LKKTGFFN--------SYDLKNVLIDP 297

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLD+ +   V  + +I+YISCNP++L RDL  LS    I+  A FDQFPYT HMECG
Sbjct: 298 PRAGLDEKSRKFVNEFDNIIYISCNPETLKRDLETLSKNRKIKAFAFFDQFPYTNHMECG 357

Query: 360 VLLVR 364
           V+L R
Sbjct: 358 VVLER 362


>gi|330895517|gb|EGH27828.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 333

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 156/336 (46%), Positives = 208/336 (61%), Gaps = 6/336 (1%)

Query: 31  PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE-RMRIDYFMPGSLLINALMIE 89
           P  Q+F S   HYR+RAEF +W +    Y+ MF        + ++     S  INALM  
Sbjct: 3   PEPQVFDSPREHYRLRAEFRLWREDQKRYYAMFAPGDNRTPILLEGLPIASERINALMPV 62

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           +       P L  KLFQ+D+LT+ +  A++TL YHR LD  W+  A +      A +  +
Sbjct: 63  LRERWEASPTLNHKLFQVDFLTTLAGDAMITLCYHRPLDAEWQAAAEQ-----LAAELDV 117

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
            LIGR+   K+ +  DYV E+L VAGRT  YRQ E +FTQPN  +N  ML W   A    
Sbjct: 118 SLIGRSKGQKLVIGHDYVTEKLDVAGRTFSYRQPEGAFTQPNGTVNGKMLNWAFDALGER 177

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q DLLELYCGNGNF+L LA    +VLA EI+K SV AA  N+  N V+NV +VR+S++E 
Sbjct: 178 QDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLDENGVDNVTLVRLSAEEL 237

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
           T+A+   R F RL  +D+ SY F ++FVDPPR+G+D  T  + + +  ILYISCNP++L 
Sbjct: 238 TEALNEVRPFRRLHGVDLKSYDFGSVFVDPPRAGMDPDTCELTRRFERILYISCNPETLA 297

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +++ L  TH +ER ALFDQFPYT HME GVLLVR+
Sbjct: 298 ANIAQLHDTHRVERCALFDQFPYTHHMESGVLLVRR 333


>gi|296274443|ref|YP_003657074.1| tRNA (uracil-5-)-methyltransferase [Arcobacter nitrofigilis DSM
           7299]
 gi|296098617|gb|ADG94567.1| tRNA (uracil-5-)-methyltransferase [Arcobacter nitrofigilis DSM
           7299]
          Length = 373

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 151/368 (41%), Positives = 220/368 (59%), Gaps = 12/368 (3%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD---- 57
           S TL    YE+QLA K+ R +Q        + +I RSE  H+R RAEF  W + DD    
Sbjct: 11  SCTLYHMNYEEQLAYKLSREKQRFQDITTMDFEIIRSEEEHFRNRAEFRFWKNYDDEKNP 70

Query: 58  -LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L + M     K  + +D     S  I+ LM +++  I    +L  K++ +++L S ++ 
Sbjct: 71  TLSYGMTSFD-KNILEVDKCSIVSKQIDELMPKLLDEISQSEILNYKIYSVEFLGSTTND 129

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +VTLIYH+ LD  W + A  +++ L+     I++IGR+ K KI L  D++ E L +   
Sbjct: 130 MLVTLIYHKKLDTTWEKVAKEVQERLN-----IKIIGRSRKQKIVLKEDFIKEELNINDN 184

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
              +   E  FTQPN  +N+ M+EWVL      + DL ELYCG GNF++ L+  F++VLA
Sbjct: 185 VFKFHYKEGGFTQPNTKVNIKMIEWVL-NNIETKDDLCELYCGGGNFTIPLSTKFNKVLA 243

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            EI+K S+ +A  N   N++ N+  +RMS++EF +A+   REF RLKDI++  Y F TIF
Sbjct: 244 TEISKTSINSALLNCELNNITNIDFIRMSAEEFVEALNSVREFRRLKDINLSDYNFSTIF 303

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           VDPPRSGLDD T  +V+ Y  I+YISCNP++L RDL  L  +H I   +LFDQF Y+ H+
Sbjct: 304 VDPPRSGLDDTTRELVKNYEQIIYISCNPETLHRDLKELIKSHQILNFSLFDQFSYSGHI 363

Query: 357 ECGVLLVR 364
           E GV+L +
Sbjct: 364 ETGVILKK 371


>gi|78777216|ref|YP_393531.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
 gi|123550331|sp|Q30RT5|TRMA_SULDN RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|78497756|gb|ABB44296.1| tRNA (uracil-5-)-methyltransferase [Sulfurimonas denitrificans DSM
           1251]
          Length = 369

 Score =  350 bits (897), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 156/364 (42%), Positives = 222/364 (60%), Gaps = 7/364 (1%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD-DLYHI 61
             +    YE QL++KV+  +++   F +  + +F S   +YR R+EF IWH+GD  + + 
Sbjct: 12  CIVYDGGYETQLSQKVELNKELFAPFYMGKISVFESPRSNYRSRSEFKIWHEGDEKINYA 71

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M        + ID     S  I ALM +++  I+   +   KLF +D+L+S S + +V+L
Sbjct: 72  MNRADKGGVILIDECPQVSSAIFALMPKLLRAIKRHKI-DFKLFGVDFLSSNSGEIVVSL 130

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YHR LD  ++E A  + D L      I +IGR+   K+ + +DYV E L V G    + 
Sbjct: 131 LYHRALDSTFKEIAEIISDEL-----DIYIIGRSRGQKVVIKQDYVTEILHVDGVEFKFN 185

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            IENSFTQPNA +N  M+ W L     +  DLLELYCG GNF++  A  + ++LA EI+K
Sbjct: 186 YIENSFTQPNAKVNEQMIGWALRELPNMDADLLELYCGAGNFTIPFASKYRKILATEISK 245

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S+ AA+ N++ N V N+  VRM  +EF +A+   R FNR+K+IDI SY  KTIFVDPPR
Sbjct: 246 SSINAAKSNMSLNKVKNISFVRMGVEEFVEALDGVRIFNRMKEIDIDSYEIKTIFVDPPR 305

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           SG+D+AT      Y +I+YISCNP +L RDL +L+ TH +  +ALFDQFPYT H E G  
Sbjct: 306 SGMDEATCRFASRYENIIYISCNPQTLLRDLELLTKTHNVIDMALFDQFPYTHHAEMGAK 365

Query: 362 LVRK 365
           LV+K
Sbjct: 366 LVKK 369


>gi|145640957|ref|ZP_01796539.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021]
 gi|145274471|gb|EDK14335.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae 22.4-21]
          Length = 304

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 175/304 (57%), Positives = 227/304 (74%)

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           MFDQ T +R R+D F   S+LIN +M  ++  ++ + +L  KLFQIDYL++ S++ IV+L
Sbjct: 1   MFDQATLQRYRVDEFPIASMLINRMMQTLLPLLKQQEVLHKKLFQIDYLSTLSNKIIVSL 60

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YH+ L + W   A  L+D L  + + +Q+IGRA+K KIC ++DYVDE L V GR  +YR
Sbjct: 61  LYHKTLTEEWESAAKNLKDLLEKQGFNVQIIGRASKQKICFEQDYVDEVLPVNGRNYVYR 120

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q+ENSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS+ LA++F +VLA EIAK
Sbjct: 121 QVENSFTQPNAMVNCKMLEWAIDCTQNSEGDLLELYCGNGNFSIALAQNFRKVLATEIAK 180

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           PSV AA++NIA N V+N++I+RMS++EFTQAM   R FNRLK ID+ SY   TIFVDPPR
Sbjct: 181 PSVAAAQFNIAENKVDNLQIIRMSAEEFTQAMNGVRAFNRLKGIDLKSYECNTIFVDPPR 240

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GLD  TV +VQ Y  ILYISCNP +LC +L  LS TH IE+ ALFDQFPYT HME G+ 
Sbjct: 241 AGLDPDTVKLVQNYDRILYISCNPHTLCDNLVELSKTHRIEKAALFDQFPYTDHMESGLW 300

Query: 362 LVRK 365
           L+RK
Sbjct: 301 LIRK 304


>gi|268679645|ref|YP_003304076.1| tRNA (uracil-5-)-methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617676|gb|ACZ12041.1| tRNA (uracil-5-)-methyltransferase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 367

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 145/363 (39%), Positives = 219/363 (60%), Gaps = 7/363 (1%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S TL    Y+ Q+A K   ++ +     V     F S   HYR RAEF IW +G+ +++ 
Sbjct: 11  SCTLYALDYQAQVAHKKTAIKTLFEPLHVKEFTFFESACEHYRGRAEFRIWKEGEKIHYA 70

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M     K  + ID        I+ LM +++  I    +LR ++F I++L+S S+  +VTL
Sbjct: 71  MGAMDKKRAVCIDACPKVEERIDTLMPKLLKAIEGVDVLRERIFAIEFLSS-SEHLLVTL 129

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           IYH+ LD AW + A +L        + I +IGR+   K  L +D+++ER  +  ++  Y 
Sbjct: 130 IYHKPLDKAWEKEAKKL-----EEVFNIFVIGRSRGIKKVLSQDFIEERFALEAKSYRYH 184

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            IE  F+QPN  +N  M+ WVL+  +  + DLLELYCG GNF+L +A  F++VLA EI+K
Sbjct: 185 IIEGGFSQPNRTMNQTMIGWVLSHLESCE-DLLELYCGYGNFTLPMAGKFNKVLATEISK 243

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S+ +A  N   N V+N+  +R+S++E T A+ +ER FNRL  +++  Y F  +FVDPPR
Sbjct: 244 TSIASALKNCELNDVSNITFLRLSAEELTSALNKERTFNRLAGMNLDDYAFSHVFVDPPR 303

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           SG+D+ ++  +  + +I+YISCNP +L RDL +L   +TIE  ALFDQFP T H+E GV+
Sbjct: 304 SGMDEKSLAFISRFENIIYISCNPQTLKRDLEVLCQNYTIEHFALFDQFPNTEHLESGVI 363

Query: 362 LVR 364
           L R
Sbjct: 364 LKR 366


>gi|307109771|gb|EFN58008.1| hypothetical protein CHLNCDRAFT_20361 [Chlorella variabilis]
          Length = 461

 Score =  349 bits (896), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 161/372 (43%), Positives = 230/372 (61%), Gaps = 14/372 (3%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            +   QY+ QL  K  R+R +   F  P LQ FRS P HYRMRAEF +WH+GDDL++IM+
Sbjct: 42  AIDPSQYDSQLEAKEQRIRNLFAEFNPPPLQAFRSRPEHYRMRAEFRVWHEGDDLFYIMY 101

Query: 64  ---DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF---------QIDYLT 111
               +     +R+D F   S L+N LM  +   I+  P+LR KL          Q ++ T
Sbjct: 102 EKDGEGKNRDVRVDSFPVASELLNELMGLLRDHIKASPILRHKLGHQPRKVSLPQANFHT 161

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
           + S Q++V+LIYH+ L + W+E    +     +     Q+IGR+   K+C+D D V E L
Sbjct: 162 TLSGQSMVSLIYHKKLGEEWKEELRGVLAKAPSSTATPQIIGRSRGQKVCVDADEVQEVL 221

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH 230
           +V G+ L   Q+E SF+QPN G+  HML W  +AT G  G +LLELYCGNGNF++ LA +
Sbjct: 222 SVDGQQLKQVQVEASFSQPNGGMCQHMLSWARSATAGSTGGELLELYCGNGNFTVALAPN 281

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           F +  + +++K SV AA+ N   N V NV + RMSS+EFT A +  R+  RL+ +D+ S 
Sbjct: 282 FRKA-SSQVSKSSVAAAKRNFELNGVGNVFVARMSSEEFTAAWKEGRQMRRLEGLDLQSL 340

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
            F T+ VDPPR+GLD  TV +++ +  ++YISCNPD+L  +L+ +     I+R A+FDQF
Sbjct: 341 SFTTLLVDPPRAGLDSQTVQLLKDFQSVVYISCNPDTLHANLAEVRDLFEIKRFAMFDQF 400

Query: 351 PYTRHMECGVLL 362
           PYT H+ECGV L
Sbjct: 401 PYTHHVECGVYL 412


>gi|157738407|ref|YP_001491091.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri RM4018]
 gi|172045655|sp|A8EWU8|TRMA_ARCB4 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157700261|gb|ABV68421.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri RM4018]
          Length = 375

 Score =  348 bits (893), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 148/368 (40%), Positives = 228/368 (61%), Gaps = 11/368 (2%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY-- 59
           S TL    YE+QL  K+ R ++    F   +  I +S   ++R RAEF IW +  +    
Sbjct: 11  SCTLFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKE 70

Query: 60  ---HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
              + M D + K  ++I+     S  I  LM +++  ++ +  L  KLF +++L S +  
Sbjct: 71  ILSYAMNDFK-KNILKINSCEMVSFHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKD 129

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +VTLIYH+ L+++W + A  +   L+     I++IGR+ K ++ L  DY++E L ++ +
Sbjct: 130 MLVTLIYHKKLEESWIQKAKEIEKKLN-----IKIIGRSKKQRLVLTNDYINETLNISNQ 184

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
              +   EN FTQPN  +NV M+EWVL  TK    DL ELYCG GNF++ L+  F +VLA
Sbjct: 185 NFFFAYEENGFTQPNTNVNVQMIEWVLENTKNSSKDLCELYCGGGNFTIPLSTKFRKVLA 244

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            EI+K S+++A  N + N + ++  +RMS+++F QA+ + R FNRLKDI++  Y F TIF
Sbjct: 245 TEISKTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIF 304

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           +DPPRSGLDD T  + + + +I+YISCNP++L RDL  L+ TH IE+ ALFDQF +T H+
Sbjct: 305 MDPPRSGLDDTTRNLAKDFENIIYISCNPETLHRDLEELTKTHEIEKFALFDQFAFTNHI 364

Query: 357 ECGVLLVR 364
           E GV+L +
Sbjct: 365 ESGVILRK 372


>gi|315636702|ref|ZP_07891932.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri JV22]
 gi|315479017|gb|EFU69720.1| tRNA (uracil-5-)-methyltransferase [Arcobacter butzleri JV22]
          Length = 375

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 147/368 (39%), Positives = 228/368 (61%), Gaps = 11/368 (2%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY-- 59
           S TL    YE+QL  K+ R ++    F   +  I +S   ++R RAEF IW +  +    
Sbjct: 11  SCTLFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKE 70

Query: 60  ---HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
              + M D + K  ++I+     S  I  LM +++  ++ +  L  KLF +++L S +  
Sbjct: 71  ILSYAMNDFK-KNILKINSCEMVSHHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKD 129

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +VTLIYH+ L+++W + A  +   L+     I++IGR+ K ++ L  DY++E L ++ +
Sbjct: 130 MLVTLIYHKKLEESWIQKAKEIEKRLN-----IKIIGRSKKQRLVLTNDYINETLNISNQ 184

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
              +   EN FTQPN  +NV M+EWVL  TK    DL ELYCG GNF++ L+  F +VLA
Sbjct: 185 NFFFAYEENGFTQPNTNVNVQMIEWVLKNTKNSSKDLCELYCGGGNFTIPLSTKFRKVLA 244

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            EI+K S+++A  N + N + ++  +RMS+++F QA+ + R FNRLKDI++  Y F TIF
Sbjct: 245 TEISKTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIF 304

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           +DPPRSGLD+ T  + + + +I+YISCNP++L RDL  L+ TH IE+ ALFDQF +T H+
Sbjct: 305 MDPPRSGLDNTTRNLAKDFENIIYISCNPETLHRDLEELTKTHKIEKFALFDQFAFTNHI 364

Query: 357 ECGVLLVR 364
           E GV+L +
Sbjct: 365 ESGVILRK 372


>gi|297518619|ref|ZP_06937005.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli OP50]
          Length = 286

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 186/281 (66%), Positives = 223/281 (79%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPN  +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNTAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ I
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286


>gi|254514426|ref|ZP_05126487.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR5-3]
 gi|219676669|gb|EED33034.1| tRNA (uracil-5-)-methyltransferase [gamma proteobacterium NOR5-3]
          Length = 366

 Score =  342 bits (878), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 159/361 (44%), Positives = 224/361 (62%), Gaps = 8/361 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + YEQ  A+K  R+ + M    +P  Q F S    YR+RAEF IWHD DDL ++MFD +
Sbjct: 10  PENYEQLFAQKCARVEKDMQFGSLPPAQRFSSPSQSYRVRAEFRIWHDEDDLNYVMFDPE 69

Query: 67  T-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + +  + I  F+P    I  LM  +   ++L P LR KLFQ +++ + + + +VTLIYHR
Sbjct: 70  SPRTPVIIREFVPALEPIRQLMPRLREYLKLRPTLRRKLFQAEFMATTTGELLVTLIYHR 129

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDDAW E A  L +A     + + L+GR+ K K  +  D+V +   V GR   YRQ E 
Sbjct: 130 ALDDAWEEEATTLAEA-----FGVSLVGRSRKQKRVIGHDFVTDEFVVNGRIYSYRQYEQ 184

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF QPNA +N  ML W    +    GDLLELYCGNGNF+L LA  F +V+A E++K    
Sbjct: 185 SFVQPNAPVNQKMLNWAWEQSAHCGGDLLELYCGNGNFTLPLASQFPQVIATELSKSGTR 244

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSG 303
           AA  N++ANH+ NV++VR+S++E +QAM   REF RL  +   +  Y  +T+FVDPPR+G
Sbjct: 245 AALENLSANHIENVEVVRLSAEEVSQAMAGVREFRRLASLPKALGDYDLRTVFVDPPRAG 304

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LD AT+  V+ +  I+Y+SCN  +L  ++  L +TH++   ALFDQFPYT H+E  V+L 
Sbjct: 305 LDPATLDCVRQFEAIIYVSCNLQTLKANIHALESTHSVASFALFDQFPYTHHIESAVVLR 364

Query: 364 R 364
           R
Sbjct: 365 R 365


>gi|157165225|ref|YP_001466961.1| tRNA (uracil-5-)-methyltransferase [Campylobacter concisus 13826]
 gi|226705971|sp|A7ZDV3|TRMA_CAMC1 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|112800933|gb|EAT98277.1| tRNA (uracil-5-)-methyltransferase [Campylobacter concisus 13826]
          Length = 367

 Score =  342 bits (877), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 133/364 (36%), Positives = 204/364 (56%), Gaps = 8/364 (2%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S TL    Y +Q++ K D ++Q    F      +F S P HYR RAEF IWH+G  L + 
Sbjct: 11  SCTLFTS-YSEQISFKTDLIKQNFSHFYDGKFDLFSSSPKHYRTRAEFGIWHEGSKLSYT 69

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M   +  +++ ID        I+ LM  ++ +++ + +LR KLF ++++  +S   +VTL
Sbjct: 70  MHASEKGKKVFIDECPKVCEQISHLMPRLLESLQDDEILRTKLFGVEFIACKSG-TLVTL 128

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YH+ LD  +      L     A K  + ++ R+   K+      + + L V G+   + 
Sbjct: 129 LYHKKLDSEFEAAMKIL-----ASKLDVMILARSRGQKLLSGELNLVDELNVDGQIYKFS 183

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             EN+F QPN  +N  M+ W          DLLELYCG+GNF++ L+  F  VLA EI+K
Sbjct: 184 LSENAFIQPNKAVNEKMIAWAKE-CVQSGADLLELYCGHGNFTIPLSFKFKNVLATEISK 242

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S+  A  N   N V N+K +RM + E   A    REFNRLKDI +  + F  + VDPPR
Sbjct: 243 SSIANALKNCELNGVENIKFLRMDADELMSAFAGVREFNRLKDIKLSDFNFSHVLVDPPR 302

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GL ++ +  ++ + +I+YISCNP++L  +L+ L+ +H + + ALFDQF  T H+ECGVL
Sbjct: 303 AGLSESVINFIRNFKNIIYISCNPETLKENLNELTKSHKVIKFALFDQFANTHHIECGVL 362

Query: 362 LVRK 365
           L  K
Sbjct: 363 LEAK 366


>gi|226326751|ref|ZP_03802269.1| hypothetical protein PROPEN_00611 [Proteus penneri ATCC 35198]
 gi|225204588|gb|EEG86942.1| hypothetical protein PROPEN_00611 [Proteus penneri ATCC 35198]
          Length = 292

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 170/288 (59%), Positives = 219/288 (76%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           M  +L    Y+ QL EK  RL+ MM  F  P  ++F S   HYRMRAEF IWH+ D LYH
Sbjct: 1   MQNSLPTQTYQSQLNEKTQRLQTMMAPFNAPEAEVFSSPEQHYRMRAEFRIWHEDDSLYH 60

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           IMFDQ+TK+R+R+D F   S LIN +M+ ++A I+ +P LR KLFQIDYL++ S++ IV+
Sbjct: 61  IMFDQETKQRIRVDQFPVASQLINKMMVVLLAEIKDKPTLRKKLFQIDYLSTLSNKIIVS 120

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ +D+ W++ A  LR  L A+ + +QLIGRA KTKI LD D++DE L VAG+ +IY
Sbjct: 121 LLYHKKIDETWQQEAQALRQILIAQGFDVQLIGRAYKTKIMLDNDFIDEVLPVAGKEMIY 180

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           RQ+ENSFTQPNA +N+ MLEW L AT+  +GDLLELYCGNGNFSL LAR+FDRVLA EIA
Sbjct: 181 RQVENSFTQPNAQVNIKMLEWALKATENAKGDLLELYCGNGNFSLALARNFDRVLATEIA 240

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           KPSV AA+YNIA NH++NVKI+RMS+++FTQAM   REF RL+ ID+ 
Sbjct: 241 KPSVYAAQYNIAMNHIDNVKIIRMSAEDFTQAMNGVREFKRLEGIDLK 288


>gi|126641572|ref|YP_001084556.1| tRNA (uracil-5-)-methyltransferase [Acinetobacter baumannii ATCC
           17978]
          Length = 322

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 154/326 (47%), Positives = 221/326 (67%), Gaps = 11/326 (3%)

Query: 45  MRAEFHIWHDGDDLYHIMF----DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           MRAEF IWH  +D+++ MF    D + K  +RID F      IN LM  ++A ++   LL
Sbjct: 1   MRAEFRIWHTENDMFYAMFERNDDGKQKTVVRIDEFPIADKSINDLMPLLLAELKANSLL 60

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
             +LF++D+L + S + +VTLIYHR L+  W + A  L + L+     I+++GR+   KI
Sbjct: 61  SQRLFEVDFLATLSGEMLVTLIYHRKLNQEWEQAAKALAEKLN-----IKIMGRSRGQKI 115

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
            +  D+V E   +  R+  Y+QIE+SFTQPNA +   ML+W   A +G +  LLELYCGN
Sbjct: 116 VIGDDFVVEEFELLNRSFKYKQIESSFTQPNAQVCKKMLQWACDAAEGSKKHLLELYCGN 175

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNF+L L+  F+RVLA E+AK SV AA++NI  N ++N+++ R+S++EFTQA + EREF 
Sbjct: 176 GNFTLPLSLKFERVLATELAKSSVYAAQWNIEQNQIDNIQVARLSAEEFTQAYQGEREFR 235

Query: 281 RLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT 338
           RL++  IDI SY F T+FVDPPR+G+DD T+ ++Q +  I+YISCNPD+L  +L  L+ T
Sbjct: 236 RLQEAYIDIQSYDFGTVFVDPPRAGIDDETLKLLQGFERIIYISCNPDTLYENLKTLTQT 295

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           H + + ALFDQFPYT H+E GVLL +
Sbjct: 296 HRVTKFALFDQFPYTHHVESGVLLEK 321


>gi|224373183|ref|YP_002607555.1| tRNA (uracil-5-)-methyltransferase [Nautilia profundicola AmH]
 gi|262827704|sp|B9LA97|TRMA_NAUPA RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|223589187|gb|ACM92923.1| tRNA (uracil-5-)-methyltransferase [Nautilia profundicola AmH]
          Length = 365

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 131/365 (35%), Positives = 213/365 (58%), Gaps = 13/365 (3%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S  L    Y++QL  K ++L++M   F +P +++      H+R RAEF +WH+GD  Y+ 
Sbjct: 11  SCVLWEMPYDEQLKMKSEKLKEMFSEFDMPEIEVVHGSDEHFRARAEFRVWHEGDKSYYA 70

Query: 62  MFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           M  ++   +  + I+        I  +M  ++  I     LR KL++ID+L++   + I+
Sbjct: 71  MRKRKEDGRGVIPIEECKIVDKAIYDIMTPLLKEIEKNDNLRFKLYEIDFLSNSKGELII 130

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TLIYH+ +D++  E   +L++      + ++        K   D++Y+ E L +  +T  
Sbjct: 131 TLIYHKKVDESIAEDIKKLKEKFKNADFIVR----KKGRKYVFDKNYLIEELNINSKTYK 186

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Y+ IEN+F+QPN  +N  M+EW +  ++ ++GDL+ELYCGNGNF++ L+  F++V+A EI
Sbjct: 187 YKIIENTFSQPNRQMNQKMIEWAMRNSEDLKGDLVELYCGNGNFTIPLSERFNKVIATEI 246

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K S+EAA YN   N  +N+  + MS+ EF++  +            I  Y  K I +DP
Sbjct: 247 SKESIEAATYNAEINARDNITFLAMSAAEFSKLYKDRSPL-------ITKYDLKNILIDP 299

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GLDD +   V  + +I+YISCNP++L RDL  L+    I+  A FDQFPYT H ECG
Sbjct: 300 PRAGLDDKSREFVNEFDNIIYISCNPETLQRDLKTLAKGREIKAFAFFDQFPYTNHAECG 359

Query: 360 VLLVR 364
           V+L +
Sbjct: 360 VILKK 364


>gi|255075201|ref|XP_002501275.1| predicted protein [Micromonas sp. RCC299]
 gi|226516539|gb|ACO62533.1| predicted protein [Micromonas sp. RCC299]
          Length = 459

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 154/394 (39%), Positives = 217/394 (55%), Gaps = 40/394 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMM------------------LAFQVPNLQIFRSEPIHYRMRAE 48
            D Y ++L  K++R R                         +P  ++  S   ++RMRAE
Sbjct: 69  PDTYREELDVKIERARSHFAAAPAPAPTPEVPHPKPLEEIHLPPTEVHESARSNFRMRAE 128

Query: 49  FHIWHDGDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107
           F +WHDGD  Y  MFD    K  + +  F  GS  IN LM   +  I    ++R KLFQ+
Sbjct: 129 FRVWHDGDRSYLAMFDSDDPKTPIEVPSFPMGSEKINELMPAFIEEIGRSEVIRRKLFQV 188

Query: 108 DYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           ++LT+    A+++++YH+ +  D W   A ++R  L      + +IGR+ K K+ L  DY
Sbjct: 189 NFLTTMKGDALISMLYHKPVKTDEWELEAEKMRQRL-----GVSIIGRSRKQKVVLGNDY 243

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--------------LAATKGIQGD 212
           V E + V GR L Y+Q+E  FTQPNAGI+  MLEW                AA      D
Sbjct: 244 VMEEIEVDGRVLTYKQLEGGFTQPNAGISAKMLEWARSAAVSDSADAVGEAAAPARRNDD 303

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LLELYCGNGNF++ +A  F  VLA E++K SV AA+ N  AN   NV   R+SS+E T A
Sbjct: 304 LLELYCGNGNFTIAMAPMFRAVLATEVSKVSVAAAKLNADANGAGNVAFARLSSEELTLA 363

Query: 273 MRREREFNRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
           + + ++F RL D+  + SY  +T+ VDPPR+G+ +     V  +  I+YISCNP++L  D
Sbjct: 364 LDQGKQFARLDDVPPLESYDLRTVLVDPPRAGMGEEVSTFVSRFDRIVYISCNPETLAAD 423

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  L  TH + R A FDQFPYT H+ECG LL+ K
Sbjct: 424 VRTLRDTHEVARFAAFDQFPYTPHLECGALLIAK 457


>gi|34558377|ref|NP_908192.1| tRNA (uracil-5-)-methyltransferase [Wolinella succinogenes DSM
           1740]
 gi|81653300|sp|Q7M7T6|TRMA_WOLSU RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|34484096|emb|CAE11092.1| TRNA (URACIL-5-)-METHYLTRANSFERASE [Wolinella succinogenes]
          Length = 370

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 137/365 (37%), Positives = 213/365 (58%), Gaps = 6/365 (1%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYH 60
            G  L   YE+Q   K    R+++   +     ++ S P  +R RAEF ++  +   L +
Sbjct: 10  GGCALALPYEEQWKLKESEFRELLPLSKDTPTDLYPSAPHSFRARAEFRLYRNESGRLSY 69

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
            M  + +K+ + I         I ALM  ++  +  + +L  KLF +++L+  S + +V+
Sbjct: 70  AMSQKGSKQPLPIQSCPILLPSIQALMPSLLEALESDEILTQKLFGVEFLSGLSQEVLVS 129

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L+YH+ LD AW E   R    L +      LIGR+   KI L   ++ E LT+  +   +
Sbjct: 130 LLYHKRLDHAWEE---RALGLLSSLPTLSSLIGRSKGQKIVLGESFITETLTIDSKPWRF 186

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
              E SFTQPN  +N  M+EW+++A    QGDLLELYCG GNF+L L+  + ++LA E++
Sbjct: 187 LHYEGSFTQPNPKVNEKMIEWIISA--PPQGDLLELYCGAGNFTLPLSSRYAKILATEVS 244

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           K S+ AA+ N   N V ++  VR++++E   A+  EREF RL+++D+ SY F+ +FVDPP
Sbjct: 245 KTSIHAAKQNCELNSVRHISFVRLNAQETQSALEGEREFYRLRELDLPSYDFQAVFVDPP 304

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           R+GL       ++ +  ILYISCNP +L  DL +L  +H +ER ALFDQFPYT H+E GV
Sbjct: 305 RAGLGAEVASFLRRFDQILYISCNPKTLQSDLEVLQLSHDVERFALFDQFPYTPHLESGV 364

Query: 361 LLVRK 365
           +L ++
Sbjct: 365 ILRQR 369


>gi|327483052|gb|AEA77459.1| tRNA (Uracil54-C5-)-methyltransferase [Vibrio cholerae LMA3894-4]
          Length = 282

 Score =  325 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 161/282 (57%), Positives = 209/282 (74%), Gaps = 2/282 (0%)

Query: 87  MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146
           M  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR L + W   A  L+  L+   
Sbjct: 1   MPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQLSEEWITAAQALKQRLNDEG 60

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
           + + LIGRA K K+ LDRDYV E+L V G+  +Y+Q+EN FTQPNA +   MLEW +  T
Sbjct: 61  FNLNLIGRARKMKVVLDRDYVVEKLQVNGQPYVYKQVENCFTQPNAKVAEKMLEWAVDCT 120

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +  +GDLLELYCGNGNFSL LA++F+RVLA E+AKPSVEAA++NIAAN + NV+I+RMS+
Sbjct: 121 QESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAAQFNIAANQIGNVQIIRMSA 180

Query: 267 KEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
           +EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  T  MVQ Y  ILYISCN
Sbjct: 181 EEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYISCN 240

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           P++L  +L +L  TH + R ALFDQFPYT HME GV+L RK 
Sbjct: 241 PETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERKK 282


>gi|161870527|ref|YP_001599699.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis 053442]
 gi|161596080|gb|ABX73740.1| tRNA (uracil-5-)-methyltransferase [Neisseria meningitidis 053442]
          Length = 316

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 150/318 (47%), Positives = 210/318 (66%), Gaps = 11/318 (3%)

Query: 58  LYHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           +++ MF++  K      +R D F   S  +N LM E++A       LR + + +++L++ 
Sbjct: 1   MFYAMFEKGQKAGGASLIRCDRFEAASEAVNRLMPELIAVAAQSAELRNRWYAVEFLSTL 60

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           S + +VT+IYH+ LD+ W + A         ++  I +IGR+   KI L +DYV E L V
Sbjct: 61  SGEMLVTMIYHKRLDNEWMQAAQA-----LQQQLDISVIGRSRGQKIVLKQDYVTETLKV 115

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
             R   YRQIE SFTQPNA +   MLEW   A +G+ GDLLELYCGNGNF+L L+  F+R
Sbjct: 116 GNRDFRYRQIEGSFTQPNAAVCQKMLEWACGAAEGLDGDLLELYCGNGNFTLPLSEKFER 175

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYR 291
           VLA EI+K SV AA++NI AN + N+KI R+S++EFT+A   +REF RLKD  I +  Y 
Sbjct: 176 VLATEISKTSVSAAQWNIEANRIGNIKIARLSAEEFTEAYTGKREFKRLKDGGIALTDYA 235

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
           F TIFVDPPR+G+D+ T+ +V  + +I+YISCNP++L  +L  L+ THT+ER ALFDQFP
Sbjct: 236 FSTIFVDPPRAGIDEETLKLVSQFDNIIYISCNPETLRTNLDTLAETHTVERAALFDQFP 295

Query: 352 YTRHMECGVLLVRKPSGW 369
           +T H+E GVLL +K  G 
Sbjct: 296 FTHHIESGVLLKKKILGK 313


>gi|255322717|ref|ZP_05363861.1| tRNA (uracil-5-)-methyltransferase [Campylobacter showae RM3277]
 gi|255300278|gb|EET79551.1| tRNA (uracil-5-)-methyltransferase [Campylobacter showae RM3277]
          Length = 377

 Score =  322 bits (825), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 138/370 (37%), Positives = 207/370 (55%), Gaps = 9/370 (2%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD----GDD 57
               L   YE+Q+  K D +R+    F     + F S+   YR RAEF IWHD      D
Sbjct: 13  GSCTLDMPYEEQVKFKTDFIRREFEPFYSGEFEFFASQSAAYRTRAEFGIWHDIWHSAVD 72

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           L + M   +TK R+ ID     +  I  LM  ++  +    +L+ +LF  ++++  S   
Sbjct: 73  LAYTMHGAKTK-RIMIDECPKVAAPIANLMPRLLEALAKNQILKERLFGAEFISCASG-I 130

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           + TL+YH+ L +A +     L  AL     ++ +  RA   K+      + + L + G+ 
Sbjct: 131 LATLLYHKRLGEAEQSEIESL--ALKFADLRVTIAARAKGQKLLSGELNLQDSLNIGGKI 188

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
             +   + +F QPN  +N  M+ W          DLLELYCG+GNF++ ++  F RVLA 
Sbjct: 189 YKFTFGDGAFIQPNTAVNEKMIAWA-KRCVERGADLLELYCGHGNFTVPMSEKFKRVLAT 247

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI+K S+  A  N   N VNN++ +RMS++E   A RREREFNRL+++DI SY F  + V
Sbjct: 248 EISKSSIANALKNCELNGVNNIEFLRMSAEELMSAFRREREFNRLRELDIFSYDFSHVLV 307

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DPPR+GLD++ +  ++ Y +I+YISC+P SL RDL+ L+ TH   + A+FDQF  T H+E
Sbjct: 308 DPPRAGLDESVINFIKNYENIIYISCSPQSLKRDLTQLAATHEAVKFAVFDQFANTTHIE 367

Query: 358 CGVLLVRKPS 367
           CGVLL  K +
Sbjct: 368 CGVLLKGKNA 377


>gi|223041073|ref|ZP_03611330.1| tRNA (uracil-5-)-methyltransferase [Campylobacter rectus RM3267]
 gi|222877686|gb|EEF12810.1| tRNA (uracil-5-)-methyltransferase [Campylobacter rectus RM3267]
          Length = 374

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 133/366 (36%), Positives = 201/366 (54%), Gaps = 5/366 (1%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
               L   YE+Q+  K   +R+    F     + F S+   YR RAEF IW +G++L + 
Sbjct: 13  GSCTLDAPYEEQVEFKKGFIRREFEPFYSGEFEFFASQKAGYRTRAEFGIWREGEELSYT 72

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M   + K R+ ID     +  I  LM  ++  +    +L+ KLF  ++++  S   + TL
Sbjct: 73  MHGAKAK-RVFIDECPKVAAPIANLMPRLLGALVKNQILKEKLFGAEFISCASG-ILATL 130

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YH+ L  A +     L        +++ +  RA   K+      + +RL +  +   + 
Sbjct: 131 LYHKHLGKAEQGEIESLAREF--VGHRVTIAARAKGQKLLSGELNLQDRLNIGDKIYKFT 188

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             + +F QPN  +N  M+ W          DLLELYCG+GNF++ +A  F RVLA EI+K
Sbjct: 189 FGDGAFIQPNTAVNEKMIAWA-KGCVERGADLLELYCGHGNFTVAMAEKFKRVLATEISK 247

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S+  A  N   N VNN+K +RMS++E   A  REREFNRL+++DI SY F  + VDPPR
Sbjct: 248 SSIANALKNCELNGVNNIKFLRMSAEELISAFGREREFNRLRELDIFSYDFSHVLVDPPR 307

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +GLD + +  ++ Y +I+YISC+P SL RD++ L  TH   + A+FDQF  T H+ECGVL
Sbjct: 308 AGLDASVINFIKNYENIVYISCSPQSLKRDMAQLDATHEAVKFAVFDQFANTAHIECGVL 367

Query: 362 LVRKPS 367
           L  K +
Sbjct: 368 LRSKNA 373


>gi|150391752|ref|YP_001321801.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149951614|gb|ABR50142.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens
           QYMF]
          Length = 452

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 160/386 (41%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              ++   Y+ QL  K  R+ + +         +        P  YR +A+F I      
Sbjct: 80  GCQIMHMDYKGQLEMKRKRVEETLARIGKIETTVHATLGMDNPYEYRNKAQFPIGVMDGK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                + + + E +  +Y    S +           I++  + +    +   LLR  + +
Sbjct: 140 AILGFYKKGSHEIVDTEYCHIQSPINETIAKVMKHYIDSFGVTVYDEKKRVGLLRHVITK 199

Query: 107 IDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           + + T +    ++T    L + + L D   E    L+   H    +   +   +KTK   
Sbjct: 200 VGFTTGEVMVVLITNGKQLPHKKELIDLLIEGVKGLKTVAHNINEKNTNVIFGSKTKTLH 259

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
              Y+ + +      L +     SF Q N      + E  L  A    + ++L++YCG G
Sbjct: 260 GEGYITDYIG----DLKFNISPQSFFQVNPMQTKALYEKALEYANLTGEENVLDIYCGIG 315

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA+   +V  VE+ + ++E A++N   N++NN +     ++E    + +E     
Sbjct: 316 TISLFLAQKAKKVYGVEVVEAAIEDAKHNAKINNLNNAEFHVGKAEEVVPQLYKE----- 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338
                    R + + VDPPR G +++ +  +       ++Y+SCNP +L RDL+ L    
Sbjct: 371 -------GIRTEVVVVDPPRKGCEESVLETIVNMEPKRVVYVSCNPATLARDLAYLEEHG 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +  + +   D FP++ H+E  VL+ R
Sbjct: 424 YKTQEVQPVDMFPHSSHVETVVLMSR 449


>gi|213051818|ref|ZP_03344696.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 262

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 168/257 (65%), Positives = 201/257 (78%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKI 261
            AA+YNIAANH++NV+I
Sbjct: 246 AAAQYNIAANHIDNVQI 262


>gi|242310595|ref|ZP_04809750.1| tRNA (uracil-5-)-methyltransferase [Helicobacter pullorum MIT
           98-5489]
 gi|239522993|gb|EEQ62859.1| tRNA (uracil-5-)-methyltransferase [Helicobacter pullorum MIT
           98-5489]
          Length = 369

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 133/365 (36%), Positives = 214/365 (58%), Gaps = 9/365 (2%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
            G   +++Y   L  K+ R   M+      N ++F S+ + +R R E  I+H  + + + 
Sbjct: 10  GGCSALEEYS--LESKIARASAML---GFQNFEVFGSQEVSFRARCELGIYHKENKIIYT 64

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE--PLLRAKLFQIDYLTSQSDQAIV 119
           M  ++ ++ + I         + A +  +   +  +     R KLF I+ L++Q D  ++
Sbjct: 65  M--RKGRQFVPIQNCPILVDNLQAFLQVLKEVLNDDFFGDFREKLFAIEALSTQMDTILL 122

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TLIYH+ L+D W E A   ++ L  R  +++++GR+   KI +D+D+V E L V  +   
Sbjct: 123 TLIYHKKLNDKWLEIARVFKEVLEKRGIKLEVVGRSRGVKIVVDKDFVIEELKVGKKGYF 182

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YR  E +F+QPN  +N  ML+W + + K    DLLE+YCG GNF++  +  F +VLA EI
Sbjct: 183 YRYDEGAFSQPNPKVNEKMLKWAMDSLKRSDEDLLEMYCGCGNFTIPFSEKFRKVLATEI 242

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K S+ AA++    N  NN+K VR++++E  +A+   REF RL+ I +  Y F ++FVDP
Sbjct: 243 SKTSIRAAKFACEKNQRNNIKFVRLNAQECIEALEGVREFRRLEGIRLQDYCFSSVFVDP 302

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GL +     +Q + +ILYISCNP +L +DL IL  TH I ++A FDQFP+T H+E G
Sbjct: 303 PRAGLGEEVSRFLQRFQNILYISCNPSTLAKDLEILKQTHKISKVAFFDQFPHTPHLESG 362

Query: 360 VLLVR 364
           VLL +
Sbjct: 363 VLLHK 367


>gi|323144069|ref|ZP_08078712.1| tRNA (uracil-5-)-methyltransferase [Succinatimonas hippei YIT
           12066]
 gi|322416145|gb|EFY06836.1| tRNA (uracil-5-)-methyltransferase [Succinatimonas hippei YIT
           12066]
          Length = 378

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 155/371 (41%), Positives = 225/371 (60%), Gaps = 9/371 (2%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYH 60
           T     Y+  L EK D +  ++      +P  QIF S P +YRMRAEF I+H +     +
Sbjct: 8   TTDPHNYQNYLNEKTDHVLNLLKAKGITLPPPQIFPSIPSNYRMRAEFAIFHTETTGFEY 67

Query: 61  IMFDQ--QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
            M+D+    K+R+ I+YF   SL IN  M  +      +  ++ +LF+ D+L +     I
Sbjct: 68  CMYDKEGGKKKRVFINYFDGVSLAINKAMSLLKEYALTDLQIKNRLFEADFLCNLQGDVI 127

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +TL YH+ LD+A+     +LR  LH +    +++ RA K KI    D + E L V G+ +
Sbjct: 128 ITLNYHKKLDEAFAASLEKLRSFLHEKSLNAEIVARARKQKITCKDDTLLECLKVNGKNV 187

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAV 237
              QIE +FTQPNA     MLE+ L  ++ +Q  DLLELYCG+G F+  LA  + +VLA 
Sbjct: 188 YLYQIEGTFTQPNAVTCEKMLEFALNCSEDMQNTDLLELYCGSGTFTATLAPCYRKVLAT 247

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTI 295
           E+A+   + A  N+  N+++NVK+VR+S+ E TQA+ RER FNRL  KD+D++ Y FKT+
Sbjct: 248 EVARVPTQNALRNLEKNNIDNVKLVRLSAVEVTQALNRERTFNRLQQKDVDLNEYDFKTL 307

Query: 296 FVDPPRSGL-DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
            +DPPR+GL D+A +     +  ++YISC P+S   DL  L+ TH IE+LA FDQFPYTR
Sbjct: 308 LIDPPRAGLQDEAALKFTARFDRVIYISCGPESFASDLQFLTKTHRIEKLAFFDQFPYTR 367

Query: 355 HMECGVLLVRK 365
           H+E G LLVR+
Sbjct: 368 HLESGALLVRR 378


>gi|303286133|ref|XP_003062356.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455873|gb|EEH53175.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 469

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 151/408 (37%), Positives = 217/408 (53%), Gaps = 53/408 (12%)

Query: 7   IDQYEQQLAEKVDRLRQMM------------------LAFQVP---NLQIFRSEPIH-YR 44
            + Y  +L  K+   R                         VP    +++F S   H +R
Sbjct: 67  PETYRAELDVKIADARACFDASPERDDGAGGGKPIEAAKIAVPLPDEIEVFESPKKHHFR 126

Query: 45  MRAEFHIWHDGDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           MRAEF +WH GD  +  MFD +  K  + I+ F  GS  IN+LM E++  I+ EP LR K
Sbjct: 127 MRAEFRVWHAGDKSFMAMFDNEDPKTPVEIETFPMGSERINSLMKEVLREIKDEPALRRK 186

Query: 104 LFQIDYLTSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--- 159
           LFQ+++LT+  +D A+V+++YHR LD AW   A   R  +     ++ +IGR+ K K   
Sbjct: 187 LFQVNFLTTSGTDDALVSMLYHRPLDAAWEAAAEEARQRM-----KVSVIGRSRKQKARL 241

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL---------------- 203
           I L   +V E LTV G    Y+Q+E  FTQPN+G    MLEW                  
Sbjct: 242 IVLGNPFVMETLTVDGEKFTYKQLEGGFTQPNSGTCEKMLEWARDVSVDDARAPGSGSGP 301

Query: 204 --AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A  +    D LELYCGNGNF++ LA  +  VLA E++K SV AA  N   N   N K+
Sbjct: 302 AGARPRRRDDDFLELYCGNGNFTVALAPLYLNVLATEMSKVSVAAAVENFETNGTTNAKV 361

Query: 262 VRMSSKEFTQAMRREREFNRLKDI---DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           VR+S++E    +   +++ R+ +    D+ +Y  +T+ VDPPR+G+ +        +  I
Sbjct: 362 VRLSAEELVLVLDSGKKYERMTNAGLDDLSAYDLRTLLVDPPRAGMGEEVSKFASRFDRI 421

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +YISCNP +L  D  IL+ TH I+R A+FDQFPYT H+E G LLV++ 
Sbjct: 422 IYISCNPKTLAEDCRILAETHEIKRFAVFDQFPYTPHLESGALLVKRK 469


>gi|88705120|ref|ZP_01102832.1| tRNA (Uracil-5-)-methyltransferase [Congregibacter litoralis KT71]
 gi|88700815|gb|EAQ97922.1| tRNA (Uracil-5-)-methyltransferase [Congregibacter litoralis KT71]
          Length = 373

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 153/355 (43%), Positives = 218/355 (61%), Gaps = 8/355 (2%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y    A+K   + + ML  ++P  + F S    YR+RAEF IWHDGDD+ ++MFD  
Sbjct: 8   PENYATLFAKKCSDVEKDMLTLRLPPAERFASPVESYRVRAEFRIWHDGDDIDYVMFDPG 67

Query: 67  T-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
             +  + I  F P    I  LM +++A ++  P+LR KLFQ +++ + + + ++TLIYHR
Sbjct: 68  HPRTPVVIKDFAPALAPIRTLMPQLLAFLKSRPVLRRKLFQAEFMATTTGELLLTLIYHR 127

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDDAW + A  L     AR++ + L+GR+ K K  + RD+V +  TV GR   YRQ E 
Sbjct: 128 PLDDAWEDEARAL-----AREFDVSLVGRSRKQKRIIGRDFVVDAFTVDGRCYRYRQYEQ 182

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF QPNA IN  ML W         GDLLELYCGNGNF+L LA  F  V+A E++K    
Sbjct: 183 SFVQPNAPINEAMLTWAWQQGASCPGDLLELYCGNGNFTLPLASRFPAVIATELSKSGTR 242

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSG 303
           AA  NI  N V+NV+++R+S++E ++AM   REF RL  +   +  Y  +T+FVDPPR+G
Sbjct: 243 AALENIRDNGVDNVQVIRLSAEEVSEAMSGVREFRRLATLPKPLGDYDLRTVFVDPPRAG 302

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           LD  T+  V+ +  ILY+SCNP +L  ++  L+ +H +   ALFDQFPYT H+E 
Sbjct: 303 LDPGTLDCVRDFEAILYVSCNPKTLKSNIEALTDSHVVTHYALFDQFPYTPHIES 357


>gi|154175098|ref|YP_001408132.1| tRNA (uracil-5-)-methyltransferase [Campylobacter curvus 525.92]
 gi|262827638|sp|A7GY40|TRMA_CAMC5 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|112803124|gb|EAU00468.1| tRNA (uracil-5-)-methyltransferase [Campylobacter curvus 525.92]
          Length = 364

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/366 (34%), Positives = 205/366 (56%), Gaps = 13/366 (3%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
               L   YE QL  K + +      F    L+IF S+P  YR RAEF IWH+ D++Y+ 
Sbjct: 10  GSCTLALPYEDQLNFKANFIADKFREFFDGELEIFSSKPQRYRSRAEFGIWHENDEIYYT 69

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M   ++K  ++I   +     I ALM  ++  +     L++K+F ++++++    A++ L
Sbjct: 70  MHGSRSKF-IKISECLKVDESIAALMPRLLEELGTSNELKSKIFGVEFISTSELCAVILL 128

Query: 122 IYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            + RL  L+ A+ E A RL          ++++ R+   KI  D   + +   + G    
Sbjct: 129 YHKRLEGLEAAFSELAKRL---------GVKIVARSRGQKISSDERELCDSFEINGLRYA 179

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
               +++F QPN  +N  M+ W + A +  + D+LE+YCG+GNF++ LA  F RVLA EI
Sbjct: 180 LNFGDSAFIQPNKCVNEKMISWAMNAVQNAE-DMLEMYCGHGNFTIPLAGKFRRVLATEI 238

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K S+  A  N   N + N+K +RMS++E   A   ER F RL+ +++  + F  + VDP
Sbjct: 239 SKSSIANALKNCERNGIGNIKFLRMSAEELMSAFSGERGFRRLEGVNLADFTFSHVLVDP 298

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR+GL+ + +  ++ Y +I+YISCNP +L  +L  LS TH   + A+FDQF  T H+ECG
Sbjct: 299 PRAGLEASVINFIKNYENIVYISCNPQTLYENLKELSLTHKATKFAMFDQFANTNHIECG 358

Query: 360 VLLVRK 365
           V+L ++
Sbjct: 359 VVLKKR 364


>gi|253827633|ref|ZP_04870518.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|253511039|gb|EES89698.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
          Length = 370

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 140/368 (38%), Positives = 217/368 (58%), Gaps = 11/368 (2%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
            G  +++  E  L  KVD  +Q++    +    I       +R R E  I+   D + + 
Sbjct: 10  GGCSILE--ECSLESKVDYAKQLL---GINQCDIVSLRQDSFRARCELGIFFKDDKINYA 64

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE--PLLRAKLFQIDYLTSQSDQAIV 119
           M  ++ K+ + I+        +   +  +   +  E     R KLF I+ L++Q+D+ ++
Sbjct: 65  M--RKGKQFVCIENCCNLLESLQKFLPVLKKKLNQEFFKDFRQKLFAIEVLSTQNDEILL 122

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TLIYH+ L++ W E A  L+ AL  +++++++IGR+   K+ +++DYV E+L + G+   
Sbjct: 123 TLIYHKKLNETWLENAKELKKAL--QEFRVEIIGRSKGVKLIVEKDYVVEKLEIDGKKYY 180

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           YR  E +FTQPN  IN  M+EWVL      +GDLLE+YCG GNF++ L++ F +VLA EI
Sbjct: 181 YRYDEGAFTQPNPKINEKMIEWVLQNISQSKGDLLEMYCGCGNFTIPLSQKFRKVLATEI 240

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K S+ AA++    N  NN+  VR+S +E  +A+   R+FNRL+ I++  Y F  I VDP
Sbjct: 241 SKVSIRAAKFACQRNGCNNITFVRLSGQECIEAIEGIRKFNRLEQINLEEYDFSMILVDP 300

Query: 300 PRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           PR GL +     +Q +  ILYISCNP SL +DL ILS TH I + A FDQFP+T H+E G
Sbjct: 301 PRGGLGEEVCRFLQNFSSILYISCNPLSLAKDLKILSQTHRIVKAAFFDQFPHTSHLETG 360

Query: 360 VLLVRKPS 367
           +LL +  S
Sbjct: 361 ILLQKVDS 368


>gi|15613250|ref|NP_241553.1| RNA methyltransferase [Bacillus halodurans C-125]
 gi|50401684|sp|Q9KF10|Y687_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0687
 gi|10173301|dbj|BAB04406.1| RNA methyltransferase [Bacillus halodurans C-125]
          Length = 458

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 144/389 (37%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K  +++ ++              I  +EP  YR +A+  +     
Sbjct: 86  GCQLQHMSYDAQLRYKQKQVQDVLERIGKITAVTVRPTIGMNEPWRYRNKAQVPVGEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L    + +++   + +D  M               L   L I      +    LR  + 
Sbjct: 146 GLIAGFYQERSHRIIDMDECMIQHEENDKVIRQVKELARELGIRGYDEEKHRGTLRHVVA 205

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +    T +    ++T    L + + L +   +    ++  +     +   +   +KTK+ 
Sbjct: 206 RYGKNTGEIMVVLITRGEELPHKKTLIERIHKAIPHVKSIVQNVNPKRTNVIFGDKTKVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 266 WGEEYIYDTIG----DIKFAISARSFYQVNPEQTKVLYDQALEFANLTGSETVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+    V  VEI   ++  A+ N   N   NV+     +++            
Sbjct: 322 GTISLFLAQQAKHVYGVEIVPEAISDAKRNARLNGFANVQFAVGDAEKVMPWWYA----- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-T 337
                     R   I VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 377 -------QGVRADVIVVDPPRKGCDEALLKTILNMKPDRVVYVSCNPATLARDLRVLEDG 429

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            +  + +   D FP+T H+E   +L  K 
Sbjct: 430 GYETKDVQPVDMFPWTTHIESVAVLELKN 458


>gi|118475420|ref|YP_892144.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp.
           fetus 82-40]
 gi|134035055|sp|A0RPL1|TRMA_CAMFF RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|118414646|gb|ABK83066.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 367

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 124/363 (34%), Positives = 210/363 (57%), Gaps = 9/363 (2%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
               L   Y +Q+  K + +++    F    +  FRS    +R RAEF ++HD + L + 
Sbjct: 13  GSCTLDMPYSEQIDFKKNFIKEHFKDFHNGEIIFFRSPISKFRSRAEFGLYHDDNSLSYT 72

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M        ++ID        I+ +M  ++  ++    L+AKLF ++++T++ D+ ++ L
Sbjct: 73  MRRADG-GYLKIDKCSIVDEKISVIMPVLLDLLKENQNLKAKLFGVEFITTR-DEILIIL 130

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +YH+      +E            K ++ LI R+   K+      ++E+L + G++  Y 
Sbjct: 131 LYHKDASTIIQELTW------LQSKLKVGLIARSKGKKLVFGSSSLNEKLFINGKSYHYV 184

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             + +F QPN  IN +M+ WVL  T   + DLLELYCG+GNF++ L+  F++VLA EI+K
Sbjct: 185 FGDAAFIQPNRNINENMISWVLDHTTDCK-DLLELYCGHGNFTIPLSFKFNKVLATEISK 243

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S+ +A  N   N V+N+K  R+S++E  +A   +R+F RL+DID+ SY F  I VDPPR
Sbjct: 244 ASINSALKNCELNGVDNIKFTRLSAEELMEAFLFKRDFRRLQDIDLRSYEFSHILVDPPR 303

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           +G D + +  ++ Y +I+YISCNP +L  +L +L  TH++++ A+FDQF +T H+EC V+
Sbjct: 304 AGCDKSVLDFIRNYENIIYISCNPLTLKENLKLLCKTHSVDKFAIFDQFVHTNHIECAVV 363

Query: 362 LVR 364
           L +
Sbjct: 364 LKK 366


>gi|213417764|ref|ZP_03350880.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 239

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 165/237 (69%), Positives = 196/237 (82%)

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +D+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+ENS
Sbjct: 1   MDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVENS 60

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPSV A
Sbjct: 61  FTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPSVAA 120

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGLD 
Sbjct: 121 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGLDS 180

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
            T  MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 181 ETEKMVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 237


>gi|256003527|ref|ZP_05428517.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
           2360]
 gi|281418309|ref|ZP_06249329.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20]
 gi|255992551|gb|EEU02643.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
           2360]
 gi|281409711|gb|EFB39969.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20]
 gi|316941405|gb|ADU75439.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
           1313]
          Length = 455

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 151/386 (39%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             +L    YE  L  K + +R+ +         V +  +   +P++YR +A++ I    D
Sbjct: 82  GCSLQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDTVGMEQPVNYRNKAQYPIGRYKD 141

Query: 57  DLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105
            +    + +++ E +                      I    I     I  E L+R  + 
Sbjct: 142 GIRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNNISTYDEITGEGLVRHIMT 201

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           ++ +   ++ + +V L+ +     + ++   RL   +   K  +  +       I  D +
Sbjct: 202 RVGF---KTGEVMVVLVINGRNIPSQKKLVDRLVKEIPEIKSVVLNVNTKRTNVILGDEN 258

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
              Y  + +T       +     SF Q N      +    L  A    +  + +LYCG G
Sbjct: 259 IVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDYAQLTGKETVFDLYCGIG 318

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL L++   R+  VE+ + +V+ A  N   N V N + +   +++    M        
Sbjct: 319 TISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPEMYE------ 372

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
                    R   + VDPPR G D+A +  +       I+Y+SCNP +L RDL  L    
Sbjct: 373 ------KGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKYLAEGG 426

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
             +  +   D FP+T H+EC VL+ R
Sbjct: 427 FEVREVQPVDMFPWTYHVECVVLMSR 452


>gi|153952276|ref|YP_001398252.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|166988116|sp|A7H422|TRMA_CAMJD RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|152939722|gb|ABS44463.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 357

 Score =  305 bits (782), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 134/352 (38%), Positives = 210/352 (59%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + ++ TL+YH+ ++D  + 
Sbjct: 72  EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTTKQELSL-TLLYHKNIED-IKS 129

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L + GR + Y    + F QPN  
Sbjct: 130 NLENLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGREIFYEFNNDCFIQPNTT 184

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV    +   + DLLELYCG GNF+L LA+ F +VLA EI+K S+  A  N  
Sbjct: 185 INEKMITWVCEILSIQKRMDLLELYCGYGNFTLALAQFFFKVLATEISKSSINFALKNCK 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVENFALFDQFVNTPHLECGVFLSK 356


>gi|56418877|ref|YP_146195.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56378719|dbj|BAD74627.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 457

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 146/384 (38%), Gaps = 40/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++++++           +  I    P  YR +A+  +     
Sbjct: 86  GCQLQHLSYEGQLKAKEKQVKEVLARIGKLDGVTVHPVIGMKNPWRYRNKAQVPVGEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L    + +++ E + +D  +               ++    I     +    +LR  + 
Sbjct: 146 GLVAGFYKERSHEIIDMDACLIQQEKNDDVVQAVKRIVERYGIPSYDELAHRGVLRHIVA 205

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161
           +    T +    +VT   H   +       +R    ++  +     +   +    KT++ 
Sbjct: 206 RYGAATGEVMVVLVTRTNHLPHEQEIVRSIVREIPDVKSIVQNVNPERTNVIFGAKTRVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +++ +R+      + +     SF Q N      + +  L  A    +  +++ YCG 
Sbjct: 266 WGSEFITDRIG----GIQFAISARSFYQVNPEQTKVLYDKALEYAELTGRETVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LAR    V  VEI   ++E A+ N   N + NV     ++++       E    
Sbjct: 322 GTISLFLARKAKHVYGVEIVPEAIEDAKRNAELNGIQNVTFEVGAAEDVIPRWYEE---- 377

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
                     R   + VDPPR G D A +  + A   P ++Y+SCNP +L RDL IL   
Sbjct: 378 --------GVRADCLVVDPPRKGCDAALLETIIAMKPPRVVYVSCNPATLARDLRILEDG 429

Query: 338 THTIERLALFDQFPYTRHMECGVL 361
            +    +   D FP+T H+EC   
Sbjct: 430 GYETIEVQPVDMFPHTAHVECVAK 453


>gi|51893956|ref|YP_076647.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
 gi|51857645|dbj|BAD41803.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 459

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 147/388 (37%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++   +           +  +  ++P  YR +A+F +     
Sbjct: 87  GCQLQHIAYEAQLGLKRQQVVDAVERLGRLSGVTVHPTLGMADPWGYRNKAQFPVGRRSG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIE-----------MMATIRLEPLLRAKLF 105
            +    F   +   + I+       L N +M E           +        +LR  L 
Sbjct: 147 RVIAGFFAPGSHRIVDIERCAIQHPLANRIMAEVKELAGRFGVPIYDERSHTGVLRHVLA 206

Query: 106 QIDYLTSQSDQAIVTLIYHRL-LDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKIC 161
           ++   T ++   +VT   H     D  RE   R+ +    +         +    ++++ 
Sbjct: 207 RVGRGTGEAMAVLVTNGPHLPRGKDIARELMTRIPELVSVVQNINPARTNVVLGRESRVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             RD + + +      L +     SF Q N      + +  L  A       +++LYCG 
Sbjct: 267 AGRDAITDYIG----DLQFSISPVSFFQVNPAQTEVLYDKALEYAGLTGSETVIDLYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LAR    V+ +E  + +V  AR N A N + NV+ +   +      +  E    
Sbjct: 323 GTISLFLARRCREVVGIEWVEEAVADARENAARNGIGNVRFIAGDAAVEMPRLAAE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337
                     R   I +DPPR G D   +  +   A   ++Y+SCNP SL RDL  L+  
Sbjct: 379 --------GVRADVIVLDPPRKGCDGPVLEAIAQVAPRRVVYVSCNPASLARDLGRLAEM 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +    +   D FP+T H+EC   + R+
Sbjct: 431 GYRTVEVQPVDMFPHTAHVECVARVERE 458


>gi|125974255|ref|YP_001038165.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
 gi|125714480|gb|ABN52972.1| 23S rRNA m(5)U-1939 methyltransferase [Clostridium thermocellum
           ATCC 27405]
          Length = 453

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 151/387 (39%), Gaps = 38/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             +L    YE  L  K + +R+ +         V +  +   +P++YR +A++ I    D
Sbjct: 82  GCSLQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDTVGMEQPVNYRNKAQYPIGRYKD 141

Query: 57  DLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105
            +    + +++ E +                      I    I     I  E L+R  + 
Sbjct: 142 GIRAGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNNISTYDEITGEGLVRHIMT 201

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           ++ +   ++ + +V L+ +     + ++   RL   +   K  +  +       I  D +
Sbjct: 202 RVGF---KTGEVMVVLVINGRNIPSQKKLVDRLVKEIPEIKSVVLNVNTKRTNVILGDEN 258

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
              Y  + +T       +     SF Q N      +    L  A    +  + +LYCG G
Sbjct: 259 IVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDYAQLTGKETVFDLYCGIG 318

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL L++   R+  VE+ + +V+ A  N   N V N + +   +++    M        
Sbjct: 319 TISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPEMYE------ 372

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
                    R   + VDPPR G D+A +  +       I+Y+SCNP +L RDL  L    
Sbjct: 373 ------KGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKYLAEGG 426

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
             +  +   D FP+T H+EC  L+ +K
Sbjct: 427 FEVREVQPVDMFPWTYHVECVALIEKK 453


>gi|326804241|ref|YP_004322059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650795|gb|AEA00978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 459

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 155/388 (39%), Gaps = 42/388 (10%)

Query: 3   GTLLIDQ--YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG 55
           GT+ +    Y  QLA K  ++   +    +         I   EP HYR +A+  I    
Sbjct: 87  GTMPLQHMAYPAQLAFKRQQVVNSLQKQGLLEKTQVLETIGMEEPWHYRNKAQIPIGQAD 146

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRAKL 104
             LY   + + + + + +  +      I+  + +++A +   P           LLR  +
Sbjct: 147 GKLYTGFYRKGSHKLVPMTDYQIQLPGIDETLQKVLAILNQYPISAYDEDSHQGLLRHLI 206

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  Y T Q    IV  I  + L +  +  A  L+D L      +    + N T + + +
Sbjct: 207 VRQGYYTGQVMLVIV--INGKKLPEEEKIVAT-LKDELPDLVSIVINSNQKN-TNVIMGQ 262

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219
           D    Y ++        L +R    SF Q N      +    L A      +++ + YCG
Sbjct: 263 DQRVVYGEDLYEDRMFDLTFRISSKSFFQVNTSQAEKLYHQALEAADLKGDEVVVDAYCG 322

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+    V  VE+   ++  AR N   N ++NV      ++E  Q        
Sbjct: 323 IGTISLCLAQAAKEVYGVEVVPDAINQARENAQLNGLDNVTFQAGKAEEVIQ-------- 374

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-S 336
               D      +   + VDPPR GL +  +  V     P I+Y+SCNP +L RDL+    
Sbjct: 375 ----DWVQAGLKPDVVVVDPPRKGLAEDFIQSVLEVQPPKIVYVSCNPATLARDLAKFVD 430

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + + ++   D FP T H+E  V L R
Sbjct: 431 QGYQLGKVQPVDMFPQTHHVEAVVGLTR 458


>gi|312898459|ref|ZP_07757849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera
           micronuciformis F0359]
 gi|310620378|gb|EFQ03948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera
           micronuciformis F0359]
          Length = 460

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 150/387 (38%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QLAEK  +++  +              +   +P  YR + +  +  D  
Sbjct: 87  GCQLQHLSYEGQLAEKRQQVQDAVERIGKLKDVPVLPTLGADDPWAYRNKMQLPVGGDKR 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L+   F +++   + ID         N ++  +   ++   +           +R  + 
Sbjct: 147 SLHIGCFAEKSHRIIDIDACPIQKGGNNEIIPVVRQWMKEYKIPAYDEDKGTGMIRHIMG 206

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR- 164
           +    + +    IVT +    +    +E    LR  +      IQ I  +  T + L   
Sbjct: 207 RTGVHSGEIMVCIVTAV---PMVPHMKELVQMLRKDVPGLTSVIQNIN-SRHTNVILGNK 262

Query: 165 ---DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
               Y    ++ +   L +R    SF Q N+     + +  L+ A       ++++YCG 
Sbjct: 263 TKVIYGSPTISDSIGDLSFRISAQSFFQVNSEQAQKLYDTALSYADLKGNETVVDVYCGT 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +L LA        +EI +P++  A  N   N V N   +   +              
Sbjct: 323 GTITLFLAERAKFAYGIEIVEPAIRDAVKNARDNGVKNAHFMCGDAA------------Y 370

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-T 337
           +L ++     +   I +DPPR+G ++  +  + +     ++Y+SCNP +L RDL+ +   
Sbjct: 371 KLPELLRSGVKPDVIVIDPPRAGCEEKVLNAIASVRPKRVVYVSCNPATLARDLAYMKTR 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  +++   D FP T H+E   L+ R
Sbjct: 431 GYETQKVQPVDMFPQTHHVETACLMSR 457


>gi|121613439|ref|YP_001000516.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|134035056|sp|A1VZH5|TRMA_CAMJJ RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|87249351|gb|EAQ72311.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 357

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 133/352 (37%), Positives = 207/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + + VTL+YH+ ++D  + 
Sbjct: 72  EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTTKQELS-VTLLYHKNIED-IKS 129

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 130 NLENLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV        + DLLELYCG GNF+L LA  F +VLA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|239825905|ref|YP_002948529.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70]
 gi|239806198|gb|ACS23263.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70]
          Length = 459

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 149/389 (38%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K   ++++M              I   +P  YR +A+  +     
Sbjct: 86  GCQLQHLSYEGQLRAKQKHVKEVMARIGKLENVIVHPVIGMKDPWRYRNKAQVPVGEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L    + +++ E + +D  +               +     +     +  + +LR  + 
Sbjct: 146 GLVAGFYQERSHEIIDMDACLIQQEMNDVVVQTVKKICEKYKVPAYNEVTHKGVLRHIMA 205

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +    ++T    L++ + +     +    ++  +     +   +   ++TK+ 
Sbjct: 206 RYGAVTKEVMVVLITRTEELLHKKKIVQEIIDSVPNVKSIIQNINPKKTNVIMGDETKVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + E  L  A    +  +++ YCG 
Sbjct: 266 WGAEYIYDYIG----DIKFAISARSFYQVNPEQTKVLYEKALEYAQLTGKETVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VE+   ++E A+ N   N + NV+     ++             
Sbjct: 322 GTISLFLAKKAKKVYGVEVVPEAIEDAKRNAELNGITNVEFAIGEAEAVIPKWYE----- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
                     R   I VDPPR G D+  +  + A     ++Y+SCNP +L RDL IL   
Sbjct: 377 -------QGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLARDLRILEDG 429

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            +    +   D FP+T H+EC   LV K 
Sbjct: 430 GYQTIEVQPVDMFPHTAHVECVSRLVLKN 458


>gi|260437712|ref|ZP_05791528.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
 gi|292809735|gb|EFF68940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
          Length = 461

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 158/388 (40%), Gaps = 38/388 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56
             TL+   YE+QL  K   +   ++             I    P  YR +A+F +  D D
Sbjct: 81  GCTLMAMSYERQLEFKRHLIENNLIRIGGLSGIEVPPVIGMDNPYRYRNKAQFPVGTDKD 140

Query: 57  DLY-HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104
                  +  +T   +  +  + GS +   ++ E+ A + +             L+R  L
Sbjct: 141 GNIVMGFYAGRTHSIIPNEDCLIGSDINAGILAEIKAFMIMNHIKSYDENSHSGLVRHIL 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  + T Q    +V    +   +D   +  + L  +   +   I +     KT + L +
Sbjct: 201 IRTGFTTGQIMVCVVINGSNIPKEDELVKKLLALSFSNERKIASIMVNINREKTNVILGK 260

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
                Y    +      + YR    SF Q N      +    L    G+ G+  + +LYC
Sbjct: 261 KCRVLYGTPYIEDYIGEVKYRIQPLSFYQVNPVQTEKLYNIALD-YAGLTGNETVWDLYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++E A  N   N ++N +     ++E          
Sbjct: 320 GIGTISLFLAKKAKKVYGVEIVPEAIEDAVTNAKLNGIDNAEFYVGKAEEILP------- 372

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL- 335
               +  D  +     I VDPPR G D+A +G MV+  P  I+Y+SC+  +L RDL  L 
Sbjct: 373 ----EKYDKENVHADVIVVDPPRKGCDEALLGTMVKMAPERIVYVSCDSATLARDLKFLV 428

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + ++++   DQF ++ H+E  VL+V
Sbjct: 429 GNGYEVKKVQGVDQFCHSGHVETVVLMV 456


>gi|157415098|ref|YP_001482354.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|172047119|sp|A8FLP0|TRMA_CAMJ8 RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|157386062|gb|ABV52377.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747739|gb|ADN91009.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931160|gb|EFV10133.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 357

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 133/352 (37%), Positives = 207/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + +I TL+YH+ ++D  + 
Sbjct: 72  EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIED-IKS 129

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 130 NLENLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTT 184

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV        + DLLELYCG GNF+L LA  F +VLA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCK 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|86152063|ref|ZP_01070275.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153337|ref|ZP_01071541.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|315124348|ref|YP_004066352.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840848|gb|EAQ58098.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85843063|gb|EAQ60274.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|315018070|gb|ADT66163.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 357

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 132/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +  +  L+ KLF +++LT++ + + VTL+YH+ ++D  + 
Sbjct: 72  EYLDFADEKICAFMPKLLEYLHQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIED-IKS 129

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 130 NLENLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV        + DLLELYCG GNF+L LA  F +VLA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|138893974|ref|YP_001124427.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250476|ref|ZP_03149167.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
 gi|134265487|gb|ABO65682.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209966|gb|EDY04734.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
          Length = 460

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 143/388 (36%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++++++              I    P  YR +A+  +     
Sbjct: 86  GCQLQHLSYEGQLKAKEKQVKEVLARIGKLEHVTVHPVIGMKNPWRYRNKAQVPVGEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L    + +++ E + +D                  +     +     +    +LR  + 
Sbjct: 146 GLIAGFYKERSHEIIDMDACFIQQEKNDVVVQAVKRIAERYGVRPYDELTHRGVLRHIVA 205

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161
           +    T +    +VT       +       IR    ++  +     +   +    KT++ 
Sbjct: 206 RYGAATGEVMVVLVTRTERLPHEQEIVRDIIRDIPDVKSIVQNINPERTNVIFGAKTRVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +++ +R+      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 266 WGSEFITDRIG----DIQFAISARSFYQVNPEQTKVLYDKALEYAELTGTETVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+    V  VEI   ++E A+ N A N + NV     ++++       E    
Sbjct: 322 GTISLFLAKKAKHVYGVEIVPEAIEDAKRNAALNGITNVTFAVGAAEDVIPRWYEE---- 377

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
                     R   + VDPPR G D A +  + A   P ++Y+SCNP +L RDL IL   
Sbjct: 378 --------GIRADCLVVDPPRKGCDAALLETIMAMKPPRVVYVSCNPATLARDLRILEDG 429

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +    +   D FP+T H+E    L  K
Sbjct: 430 GYETIEVQPVDMFPHTAHVESVARLALK 457


>gi|205372478|ref|ZP_03225291.1| RNA methyltransferase-like protein [Bacillus coahuilensis m4-4]
          Length = 456

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 149/389 (38%), Gaps = 42/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              +    YE QL  K   ++ +M           +  +   +P  YR +A+  +     
Sbjct: 85  GCQIQHMDYEGQLKSKGKHVKDVMERIGKIQNVPVHPVLGMDDPWRYRNKAQVPVGMRQG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALM-----------IEMMATIRLEPLLRAKLF 105
           +L    F + + E + + Y +      + ++           I+     + + ++R  + 
Sbjct: 145 ELVAGFFAKGSHEIVDMPYCIIQHKKNDEVVQLVKDSFKKYGIQPYDEEKHQGVVRHVMV 204

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +  + T +    +VT    L + + L +        L+   H    +   +    +T+I 
Sbjct: 205 RTGHKTGEVMVVLVTKTSKLPFKQQLVEDLVHQVEGLKSIAHNINSKRTNVIMGEETRIL 264

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
               Y+ + +      + +     SF Q N      + +  L    G+ G+  +++ YCG
Sbjct: 265 WGERYIYDYIG----DVRFAISPRSFYQVNPEQTKVLYDKALE-FAGLTGNETVIDAYCG 319

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA     V  VEI   ++  A+ N   N   NV+     +++   A       
Sbjct: 320 IGTISLFLAERAKHVYGVEIVPEAIVDAKRNAELNGFTNVEFEVGPAEDVIPAWYD---- 375

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
                      +   + VDPPR G D+  +  ++      ++Y+SCNP +L RDL +L  
Sbjct: 376 --------RGIKADVLVVDPPRKGCDEKLLDTIKKMKPEKVVYVSCNPATLARDLKVLQE 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +    +   D FP T H+E   LLVRK
Sbjct: 428 GGYYTVEIQPVDMFPQTMHVEAVALLVRK 456


>gi|283957181|ref|ZP_06374645.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791357|gb|EFC30162.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 357

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 131/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F     ++F S+  HYR R E   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKEFKLFASKDKHYRTRVELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + +I TL+YH+ ++D  + 
Sbjct: 72  EYLDFADEKICAFMPKLLECLRQDSKLKEKLFGVEFLTTKQELSI-TLLYHKNIED-IKS 129

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 130 NLENLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV    +   + DLLELYCG GNF+L LA  F ++LA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILSTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFANTPHLECGVFLSK 356


>gi|261418678|ref|YP_003252360.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|319765493|ref|YP_004130994.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
 gi|261375135|gb|ACX77878.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|317110359|gb|ADU92851.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
          Length = 457

 Score =  303 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 46/391 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++++++           +  I    P  YR +A+  I     
Sbjct: 86  GCQLQHLSYEGQLKAKEKQVKEVLARIGKLDGVTVHPVIGMKNPWRYRNKAQVPIGEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L    + +++ E + +D  +               +     I        + +LR  + 
Sbjct: 146 GLVVGFYKERSHEIIDMDACLIQQEKNDVVVQTVKRIAERYGIPPYDETTHKGVLRHIVA 205

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-------KT 158
           +    T +    +VT   H       +E    +   +      +Q I           KT
Sbjct: 206 RYGAATGEVMVVLVTRTEHLP---HEQEIVRAIVREIPDVTSIVQNINPERTNVIFGAKT 262

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
           ++    +Y+ +R+      + +     SF Q N      + +  L  A       +++ Y
Sbjct: 263 RVLWGSEYITDRIG----DIQFAISARSFYQVNPEQTKVLYDKALEYAELTGSETVMDAY 318

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  SL LAR    V  VEI   ++E A+ N   N + NV     ++++      +E 
Sbjct: 319 CGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAELNGIRNVTFEVGAAEDVIPRWYQE- 377

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                        R   + VDPPR G D + +  + A   P ++Y+SCNP +L RDL IL
Sbjct: 378 -----------GIRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLARDLRIL 426

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
               +    +   D FP+T H+EC   +  +
Sbjct: 427 EDGGYETIEVQPVDMFPHTAHVECVAKIQLR 457


>gi|295400536|ref|ZP_06810514.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294977439|gb|EFG53039.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 459

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 149/387 (38%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K  +++++M              I    P  YR +A+  +     
Sbjct: 86  GCQLQHLSYDGQLRAKQKQVKEVMARIGKLENVIVHPVIGMKNPWRYRNKAQVPVGEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L    + +++ E + +D  +               +     I +      + +LR  + 
Sbjct: 146 RLVVGFYQERSHEIIDMDACLIQQEMNDAVVRTVKKICEKYRIPVYNEATHKGVLRHIMA 205

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +    T +    ++T    L + + +     E    ++  +     +   +   ++TK+ 
Sbjct: 206 RYGAATQEVMVVLITRTAELPHKKKIVQEIIESVPNVKSIIQNINPKKTNVIMGDETKVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + E  L  A    +  +++ YCG 
Sbjct: 266 WGAEYIYDYIG----DIQFAISARSFYQVNPAQTKVLYEKALEYAQLTGEETVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VE+   ++E A+ N A N + NV+     ++       +     
Sbjct: 322 GTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFAVGEAEAVIPKWYK----- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
                     R   I VDPPR G D+  +  + A     ++Y+SCNP +L RDL IL   
Sbjct: 377 -------QGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLARDLRILEDG 429

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +    +   D FP+T H+EC  L+ R
Sbjct: 430 GYQTLEVQPVDMFPHTAHVECCALIKR 456


>gi|86150214|ref|ZP_01068441.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597584|ref|ZP_01100818.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|85839330|gb|EAQ56592.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190176|gb|EAQ94151.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|284926076|gb|ADC28428.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927708|gb|EFV07037.1| tRNA-uracil-5-methyltransferase [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929085|gb|EFV08317.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 357

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 132/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M  ++  +R +  L+ KLF +++LT++ + +I TL+YH+ ++D  + 
Sbjct: 72  EYLDFADEKICAFMPRLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIED-IKS 129

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 130 NLENLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV        + DLLELYCG GNF+L LA  F ++LA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYGNIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|218562459|ref|YP_002344238.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|20178174|sp|Q9PP92|TRMA_CAMJE RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|112360165|emb|CAL34959.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
          Length = 357

 Score =  302 bits (773), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 132/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD ++K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M  ++  +R +  L+ KLF +++LT++ + +I TL+YH+ ++D  + 
Sbjct: 72  EYLDFADEKICAFMPRLLEYLRQDNKLKEKLFGVEFLTTKQELSI-TLLYHKNIED-IKS 129

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 130 NLENLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV        + DLLELYCG GNF+L LA  F ++LA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYGNIIYISCNPMTLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|312112373|ref|YP_003990689.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1]
 gi|311217474|gb|ADP76078.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1]
          Length = 459

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 149/387 (38%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K  +++++M              I    P  YR +A+  +     
Sbjct: 86  GCQLQHLSYDGQLRAKQKQVKEVMARIGKLENVIVHPVIGMKNPWRYRNKAQVPVGEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L    + +++ E + +D  +               +     I +      + +LR  + 
Sbjct: 146 RLVAGFYQERSHEIIDMDACLIQQEMNDAVVRTVKKICEKYRIPVYNEAAHKGVLRHIMA 205

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +    T +    ++T    L + + +     E    ++  +     +   +   ++TK+ 
Sbjct: 206 RYGAATQEVMVVLITRTAELPHKKKIVQEIIESVPNVKSIIQNINPKKTNVIMGDETKVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + E  L  A    +  +++ YCG 
Sbjct: 266 WGAEYIYDYIG----DIQFAISARSFYQVNPAQTKVLYEKALEYAQLTGEETVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VE+   ++E A+ N A N + NV+     ++       +     
Sbjct: 322 GTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFAVGEAEAVIPKWYK----- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
                     R   I VDPPR G D+  +  + A     ++Y+SCNP +L RDL IL   
Sbjct: 377 -------QGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLARDLRILEDG 429

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +    +   D FP+T H+EC  L+ R
Sbjct: 430 GYQTLEVQPVDMFPHTAHVECCALIKR 456


>gi|332798852|ref|YP_004460351.1| TrmA family RNA methyltransferase [Tepidanaerobacter sp. Re1]
 gi|332696587|gb|AEE91044.1| RNA methyltransferase, TrmA family [Tepidanaerobacter sp. Re1]
          Length = 460

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 149/385 (38%), Gaps = 39/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L    YE QL  K  +++  +      + +    I   +P HYR ++++ +   G+ 
Sbjct: 87  GCNLQHMTYEAQLLFKTSKVKDSLKRIGHIDAEVIDTIGMQQPWHYRNKSQYPVAKQGNS 146

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                + +++ + + ++  +    +           +    I +   ++ E L+R  + +
Sbjct: 147 TVMGFYKKRSHDIVDLENCLIQHPISDKVMQIIKRWLTRYDISIYDELKHEGLIRHVMVR 206

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICL 162
           +   + +   A++         D      +      +  +     +   +    K     
Sbjct: 207 VGNKSKEVMAALIANGKEIPHTDDLIKMLQCDIPGFKSLILNINTKKTNVIMGEKNITLY 266

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
              Y+ + +      + +R    SF Q N      +   VL      Q + +L+LYCG G
Sbjct: 267 GSPYIYDYIG----DIKFRLSPLSFFQVNPIQAEVLYNKVLEYAGITQDEIVLDLYCGTG 322

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L LA+   +   +E+   +V  AR N   N +NN + +  +++     M  E     
Sbjct: 323 TITLFLAQKAKKAYGIELVSQAVADARLNAKINGINNAEFIEGAAEAVLPKMAEE----- 377

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TT 338
                    +   I VDPPR G D+ T+  +       I+Y+SCNP +L RDL  L    
Sbjct: 378 -------GIKPDIIVVDPPRRGCDEKTLKTITKISPKKIIYVSCNPATLARDLRYLEDKG 430

Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363
           +  ++    D FP T H+EC VL+ 
Sbjct: 431 YKTQKAQPVDMFPQTSHVECVVLMT 455


>gi|323705003|ref|ZP_08116579.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535429|gb|EGB25204.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 453

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 165/386 (42%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57
             TL    Y  QL  K   + + +      ++ +F     ++P+HYR +AE+ +      
Sbjct: 82  GCTLQHLTYSGQLEFKKHVVGESLKRIGKIDIVVFDTIGMADPLHYRDKAEYPLSIKNGK 141

Query: 58  LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106
           +    +  ++ E + ID  M  S              N   I +      +  LR  + +
Sbjct: 142 IEGGFYASKSHEVVGIDSCMIQSSVSVNAMKTVVEWANDYKITVYDKKTGKGFLRHVITK 201

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
           + + T    + +V ++ +       +E   RL+  +   K  +  + R+N  ++  + + 
Sbjct: 202 VGFATK---EVMVIIVANSRDIPHKKELVSRLKGKIENLKSVVLNVNRSNGKQVMGNENI 258

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221
             Y D+ +T       +     SF Q N      + E  L     ++GD  + ++YCG G
Sbjct: 259 VIYGDDYITDFIGDKKFEISPLSFFQVNPVQTKVLYEKALE-YADLKGDEIVFDVYCGIG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             S+  A+H  +V  +E+   +VE AR N A N VNN + +   +++             
Sbjct: 318 TISIFFAKHARKVYGIEVIPDAVEDARQNAAINGVNNAEFIAGKAEDI------------ 365

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILS-TT 338
           + ++     +   I  DPPR GLD   V   ++  P  I+Y+SCNP +L RDL I     
Sbjct: 366 MIELCNKGLKPDVIVFDPPRKGLDKDVVEASIKMNPEKIIYVSCNPTTLARDLRIFEDNG 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +  +++   D FPYT H+EC VL+ R
Sbjct: 426 YRTKKVQPVDMFPYTYHVECVVLMSR 451


>gi|89097040|ref|ZP_01169931.1| YefA [Bacillus sp. NRRL B-14911]
 gi|89088420|gb|EAR67530.1| YefA [Bacillus sp. NRRL B-14911]
          Length = 458

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 146/389 (37%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ Q+  K  ++R ++              +  SEP  YR +A+  I     
Sbjct: 85  GCQLQHLSYQGQMLAKEKQVRDVLTRIGKLEDVKVHPVLGMSEPWRYRNKAQVPIGEHEG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105
            L    + Q++ + + +   +      + ++  +                 +  LR  + 
Sbjct: 145 GLIGGFYQQRSHQIIDMKECLIQQEKNDEVVQTVKEICAKYGVRAYDEGRHKGELRHIMA 204

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +    ++T    L   + + +        ++  +H    +   +   + T++ 
Sbjct: 205 RHGLVTGEVMVVLITRTNELPNRKKITEEIAASIKGIKSIVHNVNPKKTNVIFGDVTRVI 264

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
                 +E +      + +     SF Q N      + E  L  A    +  +++ YCG 
Sbjct: 265 WG----EEVIYDYIGDIKFAISARSFYQVNPEQTKVLYEKALEYADLSGEESVIDAYCGI 320

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VEI   ++E A+ N A N + N +     +++      +E    
Sbjct: 321 GTISLFLAQKAKKVFGVEIVPEAIEDAKRNAALNGITNAEFAVGEAEKVIPDWYKE---- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
                     +   + VDPPR G D+A +  + +     ++Y+SCNP +L RDL IL   
Sbjct: 377 --------GNQADVLVVDPPRKGCDEALLQTILSMKPKKVVYVSCNPATLARDLRILEDG 428

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            +  E +   D FP T H E    +  K 
Sbjct: 429 GYKTEEVQPVDMFPQTMHCEAVAKITLKD 457


>gi|251794918|ref|YP_003009649.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2]
 gi|247542544|gb|ACS99562.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2]
          Length = 465

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 145/402 (36%), Gaps = 57/402 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--------------VPNLQIFRSEPIHYRMRA 47
              L    Y  QL  K   +   +                    +  +  ++P  YR +A
Sbjct: 83  GCQLQHMDYAAQLNWKRQHVVDALERIGKLQIAGEGEEASGITVHPTVGMNDPWRYRNKA 142

Query: 48  EFHIWHDGD--DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATI 94
           +  +       +L    + + +   +  D                  +   L +      
Sbjct: 143 QVPVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEVVRIVKAIGRELGVSAYDEE 202

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG- 153
             + LLR  + +  +++ +    +VT        + W E   R+R AL   K  +Q +  
Sbjct: 203 SGKGLLRHVMTRTGFVSGEIMVVLVTNGRKLPQAELWVE---RIRAALPEVKSIVQNVNT 259

Query: 154 ------RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-AT 206
                   ++TK+    + + + L      + +     SF Q N    + +    +  A 
Sbjct: 260 RDTNVIFGDETKVLWGSEVIYDEL----DGIRFAISARSFYQVNPSQTIELYRTAVDYAQ 315

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
              +  +++ YCG G  SL LAR   RV  VEI   ++E A+ N   N ++N       +
Sbjct: 316 LTGKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELNGISNASFEAGPA 375

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCN 324
           +      R E                  I VDPPR G D A +  +       ++Y+SCN
Sbjct: 376 EVVIPRWREE------------GIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCN 423

Query: 325 PDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +L RDL  L    +    +   D FP+T H+EC V +VRK
Sbjct: 424 PSTLARDLRTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVRK 465


>gi|326791042|ref|YP_004308863.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
           5427]
 gi|326541806|gb|ADZ83665.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
           5427]
          Length = 452

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 152/387 (39%), Gaps = 41/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  +++  +     + ++++        P HYR +A++ I     
Sbjct: 83  GCQLQHLSYEAQLDWKTKKVKDCLNRIGGLKDIEVLPTLGMGTPYHYRNKAQYPIRQING 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105
            +    F  ++ + + ++          A+M  ++A +               L+R  + 
Sbjct: 143 KVQTGFFAPRSHQLIPLETCYIQDPKKEAIMKAVLAFLEKYKISIYDEEKHTGLVRHLMI 202

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +  Y T   ++ +V L+ +        E    ++         I L     K+   L   
Sbjct: 203 KTGYHT---EEMMVCLVINGPKLPHADEFVKAIKAVAP--VTSIILNQHLEKSNTILGNS 257

Query: 166 Y----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
                 +  +      L ++    SF Q N      +    L   +    + + + YCG 
Sbjct: 258 CTVLDGENAIIDYIGDLQFKISPLSFFQVNPQQTEVLYTKALEYAELTGDEIVWDAYCGI 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A NH+ N +     ++E    M       
Sbjct: 318 GSISLFLAQKAKKVYGVEIIPEAIENAKENAALNHITNAEFYVGKAEEVIPQMYE----- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-ST 337
                        TI VDPPR G D   +  +++  P  I+Y+SC+P +L RDL+ L + 
Sbjct: 373 -------QGIVADTIVVDPPRKGCDSKLLETLIKMSPNKIVYVSCDPATLARDLAYLVAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + ++++   D FP T H+E  V L R
Sbjct: 426 GYQVDKVQPVDMFPQTTHVETVVKLSR 452


>gi|313892756|ref|ZP_07826337.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313442687|gb|EFR61098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 494

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 42/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL+ K  +++ ++         +    +   EP  YR + +  +     
Sbjct: 123 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPDLVKPALGPKEPWAYRNKMQMPVGGTKG 182

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEP--------LLRAKLF 105
           D+    +   + + ++            +I     ++     +EP        +LR  + 
Sbjct: 183 DIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDEHTGNGILRHVIG 242

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +I    S     +VT   H    + W E   +L + +   +  +  +    +T + L   
Sbjct: 243 RIGQ--SGWMIILVTATDHLPHQEKWVE---KLTERIPQVETIVHNVN-GKRTNVILGPK 296

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
               Y D  +T   + L +    +SF Q N      + +  LA A       +++ YCG 
Sbjct: 297 NNILYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGDETVIDAYCGT 356

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA     V+ +EI +P++  AR N   N  +N + +   +              
Sbjct: 357 GTISLFLAHKAKHVIGIEIVEPAIINARENAKCNGYDNTEFIVADAA------------V 404

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337
            +  +     R   I  DP R+G  +  +          I+Y+SCNP ++ RD+ IL+  
Sbjct: 405 EMPKLYKAGVRADVIVFDPIRAGCKEEVLTSAAGMEPKRIVYVSCNPATMARDIEILTHY 464

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + ++ +   D FP T H+E   LL RK 
Sbjct: 465 GYELKEVQPVDMFPMTAHVETVCLLSRKD 493


>gi|153956154|ref|YP_001396919.1| tRNA (uracil-5-)-methyltransferase-related protein [Clostridium
           kluyveri DSM 555]
 gi|146349012|gb|EDK35548.1| TRNA (uracil-5-)-methyltransferase-related protein [Clostridium
           kluyveri DSM 555]
          Length = 469

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 154/402 (38%), Gaps = 53/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------------------IFRSEPIHY 43
              L    Y+ QL+ K +R++  +       +                   I    P  Y
Sbjct: 83  GCQLQHLSYDGQLSFKENRVKDCLERIGKLQVISGEQSIHQHGSVTKLYHTIGMENPYRY 142

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMA 92
           R + +  +    + +    + +++ E + +      S             I    IE   
Sbjct: 143 RNKVQLPVGSSKNGINIGFYAKKSHEIINMTSCFIQSETSDKIVKLIRQWIEKYNIEPYN 202

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQ 148
               + ++R  + +  + T++    IVT + H      + E   R    ++  +      
Sbjct: 203 EKNGKGIIRHIMIREAFTTAEIMVVIVTAVSHLPYKKEFIEIITRNVPVIKSIVQNINRD 262

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
              +    +  I   RD +++ +        +     SF Q N      +   VL     
Sbjct: 263 RTNVIMGKECIILWGRDTINDYIG----KFKFSISPLSFFQVNPVQTEVLYNKVLEYAGL 318

Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +++ + YCG G  SL L++   +V  VEI   ++E A  N A N ++NV+ +   S+
Sbjct: 319 TGNEVIFDAYCGTGTISLFLSQKAKKVYGVEIIPQAIENANMNAAENGIDNVEFITGKSE 378

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNP 325
           +             + ++     R   + VDPPR G ++A +  +    P  I+Y+SC+P
Sbjct: 379 KV------------IPELIKKGVRADVVVVDPPRKGCEEALLHSIADMRPRTIVYVSCDP 426

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
            +L RDL+IL    + +E++   D FP T H+E  V L R+ 
Sbjct: 427 ATLARDLAILRDFGYRVEKVQPVDMFPQTSHVETIVSLQREN 468


>gi|219856479|ref|YP_002473601.1| hypothetical protein CKR_3136 [Clostridium kluyveri NBRC 12016]
 gi|219570203|dbj|BAH08187.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 478

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 154/402 (38%), Gaps = 53/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------------------IFRSEPIHY 43
              L    Y+ QL+ K +R++  +       +                   I    P  Y
Sbjct: 92  GCQLQHLSYDGQLSFKENRVKDCLERIGKLQVISGEQSIHQHGSVTKLYHTIGMENPYRY 151

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMA 92
           R + +  +    + +    + +++ E + +      S             I    IE   
Sbjct: 152 RNKVQLPVGSSKNGINIGFYAKKSHEIINMTSCFIQSETSDKIVKLIRQWIEKYNIEPYN 211

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQ 148
               + ++R  + +  + T++    IVT + H      + E   R    ++  +      
Sbjct: 212 EKNGKGIIRHIMIREAFTTAEIMVVIVTAVSHLPYKKEFIEIITRNVPVIKSIVQNINRD 271

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
              +    +  I   RD +++ +        +     SF Q N      +   VL     
Sbjct: 272 RTNVIMGKECIILWGRDTINDYIG----KFKFSISPLSFFQVNPVQTEVLYNKVLEYAGL 327

Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +++ + YCG G  SL L++   +V  VEI   ++E A  N A N ++NV+ +   S+
Sbjct: 328 TGNEVIFDAYCGTGTISLFLSQKAKKVYGVEIIPQAIENANMNAAENGIDNVEFITGKSE 387

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNP 325
           +             + ++     R   + VDPPR G ++A +  +    P  I+Y+SC+P
Sbjct: 388 KV------------IPELIKKGVRADVVVVDPPRKGCEEALLHSIADMRPRTIVYVSCDP 435

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
            +L RDL+IL    + +E++   D FP T H+E  V L R+ 
Sbjct: 436 ATLARDLAILRDFGYRVEKVQPVDMFPQTSHVETIVSLQREN 477


>gi|297528755|ref|YP_003670030.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
 gi|297252007|gb|ADI25453.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
          Length = 457

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 144/387 (37%), Gaps = 46/387 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++++++           +  I    P  YR +A+  I     
Sbjct: 86  GCQLQHVSYEGQLKAKEKQVKEVLARIGKLDGVTVHPVIGMKNPWRYRNKAQVPIGEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L    + +++ E + +D  +               +     I        + +LR  + 
Sbjct: 146 GLVAGFYKERSHEIIDMDACLIQQEKNDVVVQTVKRIAERYGIPPYDETTHKGVLRHIVA 205

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-------KT 158
           +    T +    +VT   H       +E    +   +      +Q +           KT
Sbjct: 206 RYGAATGEVMVVLVTRTEHLP---HEQEIVRAIVREIPDVTSIVQNVNPERTNVIFGAKT 262

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
           ++    +++ +R+      + +     SF Q N      + +  L  A    +  +++ Y
Sbjct: 263 RVLWGSEFITDRIG----GIQFAISARSFYQVNPEQTKVLYDKALEYAELTGRETVIDAY 318

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  SL LAR    V  VEI   ++E A+ N   N + NV     ++++       E 
Sbjct: 319 CGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAKPNGIQNVTFEVGAAEDVIPRWYEE- 377

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                        R   + VDPPR G D + +  + A   P ++Y+SCNP +L RDL IL
Sbjct: 378 -----------GIRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLARDLRIL 426

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVL 361
               +    +   D FP+T H+EC   
Sbjct: 427 EDGGYETIEVQPVDMFPHTAHVECVAK 453


>gi|288554996|ref|YP_003426931.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288546156|gb|ADC50039.1| RNA methyltransferase, TrmA family [Bacillus pseudofirmus OF4]
          Length = 459

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 143/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  +++ ++           +  +  ++P  YR +A+  +  +  
Sbjct: 86  GCQLQHMSYEAQLTYKQKQVKDVLARIGQITDIPVHPTLGMNDPWRYRNKAQVPVGEEEG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105
            L    + +++   + +D  +               +     I      + +  LR  + 
Sbjct: 146 GLIAGFYQERSHRIIDMDECLIQHQENDDVVSKVKEIAKKYGIRGYDEDKHKGTLRHVVA 205

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +    T      +VT    L   + + +  RE    ++  +     +   +   ++T + 
Sbjct: 206 RYGKQTGDIMVVLVTRGKELPNKKNIIEEIRESIPDVKSIVQNINPKRTNVIFGDQTIVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 266 WGDEYIYDSIG----DIRFAISARSFYQVNPDQTKVLYDKALEYADLKGDETVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+    V  VEI   ++  A+ N   N   NV      ++             
Sbjct: 322 GTISLFLAQKAKHVYGVEIVPEAISDAKKNAEINGFTNVDFAVGEAENVMPWWYA----- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
                     R   I VDPPR G D+  +  +       ++Y+SCNP +L RDL +L   
Sbjct: 377 -------QGIRPDVIVVDPPRKGCDEKLLETILNMKPKRVVYVSCNPATLARDLRVLEDG 429

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +  + +   D FP++ H+E    +VRK +
Sbjct: 430 GYKTKEVQPVDMFPHSTHVEVVSQIVRKGN 459


>gi|121533508|ref|ZP_01665336.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans
           Nor1]
 gi|121308067|gb|EAX48981.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans
           Nor1]
          Length = 462

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 154/392 (39%), Gaps = 42/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K  ++   ++        V +  +    P +YR + +F +   G+
Sbjct: 88  GCQLQHLSYAAQLTVKRQQVVDAIMRIGKLDGVVVHPTLPAPNPWYYRNKMQFPVGLAGN 147

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
                 + Q T + +  ++                 ++N L I        + ++R  L 
Sbjct: 148 RAVVGCYAQGTHDIVDTEHCYIQHQANNIIAAVMRDVVNKLGIATYDERTGKGVIRHILG 207

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           ++   T +    IVT        +       +L  A+      +Q I     T + L  +
Sbjct: 208 RVGTATGEVMAVIVTATRELPHRE---RLIAKLTKAVPGLVSIVQNINPKR-TNVILGEE 263

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCG 219
               +  E +T      +++    SF Q N    V +    +    G+ G    ++ YCG
Sbjct: 264 TSVIWGKETITDRLGGFVFQISARSFFQVNTEQTVRLYNKAVE-YAGLTGVETAIDAYCG 322

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L LA+   +V  +E+ +P+V  A  N   N V+NV  +   + +    + +    
Sbjct: 323 TGTITLFLAKRAAKVYGIEVVEPAVRDAWLNARRNGVDNVDFIVGDAVDVMPKLYK---- 378

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST 337
                      R + I VDPPR+G D   +   V+  P  I+Y+SCNP SL RDL++L+ 
Sbjct: 379 --------SGVRPQAIVVDPPRAGCDRRVLETFVRMQPDRIVYVSCNPASLARDLAVLAE 430

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
             +    +   D FP T H+EC V L RK S 
Sbjct: 431 CGYMTREIQPVDMFPQTSHIECVVSLKRKHSE 462


>gi|229542669|ref|ZP_04431729.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
 gi|229327089|gb|EEN92764.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
          Length = 457

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 145/385 (37%), Gaps = 40/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L   +Y+ QL  K +++RQ +              I    P HYR +A+  +     
Sbjct: 85  GCQLAHIRYDGQLMYKENQVRQALARIGKIEGARIHPMIGMDNPWHYRNKAQVPVGEKNG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105
            L    F  +T E +  D  +     +N            L I          +LR  + 
Sbjct: 145 KLVAGFFKPRTHEILDADESVIQLPAVNEAVQVVKEICRELGIPAYDEEHHSGVLRHIMV 204

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +    T +    ++T    L + + L D       +++  +H    +   +    KTK+ 
Sbjct: 205 RYGRKTGELMVVLITRTVELPHRKKLVDLVVSRLPQVKSIVHNINPKRTNVILGEKTKVL 264

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              + + +++      + +     SF Q N      + E  L  A       +++ YCG 
Sbjct: 265 WGNEVIYDKIG----DIKFAISAPSFYQVNPVQTKVLYEKALEYAELTGSETVIDAYCGI 320

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VEI   ++E A+ N A N + NV+    +++             
Sbjct: 321 GTISLFLAQKARKVFGVEIVPEAIEDAKRNAALNGITNVEFEAGTAETVIPKWYE----- 375

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-T 337
                     +   + VDPPR G D+A +  +       ++Y+SCNP +L RDL  L   
Sbjct: 376 -------AGNKADVLVVDPPRKGCDEALLKTILEMKPQKVVYVSCNPATLARDLRFLETG 428

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            +    +   D FP+T H+E    L
Sbjct: 429 GYRTVEVQPVDMFPHTTHVEVVTKL 453


>gi|225026465|ref|ZP_03715657.1| hypothetical protein EUBHAL_00714 [Eubacterium hallii DSM 3353]
 gi|224956204|gb|EEG37413.1| hypothetical protein EUBHAL_00714 [Eubacterium hallii DSM 3353]
          Length = 382

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 87/388 (22%), Positives = 161/388 (41%), Gaps = 43/388 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLY 59
            G   ID  YE+QL +K     +++ +F      I   +P HYR +    +  D   + +
Sbjct: 12  GGCQYIDLPYEEQLKKKQKNTNKLLKSFGKVKPIIGMKDPWHYRNKVHGVVAGDRHGNCF 71

Query: 60  HIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPL--------LRAKLFQID 108
             +++ ++   +R+D  +  +     I   +  +M + ++ P         LR  L +  
Sbjct: 72  TGIYENRSHRVIRVDSCLIENQKADEIMNTVTSLMKSFKMRPYNEDTGYGFLRHILVRTG 131

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161
           Y T Q    +VT      +  +       LR         I  +          +K +I 
Sbjct: 132 YHTGQIMVVLVTA---SPVFPSKNNFVKALRKEHPEITTIIANVNNRNTSMVLGDKQQIL 188

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             + Y+++ L        +R    SF Q N      +    +  A    +  +++ Y G 
Sbjct: 189 YGKGYIEDVLCGK----TFRISPKSFYQVNPIQTEVLYNKAIEFAGLTGKERVIDAYSGI 244

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   +V + +   V++VE+   +V  A +N   N V N++  +  + +F   M   +E  
Sbjct: 245 GTIGMVASDNAGEVISVELNGDAVRDAVFNAKQNKVKNIRFYKDDAGDFMVKMASHKE-- 302

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST- 337
                     +   +F+DPPRSG D   +  +++  P  ++YISCNP++L RDL  L+  
Sbjct: 303 ----------KADVVFMDPPRSGSDKKFLDSLLRLRPKKVVYISCNPETLARDLKHLTGN 352

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + I+ +   D FP T H+E   LL R+
Sbjct: 353 GYRIKEIQPVDMFPSTGHVEAVCLLSRR 380


>gi|220930233|ref|YP_002507142.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10]
 gi|220000561|gb|ACL77162.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10]
          Length = 460

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 90/388 (23%), Positives = 155/388 (39%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              +    Y+ QL  K D + Q +         V N  I    P  YR + ++ +  D  
Sbjct: 87  GCAVQHMTYQAQLDFKKDTVLQNIRRIGGIQDVVVNDTIGMENPYKYRNKVQYPVGWDNG 146

Query: 57  DLYHIMFDQQTKERMR---IDYFMPGSLLINALM--------IEMMATIRLEPLLRAKLF 105
           ++    ++ ++   +     D     S  I  ++        I +      + LLR  + 
Sbjct: 147 EITIGFYETRSHNIIDGSLCDIQPDESNKIRDIVRSFCKDAGIAIYDEKTGKGLLRHVMV 206

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR- 164
           +  + T++    +V      L  D   +   +L +     K  I  +   N T I L   
Sbjct: 207 RKGFRTNEIMVVLVINGDKLLKSD---DLVKKLLEEFPDIKSIILNVNTKN-TNIILGNK 262

Query: 165 ---DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
               Y    +T    +  +     SF Q N      + E  L    G+ G+  + +LYCG
Sbjct: 263 NICIYGQMYITDFIGSFKFEISPLSFFQVNPIQTEVLYEKALE-YAGLSGNETVFDLYCG 321

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL L++   RV+ VE+   ++  AR N   N + NV+ +   +++    M      
Sbjct: 322 IGTISLYLSQRAKRVIGVEVVPDAISDARRNAELNGITNVEFLVGEAEKVIPDMYS---- 377

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +V+  P  I+Y+SCNP +L RDL  L+ 
Sbjct: 378 --------QGVKADVVVVDPPRKGCDEVLLSTLVEMQPQRIVYVSCNPSTLARDLKYLTE 429

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364
               ++ +   D FP+T H+EC VL+ R
Sbjct: 430 HGFEVKEVQPVDMFPWTGHVECVVLMSR 457


>gi|319647052|ref|ZP_08001278.1| YefA protein [Bacillus sp. BT1B_CT2]
 gi|317390876|gb|EFV71677.1| YefA protein [Bacillus sp. BT1B_CT2]
          Length = 458

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 150/390 (38%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K  +++ ++             +  +   +P +YR +A+  +   
Sbjct: 85  GCQLQHINYEGQLLYKQKQVKDVLERIGKLDLSRITVHPTLGMEDPWNYRNKAQVPVGER 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              L    + Q++ E + ++  +               +     I+     R +  LR  
Sbjct: 145 EGGLIAGFYQQRSHEIIDMNECLIQQSENDRVVQAIKEICGKYGIKAYNEERHKGWLRHI 204

Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           + +   +T +     +T      H+  + +        ++  +     +   +   ++T 
Sbjct: 205 MVRYGAVTGEMMVVFITRTNDFPHKAKIVEEITAAFPHVKSIVQNINPKKTNVIFGDETT 264

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +    +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YC
Sbjct: 265 VIWGEEYIYDTIG----GIKFAISARSFYQVNPEQTKVLYDKALEYAELNGEETVIDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++        E  
Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAEFEVGEAEVVIPKWYEE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                          T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L 
Sbjct: 379 ----------GIAADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLARDLRVLE 428

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365
              +    +   D FP+T H+EC VLLV+K
Sbjct: 429 DGGYVTREVQPVDMFPHTAHVECCVLLVKK 458


>gi|291527500|emb|CBK93086.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale M104/1]
          Length = 493

 Score =  299 bits (765), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 95/412 (23%), Positives = 161/412 (39%), Gaps = 49/412 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52
              +    YE+QL  K +++R  ++                 +    P  YR +A+F + 
Sbjct: 79  GCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGADNPYRYRNKAQFPVG 138

Query: 53  HDGDDLYH-IMFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLEP--------LL 100
           +D D       +  ++   + ++     +P +  I  ++ E M    + P        L+
Sbjct: 139 YDRDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLV 198

Query: 101 RAKLFQIDYLTSQSDQAIV----TLIYHRLLDDAWRECAIRLR--DALHARKYQIQ---- 150
           R  L +  + + Q    +V    +L   R   +A      RL   D + +  Y I     
Sbjct: 199 RHVLIRYGFTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMTSISYNINKENT 258

Query: 151 LIGRANKTKICLDRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
            +    KT     R Y+++ +        T  G  + Y+    SF Q N      +    
Sbjct: 259 NVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTA 318

Query: 203 LA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           LA A      ++ +LYCG G  SL L++   +V  VEI   ++E A+ N   N + N + 
Sbjct: 319 LAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNNAKLNGITNAQF 378

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSY------RFKTIFVDPPRSGLDDATVGMVQAY 315
               ++E         +       D  S       R   I VDPPR G D+  +  + A 
Sbjct: 379 FVGKAEEVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGCDEKCLDTMLAM 438

Query: 316 --PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
               I+Y+SC+  +L RDL IL    + + +   FDQF +T H+E   LL R
Sbjct: 439 SPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490


>gi|323341240|ref|ZP_08081486.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323091297|gb|EFZ33923.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 469

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 160/379 (42%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QL  K  +++ ++    + +++    I   +P HYR +A+  +     DL    F +
Sbjct: 103 YPAQLKFKQKQIQDLLKKAHLDDIEVAETIGMKDPFHYRNKAQVPVRGTKGDLKTGFFKR 162

Query: 66  QTKERMRIDYFMPGSLLINALMIEM---MATIRLEPL--------LRAKLFQIDYLTSQS 114
            +   + ++ F+     I+ ++ E+   +    LEP         +R  + +I + + ++
Sbjct: 163 GSHNFLPLENFLIQDERIDEILKEVIKVLNAYELEPYDEERHSGMIRHLMVRIGHYSREA 222

Query: 115 DQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
              IVT    L + R + +        +   +         +    KTK+   +D++ + 
Sbjct: 223 MVVIVTKNGRLPHDREIAEKIVAACPDVVSVMQNVNRDRTNVILGQKTKLLFGKDHIKDT 282

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR 229
           L      L +     SF Q N      + +  +  A    +   ++ YCG G  SL LA 
Sbjct: 283 L----NGLEFDISAQSFYQVNPVQTEKLYQTAIKFANLTGEETAIDAYCGIGTISLSLAE 338

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V  VEI + ++E A+ N   N ++N++    +++++    +               
Sbjct: 339 KCRAVYGVEIVEAAIEDAKRNAELNELDNLRFEVGNAEDWMAKWKE------------KG 386

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIE-RLA 345
            R   I VDPPR GL ++ +          I+Y+SCNP +L RD+  L    + +E R+ 
Sbjct: 387 IRPNVIMVDPPRKGLTESLIESATGMNPDRIVYVSCNPATLVRDIQSLMEKGYHVEGRIQ 446

Query: 346 LFDQFPYTRHMECGVLLVR 364
             DQFP T H+EC  ++ R
Sbjct: 447 PVDQFPQTAHVECVTVMER 465


>gi|42779444|ref|NP_976691.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|51316698|sp|Q73EJ5|Y363_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0363
 gi|42735360|gb|AAS39299.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987]
          Length = 460

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 152/387 (39%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIATKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  + +   D FP+T H+EC VL+ R
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVVLMSR 457


>gi|307244221|ref|ZP_07526336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492371|gb|EFM64409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           stomatis DSM 17678]
          Length = 544

 Score =  298 bits (764), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 155/391 (39%), Gaps = 35/391 (8%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG 55
            G  + +  Y++QL  K + +++ +              I   +P  YR +A+F +  + 
Sbjct: 80  GGCQIQELDYQKQLDLKTNIVKEDLKRIGGLENVQVFDTIGMEKPFRYRNKAQFPVQMED 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQID 108
             L    + +++ + + ID  +           +I   + E   +I  E   +  L  I 
Sbjct: 140 GKLKIGFYRKKSHDIIDIDKCLIQDEKNDLIIDIIRKYIEEENISIYDEKSHKGLLRHIV 199

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD---- 163
                 S Q +V L+               L+D +      +  I   +KT + L     
Sbjct: 200 TKVGFTSGQVMVVLVATEDRFKNLDRLIESLKDQVEGFTSLVVNIN-KDKTNVILGLKNI 258

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
             Y + ++      L +     SF Q N      +    L      +GD + ++YCG G 
Sbjct: 259 NKYGNGKIVDNIGDLKFEISPLSFFQVNPIQTDVLYNKALEYADLKEGDRVFDIYCGIGT 318

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+  + V  VEI + +++ AR N   N ++N++     ++E    + +E      
Sbjct: 319 ISLFLAQKAEFVYGVEIVEDAIKDARLNAKLNGMDNLEFFVGKAEEVVPEIYKE------ 372

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339
                   +   + VDPPR G D+  +  +       ++Y+SCNP +L RDL  L    +
Sbjct: 373 ------GKKANVVVVDPPRKGCDERVLDTIVEMEPDRVVYVSCNPSTLARDLRYLEDRGY 426

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
             E++   D FP++ H+E   LL +     H
Sbjct: 427 RCEKVQPVDLFPHSVHVETVALLSKLDVDKH 457


>gi|154147974|ref|YP_001406923.1| tRNA (uracil-5-)-methyltransferase [Campylobacter hominis ATCC
           BAA-381]
 gi|262827640|sp|A7I332|TRMA_CAMHC RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|153803983|gb|ABS50990.1| tRNA (uracil-5-)-methyltransferase [Campylobacter hominis ATCC
           BAA-381]
          Length = 357

 Score =  298 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 129/362 (35%), Positives = 209/362 (57%), Gaps = 15/362 (4%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           G  L   Y  +++ K D L+     F    ++IF+S+  ++R  AEF IWH+  D+++ M
Sbjct: 11  GCNLNLPYNDEISFKTDFLKSEFKEFYQGEIEIFKSDEWNFRNHAEFGIWHEKGDVFYTM 70

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
               + ER++I+        I  +M +++  +R    L+ +LF I+++ ++ D  +  L+
Sbjct: 71  RG-NSNERVKIETCPKMDKKIVEMMPKLLQNLRENKNLKERLFGIEFIATKFD-FMAILL 128

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           YH+ +    ++   +L + L      I++  R+    +    ++  E L    +  IYR 
Sbjct: 129 YHKDIF-NIKDDLAKLAEIL-----DIKISARSRGKFL----NFGGEILREKVQNFIYRF 178

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             ++F Q N  +N  M+ +VL A K  + DLLE+YCG+GNF+L LA  F ++LA EI+K 
Sbjct: 179 NADAFFQSNTKVNEKMILFVLNAVKNGK-DLLEMYCGHGNFTLPLASEFGKILANEISKN 237

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           S++ AR N    + +N+  VRMS+KE   A    REFNRLKDIDI  + F  + VDPPR+
Sbjct: 238 SIKNARENSK--NKDNINFVRMSAKELIDAFNGVREFNRLKDIDITDFDFSHVLVDPPRA 295

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           G++   +  +Q + +I+YISCNP SL ++L IL  TH I + ALFDQF +T H+ECGV+L
Sbjct: 296 GIEPEVLDFIQNFKNIIYISCNPASLKQNLQILCETHKITKFALFDQFVHTEHIECGVVL 355

Query: 363 VR 364
            +
Sbjct: 356 QK 357


>gi|160893502|ref|ZP_02074287.1| hypothetical protein CLOL250_01053 [Clostridium sp. L2-50]
 gi|156864897|gb|EDO58328.1| hypothetical protein CLOL250_01053 [Clostridium sp. L2-50]
          Length = 483

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 157/389 (40%), Gaps = 39/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
             +L    YE+QL  K +++R+ +           +        EP HYR +A+F +  D
Sbjct: 107 GCSLQHISYEKQLEYKWNKVRECLRRIGKIENPDTLMEPIYGMKEPYHYRNKAQFPVGRD 166

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRA 102
            +       +  +T   +  D    G+ + + ++  + A +             + L+R 
Sbjct: 167 KNGNIVIGFYAGRTHSIIDSDTCAIGAEVNDQILPIIRAFLTEYNISTYNETTGQGLVRH 226

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANKTK 159
            L ++ + T +    ++         D       ++            +          K
Sbjct: 227 ILTRVGFTTGEVMVCLIVNGKKLPHADELISRLTKISGMTSICLNINTEKTNKILGPTCK 286

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
                 Y+ + +      + YR    SF Q N      + E  L  A    +  + ++YC
Sbjct: 287 TLWGSPYITDYIG----NVKYRISPLSFYQVNPVQTKVLYEKALEYADLNGEETVWDMYC 342

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++  AR N   N ++NV+     ++E   A+     
Sbjct: 343 GIGTISLFLAQKAKQVYGVEIVPQAILDARKNAELNDIHNVEFFTGKAEEVVPAIY---- 398

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS 336
                +          + VDPPR G D   +  +++  P  ++Y+SC+P +L RD++IL+
Sbjct: 399 -----EKGGDGSHADVVVVDPPRKGCDKVLLDTLIRMNPKRLVYVSCDPATLARDIAILT 453

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVR 364
              + +E++A+ DQF +T H+E  VLL R
Sbjct: 454 PAGYHLEKVAVVDQFGHTGHVESVVLLSR 482


>gi|238925258|ref|YP_002938775.1| hypothetical RNA methyltransferase-like protein [Eubacterium
           rectale ATCC 33656]
 gi|238876934|gb|ACR76641.1| hypothetical RNA methyltransferase-like protein [Eubacterium
           rectale ATCC 33656]
          Length = 493

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 94/412 (22%), Positives = 161/412 (39%), Gaps = 49/412 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52
              +    YE+QL  K +++R  ++                 +    P  YR +A+F + 
Sbjct: 79  GCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGTDNPYRYRNKAQFPVG 138

Query: 53  HDGDDLYH-IMFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLEP--------LL 100
           +D D       +  ++   + ++     +P +  I  ++ E M    + P        L+
Sbjct: 139 YDRDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLV 198

Query: 101 RAKLFQIDYLTSQSDQAIV----TLIYHRLLDDAWRECAIRLR--DALHARKYQIQ---- 150
           R  L +  + + Q    +V    +L   R   +A      RL   D + +  Y I     
Sbjct: 199 RHVLIRYGFTSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMTSISYNINKENT 258

Query: 151 LIGRANKTKICLDRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
            +    KT     R Y+++ +        T  G  + Y+    SF Q N      +    
Sbjct: 259 NVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTA 318

Query: 203 LA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           LA A      ++ +LYCG G  SL L++   +V  VEI   ++E A+ N   N + N + 
Sbjct: 319 LAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNNAKLNGITNAQF 378

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSY------RFKTIFVDPPRSGLDDATVGMVQAY 315
               +++         +       D  S       R   I VDPPR G D+  +  + A 
Sbjct: 379 FVGKAEDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGCDEKCLDTMLAM 438

Query: 316 --PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
               I+Y+SC+  +L RDL IL    + + +   FDQF +T H+E   LL R
Sbjct: 439 SPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490


>gi|229056263|ref|ZP_04195684.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
 gi|228721068|gb|EEL72606.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
          Length = 459

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 161/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNDSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + + K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKDQFIAEIQKQMPSVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
               E +      L +     +F Q N    V + +    A   I  + +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALIGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++E A+ N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVETLMESYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|282849051|ref|ZP_06258440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella parvula
           ATCC 17745]
 gi|282581326|gb|EFB86720.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella parvula
           ATCC 17745]
          Length = 505

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 142/383 (37%), Gaps = 34/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL+ K  +++ ++      N ++        +P  YR + +  +     
Sbjct: 132 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPELVKPALGPKDPWAYRNKMQMPVGGTKG 191

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLL----RAKLFQIDY 109
           D+    +   + + ++             I     ++     +EP      +  L  +  
Sbjct: 192 DILMGFYAMGSHDIVQGTNCPIQDEGNNSIAQACYQIAKEFDIEPYNEHTGKGILRHVIG 251

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165
              QS   +V L+          +    L + +   +  +  +    +T + L       
Sbjct: 252 RIGQSG-WMVILVTATDNLPHQEKWVKNLTERVPQVETIVHNVN-GKRTNVILGPKNRIL 309

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           Y D  +T   + L +    +SF Q N      + +  L  A    +  +++ YCG G  S
Sbjct: 310 YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALKYANLKGEETVIDAYCGTGTIS 369

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA     V+ +EI +P++  AR N   N  +N + +   +               +  
Sbjct: 370 LFLAHKAKHVIGIEIVEPAINNARENARRNGYDNTEFIVADAA------------VEMPK 417

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTI 341
           +     R   I  DP R+G  +  +          I+Y+SCNP ++ RD+ IL+   + +
Sbjct: 418 LYKAGVRPDVIVFDPIRAGCKEEVLTSAAGMEPKRIVYVSCNPATMARDIEILTHYGYEL 477

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           E +   D FP T H+E   LL R
Sbjct: 478 EEVQPVDMFPMTAHVEAVALLTR 500


>gi|229165425|ref|ZP_04293209.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
 gi|228618023|gb|EEK75064.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
          Length = 459

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 160/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNDSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + + K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKDQFIAEVQKQMPSVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++E A+ N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVETLMESYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|163938416|ref|YP_001643300.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|229009910|ref|ZP_04167129.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
 gi|229131423|ref|ZP_04260319.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|163860613|gb|ABY41672.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis
           KBAB4]
 gi|228652007|gb|EEL07948.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|228751341|gb|EEM01148.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
          Length = 459

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 160/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + + K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKDQFIAEVQKQMPSVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++E A+ N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNAKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVETLMESYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|157691441|ref|YP_001485903.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|157680199|gb|ABV61343.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
          Length = 465

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 152/390 (38%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              +    YE QL  K  +++ ++      +         +   +P +YR +A+  +   
Sbjct: 86  GCQIQHMSYEGQLLFKQKQVKDVLERIGKLDMSRVKVHPVLGMEDPWNYRNKAQVPVGER 145

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              L    + Q+T E + ++  +               +  A  I+     R +  LR  
Sbjct: 146 EGGLVAGFYQQRTHEIIDMEKCLIQQSENDEVVQAVKEICQAFGIKAYNEERHKGWLRHV 205

Query: 104 LFQIDYLTSQSDQAIVTLI----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           + +    T +     VT        + + +        +R  +     +   +   ++T 
Sbjct: 206 MVRYGIATGEMMVVFVTRTAEFPQKQQVIEQIIARFPHIRSIVQNVNSKKTNVIFGDETT 265

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +    +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YC
Sbjct: 266 VLWGEEYIYDTIG----DIKFAISARSFYQVNPAQTKMLYDKALEYAELQGEETVIDAYC 321

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   RV  VEI   ++E A+ N A N +NNV+     ++       +E  
Sbjct: 322 GIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNGINNVEFAVGEAETVIPNWYKE-- 379

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                       +  T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL IL 
Sbjct: 380 ----------GIKADTLVVDPPRKGCDEALLDTILKMKPKRVVYVSCNPGTLARDLRILE 429

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365
              +  E +   D FP+T H+EC   L+ +
Sbjct: 430 DGGYVTEEVQPVDMFPHTSHVECVAQLILR 459


>gi|148926533|ref|ZP_01810215.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845227|gb|EDK22321.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 380

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 133/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD + K++  I
Sbjct: 35  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 94

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + + VTL+YH+ ++D  + 
Sbjct: 95  EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIED-IKS 152

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L + GR + Y    + F QPN  
Sbjct: 153 NLENLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 207

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV        + DLLELYCG GNF+L LA  F ++LA EI+K ++  A  N  
Sbjct: 208 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 267

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 268 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 327

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH  E  ALFDQF  T H+ECGV L +
Sbjct: 328 KKYENIIYISCNPITLKENLKELSLTHRAEEFALFDQFVNTPHLECGVFLSK 379


>gi|269797777|ref|YP_003311677.1| RNA methyltransferase, TrmA family [Veillonella parvula DSM 2008]
 gi|269094406|gb|ACZ24397.1| RNA methyltransferase, TrmA family [Veillonella parvula DSM 2008]
          Length = 457

 Score =  298 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 147/390 (37%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL+ K  +++ ++         +    +    P  YR + +  +     
Sbjct: 84  GCQLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRNKMQMPVGGTKG 143

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPL--------LRAKLF 105
           D+    +   + + ++            +I     ++     +EP         LR  + 
Sbjct: 144 DIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDEHTGKGVLRHVIG 203

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +I    S     +VT   H    + W E   +L + +   +  +  +    +T + L   
Sbjct: 204 RIGQ--SGWMIILVTATEHLPHQEKWVE---KLTERVPQVETIVHNVN-GKRTNVILGPK 257

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               Y D  +T   + L +    +SF Q N      + +  LA       + +++ YCG 
Sbjct: 258 NSVLYGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTEIVIDAYCGT 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA     V+ +EI +P++  AR N   N  +N + +   +              
Sbjct: 318 GTISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFIVADAA------------V 365

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337
            +  +     R   I  DP R+G  +  +    +     I+Y+SCNP ++ RD+ IL+  
Sbjct: 366 EIPKLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHY 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            + ++ +   D FP T H+E   LL R  +
Sbjct: 426 GYELKEVQPVDMFPMTAHVEAVALLTRSKA 455


>gi|304406301|ref|ZP_07387958.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus
           YK9]
 gi|304344885|gb|EFM10722.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus
           YK9]
          Length = 513

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 143/401 (35%), Gaps = 57/401 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--------VPNLQIFRSEPIHYRMRAEFHIW- 52
              L    YE QL  K   +   +            + +  I   EP  YR +A+  I  
Sbjct: 127 GCQLQHMSYEAQLRWKRQHVVDNLTRIGKLNVDVDIIVHPTIGMDEPWRYRNKAQVPIGM 186

Query: 53  -------HDGDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEP 98
                       L    + Q +   + +D  +            I  +  E+  T   E 
Sbjct: 187 ALADIEDGAAGGLIGGFYAQGSHRIIDMDACLIQHERNDEVVRQIKRIGTELGITAYDEE 246

Query: 99  ----LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG- 153
               LLR  + +  ++T +    +VT   H      W      +R AL      +Q +  
Sbjct: 247 SGRGLLRHVVVRTGFVTGELMVVLVTNGTHIPNKTEWIAG---IRAALPDVNSIVQNVNT 303

Query: 154 ------RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
                   ++T+     D + + L      + +     SF Q N    V +    +    
Sbjct: 304 RDTNVIFGDETRTLWGSDVIYDEL----DGIRFAISARSFYQVNPSQTVALYRKAVDYAG 359

Query: 208 GIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               + +++ YCG G  SL LAR   RV  VE+   ++E A+ N   N + N +     S
Sbjct: 360 LTGAETVIDAYCGIGTISLFLARKAGRVYGVEVVPEAIEDAKRNAELNGIANAEFEAGLS 419

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCN 324
           +      R E                  I VDPPR G D A +  +       ++Y+SCN
Sbjct: 420 EVVIPRWREE------------GIAADVIVVDPPRKGCDAALLDTIIRMKPERVVYVSCN 467

Query: 325 PDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           P +L RDL +L    +    +   D FP+T H+E   LLV+
Sbjct: 468 PSTLARDLRVLEDGGYRTVEVTPVDMFPWTVHVENVALLVK 508


>gi|228913060|ref|ZP_04076699.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228846465|gb|EEM91478.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 459

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 151/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +  + +   D FP+T H+EC  LL  K
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVTLLELK 458


>gi|315303628|ref|ZP_07874164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
           F6-596]
 gi|313628001|gb|EFR96598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
           F6-596]
          Length = 453

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 148/383 (38%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    YE QL  K +++ + M      ++Q+        P  YR +++  +      
Sbjct: 84  GCSLQHLSYEGQLKFKRNQVEETMKRIGNLDVQVKETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++ E + +   +               ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHEIIDMTTCLIHNEQGDYAVQKAREILAKYGTEPYNEKTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
           + + T Q    +VT        +         + L   +     Q   +   N+TK    
Sbjct: 204 VAHTTGQLMLVLVTNKDKIPFKEDIIRDLTEQLALTSIVQNINPQKTNVIFGNRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  L AA    +  +++ YCG G+
Sbjct: 264 KDIIEDSIH----GIRFAISARSFYQVNPLQTEVLYQQALEAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N A N +NN       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAALNELNNTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL    +
Sbjct: 374 ------GIIADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDMQILTEGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 EAKQVQPVDMFPMTTHIEAVTVL 450


>gi|229171271|ref|ZP_04298861.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
 gi|228612228|gb|EEK69460.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
          Length = 459

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 160/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKDQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGDEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++E AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|295702483|ref|YP_003595558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
           DSM 319]
 gi|294800142|gb|ADF37208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
           DSM 319]
          Length = 457

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 153/388 (39%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  +++ +M     +P++ +      ++P  YR +A+  +     
Sbjct: 86  GCQLQHVSYEGQLQFKQKQVKDVMARIGHLPDVPVHSTLGMNDPWRYRNKAQVPVAEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L    + Q++ + + +D  +      + ++  + +      +           LR  + 
Sbjct: 146 GLVAGFYQQRSHDIINMDACLIQQQANDDVVQAVKSICEKHGVSAYQEQKHKGSLRHIMA 205

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +    IVT    L   + + +   E    ++  +     +   +   N+T + 
Sbjct: 206 RYGLVTGEIMVVIVTRTAELPNKKRIIEDIIEAVPNVKSIVQNVNSKRTNVILGNQTNVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YCG 
Sbjct: 266 WGEEYIYDYIG----DVKFAISAKSFYQVNPEQTKVLYDKALEYADLTGEETVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VEI   ++E A+ N   N ++N +     ++       +     
Sbjct: 322 GTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNAEFEVGEAEVVIPNWYK----- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                     +   I VDPPR G D+A +  +       ++Y+SC P +L RDL+IL   
Sbjct: 377 -------QGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLARDLAILEKG 429

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +    +   D FP+T H+E   +L  K
Sbjct: 430 GYETVEVQPVDMFPHTTHVENVAVLTLK 457


>gi|313898104|ref|ZP_07831643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
 gi|312957132|gb|EFR38761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
          Length = 444

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 153/380 (40%), Gaps = 30/380 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPI-HYRMRAEFHIWHDGD 56
              L    Y +QL  K  +++ +M      ++++       +   +YR + +  +  +  
Sbjct: 79  GCQLQHMSYAEQLRFKKQKVQDVMQRIAHLDIEVWDVLGMQDCYTNYRNKGQIPVGVEKG 138

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYLTSQ 113
                 +   +   +  D  +  S  INA++ E   +    +   L R  L +  +    
Sbjct: 139 KTVTGFYRINSNAIIDTDTCLIQSERINAVLQEMRKLFEKYQNAKLFRHLLIKHAF---S 195

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDER 170
           SD+ +V  I         +E    L  AL   K  I  +   +   I  D++   + +  
Sbjct: 196 SDEVMVVWIVRSFQIPHGKEMVQELTAALPFVKSVILNLNVRDDNVILGDKEQLLFGERA 255

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR 229
           +T +   L +     SF Q N      +    L  A    +  +L+LYCG G  S+ LA+
Sbjct: 256 ITDSIHDLKFSISSKSFYQVNPRQTEILYGKALEFAKLTGKETVLDLYCGVGTISMFLAQ 315

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V  +EI   ++  AR N A N + N++ V   + ++ + +                
Sbjct: 316 RAKHVTGIEIVPQAIRDARKNAALNGIANIEFVCSDAADYAKKLCE------------QG 363

Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THTIERLAL 346
                I VDPPR G D  T+  MV   P  I+Y+SC+P +L RDL +L    +  E +  
Sbjct: 364 AHPDVIVVDPPRKGCDAQTIDSMVMMQPKRIVYVSCDPGTLARDLKLLEEKGYRTEIVQP 423

Query: 347 FDQFPYTRHMECGVLLVRKP 366
            D FP+T H+E   LL RK 
Sbjct: 424 LDMFPFTHHVETVCLLSRKD 443


>gi|229015810|ref|ZP_04172786.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
 gi|229022017|ref|ZP_04178573.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
 gi|228739273|gb|EEL89713.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
 gi|228745469|gb|EEL95495.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
          Length = 459

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 161/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++E A+ N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD++ L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVNALMQSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|52079174|ref|YP_077965.1| putative RNA methyltransferase YefA [Bacillus licheniformis ATCC
           14580]
 gi|52784541|ref|YP_090370.1| YefA [Bacillus licheniformis ATCC 14580]
 gi|52002385|gb|AAU22327.1| putative RNA methyltransferase YefA [Bacillus licheniformis ATCC
           14580]
 gi|52347043|gb|AAU39677.1| YefA [Bacillus licheniformis ATCC 14580]
          Length = 462

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 75/392 (19%), Positives = 148/392 (37%), Gaps = 42/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K  +++ ++             +  +   +P +YR +A+  +   
Sbjct: 85  GCQLQHINYEGQLLYKQKQVKDVLERIGKLDLSRITVHPTLGMEDPWNYRNKAQVPVGER 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              L    + Q++ E + ++  +               +     I+     R +  LR  
Sbjct: 145 EGGLIAGFYQQRSHEIIDMNECLIQQSENDRVVQAIKEICGKYGIKAYNEERHKGWLRHI 204

Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           + +   +T +     +T      H+  + +        ++  +     +   +   ++T 
Sbjct: 205 MVRYGAVTGEMMVVFITRTNDFPHKAKIVEEITAAFPHVKSIVQNINPKKTNVIFGDETT 264

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +    +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YC
Sbjct: 265 VIWGEEYIYDTIG----GIKFAISARSFYQVNPEQTKVLYDKALEYAELNGEETVIDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++        E  
Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAEFEVGEAEVVIPKWYEE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                          T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L 
Sbjct: 379 ----------GIAADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLARDLRVLE 428

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              +    +   D FP+T H+EC   LV K +
Sbjct: 429 DGGYVTREVQPVDMFPHTSHVECVTKLVLKGA 460


>gi|194016025|ref|ZP_03054640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
           7061]
 gi|194012380|gb|EDW21947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
           7061]
          Length = 460

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 152/388 (39%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              +    YE QL  K  +++ ++      +         +   +P +YR +A+  I   
Sbjct: 86  GCQIQHMSYEGQLLFKQKQVKDVLERIGKLDMSRVKVHPVLGMEDPWNYRNKAQVPIGER 145

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              L    + Q+T E + ++  +               + NA  I+     R +  LR  
Sbjct: 146 EGGLVAGFYQQRTHEIIDMEKCLIQQSENDEVVQAVKDICNAFGIKAYNEERHKGWLRHV 205

Query: 104 LFQIDYLTSQSDQAIVTLI----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           + +    T +     VT        + + +        +R  +     +   +   ++T 
Sbjct: 206 MVRYGIATGEMMVVFVTRTADFPQKQQVIEQIIARFPHVRSIVQNVNSKKTNVIFGDETT 265

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           +    +Y+ + +      + +     SF Q N      + +  L   +    + +++ YC
Sbjct: 266 VLWGEEYIYDTIG----DIKFAISARSFYQVNPAQTKVLYDKALEYAELQGEEIVIDAYC 321

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   RV  VEI   ++E A+ N A N +NNV+     ++       +E  
Sbjct: 322 GIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNEINNVEFAVGEAETVIPNWYKE-- 379

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                       +  T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL IL 
Sbjct: 380 ----------GIKADTLVVDPPRKGCDEALLDTILKMKPKRVVYVSCNPGTLARDLRILE 429

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLV 363
              +  E +   D FP+T H+EC   LV
Sbjct: 430 DGGYVTEEVQPVDMFPHTAHVECVASLV 457


>gi|225174261|ref|ZP_03728260.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT
           1]
 gi|225170046|gb|EEG78841.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT
           1]
          Length = 455

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 154/390 (39%), Gaps = 45/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L   QYE+QL  K + +   +      ++ +       +P  YR +A+  +  +   
Sbjct: 85  GCQLQHLQYEEQLKLKQNIVSDTLKRIGGIDIPVLATMGMQDPWRYRNKAQVPVGLENGT 144

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +    +++++   + +                   ++  L + +      + L+R  L +
Sbjct: 145 VRAGFYEKRSHNIIDLKCCHIQHPANDNVVHTVRNILQQLSVPVYREREHKGLVRHILAR 204

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTK 159
             + T +   AIVT    R L    +E   +L+D++      +Q I          N+  
Sbjct: 205 TSFTTEEVLVAIVTN--GRQL-PKKQEVVQQLKDSIPNLCGIVQNINTRKGNTILGNEEL 261

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
             L R ++ E+L      L +     SF Q N      +    L  A       + +LYC
Sbjct: 262 TLLGRPWLREKLG----NLHFHVSARSFFQVNPLQTEVLYNKALEYANLSGTETVFDLYC 317

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LAR   +V+ VE  + +V  AR N   N++ N +    +++     + +   
Sbjct: 318 GIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEFHTGTAETVVPRLFK--- 374

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      Y    + VDPPR G D+  +  + A     I+Y+SCNP +L RDL  L 
Sbjct: 375 ---------QGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLARDLKYLQ 425

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365
              +        D FP+T H+E  VLL RK
Sbjct: 426 QNGYNPIEAQPVDMFPHTSHVETVVLLERK 455


>gi|309777091|ref|ZP_07672057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915161|gb|EFP60935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 441

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 154/378 (40%), Gaps = 29/378 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L    Y +QL  K  +++ ++      ++++       E  HYR + +  +  D   
Sbjct: 79  GCQLQHMSYGEQLRFKKQKVQDVIQRIAHLDVEVQDVLGMQEYTHYRNKGQIPVGMDKGK 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYLTSQS 114
                +   +   +  D  +  S  IN ++ E   ++ T     + R  L +  +    S
Sbjct: 139 TVTGFYRINSNSIIDTDTCLIQSERINEVLQEMRRLLQTYNNAKVFRHLLIKHAF---SS 195

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERL 171
           D+ +V  I H       +E    L +AL   K  I  + +     I  +++   Y +  +
Sbjct: 196 DEVMVVWIVHSFQIPHEKEMVRELSEALPFVKSIIVNLNQRTDNVILGEKEKLLYGERVI 255

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230
             +   L +     SF Q N      +    L  A    +  +L+LYCG G  S+ LA+ 
Sbjct: 256 VDSIHDLKFSISSKSFYQVNPKQTEVLYGKALEFAQLTGKETVLDLYCGVGTISMFLAQQ 315

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V  +EI   +++ AR N A N + N++ V   +  + + +                 
Sbjct: 316 ARHVTGIEIVPQAIQDARKNAALNGIANIEFVCSDAASYAKKLCE------------QGM 363

Query: 291 RFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALF 347
               I VDPPR G D   +  MV   P  I+Y+SC+P +L RDL +L    +  E +   
Sbjct: 364 HLDVIVVDPPRKGCDAEAIESMVMMQPKRIVYVSCDPGTLARDLKLLKEKGYHTEIVQPV 423

Query: 348 DQFPYTRHMECGVLLVRK 365
           + FP+T H+E  VLL RK
Sbjct: 424 EMFPFTHHVETVVLLCRK 441


>gi|303231827|ref|ZP_07318541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513505|gb|EFL55533.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 487

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 149/389 (38%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL+ K  +++ ++         +    +   EP  YR + +  +     
Sbjct: 114 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPDLVKPALGPKEPWAYRNKMQMPVGGARG 173

Query: 57  DLYHIMFDQQTKERMRIDYFMP---GSLLINALMIEMMATIRLEPL--------LRAKLF 105
           D+    +   + + ++         G+  I  +  ++   + +EP         LR  + 
Sbjct: 174 DIQMGFYAMGSHDIVQGTNCPIQDDGNNRIAQICYDIAKELDVEPYDEHTGKGVLRHVIG 233

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +I    S     +VT   H    + W E   R+ + +   +  +  +       I    +
Sbjct: 234 RIGQ--SGWMVILVTATEHLPHQEEWVE---RITNRIPQVETIVHNVNSKRTNVILGPTN 288

Query: 166 YV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
           YV   D  +T   + L +    +SF Q N      + +  LA       + +++ YCG G
Sbjct: 289 YVLYGDGTITDHIKDLQFTLSPHSFFQVNPEQTTVLYDQALAYADLKGNEIVIDAYCGTG 348

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA     V+ +EI +P++  AR N   N  +N + +   +               
Sbjct: 349 TISLFLAHKAKHVIGIEIVEPAIINARENARNNGYDNTEFIVADAA------------VE 396

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338
           +  +     R   I  DP R+G  +  +          I+Y+SCNP ++ RD+ IL+   
Sbjct: 397 MPKLYKAGVRPDVIVFDPIRAGCKEEVLTSAAGMEPKRIVYVSCNPATMARDIEILTHYG 456

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           + ++ +   D FP T H+E   LL R  +
Sbjct: 457 YELKEVQPVDMFPMTAHVEAVALLTRSEA 485


>gi|118443042|ref|YP_877382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
 gi|118133498|gb|ABK60542.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
          Length = 472

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 159/404 (39%), Gaps = 56/404 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---------------------FRSEP 40
             ++    Y+ QL  K +R++  +       + I                         P
Sbjct: 85  GCSIQHFNYKSQLEFKKNRVKDCLERIGKLEVSINNEETGNGCDENKGIILHDTLGMKNP 144

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLE 97
             YR + +  +  +  ++    +  ++ + + +D       +   I +L+ + M T  ++
Sbjct: 145 YRYRNKVQLPVGEENGEIKVGFYAPRSHDIIDMDICHIQDEVGDTIVSLIKQWMKTYNIK 204

Query: 98  P--------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           P        ++R  + +  + T++    +VT        +   E  ++  D + +    I
Sbjct: 205 PYNEEKNTGIVRHIMVRRGFNTNEVMIVLVTRTNELPHKEELVELILKKIDGITSIVQNI 264

Query: 150 QLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
                + KT + L  +    Y  + ++       +     SF Q N      +    L  
Sbjct: 265 N----SKKTNVILGLENITLYGKDYISDYIGEFKFNISPLSFFQVNPIQTEVLYNKALEY 320

Query: 206 TKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                 +++ + YCG G  SL L+++  +V  VEI   ++E A+ N   N+V+N + +  
Sbjct: 321 AALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVDAAIENAKINAKENNVDNAEFIVG 380

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
            S+E             + ++     +   + VDPPR G D A +  +       I+Y+S
Sbjct: 381 KSEEV------------IPNLINQGIKADVVVVDPPRKGCDKALLDAIGNMKPDRIVYVS 428

Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           C+P +L RDL+IL    +  + +   D FP T H+EC V L RK
Sbjct: 429 CDPGTLARDLAILGELGYATKEVQPVDMFPQTGHVECVVKLERK 472


>gi|254520598|ref|ZP_05132654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
           7_2_43FAA]
 gi|226914347|gb|EEH99548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
           7_2_43FAA]
          Length = 454

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 158/392 (40%), Gaps = 45/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             ++    Y++QL  K +R++  +         + N  I    P  YR + +  +     
Sbjct: 80  GCSIQHMNYKKQLDYKYERVKDCIYKIGGLSQDIVNYPIGMDTPERYRNKVQLPVGMVKG 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102
            L    +  ++ + + +D  +    +   +  +  E M    + P           L+R 
Sbjct: 140 KLSIGFYAPRSHDIIDLDTCLIQDNIADEVTRIAREWMEKYNISPASIDGKFNPQGLVRH 199

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +  +   ++++ +V L+  +       +    +++ ++  K  IQ +  A+ T + L
Sbjct: 200 IMIRRGF---KTNEVMVVLVTTKNNVRHINDFVELIKENVNGIKSIIQNVNEAD-TNVIL 255

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
                  + ++ +T       +     SF Q N      +    L    G+ G+  + + 
Sbjct: 256 GEKCITLWGEDTITDYIDEFKFNISPLSFFQVNPKQTEVLYSKALE-YAGLTGEEVVFDA 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  +L L++   +V  VEI K +++ A  N   N+V N +     S+E        
Sbjct: 315 YCGTGTITLFLSQKAKKVYGVEIIKAAIDNANENAKINNVKNAEFFVGKSEEI------- 367

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334
                + D+       + I VDPPR G D   +  +       ++Y+SC+P +L RDL I
Sbjct: 368 -----IPDLIDKGIIPEVIVVDPPRKGCDIKLLEAIGDAKPNRVVYVSCDPSTLARDLKI 422

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           L    +   ++   D FP+T H+EC  LL  K
Sbjct: 423 LEEKGYKTAKVQPVDMFPHTSHVECVALLKNK 454


>gi|229083730|ref|ZP_04216051.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
 gi|228699588|gb|EEL52252.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
          Length = 458

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 158/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   N++      +    P HYR +++  +    
Sbjct: 87  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNGNVEADIRPTLGMGNPWHYRNKSQLQVGRKD 146

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 147 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNISIYNEKKQKGLVRTIV 206

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
              + Q+ +  VTLI  +       +    ++  +   K  +Q +     + I  D+ + 
Sbjct: 207 TRAAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPTVKSIMQNVNWRKTSVIFGDKTFN 266

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 267 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGTEKIVDAYCGVGTI 326

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++E A+ N   +   N K     ++++     +E       
Sbjct: 327 GLWLANDAAEVRGMDVIPEAIEDAKKNARRHGFTNTKYEAGKAEQWLPKWVKE------- 379

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 380 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVKALMKSYEV 434

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 435 EYVQPVDMFPHTAHVENVVKLVRK 458


>gi|228989496|ref|ZP_04149481.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
           12442]
 gi|228770221|gb|EEM18800.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
           12442]
          Length = 465

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLHDVPVHPVLGMENPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L    + Q T + + ++  +  +   +AL+ E+        +           LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMETCLIQAEENDALIQEVKRICEKHGITAYNEERHKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   + T + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEITAKFPNVKSIVQNVNTKRTNVIFGDTTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKALEYAKLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFAVGEAEVVIPNWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        TI VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLE 463


>gi|229028277|ref|ZP_04184413.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
 gi|228733041|gb|EEL83887.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
          Length = 459

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + + K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPSVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGDEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|229159573|ref|ZP_04287587.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
 gi|228623875|gb|EEK80687.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
          Length = 459

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEERIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|291524456|emb|CBK90043.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale DSM
           17629]
          Length = 493

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 94/412 (22%), Positives = 160/412 (38%), Gaps = 49/412 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52
              +    YE+QL  K +++R  ++                 +    P  YR +A+F + 
Sbjct: 79  GCQIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGADNPYRYRNKAQFPVG 138

Query: 53  HDGDDLYH-IMFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLEP--------LL 100
           +D D       +  ++   + +D     +P +  I  ++ E M    + P        L+
Sbjct: 139 YDRDGNIVTGFYASRSHNIIPVDDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLV 198

Query: 101 RAKLFQIDYLTSQSDQAIV----TLIYHRLLDDAWRECAIRLR--DALHARKYQIQ---- 150
           R  L +  + + Q    +V    +L       +A      RL   D + +  Y I     
Sbjct: 199 RHVLIRYGFTSKQIMVCLVINGDSLEAKCRAGNAADILCERLSKIDGMTSISYNINKENT 258

Query: 151 LIGRANKTKICLDRDYVDERL--------TVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
            +    KT     R Y+++ +        T  G  + Y+    SF Q N      +    
Sbjct: 259 NVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYSTA 318

Query: 203 LA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           LA A      ++ +LYCG G  SL L++   +V  VEI   +++ A+ N   N + N + 
Sbjct: 319 LAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIKDAKNNAKLNGITNAQF 378

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSY------RFKTIFVDPPRSGLDDATVGMVQAY 315
               ++E         +       D  S       R   I VDPPR G D+  +  + A 
Sbjct: 379 FVGKAEEVLPQFYENAKKTEKITDDKASTGRTDMLRPDVIVVDPPRKGCDEKCLDTMLAM 438

Query: 316 --PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
               I+Y+SC+  +L RDL IL    + + +   FDQF +T H+E   LL R
Sbjct: 439 LPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490


>gi|294497118|ref|YP_003560818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
           B1551]
 gi|294347055|gb|ADE67384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
           B1551]
          Length = 457

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 153/388 (39%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  +++ +M     +P++ +      ++P  YR +A+  +     
Sbjct: 86  GCQLQHVSYEGQLQFKQKQVKDVMARIGHLPDVPVHSTLGMNDPWRYRNKAQVPVAEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L    + Q++ + + +D  +      + ++  + +      +           LR  + 
Sbjct: 146 GLVAGFYQQRSHDIINMDACLIQQQANDDVVQAVRSICEKHDVSAYQEQKHKGSLRHIMA 205

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +    IVT    L   + + +   E    ++  +     +   +   N+T + 
Sbjct: 206 RYGLVTGEIMVVIVTRTAELPNKKRIIEDIIEAVPNVKSIVQNVNSKRTNVILGNQTNVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YCG 
Sbjct: 266 WGEEYIYDYIG----DVKFAISAKSFYQVNPEQTKVLYDKALEYADLTGEETVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VEI   ++E A+ N   N ++N +     ++       +     
Sbjct: 322 GTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNAEFEVGEAEVVIPNWYK----- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                     +   I VDPPR G D+A +  +       ++Y+SC P +L RDL+IL   
Sbjct: 377 -------QGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLARDLAILEKG 429

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +    +   D FP+T H+E   +L  K
Sbjct: 430 GYETVEVQPVDMFPHTTHVENVAVLKLK 457


>gi|228906231|ref|ZP_04070118.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           200]
 gi|228853387|gb|EEM98157.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           200]
          Length = 459

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|228919350|ref|ZP_04082719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228840286|gb|EEM85558.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 459

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +    L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+ +L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQVLMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|206974209|ref|ZP_03235126.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           H3081.97]
 gi|206747449|gb|EDZ58839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           H3081.97]
          Length = 459

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFITEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|228983684|ref|ZP_04143884.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228776036|gb|EEM24402.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 459

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMESPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ + + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKKNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|238019497|ref|ZP_04599923.1| hypothetical protein VEIDISOL_01366 [Veillonella dispar ATCC 17748]
 gi|237864196|gb|EEP65486.1| hypothetical protein VEIDISOL_01366 [Veillonella dispar ATCC 17748]
          Length = 495

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 143/383 (37%), Gaps = 34/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL+ K  +++ ++         +    +   EP  YR + +  +     
Sbjct: 122 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPDLVKPTLGPKEPWAYRNKMQMPVGGTKG 181

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPL----LRAKLFQIDY 109
           D+    +   + + ++            +I     ++     +EP      +  L  I  
Sbjct: 182 DIQMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKAFDIEPYDEHTGKGVLRHIIG 241

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165
              QS   I+ +     L     +   +L + +   +  +  +    +T + L       
Sbjct: 242 RIGQSGWMIILVTATEQL-PHKEKWVEKLIERIPQVETIVHNVN-GKRTNVILGPKNNIL 299

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           Y D  +T   + L +    +SF Q N      + +  LA A       +++ YCG G  S
Sbjct: 300 YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGDETVIDAYCGTGTIS 359

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA     V+ +EI +P++  AR N   N  +N + +   +               +  
Sbjct: 360 LFLAHKAKHVIGIEIVEPAIINARENAQRNGYDNTEFIVADAA------------VEMPK 407

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTI 341
           +     R   I  DP R+G  +  +          I+Y+SCNP ++ RD+ IL+   + +
Sbjct: 408 LYKAGVRPDVIVFDPIRAGCKEEVLTSAAGMEPKRIVYVSCNPATMARDIEILTHYGYEL 467

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   D FP T H+E   LL R
Sbjct: 468 QEVQPVDMFPMTAHVEAVALLTR 490


>gi|47567252|ref|ZP_00237966.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
 gi|228913174|ref|ZP_04076813.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229042327|ref|ZP_04190077.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
 gi|47556095|gb|EAL14432.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
 gi|228726986|gb|EEL78193.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
 gi|228846579|gb|EEM91592.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 459

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|228931916|ref|ZP_04094810.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228827701|gb|EEM73441.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 459

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|210621791|ref|ZP_03292820.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275]
 gi|210154555|gb|EEA85561.1| hypothetical protein CLOHIR_00765 [Clostridium hiranonis DSM 13275]
          Length = 456

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 153/389 (39%), Gaps = 41/389 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG 55
            G  + +  Y +QL  K + ++Q++              I    P  YR +A+F +    
Sbjct: 84  GGCQIQELDYNKQLELKTNEVKQVISRIGKIEGATIHDTIGMETPFRYRNKAQFPVQMRK 143

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
            +     + +++ E +     M    L           I    I +   ++ + LLR  +
Sbjct: 144 GEPVIGFYKKKSHEVIPTAKCMIQHELNDEIIEVVREFIVENNISVYDEVKHKGLLRHIV 203

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +I + T    + +V L+ +        + A  L + +   K  +  +   NKT + L R
Sbjct: 204 TKIGFTTG---EVMVVLVANGKNIPNVNKLAKMLEERIKGFKTLVVNVNT-NKTNVILGR 259

Query: 165 DY----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           +        ++      L++     SF Q N      +    L  A       + ++YCG
Sbjct: 260 ENKVICGTGKINDYIGNLVFEISPLSFFQVNPVQTEVLYNKALEYANLTGNETVFDIYCG 319

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  +EI + +++ A+ N   N + N +     ++E    M +E   
Sbjct: 320 IGTISLFLAQKAKKVYGIEIVEDAIKDAKRNAELNGLENTEFYAGKAEEVVPKMYKE--- 376

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       ++Y+SCNP +L RDL+ +  
Sbjct: 377 ---------GKKADVVVVDPPRKGCDEKVLDTIVSMDPERVVYVSCNPSTLARDLAYMDE 427

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365
                  +   D FP++ H+E   LL RK
Sbjct: 428 RGFKCVEIQPVDMFPHSVHVENVALLERK 456


>gi|293401235|ref|ZP_06645379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305361|gb|EFE46606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 535

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 151/380 (39%), Gaps = 37/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L    Y++QLA K  +++ ++      ++Q+      ++P HYR + +  +      
Sbjct: 81  GCQLQHMSYKEQLAFKKQKVQDVIERIAKLDVQVEDVLGMAQPDHYRNKGQIPVGVVKGQ 140

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLTSQS 114
           +    +   +   +  D     S  INA++     +        + R  L +  ++T   
Sbjct: 141 VVTGFYRINSNTIIDTDSCGIQSEKINAVLQTMRSLFKKYGNAGVFRHLLIKHAFVTG-- 198

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRANKTKICLDRDYV 167
            + +V  I  +       E    L   +   K  +         +    + ++     ++
Sbjct: 199 -EVMVVWIVRQKKFAHREEMVQELVQTIPEIKSVVLNLNTREDNVILGKQEEVLYGESFI 257

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            + +      L +     SF Q N      +    L        + +++LYCG G  S+ 
Sbjct: 258 TDEI----NGLKFHISAKSFYQVNPVQTKVLYGKALEFCNLKGNEIVIDLYCGVGTISMF 313

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA+   +V+ +EI + +V  AR N A N ++NV+ V   +  + + M             
Sbjct: 314 LAQKAGKVIGIEIVEQAVRDARENAALNGLDNVEFVCSDAAAYAKKMSE----------- 362

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIER 343
               R   + VDPPR G D  T+  +   A   ++Y+SC+P +L RDL IL    + +E 
Sbjct: 363 -QGGRADVVVVDPPRKGCDQVTLDSIVQMAPERLVYVSCDPATLARDLRILEGKGYRVEV 421

Query: 344 LALFDQFPYTRHMECGVLLV 363
           +   D FP T H+E  VLL 
Sbjct: 422 VQPVDMFPGTHHVETVVLLS 441


>gi|126649590|ref|ZP_01721831.1| RNA methyltransferase [Bacillus sp. B14905]
 gi|126593915|gb|EAZ87838.1| RNA methyltransferase [Bacillus sp. B14905]
          Length = 459

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 147/388 (37%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQI-FRSEPIHYRMRAEFHIW-HDGD 56
              L    YE QL  K + +R +M        P L +    EP HYR +A+     ++  
Sbjct: 88  GCQLQHLSYEGQLKWKENMVRNVMQRIGKIDAPVLPVKGMKEPWHYRNKAQIPFSENEAG 147

Query: 57  DLYHIMFDQQTKERMRIDYFMP----GSLLINALMIEMMA-------TIRLEPLLRAKLF 105
                 +  +T   + ++  +        ++  L  E++A        +  E +LR  + 
Sbjct: 148 QAIAGFYKTKTHSIVDMERCLIQTGEADAILAGLKKELVAIGMRPYNELSHEGMLRHVVI 207

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL----RDALHARKYQIQLIGRANKTKIC 161
           +    T +    +VT        +A      +L       +    ++   +   + T   
Sbjct: 208 RKARATGEVMVVLVTKKKKFPQKEAAIAVIQKLVPNVTSIMQNVNHEKTNVIFGDDTLNL 267

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             +D + + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 268 WGKDVIIDTIG----DVRFEISARSFYQVNPEQTEVLYKQALDYANLQGDERVIDAYCGI 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+    V+ VEI   ++E A+ N   N   N       ++E      +E    
Sbjct: 324 GTISLFLAQKAKAVMGVEIVPQAIEDAKRNAVLNGFTNTYFEAGPAEEVIPRWYKE---- 379

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-T 337
                         + VDPPR G D+A +  +  Q    ++Y+SCNP +L RDL IL   
Sbjct: 380 --------GKEADVLVVDPPRKGCDEALLKTILEQRPKRVVYVSCNPATLARDLRILEDG 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +  + +   D FP++ H E    LVRK
Sbjct: 432 GYQTQEIQPVDMFPHSTHCEAVAWLVRK 459


>gi|229154191|ref|ZP_04282314.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|228629281|gb|EEK85985.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
          Length = 459

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYIQPVDMFPHTAHVENVVKLVRK 459


>gi|228950978|ref|ZP_04113099.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229068174|ref|ZP_04201481.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
 gi|229077781|ref|ZP_04210408.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
 gi|229177011|ref|ZP_04304406.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
 gi|229188691|ref|ZP_04315730.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228594880|gb|EEK52660.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228606486|gb|EEK63912.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
 gi|228705509|gb|EEL57868.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
 gi|228714988|gb|EEL66856.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
 gi|228808705|gb|EEM55203.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 459

 Score =  295 bits (756), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGDEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|205356330|ref|ZP_03223095.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|205345715|gb|EDZ32353.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni CG8421]
          Length = 357

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 133/352 (37%), Positives = 206/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD + K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +Y       I A M +++  +R +  L+ KLF +++LT++ + + VTL+YH+ ++D  + 
Sbjct: 72  EYLDFADEKICAFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIED-IKS 129

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L + GR + Y    + F QPN  
Sbjct: 130 NLENLSNNLH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 184

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV        + DLLELYCG GNF+L LA  F ++LA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKILATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTINIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH  E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRAEEFALFDQFVNTPHLECGVFLSK 356


>gi|293375600|ref|ZP_06621874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
           PC909]
 gi|292645817|gb|EFF63853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
           PC909]
          Length = 459

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 137/390 (35%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              +    Y  QL  K D +                  I   EP  YR + +        
Sbjct: 86  GCQVQHLNYPGQLQMKYDTVVNQFKRIGHIEDANILPTIGMEEPWRYRNKTQVPFGLANG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM-----------ATIRLEPLLRAKLF 105
           D+    + +++ E + + + +  + + + ++ EM                   +LR  + 
Sbjct: 146 DVVAGFYQKRSHEIIDMRHCLIQTEISDEIIHEMRGICRDLKLSPYNEESNTGILRHVIV 205

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +  + T +    +VT    +I    +     E   +++         +       KT I 
Sbjct: 206 RTGFKTDEIMVILVTRKEKIINMDRIVSRLLEKFPQIKVIAQNINPNVTNAILGEKTNII 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
               Y+ + +      + +     SF Q N      +    +    G+ G+  + + YCG
Sbjct: 266 YGEGYIYDEM----NGIRFAISPRSFYQVNPVQTETLYSKAVE-FAGLTGEEIVFDAYCG 320

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L LA+H  +V  VEI   ++  A  N   N   N +     S+E   A       
Sbjct: 321 IGTITLFLAQHAKKVYGVEIIPEAIADANMNAKLNGFENTEFAVGKSEEVIPAWIE---- 376

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-S 336
                          I VDPPR G D   +  +   A   I+Y+SC+  +L RD+ IL  
Sbjct: 377 --------QGIVPDVIVVDPPRKGCDKTLLDTMLEAAPKRIVYVSCDSSTLARDVKILVD 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + +E     D FP T H+E   LL RK 
Sbjct: 429 GGYQLEVAQPVDMFPQTSHVEVVALLTRKN 458


>gi|222094222|ref|YP_002528279.1| RNA methyltransferase, trma family [Bacillus cereus Q1]
 gi|221238277|gb|ACM10987.1| RNA methyltransferase, TrmA family [Bacillus cereus Q1]
          Length = 459

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 158/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +    L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKILPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|217958023|ref|YP_002336567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH187]
 gi|229137289|ref|ZP_04265905.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
 gi|217068021|gb|ACJ82271.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH187]
 gi|228646192|gb|EEL02410.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 459

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNSLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFITEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKHHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|256752392|ref|ZP_05493252.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748727|gb|EEU61771.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 453

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 147/387 (37%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGDD 57
             +L    YE QL  K  +++  +          +  I   +P  YR +A+F +      
Sbjct: 82  GCSLQHLSYEGQLKYKTQKVKDNLERIGKVYTRVHDTIGMEKPQRYRNKAQFPVGMVEGK 141

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                +  ++ + + ++  M    +           I    I +      + L+R  + +
Sbjct: 142 AVTGFYAPRSHDIVPVESCMIQHEISDEIARVVRNWIRKYNISVYDEKTGKGLIRHIVTR 201

Query: 107 IDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           + + T +    IV     + Y + L DA +E    L+  +     +   +    +     
Sbjct: 202 VAFKTGEVMAVIVINGKDIPYKKQLIDALKEEIRGLKSVVININTKKTNVIMGEENITIY 261

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
             D + + +    + + +     SF Q N      +    L  A    +  ++++YCG G
Sbjct: 262 GSDNIIDYI----KDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETVIDVYCGIG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL  A+    V  +E    +VE A+ N   N + NV+ +   +++             
Sbjct: 318 TISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDAEKV------------ 365

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TT 338
           + ++     +   + +DPPR G D + +  V       I+Y+SCNP +L RDL  L    
Sbjct: 366 MPELADKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRYLEDNG 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +    +   D FPYT H+E   L+  K
Sbjct: 426 YKTMEVQPVDMFPYTHHVESVCLITNK 452


>gi|228937723|ref|ZP_04100357.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228970603|ref|ZP_04131251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977182|ref|ZP_04137581.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228782491|gb|EEM30670.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228789069|gb|EEM37000.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821931|gb|EEM67925.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326938209|gb|AEA14105.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 459

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGDEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|229148824|ref|ZP_04277072.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
 gi|228634618|gb|EEK91199.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
          Length = 459

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKICPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|42779622|ref|NP_976869.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
 gi|118476178|ref|YP_893329.1| tRNA (uracil-5-)-methyltransferase [Bacillus thuringiensis str. Al
           Hakam]
 gi|196045225|ref|ZP_03112457.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           03BB108]
 gi|225862467|ref|YP_002747845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           03BB102]
 gi|229182811|ref|ZP_04310050.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|229194804|ref|ZP_04321591.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
 gi|51316697|sp|Q73E18|Y542_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0542
 gi|42735538|gb|AAS39477.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987]
 gi|118415403|gb|ABK83822.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
 gi|196023809|gb|EDX62484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           03BB108]
 gi|225790988|gb|ACO31205.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           03BB102]
 gi|228588652|gb|EEK46683.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
 gi|228600691|gb|EEK58272.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
          Length = 459

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 158/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +    L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|229137158|ref|ZP_04265777.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
 gi|228646330|gb|EEL02545.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 459

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLS 456


>gi|49476818|ref|YP_034754.1| tRNA (uracil-5-)-methyltransferase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52144821|ref|YP_082009.1| RNA methyltransferase [Bacillus cereus E33L]
 gi|196034722|ref|ZP_03102130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus W]
 gi|196040108|ref|ZP_03107410.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           NVH0597-99]
 gi|218231359|ref|YP_002365269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus B4264]
 gi|218901630|ref|YP_002449464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH820]
 gi|228925680|ref|ZP_04088767.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228944240|ref|ZP_04106616.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228956903|ref|ZP_04118684.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229120088|ref|ZP_04249340.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
 gi|229143212|ref|ZP_04271644.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|296501251|ref|YP_003662951.1| tRNA(Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
 gi|300119050|ref|ZP_07056761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus SJ1]
 gi|49328374|gb|AAT59020.1| tRNA (uracil-5-)-methyltransferase (RNA methyltransferase, TrmA
           family) [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978290|gb|AAU19840.1| RNA methyltransferase, TrmA family [Bacillus cereus E33L]
 gi|195992765|gb|EDX56725.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus W]
 gi|196028963|gb|EDX67568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
           NVH0597-99]
 gi|218159316|gb|ACK59308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus B4264]
 gi|218538073|gb|ACK90471.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus AH820]
 gi|228640293|gb|EEK96691.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228663326|gb|EEL18914.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
 gi|228802746|gb|EEM49582.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228815391|gb|EEM61636.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228833955|gb|EEM79505.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|296322303|gb|ADH05231.1| tRNA(Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
 gi|298723666|gb|EFI64397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus SJ1]
          Length = 459

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|229089548|ref|ZP_04220815.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
 gi|228693764|gb|EEL47460.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
          Length = 459

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|212638138|ref|YP_002314658.1| methyltransferase [Anoxybacillus flavithermus WK1]
 gi|212559618|gb|ACJ32673.1| Methyltransferase [Anoxybacillus flavithermus WK1]
          Length = 456

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K   +++++           +  +  ++P  YR +A+  +     
Sbjct: 83  GCQLQHLSYEGQLKAKHKHVKEVLARIGKIEDVTVHPVLGMNDPWRYRNKAQVPVGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L    + +++ + + +D  +               +     I        + LLR  + 
Sbjct: 143 GLVAGFYKERSHDIIDMDTCLIQQEMNDIVVQTVKQICEQYNIPAYNEQTHKGLLRHIMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +    T +    ++T    L +   + +A  +    ++  +     +   +    +T++ 
Sbjct: 203 RYGATTKEVMVVLITRTEELPHKNKIVEAIVKRVPNVKSIVQNINPKRTNVIMGEQTRVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + E  L  A    +  +++ YCG 
Sbjct: 263 WGSEYIYDYIG----DIQFAISARSFYQVNPEQTKVLYEKALEYAELTGEETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA++  +V  VE+   ++E A+ N   N + NV+     ++             
Sbjct: 319 GTISLFLAKNAKKVYGVEVVPEAIEDAKRNAELNGMTNVEFAVGEAEVVIPKWYE----- 373

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
                     +   I VDPPR G D++ +  + A     ++Y+SCNP +L RDL IL   
Sbjct: 374 -------QGVKADCIVVDPPRKGCDESLLQTIIAMKPKRVVYVSCNPATLARDLRILEDG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +    +   D FP+T H+EC V L 
Sbjct: 427 GYKTLEVQPVDMFPHTVHVECVVKLE 452


>gi|315282728|ref|ZP_07871069.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
           S4-120]
 gi|313613628|gb|EFR87431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
           S4-120]
          Length = 453

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 144/383 (37%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    YE QL  K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYEGQLEFKRNQVEETMKRIGKLNVEVPAALGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++ E + +   +               ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHEIIDMSTCLIHNEKGDFAVQKAREILAKYGTEPYDEKTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q     VT        D         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMLVFVTTKERLPFKDEIVRDLTEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|317127193|ref|YP_004093475.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
           2522]
 gi|315472141|gb|ADU28744.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
           2522]
          Length = 457

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 139/384 (36%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K   +  ++           +  +   EP  YR +A+     +  
Sbjct: 85  GCQLQHLSYDGQLKHKQKHVMDVLSRIGGMNDVHVHPTLGMEEPWRYRNKAQVPFGEEEG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQIDY 109
            L    + +++ + + +D  M           L+  +  +       E   +  L  +  
Sbjct: 145 GLVAGFYAERSHKIIDMDRCMIQQEENDEVVMLVKDIAKKYGVRGYDEEKHKGTLRHVVT 204

Query: 110 LTSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165
              + + + +V L+         +     +RD+L   K  +Q I       I  D+    
Sbjct: 205 RYGKNTGELMVVLVTKGKELPNKKNIVQDIRDSLPKVKSIVQNINPKRTNVIFGDKTEVL 264

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           + +E +      + +     SF Q N      +    L  A       +++ YCG G  S
Sbjct: 265 WGEEVIYDTIGDIKFAISARSFYQVNPTQTEVLYNKTLEFAGLSGNETVIDAYCGIGTIS 324

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA+    V  VEI   ++  A+ N   N + NV      +++                
Sbjct: 325 LFLAQRAKHVYGVEIVPEAISDAKKNAQLNGIENVDFAVGEAEKVMPWWYA--------- 375

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTI 341
                 R   I VDPPR G D+  +  +       ++Y+SCNP +L RDL  L    +  
Sbjct: 376 ---QGIRADVIVVDPPRKGCDEELLETIVKMKPARVVYVSCNPATLARDLKYLEGRGYKT 432

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           + +   D FP+T H+E   ++ R+
Sbjct: 433 KEVQPVDMFPHTMHVETVTVIYRE 456


>gi|332983359|ref|YP_004464800.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
           BON]
 gi|332701037|gb|AEE97978.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
           BON]
          Length = 456

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 150/387 (38%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDGD 56
              +    Y+ QLA K   ++  +      +       I    P HYR +A+  +     
Sbjct: 83  GCHIQAMAYDAQLAYKTRHVKDALQRIGGFDDVSVLDTIGMERPWHYRNKAQLPVGVFSG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105
                 F   T + + ID        ++A             + +   +  + LLR  + 
Sbjct: 143 RPVMGFFAAGTHDIVDIDTCPIQHPAVDAAIKAVKDYVSSYNVAVYDEMTGKGLLRHIMV 202

Query: 106 QIDYLTSQSDQAIV----TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           ++ + + Q     V    ++ + +   D  R+    L   +     +   +   ++ K+ 
Sbjct: 203 RVGFNSGQVMVVPVINGDSIPHAKEFTDMLRQNIDGLASVVLNINRRRTNVILGSQCKVI 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              D++ + L      L ++    SF Q N      +    +  A       +L+ YCG 
Sbjct: 263 YGNDHIMDTLC----GLTFKISPLSFFQVNPRQTEVLYTKAIEYAGLDGTQTVLDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL+ A+   ++  +E  + +V+ AR N   N ++NV+ +   +++       ++   
Sbjct: 319 GTISLIAAQKAAKIYGIEEIQQAVDDARENARLNDISNVEFICAKAEDAIGRFIEDK--- 375

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS-T 337
                     R   I +DPPR G D   +   V+  P  ++Y+SCNP +L RD+  L+  
Sbjct: 376 ---------VRIDVIIMDPPRKGCDKGFLETAVRLCPERMVYVSCNPATLARDMRFLADH 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +    +   D FP+T H+E  VL+ R
Sbjct: 427 GYKATAVQPVDMFPHTTHVETVVLMSR 453


>gi|225376462|ref|ZP_03753683.1| hypothetical protein ROSEINA2194_02104 [Roseburia inulinivorans DSM
           16841]
 gi|225211838|gb|EEG94192.1| hypothetical protein ROSEINA2194_02104 [Roseburia inulinivorans DSM
           16841]
          Length = 475

 Score =  295 bits (755), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 83/401 (20%), Positives = 145/401 (36%), Gaps = 41/401 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52
              +    Y +QL  K ++++  ++            V    +   EP  YR +A+F I 
Sbjct: 79  GCQIQAMDYAKQLEFKENKVKNNLVRLGGFDADFVDSVTEPIVGMEEPYRYRNKAQFPIG 138

Query: 53  HDGDDLY-HIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLL 100
            D D       +  +T   + +   M G              +    IE         L+
Sbjct: 139 KDKDGNIIAGFYASRTHSIIPVKDCMLGVAENREILDAILSYMRECHIEPYDETTGRGLV 198

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANK 157
           R  L +  + T +    +V         +   E    +            +   +    +
Sbjct: 199 RHALIRYGFTTKEIMVCLVVNGRKLPAQNVLVEKLQVISGMTSISININQKNTNVILGEQ 258

Query: 158 TKICLDRDYVDERLTV--------AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKG 208
           T+    + Y+ + + +         G+ + Y     SF Q N      +    L  A   
Sbjct: 259 TEAIWGQSYITDYIHLRDCTNFERTGKAISYHISPQSFYQVNPEQTEKLYSLALEYAGLT 318

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  + +LYCG G  SL LA     V  VEI   ++  A+ N   N  +N +     ++E
Sbjct: 319 GKESVWDLYCGIGTISLFLAGKAGHVYGVEIVPQAIADAKDNAKRNGFSNTEFFVGKAEE 378

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326
                  E +  +   +         I VDPPR G D+  +  +       I+Y+SC+  
Sbjct: 379 VLPEFYAEHKNEKTDML-----HPDVIVVDPPRKGCDEKCLETILLMKPERIVYVSCDSA 433

Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +L RDL +L    + ++R+   DQF +T H+EC  LL RK 
Sbjct: 434 TLARDLKVLAEGGYEVKRVRAVDQFAHTTHVECVTLLQRKD 474


>gi|283954401|ref|ZP_06371921.1| LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794018|gb|EFC32767.1| LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 354

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 130/352 (36%), Positives = 204/352 (57%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   ++     F   + ++F S+  HYR R E   +H+ D L++ MFD + K++  I
Sbjct: 9   LDEKHSFVKTYFKEFYTKDFKLFSSKAKHYRTRVELSFYHENDTLFYAMFDSKNKKKYII 68

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
            +       I   M +++  +R +  L+ KLF +++LT++ + +I TL+YH+ ++D  ++
Sbjct: 69  KHLDFADEKICTFMPKLLEYLRQDDRLKEKLFGVEFLTTKQELSI-TLLYHKNIED-IKQ 126

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L +  R + Y    + F QPN  
Sbjct: 127 NLENLSNILH-----INLIARSKGKKLVFKTENLRQTLNIQDREIFYEFNNDCFIQPNTA 181

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV       +  DLLELYCG GNF+L LA+ F +VLA EI+K ++  A  N  
Sbjct: 182 INEKMITWVYEILSTQKRIDLLELYCGYGNFTLALAQLFFKVLATEISKNNINFALKNCK 241

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++ER+F RL+DI +  + F  + VDPPR+GLD + + +V
Sbjct: 242 LNNTTNIHFARLSSEELSLAIKKERDFFRLRDIQLDDFNFSHVLVDPPRAGLDKSVIDLV 301

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH IE  ALFDQF  T H+ECGV L +
Sbjct: 302 KKYENIIYISCNPITLKENLKELSLTHKIENFALFDQFVNTPHLECGVFLSK 353


>gi|164686694|ref|ZP_02210722.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM
           16795]
 gi|164604084|gb|EDQ97549.1| hypothetical protein CLOBAR_00289 [Clostridium bartlettii DSM
           16795]
          Length = 466

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 162/390 (41%), Gaps = 41/390 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDG 55
            G  + +  Y++QL  K + ++Q++      +  +         P  YR +A+F I    
Sbjct: 93  GGCQIQELDYQKQLDVKTNEVKQVISRIGKLDDVVIHDTLGMEHPFRYRNKAQFPIQKKD 152

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
           +      + +++ + +  D  +    +           I A  + +      + LLR  +
Sbjct: 153 NMPVIGFYKKKSHDLISTDECIIQHEVNDKIIKIIKTYIRAYNVSIYDEKTHKGLLRHLV 212

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            ++ + T    + ++ L+ +       +E A  L++ +   K  +  +    KT + L +
Sbjct: 213 TKVGFTTG---EVMIVLVANGKKLPYLKELASVLKENIPGFKTLVVNVNT-QKTNVILGK 268

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           +    Y D  +      L++     SF Q N      +    L  A  G    + ++YCG
Sbjct: 269 ENIVAYGDGMIRDYIGELVFEISPLSFFQVNPLQTEVLYNKALEYANLGENDTVFDIYCG 328

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  +EI + +++ A+ N   N+++NV+     ++E    M +E   
Sbjct: 329 IGTISLFLAQKAKKVYGIEIVEDAIKDAKRNAKINNMDNVEFYVGKAEEVVPKMYKE--- 385

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
                      R   + VDPPR G D+  +  +       ++Y+SCNP +L RDL+ L+ 
Sbjct: 386 ---------GKRANVVVVDPPRKGCDEKVLDTIVSMEPDRVVYVSCNPSTLARDLAYLNE 436

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKP 366
             +    +   D FP++ H+E    L ++ 
Sbjct: 437 RGYKCHEIQPVDMFPHSVHVENVAWLSKEK 466


>gi|228989612|ref|ZP_04149596.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
           12442]
 gi|228770149|gb|EEM18729.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
           12442]
          Length = 461

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 160/386 (41%), Gaps = 32/386 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNGSMEADIRPTLGMGNPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNISIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
              + Q+ +  VTLI  +       +    ++  +   K  +Q +     + I  D+ + 
Sbjct: 208 TRAAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPTVKSIMQNVNWRKTSVIFGDKTFN 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA    +  +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAGLTGKEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++E A+ N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVQPKQVVYVSCNPSSLARDVKALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPS 367
           E +   D FP+T H+E  V LVRK +
Sbjct: 436 EYVQPVDMFPHTAHVENVVRLVRKEN 461


>gi|229119979|ref|ZP_04249234.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
 gi|228663445|gb|EEL19030.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
          Length = 458

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAKKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|212638180|ref|YP_002314700.1| tRNA (Uracil-5-)-methyltransferase fused to TRAM domain
           [Anoxybacillus flavithermus WK1]
 gi|212559660|gb|ACJ32715.1| tRNA (Uracil-5-)-methyltransferase fused to TRAM domain
           [Anoxybacillus flavithermus WK1]
          Length = 452

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 150/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      N++       I   +P HYR +++F +   
Sbjct: 80  GCQLQHLDYNAQLEAKRDIVTQALERHSRLNIEALDIRPTIGMDDPWHYRNKSQFQVGVK 139

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAK 103
              +   ++   + E + ID  +      N            L I +    +   ++R  
Sbjct: 140 KGHVIAGLYSMNSHELVDIDRCLIQHDATNRVTTVVKAILQDLRIPVYHERKKTGVVRTI 199

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTK 159
           + ++ + T      +VT        + +     R    ++        Q   +   ++T 
Sbjct: 200 VARVGFYTGDVQLVVVTATKELPRKELFVAEVKRRLPEVKSIAQNINGQKTSLIFGDETI 259

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           +     Y+ E L      L +     +F Q N    + + + V  A    + + +++ YC
Sbjct: 260 VLAGEPYIQEVLG----DLSFELSARAFFQLNPIQTIKLYDEVKKAAALTKNERVVDAYC 315

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LAR    V  ++    +++ AR N   +   NV      ++E      +E  
Sbjct: 316 GVGTIGLWLAREAKEVRGMDTIPEAIDDARQNAERHGFTNVMYAVGKAEELLPKWVKE-- 373

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+G D A +  +       ++Y+SCNP SL RD+  L+
Sbjct: 374 ----------GWKPDVIVVDPPRTGCDHALLKTILQVKPKTVVYVSCNPSSLARDIDTLT 423

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +E +  FD FP+T H+E    LVRK
Sbjct: 424 KQYRVEYIQPFDLFPHTAHVESVAKLVRK 452


>gi|228995690|ref|ZP_04155353.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|229003319|ref|ZP_04161149.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228757937|gb|EEM07152.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228764067|gb|EEM12951.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
          Length = 465

 Score =  294 bits (754), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLHDVPVHPVLGMENPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L    + Q T + + ++  +  +   +AL+ E+        +           LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMETCLIQAEENDALIQEVKRICEKHGITAYNEERHKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   + T + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEITTKFPNVKSIVQNVNTKRTNVIFGDTTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNREQTKVLYDKALEYAKLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFAVGEAEVVIPNWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        TI VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLE 463


>gi|206974173|ref|ZP_03235090.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97]
 gi|217957891|ref|YP_002336435.1| RNA methyltransferase, TrmA family [Bacillus cereus AH187]
 gi|222094090|ref|YP_002528147.1| RNA methyltransferase protein, trma family (tRNA
           (uracil-5-)-methyltransferase) [Bacillus cereus Q1]
 gi|206747413|gb|EDZ58803.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97]
 gi|217063544|gb|ACJ77794.1| RNA methyltransferase, TrmA family [Bacillus cereus AH187]
 gi|221238145|gb|ACM10855.1| RNA methyltransferase protein, trmA family (tRNA
           (uracil-5-)-methyltransferase) [Bacillus cereus Q1]
          Length = 458

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|229074352|ref|ZP_04207390.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-18]
 gi|228708794|gb|EEL60929.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-18]
          Length = 459

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 160/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD++ L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVQPKRVVYVSCNPSSLARDVNALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LV+K
Sbjct: 436 EYVQPVDMFPHTAHVENVVRLVKK 459


>gi|70726057|ref|YP_252971.1| hypothetical protein SH1056 [Staphylococcus haemolyticus JCSC1435]
 gi|68446781|dbj|BAE04365.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 454

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 143/388 (36%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QLA K  ++  +          + N  I    P HYR +++  I  D D
Sbjct: 82  GCQLQHMTYDAQLAMKQSQVTNLFHRKAQFSNTIINKTIGMDHPWHYRNKSQLPIGKDRD 141

Query: 57  -DLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKL 104
                  + Q++ + + +D  +                I    I +      + LLR  +
Sbjct: 142 GKAIIGYYRQRSHDIIDMDSCLIQDDVHQDIMNHVKQWIIDYDISVYNESTKKGLLRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y +       VT   +     +L +  +E    +             +    ++  
Sbjct: 202 IRTGYYSDDKMVVFVTNGKNFQQASILVEKLKETFPNITSIKQNINKSHSNVIMGEQSVT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
              +D + ++L+       ++  + SF Q N+     + +  +  A    +  +L+ YCG
Sbjct: 262 LYGKDKIADQLS----DTTFKISDQSFYQINSSQTEKLYQQAIEYAQLTGEETVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A+ N   N   N   V   ++E     ++    
Sbjct: 318 IGTIGLYMAPVAKHVYGVEVVPSAIKDAQQNATLNGFENTTFVCGKAEEVIIKWKQ---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL +
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFLQTLLKLNPKRIVYISCNPSTQQRDAQILDS 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + ++ +   D FP T H+E   L  RK
Sbjct: 426 QYELQEITPVDMFPQTTHVETVALFERK 453


>gi|228995800|ref|ZP_04155460.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
 gi|229003420|ref|ZP_04161240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228757798|gb|EEM07023.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
 gi|228763961|gb|EEM12848.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
          Length = 461

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 160/386 (41%), Gaps = 32/386 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNGSMEADIRPTLGMGNPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDISHCMIQHKATNEATKVVRRILEKLNISIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
              + Q+ +  VTLI  +       +    ++  +   K  +Q +     + I  D+ + 
Sbjct: 208 TRAAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPTVKSIMQNVNWRKTSVIFGDKTFN 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA    +  +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGKEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++E A+ N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIEDAKKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVQPKQVVYVSCNPSSLARDVKALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPS 367
           E +   D FP+T H+E  V LVRK +
Sbjct: 436 EYVQPVDMFPHTAHVENVVRLVRKEN 461


>gi|325836777|ref|ZP_08166244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
 gi|325491155|gb|EGC93444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
          Length = 459

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 137/390 (35%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              +    Y  QL  K D +                  I   EP  YR + +        
Sbjct: 86  GCQVQHLNYPGQLQMKYDTVVNQFKRIGHIEDANILPTIGMEEPWRYRNKTQVPFGLANG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM-----------ATIRLEPLLRAKLF 105
           D+    + +++ E + + + +  + + + ++ EM                   +LR  + 
Sbjct: 146 DVVAGFYQKRSHEIIDMRHCLIQTEISDEIIHEMRGICRDLKLSPYNEESNTGILRHVIV 205

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +  + T +    +VT    +I    +     E   +++         +       KT I 
Sbjct: 206 RTGFKTDEIMVILVTRKEKIINMDRIVSRLLEKFPQIKVIAQNINPNVTNAILGEKTNII 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
               Y+ + +      + +     SF Q N      +    +    G+ G+  + + YCG
Sbjct: 266 YGEGYIYDEM----NGIGFAISPRSFYQVNPVQTETLYSKAVE-FAGLTGEEIVFDAYCG 320

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L LA+H  +V  VEI   ++  A  N   N   N +     S+E   A       
Sbjct: 321 IGTITLFLAQHAKKVYGVEIIPEAIADANMNAKLNGFENTEFAVGKSEEVIPAWIE---- 376

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-S 336
                          I VDPPR G D   +  +   A   I+Y+SC+  +L RD+ IL  
Sbjct: 377 --------QGIVPDVIVVDPPRKGCDKTLLDTMLEAAPKRIVYVSCDSSTLARDIKILVD 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + +E     D FP T H+E   LL RK 
Sbjct: 429 GGYQLEVAQPVDMFPQTSHVEVVALLTRKN 458


>gi|228925576|ref|ZP_04088665.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228834054|gb|EEM79602.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 465

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|196034748|ref|ZP_03102156.1| RNA methyltransferase, TrmA family [Bacillus cereus W]
 gi|218901523|ref|YP_002449357.1| RNA methyltransferase, TrmA family [Bacillus cereus AH820]
 gi|228944128|ref|ZP_04106507.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|195992791|gb|EDX56751.1| RNA methyltransferase, TrmA family [Bacillus cereus W]
 gi|218536367|gb|ACK88765.1| RNA methyltransferase, TrmA family [Bacillus cereus AH820]
 gi|228815517|gb|EEM61759.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 458

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|301052142|ref|YP_003790353.1| TrmA family RNA methyltransferase [Bacillus anthracis CI]
 gi|300374311|gb|ADK03215.1| RNA methyltransferase, TrmA family [Bacillus cereus biovar
           anthracis str. CI]
          Length = 459

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 158/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRIGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|229095127|ref|ZP_04226122.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
 gi|229101229|ref|ZP_04231993.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
 gi|229114081|ref|ZP_04243506.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228669351|gb|EEL24768.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228682197|gb|EEL36310.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
 gi|228688312|gb|EEL42195.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
          Length = 459

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +    L+      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMNNTLEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYDEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD++ L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVQPKRVVYVSCNPSSLARDVNALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LV+K
Sbjct: 436 EYVQPVDMFPHTAHVENVVRLVKK 459


>gi|294791683|ref|ZP_06756831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp.
           6_1_27]
 gi|294456913|gb|EFG25275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp.
           6_1_27]
          Length = 496

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 145/387 (37%), Gaps = 42/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL+ K  +++ ++         +    +    P  YR + +  +     
Sbjct: 123 GCQLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRNKMQMPVGGTKG 182

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPL--------LRAKLF 105
           D+    +   + + ++       S     I     ++     +EP         LR  + 
Sbjct: 183 DIQMGFYAMGSHDIVQGTNCPIQSEGNNSIAQACYQIAKEFDIEPYDEHTGKGVLRHVIG 242

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +I    S     +VT   H    + W E   +L + +   +  +  +    +T + L   
Sbjct: 243 RIGQ--SGWMIILVTATEHLPHQEKWVE---KLIERVPQVETIVHNVN-GKRTNVILGPK 296

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               Y    +T   + L +    +SF Q N      + +  LA       + +++ YCG 
Sbjct: 297 NSLLYGAGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTEIVIDAYCGT 356

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA     V+ +EI +P++  AR N   N  +N + +   +              
Sbjct: 357 GTISLFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAA------------V 404

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337
            +  +     R   I  DP R+G  +  +    +     I+Y+SCNP ++ RD+ IL+  
Sbjct: 405 EMPKLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHY 464

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + ++ +   D FP T H+E   LL R
Sbjct: 465 GYELKEVQPVDMFPMTAHVEAVALLTR 491


>gi|324324344|gb|ADY19604.1| RNA methyltransferase, TrmA family protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 459

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ ++               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQKVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIATKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLS 456


>gi|229089447|ref|ZP_04220718.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
 gi|228693924|gb|EEL47616.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
          Length = 465

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|52144916|ref|YP_081914.1| RNA methyltransferase [Bacillus cereus E33L]
 gi|51978385|gb|AAU19935.1| RNA methyltransferase protein, trmA family (tRNA
           (uracil-5-)-methyltransferase) [Bacillus cereus E33L]
          Length = 458

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMETCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|49480082|ref|YP_034651.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|301052046|ref|YP_003790257.1| TrmA family RNA methyltransferase [Bacillus anthracis CI]
 gi|49331638|gb|AAT62284.1| RNA methyltransferase protein, trmA family (tRNA
           (uracil-5-)-methyltransferase, TrmA) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|300374215|gb|ADK03119.1| RNA methyltransferase protein, trmA family [Bacillus cereus biovar
           anthracis str. CI]
          Length = 458

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|324324527|gb|ADY19787.1| RNA methyltransferase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 459

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 159/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     ++       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKD------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V LVRK
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLVRK 459


>gi|118476081|ref|YP_893232.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|229182714|ref|ZP_04309955.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
 gi|118415306|gb|ABK83725.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
 gi|228600799|gb|EEK58378.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
          Length = 465

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWIYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|196045238|ref|ZP_03112470.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108]
 gi|225862370|ref|YP_002747748.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102]
 gi|196023822|gb|EDX62497.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108]
 gi|225789520|gb|ACO29737.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102]
          Length = 458

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWIYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|225574104|ref|ZP_03782715.1| hypothetical protein RUMHYD_02169 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038655|gb|EEG48901.1| hypothetical protein RUMHYD_02169 [Blautia hydrogenotrophica DSM
           10507]
          Length = 455

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/389 (22%), Positives = 147/389 (37%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
              L    YE+QL  K +R++  +              I   EP +YR +A+F +  +  
Sbjct: 82  GCQLQALSYEKQLEYKQNRVKSHLERIGGFSDIPMEPIIGMEEPYYYRNKAQFPVGRNKE 141

Query: 56  DDLYHIMFDQQTKERM---RIDYFMPGSLLINALMIEMMATIRLEP--------LLRAKL 104
             +    +  +T   +   R    + G+  I   +I+ M   ++EP        L+R  L
Sbjct: 142 GRIVTGFYAGRTHSIVETRRCYLGVLGNEEILNRVIDWMEENQVEPYDEKSGSGLVRHIL 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKIC 161
            +  + + +    +V         +      I +            +   +    K    
Sbjct: 202 IRYGFSSGEWMVCLVINGDKLPAKERLIRTLIEINGMTSITANVNTRRDNVILGEKILPV 261

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             + Y+ +++      + Y     SF Q N      + E  L   K    ++  +LYCG 
Sbjct: 262 WGQTYITDQIG----EVSYEISPLSFYQVNPLQTRKLYEKALEYAKLQGNEVVWDLYCGI 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VEI   +V  A+ N   N + NV+     ++E     R+     
Sbjct: 318 GTISLFLAQKAKKVYGVEIVPDAVRDAKRNAKINGMKNVEFFVGKAEEILPKKRKS---- 373

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-- 336
                         I VDPPR G D A +  +       ++Y+SC+  +L RDL  L   
Sbjct: 374 -------EGVYADVIVVDPPRKGCDRALLDTILEMGPRRVVYVSCDSATLARDLKYLCGD 426

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +E++   DQF  T H+E   LL RK
Sbjct: 427 GGYRLEKVCPVDQFGMTVHVETICLLERK 455


>gi|289806801|ref|ZP_06537430.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 244

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 155/239 (64%), Positives = 184/239 (76%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LD+ WRE A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDEEWREAATALRDALRAQGLNVHLIGRATKTKIELDQDYIDERLPVAGKEIIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           NSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNGNFSL LAR+F+RVLA EIAKPS
Sbjct: 186 NSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNGNFSLALARNFNRVLATEIAKPS 244


>gi|229055159|ref|ZP_04195586.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
 gi|228721151|gb|EEL72681.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
          Length = 465

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 146/386 (37%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+        +           LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKNGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T        +A  E        ++  +     +   +   +KT + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKEAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|229916717|ref|YP_002885363.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
 gi|229468146|gb|ACQ69918.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
          Length = 454

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 144/386 (37%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
              L    YE QL +K +R+   +          +  I   EP  YR +A+     +GD 
Sbjct: 82  GCQLQHFSYEGQLRQKRERVVDALKRLGQFDVPVHDTIGMPEPWRYRNKAQVPFKQEGDR 141

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    +  ++ + + +   +               +++A  +          ++R  + +
Sbjct: 142 LVSGFYRPRSHDIVEMSECLIQDERNDKAIQVVRDVLDARGVPAYDEKTGRGVIRHVMAR 201

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             Y    S + ++ LI          E    + + L      +Q +   +KT + L    
Sbjct: 202 YGY---HSGELMIVLITKTTKLKGVNEIVADIVERLPDVTSIMQNVNP-DKTNVILGATN 257

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
              Y  E +      L +    +SF Q N      +    L  A       +++ YCG G
Sbjct: 258 KLLYGHETIEDKIAGLTFTISPHSFFQVNPVQTEKLYGKALEYAQLSGTEQVVDAYCGIG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LAR    V  VE+   ++E A+ N   N ++NV     ++++     +++     
Sbjct: 318 TISLFLARKAAHVYGVEVVPEAIEDAKQNALVNEIDNVTYACGAAEDVLPQWKKD----- 372

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TT 338
                        I VDPPR G  ++ +  +       I+Y+SCN  +  RD+  L+   
Sbjct: 373 -------GVNPDVIVVDPPRKGCAESFLETMVEMGPKRIVYVSCNVATQARDMRYLADHG 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +  +   D FP+T H+E    L +
Sbjct: 426 YRLMEVTPVDMFPHTAHVETVAWLEK 451


>gi|196040233|ref|ZP_03107535.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99]
 gi|196029088|gb|EDX67693.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99]
          Length = 458

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGILAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|228950875|ref|ZP_04112998.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228808804|gb|EEM55300.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 454

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLSGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|30018572|ref|NP_830203.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579]
 gi|296501148|ref|YP_003662848.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
 gi|50401538|sp|Q814A6|Y364_BACCR RecName: Full=Uncharacterized RNA methyltransferase BC_0364
 gi|29894113|gb|AAP07404.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579]
 gi|296322200|gb|ADH05128.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
          Length = 458

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|228906093|ref|ZP_04069982.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           200]
 gi|229042217|ref|ZP_04189971.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
 gi|228727152|gb|EEL78355.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
 gi|228853502|gb|EEM98270.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           200]
          Length = 454

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|229165298|ref|ZP_04293085.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
 gi|228618123|gb|EEK75161.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
          Length = 459

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T        +A  E        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKEAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLS 456


>gi|300118952|ref|ZP_07056663.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1]
 gi|298723568|gb|EFI64299.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1]
          Length = 458

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N + N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNDMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|255102596|ref|ZP_05331573.1| putative RNA methyltransferase [Clostridium difficile QCD-63q42]
          Length = 454

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 153/389 (39%), Gaps = 41/389 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55
            G  + D  Y +QL  K + ++Q++              I    P  YR +A+F I  + 
Sbjct: 80  GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  + ++T + +  +  +    +           I A  + +        L+R  +
Sbjct: 140 GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +I + T +    +V            +E A  L++ +   K  +  + + + T   L R
Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGR 255

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           +    Y D ++      L++     SF Q N      + +  L  A       + ++YCG
Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDIYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    M RE   
Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336
                          + VDPPR G D+  +  +       I+Y+SCNP +L RDL  L+ 
Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDYLNV 423

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
                      D FP++ H+E  VLL R+
Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETCVLLQRR 452


>gi|228956753|ref|ZP_04118539.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228802941|gb|EEM49773.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 455

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLS 452


>gi|254977015|ref|ZP_05273487.1| putative RNA methyltransferase [Clostridium difficile QCD-66c26]
 gi|255651934|ref|ZP_05398836.1| putative RNA methyltransferase [Clostridium difficile QCD-37x79]
 gi|306521684|ref|ZP_07408031.1| putative RNA methyltransferase [Clostridium difficile QCD-32g58]
          Length = 544

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 152/394 (38%), Gaps = 41/394 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55
            G  + D  Y +QL  K + ++Q++              I    P  YR +A+F I  + 
Sbjct: 80  GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  + ++T + +  +  +    +           I A  + +        L+R  +
Sbjct: 140 GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +I + T +    +V            +E A  L++ +   K  +  + + + T   L R
Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGR 255

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           +    Y D ++      L++     SF Q N      + +  L  A       + ++YCG
Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDIYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    M RE   
Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336
                          + VDPPR G D+  +  +       I+Y+SCNP +L RDL  L+ 
Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDYLNV 423

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
                      D FP++ H+E   LL +     H
Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETVALLSKLDVDKH 457


>gi|152974152|ref|YP_001373669.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022904|gb|ABS20674.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH
           391-98]
          Length = 458

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QLA K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHVTYEGQLAAKQKQVRDVMQRIGGLHDVPVHPVLGMENPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+        +           LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMETCLIQAEENDTLIQEVKRICETHGIRAYNEERHKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +  ++T +     +T    L   + + +        ++  +     +   +     T + 
Sbjct: 207 RYGHVTGEIMLVFITRTAELPNKKAIIEEITAKFPNVKSIVQNVNTKRTNVIFGETTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIQFAISARSFYQVNPEQTKVLYDKALEYAQLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N   N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNNMTNAEFAVGEAEVVIPNWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        TI VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|116873184|ref|YP_849965.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742062|emb|CAK21186.1| RNA methyltransferase, TrmA family [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 453

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 146/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QLA K +++ + M       +++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLAFKRNQVEETMKRIGKLEVEVPKTLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++ + + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHDIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYNEKTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +    +TK    
Sbjct: 204 FAHTTGQLMIVLVTNKDRIPFKEEIIRDLTEQLELTSIVQNINSHKTNVIFGERTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      +    L AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEILYAQALDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N A N + N       ++E      +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAALNELTNTTFETGKAEEVIPNWYK------- 372

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                +      + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 373 -----NGITADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
             +++   D FP T H+E   +L  K
Sbjct: 428 EAKKVQPVDMFPMTTHIEAVTVLNLK 453


>gi|126701016|ref|YP_001089913.1| putative RNA methyltransferase [Clostridium difficile 630]
 gi|115252453|emb|CAJ70296.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Clostridium
           difficile]
          Length = 454

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 153/389 (39%), Gaps = 41/389 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55
            G  + D  Y +QL  K + ++Q++              I    P  YR +A+F I  + 
Sbjct: 80  GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  + ++T + +  +  +    +           I A  + +        L+R  +
Sbjct: 140 GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +I + T +    +V            +E A  L++ +   K  +  + + + T   L R
Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGR 255

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           +    Y D ++      L++     SF Q N      + +  L  A       + ++YCG
Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDIYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    M RE   
Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336
                          + VDPPR G D+  +  +       I+Y+SCNP +L RDL  L+ 
Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDYLNV 423

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
                      D FP++ H+E  VLL R+
Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETCVLLQRR 452


>gi|16800929|ref|NP_471197.1| hypothetical protein lin1863 [Listeria innocua Clip11262]
 gi|50401774|sp|Q92AQ7|Y1863_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1863
 gi|16414364|emb|CAC97093.1| lin1863 [Listeria innocua Clip11262]
 gi|313618389|gb|EFR90415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
           S4-378]
          Length = 453

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 147/386 (38%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QLA K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVEVPDTLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++ + + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHDIIDMSTCLIHNEKGDVAVQKTREILAKYGTEPYDEKTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT            +     + +   +     Q   +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERLPFKAEIIQDLTNQLEVTSIVQNINPQKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222
            D +++ +      + +     SF Q N      + +  +  A    +  +++ YCG G+
Sbjct: 264 SDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDSAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N++ N       ++E      +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLTNTTFETGKAEEVIPQWYK------- 372

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTH 339
                +      + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL    +
Sbjct: 373 -----NGIVADVLVVDPPRKGCDETLLETILAMKPKKVVYVSCNPGTLARDMKILTEGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
             +++   D FP T H+E   +L  K
Sbjct: 428 EAKKVQPVDMFPMTTHIEAVTVLTLK 453


>gi|297583072|ref|YP_003698852.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297141529|gb|ADH98286.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
           MLS10]
          Length = 441

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 146/387 (37%), Gaps = 38/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             +L    YE QL EK  ++  +M           +     ++P  YR +++  +  +  
Sbjct: 69  GCSLQHLSYEGQLHEKQKQVMNVMERIGGFTHLTVHPVKGMTDPWRYRNKSQVPVGEEQG 128

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            +    + +++   + ++  +               L N   I      + + +LR  + 
Sbjct: 129 RIIAGFYAERSHSIVDMEACLIQHEDQDRIVNLVKELANQHGIRGYDDQKHKGVLRHVVI 188

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +   ++      +V L+          +    +   +      +Q I       I  D+ 
Sbjct: 189 RRSRISG---DVMVVLVTKEQALPHKEQLIQAITGEVPNVTSIMQNINPKRTNVIFGDKT 245

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
              + +E +    + + +     SF Q N      + E  L  A       +++ YCG G
Sbjct: 246 VCLWGEETIKDRIKGIEFVISAKSFYQVNPVQTEVLYEQALNYAALTGSEKVIDAYCGIG 305

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA+    V  VE   P+++ A+ N  ANH++NV      ++              
Sbjct: 306 TISLFLAQKARHVYGVESVAPAIDDAKRNAKANHIDNVTFAVGEAETLMPWWYS------ 359

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338
                        I VDPPR G + A +  + A     I+Y+SCNP +L RD+  LS   
Sbjct: 360 ------QGLDPDVIVVDPPRKGCETAMLDAMAAMKPERIVYVSCNPATLARDMKYLSEKG 413

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +T++ +   D FP T H+E   ++ R+
Sbjct: 414 YTVKEVQPVDMFPQTTHVEAVTVMYRE 440


>gi|229154085|ref|ZP_04282210.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
 gi|228629365|gb|EEK86067.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
          Length = 465

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLSTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|228983573|ref|ZP_04143778.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228776169|gb|EEM24530.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 458

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLSTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|206967682|ref|ZP_03228638.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
 gi|206736602|gb|EDZ53749.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
          Length = 454

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIHDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|313623370|gb|EFR93595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
           J1-023]
          Length = 453

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 147/386 (38%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QLA K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++ + + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHDIIDMSTCLIHNEKGDVAVQKTREILAKYGTEPYDEKTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT            +     + +   +     Q   +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERLPFKAEIIQDLTNQLEVTSIVQNINPQKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222
            D +++ +      + +     SF Q N      + +  +  A    +  +++ YCG G+
Sbjct: 264 SDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDSAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N++ N       ++E      +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLTNTTFETGKAEEVIPQWYK------- 372

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTH 339
                +      + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL    +
Sbjct: 373 -----NGIVADVLVVDPPRKGCDETLLETILAMKPKKVVYVSCNPGTLARDMKILTEGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
             +++   D FP T H+E   +L  K
Sbjct: 428 EAKKVQPVDMFPMTTHIEAVTVLTLK 453


>gi|229194707|ref|ZP_04321500.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
 gi|228588810|gb|EEK46835.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
          Length = 458

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|229095036|ref|ZP_04226032.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
 gi|229113989|ref|ZP_04243415.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228669448|gb|EEL24864.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
 gi|228688366|gb|EEL42248.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
          Length = 458

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   +AL+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDALIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   + T + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|294793541|ref|ZP_06758678.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp.
           3_1_44]
 gi|294455111|gb|EFG23483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella sp.
           3_1_44]
          Length = 458

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 142/382 (37%), Gaps = 34/382 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL+ K  +++ ++      N ++        +P  YR + +  +     
Sbjct: 84  GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPELVKPALGPKDPWAYRNKMQMPVGGTKG 143

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPL----LRAKLFQIDY 109
           D+    +   + + ++            +I     ++   + +EP      +  L  I  
Sbjct: 144 DILMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKELDVEPYDEHTGKGVLRHIIG 203

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165
              QS   +V L+          +    L + +   +  +  +    +T + L       
Sbjct: 204 RIGQSG-WMVILVTATDNLPHQEKWVKNLTERVPQVETIVHNVN-GKRTNVILGPKNRIL 261

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           Y D  +T   + L +    +SF Q N      + +  L  A    +  +++ YCG G  S
Sbjct: 262 YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALKYANLKGEETVIDAYCGTGTIS 321

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA     V+ +EI +P++  AR N   N  +N + +   +               +  
Sbjct: 322 LFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAA------------VEMPK 369

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTI 341
           +     R   I  DP R+G     +          I+Y+SCNP ++ RD+ IL+   + +
Sbjct: 370 LYKAGVRPDVIVFDPIRAGCKKEVLTSAAGMEPKRIVYVSCNPATMARDIEILTHYGYEL 429

Query: 342 ERLALFDQFPYTRHMECGVLLV 363
           + +   D FP T H+E   LL 
Sbjct: 430 QEVQPVDMFPMTAHVEAVALLT 451


>gi|229107991|ref|ZP_04237618.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
 gi|228675494|gb|EEL30711.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
          Length = 454

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLANVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|228931823|ref|ZP_04094719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228827803|gb|EEM73541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 458

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 149/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+  +               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQAVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   +++ +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKVIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|229125816|ref|ZP_04254842.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|229143116|ref|ZP_04271549.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228640389|gb|EEK96786.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
 gi|228657673|gb|EEL13485.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
          Length = 454

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|163938323|ref|YP_001643207.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
 gi|163860520|gb|ABY41579.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis
           KBAB4]
          Length = 458

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T        +A  E        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKEAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|229131321|ref|ZP_04260222.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
 gi|228652142|gb|EEL08078.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
          Length = 465

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T        +A  E        ++  +     +   +   +KT + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKEAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|218895441|ref|YP_002443852.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
 gi|228899050|ref|ZP_04063323.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           4222]
 gi|218544636|gb|ACK97030.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
 gi|228860625|gb|EEN05012.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           4222]
          Length = 454

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIVEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|229028174|ref|ZP_04184315.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
 gi|228733122|gb|EEL83963.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
          Length = 465

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   + T + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|229015714|ref|ZP_04172696.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
 gi|228745571|gb|EEL95591.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
          Length = 458

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 146/386 (37%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+                 +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKYGISAYNEEHNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   + T + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAQLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|229021911|ref|ZP_04178475.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
 gi|228739383|gb|EEL89815.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
          Length = 465

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 146/386 (37%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+                 +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKYGISAYNEEHNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   + T + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAQLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|228963414|ref|ZP_04124575.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796308|gb|EEM43755.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 455

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIVEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|152974246|ref|YP_001373763.1| RNA methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022998|gb|ABS20768.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH
           391-98]
          Length = 458

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 160/388 (41%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    YE+QL +K D + Q    +   +L+      +   +P HYR +++  +    
Sbjct: 87  GCQLQHLDYEEQLNQKRDIVVQAFQKYMKNSLEEKIRPTLGMKDPWHYRNKSQLQVGRKD 146

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQI- 107
           + +   +++Q +   + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 147 EKVITGLYEQNSHRLIDIAHCMIQHKATNEATKVVRRILEKLNISIYNERKGKGLIRTIV 206

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKI 160
             +  Q+ +  +TLI  +       +    ++  + A K  +Q +          +KT  
Sbjct: 207 TRVAVQTGEVQITLITAKDEFPNKEQFIAEVQKQMPAVKSIMQNVNGRKTSVIFGDKTFH 266

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219
              ++ + E L      L +     +F Q N    V +  E   AA    +  +++ YCG
Sbjct: 267 LAGKEVIQETLG----DLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGKEKIVDAYCG 322

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L LA     V  +++   ++  AR N   +   N K     ++++     +E   
Sbjct: 323 VGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE--- 379

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                     +    I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  
Sbjct: 380 ---------GWHPDVIVVDPPRTGCDDKLLETILKVQPKTVVYVSCNPSSLARDVKTLMK 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
           ++ +E +   D FP+T H+E  VLL R+
Sbjct: 431 SYEVEYVQPVDMFPHTAHVETIVLLQRR 458


>gi|229176912|ref|ZP_04304308.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
 gi|228606585|gb|EEK64010.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
          Length = 454

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMENPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L     + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKNAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|229148722|ref|ZP_04276972.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
 gi|228634730|gb|EEK91309.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
          Length = 454

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIVAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEIQPVDMFPHTTHVECVAWLK 452


>gi|229101137|ref|ZP_04231903.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
 gi|228682265|gb|EEL36376.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
          Length = 465

 Score =  293 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   + T + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G DDA +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GIIADTMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|229171165|ref|ZP_04298759.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
 gi|228612343|gb|EEK69571.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
          Length = 465

 Score =  293 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   + T + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDTTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G DDA +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GIIADTMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|47569584|ref|ZP_00240262.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
 gi|47553767|gb|EAL12140.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
          Length = 458

 Score =  293 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKTPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|182624472|ref|ZP_02952255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens D str. JGS1721]
 gi|177910280|gb|EDT72661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens D str. JGS1721]
          Length = 455

 Score =  293 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 151/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K DR++  +      +  I        EP  YR + +  I     
Sbjct: 81  GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMEEPWRYRNKVQLPIGLING 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102
           ++    F  ++ + + ++  +    +   +  L  + +    + P           ++R 
Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTRKWIEKFNIRPYNVDGEYDEKGIVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +  + T++    +VT        + + +  ++    +   K  IQ I  + KT + L
Sbjct: 201 IMIRRGFTTNEVMVVLVTNGEKLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
             +    + ++ ++       +     SF Q N      +    L  A      ++ + Y
Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L L++   +V  VEI   +++ A  N   N V+NV+     S+          
Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVDNVEFFVGESEVV-------- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
               + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L RDL+IL
Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLAIL 424

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365
               +    +   D FP T H+E  V L RK
Sbjct: 425 EENGYKTLEVQPVDMFPNTSHVETIVSLRRK 455


>gi|30260503|ref|NP_842880.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|47525600|ref|YP_016949.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183346|ref|YP_026598.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|65317755|ref|ZP_00390714.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Bacillus anthracis str.
           A2012]
 gi|167634215|ref|ZP_02392537.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
 gi|167640112|ref|ZP_02398379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
 gi|170688363|ref|ZP_02879572.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
 gi|177653642|ref|ZP_02935781.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
 gi|190567579|ref|ZP_03020492.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812998|ref|YP_002813007.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
           684]
 gi|229601940|ref|YP_002864948.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
 gi|254686717|ref|ZP_05150575.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724793|ref|ZP_05186576.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           A1055]
 gi|254742321|ref|ZP_05200007.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Kruger B]
 gi|254756096|ref|ZP_05208125.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Vollum]
 gi|254761914|ref|ZP_05213763.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Australia 94]
 gi|50401540|sp|Q81ZD6|Y333_BACAN RecName: Full=Uncharacterized RNA methyltransferase
           BA_0333/GBAA_0333/BAS0318
 gi|30253871|gb|AAP24366.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames]
 gi|47500748|gb|AAT29424.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177273|gb|AAT52649.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne]
 gi|167511923|gb|EDR87302.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
 gi|167530529|gb|EDR93244.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
 gi|170667695|gb|EDT18449.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
 gi|172081222|gb|EDT66297.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
 gi|190561366|gb|EDV15338.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007157|gb|ACP16900.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
           684]
 gi|229266348|gb|ACQ47985.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
          Length = 458

 Score =  293 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 150/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + + L D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQLVDMFPHTTHVECVAWLK 456


>gi|228970500|ref|ZP_04131151.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228789232|gb|EEM37160.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 465

 Score =  293 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N   N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|326938107|gb|AEA14003.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 458

 Score =  293 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 87  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 147 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 207 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 267 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 322

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N   N++ N +     ++       +E    
Sbjct: 323 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPKWYKE---- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 379 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 430

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 431 GYKTQEVQPVDMFPHTTHVECVAWLK 456


>gi|229009816|ref|ZP_04167036.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
 gi|228751434|gb|EEM01240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
          Length = 465

 Score =  293 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLKAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T        +A  E        ++  +     +   +   +KT + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKEAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGDETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVTWLK 463


>gi|218233353|ref|YP_002365162.1| RNA methyltransferase, TrmA family [Bacillus cereus B4264]
 gi|218161310|gb|ACK61302.1| RNA methyltransferase, TrmA family [Bacillus cereus B4264]
          Length = 454

 Score =  293 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLSYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMQNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|149180724|ref|ZP_01859227.1| YefA [Bacillus sp. SG-1]
 gi|148851514|gb|EDL65661.1| YefA [Bacillus sp. SG-1]
          Length = 457

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 143/385 (37%), Gaps = 34/385 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              +    YE QL  K   +R +M           +  +    P  YR +A   +     
Sbjct: 86  GCQVQHISYEGQLKAKEKHVRDVMARIGKLPDVPVHPTLGMENPWRYRNKAAVPVGEREG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109
            L    + Q++ E + ++  +      + ++ ++             E   R  L  I  
Sbjct: 146 GLVAGFYQQRSHEIIDMERCVIQHEKNDEIVQKVKEICQKYGIRPYNEEKHRGTLRHIMT 205

Query: 110 LTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165
               Q+ + +V L+          +    +  ++   K  IQ +  + +T + +  +   
Sbjct: 206 RYGYQTGEVMVVLVTRTADLPNKNQIVDEIVSSIEGVKSVIQNVN-SKRTNVIMGDETNV 264

Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223
            + +E +      + +     SF Q N      + E  L  A      ++++ YCG G  
Sbjct: 265 LWGEEVIYDYIGDVKFAISARSFYQVNPEQTRVLYEKALEYADLSGDENVIDAYCGIGTI 324

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA+   +V  VEI   ++E A+ N   N   N +     ++        E       
Sbjct: 325 SLFLAQKAKKVYGVEIVPQAIEDAKKNAELNGFTNTEFEAGPAEVVIPRWYDE------- 377

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHT 340
                  +   + VDPPR G D+A +  +       ++Y+SCNP +L RDL +L    + 
Sbjct: 378 -----GIKADVLVVDPPRKGCDEALLNTILEMKPRKVVYVSCNPATLARDLQVLEDGGYR 432

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
              +   D FP T H+EC   LV K
Sbjct: 433 TLEVQPVDMFPQTMHVECVAQLVLK 457


>gi|313637426|gb|EFS02888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
           S4-171]
          Length = 453

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 148/386 (38%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y  QLA K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYVGQLAFKRNQVEETMKRIGKLNVEVKETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++ E + +   +  S            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHEIIDMSTCLIQSEQGDFAVQKTREVLAKYGTEPYDEKTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +     Q   +   ++TK    
Sbjct: 204 FAHTTGQLMLVLVTTKDRLPFKEEIIRDLTEQLALTSIVQNINPQKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIEAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N+++N       ++E      +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLSNTTFETGKAEEVIPTWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ ILS   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDMKILSDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
              ++   D FP T H+E   +L  K
Sbjct: 428 EANQVQPVDMFPMTTHIEAVTVLNLK 453


>gi|327438590|dbj|BAK14955.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
          Length = 454

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 145/386 (37%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH-DGD 56
              L    YE QL  K + +  +M      +  +       EP HYR +++      +  
Sbjct: 83  GCQLQHLSYEGQLKWKQNMVANVMKRLGKIDAPVHPVKGMEEPWHYRNKSQIPFAQNESG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105
            +    +  ++   + ++  +  +   + +M ++   + +           + +LR  + 
Sbjct: 143 QMVAGFYKTKSHSIVDMERCLIQTGEADVVMADLKRELEILGLRPYDEKSHQGMLRHVVV 202

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +    T    + +V L+              ++R  +      +Q +    KT +    D
Sbjct: 203 RKGRATG---EVMVVLVTKSKKFPQASAVIEKIRALIPNVTSIVQNVN-GEKTNVIFGND 258

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
               +  + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 259 TFTLWGKDTIEDTIGNVRFEISARSFYQVNPVQTEVLYKQALDYAQLTGNERVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+    V+ VEI + ++E A+ N A N   N       ++E      +E    
Sbjct: 319 GSISLFLAQKAGHVMGVEIVEQAIEDAKRNAALNGFTNTYFEAGPAEEVIPRWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-T 337
                         + VDPPR G D+A +  +  Q    ++Y+SCNP +L RDL IL   
Sbjct: 375 --------GKEADVLVVDPPRKGCDEALLSTIIEQKPKRVVYVSCNPATLARDLRILEDG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H E    L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHCEAVAWLE 452


>gi|165871358|ref|ZP_02216006.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
 gi|170708771|ref|ZP_02899208.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
 gi|164712842|gb|EDR18371.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
 gi|170126350|gb|EDS95240.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
          Length = 454

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 150/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + + L D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQLVDMFPHTTHVECVAWLK 452


>gi|254739058|ref|ZP_05196760.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Western North America USA6153]
          Length = 404

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 150/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 33  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 92

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 93  GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMA 152

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 153 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 212

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 213 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 268

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A+ N A N++ N +     ++       +E    
Sbjct: 269 GSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 324

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 325 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 376

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + + L D FP+T H+EC   L 
Sbjct: 377 GYKTQEVQLVDMFPHTTHVECVAWLK 402


>gi|229068074|ref|ZP_04201382.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
 gi|228715082|gb|EEL66949.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
          Length = 454

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L     + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKNAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|229829394|ref|ZP_04455463.1| hypothetical protein GCWU000342_01484 [Shuttleworthia satelles DSM
           14600]
 gi|229791825|gb|EEP27939.1| hypothetical protein GCWU000342_01484 [Shuttleworthia satelles DSM
           14600]
          Length = 468

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 87/398 (21%), Positives = 152/398 (38%), Gaps = 40/398 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------VPNLQIFRSEPIHYRMRAE 48
              L    YE+Q A K  R+R  ++                V    +   +   YR +A+
Sbjct: 79  GCQLQALSYEKQKAWKEARVRNDLIRIGGFAPELVDRVVDRVMEPILGMEKAFRYRNKAQ 138

Query: 49  FHIWHDG-DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRL 96
           F +  +   ++    +  ++   + ID  + G+             + A  I     +  
Sbjct: 139 FPLGENREGEIISGFYAARSHRIIPIDDCLLGAPENESILKAVKDYMRACRIRPYNEVTG 198

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIG 153
             L+R  L +  + + Q    ++             +   ++   +        +   + 
Sbjct: 199 RGLVRHVLIRKGFASGQIMVCLIINGRELPRQQELIDRLTKIVGMKSICINSNCKQSNVI 258

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGD 212
             ++T+    +    E +T     + +     SF Q N      + E  L  A    Q  
Sbjct: 259 MGDETRCIWGQ----ESITDYIGDIAFAISPRSFYQVNPYQTARLYEKALEYADLKGQES 314

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G  SL LAR   +V  VEI   ++E A+ N   N + N       ++E    
Sbjct: 315 VWDLYCGIGTISLFLARKAGQVYGVEIIPEAIEDAKANARRNGIENAHFFVGKAEEILPD 374

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCR 330
                   R   +   +     I VDPPR G DD  +  M++  P  I+Y+SC+P +L R
Sbjct: 375 FYE----GRRDAVAGDALHPDVIVVDPPRKGCDDICLQTMLRMRPDRIVYVSCDPATLAR 430

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           DL  L    ++++R+   DQFP T H+EC  L+ R  S
Sbjct: 431 DLKTLAEGGYSLQRVCPVDQFPQTTHVECIALIQRVKS 468


>gi|57167831|ref|ZP_00366971.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli RM2228]
 gi|57020953|gb|EAL57617.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli RM2228]
          Length = 362

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 132/351 (37%), Positives = 209/351 (59%), Gaps = 10/351 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   N ++F S+  HYR RAE   +HD D++Y+ MF  + K+++ I
Sbjct: 12  LEEKASFIKEFFKDFYQGNFELFSSKDKHYRTRAELSFYHDKDEIYYAMF--ENKKKIII 69

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +        I A M +++  IR    L+ KLF +++L ++++ +  TL+YH+ ++  + +
Sbjct: 70  ESLEFADEKITAFMPKLLKQIRNNTNLKEKLFGVEFLATKNELS-TTLLYHKNIELIYND 128

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                     + +    LI R+   K+   ++ + + L + GR + Y    + F QPN  
Sbjct: 129 LNN------LSLELDANLIARSKGKKLVFKKENLRQELDIQGRKIFYEFNNDCFIQPNTS 182

Query: 194 INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV        + DLLELYCG GNF+L LA  F+ VLA EI+K ++  A  N  
Sbjct: 183 INEKMITWVCENLKTQERKDLLELYCGYGNFTLALAIFFNNVLATEISKSNINFALLNCK 242

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+++N+   R+SS+E +QA+++EREF RLKDID+ ++ F  I VDPPR+GLD + + ++
Sbjct: 243 INNISNIHFTRLSSEELSQALKKEREFFRLKDIDLDNFNFSHILVDPPRAGLDKSVIDLI 302

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           + Y +I+YISCNP SL  +L  L+ TH +E+ ALFDQF  T H+ECGVLL 
Sbjct: 303 KNYENIIYISCNPISLKENLKELALTHKVEKFALFDQFVNTPHLECGVLLK 353


>gi|228937613|ref|ZP_04100251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228977069|ref|ZP_04137472.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228782686|gb|EEM30861.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           Bt407]
 gi|228822094|gb|EEM68084.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 454

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLADVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N   N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|308172559|ref|YP_003919264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM
           7]
 gi|307605423|emb|CBI41794.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM
           7]
 gi|328552324|gb|AEB22816.1| RNA methyltransferase, TrmA family protein [Bacillus
           amyloliquefaciens TA208]
 gi|328910668|gb|AEB62264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens LL3]
          Length = 458

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 144/390 (36%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K  +++ ++      +         +   +P +YR +A+  +   
Sbjct: 85  GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSSVIVHPTLGMEDPWNYRNKAQVPVGER 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              L    + Q++ + + +   +               +     ++     R +  LR  
Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERHKGWLRHI 204

Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           + +   +T +     +T      H+  + +        ++  +         +   N+T 
Sbjct: 205 MVRYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNVIFGNETS 264

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +    +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YC
Sbjct: 265 VIWGEEYIYDLIG----DVKFAISARSFYQVNPEQTKVLYDKALEYAELQGKETVIDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++        E  
Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                          T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L 
Sbjct: 379 ----------GITADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLARDLRVLE 428

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365
              +    +   D FP+T H+EC   L  K
Sbjct: 429 DGGYQTLEVQPVDMFPHTNHVECVAKLELK 458


>gi|321314402|ref|YP_004206689.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
 gi|320020676|gb|ADV95662.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
          Length = 461

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 146/390 (37%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K  +++ ++             +  +   +P +YR +A+  +   
Sbjct: 85  GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNKAQVPVGER 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              L    + Q++ + + +   +               +     ++     R +  LR  
Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERHKGWLRHI 204

Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           + +   +T +     +T      H+  + +        ++  +         +   N+T 
Sbjct: 205 MVRYGVVTGEMMIVFITRTSDFPHKAKVIEDITAQFPHVKSIVQNINPNKTNVIFGNETN 264

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +    +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YC
Sbjct: 265 VIWGEEYIYDLIG----DVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEETVIDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++        E  
Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                          T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L 
Sbjct: 379 ----------GIAADTLVVDPPRKGCDEALLRTILEMKPKRVVYVSCNPGTLARDLRVLE 428

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365
              +    +   D FP+T H+EC V+L  +
Sbjct: 429 DGGYVTREVQPVDMFPHTNHVECVVVLELR 458


>gi|291541472|emb|CBL14582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus bromii
           L2-63]
          Length = 494

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 82/394 (20%), Positives = 156/394 (39%), Gaps = 45/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60
              L    Y +QL  K  ++ +++  F      I    P HYR + +   + D    +  
Sbjct: 20  GCQLQNLSYPEQLEFKQKKVEKLLKRFCTVEKIIGMKTPYHYRNKVQAAFYTDKKGKIIS 79

Query: 61  IMFDQQTKERMRIDYF----MPGSLLINALMIEM-------MATIRLEPLLRAKLFQIDY 109
            ++   +   + ID      +    +I A+   +             +  LR  L +  +
Sbjct: 80  GVYQSGSHHVVGIDSCQTEDVIADKIIVAVRKLLPSFRMTTYNEDTGKGFLRHILVKRGF 139

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
            T+Q    +VT      +  +       +          +Q I          +  K+  
Sbjct: 140 ATNQIMLVLVT---GTPVFPSKNNFVKAILKQFPEITTIVQNINPYRTNLVLGDNQKVLY 196

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            + Y+++ L        +R    SF Q N      +    +  A       +L+ YCG G
Sbjct: 197 GKGYIEDILC----GCRFRISPKSFYQINPVQTEVLYGKAIEFANLKGNETVLDTYCGIG 252

Query: 222 NFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              ++ A++    V+  E+   +V  A  N  AN++ N++  +  + EF +    E E  
Sbjct: 253 TIGIIAAKNGAGNVIGAELNGDAVRDAIVNARANNLKNIRFYKADAGEFMREATDEDE-- 310

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST- 337
                     +   +F+DPPR+G D   +  +++  P  ++Y+SCNP++L RDL+ L+  
Sbjct: 311 ----------KPDVVFMDPPRAGSDRKFLDSLIKMSPKKVVYVSCNPETLARDLAYLTQN 360

Query: 338 -THTIERLALFDQFPYTRHMECGVLLV-RKPSGW 369
             +  +++   D FP+T H+E  VLL  +KP G 
Sbjct: 361 SPYKAQKIQPVDMFPHTAHIETVVLLSHKKPDGH 394


>gi|229083613|ref|ZP_04215941.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
 gi|228699703|gb|EEL52360.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
          Length = 465

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 142/385 (36%), Gaps = 38/385 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              +    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQVQHLTYEGQLKAKEKQVRDVMQRIGGLQDVPVHPVLGMENPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+        +           LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMETCLIQAEENDTLIQEVKRICEKHGIAAYNEERHKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +   +T +     +T        +A  E    +       K  +Q +       I  D  
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKEAIIE---EIATKFPEVKSIVQNVNTKRTNVIFGDTT 270

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
              Y  E +      + +     SF Q N      + +  L  A       +++ YCG G
Sbjct: 271 TVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKALEYAKLDGNETVIDAYCGIG 330

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           + SL LA+   +V  VEI   ++E A+ N   N++ N +     ++       +E     
Sbjct: 331 SISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNNMTNAEFAVGEAEVVIPNWYKE----- 385

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338
                       TI VDPPR G D+A +  +       ++Y+SCNP +L RDL +L    
Sbjct: 386 -------GIIADTIVVDPPRKGCDEALLNTIIEMKPKRVVYVSCNPATLARDLKVLEEGG 438

Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363
           +  + +   D FP+T H+EC   L 
Sbjct: 439 YKTQEVQPVDMFPHTTHVECVAWLE 463


>gi|323703882|ref|ZP_08115516.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531170|gb|EGB21075.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans
           DSM 574]
          Length = 462

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 145/393 (36%), Gaps = 43/393 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K   ++  +              I    P HYR +   H      
Sbjct: 85  GCQLQHLDYQAQLTHKTTLVKSALTRIGGLNDVPVRPTIGMEYPWHYRNKIHLHATQSAG 144

Query: 57  DLYHIMFDQQTKERM--------------RIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
            +    F + T +                 I+       L+N+  I+       + LLR 
Sbjct: 145 RIKLGFFAEGTHQLTADISEQSCLLVNQEIIEVVAAVEELLNSFKIKSYDWESKQGLLRH 204

Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            + +  Y T +    +VT     +  + L         R+   +         +    + 
Sbjct: 205 VMIRRGYATGEIMVVLVTTAENWLTEQELAREIVNRHPRVVSVIRNINTNPGRLILGPQN 264

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
           ++   +D + +RL      L ++    SF Q N      +    L  A       +++ Y
Sbjct: 265 QVLAGKDSITDRLC----GLKFKISAASFYQVNPRQTEVLYNKALEFANLKGDETVVDAY 320

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  + +LARH   V+ +EI   +V  AR N   N++ N++    S +          
Sbjct: 321 CGIGTIASLLARHAGSVIGLEIVPDAVTDARENARLNNLFNIEFFNGSVERL-------- 372

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
               L ++     R   + +DPPR G +   +  +     P ++Y+SC+P +L RDL IL
Sbjct: 373 ----LPEMVARGLRPDLVVLDPPRKGCEKEVLEAILKTQVPRVVYVSCDPATLARDLGIL 428

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +   +    +   D FP+T H+EC V L RK S
Sbjct: 429 AGAGYEPAEVQPVDMFPWTCHVECVVWLKRKHS 461


>gi|289435088|ref|YP_003464960.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171332|emb|CBH27874.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 453

 Score =  292 bits (747), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 148/386 (38%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y  QLA K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYVGQLAFKRNQVEETMKRIGKLNVEVKETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++ E + +   +  S            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHEIIDMSTCLIQSEQGDFAVQKTREVLAKYGTEPYDEKTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +     Q   +   ++TK    
Sbjct: 204 FAHTTGQLMLVLVTTKDRLPFKEEIIRDLTEQLALTSIVQNINPQKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIEAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N+++N       ++E      +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARTNAELNNLSNTTFETGKAEEVIPTWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ ILS   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDMKILSDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
              ++   D FP T H+E   +L  K
Sbjct: 428 EANQVQPVDMFPMTTHIEAVTVLNLK 453


>gi|110803163|ref|YP_697677.1| RNA methyltransferase [Clostridium perfringens SM101]
 gi|110683664|gb|ABG87034.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens SM101]
          Length = 455

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 151/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K DR++  +      +  I        EP  YR + +  I     
Sbjct: 81  GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMEEPWRYRNKVQLPIGLING 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102
           ++    F  ++ + + ++  +    +   +  L  E +    + P           ++R 
Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +  + T++    +VT   +    + + +  ++    +   K  IQ I  + KT + L
Sbjct: 201 IMIRRGFTTNEVMVVLVTNGENLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
             +    + ++ ++       +     SF Q N      +    L  A      ++ + Y
Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+          
Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
               + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L RDL +L
Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365
               +    +   D FP T H+E   LL++K
Sbjct: 425 EENGYKTLEVQPVDMFPNTAHIENVALLIKK 455


>gi|229159469|ref|ZP_04287487.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
 gi|228624040|gb|EEK80848.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
          Length = 465

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 94  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ ++               R +  LR  + 
Sbjct: 154 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQDVKRICEKHGISAYNEERNKGTLRHVMA 213

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 214 RYGQVTGEIMLVFITRTAELPNKQAIIEEITAKFPEVKSIVQNVNPKRTNVIFGDKTTVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 274 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 330 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 386 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 438 GYKTQEVQPVDMFPHTTHVECVAWLK 463


>gi|110800984|ref|YP_694814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens ATCC 13124]
 gi|110675631|gb|ABG84618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens ATCC 13124]
          Length = 455

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 150/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K DR++  +      +  I        EP  YR + +  I     
Sbjct: 81  GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMEEPWRYRNKVQLPIGLING 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102
           ++    F  ++ + + ++  +    +   +  L  E +    + P           ++R 
Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +  + T++    +VT        + + +  ++    +   K  IQ I  + KT + L
Sbjct: 201 IMIRRGFTTNEVMVVLVTNGEKLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
             +    + ++ ++       +     SF Q N      +    L  A      ++ + Y
Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+          
Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
               + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L RDL+IL
Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNINAKKIVYVSCDPSTLGRDLAIL 424

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365
               +    +   D FP T H+E    L++K
Sbjct: 425 EENGYKTLEVQPVDMFPNTSHVENVAKLIKK 455


>gi|229077678|ref|ZP_04210308.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
 gi|228705619|gb|EEL57975.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
          Length = 454

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 147/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L     + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKNAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|289422275|ref|ZP_06424129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           anaerobius 653-L]
 gi|289157326|gb|EFD05937.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           anaerobius 653-L]
          Length = 454

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 159/388 (40%), Gaps = 35/388 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ-VPNLQ----IFRSEPIHYRMRAEFHIWHDG 55
            G  + +  Y++QL  K + +R+ +     + +++    I    P  YR +A+F +  + 
Sbjct: 80  GGCQIQELDYKKQLELKTNIVREDLRRIGGLEDVEVLDAIGMENPFRYRNKAQFPVRLEN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGS-------LLINALMIEMMATIRLEPLLRAKLFQID 108
             +    + +++ + + +D  +           +I   + E   +I  E      L  I 
Sbjct: 140 GKVKIGFYKKKSHDIIDVDKCVIQDVKNDEIIEIIRDYIAEENISIYDEKSHSGVLRHIV 199

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-- 165
                 S Q +V L+          +   +L++++      +  I +   T + L R   
Sbjct: 200 TKCGFTSGQVMVVLVATEDRFKNIDKLVGKLKESIEGFTSLVVNINKDR-TNVILGRKNI 258

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
             + D ++      L +     SF Q N      +    L      +GD + ++YCG G+
Sbjct: 259 NKFGDGKIVDNIGDLKFEISPLSFFQVNPVQTEVLYNKALEFADLKEGDRVFDVYCGIGS 318

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+  + V  VEI + +++ A  N   N ++N++     ++E              
Sbjct: 319 ISLFLAQKAEFVYGVEIVEDAIKDAMINAKLNGMDNLEFFVGKAEEVV------------ 366

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339
            +I     R   + VDPPR G D+  +  +       ++Y+SCNP +L RDL  L    +
Sbjct: 367 PEIYKQGKRANVVVVDPPRKGCDEKVLDTIVEMEPERVVYVSCNPSTLARDLRYLEDRGY 426

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367
             E++   D F ++ H+EC  L+ R  S
Sbjct: 427 RCEKVQPVDLFAHSVHVECIALIQRVKS 454


>gi|225571369|ref|ZP_03780365.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM
           15053]
 gi|225159845|gb|EEG72464.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM
           15053]
          Length = 475

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 155/398 (38%), Gaps = 45/398 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---------FRSEPIHYRMRAEFHIW 52
              +    Y +QL  K +++R  ++       ++            EP  YR +A+F + 
Sbjct: 83  GCQIQAMSYARQLEYKNEKVRNNLIRLGGVPQELLDEVMEPVCGMEEPYRYRNKAQFPVG 142

Query: 53  HDG-DDLYHIMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEP--------LL 100
            D   ++    +  +T + +       G   +  I  ++I  M    L P        L+
Sbjct: 143 TDREGNIITGFYAGRTHQIIPHMDCAIGRAENKEILNIIISFMKEFGLSPYDETSHKGLI 202

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANK 157
           R  L +  Y T +    IV         D   E    +       ++   +   +    +
Sbjct: 203 RHILIRTGYRTGEIMVCIVINGNGIPHGDTLAERLAEIPGMTSVTYSVNREKTNVIMGRE 262

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
             +   + Y+ + +      + Y+    SF Q N      + E  L    G+ GD  + +
Sbjct: 263 AGLLWGQAYITDYIG----DIKYQISPLSFYQVNPVQTERLYETALE-YAGLHGDETVWD 317

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G  SL LA+    V  VEI   ++E A+ N   N + N +     +++       
Sbjct: 318 LYCGIGTISLFLAQKAKHVYGVEIVPQAIEDAKKNAQINGIENARFYVGKAEDVLP---- 373

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333
                  +  +        I VDPPR G +++ +  MV+  P  I+Y+SC+  +L RD+ 
Sbjct: 374 -------EKYENDGIHADIIVVDPPRKGCEESVLHTMVKMQPERIVYVSCDSATLARDVK 426

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
            L  + + ++R+   D FP+T H E   LL +  S  H
Sbjct: 427 YLRGSGYEVKRVKGVDMFPHTGHTEVVCLLSKLKSSKH 464


>gi|30260591|ref|NP_842968.1| RNA methyltransferase [Bacillus anthracis str. Ames]
 gi|47525703|ref|YP_017052.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183442|ref|YP_026694.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
 gi|65317856|ref|ZP_00390815.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Bacillus anthracis str.
           A2012]
 gi|165870726|ref|ZP_02215379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
 gi|167634708|ref|ZP_02393027.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
 gi|167641292|ref|ZP_02399545.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
 gi|170688986|ref|ZP_02880187.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
 gi|170707136|ref|ZP_02897592.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
 gi|177654527|ref|ZP_02936383.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
 gi|190567598|ref|ZP_03020511.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813100|ref|YP_002813109.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
           684]
 gi|229603797|ref|YP_002865038.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
 gi|254686816|ref|ZP_05150674.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724890|ref|ZP_05186673.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           A1055]
 gi|254738958|ref|ZP_05196660.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254744546|ref|ZP_05202225.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Kruger B]
 gi|254756196|ref|ZP_05208225.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Vollum]
 gi|254762015|ref|ZP_05213864.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
           Australia 94]
 gi|50401539|sp|Q81Z48|Y426_BACAN RecName: Full=Uncharacterized RNA methyltransferase
           BA_0426/GBAA_0426/BAS0414
 gi|30253959|gb|AAP24454.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames]
 gi|47500851|gb|AAT29527.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177369|gb|AAT52745.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne]
 gi|164713560|gb|EDR19084.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
 gi|167510800|gb|EDR86193.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
 gi|167529782|gb|EDR92530.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
 gi|170127914|gb|EDS96785.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
 gi|170667087|gb|EDT17849.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
 gi|172080639|gb|EDT65722.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
 gi|190561385|gb|EDV15357.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
 gi|227004638|gb|ACP14381.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
           684]
 gi|229268205|gb|ACQ49842.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
          Length = 459

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 157/384 (40%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V L  K
Sbjct: 436 EYVQPVDMFPHTAHVENVVKLTLK 459


>gi|253578497|ref|ZP_04855769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850815|gb|EES78773.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 386

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 149/376 (39%), Gaps = 34/376 (9%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH-IMFDQQT 67
            Y++QLA K  R+++++  F      I   +P +YR +       D         ++ +T
Sbjct: 23  PYKEQLAAKQKRMKKLLGKFANVKPIIGMDDPFYYRNKVHAVFDRDKKGNIICGTYEAKT 82

Query: 68  KERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            + + I+  M    +   +            I+         LLR  L +  + T   D+
Sbjct: 83  HKVVPIEECMIEDKISQEIIRTIRDMLKSFRIKTYDEDTGYGLLRHVLVRRGFFT---DE 139

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTV 173
            +V ++    +  +       LR         +  +     + +  +RD   Y    +  
Sbjct: 140 IMVVIVIGSPIFPSKNNFVKALRKKYPQITTVVLNVNDKKTSMVLGERDIVIYGKGYIRD 199

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFD 232
                 +R    SF Q N      + +  +  A  G +  +++ YCG G   LV A+   
Sbjct: 200 TLCGCTFRISPQSFYQVNPVQTEILYKTAIEYAGLGRKETVIDAYCGIGTIGLVAAKRAK 259

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE+   +V  AR N   N + N +  +  + EF + M              +    
Sbjct: 260 NVIGVELNPDAVRDARINAKENKITNARFYQGDAGEFMENMAE------------NGEHA 307

Query: 293 KTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             +F+DPPR+G D   +  +++  P  I+YISC P++L RDL  L+   + + ++   D 
Sbjct: 308 DVVFMDPPRTGSDKKFMSSVIKLNPSRIVYISCGPETLARDLEYLTKHGYDVRKIQPVDM 367

Query: 350 FPYTRHMECGVLLVRK 365
           F +T H E   LL +K
Sbjct: 368 FSFTDHCENICLLTKK 383


>gi|229188589|ref|ZP_04315628.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
 gi|228594778|gb|EEK52558.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
          Length = 454

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 148/386 (38%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLSYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMQNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDILIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L   + + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKKAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N A N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|167767439|ref|ZP_02439492.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1]
 gi|167710731|gb|EDS21310.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1]
 gi|291558726|emb|CBL37526.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
           SSC/2]
          Length = 457

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 92/393 (23%), Positives = 161/393 (40%), Gaps = 45/393 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
             TL    YE+QL  K ++++  +                +   EP +YR +A+F + +D
Sbjct: 81  GCTLQHLAYEKQLEYKFNKVKNCLERIGGLENIEEKMEPILGMEEPFYYRNKAQFPVGYD 140

Query: 55  G-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRA 102
              +L    +  +T   +   + M    +   ++++++  ++              L+R 
Sbjct: 141 KEGNLITGFYAGRTHHIIDCTHCMIQHPVNEQILLKVLDYMKKNNITAYDEKTHKGLVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK--YQIQLIGRANKTKI 160
            + ++ + T +    +V     + L +        L D+L   +    I +     KT  
Sbjct: 201 IVTRVGFKTGEIMVCLVVNGSKKNLRNLEM-----LIDSLTEVEGMTSICVNINKEKTNR 255

Query: 161 CLD----RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215
            L       Y    +      + Y+    SF Q N      + E  +  A    +  + +
Sbjct: 256 ILGSKIEEVYGKPYIYDYIGNVKYQIGPLSFFQVNPTQTKVLYEKAMEYADLKGEETVWD 315

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G  SL LA+   +V  VEI K +++ AR N   N  +N +     ++E      R
Sbjct: 316 LYCGIGTISLFLAQKAKKVYGVEIVKEAIDDARLNAKMNGFDNAEFFVGKAEEVLP---R 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333
           E E N             TI VDPPR G D   +  +   A   I+Y+SC+P +L RDL 
Sbjct: 373 EYEKN--------GVYADTIVVDPPRKGCDSKLLETMVKMAPKRIVYVSCDPATLARDLK 424

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +LS   + +E++   DQF ++ H+E  V L RK
Sbjct: 425 VLSEQGYEVEKVCAVDQFSHSSHVETVVRLKRK 457


>gi|323484127|ref|ZP_08089497.1| hypothetical protein HMPREF9474_01248 [Clostridium symbiosum
           WAL-14163]
 gi|323402569|gb|EGA94897.1| hypothetical protein HMPREF9474_01248 [Clostridium symbiosum
           WAL-14163]
          Length = 575

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 88/388 (22%), Positives = 146/388 (37%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60
              LL   Y+QQLAEK  R+ +++         I   EP+HYR +      HD   +   
Sbjct: 207 GCQLLHLPYKQQLAEKQKRMEELLKGICPVKPIIGMKEPLHYRNKVHAVFGHDRKGNPLS 266

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109
            ++ + T   + ++  +      + ++  +   ++   +           LR  L +  +
Sbjct: 267 GVYKEGTHILVPVEKCLIEDEKADEIIGTIRGMLKSFKIRTFDEDTGYGFLRHVLVRRGF 326

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
            T +    +VT      +  +       LR+        IQ I          +K  +  
Sbjct: 327 ATGEIMVVLVTA---SPVFPSKNNFVKALREKHPEITTIIQNINNRSTSMVLGDKEHVLY 383

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            R Y+++ L      L +R    SF Q N+     +    L  A    +   L+ YCG G
Sbjct: 384 GRGYIEDVLC----GLRFRISSKSFYQVNSAQTELLYNKALQLAGLTGKEKALDAYCGIG 439

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L+ +R    V+ VE+   +V  A  N   N V N++     +  F   M        
Sbjct: 440 TIGLIASRKAGEVIGVELNPDAVRDAVQNAKMNDVKNIQFYCNDAGRFIVNMAE------ 493

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTT 338
                    +   I +DPPRSG     +  V       ++Y+SC P++L RDL   +   
Sbjct: 494 ------KGEKVDVILMDPPRSGSTKEFIDAVAKMGPERVVYVSCGPETLVRDLRWFMGNG 547

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366
           +        D F  T H+E  VLLVRKP
Sbjct: 548 YRAVEAWPVDMFGGTGHVETAVLLVRKP 575


>gi|307265883|ref|ZP_07547432.1| RNA methyltransferase, TrmA family [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919052|gb|EFN49277.1| RNA methyltransferase, TrmA family [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 455

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 146/384 (38%), Gaps = 40/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWH-DGD 56
             +L    YE QL  K  +++  +          +  I   +P  YR +A+F +   +G 
Sbjct: 82  GCSLQHLSYEGQLKYKTQKVKDNLERIGKVYTRVHDTIGMEKPQRYRNKAQFPVGMVEGK 141

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLF 105
                 +  ++ + + ++  M    +           I    I +      + L+R  + 
Sbjct: 142 AAVTGFYAPRSHDIVPVESCMIQHEISDEIARIVRNWIRKYNISVYDEKTGKGLIRHIVT 201

Query: 106 QIDYLTSQSDQAIVTLI----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           ++ + T +    IV       Y + L DA +E    L+  +     +   +    +    
Sbjct: 202 RVAFKTGEVMAVIVINGKDIQYKKQLIDALKEEIRGLKSVVININTKKTNVIMGEENITI 261

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              D + + +    + + +     SF Q N      +    L  A    +  ++++YCG 
Sbjct: 262 YGSDNIIDYI----KDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETVIDVYCGI 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL  A+    V  +E    +VE A+ N   N + NV+ +   +++            
Sbjct: 318 GTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGDAEKV----------- 366

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
            + ++     +   + +DPPR G D + +  V       I+Y+SCNP +L RDL  L   
Sbjct: 367 -MPELADKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRYLEDN 425

Query: 338 THTIERLALFDQFPYTRHMECGVL 361
            +    +   D FPYT H+E   L
Sbjct: 426 GYKTMEVQPVDMFPYTHHVESVAL 449


>gi|296330132|ref|ZP_06872614.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673376|ref|YP_003865048.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152721|gb|EFG93588.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411620|gb|ADM36739.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 459

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 143/388 (36%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K  +++ ++             +  +   +P +YR +A+  +   
Sbjct: 85  GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNKAQVPVGER 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              L    + Q++ + + +   +               +     ++     R +  LR  
Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERHKGWLRHI 204

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +   +T    + ++  I          +    +       K  +Q I   NKT +   
Sbjct: 205 MVRYGVVTG---EMMIVFITKTNDFPHKAKIIEDITAQFPHVKSIVQNINP-NKTNVIFG 260

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
            D    + +E +      + +     SF Q N      + +  L  A    +  +++ YC
Sbjct: 261 NDTNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEYAELKGEETVIDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++        E  
Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                          T+ VDPPR G D+  +  +       ++Y+SCNP +L RDL +L 
Sbjct: 379 ----------GITADTLVVDPPRKGCDETLLRTIVEMKPKRVVYVSCNPGTLARDLRVLE 428

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLV 363
              +T   +   D FP+T H+EC  +L 
Sbjct: 429 DGGYTTLEVQPVDMFPHTNHVECVAVLK 456


>gi|255657938|ref|ZP_05403347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida
           DSM 20544]
 gi|260850131|gb|EEX70138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida
           DSM 20544]
          Length = 457

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 140/386 (36%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K  ++   +              +    P +YR + +F I     
Sbjct: 85  GCQLQHLDYMAQLKAKRQQVIDAVTRIGGQKDLFVEPTLGAESPWNYRNKMQFPIGRCKG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPG----SLLINA---LMIEMMATIRLEPLLRAKLFQIDY 109
                 F Q T E +            + ++NA   ++ E+   +  E      L  +  
Sbjct: 145 KTVIGCFAQGTHEIIDTRDCHIQKEGNNEIVNAVRDIITELRIPVYNEDRHTGVLRHVVG 204

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTKICL 162
              +  + +V ++         +E    LR  L       Q        +    +T +  
Sbjct: 205 RVGEKGELMVVIVTATKQLPREKEFVKALRKRLPHVVSIHQNIQTYRNNVIMGRETNLLW 264

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            +  + +R+      L +     SF Q N      +    L  A    +  +++ YCG G
Sbjct: 265 GKPTILDRIGR----LTFHISPRSFFQVNTKQAEVLYNKALEFANLKGEETVIDAYCGTG 320

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L LA+    V  +EI KP++  A+ N   N+V N + +   + E    + +      
Sbjct: 321 TITLFLAQKAREVYGIEIVKPAILDAQKNARDNNVRNAEFIVGDATEVMPRLYK------ 374

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338
                    R   + VDPPR+G  +  +          I+Y+SCNP SL RDL++L    
Sbjct: 375 ------QGVRADVVVVDPPRAGCTETVLKTFANMQPDRIVYVSCNPASLARDLAVLEQLG 428

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +  +++   D FP T H+E   L+ +
Sbjct: 429 YKAKKVQPVDMFPMTSHVETVALIEK 454


>gi|326391815|ref|ZP_08213332.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992144|gb|EGD50619.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 455

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 147/384 (38%), Gaps = 40/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWH-DGD 56
             +L    YE QL  K  +++  +          +  I   +P  YR +A+F +   +G 
Sbjct: 82  GCSLQHLSYEGQLKYKTQKVKDNLERIGKVYTRVHDTIGMEKPQRYRNKAQFPVGMVEGK 141

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLF 105
                 +  ++ + + ++  M    +           I    I +      + L+R  + 
Sbjct: 142 AAVTGFYAPRSHDIVPVESCMIQHEISDEIARIVRNWIRKYNISVYDEKTGKGLIRHIVT 201

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           ++ + T +    IV     + Y + L DA +E    L+  +     +   +    +    
Sbjct: 202 RVAFKTGEVMAVIVINGKDIPYKKQLIDALKEEIRGLKSVVININTKKTNVIMGEENITI 261

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              D + + +    + + +     SF Q N      +    L  A    +  ++++YCG 
Sbjct: 262 YGSDNIIDYI----KDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETVIDVYCGI 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL  A+    V  +E    +VE A+ N   N + NV+ +   +++            
Sbjct: 318 GTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISGDAEKV----------- 366

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
            + ++     +   + +DPPR G D + +  V       I+Y+SCNP +L RDL  L   
Sbjct: 367 -MPELADKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRYLEDN 425

Query: 338 THTIERLALFDQFPYTRHMECGVL 361
            +    +   D FPYT H+E   L
Sbjct: 426 GYKTMEVQPVDMFPYTSHVESVAL 449


>gi|295400601|ref|ZP_06810579.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294977504|gb|EFG53104.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 458

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 153/393 (38%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    YE QL EK D + Q +       ++       I   +P HYR +++F +   
Sbjct: 86  GCQLQHLDYEAQLREKRDIVIQALERHCRLPVETLEIRPTIGMEDPWHYRNKSQFQVGMK 145

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAK 103
             ++   ++   + + + I   +      N            L I +        L+R  
Sbjct: 146 KGEVIAGLYGLNSHQLIDISECLIQHPATNRVTNMVKMILQDLRIPIYNERTQTGLVRTI 205

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++ + T      ++T        +        ++  L   K  +Q I    KT +   
Sbjct: 206 VARVGFRTGDVQLVLITAKKEIPRKEL---LIAEIKRRLPEVKSIVQNIN-GQKTSLIFG 261

Query: 164 RD--------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214
            +        Y+ E L      L +     +F Q N    V + + V  AA       ++
Sbjct: 262 EESLLLEGEEYIQEVLG----DLSFELSARAFFQLNPVQTVKLYDEVKKAAALTGTEKVV 317

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G   L LA+    +  +++   ++E A+ N   +   N   V   ++       
Sbjct: 318 DAYCGVGTIGLWLAKDAGEIRGMDVIPEAIEDAKKNAKKHGFANATYVSGKAEALLPKWV 377

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
           +E             ++   I VDPPR+G D+  +  +       I+Y+SCNP SL RD+
Sbjct: 378 KE------------GWKPDVIVVDPPRTGCDEQLLKTILKVKPQRIVYVSCNPSSLARDI 425

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +LS  + ++ +   D FP+T H+EC VLLV+K
Sbjct: 426 DVLSKFYKVDYIQPVDMFPHTAHVECCVLLVKK 458


>gi|226310296|ref|YP_002770190.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
           100599]
 gi|226093244|dbj|BAH41686.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus
           brevis NBRC 100599]
          Length = 485

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 142/391 (36%), Gaps = 44/391 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----------VPNLQIFRSEPIHYRMRAEFHI 51
             +L    YE+QL  K   +R  +                +  +  S+P  YR +A+  I
Sbjct: 101 GCSLQHLAYEEQLRHKQQIVRDNLRRIGGFQVEGEGAITVHPTLGMSDPWRYRNKAQVPI 160

Query: 52  WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLL 100
             +   L    + +++   + ++  +    + +            L I     +R   LL
Sbjct: 161 GEENGALVGGFYAEKSHSIIDMNECLIQHQVNDEAVAVVKQAATKLNITAYDEVRHSGLL 220

Query: 101 RAKLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
           R  + ++   T +    +VT    +     L +A       +   +         +    
Sbjct: 221 RHVVVKVGVKTGEVMVVLVTTEEQIPQRDQLVEAICTQVAGVTSIVQNINPDKTNVIFGK 280

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLE 215
           KT      D + + +      + +     SF Q N      +    L          +++
Sbjct: 281 KTVTLWGSDVIYDYIG----PIKFAISARSFYQVNPAQTEVLYNKTLEYAGATGTETVID 336

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  SL LA+    V  VEI   ++  A  N   N V N       ++    A + 
Sbjct: 337 AYCGIGTISLFLAQKSKHVYGVEIVPEAIADANRNAQLNGVENATFEAGPAEVVIPAWKE 396

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          R   I VDPPR G D+A +  +       ++Y+SCNP +L RDL 
Sbjct: 397 ------------KGIRADVIVVDPPRKGCDEALLTTILEMQPERVVYVSCNPSTLARDLK 444

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L+  + ++ +   D FP+T H+E   +LVR
Sbjct: 445 VLAERYEVKEVQPVDMFPHTGHVESVAVLVR 475


>gi|314934062|ref|ZP_07841425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae
           C87]
 gi|313653173|gb|EFS16932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae
           C87]
          Length = 455

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 142/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG- 55
              L    Y+ QL  K +++  +               +   +P  YR +++  +  D  
Sbjct: 82  GCQLQHMTYQAQLDMKKEQVVNLFHRKGPFEDTPIQPTVGMEQPWRYRNKSQIPVGKDKE 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +      + Q++ + + +D  +                +N L I +        L+R  +
Sbjct: 142 NKAITGFYRQRSHDIIDMDSCLIQDEQHQKIMNHVKQWLNELNISIYNEKNQSGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        D   +  I     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMVIFVTNGKKFKNADVLVQKLISAYPNVTSIKQNINDTHSNVIMGRQSVT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D + ++L+     + +   + SF Q N+     + +  +   +    + +L+ YCG
Sbjct: 262 LYGKDKIVDQLS----EVTFNISDQSFYQINSAQTEKLYQQAIDYAQLTGEEIVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N +NN       +++     +     
Sbjct: 318 IGTIGLYMAPQAKHVYGVEVVPSAIKDAEENATKNQLNNTTFECGKAEDVILEWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      R   + VDPPR G D+  V  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIRPDVVMVDPPRKGCDETFVKTLLKLNPKRIVYISCNPSTQQRDAQLLAN 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            + +  +   D FP T H+E   L  RK +
Sbjct: 426 NYHLVEITPVDMFPQTTHIETVALFERKKN 455


>gi|319654336|ref|ZP_08008424.1| YefA protein [Bacillus sp. 2_A_57_CT2]
 gi|317394036|gb|EFV74786.1| YefA protein [Bacillus sp. 2_A_57_CT2]
          Length = 460

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 142/388 (36%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R ++              +   +P  YR +A+  I     
Sbjct: 86  GCQLQHLSYEGQLLAKEKQVRDVLERIGKLEGVKVHPVLGMKDPWRYRNKAQVPIGEQEG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105
            L    + Q+T + + +   +      + ++ ++                 +  LR  + 
Sbjct: 146 GLIGGFYQQRTHQIIDMKECLIQQEKNDEVVQKVKEICGRYGVRAYDEGRHKGELRHVMA 205

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +    +VT    L + + + +        ++  +H    +   +   + T++ 
Sbjct: 206 RYGLVTGEVMIVLVTRTNELPHKQRIVEEIASSIEGVKSIVHNVNSRKTNVIMGDVTRVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
                 +E +      + +     SF Q N      + +  L  A    +  +++ YCG 
Sbjct: 266 WG----EEVIYDFIGDIKFAISARSFYQVNPEQTKVLYDKALEYANLSGEEQVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+    V  VEI   ++E A+ N   N + N       ++E      +     
Sbjct: 322 GTISLFLAQKAKEVFGVEIVPEAIEDAKRNADLNGMTNASFAVGKAEEVIPDWYK----- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
                       + + VDPPR G D+A +  + +     ++Y+SCNP +L RDL IL   
Sbjct: 377 -------KGNTAEVLVVDPPRKGCDEALLKTILSMKPKKVVYVSCNPGTLARDLRILEDG 429

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +    +   D FP T H E    L  K
Sbjct: 430 GYRTIEVQPVDMFPQTMHCEAVAGLEWK 457


>gi|160878319|ref|YP_001557287.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160426985|gb|ABX40548.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
           ISDg]
          Length = 468

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 150/391 (38%), Gaps = 35/391 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIW-HDG 55
              +    YE+QL  K +++   +              +    P +YR +A+F +     
Sbjct: 85  GCQIQQLSYEEQLRYKQNKVLNCLKRIGGIENPPMEPIVGMENPYYYRNKAQFPVGKRTD 144

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104
            ++    +  +T   +       G      L+  +   ++ E            L+R  L
Sbjct: 145 GEVVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQENISIYDEESHQGLVRHIL 204

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-RKYQIQLIGRANKTKICLD 163
            ++ + T +    +V         D   +  +   +     R   I L     KT + L 
Sbjct: 205 LRVGFTTKELMICVVINGKELPASDKLIKQILACPNLPKDFRVTSICLNKNTKKTNVILG 264

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
            +    Y    +T     + Y+    SF Q N      + E  L  T     + + +LYC
Sbjct: 265 EEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELALDYTDLTGNELVWDLYC 324

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+    V  VEI   ++E A+ N   N +NN +    +++E      +   
Sbjct: 325 GIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEFFVGAAEEVLPKQYQ--- 381

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL- 335
                 +         I VDPPR G D++ +  + A     I+Y+SC+P +L RDL  L 
Sbjct: 382 ------LSGGKIYADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDPATLARDLKYLI 435

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
              + ++++   DQFP++ H+E   LL R+ 
Sbjct: 436 EHGYDLKKVRPVDQFPHSVHVESVTLLTRRN 466


>gi|57237672|ref|YP_178920.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni RM1221]
 gi|81557510|sp|Q5HUW5|TRMA_CAMJR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|57166476|gb|AAW35255.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni RM1221]
 gi|315058281|gb|ADT72610.1| tRNA (uracil-5-)-methyltransferase [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 357

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 133/352 (37%), Positives = 205/352 (58%), Gaps = 8/352 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   + ++F S+  HYR RAE   +H+ D L++ MFD + K++  I
Sbjct: 12  LDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTRAELSFYHENDTLFYAMFDPKNKKKYII 71

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
            Y       I   M +++  +R +  L+ KLF +++LT++ + + VTL+YH+ ++D  + 
Sbjct: 72  KYLDFADEKICTFMPKLLEYLRQDNKLKEKLFGVEFLTTKQELS-VTLLYHKNIED-IKS 129

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L + LH     I LI R+   K+    + + + L + GR + Y    + F QPN  
Sbjct: 130 NLENLSNILH-----INLIARSKGKKLIFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTT 184

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV        + DLLELYCG GNF+L LA  F +VLA EI+K ++  A  N  
Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E + A+++EREF RLKDI +  + F  + VDPPR+GLD + + ++
Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Y +I+YISCNP +L  +L  LS TH +E  ALFDQF  T H+ECGV L +
Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356


>gi|299820611|ref|ZP_07052501.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
 gi|299818106|gb|EFI85340.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
          Length = 460

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 154/383 (40%), Gaps = 35/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QLA K ++  Q M      ++++        P  YR +++  + +    
Sbjct: 90  GCSLQHLSYDGQLAFKQNQGAQNMKRIGKLDVEVKPTLGMEMPFRYRNKSQVPVGYVNGK 149

Query: 58  LYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
           +    + +++ + + +D  +           ++  L+ +       E   R  +  I   
Sbjct: 150 IQAGFYQKRSHDIIDMDTCLIHNRTGDDAVQIVRRLLEKYAIMPYQEETGRGDIRHIMTR 209

Query: 111 TSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165
             + S + ++ L+  R       E    ++  +      +Q I  A KT + +       
Sbjct: 210 YGKTSGELMIVLVTTRKKFPNLTELVADIQKEVPNIASIVQNINAA-KTNVIMGETTRTL 268

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223
           +  E +T     + +     SF Q N      + +  L A  G+ GD  +++ YCG G+ 
Sbjct: 269 WGKEMITDTIHGIHFAISAKSFYQVNPEQTEVLYQEALDA-AGLTGDEIVIDAYCGIGSI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA++   V  VEI   ++  A+ N   N ++NV      ++E      R        
Sbjct: 328 SLCLAKNAKHVYGVEIVPQAIIDAKANAQLNQLDNVTFETGKAEEVIPNWYR-------- 379

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   + VDPPR G D+  +  +       ++Y+SCNP +L RD+ IL +  +T
Sbjct: 380 ----SGIKADVLVVDPPRKGCDEKLLETIIDMKPKKVVYVSCNPATLARDMQILTAGGYT 435

Query: 341 IERLALFDQFPYTRHMECGVLLV 363
            + +   D FP T H+E   +L 
Sbjct: 436 AKTVQPVDMFPMTNHIEAVTVLE 458


>gi|169343089|ref|ZP_02864116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens C str. JGS1495]
 gi|169298999|gb|EDS81073.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens C str. JGS1495]
          Length = 455

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 150/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K +R++  +      +  I         P  YR + +  I     
Sbjct: 81  GCKLQHASYKAQLDFKWERVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102
           ++    F  ++ + + ++  +    +   +  L  E +    + P           ++R 
Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +  + T++    +VT   +    + + +  ++    +   K  IQ I  + KT + L
Sbjct: 201 IMIRRGFTTNEVMVVLVTNGENLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
             +    + ++ ++       +     SF Q N      +    L  A      ++ + Y
Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+          
Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
               + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L RDL +L
Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365
               +    +   D FP T H+E   LL++K
Sbjct: 425 EENGYKTLEVQPVDMFPNTAHIENVALLIKK 455


>gi|313632848|gb|EFR99799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
           N1-067]
          Length = 453

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 147/386 (38%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y  QLA K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYVGQLAFKRNQVEETMKRIGKLNVEVKETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++ E + +   +  S            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHEIIDMSTCLIQSEQGDFAVQKTREVLAKYGTEPYDEKTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +     Q   +   ++TK    
Sbjct: 204 FAHTTGQLMLVLVTTKDRLPFKEEIIRDLTEQLALTSIVQNINPQKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIEAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N+++N       ++E      +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLSNTTFETGKAEEVIPTWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ ILS   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDMKILSDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
               +   D FP T H+E   +L  K
Sbjct: 428 EANLVQPVDMFPMTTHIEAVTVLNLK 453


>gi|305432144|ref|ZP_07401310.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli JV20]
 gi|304444809|gb|EFM37456.1| tRNA (uracil-5-)-methyltransferase [Campylobacter coli JV20]
          Length = 362

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 131/351 (37%), Positives = 209/351 (59%), Gaps = 10/351 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           L EK   +++    F   N ++F S+  HYR RAE   +HD D++Y+ MF  + K+++ I
Sbjct: 12  LEEKASFIKEFFKDFYQGNFELFSSKDKHYRTRAELSFYHDKDEIYYAMF--ENKKKIII 69

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +        I A M +++  IR    L+ KLF +++L ++++ +  TL+YH+ ++  + +
Sbjct: 70  ESLEFADEKITAFMPKLLKQIRNNTNLKEKLFGVEFLATKNELS-TTLLYHKNIELIYND 128

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                     + +    LI R+   K+   ++ + + L + GR + Y    + F QPN  
Sbjct: 129 LNN------LSLELDANLIARSKGKKLVFKKENLRQELDIQGRKIFYEFNNDCFIQPNTS 182

Query: 194 INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+ WV        + DLLELYCG GNF+L LA  F+ VLA EI+K ++  A  N  
Sbjct: 183 INEKMITWVCENLKTQERKDLLELYCGYGNFTLALAIFFNNVLATEISKSNINFALLNCK 242

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+++N+   R+SS+E +QA+++EREF RLKDID+ ++ F  I VDPPR+GLD + + ++
Sbjct: 243 INNISNIHFTRLSSEELSQALKKEREFFRLKDIDLDNFNFSHILVDPPRAGLDKSVIDLI 302

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           + Y +I+YISCNP SL  +L  L+ TH +E+ ALFDQF  T H+ECG+LL 
Sbjct: 303 KNYENIIYISCNPISLKENLKELALTHKVEKFALFDQFVNTPHLECGILLK 353


>gi|304316267|ref|YP_003851412.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777769|gb|ADL68328.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 452

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 41/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57
             TL    Y+ QL  K   +   +      N  ++       P++YR +AE+ +  +  +
Sbjct: 82  GCTLQHLSYKGQLEFKKQVVDDSLSRIGKINTIVYDTIGMDNPLYYRDKAEYPVGIEDGN 141

Query: 58  LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106
           +    +  ++   + ID  M  S              N   I +        LLR  + +
Sbjct: 142 IKSGFYASKSHNIIAIDSCMIQSDYSIEAMKTVREWANNYKISIFDEKSGNGLLRYIITK 201

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICL 162
           + + T +    +V         D      ++    L+  +         +   ++  +  
Sbjct: 202 VGFSTKEVMVILVINGIDIPYKDELINTLKKNIKELKSVVLNINKSRSRLVMGSENIVIY 261

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
              Y+ + +        +     SF Q N      + E  L     ++GD  ++++YCG 
Sbjct: 262 GDGYITDYIGDK----KFEISPLSFFQVNPIQTKVLYEKALE-YADLKGDEIVIDVYCGI 316

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  S+  A++   V  +E+   +VE A+ N A N +NN   +   ++   + + +E    
Sbjct: 317 GTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAGKAEHVMKRLYKE---- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-T 337
                         I +DPPR GLD   V   V+  P  I+YISCNP +L RDL I    
Sbjct: 373 --------GLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLARDLRIFEDN 424

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  E++   D FPYT H+EC VL+ R
Sbjct: 425 GYKTEKVQPVDMFPYTYHVECVVLMSR 451


>gi|167039842|ref|YP_001662827.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
 gi|166854082|gb|ABY92491.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514]
          Length = 454

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 146/387 (37%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
             +     YE QL  K  +++  +      +   +  I   EP  YR +A+F +     +
Sbjct: 83  GCSFQHLSYEGQLKYKTQKVKDNLERIGKVYTKVHEIIGMKEPQRYRNKAQFPVGMLDGE 142

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
           +    +  ++ + + I+  M    +           I    + +      + L+R  + +
Sbjct: 143 VVTGFYAPRSHDIVPIESCMIQDEVSDYIARTIRNWIKKYNVSVYDEKAGKGLIRHIVTR 202

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
           + + T +    +V    H    +   +    L+  ++  K  +  I     T + +  D 
Sbjct: 203 VGFKTGEVMVILVVNGKHIPYKE---QLIDALKKEINGLKSVVLNINTKR-TNVIMGEDN 258

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
              Y  + +    + + +     SF Q N      +    L  A       ++++YCG G
Sbjct: 259 ITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGDETVIDVYCGIG 318

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL  A+    V  +E    +VE A+ N   N + NV+ +   +++             
Sbjct: 319 TISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKV------------ 366

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
           + ++     +   + +DPPR G D   +  +       I+Y+SCNP +L RDL  L    
Sbjct: 367 MPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRYLDDKG 426

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +    +   D FPYT H+E   L+  K
Sbjct: 427 YKTMEVQPVDMFPYTHHVESVCLITNK 453


>gi|300915331|ref|ZP_07132645.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
 gi|307724834|ref|YP_003904585.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513]
 gi|300888607|gb|EFK83755.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
 gi|307581895|gb|ADN55294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513]
          Length = 453

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 146/387 (37%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
             +     YE QL  K  +++  +      +   +  I   EP  YR +A+F +     +
Sbjct: 82  GCSFQHLSYEGQLKYKTQKVKDNLERIGKVYTKVHEIIGMKEPQRYRNKAQFPVGMLDGE 141

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
           +    +  ++ + + I+  M    +           I    + +      + L+R  + +
Sbjct: 142 VVTGFYAPRSHDIVPIESCMIQDEVSDYIARTIRNWIKKYNVSVYDEKAGKGLIRHIVTR 201

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
           + + T +    +V    H    +   +    L+  ++  K  +  I     T + +  D 
Sbjct: 202 VGFKTGEVMVILVVNGKHIPYKE---QLIDALKKEINGLKSVVLNINTKR-TNVIMGEDN 257

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
              Y  + +    + + +     SF Q N      +    L  A       ++++YCG G
Sbjct: 258 ITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGDETVIDVYCGIG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL  A+    V  +E    +VE A+ N   N + NV+ +   +++             
Sbjct: 318 TISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKV------------ 365

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
           + ++     +   + +DPPR G D   +  +       I+Y+SCNP +L RDL  L    
Sbjct: 366 MPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRYLDDKG 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +    +   D FPYT H+E   L+  K
Sbjct: 426 YKTMEVQPVDMFPYTHHVESVCLITNK 452


>gi|217964101|ref|YP_002349779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           HCC23]
 gi|290893407|ref|ZP_06556392.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|217333371|gb|ACK39165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           HCC23]
 gi|290557058|gb|EFD90587.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|307571331|emb|CAR84510.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
           monocytogenes L99]
          Length = 453

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 146/383 (38%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QLA K +++ + M      N+ +        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEKTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +   +     + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMLVLVTTKERMPFKNEIVQDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|284802195|ref|YP_003414060.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578]
 gi|284995337|ref|YP_003417105.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923]
 gi|284057757|gb|ADB68698.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578]
 gi|284060804|gb|ADB71743.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923]
          Length = 453

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QL  K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|172058513|ref|YP_001814973.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171991034|gb|ACB61956.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum
           255-15]
          Length = 454

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 154/389 (39%), Gaps = 39/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L    Y+ +L  K +R+R          + +       +P  YR +A+  +    + 
Sbjct: 82  GCQLQHLSYDAELKFKHNRVRDAFARLAGLEIPVHETMGMEDPWGYRNKAQVPVAFQSNK 141

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +DY +  +            ++  L +      +   ++R  + +
Sbjct: 142 LMAGFYQKRSHRIIDMDYCLIQNKENDDAIQAVRKVLADLKVPAYDEKKNSGVIRHIMAR 201

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             Y T++    +VT +  + L  A +     L+   +     IQ     ++T + L +  
Sbjct: 202 HGYHTNELMIVLVTKV--KQLRGADKIVEGILKAVPN--VTSIQQNINPDETNVILGKRN 257

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
              +    +      L Y    +SF Q N      +    L   +    + +++ YCG G
Sbjct: 258 IVLHGPSVIRDQIAGLTYEISPHSFFQVNPLQTEKLYGKALEYAQLTGDEIVVDAYCGIG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           + SL LA+    V  +E+   +++ AR N  AN ++NV     +++    A+ +      
Sbjct: 318 SISLSLAQKAKHVYGIEMVPQAIDDARRNAKANGIDNVSFEYGTAETVMPALVK------ 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338
                    +   I VDPPR G D+  +      A   I+Y+SCN  +  RD  +L+   
Sbjct: 372 ------GGIKPDVIVVDPPRKGCDEEFLRAAAEVAPKRIVYVSCNASTQARDAKLLAELG 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           + +  +   D FP+T H+E   L VR+ +
Sbjct: 426 YKLMEVTPVDMFPHTTHVESVALFVREEN 454


>gi|327535927|gb|AEA94761.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
           OG1RF]
          Length = 456

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSKKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|20808229|ref|NP_623400.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|50401766|sp|Q8R918|Y1812_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1812
 gi|20516825|gb|AAM25004.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 452

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 151/386 (39%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QL  K  +++  +      +   +  I    P++YR + +F +   G +
Sbjct: 82  GCSLQHLSYKGQLEYKTQKVKDNLERIGKIYTKVHYAIGMENPLNYRNKGQFVVGEIGRE 141

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                +   + E + +D  +    L           +N   I +    + + L+R  + +
Sbjct: 142 KITGFYSFHSHEIVPVDNCLIQHPLSNKVVSVVKEWLNECDISVYDRKKGKGLIRHVVAK 201

Query: 107 IDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           + + T +    IV     +     L +A +E    L+  +     +   +   NK  +  
Sbjct: 202 VAFKTGEVMAIIVINGEDIPCKEELIEALKEKVPGLKSVILNINTRRTKMILGNKNIVIY 261

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNG 221
            ++ +++ +    + L +     SF Q N      + +  +        ++ +++Y G G
Sbjct: 262 GKNTIEDFI----KDLRFEISPLSFFQVNPIQTEILYDKAIEYAGLTGKEVVIDVYSGIG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL  A+    V  +E  K +VE A  N   N V NVK +   ++     + +E     
Sbjct: 318 TISLFAAKKASFVYGIESVKEAVEDAEKNAQVNGVKNVKFIWGKAEREIAKLYKE----- 372

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TT 338
                    + + + VDPPR G D   +  +       I+Y+SCNP +L RDL  L    
Sbjct: 373 -------GVKAEVVIVDPPRDGCDKEVIRAIVGINPKRIVYVSCNPSTLARDLRYLEDAG 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +    +   D FPYT H+E   L+ R
Sbjct: 426 YRTVEVQPVDMFPYTYHVESVALVER 451


>gi|302390099|ref|YP_003825920.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani
           DSM 16646]
 gi|302200727|gb|ADL08297.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani
           DSM 16646]
          Length = 450

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 155/387 (40%), Gaps = 41/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QL  K  ++R  +         +F      +P  YR +A++ +      
Sbjct: 80  GCSLQHLSYKGQLEFKTQKVRDSLERIGRIYTTVFDTIGMEDPWKYRNKAQYPVGKKDYR 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                + +++ + + I+  +    L           +    + +   I  + L+R  + +
Sbjct: 140 PALGFYMKRSHDLVPIEGCLIQHELSWRAAEVVRDWMEKFRVSIYDEINHKGLIRHVVTR 199

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
           I    +++ + +V L+ +       RE    L   +   K  + L     KT + +  + 
Sbjct: 200 IG---AKTGEVMVVLVINGREVPHLRELLGALEKNVEGLK-SVYLNVNTKKTNVIMGDEN 255

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
              Y +  +      + +    NSF Q N  + V +L   +    G+ G+  +++ YCG 
Sbjct: 256 ILVYGEPHIIDFIGEIKFTLSPNSFFQVNP-VQVEVLYKKVMEYAGLTGEETVIDAYCGI 314

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +L LA     V  +E+   +V  AR N   N + NV+ +  +++E    +       
Sbjct: 315 GTITLFLAGKARMVYGIEVVPQAVMDARNNALLNGIENVEFIEGAAEEVMPQLVE----- 369

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-T 337
                     R   I +DPPR G D+  +        P ++Y+SCNP +L RDL  L   
Sbjct: 370 -------RGIRADVIVMDPPRRGCDEKLLDAAVKMNPPRMVYVSCNPATLARDLRYLEDR 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  E +   D FP+T H+EC  L+ +
Sbjct: 423 GYRTELVQPVDMFPFTHHVECVALIKK 449


>gi|253681766|ref|ZP_04862563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           D str. 1873]
 gi|253561478|gb|EES90930.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           D str. 1873]
          Length = 494

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 156/402 (38%), Gaps = 53/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI------------------FRSEPIHY 43
             ++    Y  QL  K +R++  +       + I                      P  Y
Sbjct: 109 GCSIQHFNYNAQLEFKRNRVKDCLERIGKLKVTIDNEQENSNKKSTILHDTLGMENPYRY 168

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-- 98
           R + +  +  +  ++    +  ++ + + ++       +   + +L  + M    ++P  
Sbjct: 169 RNKVQLPVGEENGEIKIGFYAPRSHDIIDMNICYIQDEVGDKVVSLAKQWMQKYNIKPYN 228

Query: 99  ------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
                 ++R  + +  + T++    IVT           +E    +   ++     +Q I
Sbjct: 229 EEKNTGIVRHVMIRRGFNTNEIMIVIVTRTNELP---HKKELIELILKNINGVTSIVQNI 285

Query: 153 GRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
               KT + L  +    Y  + ++       +     SF Q N      +    L     
Sbjct: 286 NT-KKTNVVLGLNNITLYGKDYISDYIGEFKFNISPLSFFQVNPIQTEVLYNKALEYAAL 344

Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +++ + YCG G  SL L+++  +V  VEI + +++ A+ N   N+V+NV+ +   S+
Sbjct: 345 TGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVEDAIKNAKINAKENNVDNVEFIVGKSE 404

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325
           E    + +               +   + VDPPR G D A +  +       I+Y+SC+P
Sbjct: 405 EVIPNLIK------------QGIKADVVVVDPPRKGCDKALLDAIGNMRPDRIVYVSCDP 452

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
            +L RDL+IL    +  + +   D FP T H+E  VLL +K 
Sbjct: 453 GTLARDLAILDELGYETKEVQPVDMFPQTGHVENVVLLTKKN 494


>gi|331268633|ref|YP_004395125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           BKT015925]
 gi|329125183|gb|AEB75128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           BKT015925]
          Length = 495

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 154/400 (38%), Gaps = 55/400 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--------------------IFRSEPI 41
             ++    Y+ QL  K +R++  +       +                     +    P 
Sbjct: 109 GCSIQHFNYDAQLEFKKNRVKDCLERIGKLQVITKEEKNISYLDNKLAILHDTLGMQNPY 168

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP 98
            YR + +  +  +  ++    +  ++   + +D       +   + +L  E M    ++P
Sbjct: 169 RYRNKVQLPVGEENGEIKIGFYAPRSHNIIDMDICYIQDEVGDTVVSLTREWMEKYNIKP 228

Query: 99  --------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
                   ++R  + +  + T++    IVT        +   E  ++  D + +    I 
Sbjct: 229 YNEEKNVGIVRHIMIRRGFNTNEVMVVIVTRTNELPHKEELIELILKNIDGVTSIVQNIN 288

Query: 151 LIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
               + KT + L  +    Y  E ++       +     SF Q N      +    L   
Sbjct: 289 ----SKKTNVVLGLNNITLYGKEYISDYIGEFKFNISPLSFFQVNPIQTEVLYNKALEYA 344

Query: 207 KGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                +++ + YCG G  SL L+++  +V  VEI + ++E A+ N   N+VNN + +   
Sbjct: 345 ALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVEDAIENAKINAKENNVNNAEFIVGK 404

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323
           S+E    + +               +   + VDPPR G D + +  +       I+Y+SC
Sbjct: 405 SEEVIPNLIK------------QGIKADVVVVDPPRKGCDKSLLDAIGNMKPDRIVYVSC 452

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           +P +L RDL+IL    +  + +   D FP T H+E  VLL
Sbjct: 453 DPGTLARDLAILDELGYETKEVQPVDMFPQTGHVENVVLL 492


>gi|167747772|ref|ZP_02419899.1| hypothetical protein ANACAC_02493 [Anaerostipes caccae DSM 14662]
 gi|167653134|gb|EDR97263.1| hypothetical protein ANACAC_02493 [Anaerostipes caccae DSM 14662]
          Length = 459

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/393 (23%), Positives = 157/393 (39%), Gaps = 45/393 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWH- 53
             TL    YE+QL  K ++++  +                    EP +YR +A+F +   
Sbjct: 81  GCTLQHLSYEKQLEYKFNKVKNCLERIGGIENAGSFMEPIYGMDEPYYYRNKAQFPVGRN 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRA 102
               L    +  +T   +   +      +   ++ +++  +               L+R 
Sbjct: 141 KAGKLITGFYAGRTHSIIDCTHCSIQHPVNEEILKKVLDYMERNHVEPYDEKNHRGLVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD------ALHARKYQIQLIGRAN 156
            + ++ ++T +    +V     + L     E    L++             +       +
Sbjct: 201 IMTRVGFVTGEIMVCLVVNGRKKEL-PNLSELVESLKEVEGMTSICVNSNRERTNRIMGS 259

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215
           K +      Y+ + +      + Y+    SF Q N      + E  L        + + +
Sbjct: 260 KVEEVYGPAYIYDYIG----NVKYQIGPLSFFQVNPRQTKVLYEKALEYAGLCGDETVWD 315

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G  SL LA+   +V  VEI K ++E AR N   N ++NVK     ++E      R
Sbjct: 316 LYCGIGTISLFLAQKAKQVYGVEIVKEAIEDARLNARMNRMDNVKFFVGKAEEVLP---R 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333
           E E N              I VDPPR G D A +  MV+  P  I+Y+SC+P +L RDL 
Sbjct: 373 EYEKN--------GVYADVIVVDPPRKGCDKALLDTMVKMGPERIVYVSCDPGTLARDLK 424

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +L    + + ++A+ DQF +T H+E   LL RK
Sbjct: 425 VLGGEGYEVRKVAVVDQFGHTGHVETVALLKRK 457


>gi|257416880|ref|ZP_05593874.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           AR01/DG]
 gi|257158708|gb|EEU88668.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           ARO1/DG]
          Length = 456

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSKKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|226310579|ref|YP_002770473.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
           100599]
 gi|226093527|dbj|BAH41969.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus
           brevis NBRC 100599]
          Length = 460

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 143/387 (36%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             +L    Y  QLA K + + + +  +           I    P  YR +A+F +  +  
Sbjct: 90  GCSLQHMDYAAQLASKQEIVIESLRKYARLNQPPVAPTIGMDNPWSYRNKAQFQVGKEKG 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L   ++   + + + ++                  +I  L I +    +   ++R  + 
Sbjct: 150 KLIAGLYQTGSHKLVNLEGCQVQHEATTKIVQTAKQIIEELGIPIYDEKKRTGVIRTIVA 209

Query: 106 QIDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           ++ + T ++   +VT        + L    R     L         Q   +   +KT   
Sbjct: 210 RVAFATGETQLTLVTATPEIPRVKELLLELRTRLPELVGIAQNVNNQKTSLVFGDKTVSL 269

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
             +  + E+L      L +     +F Q N      + + V  A      + +L+LYCG 
Sbjct: 270 WGKASIAEKLG----ELSFDLSARAFFQLNPEQTQKLYKQVKTAAGLTGKELVLDLYCGT 325

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L LA +   V  +E+   +VE A  N   N   N       ++       +     
Sbjct: 326 GTIGLWLAPYAREVRGIELIPEAVEDANRNAERNQAANASFHVGRAEVLMPKWAK----- 380

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                     R   + VDPPR+GLDDA +  +       I+Y+SCNP +L +D+  L   
Sbjct: 381 -------QGTRPDVVVVDPPRTGLDDALIRSLLDVLPKKIVYVSCNPSTLAKDVGKLMQR 433

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T H+E   LL  K
Sbjct: 434 YELVSVQPVDMFPHTAHVESVTLLTLK 460


>gi|153811014|ref|ZP_01963682.1| hypothetical protein RUMOBE_01405 [Ruminococcus obeum ATCC 29174]
 gi|149832902|gb|EDM87985.1| hypothetical protein RUMOBE_01405 [Ruminococcus obeum ATCC 29174]
          Length = 456

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 144/391 (36%), Gaps = 45/391 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
              L    YE+Q   K  +LR  +              I   EP HYR +A+F +  +  
Sbjct: 81  GCQLQAVSYEEQKVFKEKKLRGHLERIGGFTNLPMEPLIGMDEPYHYRNKAQFPVGRNKE 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
             +    +  +T   +       G              +    I        + L+R   
Sbjct: 141 GKIVTGFYAGRTHAIIENRDCALGIPENKDVLDRVIAHMEKYNIAPYDEATGKGLVRHIF 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ------LIGRANKT 158
            +  + T    + +V LI +       RE   +L +        +        +   +K 
Sbjct: 201 VRYGFFTG---ELMVCLIINGQDLPHQRELVEKLCEIPGMTSISLNMNKKRSNVILGDKV 257

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
           K     DY+ +++      + Y     SF Q N      +    L  A    +  + +LY
Sbjct: 258 KTIWGEDYITDKIG----DISYEISPLSFFQVNPKQTWKLYSKALEYADLHGEETVWDLY 313

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  SL LA+    V  VEI   ++E AR N   N + NV+     ++E   A     
Sbjct: 314 CGIGTISLFLAQKAKFVRGVEIVPAAIEDARRNAKLNDIGNVEFFVGKAEEVLPA----- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                 + + +      I VDPPR G D+  +  +       ++Y+SC+  +L RDL  L
Sbjct: 369 ------EYEKNGVYADVIVVDPPRKGCDEMLLKTILKMQPKRVVYVSCDSATLARDLRFL 422

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
               + ++++   DQFP T H+E   LL +K
Sbjct: 423 CDNGYELKKVCGVDQFPQTVHVETVCLLSKK 453


>gi|330839061|ref|YP_004413641.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
           35185]
 gi|329746825|gb|AEC00182.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
           35185]
          Length = 458

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 149/390 (38%), Gaps = 47/390 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K  ++   +     +  +++       EP  YR + +F +     
Sbjct: 85  GCQLQHLSYGGQLHWKRQQVVDAVERIGGLSGIEVLPVLGAKEPWLYRNKMQFPVGKKRG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105
                 F + + + +                     ++  L I +    R   +LR  + 
Sbjct: 145 KTVIGCFAKGSHDIIDTRDCRIQKDGNNTIVNVMREIVERLHIPVYDEDRHTGVLRHIVG 204

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKT 158
           +I     ++ +A+V L+         +E    LR+ +   K   Q I           +T
Sbjct: 205 RI----GENGEAMVVLVTATKDLPKAKEITRLLRERVPNLKSVQQNIQTYRNNVILGRET 260

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
           K+   +  + +R+      L +     SF Q N      + E  L  A    +  +++ Y
Sbjct: 261 KLLWGKPTIPDRIGR----LRFSISARSFFQVNTEQAAVLYEKALEYADLSGKETVIDAY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L LA+   RV  +EI KP++E A+ N   NH+ N   +   + E    +  E 
Sbjct: 317 CGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLVGDATELMPRLCHEN 376

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL 335
                        R   I VDPPR+G  +  +          I+Y+SCNP +L RDL+IL
Sbjct: 377 ------------IRPHVIVVDPPRAGCTETVLKTFAGMRPDRIVYVSCNPATLARDLAIL 424

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +   ++   +   D FP T H+E    L+R
Sbjct: 425 AKLGYSAREIQPVDMFPQTSHVEAVTKLIR 454


>gi|228963568|ref|ZP_04124721.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228796086|gb|EEM43541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 459

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 157/384 (40%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    + + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAAALTGDEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V L  K
Sbjct: 436 EYVQPVDMFPHTAHVENVVRLKLK 459


>gi|210613367|ref|ZP_03289687.1| hypothetical protein CLONEX_01894 [Clostridium nexile DSM 1787]
 gi|210151209|gb|EEA82217.1| hypothetical protein CLONEX_01894 [Clostridium nexile DSM 1787]
          Length = 464

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 150/395 (37%), Gaps = 39/395 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51
            G  + +  YE+QL  K  ++R  +             V        EP +YR +A+F  
Sbjct: 78  GGCQIQELSYEKQLEFKEKKVRGNLERIGGFAPEELDEVMEPICGMEEPFYYRNKAQFPF 137

Query: 52  WHDGDD-LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99
             D    +    +  +T + +       G              +N   I        E L
Sbjct: 138 GTDKQGHIVTGFYAGRTHQIIPNTECALGVKQNREILEMIVDFMNIHHITTYDETTGEGL 197

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRAN 156
           LR  L +  + T +    ++    +    +   +    +            +   +    
Sbjct: 198 LRHVLIRYGFRTGEIMVCLIINGDNFPKSEKLVDNLREIPGMTSITLNVNRERTNVILGR 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214
           + K+   + Y+ + +      + Y+    SF Q N     ++    L    G+ G+  + 
Sbjct: 258 EIKVLWGQAYITDYIG----NVKYQISPLSFYQVNPVQTENLYGQALE-YAGLHGNETVW 312

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E A+ N A N + N +     S+E      
Sbjct: 313 DLYCGIGTISLFLAQKAKQVYGVEIIPQAIEDAKRNAALNGIENAQFFVGKSEEVLPQYY 372

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332
                N  K+          I VDPPR G D+  +  M+Q  P  I+Y+SC+  +L RDL
Sbjct: 373 E----NYAKEHGGEKAYADVIVVDPPRKGCDETLLETMIQMQPERIVYVSCDSATLARDL 428

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
             L    + ++R+   D F  T H+E  VLL RK 
Sbjct: 429 KYLCENGYELKRVRAVDMFANTVHVETVVLLQRKN 463


>gi|315162126|gb|EFU06143.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0645]
 gi|315168692|gb|EFU12709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1341]
          Length = 456

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSKKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|303229651|ref|ZP_07316439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515776|gb|EFL57730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 576

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 149/390 (38%), Gaps = 36/390 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL+ K  +++ ++              +   EP  YR + +  +     
Sbjct: 114 GCQLQHITYEGQLSLKTQKVKDVIERIGHQNPDFVKPALGPKEPWAYRNKMQMPVGGARG 173

Query: 57  DLYHIMFDQQTKERMRIDYFMP---GSLLINALMIEMMATIRLEPL----LRAKLFQIDY 109
           D+    +   + + ++         G+  I  +  ++   + +EP      +  L  +  
Sbjct: 174 DIQMGFYAMGSHDIVQGTNCPIQDDGNNTIAQVCYDIAKELDVEPYDEHTGKGVLRHVIG 233

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165
              QS   +V L+          E    + + +   +  +  +    +T + L       
Sbjct: 234 RIGQSG-WMVILVTATDYLPQHEEWVKNITNRIPQVETIVHNVN-GKRTNVILGAKNNIL 291

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223
           Y D  +T   + L +    +SF Q N      + +  LA    ++GD  +++ YCG G  
Sbjct: 292 YGDGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALA-YADLKGDEIVIDAYCGTGTI 350

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA     V+ +EI +P++  AR N   N  +N + +   +               + 
Sbjct: 351 SLFLAHKAKHVIGIEIVEPAIINARENARRNGYDNTEFIVADAA------------VEMP 398

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THT 340
            +     R   I  DP R+G  +  +    +     I+Y+SCNP ++ RD+ IL+   + 
Sbjct: 399 KLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPNRIVYVSCNPATMARDIEILTHYGYE 458

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++ +   D FP T H+E   LL +     H
Sbjct: 459 LKEVQPVDMFPMTAHVETVALLSKLDVDKH 488


>gi|228919254|ref|ZP_04082624.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228840361|gb|EEM85632.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 454

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 146/386 (37%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++R +M           +  +    P  YR +A+  I     
Sbjct: 83  GCQLQHLTYEGQLQAKEKQVRDVMQRIGGLGDVPVHPVLGMKNPWVYRNKAQVPIGEREG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            L    + Q T + + ++  +  +   + L+ E+               R +  LR  + 
Sbjct: 143 GLVAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGITAYNEERNKGTLRHVMA 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +   +T +     +T    L     + +        ++  +     +   +   +KT + 
Sbjct: 203 RYGQVTGEIMLVFITRTAELPNKNAIIEEIAAKFPEVKSIVQNVNTKRTNVIFGDKTTVL 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              +Y+ + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 263 YGSEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKTLEYAKLNGNETVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  VEI   ++E A  N   N++ N +     ++       +E    
Sbjct: 319 GSISLFLAQKAKKVYGVEIVPEAIEDANRNATLNNMTNAEFGVGEAEVVIPKWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
                        T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L   
Sbjct: 375 --------GVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDLKVLEEG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP+T H+EC   L 
Sbjct: 427 GYKTQEVQPVDMFPHTTHVECVAWLK 452


>gi|260887170|ref|ZP_05898433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
           ATCC 35185]
 gi|260863232|gb|EEX77732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
           ATCC 35185]
          Length = 466

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 149/390 (38%), Gaps = 47/390 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K  ++   +     +  +++       EP  YR + +F +     
Sbjct: 93  GCQLQHLSYGGQLHWKRQQVVDAVERIGGLSGIEVLPVLGAKEPWLYRNKMQFPVGKKRG 152

Query: 57  DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105
                 F + + + +                     ++  L I +    R   +LR  + 
Sbjct: 153 KTVIGCFAKGSHDIIDTRDCRIQKDGNNTIVNVMREIVERLHIPVYDEDRHTGVLRHIVG 212

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKT 158
           +I     ++ +A+V L+         +E    LR+ +   K   Q I           +T
Sbjct: 213 RI----GENGEAMVVLVTATKDLPKAKEITRLLRERVPNLKSVQQNIQTYRNNVILGRET 268

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
           K+   +  + +R+      L +     SF Q N      + E  L  A    +  +++ Y
Sbjct: 269 KLLWGKPTIPDRIGR----LRFSISARSFFQVNTEQAAVLYEKALEYADLSGKETVIDAY 324

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L LA+   RV  +EI KP++E A+ N   NH+ N   +   + E    +  E 
Sbjct: 325 CGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLVGDATELMPRLCHEN 384

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL 335
                        R   I VDPPR+G  +  +          I+Y+SCNP +L RDL+IL
Sbjct: 385 ------------IRPHVIVVDPPRAGCTETVLKTFAGMRPDRIVYVSCNPATLARDLAIL 432

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +   ++   +   D FP T H+E    L+R
Sbjct: 433 AKLGYSAREIQPVDMFPQTSHVEAVTKLIR 462


>gi|257087679|ref|ZP_05582040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6]
 gi|256995709|gb|EEU83011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis D6]
 gi|315025522|gb|EFT37454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2137]
          Length = 456

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 149/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I   L      +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSLKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|168212723|ref|ZP_02638348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens CPE str. F4969]
 gi|170715672|gb|EDT27854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens CPE str. F4969]
          Length = 455

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 150/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K DR++  +      +  I         P  YR + +  I     
Sbjct: 81  GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102
           ++    F  ++ + + ++  +    +   +  L  E +    + P           ++R 
Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNIDGEYDEKGIVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +  + T++    +VT   +    + + +  ++    +   K  IQ I  + KT + L
Sbjct: 201 IMIRRGFTTNEVMVVLVTNGENLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
             +    + ++ ++       +     SF Q N      +    L  A      ++ + Y
Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPIQTEVLYGKALEYANLTGNEEVFDAY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+          
Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
               + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L RDL +L
Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365
               +    +   D FP T H+E   LL++K
Sbjct: 425 EENGYKTLEVQPVDMFPNTAHIENVALLIKK 455


>gi|187934647|ref|YP_001887516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B str. Eklund 17B]
 gi|187722800|gb|ACD24021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B str. Eklund 17B]
          Length = 455

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 156/393 (39%), Gaps = 46/393 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEPIHYRMRAEFHIWHDG 55
             ++    Y++QL  K +R++  +      + +I        S P  YR + +  I    
Sbjct: 80  GCSIQHMTYKKQLDFKWERVKDCIEKIGGLSKEIINYPMGMESNPYRYRNKVQLPIGKVN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-------------INALMIEMMA-TIRLEPLLR 101
           +++    +  ++ + + +DY +    +             IN +    +        +L+
Sbjct: 140 NEIVIGFYAPRSHDIIDLDYCLIQDKVADDVANLTKQWIKINNIEPATIDGEFNSNGILK 199

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             + +  +   ++D+ +V L+          E    + + +   K  +  I   N T + 
Sbjct: 200 HLMIRRGF---KTDEVMVVLVATTSNIPKLDEFKHIILENIKGIKSIVLNINPKN-TNVI 255

Query: 162 LDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           L  +    Y ++ +        +     SF Q N      +    L    G+ G+  + +
Sbjct: 256 LGEECITLYGEDTIKDYIGEFKFNISPLSFFQVNPIQTEILYNKALE-YAGLTGNETVFD 314

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  +L L++   +V  VEI +P++  A+ N   N+V+N +     S+E    +  
Sbjct: 315 AYCGTGTITLFLSQKAKKVYGVEIIEPAIINAKENAKLNNVDNAEFFVGKSEEVIPNLIS 374

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
           E              +   I VDPPR G D   +  +       ++Y+SC+P +L RDL 
Sbjct: 375 E------------GLKADIIVVDPPRKGCDIKLLEAIGDVKPERVVYVSCDPSTLSRDLK 422

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           IL    + +  +   D FP T H+E  V L++K
Sbjct: 423 ILDEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455


>gi|18309349|ref|NP_561283.1| RNA methyltransferase [Clostridium perfringens str. 13]
 gi|50401631|sp|Q8XNG6|Y367_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE0367
 gi|18144025|dbj|BAB80073.1| RNA methyltransferase [Clostridium perfringens str. 13]
          Length = 455

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 149/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K DR++  +      +  I         P  YR + +  I     
Sbjct: 81  GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102
           ++    F  ++ + + ++  +    +   +  L  E +    + P           ++R 
Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +  + T++    +VT        + + +  ++    +   K  IQ I  + KT + L
Sbjct: 201 IMIRRGFTTNEVMVVLVTNGEKLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
             +    + ++ ++       +     SF Q N      +    L  A      ++ + Y
Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPIQTEVLYGKALEYANLTGNEEVFDAY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+          
Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
               + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L RDL +L
Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365
               +    +   D FP T H+E   LL++K
Sbjct: 425 EENGYKTLEVQPVDMFPNTAHIENVALLIKK 455


>gi|297545033|ref|YP_003677335.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842808|gb|ADH61324.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 453

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 148/387 (38%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
             +     YE QL  K  +++  +      +   +  I   EP  YR +A+F +     +
Sbjct: 82  GCSFQHLSYEGQLKYKTQKVKDNLERIGKVYTKVHEIIGMKEPQRYRNKAQFPVGMLDGE 141

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
           +    +  ++ + + I+  M  + +           I    + +      + L+R  + +
Sbjct: 142 VVTGFYAPRSHDIVPIESCMIQNEISDNIARTVRNWIKKYNVSVYDEKAGKGLIRHIVTR 201

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
           + + T +    +V    H    +   +    L+  +   K  +  I     T + + +D 
Sbjct: 202 VAFKTGEVMVILVVNGKHIPYKE---QLIDALKKEIKGLKSVVLNINTKR-TNVIMGKDN 257

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
              Y  + +    + + +     SF Q N      +   VL  A       ++++YCG G
Sbjct: 258 ITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKVLEYADLKGNETVIDVYCGIG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL  A+    V  +E    +VE A+ N   N + NV+ +   +++             
Sbjct: 318 TISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKV------------ 365

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
           + ++     +   + +DPPR G D   +  +       I+Y+SCNP +L RDL  L    
Sbjct: 366 MPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRYLDDKG 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +    +   D FPYT H+E   L+  K
Sbjct: 426 YKTMEVQPVDMFPYTHHVESVCLITNK 452


>gi|229544908|ref|ZP_04433633.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322]
 gi|229309800|gb|EEN75787.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX1322]
 gi|295113655|emb|CBL32292.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76]
          Length = 456

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALNLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|254932803|ref|ZP_05266162.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|293584356|gb|EFF96388.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|332312191|gb|EGJ25286.1| hypothetical protein LMOSA_26720 [Listeria monocytogenes str. Scott
           A]
          Length = 453

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QL  K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|228899170|ref|ZP_04063440.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           4222]
 gi|228860439|gb|EEN04829.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
           4222]
          Length = 459

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 157/384 (40%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFVAEVQKQIPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    + + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAAALTGDEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V L  K
Sbjct: 436 EYVQPVDMFPHTAHVENVVRLKLK 459


>gi|259047667|ref|ZP_05738068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella
           adiacens ATCC 49175]
 gi|259035858|gb|EEW37113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella
           adiacens ATCC 49175]
          Length = 467

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 154/389 (39%), Gaps = 42/389 (10%)

Query: 3   GTLL--IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDG 55
           GT+      YE QLA K  +++ +M    ++P L++         + YR +A+  +    
Sbjct: 94  GTMPLQHMTYESQLAFKQQQVKNVMTKIAKMPELEVRRALGMESALGYRNKAQIPVRTVD 153

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104
             L    F + + + + ++ F      I+ L++ +   +R  P+           L+  +
Sbjct: 154 GLLTTGFFKKNSHDLIPMENFHIQDPEIDRLIVAVRDILRKYPVVAYDEANHTGDLKHII 213

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +    T Q     VT        +A           + +    IQ     +    +TK+
Sbjct: 214 VRRGLRTKQVMIIFVTRTKGLPQAEAIVRDITAAHPEVVSIVQNIQPKPTNVIMGRETKV 273

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
               D  +E+L        ++    SF Q N      + +  + A     G+ +++ YCG
Sbjct: 274 LFGEDVYEEKL----FEFTFKISARSFFQVNTVQTEVLYQQAIDAADLKGGETVVDAYCG 329

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL  AR   +V A+EI   ++  A+ N   N V NV     ++++     + E   
Sbjct: 330 IGTMSLAFARDAKKVYAMEIVDDAIVMAKENAKLNGVTNVHFETGAAEKIMPRWKEE--- 386

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   I VDPPR GLD A +    A     I+Y+SCNP +L RDL     
Sbjct: 387 ---------GIQPDVIVVDPPRKGLDLAFIEAACATRPERIVYVSCNPATLARDLVHFKE 437

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365
             +  + +   D FP T H+E   LL RK
Sbjct: 438 RGYEAQYVQPVDMFPMTAHIEVVGLLERK 466


>gi|168209109|ref|ZP_02634734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens B str. ATCC 3626]
 gi|170712831|gb|EDT25013.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens B str. ATCC 3626]
          Length = 455

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 148/391 (37%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K DR++  +      +  I         P  YR + +  I     
Sbjct: 81  GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102
           ++    F  ++ + + ++  +    +   +  L  E +    + P           ++R 
Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +  + T++    +VT        + + +  ++    +   K  IQ I  + KT + L
Sbjct: 201 IMIRRGFTTNEVMVVLVTNGEKLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
             +    + ++ ++       +     SF Q N      +    L  A      ++ + Y
Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+          
Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
               + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L RDL +L
Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
               +    +   D FP T H+E   L+ RK
Sbjct: 425 EDNGYKTLEVQPVDMFPNTSHIETVALICRK 455


>gi|331092292|ref|ZP_08341120.1| hypothetical protein HMPREF9477_01763 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401724|gb|EGG81303.1| hypothetical protein HMPREF9477_01763 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 554

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 150/395 (37%), Gaps = 39/395 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51
            G  + +  YE+QL  K  ++R  +             V         P HYR +A+F  
Sbjct: 78  GGCQIQELSYEKQLEFKEKKVRGNIERIGGFSSEFLDSVMEEICGMDNPFHYRNKAQFPF 137

Query: 52  WHDGDDLYH-IMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99
             D +       +  +T + +       G              +N   I        +  
Sbjct: 138 GTDKNGQIVTGFYAGRTHQIIPNMECALGCEENGKILKIIVDFMNKYHISAYDEKTGKGF 197

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRAN 156
           +R  L +  + T +    +V    +    +   +   ++       ++   +   +    
Sbjct: 198 VRHALLRFGFTTKEIMVCLVVNGDNFPHSEKLVDNLRKIEGMTSITYSVNKENTNVIMGK 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214
              +   + Y+ + +      + Y+    SF Q N     ++ ++ L    G+ G+  + 
Sbjct: 258 SIHLLWGQTYITDYIG----NVKYQISPLSFYQVNPKQTENLYQYALE-YAGLTGEETVW 312

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++E      
Sbjct: 313 DLYCGIGTISLFLAQKAKKVYGVEIVPQAIEDAKRNADINGIENAEFFVGKAEEILP--- 369

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332
            E   N  ++ D        I VDPPR G D+  +  +       I+Y+SC+  +L RDL
Sbjct: 370 -EYYENYAREHDGEKAYADVIVVDPPRKGCDETLLRTMTDMSPERIVYVSCDSATLARDL 428

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
             L    + ++++   D FP T H+E  V LVRK 
Sbjct: 429 KYLCENGYELQKVRAVDMFPNTVHVETVVKLVRKK 463


>gi|310640376|ref|YP_003945134.1| RNA methyltransferase, trma family [Paenibacillus polymyxa SC2]
 gi|309245326|gb|ADO54893.1| RNA methyltransferase, TrmA family [Paenibacillus polymyxa SC2]
          Length = 585

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 149/417 (35%), Gaps = 68/417 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29
              L    YE QL  K   +  ++                                    
Sbjct: 185 GCQLQHMSYEAQLGWKRQHVVDVLERIGKLSVTTESSERTAEVLADSADGNADHMSRVQG 244

Query: 30  -VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA--- 85
            V +  +  SEP  YR +A+  I      L    + + +   + ++  +      +    
Sbjct: 245 VVVHPTLGMSEPWRYRNKAQVPIGVAEGGLVGGFYARGSHRIVDMNTCLIQDERNDEVVA 304

Query: 86  --------LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW----RE 133
                   L I          LLR  + +  + T +    +VT        DAW    RE
Sbjct: 305 RVKEIGRMLGISAYNEETGRGLLRHVVVKTAFRTGEMMLVLVTNGRDIPHADAWIGSIRE 364

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               +         +   +   ++T++   RD + + +      + +     SF Q N  
Sbjct: 365 HIPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIG----NVQFAISARSFYQVNPV 420

Query: 194 INVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
               +    V  A    +  +++ YCG G  SL LA+H D+V  VEI K +++ AR N  
Sbjct: 421 QTEVLYSKTVEYAGLTGKETVIDAYCGIGTISLFLAQHADQVYGVEIVKEAIDDARSNAL 480

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N + NVK    +S++   A +                    I VDPPR G D   +  +
Sbjct: 481 LNEMRNVKFEVGASEDVIPAWKE------------QGITADVIVVDPPRKGCDPRLLDTI 528

Query: 313 QAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
                  ++Y+SCNP +L RDL IL    ++   +   D FP+T H+E   LLVRK 
Sbjct: 529 LEMKPERVVYVSCNPSTLARDLRILEDGGYSTVEVQPVDMFPHTVHVESVALLVRKD 585


>gi|256763335|ref|ZP_05503915.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3]
 gi|256963815|ref|ZP_05567986.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           HIP11704]
 gi|307271762|ref|ZP_07553033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
 gi|256684586|gb|EEU24281.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T3]
 gi|256954311|gb|EEU70943.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           HIP11704]
 gi|306511640|gb|EFM80639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
          Length = 456

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNKFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|29377186|ref|NP_816340.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|227554196|ref|ZP_03984243.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22]
 gi|257090896|ref|ZP_05585257.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis
           CH188]
 gi|257420102|ref|ZP_05597096.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
 gi|312902534|ref|ZP_07761740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|50401756|sp|Q830R6|Y2706_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_2706
 gi|29344652|gb|AAO82410.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
 gi|227176695|gb|EEI57667.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis HH22]
 gi|256999708|gb|EEU86228.1| tRNA (uracil-5-)-methyltransferase trmA [Enterococcus faecalis
           CH188]
 gi|257161930|gb|EEU91890.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis T11]
 gi|310634204|gb|EFQ17487.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|315573827|gb|EFU86018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309B]
 gi|315580263|gb|EFU92454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309A]
          Length = 456

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMDNPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|313608260|gb|EFR84264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           FSL F2-208]
          Length = 453

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QLA K +++ + M       + +        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLAFKRNQVEETMKRIGKLKVDVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEKTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +   +     + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMLVLVTTKERMPFKNEIVQDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|331086752|ref|ZP_08335829.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330409918|gb|EGG89353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 466

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 160/393 (40%), Gaps = 39/393 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQI---------FRSEPIHYRMRAEFHI 51
            G  + +  Y++QL  K  ++   +        ++            EP HYR +A+F I
Sbjct: 78  GGCQIQEMDYQEQLQFKQKKVIGNLERIGGFAPEVLEKITQPVCGMDEPFHYRNKAQFPI 137

Query: 52  WHDGD-DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PL 99
             D D       +  +T + +       G      ++ E+++ +               L
Sbjct: 138 GTDKDGKAVAGFYAGRTHQIIPNTDCALGVSQNQQILEEILSVMNENHIPAYNEQDCSGL 197

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRAN 156
           +R  L +  + T +     V    +    D + +   ++   R    ++  +   +    
Sbjct: 198 VRHILIRYGFTTKEIMVCFVINGDNLPCADKFVDKLSQIEGMRSITFSKNKENTNVIMGK 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214
           + ++     Y+ + +      + Y+    SF Q N      + ++ L    G+ G+  + 
Sbjct: 258 EIEVLWGDGYITDYIG----NVKYQISPLSFYQVNPVQTEKLYKYALE-YAGLTGEETVW 312

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++E   A  
Sbjct: 313 DLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKQNAELNDMKNAEFFVGKAEEILPAYY 372

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332
                N  K+          I VDPPR G ++A +  MV+  P  I+Y+SC+  +L RDL
Sbjct: 373 E----NYAKEHPGQQAHADVIVVDPPRKGCEEALLETMVKMQPDRIVYVSCDSATLARDL 428

Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
             L    + +E++ + DQFP T H EC  LL R
Sbjct: 429 KYLCGEGYALEKVQVVDQFPNTVHTECVTLLQR 461


>gi|167037107|ref|YP_001664685.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115522|ref|YP_004185681.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855941|gb|ABY94349.1| RNA methyltransferase, TrmA family [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928613|gb|ADV79298.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 460

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 148/387 (38%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWH-DGD 56
             +L    YE QL  K  +++  +          +  I   +P  YR +A+F +   +G 
Sbjct: 82  GCSLQHLSYEGQLKYKTQKVKDNLERIGKVYTRVHDTIGMEKPQRYRNKAQFPVGMVEGK 141

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLF 105
                 +  ++ + + ++  M    +           I    I +      + L+R    
Sbjct: 142 AAVTGFYAPRSHDIVPVESCMIQHEISDEIARIVRNWIRKYNISVYDEKTGKGLIRHIAT 201

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           ++ + T +    IV     + Y + L DA +E    L+  +     +   +    +    
Sbjct: 202 RVAFKTGEVMAVIVINGKDIPYKKQLIDALKEEIRGLKSVVININTKKTNVIMGEENITI 261

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              D + + +    + + +     SF Q N      +    L  A    +  ++++YCG 
Sbjct: 262 YGSDNIIDYI----KDIKFEISPLSFFQVNPVQTEVLYGKALEYADLKGEETVIDVYCGI 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL  A+    V  +E    +VE A+ N   N + NV+ +   +++            
Sbjct: 318 GTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGDAEKV----------- 366

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-T 337
            + ++     +   + +DPPR G D + +  V       I+Y+SCNP +L RDL  L   
Sbjct: 367 -MPELVDKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRYLEDN 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +    +   D FPYT H+E   L +R
Sbjct: 426 GYKTMEVQPVDMFPYTYHVESVALALR 452


>gi|46907981|ref|YP_014370.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226224354|ref|YP_002758461.1| hypothetical RNA methyltransferase [Listeria monocytogenes
           Clip81459]
 gi|254992256|ref|ZP_05274446.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL
           J2-064]
 gi|51316673|sp|Q71YR7|Y1776_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1776
 gi|46881251|gb|AAT04547.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|225876816|emb|CAS05525.1| Putative hypothetical RNA methyltransferase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 453

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QL  K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|255974885|ref|ZP_05425471.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2]
 gi|256616789|ref|ZP_05473635.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC
           4200]
 gi|256854009|ref|ZP_05559374.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256961043|ref|ZP_05565214.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           Merz96]
 gi|257081727|ref|ZP_05576088.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol]
 gi|293384567|ref|ZP_06630433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|293386796|ref|ZP_06631367.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|307278742|ref|ZP_07559809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|307290285|ref|ZP_07570201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|312906393|ref|ZP_07765401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|312979448|ref|ZP_07791136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
 gi|255967757|gb|EET98379.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T2]
 gi|256596316|gb|EEU15492.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis ATCC
           4200]
 gi|256710952|gb|EEU25995.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256951539|gb|EEU68171.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           Merz96]
 gi|256989757|gb|EEU77059.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis E1Sol]
 gi|291078113|gb|EFE15477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|291083799|gb|EFE20762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|306498706|gb|EFM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|306504603|gb|EFM73806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|310627547|gb|EFQ10830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|311287819|gb|EFQ66375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
 gi|315030469|gb|EFT42401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4000]
 gi|315032560|gb|EFT44492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0017]
 gi|315170491|gb|EFU14508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1342]
          Length = 456

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|163814586|ref|ZP_02205975.1| hypothetical protein COPEUT_00737 [Coprococcus eutactus ATCC 27759]
 gi|158450221|gb|EDP27216.1| hypothetical protein COPEUT_00737 [Coprococcus eutactus ATCC 27759]
          Length = 507

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 149/392 (38%), Gaps = 40/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--------LQIFRSEPIHYRMRAEFHIWH 53
             T+    YEQQL  K ++++  +                     +P HYR +A+F +  
Sbjct: 128 GCTMQQVSYEQQLEYKWNKVKNCLQRIGKMENVEAIMEKPAYGMDDPFHYRNKAQFPVGR 187

Query: 54  DG-DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLR 101
           D   D+    +  ++ + +  +    G+ +           I    I          L+R
Sbjct: 188 DKNGDVVIGFYAGRSHDIIDTESCAIGAPVNDQIVAIVRSFIEDNHISTYDEETGRGLVR 247

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKT 158
             L ++ + T +    +VT        +   +  +++            +       +K 
Sbjct: 248 HILIRVGFTTKEIMVCLVTNGNKLPHSEILIDELVKIDGMTSICLNVNMENTNRILGDKC 307

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
                + Y+ + +      + Y+    SF Q N      +    L  A       + ++Y
Sbjct: 308 ITLWGQSYITDYIG----DIKYQISPLSFYQVNPVQTNVLYNKALEYADLSGDETVWDMY 363

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  SL LA+   +V  VEI   +++ AR+N   N + N +     ++E    + ++ 
Sbjct: 364 CGIGTISLFLAQKAKKVYGVEIVPQAIDDARHNAEINGITNAEFFVGKAEEVVPDIYKK- 422

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                            + VDPPR G D   +  +   A   I+Y+SC+P +L RD+ IL
Sbjct: 423 --------GGDGSHADVVVVDPPRKGCDQVLLDTLVHMAPERIVYVSCDPATLARDVKIL 474

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
               +   ++A+ DQF ++ H+E   LL RK 
Sbjct: 475 QEKGYVANKVAVVDQFCHSGHVESVCLLSRKD 506


>gi|23098223|ref|NP_691689.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
 gi|50401583|sp|Q8ES75|Y768_OCEIH RecName: Full=Uncharacterized RNA methyltransferase OB0768
 gi|22776448|dbj|BAC12724.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
          Length = 459

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 149/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K  ++  +M           +  +   EP HYR + +  +     
Sbjct: 84  GCQLQHMSYDLQLQMKQGQVHNVMKKVAHLDQVPVHPILGMEEPSHYRNKVQIPVGEKNG 143

Query: 57  DLYHIMFDQQTKERMR-IDYFMPGSLLINALMI---EMMATIRLEPL--------LRAKL 104
           ++    + +++   ++  D        IN ++    ++M    ++          LR  +
Sbjct: 144 EVIVGFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMNKYGIQAYDEKSHRGQLRHIM 203

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            ++ + T       VT        D       E   +++  +     Q   +    KTK+
Sbjct: 204 VRVGHYTKDIMIVFVTKTSKFPEKDRIIKELTEQFPQVKSIVQNVNDQRTNVVLGKKTKV 263

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
               +Y+ +++      L +     SF Q N      + +  L      + D+ ++ YCG
Sbjct: 264 LWGENYIYDKIG----DLTFAISPKSFFQVNPVQTKVLYDKALEYANIDKDDVVIDAYCG 319

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G+ SL LA+   +V  +E+   ++E A+ N   N +NNV+     +++     +     
Sbjct: 320 IGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVEFSVGQAEKVMPKWKE---- 375

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS- 336
                          I VDPPR G D   +  + A     I+Y+SCNP +L RDL IL  
Sbjct: 376 --------QGLDPDVIVVDPPRKGCDVDFLEAMIAMKPKRIVYVSCNPSTLARDLRILED 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
                +++   D FP T H+EC   L  K
Sbjct: 428 GGFETKQVQPVDMFPSTNHVECVAELTLK 456


>gi|224499529|ref|ZP_03667878.1| hypothetical protein LmonF1_07452 [Listeria monocytogenes Finland
           1988]
          Length = 453

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 148/383 (38%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QL  K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPL--------LRAKLFQ 106
           L    + +++   + +   +  +    L      E++A    EP         +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDLAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   +  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPSWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|224476953|ref|YP_002634559.1| putative RNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421560|emb|CAL28374.1| putative RNA methyltransferase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 453

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 144/388 (37%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH-DG 55
              L    Y+ QL  K +++  +          + N  I    P  YR +++  +     
Sbjct: 82  GCQLQHLAYDAQLEMKRNQVINLFHRKGKYTDTIINETIGMMNPWSYRNKSQIPVGKNKD 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKL 104
                  + Q++ + + +D  +               L+N   + +      E LLR  +
Sbjct: 142 GKTVMGFYRQRSHDIIDMDECIIQDSIQNQLMVMIKELLNKYKVSIYNEKSKEGLLRHVI 201

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            ++ Y + +     VT         ++ +   E    ++  +         +     +K 
Sbjct: 202 IRVGYTSREVMVVFVTNGKKFKQASVIIEKLVEAVPNIKSVIQNINESHSNVIMGRHSKT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
              +D +++ L     ++ ++  + SF Q N+   V +    L  A       +L+ YCG
Sbjct: 262 LFGKDEIEDDL----DSVEFKISDQSFYQINSEQTVKLYNKALEYAQLNGDETVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   ++E A+ N   N  NN   V   ++E     + +   
Sbjct: 318 IGTIGLYMAEKAKHVYGVEVVPAAIEDAKQNAELNSFNNTTFVCGKAEEVIMQWKAD--- 374

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+ 
Sbjct: 375 ---------GIQPDVVMVDPPRKGCDEQFLKTLLELNPKRIVYISCNPSTQQRDAGILTE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + ++ +   D FP T H+E   L   K
Sbjct: 426 QYQLKEITPVDMFPQTTHIETVALFEHK 453


>gi|16803791|ref|NP_465276.1| hypothetical protein lmo1751 [Listeria monocytogenes EGD-e]
 gi|47095677|ref|ZP_00233284.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
           1/2a F6854]
 gi|224503324|ref|ZP_03671631.1| hypothetical protein LmonFR_12550 [Listeria monocytogenes FSL
           R2-561]
 gi|254900744|ref|ZP_05260668.1| hypothetical protein LmonJ_13049 [Listeria monocytogenes J0161]
 gi|254913771|ref|ZP_05263783.1| RNA methyltransferase [Listeria monocytogenes J2818]
 gi|254938158|ref|ZP_05269855.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|255028262|ref|ZP_05300213.1| hypothetical protein LmonL_01654 [Listeria monocytogenes LO28]
 gi|50401632|sp|Q8Y6D6|Y1751_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1751
 gi|16411205|emb|CAC99829.1| lmo1751 [Listeria monocytogenes EGD-e]
 gi|47015962|gb|EAL06888.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
           1/2a F6854]
 gi|258610771|gb|EEW23379.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|293591787|gb|EFG00122.1| RNA methyltransferase [Listeria monocytogenes J2818]
          Length = 453

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QL  K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   +  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPSWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|312900072|ref|ZP_07759389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
 gi|311292829|gb|EFQ71385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
          Length = 456

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLIQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|229549174|ref|ZP_04437899.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|255971891|ref|ZP_05422477.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1]
 gi|256957937|ref|ZP_05562108.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5]
 gi|257079874|ref|ZP_05574235.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1]
 gi|257421676|ref|ZP_05598666.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|294780400|ref|ZP_06745766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
 gi|300860697|ref|ZP_07106784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TUSoD Ef11]
 gi|307269643|ref|ZP_07550978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|312953733|ref|ZP_07772567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|229305411|gb|EEN71407.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis ATCC
           29200]
 gi|255962909|gb|EET95385.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis T1]
 gi|256948433|gb|EEU65065.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis DS5]
 gi|256987904|gb|EEU75206.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis JH1]
 gi|257163500|gb|EEU93460.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|294452500|gb|EFG20936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
 gi|300849736|gb|EFK77486.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TUSoD Ef11]
 gi|306514033|gb|EFM82620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|310628360|gb|EFQ11643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|315035082|gb|EFT47014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0027]
 gi|315148672|gb|EFT92688.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4244]
 gi|315151812|gb|EFT95828.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0031]
 gi|315155574|gb|EFT99590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0043]
 gi|315159336|gb|EFU03353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0312]
 gi|323481633|gb|ADX81072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           62]
 gi|329570604|gb|EGG52323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1467]
          Length = 456

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNNFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|307276947|ref|ZP_07558057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
 gi|306506370|gb|EFM75530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
          Length = 456

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|325663161|ref|ZP_08151611.1| hypothetical protein HMPREF0490_02352 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470615|gb|EGC73845.1| hypothetical protein HMPREF0490_02352 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 464

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 158/393 (40%), Gaps = 39/393 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQI---------FRSEPIHYRMRAEFHI 51
            G  + +  Y++QL  K  ++   +        ++            EP HYR +A+F +
Sbjct: 78  GGCQIQEMDYQEQLQFKQKKVIGNLERIGGFAPEVLEKITQPVCGMDEPFHYRNKAQFPV 137

Query: 52  WHDGD-DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPL 99
             D D       +  +T + +       G             ++N   I          L
Sbjct: 138 GTDKDGKAVTGFYAGRTHQIIPNTDCALGVSQNQQILEEILSIMNENHIPAYNEQDCSGL 197

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRAN 156
           +R  L +  + T +     V    +    D + +   ++   R    ++  +   +    
Sbjct: 198 VRHILIRYGFTTKEIMVCFVINGDNLPCADKFVDKLSQIEGMRSITFSKNKENTNVIMGK 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214
           + ++     Y+ + +      + Y+    SF Q N      + ++ L    G+ G+  + 
Sbjct: 258 EIEVLWGDGYITDYIG----NVKYQISPLSFYQVNPVQTEKLYKYALE-YAGLTGEETVW 312

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++E   A  
Sbjct: 313 DLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKQNAELNDMKNAEFFVGKAEEILPAYY 372

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332
                N  K+          I VDPPR G ++A +  MV+  P  I+Y+SC+  +L RDL
Sbjct: 373 E----NYAKEHPGQQAHADVIVVDPPRKGCEEALLETMVKMQPDRIVYVSCDSATLARDL 428

Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
             L    + +E++ + DQFP T H+E  VLL R
Sbjct: 429 KYLCGEGYALEKVQVVDQFPNTVHVETCVLLQR 461


>gi|168216552|ref|ZP_02642177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens NCTC 8239]
 gi|182381468|gb|EDT78947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens NCTC 8239]
          Length = 455

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 148/391 (37%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K DR++  +      +  I         P  YR + +  I     
Sbjct: 81  GCKLQHASYKAQLDFKWDRVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102
           ++    F  ++ + + ++  +    +   +  L  E +    + P           ++R 
Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +  + T++    +VT        + + +  ++    +   K  IQ I  + KT + L
Sbjct: 201 IMIRRGFTTNEVMVVLVTNGEKLPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
             +    + ++ ++       +     SF Q N      +    L  A      ++ + Y
Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPTQTEVLYGKALEYANLTGNEEVFDAY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+          
Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
               + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L RDL +L
Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDSITNIDAKKIVYVSCDPSTLGRDLQVL 424

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365
               +    +   D FP T H+E    L++K
Sbjct: 425 EENGYKTLEVQPVDMFPNTSHVENVAKLIKK 455


>gi|257898308|ref|ZP_05677961.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com15]
 gi|257836220|gb|EEV61294.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com15]
          Length = 457

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 155/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +YEQQL  K  ++  +M              +  +EP  YR +A+  +      L 
Sbjct: 88  LAHLKYEQQLVFKQKQVEHVMAKIAKMPEVPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              + + + + + I+ F     +I+  +  +   ++            E  LR  + +  
Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT        + + +A  E    +   +     +   +   +K K+   R
Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY++++L        YR    SF Q N     ++ +  +   +  + D +++ Y G G  
Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTI 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA   D+V  +E+   ++E A++N   N + NV      +++  +  +         
Sbjct: 324 GLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVMKKWQE-------- 375

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD  + +   + 
Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLFAEAGYA 431

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E     V+
Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455


>gi|294618092|ref|ZP_06697689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1679]
 gi|291595664|gb|EFF26960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1679]
          Length = 457

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 155/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +YEQQL  K  ++  +M              +  +EP  YR +A+  +      L 
Sbjct: 88  LAHLKYEQQLVFKQKQVEHVMAKIAKMPEVPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              + + + + + I+ F     +I+  +  +   ++            E  LR  + +  
Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT        + + +A  E    +   +     +   +   +K K+   R
Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY++++L        YR    SF Q N     ++ +  +   +  + D +++ Y G G  
Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTI 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA   D+V  +E+   ++E A++N   N + NV      +++  +  +         
Sbjct: 324 GLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYEVGKAEKVMKKWQE-------- 375

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHT 340
                  +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD  +L    + 
Sbjct: 376 ----KGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLLTEAGYV 431

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E     V+
Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455


>gi|218895544|ref|YP_002443955.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
 gi|218542488|gb|ACK94882.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
          Length = 459

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 157/384 (40%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFVAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    + + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAAALTGDEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           + +   D FP+T H+E  V L  K
Sbjct: 436 DYVQPVDMFPHTAHVENVVRLKLK 459


>gi|312112309|ref|YP_003990625.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1]
 gi|311217410|gb|ADP76014.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1]
          Length = 459

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 149/393 (37%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    YE QL EK D + Q +       ++       I   +P HYR +++F +   
Sbjct: 86  GCQLQHLDYEAQLREKRDIVIQALERHCRLPVETLEIRPTIGMEDPWHYRNKSQFQVGMK 145

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAK 103
             ++   ++   + + + I   +      N            L I +        L+R  
Sbjct: 146 KGEVIAGLYGLNSHQLIDISECLIQHPATNRVTNMVKMILQDLRIPIYNERTQTGLVRTI 205

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++ + T      ++T        +        ++  L   K  +Q I    KT +   
Sbjct: 206 VARVGFRTGDVQLVLITAKKEIPRKEL---LIAEIKRRLPEVKSIVQNIN-GQKTSLIFG 261

Query: 164 RD--------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214
            +        Y+ E L      L +     +F Q N    V + + V  AA       ++
Sbjct: 262 EESLLLEGEEYIQEVLG----DLSFELSARAFFQLNPVQTVKLYDEVKKAAALTGTEKVV 317

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G   L LA+    +  +++   ++E A+ N   +   N   V   ++       
Sbjct: 318 DAYCGVGTIGLWLAKDAGEIRGMDVIPEAIEDAKKNAKKHGFANATYVSGKAEALLPKWV 377

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
           +E             ++   I VDPPR+G D+  +  +       I+Y+SCNP SL RD+
Sbjct: 378 KE------------GWKPDVIVVDPPRTGCDEQLLKTILKVKPQRIVYVSCNPSSLARDI 425

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +LS  + ++ +   D FP+T H+EC   L  K
Sbjct: 426 DVLSKFYKVDYIQPVDMFPHTAHVECVAKLTLK 458


>gi|169825840|ref|YP_001695998.1| putative RNA methyltransferase [Lysinibacillus sphaericus C3-41]
 gi|168990328|gb|ACA37868.1| Hypothetical RNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
          Length = 459

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 144/386 (37%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQI-FRSEPIHYRMRAEFHIW-HDGD 56
              L    YE QL  K + +R +M        P L +    EP HYR +A+     ++  
Sbjct: 88  GCQLQHLSYEGQLKWKENMVRNVMQRIGKIDAPVLPVKGMKEPWHYRNKAQIPFSENEAG 147

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
                 +  +T   + ++  +  +   +A+++ +              +  E +LR  + 
Sbjct: 148 QAIAGFYKTKTHSIVDMERCLIQTGEADAILVGLKKELVAIGMRPYNELSHEGMLRHVVI 207

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL----RDALHARKYQIQLIGRANKTKIC 161
           +    T +    +VT        +A      +L       +    ++   +   + T   
Sbjct: 208 RKARATGEVMVVLVTKKKKFPQKEAAIAVIQKLVPNVTSIMQNVNHEKTNVIFGDDTLNL 267

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             +D + + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 268 WGKDVIIDTIG----DVRFEISARSFYQVNPEQTEVLYKQALDYANLQGDERVIDAYCGI 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+    V+ VEI   ++E A+ N   N   N       ++E      +E    
Sbjct: 324 GTISLFLAQKARAVMGVEIVPQAIEDAKRNAVLNGFTNTYFEAGPAEEVIPRWYKE---- 379

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-T 337
                         + VDPPR G D+A +  +  Q    ++Y+SCNP +L RDL IL   
Sbjct: 380 --------GKEADVLVVDPPRKGCDEALLTTILEQRPKRVVYVSCNPATLARDLRILENG 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP++ H E    L 
Sbjct: 432 GYQTQEIQPVDMFPHSTHCEAVAWLE 457


>gi|229125919|ref|ZP_04254944.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
 gi|228657577|gb|EEL13390.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
          Length = 459

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 158/384 (41%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA      ++++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNENIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V L  K
Sbjct: 436 EYVQPVDMFPHTAHVENVVRLNLK 459


>gi|289550385|ref|YP_003471289.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis
           HKU09-01]
 gi|289179917|gb|ADC87162.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis
           HKU09-01]
          Length = 461

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 149/387 (38%), Gaps = 38/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
              L    YE QLA K +++  +          V N  I    P  YR +++  I  D  
Sbjct: 87  GCQLQHMSYEAQLAMKKEQVVNLFHRKGQFTDTVINDTIGMDNPWRYRNKSQVPIGQDKM 146

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +      + Q++ + + +D  +                IN   I +      + +LR  +
Sbjct: 147 NHKIMGYYRQRSHDIIDMDSCLIQDKQHQDIMNHVKKWINEYHISIYNERTKKGVLRHLV 206

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  + T   D+ +V  + +            +L+ A        Q I  ++   I   +
Sbjct: 207 IRTGHYT---DEIMVIFVTNGSKFKHANMLVEQLKQAFPNITSIKQNINNSHSNVIMGQQ 263

Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
               Y  +++      + ++  + SF Q N+     + +  +  A    Q  +L+ YCG 
Sbjct: 264 SATLYGKDKIVDQLSDITFKISDQSFYQINSSQTEKLYQKAIDYAQLDGQEIVLDTYCGI 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L +A     V  VE+   +++ AR N   N ++N   V   +++     +RE    
Sbjct: 324 GTIGLYMAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMDWQRE---- 379

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                     +   + VDPPR G +   +  +       I+YISCNP +  RD  +L+T 
Sbjct: 380 --------GIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQRDAHMLATQ 431

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP T H+E   L  +K
Sbjct: 432 YDLKEITPVDMFPQTTHIETVALFKKK 458


>gi|69246826|ref|ZP_00604135.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
 gi|257878457|ref|ZP_05658110.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,230,933]
 gi|257882876|ref|ZP_05662529.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,502]
 gi|257889346|ref|ZP_05668999.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,410]
 gi|257894358|ref|ZP_05674011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,408]
 gi|258616021|ref|ZP_05713791.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|260560044|ref|ZP_05832222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
 gi|261207467|ref|ZP_05922153.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
 gi|289565878|ref|ZP_06446319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           D344SRF]
 gi|293559994|ref|ZP_06676502.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1162]
 gi|294621045|ref|ZP_06700237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           U0317]
 gi|314937822|ref|ZP_07845139.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a04]
 gi|314941632|ref|ZP_07848512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133C]
 gi|314948879|ref|ZP_07852248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0082]
 gi|314951003|ref|ZP_07854070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133A]
 gi|314993004|ref|ZP_07858400.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133B]
 gi|314996451|ref|ZP_07861494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a01]
 gi|68195059|gb|EAN09521.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
 gi|257812685|gb|EEV41443.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,230,933]
 gi|257818534|gb|EEV45862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,502]
 gi|257825706|gb|EEV52332.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,410]
 gi|257830737|gb|EEV57344.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,408]
 gi|260073879|gb|EEW62203.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
 gi|260078358|gb|EEW66063.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
 gi|289162338|gb|EFD10197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           D344SRF]
 gi|291599359|gb|EFF30384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           U0317]
 gi|291606082|gb|EFF35508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1162]
 gi|313589433|gb|EFR68278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a01]
 gi|313592527|gb|EFR71372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133B]
 gi|313596858|gb|EFR75703.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133A]
 gi|313599523|gb|EFR78366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133C]
 gi|313642853|gb|EFS07433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a04]
 gi|313644669|gb|EFS09249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0082]
          Length = 457

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 155/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +YEQQL  K  ++  +M              +  +EP  YR +A+  +      L 
Sbjct: 88  LAHLKYEQQLVFKQKQVEHVMAKIAKMPEVPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              + + + + + I+ F     +I+  +  +   ++            E  LR  + +  
Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT        + + +A  E    +   +     +   +   +K K+   R
Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY++++L        YR    SF Q N     ++ +  +   +  + D +++ Y G G  
Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTI 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA   D+V  +E+   ++E A++N   N + NV      +++  +  +         
Sbjct: 324 GLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVMKKWQE-------- 375

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD  + +   + 
Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLFAEAGYA 431

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E     V+
Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455


>gi|47092904|ref|ZP_00230686.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
           H7858]
 gi|255521018|ref|ZP_05388255.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL
           J1-175]
 gi|47018730|gb|EAL09481.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
           H7858]
          Length = 453

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 145/383 (37%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    YE QLA K +++ + M      N+ +        P  YR +++  +      
Sbjct: 84  GCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|254829496|ref|ZP_05234183.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258601911|gb|EEW15236.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
          Length = 453

 Score =  289 bits (739), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 69/383 (18%), Positives = 145/383 (37%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QL  K +++ + M      N+++        P  YR +++  +      
Sbjct: 84  GCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILVKYGTEPYDEQTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   +  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPSWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ +L+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKLLTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|323693228|ref|ZP_08107446.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323502711|gb|EGB18555.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 576

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 145/389 (37%), Gaps = 42/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60
              LL   Y+QQLAEK  R+ +++         I   EP+HYR +      HD   +   
Sbjct: 207 GCQLLHLPYKQQLAEKQKRMEELLKGICPVKPIIGMKEPLHYRNKVHAVFGHDRKGNPLS 266

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109
            ++ + T   + ++  +      + ++  +   ++   +           LR  L +  +
Sbjct: 267 GVYKEGTHILVPVEKCLIEDEKADEIIGTIRGMLKSFKIRTFDEDTGYGFLRHVLVRRGF 326

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
            T +    +VT      +  +       LR+        IQ I          +K  +  
Sbjct: 327 ATGEIMVVLVTA---SPVFPSKNNFVKALREKHPEITTIIQNINNRSTSMVLGDKEHVLY 383

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            R Y+++ L      L +R    SF Q N+     +    L  A    +   L+ YCG G
Sbjct: 384 GRGYIEDVLC----GLRFRISSKSFYQVNSAQTELLYNKALQLAGLTGKEKALDAYCGIG 439

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L+ +R    V+ VE+   +V  A  N   N V N++     +  F   M        
Sbjct: 440 TIGLIASRKAGEVIGVELNPDAVRDAVQNAKMNDVKNIQFYCNDAGRFIVNMAE------ 493

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTT 338
                    +   I +DPPRSG     +  V       ++Y+SC P++L RDL   +   
Sbjct: 494 ------KGEKVDVILMDPPRSGSTKEFIDAVAKMGPERVVYVSCGPETLVRDLRWFMGNG 547

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +        D F  T H+E  VL+ RK +
Sbjct: 548 YRAVEAWPVDMFGGTGHVETVVLIQRKDT 576


>gi|254826004|ref|ZP_05231005.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|293595243|gb|EFG03004.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
          Length = 453

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 144/383 (37%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    YE QLA K +++ + M      N+ +        P  YR +++  +      
Sbjct: 84  GCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E          +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGRGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|315660149|ref|ZP_07913006.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis
           M23590]
 gi|315494830|gb|EFU83168.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis
           M23590]
          Length = 456

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 149/387 (38%), Gaps = 38/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
              L    YE QLA K +++  +          V N  I    P  YR +++  I  D  
Sbjct: 82  GCQLQHMSYEAQLAMKKEQVVNLFHRKGQFTDTVINDTIGMDNPWRYRNKSQVPIGQDKM 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +      + Q++ + + +D  +                IN   I +      + +LR  +
Sbjct: 142 NHKIMGYYRQRSHDIIDMDSCLIQDKQHQDIMNHVKKWINEYHISIYNERTKKGVLRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  + T   D+ +V  + +            +L+ A        Q I  ++   I   +
Sbjct: 202 IRTGHYT---DEIMVIFVTNGSKFKHANMLVEQLKQAFPNITSIKQNINNSHSNVIMGQQ 258

Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
               Y  +++      + ++  + SF Q N+     + +  +  A    Q  +L+ YCG 
Sbjct: 259 SATLYGKDKIVDQLSDITFKISDQSFYQINSSQTEKLYQKAIDYAQLDGQEIVLDTYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L +A     V  VE+   +++ AR N   N ++N   V   +++     +RE    
Sbjct: 319 GTIGLYIAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCGKAEDVIMDWQRE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                     +   + VDPPR G +   +  +       I+YISCNP +  RD  +L+T 
Sbjct: 375 --------GIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQRDAHMLATQ 426

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP T H+E   L  +K
Sbjct: 427 YDLKEITPVDMFPQTTHIETVALFKKK 453


>gi|304436318|ref|ZP_07396296.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370723|gb|EFM24370.1| 23S rRNA (uracil-5-)-methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 469

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 141/383 (36%), Gaps = 33/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFRS----EPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K  ++   +     +P++ +  +     P +YR + +F +     
Sbjct: 94  GCQLQHLSYAAQLRAKRQQVIDALSHIGKLPHVSVRETLAAQSPWNYRNKMQFPVGLAKG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMI-------EMMATIRLEPLLRAKLFQIDY 109
            +    F Q +   +  +         NAL         ++   +  E   +  L  I  
Sbjct: 154 KIVVGCFAQGSHTIIDTENCHIQREPNNALANAVRAIAAQLRIPVYNEDTHKGILRHIVG 213

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165
              Q+   +  ++         +E    LR+ L       Q I       + + RD    
Sbjct: 214 RVGQNGDLMAVIVTASKQLPRAKEFVRLLREHLPNLVSVHQNIQTYR-NNVIMGRDTVLL 272

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           +    +      L +     SF Q N      + E  L+ A       +++ YCG G  +
Sbjct: 273 WGKPTILDGLGRLHFHISPRSFFQVNTQQAERLYEQALSYADLHGTETVIDAYCGTGTIT 332

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA+   +V  +EI +P++  AR N   NHV N + +   + +   A+ +         
Sbjct: 333 LFLAQRARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATKVMPALYK--------- 383

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTI 341
                 R   + VDPPR+G     +          I+Y+SCNP +L RDL+IL    +  
Sbjct: 384 ---QGIRPDVVVVDPPRAGCTPTVLQTFADMKPQRIVYVSCNPATLARDLAILKEFGYHA 440

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   D FP T H+E    L R
Sbjct: 441 QEVQPVDLFPQTSHVETITKLSR 463


>gi|168204451|ref|ZP_02630456.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
           JGS1987]
 gi|170664028|gb|EDT16711.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
           JGS1987]
          Length = 455

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 149/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K +R++  +      +  I         P  YR + +  I     
Sbjct: 81  GCKLQHASYKAQLDFKWERVKDCVSKIGKLDPSIVKYPLGMENPWRYRNKVQLPIGLING 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLRA 102
           ++    F  ++ + + ++  +    +   +  L  E +    + P           ++R 
Sbjct: 141 EVKIGFFAPRSHDIIDMESCLIQDEIGDKVVKLTREWIEKFNIRPYNVDGEYDEKGIVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +  + T++    +VT   +    + + +  ++    +   K  IQ I  + KT + L
Sbjct: 201 IMIRRGFTTNEVMVVLVTNGENIPHKEEFVDLMVK---NIPGIKSVIQNIN-SKKTNVIL 256

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
             +    + ++ ++       +     SF Q N      +    L  A      ++ + Y
Sbjct: 257 GLESKTLWGEDTISDYIGDFRFNISPLSFFQVNPIQTEVLYGKALEYANLTGNEEVFDAY 316

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L L++   +V  VEI   +++ A  N   N V NV+     S+          
Sbjct: 317 CGTGTITLFLSQKAKKVYGVEIIPQAIDNAWINAKENKVENVEFFVGESEVV-------- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
               + D+     +   + VDPPR G D   +  +       I+Y+SC+P +L RDL +L
Sbjct: 369 ----IPDLINKGVKADVVVVDPPRKGCDKKLLDAITNIDAKKIVYVSCDPSTLGRDLKVL 424

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365
               +    +   D FP T H+E    L++K
Sbjct: 425 EENGYKTLEVQPVDMFPNTSHVENVAKLIKK 455


>gi|307288671|ref|ZP_07568652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|306500425|gb|EFM69761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|315165278|gb|EFU09295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1302]
          Length = 456

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSKKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLNLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|311033023|ref|ZP_07711113.1| YefA [Bacillus sp. m3-13]
          Length = 455

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 74/389 (19%), Positives = 149/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRS-EPIHYRMRAEFHIWHDG 55
              L    YE QL  K  +++ ++           +  +     P  YR +A+  I    
Sbjct: 83  GCQLQHLSYEGQLVAKQKQVKDVLERIGHLKDVPVHPVLGMDHNPWRYRNKAQVPIGERE 142

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104
             L    + Q++ E + +   +    + + ++  +                 + +LR  +
Sbjct: 143 GGLIAGFYQQRSHEIIDMKECLIQQEINDRVVQTVREICDKHDVRAYNEKTHKGVLRHVM 202

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +   +T +    ++T    +   R + D   E    ++  +     +   +   ++T++
Sbjct: 203 ARYGLVTGEVMIVLITRTPDIPNRRAIVDEITEALPEVKSVVQNVNTKKTNVIFGDETRV 262

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
               +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YCG
Sbjct: 263 LWGNEYIYDFIG----DIKFAISARSFYQVNPEQTKVLYDKALEYAELTGEESVIDAYCG 318

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++       +E   
Sbjct: 319 IGTISLFLAQKAKKVFGVEIVPEAIEDAKRNAELNEITNAEFAVGEAEVVIPKWYKE--- 375

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336
                          + VDPPR G D++ +  +       ++Y+SCNP +L RDL +L  
Sbjct: 376 ---------GNTADVLVVDPPRKGCDESLLKTILEMKPKKVVYVSCNPATLARDLRVLED 426

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +    +   D FP+T H+EC   LV K
Sbjct: 427 GGYKTVEVQPVDMFPHTVHVECVSHLVLK 455


>gi|229108092|ref|ZP_04237717.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
 gi|228675367|gb|EEL30586.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
          Length = 459

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 157/384 (40%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V L  K
Sbjct: 436 EYVQPVDMFPHTAHVENVVRLNLK 459


>gi|255657345|ref|ZP_05402754.1| putative RNA methyltransferase [Clostridium difficile QCD-23m63]
          Length = 453

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 152/388 (39%), Gaps = 41/388 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55
            G  + D  Y +QL  K + ++Q++              I    P  YR +A+F I  + 
Sbjct: 80  GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  + ++T + +  +  +    +           I A  + +        L+R  +
Sbjct: 140 GVPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +I + T +    +V            +E A  L++ +   K  +  + + + T   L +
Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGK 255

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           +    Y D ++      L++     SF Q N      + +  L  A       + ++YCG
Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYADLNETDTVFDIYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    M RE   
Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNMHNAEFYVGKAEEIVPKMYRE--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336
                          + VDPPR G D+  +  +   +   I+Y+SCNP +L RDL  L+ 
Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMSPERIVYVSCNPSTLARDLDYLNV 423

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
                      D FP++ H+E   L+ R
Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETIALIQR 451


>gi|168185623|ref|ZP_02620258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           C str. Eklund]
 gi|169296454|gb|EDS78587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           C str. Eklund]
          Length = 472

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 156/404 (38%), Gaps = 56/404 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---------------------QIFRSEP 40
             ++    YE QL  K +R++  +       +                      +    P
Sbjct: 85  GCSIQHFNYEAQLEFKKNRVKDCLERIGKLEILTNNEETDKSNCENEGIILHNTLGMKNP 144

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLE 97
             YR + +  +  +  ++    +  ++ + + ++       +   + +L+ E M    ++
Sbjct: 145 YRYRNKVQLPVGEENGEIKVGFYAPRSHDIIDMEICHIQDEVGDTVVSLIKEWMKKYNIK 204

Query: 98  P--------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           P        L+R  + +  + T++    IVT        +   E  ++  D + +    I
Sbjct: 205 PYNEQKNTGLVRHIMVRRGFNTNEVMIVIVTRTNELPYKEELIELILKKIDGITSIVQNI 264

Query: 150 QLIGRANKTKICLD----RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
                + +T + L       Y  + ++       +     SF Q N      +    L  
Sbjct: 265 N----SKRTNVILGLKNINLYGKDYISDYIGEFKFNISPLSFFQVNPVQTEVLYNKALEY 320

Query: 206 TKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                 +++ + YCG G  SL L+++  +V  VEI   ++E A+ N   N+V+N + +  
Sbjct: 321 AALTGNEVVFDAYCGTGTISLFLSKNAKKVYGVEIVDAAIENAKINAEENNVDNAEFIVG 380

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
            S+E    + +               +   + VDPPR G D A +  +       I+Y+S
Sbjct: 381 KSEEVIPNLIK------------QGIKADVVVVDPPRKGCDKALLDAIGNMKPDRIVYVS 428

Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           C+P +L RDL+IL    +  + +   D FP T H+EC V L ++
Sbjct: 429 CDPGTLARDLAILDELGYETKEVQPVDMFPQTGHVECVVRLNKR 472


>gi|254853661|ref|ZP_05243009.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300765947|ref|ZP_07075919.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
 gi|258607040|gb|EEW19648.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|300513333|gb|EFK40408.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL
           N1-017]
          Length = 453

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 144/383 (37%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    YE QLA K +++ + M      N+ +        P  YR +++  +      
Sbjct: 84  GCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E          +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGRGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
             +++   D FP T H+E   +L
Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450


>gi|257884417|ref|ZP_05664070.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,501]
 gi|257820255|gb|EEV47403.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,501]
          Length = 457

 Score =  288 bits (738), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 155/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +YEQQL  K  ++  +M              +  +EP  YR +A+  +      L 
Sbjct: 88  LAHLKYEQQLVFKQKQVEHVMAKIAKMSEIPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              + + + + + I+ F     +I+  +  +   ++            E  LR  + +  
Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEKKNEGQLRHIIIRRG 207

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT        + + +A  E    +   +     +   +   +K K+   R
Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY++++L        YR    SF Q N     ++ +  +   +  + D +++ Y G G  
Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTI 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA   D+V  +E+   ++E A++N   N + NV      +++  +  +         
Sbjct: 324 GLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYEVGKAEKVMKKWQE-------- 375

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD  + +   + 
Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLFAEAGYA 431

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E     V+
Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455


>gi|295108206|emb|CBL22159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus obeum
           A2-162]
          Length = 441

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 89/388 (22%), Positives = 146/388 (37%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-YH 60
              LL   YE+QL +K + + +++  +      I   +P HYR +      H  D     
Sbjct: 72  GCQLLDMPYEKQLKKKQNHVSKLVQPYCRTEKIIGMEDPFHYRNKVHAVFGHRKDGTVIS 131

Query: 61  IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDY 109
             + Q T   + +D  +               L+ +  I+         L R  L +  Y
Sbjct: 132 GTYQQGTHFIVPVDECLIEDKRADAIICDIRGLLKSFKIKTYNEDTGYGLFRHVLIRTGY 191

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
               S Q +V L+    +  +       LR         I  +           K  +  
Sbjct: 192 ---HSGQVMVVLVLGSPILPSKNNFVKALRKLHPEITTIILNVNDQKTSMVLGEKETVLY 248

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            + Y+++ L        +R    SF Q N      +    +  A    +  +++ YCG G
Sbjct: 249 GKGYIEDELC----GHTFRISSKSFYQVNPVQTEKLYAKAIELAGLTGKERVIDAYCGIG 304

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L+ +     V++VE+   +V+ A  N   N + NV+  R  +  F + M  E E   
Sbjct: 305 TIGLIASDKAKEVISVELNPDAVKDAIVNAKRNGIRNVRFYRNDASVFMRQMADEGE--- 361

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338
                        +F+DPPRSG D+  +  V       I+Y+SC P +L RDL  L+   
Sbjct: 362 ---------SADVVFMDPPRSGSDEKFLSSVVTLHPKRIVYVSCEPTTLARDLKYLTRHG 412

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366
           + +     FD FP T H+E  VLL RK 
Sbjct: 413 YRVRTAVPFDMFPATEHVETAVLLQRKN 440


>gi|315150202|gb|EFT94218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0012]
          Length = 456

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 147/389 (37%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSKKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEILYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  L   D FP T   E  V L RK
Sbjct: 428 KVYQVNYLQSVDMFPQTARCEVVVKLTRK 456


>gi|315143898|gb|EFT87914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2141]
          Length = 456

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 147/389 (37%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E +          +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKVLDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|227551663|ref|ZP_03981712.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecium TX1330]
 gi|257887201|ref|ZP_05666854.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,141,733]
 gi|257895737|ref|ZP_05675390.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com12]
 gi|293377654|ref|ZP_06623843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           PC4.1]
 gi|227179226|gb|EEI60198.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecium TX1330]
 gi|257823255|gb|EEV50187.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,141,733]
 gi|257832302|gb|EEV58723.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com12]
 gi|292643654|gb|EFF61775.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           PC4.1]
          Length = 457

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 155/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +YEQQL  K  ++  +M              +  +EP  YR +A+  +      L 
Sbjct: 88  LAHLKYEQQLVFKQKQVEHVMAKIAKMSEIPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              + + + + + I+ F     +I+  +  +   ++            E  LR  + +  
Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT        + + +A  E    +   +     +   +   +K K+   R
Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY++++L        YR    SF Q N     ++ +  +   +  + D +++ Y G G  
Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTI 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA   D+V  +E+   ++E A++N   N + NV      +++  +  +         
Sbjct: 324 GLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYEVGKAEKVMKKWQE-------- 375

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD  + +   + 
Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLFAEAGYA 431

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E     V+
Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455


>gi|251778308|ref|ZP_04821228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082623|gb|EES48513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 455

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 157/392 (40%), Gaps = 44/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSE-PIHYRMRAEFHIWHDG 55
             ++    Y++QL  K +R++  +         +    +     P  YR + +  I    
Sbjct: 80  GCSIQHMNYKKQLDFKWERVKDCIEKIGGLSKDLVKYPLGMGPNPYRYRNKVQLPIGKIN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLR 101
           +++    +  ++ + + +DY +    +   +  +  + +    +EP           +L+
Sbjct: 140 NEVVIGFYAPRSHDIIDLDYCLIQDKIADNVANITKQWIKKNNIEPATLDGQFNPNGILK 199

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             + +  +   ++D+ +V L+          E    + + +   K  +  I   N T + 
Sbjct: 200 HLMIRRGF---KTDEVMVVLVATTSNIPKLDEFKHIILENIKGIKSIVLNINPKN-TNVI 255

Query: 162 LDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
           L  +    Y ++ +        +     SF Q N      +    L   +  + + + + 
Sbjct: 256 LGEECITLYGEDTIKDYIGEFKFNISPLSFFQVNPIQTEILYNKALEYAELTENETVFDA 315

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  +L L++   +V  VEI + ++  A+ N   N+V+NV+     S+E        
Sbjct: 316 YCGTGTITLFLSQKAKKVYGVEIIESAIINAKENAKLNNVDNVEFFVGKSEEV------- 368

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
                + ++     +   + VDPPR G D   +  +       ++Y+SC+P +L RDL I
Sbjct: 369 -----IPNLINDGIKADIVVVDPPRKGCDVKLLEAIGEVKPKKVVYVSCDPSTLARDLKI 423

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L    + +  +   D FP T H+E  V L++K
Sbjct: 424 LNEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455


>gi|292670870|ref|ZP_06604296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC
           43541]
 gi|292647491|gb|EFF65463.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas noxia ATCC
           43541]
          Length = 465

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 142/387 (36%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++ + +              +   EP +YR + +F I  +  
Sbjct: 93  GCQLQHLSYEAQLDAKRAQVAEALTHIGKLSQIPVKETMRAEEPWNYRNKMQFPIGINKG 152

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDY 109
            +    F Q +   +            N L   M          +  E   +  +  I  
Sbjct: 153 KILVGCFAQGSHNIIDTKNCHIQHTANNDLANAMRDIVEHLHIPVYNEDTHKGVMRHIIG 212

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTKICL 162
              +++  +  ++         ++    LR+ L       Q        +     T++  
Sbjct: 213 RVGRNNDLMAVIVTATKHLPRAKDVVRMLRERLPNLVSIHQNIQTYHNNVIMGRDTQLLW 272

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            R  + + L      L +     SF Q N      + E  LA A       +++ YCG G
Sbjct: 273 GRPTIIDSLGR----LNFHISPRSFFQVNTRQAERLYEQALAYADLHGTETVIDAYCGTG 328

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L LA+   +V  +EI +P++  AR N   NHV N + +   +     A+ +      
Sbjct: 329 TITLFLAQRARKVYGIEIVQPAILDARKNARDNHVKNAEFIVGDATAVMPALYK------ 382

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338
                    R   + +DPPR+G ++  +          I+Y+SCNP +L RDL+IL    
Sbjct: 383 ------QGIRPDVVVIDPPRAGCNETVLCTFANMRPQRIIYVSCNPATLARDLAILKELG 436

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +  + +   D FP T H+E   L+ +K
Sbjct: 437 YITQEVQPVDLFPQTSHVENVALITKK 463


>gi|255308421|ref|ZP_05352592.1| putative RNA methyltransferase [Clostridium difficile ATCC 43255]
          Length = 452

 Score =  288 bits (737), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 152/388 (39%), Gaps = 41/388 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55
            G  + D  Y +QL  K + ++Q++              I    P  YR +A+F I  + 
Sbjct: 80  GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  + ++T + +  +  +    +           I A  + +        L+R  +
Sbjct: 140 GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +I + T +    +V            +E A  L++ +   K  +  + + + T   L R
Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGR 255

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           +    Y D ++      L++     SF Q N      + + VL  A       + ++YCG
Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKVLEYANLNDTDTVFDIYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    M RE   
Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336
                          + VDPPR G D+  +  +       I+Y+SCNP +L RDL  L+ 
Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDYLNV 423

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
                      D FP++ H+E    +++
Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETVAKIIK 451


>gi|283795951|ref|ZP_06345104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
 gi|291076596|gb|EFE13960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
          Length = 461

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 142/386 (36%), Gaps = 42/386 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHI 61
              L   YE+QLA K + +  ++         I    P HYR +      HD   +    
Sbjct: 92  CQYLHLSYEKQLAVKQEMINGLLKGLCPVKPIIGMENPYHYRNKVHAVFGHDRRGNAVSG 151

Query: 62  MFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYL 110
           ++ + T E + ++  +      + +            I          LLR  L +  + 
Sbjct: 152 VYKEGTHELVPVETCLIEDEKADEIIGTIRGMLRSFKIRTFDEDTGYGLLRHVLVKRGFA 211

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLD 163
           T +    +VT      +  +       LR+        IQ +           K  +   
Sbjct: 212 TGEIMVVLVTA---SPVFPSKNHFVKALREKHPEITTIIQNVNGRSTSMVLGEKEHVLWG 268

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222
           + Y+++ L        +R    SF Q N      +    +  A    +  +L+ YCG G 
Sbjct: 269 KGYIEDILC----GHRFRISSRSFYQVNPVQTEKLYNKAMELAGLTGRETVLDAYCGIGT 324

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             +  +    RV+ VE+ + +V  A  N   N + N++     +  F   M  + E    
Sbjct: 325 IGITASGRAGRVIGVELNRDAVRDAVQNAKRNEIKNIEFYCNDAGRFMSRMAADGE---- 380

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILS-TTH 339
                   R   +F+DPPRSG  +  +    QA P  ++YISC P++L RDL +     +
Sbjct: 381 --------RLDVVFMDPPRSGSTEEFIQAAAQAGPRTVVYISCGPETLARDLRVFEKKGY 432

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
                   D FP+T H EC V L RK
Sbjct: 433 KAREAWPVDLFPWTGHCECVVKLERK 458


>gi|283471167|emb|CAQ50378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 453

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNKVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMVIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAELTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 TGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +LS 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLSE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|296184699|ref|ZP_06853110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           carboxidivorans P7]
 gi|296050481|gb|EFG89904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           carboxidivorans P7]
          Length = 463

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 152/390 (38%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K  R++  +       +        I  ++P  YR + +  +   
Sbjct: 90  GCQLQHYSYQAQLDFKKQRVKDCIERIGKLKISEVNLHDTIGMNDPYRYRNKVQLPVGEK 149

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAK 103
             ++    + Q+T E + +D         + ++  + + ++               +R  
Sbjct: 150 NGEVNIGFYAQRTHEIINMDTCNIQHEAADKVLKLIKSWMKKYNIKSYNEQLHTGSIRHI 209

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +  + T++    +VT        +   E    L ++       IQ +  + KT + L 
Sbjct: 210 MVRKAFKTNEVMVVVVTRSNELPHKEELVEM---LLESKENIVSIIQNVN-SKKTNVILG 265

Query: 164 RDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
            + +     + ++       +     SF Q N      +    L        + + + YC
Sbjct: 266 IECITLWGKDNISDYIGDFKFNISPLSFFQVNPVQTEVLYNKALEYASLTGNETVFDAYC 325

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL L++   +V  +EI   ++E A+ N   N++NN + +   S++          
Sbjct: 326 GTGTISLFLSQKSKKVYGIEIIPQAIENAKINAKQNNINNAEFIVGESEKI--------- 376

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
              + ++     +   + VDPPR G + + +  +   A   I+Y+SC+P +L RDLSIL 
Sbjct: 377 ---IPELIKKGIKADVVVVDPPRKGCEKSLLEAIAQMAPERIVYVSCDPGTLARDLSILD 433

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365
              +T   +   D FP T H+E  V L RK
Sbjct: 434 ELGYTATEIQPVDMFPQTAHVETVVKLYRK 463


>gi|255094342|ref|ZP_05323820.1| putative RNA methyltransferase [Clostridium difficile CIP 107932]
 gi|255316095|ref|ZP_05357678.1| putative RNA methyltransferase [Clostridium difficile QCD-76w55]
 gi|255518756|ref|ZP_05386432.1| putative RNA methyltransferase [Clostridium difficile QCD-97b34]
 gi|260684898|ref|YP_003216183.1| putative RNA methyltransferase [Clostridium difficile CD196]
 gi|260688556|ref|YP_003219690.1| putative RNA methyltransferase [Clostridium difficile R20291]
 gi|260211061|emb|CBA66419.1| putative RNA methyltransferase [Clostridium difficile CD196]
 gi|260214573|emb|CBE07127.1| putative RNA methyltransferase [Clostridium difficile R20291]
          Length = 452

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 151/388 (38%), Gaps = 41/388 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55
            G  + D  Y +QL  K + ++Q++              I    P  YR +A+F I  + 
Sbjct: 80  GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  + ++T + +  +  +    +           I A  + +        L+R  +
Sbjct: 140 GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +I + T +    +V            +E A  L++ +   K  +  + + + T   L R
Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGR 255

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           +    Y D ++      L++     SF Q N      + +  L  A       + ++YCG
Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYANLNDTDTVFDIYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    M RE   
Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVGKAEEIVPKMYRE--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336
                          + VDPPR G D+  +  +       I+Y+SCNP +L RDL  L+ 
Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDYLNV 423

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
                      D FP++ H+E    +++
Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETVAKIIK 451


>gi|314936049|ref|ZP_07843398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655866|gb|EFS19609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
           subsp. hominis C80]
          Length = 454

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 141/387 (36%), Gaps = 38/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++  +               I    P  YR +++  +  D +
Sbjct: 81  GCQLQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIGMDHPWRYRNKSQLPVGKDKN 140

Query: 57  -DLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  + Q++ + + +D  +                +N L + +      + LLR  +
Sbjct: 141 NKTIMGYYRQRSHDIIDMDSCLIQDEKQQELMNDIKQWLNELNVSIYNEKNKKGLLRHVV 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  + T++     VT                RL +         Q I  ++   I   +
Sbjct: 201 IRTSHYTNEVMIIFVTNCSK---FKEAETLVHRLTEVYPNITSIKQNINNSHSNVIMGKQ 257

Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               Y  +++T      I+   + SF Q N+     + +  +   +    + +L+ YCG 
Sbjct: 258 SMTLYGKDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAIDYAQLSGNEIVLDTYCGI 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L +A     V  VEI   +++ A+ N   NH +N       ++E     ++     
Sbjct: 318 GTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVIIEWKQ----- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                         I VDPPR G D   +  +   A   I+YISCNP +  RD  +L+  
Sbjct: 373 -------KGIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQRDAQLLANL 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP+T H+E   L  RK
Sbjct: 426 YYLKEITPVDMFPHTTHIETVALFERK 452


>gi|227519503|ref|ZP_03949552.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104]
 gi|227073028|gb|EEI10991.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecalis TX0104]
          Length = 456

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 147/389 (37%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPVNYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEILYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  L   D FP T   E  V L RK
Sbjct: 428 KVYQVNYLQSVDMFPQTARCEVVVKLTRK 456


>gi|317473452|ref|ZP_07932746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
           3_2_56FAA]
 gi|316899102|gb|EFV21122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
           3_2_56FAA]
          Length = 458

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 159/392 (40%), Gaps = 45/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWH- 53
             TL    YE+QL  K ++++  +           +        EP +YR +A+F +   
Sbjct: 81  GCTLQHLSYEKQLEYKFNKVKNCLERIGGIENAGSLMEPIYGMDEPYYYRNKAQFPVGRN 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRA 102
               L    +  +T   +   +      +   +            +E         L+R 
Sbjct: 141 KDGKLITGFYAGRTHSIIDCTHCSIQHPVNEEILSKVLDYMERNHVEPYDEKNHRGLVRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
            + ++ ++T +    +V     +       L D+ +E    +        ++       N
Sbjct: 201 IMTRVGFVTGEIMVCLVVNGRKKDLLNLSELVDSLKEI-EGMTSICVNSNWEKTNRIMGN 259

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215
           K +      Y+ + +      + Y+    SF Q N      + E  L        + + +
Sbjct: 260 KVEEVYGPAYIYDYIG----NVKYQIGPLSFFQVNPRQTKVLYEKALQYAGLCGNETVWD 315

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G  SL LA+   +V  VEI K ++E AR N   NH++NV+     ++E      R
Sbjct: 316 LYCGIGTISLFLAQKAKQVYGVEIVKEAIEDARLNAEMNHMDNVQFFVGKAEEVLP---R 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333
           E E N              I VDPPR G D A +  MV+  P  I+Y+SC+P +L RDL 
Sbjct: 373 EYEKN--------GVYADVIVVDPPRKGCDRALLDTMVKMGPERIVYVSCDPGTLARDLK 424

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L    +++E++A+ DQF +T H+E   LL +
Sbjct: 425 VLGGEGYSVEKVAVVDQFGHTGHVETVCLLSK 456


>gi|315174955|gb|EFU18972.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1346]
          Length = 456

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNKFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRVINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVTNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|295090952|emb|CBK77059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium cf.
           saccharolyticum K10]
          Length = 461

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 142/386 (36%), Gaps = 42/386 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHI 61
              L   YE+QLA K + +  ++         I    P HYR +      HD   +    
Sbjct: 92  CQYLHLSYEKQLAVKQEMINGLLKGLCPVKPIIGMENPYHYRNKVHAVFGHDRRGNAVSG 151

Query: 62  MFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYL 110
           ++ + T E + ++  +      + +            I          LLR  L +  + 
Sbjct: 152 VYKEGTHELVPVETCLIEDEKADEIIGTIRGMLRSFKIRTFDEDTGYGLLRHVLVKRGFA 211

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLD 163
           T +    +VT      +  +       LR+        IQ I           K  +   
Sbjct: 212 TGEIMVVLVTA---SPVFPSKNHFVKALREKHPEITTIIQNINGRSTSMVLGEKEHVLWG 268

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222
           + Y+++ L        +R    SF Q N      +    +  A    +  +L+ YCG G 
Sbjct: 269 KGYIEDILC----GHRFRISSRSFYQVNPVQTEKLYNKAMELAGLTGRETVLDAYCGIGT 324

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             +  +    RV+ VE+ + +V  A  N   N + N++     +  F   M  + E    
Sbjct: 325 IGITASGRAGRVIGVELNRDAVRDAVQNAKRNEIKNIEFYCNDAGRFMSRMAADGE---- 380

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILS-TTH 339
                   R   +F+DPPRSG  +  +    QA P  ++YISC P++L RDL +     +
Sbjct: 381 --------RLDVVFMDPPRSGSTEEFIQAAAQAGPRTVVYISCGPETLARDLRVFEKKGY 432

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
                   D FP+T H EC V L RK
Sbjct: 433 KAREAWPVDLFPWTGHCECVVKLERK 458


>gi|293571847|ref|ZP_06682863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E980]
 gi|291608101|gb|EFF37407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E980]
          Length = 457

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 156/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +YEQQL  K  ++  +M              +  +EP  YR +A+  +      L 
Sbjct: 88  LAHLKYEQQLVFKQKQVEHVMAKIAKMSEIPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              + + + + + I+ F     +I+  +  +   ++            E  LR  + +  
Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT        + + +A  E    +   +     +   +   +K K+  DR
Sbjct: 208 HYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYDR 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY++++L        YR    SF Q N     ++ +  +   +  + D +++ Y G G  
Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIKFAELDKKDIVIDAYSGIGTI 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA   D+V  +E+   ++E A++N   N + NV      +++  +  +         
Sbjct: 324 GLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYEVGKAEKVMKKWQE-------- 375

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD  + +   + 
Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLFAEAGYA 431

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E     V+
Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455


>gi|242371794|ref|ZP_04817368.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
 gi|242350495|gb|EES42096.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
           M23864:W1]
          Length = 453

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 148/387 (38%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQ--VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K +++  +      F+    N  +   +P  YR +++  +  + D
Sbjct: 82  GCQLQHMTYQAQLDMKKEQVVNLFHRKGPFKDTPINPTVGMEQPWRYRNKSQIPVGKNKD 141

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
                  + Q++ + + +D+ +                +N L I +        L+R  +
Sbjct: 142 GQVIMGFYRQRSHDIIDMDHCLIQDEQHQEVMNHVKQWLNELNISIYDEQSKTGLIRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  + T   ++ +V  + +            +L++A        Q I  ++ + + + R
Sbjct: 202 VRTGHHT---NEMMVIFVTNGKKFKHSEMLVEKLKNAFPNITSIKQNINDSH-SNVIMGR 257

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
                Y  E++      + +   + SF Q N+     + +  +   +    + +L+ YCG
Sbjct: 258 HSVTLYGKEKIVDQLSEVTFNISDQSFYQINSAQTEKLYQKAIDYAQLTGEEIVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N +NN       +++     +     
Sbjct: 318 IGTIGLYMAPQAKHVYGVEVVPSAIKDAEENATKNQLNNTTFECGKAEDIILEWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L++
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIKTLLKLNPKRIVYISCNPSTQQRDAQMLAS 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + +  +   D FP T H+E   L  R
Sbjct: 426 HYHLVEITPVDMFPQTTHIETVALFER 452


>gi|206968113|ref|ZP_03229069.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
 gi|206737033|gb|EDZ54180.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
          Length = 459

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 157/384 (40%), Gaps = 32/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    V +  E   AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGDEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKCHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                 +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++ +
Sbjct: 381 -----GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSYEV 435

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP+T H+E  V L  K
Sbjct: 436 EYVQPVDMFPHTAHVENVVRLNLK 459


>gi|255523417|ref|ZP_05390386.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
 gi|255512875|gb|EET89146.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
          Length = 458

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 152/390 (38%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K  R++  +       +        I  ++P  YR + +  +   
Sbjct: 85  GCQLQHYSYQAQLDFKKQRVKDCIERIGKLKISEVNLHDTIGMNDPYRYRNKVQLPVGEK 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAK 103
             ++    + Q+T E + +D         + ++  + + ++               +R  
Sbjct: 145 NGEVNIGFYAQRTHEIINMDTCNIQHEAADKVLKLIKSWMKKYNIKSYNEQLHTGSIRHI 204

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +  + T++    +VT        +   E    L ++       IQ +  + KT + L 
Sbjct: 205 MVRKAFKTNEVMVVVVTRSNELPHKEELVEM---LLESKENIVSIIQNVN-SKKTNVILG 260

Query: 164 RDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
            + +     + ++       +     SF Q N      +    L        + + + YC
Sbjct: 261 IECITLWGKDNISDYIGDFKFNISPLSFFQVNPVQTEVLYNKALEYASLTGNETVFDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL L++   +V  +EI   ++E A+ N   N++NN + +   S++          
Sbjct: 321 GTGTISLFLSQKSKKVYGIEIIPQAIENAKINAKQNNINNAEFIVGESEKI--------- 371

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
              + ++     +   + VDPPR G + + +  +   A   I+Y+SC+P +L RDLSIL 
Sbjct: 372 ---IPELIKKGIKADVVVVDPPRKGCEKSLLEAIAQMAPERIVYVSCDPGTLARDLSILD 428

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365
              +T   +   D FP T H+E  V L RK
Sbjct: 429 ELGYTATEIQPVDMFPQTAHVETVVKLYRK 458


>gi|227363773|ref|ZP_03847880.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           reuteri MM2-3]
 gi|325682984|ref|ZP_08162500.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           MM4-1A]
 gi|227071130|gb|EEI09446.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           reuteri MM2-3]
 gi|324977334|gb|EGC14285.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           MM4-1A]
          Length = 480

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 155/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +Y+ QL  K  ++++++    +  +++       +P HYR +A+  +      L  
Sbjct: 109 LGHLKYDAQLKFKQHQIQELLAKAHLDEIEVLPTMGMEKPYHYRNKAQVPVKMVHGQLET 168

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
             + + +   + I+ F      I+  ++ +   +R            + ++R  + +  Y
Sbjct: 169 GFYKRGSHNLVPIEDFYIQDPEIDKAIVVVRDLLRQYHITPYDEQTGKGVIRTVMVRRGY 228

Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
            + +    +VT    L   + + D        ++  +     +       NK K     D
Sbjct: 229 YSHEMMVVLVTNTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKRTNRLLGNKNKTLWGAD 288

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
            + ++L      + +     SF Q N      + +  +  A       +++ YCG G  S
Sbjct: 289 EIHDQLL----GIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTIS 344

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L +A+H  +V  VEI   ++E A++N   N + N K V   ++E     + E        
Sbjct: 345 LAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAEEQFAKWQAE-------- 396

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTI 341
                 +   + VDPPR GL ++ +          ++Y+SCNP +L RD+   +   + +
Sbjct: 397 ----GLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDIKRFADQGYHV 452

Query: 342 ER-LALFDQFPYTRHMECGVLLVR 364
            + +   DQFP T H+E   +L R
Sbjct: 453 TKPIQPVDQFPQTTHVESVTVLER 476


>gi|310827128|ref|YP_003959485.1| RNA methyltransferase [Eubacterium limosum KIST612]
 gi|308738862|gb|ADO36522.1| RNA methyltransferase [Eubacterium limosum KIST612]
          Length = 446

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 152/386 (39%), Gaps = 43/386 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              LL  QY+ QLA K   +   +           N  I    P  YR +A+F I   G 
Sbjct: 79  GCQLLQVQYDAQLAIKRKIVTDALERIGGIKDVPVNAVIGMETPYRYRNKAQFKISGKG- 137

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLI-------NALMIEMMATIRLEPLLRAKLFQIDY 109
                 F +++ + + I+  +             NAL+ +    +  E      L  I  
Sbjct: 138 ---VGFFAKRSHQIVPIEDCLTQPESCVQVIETFNALLKDGCFELYDEQQHTGFLRGIIQ 194

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
            T++  + ++ ++ +        +    + + +   +     +           +  + L
Sbjct: 195 RTNEQGENMIVIVGNGKKLKHKDKILQAITERIPEVRSVYLNVNTTRGNAVLGRENHLLL 254

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
               ++ER+      L +    NSF Q N      + + V         + L +LYCG G
Sbjct: 255 GTPQIEERIG----DLSFLISPNSFFQVNTRQTKVLYDLVKRMATLTGAETLFDLYCGTG 310

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LAR   RV  +EI + +V  A+ N   N + N++ ++  S+     +  E     
Sbjct: 311 TIGLYLAREAARVYGIEIVENAVLDAQENAERNQIKNIRFIQGKSETEAPKLAEE----- 365

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338
                        I +DPPR G D A + M++  + P ++Y+SCNP +L RDL IL    
Sbjct: 366 -------GVHPDVIVLDPPRKGCDPALLEMIENLSVPKVVYVSCNPSTLARDLKILREYG 418

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + ++ +   D FP T H+E  VL+ +
Sbjct: 419 YQVQEVQPVDLFPGTGHVETVVLMSK 444


>gi|153815457|ref|ZP_01968125.1| hypothetical protein RUMTOR_01692 [Ruminococcus torques ATCC 27756]
 gi|145847099|gb|EDK24017.1| hypothetical protein RUMTOR_01692 [Ruminococcus torques ATCC 27756]
          Length = 500

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/411 (21%), Positives = 149/411 (36%), Gaps = 54/411 (13%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51
            G  + +  YE+QL  K  ++R  +                  I    P +YR +A+F  
Sbjct: 99  GGCQIQEMSYEKQLEFKERKVRGNLERIGGFPSELLERTKEPIIGMETPFYYRNKAQFPF 158

Query: 52  WHDG-DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99
             D   +     +  +T + +     + G+ +           +    I          L
Sbjct: 159 GTDKEGNPVTGFYAGRTHDIIANTNCILGAAVNEHILESILDFMKKYKIRSYDEKTGTGL 218

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR----------KYQI 149
            R  L +  + T +     V           W      L + L               + 
Sbjct: 219 FRHVLLRYGFTTKEIMVCFVVNKDKADKSGEWFPHQKELVEELAKIDGMTSITASPNTKR 278

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
             +   +  ++   + Y+ + +     ++ Y+    SF Q N      +    L    G+
Sbjct: 279 TNVIMGDTFEVLWGQGYITDYIG----SVKYQISPLSFYQVNPVQTEKLYSQALE-YAGL 333

Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +GD  + +LYCG G  SL LA+   +V  VEI  P+++ AR N   N + N +     S+
Sbjct: 334 KGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENAQLNGIENAQFFVGKSE 393

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325
           E      ++ E    +           I VDPPR G D   +  +       I+Y+SC+ 
Sbjct: 394 EILPKYYKDYE----EQHGGEKAHADVIVVDPPRKGCDAKLLDTILKMQPERIVYVSCDS 449

Query: 326 DSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +L RDL IL            + IE+    DQFP T H+E  VL+ +K S
Sbjct: 450 ATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETIVLIQKKNS 500


>gi|257084323|ref|ZP_05578684.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           Fly1]
 gi|256992353|gb|EEU79655.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecalis
           Fly1]
          Length = 456

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 148/389 (38%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMENPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPSETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+   +V  ++    +++ AR+N     V N      ++++      +E  
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTIPAAIDDARFNAKRLGVMNTHYAVGTAEDLLPKWFKE-- 377

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+GLD   +  +   P   ++YISCN  +L RDL  L+
Sbjct: 378 ----------GFKPDAIVVDPPRTGLDRKLLTALLKQPPKKMVYISCNVSTLARDLVQLA 427

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ L   D FP T   E  V L RK
Sbjct: 428 KVYQVDYLQSVDMFPQTARCEVVVKLTRK 456


>gi|227543578|ref|ZP_03973627.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           reuteri CF48-3A]
 gi|300909393|ref|ZP_07126854.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           SD2112]
 gi|227186418|gb|EEI66489.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           reuteri CF48-3A]
 gi|300893258|gb|EFK86617.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           SD2112]
          Length = 478

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 155/386 (40%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +Y+ QL  K  ++++++    +  +++       +P HYR +A+  +      L  
Sbjct: 109 LGHLKYDAQLKFKQHQIQELLAKAHLDEIEVLPTMGMEKPYHYRNKAQVPVKMVHGQLET 168

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
             + + +   + I+ F      I+  ++ +   +R            + ++R  + +  Y
Sbjct: 169 GFYKRGSHNVVPIEDFYIQDPEIDKAIVVVRDLLRQYHITPYDEQTGKGVIRTVMVRRGY 228

Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
            + +    +VT    L   + + D        ++  +     +       +K K     D
Sbjct: 229 YSHEMMVVLVTNTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKRTNRLLGDKNKTLWGAD 288

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
            + ++L      + +     SF Q N      + +  +  A       +++ YCG G  S
Sbjct: 289 EIHDQLL----GIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTIS 344

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L +A+H  +V  VEI   ++E A++N   N + N K V   ++E            +   
Sbjct: 345 LAVAKHAKQVYGVEIVPAAIEDAKHNAKRNSIKNAKFVVGKAEE------------QFAK 392

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTI 341
                 +   + VDPPR GL ++ +          ++Y+SCNP +L RD+   +   + +
Sbjct: 393 WQAAGLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDIKRFADQGYHV 452

Query: 342 ER-LALFDQFPYTRHMECGVLLVRKP 366
            + +   DQFP T H+E   +L RK 
Sbjct: 453 TKPIQPVDQFPQTTHVESVTVLERKK 478


>gi|299535232|ref|ZP_07048556.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
 gi|298729353|gb|EFI69904.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
          Length = 455

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 139/386 (36%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIW-HDGD 56
              L    YE QL  K + +R +M          +      EP HYR +A+     ++  
Sbjct: 83  GCQLQHLSYEGQLKWKENMVRNVMHRIGKIHAPVHPVKGMKEPWHYRNKAQIPFSENEAG 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105
                 +  +T   + +D  +  +             +  L I        E +LR  + 
Sbjct: 143 QAIAGFYKTKTHSIVDMDRCLIQTGEADAILAGLKKELATLGIRSYNEHTHEGMLRHVVI 202

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +    T +    +VT    +      +E AI +   L      I     + KT +    D
Sbjct: 203 RKARATGEVMVVLVT----KKQKFPQKEAAITVIQKLVPNVTSIMQNVNSEKTNVIFGDD 258

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
               +  + +      + +     SF Q N      + +  L  A       +++ YCG 
Sbjct: 259 TINLWGKDVIIDTIGDVRFEISARSFYQVNPEQTEVLYKQALDYADLQGDERVIDAYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+    V+ VEI   ++E A+ N   N   N       ++E      +E    
Sbjct: 319 GTISLFLAQKAKTVMGVEIVPQAIEDAKRNALLNGFTNTYFEAGPAEEVIPRWYKE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-T 337
                         + VDPPR G D+A +  +  Q    ++Y+SCNP +L RDL IL   
Sbjct: 375 --------GKEADVLVVDPPRKGCDEALLTTILEQRPKRVVYVSCNPATLARDLRILEDG 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            +  + +   D FP++ H E    L 
Sbjct: 427 GYHTQEIQPVDMFPHSTHCEAVAWLK 452


>gi|15893813|ref|NP_347162.1| SAM-dependent methyltransferase [Clostridium acetobutylicum ATCC
           824]
 gi|50401652|sp|Q97LN4|Y523_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C0523
 gi|15023386|gb|AAK78502.1|AE007567_4 SAM-dependent methyltransferase related to
           tRNA(uracyl-5-)-methyltransferase (trmA family)
           [Clostridium acetobutylicum ATCC 824]
          Length = 460

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 147/389 (37%), Gaps = 42/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L   +Y +QL  K +++ + +      +L        I   +P  YR + +  +   
Sbjct: 85  GCQLQHLKYTEQLEFKKNKVVECLKRIGKLDLSSVRINETIGMEDPYFYRNKVQLPVGET 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
             +     + +++ E + +D                   I    IE       +  LR  
Sbjct: 145 AGEAKIGFYRERSHEIIEVDKCFIQDDSANEIILLIKRWIKEFNIEGYNEYSGKGTLRHI 204

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +  + T Q    +VT   +       +E    +   +   K  IQ I    KT + L 
Sbjct: 205 MIRKAFKTGQIMLVLVTNTENVP---HKKELIHMITTEIQGIKGIIQNINN-KKTNVILG 260

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           +     + +  +        +     SF Q N      +    L        +++ + YC
Sbjct: 261 QREITLWGESTIEDYIGEFKFNISSKSFFQVNPIQTEKLYSAALKYAGLTGKEVVFDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL L+++  +V  VEI   ++E A+ N   N + N + +   S+E          
Sbjct: 321 GTGTISLFLSQNAKKVYGVEIIPEAIENAKINAKQNGIENTEFIVGKSEE---------- 370

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
              +  +       + + VDPPR G + + +  +   +   I+Y+SC+P +L RDL ILS
Sbjct: 371 --EIPKLIEKGIAPEVVVVDPPRKGCEKSLLHSIAEASPKTIVYVSCDPATLSRDLGILS 428

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364
              + +  +   D FP T H+E  VL+ R
Sbjct: 429 ELGYEVNEVQPVDMFPMTGHVETIVLIKR 457


>gi|228476330|ref|ZP_04061031.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
 gi|228269613|gb|EEK11119.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
          Length = 454

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 143/387 (36%), Gaps = 38/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++  +               I    P  YR +++  +  D +
Sbjct: 81  GCQLQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIGMDYPWRYRNKSQLPVGKDKN 140

Query: 57  -DLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  + Q++ + + +D  +                +N L + +      + LLR  +
Sbjct: 141 NKTIMGYYRQRSHDIIDMDSCLIQDEKQQELMNDIKQWLNELNVSIYNEKNKKGLLRHVV 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  + T   ++ ++  + +            RL +         Q I  ++   I   +
Sbjct: 201 IRTSHYT---NEVMIIFVTNGSKFKEAETLVHRLTEVYPNITSIKQNINNSHSNVIMGKQ 257

Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               Y  +++T      I+   + SF Q N+     + +  +   +    + +L+ YCG 
Sbjct: 258 SMTLYGKDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAIDYAQLSGNEIVLDTYCGI 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L +A     V  VEI   +++ A+ N   NH +N       ++E     ++     
Sbjct: 318 GTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFECGKAEEVIIEWKQ----- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                         I VDPPR G D   +  +   A   I+YISCNP +  RD  +L+  
Sbjct: 373 -------KGIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQRDAQLLANL 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP+T H+E   L  RK
Sbjct: 426 YYLKEITPVDMFPHTTHIETVALFERK 452


>gi|257869135|ref|ZP_05648788.1| RNA methyltransferase [Enterococcus gallinarum EG2]
 gi|257803299|gb|EEV32121.1| RNA methyltransferase [Enterococcus gallinarum EG2]
          Length = 458

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 157/390 (40%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    YE+QL  K D L+Q +  F+    Q       I   EP HYR +A+F + +D
Sbjct: 84  GCQLQHLVYEKQLDFKKDLLKQALTKFKPKGYQKYILKDTIGMEEPWHYRNKAQFQLRYD 143

Query: 55  GDDLY--HIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                    +++  +   + ID  +               L+N   + +    +   +LR
Sbjct: 144 TKSKRIEAGLYEMDSHRLVAIDDCLVQEKATQDVINGLVQLLNKYQLPIYDERKNSGILR 203

Query: 102 AKLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             + ++   T +     +T    L     L     +   ++   +   + +   +   ++
Sbjct: 204 TLMVRVGRATGEVQVVFITNSSKLPQKNALIREINQRMPQVVSIMQNVQSKKTSVIMGDE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
           T     ++ ++ERL    + L +     +F Q N      + +  + A    + + +++ 
Sbjct: 264 TLHLWGKEAIEERL----QELTFDLSPRAFFQLNPQQTSILYDEAIKALALTKNETVVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L LA+H   V  ++I   ++E A+ N      NN      ++++        
Sbjct: 320 YCGVGTIGLSLAKHAKEVRGMDIIPQAIENAKENARRIQANNTHYETGTAEDL------- 372

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                L       +R  +I VDPPR+GLDD  +  + A P   ++YISCN  +L RDL  
Sbjct: 373 -----LPKWFAAGFRPDSIVVDPPRTGLDDHLLQALVAQPPKKMVYISCNVSTLARDLVK 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L++   IE L   D FP T   E  V L R
Sbjct: 428 LASVFKIEYLQSVDMFPQTARCEVVVKLTR 457


>gi|257869904|ref|ZP_05649557.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum
           EG2]
 gi|257804068|gb|EEV32890.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum
           EG2]
          Length = 467

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 156/387 (40%), Gaps = 46/387 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +YE+QLA K  ++  ++    ++P ++    I   +P  YR +A+  +      L 
Sbjct: 97  LSHLKYEKQLAFKQQQVENVLAKVAKMPQVEVLPTIGMEQPFGYRNKAQIPVQKIKGQLT 156

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108
              + + +   + I+ F      I+  ++ +   ++            E  LR  + +  
Sbjct: 157 TGFYRKNSHTLVPIEDFYIQDPAIDQAIVTVRNILQRFNVKAYNEEAHEGFLRHVVIRRG 216

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKIC 161
           +    S + +V L+  +       E A  + + L      IQ I          +  K+ 
Sbjct: 217 H---HSGEMMVILVTRKAKFFKGEEIAEVIHEELPEVVSVIQNINEEKTNVIMGDVEKVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
             +  +D++L        ++    SF Q N      + +           D +++ Y G 
Sbjct: 274 YGKASIDDQLFDK----TFQISAKSFYQVNTAQTEVLYQKAFELADLQPDDIVVDAYAGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + LA     VL +E+   +VE A+ N A N + NV      +++      RE    
Sbjct: 330 GTIGISLADRVQEVLGMEVVAEAVEDAKANAARNGLENVHYFVGKAEKIMPQWLRE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-ST 337
                     +   +FVDPPR GL+ + +    A     I+YISCNP +L RDL++    
Sbjct: 386 --------GIQPTVVFVDPPRKGLEASFIETTAAVKPERIVYISCNPATLARDLALFAEE 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  +++   D FP T H+EC VL+ R
Sbjct: 438 GYVTKQVQPVDLFPQTTHVECVVLMSR 464


>gi|328957913|ref|YP_004375299.1| putative RNA methyltransferase [Carnobacterium sp. 17-4]
 gi|328674237|gb|AEB30283.1| putative RNA methyltransferase [Carnobacterium sp. 17-4]
          Length = 458

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/384 (23%), Positives = 158/384 (41%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGDDLY 59
           L   +Y  QL  K  ++   M    ++P + ++     + P  YR +A+  +    D L 
Sbjct: 90  LQHMRYPAQLNFKKQQVMNSMQRIAKLPEVPVYDTIGMANPSGYRNKAQIPVRKINDKLT 149

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQID 108
              F + + E + ++ F      I+  +I +   +R   +           LR  + +  
Sbjct: 150 TGFFRKNSHEVIPMENFYIQDPKIDETIIAVRDIMREYGVKPYNENENTGNLRHIIVRRG 209

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165
           Y T +    +VT      L    +     L +A+      +Q +   + T + L  D   
Sbjct: 210 YYTGEIMIVLVTRTA--KLFPTSKIIPDIL-EAIPEVVSIVQNVNPKH-TNVILGDDAIV 265

Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223
            Y +++         +     SF Q N      + + VL  A    +  +++ Y G G  
Sbjct: 266 LYGEDKFRDTLLGNTFEISHRSFYQVNPLQTEKLYQTVLDFAELTGEETVIDAYSGIGTI 325

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L LA++   V  +EI +P+VE A+ N   N++ NV     +++E       E       
Sbjct: 326 TLTLAKNAKHVYGIEIIEPAVENAKANAELNNIENVTFEAGAAEEVMVQWSEE------- 378

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHT 340
                      + VDPPR GL+      V A     ++Y+SCNP +L RDL++L    +T
Sbjct: 379 -----GRTADLLVVDPPRKGLEKEFTEAVIAMKPTKMVYVSCNPATLARDLALLTEGGYT 433

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E   LLVR
Sbjct: 434 VKKVQPVDLFPQTTHVESVTLLVR 457


>gi|158319641|ref|YP_001512148.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158139840|gb|ABW18152.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs]
          Length = 452

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 147/386 (38%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
              ++   YEQQL  K + + + +        V +  +    P  YR +A+F +      
Sbjct: 80  GCQIMHMDYEQQLRTKRNTVVEALKRIGKIDAVVHPTLGMDNPYEYRNKAQFPVGILDGK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                + + + E +  +Y    + +           I+   + +        L+R  + +
Sbjct: 140 SILGFYKKGSHEIVDTEYCHIQAPINTKIVQVIKKYIDDFDVAVYDEKEHSGLIRHVVTK 199

Query: 107 IDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           + + T +    +VT      Y   L +  +E    L+  +     +   +   + T    
Sbjct: 200 VGFATGEVMVIMVTNGKEFPYKDKLIEMLKENVEGLKSVVQNINMKNTNVIFGDTTFTLY 259

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
             D + + +      L +     SF Q N      + E  L  A       + ++YCG G
Sbjct: 260 GEDQIVDYIG----DLKFNISARSFYQVNPAQTKVLYEKALEYADLTGNERVFDIYCGIG 315

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA+    V  +EI   ++E AR N   NH+ N K     +++    + +      
Sbjct: 316 TISLFLAKKAKEVHGIEIIDAAIEDARENARINHLTNTKFYVGKAEDVVPKLYK------ 369

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
                        + VDPPR G +++ +  +   A   ++Y+SCNP +L RDL+ L    
Sbjct: 370 ------SGLVADVVVVDPPRKGCEESVLETIVNMAPKRVVYVSCNPATLARDLAYLDEKG 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +    +   D F ++ H+EC V L R
Sbjct: 424 YKTVEVQPVDMFSHSSHVECCVSLER 449


>gi|148544651|ref|YP_001272021.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184154004|ref|YP_001842345.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|148531685|gb|ABQ83684.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri DSM
           20016]
 gi|183225348|dbj|BAG25865.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
          Length = 459

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 155/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +Y+ QL  K  ++++++    +  +++       +P HYR +A+  +      L  
Sbjct: 88  LGHLKYDAQLKFKQHQIQELLAKAHLDEIEVLPTMGMEKPYHYRNKAQVPVKMVHGQLET 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
             + + +   + I+ F      I+  ++ +   +R            + ++R  + +  Y
Sbjct: 148 GFYKRGSHNLVPIEDFYIQDPEIDKAIVVVRDLLRQYHITPYDEQTGKGVIRTVMVRRGY 207

Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
            + +    +VT    L   + + D        ++  +     +       NK K     D
Sbjct: 208 YSHEMMVVLVTNTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKRTNRLLGNKNKTLWGAD 267

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
            + ++L      + +     SF Q N      + +  +  A       +++ YCG G  S
Sbjct: 268 EIHDQLL----GIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTIS 323

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L +A+H  +V  VEI   ++E A++N   N + N K V   ++E     + E        
Sbjct: 324 LAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAEEQFAKWQAE-------- 375

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTI 341
                 +   + VDPPR GL ++ +          ++Y+SCNP +L RD+   +   + +
Sbjct: 376 ----GLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDIKRFADQGYHV 431

Query: 342 ER-LALFDQFPYTRHMECGVLLVR 364
            + +   DQFP T H+E   +L R
Sbjct: 432 TKPIQPVDQFPQTTHVESVTVLER 455


>gi|331083695|ref|ZP_08332806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330403906|gb|EGG83458.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 458

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 143/385 (37%), Gaps = 39/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
              L    YE+QL  K +++   +              I    P  YR +A+F +  D  
Sbjct: 81  GCQLQFLTYEKQLEFKKNKVVGNLERIGGFSDIPVEKVIGMENPWRYRNKAQFPVGKDKE 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
            +L    +  +T   +       G  +           +    +E    +  + L+R  L
Sbjct: 141 GNLITGFYAGRTHSIIPNTNCYLGVEVNEEILNAVLDYMRENHVEPYDEVTGKGLVRHIL 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKIC 161
            +  + T +    I+             E    +            +   +   N+    
Sbjct: 201 IRYGFKTKEIMVCIIINGRKIPNAAGLVEKLKDISGMTSITLNVNTKRNNVILGNEILPL 260

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             +DY+ + +      + Y+    SF Q N      +    L  A    +  + +LYCG 
Sbjct: 261 WGKDYITDYIG----EVKYQISPLSFYQVNPVQTEKLYGTALKYAGLTGKETVWDLYCGI 316

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VEI   ++E AR N   N + N +     ++E   A  +E    
Sbjct: 317 GTISLFLAQKAKKVYGVEIVPAAIEDARKNAEINGIENAEFFVGKAEEVLPAKYKED--- 373

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338
                         I VDPPR G D A +  + +     I+Y+SC+  +L RDL +L   
Sbjct: 374 --------GVYADVIVVDPPRKGCDGALIETMLSMKPERIVYVSCDSATLARDLKVLCEK 425

Query: 339 -HTIERLALFDQFPYTRHMECGVLL 362
            + +E++A+ D FP + H+E  VL+
Sbjct: 426 EYQVEKVAVCDMFPGSVHVETVVLM 450


>gi|282917244|ref|ZP_06324999.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus D139]
 gi|283771047|ref|ZP_06343938.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus H19]
 gi|282318871|gb|EFB49226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus D139]
 gi|283459641|gb|EFC06732.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 453

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    + +L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEIVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|49484138|ref|YP_041362.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257426029|ref|ZP_05602451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428702|ref|ZP_05605097.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431312|ref|ZP_05607688.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257436934|ref|ZP_05612976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus M876]
 gi|282904528|ref|ZP_06312413.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906301|ref|ZP_06314153.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282909217|ref|ZP_06317033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911522|ref|ZP_06319322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914695|ref|ZP_06322480.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919732|ref|ZP_06327464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus C427]
 gi|283958658|ref|ZP_06376104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|293507772|ref|ZP_06667614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510789|ref|ZP_06669491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus M809]
 gi|293539329|ref|ZP_06672008.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428479|ref|ZP_06821106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297590050|ref|ZP_06948690.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|81650792|sp|Q6GFG0|Y1988_STAAR RecName: Full=Uncharacterized RNA methyltransferase SAR1988
 gi|49242267|emb|CAG40974.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257271172|gb|EEV03329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274346|gb|EEV05858.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277961|gb|EEV08617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283723|gb|EEV13848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus M876]
 gi|282316370|gb|EFB46747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus C427]
 gi|282321409|gb|EFB51735.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324531|gb|EFB54843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282326785|gb|EFB57082.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330498|gb|EFB60015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595084|gb|EFC00051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus C160]
 gi|283789698|gb|EFC28520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|290919864|gb|EFD96933.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094835|gb|EFE25103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466420|gb|EFF08944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127461|gb|EFG57100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297577178|gb|EFH95892.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312437637|gb|ADQ76708.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315193426|gb|EFU23823.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 453

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + +   +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMGSCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT   +    +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMVIFVTNGKNWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPSTQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|331089004|ref|ZP_08337911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330406456|gb|EGG85969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 500

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/411 (21%), Positives = 149/411 (36%), Gaps = 54/411 (13%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51
            G  + +  YE+QL  K  ++R  +                  I    P +YR +A+F  
Sbjct: 99  GGCQIQEMSYEKQLEFKERKVRGNLERIGGFSSELLECTKEPIIGMETPFYYRNKAQFPF 158

Query: 52  WHDG-DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99
             D   +     +  +T + +     + G+ +           +    I          L
Sbjct: 159 GTDKEGNPVTGFYAGRTHDIIANTNCILGAAVNEHILESILDFMKKYKIRSYDEKTGTGL 218

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR----------KYQI 149
            R  L +  + T +     V           W      L + L               + 
Sbjct: 219 FRHVLLRYGFTTKEIMVCFVVNKDKADKSGEWFPHQKELVEELAKIDGMTSITASPNTKR 278

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
             +   +  ++   + Y+ + +     ++ Y+    SF Q N      +    L    G+
Sbjct: 279 TNVIMGDTFEVLWGQGYITDYIG----SVKYQISPLSFYQVNPVQTEKLYSQALE-YAGL 333

Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +GD  + +LYCG G  SL LA+   +V  VEI  P+++ AR N   N + N +     S+
Sbjct: 334 KGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENALLNGIENAQFFVGKSE 393

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325
           E      ++ E    +           I VDPPR G D   +  +       I+Y+SC+ 
Sbjct: 394 EILPKYYKDYE----EQHGGEKAHADVIVVDPPRKGCDAKLLDTILKMQPERIVYVSCDS 449

Query: 326 DSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +L RDL IL            + IE+    DQFP T H+E  VL+ +K S
Sbjct: 450 ATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETIVLIQKKNS 500


>gi|311067148|ref|YP_003972071.1| putative RNA methyltransferase [Bacillus atrophaeus 1942]
 gi|310867665|gb|ADP31140.1| putative RNA methyltransferase [Bacillus atrophaeus 1942]
          Length = 460

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 145/392 (36%), Gaps = 42/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K  +++ ++             +  +   +P +YR +A+  +   
Sbjct: 85  GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNKAQVPVGER 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAK 103
              L    + Q++ + + +   +      +  +  +               R +  LR  
Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICATYGVKAYNEERHKGWLRHI 204

Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           + +   +T +     +T      H+  + +        ++  +         +   N+T 
Sbjct: 205 MVRYGVVTGEMMIVFITRTKDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNVIFGNETN 264

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +    +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YC
Sbjct: 265 VIWGEEYIYDLIG----DVKFAISARSFYQVNPEQTKVLYDKALEYAELKGEETVIDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++        E  
Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                          T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L 
Sbjct: 379 ----------GITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLE 428

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              +    +   D FP+T H+E  V L  + S
Sbjct: 429 DGGYATLEVQPVDMFPHTNHVEVTVKLTLRGS 460


>gi|21283567|ref|NP_646655.1| hypothetical protein MW1838 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486716|ref|YP_043937.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297208925|ref|ZP_06925329.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300913018|ref|ZP_07130456.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|50401765|sp|Q8NVT4|Y1838_STAAW RecName: Full=Uncharacterized RNA methyltransferase MW1838
 gi|81649033|sp|Q6G836|Y1819_STAAS RecName: Full=Uncharacterized RNA methyltransferase SAS1819
 gi|21205008|dbj|BAB95703.1| MW1838 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245159|emb|CAG43625.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296886415|gb|EFH25344.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|300885796|gb|EFK81003.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|329731488|gb|EGG67851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 453

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|257876913|ref|ZP_05656566.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC20]
 gi|257811079|gb|EEV39899.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC20]
          Length = 474

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 153/388 (39%), Gaps = 46/388 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNL----QIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y++QLA K  ++  ++    ++P +     I   +P  YR +A+  +      L 
Sbjct: 106 LSHLSYDKQLAFKQQQVENVLAKIAKLPEIKVNAPIGMEKPFGYRNKAQIPVQKIHGKLT 165

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108
              + + +   + I+ F      I+  +I++   ++            E  LR  + +  
Sbjct: 166 TGFYRKNSHTLVPIEDFYIQDPNIDQAIIKVRDILQRFNVKAYNEEAHEGFLRHIVVRRG 225

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKIC 161
           +    S + +V L+  +       E A  + + +      IQ I             ++ 
Sbjct: 226 H---HSGEMMVVLVTRKPKFFKGEEIAEVIHEEIPEVVSVIQNINEEKTNVIMGEFERVL 282

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
             +  +D++L        ++    SF Q N      + +         + D +++ Y G 
Sbjct: 283 YGKSSIDDQLLGK----TFQISAKSFYQVNTAQTEVLYQTAFEMAHLSENDIVVDAYAGI 338

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + LA     VL +E+   +V  A+ N   N V NV      +++      RE    
Sbjct: 339 GTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQWLRE---- 394

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-ST 337
                     +   +FVDPPR GLD + +    A     I+YISCNP +L RDL++    
Sbjct: 395 --------GIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLARDLALFAEE 446

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +  + +   D FP T H+EC VLL R+
Sbjct: 447 GYVTKEVQPVDLFPQTTHVECVVLLERR 474


>gi|33355823|gb|AAQ16244.1| RNA methyl transferase-like [Enterococcus faecalis]
          Length = 571

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 154/385 (40%), Gaps = 41/385 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 103 YGAQLSFKTQQVENVMQRVAKLQEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 162

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 163 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 222

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 223 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 278

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 279 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 338

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 339 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 386

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 387 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 446

Query: 346 LFDQFPYTRHMECGVLLV-RKPSGW 369
             D FP T H+E  VLL  +KP G 
Sbjct: 447 PVDNFPQTTHIETVVLLSHKKPDGH 471


>gi|241889868|ref|ZP_04777166.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
 gi|241863490|gb|EER67874.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
          Length = 446

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 156/386 (40%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56
              L+   YE+QL  K  +++ +M      +       +   +  HYR ++   +     
Sbjct: 75  GANLVHMNYEEQLKFKKKKVQNVMDKALGKDYIEVLDTLGMEDGYHYRNKSVIPVQKVNG 134

Query: 57  DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105
           ++    +  ++ + + I+                  LI+ L + +         +R  +F
Sbjct: 135 EVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLSVYDENSHSGAIRHIMF 194

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKICL 162
           + + L S+    IV       LD+   + +    R+   +     +   +   +KT+   
Sbjct: 195 RTNTLKSEIMVGIVAKEKFNKLDEFVEKISKLDDRIVSIMLNINDKKTNVIFGDKTENLF 254

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            +DY+ + L      + ++    SF Q N      +    L   +  + D +++ YCG G
Sbjct: 255 GKDYITDTL----DGIDFKISLRSFYQVNPVQTEVLYSKALELAELKETDTIIDAYCGIG 310

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL  A+   +V  +EI + +V  A  N   N++ NV+ +   S++  + +        
Sbjct: 311 TISLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGKSEDVIKKLIS------ 364

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338
                    +   + VDPPR G +++ +  + A     I+Y+SCNP +L RD+ I+    
Sbjct: 365 ------QDVKLDAVIVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDMEIMRGLG 418

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +  +   D FP T H+E  VLL +
Sbjct: 419 YKLGSVQPVDMFPGTYHVETVVLLSK 444


>gi|302333562|gb|ADL23755.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 453

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 151/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYESQLEMKKEQVINLFQRKAQFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD+ +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDVLLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|260587415|ref|ZP_05853328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
           20583]
 gi|260542282|gb|EEX22851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
           20583]
          Length = 475

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 143/385 (37%), Gaps = 39/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
              L    YE+QL  K +++   +              I    P  YR +A+F +  D  
Sbjct: 98  GCQLQFLTYEKQLEFKKNKVVGNLERIGGFSDIPVEKVIGMENPWRYRNKAQFPVGKDKE 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
            +L    +  +T   +       G  +           +    +E    +  + L+R  L
Sbjct: 158 GNLITGFYAGRTHSIIPNTNCYLGVEVNEEILNAVLDYMRENHVEPYDEVTGKGLVRHIL 217

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKIC 161
            +  + T +    I+             E    +            +   +   N+    
Sbjct: 218 IRYGFKTKEIMVCIIINGRKIPNAAGLVEKLKDISGMTSITLNVNTKRNNVILGNEILPL 277

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             +DY+ + +      + Y+    SF Q N      +    L  A    +  + +LYCG 
Sbjct: 278 WGKDYITDYIG----EVKYQISPLSFYQVNPVQTEKLYGTALKYAGLTGKETVWDLYCGI 333

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   +V  VEI   ++E AR N   N + N +     ++E   A  +E    
Sbjct: 334 GTISLFLAQKAKKVYGVEIVPAAIEDARKNAEINGIENAEFFVGKAEEVLPAKYKED--- 390

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338
                         I VDPPR G D A +  + +     I+Y+SC+  +L RDL +L   
Sbjct: 391 --------GVYADVIVVDPPRKGCDGALIETMLSMKPERIVYVSCDSATLARDLKVLCEK 442

Query: 339 -HTIERLALFDQFPYTRHMECGVLL 362
            + +E++A+ D FP + H+E  VL+
Sbjct: 443 EYQVEKVAVCDMFPGSVHVETVVLM 467


>gi|291535466|emb|CBL08578.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis
           M50/1]
          Length = 565

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/398 (21%), Positives = 154/398 (38%), Gaps = 41/398 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQ-------IFRSEPIHYRMRAEFHIW 52
              +    YE+QL  K +++R  ++      P L        +   EP  YR +A+F I 
Sbjct: 79  GCQIQALDYEKQLEFKQNKVRGNLIRIGGFAPELIDRIMLPVVGMKEPYRYRNKAQFPIG 138

Query: 53  HDGD-DLYHIMFDQQTKERMRIDYFMPGSL----LINA-------LMIEMMATIRLEPLL 100
            D D +     +  +T   + ++    G      ++N          +        + L+
Sbjct: 139 ADKDGNPVAGFYAARTHSIIPVNDCKLGVEENQIILNEVLSYMKECHVASYDENTGKGLV 198

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANK 157
           R  L +  + T +    ++         +   +    +   +     +  +   +   + 
Sbjct: 199 RHVLIRYGFTTKELMVCVIINGNSLPKVEKLIDRLTAIEGMKSISINQNTKKTNVILGDV 258

Query: 158 TKICLDRDYVDERLTV--------AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKG 208
           TK      Y+ + + +            + Y     SF Q N      +    L  A   
Sbjct: 259 TKCIWGDPYITDMIHLRDTKDFSLTDTAVAYHISPQSFYQVNPVQTEKLYSLALDYAGLT 318

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  + +LYCG G  SL LA+   +V  VEI   ++E A+ N A N +NN +     ++E
Sbjct: 319 GKETVWDLYCGIGTISLFLAQKAGKVYGVEIVPQAIEDAKNNAALNGINNAEFFVGKAEE 378

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD 326
              A      + + KD D        I VDPPR G D   +  M++  P  I+Y+SC+  
Sbjct: 379 VLPAF-----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSA 433

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
           +L RDL +L    + + ++   DQF  T H+E  VLL 
Sbjct: 434 TLARDLKVLCEGGYELCKVRAVDQFGNTTHVETVVLLS 471


>gi|239825990|ref|YP_002948614.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70]
 gi|239806283|gb|ACS23348.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70]
          Length = 460

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 146/390 (37%), Gaps = 41/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL EK D + Q         ++       I   +P HYR +++F +   
Sbjct: 86  GCQLQHLDYQAQLREKRDIVIQAFERHCRLPIETLEIRPTIGMDDPWHYRNKSQFQVGTK 145

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAK 103
              +   ++   +   + I   +      N            L I +        L+R  
Sbjct: 146 KGAVIAGLYGLNSHRLIDIPECVIQHPATNRVTNIVKMILQDLRIPIYNERAQTGLVRTI 205

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++ + T      ++T        +   +    ++  L   K  +Q I    KT +   
Sbjct: 206 VARVGFHTGDVQLVLITTKKEIPRKELLID---EIKRRLPEVKSIVQNIN-GQKTSLIFG 261

Query: 164 RDY----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYC 218
            +      +E +      L +     +F Q N    V + + V  AA       +++ YC
Sbjct: 262 EESFLLEGEEYIQEVLGDLSFELSARAFFQLNPVQTVKLYDEVKKAAALTGTEKVVDAYC 321

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA+    +  ++    ++E A+ N   +   N   V   ++       +E  
Sbjct: 322 GVGTIGLWLAKDAGEIRGMDTIPEAIEDAKKNAKKHGFTNAMYVTGKAEALLPKWVKE-- 379

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                      ++   I VDPPR+G D   +  +       ++Y+SCNP SL RD+ +LS
Sbjct: 380 ----------GWKPDVIVVDPPRTGCDQQLLQTILRVKPKTVVYVSCNPSSLARDVDVLS 429

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             +T++ +   D FP+T H+EC   LV K 
Sbjct: 430 ERYTVDYIQPVDMFPHTAHVECVSRLVLKN 459


>gi|15924887|ref|NP_372421.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927471|ref|NP_375004.1| hypothetical protein SA1713 [Staphylococcus aureus subsp. aureus
           N315]
 gi|148268369|ref|YP_001247312.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
 gi|150394431|ref|YP_001317106.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
 gi|156980213|ref|YP_001442472.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253734995|ref|ZP_04869160.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255006684|ref|ZP_05145285.2| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257793749|ref|ZP_05642728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9781]
 gi|258408891|ref|ZP_05681173.1| RNA methyltransferase [Staphylococcus aureus A9763]
 gi|258421005|ref|ZP_05683936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9719]
 gi|258430023|ref|ZP_05688393.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|258443459|ref|ZP_05691801.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|258445317|ref|ZP_05693508.1| RNA methyltransferase [Staphylococcus aureus A6300]
 gi|258447881|ref|ZP_05696015.1| RNA methyltransferase [Staphylococcus aureus A6224]
 gi|258453314|ref|ZP_05701299.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A5937]
 gi|269203550|ref|YP_003282819.1| rRNA methyltransferase RumA [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894564|ref|ZP_06302792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8117]
 gi|282928070|ref|ZP_06335677.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A10102]
 gi|295407277|ref|ZP_06817076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8819]
 gi|296276906|ref|ZP_06859413.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246197|ref|ZP_06930048.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8796]
 gi|51316731|sp|Q7A4Q9|Y1713_STAAN RecName: Full=Uncharacterized RNA methyltransferase SA1713
 gi|51316908|sp|Q99SY9|Y1897_STAAM RecName: Full=Uncharacterized RNA methyltransferase SAV1897
 gi|13701690|dbj|BAB42983.1| SA1713 [Staphylococcus aureus subsp. aureus N315]
 gi|14247669|dbj|BAB58059.1| RNA methyltransferase homolog [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|147741438|gb|ABQ49736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946883|gb|ABR52819.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722348|dbj|BAF78765.1| RNA methyltransferase homolog [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253727177|gb|EES95906.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257787721|gb|EEV26061.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9781]
 gi|257840338|gb|EEV64800.1| RNA methyltransferase [Staphylococcus aureus A9763]
 gi|257842953|gb|EEV67371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9719]
 gi|257849617|gb|EEV73585.1| RNA methyltransferase [Staphylococcus aureus A9299]
 gi|257851344|gb|EEV75284.1| RNA methyltransferase [Staphylococcus aureus A8115]
 gi|257855835|gb|EEV78759.1| RNA methyltransferase [Staphylococcus aureus A6300]
 gi|257858813|gb|EEV81682.1| RNA methyltransferase [Staphylococcus aureus A6224]
 gi|257864522|gb|EEV87265.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A5937]
 gi|262075840|gb|ACY11813.1| rRNA methyltransferase RumA [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282590134|gb|EFB95215.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A10102]
 gi|282763051|gb|EFC03183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8117]
 gi|285817577|gb|ADC38064.1| RNA methyltransferase, TrmA family [Staphylococcus aureus 04-02981]
 gi|294967852|gb|EFG43882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8819]
 gi|297176904|gb|EFH36161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A8796]
 gi|312830269|emb|CBX35111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129294|gb|EFT85288.1| hypothetical protein CGSSa03_08530 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329724825|gb|EGG61329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 453

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   S+E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|294614134|ref|ZP_06694055.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636]
 gi|291592984|gb|EFF24572.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636]
          Length = 457

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 154/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +YEQQL  K  ++  +M              +  +EP  YR +A+  +      L 
Sbjct: 88  LAHLKYEQQLVFKQKQVEHVMAKIAKMPEVPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              + + + + + I+ F     +I+  +  +   ++            E  LR  + +  
Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQRFQVRGYNEEKNEGQLRHIIIRRG 207

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           +   +    +VT        + + +A  E    +   +     +   +   +K K+   R
Sbjct: 208 HYFHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGR 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY++++L        YR    SF Q N     ++ +  +   +  + D +++ Y G G  
Sbjct: 268 DYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTI 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA   D+V  +E+   ++E A++N   N + NV      +++  +  +         
Sbjct: 324 GLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVMKKWQE-------- 375

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD  + +   + 
Sbjct: 376 ----KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDTKLFAEAGYA 431

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E     V+
Sbjct: 432 VKKVQPVDLFPQTHHIELVASFVK 455


>gi|16077741|ref|NP_388555.1| RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308510|ref|ZP_03590357.1| hypothetical protein Bsubs1_03798 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312833|ref|ZP_03594638.1| hypothetical protein BsubsN3_03754 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317757|ref|ZP_03599051.1| hypothetical protein BsubsJ_03708 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322036|ref|ZP_03603330.1| hypothetical protein BsubsS_03794 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|50401309|sp|O31503|YEFA_BACSU RecName: Full=Uncharacterized RNA methyltransferase yefA
 gi|2632987|emb|CAB12493.1| putative RNA methyltransferase [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 459

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 145/390 (37%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K  +++ ++             +  +   +P +YR +A+  +   
Sbjct: 85  GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSKVTVHPTLGMEDPWNYRNKAQVPVGER 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              L    + Q++ + + +   +               +     ++     R +  LR  
Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICANYGVKAYNEERHKGWLRHI 204

Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           + +   +T +     +T      H+  + +        ++  +         +   N+T 
Sbjct: 205 MVRYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNVIFGNETN 264

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +    +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YC
Sbjct: 265 VIWGEEYIYDLIG----DVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEETVIDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++E A+ N   N   N +     ++        E  
Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEAETVIPKWYEE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                          T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L 
Sbjct: 379 ----------GITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLE 428

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365
              +    +   D FP+T H+EC VL+  K
Sbjct: 429 DGGYVTREVQPVDMFPHTNHVECCVLIKLK 458


>gi|28212064|ref|NP_783008.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
 gi|50401759|sp|Q891A0|Y2481_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_02481
 gi|28204507|gb|AAO36945.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
          Length = 460

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 151/382 (39%), Gaps = 33/382 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L    Y++QL  K  +++  +L     ++++        P  YR + +  I  +   
Sbjct: 85  GCQLQHMSYKEQLNFKRQKVKDALLRLGGIDVEVEEVLGMENPYRYRNKVQLPIGKEKGK 144

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYL 110
           +    +  ++   + +          + ++  +   I         E   +  L  I   
Sbjct: 145 VNIGFYAPRSHNIIDLKSCFIQDEKADKIIKILKEWIEKFNVSIYDEKEHKGNLRHIMVR 204

Query: 111 TS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165
           T+ ++ Q ++ L+          E   +L + L      IQ +  + KT + L ++    
Sbjct: 205 TAFRTGQIMIVLVTKDKKLPHKEELINKLTEDLEGVVSIIQNMN-SQKTNVVLGKESIVL 263

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           +  +++        +     SF Q N      +    L        +++ + YCG G  S
Sbjct: 264 WGKDKIIDYIGNFKFAITPLSFFQVNPIQTEVLYNKALEYADLKGDEVVFDAYCGTGTIS 323

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L L++   +V  VEI   ++E+A+ N   N+V+NV  +   S++             + +
Sbjct: 324 LFLSQKAKKVYGVEIVNEAIESAKLNARENNVDNVDFIVGESEQI------------IPE 371

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTI 341
           +     +   + VDPPR G + + +  +   A   I+Y+SC+P +L RDL +L    +  
Sbjct: 372 LIEKGIKADVVVVDPPRKGCEKSLLEAMAKMAPEKIVYVSCDPATLARDLGVLEELGYKT 431

Query: 342 ERLALFDQFPYTRHMECGVLLV 363
            ++   D F  T H+E  +L+ 
Sbjct: 432 MKVQPVDMFSNTYHVETIILMT 453


>gi|296451840|ref|ZP_06893559.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296879764|ref|ZP_06903738.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP07]
 gi|296259319|gb|EFH06195.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296429235|gb|EFH15108.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP07]
          Length = 452

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 152/388 (39%), Gaps = 41/388 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDG 55
            G  + D  Y +QL  K + ++Q++              I    P  YR +A+F I  + 
Sbjct: 80  GGCQIQDLDYNKQLEMKTNEVKQVLSRIGKLEDVEVHDTIGMDNPYRYRNKAQFPIQKNN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  + ++T + +  +  +    +           I A  + +        L+R  +
Sbjct: 140 GVPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTYIRAYKVSIYDEKTHTGLIRHLV 199

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +I + T +    +V            +E A  L++ +   K  +  + + + T   L +
Sbjct: 200 TKIGFTTKEVMVVLVANGNKLPY---LKELASVLKENIPGFKTLVVNVNQKD-TNAILGK 255

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           +    Y D ++      L++     SF Q N      + +  L  A       + ++YCG
Sbjct: 256 ENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYADLNETDTVFDIYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  +EI   +++ A+ N   N+++N +     ++E    M RE   
Sbjct: 316 IGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNMHNAEFYVGKAEEIVPKMYRE--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS- 336
                          + VDPPR G D+  +  +   +   I+Y+SCNP +L RDL  L+ 
Sbjct: 373 ---------GKTANVVVVDPPRKGCDEKVLETIVSMSPERIVYVSCNPSTLARDLDYLNV 423

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
                      D FP++ H+E    +++
Sbjct: 424 HGFKCVEAQPVDMFPHSTHVETVAKIIK 451


>gi|253729672|ref|ZP_04863837.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253726613|gb|EES95342.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 453

 Score =  286 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIQYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|289578813|ref|YP_003477440.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
           Ab9]
 gi|289528526|gb|ADD02878.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
           Ab9]
          Length = 453

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 144/387 (37%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
             +     YE QL  K  +++  +      +   +  I   EP  YR +A+F +     +
Sbjct: 82  GCSFQHLSYEGQLKYKTQKVKDNLERIGKVYTKVHEIIGMKEPQRYRNKAQFPVGMLDGE 141

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +    +  ++ +   I+  M  +             I    + +      + L+R  + +
Sbjct: 142 VVTGFYAPRSHDIAPIESCMIQNETSDNIARTVRNWIKKYNVSVYDEKAGKGLIRHIVTR 201

Query: 107 IDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           + + T +    +V    H      L DA ++    L+  +     +   +          
Sbjct: 202 VAFKTGEVMVILVVNGKHIPYKEQLIDALKKEIKGLKSVVLNINTKRTNVIMGEDNITIY 261

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
             D + + +    + + +     SF Q N      +   VL  A       ++++YCG G
Sbjct: 262 GSDNIIDYI----KDIKFEISPLSFFQVNPVQTEVLYGKVLEYADLKGNETVIDVYCGIG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL  A+    V  +E    +VE A+ N   N + NV+ +   +++             
Sbjct: 318 TISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISGQAEKV------------ 365

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
           + ++     +   + +DPPR G D   +  +       I+Y+SCNP +L RDL  L    
Sbjct: 366 MPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRYLDDKG 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +    +   D FPYT H+E   L+  K
Sbjct: 426 YKTMEVQPVDMFPYTHHVESVCLITNK 452


>gi|291521671|emb|CBK79964.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7]
          Length = 458

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 146/390 (37%), Gaps = 41/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIW-HDG 55
              +    YE+QLA K +++R ++              I    P +YR +A+F +     
Sbjct: 84  GCQIQHLSYERQLAFKENKVRNLLSRVGHIEDYVMHPIIGMEHPYYYRNKAQFPVGLGKD 143

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKL 104
             +    +   T   +   +    + +   L            I        + L+R  L
Sbjct: 144 GQIVTGFYAGHTHVIVDSAHCCIQAPVNEQLLVIVKKWMTDHDIAPYDETTHKGLVRHIL 203

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            ++ + T +    ++         ++  E    +   + +  + I      +   +K   
Sbjct: 204 TRVGFKTKEIMVCLIINGKKLPHSESLVEALREIPG-MTSISFNINQDKTNVILGSKVVT 262

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +DY+ + +      + Y+    SF Q N      +    L        D+  +LYCG
Sbjct: 263 LWGQDYITDYIG----DVRYQISPLSFYQVNPVQTEKLYGAALKFANPGPNDVIWDLYCG 318

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL +A+   +V  VEI   +++ A+ N A N ++N +     ++E           
Sbjct: 319 IGTISLFMAKKAKQVYGVEIVPQAIDDAKRNAAINDIHNAEFYVGKAEEVLPQTYER--- 375

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                          I VDPPR G D++ +  +       ++Y+SC+P +L RDL  L  
Sbjct: 376 --------EHIHADIIVVDPPRKGCDESLLACITQMQPKRVVYVSCDPATLARDLKYLEE 427

Query: 338 T-HTIERLALFDQFPYTRHMECGVLLVRKP 366
             + ++ +   D F ++ H+E  VLL RK 
Sbjct: 428 RDYKVKEVQCVDMFGHSVHVETVVLLQRKN 457


>gi|239638046|ref|ZP_04679005.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603]
 gi|239596329|gb|EEQ78867.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603]
          Length = 453

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 146/387 (37%), Gaps = 38/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQ--IFRSEPIHYRMRAEFHIW-HDG 55
              L    Y+ QL  K +++  +      F    ++  +   EP  YR +++  +     
Sbjct: 82  GCQLQHMSYQAQLNMKKEQVVNLFHRKSNFTNTVIKDTVGMEEPWRYRNKSQIPVGLSKN 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
                  + Q++ + + +D  +               LI+ L I +      + LLR  +
Sbjct: 142 QLPIMGFYRQRSHDIIDMDSCLIQDQQHQQVMNDVKQLISNLNISVYNEKTKKGLLRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  + T   +Q ++ L+ +       +     L           Q I  A+   I   +
Sbjct: 202 MRTGHYT---NQLMIILVTNGKAFKQAQVMVDALVRKYPNVTSIKQNINDAHSNVIMGHQ 258

Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               Y +E +      + +   + SF Q N+     + +  L   +    + +L+ YCG 
Sbjct: 259 SITLYGEEEIKDQLNEVTFNISDQSFYQINSHQTEKLYQQALDYAQLTGNEIVLDTYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L +A +   V  VE+   +++ A+ N   N   N   V   ++E     + E    
Sbjct: 319 GTIGLYMAENAKHVYGVEVVPSAIKDAKQNATINQFENTTFVCGKAEEVILEWKSE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                     R   + VDPPR G D+  +  +       I+YISCNP +  RD  ILS  
Sbjct: 375 --------GIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCNPSTQQRDAHILSRQ 426

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP T H+E   +  RK
Sbjct: 427 YELKEITPVDMFPQTTHIETVAIFERK 453


>gi|258422974|ref|ZP_05685873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9635]
 gi|257846761|gb|EEV70776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9635]
          Length = 453

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 151/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIW-HDG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +  ++ 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGENEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|253576638|ref|ZP_04853966.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844052|gb|EES72072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 483

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 142/386 (36%), Gaps = 46/386 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              +    YE QLA K + +R+    +           +    P  YR +A+  +    +
Sbjct: 110 GCQIQHLSYEGQLAGKEEIIREAFARYAGLQDVRLKPMLGMDHPWGYRNKAQLQLGMSQE 169

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105
            +   ++   + + + I         +N            L I +      + L+R  + 
Sbjct: 170 GMIAGLYAADSHKLIDITGCPIQHPKVNEVVDKTRDVLQRLGIPVYKEKSNQGLVRTIVV 229

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKT 158
           ++ + + Q    +VT        +   +    LR A+         +          N+T
Sbjct: 230 RVGFQSGQLQVTLVTANDKLPRRE---QLVKELRLAMPELTSIAMNVNPKNTSLVFGNRT 286

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELY 217
           +I    D + E L      L +     +F Q N    V + E V  AA    +  +++ Y
Sbjct: 287 EILWGADSIQESLG----DLEFTLSPRAFFQLNPLQTVKLYESVRAAAGLTGKETVVDAY 342

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L LA +   V  +E    +VE A+ N A N  +N +     ++E      +  
Sbjct: 343 CGTGTIGLWLAPYAKEVRGIESIPEAVEDAKANAARNGRDNAQFYTGYAEELLPRWVK-- 400

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-I 334
                       +    I  DPPR+GLD   +  V        +Y+SCNP +L +D   +
Sbjct: 401 ----------SGFAPDVIVADPPRTGLDPRFLEAVLKTKPKRFVYVSCNPSTLAKDCKAL 450

Query: 335 LSTTHTIERLALFDQFPYTRHMECGV 360
           L   + +E +   D FP T H+EC V
Sbjct: 451 LDGGYALEWVQPVDMFPQTSHVECVV 476


>gi|296331894|ref|ZP_06874359.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673506|ref|YP_003865178.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296150972|gb|EFG91856.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411750|gb|ADM36869.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 466

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 155/395 (39%), Gaps = 48/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQI----FRSEPIHYRMRAEFHIWH- 53
              L    Y QQL EK D + Q +     F++ N++I        P +YR +++F I   
Sbjct: 90  GCQLQHLAYSQQLREKRDIVIQSLERHTKFKIENMEIKETIGMDNPWNYRNKSQFQIGRS 149

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRA 102
               +   ++   + + + I   +      N              + +    + +  +R 
Sbjct: 150 QSGSIIAGLYGLDSHDIVPIKDCVVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRT 209

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RA 155
            + ++ +   ++ +  V L+  +       E    ++  L   K  IQ +          
Sbjct: 210 IVTRVGF---ETGEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQNVNGAKTSVIFG 266

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214
            KTK    +  + E L      + +     +F Q N    V + + V  AA    +  ++
Sbjct: 267 EKTKPLAGKTVIQEVLG----DVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKERVV 322

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G   + +A     V  +++ K S++ A+ N   + + N   V  +++ +     
Sbjct: 323 DAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMTNATYVTGTAEHWLPKWT 382

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
           +E             +R   + VDPPR+G D   +  +        +Y+SCNP +L +DL
Sbjct: 383 KE------------GFRPDVVIVDPPRTGCDSTFLDTIIKVKPKRFVYVSCNPSTLAKDL 430

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             LS  + ++ +   D FP T H+E    LV KPS
Sbjct: 431 QALSKDYRVDYIQPVDMFPQTAHVEAVAKLVLKPS 465


>gi|256847809|ref|ZP_05553254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715498|gb|EEU30474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 458

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 157/383 (40%), Gaps = 38/383 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +YE QL  K  ++++++    + N+++       +P HYR +A+  +      L  
Sbjct: 88  LGHLKYEAQLKFKQHQIQELLAKAHLDNIEVLPTLGMEKPYHYRNKAQVPVKMIRGQLET 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
             + + +   + I+ F      I+  ++ +   +R            + ++R  + +  Y
Sbjct: 148 GFYKRGSHTLVPIEDFYIQDPAIDQAIVVVRDLLRKYHVTPYNEQTGKGIIRTVMVRRGY 207

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---Y 166
            + +    +VT   H  +    ++    +   +   K  +Q I      ++  D+D   +
Sbjct: 208 YSHEVMVVLVTNTKHLPMK---QQIVDGIVAGVPEVKSIVQNINDRRTNRLLGDQDVTLW 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225
             + +      + +     SF Q N      + +  +  A       +++ YCG G  SL
Sbjct: 265 GADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQAAIDNAELDGSQTVIDAYCGIGTISL 324

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+H  +V  VEI   ++  A+ N   N + N + V   ++E     + E         
Sbjct: 325 AVAKHAKQVYGVEIVPAAIADAKKNAQNNEITNAEFVVGKAEEQFAKWQAE--------- 375

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                +   + VDPPR GL ++ +      A   ++Y+SCNP +L RD+   +   + + 
Sbjct: 376 ---GLKPDVVIVDPPRKGLAESLIEATGKMAPKKVIYVSCNPATLVRDIQRFAEQGYHVT 432

Query: 343 R-LALFDQFPYTRHMECGVLLVR 364
           + +   DQFP T H+E   +L R
Sbjct: 433 KPIQPVDQFPQTTHVESVTVLER 455


>gi|82751550|ref|YP_417291.1| RNA methyltransferase [Staphylococcus aureus RF122]
 gi|82657081|emb|CAI81518.1| RNA methyltransferase [Staphylococcus aureus RF122]
          Length = 453

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYESQLEMKKEQVINLFQRKAQFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWSQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQKNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|194466906|ref|ZP_03072893.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
 gi|194453942|gb|EDX42839.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
          Length = 456

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 154/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +YE QL  K  ++ +++    +  +++       +P HYR +A+  +      L  
Sbjct: 88  LGHLKYEAQLKFKQHQIAELLAKAHLDEIEVLPTTGMKKPYHYRNKAQVPVKMVRGQLET 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
             + + +   + I+ F      I+  ++ +   +R            + ++R  + +  Y
Sbjct: 148 GFYKRGSHNLVPIEDFYIQDPEIDKAIVVVRDLLRQYHITPYDEQTGKGVIRTVMVRRGY 207

Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
            + +    +VT    L   + + D        ++  +     +       +K K     D
Sbjct: 208 YSHEMMVVLVTNTKRLPMEKQIVDGIVAGVPEVKSIVQNINDKRTNRLLGDKNKTLWGAD 267

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
            + ++L      + +     SF Q N      + +  +  A       +++ YCG G  S
Sbjct: 268 EIHDQLL----GIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGNQTVIDAYCGIGTIS 323

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L +A+H  +V  VEI   ++E A++N   N + N K V   ++E     + E        
Sbjct: 324 LAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAEEQFAKWQAE-------- 375

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHTI 341
                 +   + VDPPR GL ++ +          ++Y+SCNP +L RD+   +   + +
Sbjct: 376 ----GLKPDVVIVDPPRKGLAESLIEATGKMDPKKVIYVSCNPATLVRDIKRFADQGYHV 431

Query: 342 ER-LALFDQFPYTRHMECGVLLVR 364
            + +   DQFP T H+E   +L R
Sbjct: 432 TKPIQPVDQFPQTTHVESVTVLER 455


>gi|56962873|ref|YP_174600.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
 gi|56909112|dbj|BAD63639.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
          Length = 458

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 134/383 (34%), Gaps = 34/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              +    Y  QLA K  +++ +M              I   +P  YR +++  +     
Sbjct: 86  GCQIQHMDYSAQLAYKQKQVKDVMGRVAKLPDVPVPPVIGMDDPWRYRNKSQVPVAFQKG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQIDY 109
           DL    + +++   + +D  +            +  L  E+      E   +  L  I  
Sbjct: 146 DLVAGFYAKRSHSIVDMDQCIIQHKENDIVVQTVKQLAKELRIPAYQEQSHQGVLRHIVA 205

Query: 110 LTSQS-DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165
              ++  Q +V L+               +R  +      +Q I     T +   +    
Sbjct: 206 RYGKTTGQVMVVLVTKEKKLPHKEAFISGIRKHVPGVVSIVQNINNKR-TNVIFGQQTDV 264

Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            + +  L     ++ +     SF Q N      +    L        + +++ YCG G  
Sbjct: 265 LWGEHYLYDEINSIRFAISARSFYQVNPEQTNRLYSKALEYADLTGNEIVIDAYCGIGTI 324

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA+    V  VEI   +++ A+ N   N + N       ++E               
Sbjct: 325 SLFLAKKARHVYGVEIVPEAIKDAKRNAKLNQITNATFAVGEAEEVIPRWHD-------- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHT 340
                      I VDPPR G D+A +  +       I+Y+SCNP +L RDL IL    + 
Sbjct: 377 ----QGIDADVIVVDPPRKGCDEALLRTMMEMKPKRIVYVSCNPGTLARDLRILEDGGYK 432

Query: 341 IERLALFDQFPYTRHMECGVLLV 363
            E +   D FP T H+E    LV
Sbjct: 433 TEEVTPVDMFPQTTHVEAVARLV 455


>gi|253316906|ref|ZP_04840119.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 453

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   S+E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKSDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|302672182|ref|YP_003832142.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302396655|gb|ADL35560.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 496

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 155/418 (37%), Gaps = 56/418 (13%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQ---MMLAFQ------VPNLQIFRSEPIHYRMRAEFHI 51
            G       YE++L  K  ++R     +  F       +    I   EP  YR +A+F I
Sbjct: 80  GGCQTQNMSYEKELEFKQRKVRNNIVRLGGFDESFVDSIMEPIIGMDEPWRYRNKAQFPI 139

Query: 52  WHDG-DDLYHIMFDQQTKERMRIDYFMPG--------SLLINAL---MIEMMATIRLEPL 99
             D    +    +  +T   + +   + G        S++I+ +    IE       + L
Sbjct: 140 GKDKNGRIIAGFYAGRTHSIIPVTDCLIGTAENKDILSVIISHMEKNNIEPYDETSGKGL 199

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDD--------------AWRECAIRLRDALHAR 145
           +R  L +  + + Q    +V        +                +      L   L   
Sbjct: 200 MRHVLIRKGFTSGQIMVCLVLNYKGISKNKKFAGINADGENTAIEYISGQKELVTRLSQI 259

Query: 146 K--YQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
           K    I +    +KT + +  +    + ++ ++     L +     SF Q N      + 
Sbjct: 260 KGMTSISVSINTDKTNVIMGTEIHTIWGNDTISDTLCGLEFDISPLSFYQVNPVQCEKLY 319

Query: 200 EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +    G+ G+  + +LYCG G  +L +A+    V  VEI   ++E A+ N   N + 
Sbjct: 320 GQAIE-YAGLTGEETVWDLYCGIGTITLSMAKKAGHVYGVEIIPDAIEDAKKNALRNGLT 378

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIH--------SYRFKTIFVDPPRSGLDDATV 309
           N       ++E                  +         +     I VDPPR G D A +
Sbjct: 379 NADFFCGKAEEVLPDFYANGRLEEKDKHALQSEYNISESALHPDVIVVDPPRKGCDQACL 438

Query: 310 G-MVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
             M++  P  I+Y+SC+  +L RDL IL+   + ++ +   D F +T H+E  VLL +
Sbjct: 439 DTMLKMSPDRIVYVSCDSATLARDLRILADGGYELKAIRPCDMFGHTVHVETVVLLTK 496


>gi|154685168|ref|YP_001420329.1| YefA [Bacillus amyloliquefaciens FZB42]
 gi|154351019|gb|ABS73098.1| YefA [Bacillus amyloliquefaciens FZB42]
          Length = 464

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 146/391 (37%), Gaps = 42/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K  +++ ++           + +  +   +P +YR +A+  +   
Sbjct: 85  GCQLQHMTYEGQLLFKQKQVKDVLERIGKLNLSKVIVHPTLGMEDPWNYRNKAQVPVGER 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAK 103
              L    + Q++ + + +   +      +  +  +               R +  LR  
Sbjct: 145 EGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICTSYGVKAYNEERHKGWLRHI 204

Query: 104 LFQIDYLTSQSDQAIVTL---IYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           + +   +T +     +T      H+  + +        ++  +         +   N+T 
Sbjct: 205 MVRYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQFPHVKSIVQNINPNKTNVIFGNETN 264

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +    +Y+ + +      + +     SF Q N      + +  L  A    +  +++ YC
Sbjct: 265 VIWGEEYIYDLIG----DVKFAISARSFYQVNPEQTKVLYDKALEYAELQGEETVIDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++E A+ N   N + N +     ++       +E  
Sbjct: 321 GIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYKE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                          T+ VDPPR G D+A +  +       ++Y+SCNP +L RDL +L 
Sbjct: 379 ----------GITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTLARDLRMLE 428

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
              +    +   D FP+T H+E    ++ K 
Sbjct: 429 DGGYQTLEVQPVDMFPHTNHVEVVSQMILKN 459


>gi|240146924|ref|ZP_04745525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
 gi|257200907|gb|EEU99191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
          Length = 565

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/398 (21%), Positives = 154/398 (38%), Gaps = 41/398 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQ-------IFRSEPIHYRMRAEFHIW 52
              +    YE+QL  K +++R  ++      P L        +   EP  YR +A+F I 
Sbjct: 79  GCQIQALDYEKQLEFKQNKVRGNLIRIGGFAPELIDRIMLPVVGMKEPYRYRNKAQFPIG 138

Query: 53  HDGD-DLYHIMFDQQTKERMRIDYFMPGSL----LINA-------LMIEMMATIRLEPLL 100
            D D +     +  +T   + ++    G      ++N          +        + L+
Sbjct: 139 ADKDGNPVAGFYAARTHSIIPVNDCKLGVEENQIILNEVLSYMKEYHVASYDENTGKGLV 198

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANK 157
           R  L +  + T +    ++         +   +    +   +     +  +   +   + 
Sbjct: 199 RHVLIRYGFSTKELMVCVIINGSSLPKVEKLIDRLTAIEGMKSISINQNTKKTNVILGDV 258

Query: 158 TKICLDRDYVDERLTVAGR--------TLIYRQIENSFTQPNAGINVHMLEWVLA-ATKG 208
           TK      Y+ + + +            + Y     SF Q N      +    L  A   
Sbjct: 259 TKCIWGDPYITDMIHLCDTKDFSLTDTAVAYHISPQSFYQVNPVQTEKLYSLALDYAGLT 318

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  + +LYCG G  SL LA+   +V  VEI   ++E A+ N A N +NN +     ++E
Sbjct: 319 GKETVWDLYCGIGTISLFLAQKAGKVYGVEIIPQAIEDAKNNAALNGINNAEFFVGKAEE 378

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD 326
              A      + + KD D        I VDPPR G D   +  M++  P  I+Y+SC+  
Sbjct: 379 VLPAF-----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSA 433

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
           +L RDL +L    + + ++   DQF  T H+E  VLL 
Sbjct: 434 TLARDLKVLCEGGYELCKVRAVDQFGNTTHVETVVLLS 471


>gi|315641084|ref|ZP_07896163.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
           15952]
 gi|315483092|gb|EFU73609.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
           15952]
          Length = 465

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 152/384 (39%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    YE+QL+ K +++  ++           +  I   +P HYR +A+  +      L 
Sbjct: 95  LSHLTYEKQLSFKQEQVTNVLKKIAHMPDVTVSPTIAMEQPSHYRNKAQIPVQKINGQLT 154

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108
              + + +   + ++ F      I+  + E+   ++            E  LR  + +  
Sbjct: 155 TGFYRKHSHTLIPLEDFYIQDPAIDEAISEIRDILQRFGVKAYNEEAHEGFLRHIIIRRG 214

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT          + +  +E    +   +     +   +      ++   +
Sbjct: 215 HYSHQMMVILVTRKPKFFQADKIAEVIKEMLPEVVSIIQNVNEEKTNVIMGPTNRVLYGK 274

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y++++L        +R    SF Q N      + +  +   +  + D +++ Y G G  
Sbjct: 275 SYIEDQLLGK----TFRISAQSFYQVNTEQAEKLYQVAMDFAQLSKNDTVVDAYSGIGTI 330

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA   D V  +EI   +V+ A+ N A N + N   +   +++      RE       
Sbjct: 331 GLSLADKVDHVYGMEIVAEAVKDAQTNAAINGITNATYLEGKAEKIMHQWAREE------ 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHT 340
                  +   +FVDPPR GLD + +          ++YISCNP ++ RD+ +     + 
Sbjct: 385 ------VQPTVVFVDPPRKGLDASFIDATCEMQPERVVYISCNPATMARDVKLFAEKGYQ 438

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +E++   D FP T H+EC  LL R
Sbjct: 439 LEKVQPVDLFPQTVHVECVGLLTR 462


>gi|298695236|gb|ADI98458.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
          Length = 453

 Score =  285 bits (730), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWSQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|311029127|ref|ZP_07707217.1| putative RNA methyltransferase [Bacillus sp. m3-13]
          Length = 469

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 157/387 (40%), Gaps = 41/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L   +Y+QQL  K D + Q +      N         I   +P +YR +++F +   
Sbjct: 95  GCQLQHLKYDQQLTLKRDIVIQSLERHTKLNVSKLDIKPTIGMEDPWYYRNKSQFQVGKQ 154

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
            + +   ++   + + + ID  +               ++    I +    + +P +R  
Sbjct: 155 KEKVIAGLYGANSHKLIDIDNCIVQHSATTEVTNTVKKILQDFNIPVQNEKKGQPSVRTI 214

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++ + T +    ++T           +     ++ +L   K  +Q +    KT +   
Sbjct: 215 MTRVGFSTGEIQVVLITTDEKLPRK---QLVVEEIQKSLPKVKSIMQNVN-GKKTSLIFG 270

Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYC 218
            + +    ++ +      + +     +F Q N    V + + V  AA    +  +++ YC
Sbjct: 271 EETIHLSGEKVIQETLGDVSFELSARAFFQLNPVQTVKLYDLVKEAAQLTGKEKVVDAYC 330

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  ++    S++ A+ N   +   N+K V   ++++     +E  
Sbjct: 331 GVGTIGLWLAEGAGEVRGMDTIAESIDDAKENAKRHGYTNMKYVAGKAEKWLPRWVKE-- 388

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                      +R  TI VDPPR+GLD+  +  V      + +Y+SCNP +L +D+  LS
Sbjct: 389 ----------GWRPDTIVVDPPRTGLDETFMKTVLDVEPKNFVYVSCNPSTLAKDIQFLS 438

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLV 363
             + ++ +   D FP T H+EC  LL 
Sbjct: 439 KKYKVDWIQPVDMFPQTAHVECCALLT 465


>gi|332974302|gb|EGK11234.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437]
          Length = 465

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 144/385 (37%), Gaps = 34/385 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K  ++                  +   EP  YR +A+  +     
Sbjct: 86  GCQLQHIAYPAQLESKRRQVVDAFARIGGLEEVTILPVLGMEEPWSYRNKAQVPVGGGKG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109
            +    +   + + +  D  +      +  + ++   I         E   R  L  +  
Sbjct: 146 KVEAGFYAAGSHQIIPFDRCLIQQPENDRTIQQVKEWIRELDIPPYDEKKHRGCLRHVMV 205

Query: 110 LTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165
            T   + + +V L+ +       ++    LR+ +      IQ I   ++T + L ++   
Sbjct: 206 RTGIHTQEVMVVLVTNGPELPHRKQLVASLRERVPGLTSLIQNIQP-HRTNVVLGKESRV 264

Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
            + +  +      + +    +SF Q N      + E V         +++ + YCG G  
Sbjct: 265 LWGEPVIHDRIGHVRFAISPHSFFQVNPVQTEVLYEQVRRMAALTGEEIIIDAYCGIGTI 324

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA+   RVL VE    +VE AR+N   N +++       ++E      RE       
Sbjct: 325 GLYLAKEAARVLGVESIPQAVEDARHNAELNGIDHASFEAGPAEEVMPRWARE------- 377

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  R   + VDPPR G     +   V+  P  ++Y+SCNP +L RD + L    +T
Sbjct: 378 -----GIRPDVMIVDPPRKGCAPELLDAAVRMSPDRLVYVSCNPATLARDAAYLKERGYT 432

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
             ++   D FP+T H+EC  +  R+
Sbjct: 433 NCQVQPVDMFPHTSHVECVTVFRRE 457


>gi|330685548|gb|EGG97194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis VCU121]
          Length = 453

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 145/387 (37%), Gaps = 38/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQ--IFRSEPIHYRMRAEFHIW-HDG 55
              L    Y+ QL  K +++  +      F    ++  +   +P  YR +++  +     
Sbjct: 82  GCQLQHMSYQAQLNMKKEQVVNLFHRKAKFTNTVIKDTVGMEDPWRYRNKSQIPVGLSKD 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
                  + Q++ + + ++  +               LI+ L I +      + LLR  +
Sbjct: 142 QQPIMGFYRQRSHDIIDMESCLIQDQQHQQVMNDLKQLISELNISVYNEKTKKGLLRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  + T   +Q ++ L+ +             L           Q I  A+   I   +
Sbjct: 202 VRTGHYT---NQLMIILVTNGKAFKQAESLVDALVRKYPNVTSIKQNINDAHSNVIMGPQ 258

Query: 165 D---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               Y +E +      + +   + SF Q N+     + +  L   +    + +L+ YCG 
Sbjct: 259 SITLYGEEEIEDQLSEVTFNISDQSFYQINSHQTEKLYQQALDYAQLTGDEIVLDTYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  ++ +A +   V  VE+   ++  A  N   N + N   V   ++E     + E    
Sbjct: 319 GTIAIYMAENARHVYGVEVVPSAINDANQNATKNQLENTTFVCGKAEEVILKWKAE---- 374

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                     R   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+  
Sbjct: 375 --------GIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCNPSTQQRDAHILNHQ 426

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP T H+E   L  RK
Sbjct: 427 YDLKEITPVDMFPQTTHIETVALFERK 453


>gi|57652118|ref|YP_186782.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
 gi|87160330|ref|YP_494530.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195795|ref|YP_500605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|151222047|ref|YP_001332869.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161510119|ref|YP_001575778.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141187|ref|ZP_03565680.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|258451037|ref|ZP_05699073.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
           A5948]
 gi|262049941|ref|ZP_06022801.1| hypothetical protein SAD30_1411 [Staphylococcus aureus D30]
 gi|262053191|ref|ZP_06025349.1| hypothetical protein SA930_1196 [Staphylococcus aureus 930918-3]
 gi|282923236|ref|ZP_06330917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9765]
 gi|284024943|ref|ZP_06379341.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
 gi|294849446|ref|ZP_06790188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9754]
 gi|304379083|ref|ZP_07361830.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|81694159|sp|Q5HEM5|Y1957_STAAC RecName: Full=Uncharacterized RNA methyltransferase SACOL1957
 gi|57286304|gb|AAW38398.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126304|gb|ABD20818.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203353|gb|ABD31163.1| RNA methyltransferase, TrmA family, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150374847|dbj|BAF68107.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|160368928|gb|ABX29899.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257861279|gb|EEV84091.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
           A5948]
 gi|259158918|gb|EEW44004.1| hypothetical protein SA930_1196 [Staphylococcus aureus 930918-3]
 gi|259161949|gb|EEW46531.1| hypothetical protein SAD30_1411 [Staphylococcus aureus D30]
 gi|282593147|gb|EFB98146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9765]
 gi|294823583|gb|EFG40010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           A9754]
 gi|302751769|gb|ADL65946.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304342318|gb|EFM08210.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|315196232|gb|EFU26587.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320139723|gb|EFW31592.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142360|gb|EFW34174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314573|gb|AEB88986.1| Uncharacterized RNA methyltransferase [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728677|gb|EGG65107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 453

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 149/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|227515533|ref|ZP_03945582.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           fermentum ATCC 14931]
 gi|227086146|gb|EEI21458.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           fermentum ATCC 14931]
          Length = 458

 Score =  285 bits (729), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 148/378 (39%), Gaps = 39/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QL  K  ++++++    + NL++       +P  YR +A+  +           + +
Sbjct: 94  YPAQLKFKQRQIQELLEKAHL-NLEVAETLGMDQPFGYRNKAQVPVRMVKGQPTTGFYKR 152

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114
            + + + I+ F      I+  ++ +   +R              ++R  + +  Y + Q 
Sbjct: 153 GSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVPAYDEETHRGVIRTVMVRRGYYSHQV 212

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DERL 171
              +VT   H        E    + + +   K  +Q +       I   ++++   +  +
Sbjct: 213 MVVLVTNGEH---FPHVAEITREISERVPGIKSIVQNVNDKRTNVILGTKNHLLWGEPTI 269

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230
                 + +     SF Q N      + +  +  A       +++ YCG G  SL +A+H
Sbjct: 270 HDTLLGIDFTISPLSFYQVNPQQTERLYQTAIENAGLDGSKTVIDAYCGIGTISLAVAKH 329

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V  VEI   ++  A+ N A N + N   V   ++E     + E              
Sbjct: 330 AKHVYGVEIVPAAIADAKQNAANNGIENATFVVGKAEEQFAKWQAE------------GL 377

Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIER-LAL 346
           +   + VDPPR GLD   +      A   ++Y+SCNP +L RDL   +   + + + +  
Sbjct: 378 KPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDLQRFAEQGYHVTKPIQP 437

Query: 347 FDQFPYTRHMECGVLLVR 364
            DQFP T H+E   +L R
Sbjct: 438 VDQFPQTTHVESVTVLER 455


>gi|227498264|ref|ZP_03928414.1| RNA methyltransferase [Acidaminococcus sp. D21]
 gi|226903726|gb|EEH89644.1| RNA methyltransferase [Acidaminococcus sp. D21]
          Length = 460

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 147/388 (37%), Gaps = 41/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHI-WHDG 55
              +    YE QL +K   +   +           N  +   +P HYR + +  +     
Sbjct: 86  GCQIQHLAYEAQLVQKRQTVIDALERIGHFSGINVNPTLGADDPWHYRNKMQVPVAEGKK 145

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104
             L    F Q T   + +   +      N L   + A +               ++R  +
Sbjct: 146 HSLSIGCFAQGTHHVIDVKRCLIQHDANNELTAVVRAWMERYHIPALKEDARTGIVRHIM 205

Query: 105 FQIDYLTSQSDQAIVTLI----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            ++   T +    +VT      + + L    +E        +     +   +      K+
Sbjct: 206 GRVGVQTGEVMAVLVTNTDRVPHLKELTHMLKEAIPGFVTLVQNVNTRHTNVIMGPHNKV 265

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
                 + +RL      L +    +SF Q N      + E  L+ A    + ++++LYCG
Sbjct: 266 IYGPGVIHDRLG----DLTFVISPHSFFQVNTLQAQRLYETALSYAALEGKENVIDLYCG 321

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L LA+     L +EI  P++  AR N   NH+ N + +   + +    + R+   
Sbjct: 322 TGTITLFLAQKARHALGIEIVAPAIADARKNARDNHIKNSEFICADAAKELPLLVRD--- 378

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      R   + +DPPR+G +   +  + A     ++Y+SC P SL RD +IL  
Sbjct: 379 ---------GIRPDVVVLDPPRAGCERPVLDAILAVRPKRVVYVSCGPASLARDAAILCE 429

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364
             + I ++   D FP+T H+E  VL+ R
Sbjct: 430 GGYNIRQVQPVDMFPHTSHVETVVLMSR 457


>gi|163789372|ref|ZP_02183811.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7]
 gi|159875226|gb|EDP69291.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7]
          Length = 458

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 151/384 (39%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGDDLY 59
           L   +Y  QL  K  ++   M    ++P + ++     + P  YR +A+  +    D L 
Sbjct: 90  LQHMRYPAQLNFKKQQVMNSMQRIAKLPEVPVYDTIGMANPSGYRNKAQIPVRKINDKLT 149

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQID 108
              F + + E + ++ F      I+  +I +   +R   +           LR  + +  
Sbjct: 150 TGFFRKNSHEVIPMENFYIQDPKIDETIIAVRDIMREYGVKPYNENENTGNLRHIIVRRG 209

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           Y T +    +VT    L     +     E    +   +     +   +   +   +    
Sbjct: 210 YYTGEIMIVLVTRTAKLFPTSKIIPDIIEAIPEVVSIVQNVNPKHTNVIMGDDAIVLYGE 269

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223
           D   + L        +     SF Q N      + + VL  A    +  +++ Y G G  
Sbjct: 270 DKYKDTLLGN----TFEISHRSFYQVNPQQTEKLYQTVLDFAELTGEETVIDAYSGIGTI 325

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L LA++   V  +EI +P+V  A+ N   N++ NV     +++E       E       
Sbjct: 326 ALTLAKNAKHVYGIEIIEPAVVNAKANAELNNIENVTFEAGAAEEVMVQWSEE------- 378

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHT 340
                      + VDPPR GL+      V A     ++Y+SCNP +L RDL++L    +T
Sbjct: 379 -----GRTADLLVVDPPRKGLEKEFTEAVIAMKPTKMVYVSCNPATLARDLALLTEGGYT 433

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E   LLVR
Sbjct: 434 VKKVQPVDLFPQTTHVESVALLVR 457


>gi|293385052|ref|ZP_06630886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|293389323|ref|ZP_06633784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|312906041|ref|ZP_07765054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|312909387|ref|ZP_07768243.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
 gi|291077730|gb|EFE15094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           R712]
 gi|291081345|gb|EFE18308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           S613]
 gi|310628036|gb|EFQ11319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 512]
 gi|311290411|gb|EFQ68967.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           DAPTO 516]
          Length = 504

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLARDIALLTEGGYEAKEIQ 482

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 483 PVDNFPQTTHIESVTLLTK 501


>gi|160879797|ref|YP_001558765.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160428463|gb|ABX42026.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
           ISDg]
          Length = 554

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 151/387 (39%), Gaps = 43/387 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLY 59
            G   +D  YE+QL  K  ++ +++  F   +  +    P HYR + +     D   ++ 
Sbjct: 185 GGCHYLDLPYEEQLKIKQKQVSKLLSDFCKVHPILGMEHPYHYRNKVQAVFGRDAKGNII 244

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQID 108
             ++ + T + +     +      + +            I+         LLR  L +  
Sbjct: 245 SGVYKEGTHQIIPTTSCLIEDKKADEIIGTIRGMLKSFKIKTYDEDSGYGLLRYVLVKRG 304

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161
           +    S + +V L+    +  + +     LR A       +  I          ++  + 
Sbjct: 305 F---TSGEIMVVLVIASPILPSKKNFVAALRKAHPEITTIVLNINNRTDSLILGDRETVL 361

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220
             + Y+++ L       ++R    SF Q N      + +  + AA    +  +++ YCG 
Sbjct: 362 YGKGYIEDTLCGN----VFRISSKSFYQVNPVQTERLYQLAIKAAGLTGKERVIDAYCGI 417

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   LV +++   VL VE+ K +++ A  N   N + N       + EF  AM       
Sbjct: 418 GTIGLVASKNAKEVLGVEVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAMAE----- 472

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-ST 337
                     +   + +DPPR+G  +  +  V++     ++YISCNP +L RDL      
Sbjct: 473 -------KGEKADVVIMDPPRAGSTEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKK 525

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + ++     D FP+T H+E   LL +
Sbjct: 526 GYQVKEAWPVDMFPWTGHVETVCLLYK 552


>gi|325570600|ref|ZP_08146326.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156446|gb|EGC68626.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 465

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 153/387 (39%), Gaps = 46/387 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNL----QIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y++QLA K  ++  ++    ++P +     I   +P  YR +A+  +     +L 
Sbjct: 97  LSHLSYDKQLAFKQQQVENVLAKIAKLPEITVNAPIGMEKPFGYRNKAQIPVQKIHGELT 156

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108
              + + +   + I+ F      I+  +I++   ++            E  LR  + +  
Sbjct: 157 TGFYRKNSHTLVPIEDFYIQDPNIDQAIIKVRDILQRFNVKAYNEEAHEGFLRHIVVRRG 216

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKIC 161
           +    S + +V L+  +       E A  + + +      IQ I             ++ 
Sbjct: 217 H---HSGEMMVVLVTRKPKFFKGEEIAEVIHEEIPEVVSVIQNINEEKTNVIMGEFERVL 273

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220
             +  +D++L        ++    SF Q N      + +         + D++ + Y G 
Sbjct: 274 YGKSSIDDQLLGK----TFQISAKSFYQVNTAQTEVLYQTAFKMAHLSENDVVVDAYAGI 329

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + LA     VL +E+   +V  A+ N   N V NV      +++      RE    
Sbjct: 330 GTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQWLRE---- 385

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-ST 337
                     +   +FVDPPR GLD + +    A     I+YISCNP +L RDL++    
Sbjct: 386 --------GIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLARDLALFAEE 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  + +   D FP T H+EC VLL R
Sbjct: 438 GYVTKEVQPVDLFPQTTHVECVVLLER 464


>gi|291537891|emb|CBL11002.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 475

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 154/398 (38%), Gaps = 41/398 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQ-------IFRSEPIHYRMRAEFHIW 52
              +    YE+QL  K +++R  ++      P L        +   EP  YR +A+F I 
Sbjct: 79  GCQIQALDYEKQLEFKQNKVRGNLIRIGGFAPELIDRIMLPVVGMKEPYRYRNKAQFPIG 138

Query: 53  HDGD-DLYHIMFDQQTKERMRIDYFMPGSL----LINA-------LMIEMMATIRLEPLL 100
            D D +     +  +T   + ++    G      ++N          +        + L+
Sbjct: 139 ADKDGNPVAGFYAARTHSIIPVNDCKLGVEENQIILNEVLSYMKEYHVASYDENTGKGLV 198

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANK 157
           R  L +  + T +    ++         +   +    +   +     +  +   +   + 
Sbjct: 199 RHVLIRYGFSTKELMVCVIINGNSLPKVEKLIDRLTAIEGMKSISINQNTKKTNVILGDV 258

Query: 158 TKICLDRDYVDERLTV--------AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKG 208
           TK      Y+ + + +            + Y     SF Q N      +    L  A   
Sbjct: 259 TKCIWGDPYITDMIHLRDTKDFSLTDTAVAYHISPQSFYQVNPVQTEKLYSLALDYAGLT 318

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  + +LYCG G  SL LA+   +V  VEI   ++E A+ N A N +NN +     ++E
Sbjct: 319 GKETVWDLYCGIGTISLFLAQKAGKVYGVEIVPQAIEDAKNNAALNGINNAEFFVGKAEE 378

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD 326
              A      + + KD D        I VDPPR G D   +  M++  P  I+Y+SC+  
Sbjct: 379 VLPAF-----YEKKKDTDADMLHPDVIVVDPPRKGCDGVCLETMLKMQPERIVYVSCDSA 433

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
           +L RDL +L    + + ++   DQF  T H+E  VL+ 
Sbjct: 434 TLARDLKVLCEGGYELCKVRAVDQFGNTTHVESVVLMQ 471


>gi|150019658|ref|YP_001311912.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
 gi|149906123|gb|ABR36956.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB
           8052]
          Length = 459

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 151/392 (38%), Gaps = 45/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             TL+   Y+ QL  K +R++  +         +    I    P  YR +  + I    +
Sbjct: 80  GCTLMHSNYDSQLKFKYNRVKDCIERIGGLSGDIVKNTIGMEFPYRYRNKGIYSIALTDN 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTS- 112
           +L    F ++T E + +D  +        I  ++   M    + P  +  LF  + L   
Sbjct: 140 ELSMGFFSEKTHEVVDMDKCLIQDEETDKIIKIIRNWMKKYSILPARKDNLFFSEGLIRN 199

Query: 113 -------QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKT 158
                  ++++ +V LI          E    +R  +   K  IQ I          +K 
Sbjct: 200 VMVRNGFKTNEIMVVLITTDKEIPKKEELIKDIRLEVENLKGVIQNISTKNNSLVLGDKC 259

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
                +DY+ + +        +     SF Q N      +    L     + GD  + + 
Sbjct: 260 ITLWGQDYISDYIG----KYKFNISPLSFFQINPIQTEVLYNKALE-YADLSGDEIVFDA 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  +L L+++  +V  VEI + +++ A  N   N ++N +     S+E        
Sbjct: 315 YCGAGTITLFLSQNARKVYGVEIVEQAIDNAIDNAEINGIDNSEFYVGKSEEV------- 367

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334
                + ++  +  +   I VDPPR G D   +  +       ++Y+SC+P +L RDL  
Sbjct: 368 -----IPELIKNGIKPDIIVVDPPRKGCDIKLLNAIGEAKPKRVVYVSCDPSTLARDLKH 422

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           L         +   D FP T+H+E   LL ++
Sbjct: 423 LEGFGFKTIEVQPVDMFPNTKHVETVALLTKR 454


>gi|295114059|emb|CBL32696.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76]
          Length = 457

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 151/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 92  YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LL R
Sbjct: 436 PVDNFPQTTHIECVGLLTR 454


>gi|257868017|ref|ZP_05647670.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC30]
 gi|257874347|ref|ZP_05654000.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC10]
 gi|257802100|gb|EEV31003.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC30]
 gi|257808511|gb|EEV37333.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC10]
          Length = 474

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 154/388 (39%), Gaps = 46/388 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNL----QIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y++QLA K  ++  ++    ++P +     I   +P  YR +A+  +      L 
Sbjct: 106 LSHLSYDKQLAFKQQQVENVLAKIAKLPEIKVKAPIGMEKPFGYRNKAQIPVQKIHGKLT 165

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108
              + + +   + I+ F      I+  +I++   ++            E  LR  + +  
Sbjct: 166 TGFYRKNSHTLVPIEDFYIQDPNIDQAIIKVRDILQRFNVKAYNEEAHEGFLRHIVVRRG 225

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKIC 161
           +    S + +V L+  +       E A  + + +      IQ I             ++ 
Sbjct: 226 H---HSGEMMVVLVTRKPKFFKGEEIAEVIHEEIPEVVSVIQNINEEKTNVIMGEFERVL 282

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
             +  +D++L        ++    SF Q N      + +      +  + D +++ Y G 
Sbjct: 283 YGKSSIDDQLLGK----TFQISAKSFYQINTAQTEVLYQTAFEMAQLSENDIVVDAYAGI 338

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + LA     VL +E+   +V  A+ N   N V NV      +++      RE    
Sbjct: 339 GTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYFIGKAEKIMPQWLRE---- 394

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-ST 337
                     +   +FVDPPR GLD + +    A     I+YISCNP +L RDL++    
Sbjct: 395 --------GIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLARDLALFEEE 446

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +  + +   D FP T H+EC VLL R+
Sbjct: 447 GYVTKEVQPVDLFPQTTHVECVVLLERR 474


>gi|260662798|ref|ZP_05863692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552879|gb|EEX25878.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           fermentum 28-3-CHN]
          Length = 458

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 148/378 (39%), Gaps = 39/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QL  K  ++++++    + NL++       +P  YR +A+  +           + +
Sbjct: 94  YPAQLKFKQRQIQELLEKAHL-NLEVAETLGMDQPFGYRNKAQVPVRMVKGQPTTGFYKR 152

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114
            + + + I+ F      I+  ++ +   +R              ++R  + +  Y + Q 
Sbjct: 153 GSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVPAYDEETHRGVIRTVMVRRGYYSHQV 212

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DERL 171
              +VT   H        E    + + +   K  +Q +       I   ++++   +  +
Sbjct: 213 MVVLVTNGEH---FPHVAEITREISERVPGIKSIVQNVNDKRTNVILGTKNHLLWGEPTI 269

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230
                 + +     SF Q N      + +  +  A       +++ YCG G  SL +A+H
Sbjct: 270 HDTLLGIDFTISPLSFYQVNPQQTERLYQTAIENAGLDGSQTVIDAYCGIGTISLAVAKH 329

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V  VEI   ++  A+ N A N + N   V   ++E     + E              
Sbjct: 330 AKHVYGVEIVPAAIADAKQNAANNGIENATFVVGKAEEQFAKWQAE------------GL 377

Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIER-LAL 346
           +   + VDPPR GLD   +      A   ++Y+SCNP +L RDL   +   + + + +  
Sbjct: 378 KPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDLQRFAEQGYHVTKPIQP 437

Query: 347 FDQFPYTRHMECGVLLVR 364
            DQFP T H+E   +L R
Sbjct: 438 VDQFPQTTHVESVTVLER 455


>gi|325507937|gb|ADZ19573.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA
           2018]
          Length = 460

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 147/389 (37%), Gaps = 42/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L   +Y +QL  K +++ + +      +L        I   +P  YR + +  +   
Sbjct: 85  GCQLQHLKYTEQLEFKKNKVVECLKRIGKLDLSSVRINETIGMEDPYFYRNKVQLPVGET 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
             +     + +++ E + +D                   I    IE       +  LR  
Sbjct: 145 AGEAKIGFYRERSHEIIEVDKCFIQDDSANEIILLIKRWIKEFNIEGYNEYSGKGTLRHI 204

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +  + T Q    +VT   +       +E    +   +   K  IQ I    KT + L 
Sbjct: 205 MIRKAFKTGQIMLVLVTNTENVP---HKKELIHMITTEIQGIKGIIQNINN-KKTNVILG 260

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           +     + +  +        +     SF Q N      +    L        +++ + YC
Sbjct: 261 QREITLWGESTIEDYIGEFKFNISSKSFFQMNPIQTEKLYSAALKYAGLTGKEVVFDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL L+++  +V  VEI   ++E A+ N   N + N + +   S+E          
Sbjct: 321 GTGTISLFLSQNAKKVYGVEIIPEAIENAKINAKQNGIENTEFIVGKSEE---------- 370

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
              +  +       + + VDPPR G + + +  +   +   I+Y+SC+P +L RDL ILS
Sbjct: 371 --EIPKLIEKGIAPEVVVVDPPRKGCEKSLLHSIAEASPKTIVYVSCDPATLSRDLGILS 428

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364
              + +  +   D FP T H+E  VL+ R
Sbjct: 429 ELGYEVNEVQPVDMFPMTGHVETIVLIKR 457


>gi|312865944|ref|ZP_07726165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei
           F0415]
 gi|311098348|gb|EFQ56571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei
           F0415]
          Length = 453

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 152/383 (39%), Gaps = 40/383 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            YE+QL  K  ++   +              I    P  YR +A+  +      L    F
Sbjct: 87  SYEKQLEFKRKQVVNNLSKIAGLTNIEVLPTIGMDHPYAYRNKAQVPVRRVNGQLETGFF 146

Query: 64  DQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTS 112
            + + + + I+ F      I+ L+I   +++    L+P        L+R  + +  + T 
Sbjct: 147 RKNSHDLVPIEDFYIQDKEIDKLIIFVRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTG 206

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVD 168
           ++   +VT    R       +   ++  A       IQ I   N T +    +    Y  
Sbjct: 207 ETMLVLVT---TRPKIFRIEQIIQQITQAFPEVVSIIQNINDKN-TNVVFGPEFRTLYGK 262

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVL 227
           + ++ +     YR    SF Q N  +   + +  +  +     D+ ++ Y G G   L L
Sbjct: 263 DTISDSLLGKTYRISAQSFYQVNTLMAEKLYQTAIDFSNLTAEDVVIDAYSGIGTIGLSL 322

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+   +V  VE+ + +VE A  N  AN V+N   V   +++   A  +            
Sbjct: 323 AQEVKQVYGVEVVEKAVEDAMENARANGVSNADYVCAPAEKAMVAWSKA----------- 371

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERL 344
              +   + VDPPR GL ++ +    A     I YISCNP ++ RD+ +       + ++
Sbjct: 372 -GIKPSAVLVDPPRKGLTESFIKASAAMQPKKITYISCNPATMARDIKLYEELGFKLTKV 430

Query: 345 ALFDQFPYTRHMECGVLLVRKPS 367
              D FP T H+E  VL+ R+ +
Sbjct: 431 QPVDLFPQTHHVETVVLMSRRDT 453


>gi|184155945|ref|YP_001844285.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|183227289|dbj|BAG27805.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
          Length = 458

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 148/378 (39%), Gaps = 39/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QL  K  ++++++    + NL++       +P  YR +A+  +           + +
Sbjct: 94  YPAQLKFKQRQIQKLLEKAHL-NLEVAETLGMDQPFGYRNKAQVPVRMVKGQPTTGFYKR 152

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114
            + + + I+ F      I+  ++ +   +R              ++R  + +  Y + Q 
Sbjct: 153 GSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVPAYDEETHRGVIRTVMVRRGYYSHQV 212

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DERL 171
              +VT   H        E    + + +   K  +Q +       I   ++++   +  +
Sbjct: 213 MVVLVTNGEH---FPHVAEITREISERVPGIKSIVQNVNDKRTNVILGTKNHLLWGEPTI 269

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230
                 + +     SF Q N      + +  +  A       +++ YCG G  SL +A+H
Sbjct: 270 HDNLLGIDFTISPLSFYQVNPQQTERLYQTAIENAGLDGSQTVIDAYCGIGTISLAVAKH 329

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V  VEI   ++  A+ N A N + N   V   ++E     + E              
Sbjct: 330 AKHVYGVEIVPAAIADAKQNAANNGIENATFVVGKAEEQFAKWQAE------------GL 377

Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIER-LAL 346
           +   + VDPPR GLD   +      A   ++Y+SCNP +L RDL   +   + + + +  
Sbjct: 378 KPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDLQRFAEQGYHVTKPIQP 437

Query: 347 FDQFPYTRHMECGVLLVR 364
            DQFP T H+E   +L R
Sbjct: 438 VDQFPQTTHVESVTVLER 455


>gi|256959863|ref|ZP_05564034.1| RNA methyltransferase [Enterococcus faecalis Merz96]
 gi|256950359|gb|EEU66991.1| RNA methyltransferase [Enterococcus faecalis Merz96]
          Length = 457

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 92  YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLARDIALLTEGGYEAKEIQ 435

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 436 PVDNFPQTTHIESVTLLTK 454


>gi|310658947|ref|YP_003936668.1| RNA methyltransferase [Clostridium sticklandii DSM 519]
 gi|308825725|emb|CBH21763.1| Uncharacterized RNA methyltransferase BCE_0363 [Clostridium
           sticklandii]
          Length = 475

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 139/387 (35%), Gaps = 41/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG- 55
              ++   Y +QL  K D + Q +              I    P +YR +A+F +  D  
Sbjct: 97  GCQIMQLNYSKQLEIKKDIVVQNLSRIGKVENPNVMDTIGMDNPYNYRNKAQFPVGIDKK 156

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  F + + E + +        +           I    I +      +  LR  +
Sbjct: 157 GKPVMGFFKKMSHEIIPLTTCYVQDTVNDVILDIIRQYIEKYKISLYDEKTHKGNLRHVV 216

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKI 160
            ++ + T +    +VT        DA  E        LR  +         +    + KI
Sbjct: 217 TKVGFHTHEIMVILVTKETKLPKIDALVEMLEAKLLGLRTLVQNINPNRTNVILGRENKI 276

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219
                 +++ +      L++     SF Q N      +    L        D++ ++YCG
Sbjct: 277 LYGDGIIEDTI----DDLVFEISPLSFYQVNPIQTKVLYNKALELADISSEDVVYDIYCG 332

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+    V  +EI K ++E A+ N   N++ N       ++E    +      
Sbjct: 333 IGTISLFLAKKAKHVYGIEIVKEAIENAKKNAKRNNIENASFYAGKAEEVVPELYS---- 388

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                          + VDPPR G ++  +  +       I+YISCNP +L RD+  LS 
Sbjct: 389 --------RGITADVVVVDPPRKGCEEIVLDTIAKMNPKKIVYISCNPSTLARDVERLSK 440

Query: 338 -THTIERLALFDQFPYTRHMECGVLLV 363
             + ++     D F +T H+E  +L+ 
Sbjct: 441 LGYEMDVAYPVDMFSHTMHVEAIILMT 467


>gi|154496443|ref|ZP_02035139.1| hypothetical protein BACCAP_00735 [Bacteroides capillosus ATCC
           29799]
 gi|150274526|gb|EDN01603.1| hypothetical protein BACCAP_00735 [Bacteroides capillosus ATCC
           29799]
          Length = 412

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 150/387 (38%), Gaps = 42/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHI-WHDGDDLYH 60
              +L   YE+QL  K  +L +++  F      +    P HYR +      W  G +L  
Sbjct: 44  GCPMLSLPYEEQLKRKQAKLEELLGKFGPVAPILGMEHPWHYRNKVISSFAWGPGKNLVS 103

Query: 61  IMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKLFQIDY 109
            ++ Q T   + ++  +    +++               +     R   L+R  L +   
Sbjct: 104 GIYAQGTHRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDENRRTGLIRHVLCRHSL 163

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
            T    + +  L+    +    R  A R+++   A     Q +          ++ KI  
Sbjct: 164 STG---EVLAVLVTASPVLPGARAFAARVKELCPAIVTLAQNVNPRPGSAVLGDREKILY 220

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNG 221
            R Y+++ L      + +R   +SF Q N      +    + AA    +  +L+ YCG G
Sbjct: 221 GRGYIEDVLC----GVKFRIAPSSFYQINPVQTEVLYSTAISAARLTGKERVLDAYCGVG 276

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A H   V+ VE+ + +   A  N  AN++ N +     +  F   M    E   
Sbjct: 277 TIGLSAAAHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAFLDGMAARGE--- 333

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338
                    +   +F+DPPR+G     +  +   +    +YISCNP++  RDL  L+   
Sbjct: 334 ---------QLDVVFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARG 384

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
              E +   D FP+T H+E   +L R+
Sbjct: 385 WRAESIQGVDMFPHTEHIETVAVLTRR 411


>gi|56418964|ref|YP_146282.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56378806|dbj|BAD74714.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 462

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 142/391 (36%), Gaps = 48/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53
              L    YE QL  K D + Q +                 I    P HYR +++F +  
Sbjct: 88  GCQLQHLAYEAQLEAKRDIVIQALRRHARRLDVDKLDIRPTIGMDNPWHYRNKSQFQVGM 147

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
               +   ++   +   + +                   ++  L I +        ++R 
Sbjct: 148 KEGKVLAGLYGLNSHRLIDLSECRVQHPQTTRVTNIVKTILQDLHIPIYNERTRMGVVRT 207

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RA 155
            + ++ + T      +VT        +   E    +R  L   K  +Q I          
Sbjct: 208 IVARVGFHTGDIQLVLVTATKDIPRKELLIE---EIRRRLPEVKSIVQNINGEKTSLIFG 264

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214
           ++T++    +Y+ E L      L +     +F Q N    V + + V  AA       ++
Sbjct: 265 DETEVLAGDEYIQETLG----DLSFELSARAFFQLNPLQTVKLYDEVKKAAALTGTERIV 320

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G   L LAR    V  ++    ++E A+ N   +   N   V   ++ +     
Sbjct: 321 DAYCGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAEYWLPKWV 380

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332
           +E             ++   I VDPPR G D A +  +       ++Y+SCNP SL RDL
Sbjct: 381 KE------------GWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLARDL 428

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
             L+  + I+ +   D FP+T H+E    L 
Sbjct: 429 DALAAQYRIDYIQPVDMFPHTAHVEAVAKLT 459


>gi|315172186|gb|EFU16203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1346]
          Length = 504

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 483 PVDNFPQTTHIESVTLLTK 501


>gi|229548674|ref|ZP_04437399.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|312953113|ref|ZP_07771962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|229306190|gb|EEN72186.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|310628947|gb|EFQ12230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0102]
 gi|315146955|gb|EFT90971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4244]
 gi|315153976|gb|EFT97992.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0031]
 gi|315156740|gb|EFU00757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0043]
          Length = 504

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPGVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 483 PVDNFPQTTHIESVTLLTK 501


>gi|225026873|ref|ZP_03716065.1| hypothetical protein EUBHAL_01127 [Eubacterium hallii DSM 3353]
 gi|224955797|gb|EEG37006.1| hypothetical protein EUBHAL_01127 [Eubacterium hallii DSM 3353]
          Length = 471

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/398 (22%), Positives = 163/398 (40%), Gaps = 55/398 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQI------FRSEPIHYRMRAEFHIW 52
              L    YE+QL+ K   +   +     F   +++          EP HYR +A+F + 
Sbjct: 91  GCKLQQISYEKQLSFKKSLVEGCLMRIGGFGKEDIEQKIEPVYGMEEPWHYRNKAQFPVG 150

Query: 53  HDG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LL 100
           +D   +L    +  +T   +        + + + ++ +++  ++              L+
Sbjct: 151 YDKEGNLVAGFYAGRTHSIVANTNCAIQAEVTHPIVEKVLTYMKENKISAYDEKNHSGLV 210

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R  L +I + T +    ++     + L         +L D L   +    +I   N  K 
Sbjct: 211 RHILTRIGFTTGEIMVCLIVNGTKKQLK-----HIDKLVDDLKTIEGMTSIIVNTNTDKT 265

Query: 161 ----------CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                        +DY+++ +      + Y+    SF Q N      +    L   +   
Sbjct: 266 NKILGLRCETVWGQDYIEDYIG----NIKYQIGPLSFYQVNPQQTKVLYSKALEYAELKG 321

Query: 211 GD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            + + +LYCG G  SL LA+   +V  VEI K +++ AR N A NH++NV+     ++E 
Sbjct: 322 QELVWDLYCGIGTISLFLAQKAKQVYGVEIIKEAIDDARRNAALNHMDNVEFFVGKAEEV 381

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
             A   +                  I VDPPR G D   +  +   A   I+Y+SC+P +
Sbjct: 382 VPAQYEK-----------TGIHPDVIVVDPPRKGCDAILLNTMLDMAPKRIVYVSCDPAT 430

Query: 328 LCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           L RDL IL    +T+E++++ DQF ++ H+E    L R
Sbjct: 431 LARDLKILCEEKYTLEKVSVVDQFSHSVHVESVCALKR 468


>gi|32266192|ref|NP_860224.1| tRNA (uracil-5-)-methyltransferase [Helicobacter hepaticus ATCC
           51449]
 gi|50401508|sp|Q7U326|TRMA_HELHP RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|32262242|gb|AAP77290.1| tRNA (uracil-5-)-methyltransferase TrmA [Helicobacter hepaticus
           ATCC 51449]
          Length = 404

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 129/390 (33%), Positives = 203/390 (52%), Gaps = 27/390 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF------------QVPNLQIFRSEPIHYRMRAEF 49
            G   I  Y  QL  K +   Q   +F                +++F S    +R RAEF
Sbjct: 10  GGCTNIQDYSTQLQAKHNLTLQEFQSFLDTKSKNFQYPTNPLAIEVFASPQEGFRARAEF 69

Query: 50  HIWH---DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106
              H   +   L   M       R+ I         +  +M  ++  +    LL  KL+ 
Sbjct: 70  RFSHVFQNKSGLDFAMNAFGYNHRVPIKKCPILLPTLQDIMPLLLHYLNTYDLLNHKLYA 129

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGRANKTKICLDRD 165
            + L+S  ++ I+TLIYH+ LD  W   A++++  L +     I +IGR+   K  L  D
Sbjct: 130 CNLLSSLQNEIIITLIYHKSLDSHWESLALKIQKELEYTLNTNIHIIGRSKNHKHILSND 189

Query: 166 YVDERLTV-----AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-----TKGIQGDLLE 215
            + E LT+       RT  + + E+ F QPN  IN  MLE++++A     T     D+LE
Sbjct: 190 IICEHLTLFANTPKERTYTFFKQESRFCQPNPFINTQMLEFIVSALSSIYTPQTPCDMLE 249

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG+GNF++ LA  F  + A E+ K ++   + N+A N++ N+   R+++ E  QA+R+
Sbjct: 250 LYCGSGNFTIPLASIFRHIFATEVVKSAITLLQKNMAKNNIENIIPARLNAFESIQALRK 309

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPHILYISCNPDSLCRDLSI 334
           ER F RLK+ID+ ++ F  + +DPPRSG+ ++  +  +Q +  I+Y+SCNP +L  DL I
Sbjct: 310 ERVFFRLKNIDLDAFAFDCVLIDPPRSGVGEEEVLYFLQNFNTIIYVSCNPHTLLNDLRI 369

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           LS +H + R  LFDQFP+T H EC V+L +
Sbjct: 370 LSQSHYVMRFGLFDQFPHTYHRECIVILRK 399


>gi|257420988|ref|ZP_05597978.1| RNA methyltransferase [Enterococcus faecalis X98]
 gi|257162812|gb|EEU92772.1| RNA methyltransferase [Enterococcus faecalis X98]
          Length = 457

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 92  YGAQLSFKTQQVENVMQRVAKLPGVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 436 PVDNFPQTTHIESVTLLTK 454


>gi|329767396|ref|ZP_08258921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
           M341]
 gi|328836085|gb|EGF85776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
           M341]
          Length = 458

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 157/386 (40%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDGD 56
              L+   YE+QL  K  +++ +M      +       +   +  HYR ++   +     
Sbjct: 87  GANLVHMNYEEQLKFKKKKVQNVMDKALGKDYVEVLETLGMEDGYHYRNKSVIPVQKVNG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105
           ++    +  ++ + + I+                  LI+ L + +         +R  +F
Sbjct: 147 EVKMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLSVYDENNHSGAIRHIMF 206

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKICL 162
           + + + S+    IV       LD+   + +    R+   +     +   +   +KT+   
Sbjct: 207 RTNTVKSEIMVGIVVKEKFNKLDEFVEKISKLDDRIVSIMLNINDKKTNVIFGDKTEKLF 266

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            +DY+ + L      + ++    SF Q N      +    L   +  + D +++ YCG G
Sbjct: 267 GQDYITDTL----DGIEFKISLRSFYQVNPVQTEVLYSKALELAELKETDTIIDAYCGIG 322

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL  A+   +V  +EI + +V  AR N   N++ N + +   S++  + +        
Sbjct: 323 TISLFAAKKVKKVYGIEIVEAAVLDARENAKNNNIENAEFLLGKSEDVIKKLIS------ 376

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338
                  + +   + VDPPR G +++ +  + +     I+Y+SCNP +L RD+ I+ +  
Sbjct: 377 ------QNIKLDAVIVDPPRKGCEESFLRDLASMGIEKIVYVSCNPSTLARDMEIMRSLG 430

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +  +   D FP T H+E   LL R
Sbjct: 431 YKLGAVQPVDMFPGTYHVEAVTLLER 456


>gi|227523038|ref|ZP_03953087.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227089856|gb|EEI25168.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 456

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 150/378 (39%), Gaps = 39/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y  QL  K  ++       ++    +  I   +P HYR +A+  +      L    + + 
Sbjct: 93  YPAQLEFKRHQILNDFNKMKLDVEVSPTIGMDKPYHYRNKAQIPVRMLNGRLQTGFYRKH 152

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ-SDQAI 118
           + + + I+ F      I+  ++ +   +         E   R  +  I       S + +
Sbjct: 153 SHDLVPIEDFYIQDPEIDKAVVIVRDILRKFQITPYDEQTHRGVIRNIMVRRGHYSHEMM 212

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDYVDERL 171
           + LI       +  E      + L   K  +Q I          N+ K+   +  + ++L
Sbjct: 213 IVLITKSKKLPSEAEIISETVNQLPEVKSIVQNINPKNTNSLMGNQNKVLWGKGTITDQL 272

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230
                 L +    NSF Q N      + +  +   +  + D +++ YCG G  SL LA+ 
Sbjct: 273 M----GLDFEISPNSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKV 328

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V  VEI   ++E A+ N   N ++N K V   ++E            +L        
Sbjct: 329 VKKVYGVEIVPEAIEDAKRNAHINKISNCKFVVAKAEE------------QLGKWQKAGL 376

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIER-LAL 346
           +   I VDPPR GLD++ +  V       ++Y+SCNP +L RD  + +   + I + +  
Sbjct: 377 KPDVIVVDPPRKGLDESLIESVAEMSLQRLIYVSCNPATLARDAKLFAEHGYQINQPIQP 436

Query: 347 FDQFPYTRHMECGVLLVR 364
            DQFP T H+E   +  +
Sbjct: 437 VDQFPQTVHVESVTVFEK 454


>gi|229546565|ref|ZP_04435290.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX1322]
 gi|307274683|ref|ZP_07555855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
 gi|307284510|ref|ZP_07564672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|307296382|ref|ZP_07576206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|229308310|gb|EEN74297.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX1322]
 gi|306496037|gb|EFM65622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0411]
 gi|306503187|gb|EFM72441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0860]
 gi|306508612|gb|EFM77710.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2134]
 gi|315029097|gb|EFT41029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4000]
          Length = 504

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 483 PVDNFPQTTHIESVTLLTK 501


>gi|261418755|ref|YP_003252437.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|319765571|ref|YP_004131072.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
 gi|261375212|gb|ACX77955.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|317110437|gb|ADU92929.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
          Length = 467

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 142/388 (36%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53
              L    YE QL  K D + Q +                 I    P HYR +++F +  
Sbjct: 93  GCQLQHLSYEAQLEAKRDIVIQALRRHARRLDVDKLDIRPTIGMDNPWHYRNKSQFQVGM 152

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
               +   ++   +   + +                   ++  L I +        ++R 
Sbjct: 153 KEGKVLAGLYGINSHRLIDLSECRVQHPQTTRVTNIVKTILQDLRIPIYNERTRTGVVRT 212

Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            + ++ + T      +VT    +   +LL D  R     ++  +     +   +   ++T
Sbjct: 213 IVVRVGFHTGDIQLVLVTATKDIPRKQLLIDEIRRRLPEVKSIVQNINGEKTSLIFGDET 272

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217
           ++    +Y+ E L      L +     +F Q N    V + + V  AA       +++ Y
Sbjct: 273 EVLAGDEYIQETLG----DLSFELSSRAFFQLNPLQTVKLYDEVKKAAALTGTERIVDAY 328

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L LAR    V  ++    ++E A+ N   +   N   V   ++          
Sbjct: 329 CGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAE---------- 378

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
               L       ++   I VDPPR G D A +  +       ++Y+SCNP SL RDL  L
Sbjct: 379 --YWLPKWVKGGWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLARDLDAL 436

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
           +  + ++ +   D FP+T H+E    L 
Sbjct: 437 AAQYRVDYIQPVDMFPHTAHVEAVAKLT 464


>gi|299783515|gb|ADJ41513.1| TrmA family tRNA (Uracil-5-)-methyltransferase [Lactobacillus
           fermentum CECT 5716]
          Length = 469

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 148/378 (39%), Gaps = 39/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QL  K  ++++++    + NL++       +P  YR +A+  +           + +
Sbjct: 94  YPAQLKFKQRQIQELLEKAHL-NLEVAETLGMDQPFGYRNKAQVPVRMVKGQPTTGFYKR 152

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114
            + + + I+ F      I+  ++ +   +R              ++R  + +  Y + Q 
Sbjct: 153 GSHDLVPIEDFYIQDPAIDQTVLVVRDLLRKYQVPAYDEETHRRVIRTVMVRRGYYSHQV 212

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DERL 171
              +VT   H        E    + + +   K  +Q +       I   ++++   +  +
Sbjct: 213 MVVLVTNGEH---FPHVAEITREISERVPGIKSIVQNVNDKRTNVILGTKNHLLWGEPTI 269

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230
                 + +     SF Q N      + +  +  A       +++ YCG G  SL +A+H
Sbjct: 270 HDTLLGIDFTISPLSFYQVNPQQTERLYQTAIENAGLDGSKTVIDAYCGIGTISLAVAKH 329

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V  VEI   ++  A+ N A N + N   V   ++E     + E              
Sbjct: 330 AKHVYGVEIVPAAIADAKQNAANNGIENATFVVGKAEEQFAKWQAE------------GL 377

Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIER-LAL 346
           +   + VDPPR GLD   +      A   ++Y+SCNP +L RDL   +   + + + +  
Sbjct: 378 KPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDLQRFAEQGYHVTKPIQP 437

Query: 347 FDQFPYTRHMECGVLLVR 364
            DQFP T H+E   +L R
Sbjct: 438 VDQFPQTTHVESVTVLER 455


>gi|315170705|gb|EFU14722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1342]
          Length = 468

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 103 YGAQLSFKTQQVENVMQRVAKLPGVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 162

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 163 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 222

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 223 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 278

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 279 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 338

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 339 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 386

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 387 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 446

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 447 PVDNFPQTTHIESVTLLTK 465


>gi|257415298|ref|ZP_05592292.1| RNA methyltransferase [Enterococcus faecalis AR01/DG]
 gi|257157126|gb|EEU87086.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG]
          Length = 457

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 92  YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 436 PVDNFPQTTHIESVTLLTK 454


>gi|227512910|ref|ZP_03942959.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           buchneri ATCC 11577]
 gi|227083910|gb|EEI19222.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           buchneri ATCC 11577]
          Length = 456

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 150/378 (39%), Gaps = 39/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y  QL  K  ++       ++    +  I   +P HYR +A+  +      L    + + 
Sbjct: 93  YPAQLEFKRHQILNDFNKMKLDVEVSPTIGMDKPYHYRNKAQIPVRMLNGRLQTGFYRKH 152

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ-SDQAI 118
           + + + I+ F      I+  ++ +   +         E   R  +  I       S + +
Sbjct: 153 SHDLVPIEDFYIQDPEIDKAVVIVRDILRKFQITPYDEQTHRGVIRNIMVRRGHYSHEMM 212

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDYVDERL 171
           + LI       +  E      + L   K  +Q I          N+ K+   +  + ++L
Sbjct: 213 IVLITKSKKLPSEAEIISETVNQLPEVKSIVQNINPKNTNSLMGNQNKVLWGKGTITDQL 272

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230
                 L +    NSF Q N      + +  +   +  + D +++ YCG G  SL LA+ 
Sbjct: 273 M----GLDFEISPNSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKV 328

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V  VEI   ++E A+ N   N ++N K V   ++E            +L        
Sbjct: 329 VKKVYGVEIVPEAIEDAKRNAHINKISNCKFVVAKAEE------------QLGKWQKAGL 376

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIER-LAL 346
           +   I VDPPR GLD++ +  V       ++Y+SCNP +L RD  + +   + I + +  
Sbjct: 377 KPDVIVVDPPRKGLDESLIESVAEMSPQRLIYVSCNPATLARDAKLFAEHGYQINQPIQP 436

Query: 347 FDQFPYTRHMECGVLLVR 364
            DQFP T H+E   +  +
Sbjct: 437 VDQFPQTVHVESVTVFEK 454


>gi|237752331|ref|ZP_04582811.1| tRNA (uracil-5-)-methyltransferase [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375820|gb|EEO25911.1| tRNA (uracil-5-)-methyltransferase [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 367

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 130/354 (36%), Positives = 215/354 (60%), Gaps = 10/354 (2%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER-MR 72
           L  K++    ++      + ++F+SE  H+R RAE  I+HD  ++++ M  +  KER ++
Sbjct: 19  LESKINFASSLL---NFKDFEVFKSEQSHFRARAELGIYHDNREIFYTM--RGEKERFVK 73

Query: 73  IDYFMPGSLLINALMIEMMATIRLEP--LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           I         I   +  ++A +  +     + +LF ++ L +Q++  ++TLIYHR L+++
Sbjct: 74  IVNCQNLLPNIQKTLPVLLAILNSKDFNAFKERLFSLEILANQNNALLLTLIYHRKLEES 133

Query: 131 WRECAIRLRDALHA-RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           W + A +L+  L     +  +++GR+   K+ L++DY+ + L + G+   YR  E +F+Q
Sbjct: 134 WIQEAKKLQLKLEKFLGFHFEIVGRSRGVKLVLEKDYLMQTLEILGKQFCYRYNEGAFSQ 193

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA IN  M+ WVL       GDLLE+YCG GNF++ L+  F +VLA E++K S+ A ++
Sbjct: 194 PNATINQQMITWVLE-HLKEGGDLLEMYCGCGNFTIPLSFCFGKVLATEVSKTSINALKF 252

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
               N + N+  VR+S  E  +A+  +REFNRLK ID++++ FK++FVDPPR GL     
Sbjct: 253 ACETNQIPNIYSVRLSGAECIEALNGKREFNRLKHIDLNTFNFKSVFVDPPRCGLGLEVC 312

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
             ++ +  I+YISCNP +L +DL IL  TH I+  A FDQF +T+H+ECGV+L 
Sbjct: 313 AFLKRFKQIIYISCNPVTLAQDLDILKQTHKIKHAAFFDQFAHTKHLECGVILE 366


>gi|227554844|ref|ZP_03984891.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis HH22]
 gi|312900324|ref|ZP_07759635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
 gi|312904253|ref|ZP_07763415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|227176013|gb|EEI56985.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis HH22]
 gi|310632349|gb|EFQ15632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0635]
 gi|311292512|gb|EFQ71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0470]
 gi|315031445|gb|EFT43377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0017]
 gi|315166923|gb|EFU10940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1341]
 gi|315575356|gb|EFU87547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309B]
 gi|315578799|gb|EFU90990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0630]
 gi|315581386|gb|EFU93577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0309A]
          Length = 504

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLQEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 483 PVDNFPQTTHIESVTLLTK 501


>gi|255971187|ref|ZP_05421773.1| RNA methyltransferase [Enterococcus faecalis T1]
 gi|255973811|ref|ZP_05424397.1| RNA methyltransferase [Enterococcus faecalis T2]
 gi|257083655|ref|ZP_05578016.1| RNA methyltransferase [Enterococcus faecalis Fly1]
 gi|255962205|gb|EET94681.1| RNA methyltransferase [Enterococcus faecalis T1]
 gi|255966683|gb|EET97305.1| RNA methyltransferase [Enterococcus faecalis T2]
 gi|256991685|gb|EEU78987.1| RNA methyltransferase [Enterococcus faecalis Fly1]
 gi|323479924|gb|ADX79363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           62]
          Length = 457

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 92  YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 436 PVDNFPQTTHIESVTLLTK 454


>gi|227530251|ref|ZP_03960300.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           vaginalis ATCC 49540]
 gi|227349840|gb|EEJ40131.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           vaginalis ATCC 49540]
          Length = 458

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 155/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +YE QL  K  ++ +++    +  +++       +P HYR +A+  +      L  
Sbjct: 88  LGHLKYEAQLKFKQHQIAELLAKAHLDEIEVLPTMGMDKPYHYRNKAQVPVKMVRGQLET 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
             + + +   + I+ F      I+ ++I +   +R            + ++R  + +  Y
Sbjct: 148 GFYKRGSHTLVPIEDFYIQDPAIDQVIIVVRDLLRKYHVTPYDERTGKGVIRTVMVRRGY 207

Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
            + +    +VT    L     + D        ++  +     +       +K K     D
Sbjct: 208 YSHEVMVVLVTNTKRLPMAEQIVDGIVAVVPEVKSIVQNINDKKTNRLLGDKNKTLWGAD 267

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
            + ++L      + +     SF Q N      + +  +  A       +++ YCG G  S
Sbjct: 268 EIHDQLL----GIDFAISPLSFYQVNPQQTERLYQTAIDNAGLDGSQTVIDAYCGIGTIS 323

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L +A+H  +V  VEI   +++ A++N   N + N K V   ++E     + +        
Sbjct: 324 LAVAKHAKQVYGVEIVPAAIDDAKHNAKRNGIKNAKFVVGKAEEQFAKWQED-------- 375

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341
                 +   + VDPPR GL ++ +      A   ++Y+SCNP +L RD+   +   + +
Sbjct: 376 ----GLKPDVVIVDPPRKGLAESLIEATGKMAPQKVIYVSCNPATLIRDIQRFAEQGYHV 431

Query: 342 ER-LALFDQFPYTRHMECGVLLVR 364
            + +   DQFP T H+E   +L R
Sbjct: 432 TKPIQPVDQFPQTTHVESVAVLER 455


>gi|307289579|ref|ZP_07569523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|306499393|gb|EFM68766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0109]
 gi|315164578|gb|EFU08595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1302]
          Length = 504

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 483 PVDNFPQTTHIESVTLLTK 501


>gi|256957402|ref|ZP_05561573.1| RNA methyltransferase [Enterococcus faecalis DS5]
 gi|256964435|ref|ZP_05568606.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
 gi|257077602|ref|ZP_05571963.1| RNA methyltransferase [Enterococcus faecalis JH1]
 gi|294779933|ref|ZP_06745314.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
 gi|256947898|gb|EEU64530.1| RNA methyltransferase [Enterococcus faecalis DS5]
 gi|256954931|gb|EEU71563.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
 gi|256985632|gb|EEU72934.1| RNA methyltransferase [Enterococcus faecalis JH1]
 gi|294452982|gb|EFG21403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           PC1.1]
          Length = 457

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 92  YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 436 PVDNFPQTTHIESVTLLTK 454


>gi|196250256|ref|ZP_03148949.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
 gi|196210145|gb|EDY04911.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
          Length = 469

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 143/387 (36%), Gaps = 42/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53
              L    YE QL  K D + Q +                 I  ++P HYR +++F +  
Sbjct: 93  GCQLQHLSYEAQLEAKRDIVIQALRRHVRRLDVDKIDIRPTIGMNDPWHYRNKSQFQVGV 152

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
               +   ++   +   + +                   ++  L I +        ++R 
Sbjct: 153 KKGKVLAGLYGLNSHRLIDLSECRVQHPQTTRVTNIVKTILQDLRIPIYNERTRTGVVRT 212

Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            + ++ + T      +VT    +    LL D  R     ++  +     +   +   ++T
Sbjct: 213 IVARVGFHTGDIQIVLVTATKDIPRKELLIDEIRRRLPEVKSIVQNINGEKTSLIFGDET 272

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELY 217
           ++    +Y+ E L      L +     +F Q N    V + + V  A+       +++ Y
Sbjct: 273 EVLAGDEYIQETLG----DLSFELSARAFFQLNPIQTVKLYDEVKKASALTGTERIVDAY 328

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L LAR    V  ++    ++E A+ N   +   N   V   ++          
Sbjct: 329 CGVGTIGLWLARDAKEVRGMDTIPEAIEDAKKNAKKHGFENTHYVVGKAE---------- 378

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL 335
               L       ++   + VDPPR G D A +  +       ++Y+SCNP SL RDL  L
Sbjct: 379 --YWLPKWVKQGWKPDVVIVDPPRVGCDRALLETILRVRPQTVVYVSCNPSSLARDLDTL 436

Query: 336 STTHTIERLALFDQFPYTRHMECGVLL 362
           +  + ++ +   D FP+T H+E    L
Sbjct: 437 ARAYRVDYIQPVDMFPHTAHVETVAKL 463


>gi|323439838|gb|EGA97554.1| RNA methyltransferase [Staphylococcus aureus O11]
 gi|323443001|gb|EGB00622.1| RNA methyltransferase [Staphylococcus aureus O46]
          Length = 453

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 149/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++      + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPAGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWSQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A H   V  VE+   ++E A+ N   N  NN   V   ++E     +     
Sbjct: 318 IGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|187776694|ref|ZP_02993167.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC
           15579]
 gi|187775353|gb|EDU39155.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC
           15579]
          Length = 459

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 143/387 (36%), Gaps = 37/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              +    Y+ QL  K  R+   +      ++        I    P  YR + +  +  +
Sbjct: 85  GCQVQHYSYKAQLDFKKRRVIDSLKRIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107
            D++    +  +T E   +               +I   M +   +   E + +  +  I
Sbjct: 145 KDEIKIGFYRPRTHEVADVKECFIQDEQADKIIQIIRNWMGKYNISAYNEEIGKGFIRHI 204

Query: 108 DYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
               +    +  +V +           E    +   L   K  IQ +  + KT + L   
Sbjct: 205 MVRKAFKNKELMLVIVTNKEKEIPHKEELIDEVIKELPNMKSIIQNVN-SKKTNVILGEK 263

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               +  + +T       +     SF Q N      + +  L        + + + YCG 
Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEILYKKALEFADLKGEEIVFDAYCGT 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E            
Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV----------- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337
            + D+     +   I VDPPR G +   +  +       I+Y+SC+P +L RDL IL+  
Sbjct: 373 -IPDLINKGIKADVIVVDPPRKGCEKTLLEAIADIKPKRIVYVSCDPGTLARDLGILNGL 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  + +   D FP T H+EC VL+ R
Sbjct: 432 GYETKEVQPVDMFPQTSHVECVVLITR 458


>gi|295108003|emb|CBL21956.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus obeum A2-162]
          Length = 455

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 147/393 (37%), Gaps = 45/393 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
              L    YE+Q A K  +LR  +              I   EP HYR +A+F +  +  
Sbjct: 81  GCQLQAVSYEEQKAFKEKKLRGHLERIGGFKELPMEPLIGMDEPYHYRNKAQFPVGRNKE 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
             +    +  +T   +       G              +    I     +  + L+R   
Sbjct: 141 GRIVTGFYAGRTHAIIENRDCALGIPQNKEVLDRVIAHMEKYNIAPYDEMTGKGLVRHIF 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ARKYQIQLIGRANKT 158
            +  + T    + +V LI +       +E   +L +             +   +   +K 
Sbjct: 201 VRYGFFTG---ELMVCLIINGQDLPHQKELVEKLGEIPGMTSISLNINKKRNNVILGDKV 257

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
           K    ++Y+ +++      + Y     SF Q N      +    L  A    +  + +LY
Sbjct: 258 KTIWGKEYITDKIG----DISYEISPLSFFQVNPHQTWKLYSKALEYADLHGEETVWDLY 313

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  SL LA+    V  VEI   ++E AR N   N ++NV+     ++E      RE 
Sbjct: 314 CGIGTISLFLAQKAKFVRGVEIVPAAIEDARRNAHLNEIDNVEFFVGKAEEVLP---REY 370

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
           E N              I VDPPR G D+  +  +       ++Y+SC+  +L RDL  L
Sbjct: 371 EKN--------GVYADVIVVDPPRKGCDEMLLKTILKMQPKRVVYVSCDSATLARDLRFL 422

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
               + ++++   DQFP T H+E    L R  S
Sbjct: 423 CDNGYELKKVCGVDQFPQTVHVEVVCCLHRVNS 455


>gi|29375324|ref|NP_814478.1| RNA methyltransferase [Enterococcus faecalis V583]
 gi|256617615|ref|ZP_05474461.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256761497|ref|ZP_05502077.1| RNA methyltransferase [Enterococcus faecalis T3]
 gi|257089155|ref|ZP_05583516.1| RNA methyltransferase [Enterococcus faecalis CH188]
 gi|257418339|ref|ZP_05595333.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
 gi|50401543|sp|Q837V0|Y728_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_0728
 gi|29342784|gb|AAO80548.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
 gi|256597142|gb|EEU16318.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256682748|gb|EEU22443.1| RNA methyltransferase [Enterococcus faecalis T3]
 gi|256997967|gb|EEU84487.1| RNA methyltransferase [Enterococcus faecalis CH188]
 gi|257160167|gb|EEU90127.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
          Length = 457

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 92  YGAQLSFKTQQVENVMQRVAKLQEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 436 PVDNFPQTTHIESVTLLTK 454


>gi|223044024|ref|ZP_03614064.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
           SK14]
 gi|222442567|gb|EEE48672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
           SK14]
          Length = 455

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 69/391 (17%), Positives = 139/391 (35%), Gaps = 41/391 (10%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG 55
            G  +    Y+ QL  K +++  +               +   +P  YR +++  +  D 
Sbjct: 81  GGCQMQHMTYQAQLNMKKEQVVNLFHRKGPFEDIPIQPTLGMEQPWRYRNKSQIPVGKDK 140

Query: 56  D-DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
           D       + Q++ + + +D  +                 N L + +        L+R  
Sbjct: 141 DNKAIMGFYRQRSHDIIDMDSCLIQDEQHQNIMNYVKHWFNELNMSIYDEKNKRGLMRHL 200

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTK 159
           + +  Y T +     VT        +   +  I     +             +    ++ 
Sbjct: 201 VIRTGYHTDEIMVIFVTNGKKFKNANVLVQKLISEFPNITSIKQNINDTHSNVIMGPQSV 260

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
               +D + + L+     + +   + SF Q N+     + +  +   +    + +L+ YC
Sbjct: 261 TLYGKDKIVDELS----EVTFNISDQSFYQINSAQTEKLYQKAIDYAQLTGEEIVLDTYC 316

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L +A     V  VE+   +++ A+ N   N +NN       +++     +    
Sbjct: 317 GIGTIGLYMAPQAKHVYGVEVVPSAIKDAQENATKNQLNNTTFECGKAEDVILEWKA--- 373

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336
                       +   + VDPPR G D+  +  +       I+YISCNP +  RD  +LS
Sbjct: 374 ---------QGIKPDVVMVDPPRKGCDETFIKTLLKLNPKRIVYISCNPSTQQRDAQLLS 424

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             + +  +   D FP T H+E   L  RK +
Sbjct: 425 DNYHLVEITPVDMFPQTTHIETVALFERKEN 455


>gi|317502259|ref|ZP_07960432.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316896374|gb|EFV18472.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 590

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/407 (21%), Positives = 146/407 (35%), Gaps = 54/407 (13%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51
            G  + +  YE+QL  K  ++R  +                  I    P +YR +A+F  
Sbjct: 99  GGCQIQEMSYEKQLEFKERKVRGNLERIGGFSSELLECTKEPIIGMETPFYYRNKAQFPF 158

Query: 52  WHDG-DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99
             D   +     +  +T + +     + G+ +           +    I          L
Sbjct: 159 GTDKEGNPVTGFYAGRTHDIIANTNCILGAAVNEHILESILDFMKKYKIRSYDEKTGTGL 218

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR----------KYQI 149
            R  L +  + T +     V           W      L + L               + 
Sbjct: 219 FRHVLLRYGFTTKEIMVCFVVNKDKADKSGEWFPHQKELVEELAKIDGMTSITASPNTKR 278

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
             +   +  ++   + Y+ + +     ++ Y+    SF Q N      +    L    G+
Sbjct: 279 TNVIMGDTFEVLWGQGYITDYIG----SVKYQISPLSFYQVNPVQTEKLYSQALE-YAGL 333

Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +GD  + +LYCG G  SL LA+   +V  VEI  P+++ AR N   N + N +     S+
Sbjct: 334 KGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPPAIDDARENALLNGIENAQFFVGKSE 393

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325
           E      ++ E    +           I VDPPR G D   +  +       I+Y+SC+ 
Sbjct: 394 EILPKYYKDYE----EQHGGEKAHADVIVVDPPRKGCDAELLETILKMQPERIVYVSCDS 449

Query: 326 DSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
            +L RDL IL            + IE+    DQFP T H+E  VLL 
Sbjct: 450 ATLARDLKILCEGAQEDEKTAGYQIEKWRAVDQFPMTTHVETVVLLS 496


>gi|302387197|ref|YP_003823019.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
 gi|302197825|gb|ADL05396.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
          Length = 563

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 148/390 (37%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60
              LL   Y++QL +K   L +++  F      I    P HYR +      HD   +   
Sbjct: 190 GCQLLDMPYKKQLEQKQKNLEELLKPFCRVAPIIGMDNPYHYRNKVHAVFDHDRKGNPIS 249

Query: 61  IMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDY 109
            +++  +   + ++  M      + +            I          LLR  L +  +
Sbjct: 250 GVYEANSHRVVPVESCMIEDQKADEIIGTIRGMLKSFKIRTYDEDTGYGLLRHVLIRRGF 309

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
            T    + +V L+    +  +       LR+        IQ +          +K  +  
Sbjct: 310 TTG---EVMVVLVTSSPVFPSKNNFVKALREKHPEITTIIQNVNDRETSMVLGDKEHVLF 366

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNG 221
            + Y+++ L        +R    SF Q N      + +  + AA    +  +++ YCG G
Sbjct: 367 GKGYIEDILC----GCRFRISSKSFYQVNPVQTEVLYQKAIEAAGLTGKERVIDAYCGIG 422

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              +V +++ + V+ VE+ + +V+ A  N   N + N++     + +F   M        
Sbjct: 423 TIGIVASKYANEVIGVELNRDAVKDAVENAKINGIKNIRFFCNDAGKFMMNMAE------ 476

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STT 338
                        +F+DPPRSG  +  +  V       ++Y+SC P++L RDL       
Sbjct: 477 ------IGEHVDVVFMDPPRSGSTEEFIDSVAKIRPEKVIYVSCGPETLARDLGYFRKKG 530

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           +  +     D FP T H+E  +L+ R  SG
Sbjct: 531 YEAKMGWGVDMFPATSHVEAIILMTRSGSG 560


>gi|256854405|ref|ZP_05559769.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|256709965|gb|EEU25009.1| RNA methyltransferase [Enterococcus faecalis T8]
 gi|315151570|gb|EFT95586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0012]
 gi|327534318|gb|AEA93152.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
           OG1RF]
          Length = 468

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 103 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 162

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 163 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 222

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 223 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 278

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 279 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 338

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 339 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 386

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 387 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 446

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 447 PVDNFPQTTHIESVTLLTK 465


>gi|307269782|ref|ZP_07551112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|307272542|ref|ZP_07553795.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
 gi|306510827|gb|EFM79844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0855]
 gi|306513892|gb|EFM82494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX4248]
 gi|315036107|gb|EFT48039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0027]
 gi|329576886|gb|EGG58371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX1467]
          Length = 468

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 103 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 162

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 163 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 222

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 223 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 278

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 279 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 338

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 339 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 386

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 387 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 446

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 447 PVDNFPQTTHIESVTLLTK 465


>gi|227509977|ref|ZP_03940026.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227190583|gb|EEI70650.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 456

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 152/378 (40%), Gaps = 39/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y  QL  K  +++      ++    +  I   +P HYR +A+  +      L    + + 
Sbjct: 93  YPAQLEFKRHQIQNDFNKMKLDVEVSPTIGMDKPYHYRNKAQIPVRMLNGRLQTGFYRKH 152

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ-SDQAI 118
           + + + I+ F      I+  ++ +   +         E   R  +  I       S + +
Sbjct: 153 SHDLVPIEDFYIQDPEIDKAVVIVRDILRKFQITPYDEQTHRGVIRNIMVRRGHYSHEMM 212

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDYVDERL 171
           + LI       +  E      + L   K  +Q I          N+ K+   +  + ++L
Sbjct: 213 IVLITKSKKLPSEAEIISETVNQLPEVKSIVQNINPKNTNSLMGNQNKVLWGKGTITDQL 272

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230
                 L +    NSF Q N      + +  +   +  + D +++ YCG G  SL LA+ 
Sbjct: 273 M----GLDFEISPNSFYQVNPIQTEKLYKLAIQKAQLNKDDIVIDAYCGIGTISLSLAKV 328

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V  VEI   ++E A+ N   N ++N K+V   ++E            +L        
Sbjct: 329 VKKVYGVEIVPEAIEDAKRNAHINKISNCKVVVAKAEE------------QLGKWQKAGL 376

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIER-LAL 346
           +   I VDPPR GLD++ +  V       ++Y+SCNP +L RD  + +   + I + +  
Sbjct: 377 KPDVIVVDPPRKGLDESLIESVAEMSPQRLIYVSCNPATLARDAKLFAEHGYQINQPIQP 436

Query: 347 FDQFPYTRHMECGVLLVR 364
            DQFP T H+E   +  +
Sbjct: 437 VDQFPQTVHVESVTVFEK 454


>gi|148381310|ref|YP_001255851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 3502]
 gi|153931489|ref|YP_001385686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 19397]
 gi|153937212|ref|YP_001389092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. Hall]
 gi|148290794|emb|CAL84928.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC
           3502]
 gi|152927533|gb|ABS33033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933126|gb|ABS38625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. Hall]
          Length = 461

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 148/388 (38%), Gaps = 37/388 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              +    Y+ QL  K  R+   +      ++        I    P  YR + +  +  +
Sbjct: 85  GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107
             ++    +  +T E   +               +I   M++   +   E   +  +  I
Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204

Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRE-CAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
               + ++ + ++ ++ ++  +  ++E     +       K  IQ I    KT + L   
Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEGLINEVIKEFSNIKSIIQNINT-KKTNVILGEK 263

Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
            +     + +T       +     SF Q N      + +  L        + + + YCG 
Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E            
Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV----------- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337
            + D+     +   + VDPPR G +   +  + A     I+Y+SC+P +L RDL IL+  
Sbjct: 373 -IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDLGILNGL 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +    +   D FP T H+E  VLL RK
Sbjct: 432 GYETREVQPVDMFPQTSHVETCVLLQRK 459


>gi|138894075|ref|YP_001124528.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265588|gb|ABO65783.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 464

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 143/387 (36%), Gaps = 42/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53
              L    YE QL  K D + Q +                 I  ++P HYR +++F +  
Sbjct: 88  GCQLQHLSYEAQLEAKRDIVIQALRRHVRRLDVDKIDIRPTIGMNDPWHYRNKSQFQVGV 147

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
               +   ++   +   + +                   ++  L I +        ++R 
Sbjct: 148 KKGKVLAGLYGLNSHRLIDLSECRVQHPQTTRVTNIVKTILQDLRIPIYNERTRTGVVRT 207

Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            + ++ + T      +VT    +    LL D  R     ++  +     +   +   ++T
Sbjct: 208 IVARVGFHTGDIQIVLVTATKDIPRKELLIDEIRRRLPEVKSIVQNINGEKTSLIFGDET 267

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELY 217
           ++    +Y+ E L      L +     +F Q N    V + + V  A+       +++ Y
Sbjct: 268 EVLAGDEYIQETLG----DLSFELSARAFFQLNPIQTVKLYDEVKKASALTGTERIVDAY 323

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L LAR    V  ++    ++E A+ N   +   N   V   ++          
Sbjct: 324 CGVGTIGLWLARDAKEVRGMDTIPEAIEDAKKNAKKHGFENTHYVVGKAE---------- 373

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL 335
               L       ++   + VDPPR G D A +  +       ++Y+SCNP SL RDL  L
Sbjct: 374 --YWLPKWVKQGWKPDVVIVDPPRVGCDRALLETILRVRPQTVVYVSCNPSSLARDLDTL 431

Query: 336 STTHTIERLALFDQFPYTRHMECGVLL 362
           +  + ++ +   D FP+T H+E    L
Sbjct: 432 ARAYRVDYIQPVDMFPHTAHVETVAKL 458


>gi|300861732|ref|ZP_07107812.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TUSoD Ef11]
 gi|300848257|gb|EFK76014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TUSoD Ef11]
          Length = 457

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 92  YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNSGNLRHIVVRRGYHTGE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLNLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 436 PVDNFPQTTHIESVTLLTK 454


>gi|325264644|ref|ZP_08131374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
 gi|324030306|gb|EGB91591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
          Length = 567

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 151/396 (38%), Gaps = 39/396 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51
            G  + +  YE+QL  K ++++  +             V    +    P +YR +A+F  
Sbjct: 78  GGCQIQELSYEKQLEFKENKVKGNLERIGGFAPELLERVTEPIVGMEVPFYYRNKAQFPF 137

Query: 52  WHDG-DDLYHIMFDQQTKERMRIDYF---MPGSLLINALMIEMM--------ATIRLEPL 99
             D   +     +  +T + +        +P +  I  L++  M               L
Sbjct: 138 GTDKEGNPVTGFYAGRTHDIIANTDCALGVPVNKQILELILAFMKKYGITAYDEKTGRGL 197

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRAN 156
           +R  L +  ++T +    +V             E    +        +   +   +   +
Sbjct: 198 IRHALIRFGFVTKEIMVCLVINGKTIPHSAELIEELKEIPGMTSITTSVNRKKTNVIMGD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214
              I   + ++ + +      + Y+    SF Q N      +    L    G++G+  + 
Sbjct: 258 SYDILWGQGFITDYIG----GIKYQISPLSFYQVNPVQTEKLYGLALE-YAGLKGNETVW 312

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL LA+   +V  VEI   ++E AR N   N + N +     +++      
Sbjct: 313 DLYCGIGTISLFLAQKAKQVYGVEIVPQAIEDARNNAEINGIGNAEFYTGRAEDVLPEYY 372

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
           RE       +          I VDPPR G +++ +  +       I+Y+SC+  +L RDL
Sbjct: 373 REYAM----EHPGEKAHADVIVVDPPRKGCEESLLKTMAEMEPDRIVYVSCDSATLARDL 428

Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             LS   + + R+   DQFP   H+E  VLL  K +
Sbjct: 429 KYLSGEGYELVRVRAVDQFPMGVHVETVVLLSHKKA 464


>gi|170760987|ref|YP_001788698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169407976|gb|ACA56387.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 461

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 152/388 (39%), Gaps = 37/388 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              +    Y+ QL  K  R+   +      ++        I    P  YR + +  +  +
Sbjct: 85  GCQVQHYSYKAQLDFKKRRVIDSLERIGKLDIDKIEIKDTIGMENPYRYRNKIQMPVRFE 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107
             ++    +  +T E   +               +I   M +   +   E   +  +  I
Sbjct: 145 KGEIKIGFYKPRTHEVADVKECFIQDEQADEIIQIIRNWMAKHNISAYNEETGKGFIRHI 204

Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRECAI-RLRDALHARKYQIQLIGRANKTKICLDRD 165
               + ++++ ++ ++ ++  +  ++E  I  +   L   K  +Q +    KT + L   
Sbjct: 205 MVRKAFKNEELMLVIVTNKENEIPYKEELISEVIKKLDNIKSIVQNVNT-KKTNVILGEK 263

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               +  + +T       +     SF Q N      + +  L        + + + YCG 
Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E            
Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV----------- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337
            + D+     +   + VDPPR G + + +  + A     I+Y+SC+P +L RDL IL+  
Sbjct: 373 -IPDLINKGIKADVVVVDPPRKGCEKSLLEAIAATRPKRIVYVSCDPGTLARDLGILNGL 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +  + +   D FP T H+E  VLL RK
Sbjct: 432 GYETKEVQPVDMFPQTSHVETCVLLQRK 459


>gi|269941368|emb|CBI49765.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 453

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 72/388 (18%), Positives = 149/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + ++  +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKI 160
            +  Y T +     VT        +A  E  +     + + K  I      +    ++  
Sbjct: 202 VRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSIT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D + ++LT +     ++  + SF Q N+     +    +   +    ++ L+ YCG
Sbjct: 262 LYGKDTIIDQLTDS----TFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   ++E A+ N   N  N+   V   ++E     +     
Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNHTTFVCGKAEEVILQWKA---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+E   L   K
Sbjct: 426 KYQLEEVTPVDMFPQTTHVETVALFNLK 453


>gi|315145231|gb|EFT89247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2141]
 gi|315161930|gb|EFU05947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0645]
          Length = 468

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 103 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 162

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 163 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNSGNLRHIVVRRGYHTGE 222

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 223 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 278

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 279 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLNLA 338

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 339 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 386

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 387 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 446

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 447 PVDNFPQTTHIESVTLLTK 465


>gi|315157726|gb|EFU01743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0312]
          Length = 504

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 149/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 199 KNSHDLISMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 314

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +   
Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEK 422

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 483 PVDNFPQTTHIESVTLLTK 501


>gi|163816191|ref|ZP_02207559.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759]
 gi|158448611|gb|EDP25606.1| hypothetical protein COPEUT_02375 [Coprococcus eutactus ATCC 27759]
          Length = 495

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 156/394 (39%), Gaps = 45/394 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDL 58
            G   +D  YEQQLAEK   +  ++  F   +  I    P HYR +  A F       ++
Sbjct: 117 GGCQYVDMPYEQQLAEKQKYIDDLLSVFGPVDKIIGMENPYHYRNKVTAAFR-RMKSGEI 175

Query: 59  YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQI 107
              ++++ T   + ++                  LI +  +++        L+R    ++
Sbjct: 176 ISGVYEEGTHNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDTGTGLIRHLQIRV 235

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKI 160
              T Q    IVT      +  + +  A  L  A       +Q I          ++ ++
Sbjct: 236 GRKTGQIMVIIVTA---SPVFPSKKNLAKALVTAHPEITTVVQNINMKDTSMVIGDRNQV 292

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
              + Y+++ L        +R    SF Q N      +    +  A    +  +++ YCG
Sbjct: 293 VYGKGYIEDILCGK----RFRISPGSFYQVNPEQTEVLYGKAIKYADLKKKETVIDAYCG 348

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   +  +    +V+ VE+ + +V  AR N+  N + NV I    +  F          
Sbjct: 349 IGTIGIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRF---------- 398

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST 337
             + D+         +F+DPPRSG  +  +   +      ++YISC P+SL RDL  ++ 
Sbjct: 399 --MVDVADEGDSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTK 456

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
             + + R+   D FP TR +E  VLL R  +G H
Sbjct: 457 HGYQVIRMTPVDMFPLTRGVETVVLLTRAGAGQH 490


>gi|153940444|ref|YP_001392724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. Langeland]
 gi|152936340|gb|ABS41838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. Langeland]
 gi|295320705|gb|ADG01083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. 230613]
          Length = 461

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 145/388 (37%), Gaps = 37/388 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              +    Y+ QL  K  R+   +      ++        I    P  YR + +  +  +
Sbjct: 85  GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107
             ++    +  +T E   +               +I   M++   +   E   +  +  I
Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204

Query: 108 DYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
               +  ++ ++ +I     ++     E    +       K  IQ I    KT + L   
Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFSNIKSIIQNINT-KKTNVILGEK 263

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               +  + +T       +     SF Q N      + +  L        + + + YCG 
Sbjct: 264 CITLWGKDIITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E            
Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV----------- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337
            + D+     +   + VDPPR G +   +  + A     I+Y+SC+P +L RDL IL+  
Sbjct: 373 -IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDLGILNEL 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +  + +   D FP T H+E  VLL RK
Sbjct: 432 GYETKEVQPVDMFPQTSHVETCVLLQRK 459


>gi|16077869|ref|NP_388683.1| RNA methyltransferase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221308637|ref|ZP_03590484.1| hypothetical protein Bsubs1_04463 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312961|ref|ZP_03594766.1| hypothetical protein BsubsN3_04414 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317887|ref|ZP_03599181.1| hypothetical protein BsubsJ_04358 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322160|ref|ZP_03603454.1| hypothetical protein BsubsS_04454 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321314530|ref|YP_004206817.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
 gi|50401310|sp|O31545|YFJO_BACSU RecName: Full=Uncharacterized RNA methyltransferase yfjO
 gi|2633126|emb|CAB12631.1| putative RNA methyltransferase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|2780399|dbj|BAA24300.1| YfjO [Bacillus subtilis]
 gi|291483243|dbj|BAI84318.1| hypothetical protein BSNT_01338 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020804|gb|ADV95790.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
          Length = 466

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 155/395 (39%), Gaps = 48/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQI----FRSEPIHYRMRAEFHIWH- 53
              L    Y QQL EK D + Q +     F+V N++I        P +YR +++F I   
Sbjct: 90  GCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNKSQFQIGRS 149

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRA 102
               +   ++   + + + I   +      N              + +    + +  +R 
Sbjct: 150 QSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRT 209

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RA 155
            + ++ +   ++ +  V L+  +       E    ++  L   K  IQ +          
Sbjct: 210 IVTRVGF---ETGEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQNVNGAKTSVIFG 266

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214
            KTK    +  + E L      + +     +F Q N    V + + V  AA    +  ++
Sbjct: 267 EKTKQLAGKTVIQEVLG----DVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVV 322

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G   + +A     V  +++ K S++ A+ N   + + N   V  +++ +     
Sbjct: 323 DAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWLPKWT 382

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
           +E             +R   + VDPPR+G D   +  ++       +Y+SCNP +L +DL
Sbjct: 383 KE------------GFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDL 430

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             LS  + ++ +   D FP T H+E    LV K S
Sbjct: 431 QTLSKDYRVDYIQPVDMFPQTAHVEAVARLVLKSS 465


>gi|315641196|ref|ZP_07896273.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
           15952]
 gi|315482963|gb|EFU73482.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
           15952]
          Length = 458

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 148/394 (37%), Gaps = 49/394 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y +QL  K D L+Q +  F+    Q       I   +P HYR +A+F + + 
Sbjct: 84  GCQLQHLSYNKQLVFKRDLLKQALQKFKPKGYQEFDLRPTIGMDDPWHYRNKAQFQLRYS 143

Query: 55  GDDLY--HIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                    ++   + E + ID  +               L+N   + +    +   + R
Sbjct: 144 NKRQRIEAGLYRPNSHELVPIDDCLVQEPQTQQVLNTTVQLLNKYNVPVYDEKKNSGIFR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------R 154
             + +I  +T++     +T         + +     L   L      +Q I         
Sbjct: 204 TLMVRIGVITNELQLVFITNSEK---FPSKQALIRELTTRLPNVVSIMQNIQNKKTSLVM 260

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213
             KT     +D ++E++      + +     +F Q N      + +  + A      D +
Sbjct: 261 GEKTVNLWGKDTIEEQI----NEVTFDLSARAFFQLNPYQTSVLYQEAIRALDYQSSDTV 316

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ YCG G   L +A    +V  ++    ++  A+ N     + N      ++++     
Sbjct: 317 IDAYCGVGTIGLSVAPFVKQVRGMDTISQAITDAKKNAQRKGLTNTHYETGTAEDLIPKW 376

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
            ++             Y    I VDPPR+GLDD  +  +  +P   ++Y+SCN  +L RD
Sbjct: 377 VKD------------GYHADAIVVDPPRTGLDDKLLQTLLRHPSKRLVYVSCNVSTLARD 424

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L  L+  + ++ L   D FP T   E  V L +K
Sbjct: 425 LVQLAKVYRVDYLQSVDMFPQTARCEVVVKLTKK 458


>gi|290968456|ref|ZP_06559995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781452|gb|EFD94041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 460

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 150/387 (38%), Gaps = 41/387 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
             L    Y+ +L EK  +++  +              +  + P +YR + +F +  D  +
Sbjct: 88  CQLQHFSYDGELQEKQRQVQDALTRIGHITNVPVLPTLGAATPWNYRNKMQFPVGEDKKN 147

Query: 58  LY-HIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLF 105
                 F   T   + ++  +      N +            I      +   ++R  + 
Sbjct: 148 TLSIGCFAAATHNVINVENCVIQKEENNQIVRIVRQWMKDFKIPAYDEDKCTGMIRHIMG 207

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           ++   T +    IVT           ++   RLR  +      IQ I   + T + L R 
Sbjct: 208 RVGVKTGEIMVCIVTACECIP---HIKDLIRRLRQEIPGLTAVIQNINTGH-TNVILGRK 263

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220
               Y  + +  A   L +     SF Q N+     + E  +        +++ ++YCG 
Sbjct: 264 TRTLYGQDTIHDAIGNLRFHISAQSFFQVNSEQAQRLYEKAMEFADLKGNEIVADVYCGT 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +L LA+   +V  +EI   +++ A  N   NH+ N + +   +              
Sbjct: 324 GTITLFLAQKAKQVYGIEIVPSAIKDAIRNARDNHIKNAEFILGDA------------VY 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
           +L ++  +  R + I +DPPR+G  +  +  +       ++Y+SCNP +L RDL+ L T 
Sbjct: 372 KLPELIKNGVRPQVIVLDPPRAGCGEPVLRAIGRSQPERVVYVSCNPATLARDLACLQTY 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  ER+   D F  T H+E   L+ R
Sbjct: 432 GYKTERVQPVDMFSRTHHVESVALVSR 458


>gi|260899154|ref|ZP_05907549.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ4037]
 gi|308107497|gb|EFO45037.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus AQ4037]
          Length = 229

 Score =  283 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 140/228 (61%), Positives = 174/228 (76%), Gaps = 2/228 (0%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             L+   + + +IGRA K KI LDRDYV E+L V G++ IY+Q+ENSFTQPN  +   ML
Sbjct: 1   QRLNDEGFNLNIIGRARKMKIILDRDYVIEKLDVNGQSYIYQQVENSFTQPNGKVAEKML 60

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           EW +  T+   GDLLELYCGNGNFSL LA++FDRVLA E+AKPSVE+A+YNIAAN ++NV
Sbjct: 61  EWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVESAQYNIAANKIDNV 120

Query: 260 KIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +I+RMS++EFT+AM  +REF RLKD  +D+ SY   TIFVDPPR+G+D  T  MVQ Y  
Sbjct: 121 QIIRMSAEEFTEAMEGKREFRRLKDNGVDLKSYNCNTIFVDPPRAGMDVDTCKMVQGYER 180

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           I+YISCNP++L  +L ILS TH + R ALFDQFPYT HME GVLL RK
Sbjct: 181 IMYISCNPETLKENLDILSETHNVTRFALFDQFPYTHHMEAGVLLERK 228


>gi|157691537|ref|YP_001485999.1| tRNA (uracil-5-)-methyltransferase [Bacillus pumilus SAFR-032]
 gi|157680295|gb|ABV61439.1| tRNA (uracil-5-)-methyltransferase [Bacillus pumilus SAFR-032]
          Length = 461

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 157/390 (40%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    YEQQL EK D + Q M      +++       I   +P HYR +++F +   
Sbjct: 88  GCQLQHLAYEQQLREKRDIVIQSMERHTKLSVEKLDIRPTIGMEDPWHYRNKSQFQVGRS 147

Query: 55  -GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRA 102
              D+   ++   + + + I   +      N              + +      +  +R+
Sbjct: 148 HSGDIIAGLYGLNSHKLVPIKECIVQHPKTNKTTGVVRKILEKFGVSVYNERTRKGDVRS 207

Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            + ++ + T +    +VT        + + DA ++    +   +H    +   +   +KT
Sbjct: 208 IVVRVGFETGEVQVVLVTSKPEFPKKKEIADAIQKRLPEVTSIMHNINGEKTSVIFGHKT 267

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217
                   + E L      + +     +F Q N    + + +    AA    +  +++ Y
Sbjct: 268 SHLAGNMVIQEFLG----DVSFELSARAFFQLNPKQTLKLYDEAKKAAKLTGKEKVVDAY 323

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   + L+     V  +++ K S++ A+ N   + + N   V  +++ +     +E 
Sbjct: 324 CGVGTIGMWLSDGAKEVRGMDVIKESIDDAKKNAKKHGMKNATYVTGTAEHWLPKWVKE- 382

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                       +R   I VDPPR+G +   +  V+      ++Y+SCNP +L +DL  +
Sbjct: 383 -----------GFRPDVIVVDPPRTGCERTFLDTVKQVKPKRLVYVSCNPSTLAKDLEYI 431

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + IE +   D FP+T H+E  V LV+K
Sbjct: 432 SKDYKIEYMQPVDMFPHTSHVETVVSLVKK 461


>gi|229824364|ref|ZP_04450433.1| hypothetical protein GCWU000282_01685 [Catonella morbi ATCC 51271]
 gi|229786164|gb|EEP22278.1| hypothetical protein GCWU000282_01685 [Catonella morbi ATCC 51271]
          Length = 499

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 151/387 (39%), Gaps = 41/387 (10%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
           TL    Y  QL  K   ++Q+         +L++        P  YR +A+  +      
Sbjct: 128 TLQHMAYPAQLKAKQALVKQVFSRLGKFPESLEVRPTYGMDHPWQYRNKAQIPVRTVKGQ 187

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMI-------EMMATIRLEPLLRAKLFQIDYL 110
           L    F + + + + ++ F      I+  ++       ++  +   E   + ++  I   
Sbjct: 188 LETGFFRKNSHQLVPVENFHIQDPAIDQAILVTRDILRQLGYSAYDEESRKGQIRHIIVK 247

Query: 111 TSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKY-------QIQLIGRANKTKICL 162
               S Q ++ L+ +     A  +    L  A+            Q   +      ++  
Sbjct: 248 RGHYSGQVMLILVVNGKGLPAEDKLIKALTKAIPNLVSLVLNSHTQANNVIMGPTNRLLW 307

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNG 221
            +    +++      L +    +SF Q N      +  + L AA       +L+ YCG G
Sbjct: 308 GQPVYQDQML----GLDFSISPHSFYQVNTPQAEALYRYALEAADLSGSETVLDAYCGIG 363

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LAR   +V A+EI   +++ AR N  AN ++NV      ++E   A + E     
Sbjct: 364 TISLALARQAGQVYAMEIVPEAIDMARANAEANGLSNVTFQAGKAEEVLPAWQAE----- 418

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TT 338
                     F    VDPPR GLD   V  +   A   I+Y+SCNP +  RD  +L+   
Sbjct: 419 -------GIHFDVAVVDPPRKGLDPEFVKTLIELAPDKIVYVSCNPATCARDCQLLAQAG 471

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP T H+E   LL RK
Sbjct: 472 YELQWVQPVDLFPKTAHIEVVGLLERK 498


>gi|315638470|ref|ZP_07893647.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis JV21]
 gi|315481461|gb|EFU72088.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis JV21]
          Length = 354

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 127/352 (36%), Positives = 203/352 (57%), Gaps = 11/352 (3%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRI 73
            +K+   +++   F     ++F S   H+R R E   +H +  ++++ MFD + K  +  
Sbjct: 6   EQKILEAKELFKPFYKGEFELFSSPTSHFRTRVELSFFHSENGEIFYAMFDGRKKYIVEN 65

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
             F+     I  LM +++  +  +  L+ KLF +++L S+ + + VTL+YH+ +      
Sbjct: 66  LDFV--DEKICLLMPKLLKALNDDNTLKNKLFGVEFLASKKELS-VTLLYHKDISTLKEN 122

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
            A        AR   + LI R+   K+   ++ + + L + G  + Y    + F QPN  
Sbjct: 123 LANL------ARNLNLNLIARSKGKKLVFGKENLRQVLDIKGEAIHYEFDNDCFIQPNTY 176

Query: 194 INVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+EWVL     G + DLLELYCG GNF+L LA  F ++LA E++K ++  A  N  
Sbjct: 177 INEKMIEWVLKQISTGEKNDLLELYCGYGNFTLALASSFKQILATELSKKNIAYALKNCT 236

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N+   R+SS+E ++A+++EREF RLKDID+ S+ F  I +DPPR+GL+++ + + 
Sbjct: 237 LNNATNIHFARLSSEELSKALKKEREFFRLKDIDLDSFHFSHILLDPPRAGLEESVIELA 296

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           Q Y HI+YISCNP SL  +L+ L+ THTI   ALFDQF  T H+E GV+L +
Sbjct: 297 QNYHHIIYISCNPTSLKENLTKLTKTHTITNFALFDQFALTPHLESGVILKK 348


>gi|297531277|ref|YP_003672552.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
 gi|297254529|gb|ADI27975.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
          Length = 467

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 142/386 (36%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53
              L    YE QL  K D + Q +                 I    P HYR +++F +  
Sbjct: 93  GCQLQHLSYEAQLEAKRDIVIQALRRHARRLDVDKLDIRPTIGMDNPWHYRNKSQFQVGM 152

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
               +   ++   +   + +                   ++  L I +        ++R 
Sbjct: 153 KEGKVLAGLYGINSHRLIDLSECRVQHPQTTRVTNIVKTILQDLRIPIYNERTRTGVVRT 212

Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            + ++ + T      +VT    +   +LL D  R     ++  +     +   +   ++T
Sbjct: 213 IVVRVGFHTGDIQLVLVTATKDIPRKQLLIDEIRRRLPEVKSIVQNINGEKTSLIFGDET 272

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217
           ++    +Y+ E L      L +     +F Q N    V + + V  AA       +++ Y
Sbjct: 273 EVLAGDEYIQETLG----DLSFELSSRAFFQLNPLQTVKLYDEVKKAAALTGTERIVDAY 328

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L LAR    V  ++    ++E A+ N   +   N   V   ++          
Sbjct: 329 CGVGTIGLWLARDAKEVRGMDTIPEAIEDAQNNAKKHGFTNTHYVVGKAE---------- 378

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
               L       ++   I VDPPR G D A +  +       ++Y+SCNP SL RDL  L
Sbjct: 379 --YWLPKWVKGGWKPDVIIVDPPRVGCDRALLETILHVRPKTVVYVSCNPSSLARDLDAL 436

Query: 336 STTHTIERLALFDQFPYTRHMECGVL 361
           +  + ++ +   D FP+T H+EC   
Sbjct: 437 AAQYRVDYIQPVDMFPHTAHVECVAK 462


>gi|258646651|ref|ZP_05734120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister invisus DSM
           15470]
 gi|260404073|gb|EEW97620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister invisus DSM
           15470]
          Length = 468

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 136/382 (35%), Gaps = 31/382 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  R++ ++        ++    +    P  YR +          
Sbjct: 96  GCQLSHLTYEGQLDMKYRRVKDVIERIAGESGKLVRPVLPAVHPFAYRNKMAVPAGLVKG 155

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMI-------EMMATIRLEPLLRAKLFQIDY 109
           +     + Q + + + +          N L+        +   ++  E   +  L  +  
Sbjct: 156 EAALGCYRQGSHDIIPVSSCAIQKEENNRLLQFARRFIEKYGISVYDEKTRKGSLRHVMG 215

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---Y 166
                 + +V L+         +     ++  L         I       I   +    +
Sbjct: 216 RVGDDGKVMVVLVTASETLPEEKRWIEGIQKELPEVISLWHNIQPKPGNTILGAKIRHLW 275

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             E LT +   L +     SF Q +      + E  L       G+ +++ YCG G  SL
Sbjct: 276 GRETLTASLCGLQFEVSPYSFFQVHKEQAEILYEKALEYADLKGGETVIDAYCGTGTISL 335

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA+   RV+ +EI KP++E A+ N   NH+ N +     + +    + R          
Sbjct: 336 CLAKKAKRVIGIEIVKPAIEDAKKNAKKNHMENTEFYAADAGKLMPQLYR---------- 385

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIE 342
                    I +DP R+G  +  +          I+Y+SCNP +  RD  IL S  + I+
Sbjct: 386 --QGLVPDVIVMDPVRAGCSEEVLKAAAGMNPKRIVYVSCNPATFARDAKILKSEGYEIK 443

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +   D FP T H+E  VL+ R
Sbjct: 444 EVQPVDMFPQTMHVETVVLMSR 465


>gi|289449975|ref|YP_003474465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184522|gb|ADC90947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 458

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 144/387 (37%), Gaps = 44/387 (11%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGD 56
            L    Y+ QL  K D++R+ +  F  P L        +   EP HYR +A   I     
Sbjct: 88  ALAHLNYQYQLTFKQDQVRRTLGKF--PELRDISVRDTLGMEEPWHYRNKALVPIAGKIG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109
            L    + Q + + + +  +     +I+  +  ++  I         E   R  L  I  
Sbjct: 146 HLCSGFYRQNSHKFIPVADYKIQLPIIDRTIQTVLQVINRHGWTAYDEKTGRGLLRHIGV 205

Query: 110 LTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-------RKYQIQLIGRANKTKIC 161
                + + +V  + +  +     +    +  A+         +  Q   +   +++++ 
Sbjct: 206 RVGFHTGEIMVIFVVNGAILPEEIDVTQEIVSAIPNLTGLIMNKNCQATNVILGHESRVL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              D   E +      L +     SF Q N      + + VL  A       +++ YCG 
Sbjct: 266 YGCDCYRETIG----GLTFMVSWQSFLQVNTLQAEKLYQTVLEVAGLSGNETVIDAYCGI 321

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LAR    V  VEI   ++E A  N   N ++N   V   ++        E    
Sbjct: 322 GTISLYLARRAKFVYGVEIVPAAIEMAERNAEVNGIHNASFVCGKAETVIPQWVAE---- 377

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILST 337
                         + VDPPR GL    +  +       I+Y+SCNP +L RD++ +L  
Sbjct: 378 --------GLAPDVVVVDPPRKGLATEVIEALSTVRPAKIVYVSCNPATLARDMALLLKA 429

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +    +   D FP T H+E  VL+ R
Sbjct: 430 GYHAGDVQPVDMFPQTPHVESVVLMSR 456


>gi|266619611|ref|ZP_06112546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
 gi|288868833|gb|EFD01132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
          Length = 458

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 89/389 (22%), Positives = 146/389 (37%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQI-FRSEPIHYRMRAEFHIWHDGD 56
              L    YE+QL  K  ++   +        VP L +    EP  YR +A+F    D D
Sbjct: 84  GCQLQAMDYEEQLKYKERKIYNNIKRIGGFDEVPMLPVMGMEEPWRYRNKAQFPWGTDKD 143

Query: 57  -DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
             +    F  +T   +  +  + G              +    I          L+R  L
Sbjct: 144 GKIITGFFAGRTHAIIENEDCLLGIEENREILKIIKNHLERYHIRPYDEASHSGLIRHTL 203

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  + T +     V         +   E  +++          I +     +T + L  
Sbjct: 204 IRKGFHTGELMVCQVINGKSLPHQEELTEQLLKVPGM-----TSISVNINREQTNVILGN 258

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
                Y    +T     + YR    SF Q N      +    L       G+ + +LYCG
Sbjct: 259 QVINLYGPGYITDYIGGVKYRISPLSFYQVNPVQTEKLYSTALEYAGLTGGETVWDLYCG 318

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  VEI   +++ AR N   N + NV+     ++E      RE E 
Sbjct: 319 IGTISLFLAQKAKKVYGVEIVPQAIDDARENARINGMENVEFFVGKAEEVLP---REYEK 375

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
           N++            I VDPPR G D+  +  +       ++Y+SC+  +L RD+  L+ 
Sbjct: 376 NQVYA--------DVIVVDPPRKGCDEVCLDTIVKMGPKRVVYVSCDSATLARDMKYLAE 427

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVRK 365
             + + ++   D FP++ H EC V L RK
Sbjct: 428 RGYEVVKVRGCDMFPHSTHTECCVKLERK 456


>gi|315645285|ref|ZP_07898410.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
           V453]
 gi|315279327|gb|EFU42633.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
           V453]
          Length = 502

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 140/412 (33%), Gaps = 65/412 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------------------------------VP 31
              L    Y  QL  K   +   +                                  + 
Sbjct: 106 GCQLQHMSYAGQLEWKRQLVVDNLERIGKLRVVREAAGAGETRVEDGQDTGNSDREGILV 165

Query: 32  NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA------ 85
              +  SEP  YR +++  I      L    + + +   + ++  +      +       
Sbjct: 166 RPTLGMSEPWRYRNKSQVPIGVTEGGLVGGFYARGSHRIVDMETCLIQHEQNDEVVSRVK 225

Query: 86  -----LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD 140
                L I        + LLR  + +I + T +    +VT        + W      +R+
Sbjct: 226 AIGRKLGITAYNEETGQGLLRHVVVKIGFATREMMIVLVTNGERIPCVNEW---ISAIRE 282

Query: 141 ALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L A     Q +    KT +         +  E +      + +     SF Q N     
Sbjct: 283 ELPAVVSVCQNVNT-RKTNVIFGDVTRVLWGREVIHDYIGDVKFAISARSFYQVNPAQTE 341

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +    +        + +++ YCG G  SL LA+H  +V  VEI K ++E AR N   N 
Sbjct: 342 VLYGKTVEYAGLTGAETVIDAYCGIGTISLFLAQHAKKVYGVEIVKEAIEDARANAELNG 401

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + +V+    +S++     +                    I VDPPR G D   +  +   
Sbjct: 402 MKHVEFEVGASEDVIPRWKE------------QGIEADVIVVDPPRKGCDPRLLETILEM 449

Query: 316 P--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
               ++Y+SCNP +L RDL +L    +    +   D FP+T H+E   +L+R
Sbjct: 450 KPERVVYVSCNPSTLARDLRVLKDGGYRTVEVTPVDMFPHTVHVESVAVLMR 501


>gi|228478261|ref|ZP_04062869.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
 gi|228249940|gb|EEK09210.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
          Length = 452

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 153/384 (39%), Gaps = 40/384 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61
              YE+QL  K  ++   +     + ++++        P  YR +A+  +      L   
Sbjct: 85  HMTYEEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETG 144

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110
            + + + + + I+ F+     I+ L++   +++    L+P        L+R  + +  + 
Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166
           + Q     VT    R       +   ++ +A       IQ I   N T     +D    Y
Sbjct: 205 SGQIMLVFVT---TRPKIFRIDQIIAKITEAFPNIVSIIQNINDKN-TNAIFGKDFRTLY 260

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225
             + +T +     Y     SF Q N  +   + +  +  +       +++ Y G G   L
Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A+    V  VE+ + +VE A+ N   N + N   V  S++       ++         
Sbjct: 321 SFAKQVKEVYGVEVIETAVEDAKKNADRNGITNAHYVADSAENAMAKWSKD--------- 371

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342
                +   I VDPPR GL ++ +   V   P  I Y+SCNP ++ RD+ +     + ++
Sbjct: 372 ---GIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKLYQELGYELK 428

Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366
           ++   D FP T H+EC  LL ++ 
Sbjct: 429 KVQPVDLFPQTHHVECVCLLEKRN 452


>gi|291541326|emb|CBL14437.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 621

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 159/392 (40%), Gaps = 43/392 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAE--FHIWHDGDDLYHIMFDQQ 66
            YE+QL EK + +R+ +  F      I    P HYR +    F I   G  +   ++   
Sbjct: 135 PYEKQLKEKQEYVRKNVGEFCKVLPIIGMEHPYHYRNKVHAVFDIA-KGGSVISGVYKAG 193

Query: 67  TKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           T + + ID                  L+ +  I+         LLR  L +  +    S 
Sbjct: 194 THDVVNIDSCRIEDETADAIIRDIRGLLRSFKIKTYDEDTGYGLLRHVLVRRGF---HSG 250

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--------ICLDRDYV 167
           + +V L+    +  +       LR  LH     + L     KT         +   + Y+
Sbjct: 251 EVMVVLVLGSPILPSKNNFVKALR-KLHPEITTVVLNVNDKKTSMILGEKETVIYGKGYI 309

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226
           ++ L        +R    SF Q N      +    +  A    +  +++ YCG G   L+
Sbjct: 310 EDTLC----GCTFRISPKSFYQVNPVQTEILYTKAIEYAGLTGKERIVDAYCGIGTIGLI 365

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM---RREREFNRLK 283
            A     V++VE+ + +V  A  N   N + NV+     + +F   M   R +++ N++ 
Sbjct: 366 AASKAKEVISVELNRDAVRDAVTNAKRNDIKNVQFYNADAGQFMVEMAEYRADQKKNQVP 425

Query: 284 DIDIHSYRF------KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
           D      +         +F+DPPR+G D+A +  V   A   ++YISCNP++L RDL  L
Sbjct: 426 DATKSGKKATPDGNVDVVFMDPPRAGSDEAFLSSVIRLAPKRVVYISCNPETLARDLKYL 485

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
           +   +  +     D FP+T+H+E  VLL  K 
Sbjct: 486 TKHGYQAKECQPVDLFPWTKHVETVVLLSHKK 517


>gi|227517694|ref|ZP_03947743.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX0104]
 gi|227074849|gb|EEI12812.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
           faecalis TX0104]
          Length = 504

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F    L I+A ++++   +R               LR  + +  Y T +
Sbjct: 199 KNSHDLIPMEHFYIQDLEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGNETILLHGSE 314

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           + T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 315 KNTDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 483 PVDNFPQTTHIESVTLLTK 501


>gi|160914430|ref|ZP_02076645.1| hypothetical protein EUBDOL_00434 [Eubacterium dolichum DSM 3991]
 gi|158433588|gb|EDP11877.1| hypothetical protein EUBDOL_00434 [Eubacterium dolichum DSM 3991]
          Length = 455

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 153/379 (40%), Gaps = 31/379 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L    Y +QL  K  ++  +M      +++    I    P  YR + +  +      
Sbjct: 93  GCQLQHVSYAEQLRFKKQKVIDVMKRIAQIDVEVLDVIGMENPTFYRNKGQIPVGITNKQ 152

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINA---LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           +    +   +   + ++  M  S  IN     M +++   +   L R  L +  + +   
Sbjct: 153 VVTGFYRINSNTIIDMNSCMIQSKRINEVLVCMKKLLNKYQNADLFRHLLIKDAFASG-- 210

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDER 170
            + +V  I          E    L + L   K  I  +    +  + L ++    Y +  
Sbjct: 211 -EVMVVWIVRSSKLSHKEEMCKELVENLPYIKSVIINVNT-REDNVILGKEEHVLYGNSY 268

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR 229
           +T A   L +     SF Q N      +    L  A    + ++++LYCG G  S+ LA+
Sbjct: 269 ITDAIHDLNFHISSRSFYQVNPVQTERLYGKALEFAQLSGKEEVIDLYCGVGTISMFLAQ 328

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VEI   ++  A+ N   N ++N+  V   +  + + + +              
Sbjct: 329 KAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAKKLEK------------QG 376

Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLAL 346
            +   + VDPPR G DD T+  +V+  P  I+Y+SC+P +L RD+  L    +  + +  
Sbjct: 377 KKPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQVVQP 436

Query: 347 FDQFPYTRHMECGVLLVRK 365
            D FP++ H+E  VLL ++
Sbjct: 437 VDMFPFSFHVESIVLLQKR 455


>gi|257080993|ref|ZP_05575354.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
 gi|256989023|gb|EEU76325.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
          Length = 457

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 92  YGAQLSFKTQQVENVMQRVAKLPEVPVLPTIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRRYSVKPYNESDNTGNLRHIVVRRGYHTGE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  E
Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSE 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   ++  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 328 QDAKQIYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 436 PVDNFPQTTHIESVTLLTK 454


>gi|315025773|gb|EFT37705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX2137]
          Length = 504

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 139 YGAQLSFKTQQVENVMQRVAKLPEVPVLPIIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 198

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 199 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 258

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  +
Sbjct: 259 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSK 314

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 315 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 374

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 375 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 422

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 423 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 482

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 483 PVDNFPQTTHIESVTLLTK 501


>gi|260893156|ref|YP_003239253.1| RNA methyltransferase, TrmA family [Ammonifex degensii KC4]
 gi|260865297|gb|ACX52403.1| RNA methyltransferase, TrmA family [Ammonifex degensii KC4]
          Length = 436

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 31/376 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56
              LL   YE QL  K   +  ++L             +    P HYR +   H+  +G 
Sbjct: 79  GCQLLHLDYEHQLHFKNKVVENVLLRLGKLTEVEVKPILGMENPWHYRNKVRLHVAWEGR 138

Query: 57  DLYHIMFDQQTK---ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID-YLTS 112
                ++   +     R+           +NAL   +   I+    + A L  +   L +
Sbjct: 139 KPVLGLYAPSSHVIGHRIDRSPCYILDGQLNALARVLAGLIKKHAEMLAGLTAVSLRLAA 198

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
            + + +V L         W+     L  A+      +  +G   K ++     ++ + L 
Sbjct: 199 ATGETMVVLEGASEHYSRWKRLVDELTAAVP--VTTVVRVGARGKEEVLYGEGHITDSL- 255

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231
                L +R    SF Q N      +   VL  A+   +  +++ YCG G  +L LAR  
Sbjct: 256 ---DGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGRERVIDAYCGVGTITLFLARKA 312

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V+ +EI+  +V  A  N A N +++V  V+ +++E             L ++      
Sbjct: 313 AQVIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEV------------LPELLAREGM 360

Query: 292 FKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348
           F  + +DPPR G+  A +  +     P ++Y+SCNP +L RDL  LS   + ++ +   D
Sbjct: 361 FDLVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATLARDLGFLSAQGYRVQEVQPVD 420

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+EC   L R
Sbjct: 421 MFPHTYHVECVAYLCR 436


>gi|194018043|ref|ZP_03056649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
           7061]
 gi|194010288|gb|EDW19864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
           7061]
          Length = 461

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 157/390 (40%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    YEQQL EK D + Q M      +++       I   +P HYR +++F +   
Sbjct: 88  GCQLQHLAYEQQLKEKRDIVIQSMERHTKISVEKLDIRPTIGMEDPWHYRNKSQFQVGRS 147

Query: 55  -GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRA 102
              D+   ++   + + + I   +      N              + +      +  +R+
Sbjct: 148 HSGDIIAGLYGLNSHKLVPIKECIVQHPKTNKTTGVVRKILEKFGVSVYNERTRKGDVRS 207

Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            + ++ + T +    +VT        + + +A ++    +   +H    +   +   +KT
Sbjct: 208 IVVRVGFETGEVQVVLVTSKPEFPKKKEIAEAIQKRLPEVTSIMHNINGEKTSVIFGHKT 267

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217
                   + E L      + +     +F Q N    + + +    AA    +  +++ Y
Sbjct: 268 SHLAGNMVIQEFLG----DVSFELSARAFFQLNPKQTLKLYDEAKKAAKLTGKEKIVDAY 323

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   + L+     V  +++ K S++ A+ N   + + N   V  +++ +     +E 
Sbjct: 324 CGVGTIGMWLSDGAKEVRGMDVIKESIDDAKKNAKKHGMKNATYVTGTAEHWLPKWVKE- 382

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                       +R   I VDPPR+G +   +  V+      ++Y+SCNP +L +DL  +
Sbjct: 383 -----------GFRPDVIVVDPPRTGCERTFLDTVKQVKPKRLVYVSCNPSTLAKDLEYI 431

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + IE +   D FP+T H+E  V LV+K
Sbjct: 432 SKDYKIEYMQPVDMFPHTAHVETVVSLVKK 461


>gi|168333730|ref|ZP_02691983.1| RNA methyltransferase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 446

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 155/387 (40%), Gaps = 46/387 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56
                  +YE QL  K  +++  +              I    PIHYR +A++ I     
Sbjct: 79  GCVAQHIKYEFQLKYKQKQVKDCLERIGKIREVEVLPTIAMENPIHYRNKAQYPIREVDG 138

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL-------INALMIEMMATIRLEPLLRAKLFQIDY 109
            +    +  ++ + + I+  + G+         I     +   +I  E   +     +  
Sbjct: 139 KIQIGFYAAKSHQVVDIEDCVIGNQKNGAIVDAIRKFXKDXKISIYNEATHKGLARHLVI 198

Query: 110 LTSQS-DQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRANKTKICL 162
             S + D+A+V L+ +       ++   RLR        L         +  A +T    
Sbjct: 199 RNSINFDEAMVCLVINGKKLPHAQDLVERLRAIPGITGILLNHNTAKGNVILAEQTTTLD 258

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGN 220
            RDY+ +++      L ++    SF Q N  +   +L  +      + G   +L+ YCG 
Sbjct: 259 GRDYIMDKIG----ELTFKISLLSFFQVNP-VQTKVLYDIALGVAALTGSETVLDAYCGI 313

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+   RV+ VE    +V  A  N   N + NV+ V  ++++            
Sbjct: 314 GTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDV----------- 362

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-ST 337
                 +   +F  + VDPPR G ++  +  +   A   ++YISC+P +L RD+  +   
Sbjct: 363 ------VLGEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYEN 416

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + + ++   D FPYT H+E  VLL R
Sbjct: 417 GYVVNKVQPVDMFPYTSHVETCVLLSR 443


>gi|323489776|ref|ZP_08095001.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
 gi|323396514|gb|EGA89335.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
          Length = 453

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 144/390 (36%), Gaps = 48/390 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
              +    YE Q+  K   +R  +     +P++ +       +P  YR +++        
Sbjct: 82  GCQIQHLSYEGQMTFKQKLVRDAITRIGKLPDVPVHPVKGMEDPWRYRNKSQIPFGTQDG 141

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
            +    +  ++ +    D  +  +   +A+M+ +                   +LR  + 
Sbjct: 142 KVVAGFYQPRSHDIADTDTCLIQTPEADAIMVALKKSLIDMGIDPYEEATHRGMLRHVVV 201

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +    T    + +V L+  +      +     ++  +      +Q I    KT +     
Sbjct: 202 RKARATG---EIMVVLVTKKKKFPQAQRAIELIQATVPEVTSIVQNINP-EKTNVIFG-- 255

Query: 166 YVDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLEL 216
             DE LT+ G+ +I        +     SF Q N      +    LA A    +  +++ 
Sbjct: 256 --DETLTLWGKDVIEDRIGDVRFEISARSFYQINPVQTEVLYGQALAYAQLTGEETVIDA 313

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  SL LA+    V+ VEI   ++E A+ N   N + N       +++      +E
Sbjct: 314 YCGIGTISLFLAQRAKFVMGVEIVPQAIEDAKRNAELNGLTNTLFEAGPAEQVIPRWYKE 373

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                         +   + VDPPR G D+  +  +       ++Y+SCNP +L RDL I
Sbjct: 374 ------------GKKADVLVVDPPRKGCDEQLLHTILKQRPTRVVYVSCNPATLARDLRI 421

Query: 335 LS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           L    +  + +   D FP + H E    L 
Sbjct: 422 LEDGGYRTKEVQPVDMFPQSTHCEAVAWLE 451


>gi|261405173|ref|YP_003241414.1| TrmA family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261281636|gb|ACX63607.1| RNA methyltransferase, TrmA family [Paenibacillus sp. Y412MC10]
          Length = 532

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 139/388 (35%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              +    YE QL  K D +R+    +   +       +    P  YR +A+  +   G 
Sbjct: 160 GCQIQHISYEGQLQAKTDIVREAFSRYVGLDDVKFKPILGMEHPWDYRNKAQLQLKRKGH 219

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105
           ++   +++  +   + I         +N            L I +      +  +R  + 
Sbjct: 220 EVIAGLYEADSHTIVDISGCPIQHPKVNETVEKVKSVLEELRIPLYKENGAKDGVRTIVV 279

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +  +   QS +  VTLI          +    LR  +      I L     KT +     
Sbjct: 280 RHGF---QSGEVQVTLITAGSKLPRQDDLVRMLRLTIPEVS-GISLNINPKKTSLIFGDR 335

Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGN 220
            V     E +  +   L +     +F Q N    V + E V  AA    +  +++ YCG 
Sbjct: 336 TVSLWGAESMQESLSDLQFSLSPRAFFQLNPQQTVKLYESVRAAAGLTGKETVIDAYCGT 395

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L LA +   V  +E    +VE A+ N   N   N       ++E      +E    
Sbjct: 396 GTIGLWLAPYAKEVRGIETIPEAVEDAKANAQRNGRANASFHVGQAEELLPRWVKE---- 451

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILST 337
                     +   I  DPPR+GLD   +  V        +Y+SCNP +L +D   +L  
Sbjct: 452 --------GMKPDVIIADPPRTGLDPRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDG 503

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E     D FP T H+E  +L+  K
Sbjct: 504 GYELEWAQPVDMFPQTSHVEAVLLMKLK 531


>gi|284049068|ref|YP_003399407.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM
           20731]
 gi|283953289|gb|ADB48092.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM
           20731]
          Length = 458

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 141/389 (36%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QLA K   +   M              +   +P HYR + +       +
Sbjct: 86  GCQLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQETLGAEDPWHYRNKMQVPAAQGRN 145

Query: 57  DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKL 104
                  + Q T   + +   +      N ++  +           +       ++R  +
Sbjct: 146 HTLAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVRSWMEKYRIPALEEDARRGIVRHIM 205

Query: 105 FQIDYLTSQSDQAIVTLI----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            ++   T +    +VT      + + L    R+        +     +   +    K K+
Sbjct: 206 GRVGVQTGEVMAVLVTNEPQVPHLKDLTALLRQEIPGFTTLVQNLNTRHTNVIMGPKNKV 265

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
                 + +RL        +    +SF Q N      + E  L  A    +  +++ YCG
Sbjct: 266 IWGPGVIHDRLG----KFTFTISPHSFFQVNTLQAEKLYETALQYAALTGKEKVIDAYCG 321

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L LA+   R L +EI +P++  AR N   N V+NV  +   + +           
Sbjct: 322 TGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFLCGDAAK----------- 370

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-S 336
             + ++     R   + +DPPR+G +   +  +       ++Y+SCNP SL RD +IL  
Sbjct: 371 -EMPELVRQGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLARDAAILRD 429

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
               + ++   D FP+T H+E   LL  +
Sbjct: 430 KGFVVRKVQPVDMFPHTSHVETVCLLTLR 458


>gi|257086087|ref|ZP_05580448.1| RNA methyltransferase [Enterococcus faecalis D6]
 gi|256994117|gb|EEU81419.1| RNA methyltransferase [Enterococcus faecalis D6]
          Length = 457

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL+ K  ++  +M              I  ++P HYR +A+  +    + L    F 
Sbjct: 92  YGAQLSFKTQQVENVMQRVAKLPEVPVLPIIGMNDPWHYRNKAQIPVRKIDNQLQTGFFR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + + + + +++F      I+A ++++   +R               LR  + +  Y T +
Sbjct: 152 KNSHDLIPMEHFYIQDPEIDAAIVKIRDIMRKYSVKPYNESDNTGNLRHIVVRRGYHTGE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               ++T      L    +     L +A+      +Q +     T +    +    +  +
Sbjct: 212 MMVVLITRTP--KLFPISKIVPDIL-EAIPEVVSIVQNVNPKR-TNVIFGDETILLHGSK 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           ++T     L +     SF Q N      M + V         + +++ YCG G   L LA
Sbjct: 268 KITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEYAALTGNEIVVDAYCGIGTIGLTLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +E+ + +V+ A  N   N++ N       ++E             L  +  +
Sbjct: 328 QDAKQVYGIEVIEEAVKDAENNAKLNNIENATFTAGLAEEL------------LPKLVEN 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   + VDPPR GLD   V  +       I+Y+SCNP +L RD+++L    +  + + 
Sbjct: 376 GLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDIALLTEGGYEAKEIQ 435

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 436 PVDNFPQTTHIESVTLLTK 454


>gi|319892940|ref|YP_004149815.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162636|gb|ADV06179.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 454

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 156/388 (40%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML-AFQVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K  ++  +     ++  + I       +P  YR +++  +  + +
Sbjct: 82  GCQLQHLSYRAQLEMKRKQVINLFHHKGKMTEVPIHDTIGMDDPWRYRNKSQIPVGTNRN 141

Query: 57  DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104
                  + Q++ + + +D+ +  +   N +M  + + +             + L+R  +
Sbjct: 142 GQIQMGFYRQRSHDIIDMDHCLIQNDDQNDMMNVIKSLLEKYHIPAYNEHIHQGLVRHVV 201

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T++     V     L +H  +  A      ++       +     +   + +K 
Sbjct: 202 IRKGYYTNEVMVIFVLNGKKLPHHNDIVTALTSQFPQIVSIKLNFQTNKTNVIMGHTSKT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D +++ L      L +   + SF Q N      +    L        ++ L+ YCG
Sbjct: 262 IFGKDIIEDTL----DDLTFEIGDLSFYQINVTQTQKLYRQALQYANLTGNEVVLDAYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL +A H   V  VE+   ++E A+ N   N +NN   V  ++++     +++   
Sbjct: 318 IGTISLFMAPHAQHVYGVEVVPEAIEDAKRNARYNQLNNTTFVAGAAEDVILKWQQD--- 374

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D   +  + A     I+Y+SCNP +  RD+ +LS 
Sbjct: 375 ---------GIQPDVVTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLRDIEMLSA 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + ++ +   D FP+T H+E   LLVRK
Sbjct: 426 QYELKEMTPVDMFPHTTHVETVALLVRK 453


>gi|311067291|ref|YP_003972214.1| putative RNA methyltransferase [Bacillus atrophaeus 1942]
 gi|310867808|gb|ADP31283.1| putative RNA methyltransferase [Bacillus atrophaeus 1942]
          Length = 466

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 152/395 (38%), Gaps = 48/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNL----QIFRSEPIHYRMRAEFHIWH- 53
              L    Y QQL EK D + Q +     F+V ++     I    P +YR +++F I   
Sbjct: 90  GCQLQHLAYTQQLREKRDIVIQSLERHTKFKVEDMNIKETIGMDNPWNYRNKSQFQIGRS 149

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRA 102
               +   ++   +   + I          N              + +    + +  +R 
Sbjct: 150 QSGSIIAGLYGMDSHNIVPIKDCKVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRT 209

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RA 155
            + ++ +   ++ +  V LI  +       E    ++  L   K  IQ +          
Sbjct: 210 IVTRVGF---ETGEVQVVLITSKETLPHKEEIVQAIQKRLPEVKSIIQNVNGAKTSVIFG 266

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214
           +KTK       + E L      + +     +F Q N    V + + V  AA    +  ++
Sbjct: 267 DKTKALAGNTVIQEVLG----DVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVV 322

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G   + +A     V  +++ K S++ A+ N   + + N   V  +++ +     
Sbjct: 323 DAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMTNATYVTGTAEHWLPKWT 382

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
           +E             +R   + VDPPR+G D   +  ++       +Y+SCNP +L +DL
Sbjct: 383 KE------------GFRPDVVIVDPPRTGCDTTFLDTIKKVKPKRFVYVSCNPSTLAKDL 430

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             LS  + +E +   D FP T H+E    LV K S
Sbjct: 431 QALSKDYRVEYIQPVDMFPQTAHVEAVAQLVLKSS 465


>gi|259502578|ref|ZP_05745480.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
           DSM 16041]
 gi|259169468|gb|EEW53963.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
           DSM 16041]
          Length = 479

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 152/383 (39%), Gaps = 38/383 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +Y  QL  K  ++ +++    +  +++        P HYR +A+  +      L  
Sbjct: 109 LGHLKYLAQLRFKQHQIEELLAKAHLDGIKVAPTMGMERPYHYRNKAQVPVKLVHGKLET 168

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
             + + +   + I+ F      I+  ++ +   +R            + ++R  + +  Y
Sbjct: 169 GFYKRGSHTLVPIEDFYIQDPKIDEAIVVVRDLLRKYHVTPYDERTGKGVIRTVMVRRGY 228

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---Y 166
            + +    +VT      + +   +    +   +   K  +Q I      K+  D D   +
Sbjct: 229 YSHEVMVVLVTNTKRLPMKE---QIVDGIVAGVPEVKSIVQNINDKRTNKLLGDTDKTLW 285

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225
             + +      + +     SF Q N      + +  +  A       +++ YCG G  SL
Sbjct: 286 GKDEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDSAGLDGSQTVIDAYCGIGTISL 345

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH  +V  VEI   ++E A++N   N + N K V   +++            +    
Sbjct: 346 AVARHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFVVGKAED------------QFAKW 393

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS--TTHTI 341
                +   + VDPPR GL ++ +      A   ++Y+SCNP +L RD+   +    H +
Sbjct: 394 QAAGLKPDVVIVDPPRKGLAESLIEATGEMAPQKVIYVSCNPATLVRDIQRFADVGYHVV 453

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   DQFP T H+E   +L R
Sbjct: 454 KPIQPVDQFPQTTHVESVTVLER 476


>gi|326204866|ref|ZP_08194719.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM
           2782]
 gi|325984915|gb|EGD45758.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM
           2782]
          Length = 462

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 145/387 (37%), Gaps = 42/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              +    Y+ QL  K D + Q +           N  I    P  YR + ++ +  D  
Sbjct: 87  GCAVQHMSYQAQLDFKKDTVLQNIRRIGGLQNIKVNNTIGMENPFKYRNKVQYPVGSDKG 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALM-----------IEMMATIRLEPLLRAKLF 105
           D+    ++ ++   +  +         N +            I +      + LLR  + 
Sbjct: 147 DIRIGFYETRSHNIIDSNLCDIQPDESNNIRDVVRDFCKDEGIAIYDEKTGKGLLRHVMV 206

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR- 164
           +  + T +    +V         D   E   +L +     K  I  +     T I L   
Sbjct: 207 RKGFKTEEIMVVLVVNGNKLAKSD---ELVNKLLEYFPDIKSIILNVNT-RNTNIILGDK 262

Query: 165 ---DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
               Y  + +T    +  +     SF Q N      + E  L    G+ G+  + +LYCG
Sbjct: 263 NICIYGQKYITDYIGSFKFEISPLSFFQVNPIQTEVLYEKALE-YAGLSGNETVFDLYCG 321

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL L++    V+ VE+   ++  A+ N   N V+NV+ +   +++    +      
Sbjct: 322 IGTISLFLSQKAKHVVGVEVVADAICDAKRNAEINGVSNVEFLVGEAEKVIPELYA---- 377

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D   +  +V+  P  I+Y+SCNP +L RDL  L+ 
Sbjct: 378 --------QGVKADVVVVDPPRKGCDQLLLNTLVEMQPQRIVYVSCNPSTLARDLKYLTE 429

Query: 338 -THTIERLALFDQFPYTRHMECGVLLV 363
                + +   D FP+T H+E  + + 
Sbjct: 430 HGFEAKEVQPVDMFPWTGHVESIIWMQ 456


>gi|255280263|ref|ZP_05344818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
 gi|255269354|gb|EET62559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
          Length = 399

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 151/387 (39%), Gaps = 44/387 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60
               L   Y QQL  K  ++ +++  F      I    P +YR +           ++  
Sbjct: 30  GCQFLGMPYAQQLNIKQHQVEKLLRPFGRVCPIIGMENPYYYRNKVHAVFGRTRTGEIIC 89

Query: 61  IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDY 109
             + + T + + ++  +               L+ +  I+         LLR  L +  +
Sbjct: 90  GTYQENTHKIIPVEQCLIEDRKSEEIIRSIRGLLKSFKIKTYDEDTGYGLLRHVLVRRGF 149

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--------KIC 161
              QS Q +V L+    +  +       LR  LH     I L   A KT        K  
Sbjct: 150 ---QSGQIMVVLVLADPIFPSKNNFVSALR-RLHPEITTIILNINAKKTSMVLGEREKTL 205

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
               Y+++ L        +R    SF Q N      + +  +  A    +  +L+ YCG 
Sbjct: 206 YGPGYIEDTLLGK----TFRISAKSFYQVNPVQTEVLYQTAIGYAALTGKERVLDAYCGI 261

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L+ A     V+ VE+   ++  AR N   N + NVK     + +F   +       
Sbjct: 262 GTIGLLAASQAKEVIGVELNADAIRDARINARRNSITNVKFYNADAGKFMTGLAE----- 316

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
                   +     +F+DPPR+G D+A +  V       ++YISCNP++L RDL  L+  
Sbjct: 317 -------QNINVDVVFMDPPRAGSDEAFLSSVVKLQPGKVVYISCNPETLARDLKYLTGN 369

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + +E++   D F +T H+EC VL+ +
Sbjct: 370 GYKVEKIQPTDMFCFTEHVECVVLMSK 396


>gi|167760785|ref|ZP_02432912.1| hypothetical protein CLOSCI_03170 [Clostridium scindens ATCC 35704]
 gi|167661672|gb|EDS05802.1| hypothetical protein CLOSCI_03170 [Clostridium scindens ATCC 35704]
          Length = 567

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 152/393 (38%), Gaps = 38/393 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLR-QMMLAFQVP--------NLQIFRSEPIHYRMRAEFHI 51
            G  + + +Y++QLA K D++R  +M   +VP           +    P HYR +A+F I
Sbjct: 81  GGCQIQEMEYDRQLAFKEDKIRGNLMRIGEVPAEVLDQALEPIVGMDNPFHYRNKAQFPI 140

Query: 52  WHDGDD-LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99
             D +  +    +  +T   +       G  +           +    I        + L
Sbjct: 141 GTDNEGHIITGFYAGRTHSIIPNTDCALGVEVNEVILKQILTFMEEYKISAYDETEHKGL 200

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRAN 156
           +R  L +  ++T +    +V    H    +   E   ++        +   +   +   +
Sbjct: 201 VRHVLIRYGFVTKEIMVCLVINGNHLPHGEILAERLAKIEGMTSITLSINKEKTNVIMGS 260

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215
           K +    + Y+    T     + Y+    SF Q N      +    L  A    +  + +
Sbjct: 261 KIEPLWGKTYI----TDYIANVKYQISPLSFYQVNPVQTEKLYGLALEYAGLTGKETVWD 316

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G  SL LA+    V  VEI   ++E A  N   N + N +     ++E       
Sbjct: 317 LYCGIGTISLFLAQKAKEVYGVEIVPQAIEDASNNAKINGIENARFYVGKAEEVLPEYYA 376

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333
           + E          +     I VDPPR G +++ +  MV   P  I+Y+SC+  +L RD+ 
Sbjct: 377 QYEKEHG-----RNAHADVIVVDPPRKGCEESLLQTMVDMEPERIVYVSCDSATLARDVK 431

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            L    + + R    DQF +T H+E   LL+ K
Sbjct: 432 FLREKGYELVRGRGVDQFGHTVHVETVALLIPK 464


>gi|323464007|gb|ADX76160.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius
           ED99]
          Length = 454

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 157/388 (40%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML-AFQVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K  ++  +     ++  + I       +P  YR +++  +  + +
Sbjct: 82  GCQLQHLSYRAQLEMKRKQVINLFHHKGKMTEVPIHDTIGMDDPWRYRNKSQIPVGTNRN 141

Query: 57  DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104
                  + Q++ + + +D+ +  +   N +M  + + +             + L+R  +
Sbjct: 142 GQIQMGFYRQRSHDIIDMDHCLIQNDDQNDMMNVIKSLLEKYHIPAYNEHIHQGLVRHVV 201

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T++     V     L +H  +  A      ++       +     +   + +K 
Sbjct: 202 IRKGYYTNEVMVIFVLNGKKLPHHNDIVTALTSQFPQIVSIKLNFQTNKTNVIMGHTSKT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
              +D +++ L      L +   + SF Q N      +    L        ++ L+ YCG
Sbjct: 262 IFGKDIIEDTL----DDLTFEIGDLSFYQINVTQTQKLYRQALQYANLTGNEVVLDAYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL +A H   V  VE+   ++E A+ N   N +NN   V  ++++     +++   
Sbjct: 318 IGTISLFMAPHAQHVYGVEVVPEAIEDAKRNARYNQLNNTTFVAGAAEDVILKWQQD--- 374

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D   +  + A     I+Y+SCNP +  RD+ +LST
Sbjct: 375 ---------GIQPDVVTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLRDIEMLST 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + ++ +   D FP+T H+E   LLVRK
Sbjct: 426 QYELKEMTPVDMFPHTTHVETVALLVRK 453


>gi|291522721|emb|CBK81014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus catus
           GD/7]
          Length = 448

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 154/389 (39%), Gaps = 44/389 (11%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
            G       Y++QL+ K  +   ++  F      I   +P+HYR +       +      
Sbjct: 80  GGCQYQGMAYKKQLSLKQRQANMLLGKFGTVLPIIGMKDPLHYRNKVHAVFAFEKGKAIA 139

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDY 109
             + + T + + ++  +      +A++  +   +R              LLR  L +  +
Sbjct: 140 GTYQEGTHKVVPVESCLIDDEKSDAIIQTIRELLRSFKIKTYNEDSGYGLLRHVLIRRGF 199

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-------L 162
               SD+ +V L+    +  +       LR         I  +   N + +         
Sbjct: 200 ---TSDEIMVVLVASSPVFPSKNNFVKALRKEHPEITTVILNVNDQNTSMVLGERNITLY 256

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
            + Y+ + L        +    ++F Q N  +   +L        G+ G   +++ YCG 
Sbjct: 257 GKGYIVDTLC----GHTFAISPSAFYQVNP-VQTEILYQTAMDYAGLTGKETVVDAYCGI 311

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   ++ A     V+ VE+   SV+ AR N   N++ N+   +  ++ F   M+      
Sbjct: 312 GTIGIIAADKAKSVIGVELNPASVKDARNNARHNNIGNITFYQNDAERFLNEMQE----- 366

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTT 338
                   + +   IF+DPPR+G   + +   +   P  I+YISCNP++L RDL  L   
Sbjct: 367 -------QNAKADVIFMDPPRAGSTHSFMASAISLNPDRIVYISCNPETLARDLEFLKKH 419

Query: 339 -HTIERLALFDQFPYTRHMECGVLLVRKP 366
            +T E++   D FP+T HME   LL R+ 
Sbjct: 420 QYTAEKIQPVDMFPFTTHMETVCLLTRRK 448


>gi|154503473|ref|ZP_02040533.1| hypothetical protein RUMGNA_01297 [Ruminococcus gnavus ATCC 29149]
 gi|153795573|gb|EDN77993.1| hypothetical protein RUMGNA_01297 [Ruminococcus gnavus ATCC 29149]
          Length = 464

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 145/392 (36%), Gaps = 36/392 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52
              +    YE+QL  K  ++   +             + +  +    P HYR +A+F   
Sbjct: 79  GCQIQQISYEKQLEFKNRKVLGNLERIGGFSPELLEKIADPIVGMEIPFHYRNKAQFPFG 138

Query: 53  HDGDD-LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLL 100
            D +       +  +T + +       G              +    +E       + LL
Sbjct: 139 KDKNGVTVTGFYAGRTHDIIANTDCALGVEQNQEILETILSFMEQYQMEPYDEKTGKGLL 198

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANK 157
           R  L +  + T +    +V         +   E   ++        +   +   +   + 
Sbjct: 199 RHVLIRYGFTTKEIMVCLVINAKKIPHCEKLVELLQKIEGMTSITISVNQKNTNVIMGDS 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLEL 216
            ++   + ++ + +      + Y+    SF Q N      +    L  A       + +L
Sbjct: 259 YEVLWGQAFITDYIG----EIKYQISPLSFFQVNPVQTEKLYGLALEYADLKGDETVWDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  SL LA++  +V  VEI   ++E AR N   N + N K     ++E       +
Sbjct: 315 YCGIGTISLFLAQNAKQVYGVEIIPQAIEDARKNAQINGIENAKFYVGKAEEVLPGYYAD 374

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSI 334
                 K           I VDPPR G +++ +  MVQ  P  I+Y+SC+  +L RDL  
Sbjct: 375 YA----KAHPGEQAHADVIVVDPPRKGCEESLLETMVQMQPERIVYVSCDSATLARDLKY 430

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           L    + + ++   DQF  T H+E  VLL R+
Sbjct: 431 LCGNGYELVKVRAVDQFSQTVHVETCVLLQRR 462


>gi|323451355|gb|EGB07232.1| hypothetical protein AURANDRAFT_53938 [Aureococcus anophagefferens]
          Length = 473

 Score =  281 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 140/384 (36%), Positives = 211/384 (54%), Gaps = 23/384 (5%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQIFRSEPIHYRMRAEFHIWHD----GDD 57
           +     Y+ QLA KV R+R ++           +  S   H+R R+ F +WH+    G  
Sbjct: 11  SCDESGYDAQLAAKVARVRALLGEVAELPETTTVVPSPKSHFRQRSNFRVWHEPEATGLG 70

Query: 58  LYHIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           +  IM+   +  KE +R+  F  G    NALM  ++A ++  P+LR K+ +  + ++   
Sbjct: 71  VSFIMYSPSSSDKEPLRVGDFARGDAKTNALMGPVLAALKTTPVLRDKVIECRFHSTLRG 130

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-----CLDRDYVDER 170
            A+V   Y+R +D      A             + +IGR+ + +I     C  R  V+E 
Sbjct: 131 GAMVLFAYNRPIDADAAWKAAA-EALAAQLGPDVVVIGRSRRVQIAVGGACPGRAQVEET 189

Query: 171 LTVAGRT---LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNF 223
           L +       L   Q+E  F+QPN  +   ML W +AATK  +G    DLLELYCGNGNF
Sbjct: 190 LEIPCEPPLRLELVQLEGEFSQPNGAVCERMLAWAMAATKPAEGAAPRDLLELYCGNGNF 249

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           ++ L+RHF +VLA E+ KP+   AR N A N  +NV + R+S+ E  +A+RR+REF RLK
Sbjct: 250 TIPLSRHFRKVLATELTKPNAAVARENAAKNGRSNVVVARLSAAEVAEALRRDREFARLK 309

Query: 284 D--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341
           +  +D+ +Y   T+FVDPPR GLD  T+ +   +  ++Y+SC PD+L  +L  L+ TH +
Sbjct: 310 ELGVDLDAYDLGTLFVDPPRCGLDAPTLKLAHGFETVVYMSCGPDTLAENLHALNATHVV 369

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
              A+FDQFPYT H E GV+L R+
Sbjct: 370 ADFAVFDQFPYTDHCEVGVVLKRR 393


>gi|154482861|ref|ZP_02025309.1| hypothetical protein EUBVEN_00557 [Eubacterium ventriosum ATCC
           27560]
 gi|149736289|gb|EDM52175.1| hypothetical protein EUBVEN_00557 [Eubacterium ventriosum ATCC
           27560]
          Length = 463

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 148/394 (37%), Gaps = 40/394 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
              +    Y++QL  K +++   ++        V N  +   EP +YR +++F +  D  
Sbjct: 80  GCQIQCINYKEQLRFKKNKVYNNLVRIGGQSDFVMNDVMGMDEPFNYRNKSQFPVGMDKE 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL----------------INALMIEMMATIRLEPL 99
            ++    +  +T   + ID    G  +                +    I     +  + L
Sbjct: 140 GNIISGFYAGRTHSIINIDSCDLGLKIDGRDVNKEVMDTVKAFMTKYRIAPYNEVTHKGL 199

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRAN 156
           +R  L +I   T Q    ++    +    +   E   +L            +   +   +
Sbjct: 200 VRHVLIRIGAKTKQIMVCVIINGKNLPNKEKLVEELCKLEGMYSISLNINTKKSNVILGD 259

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215
           K        Y+++ +      + +R    SF Q N      +    L        + + +
Sbjct: 260 KVINLYGPGYIEDYIG----DVKFRISPLSFFQVNPVQTEKLYNKALEYADLTGNEMVWD 315

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G+ SL LA+   +VL VEI   ++  A+ N   N +NN +    ++++       
Sbjct: 316 LYCGIGSISLFLAKKAKQVLGVEIVPEAIADAKINAKINGINNAEFFVGAAEDVVTEYFE 375

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333
             +       D    +   I VDPPR G D   +  +       ++Y+SC+  +L RD+ 
Sbjct: 376 NHK-------DDEECKPDVIVVDPPRKGCDHKLLETIVEMNPERVVYVSCDSATLARDVK 428

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
            LS   + ++ +   D F  T H+E  V L RK 
Sbjct: 429 WLSENGYKLKEVTPCDMFGQTTHVESVVKLHRKD 462


>gi|242241735|ref|ZP_04796180.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
           W23144]
 gi|242234825|gb|EES37136.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
           W23144]
          Length = 472

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/389 (18%), Positives = 141/389 (36%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWH-DG 55
              L    Y  QL  K +++  +               I    P  YR +++  +   + 
Sbjct: 98  GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTIIKETIGMDNPWRYRNKSQIPVGQGNS 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           + +    + Q++ + + +D  +                +N L I +        L+R  +
Sbjct: 158 NQVIMGFYRQRSHDIIDMDSCLIQDKQHQEVMNRVKYWLNELNISIYNEKAKTGLIRHLV 217

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T +     VT         LL +  ++    +             +    ++  
Sbjct: 218 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 277

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++++L+     +IY   + SF Q N+     + +  L   +    + +L+ YCG
Sbjct: 278 LYGKDKIEDQLS----EVIYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 333

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N + N       +++     +     
Sbjct: 334 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 389

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+ 
Sbjct: 390 --------QGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIIYISCNPSTQQRDAQILAE 441

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + +  +   D FP T H+E   L VRK 
Sbjct: 442 QYELVEITPVDMFPQTTHIETVALFVRKD 470


>gi|300853527|ref|YP_003778511.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM
           13528]
 gi|300433642|gb|ADK13409.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM
           13528]
          Length = 476

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 144/408 (35%), Gaps = 60/408 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------------------------IF 36
              L    YE QL  K  R++  +       ++                         + 
Sbjct: 83  GCQLQHMSYEGQLDFKKKRVKDCLERIGKFEVEEQDRIFKDNVLEKSSEDTSVKLYNTLG 142

Query: 37  RSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINA 85
            + P  YR + +  +      +    + + + E + ++  +                I  
Sbjct: 143 MTNPYRYRNKVQLPVGKCNQKINIGFYAKASHEIIDMESCLIQDETSDKIVKFMRDWIEK 202

Query: 86  LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDA 141
             IE          ++  + +  + T +    IVT    L + + L +   +    ++  
Sbjct: 203 YNIEPYDEKTGRGTIKHIMTRKGFATGEIMLVIVTFTENLPHKKELVELMCKNISGVKSI 262

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           +H        +    K      +D + + +        +     SF Q N      +   
Sbjct: 263 VHNINNNKTNVILGKKCVNLWGQDTIRDAIG----NFKFNISPLSFFQVNPIQTEVLYSK 318

Query: 202 VLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            L        +++ + YCG G  SL L++   +V  VEI   +++ AR N   N VNNV+
Sbjct: 319 ALEYAGLSGNEVVFDAYCGTGTISLFLSQKSKKVYGVEIIDEAIKNARINAEQNGVNNVE 378

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-I 318
            +   S+              + ++     +   + VDPPR G D   +  +    P  +
Sbjct: 379 FITGKSEVV------------IPELISKGIKADVVVVDPPRKGCDMGLLKAIADMEPRTV 426

Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +Y+SC+P +L RDL++L    +  + +   D F  T H+E  VL+ RK
Sbjct: 427 VYVSCDPATLARDLAVLRELGYMTKEVQPVDMFAQTAHVETVVLMSRK 474


>gi|315645532|ref|ZP_07898656.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
           V453]
 gi|315279010|gb|EFU42320.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
           V453]
          Length = 532

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 138/388 (35%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              +    YE QL  K D +R+    +           +    P  YR +A+  +   G 
Sbjct: 158 GCQIQHISYEGQLQAKTDIVREAFSRYAGREAVKFKPILGMEHPWDYRNKAQLQLKRKGH 217

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105
           ++   +++  +   + I         +N            L I +      +  +R  + 
Sbjct: 218 EVIAGLYEADSHTIVDISGCPIQHPKVNEAVEKVKSVLEELRIPLHKENGNKDGVRTIVV 277

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +  + + +    +VT        D      +R+          I L     KT +     
Sbjct: 278 RHGFQSGELQVTLVTAGGKLPRQD----DLVRMLRLSIPEVSGISLNINPKKTSLIFGDR 333

Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGN 220
            +     E +  +   L +     +F Q N    V + E V  AA    +  +++ YCG 
Sbjct: 334 TISLWGAESMQESLSDLQFSLSPRAFFQLNPQQTVKLYESVRAAAGLTGKETVIDAYCGT 393

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L LA +   V  +E    +VE A+ N   N   N       ++E      +E    
Sbjct: 394 GTIGLWLAPYAKEVRGIETIPEAVEDAKANAQRNGRANASFHVGQAEELLPRWVKE---- 449

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILST 337
                     +   I  DPPR+GLD   +  V        +Y+SCNP +L +D   +L  
Sbjct: 450 --------GMKPDVIIADPPRTGLDSRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDG 501

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E +   D FP T H+EC VLL  K
Sbjct: 502 GYELEWVQPVDMFPQTSHVECTVLLKWK 529


>gi|329930050|ref|ZP_08283675.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
           HGF5]
 gi|328935449|gb|EGG31921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
           HGF5]
          Length = 532

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 139/388 (35%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              +    YE QL  K D +R+    +   +       +    P  YR +A+  +   G 
Sbjct: 160 GCQIQHISYEGQLQAKTDIVREAFSRYAGLDDVKFKPILGMEHPWDYRNKAQLQLKRRGH 219

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105
           ++   +++  +   + I         +N            L I +      +  +R  + 
Sbjct: 220 EVIAGLYEADSHTIVDISGCPIQHPKVNETVEKVKSVLEELRIPLYKENGAKDGVRTIVV 279

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +  +   QS +  VTLI          +    LR  +      I L     KT +     
Sbjct: 280 RHGF---QSGEVQVTLITAGSKLPRQDDLVRMLRLTIPEV-SGISLNINPKKTSLIFGDR 335

Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGN 220
            +     E +  +   L +     +F Q N    V + E V  AA    +  +++ YCG 
Sbjct: 336 TISLWGAESMQESLSDLQFSLSPRAFFQLNPQQTVKLYESVRAAAGLTGKETVIDAYCGT 395

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L LA +   V  +E    +VE A+ N   N   N       ++E      +E    
Sbjct: 396 GTIGLWLAPYAKEVRGIETIPEAVEDAKANAQRNGRANASFHVGQAEELLPRWVKE---- 451

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILST 337
                     +   I  DPPR+GLD   +  V        +Y+SCNP +L +D   +L  
Sbjct: 452 --------GMKPDVIIADPPRTGLDPRFLETVLRTKPKRFVYVSCNPSTLAKDCKVLLDG 503

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +E     D FP T H+E  +L+  K
Sbjct: 504 GYELEWAQPVDMFPQTSHVEAVLLMKLK 531


>gi|331702034|ref|YP_004398993.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129377|gb|AEB73930.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
           B-30929]
          Length = 456

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 149/383 (38%), Gaps = 39/383 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L   +Y+ QL  K  +++      +     N  I   +P HYR +A+  +      L   
Sbjct: 88  LQHLKYDAQLKFKQHQIQVDFDKMKLDVTVNPTIGMDDPTHYRNKAQIPVRSINGQLQTG 147

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ- 113
            + + + + + I+ F      I+  ++ +   +         E   +  +  I       
Sbjct: 148 FYRKHSHDLVPIEDFYIQDPKIDEAVVVVRDILRKFRVQPYDEQTNKGVVRNIMVRRGYY 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDY 166
           S + ++ LI       +  E    +  +L   K  +Q +           K K+   +  
Sbjct: 208 SHEMMIVLITRTEKLPSSSEIVAEVEQSLPEVKSIVQNVNPEKTNALMGKKNKVLAGKST 267

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
           +++ L      L +    +SF Q N      + +           D+ ++ YCG G  SL
Sbjct: 268 IEDTLL----GLKFDISASSFYQVNPVQTEKLYDLATKKADLSADDVVIDAYCGIGTISL 323

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +AR   +V  VEI   +VE A+ N   N++ NV  V   ++             ++   
Sbjct: 324 SMARVAKQVYGVEIVPEAVEDAKKNAKLNNLTNVHFVASKAE------------TQMAKW 371

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342
                +   I VDPPR GLD + +  V       ++Y+SCNP +L RD+ +     + + 
Sbjct: 372 QEDGLKPDVISVDPPRKGLDASLIDSVVKMQPKRVVYVSCNPATLARDVKLFTEQGYQVN 431

Query: 343 R-LALFDQFPYTRHMECGVLLVR 364
           + +   DQFP T H+E   +L R
Sbjct: 432 QPIQPVDQFPQTVHVESITVLER 454


>gi|329734762|gb|EGG71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis VCU045]
          Length = 456

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/389 (18%), Positives = 139/389 (35%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K +++  +               I    P  YR +++  +     
Sbjct: 82  GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMDNPWRYRNKSQIPVGQSNS 141

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +      + Q++ + + +D  +                +N L I +        L+R  +
Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 201

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T +     VT         LL +  ++    +    H        +    ++  
Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKHNINNSHSNVIMGRQSMT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++++L+     + Y   + SF Q N+     + +  L   +    + +L+ YCG
Sbjct: 262 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N + N       +++     +     
Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+ 
Sbjct: 374 --------QGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + +  +   D FP T H+E   L VRK 
Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRKD 454


>gi|323351306|ref|ZP_08086962.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322122530|gb|EFX94241.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 469

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 162/387 (41%), Gaps = 46/387 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +     + ++++       +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ ++I   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVIIFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKIC 161
           + +    + +V L+  R       +   RL +A  A K  +Q I             +  
Sbjct: 216 HYSG---EIMVILVTTRPKIFRVEQLMERLTEAFPAIKSIMQNINDQPGNAIFGKDWRTL 272

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             +DY+ +R+        ++    +F Q N  +   + +  +  ++    D+ L+ Y G 
Sbjct: 273 YGQDYITDRMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGI 328

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L +A+H   V  VE+   +VE ++ N A N + N   V   ++E  Q   +E    
Sbjct: 329 GTIGLSVAKHVKEVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQNWLKE---- 384

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST- 337
                     +   I VDPPR GL ++ +   +   P  I YISCN  ++ RD+ +    
Sbjct: 385 --------GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMARDIKLYREL 436

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + ++++   D FP T H+E   LLVR
Sbjct: 437 GYELKKVQPVDLFPQTHHVETVSLLVR 463


>gi|299537400|ref|ZP_07050696.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
 gi|298727135|gb|EFI67714.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
          Length = 459

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 153/390 (39%), Gaps = 41/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    YE+QL EK D + Q +  +  P L+       +   +P HYR +++F +  +
Sbjct: 85  GCQLQHMTYEKQLIEKRDIVIQALERYAKPLLETIEVRKTLGMDDPWHYRNKSQFQVRKE 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
           G  +Y  +F + + + + I+  +               ++  L I +     L  L+R  
Sbjct: 145 GKRVYAGLFAEGSNKLLNINDCLVQHPITSKITVATRKILQKLNITIYDGRTLNGLVRTI 204

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +    T ++   +VT    R       E   R++    +     Q I R  KT +   
Sbjct: 205 VVRTGIRTGETQVVLVT---TRKEIPHLAELITRMKKIDPSIVSIAQNINR-EKTSLIFG 260

Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYC 218
            + V     E +      L +     +F Q N    VH+ + +  AA    +  +++ YC
Sbjct: 261 DETVVLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYDEIKKAAALSGKETVVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +++   S++ AR N   +   + K    +++       +E  
Sbjct: 321 GVGTIGLWLADKAKEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLAKWCKE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336
                      +    I VDPPR+GL    +  V        +Y SCNP +L +DL  L+
Sbjct: 379 ----------GFTPDVITVDPPRTGLAPEFIRTVLKLKPKRFVYTSCNPSTLAKDLQQLT 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + +E +   D F  T  +EC   LV K 
Sbjct: 429 KLYDVEYIQPVDMFAQTAQVECVAKLVLKN 458


>gi|297622046|ref|YP_003710183.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
           86-1044]
 gi|297377347|gb|ADI39177.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
           86-1044]
          Length = 441

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 149/381 (39%), Gaps = 37/381 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHIWHDGD 56
              ++   Y  QL  K  R+         + ++++        P+ YR + +  I    +
Sbjct: 80  GCQVMHLNYSSQLERKRQRVVDAFERIGKLMDVEVLPCVPSPLPLKYRNKVQAPIRQKKE 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTS 112
            L    + + +   + +D       L   +    +A ++   +    LR  + +    T 
Sbjct: 140 GLSIGFYARNSHHLVDVDLCYIHCALGQRVYERSVALLKSSGISKEKLRHLIIKTAVKTE 199

Query: 113 QSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
           Q+   IVT    +     L +  +     ++  +      +  +      ++   + +++
Sbjct: 200 QALVVIVTGTDQKKSLARLAEEIQRQCPEVKGVIQNVNPHLHNVVLGKTFEVLSGQGWME 259

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +      L +     SF Q N      +   V+   +   G+ +L+ YCG G  SL+L
Sbjct: 260 EEIL----DLRFYVSPASFFQVNPAQAEQLYRQVIDWAELKGGERVLDAYCGVGTLSLLL 315

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           AR   RV+ VE    ++  A  N + N + NV  V   ++++ Q+               
Sbjct: 316 ARKAGRVVGVECVPQAIADAERNASLNCLANVSFVCAEAEKWIQS--------------- 360

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERL 344
            + R   + ++PPR G     +  +       ++Y+SC+P +L RDL++L    + I+  
Sbjct: 361 -AERMDLVVLNPPRKGCHPEMIKAIGKMRPTRLIYVSCDPATLARDLAMLQESGYKIDGA 419

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E  V L  K
Sbjct: 420 CPFDMFPQTAHVETVVKLSTK 440


>gi|168178950|ref|ZP_02613614.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
 gi|182670032|gb|EDT82008.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
          Length = 461

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 145/387 (37%), Gaps = 37/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              +    Y+ QL  K  R+   +      ++        I    P  YR + +  +  +
Sbjct: 85  GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107
             ++    +  +T E   +               +I   M++   +   E   +  +  I
Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204

Query: 108 DYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
               +  ++ ++ +I     ++     E    +       K  IQ I    KT + L   
Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFSNIKSIIQNINT-KKTNVILGEK 263

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               +  + +T       +     SF Q N      + +  L        + + + YCG 
Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E            
Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV----------- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337
            + D+     + + + VDPPR G +   +  + A     I+Y+SC+P +L RDL IL+  
Sbjct: 373 -IPDLIDKGIKAEVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDLGILNGL 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  + +   D FP T H+E  VL+ R
Sbjct: 432 GYETKEVQPVDMFPQTSHVETIVLIQR 458


>gi|240145247|ref|ZP_04743848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
 gi|257202710|gb|EEV00995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
          Length = 621

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 161/396 (40%), Gaps = 44/396 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAE--FHIWHDGDDLYHIMFDQQ 66
            YE+QL EK + +R+ +  F      I    P HYR +    F I   G  +   ++   
Sbjct: 135 SYEKQLKEKQEYVRKNVGEFCRVLPIIGMEHPYHYRNKVHAVFDIA-KGGSVISGVYKAG 193

Query: 67  TKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           T + + ID                  L+ +  I+         LLR  L +  +    S 
Sbjct: 194 THDVVNIDSCRIEDETADAIIRDIRGLLRSFKIKTYDEDTGYGLLRHVLVRRGF---HSG 250

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--------ICLDRDYV 167
           + +V L+    +  +       LR  LH     + L     KT         +   + Y+
Sbjct: 251 EVMVVLVLGSPILPSKNNFVKALR-KLHPEITTVVLNVNDKKTSMVLGEKETVIYGKGYI 309

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226
           ++ L        +R    SF Q N      +    +  A    +  +++ YCG G   L+
Sbjct: 310 EDTLC----GCTFRISPKSFYQVNPVQTEILYTKAIEYAGLTGKERIVDAYCGIGTIGLI 365

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM---RREREFNRLK 283
            A     V++VE+ + +V  A  N   N + NV+     + +F   M   R +++ N++ 
Sbjct: 366 AASKAKEVISVELNRDAVRDAVTNAKRNDIKNVQFYNADAGQFMVEMAEYRADQKKNQVP 425

Query: 284 DIDIHSYRF------KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
           D      +         +F+DPPR+G D+A +  V   A   ++YISCN ++L RDL  L
Sbjct: 426 DATKSGKKATPDGNVDVVFMDPPRAGSDEAFLSSVIRLAPKRVVYISCNLETLARDLKYL 485

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLV-RKPSGW 369
           +   +  +     D FP+T+H+E  VLL  +KP G 
Sbjct: 486 TKHGYQAKECQPVDLFPWTKHVETVVLLSHKKPDGH 521


>gi|238917769|ref|YP_002931286.1| hypothetical protein EUBELI_01850 [Eubacterium eligens ATCC 27750]
 gi|238873129|gb|ACR72839.1| Hypothetical protein EUBELI_01850 [Eubacterium eligens ATCC 27750]
          Length = 484

 Score =  280 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 155/409 (37%), Gaps = 53/409 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWH-DG 55
              +    Y+ QL  K   +   +              I   EP  YR +A++ +     
Sbjct: 81  GCQIQQMSYQAQLRFKEKLVDDNLKRIGKIEGYEFFPAIGMEEPFRYRNKAQYPVGTAKD 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEP--------LLRAKL 104
             +    +  +T   +       G   +  I A++   M    + P        L+R  L
Sbjct: 141 GSVVMGFYAGRTHSIISCTDCKIGAVENQYILAVIKSWMELNGVAPYDEQTRKGLVRHVL 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----------------LRDALHARKYQ 148
            +  + T +    +V  I    + D  +E  +                 ++  +     +
Sbjct: 201 IRTGFHTDEIMVCLV--INGTKMSDKLKESLVGRLTEVSLDSDISTDKCIKSIMLNYNTE 258

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
              +    + +    + Y+++ +      + Y+    SF Q N      +    L    G
Sbjct: 259 NTNVILGRQCETLWGKSYIEDYIG----DIKYQISPLSFFQVNPRQTEKLYGKALE-YAG 313

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + G+  + +LYCG G  SL LA++  +V  VEI   ++E A+ N A N ++N +     +
Sbjct: 314 LTGNETVWDLYCGIGTISLFLAKNARKVYGVEIVPQAIEDAKNNAAINGIDNAEFFVGKA 373

Query: 267 KEFTQAMRREREF--------NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYP 316
           +E       E              ++    S     + VDPPR G D++ +  +   +  
Sbjct: 374 EEVVPHFYEEMARLATDTSATEAQREEARKSITPDVVVVDPPRKGCDESLLDTIVKMSPE 433

Query: 317 HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            I+Y+SC+  +L RDL +L +  +   ++   DQF +T H+EC  LLVR
Sbjct: 434 RIVYVSCDSATLARDLGLLAAKGYKTVKVQPVDQFSHTVHVECVCLLVR 482


>gi|57242357|ref|ZP_00370296.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis
           RM3195]
 gi|57017037|gb|EAL53819.1| tRNA (uracil-5-)-methyltransferase [Campylobacter upsaliensis
           RM3195]
          Length = 354

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 125/352 (35%), Positives = 203/352 (57%), Gaps = 11/352 (3%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRI 73
            +K+   +++   F     ++F S   H+R R E   +H +  ++++ MF+ + K  +  
Sbjct: 6   EQKILEAKELFKPFYKGEFELFSSPTSHFRTRVELSFFHSEDGEIFYAMFNGRKKYIVEN 65

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
             F+     I  LM +++  +  +  L+ KLF +++L S+ + + VTL+YH+ +      
Sbjct: 66  LDFV--DEKICLLMPKLLKALNDDNTLKNKLFGVEFLASKKELS-VTLLYHKDISTLKEN 122

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
            A        AR   + LI R+   K+   ++ + + L + G  + Y    + F QPN  
Sbjct: 123 LANL------ARNLNLNLIARSKGKKLVFGKENLRQVLDIKGEAIHYEFDNDCFIQPNTY 176

Query: 194 INVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+EWVL       + DLLELYCG GNF+L LA  F ++LA E++K ++  A  N  
Sbjct: 177 INEKMIEWVLKQISTEEKNDLLELYCGYGNFTLALASSFKQILATELSKKNIAYALKNCT 236

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N+  N++  R+SS+E ++A+++EREF RLKDID+ S+ F  I +DPPR+GL+++ + + 
Sbjct: 237 LNNATNIRFARLSSEELSKALKKEREFFRLKDIDLDSFHFSHILLDPPRAGLEESVIELA 296

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           Q Y HI+YISCNP SL  +L+ L+ THTI   ALFDQF  T H+E GV+L +
Sbjct: 297 QNYHHIIYISCNPTSLKENLTKLTKTHTITNFALFDQFALTPHLESGVILKK 348


>gi|332366968|gb|EGJ44708.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 469

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 152/384 (39%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +              +   +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPIIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L D   E    ++  +     Q          +    +
Sbjct: 216 HYSGEIMVILVTTRPKIFRVEQLMDRLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +R+        ++    +F Q N  +   + +  +  ++    D+ L+ Y G G  
Sbjct: 276 DYITDRMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+   +V  VE+   +VE +R N A N + N   V   ++E  Q   +E       
Sbjct: 332 GLSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQNWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMKPKKITYISCNVATMARDIKLYQELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E   LLVR
Sbjct: 440 LKKVQPVDLFPQTHHVEAVSLLVR 463


>gi|258508017|ref|YP_003170768.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
 gi|257147944|emb|CAR86917.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
 gi|259649345|dbj|BAI41507.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
          Length = 455

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 159/381 (41%), Gaps = 38/381 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L I  Y  QL  K  +++++     +       I    P+ YR +A+  +     +L   
Sbjct: 87  LSILAYPAQLKFKQHQIQELYKKAHLAIKVLPTIGMKHPLGYRNKAQVPVRLVRGELQTG 146

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + + + I+ F+  +  I+  ++ +   +R              ++R  + +    
Sbjct: 147 FYKKHSHDLVPIEDFLIQNPKIDQAIVVVRDLLRKYRVPPYDERTNRGVIRNIMVRRGRA 206

Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166
           T Q    +V   +    L+D  +E  + L +          +   +    K+K    RDY
Sbjct: 207 THQMMIVLVARTWQVPHLNDIVKEITLALPEVTSVVVNLNDKRTNVILGRKSKTIYGRDY 266

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           + ++L  +     ++    SF Q N      +    + A      + +++ Y G G  SL
Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISL 322

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH  +V  VE+ + +V  A  N A NH+ NV      +++  Q         + KD 
Sbjct: 323 TMARHAKQVYGVEVVESAVHDAEANAARNHIKNVTFEVGKAEDVMQ---------KWKDA 373

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
           D+       + VDPPR GLD   +  V     P I+YISCNP +L RDL +L+   +T +
Sbjct: 374 DLP---VDVLMVDPPRKGLDKTFIDAVGYMKPPKIVYISCNPATLARDLQLLAAFGYTAK 430

Query: 343 RLALFDQFPYTRHMECGVLLV 363
                D FP T+H+E   LL 
Sbjct: 431 ETQPVDMFPQTQHIESVTLLE 451


>gi|237809371|ref|YP_002893811.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187]
 gi|237501632|gb|ACQ94225.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187]
          Length = 447

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 155/384 (40%), Gaps = 37/384 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
              L    Y +QL  K  ++   +            +  SEP+ +R +A + +  +  + 
Sbjct: 79  GCQLSHLSYAEQLKLKQQQVIDALQRKGISNPVESCLGMSEPLAFRNKAVYAVRSENGEP 138

Query: 59  YHIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPL--------LRAKLFQI 107
               + + + + + I       P +  I A + + M  + +           LR  + + 
Sbjct: 139 QIGFYRKNSHQVIDIAACPVQHPQTTEIIAAIRQWMKDLHIAGYDEANHAGCLRYVMIRH 198

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIR---LRDALHARKYQIQLIGRANKTKICLDR 164
            + T+     +VTL      +    +       +   +H    +       ++ ++C   
Sbjct: 199 GFKTNACMVVLVTLTDELPGEAELLQYLTAGGNIDSVIHNINPERVNRILGSQQRVCYGA 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223
           + +++ L      L +    +SF Q N      +    L  A       ++++YCG G  
Sbjct: 259 EAIEDELH----GLTFSISAHSFYQVNPQQTDQLYATALQFAELKGDETVVDIYCGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA+   +V+ +E+   ++E AR N   N ++N +     ++E   A+          
Sbjct: 315 SLYLAQEASKVIGIEVVSQAIEDARSNAKRNQLDNTEFYVGKAEEVVPALYA-------- 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THT 340
                  R   + VDPPR G + A +  + A     I+Y+SC+PDSL RDL++L    + 
Sbjct: 367 ----QGLRADVVVVDPPRKGCELAVLNTMAAMTPERIVYVSCDPDSLARDLAVLQQAGYA 422

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           I ++   D FP++ H+E  V L+R
Sbjct: 423 ITKVQPVDMFPHSMHVETVVQLIR 446


>gi|319399862|gb|EFV88109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis FRI909]
          Length = 456

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/389 (18%), Positives = 141/389 (36%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWH-DG 55
              L    Y  QL  K +++  +               I    P  YR +++  +   + 
Sbjct: 82  GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTIIKETIGMDNPWRYRNKSQIPVGQGNS 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           + +    + Q++ + + +D  +                +N L I +        L+R  +
Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDKQHQEVMNRVKYWLNELNISIYNEKAKTGLVRHLV 201

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T +     VT         LL +  ++    +             +    ++  
Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++++L+     +IY   + SF Q N+     + +  L   +    + +L+ YCG
Sbjct: 262 LYGKDKIEDQLS----EVIYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N + N       +++     +     
Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+ 
Sbjct: 374 --------QGIKPDLVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + +  +   D FP T H+E   L VRK 
Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRKD 454


>gi|167464623|ref|ZP_02329712.1| TRNA (uracil-5-)-methyltransferase-related protein [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322381560|ref|ZP_08055534.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154454|gb|EFX46756.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 550

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/357 (22%), Positives = 135/357 (37%), Gaps = 41/357 (11%)

Query: 30  VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA---- 85
             +  +  SEP  YR +++     +   L    + Q +   + ++  +      +     
Sbjct: 210 TVHPTLGMSEPWRYRNKSQVPFGEEEGGLIGGFYAQGSHRIIDMETCLIQHEQNDDVVRI 269

Query: 86  -------LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL 138
                  L I          LLR  + +  + T +    +VT        + W      +
Sbjct: 270 VKETGTHLGINAYNETNHTGLLRHVVVKYGFRTGELMIVLVTNGKRIPHAEQW---ITAI 326

Query: 139 RDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           R+ L A +   Q I  A        +TK+   R    E +      + +     SF Q N
Sbjct: 327 REKLPAVQSICQNINMARTNVIFGDETKVLWGR----EVIYDYIGDVKFAISPRSFYQVN 382

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                 +    L     I  + +++ YCG G  SL LA+H  +V  VEI   ++E A+ N
Sbjct: 383 PVQTEVLYRKTLEYAGLIGKETVVDAYCGIGTISLFLAKHARKVYGVEIVPEAIEDAKRN 442

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N V+N +     ++E     +R               R   I VDPPR G D   + 
Sbjct: 443 AELNGVSNAEFAAGKAEEVLPGWQRA------------GVRPDVIVVDPPRKGCDAVLLD 490

Query: 311 MV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            +       ++Y+SCN  +L RDL +L    +    +   D FP+T H+EC VL+ R
Sbjct: 491 TILRLRPERVVYVSCNASTLARDLRVLEDGGYRTVEVQPVDMFPHTVHVECVVLMSR 547


>gi|322372576|ref|ZP_08047112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C150]
 gi|321277618|gb|EFX54687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C150]
          Length = 451

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 153/382 (40%), Gaps = 40/382 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61
              YE+QL  K  ++   +     + ++++        P  YR +A+  +      L   
Sbjct: 85  HMNYEEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETG 144

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110
            + + + + + I+ F+     I+ L++   +++    L+P        L+R  + +  + 
Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166
           + Q     VT    R       +   ++ +A       IQ I   N T     ++    Y
Sbjct: 205 SGQMMLVFVT---TRPKIFRIDQVIAKITEAFPNVVSIIQNINDKN-TNAIFGKEFRTLY 260

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225
             + +T +     Y     SF Q N  +   + +  +  +       +++ Y G G   L
Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A+    V  VE+ + +VE A+ N   N + N   V  S++       ++         
Sbjct: 321 SFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAENAMAKWSKD--------- 371

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342
                +   I VDPPR GL ++ +   V   P  I Y+SCNP ++ RD+ +     + ++
Sbjct: 372 ---GIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKLYQELGYELK 428

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           ++   D FP T H+EC  LLV+
Sbjct: 429 KVQPVDLFPQTHHVECVALLVK 450


>gi|293367789|ref|ZP_06614438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291318128|gb|EFE58525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 487

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 138/389 (35%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K +++  +               I    P  YR +++  +     
Sbjct: 113 GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMDNPWRYRNKSQIPVGQSNS 172

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +      + Q++ + + +D  +                +N L I +        L+R  +
Sbjct: 173 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 232

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T +     VT         LL +  ++    +             +    ++  
Sbjct: 233 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 292

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++++L+     + Y   + SF Q N+     + +  L   +    + +L+ YCG
Sbjct: 293 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 348

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N + N       +++     +     
Sbjct: 349 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 404

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+ 
Sbjct: 405 --------QGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 456

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + +  +   D FP T H+E   L VRK 
Sbjct: 457 QYELVEITPVDMFPQTTHIETVALFVRKD 485


>gi|160937669|ref|ZP_02085029.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439314|gb|EDP17066.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC
           BAA-613]
          Length = 459

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 88/400 (22%), Positives = 148/400 (37%), Gaps = 52/400 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQI------FRSEPIHYRMRAEFHIWHD 54
              L    YE+QL  K  ++   ++        +I         EP  YR +A+F    D
Sbjct: 79  GCQLQAMSYEEQLKFKERKVMNNLIRIGKFAEDEIHMLPIMGMEEPWRYRNKAQFPFGKD 138

Query: 55  GDDL-YHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRA 102
            D       +  +T   +  +  + G              +  + IE    +  + L+R 
Sbjct: 139 KDGNVIAGFYAGRTHAIVEAEDCLLGVEENREILDIVKRFMKEMKIEPYDELSHKGLVRH 198

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK-----YQIQLIGRANK 157
            L +  + T +    +V         +       RL + L           I       K
Sbjct: 199 VLIRKGFKTGEIMVCLVINGNKLPSKE-------RLVEMLTGGDGVKGMTSISYSVNQEK 251

Query: 158 TKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           T + + ++    Y    +T     + Y+    SF Q N      +    L    G+ G+ 
Sbjct: 252 TNVIMGKEIVNLYGPGYITDYIGNVKYQISPLSFYQVNPVQTERLYGTALE-YAGLTGNE 310

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LYCG G  SL LA+   +V  VEI   +++ AR N   N ++N +     ++E   
Sbjct: 311 IVWDLYCGIGTISLFLAQKAQKVYGVEIVSQAIKDARRNAEINGIHNAEFFVGKAEEVLP 370

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                      +  +        I VDPPR G D   +  +       ++Y+SC+  +L 
Sbjct: 371 -----------EQFEKKHVHADVIVVDPPRKGCDAVCLDTILKMRPERVVYVSCDSATLA 419

Query: 330 RDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           RDL  L+   + +ER    D FP T H+E  V L RK +G
Sbjct: 420 RDLRYLADGGYVVERGKCCDMFPGTVHVETVVELSRKTNG 459


>gi|327461108|gb|EGF07441.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 464

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 158/387 (40%), Gaps = 46/387 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +              +   +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKIC 161
           + +    + +V L+  R       +   RL +A  A K  +Q I             +  
Sbjct: 216 HYSG---EIMVILVTTRPKIFRVEQLMERLTEAFPAIKSIMQNINDQPGNAIFGKDWRTL 272

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             +DY+ +++        ++    +F Q N  +   + +  +  ++    D+ L+ Y G 
Sbjct: 273 YGQDYITDQMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFSELTTDDVVLDAYSGI 328

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L +A+    V  VE+   +VE +R N A N + N   V   ++E  Q   +E    
Sbjct: 329 GTIGLSVAKQVKEVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQNWLKE---- 384

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST- 337
                     +   I VDPPR GL ++ +   V   P  I YISCN  ++ RD+ +    
Sbjct: 385 --------GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQEL 436

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + ++++   D FP T H+EC  LLV+
Sbjct: 437 GYELKKVQPVDLFPQTHHVECVALLVK 463


>gi|332361995|gb|EGJ39797.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK49]
          Length = 466

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 160/389 (41%), Gaps = 46/389 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +              +   +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKIC 161
           + +    + +V L+  R       +   RL +A  A K  +Q I             +  
Sbjct: 216 HYSG---EIMVILVTTRPKIFRVEQLMERLTEAFPAIKSIMQNINDQPGNAIFGKDWRTL 272

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             ++Y+ +++        ++    +F Q N  +   + +  +  ++    D+ L+ Y G 
Sbjct: 273 YGQNYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGI 328

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L +A+   +V  VE+   +VE ++ N A N + N   V   ++E  Q   +E    
Sbjct: 329 GTIGLSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQNWLKE---- 384

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST- 337
                     +   I VDPPR GL ++ +   V   P  I YISCN  ++ RD+ +    
Sbjct: 385 --------GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQEL 436

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + ++++   D FP T H+EC VLL RK 
Sbjct: 437 GYELKKVQPVDLFPQTHHVECVVLLQRKK 465


>gi|322807691|emb|CBZ05266.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402
           065]
          Length = 467

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 145/387 (37%), Gaps = 37/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              +    Y+ QL  K  R+   +      ++        I    P  YR + +  +  +
Sbjct: 85  GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107
             ++    +  +T E   +               +I   M++   +   E   +  +  I
Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKYNISAYNEETGKGFIRHI 204

Query: 108 DYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
               +  ++ ++ +I     ++     E    +       K  IQ I    KT + L   
Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFSNIKSIIQNINT-KKTNVILGEK 263

Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
            +     + +T       +     SF Q N      + +  L        + + + YCG 
Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL L++   +V AVEI K +++ A+ N   N ++N +     S+E            
Sbjct: 324 GTISLFLSQKAKKVYAVEIIKEAIDNAKDNAKENKIDNAEFFVGKSEEV----------- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337
            + D+     +   + VDPPR G +   +  + A     I Y+SC+P +L RDL IL+  
Sbjct: 373 -IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIAYVSCDPGTLARDLGILNEL 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  +++   D FP T H+EC V + R
Sbjct: 432 GYETKKVQPVDMFPQTSHVECVVRIER 458


>gi|307688528|ref|ZP_07630974.1| RNA methyltransferase, TrmA family protein [Clostridium
           cellulovorans 743B]
          Length = 462

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 156/394 (39%), Gaps = 46/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---------QIFRSEPIHYRMRAEFHIW 52
              L    Y+ QL  K  R++  +      +L          +    P  YR + +  + 
Sbjct: 85  GCQLQHLSYKGQLEFKKSRVQDCIERIGGFDLSEDNIQLHETLGMENPYRYRNKVQLPVG 144

Query: 53  HDGDDLYHIMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEP--------LLR 101
              +D+    + Q++   + ++        +  +  ++ + M   +++P        +++
Sbjct: 145 GTVEDVKIGFYSQRSHNIIDMESCNIQFEEADTVVDIVKQWMQENKIQPYNEETHTGIVK 204

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             + +  +    +D+ +V ++ +             L+D+ +     +Q +    KT + 
Sbjct: 205 HIMVRKAF---NNDELMVVVVTNGKSLPKKEILIKELQDSFNNLVSVVQNVND-KKTNVV 260

Query: 162 LDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           L  D    +  + ++       +     SF Q N      +    L    G+ G+  + +
Sbjct: 261 LGLDNVTLFGKDTISDYIGEFKFNISPLSFFQVNPVQTEVLYNKALE-YAGLTGNEVVFD 319

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  SL L++   +V  VEI + ++E A  N   N ++N +      ++    +  
Sbjct: 320 AYCGTGTISLFLSKKASKVYGVEIIEAAIENANINAKENKIDNAEFFVGKCEDVIPKLIA 379

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333
           +              +   + VDPPR G + + +  +   +   I+Y+SC+P +L RDL 
Sbjct: 380 D------------GVKADVVVVDPPRKGCEKSLLDALVSMSPERIVYVSCDPGTLARDLR 427

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
           IL    + ++ +   D FP T H+E  VL+ RK 
Sbjct: 428 ILCDMGYDLKEVQPVDMFPETGHVESVVLITRKD 461


>gi|291166646|gb|EFE28692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Filifactor alocis ATCC
           35896]
          Length = 543

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 153/393 (38%), Gaps = 40/393 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56
              ++   Y++QL  K   + + M      +L      I    P  YR + ++ +    +
Sbjct: 83  GCQIMEMDYQEQLLMKQHIVEENMKRIGGLDLIHVLPVIGMKHPYRYRNKGQYPVAIQNN 142

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKLF 105
            +    +  ++ + + ++  +    + N              I +      +  LR  + 
Sbjct: 143 TVVSGFYKVRSHDIVPVNDCILQQEISNTAVTIIRNFAQKKGISVYNETSHQGNLRRIVV 202

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           ++ + T Q    +VT      + + L    ++    L   +   + +        +  I 
Sbjct: 203 KVGFETKQVMIVLVTKERKFPHRKELLTELQQQIPNLTTIVQNIQPKPSNTVMGKENIIW 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
                + + L      L +     SF Q N      +    L  A    +  +++LYCG 
Sbjct: 263 FGDGTIYDTL----NGLTFEISPLSFYQVNPIQTEVLYNTALKLANLSGRETVIDLYCGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL L+R+  +V  VEI + ++  A+ N + N ++NV+ +   S++    + +     
Sbjct: 319 GTISLFLSRNAKKVYGVEIVEDAILDAKKNASHNQIDNVEFICGKSEDVLPQLYK----- 373

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337
                         + +DPPR G D+  + ++     P I+YISCN  +L RD+ +L   
Sbjct: 374 -------KGICADIVMLDPPRKGCDETLLHVISEMNVPRIVYISCNSATLARDMKLLHEL 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
            +T + +   D F +T H+EC VLL +     H
Sbjct: 427 GYTADTVQPVDMFCHTMHVECVVLLSKLDVDKH 459


>gi|329769944|ref|ZP_08261342.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
           M325]
 gi|328837548|gb|EGF87174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
           M325]
          Length = 445

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 159/387 (41%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
              L+   YE+QL  K  +++ +M       ++++       +  HYR ++   +    +
Sbjct: 75  GANLVHMSYEEQLRFKTKKVQNVMNKTLGQNSVEVLETLGMKDGYHYRNKSVIPVQKVDN 134

Query: 57  DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105
           ++    +  ++ + + I+                  LI  + + +      +  +R  +F
Sbjct: 135 EVKMGYYKPRSHDVVNIEKCFIQYDEHNKLMNYTRDLIAEMNLSIYDEKTHKGAIRHIMF 194

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICL 162
           + +   ++    I+       LD   +   E   R+   +     +   +   +KT+   
Sbjct: 195 RTNSNKTEIMVGIIVNEKFPGLDKFVKKITEFDSRIISVMLNTNNKKTNVIFGDKTENLY 254

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            +DY+ + L      + ++    SF Q N      +    L  A       +++ YCG G
Sbjct: 255 GKDYITDTLG----GIEFKISLRSFYQVNPIQTEVLYSKALELAKLNQDDTIIDAYCGIG 310

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL  A+   +V  +EI + +V  AR N   N++ NV+ +   S++             
Sbjct: 311 TISLFAAQKVKKVYGIEIVEAAVLDARENAKNNNITNVEFLLGKSEDV------------ 358

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338
           +KD+     +   + VDPPR G +++ +  + +     I+Y+SCNP +L RD+ I+    
Sbjct: 359 IKDLISKDVQIDAVIVDPPRKGCEESFLRDLASMGIEKIVYVSCNPATLARDMEIMRGLG 418

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP T H+E   LLV++
Sbjct: 419 YKLGAVQPVDMFPGTYHVEAVSLLVKE 445


>gi|94992657|ref|YP_600756.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94546165|gb|ABF36212.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 464

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 148/382 (38%), Gaps = 40/382 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 99  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N A N + N   V  +++       ++            
Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 382

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I+YISCNP ++ RD+       + + ++ 
Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKIIYISCNPATMARDIKRYQELGYKLTKVQ 442

Query: 346 LFDQFPYTRHMECGVLLVRKPS 367
             D FP T H+E  VL+ +K S
Sbjct: 443 PVDLFPQTHHVETIVLIQKKNS 464


>gi|302873306|ref|YP_003841939.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
 gi|302576163|gb|ADL50175.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
          Length = 472

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 156/394 (39%), Gaps = 46/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---------QIFRSEPIHYRMRAEFHIW 52
              L    Y+ QL  K  R++  +      +L          +    P  YR + +  + 
Sbjct: 95  GCQLQHLSYKGQLEFKKSRVQDCIERIGGFDLSEDNIQLHETLGMENPYRYRNKVQLPVG 154

Query: 53  HDGDDLYHIMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEP--------LLR 101
              +D+    + Q++   + ++        +  +  ++ + M   +++P        +++
Sbjct: 155 GTVEDVKIGFYSQRSHNIIDMESCNIQFEEADTVVDIVKQWMQENKIQPYNEETHTGIVK 214

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             + +  +    +D+ +V ++ +             L+D+ +     +Q +    KT + 
Sbjct: 215 HIMVRKAF---NNDELMVVVVTNGKSLPKKEILIKELQDSFNNLVSVVQNVND-KKTNVV 270

Query: 162 LDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           L  D    +  + ++       +     SF Q N      +    L    G+ G+  + +
Sbjct: 271 LGLDNVTLFGKDTISDYIGEFKFNISPLSFFQVNPVQTEVLYNKALE-YAGLTGNEVVFD 329

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  SL L++   +V  VEI + ++E A  N   N ++N +      ++    +  
Sbjct: 330 AYCGTGTISLFLSKKASKVYGVEIIEAAIENANINAKENKIDNAEFFVGKCEDVIPKLIA 389

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333
           +              +   + VDPPR G + + +  +   +   I+Y+SC+P +L RDL 
Sbjct: 390 D------------GVKADVVVVDPPRKGCEKSLLDALVSMSPERIVYVSCDPGTLARDLR 437

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
           IL    + ++ +   D FP T H+E  VL+ RK 
Sbjct: 438 ILCDMGYDLKEVQPVDMFPETGHVESVVLITRKD 471


>gi|224438395|ref|ZP_03659322.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313144837|ref|ZP_07807030.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313129868|gb|EFR47485.1| tRNA (uracil-5-)-methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 395

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 205/386 (53%), Gaps = 22/386 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML------AFQVPNLQIFRSEPIHYRMRAEFHIWHDG 55
            G  L   YE+QL  K+ + +Q          F   NL +  S    +R RAEF  + + 
Sbjct: 10  GGCELDLAYEKQLESKLKQTQQEFSSLFSSNGFSSANLSVHNSVEWGFRARAEFRFYTEQ 69

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QS 114
           + ++  M +++   R  I        +I   M  ++ ++  +  LR K++  ++L + +S
Sbjct: 70  NRIHFAMSNREKNHRTPITQCPILLPIIQKAMPLVIESLEADETLRTKVYACNFLANIES 129

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALH-ARKYQIQLIGRANKTKICLDR-DY---VDE 169
            + I++LIYH+ LD  W + A  +RD LH A      +IGRA   KI +   DY   V E
Sbjct: 130 QEIIISLIYHKRLDSIWEQKAQNMRDRLHTALNATAHIIGRAKNQKILVGDFDYDSCVRE 189

Query: 170 RLTVAGRT-----LIYRQIENSFTQPNAGINVHMLEWVL----AATKGIQGDLLELYCGN 220
            L +   +       + + E+SF+QPN  IN  MLE+V+    A       D+LELYCG 
Sbjct: 190 SLRLFADSKQKQNYTFFKQESSFSQPNPFINTKMLEFVITHLKALYPQPDNDMLELYCGG 249

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNFS+ L+  F ++LA E+ K ++   + N+  N   N+  VR+++ E   A+  EREF 
Sbjct: 250 GNFSIALSGVFRQILATEVVKSAISLLQQNMEQNFCENITPVRLNALETQVALSGEREFF 309

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339
           RL+ IDI  + F  + +DPPRSG+++   +  +Q +  I+Y+SC P +L +DL  L  +H
Sbjct: 310 RLRGIDIKRFSFDCVLIDPPRSGVNELKILHFLQQFNTIVYVSCKPHTLLQDLQTLIQSH 369

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            I    LFDQFP+T H EC V+L +K
Sbjct: 370 NILHFGLFDQFPHTHHRECIVILRQK 395


>gi|290894402|ref|ZP_06557365.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
 gi|290556063|gb|EFD89614.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
          Length = 459

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 143/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPVKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               LI    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLIEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++      +E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + I  +   D FP T H+E  VLL  K 
Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458


>gi|291545363|emb|CBL18471.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5]
          Length = 453

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 144/389 (37%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWH-DG 55
              L    YEQQL  K  ++R  +              +   +P HYR +A+F +     
Sbjct: 81  GCQLQALSYEQQLKFKEKKVRGHLERIGGFQNLDMEPIMGMEDPYHYRNKAQFPVGKNKD 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
             +    +  +T   +     + G              +    ++       + L+R  +
Sbjct: 141 GKIITGFYAGRTHSIIDNRECILGVKQNKEVLDRVIGHMEKYHVQPYDEATGKGLVRHIM 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKIC 161
            +  + T +    ++        + A  E    + +          +   +   ++ ++ 
Sbjct: 201 IRYGFHTDEMMVCLILNGDKIPAEKALVESLCEIPEMTSITINVNKKRNNVILGDQLRLL 260

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
             + Y+ + +      + Y+    SF Q N      +    L    G+ G+  + +LYCG
Sbjct: 261 WGQSYIMDSIG----DISYQISPLSFFQVNPIQTEKLYGKALE-YAGLTGNETVWDLYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+    V  VEI   +++ AR N   N + NV+     ++E       +   
Sbjct: 316 IGTISLFLAQKAKFVRGVEIVPQAIDNARENAKLNGIENVEFFVGKAEEVLPRGYEK--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS- 336
                   +      I VDPPR G D+  +  +       ++Y+SC+  +L RDL +L  
Sbjct: 373 --------NGVYADVIVVDPPRKGCDEVLLNTILKMKPERVVYVSCDSATLARDLKVLCA 424

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + + R++  D FP   H+E   LL RK
Sbjct: 425 EDYELVRVSTTDMFPQGVHVETVCLLSRK 453


>gi|295702575|ref|YP_003595650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
           DSM 319]
 gi|294800234|gb|ADF37300.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
           DSM 319]
          Length = 461

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 151/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-------QVPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K D + Q            +     I   +P  YR +++F +  D
Sbjct: 88  GCQLQHLSYEGQLESKRDIVLQAFERHSSLKKVEEKTRQTIGMEDPWGYRNKSQFQVGVD 147

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPG-------SLLINALMIEMMATIRLEPLLRAKLFQI 107
              +   ++   +   + I+            +  I  ++ ++   I  E   R  +  I
Sbjct: 148 KQKVIAGLYGLNSHRLIDIENCPIQHGATNHVTKEIKRILQDLQIPIYNERKRRGIVRTI 207

Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
                 ++ +  V LI  +            ++  L   K  +Q +    KT +      
Sbjct: 208 VSRVGFETGEVQVVLITAKQEIPKKELVIKEIKRRLPEVKSLVQNVN-GQKTSLIFG--- 263

Query: 167 VDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217
            DE  T++G+++I        +     +F Q N    V + + V  AA       +++ Y
Sbjct: 264 -DETFTLSGKSVIQETLGDISFELSARAFFQLNPLQTVKLYDEVKKAAALTGNEKIVDAY 322

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L LA+    +  ++  + S+  AR N   +   +   V  +++++     +E 
Sbjct: 323 CGVGTIGLWLAKDAKEIRGMDTIEESIVDARKNAQDHGFEHATYVTGAAEKWMPQWVKE- 381

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                       ++   I VDPPR+G DD  +  +       ++Y+SCNP +L +D+  L
Sbjct: 382 -----------GWKPDVIVVDPPRTGCDDKLLKTILQVKPKKVVYVSCNPSTLAKDVQQL 430

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           S  + ++ +   D FP+T H+E  V L  K 
Sbjct: 431 SKAYHVDYIQPVDMFPHTAHVENVVSLTLKK 461


>gi|325569856|ref|ZP_08145850.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156979|gb|EGC69147.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
           ATCC 12755]
          Length = 458

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 152/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              L    Y++QL  K D L+Q +  F+    Q F          P HYR +A+F + ++
Sbjct: 84  GCQLQHLVYDKQLDFKKDLLKQALEKFKPKGYQQFELRDTLGMDVPWHYRNKAQFQLRYN 143

Query: 55  G--DDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                +   +++ ++   + ID  +               L+N   I +    +   +LR
Sbjct: 144 SQTKRIEAGLYEMESHRLVAIDDCLVQEQDTQKVINGIVQLLNKYQIPIYDERKNSGILR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + +I   T +     +T        +A  RE   RL      +   + +   +    +
Sbjct: 204 TLMVRIGIATGEVQVVFITNSVKLPQKNALIREINQRLPQVVSIMQNVQNKKTSVVMGEE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++ERL      L +     +F Q N      +  E V A        +++ 
Sbjct: 264 TIHLWGKEAIEERL----NELTFDLSARAFFQLNPQQTSVLYQEGVKALDLSKNETVVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A +   V  ++I   ++E A+ N       N      +++E       E
Sbjct: 320 YCGVGTIGLSVAPYAKEVRGMDIIPQAIENAQENAHRIGAQNTHYETGTAEELLPKWFNE 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                        ++  +I VDPPR+GLD+  +  +   P   ++YISCN  +L RDL  
Sbjct: 380 ------------GFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLARDLVQ 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L+    +E L   D FP T   E  V L RK
Sbjct: 428 LAKVFHVEYLQSVDMFPQTARCEVVVKLTRK 458


>gi|94988772|ref|YP_596873.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94542280|gb|ABF32329.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS9429]
          Length = 462

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 149/380 (39%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 99  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N A N + N   V  +++       ++            
Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 382

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I+YISCNP ++ RD+       + + ++ 
Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKIIYISCNPATMARDIKRYQELGYKLTKVQ 442

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC VLL+++
Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462


>gi|253579594|ref|ZP_04856863.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849095|gb|EES77056.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 545

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 143/386 (37%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
              L    Y+QQL  K ++++  +              I   E  HYR +A+F +  +  
Sbjct: 81  GCQLQALSYDQQLVFKTNKVKGHLERIGGFTDIPMEPIIGMDELFHYRNKAQFPVGRNKE 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
             +    +  +T   +       G              +    IE       + L+R  L
Sbjct: 141 GKIVTGFYAGRTHNIIENRDCALGVAENKEVLDRVIAHMEKYGIEPYNEATGKGLVRHVL 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKIC 161
            +  Y T +    ++        ++   +    +            +   +    + ++ 
Sbjct: 201 IRYGYFTKEVMVCLILNGNKIPKEEQLVKSLCEIPGMTSITINVNKKHSNVILGEEIRLL 260

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             ++Y+ +R+      + Y+    SF Q N      +    L  A    Q  + +LYCG 
Sbjct: 261 WGQEYITDRIG----DISYQISPLSFYQVNPMQTQKLYAKALEYADLHGQETVWDLYCGI 316

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LA+    V  VEI   ++E A+ N   N + N +     ++E      ++    
Sbjct: 317 GTISLFLAQKAKFVRGVEIVPAAIENAKENAKLNGLENTEFFVGKAEEVLPREYKK---- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST- 337
                  +      I VDPPR G D+  +  MV+  P  I+Y+SC+  +L RDL  L   
Sbjct: 373 -------NGVYADVIVVDPPRKGCDETLLETMVEMNPDRIVYVSCDSATLARDLKYLCER 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            + + ++   DQF  T H+E  VLL 
Sbjct: 426 GYELRKVCPVDQFGMTVHVETVVLLS 451


>gi|299820563|ref|ZP_07052453.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
 gi|299818058|gb|EFI85292.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
          Length = 457

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 148/390 (37%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQI----FRSEPIHYRMRAEFHIWH- 53
              L    Y+ QL  K D L Q +     F +  L I       EP  YR +++F   + 
Sbjct: 84  GCQLQHISYQAQLELKRDILIQALEKHTKFNIGKLPIKDVIGMDEPFRYRNKSQFQTRYS 143

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRA 102
           +  ++   ++   + + + ID  +                +  L I +    +   ++R 
Sbjct: 144 EDGNVVAGLYSANSHDLVPIDDCLVQDPATVAITNTVKEALQELNIPIYNEKQNSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            + +  + T QS   ++T    L   R L +  ++    +   +     Q   +    +T
Sbjct: 204 IVVRTGFKTGQSQLVLITNSKKLPKKRALLEIIKQKHPEIISIMQNVNTQKSSLIFGEET 263

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELY 217
                    +E +  A   + Y     +F Q N      +   V  A        +++ Y
Sbjct: 264 MHLDG----EETMQEALGEMKYDLSARAFFQLNPVQTEKLYNEVRRALNLSGTERIIDAY 319

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L LA     V  +++   ++E A++N A N V N       ++        E 
Sbjct: 320 CGAGTIGLSLAGQVREVRGMDVIPEAIEDAKHNAALNQVTNSYYEVGKAETILPKWLEE- 378

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                       ++   + +DPPR G D + +  +   A   I+Y+SCNP +L RDL++ 
Sbjct: 379 -----------GFQADAVILDPPRVGCDQSLIRALLDYAPKQIVYVSCNPSTLARDLALF 427

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + I  +   D FP T H+E   ++ ++
Sbjct: 428 SKEYQINSIQPVDMFPQTAHVETVTVMQKR 457


>gi|195977835|ref|YP_002123079.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974540|gb|ACG62066.1| 23S rRNA-methyltransferase [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 453

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 138/381 (36%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y QQL  K  +++  +              I    P  YR +A+  +      L    F 
Sbjct: 88  YPQQLLFKQKQVQDSLYKIAGISNVEVKETIGMEYPYAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + E + I  F      I+ L            I+         L+R  + +  + + +
Sbjct: 148 KHSHELVPISDFYIQDKEIDRLIAFTRDLLRRFDIKPYDEKEQSGLIRHLVVRRGHYSGE 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDE 169
               +VT    R       +   RL     A    +Q I     T +       R Y  E
Sbjct: 208 IMLVLVT---TRPKIFRINQMIDRLVAEFPAITSILQNIND-KPTNVIFGKAFTRLYGKE 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +T       Y     SF Q N  +   + +  +  ++    D+ ++ Y G G   L  A
Sbjct: 264 TITDTILGNQYCISAQSFYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A  N A N + N   V  S++       +E            
Sbjct: 324 KEVKAVYGVEVIEAAVRDAEKNAALNGITNAHYVADSAENAMANWCQE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +    A     I YISCNP ++ RD+       + ++++ 
Sbjct: 372 GIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMARDIKRYEELGYKLQKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D FP T H+EC VLL R  
Sbjct: 432 PVDLFPMTHHVECVVLLQRSK 452


>gi|27468500|ref|NP_765137.1| RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC
           12228]
 gi|27316047|gb|AAO05181.1|AE016749_127 RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC
           12228]
          Length = 472

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 72/388 (18%), Positives = 138/388 (35%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K +++  +               I    P  YR +++  +     
Sbjct: 98  GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNKSQIPVGQSNS 157

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +      + Q++ + + +D  +                +N L I +        L+R  +
Sbjct: 158 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 217

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T +     VT         LL +  ++    +             +    ++  
Sbjct: 218 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 277

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++++L+     + Y   + SF Q N+     + +  L   +    + +L+ YCG
Sbjct: 278 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 333

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N + N       +++     +     
Sbjct: 334 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 389

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+ 
Sbjct: 390 --------QGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 441

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP T H+E   L VRK
Sbjct: 442 QYELVEITPVDMFPQTTHIETVALFVRK 469


>gi|16800882|ref|NP_471150.1| hypothetical protein lin1815 [Listeria innocua Clip11262]
 gi|50401775|sp|Q92AV4|Y1815_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1815
 gi|16414317|emb|CAC97046.1| lin1815 [Listeria innocua Clip11262]
          Length = 457

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 144/389 (37%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYNAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIIRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N ++NV      +++      +E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIDNVYYEVGKAEDVLPKWVKE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLQVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + I  +   D FP T H+E   LL R+
Sbjct: 429 KKYQIRYMQPVDMFPQTAHVETVTLLQRR 457


>gi|168181980|ref|ZP_02616644.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
 gi|237796828|ref|YP_002864380.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           Ba4 str. 657]
 gi|182674796|gb|EDT86757.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
 gi|229263636|gb|ACQ54669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           Ba4 str. 657]
          Length = 461

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 144/387 (37%), Gaps = 37/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              +    Y+ QL  K  R+   +      ++        I    P  YR + +  +  +
Sbjct: 85  GCQVQHYNYKAQLDFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107
             ++    +  +T E   +               +I   M++   +   E   +  +  I
Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204

Query: 108 DYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
               +  ++ ++ +I     ++     E    +       K  IQ +    KT + L   
Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFSNIKSIIQNVNT-KKTNVILGEK 263

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               +  + +T       +     SF Q N      + +  L        + + + YCG 
Sbjct: 264 CITLWGKDAITDYIDKFKFNISPLSFFQVNPVQTEVLYKKALEFADLKGEEIVFDAYCGT 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL L++   +V  VEI K +++ A  N   N+VNN +     S+E            
Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAEDNAEENNVNNTEFFVGRSEEV----------- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337
            + D+     +   + VDPPR G +   +  + A     I+Y+SC+P +L RDL IL+  
Sbjct: 373 -IPDLINKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDLGILNGL 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  + +   D FP T H+E  VL+ R
Sbjct: 432 GYETKEVQPVDMFPQTSHVETIVLIQR 458


>gi|308172666|ref|YP_003919371.1| RNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307605530|emb|CBI41901.1| putative RNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|328552427|gb|AEB22919.1| RNA methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328910776|gb|AEB62372.1| putative RNA methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 466

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 152/395 (38%), Gaps = 48/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL----QIFRSEPIHYRMRAEFHIWH- 53
              L    Y QQL EK D + Q +     F V  +     I    P +YR +++F +   
Sbjct: 90  GCQLQHLAYSQQLREKRDIVIQSLERHTRFNVEEMNIKETIGMDNPWNYRNKSQFQVGRS 149

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRA 102
               +   ++   + + + I   +      N              + +      +  +R 
Sbjct: 150 QSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNERTKKGDVRT 209

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN------ 156
            + ++ +   ++ +  V L+  +       E    +++ L   K  IQ I  A       
Sbjct: 210 IVTRVGF---ETGEVQVVLVTAKETLPNKDEIVKAIQNRLPEVKSIIQNINGARTSVIFG 266

Query: 157 -KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLL 214
            KTK       + E L      + +     +F Q N    V + + V  AA    +  ++
Sbjct: 267 DKTKALAGSHAIQEVLG----DVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVV 322

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G   + ++     +  +++ K S++ A+ N   + + N   V  +++ +     
Sbjct: 323 DAYCGVGTIGMWVSSGAKEIRGMDVIKESIDDAKKNAKKHGIKNAAYVTGTAEHWLPKWT 382

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
           +E             +R   + VDPPR+G D   +  ++       +Y+SCNP +L +DL
Sbjct: 383 KE------------GFRPDVVIVDPPRTGCDGTFLDTIKKVKPKRFVYVSCNPSTLAKDL 430

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             LS  + +E +   D FP T H+E    LV K S
Sbjct: 431 QALSKDYRVEYIQPVDMFPQTAHVEAVAKLVLKSS 465


>gi|166030479|ref|ZP_02233308.1| hypothetical protein DORFOR_00140 [Dorea formicigenerans ATCC
           27755]
 gi|166029731|gb|EDR48488.1| hypothetical protein DORFOR_00140 [Dorea formicigenerans ATCC
           27755]
          Length = 467

 Score =  278 bits (712), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 152/395 (38%), Gaps = 37/395 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---------IFRSEPIHYRMRAEFHI 51
            G  + + +Y  QLA K  ++R  +        +         +   EP HYR +A+F I
Sbjct: 81  GGCQIQEMKYGAQLAFKEGKVRGNLERIGEVPTELLDKVMQPIVGMEEPFHYRNKAQFPI 140

Query: 52  WHDGDD-LYHIMFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRL--------EPL 99
             D +  +    +  +T   +        +  +  I  +++  M    +        + L
Sbjct: 141 GTDKEGHIITGFYAGRTHSIIPNTDCALGVAVNQKILEIILHFMENNHISAYDEEKHKGL 200

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRAN 156
           +R  L +  + T +    +V         +   +    +        +       +    
Sbjct: 201 VRHVLIRYGFKTDEIMVCLVINGEKLPHAEKLVDKLCEISGMTSITISVNKAKTNVIMGK 260

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215
           + K+   + Y+ + +      + Y+    SF Q N      +    L  A       + +
Sbjct: 261 EIKLLWGQTYITDYIG----NVKYQISPLSFYQVNPVQTEKLYGLALDYADLNGNETVWD 316

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G  SL LA++  +V  VEI   +++ AR N   N + N +     ++E      R
Sbjct: 317 LYCGIGTISLFLAQNAKQVYGVEIVPQAIDDARNNAKINDITNAEFYVGKAEEVLPGYYR 376

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333
           E +    +     +     I VDPPR G +++ +  +       ++Y+SC+  +L RD+ 
Sbjct: 377 EYQ----ESHGGETAHADVIVVDPPRKGCEESLLQTIVDMQPEKVVYVSCDSATLARDVK 432

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            L  + + ++++   DQFP T H+E    L R  S
Sbjct: 433 FLRESGYELKKITPVDQFPNTVHVEVVCCLHRVNS 467


>gi|308067596|ref|YP_003869201.1| RNA methyltransferase [Paenibacillus polymyxa E681]
 gi|305856875|gb|ADM68663.1| Hypothetical RNA methyltransferase [Paenibacillus polymyxa E681]
          Length = 534

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 152/436 (34%), Gaps = 86/436 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29
              +    YE QL+ K   +  ++                                    
Sbjct: 113 GCQIQHMSYEAQLSWKRQHVVDVLERIGKLSVAMESSEHTAQVLATSADTDGEADIVTTA 172

Query: 30  -------------------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
                              V +  +  SEP  YR +A+  I      L    + + +   
Sbjct: 173 DSAMNADGNADSMSRVHGVVVHPTLGMSEPWRYRNKAQVPIGVTEGGLVGGFYARGSHRI 232

Query: 71  MRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           + ++  +      +            L I          LLR  + +  + T +    +V
Sbjct: 233 VDMNTCLIQDERNDEVVARVKEIGRMLGISAYNEETGRGLLRHVVVKTAFRTGEMMLVLV 292

Query: 120 TLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           T        DAW    RE    +         +   +   ++T++   RD + + +    
Sbjct: 293 TNGRDIPHADAWISSIREHIPHVASICQNVNTKRTNVIFGDETRVLWGRDVIYDYIG--- 349

Query: 176 RTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             + +     SF Q N      +  + V  A    +  +++ YCG G  SL LA+H D+V
Sbjct: 350 -NVQFAISARSFYQVNPVQTEVLYGKTVEYAGLTGKETVIDAYCGIGTISLFLAQHADQV 408

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             VEI K +++ AR N   N + NVK    +S++   A +                    
Sbjct: 409 YGVEIVKEAIDDARSNALLNEMRNVKFEVGASEDVIPAWKE------------QGITADV 456

Query: 295 IFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351
           I VDPPR G D   +G +       ++Y+SCNP +L RDL IL    ++   +   D FP
Sbjct: 457 IVVDPPRKGCDPRLLGTILEMKPERVVYVSCNPSTLARDLRILEDGGYSTVEVQPVDMFP 516

Query: 352 YTRHMECGVLLVRKPS 367
           +T H+E   L+VR  +
Sbjct: 517 HTTHVENVALIVRSDT 532


>gi|84029598|sp|Q8CRU6|Y1582_STAES RecName: Full=Uncharacterized RNA methyltransferase SE_1582
          Length = 456

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 72/388 (18%), Positives = 138/388 (35%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K +++  +               I    P  YR +++  +     
Sbjct: 82  GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNKSQIPVGQSNS 141

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +      + Q++ + + +D  +                +N L I +        L+R  +
Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 201

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T +     VT         LL +  ++    +             +    ++  
Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++++L+     + Y   + SF Q N+     + +  L   +    + +L+ YCG
Sbjct: 262 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N + N       +++     +     
Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP T H+E   L VRK
Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRK 453


>gi|154685279|ref|YP_001420440.1| YfjO [Bacillus amyloliquefaciens FZB42]
 gi|154351130|gb|ABS73209.1| YfjO [Bacillus amyloliquefaciens FZB42]
          Length = 466

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 152/395 (38%), Gaps = 48/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL----QIFRSEPIHYRMRAEFHIWH- 53
              L    Y QQL EK D + Q +     F V  +     I    P +YR +++F +   
Sbjct: 90  GCQLQHLAYTQQLREKRDIVIQSLERHTRFNVEEMNIKDTIGMDNPWNYRNKSQFQVGRS 149

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRA 102
               +   ++   + + + I   +      N              + +      +  +R 
Sbjct: 150 QSGSIIAGLYGLDSHKIVPIKECIVQHPATNKTTGIVRRILEKHNVSVYNERTKKGDVRT 209

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN------ 156
            + ++ +   ++ +  V L+  +       E    +++ L   K  IQ +  A       
Sbjct: 210 IVTRVGF---ETGEVQVVLVTAKETLPNKDEIVKAIQNRLPEVKSIIQNVNGARTSVIFG 266

Query: 157 -KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLL 214
            KTK       + E L      + +     +F Q N    V + + V  AA    +  ++
Sbjct: 267 DKTKALAGSHAIQEVLG----DVSFELSARAFFQLNPEQTVKLYDEVKQAAQLTGKEKVV 322

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G   + ++     +  +++ K S++ A+ N   + + N   V  +++ +     
Sbjct: 323 DAYCGVGTIGMWVSSGAKEIRGMDVIKESIDDAKKNAKKHGIKNAAYVTGTAEHWLPKWT 382

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
           +E             +R   + VDPPR+G D   +  ++       +Y+SCNP +L +DL
Sbjct: 383 KE------------GFRPDVVIVDPPRTGCDRTFLDTIKKVKPKRFVYVSCNPSTLAKDL 430

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             LS  + +E +   D FP T H+E    LV K S
Sbjct: 431 QTLSKDYRVEYIQPVDMFPQTAHVEAVAKLVLKSS 465


>gi|327438698|dbj|BAK15063.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
          Length = 458

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 151/391 (38%), Gaps = 42/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-------NLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K D + Q    +             I    P HYR +++F +  +
Sbjct: 84  GCQLQHMTYEAQLMNKRDIVVQAFEKYAKEIGQTAEIRPTIGMDNPWHYRNKSQFQVRKE 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
           G  +Y  +F + T + + I+  +               ++  L I +     L  L+R  
Sbjct: 144 GKRVYAGLFTEGTNQLLNINDCLVQHPVTSKITVATRKILQKLNIPIYDGKTLNGLVRTI 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +    + ++   +VT    R       E   R++    +     Q + R  KT +   
Sbjct: 204 VVRTGMRSGETQVCLVT---TRRELPHKEELIERIKKIDPSIVSITQNVNR-EKTSLIFG 259

Query: 164 RDY----VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D       E +        +     +F Q N    VH+  E   AA    + ++++ YC
Sbjct: 260 PDTFILDGKEAIHEKLGEFAFDLSTRAFFQLNPEQTVHLYNEIKKAAALTGKENVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN-HVNNVKIVRMSSKEFTQAMRRER 277
           G G   + LA     V  ++    ++  A+YN   N ++ +V+    S+ ++     +E 
Sbjct: 320 GVGTIGMWLAEGAREVRGMDNVDEAIADAKYNARTNDNLQHVRFFPGSADKWLFRWSKED 379

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL 335
                       YR   I VDPPR+GL+   +  V        +Y SCNP +L RDL  L
Sbjct: 380 ------------YRPDVICVDPPRTGLEPGFIRTVLKIKPKLFVYTSCNPSTLARDLKEL 427

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           S ++ +E +   D FP T  +EC V L  K 
Sbjct: 428 SKSYNVEYIQPVDMFPQTAQVECVVKLTLKK 458


>gi|257865847|ref|ZP_05645500.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC30]
 gi|257872181|ref|ZP_05651834.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC10]
 gi|257799781|gb|EEV28833.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC30]
 gi|257806345|gb|EEV35167.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC10]
          Length = 458

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 152/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              L    Y++QL  K D L+Q +  F+    Q F          P HYR +A+F + ++
Sbjct: 84  GCQLQHLVYDKQLDFKKDLLKQALEKFKPKGYQQFELRDTLGMDVPWHYRNKAQFQLRYN 143

Query: 55  G--DDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                +   +++ ++   + ID  +               L+N   I +    +   +LR
Sbjct: 144 SQTKRIEAGLYEMESHRLVAIDDCLVQEQDTQKVINGIVQLLNKYQIPIYDERKNSGILR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + +I   T +     +T        +A  RE   RL      +   + +   +    +
Sbjct: 204 TLMVRIGIATGEVQVVFITNSVKLPQKNALIREINQRLPQVVSIMQNVQNKKTSVVMGEE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++ERL      L +     +F Q N      +  E + A        +++ 
Sbjct: 264 TIHLWGKEAIEERL----NELTFDLSARAFFQLNPQQTSILYQEGLKALDLSKNETVVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A +   V  ++I   ++E A+ N       N      +++E       E
Sbjct: 320 YCGVGTIGLSVAPYAKEVRGMDIIPQAIENAQENARRIGAQNTHYETGTAEELLPKWFNE 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                        ++  +I VDPPR+GLD+  +  +   P   ++YISCN  +L RDL  
Sbjct: 380 ------------GFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLARDLVQ 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L+    +E L   D FP T   E  V L RK
Sbjct: 428 LAKVFHVEYLQSVDMFPQTARCEVVVKLTRK 458


>gi|282874553|ref|ZP_06283438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis SK135]
 gi|281296692|gb|EFA89201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis SK135]
 gi|329734822|gb|EGG71127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis VCU028]
          Length = 456

 Score =  278 bits (711), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 138/389 (35%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K +++  +               I    P  YR +++  +     
Sbjct: 82  GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMDNPWRYRNKSQIPVGQSNS 141

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +      + Q++ + + +D  +                +N L I +        L+R  +
Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 201

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T +     VT         LL +  ++    +             +    ++  
Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++++L+     + Y   + SF Q N+     + +  L   +    + +L+ YCG
Sbjct: 262 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N + N       +++     +     
Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+ 
Sbjct: 374 --------QGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + +  +   D FP T H+E   L VRK 
Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRKD 454


>gi|55820468|ref|YP_138910.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG
           18311]
 gi|55736453|gb|AAV60095.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG
           18311]
          Length = 454

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 147/386 (38%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L+  +Y++QL  K D L Q +  F+  N +       I   +P HYR + +F I   
Sbjct: 81  GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
           G  +   +F + +   + ID  +    L  A+M ++   +    L          +R  +
Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVM 200

Query: 105 FQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    ++Q     VT   +    L          +        Y    +    +T+I  
Sbjct: 201 IRRALGSNQVQLIFVTSNPVSLTKLVKELTLSYPEIVTVAVNYNYSKSSVIYGQETEIIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221
            +D + E +      L       +F Q N      +    + A        L++ YCG G
Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYGQAVEALEVDKSEHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A+    +  ++I   ++E AR N  +  ++N       +++      +E     
Sbjct: 317 TIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|303240517|ref|ZP_07327033.1| RNA methyltransferase, TrmA family [Acetivibrio cellulolyticus CD2]
 gi|302591919|gb|EFL61651.1| RNA methyltransferase, TrmA family [Acetivibrio cellulolyticus CD2]
          Length = 552

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/390 (21%), Positives = 150/390 (38%), Gaps = 35/390 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             +L     +  L  K + + + +         + +  I   +P++YR +A++ +    D
Sbjct: 88  GCSLQHMSTQAALRFKTELVTENIRRIGKLQDVIVHDTIGMQKPLNYRNKAQYPVGKLND 147

Query: 57  DLYHIMFDQQTKERMRIDYFMPGS-------LLINALMIEMMATIRLEPLLRAKLFQIDY 109
           +L    + +++ + +     M          L++   + E   ++  E   +  +  +  
Sbjct: 148 ELKVGFYAKKSHDIIDSPICMIQHSVSDRAKLIVKEFLKENNISVYDETTGKGLVRHVMT 207

Query: 110 LTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T   + + ++ L+ +        +    L   L   K  I  I   N T I L      
Sbjct: 208 RTGFNTGEIMIVLVLNGKSLPEQDKLVKLLTGELPEIKSIILNINTMN-TNIILGTRNIV 266

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223
            + +E +T       ++    SF Q N      +    L  A    Q  + +LYCG G  
Sbjct: 267 IFGEETITDYIGKFKFKISPLSFFQVNPVQTEVLYNKALEYAGLTGQETVFDLYCGIGTI 326

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL L+    +V  VE+ + +V  A+ N   N V NV+     ++     M          
Sbjct: 327 SLFLSEKTKKVYGVEVVEEAVRDAKVNAGVNGVENVEFFVGEAERVIPEMYS-------- 378

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THT 340
                  +   + VDPPR G D   +  +       I+Y+SCNP +L RDL  L+     
Sbjct: 379 ----KGIKADVVVVDPPRKGCDQVLLETLVSMEPRRIVYVSCNPATLARDLGFLTERGFK 434

Query: 341 IERLALFDQFPYTRHMECGVLLV-RKPSGW 369
           +  +   D FP+T H+E  VLL  +KPS  
Sbjct: 435 VLEVQPVDMFPWTAHVETVVLLSQQKPSDK 464


>gi|197302873|ref|ZP_03167925.1| hypothetical protein RUMLAC_01602 [Ruminococcus lactaris ATCC
           29176]
 gi|197298110|gb|EDY32658.1| hypothetical protein RUMLAC_01602 [Ruminococcus lactaris ATCC
           29176]
          Length = 555

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 145/391 (37%), Gaps = 37/391 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51
            G  + +  YE+QLA K  ++R  +             V        EP  YR +A+F  
Sbjct: 79  GGCQIQEMSYERQLAFKEQKIRGNLERIGGFDRGKIDAVMEPVEGMDEPFRYRNKAQFPF 138

Query: 52  WHDG-DDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPL 99
             D   +     +  +T + +     + G      +            +        + L
Sbjct: 139 GTDKEGNPVTGFYAGRTHDIIANTECILGVEQNREILEIILQYMKENCVAAYDEKSGKGL 198

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRAN 156
           +R  L +  + T +    +V         D   +   +L        +   +   +   N
Sbjct: 199 IRHVLIRYGFTTKEIMVCLVINGTKLPKADRLIKKLTQLEGMTSITLSPNTRRDNVIMGN 258

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215
             ++   + ++ + +      + Y+    SF Q N      +    L  A       + +
Sbjct: 259 SYEVLWGQGFITDYIG----NVKYQISPLSFYQVNPVQTEKLYGLALEYADLKGTETVWD 314

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G  SL LA+   +V  VEI   ++E A+ N   N +NN       ++E       
Sbjct: 315 LYCGIGTISLFLAQKAKQVYGVEIVPQAIEDAKNNAKINEINNAAFYVGKAEEVLPDYYE 374

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333
           E      K       R   I VDPPR G D+  +  +V+  P  ++Y+SC+  +L RDL 
Sbjct: 375 EYA----KTHGGEKARADVIVVDPPRKGCDETLLETIVKMEPEKVVYVSCDSATLARDLK 430

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLV 363
            L    + I ++   DQFP T H+E  VLL 
Sbjct: 431 YLCENGYEIRKVRGVDQFPETVHVETVVLLS 461


>gi|239631838|ref|ZP_04674869.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526303|gb|EEQ65304.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 453

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 161/381 (42%), Gaps = 38/381 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L I  Y  QL  K  +++++     +       I  + P+ YR +A+  +     +L   
Sbjct: 87  LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 146

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + + + I+ F+     I+  ++ +   +R            + ++R  + +  + 
Sbjct: 147 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 206

Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166
           T Q    +V+  +    L D   E  + L +          +   +    K++     DY
Sbjct: 207 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 266

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225
           + ++L  +     ++    SF Q N      + +  + AA    + ++++ Y G G  SL
Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISL 322

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH   V  VE+ +P+V  AR N   NH++NV      ++E  Q  +     N L   
Sbjct: 323 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 376

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                    + VDPPR GLD + +  V     P I+Y+SCNP +L RDL +L+   +T +
Sbjct: 377 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQLLAAFGYTAK 430

Query: 343 RLALFDQFPYTRHMECGVLLV 363
                D FP T+H+E    L 
Sbjct: 431 ETQPVDMFPQTQHIESITALT 451


>gi|329726919|gb|EGG63377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
           epidermidis VCU144]
          Length = 456

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 138/389 (35%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K +++  +               I    P  YR +++  +     
Sbjct: 82  GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMDNPWRYRNKSQIPVGQSNS 141

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +      + Q++ + + +D  +                +N L I +        L+R  +
Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 201

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T +     VT         LL +  ++    +             +    ++  
Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++++L+     + Y   + SF Q N+     + +  L   +    + +L+ YCG
Sbjct: 262 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N + N       +++     +     
Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEYGKAEDVILTWKS---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+ 
Sbjct: 374 --------QGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + +  +   D FP T H+E   L VRK 
Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRKD 454


>gi|227535460|ref|ZP_03965509.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227186870|gb|EEI66937.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 457

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 161/381 (42%), Gaps = 38/381 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L I  Y  QL  K  +++++     +       I  + P+ YR +A+  +     +L   
Sbjct: 90  LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 149

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + + + I+ F+     I+  ++ +   +R            + ++R  + +  + 
Sbjct: 150 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 209

Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166
           T Q    +V+  +    L D   E  + L +          +   +    K++     DY
Sbjct: 210 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 269

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225
           + ++L  +     ++    SF Q N      + +  + AA    + ++++ Y G G  SL
Sbjct: 270 LLDKLLGSE----FQISPVSFYQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISL 325

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH   V  VE+ +P+V  AR N   NH++NV      ++E  Q  +     N L   
Sbjct: 326 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 379

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                    + VDPPR GLD + +  V     P I+Y+SCNP +L RDL +L+   +T +
Sbjct: 380 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQLLAAFGYTAK 433

Query: 343 RLALFDQFPYTRHMECGVLLV 363
                D FP T+H+E    L 
Sbjct: 434 ETQPVDMFPQTQHIESITALT 454


>gi|90962313|ref|YP_536229.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|90821507|gb|ABE00146.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
           UCC118]
          Length = 459

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 156/380 (41%), Gaps = 40/380 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
            Y  QL  K   +  ++    + NL++        P +YR +A+  +      L    F 
Sbjct: 92  SYPAQLKFKRKLVTDLLQKVHLDNLEVADTLGMETPYYYRNKAQVPVREVNGKLEIGFFK 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113
           + + + + +++F+     I+ ++I++   +R+  +           +R  L +  Y + +
Sbjct: 152 RNSHDFVAMEHFLIQDKRIDEILIKVRDILRMSKITAYNEEKHTGMIRHILVRRGYYSHE 211

Query: 114 SDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
           +   +V+ +      D      ++    ++  +         +    KT     +D + +
Sbjct: 212 AMVVLVSRVRKIPNLDQIAFLIQQQCPDVKSVMLNVNPDKTNVILGKKTIKLAGKDTIQD 271

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228
            L      L +     SF Q N      + +  +  A    +  +++ YCG G  SL +A
Sbjct: 272 TL----NGLKFDISAQSFYQVNPQQTEKLYQLAIENAELTGKETVIDAYCGIGTISLNMA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  VEI   ++E A++N + N ++N+      ++ + +  ++             
Sbjct: 328 KFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEKWQK------------Q 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIER-L 344
             +   I VDPPR GL  + +    A     ++Y+SCNP +L RD+   +   + + + +
Sbjct: 376 GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVRDIQEFMELGYQVTKSI 435

Query: 345 ALFDQFPYTRHMECGVLLVR 364
              DQFP T H+E   +L R
Sbjct: 436 QPVDQFPQTTHVESVTVLER 455


>gi|16803743|ref|NP_465228.1| hypothetical protein lmo1703 [Listeria monocytogenes EGD-e]
 gi|224499575|ref|ZP_03667924.1| hypothetical protein LmonF1_07712 [Listeria monocytogenes Finland
           1988]
 gi|224503372|ref|ZP_03671679.1| hypothetical protein LmonFR_12800 [Listeria monocytogenes FSL
           R2-561]
 gi|254829227|ref|ZP_05233914.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|254832408|ref|ZP_05237063.1| hypothetical protein Lmon1_13719 [Listeria monocytogenes 10403S]
 gi|254900792|ref|ZP_05260716.1| hypothetical protein LmonJ_13289 [Listeria monocytogenes J0161]
 gi|254913722|ref|ZP_05263734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           J2818]
 gi|254938109|ref|ZP_05269806.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|50401633|sp|Q8Y6I1|Y1703_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1703
 gi|16411157|emb|CAC99781.1| lmo1703 [Listeria monocytogenes EGD-e]
 gi|258601638|gb|EEW14963.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
 gi|258610721|gb|EEW23329.1| RNA methyltransferase [Listeria monocytogenes F6900]
 gi|293591737|gb|EFG00072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           J2818]
          Length = 459

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++      +E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + I  +   D FP T H+E  VLL  K 
Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458


>gi|328946582|gb|EGG40721.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1087]
          Length = 465

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 160/385 (41%), Gaps = 40/385 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +     + ++++       +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 216 HYSGEIMLILVTTRPKIFRVEQLMERLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +R+        ++    +F Q N  +   + +  +  ++    D+ L+ Y G G  
Sbjct: 276 DYITDRMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N A N + N   V   ++E  Q   +E       
Sbjct: 332 GLSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYVCAPAEEAIQNWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   V   P  I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYRELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++++   D FP T H+EC  LLV++
Sbjct: 440 LKKVQPVDLFPQTHHVECVSLLVKR 464


>gi|169825906|ref|YP_001696064.1| putative RNA methyltransferase [Lysinibacillus sphaericus C3-41]
 gi|168990394|gb|ACA37934.1| Hypothetical RNA methyltransferase [Lysinibacillus sphaericus
           C3-41]
          Length = 462

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 153/390 (39%), Gaps = 41/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    YE+QL EK D + Q +  +  P  +       +    P HYR +++F +  +
Sbjct: 88  GCQLQHMTYEKQLLEKRDIVIQALERYAKPLAETVEVRKTLGMDNPWHYRNKSQFQVRKE 147

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
           G  +Y  +F + + + + I+  +               ++  L I +     L+ L+R  
Sbjct: 148 GKRVYAGLFAEGSNKLLNINDCLVQHPVTSKITVATRKILQKLNITIYDGRTLDGLVRTI 207

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +    T ++   +VT    R       E   R++    +     Q I R  KT +   
Sbjct: 208 VVRTGIRTGETQVVLVT---TRKEIPHLAELITRIKKIDPSIVSIAQNINR-EKTSLIFG 263

Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYC 218
            + +     E +      L +     +F Q N    VH+ + +  AA    +  +++ YC
Sbjct: 264 DETIVLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYDEIKKAAALTGKESVVDAYC 323

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +++   S++ AR N   +   + K    +++      R+E  
Sbjct: 324 GVGTVGLWLADQAAEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLSKWRKE-- 381

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336
                      +    I VDPPR+GL    +  V        +Y SCNP +L +DL  LS
Sbjct: 382 ----------GFTPDVITVDPPRTGLASEFIQTVLKLRPKRFVYTSCNPSTLAKDLQQLS 431

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + +E +   D F  T  +EC   LV K 
Sbjct: 432 KHYHVEYIQPVDMFSQTAQVECVAKLVLKN 461


>gi|284802149|ref|YP_003414014.1| hypothetical protein LM5578_1904 [Listeria monocytogenes 08-5578]
 gi|284995291|ref|YP_003417059.1| hypothetical protein LM5923_1856 [Listeria monocytogenes 08-5923]
 gi|284057711|gb|ADB68652.1| hypothetical protein LM5578_1904 [Listeria monocytogenes 08-5578]
 gi|284060758|gb|ADB71697.1| hypothetical protein LM5923_1856 [Listeria monocytogenes 08-5923]
          Length = 462

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 143/388 (36%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++      +E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + I  +   D FP T H+E  +L+ R
Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVILMTR 456


>gi|291562412|emb|CBL41228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [butyrate-producing
           bacterium SS3/4]
          Length = 607

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 145/387 (37%), Gaps = 43/387 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-LY 59
            G   +D  YE+QL  K   + +++  F      I   +P HYR +    +  D    + 
Sbjct: 146 GGCQYLDMPYEKQLEHKKKEVSELLRPFCRVEEIIGMDDPFHYRNKVHAVMARDRKGHII 205

Query: 60  HIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQID 108
             ++ + T   + ++  +  +            L+ +  +++         LR  L +  
Sbjct: 206 SGVYKEGTHTVLPVETCLIENKKADEIIGTIRELLPSFKMKVFDEDTGYGFLRHVLVRTA 265

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161
           + T    + +V LI    +  +       LR         +Q +           K  + 
Sbjct: 266 HATG---EIMVVLITASPVFPSKNNFVKALRKIHPEITTVVQNVNGRDTSMVLGEKEHVL 322

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
               ++ + L        +R    SF Q N      +    + A      + +++ YCG 
Sbjct: 323 YGPGFIVDVLCGK----KFRISSKSFYQINPVQTEKLYNLAIEAAGLTGKETVVDAYCGI 378

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   +V A     V+ VE+ K +V  A  N  AN   N++     + +F   M       
Sbjct: 379 GTIGIVAASAAKEVIGVELNKDAVRDAVTNAKANGEKNIRFYNNDAGKFMVQMAS----- 433

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSIL-ST 337
                   +     +F+DPPRSG  +  +    +     ++Y+SCNP++L RDL+     
Sbjct: 434 -------QNAHADVVFMDPPRSGSTEEFMDAVAILNPDRVVYVSCNPETLARDLAYFKKK 486

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  E+    DQFP T H+E  VLL +
Sbjct: 487 GYRAEKAWAVDQFPATSHVETVVLLSK 513


>gi|325687169|gb|EGD29191.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK72]
          Length = 464

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 159/384 (41%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +     + ++++       +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 216 HYSGEIMLILVTTRPKIFRVEQLMERLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +R+        ++    +F Q N  +   + +  +  ++    D+ L+ Y G G  
Sbjct: 276 DYITDRMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N A N + N   V   ++E  Q   +E       
Sbjct: 332 GLSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYVCAPAEEAIQNWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   V   P  I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYRELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+EC  LLV+
Sbjct: 440 LKKVQPVDLFPQTHHVECVALLVK 463


>gi|217964147|ref|YP_002349825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           HCC23]
 gi|217333417|gb|ACK39211.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           HCC23]
 gi|307571286|emb|CAR84465.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
           monocytogenes L99]
          Length = 458

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++      +E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + I  +   D FP T H+E  VLL  K 
Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKN 458


>gi|94994593|ref|YP_602691.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|94548101|gb|ABF38147.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|332001949|gb|AED99120.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
          Length = 463

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 146/380 (38%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 99  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N A N + N   +  +++       ++            
Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFIADTAEHAMATWAKD------------ 382

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQ 442

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC  LL ++
Sbjct: 443 PVDLFPQTHHVECVSLLEKR 462


>gi|228476539|ref|ZP_04061226.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
 gi|228251845|gb|EEK10896.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
          Length = 451

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 146/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L+  +Y++QL  K D L Q +  F+  N +       I   +P HYR + +F     
Sbjct: 81  GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYDIRPTIGMEQPQHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYLT 111
           G  +   +F + +   + ID  +    L   I   +  ++   +       K+  I  + 
Sbjct: 141 GSSVKSGLFAEGSHRLINIDDCLVQDELTQVIMNKVTNLLDKYKFPIYNERKISGIRTVM 200

Query: 112 SQ----SDQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    S+Q  +  +  +      L     E    +        Y         +T+I  
Sbjct: 201 IRRALGSNQVQLIFVTSKSVSFTKLVKELTESFPEIVTIAVNYNYSKSSEIYGQETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221
            +D + E +      L       +F Q N      +    + A   G    L++ YCG G
Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPQQTEVLYGQAVEALDVGKAEHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A     +  ++I   ++E AR N  +  + N       +++      +E     
Sbjct: 317 TIGLAFANKVKSIRGMDIIPEAIEDARKNAKSLGLENAHYEVGKAEDIIPRWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  + AY    ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILAYTPEKMVYVSCNVSTLARDLVSLAKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|222823969|ref|YP_002575543.1| tRNA (uracil-5-)-methyltransferase [Campylobacter lari RM2100]
 gi|262827649|sp|B9KCK3|TRMA_CAMLR RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|222539191|gb|ACM64292.1| tRNA (uracil-5-)-methyltransferase [Campylobacter lari RM2100]
          Length = 346

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 127/353 (35%), Positives = 208/353 (58%), Gaps = 13/353 (3%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRI 73
            EK+   + +  +     +Q F+S    YR RAEF I+H +  ++ + M+  + K+++ I
Sbjct: 4   EEKIALNKALFSSLYDKEIQCFKSPLKAYRTRAEFCIYHHENGEISYAMY--ENKKKIPI 61

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
             F      I A M  ++    L   L+ KLF +++L ++ D +I TL+YH+ ++   ++
Sbjct: 62  KNFEIADEKIQAYMPILLD--NLNENLKHKLFGVEFLATKIDLSI-TLLYHKNIESITQD 118

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                     ++K  ++LI R+   K+  + + + + L +  + + Y    + F QPN  
Sbjct: 119 LQE------LSKKLNLKLIARSRGKKLVFNGENLKQILNIKNKEIFYEFNNDCFIQPNTT 172

Query: 194 INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN  M+EWV+    K  + DLLELYCG GNF++ LA++F+++LA EI+K ++E A  N  
Sbjct: 173 INEKMIEWVIDLLEKEERKDLLELYCGYGNFTIALAKYFNKILATEISKKNIEFALKNCD 232

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N + N+   R+SS+E +QA+++EREFNRLK ID+  +    + VDPPR+GLD + + ++
Sbjct: 233 LNSIKNISFTRLSSEELSQALKKEREFNRLKGIDLDGFNISHVLVDPPRAGLDVSVIELI 292

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + Y +I+YISCNP +L  +L ILS +H I  LA FDQF  T H+ECGV L  K
Sbjct: 293 KKYENIIYISCNPITLRENLEILSQSHEILNLAFFDQFANTSHLECGVHLRLK 345


>gi|313637500|gb|EFS02936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
           S4-171]
          Length = 459

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 143/392 (36%), Gaps = 42/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      + Q       I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSTQLELKRDIVIQSIEKHTKIDPQKLNIRATIGMEDPWRYRNKSQFQTRLV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGVNSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A K+ I  
Sbjct: 204 LVVRTGIKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQA-KSSIIF 259

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
             +       E +      L +     +F Q N      + + V  A      + L++ Y
Sbjct: 260 GEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAY 319

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A     V  ++    S+E A+ N   N + NV      +++      +E 
Sbjct: 320 CGVGTIGQAFASKVKEVRGIDTIPESIEDAKRNAEKNGLENVYYEVGKAEDVFPKWMKE- 378

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       ++   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L
Sbjct: 379 -----------GFKPDAVIVDPPRSGCDQGLIQSLLQAEAKQLVYVSCNPSTLARDLALL 427

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +  + +  +   D FP T H+E  VLL  K +
Sbjct: 428 AKKYRVRYMQPVDMFPQTAHVETVVLLELKNN 459


>gi|312863381|ref|ZP_07723619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           vestibularis F0396]
 gi|311100917|gb|EFQ59122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           vestibularis F0396]
          Length = 453

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 152/384 (39%), Gaps = 40/384 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61
              YE+QL  K  ++   +     + ++++        P  YR +A+  +      L   
Sbjct: 85  HMTYEEQLKFKRKQVVDNLYKTAGISDVEVAETLGMDTPYAYRNKAQVPVRRVKGQLETG 144

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110
            + + + + + I+ F+     I+ L++   +++    L+P        L+R  + +  + 
Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166
           + Q     VT    R       +    + +A  +    IQ I   N T     ++    Y
Sbjct: 205 SGQMMLVFVT---TRPKVFRIDQVIAMITEAFPSVVSIIQNINDKN-TNAIFGKEFRTLY 260

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225
             + +T +     Y     SF Q N  +   + +  +  +       +++ Y G G   L
Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A+    V  VE+ + +VE A+ N   N + N   V  S++            N +   
Sbjct: 321 SFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVADSAE------------NAMAKW 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342
                +   I VDPPR GL ++ +   V   P  I Y+SCNP ++ RD+       + ++
Sbjct: 369 SKDGIKPDIIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKSYQELGYELK 428

Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366
           ++   D FP T H+EC VLL R  
Sbjct: 429 KVQPVDLFPQTHHVECVVLLQRSK 452


>gi|261367933|ref|ZP_05980816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum
           variabile DSM 15176]
 gi|282570747|gb|EFB76282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum
           variabile DSM 15176]
          Length = 381

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/382 (21%), Positives = 143/382 (37%), Gaps = 34/382 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
              LL   Y +QLA+K  RL+ ++  F          +P HYR +A          L   
Sbjct: 14  GCPLLATPYPEQLAQKQTRLQTLLGKFAPVEPVQGMEKPWHYRNKAIASFAMRQGKLVCG 73

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMAT-------IRLEPLLRAKLFQIDYLTSQS 114
           ++ + T   +     +     +N  +  ++            E      L  +    ++ 
Sbjct: 74  LYAEGTHTVLPGSDCLLQQEALNRTLEAVLQAARSCRWTAYDEDRGTGSLRHVVLRGTRK 133

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDA-------LHARKYQIQLIGRANKTKICLDRDYV 167
            + +VTL+         R     LR         +H            N+ K+      V
Sbjct: 134 GEVLVTLVTPGPALPGSRNFCAALRKEAPWVAGIVHNINPTATSAVLGNREKVLYGPGQV 193

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226
            + L      L +     SF Q N      +    +  A    +  +++ YCG G   L 
Sbjct: 194 LDTLC----GLRFAISSRSFYQVNPLQTEVLYRTAMKLADLSGKETVVDAYCGIGTIGLC 249

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
            A    +VL +E    +V  A  N   N V N +     + E+ +   R           
Sbjct: 250 AASSSGQVLGIERNPAAVRDAIANARRNGVRNARFTCADATEWMEQAAR----------- 298

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIER 343
             +     +F+DPPR+G   A +G V   A   ++Y+SC+P++L RD+++ S   +  +R
Sbjct: 299 -QALHPDVVFLDPPRAGSTPACIGAVARMAPQRVVYVSCDPETLARDVALFSQKGYRAQR 357

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
               D FP+TRH+E  VLL R+
Sbjct: 358 FVPVDLFPHTRHVETIVLLQRE 379


>gi|313623417|gb|EFR93632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
           J1-023]
          Length = 459

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 143/391 (36%), Gaps = 40/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++       E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLQVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             + I  +   D FP T H+E  VLL  K +
Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKDN 459


>gi|322385303|ref|ZP_08058948.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
           ATCC 51100]
 gi|321270562|gb|EFX53477.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
           ATCC 51100]
          Length = 453

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 156/381 (40%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QLA K  +++  +     + ++++       +P+ YR +A+  +      L    F 
Sbjct: 88  YPAQLAFKGKQVQDCLYKIAGISDVEVLETLGMDQPLAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  + + +
Sbjct: 148 KNSHDLLPIEDFYIQDPIIDQVIVFVRDLLRRFALKPYDEKEGTGLIRNLVVRRGHNSGE 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   E    ++  +     Q        + +    +D++ +
Sbjct: 208 IMVILVTNRSKIFRVEQLIERLTEAFPAIKSIMQNINDQPGNAIFGREFRTLYGQDFITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +        ++    +F Q N  +   + +         + D +L+ Y G G   L LA
Sbjct: 268 SMLGKQ----FQIAAPAFYQVNTEMAEKLYQTAFDFADFKKEDIVLDAYSGIGTIGLSLA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               +V  VE+   +VE ++ N   N + +   V   +++  Q                 
Sbjct: 324 DRVQQVYGVEVIPEAVENSQRNAELNGITSASYVCAPAEKAIQTWLN------------Q 371

Query: 289 SYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   I VDPPR GL ++ +   V   P  I+YISCNP ++ RD+ +     + ++++ 
Sbjct: 372 GVKADVILVDPPRKGLTESFITSSVSMEPQRIVYISCNPATMARDIKLYQGQGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D FP T H+EC VLL RK 
Sbjct: 432 PVDLFPQTHHVECVVLLQRKK 452


>gi|254853619|ref|ZP_05242967.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
 gi|258606994|gb|EEW19602.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
          Length = 459

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 142/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMGLEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++       E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + I  +   D FP T H+E  VLL  K 
Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458


>gi|169830726|ref|YP_001716708.1| RNA methyltransferase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637570|gb|ACA59076.1| RNA methyltransferase, TrmA family [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 465

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/403 (22%), Positives = 142/403 (35%), Gaps = 60/403 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              LL   Y +QL  K  ++R  +              +  +EP HYR +A FH+  D  
Sbjct: 85  GCHLLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLGMNEPRHYRNKAHFHVSRDSG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPG-----SLLINA---------------LMIEMMATIRL 96
            L      + +    R+  F+        LL+                 L + +      
Sbjct: 145 RLALGFLARGSH---RVTCFVDADGGSGCLLVQRDLLRVAARAAALLESLRVPLYDWETQ 201

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-- 154
              LR  L +    T +    +VT    R      RE A RL          I+ +    
Sbjct: 202 RGYLRNLLLRRAAATGEIMLVLVT---GRQNWPGEREFAERLTAEEPGVVSVIRNVNALE 258

Query: 155 -----ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                  + ++      + E L      L +R    SF Q N        E +     G+
Sbjct: 259 TRELLGPENRVRAGEPAITEHLG----GLKFRIGPASFFQVNPEQAEKTYE-IARLFAGL 313

Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G   +++ Y G G  +L LA     V+  E    +V  A+ N   N + NV+  + + +
Sbjct: 314 TGKETVVDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQGAVE 373

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNP 325
           +             L +      R     +DPPR G   A +  +       ++Y+SC P
Sbjct: 374 DL------------LPEWAARGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAP 421

Query: 326 DSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +L RDL  L+     + ++   D FP T H+EC V L RK S
Sbjct: 422 ATLARDLGRLAELGFDVVKVQPVDMFPQTSHIECVVSLTRKHS 464


>gi|55822353|ref|YP_140794.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus
           CNRZ1066]
 gi|55738338|gb|AAV61979.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
           CNRZ1066]
          Length = 454

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 146/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L+  +Y++QL  K D L Q +  F+  N +       I   +P HYR + +F I   
Sbjct: 81  GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
           G  +   +F + +   + ID  +    L  A+M ++   +    L          +R  +
Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVM 200

Query: 105 FQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    ++Q     VT   +    L          +        Y         +T+I  
Sbjct: 201 IRRALGSNQVQLIFVTSNPVSLTKLVKELTLSYPEIVTVAVNYNYSKSSEIYGQETEIIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221
            +D + E +      L       +F Q N      +    + A        L++ YCG G
Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYGQAVEALEVDKSEHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A+    +  ++I   ++E AR N  +  ++N       +++      +E     
Sbjct: 317 TIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRADALIVDPPRTGLDSKLLKTILKYTPKKMVYVSCNVSTLARDLVSLAKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|313632900|gb|EFR99843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
           N1-067]
          Length = 459

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 144/392 (36%), Gaps = 42/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      + Q       I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPQKLNIRATIGMEDPWRYRNKSQFQTRLV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGVNSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A K+ I  
Sbjct: 204 LVVRTGIKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQA-KSSIIF 259

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
             +       E +      L +     +F Q N      + + V  A      + L++ Y
Sbjct: 260 GEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAY 319

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A     V  ++    S+E A+ N   N + NV      +++      +E 
Sbjct: 320 CGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENVYYEVGKAEDVFPKWMKE- 378

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       ++   + VDPPRSG D   +G +       ++Y+SCNP +L RDL++L
Sbjct: 379 -----------GFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLARDLALL 427

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +  + +  +   D FP T H+E  VLL  K +
Sbjct: 428 AKKYRVRYMQPVDMFPQTAHVETVVLLELKNN 459


>gi|153855592|ref|ZP_01996708.1| hypothetical protein DORLON_02726 [Dorea longicatena DSM 13814]
 gi|149752013|gb|EDM61944.1| hypothetical protein DORLON_02726 [Dorea longicatena DSM 13814]
          Length = 363

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 147/381 (38%), Gaps = 42/381 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-YHIMFDQQT 67
            Y++QL  K  +  Q++  F   +  I    P  YR +       D        ++ + T
Sbjct: 2   PYKEQLKRKQKQEEQLLGGFCKVSPIIGMEHPYFYRNKVHAVFDRDKKGNVISGIYAEGT 61

Query: 68  KERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
              + ++  +               L+ +  I+         LLR  L +  +   ++ +
Sbjct: 62  HRVIAVEECLIEDKKSQEIIRTIRELLPSFKIKTYNEDTGYGLLRHVLVRRGF---ETGE 118

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDE 169
            +V L+    +  +       LR         +  +           K K      ++ +
Sbjct: 119 IMVVLVLGSPILPSKNNFVKALRKVHPEITTVVLNVNNKQTSMVLGEKEKPIYGPGFIKD 178

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228
           +L        +R    SF Q N      +    +  A    +  +++ YCG G   L+ A
Sbjct: 179 KLC----GCTFRISPKSFYQVNPVQTEVLYNTAMDYAELTGKETVIDAYCGTGTIGLIAA 234

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           ++  +V+ VE+ K +V+ AR N   N + N +I    +  F   M  + +          
Sbjct: 235 KNAKKVIGVELNKDAVKDARINAKENGITNAEIYAGDAGRFMVDMASKNQ---------- 284

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   +F+DPPR+G D+  +  V       ++Y+SCNP++L RDL  L+   +   ++ 
Sbjct: 285 --KADVVFMDPPRAGSDEKFLSSVIKLGPKRVVYVSCNPETLARDLKYLTRHGYQAVKIQ 342

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D FP+  H+E  V LVRK 
Sbjct: 343 PVDNFPFCDHIETVVKLVRKK 363


>gi|25010521|ref|NP_734916.1| hypothetical protein gbs0448 [Streptococcus agalactiae NEM316]
 gi|50401579|sp|Q8E6W1|Y448_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0448
 gi|23094874|emb|CAD46092.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 451

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 154/388 (39%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  QY++QL  K D +RQ ++ F+    +       I  SEP HYR + +F +   
Sbjct: 81  GCQIMHLQYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111
           G ++   ++ Q T   + I   +    L   ++    E++   +L      K+  +  + 
Sbjct: 141 GGNVRAGLYAQGTHRLIDIKDCLVQDSLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200

Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160
            +    S +  +  I  + LD  + +  I L       K     I  +         T++
Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219
              ++ ++E +   G +L       +F Q N      +  E V A       DL++ YCG
Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A     V  ++I   +++ A+ N       N       +++       E   
Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDVIPRWYSE--- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
                     +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+ 
Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L RK
Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQRK 450


>gi|139473609|ref|YP_001128325.1| RNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|134271856|emb|CAM30091.1| putative RNA methyltransferase [Streptococcus pyogenes str.
           Manfredo]
          Length = 462

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 148/380 (38%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 99  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N A N + N   V  +++       ++            
Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 382

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQ 442

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC VLL+++
Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462


>gi|324993953|gb|EGC25872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK405]
 gi|327463215|gb|EGF09536.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1]
 gi|327489947|gb|EGF21736.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1058]
          Length = 465

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 162/385 (42%), Gaps = 40/385 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +     + ++++       +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 216 HYSGEIMVILVTTRPKIFRVEQLMECLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           +Y+ +++        ++    +F Q N  +   + +  +  ++    D+ L+ Y G G  
Sbjct: 276 NYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +V  VE+   +VE +R N A N + N   V  S++E  Q   +E       
Sbjct: 332 GLSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCASAEEAIQNWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   V   P  I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++++   D FP T H+EC  LLV++
Sbjct: 440 LKKVQPVDLFPQTHHVECVSLLVKR 464


>gi|19746322|ref|NP_607458.1| RNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|50401606|sp|Q8P0H4|Y1360_STRP8 RecName: Full=Uncharacterized RNA methyltransferase spyM18_1360
 gi|19748514|gb|AAL97957.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS8232]
          Length = 462

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 148/380 (38%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 99  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + +V L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 218 --EMMVVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDEN-TNAIFGKDFKTLYGKD 274

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N A N + N   V  +++       ++            
Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 382

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC VLL+++
Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462


>gi|77407679|ref|ZP_00784434.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
 gi|77173678|gb|EAO76792.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
          Length = 451

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 154/388 (39%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  QY++QL  K D +RQ ++ F+    +       I  SEP HYR + +F +   
Sbjct: 81  GCQIMHLQYDKQLEFKTDIIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111
           G ++   ++ Q T   + I   +    L   ++    E++   +L      K+  +  + 
Sbjct: 141 GGNVKAGLYAQGTHRLIDIKDCLVQDRLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200

Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160
            +    S +  +  I  + LD  + +  I L       K     I  +         T++
Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219
              ++ ++E +   G +L       +F Q N      +  E V A       DL++ YCG
Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A     V  ++I   +++ A+ N       N       +++       E   
Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDIIPRWYSE--- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
                     +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+ 
Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L RK
Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQRK 450


>gi|116627288|ref|YP_819907.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
           LMD-9]
 gi|116100565|gb|ABJ65711.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           thermophilus LMD-9]
          Length = 439

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 146/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L+  +Y++QL  K D L Q +  F+  N +       I   +P HYR + +F I   
Sbjct: 66  GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSF 125

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
           G  +   +F + +   + ID  +    L  A+M ++   +    L          +R  +
Sbjct: 126 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVM 185

Query: 105 FQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    ++Q     VT   +    L          +        Y         +T+I  
Sbjct: 186 IRRALGSNQVQLIFVTSNPVSLTKLVKELTLSYPEIVTVAVNYNYSKSSEIYGQETEIIW 245

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221
            +D + E +      L       +F Q N      +    + A        L++ YCG G
Sbjct: 246 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYGQAVEALEVDKSEHLIDAYCGVG 301

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A+    +  ++I   ++E AR N  +  ++N       +++      +E     
Sbjct: 302 TIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE----- 356

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  L+  +
Sbjct: 357 -------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAKVY 409

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 410 DVNYIQSVDMFPHTARTEAVVKLTKK 435


>gi|289435036|ref|YP_003464908.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171280|emb|CBH27822.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 459

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 144/392 (36%), Gaps = 42/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      + Q       I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPQKLNIRATIGMEDPWRYRNKSQFQTRLV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGVNSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A K+ I  
Sbjct: 204 LVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQA-KSSIIF 259

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
             +       E +      L +     +F Q N      + + V  A      + L++ Y
Sbjct: 260 GEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAY 319

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A     V  ++    S+E A+ N   N + NV      ++E      +E 
Sbjct: 320 CGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENVYYEVGKAEEVFPKWMKE- 378

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       ++   + VDPPRSG D   +G +       ++Y+SCNP +L RDL++L
Sbjct: 379 -----------GFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLARDLALL 427

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +  + +  +   D FP T H+E  VLL  K +
Sbjct: 428 AKKYRVRYMQPVDMFPQTAHVETVVLLELKNN 459


>gi|220931148|ref|YP_002508056.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168]
 gi|219992458|gb|ACL69061.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168]
          Length = 453

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 146/386 (37%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
              L    Y  QL  K   ++  +           N  I    P  YR +A+F +  D  
Sbjct: 80  GCHLQQMDYSLQLLHKQKIVKDTLERIGGFEEVRVNEVIGADHPWIYRNKAQFPLGSDNE 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE-----------MMATIRLEPLLRAKL 104
             +    + + T + +     +    LIN +  +           +        LLR  +
Sbjct: 140 GRVITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISILNNYDLTVYDEKTHTGLLRHLV 199

Query: 105 FQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIR---LRDALHARKYQIQLIGRANKTKI 160
            ++   T+Q+    VT     + L +  R+       L+  L     +   +   +KT +
Sbjct: 200 VRVGICTNQALLIFVTRDKKFKELQEIARKLMTEIPELKGVLQNINPRRTNVIMGDKTLL 259

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
               DY  + +     ++ Y    +SF Q N      +   V   A    Q  +++ YCG
Sbjct: 260 IKGNDYYIDYIG----SIRYAISPHSFFQVNTLQTERLYNTVRKYAGLSGQETVVDAYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G+  + LA     V  +E+   ++E A  N A N +NN   ++   ++    +      
Sbjct: 316 AGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVEDKLPEL------ 369

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                +D    +   I  DPPR GLD  T+  V     P I+Y+SCNP +L RDL  +  
Sbjct: 370 -----VDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARDLKEIKA 424

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            + I  +   D FP T H+EC V L 
Sbjct: 425 CYDINEVQPVDLFPQTYHVECVVKLE 450


>gi|313608342|gb|EFR84315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           FSL F2-208]
          Length = 459

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREILAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++      +E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLEVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + I  +   D FP T H+E  VLL  K 
Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458


>gi|56807774|ref|ZP_00365630.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus pyogenes
           M49 591]
 gi|209559589|ref|YP_002286061.1| Putative RNA methyltransferase [Streptococcus pyogenes NZ131]
 gi|209540790|gb|ACI61366.1| Putative RNA methyltransferase [Streptococcus pyogenes NZ131]
          Length = 452

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 146/380 (38%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 88  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 148 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 207 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 264 TITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N A N + N   +  +++       ++            
Sbjct: 324 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFIADTAEHAMATWAKD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 372 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC  LL ++
Sbjct: 432 PVDLFPQTHHVECVSLLEKR 451


>gi|229543018|ref|ZP_04432078.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
 gi|229327438|gb|EEN93113.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
          Length = 459

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 147/388 (37%), Gaps = 41/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y+QQL EK D + Q +                I    P  YR +++F +  D
Sbjct: 85  GCQLQHLVYKQQLIEKRDIVIQALERHTKLKVDELDIRPTIGMDNPWLYRNKSQFQLGED 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAK 103
              +   ++   +   + +   +             + ++N   + +      + ++R  
Sbjct: 145 HGKIISGLYSLDSHRLINVPECIVQHPLTNKVTQVVTQILNDFHVPVYNEKTGKGIVRTI 204

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ QA V LI  +            ++  L       Q +  A KT +   
Sbjct: 205 VTRVGI---QTGQAQVVLITTKRELPRKDVILSEIKKRLPEVVSVAQNVN-AKKTSVIFG 260

Query: 164 RDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYC 218
            + +     E +        Y     +F Q N    V +   V  AA    +  + + YC
Sbjct: 261 DETIHLSGKEIIEERLEEFTYELSARAFFQLNPIQTVKLYNEVKKAAALTGKEKIADTYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     +  +++   ++E A+ N AA+++ N       ++        E  
Sbjct: 321 GVGTIGLWLADGASEIRGMDVIPEAIEDAKKNAAAHNIPNAHYFAGKAEVLLPKWLNE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D+A +  +        +Y+SCNP +L +DL ILS
Sbjct: 379 ----------GWRPDVVIVDPPRSGCDEALLRTILKVKPKKFVYVSCNPSTLAKDLHILS 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + I  +   D FP T H+EC VL+ R
Sbjct: 429 KAYNIAYMQPVDMFPQTVHVECVVLMSR 456


>gi|319654160|ref|ZP_08008249.1| hypothetical protein HMPREF1013_04869 [Bacillus sp. 2_A_57_CT2]
 gi|317394094|gb|EFV74843.1| hypothetical protein HMPREF1013_04869 [Bacillus sp. 2_A_57_CT2]
          Length = 460

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 153/391 (39%), Gaps = 49/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L   +Y+QQL EK D + Q +      N +       I   +P  YR +++F +   
Sbjct: 87  GCQLQHLRYDQQLKEKRDIIIQALERHTKLNPEKLDIKETIGMEDPWSYRNKSQFQVGQK 146

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   +   + I++                 ++  L I +      + ++R  
Sbjct: 147 DGKVLAGLYGMNSHRLINIEHCAVQHPQTTKVTEAVKRILQDLRIPIYNERSRKGIVRTI 206

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  + LI  +           +++  L   K  IQ +    KT +   
Sbjct: 207 VARVGI---QTGELQIVLITTQKELPKKEIIIEKIKSELPEVKSIIQNVN-GEKTSLIFG 262

Query: 164 R--------DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLL 214
           +        D++ E L      L +     +F Q N    V +   V  AA    +  + 
Sbjct: 263 QETMNLDGSDFIQETLG----DLQFELSARTFFQLNPEQTVKLYNEVKRAAALTGKEKVA 318

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G   L +A     +  ++I + S+E A+ N   + + + + V   ++E      
Sbjct: 319 DAYCGVGTIGLWVADQAAEIRGMDIIRESIEDAKKNADRHGIKHAQYVVGKAEE------ 372

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
                  L       +R   I VDPPR+GLD   +  +       ++Y+SCNP +L +D+
Sbjct: 373 ------WLPKWTKDGWRPDVIIVDPPRTGLDHQLLKTILKVQPKKVVYVSCNPSTLAKDI 426

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           S+LS  + +  +   D FP T H+E    LV
Sbjct: 427 SVLSPKYKVIGIQPVDMFPQTAHVESVTQLV 457


>gi|324994724|gb|EGC26637.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK678]
          Length = 464

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 161/384 (41%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +     + ++++       +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 216 HYSGEIMVILVTTRPKIFRVEQLMECLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           +Y+ +++        ++    +F Q N  +   + +  +  ++    D+ L+ Y G G  
Sbjct: 276 NYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +V  VE+   +VE +R N A N + N   V  S++E  Q   +E       
Sbjct: 332 GLSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYVCASAEEAIQNWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   V   P  I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+EC  LLV+
Sbjct: 440 LKKVQPVDLFPQTHHVECVALLVK 463


>gi|300764680|ref|ZP_07074671.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
 gi|300514566|gb|EFK41622.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
          Length = 459

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 142/388 (36%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMGLEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++       E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + I  +   D FP T H+EC  LL R
Sbjct: 429 KKYRIRYMQPVDMFPQTAHIECVGLLTR 456


>gi|57867361|ref|YP_189004.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
 gi|81674004|sp|Q5HN37|Y1435_STAEQ RecName: Full=Uncharacterized RNA methyltransferase SERP1435
 gi|57638019|gb|AAW54807.1| RNA methyltransferase, TrmA family [Staphylococcus epidermidis
           RP62A]
          Length = 456

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 138/389 (35%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K +++  +               I    P  YR +++  +     
Sbjct: 82  GCQLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNKSQIPVGQSNS 141

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
           +      + Q++ + + +D  +                +N L I +        L+R  +
Sbjct: 142 NQVIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLV 201

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  Y T +     VT         LL +  ++    +             +    ++  
Sbjct: 202 VRTGYHTDEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMT 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++++L+     + Y   + SF Q N+     + +  L   +    + +L+ YCG
Sbjct: 262 LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   +++ A  N   N + N       +++     +     
Sbjct: 318 IGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS---- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +   + VDPPR G D+  +  +       I+YISCNP +  RD  IL+ 
Sbjct: 374 --------QGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAE 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + +  +   D FP T H+E   L VRK 
Sbjct: 426 QYELVEITPVDMFPQTTHIETVALFVRKD 454


>gi|46907934|ref|YP_014323.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094248|ref|ZP_00231958.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
           H7858]
 gi|226224306|ref|YP_002758413.1| similar to RNA methyltransferase [Listeria monocytogenes Clip81459]
 gi|254932851|ref|ZP_05266210.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|255520198|ref|ZP_05387435.1| hypothetical protein LmonocFSL_03022 [Listeria monocytogenes FSL
           J1-175]
 gi|51316674|sp|Q71YW4|Y1727_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1727
 gi|46881203|gb|AAT04500.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47017376|gb|EAL08199.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
           H7858]
 gi|225876768|emb|CAS05477.1| Putative similar to RNA methyltransferase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293584405|gb|EFF96437.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
 gi|328466462|gb|EGF37605.1| RNA methyltransferase [Listeria monocytogenes 1816]
 gi|332312145|gb|EGJ25240.1| hypothetical protein LMOSA_26260 [Listeria monocytogenes str. Scott
           A]
          Length = 459

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 142/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++       E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + I  +   D FP T H+E  VLL  K 
Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458


>gi|262113703|emb|CAR95370.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus phage
           phi-m46.1]
          Length = 462

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 146/379 (38%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 99  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTIMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N A N + N   +  +++       ++            
Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFIADTAEHAMATWAKD------------ 382

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLTKVQ 442

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 443 PVDLFPQTHHVECVALLVK 461


>gi|21910560|ref|NP_664828.1| TrmA family RNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|21904760|gb|AAM79631.1| putative RNA methyltransferase, TrmA family [Streptococcus pyogenes
           MGAS315]
          Length = 409

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 149/380 (39%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 46  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 105

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 106 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 164

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 165 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 221

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 222 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 281

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A++N A N + N   V  +++       ++            
Sbjct: 282 KTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKD------------ 329

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 330 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 389

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC VLL+++
Sbjct: 390 PVDLFPQTHHVECVVLLIKE 409


>gi|297617338|ref|YP_003702497.1| RNA methyltransferase, TrmA family [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145175|gb|ADI01932.1| RNA methyltransferase, TrmA family [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 458

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 146/390 (37%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L    Y +QL  K + + Q +        ++        P HYR + +FH   +   
Sbjct: 86  GCQLQHIDYSRQLELKREVVVQALKRIGHLECEVLPVRGMDNPWHYRNKGQFHAGKNDGR 145

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQ 106
           ++   F   + + +     +  S  +N L            +E+      +  LR  + +
Sbjct: 146 VFFGFFKPGSYQAVPARDCLLFSPAVNNLLGYLEQSLTESGVEVYHPQTGDGRLRNLVIR 205

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163
               T +     VT     L     +   E   +L             +    K ++   
Sbjct: 206 ESSATGEMMAVFVTTHEKSLNSHFLQGLGEAFPQLTSVYQNINPGRSPLALGPKFRLLSG 265

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNG 221
           +      +T     L +     SF Q N  +   +L  +++    + G   +L+ Y G G
Sbjct: 266 KP----EITDKIEHLSFEISPGSFFQVNR-VQTELLYRIVSEFAELNGTETVLDAYSGVG 320

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L LA    +V+AVE  + +V  A+ N   N + NV+ +    +++            
Sbjct: 321 TIALFLAERAKKVIAVEENEKAVADAQKNARGNGIKNVRFIAQRVEDWV----------- 369

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TT 338
             +  +   R     VDPPR GL+   +  +   +   ++Y+SCNP +L RDL  L+   
Sbjct: 370 -TNAALDHERPDVAVVDPPRQGLNRGFLQALVTMSPARLVYVSCNPATLARDLGHLANQG 428

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           +TI  +   D FP T H+E  VLL +   G
Sbjct: 429 YTINAVQPVDMFPQTGHVETVVLLKKNNRG 458


>gi|312277778|gb|ADQ62435.1| TRNA methyltransferase, TrmA family [Streptococcus thermophilus
           ND03]
          Length = 454

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 146/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L+  +Y++QL  K D L Q +  F+  N +       I   +P HYR + +F I   
Sbjct: 81  GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
           G  +   +F + +   + ID  +    L  A+M ++   +    L          +R  +
Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRTVM 200

Query: 105 FQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    ++Q     VT   +    L          +        Y         +T+I  
Sbjct: 201 IRRALGSNQVQLIFVTSNPVSLTKLVKELTLSYPEIVTVAVNYNYSKSSEIYGQETEIIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221
            +D + E +      L       +F Q N      +    + A        L++ YCG G
Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYGQAVEALEVDKSEHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A+    +  ++I   ++E AR N  +  ++N       +++      +E     
Sbjct: 317 TIGLAFAKKVSTIRGMDIIPEAIEDARKNAESLGLDNAHYEVGKAEDIIPRWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRADALIVDPPRTGLDSKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|222151872|ref|YP_002561032.1| RNA methyltransferase, TrmA family protein homolog [Macrococcus
           caseolyticus JCSC5402]
 gi|222121001|dbj|BAH18336.1| RNA methyltransferase, TrmA family protein homolog [Macrococcus
           caseolyticus JCSC5402]
          Length = 454

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 151/385 (39%), Gaps = 40/385 (10%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMML---AFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDL 58
           TL    Y+ QL  K   +    +    F+   +   +    P  YR +A+  +     ++
Sbjct: 86  TLQHMSYDAQLKFKQHLVESAFIRLGKFKKVKVWETVGMDYPYEYRNKAQIPVRSVNGNV 145

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQI 107
               F + + + + ++ F     +I+  ++++   +R               +R  + + 
Sbjct: 146 ETGFFRKNSHQLVPVENFYIQHKVIDEAIVKVRDILRKYDIVPYNERNHNGEIRHIVVKR 205

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-- 165
            + T Q    +VT        ++     +   D + +            +  + L R+  
Sbjct: 206 GHYTGQLMIILVTNKKRLANIESITHDIVNTIDNVESVVLNFNNQ----EGNVILGRNNT 261

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
             +     T     L +R   NSF Q N      + +  L A      + +L+ YCG G 
Sbjct: 262 VLHGTPYYTDKILGLEFRVSPNSFFQVNTPQAETLYKLALEAANLKGHETVLDAYCGIGT 321

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+H ++V A+EI   S++ A+ N   N ++NV     S+ E             L
Sbjct: 322 ISLALAQHAEQVYAMEIVHESIKMAKQNAKMNGIDNVHFETGSADEI------------L 369

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339
                    F    VDPPR GLDD  +  +  Q+   I+Y+SCNP +  RD    +   +
Sbjct: 370 PKWSEQGVNFDVAVVDPPRKGLDDDFIQTLINQSPKTIVYVSCNPGTCARDCRKFADAGY 429

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +E +   D FP T H+EC V L +
Sbjct: 430 KLEYVKPVDLFPQTPHVECVVKLTK 454


>gi|191638003|ref|YP_001987169.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23]
 gi|190712305|emb|CAQ66311.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23]
 gi|327382080|gb|AEA53556.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei
           LC2W]
          Length = 457

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 161/380 (42%), Gaps = 38/380 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L I  Y  QL  K  +++++     +       I  + P+ YR +A+  +     +L   
Sbjct: 90  LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 149

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + + + I+ F+     I+  ++ +   +R            + ++R  + +  + 
Sbjct: 150 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 209

Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166
           T Q    +V+  +    L D   E  + L +          +   +    K++     DY
Sbjct: 210 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 269

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225
           + ++L  +     ++    SF Q N      + +  + AA    + ++++ Y G G  SL
Sbjct: 270 LLDKLLGSE----FQISPVSFYQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISL 325

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH   V  VE+ +P+V  AR N   NH++NV      ++E  Q  +     N L   
Sbjct: 326 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 379

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                    + VDPPR GLD + +  V     P I+Y+SCNP +L RDL +L+   +T +
Sbjct: 380 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQLLAAFGYTAK 433

Query: 343 RLALFDQFPYTRHMECGVLL 362
                D FP T+H+E    L
Sbjct: 434 ETQPVDMFPQTQHIESITAL 453


>gi|301066110|ref|YP_003788133.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus
           casei str. Zhang]
 gi|300438517|gb|ADK18283.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           casei str. Zhang]
          Length = 454

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 161/380 (42%), Gaps = 38/380 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L I  Y  QL  K  +++++     +       I  + P+ YR +A+  +     +L   
Sbjct: 87  LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 146

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + + + I+ F+     I+  ++ +   +R            + ++R  + +  + 
Sbjct: 147 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 206

Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166
           T Q    +V+  +    L D   E  + L +          +   +    K++     DY
Sbjct: 207 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 266

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225
           + ++L  +     ++    SF Q N      + +  + AA    + ++++ Y G G  SL
Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPVQTEVLYKKAIEAAGLTGKKNVIDAYSGIGTISL 322

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH   V  VE+ +P+V  AR N   NH++NV      ++E  Q  +     N L   
Sbjct: 323 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 376

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                    + VDPPR GLD + +  V     P I+Y+SCNP +L RDL +L+   +T +
Sbjct: 377 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQLLAAFGYTAK 430

Query: 343 RLALFDQFPYTRHMECGVLL 362
                D FP T+H+E    L
Sbjct: 431 ETQPVDMFPQTQHIESITAL 450


>gi|170754817|ref|YP_001783005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B1 str. Okra]
 gi|169120029|gb|ACA43865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B1 str. Okra]
          Length = 461

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 153/388 (39%), Gaps = 39/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              +    Y+ QL  K  R+   +      ++        I    P  YR + +  +  +
Sbjct: 85  GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107
             ++    +  +T E   +               +I   M++   +   E   +  +  I
Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204

Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRECAIR--LRDALHARKYQIQLIGRANKTKICLDR 164
               + ++ + ++ ++ ++  +  ++E  I   +++ L+  K  IQ I    KT + L  
Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFLN-IKSIIQNINT-KKTNVILGE 262

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
                +  + +T       +     SF Q N      + +  L        + + + YCG
Sbjct: 263 KCITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCG 322

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E           
Sbjct: 323 TGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV---------- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
             + D+     +   + VDPPR G +   +  + A     I+Y+SC+P +L RDL IL+ 
Sbjct: 373 --IPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDLGILNG 430

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364
             +  + +   D FP T H+E  VL+ R
Sbjct: 431 LGYETKEVQTVDMFPQTSHVETIVLIQR 458


>gi|323694104|ref|ZP_08108283.1| hypothetical protein HMPREF9475_03146 [Clostridium symbiosum
           WAL-14673]
 gi|323501821|gb|EGB17704.1| hypothetical protein HMPREF9475_03146 [Clostridium symbiosum
           WAL-14673]
          Length = 488

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/425 (21%), Positives = 158/425 (37%), Gaps = 77/425 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29
              L +  YE+QL  K  ++   +                                    
Sbjct: 81  GCQLQMMSYEEQLKFKQRKVYNNLKRIGGLDNLYLPGEGPGAGENVGDGEGDRAGDREGG 140

Query: 30  -------VPNLQIFRSEPIHYRMRAEFHIWHDGDD-LYHIMFDQQTKERMRIDYFMPG-- 79
                  +    I   +P  YR +A+F    + ++ +    +  +T   +  D  + G  
Sbjct: 141 ESGRKPVIMEPIIGMEDPWRYRNKAQFPFGMNKENEVIAGFYAGRTHCIIENDDCLLGIQ 200

Query: 80  -SLLINALMIEMMATIRLEP--------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
            +  I A + ++M    ++P        L+R  L +  + T +     V         + 
Sbjct: 201 ENREILAAVKQIMTQYGIKPYQEESHTGLIRHVLIRKGFRTGELMVCFVVNGRKLPYSEG 260

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENS 186
           + E  + +   + +  Y + +     KT + L R+    Y    +T     + YR    S
Sbjct: 261 FVERLLEIPG-MTSISYNVNM----EKTNVILGREVVNLYGPGYITDYIGNVKYRISPLS 315

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           F Q N      +    L    G+ G+  + +LYCG G  SL L++   +V  VEI   ++
Sbjct: 316 FYQVNPVQTERLYGTALE-YAGLTGEETVWDLYCGIGTISLFLSQKAKKVYGVEIVPQAI 374

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E AR N   N + NV+     ++E       E +                I VDPPR G 
Sbjct: 375 EDARENARLNGIENVEFFVGKAEEVLPKQYEEDK-----------VYADVIVVDPPRKGC 423

Query: 305 DDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
           D   +  +       ++Y+SC+  +L RD+  L    + +ER++  D FP + H+E   L
Sbjct: 424 DPVCLDTIVMMGPKKVVYVSCDSATLARDVKYLEERGYWVERVSCVDMFPMSGHVETATL 483

Query: 362 LVRKP 366
           LVRKP
Sbjct: 484 LVRKP 488


>gi|315303539|ref|ZP_07874104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
           F6-596]
 gi|313628091|gb|EFR96659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
           F6-596]
          Length = 459

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      + Q       I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPQKLNIRATIGMEDPWRYRNKSQFQTRLV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGVNSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A K+ I  
Sbjct: 204 LVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQA-KSSIIF 259

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
             +       E +      L +     +F Q N      + + V  A      + L++ Y
Sbjct: 260 GEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAY 319

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A     V  ++    S+E A+ N   N + NV      ++E      +E 
Sbjct: 320 CGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENVYYEVGKAEEVFPKWMKE- 378

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       ++   + VDPPRSG D   +G +       ++Y+SCNP +L RDL++L
Sbjct: 379 -----------GFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLARDLALL 427

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  + +  +   D FP T H+E  VLL  K
Sbjct: 428 AKKYRVRYMQPVDMFPQTAHVETVVLLELK 457


>gi|73662203|ref|YP_300984.1| RNA methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494718|dbj|BAE18039.1| putative RNA methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 453

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNL--QIFRSEPIHYRMRAEFHIWHDG- 55
              L    Y+ QL  K +++  +      F+   +   I    P +YR +++  +  +  
Sbjct: 82  GCQLQHMTYQAQLNMKKEQVVNLFQRKAGFKDTIIHDTIGMENPWYYRNKSQIPVGKNNE 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
           + +    + Q++ + + +D  +    L            N L I +    + + ++R  +
Sbjct: 142 NKVITGFYRQRSHDIINMDECLIQDQLHQEVINKLKAWFNELNISVYNERKKQGMMRHVV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  +    S + +V  + +            RL+    A     Q +     + + + +
Sbjct: 202 IRTGH---HSRELMVIFVTNGKKFKQGDILTERLKQHFPAIVSIKQNVND-THSNVIMGQ 257

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
           +    Y  + +      + ++  + SF Q N+     + +  +  A    +  +L+ YCG
Sbjct: 258 NSYTLYGKDEIVDMLSDVTFKINDQSFYQINSIQTEKLYQRAIDYAELQGEETVLDTYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A     V  VE+   ++  A+ N   N   N   V   ++E     + E   
Sbjct: 318 IGTIGLYMAPKAKHVYGVEVVPEAITDAQQNATINQFENTTFVCGKAEEVILKWKSE--- 374

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                      R   + VDPPR G D+  +  +       I+YISCNP +  RD  +L+ 
Sbjct: 375 ---------GIRPDVVMVDPPRKGCDETFLKTLLELNPQKIVYISCNPSTQQRDAQLLAN 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + + ++   D FP+T H+E      R
Sbjct: 426 QYKLTQITPVDMFPHTTHVETVAQFER 452


>gi|226950817|ref|YP_002805908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A2 str. Kyoto]
 gi|226841903|gb|ACO84569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A2 str. Kyoto]
          Length = 461

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 144/387 (37%), Gaps = 37/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              +    Y+ QL  K  R+   +      ++        I    P  YR + +  +  +
Sbjct: 85  GCQVQHYSYKAQLEFKKQRVIDSLERIGKLDIDKIKIEDTIGMENPYRYRNKIQMPVRFE 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-------LINALMIEMMATIRLEPLLRAKLFQI 107
             ++    +  +T E   +               +I   M++   +   E   +  +  I
Sbjct: 145 KGEIKIGFYKSRTHEVADVKECFIQDEQADKIIQIIRNWMVKHNISAYNEETGKGFIRHI 204

Query: 108 DYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
               +  ++ ++ +I     ++     E    +       K  IQ I    KT + L   
Sbjct: 205 MVRKAFKNKELMLVIVTNKEEEIPYKEELINEVIKEFSNIKSIIQNINT-KKTNVILGEK 263

Query: 166 YVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
            +     + +T       +     SF Q N      + +  L        + + + YCG 
Sbjct: 264 CITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEFANLKGEEIVFDAYCGT 323

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL L++   +V  VEI K +++ A+ N   N ++N +     S+E            
Sbjct: 324 GTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFFVGKSEEV----------- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST- 337
            + D+     + + + VDPPR G +   +  + A     I+Y+SC+  +L RDL IL+  
Sbjct: 373 -IPDLIDKGIKAEVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDSGTLARDLGILNGL 431

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  + +   D FP T H+E  VL+ R
Sbjct: 432 GYETKEVQPVDMFPQTSHVETIVLIQR 458


>gi|327385224|gb|AEA56698.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus casei
           BD-II]
          Length = 454

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 161/380 (42%), Gaps = 38/380 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L I  Y  QL  K  +++++     +       I  + P+ YR +A+  +     +L   
Sbjct: 87  LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 146

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + + + I+ F+     I+  ++ +   +R            + ++R  + +  + 
Sbjct: 147 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 206

Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166
           T Q    +V+  +    L D   E  + L +          +   +    K++     DY
Sbjct: 207 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 266

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225
           + ++L  +     ++    SF Q N      + +  + AA    + ++++ Y G G  SL
Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPVQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISL 322

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH   V  VE+ +P+V  AR N   NH++NV      ++E  Q  +     N L   
Sbjct: 323 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 376

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                    + VDPPR GLD + +  V     P I+Y+SCNP +L RDL +L+   +T +
Sbjct: 377 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQLLAAFGYTAK 430

Query: 343 RLALFDQFPYTRHMECGVLL 362
                D FP T+H+E    L
Sbjct: 431 ETQPVDMFPQTQHIESITAL 450


>gi|213028321|ref|ZP_03342768.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 205

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 145/202 (71%), Positives = 172/202 (85%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           LD+DY+DERL VAG+ +IYRQ+ENSFTQPNA +N+ MLEW L  TK  +GDLLELYCGNG
Sbjct: 2   LDQDYIDERLPVAGKEIIYRQVENSFTQPNAAMNIQMLEWALEVTKDSKGDLLELYCGNG 61

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           NFSL LAR+F+RVLA EIAKPSV AA+YNIAANH++NV+I+RM+++EFTQAM   REFNR
Sbjct: 62  NFSLALARNFNRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 121

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341
           L+ ID+  Y+ +TIFVDPPRSGLD  T  MVQAYP ILYISCNP++LC++L  LS THT+
Sbjct: 122 LQGIDLKRYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHTV 181

Query: 342 ERLALFDQFPYTRHMECGVLLV 363
            RLALFDQFPYT HMECGVLL 
Sbjct: 182 SRLALFDQFPYTHHMECGVLLT 203


>gi|15675282|ref|NP_269456.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|94990664|ref|YP_598764.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|50401663|sp|Q99Z86|Y1346_STRP1 RecName: Full=Uncharacterized RNA methyltransferase
           SPy_1346/M5005_Spy1098
 gi|13622457|gb|AAK34177.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|94544172|gb|ABF34220.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 462

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 148/380 (38%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 99  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N A N + N   V  +++       ++            
Sbjct: 335 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 382

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC VLL+++
Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462


>gi|28895748|ref|NP_802098.1| RNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|50914416|ref|YP_060388.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|50401597|sp|Q8K722|Y1024_STRP3 RecName: Full=Uncharacterized RNA methyltransferase
           SpyM3_1024/SPs0836
 gi|73920489|sp|Q5XBK8|Y1070_STRP6 RecName: Full=Uncharacterized RNA methyltransferase M6_Spy1070
 gi|28810997|dbj|BAC63931.1| putative RNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|50903490|gb|AAT87205.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 462

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 149/380 (39%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 99  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A++N A N + N   V  +++       ++            
Sbjct: 335 KTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKD------------ 382

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC VLL+++
Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462


>gi|71910911|ref|YP_282461.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|71853693|gb|AAZ51716.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|290770987|emb|CBK33775.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
          Length = 451

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 148/380 (38%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 88  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 148 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 207 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 264 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N A N + N   V  +++       ++            
Sbjct: 324 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 372 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC VLL+++
Sbjct: 432 PVDLFPQTHHVECVVLLIKE 451


>gi|81429157|ref|YP_396158.1| putative RNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610800|emb|CAI55851.1| Putative RNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
          Length = 454

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 151/378 (39%), Gaps = 38/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y  QL  K +++  +             +  ++P  YR +A+  +      L    + + 
Sbjct: 93  YPAQLTFKRNQILNVFQKAHLDIPVQPTLGMTDPTGYRNKAQVPVRFIDGALMTGFYRKH 152

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ-SDQAI 118
           + + M ++ F      I+  +  +   +         E   +  L  I       S + +
Sbjct: 153 SHQVMPMEDFYIQDPKIDEAIKVVRDILRRFYIDPYNEDTHKGVLRTIMVRRGYYSHEMM 212

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDYVDERL 171
           +  I       A RE AI ++ AL      +Q +          ++TK+   RD++ + L
Sbjct: 213 IVFITRSKKLPAAREIAIEIKKALPEVVSIMQNVNAAQTNVIFGDQTKLIAGRDFIRDEL 272

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230
                 L +     SF Q N      + +  + A +    + +++ Y G G  SL +A+H
Sbjct: 273 M----GLKFEISAQSFYQVNPVQTEVLYQKAIEAAELTGNETVIDAYSGIGTISLAVAKH 328

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V  VE+ + +V  AR+N   N ++NV+     +++     +                
Sbjct: 329 AKQVYGVEVVESAVMDARHNAKINAIDNVEFTLGKAEDVMAQWQ------------TDGL 376

Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
           +   + VDPPR GL+ + +  V       ++Y+SCNP +L RDL +L +  +  E     
Sbjct: 377 QVDALIVDPPRKGLEPSFIEAVGQLKPAKMVYVSCNPATLARDLDLLAAQGYQAEGTQPV 436

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP T H+E    LV K
Sbjct: 437 DMFPQTLHVESVTKLVLK 454


>gi|332523646|ref|ZP_08399898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314910|gb|EGJ27895.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 453

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 147/384 (38%), Gaps = 46/384 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YEQQL  K  +++  +              I   +P  YR +A+  +      L    F 
Sbjct: 88  YEQQLLFKAKQVKDNLYKTAAIKEVELLPTIGMDQPYAYRNKAQIPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  F      I+ L            +          L++  + +  + +  
Sbjct: 148 KNSHDLLPISDFYIQDKEIDKLILFVRDLLRRFQVSPYNEADQSGLIKNLVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDY 166
             Q ++  I  R       +    + +A       +Q +             K+   +D+
Sbjct: 207 --QMMLVFITSRPKVFRVEQMVQLITEAFPQVVSIMQNVNDQNGNAIFGKDFKVLYGQDH 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
           + +R+        Y     SF Q N  +   + +  +  +     D+ ++ Y G G   L
Sbjct: 265 ITDRMLGND----YMVSAQSFYQVNTVMAEKLYQVAIDFSDLNAEDVVIDAYSGIGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A+   +V  VE+ + +V+ AR N   N ++N + V  S++   +   +E         
Sbjct: 321 SFAKKVKKVYGVEVIEAAVKDARKNAERNGIHNAEFVIGSAEATMEKWSKE--------- 371

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST-THTIE 342
                +   I VDPPR GL ++ +      A   I Y+SCNP ++ RD+ +     + ++
Sbjct: 372 ---GIKPSVILVDPPRKGLTESFIKASAAMAPKKITYVSCNPATMARDIKLYQELGYDLK 428

Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366
           ++   D FP+T H+EC VLL R  
Sbjct: 429 KVQPVDLFPHTHHVECVVLLQRSK 452


>gi|325694948|gb|EGD36853.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK150]
          Length = 456

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 154/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +              +   +P+ YR +A+  +      L 
Sbjct: 83  LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 143 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L D   E    ++  +     Q          ++   +
Sbjct: 203 HYSGEIMVILVTTRPKIFRVEQLMDRLTEAFPAIKSIMQNINDQPGNAIFGKDWRMLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +  ++    D+ L+ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTTEDVVLDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+   +V  VE+   +VE ++ N A N + N   V   ++E  Q   +E       
Sbjct: 319 GLSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYVCAPAEEAIQNWLKE------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +        P I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQADVILVDPPRKGLTESFIKASVSMEPPKITYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E   LLVR
Sbjct: 427 LKKVQPVDLFPQTHHVEAVSLLVR 450


>gi|317127543|ref|YP_004093825.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
           2522]
 gi|315472491|gb|ADU29094.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
           2522]
          Length = 469

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 154/390 (39%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K D +RQ    +   NL        I   EP  YR +++  + H 
Sbjct: 95  GCQLQHLSYEGQLKGKKDIVRQAFERYTKINLDKVDFHDTIGMEEPWKYRNKSQMQVGHH 154

Query: 55  GDDLYHIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPL--------LRAK 103
              +   ++   + + + ++  +   P +  +  ++ ++ A + + P         LR  
Sbjct: 155 QGKVIAGLYSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPYNERKRTGVLRTI 214

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++ + T +    +VT        D + E    ++  L      +Q I    KT +   
Sbjct: 215 VTRVGFETGEYQVVLVTAKKDIPKVDLFIE---AIKQRLPDVTSIVQNINP-KKTSLVFG 270

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYC 218
            +    Y  E++        +     +F Q N      + +    AA    +  +++ YC
Sbjct: 271 DETIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQTKKLYDAAKEAAQLTGKEKVVDAYC 330

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     +  +++ K S+E A+ N  A+ + N   V   ++           
Sbjct: 331 GVGTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKAEHL--------- 381

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
              L + +   +    + VDPPR+GLD+  +  +       I+Y+SCNP +L +++  LS
Sbjct: 382 ---LPEWEKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDALS 438

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + ++ L   D FP T  +EC   +  K
Sbjct: 439 KGGYKLKALQPVDMFPQTAQVECVARIELK 468


>gi|229551874|ref|ZP_04440599.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           rhamnosus LMS2-1]
 gi|229314818|gb|EEN80791.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           rhamnosus LMS2-1]
          Length = 459

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 88/381 (23%), Positives = 157/381 (41%), Gaps = 38/381 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L I  Y  QL  K  +++++     +       I    P+ YR +A+  +     +L   
Sbjct: 93  LSILAYPAQLKFKQHQIQELYKKAHLAIKVLPTIGMKHPLGYRNKAQVPVRLVRGELQTG 152

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + + + I+ F+     I+  ++ +   +R              ++R  + +    
Sbjct: 153 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPPYDERTNRGVIRNIMVRRGRA 212

Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166
           T Q    +V   +    L+D   E  + L +          Q   +    K+K    RDY
Sbjct: 213 THQMMLVLVARTWQVPHLNDIVEEITLALPEVTSVVVNLNDQRTNVILGRKSKTIYGRDY 272

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           + ++L  +     ++    SF Q N      +    + A      + +++ Y G G  SL
Sbjct: 273 LLDKLLGSE----FQISPVSFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISL 328

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH  +V  VE+ + +V  A+ N A NH+ NV      +++  Q         + KD 
Sbjct: 329 TMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTFEVGKAEDVMQ---------KWKDA 379

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
           D+       + VDPPR GLD   +  V     P ++YISCNP +L RDL +L+   +T +
Sbjct: 380 DLP---VDVLMVDPPRKGLDKTFIDAVGYMKPPKMVYISCNPATLARDLQLLTAFGYTAK 436

Query: 343 RLALFDQFPYTRHMECGVLLV 363
                D FP T+H+E    L 
Sbjct: 437 ETQPVDMFPQTQHIESITALT 457


>gi|254992434|ref|ZP_05274624.1| hypothetical protein LmonocytoFSL_04674 [Listeria monocytogenes FSL
           J2-064]
          Length = 459

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 143/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++   +V +   + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQ--LVFIANSKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++       E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + I  +   D FP T H+E  VLL  K 
Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKD 458


>gi|290770981|emb|CBK33770.1| 23S rRNA m(5)U 1939 methyltransferase [Streptococcus pyogenes]
          Length = 451

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 146/379 (38%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 88  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 148 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 207 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 264 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N A N + N   V  +++       ++            
Sbjct: 324 KTVKAVYGVEVIEAAVRDAQQNAALNGITNAYFVADTAEHAMATWAKD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 372 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 432 PVDLFPQTHHVECVALLVK 450


>gi|294497204|ref|YP_003560904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
           B1551]
 gi|294347141|gb|ADE67470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
           B1551]
          Length = 461

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 150/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-------QVPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K D + Q            +     I   +P  YR +++F +  D
Sbjct: 88  GCQLQHLSYEGQLESKRDIVLQAFERHSSLKKVEEKTRQTIGMEDPWGYRNKSQFQVGVD 147

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPG-------SLLINALMIEMMATIRLEPLLRAKLFQI 107
              +   ++   +   + I+            +  I  ++ ++   I  E   R  +  I
Sbjct: 148 KQKVIAGLYGLNSHRLIDIENCPIQHGATNHVTKEIKRILQDLQIPIYNERKRRGIVRTI 207

Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
                 ++ +  + LI  +            ++  L   K  +Q +    KT +      
Sbjct: 208 VSRVGFETGEVQIVLITAKQEIPKKELLIKEIQRRLPEVKSLVQNVN-GQKTSLIFG--- 263

Query: 167 VDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217
            DE  T+AG+++I        +     +F Q N    V + + V  AA       +++ Y
Sbjct: 264 -DETFTLAGKSVIQETLGDISFELSARAFFQLNPLQTVKLYDEVKKAAALTGNEKIVDAY 322

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L LA+    +  ++  + S+  AR N   +   +   V   ++++     +E 
Sbjct: 323 CGVGTIGLWLAKDAKEIRGMDTIEESIVDARKNAKDHGFEHATYVTGPAEKWMPKWVKE- 381

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                       ++   I VDPPR+G DD  +  +       ++Y+SCNP +L +D+  L
Sbjct: 382 -----------GWKPDLIVVDPPRTGCDDKLLKTILQVKSKKVVYVSCNPSTLAKDVQQL 430

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           S  + ++ +   D FP+T H+E  V L  K 
Sbjct: 431 SKAYHVDYIQPVDMFPHTAHVENVVSLTLKK 461


>gi|160935446|ref|ZP_02082828.1| hypothetical protein CLOBOL_00341 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441804|gb|EDP19504.1| hypothetical protein CLOBOL_00341 [Clostridium bolteae ATCC
           BAA-613]
          Length = 553

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 141/386 (36%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH- 60
              LL  +Y +QLA K  +  +++         I   +P HYR +       D       
Sbjct: 184 GCQLLDMEYAKQLAFKQKQAEELLKGLCPVKPIIGMKDPFHYRNKVHAVFDRDKKGNIIS 243

Query: 61  IMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDY 109
            ++++ T   + ++  +  +   + +            I          LLR  L +  +
Sbjct: 244 GIYEENTHHVIPVEKCLIENQKADEIIGTIRGMLKSFKIRTYDEDTGFGLLRHVLIRKGF 303

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
            T +    +VT      +  +       LR+        +Q I          +K  +  
Sbjct: 304 STGEIMVVLVTA---SPVFPSKNNFVKALREKHPEITTIVQNINGRGTSMVLGDKEHVLY 360

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            + Y+ + L        +R    SF Q N      + E  L+       + +++ YCG G
Sbjct: 361 GKGYIVDELC----GCRFRISSKSFYQVNPVQTEILYEKALSLAGLTGQELVVDAYCGIG 416

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              ++ ++   +V+ VE+ + +V  A  N   N + N++     +  F   M        
Sbjct: 417 TIGIIASKAAGKVIGVELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNMAE------ 470

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338
                    +   + +DPPRSG  +  +  V       ++Y+SCNP++L RD+  +    
Sbjct: 471 ------QGEKADVVIMDPPRSGSTEEFMDAVGKLGAEKVVYVSCNPETLARDVRYMKKMG 524

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +      L D FP T H E  VLL +
Sbjct: 525 YRAAEAWLVDMFPGTVHTESIVLLQK 550


>gi|323448927|gb|EGB04820.1| hypothetical protein AURANDRAFT_12344 [Aureococcus anophagefferens]
          Length = 343

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 134/347 (38%), Positives = 204/347 (58%), Gaps = 16/347 (4%)

Query: 31  PNLQIFRSEPIHYRMRAEFHIWHDG------DDLYHIMFDQQTKERMRID--YFMPGSLL 82
           P  ++F SE   +RMRA F +W +G         + +M+++  + R  ++   F  GS  
Sbjct: 1   PAAEVFESERSGFRMRASFQVWREGSLDHGNQTRHLVMYERGDEARNPVECLDFPMGSDR 60

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           + +L+  + A ++ E  L  K+     LT+ +  A+++L Y+R L     + A     A 
Sbjct: 61  LRSLLPPLTAALQGE-TLGYKINDARLLTTLAGDALLSLTYNRPLA---GDDAWDAAAAD 116

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGR-TLIYRQIENSFTQPNAGINVHMLEW 201
            A  + ++++GR+ K K  +  D V E L V GR T  Y Q E +FTQPNA +   ML W
Sbjct: 117 FAAAHDVKVVGRSRKYKTAVGADEVREVLDVPGRGTCAYWQTEGAFTQPNANVCRSMLGW 176

Query: 202 VLAATKGI-QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +AAT     GDL ELYCGNG F++ LA +F RV+A E++K SV  AR N+AAN  +N +
Sbjct: 177 AVAATANRGHGDLCELYCGNGCFTVALAPNFRRVVATELSKASVALARRNLAANGNDNAR 236

Query: 261 IVRMSSKEFTQAMRREREFNRLKDID--IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           + ++S++EF +A    R F RL D    +      T+FVDPPR+GLD   V + + +  +
Sbjct: 237 VAKLSAEEFVEAFDGARTFGRLLDAGETLAFDALDTLFVDPPRAGLDATCVELARRFATV 296

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +Y+SCNP++L RD+++L+ TH + RLA FDQFPYT H+E GV+L RK
Sbjct: 297 VYVSCNPETLARDVALLAATHDVSRLAAFDQFPYTHHLEAGVVLERK 343


>gi|258539292|ref|YP_003173791.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|257150968|emb|CAR89940.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 453

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 88/381 (23%), Positives = 157/381 (41%), Gaps = 38/381 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L I  Y  QL  K  +++++     +       I    P+ YR +A+  +     +L   
Sbjct: 87  LSILAYPAQLKFKQHQIQELYKKAHLAIKVLPTIGMKHPLGYRNKAQVPVRLVRGELQTG 146

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + + + I+ F+     I+  ++ +   +R              ++R  + +    
Sbjct: 147 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPPYDERTNRGVIRNIMVRRGRA 206

Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166
           T Q    +V   +    L+D   E  + L +          Q   +    K+K    RDY
Sbjct: 207 THQMMLVLVARTWQVPHLNDIVEEITLALPEVTSVVVNLNDQRTNVILGRKSKTIYGRDY 266

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           + ++L  +     ++    SF Q N      +    + A      + +++ Y G G  SL
Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPIQTEVLYTKAIEAAGLTGKETVIDAYSGIGTISL 322

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH  +V  VE+ + +V  A+ N A NH+ NV      +++  Q         + KD 
Sbjct: 323 TMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTFEVGKAEDVMQ---------KWKDA 373

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
           D+       + VDPPR GLD   +  V     P ++YISCNP +L RDL +L+   +T +
Sbjct: 374 DLP---VDVLMVDPPRKGLDKTFIDAVGYMKPPKMVYISCNPATLARDLQLLTAFGYTAK 430

Query: 343 RLALFDQFPYTRHMECGVLLV 363
                D FP T+H+E    L 
Sbjct: 431 ETQPVDMFPQTQHIESITALT 451


>gi|306827133|ref|ZP_07460425.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304430686|gb|EFM33703.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 462

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 149/380 (39%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 99  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A++N A N + N   V  +++       ++            
Sbjct: 335 KTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKD------------ 382

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC VLL+++
Sbjct: 443 PVDLFPQTHHVECVVLLIKE 462


>gi|222153321|ref|YP_002562498.1| RNA methyltransferase [Streptococcus uberis 0140J]
 gi|222114134|emb|CAR42611.1| putative RNA methyltransferase [Streptococcus uberis 0140J]
          Length = 453

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 145/379 (38%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y+QQL  K  +++  +      N       I   EP  YR +A+  +      L    F 
Sbjct: 88  YDQQLLFKAKQVKDNLYKTAGINSVEVLPTIGMEEPYAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  F      I+ L            +          L++  + +  + + Q
Sbjct: 148 KNSHDLLPISDFYIQDKEIDKLILFVRDLLRRYEVSPYDEKEKTGLIKNLVVRRGHYSGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
                VT        D   E       ++   +     Q          K+   +DY+ +
Sbjct: 208 MMLVFVTSRPKVFRVDQMVEKITEAFPQVVSIMQNINDQNGNAIFGRDFKVLYGQDYIMD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +        YR    SF Q N  +   + +  +  ++  + D+ ++ Y G G   L  A
Sbjct: 268 SMLGND----YRISAQSFYQVNTLMAEKLYQTAIDFSELSKDDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           ++  +V  VE+ + +V+ A+ N   N + N   V  S++   +   +E            
Sbjct: 324 KNVKKVYGVEVIEAAVKDAQKNAERNGIRNATYVVDSAESAMEKWTKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +    A     I Y+SCNP ++ RD+       + ++++ 
Sbjct: 372 GIKPSVILVDPPRKGLTESFIEASVAMKPQKITYVSCNPATMARDIKRYQELGYDLKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP+T H+EC VL+ R
Sbjct: 432 PVDLFPHTHHVECVVLMSR 450


>gi|319744421|gb|EFV96779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae
           ATCC 13813]
          Length = 452

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/388 (21%), Positives = 154/388 (39%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  QY++QL  K D +RQ ++ F+    +       I  SEP HYR + +F +   
Sbjct: 81  GCQIMHLQYDKQLEFKTDIIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111
           G ++   ++ Q T   + I   +    L   ++    E++   +L      K+  +  + 
Sbjct: 141 GGNVKAGLYAQGTHRLIDIKDCLVQDSLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200

Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160
            +    S +  +  I  + LD  + +  I L       K     I  +         T++
Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219
              ++ ++E +   G +L       +F Q N      +  E V A       DL++ YCG
Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A     V  ++I   +++ A+ N       N       +++       E   
Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDIIPRWYSE--- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
                     +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+ 
Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L +K
Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQKK 450


>gi|295104063|emb|CBL01607.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii SL3/3]
          Length = 476

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 146/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60
              LL   Y +QL +K +++R ++  +   +      +P HYR +         G  L  
Sbjct: 12  GCPLLGLDYAEQLKQKEEKVRALVGKYGPVHPIRGMEQPYHYRNKVISTFATGWGGKLTS 71

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
            ++   + + + ++  +    +++  M  + A                 LLR  L +   
Sbjct: 72  GIYAANSHKVLPVESCLLQDEVLDKTMQAVRAAANACRYQSYDEDKGTGLLRHCLLRRGV 131

Query: 110 LTSQSDQAIVTL--------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            T Q    +VT          + + L     +  + +   +     +   +      K+ 
Sbjct: 132 ATGQVMVVLVTAQPVLPGAKNFVKALLTEAAQRGVTVTTVVQNVNSRKTSVVLGEAEKVL 191

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             + ++ + L        Y     SF Q N      +    + A K    ++ L+ YCG 
Sbjct: 192 YGKGFILDTLCGK----TYAISPRSFYQVNPAQTAVLYGLAVEAAKLTGKEVVLDAYCGI 247

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L  A H  +V+ VE+ + +V+ A  N   N V N +     +              
Sbjct: 248 GTIGLTAADHAKQVVGVELNRDAVQDAIGNARHNGVKNARFFAADAT------------R 295

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337
            +++      +   IF+DPPR G     +  V   A   ++Y+SCNP +L RDL+ L+  
Sbjct: 296 WIREAAAAGEKADVIFMDPPREGSTPEFLASVARMAPKRVVYVSCNPVTLARDLATLTKL 355

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  E     D FP+T H+E  VLL +
Sbjct: 356 GYKAEGFTPVDMFPHTEHVETVVLLSK 382


>gi|227892264|ref|ZP_04010069.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC
           11741]
 gi|227865905|gb|EEJ73326.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC
           11741]
          Length = 456

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 154/379 (40%), Gaps = 40/379 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
            Y  QL  K   +  ++    + NL++        P +YR +A+  +      L    F 
Sbjct: 92  SYPAQLKFKRKLVTDLLQKVHLDNLEVANTLGMETPYYYRNKAQVPVREVNGKLEIGFFK 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113
           + +   + +++F+     I+ ++I++   +R+  +           +R  L +  Y + +
Sbjct: 152 RNSHNFVAMEHFLIQDKRIDEILIKVRDILRMSKITAYNEEKHTGMIRHILVRRGYYSHE 211

Query: 114 SDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
           +   +V+ +      D      ++    ++  +         +    KT     +D + +
Sbjct: 212 AMVVLVSRVRKIPNLDQIAFLIQQQCPDVKSVMLNVNPDKTNVILGKKTIKLAGKDTIQD 271

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228
            L      L +     SF Q N      + +  +  A    +  +++ YCG G  SL +A
Sbjct: 272 TL----NGLKFDISAQSFYQVNPQQTEKLYQLAIENAELTGKETVIDAYCGIGTISLNMA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  VEI   ++E A++N + N ++N+      ++ + +  ++             
Sbjct: 328 KFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEKWQK------------Q 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIER-L 344
             +   I VDPPR GL  + +    A     I+Y+SCNP +L RD+   +   + + + +
Sbjct: 376 GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKIVYVSCNPATLVRDIQEFMELGYQVTKPI 435

Query: 345 ALFDQFPYTRHMECGVLLV 363
              DQFP T H+E   +L 
Sbjct: 436 QPVDQFPQTTHVESVTVLE 454


>gi|325690901|gb|EGD32902.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 464

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 153/384 (39%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +              +   +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L D   E    ++  +     Q        + ++   +
Sbjct: 216 HYSGEIMVILVTTRPKIFRVEQLIDRLTEAFPAIKTIIQNINDQNTNAIFGKEWRVLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +      + D+ ++ Y G G  
Sbjct: 276 DYIMDQMLGNN----FQISGPAFYQVNTQMAEKLYQTAIDFADLREDDVVIDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N + N   V  +++   +   +E       
Sbjct: 332 GLSVAKHVKEVYGVEVIPEAVENSQKNATLNGITNAHYVCDTAENAMKTWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+EC  LLV+
Sbjct: 440 LKKVQPVDLFPQTHHVECVALLVK 463


>gi|323127600|gb|ADX24897.1| tRNA (uracil-5-)-methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 543

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 146/385 (37%), Gaps = 40/385 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +           N  I    P+ YR +A+  +      L    F 
Sbjct: 88  YEDQLRFKQKQVQDNLYKIAGINDVTVNQTIGMDNPLAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            ++         L+R  + +  + +  
Sbjct: 148 KHSHDLVPISDYYIQDKEIDRLINFTRELLRRFDVKPYDEKEQTGLIRHIVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 207 --EMMLVLVTTRPKVFRVDQVISKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +T +     +     SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A
Sbjct: 264 TITDSMLGNDFAISAQSFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V+ A+ N A N + NV  V  +++       +E            
Sbjct: 324 KTVKAVYGVEVIEAAVKDAQQNAARNGITNVHFVADTAENAMATWAKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 372 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370
             D FP T H+E   LL +     H
Sbjct: 432 PVDLFPQTHHVETVALLSKLNVDKH 456


>gi|261404859|ref|YP_003241100.1| TrmA family RNA methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261281322|gb|ACX63293.1| RNA methyltransferase, TrmA family [Paenibacillus sp. Y412MC10]
          Length = 523

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 142/436 (32%), Gaps = 88/436 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29
              L    Y  QL  K   +   +                                    
Sbjct: 105 GCQLQHMNYAGQLEWKRQLVVDNLERIGKLRVVRESAIAGETCVDDKRSGTDGGGDIEIS 164

Query: 30  -------------------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
                              +    +  SEP  YR +++  I      L    + + +   
Sbjct: 165 ETNGTNPAVSGVESDQEGILVRPTLGMSEPWRYRNKSQVPIGVTEGGLVGGFYARGSHRI 224

Query: 71  MRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           + ++  +               +   L I        + LLR  + +I + T +    +V
Sbjct: 225 VDMETCLIQHEQNDEVVSRVKAIGRKLGITAYNEETGQGLLRHVVVKIGFATREMMIVLV 284

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAG 175
           T        + W      +R  L A     Q +    KT +         +  E +    
Sbjct: 285 TNGERIPRVNEW---IAAIRKELPAVVSICQNVNT-RKTNVIFGDVTRVLWGREVIHDYI 340

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR 233
             + +     SF Q N      +    +    G+ G+  +++ YCG G  SL LA+H  +
Sbjct: 341 GDVKFAISARSFYQVNPAQTEVLYGKTVE-YAGLTGEETVIDAYCGIGTISLFLAQHAKK 399

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  VEI K ++E AR N   N + +V+    +S++     +                   
Sbjct: 400 VYGVEIVKEAIEDARANAELNGMKHVEFEVGASEDVIPRWKE------------QGIEAD 447

Query: 294 TIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQF 350
            I VDPPR G D   +  +       ++Y+SCNP +L RDL IL    +    +   D F
Sbjct: 448 VIVVDPPRKGCDPRLLETILEMKPERVVYVSCNPSTLARDLRILEDGGYRTVEVTPVDMF 507

Query: 351 PYTRHMECGVLLVRKP 366
           P+T H+E   +LV K 
Sbjct: 508 PHTVHVESVAVLVWKD 523


>gi|332362548|gb|EGJ40348.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1056]
          Length = 465

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 156/385 (40%), Gaps = 40/385 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +              +   +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 216 HYSGEIMLILVTTRPKIFRVEQLMEHLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +  ++    D+ L+ Y G G  
Sbjct: 276 DYITDQMLGHD----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTSDDVVLDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+   +V  VE+   +V+ +R N A N + N   V   ++E  Q   +E       
Sbjct: 332 GLSVAKQVKQVYGVEVIPEAVKNSRKNAAINGITNASYVCAPAEEAIQNWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   V   P  I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++++   D FP T H+EC  LLV++
Sbjct: 440 LKKVQPVDLFPQTHHVECVNLLVKR 464


>gi|332652524|ref|ZP_08418269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae
           bacterium D16]
 gi|332517670|gb|EGJ47273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcaceae
           bacterium D16]
          Length = 452

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 151/386 (39%), Gaps = 39/386 (10%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
            G       YE++L  K DR+   +      +L++       +P+ YR + +  +     
Sbjct: 81  GGCQYRHMTYEEELTAKWDRVNDALRRLGGLDLELPPVLGAEDPLRYRNKVQLPVAQGKQ 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-------EPLLRAKLFQIDY 109
            L    F  ++ + + +       L +  L     A +         E   +  +  +  
Sbjct: 141 GLSIGYFRPRSHDVLDVKDCPLQPLAVTRLREAFKAWMEQWSVPAYDESTCQGLIRHLYV 200

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-------L 162
            T+Q+ Q++  ++ +        E    LR A       +  I +A+   I         
Sbjct: 201 RTNQAGQSLCCVVANGKKLPQVSELVEALRKAEPGLIGLVLNINQADTNVILGPEYRTLW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            +D+++E L      + +R    SF Q N      +    +  A    Q  +L+LYCG G
Sbjct: 261 GQDFLEETLC----GMTFRLSVPSFFQINWAQTQRLYAQAVDFAALTGQETVLDLYCGIG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA+   RV+  EI   ++E A+ N A N V N +     +      + RE     
Sbjct: 317 TISLALAQKAGRVIGAEIVPQAIEDAKANAARNKVENTRFFCGDAGAVAAQLARE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338
                    R + I VDPPR GL      ++   A   I+Y+SC+P +L RD   L    
Sbjct: 372 -------GVRPQVICVDPPRKGLAPEVPAILASMAPERIVYVSCDPATLARDAKRLEELG 424

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +   ++   D FP T H+E  +LLVR
Sbjct: 425 YRAIKVQAVDLFPRTAHVETVLLLVR 450


>gi|116873139|ref|YP_849920.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742017|emb|CAK21141.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 458

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 142/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPAKLKIRPTIGMEDPWRYRNKSQFQTRLV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++          
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDV--------- 371

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
              L       +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 372 ---LPKWVNDGFRPDAVIVDPPRSGCDQGLIKSLLEVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + I  +   D FP T H+E  VLL  K 
Sbjct: 429 KKYRIRYMQPVDMFPQTAHVETVVLLQLKN 458


>gi|199597359|ref|ZP_03210790.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           rhamnosus HN001]
 gi|199591875|gb|EDY99950.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           rhamnosus HN001]
          Length = 458

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 157/381 (41%), Gaps = 38/381 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L I  Y  QL  K  +++++     +       I    P+ YR +A+  +     +L   
Sbjct: 90  LSILAYPAQLKFKQHQIQELYKKAHLAIKVLPTIGMKHPLGYRNKAQVPVRLVHGELQTG 149

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + + + I+ F+     I+  ++ +   +R              ++R  + +    
Sbjct: 150 FYKKHSHDLVPIEDFLIQDPKIDQAIVVVRDLLRKYQVPPYDERTNRGVIRNIMVRRGRA 209

Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166
           T Q    +V   +    L+D      + L +          +   +    K+K    RDY
Sbjct: 210 TQQMMIVLVARTWQVPHLNDIVEGITLALPEVTSVVVNLNDKRTNVILGRKSKTIYGRDY 269

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           + ++L  +     ++    SF Q N      +    + A      + +++ Y G G  SL
Sbjct: 270 LLDKLLGSE----FQISPVSFYQVNPIQTEVLYTKAIEAAALTGKETVIDAYSGIGTISL 325

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH  +V  VE+ + +V  A+ N A NH+ NV      +++  Q         + KD 
Sbjct: 326 TMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTFEVGKAEDVMQ---------KWKDA 376

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
           D+       + VDPPR GLD   +  V     P ++YISCNP +L RDL +L+   +T +
Sbjct: 377 DLP---VDVLMVDPPRKGLDKTFIDAVGYMKPPKMVYISCNPATLARDLQLLAAFGYTAK 433

Query: 343 RLALFDQFPYTRHMECGVLLV 363
                D FP T+H+E   LL 
Sbjct: 434 ETQPVDMFPQTQHIESVTLLE 454


>gi|22536596|ref|NP_687447.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|77411313|ref|ZP_00787662.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           CJB111]
 gi|50401577|sp|Q8E1E4|Y413_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0413
 gi|22533432|gb|AAM99319.1|AE014210_9 RNA methyltransferase, TrmA family [Streptococcus agalactiae
           2603V/R]
 gi|77162649|gb|EAO73611.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           CJB111]
          Length = 451

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 154/388 (39%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  QY++QL  K D +RQ ++ F+    +       I  SEP HYR + +F +   
Sbjct: 81  GCQIMHLQYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111
           G ++   ++ Q T   + I   +    L   ++    E++   +L      K+  +  + 
Sbjct: 141 GGNVKAGLYAQGTHRLIDIKDCLVQDSLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200

Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160
            +    S +  +  I  + LD  + +  I L       K     I  +         T++
Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219
              ++ ++E +   G +L       +F Q N      +  E V A       DL++ YCG
Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A     V  ++I   +++ A+ N       N       +++       E   
Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHYEAGKAEDIIPRWYSE--- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
                     +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+ 
Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L RK
Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQRK 450


>gi|322517378|ref|ZP_08070253.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
           ATCC 49124]
 gi|322124075|gb|EFX95628.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
           ATCC 49124]
          Length = 451

 Score =  275 bits (704), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 151/386 (39%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L+  +Y++QL  K D L Q +  F+  N +       I   +P HYR + +F     
Sbjct: 81  GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRQTIGMEQPQHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYLT 111
           G  +   +F + +   + ID  +    L  A+M +   ++   +L      K+  I  + 
Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAMMNKVTSLLDKYKLPIYNERKISGIRTVM 200

Query: 112 SQ----SDQAIVTLIYHRL--LDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKICL 162
            +    S+Q  +  +  +   L    +E  +R  + +       Y         +T+I  
Sbjct: 201 IRRALGSNQVQLIFVTSKSVSLTKLVKELTLRYPEIVTVAINYNYSKSSEIYGQETEIIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221
            +D + E +      L       +F Q N      +    + A        L++ YCG G
Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYSQAVEALEVDKDEHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A     +  ++I   ++E AR N  +  + N       +++      +E     
Sbjct: 317 TIGLAFANKVKSIRGMDIIPEAIEDARKNAKSLGLGNTHYEVGKAEDIIPRWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILDYTPEKMVYVSCNVSTLARDLVSLAKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|288871274|ref|ZP_06117059.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
 gi|288864049|gb|EFC96347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
          Length = 514

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 142/385 (36%), Gaps = 42/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60
              LL   Y++QL+ K  +L +++  +      I   +P HYR +      HD   +   
Sbjct: 142 GCQLLDMPYDKQLSLKQKQLEELLKPYCRVQPIIGMKDPFHYRNKVHAVFDHDKKGNPVS 201

Query: 61  IMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDY 109
            +++  T   + I+  +      + +            I+         LLR  L +  +
Sbjct: 202 GVYEANTHRVVPIESCLIEDQKADEIIGTIRGMLKSFKIKTFDEDTGYGLLRHVLIRRGF 261

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
            T      +VT      +  +       LR+        +Q I          ++  +  
Sbjct: 262 ATGDIMVVLVTA---SPVFPSKNNFVRALREKHPEITTIVQNINGRDTSMVLGDRENVLY 318

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            + Y+++ L        +R    SF Q N      +    +  A    +  +++ YCG G
Sbjct: 319 GKGYIEDILC----GFRFRISSKSFYQVNPVQTEVLYRKAIELAGLTGKETVIDAYCGIG 374

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              +V ++  DRV+ VE+ + +V  A  N   N + N +     +  F   M        
Sbjct: 375 TIGIVASQEADRVIGVELNRDAVRDAAQNAKINGIKNAQFYCNDAGAFMSKMAD------ 428

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338
                 +      +F+DPPRSG  +  +  V       ++Y+SC P++L RDL +     
Sbjct: 429 ------NGEHVDVVFMDPPRSGSTEEFIQSVAKIKPEKVVYVSCGPETLARDLGVFRKMG 482

Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363
           +  +     D FP   H+E  +++ 
Sbjct: 483 YEAKVAWGVDMFPQAAHVESVIMMQ 507


>gi|218134835|ref|ZP_03463639.1| hypothetical protein BACPEC_02738 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990220|gb|EEC56231.1| hypothetical protein BACPEC_02738 [Bacteroides pectinophilus ATCC
           43243]
          Length = 489

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/395 (21%), Positives = 152/395 (38%), Gaps = 36/395 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFR---SEPIHYRMRAEFHI 51
              L    YE QL  K +++   +           V +  +      EP HYR +A+F +
Sbjct: 89  GCQLQEMSYEAQLRFKQNKVANNLKRLGGLGEADYVMHPIVGMTAPDEPYHYRNKAQFPV 148

Query: 52  WHDGDDLYH-IMFDQQTKERMR-IDYFM--PGSLLINALMIEMMATIRLEPL-------- 99
             D D       +  +T + +  +D  +  P +  I  ++ + M    ++P         
Sbjct: 149 GCDRDGNIKIGFYAGRTHDIIDYMDCCIGDPVNKDILRIVRQWMTDNNIKPYNEENHSGV 208

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRAN 156
           +R  L +    T +    +V         D+      ++      +     +   +    
Sbjct: 209 VRHILIRTGRATGEICVCLVINADKLQRYDSLVGELAKIDGMTSIMINVNREKTNVILGR 268

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215
             +    R Y+++ +      + YR    SF Q N      M + VL   +    + + +
Sbjct: 269 HCETLWGRPYIEDCIG----DVRYRISPLSFYQVNPVQTKRMYDKVLEYAQLTGNEAVWD 324

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G  SL LA++  +V  VEI   ++E A  N A N+++N +     ++E      +
Sbjct: 325 LYCGIGTISLFLAKNAKKVYGVEIVPQAIEDAGNNAALNNIDNAQFFVGKAEEVVPEFYK 384

Query: 276 EREFNRLKDI--DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
                            R   I VDPPR G D + +  +   A P I+Y+SC+  +L RD
Sbjct: 385 NGGEGDTDSARSGADMLRPDVIVVDPPRKGCDTSLLDTMLEMAPPRIVYVSCDSATLARD 444

Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L  L  S  + +  +  +D F    H+E  V + R
Sbjct: 445 LKYLRESGRYEVRDVQCYDNFCQGVHVETVVWMSR 479


>gi|71903755|ref|YP_280558.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|71802850|gb|AAX72203.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS6180]
          Length = 555

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 146/385 (37%), Gaps = 40/385 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +              I  +EP+ YR +A+  +      L    F 
Sbjct: 99  YEDQLTFKKKQVQDSLYKIAGISDVTVESTIGMTEPLAYRNKAQVPVRRVNGQLETGFFR 158

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            I+         LLR  + +  + +  
Sbjct: 159 KHSHDLIPISDYYIQDKEIDRLINFTRDLLRRFDIKPYDETEQTGLLRNIVVRRGHYSG- 217

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +A  A    IQ I   N T     +D    Y  +
Sbjct: 218 --EMMLVLVTTRPKVFRVDQVIEKIVEAFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 274

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +   + D +++ Y G G   L  A
Sbjct: 275 TITDSMLGNNYAISAQSFYQVNTVMAEKLYQTAIAFSDLSKDDIVIDAYSGIGTIGLSFA 334

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A++N A N + N   V  +++       ++            
Sbjct: 335 KTVKAVYGVEVIEAAVRDAQHNAALNGITNAYFVADTAEHAMATWAKD------------ 382

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 383 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQELGYKLAKVQ 442

Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370
             D FP T H+E   LL +     H
Sbjct: 443 PVDLFPQTHHVETVALLSKLGVDKH 467


>gi|223985932|ref|ZP_03635968.1| hypothetical protein HOLDEFILI_03274 [Holdemania filiformis DSM
           12042]
 gi|223962119|gb|EEF66595.1| hypothetical protein HOLDEFILI_03274 [Holdemania filiformis DSM
           12042]
          Length = 458

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 89/383 (23%), Positives = 161/383 (42%), Gaps = 36/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDLY 59
              L    Y  QL  K ++++Q++  +   +  +  +EP  YR +  A F +   G  + 
Sbjct: 89  GCQLQHVDYPAQLDWKKEKVQQLLGRYGRVHDVLGMAEPWAYRNKVIATFSLSKKGK-VI 147

Query: 60  HIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP--------LLRAKLFQID 108
             ++++ + + +          +   I A + E+M  +R+EP        L+R  L ++ 
Sbjct: 148 AGIYEEDSHQLVAYSSCWIQDPIAEKILATVCELMTELRIEPYDEDQRTGLVRHCLIRVG 207

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV- 167
           ++   S + +V L+    +  A ++   RLR         +  +   N + +   ++ V 
Sbjct: 208 HV---SREVLVCLVCASPIFPARKQLIQRLRQRHPEITTIVMNVNSRNTSVVLGSQERVL 264

Query: 168 --DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
               ++      L +     SF Q N+     +    +  A    +  +L+ YCG G+ S
Sbjct: 265 VGTGKIQDELCGLKFSIAAKSFYQINSVQTEVLYGKAMELANLTGKERVLDAYCGIGSIS 324

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           LV A+    V+ VE+   SV  A  N   NH+ N   V   +  F +   RE        
Sbjct: 325 LVAAKAAKEVVGVEVNPVSVTNAIENARMNHLRNAWFVEADAGLFMEQAARE-------- 376

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTI 341
                  +  +F+DPPR+G D+  +  +       I+YISCNP +  RDL  L+   + +
Sbjct: 377 ----GQAYDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGYQV 432

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
             +   D FP T H+E  VLL R
Sbjct: 433 RTIVPVDLFPMTSHVETIVLLQR 455


>gi|327470743|gb|EGF16199.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK330]
          Length = 469

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 154/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +      +       +   +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYPAQLDFKRKQVKDSLYKIAGVSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 216 HYSGEIMIILVTTRPKIFRVEQLIEHLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  L  ++    D+ L+ Y G G  
Sbjct: 276 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTALDFSELTADDVVLDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE +R N   N + N   V   ++E  Q   +E       
Sbjct: 332 GLSVAKHVKEVYGVEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQDWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   V   P  I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E   LLVR
Sbjct: 440 LKKVQPVDLFPQTHHVEAVSLLVR 463


>gi|330832292|ref|YP_004401117.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3]
 gi|329306515|gb|AEB80931.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3]
          Length = 435

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D L+Q +  F+    +       I   +P HYR + +F     
Sbjct: 66  GCQIMHLRYDKQLDFKQDLLQQALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSF 125

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS----LLIN---ALMIEMMATIRLEPL---LRAKL 104
            D +   ++ + +   + I            +IN    L+ +    I  E     +R  +
Sbjct: 126 KDQVKAGLYAENSHRLIGITNCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVM 185

Query: 105 FQIDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q     +T       +L+D+   +    +  AL+  + +   I    KT+I 
Sbjct: 186 VRKARKTGQVQVIFITSCQVNLIKLIDELTSQFPSIITIALNWNRQKTSDI-YGEKTEIL 244

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
                +DE +        +     +F Q N      +  E V A       DL++ YCG 
Sbjct: 245 WGEQAIDEAVL----DYEFSLSPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGV 300

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    V  ++I   ++E A+ N     ++N       ++E      +E    
Sbjct: 301 GTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQE---- 356

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L RDL  LS  
Sbjct: 357 --------GYRADALVVDPPRTGLDEKLLKTILDYKPAKMVYVSCNVSTLARDLVELSKA 408

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP+T   E  V L +K
Sbjct: 409 YKVEYIQSVDMFPHTARTEAVVKLSKK 435


>gi|319938868|ref|ZP_08013232.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus 1_2_62CV]
 gi|319811918|gb|EFW08184.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus 1_2_62CV]
          Length = 453

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 157/387 (40%), Gaps = 40/387 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +Y +QL  K  ++R  +     + ++++        P+HYR +A+  +      L 
Sbjct: 83  LGHLKYSEQLKFKTKKVRDSLYKIAGIADIEVAPTLGMEHPLHYRNKAQVPVRRVNGQLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTS 112
              F + + + M I+ F     +I+ +++ +   +         E      +  I     
Sbjct: 143 TGFFRKNSHDLMPIEDFYIQDPVIDQVVLAVRDLLRRFDLKPYDEKEQSGLIRNIVVRRG 202

Query: 113 Q-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDR 164
             S + +V L+ +R       +   RL       K  +Q I           +  +   +
Sbjct: 203 HYSGEIMVILVTNRPKIFRINQLIERLVAQFPNIKSIMQNINDQPGNAILGKEFHVLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223
           DY+ +R+        ++    +F Q N  +   + +  +  A   I+  +++ Y G G  
Sbjct: 263 DYITDRMLDND----FQIAAPAFYQVNTEMAEKLYQTAIDFAELSIEDIVVDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N ++N   V  S++            N +K
Sbjct: 319 GLSVAKHVKEVYGVEVIPQAVENSKKNAELNGISNAHYVCDSAE------------NAIK 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   V   P  I+YISCN  ++ RD+ +     + 
Sbjct: 367 KWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIVYISCNVATMARDIKLYQELGYK 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           + ++   D FP T H+EC  L+ R  S
Sbjct: 427 LTKVQPVDLFPMTHHVECIALIQRVKS 453


>gi|300214964|gb|ADJ79380.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus salivarius CECT
           5713]
          Length = 456

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 156/379 (41%), Gaps = 40/379 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
            Y  QL  K   +  ++    + NL++        P +YR +A+  +      L    F 
Sbjct: 92  SYSAQLKFKRKLVTDLLQKVHLDNLEVADTLGMDTPYYYRNKAQVPVREVNGKLEIGFFK 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113
           + + + + +++F+     I+ +++++   +R+  +           +R  L +  Y + +
Sbjct: 152 RNSHDFVAMEHFLIQDKRIDEILLKVRDILRMSKITAYNEKKHTGMIRHILVRRGYYSHE 211

Query: 114 SDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
           +   +V+ +      D      ++  + ++  +         +    KT     +D + +
Sbjct: 212 AMVVLVSRVRKIPNLDQIAFLIQQQCLDVKSVMLNVNPDKTNVILGKKTIKLAGKDTIQD 271

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228
            L      L +     SF Q N      + +  +  A    +  +++ YCG G  SL +A
Sbjct: 272 TL----NGLKFDISAQSFYQVNPQQTEKLYQLAIENAELTGKETVIDAYCGIGTISLNMA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  VEI   ++E A++N + N ++N+      ++ + +  ++             
Sbjct: 328 KFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEKWQK------------Q 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIER-L 344
             +   I VDPPR GL  + +    A     ++Y+SCNP +L RD+   +   + + + +
Sbjct: 376 GIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVRDIQEFMELGYQVTKPI 435

Query: 345 ALFDQFPYTRHMECGVLLV 363
              DQFP T H+E   +L 
Sbjct: 436 QPVDQFPQTTHVESVTVLE 454


>gi|146318097|ref|YP_001197809.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           05ZYH33]
 gi|146320277|ref|YP_001199988.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           98HAH33]
 gi|253751287|ref|YP_003024428.1| RNA methyltransferase [Streptococcus suis SC84]
 gi|253753188|ref|YP_003026328.1| RNA methyltransferase [Streptococcus suis P1/7]
 gi|145688903|gb|ABP89409.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           05ZYH33]
 gi|145691083|gb|ABP91588.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           98HAH33]
 gi|251815576|emb|CAZ51159.1| putative RNA methyltransferase [Streptococcus suis SC84]
 gi|251819433|emb|CAR44912.1| putative RNA methyltransferase [Streptococcus suis P1/7]
 gi|292557857|gb|ADE30858.1| tRNA (uracil-5-)-methyltransferase [Streptococcus suis GZ1]
 gi|319757569|gb|ADV69511.1| tRNA (uracil-5-)-methyltransferase-like SAM-dependent
           methyltransferase [Streptococcus suis JS14]
          Length = 450

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D L+Q +  F+    +       I   +P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLDFKQDLLQQALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS----LLIN---ALMIEMMATIRLEPL---LRAKL 104
            D +   ++ + +   + I            +IN    L+ +    I  E     +R  +
Sbjct: 141 KDQVKAGLYAENSHRLIGITNCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q     +T       +L+D+   +    +  AL+  + +   I    KT+I 
Sbjct: 201 VRKARKTGQVQVIFITSCQVNLIKLIDELTSQFPSIITIALNWNRQKTSDI-YGEKTEIL 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
                +DE +        +     +F Q N      +  E V A       DL++ YCG 
Sbjct: 260 WGEQAIDEAVL----DYEFSLSPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    V  ++I   ++E A+ N     ++N       ++E      +E    
Sbjct: 316 GTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L RDL  LS  
Sbjct: 372 --------GYRADALVVDPPRTGLDEKLLKTILNYKPAKMVYVSCNVSTLARDLVELSKA 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP+T   E  V L +K
Sbjct: 424 YKVEYIQSVDMFPHTARTEAVVKLSKK 450


>gi|253755011|ref|YP_003028151.1| RNA methyltransferase [Streptococcus suis BM407]
 gi|251817475|emb|CAZ55216.1| putative RNA methyltransferase [Streptococcus suis BM407]
          Length = 450

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D L+Q +  F+    +       I   +P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLDFKQDLLQQALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS----LLIN---ALMIEMMATIRLEPL---LRAKL 104
            D +   ++ + +   + I            +IN    L+ +    I  E     +R  +
Sbjct: 141 KDQVKAGLYAENSHRLIGITNCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q     +T       +L+D+   +    +  AL+  + +   I    KT+I 
Sbjct: 201 VRKARKTGQVQVIFITSCQVNLIKLIDELTSQFPSIITIALNWNRQKTSDI-YGEKTEIL 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
                +DE +        +     +F Q N      +  E V A       DL++ YCG 
Sbjct: 260 WGEQAIDEAVL----DYEFSLSPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    V  ++I   ++E A+ N     ++N       ++E      +E    
Sbjct: 316 GTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L RDL  LS  
Sbjct: 372 --------GYRADALVVDPPRTGLDEKLLKTILNYKPAKMVYVSCNVSTLARDLVELSKA 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP+T   E  V L +K
Sbjct: 424 YKVEYIQSVDMFPHTARTEAVVKLSKK 450


>gi|153854051|ref|ZP_01995384.1| hypothetical protein DORLON_01375 [Dorea longicatena DSM 13814]
 gi|149753433|gb|EDM63364.1| hypothetical protein DORLON_01375 [Dorea longicatena DSM 13814]
          Length = 470

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 158/403 (39%), Gaps = 49/403 (12%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---------IFRS----EPIHYRMRA 47
            G  + + +Y  QLA K  ++R  +        +         +       +P  YR +A
Sbjct: 80  GGCQIQEMKYPAQLAFKEAKVRGNLERIGEVPTELLDQIMHPAVGMDGEGMQPFRYRNKA 139

Query: 48  EFHIWHDGDDL-YHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIR 95
           +F I  D D       +  +T   +       G  +           +    I     ++
Sbjct: 140 QFPIGTDKDGRVIAGFYAGRTHSIIENTDCALGVEVNEEILNCILDFMEEFKIPAYDEVK 199

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ARKYQI 149
            + L+R  L +  +   ++D+ +V L+ +        +   RLR          +     
Sbjct: 200 HKGLVRHVLLRYGF---KTDEIMVCLVINGKTIPHCHDLVGRLRQIPGMTSITLSTNTAK 256

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
             +   +  ++   ++++ + +      + Y+    SF Q N      +    L    G+
Sbjct: 257 TNVIMGDTIRLLWGQEFITDYIG----EIKYQISPLSFYQVNPVQTEKLYGLALD-YAGL 311

Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G+  + +LYCG G  SL LA+   +V  VEI   +++ A+ N   N + N +     ++
Sbjct: 312 TGNEAVWDLYCGIGTISLFLAKKAKQVYGVEIVPQAIDDAKNNAKINDITNAEFYVGKAE 371

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNP 325
           E      +E E    K  +  +     I VDPPR G +++ +  +       ++Y+SC+ 
Sbjct: 372 EVLPEYYKEYE----KTHNGETAHADVIVVDPPRKGCEESLLQTIVDMQPEKVVYVSCDS 427

Query: 326 DSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +L RD+  L +  + ++ +   DQFP+T H+E    L R  S
Sbjct: 428 ATLARDVKFLRANGYELKDVTPVDQFPHTVHVEVVCCLHRVNS 470


>gi|77413725|ref|ZP_00789907.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
 gi|77160216|gb|EAO71345.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
          Length = 451

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 85/388 (21%), Positives = 153/388 (39%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  QY++QL  K D +RQ ++ F+    +       I   EP HYR + +F +   
Sbjct: 81  GCQIMHLQYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMPEPEHYRAKLQFQVRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111
           G ++   ++ Q T   + I   +    L   ++    E++   +L      K+  +  + 
Sbjct: 141 GGNVRAGLYAQGTHRLIDIKDCLVQDRLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200

Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160
            +    S +  +  I  + LD  + +  I L       K     I  +         T++
Sbjct: 201 IRRAQASGEIQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219
              ++ ++E +   G +L       +F Q N      +  E V A       DL++ YCG
Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVNALDVKEDDDLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A     V  ++I   +++ A+ N       N       +++       E   
Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDIIPRWYSE--- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
                     +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+ 
Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L RK
Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQRK 450


>gi|322517118|ref|ZP_08070002.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
           ATCC 49124]
 gi|322124268|gb|EFX95779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
           ATCC 49124]
          Length = 452

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 152/382 (39%), Gaps = 40/382 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61
              YE+QL  K  ++   +     + ++++        P  YR +A+  +      L   
Sbjct: 85  HMTYEEQLKFKRKQVVDNLYKTAGISDVEVAETLGMDTPYAYRNKAQVPVRRVKGQLETG 144

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110
            + + + + + I+ F+     I+ L++   +++    L+P        L+R  + +  + 
Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166
           + Q     VT    R       +   ++ +A  +    IQ I   N T     ++    Y
Sbjct: 205 SGQMMLVFVT---TRPKVFRIDQIIAKITEAFPSVVSIIQNINDKN-TNAIFGKEFRTLY 260

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225
             + +T +     Y     SF Q N  +   + +  +  +       +++ Y G G   L
Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A+    V  VE+ + +VE A+ N   N + N   V  S++       ++         
Sbjct: 321 SFAKQVKEVYGVEVIETAVEDAKKNAECNGITNAHYVADSAENAMAKWSKD--------- 371

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342
                +   I VDPPR GL ++ +   V   P  I Y+SCNP ++ RD+       + ++
Sbjct: 372 ---GIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKRYQELGYELK 428

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           ++   D FP T H+E   LLVR
Sbjct: 429 KVQPVDLFPQTHHVEVVSLLVR 450


>gi|222153492|ref|YP_002562669.1| RNA methyltransferase [Streptococcus uberis 0140J]
 gi|222114305|emb|CAR42966.1| putative RNA methyltransferase [Streptococcus uberis 0140J]
          Length = 451

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 146/388 (37%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y QQL  K D +RQ +  F+    +       I    P HYR + +F     
Sbjct: 82  GCQIMHLAYPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDNPWHYRAKLQFQTRSF 141

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++ + +   + ID  +               L++   I +    ++E  LR  
Sbjct: 142 SGKVVAGLYAEGSHRLIPIDNCLVQDQSTQEIVNHITQLLDQYKIPIYNERKIEG-LRTI 200

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKI 160
           + +   + SQ+ Q I        L     +       ++                +KT+I
Sbjct: 201 MIR-KAIASQTLQIIFITSKEVHLAPIILDMTKTYPEIKTVALNINRSKSSELYGDKTEI 259

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              +D ++E +        +     +F Q N      +   V+ A +  + D +++ YCG
Sbjct: 260 IWGQDTIEEEVL----DYHFALSPRAFYQLNPKQTSVLYAQVVEALEVSESDHIIDAYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G      A+    +  ++I   ++E A+ N       N       +++      ++   
Sbjct: 316 VGTIGFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGKAEDIIPKWYQD--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                     YR   I VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  LS 
Sbjct: 373 ---------GYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVELSK 423

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +T++ +   D FP+T   E  V L RK
Sbjct: 424 VYTVDYIQSVDMFPHTARTEAVVKLRRK 451


>gi|313904339|ref|ZP_07837717.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6]
 gi|313470889|gb|EFR66213.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6]
          Length = 437

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 153/390 (39%), Gaps = 46/390 (11%)

Query: 2   SGTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDL 58
            G + +   YE+QLA K  ++R +M              P HYR +  A F    DG  +
Sbjct: 66  GGCVYLRHTYEEQLAIKEKQVRCLMEGIAKVRPVTGMENPYHYRNKVNAAFQRKRDGK-I 124

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQI 107
              ++++ T   + +   +      + +            + +        LLR  + + 
Sbjct: 125 VSGIYEEGTHNVIPVSSCLIEDQKADEIIGTIRRLALSFKVRIYDEDHGSGLLRHVMIRR 184

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD---- 163
            +++    Q +V L+    +  +       LR A H     + L     +T + L     
Sbjct: 185 GHVSG---QILVILVVASPVFPSKNNFVKALRAA-HPEITSVVLNVNDKQTSMVLGSRNI 240

Query: 164 ----RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
               + Y+++ L        +R   +SF Q N+     +    +  A    +  + + YC
Sbjct: 241 TLYGKGYIEDILC----GCRFRISPSSFYQINSVQTEKLYGKAIELAELTGEETVFDAYC 296

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   +  +    RV+ VE+ K +V  A  N   N + N++     +  F         
Sbjct: 297 GIGTIGITASAGAGRVIGVELNKDAVRDAAINAKLNDIPNIRFYADDAGRF--------- 347

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
              L ++     +   +F+DPPRSG  +  +          I+Y+SC+P+++ RDL  L 
Sbjct: 348 ---LTEMAARGEKADVLFMDPPRSGSTEVFMKAAFEMEPSRIVYVSCDPETMARDLRYLR 404

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + +  +  FD FP+TR +EC  +L RK 
Sbjct: 405 KNYNVGEIWPFDMFPWTRSIECVTVLKRKN 434


>gi|257875474|ref|ZP_05655127.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC20]
 gi|257809640|gb|EEV38460.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
           EC20]
          Length = 458

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 152/391 (38%), Gaps = 43/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              L    Y++QL  K D L+Q +  F+    Q F          P HYR +A+F + ++
Sbjct: 84  GCQLQHLVYDKQLDFKKDLLKQALEKFKPKGYQQFELRDTLGMDVPWHYRNKAQFQLRYN 143

Query: 55  G--DDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                +   +++ ++   + ID  +               L+N   I +    +   +LR
Sbjct: 144 SQTKRIEAGLYEMESHRLVAIDDCLVQEQDTQKVINGIVQLLNKYQIPIYDERKNSGILR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + +I   T +     +T        +A  RE   RL      +   + +   +    +
Sbjct: 204 TLMVRIGIATGEVQVVFITNSIKLPQKNALIREINQRLPQVVSIMQNVQNKKTSVVMGEE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++ERL      L +     +F Q N      +  E + A        +++ 
Sbjct: 264 TIHLSGKEAIEERL----NELTFDLSARAFFQLNPQQTSILYQEGLKALDLSKNETVVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A +   V  ++I   ++E A+ N       N      +++E       E
Sbjct: 320 YCGVGTIGLSVAPYAKEVRGMDIIPQAIENAQENARRIGAQNTHYETGTTEELLPKWFNE 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                        ++  +I VDPPR+GLD+  +  +   P   ++YISCN  +L RDL  
Sbjct: 380 ------------GFKPDSIIVDPPRTGLDERLLQALLKQPPKKMVYISCNVSTLARDLVQ 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L+    +E L   D FP T   E  V L RK
Sbjct: 428 LAKVFHVEYLQSVDMFPQTARCEVVVKLTRK 458


>gi|134300101|ref|YP_001113597.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
 gi|134052801|gb|ABO50772.1| 23S rRNA m(5)U-1939 methyltransferase [Desulfotomaculum reducens
           MI-1]
          Length = 457

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 144/389 (37%), Gaps = 44/389 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y++QL  K   +   +              +    P HYR +    +     
Sbjct: 83  GCQLQHLDYQEQLTYKRSVVESALFKIGGLKGVEVLPTLGMRNPWHYRNKIHLQVKEAKG 142

Query: 57  DLYHIMFDQQTKER-------------MRIDYFM-PGSLLINALMIEMMATIRLEPLLRA 102
            +    + + + E                I+  +     LIN+  +          LLR 
Sbjct: 143 RIKLGFYAEGSYELAAGLAGQSCLLVQKEINQVIAILEELINSYKLTPYHWGEKRGLLRH 202

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKT 158
            + +  + + Q    +VT       ++A+    +    ++   +         I    + 
Sbjct: 203 VMIRQGFHSGQCMVVLVTSPEEWQAENAFSRALVARQPKIVSVIRNINRNPGRIVLGEEN 262

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
           ++   ++Y+ + L      L +    NSF Q N      + +     A       +++ Y
Sbjct: 263 RVMYGKEYIVDEL----NGLNFNISANSFYQVNTLQTEELYQKAKEFAQLQGHERVIDAY 318

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L LAR    V+ +EI  P+V  A+ N   N + N K  + + ++    M ++ 
Sbjct: 319 CGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNTKFFQGAVEKLLPRMAKDL 378

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                        +   + +DPPR G +   +  +     P I+Y+SC+P +L RDL +L
Sbjct: 379 -------------KPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLARDLGVL 425

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLV 363
               +   ++   D FP+T H+EC VL+ 
Sbjct: 426 DKLGYQTLQVQPVDMFPWTYHVECVVLMS 454


>gi|116493111|ref|YP_804846.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103261|gb|ABJ68404.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC
           25745]
          Length = 455

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 153/383 (39%), Gaps = 39/383 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L    Y+ QL  K ++++ ++    + +L++        P  YR +A+  +      L  
Sbjct: 88  LQHITYDAQLKFKQNQIKNLLKKSHLEDLEVADTVGMENPTGYRNKAQIPVRKIKGKLQT 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDY 109
             F + + + + I+ F     +I+ +++E+                 + ++R  + +   
Sbjct: 148 GFFKRNSHDLVPIEDFYIQDPVIDKVIVEVRDILREFYIDPYREAENKGIIRNIMVRRGR 207

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICLDRDY 166
            + Q    ++T            E    +      +    Y+   +   ++ ++      
Sbjct: 208 RSGQIMVVLITRTKDVPHLAEITEAIAAIDGVVSVIQNINYKQTNVIMGDEDRVLAGESV 267

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225
           + + L      L +    +SF Q N      + +  +  A    +  ++++Y G G  SL
Sbjct: 268 IHDELL----GLDFIISAHSFYQVNPIQTEKLYQLAIDKAGLTGEETVIDVYSGIGTISL 323

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+   +V  VEI K +V+ A+ N   N+ +N + V   ++E  Q  + +         
Sbjct: 324 AMAKAAKKVYGVEIVKEAVQDAKINAFQNNASNTEFVVGKAEEQMQKWQED--------- 374

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                +   + VDPPR GLD + +          ++Y+SCNP +L RD+       + + 
Sbjct: 375 ---GLKPDVVVVDPPRKGLDQSVIDATVGMKPKRVVYVSCNPATLVRDIDRFGEQGYVVN 431

Query: 343 R-LALFDQFPYTRHMECGVLLVR 364
           + +   DQFP T H+E   +L R
Sbjct: 432 QPIVPVDQFPQTPHVESVTVLER 454


>gi|301299733|ref|ZP_07205983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852664|gb|EFK80298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 459

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 154/379 (40%), Gaps = 40/379 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
            Y  QL  K   +  ++    + NL++        P +YR +A+  +      L    F 
Sbjct: 92  SYSAQLKFKRKLVTDLLQKVHLDNLEVADTLGMDTPYYYRNKAQVPVREVNGKLEIGFFK 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113
           + + + + +++F+     I+ +++++   +R+  +           +R  L +  Y + +
Sbjct: 152 RNSHDFVAMEHFLIQDKRIDEILLKVRDILRMSKITAYNEEKHTGMVRHILVRRGYYSHE 211

Query: 114 SDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
           +   +V+ +      D      ++    ++  +         +    KT     +D + +
Sbjct: 212 AMVVLVSRVRKIPNLDQIAFLIQQQCPDVKSVMLNVNPDKTNVILGKKTIKLAGKDTIQD 271

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228
            L      L +     SF Q N      + +  +  A    +  +++ YCG G  SL +A
Sbjct: 272 TL----NGLKFDISAQSFYQVNPQQTEKLYQLAIENAELTGKETVIDAYCGIGTISLNMA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  VEI   ++E A++N + N ++N+      ++ + +  ++             
Sbjct: 328 KFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFEVGEAEVWMEKWQK------------Q 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIER-L 344
             +   I VDPPR GL  + +          I+Y+SCNP +L RD+   +   + + + +
Sbjct: 376 GIKPDVIMVDPPRKGLTSSLIQSAVTMEPKKIVYVSCNPATLVRDIQEFMELGYQVTKPI 435

Query: 345 ALFDQFPYTRHMECGVLLV 363
              DQFP T H+E   +L 
Sbjct: 436 QPVDQFPQTTHVESVTVLE 454


>gi|223932599|ref|ZP_03624599.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591]
 gi|302023441|ref|ZP_07248652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus suis
           05HAS68]
 gi|223898709|gb|EEF65070.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591]
          Length = 450

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D L+Q +  F+    +       I   +P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLDFKQDLLQQALKKFKPAGYENYTIYPTIGMDKPSHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS----LLIN---ALMIEMMATIRLEPL---LRAKL 104
            D +   ++ + +   + I            +IN    L+ +    I  E     +R  +
Sbjct: 141 KDQVKAGLYAENSHRLIGITNCYVQDAETQEIINGIAKLLTKHRIPIYNERKQHGIRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q     +T       +L+D+   +    +  AL+  + +   I    KT+I 
Sbjct: 201 VRKARKTGQVQVIFITSCQVNLIKLIDELTSQFPSIITIALNWNRQKTSDI-YGEKTEIL 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
                +DE +        +     +F Q N      +  E V A       DL++ YCG 
Sbjct: 260 WGEQAIDEAVL----DYEFSLSPRAFYQLNPQQTEILYGEAVKALDISGDEDLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    V  ++I   ++E A+ N     ++N       ++E      +E    
Sbjct: 316 GTIGFAFAKKVKSVRGMDIIPEAIEDAKANAKRMGLSNTHYEAGKAEEIIPKWYQE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L RDL  LS  
Sbjct: 372 --------GYRADALVVDPPRTGLDEKLLKTILDYKPAKMVYVSCNVSTLARDLVELSKA 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP+T   E  V L +K
Sbjct: 424 YKVEYIQSVDMFPHTARTEAVVKLSKK 450


>gi|116334207|ref|YP_795734.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           brevis ATCC 367]
 gi|116099554|gb|ABJ64703.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           brevis ATCC 367]
          Length = 457

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 151/381 (39%), Gaps = 45/381 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y  QL  K  ++ ++             +    P  YR +A+  +      L    + Q 
Sbjct: 93  YPAQLKFKQHQIAELFSKSHQDVEVAPTMGMDNPTQYRNKAQVPVRMIKGQLETGFYRQH 152

Query: 67  TKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDYLTSQSD 115
           + E + +  F      I+A +I++              +  + ++R  + +  Y    S 
Sbjct: 153 SHELIPLTDFYIQDPAIDAAIIKVRDLLRQFEIPAYNEVSDKGVIRNIMVRRGYY---SH 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRANKTKICLDRDYVD 168
           + ++ LI       +  +   ++  AL      +         +   N T++   +  ++
Sbjct: 210 EMMIVLISRTQKIPSQAQLVDQIHQALPEVTSIVLNVNAKKTNVIMGNVTRVLYGKPTIE 269

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVL 227
           + L      L +     SF Q N      + +  +  A       +++ YCG G  SL L
Sbjct: 270 DTLM----GLTFAISARSFYQVNPQQTEKLYQMAIDKAGLTGAETVIDAYCGIGTISLAL 325

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+H  +V  VEI   ++E A+ N   NH++NV      +++            ++ +   
Sbjct: 326 AKHAKQVYGVEIVPEAIEDAKVNAQKNHLSNVTFAVNKAED------------QMAEWQA 373

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIER- 343
              +   I VDPPR GL ++ +      A   ++Y+SCNP +L RD++  +   + ++  
Sbjct: 374 AGIKPDVIVVDPPRKGLAESLIDSAAKMAPKKVVYVSCNPATLVRDVARFTELGYHVDGP 433

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           +   DQFP T H+E   +L R
Sbjct: 434 VQPVDQFPQTPHVESVTVLKR 454


>gi|160943841|ref|ZP_02091072.1| hypothetical protein FAEPRAM212_01340 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445015|gb|EDP22018.1| hypothetical protein FAEPRAM212_01340 [Faecalibacterium prausnitzii
           M21/2]
          Length = 394

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 148/398 (37%), Gaps = 46/398 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60
              LL   Y +QL +K +++R ++  +   +      +P HYR +         G  L  
Sbjct: 12  GCPLLGLDYAEQLKQKEEKVRALVGKYGPVHPIRGMEQPYHYRNKVISTFATGWGGKLTS 71

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
            ++   + + + ++  +    +++  M  + A                 LLR  L +   
Sbjct: 72  GIYAANSHKVLPVESCLLQDEVLDKTMQAVRAAANACRYQSYDEDKGTGLLRHCLLRRGV 131

Query: 110 LTSQSDQAIVTL--------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            T Q    +VT          + + L     +  + +   +     +   +      K+ 
Sbjct: 132 ATGQVMVVLVTAQPVLPGAKNFVKALLTEAAQRGVTVTTVVQNVNSRKTSVVLGEAEKVL 191

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             + ++ + L        Y     SF Q N      +    + A K    ++ L+ YCG 
Sbjct: 192 YGKGFILDTLCGK----TYAISPRSFYQVNPAQTAVLYGLAVEAAKLTGKEVVLDAYCGI 247

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L  A H  +V+ VE+ + +V+ A  N   N V N +     +              
Sbjct: 248 GTIGLTAADHAKQVVGVELNRDAVQDAIGNARHNGVKNARFFAADAT------------R 295

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337
            +++      +   IF+DPPR G     +  V   A   ++Y+SCNP +L RDL+ L+  
Sbjct: 296 WIREAAAAGEKADVIFMDPPREGSTPEFLASVARMAPKRVVYVSCNPVTLARDLATLTKL 355

Query: 338 THTIERLALFDQFPYTRHMECGVLLV------RKPSGW 369
            +  E     D FP+T H+E    L       +KPSG 
Sbjct: 356 GYKAEGFTPVDMFPHTEHIETVCALSKLEIHRKKPSGK 393


>gi|295092515|emb|CBK78622.1| 23S rRNA m(5)U-1939 methyltransferase [Clostridium cf.
           saccharolyticum K10]
          Length = 475

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 142/411 (34%), Gaps = 66/411 (16%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP---------------------------NL 33
            G  +    YE+QL  K  ++   +                                   
Sbjct: 78  GGCQMQAVAYEEQLRFKERKVYNNLKRIGGLSGLLLPEEKGQENLEGTEKKRGETVRMEP 137

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLY-HIMFDQQTKERMRIDYFMPGSLL---------- 82
            I   EP  YR +A+F    D D       +  +T   +  +  + G             
Sbjct: 138 IIGMEEPWRYRNKAQFPFGRDKDGRIIAGFYAGRTHCIVENEDCLLGVEENREILDIIRN 197

Query: 83  -INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
            +N   IE         L+R  L +  + T +    ++         +   E  +++   
Sbjct: 198 FMNEYKIEPYNEELHRGLVRHVLIRKGFRTGELMVCLILNGTELPKKEILVERLLKIAGM 257

Query: 142 LHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                  I       KT + L ++    Y    +T     + YR    SF Q N      
Sbjct: 258 -----TSISFNINREKTNVILGKEIVNLYGPGYITDYIGNVKYRISPLSFYQVNPVQTER 312

Query: 198 MLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           +    L    G+ GD  + +LYCG G  SL LA+   +V  VEI   +++ AR N   N 
Sbjct: 313 LYGTALE-YAGLTGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIDDARGNAEING 371

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--Q 313
           + NV+     ++E       + +                I VDPPR G D+  +  +   
Sbjct: 372 MENVEFFVGKAEEVLPEQYEKNQ-----------VYADVIVVDPPRKGCDEKCLETIVRM 420

Query: 314 AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
               ++Y+SC+  +L RD+  L    + ++R+   D FP + H+E   LL 
Sbjct: 421 GPKKVVYVSCDSATLARDVKYLGEKGYEVKRVRCVDMFPQSGHVETAALLT 471


>gi|308180110|ref|YP_003924238.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|308045601|gb|ADN98144.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 457

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 155/390 (39%), Gaps = 50/390 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +Y +QL  K  ++ ++     + +++    I  + P  YR +A+  +      L  
Sbjct: 88  LQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPTIGMANPTQYRNKAQVPVRQVQGQLTT 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDY 109
             + + + + M I+ +      I+  ++ +                    +R  + +  Y
Sbjct: 148 GFYKKNSHQLMPIEDYYIQDPAIDKAIVVVRDILRKYHEAAYDEFHHSGTIRTIMVRRGY 207

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD------ 163
            + +    IVT   H  + D        ++ AL      IQ +  + KT + L       
Sbjct: 208 YSHEMMVVIVTRTKHLPMADV---VTQEIQAALPEVVSVIQNVN-SKKTNVILGPVNNVL 263

Query: 164 --RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
             +  +D++L      L +     SF Q N      + +  +    G+ G+  +++ Y G
Sbjct: 264 AGKATIDDQLL----GLTFAISAQSFYQVNPQQTEKLYQLAID-QAGLTGNETVIDAYSG 318

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL +A+H  +V  VEI   +++ AR N   N + N   V  S+++     + +   
Sbjct: 319 IGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKAMAKWQAD--- 375

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
                      +   I VDPPR GLD   +      A   ++YISCNP +L RD    + 
Sbjct: 376 ---------GVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDAQRFAE 426

Query: 338 -THTIER-LALFDQFPYTRHMECGVLLVRK 365
             + I   +   DQFP T H+E   +L R+
Sbjct: 427 YGYHISAPVQPVDQFPQTPHIESVTVLERE 456


>gi|313889955|ref|ZP_07823593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121671|gb|EFR44772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 451

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 144/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  FQ    +       I   EP  YR + +F     
Sbjct: 82  GCQIMHLAYPKQLDFKDDLIRQSLKKFQPQGFENFPIKHTIGMVEPWRYRAKLQFQTRSF 141

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
           G  ++  +F + +   + I+  +        ++  +++ +    +          LR  +
Sbjct: 142 GGKVHAGLFAEGSHHLISIENCLVQDSTTQTIINGIVSLLEGHKIPIYNERRIAGLRTVM 201

Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    + Q     VT   ++   L          ++                 +T+I  
Sbjct: 202 IRKGQSSGQVQVIFVTSKELHLAPLVKELVTNFEEIKTVAVNYNRSKTSSLYGEQTEIIW 261

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            +D +DE +        +     +F Q N      +  E V A     +  +++ YCG G
Sbjct: 262 GKDTIDEDVL----DYSFALSPRAFYQLNPQQTETLYSEVVKALEVSEEDQIIDAYCGVG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A+H   +  ++I   ++  A+ N  A    N       +++      +E     
Sbjct: 318 TIGFAFAKHVKGIRGMDIIPEAIADAKKNAKAMGFTNTYYETGKAEDLIPKWYQE----- 372

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLD+  +  +  +    ++Y+SCN  +L RDL  L+  +
Sbjct: 373 -------GYRADAIIVDPPRTGLDEKLLETIIKFQPAKMVYVSCNTSTLARDLVTLAKVY 425

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            IE +   D FP+T   E  V L +K
Sbjct: 426 QIEYIQSVDMFPHTARTEAVVKLRKK 451


>gi|225377937|ref|ZP_03755158.1| hypothetical protein ROSEINA2194_03597 [Roseburia inulinivorans DSM
           16841]
 gi|225210188|gb|EEG92542.1| hypothetical protein ROSEINA2194_03597 [Roseburia inulinivorans DSM
           16841]
          Length = 454

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/406 (20%), Positives = 148/406 (36%), Gaps = 62/406 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAE--FHIWHDG---- 55
                   YEQQL EK   +R+ +  +      I    P HYR +    F +   G    
Sbjct: 52  GCDYQGMSYEQQLQEKQTYVRKNIGDYCKVLPIIGMENPYHYRNKVHAVFDVERRGKHAN 111

Query: 56  ---------------DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIE 89
                            +   ++   T E + ID       L           +++  I+
Sbjct: 112 GGRRTAGNGHAKAAPGGVISGVYKAGTHEVINIDSCEIEDELSSTIIRDIRGLLHSFKIK 171

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
                    LLR  L +  +    S + +V L+    +  +       LR         +
Sbjct: 172 TYDEDTGYGLLRHVLVRRGF---HSGEVMVVLVLGSPILPSKNNFVKALRKLHPEITTVV 228

Query: 150 QLIGR-------ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
             I           K  +   + Y+++ L        +R    SF Q N      +    
Sbjct: 229 VNINDKQTSMVLGEKETVIYGKGYIEDTLC----GCTFRISPKSFYQVNPVQTEILYNKA 284

Query: 203 LA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +  A    +  +++ YCG G   L+ A     V+ VE+ + +V+ A  N   N++ N + 
Sbjct: 285 ITYAGLTGKEKVIDAYCGTGTIGLIAASKAKEVIGVELNRDAVKDAVINAKRNNIKNEQF 344

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319
               + +F   +               + +   +F+DPPR+G D+A +  V   A   ++
Sbjct: 345 YNADAGKFMVELAE------------QNKKVDVVFMDPPRAGSDEAFLSSVVKLAPKKVV 392

Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           Y+SCNP++L RDL  L+   +        D FP+T+H+EC  LL +
Sbjct: 393 YVSCNPETLARDLKYLTRHGYQAVECQPCDMFPFTKHVECVCLLSK 438


>gi|28377929|ref|NP_784821.1| RNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|50401551|sp|Q88XP4|Y1151_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_1151
 gi|28270763|emb|CAD63668.1| RNA methyltransferase [Lactobacillus plantarum WCFS1]
          Length = 457

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 156/390 (40%), Gaps = 50/390 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +Y +QL  K  ++ ++     + +++    I  + P  YR +A+  +      L  
Sbjct: 88  LQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPTIGMANPTQYRNKAQVPVRQVQGQLTT 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDY 109
             + + + + M I+ +      I+  ++ +                    +R  + +  Y
Sbjct: 148 GFYKKNSHQLMPIEDYYIQDPAIDKAIVVVRDILRKYHEAAYDEFHHSGTIRTIMVRRGY 207

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD------ 163
            + +    IVT   H  + D        ++ AL      IQ +  + KT + L       
Sbjct: 208 YSHEMMVVIVTRTKHLPMADV---VTQEIQAALPEVVSVIQNVN-SKKTNVILGPVNNVL 263

Query: 164 --RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
             +  +D++L      L +     SF Q N      + +  +    G+ G+  +++ Y G
Sbjct: 264 AGKATIDDQLL----GLTFAISAQSFYQVNPQQTEKLYQLAID-QAGLTGNETVIDAYSG 318

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL +A+H  +V  VEI   +++ AR N   N + N   V  S+++     + +   
Sbjct: 319 IGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKAMAKWQAD--- 375

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
                      +   I VDPPR GLD   +      A   ++YISCNP +L RD+   + 
Sbjct: 376 ---------GVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDVQRFAE 426

Query: 338 -THTIER-LALFDQFPYTRHMECGVLLVRK 365
             + I   +   DQFP T H+E   +L R+
Sbjct: 427 YGYHISAPVQPVDQFPQTPHIESVTVLERE 456


>gi|254556113|ref|YP_003062530.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|254045040|gb|ACT61833.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
          Length = 457

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 155/390 (39%), Gaps = 50/390 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +Y +QL  K  ++ ++     + +++    I  + P  YR +A+  +      L  
Sbjct: 88  LQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPTIGMANPTQYRNKAQVPVRQVQGQLTT 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDY 109
             + + + + M I+ +      I+  ++ +                    +R  + +  Y
Sbjct: 148 GFYKKNSHQLMPIEDYYIQDPAIDKAIVVVRDILRKYHEAAYDEFHHSGTIRTIMVRRGY 207

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD------ 163
            + +    IVT   H  + D        ++ AL      IQ +  + KT + L       
Sbjct: 208 YSHEMMVVIVTRTKHLPMADV---VTQEIQAALPEVVSVIQNVN-SKKTNVILGPVNNVL 263

Query: 164 --RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
             +  +D++L      L +     SF Q N      + +  +    G+ G+  +++ Y G
Sbjct: 264 AGKATIDDQLL----GLTFAISAQSFYQVNPQQTEKLYQLAID-QAGLTGNETVIDAYSG 318

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL +A+H  +V  VEI   +++ AR N   N + N   V  S+++     + +   
Sbjct: 319 IGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKAMAKWQSD--- 375

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
                      +   I VDPPR GLD   +      A   ++YISCNP +L RD    + 
Sbjct: 376 ---------GVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDAQRFAE 426

Query: 338 -THTIER-LALFDQFPYTRHMECGVLLVRK 365
             + I   +   DQFP T H+E   +L R+
Sbjct: 427 YGYHISAPVQPVDQFPQTPHIESVTVLERE 456


>gi|313890778|ref|ZP_07824403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120879|gb|EFR43993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 453

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 141/382 (36%), Gaps = 40/382 (10%)

Query: 10  YEQQLAEKVDRLRQMM---LAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE+QL  K  +++  +      +       I   +P  YR +A+  +      L    F 
Sbjct: 88  YEEQLLFKAKQVKDNLYKTAGIKAVELLPTIGMEQPYAYRNKAQIPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  F      I+ L            +          L++  + +  + + Q
Sbjct: 148 KNSHDLLPISDFYIQDKEIDKLILFVRNLLRRFQVSPYNEADQSGLIKNLVVRRGHYSGQ 207

Query: 114 SDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
                VT        +       E   ++   +     Q      +   K+   +DY+ +
Sbjct: 208 MMLVFVTSRPKVFRVEQMVQLITEAFPQVVSIMQNVNDQNSNAIFSKDFKVLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +        Y     SF Q N  +   + +  +  +     D+ ++ Y G G   L  A
Sbjct: 268 SILGND----YMISAQSFYQVNTVMAEKLYQTAIDFSDLSADDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  VE+ + +V+ AR N   N + N + +  S++   +   +E            
Sbjct: 324 KKVKKVYGVEVIEAAVKDARKNAERNGIRNAEFLVGSAEAAMEKWSKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +      A   I Y+SCNP ++ RD+       + + +  
Sbjct: 372 GIKPSVILVDPPRKGLTESFIKASAAMAPKKITYVSCNPATMARDIKHYQELGYNLIKAQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKPS 367
             D FP+T H+EC  L+ R  S
Sbjct: 432 PVDLFPHTHHVECIALIQRVKS 453


>gi|322412063|gb|EFY02971.1| Putative RNA methyltransferase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 452

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 144/380 (37%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +           N  I    P+ YR +A+  +      L    F 
Sbjct: 88  YEDQLRFKQKQVQDNLYKIAGINDVTVNQTIGMDNPLAYRNKAQVPVRGVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            ++         L+R  + +  + +  
Sbjct: 148 KHSHDLVPISDYYIQDKEIDRLINFTRELLHRFDVKPYDEKEQTGLIRHIVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ +        IQ I   N T     +D    Y  +
Sbjct: 207 --EMMLVLVTTRPKVFRVDQVISKIVETFPEVVSIIQNINDKN-TNAIFGKDFKRLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +A +     D +++ Y G G   L  A
Sbjct: 264 TITDSMLGNDYAISAQSFYQVNTVMAEKLYQTAIAFSDLSDDDIVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V+ A+ N A N + NV  V  +++       +E            
Sbjct: 324 KTVKAVYGVEVIETAVKDAQQNAARNGITNVHFVADTAENAMATWAKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 372 GIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC  LL ++
Sbjct: 432 PVDLFPQTHHVECVSLLEKR 451


>gi|283796600|ref|ZP_06345753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
 gi|291076020|gb|EFE13384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
          Length = 475

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 142/411 (34%), Gaps = 66/411 (16%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP---------------------------NL 33
            G  +    YE+QL  K  ++   +                                   
Sbjct: 78  GGCQMQAVAYEEQLRFKERKVYNNLKRIGGLSGLLLPEEKGQENLKGTEKKREETVRMEP 137

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLY-HIMFDQQTKERMRIDYFMPGSLL---------- 82
            I   EP  YR +A+F    D D       +  +T   +  +  + G             
Sbjct: 138 IIGMEEPWRYRNKAQFPFGRDKDGRIIAGFYAGRTHCIVENEDCLLGVEENREILDIIRN 197

Query: 83  -INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
            +N   IE         L+R  L +  + T +    ++         +   E  +++   
Sbjct: 198 FMNEYKIEPYNEELHRGLVRHVLIRKGFRTGELMVCLILNGTELPKKEILVERLLKIAGM 257

Query: 142 LHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                  I       KT + L ++    Y    +T     + YR    SF Q N      
Sbjct: 258 -----TSISFNINREKTNVILGKEIVNLYGPGYITDYIGNVKYRISPLSFYQVNPVQTER 312

Query: 198 MLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           +    L    G+ GD  + +LYCG G  SL LA+   +V  VEI   +++ AR N   N 
Sbjct: 313 LYGTALE-YAGLTGDETVWDLYCGIGTISLFLAQKAKQVYGVEIVPQAIDDARGNAEING 371

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--Q 313
           + NV+     ++E       + +                I VDPPR G D+  +  +   
Sbjct: 372 MENVEFFVGKAEEVLPEQYEKNQ-----------VYADVIVVDPPRKGCDEKCLETIVRM 420

Query: 314 AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
               ++Y+SC+  +L RD+  L    + ++R+   D FP + H+E   LL 
Sbjct: 421 GPKKVVYVSCDSATLARDVKYLGEKGYEVKRVRCVDMFPQSGHVETAALLT 471


>gi|116494563|ref|YP_806297.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           casei ATCC 334]
 gi|116104713|gb|ABJ69855.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           casei ATCC 334]
          Length = 454

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/381 (22%), Positives = 160/381 (41%), Gaps = 38/381 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L I  Y  QL  K  +++++     +       I  + P+ YR +A+  +     +L   
Sbjct: 87  LSILAYPAQLQFKQKQIQELYKKAHLDIAVLPTIGMTNPLGYRNKAQVPVRTVNGELQTG 146

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + + + I+ F+     I+  ++ +   +R            + ++R  + +  + 
Sbjct: 147 FYKKHSHDLVPIEDFLIQDPKIDQTIVVVRDLLRKYHVPAYDERANKGVIRNIMVRRGHY 206

Query: 111 TSQSDQAIVTLIYHRL-LDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDY 166
           T Q    +V+  +    L D   E  + L +          +   +    K++     DY
Sbjct: 207 TKQMMIVLVSQTWQVPHLKDIVEEITLALPEVTSVVVNLNDKRTNVILGRKSRTIYGEDY 266

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225
           + ++L  +     ++    SF Q N      + +  + AA    + ++++ Y G G  SL
Sbjct: 267 LLDKLLGSE----FQISPVSFYQVNPIQTEVLYKKAIEAAGLTGKENVIDAYSGIGTISL 322

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +ARH   V  VE+ +P+V  AR N   NH++NV      ++E  Q  +     N L   
Sbjct: 323 TMARHAKHVYGVEVVEPAVRDARANAVRNHIDNVTFEVGKAEEVIQRWKD----NELP-- 376

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                    + VDPPR GLD + +  V     P I+Y+SCN  +L RDL +L+   +T +
Sbjct: 377 ------VDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNSATLARDLQLLAAFGYTAK 430

Query: 343 RLALFDQFPYTRHMECGVLLV 363
                D FP T+H+E    L 
Sbjct: 431 ETQPVDMFPQTQHIESITALT 451


>gi|332686169|ref|YP_004455943.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC
           35311]
 gi|332370178|dbj|BAK21134.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC
           35311]
          Length = 460

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 140/384 (36%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++ +M              I  + P  YR +A+       + L 
Sbjct: 87  LQHMSYGEQLLFKQKQVKNVMKKIAKLPDTPVLPTIGMAVPKGYRNKAQIPARKVDNQLE 146

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108
              F + + E + I  F      I+  ++ +   +R               LR  + +  
Sbjct: 147 TGFFRKNSHELIPIQDFYIQDPKIDQAILVIRDILRRFQVKPYNEQEHTGNLRQIIIRRG 206

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    L  H  L     +        +         +    ++ +    
Sbjct: 207 HYSHEMMVILVTRTKKLFNHEQLVKEIMQKLPETISIIQNINPDKTNVIMGEESILLYGN 266

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223
            Y++++L        Y     SF Q N     ++ +  +  A       +++ YCG G  
Sbjct: 267 PYINDQLLGKN----YHISAASFYQVNTEQTEYLYKTAIEFAGLSPTDQVVDAYCGIGTI 322

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L LA     V  VEI + ++  AR N A N + N       ++E             + 
Sbjct: 323 ALSLAEQVKHVYGVEIIEAAILDARENAAINQIENCTFNIGKAEEV------------MI 370

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THT 340
           D          IFVDPPR GL ++ +          I+YISCNP +L RDL + +   + 
Sbjct: 371 DWQKAGISPNIIFVDPPRKGLTESFIETCTEMDPNRIIYISCNPATLARDLKLFAELGYE 430

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
             ++   D FP T H+E   LL +
Sbjct: 431 TRKIQPVDLFPQTYHVETVALLQK 454


>gi|317495762|ref|ZP_07954125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum
           M424]
 gi|316913939|gb|EFV35422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum
           M424]
          Length = 537

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/392 (19%), Positives = 154/392 (39%), Gaps = 39/392 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L+   YE+QL  K  +++ +M      +       +      HYR ++   +    +
Sbjct: 75  GANLVHMDYEEQLRFKTKKVQNIMKKTLGADSVKVLPTLGMKNGYHYRNKSVIPVQKVDN 134

Query: 57  DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLF 105
           ++    +  ++ + + I+                  LI  L + +   +  +  +R  +F
Sbjct: 135 EVRMGYYKPRSHDVINIEKCFIQYDEHNKLMNDIRSLIIELDLSVYDEVSHKGAIRHIMF 194

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKICL 162
           + +   S+    I+       LD+   +      R+   +     +   +   +KT+   
Sbjct: 195 RTNSSKSEIMVGIIAKERFANLDEFVEKITSLDDRIVSVMLNINDKKTNVIFGDKTENLF 254

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            RDY+ + L      + ++    SF Q N      +    L  A   +   +++ YCG G
Sbjct: 255 GRDYIVDVL----NNIEFKISLCSFYQVNPIQTEVLYSKALELAELKVDDTIIDAYCGIG 310

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL  A+   +V  +EI + +V  A  N   N++ N + +   S++             
Sbjct: 311 TISLFAAQKVKKVYGIEIVEAAVLDALENAKNNNITNAEFLLGKSEDI------------ 358

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-T 338
           +K + + + +   + VDPPR G  +  +  + A     ++Y+SCNP +L RD+ I+    
Sbjct: 359 IKKLILQNIKLDAVIVDPPRKGCGENFLRDLAAMDIEKVVYVSCNPATLARDMGIMRRLG 418

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           + +  +   D FP T H+E   LL +     H
Sbjct: 419 YKLGAVQPVDMFPGTYHVETVALLSKLDVDKH 450


>gi|188590211|ref|YP_001922461.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188500492|gb|ACD53628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 455

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/392 (19%), Positives = 160/392 (40%), Gaps = 44/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFR-SEPIHYRMRAEFHIWHDG 55
             ++    Y++QL  K +R++  +         +    +   S P  YR + +  I    
Sbjct: 80  GCSIQHMNYKKQLDFKWERVKDCIEKIGGLSKDLVKYPLGMESNPYRYRNKVQLPIGKIN 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEP-----------LLR 101
           +++    +  ++ + + +DY +    +   +  +  + +    +EP           +L+
Sbjct: 140 NEVVIGFYAPRSHDIIDLDYCLIQDKIADDVANITKQWIKKNNIEPATLDGQFNPNGILK 199

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             + +  +   ++D+ +V L+          E    + +++   K  +  I   N T + 
Sbjct: 200 HLMIRRGF---KTDEVMVVLVATTSNIPHLDEFKNIILESIKGIKSIVLNINPKN-TNVI 255

Query: 162 LDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
           L  +    Y ++ +        +     SF Q N      +    L   +  + + + + 
Sbjct: 256 LGEECITLYGEDTIKDYIGEFKFNISPLSFFQVNPIQTEILYNKALEYAELTENETVFDA 315

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  +L L++   +V  VEI +P++  A+ N   N+V+NV+     S+E    +  +
Sbjct: 316 YCGTGTITLFLSQKAKKVYGVEIIEPAIINAKENAKLNNVDNVEFFVGKSEEVIPTLIND 375

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
                         +   + VDPPR G D   +  ++      ++Y+SC+P +L RDL I
Sbjct: 376 ------------GIKADIVVVDPPRKGCDIKLLEAIEKVKPKKVVYVSCDPSTLSRDLKI 423

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L    + +  +   D FP T H+E  V L++K
Sbjct: 424 LDEKGYKVVEIQPVDMFPQTSHIENVVKLIKK 455


>gi|206901370|ref|YP_002250424.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus
           thermophilum H-6-12]
 gi|206740473|gb|ACI19531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dictyoglomus
           thermophilum H-6-12]
          Length = 448

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 136/384 (35%), Gaps = 37/384 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWHDGDD 57
              L+   YE QL  K   +              N  I    P  YR +A+  +      
Sbjct: 80  GCHLMHVNYEYQLELKKMMVEDAFKRIGKIEKEVNPVIGMENPYRYRNKAKIPVGKRRGK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +    +   T   + I+  +                I    IE+   ++   LLR  + +
Sbjct: 140 IVLGFYKPNTHYIVDINKCIVHHEDTDKVIETTKEAIKKFHIEVYNELQHTGLLRFVVVR 199

Query: 107 IDYLTSQSDQAIV---TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             +        +V    +   + +   ++     L+        +        ++++ L 
Sbjct: 200 RSFAFDDLMVILVSKGMIDNAKKVARFYKYKLKNLKSFYVNINPKRTNEIFGEESRLILG 259

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
               DE +       ++     SF Q N+     +    L         + + YCG G  
Sbjct: 260 ----DETIRDKIGDFVFEISPVSFFQINSIQTEKLYNKALEYLSPNSRLVFDAYCGIGTI 315

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL L++  ++V  +E+ + ++E A  N   N V NV+ +   S+E    +  +       
Sbjct: 316 SLFLSKKAEKVYGIEVERTAIEDAWKNARLNKVKNVEFIWGRSEEVIPRLIED------- 368

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHT 340
                      + +DPPR G D   +  +       I+YISC P +L RD++ +L+  + 
Sbjct: 369 -----GKIPDAVVLDPPRKGCDQNLLESIIRAKIRQIIYISCYPSTLARDINILLNAGYN 423

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +  +   D FP T H+E   LL +
Sbjct: 424 LVDVQPVDMFPQTFHVETIALLEK 447


>gi|300766632|ref|ZP_07076549.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300495732|gb|EFK30883.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 457

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 155/390 (39%), Gaps = 50/390 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +Y +QL  K  ++ ++     + +++    I    P  YR +A+  +      L  
Sbjct: 88  LQHLEYSEQLKFKQHQVAELFAKVHMDDVEVLPTIGMVNPTQYRNKAQVPVRQVQGQLTT 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDY 109
             + + + + M I+ +      I+  ++ +                    +R  + +  Y
Sbjct: 148 GFYKKNSHQLMPIEDYYIQDPAIDKAIVVVRDILRKYHEAAYDEFHHSGTIRTIMVRRGY 207

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD------ 163
            + +    IVT   H  + D        ++ AL      IQ +  + KT + L       
Sbjct: 208 YSHEMMVVIVTRTKHLPMADV---VTQEIQAALPEVVSVIQNVN-SKKTNVILGPVNNVL 263

Query: 164 --RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
             +  +D++L      L +     SF Q N      + +  +    G+ G+  +++ Y G
Sbjct: 264 AGKATIDDQLL----GLTFAISAQSFYQVNPQQTEKLYQLAID-QAGLTGNETVIDAYSG 318

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL +A+H  +V  VEI   +++ AR N   N + N   V  S+++     + +   
Sbjct: 319 IGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFVLDSAEKAMAKWQAD--- 375

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
                      +   I VDPPR GLD   +      A   ++YISCNP +L RD+   + 
Sbjct: 376 ---------GVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDVQRFAE 426

Query: 338 -THTIER-LALFDQFPYTRHMECGVLLVRK 365
             + I   +   DQFP T H+E   +L R+
Sbjct: 427 YGYHISAPVQPVDQFPQTPHIESVTVLERE 456


>gi|317056887|ref|YP_004105354.1| TrmA family RNA methyltransferase [Ruminococcus albus 7]
 gi|315449156|gb|ADU22720.1| RNA methyltransferase, TrmA family [Ruminococcus albus 7]
          Length = 417

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 151/384 (39%), Gaps = 36/384 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60
            G  L + Y +QL  K ++  +M+  F      +   EP +YR + +     D    +  
Sbjct: 23  GGCQLSESYSEQLTRKQEKAARMLSGFGRVEDIVPMEEPYNYRCKVQTVYATDSSKRIIS 82

Query: 61  IMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEP--------LLRAKLFQIDY 109
            ++   +K  + +D  M     +  I   + ++M  +R+ P        ++R  L +  +
Sbjct: 83  GVYQSNSKRMVAVDDCMLEAQQAAPIVCTIKKLMKDMRIRPYDMRTGVGIVRHTLIRTSF 142

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR----ANKTKICLDRD 165
            T Q    IVT        + + +  ++    +    + I   G       ++ +     
Sbjct: 143 STGQVMVVIVTASAMLPSKNNFVKALVKAHPEITTVVHNICPDGMPLTLGERSIVLYGDG 202

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS 224
           Y+++ L        +R    SF Q N      +  + + A    +G  +++ YCG G   
Sbjct: 203 YIEDELC----GCRFRISPASFYQVNPIQTEKLYSYAVEAAGITKGTKVIDAYCGTGTIG 258

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           ++ A +   V  VE  K +   A+ N   N ++N+      + +F QAM    E      
Sbjct: 259 IICAVNGADVTGVESNKHACRDAKVNAGLNGLDNISFYNEDAGKFMQAMASRGE------ 312

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDLSIL-STTHTI 341
                     + +DPPR+G     +   +  A   I+Y+SC  ++L RDL IL    +  
Sbjct: 313 ------SCDVLIMDPPRAGASSEFIGCALKLAPKRIVYVSCKIETLERDLRILTKGGYKA 366

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
             +   D FP+T  +E  V L RK
Sbjct: 367 VNIQPVDMFPHTMGIETVVCLERK 390


>gi|312864433|ref|ZP_07724665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei
           F0415]
 gi|311100035|gb|EFQ58247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei
           F0415]
          Length = 450

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 146/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQI----FRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D ++Q +  FQ     N +I        P HYR + +F   H 
Sbjct: 81  GCQIMHLTYKKQLDFKDDIIKQALKKFQPIGYENYEIRPTKGMDNPYHYRAKLQFQTRHF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPL-------LRAKL 104
            D +   +F   +   + ++  +    L   I     E++   ++          +R  +
Sbjct: 141 ADSVKAGLFASNSHRLVPLESCLVQDELTQEIVNKATELLDKYKIPIYNERKIAGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    +SQ     VT    RL  L    R    ++                  KT+I  
Sbjct: 201 VRKGQASSQVQIIFVTSKDIRLTALIKELRLAFPQIVTIAINYNSSKSSEIYGEKTQILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ ++E +        +     +F Q N      +  E V A       DL++ YCG G
Sbjct: 261 GKETIEEEVL----DYSFSLSPRAFYQLNPQQTQVLYQEAVAALDAQPDDDLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A     V  +++   S+E A+ N     ++N       +++      +E     
Sbjct: 317 TIGFAFANKVRSVRGMDVIPESIEDAKENAKTLGLSNTYYETGKAEDIIPKWYQE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR GLDD  +  +       ++Y+SCN  +L RDL  LS  +
Sbjct: 372 -------GYRASALVVDPPRVGLDDKLLKTIIDVRPAKMVYVSCNASTLARDLVALSQVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            ++ +   D FP+T  +E  V L +K
Sbjct: 425 QVDYIQSVDMFPHTARVEAVVKLRKK 450


>gi|294619066|ref|ZP_06698561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1679]
 gi|291594727|gb|EFF26109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1679]
          Length = 460

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 147/390 (37%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L Q +  F+            I   EP HYR +A+F +  +
Sbjct: 84  GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143

Query: 55  GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                +   +++  + + + I   +               L+N     +        + R
Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + +I   T +     +T        +A  RE   RL +    +   + Q   +   ++
Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++E++      + +     +F Q N      +  E + A        +++ 
Sbjct: 264 TIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETIVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A+    V  ++    ++  A+ N      +N +    ++++       E
Sbjct: 320 YCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVGTAEQVLPKWLNE 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                        ++   I VDPPR+GLD+A +  +  YP   ++YISCN  +L RDL  
Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYISCNVSTLARDLVN 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           LS    IE L   D FP T   E  V + R
Sbjct: 428 LSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457


>gi|293553261|ref|ZP_06673898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1039]
 gi|291602671|gb|EFF32886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1039]
          Length = 460

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 147/390 (37%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L Q +  F+            I   EP HYR +A+F +  +
Sbjct: 84  GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143

Query: 55  GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                +   +++  + + + I   +               L+N     +        + R
Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + +I   T +     +T        +A  RE   RL +    +   + Q   +   ++
Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++E++      + +     +F Q N      +  E + A        +++ 
Sbjct: 264 TIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETIVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A+    V  ++    ++  A+ N      +N +    ++++       E
Sbjct: 320 YCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVGTAEQVLPKWLNE 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                        ++   I VDPPR+GLD+A +  +  YP   ++YISCN  +L RDL  
Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYISCNVSTLARDLVD 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           LS    IE L   D FP T   E  V + R
Sbjct: 428 LSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457


>gi|291524312|emb|CBK89899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium rectale
           DSM 17629]
          Length = 418

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 151/375 (40%), Gaps = 34/375 (9%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQT 67
           +Y++QL  K   +++++  F      +    P++YR +            +    + + T
Sbjct: 59  EYKEQLKTKQAYMKKLLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRRGQIVAGAYRKNT 118

Query: 68  KERMRIDYFMP----GSLLINAL-------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            + + I+  M        +I  +        I+         LLR  L +  Y T    Q
Sbjct: 119 HDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYATG---Q 175

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTV 173
            +V L+    +  +       LR         +  +     + +  DR+   Y    +  
Sbjct: 176 IMVVLVLASPILPSKNNFVKALRKKHPNITTVVLNVNDKRTSMVLGDRNITLYGKGFIED 235

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFD 232
                 +R    SF Q N      + E  +  A    +  +++ YCG G   ++ A++  
Sbjct: 236 KLCGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERVIDAYCGTGTIGIIAAKNAG 295

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE+ + ++  A  N   N + N++     + +F   M +            +  + 
Sbjct: 296 EVIGVELNRDAIRDAVTNAKRNDIRNIRFYNDDAGKFMVEMAQ------------NGEKA 343

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             + +DPPR+G D+A +  V   A   ++Y+SC P++L RDL  L+   +T++R   +D 
Sbjct: 344 DVVIMDPPRTGSDEAFLSSVVKLAPERVVYVSCGPETLARDLKYLTKHGYTVKRATPYDC 403

Query: 350 FPYTRHMECGVLLVR 364
           FPYT H+E  VLL R
Sbjct: 404 FPYTEHIETVVLLCR 418


>gi|153811043|ref|ZP_01963711.1| hypothetical protein RUMOBE_01434 [Ruminococcus obeum ATCC 29174]
 gi|149832931|gb|EDM88014.1| hypothetical protein RUMOBE_01434 [Ruminococcus obeum ATCC 29174]
          Length = 430

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 144/387 (37%), Gaps = 42/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-YH 60
              LL   YE+QL +K  ++ +++  +      I    P HYR +      H  D     
Sbjct: 61  GCQLLDMPYEKQLKQKQKQVNKLLKPYCNTEKIIGMENPFHYRNKVHAVFGHRKDGTVIS 120

Query: 61  IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDY 109
            ++ Q T   + +D  +               L+ +  I+         L R  L +  +
Sbjct: 121 GIYQQGTHFIVPVDECLIEDKRADAIIRDIRDLLKSFKIKTYNEDTGYGLFRHVLVRTGH 180

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
               S Q +V  +    +  +       LR         I  +           K  +  
Sbjct: 181 ---HSGQVMVVFVVGSPILPSKNNFVKALRKLHPEITTIILNVNNQKTSMILGEKETVLY 237

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            + Y+++ L       I+R    SF Q N      +    +  A    +  +++ YCG G
Sbjct: 238 GKGYIEDELC----GHIFRISSKSFYQVNTAQTEKLYTKAIELAGLTGKERVIDAYCGIG 293

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L+ +     V++VE+   +V+ A  N   N + NV   +  +  F + M  E E   
Sbjct: 294 TIGLIASDKAKEVISVELNPDAVKDAIVNAKRNGIKNVHFYQNDAGVFMRQMADEGE--- 350

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338
                        +F+DPPRSG D+  +  V       ++Y+SC+P +L RDL  L+   
Sbjct: 351 ---------SADVVFMDPPRSGSDEKFLSSVVTLNPKRVVYVSCDPTTLARDLKYLTKHG 401

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           ++       D FP T H+E   LL RK
Sbjct: 402 YSAVTAVPVDMFPATEHVETVCLLSRK 428


>gi|69248258|ref|ZP_00604692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
 gi|257880209|ref|ZP_05659862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,230,933]
 gi|257883010|ref|ZP_05662663.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,502]
 gi|257891407|ref|ZP_05671060.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,410]
 gi|257893596|ref|ZP_05673249.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,408]
 gi|258614397|ref|ZP_05712167.1| RNA methyltransferase [Enterococcus faecium DO]
 gi|260560493|ref|ZP_05832667.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
 gi|289565178|ref|ZP_06445630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           D344SRF]
 gi|293563312|ref|ZP_06677762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1162]
 gi|293569307|ref|ZP_06680605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1071]
 gi|294614976|ref|ZP_06694865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1636]
 gi|294621465|ref|ZP_06700634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           U0317]
 gi|314939803|ref|ZP_07847023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a04]
 gi|314943901|ref|ZP_07850627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133C]
 gi|314949998|ref|ZP_07853291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0082]
 gi|314953520|ref|ZP_07856432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133A]
 gi|314994278|ref|ZP_07859580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133B]
 gi|314995146|ref|ZP_07860262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a01]
 gi|68194473|gb|EAN08972.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
 gi|257814437|gb|EEV43195.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,230,933]
 gi|257818668|gb|EEV45996.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,502]
 gi|257827767|gb|EEV54393.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,410]
 gi|257829975|gb|EEV56582.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,408]
 gi|260073495|gb|EEW61823.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
 gi|289162999|gb|EFD10847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           D344SRF]
 gi|291588013|gb|EFF19863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1071]
 gi|291592107|gb|EFF23727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1636]
 gi|291598959|gb|EFF30007.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           U0317]
 gi|291604764|gb|EFF34248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E1162]
 gi|313590637|gb|EFR69482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a01]
 gi|313591313|gb|EFR70158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133B]
 gi|313594443|gb|EFR73288.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133A]
 gi|313597442|gb|EFR76287.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133C]
 gi|313640943|gb|EFS05523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0133a04]
 gi|313643645|gb|EFS08225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           TX0082]
          Length = 460

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 147/390 (37%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L Q +  F+            I   EP HYR +A+F +  +
Sbjct: 84  GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143

Query: 55  GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                +   +++  + + + I   +               L+N     +        + R
Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + +I   T +     +T        +A  RE   RL +    +   + Q   +   ++
Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++E++      + +     +F Q N      +  E + A        +++ 
Sbjct: 264 TIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETIVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A+    V  ++    ++  A+ N      +N +    ++++       E
Sbjct: 320 YCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVGTAEQVLPKWLNE 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                        ++   I VDPPR+GLD+A +  +  YP   ++YISCN  +L RDL  
Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYISCNVSTLARDLVN 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           LS    IE L   D FP T   E  V + R
Sbjct: 428 LSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457


>gi|324991589|gb|EGC23522.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK353]
          Length = 469

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 155/384 (40%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +      +       +   +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYPAQLDFKRKQVKDSLYKIAGVSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 216 HYSGEIMIILVTTRPKIFRVEQLMEHLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  L  ++    D+ ++ Y G G  
Sbjct: 276 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTALDFSELTADDVVIDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A++  +V  VE+   +VE +R N   N + N   V   ++E  Q   +E       
Sbjct: 332 GLSVAKYVKQVYGVEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQDWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   V   P  I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E   LLVR
Sbjct: 440 LKKVQPVDLFPQTHHVEAVSLLVR 463


>gi|55822623|ref|YP_141064.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus
           CNRZ1066]
 gi|55738608|gb|AAV62249.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
           CNRZ1066]
          Length = 453

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 152/382 (39%), Gaps = 40/382 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61
              Y +QL  K  ++   +     + ++++        P  YR +A+  +      L   
Sbjct: 85  HMTYTEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETG 144

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110
            + + + + + I+ F+     I+ L++   +++    L+P        L+R  + +  + 
Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166
           + Q     VT    +       +   ++ +A  +    IQ I   N T     ++    Y
Sbjct: 205 SGQMMLVFVT---TKPKVFRIDQVIAKITEAFPSIVSIIQNINDKN-TNAIFGKEFRTLY 260

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225
             + +T +     Y     SF Q N  +   + +  +  +       +++ Y G G   L
Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A+    V  VE+ + +VE A+ N   N + N   V  S++            N +   
Sbjct: 321 SFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVADSAE------------NAMAKW 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342
                +   I VDPPR GL ++ +   V   P  I Y+SCNP ++ RD+ +     + ++
Sbjct: 369 SQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKLYQDLGYELK 428

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           ++   D FP T H+EC  LL R
Sbjct: 429 KVQPVDLFPQTHHIECVGLLTR 450


>gi|291548601|emb|CBL24863.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14]
          Length = 567

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 149/395 (37%), Gaps = 37/395 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHI 51
            G  + +  Y++QL  K  ++R  +             V    +    P  YR +A+F  
Sbjct: 78  GGCQIQEMSYDRQLVFKDQKIRGNLERIGGFTKDQIDTVMQPVVGMEHPFGYRNKAQFPF 137

Query: 52  WHDG-DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPL 99
             D   +     +  +T + +       G              +    I+       + L
Sbjct: 138 GADKEGNPITGFYAGRTHDIIANTDCALGVEKNKEILEIILQYMRENKIKSYDEKTGKGL 197

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRAN 156
           +R  L +  + T +    +V         +   E  I++        +   +   +   +
Sbjct: 198 IRHVLIRYGFKTKEIMVCLVVNGKRLPKAERLIEKLIQIEGMTSITISPNTRRDNVIMGD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215
             +I   + Y+ + +      + Y+    SF Q N      +    L  A       + +
Sbjct: 258 SYEILWGQGYITDYIG----NVKYQISPLSFYQVNPVQTEKLYRLALEYADLKGDETVWD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G  SL LA+   +V  VEI   +++ A+ N   N ++N +     ++E       
Sbjct: 314 LYCGIGTISLFLAQKAKQVYGVEIVPQAIDDAKENAKINAIDNAEFFVGKAEEVLPEYYA 373

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333
           E E    ++ +  +     I VDPPR G D+  +  +V+  P  ++Y+SC+  +L RDL 
Sbjct: 374 EYE----REHNGKTAHADVIVVDPPRKGCDETLLETIVKMQPEKVVYVSCDSATLARDLK 429

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            L    + I      DQFP + H+E  VLL  K +
Sbjct: 430 YLCANGYEIRMCRGVDQFPQSVHVETVVLLSHKKA 464


>gi|42519575|ref|NP_965505.1| hypothetical protein LJ1698 [Lactobacillus johnsonii NCC 533]
 gi|51316712|sp|Q74I68|Y1698_LACJO RecName: Full=Uncharacterized RNA methyltransferase LJ_1698
 gi|41583864|gb|AAS09471.1| hypothetical protein LJ_1698 [Lactobacillus johnsonii NCC 533]
          Length = 450

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 153/385 (39%), Gaps = 40/385 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + N+++ +     E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107
               F + + + + +  F      I+ ++I++              I  +  +R    + 
Sbjct: 140 DIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLEVRR 199

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166
              T    + +V L+         +E    + +        + L     KT + L + DY
Sbjct: 200 SKATG---EIMVILVCLHKDFPQLKEVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDY 254

Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           +   + ++T     + ++    SF Q N+     + +  +        D+ ++ Y G G 
Sbjct: 255 LLWGEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGT 314

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A+H   V  +E+ +P+VE A  N   N + N + V   ++E      +E      
Sbjct: 315 IGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKE------ 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
                   +   IFVDPPR GL    +          I+YISCNP ++ RDL +     +
Sbjct: 369 ------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
             + +   D FP T H+E   +L R
Sbjct: 423 DFDEIDPVDMFPQTPHVEAVAVLER 447


>gi|293570978|ref|ZP_06682021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E980]
 gi|291608904|gb|EFF38183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           E980]
          Length = 460

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 144/393 (36%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L Q +  F+            I   EP HYR +A+F +  +
Sbjct: 84  GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143

Query: 55  GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                +   +++  + + + I   +               L+N     +        + R
Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------R 154
             + +I     ++ +  V  I               + + L A    +Q +         
Sbjct: 204 TIMVRIGV---KTGELQVVFITRSKKFPQKNAMIREINERLPAVVSIMQNVQAQKTSLVM 260

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDL 213
            ++T     ++ ++E++      + +     +F Q N      +  E + A        +
Sbjct: 261 GDETIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETI 316

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ YCG G   L +A+    V  ++    ++  A+ N      +N +    ++++     
Sbjct: 317 VDAYCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNAERLGYHNTRYEVGTAEQVLPKW 376

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
             E             ++   I VDPPR+GLD+A +  +  YP   ++YISCN  +L RD
Sbjct: 377 LNE------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYISCNVSTLARD 424

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L  LS    IE L   D FP T   E  V + R
Sbjct: 425 LVDLSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457


>gi|323343147|ref|ZP_08083378.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463211|gb|EFY08406.1| 23S rRNA (uracil-5-)-methyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 456

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 151/388 (38%), Gaps = 42/388 (10%)

Query: 3   GTLLIDQ--YEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDG 55
           GT+ +    Y+ Q   K ++++  +              +    P HYR +A   +    
Sbjct: 85  GTMPLQHMAYDLQCEYKQNQVKATLGRVIDLEGVPVLPTLGMENPWHYRNKATIPVQSVK 144

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
             L    F + T E + ++ F                L+    IE         L+R  +
Sbjct: 145 GVLETGFFKRGTHELIPVENFYIQEEALDKAILVIRDLLRHFKIEAYQEANHTGLIRNIM 204

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +  + T +    +VT    L + + + ++  E   +    +     +   +   ++ +I
Sbjct: 205 VRQGHYTEELMVVLVTNGTELPFEKDIVNSIVEALPKTVSIVQNINTKQTNVILGSEQRI 264

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219
               D   ++L        ++    SF Q N      + +  +   +    D++ + YCG
Sbjct: 265 LFGEDLYHDQLLGK----TFKISSKSFFQINTKQTEVLYQQAIEMAEVTSDDVVVDAYCG 320

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G+ +L LA     V  VEI + ++  A+ N   NH+ NV+     +++      +E   
Sbjct: 321 IGSITLNLADKAKFVYGVEIVEDAIIMAKENAKLNHIENVQFEVGEAEKIMPTWVKE--- 377

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDL-SILS 336
                          + VDPPR GLD   +   +      I+Y+SCNP SL +DL S + 
Sbjct: 378 ---------GIEIDVLVVDPPRKGLDPLFIDAAIASKPRRIVYVSCNPISLAKDLRSFID 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + +E++   D FP T H+E  VLL++
Sbjct: 429 GGYRVEKVQPVDMFPQTTHVETIVLLIK 456


>gi|291531353|emb|CBK96938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
           70/3]
          Length = 383

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 152/387 (39%), Gaps = 42/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60
              L    YEQQL  K     +++  F   +  I   +P +YR + +     D    +  
Sbjct: 14  GCQLSNMTYEQQLEWKQKDTEKLLGGFGKVSEIIGADDPYNYRNKVQAVFRSDRNGRIIS 73

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPL--------LRAKLFQIDY 109
            ++       + ID  M      + +++   E++ + +L P         LR  L ++  
Sbjct: 74  GVYQSSRNGIVGIDSCMLDDKRADEIIVGIRELLRSFKLHPYDEGTECGFLRHVLVRVGK 133

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH-------ARKYQIQLIGRANKTKICL 162
            T    + +VTL+    +     +    L            +     +++      ++  
Sbjct: 134 NTG---EILVTLVGGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEMLLLGENNEVLY 190

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
              Y+ + L        +R   +SF Q N      + ++ + A K  + D+L + Y G G
Sbjct: 191 GEGYITDILCGK----RFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIG 246

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFN 280
              ++ + +  +V  +E    +V  A  N   N +  N+   R  + EF           
Sbjct: 247 TIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEF----------- 295

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
            L+        +  + +DP R+G D   +  +   A   I+YISCNP +  RDL  L+  
Sbjct: 296 -LEKKTKLGTHYDAVILDPARTGADRKFLNSLLKIAPERIVYISCNPATQARDLKTLTKK 354

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +T+  +  FD FP+TRH+EC V + RK
Sbjct: 355 YTVTDIQPFDMFPHTRHVECVVAMSRK 381


>gi|251782756|ref|YP_002997059.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391386|dbj|BAH81845.1| hypothetical protein SDEG_1350 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 453

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 147/382 (38%), Gaps = 40/382 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K  +++  +           N  I    P+ YR +A+  +      L    F 
Sbjct: 88  YEDQLRFKQKQVQDNLYKIAGINDVTVNQTIGMDNPLAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  +      I+ L            ++         L+R  + +  + +  
Sbjct: 148 KHSHDLVPISDYYIQDKEIDRLINFTRELLRRFDVKPYDEKGQTGLIRHIVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++ L+  R       +   ++ ++  A    IQ I   N T     +D    Y  +
Sbjct: 207 --EMMLVLVTTRPKVFRVDQVISKIVESFPAVVSIIQNINDKN-TNAIFGKDFKTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +T +     +     SF Q N  +   + +  +A +   + D+ ++ Y G G   L  A
Sbjct: 264 TITDSMLGNDFAISAQSFYQVNTVMAEKLYQTAIAFSDLSEDDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V+ A+ N A N + NV  V  +++       +E            
Sbjct: 324 KTVKAVYGVEVIEAAVKDAQQNAARNGITNVHFVADTAENAMATWAKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I Y+SCNP ++ RD+       + + ++ 
Sbjct: 372 DIKPSVILVDPPRKGLTESFIQASVAMGPQKITYVSCNPATMARDIKRYQDLGYKLTKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKPS 367
             D FP T H+EC  L+ R  S
Sbjct: 432 PVDLFPQTHHVECIALIQRMKS 453


>gi|81429088|ref|YP_396088.1| TrmA family RNA methyltransferase [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610730|emb|CAI55781.1| Putative RNA methyltransferase, TrmA family [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 463

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 146/385 (37%), Gaps = 39/385 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QLA K D + Q +  F+            +    P HYR +A+F +   GD 
Sbjct: 91  LEHLSYPGQLAFKKDMMIQALEKFKPHGYNGYQVTETVGMENPWHYRNKAQFQVRQLGDH 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106
           L   ++   +   + +  F   +            L+  L I +    +   +L+  + +
Sbjct: 151 LGAGLYAPSSHTLIDLPEFATQTDLTMRIIRTVLKLVEDLGIPVFDEEKNAGILKTIVVR 210

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             + T ++    +T         A       ++  L      +Q + +     +  D+  
Sbjct: 211 ESFSTGEAQLTFITNSPKLPKKYA---LITAIQAELPEVVSIMQNVNKGKNVLVWGDQTM 267

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
                E +      + +     +F Q N      M   V  A      D L++ YCG G 
Sbjct: 268 HLAGQETIMENLNGVQFELTARAFFQLNPVQTAKMYNLVKEALDLTPEDRLVDAYCGVGT 327

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA     V  ++    S+EAA++N   N ++NV     ++++             L
Sbjct: 328 IGLSLANQVAEVRGMDTIADSIEAAKHNAEINGIDNVDYAVGAAEDL------------L 375

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHT 340
            +   + +    + VDPPR+GLD   +  +        +Y+SCNP +L RDL  L  T+ 
Sbjct: 376 PEWLDNGFVPTALVVDPPRTGLDPKLIDAILDSRPLKFVYVSCNPSTLARDLKTLVHTYQ 435

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +E++   D FP T  +E  V +  K
Sbjct: 436 VEKIQPLDMFPQTARVEAIVTMRLK 460


>gi|329121754|ref|ZP_08250371.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
 gi|327468224|gb|EGF13710.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
          Length = 648

 Score =  273 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 143/392 (36%), Gaps = 41/392 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDD 57
             +    YE QL  K +R++ ++      +       +  +  + YR +    I      
Sbjct: 83  CQIPELSYEGQLKFKFNRVKSVISRIGKQDENKVLPVVSATHIVGYRNKMSIPIGTQNGK 142

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                +   T E +     M  +             IN   I +      +  +R  + +
Sbjct: 143 AVSGYYKSGTHEIIPSTDCMIQNETNNKLAKFAQDFINKNKITVYNEKTHKGSVRHIVGR 202

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--- 163
           I     +    IVT        + W E   +    + +  + +Q      KT + L    
Sbjct: 203 IGD-DGKLMAVIVTSTNELPCKEKWIEEMRKSVPEVISIYHNVQD----KKTNVILGNKM 257

Query: 164 -RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
              + ++ L  +   L +     SF Q N      + E  L  A       +++ YCG G
Sbjct: 258 EHIWGEKTLKASIGKLTFEISPYSFFQVNKEQVEKLYEKALDFANLSGDETVIDAYCGTG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA+    V+ +EI K ++E A+ N   N + NV+       ++            
Sbjct: 318 TISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAKY------------ 365

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TT 338
           L ++     + + + +DP R+G D+  +  +       I+Y+SCN  +  RD+  LS   
Sbjct: 366 LPELAKKGIKAEVVVLDPVRAGCDEKVIEAIGKINPERIVYVSCNVATQARDIERLSKKG 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           + + ++   D FP T H+E   LL +     H
Sbjct: 426 YKLIKIQPIDMFPQTTHVETVALLYKLDVDKH 457


>gi|306820595|ref|ZP_07454224.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551326|gb|EFM39288.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 156/388 (40%), Gaps = 41/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGD 56
              +L   Y  QL  K D + Q +        P +   +    P  YR + +  +     
Sbjct: 80  GCQILDISYNNQLKIKKDMVFQKLTRIGKIDNPKINDVVGMDSPFRYRNKVQLPVGGTIG 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
           D+    + Q+T + +     +    + N ++  +   +    +           LR  + 
Sbjct: 140 DVKIGFYRQKTHDIIPFKDCIIQDEINNEIIKMIKNYMSFAKIIPYNEKDSTGVLRHIVT 199

Query: 106 QIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +I    SQ    +VT    +L    L +  ++  + +   +     +   +  ++   + 
Sbjct: 200 KISNDKSQIMLILVTNTDKKLDISYLVEEIKKNNLNITSIIQNINKKNTNVILSSDNILL 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220
              DY+ E +      L ++   NSF Q N      M    L      + D++ +LYCG 
Sbjct: 260 YGNDYITEYI----DDLKFKIYPNSFFQVNYTQMEKMYNKALDYASIDKDDVVYDLYCGI 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL+LA+    V  +E+ + S+ +A+ N   N++ NV+ +    +            N
Sbjct: 316 GTISLLLAKRAKYVYGIEVVQQSITSAKENARENNIENVEFICGKVE------------N 363

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL--S 336
            +K +   +     I +DP R G +   +  +   +   I+YISCNP +L RDL IL  S
Sbjct: 364 EIKALIKKAKSPDIIVLDPARKGCEVTVLDTILSVSPKKIVYISCNPSTLARDLKILLDS 423

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + +E +  FD F ++ H+E  VLL +
Sbjct: 424 GKYILEEVTPFDLFCHSTHIENVVLLSK 451


>gi|55820731|ref|YP_139173.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG
           18311]
 gi|55736716|gb|AAV60358.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG
           18311]
          Length = 453

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 150/382 (39%), Gaps = 40/382 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61
              Y +QL  K  ++   +     + ++++        P  YR +A+  +      L   
Sbjct: 85  HMTYTEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETG 144

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110
            + + + + + I+ F+     I+ L++   +++    L+P        L+R  + +  + 
Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166
           + Q     VT    +       +   ++ +A       IQ I   N T     ++    Y
Sbjct: 205 SGQMMLVFVT---TKPKVFRIDQVIAKITEAFPNIVSIIQNINDKN-TNAIFGKEFRTLY 260

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225
             + +T +     Y     SF Q N  +   + +  +  +       +++ Y G G   L
Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDFSDLNSDSIVIDAYSGIGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A+    V  VE+ + +VE A+ N   N + N   V  S++            N +   
Sbjct: 321 SFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYVANSAE------------NAMAKW 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342
                +   I VDPPR GL ++ +   V   P  I Y+SCNP ++ RD+       + ++
Sbjct: 369 SQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKRYQELGYELK 428

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           ++   D FP T H+EC  LL R
Sbjct: 429 KVQPVDLFPQTHHIECVGLLTR 450


>gi|291518105|emb|CBK73326.1| 23S rRNA m(5)U-1939 methyltransferase [Butyrivibrio fibrisolvens
           16/4]
          Length = 460

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 151/393 (38%), Gaps = 42/393 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52
              ++   Y++QL  K + +   ++            +    +  +EP+ YR +A+  I 
Sbjct: 79  GCQIMQVSYDKQLEIKDNIVANNLVKIGGYDRAFVDSIREPILGMAEPLRYRNKAQVPIG 138

Query: 53  HDGDDLY-HIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLL 100
            D D       +  ++   +  D     S             +    +        + L+
Sbjct: 139 TDKDGNIIAGFYGARSHRIVPSDDCKICSKKSMNIVYAVIDYMKECGVSAYNEATGKGLI 198

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRAN 156
           R  L +    T ++   +V         D        +   L +    I      +    
Sbjct: 199 RHVLVREGKATGETMVCVVVNGDKLPKVDTLVAHVKSVEPELASLVLNINTRRDNVIMGY 258

Query: 157 KTKICLDRDYVDERLTV-AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLL 214
           +TK+   ++ + + +T+  G T+ +    NSF Q N      +    L  A    + ++ 
Sbjct: 259 ETKVLYGKEAIRDTITLTNGDTIAFDISANSFYQVNHDQMERLYSKALEYAGLTGKEEVW 318

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  SL +A+H   V+ +E+   ++E A+ N   N ++N +     ++       
Sbjct: 319 DLYCGIGTISLSMAKHAGHVIGIEVVPQAIENAKANAKLNGLDNTEFYCGEAEVV----- 373

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332
                  L +I         I VDPPR G D   +  M++  P  I+Y+SC+  +L RDL
Sbjct: 374 -------LPEIYEKMSHPDVIMVDPPRKGCDVVALDTMIKMQPERIVYVSCDSATLARDL 426

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364
             L    + +++  + DQF +T H E   +L +
Sbjct: 427 KHLEENGYHLQKYTVCDQFGHTMHTETVAILAK 459


>gi|329667821|gb|AEB93769.1| hypothetical protein LJP_1447c [Lactobacillus johnsonii DPC 6026]
          Length = 450

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 153/385 (39%), Gaps = 40/385 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + N+++ +     E   YR +A+  +      L
Sbjct: 80  ASLANIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107
               F + + + + +  F      I+ ++I++              I  +  +R    + 
Sbjct: 140 DIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLEVRR 199

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166
              T    + +V L+         +E    + +        + L     KT + L + DY
Sbjct: 200 SKATG---EIMVILVCLHKDFPQLKEVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDY 254

Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           +   + ++T     + ++    SF Q N+     + +  +        D+ ++ Y G G 
Sbjct: 255 LLWGEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGT 314

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A+H   V  +E+ +P+VE A  N   N + N + V   ++E      +E      
Sbjct: 315 IGLSVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKE------ 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
                   +   IFVDPPR GL    +          I+YISCNP ++ RDL +     +
Sbjct: 369 ------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
             + +   D FP T H+E   +L R
Sbjct: 423 DFDEIDPVDMFPQTPHVESVTVLER 447


>gi|312864156|ref|ZP_07724390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           vestibularis F0396]
 gi|311100157|gb|EFQ58366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           vestibularis F0396]
          Length = 451

 Score =  272 bits (696), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 150/386 (38%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L+  +Y++QL  K D L Q +  F+  N +       I   +P HYR + +F     
Sbjct: 81  GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMEQPQHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYLT 111
           G  +   +F + +   + ID  +    L  A+M +   ++   +L      K+  I  + 
Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAMMNKVTSLLDKYKLPIYNERKISGIRTVM 200

Query: 112 SQ----SDQAIVTLIYHRL--LDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKICL 162
            +    S+Q  +  +  +   L    +E  +R  + +       Y         +T+I  
Sbjct: 201 IRRALGSNQVQLIFVTSKSVSLTKLVKELTLRYPEIVTVAINYNYSKSSEIYGQETEIIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNG 221
            +D + E +      L       +F Q N      +    + A        L++ YCG G
Sbjct: 261 GQDTIQEEVLDYNFAL----SPRAFYQLNPKQTEVLYSQAVEALEVDKDEHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L        +  ++I   ++E AR N  +  + N       +++      +E     
Sbjct: 317 TIGLAFVNKVKSIRGMDIIPEAIEDARKNAKSLGLGNTHYEVGKAEDIIPRWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLKTILEYTPKKMVYVSCNVSTLARDLVSLAKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLTKK 450


>gi|291545409|emb|CBL18517.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus sp.
           SR1/5]
          Length = 390

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 149/380 (39%), Gaps = 42/380 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHIMFDQQT 67
            Y++QL  K      ++  F      I   +P +YR +       D   ++   ++++++
Sbjct: 23  SYQEQLRRKQRITEGLLKKFGKVEPIIGMEDPYYYRNKVHAAFGRDRKGNVISGIYEEKS 82

Query: 68  KERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
              + +D  M        +            I+         LLR  L +  + T +   
Sbjct: 83  HRIVSVDDCMIEDKKSQEIIRTIRGMLKSFKIKTYDEDTGYGLLRHVLVRRGFSTGEIMV 142

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDE 169
            +VT+     +  +       LR         +  +          ++  +     ++ +
Sbjct: 143 VLVTV---SPIFPSKNNFVKALRKEYPEITTVVLNVNDRQTSMVLGDRNIVLYGPGFIKD 199

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228
           RL      L +R   +SF Q N      +    +  A    +  +++ YCG G   ++ +
Sbjct: 200 RLM----GLTFRISPSSFYQVNPVQTEVLYGKAMEFAAMTGKERVIDAYCGTGTIGIIAS 255

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
            +   V+ VE+ + ++  AR N   N + NV+ V   +  F + M  E E          
Sbjct: 256 GNARDVIGVELNRDAIRDARMNARENKIRNVRFVPGDAGWFMEGMAAEGE---------- 305

Query: 289 SYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTT-HTIERLA 345
             + + + +DPPRSG D   +   +  +   I+Y+SCNP++L RDL+ L+   + ++++ 
Sbjct: 306 --KVEVVLMDPPRSGSDRKFLHSLLTLSPEKIVYVSCNPETLARDLACLTKRDYLVKKMQ 363

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T  +E   LL  +
Sbjct: 364 PVDMFPLTDSVEVVCLLENR 383


>gi|270291082|ref|ZP_06197305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
           acidilactici 7_4]
 gi|270280478|gb|EFA26313.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
           acidilactici 7_4]
          Length = 455

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 147/378 (38%), Gaps = 39/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QL  K  +++ ++    +  +++        P  YR +A+  +      L    F +
Sbjct: 93  YPAQLKFKQTQIKNLLQKSHLEQIEVAETVGMENPTGYRNKAQVPVRKVKGQLATGFFKR 152

Query: 66  QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            + + + I+ F     +I+              IE    I    ++R  + +    + + 
Sbjct: 153 GSHDLVPIEDFYIQDPVIDQVILKVRDILREYQIEPYDEINQRGVVRNIMVRRGRRSGEI 212

Query: 115 DQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
              ++T        D   E   ++      +     +   +    + ++      + + L
Sbjct: 213 MVVLITRTSSVPHLDEIAEAIHQIDGVVSVIQNINPKQTNVIMGKEDRLLAGESVIHDEL 272

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230
                   +    +SF Q N      + +  +  A    +  +L++Y G G  SL +A+ 
Sbjct: 273 L----GQKFIISAHSFYQVNPVQTEKLYQLAIKKAGLTGKETVLDVYSGIGTISLAMAQA 328

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V  VEI K +V+ A+ N   N   NVK V   +++     + E              
Sbjct: 329 AKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFVVGKAEDQMAKWQAE------------GM 376

Query: 291 RFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHTIER-LAL 346
           +   + VDPPR GLD++ +      A   ++Y+SCNP +L RD+    +  + +++ +  
Sbjct: 377 QPDVVVVDPPRKGLDESVIDATVAMAPKRVVYVSCNPATLVRDIDRFQAQGYKVDQPITP 436

Query: 347 FDQFPYTRHMECGVLLVR 364
            DQFP T H+E   ++ R
Sbjct: 437 VDQFPQTPHVESVTVMSR 454


>gi|227550544|ref|ZP_03980593.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
 gi|257897054|ref|ZP_05676707.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com12]
 gi|293378745|ref|ZP_06624903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           PC4.1]
 gi|227180445|gb|EEI61417.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium TX1330]
 gi|257833619|gb|EEV60040.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com12]
 gi|292642673|gb|EFF60825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
           PC4.1]
          Length = 460

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 146/390 (37%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L Q +  F+            I   +P HYR +A+F +  +
Sbjct: 84  GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDDPWHYRNKAQFQLRKN 143

Query: 55  GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                    +++  + + + I   +               L+N     +        + R
Sbjct: 144 KQTQKTEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + +I   T +     +T        +A  RE   RL +    +   + Q   +   ++
Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++E++      + +     +F Q N      +  E + A        +++ 
Sbjct: 264 TIHVWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDAQPDETIVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A+    V  ++    ++  A+ N      +N +    ++++       E
Sbjct: 320 YCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKWLNE 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                        ++   I VDPPR+GLD+A +  +  +P   ++YISCN  +L RDL  
Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYISCNVSTLARDLVH 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           LS    +E L   D FP T   E  V + R
Sbjct: 428 LSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457


>gi|257888569|ref|ZP_05668222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,141,733]
 gi|257824623|gb|EEV51555.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,141,733]
          Length = 460

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 146/390 (37%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L Q +  F+            I   +P HYR +A+F +  +
Sbjct: 84  GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDDPWHYRNKAQFQLRKN 143

Query: 55  GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                    +++  + + + I   +               L+N     +        + R
Sbjct: 144 KQTQKTEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + +I   T +     +T        +A  RE   RL +    +   + Q   +   ++
Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++E++      + +     +F Q N      +  E + A        +++ 
Sbjct: 264 TIHVWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALGAQPDETIVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A+    V  ++    ++  A+ N      +N +    ++++       E
Sbjct: 320 YCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKWLNE 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                        ++   I VDPPR+GLD+A +  +  +P   ++YISCN  +L RDL  
Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYISCNVSTLARDLVH 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           LS    +E L   D FP T   E  V + R
Sbjct: 428 LSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457


>gi|327474823|gb|EGF20228.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK408]
          Length = 469

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 152/384 (39%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +              +   +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           +   +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 216 HYLGEIMVILVTTRPKIFRVERLMEHLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +  ++    D+ L+ Y G G  
Sbjct: 276 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+   +V  VE+   +VE +R N   N + N   V   ++E  Q   +E       
Sbjct: 332 GLSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYVCAPAEEAIQNWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   +   P  I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMARDIKLYQELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E   LLVR
Sbjct: 440 LKKVQPVDLFPQTHHVEAVSLLVR 463


>gi|313904355|ref|ZP_07837733.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6]
 gi|313470905|gb|EFR66229.1| RNA methyltransferase, TrmA family [Eubacterium cellulosolvens 6]
          Length = 490

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 146/407 (35%), Gaps = 56/407 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----------------------VPNLQIFRS 38
              L    YE +L  K +++R  +                                +   
Sbjct: 92  GCQLQHMTYEAELQLKENKVRNDLERIGGIVTERRTADAGSEDQADRTGNVRMEPIVGMD 151

Query: 39  EPIHYRMRAEFHIWHDG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
               YR +A+F I  DG  +     +   +   +  +    G      ++  ++  ++ +
Sbjct: 152 VNRRYRNKAQFPIGEDGQGNPVAGFYAGHSHRIIPCEDCQLGVEENREILRAVLDWMKEQ 211

Query: 98  -----------PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH--- 143
                       ++R  L +  + T +    ++         DA  +    L+  +    
Sbjct: 212 RVAAYNEETGKGIVRHVLIRKGFATGEIIVCLIINARELPRKDALIDRLSVLKGMVGITI 271

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL--IYRQIENSFTQPNAGINVHMLEW 201
           +   +   +      +    R  +++ L      +   Y     SF Q N      + + 
Sbjct: 272 SSNTKKTNVIMNAPVRTIWGRGEIEDILRSEAFGVQVRYSISPASFYQVNPVQTEKIYQK 331

Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           VL  A       +++LYCG G  SL LA    +V+ VEI   ++E A+ N A N + N +
Sbjct: 332 VLELADLSGTETVMDLYCGIGTISLFLAAKAAKVIGVEIVPEAIEDAKKNAAMNGIENAE 391

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHI 318
                ++E   A+                 +   + VDPPR G D   +  +       +
Sbjct: 392 FYVGKAEEVVPALYA------------KGAKADVVVVDPPRKGCDQKLLDTILQMDPGRL 439

Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +Y+SC+P +L RDL  L+   + ++ +  +DQF +T H+E   LL +
Sbjct: 440 VYVSCDPATLARDLKFLTANGYELKYVQPYDQFCHTVHVETCCLLEK 486


>gi|325696032|gb|EGD37923.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK160]
          Length = 465

 Score =  272 bits (695), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 158/385 (41%), Gaps = 40/385 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +     + ++++       +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYSAQLDFKRKQVKDSLYKIAGLSDVEVLPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           +   +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 216 HYLGEIMVILVTTRPKIFRVERLMEHLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +  ++    D+ L+ Y G G  
Sbjct: 276 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+   +V  VE+   +VE +R N   N + N   V   ++E  Q   +E       
Sbjct: 332 GLSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYVCAPAEEAIQNWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   +   P  I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMSRDIKLYQELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++++   D FP T H+EC  LLV++
Sbjct: 440 LKKVQPVDLFPQTHHVECVSLLVKR 464


>gi|241896472|ref|ZP_04783768.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella
           paramesenteroides ATCC 33313]
 gi|241870194|gb|EER73945.1| TrmA family tRNA (uracil-5-)-methyltransferase [Weissella
           paramesenteroides ATCC 33313]
          Length = 469

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 151/383 (39%), Gaps = 39/383 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L   +Y+ QL  K  ++ ++     +       I    P  YR +A+         L   
Sbjct: 102 LAHLKYDAQLKFKQQQIAELFSKQHIDVNVAPTIGMENPTGYRNKAQIPAREIKGQLTTG 161

Query: 62  MFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYL 110
            F + +   M I+ F      I+              +     I  + ++R  + +  Y 
Sbjct: 162 FFRRGSHRLMPIEDFYIQDPEIDKAIVIIRDILRKFHVPAYDEIHHKGVIRNIMVRRGYY 221

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
              S + +V L+              ++++ L      IQ + +     I  D ++V   
Sbjct: 222 ---SHEMMVVLVTRSKRIPGANIIIPQIKEVLPEVTSIIQNVNQDKTNVILGDVNHVLWG 278

Query: 171 LTVAGRTL---IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
             V   TL    +    NSF Q N      +L  + A    + G+  +++ Y G G  SL
Sbjct: 279 NKVIKDTLFDKTFAIGPNSFYQVNP-QTTEILYKLAADKAELTGNETVIDAYSGIGTISL 337

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A     VL VE+   +V+ A+ N   N+V+NVK     ++E   A +++         
Sbjct: 338 TIADKVKSVLGVEVVPGAVDDAKRNADLNNVHNVKFELGKAEEKMVAWQQD--------- 388

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIE 342
                +   IFVDPPR GL    +    A     I+YISCNP +L RD++      +TI+
Sbjct: 389 ---GLKPDVIFVDPPRKGLTTELIDAASAMAPSKIVYISCNPATLVRDVAQFKENGYTIK 445

Query: 343 -RLALFDQFPYTRHMECGVLLVR 364
             +   DQFP T H+E   +L R
Sbjct: 446 GDVQPVDQFPQTTHIESVTVLER 468


>gi|225870131|ref|YP_002746078.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047]
 gi|225699535|emb|CAW93112.1| putative RNA methyltransferase [Streptococcus equi subsp. equi
           4047]
          Length = 543

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 135/379 (35%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y QQL  K  +++  +              I    P  YR +A+  +      L    F 
Sbjct: 88  YPQQLLFKQKQVQDSLYKIAGISNVEVKETIGMEYPYAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + E + I  F      I+ L            I+         L+R  + +  + + +
Sbjct: 148 KHSHELVPISDFYIQDKEIDRLIAFTRDLLRRFDIKPYDEKEQSGLIRHLVVRRGHYSGE 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDE 169
               +VT    R       +    L     A    +Q I     T +       R Y  E
Sbjct: 208 IMLVLVT---TRPKIFRINQMIDSLVAEFPAITSILQNIND-KPTNVIFGKAFTRLYGKE 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +T       Y     SF Q N  +   + +  +  ++    D+ ++ Y G G   L  A
Sbjct: 264 TITDTILGNQYCISAQSFYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A  N A N + N   V  S++       +E            
Sbjct: 324 KEVKAVYGVEVIEAAVRDAEKNAALNGITNAYYVADSAENAMANWCQE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +    A     I YISCNP ++ RD+       + ++++ 
Sbjct: 372 GIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMARDIKRYEELGYKLQKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 432 PVDLFPMTHHVETVALLSK 450


>gi|302871091|ref|YP_003839727.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302573950|gb|ADL41741.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 442

 Score =  271 bits (694), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 162/386 (41%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L+  +Y+ QL+ K   +          N +I       +P  YR +    +  D  +
Sbjct: 71  GCHLMHAKYQYQLSLKKLLVEDAFRRIGKLNPRINDVIGMEKPFRYRNKTALPVGEDYKN 130

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
                + + T + + IDY +               LI    IE+ +  + + +LR  + +
Sbjct: 131 PQIGFYKKMTHDIVDIDYCLIQHEVCDDVIKGMKDLIRKYNIEVYSEKKHQGVLRHIVVR 190

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             +     ++ ++ L+  ++ +D        L    + +   + L     +T + L  + 
Sbjct: 191 NSFA---FNEMMLILVCTKVPEDLENIKKDILNKFPNIKSLYVNLNP--KRTNVILGEED 245

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
              +    +      LI+     SF Q N+     +   V+   + I  +++ ++Y G G
Sbjct: 246 ILIWGSNTIKDKIGNLIFEISPKSFFQVNSIQTELLYNQVVKYLRNIDAEVVFDVYSGIG 305

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             S+ +A    +V ++EI + +VE A+ +   N ++N++ +  +++              
Sbjct: 306 TISMFVAPFCKKVYSIEIVEDAVEDAKKSSKNNGISNIEFICANAE------------IE 353

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TT 338
           +  +       + + +DPPRSG + A +  +  Q  P+I+Y+SCNP +L RD SIL    
Sbjct: 354 IPKLMEKGIIPQVVILDPPRSGCEKALLESLIKQKIPNIIYVSCNPSTLARDSSILCSNG 413

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + I  +   D FP T H+EC VL+ R
Sbjct: 414 YEIVEVQPVDMFPQTFHVECVVLMSR 439


>gi|225868865|ref|YP_002744813.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus]
 gi|225702141|emb|CAW99828.1| putative RNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 543

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 136/385 (35%), Gaps = 40/385 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y QQL  K  +++  +              I    P  YR +A+  +      L    F 
Sbjct: 88  YPQQLLFKQKQVQDSLYKIAGISNVEVKETIGMEYPYAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + E + I  F      I+ L            I+         L+R  + +  + + +
Sbjct: 148 KHSHELVPISDFYIQDKEIDRLIAFTRDLLRRFDIKPYDEKEQSGLIRHLVVRRGHYSGE 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDE 169
               +VT    R       +    L     A    +Q I     T +       R Y  E
Sbjct: 208 IMLVLVT---TRPKVFRINQMIDSLVAEFPAITSILQNIND-KPTNVIFGKAFTRLYGKE 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +T       Y     SF Q N  +   + +  +  ++    D+ ++ Y G G   L  A
Sbjct: 264 TITDTILGNQYCISAQSFYQVNTTMAEKLYQTAIDFSELTADDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A  N A N + N   V  S++       +E            
Sbjct: 324 KEVKAVYGVEVIEAAVRDAEKNAALNGITNAYYVADSAENAMANWCQE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +    A     I YISCNP ++ RD+       + ++++ 
Sbjct: 372 GIKPTVIIVDPPRKGLTESFIKASAAMQPDKITYISCNPATMARDIKRYEELGYKLQKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370
             D FP T H+E   LL +     H
Sbjct: 432 PVDLFPMTHHVETVTLLSKLNVDKH 456


>gi|126649520|ref|ZP_01721761.1| RNA methyltransferase, TrmA family protein [Bacillus sp. B14905]
 gi|126593845|gb|EAZ87768.1| RNA methyltransferase, TrmA family protein [Bacillus sp. B14905]
          Length = 465

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 87/389 (22%), Positives = 153/389 (39%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    YE+QL+EK D + Q +  +  P  +       +    P HYR +++F +  +
Sbjct: 88  GCQLQHMTYEKQLSEKRDIVIQALERYAKPLAETVEVRKTLGMDNPWHYRNKSQFQVRKE 147

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
           G  +Y  +F + + + + I+  +               ++  L I +     L+ L+R  
Sbjct: 148 GKRVYAGLFVEGSNKLLNINDCLVQHPVTSKVTVATRKILQKLNITIYDGRTLDGLVRTI 207

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +    T ++   +VT    R       E   R++    +     Q I R  KT +   
Sbjct: 208 VVRTGIRTGETQVVLVT---TRKEIPHLAELITRIKKIDPSIVSIAQNINR-EKTSLIFG 263

Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            + +     E +      L +     +F Q N    VH+  E   AA    +  +++ YC
Sbjct: 264 DETIVLDGKETIHEELGELAFDLSARAFFQLNPTQTVHLYNEIKKAAALTGKESIVDAYC 323

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +++   S++ AR N   +   + K    +++      R+E  
Sbjct: 324 GVGTVGLWLADQAQEVRGMDVIPESIQDARKNARNHGFKHTKYAVGTAESVLAKWRKE-- 381

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336
                      +    I VDPPR+GL    +  V        +Y SCNP +L +DL  LS
Sbjct: 382 ----------GFTPDVITVDPPRTGLAPEFIQTVLKLKPKRFVYTSCNPSTLAKDLQQLS 431

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +E +   D F  T  +EC   +V K
Sbjct: 432 KLYHVEYIQPVDMFSQTAQVECVCSMVLK 460


>gi|291562935|emb|CBL41751.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
           SS3/4]
          Length = 475

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 84/407 (20%), Positives = 144/407 (35%), Gaps = 60/407 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------------------VPNLQIFRSEP 40
              L    Y++QL  K  ++   +                         V    I   +P
Sbjct: 81  GCQLQELDYKEQLKFKEKKVYNHLKRIGGMENLFLPEEAEQAEGVQDAVVMEPIIGMEDP 140

Query: 41  IHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRI-------------DYFMPGSLLINAL 86
             YR +A++ I            F  +T   + +             DY       +   
Sbjct: 141 WRYRNKAQYPIGRGKDGKPTAGFFAGRTHSLIPVPELDCLLGCLENKDYLAAVLKFMEDF 200

Query: 87  MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146
            +E       + L+R  L +  + + +    +V  I  + L    +E   RL +      
Sbjct: 201 GVEPYDEANHKGLVRHVLLRKGFASGEHMVCLV--INGKKL-PHEKEFIERLHE---TGA 254

Query: 147 YQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
             I L     KT + L  +    Y    +T     + YR    SF Q N      +    
Sbjct: 255 DSISLSFNMEKTNVILGTEIKNLYGPGYITDKIGNIEYRISPLSFYQVNPVQTERLYGTA 314

Query: 203 LAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L       G+ + +LYCG G  S  LA+   +V  VEI   ++E AR N   N ++NV+ 
Sbjct: 315 LEFADLNGGETVWDLYCGIGTISSFLAQKAGKVCGVEIIPAAIEDARENAKRNGLDNVEF 374

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319
               ++E       +           +  +   I VDPPR G D+  +  +   A   ++
Sbjct: 375 FVGKAEEVLPEQYEK-----------NHIKADVIVVDPPRKGCDELCLETIVKMAPEKVV 423

Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           Y+SC+  +L RD+       + ++R+   D F  + H+E   LL +K
Sbjct: 424 YVSCDSSTLARDVKYFGENGYAVKRVRTVDMFGMSGHVETVALLTKK 470


>gi|315222549|ref|ZP_07864438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus F0211]
 gi|315188235|gb|EFU21961.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus F0211]
          Length = 453

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 157/387 (40%), Gaps = 40/387 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +Y +QL  K  ++R  +     + ++++        P+HYR +A+  +      L 
Sbjct: 83  LGHLKYSEQLKFKTKKVRDNLYKIAEIADIEVAPTLGMDHPLHYRNKAQVPVRRVNGQLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + + + M I+ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHDLMPIEDFYIQDSVIDQVVLAVRDLLRRFDLKPYDEKEQSGLIRNIVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L +        ++  +     Q        +  +   +
Sbjct: 203 HYSGEIMVILVTTRPKIFRVNQLIEQLVVRFPNIKSIMQNINDQSGNAIFGKEFHVLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY+ +R+        ++    +F Q N  +   + +  +   +    D +++ Y G G  
Sbjct: 263 DYITDRMLDND----FQIAAPAFYQVNTEMAEKLYQTAIDFAELSTEDIVVDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N ++N   V  S++            N +K
Sbjct: 319 GLSVAKHVKEVYGVEVIPQAVENSKKNAELNSISNAHYVCDSAE------------NAIK 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   V   P  I+YISCN  ++ RD+ +     + 
Sbjct: 367 KWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIIYISCNVATMARDIKLYQELGYK 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           + ++   D FP T H+EC  L+ R  S
Sbjct: 427 LTKVQPVDLFPMTHHVECIALIQRVKS 453


>gi|291527662|emb|CBK93248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium rectale
           M104/1]
          Length = 418

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 149/375 (39%), Gaps = 34/375 (9%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQT 67
           +Y++QL  K   +++++  F      +    P++YR +            +    + + T
Sbjct: 59  EYKEQLKTKQAYMKKLLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRRGQIVAGAYRKNT 118

Query: 68  KERMRIDYFMP----GSLLINAL-------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            + + I+  M        +I  +        I+         LLR  L +  Y T    Q
Sbjct: 119 HDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYATG---Q 175

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTV 173
            +V L+    +  +       LR         +  +     + +  DR+   Y    +  
Sbjct: 176 IMVVLVLASPILPSKNNFVKALRKKHPNITTVVLNVNDKRTSMVLGDRNITLYGKGFIED 235

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFD 232
                 +R    SF Q N      + E  +  A    +  +++ YCG G   ++ A++  
Sbjct: 236 KLCGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERVIDAYCGTGTIGIIAAKNAG 295

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE+ + ++  A  N   N + N++     + +F   M +               + 
Sbjct: 296 EVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVEMAQ------------KGEKA 343

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             + +DPPR+G D+A +  V   +   ++Y+SC P++L RDL  L+   + ++R   +D 
Sbjct: 344 DVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLARDLKYLTKHGYAVKRATPYDC 403

Query: 350 FPYTRHMECGVLLVR 364
           FPYT H+E  VLL R
Sbjct: 404 FPYTEHIETVVLLCR 418


>gi|116627537|ref|YP_820156.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
           LMD-9]
 gi|116100814|gb|ABJ65960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           thermophilus LMD-9]
 gi|312278056|gb|ADQ62713.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
           thermophilus ND03]
          Length = 453

 Score =  271 bits (694), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 151/382 (39%), Gaps = 40/382 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHI 61
              Y +QL  K  ++   +     + ++++        P  YR +A+  +      L   
Sbjct: 85  HMTYTEQLKFKRKQVVDNLYKTAGISDVEVAETLGMETPYAYRNKAQVPVRRVKGQLETG 144

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYL 110
            + + + + + I+ F+     I+ L++   +++    L+P        L+R  + +  + 
Sbjct: 145 FYRKNSHDLIPIEDFLIQDKEIDKLIVFVRDLLRRYDLKPYDEKEQTGLIRHLVVRRGHY 204

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166
           + Q     VT    +       +   ++ +A  +    IQ I   N T     ++    Y
Sbjct: 205 SGQMMLVFVT---TKPKVFRIDQVIAKITEAFPSIVSIIQNINDKN-TNAIFGKEFRTLY 260

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL 225
             + +T +     Y     SF Q N  +   + +  +  +       +++ Y G G   L
Sbjct: 261 GQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQIAIDFSDLNSDSIVIDAYSGIGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A+    V  VE+ + +VE A+ N   N + N   V  S++            N +   
Sbjct: 321 SFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYVANSAE------------NAMAKW 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIE 342
                +   I VDPPR GL ++ +   V   P  I Y+SCNP ++ RD+       + ++
Sbjct: 369 SQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKRYQELGYELK 428

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           ++   D FP T H+EC  LL R
Sbjct: 429 KVQPVDLFPQTHHIECVGLLTR 450


>gi|224543217|ref|ZP_03683756.1| hypothetical protein CATMIT_02417 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523850|gb|EEF92955.1| hypothetical protein CATMIT_02417 [Catenibacterium mitsuokai DSM
           15897]
          Length = 448

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 153/386 (39%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L+     +Q + K +R+++  L     +L++       +P HYR + +         
Sbjct: 79  GCSLMHMSDCEQQSFKTNRVKETFLKIAHQDLEVNDCLMDMDPYHYRNKVQVPFGKKDGH 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLR-AKLFQIDYLTSQ 113
           +    +  +T + +  DY +  +   N ++    E+     ++P  +  K   I ++ ++
Sbjct: 139 IVSGFYKARTNDIINNDYCLIQNEFSNKVIKRIKELFEEYHIQPYDKITKSGNIKHVLTK 198

Query: 114 S----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
           +    ++A+V  I ++       E    L +     +  IQ I           + K+  
Sbjct: 199 TSYHKNEAMVVFISYKKKIPHIHEIIDILTNEYPEIRTIIQNINPRHDNVILGEEEKVLY 258

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNG 221
              Y+++ L        Y+    SF Q N      +    +   K    D+ ++ YCG G
Sbjct: 259 GEGYIEDTLLGN----TYKISMKSFYQINPRQVEVLYSKAIEYAKFKPTDVVIDAYCGIG 314

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA+H  +V  VE+   ++  A+ N   NH+ N + V   +  F        E   
Sbjct: 315 TISLTLAKHVKKVYGVEVVPQAIVDAKENAERNHITNAEFVCDDAGHFMTEFVERNE--- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STT 338
                    +   + VDPPR G     +  +   +   I+YISCN  +  RDL+ L    
Sbjct: 372 ---------KVDCVMVDPPRKGCSTEFLERLTTLSPERIVYISCNVATQARDLTYLVEKG 422

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +    +   D FP+T H+E  +LL +
Sbjct: 423 YKPLNVQPVDMFPHTPHIENILLLSK 448


>gi|302392787|ref|YP_003828607.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM
           5501]
 gi|302204864|gb|ADL13542.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM
           5501]
          Length = 456

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 143/387 (36%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K + ++  +              +    P  YR +A+F +    +
Sbjct: 85  GCQLQHIDYQAQLEYKQEMVKDNIERIGGLSDVDIKPVLGMEHPYFYRNKAQFPVGVKDE 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLF 105
           D+    +   + E +  +  +    LIN +            I +        LLR  + 
Sbjct: 145 DVVTGFYAPGSHEIIDTEECLIQHQLINRVISKAVELVEKHEISIYDEDSHSGLLRHLVV 204

Query: 106 QIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           ++   T+Q+    V           L +        L    +    Q   +    KT   
Sbjct: 205 RVGVCTNQAMLVFVINGQRIPGQQRLAEELMAEIPELVSIQNNINRQKTNVILGAKTYSL 264

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
                + + +     ++ Y+    SF Q N      + + +L  A    +  +++ YCG 
Sbjct: 265 AGESKIIDYIG----SIRYQISAQSFFQVNTLQAKKLYDQILEYADLSGEETVVDAYCGI 320

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+ SL LA+   +V  +E+   +++ A+ N   N+++N        ++    ++      
Sbjct: 321 GSISLYLAQAAKQVYGIEVVSQAIDDAKENAELNNIDNCYFKVGKVRKILPKLKS----- 375

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTT 338
                  +    + I VDPPR G  +  +   +      I+Y+SC P SL RDL  L+  
Sbjct: 376 -------NGLNPEVIVVDPPRKGCHEEVLETFLELKPERIIYVSCKPSSLARDLEQLTAA 428

Query: 339 -HTIERLALFDQFPYTRHMECGVLLVR 364
            + +E +   D FP T H+E    +VR
Sbjct: 429 DYEVEEIQPVDMFPQTYHIEAVAKIVR 455


>gi|223986649|ref|ZP_03636641.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM
           12042]
 gi|223961380|gb|EEF65900.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM
           12042]
          Length = 453

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/378 (22%), Positives = 148/378 (39%), Gaps = 30/378 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGD- 56
              L I + E Q   K  R+          ++++        P +YR + +  +  + D 
Sbjct: 89  GCQLQIMEAELQAEFKRHRVADCFQRIGHLDVEVQPVLSMEFPWNYRNKVQVPVGVNRDG 148

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP---LLRAKLFQIDYLTSQ 113
            +    +   + + +  D     S L N ++  + + I        LR  L +  +   +
Sbjct: 149 KVISGYYRSHSHDIVDFDECCLHSELENQILRSLRSWIEEAGDPAQLRHLLIKHAF---K 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170
           + Q +V LI          E   RL  A    +  I  +       I  DR+ V      
Sbjct: 206 TGQVMVVLIAKSENLKGKDELIERLTAAYPQIRSIILNVNGREDNVILGDREIVLWGSAS 265

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR 229
           +      L ++    SF Q N      +    +  A    +  ++++YCG G   L  AR
Sbjct: 266 IEEELLGLRFQISAKSFYQINPVQTEVLYTKAIELAGLTGEETVIDVYCGTGTIGLSAAR 325

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              RV+ +EI   +VE A+ N   N + N + +   +   T  +   R            
Sbjct: 326 KAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICGDAGVCTAQLLERR------------ 373

Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLAL 346
            +     VDPPR GLD  T+  +V+  P  I+Y+SC+P +L RD ++L    + +E +  
Sbjct: 374 IQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCAVLNERGYGVEVVQP 433

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP T H+E  VL+ +
Sbjct: 434 VDMFPQTTHVETVVLMSK 451


>gi|257898994|ref|ZP_05678647.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com15]
 gi|257836906|gb|EEV61980.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           Com15]
          Length = 460

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 146/390 (37%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L Q +  F+            I   +P HYR +A+F +  +
Sbjct: 84  GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDDPWHYRNKAQFQLRKN 143

Query: 55  GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                    +++  + + + I   +               L+N     +        + R
Sbjct: 144 KQTQKAEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + ++   T +     +T        +A  RE   RL +    +   + Q   +   ++
Sbjct: 204 TIMVRVGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++E++      + +     +F Q N      +  E + A        +++ 
Sbjct: 264 TIHVWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDAQPDETIVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A+    V  ++    ++  A+ N      +N +    ++++       E
Sbjct: 320 YCGVGTIGLSVAKKVKEVRGMDTVPQAIADAKRNAERLGYHNTRYEVGTAEQVLPKWLNE 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                        ++   I VDPPR+GLD+A +  +  +P   ++YISCN  +L RDL  
Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKFPPKKLVYISCNVSTLARDLVH 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           LS    +E L   D FP T   E  V + R
Sbjct: 428 LSKKFNVEYLQSVDMFPQTARCEVVVKMTR 457


>gi|239628824|ref|ZP_04671855.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518970|gb|EEQ58836.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 475

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 91/408 (22%), Positives = 150/408 (36%), Gaps = 55/408 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDR-LRQMML--AFQVPN----LQIFRSEPIHYRMRAEFHIWHD 54
              L    YE+QL  K ++ L  +M    F+         +    P  YR +A+F    +
Sbjct: 79  GCQLQAMSYEEQLRFKENKVLNNLMRIGKFKRDEIKMLPIMGMENPWRYRNKAQFPFGRN 138

Query: 55  GDD-LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRA 102
            D  +    +  +T + +  D  + G      +            +E       + L+R 
Sbjct: 139 KDGEIIAGFYAGRTHDIIGNDDCLLGVEENQEILGIIKGFMKENGLEPYDENAHKGLVRH 198

Query: 103 KLFQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIR-------------LRDALHARK- 146
            L +  + T +    +V         L+D  R+                 L + L   K 
Sbjct: 199 VLIRKGFKTGELMVCLVVNGRTLGGRLEDGLRDSRADSLADNSADRLAGCLVEKLCQVKG 258

Query: 147 -YQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
              I       KT + + ++    Y    +T     + Y+    SF Q N      +   
Sbjct: 259 MTSISYSVNMEKTNVIMGKEVVNLYGPGYITDYIGDVQYQISPLSFYQVNPVQTEKLYGT 318

Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            L  A       + +LYCG G  SL LA+   +V  VEI   ++E AR N A N ++NV+
Sbjct: 319 ALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIPQAIEDARRNAALNGMDNVE 378

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318
                ++E       + +                I VDPPR G D   +  +       +
Sbjct: 379 FFVGKAEEVLPEQYEKNQI-----------HADVIVVDPPRKGCDTVCLDTILKMRPEKV 427

Query: 319 LYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +Y+SC+  +L RDL  L+   + + ++   D FP T H EC V L RK
Sbjct: 428 VYVSCDSATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVELCRK 475


>gi|322387793|ref|ZP_08061401.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141295|gb|EFX36792.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 452

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 154/380 (40%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P  YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGITDIEVADTLGMENPFKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F   + +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFYIQNPVIDQVILALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHHSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q        + ++   +DY+ +
Sbjct: 208 IMVILVTTRPKIFRVEQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRVLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELSEDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N   N + N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVTPEAVENSQKNAELNGITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQKLGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC  LLV++
Sbjct: 432 PVDLFPQTHHVECVSLLVKR 451


>gi|226323498|ref|ZP_03799016.1| hypothetical protein COPCOM_01273 [Coprococcus comes ATCC 27758]
 gi|225208182|gb|EEG90536.1| hypothetical protein COPCOM_01273 [Coprococcus comes ATCC 27758]
          Length = 471

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/394 (20%), Positives = 156/394 (39%), Gaps = 39/394 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQI---------FRSEPIHYRMRAEFHI 51
            G  + +  Y +QL  K  ++R  ++       ++            EP  YR +A+F I
Sbjct: 82  GGCQIQEMDYRKQLEFKNTKVRNNLIRLGSVEEELLDQIMEPIAGMEEPFRYRNKAQFPI 141

Query: 52  WHDG-DDLYHIMFDQQTKERMRI----------DYFMPGSLLINALMIEMMATIRLE--- 97
             D   +L    +  +T + + +          +  +    +++ +  E ++    E   
Sbjct: 142 GVDKEGNLIAGFYAGRTHQIIPVPNRDCVLGVPENKVILDQILDYMREEKISAYDEERHK 201

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGR 154
            L+R  L +  + T +    ++         +   E   ++       +    +   +  
Sbjct: 202 GLVRHVLVRYGFTTKEIMVCLIINGDKLPCSEKLLEKLTKIPGMTSITYNINKEKTNVIM 261

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDL 213
            +K      + Y+ + +      + Y+    SF Q N      +    L  A    +  +
Sbjct: 262 GSKVCPLWGQTYITDYIG----NVKYQISPLSFYQVNPVQTEVLYGTALEYAGLTGKETV 317

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            ++YCG G  SL LA+   +V  VEI   ++E A++N   N + N +     ++E     
Sbjct: 318 WDVYCGIGTISLFLAQKAQKVYGVEIVPQAIEDAKHNAEINEITNAEFFVGKAEEVLP-- 375

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRD 331
             E   +  K+      R   I VDPPR G + + +  MVQ  P  I+Y+SC+  +L RD
Sbjct: 376 --EYYADYAKEHPGEHARADVIVVDPPRKGCERSVLDTMVQMEPERIVYVSCDSATLARD 433

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  L    + I ++   D FP + H+E  VLL R
Sbjct: 434 VKYLRENGYEIRKVKATDMFPMSVHVETVVLLSR 467


>gi|319646952|ref|ZP_08001180.1| YfjO protein [Bacillus sp. BT1B_CT2]
 gi|317391011|gb|EFV71810.1| YfjO protein [Bacillus sp. BT1B_CT2]
          Length = 463

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 146/387 (37%), Gaps = 36/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIW-H 53
              L    YE+QL  K D + Q +      +         I    P HYR +++F +   
Sbjct: 90  GCQLQHLAYEEQLKGKRDIVIQSLERHTRFDIGKMDIRPTIGMENPWHYRNKSQFQLGLS 149

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDY 109
               +   ++   +   + I   +      N     +   +    +     R +   +  
Sbjct: 150 KNGKMVAGLYGLDSHRLVPITECIVQHPATNKTTQTVKQVLEDFGISVYNERKRTGDVRT 209

Query: 110 LTS----QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           + +    ++ +  V L+  +         A  ++  L      IQ + +A KT +    D
Sbjct: 210 IVTRVGFETGEVQVVLVTSKEDLPRKELIAEEIKKRLPEVTSVIQNVNKA-KTSVVFGDD 268

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220
                 +  +      + +     +F Q N    V + + V  AA    +  +++ YCG 
Sbjct: 269 TRLLAGNMVIQEFLGEVSFELSARAFFQLNPIQTVKLYDEVKKAAKLTGREKVVDAYCGV 328

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + +A     +  +++ K S++ A  N   + + N + V  +++ +     +E    
Sbjct: 329 GTIGMWIADGAKEIRGMDVIKESIDDANQNAKKHGIENARYVTGTAEHWLPKWTKE---- 384

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                    +R   + VDPPR+G D   +  ++       +Y+SCNP +L +DL  L+  
Sbjct: 385 --------GFRPDVVIVDPPRTGCDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKD 436

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP T H+E  V L  K
Sbjct: 437 YHVEYIQPVDMFPQTAHVESVVSLKLK 463


>gi|52079266|ref|YP_078057.1| tRNA (uracil-5-)-methyltransferase [Bacillus licheniformis ATCC
           14580]
 gi|52002477|gb|AAU22419.1| tRNA (uracil-5-)-methyltransferase [Bacillus licheniformis ATCC
           14580]
          Length = 463

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 146/387 (37%), Gaps = 36/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIW-H 53
              L    YE+QL  K D + Q +      +         I    P HYR +++F +   
Sbjct: 90  GCQLQHLAYEEQLKGKRDIVIQSLERHTRFDIGKMDIRPTIGMENPWHYRNKSQFQLGLS 149

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDY 109
               +   ++   +   + I   +      N     +   +    +     R +   +  
Sbjct: 150 KNGKMVAGLYGLDSHRLVPITECIVQHPATNKTTQTVKQVLEDFGISVYNERKRTGDVRT 209

Query: 110 LTS----QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           + +    ++ +  V L+  +         A  ++  L      IQ + +A KT +    D
Sbjct: 210 IVTRVGFETGEVQVVLVTSKEDLPRKELIAEEIKKRLPEVTSVIQNVNKA-KTSVVFGDD 268

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220
                 +  +      + +     +F Q N    V + + V  AA    +  +++ YCG 
Sbjct: 269 TRLLAGNMVIQEFLGEVSFELSARAFFQLNPIQTVKLYDEVKKAAKLTGREKVVDAYCGV 328

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + +A     +  +++ K S++ A  N   + + N + V  +++ +     +E    
Sbjct: 329 GTIGMWIADGAKEIRGMDVIKESIDDANQNAKKHGIENARYVTGTAEHWLPKWTKE---- 384

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                    +R   + VDPPR+G D   +  ++       +Y+SCNP +L +DL  L+  
Sbjct: 385 --------GFRPDVVIVDPPRTGCDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKD 436

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP T H+E  V L  K
Sbjct: 437 YHVEYIQPVDMFPQTAHVESVVSLKLK 463


>gi|257885254|ref|ZP_05664907.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,501]
 gi|257821106|gb|EEV48240.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
           1,231,501]
          Length = 460

 Score =  271 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 148/390 (37%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L Q +  F+            I   EP HYR +A+F +  +
Sbjct: 84  GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143

Query: 55  GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                +   +++  + + + I   +               L+N     +        + R
Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + +I   T +     +T        +A  RE   RL +    +   + Q   +   ++
Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++E++      + +     +F Q N      +  E + A        +++ 
Sbjct: 264 TIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETIVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G   L +A+    V  ++    ++  A+ N+     +N +    ++++       E
Sbjct: 320 YCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKKNVERLGYHNTRYEVGTAEQVLPKWLNE 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                        ++   I VDPPR+GLD+A +  +  YP   ++YISCN  +L RDL  
Sbjct: 380 ------------GFQPDGIIVDPPRTGLDNALIQSLLKYPPKKLVYISCNVSTLARDLVN 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           LS    IE L   D FP T   E  V + R
Sbjct: 428 LSKKFKIEYLQSVDMFPQTARCEVVVKMTR 457


>gi|253575073|ref|ZP_04852412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845529|gb|EES73538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 333

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 132/349 (37%), Gaps = 41/349 (11%)

Query: 37  RSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINA 85
            + P  YR +A+  +      L    + + +   + ++  +               +   
Sbjct: 1   MAAPWRYRNKAQVPVGVIDGALVGGFYARGSHRIIDMETCLIQHESNDDVISRVKAIGRR 60

Query: 86  LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
           L I        + LLR  + ++ + T +    +VT       +D W      +R+ L A 
Sbjct: 61  LGITAYDEETGQGLLRHVVVKVGFRTGEMMLVLVTNGDRIPREDEW---IAAIREELPAV 117

Query: 146 KYQIQLIG-------RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
               Q +          + T++   R    E +      + +     SF Q N      +
Sbjct: 118 VSICQNVNTRQTNVIFGDVTRVLWGR----EVIYDYIGDVKFAISARSFYQVNPIQTEVL 173

Query: 199 L-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
             + V  A    Q  +++ YCG G  SL LA+H  RV  VEI K ++E AR N   N +N
Sbjct: 174 YGKTVEYAGLTGQETVIDAYCGIGTISLFLAQHAKRVYGVEIVKEAIEDARVNAKLNGMN 233

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316
           +V     +S++   A +                    I VDPPR G D   +  +     
Sbjct: 234 HVTFEVGASEDVIPAWKE------------QGIEADVIVVDPPRKGCDPHLLDTIIKMKP 281

Query: 317 -HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
             ++Y+SCNP +L RDL IL    +    +   D FP+T H+E    L 
Sbjct: 282 ERVVYVSCNPATLARDLRILEDGGYRTVEVTPVDMFPHTVHVEAVCFLK 330


>gi|52784631|ref|YP_090460.1| YfjO [Bacillus licheniformis ATCC 14580]
 gi|52347133|gb|AAU39767.1| YfjO [Bacillus licheniformis ATCC 14580]
          Length = 468

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 146/387 (37%), Gaps = 36/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIW-H 53
              L    YE+QL  K D + Q +      +         I    P HYR +++F +   
Sbjct: 95  GCQLQHLAYEEQLKGKRDIVIQSLERHTRFDIGKMDIRPTIGMENPWHYRNKSQFQLGLS 154

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDY 109
               +   ++   +   + I   +      N     +   +    +     R +   +  
Sbjct: 155 KNGKMVAGLYGLDSHRLVPITECIVQHPATNKTTQTVKQVLEDFGISVYNERKRTGDVRT 214

Query: 110 LTS----QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           + +    ++ +  V L+  +         A  ++  L      IQ + +A KT +    D
Sbjct: 215 IVTRVGFETGEVQVVLVTSKEDLPRKELIAEEIKKRLPEVTSVIQNVNKA-KTSVVFGDD 273

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220
                 +  +      + +     +F Q N    V + + V  AA    +  +++ YCG 
Sbjct: 274 TRLLAGNMVIQEFLGEVSFELSARAFFQLNPIQTVKLYDEVKKAAKLTGREKVVDAYCGV 333

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + +A     +  +++ K S++ A  N   + + N + V  +++ +     +E    
Sbjct: 334 GTIGMWIADGAKEIRGMDVIKESIDDANQNAKKHGIENARYVTGTAEHWLPKWTKE---- 389

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                    +R   + VDPPR+G D   +  ++       +Y+SCNP +L +DL  L+  
Sbjct: 390 --------GFRPDVVIVDPPRTGCDRTFLDTIRQVKPKRFVYVSCNPSTLAKDLQYLAKD 441

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP T H+E  V L  K
Sbjct: 442 YHVEYIQPVDMFPQTAHVESVVSLKLK 468


>gi|167750213|ref|ZP_02422340.1| hypothetical protein EUBSIR_01187 [Eubacterium siraeum DSM 15702]
 gi|167656775|gb|EDS00905.1| hypothetical protein EUBSIR_01187 [Eubacterium siraeum DSM 15702]
          Length = 383

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 153/387 (39%), Gaps = 42/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60
              L    YEQQL  K     +++ +F   +  I   +P +YR + +     D    +  
Sbjct: 14  GCQLSNMTYEQQLEWKQKDTEKLLGSFGKVSEIIGADDPYNYRNKVQAVFRSDRNGRIIS 73

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPL--------LRAKLFQIDY 109
            ++       + ID  M      + +++   +++ + +L P         LR  L ++  
Sbjct: 74  GVYQSSRNGIVGIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTERGFLRHVLVRVGK 133

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH-------ARKYQIQLIGRANKTKICL 162
            T    + +VTL+    +     +    L            +     +++      ++  
Sbjct: 134 NTG---EILVTLVGGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEMLLLGENNEVLY 190

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
              Y+ + L        +R   +SF Q N      + ++ + A K  + D+L + Y G G
Sbjct: 191 GEGYITDILCGK----RFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIG 246

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFN 280
              ++ + +  +V  +E    +V  A  N   N +  N+   R  + EF           
Sbjct: 247 TIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEF----------- 295

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338
            L+        +  + +DP R+G D   +  +   A   I+YISCNP +  RDL  L+  
Sbjct: 296 -LEKKAKLGTHYDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKK 354

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +T+  +  FD FP+TRH+EC V + RK
Sbjct: 355 YTVTDIQPFDMFPHTRHVECVVSMSRK 381


>gi|322391885|ref|ZP_08065350.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321145365|gb|EFX40761.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 451

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 157/380 (41%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      +    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGIMDIEVADTLGMENPVQYRNKAQVPVRRVNGQVETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + +
Sbjct: 148 KNSHDLMPLEDFYIQDPVIDQVIVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHHSGE 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q        + ++   +DY+ +
Sbjct: 208 IMVILVTTRPKIFRVEQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRVLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGN----SFQISGPAFYQVNTEMAEKLYQTAIDFAELSEEDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N + N + N   V  S++            N +     +
Sbjct: 324 KHVKDVYGVEVIPEAVENSQKNASINGITNAHYVADSAE------------NAMTKWSKN 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +   V   P  I Y+SCNP ++ RD+ +     + ++++ 
Sbjct: 372 GIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+E   LLV++
Sbjct: 432 PVDLFPQTHHVEAVSLLVKE 451


>gi|257467028|ref|ZP_05631339.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315918165|ref|ZP_07914405.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692040|gb|EFS28875.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 456

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 162/390 (41%), Gaps = 34/390 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   ++++M      N       I   E  HYR +          
Sbjct: 80  GCDFAMAKYEAQLQYKTAMVKEVMERIGKLNSNLVLDCIASPEEKHYRNKVIEPFSKHKG 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDY 109
            +    F +++ E   ++  M  S L N ++            ++  E   +  L  I  
Sbjct: 140 KIITGFFQRRSHEVFEVEENMLNSKLGNKIIETFKQYANQEKLSVYDEKKHQGLLRNIMI 199

Query: 110 LTSQSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ S +A++ LI   + ++++ ++  +++   +   K  I L     KT + L      
Sbjct: 200 RTNSSQEAMLVLIVNAKKIEESLKKILLQMPKNIPELK-SIYLSLNTRKTNVVLGDKNIC 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
            + ++ L      + +     SF Q N     H+ E  L+    I+  ++++ Y G G  
Sbjct: 259 IWGEKTLKEELFGIHFHISPTSFFQINVPQTKHLYEKALSLIPKIENKNVVDAYSGTGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            ++L+R   +V A+EI + +          NH++N++ +    +          E +RL 
Sbjct: 319 GMLLSRKAKKVYAIEIVESASRDGAKTAKENHIDNIEFICGPVE---------VELDRLL 369

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
           +          I  DPPR G++ + +  V     P ++YISCNP +L RDL I++   + 
Sbjct: 370 E---EGKNLDAIVFDPPRKGIEKSILRKVAEVGIPEMVYISCNPSTLARDLKIMAECGYQ 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           +  +  FD FP T H+E  VL+ R P   H
Sbjct: 427 VGEIQPFDMFPQTSHVESVVLMSRNPEEKH 456


>gi|254826049|ref|ZP_05231050.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
 gi|293595289|gb|EFG03050.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
          Length = 459

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 141/390 (36%), Gaps = 40/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 84  GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 143

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + +  +  +               L+    + +        ++R 
Sbjct: 144 GSGQVETGLFGANSHQLVPFEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 204 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 260

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 261 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++       E  
Sbjct: 321 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE-- 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 379 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 428

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + I  +   D FP T H+E  VLL  K 
Sbjct: 429 KKYRIRYMHPVDMFPQTAHVETVVLLQLKD 458


>gi|217967096|ref|YP_002352602.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724]
 gi|217336195|gb|ACK41988.1| RNA methyltransferase, TrmA family [Dictyoglomus turgidum DSM 6724]
          Length = 448

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/384 (18%), Positives = 132/384 (34%), Gaps = 37/384 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L+   Y  QL  K   +            +I        P  YR +A+  +      
Sbjct: 80  GCHLMHVNYGYQLELKRMIVEDAFKRIGKIEKEISPVIGMENPYRYRNKAKIPVGKRRGK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +    +   T   + I   +                I    IE+   ++   LLR  + +
Sbjct: 140 VVLGFYKPNTHHIVDISGCIVQHEDADKVIETTKEAIKKFHIEVYNELQHTGLLRFVVVR 199

Query: 107 IDYLTSQSDQAIV---TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             +        +V    +   + +   +R     L+        +        ++++   
Sbjct: 200 RSFAFDDLMVVLVSKGMIDNAKKIARFYRYRLKNLKSFYININPKRTNEIFGEESRLIWG 259

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
               +E +       I+     SF Q N+     +    L         + + YCG G  
Sbjct: 260 ----EEVIRDKIGEFIFEISPVSFFQINSIQTEKLYNKALEYLSPNSKLVFDAYCGIGTI 315

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL L++  ++V  +E+ + ++E A  N   N V NV+ +   S+E    +  +       
Sbjct: 316 SLFLSKKAEKVYGIEVERSAIEDAWKNARINKVKNVEFIWGRSEEVIPRLIED------- 368

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340
                      I +DPPR G D   +  +       I+YISC P +L RD++IL    + 
Sbjct: 369 -----GKIPDAIVLDPPRKGCDQNLLEAIIRAKVKQIIYISCYPSTLARDVNILVDAGYN 423

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +  +   D FP T H+E   LL +
Sbjct: 424 LVNIQPVDMFPQTFHVENIALLEK 447


>gi|332359419|gb|EGJ37239.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 469

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 153/384 (39%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +      +       +   +P+ YR +A+  +      L 
Sbjct: 96  LGHLNYPAQLDFKRKQVKDSLYKIAGVSDVEVPPTLGMEQPLGYRNKAQVPVRRVNGQLE 155

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++   +++    L+P        L+R  + +  
Sbjct: 156 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRDLLRRFDLKPYDEQEKTGLIRNLVVRRG 215

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 216 HYSGEIMVIMVTTRPKIFRVEQLMERLTETFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +  ++    D +++ Y G G  
Sbjct: 276 DYITDQMLGND----FQIAAPAFYQVNTEMAEKLYQTAIDFSELTADDMVIDAYSGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +V  +E+   +VE +R N   N + N   V   ++E  Q   +E       
Sbjct: 332 GLSVAKHVKQVYGMEVIPEAVENSRKNAEINGIANASYVCAPAEEAIQNWLKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +        P I YISCN  ++ RD+ +     + 
Sbjct: 385 -----GIQADVILVDPPRKGLTESFIKASVSMEPPKITYISCNVATMARDIKLYQELGYE 439

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E    LVR
Sbjct: 440 LKKVQPVDLFPQTHHVEAVSQLVR 463


>gi|160933694|ref|ZP_02081082.1| hypothetical protein CLOLEP_02555 [Clostridium leptum DSM 753]
 gi|156867571|gb|EDO60943.1| hypothetical protein CLOLEP_02555 [Clostridium leptum DSM 753]
          Length = 371

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 146/379 (38%), Gaps = 40/379 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDLYHIMFDQQ 66
            Y +QL  K  R+  ++  F      I    P HYR +  A F +      +   ++   
Sbjct: 2   DYARQLQFKQRRVEGLLKQFHSVEPIIGMETPYHYRNKVSAAFALAR-NQQIISGVYQDS 60

Query: 67  TKERMRIDYFMPGSLLINALMIEMM-----------ATIRLEPLLRAKLFQIDYLTSQSD 115
           T   + +D+ +      + ++  +              +  +  LR  L +  + T+Q  
Sbjct: 61  THRIVPVDHCLIEDPKADEIICSIRRLMKSFKLLPYDEVTQKGFLRHVLIKRGFATNQIM 120

Query: 116 QAIVTLIY----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
             +VT        +   +A  +    +   L     +   +    + K+      + + L
Sbjct: 121 VVLVTATPVFPAKKRFTEALLKLHPEITTILMNLNDRYTSMVLGEQEKVLYGPGKIQDIL 180

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230
                   ++    SF Q N      +    +  A       +++ YCG G   LV A+ 
Sbjct: 181 C----GCRFQISAKSFYQINPAQTEALYLKAMEYAGLTGSETVIDAYCGIGTIGLVAAKR 236

Query: 231 -FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ VE+ + +V+ A  N   N ++N       + EF   M  E+E           
Sbjct: 237 GAKKVVGVELNRDAVKDAIENAKLNKLSNAWFCAGDAGEFMLEMSLEKEP---------- 286

Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS--TTHTIERLA 345
                +F+DPPR+G D   +  ++   P  ++YISCNP++  RDL  L+    + + R+ 
Sbjct: 287 --ADVVFMDPPRAGSDRTFLSSLIALSPQKVVYISCNPETQQRDLRYLTSKGPYRVTRIQ 344

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP+T H+E   LL +
Sbjct: 345 PVDMFPHTNHVETVALLEK 363


>gi|313884344|ref|ZP_07818106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620422|gb|EFR31849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 456

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 142/385 (36%), Gaps = 40/385 (10%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           TL    Y  QLA K   +++                +    P  YR +A+  +      L
Sbjct: 86  TLQHLSYPGQLAFKQKLVQEDFARIGHFTDITVQETLAAPNPWGYRNKAQVPLRQVKGQL 145

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQI 107
               F + + + + I+ F     +I+ +++ +   +R            + LLR  + + 
Sbjct: 146 ETGFFRRLSHDLVPIENFHIQDPVIDQIILMVRDILRDFNLSAYDEKSGKGLLRHLVVKR 205

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLD 163
            + + Q    +V         +   E  +     L   +              + K+   
Sbjct: 206 GHYSGQVMIILVVNGDKLPKQEQVVEKIVAQVPGLVSLILNINRSKGNAILGRQEKVLWG 265

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           +    +++      L +     SF Q N      +    LAA      + +L+ YCG G 
Sbjct: 266 QATYHDQML----GLDFEISGQSFYQVNTPQAEELYRLALAAADLHGHERVLDAYCGIGT 321

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V A+EI   ++E A++N  AN + NV      ++      +        
Sbjct: 322 ISLALAQQAKEVYAMEIVPQAIEMAKFNAQANALTNVHFEAGKAEVILPKWQE------- 374

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-TH 339
                    F    VDPPR GLD   V  +       I+Y+SCNP +  RD +I +   +
Sbjct: 375 -----QGLDFDVAVVDPPRKGLDRTFVDTLIDLNPGKIVYVSCNPATCARDCAIFAEAGY 429

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            ++ +   D FP T H+E  VL+ R
Sbjct: 430 EVKTIKPVDMFPQTVHVEALVLMTR 454


>gi|312867756|ref|ZP_07727962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parasanguinis F0405]
 gi|311096819|gb|EFQ55057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parasanguinis F0405]
          Length = 452

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 156/380 (41%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      +    F 
Sbjct: 88  YPEQLKFKAKQVKDSLYKMAGISDIEVPLTLGMDHPVQYRNKAQVPVRRVNGQVETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M I+ F     +I+ +++ +   IR              L+R  + +  + + +
Sbjct: 148 KNSHDLMPIEDFYIQDPVIDQVILALRDLIRRFDLKPYDEKEQSGLIRNLVVRRGHHSGE 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    ++  +     Q        + ++   +DY+ +
Sbjct: 208 IMVILVTTRPKVFRVDQLIEQLIKQFPAIKSVMQNINDQNTNAIFGKEWRVLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGN----SFQISGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N + N + N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC  LLV++
Sbjct: 432 PVDLFPQTHHVECVSLLVKR 451


>gi|328473948|gb|EGF44764.1| RNA methyltransferase [Listeria monocytogenes 220]
          Length = 458

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 140/389 (35%), Gaps = 39/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEPIHYRMRAEFHIWHDG 55
              L    Y  QL  K   L      ++           I   +P  YR +++F     G
Sbjct: 84  GCQLQHVAYSAQLELKEILLFNQSKTYKNRSNQIKIRPTIGMEDPWRYRNKSQFQTRMVG 143

Query: 56  DDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
                  +F   + + + I+  +               L+    + +        ++R  
Sbjct: 144 SGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRTI 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  D
Sbjct: 204 VVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGD 260

Query: 164 RDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
             ++    E +      L +     +F Q N      + + V  A      + L++ YCG
Sbjct: 261 ETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCG 320

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G      A     V  ++I   S+E A+ N   N + NV      +++       E   
Sbjct: 321 VGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNE--- 377

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                     +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+ 
Sbjct: 378 ---------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAK 428

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + I  +   D FP T H+E  VLL  K 
Sbjct: 429 KYRIRYMQPVDMFPQTAHVETVVLLQLKD 457


>gi|56808950|ref|ZP_00366657.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus pyogenes
           M49 591]
          Length = 436

 Score =  270 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 66  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 125

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 126 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 185

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L +   E        +                ++T+I  
Sbjct: 186 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 245

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 246 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 301

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  A   +N       +++      +      
Sbjct: 302 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 355

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 356 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 409

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 410 DVHYIQSVDMFPHTARTEAVVKLQKR 435


>gi|291556144|emb|CBL33261.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
           V10Sc8a]
          Length = 474

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 152/386 (39%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60
              L    YEQQL  K     +++ +F   +  I   +P +YR + +     D    +  
Sbjct: 14  GCQLSNMTYEQQLEWKQKDTEKLLGSFGKVSEIIGADDPYNYRNKVQAVFRSDRNGRIIS 73

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPL--------LRAKLFQIDY 109
            ++       + ID  M      + +++   +++ + +L P         LR  L ++  
Sbjct: 74  GVYQSSRNGIVGIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTERGFLRHVLVRVGK 133

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH-------ARKYQIQLIGRANKTKICL 162
            T    + +VTL+    +     +    L            +     +++      ++  
Sbjct: 134 NTG---EILVTLVGGNSMFPKKHDFVKALVKQFPDITTVTFSVNRTPEMLLLGENNEVLY 190

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
              Y+ + L        +R   +SF Q N      + ++ + A K  + D+L + Y G G
Sbjct: 191 GEGYITDILCGK----RFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIG 246

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFN 280
              ++ + +  +V  +E    +V  A  N   N +  N+   R  + EF           
Sbjct: 247 TIGIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEF----------- 295

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338
            L+        +  + +DP R+G D   +  +   A   I+YISCNP +  RDL  L+  
Sbjct: 296 -LEKKAKLGTHYDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKK 354

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +T+  +  FD FP+TRH+E  VLL +
Sbjct: 355 YTVTDIQPFDMFPHTRHVETVVLLSK 380


>gi|313892229|ref|ZP_07825822.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
           microaerophilus UPII 345-E]
 gi|313119367|gb|EFR42566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
           microaerophilus UPII 345-E]
          Length = 545

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 143/392 (36%), Gaps = 41/392 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDD 57
             +    YE QL  K +R++ ++      +       +  +  + YR +    I      
Sbjct: 83  CQIPELSYEGQLKFKFNRVKSVISRIGKQDENKVLPVVSATHIVGYRNKMSIPIGTQNGK 142

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                +   T E +     M  +             IN   I +      +  +R  + +
Sbjct: 143 AVSGYYKSGTHEIIPSTDCMIQNETNNKLAKFAQDFINKNKITVYNEKTHKGSVRHIVGR 202

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--- 163
           I     +    IVT        + W E   +    + +  + +Q      KT + L    
Sbjct: 203 IGD-GGKLMAVIVTSTNELPCKEKWIEEMRKSVPEVISIYHNVQD----KKTNVILGNKM 257

Query: 164 -RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
              + ++ L  +   L +     SF Q N      + E  L        + +++ YCG G
Sbjct: 258 EHIWGEKTLKASIGKLTFEISPYSFFQVNKEQAEKLYEKALDFANLFGDETVIDAYCGTG 317

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA+    V+ +EI K ++E A+ N   N + NV+       ++            
Sbjct: 318 TISLYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAKY------------ 365

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TT 338
           L ++     + + + +DP R+G D+  +  +       I+Y+SCN  +  RD+  LS   
Sbjct: 366 LPELAKKGIKAEVMVLDPVRAGCDEKVIEAIGKINPERIVYVSCNVATQARDIERLSKKG 425

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           + + ++   D FP T H+E   LL +     H
Sbjct: 426 YKLIKIQPIDMFPQTTHVETVALLYKLDVDKH 457


>gi|21910835|ref|NP_665103.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28895474|ref|NP_801824.1| RNA methyltransferase [Streptococcus pyogenes SSI-1]
 gi|50401596|sp|Q8K6K7|Y1299_STRP3 RecName: Full=Uncharacterized RNA methyltransferase
           SpyM3_1299/SPs0562
 gi|21905040|gb|AAM79906.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS315]
 gi|28810720|dbj|BAC63657.1| putative RNA methyltransferase [Streptococcus pyogenes SSI-1]
          Length = 451

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L +   E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  A   +N       +++      +      
Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|209559750|ref|YP_002286222.1| RNA methyltransferase, TrmA family [Streptococcus pyogenes NZ131]
 gi|209540951|gb|ACI61527.1| RNA methyltransferase, TrmA family [Streptococcus pyogenes NZ131]
          Length = 451

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L +   E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  A   +N       +++      +      
Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|125718271|ref|YP_001035404.1| RNA methyltransferase [Streptococcus sanguinis SK36]
 gi|125498188|gb|ABN44854.1| RNA methyltransferase, putative [Streptococcus sanguinis SK36]
          Length = 456

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 152/384 (39%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K  +++  +              +    P+ YR +A+  +      L 
Sbjct: 83  LGHLNYPAQLDFKRKQVKDSLYKIAGLSDVEVAPTLGMEHPLGYRNKAQVPVRRVNGQLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQID 108
              F + + + + I+ F     +I+ +++    ++    L+P        L+R  + +  
Sbjct: 143 TGFFRKNSHDLLPIEDFYIQDPVIDQVILFTRNLLRRFDLKPYDEQEKTGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + +    +VT    +     L +   E    ++  +     Q          +    +
Sbjct: 203 HYSGEIMVILVTTRPKIFRVEQLMECLTEAFPAIKSIMQNINDQPGNAIFGKDWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           +Y+ +++        ++    +F Q N  +   + +  +  ++    D+ L+ Y G G  
Sbjct: 263 NYITDQMLGND----FQIAAPAFYQINTEMAEKLYQTAIDFSELTADDVVLDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+   +V  VE+   +VE +R N A N + N   V   ++E  Q   +E       
Sbjct: 319 GLSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYVCAPAEEAIQNWLKE------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +   V   P  I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++++   D FP T H+E   LLVR
Sbjct: 427 LKKVQPVDLFPQTHHVEAVSLLVR 450


>gi|94990944|ref|YP_599044.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10270]
 gi|94544452|gb|ABF34500.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10270]
          Length = 451

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L +   E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  A   +N       +++      +      
Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|296111690|ref|YP_003622072.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295833222|gb|ADG41103.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 464

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 146/376 (38%), Gaps = 33/376 (8%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +Y+ QLA K  ++ QM     VP      I  ++P  YR +A+  +      L    + +
Sbjct: 99  KYDAQLAFKQHQIEQMFKKVNVPVEVKPTIGMADPTKYRNKAQVPVQLINGRLETGFYRR 158

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQ-SDQA 117
            + + + ++ F      ++  +      +         E   +  +  I       S + 
Sbjct: 159 GSHKLVPVEDFYIQDPKVDEAVTVTRDILRDLGLSAYDEETNKGVVRHIMARRGYYSHEL 218

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTV 173
           +V +I +       +E A RL+  L   K  I  I   + T + + +     + ++ +  
Sbjct: 219 MVVIITNTKKLPEEQEIATRLQAKLPELKSFIHNINN-HDTNVIMGQWNETVWGEDEIHD 277

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFD 232
                 +    NSF Q N      +       A       +++ Y G G  +L +A    
Sbjct: 278 QLMGKDFVIGPNSFYQVNPQTTATLYTLAAEKAGLKKTDTVVDAYSGIGTITLSIADKVK 337

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           ++  VE+ + +VE A  N   NH++NV+ V   + E       +              + 
Sbjct: 338 KIYGVEVVENAVEDAEKNAKNNHIDNVEFVTADAPEQMVKWAED------------GLKP 385

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDL-SILSTTHTIE-RLALFD 348
             +FVDPPR GL    +  V A      +YISCNP +L RD   IL+    I+  +   D
Sbjct: 386 NVVFVDPPRKGLTSELISAVSAMKPETFVYISCNPATLARDAVQILAEGFEIDGAVQPLD 445

Query: 349 QFPYTRHMECGVLLVR 364
           QFP T H+E   +  R
Sbjct: 446 QFPQTTHVESVTVFKR 461


>gi|322389307|ref|ZP_08062867.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 903]
 gi|321144051|gb|EFX39469.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 903]
          Length = 452

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 153/379 (40%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +            L +    P+ YR +A+  +      +    F 
Sbjct: 88  YPEQLKFKAKQVKDSLYKMAGISDIDVPLTLGMDHPVQYRNKAQVPVRRVNGQVETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M I+ F     +I+ +++ +   IR              L+R  + +  + + +
Sbjct: 148 KNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPYDEQEQSGLIRNLVVRRGHHSGE 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    ++  +     Q        + ++   +DY+ +
Sbjct: 208 IMVILVTTRPKVFRVDQLIEQLIKQFPAIKSVMQNINDQNTNAIFGKEWRVLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGN----SFQISGPAFYQVNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N A N++ N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 432 PVDLFPQTHHVECVSLLVK 450


>gi|24379246|ref|NP_721201.1| putative RNA methyltransferase [Streptococcus mutans UA159]
 gi|50401575|sp|Q8DUV4|Y788_STRMU RecName: Full=Uncharacterized RNA methyltransferase SMU_788
 gi|24377161|gb|AAN58507.1|AE014920_5 putative RNA methyltransferase [Streptococcus mutans UA159]
          Length = 451

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 146/379 (38%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y QQL  K  ++   +     + ++++        P  YR +A+  +      L    F 
Sbjct: 88  YGQQLNFKRKQVINSLSKIAGISDIEVADTLGMDNPTAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + +   M I+ +      I+ L     +++    L+P        L+R  + +  + T Q
Sbjct: 148 KNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               +VT        +   E   ++     A K  IQ I     T      +    Y ++
Sbjct: 208 IMLVLVTTRSKIFRIEQMIE---KIISEFPAVKSIIQNIND-RNTNAIFGSEFRTLYGED 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +        Y     SF Q N  +   + +  +  +     D +++ Y G G   L  A
Sbjct: 264 TIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A  N A N++ NV  V  S+++   +  +             
Sbjct: 324 KKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYVADSAEKAMASWSK------------R 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +    A     I YISC P ++ RD+ +     + + ++ 
Sbjct: 372 GIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 432 PVDLFPQTHHVECVALLVK 450


>gi|312134353|ref|YP_004001691.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor owensensis
           OL]
 gi|311774404|gb|ADQ03891.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor owensensis
           OL]
          Length = 451

 Score =  269 bits (688), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 154/385 (40%), Gaps = 38/385 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L+  +Y+ QL+ K   +          + +I       +P  YR +    +  D  +
Sbjct: 80  GCHLMHAKYQYQLSLKKLLVEDAFRRIGKLSPRINDVIGMEKPFRYRNKTALPVGGDYKN 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
                + + T + + IDY +               LI    IE+ +  + + +LR  + +
Sbjct: 140 PQIGFYKKMTHDIVDIDYCLIQHEVCDDVIKGMKDLIRKYNIEVYSEKKHQGVLRHIVVR 199

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
             +     ++ ++ L+  + + +        + +     K     +       I  + D 
Sbjct: 200 NSFA---FNEMMIILVCTK-VPENLETIKKDILNKFPKIKSLYVNLNPKRTNVILGEEDI 255

Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           +      +      L +     SF Q N+     +   V+   + I  + + ++Y G G 
Sbjct: 256 LIWGSSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYSQVVKYIRNIDAEIVFDVYSGIGT 315

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            S+ +A    +V A+EI + +VE A+ +   N ++N++ +  S++              +
Sbjct: 316 ISMFVAPFCKKVYAIEIVEDAVEDAKKSSKNNGISNIEFICGSAE------------IEI 363

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339
             +       + + +DPPRSG +   +  +  Q  P+I+Y+SCNP +L RD SIL    +
Sbjct: 364 PKLMKSGIIPQAVILDPPRSGCEKELLESLIKQKIPNIIYVSCNPSTLARDSSILCSNGY 423

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +  +   D FP T H+EC  LL +
Sbjct: 424 EVVEVQPVDMFPQTFHVECVALLKK 448


>gi|326391400|ref|ZP_08212937.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992535|gb|EGD50990.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 450

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 159/394 (40%), Gaps = 52/394 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGDD 57
             T     Y+ QL  K D L+++     +   +   I +S   H YR + E+    D + 
Sbjct: 79  GCTYQNVSYQDQLKIKEDILKKLFEKEGITEYEFLGIVKSPKEHGYRNKMEYTFGKDKEG 138

Query: 58  LYHIMFDQQT---------KERMRIDYFMPGSLLINALMIE----MMATIRLEPLLRAKL 104
              +   ++          K  +  D F+    L     I+           E  LR  +
Sbjct: 139 NAALGLHRKGRFYEVIMTDKCNIVEDDFLKALNLTFDYAIKKALPFYDKKTHEGFLRHLV 198

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR---------LRDALHARKYQIQLIGRA 155
            +     S+S + ++ ++    L   + E   R         L   LH +          
Sbjct: 199 VRK---ASKSGEILLNIVTTTQLQHDFTELIERYKNANFGSRLVGVLHTQNDSWSDAVVC 255

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214
            + ++   RDY+ E +      L ++    SF Q N+     + E V      +    + 
Sbjct: 256 ERLEVLYGRDYLIEEIL----DLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVF 311

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G   +++A    +V+ +E+ + +V +AR N   N + N   +     +      
Sbjct: 312 DLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFIAGDVSK------ 365

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL 332
                 +LK+I         + VDPPRSG++   +  +++  P  ++Y+SCNP+SL RDL
Sbjct: 366 ------KLKEI---KEMPDVVIVDPPRSGINPKALEDIIKFNPQKVVYVSCNPESLARDL 416

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
            I S   + ++++   D FP+T H+E  VL+ RK
Sbjct: 417 KIFSEGGYKVDKVKCVDMFPHTHHVETVVLMERK 450


>gi|332638824|ref|ZP_08417687.1| tRNA (uracil-5-)-methyltransferase related enzyme [Weissella
           cibaria KACC 11862]
          Length = 455

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 154/385 (40%), Gaps = 43/385 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L    Y+ QL  K ++++++    Q  ++++        P  YR +A+        +L  
Sbjct: 88  LAHLNYDAQLRFKQNQIQELFKK-QHVDVEVSETLGMENPTGYRNKAQIPTRELRGELTT 146

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
             F + +   M I+ F      I+  ++ +   +R              ++R  + +  Y
Sbjct: 147 GFFRRGSHNLMPIEDFYIQDPEIDKAIVVIRDILRKYHIPAYNEFEHTGVIRNIMVRRGY 206

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165
            + +    +VT        +        +R+AL   K  IQ + +  KT + L       
Sbjct: 207 YSHEMMVVLVTRSKKVPGAEMIVAD---IREALPEVKSIIQNVNQ-EKTNVILGEKNNTL 262

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223
           +  + +T       +    NSF Q N       L  + A   G+ GD  +++ Y G G  
Sbjct: 263 WGKDVITDTLFGKKFVIGPNSFYQVNP-QTTETLYQLAADKAGLTGDEEVIDAYSGIGTI 321

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL +A     VL VE+   +V+ A+ N   N VNN K     ++E            ++ 
Sbjct: 322 SLTIADRVKSVLGVEVVPGAVDDAKRNADINGVNNAKFELGKAEE------------KMV 369

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHT 340
           +      R   IFVDPPR GL    +           +YISCNP +L RD + IL   + 
Sbjct: 370 EWHEAGMRPDVIFVDPPRKGLTPELIDAATGMEPEKFVYISCNPATLARDTVQILENGYH 429

Query: 341 IER-LALFDQFPYTRHMECGVLLVR 364
           I+  +   DQFP T H+E   + V+
Sbjct: 430 IQGPVQPIDQFPQTTHIESVTVFVK 454


>gi|304385359|ref|ZP_07367704.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
           DSM 20284]
 gi|304328566|gb|EFL95787.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
           DSM 20284]
          Length = 455

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 147/378 (38%), Gaps = 39/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QL  K  +++ ++    +  +++        P  YR +A+  +      L    F +
Sbjct: 93  YPAQLKFKQTQIKNLLQKSHLEQIEVAETVGMENPTGYRNKAQVPVRKVKGQLATGFFKR 152

Query: 66  QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            + + + I+ F     +I+              IE    I    ++R  + +    + + 
Sbjct: 153 GSHDLVPIEDFYIQDPVIDQVILKVRDILREYQIEPYDEINQRGVVRNIMVRRGRRSGEI 212

Query: 115 DQAIVTL---IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
              ++T    + H     A       +   +     +   +    + ++      + + L
Sbjct: 213 MVVLITRTSSVSHLDEIAAAIHQIDGVVSVIQNINPKQTNVIMGKEDRLLAGESVIHDEL 272

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230
                   +    +SF Q N      + +  +  A    +  +L++Y G G  SL +A+ 
Sbjct: 273 L----GQKFIISAHSFYQVNPVQTEKLYQLAIEKAGLTGKETVLDVYSGIGTISLAMAQA 328

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V  VEI K +V+ A+ N   N   NVK V   +++     + E              
Sbjct: 329 AKKVYGVEIVKEAVQDAKVNAVQNQAKNVKFVVGKAEDQMAKWQAE------------GM 376

Query: 291 RFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHTIER-LAL 346
           +   + VDPPR GLD++ +      A   ++Y+SCNP +L RD+    +  + +++ +  
Sbjct: 377 QPDVVVVDPPRKGLDESVINATVAMAPKRVVYVSCNPATLVRDIDRFQAQGYKVDQPITP 436

Query: 347 FDQFPYTRHMECGVLLVR 364
            DQFP T H+E   ++ R
Sbjct: 437 VDQFPQTPHVESVTVMSR 454


>gi|15613460|ref|NP_241763.1| RNA methyltransferase [Bacillus halodurans C-125]
 gi|50401683|sp|Q9KEF5|Y897_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0897
 gi|10173512|dbj|BAB04616.1| RNA methyltransferase [Bacillus halodurans C-125]
          Length = 463

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 147/388 (37%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    YE  L EK + ++Q                  I   +P  YR +++  +  +
Sbjct: 88  GCQLQHLSYEATLKEKREIVKQAFERHTTLRADTLTILPTIGMEDPWAYRNKSQLQLKTE 147

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              +   ++   T + + +   +               ++  L I      +   +LR+ 
Sbjct: 148 KGQVKAGLYVMNTHKLVDLSSCLVQHDATNEASEVVKQIVQDLQIPTYNERKRTGILRSV 207

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++ +   ++ +  V L+  +            ++  L   K   Q I    KT + + 
Sbjct: 208 VSRVGF---ETGELQVILVTTKKDFPKKDLLVEEIKSRLPHVKSLQQNINP-KKTSLIMG 263

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYC 218
            +    + +E +      + +     +F Q N    V +   V  AA    +  +++ YC
Sbjct: 264 DETISLFGEETIEETLGDISFSLSARAFFQLNPKQTVKLYNEVKRAAALTGKEKVIDAYC 323

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +++   ++E A+ N     + NV+     +++   +  R   
Sbjct: 324 GVGTIGLWLADQAREVRGMDVIAEAIEDAKENAKRQGITNVQYEVGKAEKIIPSWVR--- 380

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                     S+    I VDPPR+G DD  +  ++      I+Y+SCNP +L +D+  L 
Sbjct: 381 ---------SSWIPDVIVVDPPRTGCDDQLLKTIKQTKPKRIVYVSCNPSTLAKDVEQLQ 431

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLV 363
              + ++ +   D FP+T  +E   LLV
Sbjct: 432 RSGYKVKNIQPVDMFPWTAQVESCTLLV 459


>gi|256850547|ref|ZP_05555973.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|256712570|gb|EEU27565.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
          Length = 451

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 154/382 (40%), Gaps = 30/382 (7%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    +  +++ +     E   YR +A+  +      L
Sbjct: 82  ASLAHIKYDKQLEFKRNQVVNLLKKAHLDEIEVGQTLPSPEQTGYRNKAQVPVREYNGQL 141

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTS 112
               F + + + + +  F      I+ +++ +   +R       + +    + +   +  
Sbjct: 142 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAPYDEVNNTGIIRYLDVRR 201

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV---D 168
                 + +I    + D  +   +    +   +   + L     KT + L + DY+   +
Sbjct: 202 SKANGEIMVILVSRVKDFPQMMGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGN 261

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVL 227
           +++T     L +R    SF Q N+     + +  +  A  G    +++ Y G G   L +
Sbjct: 262 DQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVVIDAYSGIGTIGLSV 321

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+H   V  +E+ + +++ A+ N   N + N K     ++E      +            
Sbjct: 322 AKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIMPRWAK------------ 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERL 344
              +   +FVDPPR GL    +          ++YISCNP ++ RDL +     +  +R+
Sbjct: 370 KGMKTDVVFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMIRDLLLFQEQGYEFKRI 429

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
              D FP T H+E   +L +K 
Sbjct: 430 DPVDMFPQTPHVEAVTVLTKKK 451


>gi|238925373|ref|YP_002938890.1| RNA methyltransferase [Eubacterium rectale ATCC 33656]
 gi|238877049|gb|ACR76756.1| RNA methyltransferase [Eubacterium rectale ATCC 33656]
          Length = 418

 Score =  269 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 147/374 (39%), Gaps = 34/374 (9%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQT 67
           +Y++QL  K   +++++  F      +    P++YR +            +    + + T
Sbjct: 56  EYKEQLKTKQAYMKKLLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRRGQIVAGAYRKNT 115

Query: 68  KERMRIDYFMP----GSLLINAL-------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            + + I+  M        +I  +        I+         LLR  L +  Y T    Q
Sbjct: 116 HDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYATG---Q 172

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTV 173
            +V L+    +  +       LR         +  +     + +  DR+   Y    +  
Sbjct: 173 IMVVLVLASPILPSKNNFVKALRKKHPNITTVVLNVNDKKTSMVLGDRNITLYGKGFIED 232

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFD 232
                 +R    SF Q N      + E  +  A    +  +++ YCG G   ++ A++  
Sbjct: 233 KLCGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERIIDAYCGTGTIGIIAAKNAG 292

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE+ + ++  A  N   N + N++     + +F   M +               + 
Sbjct: 293 EVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVEMAQ------------KGEKA 340

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             + +DPPR+G D+A +  V   +   ++Y+SC P++L RDL  L+   +T++R   +D 
Sbjct: 341 DVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLARDLKYLTKHGYTVKRATPYDC 400

Query: 350 FPYTRHMECGVLLV 363
           FP+T H+E    L 
Sbjct: 401 FPFTSHIETVCCLT 414


>gi|320547084|ref|ZP_08041380.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
           9812]
 gi|320448210|gb|EFW88957.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
           9812]
          Length = 455

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 149/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  ++   +     + ++++        P  YR +A+  +      L    F 
Sbjct: 88  YSEQLKFKRKQVADNLYKIAGISDVEVAETLGMEHPYAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + M I  F   +  I+ L     +++    L+P        L+R  + +  Y +  
Sbjct: 148 KHSHDLMPISDFYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGYYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++  +  R       +   ++     A K  +Q I   N T      D    Y  +
Sbjct: 207 --EMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKN-TNAIFGNDFRTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +  +     Y     SF Q N  +   + +  +  +     D +++ Y G G   L  A
Sbjct: 264 TIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTADDIVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           ++   V  VE+ + +VE A+ N A N + N   V  S++       +            +
Sbjct: 324 KNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSK------------N 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL +  +   V   P  + YISCNP ++ RD+ +     + ++++ 
Sbjct: 372 GIKPSVILVDPPRKGLTENFIKASVAMQPEKVTYISCNPATMARDIKLYQELGYKLQKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E  VLL +
Sbjct: 432 PVDLFPNTHHVETVVLLSK 450


>gi|332523114|ref|ZP_08399366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314378|gb|EGJ27363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 451

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 139/387 (35%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  FQ    +       I   EP HYR + +F     
Sbjct: 82  GCQIMHLAYPKQLDFKDDVIRQSLKKFQPQGFENFTIKHTIGMVEPWHYRAKLQFQTRSF 141

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
           G  ++  +F + +   + I+  +               L+    I +     +   LR  
Sbjct: 142 GGKVHAGLFAEGSHRLISIENCLVQDSTTQAIINDIVCLLERHRIPIYNERHIAG-LRTV 200

Query: 104 LFQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           + +    + Q     VT   ++   L          ++                 +T+I 
Sbjct: 201 MIRKGQSSGQVQLIFVTSKELHIAPLVKELVANFEEIKTVAINYNRSKTSGLYGERTEII 260

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             +    E +        +     +F Q N      +  E V A        +++ YCG 
Sbjct: 261 WGK----ETINEDVLDYSFALSPRAFYQLNPQQTEVLYSEVVKALEVSENDQIIDAYCGV 316

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+H   +  ++I   ++  A+ N  A    N       +++      +E    
Sbjct: 317 GTIGFAFAKHVKSIRGMDIIPEAIADAKKNAKAMGFTNTYYETGKAEDLIPKWYQE---- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   I VDPPR+GLD+  +  V  Y    ++Y+SCN  +L RDL  L+  
Sbjct: 373 --------GYRADAIIVDPPRTGLDERLLETVVKYQPEKMVYVSCNTSTLARDLVTLAKF 424

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP+T   E  V L +K
Sbjct: 425 YQVEYIQSVDMFPHTARTEAVVKLQKK 451


>gi|320529040|ref|ZP_08030132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas artemidis
           F0399]
 gi|320138670|gb|EFW30560.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas artemidis
           F0399]
          Length = 457

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 128/388 (32%), Gaps = 45/388 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++   M              +  + P +YR + +F +     
Sbjct: 85  GCQLQHLSYEAQLTAKRLQVVDAMTHIGKLPHVPVKETLGAASPWNYRNKMQFPVGIHQG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALM-------IEMMATIRLEPLLRAKLFQIDY 109
            +    F Q +   +  +         NAL         ++   +  E   R  L  I  
Sbjct: 145 QIVVGCFAQGSHRIIDTEDCHIQREGNNALANAVRDIVTKLRIPVYNEDTHRGILRHIVG 204

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTKICL 162
              Q D+ +  ++         ++    +R+ L       Q        +     T +  
Sbjct: 205 RVGQGDELMAVIVTAAKELPRKKKLIRMMRERLPQLVSIQQNIQTYRNNVVMGRDTVLLW 264

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            +  + + L      L +     SF Q N      + E  L  A       +++ YCG G
Sbjct: 265 GKPTIRDTLG----KLSFHISPRSFFQVNTAQAAVLYEQALQYADLHGTETVIDAYCGTG 320

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE----- 276
             +L LA+    V  +EI +P++  AR N   N + N + +   +     ++ R+     
Sbjct: 321 TITLFLAQRARNVYGIEIVRPAILDARKNARDNGIKNAEFIVGDATAVMPSLYRQGVRPD 380

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILS 336
                           K      PR                I+Y+SCNP +L RDL+I+ 
Sbjct: 381 VVVVDPPRAGCTPTVLKNFANMKPR---------------RIVYVSCNPATLARDLAIMK 425

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLV 363
              +    +   D FP T H+EC   + 
Sbjct: 426 DLGYEAREIQPVDLFPQTSHVECVAWMT 453


>gi|262047051|ref|ZP_06020010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus MV-3A-US]
 gi|293381908|ref|ZP_06627876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 214-1]
 gi|312984350|ref|ZP_07791691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus CTV-05]
 gi|260572628|gb|EEX29189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus MV-3A-US]
 gi|290921555|gb|EFD98589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 214-1]
 gi|310894244|gb|EFQ43325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus CTV-05]
          Length = 449

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 154/382 (40%), Gaps = 30/382 (7%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    +  +++ +     E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLKKAHLDEIEVGQTLPSPEQTGYRNKAQVPVREYNGQL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTS 112
               F + + + + +  F      I+ +++ +   +R       + +    + +   +  
Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAPYDEVNNTGIIRYLDVRR 199

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV---D 168
                 + +I    + D  +   +    +   +   + L     KT + L + DY+   +
Sbjct: 200 SKANGEIMVILVSRVKDFPQMMGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGN 259

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVL 227
           +++T     L +R    SF Q N+     + +  +  A  G    +++ Y G G   L +
Sbjct: 260 DQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVVIDAYSGIGTIGLSV 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+H   V  +E+ + +++ A+ N   N + N K     ++E      +            
Sbjct: 320 AKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIMPRWAK------------ 367

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERL 344
              +   +FVDPPR GL    +          ++YISCNP ++ RDL +     +  +R+
Sbjct: 368 KGMKTDVVFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMIRDLLLFQEQGYEFKRI 427

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
              D FP T H+E   +L +K 
Sbjct: 428 DPVDMFPQTPHVEAVTVLTKKK 449


>gi|331003204|ref|ZP_08326711.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330412857|gb|EGG92237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 470

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 152/391 (38%), Gaps = 41/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
             TL    Y  +L  K +++   +      +L        I   EP  YR +++F     
Sbjct: 87  GCTLQSLDYRAELRLKQNKVENHLKRIGRFDLSNVEIEEIIGMEEPYRYRNKSQFPFGRK 146

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAK 103
                   F  +T   +  D  + G              ++   ++         ++R  
Sbjct: 147 NGKNITGYFAGRTHSIVEFDDCIIGIEENKTVLKTVLDFMDKYRVDAYNEEDGSGIIRHV 206

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRE-CAIRLRDALHARKYQIQ----LIGRANKT 158
           L +  + T +    +V    +   +    E     L D L +    I      +   ++T
Sbjct: 207 LIRKGFATGELMVCVVINADNLPHNRELVESLCTVLGDNLKSVSININKKNTNVILGDRT 266

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
                R+Y+++ +      + +R    SF Q N      +    L  A    +  + ++Y
Sbjct: 267 FTIYGREYIEDYIG----DVKFRISPQSFYQVNPVQTKKLYGKALEYAALTGKETVWDMY 322

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  SL LA+    V  VEI   +++ AR N   N++ NVK     ++E       E 
Sbjct: 323 CGIGTISLFLAKSAKFVYGVEIVDAAIQNARENAKLNNIENVKFFVGKAEEIIT---GEY 379

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335
           E   +KDID        I VDPPR GLD   +  +       I+Y+SC+  +L RDL IL
Sbjct: 380 ENGNIKDID-------VIVVDPPRKGLDKLAIDTMLKLLPKRIVYVSCDSSTLARDLKIL 432

Query: 336 STT-HTIERLALFDQFPYTRHMECGVLLVRK 365
               + +++L + DQF  + H E  V++ RK
Sbjct: 433 CEKEYELKKLTVVDQFARSYHTESVVVMERK 463


>gi|227877027|ref|ZP_03995119.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           crispatus JV-V01]
 gi|256844662|ref|ZP_05550147.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
 gi|227863398|gb|EEJ70825.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           crispatus JV-V01]
 gi|256613203|gb|EEU18407.1| RNA methyltransferase [Lactobacillus crispatus 125-2-CHN]
          Length = 449

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 154/382 (40%), Gaps = 30/382 (7%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    +  +++ +     E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLKKAHLDEIEVGQTLPSPEQTGYRNKAQVPVREYNGQL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTS 112
               F + + + + +  F      I+ +++ +   +R       + +    + +   +  
Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAPYDEVNNTGIIRYLDVRR 199

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV---D 168
                 + +I    + D  +   +    +   +   + L     KT + L + DY+   +
Sbjct: 200 SKANGEIMVILVSRVKDFPQMMGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGN 259

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVL 227
           +++T     L +R    SF Q N+     + +  +  A  G    +++ Y G G   L +
Sbjct: 260 DQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVVIDAYSGIGTIGLSV 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+H   V  +E+ + +++ A+ N   N + N K     ++E      +            
Sbjct: 320 AKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIMPRWAK------------ 367

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERL 344
              +   +FVDPPR GL    +          ++YISCNP ++ RDL +     +  +R+
Sbjct: 368 KGMKTDVVFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMIRDLLLFQEQGYEFKRI 427

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
              D FP T H+E   +L +K 
Sbjct: 428 DPVDMFPQTPHVEAVTVLTKKK 449


>gi|329117144|ref|ZP_08245861.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parauberis NCFD 2020]
 gi|326907549|gb|EGE54463.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parauberis NCFD 2020]
          Length = 451

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 146/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    +       +   EP HYR + +F     
Sbjct: 82  GCQIMHLAYPKQLVFKTDVIRQALKKFKPEGYESYPIRETLGMDEPWHYRAKLQFQTRQF 141

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
           G  +   +F + +   + I+  +        ++  ++  +    L          LR  +
Sbjct: 142 GGKIRAGLFAENSHHLVTIENCLVQDKDTQLVINSIVKLLDKHKLPIFNERKIDGLRTVM 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    + +    ++T    RL D   D  +E    +  AL+  K +   I     T+I 
Sbjct: 202 IRKAVASKKIQVILITSKALRLTDFINDLVKEHPQIMTIALNHNKSKSSDI-YGESTEII 260

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGN 220
              D ++E +        +     +F Q N      + + +  A        +++ YCG 
Sbjct: 261 WGEDKIEEEVL----DYQFSLSPRAFYQLNPKQTQVLYQEIKNALQVTATDHIIDAYCGV 316

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A     +  ++I   ++  A+ N     + N       ++E      +     
Sbjct: 317 GTIGFAFANQVASIRGMDIVPEAIADAKQNAQDLAIVNTLYETGKAEEIIPKWYQ----- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+  
Sbjct: 372 -------SGYRADAIIVDPPRTGLDDKLLQTIITYQPEKMVYVSCNTSTLARDLVSLTKV 424

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP+T   E  V L +K
Sbjct: 425 YKVEYIQSVDMFPHTARTEAVVKLTKK 451


>gi|94988943|ref|YP_597044.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94992837|ref|YP_600936.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS2096]
 gi|94542451|gb|ABF32500.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS9429]
 gi|94546345|gb|ABF36392.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS2096]
          Length = 451

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 144/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L     E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  A   +N       +++      +      
Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|317498564|ref|ZP_07956857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894051|gb|EFV16240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 360

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 38/356 (10%)

Query: 32  NLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM 90
              +   EP +YR +A+F + +D   +L    +  +T   +   + M    +   +++++
Sbjct: 19  EPILGMEEPFYYRNKAQFPVGYDKEGNLITGFYAGRTHHIIDCTHCMIQHPVNEQILLKV 78

Query: 91  MATIRLE-----------PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR 139
           +  ++              L+R  + ++ + T +    +V     + L +        L 
Sbjct: 79  LDYMKKNNITAYDEKTHKGLVRHIVTRVGFKTGEIMVCLVVNGSKKNLRNLEM-----LV 133

Query: 140 DALHARK--YQIQLIGRANKTKICLD----RDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
           D+L   +    I +     KT   L       Y    +      + Y+    SF Q N  
Sbjct: 134 DSLTEVEGMTSICVNINKEKTNRILGSKIEEVYGKPYIYDYIGNVKYQIGPLSFFQVNPT 193

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
               + E  +        + + +LYCG G  SL LA+   +V  VEI K +++ AR N  
Sbjct: 194 QTKVLYEKAMEYADLKGEEIVWDLYCGIGTISLFLAQKAKKVYGVEIVKEAIDDARLNAK 253

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N  +N +     ++E      RE E N             TI VDPPR G D   +  +
Sbjct: 254 MNGFDNAEFFVGKAEEVLP---REYEKN--------GVYADTIVVDPPRKGCDSKLLETM 302

Query: 313 --QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
              A   I+Y+SC+P +L RDL +LS   + +E++   DQF ++ H+E  VLL R+
Sbjct: 303 VKMAPKRIVYVSCDPATLARDLKVLSEQGYEVEKVCAVDQFSHSSHVETCVLLQRR 358


>gi|293374357|ref|ZP_06620684.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
           PC909]
 gi|292647020|gb|EFF65003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
           PC909]
          Length = 468

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 143/391 (36%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y +QL  K D + Q +  +   + +       +    P +YR RA+  + +D
Sbjct: 84  GCQLQHMTYPEQLRIKRDAIWQAVERYTNLDPEELDIRPTMGMDNPYNYRNRAQMPVGYD 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----------RAK 103
            D +    +   ++E + +         IN ++   +  +    +            R  
Sbjct: 144 EDGVMVGFYSMNSRELVNVTDCEVQYEEINKVVNHAVDLLDDYKVFAYAPKTKKGTARHI 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI--- 160
           + +  Y T +     VT +            A+ L       K         +  +I   
Sbjct: 204 VVRRGYRTGEIQ---VTFVLANKDFKKMYSLALDLMKYCPEVKSVYVNYNSDDTHEIFGP 260

Query: 161 ----CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLE 215
                   D++ +RL        +     +F Q N    V +   V  AA+      +++
Sbjct: 261 DMIKVAGEDFITDRLG----KFKFNLSPRAFYQLNPEQTVKLYNQVKYAASLTGTEKVVD 316

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G     +A     V  V+I + ++  A+ N   N+++N       ++        
Sbjct: 317 AYCGVGTIGQWVADQASEVRGVDITRAAIIDAKANAKLNNIDNTYYAVGKAESIVPKWAN 376

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
           E             ++   + VDPPR+G+    + M++      I+Y+SCNP +L ++L 
Sbjct: 377 E------------GFKPDVVIVDPPRTGMGPELIEMLKRVQPKRIVYVSCNPSTLAKNLK 424

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            L+  + ++ +   D FP T H+E  V L R
Sbjct: 425 ELTKKYRVDYIQPIDMFPQTSHVEAVVRLTR 455


>gi|295692415|ref|YP_003601025.1| RNA methyltransferase [Lactobacillus crispatus ST1]
 gi|295030521|emb|CBL50000.1| RNA methyltransferase [Lactobacillus crispatus ST1]
          Length = 449

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 154/382 (40%), Gaps = 30/382 (7%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    +  +++ +     E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLKKAHLDEIEVGQTLPSPEQTGYRNKAQVPVREYNGQL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTS 112
               F + + + + +  F      I+ +++ +   +R       + +    + +   +  
Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRKYKIAPYDEVNNTGIIRYLDVRR 199

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV---D 168
                 + +I    + D  +   +    +   +   + L     KT + L + DY+   +
Sbjct: 200 SKANGEIMVILVSRVKDFPQMTGVAAEISQIPKVSGLVLNYNPKKTNVILGKKDYLVFGN 259

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVL 227
           +++T     L +R    SF Q N+     + +  +  A  G    +++ Y G G   L +
Sbjct: 260 DQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKQADLGSDDVVIDAYSGIGTIGLSV 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+H   V  +E+ + +++ A+ N   N + N K     ++E      +            
Sbjct: 320 AKHVKAVRGIEVVRDAIKDAKDNAELNGIENAKYYLGKAEEIMPRWAK------------ 367

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERL 344
              +   +FVDPPR GL    +          ++YISCNP ++ RDL +     +  +R+
Sbjct: 368 KGMKTDVVFVDPPRKGLTPEFINATVKTGPKKVVYISCNPATMIRDLLLFQEQGYEFKRI 427

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
              D FP T H+E   +L +K 
Sbjct: 428 DPVDMFPQTPHVEAVTVLTKKK 449


>gi|15675488|ref|NP_269662.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71911132|ref|YP_282682.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS5005]
 gi|50401662|sp|Q99YP3|Y1606_STRP1 RecName: Full=Uncharacterized RNA methyltransferase
           SPy_1606/M5005_Spy1319
 gi|13622683|gb|AAK34383.1| putative RNA methyltransferase [Streptococcus pyogenes M1 GAS]
 gi|71853914|gb|AAZ51937.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS5005]
          Length = 451

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 145/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L +   E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  A   +N       +++      +      
Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIISKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAVIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|89097300|ref|ZP_01170190.1| hypothetical protein B14911_17015 [Bacillus sp. NRRL B-14911]
 gi|89088123|gb|EAR67234.1| hypothetical protein B14911_17015 [Bacillus sp. NRRL B-14911]
          Length = 460

 Score =  268 bits (686), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 153/386 (39%), Gaps = 35/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L   +Y++QL EK D + Q +       +        I   +P +YR +A F +  +
Sbjct: 87  GCQLQHLRYDRQLQEKRDIVIQALERHTKLPVAGLDIRDTIGMEDPWNYRNKASFQVGQE 146

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINA-------LMIEMMATIRLEPLLRAKLFQI 107
              +   ++   +   + I   +      N        +M ++  ++  E   +  +  I
Sbjct: 147 DGKIIAGLYGLNSHNLINIPQCVVQHPHTNKAIGVVKKVMNKIGISVYNEKTKKGTVRTI 206

Query: 108 DYLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
              T  QS +  + +I          +    +   L   K  +Q I    KT +   ++ 
Sbjct: 207 MARTGIQSGELQIVIITSTKDLPKKEQLITEITKRLPQVKSIMQNIN-GEKTSLIFGKET 265

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNG 221
              + +E +      L +     +F Q N    V +   V  AA+   +  + + YCG G
Sbjct: 266 RHMHGEEYIQETLGDLSFELSARTFFQLNPEQTVKLYNEVKKAASLTGKEKVADAYCGVG 325

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LA     V  ++I   S++ A+ N A N++ + K     ++       +E     
Sbjct: 326 TIGLWLADQAGEVRGMDIIPESIQDAKKNAARNNIKHAKYETGKAEVLLPKWMKE----- 380

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTH 339
                   +R   I VDPPR+GLD A +  +       ++Y+SCNP +L +D+++L   +
Sbjct: 381 -------GWRPDVIVVDPPRTGLDQALLKTILKVKPKKVVYVSCNPSTLAKDIAVLDPEY 433

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E +   D FP T H+E    LV +
Sbjct: 434 RVEYMQPVDMFPQTAHVEVVSELVLR 459


>gi|238854152|ref|ZP_04644499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           202-4]
 gi|238833228|gb|EEQ25518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           202-4]
          Length = 450

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 157/382 (41%), Gaps = 34/382 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + N+++       E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLHKADLDNIKVSQTLPSPEETGYRNKAQVPVREVHGKL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111
               F + + + + +  F      I+ ++I++   +R   +        + ++  +D   
Sbjct: 140 DIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLDVRR 199

Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167
           S+ S + +V L+         ++    + +        + L     KT + L + DY+  
Sbjct: 200 SKASGEIMVILVCLHKEFPQLKKVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDYLLW 257

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
            + ++T     + ++    SF Q N+     + +  +        D+ ++ Y G G   L
Sbjct: 258 GEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+H   V  +E+ KP+V+ A  N   N +NN + V   ++E      +E         
Sbjct: 318 SVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPRWAKE--------- 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342
                +   IFVDPPR GL    +          I+YISCNP ++ RDL +     +   
Sbjct: 369 ---GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVRDLQLFREQGYDFN 425

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +   D FP T H+E   +L R
Sbjct: 426 EIDPVDMFPQTPHVESVTVLER 447


>gi|325841300|ref|ZP_08167401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
 gi|325489981|gb|EGC92328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
          Length = 468

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 143/391 (36%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y +QL  K D + Q +  +   + +       +    P +YR RA+  + +D
Sbjct: 84  GCQLQHMTYPEQLRIKRDAIWQAVERYTNLDPEELDIRPTMGMDNPYNYRNRAQMPVGYD 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----------RAK 103
            D +    +   ++E + +         IN ++   +  +    +            R  
Sbjct: 144 EDGVMVGFYSMNSRELVNVTDCEVQYEEINKVVNHAVDLLDDYKVFAYAPKTKKGTARHI 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI--- 160
           + +  Y T +     VT +            A+ L       K         +  +I   
Sbjct: 204 VVRRGYRTGEIQ---VTFVLANKDFKKMYSLALDLMKYCPEVKSVYVNYNSDDTHEIFGP 260

Query: 161 ----CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLE 215
                   D++ +RL        +     +F Q N    V +   V  AA+      +++
Sbjct: 261 DMIKVAGEDFITDRLG----KFKFNLSPRAFYQLNPEQTVKLYNQVKYAASLTGTEKVVD 316

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G     +A     V  V+I + ++  A+ N   N+++N       ++        
Sbjct: 317 AYCGVGTIGQWVADQASEVRGVDITRAAIIDAKANAKLNNIDNTYYAVGKAESIVPKWTN 376

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
           E             ++   + VDPPR+G+    + M++      I+Y+SCNP +L ++L 
Sbjct: 377 E------------GFKPDVVIVDPPRTGMGPELIEMLKRVQPKRIVYVSCNPSTLAKNLK 424

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            L+  + ++ +   D FP T H+E  V L R
Sbjct: 425 ELTKKYRVDYIQPIDMFPQTSHVEAVVRLTR 455


>gi|171778765|ref|ZP_02919861.1| hypothetical protein STRINF_00713 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282722|gb|EDT48146.1| hypothetical protein STRINF_00713 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 496

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 142/391 (36%), Gaps = 38/391 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D + Q +  F+    + F          P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLEFKDDLIAQSLKKFKPVGYEKFEIRHTLGMEVPYHYRAKLQFQTRFF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
             ++   +F++ +   + I   +    L   I   + E++    +      K+  I  + 
Sbjct: 141 KGNVKAGLFEEGSHRLVDIKDCLVQDELTQTIINRVTELLEKHHIPIYDERKIAGIRTVM 200

Query: 111 ---TSQSDQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
                 S+Q  +  I  R      +  A       ++       +         KT++  
Sbjct: 201 IRKAKSSNQVQIIFITSRDIFLAPVIKALTAEFEEIKGIAVNYNHSKSSDIYGEKTEVIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
               + E +        +     +F Q N      +    +AA    + D +++ YCG G
Sbjct: 261 GDADISEEVL----DYRFSLSPRAFYQLNPEQTQVLYGQAVAALDVTENDHVIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A     V  ++I   ++  A+ N      +N       ++E      +E     
Sbjct: 317 TIGFAFADKVKSVRGMDIIPEAIADAKKNAQRMGFDNTHYEAGRAEEIIPKWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  LS  +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
            +  +   D FP+T   E  V L ++    H
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLSKRDINHH 455


>gi|268319959|ref|YP_003293615.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus
           johnsonii FI9785]
 gi|262398334|emb|CAX67348.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus
           johnsonii FI9785]
          Length = 449

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 151/387 (39%), Gaps = 40/387 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + N++  +     E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLHKADLDNVKAGQTMPSPEETGYRNKAQVPVREVNGKL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKLFQI 107
               F + + + + +  F      I+ +++++   +R               +R    + 
Sbjct: 140 DIGFFRKHSHDLVPLTNFFTTDPEIDRVLLKVRDILRNNHVPAYDENRNKGEVRYLEVRH 199

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166
              T +    +V L           +    ++         + L     KT + L + DY
Sbjct: 200 SKATGEIMVILVCLHKDFPQLKGVTKEISEIKGV-----TSVVLNHNPKKTNVILGKKDY 254

Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           +   + ++T     + ++    SF Q N+     + +  +        D+ ++ Y G G 
Sbjct: 255 LLWGEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGT 314

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A+H   V  +E+ KP+VE A  N   N + N + V   ++E      +E      
Sbjct: 315 IGLSVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKE------ 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
                   +   IFVDPPR GL    +          I+YISCNP ++ RDL +     +
Sbjct: 369 ------GLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKP 366
             + +   D FP T H+E   +L R+ 
Sbjct: 423 DFDEIDPVDMFPQTPHVESVTVLERQK 449


>gi|116630115|ref|YP_815287.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           gasseri ATCC 33323]
 gi|116095697|gb|ABJ60849.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           gasseri ATCC 33323]
          Length = 450

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 157/382 (41%), Gaps = 34/382 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + N+++       E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLHKADLDNIKVSQTLPSPEETGYRNKAQVPVREVHGKL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111
               F + + + + +  F      I+ ++I++   +R   +        + ++  +D   
Sbjct: 140 DIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLDVRR 199

Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167
           S+ S + +V L+         ++    + +        + L     KT + L + DY+  
Sbjct: 200 SKASGEIMVILVCLHKEFPQLKKVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDYLLW 257

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
            + ++T     + ++    SF Q N+     + +  +        D+ ++ Y G G   L
Sbjct: 258 GEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+H   V  +E+ KP+V+ A  N   N +NN + V   ++E      +E         
Sbjct: 318 SVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPRWAKE--------- 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342
                +   IFVDPPR GL    +          I+YISCNP ++ RDL +     +   
Sbjct: 369 ---GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVRDLQLFREQGYDFN 425

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +   D FP T H+E   +L R
Sbjct: 426 EIDPVDMFPQTPHVESVTVLER 447


>gi|323489809|ref|ZP_08095034.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
 gi|323396547|gb|EGA89368.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
          Length = 454

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 149/387 (38%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y QQL EK D + Q +  +           I   +P  YR +++F     G 
Sbjct: 85  GCQLQHMTYSQQLVEKRDLVVQALERYLKGTKVQVEETIGMEDPWRYRNKSQFQTRLKGS 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            +   +F + + + + ID  +               ++  L + +     ++ ++R  + 
Sbjct: 145 KVIAGLFAEGSHQLLDIDECIVQHPDTTVITNAVKRILEELKMPIYDGKTMKGIIRTIVV 204

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +    T +    +VT    +    LL +  ++    L   +     +   +   ++T   
Sbjct: 205 RTGVNTGEIQLVLVTTRSKIPQKELLLERLKKIDTNLVSIVQNINKEKTSLVFGDETITL 264

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGN 220
             +D + E L      L +     +F Q N    V + + +  AA    +  +++ YCG 
Sbjct: 265 FGKDTIHEELG----ELAFDLSARAFFQLNPTQTVKLYDEIKRAAQLTGKETVVDAYCGV 320

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L LA     V  +++   SV  A+ N  A      K V  +++++ +    E    
Sbjct: 321 GTIGLWLADSAKEVRGMDVLHESVVDAKANAKAQGYT-AKYVTGTAEKWLELWSNE---- 375

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT 338
                    +    + VDPPR+GL D+ +  +        +Y SCNP +L +DL  L+  
Sbjct: 376 --------GFVPDVLTVDPPRTGLADSLLQTILKVKPKRFVYTSCNPSTLAKDLQQLTKI 427

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + IE +   D FP T  +E    LV K
Sbjct: 428 YRIEYIQPVDMFPQTAQVESVTKLVLK 454


>gi|282851234|ref|ZP_06260599.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           224-1]
 gi|311110290|ref|ZP_07711687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           MV-22]
 gi|282557202|gb|EFB62799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           224-1]
 gi|311065444|gb|EFQ45784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           MV-22]
          Length = 448

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 158/383 (41%), Gaps = 34/383 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + N+++       E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLHKADLDNIKVSQTLPSPEETGYRNKAQVPVREVHGKL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111
               F + + + + +  F      I+ ++I++   +R   +        + ++  +D   
Sbjct: 140 DIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLDVRR 199

Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167
           S+ S + +V L+         ++    + +        + L     KT + L + DY+  
Sbjct: 200 SKASGEIMVILVCLHKEFPQLKKVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDYLLW 257

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
            + ++T     + ++    SF Q N+     + +  +        D+ ++ Y G G   L
Sbjct: 258 GEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+H   V  +E+ KP+V+ A  N   N +NN + V   ++E      +E         
Sbjct: 318 SVAKHVKAVRGMEVIKPAVDDANANAKLNGINNAEYVVGKAEEVMPRWAKE--------- 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342
                +   IFVDPPR GL    +          I+YISCNP ++ RDL +     +   
Sbjct: 369 ---GLKTDVIFVDPPRKGLTPEFIDAAVETHPKKIVYISCNPATMVRDLQLFREQGYDFN 425

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP T H+E   +L +K
Sbjct: 426 EIDPVDMFPQTPHVEAVTVLEKK 448


>gi|312868870|ref|ZP_07729056.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
           PB013-T2-3]
 gi|311095610|gb|EFQ53868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
           PB013-T2-3]
          Length = 452

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 147/383 (38%), Gaps = 42/383 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +Y  QL  K  ++ +++    + ++++        P HYR +A+  +      L  
Sbjct: 88  LGHLKYPAQLRFKQHQIEELLAKAHLDDIKVAPTMGMERPYHYRNKAQVPVKLVRGKLET 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
             + + +   + I+ F      I+  ++ +   +R            + ++R  + +  Y
Sbjct: 148 GFYKRGSHTLVPIEDFYIQDPKIDEAIVVVRDLLRKYHVMPYDERTGKGVIRTVMARRGY 207

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---Y 166
            + +    +VT      + +   +    +   +   K  +Q +      K+  D +   +
Sbjct: 208 YSHEVMVVLVTNTKRLPMAE---QIVDGIVAGVPEVKSIVQNVNDKRTNKLLGDTNKTLW 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225
             + +      + +     SF Q N      + +  +  A       +++ YCG G  SL
Sbjct: 265 GKDEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIGNAGLDGSQTVIDAYCGIGTISL 324

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+H  +V  VEI   ++         N + N + V   +++            +    
Sbjct: 325 AVAKHAKQVYGVEIVPAAIAD----AKHNGIKNAEFVVGKAED------------QFAKW 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIE 342
                +   + VDPPR GL ++ +          ++Y+SCNP +L RD+   +   + + 
Sbjct: 369 QAAGLKPDVVIVDPPRKGLAESLIEATGKMGPQKVIYVSCNPATLVRDIQRFAEVGYHVT 428

Query: 343 R-LALFDQFPYTRHMECGVLLVR 364
           + +   DQFP T H+E   LL R
Sbjct: 429 KPIQPVDQFPQTTHVESVTLLER 451


>gi|262066022|ref|ZP_06025634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380272|gb|EFE87790.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium
           periodonticum ATCC 33693]
          Length = 451

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 160/385 (41%), Gaps = 34/385 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M     + +++I       +  +YR +        G+
Sbjct: 80  GCDFAMLKYESQLKYKKLMVEEVMRKIAGLSDIEISNVLASEDVYNYRNKIIEPFSVYGN 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++ E+   +    +        +  L  +  
Sbjct: 140 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNVMI 199

Query: 110 LTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+ V +I    + +  +    RLR+ +   K  I +   + KT   +      
Sbjct: 200 RTNSNNEAMLVLIINSNKITENIKNLLFRLREKIEEIK-SIYISLNSKKTNTVIGEKNIF 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y +E +      + +     SF Q N      + +  +     I    +++ Y G G  
Sbjct: 259 IYGEESIKENINGIEFHISPTSFFQINVKQAKRLYDIAINFFDNIDDKYIVDAYSGTGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++A+   +V A+EI K + E  +     N + N++ +    ++             L 
Sbjct: 319 GMIMAKKAKKVYAIEIVKSASEDGKRTAKENGIENIEFINGPVEK------------ELV 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
            I  ++ +  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 367 KIINNNQKIDTIIFDPPRKGLEASIIDTVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +++L   D FP T H+EC  L+ R+
Sbjct: 427 LKKLQAVDMFPQTSHIECVGLIERR 451


>gi|58336866|ref|YP_193451.1| RNA methyltransferase [Lactobacillus acidophilus NCFM]
 gi|227903424|ref|ZP_04021229.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           acidophilus ATCC 4796]
 gi|58254183|gb|AAV42420.1| RNA methyltransferase [Lactobacillus acidophilus NCFM]
 gi|227868744|gb|EEJ76165.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           acidophilus ATCC 4796]
          Length = 450

 Score =  268 bits (685), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 157/382 (41%), Gaps = 34/382 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + N+++       E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLKKAHMDNIEVGETMASPEQTGYRNKAQVPVREVNGQL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLT 111
               F + + + + +  F      I+ ++I +   +         E   + ++  +D   
Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLIAVRDILRKNNVPAYDEINHKGEVRYLDVRR 199

Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167
           S+ + + +V LI   L  D  +   I    +       + L     KT + L + DY+  
Sbjct: 200 SKATGEIMVILIC--LHKDFAQLPRIAAEVSQIPGVTGLILNHNPKKTNVILGKKDYLVF 257

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
            ++++T     L +R    SF Q N+     + +  +        D+ ++ Y G G   L
Sbjct: 258 GNDQITDKIGDLKFRISPQSFFQINSLQTPRLYDLAIKKAALKPSDVVIDAYSGIGTIGL 317

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+H   V  +E+ + +++ A+ N   N ++N +     ++E      +          
Sbjct: 318 SVAKHVKAVRGIEVVRDAIKDAKDNAELNGIDNAEYYLGKAEEIMPRWAK---------- 367

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342
                +   +FVDPPR GL    +          I+YISCNP ++ RDL +     +  +
Sbjct: 368 --QGLKTDVVFVDPPRKGLTPEFIDATVKTGPKKIVYISCNPATMIRDLQLFQEQGYEFD 425

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+   D FP T H+E   +L R
Sbjct: 426 RIDPVDMFPQTPHVESVTVLER 447


>gi|329116332|ref|ZP_08245049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parauberis NCFD 2020]
 gi|326906737|gb|EGE53651.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parauberis NCFD 2020]
          Length = 452

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 144/381 (37%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  ++   +              I    P  YR +A+  +      L    F 
Sbjct: 88  YSEQLKFKAKQVTDNLYKTAGLTDVEVAETIGMENPFAYRNKAQIPVRRVNGKLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + + + + I  ++     I+ L            +          L++  + +       
Sbjct: 148 KNSHDLLPISDYLIQDKEIDRLINYTRDLLIRFEVSPYDEKEKTGLIKNLVVRRGQ---N 204

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
           S + ++  +  R       +   ++ +   A    +Q I   N   I   ++    Y  +
Sbjct: 205 SGEMMLIFVTSRPKVFRVDQIIAKITEEFPAIVSVMQNINDQNGNAI-FGKEFRTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T +     Y     SF Q N  +   + +  +  +   + D +++ Y G G   L  A
Sbjct: 264 TITDSMLGNTYEISAQSFYQVNTEMAEKLYQTAIDFSNLTKDDIVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  VE+ + +V  AR N   N + NV+ V   ++   +   +E            
Sbjct: 324 KSVKKVYGVEVIEQAVLDARKNAELNGIKNVQFVTDIAEAAMEKWSKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345
                 I VDPPR GL ++ +   V+  P  I Y+SCNP ++ RD+ +     + ++++ 
Sbjct: 372 GIHPNVILVDPPRKGLTESFIRASVEMNPEKITYVSCNPATMARDIKLYQELGYDLKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D FP T H+EC  LL ++ 
Sbjct: 432 PVDLFPQTHHVECVSLLEKRN 452


>gi|288555150|ref|YP_003427085.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288546310|gb|ADC50193.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
          Length = 471

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 150/389 (38%), Gaps = 42/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L   +Y+  L  K D +RQ        N++       I   +P +YR +++  +   
Sbjct: 98  GCQLQHMEYQATLVSKQDIIRQAFERHTKLNMEKQVIQPTIGMEDPWYYRNKSQLQVAKK 157

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAK 103
           G  +   ++   + + + +   M      N            L + +    +   L+R  
Sbjct: 158 GGRVIAGLYAMNSHKVIDLSACMVQHKATNKVTRVMKQILSDLNVSIYDERKHTGLIRTI 217

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++ + T      +VT        +   E    ++  L      +Q I   NKT +   
Sbjct: 218 VTRVGFETGHVQVVLVTNEKEIPRQNVLIE---EIKKRLPEVNSLMQNIN-GNKTSLIFG 273

Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            + V    +E +      + +     +F Q N    V +  E   AA       +++ YC
Sbjct: 274 EETVHLDGEEVIEEKLGDISFELSARAFFQLNPIQTVKLYNEAKRAAKLTGTEKVVDAYC 333

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA   + V  +++ + S+  AR N   +  ++      +++E+     +E  
Sbjct: 334 GVGTIGLWLADGAEEVRGMDVIEASIIDARVNADKHGYDHFTYEVGTAEEWLPKWVKE-- 391

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL- 335
                      ++   + VDPPR+G D+  +  +       ++Y+SCNP +L +D+  L 
Sbjct: 392 ----------GWKPDVVIVDPPRTGCDETLLRTITGVKPKRVVYVSCNPSTLAKDVEYLR 441

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  + ++ +   D FP+T  +E   +L +
Sbjct: 442 TKGYKVDNIQPVDMFPWTAQVESVTVLSK 470


>gi|77413832|ref|ZP_00790011.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
 gi|77160132|gb|EAO71264.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
          Length = 453

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 143/381 (37%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YEQQL  K  ++   +         +    +  + P+ YR +A+  +      L    F 
Sbjct: 88  YEQQLLFKQKQVADNLYKIAHISDVLVEPTLGMTIPLAYRNKAQVPVRRVDGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + +   + I+ ++     I+AL            ++     +   L+R  + +  + T Q
Sbjct: 148 KNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKPYDEEQQSGLIRNLVVRRGHYTGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               +VT      L D   E   +L  A  +    +Q I     + +   ++    Y  +
Sbjct: 208 LMLVLVTTRPKIFLIDQMIE---KLVSAFPSVVSIMQNIND-RNSNVIFGKEFRTLYGSD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +        Y     SF Q N  +   + +  +  +     D +++ Y G G   L +A
Sbjct: 264 TIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N   N + N   V  S++       +E            
Sbjct: 324 KQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ V          I YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDIKLFEELGYHLVKIQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D FP T H+EC  LL R  
Sbjct: 432 PVDLFPMTHHVECVALLQRSK 452


>gi|302388260|ref|YP_003824082.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
 gi|302198888|gb|ADL06459.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
          Length = 454

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 139/389 (35%), Gaps = 43/389 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y +QL  K  ++   +              +   EP  YR +A+F    D D
Sbjct: 82  GCQLQAMDYGEQLRYKERKIYNNITRIGGFSEVPMQPIMGMDEPWRYRNKAQFPWGLDKD 141

Query: 57  DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKL 104
                  +  +T   +  +  + G      ++ ++                 + L+R  L
Sbjct: 142 GNIVTGFYAGRTHSIISCEDCLLGIEENQEVLRQIKAHMERYHLIPYEEASHKGLIRHTL 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  + T +     V             E  + +          I       +T + L  
Sbjct: 202 IRKGFRTGEIMVCQVINGNSLPHSKELVERLLEIPGM-----TSISFNINKERTNVILGD 256

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYC 218
                Y    +T     + YR    SF Q N      +    LA   G+ G   + +LYC
Sbjct: 257 KVENLYGPGYITDFIGAVKYRISPLSFYQVNPVQTEKLYGTALA-YAGLTGVETVWDLYC 315

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL LA+   +V  VEI   ++E AR N   N ++NV+     ++E       +  
Sbjct: 316 GIGTISLFLAQKAKKVYGVEIVPQAIEDARENARLNGLDNVEFFVGKAEEVLPEQYEK-- 373

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                    H      I VDPPR G D+A +  +       ++Y+SC+  +L RD+  L+
Sbjct: 374 ---------HQVYADVIVVDPPRKGCDEACLNTIVKMGPKRVVYVSCDSATLARDMKYLA 424

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364
              + +E++   D FP   H E   L+V+
Sbjct: 425 ENGYKVEKVRGCDMFPQALHTEVCCLIVK 453


>gi|237738953|ref|ZP_04569434.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229423553|gb|EEO38600.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 453

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 160/384 (41%), Gaps = 34/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M     +P+++I       +  +YR +        G+
Sbjct: 80  GCDFAMLKYESQLKYKKLMVEEVMRKIAGLPDIEISDVLASEDVYNYRNKIIEPFSVYGN 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++ E+   +    +        +  L  +  
Sbjct: 140 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNVMI 199

Query: 110 LTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+ V +I    + +  +    RLR+ +   K  I +   + KT   +      
Sbjct: 200 RTNSNNEAMLVLIINSNKITENIKNLLFRLREKIEEIK-SIYISLNSKKTNTVIGEKNIF 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y +E +      + +     SF Q N      + +  +     I    +++ Y G G  
Sbjct: 259 IYGEESIKENLNGIEFHISPTSFFQINVKQAKRLYDIAINFFDNIDDKYIVDAYSGTGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++A+   +V A+EI K + E        N + N++ +  + ++             L 
Sbjct: 319 GMIMAKKAKKVYAIEIVKSASEDGERTAKENGIENIEFINGAVEK------------ELV 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
           ++   + R  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 367 NLINANKRIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 426

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +++L   D FP T H+EC  L+ +
Sbjct: 427 LKKLQAVDMFPQTSHIECVGLIEK 450


>gi|313896553|ref|ZP_07830102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312974738|gb|EFR40204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 457

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 130/388 (33%), Gaps = 45/388 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++   M              +  + P +YR + +F +     
Sbjct: 85  GCQLQHLSYEAQLTAKRLQVVDAMTHIGKLPHVPVKETLGAASPWNYRNKMQFPVGIHQG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALM-------IEMMATIRLEPLLRAKLFQIDY 109
            +    F Q +   +  +         NAL         ++   +  E   R  L  I  
Sbjct: 145 QIVVGCFAQGSHRIIDTEDCHIQREGNNALANAVRDIVTKLRIPVYNEDTHRGILRHIVG 204

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTKICL 162
              Q D+ +  ++         +E    +R+ L       Q        +     T +  
Sbjct: 205 RVGQGDELMAVIVTAAKELPRKKELIRMMRERLPQLVSIQQNIQTYRNNVVMGRDTVLLW 264

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            +  + + L      L +     SF Q N      + E  L  A       +++ YCG G
Sbjct: 265 GKPTIRDTLG----KLSFHISPRSFFQVNTAQAAVLYEQALQYADLHGTETVIDAYCGTG 320

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE----- 276
             +L LA+    V  +EI +P++  AR N   N + N + +   +     ++ R+     
Sbjct: 321 TITLFLAQRAWNVYGIEIVRPAILDARKNACDNGIKNAEFIVGDTTAVMPSLYRQGVRPD 380

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILS 336
                           KT     PR                I+Y+SCNP +L RDL+I+ 
Sbjct: 381 VVVVDPPRAGCTPTVLKTFANMKPR---------------RIVYVSCNPATLARDLAIMK 425

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLV 363
           T  +    +   D FP T H+EC   + 
Sbjct: 426 TLGYEAREIQPVDLFPQTSHVECVAWMT 453


>gi|322372299|ref|ZP_08046835.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C150]
 gi|321277341|gb|EFX54410.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C150]
          Length = 452

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 152/388 (39%), Gaps = 41/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L+  +Y++QL  K D L Q +  F+  + +       I   EP HYR + +F     
Sbjct: 81  GCQLMHLRYDKQLEFKTDLLGQALKKFKPEHFESYDIRPTIGMKEPRHYRAKLQFQTRSF 140

Query: 55  GDDLY-HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAK 103
           G       +F + +   + I+  +    L  A++ +++  +    L          +R  
Sbjct: 141 GGGSVKAGLFAEGSHRLININNCVVQDKLTQAIVNQVVVLLDKYKLPIYDERKISGIRTV 200

Query: 104 LFQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           + +    ++Q     VT   + + +L+ +        +  A++   Y         +T+I
Sbjct: 201 MIRRALGSNQVQLIFVTSKSVSFAKLVKELTAIYPEIVTIAIN-YNYSKSSEIYGQETEI 259

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCG 219
              +D + E +        +     +F Q N      +    + A       +L++ YCG
Sbjct: 260 IWGQDTISEEVL----DYSFELSPRAFYQLNPQQTEVLYGQAVKALDVDKNDNLIDAYCG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A     +  ++I   +++ AR N  A  + N       +++      +E   
Sbjct: 316 VGTIGLAFANKVKDIRGMDIIPEAIDDARKNAEALGLENYHYEVGKAEDIIPRWYKE--- 372

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                     YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+ 
Sbjct: 373 ---------GYRADALIVDPPRTGLDDKLLQTILEYVPEKMVYVSCNVSTLSRDLVSLTQ 423

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L RK
Sbjct: 424 AYEVNYIQSVDMFPHTARTEAVVKLTRK 451


>gi|270292705|ref|ZP_06198916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M143]
 gi|270278684|gb|EFA24530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M143]
          Length = 455

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 153/384 (39%), Gaps = 40/384 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKNSLYKIAGITDVEVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFFIQDPVIDQVVVALRNLLRRYDLKPYDEKEQSGLIRNLVVRRGHFSGQ 207

Query: 114 SDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT          L +   +    +   +     Q        + K    +DY+ +
Sbjct: 208 IMVILVTTRPKVFRIEQLIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWKTLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----FQIAGPAFYQVNTQMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N A N++ N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSKKNAALNNITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKPSGW 369
             D FP T H+E  VL+ +   G 
Sbjct: 432 PVDLFPQTHHVEAVVLMSKANPGK 455


>gi|239625145|ref|ZP_04668176.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239519375|gb|EEQ59241.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 554

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 146/388 (37%), Gaps = 43/388 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLY 59
            G  ++D +Y +QL  K   +  +          I   +P HYR +       D   ++ 
Sbjct: 186 GGCQMLDMEYTEQLKRKQKVVEDLFRGVCPVKPIIGMKDPFHYRNKVHAVFDRDKRGNII 245

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQID 108
             ++ + + + + ++  M      + +            I          LLR  L +  
Sbjct: 246 SGIYQENSHDVIPVETCMIEDKKADEIIGTIRGMLKSFKIRTYDEDTGYGLLRHVLIRRA 305

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161
           + T   ++ +V L+    +  +       LR+        IQ I          NK  + 
Sbjct: 306 FST---NEIMVVLVTASPVFPSKNNFVKALREKHPEITTIIQNINGRGTSMVLGNKENVL 362

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             + Y+ + L        +R    SF Q N      +    L  A    Q  +++ YCG 
Sbjct: 363 YGKGYIVDELC----GCKFRISSKSFYQINPVQTEVLYGKALELAGLKGQEVVIDAYCGI 418

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   ++ +R   +V+ VE+ + +V+ A  N   N ++N++     +  F   M       
Sbjct: 419 GTIGIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFYCNDAGRFMVNMAE----- 473

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337
                     +   + +DPPRSG  +  +  +       ++Y+SCNP++L RD+  +   
Sbjct: 474 -------RGDKADVVIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVRDVRYMKKL 526

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +  E +   D FP TRH E  V L RK
Sbjct: 527 GYAAEGVWPVDMFPATRHTEIIVELCRK 554


>gi|251783009|ref|YP_002997312.1| putative RNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391639|dbj|BAH82098.1| putative RNA methyltransferase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127818|gb|ADX25115.1| RNA methyltransferase, TrmA family protein [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 452

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 155/387 (40%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPAGYEQFEIRHTKGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + IDY +    L   ++    +++   RL       +  I  + 
Sbjct: 141 GGSVKAGLFSQGSHRLVPIDYCLVQDALTQEIINSITQLVDKYRLPVYNERNIAGIRTVM 200

Query: 111 ---TSQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
                 SDQ  + ++  +      L+ D  +        AL+  + +   I    +T+I 
Sbjct: 201 VRKAQASDQVQIIIVSSKEISLAGLIGDVTKAFPQIKMVALNINRSKSSDI-YGEETEIL 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +   G  L       +F Q N      +  E V A   G+   +++ YCG 
Sbjct: 260 WGQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGVTDHIIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+     A     V  ++I   ++E A+ N  A   +N       +++      +     
Sbjct: 316 GSIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK----- 370

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   I VDPPR+GLD+  +  +  Y    ++Y+SCN  +L RDL  L+T 
Sbjct: 371 -------QGYRADAIIVDPPRTGLDEKLLKTILRYQPKQMVYVSCNTSTLARDLIQLATV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L +K
Sbjct: 424 YDVHYIQSVDMFPHTARTEAVVKLQKK 450


>gi|322412380|gb|EFY03288.1| RNA methyltransferase, TrmA family protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 452

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 150/386 (38%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPAGYEQFDIRHTKGMKKPNHYRAKLQFQLRLF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID+ +    L   I   + +++   RL       +  I  + 
Sbjct: 141 GGSVKAGLFSQGSHRLVPIDHCLVQDALTQEIINTITQLVDKYRLPVYNERNIAGIRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLDDAWRECAI-----RLRDALHARKYQIQLIGRANKTKICL 162
                 SDQ  + ++  + +  A     +     +++                 +T+I  
Sbjct: 201 VRKAQASDQVQIVIVSSKEISLAGLIGDVTKAFPQIKTVALNINRSKSSDIYGEETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G    +++ YCG G
Sbjct: 261 GQEAIYEEVLDYGFAL----SPRAFYQLNPEQTEVLYGEVVEALDVGTTDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +  L  A     V  ++I   ++E A+ N      +N       +++      +      
Sbjct: 317 SIGLAFAGKVKSVRGMDIIPEAIEDAQKNAKVMGFDNTYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L+T +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILRYQPKQMVYVSCNTSTLARDLVQLATVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L +K
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKK 450


>gi|94994824|ref|YP_602922.1| tRNA (uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10750]
 gi|94548332|gb|ABF38378.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10750]
          Length = 451

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 144/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L     E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  A   +N       +++      +      
Sbjct: 317 SIGFTFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|323485341|ref|ZP_08090690.1| hypothetical protein HMPREF9474_02441 [Clostridium symbiosum
           WAL-14163]
 gi|323401377|gb|EGA93726.1| hypothetical protein HMPREF9474_02441 [Clostridium symbiosum
           WAL-14163]
          Length = 490

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/419 (20%), Positives = 155/419 (36%), Gaps = 75/419 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29
              L +  YE+QL  K  ++   +                                    
Sbjct: 81  GCQLQMMSYEEQLKFKQRKVYNNLKRIGGLDNLYLPGEGPGAGEKDGEGDRAGDREGGES 140

Query: 30  -----VPNLQIFRSEPIHYRMRAEFHIWHDGDD-LYHIMFDQQTKERMRIDYFMPG---S 80
                +    I   +P  YR +A+F    + ++ +    +  +T   +  D  + G   +
Sbjct: 141 GRKPVIMEPIIGMEDPWRYRNKAQFPFGMNKENEVIAGFYAGRTHCIIENDDCLLGIQEN 200

Query: 81  LLINALMIEMMATIRLEP--------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
             I A + ++M    ++P        L+R  L +  + T +     V         + + 
Sbjct: 201 REILAAVKQIMTQYGIKPYQEESHTGLIRHVLIRKGFRTGELMVCFVVNGRKLPYSEGFV 260

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFT 188
           E  + +   + +  Y + +     KT + L R+    Y    +T     + YR    SF 
Sbjct: 261 ERLLEIPG-MTSISYNVNM----EKTNVILGREVVNLYGPGYITDYIGNVKYRISPLSFY 315

Query: 189 QPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           Q N      +    L    G+ G+  + +LYCG G  SL L++   +V  VEI   ++E 
Sbjct: 316 QVNPVQTERLYGTALE-YAGLTGEETVWDLYCGIGTISLFLSQKAKKVYGVEIVPQAIED 374

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR N   N + NV+     ++E       E +                I VDPPR G D 
Sbjct: 375 ARENARLNGIENVEFFVGKAEEVLPKQYEEDK-----------VYADVIVVDPPRKGCDP 423

Query: 307 ATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             +  +       ++Y+SC+  +L RD+  L    + +ER++  D FP + H+E  +++
Sbjct: 424 VCLDTIVMMGPKKVVYVSCDSATLARDVKYLEERGYWVERVSCVDMFPMSGHVESVIMM 482


>gi|299144530|ref|ZP_07037609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517618|gb|EFI41358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 520

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 155/379 (40%), Gaps = 34/379 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
               L   YE+QL  K +++   ML            I    P +YR   +  +  DG  
Sbjct: 73  GCDFLEYDYEKQLEWKKEKVNNDMLRIGNIECKVENTIGMQYPYYYRNNIQLKV-VDGKI 131

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
            Y   F + +K+ + I + +     IN   IE++   +    + + + + + L     + 
Sbjct: 132 GY---FSKNSKDLISIKHCLIAGKEINRA-IEILKNWKGLNSVDSIIIRQNKL----GEL 183

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKICLDRDYVDERLTVA 174
            + L+    +    +  +  L   +      K  +       + K     DY+ + L   
Sbjct: 184 FIVLVTKSEIKKVNQLLSELLELKICGIFENKNTLNKFRFGREFKKLYGEDYLTDELC-- 241

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233
                ++    SF Q N      + +  +   +  + D++ +LYCG G  SL  AR+  +
Sbjct: 242 --GFKFKLSPVSFFQVNTTQTEKLYQEAIDYLEINKQDIIFDLYCGIGTISLFAARNAKK 299

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VEI + ++E AR N   N V+NV+ +   S+E  + +           +D       
Sbjct: 300 VIGVEIVENAIEDARKNAEFNSVDNVRFICGKSEEILEKL-----------LDEEKIIPN 348

Query: 294 TIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            I +DPPR+GLD+  +  +       I YISCN  +  RDL +L   + IE++   D F 
Sbjct: 349 KIILDPPRAGLDEKLIKKLLEIMPEKISYISCNSSTQARDLKLLKEKYKIEKIQPVDMFC 408

Query: 352 YTRHMECGVLLVRKPSGWH 370
            + H+E  V L +  S  H
Sbjct: 409 NSVHVETVVYLSKLKSDEH 427


>gi|313114891|ref|ZP_07800389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622768|gb|EFQ06225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 461

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 146/391 (37%), Gaps = 42/391 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAE--FHIWHDGDDLYHIM 62
           +L   Y  QL +K + +++++  +           P HYR +    F     G  L   +
Sbjct: 1   MLGMDYAAQLKQKEETVKKLLGKYGPVEHIRGMETPYHYRNKVISTFTTGW-GGKLTSGI 59

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATI-----------RLEPLLRAKLFQIDYLT 111
           +   + + + ++  +    +++  M+ + A             +   LLR  L +   +T
Sbjct: 60  YAANSHKVLPVESCLLQDEVLDKTMLAVRAAAGTCHYQPFNEDKGTGLLRHCLLRRGVMT 119

Query: 112 SQSDQAIVTL--------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
            Q    +VT          + + L     +  + +   +     +   +   +  K+   
Sbjct: 120 GQVMVVLVTAQPVLPGAKNFVKALLTEAGKQGVAITTIVQNVNDRKTSVVLGDMEKVLYG 179

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           + ++ + L        Y     SF Q N      +    + A      ++ L+ YCG G 
Sbjct: 180 KGFILDTLCGK----TYAISPRSFYQINHTQTEVLYGLAVDAAHLTGKEVVLDAYCGIGT 235

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L  A H  +V+ VE+ + +V  A  N   N V N +     + ++             
Sbjct: 236 IGLTAADHAKQVVGVEVNREAVHDAIGNAKHNGVKNARFFAADATQWIGEAA-------- 287

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTH 339
                   R   IF+DPPR G     +  V   A   ++Y+SCNP +L RDL +L+   +
Sbjct: 288 ----AAGERADVIFMDPPREGSTPQFIDSVARMAPKRVVYVSCNPATLARDLELLTRKGY 343

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
            +E     D FP++ H+E    L +  +  H
Sbjct: 344 KVESSTPVDMFPHSEHIETVCALSKLNAKQH 374


>gi|167039861|ref|YP_001662846.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
 gi|300915379|ref|ZP_07132693.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
 gi|307724814|ref|YP_003904565.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513]
 gi|166854101|gb|ABY92510.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514]
 gi|300888655|gb|EFK83803.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
 gi|307581875|gb|ADN55274.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513]
          Length = 452

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 162/391 (41%), Gaps = 47/391 (12%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGD 56
            G +  +  Y  QL  K D +++++    + + +   I +S   H YR + E+    D +
Sbjct: 78  GGCIYQNVDYSDQLKIKEDIVKKLLEKEGIRDYEFLRIVKSPKEHGYRNKMEYTFGKDKE 137

Query: 57  DLYHIMFDQQT---------KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ- 106
               +   ++          K  +  D F+    L     I+       +   +  L   
Sbjct: 138 GNEVLGLHRKGRFYEVVMTDKCNIVDDDFLKALNLTFDYAIKKGLPFYDKKTHKGFLRHL 197

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGRANK 157
           +    S++ + ++ ++    L+  ++E            RL   LH +           K
Sbjct: 198 VVRKASKAGEILLNIVTTTQLEHDFKELIEIYKNVDFESRLVGVLHTQNDSWSDAVVCEK 257

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
             +   +DY+ E L      L ++    SF Q N+     + E V      +    + +L
Sbjct: 258 LNVLYGKDYLIEELL----GLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDL 313

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G   +++A    +V+ +E+ + +V +AR N   N + N   +     +        
Sbjct: 314 YSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFIAGDVSK-------- 365

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSI 334
               +LK+I         + VDPPRSG++   +  +++  P  ++Y+SCNP+SL RDL I
Sbjct: 366 ----KLKEI---KEMPDVVIVDPPRSGINPKALEDIIKFNPQKVVYVSCNPESLARDLKI 418

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364
            S   + ++++   D FP+T H+EC VL+ R
Sbjct: 419 FSEGGYKVDKVKCVDMFPHTYHVECVVLMSR 449


>gi|319946766|ref|ZP_08021000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
           ATCC 700641]
 gi|319746814|gb|EFV99073.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
           ATCC 700641]
          Length = 452

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 152/380 (40%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +            L +    P+ YR +A+  +      +    F 
Sbjct: 88  YTEQLKFKAKQVKDSLYKMAGISDMEVPLTLGMDHPVQYRNKAQVPVRRVNGQVETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M I+ F     +I+ +++ +   IR              L+R  + +  + + +
Sbjct: 148 KNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPYDEKEQSGLIRNLVVRRGHHSGE 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT        D   E  I+    ++  +     Q        + +    +DY+ +
Sbjct: 208 IMVILVTTRPKIFRVDQLIEQLIKQFPVIKSVMQNINDQNTNAIFGKEWRTLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +      + D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFADLKEEDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N A N++ N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC  LLV++
Sbjct: 432 PVDLFPQTHHVECVSLLVKR 451


>gi|282934859|ref|ZP_06340092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
 gi|281301090|gb|EFA93401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
          Length = 481

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 161/382 (42%), Gaps = 33/382 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
            +L   +YE+QL  K  ++  ++      +  N  +   E + YR +A+  + +    L 
Sbjct: 114 ASLAHIKYEKQLEFKRQQVINLLEKAHLNKKVNETVASPEEVGYRNKAQVPVRNVKGKLE 173

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTS 112
              F + + + + ++ F      I+ +++     +R   +        + ++  ++   S
Sbjct: 174 IGFFRKHSHDLVPMENFFTTDPEIDRVLVATRDILRKNHVPAYDEVKNKGEVRYLEVRRS 233

Query: 113 QSD-QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV--- 167
           +++   +V L+          + A  +     +    + L     KT + L + DY+   
Sbjct: 234 KANSDMMVILVCLHKDFPQLVKVADEISQI--SGVVSVILNHNPKKTNVILGKHDYLLAG 291

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           + ++      + ++    SF Q N+     +    +      + D +++ Y G G   L 
Sbjct: 292 NPQIEDKIGDIRFKISAQSFFQINSLQTPRLYNLAIEKAGLSKKDTVIDAYSGIGTIGLS 351

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +A+H  +V  VEI KP+V+ AR N   N + N + V   ++E       E          
Sbjct: 352 VAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPNWVNE---------- 401

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIER 343
               +   IFVDPPR GL    +   V+  P  I+YISCNP ++ RDL++     +  E 
Sbjct: 402 --GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVRDLTMYQELGYDFEE 459

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP T H+EC  +L +K
Sbjct: 460 ITPVDMFPQTPHVECVTVLEKK 481


>gi|296876678|ref|ZP_06900726.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432180|gb|EFH17979.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 452

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/381 (18%), Positives = 151/381 (39%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  + +  +            L +    P+ YR +A+  +      +    F 
Sbjct: 88  YPEQLKFKAKQAKDSLYKMAGITDMEVPLTLGMDHPVQYRNKAQVPVRRVNGQVVTGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M I+ F     +I+ +++ +   IR              L+R  + +  + + +
Sbjct: 148 KNSHDLMPIEDFYIQDPVIDQVVLALRDLIRRFDLKPYDEKEQSGLIRNLVVRRGHHSGE 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    ++  +     Q        + +    +DY+ +
Sbjct: 208 IMVILVTTRPKVFRVDQLIEQLIKQFPAIKSVMQNINDQNTNAIFGKEWRTLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGNA----FQISGPAFYQVNTEMAEKLYQTAIDFAELKEEDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N + N + N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNASLNGITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D FP T H+EC  LLV++ 
Sbjct: 432 PVDLFPQTHHVECVSLLVKRN 452


>gi|315037788|ref|YP_004031356.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325956263|ref|YP_004286873.1| RNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|312275921|gb|ADQ58561.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325332828|gb|ADZ06736.1| RNA methyltransferase [Lactobacillus acidophilus 30SC]
          Length = 448

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 154/386 (39%), Gaps = 40/386 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + ++++ +     E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLKKAHLDDIEVGQTLPSPEQTGYRNKAQVPVREINGQL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107
               F + + + + +  F      I+ +++ +              I  +  +R    + 
Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDILRKYRVPAYDEINHKGEVRYLDVRR 199

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166
              T +    +V L      +D  R   +    +       + L     KT + L + DY
Sbjct: 200 SKATGEIMVILVCLH-----NDFPRLLGVAAEVSQIPGVTGLILNHNPKKTNVILGKKDY 254

Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           +   ++++T     L +R    SF Q N+     + +  +        D+ ++ Y G G 
Sbjct: 255 LVLGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKKADLKPSDVVIDAYSGIGT 314

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A+H   V  +E+ + +++ A+ N   N ++N K     ++E      +       
Sbjct: 315 IGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDIDNAKYYLGKAEEIMPRWAK------- 367

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTH 339
                   +   +FVDPPR GL    +          ++YISCNP ++ RDL +     +
Sbjct: 368 -----QGLKTDVVFVDPPRKGLTPEFIDATAKTGPEKVVYISCNPATMVRDLQLFQEQGY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
             +R+   D FP T H+E   +L +K
Sbjct: 423 EFDRIDPVDMFPQTPHVEAVTVLTKK 448


>gi|330718855|ref|ZP_08313455.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
           fallax KCTC 3537]
          Length = 465

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 39/383 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L+  +Y  QL  K ++++Q+             I    P  YR +A+  +      L   
Sbjct: 97  LVNLKYSAQLLFKQNQVQQLFKKMNIDVTVAPTIGMENPTAYRNKAQVPVQEINGQLETG 156

Query: 62  MFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYL 110
            + + + + +  ++F      I+            L I        +  +R  + +  Y 
Sbjct: 157 FYRRGSHKLVPTNHFYIQDPKIDEAVSIVRDVLRELKISAYDEDTKKGTIRHIMVRRGYY 216

Query: 111 TSQSDQAIVTLIYHRLLDDA----WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           + +    I+T     L  D      RE    L+  +H    ++  +      ++    D+
Sbjct: 217 SHELMVVIITHTAKLLGSDIIIKKLREQLPELKSLIHNVNNKMTNVIMGEDNRVMWGEDH 276

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
           + ++L      L +    NSF Q N      + +      +    D++ + Y G G  +L
Sbjct: 277 IHDQLL----DLDFVIGPNSFYQVNPQTTSVLYQLAADKAQLKPQDVVVDAYSGIGTITL 332

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A    +V  VEI + +V  A+ N   N ++NV  +   + E       E         
Sbjct: 333 SIANRVKKVYGVEIVQQAVVDAQLNAKNNQISNVSFIAKDAPEQMAQWAAE--------- 383

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIE 342
                +   +FVDPPR GL +  +  +        +YISCNP +L RD + I++  + I+
Sbjct: 384 ---GLKPDVVFVDPPRKGLTEDLIEAISNMDTKTFVYISCNPATLARDAAQIIAAGYHID 440

Query: 343 -RLALFDQFPYTRHMECGVLLVR 364
             +   DQFP T H+E   +  +
Sbjct: 441 GDIQPLDQFPQTTHVETVAVFRK 463


>gi|290580745|ref|YP_003485137.1| putative RNA methyltransferase [Streptococcus mutans NN2025]
 gi|254997644|dbj|BAH88245.1| putative RNA methyltransferase [Streptococcus mutans NN2025]
          Length = 454

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 144/379 (37%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y QQL  K  ++   +     + ++ +        P  YR +A+  +      L    F 
Sbjct: 88  YGQQLNFKRKQVINSLSKIAGISDIDVADTLGMDNPTAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + +   M I+ +      I+ L     +++    L+P        L+R  + +  + T Q
Sbjct: 148 KNSHALMPIEDYYIQDKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYTGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               +VT        +   E   ++     A K  IQ I     T      +    Y ++
Sbjct: 208 IMLVLVTTRSKIFRIEQMIE---KIVSEFPAVKSIIQNIND-RNTNAIFGSEFRTLYGED 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +        Y     SF Q N  +   + +  +  +     D +++ Y G G   L  A
Sbjct: 264 TIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDFSDLTPDDTVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A  N A N++ NV  V  S+++   +  +             
Sbjct: 324 KKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYVADSAEKAMASWSK------------R 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +    A     I YISC P ++ RD+ +     + + ++ 
Sbjct: 372 GIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMARDVKLYEELGYKLVKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LL +
Sbjct: 432 PVDLFPQTHHVECVSLLEK 450


>gi|306826963|ref|ZP_07460262.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
 gi|304430825|gb|EFM33835.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes ATCC
           10782]
          Length = 451

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 144/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L     E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  +   +N       +++      +      
Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNAYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|227889470|ref|ZP_04007275.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849948|gb|EEJ60034.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 450

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 156/381 (40%), Gaps = 34/381 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + N+++ +     E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111
               F + + + + +  F      I+ ++I++   +R   +        + +   ++   
Sbjct: 140 DIGFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEARYLEVRR 199

Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167
           S+ + + +V L+         +E    + +        + L     KT + L + DY+  
Sbjct: 200 SKATGEIMVILVCLHKDFPQLKEVTKEISEIKG--VTSVVLNHNPKKTNVILGKKDYLLW 257

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
            + ++T     + ++    SF Q N+     + +  +        D+ ++ Y G G   L
Sbjct: 258 GEPQITDKIGNVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+H   V  +E+ KP+VE A  N   N + N + V   ++E      +E         
Sbjct: 318 SVAKHVKAVRGMEVIKPAVEDANANAKLNGITNAEYVVGKAEEVMPRWAKE--------- 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342
                R   IFVDPPR GL    +          I+YISCNP ++ RDL +     +  +
Sbjct: 369 ---GLRTDVIFVDPPRKGLTLEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGYDFD 425

Query: 343 RLALFDQFPYTRHMECGVLLV 363
            +   D FP T H+E   +L 
Sbjct: 426 EIDPVDMFPQTPHVESVTVLE 446


>gi|306825259|ref|ZP_07458601.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432695|gb|EFM35669.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 451

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 154/379 (40%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGIIDVEVAETLGMEHPVKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFFIQDPVIDQVIVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q        + K    +DY+ +
Sbjct: 208 IMVILVTTRPKVFRVEQLIEQIIKQFPEIVSVMQNINDQNTNAIFGKEWKTLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N A N++ N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 432 PVDLFPQTHHVECVALLVK 450


>gi|327183079|gb|AEA31526.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1118]
          Length = 448

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 154/386 (39%), Gaps = 40/386 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + ++++ +     E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLKKAHLDDIEVGQTLPSPEQTGYRNKAQVPVREINGQL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107
               F + + + + +  F      I+ +++ +              I  +  +R    + 
Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDILRKYRVPAYDEINHKGEVRYLDVRR 199

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166
              T +    +V L      +D  +   +    +       + L     KT + L + DY
Sbjct: 200 SKATGEIMVILVCLH-----NDFPQLLGVAAEVSQIPGVTGLILNHNPKKTNVILGKKDY 254

Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           +   ++++T     L +R    SF Q N+     + +  +        D+ ++ Y G G 
Sbjct: 255 LVLGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYDLAIKKADLKPSDVVIDAYSGIGT 314

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A+H   V  +E+ + +++ A+ N   N ++N K     ++E      +       
Sbjct: 315 IGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDIDNAKYYLGKAEEIMPRWAK------- 367

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTH 339
                   +   +FVDPPR GL    +          ++YISCNP ++ RDL +     +
Sbjct: 368 -----QGLKTDVVFVDPPRKGLTPEFIDATAKTGPEKVVYISCNPATMVRDLQLFQEQGY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
             +R+   D FP T H+E   +L +K
Sbjct: 423 EFDRIDPVDMFPQTPHVEAVTVLTKK 448


>gi|149181245|ref|ZP_01859743.1| YfjO [Bacillus sp. SG-1]
 gi|148850970|gb|EDL65122.1| YfjO [Bacillus sp. SG-1]
          Length = 467

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 147/390 (37%), Gaps = 41/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    YEQQL EK D L Q +      +L+       I   EP  YR +++F +   
Sbjct: 94  GCQLQHLSYEQQLVEKRDILMQALERHTKFDLEKLDVKPMIGMVEPWFYRNKSQFQLGFR 153

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + I   +               +++   + +      + +++  
Sbjct: 154 DGKIISGLYSLNSHKLVDIPECIVQHPSTNKVTNTVKKILSDFKVPIYNERTKKGIVKTV 213

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++   T +    +VT+       D        +   L   K   Q I     T +   
Sbjct: 214 VTRVGVTTGEVQVVLVTVGKELPRKD---MILSEITKRLPEVKSVAQNINP-KATSLIFG 269

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
            +    Y  E +        Y     +F Q N    +H+   V  A      + L++ YC
Sbjct: 270 NETIHLYGTESIVERLDKFSYELSARAFFQLNPTQTIHLYNEVRDAAALTGHEKLVDAYC 329

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   + L+     +  +++ K  +E AR N     ++N      +++E+    + E  
Sbjct: 330 GVGTIGMWLSNGAKEIRGMDVVKEGIENARKNSKKFGMDNATYEVGTAEEWLPKWKAE-- 387

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPR+G + + +  +        +Y+SCNP +L +DL  LS
Sbjct: 388 ----------GWRPDVVVVDPPRTGCEPSFLNTILKVKPKKFIYVSCNPSTLAKDLKTLS 437

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
            ++ +E +   D FP T H+E    LV K 
Sbjct: 438 KSYDVEYIQPVDMFPQTAHVESVAKLVLKK 467


>gi|256852247|ref|ZP_05557633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           27-2-CHN]
 gi|260661721|ref|ZP_05862632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           115-3-CHN]
 gi|256615293|gb|EEU20484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           27-2-CHN]
 gi|260547468|gb|EEX23447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           115-3-CHN]
          Length = 447

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 161/382 (42%), Gaps = 33/382 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
            +L   +YE+QL  K  ++  ++      +  N  +   E + YR +A+  + +    L 
Sbjct: 80  ASLAHIKYEKQLEFKRQQVINLLEKAHLNKKVNETVASPEEVGYRNKAQVPVRNVKGKLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTS 112
              F + + + + ++ F      I+ +++     +R   +        + ++  ++   S
Sbjct: 140 IGFFRKHSHDLVPMENFFTTDPEIDRVLVATRDILRKNHVPAYDEVKNKGEVRYLEVRRS 199

Query: 113 QSD-QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV--- 167
           +++   +V L+          + A  +     +    + L     KT + L + DY+   
Sbjct: 200 KANSDMMVILVCLHKDFPQLVKVADEISQI--SGVVSVILNHNPKKTNVILGKHDYLLAG 257

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           + ++      + ++    SF Q N+     +    +      + D +++ Y G G   L 
Sbjct: 258 NPQIEDKIGDIRFKISAQSFFQINSLQTPRLYNLAIEKAGLSKKDTVIDAYSGIGTIGLS 317

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +A+H  +V  VEI KP+V+ AR N   N + N + V   ++E       E          
Sbjct: 318 VAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPNWVNE---------- 367

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIER 343
               +   IFVDPPR GL    +   V+  P  I+YISCNP ++ RDL++     +  E 
Sbjct: 368 --GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVRDLTMYQELGYDFEE 425

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP T H+EC  +L +K
Sbjct: 426 ITPVDMFPQTPHVECVTVLEKK 447


>gi|169334084|ref|ZP_02861277.1| hypothetical protein ANASTE_00477 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258801|gb|EDS72767.1| hypothetical protein ANASTE_00477 [Anaerofustis stercorihominis DSM
           17244]
          Length = 450

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/391 (20%), Positives = 147/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEP--IHYRMRAEFHIW---HD 54
             +     YE+QL  K + ++ +      +        S P    YR + EF       D
Sbjct: 79  GCSFQNITYEKQLEFKEEYIKGLFDKAGIEYKEFLPILSSPKDTEYRNKMEFSFGDMEKD 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103
           G     +    +    +  D          ++            I+       E  LR  
Sbjct: 139 GPLCLGMHEKGKHHNIVSTDNCHIVDGDYRSILSKTLEYFTHKKIKHYNKFSKEGTLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRANK 157
           + +    T Q    +VT    ++  + +++  + L         LH           A++
Sbjct: 199 VIRKAMYTGQILVNLVTTSQEKINIEEYKDLLLELNLDGEIVGILHTINDSFSDAVIADE 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LEL 216
            KI   RDY+ E+       L ++    SF Q N   +  +   V       + D+ L+L
Sbjct: 259 VKIIYGRDYIMEK----CLGLDFKISAFSFFQTNTLGSEVLYSVVKDFIGEEKSDVILDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  + +L+   + V  +EI + ++EAA+ N   N+++N + +              
Sbjct: 315 YCGTGTITQILSDKANEVYGIEIVEEAIEAAKINAELNNIDNCRFICGDV---------- 364

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
                L+++D    +   I +DPPR+G+    +  +        +Y+SC   SL RDL  
Sbjct: 365 -----LEEVDKIDVKSDLIILDPPRAGIHPKAIDKIISFKPKKFVYVSCKATSLIRDLPF 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                + ++++   D FP T H+E  VLL +
Sbjct: 420 FIEAGYEVDKVRAVDMFPQTGHVETVVLLTK 450


>gi|225858819|ref|YP_002740329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
 gi|225721367|gb|ACO17221.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
          Length = 453

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 155/386 (40%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           ++++   D FP T H+EC VLL R+ 
Sbjct: 427 LKKVQPVDLFPQTHHVECVVLLQRRN 452


>gi|161507077|ref|YP_001577031.1| RNA methyltransferase [Lactobacillus helveticus DPC 4571]
 gi|260102784|ref|ZP_05753021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           helveticus DSM 20075]
 gi|160348066|gb|ABX26740.1| RNA methyltransferase [Lactobacillus helveticus DPC 4571]
 gi|260083388|gb|EEW67508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           helveticus DSM 20075]
          Length = 450

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 149/385 (38%), Gaps = 40/385 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + N+++       E + YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107
               F + + + M + +F      I+ +++ +              I     +R    + 
Sbjct: 140 EIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNNGEVRYLEVRR 199

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDY 166
              T +    +V L       D  +   +    +       + L     KT + L  +DY
Sbjct: 200 SKSTGEMMVILVCLH-----KDFMQLPNVAAEVSQIPGVSGLILNHNPKKTNVILGPKDY 254

Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           +   ++++T     L +R    SF Q N+     +    +        D+ ++ Y G G 
Sbjct: 255 LVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGT 314

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A+H   V  +E+ + +++ A+ N   N + N K     ++E      +       
Sbjct: 315 IGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRWAK------- 367

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT-H 339
                   +   +FVDPPR GL    +          I+YISCNP +L RDL +     +
Sbjct: 368 -----SGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
              R+   D FP T H+E   +L R
Sbjct: 423 EFNRIDPVDMFPQTPHVESVTVLER 447


>gi|184154533|ref|YP_001842873.1| putative RNA methyltransferase [Lactobacillus fermentum IFO 3956]
 gi|183225877|dbj|BAG26393.1| putative RNA methyltransferase [Lactobacillus fermentum IFO 3956]
          Length = 535

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 139/382 (36%), Gaps = 47/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y++QLA K   + + +  F+            +    P  YR +A+F +      +   +
Sbjct: 169 YDKQLAFKKQVVLEALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQDGHVVAGL 228

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + +                   LI  L I +        +++    +    T
Sbjct: 229 YQTNSHTVVDMQTCAVQMPGTMKIINTLVKLIEELAIPVYNEANQSGIIKTLAVRESLAT 288

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
            Q   AI+T     +   A     + + D L      +Q +          ++T +   +
Sbjct: 289 GQIQVAIITNTAKLIKKHA---LLVAIEDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQ 345

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY+ E L      L +R    SF Q N      + E    A    + D L++ Y G G  
Sbjct: 346 DYITESLM----GLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTI 401

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA    +V+ +E    +V+ A  N   N V N +     ++E     R         
Sbjct: 402 GLSLANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKWRS-------- 453

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341
                   F  + VDPPR+GLD+A +  +  +      Y+SCN  +L R+L+ L  T+ +
Sbjct: 454 ----QGQHFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARNLARLVPTYRV 509

Query: 342 ERLALFDQFPYTRHMECGVLLV 363
             +   D  P T   E  V LV
Sbjct: 510 AYIQPVDMLPQTPRCEAVVKLV 531


>gi|197119265|ref|YP_002139692.1| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem]
 gi|197088625|gb|ACH39896.1| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem]
          Length = 572

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 150/387 (38%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L+  +Y  QLA K   + +    +           I   + + YR  A+  I    +
Sbjct: 201 GCGLMQMRYPAQLAWKKSLVARHFRKYPSLFEVAIRETIGSPKELGYRNTAKLVIAGKNN 260

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLF 105
           D    ++ + T + ++I+       LIN +            +++        LLR  + 
Sbjct: 261 DPVIGIYRRNTHDVLQIEDCALHHPLINKVVKAAKAGIKKGKVQIYNPKSEMGLLRYLVV 320

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           ++     +++Q +V L+      +     A  ++ A+       Q I  +    I   +D
Sbjct: 321 RV---AEKTNQVMVVLVTTDQGYNEMHHLAKFIQQAVPEVSVVAQNINTSTGNVIFGTKD 377

Query: 166 YVD---ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
                 + L       I+    +SF Q N+G    + E V   A       ++++YCG G
Sbjct: 378 RSITKAQTLKAFVGDKIFNLSPHSFFQVNSGAARIIYEKVRELANLKGTERVIDVYCGIG 437

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA     V+ +E  + +V  A  N A NHV N       +      +  E     
Sbjct: 438 GISLYLADQAREVVGIEFVEAAVADATINAALNHVENCHFEAGDAVHLIDEIGEE----- 492

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-T 338
                        I ++PPR G D+  +  V A   P I+Y+SC+P++L RDL ILS   
Sbjct: 493 --------GGADLIVLNPPRKGCDEKVLRSVAAINPPRIIYVSCSPETLARDLDILSGLG 544

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +    +   D FP T H+E   LL +K
Sbjct: 545 YRTVEVQPVDMFPQTVHVEDVALLEKK 571


>gi|294784025|ref|ZP_06749347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           1_1_41FAA]
 gi|294479837|gb|EFG27616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           1_1_41FAA]
          Length = 458

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 160/384 (41%), Gaps = 34/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M     +P+++I       +  +YR +        G+
Sbjct: 86  GCDFAMLKYESQLKYKKLMVEEVMRKIAGLPDIEISDVLASEDVYNYRNKIIEPFSVYGN 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++ E+   +    +        +  L  +  
Sbjct: 146 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNVMI 205

Query: 110 LTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+ V +I    + +  +    RLR+ +   K  I +   + KT   +      
Sbjct: 206 RTNSNNEAMLVLIINSNKITENIKNLLFRLREKIEEIK-SIYISLNSKKTNTVIGDKNIF 264

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y ++ +      + +     SF Q N      + +  +     I    +++ Y G G  
Sbjct: 265 IYGEKSIKENLNGIEFHISPTSFFQINVKQAKRLYDIAINFFDNIDDKYIVDAYSGTGTI 324

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++A+   +V A+EI K + E        N + N++ +  S ++             L 
Sbjct: 325 GMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGSVEK------------ELV 372

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
           ++   + R  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 373 NLINANKRIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 432

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +++L   D FP T H+EC  L+ R
Sbjct: 433 LKKLQAVDMFPQTSHIECVGLIER 456


>gi|238926776|ref|ZP_04658536.1| TrmA family RNA methyltransferase [Selenomonas flueggei ATCC 43531]
 gi|238885308|gb|EEQ48946.1| TrmA family RNA methyltransferase [Selenomonas flueggei ATCC 43531]
          Length = 465

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 144/388 (37%), Gaps = 39/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHIWHDGD 56
              L    YE QL  K  ++   ++    +P + +       EP +YR + +F I  +  
Sbjct: 94  GCQLQHLSYEAQLRTKRAQVADALIHIGKLPQIPVMETLRAEEPWNYRNKMQFPIGRNSG 153

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALM-------IEMMATIRLEPLLRAKLFQIDY 109
            +    F Q +   +  +         N L         ++   +  E   +  L  I  
Sbjct: 154 KIVIGCFAQGSHRIINTENCHIQRAENNDLANAAREIAEQLHIPVYNEDTHKGVLRHIVG 213

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTKICL 162
              +S+  +  ++         ++    +R+ L       Q        +     T++  
Sbjct: 214 RVGRSNDLMAIIVTATKQLPRAKDFVRMMRERLPNLVSVHQNIQTYRNNVIMGRDTQLLW 273

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            R  + + L      L +     SF Q N      + E  L  A       +++ YCG G
Sbjct: 274 GRPTIIDSLGR----LNFHISPRSFFQVNTRQAERLYEQALTYADLHGTETVIDAYCGTG 329

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L LA+   +V  +EI +P++  AR N   N+V N + +   +     A+ +      
Sbjct: 330 TITLFLAQKARKVYGIEIVQPAILDARKNARDNNVKNAEFIVGDATAVMPALYK------ 383

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338
                    R   + VDPPR G  +  +          I+Y+SCNP +L RDL+IL    
Sbjct: 384 ------QGIRPDVVVVDPPRVGCTETVLRTFANMKPQRIVYVSCNPATLARDLAILKELG 437

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366
           +  + +   D FP T H+E   LL ++ 
Sbjct: 438 YLAQEVQPVDLFPQTSHVENVCLLRKQK 465


>gi|302670309|ref|YP_003830269.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302394782|gb|ADL33687.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 475

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 151/383 (39%), Gaps = 35/383 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLY 59
               +ID  Y++QL +K   + +++  +      +   EP HYR +      HD   +  
Sbjct: 108 GACQMIDTPYDKQLRQKHAHVAELLEPYTRVAAFVGMEEPEHYRCKVHAVFTHDKKGNPL 167

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQID 108
             ++ + T + + ID  +      +A+            I+         LLR  L +I 
Sbjct: 168 SGIYREGTHDVVPIDSCLLEDQKADAIITTIRGMLKSFKIKTYDEDNGFGLLRHVLIRIG 227

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165
             T +    +VT+     +  +       L          +  +     + I  D++   
Sbjct: 228 KNTGEIMVVLVTV---SPIFPSKNNFVKALLKEHPEITTIVLNVNDKQTSMILGDKEKAM 284

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFS 224
           Y    +      + ++    SF Q N      +    +   +    ++ L+ Y G G   
Sbjct: 285 YGPGFIYDTCCGMKFKISPKSFYQVNPVQQEVLYNTAIEMAELKGDEVALDCYSGVGTIG 344

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L+ + H   V++VE+   +V+ A+ N   N+V+N+      +  F Q M           
Sbjct: 345 LIASPHVKEVISVELNPDAVKDAKINAKINNVSNITFYENDATRFMQQMAD--------- 395

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341
                 +   +F+DPPRSG     +  M+   P  I+YISC+PDSL RDL ++    + +
Sbjct: 396 ---SGDKADLVFMDPPRSGSTPEFIESMINLSPDKIVYISCSPDSLARDLELITKGGYKV 452

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           ++    D FP+TR +E   LL +
Sbjct: 453 KKAIPVDMFPFTRSIEMVTLLTK 475


>gi|50914683|ref|YP_060655.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10394]
 gi|73920514|sp|Q5XAU1|Y1337_STRP6 RecName: Full=Uncharacterized RNA methyltransferase M6_Spy1337
 gi|50903757|gb|AAT87472.1| tRNA (Uracil-5-) -methyltransferase [Streptococcus pyogenes
           MGAS10394]
          Length = 451

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 144/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L     E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNCSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  +   +N       +++      +      
Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNAYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKIY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|19746533|ref|NP_607669.1| RNA methyltransferase [Streptococcus pyogenes MGAS8232]
 gi|50401605|sp|Q8P017|Y1615_STRP8 RecName: Full=Uncharacterized RNA methyltransferase spyM18_1615
 gi|19748743|gb|AAL98168.1| putative RNA methyltransferase [Streptococcus pyogenes MGAS8232]
          Length = 451

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 144/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L     E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNCSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRTFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  A   +N       +++      +      
Sbjct: 317 SIGFAFAGKVKSVRGMDIISEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|139473396|ref|YP_001128112.1| RNA methyltransferase [Streptococcus pyogenes str. Manfredo]
 gi|134271643|emb|CAM29874.1| putative RNA methyltransferase [Streptococcus pyogenes str.
           Manfredo]
          Length = 451

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 144/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSHRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L     E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLARFIGELTKAFPQVKTVALNSNCSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  +   +N       +++      +      
Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKSMGFDNAYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLETILHYQPKQMVYVSCNTSTLARDLVQLTKIY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|227534726|ref|ZP_03964775.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187482|gb|EEI67549.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 455

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 136/383 (35%), Gaps = 47/383 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D + Q +  F+            I  ++P HYR +A+F +      +   +
Sbjct: 91  YPAQLRFKRDVVAQSLAKFKPTGWTHYDLRPTIGMAQPTHYRNKAQFPVRVIDGHVRAGL 150

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + +  F+               ++  L I +    +   +++  + +  + T
Sbjct: 151 YAPNSHHLIPLTKFLTQAPLTMKVVTTLCQILEQLQIPIYNEKKRSGIVKTLVVRESFAT 210

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
               +  VT I +        E    +   L       Q I           ++++    
Sbjct: 211 K---EVQVTFITNSPKLPHEGELLNGIATQLPMVVSIAQNINPGETSLIWGKESRLLAGL 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
            Y+ E L        ++    +F Q N      +      A   G    L++ YCG G  
Sbjct: 268 PYIQETLL----GRTFQLSPQAFLQLNPKQTETLYTLAAKALDLGPHDTLIDAYCGIGTV 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA+    +  ++     +  A  N  AN + N       +++      +E       
Sbjct: 324 GISLAKGNQPIYGMDTIAEGIADAEANAKANGLTNAHYSVGKAEDIFPKWVQE------- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                  +   + VDPPR+GL+ A +  +     P  +YISCNP +L RDL  L+  + +
Sbjct: 377 -----GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLARDLVFLTKRYKV 431

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   D FP T   E  V   R
Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTR 454


>gi|319744646|gb|EFV96993.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae
           ATCC 13813]
          Length = 468

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 143/379 (37%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YEQQL  K  ++   +         +    +  + P+ YR +A+  +      L    F 
Sbjct: 103 YEQQLLFKQKQVADNLYKIAHISDVLVEPTLGMTIPLAYRNKAQVPVRRVDGQLETGFFR 162

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + +   + I+ ++     I+AL            ++     +   L+R  + +  + T Q
Sbjct: 163 KNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKPYDEEQQSGLIRNLVVRRGHYTGQ 222

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               +VT        D   E   +L  A  +    +Q I     + +   ++    Y  +
Sbjct: 223 LMLVLVTTRPKIFRIDQMIE---KLVSAFPSVVSIMQNIND-RNSNVIFGKEFRTLYGSD 278

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +        Y     SF Q N  +   + +  +  +     D +++ Y G G   L +A
Sbjct: 279 TIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSVA 338

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N   N + N   V  S++       +E            
Sbjct: 339 KQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKE------------ 386

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ V          I YISCN  ++ RD+ +     + + ++ 
Sbjct: 387 GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDIKLFEELGYHLVKIQ 446

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC VLL R
Sbjct: 447 PVDLFPMTHHVECVVLLQR 465


>gi|255505413|ref|ZP_05345917.3| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
 gi|255268319|gb|EET61524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
          Length = 466

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 148/388 (38%), Gaps = 40/388 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG 55
            G  + +  Y +QL  K  ++R  +              I   +P +YR +A++ I  D 
Sbjct: 93  GGCQIQEMDYAEQLRFKEKKVRGNLERIGKFTDIPMEPIIGMEQPFYYRNKAQYPIGKDK 152

Query: 56  DD-LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103
           D  +    +  +T   +       G+ +   +            +          L+R  
Sbjct: 153 DGHIVAGFYAGRTHSIIDNRRCFLGAEVNEEILNIIISYMEKEFVSPYDEKTGRGLVRHV 212

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKI 160
           L +  + T +    ++        ++   E   ++ +          +   +      ++
Sbjct: 213 LIRCGFTTKEIMVCLIVNGTTLPKEEKLVEALRKVPNMTSISINTNREKTNVIMGKDVRL 272

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
              R Y+++ +      + Y+    SF Q N      +    L  A    +  + +LYCG
Sbjct: 273 LWGRPYIEDYIG----NIRYQISPLSFFQVNPVQTEKLYSLALEYAGLTGKETVWDLYCG 328

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  SL LA+   +V  VE+   +++ A  N   N + N +     ++E    + R    
Sbjct: 329 IGTISLFLAQQARQVYGVEVIPQAIDDACRNAKINGIANAQFFVGRAEEILPEVYRR--- 385

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS- 336
                   H    + I VDPPR G DD+ +  +++  P  ++Y+SC+  +L RDL IL  
Sbjct: 386 --------HRIHAEVIVVDPPRKGCDDSLLSTIIEMQPERVVYVSCDSATLARDLRILCD 437

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++R    DQFP + H+E    L +
Sbjct: 438 NGYALKRCRAVDQFPMSVHVETAAQLEK 465


>gi|322374343|ref|ZP_08048857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
 gi|321279843|gb|EFX56882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
          Length = 455

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 155/380 (40%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        PI YR +A+  +      L    F 
Sbjct: 91  YPEQLKFKTKQVKDSLYKIAGIRDVEVAETLGMEHPIQYRNKAQVPVRRVNGVLETGFFR 150

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 151 KNSHDLMPLEDFFIQDPVIDQVVVILRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 210

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q        + KI   +DY+ +
Sbjct: 211 IMVILVTTRPKVFRVEQLIEQLIKQFPEIVSVMLNINDQNTNAIFGKEWKILYGQDYITD 270

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +    D+ ++ Y G G   L +A
Sbjct: 271 QMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKADDVVIDAYSGIGTIGLSVA 326

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N A N++ N   V  +++   +   +E            
Sbjct: 327 KHVKEVYGVEVIPEAVENSQKNAALNNITNAHYVCDTAENAMRNWLKE------------ 374

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 375 GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 434

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC  LLV++
Sbjct: 435 PVDLFPQTHHVECVSLLVKR 454


>gi|71904022|ref|YP_280825.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS6180]
 gi|71803117|gb|AAX72470.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pyogenes
           MGAS6180]
          Length = 451

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 145/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F         +P HYR + +F +   
Sbjct: 81  GCQIMHLAYPKQLDFKDDVIRQALKKFKPTGYEQFEIRPTLGMKKPDHYRAKLQFQLRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
           G  +   +F Q +   + ID  +    L   I   + +++   +L      K+  I  + 
Sbjct: 141 GGTVKAGLFSQGSYRLVPIDNCLVQDQLTQDIINKITQLVDKYKLPIYNERKIAGIRTIM 200

Query: 111 -----TSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICL 162
                 S   Q IV       L +   E        +                ++T+I  
Sbjct: 201 VRKAQASDQVQIIVVSSKEVRLANFIGELTKAFPQVKTVALNSNRSKSSEIYGDETEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +   G  L       +F Q N      +  E V A   G +  +++ YCG G
Sbjct: 261 GQEAIHEEVLDYGFAL----SPRAFYQLNPQQTEVLYGEVVKALDVGSKDHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +     A     V  ++I   ++E A+ N  A   +N       +++      +      
Sbjct: 317 SIGFAFAGKVKSVRGMDIIPEAIEDAQKNAKAMGFDNAYYEAGKAEDIIPKWYK------ 370

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   I VDPPR+GLDD  +  +       ++Y+SCN  +L RDL  L+  +
Sbjct: 371 ------QGYRADAIIVDPPRTGLDDKLLKTILHYQPKQMVYVSCNTSTLARDLVQLTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLQKR 450


>gi|323467070|gb|ADX70757.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
           helveticus H10]
          Length = 458

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 150/388 (38%), Gaps = 40/388 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    + N+++       E + YR +A+  +      L
Sbjct: 82  ASLAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQL 141

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107
               F + + + M + +F      I+ +++ +              I     +R    + 
Sbjct: 142 EIGFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNNGEVRYLEVRR 201

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDY 166
              T +    +V L       D  +   +    +       + L     KT + L  +DY
Sbjct: 202 SKSTGEMMVILVCLH-----KDFMQLPNVAAEVSQIPGVSGLILNHNPKKTNVILGPKDY 256

Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
           +   ++++T     L +R    SF Q N+     +    +        D+ ++ Y G G 
Sbjct: 257 LVFGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGT 316

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A+H   V  +E+ + +++ A+ N   N + N K     ++E      +       
Sbjct: 317 IGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRWAK------- 369

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT-H 339
                   +   +FVDPPR GL    +          I+YISCNP +L RDL +     +
Sbjct: 370 -----SGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367
              R+   D FP T H+E   +L R  +
Sbjct: 425 EFNRIDPVDMFPQTPHVESVTVLKRTKN 452


>gi|297205587|ref|ZP_06922983.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii
           JV-V16]
 gi|297150165|gb|EFH30462.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii
           JV-V16]
          Length = 481

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 160/382 (41%), Gaps = 33/382 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
            +L   +YE+QL  K  ++  ++      +  N  +   E + YR +A+  + +    L 
Sbjct: 114 ASLAHIKYEKQLEFKRQQVINLLEKAHLNKKVNETVASPEEVGYRNKAQVPVRNVKGKLE 173

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTS 112
              F + + + + ++ F      I+ +++     +R   +        + ++  ++   S
Sbjct: 174 IGFFRKHSHDLVPMENFFTTDPEIDRVLVATRDILRKNHVPAYDEVKNKGEVRYLEVRRS 233

Query: 113 QSD-QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV--- 167
           +++   +V L+          + A  +     +    + L     KT + L + DY+   
Sbjct: 234 KANSDMMVILVCLHKDFPQLVKVADEISQI--SGVVSVILNHNPKKTNVILGKHDYLLAG 291

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           + ++      + ++    SF Q N+     +    +      + D +++ Y G G   L 
Sbjct: 292 NPQIEDKIGDIRFKISAQSFFQINSLQTPRLYNLAIEKAGLSKKDTVIDAYSGIGTIGLS 351

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +A+H  +V  VEI KP+V+ AR N   N + N + V   ++E       E          
Sbjct: 352 VAKHVKQVYGVEIVKPAVQDARENALLNGIENAEYVCGKAEELMPNWVNE---------- 401

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIER 343
               +   IFVDPPR GL    +   V+  P  I+YISCNP ++ RDL++     +  E 
Sbjct: 402 --GMKADVIFVDPPRKGLTPEFIEASVKTNPQKIVYISCNPATMVRDLTMYQELGYDFEE 459

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP T H+E   +L +K
Sbjct: 460 ITPVDMFPQTPHVESVTVLEKK 481


>gi|76787486|ref|YP_329132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae A909]
 gi|77406057|ref|ZP_00783133.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
 gi|76562543|gb|ABA45127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae A909]
 gi|77175337|gb|EAO78130.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
          Length = 451

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/388 (21%), Positives = 153/388 (39%), Gaps = 42/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  QY++QL  K D +RQ ++ F+    +       I   EP HYR + +F +   
Sbjct: 81  GCQIMHLQYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMPEPEHYRAKLQFQVRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111
           G ++   ++ Q T   + I   +    L   ++    E++   +L      K+  +  + 
Sbjct: 141 GGNVKAGLYAQGTHRLIDIKDCLVQDSLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200

Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160
            +    S +  +  I  + LD  + +  I L       K     I  +         T++
Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219
              ++ ++E +   G +L       +F Q N      +  E V A       DL++ YCG
Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKDDDDLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L  A     V  ++I   +++ A+ N       N       +++       E   
Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALHMGFTNTHYEAGKAEDIIPRWYSE--- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
                     +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+ 
Sbjct: 372 ---------GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTK 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP+T   E  V L RK
Sbjct: 423 VYHVHYIQSVDMFPHTARTEAVVKLQRK 450


>gi|332638388|ref|ZP_08417251.1| RNA methyltransferase [Weissella cibaria KACC 11862]
          Length = 496

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 142/384 (36%), Gaps = 47/384 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y+ QL  K D +RQ +  ++    +       I   EP  YR +A+F +      L   M
Sbjct: 130 YDGQLEFKRDVIRQALEKYKPEGYEQFDLRPTIGMDEPDGYRNKAQFPVREVNGQLAVGM 189

Query: 63  FDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           + + + + + +                   ++  + + +    +   +++  + ++   T
Sbjct: 190 YKRNSHDLVDLPKVSTQHPATLKVVRKVRDILADMEMPIYNERKNSGIVKTLIARVSETT 249

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
                 IVT   +    D   E   R+   L       Q I            TK+    
Sbjct: 250 GDVQLTIVTNGKYLPSAD---ELIARINQELPEVVSVHQNINSDKTSLVWGEDTKLLWGS 306

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           +Y+ E +        ++    +F Q N      +    ++A    Q D L++ Y G G  
Sbjct: 307 EYITETINGK----TFKLSPRAFLQLNPRQTQRLYNEAISALDLTQADKLIDAYSGVGTI 362

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA H   V  ++    +++ A  N   N V N      ++++       E       
Sbjct: 363 GITLADHAGEVRGMDTVPEAIDDANENALDNGVKNAAYYTGAAEDLIPRWANE------- 415

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDAT-VGMVQAYP-HILYISCNPDSLCRDLSILSTTHTI 341
                 +    + VDPPR+GLD+   + ++   P   +Y+SCN  +L RDL  L+  + +
Sbjct: 416 -----GWVADALVVDPPRTGLDEELRLTILDTQPDKFVYVSCNASTLARDLVDLTRVYNV 470

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           E +   D FP T   E  V   +K
Sbjct: 471 EYIQSIDMFPQTARWEGIVKFTKK 494


>gi|146295523|ref|YP_001179294.1| RNA methyltransferase [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145409099|gb|ABP66103.1| 23S rRNA m(5)U-1939 methyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 452

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 154/385 (40%), Gaps = 40/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L+  +Y+ QL  K   +          + +I        P  YR +    +  D   
Sbjct: 80  GCHLMHAKYQHQLKLKKLLVEDAFRRIGKLSPRINDVIGMENPFRYRNKTALPVGGDYKK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
                + + T + + IDY +               LI    IE+    + + +LR  + +
Sbjct: 140 PQIGFYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKHKIEVYDEKKHKGVLRHIVVR 199

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             +     D+ ++ L+  ++ ++        L +   ++   + L     +T + L  + 
Sbjct: 200 NSFA---FDEMMIILVCTKVPENLETIKKDILNNF--SKIKSLYLNLNPKRTNVILGDED 254

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
              +    +      L +     SF Q N+     +   V+   + I  + + ++Y G G
Sbjct: 255 ILIWGSSTIKDRIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIVFDVYSGIG 314

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             S+ +A    +V  +EI + +VE A+ +   N ++N++ +   ++              
Sbjct: 315 TISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICGRAE------------IE 362

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
           +  +  +    + + +DPPRSG +   +  +     P+I+Y+SCNP +L RD SIL S  
Sbjct: 363 IPKLLKNGIIPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILFSNG 422

Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363
           + I  +   D FP T H+EC VL+ 
Sbjct: 423 YEILEVQPVDMFPQTFHVECVVLMT 447


>gi|227893050|ref|ZP_04010855.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           ultunensis DSM 16047]
 gi|227865163|gb|EEJ72584.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           ultunensis DSM 16047]
          Length = 450

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 151/385 (39%), Gaps = 40/385 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +YE+QL  K +++  ++    + ++++ +     E   YR +A+  +      L
Sbjct: 82  ASLAHIKYEKQLVFKRNQVVNLLKKAHLDDIEVGQTLASPEQKGYRNKAQVPVREVKGKL 141

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQI 107
               F + + + + +  F      I+ +++ +              I  +  +R    + 
Sbjct: 142 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVAVRDVLRRNQVPAYDEIHNKGEVRYLDVRR 201

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DY 166
              T +    +V L      +D  +   +    +       I L     KT + L + DY
Sbjct: 202 SKATGEIMVILVCLH-----NDFVQLPRVAAEISQIPGVTSIILNHNPKKTNVILGQKDY 256

Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           V   D+ +T     L +R    SF Q N+     +    +        D++ + Y G G 
Sbjct: 257 VVYGDDHITDQIGNLKFRISPKSFFQINSLQTPRLYNLAIEKADLKPSDVVVDAYSGIGT 316

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +A+H   V  +E+   +V  A  N   N+++N K V   ++E      +E      
Sbjct: 317 IGLSVAKHVKAVRGMEVIADAVRDANANAKLNNISNAKYVTGKAEEIMPHWAKE------ 370

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
                   +   +FVDPPR GL    +          ++YISCNP ++ RDL +     +
Sbjct: 371 ------GLKTDVVFVDPPRKGLTPEFIDATVKTGPKKVVYISCNPATMIRDLQLFKEQGY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
             +R+   D FP T H+E   +L +
Sbjct: 425 QFDRIDPVDMFPQTPHVEAVTILTK 449


>gi|293115663|ref|ZP_05792525.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
 gi|292808836|gb|EFF68041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
          Length = 366

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 150/379 (39%), Gaps = 36/379 (9%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHIMFD 64
           +  +Y + L  K   + +++  F   N  I   EP  YR +    +  D   ++Y   ++
Sbjct: 1   MGKKYSESLEYKQKMIEKLIRPFCKVNKIIGMDEPYFYRNKVHAVVGGDRKGNIYAGTYE 60

Query: 65  QQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLL----RAKLFQIDYLTSQ-SDQ 116
             + + + ID  +  +     I A +I++M + +  P      R  L  I   T++ + +
Sbjct: 61  AGSHKIVPIDKCLLDNEKADAIIATVIKLMKSFKYRPYNEDTGRGFLRHILIRTAEVTGE 120

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDE 169
            +VTL+    +  +       L          +  +           K +    + Y+++
Sbjct: 121 IMVTLVVGENIFPSKSNFIKALTAEHPEITTIVMNVNSKRTSMVLGEKEETLYGKGYIED 180

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228
            L        +R    SF Q N      +    +  A    + ++ + Y G G   +  +
Sbjct: 181 ILCGK----RFRISSKSFYQVNHEQTEKLYNIAIGYAALTGKENVFDAYSGIGTIGICAS 236

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
            +   V  VE+ + +V+ A  N   N++ NVK +   + E             ++     
Sbjct: 237 DNALSVTGVELNRDAVKDALTNCKLNNLKNVKFMAGDAGE------------HMEKEAAS 284

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             ++  +F+DPPRSG     +  V   A   ++YISC P+SL RDL +     + +    
Sbjct: 285 GRKYDVVFMDPPRSGSSLKFINSVCKMAPSKVVYISCGPESLARDLQLFKKKGYRVVECQ 344

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D F +T H+EC VLL +
Sbjct: 345 PVDMFGWTGHVECVVLLTK 363


>gi|149003890|ref|ZP_01828713.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP14-BS69]
 gi|237650085|ref|ZP_04524337.1| RNA methyltransferase [Streptococcus pneumoniae CCRI 1974]
 gi|237822146|ref|ZP_04597991.1| RNA methyltransferase [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758120|gb|EDK65124.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP14-BS69]
          Length = 541

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + + + M ++ F     +I+ +++ +   IR              L+R  + +  
Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLIRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D++ + Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFVELKKDDVIIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N + N + N   V  +++   +   +E       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|77406146|ref|ZP_00783219.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
 gi|77175269|gb|EAO78065.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
          Length = 453

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 142/381 (37%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YEQQL  K  ++   +         +    +  + P+ YR +A+  +      L    F 
Sbjct: 88  YEQQLLFKQKQVADNLYKIAHISDVLVEPTLGMTIPLAYRNKAQVPVRRVDGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + +   + I+ ++     I+AL            ++     +   L+R  + +  + T Q
Sbjct: 148 KNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKPYDEEQQSGLIRNLVVRRGHYTGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               +VT        D   E   +L  A  +    +Q I     + +   ++    Y  +
Sbjct: 208 LMLVLVTTRPKIFRIDQMIE---KLVSAFPSVVSIMQNIND-RNSNVIFGKEFRTLYGSD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +        Y     SF Q N  +   + +  +  +     D +++ Y G G   L +A
Sbjct: 264 TIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N   N + N   V  S++       +E            
Sbjct: 324 KQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ V          I YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDIKLFEELGYHLVKIQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D FP T H+EC  LL R  
Sbjct: 432 PVDLFPMTHHVECVALLQRSK 452


>gi|306829492|ref|ZP_07462682.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
 gi|304428578|gb|EFM31668.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
          Length = 452

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 155/380 (40%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 88  YSEQLKFKTKQVKDSLYKIAGIRDIEVAETLGMDHPVKYRNKAQVPVRRVNGILETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + +   M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHYLMPLEDFFIQDPVIDQVVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHHSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     +        + K    +DY+ +
Sbjct: 208 IMVIMVTTRPKVFRVEQLIEHLIKQFPEIVSVMQNINDRNTNAIFGKEWKTLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N A N++ N   V  +++            N +K+    
Sbjct: 324 KHVKEVYGVEVIAEAVENSQKNAALNNITNAHYVCDTAE------------NAMKNWFKE 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPSVILVDPPRKGLTESFIKASAQTGANRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC  LLV++
Sbjct: 432 PVDLFPQTHHVECVSLLVKR 451


>gi|296877010|ref|ZP_06901054.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432045|gb|EFH17848.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 15912]
          Length = 450

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 144/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D L+Q +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLKYDKQLEFKTDLLQQALKKFSPEGFEQYDIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
              +   ++ Q +   + +   +    +I A+  ++   +    +          +R  +
Sbjct: 141 KGQVKAGLYAQNSHYLVELKDCLVQDPVIQAIANDLADLLTYYQIPIADERKELGVRTMM 200

Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    + Q    +VT   I  + L +        +      +           +T+I  
Sbjct: 201 IRRARKSGQVQIIVVTSRQINVKNLVEDLVTKHPEIVTVAVNKNTSRSSEIYGEQTQIIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
             + + E +        +     +F Q N      +  E V A     +  L++ YCG G
Sbjct: 261 GEEAILEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSPEDHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A     V  ++I   ++E A+YN       N      +++E      +E     
Sbjct: 317 TIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPRWYQE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GL    +  +   A   ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRANAVIVDPPRTGLGTKLIETLLHYAPEKMVYVSCNVSTLARDLVALTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E +   D FP+T   E  V LV+K
Sbjct: 425 QVEYIQSVDMFPHTARTEAVVKLVKK 450


>gi|331266416|ref|YP_004326046.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
 gi|326683088|emb|CBZ00705.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
          Length = 452

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGIIDVEVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q        + K    +DY+ +
Sbjct: 208 IMVILVTTRPKIFRVEQLIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWKTLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N   N ++N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNAELNGISNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELRKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC   L +
Sbjct: 432 PVDLFPQTHHVECVSYLEK 450


>gi|315613133|ref|ZP_07888043.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315314695|gb|EFU62737.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 452

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 155/380 (40%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 88  YSEQLKFKTKQVKDSLYKIAGITDVEVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFFIQDPVIDQVVVVLRDLLRRFDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L D   +    +   +     Q        + +    +DY+ +
Sbjct: 208 IMVILVTTRPKIFRVEQLIDQLIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMFGND----FQIAGPAFYQVNTQMAEKLYQTAIDFAELREDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N A N++ N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEMIPEAVENSQKNAALNNITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC  LLV++
Sbjct: 432 PMDLFPQTHHVECVSLLVKR 451


>gi|22298485|ref|NP_681732.1| putative RNA methyltransferase [Thermosynechococcus elongatus BP-1]
 gi|50401571|sp|Q8DKB7|Y942_THEEB RecName: Full=Uncharacterized RNA methyltransferase tlr0942
 gi|22294665|dbj|BAC08494.1| tlr0942 [Thermosynechococcus elongatus BP-1]
          Length = 449

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 75/377 (19%), Positives = 146/377 (38%), Gaps = 42/377 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QLA K   ++  +        Q F        P  YR +  + +      +    + 
Sbjct: 90  YATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPFGYRNKVTYPLGRRHGAVVAGYYQ 149

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY------LTSQSDQAI 118
           + +   + ++        +N L+  +   ++  P+ R +  +  +      +  ++ + +
Sbjct: 150 KGSHHLVNLNQCPVQDPRLNPLLAALKQALQPWPIYREQTHEPGFRHLGLRIGQRTGEQL 209

Query: 119 VTLIYHRLL-------DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
           +TL+    L        + W +    +        + +      ++T++   R Y+ E +
Sbjct: 210 ITLVLAGPLPAGLAAEAEGWLQRFQGVIGVCVNFNHHVGNRIFGDETQVLAGRPYLWEEM 269

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARH 230
                 + ++    +F Q N      ++  +        Q  L++LYCG G  SL LA  
Sbjct: 270 A----GVRFQIASTTFFQVNTAQAEQLVTTLRDWIAPTGQERLVDLYCGVGTLSLPLAGA 325

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V+ VE+   SV+ A  N   N +NN   V   ++E+     +               
Sbjct: 326 VAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWLPRYDQAV------------- 372

Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS--TTHTIERLAL 346
               + +DPPR G D A +  +     P +LY+SC+P +L RDL+ L    T+ + ++  
Sbjct: 373 --DVLILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCSTGTYQLAKIQP 430

Query: 347 FDQFPYTRHMECGVLLV 363
            D FP T H+E   LL 
Sbjct: 431 LDMFPQTAHVETIALLT 447


>gi|323141153|ref|ZP_08076054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414296|gb|EFY05114.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Phascolarctobacterium
           sp. YIT 12067]
          Length = 456

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 153/387 (39%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L    Y+ QL  K  +++  +      NL+    +  +EP  YR + +F    D + 
Sbjct: 85  GCQLQHLSYKGQLECKRQQVQDALTRIGHLNLEALPVLGAAEPWSYRNKMQFPAAADAEG 144

Query: 58  LYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLF 105
           +     +   T   +  D  M      NA+M  +   ++            + L+R  + 
Sbjct: 145 VLQIGCYATATHSVVDTDACMISKEANNAIMKTVRTWMQHYNISAYDEKTGKGLVRHIMG 204

Query: 106 QIDYLTSQSDQAIVT---LIYHRLLDDAWRECAI-RLRDALHARKYQIQLIGRANKTKIC 161
           ++   + +    I+T    I HR +   W +  +  L   +     +   +   +KT++ 
Sbjct: 205 RVGVHSGEVMAVIITSGYDIPHRGVLIEWLKRHVPGLVSVVQNINKKQTNVVMGSKTRVL 264

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
              + + + L     +L +     +F Q N+     +    L  A    +  ++++YCG 
Sbjct: 265 YGPESIKDSLG----SLSFHISAQAFFQVNSEQAEKLYNKALEFAALSGKETVVDVYCGT 320

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL LARH  +V  +EI  P++E A+ N   N   N + +   +              
Sbjct: 321 GTISLYLARHAKQVYGIEIVAPAIENAKKNAEENKCANAEFICGDAA------------V 368

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST- 337
            L  +     R   + VDPPR+G +   +  +       ++Y+SCNP SL RDL+ +   
Sbjct: 369 ELPKLLAGGVRPDVVVVDPPRAGCEQKVLAAIAEVQPERVVYVSCNPASLARDLAFMEQH 428

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +        D FP T H+EC  LL R
Sbjct: 429 GYKAIVAQPVDMFPMTSHVECVTLLTR 455


>gi|257451727|ref|ZP_05617026.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|317058286|ref|ZP_07922771.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 3_1_5R]
 gi|313683962|gb|EFS20797.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 3_1_5R]
          Length = 453

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 163/387 (42%), Gaps = 34/387 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   ++++M      N       I   E  HYR +          
Sbjct: 80  GCDFAMAKYEAQLQYKTAMVKEVMERIGKLNSNLVLDCIASPEEKHYRNKVIEPFSKHKG 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDY 109
            +    F +++ E   ++  M  S L N ++            ++  E   +  L  I  
Sbjct: 140 KIITGFFQRRSHEVFEVEENMLNSKLGNKIIETFKQYANQEKLSVYDEKKHQGLLRNIMI 199

Query: 110 LTSQSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ S +A++ LI   + ++++ ++  +++   +   K  I L     KT + L      
Sbjct: 200 RTNSSQEAMLVLIVNAKKIEESLKKILLQMPKNIPELK-SIYLSLNTRKTNVVLGDKNIC 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
            + ++ L      + +    +SF Q N     H+ E  L+    I+  ++++ Y G G  
Sbjct: 259 IWGEKTLKEELFGIHFHISPSSFFQINVPQTKHLYEKALSLIPKIENKNVVDAYSGTGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            ++L+R   +V A+EI + +          NH++N++ +    +          E +RL 
Sbjct: 319 GMLLSRKAKKVYAIEIVESASRDGAKTAKENHIDNIEFICGPVE---------VELDRLL 369

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
           +          I  DPPR G++++ +  V     P ++YISCNP +L RDL I++   + 
Sbjct: 370 E---EGKNLDAIVFDPPRKGIEESILRKVAEVGIPEMVYISCNPSTLARDLKIMAECGYQ 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +  FD FP T H+EC  L+ R  S
Sbjct: 427 VGEIQPFDMFPQTSHVECIALIQRVKS 453


>gi|182418140|ref|ZP_02949440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
           5521]
 gi|237666196|ref|ZP_04526183.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377958|gb|EDT75498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
           5521]
 gi|237658286|gb|EEP55839.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 454

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 148/392 (37%), Gaps = 45/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             TL    YE QL  K  R++  +         + N  I       YR + +F +     
Sbjct: 80  GCTLQHLSYEGQLDYKFSRVKDCIRKIGGLDESIVNYPIGMDGVYRYRNKVQFPVGLVNG 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEP-----------LLRA 102
            L    F +++ E + +D  +     S  I +++   M    + P           L+R 
Sbjct: 140 KLSIGFFSEKSHEIIDMDTCLLQDEESERIVSIIRNWMNEYSIMPAKKDGKLFKNGLVRH 199

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            + +  + T +    +VT          L D+       ++  +     +   +    K 
Sbjct: 200 IVIRKAFKTDEVMVILVTTNKKIPYVNELIDSLNSNNNSIKSIVQNINDKDTNLVMGEKC 259

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
                 DY+ + +        +     SF Q N      +    L     + GD  + + 
Sbjct: 260 ITLWGSDYICDYIG----EYKFNISPLSFFQVNPVQTEVLYNKALE-YADLNGDEIVFDA 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  SL L++   +V  VEI   +++ A+ N   N++NN +     S+E        
Sbjct: 315 YCGTGTISLFLSQKAKKVYGVEIIPQAIDNAKVNAEINNINNAEFFVGKSEEI------- 367

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334
                +  +         I VDPPR G D   +  +       I+Y+SC+P +L RDL+ 
Sbjct: 368 -----IPKLIDDGIIPDVIVVDPPRKGCDSKLLDALGKAKPKKIVYVSCDPSTLARDLNY 422

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L S  +  E +   D FP T+H+E   LLV+K
Sbjct: 423 LESKGYKTEEVQPVDMFPMTKHVENVALLVKK 454


>gi|182683977|ref|YP_001835724.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14]
 gi|182629311|gb|ACB90259.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae
           CGSP14]
          Length = 541

 Score =  265 bits (677), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D++ + Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFVELKKDDVIIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N + N + N   V  +++   +   +E       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|15900900|ref|NP_345504.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4]
 gi|111658257|ref|ZP_01408949.1| hypothetical protein SpneT_02000571 [Streptococcus pneumoniae
           TIGR4]
 gi|50401653|sp|Q97R12|Y1029_STRPN RecName: Full=Uncharacterized RNA methyltransferase SP_1029
 gi|14972502|gb|AAK75144.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae TIGR4]
          Length = 543

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D++ + Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N + N + N   V  +++   +   +E       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|291542511|emb|CBL15621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus bromii
           L2-63]
          Length = 454

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 135/388 (34%), Gaps = 41/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56
             T     YE++   K  R+   +      +  +F+          YR +A++ +  D D
Sbjct: 82  GCTWRHISYEEECKIKQQRVEDAVTRIGGLDNVVFKPIISSDNITRYRNKAQYPVGLDRD 141

Query: 57  DLYH-IMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
                  +   +   +     +    +           I     E+      +  LR   
Sbjct: 142 GNVVTGFYSFHSHRIINCTDCILQPEIFARVIEITKDFIAKTNTEIYDETTGKGRLRHIY 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +I  ++ +     V        +D        L+  L   K  I +     KT + L R
Sbjct: 202 IRIGEVSGELMVCYVVNANGLKQEDL---LVKMLKSELPQLKSVI-INSNREKTNVVLGR 257

Query: 165 ----DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
                Y  + +T     L ++    SF Q N      +             + LL+LYCG
Sbjct: 258 KNRTIYGSDHITDTLCGLQFKISPFSFWQINRKQAEKLYGKAKEYANLKSDEILLDLYCG 317

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +A    +++  EI + +V+ A  N  AN + N + +   +      + +E   
Sbjct: 318 TGTIGLTMADSCKQLIGAEIVEDAVKDANENAKANGIENARFICGDASAAAFQLEKE--- 374

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                      +   + +DPPR G  +  V  +       ++Y+SC+P +L RDL   + 
Sbjct: 375 ---------GLKPDCVILDPPRKGCGEELVKTISRMLPSRVVYVSCDPATLARDLKFFTE 425

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364
             +T + +   D F  T H+E   L+ R
Sbjct: 426 NGYTPKEITPCDMFSGTSHVESVALIER 453


>gi|238855408|ref|ZP_04645719.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3]
 gi|260665351|ref|ZP_05866199.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           SJ-7A-US]
 gi|282932081|ref|ZP_06337538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
 gi|313473079|ref|ZP_07813563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           1153]
 gi|238832006|gb|EEQ24332.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3]
 gi|239528690|gb|EEQ67691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           1153]
 gi|260560855|gb|EEX26831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           SJ-7A-US]
 gi|281303760|gb|EFA95905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
          Length = 447

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 157/382 (41%), Gaps = 33/382 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
            +L   +Y++QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  ASLAHIKYDKQLDFKRQQVINLLEKAHLNKKVNATVASPEETGYRNKAQVPVRKVKGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTS 112
              F + + + + ++ F      I+ +++     +R   +        + ++  ++   S
Sbjct: 140 IGFFRKHSHDLVPMENFFTTDPEIDRVLVATRDILRKNHIPAYDEVKNKGEVRYLEVRRS 199

Query: 113 QS-DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV--- 167
           ++  + +V L+          + A  +     +    + L     KT + L + DY+   
Sbjct: 200 KANGEMMVILVCLHKDFPQLAKVADEISQI--SDVVSVILNHNPKKTNVILGKHDYLLSG 257

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           + ++      + ++    SF Q N+     +    +        D +++ Y G G   L 
Sbjct: 258 NPQIEDKIGDVCFKISAQSFFQINSLQTPRLYNLAIEKAGLTSDDTVIDAYSGIGTIGLS 317

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +A+H   V  VEI KP+V+ A+ N   N + N   V   ++E   +   E          
Sbjct: 318 VAKHVKSVRGVEIVKPAVQDAKENALLNGIENADYVCGKAEELMPSWVSE---------- 367

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIER 343
               +   IFVDPPR GL    +   V+  P  I+YISCNP ++ RDL++     +  E 
Sbjct: 368 --GMKADVIFVDPPRKGLTLEFIEASVKTNPQKIVYISCNPATMVRDLTMYQDLGYDFEE 425

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP T H+EC  +L +K
Sbjct: 426 ITPVDMFPQTPHVECVTVLEKK 447


>gi|307706544|ref|ZP_07643351.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           SK321]
 gi|307617999|gb|EFN97159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           SK321]
          Length = 451

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 154/379 (40%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMENPVKYRNKAQVPVRRVNGILETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFFIQDPVIDEVVVVLRDLLRRYDLKPYDEKEQAGLIRNLVVRRGHYSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q        + +    +DY+ +
Sbjct: 208 IMVILVTTRPKVFRVEQLIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        Y+    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----YQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N   N+++N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYDLKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 432 PVDLFPQTHHVECVALLVK 450


>gi|225386438|ref|ZP_03756202.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme
           DSM 15981]
 gi|225047456|gb|EEG57702.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme
           DSM 15981]
          Length = 506

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/426 (21%), Positives = 151/426 (35%), Gaps = 76/426 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------------------- 29
              L +  YE QL  K  ++   +                                    
Sbjct: 98  GCQLQMMDYEAQLRFKERKIYNNLKRIGGMENLRLPGEECGSEDEGAGTGERAGADGRKI 157

Query: 30  -VPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRIDYFMPG---SLLIN 84
                 +   EP  YR +A+F         +    +  +T   +  +  + G   +  I 
Sbjct: 158 VRMEPIMGMEEPWRYRNKAQFPFGMSKDGRVITGFYAGRTHSIIENEDCLLGVEENREIL 217

Query: 85  ALMIEMMATIRLEP--------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
            ++ E M    ++P        L+R  L +  + T +    +V        D+   E   
Sbjct: 218 RIVREFMEEFGVKPYDEEGHRGLVRHCLIRKGFATGEIMVCLVVNGRKLPKDEVLVE--- 274

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNA 192
           RLR         I L     KT + L  +    +    +T     + Y+    SF Q N 
Sbjct: 275 RLRQVDGM--TSISLCVNTEKTNVILGDEVVNLWGPGYITDYIGDVKYQISPLSFYQVNP 332

Query: 193 GINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
              V +    L    G+ G+  + +LYCG G  SL LA+   +V  VEI   ++E AR N
Sbjct: 333 AQTVKLYGTALE-YAGLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQAIEDARRN 391

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N + NV+     ++E        REF               I VDPPR G D+  + 
Sbjct: 392 AKINGIENVEFFVGKAEEVLP-----REFEE------KQIYADVIVVDPPRKGCDEVCLD 440

Query: 311 MV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL-----L 362
            +       ++Y+SC+  +L RD+  L      +ER+   D F  + H+E  ++     +
Sbjct: 441 TIVKMGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVIMMQNCGM 500

Query: 363 VRKPSG 368
           VRK  G
Sbjct: 501 VRKSRG 506


>gi|256752408|ref|ZP_05493268.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748743|gb|EEU61787.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 452

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 161/391 (41%), Gaps = 47/391 (12%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGD 56
            G +  +  Y  QL  K D +++++    + + +   I +S   H YR + E+    D +
Sbjct: 78  GGCIYQNVDYSDQLKIKEDIVKKLLEKEGIRDYEFLRIVKSPKEHGYRNKMEYTFGKDKE 137

Query: 57  DLYHIMFDQQT---------KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ- 106
               +   ++          K  +  D F+    L     I+       +   +  L   
Sbjct: 138 GNEVLGLHRKGRFYEVVMTDKCNIVDDDFLKALNLTFDYAIKKGLPFYDKKTHKGFLRHL 197

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGRANK 157
           +    S++ + ++ ++    L+  ++E            RL   LH +           K
Sbjct: 198 VVRKASKAGEILLNIVTTTQLEHDFKELIEIYKNVDFESRLVGVLHTQNDSWSDAVVCEK 257

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
             +   +DY+ E L      L ++    SF Q N+     + E V      +    + +L
Sbjct: 258 LNVLYGKDYLIEELL----GLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDL 313

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G   +++A    +V+ +E+ + +V +AR N   N + N   +     +        
Sbjct: 314 YSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFIAGDVSK-------- 365

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSI 334
               +LK+I         + VDPPRSG++   +  +++  P  ++Y+SCNP+SL RDL I
Sbjct: 366 ----KLKEI---KEMPDVVIVDPPRSGINPKALEDIIKFNPQKVVYVSCNPESLARDLKI 418

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364
            S   + ++++   D FP+T H+EC  L+ +
Sbjct: 419 FSEGGYKVDKVKCVDMFPHTYHVECVTLMSK 449


>gi|307703903|ref|ZP_07640844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
 gi|307622738|gb|EFO01734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
          Length = 379

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 151/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 16  YPEQLKFKTKQVKDSLYKIAGIRDVEVAETLGMEHPVKYRNKAQVPVRRVNGVLETGFFR 75

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 76  KNSHDLMPLEDFFIQDPMIDEVVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 135

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q          +    +DY+ +
Sbjct: 136 IMVILVTTRPKVFRVDQLIEQLIKQFPEIVSVVQNINDQNTNAIFGKDWRTLYGQDYITD 195

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +    D+ ++ Y G G   L +A
Sbjct: 196 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELKGDDVVIDAYSGIGTIGLSVA 251

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N + N + N   V  +++   +   +E            
Sbjct: 252 KHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTAENAMKNWLKE------------ 299

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 300 GIQPTAILVDPPRKGLTESFIKAGSQTGADRIAYISCNVATMARDIKLYQELGYELKKIQ 359

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 360 PVDLFPQTHHVECVALLVK 378


>gi|227514178|ref|ZP_03944227.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC
           14931]
 gi|227087458|gb|EEI22770.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus fermentum ATCC
           14931]
          Length = 474

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 138/379 (36%), Gaps = 41/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y++QLA K   + + +  F+            +    P  YR +A+F +      +   +
Sbjct: 108 YDKQLAFKKQVVLEALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQDGHVVAGL 167

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + +                   LI  L I +        +++    +    T
Sbjct: 168 YQADSHTVVDMQTCAVQMPGTMKVINTLVKLIEELAIPVYNEANQSGIIKTLAVRESLAT 227

Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
            Q   AI+T    LI    L  A  +    +   +         +   ++T +   +DY+
Sbjct: 228 GQIQVAIITNTAKLIKKHALLVAIEDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYI 287

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            E L      L +R    SF Q N      + E    A    + D L++ Y G G   L 
Sbjct: 288 TESLM----GLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLS 343

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA    +V+ +E    +V+ A  N   N V N +     ++E     R            
Sbjct: 344 LANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKWRS----------- 392

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
                F  + VDPPR+GLD+A +  +  +      Y+SCN  +L R+L+ L  T+ +  +
Sbjct: 393 -QGQHFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYI 451

Query: 345 ALFDQFPYTRHMECGVLLV 363
              D  P T   E  V LV
Sbjct: 452 QPVDMLPQTPRCEAVVKLV 470


>gi|312623225|ref|YP_004024838.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203692|gb|ADQ47019.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 451

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 153/388 (39%), Gaps = 38/388 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L+  +Y+ QL+ K   +          + +I        P  YR +    +  D   
Sbjct: 80  GCHLMHAKYQHQLSLKKLLVEDAFRRIGKLSPKINDVIGMENPFRYRNKTALPVGGDYKK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
                + + T + + IDY +               LI    IE+    + + +LR  + +
Sbjct: 140 PQIGFYKKMTHDIVDIDYCLIQHEFCDNVIKGMKDLIRKHKIEVYDEKKHKGVLRHIVVR 199

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
             +     ++ ++ L+  + + +        + D     K     +       I  + D 
Sbjct: 200 NSFA---FNEMMLILVCTK-VPENLEAIKNDILDKFPEIKSFFVNLNPKRTNVILGEEDI 255

Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           +      +      L +     SF Q N+     +   V+   + I+ +++ ++Y G G 
Sbjct: 256 LIWGNSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYRQVVKYLRNIEAEVVFDIYSGIGT 315

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            S+ +AR   +V A+E+ + +VE A+ +   N ++N++ +  S++              +
Sbjct: 316 ISMFVARFCKKVYAIELVRDAVEDAKKSSKNNSISNIEFICGSAE------------IEI 363

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTH 339
             +       + + +DPPRSG +   +  +  +   +I+Y+SCNP +L RD +IL    +
Sbjct: 364 PKLLKSGIIPQAVILDPPRSGCEKQLLESLIEHKIQNIIYVSCNPSTLARDANILCSNGY 423

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367
            +  +   D FP T H+EC  L  +  S
Sbjct: 424 EVVEVQPVDMFPQTFHVECVTLFKKCNS 451


>gi|312794361|ref|YP_004027284.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181501|gb|ADQ41671.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 451

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 151/386 (39%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L+  +Y+ QL  K   +          + +I        P  YR +    +  D   
Sbjct: 80  GCHLMHAKYQHQLKLKKLLVEDAFRRIGKLSPKINDVIGMENPFRYRNKTALPVGGDYVK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
                + + T + + IDY +               LI    IE+    + + +LR  + +
Sbjct: 140 PQIGFYRKMTHDIVPIDYCLIQHEFCDDVIKGMKELIKKHKIEVYDERKHQGVLRHIVVR 199

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
             +     D+ ++ L+  + + +        + D     K     +       I  + D 
Sbjct: 200 NSFA---FDEMMLILVCTK-VPENLEVIKKDILDKFPKIKSFFVNLNPKRTNVILGEEDI 255

Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           +      +      L +     SF Q N+     +   V+   K I  + + ++Y G G 
Sbjct: 256 LIWGSSTIKDKIGNLTFEISPKSFFQVNSLQTEVLYSQVVKYLKDIDAEIVFDVYSGIGT 315

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            S+ +A    +V A+EI + +VE A+ +   N+++N++ +  S++          E  RL
Sbjct: 316 ISMFVAPFCKKVYAIEIVEDAVEDAKKSSKNNNISNIEFICGSAE---------IEIPRL 366

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339
               I     + + +DPPR G +   +  +     P+I+Y+SCNP +L RD +IL    +
Sbjct: 367 MKSGII---PQAVILDPPRRGCEKELLESLIEHKIPNIIYVSCNPSTLARDSNILCSNGY 423

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            I  +   D FP T H+EC  L  ++
Sbjct: 424 EILEVQPVDMFPQTFHVECVALFKKR 449


>gi|260662594|ref|ZP_05863489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           fermentum 28-3-CHN]
 gi|260553285|gb|EEX26228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           fermentum 28-3-CHN]
          Length = 474

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 138/379 (36%), Gaps = 41/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y++QLA K   + + +  F+            +    P  YR +A+F +      +   +
Sbjct: 108 YDKQLAFKKQVVLEALAKFKPLGYRHYWVKDTLAAPHPYGYRNKAQFQVRMQDGHVVAGL 167

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + +                   LI  L I +        +++    +    T
Sbjct: 168 YQANSHTVVDMQTCAVQMPGTMKVINTLVKLIEELAIPVYNEANQSGIIKTLAVRESLAT 227

Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
            Q   AI+T    LI    L  A  +    +   +         +   ++T +   +DY+
Sbjct: 228 GQIQVAIITNTAKLIKKHALLVAIEDQLPEVTSVVQNVNPGDTPLVWGDETTLLYGQDYI 287

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            E L      L +R    SF Q N      + E    A    + D L++ Y G G   L 
Sbjct: 288 TESLM----GLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYAGIGTIGLS 343

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA    +V+ +E    +V+ A  N   N V N +     ++E     R            
Sbjct: 344 LANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKWRS----------- 392

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
                F  + VDPPR+GLD+A +  +  +      Y+SCN  +L R+L+ L  T+ +  +
Sbjct: 393 -QGQHFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARNLARLVPTYRVAYI 451

Query: 345 ALFDQFPYTRHMECGVLLV 363
              D  P T   E  V LV
Sbjct: 452 QPVDMLPQTPRCEAVVKLV 470


>gi|325679453|ref|ZP_08159035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
 gi|324108852|gb|EGC03086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
          Length = 397

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 144/386 (37%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60
            G  L + Y+ QL  K  +  +M+  F   N  +   +P +YR + +     D    +  
Sbjct: 23  GGCQLDEPYKDQLERKQQKADRMLSKFAPVNRILPMEKPYNYRCKVQNIYGLDRSKRIIS 82

Query: 61  IMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEP--------LLRAKLFQIDY 109
            ++    ++ + +D           I   + ++M  +R+ P        +LR  L +   
Sbjct: 83  GVYQSSGQKIVAVDDCFLEDERAAPIVRSVKKLMKDMRIPPYDIRSGRGILRHTLIRTSR 142

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
            T Q    +VT      +  A       +R A       +Q I           +  +  
Sbjct: 143 STGQVMLVLVTAG---AMLPAKNNLVKAMRAAHPEITTIVQNICPDGMPLTLGERDIVLF 199

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNG 221
            + Y+++ L        +R    SF Q N      +    + A    +G  +++ YCG G
Sbjct: 200 GKGYIEDELC----GCRFRISPASFYQVNPLQTEKLYSCAVEAAGISEGVRVIDAYCGTG 255

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              ++ A++   V  VE+ K +   A  N   N + N+K     + +F QAM        
Sbjct: 256 TIGIICAKNGAEVTGVELNKSACRDAHKNAELNGLENIKFCNDDAGKFMQAMAS------ 309

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
                        + +DPPR+G     +G     A   I+Y+SC  ++L RDL       
Sbjct: 310 ------KGEGCDVLIMDPPRAGASREFIGCAGRLAPQKIVYVSCKIETLERDLKAFRREG 363

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +  +   D FP+T  +E   LL R
Sbjct: 364 YKVTYIQPVDMFPHTMGIETVCLLER 389


>gi|300361143|ref|ZP_07057320.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri
           JV-V03]
 gi|300353762|gb|EFJ69633.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri
           JV-V03]
          Length = 448

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 157/383 (40%), Gaps = 34/383 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    +  +++       E   YR +A+  +     +L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLHKADLDKIKVSQTLPSPEETGYRNKAQVPVREVHGEL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111
               F + + + + +  F      I+ ++I++   +R   +        + ++  +D   
Sbjct: 140 DIGFFRKHSHDLVPLTNFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLDVRR 199

Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167
           S+ + + +V L+         ++    + +        + L     KT + L + DY+  
Sbjct: 200 SKATGEIMVILVCLHKDFPQLKKVTKEISEI--EGVTSVVLNHNPKKTNVILGKKDYLLW 257

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
            + ++T     + ++    SF Q N+     + +  +        D+ ++ Y G G   L
Sbjct: 258 GEPQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+H   V  +E+ KP+V+ A  N   N + N + V   ++E      +E         
Sbjct: 318 SVAKHVKAVRGMEVIKPAVDDANANAKLNGIMNAEYVVGKAEEVMPRWAKE--------- 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIE 342
                +   IFVDPPR GL    V          I+YISCNP ++ RDL +     +   
Sbjct: 369 ---GLKTDVIFVDPPRKGLTPEFVDAAVETDPKKIVYISCNPATMVRDLQLFREQGYDFN 425

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP T H+E   +L +K
Sbjct: 426 EIDPVDMFPQTPHVEAVTVLEKK 448


>gi|77411137|ref|ZP_00787490.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           CJB111]
 gi|77162860|gb|EAO73818.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           CJB111]
          Length = 451

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 143/379 (37%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YEQQL  K  ++   +         +    +  + P+ YR +A+  +      L    F 
Sbjct: 88  YEQQLLFKQKQVADNLYKIAHISDVLVEPTLGMTIPLAYRNKAQVPVRRVDGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + +   + I+ ++     I+AL            ++     +   L+R  + +  + T Q
Sbjct: 148 KNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKPYDEEQQSGLIRNLVVRRGHYTGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               +VT        D   E   +L  A  +    +Q I     + +   ++    Y  +
Sbjct: 208 LMLVLVTTRPKIFRIDQMIE---KLVSAFPSVVSIMQNIND-RNSNVIFGKEFRTLYGSD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +        Y     SF Q N  +   + +  +  +     D +++ Y G G   L +A
Sbjct: 264 TIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N   N + N   V  S++       +E            
Sbjct: 324 KQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ V          I YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDIKLFEELGYHLVKIQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 432 PVDLFPMTHHVECVALLVK 450


>gi|171779969|ref|ZP_02920873.1| hypothetical protein STRINF_01756 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281317|gb|EDT46752.1| hypothetical protein STRINF_01756 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 454

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 148/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  ++   +     + ++++        P  YR +A+  +      L    F 
Sbjct: 88  YAEQLKFKRKQVADNLYKTAGISDVEVLETLGMEHPYAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + M I  F   +  I+ L     +++    L+P        L+R  + +  + +  
Sbjct: 148 KHSHDLMPISDFYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++  +  R       +   ++       K  +Q I   N T      D    Y  +
Sbjct: 207 --EMMLVFVTTRPKIFRIEQIIEKIVAEFPVVKSVVQNINDKN-TNAIFGNDFRTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +  +     Y     SF Q N  +   + +  +  +     D +++ Y G G   L  A
Sbjct: 264 TIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTADDTVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           ++   V  VE+ + +V+ A+ N A N + N   V  S++       ++            
Sbjct: 324 KNVKAVYGVEVIEEAVKDAKRNAALNGITNAHYVADSAEHAMATWSKD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL +  +   V   P  + YISCNP ++ RD+ +     + ++++ 
Sbjct: 372 GIKPSVILVDPPRKGLTENFIKASVAMQPEKVTYISCNPATMARDIKLYQELGYKLQKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E  VL+ R
Sbjct: 432 PVDLFPNTHHVETVVLMSR 450


>gi|22536806|ref|NP_687657.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
 gi|25010677|ref|NP_735072.1| hypothetical protein gbs0613 [Streptococcus agalactiae NEM316]
 gi|76788448|ref|YP_329346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae A909]
 gi|76799166|ref|ZP_00781348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae 18RS21]
 gi|77407748|ref|ZP_00784502.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
 gi|50401576|sp|Q8E0T7|Y633_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0633
 gi|50401578|sp|Q8E6F5|Y613_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0613
 gi|22533652|gb|AAM99529.1|AE014220_1 RNA methyltransferase, TrmA family [Streptococcus agalactiae
           2603V/R]
 gi|23095031|emb|CAD46257.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563505|gb|ABA46089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae A909]
 gi|76585475|gb|EAO62051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae 18RS21]
 gi|77173614|gb|EAO76729.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
          Length = 451

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 143/379 (37%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YEQQL  K  ++   +         +    +  + P+ YR +A+  +      L    F 
Sbjct: 88  YEQQLLFKQKQVADNLYKIAHISDVLVEPTLGMTIPLAYRNKAQVPVRRVDGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           + +   + I+ ++     I+AL            ++     +   L+R  + +  + T Q
Sbjct: 148 KNSHTLVSIEDYLIQEKEIDALINFTRDLLRKFDVKPYDEEQQSGLIRNLVVRRGHYTGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
               +VT        D   E   +L  A  +    +Q I     + +   ++    Y  +
Sbjct: 208 LMLVLVTTRPKIFRIDQMIE---KLVSAFPSVVSIMQNIND-RNSNVIFGKEFRTLYGSD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +        Y     SF Q N  +   + +  +  +     D +++ Y G G   L +A
Sbjct: 264 TIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDFSDLNSEDIVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  A+ N   N + N   V  S++       +E            
Sbjct: 324 KQVKHVYGVEVVEKAVSDAKENATRNGITNSTYVADSAENAMAKWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ V          I YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDIKLFEELGYHLVKIQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 432 PVDLFPMTHHVECVALLVK 450


>gi|116491644|ref|YP_811188.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
           PSU-1]
 gi|290891253|ref|ZP_06554315.1| hypothetical protein AWRIB429_1705 [Oenococcus oeni AWRIB429]
 gi|116092369|gb|ABJ57523.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
           PSU-1]
 gi|290479217|gb|EFD87879.1| hypothetical protein AWRIB429_1705 [Oenococcus oeni AWRIB429]
          Length = 458

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 149/385 (38%), Gaps = 40/385 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L+   Y  QL  K  ++RQ+     + +L+I        P HYR +    +      L  
Sbjct: 90  LVNLSYPAQLEFKRKQIRQLFHKVGIDDLEILPTLGMKNPTHYRNKTVVPVKFQAGKLVT 149

Query: 61  IMFDQQTKERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAKLFQIDY 109
             + + + + + I+ +      I           N   I     I  E ++R  + +  Y
Sbjct: 150 GFYRRGSHKLVPIEDYYLNDPKIDVVVGIARDVLNDFHISAYNEISREGIVRYLMVRHGY 209

Query: 110 LTSQSDQAIVTLIYHRLLD-DAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRD 165
            + Q+  A+V    H   + +  +E   R+ D    L     +   +      ++   + 
Sbjct: 210 HSGQTMLAVVATKKHLPHEKEIIKEINQRIPDLTSFLLNYNPKQTNVQLGLDNRVLSGQQ 269

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
            + + L      L +    NSF Q N      +               +++ Y G G   
Sbjct: 270 VIHDTLL----GLDFEIGINSFYQVNPQTTAVLYTKAAELAGLKSNQLVIDAYSGIGTIG 325

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L +AR   +V+ VE+  P+VE A+ N+ AN + N + +   + E         +F +  D
Sbjct: 326 LSIARQVRKVIGVEVVVPAVEDAKKNMLANRIENAEYIAADAAE---------QFIKWAD 376

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTI 341
                 +   +FVDPPR GL    +  +   A    +YISCNP +L RD  ++    + I
Sbjct: 377 ---AGVKPDVVFVDPPRKGLTSDLIQSLGVMAPLKFVYISCNPATLARDAVLIKEQGYRI 433

Query: 342 ERLA-LFDQFPYTRHMECGVLLVRK 365
            +     DQFP T H+E   +  ++
Sbjct: 434 SKAVLPIDQFPQTMHVESITVFEKE 458


>gi|312128413|ref|YP_003993287.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778432|gb|ADQ07918.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 451

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 152/385 (39%), Gaps = 38/385 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L+  +Y+ QL+ K   +          + +I       +P  YR +    +  D   
Sbjct: 80  GCHLMHAKYQHQLSLKKLLVEDAFRRIGKLSPKINDVIGMEKPFRYRNKTALPVGGDYKK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
                + + T + + IDY +               +I    IE+    + + +LR  + +
Sbjct: 140 PQIGFYKKMTHDIVDIDYCLIQHEFCDDVIKGMKEMIKKHKIEVYDERKHQGVLRHIVVR 199

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
             +     D+ ++ L+  + + +        + D     K     +       I  D D 
Sbjct: 200 NSFA---FDEMMLILVCAK-VPENLEAIKKDILDKFPKIKSLYLNLNPKRTNVILGDEDI 255

Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           +      +      L +     SF Q N+     +   V+   + I+ +++ ++Y G G 
Sbjct: 256 LIWGSSTIKDKIGNLTFEISPKSFFQVNSVQTEVLYSQVVKYLRNIEAEVVFDIYSGIGT 315

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            S+ +A    +V A+EI + +VE A+ +   N ++N++ +   ++              +
Sbjct: 316 ISMFIAPFCKKVYAIEIVEDAVEDAKKSSKNNSISNIEFICGCAE------------IEI 363

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTH 339
             +       + + +DPPRSG +   +  +  +   +I+Y+SCNP +L RD +IL S  +
Sbjct: 364 PKLLKSGIIPQAVILDPPRSGCEKELLESLIEHKISNIIYVSCNPSTLARDANILYSGGY 423

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I  +   D FP T H+EC  L  +
Sbjct: 424 EILEVQPVDMFPQTFHVECVALFKK 448


>gi|307704726|ref|ZP_07641623.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597]
 gi|307621705|gb|EFO00745.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597]
          Length = 452

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 155/386 (40%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVSETLGMENPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + + + M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDEVVVGLRDLLRRYDLKPYDEKEQAGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    R
Sbjct: 203 HYSGQIMVILVTTRPKIFRVDQLIEQLIKQFPDITSVMQNINDQNTNSIFGKEWRTLYGR 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           D++ +++        Y+    +F Q N G+   + +  +      + D+ ++ Y G G  
Sbjct: 263 DFITDQMLGND----YQIAGPAFYQVNTGMAEKLYQTAIDFAALKEDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   NH++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYRELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           ++++   D FP T H+EC  LL ++ 
Sbjct: 427 LKKVQPVDLFPQTHHVECVSLLEKRN 452


>gi|149006286|ref|ZP_01829998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP18-BS74]
 gi|307127423|ref|YP_003879454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 670-6B]
 gi|147762063|gb|EDK69025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP18-BS74]
 gi|306484485|gb|ADM91354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 670-6B]
          Length = 543

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 154/390 (39%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + + + M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D++ + Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|300172623|ref|YP_003771788.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887001|emb|CBL90969.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
          Length = 498

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/390 (21%), Positives = 142/390 (36%), Gaps = 47/390 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QLA K D L Q +  FQ            I    P  YR +A+F +   G  
Sbjct: 128 LEHMTYPAQLAFKKDVLVQSLEKFQPRGWSDYDLRDTIGMENPYEYRNKAQFPVRKIGKK 187

Query: 58  LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106
           L   M+ + + + + +                   L++ L + +    +    ++  + +
Sbjct: 188 LSIGMYKRGSHDLVDLPVVHTQDPITMKVLRTIRELLDKLSVSIYNEDKNHGTVKTIVVR 247

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTK 159
           + + T +     VT       D A       +  AL       Q            ++T 
Sbjct: 248 VSHTTGEVQLTFVTNTDGFPGDTA---LITAINQALPEVTGIFQNFNPGRTSLVWGDETI 304

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
               +DY++E +        ++    +F Q N      +  E +LA        L++ Y 
Sbjct: 305 KLWGKDYIEETVMGK----TFQLSPRAFMQLNYTQMAVVYKEALLALDLTHADKLVDAYA 360

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +EI   +V+ A  N   NH+ N +    +++E     + E  
Sbjct: 361 GVGTIGLSLADKVGEVRGMEIIPEAVDDANINAKINHIENAQYEVGTAEELFPKWQSE-- 418

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                      +    + VDPPR+GLD A    +        +YISCN  +L RDL  L+
Sbjct: 419 ----------GWLADALVVDPPRTGLDTALRREILRTKPEKFVYISCNASTLARDLVDLT 468

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + ++ +   D FP T   E  V L R+ 
Sbjct: 469 KAYKVDYIQSIDMFPQTARWEGVVKLTRRD 498


>gi|225861011|ref|YP_002742520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230452|ref|ZP_06964133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255322|ref|ZP_06978908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502952|ref|YP_003724892.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225726771|gb|ACO22622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238547|gb|ADI69678.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|332201499|gb|EGJ15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA47368]
          Length = 543

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 154/390 (39%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + + + M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|296329282|ref|ZP_06871783.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153638|gb|EFG94455.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 543

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 159/390 (40%), Gaps = 34/390 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M     + +++I       +  +YR +         +
Sbjct: 80  GCDFAMLKYESQLKYKRLMVEEVMRKIAGLSDIEISDVLASEDIYNYRNKIIEPFSIYNN 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++ E+   +    +        R  L  I  
Sbjct: 140 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISIYDENTHRGLLRNIMI 199

Query: 110 LTSQSDQAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+V LI +   + +  ++    LR+ +   K  I +   + KT   +      
Sbjct: 200 RTNSNNEAMVVLIINFNKITENIKKLLFNLRENIEEIK-SIYISLNSKKTNTVIGEKNIL 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y ++ +      + +     SF Q N      + +  ++    I    +++ Y G G  
Sbjct: 259 IYGEKSIKENINGIEFHISPTSFFQINVKQAKKLYDIAISFFDDIDDKYIVDAYSGTGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++A+   +V A+EI K + E        N + N++ +  + ++             L 
Sbjct: 319 GMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAVEK------------ELV 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
            +  ++ +   I  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 367 KLINNNKKIDIIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDIKLFSEKGYV 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           +++L   D FP T H+E   LL +     H
Sbjct: 427 LKKLQAVDMFPQTSHIETVALLSKLDVDKH 456


>gi|293365360|ref|ZP_06612077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
 gi|291316810|gb|EFE57246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
          Length = 451

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 151/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGIRDVEVAETLGMEHPVKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFFIQDPMIDEVVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q          +    +DY+ +
Sbjct: 208 IMVILVTTRPKVFRVDQLIEQLIKQFPEIVSVVQNINDQNTNAIFGKDWRTLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +    D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELKGDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N + N + N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSQKNASINGITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTAILVDPPRKGLTESFIKAGSQTGADRIAYISCNVATMARDIKLYQELGYELKKIQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 432 PVDLFPQTHHVECVALLVK 450


>gi|225854529|ref|YP_002736041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae JJA]
 gi|225722765|gb|ACO18618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae JJA]
          Length = 543

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 154/390 (39%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + + + M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|168487479|ref|ZP_02711987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569696|gb|EDT90224.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1087-00]
          Length = 543

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|194397238|ref|YP_002037663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae G54]
 gi|194356905|gb|ACF55353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae G54]
          Length = 543

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D++ + Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|148994234|ref|ZP_01823527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP9-BS68]
 gi|168488850|ref|ZP_02713049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP195]
 gi|168576242|ref|ZP_02722136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae MLV-016]
 gi|147927375|gb|EDK78406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP9-BS68]
 gi|183572483|gb|EDT93011.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP195]
 gi|183577973|gb|EDT98501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae MLV-016]
 gi|332073360|gb|EGI83839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA17570]
          Length = 543

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|148998851|ref|ZP_01826287.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|307067795|ref|YP_003876761.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|147755278|gb|EDK62329.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP11-BS70]
 gi|301794164|emb|CBW36574.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104]
 gi|306409332|gb|ADM84759.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
          Length = 543

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 151/390 (38%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        +      +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWCTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N + N + N   V  +++   +   +E       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|148984983|ref|ZP_01818226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922681|gb|EDK73798.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799994|emb|CBW32584.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
          Length = 543

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|322388962|ref|ZP_08062533.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 903]
 gi|321144331|gb|EFX39738.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
           ATCC 903]
          Length = 450

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 143/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D L+Q +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLKYDKQLEFKTDLLQQALKKFSPEGFEQYDIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            D +   ++ Q +   + +   +    +I A+  ++   +    +          +R  +
Sbjct: 141 KDQVKAGLYAQNSHYLVELKDCLVQDPVIQAIANDLADLLTYYQIPIADERKELGVRTMM 200

Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    + Q    +VT   I    L          +      +           +T+I  
Sbjct: 201 VRRARKSGQVQIIVVTSRQINVNNLVQDLVTKHPEIVTVAVNKNTSRSSEIYGEQTQIIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
             D + E +        +     +F Q N      +  E V A     +  L++ YCG G
Sbjct: 261 GEDAILEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSSEDHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A     V  ++I   ++E A+YN       N      +++E      +E     
Sbjct: 317 TIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPRWYQE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GL    +  +   A   ++Y+SCN  +L RDL  L+  +
Sbjct: 372 -------GYRANAVIVDPPRTGLGTKLIETLLHYAPEKMVYVSCNVSTLARDLVALTKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E +   D FP+T   E  V LV+K
Sbjct: 425 QVEYIQSVDMFPHTARTEAVVKLVKK 450


>gi|319757720|gb|ADV69662.1| hypothetical protein SSUJS14_0565 [Streptococcus suis JS14]
          Length = 453

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 147/379 (38%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QLA K  ++   +              +    P+ YR +A   +      L    F 
Sbjct: 88  YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDSPLAYRNKAAVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + + I+ F      I+AL++   +++  + L+P        L+R  + +  + + Q
Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169
               +VT    R           RL          +Q I   N T     +++      E
Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFRLLHGSE 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +        +     SF Q N  +   + +  +   +    D+ ++ Y G G   L  A
Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  ++ N A N ++NV  V  S++   Q    +            
Sbjct: 324 KQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   IFVDPPR GL ++ +    +     I+YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC VLL R
Sbjct: 432 PADLFPNTHHVECVVLLQR 450


>gi|225856683|ref|YP_002738194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae P1031]
 gi|225725093|gb|ACO20945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae P1031]
          Length = 543

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMM-----------ATIRLEPLLRAKLFQID 108
              F + + + M ++ F     +I+ +++ +                   L+R  + +  
Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRGLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|166033376|ref|ZP_02236205.1| hypothetical protein DORFOR_03102 [Dorea formicigenerans ATCC
           27755]
 gi|166027733|gb|EDR46490.1| hypothetical protein DORFOR_03102 [Dorea formicigenerans ATCC
           27755]
          Length = 378

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 140/366 (38%), Gaps = 42/366 (11%)

Query: 23  QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHIMFDQQTKERMRIDYFMPGSL 81
            ++ A+      I    P +YR +       D   ++   ++++ T   + ++  +    
Sbjct: 32  SLLGAYGKVCPIIGMENPYYYRNKVHAVFDRDRKGNIISGIYEEGTHRVVPVENCLIEDE 91

Query: 82  LINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
               +            I          LLR  L +  + T    + +V L+    +  +
Sbjct: 92  KSQEIIRTIRGMLKSFKIRTYDEDTGYGLLRHVLIRRGFSTG---EIMVVLVTGSPIFPS 148

Query: 131 WRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDERLTVAGRTLIYRQI 183
                  LR A       +  +          ++ K      ++ +RL       ++R  
Sbjct: 149 KNNFVKALRKAHPEITTVVLNVNDRQTSMVLGDREKPIFGPGFIKDRLC----GCMFRIS 204

Query: 184 ENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             SF Q N      + +  +  A    +  +++ YCG G   L+ A+   +V+ VE+ K 
Sbjct: 205 PKSFYQVNPVQTAILYQTAIDYAGLTGKETVIDAYCGIGTIGLIAAKKAGKVIGVELNKD 264

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V+ AR N   N + N    +  +  F   M                 +   +F+DPPR+
Sbjct: 265 AVKDARINAKENKITNAAFYQGDAGRFMVEMAA------------KGEKADVVFMDPPRA 312

Query: 303 GLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECG 359
           G D+  +  V   +   ++YISCNP++L RDL  L+   + +E++   D FP+  H E  
Sbjct: 313 GSDERFLSSVVKLSPKKVIYISCNPETLARDLKYLTKHHYKVEKIQPVDMFPFCDHCETV 372

Query: 360 VLLVRK 365
             LVRK
Sbjct: 373 CELVRK 378


>gi|148988481|ref|ZP_01819928.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP6-BS73]
 gi|147926162|gb|EDK77236.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP6-BS73]
          Length = 543

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLDMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D++ + Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N + N + N   V  +++   +   +E       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|168491923|ref|ZP_02716066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC0288-04]
 gi|221231781|ref|YP_002510933.1| RNA methyltransferase [Streptococcus pneumoniae ATCC 700669]
 gi|183573799|gb|EDT94327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC0288-04]
 gi|220674241|emb|CAR68776.1| putative RNA methyltransferase [Streptococcus pneumoniae ATCC
           700669]
          Length = 543

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLDMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D++ + Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N + N + N   V  +++   +   +E       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSQKNASLNKITNAHYVCDTAENAMKKWLKE------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|195978633|ref|YP_002123877.1| RNA methyltransferase TrmA family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225868040|ref|YP_002743988.1| RNA methyltransferase [Streptococcus equi subsp. zooepidemicus]
 gi|195975338|gb|ACG62864.1| RNA methyltransferase TrmA family [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225701316|emb|CAW98335.1| putative RNA methyltransferase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 455

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 146/386 (37%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    +       +  +EP HYR + +F     
Sbjct: 81  GCQIMHLAYPKQLYFKDDIIRQALKKFKPKGYEDFEIRHTLGMAEPQHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
           G  +   +F + +   + ID  +    L  A++  +   +    +          +R  +
Sbjct: 141 GGSVKAGLFSEGSHRLVAIDDCLVQDQLTQAIVNRVTQLLDRHRIPIYNERRVAGIRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    + Q     V+    RL  L         ++R                 KT+I  
Sbjct: 201 VRRAQASDQVQLIFVSSKEVRLAGLIAELTAAFPQIRTVALNINASKTSDIYGAKTEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            ++ + E +     +  +     +F Q N      +   V+ A      + +++ YCG G
Sbjct: 261 GQETIQEEVL----SYSFALSPRAFYQLNPKQTEVLYSQVVQALDPTAEEHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +  L +A     V  ++I   ++  AR N  A   +N       ++E   +   E     
Sbjct: 317 SIGLAVADKVRSVRGMDIIPEAIADARKNAQALGFDNAYYETGKAEELIPSWYAE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLQTILHYQPAKMIYVSCNTSTLARDLVSLVQVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVIYIQSVDMFPHTARTEAVVKLQKR 450


>gi|320546279|ref|ZP_08040599.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
           9812]
 gi|320449056|gb|EFW89779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
           9812]
          Length = 450

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 140/386 (36%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D + Q +  F+    +       +    P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLEFKDDLIAQSLKKFKPAGYENYEIRHTLGMDVPYHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
             ++   +F++ +   + I        L   ++  +   +    +          +R  +
Sbjct: 141 KGNVKAGLFEEGSHRLVDIKECFVQDELTQKIINRVAQLLEKHQVPIYDERKIAGIRTVM 200

Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    T +     +T   ++   +  A       ++                 KT++  
Sbjct: 201 IRKAKATGEVQIIFITSRDVFLAPVIKALTAEFKEIKGIALNFNRSKSSEIYGEKTEVIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
               + E +        +     +F Q N      +    +AA    + D +++ YCG G
Sbjct: 261 GNADISEEVL----DYQFSLSPRAFYQLNPEQTQVLYSQAVAALDVTENDNIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A     V  ++I   ++E A+ N      +N       +++      +E     
Sbjct: 317 TIGFAFAGRVKSVRGMDIIPEAIEDAKKNAQRMGFDNTYYEAGRAEDIIPKWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  LS  +
Sbjct: 372 -------GYRADALVVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V LVRK
Sbjct: 425 DVNYIQSVDMFPHTARTEAVVKLVRK 450


>gi|300813136|ref|ZP_07093513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300495890|gb|EFK31035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 448

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 152/384 (39%), Gaps = 42/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDLYH 60
           L   +Y++QL  K  ++++++    +  +++  + P      YR +A+  +      L  
Sbjct: 82  LAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPLETGYRNKAQVPVRMVKGQLEI 141

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109
             F + + + + ++ F      I+ +++ +   +R + +           +R    +   
Sbjct: 142 GFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRRGT 201

Query: 110 LTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            T      +V L       H ++D+      +  +        +   +           +
Sbjct: 202 ATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLWGK 259

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
            Y+D+++      L +     SF Q N+     + +  +      + DL+ + Y G G  
Sbjct: 260 RYIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGTI 315

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E       
Sbjct: 316 GLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE------- 368

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL    +          ++YISCNP +L RD+ +L    +T
Sbjct: 369 -----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYT 423

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
            + ++  D FP T H+E  VL+ R
Sbjct: 424 TDLVSPVDMFPQTPHVETVVLMSR 447


>gi|118586769|ref|ZP_01544205.1| RNA methyltransferase, TrmA family [Oenococcus oeni ATCC BAA-1163]
 gi|118432762|gb|EAV39492.1| RNA methyltransferase, TrmA family [Oenococcus oeni ATCC BAA-1163]
          Length = 458

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 148/385 (38%), Gaps = 40/385 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYH 60
           L+   Y  QL  K  ++RQ+     + +L+I        P HYR +    +      L  
Sbjct: 90  LVNLSYPAQLEFKRKQIRQLFHKVGIDDLEILPTLGMKNPTHYRNKTVVPVKFQAGRLVT 149

Query: 61  IMFDQQTKERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAKLFQIDY 109
             + + + + + I+ +      I           N   I     I  E ++R  + +  Y
Sbjct: 150 GFYRRGSHKLVPIEDYYLNDPKIDVVVGIARDVLNDFHISAYNEISREGIVRYLMVRHGY 209

Query: 110 LTSQSDQAIVTLIYHRLLD-DAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRD 165
            + Q+  A+V    H   + +  +E   R+ D    L     +   +      ++   R 
Sbjct: 210 HSGQTMLAVVATKKHLPHEKEIIKEINQRIPDLTSFLLNYNPKQTNVQLGLNNRVLSGRQ 269

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
            + + L      L +    NSF Q N      +        +      +++ Y G G   
Sbjct: 270 VIHDTLL----GLDFEIGINSFYQVNPQTTAVLYTKAAELAELKSNQLVIDAYSGIGTIG 325

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L +AR   +V+ VE+  P+VE A+ N+ AN + N + +   + E            +   
Sbjct: 326 LSIARQVRKVIGVEVVAPAVEDAKKNMLANRIENAEYIAADAAE------------QFIK 373

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTI 341
                 +   +FVDPPR GL +  +  +   A    +YISCNP +L RD  ++    + I
Sbjct: 374 WAAAGVKPDVVFVDPPRKGLTNDLIQSLGVMAPLKFVYISCNPATLARDAVLIKEQGYRI 433

Query: 342 ERLA-LFDQFPYTRHMECGVLLVRK 365
            +     DQFP T H+E   +  ++
Sbjct: 434 SKAVLPIDQFPQTMHVESITVFEKE 458


>gi|312867279|ref|ZP_07727489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parasanguinis F0405]
 gi|311097408|gb|EFQ55642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           parasanguinis F0405]
          Length = 450

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D L+Q +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLKYDKQLEFKTDLLQQALKKFSPEGFEQYDIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
              +   ++ Q +   + +   +    +I A+  ++   +    +          +R  +
Sbjct: 141 KGQVKAGLYAQNSHYLVELKDCLVQDPVIQAIANDLADLLTYYQIPIADERKELGVRTMM 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKIC 161
            +    + Q  Q IV       L++  +E   +  + +     +           +T+I 
Sbjct: 201 VRRARKSGQV-QIIVVTSRQINLNNLVQELVTKHPEIVTVAVNKNTSRSSEIYGEQTQII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
              + + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGEEAILEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSSEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A     V  ++I   ++E A+YN       N      +++E      +E    
Sbjct: 316 GTIGFAFANRVKSVRGMDIIPEAIEDAKYNAKRMGFENTHYEAGTAEEIIPRWYQE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GL    +  +   A   ++Y+SCN  +L RDL  L+  
Sbjct: 372 --------GYRANAVIVDPPRTGLGTKLIETLLQYAPEKMVYVSCNVSTLARDLVALTKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +   D FP+T   E  V LV+K
Sbjct: 424 YQVEYIQSVDMFPHTARTEAVVKLVKK 450


>gi|291460187|ref|ZP_06599577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417134|gb|EFE90853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 602

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 144/427 (33%), Gaps = 78/427 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---------LQIFRSEPIHYRMRAEFHIW 52
              L   +Y  QL  K  +L   +                  +    P+ YR +A++ I 
Sbjct: 95  GCQLQSLKYSAQLKFKTRKLFTDLCRIGGVEEAFLREISDPIVGMENPLRYRNKAQYPIA 154

Query: 53  HDG-DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLL 100
            D         +  ++   +  +  + G+             +    I        + L+
Sbjct: 155 RDRMGRPSAGFYAGRSHRLIPCEDCLIGAEENRDILSILLRWMERFDIPPYDEGSGKGLI 214

Query: 101 RAKLFQIDYLTSQSDQAIVTL-----IYHRLLDDAWREC--------------------- 134
           R  L +  Y + +    +V        +  LL +                          
Sbjct: 215 RHALIRKGYYSGEWMLCLVINGRSLPHWESLLSELKGAEAPDPEGSEGESFGAEFPSAGK 274

Query: 135 -------------AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
                         IRLR    +       +    +        ++++R+    + + +R
Sbjct: 275 EEGRENRGKRTRSKIRLRSFSFSIHTGRDNVIMGREIVNLYGPGFIEDRI----QGIRFR 330

Query: 182 QIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
               SF Q N      + E VL  +      ++ +LYCG G  SL+L+    RV  +EI 
Sbjct: 331 ISPLSFYQVNPVQTERIYETVLEFSALSGTENVFDLYCGIGTISLLLSAAAGRVYGIEII 390

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +V  AR N   N + N      +++E       E              R   + VDPP
Sbjct: 391 PDAVRDARENAERNGIENAYFFTGAAEELLPRWHAE----------HPGERIDLVCVDPP 440

Query: 301 RSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           R G D+  +  + +     ++Y+SC+P +L RD+  L    + + R+  FD FP T H+E
Sbjct: 441 RKGCDERCLETIISMSPERLIYVSCDPATLARDIKYLREHGYELRRIRPFDNFPETVHIE 500

Query: 358 CGVLLVR 364
              LL +
Sbjct: 501 TVCLLSK 507


>gi|15902976|ref|NP_358526.1| hypothetical protein spr0932 [Streptococcus pneumoniae R6]
 gi|116515807|ref|YP_816392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae D39]
 gi|149019625|ref|ZP_01834944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP23-BS72]
 gi|168483100|ref|ZP_02708052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1873-00]
 gi|50401573|sp|Q8DPY7|Y932_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr0932
 gi|15458541|gb|AAK99736.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076383|gb|ABJ54103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae D39]
 gi|147931000|gb|EDK81980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP23-BS72]
 gi|172043444|gb|EDT51490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1873-00]
          Length = 543

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 153/390 (39%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGLAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|255528224|ref|ZP_05395044.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
 gi|296188118|ref|ZP_06856510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           carboxidivorans P7]
 gi|255508074|gb|EET84494.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
 gi|296047244|gb|EFG86686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           carboxidivorans P7]
          Length = 450

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 152/391 (38%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHD--- 54
             T     YE+QL  K  ++  +     + N +        E   YR + EF    +   
Sbjct: 79  GCTTQFLPYEKQLELKHKQVLDLFHNAGIENYEFLGIETSPEEFEYRNKMEFTFGDEEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103
           G+    +    ++   + +D           +            +     ++ E  LR  
Sbjct: 139 GELTLGMHIKGKSFGIVNVDNCKIVDEDFRKILDFTVNYFRKNPLPYYRVMKREGYLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    +VT        + ++E  +       L+  LH        + +A++
Sbjct: 199 VIRKGKNTGEILVNLVTTSQIDFNLEEFKESLLNLSYAGELKGILHTINDSFSDVVQADE 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            K+   RDY+ E L      L ++    SF Q N+     +   V          ++ +L
Sbjct: 259 IKVLYGRDYIIEELM----GLKFKIAPESFFQTNSKGAEKLYSIVKEFLGDASSKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A +  +VL +E+ + +V+AA  N   N +NN + +     +  + +   
Sbjct: 315 YCGTGTIGQIVAPNAKKVLGIELIEEAVKAANENSKLNGLNNCEFIAGDVAKVIKTVTE- 373

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +  P I+Y+SCNP +L  DL  
Sbjct: 374 --------------KPDVIILDPPRPGVHPVALDYVIKFNAPDIVYVSCNPKTLVTDLKG 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    +T+E++ + D FP+T H+E  V L +
Sbjct: 420 LIEAGYTVEKVKIMDMFPHTPHVETVVKLSK 450


>gi|223932232|ref|ZP_03624236.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591]
 gi|223899213|gb|EEF65570.1| RNA methyltransferase, TrmA family [Streptococcus suis 89/1591]
          Length = 453

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 147/379 (38%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QLA K  ++   +              +    P+ YR +A   +      L    F 
Sbjct: 88  YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDNPLAYRNKAAVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + + I+ F      I+AL++   +++  + L+P        L+R  + +  + + Q
Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169
               +VT    R           RL          +Q I   N T     +++      E
Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFHLLHGSE 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +        +     SF Q N  +   + +  +   +    D+ ++ Y G G   L  A
Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  ++ N A N ++NV  V  S++   Q    +            
Sbjct: 324 KQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   IFVDPPR GL ++ +    +     I+YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC VLL R
Sbjct: 432 PTDLFPNTHHVECVVLLQR 450


>gi|157150892|ref|YP_001450645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157075686|gb|ABV10369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 456

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 151/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++       +P+ YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKSKQVKDSLYKIAGISDVEVAETLGMEDPVKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRCGHYSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     +        + +    +DY+ +
Sbjct: 208 IMVILVTTRPKIFRVEQLIEQVIKQFPEIVSVMQNINDRNTNAIFGKEWRTLYGQDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    SF Q N  +   + +  +        D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----FQIAGPSFYQVNTKMAEKLYQTAIDFADLRADDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+   +VE ++ N A N + N   V  +++   +   +E            
Sbjct: 324 KLVKEVYGVEVIPEAVENSKKNAAINGITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   IFVDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTVIFVDPPRKGLTESFIKASTQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LLVR
Sbjct: 432 PVDLFPQTHHVEVVSLLVR 450


>gi|229826831|ref|ZP_04452900.1| hypothetical protein GCWU000182_02210 [Abiotrophia defectiva ATCC
           49176]
 gi|229788986|gb|EEP25100.1| hypothetical protein GCWU000182_02210 [Abiotrophia defectiva ATCC
           49176]
          Length = 467

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 149/407 (36%), Gaps = 64/407 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR------SEPIHYRMRAEFHIWHD 54
                   YE +L  K +++   +       + +I         E +HYR +A+F +  D
Sbjct: 80  GCQFQHLSYEVELKFKQEKVFNCIKRIGGFKDEEIPMLPIIGCEEIMHYRNKAQFPVGVD 139

Query: 55  G-DDLYHIMFDQQTKERMRIDYF---MPGSLLI-----------------NALMIEMMAT 93
              +     + +++ E +        +  + LI                   +  +    
Sbjct: 140 KNGETVTGFYAERSHEIVDTTKCCIHVEENELILETLKAFMKKYKISAYEEKINPKTRKP 199

Query: 94  IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA---------IRLRDALHA 144
            + + L+R  + +  + T +    +V           + +           +R+      
Sbjct: 200 EKAKGLVRHIMTRKGFATGEIGICVVINGNTLPNAAEFTDMMLKAFEGRNDVRITSICVN 259

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
              +I  +   ++ K      Y+ + +      + ++    SF Q N      +    L 
Sbjct: 260 INKKITNVIFGDELKCIYGEPYIVDMI----EDIKFKISPFSFYQVNPAQTRKLYGKALE 315

Query: 205 ATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              G+ G+  + +LYCG G  SL LA+    V  VEI   +VE A+ N   N + N    
Sbjct: 316 -FAGLTGEEVVWDLYCGIGTISLFLAKKAKEVYGVEIVPAAVENAKENAKLNGIENAYFT 374

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILY 320
              +++         E  +L        +   I VDPPR G D+  +  +  Y    ++Y
Sbjct: 375 VGKAED---------EAKKLP-------KPDVIVVDPPRKGCDEKLLETIMNYKPERVVY 418

Query: 321 ISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +SC+P +L RDL +L     + +E +   DQF    H+E   L+ RK
Sbjct: 419 VSCDPATLARDLKVLCGDGGYKLEEVQAVDQFSRGVHVESVCLMTRK 465


>gi|39996552|ref|NP_952503.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|51316711|sp|Q74D67|Y1452_GEOSL RecName: Full=Uncharacterized RNA methyltransferase GSU1452
 gi|39983433|gb|AAR34826.1| RNA methyltransferase, TrmA family [Geobacter sulfurreducens PCA]
 gi|307634847|gb|ADI84291.2| RNA methyltransferase, TrmA family [Geobacter sulfurreducens KN400]
          Length = 495

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 151/387 (39%), Gaps = 38/387 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEP----IHYRMRAEFHIWHDGD 56
              L++  Y  QL  K     + +  +Q     ++  + P    +HYR  A+  +     
Sbjct: 96  GCPLIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSAKLVVSGTFR 155

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLF 105
                ++ + + + M I        LIN              +++        LLR  + 
Sbjct: 156 RPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTGSGLLRYLVV 215

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +I   T  +    VT+  +    +     A  L+ ++   +  +Q +  +    I   RD
Sbjct: 216 RISERTGTAMAVFVTVERNY---NEIHHLAKHLQQSVPQVEVVVQNVNSSEGNVILGQRD 272

Query: 166 YVDER---LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
           Y   R   LT     + +     SF Q N+G    + E V   +     + +++LYCG G
Sbjct: 273 YFLTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYETVRQWSSLTGKESVVDLYCGIG 332

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L LA     V  +E+ + +V  A  N   N ++N       + E  + +  E E   
Sbjct: 333 GIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEELVEEGE--- 389

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338
                    R   + ++PPR G D   +  V A     I+Y+SC P +L RDL IL+   
Sbjct: 390 ---------RLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLARDLDILAGLG 440

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           +   R+   D FP T H+E   LLV+K
Sbjct: 441 YATLRVQPVDMFPQTPHVENIALLVKK 467


>gi|227432946|ref|ZP_03914888.1| tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351292|gb|EEJ41576.1| tRNA (uracil-5-)-methyltransferase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 498

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/389 (22%), Positives = 147/389 (37%), Gaps = 47/389 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QL  K D L Q +  FQ            I    P  YR +A+F +   GD 
Sbjct: 127 LEHMNYPAQLRFKKDVLVQSLEKFQPKGWSNYDIRDTIGMDHPYEYRNKAQFPVRKIGDK 186

Query: 58  LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106
           L   M+ + + + + +      +            L++ L + +    +    ++  + +
Sbjct: 187 LSVGMYKRGSHDLVDLPVVHTQTPDTMKVMRTVRELLDKLSVSIYNEDKNRGTVKTIVAR 246

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI------ 160
           +   TS+     +T       D A  E    +  AL       Q       + +      
Sbjct: 247 VSQTTSEVQLTFITNTDGFPGDTALIE---AINQALPEVTGIFQNYNPGRTSLVWGEETL 303

Query: 161 -CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
               +DY++E++        ++    +F Q N      +    LAA      D L++ Y 
Sbjct: 304 KLWGKDYIEEKVLGK----TFQLSPRAFMQLNHTQMSVVYNQALAALDLTHADKLVDAYA 359

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +EI   +V+ A  N   NH++N      ++++     + E  
Sbjct: 360 GVGTIGLSLADKAGEVRGMEIIPEAVDDANQNATLNHISNAHYEVGTAEKLFPKWQSE-- 417

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS 336
                      +    + VDPPR+GLD A    +++  P   +YISCN  +L RDL  LS
Sbjct: 418 ----------GWIADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLS 467

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ +   D FP T   E  V L ++
Sbjct: 468 KAYKVDYIQSIDMFPQTARWEGVVKLTKR 496


>gi|325684651|gb|EGD26806.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 451

 Score =  263 bits (672), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 152/385 (39%), Gaps = 42/385 (10%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDLY 59
           +L   +Y++QL  K  ++++++    +  +++  + P      YR +A+  +      L 
Sbjct: 81  SLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPLETGYRNKAQVPVRMVKGQLE 140

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQID 108
              F + + + + ++ F      I+ +++ +   +R + +           +R    +  
Sbjct: 141 IGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRRG 200

Query: 109 YLTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             T      +V L       H ++D+      +  +        +   +           
Sbjct: 201 TATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLWG 258

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           + Y+D+++      L +     SF Q N+     + +  +      + DL+ + Y G G 
Sbjct: 259 KRYIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGT 314

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E      
Sbjct: 315 IGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE------ 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
                   +   IFVDPPR GL    +          ++YISCNP +L RD+ +L    +
Sbjct: 369 ------GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
           T + ++  D FP T H+E   +L R
Sbjct: 423 TTDLVSPVDMFPQTPHVESVTVLER 447


>gi|313123184|ref|YP_004033443.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279747|gb|ADQ60466.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 451

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 152/385 (39%), Gaps = 42/385 (10%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDLY 59
           +L   +Y++QL  K  ++++++    +  +++  + P      YR +A+  +      L 
Sbjct: 81  SLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPLETGYRNKAQVPVRMVKGQLE 140

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQID 108
              F + + + + ++ F      I+ +++ +   +R + +           +R    +  
Sbjct: 141 IGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRRG 200

Query: 109 YLTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             T      +V L       H ++D+      +  +        +   +           
Sbjct: 201 TATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLWG 258

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           + Y+D+++      L +     SF Q N+     + +  +      + DL+ + Y G G 
Sbjct: 259 KRYIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIGT 314

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E      
Sbjct: 315 IGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAGKAEELMPKWAAE------ 368

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
                   +   IFVDPPR GL    +          ++YISCNP +L RD+ +L    +
Sbjct: 369 ------GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMKAGY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
           T + ++  D FP T H+E   +L R
Sbjct: 423 TTDLVSPVDMFPQTPHVESVTVLER 447


>gi|332075642|gb|EGI86110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA17545]
          Length = 543

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 153/385 (39%), Gaps = 40/385 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGISDVEVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ L++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFFIQDPVIDELVVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q        + +    +D++ +
Sbjct: 208 IMVILVTTRPKVFRVEQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQDFITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        Y+    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----YQIAGPAFYQVNTEMAEKLYQTTIDFAELKEDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N   NH++N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSKKNAQLNHISNTHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370
             D FP T H+E   LL +     H
Sbjct: 432 PVDLFPQTHHVETVALLSKLDVDKH 456


>gi|315650587|ref|ZP_07903651.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
 gi|315487151|gb|EFU77469.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
          Length = 465

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 154/393 (39%), Gaps = 47/393 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
             TL    Y  +L  K +++   +      +L        I   EP  YR +++F     
Sbjct: 85  GCTLQSLDYRAELRLKQNKVENHLKRIGGFDLSNVEIEEIIGMEEPYRYRNKSQFPFGRK 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAK 103
                   F  +T   +  D  + G              +    ++         ++R  
Sbjct: 145 NGKNITGYFAGRTHSIVEFDDCIIGIEENKTVLKTVLEFMEKYRVDAYNEEDTSGIVRHV 204

Query: 104 LFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRA 155
           L +  ++T +    +V     L+Y R L ++       L   L +    I      +   
Sbjct: 205 LIRKGFVTGELMVCVVINADNLVYSRELVES---LCTALGKDLQSVSLNINKKNTNVILG 261

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLL 214
           ++T     R+Y+++ +      + +R    SF Q N      +    L  A    +  + 
Sbjct: 262 DRTITIYGREYIEDYIG----DVKFRISPQSFYQVNPVQTKKLYGKALEYAALTGEETVW 317

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           ++YCG G  SL LA+    V  VEI   +++ AR N   N++ NVK     ++E      
Sbjct: 318 DMYCGIGTISLFLAKSAKFVYGVEIVDAAIQNARENAKINNIENVKFFVGKAEEIIT--- 374

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
            E E   ++DID        I VDPPR GLD   +  +       I+Y+SC+  +L RDL
Sbjct: 375 GEYENGNIRDID-------VIVVDPPRKGLDKIAIDTMLKLSPKRIVYVSCDSSTLARDL 427

Query: 333 SILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
            +L    + +++L + DQF  + H E  V++ +
Sbjct: 428 KLLCEKEYELKKLTVVDQFARSYHTESVVVMSK 460


>gi|291532749|emb|CBL05862.1| 23S rRNA m(5)U-1939 methyltransferase [Megamonas hypermegale
           ART12/1]
          Length = 373

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 134/359 (37%), Gaps = 40/359 (11%)

Query: 30  VPNLQIFRSEP----IHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRIDYFMPGSLLIN 84
             ++ I  + P     HYR + +F I     + +    +   +   +  +         N
Sbjct: 7   KKDIIIHPTMPSVHEWHYRNKMQFPIGRSKKEGIIVGCYAHSSHNIINTENCHIQKHTNN 66

Query: 85  ALMIEMMA-------TIRLEPLLRAKLFQIDYLTSQSD-QAIVTLIYHRLLDDAWRECAI 136
            +   +         ++  E      L  +   T++ + + +V L+  +      RE   
Sbjct: 67  VIANAVREMATKFKLSVYDEKTHYGLLRHVVGRTNRDETECMVVLVTAQPKIPRVREIVN 126

Query: 137 RLRDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            LR  +      +Q I           + KI     ++ +RL     +L ++    SF Q
Sbjct: 127 FLRSKIPNLTSVVQNINTGRNNIIMGKECKILWGASHITDRLG----SLKFKISALSFFQ 182

Query: 190 PNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            N      + E  L  A    +  +++ YCG G  SL LA+   +V  +EI   ++  A 
Sbjct: 183 VNTEQAEKLYECALKYANLTGKETVIDGYCGTGTISLFLAQKAKKVYGMEIVPEAIRDAI 242

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   N++ N + +   + +    + R               R   I  DPPR+G     
Sbjct: 243 ANARDNNIRNAEFLTGDAAKLMPQLYR------------KGLRPDVIVTDPPRAGCAPEV 290

Query: 309 VGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +    A     I+Y+SCNP SL RD+ IL    +    +   D FP T H+E   LLV+
Sbjct: 291 LKTFAAMRPKRIVYVSCNPASLARDIGILDELGYKATEIQPVDMFPQTGHVESVCLLVK 349


>gi|116617299|ref|YP_817670.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096146|gb|ABJ61297.1| 23S rRNA m(5)U-1939 methyltransferase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 496

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/389 (22%), Positives = 147/389 (37%), Gaps = 47/389 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QL  K D L Q +  FQ            I    P  YR +A+F +   GD 
Sbjct: 125 LEHMNYPAQLRFKKDVLVQSLEKFQPKGWSNYDIRDTIGMDHPYEYRNKAQFPVRKIGDK 184

Query: 58  LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106
           L   M+ + + + + +      +            L++ L + +    +    ++  + +
Sbjct: 185 LSVGMYKRGSHDLVDLPVVHTQTPATMKVMRTVRELLDKLSVSIYNEDKNRGTVKTIVAR 244

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI------ 160
           +   TS+     +T       D A  E    +  AL       Q       + +      
Sbjct: 245 VSQTTSEVQLTFITNTDGFPGDTALIE---AINQALPEVTGIFQNYNPGRTSLVWGEETL 301

Query: 161 -CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
               +DY++E++        ++    +F Q N      +    LAA      D L++ Y 
Sbjct: 302 KLWGKDYIEEKVLGK----TFQLSPRAFMQLNHTQMSVVYNQALAALDLTHADKLVDAYA 357

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +EI   +V+ A  N   NH++N      ++++     + E  
Sbjct: 358 GVGTIGLSLADKAGEVRGMEIIPEAVDDANQNATLNHISNAHYEVGTAEKLFPKWQSE-- 415

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS 336
                      +    + VDPPR+GLD A    +++  P   +YISCN  +L RDL  LS
Sbjct: 416 ----------GWIADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLS 465

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ +   D FP T   E  V L ++
Sbjct: 466 KAYQVDYIQSIDMFPQTARWEGVVKLTKR 494


>gi|104773610|ref|YP_618590.1| methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103422691|emb|CAI97304.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 451

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 151/386 (39%), Gaps = 42/386 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSE-PIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K  ++++++    +  +   +I  S     YR +A+  +      L
Sbjct: 80  ASLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAEILPSPLETGYRNKAQVPVRMVKGQL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQI 107
               F + + + + ++ F      I+ +++ +   +R + +           +R    + 
Sbjct: 140 EIGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRR 199

Query: 108 DYLTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              T      +V L       H ++D+      +  +        +   +          
Sbjct: 200 GTATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLW 257

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
            + Y+D+++      L +     SF Q N+     + +  +      + DL+ + Y G G
Sbjct: 258 GKRYIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIG 313

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E     
Sbjct: 314 TIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE----- 368

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
                    +   IFVDPPR GL    +          ++YISCNP +L RD+ +L    
Sbjct: 369 -------GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAG 421

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +T + ++  D FP T H+E   +L R
Sbjct: 422 YTTDLVSPVDMFPQTPHVESVTVLER 447


>gi|261418686|ref|YP_003252368.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|319765501|ref|YP_004131002.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
 gi|261375143|gb|ACX77886.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
 gi|317110367|gb|ADU92859.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
          Length = 462

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 160/383 (41%), Gaps = 45/383 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
            YE QL  K + ++ ++        V    I    P HYR + EF    +G    H   +
Sbjct: 96  HYEGQLRHKTEHVKTLLKEHGFDPGVVRDTIGMEHPWHYRNKMEFTFSPEGLLGLHEQGN 155

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
            +  + + ++  +     I    +E+    R            E LLR  + +  + T +
Sbjct: 156 FR--QVISLETCLIAGEKIVKAAMEVARWARDHQLPGYHKDTHEGLLRHVMVRESFATGE 213

Query: 114 SDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRD 165
              A+  T      L +A  +   R+  AL   K  + L         +A +T +   RD
Sbjct: 214 VMVALFATEAPEGELKEAAADLTERITKALPEVKSLLWLENRAWADRTQAEQTHVLAGRD 273

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           ++ + L        YR   ++F Q N      ++E  L   +    + +++L+CG G FS
Sbjct: 274 FIYDALC----GFRYRLWFDTFFQTNPVQAAKLVELALEMGEPQPHEKMIDLFCGVGTFS 329

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A+    +  +EI + S+E+A+ N   N ++N   +   ++              + +
Sbjct: 330 LPFAKRVKELAGIEIVETSIESAKRNAKDNGIDNTYFLARDAR------------RGIDE 377

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341
           +     R + + +DPPRSG     +  +       ++Y+SCNP++   D++ L    +T+
Sbjct: 378 VLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFASDITELVPFGYTL 437

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           E +   D FP+T H+EC  LLVR
Sbjct: 438 ETVQPVDMFPHTAHVECCALLVR 460


>gi|187778559|ref|ZP_02995032.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC
           15579]
 gi|187772184|gb|EDU35986.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC
           15579]
          Length = 451

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 155/392 (39%), Gaps = 47/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW---HD 54
             +     YE+QL  K ++L ++     + + +        E   YR + EF        
Sbjct: 79  GCSTQYIPYEKQLEIKEEQLLKLFENKDIEDFEFLGVEKSPEEYEYRNKMEFTFGDMEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL---- 110
           GD    +    ++   + +D          +++  ++     + L + ++   +      
Sbjct: 139 GDLTLGMHVKNRSFSIVTVDNCEIVDKDFRSILTSVVNYFSKKGLPKYRVMSHEGFLRNL 198

Query: 111 ----TSQSDQAIVTLIYHRLLDDAWRECAIRL---------RDALHARKYQIQLIGRANK 157
                  + + +V ++    ++  ++E    L         +  LH     +  + + +K
Sbjct: 199 VIRKAKNTGEILVNIVTTSQMEFDFKEIVDILLKGEYKGEIKGILHTINDTLSDVVQVDK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            +I   RDY+ E L      L ++    +F Q N+     +   V          ++ +L
Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A    +V+ VE+ + +V+AA  N   N ++N + +     +  + +++ 
Sbjct: 315 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLDNCEFIAGDVAKVIKDLKQ- 373

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLEY 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L    + +E++   D FP+T H+E  V + +K
Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHVETVVRIAKK 451


>gi|147677853|ref|YP_001212068.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum
           SI]
 gi|146273950|dbj|BAF59699.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum
           SI]
          Length = 470

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 148/399 (37%), Gaps = 52/399 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y +QL  K   ++  +                   P HYR +  F +    D
Sbjct: 87  GCRLQHINYGEQLMLKTILVKDSLARIAGLEKVKVRAAAGMEHPWHYRNKVHFQVEERPD 146

Query: 57  DLYHIMFDQQTKERMRI---DYFM-PGSLLINALMIEMMATI------------------ 94
            +    +++ T               G LL++  + ++ A I                  
Sbjct: 147 KIALGFYEEGTHNLTAFFNEGACPGTGCLLVDDELNKLAALIEKLLNRHRGPFGRRILPQ 206

Query: 95  -RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-- 151
            R     R  + +  + T +    +VT       + A+ +  + LR  L +    I    
Sbjct: 207 KRQSRFFRHIVLRKGFFTGEVMAVLVTGSGEWPGEKAFVKELLSLRPGLVSLVRNINDGP 266

Query: 152 --IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKG 208
             +    K++    R+++ +RL      LI+R   +SF Q N    + +   V   A   
Sbjct: 267 PGVLFGKKSRCLAGREHIKDRLGH----LIFRISPSSFYQVNPVQTLVLYNKVQQYAALT 322

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  +++ Y G G+ +L LA    RV  +E    +V  AR N A N + N + +    + 
Sbjct: 323 GRETVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITNAEFLTGKVES 382

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
               +                 R + + +DPPR G     +  V     P ++Y+SCNP 
Sbjct: 383 LIPILAA------------QGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYVSCNPA 430

Query: 327 SLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L RDL   +   + ++ +   D FP+T H+EC VL+ R
Sbjct: 431 TLARDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSR 469


>gi|297528764|ref|YP_003670039.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
 gi|297252016|gb|ADI25462.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
          Length = 462

 Score =  263 bits (671), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 161/383 (42%), Gaps = 45/383 (11%)

Query: 9   QYEQQLAEKVDRLRQMML--AFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
            YE QL  K ++++ ++    F        I    P HYR + EF    +G    H   +
Sbjct: 96  HYEGQLRHKTEQVKALLAQRGFDPDVVRETIGMERPWHYRNKMEFTFSPEGLLGLHEQGN 155

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
            +  + + ++  +     I    +E+    R            E LLR  + +  + T +
Sbjct: 156 FR--QVISLETCLIAGEKIVKAAMEVARWARDHQLPGYHKDTHEGLLRHVMVRESFATGE 213

Query: 114 SDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRD 165
              A+  T      L +A  +   R+  AL   K  + L         +A +T +   RD
Sbjct: 214 VMVALFATEAPEGELKEAAADLTERITKALPEVKSLLWLENRAWADRTQAEQTHVLAGRD 273

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           ++ + L        YR   ++F Q N      ++E  L   +    + +++L+CG G FS
Sbjct: 274 FIYDELC----GFRYRLWFDTFFQTNPVQAAKLVELALEMGEPQPHENMIDLFCGVGTFS 329

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A+    +  +EI + S+E+A+ N   N ++N   +   ++              + +
Sbjct: 330 LPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFLARDAR------------RGIDE 377

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341
           +     R + + +DPPRSG     +  +       ++Y+SCNP++   D++ L    +T+
Sbjct: 378 VLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFASDITELVPFGYTL 437

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           E +   D FP+T H+EC  LLVR
Sbjct: 438 ETVQPVDMFPHTAHVECCALLVR 460


>gi|330718458|ref|ZP_08313058.1| RNA methyltransferase [Leuconostoc fallax KCTC 3537]
          Length = 496

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 145/388 (37%), Gaps = 41/388 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QLA K D + Q +  FQ  + Q       I    P  YR +A+F +     +
Sbjct: 105 LEHMTYAAQLAFKKDVIAQALEKFQPRDWQSINLRDTIGMQHPYEYRNKAQFPVRKIQGE 164

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDYL 110
           L   M+ + + E + +        L   +M ++         +I  E   +  +  +   
Sbjct: 165 LKMGMYARGSHELIDLPVVHTQDPLTMTVMRKVRDLLEKQSISIYNEEKNKGTVKTVVAR 224

Query: 111 TSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICL 162
            SQ S Q  +T + +        E    ++  L       Q            ++T    
Sbjct: 225 ASQTSGQVQLTFVTNTDGFPGDSELIQAIQKELPQVVGIFQNYNPGRTSLVWGDETIKLW 284

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            +DY++E +        ++    +F Q N        E  +AA      D L++ Y G G
Sbjct: 285 GQDYIEETILGK----TFQLSPRAFMQLNHTQMTVAYETAIAALDLKHADRLVDAYAGVG 340

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              + LA     V  +E+   +V+ A  N   N ++N      ++++     ++E     
Sbjct: 341 TIGITLADKTGEVRGMEVIPEAVDDAMINAQINGIDNATYEVGTAEQLLPQWQKE----- 395

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTH 339
                   +    + VDPPR GL+ A    +        +Y+SCNP +L RDL  LS  +
Sbjct: 396 -------GWIADALVVDPPRPGLEPALKKEILRTKPEKFVYMSCNPSTLARDLVELSKVY 448

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367
            ++ +   D FP T   E    L RK +
Sbjct: 449 RVDYIQSIDMFPQTPRWEGIAKLTRKNN 476


>gi|168494457|ref|ZP_02718600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575617|gb|EDT96145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC3059-06]
 gi|332075376|gb|EGI85845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA41301]
          Length = 543

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 68/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +    R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLFRRFDLKPYDEKEHSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|56418892|ref|YP_146210.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56378734|dbj|BAD74642.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 462

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 86/383 (22%), Positives = 161/383 (42%), Gaps = 45/383 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +YE QL  K + ++ ++        V    I    P HYR + EF    +G    H   +
Sbjct: 96  RYEGQLRHKTEHVKTLLKEHGFDPGVVRDTIGMEHPWHYRNKMEFTFSPEGLLGLHERGN 155

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
            +  + + ++  +     I    +E+    R            E LLR  + +  + T +
Sbjct: 156 FR--QVISLETCLIAGEKIVKAAMEVARWARDHRLPGYHKDTHEGLLRHLMVRESFATGE 213

Query: 114 SDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRD 165
              A+  T      L +A  +   R+   L   K  + L         +A +T +   RD
Sbjct: 214 VMVALFATEAPEGDLKEAAADLTERITKMLPQVKSLLWLENRAWADRTQAEQTHVLAGRD 273

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           ++ + L        YR   ++F Q N      ++E  L   K    + +++L+CG G FS
Sbjct: 274 FIYDELC----GFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHENMIDLFCGVGTFS 329

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A+    +  +EI + S+E+A+ N   N ++N   +   ++              + +
Sbjct: 330 LPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFLARDAR------------RGIDE 377

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341
           +     R + + +DPPRSG     +  +       ++Y+SCNP++   D++ L +  +T+
Sbjct: 378 VLEQFGRPELLLLDPPRSGAGGKVMRKIGRARPERVVYVSCNPETFASDITELVSFGYTL 437

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   D FP+T H+EC  LLVR
Sbjct: 438 KTVQPVDMFPHTAHVECCALLVR 460


>gi|295426510|ref|ZP_06819160.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
           DSM 11664]
 gi|295063878|gb|EFG54836.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
           DSM 11664]
          Length = 450

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 151/382 (39%), Gaps = 34/382 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K +++  ++    +  +++       E   YR +A+  +      L
Sbjct: 80  ASLAHIKYDKQLEFKRNQVVNLLKKAHLDGVKVNETLPSPEQTGYRNKAQVPVREVNGQL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLT 111
               F + + + + +  F      I+ +++     +R   +        + ++  +D   
Sbjct: 140 EIGFFRRHSHDLVPLTNFFTTDPEIDRVLVATRDILRKYEVPAYDEIHHKGEVRYLDVRR 199

Query: 112 SQS-DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYV-- 167
           S++  + +V L+          + A  +          + L     KT + L R DYV  
Sbjct: 200 SKANGKLMVILVCLHKDFPQLPKVAAEISQI--PEISSVILNYNPKKTNVILGRNDYVVL 257

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
            ++ L      + +R    SF Q N+     + +  +        D++ + Y G G   L
Sbjct: 258 GEDHLIDKIGDVEFRISPKSFFQINSLQTPRLYDLAIKKADLKANDVVVDAYSGIGTIGL 317

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+H   V  +E  + +VE A  N   N + N + V   +++       E         
Sbjct: 318 SVAKHVKAVRGMETIREAVEDANANAKLNGIENAQYVTGKAEDVMPRWASE--------- 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIE 342
                +   IFVDPPR GL    +    A     I+YISCNP +  RDL +L    +  +
Sbjct: 369 ---GLKTDVIFVDPPRKGLTPEFINAAAATKPKRIVYISCNPATQIRDLQLLQEKGYHFD 425

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            ++  D FP T H+E   +L R
Sbjct: 426 EISPVDMFPQTPHVESVTVLER 447


>gi|116513601|ref|YP_812507.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116092916|gb|ABJ58069.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|325125246|gb|ADY84576.1| RNA methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 451

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 152/386 (39%), Gaps = 42/386 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDL 58
            +L   +Y++QL  K  ++++++    +  +++  + P      YR +A+  +      L
Sbjct: 80  ASLAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPLETGYRNKAQVPVRMVKGQL 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQI 107
               F + + + + ++ F      I+ +++ +   +R + +           +R    + 
Sbjct: 140 EIGFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRR 199

Query: 108 DYLTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              T      +V L       H ++D+      +  +        +   +          
Sbjct: 200 GTATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLW 257

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
            + Y+D+++      L +     SF Q N+     + +  +      + DL+ + Y G G
Sbjct: 258 GKRYIDDKIG----DLTFEISPQSFFQINSLQTPRLYKLAIDQAGLTKDDLIVDAYSGIG 313

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E     
Sbjct: 314 TIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE----- 368

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
                    +   IFVDPPR GL    +          ++YISCNP +L RD+ +L    
Sbjct: 369 -------GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAG 421

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +T + ++  D FP T H+E   +L R
Sbjct: 422 YTTDLVSPVDMFPQTPHVESVTVLER 447


>gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
           ATCC 700633]
 gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
           ATCC 700633]
          Length = 455

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 152/389 (39%), Gaps = 44/389 (11%)

Query: 3   GTLL--IDQYEQQLAEKVDRLRQMMLAF-QVPNLQ----IFRSEPIHYRMRAEFHIWHDG 55
           GT+     +YE QLA K  +++ +M    ++P L+    I    P  YR +A+  +    
Sbjct: 82  GTMPLQHMKYEAQLAFKQKQVKHVMNTIAKMPELEVRPTIGMEHPFGYRNKAQIPVRMVN 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104
             L    F + + + + ++ F      I+ +++ +   +R   +           LR  +
Sbjct: 142 GLLTTGFFKKNSHDLVSMEDFHIQDPEIDRIILVVRDILRKYAIEAYDEEKHTGDLRHII 201

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +    TSQ    +VT     +    + D   +    +   +   +     +   ++ K+
Sbjct: 202 VRRGLRTSQVMIILVTRTEKFVQKEAVVDQITQQLPEVVSIVQNIQPHQSNVIMGSQKKV 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
               D   E L        +     SF Q N      +    + A  G+ GD  +++ YC
Sbjct: 262 LFGEDAFQEVLM----EFTFTISSRSFFQVNTIQTEVLYHEAIQA-AGLTGDETVVDAYC 316

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL  A+   +V A+EI   +++ A+ N   N ++NV     ++++          
Sbjct: 317 GIGTMSLAFAKRAKKVYAMEIVPDAIQMAKENARINQIDNVTFEVGAAEKVMPTWVD--- 373

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335
                       +   I VDPPR GLD A +          ++Y+SCNP +L RDL++  
Sbjct: 374 ---------SGLQPDVIVVDPPRKGLDGAFIDAAVKTKARKLVYVSCNPATLARDLALFQ 424

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
              +        D FP T  +E   +L R
Sbjct: 425 EKGYQALYAQPVDMFPMTTAIETVAVLER 453


>gi|241895373|ref|ZP_04782669.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|241871347|gb|EER75098.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 483

 Score =  262 bits (670), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 145/384 (37%), Gaps = 47/384 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y+ QL  K D +RQ +  ++            I   +P  YR +A+F +     +L   M
Sbjct: 119 YDGQLTFKQDVIRQALEKYKPAGYAHYKLLPTIGMDDPKEYRNKAQFPVREVDGELAVGM 178

Query: 63  FDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           + + + + + +                   ++  + + +    + + +++  + ++   T
Sbjct: 179 YKRHSHKLVDLPVVTTQHPATLKVVRGVRDILADMQLPIYNERKNKGIVKTLIARVSEST 238

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
                 IVT    R L DA  E   R+  AL       Q I          + T+     
Sbjct: 239 GDVQLTIVTN--GRSLPDA-DELINRIHQALPEVVSIHQNINRGQSSLIWGDDTRQIWGE 295

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY+ E +        ++    +F Q N      + +  + A    + D L++ Y G G  
Sbjct: 296 DYITEEINGK----TFKLSPRAFLQLNPRQTQRLYQEAIKALDLTKADKLIDAYSGVGTI 351

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA H   V  ++    S++ A  N   NHV N      +++E      +E       
Sbjct: 352 GISLADHAGEVRGMDTVAESIDDANENAIDNHVTNATYYVGAAEELIPQWTQE------- 404

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341
                 +    + VDPPR+GLD A    +        +Y+SCN  +L RDL  L+  + +
Sbjct: 405 -----GWIADAVVVDPPRTGLDIALRQTILETKPEKFVYVSCNASTLARDLVDLAKVYRV 459

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           + +   D FP T   E  V   +K
Sbjct: 460 DYIQSIDMFPQTARWEGIVKFTKK 483


>gi|116618671|ref|YP_819042.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097518|gb|ABJ62669.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 464

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 135/379 (35%), Gaps = 39/379 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +YE QLA K  ++ ++     V       I    P  YR +A+  +      L    + +
Sbjct: 99  KYEAQLAFKQHQIEELFKKVNVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLETGFYRR 158

Query: 66  QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            +   + I+ F      ++            L +        + ++R  + +  Y + + 
Sbjct: 159 GSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSAYEEETKKGVIRHIMARRGYYSHEL 218

Query: 115 DQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
              I+T        D   E        L+  +H        +      +     D + ++
Sbjct: 219 MVVIITNTKKLPNSDLIAEKLSAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHDQ 278

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR 229
           L        +    NSF Q N      +             D++ + Y G G  +L +A 
Sbjct: 279 LMGKD----FVIGPNSFYQVNPQTTSTLYALAAEKANLKPTDVVVDAYSGIGTITLSVAD 334

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              ++  V++ + ++E A  N   N + N + V   + E       E             
Sbjct: 335 KVKKIYGVDVVEGAIEDAEKNAKNNQITNAEFVLADAPEQMAKWADE------------G 382

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIE-RLA 345
            +   +FVDPPR GL    +  V+A      +YISCNP +L RD   IL+    IE  + 
Sbjct: 383 LKPNVVFVDPPRKGLTQELIDAVKAMNPEKFVYISCNPATLARDAVQILAAGFEIEGAVQ 442

Query: 346 LFDQFPYTRHMECGVLLVR 364
             DQFP T H+E   +  +
Sbjct: 443 PLDQFPQTTHVESITVFKK 461


>gi|260161759|emb|CAZ39303.1| hypothetical protein [Streptococcus suis]
 gi|313575341|emb|CBR26870.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus phage
           phi-SsUD.1]
          Length = 451

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 147/379 (38%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QLA K  ++   +              +    P+ YR +A   +      L    F 
Sbjct: 88  YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDSPLAYRNKAAVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + + I+ F      I+AL++   +++  + L+P        L+R  + +  + + Q
Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169
               +VT    R           RL          +Q I   N T     +++      E
Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFRLLHGSE 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +        +     SF Q N  +   + +  +   +    D+ ++ Y G G   L  A
Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  ++ N A N ++NV  V  S++   Q    +            
Sbjct: 324 KQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   IFVDPPR GL ++ +    +     I+YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LLV+
Sbjct: 432 PADLFPNTHHVECVALLVK 450


>gi|149012968|ref|ZP_01833857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP19-BS75]
 gi|169832868|ref|YP_001694472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Hungary19A-6]
 gi|303255584|ref|ZP_07341635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS455]
 gi|303260473|ref|ZP_07346441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP-BS293]
 gi|303262830|ref|ZP_07348767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265300|ref|ZP_07351210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS397]
 gi|303266507|ref|ZP_07352394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS457]
 gi|303268374|ref|ZP_07354170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS458]
 gi|147763121|gb|EDK70062.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP19-BS75]
 gi|168995370|gb|ACA35982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Hungary19A-6]
 gi|301801862|emb|CBW34580.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
 gi|302597440|gb|EFL64535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS455]
 gi|302636028|gb|EFL66526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638385|gb|EFL68852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP-BS293]
 gi|302642095|gb|EFL72446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS458]
 gi|302643958|gb|EFL74218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS457]
 gi|302645165|gb|EFL75402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae BS397]
          Length = 543

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 67/390 (17%), Positives = 152/390 (38%), Gaps = 40/390 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +V     +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVATRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           ++++   D FP T H+E   LL +     H
Sbjct: 427 LKKVQPVDLFPQTHHVETVALLSKLDVDKH 456


>gi|289167962|ref|YP_003446231.1| hypothetical protein smi_1119 [Streptococcus mitis B6]
 gi|288907529|emb|CBJ22366.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 452

 Score =  262 bits (669), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 151/380 (39%), Gaps = 40/380 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGITDVEVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +                   L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFFIQDPVIDEVVVALRDLFRRYDLKPYDEKEQAGLIRNLVVRRGHYSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q        + +    +D++ +
Sbjct: 208 IMVILVTTRPKVFRVEQLIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQDFITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        Y+    +F Q N  +   + +  +   +    D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----YQIAGPAFYQVNTEMAEKLYQTAIDFAELKADDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE +  N   N+++N   V  +++   +   ++            
Sbjct: 324 KHVKEVYGVEVIPEAVENSNKNAQLNNISNAHYVCDTAENAMKNWLKD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+EC  LLV++
Sbjct: 432 PVDLFPQTHHVECVSLLVKR 451


>gi|291276449|ref|YP_003516221.1| tRNA (uracil-5)-methyltransferase [Helicobacter mustelae 12198]
 gi|290963643|emb|CBG39475.1| tRNA (uracil-5)-methyltransferase [Helicobacter mustelae 12198]
          Length = 401

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 130/401 (32%), Positives = 196/401 (48%), Gaps = 49/401 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD----- 56
            G  L   Y  QL +K +    ++        +IF S    +R R E  I          
Sbjct: 10  GGCQLDKDYSTQLRQKYEDFTNLL---GFAPSEIFASPSRGFRARCELGIHKKPKSHAAF 66

Query: 57  -------------------------------DLYHIMFDQQTKERMRIDYFMPGSLLINA 85
                                          +++  M     K+ + I         +  
Sbjct: 67  IDPHDVASCLNLSAQPTHFDSMHVALKNPTQEIFLSMNSLGKKDHIPIQNCPNLIPKLQK 126

Query: 86  LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
           ++ ++   ++ E +L  KL+ I+ L     Q I+++IYHR L+D+W   A  L     A 
Sbjct: 127 ILHQLPPLLQPE-ILSYKLYAINLL--GVGQGILSMIYHRKLEDSWEHAARNL-----AH 178

Query: 146 KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
              + +IGR+   KI +  D  +  L VAGR LIY   E +F+QPN  IN  ML ++LA 
Sbjct: 179 SLGVSIIGRSKNQKILIGSDLQESSLNVAGRKLIYLHKEGNFSQPNPFINEKMLNFILAC 238

Query: 206 TKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            +   + DLLELYCG+GNFS+ LA  F+RV A E+ K ++     N   N + N+   R+
Sbjct: 239 LQDHPRRDLLELYCGSGNFSIALADSFERVFATEVVKSAIPVLLENARRNDITNLTAARL 298

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHILYISC 323
           S  E  QA+  ER+F RL+ +D+  + F  I VDPPRSG+ D   +  +Q +P+I+Y+SC
Sbjct: 299 SGLETMQALSFERDFFRLRGVDLRDFNFSHILVDPPRSGIGDIKMLHFLQKFPYIIYVSC 358

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           NP SL RD  ILS +H +   ALFDQFP+T H+E  ++L +
Sbjct: 359 NPHSLKRDFLILSQSHKVIHSALFDQFPHTHHVESIMILQK 399


>gi|296111048|ref|YP_003621429.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295832579|gb|ADG40460.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 500

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 88/390 (22%), Positives = 146/390 (37%), Gaps = 47/390 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QLA K D L Q +  FQ            I    P  YR +A+F +   GD 
Sbjct: 128 LEHMTYAAQLAFKKDVLVQSLEKFQPKGWSTYDLRNTIGMENPYEYRNKAQFPVRKIGDQ 187

Query: 58  LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106
           L   M+ + + + + +      +            L++ L + +    +    ++  + +
Sbjct: 188 LRVGMYKRSSHDLVDLPVVHTQNPATMKVLRTIRELLDKLSVSIYNEDKNRGTVKTIVAR 247

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTK 159
           + + T       VT       D A       +  AL       Q            ++T 
Sbjct: 248 VSHTTGDVQLTFVTNTDGFPGDTA---LIAAINQALPEVTGIFQNFNPGRTSLVWGDETI 304

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
               +DY++E +        ++    +F Q N      + +  L+A      D L++ Y 
Sbjct: 305 KLWGKDYIEETVMGK----TFQLSPRAFMQLNHTQMSVVYKEALSALNLTHADKLVDAYS 360

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +EI   +V+ A  N   NH+ N      +++E     + E  
Sbjct: 361 GVGTIGLSLADKVGEVRGMEIIPEAVDDANINAKINHIENAHYEIGTAEELFPKWQSE-- 418

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS 336
                      +    + VDPPR+GLD A    +++  P   +YISCN  +L RDL  L+
Sbjct: 419 ----------GWLADALVVDPPRTGLDTALRREILRTQPEKFVYISCNASTLARDLVDLT 468

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + +E +   D FP T   E  V L R+ 
Sbjct: 469 KAYKVEYIQSIDMFPQTARWEGVVKLTRRD 498


>gi|306831715|ref|ZP_07464872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325978654|ref|YP_004288370.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|304426140|gb|EFM29255.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325178582|emb|CBZ48626.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 453

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 149/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  ++   +     + ++++      + P  YR +A+  +      L    F 
Sbjct: 88  YAEQLKFKRKQVMDNLYKTAGISDIEVSETLGMAHPYAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + M I  +   +  I+ L     +++    L+P        L+R  + +  + + +
Sbjct: 148 KHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSGK 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
                VT    R       +   ++     A K  +Q I   N T +    +    Y  +
Sbjct: 208 MMLVFVT---TRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKN-TNVIFGNEFKTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +  +     Y     SF Q N  +   + +  +  +     D +++ Y G G   L  A
Sbjct: 264 TIIDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           ++   V  VE+ + +VE A+ N A N + N   V  S++       ++            
Sbjct: 324 KNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL +  +   V   P  I YISCNP S+ RD+ +     + + ++ 
Sbjct: 372 GIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPASMARDIKLYQELGYKLIKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E  VL+ R
Sbjct: 432 PVDLFPNTHHVETVVLMSR 450


>gi|323340242|ref|ZP_08080506.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323092433|gb|EFZ35041.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 464

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 149/384 (38%), Gaps = 42/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDG-D 56
           L    Y+ QL  K D + Q +  F+    +       I   +P HYR +A F +      
Sbjct: 92  LEHLNYDAQLDFKRDVILQALEKFKPRGYEKIELRKTIGMDDPYHYRNKAAFQVRMTKTG 151

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIR--------LEPLLRAKLF 105
            L   ++  ++   + +  F     L   I    + +M             +  ++  + 
Sbjct: 152 KLIAGLYKPESHHLVDLPTFETQRKLTLEIIRKTLALMEKWHVCAYDERTNKGTVKTLVV 211

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +  + T+++    VT    + +   +    R    +L   +         +   ++T   
Sbjct: 212 RESFATNEAQLVFVTNERFIAHASEIAAELRNEFPQLVSVMQNYNPGKTSLVYGDETTRI 271

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220
             RDY+ E+L      + ++    +F Q N      M + V  A    QG++L + YCG 
Sbjct: 272 FGRDYIIEKLG----DVSFKLSARAFFQMNPVQTKKMYDEVKQALNLKQGEILVDAYCGV 327

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L   +    VL +++   ++  A+ N A + + NV      +K+      +     
Sbjct: 328 GTIGLYCGKEAGLVLGMDVVSEAIADAKENAAMSGIKNVVYEEGDAKKIFAKWEKA---- 383

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                     +F  + VDPPR+GLDD T+ ++        +Y+SCNP +L RDL  L + 
Sbjct: 384 --------GQKFDALVVDPPRTGLDDETIKVILRNKPKKFVYVSCNPSTLARDLVSLVSK 435

Query: 339 HTIERLALFDQFPYTRHMECGVLL 362
           + +  +   D FP T   E  V L
Sbjct: 436 YDVSYIQPIDMFPQTARTEAVVKL 459


>gi|77919963|ref|YP_357778.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77546046|gb|ABA89608.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter carbinolicus DSM
           2380]
          Length = 489

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 152/387 (39%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             +L+   Y  QL  K  ++R+ + A+        +  +   EP+ YR  A+  +     
Sbjct: 112 GCSLMSMGYADQLDFKQTKVREALNAYPQLKGTDISPILAAEEPLGYRTSAKLAVARRNG 171

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRAKLF 105
            +   ++ + + E   I        L+N ++  +   I  +            LLR  L 
Sbjct: 172 RIVIGLYRRGSHEVADIGACPLHHPLVNRIVEVVREEIARQDIYLYNPVTRRGLLRYLLI 231

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           ++   T ++    VT         A  +   R    +       Q +  ++   + + R+
Sbjct: 232 KVSPATGKAMVTFVTAQREYKRITALAKWVAR---KIPEVVSVQQNVNASSG-NVIMGRE 287

Query: 166 YV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
            +       L      +  R    SF Q N      +   V         +  L+LYCG 
Sbjct: 288 TLRMVGQPDLFDQVGNIRLRISPTSFFQVNHAQAARIYALVRRWAALESHEFALDLYCGI 347

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +L LA+   RV+ VE+ + +V  A+ N A N++ N + +   + E            
Sbjct: 348 GGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAEL----------- 396

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILST- 337
            L+D+ +      T  ++PPRSG D   +  V Q  P  I+Y+SCNPD+L RDL+ L   
Sbjct: 397 -LQDLIVDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARDLAELQKL 455

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +    +   D FP T H+E    LV+
Sbjct: 456 GYRTAEIQPVDMFPQTAHVESVARLVK 482


>gi|138893992|ref|YP_001124445.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265505|gb|ABO65700.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
          Length = 463

 Score =  261 bits (668), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 86/383 (22%), Positives = 158/383 (41%), Gaps = 45/383 (11%)

Query: 9   QYEQQLAEKVDRLRQMML--AFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           QYE QL  K + ++ ++    F        I    P HYR + EF    +G    H   +
Sbjct: 96  QYEGQLRHKTEHVKALLEQHGFDPNIVRETIGMEHPWHYRNKMEFTFSPEGLLGLHEQGN 155

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
            +  + + ++  +     I    +E+    R            E LLR  + +  + T +
Sbjct: 156 FR--QIISLETCLIAGERIVKAAMEVARWARDHQLPGYHKDTHEGLLRHVMVRESFATGE 213

Query: 114 SDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRD 165
              A+  T      L  A  +   R+  AL   K  + L         +A +T +   RD
Sbjct: 214 VMVALFATEAPEGELKQAADDLTERITKALPEVKSLLWLENRAWADRIQAEQTHVLAGRD 273

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           ++ + L        YR   ++F Q N      ++E  L   K    + +++L+CG G FS
Sbjct: 274 FIYDELC----GFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHEKMIDLFCGVGTFS 329

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A+    +  +EI + S+E+A+ N   N ++N   +   ++              + +
Sbjct: 330 LPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFLARDAR------------RGIDE 377

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341
           +     R + + +DPPRSG     +  +       I+Y+SCNP++   D++ L    +T+
Sbjct: 378 VLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNPETFAADIAELVPFGYTL 437

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   D FP+T H+E   L+ R
Sbjct: 438 KTVQPVDMFPHTAHVELVALMSR 460


>gi|258515464|ref|YP_003191686.1| RNA methyltransferase, TrmA family [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779169|gb|ACV63063.1| RNA methyltransferase, TrmA family [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 458

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 136/388 (35%), Gaps = 41/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPN----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y +QL  K   +R  +     +P+      I    P +YR +   H     +
Sbjct: 86  GCQLQHSSYAEQLKLKEKFVRDNLKRISGLPDAVVLPTIGMENPWNYRNKIHLHAGRKNN 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL------------LINALMIEMMATIRLEPLLRAKL 104
                 F + +   +        +             LIN   +E       + LLR  +
Sbjct: 146 RTVLGFFSEGSHILVEGTACCQINDGRLNEISAILEDLINKYKLEPYNKHSKKGLLRGVM 205

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +    T Q    +VT+  +                 +   +         +   +  K+
Sbjct: 206 LRKAEATGQVMLVLVTVSGNLPGQSTFTRELVNQCPDITSIIRNINNGNNSLLLGSVNKL 265

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCG 219
              +    E +    + L +    NSF Q N    + + +  L  A       +L+ YCG
Sbjct: 266 IWGK----EIIVDKIKDLSFYISANSFYQINPKQTIKLYDKALEYAELKGNETVLDAYCG 321

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  ++  + +  +V  +E    +V+ AR N A N +NNV+ +    ++           
Sbjct: 322 IGTIAMYFSANARKVTGLESLNIAVKDARENAALNRLNNVEFLCGEVEKL---------- 371

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
             L +    +     I +DPPR G     +  +     P I+Y+SCNP +L RDL +L  
Sbjct: 372 --LPEFAERNNNVDIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLARDLGLLDK 429

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364
             + I  +   D FP T H+E    L +
Sbjct: 430 LGYGIIEVQPVDMFPQTSHIEICTFLSK 457


>gi|295397194|ref|ZP_06807297.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
           11563]
 gi|294974583|gb|EFG50307.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
           11563]
          Length = 464

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 154/392 (39%), Gaps = 49/392 (12%)

Query: 3   GTLL--IDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG 55
           GT+      YE QLA K  ++      F +         +   +   YR +A+  I  D 
Sbjct: 90  GTMPLQHMTYEAQLAFKQKQVENAFSRFGLAEGREVLPTVGSEDTFKYRNKAQIPIGADD 149

Query: 56  DDLYH-IMFDQQTKERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103
           +   +   + + + E + ++ F      I           N   ++     +   L+R  
Sbjct: 150 EGQLYSGFYRKNSHEIIPVEDFKIQLPGIDEAIASIVDIFNQHGLKGYDEGKHSGLIRNI 209

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRAN 156
           + +  Y T   +Q +V ++ +        +    + + L      +            + 
Sbjct: 210 VIRKGYYT---NQMMVIIVINGKDLPEENQIVTEIVEKLPEVVSIVLSSNTKQTNFVMSG 266

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLE 215
           K ++    D  ++++        +     SF Q N      + +  + AA    +  +++
Sbjct: 267 KQRVLYGVDKYEDKM----FDFTFDISSRSFFQINTPQAEKLYQLAIDAADLTGEETVVD 322

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  +L LA+    V  VE+   +V+ A+ N A N++NNV      ++       +
Sbjct: 323 AYCGIGTITLALAKKAKHVYGVEVVGDAVKMAKNNAAKNYINNVHFETGQAETVMGEWVK 382

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLS 333
                          +   + VDPPR GL+D  +   ++A P  I+Y+SCNP ++ RD++
Sbjct: 383 A------------GVQPDVVVVDPPRKGLEDTFIESTIEANPEKIVYVSCNPTTMARDIA 430

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                 +  E++   D FP T H+EC VL+ +
Sbjct: 431 KFVEAGYDFEQVQPLDMFPQTWHVECVVLMQK 462


>gi|227432075|ref|ZP_03914088.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352157|gb|EEJ42370.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 464

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 135/379 (35%), Gaps = 39/379 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +YE QLA K  ++ ++     V       I    P  YR +A+  +      L    + +
Sbjct: 99  KYEAQLAFKQHQIEELFKKINVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLETGFYRR 158

Query: 66  QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            +   + I+ F      ++            L +        + ++R  + +  Y + + 
Sbjct: 159 GSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSAYEEETKKGVIRHIMARRGYYSHEL 218

Query: 115 DQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
              I+T        D   E        L+  +H        +      +     D + ++
Sbjct: 219 MVVIITNTKKLPNSDLIAEKLSAKLPELKSVIHNINNHDTNVIMGQWNETIWGEDDIHDQ 278

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR 229
           L        +    NSF Q N      +             D++ + Y G G  +L +A 
Sbjct: 279 LMGKD----FVIGPNSFYQVNPQTTATLYALAAEKANLKPTDVVVDAYSGIGTITLSVAD 334

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              ++  V++ + ++E A  N   N + N + V   + E       E             
Sbjct: 335 KVKKIYGVDVVEGAIEDAEKNAKNNQITNAEFVLADAPEQMAKWADE------------G 382

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIE-RLA 345
            +   +FVDPPR GL    +  V+A      +YISCNP +L RD   IL+    IE  + 
Sbjct: 383 LKPNVVFVDPPRKGLTQELIDAVKAMNPEKFVYISCNPATLTRDAVQILAAGFEIEGAVQ 442

Query: 346 LFDQFPYTRHMECGVLLVR 364
             DQFP T H+E   +  +
Sbjct: 443 PLDQFPQTTHVESITVFKK 461


>gi|225388129|ref|ZP_03757853.1| hypothetical protein CLOSTASPAR_01864 [Clostridium asparagiforme
           DSM 15981]
 gi|225045790|gb|EEG56036.1| hypothetical protein CLOSTASPAR_01864 [Clostridium asparagiforme
           DSM 15981]
          Length = 452

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 144/385 (37%), Gaps = 43/385 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLY 59
            G  ++D +YE+QL  K + L + +         I   +P HYR +       D   ++ 
Sbjct: 76  GGCQMLDMEYEKQLEWKRNYLEEQLKGLCPVKGIIGMKDPYHYRNKVHAVFDRDRRGNII 135

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQID 108
             ++ + +   + ++  +      + +            I          LLR  L +  
Sbjct: 136 SGIYQENSHIVVPVERCLIEDQKADEIIGTIRGMLKSFKIRTYDEDTGFGLLRHVLVRRG 195

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161
           + T +    +VT      +  +       LR+        +Q +           K  + 
Sbjct: 196 FATGEIMVVLVTA---SPVFPSKNNFVKALREKHPEITTIVQNVNGRGTSMVLGEKEHVL 252

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             + Y+++ L        +R    SF Q N      +    L  A    +  +L+ YCG 
Sbjct: 253 YGKGYIEDMLC----GCRFRISSKSFYQVNPVQTEVLYGKALELAGLTGKETVLDAYCGI 308

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L+ +R    V+ VE+ + +V+ A  N   N + N K     + +F           
Sbjct: 309 GTIGLIASRKASSVIGVELNRDAVKDAVNNAKINGITNAKFYCNDAGKF----------- 357

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337
            L D+     +   + +DPPRSG  +  +  V       ++Y+SCNP++L RDL ++   
Sbjct: 358 -LVDMAERGDKVDLVIMDPPRSGSTEEFMESVARMGVEKVVYVSCNPETLGRDLRVMKKL 416

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            +        D F  TRH+E  +++
Sbjct: 417 GYGAVEGWGVDMFAGTRHVESVIMM 441


>gi|254303473|ref|ZP_04970831.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323665|gb|EDK88915.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 462

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 161/384 (41%), Gaps = 34/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M     + +++I       +  +YR +         +
Sbjct: 91  GCDFAMLKYESQLKYKKLMVEEVMRKIAGLSDIKISDVLASEDVYNYRNKIIEPFSVYAN 150

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++ E+   +    +        +  L  I  
Sbjct: 151 KIITGFFRRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNIMI 210

Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--- 165
            T+ +++A+V LI +   + +  ++   +LR+ +   K  I +   + KT   +  +   
Sbjct: 211 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGENNVF 269

Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y +E +      + +     SF Q N      + +  ++    I    +++ Y G G  
Sbjct: 270 IYGEESIKENINGIEFHISPTSFFQINVKQAKRLYDIAISFFDDIDNKYIIDAYSGTGTI 329

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++A+   +V A+EI K + E        N + N++ +    ++             L 
Sbjct: 330 GMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGPVEK------------ELV 377

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
            +  ++ R  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 378 KLINNNKRIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 437

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +++L   D FP T H+EC  L+ +
Sbjct: 438 LKKLQAVDMFPQTSHIECVGLIEK 461


>gi|170016553|ref|YP_001727472.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20]
 gi|169803410|gb|ACA82028.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20]
          Length = 498

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 145/390 (37%), Gaps = 47/390 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QLA K D + Q +  FQ            I  + P  YR +A+F +    D 
Sbjct: 128 LEHMTYSAQLAFKKDVIAQSLEKFQPKGWSDYDLRDTIGMANPYEYRNKAQFPVRKIDDV 187

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L   M+ + + E + +      S            L++ L + +    +    ++  + +
Sbjct: 188 LSVGMYKRGSHELVDLPIVHTQSPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVKTIVAR 247

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI------ 160
           + + T       VT       D A       +  AL       Q       + +      
Sbjct: 248 VSHTTGDVQLTFVTNTDGFPGDVA---LIAAINQALPEVNGIFQNFNPGRTSLVWGEETI 304

Query: 161 -CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
               +DY++E +        ++    +F Q N      +    L+A      D L++ Y 
Sbjct: 305 KLWGKDYIEETVMGK----TFQLSPRAFMQLNHTQMTVVYNEALSALNLTHADKLVDAYA 360

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +EI   +V+ A  N   NH++N K    +++      + E  
Sbjct: 361 GVGTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYEVGTAEVLFPKWQAE-- 418

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS 336
                      +    + VDPPR+GLD A    +++  P   +YISCN  +L RDL  L+
Sbjct: 419 ----------GWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDLVDLT 468

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + ++ +   D FP T   E  V L R+ 
Sbjct: 469 KAYKVDYIQSIDMFPQTARWEGVVKLTRRD 498


>gi|148380817|ref|YP_001255358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 3502]
 gi|148290301|emb|CAL84425.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC
           3502]
          Length = 456

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 149/392 (38%), Gaps = 47/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55
             +     YE+QL  K ++L ++  + ++            E   YR + EF       G
Sbjct: 84  GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 143

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103
            DL   M  +      + +D                    N   +     +  E  LR  
Sbjct: 144 GDLTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT                  EC   ++  LH     +  + + +K
Sbjct: 204 VIRKAKNTGEILVNIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            +I   RDY+ E L      L ++    +F Q N+     +   V          ++ +L
Sbjct: 264 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A    +V+ VE+ + +V+AA  N   N +NN + +     +  + +++ 
Sbjct: 320 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 378

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 379 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 424

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L    + +E++   D FP+T H+EC V + +K
Sbjct: 425 LIDNGYKLEKVKGMDMFPHTPHVECVVKIEKK 456


>gi|116493460|ref|YP_805195.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103610|gb|ABJ68753.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC
           25745]
          Length = 491

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 142/381 (37%), Gaps = 41/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D +RQ +  F+            I   +P+ YR +A+F +      +   +
Sbjct: 127 YPAQLEFKRDVIRQSLTKFRPEGYKRFELLPTIGMEKPLEYRNKAQFQVRRLDGKVAAGL 186

Query: 63  FDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPL--------LRAKLFQIDYLT 111
           + + T + + +        L   I  + +E+     +           L+  + ++   T
Sbjct: 187 YKEGTHDLVDLPTCSVQHPLTMEIIRIAVELFEKYNVSIYDEQTHTGSLKTIVVRVADAT 246

Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
            ++    +T    L +   + D        +   +       + +   +KT     +D +
Sbjct: 247 KETQVVFITNTPELEHVDEIIDELAAQFPEIVSFMQNLNPSRESLIWGDKTLNLRGKDTI 306

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLV 226
            E L      L +     +F Q N      +  E   A       +L++ Y G G   L 
Sbjct: 307 REEL----DGLSFNLSARAFFQLNPKQTSVLYAETRKALELSPDDNLVDAYSGVGTIGLS 362

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  ++  + ++E A  N   N + N      ++++             L    
Sbjct: 363 LAAQAKEVRGMDNIESAIEDANENAKINGIENAHYEFGTAEKV------------LPKWL 410

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
              ++  +I VDPPR GLD+  +  +   A  H  Y+SCNP +L RDL  +   + +E +
Sbjct: 411 HAGFKPNSIVVDPPRVGLDNKLITAILESAPEHFTYVSCNPSTLARDLVRIVEKYDVEYI 470

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP T  +E  V L RK
Sbjct: 471 QSIDMFPQTARVEAVVKLKRK 491


>gi|161508136|ref|YP_001578104.1| methyltransferase [Lactobacillus helveticus DPC 4571]
 gi|160349125|gb|ABX27799.1| Methyltransferase [Lactobacillus helveticus DPC 4571]
          Length = 448

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 152/384 (39%), Gaps = 42/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDLYH 60
           L   +Y++QL  K  ++++++    +  +++  + P      YR +A+  +      L  
Sbjct: 79  LAHLKYDKQLEFKQKQVKELLSKAHLDQIKVAETLPSPLETGYRNKAQVPVRMVKGQLEI 138

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109
             F + + + + ++ F      I+ +++ +   +R + +           +R    +   
Sbjct: 139 GFFRRHSHDLVPLEDFFTNDPEIDRVLLAVRDILREKRIPAYDEEKHQGQVRYLEVRRGT 198

Query: 110 LTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            T      +V L       H ++D+      +  +        +   +           +
Sbjct: 199 ATGDMMVVLVCLDRDFPGLHAVVDEIKEIAGV--KSIFLNHNPKRTNVILGEHDYHLWGK 256

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
            Y+D+++      L +     SF Q N+    H+ +  +      + DL+ + Y G G  
Sbjct: 257 RYIDDKIG----DLTFEISPQSFFQINSLQTPHLYKLAINQAGLTKDDLIVDAYSGIGTI 312

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A++   V  VE+ K +V+ A+ N   N ++N K     ++E       E       
Sbjct: 313 GLSAAKYVKEVRGVEVIKAAVKDAKNNARLNQIHNAKYYVGKAEELMPKWAAE------- 365

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL    +          ++YISCNP +L RD+ +L    +T
Sbjct: 366 -----GLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQLLMEAGYT 420

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
            + ++  D FP T H+E   +L R
Sbjct: 421 TDLVSPVDMFPQTPHVESVTVLER 444


>gi|238917056|ref|YP_002930573.1| hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
 gi|238872416|gb|ACR72126.1| Hypothetical protein EUBELI_01126 [Eubacterium eligens ATCC 27750]
          Length = 389

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/384 (19%), Positives = 149/384 (38%), Gaps = 37/384 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-YH 60
                  +Y+ +LA K   + ++   +   +  +    PIHYR +    +  D       
Sbjct: 22  GCDYAGMKYDNELAVKQKYIEELFGEYVKVDDIVGMYRPIHYRNKVHAVVGLDDSRNVIA 81

Query: 61  IMFDQQTKERMRIDYFMP---GSLLINALMIEMMATIRLEPL--------LRAKLFQIDY 109
             +++ +   +     M        I   + E++A+ + +P         +R  L +  +
Sbjct: 82  GTYEENSHRIVDTSDCMIEDSQCTDIIKDIKELIASFKYQPYDEDAGKGMIRHILLRKGF 141

Query: 110 LTSQSDQAIVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
            T +    IVT        + +     E   ++   +     +   +   N+  +   + 
Sbjct: 142 STKEIMLVIVTAGVAFPSKNNFLKVLCEKHPKITTIVQNINDRRTSMVLGNRNIVLKGKG 201

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           Y+++ L        +R    SF Q N      + +  +  A       +++ YCG G   
Sbjct: 202 YIEDVLC----GCRFRISPTSFYQINHQQTEKLYKKAIQLADISKNDTVIDAYCGIGTIG 257

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           +V ++   +V+ VE+   +V  A+ N + N++ NV  V   + +F     +         
Sbjct: 258 IVASKKAGKVIGVELNSEAVSDAKINASINNIKNVTFVNADAGDFLVEYAK--------- 308

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTI 341
               + +   + +DPPRSG     +  +       I+YISC PD+  RD+ +L    + +
Sbjct: 309 ----NAKADVVIMDPPRSGSTPEFLNSLLKIKPDRIVYISCGPDTQARDIKVLIKGGYKV 364

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
                FD FP+T H+E  +LL RK
Sbjct: 365 TACQPFDLFPHTEHVENVILLSRK 388


>gi|295102269|emb|CBK99814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii L2-6]
          Length = 384

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/387 (19%), Positives = 144/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60
              +L  +Y  QL +K   +R +++ +   +       P HYR +            L  
Sbjct: 12  GCPMLATEYAAQLKKKEADVRALLVKYGPVSPIRGMETPYHYRNKVISTFAPAACGKLTS 71

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDY 109
            ++  +T + + ++  +    +++ +M+ + A                 LLR  L +   
Sbjct: 72  GIYAARTHKVLPVESCLLQDEVLDKVMLAVRAAANACRYQPFNEDKGTGLLRHCLLRRGV 131

Query: 110 LTSQSDQAIVTL--------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            T Q    +VT          + + L     +  + +   +     +   +      K+ 
Sbjct: 132 ATGQVMVVLVTAQPVLTGAKNFVKALLAEAEKRGVPVTTVVQNYNPRRTSVVLGEDEKVL 191

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             + ++ + L        Y     SF Q N      +    + A      ++ L+ YCG 
Sbjct: 192 YGKGFILDTLCGK----TYALSPRSFYQVNPVQTAVLYGLAVDAAHLTGKEVVLDAYCGI 247

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L  +    +V+ VE+ + +V  A  N   N V N +     +  + +         
Sbjct: 248 GTIGLTASDKARQVVGVEVNRDAVRDAIGNAKHNGVKNARFFAADATAWIR--------- 298

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-T 337
              +      +   IF+DPPR G   A +  V   A   I+Y+SCNP+++ RDL++L+  
Sbjct: 299 ---EAADAGQKADVIFMDPPREGSTPAFLESVARMAPKRIVYVSCNPETMARDLALLTQK 355

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +  E     D FP++ H E    LVR
Sbjct: 356 GYRAEGFTPVDMFPHSAHCEVVGSLVR 382


>gi|332200601|gb|EGJ14673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA41317]
          Length = 451

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 154/385 (40%), Gaps = 40/385 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   IR              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLIRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D++ + Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAIDFAELKKDDVIIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++       
Sbjct: 319 GLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++++   D FP T H+E   LLV++
Sbjct: 427 LKKVQPVDLFPQTHHVEAVSLLVKE 451


>gi|170757395|ref|YP_001782496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B1 str. Okra]
 gi|169122607|gb|ACA46443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B1 str. Okra]
          Length = 458

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 149/392 (38%), Gaps = 47/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55
             +     YE+QL  K ++L ++  + ++            E   YR + EF       G
Sbjct: 84  GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 143

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103
            DL   M  +      + +D                    N   +     +  E  LR  
Sbjct: 144 GDLTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT                  EC   ++  LH     +  + + +K
Sbjct: 204 VIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            +I   RDY+ E L      L ++    +F Q N+     +   V          ++ +L
Sbjct: 264 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A    +V+ VE+ + +V+AA  N   N +NN + +     +  + +++ 
Sbjct: 320 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 378

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 379 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 424

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L    + +E++   D FP+T H+E  VLL RK
Sbjct: 425 LIDNGYKLEKVKGMDMFPHTPHVETCVLLQRK 456


>gi|325969983|ref|YP_004246174.1| RNA methyltransferase, TrmA family [Spirochaeta sp. Buddy]
 gi|324025221|gb|ADY11980.1| RNA methyltransferase, TrmA family [Spirochaeta sp. Buddy]
          Length = 390

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 151/390 (38%), Gaps = 47/390 (12%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHI 61
             L+   Y +QL  K+  L  ++  F          +P  YR + +    +D  D L   
Sbjct: 16  CQLMDYSYSKQLEMKMAYLEDLLGQFGPIAPIQGMDDPTSYRTKVQATFGYDWKDSLVSG 75

Query: 62  MFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKLFQIDYL 110
           ++ + T   + I   M    L +              I           LR  L +I   
Sbjct: 76  IYQEGTHLLVPIRTCMVQHPLADSILKTIRNLATRFQITAYDEDEGYGYLRHVLIKISRK 135

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT---------KIC 161
           T+++   +V   +     D +    I      H     I L     +T         K+ 
Sbjct: 136 TNEAMVVLVCAQWPIPSSDNF----IAALKQQHPEITTIALNMNREQTSMVLSEIPIKVL 191

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220
             + Y++E L     +L +R   +SF Q N      +    +   +    D++ + YCG 
Sbjct: 192 WGKGYIEEELC----SLTFRISHSSFFQVNVEQAQVLYTLAMRMAQIDNDDVVVDAYCGT 247

Query: 221 GNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           G  +L+ A+    +V+ +E  + +VE A+ N   N++ N + +   +             
Sbjct: 248 GTIALIAAKEGAKQVIGIESNEQAVEDAKLNAERNNLTNAEFICADASA----------- 296

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
             LK++         +F+DPPRSG D+  +      A   I+YISCNP +L RDL  L  
Sbjct: 297 -HLKEMSKAKQSCDVLFLDPPRSGSDERFLAAAIRLAPKRIVYISCNPKTLERDLRYLLR 355

Query: 338 --THTIERLALFDQFPYTRHMECGVLLVRK 365
              + +  +   D FP+T H+E  VL+ R+
Sbjct: 356 FSDYEVSGIQPVDMFPHTEHLETVVLMTRR 385


>gi|315653825|ref|ZP_07906741.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC
           55195]
 gi|315488521|gb|EFU78167.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC
           55195]
          Length = 447

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 153/385 (39%), Gaps = 39/385 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             L   +YE+QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108
              F + + + + +  F+     I+A ++ +              I+    +R    +  
Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167
               Q    +V L       DA  +    L D        + L    +KT + L  ++Y+
Sbjct: 200 KANDQLMIVLVCLHKSFKNLDAVVQAIKSLDDVAC-----VILNHNPHKTNVILGEKEYI 254

Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
              +  +      L ++    SF Q N+     +    +   +    D+ ++ Y G G  
Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTADDVVIDAYSGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E       E       
Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL D  +      +   I+YISCNP ++ RDL I  +  + 
Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAGYD 422

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
            + +   D FP T H+EC VL+ RK
Sbjct: 423 FDCIDPVDMFPQTPHVECVVLMSRK 447


>gi|222151850|ref|YP_002561010.1| tRNA (uracil-5-)-methyltransferase family protein [Macrococcus
           caseolyticus JCSC5402]
 gi|222120979|dbj|BAH18314.1| tRNA (uracil-5-)-methyltransferase family protein [Macrococcus
           caseolyticus JCSC5402]
          Length = 459

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 142/388 (36%), Gaps = 41/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP------NLQIFRSEPIHYRMRAEFHIWHDG 55
              L    Y  QL  K   +   +  +                 P  YR + +F +   G
Sbjct: 84  GCQLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIKDVKGMHNPYTYRNKNQFPVEKTG 143

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKL 104
             +   ++ + +   + +   +               +++ L I+       E  +R  +
Sbjct: 144 RKVRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEVKKIMSELNIDACKNPMREKGVRHIV 203

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            ++   T +     VT   H    D   E  +RL          + L     KT I +  
Sbjct: 204 TRVALATGEIQVVFVTNTRHLKKQDLLAERVMRLAGV-----KSVALNINTEKTSIVMGD 258

Query: 165 DYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCG 219
           + +    +E +    +  IY     SF Q N    V +   V  AA    Q ++++ +CG
Sbjct: 259 ETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEVRDAAALTGQENVVDAFCG 318

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   + LA +   V  ++  +  +  A YN   N  +N K     + E           
Sbjct: 319 TGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEVGDASE----------- 367

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
            +L +     +    I VDPPR+GL +AT+ ++        +Y SCNP +L +DL+ L+ 
Sbjct: 368 -KLNEWIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLAHLTK 426

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
              +E +   D FP T  +E  V L RK
Sbjct: 427 AFQVEYIQPVDMFPQTAQVEAVVKLTRK 454


>gi|218132971|ref|ZP_03461775.1| hypothetical protein BACPEC_00832 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991844|gb|EEC57848.1| hypothetical protein BACPEC_00832 [Bacteroides pectinophilus ATCC
           43243]
          Length = 405

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 155/383 (40%), Gaps = 34/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYH 60
                   Y++QL +K +  ++++ ++   +  I   +P HYR +       D  +++  
Sbjct: 38  GCAYQGIAYKEQLDKKQEYEQKLLSSYGSVSRIIGMDKPYHYRNKVHAAFGRDRYNNIIC 97

Query: 61  IMFDQQTKERMRIDYFMPGS-------LLINALM----IEMMATIRLEPLLRAKLFQIDY 109
             +++ +   +     +           +I  L     +++        LLR  L +  +
Sbjct: 98  GSYEESSHRIVDNTACLIEDTRAKAIIEVIRRLAGDFGLKIYDERNGTGLLRHVLIRTGH 157

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
              +S Q +V L+       + +     L          +  I     + I  DR Y + 
Sbjct: 158 ---KSGQILVILVMASTFFPSKKNFIRELIRECPEITSVVININNRRTSMILGDRQYTEY 214

Query: 170 RLTVAGRTL---IYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225
                  TL    YR    SF Q NA     +    +  A       +++ Y G G   +
Sbjct: 215 GSGYIEDTLCGITYRISPKSFYQVNAVQTELLYTKAIELARLTGSETVIDAYSGIGTIGM 274

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A H  +V++VE    +V+ AR N  AN+++N+ I    +  F + M    E       
Sbjct: 275 TVAGHVRKVISVETNTDAVKDARRNAKANNISNIDIYADDAGRFMRRMADNNE------- 327

Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIE 342
                    IF+DPPR+G D   +  +++  P  ++YISC P++L RDL++L+   + + 
Sbjct: 328 -----TCDVIFMDPPRAGSDKVFLNSILKLMPSKVIYISCCPETLARDLAVLARRAYRVA 382

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T  +E  V L R+
Sbjct: 383 AIQPVDMFPWTSGIETIVCLERR 405


>gi|167748614|ref|ZP_02420741.1| hypothetical protein ANACAC_03387 [Anaerostipes caccae DSM 14662]
 gi|167651928|gb|EDR96057.1| hypothetical protein ANACAC_03387 [Anaerostipes caccae DSM 14662]
          Length = 543

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 148/397 (37%), Gaps = 47/397 (11%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEP--IHYRMRAEFHIW--HDG 55
            G       YE QL  K  ++R+++  +      +  +  P    YR + EF       G
Sbjct: 79  GGCFYQTVSYENQLRIKEGQVRELLKDYISDETWEGIKGSPKWWEYRNKMEFSFGDEVKG 138

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAK 103
             L   M  + T  + + I          N L+  ++             +  E  LR  
Sbjct: 139 GPLALGMHKKNTFHDIVNITDCKIVDNDYNLLVSCVLNYFSESGCDFYHKMSHEGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIR--LRDALHARKYQIQLIGRANK 157
           + +           IVT     +  + L +      +   +R  LH     +  + +A++
Sbjct: 199 VIRRSEANGDLLINIVTTSQADVDMKPLAEEMLSLPLSGSIRGILHTVNDSLADVVQADR 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            +     D+  E +      L ++    SF Q N+     + E         +  ++ +L
Sbjct: 259 METIYGEDFFYEEIL----GLKFKISPFSFFQTNSLGAEVLYETAREYVGETKDKVIFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  + +LA    +V+ VEI   +VEAAR N   N ++N + +              
Sbjct: 315 YSGTGTIAQMLAPVAKKVVGVEIVGEAVEAARENAGLNGLDNCEFIAGDV---------- 364

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
                LK ID    +   I +DPPR G+    +  +       ++YISC P SL RDL I
Sbjct: 365 -----LKVIDELEDKPDFIVLDPPRDGIHPKAIQKIIDFGVEKMVYISCKPTSLARDLEI 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
                + +ER    D FP T H+E   LL +  S  H
Sbjct: 420 FREAGYEVERGGCVDMFPSTVHVEVVCLLSKLKSDKH 456


>gi|297583617|ref|YP_003699397.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297142074|gb|ADH98831.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
           MLS10]
          Length = 464

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 150/382 (39%), Gaps = 45/382 (11%)

Query: 10  YEQQLAEKVDRLRQMML--AFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QLA K + ++  +    F        I   EP HYR + EF    DG    H   + 
Sbjct: 100 YESQLAHKTESVKNGLEEQGFDPGRVKPAIGMKEPWHYRNKMEFTFSTDGKMGLHEQGNF 159

Query: 66  QTKERMRIDYFMPG-SLLINALMIEMMATIRLE----------PLLRAKLFQIDYLTSQS 114
           +    + ++  +   + +++A MI        E           LLR  + +  + T + 
Sbjct: 160 R--GIIPLETCLIAGNEMVDAAMIVSNWAKEFELPGYDKDAHTGLLRHLMVRQSFNTGEI 217

Query: 115 DQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDY 166
              +  T      LD A RE   R+       K  + L         ++ +T     RDY
Sbjct: 218 MLGVFATASPDGELDRAVRELISRIERNAPQVKSVMWLENNDWADRAQSEETHCLFGRDY 277

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           + + +        +R   ++F Q N      +++  L   K    + +++L+CG G FSL
Sbjct: 278 IYDEMA----GYRFRLWFDTFFQTNPRQAEVLVDEALKLGKPEAHEKMIDLFCGVGTFSL 333

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     +  +EI + S+ +A+ N   N + N   +   +++    M  E     L   
Sbjct: 334 PFASRVKALAGIEIVESSIASAKRNAEDNGLVNTTFLAKDARKGIDQMLEEFGHPEL--- 390

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                    + +DPPRSG     +  +       I+Y+SCNPD+   D   L    + +E
Sbjct: 391 ---------LMLDPPRSGAGGKVMRRIGRAKPDRIVYVSCNPDTFATDCKELEPFGYQLE 441

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +   D FP+T H+E   LL R
Sbjct: 442 SVQPVDMFPHTFHVELVALLTR 463


>gi|24380145|ref|NP_722100.1| putative RNA methyltransferase [Streptococcus mutans UA159]
 gi|50401574|sp|Q8DSK3|Y1779_STRMU RecName: Full=Uncharacterized RNA methyltransferase SMU_1779c
 gi|24378145|gb|AAN59406.1|AE015005_12 putative RNA methyltransferase [Streptococcus mutans UA159]
          Length = 459

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 138/388 (35%), Gaps = 39/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D L+Q +  F+    +       I    P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLDFKKDLLKQALKKFKPQGYETYDIRATIGMEHPQHYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAK 103
           G  +   +F +Q+   + I   +               L++   I +    R    +R  
Sbjct: 141 GGSVRAGLFKEQSHHLVDIKDCLIQDELTQKIVNRVCQLLDDYNIPVYDERRHFAGVRTI 200

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLD--DAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           + +    T+Q     VT     L+            ++                 KT+I 
Sbjct: 201 MVRKSQATNQVQLIFVTSKEVNLVGIIRDLTGYFPEIKTVAVNFNSSKSSAIYGQKTEIL 260

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
              D + E +        +     +F Q N      +    L A      D L++ YCG 
Sbjct: 261 WGIDSISEEVL----DYSFSLSPRAFYQLNPQQTQVLYHQALQALDVTAEDHLIDAYCGV 316

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+  L  A     V  ++I   ++  A+ N       N       ++       ++    
Sbjct: 317 GSIGLAFANKVKSVRGMDIIPEAITDAKRNAERMGYTNTYYEMGKAENVIPKWYKD---- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    Y+   + VDPPR+GLD+  +  +  Y    ++Y+SCN  +L RDL  L   
Sbjct: 373 --------GYQASALIVDPPRTGLDEKLLKTLLTYQPEKMVYVSCNVSTLARDLVQLVKV 424

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366
           + +  +   D FP+T   E  V LV++ 
Sbjct: 425 YEVNYIQSVDMFPHTARTEAVVKLVKRK 452


>gi|322376702|ref|ZP_08051195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M334]
 gi|321282509|gb|EFX59516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M334]
          Length = 451

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 148/382 (38%), Gaps = 46/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +              +    P+ YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGIADVGVAETLGMEHPVKYRNKAQVPVRRVNGILETGFFH 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + + I+ F     +I+ L++ +   +R              L+R  + +  + +  
Sbjct: 148 KNSHDLLPIEDFFIQDSVIDELVVALRDLLRRYDLKPYDEKEQAGLIRNLVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-------CLDRDY 166
             Q +V L+  R       +   +L          +Q I   N   I          +D+
Sbjct: 207 --QIMVILVTTRPKIFRVEQLIEQLVKQFPEIVSVMQNINDKNTNAIFGKEWHTLYGQDF 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
           + +++        Y+    +F Q N  +   + +  +        D+ ++ Y G G   L
Sbjct: 265 ITDQMLGND----YQISGPAFYQVNTKMAEKLYQTAIDFAALKSDDVVIDAYSGIGTIGL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+    V  VE+   +VE +  N   N+++N   V  +++   ++  ++         
Sbjct: 321 SVAKLVKEVYGVEVIPEAVENSEKNAQLNNISNAHYVCDTAENAMKSWLKD--------- 371

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIE 342
                +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++
Sbjct: 372 ---GIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYRELGYELK 428

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           ++   D FP T H+EC  LLV+
Sbjct: 429 KVQPVDLFPQTHHVECVALLVK 450


>gi|225871008|ref|YP_002746955.1| RNA methyltransferase [Streptococcus equi subsp. equi 4047]
 gi|225700412|emb|CAW94786.1| putative RNA methyltransferase [Streptococcus equi subsp. equi
           4047]
          Length = 455

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 148/386 (38%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-------RSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D +RQ +  F+    + F        +EP HYR + +F     
Sbjct: 81  GCQIMHLAYPKQLYFKDDIIRQALKKFKPKGYEEFEIRHTLGMAEPQHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPL-------LRAKL 104
           G  +   +F + +   + ID  +    L   I   + +++   R+          +R  +
Sbjct: 141 GGSVKAGLFSEGSHCLVAIDDCLVQDQLTQAIVNHVTQLLDRYRIPIYNERRVAGIRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    + Q     V+    RL  L         ++R                 KT+I  
Sbjct: 201 VRRAQASDQVQLIFVSSKEVRLAGLIAELTAAFPQIRTVALNINTSKTSDIYGAKTEILW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            ++ + E +     +  +     +F Q N      +   V+ A +    + +++ YCG G
Sbjct: 261 GQETIQEEVL----SHSFALSPRAFYQLNPTQTEVLYSQVVQALEPTAEEHIIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +  L +A     V  ++I   ++  AR N  A   +N       ++E   +   E     
Sbjct: 317 SIGLAVANKVRSVRGMDIIPEAIADARKNAQALGFDNAYYETGKAEELIPSWYAE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLQTILHYQPAKMVYVSCNTSTLARDLVPLVQVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L ++
Sbjct: 425 DVIYIQSVDMFPHTARTEAVVKLQKR 450


>gi|317470873|ref|ZP_07930254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
           3_2_56FAA]
 gi|316901700|gb|EFV23633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
           3_2_56FAA]
          Length = 452

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 146/392 (37%), Gaps = 47/392 (11%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEP--IHYRMRAEFHIW--HDG 55
            G       YE QL  K  ++R+++  +      +  +  P    YR + EF       G
Sbjct: 79  GGCFYQTVSYENQLRIKEGQVRELLKDYISDEKWEGIKGSPKWWEYRNKMEFSFGDEVKG 138

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAK 103
             L   M  + T  + + I          N               +    +  E  LR  
Sbjct: 139 GPLALGMHKKNTFHDIVNITDCKIVDNDFNLLVSCALNYFSQSGCDFYHKMSHEGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIR--LRDALHARKYQIQLIGRANK 157
           + +   +       IVT     +  + L +      +   +R  LH     +  + +A++
Sbjct: 199 VIRRSDVNGDLLINIVTTSQADVDMKPLAEEMLSLPLSGSIRGILHTVNDSLADVVQADQ 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            +     D+  E +      L ++    SF Q N+     + E         +  ++ +L
Sbjct: 259 METIYGEDFFYEEIL----GLKFKISPFSFFQTNSLGAEVLYETAREYVGETKDKVIFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  + +LA    +V+ VEI + +VEAAR N   N + N + +              
Sbjct: 315 YSGTGTIAQMLAPVAKKVVGVEIVEEAVEAARENAGFNGLENCEFIAGDV---------- 364

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
                LK ID    +   I +DPPR G+    +  +       ++YISC P SL RDL I
Sbjct: 365 -----LKVIDELEDKPDFIVLDPPRDGIHPKAIQKIIDFGVEKMVYISCKPTSLARDLEI 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
                + +ER    D FP T H+E  VLL RK
Sbjct: 420 FREAGYEVERGECVDMFPSTVHVETVVLLERK 451


>gi|297545003|ref|YP_003677305.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842778|gb|ADH61294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 450

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 156/392 (39%), Gaps = 48/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGDD 57
             T     Y +QL  K + +++++    + + +   I +S   H YR + E+    D + 
Sbjct: 79  GCTYQNVDYLEQLKIKENIVKKLLEKEGIKDYKFLGIVKSPKEHGYRNKMEYTFGKDKEG 138

Query: 58  LYHIMFDQQTK--ERMRIDYFMPGSL------------LINALMIEMMATIRLEPLLRAK 103
              +   ++ +  E +  D                    IN  +         E  LR  
Sbjct: 139 NAALGLHRKGRFYEVIMTDKCNIVDGDFIKALTLTFEYAINKRLP-FYDKKTHEGFLRHL 197

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR------LRDALHARKYQIQLIGRANK 157
           + +    + +    IVT    +       E          L   LH +           +
Sbjct: 198 VVRKASKSREILLNIVTTTQLKHDFTELIEIYKNANFGSHLVGVLHTQNDSWSDAVVCER 257

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
            ++   RDY+ E +      L ++    SF Q N+     + E V      +    + +L
Sbjct: 258 LEVLYGRDYLIEEIL----DLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDL 313

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G   +++A    +V+ +E+ + +V +AR N   N + N   +       +Q ++  
Sbjct: 314 YSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLKNCTFIAGD---VSQKLKEI 370

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSI 334
           +E            +   + VDPPRSG++   +  +V+  P  ++Y+SCNP+SL RDL +
Sbjct: 371 KE------------QPDVVIVDPPRSGINPKALEDIVKFNPQKVVYVSCNPESLARDLKV 418

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365
            S   + ++++   D FPYT H+E  VL+ RK
Sbjct: 419 FSEGGYKVDKVKCVDMFPYTYHVETVVLMERK 450


>gi|237733145|ref|ZP_04563626.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383827|gb|EEO33918.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 448

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 153/386 (39%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
              L     + Q+  K  R++  +          N  I   +P HYR + +  +   G+ 
Sbjct: 79  GCQLQHLNPQGQMIYKTKRVKDCLERIGNCKVAVNDCIMMEKPWHYRNKVQMPVGVKGNH 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLR-AKLFQIDYLTSQ 113
           L    + Q++ E +  +     + L N +     E+M   ++ P  + A    I ++ ++
Sbjct: 139 LVTGFYKQKSNEIIPCENCYIQNELSNQITNRVKELMEEFKIYPYDKLAHQGNIKHILTK 198

Query: 114 ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
               +D+ ++ LI +R       +    +       K  IQ I           +  I  
Sbjct: 199 HGYHTDEVMLVLISYRNKIKDMDKLVEIITKEFPMIKTVIQNINHRTDNVILGEQEVILF 258

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
              Y+ + L        Y+    SF Q N      +    +      + D +L+ YCG G
Sbjct: 259 GNGYIYDTLLGN----KYKISLKSFYQVNPIQVEKLYSKAIEFAGLSKEDIVLDAYCGIG 314

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L +A++  +V  VEI + +++ A+ N   N+++N +     + ++   +  + +   
Sbjct: 315 TITLSVAKYVKKVYGVEIVETAIDDAKNNAVLNNISNAEFKCSDAGKYMLELVNQDQ--- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-T 338
                        +FVDPPR G     +  ++QA P  I+YISC+  +  RD+  L    
Sbjct: 372 ---------HLDVVFVDPPRKGCSTEFLDNLIQAEPKKIIYISCDVATQARDIKYLQEFG 422

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +  +     D FP+T H+E  V L +
Sbjct: 423 YHADVCQPVDMFPHTTHIENIVRLSK 448


>gi|229552631|ref|ZP_04441356.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|258540007|ref|YP_003174506.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|229314002|gb|EEN79975.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|257151683|emb|CAR90655.1| RNA methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 455

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 139/384 (36%), Gaps = 47/384 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D + Q +  F+    Q       I  + P HYR +A+F +      +   +
Sbjct: 91  YPAQLRFKRDVVAQALAKFKPLGWQHYDLKPTIGMTHPTHYRNKAQFPVREIDGHVRAGL 150

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + + +F+               L+  L I +    +   +++  + +  + T
Sbjct: 151 YAPGSHRLIPLTHFLTQAPLTMKVVKTLCQLLEDLQIPIYNEKKHAGIVKTLVVRESFST 210

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
               Q  VT I +        +    +   L       Q I           ++++   +
Sbjct: 211 G---QVQVTFITNSAKLPKQAQLITAIAAQLPMVVSIAQNINPSSTSLIWGKESRLLAGQ 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y+ E L+       ++    +F Q N      +      A +    D L++ YCG G  
Sbjct: 268 PYIQETLS----GRTFQLSPQAFLQLNPKQTEQLYAIAKDALQLAPDDTLIDAYCGIGTV 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA     +  ++    ++  A+ N   N  NN       ++       +E       
Sbjct: 324 GMSLANRHQSIYGMDTIPEAIADAKDNAKNNGFNNTHYFVGKAETLFPKWLKE------- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTI 341
                      + VDPPRSGL+   +  ++Q  P    YISCNP +L RDL  L+  + +
Sbjct: 377 -----GIHPNAVIVDPPRSGLERPFIDALLQLNPQKFAYISCNPSTLARDLVPLAKHYQV 431

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           + +   D FP T   E  V   R+
Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTRR 455


>gi|312873424|ref|ZP_07733475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091108|gb|EFQ49501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2052A-d]
          Length = 447

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 151/385 (39%), Gaps = 39/385 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             L   +YE+QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108
              F + + + + +  F+     I+A ++ +              I+    +R    +  
Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167
               Q    +V L       DA  +    L +        + L    +KT + L  ++Y+
Sbjct: 200 KANGQLMIVLVCLHKSFNNLDAVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254

Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
              +  +      L ++    SF Q N+     +    +   +    D+ ++ Y G G  
Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTADDVVIDAYSGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E       E       
Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL D  +      +   I+YISCNP ++ RDL I  +  + 
Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAGYD 422

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
            + +   D FP T H+E   LL RK
Sbjct: 423 FDCIDPVDMFPQTPHVETIALLTRK 447


>gi|169350959|ref|ZP_02867897.1| hypothetical protein CLOSPI_01736 [Clostridium spiroforme DSM 1552]
 gi|169292021|gb|EDS74154.1| hypothetical protein CLOSPI_01736 [Clostridium spiroforme DSM 1552]
          Length = 449

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 160/386 (41%), Gaps = 41/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L     E Q+  K  R++  +       +++       +P +YR + +  I   G+ 
Sbjct: 79  GCQLQHLNQEGQMLFKTKRVKDCLERIGNCFVEVNDCLMMEDPWYYRNKVQMPIGVKGNR 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPL--------LRAKLFQ 106
           L    + Q++ E +  D     + L N +     E+M   ++ P         ++  L +
Sbjct: 139 LVTGFYKQKSNEIIPCDECFIQNKLSNQITKRVKELMEKYKIYPYDKLSHQGNIKHILTK 198

Query: 107 IDYLTSQSDQAIVTLIYH-----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             Y +++    +++ +       +L+ +  +E ++ ++  +    ++I  +   +K  I 
Sbjct: 199 HGYHSNEIMLVLISYLDKINNVDKLVAEITKEFSM-IKTVIQNINHRIDNVILGDKEIIL 257

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
               ++ + L        Y+    SF Q N      + +  +   K    D+ L+ YCG 
Sbjct: 258 FGDGFIYDNLLDN----RYKISLKSFYQVNPIQVEKLYQKAIEFAKLSNDDVVLDAYCGI 313

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +L LA++  +V  VEI   ++  AR N   N + NV+     + ++           
Sbjct: 314 GTIALSLAKYVKKVYGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKY----------- 362

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST- 337
            + ++  ++     +FVDPPR G     +  ++QA P  I+YISC+  +  RD+  L   
Sbjct: 363 -MIELVNNNIHLDVVFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEF 421

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            + ++     D FP+T H+E  + L 
Sbjct: 422 NYQVDMCQPVDMFPHTTHIENIIRLE 447


>gi|322383954|ref|ZP_08057684.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321151431|gb|EFX44618.1| RNA methyltransferase-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 536

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 139/387 (35%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI------FRSEPIHYRMRAEFHIWHDG 55
              L    Y  QLA K + +R+    +   N  I          P  YR +A+       
Sbjct: 162 GCQLQHMTYSSQLAAKEEIVRESFRRYLGDNAGILIRPIRGMDHPWDYRNKAQLQTEVRD 221

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKL 104
             +   ++   T   + I   +    +IN            L I +    +   +LR  +
Sbjct: 222 SRVITGLYTPGTHHLVDISGCLVQDPVINHVMQVMKEIVSELDIPVYNEKKRSGVLRTIV 281

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            ++   T +    ++T    L  H  L  A  +    + +  H        +    +T  
Sbjct: 282 ARVARSTGKVQLTLITATPFLPKHEKLVSAVHQRMPEVAEIAHNVNPDDTPLVFGERTVH 341

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
               D ++E L      L +     +F Q N    VH+ ++V  A   + GD  +++ YC
Sbjct: 342 LSGEDRLEETLG----PLRFELSPRAFFQLNPSQTVHLYDYVKEA-AALTGDELVVDAYC 396

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +EI   +V+ AR N   + + N +     +++      RE  
Sbjct: 397 GTGTIGLWLAPLACEVRGIEIIDDAVQDARRNAERSGLGNARFYTGRAEKLLPQWVREGV 456

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS-ILST 337
              +  +D                        +    P ++Y+SCNP +L +D   +L  
Sbjct: 457 RPDVVVVDPPRTGCDA----------ALLRAILAAKPPRLVYVSCNPSTLAKDCRTLLGG 506

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            ++ E +   D FP T H+EC + + R
Sbjct: 507 GYSAEWVQPVDMFPQTAHVECVIRIQR 533


>gi|325977645|ref|YP_004287361.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|325177573|emb|CBZ47617.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 450

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 139/386 (36%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D + Q +  F+    +       +    P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLEFKDDLIAQSLKKFKPAGYENYDIRHTLGMEVPYHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
              +   +F++ +   + I   +    L  A++  +   +    +          +R  +
Sbjct: 141 KGSVKSGLFEEGSHHLVDIRDCLVQDELTQAIINRVTELLEKHHIPIYDERKIAGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    T+Q     +T   ++   +          ++                 KT++  
Sbjct: 201 IRKAIATNQVQLIFITSRDVFLAPIIKQLTAEFDMIKGIAVNVNRSKSSEIYGEKTEVIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
               + E +        +     +F Q N      +    +AA    + D +++ YCG G
Sbjct: 261 GNADISEEVL----DYQFSLSPRAFYQLNPQQTEVLYGQAVAALDVSENDHVIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A     V  ++I   ++  A+ N       N       +++      +E     
Sbjct: 317 TIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPKWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  LS  +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLNTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V LVRK
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLVRK 450


>gi|260495077|ref|ZP_05815206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_33]
 gi|260197520|gb|EEW95038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_33]
          Length = 457

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 161/384 (41%), Gaps = 34/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEP-IHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M        +   ++  SE   +YR +         +
Sbjct: 86  GCDFAMLKYESQLKYKKLMVEEVMRKIAGLSDIQVAEVLASEDIYNYRNKIIEPFSIYNN 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++ E+         ++  E   +  L  I  
Sbjct: 146 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNRNKISVYNEITHKGLLRNIMI 205

Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+V LI +   + +  ++   +LR+ +   K  I +   + KT   +      
Sbjct: 206 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENISEIK-SIYISLNSKKTNTVIGEKNIL 264

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y ++ +      + +     SF Q N      + +  ++    I    +++ Y G G  
Sbjct: 265 IYGEKSIKENINGIEFHISPTSFFQINVKQAKRLYDIAISFFDDIDNKYIVDAYSGTGTI 324

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++A+   +V A+EI K + E        N + N+K +  + ++             L 
Sbjct: 325 GMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIENIKFINGAVEK------------ELV 372

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
            +  ++ +  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 373 KLINNNQKIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 432

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +++L   D FP T H+EC  L+ +
Sbjct: 433 LKKLQAVDMFPQTSHIECVGLIEK 456


>gi|262282939|ref|ZP_06060706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           2_1_36FAA]
 gi|262261191|gb|EEY79890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           2_1_36FAA]
          Length = 480

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 150/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 112 YPEQLKFKTKQVKDSLYKIAGITDVEVAETLGMVNPVKYRNKAQVPVRRVNGVLETGFFR 171

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 172 KNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRGHYSGQ 231

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L D   +    +   +     Q        + +    +DY+ +
Sbjct: 232 IMVILVTTRPKVFRVEQLIDQVIKQFPEIVSVIQNINDQNTNAIFGKEWRTLYGQDYITD 291

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +        D++ + Y G G   L +A
Sbjct: 292 QMLGND----FQIAGPAFYQVNTQMAEKLYQTAIDFAGLKVDDVVVDAYSGIGTIGLSVA 347

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N A N + N   V  +++   +   +E            
Sbjct: 348 KHVKEVYGVEVIPEAVENSKKNAAINGITNSHYVCDTAENAMKNWLKE------------ 395

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 396 GIQPSLILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 455

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LLVR
Sbjct: 456 PVDLFPQTHHVEAVSLLVR 474


>gi|327389388|gb|EGE87733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA04375]
          Length = 451

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/385 (18%), Positives = 155/385 (40%), Gaps = 40/385 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + + + M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHDLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        + +    +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ +++        ++    +F Q N  +   + +  +   +  + D+ ++ Y G G  
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTTIDFAELKEDDVVIDAYSGIGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H   V  VE+   +VE ++ N   NH++N   V  +++   +   +E       
Sbjct: 319 GLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNTHYVCDTAENAMKNWLKE------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + 
Sbjct: 372 -----GIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYQELGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++++   D FP T H+E   LLV++
Sbjct: 427 LKKVQPVDLFPQTHHVEAVSLLVKE 451


>gi|153931008|ref|YP_001385124.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 19397]
 gi|153937829|ref|YP_001388593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. Hall]
 gi|152927052|gb|ABS32552.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933743|gb|ABS39242.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A str. Hall]
          Length = 450

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 147/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55
             +     YE+QL  K ++L ++  + ++            E   YR + EF       G
Sbjct: 79  GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 138

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103
            DL   M  +      + +D                    N   +     +  E  LR  
Sbjct: 139 GDLTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT                  EC   ++  LH     +  + + +K
Sbjct: 199 VIRKAKNTGEILVNIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            +I   RDY+ E L      L ++    +F Q N+     +   V          ++ +L
Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A    +V+ VE+ + +V+AA  N   N +NN + +     +  + +++ 
Sbjct: 315 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 373

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +E++   D FP+T H+E  V L +
Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450


>gi|306830729|ref|ZP_07463893.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|304427076|gb|EFM30184.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
          Length = 450

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 139/386 (36%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D + Q +  F+    +       +    P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLEFKDDLIAQSLKKFKPAGYENYDIRHTLGMEVPYHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
              +   +F++ +   + I   +    L  A++  +   +    +          +R  +
Sbjct: 141 KGSVKAGLFEEGSHRLVDIRDCLVQDELTQAIINRVTELLEKHHIPIYDERKIAGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    T+Q     +T   ++   +          ++                 KT++  
Sbjct: 201 IRKAIATNQVQLIFITSRDVFLAPVIKQLTAEFDMIKGIAVNVNRSKSSEIYGEKTEVIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
               + E +        +     +F Q N      +    +AA    + D +++ YCG G
Sbjct: 261 GNADISEEVL----DYQFSLSPRAFYQLNPQQTEVLYGQAVAALDVSENDHVIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A     V  ++I   ++  A+ N       N       +++      +E     
Sbjct: 317 TIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPKWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  LS  +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLNTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V LVRK
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLVRK 450


>gi|309804713|ref|ZP_07698778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 09V1-c]
 gi|309808903|ref|ZP_07702784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 01V1-a]
 gi|325911406|ref|ZP_08173818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 143-D]
 gi|308166105|gb|EFO68323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308167901|gb|EFO70038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 01V1-a]
 gi|325476756|gb|EGC79910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 143-D]
          Length = 449

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 152/384 (39%), Gaps = 39/384 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             L   +YE+QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108
              F + + + + +  F+     I+A ++ +              I+    +R    +  
Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167
               Q    +V L       DA  +    L +        + L    +KT + L  ++Y+
Sbjct: 200 KANGQLMIVLVCLHKSFKNLDAVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254

Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
              +  +      L ++    SF Q N+     +    +   +    D+ ++ Y G G  
Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTSDDVVIDAYSGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E       E       
Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL D  +      +   I+YISCNP ++ RDL I  +  + 
Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAGYD 422

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
            + +   D FP T H+EC VLL +
Sbjct: 423 FDCIDPVDMFPQTPHVECVVLLTK 446


>gi|309809377|ref|ZP_07703239.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308170288|gb|EFO72319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 449

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 152/384 (39%), Gaps = 39/384 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             L   +YE+QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108
              F + + + + +  F+     I+A ++ +              I+    +R    +  
Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167
               Q    +V L       DA  +    L +        + L    +KT + L  ++Y+
Sbjct: 200 KANGQLMIVLVCLHKSFKNLDAVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254

Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
              +  +      L ++    SF Q N+     +    +   +    D+ ++ Y G G  
Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTSDDVVIDAYSGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E       E       
Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL D  +      +   I+YISCNP ++ RDL I  +  + 
Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAGYD 422

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
            + +   D FP T H+EC VLL +
Sbjct: 423 FDCIDPVDMFPQTPHVECVVLLTK 446


>gi|306830030|ref|ZP_07463216.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
 gi|304427743|gb|EFM30837.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
          Length = 453

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 150/389 (38%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I  SEP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMSEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 NNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRIAELLTYHQIPITDERKTLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L  ++L+ D  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLNQLVQDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSEEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKKMGFDNTHYEAGTAEEIIPRWYQE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLARDLVKLVKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           + +  +   D FP+T   E  V LV++ S
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLVKRKS 452


>gi|322387316|ref|ZP_08060926.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
           700779]
 gi|321141845|gb|EFX37340.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus infantis ATCC
           700779]
          Length = 455

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 145/389 (37%), Gaps = 40/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
              +   ++ Q +   + +   +       A+   +   +    +          +R  +
Sbjct: 141 KGQVKAGLYAQNSHYLVELKDCLVQDKETQAIANRIAELLTYHQIPITDDRKILGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   + + D  ++    +  A++    +   I   +KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQFVKDLVKDYPEVVTVAVNTNTAKTSEI-YGDKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             +D + E +        +     +F Q N      +  E V A        L++ YCG 
Sbjct: 260 WGQDSIREGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVNENDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N       N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKENAKRMGYTNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +   A   ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTIVKYAPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           + +  +   D FP+T   E  V L ++ S
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLTKRKS 452


>gi|270290024|ref|ZP_06196250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
           acidilactici 7_4]
 gi|270281561|gb|EFA27393.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
           acidilactici 7_4]
          Length = 490

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 141/384 (36%), Gaps = 42/384 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLY-HI 61
           Y  QL  K D +RQ +  F+    Q       I   +P+ YR +A+F I    D      
Sbjct: 123 YPAQLEFKRDVIRQALTKFRPAGYQDYELRPTIGMDDPVAYRNKAQFQIRRLADGRIGAG 182

Query: 62  MFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYL 110
           ++ + T E + +        L   +            +++      E  L+  + ++   
Sbjct: 183 LYKEGTHELVDLATCSVQHPLTMKIIRAAVALFTKYDVDIYDEHHNEGELKTLVVRVAQA 242

Query: 111 TSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           T ++    +T    L +   + D        +   +       Q +   ++T     +D 
Sbjct: 243 TQETQVVFITNTPQLSHATEIIDELSTQFPEIVSFMQNINPGRQSLIWGDQTVKLRGQDT 302

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225
           + E L      L +     +F Q N    V + +    A +      +++ Y G G   L
Sbjct: 303 IREEL----DGLSFNLSARAFFQLNPQQTVTLYDEARKALSITPNSRIVDAYSGVGTIGL 358

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     +  ++    ++  A  N   N + N +    S+++      +E         
Sbjct: 359 SLASEAKEIRGMDTIADAITDANENARLNSITNARYEVGSAEKLLPKWLKE--------- 409

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIER 343
               ++   I VDPPR GLD   +  +   A  H  Y+SCNP +L RDL  L   + +E 
Sbjct: 410 ---GFQPDGIVVDPPRVGLDRRLIDAILKSAPKHFAYVSCNPSTLARDLVPLVKKYRVEY 466

Query: 344 LALFDQFPYTRHMECGVLLVRKPS 367
           +   D FP T  +E  V L  + +
Sbjct: 467 IQSIDMFPQTARVEAVVKLTLRNA 490


>gi|315611699|ref|ZP_07886621.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315316114|gb|EFU64144.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 453

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 151/387 (39%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLRQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   +++Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYEQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKTLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L  ++L+ D  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLNQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAQKMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLARDLVKLVKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP+T   E  V LV+K
Sbjct: 424 YDLQYIQSVDMFPHTARTEAVVKLVKK 450


>gi|226950293|ref|YP_002805384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A2 str. Kyoto]
 gi|226843642|gb|ACO86308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A2 str. Kyoto]
          Length = 450

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 147/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55
             +     YE+QL  K ++L ++  + ++            E   YR + EF       G
Sbjct: 79  GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 138

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103
            DL   M  +      + +D                    N   +     +  E  LR  
Sbjct: 139 GDLTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT                  EC   ++  LH     +  + + +K
Sbjct: 199 VIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LEL 216
            +I   RDY+ E L      L ++    +F Q N+     +   V          + L+L
Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVLDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A    +V+ VE+ + +V+AA  N   N +NN + +     +  + +++ 
Sbjct: 315 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 373

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +E++   D FP+T H+E  V L +
Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450


>gi|167760470|ref|ZP_02432597.1| hypothetical protein CLOSCI_02844 [Clostridium scindens ATCC 35704]
 gi|167661836|gb|EDS05966.1| hypothetical protein CLOSCI_02844 [Clostridium scindens ATCC 35704]
          Length = 460

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 148/395 (37%), Gaps = 51/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEP--IHYRMRAEFHIW--HDG 55
             T     YE+QL  K  +++ MM      +   +     P    YR + EF     +  
Sbjct: 81  GCTYQNLPYEEQLKMKEAQVKAMMDEAVEGDYCWEGIMPSPVKEAYRNKMEFSFGDEYKD 140

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103
             L   M  + +  + + +            +            +     +R     R  
Sbjct: 141 GPLALGMHKRGSFHDIVNVMECRIVDEDYRKILACTLGFARETGLPYYHRMRHIGYFRHL 200

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----------RLRDALHARKYQIQLIG 153
           L +    T +    IVT   H  +++A     +          ++   LH +   +  + 
Sbjct: 201 LVRKAVKTGEILIDIVTTTEHNFIEEAGGNQWVSQLLSLELDGKIAGILHTKNDSLADVV 260

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
           + + T+I   +D+  E L      L ++    SF Q N+     + E         +  +
Sbjct: 261 KDDGTEILYGQDFFYEELL----GLKFKITPFSFFQTNSLGAEVLYEKTREYIGETKDKV 316

Query: 214 L-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L +LY G G  + ++A    +V+ VEI + +VEAAR N A N ++N              
Sbjct: 317 LFDLYSGTGTIAQIVAPVAKKVVGVEIVEEAVEAARENAALNGLDNCTFWAGDV------ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                    LK ID        I +DPPR G+    +  +       ++YI+C P SL R
Sbjct: 371 ---------LKVIDELGEVPDVIILDPPRDGVHPKALEKITNFGVERMVYIACKPTSLAR 421

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL +L    + +ER+   D FP T H+E  VL+ R
Sbjct: 422 DLEMLQGRGYRVERMGCVDLFPGTVHVETVVLMSR 456


>gi|160933690|ref|ZP_02081078.1| hypothetical protein CLOLEP_02551 [Clostridium leptum DSM 753]
 gi|156867567|gb|EDO60939.1| hypothetical protein CLOLEP_02551 [Clostridium leptum DSM 753]
          Length = 460

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 143/385 (37%), Gaps = 35/385 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             +     Y+ +L  K  R+   +              +  ++   YR +A+  I  D D
Sbjct: 82  GCSFRHISYKAELEAKRRRVEDAIQRIGGFDRFPVPPVVGAAKINRYRNKAQLPIGADRD 141

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSLL-------INALMIEMMATIRLEPLLRAKLFQID 108
                  +   +   + I+       +       +   M E    +  E      L  + 
Sbjct: 142 GRGIMGFYALHSHRIVPIEDCPLQPKMFAQAVASVKQWMEEYKVPVYHEESHSGLLRHLY 201

Query: 109 YL-TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-- 165
               S +   +V L+ +        E   RLR+ L   +  +    R  KT + L +   
Sbjct: 202 LREASATGALMVCLVGNGDELPHSGELVKRLREDLPCLESVVFNSNR-EKTNVILGKRCQ 260

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
             +  + +      L +     SF Q N      +           + D +L+LYCG G 
Sbjct: 261 ALWGKDGIVDHLCGLSFFLSPLSFYQVNRDQAEILYRLAGEYASLQKEDTVLDLYCGTGT 320

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             + +A    +V+ VE+   ++E A+ N   N V N++ +   S +  Q +R+  E    
Sbjct: 321 IGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDSAQAVQMLRKRGE---- 376

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
                   R   + VDPPR G     +  +   A   I+Y+SC+P +L RDL +L    +
Sbjct: 377 --------RPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLARDLKLLVKAGY 428

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            ++ LA  D FP T H+E   LL +
Sbjct: 429 CLQTLAPVDLFPRTAHVETVALLEK 453


>gi|28211569|ref|NP_782513.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
 gi|50401760|sp|Q892Z2|Y1941_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_01941
 gi|28204010|gb|AAO36450.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
          Length = 456

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 152/396 (38%), Gaps = 50/396 (12%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAEFHIW--H 53
            G    D  YE+QL  K   + ++        F    ++    +   YR + EF      
Sbjct: 80  GGCAHQDIPYEKQLEIKQHEILELFKKANLDGFDFLPIE-GSPKQYEYRNKMEFTFGDLK 138

Query: 54  DGDDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL-- 110
            G +L   M  +  +   +  D           ++   +   R + L   ++   +    
Sbjct: 139 KGGELNLGMHAKGMSFGIISADECKIVDEDYRNILNATLNYFREKQLPHYRIMAREGYLR 198

Query: 111 ------TSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGRA 155
                    + + +V L+    +D    E             L   LH     +  + + 
Sbjct: 199 NLVIRKAENTGEVLVNLVTTSQIDFNLDEYTEIIKSINYKGNLVGILHTINDSLSDVVQC 258

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214
           +K  I   RDY+ E L      L ++    SF Q N+     +   V       +   + 
Sbjct: 259 DKLNILYGRDYIIEDLL----GLKFKITPLSFFQTNSKGAEKLYSIVRDFIGESKSKTVF 314

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G    ++A    +V+ +E+ + +VE+AR N   N++NN + +     +  + ++
Sbjct: 315 DLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFIAGDIAQVIKEVK 374

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332
           +               +   I +DPPR G+    +  V  +  P I+Y+SCNP +L  DL
Sbjct: 375 Q---------------KPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDL 419

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +L    + IE++   D FP T H+E  V L RK +
Sbjct: 420 KVLVENGYVIEKVKGMDMFPSTPHVETVVGLRRKDT 455


>gi|320527423|ref|ZP_08028604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
 gi|320132136|gb|EFW24685.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
          Length = 377

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 87/382 (22%), Positives = 151/382 (39%), Gaps = 36/382 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDL 58
            G   ID  YE+QL  K + +R++    +     +   +P HYR +  A F      + +
Sbjct: 11  GGCAYIDVPYEEQLKMKREEMRKIFRT-KAIEPVLGMKDPYHYRHKIYASFARDKKTNRI 69

Query: 59  YHIMFDQQTKERMRIDYFMPGSLL-------INALMIEMMATIRLEPLLRAKLFQIDYLT 111
           Y  M+++ +  ++  +  +    L       I  L   M   I  E   R  L       
Sbjct: 70  YAGMYEENSHRKVPSEMCLIQHTLANEILTTICKLAESMRIEIYDEDSGRGTLRHAYIRI 129

Query: 112 SQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----Y 166
           S+ ++  ++ ++       + +     L       K  I    RA+ T + L +D    Y
Sbjct: 130 SKATNDVLLDIVIGSKGLPSSKNFVNALVKKFPQIKTIILNFNRAH-TSMILGKDERVLY 188

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
               +T     L +R    SF Q N      +    L+  K    D+ L+  CG G  SL
Sbjct: 189 GPGYITDRIGGLEFRISSKSFYQVNPEQTEVLYRTALSLVKIKDTDVVLDACCGIGTISL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           + A+    V+ VEI   ++  A+ N   N + N +     + EF Q M            
Sbjct: 249 LAAQSAKHVIGVEINPQAIRDAKNNAKHNKLLNTEFYAADATEFIQRMN----------- 297

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIE 342
                +   + +DPPRSG+    +  +   +   ++YISCNP +   D+  L    + I+
Sbjct: 298 ----IKTDVVILDPPRSGMTLPFMHKLAQLSPDRVVYISCNPYTQVTDIEPLKKAGYQIK 353

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           ++   D F +T H+E  VLL +
Sbjct: 354 KIVPVDLFGFTPHVETMVLLSK 375


>gi|146318257|ref|YP_001197969.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           05ZYH33]
 gi|146320451|ref|YP_001200162.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           98HAH33]
 gi|253751426|ref|YP_003024567.1| RNA methyltransferase [Streptococcus suis SC84]
 gi|253753327|ref|YP_003026468.1| RNA methyltransferase [Streptococcus suis P1/7]
 gi|253755843|ref|YP_003028983.1| RNA methyltransferase [Streptococcus suis BM407]
 gi|145689063|gb|ABP89569.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           05ZYH33]
 gi|145691257|gb|ABP91762.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Streptococcus suis
           98HAH33]
 gi|251815715|emb|CAZ51315.1| putative RNA methyltransferase [Streptococcus suis SC84]
 gi|251818307|emb|CAZ56118.1| putative RNA methyltransferase [Streptococcus suis BM407]
 gi|251819573|emb|CAR45243.1| putative RNA methyltransferase [Streptococcus suis P1/7]
 gi|292558055|gb|ADE31056.1| tRNA (uracil-5-)-methyltransferase/TrmA [Streptococcus suis GZ1]
          Length = 452

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 146/381 (38%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QLA K  ++   +              +    P+ YR +A   +      L    F 
Sbjct: 88  YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDSPLAYRNKAAVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + + I+ F      I+AL++   +++  + L+P        L+R  + +  + + Q
Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169
               +VT    R           RL          +Q I   N T     +++      E
Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFRLLHGSE 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +        +     SF Q N  +   + +  +   +    D+ ++ Y G G   L  A
Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  ++ N A N ++NV  V  S++   Q    +            
Sbjct: 324 KQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   IFVDPPR GL ++ +    +     I+YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D FP T H+E   LL ++ 
Sbjct: 432 PADLFPNTHHIEVVGLLEKRN 452


>gi|288905623|ref|YP_003430845.1| RNA methyltransferase [Streptococcus gallolyticus UCN34]
 gi|288732349|emb|CBI13921.1| putative RNA methyltransferase [Streptococcus gallolyticus UCN34]
          Length = 456

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 149/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  ++   +     + ++++      + P  YR +A+  +      L    F 
Sbjct: 88  YAEQLKFKRKQVMDNLYKTAGISDVEVAETLGMAHPYAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + M I  +   +  I+ L     +++    L+P        L+R  + +  + +  
Sbjct: 148 KHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKGQTGLIRNLVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++  +  R       +   ++       K  +Q I   N T      +    Y  +
Sbjct: 207 --EMMLVFVTTRPKIFRIEQIIEKIVVEFPTVKSIVQNINDKN-TNAIFGNEFKTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +  +     Y     SF Q N  +   + +  +  +     D +++ Y G G   L  A
Sbjct: 264 TIVDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           ++   V  VE+ + +VE A+ N A N + N   V  S++       ++            
Sbjct: 324 KNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL +  +   V   P  I YISCNP ++ RD+ +     + ++++ 
Sbjct: 372 GIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPATMARDIKLYQELGYKLQKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LLVR
Sbjct: 432 PVDLFPNTHHVEAVSLLVR 450


>gi|199597997|ref|ZP_03211421.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           rhamnosus HN001]
 gi|199591087|gb|EDY99169.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           rhamnosus HN001]
          Length = 455

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 140/384 (36%), Gaps = 47/384 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D + Q +  F+    Q       I  + P HYR +A+F +      +   +
Sbjct: 91  YPAQLRFKRDVVAQALAKFKPLGWQHYDLKPTIGMTHPTHYRNKAQFPVREINGHVRAGL 150

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + + +F+               L+  L I +    +   +++  + +  +  
Sbjct: 151 YAPGSHRLIPLTHFLTQAPLTMKVVTTLCQLLEDLQIPIYNEKKHAGIVKTLVVRESF-- 208

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
             + Q  VT I +        +    +   L       Q I           ++++   +
Sbjct: 209 -SAGQVQVTFITNSAKLPKQAQLITAIAAQLPMVVSIAQNINLGNTSLIWGKESRLLAGQ 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y+ E L+       ++    +F Q N      +      A +    D L++ YCG G  
Sbjct: 268 PYIQETLS----GRTFQLSPQAFLQLNPKQTEQLYAIAKDALQLAPDDTLIDAYCGIGTV 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA     +  ++    ++  A+ N   N  NN +     ++       +E       
Sbjct: 324 GMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTRYFVGKAETLFPKWLKE------- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTI 341
                      + VDPPRSGL+   +  ++Q  P    YISCNP +L RDL  L+  + +
Sbjct: 377 -----GIHPNAVIVDPPRSGLERPFIDALLQLSPQKFAYISCNPSTLARDLVPLAKHYQV 431

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           + +   D FP T   E  V   R+
Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTRR 455


>gi|310779073|ref|YP_003967406.1| 23S rRNA m(5)U-1939 methyltransferase [Ilyobacter polytropus DSM
           2926]
 gi|309748396|gb|ADO83058.1| 23S rRNA m(5)U-1939 methyltransferase [Ilyobacter polytropus DSM
           2926]
          Length = 453

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 148/383 (38%), Gaps = 31/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K + +  ++              I  + P +YR +      +   
Sbjct: 82  GCDFGMLKYESQLKYKKEMVEDVLKKIGKLENFEIYDTIGSTSPKYYRNKVIEPFAYKDG 141

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDY 109
            +    F +++ E   +   M  S L N +  E+          +  E   R  L  +  
Sbjct: 142 KIISGFFKKKSHEVFEVSENMLQSKLANRITKELKEILNKKRIPVYDEKKHRGILRHVMV 201

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---Y 166
            T+  D+A+V L+         ++    LRD     K     +          D D   Y
Sbjct: 202 RTNSFDEAMVVLVVKGEPAKNLKKILYDLRDRCPEVKAAYISVNNKRTNVALGDEDIYVY 261

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
            DE L      + +     SF Q N      + E  ++    ++  ++++ Y G G  ++
Sbjct: 262 GDEVLKEELFDIKFNISPKSFFQINLEQTKKLYETAISYFDDVKNKNIVDAYSGTGTIAM 321

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           +L+R   +V A+E+ K +   A+     N + N+  +    +             +L+++
Sbjct: 322 ILSRWAKKVFAIEMVKSATLDAKKTSMENKIKNIDFINGKVE------------GKLEEL 369

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIE 342
                +   I  DPPR G++++ +  V       I+YISCNP +  RD ++L+   + + 
Sbjct: 370 LKKREKIDAIIFDPPRKGIEESVLHSVAKTGINEIVYISCNPSTFARDANVLNEIGYDLL 429

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           ++   D FP T H+E     V++
Sbjct: 430 KVQPVDMFPQTSHIEVVGKFVKR 452


>gi|194467488|ref|ZP_03073475.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
 gi|194454524|gb|EDX43421.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
          Length = 467

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 133/388 (34%), Gaps = 47/388 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y+QQL  K   +   +  FQ            I   E   YR +A+F +      +   +
Sbjct: 99  YQQQLKFKRQVIIDSLEKFQPYGYRNYNVRPTIAAPEEYGYRNKAQFQVRMVNGKVAAGL 158

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + ++                + +I  L I +        +++    Q  + T
Sbjct: 159 YQPNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKHNSGIIKTLAVQESWST 218

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
               +  +T I +       RE   R+   L A    +Q +           K      +
Sbjct: 219 G---EVQLTFITNSAKLPHKRELLERIEKELPAVVSVMQNVNPGDTPLVWGEKMIHLAGK 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNF 223
           D + E L      L ++    SF Q N      + E    A        L++ Y G G  
Sbjct: 276 DSILESLM----GLDFKLSARSFLQLNPEQTEVLYEEASKALELDKDDTLIDAYAGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +EI   +V  A  N   N++ N K     ++E     ++E       
Sbjct: 332 GLSLASRVKAVRGMEIIPEAVADANENAKLNNIANAKYEVGKAEEVLPRWQKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTI 341
                   F  + VDPPR+GLDD  +  +         Y+SC   SL R+L  L++ + +
Sbjct: 385 -----GLNFDALVVDPPRTGLDDQLIKQILKVKPRKFAYVSCGMASLARNLRRLTSVYHV 439

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSGW 369
           + +   D  P T   E  V L  +    
Sbjct: 440 DYIQPIDMMPQTARCEAVVKLSLRNGNK 467


>gi|148543331|ref|YP_001270701.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
 gi|184152739|ref|YP_001841080.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227364399|ref|ZP_03848491.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325683598|ref|ZP_08163114.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           MM4-1A]
 gi|148530365|gb|ABQ82364.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus reuteri DSM
           20016]
 gi|183224083|dbj|BAG24600.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
 gi|227070585|gb|EEI08916.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324977948|gb|EGC14899.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           MM4-1A]
          Length = 468

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 137/388 (35%), Gaps = 47/388 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y+QQL  K   +   +  FQ            I   E   YR +A+F +      +   +
Sbjct: 99  YQQQLKFKRQVIIDSLEKFQPYGYRNYDVRPTIAAPEEYGYRNKAQFQVRMVNGKVAAGL 158

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + ++                + +I  L I +        +++    +  + T
Sbjct: 159 YQPNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKHNSGIVKTLAVRESWST 218

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
               +  +T I +       RE   R+   L A    +Q +          +K      +
Sbjct: 219 G---EVQLTFITNSAKLPHKRELLERIEKELPAVVSVMQNVNPGDTPLVWGDKMIHLAGK 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D + E L      L ++    SF Q N      + E    A +  Q D L++ Y G G  
Sbjct: 276 DSILESLM----GLDFKLSARSFLQLNPEQTEVLYEEASKALELDQDDTLIDAYAGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +EI   +V  A  N   N++ N K     ++E     ++E       
Sbjct: 332 GLSLASRVKAVRGMEIIPEAVADANENAKLNNITNAKYEVGKAEEVLPRWQKE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTI 341
                   F  + VDPPR+GLDD  +  +         Y+SC   SL R+L  L++ + +
Sbjct: 385 -----GLNFDALVVDPPRTGLDDQLIKQILKVKPRKFAYVSCGMASLARNLRRLTSVYHV 439

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSGW 369
           + +   D  P T   E  V L  +    
Sbjct: 440 DYIQPIDMMPQTARCEAVVKLSLRNGNK 467


>gi|148264841|ref|YP_001231547.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146398341|gb|ABQ26974.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 470

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 150/389 (38%), Gaps = 38/389 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGD 56
              L+   Y  QL  K   + + +  ++     +        + ++YR  A+  I     
Sbjct: 97  GCPLIQMNYPAQLTWKKQLVGKFVRRYKTLEKAVLHDVIESPQQLNYRNSAKLVITGKFA 156

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105
           +    ++ + + + + I        LIN ++  + A I+              LLR  + 
Sbjct: 157 EPIIGIYRRNSHDVLDIGDCPLHHPLINKIITAVKAGIKKGKVPIYNPKSEMGLLRYLVI 216

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           ++   +  +++A+V  +      +     A  L+ A+       Q I  ++   I   +D
Sbjct: 217 RV---SETANRAMVVFVTSERSYNEIHHLAKHLQAAVPEVTVIDQNINGSSGNVIFGQKD 273

Query: 166 YV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
           +    +  L  A     +     SF Q N+G    + E V         + +L+LYCG G
Sbjct: 274 HFVTKEHVLPAAIGGTRFHISPRSFFQVNSGAARIIYEKVREWGALTGKERVLDLYCGIG 333

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA     VL +E+ + +V  A  N   N++ N +            +R E E   
Sbjct: 334 GISLFLAGKAREVLGIEVVEAAVADAEMNAQLNNIRNCRFKAGDVARLLGELREEGE--- 390

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST-T 338
                    +   + ++PPR G D+  +          I+Y+SC+P +L  DL IL+   
Sbjct: 391 ---------KVDLVILNPPRKGCDEQVLRETAAIGPQKIIYVSCSPQTLSHDLDILAALG 441

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +    +   D FP T H+E   LLV+  S
Sbjct: 442 YRTTEIQPVDMFPQTPHVEDVALLVKMKS 470


>gi|168179294|ref|ZP_02613958.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
 gi|182669610|gb|EDT81586.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
          Length = 450

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 147/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55
             +     YE+QL  K ++L ++  + ++            E   YR + EF       G
Sbjct: 79  GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 138

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103
            DL   M  +      + +D                    N   +     +  E  LR  
Sbjct: 139 GDLTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT                  EC   ++  LH     +  + + +K
Sbjct: 199 VIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKGECKGEIKGILHTINDTLSDVVQVDK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            +I   RDY+ E L      L ++    +F Q N+     +   V          ++ +L
Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A    +V+ VE+ + +V+AA  N   N +NN + +     +  + +++ 
Sbjct: 315 YCGTGTIGQIVAPRAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 373

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +E++   D FP+T H+E  V L +
Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHVETVVKLSK 450


>gi|304385720|ref|ZP_07368064.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
           DSM 20284]
 gi|304328224|gb|EFL95446.1| 23S rRNA (uracil-5-)-methyltransferase [Pediococcus acidilactici
           DSM 20284]
          Length = 490

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 141/384 (36%), Gaps = 42/384 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLY-HI 61
           Y  QL  K D +RQ +  F+    Q       I   +P+ YR +A+F I    D      
Sbjct: 123 YPAQLEFKRDVIRQALTKFRPAGYQDYELRPTIGMDDPVAYRNKAQFQIRRLADGRIGAG 182

Query: 62  MFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYL 110
           ++ + T E + +        L   +            +++      E  L+  + ++   
Sbjct: 183 LYKEGTHELVDLATCSVQHPLTMKIIRAAVALFTKYDVDIYDEHHNEGELKTLVVRVAQA 242

Query: 111 TSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           T ++    +T    L +   + D        +   +       Q +   ++T     +D 
Sbjct: 243 TQETQVVFITNTTQLSHATEIIDELSTQFPEIVSFMQNINPGRQSLIWGDQTVKLRGQDT 302

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225
           + E L      L +     +F Q N    V + +    A +      +++ Y G G   L
Sbjct: 303 IREEL----DGLSFNLSARAFFQLNPQQTVTLYDEARKALSITPNSRIVDAYSGVGTIGL 358

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     +  ++    ++  A  N   N + N +    S+++      +E         
Sbjct: 359 SLASEAKEIRGMDTIADAITDANENARLNSITNTRYEVGSAEKLLPKWLKE--------- 409

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIER 343
               ++   I VDPPR GLD   +  +   A  H  Y+SCNP +L RDL  L   + +E 
Sbjct: 410 ---GFQPDGIVVDPPRVGLDRRLIDAILKSAPKHFAYVSCNPSTLARDLVPLVKKYRVEY 466

Query: 344 LALFDQFPYTRHMECGVLLVRKPS 367
           +   D FP T  +E  V L  + +
Sbjct: 467 IQSIDMFPQTARVEAVVKLTLRNA 490


>gi|227543796|ref|ZP_03973845.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300908864|ref|ZP_07126327.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           SD2112]
 gi|227186223|gb|EEI66294.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300894271|gb|EFK87629.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
           SD2112]
          Length = 468

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 133/388 (34%), Gaps = 47/388 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y+QQL  K   +   +  FQ            I   E   YR +A+F I      +   +
Sbjct: 99  YQQQLKFKRQVIIDSLEKFQPYGYRNYDVRPTIAAPEEYGYRNKAQFQIRMVNGKVAAGL 158

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + ++                + +I  L I +        +++    +  + T
Sbjct: 159 YQPNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKNNSGIIKTLAVRESWST 218

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
               +  +T I +       RE   R+   L A    +Q +          +K      +
Sbjct: 219 G---EVQLTFITNSAKLPHKRELLERIEKELPAVVSVMQNVNPGDTPLIWGDKMIHLAGK 275

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNF 223
           D + E L      L ++    SF Q N      + E    A        L++ Y G G  
Sbjct: 276 DSILESLM----GLDFKLSARSFLQLNPEQTEVLYEEASKALELDKDDTLIDAYAGIGTI 331

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +EI   +V  A  N   N++ N K     ++E     + E       
Sbjct: 332 GLSLASRVKSVCGMEIIPEAVADANENAKLNNITNAKYEVGKAEEVLPRWQEE------- 384

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTI 341
                   F  + VDPPR+GLDD  +  +         Y+SC   SL R+L  L++ + +
Sbjct: 385 -----GLNFDALVVDPPRTGLDDQLIKQILKVKPRKFAYVSCGMASLARNLRRLTSVYHV 439

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSGW 369
           + +   D  P T   E  V L  +    
Sbjct: 440 DYIQPIDMMPQTARCEAVVKLSLRNGNK 467


>gi|170017687|ref|YP_001728606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum
           KM20]
 gi|169804544|gb|ACA83162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leuconostoc citreum
           KM20]
          Length = 473

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 143/379 (37%), Gaps = 39/379 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +YE QL  K  ++ Q+     V    N  I  ++P  YR +A+  +      L    + +
Sbjct: 111 KYEAQLTFKQRQVEQLFKKVNVSVEVNPTIGMTDPTKYRNKAQVPVQMVNGQLETGFYRR 170

Query: 66  QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            + + M ++ F      ++            L I        + ++R  + +  + + + 
Sbjct: 171 GSHKLMPVEDFYIQDPKVDEAVSVTRDVLRDLGISAYDEETHKGVVRHIMARRGFYSHEL 230

Query: 115 DQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
              I+T        D    A R     L+  +H        +      +     D + ++
Sbjct: 231 MVVIITNTKKLPEADNIAAALRAKLPELKSFIHNINNHDTNVIMGQWNETVWGADEIHDQ 290

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR 229
           L        +    NSF Q N      +             D++ + Y G G  +L +A 
Sbjct: 291 LMGKD----FIIGPNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSIAD 346

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V  VE+ + +V  A  N   NH++NV+ V   + E       +             
Sbjct: 347 QVAKVYGVEVVEDAVLDAEKNAQNNHIDNVEFVTADAPEQMTQWAAD------------G 394

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD-LSILSTTHTIER-LA 345
            +   +FVDPPR GL +  +  V A      +YISCNP +L RD + IL+    I+  + 
Sbjct: 395 LKPDVVFVDPPRKGLTNELISAVSAMQPKTFVYISCNPATLARDTVQILAEGFHIDGPIQ 454

Query: 346 LFDQFPYTRHMECGVLLVR 364
             DQFP T H+E  ++  R
Sbjct: 455 PIDQFPQTTHVESVLIFKR 473


>gi|78223178|ref|YP_384925.1| 23S rRNA methyltransferase/RumA [Geobacter metallireducens GS-15]
 gi|78194433|gb|ABB32200.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter metallireducens
           GS-15]
          Length = 493

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 138/384 (35%), Gaps = 38/384 (9%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSE-PIHYRMRAEFHIWHDGDD 57
             L+   Y  QL  K   + + + +F     VP   +  S  P+ YR  A+  +      
Sbjct: 95  CPLISMNYGAQLTLKRSLVEKEIRSFASLRAVPIDDVISSPRPLQYRNSAKLVVAGTFKS 154

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQ 106
               ++ + +   + I      + LIN +            + +        +LR  + +
Sbjct: 155 PIIGIYRRNSHNVVDISACPLHNPLINRVVAAAKEGIRKGKVPVYNPRTDTGILRYLVVR 214

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           +   T ++    VT    +   +     A  +R A+      +Q +  +    I    D+
Sbjct: 215 VSEHTGRAMAVFVTA---QRSYNEIHHLAKFVRQAVPELDVAVQNVNTSEGNVILAPHDH 271

Query: 167 V---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
               D  +      + +     SF Q N+G    + E V   +     + +++LYCG G 
Sbjct: 272 FLTKDHAIIEELAGIRFSISPRSFFQVNSGSARIIYEKVREWSALTGNEKVVDLYCGIGG 331

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA     V  +E    +V  A  N   N + N       +               L
Sbjct: 332 ISLFLAPGAQEVHGIEYVDAAVADAERNARLNGIRNCSFEAGDAA------------ELL 379

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-TH 339
           +++         +  +PPR G D   +          ++Y+SC+P +L RDL IL+   +
Sbjct: 380 EELVEEGTEPDVVIFNPPRKGCDRRVLEAAVNSGPGRMIYVSCSPATLARDLDILAGLGY 439

Query: 340 TIERLALFDQFPYTRHMECGVLLV 363
               +   D FP T H+E   LLV
Sbjct: 440 QTREIQPVDMFPQTPHIENVALLV 463


>gi|167756546|ref|ZP_02428673.1| hypothetical protein CLORAM_02083 [Clostridium ramosum DSM 1402]
 gi|167702721|gb|EDS17300.1| hypothetical protein CLORAM_02083 [Clostridium ramosum DSM 1402]
          Length = 448

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 153/386 (39%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
              L     + Q+  K  R++  +          N  I   +P HYR + +  +   G+ 
Sbjct: 79  GCQLQHLNPQGQMIYKTKRVKDCLERIGNCKVAVNDCIMMEKPWHYRNKVQMPVGVKGNH 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLR-AKLFQIDYLTSQ 113
           L    + Q++ E +  +     + L N +     E+M   ++ P  + A    I ++ ++
Sbjct: 139 LVTGFYKQKSNEIIPCENCYIQNELSNQITNRVKELMEEFKIYPYDKLAHQGNIKHILTK 198

Query: 114 ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICL 162
               +D+ ++ LI +R       +    +       K  IQ I           +  I  
Sbjct: 199 HGYHTDEVMLVLISYRNKIKDIDKLVEIITKEFPMIKTVIQNINHRTDNVILGEQEVILF 258

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
              Y+ + L        Y+    SF Q N      +    +      + D +L+ YCG G
Sbjct: 259 GNGYIYDTLLGN----KYKISLKSFYQVNPIQVEKLYSKAIEFAGLSKEDIVLDAYCGIG 314

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L +A++  +V  VEI + +++ A+ N   N+++N +     + ++   +  + +   
Sbjct: 315 TITLSVAKYVKKVYGVEIVETAIDDAKNNAVLNNISNAEFKCSDAGKYMLELVNQDQ--- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-T 338
                        +FVDPPR G     +  ++QA P  I+YISC+  +  RD+  L    
Sbjct: 372 ---------HLDVVFVDPPRKGCSTEFLDNLIQAEPKKIIYISCDVATQARDIKYLQEFG 422

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +  +     D FP+T H+E  V L +
Sbjct: 423 YHADVCQPVDMFPHTTHIENIVRLSK 448


>gi|19705034|ref|NP_602529.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|50401614|sp|Q8R5Z8|Y1713_FUSNN RecName: Full=Uncharacterized RNA methyltransferase FN1713
 gi|19712946|gb|AAL93828.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 464

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 162/385 (42%), Gaps = 34/385 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   + +++     + +++I       +  +YR +         +
Sbjct: 92  GCDFAMLKYESQLKYKRFMVEEVIRKIAGLSDIEISDVLASEDIYNYRNKIIEPFSVYAN 151

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++ E+   +    +        +  L  I  
Sbjct: 152 KIITGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHKGILRNIMI 211

Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+V LI +   + +  ++   +LR+ +   K  I +   + KT   +      
Sbjct: 212 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGEKNIL 270

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y ++ +      + +     SF Q N      + +  ++    I    +++ Y G G  
Sbjct: 271 IYGEKSIKENINRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSGTGTI 330

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++A+   +V A+EI K + E        N + N++ +  + ++             L 
Sbjct: 331 GMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEK------------ELV 378

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
            +  ++ +  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 379 KLVNNNQKIDTIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 438

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +++L   D FP T H+EC  L+ RK
Sbjct: 439 LKKLQAVDMFPQTSHIECVGLIERK 463


>gi|330832578|ref|YP_004401403.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3]
 gi|329306801|gb|AEB81217.1| RNA methyltransferase, TrmA family [Streptococcus suis ST3]
          Length = 452

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 145/381 (38%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QLA K  ++   +              +    P+ YR +A   +      L    F 
Sbjct: 88  YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDNPLAYRNKAAVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + +   I+ F      I+AL++   +++  + L+P        L+R  + +  + + Q
Sbjct: 148 KNSHDLFPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169
               +VT    R           RL          +Q I   N T     +++      E
Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFHLLHGSE 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +        +     SF Q N  +   + +  +   +    D+ ++ Y G G   L  A
Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  ++ N A N ++NV  V  S++   Q    +            
Sbjct: 324 KQVKHVYGVEVVEKAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   IFVDPPR GL ++ +    +     I+YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D FP T H+E   LL ++ 
Sbjct: 432 PTDLFPNTHHVEVVSLLEKRN 452


>gi|294784751|ref|ZP_06750039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_27]
 gi|294486465|gb|EFG33827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_27]
          Length = 463

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 163/385 (42%), Gaps = 34/385 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M     + ++Q+       +  +YR +         +
Sbjct: 92  GCDFAMLKYESQLKYKRLMVEEVMKKIAGLSDIQVNDVLASEDIYNYRNKIIEPFSVYAN 151

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++ E+   +    +        +  L  I  
Sbjct: 152 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYDENAHKGILRNIMI 211

Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+V LI +   + +  ++   +LR+ +   K    +   + KT   +      
Sbjct: 212 RTNSNNEAMVVLIINSNKITENIKKILFKLRENIKEIKST-YISLNSKKTNTVIGEKNIL 270

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y ++ +      + +     SF Q NA     + +  ++    I    +++ Y G G  
Sbjct: 271 IYGEKSIKENINGIEFHISPTSFFQINAKQAKRLYDIAISFFDDIDDKYIVDAYSGTGTI 330

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++A+   +V A+EI K + E        N + N++ +  + ++             L 
Sbjct: 331 GMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAVEK------------ELV 378

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THT 340
            +  ++ +  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 379 KLINNNQKIDTIIFDPPRKGLEASIIDTVAKLNLKEVVYISCNPSTFARDVKLFSEKGYV 438

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +++L   D FP T H+EC  L+V++
Sbjct: 439 LKKLQAVDMFPQTSHIECVGLIVKE 463


>gi|302023576|ref|ZP_07248787.1| RNA methyltransferase [Streptococcus suis 05HAS68]
          Length = 452

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 146/381 (38%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QLA K  ++   +              +    P+ YR +A   +      L    F 
Sbjct: 88  YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDNPLAYRNKAAVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + + I+ F      I+AL++   +++  + L+P        L+R  + +  + + Q
Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169
               +VT    R           RL          +Q I   N T     +++      E
Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEFRLLHGSE 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +        +     SF Q N  +   + +  +   +    D+ ++ Y G G   L  A
Sbjct: 264 TIADTMLGNEFEISAPSFYQVNTEMAEKLYQTAIDFAELSADDVVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+ + +V  ++ N A N ++NV  V  S++   Q    +            
Sbjct: 324 KQVKHVYGVEVVERAVLDSQKNAARNGIDNVTYVCDSAESAMQKWVAD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   IFVDPPR GL ++ +    +     I+YISCN  ++ RD+ +     + + ++ 
Sbjct: 372 GVKPTVIFVDPPRKGLTESFIKASTSVKPEKIVYISCNVATMARDIKLYEELGYKLTKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D FP T H+E   LL ++ 
Sbjct: 432 PADLFPNTHHIEVVGLLEKRN 452


>gi|289578782|ref|YP_003477409.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
           Ab9]
 gi|289528495|gb|ADD02847.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
           Ab9]
          Length = 450

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 156/392 (39%), Gaps = 48/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGDD 57
             T     Y +QL  K + +++++    + + +   I +S   H YR + E+    D + 
Sbjct: 79  GCTYQNVDYLEQLKIKENIVKKLLEKEGIKDYKFLGIVKSPKEHGYRNKMEYTFGKDKEG 138

Query: 58  LYHIMFDQQTK--ERMRIDYFMPGSL------------LINALMIEMMATIRLEPLLRAK 103
              +   ++ +  E +  D                    IN  +         E  LR  
Sbjct: 139 NAALGLHRKGRFYEVIMTDKCNIVDGDFIKALTLTFDYAINKRLP-FYDKKTHEGFLRHL 197

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR------LRDALHARKYQIQLIGRANK 157
           + +    + +    IVT    +       E          L   LH +           +
Sbjct: 198 VVRKASKSREILLNIVTTTQLKHDFTELIEIYKNANFGSHLVGVLHTQNDSWSDAVVCER 257

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
            ++   RDY+ E +      L ++    SF Q N+     + E V      +    + +L
Sbjct: 258 LEVLYGRDYLIEEIL----DLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDL 313

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G   +++A    +V+ +E+ + +V +AR N   N + N   +       +Q ++  
Sbjct: 314 YSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLKNCTFIAGD---VSQKLKEI 370

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSI 334
           +E            +   + VDPPRSG++   +  +V+  P  ++Y+SCNP+SL RDL +
Sbjct: 371 KE------------QPDVVIVDPPRSGINPKALKDIVKFNPQKVVYVSCNPESLARDLKV 418

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365
            S   + ++++   D FPYT H+E  VL+ +K
Sbjct: 419 FSEGGYKVDKVKCVDMFPYTYHVETVVLMEKK 450


>gi|168181545|ref|ZP_02616209.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
 gi|237796317|ref|YP_002863869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           Ba4 str. 657]
 gi|182674982|gb|EDT86943.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
 gi|229260413|gb|ACQ51446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           Ba4 str. 657]
          Length = 453

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 149/393 (37%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML-----AFQVPNLQIFRSEPIHYRMRAEFHIW--HD 54
             +     YE+QL  K ++L ++        F    ++    E   YR + EF       
Sbjct: 79  GCSTQYIPYEKQLELKEEQLLKLFKSKEIRGFDFLGVEK-SPEEYEYRNKMEFTFGDMEK 137

Query: 55  GDDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102
           G DL   M  +      + +D                    N   +     +  E  LR 
Sbjct: 138 GGDLTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRN 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRAN 156
            + +    T +    IVT                  EC   ++  LH     +  + + +
Sbjct: 198 LVIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKGECKGEIKGILHTINDTLSDVVQVD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           K +I   RDY+ E L      L ++    +F Q N+     +   V          ++ +
Sbjct: 258 KLEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G    ++A    +V+ VE+ + +V+AA  N   N +NN + +     +  + +++
Sbjct: 314 LYCGTGTIGQIVASKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ 373

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL 
Sbjct: 374 ---------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLK 418

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            L    + +E++   D FP+T H+E  VLL RK
Sbjct: 419 YLIDNGYKLEKVKGMDMFPHTPHLETCVLLQRK 451


>gi|300172822|ref|YP_003771987.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887200|emb|CBL91168.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
          Length = 464

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 142/382 (37%), Gaps = 45/382 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +YE QL  K  ++ QM     V       +    P  YR +A+  +      L    + +
Sbjct: 99  KYEAQLTFKQHQIEQMFKKVNVEVDVKPTLGMENPTKYRNKAQVPVQLINGRLETGFYRR 158

Query: 66  QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            + + +  D F      ++            L I        + ++R  + +  Y + + 
Sbjct: 159 GSHKLVPTDDFYIQDPKVDEAVVVTRDILRDLGISAYDEETNKGVVRHIMARRGYYSHEL 218

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-------CLDRDYV 167
              IVT    + L DA  E A RL+  L   K  I  I   +   I           + +
Sbjct: 219 MVVIVTNT--KKLPDAT-EIATRLQAKLPELKSFIHNINNHDTNVIMGQWNETIWGANEI 275

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            ++L        +    NSF Q N      +           + D +++ Y G G  +L 
Sbjct: 276 HDQLMDKD----FVIGPNSFYQVNPQTTATLYTLAAEKAGLKKTDIVVDAYSGIGTITLS 331

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +A    ++  VE+ + +VE A  N   NH+ NV  V   + E       +          
Sbjct: 332 IADKVKKIYGVEVVETAVEDAEKNAKNNHIENVSFVTADAPEQMVKWAED---------- 381

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDL-SILSTTHTIE- 342
               +   +FVDPPR GL    +  V A      +YISCNP +L RD   IL+    I+ 
Sbjct: 382 --GLKPNVVFVDPPRKGLTAELIFAVSAMKPETFVYISCNPATLARDAVQILAEGFKIDG 439

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +   DQFP T H+E   +  R
Sbjct: 440 AVQPIDQFPQTTHVESITVFKR 461


>gi|315651321|ref|ZP_07904348.1| TrmA family RNA methyltransferase [Eubacterium saburreum DSM 3986]
 gi|315486420|gb|EFU76775.1| TrmA family RNA methyltransferase [Eubacterium saburreum DSM 3986]
          Length = 418

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 150/388 (38%), Gaps = 35/388 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
               +   Y + + EK+     ++  +   +  +  S P HYR +       +   +   
Sbjct: 26  GCDYINSSYNKHVKEKLAIANSLIKKYGKFDGIVSMSNPYHYRNKVSAVFGFENKKIIAG 85

Query: 62  MFDQQTKERMRIDYFMP----GSLLINALM-------IEMMATIRLEPLLRAKLFQIDYL 110
            +++ T   +     +      S +I  +        I+          LR  L ++   
Sbjct: 86  TYEKNTHRVVDTKNCLIEDKKASAIIQTIKKMCISFKIKAYDEDSGFGFLRHVLIRVGK- 144

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YV 167
             +S Q +V L+   ++          LR         +Q I   N + +  DR+   Y 
Sbjct: 145 --KSGQIMVVLVTSNVIFQNKNAFIKVLRGEHPEITTIVQNINNKNTSMVLGDREIVMYG 202

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
              +T     L ++    SF Q N      +    +    G+QGD  LL+ Y G G   L
Sbjct: 203 KGYITDELCGLTFKISPKSFYQVNRDQTEKLYSQAIE-YAGLQGDEVLLDAYSGIGTIGL 261

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           + ++    V++VE+ K S + A  N   N++ NVK     +  F              D+
Sbjct: 262 IASKCVKEVISVELNKDSHKDAITNAKINNIKNVKFYNADATAFIN------------DL 309

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                +   + +DPPR+G  D  +  V       ++Y+SCNP++L RDL +     +  E
Sbjct: 310 AAAGEKIDVVILDPPRTGSTDEFIAAVGRLKPKKVVYVSCNPETLARDLEVFKKHRYRFE 369

Query: 343 RLALFDQFPYTRHMECGVLLVRKPSGWH 370
           +  + D F +TRH+E  VLL +  S  H
Sbjct: 370 KGMVVDCFCHTRHVEGVVLLSKLDSKNH 397


>gi|288904724|ref|YP_003429945.1| RNA methyltransferase, TrmA family [Streptococcus gallolyticus
           UCN34]
 gi|288731449|emb|CBI13001.1| putative RNA methyltransferase, TrmA family [Streptococcus
           gallolyticus UCN34]
          Length = 450

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 138/386 (35%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D + Q +  F+    +       +    P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLEFKDDLIAQSLKKFKPAGYENYDIRHTLGMEVPYHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
              +   +F++ +   + I   +    L  A++  +   +    +          +R  +
Sbjct: 141 KGSVKSGLFEEGSHRLVDIRDCLVQDELTQAIINRVTELLEKHHIPIYDERKIAGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    T+Q     +T   ++   +          ++                 KT++  
Sbjct: 201 IRKAIATNQVQLIFITSRDVFLAPVIKQLTAEFDMIKGIAVNVNRSKSSEIYGEKTEVIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
               + E +        +     +F Q N      +    +AA    + D +++ YCG G
Sbjct: 261 GNADISEEVL----DYQFSLSPRAFYQLNPQQTEVLYGQAVAALDVSENDHVIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A     V  ++I   +V  A+ N       N        +E      +E     
Sbjct: 317 TIGFAFAAKVKSVRGMDIIPEAVADAKKNAQRMGFENTHYEAGRVEEIIPKWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  LS  +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLDTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V LVRK
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLVRK 450


>gi|282889691|ref|ZP_06298230.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500265|gb|EFB42545.1| hypothetical protein pah_c004o034 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 449

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 151/389 (38%), Gaps = 50/389 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L+   Y +QL  K   +   +           +  +   + + YR + +  +    D
Sbjct: 81  GCQLMHLGYPKQLEMKRQIVLNALERIGHLKNISIDPCVSSPQELEYRNKIQLPVMMKPD 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLF 105
            L   ++ + +   + +D+ +               L+    I        + +LR  L 
Sbjct: 141 GLTVGLYARNSHTIIPVDHCLIHCEQGENVYQSVLKLLKQSDIAPYDERTGKGVLRHLLI 200

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---- 161
           +    TS+S   +V L+  +    + +  A ++  A    K  IQ I R     I     
Sbjct: 201 KSALQTSES---LVILVTSQEKCTSLQALAQQIMQACPEVKGVIQNINRKRDNVILGTDW 257

Query: 162 ---LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
                + Y+ E +        +    ++F Q N      + + VL+ A        L+ +
Sbjct: 258 HTLAGKSYIREMICDHH----FHISPSAFFQVNPAQAESIYQHVLSLADLDKTKTFLDAF 313

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L+ A      + +E    ++E A  N   N ++N       ++   Q+     
Sbjct: 314 CGVGTMTLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFYCDHAESKIQS----- 368

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
               LKDID        +F++PPR G +++ +  ++      ILY+SC+P +L RDL IL
Sbjct: 369 ----LKDID-------VVFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLKIL 417

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLV 363
               + IE++  FD FP T H+E  V L 
Sbjct: 418 VQHGYQIEQVTPFDMFPQTAHVETVVKLT 446


>gi|323705906|ref|ZP_08117477.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534704|gb|EGB24484.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 452

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 162/392 (41%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
               L   Y+ QL  K D ++ ++    +   +    +   +   YR + E+    D + 
Sbjct: 79  GCAYLNINYKDQLKLKEDYVKSLLDEAGIKGFEFLGIVGSPDVFSYRNKMEYTFGIDDNG 138

Query: 58  LYHI-------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKL 104
           +  +        +D  T E  RI      + L N L      ++        E  +R  +
Sbjct: 139 IMQLGLHIKGRYYDIITTEDCRIVDSDFIACLKNVLDYAKQHSLPHYNIKTHEGYMRNLV 198

Query: 105 FQIDYLTSQSDQAIVTLIYHR----LLDDAWRECAIR--LRDALHARKYQIQLIGRANKT 158
            +    T +    IVT    +     L    +   ++  L   LH          +  K 
Sbjct: 199 IRKAANTGEILINIVTTSQKKHDFSKLASELKNIKLKGKLVGILHTVNDSYSDAVKCEKL 258

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELY 217
           ++   RDY+ E +      L ++    SF Q N+     +          I   +L +LY
Sbjct: 259 EVLYGRDYIMEEIL----GLKFKISAFSFFQTNSKGAERLYSVAREFAGDISNKILFDLY 314

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   +++A    +V+ +E+ + +V+AAR N   N +NN++ +     +         
Sbjct: 315 CGTGTIGMIMAPLSKKVVGIELVEEAVDAARENARLNGLNNIQFIAGDVAQ--------- 365

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP-HILYISCNPDSLCRDLSIL 335
              R+K+I+    +   + +DPPR G++  A + +++  P  I+Y+SCNP SL RDL +L
Sbjct: 366 ---RIKEIN---DKPDVVVLDPPRPGVNPKAVMDIIKLNPEKIIYVSCNPVSLVRDLKML 419

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
               + +E++   D FP+T H+E  VLL  K 
Sbjct: 420 IQRQYKVEKVKCVDMFPHTYHIETVVLLTNKK 451


>gi|302875488|ref|YP_003844121.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
 gi|307687940|ref|ZP_07630386.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           cellulovorans 743B]
 gi|302578345|gb|ADL52357.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
          Length = 455

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 160/394 (40%), Gaps = 47/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIW--HDG 55
             T     YE+QL  K +++ ++     +   +        E  HYR + EF       G
Sbjct: 81  GCTHQYLDYEKQLEFKKNQVLKLFEKKNITGFEFEGIEGSPEMFHYRNKMEFTFGDMEKG 140

Query: 56  DDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT--- 111
            ++   +  +  +   + +D           ++ E +  ++ +   + ++   +      
Sbjct: 141 GEITLGLHARGMSFGILTVDQCYLVEEDYRTILKETLEYVKEKGFPKYRVMSREGFMRNL 200

Query: 112 -----SQSDQAIVTLIYHRLLDDAWRECAIRL---------RDALHARKYQIQLIGRANK 157
                  + + ++ ++    L++ + E   RL         +  LH          + ++
Sbjct: 201 IIRQGKNTRELMINVVTTSQLNEDFIELKERLLKLPLENKIKGILHTINDSFSDAVKIDE 260

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            K+   +DY+ E L      L ++    SF Q N+     +   V          ++ +L
Sbjct: 261 LKVLYGQDYITENLL----GLNFKISPLSFFQTNSKGAEKLYSIVKEYIGESDDKVVFDL 316

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A    +V+ +E+ + +V+AA  N   N + N K +     E  + ++  
Sbjct: 317 YCGTGTIGQIVAPKAKKVIGLELIEEAVKAAEINAELNGLTNCKFIAGDVAETIKTIKE- 375

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +  TI +DPPR+G+  A +  V  +   +I+Y+SCNP+SL  +L  
Sbjct: 376 --------------KPDTIILDPPRAGVSSAAMKYVIDFDAKNIVYVSCNPESLVVNLKE 421

Query: 335 LS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           L    + ++++ + D FP+T H+E  V L RK S
Sbjct: 422 LEAAGYRVDKVRVKDMFPHTPHVETVVRLQRKHS 455


>gi|326692440|ref|ZP_08229445.1| RNA methyltransferase [Leuconostoc argentinum KCTC 3773]
          Length = 464

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 137/382 (35%), Gaps = 39/382 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +Y  QL  K  ++ Q+     +    +  I  ++P  YR +A+  +      L    + +
Sbjct: 99  KYAAQLEFKQRQVEQLFKKVNIDVAVSPTIGMTDPTKYRNKAQVPVQEINGRLETGFYRR 158

Query: 66  QTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            +   + ++ F      ++            L +        + ++R  + +  Y + + 
Sbjct: 159 GSHNLVPVEDFYIQDPKVDEAVTVTRDILRDLGLSAYDETTKKGVVRHIMARRGYYSHEL 218

Query: 115 DQAIVTLIYHRLLDDA----WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
              IVT        D      +     L+  +H   +    +      +     D + ++
Sbjct: 219 MVVIVTNTKRLPQADEIATRLQAKLPELKSFIHNINHDDTNVIMGQWNETIWGADDIHDQ 278

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR 229
           L        +    NSF Q N      +             ++ ++ Y G G  +L +A 
Sbjct: 279 LMGKD----FVIGPNSFYQVNPQTTATLYTLAAEKAGLKPTNIAVDAYSGIGTITLSIAD 334

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V  VE+ + +V  A  N   N ++NV  V   + E   A   E             
Sbjct: 335 KVKHVYGVEVVENAVADAEQNARNNQIDNVTFVTADAPEQMVAWAAE------------G 382

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIER-LA 345
            +   +FVDPPR GL    +  V A      +YISCNP +L RD   IL+    I+  + 
Sbjct: 383 LKPNVVFVDPPRKGLTAELISAVAAMAPETFVYISCNPATLARDAVQILAEGFEIDGPVQ 442

Query: 346 LFDQFPYTRHMECGVLLVRKPS 367
             DQFP T H+E   +  R  +
Sbjct: 443 PLDQFPQTTHVETITVFKRVKA 464


>gi|309800304|ref|ZP_07694477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
           SK1302]
 gi|308116088|gb|EFO53591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
           SK1302]
          Length = 454

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 149/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + +++I        PI YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGISDVEIADTLGMENPIKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFYIQDPVIDQVIVALRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHHSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     + +   +    +   +     Q        + +     DY+ +
Sbjct: 208 IMIILVTTRPKVFRVEQVIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWRTLYGPDYITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        ++    +F Q N  +   + +  +   +    D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----FQISGPAFYQVNTEMAEKLYQTAIDFAELKDNDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           ++   V  VE+   +VE ++ N   N++ N   V  +++   +   +E            
Sbjct: 324 KYVKEVHGVEVIPEAVENSQKNAVLNNITNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPTAILVDPPRKGLTESFIKASVQTGANRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 432 PVDLFPQTHHVEAVALLSK 450


>gi|150391401|ref|YP_001321450.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
 gi|149951263|gb|ABR49791.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens
           QYMF]
          Length = 451

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 154/383 (40%), Gaps = 47/383 (12%)

Query: 10  YEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIW--HDGDDLYHIMF 63
           YE QL EK  +++++       ++         E   YR + EF       G  L   M 
Sbjct: 88  YEHQLKEKEAQVKRLFEEDNIQYENWLPIEGSPEAFGYRNKMEFSFGDEEKGGPLTLGMH 147

Query: 64  DQQTKE-RMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLT 111
            +      + +D  +       +++  ++   +            E  LR  + +  + T
Sbjct: 148 KRGKHHDIVTVDQCLIMDEDFRSILTVILEFFKQREIPHYSSTRHEGYLRHLVVRKAHYT 207

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANKTKICLDRD 165
            +    +VT     +  +   E         +L  +LH     +  + ++++T + + +D
Sbjct: 208 KEILINLVTTTQSDINIEGLVEEIKALSLKGKLVGSLHTFNDNLADMVQSDRTDVLIGQD 267

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           Y  E L      L ++    SF Q N+     +   V          ++ +LYCG G   
Sbjct: 268 YFSEELL----GLRFKISAFSFFQTNSLGAEKLYSIVRDFVGQADDQVVFDLYCGTGTIG 323

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
            ++A+   +V+ +EI + +V AA  N   N + N   +    K               K 
Sbjct: 324 QIVAQKAKKVIGIEIVEDAVTAANENAKLNGLTNCHFIAGDVK---------------KK 368

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTI 341
           I   + +   I +DPPR+G+  A +  +  +    I+Y+SCNP S+ +DL++L    + +
Sbjct: 369 IKELNDKPDIIILDPPRAGIHAAALQDIIDFNTEKIVYVSCNPKSMVKDLAMLEAHGYQV 428

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +++   D FP+T H+E   LL +
Sbjct: 429 KKVKCMDMFPHTPHVEAVTLLTK 451


>gi|257463545|ref|ZP_05627938.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. D12]
 gi|317061100|ref|ZP_07925585.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D12]
 gi|313686776|gb|EFS23611.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D12]
          Length = 453

 Score =  258 bits (660), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 159/387 (41%), Gaps = 34/387 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K + +++++      N ++        E  +YR +          
Sbjct: 80  GCDFAMLKYEAQLRCKTNMVKEVIEKIGKLNGKLVLDCLPSPEEKNYRNKVIEPFSQKKG 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMI-------EMMATIRLEPLLRAKLFQIDY 109
            +    F +++ E   ++  M  S L N ++        E   T+  E   +  L  I  
Sbjct: 140 KIISGFFQKRSHEVFEVEENMLNSKLGNRIIEVFKMIANEEKLTVYDEKKHQGLLRNIMV 199

Query: 110 LTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+   +A+ V ++  + L+++ +   + +   +   K  + L     KT + L      
Sbjct: 200 RTNSFQEAMLVLVVNTKKLEESLKRILLEMTQRIPELK-SLYLSFNTKKTNVVLGDKNIC 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
            + ++ L      + +     SF Q N     H+ E  L+    I+  ++++ Y G G  
Sbjct: 259 IWGEKTLKEELFGIEFHISPTSFFQINVPQTKHLYEKALSLIPDIENKNVVDAYSGTGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            ++L++   +V A+EI + +          N + N+  +  + +     + +E       
Sbjct: 319 GMLLSKRAKKVYAIEIVESASRDGEKTAKENRITNIDFICGAVEVELDRLLKE------- 371

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
                  +   I  DPPR G++++ +  V     P ++YISCNP +L RDL I++   + 
Sbjct: 372 -----GKQLDAIVFDPPRKGIEESILRKVAEVGIPEMVYISCNPSTLARDLKIMADCGYQ 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +  FD FP T H+EC  LL R  S
Sbjct: 427 VGEIQPFDMFPQTSHVECIALLQRVKS 453


>gi|258508829|ref|YP_003171580.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|257148756|emb|CAR87729.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
 gi|259650133|dbj|BAI42295.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
          Length = 455

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 138/384 (35%), Gaps = 47/384 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D + Q +  F+    Q          + P HYR +A+F +      +   +
Sbjct: 91  YPAQLRFKRDVVAQALAKFKPLGWQHYDLKPTSGMTHPTHYRNKAQFPVREIDGHVRAGL 150

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + + +F+               L+  L I +    +   +++  + +  + T
Sbjct: 151 YAPGSHRLIPLTHFLTQAPLTMKVVTTLCQLLEDLQIPIYNEKKHAGIVKTLVVRESFST 210

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
               Q  VT I +        +    +   L       Q I            +++   +
Sbjct: 211 G---QVQVTFITNSAKLPKQAQLITTIAAQLPMVVSIAQNINPGNTSLIWGKDSRLLAGQ 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y+ E L+       ++    +F Q N      +      A +    D L++ YCG G  
Sbjct: 268 PYIQETLS----GRTFQLSPQAFLQLNPKQTEQLYAIAKDALQLAPDDTLIDAYCGIGTV 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA     +  ++    ++  A+ N   N  NN       ++       +E       
Sbjct: 324 GMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTHYFVGKAETLFPKWLKE------- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTI 341
                  R   + VDPPRSGL+   +  ++Q  P    YISCNP +L RDL  L+  + +
Sbjct: 377 -----GIRPNAVIVDPPRSGLERPFIDALLQLSPQKFAYISCNPSTLARDLVPLAKHYQV 431

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           + +   D FP T   E  V   R+
Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTRR 455


>gi|290579884|ref|YP_003484276.1| putative RNA methyltransferase [Streptococcus mutans NN2025]
 gi|254996783|dbj|BAH87384.1| putative RNA methyltransferase [Streptococcus mutans NN2025]
          Length = 459

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 138/388 (35%), Gaps = 39/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D L+Q +  F+    +       I    P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLDFKKDLLKQALKKFKPQGYETYDVRATIGMEHPQHYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAK 103
           G  +   +F +Q+   + I   +               L++   I +    R    +R  
Sbjct: 141 GGSVRVGLFKEQSHHLVDIKDCLIQDELTQKIVNRVCQLLDDYNIPVYDERRHFAGVRTI 200

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLD--DAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           + +    T+Q     VT     L+            ++                 KT+I 
Sbjct: 201 MVRKSQATNQVQLIFVTSKEVNLVGIIRDLTGYFPEIKTVAVNFNSSKSSAIYGQKTEIL 260

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
              D + E +        +     +F Q N      +    L A      D L++ YCG 
Sbjct: 261 WGIDSISEEVL----DYSFSLSPRAFYQLNPKQTQVLYHQALQALDVTAEDHLIDAYCGV 316

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+  L  A     V  ++I   ++  A+ N       N       ++       ++    
Sbjct: 317 GSIGLAFANKVKSVRGMDIIPEAITDAKRNAERMGYTNTYYEMGKAENIIPKWYKD---- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    Y+   + VDPPR+GLD+  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 373 --------GYQASALIVDPPRTGLDEKLLKTLLTYQPEKMVYISCNVSTLARDLVQLVKI 424

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366
           + +  +   D FP+T   E  V LV++ 
Sbjct: 425 YEVNYIQSVDMFPHTARTEAVVKLVKRK 452


>gi|306832906|ref|ZP_07466038.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC
           700338]
 gi|304424805|gb|EFM27939.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 450

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 139/386 (36%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y++QL  K D + Q +  F+    +       +    P HYR + +F     
Sbjct: 81  GCQIMHLRYDKQLEFKDDVIAQSLTKFKPAGYENYDIRHTLGMEVPYHYRAKLQFQTRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
              +   +F++ +   + I   +    L  A++  +   +    +          +R  +
Sbjct: 141 KGSVKSGLFEEGSHRLVDIRDCLVQDELTQAIINRVTELLEKHHIPIYDERKITGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    T+Q     +T   ++   +          ++                 KT++  
Sbjct: 201 IRKAIATNQVQLIFITSRDVFLAPVIKQLTAEFDMIKGIAVNVNRSKSSEIYGEKTEVIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
               + E +        +     +F Q N      +    +AA    + D +++ YCG G
Sbjct: 261 GNADISEEVL----DYQFLLSPRAFYQLNPQQTEVLYGQAVAALDVSENDHVIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A     V  ++I   ++  A+ N       N       +++      +E     
Sbjct: 317 TIGFAFAAKVKSVRGMDIIPEAIADAKKNAQRMGFENTHYEAGRAEDIIPKWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+G+DD  +  +  Y    ++Y+SCN  +L RDL  LS  +
Sbjct: 372 -------GYRADALIVDPPRTGIDDKLLDTILKYQPAKMVYVSCNTATLARDLVKLSKVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V LVRK
Sbjct: 425 DVHYIQSVDMFPHTARTEAVVKLVRK 450


>gi|306833840|ref|ZP_07466965.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC
           700338]
 gi|304424034|gb|EFM27175.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus bovis ATCC
           700338]
          Length = 456

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 149/379 (39%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  ++   +     + ++++      + P  YR +A+  +      L    F 
Sbjct: 88  YAEQLKFKRKQVMDNLYKTAGISDVEVSETLGMAHPYAYRNKAQVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + M I  +   +  I+ L     +++    L+P        L+R  + +  + +  
Sbjct: 148 KHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSG- 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDE 169
             + ++  +  R       +   ++     A K  +Q I   N T     ++    Y  +
Sbjct: 207 --EMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKN-TNAIFGKEFKTLYGKD 263

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +  +     Y     SF Q N  +   + +  +  +     D +++ Y G G   L  A
Sbjct: 264 TIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDFSDLTPKDIVIDAYSGIGTIGLSFA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           ++   V  VE+ + +VE A+ N A N + N   +   ++       ++            
Sbjct: 324 KNVKAVYGVEVIEEAVEDAKRNAALNSITNAHYIADPAEHAMATWSKD------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGM-VQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL +  +   V   P  I YISCNP ++ RD+ +     + + ++ 
Sbjct: 372 GIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPATMARDIKLYQELGYKLIKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LLVR
Sbjct: 432 PVDLFPNTHHVEAVSLLVR 450


>gi|227529794|ref|ZP_03959843.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC
           49540]
 gi|227350278|gb|EEJ40569.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus vaginalis ATCC
           49540]
          Length = 464

 Score =  258 bits (660), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 137/382 (35%), Gaps = 42/382 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K   +   +  F+            I       YR +A F +      +   +
Sbjct: 99  YPAQLRFKRQVVLDSLEKFKPYGYRNYDVRPTIAAPHEYGYRNKASFQVRMIDGHVAAGL 158

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   + + + I                    I  L I +    R   +++  + +    T
Sbjct: 159 YKANSHDLVDIQECAVQMPNTMKVIRTVVQAIEDLQIPVYDEERNSGIIKTLVVRESAAT 218

Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
            +    ++T    L + R L +A +E   ++   +         +    +      ++Y+
Sbjct: 219 GEVQLTLITNTSKLPHKRQLLEAIQEQLPKVVSVMQNVNPGDTPLIWGEQMIHLAGQEYI 278

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            E L      L +R    SF Q N      + E    A +   GD L++ Y G G   L 
Sbjct: 279 TESLM----GLDFRLSARSFLQLNPEQTETLYEEAAKALELSPGDTLIDAYAGIGTIGLS 334

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +E    +V  A+ N   N + N      S+++     R+E          
Sbjct: 335 LANRVKEVWGMETIPEAVADAKQNANLNGITNAHYEVGSAEDVIPQWRKE---------- 384

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
              + F  + VDPPR+GLD+  +  +  +      Y+SCN  SL R+L  L++ + ++ +
Sbjct: 385 --GHHFDALVVDPPRTGLDNDLIEQIIKERPAKFAYVSCNMASLARNLGRLTSVYHVDYI 442

Query: 345 ALFDQFPYTRHMECGVLLV-RK 365
              D  P T   E  V L  RK
Sbjct: 443 QPVDMMPQTTRCEAVVKLSIRK 464


>gi|315924682|ref|ZP_07920899.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621581|gb|EFV01545.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 458

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 139/348 (39%), Gaps = 38/348 (10%)

Query: 35  IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPG-------SLLINALM 87
           +     +HYR +A+F I  +G       + + + + + I + +          L++N  +
Sbjct: 128 VSADSAVHYRNKAQFKISEEG----IGFYAKGSHQVIPIAHCLNQMTPNDDLILILNQWV 183

Query: 88  IEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-RK 146
            +    I  E      L  I    ++    +VTLI   L        A RL+++L     
Sbjct: 184 KDSQIPIYREDSGTGNLRGILVRANRRGDIMVTLIAKTLSGVNTERLARRLQESLSELVS 243

Query: 147 YQIQLIGR------ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
           + I +           +T++      + E L        ++    SF Q N      +  
Sbjct: 244 FSININPNRGNRVLGEETRVIFGAPTISETLCGRE----FQISPASFFQVNTEQAEKLYR 299

Query: 201 WVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            V+  A    Q  + +LYCG G   + +A    +V  +E    ++  A+ N   N+++N+
Sbjct: 300 QVIRYANLTGQESVFDLYCGTGTIGICMADRARKVTGIEAVPEAIADAKENARRNNIDNI 359

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317
           +     S++            RL   D        + VDPPR G     +  +     P 
Sbjct: 360 QFFCGRSEKIMS--------ERLAAGDAA----DVVVVDPPRKGCARLLLETIVASGVPK 407

Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           I+Y+SCNP +L RD   L+   + +E +  FD FP T H+E  VL+++
Sbjct: 408 IVYVSCNPSTLARDCRCLADAGYRLEEVTPFDLFPGTGHVETVVLMLK 455


>gi|168186646|ref|ZP_02621281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           C str. Eklund]
 gi|169295463|gb|EDS77596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           C str. Eklund]
          Length = 450

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 150/392 (38%), Gaps = 49/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML-----AFQVPNLQIFRSEPIHYRMRAEFHIW--HD 54
             +     YE+QL  K +++ ++        FQ   +Q    E  +YR + EF       
Sbjct: 79  GCSHQFLSYEKQLEIKKEQVLKLFENANIDGFQFLGIQ-GSPEEFYYRNKMEFTFGDMEK 137

Query: 55  GDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRA 102
           G +L   M  Q      +  D         N ++  ++   R            E  LR 
Sbjct: 138 GGELTLGMHAQGKSFGIISADVCKIVDSDFNLILKTVLEYFRAQGLPHYRIMSHEGYLRN 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRAN 156
            + +    T +    +VT          + E    L         LH     +  + +A+
Sbjct: 198 LVIRKGKNTKEIMVNLVTTSQKDFDLTEFTEMLKELNYEGELTGILHTINDSLSDVVQAD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
             K+   RDY+ E +      L ++    SF Q N      +   V       +  ++ +
Sbjct: 258 SMKVLFGRDYIMEEVL----GLKFKISPFSFFQTNTKGAEALYSIVREFMGDAKSKVVFD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G    + A + ++V+ +E+ + +V+AA  N   N + N + +     +  + ++ 
Sbjct: 314 LYCGTGTIGQIAAHNAEKVIGIELIEEAVKAANENAKLNGLTNCEFLAGDVAKVIKDIK- 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL 
Sbjct: 373 --------------VKPDIIILDPPRPGVHPDALKYVTKFNAKDIIYVSCNPKTLVEDLK 418

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            L    + +E++ + D FP+T H+E  V L +
Sbjct: 419 YLIKEGYKVEKVKVKDMFPHTPHVESAVKLSK 450


>gi|307708648|ref|ZP_07645111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           NCTC 12261]
 gi|307615222|gb|EFN94432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
           NCTC 12261]
          Length = 459

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 152/379 (40%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L    F 
Sbjct: 91  YPEQLKFKTKQVKDSLYKIAGIDDIEVAETLGMKNPVKYRNKAQVPVRRVNGVLETGFFR 150

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 151 KNSHDLMPLEDFFIQDPVIDEVVVALRDLLRRYDLKPYDEKEQAGLIRNLVVRRGHYSGQ 210

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q        + +    +DY+ +
Sbjct: 211 IMVILVTTRPKVFRVDQLIEQLIKQFPDITSVMQNVNDQNTNAIFGKEWRTLYGQDYITD 270

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        Y+    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 271 QMLGTN----YQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSVA 326

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N   N+++N   V  +++   +   ++            
Sbjct: 327 KHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLKD------------ 374

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + + ++ 
Sbjct: 375 GIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDIKLYRELGYELNKVQ 434

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LLVR
Sbjct: 435 PVDLFPQTHHVEAVSLLVR 453


>gi|229541608|ref|ZP_04430668.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
 gi|229326028|gb|EEN91703.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
          Length = 468

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/380 (21%), Positives = 155/380 (40%), Gaps = 45/380 (11%)

Query: 10  YEQQLAEKVDRLRQMML--AFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL +K   +++ +    F        I    P HYR + EF    DG    H   + 
Sbjct: 98  YEGQLKQKTAHVKEAIAAQGFDPALVRDTIGMDNPWHYRNKMEFTFAPDGSLGLHEQGNF 157

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114
           +  + + ++  +     +    +E+ A ++            E LLR  + +  + T + 
Sbjct: 158 R--KVIPLETCLIAGKEMVDGTMEVAAWVKEHGLKGYDKDAHEGLLRHLMVRQSFATGEM 215

Query: 115 DQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRDY 166
             A+  T      L +A R+ A R+       K  + L         +A KT +   RD+
Sbjct: 216 MLALFATKAPDGELAEAARDLAERITGKFPQVKSLLWLENTDWADRTQAEKTHVLSGRDF 275

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           + + +        YR   ++F Q N      +++  L   +  + + +++L+CG G FSL
Sbjct: 276 IYDEMG----GYRYRIWFDTFFQTNPVQAQKLVDLALEMGRPEKTEKMIDLFCGVGTFSL 331

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     +  +EI + S+E+A+ N   N ++N   +   +++    +        L   
Sbjct: 332 PFADRVGELAGIEIVETSIESAKRNAKDNGISNTYFLAKDARKGIDEVLESFGNPEL--- 388

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                    + +DPPRSG     +  +       I+Y+SCNPD+   D+  L    + + 
Sbjct: 389 ---------LLLDPPRSGAGGKVMRKIGRAKPQRIVYVSCNPDTFATDIKELEPFGYKLT 439

Query: 343 RLALFDQFPYTRHMECGVLL 362
            +   D FP+T H+EC  L+
Sbjct: 440 AVQPVDLFPHTVHVECVTLM 459


>gi|319947529|ref|ZP_08021760.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
           ATCC 700641]
 gi|319746308|gb|EFV98570.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
           ATCC 700641]
          Length = 450

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/387 (19%), Positives = 140/387 (36%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  +Y +QL  K D L+Q +  +     +       +   +P +YR + +F     
Sbjct: 81  GCQIMHLKYSKQLEFKTDLLQQALKKYAPTGYENYLIHPTLGMEKPQYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
              +   ++ Q +   + +   +    +I  +   +   +    +          +R  +
Sbjct: 141 KGQVKAGLYAQNSHYLVELRDCLVQDPVIQEIANHVAELLTYYQIPISDDRNQFGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKIC 161
            +    T Q  Q IV       L D   +   +  + +                 KT+I 
Sbjct: 201 VRRARKTGQV-QMIVVTSRQLNLTDLVADLVKKYPEIVTVAVNLNTSKSSEIYGEKTQII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQETIREGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSPEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A     V  ++I   ++E A+YN       N      +++E      +E    
Sbjct: 316 GTIGFAFADKVKSVRGMDIIPEAIEDAKYNAKQMGFENTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GL    +  +   A   ++Y+SCN  +L RDL  L+  
Sbjct: 372 --------GYRADAVIVDPPRTGLGVQLIDTLLRYAPQKMVYVSCNVSTLARDLVDLTKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V LV+K
Sbjct: 424 YDVVYIQSVDMFPHTARTEAVVKLVKK 450


>gi|172056678|ref|YP_001813138.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
 gi|171989199|gb|ACB60121.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum
           255-15]
          Length = 461

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 143/386 (37%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    YE QL  K D +R         N++         +    YR +++F +  +G
Sbjct: 85  GCQLQHMSYEGQLRYKEDMVRNAFTKSTKLNVEKSDIRPTIGTTEWEYRNKSQFAVGKEG 144

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
             +   ++   +   + ID  +  +            ++N   + +  + + + ++R  +
Sbjct: 145 TQIVSGLYSANSNRLVAIDECIVQNKETLRVNKAVTKILNDYNVPVYNSAKQDGVIRNIV 204

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKIC 161
            +    T +    +V         +        +   +        ++       +T+I 
Sbjct: 205 VRTGIKTGEIQVVLVAFKDGFKDLEGLSRDIYDIPGVISVALNINDKMTSRVFGEQTEIL 264

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
              + ++E++        Y+    +F Q N      M  E V AA    +  +++ Y G 
Sbjct: 265 RGVERIEEKMG----EFTYQLSPRAFFQLNPEQAERMYGEIVKAAALTGEERVVDAYAGV 320

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G+  L +A     V  +EI + +VE A  ++     N+ + V   ++ +     +E    
Sbjct: 321 GSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQYVVGKAETWIPRWVKE---- 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-ST 337
                    +      VDPPRSG D   +  +       I+Y+SCNP +L RD   L   
Sbjct: 377 --------GWIPDVFIVDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLARDCDHLMKA 428

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            + +  +  +D FP T H+E  V+L 
Sbjct: 429 GYKVSYIQPYDMFPQTAHVEAIVVLE 454


>gi|253699961|ref|YP_003021150.1| RNA methyltransferase, TrmA family [Geobacter sp. M21]
 gi|251774811|gb|ACT17392.1| RNA methyltransferase, TrmA family [Geobacter sp. M21]
          Length = 447

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 152/389 (39%), Gaps = 39/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L+  +Y  QLA K   + +    +           I   + + YR  A+  +    +
Sbjct: 75  GCGLMQMRYPAQLAWKKALVTRQFRRYASLSEVAIKETIGSPKELGYRNTAKLVVAGKNN 134

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLF 105
           D    ++ + T + ++I+       LIN +            +++        LLR  + 
Sbjct: 135 DPVIGIYRRNTHDVLQIEDCGLHHPLINKVVKAAKAGIKKGKVQIYNPKSEMGLLRYLVV 194

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           ++     +S+QA+V L+      +     A  ++ A+       Q I  +    I  ++D
Sbjct: 195 RV---AEKSNQAMVVLVTTDQGYNEMHHLAKFIQQAVPEVAVVAQNINTSTGNVIFGNKD 251

Query: 166 YVD---ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
                 + L       I+    +SF Q N+G    + E V   A       ++++YCG G
Sbjct: 252 RSITKAQTLKAFVGDKIFNLSPHSFFQVNSGAARIIYEKVRELANLKGTERVIDVYCGIG 311

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA     V+ +E  + +V  A  N A N V N       +      +  E     
Sbjct: 312 GISLFLADQAREVVGIEFVEAAVADATINAALNRVENCHFEAGDAVHLIDEIGEE----- 366

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-T 338
                      + I ++PPR G D+  +  V A   P I+Y+SC+P++L RDL ILS   
Sbjct: 367 --------GGAELIVLNPPRKGCDEKVLRSVAAIKPPRIIYVSCSPETLARDLDILSGLG 418

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +    +   D FP T H+E   LL  K +
Sbjct: 419 YRTVEVHPVDMFPQTVHVEDVALLELKQA 447


>gi|326693112|ref|ZP_08230117.1| RNA methyltransferase [Leuconostoc argentinum KCTC 3773]
          Length = 506

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/390 (23%), Positives = 144/390 (36%), Gaps = 47/390 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QLA K D + Q +  FQ            I  + P  YR +A+F +   GD 
Sbjct: 136 LEHMTYPAQLAFKKDVIAQALEKFQPRGWTDYDLRDTIGMANPYEYRNKAQFPVRKIGDK 195

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L   M+ + + + + +                   L++ L + +    +    ++  + +
Sbjct: 196 LSVGMYKRSSHDLVDLPVVHTQDPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVKTIVAR 255

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-------IGRANKTK 159
             + T +    +VT       D A  E    +  AL       Q        I    +T 
Sbjct: 256 ASHTTGEVQLTVVTNTDGFPGDAALIE---AINQALPEVTGIFQNFNPGRTSIVWGEETI 312

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
               +DY++E +        ++    +F Q N      +    LAA      D L++ Y 
Sbjct: 313 KLWGKDYIEETIMGK----TFQLSPRAFMQLNYTQMTVVYNEALAALDLTHADKLVDSYA 368

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  +EI   +V+ A  N   NH+ N K    +++E     + E  
Sbjct: 369 GVGTIGLSLADKVGEVRGMEIIPEAVDDANINAEINHITNAKYEIGTAEELFPKWQAE-- 426

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                      +    + VDPPR+GLD A    +        +YISCN  SL RDL  L+
Sbjct: 427 ----------GWIADALVVDPPRTGLDTALRREILRTKPEKFVYISCNASSLARDLVDLT 476

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             + +E +   D FP T   E  V L  + 
Sbjct: 477 QAYQVEYIQSIDMFPQTARWEGVVKLTHRD 506


>gi|15673160|ref|NP_267334.1| hypothetical protein L193873 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|50401787|sp|Q9CGB9|YLJE_LACLA RecName: Full=Uncharacterized RNA methyltransferase yljE
 gi|12724144|gb|AAK05276.1|AE006350_3 conserved hypothetical protein [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 460

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 142/380 (37%), Gaps = 33/380 (8%)

Query: 7   IDQYEQQLAEK----VDRLRQMMLAFQVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHI 61
              Y++Q+  K    VD LR+       P L +  + + I+YR +A+  +      L   
Sbjct: 93  HLSYDEQVKFKHKQVVDILRKTAGKSDYPVLPVVEAIKTINYRNKAQIPVQMVDGLLTTG 152

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTS-Q 113
            + + +   + ++ F      I+A+++ +             E   +  L  I    +  
Sbjct: 153 FYRKNSHTLIPVEDFYIQHPEIDAVVLFLRDEFRKINLQAYDEKTRKGWLRNIVVRRAFH 212

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV----DE 169
           + + ++TL+          E  I            +QL   +      L ++++     +
Sbjct: 213 TGEMMITLVVTSKKLPEKVELVIDHLVERFTNIKSVQLNINSGTGSFILGKEFILLYGKD 272

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +T       Y+    +F Q N      + E          GD+ ++ Y G G   + +A
Sbjct: 273 FITDLMLDKTYQISAPAFYQVNTPQAEKLYETAYEFAGLKPGDVVIDAYSGIGTIGISMA 332

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               +V  +E+   +VE A+ N   N + N      ++++       E            
Sbjct: 333 DRVAKVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKIMPKWLSE------------ 380

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   IFVDPPR GLD+  +          I+YISCNP +  RD+       + ++++ 
Sbjct: 381 GIKPDVIFVDPPRKGLDEGFIKAAAMMNPRRIVYISCNPATFARDVVRFEADGYLLDKVQ 440

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+E      +K
Sbjct: 441 PVDLFPQTHHIELVASFNKK 460


>gi|326406728|gb|ADZ63799.1| 23S rRNA uracil-5-methyltransferase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 460

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 142/380 (37%), Gaps = 33/380 (8%)

Query: 7   IDQYEQQLAEK----VDRLRQMMLAFQVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHI 61
              Y++Q+  K    VD LR+       P L +  + + I+YR +A+  +      L   
Sbjct: 93  HLSYDEQVKFKHKQVVDILRKTAGKSDYPVLPVVEAIKTINYRNKAQIPVQMVDGLLTTG 152

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTS-Q 113
            + + +   + ++ F      I+A+++ +             E   +  L  I    +  
Sbjct: 153 FYRKNSHTLIPVEDFYIQHPEIDAVVLFLRDEFRKINLQAYDEKTRKGWLRNIVVRRAFH 212

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV----DE 169
           + + ++TL+          E  I            +QL   +      L ++++     +
Sbjct: 213 TGEMMITLVVTSKKLPEKVELVIDHLVERFTNIKSVQLNINSGTGSFILGKEFILLYGKD 272

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +T       Y+    +F Q N      + E          GD+ ++ Y G G   + +A
Sbjct: 273 FITDLMLDKTYQISAPAFYQVNTPQAEKLYETAYEFAGLKPGDVVIDAYSGIGTIGISMA 332

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               +V  +E+   +VE A+ N   N + N      ++++       E            
Sbjct: 333 DRVAKVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKIMPKWLSE------------ 380

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHTIERLA 345
             +   IFVDPPR GLD+  +          I+YISCNP +  RD+       + ++++ 
Sbjct: 381 GIKPDVIFVDPPRKGLDEGFIKAAAMMNPRRIVYISCNPATFARDVVRFEAEGYLLDKVQ 440

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+E      +K
Sbjct: 441 PVDLFPQTHHIELVASFNKK 460


>gi|325690909|gb|EGD32909.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 456

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 150/392 (38%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   I   +  ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +G +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLGTIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           S  + +  +   D FP+T   E  V L ++ S
Sbjct: 421 SQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|319939659|ref|ZP_08014018.1| TrmA family TRNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
 gi|319811248|gb|EFW07554.1| TrmA family TRNA methyltransferase [Streptococcus anginosus
           1_2_62CV]
          Length = 452

 Score =  258 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 148/390 (37%), Gaps = 46/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLRQALKKFAPQGYENYEIRPTIGMQEPQYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL----LINALMIEM------MATIRLEPLLRAKL 104
             D+   ++ Q +   + +   +        +IN + + +      +   R    +R  +
Sbjct: 141 KGDVKAGLYAQNSHYLISLKNCLVQDKVTQKIINKVALLLGKYNLPIYDERKNAGIRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIYH------RLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            +    T Q     VT          R L   + E      +    +  +I      ++T
Sbjct: 201 IRRARKTGQVQMIFVTGKKLDFSPIIRDLSAEFPELETVAVNYHTTKSSEI----YGDRT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I   ++ + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGKETIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVTSEEHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N A    NN      +++       +E 
Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAARLGFNNTHYETGTAESIIPRWYKE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  SL RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSSLARDLVQL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + +  +   D FP+T   E  V L+RK
Sbjct: 421 SKVYDVHYIQSVDMFPHTARTEAVVKLIRK 450


>gi|289167359|ref|YP_003445628.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6]
 gi|288906926|emb|CBJ21760.1| tRNA methyltransferase, TrmA family [Streptococcus mitis B6]
          Length = 440

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 147/391 (37%), Gaps = 40/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 66  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 125

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 126 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 185

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ D  ++    +  A++    +   I    KT+I 
Sbjct: 186 VRRARKTGQVQIIIVTNRQLNLTQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 244

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
              + + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 245 WGEESIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYNEAVKALDVNKEDHLIDAYCGV 300

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 301 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEVGTAEEIIPRWYKE---- 356

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 357 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 408

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGW 369
           + I  +   D FP+T   E  V L++K S  
Sbjct: 409 YDIHYIQSVDMFPHTARTEAVVKLIKKVSKK 439


>gi|170761366|ref|YP_001788185.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169408355|gb|ACA56766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 450

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 147/392 (37%), Gaps = 49/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML-----AFQVPNLQIFRSEPIHYRMRAEFHIW--HD 54
             +     YE+QL  K ++L ++        F    ++    E   YR + EF       
Sbjct: 79  GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLEVEK-SPEEYEYRNKMEFTFGDMEK 137

Query: 55  GDDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102
           G DL   M  +      + +D                    N   +     +  E  LR 
Sbjct: 138 GGDLTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRN 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRAN 156
            + +    T +    IVT                  EC   ++  LH     +  + + +
Sbjct: 198 LVIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           K +I   RDY+ E L      L ++    +F Q N+     +   V          ++ +
Sbjct: 258 KLEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G    ++A    +V+ VE+ + +V+AA  N   N +NN + +     +  + +++
Sbjct: 314 LYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ 373

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL 
Sbjct: 374 ---------------KPDIIILDPPRPGVHPVALEYVVKFQPKEIIYVSCNPKTLVDDLK 418

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            L    + +E++   D FP+T H+E  V L +
Sbjct: 419 YLIDNGYKLEKVKGMDMFPHTPHVETVVRLSK 450


>gi|237742795|ref|ZP_04573276.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229430443|gb|EEO40655.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 453

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 161/384 (41%), Gaps = 34/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M     + ++Q+       +  +YR +         +
Sbjct: 80  GCDFAMLKYESQLKYKRLMVEEVMKKIAGLSDIQVNDVLASEDIYNYRNKIIEPFSVYVN 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++ E+   +    +        +  L  I  
Sbjct: 140 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKEILNKNKISVYDENAHKGILRNIMI 199

Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+V LI +   + +  ++   +LR+ +   K  I +   + KT   +      
Sbjct: 200 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGEKNIL 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y ++ +      + +     SF Q N      + +  ++    I    +++ Y G G  
Sbjct: 259 IYGEKSIKENINGIEFHISPTSFFQINVKQAKRLYDIAISFFDDIDDKYIVDAYSGTGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++A+   +V A+EI K + E        N + N++ +  + ++             L 
Sbjct: 319 GMIMAKKAKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAVEK------------ELV 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THT 340
           ++  ++ +  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 367 NLINNNQKIDTIIFDPPRKGLEASIIVTVAKLNLKEVVYISCNPSTFARDVKLFSEKGYV 426

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +++L   D FP T H+E   L+ R
Sbjct: 427 LKKLQAVDMFPQTSHVETIALIQR 450


>gi|293364145|ref|ZP_06610872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
 gi|291317323|gb|EFE57749.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
          Length = 454

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANCLAELLTYHQIPITDERKTLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ D  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A     +  ++I   ++E A+ N      +N      +++E      ++    
Sbjct: 316 GTIGFAFANKVKSLRGMDIIPEAIEDAKRNAQRMGFDNTHYEAGTAEEIIPRWYKD---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLARDLVRLVKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP+T   E  V LVRK
Sbjct: 424 YDLQYIQSVDMFPHTARTEAVVKLVRK 450


>gi|307704007|ref|ZP_07640940.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597]
 gi|307622431|gb|EFO01435.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK597]
          Length = 451

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 148/387 (38%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLYQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDRETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEIVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYNEAVKALDVNKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N+     +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNIHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|218283642|ref|ZP_03489604.1| hypothetical protein EUBIFOR_02197 [Eubacterium biforme DSM 3989]
 gi|218215702|gb|EEC89240.1| hypothetical protein EUBIFOR_02197 [Eubacterium biforme DSM 3989]
          Length = 431

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 138/370 (37%), Gaps = 26/370 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
              L    Y  QL  K   ++++    +V    +    P +YR +A+F +      +   
Sbjct: 79  GCQLQHMSYAYQLDYKYKHVKKLFEGIEVK-PILGMDNPWYYRNKAQFPVKIKDGKVQMG 137

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
            + Q + + +          +IN +   +   I L+     +   I + ++   Q +   
Sbjct: 138 FYRQHSNDVVTCKECKIQDHVINEVFSFIQKKITLKMAQDLRHVFIRHSSTDEIQVVFIG 197

Query: 122 IYHRL---LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
              +    L D  +     +   +     +   +   +  K+    DY+ E        L
Sbjct: 198 KNEKNIISLSDQLKNTFANITSIVFNYNTRNDNVILGDTYKVLYGNDYIIEECLGNKVKL 257

Query: 179 IYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
            ++    +F Q N      +    + AA        +++Y G G   + +++H   V+ V
Sbjct: 258 HFK----AFFQVNPKQMEVLYSQAIKAANLTGNETCIDMYAGTGTIGMAVSQHAKSVIGV 313

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI K +V+ A  N   NH+++   V   + +F                D    +   IF+
Sbjct: 314 EIVKEAVDNANDNTKMNHLDHCHYVCQDATDFAH--------------DHKEDKIDVIFI 359

Query: 298 DPPRSGLDD-ATVGMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354
           DPPR G+ +      +   P  I+Y+SCNP +L RDL I     +  E +   D F  T 
Sbjct: 360 DPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQCEYVQPVDMFCQTI 419

Query: 355 HMECGVLLVR 364
            +EC   L +
Sbjct: 420 GLECVAKLTK 429


>gi|259501117|ref|ZP_05744019.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           DSM 13335]
 gi|302190435|ref|ZP_07266689.1| RNA methyltransferase [Lactobacillus iners AB-1]
 gi|309806175|ref|ZP_07700192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 03V1-b]
 gi|259167811|gb|EEW52306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           DSM 13335]
 gi|308167456|gb|EFO69618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 03V1-b]
          Length = 450

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 152/387 (39%), Gaps = 39/387 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             L   +YE+QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  AALAHMKYERQLEFKKKQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108
              F + + + + +  F+     I+A ++ +              I+    +R    +  
Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167
               Q    +V L       DA  +    L +        + L    +KT + L  ++Y+
Sbjct: 200 KANGQLMIVLVCLHKSFNNLDAVVQAIKSLDNVAC-----VILNHNPHKTNVILGEKEYI 254

Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
              +  +      L ++    SF Q N+     +    +   +    D+ ++ Y G G  
Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTADDVVIDAYSGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E       E       
Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL D  +      +   I+YISCNP ++ RDL +  +  + 
Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQVFQAAGYD 422

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
            + +   D FP T H+E  VLL +  S
Sbjct: 423 FDCIDPVDMFPQTPHVETIVLLSKLGS 449


>gi|307709324|ref|ZP_07645782.1| RNA methyltransferase [Streptococcus mitis SK564]
 gi|307619907|gb|EFN99025.1| RNA methyltransferase [Streptococcus mitis SK564]
          Length = 456

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 147/379 (38%), Gaps = 40/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +QL  K  +++  +              +    P+ YR +A+  +      L    F 
Sbjct: 88  YPEQLKFKTKQVKDSLYKIAGIADVGVAETLGMENPVKYRNKAQVPVRRVNGVLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQ 113
           + + + M ++ F     +I+ +++ +   +R              L+R  + +  + + Q
Sbjct: 148 KNSHDLMPLEDFFIQDPVIDEVVVGLRDLLRRYDLKPYDEKEQSGLIRNLVVRRGHYSGQ 207

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +VT    +     L +   +    +   +     Q        +      +D++ +
Sbjct: 208 IMVILVTTRPKVFRVDQLIEQLIKQFPEIVSVMQNINDQNTNAIFGKEWSTLYGQDFITD 267

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
           ++        Y+    +F Q N  +   + +  +   +  + D+ ++ Y G G   L +A
Sbjct: 268 QMLGND----YQIAGPAFYQVNTEMAEKLYQTAIDFAELKEDDVVIDAYSGIGTIGLSVA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +H   V  VE+   +VE ++ N   NH++N   V  +++   +   +E            
Sbjct: 324 KHVKEVYGVEVIPEAVENSKKNAQLNHISNAHYVCDTAENAMKNWLKE------------ 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GL ++ +          I YISCN  ++ RD+ +     + ++++ 
Sbjct: 372 GIQPSLILVDPPRKGLIESFIKASTQTGADRIAYISCNVATMARDIKLYQELGYELKKVQ 431

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL R
Sbjct: 432 PVDLFPQTHHVEAVSLLFR 450


>gi|300854061|ref|YP_003779045.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
           ljungdahlii DSM 13528]
 gi|300434176|gb|ADK13943.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
           ljungdahlii DSM 13528]
          Length = 450

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 152/391 (38%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW---HD 54
             T     Y++QL  K  ++  +     + + +        E   YR + EF        
Sbjct: 79  GCTSQFIPYDKQLELKEKQVLDLFEKASICDFEFLGIEKSPEKTGYRNKMEFSFGDEQRG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS---LLINALMIEMMATIRL--------EPLLRAK 103
           G     +    ++   + +D          LI   ++       L        E  LR  
Sbjct: 139 GQLTLGMHIKGRSFGVVNVDNCNLVDADFTLILDKVVTYFREKNLPYYKIKNHEGYLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT    +   D + +          L   LH     +  + +A+ 
Sbjct: 199 VLRKGRNTGEILINIVTTSQIQFDLDGFNKLLQVLNYKGTLVGILHTVNDNLSDMVKADN 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLEL 216
            +I   RDY+ E +      L ++    SF Q N+     +   +           + +L
Sbjct: 259 VEILYGRDYIMEEIL----GLKFKISPESFFQTNSRGTEKLYAMIKDFLGDASSKTVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    VL+   ++V+ VE+ + +V +A  N   N++ N + +    K+        
Sbjct: 315 YCGTGTIGQVLSSSVNKVIGVELIEKAVASANENAKLNNIKNCRFIAGDVKDV------- 367

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
              N L+D      +   I +DPPR G+    +  V  +  P I+Y+SCNP +L +DL++
Sbjct: 368 --LNTLED------KPDIIILDPPRPGVHPKALKYVIDFNAPEIIYVSCNPKTLVQDLNV 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + ++++ L D FP+T H+E  V L +
Sbjct: 420 LIDAGYNVDKVKLMDMFPHTPHVETVVKLSK 450


>gi|227891765|ref|ZP_04009570.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC
           11741]
 gi|227866424|gb|EEJ73845.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC
           11741]
          Length = 459

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 152/381 (39%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWH-DGDDLYHI 61
           Y +QL  K D +RQ +  F+  N +       +    P  YR +A+F +    G+ +   
Sbjct: 94  YSKQLEFKTDVIRQSLEKFKPTNYENMELRPTLGMEVPYEYRNKAQFQVRKVKGNKVIAG 153

Query: 62  MFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLE--------PLLRAKLFQIDYL 110
           ++   +   + +  F   MP ++ I   +++++    +          +L+  + +    
Sbjct: 154 LYKPNSHILVDLPTFKTQMPLTMEIMRKIVKLLEKWNISIYDERRNSGILKTVVIRQ--- 210

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---V 167
           T +++Q  V  +  R       +    +  A       +Q I  +  + +  +  +    
Sbjct: 211 TLKTEQVQVVFVTARNNCANLNQVVNEIMSAYPQIVSVMQNINPSRSSLVWGEETFKLAG 270

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            +RL      + +     SF Q N      +   V  A    + + L++ YCG G   L 
Sbjct: 271 TDRLLEQLGDIKFELSARSFFQLNPSQTEVLYTEVKKALDLKEDETLVDAYCGVGTIGLF 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           ++     V  ++I   ++E A+ N   +   N+      +++      +           
Sbjct: 331 VSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNIHYEVGKAEDLFAKWTK----------- 379

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344
            +++    + VDPPR+GLDD  +  +  Y     +Y+SCNP +L RDL  L   + +E +
Sbjct: 380 -NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLARDLVKLVKIYNVEYI 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP T  +E  V L +K
Sbjct: 439 QSVDMFPQTARVEAVVKLSKK 459


>gi|301301048|ref|ZP_07207208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851318|gb|EFK79042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 459

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 152/381 (39%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWH-DGDDLYHI 61
           Y +QL  K D +RQ +  F+  N +       +    P  YR +A+F +    G+ +   
Sbjct: 94  YSKQLEFKTDVIRQSLEKFKPTNYENMELRPTLGMEVPYEYRNKAQFQVRKVKGNKVIAG 153

Query: 62  MFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLE--------PLLRAKLFQIDYL 110
           ++   +   + +  F   MP ++ I   +++++    +          +L+  + +    
Sbjct: 154 LYKPNSHILVDLPTFKTQMPLTMEIMRKIVKLLEKWNISIYDERRNSGILKTVVIRQ--- 210

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---V 167
           T +++Q  V  +  R       +    +  A       +Q I  +  + +  +  +    
Sbjct: 211 TLKTEQVQVVFVTARNNCANLNQVVNEIMSAYPQIVSVMQNINPSRSSLVWGEETFKLAG 270

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            +RL      + +     SF Q N      +   V  A    + + L++ YCG G   L 
Sbjct: 271 TDRLLEQLGDIKFELSARSFFQLNPSQTEVLYTEVKKALDLKEDETLVDAYCGVGTIGLF 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           ++     V  ++I   ++E A+ N   +   N+      +++      +           
Sbjct: 331 VSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNIHYEVGKAEDLFAKWTK----------- 379

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344
            +++    + VDPPR+GLDD  +  +  Y     +Y+SCNP +L RDL  L   + +E +
Sbjct: 380 -NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLARDLVKLVKIYNVEYI 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP T  +E  V L +K
Sbjct: 439 QSVDMFPQTARVEAVVKLSKK 459


>gi|327474491|gb|EGF19896.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK408]
          Length = 456

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 147/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKY 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            D++   ++ Q +   + +   +    +   ++ ++   +    L          +R  +
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYKLPIYDERKTAGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            +    T Q     VT          R L   + E      +   ++  +I      +KT
Sbjct: 201 IRRSRKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTAEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVHYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L ++ S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|315221991|ref|ZP_07863902.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus F0211]
 gi|315188957|gb|EFU22661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           anginosus F0211]
          Length = 452

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 146/390 (37%), Gaps = 46/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F             I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKADLLRQALKKFAPQGYKNYEIRPTIGMQEPQYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL----LINALMIEM------MATIRLEPLLRAKL 104
             D+   ++ Q +   + +   +        +IN + + +      +   R    +R  +
Sbjct: 141 KGDVKAGLYAQNSHYLISLKNCLVQDKVTQKIINKVALLLGKYNFPIYDERKNAGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIYH------RLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            +    T Q     VT          R L   + E      +    +  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGKKLDFSPVIRDLTAEFPELETVAVNYHTTKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I   ++ + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGKETIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYNEAVKALDVDSEDCLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++       +E 
Sbjct: 313 CGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKKMGFDNAYYEAGTAESIIPRWYKE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLD+  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDEKLLETIVRYAPKKMVYVSCNVSTLARDLVQL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + +  +   D FP+T   E  V LV+K
Sbjct: 421 SKVYDVHYIQSVDMFPHTARTEAVVKLVKK 450


>gi|325696391|gb|EGD38282.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK160]
          Length = 456

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 148/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKY 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI----------RLEPLLRAKL 104
            D++   ++ Q +   + +   +    +   ++ ++   +          R    +R  +
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKNAGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVT------LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            +    T Q     VT       +  R L   + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSLVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
           +I      + E +        +     +F Q N      + E  + A    + D L++ Y
Sbjct: 257 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYEEAVKALDVTKEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L +K S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452


>gi|312868954|ref|ZP_07729134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
           PB013-T2-3]
 gi|311095518|gb|EFQ53782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
           PB013-T2-3]
          Length = 497

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 134/381 (35%), Gaps = 41/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y QQLA K   +   +  FQ            I   E  HYR +A+F +      +   +
Sbjct: 132 YPQQLAFKRQVVLDSLAKFQPYGYRNYDVRRTIVAPEEYHYRNKAQFQVRMVDGHVAAGL 191

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   + + + +                   LI  L I +        +++  + +  + T
Sbjct: 192 YKPNSHDLVDMQECAVQMPRTMKVVRTVVQLIEDLQIPVYEEDHNSGIIKTIVVRESWTT 251

Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
            +    ++T    LI+ R L +A  +    +   +         +    +      ++ +
Sbjct: 252 GKLQLTLITNTPKLIHKRPLLEAIAQQLPEVVSVMQNVNPGDTPLVWGEQMIHLAGKETI 311

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLV 226
            E L      L +     SF Q N      + E V  A     +  L++ Y G G   L 
Sbjct: 312 TESLM----GLDFELSARSFLQLNPEQTEALYEQVAEALELAPEDTLIDAYAGIGTIGLS 367

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +E+   +V  A  N   N + N +     ++E       E          
Sbjct: 368 LASRVKAVRGMEVIPEAVADANANAKLNGITNTQYEVGKAEELMPRWLDE---------- 417

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERL 344
               +F  + VDPPR+GLDD  +  +         Y+SC   SL R+L  L++ + ++ +
Sbjct: 418 --GLQFDALVVDPPRTGLDDELIKQILRVKPRKFAYVSCGMASLARNLRRLTSVYHVDYI 475

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D  P T   E  V L  +
Sbjct: 476 QPIDMMPQTARCEAVVKLSLR 496


>gi|329920434|ref|ZP_08277166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 1401G]
 gi|328936110|gb|EGG32563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 1401G]
          Length = 448

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 151/384 (39%), Gaps = 39/384 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             L   +YE+QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108
              F + + + + +  F+     I+A ++ +              I+    +R    +  
Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167
               Q    +V L       DA  +    L +        + L    +KT + L  ++Y+
Sbjct: 200 KANGQLMIVLVCLHKSFKNLDAVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254

Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
              +  +      L ++    SF Q N+     +    +   +    D+ ++ Y G G  
Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTANDVVIDAYSGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +VL VEI + +V+ A+ N   N VNN +     ++E       E       
Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQWANE------- 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL D  +      +   I+YISCNP ++ RDL I  +  + 
Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQIFQAAGYD 422

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
            + +   D FP T H+E  VL+ R
Sbjct: 423 FDCIDPVDMFPQTPHVESVVLMSR 446


>gi|325687161|gb|EGD29184.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK72]
          Length = 456

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 149/392 (38%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   ++ +   ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVTEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYAEAVKALDVTKEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   +   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYSPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L ++ S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452


>gi|332358268|gb|EGJ36096.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 463

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 150/392 (38%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   ++ +   ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGGGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           S  + +  +   D FP+T   E  V L +K S
Sbjct: 421 SRVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452


>gi|154496435|ref|ZP_02035131.1| hypothetical protein BACCAP_00727 [Bacteroides capillosus ATCC
           29799]
 gi|150274518|gb|EDN01595.1| hypothetical protein BACCAP_00727 [Bacteroides capillosus ATCC
           29799]
          Length = 454

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 144/385 (37%), Gaps = 38/385 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
                   Y ++L  K  R+   +      ++ +       +   YR + +F +    + 
Sbjct: 84  GCQFRQMNYAEELEAKRIRVEDCLQRIAGLDVTVPVIHGAKDTRRYRNKVQFPVQPGPEG 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYL 110
                + Q+T + + ++  +        L    ++ +         E   R  +  +   
Sbjct: 144 PRVGFYRQRTHQVISVEDCLLQPETAARLRAAAVSWMQWHNISAYDEKTGRGLVRHVYVR 203

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-------RKYQIQLIGRANKTKICLD 163
            +++ Q++V L+ +             LR+              +   +   +  +    
Sbjct: 204 VNRAGQSLVCLLVNGKSVPQEDALVQALRNVEPGLVGVVLGVNEKKNNVILGDSYRTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222
           +D++++ L        +R    SF Q NA     +    L  A    +  +L+LYCG G 
Sbjct: 264 QDWLEDTLC----GFTFRLSVPSFYQVNANQAEVLYGRALDFAGLTGRETVLDLYCGIGT 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SLV+AR   +V   E+   +VE AR N   N VNN + +                    
Sbjct: 320 ISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGD------------AGEAA 367

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
           + +     +   + VDPPR GL +  V  +   A   ++Y+SC+P +L RD+    S  +
Sbjct: 368 RALAARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRFVSLGY 427

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            + +    D FP T H+E  VLL R
Sbjct: 428 VLRKAEAVDMFPRTAHVESVVLLTR 452


>gi|322391561|ref|ZP_08065030.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
           700780]
 gi|321145644|gb|EFX41036.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
           700780]
          Length = 455

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 144/388 (37%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   +P +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQKPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
              +   ++ Q +   + +   +       A+   +   +    +          +R  +
Sbjct: 141 KGQVKAGLYAQNSHYLVELKDCLVQDKETQAIANRIAELLTYHQIPITDERKILGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   + + D  ++    +  A++    +   I   +KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQFVTDLVKDYPEVVTIAVNTNTAKTSEI-YGDKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             +D + E +        +     +F Q N      +  E V A        L++ YCG 
Sbjct: 260 WGQDSIGEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVNENDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N       N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKENAKRMGYTNTHYEVGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTIVKYAPEKMVYVSCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366
           + +  +   D FP+T   E  V L R+ 
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLTRRK 451


>gi|322377743|ref|ZP_08052233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M334]
 gi|321281508|gb|EFX58518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M334]
          Length = 456

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 144/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTFHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVTLIY---HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT       +L+ D  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNCQLNLTQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
                + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGEKSIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      S++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGSAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + I  +   D FP+T   E  V L++K
Sbjct: 424 YDIHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|149004435|ref|ZP_01829170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP14-BS69]
 gi|147757625|gb|EDK64644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP14-BS69]
          Length = 455

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|222055490|ref|YP_002537852.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32]
 gi|221564779|gb|ACM20751.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32]
          Length = 468

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 88/388 (22%), Positives = 157/388 (40%), Gaps = 38/388 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSE-PIHYRMRAEFHIWHDGD 56
              LL  +Y  QLA K   + + +   +        ++  S   +HYR  A+  +     
Sbjct: 96  GCALLKMKYPAQLAWKKQLVIKFIRRHKTLEKARLHEVIPSPHQLHYRNSAKLVVSGKFA 155

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLF 105
           D    ++ + + E + +        LI+ ++  + A I+              LLR  + 
Sbjct: 156 DPVIGIYRRNSHEVLDVAGCAVHHPLIDTIIEAVKAGIKKGKVPIYNPKSQMGLLRYLVI 215

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +I   +  +++A+V  +      +     A  L++A+       Q I  +    I   +D
Sbjct: 216 RI---SESANKAMVIFVTAERSYNELHHLAKHLKNAVPEVSVIAQNINSSLGNVILGQKD 272

Query: 166 YV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
           +    ++ L+       +     SF Q N+G    + E V         + +L+LYCG G
Sbjct: 273 HFVTKEQVLSAIMGDTKFLISPRSFFQVNSGSARIIYEKVREWAALTGSERVLDLYCGIG 332

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LAR    V  +E    +V  A  N   N + N + +     +  + MRRE +   
Sbjct: 333 GISLFLARQCKEVTGIEAVDAAVADAERNAQLNGIGNCRFIAGDVAKLIEEMRREDK--- 389

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-T 338
                    +   I ++PPR G D+  +    A     I+Y+SC+PD+L RDL++L+   
Sbjct: 390 ---------KVDLIVLNPPRKGCDEQVLKQASALGPAKIIYVSCSPDTLARDLNLLAGLD 440

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366
           +    +   D FP T H+E   LL +K 
Sbjct: 441 YETREIQPVDMFPQTPHVENVALLTKKN 468


>gi|332199324|gb|EGJ13401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA47368]
 gi|332199924|gb|EGJ13998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA47901]
          Length = 458

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|168492125|ref|ZP_02716268.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC0288-04]
 gi|183573724|gb|EDT94252.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC0288-04]
          Length = 451

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRSKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|256848539|ref|ZP_05553980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256714591|gb|EEU29571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 474

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 135/379 (35%), Gaps = 41/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K   + + +  F+            I   +   YR +A+F I      +   +
Sbjct: 109 YPAQLRFKRQMVIESLAKFKPRGYRHYEVRPTIGSEKQYGYRNKAQFQIRQQNGKVVAGL 168

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   + E + +                    I  L I +        +L+  + +    +
Sbjct: 169 YRSGSHEVVDMQECAVQMPGIMRVMRALVDKIAQLKIPLYDESNHSGILKTIVVRE---S 225

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---- 167
           + + Q  VT I +        +    + + L +    +Q I   + T +    + +    
Sbjct: 226 ATTHQIQVTFITNSPKLLKKHQLLTFIAEKLPSVVSVMQNINPGD-TPLVWGTETIHLAG 284

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           D  +T +   L +     SF Q N      + E    A +    D L++ Y G G   L 
Sbjct: 285 DSYITDSLMGLDFHLSARSFLQLNPYQTETLYEEAAKAMELTSTDTLIDAYAGIGTIGLA 344

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +EI   +V  A  N   N++ N K    S++E     R E          
Sbjct: 345 LASRVHEVRGMEIIPEAVADANQNATLNNITNAKYETGSAEELLPKWRAE---------- 394

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344
                F  + VDPPR+GLD+  +  +         YISCN  SL R+L+ L  T+ ++ +
Sbjct: 395 --GLHFDALVVDPPRTGLDNKLIQQILQEKPTKFAYISCNMASLARNLARLVPTYRVDYI 452

Query: 345 ALFDQFPYTRHMECGVLLV 363
              D  P T   E  V L 
Sbjct: 453 QPIDMMPQTARCEAVVKLS 471


>gi|90961349|ref|YP_535265.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|90820543|gb|ABD99182.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
           UCC118]
          Length = 459

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 151/381 (39%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWH-DGDDLYHI 61
           Y +QL  K D +RQ +  F+  N +       +    P  YR +A+F +    G+ +   
Sbjct: 94  YSKQLEFKTDVIRQSLEKFKPTNYENMELRPTLGMEVPYEYRNKAQFQVRKVKGNKVIAG 153

Query: 62  MFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLE--------PLLRAKLFQIDYL 110
           ++   +   + +  F   MP ++ I   +++++    +          +L+  + +    
Sbjct: 154 LYKPNSHILVDLPTFKTQMPLTMEIMRKIVKLLEKWNISIYDERRNSGILKTVVIRQ--- 210

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---V 167
           T +++Q  +  +  R       +    +  A       +Q I  +  + +  +  +    
Sbjct: 211 TLKTEQVQIVFVTARNNCANLNQVVNEIMAAYPQIVSVMQNINPSRSSLVWGEETFKLAG 270

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            +RL      + +     SF Q N      +   V  A    + + L++ YCG G   L 
Sbjct: 271 TDRLLEQLGDIKFELSARSFFQLNPSQTEVLYTEVKKALDLKEDETLVDAYCGVGTIGLF 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           ++     V  ++I   ++E A+ N   +   N+      +++      +           
Sbjct: 331 VSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNIHYEVGKAEDLFAKWTK----------- 379

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344
            + +    + VDPPR+GLDD  +  +  Y     +Y+SCNP +L RDL  L   + +E +
Sbjct: 380 -NDFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLARDLVKLVKIYNVEYI 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP T  +E  V L +K
Sbjct: 439 QSVDMFPQTARVEAVVKLSKK 459


>gi|148998432|ref|ZP_01825873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP11-BS70]
 gi|147755625|gb|EDK62671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP11-BS70]
          Length = 451

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|281491671|ref|YP_003353651.1| 23S rRNA m(5)U 1939 methyltransferase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375389|gb|ADA64902.1| 23S rRNA m(5)U 1939 methyltransferase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 460

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 142/380 (37%), Gaps = 33/380 (8%)

Query: 7   IDQYEQQLAEK----VDRLRQMMLAFQVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHI 61
              Y++Q+  K    VD LR+       P L +  + + I+YR +A+  +      L   
Sbjct: 93  HLSYDEQVKFKHKQVVDILRKTAGKSDYPVLPVVEAIKTINYRNKAQIPVQMVDGLLTTG 152

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTS-Q 113
            + + +   + ++ F      I+A+++ +             E   +  L  I    +  
Sbjct: 153 FYRKNSHTLIPVEDFYIQHPEIDAVVLFLRDEFRKINLQAYDEKTRKGWLRNIVVRRAFH 212

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV----DE 169
           + + ++TL+          E  I            +QL   +      L ++++     +
Sbjct: 213 TGEMMITLVVTSKKLPEKVELVIDHLVERFTNIKSVQLNINSGTGSFILGKEFILLYGKD 272

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +T       Y+    +F Q N      + E          GD+ ++ Y G G   + +A
Sbjct: 273 FITDLMLDKTYQISAPAFYQVNTPQAEKLYETAYEFAGLKPGDVVIDAYSGIGTIGISMA 332

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               +V  +E+   +VE A+ N   N + N      ++++       E            
Sbjct: 333 DRVAKVYGMEVVLAAVENAKRNAQLNELENTHYEVGAAEKIMPKWLSE------------ 380

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHTIERLA 345
             +   IFVDPPR GLD+  +          I+YISCNP +  RD+       + ++++ 
Sbjct: 381 GIKPDVIFVDPPRKGLDEGFIKAAAMMNPRRIVYISCNPATFARDVVRFEAEGYLLDKVQ 440

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP T H+E      +K
Sbjct: 441 PVDLFPQTHHIELVASFNKK 460


>gi|332367359|gb|EGJ45092.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 456

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 148/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKY 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            D++   ++ Q +   + +   +    +   ++ ++   +    L          +R  +
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYKLPIYDERKTAGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            +    T Q     VT          R L   + E      +   ++  +I      +KT
Sbjct: 201 IRRSRKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G+     A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L ++ S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|327462889|gb|EGF09210.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1]
          Length = 456

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 150/392 (38%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   I   +  ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
              + ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRSRKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G+     A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L ++ S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|324993619|gb|EGC25538.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK405]
 gi|324995069|gb|EGC26982.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK678]
 gi|327490048|gb|EGF21836.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1058]
          Length = 456

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 150/392 (38%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   I   +  ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
              + ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRSRKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G+     A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGSIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVRYAPKKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L ++ S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|160893946|ref|ZP_02074725.1| hypothetical protein CLOL250_01501 [Clostridium sp. L2-50]
 gi|156864324|gb|EDO57755.1| hypothetical protein CLOL250_01501 [Clostridium sp. L2-50]
          Length = 402

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 149/380 (39%), Gaps = 38/380 (10%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMR--AEFHIWHDGDDLYHIMF 63
             ++Y + L +K   + +++  F   +  +    P +YR +  AEF        +    +
Sbjct: 34  TDEEYRRLLVKKQAEMEKLLSGFAPVDPIVGMENPYYYRNKVCAEFR-KLKNGTIISGRY 92

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLFQIDYLTS 112
            + T   +            +A++ ++                   L+R  L +  + T 
Sbjct: 93  QEGTHNVIETKGCKIEDQRADAIIQDITGLFRSFKMMIYNEDSGYGLIRHVLIRTAHQTG 152

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL----IGRANKTKICLDRDYVD 168
           Q    IVT          +    ++L   +      I +    +   ++ ++   + Y++
Sbjct: 153 QIMVIIVTASPVFPSKKNFANALLKLHPEITTIVQNINIKDTNMVLGDRNQVIYGKGYIE 212

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVL 227
           + L        +R    SF Q N+     +    +  A    +  +++ YCG G   +V 
Sbjct: 213 DVLCGK----RFRLSPGSFYQINSVQTEKLYNKAIKYADLKKKETVIDAYCGIGTIGIVA 268

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           +    RV+ VE+   ++  A+ N   N + N++     +  F            L D D 
Sbjct: 269 SDRAKRVIGVELNAEAIRDAKINSRMNKIENIEFYANDAGRFMV---------ELADADE 319

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERL 344
           H      +F+DPPRSG  +  +  V   +   ++YISC PD+L RDL  L+T  + + ++
Sbjct: 320 H---IDVVFMDPPRSGSTEEFLSSVVTLSPRKVVYISCGPDTLARDLKYLTTHGYQVLKI 376

Query: 345 ALFDQFPYTRHMECGVLLVR 364
             FD FP+T H E   LL R
Sbjct: 377 TPFDLFPFTEHTEVVTLLTR 396


>gi|15901728|ref|NP_346332.1| RNA methyltransferase [Streptococcus pneumoniae TIGR4]
 gi|111656930|ref|ZP_01407750.1| hypothetical protein SpneT_02001826 [Streptococcus pneumoniae
           TIGR4]
 gi|14973406|gb|AAK75972.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae TIGR4]
          Length = 436

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 66  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 125

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 126 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 185

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 186 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 244

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 245 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 300

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 301 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 356

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 357 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 408

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 409 YDLHYIQSVDMFPHTARTEAVVKLIKK 435


>gi|304316338|ref|YP_003851483.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777840|gb|ADL68399.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 450

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 159/390 (40%), Gaps = 46/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
               L   YE QL  K D +++++    + + +    +   +   YR + E+    D + 
Sbjct: 79  GCAYLNINYEDQLKLKEDYVKKLLDEAGIKDFEFLGIVRSPDAFLYRNKMEYTFGKDDNG 138

Query: 58  LYHI-------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKL 104
           +  +        +D  T E  RI      + L N L       +        E  LR  +
Sbjct: 139 ISQLGLHVKGRFYDIVTTEDCRIVDSDFITCLKNVLRYVEEHGLPHYNIKTHEGYLRHLV 198

Query: 105 FQIDYLTSQSDQAIVTLIYHR----LLDDAWRECAI--RLRDALHARKYQIQLIGRANKT 158
            +    T +    +VT    +     L D  R   +  +L   LH          +  K 
Sbjct: 199 VRKAANTGEVIINVVTTSQIKHDFSKLVDELRSIKLNGKLIGILHTVNDSYSDAVKCEKL 258

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELY 217
            +   RDY+ + +      L ++    SF Q N+     +          I   +L +LY
Sbjct: 259 TVLYGRDYIMDEIL----GLKFKISAFSFFQTNSKGAEKLYSIAREFAGEISNKILFDLY 314

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   +++A    +V+ VE+ + +V+AAR N   N ++N++ +               
Sbjct: 315 CGTGTIGIIMAPLAKKVIGVELVEEAVDAARENARLNGLSNIQFIAGDVA---------- 364

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP-HILYISCNPDSLCRDLSIL 335
                + I   + +   + +DPPR G++  A + +++  P  I+Y+SCNP SL RDL + 
Sbjct: 365 -----QKIKEINEKPDVVVLDPPRPGVNPKAILDIIKLNPEKIIYVSCNPVSLTRDLKMF 419

Query: 336 STT-HTIERLALFDQFPYTRHMECGVLLVR 364
           +   + +E++   D FP+T H+EC  L+ R
Sbjct: 420 NERQYKVEKVKCVDMFPHTPHVECVTLMSR 449


>gi|324991264|gb|EGC23197.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK353]
          Length = 456

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 149/392 (38%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTQKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   ++ +   ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLD+  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDNKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L +K S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452


>gi|227511681|ref|ZP_03941730.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC
           11577]
 gi|227085071|gb|EEI20383.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri ATCC
           11577]
          Length = 472

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 144/381 (37%), Gaps = 41/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D ++  +  ++            I   +P HYR +A F I +DG  +   +
Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPTHYRNKATFQIRNDGQKVIAGL 167

Query: 63  FDQQTKERMR-----------IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +  ++   +            +        +I+ L I +    +   +++  + +     
Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVR---AA 224

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--- 168
           + +D+A VT I          +   R+   L      +Q +    KT +    + +    
Sbjct: 225 TATDEAQVTFITQSKKLLKKHQLLERIDHDLPEVVSVMQNVNPG-KTSLVWGEETIHLAG 283

Query: 169 -ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLV 226
            +++T     L +     +F Q N  +   + +    A     +  L++ Y G G   L 
Sbjct: 284 KDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAYSGVGTIGLS 343

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +AR    V  ++  K +V+ A  N   N + N       +++       +          
Sbjct: 344 VARQVREVRGMDTIKDAVDDANANAIKNGIVNALYEVGEAEKLLPLWIED---------- 393

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERL 344
              +    + VDPPR+GL D+ +  +        +YISCNP +L RDL  L+  + +E +
Sbjct: 394 --GWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVKLTRKYNVEYI 451

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D  P T   EC V   +K
Sbjct: 452 QSVDLMPQTSRCECVVKFKKK 472


>gi|221232637|ref|YP_002511791.1| RNA methyltransferase [Streptococcus pneumoniae ATCC 700669]
 gi|307128099|ref|YP_003880130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 670-6B]
 gi|220675099|emb|CAR69679.1| putative RNA methyltransferase [Streptococcus pneumoniae ATCC
           700669]
 gi|301794862|emb|CBW37321.1| putative RNA methyltransferase [Streptococcus pneumoniae INV104]
 gi|301800678|emb|CBW33323.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
 gi|301802595|emb|CBW35356.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
 gi|306485161|gb|ADM92030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 670-6B]
          Length = 447

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 77  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 136

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 137 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 196

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 197 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 255

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 256 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 311

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 312 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 367

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 368 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 419

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 420 YDLHYIQSVDMFPHTARTEAVVKLIKK 446


>gi|15903759|ref|NP_359309.1| hypothetical protein spr1717 [Streptococcus pneumoniae R6]
 gi|116516423|ref|YP_817130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae D39]
 gi|148993227|ref|ZP_01822793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP9-BS68]
 gi|149007378|ref|ZP_01831021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP18-BS74]
 gi|149023453|ref|ZP_01836042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP23-BS72]
 gi|168484910|ref|ZP_02709855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1873-00]
 gi|168576690|ref|ZP_02722556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae MLV-016]
 gi|225855340|ref|YP_002736852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae JJA]
 gi|237650428|ref|ZP_04524680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822275|ref|ZP_04598120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|307068518|ref|YP_003877484.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|50401572|sp|Q8DNH6|Y1717_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr1717
 gi|50401780|sp|Q97NV8|Y1901_STRPN RecName: Full=Uncharacterized RNA methyltransferase SP_1901
 gi|15459395|gb|AAL00520.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076999|gb|ABJ54719.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae D39]
 gi|147760950|gb|EDK67919.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP18-BS74]
 gi|147928201|gb|EDK79219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP9-BS68]
 gi|147929776|gb|EDK80766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP23-BS72]
 gi|172041937|gb|EDT49983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1873-00]
 gi|183577662|gb|EDT98190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae MLV-016]
 gi|225723744|gb|ACO19597.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae JJA]
 gi|306410055|gb|ADM85482.1| SAM-dependent methyltransferase [Streptococcus pneumoniae AP200]
 gi|332072242|gb|EGI82726.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA41301]
          Length = 451

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|148985480|ref|ZP_01818669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922200|gb|EDK73321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP3-BS71]
          Length = 463

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|168494763|ref|ZP_02718906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC3059-06]
 gi|183575365|gb|EDT95893.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC3059-06]
          Length = 458

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|194398750|ref|YP_002038492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae G54]
 gi|194358417|gb|ACF56865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae G54]
          Length = 451

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVSKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|182684846|ref|YP_001836592.1| RNA methyltransferase [Streptococcus pneumoniae CGSP14]
 gi|225857490|ref|YP_002739001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae P1031]
 gi|303253868|ref|ZP_07339992.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
 gi|303260797|ref|ZP_07346751.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|303267661|ref|ZP_07353494.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS457]
 gi|182630180|gb|ACB91128.1| RNA methyltransferase, TrmA family [Streptococcus pneumoniae
           CGSP14]
 gi|225725197|gb|ACO21049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae P1031]
 gi|302599173|gb|EFL66195.1| RNA methyltransferase [Streptococcus pneumoniae BS455]
 gi|302638058|gb|EFL68539.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP-BS293]
 gi|302642802|gb|EFL73116.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS457]
          Length = 451

 Score =  256 bits (653), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKENHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|225861693|ref|YP_002743202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229216|ref|ZP_06962897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255172|ref|ZP_06978758.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298503634|ref|YP_003725574.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727633|gb|ACO23484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298239229|gb|ADI70360.1| tRNA (uracil-5-)-methyltransferase [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 451

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + +DPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIIDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|125718628|ref|YP_001035761.1| RNA methyltransferase [Streptococcus sanguinis SK36]
 gi|125498545|gb|ABN45211.1| RNA methyltransferase, putative [Streptococcus sanguinis SK36]
          Length = 456

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 148/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   ++ +   ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I      + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L ++ S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452


>gi|332071986|gb|EGI82473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA17570]
          Length = 462

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|168490112|ref|ZP_02714311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP195]
 gi|183571510|gb|EDT92038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP195]
          Length = 451

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|149012517|ref|ZP_01833548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP19-BS75]
 gi|147763573|gb|EDK70509.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP19-BS75]
          Length = 453

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKEGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +  +   D FP+T   E  V L++K
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|262282787|ref|ZP_06060555.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           2_1_36FAA]
 gi|262262078|gb|EEY80776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           2_1_36FAA]
          Length = 454

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 149/392 (38%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 79  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   ++ +   ++   RL      K   +  + 
Sbjct: 139 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 198

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 199 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETIAVNYHTSKSSEI----YGDKT 254

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I      + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 255 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 310

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 311 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYTE- 369

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       +R   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 370 -----------GFRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 418

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           S  + +  +   D FP+T   E  V L ++ S
Sbjct: 419 SQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 450


>gi|300214218|gb|ADJ78634.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus salivarius CECT
           5713]
          Length = 459

 Score =  255 bits (652), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 152/381 (39%), Gaps = 40/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWH-DGDDLYHI 61
           Y +QL  K D +RQ +  F+  N +       +    P  YR +A+F +    G+ +   
Sbjct: 94  YSKQLEFKTDVIRQSLEKFKPTNYENMELRPTLGMEVPYEYRNKAQFPVRKVKGNKVIAG 153

Query: 62  MFDQQTKERMRIDYF---MPGSLLINALMIEMMATIRLE--------PLLRAKLFQIDYL 110
           ++   +   + +  F   +P ++ I   +++++    +          +L+  + +    
Sbjct: 154 LYKPNSHILVDLPTFKTQIPLTMEIMRKIVKLLEKWNISIYDERRNSGILKTVVIRQ--- 210

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---V 167
           T +++Q  +  +  R       +    +  A       +Q I  +  + +  +  +    
Sbjct: 211 TLKTEQVQIVFVTARNNCANLNQVVNEIMAAYPQIVSVMQNINPSRSSLVWGEETFKLAG 270

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            +RL      + +     SF Q N      +   V  A    + + L++ YCG G   L 
Sbjct: 271 TDRLLEQLGDIKFELSARSFFQLNPSQTEVLYTEVKKALDLKEDETLVDAYCGVGTIGLF 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           ++     V  ++I   ++E A+ N   +   N+      +++      +           
Sbjct: 331 VSPDAKEVRGMDIIPEAIEDAKKNAELSGRKNIHYEVGKAEDLFAKWTK----------- 379

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344
            +++    + VDPPR+GLDD  +  +  Y     +Y+SCNP +L RDL  L   + +E +
Sbjct: 380 -NNFVPDALVVDPPRTGLDDKMIETILKYRPNKFVYVSCNPSTLARDLVKLVKIYNVEYI 438

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP T  +E  V L +K
Sbjct: 439 QSVDMFPQTARVEAVVKLSKK 459


>gi|256846121|ref|ZP_05551579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_36A2]
 gi|256719680|gb|EEU33235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Fusobacterium sp.
           3_1_36A2]
          Length = 462

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 162/384 (42%), Gaps = 33/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M     +P++Q+       +  +YR +         +
Sbjct: 92  GCDFAMLKYESQLKYKRLMVEEVMKKIAGLPDIQVADVLASEDIYNYRNKIIEPFSVYDN 151

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++ E+   +    +        +  L  I  
Sbjct: 152 KIITGFFKRKSHEVFEVDENILNSKLGNRIIKELKKILNKNKISIYNENTHKGLLRNIMI 211

Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+V LI +   + +  ++   +LR+ +   K  I +   + KT   +      
Sbjct: 212 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGEKNIL 270

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y  + +      + +     SF Q N      +    ++    I    +++ Y G G  
Sbjct: 271 IYGVKSIKENINGIEFHISPTSFFQINVKQAKRLYNIAISFFDNIDDKYIVDAYSGTGTI 330

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++A+   +V A+EI K + E        N + N++ +  + ++             + 
Sbjct: 331 GMIMAKKTKKVYAIEIVKSASEDGEKTAKENGIKNIEFINGAVEK------------EII 378

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILST-THTI 341
            +  ++ +  TI  DPPR GL+ + +  V      ++YISCNP +  RD+ + S   + +
Sbjct: 379 KLINNNQKIDTIIFDPPRKGLEASIIDTVAELNLKVVYISCNPSTFARDVKLFSERGYVL 438

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           ++L   D FP T H+EC  L+V++
Sbjct: 439 KKLQAVDMFPQTSHIECVGLIVKE 462


>gi|229830195|ref|ZP_04456264.1| hypothetical protein GCWU000342_02304 [Shuttleworthia satelles DSM
           14600]
 gi|229791493|gb|EEP27607.1| hypothetical protein GCWU000342_02304 [Shuttleworthia satelles DSM
           14600]
          Length = 394

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 150/389 (38%), Gaps = 42/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYH 60
             ++    Y++QL  K   +  ++ A+  P   +  + P +YR +A   +       +  
Sbjct: 19  GCSMQGLPYKEQLKRKEKEVADLLKAYGRPEPILGMNFPYYYRNKAHAVLGGSLKGKIVC 78

Query: 61  IMFDQQTKERMRIDYFMP----GSLLI---NALMIEMMATIRLEPLLRAKLFQI-DYLTS 112
             +++ +   + ID           LI     L+         E   R  L  I    T+
Sbjct: 79  GTYERGSHRIVNIDRCQIEDRECDQLIASVRELLPSFKVEPYNEDTGRGCLRHIIARRTA 138

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRD 165
              Q ++ L+  +    + ++    LR A       +Q I          ++ ++     
Sbjct: 139 DGGQIMLILVTAQAAFPSRKKFVSALRKAHPNITTILQNINGQSTSVVLGDRYEVLYGPG 198

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           Y+++RL        +R    +F Q N+     +    +  A    +  +L+ YCG G   
Sbjct: 199 YIEDRLM----GARFRISPGAFYQVNSQQTKKLYRLAVDMADLKGKERVLDTYCGTGTIG 254

Query: 225 LV----LARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           +     LAR       ++ VE    +V  AR N   N +   + V   +  F   M  E 
Sbjct: 255 IAAAVDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADAGAF---MLAEA 311

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335
           E  R             +F+DPPR+G  +  +  ++      I+YISC+P +  RDL  L
Sbjct: 312 EAGR---------SCDLVFMDPPRAGSTEEFLLALRRLVPEKIVYISCDPKTQARDLKYL 362

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
            + + I R+A  D FP+T  +E  VLL +
Sbjct: 363 DSAYAIRRIAPVDMFPFTDGIENVVLLEK 391


>gi|312875412|ref|ZP_07735416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2053A-b]
 gi|311089075|gb|EFQ47515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2053A-b]
          Length = 450

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 151/387 (39%), Gaps = 39/387 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             L   +YE+QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108
              F + + + + +  F+     I+A ++ +              I+    +R    +  
Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167
               Q    +V L       D   +    L +        + L    +KT + L  ++Y+
Sbjct: 200 KANGQLMIVLVCLHKSFNNLDTVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254

Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
              +  +      L ++    SF Q N+     +    +   +    D+ ++ Y G G  
Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTANDVVIDAYSGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E       E       
Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL D  +      +   I+YISCNP ++ RDL +  +  + 
Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQVFQAAGYD 422

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
            + +   D FP T H+E  VLL +  S
Sbjct: 423 FDCIDPVDMFPQTPHVETIVLLSKLGS 449


>gi|227508696|ref|ZP_03938745.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191830|gb|EEI71897.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 472

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 145/381 (38%), Gaps = 41/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D ++  +  ++            I   +PIHYR +A F I +DG  +   +
Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPIHYRNKATFQIRNDGQKVIAGL 167

Query: 63  FDQQTKERMR-----------IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +  ++   +            +        +I+ L I +    +   +++  + +     
Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVR---AA 224

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--- 168
           + +D+A VT I          +   R+   L      +Q +    KT +    + +    
Sbjct: 225 TATDEAQVTFITQSKKLLKKHQLLERIDHDLPEVVSVMQNVNPG-KTSLVWGEETIHLAG 283

Query: 169 -ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLV 226
            +++T     L +     +F Q N  +   + +    A     +  L++ Y G G   L 
Sbjct: 284 KDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAYSGVGTIGLS 343

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +AR    V  ++  K +V+ A  N   N + N       +++       +          
Sbjct: 344 VARQVREVRGMDTIKDAVDDANANAIKNGIVNALYEVGEAEKLLPLWIED---------- 393

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERL 344
              +    + VDPPR+GL D+ +  +        +YISCNP +L RDL  L+  + +E +
Sbjct: 394 --GWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVKLTRKYNVEYI 451

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D  P T   EC V   +K
Sbjct: 452 QSVDLMPQTSRCECVVKFKKK 472


>gi|322807179|emb|CBZ04753.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402
           065]
          Length = 453

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 146/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55
             +     YE+QL  K ++L ++  + ++            E   YR + EF       G
Sbjct: 79  GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 138

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103
            DL   M  +      + +D                    N   +     +  E  LR  
Sbjct: 139 GDLTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT                  EC   ++  LH     +  + + +K
Sbjct: 199 VIRKAKNTGEILVNIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            +I   RDY+ E L      L ++    +F Q N+     +   V          ++ +L
Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A    +V+ VE+ + +V+AA  N   N +NN + +     +  + +++ 
Sbjct: 315 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 373

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFQPKEIIYVSCNPKTLVDDLKY 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +E++   D FP+T H EC   + R
Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHTECVTRIER 450


>gi|331001672|ref|ZP_08325195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330413393|gb|EGG92760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 394

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 150/384 (39%), Gaps = 35/384 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
               +   Y + + EK++   +++  +   +  I  S P HYR +       +   +   
Sbjct: 26  GCDYINSPYNKHVKEKLELANKLIKKYGKFDGIISMSNPYHYRNKVSAVFGFENKKIIAG 85

Query: 62  MFDQQTKERMRIDYFMP----GSLLINALM-------IEMMATIRLEPLLRAKLFQIDYL 110
            +++ +   +     +      S +I  +        I+          LR  L ++   
Sbjct: 86  TYEKNSHRVVDTKSCLIEDKKASAIIQTIKKMCISFKIKAYDEDSGFGFLRHVLIRVGK- 144

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YV 167
             +S Q +V L+   ++          LR         +Q +   N + +  DR+   Y 
Sbjct: 145 --KSGQIMVVLVTSNVIFPNKNAFIKVLRGEHPEITTIVQNVNNKNTSMVLGDREIVMYG 202

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
              +T     L ++    SF Q N      +    +    G++GD  LL+ Y G G   L
Sbjct: 203 KGYITDELCGLTFKISPKSFYQVNREQTEKLYSQAIE-YAGLEGDEVLLDAYSGIGTIGL 261

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           + ++    V++VE+ K + + A  N   N++ NVK     +  F              D+
Sbjct: 262 IASKSVKEVISVELNKDAHKDAITNAKINNIKNVKFYNADATAFIN------------DL 309

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIE 342
                +   + +DPPR+G  +  +  V       ++Y+SCNP++L RDL       +  E
Sbjct: 310 AAAGEKIDVVILDPPRTGSTEEFIAAVGRLKPKKVVYVSCNPETLARDLESFKRQRYGFE 369

Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366
           +  +FD F +TRH E  VL+ RK 
Sbjct: 370 KGMVFDCFCHTRHAEVVVLMSRKD 393


>gi|225859667|ref|YP_002741177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
 gi|225721520|gb|ACO17374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae 70585]
          Length = 451

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 138/386 (35%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +    T Q    IVT   +    L     +    +                  KT+I  
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKGFPEVVTVAVNTNTAKTSEIYGEKTEIIW 260

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNG 221
            ++ + E +        +     +F Q N      +  E V A     +  L++ YCG G
Sbjct: 261 GQESIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYSEVVKALDVSKEDHLIDAYCGVG 316

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
                 A+    +  ++I   ++E A+ N      +N      +++E      +E     
Sbjct: 317 TIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE----- 371

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH 339
                   YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   +
Sbjct: 372 -------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVY 424

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP+T   E  V L++K
Sbjct: 425 DLHYIQSVDMFPHTARTEAVVKLIKK 450


>gi|325832711|ref|ZP_08165474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
 gi|325485850|gb|EGC88311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
          Length = 525

 Score =  255 bits (651), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 137/411 (33%), Gaps = 68/411 (16%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHI-------------- 51
            Y QQLA K  R+ ++       +     +   EP  YR +                   
Sbjct: 37  PYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVVSPYAPGRKLQGSANARA 96

Query: 52  --------WHDGDDLYH-------IMFDQQTKERMRIDYFMPGSL-----------LINA 85
                     DG             M+   +   +  D  +  +            L+  
Sbjct: 97  GKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIENEEAKRIIRTVRDLMPR 156

Query: 86  LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
             IE          LR  + ++ +    S + +VTL+ +     A R     L       
Sbjct: 157 FGIEPYREDSGTGFLRHAVVRVGH---TSGEILVTLVTNGRAFPASRAFCRELVRRCPRI 213

Query: 146 KYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
              +Q +    +T + L       Y    +      L +R    SF Q NA     + E 
Sbjct: 214 TSVVQNVN-ERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSFYQVNAVQTEVLYER 272

Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +  A        ++ YCG G   LV A+    +V+ V+    +V  AR N   N V N 
Sbjct: 273 AIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKHNGVENA 332

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317
           +     +  F +            +          + +DPPR+G  +  +      A   
Sbjct: 333 RFAVGDAGAFMR------------ERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAPRR 380

Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           I+YISCNP +  RDL+ L    + +  +   D FP+T H+E   LL RK +
Sbjct: 381 IVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETVALLSRKSA 431


>gi|332362833|gb|EGJ40626.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK49]
          Length = 456

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 148/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   ++ +   ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I      + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKKMGFDNTLYEAGTAEEIIPRWYTE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L ++ S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRNS 452


>gi|327470379|gb|EGF15835.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK330]
          Length = 463

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 145/392 (36%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            D++   ++ Q +   + +   +    +   ++ ++   +    L          +R  +
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKNSGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            +    T Q     VT          R L   + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N       N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRANALIVDPPRIGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L +K S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKKDS 452


>gi|257437892|ref|ZP_05613647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii A2-165]
 gi|257199552|gb|EEU97836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii A2-165]
          Length = 374

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 142/384 (36%), Gaps = 40/384 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRA-EFHIWHDGDDLYHIMF 63
           +L   Y +QL +K   +R+++  +           P HYR +         G  L   ++
Sbjct: 1   MLGLDYAEQLKQKEAAVRKLVGKYGPVAPIRGAENPCHYRNKVISTFAAGPGGKLVSGIY 60

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTS 112
              T + + ++  +    +++ +M  + A                 LLR  L +   ++ 
Sbjct: 61  AAGTHKVLPVESCLLQDEVLDTVMQAVRAAASTCRYQPYNEDKGTGLLRHCLLRRGVVSG 120

Query: 113 QSDQAIVTL--------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           Q    +VT          + R L     +  + +   +     +   +    + K+   +
Sbjct: 121 QVMVVLVTAQPVLPGAKNFVRALLAEAEKRHVPVTTVVQNYNPRRTSVVLGEEEKVLYGK 180

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
            ++ + L        Y     SF Q N      +    + A +    ++ L+ YCG G  
Sbjct: 181 GFILDTLCGK----TYALSPRSFYQINHDQTEVLYGLAVEAARLTGKEVVLDAYCGIGTI 236

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  +    +V+ VE+ + +V  A  N   N V N +     + +             + 
Sbjct: 237 GLTASGRAKQVVGVELNRDAVRDAIGNARHNDVKNARFFAADATQ------------WIT 284

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHT 340
           +      R   IF+DPPR G     +  V   A   ++Y+SCNP+++ RDL++L +  + 
Sbjct: 285 EAAAAGQRADVIFMDPPREGSTPQFIESVARMAPKRVVYVSCNPETMARDLALLTAKGYR 344

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
            E     D FP T H E    L R
Sbjct: 345 AEGFTPVDLFPQTAHCEVVCALTR 368


>gi|332362207|gb|EGJ40007.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1056]
          Length = 456

 Score =  255 bits (651), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 147/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMHEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI----------RLEPLLRAKL 104
            D++   ++ Q +   + +   +    +   ++ ++   +          R    +R  +
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKNAGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            +    T Q     VT          R L   + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I      + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTREDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGTIGFSFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVHYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           S  + +  +   D FP+T   E  V L ++ S
Sbjct: 421 SKVYDVRYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|322385946|ref|ZP_08059586.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
           ATCC 51100]
 gi|321269929|gb|EFX52849.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
           ATCC 51100]
          Length = 452

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 149/391 (38%), Gaps = 46/391 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            D++   ++ Q +   + +   +    +  A++ ++   +    L          +R  +
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQAIVNKVARLLGKYRLPIYDERKTTGVRTVM 200

Query: 105 FQIDYLTSQSDQAIVT------LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            +    T Q     VT       +  R L   + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSLVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
              + +  +   D FP+T   E  V LV+K 
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLVKKD 451


>gi|296132411|ref|YP_003639658.1| RNA methyltransferase, TrmA family [Thermincola sp. JR]
 gi|296030989|gb|ADG81757.1| RNA methyltransferase, TrmA family [Thermincola potens JR]
          Length = 457

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 145/389 (37%), Gaps = 39/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QLA K   +   +           +  I    P  YR +A F +  D  
Sbjct: 85  GSHLQHISYSAQLAFKQKVVADAVQRIGKLGDVPVHFPIGMEMPWRYRNKAAFQVADDNG 144

Query: 57  DLYHIMFDQQTKERM----------RIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLF 105
            +    F ++T + +          +I  F      L+N   +          +LR  + 
Sbjct: 145 RIRLGFFAEETHQVVAAYDCMLLHRQISEFAAVVEMLLNKYKVPAYDWKTHRGVLRHVVI 204

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR---LRDALHARKYQIQLIGRANKTKICL 162
           +  +  ++    +VT     +   A      R   +   +             N   +  
Sbjct: 205 RRSWAHNKVMIVLVTTSEKCINLHAMARDLHRNPSVVSVVRNINDGPGRNIFGNSNVVLA 264

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            R+ ++++L      L +     SF Q N      + + V         + +L+LYCG G
Sbjct: 265 GRETIEDKLC----GLTFVISPTSFFQVNPVQTEILYQKVRQYAVETGKETVLDLYCGIG 320

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L LA+  ++V+ +E+ + +V  A  N   N + N + +   +++            R
Sbjct: 321 TIALYLAQFTEKVIGLEVHEAAVADAAANARINGIGNAEFIVGRAED------------R 368

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TT 338
           L  +     +   + VDPPR G+D   +  +       I+Y+SC+  S+ RDL+ L    
Sbjct: 369 LPKLAAQGVKADVVVVDPPRKGVDKRALQAICDIGPERIVYVSCDSASMARDLAFLRHRG 428

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           + +  +   D FP T H+EC  LL RK +
Sbjct: 429 YGVREIQPVDMFPQTHHVECVALLKRKEA 457


>gi|325913301|ref|ZP_08175669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 60-B]
 gi|325477404|gb|EGC80548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 60-B]
          Length = 448

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 151/384 (39%), Gaps = 39/384 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             L   +YE+QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108
              F + + + + +  F+     I+A ++ +              I+    +R    +  
Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167
               Q    +V L       DA  +    L +        + L    +KT + L  ++Y+
Sbjct: 200 KANGQLMIVLVCLHKSFNNLDAVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254

Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
              +  +      L ++    SF Q N+     +    +   +    D+ ++ Y G G  
Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTANDVVIDAYSGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +VL VEI + +V+ A+ N   N +NN +     ++E       E       
Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGINNAEYFEGKAEELMPQWANE------- 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL D  +      +   I+YISCNP ++ RDL +  +  + 
Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLQVFQAAGYD 422

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
            + +   D FP T H+E  VL+ +
Sbjct: 423 FDCIDPVDMFPQTPHVETIVLMSK 446


>gi|307710372|ref|ZP_07646812.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564]
 gi|307618849|gb|EFN97985.1| RNA methyltransferase, TrmA family [Streptococcus mitis SK564]
          Length = 367

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 147/383 (38%), Gaps = 40/383 (10%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDL 58
           +   Y++QL  K D L Q +  F     +       I   EP +YR + +F      + +
Sbjct: 1   MHLHYDKQLEFKTDLLYQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKFKNQV 60

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQID 108
              ++ Q +   + +   +        +   +   +    +          +R  + +  
Sbjct: 61  KAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIMVRRA 120

Query: 109 YLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
             T Q    IVT   L + +L+ D  ++    +  A++    +   I    KT+I   ++
Sbjct: 121 RKTGQVQIIIVTNCQLNFTKLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEIIWGQE 179

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFS 224
            + E +        +     +F Q N      +  E V A     +  L++ YCG G   
Sbjct: 180 SIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYNEAVKALDVNKEDHLIDAYCGVGTIG 235

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
              A+    +  ++I   ++E A+ N      +N      +++E      +E        
Sbjct: 236 FAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE-------- 287

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342
                YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   + + 
Sbjct: 288 ----GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLGRLVEVYDLH 343

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T   E  V L++K
Sbjct: 344 YIQSVDMFPHTARTEAVVKLIKK 366


>gi|291556131|emb|CBL33248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
           V10Sc8a]
          Length = 493

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 134/396 (33%), Gaps = 49/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
             +L    YE QL  K   ++         + +       +    YR + +  I  D D 
Sbjct: 79  GCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGYRNKLQIPIGTDKDG 138

Query: 58  L-YHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105
                 +   +   +  +  +               +   L +        + +LR    
Sbjct: 139 NLIAGFYAFHSHRIVPCEKCLLQPDIFSKITADFLKISTGLNLTAYDETTHKGILRHLYL 198

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +  Y + +    IV            +  + RL +        +  +     T + L   
Sbjct: 199 RKGYYSGEICLCIVVAKNV----PEIKILSDRLLEKYPEIVSSVINVNN-RDTNVILG-- 251

Query: 166 YVDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             DE + +  +  I              +F Q N      +        +     +L+LY
Sbjct: 252 --DEEIVLTSKNYICDIMCKIAVNIAPKAFYQVNTPCAEQLYSSACDFAEPKGKTVLDLY 309

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L +AR   +++ VEI   ++E A+ N  AN + N + +   + E  + +    
Sbjct: 310 CGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARILHS-- 367

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                      S R   I VDPPR G        + A+  P I+ +SCN  +  RD +  
Sbjct: 368 ----------RSLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACF 417

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLV-RKPSGW 369
           +   ++ ++    D F  T H+E  VLL  +KP G 
Sbjct: 418 AELGYSTDKCVAVDMFSGTNHVETVVLLSHKKPDGH 453


>gi|153939426|ref|YP_001392140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. Langeland]
 gi|152935322|gb|ABS40820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. Langeland]
 gi|295320145|gb|ADG00523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           F str. 230613]
          Length = 453

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 146/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIW--HDG 55
             +     YE+QL  K ++L ++  + ++            E   YR + EF       G
Sbjct: 79  GCSTQYIPYEKQLQIKEEQLLKLFKSKEIKGFDFLGVEKSPEEYEYRNKMEFTFGDMEKG 138

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAK 103
            DL   M  +      + +D                    N   +     +  E  LR  
Sbjct: 139 GDLTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTVVNYFNEKRLPKYRVMSHEGFLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT                  EC   ++  LH     +  + + +K
Sbjct: 199 VIRKAKNTGEILINIVTTSQMEFDFKEIVDMLLKVECKGEIKGILHTINDTLSDVVQVDK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            +I   RDY+ E L      L ++    +F Q N+     +   V          ++ +L
Sbjct: 259 LEILYGRDYIIEELL----GLKFKIAPEAFFQTNSKGAEKLYSIVKDFLGDASSKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A    +V+ VE+ + +V+AA  N   N +NN + +     +  + +++ 
Sbjct: 315 YCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFIAGDVAKVIKDVKQ- 373

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 374 --------------KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDLKY 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +E++   D FP+T H EC   + R
Sbjct: 420 LIDNGYKLEKVKGMDMFPHTPHTECVTRIER 450


>gi|322376104|ref|ZP_08050613.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
 gi|321278872|gb|EFX55916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
          Length = 453

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 148/387 (38%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKTLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ D  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E + A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYNEAIKALDVSKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      ++    
Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAQKMGFDNTHYEAGTAEETIPRWYQD---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLETILTYVPEKMVYVSCNVSTLARDLVKLVKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP+T   E  V LV+K
Sbjct: 424 YDLQYIQSVDMFPHTARTEAVVKLVKK 450


>gi|312870826|ref|ZP_07730932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 3008A-a]
 gi|312873060|ref|ZP_07733119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311091293|gb|EFQ49678.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311093702|gb|EFQ52040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 3008A-a]
          Length = 450

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 151/387 (39%), Gaps = 39/387 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             L   +YE+QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108
              F + + + + +  F+     I+A ++ +              I+    +R    +  
Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167
               Q    +V L       D   +    L +        + L    +KT + L  ++Y+
Sbjct: 200 KANGQLMIVLVCLHKSFNNLDTVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254

Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
              +  +      L ++    SF Q N+     +    +   +    D+ ++ Y G G  
Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTADDVVIDAYSGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +VL VEI + +V+ A+ N   N VNN +     ++E       E       
Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQWANE------- 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL D  +      +   I+YISCNP ++ RDL +  +  + 
Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLRVFQAAGYD 422

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
            + +   D FP T H+E  VLL +  S
Sbjct: 423 FDCIDPVDMFPQTPHVETIVLLSKLGS 449


>gi|309803859|ref|ZP_07697944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164093|gb|EFO66355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 11V1-d]
          Length = 450

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 151/387 (39%), Gaps = 39/387 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             L   +YE+QL  K  ++  ++      +  N  +   E   YR +A+  +      L 
Sbjct: 80  AALAHMKYERQLEFKKQQVVNLLEKVHLNKKVNDCLASPESTAYRNKAQVPVRMVNGQLE 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLFQID 108
              F + + + + +  F+     I+A ++ +              I+    +R    +  
Sbjct: 140 VGFFRKHSHDLVPMTDFLTTDKKIDAAVVAVRDILRKFNVPAYDEIKHNGEVRYLEIRRS 199

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYV 167
               Q    +V L       D   +    L +        + L    +KT + L  ++Y+
Sbjct: 200 KANGQLMIVLVCLHKSFNNLDTVVQAIQSLDNVAC-----VILNHNPHKTNVILGEKEYI 254

Query: 168 ---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
              +  +      L ++    SF Q N+     +    +   +    D+ ++ Y G G  
Sbjct: 255 LAGNGEIVDKIGDLSFKISSQSFFQINSLQTPRLYNLAIQKAQLTADDVVIDAYSGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L +A+H  +VL VEI + +V+ A+ N   N VNN +     ++E       E       
Sbjct: 315 GLSVAKHVKKVLGVEIVRDAVKDAKKNAILNGVNNAEYFEGKAEELMPQWANE------- 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  +   IFVDPPR GL D  +      +   I+YISCNP ++ RDL +  +  + 
Sbjct: 368 -----GLKTDVIFVDPPRKGLTDTFIKAAVATSPKKIVYISCNPATMIRDLRVFQAAGYD 422

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
            + +   D FP T H+E  VLL +  S
Sbjct: 423 FDCIDPVDMFPQTPHVETIVLLSKLGS 449


>gi|301060814|ref|ZP_07201628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium
           NaphS2]
 gi|300445063|gb|EFK09014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium
           NaphS2]
          Length = 466

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 153/395 (38%), Gaps = 56/395 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEF-------------H 50
           +YE+QL  K + +++ +         V    I       YR + EF              
Sbjct: 90  RYEKQLTLKREHVKEPLEHIAGLKNVVVRPLIPSENIFGYRNKMEFSFSDRRWYLPDELP 149

Query: 51  IWHDGDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLF 105
                ++    +    T  + + ++  +      N ++  +   ++   +    L++   
Sbjct: 150 FEKKDENFALGLHVPGTYHKVIDMEACLLQQQTGNDILRAVAQYVKNSNVPVYGLKSHEG 209

Query: 106 QIDYLTSQSDQA----IVTLIYHR-------LLDDAWRECAIRLRDALHARKYQIQLIGR 154
              YLT +  +A    +V L+  +        L +       R++  ++    +   I  
Sbjct: 210 YWRYLTIRHSEAFDHWMVNLVTSKNDASTLHPLAEHLCRKFPRIKTVVNNINGRKASIAV 269

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213
             K K+     ++++++        +R   NSF Q N    + + E VL        + +
Sbjct: 270 GEKEKVLTGDGFINDKIG----PFSFRVSANSFFQTNTSAALKLYEQVLRYADPKGKEQV 325

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LY G G   + L+     V  +EI++ +   A+ N   N+V+N + V    +E     
Sbjct: 326 LDLYSGTGTIPIFLSDRVRSVTGIEISESATADAKRNALVNNVHNCRFVCGDIRE----- 380

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRD 331
                      +    ++   + +DPPR+G+    +   M      I+Y+SCNP +L RD
Sbjct: 381 ----------KLGTVGFKPDIMIIDPPRAGMHKDVLAETMGINPRRIVYVSCNPATLARD 430

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           L I++  + +  +   D FP+T H+E    L R+ 
Sbjct: 431 LEIMAEAYELNEIQPVDMFPHTYHIESVAKLSRRK 465


>gi|227523883|ref|ZP_03953932.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227088903|gb|EEI24215.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus hilgardii ATCC
           8290]
          Length = 472

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 143/381 (37%), Gaps = 41/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y +QL  K D ++  +  ++            I   +P HYR +A F I  DG  +   +
Sbjct: 108 YPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPTHYRNKATFQIRSDGQKVIAGL 167

Query: 63  FDQQTKERMR-----------IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +  ++   +            +        +I+ L I +    +   +++  + +     
Sbjct: 168 YKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVR---AA 224

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--- 168
           + +D+A VT I          +   R+   L      +Q +    KT +    + +    
Sbjct: 225 TATDEAQVTFITQSKKLLKKHQLLERIDHDLPEVVSVMQNVNPG-KTSLVWGEETIHLAG 283

Query: 169 -ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLV 226
            +++T     L +     +F Q N  +   + +    A     +  L++ Y G G   L 
Sbjct: 284 KDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAYSGVGTIGLS 343

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +AR    V  ++  K +V+ A  N   N + N       +++       +          
Sbjct: 344 VARQVREVRGMDTIKDAVDDANANAIKNGIVNALYEVGEAEKLLPLWIEDV--------- 394

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERL 344
              +    + VDPPR+GL D+ +  +        +YISCNP +L RDL  L+  + +E +
Sbjct: 395 ---WNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVKLTRKYNVEYI 451

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D  P T   EC V   +K
Sbjct: 452 QSVDLMPQTSRCECVVKFKKK 472


>gi|325262190|ref|ZP_08128928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
 gi|324033644|gb|EGB94921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
          Length = 471

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 154/395 (38%), Gaps = 48/395 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI---WH 53
            G +     YE+QL  K  ++++++        +        +   YR + EF     + 
Sbjct: 81  GGCMYQTMGYEEQLKMKAGQVKELLDEVVKEPYENEGIKASPKEFRYRNKMEFSFGDEYK 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRA 102
           DG     +     T + +     M     +N +++ ++             ++    LR 
Sbjct: 141 DGPLSLGLHKKGSTYDVLTAGDCMLVHEDMNKILLCVLEYFKERNVGYYRKLQHVGYLRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRAN 156
            L +    T +    +VT            E  + L         LH     +  + +++
Sbjct: 201 LLLRRGDTTGEILVNLVTTTQEEHDLSGLVEGLLELDLEGEIVGILHILNDSLSDVVQSD 260

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215
           +T++   +DY  ER+      + ++    SF QPN+     + E V      IQ   + +
Sbjct: 261 ETRVLYGKDYFYERIL----GMEFKITPFSFFQPNSRGAEVLYETVREYIGDIQDMTVFD 316

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           L+ G G    VLA    +V+ VEI + +VEAAR N A N + N + +     +       
Sbjct: 317 LFSGTGTIGQVLAPVAKQVIGVEIVEEAVEAARENAARNGLGNCRFIAGDVFKVL----- 371

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                     D    +   I +DPPR G+    +  +  Y    I+YISC   SL RDL 
Sbjct: 372 ----------DEIEEKPDVIVLDPPRDGIHPKALPKILDYQVDRIVYISCKATSLTRDLE 421

Query: 334 -ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            IL   + +E++   DQF  T H+E   LL RK +
Sbjct: 422 MILGRGYRVEKVVAVDQFCETVHVETVALLTRKKA 456


>gi|194337875|ref|YP_002019669.1| RNA methyltransferase, TrmA family [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194310352|gb|ACF45052.1| RNA methyltransferase, TrmA family [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 488

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/404 (21%), Positives = 153/404 (37%), Gaps = 55/404 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFR-SEPIHYRMRAEFH------ 50
              L+  +Y+ QL  K  +++  +         P ++     EP HYR + EF       
Sbjct: 87  GCKLMHIRYDAQLVYKQKKVKDALEHLGDFVAPPVMEALACREPFHYRNKIEFSCSNMRY 146

Query: 51  ----------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL- 99
                     +    +           ++ + IDY       +N ++           L 
Sbjct: 147 LLPEELSMETLARPKEFALGFHTPGNFEKVIDIDYCYLAKESMNRVLALTREFALANALV 206

Query: 100 ----------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----RLRDALHA 144
                     LR  + +      +    +VT  Y   L + +R         +    ++ 
Sbjct: 207 PYGAKAHTGFLRNLVVRFSENREEVMVNLVTSWYDEPLMERYRMHLESGMAGQKMTVVNN 266

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
              +   +    K        Y+ ERL      L +R   NSF Q N+     + + +L 
Sbjct: 267 VTERKNTVATGEKEFTLSGAGYITERLG----ALDFRISANSFFQTNSSQAELLYQSILE 322

Query: 205 -ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
            A    +  + +LYCG G  +L LA+H  +V+ +E+ + S+  AR N A N ++NV   +
Sbjct: 323 VAGLRAEDTVYDLYCGTGTITLYLAKHCRQVVGLEVVESSINDARSNAAFNSIDNVAFFQ 382

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYI 321
           +  K+F      +   + L   D        I  DPPR+G+    +  M++  P  I+Y+
Sbjct: 383 VDLKDF------QGMLDLLGSYDAPG----VIITDPPRAGMHPKALSTMLRLRPRRIIYV 432

Query: 322 SCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP SL RD   +    + +  +   D FP+T H+E      R
Sbjct: 433 SCNPASLARDGKEICLQGYKLLSVQPVDMFPHTSHIESVACFER 476


>gi|254423658|ref|ZP_05037376.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
           7335]
 gi|196191147|gb|EDX86111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
           7335]
          Length = 483

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 144/381 (37%), Gaps = 45/381 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIM 62
            YE+QLA K   +   +           +  +   E + YR +A + +      D+    
Sbjct: 121 NYEEQLAAKHRLVVDALARIGKLSNVRVDPVLAAEEQLGYRNKATYPLGLSPTKDVKAGY 180

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLT 111
           + + +   + ++        ++ L+  +   I+               ++    +I   T
Sbjct: 181 YQKGSHRLVNLNQCPVQDERLDPLLAAVKKDIQAREWKIYDERSHKGHIKHLALRIGRRT 240

Query: 112 SQSDQAIVTLIYHRLLDDA----WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
            Q    +V+              W E    +   L    ++        +T +     Y+
Sbjct: 241 GQILVTLVSRSTKLKGIHEQAQQWMERYPEVVGVLVNLNWKKTNAIFGPETFLIAGSSYL 300

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV 226
           +E+       L +     +F Q N      +L+ +         +++ + YCG G F+L 
Sbjct: 301 EEKFA----NLTFHIQPATFFQVNTTQAERLLDEIQTELALTGDEVIVDAYCGVGTFTLP 356

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LAR   + + +E +  SV  A+ N A N + NV                      L D+D
Sbjct: 357 LARQVKQCIGLESSTESVVQAQENAALNGIENVGFRIGDVAAL------------LPDLD 404

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST--THTIE 342
           +   +   + +DPPR G + A +  + A     I+Y+SCNP +L RDL +LS    + + 
Sbjct: 405 V---KPDILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATLARDLRVLSETGGYRVT 461

Query: 343 RLALFDQFPYTRHMECGVLLV 363
           R+   D FP T H+EC V L 
Sbjct: 462 RVQPADFFPQTAHVECAVFLE 482


>gi|153854119|ref|ZP_01995427.1| hypothetical protein DORLON_01418 [Dorea longicatena DSM 13814]
 gi|149753168|gb|EDM63099.1| hypothetical protein DORLON_01418 [Dorea longicatena DSM 13814]
          Length = 470

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 151/406 (37%), Gaps = 61/406 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH--YRMRAEFHIW--HDG 55
             T     YE+QLA K +++++MM          +  +  P+   YR + EF     +  
Sbjct: 81  GCTYQNLPYEEQLAMKNEQVKKMMDEAVNGEYIWEGIKPSPVRSEYRNKMEFSFGDEYKD 140

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAK 103
             L   M  + +  + + +            ++   +   R   L            R  
Sbjct: 141 GPLALGMHKRGSFHDIVNVTDCQIVDEDYRKILACTLECARESGLPYYHRMRHVGYFRHL 200

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLL--------------DDAWRECAIR------LRDALH 143
           L +    T +    +VT      L               DAW E          L   LH
Sbjct: 201 LVRKAVKTGEILVDLVTASDTAELGVDPAEAMKKIQTFKDAWLEKMTAMNFDGTLVGILH 260

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
            +   +  + +   T++   +DY  E L      L ++    SF Q N+     + E   
Sbjct: 261 TKNDSLADVVKDEGTEVLFGQDYFYEELL----GLKFKITPFSFFQTNSLGAEVLYETAR 316

Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                    ++ +LY G G  + +LA    +V+ VEI + +VEAA+ N   N+++N    
Sbjct: 317 EYIGDTNEKVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKENAKLNNLDNCTFW 376

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILY 320
                              LK ID        I +DPPR G++   +  +       ++Y
Sbjct: 377 AGDV---------------LKVIDELGEVPDLIMLDPPRDGVNPKALMKILNFGVERLVY 421

Query: 321 ISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           I+C P SL RDL ++    + +E+++  D FP T H+E   LL +K
Sbjct: 422 IACKPTSLARDLEMIQGRGYKVEKISGVDLFPGTYHVETVCLLSKK 467


>gi|167750197|ref|ZP_02422324.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702]
 gi|167656759|gb|EDS00889.1| hypothetical protein EUBSIR_01171 [Eubacterium siraeum DSM 15702]
          Length = 493

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 134/396 (33%), Gaps = 49/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
             +L    YE QL  K   ++         + +       +    YR + +  I  D D 
Sbjct: 79  GCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGYRNKLQIPIGTDKDG 138

Query: 58  L-YHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105
                 +   +   +  +  +               +   L +        + +LR    
Sbjct: 139 NLIAGFYAFHSHRIVPCEKCLLQPDIFLKITADFLKISTGLNLTAYDETTHKGILRHLYL 198

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +  Y + +    IV            +  + RL +        +  +     T + L   
Sbjct: 199 RKGYYSGEICLCIVVAKNV----PEIKILSDRLLEKYPEIVSSVINVNN-RDTNVILG-- 251

Query: 166 YVDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             DE + +  +  I              +F Q N      +        +     +L+LY
Sbjct: 252 --DEEIVLTSKNYICDIMCKNAVNIAPKAFYQVNTPCAEQLYSSACDFAEPKGKTVLDLY 309

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L +AR   +++ VEI   ++E A+ N  AN + N + +   + E  + +    
Sbjct: 310 CGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARILHS-- 367

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                      + R   I VDPPR G        + A+  P I+ +SCN  +  RD +  
Sbjct: 368 ----------RNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACF 417

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLV-RKPSGW 369
           +   ++ ++    D F  T H+E  VLL  +KP G 
Sbjct: 418 AELGYSTDKCVAVDMFSGTNHVETVVLLSHKKPDGH 453


>gi|110598563|ref|ZP_01386831.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM
           13031]
 gi|110339797|gb|EAT58304.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM
           13031]
          Length = 480

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 153/399 (38%), Gaps = 47/399 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH--- 53
              L+  +YE Q+A K  +++  +           +  +  + P+HYR + EF       
Sbjct: 87  GCKLMHIRYEAQIAYKEKKVKDALEHLGSFSNPPVSPVLAAASPVHYRNKIEFSCSSMRY 146

Query: 54  -----------DGDDLYHIMFDQQTK--ERMRIDYFMPGSLLINA---LMIEMMATIRLE 97
                      +    + + F       + + IDY    + L+N    L  E      LE
Sbjct: 147 LLPEELSQEELERPKNFALGFHTPGNFEKVIDIDYCYLATELMNRVLKLTREFALANNLE 206

Query: 98  PL-LRAKLFQIDYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
           P  +RA    +  L    +    + +V L+     +   ++    L+ AL   K  +   
Sbjct: 207 PYGVRAHTGFLRNLVVRFSEDQRELMVNLVTSWYDEKLMQQYNAALQSALAGEKVTVVNN 266

Query: 153 GRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATK 207
             + K  +    +         +T     L +R   NSF Q N+     +   +L  A  
Sbjct: 267 VTSRKNGVATGEEEFLLSGTGIITERLGELDFRISANSFFQTNSRQAEVLYNAILDVAGL 326

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                + +LYCG G  +L +A+H    + +E+ + S+  AR N A N V N    ++  K
Sbjct: 327 NEDDTVYDLYCGTGTITLYMAKHCRSAVGLEVVESSINDARSNAALNGVENADFYQVDLK 386

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325
           +F   + +                   I  DPPR+G+    +  +  +    I+Y+SCNP
Sbjct: 387 DFHAILDKLESHG----------APGVIITDPPRAGMHPKALETMLRFRPRRIVYVSCNP 436

Query: 326 DSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
            SL RD   ++   +T++ +   D FP+T H+E      
Sbjct: 437 ASLARDGKEIALQGYTLKSVQPVDMFPHTAHIESVACFE 475


>gi|225019491|ref|ZP_03708683.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum
           DSM 5476]
 gi|224947712|gb|EEG28921.1| hypothetical protein CLOSTMETH_03444 [Clostridium methylpentosum
           DSM 5476]
          Length = 467

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 144/387 (37%), Gaps = 39/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHDGDD 57
             +L   +YE +L  K  ++          +L +    S P    YR +A+F +      
Sbjct: 92  GCSLRHIRYEAELDIKRRQVEACFRRIGGIDLTVERILSNPHTEGYRNKAQFPVALRDGK 151

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                + +++   +        S             I+   +          L+R    +
Sbjct: 152 AVAGFYAKRSHRVVPCGDCRLQSPAFAPLVRVILDFIDEYHLPPYDETNHTGLIRNLYLR 211

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR----ECAIRLRDALHARKYQIQLIGRANKTKICL 162
               T +    +V    H    D        C  +++  L  R  Q   +   ++  +  
Sbjct: 212 EAPATGEIMVCLVATKKHIPSADELARRLVACNPKVKSVLVNRNSQKTNVILGDRCSVVW 271

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            +  + + L    R +       SF Q N+     + +     A    +  L++LYCG G
Sbjct: 272 GKPVIHDVL----RGVDVELSPLSFYQVNSLQAERLYDLAEEYAHLTGEETLVDLYCGAG 327

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L +A    RV+ VEI   +VE AR +   N V N + +   +KE  +++ +      
Sbjct: 328 TIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCADAKEAARSLAQ------ 381

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STT 338
                    R   + VDPPR G D + +  +   A   I+ ISCNP +  RD  +L    
Sbjct: 382 ------QGLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAARDCGLLQQQG 435

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + +E +A  D F  T H+EC + LV++
Sbjct: 436 YRVEEVAAADLFSRTLHVECVISLVKE 462


>gi|256028670|ref|ZP_05442504.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium sp. D11]
 gi|289766583|ref|ZP_06525961.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D11]
 gi|289718138|gb|EFD82150.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. D11]
          Length = 456

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 159/383 (41%), Gaps = 34/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M     + +++I       +  +YR +         +
Sbjct: 80  GCDFAMLKYESQLKYKKLMVEEVMRKIAGLSDIEISDVLASEDIYNYRNKITEPFSIYNN 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +   +  S L N ++ E+   +    +        +  L  I  
Sbjct: 140 KIITGFFKRKSHEIFEVGENILNSKLGNRIIKELKEILNKNKISVYNEITHKGLLRNIMI 199

Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+V LI +   + +  ++   +LR+ +   K  I +   + KT   +      
Sbjct: 200 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGEKNIL 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y ++ +      + +     SF Q N      + +  ++    I    +++ Y G G  
Sbjct: 259 IYGEKSIKENINGIEFHISPTSFFQINIKQAKRLYDIAISFFDDIDNKYIVDAYSGTGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++++   +V A+EI K + E        N + N++ +  + ++             L 
Sbjct: 319 GMIMSKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEK------------ELV 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
            +  ++ +  TI  DPPR GL+ + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 367 KLINNNQKIDTIIFDPPRKGLEASIIDKVAELNLKEVVYISCNPSTFARDIKLFSEKGYV 426

Query: 341 IERLALFDQFPYTRHMECGVLLV 363
           +++L   D FP T H+EC  L+ 
Sbjct: 427 LKKLQAVDMFPQTSHIECVGLMQ 449


>gi|163802964|ref|ZP_02196851.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4]
 gi|159173254|gb|EDP58082.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. AND4]
          Length = 439

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 161/371 (43%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L   +Y+QQL  K   LRQ+M  F   ++++      + + YR RA   +  D    
Sbjct: 90  GCDLQHLKYDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGDSLSYRRRARVSLLVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +N L+ E+ +T++       +L  ++ +   S  
Sbjct: 150 KLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKK-SEQLGHVELVLGDSGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I TL +   L D      + L    HA    + L+   ++  +        + + V   
Sbjct: 209 CI-TLRHLSKLADEETNTLVALARRHHA---SLYLMPETDQLNLIEGDVPFYQEVGV--- 261

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
           T+ +    N+F Q N  +N  M+   +        + +L+L+CG GNFSL +A+H   V+
Sbjct: 262 TVPF--TPNNFIQVNQAVNQKMVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKHAKHVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     VE A  N + N +NN +    + ++              +     + +F  +
Sbjct: 320 GVEGVAEMVEKAANNASLNQINNAQFYHANLEQ------------DFEGQVWAAEQFDKV 367

Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
            +DP R+G       + V     ++Y+SCNP +L RD  S+L   + + +L + D FP+T
Sbjct: 368 LLDPARAGASGIIDQVSVLGAQRVVYVSCNPATLARDSQSLLGQGYQLTKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 428 SHLESMALFEK 438


>gi|312144153|ref|YP_003995599.1| RNA methyltransferase, TrmA family [Halanaerobium sp.
           'sapolanicus']
 gi|311904804|gb|ADQ15245.1| RNA methyltransferase, TrmA family [Halanaerobium sp.
           'sapolanicus']
          Length = 456

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 153/389 (39%), Gaps = 41/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFR----SEPIHYRMRAEFHIW-HDG 55
              L   +Y+++L  K + L+Q++     +   +I       +   YR +A+F +   + 
Sbjct: 80  GCQLQHLEYKKELELKNNNLQQIIKRIAGIDEYKINEVLAAEDDFRYRNKAQFPLTTKES 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKL 104
            ++    + + + E +     +    LIN +            I +      E LLR  +
Sbjct: 140 GEITAGFYKRGSHEVVPYHDCLIQHPLINRILKTTLKELNKREISVYDEETAEGLLRHLV 199

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKI 160
            ++   T+Q+    VT        +   E  +     L+  +     +   +    K  I
Sbjct: 200 IRVGVCTNQALLIFVTNGNEFKAKENIAEKILAAIPELKGVIQNINNKNTNVIFGKKDII 259

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCG 219
               +Y+ E +        Y     SF Q N      +   VL    +  +  +++ + G
Sbjct: 260 IRGENYIKEYINKTA----YLISARSFFQVNTLQAEKLYNKVLDFLEENNEQKIVDAFSG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G+ +L +A   ++V AVE  KP+V+  + N A N + N+K +    ++    +  E   
Sbjct: 316 TGSIALYIAEKAEKVFAVESLKPAVKDGKRNAALNKIKNIKFINGLVEDELAKILAEE-- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                      +  +I  DPPR GL + T+ ++       ++YISCNP +  RDL  L  
Sbjct: 374 -----------KIDSIIFDPPRKGLAEKTIDLLNNLEIEKVIYISCNPATQARDLKKLKG 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
            + +  +   D FP T H+E   LL  K 
Sbjct: 423 KYRLIEIQGVDMFPNTYHIESVALLKLKN 451


>gi|188585106|ref|YP_001916651.1| RNA methyltransferase, TrmA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349793|gb|ACB84063.1| RNA methyltransferase, TrmA family [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 454

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 146/382 (38%), Gaps = 35/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y+ QL  K + +   M              I    P +YR + +  +   G 
Sbjct: 85  GCQLQHLSYKGQLQYKENLVANQMKKVAGLKNPRVLPAIGMESPWYYRNKFQIPVKPIGG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQIDYL 110
                +F ++++  + ID+ M      N ++ +M   +           L+  + ++   
Sbjct: 145 KPRLGLFQKRSQNLVEIDHCMIQKHGNNEVLEKMRNLVDSYEKEFYNCELKHIISRVGDK 204

Query: 111 TSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           T Q     VT    +   +++ +  +     L   +     + +     ++ K    R+Y
Sbjct: 205 TDQVQLTFVTGSEKIDNKQMILEPLKNGMANLVGIVQNINKKPRGNVLGDRFKTLWGREY 264

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
           + + L        +R    +F Q N      + + V    K     +++++YCG G  SL
Sbjct: 265 LMDNLLDK----KFRVSAGAFYQVNPSQTEVLYQKVFELCKLKGVENVMDIYCGIGTISL 320

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           + A +  +V+ +EIA+ +V+ A  N   N   N    +  +++               + 
Sbjct: 321 LAAENASKVVGIEIAEEAVKDANINKNINGQENAWFYQARAED------------EKTES 368

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIE 342
            I  Y  + + +DPPR G D+  +  +       I Y+SCNP +L RD+  L    +  E
Sbjct: 369 IIQDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAYVSCNPATLARDVGKLIEFGYYPE 428

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
                D FP T H+E   +L +
Sbjct: 429 LFQPVDMFPQTTHIEVICILTK 450


>gi|226323301|ref|ZP_03798819.1| hypothetical protein COPCOM_01073 [Coprococcus comes ATCC 27758]
 gi|225208491|gb|EEG90845.1| hypothetical protein COPCOM_01073 [Coprococcus comes ATCC 27758]
          Length = 455

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/393 (22%), Positives = 148/393 (37%), Gaps = 47/393 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH--YRMRAEFHIW--HDG 55
             T     YE+Q+  K  ++  MM A    +   +  +  P+   YR + EF     +  
Sbjct: 81  GCTYQNLPYEKQVEMKEAQIHAMMDAAVDGDYIWEGVKESPVREAYRNKMEFSFGDEYKD 140

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAK 103
             L   M  + +  + + +            ++  ++       L            R  
Sbjct: 141 GPLALGMHKRGSFHDIVNVTECKIVDEDFRRIIKAVLEFATDTGLPYYHRMRHTGFFRHL 200

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           L +    T +    +VT    +L +    E         +L   LH     +  + +   
Sbjct: 201 LVRKAVRTGEILIDLVTTSEAQLDEARLVEKLTGLSYDGKLAGILHTTNNSLADVVKDEG 260

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
           TKI   +DY  E L      L ++    SF Q N+     + E   +     +  ++ +L
Sbjct: 261 TKILYGQDYFYEELL----GLKFKITPFSFFQTNSLGAEVLYEAARSYIGETKDKVIFDL 316

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  + +LA    +V+ VEI + +VEAA+ N A N ++N                  
Sbjct: 317 YSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKENAALNGLDNCTFWAGDV---------- 366

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
                LK ID        I +DPPR G+    +  +       ++YI+C P SL RDL +
Sbjct: 367 -----LKVIDDLGEVPDLIVLDPPRDGVHPKALEKIIDFGVERMVYIACKPTSLARDLEL 421

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
           L    + +ER+   D FP T H+E   LL RK 
Sbjct: 422 LQGRGYQVERIGCVDLFPSTYHVETVCLLSRKD 454


>gi|156975785|ref|YP_001446692.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|226725399|sp|A7MTS9|RUMA_VIBHB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|156527379|gb|ABU72465.1| hypothetical protein VIBHAR_03529 [Vibrio harveyi ATCC BAA-1116]
          Length = 439

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 32/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L    Y+QQL  K   LRQ+M  F   ++++      E + YR RA   ++ D    
Sbjct: 90  GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIELGAPVLGESLGYRRRARVSLFVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +N L+ E+ +T++       +L  ++ +    + 
Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKK-PEQLGHVELVLG-DNA 207

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
             +TL +   L +      + L     A+++Q  L       ++    D V+  +     
Sbjct: 208 PCITLRHLNKLTEKETNTLVEL-----AKRHQASLYLMPETDQL----DLVEGEVPFYQE 258

Query: 177 -TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +      N+F Q N  +N  M+   +        + +L+L+CG GNFSL +A+    V
Sbjct: 259 AGVTVPFTPNNFIQVNQAVNQKMVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKRAKHV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE A  N + N +NN +    + ++              +     + +F  
Sbjct: 319 VGVEGVAEMVEKAVNNASLNQINNARFYHANLEQ------------DFEGQVWAAEQFDK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G       + V     I+Y+SCNP +L RD  S+L   + + +L + D FP+
Sbjct: 367 VLLDPARAGASGIIDQVSVLGARRIVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPH 426

Query: 353 TRHMECGVLLVR 364
           T H+E   L  +
Sbjct: 427 TSHLESMALFEK 438


>gi|325695098|gb|EGD37000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK150]
          Length = 456

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 146/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   E ++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMKESLYYRAKLQFQTRKY 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   I   +  ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVQDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYREAVKALDVTKEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N       N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L +K S
Sbjct: 421 CRVYDVRYIQSVDMFPHTARTEAVVKLSKKDS 452


>gi|164687720|ref|ZP_02211748.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM
           16795]
 gi|164603494|gb|EDQ96959.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM
           16795]
          Length = 453

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 153/394 (38%), Gaps = 49/394 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEPIH--YRMRAEFHIWHDGDD 57
             T+L   YE+QL  K  ++  +  + ++   +     S P +  YR + EF   ++  D
Sbjct: 79  GCTILSLPYEKQLELKKQQILDLFESHEITGFEFLGIESSPNNTCYRNKMEFTFGNEMKD 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL---------------EPLLRA 102
               +   +    + I   + G +LI+   I+++                    +  LR 
Sbjct: 139 GPLTIGMHKKGRHIDI-LTVDGCMLIDQDFIKILTATEEFFRAEGLPYYRGNDHKGYLRH 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA------LHARKYQIQLIGRAN 156
            + +    T++    IVT        D ++   + L         LH     +    + +
Sbjct: 198 LVVRKGIKTNEMMVMIVTSTQLDYDMDKYKNMLLGLDLDADLASVLHCLNDNLADAVKCD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           + ++   RD++ E L      L ++    SF Q N      +           +  +L +
Sbjct: 258 ELRVLHGRDHIYEELL----GLRFKISPFSFFQTNTLGAEKLYSMAREFVGDYKDKVLYD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G    VL++   +V  +EI + +VEAA  N   N + + + +     +   +++ 
Sbjct: 314 LYSGTGTIGQVLSQKARKVYGIEIVEEAVEAANENAKLNGLTHCEFIAGDVAKTVNSLKE 373

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          R   I VDPPR G+    V  +  +    I+YISCNP +L  DL 
Sbjct: 374 ---------------RPDIIIVDPPRPGIHKDAVRDISKFNAEEIIYISCNPKTLVVDLQ 418

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
              +  + ++++   D FP T H E  VLL RK 
Sbjct: 419 GFESYGYEVKKVRCMDMFPNTPHCETVVLLQRKD 452


>gi|157149945|ref|YP_001449932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157074739|gb|ABV09422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 454

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 149/392 (38%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y +QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 79  GCQIMHLHYNKQLEFKEDLLRQALKKFAPVGYENYEIRPTIGMQEPLYYRAKLQFQTRKY 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   ++ +   +++  RL      K   +  + 
Sbjct: 139 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLSKYRLPIYDERKTAGVRTVM 198

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 199 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 254

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I      + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 255 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTEEDHLIDAY 310

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N      +N      +++E       E 
Sbjct: 311 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFDNTLYEAGTAEEIIPRWYAE- 369

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 370 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 418

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           S  + +  +   D FP+T   E  V L ++ S
Sbjct: 419 SRVYDVHYIQSVDMFPHTARTEAVVKLSKRES 450


>gi|295101716|emb|CBK99261.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii
           L2-6]
          Length = 548

 Score =  253 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 139/393 (35%), Gaps = 37/393 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDD 57
             +L    Y  +L  K + +          ++ +  + P      YR + +F +  D + 
Sbjct: 82  GCSLRHMDYAAELRSKQESVADAFRRIGGLDVPVLDALPSPEVDRYRNKVQFPVGRDKNG 141

Query: 58  -LYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLF 105
                 +  +T   +          ++N +   +                 + L+R    
Sbjct: 142 APCIGFYAGRTHRIVPCPDCRLQPGVLNDIGNALCSFFAAHGIQPYDEESGKGLVRHIFL 201

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +     + S Q +V L+  R       E    LR+        +  +  A KT + L  +
Sbjct: 202 RRG---THSGQIMVCLVCTRPKFPHSEELVTALREQFSDIASVLINVN-AKKTNVILGEE 257

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220
               Y    +      +  R    SF Q N      +        +    D+L +LYCG 
Sbjct: 258 TVSLYGPGYIEDTLCGVPVRLGPLSFYQVNTLAAERLYGIAAEYAQLEPSDVLLDLYCGM 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L +A     ++ VEI   ++++A+ N A         V   S+ F     +     
Sbjct: 318 GTIGLSMADRCRELIGVEIVPEAIDSAKANAARMG----DAVAAKSRFFCADAGQAAAR- 372

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337
               +     R   I +DPPR G D+ T+  V       ++Y+SCN  +  RD + L   
Sbjct: 373 ----LAAEGLRPDVIMLDPPRKGCDETTLSAVAQMSPRRVVYVSCNSSTAARDAAWLEEH 428

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
            +  E++   D FP TRH+E  VLL +  +  H
Sbjct: 429 GYHAEKVQPVDLFPRTRHVETVVLLSKLNTKQH 461


>gi|237743303|ref|ZP_04573784.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 7_1]
 gi|229433082|gb|EEO43294.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium sp. 7_1]
          Length = 451

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 159/385 (41%), Gaps = 34/385 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEP-IHYRMRAEFHIWHDGD 56
                + +YE QL  K   + ++M      +      +  SE   +YR +         +
Sbjct: 80  GCDFAMLKYESQLKYKKLMVEEVMRKIAGLDNIQINDVLASEDIYNYRNKIIEPFSVYDN 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
            +    F +++ E   +D  +  S L N ++  +   +    +        +  L  I  
Sbjct: 140 KIITGFFKRKSHEVFEVDENILNSKLGNKIIKGLKEILNKNKISVYNENTHKGLLRNIMI 199

Query: 110 LTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+ +++A+V LI +   + +  ++   +LR+ +   K  I +   + KT   +      
Sbjct: 200 RTNSNNEAMVVLIINSNKITENIKKLLFKLRENISEIK-SIYISLNSKKTNTVIGEKNIL 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y ++ +      + +     SF Q N      + +  ++    I    +++ Y G G  
Sbjct: 259 IYGEKSIKENINGIEFHISPTSFFQINVKQAKRLYDIAISFFDDIDDKYIVDAYSGTGTI 318

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +++++   +V A+EI K + E        N + N++ +  + ++             L 
Sbjct: 319 GMIMSKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEK------------ELV 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THT 340
            +  ++ +  TI  DP R GLD + +  V       ++YISCNP +  RD+ + S   + 
Sbjct: 367 KLINNNQKIDTIIFDPSRKGLDASIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +++L   D FP T H+EC  L+V++
Sbjct: 427 LKKLQAVDMFPQTSHIECVGLIVKE 451


>gi|125624135|ref|YP_001032618.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492943|emb|CAL97906.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070909|gb|ADJ60309.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 456

 Score =  252 bits (644), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 143/383 (37%), Gaps = 45/383 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAF----QVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +Q+  K  ++  ++         P   +  S + I YR +A+  +      L    + 
Sbjct: 92  YNEQVKFKQKQVVDILRKTAGKEDFPVSPVIESIKTIKYRNKAQIPVQMVNGILTTGFYR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + +   + ++ F      I+A+++ +    R            +  LR  + +  + TS+
Sbjct: 152 KNSHSLIPVEDFYIQHPEIDAVVLFLRDEFRKINLQAYDEKTRKGWLRNIVVRRGFHTSE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-------KICLDRDY 166
              ++V  +  + L +       +L +     K     I     +        +   +D+
Sbjct: 212 MMVSLV--VTSKKLPENVDLVIDKLVEHFTNIKSVQLNINNGTGSFILGKEFVLLYGKDF 269

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           + + +        Y+    +F Q N      + E      +   GD +++ Y G G   +
Sbjct: 270 ITDLMLDK----TYQISAPAFYQVNTPQAEKLYETAFEFAELKPGDIVIDAYSGIGTIGI 325

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A     V  +E+   +VE A+ N   N + N      ++++       E         
Sbjct: 326 SMADRVAEVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKIMPKWLDE--------- 376

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TTHTIE 342
                +   IFVDPPR GLD+  +    A     I+YISCNP +  RD+       + ++
Sbjct: 377 ---GIKPDVIFVDPPRKGLDETFIKSATATNPRRIVYISCNPATFARDVVRFENEGYILD 433

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           ++   D FP T H+E      +K
Sbjct: 434 KVQPVDLFPQTHHIELVARFNKK 456


>gi|330828283|ref|YP_004391235.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Aeromonas veronii
           B565]
 gi|328803419|gb|AEB48618.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Aeromonas veronii
           B565]
          Length = 450

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 133/383 (34%), Gaps = 37/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              +    Y  QL  K   ++  +    + +  +        P  YR +A++ +      
Sbjct: 79  GCQVRPLAYPAQLKLKQALVQSALEQVGLGDTPVKDILGMESPFAYRNKAQYAVRGCDAG 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                + + + + +  D       L           +    I     +     +R  + +
Sbjct: 139 AEIGFYRKHSHDLITADDCAVQDPLHVELNARVRNWMREHNIAAYDEVNHSGCVRNLMTR 198

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL--RDALHARKYQIQLIGRANKTKICLDR 164
             + + +    +VTL      +         L     +     +          ++ L  
Sbjct: 199 KGFKSGELMVVLVTLGEALPFEAELLAALSDLPVTTLVQNINDERTNRILGATNRVLLGE 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
             + +++      L +     SF Q N      +    L   +    + + ++YCG G  
Sbjct: 259 GVIRDKIH----ELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA    +V+ +E  + ++  AR N A N + + +     +++             + 
Sbjct: 315 SLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL------------MP 362

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340
           ++         + +DPPR G D A +  +   A   ++Y+SCNP +L RDL+ L      
Sbjct: 363 ELHAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFV 422

Query: 341 IERLALFDQFPYTRHMECGVLLV 363
           ++ +   D FP++ H+E    L 
Sbjct: 423 LDEVQPVDMFPHSMHVEAVARLS 445


>gi|116512081|ref|YP_809297.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116107735|gb|ABJ72875.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 456

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 143/383 (37%), Gaps = 45/383 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAF----QVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y +Q+  K  ++  ++         P   +  S + I YR +A+  I      L    + 
Sbjct: 92  YNEQVKFKQKQVVDILRKTAGKEDFPVSPVIESIKTIKYRNKAQIPIQMVNGILTTGFYR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
           + +   + ++ F      I+A+++ +    R            +  LR  + +  + TS+
Sbjct: 152 KNSHSLIPVEDFYIQHPEIDAVVLFLRDEFRKINLQAYDEKTRKGWLRNIVVRRGFHTSE 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-------KICLDRDY 166
              ++V  +  + L +       +L +     K     I     +        +   +D+
Sbjct: 212 MMVSLV--VTSKKLPENVDLVIDKLVEHFTNIKSVQLNINNGTGSFILGKEFVLLYGKDF 269

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           + + +        Y+    +F Q N      + E      +   GD +++ Y G G   +
Sbjct: 270 ITDLMLDK----TYQISAPAFYQVNTPQAEKLYETAFEFAELKPGDIVIDAYSGIGTIGI 325

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A     V  +E+   +VE A+ N   N + N      ++++       E         
Sbjct: 326 SMADRVAEVYGMEVVPAAVENAKRNAQLNELENTHYEVGTAEKIMPKWLDE--------- 376

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TTHTIE 342
                +   IFVDPPR GLD+  +    A     I+YISCNP +  RD+       + ++
Sbjct: 377 ---GIKPDVIFVDPPRKGLDETFIKSATATNPRRIVYISCNPATFARDVVRFENEGYILD 433

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           ++   D FP T H+E      +K
Sbjct: 434 KVQPVDLFPQTHHIELVARFNKK 456


>gi|291531341|emb|CBK96926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
           70/3]
          Length = 449

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 132/390 (33%), Gaps = 48/390 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
             +L    YE QL  K   ++         + +       +    YR + +  I  D D 
Sbjct: 79  GCSLRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGYRNKLQIPIGTDKDG 138

Query: 58  L-YHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLF 105
                 +   +   +  +  +               +   L +        + +LR    
Sbjct: 139 NLIAGFYAFHSHRIVPCEKCLLQPDIFSKITADFLKISTGLNLTAYDETMRKGILRHLYL 198

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +  Y + +    IV            +  + RL +        +  +     T + L   
Sbjct: 199 RKGYYSGEICLCIVVAKNV----PEIKILSDRLLEKYPEIVSSVINVNN-RDTNVILG-- 251

Query: 166 YVDERLTVAGRTLI--------YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             DE + +  +  I              +F Q N      +        +     +L+LY
Sbjct: 252 --DEEIVLTSKNYICDIMCKNAVNIAPKAFYQVNTPCAEQLYSSACDFAEPKGKTVLDLY 309

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L +AR   +++ VEI   ++E A+ N  AN + N + +   + E  + +    
Sbjct: 310 CGAGTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARILHS-- 367

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                      + R   I VDPPR G        + A+  P I+ +SCN  +  RD +  
Sbjct: 368 ----------RNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCAYF 417

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +   ++ ++    D F  T H+EC VLL +
Sbjct: 418 AELGYSTDKCVAVDMFSGTNHVECVVLLTK 447


>gi|332199219|gb|EGJ13297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA41317]
          Length = 458

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 144/384 (37%), Gaps = 40/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLL 362
           + +  +   D FP+T   E  V L
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKL 447


>gi|323484926|ref|ZP_08090281.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum
           WAL-14163]
 gi|323401807|gb|EGA94150.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum
           WAL-14163]
          Length = 457

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 158/397 (39%), Gaps = 52/397 (13%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIH--YRMRAEFHIWHD--- 54
            G L     YE QL  K +++++++         +  +  P+   YR + EF    +   
Sbjct: 79  GGCLYQTIPYETQLEIKKEQVKELLDGVCGEYEFEGIKGSPLADCYRNKMEFSFGDEVKD 138

Query: 55  -----GDDLYHIMFDQQTKERMRIDYFMPGSLLIN------ALMIEMMATIRLEPLLRAK 103
                G       +D  T    RI +     +L+          +     ++    LR  
Sbjct: 139 GPLALGMHKRGSFYDVVTTGECRIVHKDFCDILLCTKAYFEEKEVGFYKKMQHTGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIY-----HRLLDDAWRECAI------RLRDALHARKYQIQLI 152
           L +    T +    ++T         + L   W E  +      ++   LH +   +   
Sbjct: 199 LVRRAVKTGEILLDLITTTQIGVEEEKELLAGWLERLLVLPLEGKMAGILHTKNDSLADA 258

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
            +   T++   +DY  E L      L +R    SF Q N+     + E         +G 
Sbjct: 259 VKDEGTEVLYGKDYFFEELL----GLKFRISPFSFFQTNSLGAEVLYEKTREYVGETKGK 314

Query: 213 LL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ +LY G G  + +LA   ++V+ VEI K +VEAA+ N   N ++N + +         
Sbjct: 315 VVFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENARLNGLDNCEFIAGDV----- 369

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     LK +D  + + + I +DPPR G+    +  +  +    ++Y+SC P SL 
Sbjct: 370 ----------LKVVDELTDKPELIVLDPPRDGIHPKAIEKIIGFGVERMVYVSCKPTSLA 419

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL IL    + +E+    D FP T ++E  VLL RK
Sbjct: 420 RDLVILQENGYRVEKGCCVDMFPGTANVETVVLLGRK 456


>gi|331265805|ref|YP_004325435.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
 gi|326682477|emb|CBZ00094.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
          Length = 453

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 146/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPTGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 NNQVKVGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKTLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    +VT   L  ++L+ D   +    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIVVTNRQLNLNQLVKDLVNDFPEVVTVAVNTNIAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A     +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFATKVKSLRGMDIIPEAIEDAKRNAKKMGFDNTHYEAGTAEEIIPRWYQE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLD   +  +  Y    ++Y+SCN  +L RDL  L   
Sbjct: 372 --------GYRANALIVDPPRTGLDGKLLDTILTYVPEKMVYVSCNVSTLARDLVKLVKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP+T   E  V LV+K
Sbjct: 424 YDLQYIQSVDMFPHTARTEAVVKLVKK 450


>gi|187932429|ref|YP_001884796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B str. Eklund 17B]
 gi|187720582|gb|ACD21803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           B str. Eklund 17B]
          Length = 450

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--- 54
             +     YE+QL    D ++ +     V   +    +  SE   YR + EF    +   
Sbjct: 79  GCSSQTLSYEKQLQVLEDEIKDLFKEADVTTGEFLGVLGSSEQWEYRNKMEFTFGDEEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103
           GD    +    ++   M +D+          +            +     ++ E  LR  
Sbjct: 139 GDLSIGMHMRGKSFGIMTVDHCKIVDEDYRRIIRLTADYFGKQDLPYYRVMKREGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    +VT          + E          L   LH             K
Sbjct: 199 VIRKAQNTGEILVNLVTTTQIDFDLSEYVELLKSQDYKGTLVSILHTENNSFSDAVIPEK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
             +   RDY+ E+L      L ++    SF Q N      +   V       +  ++ +L
Sbjct: 259 VNVLYGRDYIQEKLL----GLDFKISPFSFFQTNTKGAESLYSLVRDFMGSSENKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A +  +V+ +E+ + +VEAA+ N   N +NN + +     E  + ++  
Sbjct: 315 YCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGDVAEIIKTVK-- 372

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPRSG+    +  V  +  P I+Y+SCNP +L  DL +
Sbjct: 373 -------------DKPDIIILDPPRSGVHPKALDYVIKFNAPEIVYVSCNPKTLVTDLKV 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + I +  + D FP T H E  V L++
Sbjct: 420 LIERGYKIIQTQVKDMFPNTPHAETIVKLIK 450


>gi|328946804|gb|EGG40941.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1087]
          Length = 456

 Score =  252 bits (643), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 147/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   I   +  ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I    + + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEEAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N       N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFGNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           S  + +  +   D F +T   E  V L ++ S
Sbjct: 421 SQVYDVHYIQSVDMFSHTARTEAVVKLSKRDS 452


>gi|270292218|ref|ZP_06198433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M143]
 gi|270279746|gb|EFA25588.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           M143]
          Length = 456

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 147/387 (37%), Gaps = 40/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K + L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTNLLHQALKKFAPAGYESYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 NNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKTLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ D  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKDLVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A     +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFANKVKSLRGMDIIPEAIEDAKQNAQRMGFDNTHYEAGTAEEIIPRWYQE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   
Sbjct: 372 --------GYRANALIVDPPRTGLDDKLLDTILTYVPEKMVYVSCNVSTLARDLVKLVKV 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FP+T   E  V L++K
Sbjct: 424 YDLQYIQSVDMFPHTARTEAVVKLIKK 450


>gi|259502049|ref|ZP_05744951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
           DSM 16041]
 gi|259169962|gb|EEW54457.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
           DSM 16041]
          Length = 474

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 130/381 (34%), Gaps = 41/381 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y QQLA K   +   +  FQ            I   E  HYR +A+F +      +   +
Sbjct: 109 YPQQLAFKRQVVLDSLEKFQPYGYRNYDVRQTIAAPEEYHYRNKAQFQVRMVDGHVAAGL 168

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   + + + +                   LI  L I +        +++  + +  + T
Sbjct: 169 YKPNSHDLVDMQECAVQMPRTMKVVRTVVQLIEDLQIPVYDEAHNSGIIKTIVVRESWTT 228

Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
            +     +T    L++ R L  A  +    +   +         +    +      +  +
Sbjct: 229 GELQLTFITNTPKLVHKRPLLTAIAQQLPEVVSIMQNVNPGDTPLVWGEQMIHLAGKQTI 288

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLV 226
            E L      L +     SF Q N      + E    A     +  L++ Y G G   L 
Sbjct: 289 TESLM----GLDFELSARSFLQLNPEQTEVLYEQAAEALELDREDTLIDAYAGIGTIGLA 344

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     V  +EI   +V  A  N   N ++N       ++E       E          
Sbjct: 345 LAARVKAVRGMEIIPEAVADANANAQLNGISNAHYEVGKAEEVMPRWLAE---------- 394

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERL 344
               +F  + VDPPR+GLDD  +  +         Y+SC   SL R+L  L++ + ++ +
Sbjct: 395 --GLQFDALVVDPPRTGLDDELIKQILKVKPRKFAYVSCGMASLARNLRRLTSVYHVDYI 452

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D  P T   E  V L  +
Sbjct: 453 QPIDMMPQTARCEAVVKLSLR 473


>gi|37522703|ref|NP_926080.1| hypothetical protein gll3134 [Gloeobacter violaceus PCC 7421]
 gi|50401751|sp|Q7NGN4|Y3134_GLOVI RecName: Full=Uncharacterized RNA methyltransferase gll3134
 gi|35213705|dbj|BAC91075.1| gll3134 [Gloeobacter violaceus PCC 7421]
          Length = 457

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 137/381 (35%), Gaps = 46/381 (12%)

Query: 9   QYEQQLAEKVDRLRQMML---AFQVPNLQ--IFRSEPIHYRMRAEFHIWHDG-DDLYHIM 62
            Y  QL  K  ++R+ +     F  P ++  I +  P  YR ++ F I  D   +     
Sbjct: 97  DYPFQLEAKQRQVREALEHLGGFAEPPVEPVIAQPRPFGYRNKSTFPIGRDARGEPVIGY 156

Query: 63  FDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           + + +   + +D                  LI      +         LR    +I   T
Sbjct: 157 YQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQGWSIYDEKHHRGALRHLGLRIGERT 216

Query: 112 SQSDQAIV----TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
            Q     V    TL   +    A  +    L         +        +T+    +D++
Sbjct: 217 GQRLLTFVVNGQTLSGIKPAAQALMDRFADLVGVCLNTHTERGNTIFGPQTRCLAGQDFI 276

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226
           +E L        +R    +F Q        +   V   A    +  +++ YCG G  SL 
Sbjct: 277 EEVL----DGFRFRIEPTTFFQICTSQAEILARLVARGADATAEQTVVDAYCGIGTLSLP 332

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LAR    V+ +E    SVE AR N   N + N + +  + +     +R            
Sbjct: 333 LARAARAVVGIESHVRSVEQARQNARINGIENCRFLAGTVEALLPDLRA----------- 381

Query: 287 IHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIER 343
                   + VDPPR G D   +  ++ A P  ++Y+SCNP +L RDL  L +  + +  
Sbjct: 382 ------DIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLARDLKRLVAGGYCLVG 435

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           +   D F  T H+EC   L R
Sbjct: 436 VQPVDLFAQTHHVECVATLER 456


>gi|188588342|ref|YP_001919973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E3 str. Alaska E43]
 gi|251777708|ref|ZP_04820628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|188498623|gb|ACD51759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E3 str. Alaska E43]
 gi|243082023|gb|EES47913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 450

 Score =  251 bits (642), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 146/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--- 54
             +     YE+QL    D ++ +     V   +    +  SE   YR + EF    +   
Sbjct: 79  GCSSQTLSYEKQLQVLEDEIKDLFKEADVTTGEFLGVLGSSEQWEYRNKMEFTFGDEEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103
           GD    +    ++   M +D+          +            +     ++ E  LR  
Sbjct: 139 GDLSIGMHMRGKSFGIMTVDHCKIVDEDYRKIIRLTADYFGKQDLPYYRVMKREGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    +VT          + E          L   LH             K
Sbjct: 199 VIRKAQNTGEILVNLVTTTQIDFDLSEYVELLKSQDYKGTLVSILHTENNSFSDAVIPEK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
             +   RDY+ E+L      L ++    SF Q N      +   V       +  ++ +L
Sbjct: 259 VNVLYGRDYIQEKLL----GLNFKISPFSFFQTNTKGAESLYSLVRDFMGSSENKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    ++A +  +V+ +E+ + +VEAA+ N   N +NN + +     E  + ++  
Sbjct: 315 YCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGDVAEIIKTVK-- 372

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPRSG+    +  V  +  P I+Y+SCNP +L  DL +
Sbjct: 373 -------------DKPDIIILDPPRSGVHPKALDYVIKFNAPEIIYVSCNPKTLVTDLKV 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + I +  + D FP T H E  V L++
Sbjct: 420 LVERGYKIIQTQVKDMFPNTPHAETIVKLIK 450


>gi|229918108|ref|YP_002886754.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
 gi|229469537|gb|ACQ71309.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
          Length = 458

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 141/376 (37%), Gaps = 41/376 (10%)

Query: 13  QLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Q+  K + +R         N         I   +P +YR +++F +     ++   ++  
Sbjct: 92  QMEYKEEIVRNAFRQKTKLNVDKSDIRPTIGMEDPWYYRNKSQFPLGTRRGEIVSGLYKP 151

Query: 66  QTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            +   + I++ M               ++N L I +    R     R  + +  Y T+  
Sbjct: 152 NSNHLVPIEHCMVQQRDTTNINNAIVRILNELDIPVYDARRDTGYARTIVVRSGYNTNDV 211

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANKTKICLDRDYVDERL 171
              +V         D   +  + L + +            +    +T     ++ +DERL
Sbjct: 212 QVVLVVGHEDVPDLDELSDRIMELPNVVSFHININANRSGVIFGYRTVHIAGQEKMDERL 271

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
                 + Y     +F Q N      M  E V AA    +  +++ Y G G+  L LA +
Sbjct: 272 ----DDVHYHLSPRAFFQLNPAQTEKMYREVVEAAGLTGEERVIDAYAGVGSIGLWLAPY 327

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              +  +E+   +VE A  ++  N  N+V  V   ++ +     ++             +
Sbjct: 328 AKEIRGMEVVPEAVEDANDHMRENGYNHVTYVEGRAEHWIPRWVKD------------GW 375

Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
               I VDPPR+G+D   +  +       I+Y+SCNP +L RD   L    + +  +  +
Sbjct: 376 IPDVIVVDPPRTGMDHQLINSIISSKTKRIVYVSCNPQTLARDADQLMKAGYKVNYVQPY 435

Query: 348 DQFPYTRHMECGVLLV 363
           D FP T H+E  V+  
Sbjct: 436 DMFPQTSHVESVVVFE 451


>gi|323350973|ref|ZP_08086630.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322122697|gb|EFX94406.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 456

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 146/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   I   +  ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQKIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFSPVVRDLVAEFPELETVAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I      + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEKDIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N       N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFTNTLYETGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRANALIVDPPRTGLDDKLLETIVRYTPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   D FP+T   E  V L ++ S
Sbjct: 421 CQVYDVHYIQSVDMFPHTARTEAVVKLSKRDS 452


>gi|317498282|ref|ZP_07956581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894491|gb|EFV16674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 454

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 147/391 (37%), Gaps = 48/391 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH-YRMRAEFHIW--HDG 55
            G       YE QL  K   +R ++      ++  +I  S  +H YR + EF        
Sbjct: 81  GGCFYQTVSYENQLKIKEGMVRDLLKDHVNDDIWEEIKGSPKVHGYRNKMEFSFGDEVKD 140

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAK 103
             L   M  + T  + + I          N            + +     +R E   R  
Sbjct: 141 GPLALGMHKKNTFHDIVNITDCQIVDNDYNLIVKCALNIAQQMELPFYHKMRHEGYFRHL 200

Query: 104 LFQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAI--RLRDALHARKYQIQLIGRANK 157
           + +    +      IVT          L DA  E  +  ++   LH     +  + +A+K
Sbjct: 201 VVRRAESSGDILVNIVTTSQVEADLTKLRDALLELPLSGKIIGILHTTNDSLADVVQADK 260

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
             I   +DY  E +      L ++    SF Q N      + +         +  ++ +L
Sbjct: 261 IDILYGQDYFYEEIL----GLKFKISPFSFFQTNTLGAEVLYKTARDFVGETKDKVIFDL 316

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  + +LA    +V+ VEI + +VEAA+ N   N ++N + +              
Sbjct: 317 YSGTGTIAQMLAPVAKKVVGVEIVEEAVEAAKVNAELNGLDNCEFIAGDV---------- 366

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDSLCRDLS 333
                LK +D    +   I +DPPR G+    +  +        +LYISC P SL RDL 
Sbjct: 367 -----LKVVDELEDKPDFIVLDPPRDGIHPKAIQKIIDSYRCERMLYISCKPTSLARDLE 421

Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           IL+   + + +    DQFP T H+E   LL 
Sbjct: 422 ILADAGYKVIKATAVDQFPNTVHIETICLLE 452


>gi|167766442|ref|ZP_02438495.1| hypothetical protein CLOSS21_00948 [Clostridium sp. SS2/1]
 gi|167711851|gb|EDS22430.1| hypothetical protein CLOSS21_00948 [Clostridium sp. SS2/1]
 gi|291560880|emb|CBL39680.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
           SSC/2]
          Length = 543

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 153/393 (38%), Gaps = 53/393 (13%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH-YRMRAEFHIW--HDG 55
            G       YE QL  K   +R ++  +   ++  +I  S  +H YR + EF        
Sbjct: 79  GGCFYQTVSYENQLKIKEGMVRDLLKDYVNDDIWEEIKGSPKVHGYRNKMEFSFGDEVKD 138

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAK 103
             L   M  + T  + + I          N            + +     +R E   R  
Sbjct: 139 GPLALGMHKKNTFHDIVNITDCQIVDNDYNLIVKCALNIAQQMELPFYHKMRHEGYFRHL 198

Query: 104 LFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
           + +         ++ +T+   +A +T +   LL+      + ++   LH     +  + +
Sbjct: 199 VVRRAESSGDILVNIVTTSQVEADLTKLRDTLLELP---LSGKIIGILHTTNDSLADVVQ 255

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           A+K  I   +DY  E +      L ++    SF Q N      + +         +  ++
Sbjct: 256 ADKIDILYGQDYFYEEIL----GLKFKISPFSFFQTNTLGAEILYKTARDFVGETKDKVI 311

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LY G G  + +LA    +V+ VEI + +VEAA+ N   N ++N + +           
Sbjct: 312 FDLYSGTGTIAQMLAPVAKKVVGVEIVEEAVEAAKVNAELNGLDNCEFIAGDV------- 364

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331
                   LK +D    +   I +DPPR G+    +  +       ++YISC P SL RD
Sbjct: 365 --------LKVVDELEDKPDFIVLDPPRDGIHPKAIQKIIDFGVEQMVYISCKPTSLARD 416

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           L +     + ++R    DQFP T H+E  VLL 
Sbjct: 417 LEVFEAAGYKVKRATAVDQFPNTVHIETVVLLS 449


>gi|327461982|gb|EGF08311.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 456

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 147/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D LRQ +  F     +       I   EP++YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKEDLLRQALKKFAPAGYENYEIRPTIGMQEPLYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRAKLFQIDYL- 110
            D++   ++ Q +   + +   +    +   ++ +   ++   RL      K   +  + 
Sbjct: 141 KDEVKAGLYAQNSHYLVSLKNCLVQDKVTQQIINKVARLLGKYRLPIYDERKTAGVRTVM 200

Query: 111 ---TSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
                ++ Q  +  +  R LD           + E      +   ++  +I      +KT
Sbjct: 201 IRRARKTGQVQMIFVTGRKLDFYPVVRDLVAEFPELETIAVNYHTSKSSEI----YGDKT 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
           +I      + E +        +     +F Q N      +  E V A     +  L++ Y
Sbjct: 257 EIIWGEKAIQEGVL----DYEFSLSPRAFYQLNPEQTEVLYGEAVKALDVTKEDHLIDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G      A+    +  ++I   ++E A+ N       N      +++E       E 
Sbjct: 313 CGVGTIGFAFAKRVKSLRGMDIIPEAIEDAKRNAKRMGFGNTLYEAGTAEEIIPRWYAE- 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                       YR   + VDPPR+GLDD  +  +   A   ++Y+SCN  +L RDL  L
Sbjct: 372 -----------GYRADALIVDPPRTGLDDKLLETIVRYAPEKMVYVSCNVSTLARDLVKL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           S  + +  +   D F +T   E  V L ++ S
Sbjct: 421 SQVYDVHYIQSVDMFSHTARTEAVVKLSKRDS 452


>gi|320527936|ref|ZP_08029102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
 gi|320131562|gb|EFW24126.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
          Length = 534

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 150/385 (38%), Gaps = 33/385 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEP-IHYRMRAEFHIWHDGDD 57
              L      +Q   K ++++         +++I    + EP  +YR + +  +  + + 
Sbjct: 80  GCQLQHMDSNEQNTFKENKVKDCFHKIAGMDVEIQPIIKVEPHWNYRNKVQIPVQCNDNK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           +    +   +   ++ +     + L N L     +    +     +R  L +  + T + 
Sbjct: 140 VEMGFYAPHSNRIVQYNVCHVQTDLSNELTNYFCKQFDMLACGKDVRHVLIKHAHNTGEV 199

Query: 115 DQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
             A+V   Y     D   +  +    +++  +     +   +    K  +   R Y++E 
Sbjct: 200 MVALVVRKYPFHNSDILIKDVLVNYPQIKSLVAIVNKREDNVILDGKEILLAGRHYIEEE 259

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLA 228
           L        +R    SF Q N      +    +    G+ G+  L++LYCG G   ++ A
Sbjct: 260 LL----GCTFRISARSFYQINPYATKELYSKAIEL-AGLTGNETLIDLYCGTGTMGIIAA 314

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V  +EI   ++  A  N   N+V N+K +   + E              K I   
Sbjct: 315 KQAKQVYGIEIVADAIRDANTNAENNNVTNIKFINADASEGA------------KQIIDA 362

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLA 345
             +   + +DPPR G    T+  +   A   ++Y+SC+P +L RD+ ILS   + +E + 
Sbjct: 363 KIQADAMIIDPPRKGCSKDTIDAIVTIAPKKLVYVSCDPATLARDVKILSDNGYKLELVQ 422

Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370
             D FP T H+E   LL +     H
Sbjct: 423 PVDLFPQTVHVETVALLSKLDVDKH 447


>gi|117620248|ref|YP_858149.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561655|gb|ABK38603.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 450

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 132/383 (34%), Gaps = 37/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              +    Y  QL  K   +   +    + +  +        P  YR +A++ +      
Sbjct: 79  GCQVRPLAYPAQLKLKQALVENALEQAGLGDTTVRTILGMDSPFAYRNKAQYAVRGCDAG 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                + + + + +  D       L           +    I     +     +R  + +
Sbjct: 139 AEIGFYRKHSHDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEVNHTGCVRNLMTR 198

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL--RDALHARKYQIQLIGRANKTKICLDR 164
             + + +    +VTL      +         L     +     +          ++ L  
Sbjct: 199 KGFKSGELMVVLVTLGEELPFEAELLASLSELPVTTLVQNINEERTNRILGATNRVLLGE 258

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
             + +++      L +     SF Q N      +    L   +    + + ++YCG G  
Sbjct: 259 GVIRDKIH----ELEFEISPLSFFQNNPSQTDVLYSSALEYAELTGNETVFDIYCGIGTI 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA    +V+ +E  + ++  AR N A N + + +     +++             + 
Sbjct: 315 SLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL------------MP 362

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340
           ++         + +DPPR G D A +  +   A   ++Y+SCNP +L RDL+ L      
Sbjct: 363 ELHAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFV 422

Query: 341 IERLALFDQFPYTRHMECGVLLV 363
           ++ +   D FP++ H+E    L 
Sbjct: 423 LDEVQPVDMFPHSMHVEAVARLS 445


>gi|153835467|ref|ZP_01988134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01]
 gi|148867978|gb|EDL67175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio harveyi HY01]
          Length = 439

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 32/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L    Y+QQL  K   LRQ+M  F   ++++      E + YR RA   ++ D    
Sbjct: 90  GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGESLGYRRRARVSLFVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +N L+ E+ +T++       +L  ++ +   +  
Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKK-PEQLGHVELVLGDNGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I TL +   L +      + L     A+++Q  L       ++    D V+  +     
Sbjct: 209 CI-TLRHLNKLTEKETNTLVEL-----AKRHQASLYLMPETDQL----DLVEGEVPFYQE 258

Query: 177 -TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +      N+F Q N  +N  M+   +        + +L+L+CG GNFSL +A+    V
Sbjct: 259 AGVTVPFTPNNFIQVNQAVNQKMVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKRAKHV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE A  N + N +N+ +    + ++              +     + +F  
Sbjct: 319 VGVEGVAEMVEKAANNASLNQINSARFYHANLEQ------------DFEGQVWAAEQFDK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G       + V     I+Y+SCNP +L RD  S+L   + + +L + D FP+
Sbjct: 367 VLLDPARAGASGIIDQVSVLGARRIVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPH 426

Query: 353 TRHMECGVLLVR 364
           T H+E   L  +
Sbjct: 427 TSHLESMALFEK 438


>gi|322420278|ref|YP_004199501.1| TrmA family RNA methyltransferase [Geobacter sp. M18]
 gi|320126665|gb|ADW14225.1| RNA methyltransferase, TrmA family [Geobacter sp. M18]
          Length = 566

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 145/389 (37%), Gaps = 39/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L+  +Y  QLA K   + + +  +        +  I   + + YR  A+  +     
Sbjct: 194 GCGLMQMRYPAQLAWKKGLVTRQLRRYASLSEVTVHDTIGSPKELGYRNTAKLVVAGKHS 253

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLF 105
           D    ++ + T + + I        LIN +            +++        LLR  + 
Sbjct: 254 DPVIGIYRRNTHDVLEIGECQLHHPLINKVVKAAKAGIKKGKVQIYNPKSEMGLLRYLVV 313

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           ++      S+Q +V  +      +     A  ++ A+       Q I  +    I   +D
Sbjct: 314 RV---AEPSNQVMVVFVTTDQGYNEMHHLAKFIQQAVPEVAVVAQNINTSTGNVIFGHKD 370

Query: 166 YVD---ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
                 + L        +    +SF Q N+G    + E V   A    +  ++++YCG G
Sbjct: 371 RSITKAQTLKAFIGDRSFNLSPHSFFQVNSGAARIIYEKVRELARLTGKERVIDVYCGIG 430

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             SL LA     V+ +E  + +V  A  N A N   N       +      +  E     
Sbjct: 431 GISLFLADQAREVVGIEFVEAAVADATLNAALNLARNCHFEAGDAVHLIDEIGEE----- 485

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-T 338
                        I ++PPR G D+  +  V A     I+Y+SC+P++L RDL IL+   
Sbjct: 486 --------GGADLIVLNPPRKGCDEKVLKSVAAIKPARIIYVSCSPETLARDLDILAQLG 537

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +    +   D FP T H+E   LL R+ S
Sbjct: 538 YKTLEVHPVDMFPQTVHVEDVALLERRES 566


>gi|328466504|gb|EGF37647.1| putative RNA methyltransferase [Listeria monocytogenes 1816]
          Length = 460

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/364 (18%), Positives = 135/364 (37%), Gaps = 38/364 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    YE QLA K +++ + M      N+ +        P  YR +++  +      
Sbjct: 84  GCSLQHLSYEGQLAFKRNQVEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGK 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E       +  +R  + +
Sbjct: 144 LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR 203

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             + T Q    +VT        +         + L   +         +   ++TK    
Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGN 222
           +D +++ +      + +     SF Q N      + +  + AA    +  +++ YCG G+
Sbjct: 264 KDIIEDTIH----GIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA+    V  VEI   +++ AR N   N + N       ++E   A  +       
Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA------ 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTH 339
                       + VDPPR G D+  +  + A     ++Y+SCNP +L RD+ IL+   +
Sbjct: 374 ------GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427

Query: 340 TIER 343
             ++
Sbjct: 428 VAKK 431


>gi|110638905|ref|YP_679114.1| RNA methyltransferase [Cytophaga hutchinsonii ATCC 33406]
 gi|110281586|gb|ABG59772.1| 23S rRNA m(5)U-1939 methyltransferase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 479

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 144/400 (36%), Gaps = 52/400 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPN--LQIFRSEPIHYRMRA--------- 47
              L    Y  QL  K  +++   + +   ++P     +   +   YR +          
Sbjct: 82  GCKLQHIDYSTQLHFKQKQVKDNLERLGKIEIPEIMPIVGSGKTYEYRNKLDFTFSNKRW 141

Query: 48  ----EFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--- 100
               E  + HD           +    + I          N++ +E+ A      L    
Sbjct: 142 LLEEEMSLEHDTLYGLGFHLPGKFDRVIDISTCHLQPEPSNSIRLEVKAYALKHGLTFYN 201

Query: 101 ----RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
                  +  +   T+ + + +V + +      A +     L          +  I    
Sbjct: 202 VRAHEGLMRNLIIRTTNTHEVMVLVQFGEDNKPAIQGLLSHLITTFPQITSLVYFINTKK 261

Query: 157 -------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                     +     Y+ E +      LI+R    SF Q N+      L  V     G+
Sbjct: 262 NDTYSDLDVHVFHGPGYIQEEM----EGLIFRVGPKSFYQTNSDQAYE-LYKVTRDFAGL 316

Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G+  + +LY G G  +  +A+   +V+ +E    ++E A+ N   N+++N        K
Sbjct: 317 TGNEVVYDLYTGTGTIANFVAKKAKQVIGIEYVADAIEDAKVNSKINNIDNTLFYAGDMK 376

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325
           +              K+      R   I  DPPR+G+ +  +  +     P I+Y+SCNP
Sbjct: 377 DVLN-----------KEFIAQHQRPDVIITDPPRAGMHEDVINTLLFIGAPKIVYVSCNP 425

Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +  RDLS+L + + + R+   D FP+T H+E  VLL ++
Sbjct: 426 ATQARDLSMLDSDYEVSRIQPVDMFPHTAHVENVVLLTKR 465


>gi|327389062|gb|EGE87408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA04375]
          Length = 374

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 146/383 (38%), Gaps = 40/383 (10%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDL 58
           +   Y++QL  K D L Q +  F     +       I   EP +YR + +F      + +
Sbjct: 1   MHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKFKNQV 60

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQID 108
              ++ Q +   + +   +        +   +   +    +          +R  + +  
Sbjct: 61  KAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIMVRRA 120

Query: 109 YLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
             T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I   ++
Sbjct: 121 RKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEIIWGQE 179

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFS 224
            + E +        +     +F Q N      +  E V A     +  L++ YCG G   
Sbjct: 180 SIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGVGTIG 235

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
              A+    +  ++I   ++E A+ N      +N      +++E      +E        
Sbjct: 236 FAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE-------- 287

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342
                YR   + +DPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   + + 
Sbjct: 288 ----GYRADALIIDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDLH 343

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T   E  V L++K
Sbjct: 344 YIQSVDMFPHTARTEAVVKLIKK 366


>gi|183603351|ref|ZP_02964368.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569936|gb|EDT90464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae CDC1087-00]
          Length = 367

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 146/383 (38%), Gaps = 40/383 (10%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDL 58
           +   Y++QL  K D L Q +  F     +       I   EP +YR + +F      + +
Sbjct: 1   MHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKFKNQV 60

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQID 108
              ++ Q +   + +   +        +   +   +    +          +R  + +  
Sbjct: 61  KAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIMVRRA 120

Query: 109 YLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
             T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I   ++
Sbjct: 121 RKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEIIWGQE 179

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFS 224
            + E +        +     +F Q N      +  E V A     +  L++ YCG G   
Sbjct: 180 SIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGVGTIG 235

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
              A+    +  ++I   ++E A+ N      +N      +++E      +E        
Sbjct: 236 FAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE-------- 287

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342
                YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   + + 
Sbjct: 288 ----GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDLH 343

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D FP+T   E  V L++K
Sbjct: 344 YIQSVDMFPHTARTEAVVKLIKK 366


>gi|225568809|ref|ZP_03777834.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM
           15053]
 gi|225162308|gb|EEG74927.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM
           15053]
          Length = 460

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 142/396 (35%), Gaps = 51/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH--YRMRAEFHIW--HDG 55
             T     YE+QL  K  +++ MM      +   +  +  P    YR + EF     +  
Sbjct: 81  GCTYQNLPYEEQLKLKESQVKSMMDEAVDGDYVWEGIKPSPARQEYRNKMEFSFGDEYKD 140

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAK 103
             L   M  + +  + + +            ++   +   +   L            R  
Sbjct: 141 GPLALGMHKRGSFHDIVNVADCRIVDEDYRKILACTLDCAKKSGLPYYHRMKHTGFFRHL 200

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----------RLRDALHARKYQIQLIG 153
           L +    T +    IVT   +       +E             ++   LH +   +  + 
Sbjct: 201 LVRKAVNTGEILIDIVTTTEYDFESGFGQEYWAGQLLDLPLDGKIAGILHTKNDSVADVV 260

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
           +   T I   +D   E L      + ++    SF Q N+     + E         +  +
Sbjct: 261 KDEGTDIIYGQDCFYEELL----GMKFKITPFSFFQTNSLGAEVLYEMARTYIGDTKDKV 316

Query: 214 L-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  + +LA    RV+ VEI + +V AA+ N   N ++N              
Sbjct: 317 IFDLYSGTGTIAQILAPVAKRVVGVEIVEEAVAAAKENAKLNGLDNCTFWSGDV------ 370

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                    LK ID        I +DPPR G+    +  +       ++YI+C P SL R
Sbjct: 371 ---------LKVIDELGEVPDLIVIDPPRDGVHPKALEKITNFGVERMVYIACKPTSLAR 421

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +L    + +ER+   D FP T H+E  VLL  K
Sbjct: 422 DLEMLQGRGYEVERMGCVDLFPGTVHVETVVLLSHK 457


>gi|294101799|ref|YP_003553657.1| RNA methyltransferase, TrmA family [Aminobacterium colombiense DSM
           12261]
 gi|293616779|gb|ADE56933.1| RNA methyltransferase, TrmA family [Aminobacterium colombiense DSM
           12261]
          Length = 464

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 148/391 (37%), Gaps = 48/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF------QVPNLQIFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL  K   + +            +    I   +   YR +A F + ++ 
Sbjct: 88  GCQLQHCSYDKQLEIKRTIVEEAFSRVAHIPVRNILAPCIASPKEWGYRNKASFPVRNNA 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEP--------LLRAKL 104
                  F +++   + ID        +N +    I+ +  I L P        LLR  +
Sbjct: 148 GKTDIGFFRRRSHSIIPIDTCPVLEPALNHMLSYFIDSLECINLPPYDEKKHSGLLRHVI 207

Query: 105 FQIDYLTSQSDQAIVTL-----IYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRAN 156
           F+    + +    +V          + ++  W+            L  +           
Sbjct: 208 FRCGSFSKELLACLVVRKSLSSSEMKRVEQQWQSFQFPEFSFVGILENKNISPGNTILGQ 267

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM-LEWVLAATKGIQGDLLE 215
            ++    R+++ E L        +     +F Q N+     +        +   QG  LE
Sbjct: 268 NSRSVQGREWLREFLNSKE----FHFDGTAFFQVNSYQAARLFTYSANCFSDKGQGRALE 323

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G  SL LA  FD ++ VE    +VEA R N+  N  +NV      +++       
Sbjct: 324 LYSGVGALSLFLASKFDNLVTVEDWPSAVEAMRKNLELNDFHNVSPHTGRAEDV------ 377

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333
                    I      F ++ +DPPRSG +   +  +  +    ILY++CNP +L RD++
Sbjct: 378 ---------IFHLDGPFNSVILDPPRSGCNRQVIQRILEWKPQQILYVACNPATLARDIA 428

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           +L    + +E+L  FD FP T H+EC  LL 
Sbjct: 429 LLYEGGYRLEKLQPFDMFPQTVHVECVALLE 459


>gi|303265405|ref|ZP_07351310.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS397]
 gi|302645057|gb|EFL75299.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS397]
          Length = 431

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 143/383 (37%), Gaps = 40/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 66  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 125

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 126 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 185

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 186 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 244

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 245 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKENHLIDAYCGV 300

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 301 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 356

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 357 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 408

Query: 339 HTIERLALFDQFPYTRHMECGVL 361
           + +  +   D FP+T   E  V 
Sbjct: 409 YDLHYIQSVDMFPHTARTEAVVK 431


>gi|198274964|ref|ZP_03207496.1| hypothetical protein BACPLE_01123 [Bacteroides plebeius DSM 17135]
 gi|198272411|gb|EDY96680.1| hypothetical protein BACPLE_01123 [Bacteroides plebeius DSM 17135]
          Length = 472

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 146/399 (36%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFH------------- 50
            YE+QL  K  ++   +       L  FR      +   YR + EF              
Sbjct: 91  SYEEQLKYKQKQVFDNLTRIGKVELPEFRPILGSEKTRFYRNKLEFTFSNKRWLTEEEVK 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLR 101
             + +D  +           + + ID       + N +   +                  
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAVRDYAYAHNFPFFDLRTQE 210

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-----LIGRAN 156
             L  I   TS + + +V L   ++ DD  R     +   +     QI      +  + N
Sbjct: 211 GLLRNIMIRTSSTGELMVVL-QCKVTDDEGRRKMEEILQFMADSFPQITSLMYVINNKCN 269

Query: 157 KT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
            T      ++    D++ E +      L ++    SF Q N+    + L  V     G+ 
Sbjct: 270 DTIGDLDVEVFKGNDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  +AR   +V+ +E    ++E A+ N A N ++N        K+
Sbjct: 325 GNELVYDLYTGTGTIANFVARQARKVVGIEYVPEAIEDAKVNSALNGIDNTLFYAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPD 326
                          D      R   I  DPPR+G+ +  + ++ A     I+Y+SCNP 
Sbjct: 385 ILT-----------NDFIAEHGRPDVIITDPPRAGMHNDVIDVILAAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + +  +   D FP+T H+E  V L R+
Sbjct: 434 TQARDLQLLDGKYKVTAVQPVDMFPHTHHVENVVQLERR 472


>gi|303270015|ref|ZP_07355742.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS458]
 gi|302640448|gb|EFL70868.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae BS458]
          Length = 446

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 143/383 (37%), Gaps = 40/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKENHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMECGVL 361
           + +  +   D FP+T   E  V 
Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVK 446


>gi|153955290|ref|YP_001396055.1| RNA methyltransferase [Clostridium kluyveri DSM 555]
 gi|219855711|ref|YP_002472833.1| hypothetical protein CKR_2368 [Clostridium kluyveri NBRC 12016]
 gi|146348148|gb|EDK34684.1| Predicted RNA methyltransferase [Clostridium kluyveri DSM 555]
 gi|219569435|dbj|BAH07419.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 453

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 149/392 (38%), Gaps = 49/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM-----LAFQVPNLQIFRSEPIHYRMRAEFHIW---H 53
                   Y++Q+  K  ++  +        F+   ++    E   YR + EF       
Sbjct: 79  GCVSQFIPYDKQIELKEQQVLDLFHSADIRDFKFLGIEK-SPEEFEYRNKMEFSFGDEEK 137

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRL--------EPLLRA 102
           DG+    +    +    + +D          L+   +++    ++L           LR 
Sbjct: 138 DGELTLGMHVKGKGFSIVNVDECKIVDKDFTLVLDRVVKYFRKMKLPYYRVRSHNGYLRN 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156
            + +    T +    IVT            E         +L   +H     +  + + +
Sbjct: 198 LVLRKGKNTGELLINIVTTSQIEFDFSEITEILKGLEYKGKLSGIVHTINDSLSDVVQID 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLE 215
           K ++   RDY+ E +      L ++    +F Q N+     +   V      +    + +
Sbjct: 258 KLEVLYGRDYIMEEIL----GLKFKISPKTFFQTNSKGAEKLYGIVKEFLGDVSLKTVFD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCG G  S ++A    +V+ VE+ + +V++A  N   N + N K +     +  + +  
Sbjct: 314 LYCGTGTISQIVASSAKKVIGVELVEEAVKSANENACLNEIENCKFIAGDVAKVVKTLN- 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I +DPPR G+    +  +  +    I+Y+SCNP +L  DL 
Sbjct: 373 --------------DKPDLIILDPPRPGIHPKALRQIIDFNVNEIIYVSCNPKTLVEDLK 418

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L    + I+++ L D FP+T H+EC  L+ R
Sbjct: 419 VLIDGGYRIDKVKLMDMFPHTSHVECVALMSR 450


>gi|167631004|ref|YP_001681503.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Heliobacterium
           modesticaldum Ice1]
 gi|167593744|gb|ABZ85492.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Heliobacterium
           modesticaldum Ice1]
          Length = 490

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 144/423 (34%), Gaps = 74/423 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHD-- 54
              L +  Y  Q   K + +R  +              +  + P  YR R + H+  +  
Sbjct: 79  GCQLQMIDYPAQCRVKTEGVRDALRRLGRLENVPVGEIVGAANPWRYRNRVQMHLRREAG 138

Query: 55  --GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----LEPLLRAKLFQI 107
             G  L    +   + E +  D           ++  +   +       E  +R  + + 
Sbjct: 139 APGKPLQMGYYRLSSHELVENDECPLLPESFPPVLKALRRHLPEIDPAGELPIRHVVLKT 198

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK--------------------- 146
                ++ + ++ L++      AWR+    L   L                         
Sbjct: 199 TTPLERAGEMMLILVFS-AWRSAWRKAVGDLAKRLMGEGATGEGATGEGATGEGATGEGA 257

Query: 147 ------------YQIQLIGRANKTKICLDRDY-------VDERLTVA-GRTLIYRQIENS 186
                         + +     K    L  DY         ERLT      L       S
Sbjct: 258 TGEGLTGERYNLVSLYVNVNEKKEGEVLGPDYPFHVSKPGKERLTDYLPGGLQIEVGPAS 317

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           FTQ N      +L  +     G+ G   +++ YCG G  SL LAR   RV+ +E    +V
Sbjct: 318 FTQVNPRQTE-ILYQLTKEVCGLTGRETIIDAYCGAGTISLFLARDCARVIGIEEVPMAV 376

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E A+ N   N + NV+ +    ++   ++               +     I +DPPR G 
Sbjct: 377 EDAQKNAEQNGITNVEFLTGKVEDLLPSLLE------------RACVPDVIVLDPPRRGC 424

Query: 305 DDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
               +  +       I+Y+SC+P SL RD + L+     ++++   D FP T H+E  VL
Sbjct: 425 HARVIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVETVVL 484

Query: 362 LVR 364
           + R
Sbjct: 485 MSR 487


>gi|298373691|ref|ZP_06983680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274743|gb|EFI16295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 477

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/405 (20%), Positives = 153/405 (37%), Gaps = 54/405 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHI----W 52
                I  YE+QL  K  ++   +L             +   +   YR + EF      W
Sbjct: 85  GCKWQILPYERQLFYKQKQVEDSLLRIGKIELPAVLPIVGSEQEYFYRNKLEFTFSNRKW 144

Query: 53  HDGDDLYHI-------MFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
               D           M            + + I+       + N++  E+        L
Sbjct: 145 LTNLDESEGIEANPKSMNGLGFHIPGMFDKVLDINKCWLQDDISNSIRNEIRRYALNNNL 204

Query: 100 ----LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
               LR +   L  +   T+ + + +V +++     +        ++         + ++
Sbjct: 205 SFFDLRRQEGFLRTLMIRTASTGELMVLVVFFYDDKEQINNLLSYIKKMFPQITSLLYVV 264

Query: 153 GRA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA- 204
            R         KI L   R+Y+ E +      L ++    SF Q N+    ++ + V   
Sbjct: 265 NRKANDTITDQKIELFDGREYIVEEM----EGLRFKIGAKSFYQTNSRQAYNLYKVVRDF 320

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A    +  + +LY G G  +  +AR   +V+ +E    ++E A+ N A N + N +    
Sbjct: 321 ARIDDRMLVYDLYTGTGTIANFVARKAKKVIGIEYVPEAIEDAKENSAINGIVNTEFFAG 380

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYIS 322
             K+                +D H  +   I  DPPR+G+ +  +   ++ + P I+Y+S
Sbjct: 381 DMKDVLSQSF----------VDYHG-QPDVIITDPPRAGMHEDVIKTILLASAPRIVYVS 429

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           CNP +  RDL +L   + I  +   D FP+T H+E  VLL ++ +
Sbjct: 430 CNPATQARDLQMLDADYKIVAVQPVDMFPHTHHVENVVLLEKRKT 474


>gi|19310570|gb|AAL85018.1| unknown protein [Arabidopsis thaliana]
          Length = 564

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 144/423 (34%), Gaps = 78/423 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50
                   YE QL  K +++ +++          P L+I            HYR + EF 
Sbjct: 157 GCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFHYRNKMEFS 216

Query: 51  I-------------WHDGDDLYHIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIR 95
                           DG   + +         + + +D  +  S   N ++  +    R
Sbjct: 217 FGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAVQDCWR 276

Query: 96  LEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAIRL--- 138
              L             L+  + +    + + S + +V  +      +  +    R+   
Sbjct: 277 DPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVDRISSI 336

Query: 139 ---RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
                 ++     +       K      +D + E L    R L ++   NSF Q N    
Sbjct: 337 PQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVL----RGLTFQISANSFFQTNTHQA 392

Query: 196 VHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +L  ++  + G++GD    +L+L+CG G   L LAR    V   E+   ++  A  N 
Sbjct: 393 E-VLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNA 451

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATV 309
             N + N   ++    +  +            D   +  +   +  DP R G+       
Sbjct: 452 QINGIENATFIQGDLNKIGE------------DFGNNFPKPDIVISDPNRPGMHMKLIKF 499

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360
            +    P I+Y+SCNP +  RDL  L            + +  +   D FP+T H+EC  
Sbjct: 500 LLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVC 559

Query: 361 LLV 363
           LL 
Sbjct: 560 LLE 562


>gi|42565079|ref|NP_188767.2| RNA methyltransferase family protein [Arabidopsis thaliana]
 gi|9280234|dbj|BAB01724.1| RNA methyltransferase-like protein [Arabidopsis thaliana]
 gi|332642969|gb|AEE76490.1| RNA methyltransferase family protein [Arabidopsis thaliana]
          Length = 554

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 144/423 (34%), Gaps = 78/423 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50
                   YE QL  K +++ +++          P L+I            HYR + EF 
Sbjct: 147 GCKTQNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFHYRNKMEFS 206

Query: 51  I-------------WHDGDDLYHIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIR 95
                           DG   + +         + + +D  +  S   N ++  +    R
Sbjct: 207 FGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAVQDCWR 266

Query: 96  LEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAIRL--- 138
              L             L+  + +    + + S + +V  +      +  +    R+   
Sbjct: 267 DPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVDRISSI 326

Query: 139 ---RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
                 ++     +       K      +D + E L    R L ++   NSF Q N    
Sbjct: 327 PQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVL----RGLTFQISANSFFQTNTHQA 382

Query: 196 VHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +L  ++  + G++GD    +L+L+CG G   L LAR    V   E+   ++  A  N 
Sbjct: 383 E-VLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNA 441

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATV 309
             N + N   ++    +  +            D   +  +   +  DP R G+       
Sbjct: 442 QINGIENATFIQGDLNKIGE------------DFGNNFPKPDIVISDPNRPGMHMKLIKF 489

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360
            +    P I+Y+SCNP +  RDL  L            + +  +   D FP+T H+EC  
Sbjct: 490 LLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVC 549

Query: 361 LLV 363
           LL 
Sbjct: 550 LLE 552


>gi|21672850|ref|NP_660915.1| RNA methyltransferase [Chlorobium tepidum TLS]
 gi|50401598|sp|Q8KGF9|Y009_CHLTE RecName: Full=Uncharacterized RNA methyltransferase CT0009
 gi|21645898|gb|AAM71257.1| RNA methyltransferase, TrmA family [Chlorobium tepidum TLS]
          Length = 483

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 92/408 (22%), Positives = 160/408 (39%), Gaps = 63/408 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEP--IHYRMRAEFHIWH--- 53
               +   YE QL  K  ++   +     F+ P+++   + P  +HYR + EF   +   
Sbjct: 92  GCKWMHVSYEAQLRYKHKKVTDSLEHIGGFESPDVRPVLAAPDALHYRNKVEFSCSNMRY 151

Query: 54  ------------DGDDLYHIMFDQQTKERM-RIDYFMPGSLLINAL-----------MIE 89
                                      E++  +D        +N +            +E
Sbjct: 152 LLQSEIDSDQLAKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVLNVLRDFAIERGLE 211

Query: 90  MMATIRLEPLLRAKLFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD 140
             A    E  LR  + +         ++ +TS  D+A++  +  R L+ A  E  + L +
Sbjct: 212 PYAAKAHEGYLRNLMLRYSERHEQLMVNIVTSWYDKALMQALKER-LEAAMPEQQMTLLN 270

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            +  RK     +    +  +     YV ERL      L +R   NSF Q N      + +
Sbjct: 271 NVTTRK---NTVATGEQEYVISGDGYVTERLG----DLDFRISANSFFQTNTRQAETLYD 323

Query: 201 WVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            ++A       D + +LYCG G  +L LARH  + + +E+ + +V+ A  N   N ++N 
Sbjct: 324 QIIAVGGITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNT 383

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-H 317
              +   K F  AM+   E            + + I  DPPR+G+    +  M++  P  
Sbjct: 384 VFFQADLKNF-HAMQEALE---------PYAKPRIIVTDPPRAGMHPKALDTMLKLQPER 433

Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           I+Y+SCNPD+L RD   ++   + +      D FP T H+E      R
Sbjct: 434 IVYVSCNPDNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFER 481


>gi|325508852|gb|ADZ20488.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
           acetobutylicum EA 2018]
          Length = 453

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 155/385 (40%), Gaps = 47/385 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAE--FHIWHDGDDLYHIM 62
            YE+QL  K   + ++    ++   +    +   E   YR + E  F  +  G +L   M
Sbjct: 86  PYEKQLEFKEREVLKLFKDAKIEGFEYLGILGSPEKEEYRNKMEYTFGDFVKGGELTLGM 145

Query: 63  FDQQTK-ERMRIDYFMPGSL---LINALMIE--------MMATIRLEPLLRAKLFQIDYL 110
             + +    +  D          +I   ++E        +   ++    LR  + +    
Sbjct: 146 HAKNSGFSIVNTDKCNIVDEDFRIILKTVVEYFRKKDLPIYKVMQHVGYLRNLVVRKAKN 205

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANKTKICLDR 164
           T +   A+VT            E          L+  LH     +  + R +K      +
Sbjct: 206 TGEILIALVTTSQVDFDLTELTEILKSINYLGELKGILHVINDGLADMVRGDKIVTLFGQ 265

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
           DY+ ER+      L ++    SF Q N+     +   VL     +    + +LYCG G  
Sbjct: 266 DYITERIL----DLKFKISLFSFFQTNSKGAEKLYSEVLEFLGDVSNKTVFDLYCGTGTI 321

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
             + ++  ++V+ +E+ + +VEAA+ N   N+++N   +     +    ++         
Sbjct: 322 GQLASKKAEKVIGIELIEEAVEAAKENTKLNNISNCSFIAGDVAKVITEIKE-------- 373

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THT 340
                  +  TI +DPPR G+    +  V  +  P I+Y+SCNP +L  DL +L    + 
Sbjct: 374 -------KPDTIILDPPRPGVSPNAMKYVIKFNAPEIVYVSCNPKTLVNDLGVLRAYGYE 426

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +E++ + D FP T H+E  VLL RK
Sbjct: 427 VEKVKIVDMFPGTGHVETVVLLQRK 451


>gi|312877074|ref|ZP_07737046.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796124|gb|EFR12481.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 451

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 154/386 (39%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L+  +Y+ QL  K   +          + +I        P  YR +    +  D   
Sbjct: 80  GCHLMHAKYQHQLKLKKLLVEDAFRRIGKLSPKINDVIGMENPFRYRNKTALPVGGDYVK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
                + + T + + IDY +               LI    IE+    + + +LR  + +
Sbjct: 140 PQIGFYRKMTHDIVPIDYCLIQHEFCDDVIKGMKELIKKHKIEVYDERKHQGVLRHIVVR 199

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
             +     D+ ++ L+  + + +  +     + D     K     +       I  + D 
Sbjct: 200 NSFA---FDEMMLILVCTK-VPENLKAIKKDIIDKFPKIKSFFVNLNPKRTNVILGEEDI 255

Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           +      +      L +     SF Q N+     +   V+   K ++ + + ++Y G G 
Sbjct: 256 LIWGSSTIKDKIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLKNVKAEIVFDIYSGIGT 315

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            S+ +A    +V A+E+ + +VE A+ N   N+++N++ +  S++          E  RL
Sbjct: 316 ISMFVAPFCKKVYAIELVRDAVEDAKKNSKNNNISNIEFISGSAE---------IEIPRL 366

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339
               I     + + +DPPRSG +   +  +     P+I+Y+SCNP +L RD +IL    +
Sbjct: 367 MKSGII---PQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSNILCSNGY 423

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +  +   D FP T H+EC  L  ++
Sbjct: 424 EVVEVQPVDMFPQTFHVECVALFKKR 449


>gi|83590746|ref|YP_430755.1| RNA methyltransferase [Moorella thermoacetica ATCC 39073]
 gi|83573660|gb|ABC20212.1| 23S rRNA m(5)U-1939 methyltransferase [Moorella thermoacetica ATCC
           39073]
          Length = 473

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 136/416 (32%), Gaps = 75/416 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  QL  K   +   +              +  + P  YR +   H+     
Sbjct: 76  GCDLQHLDYRAQLHWKRRLVIDALQRLGHLRDIPVLPVLGMANPWGYRNKVRLHVRR--- 132

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                 +   + E           LL   L+    A +RL P L   L  +      +  
Sbjct: 133 -GRLGFYRPGSHELAPFSCCP---LLPPGLLKAARAIVRLLPELPPGLQHVTLRQGLATG 188

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK----------------- 159
            ++ ++         RE A +L          + L G                       
Sbjct: 189 ELLVVLEALPGWQGDRELAEKLAGRFPELVGVVSLAGGGRSRSGPKDFAGEPALECSGWV 248

Query: 160 --------------------------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                                         RDY++ERL      L +     +F Q N+ 
Sbjct: 249 KTGGKEARRARYQEGFVPRRLGGRPFTLYGRDYLEERLG----DLRFYISATTFFQVNSA 304

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
               +            G+ +L+ YCG+G  +L L+R   RV  VE+   ++  AR N  
Sbjct: 305 QAEVLYNKAATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEGVEVVPEAIVDARRNSI 364

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N++ NV     +++     +                YR + I +DPPR+G D   +  V
Sbjct: 365 LNNLANVHFRTGAAEAVLPRLAG------------KGYRPEVIILDPPRAGCDRRVLAAV 412

Query: 313 QAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
                  ++YISCNP +L RDL+ L         +   D FP+T H+EC   LV++
Sbjct: 413 ATMEPRRVVYISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVKE 468


>gi|15894714|ref|NP_348063.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
           acetobutylicum ATCC 824]
 gi|50401651|sp|Q97J51|Y1435_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C1435
 gi|15024377|gb|AAK79403.1|AE007655_1 S-adenosylmethionine-dependent methyltransferases [Clostridium
           acetobutylicum ATCC 824]
          Length = 456

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 155/385 (40%), Gaps = 47/385 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAE--FHIWHDGDDLYHIM 62
            YE+QL  K   + ++    ++   +    +   E   YR + E  F  +  G +L   M
Sbjct: 89  PYEKQLEFKEREVLKLFKDAKIEGFEYLGILGSPEKEEYRNKMEYTFGDFVKGGELTLGM 148

Query: 63  FDQQTK-ERMRIDYFMPGSL---LINALMIE--------MMATIRLEPLLRAKLFQIDYL 110
             + +    +  D          +I   ++E        +   ++    LR  + +    
Sbjct: 149 HAKNSGFSIVNTDKCNIVDEDFRIILKTVVEYFRKKDLPIYKVMQHVGYLRNLVVRKAKN 208

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANKTKICLDR 164
           T +   A+VT            E          L+  LH     +  + R +K      +
Sbjct: 209 TGEILIALVTTSQVDFDLTELTEILKSINYLGELKGILHVINDGLADMVRGDKIVTLFGQ 268

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
           DY+ ER+      L ++    SF Q N+     +   VL     +    + +LYCG G  
Sbjct: 269 DYITERIL----DLKFKISLFSFFQTNSKGAEKLYSEVLEFLGDVSNKTVFDLYCGTGTI 324

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
             + ++  ++V+ +E+ + +VEAA+ N   N+++N   +     +    ++         
Sbjct: 325 GQLASKKAEKVIGIELIEEAVEAAKENTKLNNISNCSFIAGDVAKVITEIKE-------- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THT 340
                  +  TI +DPPR G+    +  V  +  P I+Y+SCNP +L  DL +L    + 
Sbjct: 377 -------KPDTIILDPPRPGVSPNAMKYVIKFNAPEIVYVSCNPKTLVNDLGVLRAYGYE 429

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +E++ + D FP T H+E  VLL RK
Sbjct: 430 VEKVKIVDMFPGTGHVETVVLLQRK 454


>gi|309776573|ref|ZP_07671553.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915674|gb|EFP61434.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 456

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 157/393 (39%), Gaps = 41/393 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
           S  LL    + Q   K   ++++    +   LQ    +   +P HYR +       D   
Sbjct: 80  SCQLLHMSTQGQQKFKNRSMQELCRKAKGLRLQTEDIVSMEKPWHYRNKIIIGFQRDKQR 139

Query: 58  LYHIMFDQQ-TKERMRIDYF---MPGSLLINALMIEMMATIRLEP--------LLRAKLF 105
                F ++ +   +              + A ++E+M  +R+EP        LLR  + 
Sbjct: 140 HIQAGFYEEFSHRIIPYKQCLLHPKACDDVVATIVELMGKLRIEPYEEDTRRGLLRHVVL 199

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +   ++    Q +V  + +  +  A +     LR         +Q +    KT + L  +
Sbjct: 200 RYGAVSK---QLMVVFVLNSPVFPARKNFIQELRKRHPEITTIVQNVNT-RKTSVVLGDE 255

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGN 220
               Y    +      + +R    SF Q N      +    +       +  +L+ YCG 
Sbjct: 256 ERVLYGPGYIEDVLCGMTFRISAKSFYQINHEQTEVLYRRAVELLKLSGRETVLDAYCGI 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + +++   +V+ VEI + +VE AR N   N ++N++ V   +  +   +  E++  
Sbjct: 316 GTIGMYVSQFVKQVVGVEINRDAVEDARINAKINRISNIRFVCEDAGRYMTRLAAEKK-- 373

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST- 337
                     R   + +DPPRSG  +  +  +V+  P  +LYISCNP +  RDL +L   
Sbjct: 374 ----------RLDVVIMDPPRSGSSEEFIKSLVRMKPRQVLYISCNPQTQVRDLQMLERM 423

Query: 338 THTIE-RLALFDQFPYTRHMECGVLLVRKPSGW 369
            + ++  +   D FP+T H+E   L+ +   G 
Sbjct: 424 GYRVDGNMVPVDLFPHTFHVETVALMSKVNPGK 456


>gi|237735640|ref|ZP_04566121.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381385|gb|EEO31476.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 383

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 150/389 (38%), Gaps = 48/389 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
           S   +   Y++QL  K D  ++++   ++   +    I    P  YR +      H    
Sbjct: 16  SCKYINTDYQRQLKIKTDYCKKLLKDNKLDMYEVKDTIGMGHPYEYRNKIIVAFNH---R 72

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                +++ + + +  D  +    L           +    + +    R   LLR  L +
Sbjct: 73  YEFGFYEEDSHKIIPYDRCLLHEELSDMIIKKIQSLLKRYRVSIYDENRNRGLLRHVLIR 132

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTK 159
              +T   DQ +V L+ +  +    +     L     + K  +  + +        N+ K
Sbjct: 133 RALVT---DQTMVVLVCNDNVFKGSKNFCNELIKNFPSIKTVVLNVNKRKTSVVLGNEEK 189

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYC 218
           I   + ++ + L      L ++    SF Q N      +    L       Q  +++ YC
Sbjct: 190 ILYGKGFIVDELC----GLKFKISPKSFYQINHQQCELLYSKALDLLNLTGQERIIDAYC 245

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   +++A     V  VE+ K +V+ A  N   N + N+K +   +  F   + ++++
Sbjct: 246 GIGTIGMIVANRTKEVTGVELNKDAVKDAINNAKMNKIENIKFINDDASAFMIKLAKQKQ 305

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                       +   + +DPPRSG     +  V+      ++YISC+P +  RD+   +
Sbjct: 306 ------------KVDCVIMDPPRSGSTQEFMDAVKILNPKQVVYISCDPSTQVRDIKYFA 353

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364
              +  E +   D FP+T H+E  VLL +
Sbjct: 354 KIGYRGEVMYPVDMFPHTSHVETIVLLSK 382


>gi|291521011|emb|CBK79304.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7]
          Length = 463

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 85/407 (20%), Positives = 158/407 (38%), Gaps = 64/407 (15%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMM--------------LAFQVPNLQIFRSEPIHYRMR 46
            G +     Y++QL  K  ++++++                  V        +   YR +
Sbjct: 79  GGCMYQTMGYDEQLKMKAGQVKKLLDTAISSAGQVDAEGKPDYVFEGITGSPKQWAYRNK 138

Query: 47  AEFHIW---HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP----- 98
            EF       DG     +     T + + +D           ++  ++      P     
Sbjct: 139 MEFSFGDDHLDGPLTLGLHKKASTYDILTVDDCKIVHDDFTTVLKTVLDYFTEHPMPYYK 198

Query: 99  ------LLRAKLFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
                  LR  L +         +  +T+  ++  +T +  RLLD    +   R+   +H
Sbjct: 199 KMKHTGYLRHLLVRRSETTGEMLVHLVTTSQEECDLTELTQRLLD---LQLEGRIVGIMH 255

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
                +  + ++++T+I   +DY  E +      L ++    SF Q N      + +   
Sbjct: 256 IINDTLADVVQSDETRILYGQDYFYEHIL----GLKFKISTFSFFQTNTLGAELLYDIAR 311

Query: 204 AATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   + +LY G G  + +LA    +V+ VEI + +VEAA+ N   N ++N + +
Sbjct: 312 SYIGDTKDMTVFDLYSGTGTIAQILAAVAKKVVGVEIVEEAVEAAKVNAGLNQLDNCEFI 371

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320
                              LK +D    +   I +DPPR G+    +  +  Y  P+++Y
Sbjct: 372 AGDV---------------LKVLDTIEDKPDYIVLDPPRDGIHPKALDKIIDYQVPNMVY 416

Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           ISC P SL RDL +L    + +++    D FP T H E   LL +KP
Sbjct: 417 ISCKPTSLARDLGVLIERGYKVKKTHCVDMFPGTVHCETVCLLSKKP 463


>gi|255305404|ref|ZP_05349576.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           ATCC 43255]
          Length = 451

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/393 (21%), Positives = 146/393 (37%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54
             TLL   YE+QL  K  ++  + L      FQ   ++    E  +YR + E  F     
Sbjct: 79  GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 137

Query: 55  GDDLYHIMFDQQTKERMR-IDYFMPGSL---LINALMIEMMAT--------IRLEPLLRA 102
              L   +  +     ++ ++  M        I A  +E            +  +  LR 
Sbjct: 138 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILASSVEFFDEKKLPYYRTMNHKGYLRH 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156
            + +    T++    IVT        + +++  +       L   LH     +    + +
Sbjct: 198 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDLLLGIDLKAELVGVLHTINDGLADAVQCD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           + ++   RDY+ E +      L ++    SF Q N      +              ++ +
Sbjct: 258 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +  + ++ 
Sbjct: 314 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I VDPPR G+    +  +  +    I+YISCNP SL  DL 
Sbjct: 373 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 418

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
                 + I+ +   D FP T H+E   LL RK
Sbjct: 419 DFKGYGYEIKMVKCMDMFPNTPHVETVALLRRK 451


>gi|254496451|ref|ZP_05109328.1| 23S rRNA 5-methyluridine methyltransferase [Legionella drancourtii
           LLAP12]
 gi|254354307|gb|EET12965.1| 23S rRNA 5-methyluridine methyltransferase [Legionella drancourtii
           LLAP12]
          Length = 444

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 148/376 (39%), Gaps = 30/376 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L     + Q+  K ++L  ++  +     Q   +     P +YR +A   + +    
Sbjct: 85  GCSLQHLSAQDQIHFKQEQLLDLLERYGHTQPQTVLAPLVANPWNYRNKARLSVRYVEKK 144

Query: 58  LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
              ++  ++         I      +  I+A +I +   I      +  + QI+      
Sbjct: 145 QASMVGFRERNSPRFITDISQCPVLNARIDADIIPLRHLIDSMEE-KHCIAQIEVAAGDE 203

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           +  ++     R L        +R++      +Y I L      +  C    +  E LT A
Sbjct: 204 EIGLI----FRNLSALTPNDELRIQQFAEQYQYTIFLQPSGPDSVYCFYPPHASEFLTYA 259

Query: 175 GRTL--IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
                  Y      FTQ N+ +N  M+   L        D +L+L+CG GNFSL +A+  
Sbjct: 260 LPDYQITYSFHPTDFTQVNSELNRAMVALALQLMDLKSTDIVLDLFCGLGNFSLPMAKFC 319

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +VL VE +   VE A  N  AN+++NV     +  +  +  +            +    
Sbjct: 320 AKVLGVEGSAMMVERAYMNAKANNLSNVDFYAANLDDVNEVQK------------LVQQT 367

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFD 348
              + +DPPRSG  +    +    P  I+Y+SCNP +L RD  IL     + + +  + D
Sbjct: 368 CNKVLIDPPRSGALELVKQIDTLNPERIVYVSCNPVTLARDTDILVNQKGYVLIKAGVMD 427

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   L  +
Sbjct: 428 MFPHTAHVESIALFEK 443


>gi|145220570|ref|YP_001131279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206734|gb|ABP37777.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 484

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 88/408 (21%), Positives = 148/408 (36%), Gaps = 55/408 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPN--LQIFRSEPIHYRMRAEFHIWHDG- 55
              L+  +Y  QL  K  +++  ++    F  P     +    P+HYR + EF       
Sbjct: 86  GCKLMHIRYPAQLRYKEKKVQDALIHIGGFSEPPMLPALGAPSPVHYRNKIEFSCSGKRY 145

Query: 56  -------------DDLYHIMFDQQTKERMRIDY--FMPGSLLIN---ALMIEMMATIRLE 97
                           + + F         ID       +  +N    L  +      +E
Sbjct: 146 LRPEELSMDELLQPKNFALGFHAPGNFEKVIDTARCHLATEEMNSVLRLTRDFALENAME 205

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH-----A 144
           P         LR  + +    T +    IVT  Y   L +++          +       
Sbjct: 206 PYMAREHTGFLRNLVVRSSVHTGEVMVNIVTSWYDGELMESYSAHLQSGMQGVPLTLVNN 265

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
              +   +   +     L    + E+L +    L +R   NSF Q N      +   +  
Sbjct: 266 VTNRRNTVATGDVEYTILGSGTISEKLGL----LEFRISANSFFQTNTLQAEALYGRIQD 321

Query: 205 ATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A +   GD + +LYCG G  +L LARH +R + +E+ + S++ AR N  +N + N    +
Sbjct: 322 ACELRAGDRVYDLYCGTGTITLWLARHAERAIGLEVVESSIQDARSNAESNGIGNAYFFQ 381

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
              K+    M R  E  R             I  DPPR+G+    +  +       I+Y+
Sbjct: 382 TDLKDLGAMMERLEEHGR----------PDVIVTDPPRAGMHPKALETMLKLGARRIVYV 431

Query: 322 SCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           SCNP SL RD   ++   + +  +   D FP+T H+E         SG
Sbjct: 432 SCNPASLARDGKEIAGAGYRLVSVEPVDMFPHTAHIESVACFDYSASG 479


>gi|253583643|ref|ZP_04860841.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium varium ATCC
           27725]
 gi|251834215|gb|EES62778.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium varium ATCC
           27725]
          Length = 451

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 162/384 (42%), Gaps = 34/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56
                + +Y+ QL  K   +  ++      +       I   +P HYR +          
Sbjct: 81  GCDFGMLKYDAQLKYKKLMVEDVLKKIGKMDNISVADVIGSEDPYHYRNKIIEPFRKSKG 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
           ++    F +++ +   ++  +  S L N ++ E+ + +  E +        +  L  +  
Sbjct: 141 EIISGFFKRKSHDVFEVEESILNSRLGNKIIKELKSILNREKVSVYDENEHKGILRNVMV 200

Query: 110 LTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR---- 164
            T+  ++A+ V +I    ++  +++  + L++ ++  K  I +     +T + L      
Sbjct: 201 RTNSKNEAMLVLIINAVKVEKRYKDILMELKNKINEIK-SIYISLNPKRTNVALGEKNVF 259

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
            + ++ +T     + +     SF Q N      +    +   K I+  ++++ Y G G  
Sbjct: 260 IWGEKTITEEIDGISFNISPLSFFQINLPQTKKLYNTAVNYFKDIENKNVVDAYSGTGTL 319

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +++L++   +V A+E+ + +          N ++N++ +  + ++            +L 
Sbjct: 320 AMILSKKAKKVFAIELVQSATNDGIKTAKENGISNIEFINGAVED------------KLP 367

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHT 340
           ++     +   I  DPPR G++++++  V       I+YISCNP +  RD  ILS   +T
Sbjct: 368 ELIKKGEKVDAIIFDPPRKGIEESSLLKVAESNIKEIVYISCNPSTFARDAEILSREGYT 427

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +E++   D FP T H E     ++
Sbjct: 428 LEKVQPVDMFPGTAHTEVVGRFIK 451


>gi|260899635|ref|ZP_05908030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ4037]
 gi|308110556|gb|EFO48096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ4037]
          Length = 439

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 150/371 (40%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L    Y+QQL  K   LRQ+M  F   ++ +      E + YR RA   ++ D    
Sbjct: 90  GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +NAL+ E+ + +        +L  ++ +   +  
Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNALLPEIYSVLTAFKK-PEQLGHVELVLGDNGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I      R L +   E    L +     +  + L+   ++  +        E       
Sbjct: 209 CITL----RYLSNLADEEVSALVELATRHQASLYLMPETDQLNLVAG-----EMPFYQEA 259

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
            +      N+F Q N  +N  M+E  +        + +L+L+CG GNFSL +A+    V+
Sbjct: 260 GVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     VE A  N + N +NN +    + ++                    +  F  +
Sbjct: 320 GVEGVAEMVEKASNNASLNQINNAQFYHANLEQDFDGQA------------WAAENFDKV 367

Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
            +DP R+G       +       ++Y+SCNP +L RD  S+L   + + +L + D FP+T
Sbjct: 368 LLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 428 SHLESMALFEK 438


>gi|153839832|ref|ZP_01992499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ3810]
 gi|149746649|gb|EDM57637.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AQ3810]
          Length = 439

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L    Y+QQL  K   LRQ+M  F   ++ +      E + YR RA   ++ D    
Sbjct: 90  GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +N L+ E+ + +        +L  ++ +   +  
Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSVLTAFKK-PEQLGHVELVLGDNGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I      R L +   E    L +     +  + L+   ++  +        E       
Sbjct: 209 CITL----RHLSNLADEEVSALVELATRHQASLYLMPETDQLNLVAG-----EVPFYQEA 259

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
            +      N+F Q N  +N  M+E  +        + +L+L+CG GNFSL +A+    V+
Sbjct: 260 GVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     VE A  N + N +NN +    + ++                    + +F  +
Sbjct: 320 GVEGVAEMVEKASNNASLNQINNAQFYHANLEQDFDGQA------------WAAEKFDKV 367

Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
            +DP R+G       +       ++Y+SCNP +L RD  S+L   + + +L + D FP+T
Sbjct: 368 LLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 428 SHLESMALFEK 438


>gi|328474127|gb|EGF44932.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio parahaemolyticus
           10329]
          Length = 439

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 149/371 (40%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L    Y+QQL  K   LRQ+M  F   ++ +      E + YR RA   ++ D    
Sbjct: 90  GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +N L+ E+ + +        +L  ++ +   +  
Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEVYSVLTAFKK-PEQLGHVELVLGDNGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I       L DD        L +     +  + L+   ++  +        E       
Sbjct: 209 CITLRHLSNLADDE----VSALVELATRHQASLYLMPETDQLNLVAG-----EVPFYQEA 259

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
            +      N+F Q N  +N  M+E  +        + +L+L+CG GNFSL +A+    V+
Sbjct: 260 GVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     VE A  N + N +NN +    + ++                    + +F  +
Sbjct: 320 GVEGVAEMVEKASNNASLNQINNAQFYHANLEQDFDGQA------------WAAEKFDKV 367

Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
            +DP R+G       +       ++Y+SCNP +L RD  S+L   + + +L + D FP+T
Sbjct: 368 LLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 428 SHLESMALFEK 438


>gi|331700891|ref|YP_004397850.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128234|gb|AEB72787.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
           B-30929]
          Length = 461

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 140/382 (36%), Gaps = 42/382 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD-GDDLYHI 61
           Y +QL  K D +RQ +  +Q            I   +P HYR +A F I HD   +    
Sbjct: 96  YPKQLEFKRDVVRQSLEKYQPTGYRRFKLLPTIGMDDPTHYRNKATFQIRHDENGNTIAG 155

Query: 62  MFDQQTKERMR-----------IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
           ++  ++ + +            +        +I+ L I      +   +++  + +    
Sbjct: 156 LYKARSHDVVDLKTSALQYPLTMKVMRAIVTMIDELGIPAYDEEKNAGIIKTVVVRAAIA 215

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD-- 168
           T   DQ  VT I          +   R++  L      +Q +     T +    + +   
Sbjct: 216 T---DQVQVTFITQSKKLLKKHQLLERIKAELPEVVSVMQNVNPGR-TSLIWGDEMIHLA 271

Query: 169 --ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSL 225
             E +T     L +     +F Q N  +   + +    A        L++ Y G G   L
Sbjct: 272 GRETITEVLNGLKFDLSARAFLQANPAMTSILYDEAFKALDLKGNEKLVDAYSGVGTIGL 331

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+    V  ++    +V+ A  N   N + N       ++E             L + 
Sbjct: 332 SVAKQVREVRGMDTIAEAVQDANANSVRNGIFNCLYEVGEAEEL------------LPEW 379

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIER 343
               +    + VDPPR+GL D+ +  +        +YISCNP +L +DL  L+  + +E 
Sbjct: 380 VDDGWTPTALIVDPPRTGLADSLIDTILDIVPKKFVYISCNPSTLAQDLVKLTEKYNVEY 439

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D  P T   EC V   +K
Sbjct: 440 IQSVDLMPQTSRCECVVKFKKK 461


>gi|145300530|ref|YP_001143371.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142853302|gb|ABO91623.1| RNA methyltransferase [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 456

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 135/389 (34%), Gaps = 38/389 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
              +    Y  QL  K   ++  +          N  +    P  YR +A++ +      
Sbjct: 85  GCQVRPLAYPAQLKLKQALVQSALEQAGLGNTTVNPILGMESPFAYRNKAQYAVRGCEAG 144

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                + + + + +  D       L           +    I     +     +R  + +
Sbjct: 145 AEIGFYRKHSHDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEVNHTGCVRNLMTR 204

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL--RDALHARKYQIQLIGRANKTKICLDR 164
             + + +    +VTL      +         L     +     +          ++ L  
Sbjct: 205 KGFKSGELMVVLVTLGEALPFEAELLATLSDLPITTLVQNINDERTNRILGANNRVLLGE 264

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
             + +++      L +     SF Q N      +    L   +    + + ++YCG G  
Sbjct: 265 GVIRDKIH----ELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGIGTI 320

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA    +V+ +E  + ++  AR N A N + + +     +++             + 
Sbjct: 321 SLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQL------------MP 368

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340
           ++         + +DPPR G D A +  +   A   ++Y+SCNP +L RDL+ L      
Sbjct: 369 ELYAQGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFM 428

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPSGW 369
           ++ +   D FP++ H+E    L   P+G 
Sbjct: 429 LDEVQPVDMFPHSMHVEAVARLSL-PAGK 456


>gi|167037122|ref|YP_001664700.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320115540|ref|YP_004185699.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855956|gb|ABY94364.1| RNA methyltransferase, TrmA family [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928631|gb|ADV79316.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 450

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 161/392 (41%), Gaps = 47/392 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGD 56
            G +  +  Y  QL  K D +++++    + + +   I +S   H YR + E+    D +
Sbjct: 78  GGCIYQNVDYSDQLKIKEDIVKKLLEKEGIRDYEFLGIVKSPKEHGYRNKMEYTFGKDKE 137

Query: 57  DLYHIMFDQQT---------KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ- 106
               +   ++          K  +  D F+    L     I+       +   +  L   
Sbjct: 138 GNEVLGLHRKGRFYEVVMTDKCNIVDDDFLKALNLTFDYAIKKGLPFYDKKTHKGFLRHL 197

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGRANK 157
           +    S++ + ++ ++    L+  ++E            RL   LH +           K
Sbjct: 198 VVRKASKAGEILLNIVTTTQLEHDFKELIEIYKNVDFESRLVGVLHTQNDSWSDAVVCEK 257

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
             +   +DY+ E L      L ++    SF Q N+     + E V      +    + +L
Sbjct: 258 LNVLYGKDYLIEELL----GLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDL 313

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G   +++A    +V+ +E+ + +V +AR N   N + N   +       +Q ++  
Sbjct: 314 YSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAKLNGLENCTFIAGD---VSQKLKEI 370

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
           +E            +   + VDPPRSG++   +  +  +    I+Y+SCNP+SL RDL  
Sbjct: 371 KE------------KPDVVIVDPPRSGINPKALEDIVKFNAEKIVYVSCNPESLVRDLKT 418

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           LS   + ++++   D FP+T H+E  VL+ RK
Sbjct: 419 LSEDVYKVKKVKCVDMFPHTYHVETVVLIERK 450


>gi|330446947|ref|ZP_08310598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491138|dbj|GAA05095.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 439

 Score =  249 bits (635), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 151/375 (40%), Gaps = 37/375 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWH- 53
              L    ++ Q+  K   L ++M  F +           + +SE  HYR  A F +   
Sbjct: 89  GCNLQHLSHQGQVIAKQQALTELMEKFAITEEGTTQVAPIVGQSE--HYRRCARFSVRML 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +      +Q+K+ + +      +  +++L+  +   +      +  L  I+ + + 
Sbjct: 147 PNGQMVFGFRKKQSKDIVDVTSCPVLATELDSLLPALRELLSGLKGRKH-LGHIELVNAD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLT 172
           + + ++     R L     +    ++      +  + L   +++  ++  ++ Y D    
Sbjct: 206 NGRVLLI----RHLQPFNDKDFAAIKAFATEHQLMLFLAPSSDELEQVTGEQPYYD---- 257

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
                +        F Q N  +N  M+E  +       Q  +L+L+CG GNFSL LAR  
Sbjct: 258 --IEDVRLTFSPKDFIQVNRAVNQKMVEQAINWLDVQPQDRVLDLFCGLGNFSLPLARSA 315

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE     V  A  N  AN ++N    + +  E    +   +E            +
Sbjct: 316 KAVVGVEGVDEMVARATANAVANRLDNATFYQANLDEDVTKLVWAQE------------Q 363

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQ 349
           F  I +DP R+G       +V   P  ++Y+SCNP +L RD   +L   + + RL + D 
Sbjct: 364 FDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPATLARDSQILLQQGYKLARLGMMDM 423

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E   L V+
Sbjct: 424 FPHTGHLESMALFVK 438


>gi|224369754|ref|YP_002603918.1| TrmA [Desulfobacterium autotrophicum HRM2]
 gi|223692471|gb|ACN15754.1| TrmA [Desulfobacterium autotrophicum HRM2]
          Length = 462

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 139/391 (35%), Gaps = 56/391 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEP----IHYRMRAEFHIWHDG--------D 56
           YE QL  K   + + +    +  ++++    P      +R + EF              +
Sbjct: 89  YETQLEYKQRHVTESLEHIGLLKDVEVLPVIPSRKIFGFRNKMEFSCTTSRWLMPEDLEN 148

Query: 57  DLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQ 106
                 F             + ID  +      N +M  +   I    +    LR+    
Sbjct: 149 PDIKKGFGLGLHVPGTFDRIIDIDKCLIQPDTGNQIMQVVRQYIVESGVPAYGLRSHEGF 208

Query: 107 IDYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI-------GRA 155
             +L    +S  +  +V ++     D      A  L++   +    +  +          
Sbjct: 209 WRFLMLRSSSAFNTWMVNIVTSEENDALLIPLAEHLKNMFPSIVSIVNNVTAKKAGIATG 268

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214
           +  K+     ++ E+L        +    NSF Q N      +   V         + ++
Sbjct: 269 DYEKLLAGEQFIREKLGR----FTFEISANSFFQTNTAGAEQLYSLVSEYADLTGNETVV 324

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G   + L+    +V+ +EI + +V  A+ N A N ++N +      K+    + 
Sbjct: 325 DLYSGTGTIPIWLSDRAKKVVGIEIVESAVVDAKKNAALNQIDNCEFFVGDIKDVLPQLD 384

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
                               + +DPPR G+    V  V A     I+Y+SCNP +L RDL
Sbjct: 385 A---------------TCNVMIIDPPRVGMHKDVVAQVMAIAPKKIVYVSCNPATLARDL 429

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
            +L   + + ++   D FP+T H+E   LL 
Sbjct: 430 GMLKERYRVVKVQPVDMFPHTFHIESVALLE 460


>gi|291539998|emb|CBL13109.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis
           XB6B4]
          Length = 492

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 90/412 (21%), Positives = 151/412 (36%), Gaps = 62/412 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN------LQIFRSE-PIHYRMRAEFHIW-- 52
             T     YE+QL+ K  +++ ++ A           L I  S  P  YR + EF     
Sbjct: 81  GCTFQSLPYEEQLSMKEQQVKDLIDAVITEENKGYEFLPIKASPRPKAYRNKMEFSFGDE 140

Query: 53  HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLL 100
           +    L   M  + +  + + +            +            I     +R    L
Sbjct: 141 YKDGPLALGMHKRGSFYDIVNVGECQIVDEDFRRVLKITLEYFKEKQIPFYHKLRHTGYL 200

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLL----DDAWRECAIR----------LRDALHARK 146
           R  L +    T +    +VT      L    + A  E  ++          L+  LH + 
Sbjct: 201 RHFLVRKAAKTGEILVDLVTTTQMEELSGENESALLEGWVKKLCEEKYDGVLKGILHTKN 260

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
             +    +   T I   +D+  E L      L ++    SF Q N+     + +      
Sbjct: 261 DSVADTIKNEGTDILFGQDFFYEELL----GLKFKITPFSFFQTNSLGAEVLYQTAREFI 316

Query: 207 KGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                D     + +LY G G  + +L+    +V+ VEI + +V AAR N A N + N + 
Sbjct: 317 GDALDDEANQTVFDLYSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNCEF 376

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHIL 319
           +                   LK ID    +   I +DPPR G+    +  +  Y  P ++
Sbjct: 377 IAGDV---------------LKVIDTIGEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMV 421

Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           YISC P SL RDL +L    + ++++   D FP T ++E   LL +     H
Sbjct: 422 YISCKPTSLARDLEVLQARGYKVKKVQCVDMFPSTGNVETVCLLSKLHEAKH 473


>gi|313158329|gb|EFR57731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alistipes sp. HGB5]
          Length = 469

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 143/398 (35%), Gaps = 60/398 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEF----HIWHDGDDLY 59
            YE+QL  K +++R  +       L      +   +   YR + EF      W   +++ 
Sbjct: 91  PYEEQLRFKTEQVRDQLTRIGKIALPQIAPCLGSEQTRFYRNKLEFTFADRRWLTREEVE 150

Query: 60  HI---------------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---- 100
                            MFD+     + ID         N +  E               
Sbjct: 151 SGTDFDAAPALGFHIPNMFDK----VLDIDKCWLQPDPSNDIRTETRRFCIENGYTFHNA 206

Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR--- 154
              R  +  +   T+ + + +V +++     +        L            ++     
Sbjct: 207 REHRGLMRNMIVRTASTGEVMVIVVFGEDDRERIAALLDHLAANFPQITSLFYIVNTKFN 266

Query: 155 ---ANKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
               +   +C   +D++ E +      L ++    SF Q N+     + +          
Sbjct: 267 DSVGDLDPVCYKGKDHIVEEM----EGLRFKVGPKSFYQTNSAQAYELYKVAREFADLKP 322

Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            D+L +LY G G  +   A    RV+ VE    ++  A+ N   N + N        K+ 
Sbjct: 323 EDVLYDLYTGTGTIANFCAARCSRVVGVEYVPEAIADAKVNSQINGIGNTVFYAGDMKQV 382

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                              + R   I +DPPR+G+D+  +G++   A   I+Y+SCNP +
Sbjct: 383 LSD-----------GFVAANGRPDVIILDPPRAGVDEPVIGVILRAAPRRIVYVSCNPAT 431

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL++L   + +E +   D FP+T H+E  V LVR+
Sbjct: 432 QARDLALLDADYRVEAVQPVDMFPHTHHVENVVKLVRR 469


>gi|307610159|emb|CBW99707.1| hypothetical protein LPW_14751 [Legionella pneumophila 130b]
          Length = 444

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 85/378 (22%), Positives = 153/378 (40%), Gaps = 34/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L     E+Q+  K   L  ++  +     Q   S     P +YR +A          
Sbjct: 85  GCSLQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLSPLTSHPWNYRNKARLSTRFVEKK 144

Query: 58  LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
              ++  ++         I+     +  I+  ++ +   I      +  + QI+     +
Sbjct: 145 QSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMED-KQCIAQIEVAAGDN 203

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDER 170
           + A++     R L     +  +++R      +Y+I L      +  C        Y++  
Sbjct: 204 EVALI----FRNLTPLTEQDELKIRKFAQQFQYKIFLQPGGLDSVFCFYPSDAHAYLNYE 259

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L     T  +    N FTQ NA +N  M++  +   +    D +L+L+CG GNFSL +A+
Sbjct: 260 LPDYQITFQFH--PNDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAK 317

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           H  RV+ VE  +  VE A  N  +NH+ NV     +  +  +              ++ +
Sbjct: 318 HCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDVMEV------------RNLVN 365

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346
             F  + +DPPRSG  +    +    P  I+Y+SCNP +L RD  IL     + +    +
Sbjct: 366 TSFSKVLIDPPRSGALEIVKQIDAIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGV 425

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E   L  +
Sbjct: 426 MDMFPHTAHVESIALFQK 443


>gi|28899340|ref|NP_798945.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260363768|ref|ZP_05776537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus K5030]
 gi|260878969|ref|ZP_05891324.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AN-5034]
 gi|260898314|ref|ZP_05906810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus Peru-466]
 gi|50401546|sp|Q87LP5|RUMA_VIBPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|28807576|dbj|BAC60829.1| putative TrmA family RNA methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085240|gb|EFO34935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus Peru-466]
 gi|308090505|gb|EFO40200.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus AN-5034]
 gi|308111237|gb|EFO48777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio
           parahaemolyticus K5030]
          Length = 439

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L    Y+QQL  K   LRQ+M  F   ++ +      E + YR RA   ++ D    
Sbjct: 90  GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +N L+ E+ + ++       +L  ++ +   +  
Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSVLKAFKK-PDQLGHVELVLGDNGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I       L DD        L +     +  + L+   ++  +        E       
Sbjct: 209 CITLRHLSNLADDE----VSALVELATRHQASLYLMPETDQLNLVAG-----EVPFYQEA 259

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
            +      N+F Q N  +N  M+E  +        + +L+L+CG GNFSL +A+    V+
Sbjct: 260 GVKIPFDPNNFIQVNQAVNQKMVEQAIKWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     VE A  N + N +NN +    + ++                    + +F  +
Sbjct: 320 GVEGVAEMVEKASNNASLNQINNAQFYHANLEQDFDGQA------------WAAEKFDKV 367

Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
            +DP R+G       +       ++Y+SCNP +L RD  S+L   + + +L + D FP+T
Sbjct: 368 LLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLDQGYQLTKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 428 SHLESMALFEK 438


>gi|225388648|ref|ZP_03758372.1| hypothetical protein CLOSTASPAR_02384 [Clostridium asparagiforme
           DSM 15981]
 gi|225045246|gb|EEG55492.1| hypothetical protein CLOSTASPAR_02384 [Clostridium asparagiforme
           DSM 15981]
          Length = 467

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 158/403 (39%), Gaps = 64/403 (15%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPI--HYRMRAEFHIWHD- 54
            G +     YE+QL  K  +++ ++     P     Q  +  PI   YR + EF    + 
Sbjct: 79  GGCVYQSLPYEEQLKIKESQVKALLDPVVKPGSYEFQGIKGSPISDGYRNKMEFSFGDEF 138

Query: 55  -GDDLYHIMFDQQTKERMRIDYFMPGSLLIN---------------ALMIEMMATIRLEP 98
            G  L   M  + +   +      PG  +++                L    +  +  + 
Sbjct: 139 KGGPLALGMHKRGSFYDI---VTTPGCRIVHGDFCKILESTRAYFAELGTAFLGKLSHKG 195

Query: 99  LLRAKLFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALH 143
            LR  L +         +D +T+   + + T +    +   W+E  +      R    LH
Sbjct: 196 YLRHLLVRRAVKTGEILVDLVTTTQTEYLGTDMQEDQVLGGWKERLLGLELEGRFAGILH 255

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
                +  + ++++T +   +DY  E L      L +R    SF Q N+     + +   
Sbjct: 256 TLNDSLADVVQSDRTDVLYGQDYFYEELL----GLRFRISPFSFFQTNSLGAEVLYDMAR 311

Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +  ++ +LY G G  + +LA    +V+ VEI + +VEAAR N   N + N + +
Sbjct: 312 SYVGETKDKVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAARMNAKLNGLENCEFL 371

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILY 320
                              LK ID    +   I +DPPR G+    +  +       ++Y
Sbjct: 372 AGDV---------------LKVIDEIQDKPDLIMLDPPRDGIHPKALNKIIEFGVERMVY 416

Query: 321 ISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           ISC P SL RDL +L    + +E+    D FP T ++E  +++
Sbjct: 417 ISCKPTSLARDLVVLQERGYRVEKGGAVDMFPGTGNVEVVIMM 459


>gi|167757279|ref|ZP_02429406.1| hypothetical protein CLORAM_02829 [Clostridium ramosum DSM 1402]
 gi|167703454|gb|EDS18033.1| hypothetical protein CLORAM_02829 [Clostridium ramosum DSM 1402]
          Length = 378

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 151/389 (38%), Gaps = 48/389 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
           S   +   Y++QL  K D  ++++   ++   +    I    P  YR +      H    
Sbjct: 11  SCKYINTDYQRQLKIKTDYCKKLLKDNKLDMYEVKDTIGMGHPYEYRNKIIVAFNH---R 67

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                +++ + + +  D  +    L           +    + +    R   LLR  L +
Sbjct: 68  YEFGFYEEDSHKIIPYDRCLLHEELSDMIIKKIQSLLKRYRVSIYDENRNRGLLRHVLIR 127

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTK 159
              +T+Q+   +V L+ +  +    +     L     + K  +  + +        N+ K
Sbjct: 128 RALVTNQT---MVVLVCNDNVFKGSKNFCNELIKNFPSIKTVVLNVNKRKTSVVLGNEEK 184

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYC 218
           I   + ++ + L      L ++    SF Q N      +    L       Q  +++ YC
Sbjct: 185 ILYGKGFIVDELC----GLKFKISPKSFYQINHQQCELLYSKALDLLNLTGQERIIDAYC 240

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   +++A     V  VE+ K +V+ A  N   N + N+K +   +  F   + ++++
Sbjct: 241 GIGTIGMIVANRTKEVTGVELNKDAVKDAINNAKMNKIENIKFINDDASAFMIKLAKQKQ 300

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                       +   + +DPPRSG     +  V+      ++YISC+P +  RD+   +
Sbjct: 301 ------------KVDCVIMDPPRSGSTQEFMDAVKILNPKQVVYISCDPSTQVRDIKYFA 348

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364
              +  E +   D FP+T H+E  VLL +
Sbjct: 349 KIGYRGEVMYPVDMFPHTSHVETIVLLSK 377


>gi|78044405|ref|YP_359958.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996520|gb|ABB15419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 441

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 85/383 (22%), Positives = 140/383 (36%), Gaps = 36/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57
             +L    YEQQL  K  ++  +M      +  I    P      YR +  F      + 
Sbjct: 76  GCSLQNLDYEQQLVLKKTKVYNIMKKIGRIDAPINSVLPNFAFYRYRQKVHFTFGSSQNK 135

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPL------LRAKLFQID 108
           L    FD++      +   +        +   + E++   +L+        LR  + +  
Sbjct: 136 LAIGYFDRK-NNWFPVTDCLIADKSLVEVAHYVTEILDAFKLKAYFNDAGVLRHLVVRKS 194

Query: 109 YLTSQSDQAI--VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
             T +    I  V L ++     A       ++        +         T +     Y
Sbjct: 195 STTGEIQVVITAVKLNFNVKEIAAKILLNPEIQSLTFHENPKKTREVFGKGTAVTFGTRY 254

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSL 225
           + E L      + YR    SF Q N      +    L     G    + + Y G G+ +L
Sbjct: 255 ITEELL----GISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFDGYSGVGSLTL 310

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             AR    V+ VE  + +VE A+ N   N + NV       +E            +L  +
Sbjct: 311 PAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEE------------KLPWL 358

Query: 286 DIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST-THTIE 342
               YRF  I +DPPR G+    +  +++  P  I+Y+SCNP +  RDL IL+   +   
Sbjct: 359 LKKGYRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYPV 418

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D F  T H+E  VLL +K
Sbjct: 419 EITPVDMFSQTMHVENVVLLKKK 441


>gi|240146223|ref|ZP_04744824.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
 gi|257201634|gb|EEU99918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Roseburia intestinalis
           L1-82]
          Length = 561

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 150/406 (36%), Gaps = 62/406 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN------LQIFRSE-PIHYRMRAEFHIW-- 52
             T     YE+QL+ K  +++ ++ A           L I  S  P  YR + EF     
Sbjct: 81  GCTFQSLPYEEQLSMKEQQVKDLIDAVITEENKGYEFLPIKASPRPKAYRNKMEFSFGDE 140

Query: 53  HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLL 100
           +    L   M  + +  + + +            +            I     +R    L
Sbjct: 141 YKDGPLALGMHKRGSFYDIVNVGECQIVDEDFRRVLKITLEYFKERQIPFYHKLRHTGYL 200

Query: 101 RAKLFQIDYLTSQSDQAIVTLIY--------HRLLDDAWRECAIR------LRDALHARK 146
           R  L +    T +    +VT             +L D W +          L+  LH + 
Sbjct: 201 RHFLVRKAAKTGEILVDLVTTTQTDGLGAETESILLDGWVKALCEETYDGVLKGILHTKN 260

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
             +    +   T I   +D+  E L      L ++    SF Q N+     + +      
Sbjct: 261 DSVADTIKNEGTDILFGQDFFYEELL----DLKFKITPFSFFQTNSLGAEVLYQTAREFI 316

Query: 207 KGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                D     + +LY G G  + +L+    +V+ VEI + +V AAR N A N + N + 
Sbjct: 317 GDALDDEASQTVFDLYSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNCEF 376

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHIL 319
           +                   LK ID    +   I +DPPR G+    +  +  Y  P ++
Sbjct: 377 IAGDV---------------LKVIDKIEEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMV 421

Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           YISC P SL RDL +L    + ++++   D FP T ++E  VLL +
Sbjct: 422 YISCKPTSLARDLEVLQARGYKVKKVQCVDMFPSTGNVETVVLLSK 467


>gi|116334661|ref|YP_796188.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           brevis ATCC 367]
 gi|116100008|gb|ABJ65157.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           brevis ATCC 367]
          Length = 487

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 148/390 (37%), Gaps = 48/390 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QLA K D + Q +  +Q            +   +P  YR +A+F +  + + 
Sbjct: 116 LEHLDYPAQLAFKRDVVAQALERYQPEGFHSYDLRPTLGMKDPYGYRNKAQFQVRRNAEG 175

Query: 58  LY-HIMFDQQTKERMRIDYF-----------MPGSLLINALMIEMMATIRLEPLLRAKLF 105
                ++ +++ + + +                   ++  L + +    +   +++  + 
Sbjct: 176 QVEAGLYAERSHDLIDLPTCSVQMPVTMTVMRAVVAMLQDLDMPIYDEEQKSGIVKTLVV 235

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKT 158
           +     + +D   +  I +       RE   R+ + L      +Q I          + T
Sbjct: 236 R---AAAHTDDVQLVFITNSPKLPHKRELLERIANELPQVTSVMQNINPGETSLVWGDDT 292

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELY 217
           +     + + E+L      L ++    +F Q N      + +    A     G  +++ Y
Sbjct: 293 RHLAGAEAITEKLG----DLTFKLSARAFLQLNPAQTEVLYDEAKKALDLQPGQTVVDAY 348

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G   L LA     V  +EI   +V+ A  N AAN + N      ++++         
Sbjct: 349 AGIGTIGLSLADVAAEVRGMEIIPEAVDDANANAAANGITNAHYEVGTAEDL-------- 400

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL 335
               L    +  +R   I VDPPR+GLD   +  + A     ++Y+SCNP +L +DL  L
Sbjct: 401 ----LPKWVMAGFRPDAIVVDPPRTGLDATLIETILAIRPSKLVYVSCNPSTLAKDLVDL 456

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  + +E +   D  P T   E  V L R+
Sbjct: 457 TADYRVEYIQSVDMMPQTARCEAVVKLTRR 486


>gi|257792631|ref|YP_003183237.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243]
 gi|257476528|gb|ACV56848.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243]
          Length = 438

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 135/408 (33%), Gaps = 68/408 (16%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHI-------------- 51
            Y QQLA K  R+ ++       +     +   EP  YR +                   
Sbjct: 37  PYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVVSPYAPGRKLQGSANARA 96

Query: 52  --------WHDGDDLYH-------IMFDQQTKERMRIDYFMPGSL-----------LINA 85
                     DG             M+   +   +  D  +  +            L+  
Sbjct: 97  GKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIENEEAKRIIRTVRDLMPR 156

Query: 86  LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
             IE          LR  + ++ +    S + +VTL+ +     A R     L       
Sbjct: 157 FGIEPYREDSGTGFLRHAVVRVGH---TSGEILVTLVTNGRAFPASRAFCRELVRRCPRI 213

Query: 146 KYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
              +Q +    +T + L       Y    +      L +R    SF Q NA     + E 
Sbjct: 214 TSVVQNVN-ERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSFYQVNAVQTEVLYER 272

Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +  A        ++ YCG G   LV A+    +V+ V+    +V  AR N   N V N 
Sbjct: 273 AIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKHNGVENA 332

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317
           +     +  F +            +          + +DPPR+G  +  +      A   
Sbjct: 333 RFAVGDAGAFMR------------ERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAPRR 380

Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           I+YISCNP +  RDL+ L    + +  +   D FP+T H+E   L+ R
Sbjct: 381 IVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETIALVER 428


>gi|301066818|ref|YP_003788841.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus
           casei str. Zhang]
 gi|300439225|gb|ADK18991.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           casei str. Zhang]
          Length = 455

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 137/383 (35%), Gaps = 47/383 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D + Q +  F+            I  ++P HYR +A+F +      +   +
Sbjct: 91  YPAQLRFKRDVVAQSLAKFKPTGWTHYDLRPTIGMAQPTHYRNKAQFPVRVIDGHVRAGL 150

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + +  F+               ++  L I +    +   +++  + +  + T
Sbjct: 151 YAPNSHHLIPLTKFLTQAPLTMKVVTTLCQILEQLQIPIYNEKKRSGIVKTLVVRESFAT 210

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
               +  VT I +        E    +   L       Q I           ++++    
Sbjct: 211 K---EVQVTFITNSPKLPHEGELLNAIATQLPMVVSIAQNINPGETSLIWGKESRLLAGL 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
            Y+ E L        ++    +F Q N      +      A   G    L++ YCG G  
Sbjct: 268 PYIQETLL----GRTFQLSPQAFLQLNPKQTETLYTLAAKALDLGPHDTLIDAYCGIGTV 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA+    +  ++     +  A+ N  AN + N       +++      +E       
Sbjct: 324 GISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFPKWVQE------- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                  +   + VDPPR+GL+ A +  +     P  +YISCNP +L RDL  L+  + +
Sbjct: 377 -----GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLARDLVFLTKRYKV 431

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   D FP T   E  V   R
Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTR 454


>gi|319937203|ref|ZP_08011610.1| hypothetical protein HMPREF9488_02445 [Coprobacillus sp. 29_1]
 gi|319807569|gb|EFW04162.1| hypothetical protein HMPREF9488_02445 [Coprobacillus sp. 29_1]
          Length = 452

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 154/390 (39%), Gaps = 45/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57
              L       Q   K  R++  +      ++++       +P +YR + +  +   G+ 
Sbjct: 79  GCHLQHLSMAGQQNFKTKRVKDTLQRIGHCHVEVLPCLMMEKPWYYRNKVQVPVGLHGNT 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQ 106
           +    + Q + + + ++     +   N L+  +   ++            +  +R  L +
Sbjct: 139 IVTGFYKQHSNDIVPMETCYIQNNESNRLVNRVRNLLQETQENPYDKMSHQGNIRHILVK 198

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTK 159
                  S Q ++ LI ++            L++     K  IQ I +        +K K
Sbjct: 199 YGL---TSQQLMLVLITYQDSIKNINTIVKTLKNEFPDLKTIIQNINKKHDNVILGDKVK 255

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +     Y+++ L       IYR    SF Q N     H+ +  +  A      ++++ YC
Sbjct: 256 VIDGPGYIEDELLGN----IYRISVKSFYQVNPKQVEHLYQKAIEFADLKPTDEVIDAYC 311

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL +A++  +V  VEI + ++  A+ N   NHV+NV+     + EF     ++++
Sbjct: 312 GIGTISLSMAKYVKKVYGVEIVEQAIIDAKENAQRNHVSNVEFTCQDAGEFMVEFAKQQK 371

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                           + VDPPR G     +  +   +   I+Y+SC+  +  RD++ L 
Sbjct: 372 ------------HIDVVMVDPPRKGCSQVFLDQLVTLSPDKIIYVSCDVATQARDIAYLQ 419

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVRK 365
              + ++     D FP T ++E  + L +K
Sbjct: 420 EHNYQVDICQPVDMFPQTHNIENIIRLSKK 449


>gi|317488920|ref|ZP_07947450.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA]
 gi|316911994|gb|EFV33573.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA]
          Length = 405

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/408 (20%), Positives = 139/408 (34%), Gaps = 68/408 (16%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHI-------------- 51
            Y QQLA K  R+ ++       +     +   EP  YR +                   
Sbjct: 4   PYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVVSPYAPGRKLQGSANARA 63

Query: 52  --------WHDGDDLYH-------IMFDQQTKERMRIDYFMPGSL---LINALMIEMMAT 93
                     DG             M+   +   +  D  +  +     I   + ++M  
Sbjct: 64  GKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIENEEAKRIIRTVRDLMPR 123

Query: 94  IRLEPL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
             LEP         LR  + ++ +    S + +VTL+ +     A R     L       
Sbjct: 124 FGLEPYREDSGTGFLRHAVVRVGH---TSGEILVTLVTNGRAFPASRAFCRELVRRCPRI 180

Query: 146 KYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
              +Q +    +T + L       Y    +      L +R    SF Q NA     + E 
Sbjct: 181 TSVVQNVN-ERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSFYQVNAVQTEVLYER 239

Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +  A        ++ YCG G   LV A+    +V+ V+    +V  AR N   N V N 
Sbjct: 240 AIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKHNGVENA 299

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317
           +     +  F +            +          + +DPPR+G  +  +      A   
Sbjct: 300 RFAVGDAGAFMR------------ERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAPRR 347

Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           I+YISCNP +  RDL+ L    + +  +   D FP+T H+E   L+ R
Sbjct: 348 IVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETIALVER 395


>gi|260682153|ref|YP_003213438.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           CD196]
 gi|260208316|emb|CBA60769.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           CD196]
          Length = 456

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 145/393 (36%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54
             TLL   YE+QL  K  ++  + L      FQ   ++    E  +YR + E  F     
Sbjct: 84  GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 142

Query: 55  GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102
              L   +  +     ++ ++  M                 N   +    T+  +  LR 
Sbjct: 143 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 202

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156
            + +    T++    IVT        + +++  +       L   LH     +    + +
Sbjct: 203 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCD 262

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           + ++   RDY+ E +      L ++    SF Q N      +              ++ +
Sbjct: 263 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 318

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +  + ++ 
Sbjct: 319 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 377

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I VDPPR G+    +  +  +    I+YISCNP SL  DL 
Sbjct: 378 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 423

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
                 + I+ +   D FP T H E  V L+R+
Sbjct: 424 DFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 456


>gi|238917477|ref|YP_002930994.1| hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750]
 gi|238872837|gb|ACR72547.1| Hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750]
          Length = 470

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/399 (23%), Positives = 147/399 (36%), Gaps = 54/399 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI---WHD 54
             T     YE+QL  K  ++ +++       L     I       YR + EF     + D
Sbjct: 91  GCTYQTVAYEEQLKIKSTQVEKLLREVVSGELPFEGIIGSPVTEEYRNKMEFSFGDEYKD 150

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAK 103
           G     +       + + +            ++  +              +  E  LR  
Sbjct: 151 GPLALGLHKRNSMYDIVPVTECKIIDEDYRKILTCVQDYAIEKELPFQHKLSHEGYLRHL 210

Query: 104 LFQIDYLTSQSDQAIVTL--IYHRLLDDAWR----ECAIRLRDALHARKYQIQLIGRANK 157
           L +    T Q    IVT   I H   +   R    E    L   LH     +       K
Sbjct: 211 LVRKSVKTGQILVDIVTTTQIEHDFTELVNRLTSIEYKGTLTGVLHTFNDSLADAVINEK 270

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGD- 212
           T++    DY++E L      L ++    SF Q N+     +     E+VL+   G   D 
Sbjct: 271 TELLYGHDYIEEELL----GLRFKITPFSFFQTNSLGAEVLYSKAREYVLSGGFGDVADS 326

Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              + +LY G G  + +L+    +V+ VEI   +VEAA+ N A N + N + +       
Sbjct: 327 KPVIYDLYTGTGTIAQMLSPVASKVIGVEIVAEAVEAAKKNAAQNGLTNCEFIADDV--- 383

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS 327
                       LK +D    +   I +DPPR G+    +  +       ++YISC P S
Sbjct: 384 ------------LKALDNIEIKPDFIVLDPPRDGIHPKALEKIIDYGVDRMVYISCKPTS 431

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           L RDL  L    + +E+    D FP T H+E   LL RK
Sbjct: 432 LARDLVTLQERGYKVEKCCCVDMFPNTGHVESVCLLSRK 470


>gi|54294503|ref|YP_126918.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila
           str. Lens]
 gi|59800218|sp|Q5WW81|RUMA_LEGPL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|53754335|emb|CAH15812.1| hypothetical protein lpl1572 [Legionella pneumophila str. Lens]
          Length = 444

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 151/378 (39%), Gaps = 34/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L     E+Q+  K   L  ++  +     Q   S     P +YR +A          
Sbjct: 85  GCSLQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLSPLTSHPWNYRNKARLSTRFVEKK 144

Query: 58  LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
              ++  ++         I+     +  I+  ++ +   I      +  + QI+     +
Sbjct: 145 QSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMED-KQCIAQIEVAAGDN 203

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDER 170
           + A++     R L     +   ++R      +Y++ L      +  C        Y+   
Sbjct: 204 EVALI----FRNLTPLTEQDESKIRKFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYE 259

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L     T  +    N FTQ NA +N  M++  +   +    D +L+L+CG GNFSL +A+
Sbjct: 260 LPDYQITFQFH--PNDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAK 317

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           H  RV+ VE  +  VE A  N  +NH+ NV     +  +  +              ++ +
Sbjct: 318 HCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDVMEV------------RNLVN 365

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346
             F  + +DPPRSG  +    +    P  I+Y+SCNP +L RD  IL     + +    +
Sbjct: 366 TSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGV 425

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E   L  +
Sbjct: 426 MDMFPHTAHVESIALFQK 443


>gi|309389832|gb|ADO77712.1| RNA methyltransferase, TrmA family [Halanaerobium praevalens DSM
           2228]
          Length = 451

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 151/388 (38%), Gaps = 41/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIW-HDG 55
              L    Y+++L  K + ++Q+      + N ++       +   YR +A+F +  ++ 
Sbjct: 80  GCQLQHIDYQKELEFKQNNIKQLFKRIAGIENFELKDVLAADDDFRYRNKAQFPLKLNEE 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKL 104
           + +    + +++ + +     +    LIN ++   +  +            L+ LLR  +
Sbjct: 140 EQITAGFYQRKSHDIVPNHNCLIQHPLINRILKLTLEELNKFQLSVYNEDTLQGLLRHLV 199

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            ++   T+Q+   +VT     I   L+          L+  +     +   +    +  +
Sbjct: 200 IRVGTCTNQALLVLVTNGDDFIDKNLIARTLMRKIPELKGVVQNINNENTNVIFGKRDIL 259

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219
              +  + E +        Y     SF Q N      + +         Q  ++++ + G
Sbjct: 260 LAGQAKITEYIGAKA----YFISARSFFQVNTLQAKKLYDTAAKYLDSKQEAEVIDAFSG 315

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G+  + L+    ++  +E  K +VE A+ N   N +NN++            + +E   
Sbjct: 316 TGSIGIYLSDKAKKIYGIESLKAAVEDAQKNAELNQINNIEFKLGMVAAKLPVLLKEN-- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                      + +TI  DPPR GL+  T+ ++       I+YISCNP +  RDL  L  
Sbjct: 374 -----------KIETIIFDPPRKGLNQKTIELLLENELKKIIYISCNPATQARDLKKLKK 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + +  +   D FP T H+E   LL  K
Sbjct: 423 KYQLVEIQPVDLFPQTYHIESVALLKLK 450


>gi|126697975|ref|YP_001086872.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           630]
          Length = 455

 Score =  248 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 146/395 (36%), Gaps = 49/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54
             TLL   YE+QL  K  ++  + L      FQ   ++    E  +YR + E  F     
Sbjct: 81  GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 139

Query: 55  GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102
              L   +  +     ++ ++  M                 N   +    T+  +  LR 
Sbjct: 140 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 199

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156
            + +    T++    IVT        + +++  +       L   LH     +    + +
Sbjct: 200 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCD 259

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           + ++   RDY+ E +      L ++    SF Q N      +              ++ +
Sbjct: 260 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 315

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +  + ++ 
Sbjct: 316 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 374

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I VDPPR G+    +  +  +    I+YISCNP SL  DL 
Sbjct: 375 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 420

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
                 + I+ +   D FP T H+EC  L+ R  S
Sbjct: 421 DFKGYGYEIKMVKCMDMFPNTPHVECIALIQRVKS 455


>gi|300864706|ref|ZP_07109561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoria sp. PCC
           6506]
 gi|300337289|emb|CBN54709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oscillatoria sp. PCC
           6506]
          Length = 465

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 139/380 (36%), Gaps = 47/380 (12%)

Query: 13  QLAEKVDRLRQMMLAFQ----VPNLQIFRSEPI---HYRMRAEFHIWHDG-DDLYHIMFD 64
           QL  K + + Q +         P   +     +    YR +A + +       +    + 
Sbjct: 105 QLEAKQNIVIQALQRIGGFTAPPVDPVLTGPDLTALGYRNKATYPLATSSTGQVQAGYYQ 164

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113
           + +   + ++        +N L+ ++   I+               LR    +I   T +
Sbjct: 165 KGSHRLINLNQCPVQDEDLNPLLKDIKKDIQQRGWKTYDEKQQTGELRHLSVRIGRRTGE 224

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               ++     L         W +   +L         +   +    +T+    + Y+ E
Sbjct: 225 ILLTLIVRSGDLSGIEAQASEWLKRYPQLVGVCLNINPRNTNVIFGPETRCIAGKPYLLE 284

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA 228
             +     L ++   ++F Q N+     +L+ +         ++L + YCG G F+L LA
Sbjct: 285 IFS----GLEFQIRADTFFQVNSEAAETLLQVIADELHLEGNEVLVDAYCGIGTFTLPLA 340

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   + + +E+   +V+ A+ N   NH+ NV     + +     +               
Sbjct: 341 KFVSKAIGLELQGAAVKQAQLNAELNHLTNVAFYVGAVENLLPQL--------------- 385

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS--TTHTIERL 344
                 + +DPPR G D   +  + A     I YISC P +L RDL  L     + ++R+
Sbjct: 386 DVTPDVVLLDPPRKGCDRTVLETLVATQPSRIAYISCKPSTLARDLKFLCQNGGYKLQRV 445

Query: 345 ALFDQFPYTRHMECGVLLVR 364
              D FP T H+EC   LVR
Sbjct: 446 QPADFFPQTPHVECAAFLVR 465


>gi|260685752|ref|YP_003216885.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           R20291]
 gi|260211768|emb|CBE02120.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           R20291]
          Length = 453

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 145/393 (36%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54
             TLL   YE+QL  K  ++  + L      FQ   ++    E  +YR + E  F     
Sbjct: 81  GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 139

Query: 55  GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102
              L   +  +     ++ ++  M                 N   +    T+  +  LR 
Sbjct: 140 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 199

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156
            + +    T++    IVT        + +++  +       L   LH     +    + +
Sbjct: 200 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCD 259

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           + ++   RDY+ E +      L ++    SF Q N      +              ++ +
Sbjct: 260 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 315

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +  + ++ 
Sbjct: 316 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 374

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I VDPPR G+    +  +  +    I+YISCNP SL  DL 
Sbjct: 375 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 420

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
                 + I+ +   D FP T H E  V L+R+
Sbjct: 421 DFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 453


>gi|20808214|ref|NP_623385.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479579|ref|ZP_05092891.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum
           DSM 12653]
 gi|50401615|sp|Q8R933|Y1797_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1797
 gi|20516809|gb|AAM24989.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034482|gb|EEB75244.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum
           DSM 12653]
          Length = 450

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 145/390 (37%), Gaps = 46/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57
             T     YE QL  K D + +++    + + +        +   YR + E+    D + 
Sbjct: 79  GCTYQNLSYENQLKIKKDVVLKLLEKEGIKDFEFLGIERSPKVYGYRNKMEYTFGTDREG 138

Query: 58  LYHIMFDQQTK--ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKL 104
              +   ++ K  + +  D                        +        E  LR  +
Sbjct: 139 KKALGLHRKGKFYDVVMTDKCNIVDEDFTKALSLTFNYALEKNLPFYDKKTHEGYLRYLV 198

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRE------CAIRLRDALHARKYQIQLIGRANKT 158
            +      +    IVT    +   D   E       +  L   LH             K 
Sbjct: 199 VRKASKNGELLINIVTTTQLKHKFDDLVELYRSANFSSTLVGVLHTYNDSWSDAVICEKL 258

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELY 217
           ++   RDY+ E L      L ++    SF Q N+     +   V      +    + +LY
Sbjct: 259 EVLYGRDYLIEELL----GLKFKISAFSFFQTNSYGAERIYSTVREFAGDVSNKTIFDLY 314

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   +V+A    +V+ +E+ + +V +A+ N A N + N   +       ++ +R  +
Sbjct: 315 CGTGTIGIVMAPLARKVIGIELVEEAVFSAKENAALNGLENAVFIAGD---VSKKLREIK 371

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
           E            +   + VDPPRSG++   +  +  +    I+Y+SCNP+S  RDL + 
Sbjct: 372 E------------KPDIVVVDPPRSGVNPKALEDIVNFEPEKIIYVSCNPESFARDLRLF 419

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364
               + ++++   D FP+T H+E   LL +
Sbjct: 420 VDKGYAVKKVKAIDMFPHTYHVELVGLLEK 449


>gi|313888449|ref|ZP_07822116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845478|gb|EFR32872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 542

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 157/380 (41%), Gaps = 37/380 (9%)

Query: 3   GTLLIDQY--EQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGD 56
           G      Y  +++L  K   + + +      +L++       +  HYR   +F +     
Sbjct: 77  GGCDFLNYSDDKELKWKEADVNKNLNKLAGLDLEVEEVIDSPDKTHYRNNMQFQV----S 132

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
           D    +F + +KE + I   +      N ++  M    +L+      L +I   T+    
Sbjct: 133 DGKIGLFAKNSKEIVSIKTCIMQKDSANQVLKIMWNYKKLKD-----LKRIGIRTNYKGD 187

Query: 117 AIVTLIYHR---LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            ++ L+  R    + D   +       +++    +      + + +     D ++ERL  
Sbjct: 188 ILLILVSKRGRLEIKDVLSDLIDAGVKSIYLNYNKEDKTHYSREFEKIYGDDTIEERLL- 246

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + Y+    SF Q N      + +  +   +    D + +LYCG G+ SL +A+   
Sbjct: 247 ---GINYKISPESFFQINGPATEKLYKKAIDYLEPKDDDKIYDLYCGVGSISLSVAKSGP 303

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +EI + +V+ AR N   N++   + V   ++E  + +  E                
Sbjct: 304 EVIGIEIVESAVDDARENAEKNNIK-ARFVHGPAEETIEKLWEE-----------EKIAP 351

Query: 293 KTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
             I VDPPR GLD+  V  ++  P   ++YISCNP +  RDL  L   + +E++++ + F
Sbjct: 352 NKIIVDPPRKGLDEKLVNFLKENPVERLVYISCNPATQARDLKSLKEVYKVEKISVVNLF 411

Query: 351 PYTRHMECGVLLVRKPSGWH 370
           P T H E   LL +  +  H
Sbjct: 412 PNTAHCETVALLSKLNTEHH 431


>gi|328887534|emb|CAJ67227.2| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile]
          Length = 453

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 146/395 (36%), Gaps = 49/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54
             TLL   YE+QL  K  ++  + L      FQ   ++    E  +YR + E  F     
Sbjct: 79  GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 137

Query: 55  GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102
              L   +  +     ++ ++  M                 N   +    T+  +  LR 
Sbjct: 138 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156
            + +    T++    IVT        + +++  +       L   LH     +    + +
Sbjct: 198 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           + ++   RDY+ E +      L ++    SF Q N      +              ++ +
Sbjct: 258 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +  + ++ 
Sbjct: 314 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I VDPPR G+    +  +  +    I+YISCNP SL  DL 
Sbjct: 373 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 418

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
                 + I+ +   D FP T H+EC  L+ R  S
Sbjct: 419 DFKGYGYEIKMVKCMDMFPNTPHVECIALIQRVKS 453


>gi|153814681|ref|ZP_01967349.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756]
 gi|145848175|gb|EDK25093.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756]
          Length = 458

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 155/394 (39%), Gaps = 48/394 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP--IHYRMRAEFHI---WH 53
            G +     YE+Q+  K  ++R++M          +  ++ P    YR + EF     + 
Sbjct: 84  GGCMYQTMPYEEQMKMKEGQIRRIMDEAVDGEYLFEGVKASPKEFAYRNKMEFSFGDEYK 143

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRA 102
           DG     +     T + +           +N +++ ++   +               LR 
Sbjct: 144 DGPLSLGLHKKGSTYDVLTASDCKLVHEDMNKILVCVLEYFKERKVSYYKKMQHVGYLRH 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRAN 156
            L +    T +    +VT            E  ++L         LH     +  + +++
Sbjct: 204 LLLRRGDTTGEILVNLVTTTQEEYDLSELTEQLLQLPLEGKIVGILHILNDSLSDVVKSD 263

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215
           +T++   +D+  E+L      L ++    SF QPN      + E V      I    + +
Sbjct: 264 ETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYETVREYIGDIHDLTVFD 319

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           L+ G G  S  LA    +V+ VEI + +VEAA+ N   N ++N + +     E    ++ 
Sbjct: 320 LFSGTGTISQALAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCEFIAGDVFEVLDDIKE 379

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
                          +   I +DPPR G+    +  +       I+YISC   SL RDL 
Sbjct: 380 ---------------KPDVIILDPPRDGIHPKALPKILDYGVDRIVYISCKMTSLARDLE 424

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
           ++    +T+E++   DQF  T H+E  VLL RKP
Sbjct: 425 LIQQRGYTVEKMTAVDQFCETVHVETAVLLTRKP 458


>gi|148358986|ref|YP_001250193.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila
           str. Corby]
 gi|296107035|ref|YP_003618735.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila
           2300/99 Alcoy]
 gi|189045733|sp|A5IBU7|RUMA_LEGPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|148280759|gb|ABQ54847.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila
           str. Corby]
 gi|295648936|gb|ADG24783.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila
           2300/99 Alcoy]
          Length = 444

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 151/378 (39%), Gaps = 34/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L     E+Q+  K   L  ++  +     Q   S       +YR +A          
Sbjct: 85  GCSLQHMSAEEQIRFKQSHLLDLLSRYGHTEPQSVLSPLTSHHWNYRNKARLSTRFVEKK 144

Query: 58  LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
              ++  ++         I+     +  I+  ++ +   I      +  + QI+     +
Sbjct: 145 QSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMED-KHCIAQIEVAAGDN 203

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDER 170
           + A++     R L     +  +++R+     +Y++ L      +  C        Y+   
Sbjct: 204 EVALI----FRNLSPLTEQDELKIREFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYE 259

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L     T  +    N FTQ NA +N  M+   +   +    D +L+L+CG GNFSL +A+
Sbjct: 260 LPDYQITFQFH--PNDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAK 317

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           H  RV+ VE  K  VE A  N  +NH+ NV     +  +  +              ++ +
Sbjct: 318 HCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEV------------RNLVN 365

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346
             F  + +DPPRSG  +    +    P  I+Y+SCNP +L RD  IL     + +    +
Sbjct: 366 TSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGV 425

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E   L  +
Sbjct: 426 MDMFPHTAHVESIALFQK 443


>gi|284042250|ref|YP_003392590.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684]
 gi|283946471|gb|ADB49215.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684]
          Length = 456

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 143/383 (37%), Gaps = 43/383 (11%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDG----DD 57
           I  YE+QL  K  ++   +              +   E   YR + E+    +G     +
Sbjct: 91  ILPYERQLEIKSKQVDDALRRIGKLGGFELEPIVPALETWRYRNKLEYSFGTEGTAERGE 150

Query: 58  LYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
           L          +R+  I   M  S   NA+  +++A  R + L           LR  + 
Sbjct: 151 LIFGFHAPGEWDRIVPIADCMLASERGNAVRDQVLAFCREQGLTAYDRRTRRGFLRNCVI 210

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +    T Q    +VT+     LD      A+     L  +   +        T++    D
Sbjct: 211 REGRRTGQFQVRLVTMPGE--LDREAFAEAVDCDGLLWTQFDGLGETTAEGDTELIAGSD 268

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           Y++E L      + +R   N+F Q N  +   +       A+      L +LYCG G   
Sbjct: 269 YLEEEL----NGMSFRVSPNAFFQVNTEMAEKLYALAGDYASLAGFERLYDLYCGIGTVG 324

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L +A     +  +EI + ++  A  N   N ++N +      +   + +           
Sbjct: 325 LTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFFAGDVRTALRLLVD--------- 375

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTI 341
               +     + VDPPR+GL    V  +   +   ++YISCNP +L  + + L+   + +
Sbjct: 376 ---TAGSPDVVVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPNGAQLAEAGYVL 432

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
            ++   D FP T H+EC  L  R
Sbjct: 433 RKVRPVDMFPQTPHIECVALFER 455


>gi|254974048|ref|ZP_05270520.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-66c26]
 gi|255091449|ref|ZP_05320927.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           CIP 107932]
 gi|255313180|ref|ZP_05354763.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-76w55]
 gi|255515867|ref|ZP_05383543.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-97b34]
 gi|255648960|ref|ZP_05395862.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-37x79]
 gi|306519078|ref|ZP_07405425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
           QCD-32g58]
          Length = 451

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 145/393 (36%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54
             TLL   YE+QL  K  ++  + L      FQ   ++    E  +YR + E  F     
Sbjct: 79  GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 137

Query: 55  GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102
              L   +  +     ++ ++  M                 N   +    T+  +  LR 
Sbjct: 138 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156
            + +    T++    IVT        + +++  +       L   LH     +    + +
Sbjct: 198 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKAELVGVLHTINDGLADAVQCD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           + ++   RDY+ E +      L ++    SF Q N      +              ++ +
Sbjct: 258 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +  + ++ 
Sbjct: 314 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I VDPPR G+    +  +  +    I+YISCNP SL  DL 
Sbjct: 373 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 418

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
                 + I+ +   D FP T H E  V L+R+
Sbjct: 419 DFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 451


>gi|313674919|ref|YP_004052915.1| 23S rRNA m(5)u-1939 methyltransferase [Marivirga tractuosa DSM
           4126]
 gi|312941617|gb|ADR20807.1| 23S rRNA m(5)U-1939 methyltransferase [Marivirga tractuosa DSM
           4126]
          Length = 466

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 145/401 (36%), Gaps = 53/401 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG- 55
                   Y+ QL  K ++++  +      +L      +       YR + E+   ++  
Sbjct: 82  GCKWQHLSYDDQLGFKSEQVKDALERIAKVDLPEIKAILGSKNTTFYRNKMEYTFSNNRW 141

Query: 56  -------------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-- 100
                         D       ++  + ++I+     +   NA+   +    +   +   
Sbjct: 142 LTTEEIESGKEFESDALGFHIPKRFDKIVQIEKCYLQADPSNAIRNSVDRFAKDNNITYF 201

Query: 101 -----RAKLFQIDYLTSQSDQAIVTL-------IYHRLLDDAWRECAIRLRDALHARKYQ 148
                   L  +   TS + Q +V L        +  ++ +  +E    L   L+    +
Sbjct: 202 NLIKQVGFLRNLIIRTSSTGQTMVILQVAEDNEEWLSMMLNHIKENFPELTSLLYILNQK 261

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                      +   +D++ E +      L ++    SF Q N+      L  V      
Sbjct: 262 GNETFHDLDVNVFYGKDHIIEEM----EGLQFKIGPKSFYQTNSDQAYE-LYKVARDFAN 316

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++G+  + +LY G G  +  LA+   +V+ VE    ++E A+ N   N + N +      
Sbjct: 317 LKGEETVYDLYTGTGTIANFLAKSAKKVIGVEYVTEAIEDAKVNSKLNEIENTEFFSGDM 376

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
           K+               +  +   +   I  DPPR+G+    +  +       I+Y+SCN
Sbjct: 377 KDVFND-----------EFLVEHGKADVIITDPPRAGMHPDVIKTLLNIGAEKIVYVSCN 425

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +  RDL++L   + + ++   D FP T H+E  VLL  K
Sbjct: 426 PATQARDLALLDEKYKVTKVQPVDMFPQTHHVENVVLLELK 466


>gi|116495254|ref|YP_806988.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           casei ATCC 334]
 gi|116105404|gb|ABJ70546.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus casei ATCC
           334]
          Length = 455

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 137/383 (35%), Gaps = 47/383 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D + Q +  F+            I  ++P HYR +A+F +      +   +
Sbjct: 91  YPAQLRFKRDVVAQSLAKFKPTGWTHYDLRPTIGMAQPTHYRNKAQFPVRVIDGHVRAGL 150

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + +  F+               ++  L I +    +   +++  + +  + T
Sbjct: 151 YAPNSHHLIPLTKFLTQAPLTMKVVTTLCQILEQLQIPIYNEKKRSGIVKTLVVRESFAT 210

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
               +  VT I +        E    +   L       Q I           ++++    
Sbjct: 211 K---EVQVTFITNSPKLPHEGELLNGIATQLPMVVSIAQNINPGETSLIWGKESRLLAGL 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
            Y+ E L        ++    +F Q N      +      A   G    L++ YCG G  
Sbjct: 268 PYIQETLL----GRTFQLSPQAFLQLNPKQTETLYTLAAKALDLGPHDTLIDAYCGIGTV 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA+    +  ++     +  A+ N  AN + N       +++      +E       
Sbjct: 324 GISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFPKWVQE------- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                  +   + VDPPR+GL+ A +  +     P  +YISCNP +L RDL  L+  + +
Sbjct: 377 -----GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLARDLVFLTKRYKV 431

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   D FP T   E  V   R
Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTR 454


>gi|54297367|ref|YP_123736.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila
           str. Paris]
 gi|59800221|sp|Q5X5A8|RUMA_LEGPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|53751152|emb|CAH12563.1| hypothetical protein lpp1412 [Legionella pneumophila str. Paris]
          Length = 444

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 150/378 (39%), Gaps = 34/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L     E+Q+  K   L  ++  +     Q   S       +YR +A          
Sbjct: 85  GCSLQHMSAEEQIRFKQSHLLDLLSRYGHTEPQSVLSPLTSHHWNYRNKARLSTRFVEKK 144

Query: 58  LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
              ++  ++         I+     +  I+  ++ +   I      +  + QI+     +
Sbjct: 145 QSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMED-KHCIAQIEVAAGDN 203

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDER 170
           + A++     R L     +  +++R+     +Y++ L      +  C        Y+   
Sbjct: 204 EVALI----FRNLSPLTEQDELKIREFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYE 259

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L     T  +    N FTQ NA +N  M+   +   +    D +L+L+CG GNFSL +A+
Sbjct: 260 LPDYQITFQFH--PNDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAK 317

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           H  RV+ VE  K  VE A  N  +NH+ NV     +  +  +               + +
Sbjct: 318 HCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEV------------RSLVN 365

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346
             F  + +DPPRSG  +    +    P  I+Y+SCNP +L RD  IL     + +    +
Sbjct: 366 TSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGV 425

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E   L  +
Sbjct: 426 MDMFPHTAHVESIALFQK 443


>gi|222528478|ref|YP_002572360.1| TrmA family RNA methyltransferase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455325|gb|ACM59587.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor bescii DSM
           6725]
          Length = 451

 Score =  247 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 147/385 (38%), Gaps = 38/385 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L+  +Y+ Q + K   +            +I        P  YR +    +  D   
Sbjct: 80  GCHLMHAKYQHQRSLKKLLVEDAFRRIGKLTPKINDVIGMENPFRYRNKTALPVGGDYKK 139

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
                + + T + + IDY +               LI    IE+    + + +LR  + +
Sbjct: 140 PQIGFYKKMTHDIVDIDYCLIQHEFCDNVIKGMKDLIRKHKIEVYDEKKHKGVLRHIVVR 199

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
             +     D+ ++ L+  + + +        + D           +       I  + D 
Sbjct: 200 NSFA---FDEMMLILVCTK-VPENLEAIKKDILDRFPKIASFFVNLNPKRTNVILGEEDI 255

Query: 167 VDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           +      +      L +     SF Q N+     +   V+   + I  + + ++Y G G 
Sbjct: 256 LIWGSSTIKDKIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIVFDVYSGIGT 315

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            S+ +A    +V A+E+ + +VE A+ N   N+++N++ +  S++              +
Sbjct: 316 ISMFIAPFCKKVYAIELVRDAVEDAKKNSKNNNISNIEFICGSAE------------IEI 363

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTH 339
             +       + + +DPPRSG +   +  +     P+I+Y+SCNP +L RD SIL    +
Sbjct: 364 PKLLKSGIVPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILCSNGY 423

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +  +   D FP T H+EC  L  +
Sbjct: 424 EVVEVQPVDMFPQTFHVECVALFKK 448


>gi|260437263|ref|ZP_05791079.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
 gi|292810573|gb|EFF69778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
           DSM 2876]
          Length = 453

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 148/400 (37%), Gaps = 63/400 (15%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW---- 52
            G       YE QLA K  ++++++      + +            YR + EF       
Sbjct: 79  GGCAYQSVSYENQLAIKEGQVKKLIDNVCS-DYEFLGITGSPVTTAYRNKMEFTFGDEFK 137

Query: 53  --------HDGDDLYHIMFDQQTKE---------RMRIDYFMPGSLLINALMIEMMATIR 95
                   H  +  Y I+     +          ++ +DYF       N   +     + 
Sbjct: 138 DGPLSLGLHKKNSFYDILTVTGCRNIDEDYSKILKITVDYF-------NEKKLPFYHKMT 190

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR------LRDALHARKYQI 149
            E  LR  L +  Y T +    I+T          + E   +      L   LH     +
Sbjct: 191 HEGYLRNLLVRKAYKTGEIIIDIITSTQIDFDLSEYVELLKKADYKGTLNGILHTVNDSL 250

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                   TK+   +DY+ E L      L ++    SF Q N+     +          I
Sbjct: 251 ADAVINEGTKVLYGKDYIYEELL----GLKFKITPFSFFQTNSLGAEVLYTKTREFVGEI 306

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              ++ +LY G G  + +LA    +V+ VEI + +V AAR N   N ++N + +      
Sbjct: 307 DNQVVFDLYSGTGTIAQILAPVAKKVVGVEIIEEAVVAARENARLNGLDNCEFIAGDV-- 364

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326
                        LK ID    +   I +DPPR G+    +  +  +    I+Y+SC P 
Sbjct: 365 -------------LKVIDDIKDKPDMIVLDPPRDGIHPKAIDKIIDFGVNKIVYVSCKPT 411

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           SL RD+ I     + ++++   D FP T H+E  VL+ RK
Sbjct: 412 SLARDIEIFEARGYKVKKVCCVDMFPGTGHVETVVLMSRK 451


>gi|332071886|gb|EGI82374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae GA17545]
          Length = 374

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 143/380 (37%), Gaps = 40/380 (10%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDL 58
           +   Y++QL  K D L Q +  F     +       I   EP +YR + +F      + +
Sbjct: 1   MHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKFKNQV 60

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQID 108
              ++ Q +   + +   +        +   +   +    +          +R  + +  
Sbjct: 61  KAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIMVRRA 120

Query: 109 YLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
             T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I   ++
Sbjct: 121 RKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEIIWGQE 179

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFS 224
            + E +        +     +F Q N      +  E V A     +  L++ YCG G   
Sbjct: 180 SIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGVGTIG 235

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
              A+    +  ++I   ++E A+ N      +N      +++E      +E        
Sbjct: 236 FAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE-------- 287

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342
                YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   + + 
Sbjct: 288 ----GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDLH 343

Query: 343 RLALFDQFPYTRHMECGVLL 362
            +   D FP+T   E  V L
Sbjct: 344 YIQSVDMFPHTARTEAVVKL 363


>gi|193213715|ref|YP_001999668.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327]
 gi|193087192|gb|ACF12468.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327]
          Length = 479

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 155/408 (37%), Gaps = 61/408 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPN--LQIFRSEPIHYRMRAEFHIWH--- 53
               +   YE QL  K  ++   +     F+ P+    +   + +HYR + EF   +   
Sbjct: 88  GCKWMHVGYEAQLRYKHKKVTDSLVHIGGFENPDVLPVLAAPDALHYRNKVEFSCSNMRY 147

Query: 54  -----------DGDDLYHIMFDQQTK--ERMRIDYFMPGSLLINAL-----------MIE 89
                           + + F       + + +D        +N +            + 
Sbjct: 148 LLQSEIDSDELSKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVLNVVRDFALERGLA 207

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
             A    E  LR  + +    + + DQ +V ++      +  +    RL  A+  ++  +
Sbjct: 208 PYAAKAHEGYLRNLMLR---YSERHDQLMVNIVTSWHDAELMQALKERLEVAMPEQQMTL 264

Query: 150 --------QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
                     +    +  +     YV ERL      L +R   NSF Q N      + + 
Sbjct: 265 LNNVTTRKNTVATGEQEYVISGDGYVTERLG----DLDFRISANSFFQTNTRQAETLYDQ 320

Query: 202 VLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           ++A       D + +LYCG G  +L LARH  + + +E+ + +V  A+ N   N ++N  
Sbjct: 321 IIAVGSITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVRDAQMNAELNGLSNTV 380

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HI 318
             +   K F  AM+   E            + + I  DPPR+G+    +  M++  P  I
Sbjct: 381 FFQADLKNF-HAMQEALE---------PYAKPRIIVTDPPRAGMHPKALDTMLKLQPERI 430

Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +Y+SCNPD+L RD   ++   + +      D FP T H+E      R+
Sbjct: 431 VYVSCNPDNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFERE 478


>gi|325912172|ref|ZP_08174570.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 143-D]
 gi|325476122|gb|EGC79290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 143-D]
          Length = 457

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 151/386 (39%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y+ QL  K + ++  +L F   N Q       I   +  +YR +A++ I +  + 
Sbjct: 88  LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKIKNTIPAPKQWYYRNKAQYQIENIKNK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +   M+  ++++ + +      S            LI  + I +  +   +  ++  + +
Sbjct: 148 ISLGMYAPKSQKIIDLPIMPTQSKNTQKVEFAIKKLIEKMHIAIADSRYKKDGIKTVVVR 207

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
             + T +    +VT+  +    D   E  I L + +            +   NKT   + 
Sbjct: 208 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           ++Y+ E++        +     +F Q N      +    L   +     +L + Y G G 
Sbjct: 268 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSVLVDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    M+++      
Sbjct: 324 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 377

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL+   V  +        +YISCNP +L RDL +LS  + 
Sbjct: 378 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 432 VRLIQPVDMMPQTPRWEGIAKLVLRK 457


>gi|302191196|ref|ZP_07267450.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           iners AB-1]
          Length = 457

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 150/386 (38%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y+ QL  K + ++  +L F   N Q       I   +  +YR +A++ I    + 
Sbjct: 88  LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKVKNTIPAPKQWYYRNKAQYQIESIKNK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +   M+  ++++ + +      S            LI  + I +  +   +  L+  + +
Sbjct: 148 ISLGMYAPKSQKIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGLKTVVVR 207

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
             + T +    +VT+  +    D   E  I L + +            +   NKT   + 
Sbjct: 208 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           ++Y+ E++        +     +F Q N      +    L   +     +L + Y G G 
Sbjct: 268 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    M+++      
Sbjct: 324 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 377

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL+   V  +        +YISCNP +L RDL +LS  + 
Sbjct: 378 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 432 VRLIQPVDMMPQTPRWEGIAKLVLRK 457


>gi|291514875|emb|CBK64085.1| 23S rRNA m(5)U-1939 methyltransferase [Alistipes shahii WAL 8301]
          Length = 469

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 140/398 (35%), Gaps = 60/398 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEF----HIWHDGDDLY 59
            Y +QL  K D++R  +       L      +  +E   YR + EF      W   +++ 
Sbjct: 91  PYGEQLRFKTDQVRDQLTRIGKIELPEIAPCLGSAETQFYRNKLEFTFADRRWLTREEIE 150

Query: 60  H---------------IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL 104
                            MFD+     + I          N + +E               
Sbjct: 151 SAGDIGDAPAVGFHIPGMFDK----VLDIRKCWLQPDPSNGIRMEAKRFCVENGYTFHNA 206

Query: 105 FQIDYL-------TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR--- 154
              + L       T+ + + +V ++++             L            ++     
Sbjct: 207 RSHEGLMRNMIVRTASTGEVMVIVVFNSDDRPRITALMDHLAAKFPEITSLFYIVNTKFN 266

Query: 155 ---ANKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
               +   +C   +D++ E +      L ++    SF Q N+     + +          
Sbjct: 267 DSVGDLDPVCYRGKDHIIEEM----EELRFKVGPKSFYQTNSAQAYELYKVARDFADLRP 322

Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           GD+L +LY G G  +   A    RV+ VE    ++  A+ N   N + N        K  
Sbjct: 323 GDVLYDLYTGTGTIANFCAARCARVVGVEYVPEAIADAKVNSELNGIENTVFYAGDMKAV 382

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                              + R   I +DPPR+G+D+  + ++   A   I+Y+SCNP +
Sbjct: 383 LDD-----------GFVAANGRPDVIILDPPRAGVDEPVIEVILRAAPERIVYVSCNPAT 431

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL ++   + +E +   D FP+T H+E  V LVR+
Sbjct: 432 QARDLQLMDAAYRVEAVQPVDMFPHTHHVENVVKLVRR 469


>gi|255099546|ref|ZP_05328523.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-63q42]
          Length = 451

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 144/393 (36%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54
             TLL   YE+QL  K  ++  + L      FQ   ++    E  +YR + E  F     
Sbjct: 79  GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 137

Query: 55  GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102
              L   +  +     ++ ++  M                 N   +    T+  +  LR 
Sbjct: 138 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156
            + +    T++    IVT          +++  +       L   LH     +    + +
Sbjct: 198 LVVRKGIHTNEIMVNIVTSSQEDFDMYEFKDMLLGIDLKSELVGVLHTINDGLADAVQCD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           + ++   RDY+ E +      L ++    SF Q N      +              ++ +
Sbjct: 258 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +  + ++ 
Sbjct: 314 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I VDPPR G+    +  +  +    I+YISCNP SL  DL 
Sbjct: 373 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 418

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
                 + I+ +   D FP T H E  V L+R+
Sbjct: 419 DFKGYGYEIKMVKCMDMFPNTPHCETVVKLIRE 451


>gi|269217160|ref|ZP_06161014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
           700122]
 gi|269129297|gb|EEZ60382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
           700122]
          Length = 376

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 143/389 (36%), Gaps = 51/389 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRA--EFHIWHDGDDLYH---- 60
            Y +QLA K + + ++   F        +    P+HYR +    F   +D          
Sbjct: 2   PYARQLARKREAVARLFAEFDGLEVAPVLGMDMPLHYRNKVVSPFVGVYDRKARRRRILC 61

Query: 61  IMFDQQTKERMRIDYFMP---GSLLINALMIEMMATIRLEPL--------LRAKLFQIDY 109
            M+++ T   +     +     +  I   + ++M  +R+EP         LR    ++ +
Sbjct: 62  GMYERGTHRVIDSSECLIENQVAKAIIQSVRQLMPKLRIEPYDEDADTGFLRHAQVRVGH 121

Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
            + +    +VT        + L         ++   +     +   +   +K +      
Sbjct: 122 ASGEVMVTLVTRDEAFPAGKRLARELVRRHPQITTVVQNVNTRRTNVIMGDKERTIYGPG 181

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223
           ++ + L      L +R    SF Q N+     +    +    G+ G+  +L+ YCG G  
Sbjct: 182 FILDELC----GLSFRISSRSFYQVNSEQTEVLYRTAVE-MAGLTGEETILDAYCGTGTI 236

Query: 224 SLVLARH------FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            LV A+          ++ VE    +V  AR N   N + + +     +  F + +  E 
Sbjct: 237 GLVAAKGIDGKPGAKHLIGVEERMDAVADARTNARHNGIGSAEFFSDDAGAFMRRLAAE- 295

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL 335
                            +F+DPPR+G     +    + A   I+Y+SCNP +  RD   L
Sbjct: 296 -----------GGSVDAVFMDPPRAGATPDFLKAACLLAPRRIVYVSCNPATQLRDARYL 344

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLV 363
               + ++ L   D FP+T H+E     V
Sbjct: 345 CDHGYRLDTLQPVDMFPHTEHVETIARFV 373


>gi|300814888|ref|ZP_07095119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300510978|gb|EFK38247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 428

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 161/376 (42%), Gaps = 35/376 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
               L  +YE+ L  K   +   +      ++++ +     +  +YR   +F +     +
Sbjct: 78  GCDFLNYKYEKSLDWKRQSVNNKLQRISELDIKVSKVNSSEKTFNYRNNMQFQV----KN 133

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
               ++ + +KE + I+Y +  S   N  +  +     L     AK+  +   T+  DQ 
Sbjct: 134 GKIGLYMKNSKEIVPIEYCLMQSTNANKTLKILTKFKNL-----AKIKTLGIRTNYKDQV 188

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL---IGRANKTKICLDRDYVDERLTVA 174
           ++ +     ++         +   + +    I         ++  +   ++Y++E++   
Sbjct: 189 MLIISSKEKINKLNLILGNLIDANVVSIYENINNRTNAHYGDEFNLLYGQEYLEEKI--- 245

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              L Y+    SF Q N     ++    +   +  + + + +LY G G  SL +A    +
Sbjct: 246 -NKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGVGTLSLEIASRKAQ 304

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
            L VEI + ++E AR N   N +   + +   S+E  + ++++              +  
Sbjct: 305 TLGVEIVEEAIEDARINAQKNKLQ-ARFICGKSEEILEKIQKD-----------EKIKMD 352

Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            I VDPPR G+D   V  +    Y  I+YISCNP +L RDL IL   + +E++ +FD FP
Sbjct: 353 KILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEKYKVEKVEIFDLFP 412

Query: 352 YTRHMECGVLLVRKPS 367
           YT H+EC  L+ R  S
Sbjct: 413 YTSHVECIALIQRVKS 428


>gi|125625220|ref|YP_001033703.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124494028|emb|CAL99028.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072030|gb|ADJ61430.1| putative RNA methyltransferase [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 513

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 140/405 (34%), Gaps = 55/405 (13%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWH-DGD 56
           ++   Y  QL  K D +RQ +  ++            +     + YR + +F +   +  
Sbjct: 85  IMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQ 106
            +   ++ + T   + +D  +     I  ++  +   I    L          +R  + +
Sbjct: 145 TVIAGLYQEGTHHLVNLDNCLVQDPKIQEIINHICRLIEKFDLPVYDERKIGGIRTVMVR 204

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------------RLRDALHARKYQ 148
               T +     VT     L    W E                      L +        
Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEASKRQKNSFVKFDKMLSALTEEFEEIVTV 264

Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVL 203
                    ++I  +R  V     E +T       +     +F Q N+     +  E V 
Sbjct: 265 AVNFHPKKTSEIYGERTQVLFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A        +++ YCG G     +A+    V  ++I   S+  AR N     + N     
Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321
             ++       +              +R   + VDPPR+GLDDA +  +  +P   ++Y+
Sbjct: 385 GKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYV 432

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           SCN  +L +DL +L+  + +E +   D FP+T   E  V L ++ 
Sbjct: 433 SCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKRD 477


>gi|291537472|emb|CBL10584.1| 23S rRNA m(5)U-1939 methyltransferase [Roseburia intestinalis
           M50/1]
          Length = 473

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/408 (22%), Positives = 150/408 (36%), Gaps = 62/408 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN------LQIFRSE-PIHYRMRAEFHIW-- 52
             T     YE+Q+  K  +++ ++ A           L I  S  P  YR + EF     
Sbjct: 81  GCTFQSLPYEEQIKMKEKQVKDLIDAVITEENKGYEFLPIKASPRPKAYRNKMEFSFGDE 140

Query: 53  HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLL 100
           +    L   M  + +  + + +            +            I     +R    L
Sbjct: 141 YKDGPLALGMHKRGSFYDIVNVGECQIVDEDFRRVLKITLEYFKEKQIPFYHKLRHTGYL 200

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLL----DDAWRECAIR----------LRDALHARK 146
           R  L +    T +    +VT      L    + A  E  ++          L+  LH + 
Sbjct: 201 RHFLVRKAAKTGEILVDLVTTTQMEELSGENESALLEGWVKKLCEEKYDGVLKGILHTKN 260

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
             +    +   T I   +D+  E L      L ++    SF Q N+     + +      
Sbjct: 261 DSVADTIKNEGTDILFGQDFFYEELL----GLKFKITPFSFFQTNSLGAEVLYQTAREFI 316

Query: 207 KGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                D     + +LY G G  + +L+    +V+ VEI + +V AAR N A N + N + 
Sbjct: 317 GDALDDEANQTVFDLYSGTGTIAQILSPVAKKVIGVEIVEEAVVAARENAALNGLTNCEF 376

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHIL 319
           +                   LK ID    +   I +DPPR G+    +  +  Y  P ++
Sbjct: 377 IAGDV---------------LKVIDTIGEKPDYIVLDPPRDGIHPKALEKIIRYNVPQMV 421

Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
           YISC P SL RDL +L    + ++++   D FP T ++E  VLL  K 
Sbjct: 422 YISCKPTSLARDLEVLQARGYQVKKVQCVDMFPSTGNVETVVLLSHKN 469


>gi|167752279|ref|ZP_02424406.1| hypothetical protein ALIPUT_00523 [Alistipes putredinis DSM 17216]
 gi|167660520|gb|EDS04650.1| hypothetical protein ALIPUT_00523 [Alistipes putredinis DSM 17216]
          Length = 469

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 142/398 (35%), Gaps = 60/398 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGDDLYH--- 60
            Y +QL  K +++R  +       L          E   YR + EF         Y    
Sbjct: 91  PYAEQLRFKTEQVRDQLARIGKVELPEIAPCLPSAETRFYRNKLEFTFAERRWLTYEEIA 150

Query: 61  ----------------IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---- 100
                            MFD+     + I+         NA+  E               
Sbjct: 151 EKGEIADAPALGFHIPGMFDK----VLDIEKCWLQPDPSNAIREETRRFCLEHGYTFHNP 206

Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR--- 154
              R  +  +   T+ + + +V +++H    +        L  A         +I     
Sbjct: 207 REHRGLMRNMVVRTASTGEVMVIVVFHADEREKIAALLDHLAAAFPEITSLFYVINEKFN 266

Query: 155 ---ANKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
               +   +C   +D++ ER+      L ++    SF Q N+     + +          
Sbjct: 267 DSTGDLEPVCYRGKDHIIERM----EGLQFKVGPKSFYQTNSAQAYELYKVARDFAALTG 322

Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            ++L +LY G G  +   A    +V+ VE    ++E AR N   N + N        K  
Sbjct: 323 KEILYDLYTGTGTIANFCAARCAKVVGVEYVPEAIEDARINSTLNGIGNTVFYAGDMKAV 382

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                         +    + R   I +DPPR+G+D+  + ++   A   I+Y+SCNP +
Sbjct: 383 LSD-----------EFIRRNGRPDVIILDPPRAGVDEPVIDVILRAAPERIVYVSCNPAT 431

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL+++   + +E +   D FP+T H+E  V LVR+
Sbjct: 432 QARDLALMDGAYRVEAVQPVDMFPHTHHVENVVKLVRR 469


>gi|325912561|ref|ZP_08174944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 60-B]
 gi|325477982|gb|EGC81111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           UPII 60-B]
          Length = 457

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 150/386 (38%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y+ QL  K + ++  +L F   N Q       I   +  +YR +A++ I    + 
Sbjct: 88  LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKVKNTIPAPKQWYYRNKAQYQIESIKNK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +   M+  ++++ + +      S            LI  + I +  +   +  ++  + +
Sbjct: 148 ISLGMYAPKSQKIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGIKTVVVR 207

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
             + T +    +VT+  +    D   E  I L + +            +   NKT   + 
Sbjct: 208 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           ++Y+ E++        +     +F Q N      +    L   +     +L + Y G G 
Sbjct: 268 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSVLVDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    M+++      
Sbjct: 324 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 377

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL+   V  +        +YISCNP +L RDL +LS  + 
Sbjct: 378 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 432 VRLIQPVDMMPQTPRWEGIAKLVLRK 457


>gi|269960399|ref|ZP_06174772.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834826|gb|EEZ88912.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 436

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 156/369 (42%), Gaps = 32/369 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L    Y+QQL  K   LRQ+M  F   ++++      E + YR RA   ++ D    
Sbjct: 90  GCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIELDAPVLGESLGYRRRARVSLFVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +N L+ E+ +T++       +L  ++ +   +  
Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKK-PEQLGHVELVLGDNGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I TL +   L +      + L     A+++   L       ++    D ++  +     
Sbjct: 209 CI-TLRHLSKLTEKETNSLLEL-----AKRHNASLYLMPETDQL----DLIEGEVPFYQE 258

Query: 177 -TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +      N+F Q N  +N  M+   +        + +L+L+CG GNFSL +A+    V
Sbjct: 259 AGVTVPFTPNNFIQVNQAVNQKMVAQAVEWLDPQSDERVLDLFCGLGNFSLPIAKRAKHV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE A  N + N +NN +    + ++              +     + +F  
Sbjct: 319 VGVEGVAEMVEKAANNASLNQINNAQFYHANLEQ------------DFEGQVWAAEQFDK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G       +       ++Y+SCNP +L RD  S+L   + + +L + D FP+
Sbjct: 367 VLLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPH 426

Query: 353 TRHMECGVL 361
           T H+E   L
Sbjct: 427 TSHLESMAL 435


>gi|239632134|ref|ZP_04675165.1| RNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239526599|gb|EEQ65600.1| RNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 455

 Score =  246 bits (629), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 139/383 (36%), Gaps = 47/383 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D + Q +  F+            I  ++P HYR +A+F +      +   +
Sbjct: 91  YPAQLRFKRDVVAQSLAKFKPTGWTHYDLRPTIGMAQPTHYRNKAQFPVRVIDGHVRAGL 150

Query: 63  FDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + +  F+               ++  L I +    +   +++  + +  + T
Sbjct: 151 YAPNSHHLIPLTKFLTQAPLTMKVVTTLCQILEQLQIPIYNEKKRSGIVKTLVVRESFAT 210

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
               +  VT I +        E    +   L       Q I           ++++    
Sbjct: 211 K---EVQVTFITNSPKLPHEGELLNAIATQLPMVVSIAQNINPGETSLIWGKESRLLAGL 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
            Y+ E L        ++    +F Q N      +      A   G+   L++ YCG G  
Sbjct: 268 PYIQETLL----GRTFQLSPQAFLQLNPKQTETLYTLAAKALDLGLHDTLIDAYCGIGTV 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA+    +  ++     +  A+ N  AN + N       +++      +E       
Sbjct: 324 GISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFPKWVQE------- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                  +   + VDPPR+GL+ A +  +     P  +YISCNP +L RDL  L+  + +
Sbjct: 377 -----GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLARDLVSLTKRYKV 431

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   D FP T   E  V  +R
Sbjct: 432 DWIQSIDMFPQTARCEAVVKFIR 454


>gi|312871819|ref|ZP_07731907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 3008A-a]
 gi|311092761|gb|EFQ51117.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 3008A-a]
          Length = 457

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 150/386 (38%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y+ QL  K + ++  +L F   N Q       I   +  +YR +A++ I    + 
Sbjct: 88  LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKVKNTIPAPKQWYYRNKAQYQIESIKNK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +   M+  ++++ + +      S            LI  + I +  +   +  ++  + +
Sbjct: 148 ISLGMYAPKSQKIIDLPIMPTQSKNTQKIEFTIKKLIEKMHIAIADSRYKKDGIKTVVVR 207

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
             + T +    +VT+  +    D   E  I L + +            +   NKT   + 
Sbjct: 208 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           ++Y+ E++        +     +F Q N      +    L   +     +L + Y G G 
Sbjct: 268 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    M+++      
Sbjct: 324 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 377

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL+   V  +        +YISCNP +L RDL +LS  + 
Sbjct: 378 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 432 VRLIQPVDMMPQTPRWEGIAKLVLRK 457


>gi|295397699|ref|ZP_06807772.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
           11563]
 gi|294974068|gb|EFG49822.1| 23S rRNA (uracil-5-)-methyltransferase [Aerococcus viridans ATCC
           11563]
          Length = 469

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 152/392 (38%), Gaps = 44/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML----AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
              L   +YE QL  K + ++  +        +    I    P  YR + E     DG  
Sbjct: 94  GAPLQFMKYEDQLTHKENLIKGYLAEAGFDTNLVKPIIGMDNPYRYRNKMELTFGVDGSL 153

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLFQ 106
             H   + +  + + ++  +     + A+   +           +     E LL   L +
Sbjct: 154 GMHQQGNYR--KVIDLEDSILAPEEMIAIKKVVSKWQKDYQFPGLDKDTKEGLLCNLLMR 211

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK------- 159
             + T +   AI  L       +A  +   RL +A         L       +       
Sbjct: 212 QSFATGEIMVAIYALEAPDAYTEAIEDLTQRLLNAQPRIVSFQWLKKNGGTERSYDNDVY 271

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYC 218
           +   RDY+++ L    +   +R   ++F Q N      M+E  +  A       +L+L+C
Sbjct: 272 LIHGRDYINDEL----QGFKFRIWPDTFFQVNPVQANKMVETAIDMAQVKEDMKVLDLFC 327

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G FSL LA     +  +EI + S+ +A+ N A N+++N   +   ++           
Sbjct: 328 GIGTFSLPLAAASKSLAGIEIVENSINSAKRNAADNNLDNTFFMASDAR---------AG 378

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL-SIL 335
              L D+     +   + +DPPR+G     +  +       I+Y+SC P SL  DL  +L
Sbjct: 379 LRVLPDVW---GQPDLLLLDPPRNGAGGKVMRAIGRFGTDRIVYVSCGPKSLAADLVWLL 435

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              + +  +   DQFP+T H+E  VLL +K +
Sbjct: 436 DFGYEVVEVQPIDQFPHTAHLENIVLLKKKEA 467


>gi|259500506|ref|ZP_05743408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           DSM 13335]
 gi|259167890|gb|EEW52385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           DSM 13335]
          Length = 461

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 150/386 (38%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y+ QL  K + ++  +L F   N Q       I   +  +YR +A++ I    + 
Sbjct: 92  LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKVKNTIPAPKQWYYRNKAQYQIESIKNK 151

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +   M+  ++++ + +      S            LI  + I +  +   +  L+  + +
Sbjct: 152 ISLGMYAPKSQKIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGLKTVVVR 211

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
             + T +    +VT+  +    D   E  I L + +            +   NKT   + 
Sbjct: 212 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 271

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           ++Y+ E++        +     +F Q N      +    L   +     +L + Y G G 
Sbjct: 272 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGT 327

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    M+++      
Sbjct: 328 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 381

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL+   V  +        +YISCNP +L RDL +LS  + 
Sbjct: 382 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 435

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 436 VRLIQPVDMMPQTPRWEGIAKLVLRK 461


>gi|313899252|ref|ZP_07832768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
 gi|312955932|gb|EFR37584.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
          Length = 453

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 156/388 (40%), Gaps = 41/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
           S  LL    + Q   K   ++ +    +   LQ    +   EP  YR +       D   
Sbjct: 80  SCQLLHMNAQGQRVFKNQSMQALCDRAKGMKLQTEDIVMMEEPWQYRNKVIIGFQKDRQR 139

Query: 58  LYHIMFDQQ-TKERMRIDYFM---PGSLLINALMIEMMATIRLEP--------LLRAKLF 105
                F ++ +   +              I A ++E+M  + +EP        L+R  + 
Sbjct: 140 RIQAGFYEEFSHRIIPYKCCPLHPEVCDSIIAGIVELMGKLHIEPYNEDQRKGLIRHVVV 199

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +   ++    Q ++ L+ +  +  A R     LR         +Q +    KT + L  +
Sbjct: 200 RYGAVSK---QIMIVLVLNSNVFPARRNFIQELRKRFPQITTIVQNVNT-RKTSVVLGDE 255

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW-VLAATKGIQGDLLELYCGN 220
               Y    +      + +R    SF Q N      + +  V       +  +L+ YCG 
Sbjct: 256 ERVLYGPGYIEDVLCGMTFRISAKSFYQINHEQTEVLYQRSVELLELSGKETVLDAYCGI 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   + ++R   +V+ VEI + +VE A+ N   N ++N++ V   +  +   +  E++  
Sbjct: 316 GTIGMYVSRFVKQVIGVEINRDAVEDAKINAKINQISNIRFVCEDAGRYMTRLAAEKK-- 373

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST- 337
                     R   + +DPPRSG  +  +  +V+  P  +LYISCNP +  RDL +    
Sbjct: 374 ----------RLDVVIMDPPRSGSSEDFIKSLVRMKPKQVLYISCNPQTQIRDLQMFERM 423

Query: 338 THTIE-RLALFDQFPYTRHMECGVLLVR 364
            + ++ +L   D FP+T H+E  V LVR
Sbjct: 424 GYRVQGKLVPVDMFPHTVHVESIVKLVR 451


>gi|332884588|gb|EGK04845.1| hypothetical protein HMPREF9456_00598 [Dysgonomonas mossii DSM
           22836]
          Length = 469

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 146/395 (36%), Gaps = 54/395 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            Y +QL  K  ++   +       L      +   +   YR + EF   +        + 
Sbjct: 91  PYAEQLKYKQKQVEDNLTRIGKIELPGIHHILGSEKTQFYRNKLEFTFSNKKWLTLEQIN 150

Query: 64  DQQT---------------KERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             ++                + + ID       + N +   +      +      LR + 
Sbjct: 151 SGESFDNMNALGFHIPGMFDKVLDIDKCWLQEDISNQIRNFIRQYCYDKNYTFFDLRNRG 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-----N 156
             +  +   TS + + +V ++++    D  +     +          + ++ +       
Sbjct: 211 GLMRNLIVRTSTTGELMVIVVFYDDEKDQQQYLLTAVATEFPQITSLLYIVNQKANDTIT 270

Query: 157 KTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
             ++ +    D + E +      L ++    SF Q N+    + L  +      + GD  
Sbjct: 271 DQEVLVWKGNDCIYEEM----EGLKFKIGPKSFYQTNSEQAYN-LYKIARDFANLSGDEL 325

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  +  +A    +V+ +E  + ++  AR N   N ++N        K+    
Sbjct: 326 VYDLYTGTGTIANFVAGKAKKVIGIEYVEDAILDARVNSQINKIDNTLFYAGDMKDILT- 384

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                     +D      R   I  DPPR+G+ D  +  +       I+Y+SCNP +  R
Sbjct: 385 ----------QDFINEHGRPDVIITDPPRAGMHDDVIKTILFAEPERIVYVSCNPATQAR 434

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DLS+L   + +E++   D FP+T H+E  VLLV+K
Sbjct: 435 DLSLLDEKYKVEKVQPVDMFPHTHHVENVVLLVKK 469


>gi|332710474|ref|ZP_08430421.1| 23S rRNA m(5)U-1939 methyltransferase [Lyngbya majuscula 3L]
 gi|332350805|gb|EGJ30398.1| 23S rRNA m(5)U-1939 methyltransferase [Lyngbya majuscula 3L]
          Length = 461

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 143/378 (37%), Gaps = 46/378 (12%)

Query: 12  QQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFDQ 65
           QQLA K +++ Q +              +    P+ YR +A + +       +    + +
Sbjct: 103 QQLA-KQNQVIQALKRIGGFSEPTVAPILTTDSPLGYRNKATYPLKRSATGSVQAGYYQK 161

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQS 114
            + + + ++        +N L+ E+   I+            +  LR    QI   T + 
Sbjct: 162 GSHQLINLNQCPVQDQRLNPLLGEIKQDIQQLGWSIYNESRHQGRLRHLSLQIGQQTGEM 221

Query: 115 DQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
              +VT   +    D   +  +    +L             +   ++T     + Y+ E 
Sbjct: 222 LLTLVTTDLNLKDLDIQGQTWLNRYPQLVGVCVNHNPHRSNVIFGSQTYCVAGQPYLRE- 280

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
                  L  R   ++F Q N      +L  ++        + +++ YCG G F+L LA+
Sbjct: 281 ---NFAGLELRLRPDTFFQVNTEAAEVLLNLIIKQLALKGHECVVDAYCGIGTFTLPLAQ 337

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              + + +E+   SVE A  N   N + NVK    S  +    +               +
Sbjct: 338 QVSQAIGIEVQAASVEQAEQNALINGITNVKFQAGSVDQLLPQL---------------T 382

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS--TTHTIERLA 345
                I +DPPR G   A + +++  A   I+YISCNP +L RDL +L     + +  + 
Sbjct: 383 IAPDIILLDPPRKGCSPAVIDILRQVAPKRIVYISCNPATLARDLKLLCLNGDYQLTHIQ 442

Query: 346 LFDQFPYTRHMECGVLLV 363
             D FP T H+EC   L 
Sbjct: 443 PADFFPQTSHVECAAFLE 460


>gi|194335110|ref|YP_002016970.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM
           271]
 gi|194312928|gb|ACF47323.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM
           271]
          Length = 478

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 83/404 (20%), Positives = 146/404 (36%), Gaps = 55/404 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH--- 53
               +   Y+ QL  K  ++   +              +   E  HYR + EF       
Sbjct: 87  GCKWMHVSYDAQLHYKKKKVADALEHIGGMHDIAVQPVLPAPEAFHYRNKVEFSCSSKRY 146

Query: 54  -----------DGDDLYHIMFDQQTK--ERMRIDYFMPGSLLINAL-----------MIE 89
                      D    + + F       + + ID        +N              +E
Sbjct: 147 LLPHELSMETLDKSKDFALGFHAPGNFEKVLEIDTCYLAKPSMNEALSATRAFALDRGLE 206

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----RLRDALHA 144
             A       LR  + +      +    IVT  Y R L +A+R+  +     R    ++ 
Sbjct: 207 PYAARAHTGFLRNLMLRYSEEHDELMVNIVTSWYDRELMEAYRDHLLERMKGRRMTIVNN 266

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
              +   +    K  +      + ERL      L +R   NSF Q N      + E ++ 
Sbjct: 267 VTTRKNTVSTGEKEYVVYGDGTLRERLG----DLHFRISANSFFQTNTRQAEALYEGIMR 322

Query: 205 ATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                Q D++ +LYCG G  +L LA    + + +E+ + S+  A  N  AN + N    +
Sbjct: 323 MAGLKQDDVVYDLYCGTGTITLYLAERCRQAVGLEVVESSIIDAAENAGANGIENAAFYQ 382

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYI 321
           +  K+F   +    ++             + I  DPPR+G+    +  +++  P  I+Y+
Sbjct: 383 VDLKDFHTLVPTLEQYGM----------PRVIVTDPPRAGMHPKALETLLRLQPETIVYV 432

Query: 322 SCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP +L RD   +    + +E +   D FP+T H+E      R
Sbjct: 433 SCNPANLARDGKEIVQQGYRLEEVQPVDMFPHTSHVETLACFRR 476


>gi|241889432|ref|ZP_04776733.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
 gi|241863975|gb|EER68356.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
          Length = 451

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 146/383 (38%), Gaps = 38/383 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ---VPN---LQIFRSE-PIHYRMRAEFHIWHDGDD 57
           L    YE+QL  K   L      +     P+   L+   S     YR + +F +      
Sbjct: 85  LAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVLKTLASPVTEGYRNKNQFPLAVRNGR 144

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           +   ++ + + + + I+  +        I  L  +++   ++E     K + + Y+ +++
Sbjct: 145 VIAGLYKEGSNDLVEINEDLALHENGNKITNLAKKLLGKYKVEISTNKKNYGVKYIATRT 204

Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG------RANKTKICLDR 164
                   VT + +        +    L+     +   + +           ++      
Sbjct: 205 SFYNGDVQVTFVANTDKIKNMDKVVNELKRERIVKSIILNITNDKDHLVMGTESVTLYGS 264

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ E++        Y     SF Q N      + + V+      + D+ L+ YCG G  
Sbjct: 265 DYIVEKIG----DTKYELSAKSFFQLNPPATKKLYDKVVEFAALKETDVVLDAYCGVGTI 320

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
              ++R+   V  V+I   ++E A  N+  N++ N   V   + +     ++        
Sbjct: 321 GQYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTYVAGDANKIVPRWKK-------- 372

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                   F    VDPPR GL      ++      I+Y+SCNP +L RDL +L+  + I 
Sbjct: 373 ----KGINFDVAIVDPPRVGLGPLAKNLLAVEAKKIVYVSCNPSTLARDLKVLTRKYKIR 428

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+   D FP T  +E  V L+RK
Sbjct: 429 RIQPVDMFPGTAAVEAVVELIRK 451


>gi|56751281|ref|YP_171982.1| RNA methyltransferase [Synechococcus elongatus PCC 6301]
 gi|56686240|dbj|BAD79462.1| probable RNA methyltransferase [Synechococcus elongatus PCC 6301]
          Length = 455

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 132/379 (34%), Gaps = 44/379 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH-DGDDLYHIMF 63
            Y  Q+  K   ++  M        +    I    P+ YR +  + +   D  ++    F
Sbjct: 94  DYPAQVEAKTVIVQDAMQRLGQLETEVQPTIAAPYPLGYRNKVSYPLRRSDRGEVQAGYF 153

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTS 112
            + +   + ++        +N L+  + A I                LR    +I   T 
Sbjct: 154 RKGSHRLINLNQCPVQDDRLNPLLAGIKADIAARDWPIYDEQTRSRGLRHLGLRIGQRTG 213

Query: 113 QSDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
           +    ++         +A  E  +     +                 ++T     R Y+ 
Sbjct: 214 EILITLIATDDQLPEVEAQAEQWLTDYPNVVGVCLNLNPSHGNRILGDETHCLAGRPYLI 273

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           E L      L +     +F Q N      +L  +    +G    L +LYCG G  +L LA
Sbjct: 274 ECL----DDLEFAIGPETFFQVNTEQAERLLPILKDFLRG-SDRLFDLYCGVGTLTLPLA 328

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
                VL +EI   SV  A+ N   N ++NV+    + +     +               
Sbjct: 329 SEVGSVLGLEILPESVVQAQQNADRNGISNVEFRAGAVEILLAQI--------------- 373

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT--HTIERL 344
                 + +DPPR G + A + ++  +    I Y+SCNP +L RDL  L     + +  +
Sbjct: 374 PESPDAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGDRYRLLLV 433

Query: 345 ALFDQFPYTRHMECGVLLV 363
              D FP T H+E   LL 
Sbjct: 434 QPLDFFPQTAHVETVALLE 452


>gi|312873042|ref|ZP_07733102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312874144|ref|ZP_07734178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2052A-d]
 gi|312875643|ref|ZP_07735644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2053A-b]
 gi|329920153|ref|ZP_08276984.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 1401G]
 gi|311088897|gb|EFQ47340.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090214|gb|EFQ48624.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091564|gb|EFQ49948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LEAF 2062A-h1]
 gi|328936607|gb|EGG33051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           SPIN 1401G]
          Length = 457

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 151/386 (39%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y+ QL  K + ++  +L F   N Q       I   +  +YR +A++ I +  + 
Sbjct: 88  LAHLDYDSQLLFKKELIKDSLLKFHPRNYQKIKIKNTIPAPKQWYYRNKAQYQIENIKNK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +   M+  ++++ + +      S            LI  + I +  +   +  ++  + +
Sbjct: 148 ISLGMYAPKSQKIIDLPIMPTQSKNTQKVEFAIKKLIEKMHIAIADSRYKKDGIKTVVVR 207

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
             + T +    +VT+  +    D   E  I L + +            +   NKT   + 
Sbjct: 208 QSHATDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           ++Y+ E++        +     +F Q N      +    L   +     +L + Y G G 
Sbjct: 268 KNYITEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    ++  A++N   N+V N + +  S ++    M+++      
Sbjct: 324 LGILASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------ 377

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL+   V  +        +YISCNP +L RDL +LS  + 
Sbjct: 378 ------GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 432 VRLIQPVDMMPQTPRWEGIAKLVLRK 457


>gi|224024090|ref|ZP_03642456.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM
           18228]
 gi|224017312|gb|EEF75324.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM
           18228]
          Length = 504

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 151/402 (37%), Gaps = 57/402 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFH-------------- 50
           YE Q+  K  ++   +       L  FR      + + YR + E+               
Sbjct: 119 YEDQIKYKQKQVFDNLTRIGKVELPEFRPILGSEKTMFYRNKLEYTFSNKRWLTEEEVKQ 178

Query: 51  -IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK-- 103
            + +D  +           + + I+       + N +   +             LR +  
Sbjct: 179 DVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNSIRDYAYAHNYPFFDLRTQEG 238

Query: 104 -LFQIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRA-NKT 158
            L  +   TS + + +V L      D+     +E    + D+       + +I    N T
Sbjct: 239 MLRNMMVRTSSTGELMVLLQCKITNDEELAKMKELLQYVADSFPEITSLLYVINNKCNDT 298

Query: 159 ------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
                 ++   +D++ E +      L ++    SF Q N+    + L  V     G++GD
Sbjct: 299 IGDLDVEVFSGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLEGD 353

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+  
Sbjct: 354 ELVYDLYTGTGTIANFVSRRARKVIGIEYVPEAIEDAKVNSQINGITNTLFYAGDMKDIL 413

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSL 328
                       +D      R   I  DPPR+G+ +  + ++ A     I+Y+SCNP + 
Sbjct: 414 T-----------EDFIREHGRPDVIITDPPRAGMHNDVINVILAAEPKRIVYVSCNPATQ 462

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
            RDL +L   + +  +   D FP+T H+E  VLL ++    H
Sbjct: 463 ARDLQLLDGKYKVTAVQPVDMFPHTHHVENVVLLEKREEPKH 504


>gi|197336274|ref|YP_002156880.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11]
 gi|226725398|sp|B5FAG4|RUMA_VIBFM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|197317764|gb|ACH67211.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio fischeri MJ11]
          Length = 438

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 95/369 (25%), Positives = 155/369 (42%), Gaps = 26/369 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58
              L   Q+E+Q+  K ++L+++M    V     +Q    E + YR RA   +       
Sbjct: 90  GCNLQHLQHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLMI-NKQT 148

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
             + F  + K+   I       +L+  L   + +   L   L+ K         Q+D   
Sbjct: 149 NQLDFGFRKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKNLGHVELVQADNGS 208

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V LI H  + D   +    L +    R   + L+  A+     L+    +E   +   T 
Sbjct: 209 VLLIRH--VADFNEKDHQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTK 262

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
           IY      F Q N  +N  M+E  L+     + D +L+L+CG GNFSL LA+    V+ +
Sbjct: 263 IY-FTPKDFIQVNRKVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGI 321

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E     V+ A+ N   NH++NV   + + +E               D    S +F  I +
Sbjct: 322 EGVDDMVQRAKLNAERNHLSNVSFYQANLEE------------EASDQVWASTKFTKILL 369

Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           DP R+G       + +  P  ++Y+SCNP +L RD  +L      + RL + D FP+T H
Sbjct: 370 DPARAGAAGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGH 429

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 430 LESMALFER 438


>gi|46447178|ref|YP_008543.1| putative rRNA methyltransferse [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|51316628|sp|Q6MAY1|Y1544_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1544
 gi|46400819|emb|CAF24268.1| putative rRNA methyltransferse [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 442

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 152/401 (37%), Gaps = 50/401 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
                   YE QL +K   ++ +   +    V    I  S P HYR + E     D    
Sbjct: 51  GCCWQQLPYELQLKQKEKSIQNLFKPYLNENVKWHSIIPSSPWHYRNKMELTFSSDKAGR 110

Query: 59  YH---IMFDQQTK------ERMRIDYFMPGSLLINAL----MIEMMATIRLEPLLRAKLF 105
            +   IM   +          +   +F   +  I        ++    I+    LR    
Sbjct: 111 RYLGLIMQGTRGHVFQMKECLLANGWFAQAARAIQKWWDNSDVQAYHAIKDRGSLRTLTL 170

Query: 106 QIDYLTSQSDQAIVT--LIYHRLLDDAWRECAIRLRDALH--------ARKYQIQLIGRA 155
           +    T      +       + L     +     LRD++         +   +IQ I + 
Sbjct: 171 REGLRTGDRLVMLTVSGNPDYALTKSQLQSFVQVLRDSIELSNSDQKLSVFLRIQQIAKG 230

Query: 156 NKTK----ICLDRDYVDERLTVAG-----RTLIYRQIENSFTQPNAGINVHMLEWVLA-A 205
             T     +    D++ E+L +       +TL +R   ++F QPN      +    L  A
Sbjct: 231 RPTNFYEMLLYGPDHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQALKLA 290

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                  + +LYCG G   +  A++   V+ +E+++ SV  AR N+  N ++NV I    
Sbjct: 291 DLSASHVVYDLYCGTGTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSNVTIKSGD 350

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
             +  +A+ +E           +S +   + VDPPR GLD   +  +     P ++YISC
Sbjct: 351 VGQVLEALSQE-----------NSLKPDVVMVDPPRIGLDAKAIKHILDLKAPKLVYISC 399

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           NP +   +L  L    + ++ +   DQFP T H+E   LL 
Sbjct: 400 NPKTQVMNLGPLIDGGYQLQIVQPVDQFPQTVHVENITLLT 440


>gi|331090275|ref|ZP_08339162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330401894|gb|EGG81469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 459

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 155/393 (39%), Gaps = 48/393 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP--IHYRMRAEFHI---WH 53
            G +     YE+Q+  K  ++R++M          +  ++ P    YR + EF     + 
Sbjct: 84  GGCMYQTMPYEEQMKMKEGQIRRIMDEAVDGEYLFEGVKASPKEFAYRNKMEFSFGDEYK 143

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRA 102
           DG     +     T + +           +N +++ ++   +               LR 
Sbjct: 144 DGPLSLGLHKKGSTYDVLTASDCKLVHEDMNKILVCVLEYFKERKVSYYKKMQHVGYLRH 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRAN 156
            L +    T +    +VT            E  ++L         LH     +  + +++
Sbjct: 204 LLLRRGDTTGEILVNLVTTTQEEYDLSELTEQLLQLPLEGKIVGILHILNDSLSDVVKSD 263

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215
           +T++   +D+  E+L      L ++    SF QPN      + E V      I+   + +
Sbjct: 264 ETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYETVREYIGDIRDLTVFD 319

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           L+ G G  S VLA    +V+ VEI + +VEAA+ N   N ++N + +     E    ++ 
Sbjct: 320 LFSGTGTISQVLAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCEFIAGDVFEVLDDIKE 379

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
                          +   I +DPPR G+    +  +       I+YISC   SL RDL 
Sbjct: 380 ---------------KPDVIILDPPRDGIHPKALPKILDYGVDRIVYISCKMTSLARDLE 424

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           ++    +T+E++   DQF  T H+E   LL RK
Sbjct: 425 LIQQRGYTVEKMTAVDQFCETVHVETVALLTRK 457


>gi|327314509|ref|YP_004329946.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
           F0289]
 gi|326945121|gb|AEA21006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
           F0289]
          Length = 478

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 147/403 (36%), Gaps = 61/403 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WHDGDDLY 59
            Y +QL  K  ++   +       L  FR          YR + EF      W+  ++L 
Sbjct: 91  PYAEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCASKRWYTAEELQ 150

Query: 60  HIMFDQQTKE-------------RMRIDYFMPGSLLINALMIEMMATIRLEPL------- 99
            +  D    E                I+       L N +  ++        +       
Sbjct: 151 ALPEDAGLSEGAIGFHITGAFDKVYPIEKCWLMDDLCNQIRNDIRDYALGTGMKFYDIRA 210

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
               L  I    S + + +V + +H   ++     A  L   +  R  QI  +   +  K
Sbjct: 211 QHGLLRDIMVRNSNTGEWMVLIQFHYD-EEEDDARAKALMQHVSDRFPQITSLFYVDNQK 269

Query: 160 -----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                      +    D++ E +      L ++    SF Q N     H+   V  A   
Sbjct: 270 GNDTFNDLDLIVFKGNDHIFETM----EDLKFKVGPKSFYQTNTEQAYHLYS-VARAFAA 324

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + G+  + +LY G G  +  +AR+  +V+ +E    ++E A+ N   N ++N        
Sbjct: 325 LTGNELVYDLYTGTGTIANFVARNARKVIGIEYVPEAIEDAKVNAEINKIDNTLFYAGDM 384

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324
           K+              +D          I  DPPR+G+    + ++   +   I+Y+SCN
Sbjct: 385 KDILT-----------EDFICRHGHPDVIITDPPRAGMHQDVISVILGASPKRIVYVSCN 433

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           P +  RDL++L   + +  +   D FP+T H+E  VLL ++ +
Sbjct: 434 PATQARDLALLDADYRVAAVQPVDMFPHTPHVENVVLLEKREA 476


>gi|126667181|ref|ZP_01738155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp.
           ELB17]
 gi|126628337|gb|EAZ98960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinobacter sp.
           ELB17]
          Length = 441

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 147/378 (38%), Gaps = 33/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW--HDG 55
             +L     E Q+A K + L++    F     +      R++ + YR +A   +      
Sbjct: 79  GCSLQHMSVEAQIAFKENTLKEHFTHFGGIEPEQWVKPLRADTLGYRRKARLGVRFVTAR 138

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           + +     ++ +     ID  +     I   ++ +   +        ++ Q++       
Sbjct: 139 ESVLVGFREKSSNFLTDIDRCLVLDPRIGERIMPLRELLHGMDAF-DRIPQVEVACGDDV 197

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLT 172
             +V     R ++D       +L          I L  +   T   +      + DERL+
Sbjct: 198 AVMV----FRNMEDLSAGDRSKLIVFGQNHDLHIYLQPKGPDTVHRIWPKSAGHQDERLS 253

Query: 173 --VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
             +    L        FTQ NA IN  M++  +       G+ +L+L+CG GNF+L LAR
Sbjct: 254 YSLPEFDLTLAFHPTDFTQVNASINQVMVKRAIDWLDVQPGERVLDLFCGLGNFTLPLAR 313

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIH 288
              +V+ VE     VE  R N A N ++NV         +FT                  
Sbjct: 314 RGGQVVGVEGDDAMVERGRENAALNGLDNVTFFGADLHGDFT-------------GQSWA 360

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLAL 346
              F  I +DPPRSG +D    +       I+Y+SCNP +L RD  ++    + + +  +
Sbjct: 361 KEGFDKILIDPPRSGAEDICQYLTAFNASRIVYVSCNPATLARDAGVMVRNGYRLVQAGV 420

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E   L  R
Sbjct: 421 MDMFPHTTHVESIALFER 438


>gi|296449152|ref|ZP_06890939.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296880869|ref|ZP_06904817.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP07]
 gi|296261971|gb|EFH08779.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP08]
 gi|296428156|gb|EFH14055.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
           NAP07]
          Length = 453

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 144/393 (36%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54
             TLL   YE+QL  K  ++  + L      FQ   ++    E  +YR + E  F     
Sbjct: 81  GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 139

Query: 55  GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102
              L   +  +     ++ ++  M                 N   +    T+  +  LR 
Sbjct: 140 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 199

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156
            + +    T++    IVT        + +++  +       L   LH     +    + +
Sbjct: 200 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKSELVGVLHTINDGLADAVQCD 259

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           + ++   RDY+ E +      L ++    SF Q N      +              ++ +
Sbjct: 260 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 315

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +  + ++ 
Sbjct: 316 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 374

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I VDPPR G+    +  +  +    I+YISCNP SL  DL 
Sbjct: 375 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 420

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
                 + I  +   D FP T H E  V LVR+
Sbjct: 421 DFKRYGYEIRMVKCMDMFPNTPHCETIVKLVRE 453


>gi|81299052|ref|YP_399260.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus
           elongatus PCC 7942]
 gi|81167933|gb|ABB56273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus
           elongatus PCC 7942]
          Length = 455

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 132/379 (34%), Gaps = 44/379 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH-DGDDLYHIMF 63
            Y  Q+  K   ++  M        +    I    P+ YR +  + +   D  ++    F
Sbjct: 94  DYPAQVEAKTVIVQDAMQRLGQLETEVQPTIAAPYPLGYRNKVSYPLRRSDRGEVQAGYF 153

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTS 112
            + +   + ++        +N L+  + A I                LR    +I   T 
Sbjct: 154 RKGSHRLINLNQCPVQDDRLNPLLAGIKADIAARDWPIYDEQTRSRGLRHLGLRIGQRTG 213

Query: 113 QSDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
           +    ++         +A  E  +     +                 ++T     R Y+ 
Sbjct: 214 EILITLIATDDQLPEVEAQAEQWLTDYPNVVGVCLNLNPSHGNRILGDETHCLAGRPYLI 273

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           E L      L +     +F Q N      +L  +    +G    L +LYCG G  +L LA
Sbjct: 274 ECL----DDLEFAIGPETFFQVNTEQAERLLPILKDFLRG-SDRLFDLYCGVGTLTLPLA 328

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
                VL +EI   SV  A+ N   N ++NV+    + +     +               
Sbjct: 329 SEVGSVLGLEILPESVVQAQQNADRNGISNVEFRAGAVEILLAQI--------------- 373

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT--HTIERL 344
                 + +DPPR G + A + ++  +    I Y+SCNP +L RDL  L     + +  +
Sbjct: 374 PESPDAVLLDPPRKGCEPAVIEVLRDRQPQRIAYVSCNPATLARDLQALCAGDRYRLLLV 433

Query: 345 ALFDQFPYTRHMECGVLLV 363
              D FP T H+E   LL 
Sbjct: 434 QPLDFFPQTAHVETVALLE 452


>gi|150015413|ref|YP_001307667.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
 gi|149901878|gb|ABR32711.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB
           8052]
          Length = 452

 Score =  246 bits (627), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 142/395 (35%), Gaps = 53/395 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             +     YE+QL    + ++++     V   +            YR + EF    +   
Sbjct: 79  GCSSQSIPYEKQLEFLSEEVKELFREANVDTGEYLGIQGSPNQWEYRNKMEFTFGDEAKG 138

Query: 58  ---LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103
                 +    ++   + +D           +            +     ++ E  LR  
Sbjct: 139 EPLSLGMHMRGKSFGILTVDECKLVDEDYRKIIRLTADYFREKDLPYYRIMKAEGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA---------LHARKYQIQLIGR 154
           + +    T    + +V L+    +D    E    LRD          +H           
Sbjct: 199 VIRKAQNTG---EILVNLVTTTQIDFDLGEYVKLLRDQSYKGNLVSIIHTENNSKSDAVI 255

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213
             K  +   +DY+ E L      L +     SF Q N      +   V       +   +
Sbjct: 256 PEKVNVLFGKDYIRETLL----ELQFNISPFSFFQTNTKGAESLYSIVKEFMGDSEEKIV 311

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G    ++A +  +V+ +E+ + +VEAAR N   N +NN + +     E  + +
Sbjct: 312 FDLYCGTGTIGQIVAPNAKKVIGIELIEEAVEAARENAKLNGLNNCEFIAGDVAEIIKTV 371

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
           +                +   I +DPPR+G+    +  V  +  P I+Y+SCNP +L  D
Sbjct: 372 K---------------VKPDIIILDPPRTGVHPKALDYVIKFNAPEIIYVSCNPKTLVND 416

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L +L    + + +  + D FP T H E  V L ++
Sbjct: 417 LRVLTEKGYKVIKTKVKDMFPNTPHAETVVRLTKE 451


>gi|297585038|ref|YP_003700818.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
 gi|297143495|gb|ADI00253.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
           MLS10]
          Length = 462

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 148/392 (37%), Gaps = 43/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    YE+QL  K + L Q    +             I    P HYR +++  +   
Sbjct: 87  GCQLQHVSYERQLQAKKELLEQAFSRYTKIPPHKLVIHDTIGMDNPWHYRNKSQMQVGQT 146

Query: 55  GDDL-YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQI 107
            DD     ++   + + + ID  +    L N +  E+   I    L       +  L + 
Sbjct: 147 EDDTVIAGLYAADSHDLVDIDECIVQHPLTNEVNRELKRIISDLKLSIYDKERKKGLVRS 206

Query: 108 DYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR-------KYQIQLIGRANKT 158
             + +  ++D+  +TL+  +           R+++A  +              +    +T
Sbjct: 207 LVVRTAFETDEWQLTLVISKKSFPKQDVFVARVKEAFPSVTSISLNVNPSDTPLVFGEQT 266

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217
           K       + ERL      L Y+    SF Q N      + + V   A       +++ Y
Sbjct: 267 KTIEGESSIRERLG----ELDYQLAPESFFQLNPAQTKVLYDIVKKMAGFKATDRVVDAY 322

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G+  +  A     +  ++I + +V  AR N A   + N      ++++     ++E 
Sbjct: 323 CGVGSIGIWAASEAGELRGMDITEAAVANARRNAAEAGIANAHYETGTAEDILMKWQKE- 381

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL 335
                       +   +I VDPPRSGLD   +    V     ++Y+SCNP +L ++   L
Sbjct: 382 -----------GFTADSIIVDPPRSGLDRTLIETVGVLKPKQLIYVSCNPSTLAKNADEL 430

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
               + I+ +   D FP T H+E   ++ R+ 
Sbjct: 431 GKYGYRIKDVQPVDMFPQTSHVEAVTVMYRED 462


>gi|146283009|ref|YP_001173162.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas stutzeri
           A1501]
 gi|145571214|gb|ABP80320.1| probable RNA methyltransferase [Pseudomonas stutzeri A1501]
          Length = 450

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 140/372 (37%), Gaps = 30/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI-WHDGD 56
             TL     + QLA K   L + +        +            YR RA   + WH  D
Sbjct: 99  GCTLQHAAIDDQLALKQRTLGEQLARLAELEPERWAEPLTGPAFGYRRRARLAVRWHTRD 158

Query: 57  DLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
               + F    +++ + ID        +  L+  ++  +         +  ++  +  ++
Sbjct: 159 KRLEVGFRATASQDIVAIDQCPVLVQPLQTLLPGLLEALHGL-TKPQAIGHVELFSGTAE 217

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             ++     R           RLR    A + Q+ L G +        +  +  RL    
Sbjct: 218 AVLI-----RHTAPLPEIDLARLRTFARAHQAQLWLQGDSEPQADVPGQ-ALGYRLEAWD 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   L+      G+ +L+L+CG GNFSL LAR   +V
Sbjct: 272 LELAWR--PGDFVQVNAPVNEAMVAQALSWLGASAGERVLDLFCGLGNFSLPLARQGAQV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE  +  V  A+ N   N +  V   R    +             L D       F  
Sbjct: 330 VGVEGVEAMVARAQDNAQRNGLEQVHFYRADLSK------------PLADAPWARSGFDA 377

Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    M Q     ++Y+SCNP +L RD   L S    ++R  L D FP 
Sbjct: 378 VLLDPPRDGALEIVRQMTQLQARRVVYVSCNPATLARDARELASQGFRLKRTGLLDMFPQ 437

Query: 353 TRHMECGVLLVR 364
           T H E   L  R
Sbjct: 438 TAHAEAMALFER 449


>gi|32034047|ref|ZP_00134291.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 229

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 113/228 (49%), Positives = 154/228 (67%), Gaps = 5/228 (2%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-----GDDL 58
            L I+QY   LAEK   L  ++  F  P L++F SE  H+RMRAEF +WHD      ++L
Sbjct: 2   NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETGHFRMRAEFRVWHDTNEVGENEL 61

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           YHIMFDQ+TK+R  ++ F   + LIN +M  ++A I+   LL  KLFQ+DYL++ S +  
Sbjct: 62  YHIMFDQETKQRYCVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V+++YH+ L++ W+  A  L+  L  + +++Q+IGRA K KI LDRDYV+E L V GR L
Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           IYRQ+ENSFTQPNA +N+ MLEW  + T+   GDLLELYCGNG F L 
Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGIFRLH 229


>gi|255654431|ref|ZP_05399840.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
           QCD-23m63]
          Length = 451

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 144/393 (36%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAE--FHIWHD 54
             TLL   YE+QL  K  ++  + L      FQ   ++    E  +YR + E  F     
Sbjct: 79  GCTLLSVPYEKQLEIKEKQVMDLFLKQDLFGFQFLGIE-GSPENKYYRNKMEYTFGDEVK 137

Query: 55  GDDLYHIMFDQQTKERMR-IDYFMPGSLLI-----------NALMIEMMATIRLEPLLRA 102
              L   +  +     ++ ++  M                 N   +    T+  +  LR 
Sbjct: 138 NGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKKLPYYRTMNHKGYLRH 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRAN 156
            + +    T++    IVT        + +++  +       L   LH     +    + +
Sbjct: 198 LVVRKGIHTNEIMVNIVTSSQEDFDMNEFKDMLLGIDLKSELVGVLHTINDGLADAVQCD 257

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           + ++   RDY+ E +      L ++    SF Q N      +              ++ +
Sbjct: 258 ELRVLYGRDYIQEEIL----GLKFKISPFSFFQTNTKGAEVLYSIARDFIGDYNDKVVFD 313

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G+   V+A    +V  +EI + +V AA  N   N + N + +     +  + ++ 
Sbjct: 314 LYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFIAGDVAKVVKDLK- 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
                          +   I VDPPR G+    +  +  +    I+YISCNP SL  DL 
Sbjct: 373 --------------DKPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDLV 418

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
                 + I  +   D FP T H E  V LVR+
Sbjct: 419 DFKRYGYEIRMVKCMDMFPNTPHCETIVKLVRE 451


>gi|191638764|ref|YP_001987930.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23]
 gi|190713066|emb|CAQ67072.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus casei BL23]
 gi|327382805|gb|AEA54281.1| RNA methyltransferase, TrmA family [Lactobacillus casei LC2W]
 gi|327385992|gb|AEA57466.1| RNA methyltransferase, TrmA family [Lactobacillus casei BD-II]
          Length = 455

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 138/383 (36%), Gaps = 47/383 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D + Q +  F+            I  ++P HYR +A+F +      +   +
Sbjct: 91  YPAQLRFKRDVVAQSLAKFKPTGWTHYDLRPTIGMAQPTHYRNKAQFPVRVIDGHVRAGL 150

Query: 63  FDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +   +   + +  F+  +            ++  L I +    +   +++  + +  + T
Sbjct: 151 YAPNSHHLIPLTKFLTQAPLTMKVVTTLRQILEQLQIPIYNEKKRSGIVKTLVVRESFAT 210

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDR 164
               +  VT I +        E    +   L       Q I           ++++    
Sbjct: 211 K---EVQVTFITNSPKLPHEGELLNAIATQLPMVVSIAQNINPGETSLIWGKESRLLAGL 267

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
            Y+ E L        ++    +F Q N      +      A   G    L++ YCG G  
Sbjct: 268 PYIQETLL----GRTFQLSPQAFLQLNPKQTETLYTLAAKALDLGPHDTLIDAYCGIGTV 323

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA+    +  ++     +  A+ N  AN + N       +++      +E       
Sbjct: 324 GISLAKGNQPIYGMDTIAEGIADAKANAKANGLTNAHYSVGKAEDIFPKWVQE------- 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                  +   + VDPPR+GL+ A +  +     P  +YISCNP +L RDL  L+  + +
Sbjct: 377 -----GMKPDAVIVDPPRAGLERAFIDALLELDPPKFVYISCNPSTLARDLVSLTKRYKV 431

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   D FP T   E  V   R
Sbjct: 432 DWIQSIDMFPQTARCEAVVKFTR 454


>gi|303263128|ref|ZP_07349055.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP14-BS292]
 gi|302635727|gb|EFL66235.1| RNA methyltransferase, TrmA family protein [Streptococcus
           pneumoniae SP14-BS292]
          Length = 443

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 142/380 (37%), Gaps = 40/380 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKENHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G      A+    +  ++I   ++E A+ N      +N      +++E      +E    
Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE---- 371

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT 338
                    YR   + VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   
Sbjct: 372 --------GYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423

Query: 339 HTIERLALFDQFPYTRHMEC 358
           + +  +   D FP+T   E 
Sbjct: 424 YDLHYIQSVDMFPHTARTEA 443


>gi|160944108|ref|ZP_02091338.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444784|gb|EDP21788.1| hypothetical protein FAEPRAM212_01610 [Faecalibacterium prausnitzii
           M21/2]
          Length = 458

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 138/393 (35%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPI-HYRMRAEFHIWHDGDD 57
             +L    Y  +L  K + +           VP L I  S  +  YR + +F +  D + 
Sbjct: 82  GCSLRHLDYAAELRAKQESVLDAFRRIGGLEVPVLDILPSPDVDRYRNKVQFPVGIDKNG 141

Query: 58  -LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKLF 105
                 +  +T   +          ++N +   + A    +            L+R    
Sbjct: 142 VPCIGFYAGRTHRIVPCPDCKLQPSVLNEIGNALCAFFAQQVIRPYDEQSGKGLVRHIFL 201

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRANKT 158
           +     + S Q +V L+  R       +    LR    A    +         +   ++ 
Sbjct: 202 RRG---AHSGQIMVCLVCTRAKLPHAEQLCTALRGQFPAISTILLNVNAKNTNVILGSEN 258

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
            I     Y+++ L      +  R    SF Q N      +        +    D LL+LY
Sbjct: 259 HILYGPGYIEDTLC----GVPVRLGPLSFYQVNTLAAERLYGVAAQYAQLTPDDTLLDLY 314

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV---KIVRMSSKEFTQAMR 274
           CG G   L +A     ++ VEI   ++E+A+ N A          +     + +    + 
Sbjct: 315 CGMGTIGLSMAGQCRELIGVEIVPEAIESAKANAARMGEAVAAKSRFFCADAGQAATQLA 374

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332
            E                  + +DPPR G D+AT+  V   A   ++Y+SCNP +  RD 
Sbjct: 375 AE------------GLHPDIVMLDPPRKGCDEATLSAVVRMAPRRVVYVSCNPATAARDA 422

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           + L    +  E++   D FP T+H+E  V   R
Sbjct: 423 AWLEQNGYHAEKVQPVDLFPRTKHVEACVCYTR 455


>gi|293402235|ref|ZP_06646373.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304342|gb|EFE45593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 453

 Score =  245 bits (625), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 153/391 (39%), Gaps = 46/391 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
           S  L+    + Q  +K+  L+++    +              P HYR +       D   
Sbjct: 80  SCHLMHVSVQGQKHQKLSYLQKLCAKNKQLHIKAEEIATMKHPYHYRNKMIIGFQKDKQG 139

Query: 58  LYHIMFDQQ-TKERMRIDYF---MPGSLLINALMIEMMATIRLEP--------LLRAKLF 105
                F ++ +   +  +           I   +  +M  +R+EP        LLR  + 
Sbjct: 140 KLQAGFYEEFSHHIIPYEQCLLHPEICDAILHTITTLMIKLRIEPYDEDKRRGLLRHVVI 199

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKT 158
           +   ++    Q +V L+ ++ +  A +     L          +Q +           + 
Sbjct: 200 RYGMVSK---QIMVVLVINQQIFPARKAFVQELLKKHPQITTIVQNVNTRKTSIVLGEQE 256

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
           +I     Y+++ L      L +R    SF Q N      + +  +   +    + +L+ Y
Sbjct: 257 RILYGPGYIEDTLC----GLQFRISAKSFYQINHEQCEVLYKKGMELLQLTGKETVLDAY 312

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   +  A+   +V+ VE+ K +VE A+ N   N + N++ V   + +F Q M  ++
Sbjct: 313 CGIGTIGMYAAQFAKQVIGVELNKDAVEDAKNNAKLNQIRNIRFVCDDAGKFMQKMAAKK 372

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
           E            R   + +DPPRSG  +A +  V       +LYISCNP +  RDL + 
Sbjct: 373 E------------RLDVVILDPPRSGSSEAFIRSVATIRPKKVLYISCNPQTQLRDLQLF 420

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRK 365
               +  + L   D FP T H+E  VL+ RK
Sbjct: 421 QKYGYVGDVLYGVDMFPNTFHVESIVLMTRK 451


>gi|283796109|ref|ZP_06345262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
 gi|291076323|gb|EFE13687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. M62/1]
          Length = 560

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 91/415 (21%), Positives = 153/415 (36%), Gaps = 65/415 (15%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAF-QVPNL--------QIFRSEPIHYRMRAEFHI 51
            G L     YE+QL  K  ++R+ +      P +         I       YR + EF  
Sbjct: 78  GGCLFQTFPYEEQLKIKEGQVREFLEGVLGTPGVSGTWNFEGIIGSPAAERYRNKMEFSF 137

Query: 52  WHDGDDL--YHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLE 97
             +  D      M  + +  + + +            +            I     ++  
Sbjct: 138 GDEVKDGPLALGMHKRGSFYDVVTVGGCRIVHEDFTKILLCTKEFFEERQIPFYKKMQQT 197

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIY------------HRLLDDAWRECAI------RLR 139
             LR  L +    T +    ++T                  L + WRE  +       L 
Sbjct: 198 GYLRHLLVRRAVKTGEILIDLITTTQTHTLQTEQFGGTEEELLNQWREKILSLSLEGTLA 257

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH +   +    +   T+I   +DY  E L      L +R    SF Q N+     + 
Sbjct: 258 GILHTKNDTLADAVKDEGTEILFGQDYFYEELL----GLKFRISPFSFFQTNSLGAEVLY 313

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E       G+ G ++ +LY G G  + +LA    +V+ VEI + +VEA+R N   N ++N
Sbjct: 314 EKTREYVGGVDGKVVFDLYSGTGTIAQILAPVAQKVVGVEIVEEAVEASRVNAERNGLSN 373

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYP 316
            + +                   LK +   + +   I +DPPR G+    +  +      
Sbjct: 374 CEFIAGDV---------------LKVVGELTDKPDLIVLDPPRDGIHPKAIEKIIDFGVE 418

Query: 317 HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
            ++Y+SC P SL RDL IL+   + +ER    D FP T ++E  VLL +  +  H
Sbjct: 419 RMVYVSCKPTSLARDLEILTARGYAVERACCVDMFPGTGNVETVVLLSKLNTKQH 473


>gi|304439903|ref|ZP_07399797.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371642|gb|EFM25254.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 415

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 147/374 (39%), Gaps = 40/374 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWHDGDD 57
              L+   Y+++L  K  ++   +             +   +P  YR   +  +     D
Sbjct: 70  GCPLIEMDYKRELEWKRSKVENAIRRIGKINREVEPTVENKKPFRYRNIVQLKV----QD 125

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                F + T E + ID        I  + ++++        +   + +I+Y      + 
Sbjct: 126 KKIGYFKKGTHEVLDIDDCKIAPEEIKNV-VKILKNWNGLSSIEQVIIRINY----QGEM 180

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTV 173
           +V L     L          L + L   K  I +    NKT+     +    Y  +++  
Sbjct: 181 MVILGTRTGLKKE-----NNLLEKLLDLKV-ISVYEDINKTRNHYGYELREIYKSKQMYE 234

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
                 +     +F Q N     ++    +   +  + D +++LY G G  SL +A   +
Sbjct: 235 KIGDHKFIVEPGTFLQVNPYQVENLYNLAVEGLELKKEDKVMDLYSGIGTISLKMAEQVE 294

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+AVE  + SVE AR N   N + NV+  R   ++ T+ + +              Y  
Sbjct: 295 SVIAVESFEGSVEIARKNAELNGIENVEFARGKVEDLTEKLEK--------------YTV 340

Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
             + +DPPR+G  +  +  +       I Y+SCNP +L RDL ILS  + IE++   D F
Sbjct: 341 NKVLLDPPRAGAKEEALRTIIKLNPERITYVSCNPSTLARDLQILSEKYKIEKIIPVDMF 400

Query: 351 PYTRHMECGVLLVR 364
            ++ H EC  LL R
Sbjct: 401 SHSSHCECVALLTR 414


>gi|52841686|ref|YP_095485.1| 23S rRNA 5-methyluridine methyltransferase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|60404654|sp|Q5ZVI4|RUMA_LEGPH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|52628797|gb|AAU27538.1| 23S rRNA (uracil-5-)methyltransferase RumA [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 444

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 150/378 (39%), Gaps = 34/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L     E+Q+  K   L  ++  +     Q   S       +YR +A          
Sbjct: 85  GCSLQHMSAEEQIRFKQSHLLDLLSRYGHTEPQSMLSPLTSHHWNYRNKARLSTRFVEKK 144

Query: 58  LYHIMFDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
              ++  ++         I+     +  I+  ++ +   I      +  + QI+     +
Sbjct: 145 QSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMED-KQCIAQIEVAAGDN 203

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVDER 170
           + A++     R L     +  +++R      +Y++ L      +  C        Y+   
Sbjct: 204 EVALI----FRNLTPLTEQDELKIRKFAEQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYE 259

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L     T  +    N FTQ NA +N  M+   +   +    D +L+L+CG GNFSL +A+
Sbjct: 260 LPDYQITFQFH--PNDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAK 317

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           H  RV+ VE  K  VE A  N  +NH+ NV     +  +  +              ++ +
Sbjct: 318 HCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEV------------RNLVN 365

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLAL 346
             F  + +DPPRSG  +    +    P  I+Y+SCNP +L RD  IL     + +    +
Sbjct: 366 TSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGV 425

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E   L  +
Sbjct: 426 MDMFPHTAHVESIALFQK 443


>gi|325859605|ref|ZP_08172738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
           CRIS 18C-A]
 gi|325482885|gb|EGC85885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
           CRIS 18C-A]
          Length = 478

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 145/403 (35%), Gaps = 61/403 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WHDGDDLY 59
            Y +QL  K  ++   +       L  FR          YR + EF      W+  ++L 
Sbjct: 91  PYAEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCASKRWYTAEELQ 150

Query: 60  HIMFDQQTKE-------------RMRIDYFMPGSLLINALMIEMMATIRLEPL------- 99
            +  D    E                I+       L N +  ++        +       
Sbjct: 151 ALPEDAGLSEGAIGFHITGAFDKVYPIEKCWLMDDLCNQIRNDIRDYALGTGMKFYDIRA 210

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
               L  I    S + + +V + +H   ++     A  L   +  R  QI  +   +  K
Sbjct: 211 QHGLLRDIMVRNSNTGEWMVLIQFHYD-EEEDDARAKALMQHVSDRFPQITSLFYVDNQK 269

Query: 160 -----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                      +    D++ E +      L ++    SF Q N     H+   V      
Sbjct: 270 GNDTFNDLDLIVFKGNDHIFETM----EDLKFKVGPKSFYQTNTEQAYHLYS-VARTFAA 324

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + G+  + +LY G G  +  +AR   +V+ +E    ++E A+ N   N ++N        
Sbjct: 325 LTGNELVYDLYTGTGTIANFIARDARKVIGIEYVPEAIEDAKVNAEINKIDNTLFYAGDM 384

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324
           K+              +D          I  DPPR+G+    + ++   +   I+Y+SCN
Sbjct: 385 KDILT-----------EDFICRHGHPDVIITDPPRAGMHQDVISVILGASPKRIVYVSCN 433

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           P +  RDL++L   + +  +   D FP+T H+E  VLL ++ +
Sbjct: 434 PATQARDLALLDADYRVAAVQPVDMFPHTPHVENVVLLEKREA 476


>gi|325269116|ref|ZP_08135736.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324988503|gb|EGC20466.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 474

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 83/401 (20%), Positives = 146/401 (36%), Gaps = 61/401 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WHDGDDLY 59
            Y +QL  K  ++   +       L  FR          YR + EF      W+  ++L 
Sbjct: 91  PYNEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCANKRWYTAEELQ 150

Query: 60  HIMFDQQTKE-------------RMRIDYFMPGSLLINALMIEMMATIRLEPLL------ 100
            +  D    E                I+       L N +  ++        +       
Sbjct: 151 ALPEDAGLSEGAIGFHITGAFDKVYPIEKCWLMDDLCNQIRNDIRDYALGTGMTFYDIRG 210

Query: 101 -RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
               L  I    S + + +V + +H   ++   E A  L   +  R  QI  +   +  K
Sbjct: 211 QHGLLRDIMVRNSNTGEWMVLIQFHYD-EEGDEERAKALMQHVADRFPQITSLSYVDNQK 269

Query: 160 ----------ICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                     I     DY+ E +      L ++    SF Q N     H+   V      
Sbjct: 270 GNDTFNDLDLITFKGNDYIFETM----EDLKFKVGPKSFYQTNTEQAYHLYS-VAREFAS 324

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + GD  + +LY G G  +  +A    +V+ +E    ++E A+ N   N+++N        
Sbjct: 325 LTGDELVYDLYTGTGTIANFVAGKARKVIGIEYVPEAIEDAKVNSEINNISNTLFYAGDM 384

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324
           K+              +D      R   I  DPPR+G+    + ++   +   I+Y+SCN
Sbjct: 385 KDILT-----------EDFISRQGRPDVIITDPPRAGMHPDVINVILGASPERIVYVSCN 433

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +  RDL++L   + +  +   D FP+T H+E  VLL ++
Sbjct: 434 PATQARDLALLDADYQVAAVQPVDMFPHTPHVENVVLLEKR 474


>gi|295105028|emb|CBL02572.1| 23S rRNA m(5)U-1939 methyltransferase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 457

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 77/393 (19%), Positives = 136/393 (34%), Gaps = 49/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPI-HYRMRAEFHIWHDGDD 57
             +L    Y  +L  K + +           VP L I  S  +  YR + +F +  D + 
Sbjct: 82  GCSLRHLDYAAELRAKQESVLDAFRRIGGLEVPVLDILPSPDVDRYRNKVQFPVGIDKNG 141

Query: 58  -LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKLF 105
                 +  +T   +          ++N +   + A    +            L+R    
Sbjct: 142 VPCIGFYAGRTHRIVPCPDCKLQPSVLNEIGNALCAFFAQQVIRPYDEQSGKGLVRHIFL 201

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRANKT 158
           +     + S Q +V L+  R       +    LR    A    +         +   ++ 
Sbjct: 202 RRG---AHSGQIMVCLVCTRAKLPHAEQLCTALRGQFPAISTILLNVNAKNTNVILGSEN 258

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
            I     Y+++ L      +  R    SF Q N      +        +    D LL+LY
Sbjct: 259 HILYGPGYIEDTLC----GVPVRLGPLSFYQVNTLAAERLYGVAAQYAQLTPDDTLLDLY 314

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV---KIVRMSSKEFTQAMR 274
           CG G   L +A     ++ VEI   ++E+A+ N A          +     + +    + 
Sbjct: 315 CGMGTIGLSMAGQCRELIGVEIVPEAIESAKANAARMGEAVAAKSRFFCADAGQAATQLA 374

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332
            E                  + +DPPR G D+AT+  V   A   ++Y+SCNP +  RD 
Sbjct: 375 AE------------GLHPDIVMLDPPRKGCDEATLSAVVRMAPRRVVYVSCNPATAARDA 422

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           + L    +  E++   D FP T+H E      +
Sbjct: 423 AWLEQNGYHAEKVQPVDLFPRTKHCEVVSCYTK 455


>gi|266624563|ref|ZP_06117498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
 gi|288863579|gb|EFC95877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
           DSM 13479]
          Length = 463

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 154/396 (38%), Gaps = 59/396 (14%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP-NLQ-IFRSE-PIHYRMRAEFHIWHD--G 55
            G +     YE+QL  K  ++R ++ +       + I  S  P  YR + EF    +   
Sbjct: 86  GGCIYQTIPYEKQLEIKEKQVRSLLDSVCASYEFEGILASPQPCGYRNKMEFSFGDEFKD 145

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT---------------IRLEPLL 100
             +   M  + +   +          ++N+   E++                 ++    L
Sbjct: 146 GPMALGMHRRGSFYDVVTTT---DCQIVNSDFCEILKASKDYFEELGLGFYKKMQHTGYL 202

Query: 101 RAKLFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
           R  L +         +D +T+  ++  +     RLL         R+   LH     +  
Sbjct: 203 RHLLVRRAVKTGEILVDLVTTSQEEPDLMPFAERLLSLP---LNGRIVGILHTWNDSLSD 259

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
             + +KT I   +DY  E L      L +R    SF Q N+     + E   +     + 
Sbjct: 260 AVKNDKTDILYGQDYFYEELL----GLKFRISPFSFFQTNSLGAEVLYEKARSYVGDTKD 315

Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            ++ +LY G G  + ++A    +V+ VEI + +VEAA+ N   N + N + +        
Sbjct: 316 MVVFDLYSGTGTIAQMIAPVAKKVVGVEIVEEAVEAAKENAKMNGLENCEFIAGDV---- 371

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
                      LK ID    +   I +DPPR G+    +G +  Y    I+YISC P SL
Sbjct: 372 -----------LKVIDEIEEKPDLIILDPPRDGIHPKALGKIIDYGVNRIVYISCKPTSL 420

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
            RDL++     + +E++   D FP T ++E    + 
Sbjct: 421 VRDLAVFQERGYRVEKVCAVDMFPSTGNVEVCCRMS 456


>gi|149374703|ref|ZP_01892477.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola
           DG893]
 gi|149361406|gb|EDM49856.1| RNA methyltransferase, TrmA family protein [Marinobacter algicola
           DG893]
          Length = 429

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 144/375 (38%), Gaps = 30/375 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             +L     + Q+  K D LR+    F     +      RS  + YR +A   + +    
Sbjct: 70  GCSLQHMSGDAQIRFKEDTLREHFAHFGGIEPEEWVAPMRSPALGYRRKARLGVKYVPAR 129

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           + +     +++      ID  +     I   +  +   +      R ++ Q++       
Sbjct: 130 ESVLVGFREKRNSFLTDIDRCVVLDPRIGDRITPLRELLHDMDAYR-RIPQVEVACGDES 188

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA- 174
            A++     R +D         L     A +  I L  +   T   +  +  +ERL+   
Sbjct: 189 AAMI----FRNMDPLSDSDTQALIGFGQAHELHIYLQPKGPDTVHRIWPESGEERLSYGM 244

Query: 175 -GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               L  +     FTQ N  IN +M+   +       G+ +L+L+CG GNF+L LAR   
Sbjct: 245 EEFDLTMKFHPMDFTQVNVDINRNMVHRAVEWLDIQPGERVLDLFCGLGNFTLPLARRAG 304

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYR 291
           +V+ VE     V   R N   N ++NV         +FT                  +  
Sbjct: 305 QVVGVEGDDAMVVRGRENAELNGLSNVAFHGADLHADFTAQ-------------PWAAEG 351

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
           F  I +DPPRSG  +    +       I+Y+SCNP +L RD  ++    + + R  + D 
Sbjct: 352 FDKILIDPPRSGAQEVCEYLTAFGAKRIVYVSCNPATLARDAGVMVRNGYRLVRAGVMDM 411

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E   +  R
Sbjct: 412 FPHTTHVESMAMFER 426


>gi|329767656|ref|ZP_08259176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
           M341]
 gi|328839083|gb|EGF88669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
           M341]
          Length = 451

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 146/383 (38%), Gaps = 38/383 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQ------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    YE+QL  K   L      +  +P         +   +   YR + +F +      
Sbjct: 85  LAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVLKTLASPKVEGYRNKNQFPLAVRNGR 144

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           +   ++ + + + + I+  +        I  L  +++   ++E     K + + Y+ +++
Sbjct: 145 VIAGLYKEGSNDLVEINEDLALHENGNKITNLAKKLLGKYKVEISTNKKNYGVKYIATRT 204

Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG------RANKTKICLDR 164
                   VT + +        +    L+     +   + +           ++      
Sbjct: 205 SFYNGDVQVTFVANTNKIKNMDKVVNELKRERIVKSIILNITNDKDHLVMGTESLTLYGS 264

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ E++      + Y     SF Q N      + + V+      + D+ L+ +CG G  
Sbjct: 265 DYIVEKIG----EIKYELSAKSFFQLNPPATKKLYDKVVEFAALKETDVVLDAFCGVGTI 320

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
              ++R+   V  V+I   +++ A  N+  N++ N   V   + +     ++        
Sbjct: 321 GQYVSRNCKEVYGVDIIPAAIKDANDNVKLNNLTNCTYVAGDANKIVPRWKK-------- 372

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                   F    VDPPR GL      ++      I+Y+SCNP +L RDL +L+  + I 
Sbjct: 373 ----KGINFDVAIVDPPRVGLGPLAKNLLAVDAKKIVYVSCNPSTLARDLKVLTRKYRIR 428

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+   D FP T  +E  V L+RK
Sbjct: 429 RIQPVDMFPGTAAVEAVVELIRK 451


>gi|39996847|ref|NP_952798.1| RNA methyltransferase [Geobacter sulfurreducens PCA]
 gi|51316710|sp|Q74CC6|Y1748_GEOSL RecName: Full=Uncharacterized RNA methyltransferase GSU1748
 gi|39983735|gb|AAR35125.1| RNA methyltransferase, TrmA family [Geobacter sulfurreducens PCA]
 gi|307634915|gb|ADI84585.2| RNA methyltransferase, TrmA family [Geobacter sulfurreducens KN400]
          Length = 438

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 153/377 (40%), Gaps = 29/377 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56
             +    +Y+ Q   K       +  F                P  YR RA+F I   G 
Sbjct: 76  GCSWQHLRYDAQAEAKERIFVDTLWRFGRVERDAVAPFAVADNPFGYRCRAQFKIRWSGG 135

Query: 57  DLYHIMFDQQTKERMRID-YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            L+   + + +   +      +     IN L +  +  +  +     K+ QID  T +  
Sbjct: 136 RLHMGFYRRGSHYVIDAPAECVICDPAIN-LTLRDLRLVLPDFSEPDKIPQIDAATGEDG 194

Query: 116 QAIVTLIYHRLLDDAWR--ECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDER 170
              V L+ H + D+  R  +    ++  L +        GR +        D   Y    
Sbjct: 195 --HVLLVVHYIGDNPGRAADFFRSIQPHLASVTGIHLQCGRKDSIMHVWGVDSLSYTVPG 252

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR 229
           L   GR L        F+Q N   N  ++   L  A  G    +L+L+CGNGNFSL LA 
Sbjct: 253 LGDQGRPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGVGPGRRVLDLFCGNGNFSLPLAS 312

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +++ VE   PS++ AR N   N + +V+ + + + + T+ +R   E           
Sbjct: 313 GGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAAGE----------- 361

Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             F T+ +DPPR+G  DA     + A   I+Y+SC+P +L RDL +L    + +      
Sbjct: 362 -HFDTVILDPPRTGARDAVGEVAILAPERIVYVSCDPPTLGRDLGVLRKAGYRVVGSHGV 420

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP T H+E   LL+R
Sbjct: 421 DMFPQTYHIESVTLLIR 437


>gi|209920234|ref|YP_002294318.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli SE11]
 gi|209913493|dbj|BAG78567.1| putative RNA methyltransferase [Escherichia coli SE11]
          Length = 433

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 143/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +    ++R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPKLEALLPKVRACLGSLQVMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|269101852|ref|ZP_06154549.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161750|gb|EEZ40246.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 441

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 164/376 (43%), Gaps = 35/376 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56
              L    ++ Q+  K   L ++M  F   +  I +++P      HYR  A F I  D  
Sbjct: 90  GCNLQHLSHQGQVTAKQQSLTELMTKFAGADQAITQAKPIVGPDTHYRRCARFGIRLDNR 149

Query: 57  DLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                 F + Q+KE + +   M  +  +N L+  +   +      +  L  ++ +  ++D
Sbjct: 150 GQLQFGFRKKQSKEIVDVPQCMVLAQSLNELLPVLRELLNSLKGRKH-LGHVELV--EAD 206

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTVA 174
              V +I H  L         +L +   +++  + +   A+   +I  DR Y +    + 
Sbjct: 207 NGRVVMIRH--LQPFSDADMSKLLEFAKSQQIMLFMAPTADSIEQIFGDRPYYE----LD 260

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
            + L +      F Q N  +N+ M++  +        D +L+L+CG GNFSL LA+  + 
Sbjct: 261 CQKLYF--SPKDFIQVNRDVNIAMVKQAIDWLDVQADDRVLDLFCGLGNFSLPLAKRANT 318

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK-EFTQAMRREREFNRLKDIDIHSYRF 292
           ++ VE     V  A+ N   N +NN    + + + + T+    ++ FN+           
Sbjct: 319 LVGVEGVDEMVHRAQDNAQYNQINNAAFFQANLEQDVTEFSWAKKPFNK----------- 367

Query: 293 KTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQF 350
             I +DP R+G       +V+  P  ++Y+SCNP +L RD   +L   + + +L + D F
Sbjct: 368 --ILLDPARAGAAGVMEHVVKLAPEKVVYVSCNPATLARDSQILLHKGYQLTQLGMMDMF 425

Query: 351 PYTRHMECGVLLVRKP 366
           P+T H+E   L VR  
Sbjct: 426 PHTGHLESMALFVRSK 441


>gi|218555336|ref|YP_002388249.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli IAI1]
 gi|218696384|ref|YP_002404051.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 55989]
 gi|300815798|ref|ZP_07096022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           107-1]
 gi|218353116|emb|CAU98943.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli 55989]
 gi|218362104|emb|CAQ99713.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli IAI1]
 gi|300531727|gb|EFK52789.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           107-1]
 gi|323946492|gb|EGB42518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H120]
 gi|324016362|gb|EGB85581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           117-3]
          Length = 433

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 143/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +    ++R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPKLEALLPKVRACLGSLQVMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|260590015|ref|ZP_05855928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
           20583]
 gi|260539527|gb|EEX20096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
           20583]
          Length = 462

 Score =  244 bits (623), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 86/407 (21%), Positives = 150/407 (36%), Gaps = 66/407 (16%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAF----------QVPNLQI----FRSEPIHYRMR 46
            G +     YE+QL  K  ++++++               P+          +   YR +
Sbjct: 79  GGCMYQTMSYEEQLNMKAAQVKKLIDEAVIRGGQVDTEGKPDYIFEGIKGSPQEFAYRNK 138

Query: 47  AEFHIW------------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MM 91
            EF               H     Y ++     K  +  D     + ++     E     
Sbjct: 139 MEFSFGDKYKDGPLSLGLHKKGSTYDVLNACDCK-LVHEDMTKILTCILEYCREEGFSYY 197

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---------RDAL 142
             ++    LR  L +    T    + +V L+    ++  + E   RL            L
Sbjct: 198 HKMQHTGFLRHLLLRRGNTTG---EILVNLVTTSEIETDFAELQKRLLALPLEGKIVGFL 254

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
           H     +  + R+++T+I   +DY  E +      L ++    SF QPN+     + +  
Sbjct: 255 HIINNSLSDVVRSDETRILYGQDYFYEEIL----GLKFKITPFSFFQPNSYGAEVLYKTA 310

Query: 203 LAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                  +   + +LY G G  S ++A     V+ VEI + +V+AA  N   N + N + 
Sbjct: 311 REYIGDTKEMTVFDLYSGTGTISQIMASVAKEVIGVEIVEEAVKAAGENAHLNGIENCRF 370

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHIL 319
           +                   LK +D    +   I +DPPR G+    +  +       ++
Sbjct: 371 IAGDV---------------LKVLDDIQEKPDFIILDPPRDGIHPKALPKIIDYGVDKLV 415

Query: 320 YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           YISC P SL RDL   L   + +E++   DQF  T H+E   LL RK
Sbjct: 416 YISCKPTSLARDLEMFLGRGYQVEKVCCVDQFCQTVHVETVCLLQRK 462


>gi|74313357|ref|YP_311776.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sonnei Ss046]
 gi|91207813|sp|Q3YY71|RUMA_SHISS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|73856834|gb|AAZ89541.1| putative enzyme [Shigella sonnei Ss046]
 gi|323167875|gb|EFZ53566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella sonnei 53G]
          Length = 433

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 143/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++MA +    ++R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVMACLGSLQVMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|325478688|gb|EGC81799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 415

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 165/371 (44%), Gaps = 38/371 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
             T++   YE QL  K + ++  +       + +++I  SE + YR + +  +   G   
Sbjct: 76  GCTIMDTNYETQLKLKENLIKNALKKTCGINLEHIEILPSEKLGYRNKIKVQVDEKGRLA 135

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           Y+    + + + + ID  +  +  I   +  +      E + +    +I  ++ +SD   
Sbjct: 136 YN---KKSSNDLVAIDDCLLANNHIRENLPNIRK--LTEDITKNLGKKIREISIRSDGEE 190

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-CLDRDYVDERLTVAGRT 177
           + L  +   ++   +    L++    + Y I LI   N  KI  +  DY    L    + 
Sbjct: 191 ILLNIYTNDEE---KLYNYLKEEYPNQVYNINLI---NGRKIMTIGNDY----LNFKLKD 240

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
            I++  ++ F Q N     ++              LL+L+CG+G  S+ L  + D ++ +
Sbjct: 241 KIFKVSKDDFYQVNDYQIENLYASA-RKYLEKDKKLLDLFCGSGISSIAL--NDDHIVGI 297

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI K ++E A+ N  AN++ + K +  ++K   Q               I   + K + V
Sbjct: 298 EINKSAIEDAKQNALANNLKDYKFISKNAKYIDQKF-------------IKKEKIKAVTV 344

Query: 298 DPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTR 354
           DPPR+GLD   +  +      +I+YISCNP +L RD+   +   + +E++   D FP T 
Sbjct: 345 DPPRAGLDKEIIKTLTKTKIENIIYISCNPQTLARDIKRFMDRGYKLEKIKAVDMFPQTM 404

Query: 355 HMECGVLLVRK 365
           H+E  VL+ RK
Sbjct: 405 HVETVVLMSRK 415


>gi|295094140|emb|CBK83231.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus sp. ART55/1]
          Length = 550

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 153/399 (38%), Gaps = 58/399 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEP--IHYRMRAEFHI--- 51
             +     YE QL  K + ++ ++             Q   + P    YR + EF     
Sbjct: 80  GCSYQTLSYENQLKVKEELVKGLLDGVIDSAEHPYEWQGILASPVTKGYRNKMEFSFGDE 139

Query: 52  WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI-----------EMMATIRLEPLL 100
           + DG     +     T + +++D     +  +N ++                 ++   LL
Sbjct: 140 YKDGPLALGLHKKNSTYDIVQMDDCYIVNDDLNKIVKYTVEFCRAAGLPYYKKMQHTGLL 199

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----------RLRDALHARKYQI 149
           R  + +    ++ +   +V L+      DA    A            ++   LH     +
Sbjct: 200 RHLVIR---RSATNGDLLVNLVTSTQNLDALDLDAFVRGLLDLPLEGKIAGILHTENDSM 256

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                +++T +    +Y+ E +      L ++    SF Q N      + +   +     
Sbjct: 257 ADAVISDRTNLLYGTEYIYETVL----GLQFKISPFSFFQTNTKSAERLYDKARSYVGDT 312

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +  ++ +LY G G  + +LA    +V+ VEI + +VEAAR N   N ++N + +      
Sbjct: 313 KDAVIFDLYSGTGTIAQLLAPVAKKVIGVEIVEEAVEAARVNAELNGLDNCEFIAGDV-- 370

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326
                        LK ID    +   I +DPPR G++   +  +  Y    ++YISC P 
Sbjct: 371 -------------LKVIDEIEEKPDFIVLDPPRDGINPKALTKIINYGVNELVYISCKPT 417

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           SL RDL  L    + + +    DQFP T H+E  VLL +
Sbjct: 418 SLARDLVTLQENGYYVTKACAVDQFPGTVHVETVVLLSK 456


>gi|37681006|ref|NP_935615.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio vulnificus
           YJ016]
 gi|37199756|dbj|BAC95586.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016]
          Length = 440

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 144/374 (38%), Gaps = 36/374 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56
              +    Y+ QLA K   L Q+M  F     +I  S P       YR RA   +  D  
Sbjct: 92  GCDMQHMDYQAQLAYKQRTLLQLMKKFSGS--EILLSPPVTGLEKAYRRRARVSLMWD-K 148

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQS 114
               + F  + K+  +I+      +L+  L   +     +         L  ++ + + +
Sbjct: 149 KSRQLQFGFRRKQSKQIENVTQCPVLVAELECLLPELKAILSHFHHPEHLGHVELVAADN 208

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTV 173
              I       LLD    E   +LR      +  + L+  +++  +I  +  Y  E    
Sbjct: 209 GAVITLRHTGPLLD----EDVAKLRQCAEQHQATLYLMPASDQLERISGEAPYYQEI--- 261

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
                      N+F Q N  +N  M+   L        D +L+L+CG GNFSL +A    
Sbjct: 262 ---GFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSDRVLDLFCGLGNFSLPIASKAK 318

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V  VE     V+ A  N + N +NN +    + ++                    S +F
Sbjct: 319 SVTGVEGVDDMVQKAALNASLNQINNAQFFHANLEQ------------DFVGQPWASEKF 366

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350
             I +DP R+G       +       ++Y+SCNP +L RD  S+L   + + +L + D F
Sbjct: 367 DKILLDPARAGASGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLTKLGMLDMF 426

Query: 351 PYTRHMECGVLLVR 364
           PYT H+E   L  +
Sbjct: 427 PYTSHLESMALFEK 440


>gi|56963072|ref|YP_174799.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
 gi|56909311|dbj|BAD63838.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
          Length = 471

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 144/392 (36%), Gaps = 45/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    YE  L  K D +RQ  + +             I    P +YR +++      
Sbjct: 97  GCQLQHMNYEATLEGKKDIVRQAFVRYTNVPESTLPLKNTIGMDNPWYYRNKSQLQTRKQ 156

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRA 102
            D      ++ + + + + +   M     +N            L I +         +R 
Sbjct: 157 KDGRVAAGLYRENSHDLIDLSACMVQHKQLNRVAQIVKQLLGDLQIPIYNEKTHSGDIRT 216

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +I + T Q     +T        +       ++R+ L      +Q +    KT +  
Sbjct: 217 IVTRIGFETKQIQLVFITRTEALPKKEL---LIKQVREKLPEVTSVMQNVNH-EKTSLIF 272

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELY 217
                  Y ++ +        +     +F Q N    V +  E   AA    +  L++ Y
Sbjct: 273 GEKMVHLYGEKTIHERLGEYSFDLSARAFFQLNPSQTVKLYNEAKKAAHLTGKEKLVDAY 332

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G     L    + V  ++I + ++E AR N   + +  V      ++++     +  
Sbjct: 333 CGVGTIGQWLGDQAEEVRGMDITEEAIENARSNAKKHGIAAV-YEVGPAEKWLPLWLK-- 389

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL 335
                       ++   I VDPPRSG D   +  M++A P  I+Y+SCNP +L +D+  L
Sbjct: 390 ----------QGFKPDVILVDPPRSGCDRQLLKSMLKAKPKRIVYVSCNPSTLAKDVQHL 439

Query: 336 --STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +  + I+ +   D FP+T  +E    L+ K
Sbjct: 440 IEAGGYAIQSIQPVDMFPWTAQVESVTELILK 471


>gi|254230529|ref|ZP_04923900.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio sp. Ex25]
 gi|262393276|ref|YP_003285130.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. Ex25]
 gi|151936954|gb|EDN55841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio sp. Ex25]
 gi|262336870|gb|ACY50665.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. Ex25]
          Length = 439

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 154/371 (41%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD-- 56
              L    Y+QQL  K   LRQ+M  F   ++++      + + YR RA   ++ D    
Sbjct: 90  GCDLQHLDYDQQLTYKQQTLRQLMRKFSGNDIELDAPLLGDSLAYRRRARVSLFVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +N L+ E+ + ++       +L  ++ +   +  
Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSALKAFKK-PEQLGHVELVLGDNGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I TL +   L          L    HA    + L+   ++  +        + + V   
Sbjct: 209 CI-TLRHLSALTTVETNALTELAKRHHA---SLYLMPATDQLNLVEGDMPFYQEVGVKIP 264

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
                   N+F Q N  +N  M++  +      + D +L+L+CG GNFSL +A+    V+
Sbjct: 265 -----FAPNNFIQVNQAVNKKMVKQAVEWLDPQKSDRVLDLFCGVGNFSLPIAKLAKHVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     VE A  N + N +NN +    + ++              +     + RF  +
Sbjct: 320 GVEGVAEMVEKATNNASLNQINNAQFYHANLEQ------------DFEGQVWAAERFDKV 367

Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
            +DP R+G       + +     ++Y+SCNP +L RD   L    + + +L + D FP+T
Sbjct: 368 LLDPARAGASGIIDQVSELGAQRVVYVSCNPATLARDSQSLMEQGYKLTKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 428 SHLESMALFEK 438


>gi|288928551|ref|ZP_06422398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288331385|gb|EFC69969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 479

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 147/398 (36%), Gaps = 57/398 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSE--PIHYRMRAEFHIWHDG-------- 55
            YE+QL  K  ++   +      Q+P           +HYR + EF   +          
Sbjct: 97  PYEEQLRAKQQQVYDQLSRISHVQLPTFHPIMGSQLTLHYRNKLEFGCSNKRWLTREQVA 156

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LR--- 101
             + +  M            + + I+       L N +  E+        +    LR   
Sbjct: 157 SGETFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEIRDYALAHNITFFDLRQQT 216

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-- 159
             L  +    S + + +V + +H    D  ++ A  L   +  R  QI  +   +  K  
Sbjct: 217 GLLRDVMIRNSDTGEWMVLVQFHFETADD-QQTADALLAHVAERFPQITSLLWVDNQKCN 275

Query: 160 ---------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +    D++ E +      L ++    SF Q N     H+ E          
Sbjct: 276 DTFGDLPVYVFKGNDHIFEVM----EDLRFKVGPKSFYQTNTQQAYHLYEVARRFANLSG 331

Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +++ +LY G G  +  +AR   +V+ VE    ++  A+ N   N + N        K+ 
Sbjct: 332 TEIVYDLYTGTGTIANFVARQAKKVVGVEYVPEAIADAKVNSELNGIGNTTFYAGDMKDI 391

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDS 327
                         D   ++ +   I  DPPR+G+    +  +++A P  I+Y+SCNP +
Sbjct: 392 LND-----------DFIANNGQPDVIITDPPRAGMHADVIETIIRANPQRIVYVSCNPAT 440

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL  L   + +  +   D FP+T H+E  VLL R+
Sbjct: 441 QARDLIALDERYAVTAVQPVDMFPHTPHVENVVLLERR 478


>gi|78187968|ref|YP_376011.1| 23S rRNA methyltransferase [Chlorobium luteolum DSM 273]
 gi|78167870|gb|ABB24968.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium luteolum DSM 273]
          Length = 476

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/404 (21%), Positives = 146/404 (36%), Gaps = 55/404 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPI--HYRMRAEFHI----- 51
              L+   YE QL  K  ++R  +     F+ P L      P   HYR + EF       
Sbjct: 86  GCKLMHVSYEAQLRYKEKKVRDALAHLGGFEDPPLTPAHPAPSSVHYRNKIEFSCSSKRY 145

Query: 52  ---------WHDGDDLYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL- 99
                           + + F       + + ID     +  +N ++        L  L 
Sbjct: 146 LLHEEIAADRLQAPKNFALGFHAPGNFEKVIDIDRCFLATDGMNRVLNLTREFALLNTLA 205

Query: 100 ----------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD-----ALHA 144
                     LR  + +      +    IVT  Y R L + +R       +      ++ 
Sbjct: 206 AYGAKEHTGFLRNLVVRYSEEREELMVNIVTSWYDRDLMERYRLHLESGMEGVRMTIVNN 265

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL- 203
              +   +       I      + ERL      L +R   NSF Q N      +   +L 
Sbjct: 266 VTSRPNTVAVGEHEYIVSGSGVITERLG----ELDFRISANSFFQTNTRQAEALYACILR 321

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           AA    +  + +LYCG G  +L +ARH    + +E+ + S++ AR N   N + N    +
Sbjct: 322 AAGLKAEDTVYDLYCGTGTITLFMARHCRMAVGLEVVESSIQDARANAEFNSIRNAVFFQ 381

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
              K+F   +     + R             +  DPPR+G+    +  +       I+Y+
Sbjct: 382 ADLKDFGTLLPTLDSYGR----------PDVVVTDPPRAGMHPKALQAMVQLEARRIIYV 431

Query: 322 SCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP SL RD   + +  + +E +   D FP+T H+E     VR
Sbjct: 432 SCNPASLGRDGKEIAAAGYRLESVEPVDMFPHTAHIESVACFVR 475


>gi|323693629|ref|ZP_08107829.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
 gi|323502320|gb|EGB18182.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
          Length = 461

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/394 (21%), Positives = 155/394 (39%), Gaps = 52/394 (13%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIH--YRMRAEFHIWHD--- 54
            G L     YE QL  K +++++++         +  +  P+   YR + EF    +   
Sbjct: 79  GGCLYQTIPYETQLEIKKEQVKELLDGVCEEYEFEGIKGSPLADCYRNKMEFSFGDEVKD 138

Query: 55  -----GDDLYHIMFDQQTKERMRIDYFMPGSLLIN------ALMIEMMATIRLEPLLRAK 103
                G       +D  T    RI +     +L+          +     ++    LR  
Sbjct: 139 GPLALGMHKRGSFYDVVTTGECRIVHKDFCDILLCTKAYFEEKEVGFYKKMQHTGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIY-----HRLLDDAWRECAIRL------RDALHARKYQIQLI 152
           L +    T +    ++T         + L   W E  + L         LH +   +   
Sbjct: 199 LVRRAVKTGEILLDLITTTQIGVEEEKELLAGWLERLLALPLEGKMAGILHTKNDSLADA 258

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
            +   T++   +DY  E L      L +R    SF Q N+     + E         +G 
Sbjct: 259 VKDEGTEVLYGKDYFFEELL----GLKFRISPFSFFQTNSLGAEVLYEKTREYVGETKGK 314

Query: 213 LL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++ +LY G G  + +LA   ++V+ VEI K +VEAA+ N   N ++N + +         
Sbjct: 315 VVFDLYSGTGTIAQILAPVAEKVVGVEIVKEAVEAAKENARLNGLDNCEFIAGDV----- 369

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
                     LK +D  + + + I +DPPR G+    +  +  +    ++Y+SC P SL 
Sbjct: 370 ----------LKVVDELTDKPELIVLDPPRDGIHPKAIEKIIGFGVERMVYVSCKPTSLA 419

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
           RDL IL    + +E+    D FP T ++E  +++
Sbjct: 420 RDLVILQENGYRVEKGCCVDMFPGTANVEVVIMM 453


>gi|212693125|ref|ZP_03301253.1| hypothetical protein BACDOR_02632 [Bacteroides dorei DSM 17855]
 gi|212664230|gb|EEB24802.1| hypothetical protein BACDOR_02632 [Bacteroides dorei DSM 17855]
          Length = 473

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 155/404 (38%), Gaps = 62/404 (15%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50
            L    Y +Q+  K  ++   +      ++P +           YR + EF         
Sbjct: 89  CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNKRWLT 145

Query: 51  -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
                  + +D  +           + + ID       + N +   +             
Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205

Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-----L 151
           LR++   L  +   TS + + +V L+  +++++   +   RL   +  R  QI      +
Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEEGELDLMKRLLTFVAERFPQITSLLYVV 264

Query: 152 IGRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
             + N T       +    D++ E +      L ++    SF Q N+G   + L  V   
Sbjct: 265 NNKCNDTINDLDVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             G+ G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N A N ++N     
Sbjct: 320 FAGLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
              K+              ++      R   I  DPPR+G+ D  +  +       I+Y+
Sbjct: 380 GDMKDILT-----------QEFISQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP +  RDLS+L   + +  +   D FP+T H+E  VLL ++
Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|258622336|ref|ZP_05717361.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM573]
 gi|258585352|gb|EEW10076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM573]
          Length = 440

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRTGQINHKQQALSQLMVKFAGQSLALSVPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + + +       +NAL+ E+ A +  +      L  ++ +   + Q
Sbjct: 150 QLQFGFRRKQSKAIVSVTHCPVLEPSLNALLPELNALLS-QWSQPELLGHVELVKGDNTQ 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +    L D    +   + L   A + +       Y +E      
Sbjct: 209 VLVL----RHLGVLAEQDQQSLSDFATQKGLTLYLTLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + N F Q N  +N  M+E  L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQDV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE  +  V+ A +N   N +NNV   + + ++             + +      +F  
Sbjct: 319 VGVEGVEEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTNASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|293416032|ref|ZP_06658672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B185]
 gi|291432221|gb|EFF05203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B185]
          Length = 433

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 141/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + E + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSEIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|89896511|ref|YP_519998.1| hypothetical protein DSY3765 [Desulfitobacterium hafniense Y51]
 gi|89335959|dbj|BAE85554.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 446

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 143/374 (38%), Gaps = 40/374 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y Q L  K   +   +       L+       +   EP  YR +A     H 
Sbjct: 94  GCQLQHLNYAQTLLWKKRWVEDALTRIGKIPLEKVKVHPTLGMDEPWRYRNKARL---HR 150

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT-SQ 113
           G+      + +++K  +     +  S  +N  + E  A +  +   +     ++ LT  +
Sbjct: 151 GEGNTLGYYQEKSKATVPFTDCLLISESMNRWVREAEAILGQQD--KNLFPDLNALTFRE 208

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           + Q    LI   L D    +    +   +H+      +       +I   +++ ++ L  
Sbjct: 209 NSQGEGMLILDSLKDVRQADVWSEMGGGIHSV---WGINSSGEPERIAGQKEFTEDVLGA 265

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD 232
                 ++    +F Q N      +   VL   +     +  +LYCG G  +L LA    
Sbjct: 266 -----RFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEKVVWDLYCGIGTITLALAAKAK 320

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V  +E    +VE AR N   N VNNV+ +   +++  Q +                   
Sbjct: 321 KVWGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQQI---------------GDSP 365

Query: 293 KTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
             + +DPPR+G     +  +++  P  I+Y+SC+  +L RDL IL    + +  +   D 
Sbjct: 366 HIVVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDM 425

Query: 350 FPYTRHMECGVLLV 363
           FP+T  +E  +++ 
Sbjct: 426 FPWTVSVESVIMMT 439


>gi|50401486|sp|Q7MHP7|RUMA_VIBVY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 438

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 144/374 (38%), Gaps = 36/374 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56
              +    Y+ QLA K   L Q+M  F     +I  S P       YR RA   +  D  
Sbjct: 90  GCDMQHMDYQAQLAYKQRTLLQLMKKFSGS--EILLSPPVTGLEKAYRRRARVSLMWD-K 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQS 114
               + F  + K+  +I+      +L+  L   +     +         L  ++ + + +
Sbjct: 147 KSRQLQFGFRRKQSKQIENVTQCPVLVAELECLLPELKAILSHFHHPEHLGHVELVAADN 206

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTV 173
              I       LLD    E   +LR      +  + L+  +++  +I  +  Y  E    
Sbjct: 207 GAVITLRHTGPLLD----EDVAKLRQCAEQHQATLYLMPASDQLERISGEAPYYQEI--- 259

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
                      N+F Q N  +N  M+   L        D +L+L+CG GNFSL +A    
Sbjct: 260 ---GFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSDRVLDLFCGLGNFSLPIASKAK 316

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V  VE     V+ A  N + N +NN +    + ++                    S +F
Sbjct: 317 SVTGVEGVDDMVQKAALNASLNQINNAQFFHANLEQ------------DFVGQPWASEKF 364

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350
             I +DP R+G       +       ++Y+SCNP +L RD  S+L   + + +L + D F
Sbjct: 365 DKILLDPARAGASGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLTKLGMLDMF 424

Query: 351 PYTRHMECGVLLVR 364
           PYT H+E   L  +
Sbjct: 425 PYTSHLESMALFEK 438


>gi|281492836|ref|YP_003354816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis
           subsp. lactis KF147]
 gi|281376488|gb|ADA65974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactococcus lactis
           subsp. lactis KF147]
          Length = 513

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 139/405 (34%), Gaps = 55/405 (13%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWH-DGD 56
           ++   Y  QL  K D +RQ +  ++            +     + YR + +F +   +  
Sbjct: 85  IMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQ 106
            +   ++ + T   + +D  +        ++  +   I    L          +R  + +
Sbjct: 145 TVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIRTVMVR 204

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------------RLRDALHARKYQ 148
               T +     VT     L    W E                      L +        
Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFEEIVTV 264

Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVL 203
                    ++I  +R  +     E +T       +     +F Q N+     +  E V 
Sbjct: 265 AVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A        +++ YCG G     +A+    V  ++I   S+  AR N     + N     
Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321
             ++       +              +R   + VDPPR+GLDDA +  +  +P   ++Y+
Sbjct: 385 GKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYV 432

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           SCN  +L +DL +L+  + +E +   D FP+T   E  V L ++ 
Sbjct: 433 SCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKRD 477


>gi|327481361|gb|AEA84671.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas stutzeri
           DSM 4166]
          Length = 450

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 138/372 (37%), Gaps = 30/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI-WHDGD 56
             TL     + QLA K   L + +        +            YR RA   + WH  D
Sbjct: 99  GCTLQHAAIDDQLALKQRTLGEQLARLAELKPERWAEPLTGPAFGYRRRARLAVRWHTRD 158

Query: 57  DLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
               + F    +++ + ID        +  L+  ++  +         +  ++  +  ++
Sbjct: 159 KRLEVGFRSTASQDIVAIDQCPVLVQPLQTLLPGLLEALHGL-TKPQAIGHVELFSGTAE 217

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             ++     R           RLR    A + Q+ L G          +  +  RL    
Sbjct: 218 AVLI-----RHTAPLPEIDLARLRTFTRAHQAQLWLQGEGEPQADVPGQ-ALGYRLEAWD 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   L+      G+ +L+L+CG GNFSL L R   +V
Sbjct: 272 LELAWR--PGDFVQVNAPVNEAMVAQALSWLGASAGERVLDLFCGLGNFSLPLGRQGAQV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE  +  V  A+ N   N +  V   R    +             L D       F  
Sbjct: 330 VGVEGVEAMVARAQDNAQRNGLEQVHFYRADLSK------------PLADAPWARSGFDA 377

Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    M Q     ++Y+SCNP +L RD   L S    ++R  L D FP 
Sbjct: 378 VLLDPPRDGALEIVRQMTQLQARRVVYVSCNPATLARDARELASQGFRLKRAGLLDMFPQ 437

Query: 353 TRHMECGVLLVR 364
           T H E   L  R
Sbjct: 438 TAHAEAMALFER 449


>gi|239625789|ref|ZP_04668820.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA]
 gi|239520019|gb|EEQ59885.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA]
          Length = 462

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 154/401 (38%), Gaps = 59/401 (14%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPI--HYRMRAEFHIWHDG 55
            G +     YE QL  K  +++ ++     P+   F      P+   YR + EF    + 
Sbjct: 79  GGCIYQSLPYEAQLKIKEGQVKSLLDGVVEPDSYEFMGIKASPLEKGYRNKMEFSFGDEV 138

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT---------------IRLEPLL 100
            D    +   +      I    P   +++     ++                 ++ +  L
Sbjct: 139 KDGPLALGMHRRGSFYDI-VTTPDCQIVHPDFCRILVATKEYFEELGTAFYKKLQHKGYL 197

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLL---DDA-----WRECAIRL------RDALHARK 146
           R  L +    T +    +VT      L   D+A     W+E  + L         LH   
Sbjct: 198 RHLLVRRAVKTGEILVDLVTSTQREYLGGRDEAAVLSGWKERLLALPVDGRFAGILHTEN 257

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
             +  + +++ T +   +D+  E L      L +R    SF Q N+     + +      
Sbjct: 258 DSLADVVQSDATHVLYGQDFFYEELL----GLRFRISPFSFFQTNSMGAEVLYDTARGFV 313

Query: 207 KGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              +  ++ +LY G G  + +LA    +V+ VEI + +VEAA+ N   N ++N + V   
Sbjct: 314 GETKDKVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKVNAGLNGLDNCEFVAGD 373

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
                           LK ID    +   I VDPPR G+    +G +       I+YISC
Sbjct: 374 V---------------LKVIDDLEDKPDLIVVDPPRDGIHPKALGKIIEFGVDRIVYISC 418

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
            P SL RDL +L    + +E++   D FP T ++E   L+ 
Sbjct: 419 KPTSLVRDLVVLQERGYRVEKVCAMDMFPGTGNVEVVTLMS 459


>gi|256820983|ref|YP_003142262.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM
           7271]
 gi|256582566|gb|ACU93701.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM
           7271]
          Length = 471

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 136/400 (34%), Gaps = 49/400 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHI----W 52
                   Y+ QL  K   +   ++             I   E  +YR + EF      W
Sbjct: 83  GCKWQDMNYQSQLFYKQKEVENNLVRLGRIEIPAVMPIIGSDETYYYRNKMEFSFSDMRW 142

Query: 53  HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
              D++                     + + ID     +   NA+ +E+        +  
Sbjct: 143 LTPDEIKKADEIDNRNALGFHIAGAWDKILDIDKCYLQADPSNAIRLEVKRFALANEMPF 202

Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  +    S   Q +V + + R  +D      +            +Q    
Sbjct: 203 YSPRQQTGLLRTMMIRISSIGQIMVVIQFFR--NDPKITLLLDHIAETFPMITSLQYCIN 260

Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
           +       D++ +     + +      L ++    SF Q N+      L  V      ++
Sbjct: 261 SKGNDAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSAQAYK-LYQVARNFADLK 319

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           GD  + +LY G G  +  +A+   +V+ VE    ++  A+ N  AN + NV       K 
Sbjct: 320 GDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKDNAFANGIENVTFYVGDMKN 379

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
                  E            +     I  DPPR G+    V  +   A   I+Y+SCN  
Sbjct: 380 IFNDTFIE-----------ENGTPDVIITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSA 428

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +  RDLS+L  T+ + ++   D FP T H+E  VLL ++ 
Sbjct: 429 TQARDLSLLDVTYKVTKVQPVDMFPQTYHVENVVLLEKRN 468


>gi|225027843|ref|ZP_03717035.1| hypothetical protein EUBHAL_02103 [Eubacterium hallii DSM 3353]
 gi|224954790|gb|EEG35999.1| hypothetical protein EUBHAL_02103 [Eubacterium hallii DSM 3353]
          Length = 560

 Score =  243 bits (621), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 156/390 (40%), Gaps = 47/390 (12%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEP--IHYRMRAEFHIWHDGDD 57
            G    +  YEQQL  K  ++ +++    +  +++     P    YR + EF    +  D
Sbjct: 96  GGCRYQNLSYEQQLDLKKRQVEELIEKNGLSFDIENIYGSPITEGYRNKMEFTFGDEEKD 155

Query: 58  LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMM-----------ATIRLEPLLRAK 103
               +   +      I   D         N L+  ++             IR E  LR  
Sbjct: 156 GPLALGMHKKNSFYDIVTLDDCRIVDPDFNVLLQAILKYFKEKGETYFHKIRHEGFLRHL 215

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAW------RECAIRLRDALHARKYQIQLIGRANK 157
           + +    T      +VT    RL +  +      ++   ++   LH     +  + ++++
Sbjct: 216 VMRRSVKTGDILINLVTTTQSRLDESEFVNMILSQKIDGKVVGILHTLNDNLADVVQSDE 275

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
           TK    +DY  E L      + ++    SF Q N      + + V       +  L+ +L
Sbjct: 276 TKTLYGQDYFYEYLY----NMRFKISPFSFFQTNTLGAEVLYDKVREYVGETKDKLIYDL 331

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  + +LA    +V+ VEI + +VEAA+ N   NH++N + +              
Sbjct: 332 YTGTGTIAQMLASVASKVVGVEIVEEAVEAAKKNAVDNHLDNCEFIAGDV---------- 381

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                LK +D  + +   + +DPPR G+    +  +  +    ++Y+SC P SL RDL +
Sbjct: 382 -----LKVVDNLTKKPDILVLDPPRDGIHPKALTKIINFNVDEMVYVSCKPTSLMRDLLV 436

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLV 363
                + ++R  L D FP T H+E  VLL 
Sbjct: 437 FREAGYEVKRACLVDMFPGTVHVETVVLLS 466


>gi|116513129|ref|YP_812036.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116108783|gb|ABJ73923.1| 23S rRNA m(5)U-1939 methyltransferase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 513

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 139/405 (34%), Gaps = 55/405 (13%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWH-DGD 56
           ++   Y  QL  K D +RQ +  ++            +     + YR + +F +   +  
Sbjct: 85  IMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQ 106
            +   ++ + T   + +D  +        ++  +   I    L          +R  + +
Sbjct: 145 TVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIRTVMVR 204

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------------RLRDALHARKYQ 148
               T +     VT     L    W E                      L +        
Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEASKRQKNSFVKFDKMLSALTEEFEEIVTV 264

Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVL 203
                    ++I  +R  V     E +T       +     +F Q N+     +  E V 
Sbjct: 265 AVNFHPRKTSEIYGERTQVLFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A        +++ YCG G     +A+    V  ++I   S+  AR N     + N     
Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321
             ++       +              +R   + VDPPR+GLDDA +  +  +P   ++Y+
Sbjct: 385 GKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYV 432

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           SCN  +L +DL +L+  + +E +   D FP+T   E  V L ++ 
Sbjct: 433 SCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKRD 477


>gi|150007675|ref|YP_001302418.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|255013620|ref|ZP_05285746.1| RNA methyltransferase [Bacteroides sp. 2_1_7]
 gi|262381816|ref|ZP_06074954.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_33B]
 gi|298375621|ref|ZP_06985578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_19]
 gi|301310290|ref|ZP_07216229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3]
 gi|149936099|gb|ABR42796.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503]
 gi|262296993|gb|EEY84923.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_33B]
 gi|298268121|gb|EFI09777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_19]
 gi|300831864|gb|EFK62495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3]
          Length = 470

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 80/406 (19%), Positives = 148/406 (36%), Gaps = 61/406 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIH-YRMRAEFHIWHDG- 55
                   YE+QL  K  ++   +       ++    I  SE    YR + EF   +   
Sbjct: 84  GCKWQHLPYEEQLYYKQKQVYDNLTRIGKVEMEEKLPILGSERTTFYRNKLEFTFSNKKW 143

Query: 56  --------DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATI------- 94
                      +  M            + + I        + N + + +           
Sbjct: 144 LTEEEIQSGASFDCMNGVGFHIPGMFDKVLDIHKCWLQDDISNKIRLCVKEYCLSHEGYP 203

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR------LLDDAWRECAIRLRDALH 143
                  E  +R  + +     S  D  +V + +H        L     E    +   ++
Sbjct: 204 FFDLRNQEGFVRTLMIRT---ASTGDLMVVLVFFHEDVERREALLSHLAERFPEITSLMY 260

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
               +        +  +   +D++ E +      L ++    SF Q N+    + L  V 
Sbjct: 261 VINGKCNDTITDQEVLVFKGKDHIIEEM----EGLQFKVGPKSFYQTNSEQAYN-LYKVA 315

Query: 204 AATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
               G+ G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N A NH+ N   
Sbjct: 316 REFAGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNHIENTLF 375

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319
                K+              +D      R   I  DPPR+G+ D  +  +       I+
Sbjct: 376 YAGDMKDILT-----------QDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIV 424

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           Y+SCNP +  RDLS+LS  ++++++   D FP+T H+E  VLL +K
Sbjct: 425 YVSCNPATQARDLSLLSVKYSVKKVRPVDMFPHTHHVENVVLLEKK 470


>gi|256839936|ref|ZP_05545445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
           D13]
 gi|256738866|gb|EEU52191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
           D13]
          Length = 470

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 148/403 (36%), Gaps = 55/403 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIH-YRMRAEFHIWHDG- 55
                   YE+QL  K  ++   +       ++    I  SE    YR + EF   +   
Sbjct: 84  GCKWQHLPYEEQLYYKQKQVYDNLTRIGKVEMEEKLPILGSERTTFYRNKLEFTFSNKKW 143

Query: 56  --------DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
                      +  M            + + I        + N + + +           
Sbjct: 144 LTEEEIQSGASFDCMNGVGFHIPGMFDKVLDIHKCWLQDDISNKIRLCVKEYCLSHERYP 203

Query: 100 ---LRAKLFQIDYL----TSQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARK 146
              LR +   +  L     S  D  +V + +H        L     E    +   ++   
Sbjct: 204 FFDLRNQEGFVRTLMIRTASTGDLMVVLVFFHEDVERREALLSHLAERFPEITSLMYVIN 263

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
            +        +  +   +D++ E +      L ++    SF Q N+    + L  V    
Sbjct: 264 GKCNDTITDQEVLVFKGKDHIIEEM----EGLQFKVGPKSFYQTNSEQAYN-LYKVAREF 318

Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            G+ G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N A NH+ N      
Sbjct: 319 AGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNHIENTLFYAG 378

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYIS 322
             K+              +D      R   I  DPPR+G+ D  +  +       I+Y+S
Sbjct: 379 DMKDILT-----------QDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIVYVS 427

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CNP +  RDLS+LS  ++++++   D FP+T H+E  VLL +K
Sbjct: 428 CNPATQARDLSLLSVKYSVKKVRPVDMFPHTHHVENVVLLEKK 470


>gi|170765935|ref|ZP_02900746.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii
           TW07627]
 gi|170125081|gb|EDS94012.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia albertii
           TW07627]
          Length = 433

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 145/368 (39%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
                    E Q   K   L ++M    V +  +    P  YR RA   + +       +
Sbjct: 89  GCQQQHASVELQQRSKSAALARLM-KHDVSD--VIADTPWGYRRRARLSLNYLPKTQQLL 145

Query: 62  MFDQ--QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           M  +   T + + I         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKSGTSDIVDIKQCPILVPQLEALLPKVRACLMSLQAIRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L+ A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLNSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDANGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L        D +L+L+CG GNF+L +A     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVAQALEWLDVQPDDRVLDLFCGMGNFTLPVATRAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N ++NV     + ++             +         F  + +D
Sbjct: 316 GVPALVEKGQENARLNGLHNVTFYHENLED------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|313887799|ref|ZP_07821479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846142|gb|EFR33523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 443

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 148/387 (38%), Gaps = 46/387 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIH--YRMRAEFHI---WHDG 55
             +     YE++L  K + +  +     +   ++I  S P+H  YR + E+     +  G
Sbjct: 73  GCSYQTLSYEEELKYKKELIENLFKENGIEREMEIIPS-PVHKNYRNKMEYTFGDEYKGG 131

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104
                +    +  E +            N +  E+                 E  LR  L
Sbjct: 132 PLSLGLHVKNRFHEIINTTDCKIVDEDFNTIRAEVRTYFEDLGEAQYNRKRHEGFLRHLL 191

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANKT 158
            +    T +    + T    +L ++A+ +  +      ++    H +   +       + 
Sbjct: 192 IRKATKTGEIMILLSTSSQSQLDEEAFIKFLLGLDLKGQIVSIYHVKNDALSDAIVPEEI 251

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
           K+   +D+++E +      L ++    SF Q N      + +            + +LY 
Sbjct: 252 KLIYGKDHIEEEVL----GLRFKISPFSFFQTNTKSAEVLYKMAREKIDAKDKLVFDLYS 307

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  + VLA    +V+ VEI + +VEAAR N   N ++NV+ +                
Sbjct: 308 GTGTITQVLAESAKKVIGVEIVEEAVEAARENAKLNGIDNVEFIASDV------------ 355

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS 336
              LK +D        I +DPPR G++   +  +  +     LYISCNP +L RDL +  
Sbjct: 356 ---LKVLDDLDKNPDLIVLDPPREGINPKAIDKIIDFDPEKFLYISCNPVTLVRDLGVFK 412

Query: 337 T-THTIERLALFDQFPYTRHMECGVLL 362
              + IE L + DQFP T H E   LL
Sbjct: 413 ERGYEIEELEIVDQFPKTSHAEVITLL 439


>gi|193065133|ref|ZP_03046207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22]
 gi|194426363|ref|ZP_03058918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171]
 gi|260845431|ref|YP_003223209.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|260856895|ref|YP_003230786.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|192927264|gb|EDV81884.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E22]
 gi|194415671|gb|EDX31938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B171]
 gi|257755544|dbj|BAI27046.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O26:H11
           str. 11368]
 gi|257760578|dbj|BAI32075.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O103:H2
           str. 12009]
 gi|323154829|gb|EFZ41022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           EPECa14]
 gi|323159900|gb|EFZ45870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E128010]
          Length = 433

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 143/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +    ++R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQVMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA+    V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|302386126|ref|YP_003821948.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
 gi|302196754|gb|ADL04325.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
           WM1]
          Length = 453

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 152/392 (38%), Gaps = 47/392 (11%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIH--YRMRAEFHIW--HDG 55
            G +     Y++QL  K  +++ ++         +     P    YR + EF     +  
Sbjct: 79  GGCVYQTIPYKEQLKIKEQQVKALLDGVCEDYEFEGILPSPAEAEYRNKMEFSFGDEYKE 138

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAK 103
             L   M  + +  + +        +     ++  +              ++    LR  
Sbjct: 139 GPLALGMHKRGSFYDVVTTTECRIVNPDFCNILKAVKDYFENLGTGFYKKMQHTGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAI--RLRDALHARKYQIQLIGRANK 157
           L +    T +   A+VT        +   +   E  +  R+   LH     +  + ++++
Sbjct: 199 LVRRAVKTGEIMVALVTTTQEDVDLKPFTEMLLELPLNGRIVGILHIFNDSLADVVKSDR 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
           T I   +DY  E L      + ++    SF Q N+     + E V       +  ++ +L
Sbjct: 259 TDILYGQDYFYEELL----GMKFKISPFSFFQTNSLGAEVLYETVRRYVGETKDKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  + ++A    +V+ VEI K +V+AA+ N   N + N + +              
Sbjct: 315 YSGTGTIAQMIAPVAKKVVGVEIVKEAVDAAKENTRLNGLENCEFIDGDV---------- 364

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
                LK ID    +   I +DPPR G+    +G +       ++Y+SC P SL RDL +
Sbjct: 365 -----LKVIDELPDKPDLIILDPPRDGIHPKALGKIIDFGVDRLVYVSCKPTSLARDLVV 419

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           L    + +E+    D FP T ++E  ++L RK
Sbjct: 420 LQERGYKVEKACCVDMFPSTANVETIMMLERK 451


>gi|143811454|sp|Q5E320|RUMA_VIBF1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 438

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 155/369 (42%), Gaps = 26/369 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58
              L   Q+E+Q+  K ++L+++M    V     +Q    E + YR RA   +       
Sbjct: 90  GCNLQHLQHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLML-NKQT 148

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
             + F  + K+   I       +L+  L   + +   L   L+ K         Q+D   
Sbjct: 149 NQLDFGFRKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKHLGHVELVQADNGS 208

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V LI H  + D   +    L +    R   + L+  A+     L+    +E   +   T 
Sbjct: 209 VLLIRH--VADFNEKDQQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTK 262

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
           IY      F Q N  +N  M+E  L+     + D +L+L+CG GNFSL LA+    V+ +
Sbjct: 263 IY-FTPKDFIQVNRNVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGI 321

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E     V+ A+ N   N ++NV   + + +E             + +    S +F  I +
Sbjct: 322 EGVDEMVQRAKLNAERNQLSNVSFYQANLEE------------EVSEQVWASTKFTKILL 369

Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           DP R+G       + +  P  ++Y+SCNP +L RD  +L      + RL + D FP+T H
Sbjct: 370 DPARAGAAGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGH 429

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 430 LESMALFER 438


>gi|288800143|ref|ZP_06405602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333391|gb|EFC71870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 473

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 146/405 (36%), Gaps = 57/405 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWH--- 53
                I  YE QL  K  ++   +       L  F       + + YR + EF   +   
Sbjct: 84  GCKWQILPYEDQLKAKHQQVYDQLSRIGKIELPEFNYILGSVQTMQYRNKLEFGCSNKRW 143

Query: 54  ------DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
                 D    +  M            +   I        L N +   +      + +  
Sbjct: 144 LTQEDIDSKKTFDNMNAIGFHITGAFDKIYPITQCQLMDDLQNQIRNHIYEYAIKQNISF 203

Query: 100 ----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
                +  L +   + + ++   + L+  R      +E A+ L + L     QI  +   
Sbjct: 204 YDLRNQHGLLRSIMVRNSNNNEWMVLVQFRFDQSNDKEKALALLEDLSNHFPQITSLLYV 263

Query: 156 NKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
           +  K           +    +Y+ E +      L ++    SF Q N     H+ + V  
Sbjct: 264 DNQKCNDTFSDLTVEVYKGNNYIYELM----EDLKFKVGPKSFYQTNTEQAYHLYD-VTR 318

Query: 205 ATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              G+ G+  + +LY G G  +  +A    +V+ +E    +++ A+ N   N++NN    
Sbjct: 319 KFAGLTGNELVYDLYTGTGTIANFVAPKAKKVIGIEYVPEAIKDAKVNSQINNINNTLFY 378

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320
               K+              ++      R + I  DPPR+G+    +  +   A   I+Y
Sbjct: 379 AGDMKDILS-----------QEFIEEHGRPEVIITDPPRAGMHPDVIQTILSAAPNRIVY 427

Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +SCNP +  RDL+  +  + +  +   D FP+T H+E  VLL R+
Sbjct: 428 VSCNPATQARDLADFNKDYKVTAVQPVDMFPHTPHVENVVLLERR 472


>gi|197302048|ref|ZP_03167109.1| hypothetical protein RUMLAC_00776 [Ruminococcus lactaris ATCC
           29176]
 gi|197298857|gb|EDY33396.1| hypothetical protein RUMLAC_00776 [Ruminococcus lactaris ATCC
           29176]
          Length = 559

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/394 (22%), Positives = 156/394 (39%), Gaps = 50/394 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI---W 52
            G +     YE+Q+  K  ++ ++M      +  IF S     +  HYR + EF     +
Sbjct: 81  GGCMYQTMSYEEQVKMKEGQIHRIMDPVVKGDY-IFESVKESPKEFHYRNKMEFSFGDEY 139

Query: 53  HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLR 101
            DG     +     T + +           +N ++  ++A            ++    LR
Sbjct: 140 KDGPLSLGLHKKGSTYDVLTAADCQLVHRDMNQILSCVLAYFREWNVSYYKKMQHTGYLR 199

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRA 155
             L +    T +    +VT           +E  + L         LH     +  + ++
Sbjct: 200 HLLLRRGDTTGEILVNLVTTTQEEHDLTELKEQLLELPLEGKIVGILHILNDSLSDVVKS 259

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLL 214
           ++T+I   +D+  E+L      L ++    SF QPN+     + E V      I+   + 
Sbjct: 260 DETRILYGQDFFYEKLL----GLQFKITPFSFFQPNSRGAEVLYETVREYIGDIENKTVF 315

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G G    VLA    +V+ VEI + +VEAA+ N   N ++N K +     +      
Sbjct: 316 DLFSGTGTIGQVLAPVAKKVIGVEIIEEAVEAAKENALRNGLSNCKFIAGDVFKVL---- 371

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
                      D    +   I +DPPR G+    +  +  Y    I+YISC   SL RDL
Sbjct: 372 -----------DEIEEKPDVIVLDPPRDGIHPKALPKILEYGVDRIVYISCKMTSLARDL 420

Query: 333 SILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
            ++    + +E++   DQF  T H+E  VLL  K
Sbjct: 421 EMMQMAGYRVEKMTAVDQFCETVHVESIVLLSHK 454


>gi|313205382|ref|YP_004044039.1| 23S rRNA m(5)u-1939 methyltransferase [Paludibacter propionicigenes
           WB4]
 gi|312444698|gb|ADQ81054.1| 23S rRNA m(5)U-1939 methyltransferase [Paludibacter propionicigenes
           WB4]
          Length = 469

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 142/398 (35%), Gaps = 46/398 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHI----W 52
                I  Y++Q+  K  ++   +           +  +  ++   YR + EF      W
Sbjct: 84  GCKWQILPYQEQINYKQKQVVDNLTRIGKIDLPPVSPILGSAKTEFYRNKLEFTFSNKRW 143

Query: 53  HDGDDLYHI-----------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL- 100
              +++                  Q  + + I+     +   N +  E+        L  
Sbjct: 144 RTNEEIAEGKIFDTMNAVGFHIPGQFDKVLDINKCWLQTEDSNEIRNEVRRYALEHELTF 203

Query: 101 ------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  +   T+ + + ++ +++     +A       + D        + +I  
Sbjct: 204 FDLRSQEGFLRTLMVRTTSTGELMIIMVFFHEDKEAQNALLQHIADKFPQITSLLYIINS 263

Query: 155 ANKTKICLDRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
                I     ++   +E +      L ++    SF Q N+      L  +      + G
Sbjct: 264 KANDTITDQEIHIFKGNECIYEEMEGLKFKIGPKSFYQTNSDQAYE-LYKITRNFAQLTG 322

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  ++    +V+ +E    ++E A  N   N ++N        K+ 
Sbjct: 323 NELVYDLYTGTGTIANFISHQAKQVIGIEYVPEAIEDAFVNSEINKISNTLFYAGDMKDI 382

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
             A   E              +   I  DPPR+G+ +  +  +   A   I+Y+SCNP +
Sbjct: 383 LNAAFIE-----------EHGKPDVIITDPPRAGMHEDVINAILFAAPERIVYVSCNPAT 431

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDLS+L   + +  +   D FP+T H+E  VLL RK
Sbjct: 432 QARDLSLLDCQYKVTAIQPVDMFPHTHHVENVVLLERK 469


>gi|332827346|gb|EGK00106.1| hypothetical protein HMPREF9455_03572 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 503

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 153/408 (37%), Gaps = 64/408 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWH--- 53
                I  Y +QL  K  ++   +      +L   +      +   YR + E+   +   
Sbjct: 116 GCKWQILPYAEQLKFKQKQVTDNLTRIGKVDLPEIQPILGSQKTEFYRNKLEYTFSNKKW 175

Query: 54  -----------------DGDDLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR 95
                            DG   +   MFD+     + I+       + N +   +     
Sbjct: 176 LTLEQLRSGENFADMNMDGLGFHIPGMFDK----VLDINKCWLQDDVSNQIRNFIRQYCH 231

Query: 96  LEPL----LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ 148
            +      LR +   +  +   TS + + +V ++++        +    + D        
Sbjct: 232 EKGYTFFDLRNRGGLMRNLIIRTSTTGELMVIVVFYDDEKQQQEDLLKAIADKFPQITAL 291

Query: 149 IQLIGRA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           + ++ +         ++      D++ E +      L ++    SF Q N+    + L  
Sbjct: 292 LYIVNQKANDTITDQEVLTWKGNDFIYEEM----EGLKFKIGPKSFYQTNSEQAYN-LYK 346

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V +    + GD  + +LY G G  +  +AR   +V+ +E  + ++E AR+N   N ++N 
Sbjct: 347 VASDFARLNGDELVYDLYTGTGTIANFVARQSKKVVGIEYVEDAIEDARFNSMNNKIDNT 406

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317
                  K+              +D      R   I  DPPR+G+ D  +  +       
Sbjct: 407 LFYAGDMKDILT-----------QDFINEHGRPDVIITDPPRAGMHDDVIKSILFAEPQR 455

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           I+Y+SCNP +  RDLS+L   + + ++   D FP+T H+E  VLL ++
Sbjct: 456 IVYVSCNPATQARDLSLLDEKYKVTKVQPVDMFPHTHHVENVVLLEKR 503


>gi|315224184|ref|ZP_07866024.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314945917|gb|EFS97926.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 471

 Score =  243 bits (620), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 138/400 (34%), Gaps = 49/400 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQ---MMLAFQVPN--LQIFRSEPIHYRMRAEFHI----W 52
                   Y+ QL  K   +      +   ++P     I   E  +YR + EF      W
Sbjct: 83  GCKWQDMNYQSQLFYKQKEVENNLVRLGRIKIPAVMPIIGSDETYYYRNKMEFSFSDMRW 142

Query: 53  HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
              D++                     + + ID     +   NA+ +E+        +  
Sbjct: 143 LTPDEIKKADEIDNRNALGFHIAGAWDKILDIDKCYLQADPSNAIRLEIKRFALANEMPF 202

Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  +    S   Q +V + + R  +D      +            +Q    
Sbjct: 203 YSPRQQTGLLRTMMIRISSIGQMMVVIQFFR--NDPKITLLLDHIAETFPMITSLQYCIN 260

Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
           +       D++ +     + +      L ++    SF Q N+      L  V      ++
Sbjct: 261 SKGNDAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSAQAYK-LYQVARNFADLK 319

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           GD  + +LY G G  +  +A+   +V+ VE    ++  A+ N  AN + NV       K 
Sbjct: 320 GDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAITDAKDNAFANGIENVTFYVGDMKN 379

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
                  E            +     I  DPPR G+    V  +   A   I+Y+SCN  
Sbjct: 380 IFNDTFIE-----------ENGTPDVIITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSA 428

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +  RDLS+L  T+ + ++   D FP T H+E  VLL ++ 
Sbjct: 429 TQARDLSLLDVTYKVTKVQPVDMFPQTYHVENVVLLEKRN 468


>gi|59712688|ref|YP_205464.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio fischeri ES114]
 gi|59480789|gb|AAW86576.1| 23S rRNA (uracil-5)-methyltransferase [Vibrio fischeri ES114]
          Length = 449

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 155/369 (42%), Gaps = 26/369 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58
              L   Q+E+Q+  K ++L+++M    V     +Q    E + YR RA   +       
Sbjct: 101 GCNLQHLQHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLML-NKQT 159

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
             + F  + K+   I       +L+  L   + +   L   L+ K         Q+D   
Sbjct: 160 NQLDFGFRKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKHLGHVELVQADNGS 219

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V LI H  + D   +    L +    R   + L+  A+     L+    +E   +   T 
Sbjct: 220 VLLIRH--VADFNEKDQQALVNYCEERNLILYLMPEAD----VLNHVRGEEPFYLIDGTK 273

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
           IY      F Q N  +N  M+E  L+     + D +L+L+CG GNFSL LA+    V+ +
Sbjct: 274 IY-FTPKDFIQVNRNVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGI 332

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E     V+ A+ N   N ++NV   + + +E             + +    S +F  I +
Sbjct: 333 EGVDEMVQRAKLNAERNQLSNVSFYQANLEE------------EVSEQVWASTKFTKILL 380

Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           DP R+G       + +  P  ++Y+SCNP +L RD  +L      + RL + D FP+T H
Sbjct: 381 DPARAGAAGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGH 440

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 441 LESMALFER 449


>gi|300923242|ref|ZP_07139296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           182-1]
 gi|301325725|ref|ZP_07219182.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           78-1]
 gi|300420481|gb|EFK03792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           182-1]
 gi|300847475|gb|EFK75235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           78-1]
          Length = 433

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +      +  + AL  ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALQPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|269965227|ref|ZP_06179361.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B]
 gi|269830213|gb|EEZ84440.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 40B]
          Length = 439

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD-- 56
              L    Y+QQL  K   LRQ+M  F   ++++      +   YR RA   ++ D    
Sbjct: 90  GCDLQHLDYDQQLTYKQQTLRQLMRKFSGSDIELDAPLLGDSQAYRRRARVSLFVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +N L+ E+ + ++       +L  ++ +   +  
Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSALKAFKK-PEQLGHVELVLGDNGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I TL +   L  +  +    L          + L+    +  +        + + V   
Sbjct: 209 CI-TLRHLSALTTSETQSLTELAKR---HGASLYLMPSTEQLDLIEGDIPFYQEVGVKIP 264

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
                   N+F Q N G+N  M++  +      + D +L+L+CG GNFSL +A+    V+
Sbjct: 265 -----FAPNNFIQVNQGVNQQMVKQAVEWLDPQKSDRVLDLFCGLGNFSLPVAKLAKHVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     VE A  N + N +NN +    + ++              +     + RF  +
Sbjct: 320 GVEGVAEMVEKATNNASLNQINNAQFYHANLEQ------------DFEGQAWAAERFDKV 367

Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
            +DP R+G       + +     ++Y+SCNP +L RD   L    + + +L + D FP+T
Sbjct: 368 LLDPARAGASGIIDQVSELGAQRVVYVSCNPATLARDSQSLIEQGYKLTKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 428 SHLESMALFEK 438


>gi|237738336|ref|ZP_04568817.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium mortiferum ATCC
           9817]
 gi|229420216|gb|EEO35263.1| tRNA (uracil-5-)-methyltransferase [Fusobacterium mortiferum ATCC
           9817]
          Length = 450

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 153/383 (39%), Gaps = 33/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57
                + +YE QL  K   +  +M      ++     I   +P HYR +          +
Sbjct: 81  GCDFGMLKYEAQLKYKKAMVEDVMKKIGKLDILVKDVIGSEDPYHYRNKIIEPFSKYNGE 140

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYL 110
           +    F +++ +  +++  +  S L N ++ E+   +  E +          KL  I   
Sbjct: 141 IITGFFKRKSHDIFQVEENILNSRLGNEIIRELKKILNREKVSVYDEKEHSGKLRHIMVR 200

Query: 111 TSQSDQAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR----D 165
           T+   +A+V LI +   ++   ++  + L++ + + K  I +     +T   L       
Sbjct: 201 TNSKGEAMVVLIINATKVEKRDKDILMELKNKITSIK-SIYISLNNKRTNFALGEKNIFI 259

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           + ++ +      + +     SF Q N      +    +     I+   +++ Y G G  +
Sbjct: 260 WGEKGIKEEIDGINFNISPKSFFQINLPQTKKLYSTAINYFPNIENKYIVDAYSGTGTIA 319

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           ++L++  ++V A+E+ + +          N + N++ +  + ++            ++ +
Sbjct: 320 MMLSKKAEKVYAIELVESATLDGMKTAGENGIENIEFINGAVED------------KMLE 367

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDLSILST-THTI 341
           +     R   I  DPPR G+++ ++          I+YISCNP +  RD  ILS   + I
Sbjct: 368 LINAGKRVDAIIFDPPRKGIEEKSLIKTAESGIKEIVYISCNPSTFARDAEILSRLGYKI 427

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +   D FP T H E      +
Sbjct: 428 DEVQPVDMFPGTSHTEVVGRFYK 450


>gi|284036603|ref|YP_003386533.1| RNA methyltransferase, TrmA family [Spirosoma linguale DSM 74]
 gi|283815896|gb|ADB37734.1| RNA methyltransferase, TrmA family [Spirosoma linguale DSM 74]
          Length = 476

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 144/402 (35%), Gaps = 54/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHD-- 54
                  QY +QL  K  ++   +       L  FR         +YR + EF       
Sbjct: 91  GCKWQHIQYSEQLGFKHQQVVDHLTRIGKVELPEFRPIMPAHPTQYYRNKLEFTCAEGRW 150

Query: 55  ------------GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99
                                  +  + + I +        NA+   + A +    +   
Sbjct: 151 LTSAEVGTNQPMDQRAVGFHVPGRFDKVLPIRHCYLQPDPSNAIREAIDAYVLQHDMTLY 210

Query: 100 --------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
                   LR  + +    T Q    +     +  L +        L   + +  Y +  
Sbjct: 211 NLKMHTGFLRTLIIRTADTTQQVMVTLQVAQDNPELLNGLMTYLQTLFPQITSLNYILNT 270

Query: 152 IGRAN--KTKIC--LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
               +    ++     + Y++E++      L +R    SF Q NA    + L  V     
Sbjct: 271 KKNDSYQDQEVVNWAGKPYIEEQM----EALTFRIGPKSFYQTNA-QQAYNLYKVAREFA 325

Query: 208 GIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   + +LY G G  +L +AR    V+ VE  + SV  AR N   N + N   V   
Sbjct: 326 GLTGQERVYDLYTGTGTIALFVARLAKHVVGVEYVEASVADARVNAQVNGIANTTFVAGD 385

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT-VGMVQAYP-HILYISC 323
            K                +      R   +  DPPR+G+D+A    +++A P  I+Y+SC
Sbjct: 386 MKAILTD-----------EFFAEHGRPDVVITDPPRAGMDEAVTRQLLKAAPERIVYVSC 434

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           N  +  RDL+IL   +T+  +   D FP+T H+E  V+L ++
Sbjct: 435 NTATQARDLAILDEGYTVTGVQPVDMFPHTHHVENVVVLTKR 476


>gi|16130692|ref|NP_417265.1| 23S rRNA m(5)U1939 methyltransferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|89109571|ref|AP_003351.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|157162239|ref|YP_001459557.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli HS]
 gi|170082356|ref|YP_001731676.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901923|ref|YP_002927719.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli BW2952]
 gi|254037835|ref|ZP_04871893.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia sp. 1_1_43]
 gi|256024712|ref|ZP_05438577.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp.
           4_1_40B]
 gi|300906690|ref|ZP_07124378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           84-1]
 gi|300950513|ref|ZP_07164423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           116-1]
 gi|300958099|ref|ZP_07170259.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           175-1]
 gi|301026290|ref|ZP_07189745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           196-1]
 gi|301304553|ref|ZP_07210663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           124-1]
 gi|301645251|ref|ZP_07245203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           146-1]
 gi|307139471|ref|ZP_07498827.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli H736]
 gi|312972999|ref|ZP_07787172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           1827-70]
 gi|331643470|ref|ZP_08344601.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H736]
 gi|1723811|sp|P55135|RUMA_ECOLI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|62738954|pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
           Methyltransferase Ruma In Complex With  Ribosomal Rna
           Substrate And S-Adenosylhomocysteine.
 gi|62738955|pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
           Methyltransferase Ruma In Complex With  Ribosomal Rna
           Substrate And S-Adenosylhomocysteine.
 gi|882679|gb|AAA69295.1| alternate gene name ygcA; ORF_f433 [Escherichia coli str. K-12
           substr. MG1655]
 gi|1789148|gb|AAC75827.1| 23S rRNA m(5)U1939 methyltransferase, SAM-dependent [Escherichia
           coli str. K-12 substr. MG1655]
 gi|85675604|dbj|BAE76859.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|157067919|gb|ABV07174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli HS]
 gi|169890191|gb|ACB03898.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|226839459|gb|EEH71480.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia sp. 1_1_43]
 gi|238859753|gb|ACR61751.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli BW2952]
 gi|260448164|gb|ACX38586.1| RNA methyltransferase, TrmA family [Escherichia coli DH1]
 gi|299879749|gb|EFI87960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           196-1]
 gi|300315219|gb|EFJ65003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           175-1]
 gi|300401525|gb|EFJ85063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           84-1]
 gi|300450173|gb|EFK13793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           116-1]
 gi|300840157|gb|EFK67917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           124-1]
 gi|301076454|gb|EFK91260.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           146-1]
 gi|309703143|emb|CBJ02477.1| 23s rRNA (uracil-5-)-methyltransferase [Escherichia coli ETEC
           H10407]
 gi|310332941|gb|EFQ00155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           1827-70]
 gi|315137392|dbj|BAJ44551.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli DH1]
 gi|315256644|gb|EFU36612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           85-1]
 gi|315615171|gb|EFU95808.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 3431]
 gi|323935853|gb|EGB32156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E1520]
 gi|323941534|gb|EGB37716.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli E482]
 gi|331036941|gb|EGI09165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H736]
 gi|332344676|gb|AEE58010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           UMNK88]
          Length = 433

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +      +  + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|300936300|ref|ZP_07151232.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           21-1]
 gi|300458552|gb|EFK22045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           21-1]
          Length = 433

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N ++NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|331084332|ref|ZP_08333436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330401596|gb|EGG81177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 472

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 83/408 (20%), Positives = 151/408 (37%), Gaps = 66/408 (16%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAF----------QVPNLQI----FRSEPIHYRMR 46
            G +     YE+QL  K  ++++++               P+          +   YR +
Sbjct: 79  GGCMYQTMSYEEQLNMKAAQVKKLIDEAVIRGGQVDTEGKPDYIFEGIKGSPQEFAYRNK 138

Query: 47  AEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------------ 94
            EF    +  D    +   +      +        L++  M +++  I            
Sbjct: 139 MEFSFGDEYKDGPLSLGLHKKGSTYDV-LNACDCKLVHEDMTKILTCILEYCREEGFSYY 197

Query: 95  ---RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---------RDAL 142
              +    LR  L +    T    + +V L+    ++  + E   RL            L
Sbjct: 198 HKMQHTGFLRHLLLRRGNTTG---EILVNLVTTSEIETDFAELQKRLLALPLEGKIVGFL 254

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
           H     +  + R+++T+I   +DY  E +      L ++    SF QPN+     + +  
Sbjct: 255 HIINNSLSDVVRSDETRILYGQDYFYEEIL----GLKFKITPFSFFQPNSYGAEVLYKTA 310

Query: 203 LAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                  +   + +LY G G  S ++A     V+ VEI + +V+AA  N   N + N + 
Sbjct: 311 REYIGDTKEMTVFDLYSGTGTISQIMASVAKEVIGVEIVEEAVKAAGENAHLNGIENCRF 370

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHIL 319
           +                   LK +D    +   I +DPPR G+    +  +       ++
Sbjct: 371 IAGDV---------------LKVLDDIQEKPDFIILDPPRDGIHPKALPKIIDYGVDKLV 415

Query: 320 YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           YISC P SL RDL   L   + +E++   DQF  T H+E   LL ++ 
Sbjct: 416 YISCKPTSLARDLEMFLGRGYQVEKVCCVDQFCQTVHVETVCLLSKRD 463


>gi|255549690|ref|XP_002515896.1| RNA m5u methyltransferase, putative [Ricinus communis]
 gi|223544801|gb|EEF46316.1| RNA m5u methyltransferase, putative [Ricinus communis]
          Length = 577

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 139/423 (32%), Gaps = 78/423 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50
                   YE Q+  K  ++R++++         P                HYR + EF 
Sbjct: 170 GCKTQNLSYEAQVRAKELQVRELVINIGKFSDIDPEFVSIMKPIVPCDVKFHYRNKMEFS 229

Query: 51  IWHDGDDLYHIMFDQQT---------------KERMRIDYFMPGSLLINALMIEMMATIR 95
                     ++ ++Q                 + + +D  +  S   N ++  +    R
Sbjct: 230 FGSKKWLPRELLGEKQDGSVNYALGLHAPGCFDKVLNVDKCLLQSEPANTVLATVQDCWR 289

Query: 96  LE-------------PLLRAKLFQIDYLTSQSDQAI----VTLIYHRLLDDAWRECAIRL 138
                            L+  + +    T      +    VT  Y   L     E    +
Sbjct: 290 DSQFGLTPYDVHSHDGFLKHLMLRTGRNTETGLLELMVNFVTSAYKPELLKIIVEKISAI 349

Query: 139 RD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
            +    ++     +       +      +  + E L    R L ++   NSF Q N    
Sbjct: 350 PEVVSIVNNVNSSVGNTSVGEEEYTIYGKSTITEIL----RGLTFQISANSFFQTNTRQA 405

Query: 196 VHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +L  ++    G++GD    +L+L+CG G   L LA     V   E+   ++  AR N 
Sbjct: 406 E-VLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLAGRAKHVYGYEVVPQAISDARRNA 464

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATV 309
             N + N   V+    + + +               +  +   +  DP R G+       
Sbjct: 465 ELNGITNATFVQGDLNKISDSF------------GNNFPKPDIVISDPNRPGMHMKLIKF 512

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360
            +    P I+Y+SCNP +  RDL  L            + ++ L   D FP+T H+EC  
Sbjct: 513 LLKLKAPRIVYVSCNPATCARDLDYLCHGVEEQNIKGCYKLKSLQPVDMFPHTPHIECVC 572

Query: 361 LLV 363
           LL 
Sbjct: 573 LLE 575


>gi|302345320|ref|YP_003813673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
           melaninogenica ATCC 25845]
 gi|302149971|gb|ADK96233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
           melaninogenica ATCC 25845]
          Length = 474

 Score =  242 bits (619), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 145/402 (36%), Gaps = 63/402 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WH------ 53
            YE+QL  K  ++   +       L  FR          YR + EF      W+      
Sbjct: 91  PYEEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCANKRWYTEEELK 150

Query: 54  ---------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----- 99
                    +G   +HI       +   I+       L N +  ++        +     
Sbjct: 151 ALPEGIGLAEGAIGFHITGAFD--KVYPIEKCWLMDDLCNEIRKDIRDYALSTGMKFYDI 208

Query: 100 --LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
                 L  I    S + + +V + +H   ++   E A  L   +  R  QI  +   + 
Sbjct: 209 RAQHGLLRDIMVRNSNTGEWMVLVQFHYD-EEGDDERAKALMQHIADRFPQISSLFYVDN 267

Query: 158 TK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
            K           +    D++ E +      L ++    SF Q N     H+        
Sbjct: 268 QKGNDTFNDLELTLFKGNDHIFETM----EDLRFKVGPKSFYQTNTEQAYHLYSVAREFA 323

Query: 207 KGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                +L+ +LY G G  +  +A+   +V+ +E    ++E A+ N   N ++N       
Sbjct: 324 NLTGNELVYDLYTGTGTIANFVAKKAQKVIGIEYVPEAIEDAKVNSEVNKIDNTLFYAGD 383

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
            K+              +D      R   I  DPPR+G+    V ++   +   I+Y+SC
Sbjct: 384 MKDILT-----------EDFISEHGRPDVIITDPPRAGMHPDVVNVILGASPKRIVYVSC 432

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +  RDL++L   + +  +   D FP+T H+E  VLL ++
Sbjct: 433 NPATQARDLALLDADYKVSAVQPVDMFPHTPHVENVVLLEKR 474


>gi|260912576|ref|ZP_05919108.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260633341|gb|EEX51499.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 502

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 145/399 (36%), Gaps = 57/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-----PIHYRMRAEFHIWHDG-------- 55
            YE+QL  K  ++   +       L  F         +HYR + EF   +          
Sbjct: 120 PYEEQLRAKQQQVYDQLSRISHVQLPTFYPIMGSQLTLHYRNKLEFGCSNKRWLTREEVA 179

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LR--- 101
               +  M            + + I+       L N +  E+      + +    LR   
Sbjct: 180 SGATFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEIRDYALTKGISFFDLRQQT 239

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-- 159
             L  +    S + + +V + +H       ++ A  L   +     QI  +   +  K  
Sbjct: 240 GLLRDVMIRNSDTGEWMVLVQFHFETATD-QQTAEALLAHVGEHFPQITSLLWVDNQKCN 298

Query: 160 ---------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209
                    +     ++ E +      L ++    SF Q N     H+ +     A+   
Sbjct: 299 DTFGDLPVHVFKGNGHIFEVM----EDLRFKVGPKSFYQTNTQQAYHLYDVARRFASLSG 354

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              + +LY G G  +  +AR   +V+ VE    ++E A+ N   N ++N        K+ 
Sbjct: 355 TETVYDLYTGTGTIANFVARQAKKVVGVEYVPEAIEDAKVNSELNGISNTTFYAGDMKDI 414

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDS 327
                         +   ++ +   I  DPPR+G+    +  +++A P  I+Y+SCNP +
Sbjct: 415 LND-----------EFIANNGQPDVIITDPPRAGMHADVIETIIRANPQRIVYVSCNPAT 463

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             RDL  L   + +  +   D FP+T H+E  VLL R+ 
Sbjct: 464 QARDLIALDERYAVTAVQPVDMFPHTPHVENVVLLERRN 502


>gi|326791294|ref|YP_004309115.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
           5427]
 gi|326542058|gb|ADZ83917.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
           5427]
          Length = 451

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 149/391 (38%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW---HD 54
             +     Y++Q+  K +++++++    + + +    I   E + YR + EF       D
Sbjct: 80  GCSAQNLDYDEQIHLKHEQVKELLTKAGISDYEDLGVIGSPEALAYRNKMEFSFGDEVKD 139

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL---- 110
           G     +     T + + +D  +      + ++  ++   +   L   K  Q        
Sbjct: 140 GPMTLGMHRKHSTYDVITVDGCLLVDEDFSTILRTILDYCKDNDLNYYKKMQHTGFMRYV 199

Query: 111 ----TSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGRANK 157
               +    + +V ++     D ++   A          +L   +H     +    +  K
Sbjct: 200 VIRKSITFGEILVNIVTSSQKDFSFIPLATLLAHLPLKGKLTGVIHTITDNLADAIKPEK 259

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLEL 216
             +   +D + E++      L +     SF Q N      + +  L+    +    + +L
Sbjct: 260 VSVIYGQDTIREQIL----GLQFNISPFSFFQTNTKGAELLYKNALSLIDDMDNKTVFDL 315

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  + ++A    +V  +EI + +++ A+ N   NH+ N   +              
Sbjct: 316 YCGTGTITQIMATRAKKVYGIEIVEEAIDKAKENAIFNHLTNCHFIAGDV---------- 365

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
                + ++D        I +DPPR G+    +  +       +LYISC P SL RDL I
Sbjct: 366 -----MVEVDQLKETPDIIILDPPRDGIHPKAIQKIINFGAKELLYISCKPTSLTRDLPI 420

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + I+++   D FP T H+E  V L +
Sbjct: 421 LKEAGYHIDKVLCVDMFPQTPHVETVVKLSK 451


>gi|332292761|ref|YP_004431370.1| RNA methyltransferase, TrmA family [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170847|gb|AEE20102.1| RNA methyltransferase, TrmA family [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 470

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 144/406 (35%), Gaps = 62/406 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPN--LQIFRSEPIHYRMRAEFHIW---- 52
                   Y+ QL  K   +    + +   ++P        SE   YR + EF       
Sbjct: 85  GCKWQHMDYKFQLEYKQQEVENNLKRLGKIELPELTPIAGSSEQYFYRNKMEFGFSDSKW 144

Query: 53  -----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEM 90
                       +  +           + + ID         NA+            +  
Sbjct: 145 LTLEQIKSDEVIEDRNALGFHIAGMWDKILDIDKCHLQRDPSNAIRNGIKEFATANNMAF 204

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
                 + LLR  + +    TS + + +V + + +   +        ++D        + 
Sbjct: 205 YNARNQDGLLRTLMIR----TSSNGELMVLVQFFKEETENRELLLNYIKDTWPEITSLLY 260

Query: 151 LIGRA------NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
           +I         ++  IC   RD++ E +      L ++    SF Q N+      L  + 
Sbjct: 261 VINSKGNDTIYDQEVICFSGRDHIFEEM----EGLKFKINAKSFYQTNSKQAYE-LYKIT 315

Query: 204 AATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
               G+ G+  + +LY G G  +  +A+   +V+ VE    ++EAA+ N   N + N + 
Sbjct: 316 RDFAGLSGNELVYDLYTGTGTIAQFVAKKARKVIGVEAVPDAIEAAKENAKLNGIENTEF 375

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHIL 319
                K+               D          I  DPPR G+    V  +   +   ++
Sbjct: 376 FVGDMKKVFN-----------TDFINTHGVPDIIITDPPRDGMHADVVQQIINISPEKVV 424

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           Y+SCN  +  RDL++L  T+ + ++   D FP T H+E  VLL ++
Sbjct: 425 YVSCNSATQARDLALLDDTYKVTKVQPVDMFPQTHHVENVVLLEKR 470


>gi|332087562|gb|EGI92690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii
           5216-82]
          Length = 433

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             + +       F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTNQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|157157194|ref|YP_001464107.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           E24377A]
 gi|170018969|ref|YP_001723923.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli ATCC
           8739]
 gi|193071100|ref|ZP_03052025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E110019]
 gi|256019428|ref|ZP_05433293.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9]
 gi|293449111|ref|ZP_06663532.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B088]
 gi|300820571|ref|ZP_07100722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           119-7]
 gi|300920362|ref|ZP_07136799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           115-1]
 gi|307312786|ref|ZP_07592416.1| RNA methyltransferase, TrmA family [Escherichia coli W]
 gi|309795251|ref|ZP_07689670.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           145-7]
 gi|331669519|ref|ZP_08370365.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA271]
 gi|331678762|ref|ZP_08379436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H591]
 gi|331684405|ref|ZP_08384997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H299]
 gi|332280548|ref|ZP_08392961.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9]
 gi|157079224|gb|ABV18932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E24377A]
 gi|169753897|gb|ACA76596.1| RNA methyltransferase, TrmA family [Escherichia coli ATCC 8739]
 gi|192955561|gb|EDV86039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E110019]
 gi|291322201|gb|EFE61630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B088]
 gi|300412625|gb|EFJ95935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           115-1]
 gi|300526835|gb|EFK47904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           119-7]
 gi|306907221|gb|EFN37727.1| RNA methyltransferase, TrmA family [Escherichia coli W]
 gi|308121222|gb|EFO58484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           145-7]
 gi|315062067|gb|ADT76394.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli W]
 gi|320202429|gb|EFW76999.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           EC4100B]
 gi|323172912|gb|EFZ58543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           LT-68]
 gi|323183324|gb|EFZ68721.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 1357]
 gi|323377350|gb|ADX49618.1| RNA methyltransferase, TrmA family [Escherichia coli KO11]
 gi|331063187|gb|EGI35100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA271]
 gi|331073592|gb|EGI44913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H591]
 gi|331078020|gb|EGI49226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H299]
 gi|332102900|gb|EGJ06246.1| 23S rRNA 5-methyluridine methyltransferase [Shigella sp. D9]
          Length = 433

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|325297416|ref|YP_004257333.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM
           18170]
 gi|324316969|gb|ADY34860.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM
           18170]
          Length = 474

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 146/397 (36%), Gaps = 57/397 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG--------- 55
           Y  Q+  K  ++   +              I   + ++YR + EF   +           
Sbjct: 92  YADQIRYKQKQVYDNLTRIGKIELPEISPIIGSEKTMYYRNKLEFTFSNKRWLTEEEVKQ 151

Query: 56  DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK-- 103
           D  Y  M            + + I+       + N +   +             LR +  
Sbjct: 152 DVKYEQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDYAYEHQYAFFNLRTQEG 211

Query: 104 -LFQIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRA---- 155
            L  +   TS + + +V L    + D+     +E    + D        + ++       
Sbjct: 212 MLRNMMVRTSSTGELMVLLQCKIVNDEELEKMKELLQFVADKFPQITSLLYVVNNKCNDT 271

Query: 156 -NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
                +C+   +D++ E +      L ++    SF Q N+    + L  V     G+ G+
Sbjct: 272 IGDLDVCVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARDFAGLTGN 326

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+  
Sbjct: 327 ELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSELNGIKNTLFYAGDMKDIL 386

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSL 328
                       +D      R   I  DPPR+G+    + ++ A     I+Y+SCNP + 
Sbjct: 387 T-----------EDFIRTHGRPDVIITDPPRAGMHGDVIQVILAAEPERIVYVSCNPATQ 435

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL +L   + ++ +   D FP+T H+E  VLL +K
Sbjct: 436 ARDLQLLDVKYKVKAVQPVDMFPHTHHVENVVLLEKK 472


>gi|24114069|ref|NP_708579.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 2a
           str. 301]
 gi|30064130|ref|NP_838301.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 2a
           str. 2457T]
 gi|50401544|sp|Q83QD5|RUMA_SHIFL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|24053196|gb|AAN44286.1| putative enzyme [Shigella flexneri 2a str. 301]
 gi|30042386|gb|AAP18111.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|281602145|gb|ADA75129.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Shigella flexneri
           2002017]
 gi|313647845|gb|EFS12291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri 2a
           str. 2457T]
 gi|332753501|gb|EGJ83881.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           4343-70]
 gi|332753637|gb|EGJ84016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           K-671]
 gi|332754531|gb|EGJ84897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           2747-71]
 gi|332765736|gb|EGJ95949.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           2930-71]
 gi|332999536|gb|EGK19121.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           VA-6]
 gi|333000330|gb|EGK19913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           K-218]
 gi|333001142|gb|EGK20712.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           K-272]
 gi|333015340|gb|EGK34680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           K-304]
 gi|333015781|gb|EGK35118.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella flexneri
           K-227]
          Length = 433

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +      +  + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|27364943|ref|NP_760471.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio vulnificus CMCP6]
 gi|320155330|ref|YP_004187709.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio vulnificus
           MO6-24/O]
 gi|50401570|sp|Q8DC67|RUMA_VIBVU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|27361089|gb|AAO09998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio vulnificus
           CMCP6]
 gi|319930642|gb|ADV85506.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio vulnificus
           MO6-24/O]
          Length = 438

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 145/374 (38%), Gaps = 36/374 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56
              +    Y+ QLA K   L Q+M  F     +I  S P       YR RA   +  D  
Sbjct: 90  GCDMQHMDYQAQLAYKQRTLLQLMKKFSGS--EILLSPPVTGLEKAYRRRARVSLMWD-K 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQS 114
               + F  + K+  +I+      +L+  L   +     +    +    L  ++ + + +
Sbjct: 147 KSRQLQFGFRRKQSKQIENVTQCPVLVAELECLLPELKAILSHFQHPEHLGHVELVAADN 206

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTV 173
              I       LLD    E   +LR      +  + L+  +++  +I  +  Y  E    
Sbjct: 207 GAVITLRHTGPLLD----EDVAKLRQCAEQHQATLYLMPASDQLERISGEAPYYQEI--- 259

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
                      N+F Q N  +N  M+   L        D +L+L+CG GNFSL +A    
Sbjct: 260 ---GFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSDRVLDLFCGLGNFSLPIASKAK 316

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V  VE     V+ A  N + N +NN +    + ++                    S +F
Sbjct: 317 SVTGVEGVDEMVQKAAINASLNQINNAQFFHANLEQ------------DFVGQPWASEKF 364

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350
             I +DP R+G       +       ++Y+SCNP +L RD  S+L   + + +L + D F
Sbjct: 365 DKILLDPARAGASGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLTKLGMLDMF 424

Query: 351 PYTRHMECGVLLVR 364
           PYT H+E   L  +
Sbjct: 425 PYTSHLESMALFEK 438


>gi|329769977|ref|ZP_08261374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
           M325]
 gi|328837537|gb|EGF87164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
           M325]
          Length = 452

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 38/383 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ---VPN---LQIFRSEPI-HYRMRAEFHIWHDGDD 57
           L    YE+QL  K + L      +     P+   L+   S    HYR + +F +      
Sbjct: 86  LAHVSYEKQLEYKRNILLDAFDKYYRIPKPDKLVLKTLASPTTEHYRNKNQFPLAVRNGR 145

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           +   ++ + T E + I+  +        I AL  + +   ++      K + + Y+ +++
Sbjct: 146 VIAGLYKEGTNELVEINEDIALHENGNKITALAKKCLGKYKVAISTNKKNYGVKYIATRT 205

Query: 115 ----DQAIVTLIYH----RLLDDAWRECAIR--LRDALHARKYQIQLIGRANKTKICLDR 164
                   +T + +    + LD    E      ++  +         +   ++       
Sbjct: 206 SFYNGDVQLTFVANTDKIKNLDKVVNEIKRERIVKSIILNVTNDNDHLVMGSENITLYGA 265

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ E++      + Y     SF Q N      + + V+      + D+ L+ +CG G  
Sbjct: 266 DYIVEKIG----DIKYELSAKSFFQLNPLATKKLYDKVVEFANLKETDVVLDAFCGVGTI 321

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
              ++     V  V+I   +++ A  N+  N++ N   V   + +     ++        
Sbjct: 322 GQYVSSKCKEVYGVDIVSDAIKDANDNVKLNNLTNCTYVAGDANKIVPRWKK-------- 373

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                   F    VDPPR GL      ++      I+Y+SCNP +L RDL +L+  + I 
Sbjct: 374 ----KGINFDVAIVDPPRVGLGHLAKNLLNVDAKKIVYVSCNPSTLARDLKVLTRKYKIR 429

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+   D FP T  +E  V L RK
Sbjct: 430 RIQPVDMFPGTAAVEAVVELTRK 452


>gi|324119827|gb|EGC13706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           E1167]
          Length = 433

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|331654268|ref|ZP_08355268.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M718]
 gi|331047650|gb|EGI19727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M718]
          Length = 433

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 141/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + E + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSEIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVSALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|215488102|ref|YP_002330533.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312964949|ref|ZP_07779189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           2362-75]
 gi|215266174|emb|CAS10600.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312290505|gb|EFR18385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           2362-75]
 gi|323188799|gb|EFZ74084.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           RN587/1]
          Length = 433

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|317056338|ref|YP_004104805.1| TrmA family RNA methyltransferase [Ruminococcus albus 7]
 gi|315448607|gb|ADU22171.1| RNA methyltransferase, TrmA family [Ruminococcus albus 7]
          Length = 453

 Score =  242 bits (618), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 141/388 (36%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
             +     YE +   K   +R         + +        +   YR +A++ +  D   
Sbjct: 82  GCSFRHISYEAECRAKDKFIRDSFDRIGKLSPEYMEFCGCKDTDLYRNKAQYPVADDNGK 141

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKLFQ 106
                + +++   +         ++           +N   I     I L  LLR    +
Sbjct: 142 AVCGFYAKRSHRVVEYTRCRLQPVIFSEIVEFIMGYVNDRHIPAYNEISLTGLLRHIYLR 201

Query: 107 IDYLTSQSDQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
               + +    +V     +      L    +E    +R  +     +   +   ++ K  
Sbjct: 202 RGAYSGEIMVCLVVTDLKKASVFDKLAILLKEKFSDIRTVVLNENPKNTNVILGSRMKAI 261

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
           +    +++ +     +        SF Q N      + +     A       LL+LYCG 
Sbjct: 262 VGDGTINDTMCGNNIS----ISPLSFYQVNTHQAELLYKKAGEFAQLSHDSTLLDLYCGT 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L +AR   +++ VE+ + +++ A+ N  AN + N + +   + +  Q +    E  
Sbjct: 318 GTIGLSMARQVKKLIGVEVIQAAIDNAKANAKANDITNTEFICGDAGKIAQVLYERGE-- 375

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST- 337
                     R   I  DP R G D A++  +       I+ ISCN  +  RD +IL+  
Sbjct: 376 ----------RPDVIIADPARKGCDRASLEYMAKMSPDRIVMISCNHTTAARDCAILAEL 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            +T +++  FD FP T H+E  VLL RK
Sbjct: 426 GYTCDKVMGFDLFPRTSHVETVVLLSRK 453


>gi|170077182|ref|YP_001733820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
           7002]
 gi|169884851|gb|ACA98564.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
           7002]
          Length = 452

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 151/383 (39%), Gaps = 50/383 (13%)

Query: 8   DQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSE--PIHYRMRAEFHIWHDG--DDLYH 60
           D  +QQ+  K + ++Q +     FQ  ++Q   S   P+ YR +A + +       ++  
Sbjct: 87  DSLQQQV--KTNEIQQALQRIGGFQDLDIQPILSGDGPLSYRNKATYPLGRSSSMGNVQA 144

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109
             + + + + + ++        +N L+  +   I+ +             LR    +I  
Sbjct: 145 GYYRKGSHQLINLNQCPVQDSRLNPLLENVKIDIQNQGWSIYNETKHQGKLRHLALRIGQ 204

Query: 110 LTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
            T +    +++    LI      + W E    L         +   +   + TK    R 
Sbjct: 205 RTGEMLLTLISTSGDLINLETQAETWLEEYPGLVGVCLNENPKKGNLIWGDTTKAIAGRP 264

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNF 223
           Y++E        L  +    +F Q N      +L   +       G+  L++ YCG G F
Sbjct: 265 YLEEIFA----GLTLKLRPETFFQVNTSAAEALL-TAITQQLTFTGEEILVDAYCGVGTF 319

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L LA+   + + +E+   S++ A  N   N ++NV+    + +    ++          
Sbjct: 320 TLPLAKKVQQAIGIEVQASSIQQAWENAHHNDIHNVEFYAGTVESILPSL---------- 369

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT--H 339
                      + +DPPR G D   +  +       I+YISCNP +L RDL  L  T  +
Sbjct: 370 -----DVTADIVLLDPPRKGCDRQVLDALLHSKPKQIVYISCNPATLARDLKHLCATQQY 424

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
            I+ +   D FP T H+EC VLL
Sbjct: 425 QIQWVQPADFFPQTPHVECAVLL 447


>gi|239617809|ref|YP_002941131.1| RNA methyltransferase, TrmA family [Kosmotoga olearia TBF 19.5.1]
 gi|239506640|gb|ACR80127.1| RNA methyltransferase, TrmA family [Kosmotoga olearia TBF 19.5.1]
          Length = 440

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 159/377 (42%), Gaps = 40/377 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMF 63
           QY  QL  K   +++        +++P+ ++  S+   HYR R E+  +  G  +   M+
Sbjct: 82  QYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNRMEYVAYQKGKKIGFGMY 141

Query: 64  DQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLR----AKLFQIDYLTSQSDQ 116
            + + E + ++    G      +     E+++   ++P  R      L  +    +++  
Sbjct: 142 KRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNRESKRGFLKHLVLRGNRNGD 201

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT------KICLDRDYVDER 170
            +  LI  R       + +  +++ L      + +    +        ++      + E 
Sbjct: 202 IVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDDVVLRGPYRVIYGEGIITET 261

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L  A    +++    SF Q N  +   +L++V         +  L+LY G G F+   AR
Sbjct: 262 LGDA----VFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETFLDLYSGIGTFAFYFAR 317

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
            F +V+AVE  K S  A   N   N ++N++ V M +++F +                  
Sbjct: 318 MFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDFLEKNEE-------------- 363

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALF 347
            +F  + +DPPR+G+      + +A P  I+YISCNP +L RD   LS    +++ L  F
Sbjct: 364 -KFDKVILDPPRAGIGKDIELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKALRAF 422

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP T H+E   +  R
Sbjct: 423 DMFPDTHHVEVVAIFNR 439


>gi|191168556|ref|ZP_03030341.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B7A]
 gi|190901403|gb|EDV61167.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B7A]
          Length = 433

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLALYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|297835104|ref|XP_002885434.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297331274|gb|EFH61693.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 559

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 144/423 (34%), Gaps = 78/423 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50
                   YE QL  K +++ +++          P L+I            +YR + EF 
Sbjct: 145 GCKTQNLSYEAQLKAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFNYRNKMEFS 204

Query: 51  IWHDGDDLYHIMFDQQT---------------KERMRIDYFMPGSLLINALMIEMMATIR 95
                     ++ +++                 + + +D  +  S   N ++  +    R
Sbjct: 205 FGPQRWLPIEMLHEKEDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAVQDCWR 264

Query: 96  LEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAIRL--- 138
              L             L+  + +    + + S + +V  +      +  +    R+   
Sbjct: 265 DPALSLSPYNCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYEPELLKPLVDRISSI 324

Query: 139 ---RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
                 ++     +       K      +D + E L    R L ++   NSF Q N    
Sbjct: 325 PQVVSIMNNVNSSVGNTSVGEKEYTLYGKDTITEVL----RGLTFQISANSFFQTNTHQA 380

Query: 196 VHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +L  ++  + G++GD    +L+L+CG G   L LAR    +   E+   ++  A  N 
Sbjct: 381 E-VLYKLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHIYGYEVVPQAITDAHKNA 439

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATV 309
             N + N   ++    +  +            D   +  +   +  DP R G+       
Sbjct: 440 QINGIENATFIQGDLNKIGE------------DFGNNFPKPDIVISDPNRPGMHMKLIKF 487

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360
            +    P I+Y+SCNP +  RDL  L            + +  +   D FP+T H+EC  
Sbjct: 488 LLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNIKGCYKLMSVQPVDMFPHTPHIECVC 547

Query: 361 LLV 363
            L 
Sbjct: 548 FLE 550


>gi|15674161|ref|NP_268336.1| hypothetical protein L37880 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|50401786|sp|Q9CDP0|YWFF_LACLA RecName: Full=Uncharacterized RNA methyltransferase ywfF
 gi|12725241|gb|AAK06277.1|AE006446_9 hypothetical protein L37880 [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 513

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 139/405 (34%), Gaps = 55/405 (13%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWH-DGD 56
           ++   Y  QL  K D +RQ +  ++            +     + YR + +F +   +  
Sbjct: 85  IMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQ 106
            +   ++ + T   + +D  +        ++  +   I    L          +R  + +
Sbjct: 145 TVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIRTVMVR 204

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------------RLRDALHARKYQ 148
               T +     VT     L    W E                      L +        
Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFEEIVTV 264

Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVL 203
                    ++I  +R  +     E +T       +     +F Q N+     +  E V 
Sbjct: 265 AVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A        +++ YCG G     +A+    V  ++I   S+  AR N     + N     
Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321
             ++       +              +R   + VDPPR+GLDDA +  +  +P   ++Y+
Sbjct: 385 GKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYV 432

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           SCN  +L +DL +L+  + +E +   D FP+T   E  V L ++ 
Sbjct: 433 SCNVSTLAKDLVVLANFYKVEYIQSVDMFPHTARTEAVVKLTKRD 477


>gi|326407755|gb|ADZ64826.1| uracil-5-23S rRNA methyltransferase RumA [Lactococcus lactis subsp.
           lactis CV56]
          Length = 513

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 139/405 (34%), Gaps = 55/405 (13%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWH-DGD 56
           ++   Y  QL  K D +RQ +  ++            +     + YR + +F +   +  
Sbjct: 85  IMHLSYPMQLEFKHDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVRRLNDG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKLFQ 106
            +   ++ + T   + +D  +        ++  +   I    L          +R  + +
Sbjct: 145 TVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIRTVMVR 204

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------------RLRDALHARKYQ 148
               T +     VT     L    W E                      L +        
Sbjct: 205 RSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFEEIVTV 264

Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVL 203
                    ++I  +R  +     E +T       +     +F Q N+     +  E V 
Sbjct: 265 AVNFHPRKTSEIYGERTQILFNEKETITEGVLDYEFELSPRAFYQLNSEQANVLYGEAVK 324

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A        +++ YCG G     +A+    V  ++I   S+  AR N     + N     
Sbjct: 325 ALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHYEI 384

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321
             ++       +              +R   + VDPPR+GLDDA +  +  +P   ++Y+
Sbjct: 385 GKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYV 432

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           SCN  +L +DL +L+  + +E +   D FP+T   E  V L ++ 
Sbjct: 433 SCNVSTLAKDLVVLANYYKVEYIQSVDMFPHTARTEAVVKLTKRD 477


>gi|320182397|gb|EFW57294.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii ATCC
           9905]
          Length = 433

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             + +       F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTNQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|320173231|gb|EFW48441.1| 23S rRNA 5-methyluridine methyltransferase [Shigella dysenteriae
           CDC 74-1112]
          Length = 433

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 143/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M  ++V   ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM-KYEVS--EVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVASALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|311747752|ref|ZP_07721537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1]
 gi|311302702|gb|EFQ79251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1]
          Length = 468

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 149/402 (37%), Gaps = 53/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEF------- 49
                   YE Q   K  ++                  +   +  +YR + +F       
Sbjct: 83  GCKWQHINYELQKNYKRQQVLDQFQRIAKVETPEISPIVGSEKTTYYRNKLDFTFSNKKW 142

Query: 50  ----HIWHDGDDLYHIMFDQQTK---ERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99
                I  + +   + +     K   + + +D+      + N +  E+ A      L   
Sbjct: 143 LTLEQIQSEDEFDRNALGFHIPKMFDKIVDVDHCYLQGGISNDVRNELRAFALENELSFY 202

Query: 100 -LR---AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-R 154
            +R     L  +   T+ + Q +V + +     +   +    L+         + +I  +
Sbjct: 203 DIRNQVGLLRNLIIRTTSTGQTMVIVQFGESDLELIPKVMEFLKIRFPEITSLLYVINTK 262

Query: 155 ANKTKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
            N+T   L         Y++E +      L +R    SF Q N+      L  +      
Sbjct: 263 GNETFHDLELVTYAGLPYIEEEM----EGLKFRIGPKSFYQTNSEQAYE-LYKITRDFAE 317

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++GD  + +LY G G  +  +A+   +V+ VE  + ++  A+ N   N + N        
Sbjct: 318 LKGDEIVYDLYTGTGTIANFVAKKAKQVIGVEYVEAAIADAKINSQINGIENTLFYAGDM 377

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
           KE               +   +      I  DPPR+G+D+  V M+   A P I+Y+SCN
Sbjct: 378 KEILND-----------EFIENHAAPDVIITDPPRAGMDEKVVQMLLKLAAPKIVYVSCN 426

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           P +  RDL++L   + ++++   D FP T H+E  VLL  K 
Sbjct: 427 PATQARDLALLGEKYDVQKVQPVDMFPQTYHVENVVLLTLKK 468


>gi|261211546|ref|ZP_05925834.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC341]
 gi|260839501|gb|EEX66127.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC341]
          Length = 440

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 149/372 (40%), Gaps = 30/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQINHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + + +       +NAL+ E+  T+  +      L  ++ +   +  
Sbjct: 150 QLQFGFRRKQSKAIVNVTHCPVLEPSLNALLPEL-NTLLSQWSQPELLGHVELVKGDNTP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +V     R L     +    L D    +   + L   A   +         E       
Sbjct: 209 VLVL----RHLGVLAEQDRQSLSDFATQKGLTLYLTLEAGALQHVQGESPYCEETGSCL- 263

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
               R + N F Q N  +N  M+E  L       Q  +L+L+CG GNF+L LA     V+
Sbjct: 264 ----RFLPNHFIQVNRSVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAAQAQEVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E  +  V+ A +N   N +NNV   + + ++             + +      +F  +
Sbjct: 320 GIEGVEEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTNASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
            +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+T
Sbjct: 368 LLDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFHLEKLGMLDMFPHT 427

Query: 354 RHMECGVLLVRK 365
            H+E   L V+K
Sbjct: 428 SHLESMALFVKK 439


>gi|119483398|ref|ZP_01618812.1| 23S rRNA methyltransferase/RumA [Lyngbya sp. PCC 8106]
 gi|119458165|gb|EAW39287.1| 23S rRNA methyltransferase/RumA [Lyngbya sp. PCC 8106]
          Length = 466

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 144/402 (35%), Gaps = 58/402 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPI-HYRMRAEFHIWHDG- 55
                   Y+ QL  K + + Q +       Q P   I  S  + +YR +A + +     
Sbjct: 84  GCQWQHIDYDAQLTTKQNLVVQALEHIGGFSQPPVSPILPSPSLLNYRNKATYPLSRSST 143

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
             +    + + +   + ++                   I      +    + + ++R   
Sbjct: 144 GQVRAGYYQKGSHRLINLNQCPVQDENLDPFLANIKQDIQDQGWSIYNERQHQGIIRHLS 203

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +I   T +    ++       L++    W +   +L             +   +KT   
Sbjct: 204 LRIGRRTGEILLTLIATRSLPRLEEQAETWLQQYPQLVGVCLNINPNQTNVIFGDKTHCV 263

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCG 219
             + ++ E        L +     +F Q N      +L  V+     +QG   +++ YCG
Sbjct: 264 KGQGFLREEFA----GLTFNLTPETFFQVNTEAAETVL-KVIQQQLNLQGSEMIIDAYCG 318

Query: 220 NGNFSLVLARHF------------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G  +L +A+H              +V+ +E+   +++ A  N   N ++NV     + +
Sbjct: 319 IGTLTLPIAKHIQLLASSPEKNSQKQVIGIEVQPSAIQQAYQNAGLNGIDNVTFETGTVQ 378

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNP 325
           +                    S +   I +DPPR G D   +  +++  P  I+Y+SC P
Sbjct: 379 KVLSRF---------------SLKPDIILLDPPRKGCDRQVLESLLKLQPTQIVYMSCKP 423

Query: 326 DSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
            +L RDL IL     + + ++   D FP T H+EC   L  K
Sbjct: 424 ATLARDLKILCENGFYHLTQVQPVDFFPQTPHVECVAFLEAK 465


>gi|313113178|ref|ZP_07798804.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624517|gb|EFQ07846.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 456

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 135/390 (34%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDG-D 56
             +L    Y  +L  K + +                 +   E   YR + +F +  D   
Sbjct: 82  GCSLRHLDYAAELRAKQENVADAFARIGGLDVPVLPIVGSPEVNRYRNKVQFPVGVDKSG 141

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109
                 +  +T   +          ++N +   + A           E   R  +  I  
Sbjct: 142 KPCIGFYAGRTHRIVPCPDCRLQPGVLNEIGNALCAFFAEKGIQPYSEETGRGLVRHIFL 201

Query: 110 LTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDA-------LHARKYQIQLIGRANKTKIC 161
                S Q +V L+  R    +  E   RL+         L     +   +    +T   
Sbjct: 202 RRGAHSGQIMVCLVCTRAKLPSAEELCTRLKAQFAEITTILLNVNAKNTNVILGTETHTL 261

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             + Y+++ L      +  +    SF Q N     H+       A       LL+LYCG 
Sbjct: 262 YGQGYIEDTLC----GVPVQLGPLSFYQVNTLAAEHLYGIAAQYAQLTPDDLLLDLYCGM 317

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV---KIVRMSSKEFTQAMRRER 277
           G   L +A H   ++ VEI   ++E+A+ N A    +     +     + +    +  E 
Sbjct: 318 GTIGLSMAAHCRELIGVEIVPEAIESAKANAARMGADVAAKSRFFCADAGQAATRLAAE- 376

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                            + +DPPR G D+AT+  V   +   ++Y+SCNP +  RD + L
Sbjct: 377 -----------GLHPDIVMLDPPRKGCDEATLSAVVRMSPRRVVYVSCNPATAARDAAWL 425

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVR 364
               +  E++   D FP TRH EC +   +
Sbjct: 426 EQNGYHAEKVQPVDLFPRTRHCECVLSFSK 455


>gi|118580203|ref|YP_901453.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118502913|gb|ABK99395.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter propionicus DSM
           2379]
          Length = 446

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 142/378 (37%), Gaps = 28/378 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM-----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             +     Y +QL EK       +        ++    +       YR R +F +   G 
Sbjct: 80  GCSWQHIAYHRQLEEKRRIFADALWRGARAPGELVADVVASPLTYGYRSRVQFKLHGAGP 139

Query: 57  DLYHIMFDQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           +L    + Q T               +IN ++  +   +   P    K+ QI+   ++  
Sbjct: 140 NLRIGFYRQGTHFVEDAGQGCPIALPVINRILGSLREMLPAFPD-PTKIPQINLECAEKG 198

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI----CLDRDYVDERL 171
             ++          A      R      A    +Q   ++   K+     L      E  
Sbjct: 199 AVVIVNYIGDDHQGAKAFFRERAAQLEQATALYLQTGRKSTLQKVFGDDLLQYSQEGESS 258

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230
           T    +L YR     F Q NA  N  +L  V   A       +L+LYCGNGNFSL LAR 
Sbjct: 259 TAPACSLTYR--PGGFAQVNAAQNSALLRLVREFADCRRDDQILDLYCGNGNFSLPLARG 316

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V  +E    S+ AAR+N   N + NV+ +   +      +  +              
Sbjct: 317 VAAVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAGKLMGD------------GR 364

Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
           RF TI +DPPRSG  D    + +     I+YISC+P +L RD  +L    +T+      D
Sbjct: 365 RFPTIILDPPRSGAADLLEHIPRLGADKIIYISCDPSTLARDCGVLFGKGYTVVSSVPVD 424

Query: 349 QFPYTRHMECGVLLVRKP 366
            FP T H+E   LL R+ 
Sbjct: 425 MFPQTFHLESVTLLRRRN 442


>gi|302670355|ref|YP_003830315.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302394828|gb|ADL33733.1| 23S rRNA methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 470

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 157/405 (38%), Gaps = 61/405 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEP--IHYRMRAEFHIWHD 54
             + L   Y ++L  K  ++R ++        + F     ++ P    YR + EF    +
Sbjct: 79  GCSYLTMPYVKELGLKEQQVRALLKPAMDRQTERFTWEGIKTSPVKFAYRNKMEFSFGDE 138

Query: 55  --GDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL---------------MIEMMATIRL 96
             G  L   M  + +  + + +           A+                I     ++ 
Sbjct: 139 VMGGPLCLGMHKKGSFYDIVTVSGCRIVDDDYRAILSATLDYFSPMYASGEISFYHRMKQ 198

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQ 150
              LR  L +    T      I+T          +++  +      R+   LH +   + 
Sbjct: 199 TGYLRHLLVRKAVRTGDILVDIITTTQEEHDLTGFKDALLGLSLSGRITGILHTKNDSLA 258

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI- 209
                  T+I   +D+  E L      L +R    SF Q N+     + + V +  K + 
Sbjct: 259 DAVIDEGTEILYGQDFFYEHLL----GLKFRITPFSFFQTNSLSAEVLYQTVRSYIKSLY 314

Query: 210 -------QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                   G + +LY G G  + +LA   ++V+ VEI + +VEAA+ N   N+++N + +
Sbjct: 315 DQKKISKDGIIYDLYSGTGTIAQLLAPVANKVIGVEIVEEAVEAAKENAKLNNLDNCEFI 374

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320
                              LK +D    +   I +DPPR G++   +  +  Y   +++Y
Sbjct: 375 AGDV---------------LKVLDEIEDKPDMIILDPPRDGINPKALQKIIGYGVKYMIY 419

Query: 321 ISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +SC P SL RDL +L    + + R    DQFP+T H+E  VLL +
Sbjct: 420 VSCKPTSLARDLEVLQENGYVMTRAVAVDQFPWTSHVETVVLLTK 464


>gi|89890519|ref|ZP_01202029.1| RNA methyltransferase [Flavobacteria bacterium BBFL7]
 gi|89517434|gb|EAS20091.1| RNA methyltransferase [Flavobacteria bacterium BBFL7]
          Length = 485

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 140/400 (35%), Gaps = 54/400 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------ 50
                   YE QL  K   + + +                  E  +YR + EF       
Sbjct: 99  GCKWQHMSYESQLFFKQKEVVENLTRIGHLELPEVTPIAGSEEQYYYRNKMEFSFSASRW 158

Query: 51  ---------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
                    +  +              + + +D       +   + + + A    E +  
Sbjct: 159 LTLEEIQSEVQIEDKKALGFHIPGMWDKILHLDECHLHPAIGEQIRLSVHAFAEAEQIEY 218

Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  +    S + + +V + + +  + A       L+++    K    +I  
Sbjct: 219 FNPREKTGVLRTLMLRMSSTGEIMVVIQFFKEDEKARISLLEHLKNSFPQIKSLQYIINE 278

Query: 155 A------NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
                  ++  IC   RD++ E +      L ++    SF Q N+      L  +     
Sbjct: 279 KANDTIYDQEVICYDGRDHIFEEM----EGLQFKINAKSFYQTNSKQAFE-LYKITRDFA 333

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + +LY G G  +  +A+  + V+ +E    ++E A+ N A N ++N       
Sbjct: 334 GLTGEELVYDLYTGTGTIAQFVAKKANHVVGIESVPVAIEDAKANAAHNGIDNTTFFAGD 393

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISC 323
            ++   A           D          +  DPPR G+    V   +  A P I+Y+SC
Sbjct: 394 MRDVFTA-----------DFIAEHGAPDVVITDPPRDGMHKDVVAQLLALAAPRIVYVSC 442

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           N  +  RDL++L+  + + +    D FP T H+E  VLL 
Sbjct: 443 NSATQARDLALLNEQYKVVKYQPVDMFPQTHHVESVVLLE 482


>gi|322419663|ref|YP_004198886.1| TrmA family RNA methyltransferase [Geobacter sp. M18]
 gi|320126050|gb|ADW13610.1| RNA methyltransferase, TrmA family [Geobacter sp. M18]
          Length = 438

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 144/373 (38%), Gaps = 35/373 (9%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            Y++QL +K       +        +         +   YR R +  +      +    F
Sbjct: 83  PYQEQLEQKGAIFADTLSRIGKVPRENVLPVAGSPDCYGYRSRVQVKVSQQKGAVNLGFF 142

Query: 64  DQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
              + E +         + L+N +  E  A +   P L   + Q+D  T    + I  L 
Sbjct: 143 RTASHEVVDFGAGCPLANDLLNRMASEFRALLPRLPQL-DCISQLDLSTGDEGEGIAILH 201

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV--------A 174
                 D   E     R+ L +        G   +    L R +  E L+          
Sbjct: 202 CKGSRPDQLVERLSASREQLPSVAGAFVRGGAKGE----LTRAFGIESLSYSIPAGLFPG 257

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFD 232
            R L  R     F+Q N   N+ ++  V     G+ G   +L+LYCGNGN S+ LA +  
Sbjct: 258 SRELRLRFGRGGFSQVNYRQNLALIGTVWE-WAGLTGKERVLDLYCGNGNISIPLAPYAA 316

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V  VE   PS+  A  N  AN V N       + +  + + + +E            +F
Sbjct: 317 EVFGVEGFAPSIVDAAANAEANGVGNASFQVSDAAQAVRRLHKRKE------------KF 364

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
             + +DPPR+G + A      A   I+Y+SC+P +L RDL++L S  + + R    D FP
Sbjct: 365 DLVVLDPPRAGAEAAAELAQLAPEKIIYVSCDPATLARDLAVLSSNGYQLTRSRPVDMFP 424

Query: 352 YTRHMECGVLLVR 364
            T H+E    L+R
Sbjct: 425 QTYHLESVTELIR 437


>gi|88808527|ref|ZP_01124037.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 7805]
 gi|88787515|gb|EAR18672.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 7805]
          Length = 466

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 147/393 (37%), Gaps = 46/393 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDGD 56
             TL       Q   K + L+  +L           L     E + YR RA   I     
Sbjct: 86  GCTLQHISVNAQNQWKQEHLKATLLRIGGVTTLAGPLISPEDESLGYRNRALIPIQRGEG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLF 105
            L    + + +   + +++       ++AL+  +   + L           EP LR    
Sbjct: 146 GLRLGYYRRGSHRIVNLNHCPVLDPRLDALIEPIKNDLALTDWPMDSDLRGEPGLRHLGL 205

Query: 106 QIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +I   T Q   ++V    H      L   W +   +L+      + +        +T   
Sbjct: 206 RIGVRTGQILISLVAATDHLPGLDRLTAEWMQRWPQLKGVTLNVQPKRSNTVIGEQTLCI 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG--IQGDLLELYCG 219
              D ++E        L  +    +F Q N      ++  +           ++++ YCG
Sbjct: 266 QGDDVIEENFC----GLSLQLGTTTFFQVNTTRAEQVVTMICDWIHASAPSANVIDAYCG 321

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L LA     V+ +EI + SV  A+ N   N +  V  +     E  + +      
Sbjct: 322 IGTIALPLAASGLNVVGLEINRDSVIQAQENAQRNGLEKVCFLDGDVAEHLEQLL----- 376

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS- 336
                        + + VDPPR GL  A + M+ A P   ++Y+SC+P +L RDL  L+ 
Sbjct: 377 ----------PHHQALVVDPPRKGLAPAVLQMILAIPPAFLIYLSCDPATLARDLQQLAG 426

Query: 337 --TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
               + IE++   D FP T H+EC V+++R  S
Sbjct: 427 PDGPYRIEQIKPVDFFPQTSHLECLVMMIRVSS 459


>gi|288803297|ref|ZP_06408730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
           melaninogenica D18]
 gi|288334117|gb|EFC72559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
           melaninogenica D18]
          Length = 474

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 81/402 (20%), Positives = 143/402 (35%), Gaps = 63/402 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WH------ 53
            YE+QL  K  ++   +       L  FR          YR + EF      W+      
Sbjct: 91  PYEEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCANKRWYTEEELK 150

Query: 54  ---------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----- 99
                    +G   +HI       +   I+       L N +   +        +     
Sbjct: 151 ALPKGVGLAEGAIGFHITGAFD--KVYPIEKCWLMDDLCNKIRKAIRDYAFSTGMKFYDI 208

Query: 100 --LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
                 L  I    S + + +V + +H   ++   E A  L   +  R  QI  +   + 
Sbjct: 209 RAQHGLLRDIMVRNSNTGEWMVLVQFHYD-EEGDDERAKALMQHIADRFPQISSLFYVDN 267

Query: 158 TK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
            K           +    D++ E +      L ++    SF Q N     H+        
Sbjct: 268 QKGNDTFNDLELTLFKGNDHIFETM----EDLRFKVGPKSFYQTNTEQAYHLYSVAREFA 323

Query: 207 KGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                +L+ +LY G G  +  +A+   +V+ +E    ++E A+ N   N ++N       
Sbjct: 324 NLTGNELVYDLYTGTGTIANFVAKKAQKVIGIEYVPEAIEDAKVNSEVNKIDNTLFYAGD 383

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
            K+              +D      R   I  DPPR+G+    V ++   +   I+Y+SC
Sbjct: 384 MKDILT-----------EDFISEHGRPDVIITDPPRAGMHPDVVNVILGASPKRIVYVSC 432

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +  RDL++L   + +  +   D FP T H+E  VLL ++
Sbjct: 433 NPATQARDLALLDADYKVSAVQPVDMFPQTPHVENVVLLEKR 474


>gi|160879502|ref|YP_001558470.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
 gi|160428168|gb|ABX41731.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
           ISDg]
          Length = 463

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 151/401 (37%), Gaps = 57/401 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEP--IHYRMRAEFHIW-- 52
             T     YE Q+  K D++++++             Q     P    YR + EF     
Sbjct: 80  GCTYQTIPYETQIKIKADQVKKLIDEVIATDNKEYEFQGIEGSPLEFGYRNKMEFSFGDE 139

Query: 53  ----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM--MATIRLEPLL 100
                     H     Y I+     K        + G +L  A    +     +  E  L
Sbjct: 140 FKDGPLALGLHKKGSFYDIVTTSDCKLVHEDYNRILGCVLSLAKEYNLNYYHKMSHEGYL 199

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-------------HARKY 147
           R  L +    T +   +++T     +L +   E   +LR++L             H    
Sbjct: 200 RHLLIRRAARTGEILVSLITTSQTNVLVNGEEEFLNKLRESLKNLSLEGSIVGILHTVND 259

Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
            +  + ++++T I   +D++ E +      L ++    SF Q N+     +   V     
Sbjct: 260 SLADVVQSDRTDILDGQDFIFEEVL----GLKFKISTFSFFQTNSLGAEVLYNCVRDFVG 315

Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             +  L+ +LY G G  + +LA    +V+ VEI   +V AAR N + N + N + +    
Sbjct: 316 ETKDKLIFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLTNCEFIAGDV 375

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
                          LK ID    +   I +DPPR G+    +  +       ++YISC 
Sbjct: 376 ---------------LKVIDTIEEKPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYISCK 420

Query: 325 PDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           P SL RDL +L    + +E++   D FP T H E   LL R
Sbjct: 421 PSSLARDLVVLQERGYWVEKVRCVDMFPCTVHTETVCLLNR 461


>gi|219667634|ref|YP_002458069.1| RNA methyltransferase, TrmA family [Desulfitobacterium hafniense
           DCB-2]
 gi|219537894|gb|ACL19633.1| RNA methyltransferase, TrmA family [Desulfitobacterium hafniense
           DCB-2]
          Length = 446

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 142/374 (37%), Gaps = 40/374 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y Q L  K   +   +       L+       +   EP  YR +A     H 
Sbjct: 94  GCQLQHLNYAQTLLWKKRWVEDALTRIGKIPLEKVKVHPTLGMDEPWRYRNKARL---HR 150

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT-SQ 113
           G+      + +++K  +     +  S  +N  + E  A +  +   +     ++ LT  +
Sbjct: 151 GEGNTLGYYQEKSKATVPFTDCLLISESMNRWVREAEAILGQQD--KNLFPDLNALTFRE 208

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           + Q    LI   L D    +    +    H+      +       +I   +++ ++ L  
Sbjct: 209 NSQGEGMLILDSLKDVRQADVWSEMGGGTHSV---WGINSSGEPERIAGQKEFTEDVLGA 265

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD 232
                 ++    +F Q N      +   VL   +     +  +LYCG G  +L LA    
Sbjct: 266 -----RFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEKVVWDLYCGIGTITLALAAKAK 320

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V  +E    +VE AR N   N VNNV+ +   +++  Q +                   
Sbjct: 321 KVWGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQQI---------------GDYP 365

Query: 293 KTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
             + +DPPR+G     +  +++  P  I+Y+SC+  +L RDL IL    + +  +   D 
Sbjct: 366 HIVVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDM 425

Query: 350 FPYTRHMECGVLLV 363
           FP+T  +E  +++ 
Sbjct: 426 FPWTVSVESIIVMT 439


>gi|294775567|ref|ZP_06741077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
           PC510]
 gi|294450617|gb|EFG19107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
           PC510]
          Length = 473

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 153/404 (37%), Gaps = 62/404 (15%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH-------- 50
            L    Y +Q+  K  ++   +              I   +   YR + EF         
Sbjct: 89  CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIIGSEKTEFYRNKLEFTFSNKRWLT 145

Query: 51  -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
                  + +D  +           + + I+       + N +   +             
Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205

Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-- 154
           LR++   L  +   TS + + +V L+  ++++++  +   +L   +  R  QI  +    
Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEESEMDLMKQLLAFVAERFPQITSLLYVV 264

Query: 155 -------ANKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
                   N  ++ +    D++ E +      L ++    SF Q N+G   + L  V   
Sbjct: 265 NNKCNDTINDLEVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             G+ G   + +LY G G  +  ++R   +V+ +E    ++E A+ N A N ++N     
Sbjct: 320 FAGLTGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
              K+              ++      R   I  DPPR+G+ D  +  +       I+Y+
Sbjct: 380 GDMKDILT-----------QEFINQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP +  RDLS+L   + +  +   D FP+T H+E  VLL ++
Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|91227846|ref|ZP_01262019.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01]
 gi|91188356|gb|EAS74652.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio alginolyticus 12G01]
          Length = 439

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD-- 56
              L    Y+QQL  K   LRQ+M  F   ++++      +   YR RA   ++ D    
Sbjct: 90  GCDLQHLDYDQQLTYKQQTLRQLMRKFSGSDIELDAPLLGDSQAYRRRARVSLFVDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L+     +Q+K+  ++      +  +N L+ E+ + ++       +L  ++ +   +  
Sbjct: 150 QLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSALKAFKK-PEQLGHVELVLGDNGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I TL +   L  +  +    L          + L+    +  +        + + V   
Sbjct: 209 CI-TLRHLSALTTSETQSLTELAKR---HGASLYLMPSTEQLDLIEGDMPFYQEVGVKIP 264

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
                   N+F Q N G+N  M++  +      + D +L+L+CG GNFSL +A+    V+
Sbjct: 265 -----FAPNNFIQVNQGVNQQMVKQAVEWLDPQKSDRVLDLFCGLGNFSLPVAKLAKHVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     VE A  N + N +NN +    + ++              +     + RF  +
Sbjct: 320 GVEGVAEMVEKATNNASLNQINNAQFYHANLEQ------------DFEGQAWAAERFDKV 367

Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
            +DP R+G       + +     ++Y+SCNP +L RD   L    + + +L + D FP+T
Sbjct: 368 LLDPARAGASGIIDQVSELGAQRVVYVSCNPATLARDSQSLIEQGYQLTKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 428 SHLESMALFEK 438


>gi|160946481|ref|ZP_02093690.1| hypothetical protein PEPMIC_00445 [Parvimonas micra ATCC 33270]
 gi|158447597|gb|EDP24592.1| hypothetical protein PEPMIC_00445 [Parvimonas micra ATCC 33270]
          Length = 450

 Score =  242 bits (617), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 154/390 (39%), Gaps = 45/390 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAE--FHIWHDGDD 57
            G       YE +L  K  +++++         +IF S     YR + E  F   +    
Sbjct: 80  GGCSYQSVPYEYELKLKQRQIKELFEDVYSEEPEIFESPLKTAYRNKMEYTFADMYKDSP 139

Query: 58  LYHIMFDQ-------QTKE--RMRIDYFMPGSLLIN---ALMIEMMATIRLEPLLRAKLF 105
           +   M  +        TKE   + ID+ +  + +I+      +  +     E LLR  + 
Sbjct: 140 IMLGMHKKNRFYEVIDTKECNLVHIDFEIIRNAVIDFVREKNLPFVKKRTHEGLLRHLII 199

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRANKTK 159
           +    T +    IVT         ++ +  + L+        +H     +       K  
Sbjct: 200 RYALTTGEIMVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIVHTENDSLADAVVPEKIN 259

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           I   ++Y+ E++      L ++    SF QPN    +++    +     I+  ++ +LY 
Sbjct: 260 IIFGKEYITEKI----FDLEFKVTPFSFFQPNVFGAINLYSKAIELCGDIENKVVFDLYS 315

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G    ++AR    V  +EI + +VE+A  +   N + N   +                
Sbjct: 316 GTGTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDV------------ 363

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-IL 335
              L++I+        I VDPPR G++   +  + +     I+YISCNP +  RD+  +L
Sbjct: 364 ---LEEIENRKEMVDVIIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQILL 420

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + +  L +F+QFP T H E   LL R+
Sbjct: 421 QNGYKLITLKIFNQFPRTVHCEAVALLERR 450


>gi|257063252|ref|YP_003142924.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
           heliotrinireducens DSM 20476]
 gi|256790905|gb|ACV21575.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
           heliotrinireducens DSM 20476]
          Length = 401

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 78/398 (19%), Positives = 139/398 (34%), Gaps = 51/398 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHI------ 51
             + L   Y QQLA K   + ++              +    P+HYR +           
Sbjct: 17  GCSWLRVPYGQQLARKQQHVDELFADLIDDGTQCLPILGMKVPLHYRNKVVSPFVGIYDK 76

Query: 52  WHDGDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLL 100
                 +   M+++ T   +     +  +            L+    IE     R E  L
Sbjct: 77  RTRRRRILCGMYERGTHWVIDSSECLIENAQAKAIILTIRDLMPKFRIEPYDEDRDEGFL 136

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R    ++ +    S + +VTL+         ++    L          +Q +  + KT +
Sbjct: 137 RHAQVRVGH---NSGEVMVTLVTRTEQFPTAKKFVRALVSRHPEITTVVQNVN-SRKTNV 192

Query: 161 CLD----RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLE 215
            +     + Y    +      L +R    SF Q N+     +    +  A       +++
Sbjct: 193 IMGDKERKLYGPGFILDTLCGLSFRISSTSFYQVNSTQTEVLYSTAIRMAKLTGTETVMD 252

Query: 216 LYCGNGNFSLVLARH------FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            YCG G   LV  R         +++ VE    +V  AR N   N ++N + V   +  +
Sbjct: 253 AYCGTGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFVAADAGAY 312

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDS 327
            +            +          +F+DPPR+G     +    +     I+YISCNP +
Sbjct: 313 MR------------EQAEQGRSVDVLFMDPPRAGSTPDFLKAACSISPKRIVYISCNPTT 360

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             RD   L    + I+ L   D FP+T H+EC + + R
Sbjct: 361 QARDAKYLIEHGYRIDVLQPVDMFPHTDHVECVISMSR 398


>gi|82545084|ref|YP_409031.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii Sb227]
 gi|91207811|sp|Q31XK5|RUMA_SHIBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|81246495|gb|ABB67203.1| putative enzyme [Shigella boydii Sb227]
 gi|332091873|gb|EGI96951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii
           3594-74]
          Length = 433

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVASALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|331674278|ref|ZP_08375038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA280]
 gi|331068372|gb|EGI39767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA280]
          Length = 433

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 30/357 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70
           Q   K   L ++M   +    ++    P  YR RA   + +      L        + + 
Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+ ++ A +     +R  L  ++ + + S + ++ L +   L  A
Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAIRH-LGHVELVQATSGKLMI-LRHTAPLSSA 214

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            RE   R     H+    + L   +   +         E        L        F Q 
Sbjct: 215 DREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE     VE  + 
Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N + NV     + +E             +         F  + +DP R+G      
Sbjct: 327 NARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E  VL  R
Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431


>gi|323971613|gb|EGB66844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA007]
          Length = 433

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +      +  + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|86607994|ref|YP_476756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556536|gb|ABD01493.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 464

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 137/382 (35%), Gaps = 46/382 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIM 62
            Y QQLA K   LR  +          P   +   +P+ YR +  + +   +G  L    
Sbjct: 102 SYAQQLATKQQILRDALERIGGLTLPQPVPILGSQQPLRYRNKVTYPMAKPEGQPLRMGY 161

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLT 111
           + + +   + ++        ++  + E+   ++               LR    +I   T
Sbjct: 162 YQRGSHRLVNLNQCPVQDERLDVFLREIKRDLQETGWSVYDESRHQGHLRHLGLRIGRRT 221

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYV 167
            +    +V+        ++W E  ++    L                  +T++   R  +
Sbjct: 222 REVLLTLVSCSRRLPHLESWAERWMQRYPDLVGVCLNLNSARTNAIFGPETEVIAGRGSL 281

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLV 226
            E                SF Q N         W+        +  +L+ YCG G  +L+
Sbjct: 282 REEFA----GFSLWIDSTSFFQVNTEQAEAFFTWIADQLNLRGEETILDAYCGIGTLTLL 337

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA+   R + VE    +V  ARYN   N + + +  + + ++    +             
Sbjct: 338 LAQRAKRAMGVEALPEAVAQARYNAQFNGIASAQFFQGTVEQVLPTLP------------ 385

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL--STTHTIE 342
                   + +DPPR G D   +  ++    P I+YISC+P +L RDL IL    ++ + 
Sbjct: 386 ----PADIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPATLARDLQILLAEGSYRLT 441

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           +    D FP T H+E    L R
Sbjct: 442 QWRAADFFPQTGHVEGVAFLER 463


>gi|295692497|ref|YP_003601107.1| RNA methyltransferase [Lactobacillus crispatus ST1]
 gi|295030603|emb|CBL50082.1| RNA methyltransferase [Lactobacillus crispatus ST1]
          Length = 462

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 146/386 (37%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L+   Y++QL  K + + + +  +   N         I   +P HYR +A++ I  D   
Sbjct: 91  LVHLSYDKQLEFKKNNMLESLRKYHPRNYNKYKVKNTIAAPDPWHYRNKAQYQIEKDHGQ 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L   +F   +   + +      S            LI  L + +    R  P ++  + +
Sbjct: 151 LKLGLFAPNSHRLIDLPKMPTQSEDTQKTERKIKVLIEKLHVPVANYRRHLPGIKTVVVR 210

Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163
               T +    ++T+ +  + L    +E      +                 NKT+  L 
Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           ++ + E +      L       +F Q N    +++    L          L++ Y G G 
Sbjct: 271 KNQITEEILGKKFAL----SPRAFFQLNPVQTINLYSEALKYLDLTPDQTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S ++             L
Sbjct: 327 LGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV------------L 374

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL  + +  +        +YISCNP +L +DL +LS  + 
Sbjct: 375 PELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQDLVLLSEAYD 434

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLVLRK 460


>gi|222034476|emb|CAP77218.1| 23S rRNA [Escherichia coli LF82]
 gi|312947312|gb|ADR28139.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 433

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQSMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   +L    H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADRE---KLECFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|265753522|ref|ZP_06088877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_33FAA]
 gi|263235236|gb|EEZ20760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_33FAA]
          Length = 473

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 155/404 (38%), Gaps = 62/404 (15%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50
            L    Y +Q+  K  ++   +      ++P +           YR + EF         
Sbjct: 89  CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNKRWLT 145

Query: 51  -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
                  + +D  +           + + ID       + N +   +             
Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205

Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-----L 151
           LR++   L  +   TS + + +V L+  +++++   +   RL   +  R  QI      +
Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEEGELDLMKRLLTFVAERFPQITSLLYVV 264

Query: 152 IGRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
             + N T       +    +++ E +      L ++    SF Q N+G   + L  V   
Sbjct: 265 NNKCNDTINDLDVMVFKGNNHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             G+ G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N A N ++N     
Sbjct: 320 FAGLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
              K+              ++      R   I  DPPR+G+ D  +  +       I+Y+
Sbjct: 380 GDMKDILT-----------QEFISQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP +  RDLS+L   + +  +   D FP+T H+E  VLL ++
Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|194439665|ref|ZP_03071736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           101-1]
 gi|253772364|ref|YP_003035195.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162711|ref|YP_003045819.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli B str.
           REL606]
 gi|297518509|ref|ZP_06936895.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli OP50]
 gi|300931243|ref|ZP_07146583.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           187-1]
 gi|194421412|gb|EDX37428.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           101-1]
 gi|242378332|emb|CAQ33109.1| 23S rRNA m[5]U1939 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323408|gb|ACT28010.1| RNA methyltransferase, TrmA family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974612|gb|ACT40283.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253978777|gb|ACT44447.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli BL21(DE3)]
 gi|300460897|gb|EFK24390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           187-1]
 gi|323960697|gb|EGB56321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H489]
          Length = 433

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +      +  + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALELLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|225851134|ref|YP_002731368.1| 23S rRNA (uracil-5-)-methyltransferase [Persephonella marina EX-H1]
 gi|225645087|gb|ACO03273.1| 23S rRNA (uracil-5-)-methyltransferase [Persephonella marina EX-H1]
          Length = 421

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 44/377 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSE-PIHYRMRAEFHIWHDGD 56
                   YE+Q+  K + L + +      N+    +I+ S+ P +YR R +  I  +  
Sbjct: 73  GCDYQHITYEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYRNRTQLKIRGEKI 132

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ---IDYLTSQ 113
             Y     +++++ + ID  +     IN ++  +        +L+  +FQ   +   +S 
Sbjct: 133 GFYM----RESRQIINIDSCLLLKEDINGMISGVRE------ILKFLIFQPEQVHIYSSS 182

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN---KTKICLDRDYVDER 170
             +A+V  +Y + +   +      LR  L  +     +  R +   K  + L   Y+ E 
Sbjct: 183 DGEALVKFVYQKRVR-RFPLGLKHLRSFLSEKLKGAGIYHRKDDLLKRDVLLGESYIYEE 241

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
                  + +R   +SF Q N     ++L+ VL    G     ++L+CG G  +L  AR+
Sbjct: 242 YG----GIKFRVSMDSFFQVNVYQVENLLDAVLQ-NIGDHEKAVDLFCGVGTLTLPSARY 296

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              +  +E    +V  A +N   N + N K  RM +             NR     I   
Sbjct: 297 IKEIYGIESNPYAVNDANHNRKLNRIKNAKFFRMDA-------------NRSGGF-IAEL 342

Query: 291 RFKTIFVDPPRSGLDDATVGM---VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
           +   + +DPPR+G+ D  V       +   I+Y+SCNP +L RDL  L   +++E++ + 
Sbjct: 343 KPDLVIIDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYLKERYSVEKVYMI 402

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP T H+E  V+L +
Sbjct: 403 DMFPQTYHIESVVVLQK 419


>gi|26249186|ref|NP_755226.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           CFT073]
 gi|110642926|ref|YP_670656.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 536]
 gi|191171273|ref|ZP_03032823.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli F11]
 gi|218690908|ref|YP_002399120.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli ED1a]
 gi|227888323|ref|ZP_04006128.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 83972]
 gi|300976049|ref|ZP_07173264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           45-1]
 gi|300976310|ref|ZP_07173374.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           200-1]
 gi|301049458|ref|ZP_07196416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           185-1]
 gi|306812335|ref|ZP_07446533.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli NC101]
 gi|331658896|ref|ZP_08359838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA206]
 gi|34222885|sp|Q8FEG6|RUMA_ECOL6 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|123147767|sp|Q0TE74|RUMA_ECOL5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|26109593|gb|AAN81796.1|AE016765_198 23S rRNA (Uracil-5-)-methyltransferase rumA [Escherichia coli
           CFT073]
 gi|110344518|gb|ABG70755.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 536]
 gi|190908573|gb|EDV68162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli F11]
 gi|218428472|emb|CAR09398.2| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli ED1a]
 gi|227834592|gb|EEJ45058.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli 83972]
 gi|281179786|dbj|BAI56116.1| putative RNA methyltransferase [Escherichia coli SE15]
 gi|300298689|gb|EFJ55074.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           185-1]
 gi|300308552|gb|EFJ63072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           200-1]
 gi|300410146|gb|EFJ93684.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           45-1]
 gi|305854373|gb|EFM54811.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli NC101]
 gi|307554757|gb|ADN47532.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli ABU
           83972]
 gi|315293742|gb|EFU53094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           153-1]
 gi|315298722|gb|EFU57976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           16-3]
 gi|320194924|gb|EFW69553.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           WV_060327]
 gi|324005669|gb|EGB74888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           57-2]
 gi|324015533|gb|EGB84752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           60-1]
 gi|331053478|gb|EGI25507.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA206]
          Length = 433

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   +L    H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADRE---KLECFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|254291652|ref|ZP_04962440.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           AM-19226]
 gi|150422424|gb|EDN14383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           AM-19226]
          Length = 440

 Score =  241 bits (616), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 154/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + + +       +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|229521280|ref|ZP_04410700.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TM
           11079-80]
 gi|229341812|gb|EEO06814.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TM
           11079-80]
          Length = 440

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + +         +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|227500125|ref|ZP_03930196.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC
           35098]
 gi|227217840|gb|EEI83137.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC
           35098]
          Length = 505

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 159/375 (42%), Gaps = 38/375 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
             T++   Y+QQL  K + ++  +       +  ++I  S  ++YR +    +  +GD  
Sbjct: 76  GCTIMDINYQQQLKLKTNLIKNAIKKTCKIDLDEIEIIPSRQLNYRNKIRLQVDENGDLA 135

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           Y+    + + + + I+  +  +  I   + ++    +       K+ +   + S + + I
Sbjct: 136 YN---KKASNDLVAIEDCLLANEHIRKKLPQIQKISQDINKKFGKIIKEISIRS-NGEKI 191

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +  IY +            L + L  +     +     K+ + +  +Y+  R+    +  
Sbjct: 192 LLNIYTK--------DEKTLYNYLKDKNKDFNINLTNKKSTLTIGDNYLIHRV----KDK 239

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
            ++  ++ F Q N     ++     +        LL+L+CG+G  S+ LA   D ++ +E
Sbjct: 240 KFKISKDDFFQVNDSQIENLYSEA-SQYLEKDKKLLDLFCGSGISSMALAN--DHIVGIE 296

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I K +++ A  N  AN + + K +  ++    Q               I   +  T+ +D
Sbjct: 297 INKSAIKDAIENAEANGLKDYKFIAKNANYIDQKF-------------IKKEKIGTVTID 343

Query: 299 PPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355
           PPR+GLD   +  +      +I+YISCNP +L RD+   +   + ++R+   D F  + H
Sbjct: 344 PPRAGLDKEIIKTLAKTQIKNIIYISCNPQTLARDIKRFMDRGYELKRIKAVDMFAQSMH 403

Query: 356 MECGVLLVRKPSGWH 370
           +E   LL +  +  H
Sbjct: 404 VETVALLSKLNTEHH 418


>gi|153826889|ref|ZP_01979556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-2]
 gi|149739252|gb|EDM53514.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           MZO-2]
          Length = 440

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 152/373 (40%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + +         +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMPEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N  M+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQQMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|237709870|ref|ZP_04540351.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA]
 gi|229455963|gb|EEO61684.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA]
          Length = 473

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 154/404 (38%), Gaps = 62/404 (15%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50
            L    Y +Q+  K  ++   +      ++P +           YR + EF         
Sbjct: 89  CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNKRWLT 145

Query: 51  -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
                  + +D  +           + + ID       + N +   +             
Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205

Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-----L 151
           LR++   L  +   TS + + +V L+  +++++   +   RL   +  R  QI      +
Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEEGELDLMKRLLTFVAERFPQITSLLYVV 264

Query: 152 IGRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
             + N T       +    D++ E +      L ++    SF Q N+G   + L  V   
Sbjct: 265 NNKCNDTINDLDVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
              + G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N A N ++N     
Sbjct: 320 FARLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
              K+              ++      R   I  DPPR+G+ D  +  +       I+Y+
Sbjct: 380 GDMKDILT-----------QEFISQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP +  RDLS+L   + +  +   D FP+T H+E  VLL ++
Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|297581076|ref|ZP_06943001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae RC385]
 gi|297534902|gb|EFH73738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae RC385]
          Length = 440

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + +         +NAL+ ++ A +  +     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-KWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMPEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|218706281|ref|YP_002413800.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           UMN026]
 gi|293406277|ref|ZP_06650203.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli
           FVEC1412]
 gi|298382014|ref|ZP_06991611.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300898161|ref|ZP_07116523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           198-1]
 gi|218433378|emb|CAR14280.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli UMN026]
 gi|291426283|gb|EFE99315.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli
           FVEC1412]
 gi|298277154|gb|EFI18670.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300358136|gb|EFJ74006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           198-1]
          Length = 433

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 30/357 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70
           Q   K   L ++M   +    ++    P  YR RA   + +      L        + + 
Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+ ++ A +     +R  L  ++ + + S   ++ L +   L  A
Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSSA 214

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            RE   R     H+    + L   +   +         E        L        F Q 
Sbjct: 215 DREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE     VE  + 
Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N ++NV     + +E             +         F  + +DP R+G      
Sbjct: 327 NARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E  VL  R
Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431


>gi|282882595|ref|ZP_06291214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus
           lacrimalis 315-B]
 gi|281297570|gb|EFA90047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus
           lacrimalis 315-B]
          Length = 518

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 158/373 (42%), Gaps = 35/373 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
               L  +YE+ L  K   +   +      ++++ +     +  +YR   +F +     +
Sbjct: 78  GCDFLNYKYEKSLDWKKQSVNNKLQRISELDIKVSKVNSSEKTFNYRNNMQFQV----KN 133

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
               ++ + +KE + I++ +  S   N  +  +     LE     K+  +   T+  DQ 
Sbjct: 134 GKIGLYMKNSKEIVPIEHCLMQSTNANKTLKILTKFKNLE-----KIKTLGIRTNYKDQV 188

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL---IGRANKTKICLDRDYVDERLTVA 174
           ++ +     ++         +   + +    I         ++  +   ++Y++E++   
Sbjct: 189 MLIISSKEKINKLNLILGDLIDANVVSIYENINNRKNAHYGDEFNLLYGQEYLEEKI--- 245

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              L Y+    SF Q N     ++    +   +  + + + +LY G G  SL +A    +
Sbjct: 246 -NKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGVGTLSLEIASRKAQ 304

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
            L VEI + ++E AR N   N +   + +   S+E  + ++ +              +  
Sbjct: 305 TLGVEIVEEAIEDARINAQKNKLQ-ARFICGKSEEILEKIQTD-----------EKIKMD 352

Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            I VDPPR G+D   V  +    Y  I+YISCNP +L RDL IL   + +E++ +FD FP
Sbjct: 353 KILVDPPRKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEKYKVEKVEIFDLFP 412

Query: 352 YTRHMECGVLLVR 364
           YT H+E   LL +
Sbjct: 413 YTSHVEVITLLSK 425


>gi|227877151|ref|ZP_03995225.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256848986|ref|ZP_05554420.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|262047127|ref|ZP_06020086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus MV-3A-US]
 gi|227863205|gb|EEJ70650.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus crispatus JV-V01]
 gi|256714525|gb|EEU29512.1| RNA methyltransferase [Lactobacillus crispatus MV-1A-US]
 gi|260572704|gb|EEX29265.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus MV-3A-US]
          Length = 462

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 145/386 (37%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y++QL  K + + + +  +   N         I   +P HYR +A++ I  D   
Sbjct: 91  LAHLSYDKQLEFKKNNMLESLRKYHPRNYNKYKVKNTIAAPDPWHYRNKAQYQIEKDHGQ 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L   +F   +   + +      S            LI  L + +    R  P ++  + +
Sbjct: 151 LKLGLFAPNSHRLIDLPKMPTQSEDTQKTERKIKVLIEKLHVPVANYRRHLPGIKTVVVR 210

Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163
               T +    ++T+ +  + L    +E      +                 NKT+  L 
Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           ++ + E +      L       +F Q N    +++    L          L++ Y G G 
Sbjct: 271 KNQITEEILGKKFAL----SPRAFFQLNPVQTINLYSEALKYLDLTPDQTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S ++             L
Sbjct: 327 LGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV------------L 374

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL  + +  +        +YISCNP +L +DL +LS  + 
Sbjct: 375 PELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQDLVLLSEAYD 434

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLVLRK 460


>gi|311693681|gb|ADP96554.1| 23S rRNA 5-methyluridine methyltransferase [marine bacterium HP15]
          Length = 436

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 151/385 (39%), Gaps = 39/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG- 55
             +L     + Q+  K + LR+    F     +     +   E + YR +A   + +   
Sbjct: 73  GCSLQHMSGDAQIEFKENTLREHFAHFGGIEPEEWIAPLRSEESLGYRRKARLGVRYVKA 132

Query: 56  -DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            + +     +++      ID  +     I   ++ +   +       +++ Q++      
Sbjct: 133 RESVLVGFREKRNSFLTDIDRCVVLDPRIGERILPLRNMLHDLEAY-SRIPQVEIACGDD 191

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL-----DRDYVDE 169
              +V     R +D+       +L     A +  I L  +   T   +      RD  +E
Sbjct: 192 VAVMV----FRNMDELSVGDREKLIAFGQAHELHIYLQPKGPDTVHRIWPESAGRD--EE 245

Query: 170 RLT--VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           RL+  +    L  R     FTQ NAGIN  M+   +       G+ +L+L+CG GNF+L 
Sbjct: 246 RLSYRLDEFDLTMRFHPMDFTQVNAGINRAMVHRAVEWLDVQPGERVLDLFCGLGNFTLP 305

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDI 285
           LA    +V+ VE  +  V   R N   N ++NV         +FT               
Sbjct: 306 LATRGGQVVGVEGDETMVVRGRENAELNGLDNVAFHGADLHGDFT-------------GQ 352

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIER 343
                 F  I +DPPRSG ++    +       I+Y+SCNP +L RD  ++    + + R
Sbjct: 353 SWAKEGFDKILIDPPRSGAEEICKYLTAFGAQKIVYVSCNPATLARDAGVMVRNGYRLVR 412

Query: 344 LALFDQFPYTRHMECGVLLVRKPSG 368
             + D FP+T H+E   L   K SG
Sbjct: 413 AGVMDMFPHTTHVESIALFE-KDSG 436


>gi|282900616|ref|ZP_06308558.1| 23S rRNA methyltransferase/RumA [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194416|gb|EFA69371.1| 23S rRNA methyltransferase/RumA [Cylindrospermopsis raciborskii
           CS-505]
          Length = 455

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 138/390 (35%), Gaps = 47/390 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
                   YE QL  K +++ Q +              +    P+ YR +A + I     
Sbjct: 86  GCQWQHINYEYQLQVKQNQVIQALERIGNFVNPPVAPVLTTKSPLGYRNKATYPIKTSST 145

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104
             +    + + +   + ++        +N L+ E+   I+ +             +R   
Sbjct: 146 GQVQAGYYQKGSHLLINLNQCPVQDPRLNPLLTEIKQDIQKQGWSVYDENRHQGEIRHLG 205

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +I   T +    +V         +     W     +L                   T  
Sbjct: 206 LRIGRYTGEILLTLVVKNGQLPGIETQAQQWLHRYPQLVGICLNHNGDRTNAIFGKVTTC 265

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
                Y+ E+       L ++   ++F Q        +LE V+ +   +QGD  L++ YC
Sbjct: 266 IAGVPYLREQFA----GLEFKVRPDTFFQVYTETAEALLE-VIQSQLNLQGDEILVDAYC 320

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +L LA+   + + +EI   +VE A YN   N + N K    + ++    +     
Sbjct: 321 GIGTLTLPLAKQARQTIGLEIQPAAVEQAIYNAQHNGITNAKFQIGAVEDILPKL----- 375

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                           + +DPPR G +   +  +       I YISC   +L RDLS+L 
Sbjct: 376 ----------DTLPDIVLLDPPRKGCEPIVLQSLLKLKPKKIAYISCKASTLARDLSLLC 425

Query: 337 TT--HTIERLALFDQFPYTRHMECGVLLVR 364
            +  + ++++   D FP T H+E    L R
Sbjct: 426 ASGEYKLKKVQPADFFPQTPHVETVAFLER 455


>gi|153831307|ref|ZP_01983974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           623-39]
 gi|148873209|gb|EDL71344.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           623-39]
          Length = 440

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 154/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + + +       +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|327484944|gb|AEA79351.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Vibrio cholerae
           LMA3894-4]
          Length = 440

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + + +       +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMPEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N  M+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQQMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|331648510|ref|ZP_08349598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M605]
 gi|330908811|gb|EGH37325.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Escherichia coli
           AA86]
 gi|331042257|gb|EGI14399.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M605]
          Length = 433

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   +L    H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADRE---KLECFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|256842705|ref|ZP_05548193.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 125-2-CHN]
 gi|293380255|ref|ZP_06626333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 214-1]
 gi|256614125|gb|EEU19326.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 125-2-CHN]
 gi|290923164|gb|EFE00089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           crispatus 214-1]
          Length = 462

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 146/386 (37%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L+   Y++QL  K + + + +  +   N         I   +P HYR +A++ I  D   
Sbjct: 91  LVHLSYDKQLEFKKNNMLESLRKYHPRNYNKYKVKNTIAAPDPWHYRNKAQYQIEKDHGQ 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           L   +F   +   + +      S            LI  L + +    R  P ++  + +
Sbjct: 151 LKLGLFAPNSHRLIDLPKMPTQSEDTQKTERKIKVLIEKLHVPVANYRRHLPGIKTVVVR 210

Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163
               T +    ++T+ +  + L    +E      +                 NKT+  L 
Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           ++ + E +      L       +F Q N    +++    L          L++ Y G G 
Sbjct: 271 KNQITEEILGKKFAL----SPRAFFQLNPVQTINLYSEALKYLDLTPDQTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S ++             L
Sbjct: 327 LGILAADRVKQVVGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKI------------L 374

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL  + +  +        +YISCNP +L +DL +LS  + 
Sbjct: 375 PELQNSGVAINALIVDPPRTGLAKSLIKTLLRVKPETFVYISCNPSTLAQDLVLLSEAYD 434

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLVLRK 460


>gi|149192073|ref|ZP_01870298.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1]
 gi|148834098|gb|EDL51110.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio shilonii AK1]
          Length = 437

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 157/372 (42%), Gaps = 33/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58
                  + +QQ+  K   L Q+M      ++ +  S   E + YR RA   I  D    
Sbjct: 90  GCNQQHVERQQQIENKQVALSQLMNKLAGQSVPLASSITGEGLGYRRRARLSIHLDKQRN 149

Query: 59  YHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
             + F + Q+   + ID+    +  +NAL+  +          ++ L  ++ +   +   
Sbjct: 150 LVMGFRRKQSNHIVEIDHCPVLNAQLNALIPPLRDIFAGFKQQQS-LGHLELVMGDNGPV 208

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGR 176
           +V     R +         RL D   ++   + L+  + + ++    + Y  E     G 
Sbjct: 209 VVV----RHIKPLTNHDQKRLVDFADSQALTLYLMPESGQLQLITGEQPYYSEV----GV 260

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
            L +  +   F Q N  IN  M+   L        D +L+L+CG GNF+L LA+   RV+
Sbjct: 261 ELPF--LPTHFIQVNREINSKMVAQALEWLAPESSDNVLDLFCGLGNFTLPLAKLCQRVV 318

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE  +  V+ A+ N A NH+ NV+  + + ++             L ++     +F  I
Sbjct: 319 GVEGIQDMVDWAQQNAALNHLTNVEFYQANLEQ------------DLSEMSWAKQQFDKI 366

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DP R+G     +  V A     +LY+SCNP +L RD   L    + + RL + D FP+
Sbjct: 367 LLDPARAGAS-GVIDQVSALGATRVLYVSCNPATLARDTQSLIEQGYKLVRLGMMDMFPH 425

Query: 353 TRHMECGVLLVR 364
           T H+E   L  +
Sbjct: 426 TSHLESMALFEK 437


>gi|82778167|ref|YP_404516.1| 23S rRNA 5-methyluridine methyltransferase [Shigella dysenteriae
           Sd197]
 gi|309786100|ref|ZP_07680729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae
           1617]
 gi|91207812|sp|Q32CD0|RUMA_SHIDS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|81242315|gb|ABB63025.1| putative enzyme [Shigella dysenteriae Sd197]
 gi|308926211|gb|EFP71689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae
           1617]
          Length = 433

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEIFETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|317501056|ref|ZP_07959262.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897443|gb|EFV19508.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 460

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 153/392 (39%), Gaps = 48/392 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP--IHYRMRAEFHI---WH 53
            G +     YE+Q+  K  ++R++M          +  ++ P    YR + EF     + 
Sbjct: 84  GGCMYQTMPYEEQMKMKEGQIRRIMDEAVDGEYLFEGVKASPKEFAYRNKMEFSFGDEYK 143

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRA 102
           DG     +     T + +           +N +++ ++   +               LR 
Sbjct: 144 DGPLSLGLHKKGSTYDVLTASDCKLVHKDMNKILVCVLEYFKERKVSYYKKMQHVGYLRH 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRAN 156
            L +    T +    +VT            E  ++L         LH     +  + +++
Sbjct: 204 LLLRRGDTTGEILVNLVTTTQEEHDLSELTEQLLQLPLEGKIVGILHILNDSLSDVVKSD 263

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215
           +T++   +D+  E+L      L ++    SF QPN      + E V      I    + +
Sbjct: 264 ETRVLYGQDFFYEKLL----GLQFKITPFSFFQPNTKGAEVLYETVREYIGDIHDLTVFD 319

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           L+ G G  S VLA    +V+ VEI + +VEAA+ N   N ++N + +     E    ++ 
Sbjct: 320 LFSGTGTISQVLAPVAKKVIGVEIVEEAVEAAKENAERNGLSNCEFIAGDVFEVLDDIKE 379

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
                          +   I +DPPR G+    +  +       I+YISC   SL RDL 
Sbjct: 380 ---------------KPDVIILDPPRDGIHPKALPKILDYGVDRIVYISCKMTSLARDLE 424

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           ++    +T+E++   DQF  T H+E   L+ R
Sbjct: 425 LIQQRGYTVEKMTAVDQFCETVHVETVCLMSR 456


>gi|268611139|ref|ZP_06144866.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1]
          Length = 416

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 140/401 (34%), Gaps = 51/401 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHI--WHD 54
               +   YE +   K + + +             L IF S+    YR +A++    +  
Sbjct: 32  GCVFMHMSYEAECRIKSNIVTEAFARIGHLVPKEILPIFSSDSIEGYRNKAQYPYADYKY 91

Query: 55  GDD---LYHIMFDQQTKERMRIDYFMPGS----LLINALMIEM----------MATIRLE 97
            D+        +  ++   + + Y +        ++     E+                 
Sbjct: 92  TDNTVFPKFGFYAPRSHRLVPVTYCVLQPAAFGDILRHCEEELGTADFNAITPYNEESGN 151

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR--- 154
            +LR    +  + + +     VT   +  +     +    L    H  K  +  +     
Sbjct: 152 GVLRHLYIRQGFHSKEIMVCFVTAKDNNHIRKQLTDLGNTLIADTHEIKSVMLNVNPQKT 211

Query: 155 ----ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                 KT   + +D + + L     +L       SF Q N      +           +
Sbjct: 212 NVILGKKTVCLIGKDTIADTLCGVPVSL----SPQSFYQVNTAQAEKLFAEAKRLAAPKK 267

Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +LL +LYCG G   L +A    +V+ VE+   ++E A+ N     ++N +     + E 
Sbjct: 268 DELLLDLYCGAGAIGLSMADTVGKVIGVEVVPQAIEDAKANAKRAGISNAEFFAGDAGEI 327

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                 E              +   I +DPPR G D  T+      A   I+ ISCNP +
Sbjct: 328 AAKFAAE------------GRKPDIIVLDPPRKGCDTLTLDACLEMAPSRIVMISCNPST 375

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
             RD + L     T++ L   D FP T+H+EC VL+ R+ S
Sbjct: 376 AARDAAYLCENGFTLDVLRPADFFPRTKHVECVVLMSRQKS 416


>gi|237725460|ref|ZP_04555941.1| RNA methyltransferase [Bacteroides sp. D4]
 gi|229436147|gb|EEO46224.1| RNA methyltransferase [Bacteroides dorei 5_1_36/D4]
          Length = 473

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 153/404 (37%), Gaps = 62/404 (15%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50
            L    Y +Q+  K  ++   +      ++P +           YR + EF         
Sbjct: 89  CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNKRWLT 145

Query: 51  -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
                  + +D  +           + + ID       + N +   +             
Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205

Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-----L 151
           LR++   L  +   TS + + +V L+  +++++   +   RL   +     QI      +
Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEEGELDLMKRLLTFVAEHFPQITSLLYVV 264

Query: 152 IGRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
             + N T       +    D++ E +      L ++    SF Q N+G   + L  V   
Sbjct: 265 NNKCNDTINDLDVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
              + G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N A N ++N     
Sbjct: 320 FARLTGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
              K+              ++      R   I  DPPR+G+ D  +  +       I+Y+
Sbjct: 380 GDMKDILT-----------QEFISQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP +  RDLS+L   + +  +   D FP+T H+E  VLL ++
Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|182419838|ref|ZP_02951078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
           5521]
 gi|237666723|ref|ZP_04526708.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376386|gb|EDT73968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
           5521]
 gi|237657922|gb|EEP55477.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 451

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 143/395 (36%), Gaps = 53/395 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             +     YE+QL    + ++ +     VP  +            YR + EF    +   
Sbjct: 79  GCSSQSLPYEKQLEFLSEEVKALFDEAGVPTGEYLGIQGSPTQFEYRNKMEFTFGDEAKG 138

Query: 58  L---YHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAK 103
                 +    ++   + +D  M        +            +     ++ E  LR  
Sbjct: 139 APLGVGMHMIGKSFGIVTVDQCMLIDEDYRKVIRLTVDYFREQNLPYYRIMKAEGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154
           + +    T    + +V L+    +D    +            RL   +H           
Sbjct: 199 VIRKAKNTG---ELLVNLVTTTQIDFDLSDYVKLLRNESYDGRLVSIIHTENDSKSDAVI 255

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
             K  +   +DY+ E L      L +     SF Q N      +   V       +  ++
Sbjct: 256 PEKVNVLYGKDYIREELL----GLEFNISPFSFFQTNTKGAEQLYSMVRDFMGDSENKVV 311

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G    ++A    +V+ +E+ + +VEAA+ N   N + N + +     E  + +
Sbjct: 312 FDLYCGTGTIGQIVAPKAKKVIGIELIEEAVEAAKENAKLNGLENCEFLAGDVAEIIKNV 371

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
           +                +   I +DPPRSG+    +  V  +  P I+Y+SCNP +L  D
Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPEIIYVSCNPKTLVTD 416

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L +L+   + + +  + D FP T H E  V L++K
Sbjct: 417 LEVLTQKGYKVVQTKVKDMFPNTPHAETVVKLIKK 451


>gi|224543151|ref|ZP_03683690.1| hypothetical protein CATMIT_02351 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523938|gb|EEF93043.1| hypothetical protein CATMIT_02351 [Catenibacterium mitsuokai DSM
           15897]
          Length = 479

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 153/388 (39%), Gaps = 38/388 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +   Y + L  K +  +++    +V    +    +P +YR +             +
Sbjct: 11  SCQFINQGYVKSLEYKNEECKKIFKDLKVNVHPVSGMEDPYYYRNKTIIAF---DKTYNY 67

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEM-------MATIRLEPLLRAKLFQIDYLTS- 112
            ++++ +   +     +      +A++ ++         +I      R ++  I    + 
Sbjct: 68  GLYEENSHRIIPYKSCLIHDQETDAIISKIAILFRKYRVSIYDPQRRRGEIRHILIRRAV 127

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRD 165
           +++Q +V ++ +  +    +    +L  A  + K  +    +         + K+   + 
Sbjct: 128 KTNQTLVVIVSNEAIFKGSKNFCNQLVKAFPSIKSIVLNTNKRQTSIVLGEQEKVLFGKG 187

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           ++ + L      + ++    SF Q N      +    L+        +++ YCG G   L
Sbjct: 188 FIVDELC----GMTFKISPRSFYQINHDQCEALYSKALSLITVKDPKIMDTYCGIGTIGL 243

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           + +++  +V+ VE+ K +V+ A+ N   N V N+K ++  + EF            + + 
Sbjct: 244 IASKNAKQVIGVELNKDAVKDAKLNKTFNKVENIKFIQGDATEF------------MVEA 291

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIE 342
                    I +DPPRSG  +  +          I+Y+SC+P +  RDL +     +  +
Sbjct: 292 AKQKVDVDVIIMDPPRSGSTETFIKAAVSLKPKEIVYVSCDPHTQVRDLKLFRKLGYDFK 351

Query: 343 RLALFDQFPYTRHMECGVLLVRKPSGWH 370
            +  +D FP+T H+E  VLL  K    H
Sbjct: 352 DVYPYDMFPFTSHVETVVLLSHKKPDSH 379


>gi|58336957|ref|YP_193542.1| RNA methyltransferase [Lactobacillus acidophilus NCFM]
 gi|227903514|ref|ZP_04021319.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC
           4796]
 gi|58254274|gb|AAV42511.1| RNA methyltransferase family [Lactobacillus acidophilus NCFM]
 gi|227868401|gb|EEJ75822.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus acidophilus ATCC
           4796]
          Length = 460

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 144/386 (37%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y++QL  K + + + +  +             I    P HYR +A++ I +    
Sbjct: 91  LAHLSYDKQLEFKRNNVLESLKKYHPRGYAKYKVKKTIPAPNPWHYRNKAQYQIENLHGK 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               +F   +   + +      S            LI+ L + +    R  P ++  + +
Sbjct: 151 TKLGLFAPNSHRLIDLPKMPTQSEDTQKVEREIKVLIDKLHVPIANYRRHLPGIKTVVVR 210

Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163
               T +    ++T+ +  + L    +E      +                 NKT+  L 
Sbjct: 211 QSEATKEIQVTLITIDHKIKNLMPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           ++ + E +      L       +F Q N    V++    L          L++ Y G G 
Sbjct: 271 KNQITEEILDKKFAL----SPRAFFQLNPVQTVNLYSEALKYLDLSPDQTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +V+ A +N+  NH+ N   ++ S+++             L
Sbjct: 327 LGILAADRVKQVIGIETIPEAVKDAEHNVKLNHIKNANYIQGSTEKI------------L 374

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++  +      + VDPPR+GL  + +  +        +YISCNP +L +DL +LS  + 
Sbjct: 375 PELQNNGVPIDALIVDPPRTGLAKSLIKTILRVKPQTFVYISCNPSTLAQDLVLLSEAYD 434

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLVLRK 460


>gi|269792573|ref|YP_003317477.1| RNA methyltransferase, TrmA family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100208|gb|ACZ19195.1| RNA methyltransferase, TrmA family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 457

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 147/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEP--IHYRMRAEFHIWHDGD 56
              L    Y  QL+ K   ++  M     F+ P ++     P    YR +A   +   G 
Sbjct: 80  GCQLQHADYPLQLSMKRRVVQDAMRRIGGFEDPPVEPCEMSPLQWGYRNKAIVPVRSQGR 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI----------------RLEPLL 100
                 +   + E + +      S  IN +M  +   +                R    L
Sbjct: 140 GWGMGFYRPFSHEVVPLRSCPVMSDEINRVMGLIRDFLEPRIRGGLLSPYREGDRPSGSL 199

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R  + +    T +   ++V     R    +  E   RL + L      +           
Sbjct: 200 REVVVRHGMRTGELLVSLVMRQDPRGRLLSDLEGLFRLLEGLGVVGLSV--FRNRRDANF 257

Query: 161 CLDRDY----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215
             D D+      +R+      +       SF Q N      M + V+         D+LE
Sbjct: 258 VWDGDFAWGIGRDRMWEVLGGMRLSYDVTSFFQVNTHQAERMFQHVVDLLDETGARDVLE 317

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G+ + ++A    RV+AVE    +VE  R N+  N ++ V  +  ++++    +  
Sbjct: 318 LYSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHGVTPLLGAAEDVLGDL-- 375

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333
                           F+ + +DPPR G     +  +   A PH++Y+SCNP +L RDL 
Sbjct: 376 -------------GGDFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATLARDLM 422

Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +LS   + + R+  FD FP T H+EC  L+ R
Sbjct: 423 LLSQGGYVLRRVRPFDMFPQTCHVECVTLMSR 454


>gi|253580204|ref|ZP_04857471.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848723|gb|EES76686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 454

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 156/392 (39%), Gaps = 49/392 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMM----LAFQVPNLQIFRSE-PIHYRMRAEFHI---W 52
            G +     YE QL  K  ++R+++             I  S     YR + EF     +
Sbjct: 79  GGCMYQTMSYENQLKMKECQVRELLDGALNGTDYQWEGIHGSPIEFRYRNKMEFSFGDAY 138

Query: 53  HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLR 101
            DG     +     T + +  D        +  ++  +              ++    LR
Sbjct: 139 KDGPLTLGLHKKGSTYDVLTADDCQLVHEDMTKILTCVHEYFLKRNVSYYKKMQHTGYLR 198

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRA 155
             L +    T +    ++T        ++ +E  + L         +H     +  + ++
Sbjct: 199 HLLLRRGVTTGEILVHVITTSQEEHDLESLKEELLALPLEGKIVGIMHIINDSLSDVVQS 258

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL- 214
           ++T+I   +D+  E L      L ++    SF QPN+     +   V       +  ++ 
Sbjct: 259 DETRILYGQDFFYETLL----GLRFKISTFSFFQPNSLAAEVLYSIVREYIGDTKDKVVF 314

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G  + + A   D V+ VEI + +VEAA+ N A N+++N K +            
Sbjct: 315 DLYSGTGTIAQLAASVADEVIGVEIVEEAVEAAKQNAALNNLSNCKFIVGDV-------- 366

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
                  LK +D  + +   I +DPPR G+    +  + +Y   HI+YISC   SL RDL
Sbjct: 367 -------LKVLDDLTEKPDVIILDPPRDGIHPKALPKILSYGVDHIVYISCKATSLARDL 419

Query: 333 -SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
            + L+  + +E+    DQF  T H+E  VLL 
Sbjct: 420 PAFLAAGYKLEKACCVDQFCQTVHVETVVLLS 451


>gi|218782690|ref|YP_002434008.1| RNA methyltransferase, TrmA family [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764074|gb|ACL06540.1| RNA methyltransferase, TrmA family [Desulfatibacillum alkenivorans
           AK-01]
          Length = 463

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 158/395 (40%), Gaps = 57/395 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIW----------- 52
            Y++QL  K +++ + +           +  +       YR + EF              
Sbjct: 88  DYKKQLEYKGEQVAESLHHIGGLENVPVHPTMGSELIYGYRNKMEFSCSDHRWLLPDEIA 147

Query: 53  ----HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKL 104
                D      +       + M I+  +  +   N ++  + A ++  PL    L++  
Sbjct: 148 LEEEVDRSFALGLHVPGTFHKVMDIEKCLLQTDDANDILQAVHAYMKDSPLPAYGLKSHE 207

Query: 105 ----FQIDYLTSQSDQAIVTLIYH-------RLLDDAWRECAIRLRDALHARKYQIQLIG 153
               F +   +   D+ ++ ++         + L DA  E   ++   ++    +   + 
Sbjct: 208 GFWRFAVIRHSVARDEYLINIVTSWEELPTVQPLADALVEKFPKITAIVNNITDRKSGVA 267

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
             +K      +DY+ + +        Y+   NSF Q N     ++ + +        G+ 
Sbjct: 268 VGDKEICLKGQDYIMDSIGPWE----YKVSANSFFQTNTRQAKNLYQTMEDYADLKGGER 323

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+LY G G   + L+     VL +EI + +V  AR N   N VNN   +          
Sbjct: 324 VLDLYSGAGAIPIWLSPKAGEVLGIEIVEVAVADARDNCERNKVNNCTFLVGD------- 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCR 330
                    L+ +D  +++   + +DPPRSG+    V   M  A   ++YISCNP +L R
Sbjct: 377 --------ILETLDEVAHKPDVLVIDPPRSGMHGKVVKKVMAMAPSKMVYISCNPTTLAR 428

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL +LS T+++E +   D FP+T H+E    LV+K
Sbjct: 429 DLELLSETYSVEEVQPIDMFPHTHHIEAVARLVKK 463


>gi|295109231|emb|CBL23184.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus obeum A2-162]
          Length = 462

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 158/403 (39%), Gaps = 58/403 (14%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAF----------QVPNLQ---IFRSE-PIHYRMR 46
            G +     YE QLA K  ++R+++              + + +   I  S     YR +
Sbjct: 79  GGCMYQTMSYENQLAMKETQIRELLEDALVQGGQVDENGLADFEWEGIHGSPIEFGYRNK 138

Query: 47  AEFHI---WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA----------- 92
            EF     + DG     +     T + +  D        +  ++I +             
Sbjct: 139 MEFSFGDEYKDGPLSLGLHKKGSTYDILNTDDCKLVHKDMTDILICVREFFREKGASYYR 198

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARK 146
            ++    LR  + +    + +    +VT        +  +E  + L         +H   
Sbjct: 199 KLQHTGYLRHLMLRRGVTSGEILVHLVTTTQEEYDLEPLKEQLLALPLEGKIVGIMHILN 258

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
             +  + ++++T+I   +DY  E L      L +R    SF QPN+     +   V    
Sbjct: 259 DSLSDVVQSDETRILYGQDYFYETLL----GLKFRISTFSFFQPNSLAAEVLYNIVREYI 314

Query: 207 KGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +   G ++ +LY G G  + +LA     V+ +EI + +V+AAR N   N ++N + +   
Sbjct: 315 QNTSGMEVFDLYSGTGTIAQLLAPVAKEVIGIEIIEDAVKAARENAKLNGLDNCRFIAGD 374

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISC 323
                           LK +D  + +   I +DPPR G+    +  + +Y    I+Y+SC
Sbjct: 375 V---------------LKVLDDLTEKPDVIVLDPPRDGIHPKALPKILSYGVNRIVYVSC 419

Query: 324 NPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              SL RDL + L+  + +E+    DQF  T   E   LLV++
Sbjct: 420 KATSLARDLEAFLAAGYRLEKACCVDQFCETVWTEAVALLVKE 462


>gi|254226236|ref|ZP_04919829.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae V51]
 gi|125621209|gb|EAZ49550.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V51]
          Length = 440

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 154/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQVHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + + +       +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|121728979|ref|ZP_01681983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae V52]
 gi|147674864|ref|YP_001217954.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae O395]
 gi|262167283|ref|ZP_06034993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC27]
 gi|226725397|sp|A5F5I8|RUMA_VIBC3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|121628745|gb|EAX61212.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae V52]
 gi|146316747|gb|ABQ21286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae O395]
 gi|227014344|gb|ACP10554.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae O395]
 gi|262024258|gb|EEY42949.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC27]
          Length = 440

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + +         +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQEHVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|91212152|ref|YP_542138.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli UTI89]
 gi|117625013|ref|YP_854001.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli APEC
           O1]
 gi|218559773|ref|YP_002392686.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli S88]
 gi|237706587|ref|ZP_04537068.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp.
           3_2_53FAA]
 gi|122422654|sp|Q1R7Q7|RUMA_ECOUT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|143580911|sp|A1AEX2|RUMA_ECOK1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|91073726|gb|ABE08607.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           UTI89]
 gi|115514137|gb|ABJ02212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli APEC
           O1]
 gi|218366542|emb|CAR04295.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli S88]
 gi|226899627|gb|EEH85886.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia sp.
           3_2_53FAA]
 gi|294492471|gb|ADE91227.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           IHE3034]
 gi|307625646|gb|ADN69950.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli UM146]
 gi|315289302|gb|EFU48697.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           110-3]
 gi|323950998|gb|EGB46874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H252]
 gi|323957203|gb|EGB52927.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli H263]
          Length = 433

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   +L    H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADRE---KLECFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L        D +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDCVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|317495594|ref|ZP_07953962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum
           M424]
 gi|316914408|gb|EFV35886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella moribillum
           M424]
          Length = 544

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 75/388 (19%), Positives = 152/388 (39%), Gaps = 38/388 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFR--SEP--IHYRMRAEFHIWHDGDD 57
           L    YE+QL  K + L      +     P+  + +  + P   HYR + +F +      
Sbjct: 86  LAHVSYEKQLEYKRNILLDAFDKYYKLPKPDKLVLKTLASPIIEHYRNKNQFPLAVRNGR 145

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           +   ++ + + + + I+  +        I  L  + +   ++E     K + + Y+++++
Sbjct: 146 VIAGLYKEGSNDLVEINEDVALHENGNKITNLAKKCLGKYKVEISTNKKTYGVKYISTRT 205

Query: 115 ----DQAIVTLIYH----RLLDDAWRECAIR--LRDALHARKYQIQLIGRANKTKICLDR 164
                   +T + +    + LD    E      ++  +         +   ++       
Sbjct: 206 SFYNGDVQLTFVANTDKIKNLDKVVNEIKREAIVKSIVLNVTNDNDHLVMGSENITLYGS 265

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           DY+ E++        Y     SF Q N G    + + V+      + + +L+ +CG G  
Sbjct: 266 DYIVEKIG----DTKYELSAKSFFQLNPGATKKLYDKVVEFADLRETNIVLDAFCGVGTI 321

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
              ++R    V  V+I + +++ A  N+  N++ N   V   + +     ++        
Sbjct: 322 GQYVSRKCHEVYGVDIVEDAIKDANNNVKLNNLTNCIYVAGDANKIVPRWKK-------- 373

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                   F    VDPPR+GL      ++      I+Y+SCNP +L RDL +L+  + I 
Sbjct: 374 ----KGINFDVAIVDPPRTGLGHLAKNLLDVDAKKIVYVSCNPSTLARDLKVLTRKYKIR 429

Query: 343 RLALFDQFPYTRHMECGVLLVRKPSGWH 370
           R+   D FP T  +E   LL +     H
Sbjct: 430 RIQPIDMFPGTAAVETVALLSKLDVDKH 457


>gi|301027558|ref|ZP_07190891.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           69-1]
 gi|300394901|gb|EFJ78439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli MS
           69-1]
          Length = 433

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLDSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVAG-----EMPWYDSNRLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N ++NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|229527058|ref|ZP_04416453.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae
           12129(1)]
 gi|229335455|gb|EEO00937.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae
           12129(1)]
          Length = 440

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + +         +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSSSWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|110806549|ref|YP_690069.1| 23S rRNA 5-methyluridine methyltransferase [Shigella flexneri 5
           str. 8401]
 gi|122957267|sp|Q0T1Q1|RUMA_SHIF8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|110616097|gb|ABF04764.1| putative enzyme [Shigella flexneri 5 str. 8401]
          Length = 433

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +      +  + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTASLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|229524438|ref|ZP_04413843.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae bv.
           albensis VL426]
 gi|229338019|gb|EEO03036.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae bv.
           albensis VL426]
          Length = 440

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + +         +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMPEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +++L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|153803087|ref|ZP_01957673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MZO-3]
 gi|124121369|gb|EAY40112.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           MZO-3]
          Length = 440

 Score =  241 bits (615), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 154/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + + +       +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMPEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLNFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +++L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|260592299|ref|ZP_05857757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis
           F0319]
 gi|260535749|gb|EEX18366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis
           F0319]
          Length = 474

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 145/403 (35%), Gaps = 65/403 (16%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHD--------- 54
            Y +QL  K  ++   +       L  FR          YR + EF   +          
Sbjct: 91  PYSEQLKAKQQQVYDQLSRIGKVELPEFRPIMGSVHTKEYRNKLEFGCANKRWYTAEELA 150

Query: 55  ----------GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---- 100
                     G   +HI       +   I+       L N +  ++        +     
Sbjct: 151 ALPEGVGLSGGAIGFHITGSFD--KIYPIEKCWLMDNLCNEIRNDIRDYALETGMTFYDI 208

Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
                 L  +    S + + ++ + +H   ++   E A  L   +  +  QI  +   + 
Sbjct: 209 RAQHGLLRDLMLRNSNTGEWMLLVQFHYD-EEGDDERAKALMQHIAEKFPQITSLFYVDN 267

Query: 158 TK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
            K           +    D++ E +      L ++    SF Q N     H+   V    
Sbjct: 268 QKGNDTFNDLELTLYKGNDHIFETM----EDLKFKVSPKSFYQTNTEQAYHLYS-VAREF 322

Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             + GD  + +LY G G  +  +A+   +V+ +E    ++E A+ N   N+++N      
Sbjct: 323 ANLTGDELVYDLYTGTGTIANFIAKKARKVIGIEYVPEAIEDAKVNSNVNNIDNTLFYAG 382

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYIS 322
             K+              ++      R   I  DPPR+G+    V ++   +   I+Y+S
Sbjct: 383 DMKDILT-----------EEFIQKHGRPDVIITDPPRAGMHPDVVNVILGASPKRIVYVS 431

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CNP +  RDL++L   + +  +   D FP+T H+E  VLL ++
Sbjct: 432 CNPATQARDLALLDADYKVAAVQPVDMFPHTPHVENVVLLEKR 474


>gi|163755043|ref|ZP_02162164.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1]
 gi|161325110|gb|EDP96438.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1]
          Length = 470

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 141/396 (35%), Gaps = 56/396 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHI----WHD------ 54
           YE QL  K   +   +              +  SE   YR + EF      W        
Sbjct: 92  YEHQLFYKQKEVLNNLTRIGKVALPELTPILGSSEQYFYRNKMEFSFSDSRWLTQEEVDS 151

Query: 55  ----GDDLYHIMFDQQTKERM-RIDYFMPGSLLINAL-----------MIEMMATIRLEP 98
               GD            +++  I+     +   NA+            I    T     
Sbjct: 152 DEDLGDRNALGFHIPGMWDKILDINKCHLQADPSNAIRNTIKEFATENNIAFFNTRHQTG 211

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
           LLR  + +    TS   + +V LI     D   RE  +            +  +      
Sbjct: 212 LLRTLMIR----TSSIGEVMV-LIQFYKEDKEKRELLLNFVQEKFPEITSLLYVINGKGN 266

Query: 159 KICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
               D++ +     + +      L ++    SF Q N+      L  +     G+QGD  
Sbjct: 267 DTIYDQEVICYAGRDHIFEEMEGLQFKINAKSFYQTNSDQAYE-LYKITRDFAGLQGDEL 325

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G  +  +++   +V+ VE    ++EAA+ N A N++ N +      K+   A
Sbjct: 326 VYDLYTGTGTIAQFVSKKAKKVIGVESVPEAIEAAKENAAFNNITNTEFFVGDMKKVFNA 385

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCR 330
                      +          I  DPPR G+    V  +   A   ++Y+SCN  +  R
Sbjct: 386 -----------EFIETHGTPDVIITDPPRDGMHADVVQQILNIAPKKVVYVSCNSATQAR 434

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           DL+++  T+ + ++   D FP T H+E  VLL R+ 
Sbjct: 435 DLALMDATYKVTKVQAVDMFPQTHHIENVVLLERRN 470


>gi|331664345|ref|ZP_08365251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA143]
 gi|284922722|emb|CBG35810.1| 23s rRNA (uracil-5-)-methyltransferase [Escherichia coli 042]
 gi|331058276|gb|EGI30257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TA143]
          Length = 433

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N ++NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNDLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|282898476|ref|ZP_06306466.1| 23S rRNA methyltransferase/RumA [Raphidiopsis brookii D9]
 gi|281196642|gb|EFA71548.1| 23S rRNA methyltransferase/RumA [Raphidiopsis brookii D9]
          Length = 453

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 139/390 (35%), Gaps = 47/390 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
                   YE QL  K +++ Q +              +  + P+ YR +A + I     
Sbjct: 84  GCQWQHISYEYQLQVKQNQVIQALERIGNFVNPPVAPVLTTNSPLGYRNKATYPIKTSST 143

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104
             +    + + T   + ++        +N L+ E+   I+ +             +R   
Sbjct: 144 GQVQAGYYQKGTHLLINLNQCPVQDPRLNPLLTEIKQDIQKQGWSVYDENRHQGEIRHLG 203

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +I   T +    +V         +     W     +L                   T  
Sbjct: 204 LRIGRYTGEILLTLVVKNGQLPGIEIQAQEWLHRYPQLVGICLNHNGDRTNAIFGRVTTC 263

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
                Y+ ER       L ++   ++F Q        +LE V+ +   +QGD  L++ YC
Sbjct: 264 IAGVPYLRERFA----GLEFKVRPDTFFQVYTETAEALLE-VIQSQLNLQGDEILVDAYC 318

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +L LA+   + + +EI   +VE A  N   N + N K    + ++    +     
Sbjct: 319 GIGTLTLPLAKQARQTIGLEIQPAAVEQAICNAQHNGIINAKFQIGAVEDILPKL----- 373

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                           + +DPPR G +   +  +       I YISC   +L RDLS+L 
Sbjct: 374 ----------ETVPDIVLLDPPRKGCESIVLESLLKLKPKKIAYISCKASTLARDLSLLC 423

Query: 337 TT--HTIERLALFDQFPYTRHMECGVLLVR 364
            +  + ++++   D FP+T H+E    L R
Sbjct: 424 ASSEYKLKKVQPADFFPHTPHVETVAFLER 453


>gi|86604758|ref|YP_473521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           JA-3-3Ab]
 gi|86553300|gb|ABC98258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           JA-3-3Ab]
          Length = 464

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 139/382 (36%), Gaps = 46/382 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIM 62
            Y QQL  K   LR  +          P   +   +P+ YR +  + I   +G  L    
Sbjct: 102 SYAQQLVTKQQILRDALERIGGLTLPEPVPILGSPQPLRYRNKVTYPIAKAEGQPLRMGY 161

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLT 111
           +   +   + ++        ++  + E+   ++               LR    +I   T
Sbjct: 162 YRPGSHRLVNLNQCPVQDERLDVFLREIKRDLQEAGWSVYDESRHQGHLRHLGLRIGRRT 221

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDRDYV 167
            +    +V+        + W +  ++    L                  +T++   R  +
Sbjct: 222 REVLLTLVSCSRDLPHLERWAKRWMQCYPDLVGVCLNLNPARTNTIFGPQTEVIAGRGSL 281

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            E L      L +     SF Q N         W++   +    + +L+ YCG G  +L+
Sbjct: 282 REELA----GLSFWIDSTSFFQVNTEQAEAFFTWIVDQLQLRGEEIVLDAYCGIGTLTLL 337

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LAR   R + VE+   +V  ARYN   N + + +  + + +     +             
Sbjct: 338 LARRAKRAIGVEVLPAAVAQARYNAQFNGIPSAQFFQGAVETVLPTLP------------ 385

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL--STTHTIE 342
                   + +DPPR G +   + +++      ++YISC+P +L RDL IL    ++ + 
Sbjct: 386 ----PADIVVLDPPRRGCERQVLEILKQRQPQRLVYISCHPATLARDLQILMAEGSYRLT 441

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           +    D FP T H+E    L R
Sbjct: 442 QWRAADFFPQTGHVEGVAFLER 463


>gi|163813943|ref|ZP_02205337.1| hypothetical protein COPEUT_00096 [Coprococcus eutactus ATCC 27759]
 gi|158450813|gb|EDP27808.1| hypothetical protein COPEUT_00096 [Coprococcus eutactus ATCC 27759]
          Length = 457

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 151/399 (37%), Gaps = 58/399 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEP--IHYRMRAEFHI--- 51
             +     Y+ QL  K + ++ ++             Q   + P    YR + EF     
Sbjct: 80  GCSYQTLSYDNQLKVKEELVKGLLDGVIDGETHPYEWQGILASPVTQGYRNKMEFSFGDE 139

Query: 52  WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI-----------EMMATIRLEPLL 100
           + DG     +     T + +++D     +  +N ++                 ++   LL
Sbjct: 140 YKDGPLALGLHKKNSTYDIVQMDDCYIVNDDLNKIVKYTVEFCRAAGLPYYKKMQHTGLL 199

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----------RLRDALHARKYQI 149
           R  + +    ++ +   +V L+      DA    A            ++   LH     +
Sbjct: 200 RHLVIR---RSATNGDLLVNLVTSTQNLDALDLDAFVRGLLDLPLEGKIAGILHTENDSM 256

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                +++T +    +Y+ E +      L ++    SF Q N      + +   +     
Sbjct: 257 ADAVISDRTNLLYGTEYIYETVL----GLQFKISPFSFFQTNTKSAERLYDKARSYVGDT 312

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +  ++ +LY G G  + +LA    +V+ VEI + +V AAR N   N ++N + +      
Sbjct: 313 KDAVIFDLYSGTGTIAQLLAPVAKKVIGVEIVEEAVAAARVNAKLNGLDNCEFIAGDV-- 370

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326
                        LK ID    +   I +DPPR G++   +  +  Y    ++YISC P 
Sbjct: 371 -------------LKVIDEIEEKPDFIVLDPPRDGINPKALTKIINYGVNELVYISCKPT 417

Query: 327 SLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           SL RDL  L    + + +    DQFP T H+E  V + R
Sbjct: 418 SLARDLVTLQENGYYVTKACAVDQFPGTVHVETIVKMQR 456


>gi|229495436|ref|ZP_04389171.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC
           35406]
 gi|229317879|gb|EEN83777.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC
           35406]
          Length = 475

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 141/406 (34%), Gaps = 60/406 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIW---- 52
                   YE+QL  K  ++R  M              +   E   YR + EF       
Sbjct: 84  GCKWQHIPYEEQLTAKATQVRDAMERLGKVEVGEYLPILGSQETYQYRNKLEFTFSNRRW 143

Query: 53  -------------HDGDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEP 98
                         + D+            + + I+    G+ L N +   + A      
Sbjct: 144 RTSEELASLPEGLGEADNSGLGFHIPGKFDKVLDIEECHLGNELSNRIRNFVRAYCLERI 203

Query: 99  L------LRAKLFQIDYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDA------L 142
                  LRA+   +  L    TS+    ++    H    D     A    +       L
Sbjct: 204 ERYPFYDLRAQEGGMRTLMIRTTSKGHTMVLVAFAHEKAHDREELLAAIHHEFPEVNSLL 263

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
           +    ++         +      +++E +      L +R    SF Q N+   +  L  V
Sbjct: 264 YVINTKLNDTFTDLSVETYYGSPFIEEEM----EGLTFRIGPKSFYQTNSHQALE-LYRV 318

Query: 203 LAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             +  G+ G+  + +LY G G  +  +AR   +V+ +E    ++E A  N   N ++N  
Sbjct: 319 ARSFAGLTGEEIVYDLYTGTGTIANFVARDAKKVVGIEYIPEAIEDAHLNSQVNKIDNTI 378

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318
                 K+               ++         +  DPPR+G+    +  +   A P I
Sbjct: 379 FYAGDMKDILT-----------PELIARHGAPDVVITDPPRAGMHPDVIKTLLGAAPPRI 427

Query: 319 LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           +Y+SCNP +  RD ++L    + + ++   D FP+T H+E  +LL 
Sbjct: 428 VYVSCNPATQARDAALLVEGGYRVLKVQPVDMFPHTHHVENVMLLE 473


>gi|188495297|ref|ZP_03002567.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           53638]
 gi|188490496|gb|EDU65599.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           53638]
          Length = 433

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +      +  + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPCDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|282877944|ref|ZP_06286753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis
           ATCC 35310]
 gi|281299945|gb|EFA92305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis
           ATCC 35310]
          Length = 508

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 80/405 (19%), Positives = 149/405 (36%), Gaps = 57/405 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFH------ 50
                +  YE+QL  K  ++   +       L  FR      +   YR + EF       
Sbjct: 120 GCKWQMLPYEEQLKAKQKQVHDQLERIGKIELPEFRPIMGSEKTYEYRNKLEFGCSNKRW 179

Query: 51  ---------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
                    + +D  +           +   I+       L N +   +        +  
Sbjct: 180 LTWEEVTSGVKYDHMNAIGFHITGAFDKIYPIEKCWLMDDLCNQIRNCIRDYAIDHDISF 239

Query: 100 --LRA---KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ---- 150
             LRA    L  I   ++ + + +V L+  +  ++   + A  L   +     QI     
Sbjct: 240 FDLRAQTGLLRDIMIRSANTGEWMV-LVQFKFQEEGDEQRAHGLLQHVADSFPQITSLLY 298

Query: 151 ------LIGRANKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
                      ++T +    +D++ E +      L ++    SF Q N     H+     
Sbjct: 299 VDNQKCNDTFGDQTVVVFKGKDHITETMG----DLKFKVAAKSFYQTNTNQAYHLYSVAR 354

Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              +    +L+ +LY G G  +  +AR    V+ +E  + +++ A+ N AAN ++N +  
Sbjct: 355 EFAQLTGKELVYDLYTGTGTIANFVAREAREVIGIEYVEDAIKDAKVNSAANDIHNTQFY 414

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320
               K+              ++      R   I  DPPR+G+    V  +   A   I+Y
Sbjct: 415 AGDMKDILT-----------EEFIAEHGRPDVIITDPPRAGMHPDVVRTILGAAPQRIVY 463

Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +SCNP +  RDL +L   + +  +   D FP+T H+E  VLL ++
Sbjct: 464 VSCNPATQARDLQMLDEQYKVMAVQPVDMFPHTPHVENVVLLEQR 508


>gi|166033314|ref|ZP_02236143.1| hypothetical protein DORFOR_03040 [Dorea formicigenerans ATCC
           27755]
 gi|166027671|gb|EDR46428.1| hypothetical protein DORFOR_03040 [Dorea formicigenerans ATCC
           27755]
          Length = 461

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 147/400 (36%), Gaps = 53/400 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSE-PIHYRMRAEFHIW--HDG 55
             T     YE+Q+  K  +++ MM      +     +  S     YR + EF     +  
Sbjct: 81  GCTYQNLPYEEQVKLKESQVKAMMDEAVDGDYIWEGVLESPVRSEYRNKMEFSFGDEYKD 140

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMAT-----------IRLEPLLRAK 103
             L   M  + +  + + +            ++   +             +R E   R  
Sbjct: 141 GPLALGMHKRGSFHDIVNVCDCQIVDGDYRKILACTLECARESGLPYYHRMRHEGYFRHL 200

Query: 104 LFQIDYLTSQSDQAIVTLIYH------RLLDDAWR------ECAIRLRDALHARKYQIQL 151
           L +    T +    IVT          +   D W       E + ++   LH +   +  
Sbjct: 201 LVRKAVKTEEILIDIVTASEEGFGSKPKEFLDKWAAALQALELSGKIVGILHTKNDSLAD 260

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           + +   T++   +DY  E L      L ++    SF Q N+     + E           
Sbjct: 261 VVKDEGTEVLFGQDYFYEELL----GLKFKITPFSFFQTNSLGAEVLYEKAREYIGDTNE 316

Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            ++ +LY G G  + +LA    +V+ VEI + +VEAA+ N   N ++N            
Sbjct: 317 KVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVEAAKVNAKLNGLDNCTFWAGDV---- 372

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328
                      LK ID        I +DPPR G++   +  +       ++YI+C P SL
Sbjct: 373 -----------LKVIDELGEVPDLIMLDPPRDGVNPKALMKILNFGVDRLVYIACKPTSL 421

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            RDL ++    + +E++A  D FP T H+E    L R  S
Sbjct: 422 ARDLEMIQGRGYKVEKIACVDLFPNTVHVEVVCCLHRVNS 461


>gi|153214523|ref|ZP_01949432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae 1587]
 gi|124115325|gb|EAY34145.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae 1587]
          Length = 440

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + +         +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +++L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLDKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|237719530|ref|ZP_04550011.1| RNA methyltransferase [Bacteroides sp. 2_2_4]
 gi|229451390|gb|EEO57181.1| RNA methyltransferase [Bacteroides sp. 2_2_4]
          Length = 472

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +   +   YR + EF              
Sbjct: 91  PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 211 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  V     G+ 
Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFTGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 385 ILT-----------QDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 434 TQARDLQLLDEKYKVKAIQPVDMFPHTHHVENVVLLELR 472


>gi|150005861|ref|YP_001300605.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482]
 gi|149934285|gb|ABR40983.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482]
          Length = 473

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 154/404 (38%), Gaps = 62/404 (15%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50
            L    Y +Q+  K  ++   +      ++P +           YR + EF         
Sbjct: 89  CLP---YTEQIKYKQKQVTDNLTRIGKIELPEISPIMGSEKTEFYRNKLEFTFSNKRWLT 145

Query: 51  -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
                  + +D  +           + + I+       + N +   +             
Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205

Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-- 154
           LR++   L  +   TS + + +V L+  ++++++  +   +L   +     QI  +    
Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEESEMDLMKQLLAFVAEHFPQITSLLYVV 264

Query: 155 -------ANKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
                   N  ++ +    D++ E +      L ++    SF Q N+G   + L  V   
Sbjct: 265 NNKCNDTINDLEVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             G+ G   + +LY G G  +  ++R   +V+ +E    ++E A+ N A N ++N     
Sbjct: 320 FAGLTGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
              K+              ++      R   I  DPPR+G+ +  +  +       I+Y+
Sbjct: 380 GDMKDILT-----------QEFINQHGRPDVIITDPPRAGMHNDVINTILFAEPQRIVYV 428

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP +  RDLS+L   + +  +   D FP+T H+E  VLL ++
Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|260174511|ref|ZP_05760923.1| RNA methyltransferase [Bacteroides sp. D2]
          Length = 456

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +   +   YR + EF              
Sbjct: 75  PYSEQIRYKQKQVEDNLRRIGKIELSEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 134

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 135 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 194

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 195 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 253

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  V     G+ 
Sbjct: 254 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 308

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 309 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKINAEINDIKNALFYAGDMKD 368

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 369 ILT-----------QDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 417

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 418 TQARDLQLLDEKYKVKAIQPVDMFPHTHHVENVVLLELR 456


>gi|254520203|ref|ZP_05132259.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226913952|gb|EEH99153.1| RNA methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 453

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 144/393 (36%), Gaps = 47/393 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW---HD 54
             T     Y++QL    + ++ +     +P  +    +   E   YR + EF        
Sbjct: 79  GCTSQNLTYDKQLDLLSEEVKALFKEADIPMGEYLGVVGSKEQWEYRNKMEFTFGDFEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT-----------IRLEPLLRAK 103
           G+    +    ++   + +D  +        ++ E +             ++ E  LR  
Sbjct: 139 GELTLGMHMKGKSFGIITVDKCLIVDEDFKTVIRETVNYFKDKELPYYRVMKREGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT          + +         +L   LH             K
Sbjct: 199 VIRKAINTGELMVNIVTTTQINFDLSEYVDLLKSQTYKGKLVSILHTENNSFSDAVIPEK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
             +   +DY+ E L      L ++    SF Q N      +   V          ++ +L
Sbjct: 259 VNLLFGKDYITENLL----GLQFKISPFSFFQTNTKGAESLYSIVRDFMGESNDKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    + A +  +V+ +E+ + +VEAA+ N   N++NN + +     E  + ++  
Sbjct: 315 YCGTGTIGQIAASNAKKVVGIELIEEAVEAAKENAKLNNLNNCEFLAGDVAEIIKTVK-- 372

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPRSG+    +  V  +    I+Y+SCNP +L  +L  
Sbjct: 373 -------------DKPDIIILDPPRSGVHPKALEYVIKFNAKEIIYVSCNPKTLVENLRD 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           L    + + +  + D FP T H E  V LV K 
Sbjct: 420 LIGAGYKVVQSTVKDMFPNTPHAEVVVKLVLKD 452


>gi|315608157|ref|ZP_07883149.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC
           33574]
 gi|315250126|gb|EFU30123.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC
           33574]
          Length = 490

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/399 (19%), Positives = 143/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDG-------- 55
            Y++Q+  K  ++   +       L  FR      +   YR + EF   +          
Sbjct: 109 PYQEQIKAKQQQVYDQLSRIGKVELPEFRPIMGSVKTQEYRNKIEFGCSNKRWLTKEEVA 168

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LR 101
               +  M            +   I+       L N +   +        +         
Sbjct: 169 SGTEFTNMNAIGFHITGAFDKIYPIEKCGLMDDLNNRIRNAIRDFAFATEISFYDIRQQH 228

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-- 159
             L  +    S + + +V + +H   ++     A+ L   +  +  +I  +   +  K  
Sbjct: 229 GLLRDVMIRNSNTGEWMVLVQFHYD-EEGDEAKALALLQHIGDKFPEITSLLYVDNQKCN 287

Query: 160 ---------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +    D++ E +      L ++    SF Q N     H+   V      + 
Sbjct: 288 DTFGDLPISVYKGNDHIFEVM----EGLRFKVGPKSFYQTNTEQAYHLYS-VAREFSQLT 342

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           GD  + +LY G G  +  +AR   +V+ +E    ++E A+ N   N ++N        K+
Sbjct: 343 GDELVYDLYTGTGTIANFVAREAKQVIGIEYVPEAIEDAKVNSEINGIDNTLFYAGDMKD 402

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                          +      R   I  DPPR+G+    V  +   A   I+Y+SCNP 
Sbjct: 403 ILND-----------EFIRQHGRPDVIITDPPRAGMHADVVNTILHAAPRRIVYVSCNPA 451

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL++L   + +E +   D FP+T H+E  VLLVR+
Sbjct: 452 TQARDLNLLDVDYRVEEVQPVDMFPHTPHVENVVLLVRR 490


>gi|329964803|ref|ZP_08301826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT
           12057]
 gi|328524654|gb|EGF51717.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT
           12057]
          Length = 511

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 146/400 (36%), Gaps = 57/400 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55
            Y +Q+  K  ++   +              +   +   YR + E+   +          
Sbjct: 127 PYSEQIKYKQKQITDNLTRIGKIELPEISPILGSEKTQFYRNKLEYTFSNKRWLTSEEVQ 186

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
            + +Y  M            + + I+       + N +   +             LR   
Sbjct: 187 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHNYSFINLRTHE 246

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V LI     D+     ++    + D        + +I    N 
Sbjct: 247 GMLRNMIVRTSTTGELMVILICKIEKDEEMELFKQLLQHVADTFPEITSLLYIINNKCND 306

Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T   L       +D++ E +      L ++    SF Q N+    + L  +     G+ G
Sbjct: 307 TITDLDVYTFKGKDHIFEEM----EGLRFKIGPKSFYQTNSEQAYN-LYKIARNFAGLTG 361

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  +++   +V+ +E    ++E A+ N   N ++N        K+ 
Sbjct: 362 NELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIHNTLFFAGDMKDM 421

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                        +D      R   I  DPPR+G+    V ++       I+Y+SCNP +
Sbjct: 422 LT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 470

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             RDL +L T + ++ +   D FP+T H+E  VLL  K +
Sbjct: 471 QARDLQLLDTKYKVKAVQPVDMFPHTHHVENVVLLELKNN 510


>gi|119509344|ref|ZP_01628493.1| 23S rRNA methyltransferase/RumA [Nodularia spumigena CCY9414]
 gi|119465958|gb|EAW46846.1| 23S rRNA methyltransferase/RumA [Nodularia spumigena CCY9414]
          Length = 468

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 151/390 (38%), Gaps = 47/390 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
                   Y  QL  K +++ Q +           +  +  S P+ YR ++ + +     
Sbjct: 81  GCQWQHIDYNYQLVAKHNQVIQALQRIGGFVNPPVDPMLTASAPLGYRNKSTYPLGISAT 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104
             +    + + + + + ++        +N L+ E+   I+            +  +R   
Sbjct: 141 GQVQAGYYQKGSHQLVNLNQCPVQDARLNPLLAEVKQDIQQRGWRIYDERKHQGQIRHLG 200

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKI 160
            +I   T +    +V   ++    +   +  ++    L      R          ++T+ 
Sbjct: 201 LRIGRRTGEMLLTLVVKDWNLPGIETQAQEWLKRYPLLMGVSLNRNSDRTNAIFGSETRC 260

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
                Y+ E+       L ++ + ++F Q        +L  V+ +   +QG   L++ YC
Sbjct: 261 IAGVPYLREKFA----DLEFQILPDTFFQVYTEAAEALL-QVIQSELNLQGQELLIDAYC 315

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +L LA+   + + +E+   +V+ A  N   N +NNV     + ++    M     
Sbjct: 316 GMGTLTLPLAKQVRQAIGIELQPEAVQQAIVNAQHNDINNVTFQVGAVEKLLPEM----- 370

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILS 336
                           + +DPPR G D A +  ++++ P  I+Y+SC   +L RDL +L 
Sbjct: 371 ----------GIVPDVVLLDPPRKGCDRAVIDSLLRSKPSRIVYVSCKVATLARDLKLLC 420

Query: 337 TT--HTIERLALFDQFPYTRHMECGVLLVR 364
               +TI R+   D FP T H+E    LVR
Sbjct: 421 EDGQYTITRVQPADFFPQTAHVEAVAFLVR 450


>gi|317132473|ref|YP_004091787.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense
           YUAN-3]
 gi|315470452|gb|ADU27056.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense
           YUAN-3]
          Length = 453

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 133/367 (36%), Gaps = 35/367 (9%)

Query: 21  LRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYF 76
           +R  +         P   +   + + YR +A++ +           +  ++   +  +  
Sbjct: 100 VRDALHRIAKLEIEPEPIVGCEQTLAYRNKAQYPVGWRDGRPVFGFYAPRSHRIVSAEEC 159

Query: 77  MPGS-----------LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           +                +    +        + +LR    +    T +     V      
Sbjct: 160 LLQPSVFKNVLGAFERWMLENDVSTYDEQTGKGVLRHVFLRQAPSTGELMICAVVNGGAG 219

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTVAGRTLIYRQ 182
            L     +      DA    K  +     A+   I  D     +  +R+T     L +  
Sbjct: 220 RL-PNREQLIRYCLDAAPQTKSIVLNRNTAHTNVILGDTCETLWGADRITDVLCGLRFSL 278

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAK 241
              SF Q N+     +           + D+L +LYCG G   L +A    R++ VE+  
Sbjct: 279 SPLSFYQVNSRQAERLYHAAAEFADLRKTDVLLDLYCGVGTIGLSMAGAVGRLIGVEVVP 338

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  A+ N A N + N       + E T  +++                   + VDPPR
Sbjct: 339 DAVADAKRNAAGNGIENADFFCADAGEATVRLQQ------------QGLAPDVVVVDPPR 386

Query: 302 SGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
            GLD A V  V   A   ++YISCNP++L RDL++     +   RL  +D FP T H+EC
Sbjct: 387 KGLDAAAVTAVVQMAPSRVVYISCNPETLARDLTLFAEEGYVCTRLRPYDLFPRTAHVEC 446

Query: 359 GVLLVRK 365
             LLV++
Sbjct: 447 CALLVKR 453


>gi|160942249|ref|ZP_02089558.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434806|gb|EDP12573.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 153/399 (38%), Gaps = 57/399 (14%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEP--IHYRMRAEFHIW--H 53
            G +     YE+QL  K ++++ ++           Q  ++ P    YR + EF      
Sbjct: 90  GGCIYQSLPYEEQLNIKKEQVKSLLDTVVEDGTYEFQGIKASPISSGYRNKMEFSFGDEV 149

Query: 54  DGDDLYHIMFDQQTKERM------RIDYFMPGSLLIN------ALMIEMMATIRLEPLLR 101
               L   M  + +   +      RI +     +L+        L +     ++ +  LR
Sbjct: 150 KDGPLALGMHKRGSFYDIVTTPECRIVHPDFCRILVATKEYFEELGVAFYKKLQHQGYLR 209

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI--------------RLRDALHARKY 147
             L +    T +    +VT      L +   E  +              +L   LH    
Sbjct: 210 HLLVRRAVKTGEILVDLVTSTQRDYLGERTEEEVLAEWTKKLVGLPLDGKLAGILHTEND 269

Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
            +  + +++ T I   +DY  E L      L +R    SF Q N+     + +       
Sbjct: 270 SLADVVQSDATHILYGQDYFYEELL----GLRFRISPFSFFQTNSLGAEVLYDTARGFVG 325

Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             +  ++ +LY G G  + +LA    +V+ VEI + +V +A+ N   N + N + +    
Sbjct: 326 DTKDRVVFDLYSGTGTIAQILAPVAKKVVGVEIVEEAVRSAQVNARLNGLENCEFLAGDV 385

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
                          LK ID    +   I VDPPR G+    +G +       I+YISC 
Sbjct: 386 ---------------LKVIDELQDKPDLIVVDPPRDGIHPKALGKIIDFGVDRIVYISCK 430

Query: 325 PDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           P SL RDL +L    + +E++   D FP T ++E  +++
Sbjct: 431 PTSLVRDLVVLQDRGYRVEKVCGVDMFPGTGNVEVVIMM 469


>gi|160884289|ref|ZP_02065292.1| hypothetical protein BACOVA_02267 [Bacteroides ovatus ATCC 8483]
 gi|156110028|gb|EDO11773.1| hypothetical protein BACOVA_02267 [Bacteroides ovatus ATCC 8483]
          Length = 472

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +   +   YR + EF              
Sbjct: 91  PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVH 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYAHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 211 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  V     G+ 
Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 385 ILT-----------QDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 434 TQARDLQLLDEKYKVKAIQPVDMFPHTHHVENVVLLELR 472


>gi|254881958|ref|ZP_05254668.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|319641039|ref|ZP_07995743.1| RNA methyltransferase [Bacteroides sp. 3_1_40A]
 gi|254834751|gb|EET15060.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA]
 gi|317387283|gb|EFV68158.1| RNA methyltransferase [Bacteroides sp. 3_1_40A]
          Length = 473

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 155/404 (38%), Gaps = 62/404 (15%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIH--YRMRAEFH-------- 50
            L    Y +Q+  K  ++   +      ++P +           YR + EF         
Sbjct: 89  CLP---YTEQIKYKQKQVTDNLTRIGKIELPEILPIMGSEKTEFYRNKLEFTFSNKRWLT 145

Query: 51  -------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
                  + +D  +           + + I+       + N +   +             
Sbjct: 146 EEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDYAYEHNYSFFN 205

Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-- 154
           LR++   L  +   TS + + +V L+  ++++++  +   +L   +  R  QI  +    
Sbjct: 206 LRSQEGMLRNLMIRTSSTGELMV-LLQCKIVEESEMDLMKQLLAFVAERFPQITSLLYVV 264

Query: 155 -------ANKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
                   N  ++ +    D++ E +      L ++    SF Q N+G   + L  V   
Sbjct: 265 NNKCNDTINDLEVMVFKGNDHIFEEM----EGLRFKIGAKSFYQTNSGQAYN-LYKVARN 319

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             G+ G   + +LY G G  +  ++R   +V+ +E    ++E A+ N A N ++N     
Sbjct: 320 FAGLTGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYA 379

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
              K+              ++      R   I  DPPR+G+ D  +  +       I+Y+
Sbjct: 380 GDMKDILT-----------QEFINQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYV 428

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP +  RDLS+L   + +  +   D FP+T H+E  VLL ++
Sbjct: 429 SCNPATQARDLSLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 472


>gi|170681551|ref|YP_001744947.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           SMS-3-5]
 gi|170519269|gb|ACB17447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           SMS-3-5]
          Length = 433

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/357 (23%), Positives = 140/357 (39%), Gaps = 30/357 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70
           Q   K   L ++M   +    ++    P  YR RA   + +      L        + + 
Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+ ++ A +     +R  L  ++ + + S   ++ L +   L   
Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSSV 214

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            RE   R     H+    + L   +   +         E        L        F Q 
Sbjct: 215 DREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE     VE  + 
Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N ++NV     + +E             +         F  + +DP R+G      
Sbjct: 327 NARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E  VL  R
Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431


>gi|315922778|ref|ZP_07919018.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696653|gb|EFS33488.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 472

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +   +   YR + EF              
Sbjct: 91  PYSEQIRYKQKQVEDNLRRIGKIELSEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 211 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  V     G+ 
Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKINAEINDIKNALFYAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 385 ILT-----------QDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 434 TQARDLQLLDEKYKVKAIQPVDMFPHTHHVENVVLLELR 472


>gi|28379606|ref|NP_786498.1| RNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|300769546|ref|ZP_07079432.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308181836|ref|YP_003925964.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|50401757|sp|Q88SY9|Y3226_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_3226
 gi|28272446|emb|CAD65370.1| RNA methyltransferase [Lactobacillus plantarum WCFS1]
 gi|300492961|gb|EFK28143.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308047327|gb|ADN99870.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 481

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 138/389 (35%), Gaps = 47/389 (12%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QLA K D +RQ +  ++            I  + P  YR +A+F +      
Sbjct: 111 LEHLDYPAQLAFKQDLIRQALEKYRPAGYRHYDVRPTIGMTNPYEYRNKAQFQVRLIDGH 170

Query: 58  LYHIMFDQQTKERMRIDYF---MPGSLLINALMIEMMATI--------RLEPLLRAKLFQ 106
           +   ++ + + + + +      MP ++ +   ++  +  +            +++  + +
Sbjct: 171 VAAGLYKENSHDLVDLPTCSVQMPATMTVMRQVVAWLEELQVPIYDEEHNSGIVKTIVVR 230

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTK 159
               T +     +T            +  +++ + L      +Q I          ++T 
Sbjct: 231 EAAATGEIQLVFITNT---PKLPKKHQLLMKIAEKLPMVVSVMQNINAGKTSLIWGDQTT 287

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYC 218
           +   +  + E L      L++     +F Q N      +      A        L++ Y 
Sbjct: 288 LLAGKPTITEEL----DGLVFDLSARAFFQLNPQQTKKLYRLAREALNLAPNETLVDAYS 343

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V  ++    +V  A  N   N + N       ++           
Sbjct: 344 GVGTIGLSLADVAKEVRGMDTIPAAVADANANAQRNQITNAHYEVGEAEVLLPQWLA--- 400

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                      +    + VDPPR+GLD+  +  +   A   ++YISCNP +L +DL  L+
Sbjct: 401 ---------SGFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALT 451

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++ +   D FP T   E  V   ++
Sbjct: 452 RGYQVDYIQSIDMFPQTARCEAVVRFTKR 480


>gi|187731305|ref|YP_001881474.1| 23S rRNA 5-methyluridine methyltransferase [Shigella boydii CDC
           3083-94]
 gi|187428297|gb|ACD07571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella boydii CDC
           3083-94]
          Length = 433

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
             +    + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGLRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSSTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVASALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|189501463|ref|YP_001960933.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides
           BS1]
 gi|189496904|gb|ACE05452.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides
           BS1]
          Length = 480

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/407 (21%), Positives = 150/407 (36%), Gaps = 61/407 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEP--IHYRMRAEFHI----- 51
               +   Y+ QL  K  ++   +     FQ   ++     P  +HYR + EF       
Sbjct: 89  GCKWMHVGYDAQLRYKQKKVHDALVHIGGFQDTAVKPVLPAPDIMHYRNKVEFSCSSKRY 148

Query: 52  ---------WHDGDDLYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL- 99
                      +    + + F       + + I+        +N  +    A    E L 
Sbjct: 149 LMPEELKMERLEKSKDFALGFHAPGNFEKVLEIEACYLAKESMNNALTVTRAFALEEGLS 208

Query: 100 ----------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
                     LR  + +    + + D+ +V L+         +    RL +A+  +K  I
Sbjct: 209 PYAAREHTGFLRNLMLR---YSEERDELMVNLVTSSYDSALMKAYRDRLLEAMPGQKMTI 265

Query: 150 QL--------IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
                     +    K  +      + ERL      L +R   NSF Q N      + + 
Sbjct: 266 VNNVTTRKNTVAVGEKEFVVHGEGVIQERLG----DLQFRISANSFFQTNTKQAEALYDG 321

Query: 202 VLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           ++      + D + +LYCG G  +L LA    + + +EI + S+  A  N + N + N  
Sbjct: 322 IMQMAGLRKDDTVYDLYCGTGTITLYLAERCRQAVGLEIVESSLSDAAENASRNGIANAS 381

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-I 318
             R+  K+F   +    EF             + I  DPPR+G+    +  MV+  P  I
Sbjct: 382 FYRVDLKDFHTLLGTLEEFG----------FPRVIVTDPPRAGMHPKALKTMVRLQPETI 431

Query: 319 LYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           +Y+SCNP +L RD   +    + +E +   D FP+T H+E      R
Sbjct: 432 VYVSCNPANLARDGKEICAANYRLEEVQPVDMFPHTSHIETLACFKR 478


>gi|218701501|ref|YP_002409130.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli IAI39]
 gi|218371487|emb|CAR19323.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli IAI39]
          Length = 433

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 142/357 (39%), Gaps = 30/357 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70
           Q   K   L ++M   +    ++    P  YR RA   + +      L        + + 
Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+ ++ A +     +R  L  ++ + + S   ++ L +   L  A
Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSSA 214

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            RE   +L    H+    + L   +   +         E        L        F Q 
Sbjct: 215 DRE---KLECFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE     VE  + 
Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N ++NV     + +E             +         F  + +DP R+G      
Sbjct: 327 NARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E  VL  R
Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431


>gi|299146119|ref|ZP_07039187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_23]
 gi|298516610|gb|EFI40491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           3_1_23]
          Length = 472

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +   +   YR + EF              
Sbjct: 91  PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 211 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  V     G+ 
Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 385 ILT-----------QDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 434 TQARDLQLLDEKYKVKAIQPVDMFPHTHHVENVVLLELR 472


>gi|326693283|ref|ZP_08230288.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc argentinum KCTC
           3773]
          Length = 458

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 140/386 (36%), Gaps = 45/386 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L+  +Y+ QL  K  +++++             I  ++P +YR +    +      L   
Sbjct: 90  LVNLKYQAQLDLKQTQVQRLFAQRGLDVTVAPTIGMADPTYYRNKTIVPVKWQNGHLTSG 149

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATI-----------RLEPLLRAKLFQIDYL 110
            + + T + + +  +      I+  ++ +   +           R    +R  + +  Y 
Sbjct: 150 FYRRGTHDLVPMTDYFVNDAKIDQAIVVVRDILEKYQISAFDTDRQTGAIRYIMIRRGYY 209

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLD 163
              S + +V L+ +        +    LR  L   K  I                +    
Sbjct: 210 ---SHELMVVLVSNDATIPHEADVITALRAELPELKSLIFNFSPKKDFVLLSPNNRTLWG 266

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGN 222
            D + + L        +    NSF Q N      + +     A       +++ Y G G 
Sbjct: 267 DDAIHDTLL----GYQFVIGPNSFYQVNPQTTEVLYDLAAQKAQLQPTDTVIDAYSGIGT 322

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             + +A    +VL VE+   +V  A++N+  N + N   +   + E            + 
Sbjct: 323 IGITVANRVKQVLGVEVVPGAVADAQHNMRLNGIQNATYLLADAPE------------KF 370

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
           K  +    + + +FVDPPR GL    +          ++YISCNP +L RD + +    +
Sbjct: 371 KIWEAAQLQPEVVFVDPPRRGLTSELIQATVDMGPERLVYISCNPVTLARDAAEIVQKGY 430

Query: 340 TIER-LALFDQFPYTRHMECGVLLVR 364
            IE  +   DQFP T H+E   +  +
Sbjct: 431 QIEGPVQPVDQFPQTSHVESITVFKK 456


>gi|194434671|ref|ZP_03066925.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae
           1012]
 gi|194417068|gb|EDX33183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae
           1012]
 gi|332089082|gb|EGI94192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shigella dysenteriae
           155-74]
          Length = 433

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 143/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V++VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVSVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             + +       F  + +D
Sbjct: 316 GVPALVEKGQQNARLNGLQNVTFYHENLEE------------DVTNQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|237714574|ref|ZP_04545055.1| RNA methyltransferase [Bacteroides sp. D1]
 gi|229445343|gb|EEO51134.1| RNA methyltransferase [Bacteroides sp. D1]
          Length = 462

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +   +   YR + EF              
Sbjct: 81  PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 140

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 141 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 200

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 201 GMLRNMIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 259

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  +     G+ 
Sbjct: 260 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIARNFAGLT 314

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 315 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKD 374

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    + ++       I+Y+SCNP 
Sbjct: 375 MLT-----------QDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPA 423

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 424 TQARDLQLLDEKYKVKAVQPVDMFPHTHHVENVVLLELR 462


>gi|270294142|ref|ZP_06200344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20]
 gi|317478899|ref|ZP_07938047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           4_1_36]
 gi|270275609|gb|EFA21469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20]
 gi|316904933|gb|EFV26739.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           4_1_36]
          Length = 473

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 144/399 (36%), Gaps = 57/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55
            Y +Q+  K  ++   +              +   +   YR + E+   +          
Sbjct: 91  PYSEQIKYKQKQVTDNLTRIGKIELPEISPILGSEKTQFYRNKLEYTFSNKRWLTTEEVQ 150

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
            + +Y  M            + + I+       + N +   +             LR   
Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYQHNYSFINLRTHE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V LI     ++     ++    + D        + +I    N 
Sbjct: 211 GMLRNMIVRTSTTGELMVILICKIEKEEEMALFKQMLQYIADTFPEITSLLYIINNKCND 270

Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T   L       +D++ E +      L ++    SF Q N+    + L  V     G+ G
Sbjct: 271 TITDLEVHTFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARNFAGLTG 325

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  +++H  +V+ +E    ++E A+ N   N + N        K+ 
Sbjct: 326 NELVYDLYTGTGTIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDM 385

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                        +D      R   I  DPPR+G+    V ++       I+Y+SCNP +
Sbjct: 386 LT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             RDL +L   + ++ +   D FP+T H+E  VLL  K 
Sbjct: 435 QARDLQLLDAKYKVKAVQPVDMFPHTHHVENVVLLELKD 473


>gi|95930707|ref|ZP_01313440.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
           684]
 gi|95133187|gb|EAT14853.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
           684]
          Length = 467

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 146/386 (37%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGD 56
              L+   Y  QL  K   +   +  +  + ++ +       E   YR  A+  I     
Sbjct: 91  GCPLIHLGYRHQLDFKRGMIEDALSHYPTLGHVTVHAVWSSEETFGYRTIAKLAIAKVHG 150

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQI--D 108
                ++ + + + + I        LIN +   +   I         P+ R  L +    
Sbjct: 151 KARVGLYKRGSHQVLDIGNCPQQHPLINQIAQALREEIEKQDIYVYNPVSRRGLLRYVAI 210

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--------TKI 160
            ++ Q+++A+VTL+            A  L+  +       Q I  +           K+
Sbjct: 211 RVSPQANKALVTLVTTERNYREMTHLAKWLKKKVPQIIGVHQNINASTGNVIFGSTTVKV 270

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCG 219
               D +D+        +  R    SF Q N      +   V   A  G +   ++LYCG
Sbjct: 271 IGAGDLIDQ-----VGDIRLRLSPTSFFQVNNRQAARIYAQVQSWADLGPKDTAVDLYCG 325

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  ++ LA    +V  +EI + ++  A+     N + N + +   + E    M+RE   
Sbjct: 326 VGGIAMHLATSGAKVTGIEINEDAIFNAKAAAELNELGNCRFIVGDAGEILHDMQRELSP 385

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILS- 336
                        K   V+PPR G  +  +  + Q  P  ++Y+SCNP SL RDL +L+ 
Sbjct: 386 ------------LKVAVVNPPRGGCSEEIIATLGQLRPQTLIYVSCNPYSLGRDLHLLTQ 433

Query: 337 TTHTIERLALFDQFPYTRHMECGVLL 362
              T+E L   D FP T H+E  V L
Sbjct: 434 QGFTVEELQPVDMFPQTAHVESVVRL 459


>gi|255691623|ref|ZP_05415298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
           DSM 17565]
 gi|260622692|gb|EEX45563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
           DSM 17565]
          Length = 472

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 143/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +  ++   YR + EF              
Sbjct: 91  PYSEQIRYKQKQVEDNLKRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTSEEVR 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAIRDYAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ ++   E   +L              L+    +  
Sbjct: 211 GMLRNMIVRTSSTGELMVIVIC-KITEEHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  V     G+ 
Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    + ++       I+Y+SCNP 
Sbjct: 385 MLT-----------QDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 434 TQARDLQLLDKKYKVKAVQPVDMFPHTHHVENVVLLELR 472


>gi|262406440|ref|ZP_06082989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_22]
 gi|294643718|ref|ZP_06721518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
           CC 2a]
 gi|294807326|ref|ZP_06766138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
           xylanisolvens SD CC 1b]
 gi|262355143|gb|EEZ04234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_22]
 gi|292640956|gb|EFF59174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
           CC 2a]
 gi|294445456|gb|EFG14111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 472

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +   +   YR + EF              
Sbjct: 91  PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 211 GMLRNMIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  +     G+ 
Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIARNFAGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    + ++       I+Y+SCNP 
Sbjct: 385 MLT-----------QDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 434 TQARDLQLLDEKYKVKAVQPVDMFPHTHHVENVVLLELR 472


>gi|332664986|ref|YP_004447774.1| RNA methyltransferase, TrmA family [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333800|gb|AEE50901.1| RNA methyltransferase, TrmA family [Haliscomenobacter hydrossis DSM
           1100]
          Length = 470

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 138/395 (34%), Gaps = 51/395 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            Y  QL  K   +   ++     +       +    P +YR + EF         +  + 
Sbjct: 91  DYAAQLRHKAVVVENALIRLGKISVGEWLPILAAESPYYYRNKMEFAFSCKQWLTHEEIN 150

Query: 64  DQQTK--------------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRA 102
            +++               + + I +        N +   +      + L          
Sbjct: 151 SEKSNAADVLGFHPAGGFDKVIDIQHCWLQPDPSNEVRNTVRTIAIAQGLSFYDVKKHEG 210

Query: 103 KLFQIDYLTSQSDQAIVTLIYH-------RLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
            L  +    + + + +  + +        R   +       ++   ++    ++      
Sbjct: 211 FLRNLMLRITTTGETMALIAFGEDNPDLRRPFLEEVERRLPQITTLVYCINTKMNDTIWD 270

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLL 214
                   + Y +E+L      + +R    SF Q N     ++ + V   A      ++ 
Sbjct: 271 LPVHTWSGKGYAEEQLGH----VRFRIGPKSFFQTNTRQGENLYDVVTRFANLQGHENVY 326

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G+  L +A+   +V+ +E    +++ A+ N   N V NVK      +       
Sbjct: 327 DLYTGIGSIGLYVAKDCKQVVGIEEVAAAIDDAKINAEVNGVENVKFYVGDVRAILT--- 383

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
                    +      +   +  DPPR+G+ +  + M+     P I+Y+SCNP +  RDL
Sbjct: 384 --------TEFAAQHGKPDLLITDPPRAGMHEDVINMLLELEAPRIVYVSCNPGTQARDL 435

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             LST + + ++   D FP+T H+E   LL    S
Sbjct: 436 GRLSTKYQVLKVQPVDMFPHTHHIESVALLELNKS 470


>gi|262273704|ref|ZP_06051517.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Grimontia hollisae CIP
           101886]
 gi|262222119|gb|EEY73431.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Grimontia hollisae CIP
           101886]
          Length = 438

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 31/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
              L    +E Q+  K   L Q+M  F   +L       S+P+ YR RA   +       
Sbjct: 90  GCNLQHLSHEAQIEAKQATLSQLMKKFASADLAQDAPVISKPLAYRRRARLSVKVSKQGE 149

Query: 59  YHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
             + F Q+ T + + +      S  +NAL+  + + +      R  +  I+ + S + + 
Sbjct: 150 LEMGFRQRSTNDIVTVTDCPVLSTELNALLPGVYSLLDGLR-GRRIIGHIELVDSDAGRV 208

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           ++     R +     E   RL+         + L     +              ++ G+T
Sbjct: 209 LLV----RAIKLLHDEDISRLKAFAGEHNLVLYLQQEDGEVVRLTGP---QPAYSIGGQT 261

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +      F Q NA IN  M+   L      + D +L+L+CG GNFSL LA     V+ 
Sbjct: 262 LAFE--PQDFIQVNADINEKMIAQALDWLALDESDKVLDLFCGLGNFSLPLAEKVKAVVG 319

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSK-EFTQAMRREREFNRLKDIDIHSYRFKTI 295
           +E  +  V  A  N  +N+  N +    + + + T  +  + ++N+             I
Sbjct: 320 IEGVEEMVARASQNALSNNQANARFYHANLELDVTGTVWGKEQYNK-------------I 366

Query: 296 FVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYT 353
            +DP R+G  +    + Q+    ++Y+SCNP +L RD   +L   + + RL + D FP+T
Sbjct: 367 LLDPARAGALEVMPYVAQSEAERVVYVSCNPATLARDSQVLLENGYQLVRLGMLDMFPHT 426

Query: 354 RHMECGVLLVRK 365
            H+E   L VR+
Sbjct: 427 GHLESMALFVRE 438


>gi|160889893|ref|ZP_02070896.1| hypothetical protein BACUNI_02324 [Bacteroides uniformis ATCC 8492]
 gi|156860885|gb|EDO54316.1| hypothetical protein BACUNI_02324 [Bacteroides uniformis ATCC 8492]
          Length = 473

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 144/399 (36%), Gaps = 57/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55
            Y +Q+  K  ++   +              +   +   YR + E+   +          
Sbjct: 91  PYSEQIKYKQKQVTDNLTRIGKIELPEISPILGSEKAQFYRNKLEYTFSNKRWLTTEEVQ 150

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
            + +Y  M            + + I+       + N +   +             LR   
Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNCIRNAVRDYAYQHNYSFINLRTHE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V LI     ++     ++    + D        + +I    N 
Sbjct: 211 GMLRNMIVRTSTTGELMVILICKIEKEEEMALFKQMLQYIADTFPEITSLLYIINNKCND 270

Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T   L       +D++ E +      L ++    SF Q N+    + L  V     G+ G
Sbjct: 271 TITDLEVHTFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARNFAGLTG 325

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  +++H  +V+ +E    ++E A+ N   N + N        K+ 
Sbjct: 326 NELVYDLYTGTGTIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDM 385

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                        +D      R   I  DPPR+G+    V ++       I+Y+SCNP +
Sbjct: 386 LT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             RDL +L   + ++ +   D FP+T H+E  VLL  K 
Sbjct: 435 QARDLQLLDAKYKVKAVQPVDMFPHTHHVENVVLLELKD 473


>gi|313105817|ref|ZP_07792080.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016]
 gi|310878582|gb|EFQ37176.1| putative RNA methyltransferase [Pseudomonas aeruginosa 39016]
          Length = 450

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 139/374 (37%), Gaps = 36/374 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             TL   ++ +QLA K   L++ +  F     +            YR RA   +  D   
Sbjct: 99  GCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARA 158

Query: 58  LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                      ++E +  D  +   P    I   +  ++   R    +          + 
Sbjct: 159 RRLDVGFRASASQEIVPFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTAS- 217

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
               A++      L+D    E   RL     A + Q+ L G      +    + +   L+
Sbjct: 218 ----ALLLRHTTALVD----EDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAE-LGYSLS 268

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
               TL YR     F Q NA +N  M+   L        + +L+L+CG GNFSL LAR  
Sbjct: 269 DWQLTLAYR--PGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRV 326

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV+ VE     VE A  N  AN + N    +    +             L +       
Sbjct: 327 ARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKA------------LAEAPWAEQG 374

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
           F  + +DPPR G  +A   M       ++Y+SCNP +L RD   ++   + ++R  + D 
Sbjct: 375 FTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434

Query: 350 FPYTRHMECGVLLV 363
           FP T H+E   L  
Sbjct: 435 FPQTAHVEAMALFE 448


>gi|229514078|ref|ZP_04403540.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TMA
           21]
 gi|229349259|gb|EEO14216.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae TMA
           21]
          Length = 440

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 153/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + +         +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|254557749|ref|YP_003064166.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
 gi|254046676|gb|ACT63469.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
          Length = 481

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 136/385 (35%), Gaps = 39/385 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QLA K D +RQ +  ++            I  + P  YR +A+F +      
Sbjct: 111 LEHLDYPAQLAFKQDLIRQALEKYRPAGYRHYDVRPTIGMTNPYEYRNKAQFQVRLIDGH 170

Query: 58  LYHIMFDQQTKERMRIDYF---MPGSLLINALMIEMMATI--------RLEPLLRAKLFQ 106
           +   ++ + + + + +      MP ++ +   ++  +  +            +++  + +
Sbjct: 171 VAAGLYKENSHDLVDLPTCSVQMPATMTVMRQVVAWLEELQVPIYDEEHNSGIVKTIVVR 230

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
               T +     +T            +  +++ + L      +Q I     + I  D+  
Sbjct: 231 EAAATGEIQLVFITNT---PKLPKKHQLLMKIAEKLPMVVSVMQNINAGKTSLIWGDQTT 287

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
                  +T     L++     +F Q N      +      A        L++ Y G G 
Sbjct: 288 SLAGKPTITEELDGLVFDLSARAFFQLNPQQTKKLYRLAREALNLAPNETLVDAYSGVGT 347

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA     V  ++    +V  A  N   N + N       ++               
Sbjct: 348 IGLSLADVAKEVRGMDTIPAAVADANANAQRNQITNAHYEVGEAEVLLPQWLA------- 400

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHT 340
                  +    + VDPPR+GLD+  +  +   A   ++YISCNP +L +DL  L+  + 
Sbjct: 401 -----SGFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALTRGYQ 455

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           ++ +   D FP T   E  V   ++
Sbjct: 456 VDYIQSIDMFPQTARCEAVVRFTKR 480


>gi|282880269|ref|ZP_06288985.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305864|gb|EFA97908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis
           CRIS 5C-B1]
          Length = 472

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 145/400 (36%), Gaps = 61/400 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEF-------------- 49
            YE QL  K  ++   +      +L  FR      +   YR + EF              
Sbjct: 91  PYEDQLKAKQKQVHDQLTRIGKVDLPDFRPILGSEKIYEYRNKLEFSCSNKRWLTKEEVS 150

Query: 50  ---HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------- 99
               + H     +HI       +   I+       L N +  E+        +       
Sbjct: 151 SGVQLDHKNAIGFHITGAFD--KIYPIEKCWLMDDLCNQIRNEIRNYALNNGISFFDVKE 208

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
               L  I    S + + +V L+  +  +    + A  L   +  R  QI  +   N  K
Sbjct: 209 QTGLLRDIMIRNSSTGEWMV-LVQFKFQEQGDEQRAHDLLQHIGDRFPQITSLLYVNNQK 267

Query: 160 -----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                      +   +D++ E +      L ++    SF Q N     H+ E      + 
Sbjct: 268 CNDTFSDQTIEVFKGKDHITEMM----DKLQFKVAAKSFYQTNTQQAFHLYEVARQLAQL 323

Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L+ +LY G G  +  +ARH  +V+ +E  + ++  A+ N   N + N        K
Sbjct: 324 TGKELVYDLYTGTGTIANFVARHAQQVIGIEYVEDAIADAKANSKCNGIENTLFYAGDMK 383

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNP 325
           +               +      +   I  DPPR+G+    +  +   A   I+Y+SCNP
Sbjct: 384 DILTD-----------EFVKQHGKPDVIITDPPRAGMHPDVIQTILRAAPKRIVYVSCNP 432

Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +  RDL +L+  + +E +   D FP+T H+E  VLL ++
Sbjct: 433 ATQARDLEVLNEQYRVEEVQPVDMFPHTPHVENVVLLEQR 472


>gi|283769200|ref|ZP_06342104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
 gi|283104176|gb|EFC05555.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
          Length = 442

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 146/379 (38%), Gaps = 33/379 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGDD 57
              L    Y++QL+ K + ++   L  Q+     +  +   +   YR + +  I      
Sbjct: 79  GCQLQHMAYQEQLSLKQEIVQIHFLRHQLDLNRIHPILPSPKQERYRNKVQVPIQEKDGL 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                +   + + +  +  M  +   N +   +   +    L     +       Q ++ 
Sbjct: 139 AQLGFYRNHSHDVVVYEDCMVETEESNQITHFVKRFLNQHHLTSNFRYLFIRHIHQRNEV 198

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--------YVDE 169
           +V  I      +  ++ A+ L             +    +T + LD          +++E
Sbjct: 199 MVMPIVREYPFEKSKKLALELVKEFPNI-TSFSYLKNPKETNVILDGPIFEVIGPLFLEE 257

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228
            L      + ++    SF Q N      +    L  A    +  +++LYCG G   ++ A
Sbjct: 258 SLL----GMNFQLSAKSFFQVNPYATEVLYVKALELADISKEDTVVDLYCGTGTIGILAA 313

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V+ +EI   +++ A+ N   N  +N++   M +++  + +   +E          
Sbjct: 314 KIAKKVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKKIVETKE---------- 363

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLA 345
                 + VDPPR G    T+  +Q      ++YISC+P +L RDL  L +    +E + 
Sbjct: 364 --SIDVVIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVETVQ 421

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  L+ R
Sbjct: 422 PVDLFPQTVHVECIALIQR 440


>gi|15832899|ref|NP_311672.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|13363116|dbj|BAB37068.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
          Length = 433

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
           S        + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  SCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLEVEPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNCLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|189424927|ref|YP_001952104.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ]
 gi|189421186|gb|ACD95584.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ]
          Length = 485

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 146/388 (37%), Gaps = 38/388 (9%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHDG 55
           +   L+  +Y +QL  K D ++     +      +          + YR  A+  +    
Sbjct: 108 LGCPLIAMRYGEQLRWKQDLVQAAFNQYPSLKHIVVPRLLTPERRLGYRTTAKLAVAGTH 167

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKL 104
            D Y  ++ + + + + ++       +IN            L + +        +LR  +
Sbjct: 168 ADPYIGIYRRASHDVVDLEDCPLHHPMINTVIRVVREGIRKLKVPVYQEKNKSGILRYLV 227

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            ++   +  S++ +VT +  R   +     A  L++ +       Q +  +    I    
Sbjct: 228 VRV---SESSNEVMVTFVTARRAFNEIHHLARFLQEKVPQVAVVCQNVNSSEGNVIFGAH 284

Query: 165 DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGN 220
           D+     + +      +       SF Q        + E             +L+LYCG 
Sbjct: 285 DHFLTRQQTIQERIGQVELLVSPRSFLQAQNDGARLLYETARDWAGLDGSQQVLDLYCGI 344

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +L LA    +VL VE+ K +V  A+ N   N+  N +                    
Sbjct: 345 GGIALTLAPVARQVLGVELNKEAVADAKRNARLNNARNCRFEAGDV------------LE 392

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-T 337
            L D+     RF  I ++PPR G D   +  V   A   I+Y+SC+P +L RDL IL+  
Sbjct: 393 LLDDLLEDELRFSCIVLNPPRKGCDREVLDKVAEFAPERIVYVSCSPQTLARDLDILATK 452

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
               E++   + FP T H+E   LL+RK
Sbjct: 453 GFHCEKVQPVEMFPQTPHVENVALLLRK 480


>gi|15803306|ref|NP_289339.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 EDL933]
 gi|168750996|ref|ZP_02776018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758476|ref|ZP_02783483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764498|ref|ZP_02789505.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766753|ref|ZP_02791760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4486]
 gi|168778773|ref|ZP_02803780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788043|ref|ZP_02813050.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC869]
 gi|168802534|ref|ZP_02827541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC508]
 gi|195936387|ref|ZP_03081769.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809717|ref|ZP_03252054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813103|ref|ZP_03254432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820580|ref|ZP_03260900.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399664|ref|YP_002272250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4115]
 gi|217326646|ref|ZP_03442729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. TW14588]
 gi|254794727|ref|YP_003079564.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. TW14359]
 gi|261226084|ref|ZP_05940365.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261256661|ref|ZP_05949194.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284114|ref|YP_003500932.1| 23S rRNA (uracil-5-)-methyltransferase rumA (23S rRNA(M-
           5-U1939)-methyltransferase) [Escherichia coli O55:H7
           str. CB9615]
 gi|20140032|sp|Q8XED8|RUMA_ECO57 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|12517257|gb|AAG57898.1|AE005506_6 putative enzyme [Escherichia coli O157:H7 str. EDL933]
 gi|188014871|gb|EDU52993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4113]
 gi|189003420|gb|EDU72406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354711|gb|EDU73130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363623|gb|EDU82042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365488|gb|EDU83904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372225|gb|EDU90641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC869]
 gi|189375496|gb|EDU93912.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC508]
 gi|208729518|gb|EDZ79119.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734380|gb|EDZ83067.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740703|gb|EDZ88385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209161064|gb|ACI38497.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209761438|gb|ACI79031.1| putative enzyme [Escherichia coli]
 gi|209761440|gb|ACI79032.1| putative enzyme [Escherichia coli]
 gi|209761442|gb|ACI79033.1| putative enzyme [Escherichia coli]
 gi|209761444|gb|ACI79034.1| putative enzyme [Escherichia coli]
 gi|209761446|gb|ACI79035.1| putative enzyme [Escherichia coli]
 gi|217319013|gb|EEC27438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594127|gb|ACT73488.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|290763987|gb|ADD57948.1| 23S rRNA (uracil-5-)-methyltransferase rumA (23S rRNA(M-
           5-U1939)-methyltransferase) [Escherichia coli O55:H7
           str. CB9615]
 gi|320189118|gb|EFW63777.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640433|gb|EFX09972.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H7 str.
           G5101]
 gi|320645680|gb|EFX14665.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H- str.
           493-89]
 gi|320650980|gb|EFX19420.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H- str.
           H 2687]
 gi|320656476|gb|EFX24372.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662372|gb|EFX29769.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667070|gb|EFX34033.1| 23S rRNA m(5)U1939 methyltransferase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326339143|gb|EGD62958.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. 1044]
 gi|326342974|gb|EGD66742.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia coli
           O157:H7 str. 1125]
          Length = 433

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 141/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLEVEPEDRVLDLFCGMGNFTLPLATQAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  + N   N + NV     + +E             +         F  + +D
Sbjct: 316 GVPALVEKGQQNARLNCLQNVTFYHENLEE------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFSR 431


>gi|326804225|ref|YP_004322043.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650285|gb|AEA00468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 465

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 88/388 (22%), Positives = 154/388 (39%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57
              L    Y  QLA K    +  +         +       +P HYR + E     +GD 
Sbjct: 93  GAPLEYMNYADQLAYKRALTQGFLADQGFDPSLVGEVWGMDDPYHYRNKLELSFSINGDL 152

Query: 58  LYHIMFDQQT-----KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLT 111
            + +  DQ       K  +  + FM     + A      +A    +         +    
Sbjct: 153 GFFVQGDQYQIVDWQKNILAPEIFMILKEEVQAWQKAWNLAGYEKQSKQGLLRQLLLRQG 212

Query: 112 SQSDQAIVTLIYHR---LLDDAWRECAIRLRDALHARKYQIQLIGRA-------NKTKIC 161
            QS + +V +        LD    E  I+   A    K  + +   A       ++ ++ 
Sbjct: 213 HQSGEVMVAIFAQEEAAKLDPGVIEDLIQRMQAYPEIKSLMWIKNTAIADRMGADQVEVL 272

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
             RDY+ + L        YR   ++F QPN      M++         Q   +++L+CG 
Sbjct: 273 AGRDYICDELA----GFNYRLYFDTFFQPNPVQAQRMIDLACDWADLDQDSLVIDLFCGV 328

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G FSL LA+    ++ +EI + S+E+A+ N   N + N   +   ++             
Sbjct: 329 GTFSLPLAKRAKALVGIEIVEQSIESAKRNARDNGIENAHFIARDARH------------ 376

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST- 337
            L +I+    +   + +DPPR+G     +  +       I+Y+SCNP +L +DL+ L   
Sbjct: 377 GLAEIEAEWGQADLLLLDPPRNGAGGKIMRRIGRLGLEKIIYVSCNPKTLAQDLAWLRDF 436

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + I +  L DQFP+T+H+E  VL+ +K
Sbjct: 437 GYEISKFQLVDQFPHTQHVEAVVLIEKK 464


>gi|323966763|gb|EGB62194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli M863]
 gi|327251523|gb|EGE63209.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           STEC_7v]
          Length = 433

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 30/357 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70
           Q   K   L ++M   +    ++    P  YR RA   + +      L        + + 
Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+ ++ A +     +R  L  ++ + + S   ++ L +   L  A
Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTASLSSA 214

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            RE   R     H+    + L   +   +         E        L        F Q 
Sbjct: 215 DREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYESNGLRLTFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE     VE  + 
Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N ++NV     + +E             +         F  + +DP R+G      
Sbjct: 327 NARLNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E  VL  R
Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431


>gi|311278256|ref|YP_003940487.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1]
 gi|308747451|gb|ADO47203.1| RNA methyltransferase, TrmA family [Enterobacter cloacae SCF1]
          Length = 433

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 84/358 (23%), Positives = 147/358 (41%), Gaps = 29/358 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK--ER 70
           Q   K   L ++M   +    ++  +EP  YR RA   + +        M  ++    + 
Sbjct: 100 QQRSKQAALARLM---KHDVDEVIAAEPWGYRRRARLSLSYQPKSQQLQMGFRKANAADI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + I         + AL+  +   +      R  L  ++ + + +   +V  + H     A
Sbjct: 157 IDIVQCPVLVPALEALLPAVRECLSGLKA-RQHLGHVELVLADNGPLMV--LRHTAALPA 213

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                 +L    H+ +  + L  ++      L+R   ++    +   L        F Q 
Sbjct: 214 T--DREKLEQFSHSHQLALYLAPQSE----VLERVSGEDAPWYSADGLRLTFSPRDFIQV 267

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N G+N  M+   +        D +L+L+CG GNF+L LAR    V+ VE     VE A+ 
Sbjct: 268 NDGVNQKMVATAIDWLDIQPDDRVLDLFCGMGNFTLPLARRAASVVGVEGVPALVEKAQQ 327

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N A N ++NV     + +E                       F  I +DP R+G      
Sbjct: 328 NAARNGLHNVTFFHENLEEDVTRQA------------WAKNGFDKILLDPARAGASGVMQ 375

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +V+  P  ++Y+SCNP +L RD  ++L+  + I+R+A+ D FP+T H+E  VL   K
Sbjct: 376 HVVKLAPRRVVYVSCNPATLARDSEALLAAGYQIQRMAMLDMFPHTGHLESIVLFEHK 433


>gi|86146353|ref|ZP_01064677.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222]
 gi|85835832|gb|EAQ53966.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio sp. MED222]
          Length = 439

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 145/371 (39%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L    Y  Q+  K   L  +M  +Q  N ++ +    +   YR RA   ++ D    
Sbjct: 90  GCHLQHLGYSSQVEHKSQSLTHLMSKYQTANTEVAQPIVGDDTGYRRRARISLFVDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K+   I         +N L+ ++ + +     L   L  ++ +   +  
Sbjct: 150 QLQFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLLNTFSSL-TSLGHVELVLGDTGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +V     R L     +    L          +  +   +K    +         +  G 
Sbjct: 209 VMVL----RHLKPLVEKDEQALMTLAKEEGATLYSMPETDKLVRLVGDS---PSYSETGV 261

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
           TL +    N F Q N  +N  M+   +   +    + +L+L+CG GNFSL +A+    V+
Sbjct: 262 TLPFE--PNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDLFCGLGNFSLPIAQQSAFVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     V+ A  N A N ++N +  + + +E   +    +E            +F  +
Sbjct: 320 GVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLSSQLWAKE------------KFDKV 367

Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
            +DP R+G       +       ++Y+SCNP +L RD   L    + + +L + D FP+T
Sbjct: 368 LLDPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L ++
Sbjct: 428 SHLESMALFIK 438


>gi|218710562|ref|YP_002418183.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio splendidus
           LGP32]
 gi|254766924|sp|B7VK72|RUMA_VIBSL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|218323581|emb|CAV19816.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio splendidus
           LGP32]
          Length = 442

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 147/371 (39%), Gaps = 27/371 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDL 58
              L    Y  Q+  K   L  +M  +Q  N ++      +   YR RA   ++ D    
Sbjct: 90  GCHLQHLGYSSQVEHKSQSLTHLMSKYQTANTEVALPIVGDESGYRRRARISLFVDKKTQ 149

Query: 59  Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                   +Q+K+   I         +N L+ ++ + +     L   L  ++ +   +  
Sbjct: 150 LLQFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLLNTFSSL-TSLGHVELVLGDTGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +V L + + L +   +  + L          +  +   +K    +         +  G 
Sbjct: 209 VMV-LRHLKPLVEKDEQALMTLMTLAKEEGATLYSMPETDKLVRLVGDA---PSYSETGV 264

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
           TL +    N F Q N  +N  M+   +   +    + +L+L+CG GNFSL +A+    V+
Sbjct: 265 TLPFE--PNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDLFCGLGNFSLPIAQQSAFVV 322

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     V+ A  N A N ++N +  + + +E   +    +E            +F  +
Sbjct: 323 GVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLSSQLWAKE------------KFDKV 370

Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
            +DP R+G       +       ++Y+SCNP +L RD   L    + + +L + D FP+T
Sbjct: 371 LLDPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLDMFPHT 430

Query: 354 RHMECGVLLVR 364
            H+E   L ++
Sbjct: 431 SHLESMALFIK 441


>gi|15642448|ref|NP_232081.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121591386|ref|ZP_01678669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           2740-80]
 gi|153819816|ref|ZP_01972483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae NCTC
           8457]
 gi|227082573|ref|YP_002811124.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae M66-2]
 gi|229507488|ref|ZP_04396993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae BX
           330286]
 gi|229512317|ref|ZP_04401796.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae B33]
 gi|229519453|ref|ZP_04408896.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC9]
 gi|229606993|ref|YP_002877641.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio cholerae
           MJ-1236]
 gi|254849576|ref|ZP_05238926.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Vibrio cholerae MO10]
 gi|255746877|ref|ZP_05420822.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholera CIRS
           101]
 gi|262162042|ref|ZP_06031058.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae INDRE
           91/1]
 gi|298500191|ref|ZP_07009996.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MAK
           757]
 gi|20140289|sp|Q9KPC1|RUMA_VIBCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|254766923|sp|C3LQZ5|RUMA_VIBCM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|9657029|gb|AAF95594.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121546765|gb|EAX56937.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae
           2740-80]
 gi|126509635|gb|EAZ72229.1| 23S rRNA  (uracil-5-)-methyltransferase RumA [Vibrio cholerae NCTC
           8457]
 gi|227010461|gb|ACP06673.1| putative RNA methyltransferase,TrmA family [Vibrio cholerae M66-2]
 gi|229344142|gb|EEO09117.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae RC9]
 gi|229352282|gb|EEO17223.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae B33]
 gi|229354993|gb|EEO19914.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae BX
           330286]
 gi|229369648|gb|ACQ60071.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae
           MJ-1236]
 gi|254845281|gb|EET23695.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Vibrio cholerae MO10]
 gi|255735279|gb|EET90679.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholera CIRS
           101]
 gi|262028291|gb|EEY46948.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio cholerae INDRE
           91/1]
 gi|297540884|gb|EFH76938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio cholerae MAK
           757]
          Length = 440

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 154/373 (41%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + + +       +NAL+ ++ A +  E     +L  ++ +   + +
Sbjct: 150 QLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLS-EWSQPERLGHVELVKGDNTR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +   RL D     +  + L+  A + +       Y +E      
Sbjct: 209 VLVL----RHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + + F Q N  +N HM+   L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A +N   N +NNV   + + ++             +        +F  
Sbjct: 319 VGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|189485521|ref|YP_001956462.1| putative RNA methyltransferase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287480|dbj|BAG14001.1| putative RNA methyltransferase [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 449

 Score =  239 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 139/383 (36%), Gaps = 36/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
             +     YE Q+  K + + +++    V   +I  S    HYR + EF  +++      
Sbjct: 81  GCSFQNISYESQIKYKQEYISELLNFAGVKISKILISPQIWHYRNKMEFSFFNNKGIADL 140

Query: 61  IMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEP------LLRAKLFQIDYLTSQ 113
            +  +      + +            ++  +                    F+   L   
Sbjct: 141 GLHCKGMFNRYVSVPPCFIADKGFLQVVETVKRFANGNNFSVYNNKTHEGFFRHLVLRKA 200

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--------DRD 165
            +     +     + D        L   L      I       K+   L         + 
Sbjct: 201 GNNNQFLINVITNVVDCESVFLEPLIKELSEFSCSIYWTSNGRKSDAVLADRLTLMCGKP 260

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           ++ ERL + G+   +     SF Q N+     +   +L      +  +L +LYCG G   
Sbjct: 261 FITERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILRLLNPSKYTVLLDLYCGTGAIG 320

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           + +A +  RV+ VE    +++ A+ N  AN+V N +     ++++ +  +          
Sbjct: 321 ISMAHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASDAEDWIKENKS--------- 371

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST--THT 340
                  F  + VDPPRSGL    +  +       I+Y+SCNP +L RDL +++      
Sbjct: 372 ------CFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARDLQLITENSKCK 425

Query: 341 IERLALFDQFPYTRHMECGVLLV 363
           I+ +   D FP T H+E  VLL 
Sbjct: 426 IKEIIPVDMFPQTYHIETVVLLE 448


>gi|289422763|ref|ZP_06424602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           anaerobius 653-L]
 gi|289156818|gb|EFD05444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           anaerobius 653-L]
          Length = 452

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 146/393 (37%), Gaps = 48/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHI---WHD 54
             ++L   YE+QL  K D++  +     +   +     P      YR + E+     + D
Sbjct: 79  GCSILSIPYEKQLEIKKDQVLDLFDKAGLKEYEFVGINPSPSSVAYRNKMEYTFGDEYKD 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAK 103
           G     +    +  + + +D           +M                +   +  LR  
Sbjct: 139 GPLSLGMHKVGRFIDIVTVDDCRIVDQDFKTIMTRTRDFFEEKGLPYYRSFNHQGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT        D ++E  +       L   LH     +    + ++
Sbjct: 199 VVRKGENTGELMVNIVTSSQLDYNMDEYKEFLLGLDLDSELVGVLHTINDGLADAVQCDE 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML--EWVLAATKGIQGDLLE 215
            +I   RDY  E +      L ++    SF Q N      +       A  +G    + +
Sbjct: 259 MRILYGRDYFYEEVL----GLRFKVSPFSFFQTNTKGAEALYTIARKFAGDRGHGKVVFD 314

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G    ++A+   +V  +E+ + +V AA  N   N+++N + +     +   ++  
Sbjct: 315 LYSGTGTIGQLMAKTAKKVYGIELVEEAVVAANQNAVLNNLDNCEFIAGDVAKVVSSL-- 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
                          + + I VDPPR+G+    V  +       I+Y+SCNP SL  ++ 
Sbjct: 373 -------------PEKPELIIVDPPRAGILGNGVKDIAEFGAKEIVYVSCNPRSLVENVV 419

Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
                 + +++L L D FP T H E  VL+ RK
Sbjct: 420 EFEDRGYKLDKLELMDLFPNTPHCESVVLMTRK 452


>gi|288925116|ref|ZP_06419052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17]
 gi|288338306|gb|EFC76656.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17]
          Length = 480

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 75/398 (18%), Positives = 143/398 (35%), Gaps = 57/398 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDG-------- 55
            Y++Q+  K  ++   +       L  FR      +   YR + EF   +          
Sbjct: 99  PYQEQIKAKQQQVYDQLSRIGKVELPEFRPIMGSVKTQEYRNKIEFGCSNKRWLTKEEVA 158

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LR 101
               +  M            +   I+       L N +   +        +         
Sbjct: 159 SGTEFTNMNAIGFHITGAFDKIYPIEKCGLMDNLNNRIRNAIRDFAFATEISFYDIRQQH 218

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-- 159
             L  +    S + + +V + +H   ++     A+ L   +  +  +I  +   +  K  
Sbjct: 219 GLLRDVMIRNSNTGEWMVLVQFHYD-EEGDEAKALALLQHIGDKFPEITSLLYVDNQKCN 277

Query: 160 ---------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +    D++ E +      L ++    SF Q N     H+       ++   
Sbjct: 278 DTFGDLPISVYKGNDHIFEVM----EGLRFKVGPKSFYQTNTEQAYHLYSVAREFSQLTG 333

Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L+ +LY G G  +  +AR   +V+ +E    ++E A+ N   N ++N        K+ 
Sbjct: 334 DELVYDLYTGTGTIANFVAREAKQVIGIEYVPEAIEDAKVNSEINGIDNTLFYAGDMKDI 393

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                         +      R   I  DPPR+G+    V  +   A   I+Y+SCNP +
Sbjct: 394 LND-----------EFIRQHGRPDVIITDPPRAGMHADVVNTILHAAPRRIVYVSCNPAT 442

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL++L   + +E +   D FP+T H+E  VLL+R+
Sbjct: 443 QARDLNLLDVDYRVEEVQPVDMFPHTPHVENVVLLIRR 480


>gi|323978604|gb|EGB73686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli
           TW10509]
          Length = 433

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 141/357 (39%), Gaps = 30/357 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70
           Q   K   L ++M   +    ++    P  YR RA   + +      L        + + 
Sbjct: 100 QQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+ ++ A +     +R  L  ++ + + S   ++ L +   L  A
Sbjct: 157 VDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSSA 214

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            RE   R     H+    + L   +   +         E        L        F Q 
Sbjct: 215 DREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           NAG+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE     VE  + 
Sbjct: 267 NAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N ++NV     + +E             +         F  + +DP R+G      
Sbjct: 327 NARLNSLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +++  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E  VL  R
Sbjct: 375 QIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431


>gi|149372775|ref|ZP_01891796.1| putative RNA methyltransferase [unidentified eubacterium SCB49]
 gi|149354472|gb|EDM43037.1| putative RNA methyltransferase [unidentified eubacterium SCB49]
          Length = 469

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 137/391 (35%), Gaps = 49/391 (12%)

Query: 10  YEQQLAEKVDRLRQ---MMLAFQVPNLQIFRS--EPIHYRMRAEFHIW------------ 52
           YE QL  K   +      +   ++P +   ++  E   YR + EF               
Sbjct: 93  YEHQLFYKQKEVVNNLTRLGKIELPEITPIKAANEQYFYRNKMEFSFSDNKWLTLEQIQS 152

Query: 53  ---HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALM-------IEMMATIRLEPLLRA 102
               D  +           + + ++         NA+         E+            
Sbjct: 153 DAIIDNKNALGFHIPGMWDKILDLNKCYLQQDPSNAIRDFVKAKAQELDIPFYNVRNQTG 212

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            L  +   TS + Q +V +   +  D   R   +            +Q +          
Sbjct: 213 ILRTLMIRTSSTGQIMVLVQMFK--DTKSRIDLLDAIQEKFPEITSLQYVINNKGNDTIY 270

Query: 163 DRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
           D+D      ++ +      L ++    SF Q N+      L  +     G+ G+  + +L
Sbjct: 271 DQDVLCYAGEDHIMEEMEGLTFKINAKSFYQTNSEQAFE-LYKITRDFAGLTGEELVYDL 329

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  +  +A+   +V+ VE    ++ AA+ N   N++ N +      K+        
Sbjct: 330 YTGTGTIAQFVAKKAKKVIGVESVPDAIIAAKENAERNNITNAEFYVGDMKDVFN----- 384

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334
                 +D      +   +  DPPR G+    V  +     P I+Y+SCN  +  RDL++
Sbjct: 385 ------EDFVNTHGKADIVITDPPRDGMHKDVVQQLINLNAPKIVYVSCNSATQARDLAL 438

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L   + + ++   D FP T H+E  VLL R+
Sbjct: 439 LDENYKVTKVQPVDMFPQTHHVENVVLLERR 469


>gi|301163521|emb|CBW23072.1| putative RNA methyltransferase [Bacteroides fragilis 638R]
          Length = 472

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 143/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +  ++   YR + EF              
Sbjct: 91  PYAEQIKYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVK 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR++ 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTIRDYAYEHNYSFINLRSQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS S + +V LI  ++ ++   +   +L              L+    +  
Sbjct: 211 GMLRNMIVRTSSSGELMVILIC-KITEEHEMDLFKQLLQYVADQFPEITSLLYIINNKCN 269

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +    D++ E +      L ++    SF Q N+    + L  V     G+ 
Sbjct: 270 DTINDLDVHVFRGNDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARDFAGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           GD  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 325 GDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 385 ILT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  K
Sbjct: 434 TQARDLQLLDVKYRVKAVQPVDMFPHTHHVENVVLLELK 472


>gi|317154458|ref|YP_004122506.1| TrmA family RNA methyltransferase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944709|gb|ADU63760.1| RNA methyltransferase, TrmA family [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 465

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 81/394 (20%), Positives = 146/394 (37%), Gaps = 40/394 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y +QLA+K  ++   +           +      +   YR + EF      D
Sbjct: 81  GCALQHLAYPEQLAQKNAQVAAALTRIGGVQDLVMDAPAGSPDIWGYRNKMEFAFEQRED 140

Query: 57  DLYHIMF---DQQTKE---RMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKL 104
            L+  +     + +      + ID     +     +M+ +             P   +  
Sbjct: 141 GLHLGLREPTPEGSNRPGPVLDIDQCHLCAAWDVEIMVAVRQFCAATGVPAYNPATESGF 200

Query: 105 FQIDYLT-SQSDQAIVTLIYHR------LLDDAWRECAIR---LRDALHARKYQIQLIGR 154
           ++   +  + + + +V LI  R      L+ D       R   L   +H+ + +   +  
Sbjct: 201 WRHLVIRHAAAGEVMVHLITARDERKDNLIKDMAELFLQRFPELASFVHSTRVKRTTVAF 260

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
             K    L   +V+ERL    R + YR   N+F Q N G    +   V          +L
Sbjct: 261 GEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGTVAEFCALSDTHVL 320

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G   + LA    RV+  E ++ +V  AR +   N + N   V  S ++     
Sbjct: 321 LDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGLTNCSFVSGSLEQGIPGF 380

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD 331
               +      + +             RSG+ + T   + A   P I+ +SC+P +L RD
Sbjct: 381 AGSGDQAVPDVVVVDPP----------RSGMHEKTAEALLALGAPRIVAVSCDPATLARD 430

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  L+  + + R+   D FP+T H+E   LL  +
Sbjct: 431 VKRLADRYHVTRVRAVDMFPHTHHIETVALLELR 464


>gi|329955143|ref|ZP_08296100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT
           12056]
 gi|328526142|gb|EGF53161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT
           12056]
          Length = 475

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 144/398 (36%), Gaps = 57/398 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55
            Y +Q+  K  ++   +              +   +   YR + E+   +          
Sbjct: 91  PYSEQIKYKQKQVTDNLTRIGKVELPEISPILGSEKTEFYRNKLEYTFSNKRWLTAEEVR 150

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
            + +Y  M            + + I+       + N +   +             LR + 
Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V LI     D+     ++    + D        + +I    N 
Sbjct: 211 GMLRNMIVRTSSTGELMVILICKIEKDEEMALFKQLLQYVADTFPEITSLLYIINNKCND 270

Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T   L       +D++ E +      L ++    SF Q N+    + L  V     G+ G
Sbjct: 271 TITDLDVHTFKGKDHIFEEM----EGLRFKVGPKSFYQTNSKQAYN-LYKVARNFAGLTG 325

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  +++   +V+ +E    ++E A+ N   N + N        K+ 
Sbjct: 326 NELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDM 385

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                        +D      R   I  DPPR+G+    V ++       I+Y+SCNP +
Sbjct: 386 LT-----------QDFINEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL +L   + ++ +   D FP+T H+E  VLL  K
Sbjct: 435 QARDLQLLDAKYKVKAVQPVDMFPHTHHVENVVLLELK 472


>gi|298481085|ref|ZP_06999279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22]
 gi|298272659|gb|EFI14226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22]
          Length = 472

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 143/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +   +   YR + EF              
Sbjct: 91  PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 211 GMLRNMIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 269

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  +     G+ 
Sbjct: 270 DTINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIARNFAGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 325 GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    + ++       I+Y+SCNP 
Sbjct: 385 MLT-----------QDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L+  + ++ +   D FP+T H+E  VLL  +
Sbjct: 434 TQARDLQLLNEKYKVKAVQPVDMFPHTHHVENVVLLKLR 472


>gi|218547699|ref|YP_002381490.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|218355240|emb|CAQ87847.1| 23S rRNA (uracil-5)-methyltransferase [Escherichia fergusonii ATCC
           35469]
 gi|324111189|gb|EGC05172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia fergusonii
           B253]
          Length = 432

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 86/368 (23%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
                    E Q   K   L ++M    V +  I    P  YR RA   + +        
Sbjct: 89  GCQQQHASVELQQQSKSAALARLM-KHDVAD--IIADAPWGYRRRARLSLNYLAKTQQLQ 145

Query: 62  MFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           M  ++  + + + +         I AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAASSDIVDVKQCPILVPQIEALLPKVRACLMSLQTVRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H  +  + L   +   +  +      E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HCERLSLFLAPDSEILEPLVG-----ETPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q N G+N  M+   +       Q  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LMFSPRDFIQVNDGVNQKMVAQAIEWLDIQPQDRVLDLFCGMGNFTLALATRAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  R N   N + NV     + ++             +         F  + +D
Sbjct: 316 GVPALVEKGRENARENGLANVTFYHENLED------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  ++Y+SCNP +L RD   L +  +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRVVYVSCNPATLARDSEALINAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFER 431


>gi|242051741|ref|XP_002455016.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]
 gi|241926991|gb|EES00136.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]
          Length = 558

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 145/438 (33%), Gaps = 93/438 (21%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQM---MLAFQVPNLQIFRSEP-------------IHYRM 45
                   Y  Q+  K  ++R +      F    ++   SEP               YR 
Sbjct: 140 GCKTQTLAYAAQIRHKHLQVRDLLVNFGKFDPKRME--SSEPDAILKPIVPCDEIFRYRN 197

Query: 46  RAEFHIWHD-------GDDLYHIMFDQQTKE----------------RMRIDYFMPGSLL 82
           + EF                  +   Q+T E                 + +      S  
Sbjct: 198 KMEFSFGTKRWVQKELKGKDEEVGVKQETNETDGYALGLHAPGFFDKVLHVQKCFLQSEP 257

Query: 83  INALMIEMMATIRLEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLD 128
            + ++  +  T     +             L+  + +    +++ + + +V  +      
Sbjct: 258 ADKVLAVVQETWMDPAVGLTPYDVHKHVGFLKHLMIRTGRNVSTGTPEVMVNFVTPCYKP 317

Query: 129 DAWRECAIRLRDA------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
           D       ++         ++     +       +      +  + E L    R L ++ 
Sbjct: 318 DLLMPLVDKITKIPEVVSIINNVNSSVGNTSVGEQEYTLYGKPNITEML----RGLTFQI 373

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVE 238
             NSF Q N      +L  ++  + G++GD    +L+L+CG G   L LAR    V   E
Sbjct: 374 SANSFFQTNTKQAD-VLYKLIEDSAGLKGDGSEIVLDLFCGTGTIGLTLARRAKHVYGYE 432

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           +   ++  AR N   N ++N   V+    +  ++  +E              +   I  D
Sbjct: 433 VVPEAIADARKNAKLNGIDNATFVQGDLNKINESFGKEF------------PKPDIIISD 480

Query: 299 PPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALF 347
           P R G+    +  +     P I+Y+SCNP +  RDL  L            + ++ +   
Sbjct: 481 PNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLRGFYDLKSVIPV 540

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP+T H+EC  LL  +
Sbjct: 541 DMFPHTPHIECVCLLELR 558


>gi|154506231|ref|ZP_02042969.1| hypothetical protein RUMGNA_03773 [Ruminococcus gnavus ATCC 29149]
 gi|153793730|gb|EDN76150.1| hypothetical protein RUMGNA_03773 [Ruminococcus gnavus ATCC 29149]
          Length = 559

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 87/399 (21%), Positives = 153/399 (38%), Gaps = 51/399 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP--IHYRMRAEFHIW---- 52
            G +     YE Q+  K ++++ ++          +  ++ P    YR + EF       
Sbjct: 81  GGCMYQTMSYEAQMDMKAEQVKNILNEAVNGEYLFEGVKASPKEFAYRNKMEFSFGDEYK 140

Query: 53  --------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN---ALMIEMMATIRLEPLLR 101
                   H     Y ++     K  +  D     + ++       +     ++    LR
Sbjct: 141 DGPLTLGLHKKGSTYDVLTASDCK-LVHDDMTKILNCVLEYFKERNVSYYKKMQHTGYLR 199

Query: 102 AKLFQIDYLTSQSDQAIVTLIYH----RLLDDAWR--ECAIRLRDALHARKYQIQLIGRA 155
             L +    T +    +VT          L +A    E   ++   LH     +  + ++
Sbjct: 200 HLLLRRGDRTGEILVNLVTTTQEEHDMSPLKEALLNLELEGKIVGFLHILNDSLSDVVQS 259

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLL 214
           ++T+I   +DY  E+L      L ++    SF QPN+     +   V      I    + 
Sbjct: 260 DETRIIYGQDYFYEKLL----NLEFKITPFSFFQPNSRGAEVLYSTVRDYIGDINDMTVF 315

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+ G G  + VLA    +V+ VEI + +VEAA+ N A N ++N K +     +      
Sbjct: 316 DLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAAHNGLSNCKFIAGDVFKVL---- 371

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332
                      D    +   I +DPPR G+    +  +       I+YISC   SL RDL
Sbjct: 372 -----------DEIEEKPDVIVLDPPRDGIHPKALPKILDYGVDKIVYISCKVTSLARDL 420

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLV-RKPSGW 369
            ++    + + +    DQF  T H+E  VLL  +KP G 
Sbjct: 421 EMIQARGYEVVKSVAVDQFCQTVHVETVVLLSHKKPDGH 459


>gi|227432576|ref|ZP_03914556.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227351659|gb|EEJ41905.1| TrmA family tRNA (uracil-5-)-methyltransferase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 463

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 146/383 (38%), Gaps = 39/383 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L+  +YE QL  K  +++++     +    +  I    P +YR +    +    D L   
Sbjct: 96  LVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMDNPTYYRNKTIVPVKWQNDHLTSG 155

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTS--Q 113
            + + T + + +D +      I+  +I +   +        +P L+    +   +     
Sbjct: 156 FYKRGTHDLVPMDDYFVNDAEIDQAIIVVRNILEKYDITAFDPDLKRGAIRYIMIRRGYY 215

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDY 166
           S + +V L+ +  +     E    +R+ L   K  I                +I      
Sbjct: 216 SHELMVVLVSNEEVISHETEIIADIRNQLTELKSLILNYSPKKDYVLLSPNKRILWGEKA 275

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225
           + + L        +    NSF Q N      +       A       +++ Y G G   +
Sbjct: 276 IYDTLL----GYEFIIGPNSFYQVNPQTTEVLYALAAQKADLKPTDTVIDAYSGIGTIGI 331

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A    +VL VE+   +V  A+ N+  N+++N + +   +           +F + ++ 
Sbjct: 332 SVASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILADA---------PVQFKKWQE- 381

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIE 342
                +   +FVDPPR GL  + +          I+YISCNP +L RD   I+   + I+
Sbjct: 382 --QGLKPDVVFVDPPRRGLTTSLINATTDMSPEKIVYISCNPVTLSRDAVEIIENGYHID 439

Query: 343 -RLALFDQFPYTRHMECGVLLVR 364
             +   DQFP T H+E   +  +
Sbjct: 440 GSVLPVDQFPQTSHVESITVFRK 462


>gi|295697348|ref|YP_003590586.1| RNA methyltransferase, TrmA family [Bacillus tusciae DSM 2912]
 gi|295412950|gb|ADG07442.1| RNA methyltransferase, TrmA family [Bacillus tusciae DSM 2912]
          Length = 528

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 73/357 (20%), Positives = 127/357 (35%), Gaps = 42/357 (11%)

Query: 35  IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI 94
           +    P  YR      + + G  L    +    +  +  +        + AL+   +   
Sbjct: 182 LGMESPWRYRNNIHMAVKNRGGRLAAGYYSSGGRRWVATEDCPIADKRLVALIRAGLRAA 241

Query: 95  RLEPLLRAKLFQIDYLTSQS----------------------DQAIVTLIYHRLLDDAWR 132
            +     A+        ++S                       Q ++  +  R       
Sbjct: 242 EVCGWQAAEKATHGPAGARSHGESTGGVGRLYHLAARVAPGTGQTMLIAVVDREQMPHLG 301

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTVAGRTLIYRQIENSFTQ 189
           E + R+RDA+      I  + R  +  I   R    Y   R+      L +     SF Q
Sbjct: 302 EFSDRVRDAVPEVTSVILNVRRRGEGPIYGRRSIALYGPSRIVDRMGGLWFEISPTSFYQ 361

Query: 190 PNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            N+     M    + AA       +++ YCG G  SL L+R    V  +E+A+ +V  AR
Sbjct: 362 VNSQQAERMYRLAVEAAGLDGSQRVVDAYCGVGTLSLFLSRSAAWVTGIEVAREAVADAR 421

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   N + N +    + +E    +  +R             +   + +DPPR G     
Sbjct: 422 RNARMNRIGNARFQVGAVEEILPRLVADR-------------QPDVVTLDPPRRGCRREV 468

Query: 309 VGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           +  +     P ++Y+SC+P +L RDL IL    + +  +   D FP T H+E   LL
Sbjct: 469 LEALICSQVPRVVYVSCDPATLARDLRILAGGGYQVRGVWPVDMFPQTGHVESVALL 525


>gi|195614602|gb|ACG29131.1| hypothetical protein [Zea mays]
          Length = 558

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 147/430 (34%), Gaps = 93/430 (21%)

Query: 10  YEQQLAEKVDRLRQM---MLAFQVPNLQIFRSEP-------------IHYRMRAEFHIWH 53
           Y  Q+  K  ++R +      F    L+   SEP               YR + EF    
Sbjct: 148 YAAQIRHKHHQVRDLLVNFGKFDPKRLE--SSEPDDILKPTVQCDEIFRYRNKMEFSFGT 205

Query: 54  D-------GDDLYHIMFDQQTKE----------------RMRIDYFMPGSLLINALMIEM 90
                    D    +   Q+T E                 + +      S   + ++  +
Sbjct: 206 KRWVQKELKDKGEEVEVKQETNETDGYALGLHAPGFFDKVLHVQKCFLQSEPADKVLAVV 265

Query: 91  MATIRLEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAI 136
             T     +             L+  + +    +++ + + +V  +      D       
Sbjct: 266 QETWMDPAIGLTPYDVHKHVGFLKHLMIRTGRNISTGTPEVMVNFVTSCYKPDVLMPLVD 325

Query: 137 RLRDA------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           ++         ++     +       +      +  + E L    R L ++   NSF Q 
Sbjct: 326 KITKIPEVVSVINNVNSSVGNSSVGEQEYTLYGKPNITEML----RGLAFQISANSFFQT 381

Query: 191 NAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           N      +L  ++  + G++GD    +L+L+CG G   L LAR    +   E+   ++E 
Sbjct: 382 NTKQAD-VLYKLIEDSAGLKGDGSEIVLDLFCGTGTIGLTLARRAKHIYGYEVVPEAIED 440

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR N   N +NN   V+    +  ++  +E              +   I  DP R G+  
Sbjct: 441 ARKNAKLNGINNATFVQGDLNKINESFGKEF------------PKPDIIISDPNRPGMHM 488

Query: 307 ATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRH 355
             +  +     P I+Y+SCNP +  RDL  L            + ++ +   D FP+T H
Sbjct: 489 KLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLRGFYELKSVIPVDMFPHTPH 548

Query: 356 MECGVLLVRK 365
           +EC  LL  +
Sbjct: 549 IECVCLLELR 558


>gi|256419908|ref|YP_003120561.1| RNA methyltransferase, TrmA family [Chitinophaga pinensis DSM 2588]
 gi|256034816|gb|ACU58360.1| RNA methyltransferase, TrmA family [Chitinophaga pinensis DSM 2588]
          Length = 472

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 84/404 (20%), Positives = 157/404 (38%), Gaps = 56/404 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPNLQIFRSEP--IHYRMRAEFHIWHDG- 55
                +  Y+QQL  K  ++    Q +   ++P +Q         HYR + EF   +   
Sbjct: 82  GCKWQMLPYDQQLEYKQQQVADNLQRIGKLELPPMQPIMGSRHITHYRNKLEFTFSNKAY 141

Query: 56  ----------------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
                            +       +   + + I+     +  +NA+   + A      L
Sbjct: 142 LPADELELDEDGNIPRKNALGFHVPKLFDKVLDINTCYLQAEPVNAIRNTIRAYALEHNL 201

Query: 100 ----LRAK---LFQIDYLTSQSDQAIVTLIYH-------RLLDDAWRECAIRLRDALHAR 145
               +RAK   L  +      + + +V L+ H         L D        +   L+  
Sbjct: 202 SFYDIRAKEGWLRNLVIRICTTGEVMVNLVIHHENKKDREALLDHLLATVPGITSVLYTI 261

Query: 146 KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
             ++       + K    + YV+E+L        ++    SF Q N       L  V   
Sbjct: 262 NPKLNDTIFDLEPKTYFGKGYVEEKL----EDFTFKIGPKSFFQTNTYQGEA-LYQVTRD 316

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             G+ G   + +LYCG G+  + ++R   +V+ +E+ K +++ A  N A N+VNN +   
Sbjct: 317 FAGLTGTEIVYDLYCGTGSIGIFVSRQAGKVVGIELIKEAIDDAIENAARNNVNNAQFYA 376

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYI 321
               +                      +   +  DPPR+G+ +  V  +   A P I+Y+
Sbjct: 377 GDVVDICND-----------AFFAQHGQPDVVITDPPRAGMHEKLVNKLLEIAAPRIVYV 425

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCNP +  RDL++L   ++++++   D FP+T H+E  VLL ++
Sbjct: 426 SCNPATQARDLALLDVMYSVKKIQPVDMFPHTHHIENVVLLEKR 469


>gi|120555154|ref|YP_959505.1| 23S rRNA 5-methyluridine methyltransferase [Marinobacter aquaeolei
           VT8]
 gi|143581341|sp|A1U2U9|RUMA_MARAV RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120325003|gb|ABM19318.1| 23S rRNA m(5)U-1939 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 449

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 145/380 (38%), Gaps = 36/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG- 55
             +L     + Q+  K + LR+    F     +     +   + + YR +A   + +   
Sbjct: 86  GCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQWVAPMRSPDSLGYRRKARLGVRYVKA 145

Query: 56  -DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            + +     +++      ID  +     I   +  +   +        ++ Q++      
Sbjct: 146 RESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLRELLHGMAAF-DRIAQVEVACGDD 204

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL-----DRDYVDE 169
             A+V     R +DD   +   +L     A    I L  +   T   +      RD  DE
Sbjct: 205 TAAMV----FRNMDDLVPDDREKLIAFGQAHDLHIYLQPKGPDTVHRIWPESGGRD--DE 258

Query: 170 RLTV--AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           RLT       L        FTQ NAGIN +M+   +       G+ +L+L+CG GNF+L 
Sbjct: 259 RLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQPGERVLDLFCGLGNFTLP 318

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LAR   +V+ VE     V   R N   N ++NV+                          
Sbjct: 319 LARKGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGAD------------LHGDFTGQS 366

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERL 344
                F  I +DPPRSG ++    +       I+Y+SCNP +L RD  ++    + + + 
Sbjct: 367 WAKEGFDKILIDPPRSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYRLVQA 426

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   L  R
Sbjct: 427 GVMDMFPHTTHVESIALFER 446


>gi|315037858|ref|YP_004031426.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325956332|ref|YP_004291744.1| RNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|312275991|gb|ADQ58631.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1112]
 gi|325332897|gb|ADZ06805.1| RNA methyltransferase [Lactobacillus acidophilus 30SC]
 gi|327183151|gb|AEA31598.1| RNA methyltransferase [Lactobacillus amylovorus GRL 1118]
          Length = 459

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 143/386 (37%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y++QL  K + + + +  +             I   +P HYR +A++ I      
Sbjct: 90  LSHLSYDKQLEFKRNNMLESLKKYHPRGYAKYKVKKTIPAPDPWHYRNKAQYQIESVHGK 149

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               +F   +   + +      +            LI  L + +    R  P ++  + +
Sbjct: 150 TKLGLFAPNSHRLIDLPKMPTQNEDTQKTEREIKELIEKLHVPVANYRRHLPGIKTVVVR 209

Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163
               T +    ++T+ +  + L    +E      +                 NKT+  L 
Sbjct: 210 QSEATKEIQVTLITIDHKLKNLIPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 269

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           ++ + E +      L       +F Q N    V++    L          L++ Y G G 
Sbjct: 270 KNQIVEEILGKKFAL----SPRAFFQLNPVQTVNLYSEALKYLDLTPDQTLIDAYSGVGT 325

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ ++++             L
Sbjct: 326 LGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGATEKV------------L 373

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL  + +  +        +YISCNP +L +DL +LS  + 
Sbjct: 374 PELQNSGVSIDALIVDPPRTGLAKSLIKTILRVKPETFVYISCNPSTLAQDLVLLSEAYD 433

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 434 VRLIQNVDMLPQTPRCEAIAKLVLRK 459


>gi|319902370|ref|YP_004162098.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P
           36-108]
 gi|319417401|gb|ADV44512.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P
           36-108]
          Length = 475

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 145/400 (36%), Gaps = 57/400 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55
            Y +Q+  K  ++   ++             +   +   YR + E+   +          
Sbjct: 91  PYSEQIKYKQKQVTDNLIRIGKIELPEISPILGSEKTQFYRNKLEYTFSNKRWLTNAEIQ 150

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
            + +Y  M            + + I+       + N +   +             LR + 
Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V LI     D+     ++    + D        + +I    N 
Sbjct: 211 GMLRNMIVRTSTTGELMVILICKIEKDEEMELFKQLLQYVADTFPEITSLLYIINNKCND 270

Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T   L       +D++ E +      L ++    SF Q N+    + L  +     G+ G
Sbjct: 271 TITDLDVYTFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIARNFAGLTG 325

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D  + +LY G G  +  ++    RV+ +E    ++E A+ N   N + N        K+ 
Sbjct: 326 DELVYDLYTGTGTIANFVSGKARRVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKDM 385

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                        +D      R   I  DPPR+G+    V ++       I+Y+SCNP +
Sbjct: 386 LT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             RDL +L   + ++ +   D FP+T H+E  VLL  K +
Sbjct: 435 QARDLQLLDVKYKVKAVQPVDMFPHTHHVENVVLLELKAN 474


>gi|160901890|ref|YP_001567471.1| RNA methyltransferase [Petrotoga mobilis SJ95]
 gi|160359534|gb|ABX31148.1| RNA methyltransferase, TrmA family [Petrotoga mobilis SJ95]
          Length = 387

 Score =  239 bits (609), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 160/397 (40%), Gaps = 58/397 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52
             + L   YE+QL  K   +  +   +Q          P++ I+      YR + E+   
Sbjct: 12  GCSKLHINYEEQLKIKEKNVLSLFDQYQIKPNNYHGITPSVDIYE-----YRNKMEYSFG 66

Query: 53  HDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN---------------ALMIEMMATIRLE 97
           ++  D   ++  +   ++  + Y+     L++                  I         
Sbjct: 67  NEYKDGPLVLGLRGKGKKFDV-YYTKDCKLVDYDFNNIVIKTREFFLKKNIPFRNYKNHS 125

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA--WRECAIR------LRDALHARKYQI 149
             LR    +    T +    +VT + +    +   W+E  +       +   + ++    
Sbjct: 126 GFLRNLGIRKGLKTGEILLNLVTSLDNTYYQEVETWKEEMLNTNLKGNIVSIIQSKTESK 185

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
             + +A++ +I   RDY  E++      L ++    SF Q N      + +  L+  +  
Sbjct: 186 ANVVKADEMEILYGRDYFYEKIL----DLTFKIGPFSFFQTNTKGTEVLYQTALSYAEN- 240

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              + + Y G G  SL+LA    +V  +EI K +VEAA+ N   N++NNV+ V    K+F
Sbjct: 241 SDVVYDFYSGTGTISLLLANKAKKVYGIEIIKEAVEAAKQNAILNNINNVEFVNKDVKDF 300

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
            +                 + +   I VDPPR+GL    +  ++      I+YISCNP +
Sbjct: 301 VKQQS-------------STEKPDYIVVDPPRAGLHPNLIKFIKTQQFNKIIYISCNPKT 347

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L  +L  LS  +TI    L D FP+T H+E  VL+ R
Sbjct: 348 LIPNLKELSDLYTISDFHLVDMFPHTDHVESVVLMTR 384


>gi|218961437|ref|YP_001741212.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730094|emb|CAO81006.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Candidatus Cloacamonas
           acidaminovorans]
          Length = 456

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 94/386 (24%), Positives = 152/386 (39%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PI--HYRMRAEFHIW--HDGD 56
               L+ +Y +QL +K   L ++   F   ++  F +  P   HYR +    +   +   
Sbjct: 80  GCDWLMLKYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQIKHYRNKVFMPVGKNYQTG 139

Query: 57  DLYHIMFDQQTKERMRIDYF----MPGSLLINALM-------IEMMATIRLEPLLRAKLF 105
            + + MF + + + +  +           L N+LM       +E    I  +  LR   F
Sbjct: 140 KITYGMFARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAKVEPYNEIEHKGQLRHIGF 199

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           + +   S   Q +V L+              +L       K  IQ I R  K  + L ++
Sbjct: 200 RCN---SDGRQILVILVTLSGKLPFTNLLVKKLTTEFPQIKGIIQNINR-QKENVILGKE 255

Query: 166 ----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
               Y  E L      L +R    SF Q N G  + M+   L         +L+ YCG G
Sbjct: 256 TKLLYGSENLYDNLCGLKFRINYRSFWQINTG-TMEMIISFLQDFVNSNNVILDAYCGIG 314

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LA    RV+ +E    ++E A+ N   N + NV  V    ++   A+        
Sbjct: 315 AIGLSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKVEDNLSAV-------- 366

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--ST 337
                +   +  TI +DPPRSG+    +  +       I+Y+SC P +L RDL+ L    
Sbjct: 367 -----LIKEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGE 421

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
            + +  L  FD FP T H+EC  +L 
Sbjct: 422 KYKVVFLQPFDMFPNTWHIECLAVLK 447


>gi|116617569|ref|YP_817940.1| tRNA (uracil-5-)-methyltransferase related enzyme [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096416|gb|ABJ61567.1| 23S rRNA m(5)U-1939 methyltransferase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 463

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 146/383 (38%), Gaps = 39/383 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L+  +YE QL  K  +++++     +    +  I    P +YR +    +    D L   
Sbjct: 96  LVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMDNPTYYRNKTIVPVKWQNDHLTSG 155

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQ- 113
            + + T + + +D +      I+  +I +   +    +        R  +  I       
Sbjct: 156 FYKRGTHDLVPMDDYFVNDAEIDQAIIVVRNILEKYDITAFDPDLERGAIRYIMIRRGYY 215

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDY 166
           S + +V L+ +  +     E    +R+ L   K  I                +I      
Sbjct: 216 SHELMVVLVSNEEVISHETEIIADIRNQLTELKSLILNYSPKKDYVLLSPNNRILWGEKA 275

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225
           + + L        +    NSF Q N      + +     A       +++ Y G G   +
Sbjct: 276 IYDTLL----GYEFIIGPNSFYQVNPQTTEVLYDLAAQKADLKPTDTVIDAYSGIGTIGI 331

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A    +VL VE+   +V  A+ N+  N+++N + +   +           +F + ++ 
Sbjct: 332 SVASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILADA---------PVQFKKWQE- 381

Query: 286 DIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHILYISCNPDSLCRDL-SILSTTHTIE 342
                +   +FVDPPR GL  + +      +   I+YISCNP +L RD   I+   + I+
Sbjct: 382 --QGLKPDVVFVDPPRRGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVEIIENGYHID 439

Query: 343 -RLALFDQFPYTRHMECGVLLVR 364
             +   DQFP T H+E   +  +
Sbjct: 440 GSVLPVDQFPQTSHVESITVFRK 462


>gi|313147266|ref|ZP_07809459.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136033|gb|EFR53393.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 463

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 145/397 (36%), Gaps = 55/397 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +  ++   YR + EF              
Sbjct: 82  PYAEQIKYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVK 141

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR++ 
Sbjct: 142 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTIRDYAYEHNYSFINLRSQE 201

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V LI     +   D +++    + D        + +I    N 
Sbjct: 202 GMLRNMIVRTSSTGELMVILICKITEEHEMDLFKQLLQYVADQFPEITSLLYIINNKCND 261

Query: 158 T------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T       +    D++ E +      L ++    SF Q N+G   ++ +          G
Sbjct: 262 TINDLDVHVFRGNDHIFEEM----EGLRFKVGPKSFYQTNSGQAYNLYKVARDFAGLTGG 317

Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L+ +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+  
Sbjct: 318 ELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKDIL 377

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
                       +D      R   I  DPPR+G+    V ++       I+Y+SCNP + 
Sbjct: 378 T-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQ 426

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL +L   + ++ +   D FP+T H+E  VLL  K
Sbjct: 427 ARDLQLLDVKYRVKAVQPVDMFPHTHHVENVVLLELK 463


>gi|170016721|ref|YP_001727640.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20]
 gi|169803578|gb|ACA82196.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc citreum KM20]
          Length = 462

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 147/386 (38%), Gaps = 45/386 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L+  +YE QL  K  +++++  A     V +  I  + P +YR +    +      L   
Sbjct: 94  LVNLKYEAQLELKRQQVKRLFEAQNIEVVVDSTIGMANPTYYRNKTIVPVKWQNGHLTSG 153

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYL 110
            + + T E + +  +      I+  +I +   +    +           +R  + +  Y 
Sbjct: 154 FYRRGTHELVPMTDYFVNDANIDQAIITVREVLENYQISAYDPDTQVGAIRYIMIRRGYY 213

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLD 163
              S + +V L+ +    +        LR  L   K  I                +    
Sbjct: 214 ---SHELMVVLVANDAQINHESAITQELRQNLPELKSLIFNYSPKKDYVLLSPNNRTLWG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
              + + L        +    NSF Q N      + +           D +++ Y G G 
Sbjct: 271 ETAIKDTLL----GYTFLIGPNSFYQVNPQTTEVLYDLAARKADLKTTDIVIDAYSGIGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             + +A+   +VL VE+   +V  A+ N+  NHV+N + +   +    Q  +  +E N  
Sbjct: 327 IGITVAKQVRKVLGVEVVPGAVADAQLNMRMNHVDNAEYILADA---PQQFKLWQEAN-- 381

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
                   +   +FVDPPR GL +A +      A   I+Y+SCNP +L RD S L    +
Sbjct: 382 -------LQPDVVFVDPPRRGLTNALIKATTDMAPDRIVYVSCNPVTLVRDASELVQQGY 434

Query: 340 TIER-LALFDQFPYTRHMECGVLLVR 364
            I+  +   DQFP T H+E   +  +
Sbjct: 435 HIDGPVLPVDQFPQTSHVESITVFKK 460


>gi|53713830|ref|YP_099822.1| RNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60682048|ref|YP_212192.1| putative RNA methyltransferase [Bacteroides fragilis NCTC 9343]
 gi|253565800|ref|ZP_04843255.1| RNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|265764175|ref|ZP_06092743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_16]
 gi|52216695|dbj|BAD49288.1| RNA methyltransferase [Bacteroides fragilis YCH46]
 gi|60493482|emb|CAH08268.1| putative RNA methyltransferase [Bacteroides fragilis NCTC 9343]
 gi|251946079|gb|EES86486.1| RNA methyltransferase [Bacteroides sp. 3_2_5]
 gi|263256783|gb|EEZ28129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           2_1_16]
          Length = 472

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 145/398 (36%), Gaps = 57/398 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +  ++   YR + EF              
Sbjct: 91  PYAEQIKYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVK 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR++ 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTIRDYAYEHNYSFINLRSQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V LI     +   D +++    + D        + +I    N 
Sbjct: 211 GMLRNMIVRTSSTGELMVILICKITEEHEMDLFKQLLQYVADQFPEITSLLYIINNKCND 270

Query: 158 T------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T       +    D++ E +      L ++    SF Q N+    + L  V     G+ G
Sbjct: 271 TINDLDVHVFRGNDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARDFAGLTG 325

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+ 
Sbjct: 326 DELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKDI 385

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                        +D      R   I  DPPR+G+    V ++       I+Y+SCNP +
Sbjct: 386 LT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL +L   + ++ +   D FP+T H+E  VLL  K
Sbjct: 435 QARDLQLLDVKYRVKAVQPVDMFPHTHHVENVVLLELK 472


>gi|325496175|gb|EGC94034.1| 23S rRNA 5-methyluridine methyltransferase [Escherichia fergusonii
           ECD227]
          Length = 432

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 86/368 (23%), Positives = 143/368 (38%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
                    E Q   K   L ++M    V +  I    P  YR RA   + +        
Sbjct: 89  GCQQQHASVELQQQSKSAALARLM-KHDVAD--IIADAPWGYRRRARLSLNYLAKTQQLQ 145

Query: 62  MFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           M  ++  + + + +         I AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAASSDIVDVKQCPILVPQIEALLPKVRACLMSLQTVRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H  +  + L   +   +  +      E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HCERLSLFLAPDSEILEPLVG-----ETPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                + F Q N G+N  M+   +       Q  +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LMFSPHDFIQVNDGVNQKMVAQAIEWLDIQPQDRVLDLFCGMGNFTLALATRAASVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  R N   N + NV     + ++             +         F  + +D
Sbjct: 316 GVPALVEKGRENARENGLANVTFYHENLED------------DVTKQPWAKNGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  ++Y+SCNP +L RD   L +  +TI RLA+ D FP+T H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRVVYVSCNPATLARDSEALINAGYTIARLAMLDMFPHTGHL 423

Query: 357 ECGVLLVR 364
           E  VL  R
Sbjct: 424 ESMVLFER 431


>gi|269120598|ref|YP_003308775.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
           33386]
 gi|268614476|gb|ACZ08844.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
           33386]
          Length = 451

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 72/392 (18%), Positives = 160/392 (40%), Gaps = 50/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI------FRSEPIHYRMRAEFHIWHDG 55
                + +Y++QL  K   L + +      N +I            +YR +         
Sbjct: 80  GCDYAMIKYDKQLEYKSSILLETIKKIGKINDEINFEGIIGADNITNYRNKVSEPFAKKD 139

Query: 56  DDLYHIMFDQQTKERMRIDYFM----PGSLLINALMIEM-------MATIRLEPLLRAKL 104
             +    + +++ +   ++  M        ++N L+ ++          +     LR  L
Sbjct: 140 GKIITGFYQKKSHDVFEVENNMLRSKIADKVVNELLEKLNEGDFTVYNEVNKSGFLRYLL 199

Query: 105 FQIDYLTSQSDQAIVTLIYH--------RLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
            + +      ++ ++T++ +        R +     E    +     + K         N
Sbjct: 200 VRNN----SRNEVMITVVINKTTQLKKLRTVLLGLTEKYKEIVSVYISLKSDEGNYVLGN 255

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215
           + K+    +Y++E L      + ++   +SF Q N+   + +    +      +   +++
Sbjct: 256 EHKLIYGSEYLEEEL----DGIKFKIYPDSFFQINSEQTIKLYNKAMEYLGDSEDKRIVD 311

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            + G G   +++++   +V  +E  + SV +A++  A N++ NV+      +        
Sbjct: 312 AFSGTGTLGMLVSKTARKVYCIESMESSVISAKHTAAENNIKNVRFKIGKVE-------- 363

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS 333
               N+L +I + + +   I  DPPR G+D+ T+  +  +    I+YISCNP +L RD+ 
Sbjct: 364 ----NKLPEI-LKNTKMDGIIFDPPRKGIDENTLKSIGKHGIERIVYISCNPSTLARDVK 418

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           IL+   + +E+LA  D FP T H+E   L ++
Sbjct: 419 ILTDLGYRLEKLAAVDMFPQTHHIEAVSLFLK 450


>gi|107100389|ref|ZP_01364307.1| hypothetical protein PaerPA_01001414 [Pseudomonas aeruginosa PACS2]
          Length = 452

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 138/374 (36%), Gaps = 36/374 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             TL   ++ +QLA K   L++ +  F     +            YR RA   +  D   
Sbjct: 101 GCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARA 160

Query: 58  LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                      ++E +  D  +   P    I   +  ++   R    +          + 
Sbjct: 161 RRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTAS- 219

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
               A++      L+D    E   RL     A + Q+ L G      +    + +   L 
Sbjct: 220 ----ALLLRHTTALVD----EDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAE-LGYSLG 270

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
               TL YR     F Q NA +N  M+   L        + +L+L+CG GNFSL LAR  
Sbjct: 271 DWQLTLAYR--PGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRV 328

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV+ VE     VE A  N  AN + N    +    +             L +       
Sbjct: 329 ARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKA------------LAEAPWAEQG 376

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
           F  + +DPPR G  +A   M       ++Y+SCNP +L RD   ++   + ++R  + D 
Sbjct: 377 FTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 436

Query: 350 FPYTRHMECGVLLV 363
           FP T H+E   L  
Sbjct: 437 FPQTAHVEAMALFE 450


>gi|210623379|ref|ZP_03293776.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275]
 gi|210153640|gb|EEA84646.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275]
          Length = 458

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 142/391 (36%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAE--FHIWHDG 55
             T+L   Y +QL  K +++ ++     +   +        + + YR + E  F     G
Sbjct: 79  GCTMLSVDYAKQLEIKEEQVLELFEDAGIRGFEFLGVQGSPDNVGYRNKMEYTFGDEVKG 138

Query: 56  DDLYHIMFDQQTKERMR-IDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAK 103
             L   +  +     ++ +D  M      N ++ E +A            +  E  LR  
Sbjct: 139 GPLTLGLHKKGRHIDIQTVDGCMLVDSDFNTILKESLAFFQDAELPYYRVVNHEGYLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWR------ECAIRLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT          +       E    +   LH     +    + ++
Sbjct: 199 VVRKGIHTDEIMVNIVTSSQCEFDMSKFADMINGLELKGNVVSILHTINDGLADAVQCDE 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            +I    DY+ E +      L ++    SF Q N      +              ++ +L
Sbjct: 259 MRILYGVDYLHEEIL----GLKFKISPFSFFQTNTKGAEQLYTIARDFIGDHSNKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G+   ++A    +V  +EI + +V AA  N   N ++N + +    K+  +++   
Sbjct: 315 YSGTGSIGQLMAEKAKKVYGIEIIEEAVVAANENAKLNGLDNCEFIAGDVKDTVKSL--- 371

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS- 333
                         +   I VDPPR G+    +  +       I+YISCNP +L  DL  
Sbjct: 372 ------------DVKPDLIIVDPPRPGIHKQAIKDICDFGAKEIVYISCNPKTLVDDLKD 419

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +   +  E++   D FP T H E  V L +
Sbjct: 420 FIGYGYMPEKVKCMDMFPNTPHCESVVKLYK 450


>gi|300770388|ref|ZP_07080267.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762864|gb|EFK59681.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 469

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 147/400 (36%), Gaps = 52/400 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWH--- 53
                   Y  QL  K   +  ++              +   E  +YR + E+   +   
Sbjct: 85  GCKWQHMDYNGQLKFKQQTVDNVLARIGKVDTSIMEPILGSGETEYYRNKLEYTFSNKRW 144

Query: 54  ----DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
               D  +    M            + + ID+        NA+  ++ A      +    
Sbjct: 145 LTSVDDANEGLEMNALGFHVPGRFDKILDIDHCYLQQDPSNAIRNQIRAFAIEHQISFYD 204

Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
           LR     L  +   T+ + + +V +++    +         + ++       + +I +  
Sbjct: 205 LREHAGALRNLIIRTASTGELMVIVVFAYPQEGQVELLMNYINNSFPDIDSLLYIINQKK 264

Query: 157 -------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                     I   RD++ E +      L Y+    SF Q N+      L  +     G+
Sbjct: 265 NDTIFDQDIHIFKGRDFIYEEM----EGLKYKIGPKSFYQTNSLQAYE-LYKITREFAGL 319

Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            GD  + +LY G G  +  +A+    V+ VE    ++E A+ N A N + N K      K
Sbjct: 320 TGDELVYDLYTGAGTIANFVAKTAREVIGVEYVPTAIEDAKINSAINQIGNTKFYAGDMK 379

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325
           +   A           D      +   +  DPPR+G+    V  +       I+Y+SCN 
Sbjct: 380 DVLTA-----------DFIAEHGKPDVVITDPPRAGMHGDVVQRLLEMEAEKIVYVSCNA 428

Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +  RDL++L+  +T++R+   D FP+T+H+E  VLL  K
Sbjct: 429 ATQARDLALLNEKYTVDRIKPVDMFPHTQHVENVVLLKLK 468


>gi|255009493|ref|ZP_05281619.1| putative RNA methyltransferase [Bacteroides fragilis 3_1_12]
          Length = 472

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 145/397 (36%), Gaps = 55/397 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +  ++   YR + EF              
Sbjct: 91  PYAEQIKYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVK 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR++ 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTIRDYAYEHNYSFINLRSQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V LI     +   D +++    + D        + +I    N 
Sbjct: 211 GMLRNMIVRTSSTGELMVILICKITEEHEMDLFKQLLQYVADQFPEITSLLYIINNKCND 270

Query: 158 T------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T       +    D++ E +      L ++    SF Q N+G   ++ +          G
Sbjct: 271 TINDLDVHVFRGNDHIFEEM----EGLRFKVGPKSFYQTNSGQAYNLYKVARDFAGLTGG 326

Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L+ +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+  
Sbjct: 327 ELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKDIL 386

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
                       +D      R   I  DPPR+G+    V ++       I+Y+SCNP + 
Sbjct: 387 T-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQ 435

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL +L   + ++ +   D FP+T H+E  VLL  K
Sbjct: 436 ARDLQLLDVKYRVKAVQPVDMFPHTHHVENVVLLELK 472


>gi|303273590|ref|XP_003056155.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462239|gb|EEH59531.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 549

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 161/424 (37%), Gaps = 61/424 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEP----IHYRMRAEFHIWHD 54
             T L   Y+QQLA K D++  +M         +  +    P    + YR + EF     
Sbjct: 121 GCTWLDVAYDQQLAFKRDQVVDVMTRIARINDADRIVNAISPSQQRLRYRNKMEFAFAQV 180

Query: 55  GDDLY----HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE------------- 97
           GD+        +        + ++ F  G +L   +  +++A                  
Sbjct: 181 GDNSSGRPAFGLRPAGDHTGL-VEVFTSGCVLQQVVADKVLARCAAHLHAMADVSALLPV 239

Query: 98  -------PLLRAKLFQIDYLTSQ-SDQAIVTLIYHRLLDDAWRECAIRLRDALHA----- 144
                   +LR+   +   L  + S +  V +I    LD   +E                
Sbjct: 240 FNRRTGCGVLRSLTLRTAPLAGRCSGETAVMVIIAAALDRQGKETKKAFAALAADLATID 299

Query: 145 --RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
             +    + +G  N+ +I +   +    +++  R +++     SF Q N      ++E V
Sbjct: 300 CVQSVVHERVGDNNENQITV--LHGPATISITLRGVVFALSVKSFFQTNTKQAEILVESV 357

Query: 203 LAATK---GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             A          +L+L+CG G F L LA     V   EI   +VE A+ N  AN + N 
Sbjct: 358 EEACALTGENTETILDLFCGVGTFGLCLASKARHVYGCEIVPEAVEDAKRNAVANRIENA 417

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AY 315
              +    + +++M      +  K I       R   + VDP RSG+D   V +++    
Sbjct: 418 TFWQADLAQLSESMLCADSKSMSKSIVFGKDVVRPDVVIVDPARSGMDVTLVAILRSLGI 477

Query: 316 PHILYISCNPDSLCRDLSILS------------TTHTIERLALFDQFPYTRHMECGVLLV 363
           P I+Y+SCNP +  RD+++L               + +      D FP+T H+E  V+L 
Sbjct: 478 PRIVYVSCNPATQARDVALLCDVSDNTQSGDLLAKYRLISCIPVDLFPHTPHVENIVVLE 537

Query: 364 RKPS 367
           R PS
Sbjct: 538 RVPS 541


>gi|153809759|ref|ZP_01962427.1| hypothetical protein RUMOBE_00140 [Ruminococcus obeum ATCC 29174]
 gi|149833937|gb|EDM89017.1| hypothetical protein RUMOBE_00140 [Ruminococcus obeum ATCC 29174]
          Length = 462

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 152/403 (37%), Gaps = 58/403 (14%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI--------------FRSEPIHYRMR 46
            G +     YE QL  K  ++R+++    V   QI                     YR +
Sbjct: 79  GGCMYQTMSYEDQLHMKEIQIRELLEEALVQGGQIDENGNAAFEWEGIHGSPIEFGYRNK 138

Query: 47  AEFHIW---HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA----------- 92
            EF       DG     +     T + +  D        +  ++  +             
Sbjct: 139 MEFSFGDEVKDGPLSLGLHKKGSTYDILNTDDCKLVHKDMTDILTCVREFFREKGASYYR 198

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARK 146
            ++    LR  + +    + +    +VT        +  ++  +      R+   +H   
Sbjct: 199 KLQHTGYLRHLMLRRGVTSGEILVHLVTTTQEEYDLEPLKDQLLALPLEGRIVGIMHILN 258

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
             +  + ++++T+I   +DY  E L      L +R    SF QPN+     +   V    
Sbjct: 259 DSLSDVVQSDETRILYGQDYFYETLL----GLKFRISTFSFFQPNSLAAEVLYNIVRDYI 314

Query: 207 KGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +   G ++ +LY G G  + +LA     V+ VEI + +V AAR N   N ++N K +   
Sbjct: 315 QNTSGMEVFDLYSGTGTIAQLLAPVAKEVIGVEIVEDAVAAARENAKLNGLDNCKFIAGD 374

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISC 323
                           LK +D  + +   I +DPPR G+    +  + +Y    I+Y+SC
Sbjct: 375 V---------------LKVLDDLTEKPDVIVLDPPRDGIHPKALPKILSYGVKRIVYVSC 419

Query: 324 NPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              SL RDL + L   + +E+    DQF  T   E   LLV++
Sbjct: 420 KATSLARDLEAFLQAGYRLEKACCVDQFCETVWTEAVALLVKE 462


>gi|189347986|ref|YP_001944515.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245]
 gi|189342133|gb|ACD91536.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245]
          Length = 482

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 149/407 (36%), Gaps = 61/407 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFRSEPI----HYRMRAEFHIWHDGD 56
              L+   YE QL  K  ++   ++      +  +    P     HYR + E        
Sbjct: 89  GCKLMHISYEAQLRYKRKKVIDDLVHIGGFTDPPVHPVLPARHSCHYRNKVELSC----S 144

Query: 57  DLYHIMFDQQTKE--------------------RMRIDYFMPGSLLIN---ALMIEMMAT 93
            + ++M ++ ++E                     + IDY    +  +N    L  E    
Sbjct: 145 SIRYLMPEELSQEELSRSRDFGLGFHAPGNYEKVIDIDYCYLANEPMNSAVRLTREFALA 204

Query: 94  IRLEPL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
            RL P         LR  + +    T +    IVT  + R L   + +    L  AL  +
Sbjct: 205 NRLAPYAVKAHAGFLRNLVLRTSEYTGRLMVNIVTSWHDRELMARYADM---LVAALPDQ 261

Query: 146 KYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
              +       K  +         Y +  LT     L +R   NSF Q N+     +   
Sbjct: 262 DLTVVNNVTTKKNTVATGEQEFVVYGEGALTERLGELDFRVSANSFFQTNSSQAAVLYAE 321

Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +L  A       + +LYCG G  +L LARH      +E+ + S+  A  N   N + N  
Sbjct: 322 ILKVAGIRPDDTVYDLYCGTGTITLYLARHCRMAAGLEVVESSLSDAAKNADLNGITNAV 381

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-I 318
             +   K+F           +L++ D        I  DPPR+G+    +  M++     I
Sbjct: 382 FFQTDLKDF------HAMLQKLENYDAPG----VIVTDPPRAGMHPKALETMLKLRARTI 431

Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +Y+SCNP +L RD   +S   + +  +   D FP+T H+E      R
Sbjct: 432 VYVSCNPSNLARDGKEISRYGYRLVSVQPVDMFPHTVHVESVACFER 478


>gi|189463386|ref|ZP_03012171.1| hypothetical protein BACCOP_04105 [Bacteroides coprocola DSM 17136]
 gi|189429815|gb|EDU98799.1| hypothetical protein BACCOP_04105 [Bacteroides coprocola DSM 17136]
          Length = 489

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 145/398 (36%), Gaps = 57/398 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFH------------- 50
            Y+ Q+  K  ++   +       L  F       + + YR + EF              
Sbjct: 108 SYQDQIRYKQKQVYDNLTRIGKVELPEFMPILGSEKTMFYRNKLEFTFSNKRWLTEEEVK 167

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR++ 
Sbjct: 168 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAIRDFAYEHNYEFFDLRSQE 227

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V L      D    +  + L    D        + +I    N 
Sbjct: 228 GMLRNMMVRTSSTGELMVLLQCKITSDAELDKMKVLLLFVADKFPQITSLLYVINNKCND 287

Query: 158 T------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T      ++    D++ E +      L ++    SF Q N+    + L  V     G+ G
Sbjct: 288 TIGDLDVEVFKGNDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVARNFAGLTG 342

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+ 
Sbjct: 343 NELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNSQINGIENTLFYAGDMKDI 402

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                        +D      R   I  DPPR+G+ +  + ++       I+Y+SCNP +
Sbjct: 403 LT-----------QDFINEHGRPDVIITDPPRAGMHNDVIDVILFAEPKRIVYVSCNPAT 451

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL +L   + +  +   D FP+T H+E  VLL ++
Sbjct: 452 QARDLQLLDAKYKVMAVQPVDMFPHTHHVENVVLLEKR 489


>gi|15596130|ref|NP_249624.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           PAO1]
 gi|116048856|ref|YP_792343.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254239284|ref|ZP_04932607.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719]
 gi|296390713|ref|ZP_06880188.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           PAb1]
 gi|20140268|sp|Q9I525|RUMA_PSEAE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122257963|sp|Q02I93|RUMA_PSEAB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|9946837|gb|AAG04322.1|AE004527_9 probable RNA methyltransferase [Pseudomonas aeruginosa PAO1]
 gi|115584077|gb|ABJ10092.1| probable RNA methyltransferase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171215|gb|EAZ56726.1| hypothetical protein PACG_05477 [Pseudomonas aeruginosa C3719]
          Length = 450

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 138/374 (36%), Gaps = 36/374 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             TL   ++ +QLA K   L++ +  F     +            YR RA   +  D   
Sbjct: 99  GCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARA 158

Query: 58  LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                      ++E +  D  +   P    I   +  ++   R    +          + 
Sbjct: 159 RRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTAS- 217

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
               A++      L+D    E   RL     A + Q+ L G      +    + +   L 
Sbjct: 218 ----ALLLRHTTALVD----EDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAE-LGYSLG 268

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
               TL YR     F Q NA +N  M+   L        + +L+L+CG GNFSL LAR  
Sbjct: 269 DWQLTLAYR--PGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRV 326

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV+ VE     VE A  N  AN + N    +    +             L +       
Sbjct: 327 ARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKA------------LAEAPWAEQG 374

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
           F  + +DPPR G  +A   M       ++Y+SCNP +L RD   ++   + ++R  + D 
Sbjct: 375 FTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434

Query: 350 FPYTRHMECGVLLV 363
           FP T H+E   L  
Sbjct: 435 FPQTAHVEAMALFE 448


>gi|118580724|ref|YP_901974.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118503434|gb|ABK99916.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter propionicus DSM
           2379]
          Length = 493

 Score =  238 bits (608), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 149/387 (38%), Gaps = 38/387 (9%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEP--IHYRMRAEFHIWHDG 55
           +   L+   Y  Q   K   + + + A+       L    S     +YR      I    
Sbjct: 113 LGCPLIAMNYCDQAEWKRQFVLRQLDAYRGLDGIELHPLLSPRRLTNYRTTVRLTIAGKY 172

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAKL 104
            + Y  +F + + + + +        L           I+ L + + +      LLR  +
Sbjct: 173 AEPYIGIFRRSSHDVVDLCDCPIHHHLVNRVVEVVRRGISRLKVPVYSPRNRVGLLRYLV 232

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            ++   +    +A+V  +  R   +     A  +R+ L   +   Q +  +    I    
Sbjct: 233 VRV---SEAEQKAMVVFVTARRSYNEIHHLARYVREQLPEVEVVAQNVNSSEGNVIMGPV 289

Query: 165 DYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
           D+       LT     +       SF Q N      + E V    +    + +L+LYCG 
Sbjct: 290 DHFLTPKHHLTERIGEVSLMISPRSFLQVNRDGACLIYERVAEWARLTGRETVLDLYCGI 349

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +L LAR   RV+ VE+ + +VE AR N   N ++N         E            
Sbjct: 350 GGIALTLARRARRVIGVEVVEAAVEDARRNARMNGISNCVFQAGDVAE------------ 397

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPH-ILYISCNPDSLCRDLSILST- 337
           +L+++         + ++PPR G D+  +  V A  P  +LY+SC+P +L RDL++L + 
Sbjct: 398 QLEELAEDGEGVDVVVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLARDLNLLKSL 457

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +    +   D FP+T H+E    L +
Sbjct: 458 GYVCVEVQPVDMFPHTMHVENVARLEK 484


>gi|296111231|ref|YP_003621613.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
 gi|295832763|gb|ADG40644.1| RNA methyltransferase [Leuconostoc kimchii IMSNU 11154]
          Length = 458

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 140/383 (36%), Gaps = 39/383 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L+  +Y+ QL  K  +++++          +  I    P +YR +    +      L   
Sbjct: 90  LVNLKYQAQLELKQMQIQRLFDQRGIVSSVDSTIGMKAPSYYRNKTIVPVKWQDGHLTSG 149

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + E + +  +      I+  +I +   +             +  +R  + +  + 
Sbjct: 150 FYRRGSHELVPMTDYFVNDADIDKAIITVRDILEKYNISAFDPDIEQGAMRYIMIRRGFY 209

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL----IGRANKTKICLDRDY 166
           + +    +V+       ++       +    L +  +        +  +   +       
Sbjct: 210 SHELMVVLVSNHETIKFEENIITDICQQLPDLTSLIFNYSPKKEYVLLSPNNRTLWGSAA 269

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
           + + L        +    NSF Q N  +   + +           D+ ++ Y G G   +
Sbjct: 270 IHDTLL----GYDFVIGPNSFYQVNPQMTEKLYDLAAQKANLKTTDVVIDAYSGIGTIGI 325

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A    +VL VE+   +V  A+ NI AN + N   +   + E         +F R +D 
Sbjct: 326 TVANQVKQVLGVEVVPGAVADAQLNIKANKIKNATYILADAPE---------QFKRWQD- 375

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD-LSILSTTHTIE 342
                +   +FVDPPR GL    +          ++YISCNP +L RD + IL   + + 
Sbjct: 376 --AGLKPDVVFVDPPRRGLTSQLIQATVDMGPDRLVYISCNPVTLARDTVEILEKGYHLS 433

Query: 343 -RLALFDQFPYTRHMECGVLLVR 364
             +   DQFP T H+E   +  +
Sbjct: 434 GTILPVDQFPQTSHIESITVFKK 456


>gi|303235612|ref|ZP_07322219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens
           FB035-09AN]
 gi|302484059|gb|EFL47047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens
           FB035-09AN]
          Length = 474

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 148/400 (37%), Gaps = 63/400 (15%)

Query: 9   QYEQQLAEKVDRLRQMML---AFQVPNLQIFRSE--PIHYRMRAEFHI----WHDGDDLY 59
            YE+QL  K  ++   +       +P +           YR + EF      W+  ++L 
Sbjct: 91  PYEEQLKAKQQQVIDQLTRIGKIDLPEISPIMGSAKTEEYRNKLEFGCSNKRWYTKEELA 150

Query: 60  HIMFDQQTKE-------------RMRIDYFMPGSLLINALMIEMMATIRLEPLL------ 100
            +  D    +                I+         N +   +        +       
Sbjct: 151 ELPEDAGLNQGAIGFHITGAFDKIYPIEKCFLMDNFCNKVRNAIRDFALATGMTFFDIRE 210

Query: 101 -RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA-IRLRDALHARKYQIQLIGRANKT 158
               L  I    S + + +V + +H   D+   E   + L + +  +  +I  +   +  
Sbjct: 211 QHGLLRDIMMRNSNTGEWMVLIQFHY--DEEGDEMRAMALMNHVAEQFPEITALLYVDNQ 268

Query: 159 K-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           K           +    D++ E +      L ++    SF Q N     H+   V  A  
Sbjct: 269 KGNDTFNDLDLTVYKGNDHIFELM----EDLKFKVGPKSFYQTNTDQAYHLYS-VARAFA 323

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   + +LY G G  +  +A+   +V+ +E    ++E A+ N   N + N       
Sbjct: 324 GLTGKELVYDLYTGTGTIANFVAKQAKQVVGIEYVPEAIEDAKINSEINEIGNTLFYAGD 383

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISC 323
            K+               D      R   I  DPPR+G+ +  +  +++A+P  I+Y+SC
Sbjct: 384 MKDILTD-----------DFVKQHGRPDVIITDPPRAGMHNDVIDVILKAHPKRIVYVSC 432

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           NP +  RDL++LS  + +  +   D FP+T H+E  VLL 
Sbjct: 433 NPATQARDLALLSPDYRVVAVQPVDMFPHTPHVENVVLLE 472


>gi|253700779|ref|YP_003021968.1| RNA methyltransferase, TrmA family [Geobacter sp. M21]
 gi|251775629|gb|ACT18210.1| RNA methyltransferase, TrmA family [Geobacter sp. M21]
          Length = 438

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 142/373 (38%), Gaps = 25/373 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF---RSEPIHY--RMRAEFHIWHDGD 56
                   Y +QL +K +     +        ++       P HY  R R +  +     
Sbjct: 76  GCDWQHLPYAEQLKQKGEIFADTLARIGKVPRELVLPVSPSPEHYGYRSRIQLKVASKAG 135

Query: 57  DLYHIMFDQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                 F + + + + +       + L+N ++ E+   +   P L   + Q+D       
Sbjct: 136 APSLGFFKRGSHDVVDLAVGCALAAPLLNRVLAEVRGLLPRLPQLEG-IPQVDLSMGDDG 194

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER----L 171
           ++I    +      +  +  +  R  L +       IG   +       D +       L
Sbjct: 195 ESIAVFHFRGKDAASLLDRLLAARPELPSVAGAYVKIGEKGEMSAVFGVDSLSYGVPAGL 254

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH 230
               R +  R     F+Q N   N+ +++ V       +G  +L+LYCGNGN S+ LA  
Sbjct: 255 FPGSREVRLRFSRGGFSQVNYRQNLELIKTVGEWGAPREGVRVLDLYCGNGNISVPLAPL 314

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V+ VE   PS+  A  N  AN V N       +    + + + +E            
Sbjct: 315 VGEVVGVEGYAPSIVDAAANAEANGVANASYQVGDAALSVRRLAKRKE------------ 362

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
           +F  + +DPPR+G + A    + A   ILY+SC+P +L RDL+ L    + + R    D 
Sbjct: 363 KFDMVVLDPPRAGAEAAGELALLAPERILYVSCDPATLARDLAQLCGAGYRVARSKPVDM 422

Query: 350 FPYTRHMECGVLL 362
           FP T H+E    L
Sbjct: 423 FPQTYHLESVTEL 435


>gi|146300255|ref|YP_001194846.1| RNA methyltransferase [Flavobacterium johnsoniae UW101]
 gi|146154673|gb|ABQ05527.1| RNA methyltransferase, TrmA family [Flavobacterium johnsoniae
           UW101]
          Length = 470

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 143/402 (35%), Gaps = 54/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHD-- 54
                  +Y QQL  K + ++  +       L  F       +   YR + EF   +   
Sbjct: 85  GCKWQNMKYSQQLYYKQNEVKNHLQRIGKVELPEFETILGSEKQFFYRNKMEFSFSNSRW 144

Query: 55  ------------GDDLYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRL----- 96
                       G+         +  +++  I+         NA+  E+ A         
Sbjct: 145 LTEKEIGSTEDLGNRNALGFHIPKMWDKILDIEKCHLQEDPSNAIRNEIRAFANEHNLAF 204

Query: 97  -EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
             P   + L +   + + S   I+ LI     D A RE  +        +   +Q +  A
Sbjct: 205 FNPREHSGLLRTLMIRTASTGEIMVLIQFFEDDKANRELVLDHLYEKFPQITSLQYVVNA 264

Query: 156 NKTKICLDRD--------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
            +     D+D        Y+ E +      L +     SF Q N+      L  +     
Sbjct: 265 KQNDTIYDQDIKLYKGRNYILEEM----EGLKFSINAKSFYQTNSDQAYE-LYKITRDYA 319

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + +LY G G  +  +++   +V+ VE    ++  A+ N   N++ N +     
Sbjct: 320 GLTGEETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAILDAKANAERNNITNCEFFVGD 379

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
            K               +       +   I  DPPR G+  A +  +   A   ++Y+SC
Sbjct: 380 MKVVFN-----------EAFIAQHGKPDVIITDPPRDGMHAAVIDQILKIAPKKVVYVSC 428

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           N  +  RDL+++   + + R+   D FP T H+E  VLL  +
Sbjct: 429 NSATQARDLALMDEKYKVTRVRPVDMFPQTHHVENVVLLELR 470


>gi|116629999|ref|YP_815171.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           gasseri ATCC 33323]
 gi|238853814|ref|ZP_04644180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           202-4]
 gi|311110369|ref|ZP_07711766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           MV-22]
 gi|116095581|gb|ABJ60733.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus gasseri ATCC
           33323]
 gi|238833623|gb|EEQ25894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           202-4]
 gi|311065523|gb|EFQ45863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus gasseri
           MV-22]
          Length = 462

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 66/387 (17%), Positives = 135/387 (34%), Gaps = 40/387 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y +QL  K   + + +  +   +         I      HYR +A++ I  +   
Sbjct: 88  LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPAPNDWHYRNKAQYQIEFNKGK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               ++   ++  + +      +            LI+ L I +    R    ++  + +
Sbjct: 148 SKLGLYAPNSRRLIDLPEMPTQTKETQKTEREIKKLIDKLHIRIADFRRHNDGIKTIVVR 207

Query: 107 IDYLTSQSDQAIVTL---IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
               T +    ++T+   I    L  +       +                 NKT   L 
Sbjct: 208 QSQATGEIQVTLITIGKKIRDLKLLASQIMKLPNVVSVFQNETQWQNPQVWGNKTIKLLG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           + ++ E +        ++    +F Q N      +    L          L++ Y G G 
Sbjct: 268 KSHIIEEMLGK----KFKLSPRAFFQLNPEQTSTLYSEALKYLDLTPDQTLIDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++             L
Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKL------------L 371

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL    +  +        +Y+SCNP +L +DL +LS  + 
Sbjct: 372 PELKNQGVPIDALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSEAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +   D  P T   E    LV + +
Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRKN 458


>gi|333030806|ref|ZP_08458867.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM
           18011]
 gi|332741403|gb|EGJ71885.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM
           18011]
          Length = 475

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 143/401 (35%), Gaps = 59/401 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIW----------- 52
            YE Q+  K  ++   +          P   +  ++   YR + EF              
Sbjct: 91  PYEAQIRYKQHQIMDNLSRIGKVELPEPMPIMGSAKTTFYRNKLEFTFSDKRWLTQEEIN 150

Query: 53  ------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LR- 101
                  +  +           + + I+     + + N +   +        +    LR 
Sbjct: 151 LDKEFSGNQKNGLGFHIPGAFDKVLDIEKCWLQNDISNRIRNGVREFATANDISFFNLRE 210

Query: 102 --AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----------RLRDALHARKYQI 149
               L  +   TS + + +V L+     DDA  +              +   L+    ++
Sbjct: 211 QVGVLRSLVVRTSSTGELMVILVCKVEDDDAREQMMKVMEYMGNEFSEITSLLYIINNKM 270

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
             +       +   +D++ E +      L ++    SF Q N+      L  V      +
Sbjct: 271 NDVYTDQDVFLYKGKDHMIEEM----EGLQFKVGPKSFYQTNSEQAYE-LYKVARNFAQL 325

Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G+  + +LY G G  +  +++   +V+ +E    ++E A+ N   NH++N        K
Sbjct: 326 TGEELVYDLYTGTGTIANFVSKQAKKVIGIEYVPEAIEDAKINSEINHIDNTLFYAGDMK 385

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNP 325
           +              +D      +   I  DPPR+G+    + ++       I+Y+SCNP
Sbjct: 386 DILT-----------QDFINTHGQPDVIITDPPRAGMHQDVIDVLLFAEPKRIVYVSCNP 434

Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
            +  RDL +L   + +  +   D FP+T H+E  VLL ++ 
Sbjct: 435 ATQARDLQLLDNKYKVAAIQPVDMFPHTHHVENVVLLEKRN 475


>gi|153806599|ref|ZP_01959267.1| hypothetical protein BACCAC_00869 [Bacteroides caccae ATCC 43185]
 gi|149131276|gb|EDM22482.1| hypothetical protein BACCAC_00869 [Bacteroides caccae ATCC 43185]
          Length = 456

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +  ++   YR + EF              
Sbjct: 75  PYPEQIRYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTNEEVR 134

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 135 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAIRDYAYEHDYSFINLRTQE 194

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 195 GMLRNMIVRTSSTGELMVIVIC-KITEDHEMELFKQLLQFVADSFPEITSLLYIINNKCN 253

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +    D++ E +      L ++    SF Q N+    + L  V     G+ 
Sbjct: 254 DTINDLDVYVFKGNDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKVAREFAGLT 308

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 309 GNELVYDLYTGTGTIANFVSRRARQVIGIEYVPEAIEDAKVNAEINDIKNTLFYAGDMKD 368

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         ++      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 369 ILT-----------QEFINEHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 417

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 418 TQARDLQLLDEKYKVKAVQPVDMFPHTHHVENVVLLELR 456


>gi|291549934|emb|CBL26196.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14]
          Length = 456

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 150/395 (37%), Gaps = 48/395 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIW---H 53
            G +     YE+Q+  K  ++R++M                 +  HYR + EF       
Sbjct: 81  GGCMYQTMPYEEQVKMKEGQIRRIMDPVVKGEYLFEGVKHSPKEFHYRNKMEFSFGDEFK 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRA 102
           DG     +     T + +           ++ +++ ++   +               LR 
Sbjct: 141 DGPLSLGLHKKGSTYDVLTAGDCQLVHEDMDKILLCVLNYFKERNVSYYKKMQHVGYLRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
            L +    T +    +VT           + +    E   ++   LH     +  + +++
Sbjct: 201 LLLRRGDTTGEILVNLVTTTQEEYDLTPLVEELLALELEGKIVGILHILNDSLSDVVKSD 260

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           +T+I   +D+  E+L      L ++    SF QPN+     + E V      I   ++ +
Sbjct: 261 ETRILYGQDFFYEKLL----GLEFKITPFSFFQPNSKGAEVLYETVREYIGDIDNQVVFD 316

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           L+ G G    VLA    +V+ VEI + +VEAA+ N   N + N K +     +       
Sbjct: 317 LFSGTGTIGQVLAPVAKKVIGVEIIEEAVEAAKENAVRNGLYNCKFIAGDVFKVL----- 371

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333
                     D    +   I +DPPR G+    +  +  Y    I+YISC   SL RDL 
Sbjct: 372 ----------DEIEEKPDVIVLDPPRDGIHPKALPKILNYGVDKIVYISCKMTSLARDLE 421

Query: 334 ILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           ++    + +E++   DQF  T H+E    L R  S
Sbjct: 422 MMQLAGYRVEKMTAVDQFCETVHVEVVCCLHRVNS 456


>gi|227484668|ref|ZP_03914984.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237388|gb|EEI87403.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 417

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 163/373 (43%), Gaps = 40/373 (10%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
            T++  +YE Q+  K + +   +     +++ +++I  S+ + YR +    +  DG   Y
Sbjct: 77  CTIMDIKYENQIQIKKNLILSALAKSTSYKLEDIEIIPSKELRYRNKIRLQVEKDGRLAY 136

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-TIRLEPLLRAKLFQIDYLTSQSDQAI 118
           +  +   + + + I   +     I   + ++   T  +    +  + +I   T+ +D  +
Sbjct: 137 NKSY---SNDLVYIKDCLLVRENIGENLGKIEEITKDISEKFKGAIKEITVRTNGTDIML 193

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-CLDRDYVDERLTVAGRT 177
              +      D   E    +++   + K+ I +IG   K  I    +D+++ ++      
Sbjct: 194 NLDL------DNNNEPIAYIKEKYSSSKFFINIIG---KENINISGKDFLEYKICDK--- 241

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
             +R   N F Q N     ++         G    +L+LYCG+   S+ +  + DR++ V
Sbjct: 242 -TFRISGNDFYQVNDFQIENLYGQAKKL-LGSGKKVLDLYCGSATSSIAI--NGDRLVGV 297

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI K +++ A+ N   N + + K +  ++K   +               I   +  ++ V
Sbjct: 298 EINKNAIQDAKINAEINDLKDFKFIAKNAKYIDEKF-------------IKKEKIDSLIV 344

Query: 298 DPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTR 354
           DPPR+GLD   +  +       I+YISCNP +L RD++      + +E++   D FP T 
Sbjct: 345 DPPRAGLDKDLIKSIGKSGLKEIIYISCNPQTLARDINRFEKEGYKLEKIKAVDMFPQTM 404

Query: 355 HMECGVLLVRKPS 367
           H+EC  L+ R  S
Sbjct: 405 HVECIALIQRVKS 417


>gi|331269931|ref|YP_004396423.1| RNA methyltransferase, TrmA family [Clostridium botulinum
           BKT015925]
 gi|329126481|gb|AEB76426.1| RNA methyltransferase, TrmA family [Clostridium botulinum
           BKT015925]
          Length = 450

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 146/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIW--HDG 55
             +     YE+QL  K D++ ++     +   +        E   YR + EF       G
Sbjct: 79  GCSHQFLSYEKQLEIKKDQVLKLFENAGISGFEFLGIQGSPEEFEYRNKMEFTFGDMEKG 138

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMAT-----------IRLEPLLRAK 103
            +L   M  Q      +  D         N ++  ++             +  E  LR  
Sbjct: 139 GELTLGMHAQGKSFGIISADECKIVDSDFNIILKTVLEYFRGKDLPHYRIMSHEGYLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T      +VT          + E          L+  LH     +  + +A+ 
Sbjct: 199 VIRKGRNTQDIMVNLVTTSQRDFDLSEFVELLKGLNYKGELKGILHTVNDSLSDVVQADS 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            ++   RDY+ E +      L ++    SF Q N      +   V       +  ++ +L
Sbjct: 259 MEVLFGRDYIMEEVL----GLKFKISPFSFFQTNTKGAEALYSIVRDFMGDAKSKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    + A +  +V+ +E+ + + +AA  N   N +NN + +     +  + ++  
Sbjct: 315 YCGTGTIGQIAAHNASKVIGIELIEEAAKAANENAKLNGLNNCEFLAGDVAKVIKDIK-- 372

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 373 -------------VKPDIIILDPPRPGVHPDALKYVTKFNAKDIIYVSCNPKTLVEDLKF 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +E++ + D FP+T H+E  V L +
Sbjct: 420 LIKEGYKVEKVKIKDMFPHTPHVETVVRLSK 450


>gi|295133700|ref|YP_003584376.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87]
 gi|294981715|gb|ADF52180.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87]
          Length = 469

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 140/396 (35%), Gaps = 56/396 (14%)

Query: 9   QYEQQLAEKVDRLR---QMMLAFQVPN--LQIFRSEPIHYRMRAEFHI----WHDGDDLY 59
            Y+ QL  K   +    + +   ++P     +   E   YR + EF      W   +++ 
Sbjct: 91  DYKYQLDYKQQEVTNNLKRLGKIELPEITPILGSKEIYFYRNKMEFSFSDSRWLTLEEIQ 150

Query: 60  HIMFDQQTK-----------ERMRIDYFMPGSLLINALM-----------IEMMATIRLE 97
                +              + + I          NA+            I    T    
Sbjct: 151 SGKDFEDKNALGFHIPGMWDKILDIKKCHLQEDPSNAIRNFVKIFATQNEIPFFNTRAQN 210

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-- 155
            LLR  + +    T +    I     ++ + +      +     + + +Y I   G    
Sbjct: 211 GLLRTLMIRTSS-TGEIMVLIQFFEENKTVRELLLNAVVEEFPEITSLQYVINNKGNDTI 269

Query: 156 -NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
            ++  IC   RD++ E +      L ++    SF Q N+      L  +     G++G+ 
Sbjct: 270 YDQEVICYKGRDHIFEEM----EGLTFKINAKSFYQTNSAQAYE-LYKITREFAGLKGEE 324

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +LY G G  +  +A++   V+ VE    ++  A  N   N + N K      K+   
Sbjct: 325 LVYDLYTGTGTIAQFVAKNAKEVIGVEAVPEAISDAIENAKRNGITNTKFFAGDMKKVFT 384

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
                      ++          I  DPPR G+    V  +       I+Y+SCN  +  
Sbjct: 385 -----------QNFINKHGHPDVIITDPPRDGMHKDVVAQIINILPKKIVYVSCNSATQA 433

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL++L   + + ++   D FP T H+E  V L RK
Sbjct: 434 RDLALLDEYYKVTKVQPVDMFPQTFHVENVVCLERK 469


>gi|114567733|ref|YP_754887.1| tRNA (uracil-5-) -methyltransferase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338668|gb|ABI69516.1| tRNA (uracil-5-) -methyltransferase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 419

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 142/372 (38%), Gaps = 37/372 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGD- 56
                  +YE++L  K   ++  +        V    +   EP HYR +  +H+   G  
Sbjct: 73  GCAYQHAKYEEELVLKRQVVKDAIQRIAKIATVVEPVLSMPEPWHYRNKVTWHMAATGKQ 132

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-EPLLRAKLFQIDYLTSQSD 115
           +     F + +++ + I +    S  +N L   + A + L +P   +++   +     S 
Sbjct: 133 EPVLGFFREASRQLLPISHCRLISEKMNCLTARVKALLPLIQPATGSEITLRESSLDHST 192

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             I   +      + W E        L A    +  +     T   +      +RL    
Sbjct: 193 MLIWKGLQGWPAPEIWAE--------LSAISDSV--VVIEKNTCHYISGP---QRLLDKL 239

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
             + +     +F Q N      M+  +L+        +L+ +CG G+ +L LAR  +RV+
Sbjct: 240 GQVKFALSPGAFFQVNHCQAEEMIRLILSLVDFSGKTVLDAFCGVGSIALNLARQAERVI 299

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE  +P++  AR N     + NV+ +    +     +                     I
Sbjct: 300 GVESYEPAIHDARSNAIEAGIYNVEFIHGFCERVVARIDEP---------------IDVI 344

Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
            +DPPRSG     +      +   I+Y+SCNP +L RDL++     +    +   D FP 
Sbjct: 345 VLDPPRSGCKKELIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQPIDMFPR 404

Query: 353 TRHMECGVLLVR 364
           T H+E  VL+ R
Sbjct: 405 TYHVETVVLMSR 416


>gi|254245217|ref|ZP_04938539.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192]
 gi|126198595|gb|EAZ62658.1| hypothetical protein PA2G_06108 [Pseudomonas aeruginosa 2192]
          Length = 450

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 142/375 (37%), Gaps = 38/375 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             TL   ++ +QLA K   L++ +  F     +            YR RA   +  D   
Sbjct: 99  GCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARA 158

Query: 58  LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                      ++E +  D  +   P    I   +  ++   R    +          + 
Sbjct: 159 RRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTAS- 217

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
               A++      L+D    E   RL     A + Q+ L G      +    + +   L 
Sbjct: 218 ----ALLLRHTTALVD----EDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAE-LGYSLG 268

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
               TL YR     F Q NA +N  M+   L        + +L+L+CG GNFSL LAR  
Sbjct: 269 DWQLTLAYR--PGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRV 326

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSY 290
            RV+ VE     VE A  N  AN + N    +   SK   +A+  E+             
Sbjct: 327 ARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEALWAEQ------------- 373

Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348
            F  + +DPPR G  +A   M       ++Y+SCNP +L RD   ++   + ++R  + D
Sbjct: 374 GFTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILD 433

Query: 349 QFPYTRHMECGVLLV 363
            FP T H+E   L  
Sbjct: 434 MFPQTAHVEAMALFE 448


>gi|284054213|ref|ZP_06384423.1| 23S rRNA methyltransferase/RumA [Arthrospira platensis str. Paraca]
 gi|291569930|dbj|BAI92202.1| probable RNA methyltransferase [Arthrospira platensis NIES-39]
          Length = 461

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 137/396 (34%), Gaps = 53/396 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSE-PIHYRMRAEFHIWHDG- 55
                   Y  QL  K   +   +         P   +  S  P+ YR +  + +     
Sbjct: 82  GCQWQHIDYHFQLEAKRHLVVNALTKIGGFIEPPVAPVLPSPQPLAYRNKVTYPLRLSST 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----------RAKL 104
             +    + + +   + ++        +N L+  +   I+    L           R   
Sbjct: 142 GQVQAGYYQKASHRLINLNQCPVQDQHLNPLLANIKQDIQNRGWLVYNEQQHTGTIRHLS 201

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           F+I   T +    +V     L   +   + W +   +L                   T  
Sbjct: 202 FRIGRRTGEILLTLVVKDNNLPQLKEQAELWLQQYPQLVGVCLNLNSDRTNTILGKNTHC 261

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219
            + + Y+ E        L +R   ++F Q N      +L  + +       ++L + YCG
Sbjct: 262 LIGKPYIHEIFA----DLKFRLTADTFFQVNTEAAESLLSAISSELNLQGHEILVDAYCG 317

Query: 220 NGNFSLVLARHFD--------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            G F+L LA+           RV+ +E    +VE A  N   N +N+V+    S K+   
Sbjct: 318 IGTFTLPLAKQLGQNFPPKEIRVIGLESQAGAVEQAISNADLNDINHVQFRVGSVKQLLP 377

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329
            +                ++   + +DPPR G D   +  +       I+YISC P +L 
Sbjct: 378 KI---------------PFKPDIVVLDPPRQGCDRTVIQTLLNLQPQRIVYISCRPVTLA 422

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLV 363
           RDL +L     + + ++   D FP T H+EC   L 
Sbjct: 423 RDLQLLCENGIYQLTKVQPVDFFPQTSHVECAAFLT 458


>gi|227538859|ref|ZP_03968908.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241368|gb|EEI91383.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 469

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 145/400 (36%), Gaps = 52/400 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWH--- 53
                   Y  QL  K   +  ++              +   E  +YR + E+   +   
Sbjct: 85  GCKWQHMDYNGQLKFKQQTVDNVLARIGKVDTSLMEPILGSGETEYYRNKLEYTFSNKRW 144

Query: 54  ----DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
               D  +    M            + + ID+        NA+   + A      +    
Sbjct: 145 LTSVDDANEGLEMNALGFHVPGRFDKILDIDHCYLQQDPSNAIRNHIRAFAIKHQISFYD 204

Query: 100 LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
           LR     L  +   T+ + + +V +++    +         +  +       + +I +  
Sbjct: 205 LREHAGALRNLIIRTASTGELMVIVVFAYPEEGQVDLLMNDINSSFPDIDSLLYIINQKK 264

Query: 157 -------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                     I   RD++ E +      L Y+    SF Q N+      L  +     G+
Sbjct: 265 NDTIFDQDIHIFKGRDFIYEEM----EGLKYKIGPKSFYQTNSLQAYE-LYKITREFAGL 319

Query: 210 QGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            GD  + +LY G G  +  +A+    V+ VE    ++E A+ N A N + N K      K
Sbjct: 320 TGDELVYDLYTGAGTIANFVAKTAREVIGVEYVPTAIEDAKINSAINQIGNTKFYAGDMK 379

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325
           +   A           D      +   +  DPPR+G+    V  +       I+Y+SCN 
Sbjct: 380 DVLTA-----------DFIAEHGKPDVVITDPPRAGMHGDVVQRLLEMEADKIVYVSCNA 428

Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +  RDL++L+  +T++R+   D FP+T+H+E  VLL  K
Sbjct: 429 ATQARDLALLNEKYTVDRIKPVDMFPHTQHVENVVLLKLK 468


>gi|330719374|ref|ZP_08313974.1| 23S rRNA (uracil-5-)-methyltransferase [Leuconostoc fallax KCTC
           3537]
          Length = 460

 Score =  237 bits (606), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 145/386 (37%), Gaps = 43/386 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
            Y  QL  K  +++ +     +       +  ++P +YR +           L    F +
Sbjct: 94  SYTAQLEWKRQKVQTLFEKANINVNVAETVGMAQPSYYRNKTIVPTKWQNQQLQTGFFKR 153

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQS 114
            T E + +  +      I+  ++ +   +             E  +R  + +  Y + + 
Sbjct: 154 GTHELVPMTDYFVNDRKIDEAIVIVRNVLENYQISAFDPDTQEGAIRYIMVRRGYYSHEL 213

Query: 115 DQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
              +V+    L++ + +    +E    L+  +     +   +  +   +       + + 
Sbjct: 214 MVVLVSNQAELVHEQQIIRDLQEQLPELKSLIFNYSPKKDYVLLSPHNRTLWGEAAIHDT 273

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L      L +    NSF Q N  +   +        +    D +++ Y G G   + +A 
Sbjct: 274 LL----GLDFIIGPNSFYQVNPIMTEKLYTLAAQKAQLKPTDIVIDAYSGIGTIGISVAN 329

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +VL VE+   +V  A+ N+  NH++N   +   + E     +               
Sbjct: 330 KVKQVLGVEVVAGAVADAQLNVDTNHIDNATFLLNDAPEQMALWQE------------QG 377

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD-LSILSTTHTIE-RLA 345
            +   IFVDPPR GL  + +  V   A    +YISCNP +L RD   IL+  + IE  + 
Sbjct: 378 IKPDVIFVDPPRRGLTKSLIDSVADMAPKRFVYISCNPVTLVRDTAEILTKGYHIEGDVQ 437

Query: 346 LFDQFPYTRHMECGVLLVRKPSGWHQ 371
             DQFP T H+E  V+  R     H+
Sbjct: 438 TVDQFPQTSHIETIVVFTR----HHE 459


>gi|218893098|ref|YP_002441967.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           LESB58]
 gi|218773326|emb|CAW29138.1| probable RNA methyltransferase [Pseudomonas aeruginosa LESB58]
          Length = 450

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 138/374 (36%), Gaps = 36/374 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             TL   ++ +QLA K   L++ +  F     +            YR RA   +  D   
Sbjct: 99  GCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARA 158

Query: 58  LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                      ++E +  D  +   P    I   +  ++   R    +          + 
Sbjct: 159 RRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTAS- 217

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
               A++      L+D    E   RL     A + Q+ L G      +    + +   L 
Sbjct: 218 ----ALLLRHTTALVD----EDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAE-LGYSLG 268

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
               TL YR     F Q NA +N  M+   L        + +L+L+CG GNFSL LAR  
Sbjct: 269 DWQLTLAYR--PGDFVQVNAPMNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRV 326

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV+ VE     VE A  N  AN + N    +    +             L +       
Sbjct: 327 ARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKA------------LAEAPWAEQG 374

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
           F  + +DPPR G  +A   M       ++Y+SCNP +L RD   ++   + ++R  + D 
Sbjct: 375 FTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 434

Query: 350 FPYTRHMECGVLLV 363
           FP T H+E   L  
Sbjct: 435 FPQTAHVEAMALFE 448


>gi|222617909|gb|EEE54041.1| hypothetical protein OsJ_00721 [Oryza sativa Japonica Group]
          Length = 558

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 150/434 (34%), Gaps = 89/434 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--------------IHYRMRA 47
                   Y  Q+  K  ++R++++ F   + +   S                  YR + 
Sbjct: 140 GCKAQSLAYAAQIRHKHLQVRELLVNFGKFDPRKMESSEPDAILKPIVPCDEIFRYRNKM 199

Query: 48  EFHI---------WHDGDDLYHIM--------FDQQTK------ERMRIDYFMPGSLLIN 84
           EF           W +  D   +         +           + + ++  +  S   +
Sbjct: 200 EFSFGTKRWMQREWKEEKDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVEKCLLQSEPAD 259

Query: 85  ALMIEMMATIRLEPL-------------LRAKLFQID-YLTSQSDQAIV---TLIYHRLL 127
            ++  +  T     L             L+  + +    +T+ + + +V   T  Y   L
Sbjct: 260 KVLAIVQETWLDPALGLTPYDVHKHVGFLKHLMIRTGRNITTGAPEVMVNFVTSCYKPEL 319

Query: 128 DDAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
            +       ++ +    ++     +       +      +  + E L    R L ++   
Sbjct: 320 LEPLVNNITKIPEVVSIMNNVNTSVGNTSVGEEEYTLYGKPTITEML----RGLTFQISA 375

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           NSF Q N      +L  ++  + G++GD    +L+L+CG G   L LAR    V   E+ 
Sbjct: 376 NSFFQTNTKQAD-VLYKLIGESAGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVV 434

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ N   N ++N   V+    +  +   +E              +   I  DP 
Sbjct: 435 PEAIADAKKNAKLNGISNATFVQGDLNKINETFGKEF------------PKPDIIISDPN 482

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQ 349
           R G+    +  +     P I+Y+SCNP +  RDL  L            + ++ +   D 
Sbjct: 483 RPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLKGCYELKTVIPVDM 542

Query: 350 FPYTRHMECGVLLV 363
           FP+T H+EC  +L 
Sbjct: 543 FPHTPHIECICVLE 556


>gi|86132735|ref|ZP_01051327.1| RNA methyltransferase, TrmA family [Dokdonia donghaensis MED134]
 gi|85816689|gb|EAQ37875.1| RNA methyltransferase, TrmA family [Dokdonia donghaensis MED134]
          Length = 471

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 134/399 (33%), Gaps = 48/399 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQ---MMLAFQVPN--LQIFRSEPIHYRMRAEFHI----W 52
                   Y+ QL  K   +      +   ++P         E   YR + EF      W
Sbjct: 85  GCKWQHMDYKYQLEYKQQEVVNNLTRLGKIELPEVTPIAGSKEQYFYRNKMEFGFSDSKW 144

Query: 53  HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
              + +      +              + + I+         NA+   +        +  
Sbjct: 145 LTLEQIKSGEMIEDRNALGFHIAGMWDKILDIEKCHLQRDPSNAIRNGIKEFATANDMAF 204

Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  +   TS + + +V L+     D   RE  +            +  +  
Sbjct: 205 YNARNQEGLLRTLMIRTSTTGELMV-LVQFYKEDVQKRELLLNYIKDTFTEVTSLLYVIN 263

Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                   D++ +     + +      L ++    SF Q N+      L  +     G+ 
Sbjct: 264 GKGNDTIYDQEVICYAGRDHIFEEMEGLKFKINAKSFYQTNSEQAYE-LYKITRDFAGLT 322

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  +A+   +V+ VE    ++ AA+ N   N + N +      K+
Sbjct: 323 GNELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPDAITAAKENAKLNGIENAEFFVGDMKK 382

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
              +           +          I  DPPR G+    V  +   +   I+Y+SCN  
Sbjct: 383 VFNS-----------EFIATHGEPDIIITDPPRDGMHKDVVDQILNISPQKIVYVSCNSA 431

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL++L   + + ++   D FP T H+E  VLL ++
Sbjct: 432 TQARDLALLDDVYKVTKVQPVDMFPQTHHVENVVLLEKR 470


>gi|323499990|ref|ZP_08104946.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio sinaloensis DSM 21326]
 gi|323314956|gb|EGA68011.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio sinaloensis DSM 21326]
          Length = 439

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 152/372 (40%), Gaps = 32/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58
              +      QQ   K   LRQ++  F   N  +          YR RA   +  D    
Sbjct: 90  GCNMQHLNVAQQREHKQQTLRQLVRKFAGHNADLDAPIIGSDKGYRRRARISVMLDKKSR 149

Query: 59  Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                   +Q+K+ + +         +N L+  +   +         L  ++ +   +++
Sbjct: 150 QLKFGFRKKQSKDIVDVTDCPVLDQSLNQLLPGLKKLLDGF-ANPESLGHVELVKGDNNR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTVAG 175
            IV     R L     +    L       +  + L+  +++  +I  ++ Y  E    AG
Sbjct: 209 VIVL----RHLKALAEKDQSALEAFATEHQACLYLMPESDRLERIVGEQAYYLE----AG 260

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
            T+ +    N+F Q N  +N  M+E  L       Q  +L+L+CG GNFSL +A+   RV
Sbjct: 261 VTIPFE--PNNFIQVNQQVNQSMVEQALDWLALDKQDRVLDLFCGLGNFSLPMAKRVKRV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE AR N   NH+ N    + + ++             +      S +F  
Sbjct: 319 VGVEGVDAMVEKARTNAELNHLGNAHFFQANLEQ------------EMSGQPWASEKFDK 366

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           I +DP R+G       + +     ++Y+SCNP +L RD  S+L+    +++L + D FP+
Sbjct: 367 ILLDPARAGASGIVEQLSELGATRVVYVSCNPATLARDSQSLLNQGFHLKKLGMLDMFPH 426

Query: 353 TRHMECGVLLVR 364
           T H+E   L V+
Sbjct: 427 TSHLESMALFVK 438


>gi|127512133|ref|YP_001093330.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella loihica
           PV-4]
 gi|126637428|gb|ABO23071.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella loihica
           PV-4]
          Length = 444

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 142/372 (38%), Gaps = 31/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEF--HIWHD 54
              L   +   Q   K   L  ++        Q   SEP      HYR RA        D
Sbjct: 91  GCDLQHLELSAQRDAKQTALENLINKMGRTQPQT-MSEPLSGEGWHYRRRARLATQYLRD 149

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
              L        + E + ID     +  ++ L+  +   +      R+ L  ++ L+  S
Sbjct: 150 TKQLNLGFRALASSEVVNIDACPVLAKSLSELIAPLNQCLNRLSAKRS-LGHVELLSVDS 208

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
              +V  I   L D    +    L       K ++ L+   +K +     + +       
Sbjct: 209 GPCVVLRITSPLND----KDKALLATFGEQHKVRLVLLDDDSKLETLWGDEGLPYYTLED 264

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G +L +     +F Q N  IN  M+   +   +   G+ +L+L+CG GNF+L LA+   +
Sbjct: 265 GSSLGF--SPGNFIQVNGEINQQMVTQAIDWLQIQPGERVLDLFCGVGNFTLPLAKAGAQ 322

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE     V  AR N   + V   +         +  +       R+           
Sbjct: 323 VVGVEGVDAMVAQARVNATMSGVEGAEFYHGD---LSADLSAAPWLGRI----------D 369

Query: 294 TIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFP 351
            + +DP R+G  ++   + +  P  I+YISCNP SL RD   +L+  + + RL L D FP
Sbjct: 370 KLLLDPARAGAYESLQWLKKMKPKAIVYISCNPVSLARDCEPLLAQGYQLSRLGLIDMFP 429

Query: 352 YTRHMECGVLLV 363
            T H+E   L  
Sbjct: 430 QTHHIEAMALFE 441


>gi|167762843|ref|ZP_02434970.1| hypothetical protein BACSTE_01201 [Bacteroides stercoris ATCC
           43183]
 gi|167699183|gb|EDS15762.1| hypothetical protein BACSTE_01201 [Bacteroides stercoris ATCC
           43183]
          Length = 480

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 143/399 (35%), Gaps = 57/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55
            Y +Q+  K  ++   +              +  ++   YR + EF   +          
Sbjct: 91  PYSEQIRYKQKQVTDNLTRIGKVELPEISPILGSAKTEFYRNKLEFTFSNKRWLTAEEVR 150

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
            + +Y  M            + + I+       + N +   +             LR   
Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHNYPFINLRTHE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V LI     D+     ++    + D        + +I    N 
Sbjct: 211 GMLRNMIVRTSTTGELMVILICKIEKDEEMELFKQLLQYVADTFPEITSLLYIINNKCND 270

Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T   L       +D++ E +      L ++    SF Q N+    + L  V     G+ G
Sbjct: 271 TITDLDVHTFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQA-YTLYKVARNFAGLTG 325

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  ++    +V+ +E    ++E A+ N   N + N        K+ 
Sbjct: 326 NELVYDLYTGTGTIANFVSGQARQVIGIEYVPEAIEDAKVNSEINGIRNTLFFAGDMKDM 385

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                        +D      R   I  DPPR+G+    V ++       I+Y+SCNP +
Sbjct: 386 LT-----------QDFINEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPAT 434

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             RDL +L   + ++ +   D FP+T H+E  VLL  K 
Sbjct: 435 QARDLQLLDAKYRVKAVQPVDMFPHTHHVENVVLLELKN 473


>gi|90580331|ref|ZP_01236138.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
 gi|90438633|gb|EAS63817.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
          Length = 450

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 151/382 (39%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53
              L    ++ Q+  K   L ++M  F +            + +SE  HYR  A F +  
Sbjct: 89  GCNLQHLSHQGQVIAKQQALSELMAKFAITEKDDAAQVEPIVGQSE--HYRRCARFSVRM 146

Query: 54  -DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                +      +Q+K+ + ++     +  +N L+  +   +      +  +  I+ + +
Sbjct: 147 LPNGKMVFGFRKKQSKDIVDVNACPVLATTLNDLLPPLRELLSNLKGRKH-VGHIELVNA 205

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
            + + ++     R L          ++         + L   +++    L      E+  
Sbjct: 206 DNGRVLLI----RHLQPFNDNDLAAIKAFATEHALMLFLAPSSDELDHVLG-----EQPY 256

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
                +        F Q N  +NV M+E  +       Q  +L+L+CG GNFSL LAR  
Sbjct: 257 YDIDDVRLTFSPKDFIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRA 316

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE     V  A  N AAN ++N    + +  E    +   +E            +
Sbjct: 317 KAVVGVEGVDEMVARATANAAANGLDNATFYQANLDEDVTKLVWAQE------------Q 364

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQ 349
           F  I +DP R+G       +V   P  ++Y+SCNP +L RD   +L   + + RL + D 
Sbjct: 365 FDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDM 424

Query: 350 FPYTRHMECGVLLVRKPSGWHQ 371
           FP+T H+E   L V+  +  H+
Sbjct: 425 FPHTGHLESMTLFVK--TNHHK 444


>gi|258648401|ref|ZP_05735870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella tannerae
           ATCC 51259]
 gi|260851571|gb|EEX71440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella tannerae
           ATCC 51259]
          Length = 473

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 145/398 (36%), Gaps = 52/398 (13%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHI----WHD 54
            L    YE+QL  K  ++   +      +       I   +   YR + EF      W  
Sbjct: 89  CLP---YEEQLKAKQQQVEDALARIGKVSFPNISPIIGSKKTKAYRNKLEFGFSNKKWLT 145

Query: 55  GDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
            +++   +                 + + +          N +   + + I  +      
Sbjct: 146 KEEIESRVVFPDMNAVGFHIPGAFDKILDLKECFLMDDFNNRIRNGLRSYIIEKGYSFFD 205

Query: 100 LR---AKLFQIDYLTSQSDQAIVTL---IYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153
           LR     L  +    + + + +V L   I     +   ++    ++         + +  
Sbjct: 206 LRNQTGLLRNMMLRKTSTGEIMVLLQFSIREAQEEKEAQDVLQWIKTTFPEITSLLYVNN 265

Query: 154 RA-NKT--KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
              N T   + +      + +      L ++    SF Q N+      L  V+     + 
Sbjct: 266 TKCNDTISDLDIHTYSGTDCIYEQMEDLQFKIGPKSFYQTNSEQAFT-LYKVVREFANLS 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G+  + +LY G G  +  +A    RV+ +E    +++ A+ N   N+++N++      K+
Sbjct: 325 GNEYVYDLYTGTGTIANFIAGKAKRVIGIEYVPEAIKDAKENAVLNNLDNIQFFAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                          D      R   I  DPPR+G+ +  +  +   A   I+Y+SCNP 
Sbjct: 385 ILTD-----------DFVALYGRPDVIITDPPRAGMHNDVISTILFAAPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  RD+S+LST + I ++   D FP T H+E  +L+ R
Sbjct: 434 TQARDVSLLSTDYHITKVQPVDMFPQTHHVENVLLMER 471


>gi|161507161|ref|YP_001577115.1| RNA methyltransferase family protein [Lactobacillus helveticus DPC
           4571]
 gi|260102926|ref|ZP_05753163.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           helveticus DSM 20075]
 gi|160348150|gb|ABX26824.1| RNA methyltransferase family protein [Lactobacillus helveticus DPC
           4571]
 gi|260083270|gb|EEW67390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           helveticus DSM 20075]
          Length = 460

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 142/386 (36%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    YE+QL  K + + + +  +   N         I   +  HYR +A++ I +    
Sbjct: 91  LAHLSYEKQLEFKRNNMLESLRKYHPRNYAKYKVKKTIPAPDEWHYRNKAQYQIENIHGK 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               +F   +   + +      S            LI  L + +    R  P ++  + +
Sbjct: 151 TKLGLFAPNSHRLIDLPKMPTQSEDTQKTEREIKVLIEKLHVPVANFRRHLPGVKTIVVR 210

Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163
               T +    ++T+ +  + L    +E      +                 NKT+  L 
Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDNVVSVYQNETEWQNPQVWGNKTEKLLG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           ++ + E +      L       +F Q N    V++    L          L++ Y G G 
Sbjct: 271 KNQIMEEILGKKFAL----SPRAFFQLNPVQTVNLYSEALKYLDLTPDQTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S ++             L
Sbjct: 327 LGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV------------L 374

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL    +  +        +YISCNP +L +DL +LS  + 
Sbjct: 375 PELKNSGVSIDALIVDPPRTGLAKKLIKTLLQVKPETFVYISCNPSTLAQDLVLLSEVYD 434

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           I  +   D  P T   E    LV + 
Sbjct: 435 IRVIQNVDMLPQTPRCEAIAKLVLRK 460


>gi|120436238|ref|YP_861924.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803]
 gi|117578388|emb|CAL66857.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803]
          Length = 469

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 148/406 (36%), Gaps = 62/406 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQ---MMLAFQVPN--LQIFRSEPIHYRMRAEFHI----W 52
                  +Y+ QL  K D +      +   ++P     +   E   YR + EF      W
Sbjct: 84  GCKWQNMEYKFQLEYKQDEVENNLRRLGKIELPEITPILGSEEIYFYRNKMEFSFSDSRW 143

Query: 53  HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALM-----------IEM 90
              +++      QQ             + + I+     +   NA+            +  
Sbjct: 144 LTQEEIQSGEDIQQRNALGFHIPGMWDKILDIEKCHLQADPSNAIRNFVKEFAIENDLAF 203

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
             T   E LLR  + +    T+ + + ++ + + +   +        L +          
Sbjct: 204 FNTRNQEGLLRTLMIR----TTSTGEIMILVQFFKEDQEKRELLLNALAEKFPEITSLQY 259

Query: 151 LIGRA------NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
           ++         ++  IC   RD++ E +      L ++    SF Q N+    + L  + 
Sbjct: 260 VVNTKANDTIYDQEVICFKGRDHIFEEM----EGLKFKINAKSFYQTNSEQAYN-LYKIT 314

Query: 204 AATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                ++GD  + +LY G G  +  +A++  +V+ VE    +++ A+ N   N + NV+ 
Sbjct: 315 RDYANLKGDELVYDLYTGTGTIAQFVAKNAKKVIGVEAVPEAIKDAKENAERNKIQNVEF 374

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHIL 319
                K+              +           I  DPPR G+    V  +       I+
Sbjct: 375 YVGDMKKVFT-----------ESFINKHGHPDVIITDPPRDGMHKDVVAQIIGILPERIV 423

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           Y+SCN  +  RDLS+L   + + ++   D FP T H+E  V L ++
Sbjct: 424 YVSCNSATQARDLSLLDEHYKVTQIQAVDMFPQTHHVENVVCLEKR 469


>gi|256826666|ref|YP_003150625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum
           DSM 15641]
 gi|256582809|gb|ACU93943.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum
           DSM 15641]
          Length = 543

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 148/438 (33%), Gaps = 94/438 (21%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRA--EF------ 49
             + + + Y  QL  K   + ++              I   +P  +R +    F      
Sbjct: 117 GCSHIEEPYAHQLKRKQYFIAELFADEIKAGCTLEPIIGMEDPFGFRNKIASPFAPVRSS 176

Query: 50  ----HIWHDGDD--------------------------------LYHIMFDQQTKERMRI 73
                + H                                    + + ++   T   +R 
Sbjct: 177 RTGKRVRHTKSGDATLQQDTAARQRKTSVNSLSRSRSTSSAVSSMRYGLYAAGTHRLIRA 236

Query: 74  DYFMPGSLL---INALMIEMMATIRLEPL--------LRAKLFQIDYLTSQSDQAIVTLI 122
           D       +   + A   ++M    + P         +R  + ++ +   +SD+ +VTL+
Sbjct: 237 DKCPVEHPIGRRVVAATAQLMRKWDIAPYDEDAGTGFMRHVIVRVGH---ESDEVLVTLV 293

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDERLTVAG 175
            +  +  + +  A  L+         +Q +           + ++     ++ + L    
Sbjct: 294 TNGKVFPSGKNFARHLKKHCPEITTVVQNVNMRSTNAIFGGEEQVLYGPGFILDTLC--- 350

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHF 231
             L +R   +SF Q NA     +    L             +L+ YCG G   LV A   
Sbjct: 351 -GLSFRISSHSFYQVNAVQTEVLYRTALEMAACTSSHQALTILDAYCGTGTIGLVAASQV 409

Query: 232 --DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ ++ A  S+  AR N   N + N   +   + +F            L      S
Sbjct: 410 PNSQVIGIDNASSSIRDARQNAVHNGIANATFLCEDATDF------------LLHRAAAS 457

Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLAL 346
                + +DPPR+G     +      A   ++YISCNP +  RD+ + +   + + RL  
Sbjct: 458 DSIDVLMMDPPRAGSTSEFIEAACALAPERVVYISCNPATQKRDVRLFARGGYHLVRLRA 517

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E   LL+R
Sbjct: 518 VDMFPHTDHIETVALLMR 535


>gi|212634201|ref|YP_002310726.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella
           piezotolerans WP3]
 gi|226725392|sp|B8CJP2|RUMA_SHEPW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|212555685|gb|ACJ28139.1| RNA methyltransferase, TrmA family [Shewanella piezotolerans WP3]
          Length = 445

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 143/372 (38%), Gaps = 30/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57
              L     E Q A K   L++++  F         +     P HYR RA    W D   
Sbjct: 91  GCDLQHLNVESQRAHKAKALQELVAKFAQTTASQVCETLSDSPWHYRRRARLATWFDKKT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         + + + I   +  +  ++AL+ E+ A +  +   +  L  ++ LT   +
Sbjct: 151 KHISLGFRASSSSDVVEIQSCVVLAKPLSALIPEL-AFLLNQLSGKKALGHVE-LTLADN 208

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L   + L D   +   RL +   +    + L      T+            +   
Sbjct: 209 GIFVVLRVTKALSD---KDRQRLAEFGASHSLNMLLQDDDANTESLSGHGQ-QPFYSFND 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
                +    +F Q NA +N  M+   +        + +L+L+CG GNFSL LA+    V
Sbjct: 265 SDAELKFSAGNFIQVNASVNQAMVNQAVDWLAPQANERVLDLFCGIGNFSLPLAKSGAEV 324

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFK 293
           + VE     VE A  N     ++ V       S + +Q                   +  
Sbjct: 325 IGVEGVPAMVEQATVNAKGAALDKVSFYHADLSADLSQQPW--------------LGKVD 370

Query: 294 TIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFP 351
            + +DP R+G  ++ + + +  P  ++Y+SCNP SL RD   IL   + + ++A+ D FP
Sbjct: 371 KMLIDPARAGAYESMLSLKKLKPQALVYVSCNPASLARDSEVILKQGYRLTKIAMVDMFP 430

Query: 352 YTRHMECGVLLV 363
            T H+E   L  
Sbjct: 431 QTHHLESMALFE 442


>gi|332879258|ref|ZP_08446955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332682678|gb|EGJ55578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 491

 Score =  237 bits (604), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 142/399 (35%), Gaps = 52/399 (13%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG--- 55
            L    YE+QL  K  ++   +              +   +   YR + EF   +     
Sbjct: 107 CLP---YEEQLKYKQQQVLDNLTRIGKVELDGIQPILGSVKTEEYRNKLEFGFSNKRWLT 163

Query: 56  -----------DDLYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLL--- 100
                       +         + +++  I+       + N +   +        L    
Sbjct: 164 PEEIASGNAYTQNGAVGFHTSGSFDKILPIEQCRLMDDINNRIRNAIRDYGYEHQLTFHD 223

Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
               A L +   + + +   ++ L+   + DD  +  A  L   L     +I  +   N 
Sbjct: 224 QREHAGLLRNMMIRNSNTGELMLLMQFCITDDTEKAQAEALMGYLAETFPEITSLLYVNN 283

Query: 158 TK---ICLDRDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
            K      D D +     + + +    L ++    SF Q N       L  V     G+ 
Sbjct: 284 LKYNDTIGDLDVITFRGNDHIYLQMENLRFKVGPKSFYQTNTDQAYE-LYKVARDFAGLT 342

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G   + +LY G G  +  +A    +V+ +E    ++E A+ N   N + N        K+
Sbjct: 343 GTELVYDLYTGTGTIANFVAGKARKVIGIEYVPEAIEDAKINSQINGIGNTLFFAGDMKD 402

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         K+      +   I  DPPR+G+    +  +   A   I+Y+SCNP 
Sbjct: 403 ILN-----------KEFITAHGQPDVIITDPPRAGMHKDVIETILFAAPHRIVYVSCNPA 451

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL++L + + I  +   D FP+T+H+E  V+L R+
Sbjct: 452 TQARDLALLDSQYKIMGVRPVDMFPHTQHVENVVMLERR 490


>gi|323466981|gb|ADX70668.1| RNA methyltransferase family protein [Lactobacillus helveticus H10]
          Length = 460

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 142/386 (36%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    YE+QL  K + + + +  +   N         I   +  HYR +A++ I +    
Sbjct: 91  LAHLSYEKQLEFKRNNMLESLRKYHPRNYAKYKVKKTIPAPDEWHYRNKAQYQIENIHGK 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               +F   +   + +      S            LI  L + +    R  P ++  + +
Sbjct: 151 TKLGLFAPNSHRLIDLPKMPTQSEDTQKTEREIKVLIEKLHVPVANFRRHLPGVKTIVVR 210

Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163
               T +    ++T+ +  + L    +E      +                 NKT+  L 
Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDNVVSVYQNETEWQNPQVWGNKTEKLLG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           ++ + E +      L       +F Q N    V++    L          L++ Y G G 
Sbjct: 271 KNQIMEEILGKKFAL----SPRAFFQLNPVQTVNLYSEALKYLDLTPDQTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S ++             L
Sbjct: 327 LGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKV------------L 374

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL    +  +        +YISCNP +L +DL +LS  + 
Sbjct: 375 PELKNSGVSIDALIVDPPRTGLAKKLIKTLLQVKPETFVYISCNPSTLAQDLVLLSEVYD 434

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLVLRK 460


>gi|84390110|ref|ZP_00991372.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01]
 gi|84376764|gb|EAP93639.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio splendidus 12B01]
          Length = 439

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 143/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L    Y  Q+  K   L  +M  +Q  N ++      +   YR RA   ++ D    
Sbjct: 90  GCHLQHLGYASQVEHKSQSLTHLMSQYQTANTEVVEPIVGDETGYRRRARISLFVDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K+   I         +N L+ ++ + +     L   L  ++ +   +  
Sbjct: 150 QLQFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLLNTFSNL-TSLGHVELVLGDTGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +V     R L     +    L     A    +  +   +K    +         +  G 
Sbjct: 209 VMVL----RHLKPLVEKDEQALIALAKAEGATLYTMPETDKIVRLVGDAPA---YSETGV 261

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
           TL +    N F Q N  +N  M+   +   +    + +L+L+CG GNFSL +A+    V+
Sbjct: 262 TLPFE--PNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDLFCGLGNFSLPIAQQSAFVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     V+ A  N   N ++N +  + + +E             L        RF  I
Sbjct: 320 GVEGVDEMVQQATSNATLNQLSNTEFYQANLEE------------ELSSQPWAKERFDKI 367

Query: 296 FVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
            +DP R+G       +       ++Y+SCNP +L RD   L    + +++L + D FP+T
Sbjct: 368 LLDPARAGASGIVDQISGLGAKRVVYVSCNPATLARDSESLEKQGYQLDKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L ++
Sbjct: 428 SHLESMALFIK 438


>gi|332299402|ref|YP_004441323.1| RNA methyltransferase, TrmA family [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176465|gb|AEE12155.1| RNA methyltransferase, TrmA family [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 493

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 142/408 (34%), Gaps = 61/408 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG-------- 55
            YE+QL  K  +    M       ++     +   +P HYR + EF              
Sbjct: 91  PYEEQLRGKAQQAADAMTRIGHIEIEETEPIVGCEDPWHYRNKVEFTFSKKRWLTEEELK 150

Query: 56  --------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107
                    +L  + F +       +D       + + +  E+   +    L R + +  
Sbjct: 151 SLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASEIRDYLNDYCLARWEEYPY 210

Query: 108 DYLTSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
               +        LI    L          +   E  I+L +AL  R  QI  +     T
Sbjct: 211 YDQRAHEGVMRTLLIRTTTLGGLMVLIAFAEGTEELRIQLLEALRMRFPQITSLYYMVNT 270

Query: 159 K-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           K           +     Y++E +      L YR    SF Q N+     + E V    +
Sbjct: 271 KFNDSLADLPAQLYSGAPYIEEDMH----GLRYRIGPKSFYQTNSRQAERLYEKVREYAQ 326

Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               +++ +LY G G  +  LA+    V+ +E    +VE A  N   N + N        
Sbjct: 327 LTGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNGITNATFYAGDM 386

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324
           K                D      R   +  DPPR+G+D   V ++   A   I+Y+SCN
Sbjct: 387 KAILTD-----------DFVAAHGRPDVLVTDPPRAGMDTPVVDVILRAAPQRIVYVSCN 435

Query: 325 PDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           P +  RDL++L     +   R    D FP+T H+E   LL +  +  H
Sbjct: 436 PATQARDLALLMAEGQYRAVRACAVDMFPHTHHVETVALLSKLNTEHH 483


>gi|126661911|ref|ZP_01732910.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38]
 gi|126625290|gb|EAZ95979.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38]
          Length = 470

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 140/402 (34%), Gaps = 54/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQ--IFRSEPIHYRMRAEFHIWH--- 53
                  +Y QQL  K   +   +      ++P  +  +   +   YR + EF   +   
Sbjct: 85  GCKWQNMKYSQQLFYKNQEVYNNLKRIGKIELPEFEAILGSEKQFFYRNKMEFGFSNARW 144

Query: 54  ------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
                       D  +       +   + + I+         N +  E+        L  
Sbjct: 145 MTDAEIQSGTEFDNKNALGFHIPRMWDKILDIEKCHLQEDPSNEIRNEIKRFANENNLTF 204

Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                +   L  +   T+ + + +V + ++    +        L +          +I +
Sbjct: 205 FNARAVEGLLRTLMIRTASTGEIMVLIQFYENDKNGIELMMNFLAERFPQITSLQYVINQ 264

Query: 155 A-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
                     I L   RDY+ E +      L +     SF Q N+      L  +     
Sbjct: 265 KLNDTLYDQDIILFKGRDYILEEM----EGLHFSINAKSFYQTNSDQAYE-LYKITREFA 319

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + +LY G G  +  +++   +V+ VE    ++  A+ N   N++ N +     
Sbjct: 320 GLTGNETVYDLYTGTGTIAQFVSKQAKKVIGVEAVPEAIIDAKANATRNNITNCEFYVGD 379

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISC 323
            K                +      +   I  DPPR G+    V M+     P I+Y+SC
Sbjct: 380 MKNVFND-----------EFINQHGQPDVIITDPPRDGMHKDVVEMLLKTDVPKIVYVSC 428

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           N  +  RDL+++   + + R+   D FP T H+E  VLL ++
Sbjct: 429 NSATQARDLALMDEKYKVVRVRPVDMFPQTHHVENVVLLEKR 470


>gi|188995054|ref|YP_001929306.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277]
 gi|188594734|dbj|BAG33709.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277]
          Length = 478

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 150/408 (36%), Gaps = 61/408 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWH--- 53
                   YE QL  K  ++   ++      ++     +   +  +YR + EF   +   
Sbjct: 84  GCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNKLEFTFSNKRW 143

Query: 54  ---------DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEP 98
                    DGD    + +           + + I     G+ + + + + +      +P
Sbjct: 144 LLPEEVREVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRLFIREYCMQDP 203

Query: 99  LL---------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
                         +  +   T+ + + +V +++ R    A       + +        +
Sbjct: 204 ERYPFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAREALLAAVAERFPQITSLL 263

Query: 150 QLIGRA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
            +I           ++ L   R+Y++E +      L ++    SF Q N+    + L  +
Sbjct: 264 YVINTKCNDTIGDQEVLLYHGREYIEEEM----EGLKFKIGAKSFYQTNSRQA-YQLYRI 318

Query: 203 LAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                G+ GD  + +LY G G  +  +A    RV+ +E    ++E AR N   N + N  
Sbjct: 319 AREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTL 378

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318
                 K+               D      R   +  DPPR+G+ ++ +  +   A   I
Sbjct: 379 FYAGDMKDILT-----------NDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPKRI 427

Query: 319 LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +Y+SCNP +  RDL++L     +   +    D FP+T H+E  VLLVR
Sbjct: 428 VYVSCNPATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVR 475


>gi|78189981|ref|YP_380319.1| 23S rRNA methyltransferase/RumA [Chlorobium chlorochromatii CaD3]
 gi|78172180|gb|ABB29276.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium chlorochromatii
           CaD3]
          Length = 477

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/411 (20%), Positives = 154/411 (37%), Gaps = 69/411 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRS-EPIHYRMRAEFHIWHDGD 56
              L+    E QL  K  ++   +         P   +     P+HYR + EF       
Sbjct: 87  GCKLMHVCNEAQLRYKQKKVSDALKHLGDFVEPPVASVLAGTSPLHYRNKMEFSF----A 142

Query: 57  DLYHIMFDQ-------QTKE-------------RMRIDYFMPGSLLINALMIEMMATIRL 96
              ++M ++       ++KE              + IDY       +N ++         
Sbjct: 143 AKRYLMPEELSLTELSRSKEFALGFHTPGNFEKVIDIDYCYLARNEMNQVLELTRRFALQ 202

Query: 97  EPL-----------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
             L           LR  + +    +  + + +V L+      +     +  L  A+  +
Sbjct: 203 HALPPYSVKTHTGFLRNLVVR---FSEHTQELMVNLVTSWHDAEVMARYSAMLHHAMPEQ 259

Query: 146 KYQIQLIGRANK--------TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           K  +     + K          +     ++ ERL      L +R   NSF Q N+     
Sbjct: 260 KMTVVNNITSRKNGVATGEEEVVISGEGFITERLC----GLDFRISANSFFQTNSAQAEV 315

Query: 198 MLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + + +LA A       + +LYCG G  +L +A H  +V+ +E+ + ++  A+ N   N +
Sbjct: 316 LYQTLLAVADLQPTDTVYDLYCGTGTITLCMAAHCHQVIGLEVVESAIRDAQNNALRNGI 375

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAY 315
            N   +    K+F   +    E            + + I  DPPR+G+    +  MVQ  
Sbjct: 376 TNAHFLLADLKDFHTLLPLLEEHG----------KPRVIVTDPPRAGMHPKALATMVQLQ 425

Query: 316 P-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           P  I+Y+SCNP SL RD   L +  +++  +   + FP T H+E     V+
Sbjct: 426 PERIIYVSCNPASLARDGKELAAQGYSLRSVQPVEMFPQTNHIESVGCFVK 476


>gi|253681845|ref|ZP_04862642.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           botulinum D str. 1873]
 gi|253561557|gb|EES91009.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           botulinum D str. 1873]
          Length = 450

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 148/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIW--HDG 55
             +     YE+QL  K D++ ++     +   +        E   YR + EF       G
Sbjct: 79  GCSHQFLSYEKQLEIKKDQVLKLFENAGISGFEFLGIQGSPEEFEYRNKMEFTFGDMEKG 138

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMAT-----------IRLEPLLRAK 103
            +L   M  Q      +  D         N ++  ++             +  E  LR  
Sbjct: 139 GELTLGMHAQGKSFGIISADECKIVDSDFNLILKTVLEYFRGKELPHYRIMSHEGYLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    +VT          + E          L+  LH     +  + +A+ 
Sbjct: 199 VIRKGRNTQEIMVNLVTTSQREFDLSEFVELLKGLNYKGELKGILHTVNDSLSDVVQADS 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            ++   RDY+ E +      L ++    SF Q N      +   V       +  ++ +L
Sbjct: 259 MEVLFGRDYIMEEVL----GLKFKISPFSFFQTNTKGAEALYSIVRDFMGDAKSKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    + A + ++V+ +E+ + + +AA  N   N +NN + +     +  + ++  
Sbjct: 315 YCGTGTIGQIAAHNAEKVIGIELIEEAAKAANENAKLNCLNNCEFLAGDVAKVIKDIK-- 372

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 373 -------------VKPDIIILDPPRPGVHPDALKYVTKFNANDIIYVSCNPKTLVEDLKF 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +E++ + D FP+T H+E  V L +
Sbjct: 420 LIKEGYKVEKVKVKDMFPHTPHVESVVKLSK 450


>gi|218130910|ref|ZP_03459714.1| hypothetical protein BACEGG_02505 [Bacteroides eggerthii DSM 20697]
 gi|317476221|ref|ZP_07935472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii
           1_2_48FAA]
 gi|217987254|gb|EEC53585.1| hypothetical protein BACEGG_02505 [Bacteroides eggerthii DSM 20697]
 gi|316907632|gb|EFV29335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii
           1_2_48FAA]
          Length = 475

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 143/399 (35%), Gaps = 57/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55
            Y +Q+  K  ++   +              +   +   YR + E+   +          
Sbjct: 91  PYSEQIRYKQKQVTDNLTRIGKIELPEILPILGSEKTEFYRNKLEYTFSNKRWLTTEEVR 150

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
            + +Y  M            + + I+       + N +   +             LR + 
Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDFAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR---DALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V LI     D+        L+   D        + +I    N 
Sbjct: 211 GMLRNMIVRTSSTGELMVILICKIEKDEEMALFNQLLQYVADTFPEITSLLYIINNKCND 270

Query: 158 TKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T   L       +D++ E +      L ++    SF Q N+    + L  V     G+ G
Sbjct: 271 TITDLDVHTFKGKDHIFEEM----EGLRFKIGPKSFYQTNSEQAYN-LYKVARNFAGLTG 325

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  +++   +V+ +E    ++E A+ N   N + N        K+ 
Sbjct: 326 NELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNSEINGIQNTLFFAGDMKDM 385

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                        +D      R   I  DPPR+G+    + ++       I+Y+SCNP +
Sbjct: 386 LT-----------QDFINEYGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPAT 434

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             RDL +L   + ++ +   D FP+T H+E  VLL  K 
Sbjct: 435 QARDLQLLDAKYKVKAVQPVDMFPHTHHVENVVLLELKN 473


>gi|168028766|ref|XP_001766898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681877|gb|EDQ68300.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 492

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 144/426 (33%), Gaps = 89/426 (20%)

Query: 10  YEQQLAEKVDRLRQM---MLAFQV----PNLQIFRSE------PIHYRMRAEFHIWHDGD 56
           YE QL EK  ++  +   +  F           +         P  YR + EF       
Sbjct: 81  YEAQLREKEQQVHDLIARLGKFGNSPLSGEPGSYMMPIVPCATPYAYRNKMEFSYGTKKW 140

Query: 57  DLYHIM----------------FDQQTK------ERMRIDYFMPGSLLINALMIEMMA-- 92
               +                 F           + M I   +    + N ++  +    
Sbjct: 141 KSKGLFVSPKLEDVNESGPKLEFALGLHAPGRFDKIMPIHNCLLQHDVSNQVLKLVQDHG 200

Query: 93  TIRLEPL----LRAKLFQIDYLTSQSD--------QAIVTLIYHRLLDDAWRECAIRLRD 140
              LE L    +R     + +LT +S         Q +V  +      D  +    ++  
Sbjct: 201 ERHLEELPPYDVRTHEGFLKHLTIRSGRDCETGQLQLMVNFVTKGDKKDLLQPLVDQITT 260

Query: 141 ALHARKYQIQLIGRA-------NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
           +       +  +  A       +K  +   + Y+ ERL    R L++    NSF Q N  
Sbjct: 261 SFPQVVSIVNNVNSAVGPSSIVDKEHVLYGKAYITERL----RGLVFEISANSFFQTNTS 316

Query: 194 INVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
               + + V      ++GD    LL+L+CG G   L +A+    V   E+ + +V  AR 
Sbjct: 317 QAEVLYQKV-EEQCALKGDGSEVLLDLFCGTGTIGLSMAKRVKHVYGYELVQEAVVDARR 375

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N A N + N   ++    + T    ++              R   +  DP R G+    +
Sbjct: 376 NAARNGIQNATFIQGDLNKLTDEFGKDF------------PRPDVVITDPNRPGMHIKLI 423

Query: 310 GMVQA--YPHILYISCNPDSLCRDLSILSTT----------HTIERLALFDQFPYTRHME 357
             +       I+YISCNP +  RDL +L  T          + +  +   D FP T H+E
Sbjct: 424 KYLLQLRARRIVYISCNPATCARDLDLLCHTGDEGVESPTRYRLVHVQPVDMFPQTPHIE 483

Query: 358 CGVLLV 363
           C   L 
Sbjct: 484 CITTLE 489


>gi|225442369|ref|XP_002276511.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297743126|emb|CBI35993.3| unnamed protein product [Vitis vinifera]
          Length = 570

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 144/425 (33%), Gaps = 78/425 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50
                   YE Q+  K  +++++++         P                HYR + EF 
Sbjct: 163 GCKTQNLSYEAQVRAKEQQVQELVIHVGKFSDKDPEFSSIMKPIVPCDVQFHYRNKMEFS 222

Query: 51  IWHDGDDLYHIMFDQQT---------------KERMRIDYFMPGSLLINALMIEMMATIR 95
                     ++ +++                 + + ++  +  S   N ++  +    R
Sbjct: 223 FATQKWLPRELLHEKEDGASGYALGLHAPGFFDKVLNVNKCLLQSEPANTVLAAIQECWR 282

Query: 96  L-------------EPLLRAKLFQI--DYLTSQSDQAI--VTLIYHRLLDDAWRECAIRL 138
                         +  L+  + +   D  T   +  +  VT  Y   L     E    +
Sbjct: 283 DPQFGLSPYNVHSHDGFLKHLVLRTGRDIKTGLPELMVNFVTSSYKPELLKPLVEKISAI 342

Query: 139 RD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
            +    ++     +       +  I   +  + E L    R L ++   NSF Q N    
Sbjct: 343 PEVVSIVNNINTSVGSTSVGEQEYILHGKSAITEIL----RGLTFQISANSFFQTNTHQA 398

Query: 196 VHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +L  ++    G++GD    +L+L+CG G   L L+R    V   E+   +V  AR N 
Sbjct: 399 E-VLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLSRRVRHVYGYEVVAQAVSDARRNA 457

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATV 309
             N + N   +     +  +   ++              +   +  DP R G+       
Sbjct: 458 KLNGICNATFIEGDLNKIGENFGKDF------------PKPDVVISDPNRPGMHMKLIKF 505

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360
            +    P I+Y+SCNP +  RDL  L            + ++ L   D FP+T H+EC  
Sbjct: 506 LLKLKAPRIVYVSCNPATCARDLDYLCHGVVEQNIEGCYKLKSLQPVDMFPHTPHIECVC 565

Query: 361 LLVRK 365
           LL  +
Sbjct: 566 LLELR 570


>gi|226494722|ref|NP_001143116.1| hypothetical protein LOC100275594 [Zea mays]
 gi|224031061|gb|ACN34606.1| unknown [Zea mays]
          Length = 558

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 146/430 (33%), Gaps = 93/430 (21%)

Query: 10  YEQQLAEKVDRLRQM---MLAFQVPNLQIFRSEP-------------IHYRMRAEFHIWH 53
           Y  Q+  K  ++R +      F    L+   SEP               YR + EF    
Sbjct: 148 YAAQIRHKHHQVRDLLVNFGKFDPKRLE--SSEPDDILKPTVQCDEIFRYRNKMEFSFGT 205

Query: 54  D-------GDDLYHIMFDQQTKE----------------RMRIDYFMPGSLLINALMIEM 90
                    D    +   Q+T E                 + +      S   + ++  +
Sbjct: 206 KRWVQKELKDKGEEVEVKQETNETDGYALGLHAPGFFDKVLHVQKCFLQSEPADKVLAVV 265

Query: 91  MATIRLEPL-------------LRAKLFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAI 136
             T     +             L+  + +    +++ + + +V  +      D       
Sbjct: 266 QETWMDPAIGLTPYDVHKHVGFLKHLMIRTGRNISTGTPEVMVNFVTSCYKPDVLMPLVD 325

Query: 137 RLRDA------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           ++         ++     +       +      +  + E L    R L ++   NSF Q 
Sbjct: 326 KITKIPEVVSVINNVNSSVGNSSVGEQEYTLYGKPNITEML----RGLAFQISANSFFQT 381

Query: 191 NAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           N      +L  ++  + G++GD    +L+L+CG G   L  AR    +   E+   ++E 
Sbjct: 382 NTKQAD-VLYKLIEDSAGLKGDGSEIVLDLFCGTGTIGLTFARRAKHIYGYEVVPEAIED 440

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR N   N +NN   V+    +  ++  +E              +   I  DP R G+  
Sbjct: 441 ARKNAKLNGINNATFVQGDLNKINESFGKEF------------PKPDIIISDPNRPGMHM 488

Query: 307 ATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRH 355
             +  +     P I+Y+SCNP +  RDL  L            + ++ +   D FP+T H
Sbjct: 489 KLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLRGFYELKSVIPVDMFPHTPH 548

Query: 356 MECGVLLVRK 365
           +EC  LL  +
Sbjct: 549 IECVCLLELR 558


>gi|304382443|ref|ZP_07364941.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM
           16973]
 gi|304336396|gb|EFM02634.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM
           16973]
          Length = 473

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 79/405 (19%), Positives = 143/405 (35%), Gaps = 57/405 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56
                   YE+QL  K  ++   +       L  FR          YR + EF   +   
Sbjct: 84  GCKWQHLPYEEQLKAKQQQVYDQLTRIGKLELPAFRPIMGSVHTQAYRNKLEFGCSNRRW 143

Query: 57  DLYHIMFDQQT---------------KERMRIDYFMPGSLLINALMIEMMA-------TI 94
              H +   +T                + + I+  +    L N +   +         + 
Sbjct: 144 LTPHQISSGETFDNMNAIGFHITGAFDKILPIEKCLLMDDLHNEIRNAIRDFAIDAHLSF 203

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  I    S + + +V + +H   +      A+ L + L  R  QI  +  
Sbjct: 204 YDLRAQHGLLRDIMIRNSNTGEWMVLVQFHYD-ETGDEAKALALMEHLARRFPQITSLLY 262

Query: 155 ANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
            +  K           +   +D++ E +      L ++    SF Q N     H+   V 
Sbjct: 263 VDNQKGNDTFGDLQLQLYKGKDHIYETM----EDLRFKVGPKSFYQTNTAQAYHLYSVVR 318

Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              +    +L+ +LY G G  +  +AR+  RV+ +E    ++E A+ N   N ++N    
Sbjct: 319 DLARLTGSELVYDLYTGTGTIANFVARNAGRVIGIEYVPEAIEDAKVNSQINGIDNTLFY 378

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320
               K               +       R   +  DPPR+G+    V  +       I+Y
Sbjct: 379 AGDMKNILT-----------ETFIAEHSRPDVVITDPPRAGMHPDVVQTILNTLPQRIVY 427

Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +SCNP +  RDL+++   + +  +   D FP+T H+E  VLL  +
Sbjct: 428 VSCNPATQARDLALMDVRYKVTVVQPVDMFPHTPHVENVVLLELR 472


>gi|326794412|ref|YP_004312232.1| RNA methyltransferase, TrmA family [Marinomonas mediterranea MMB-1]
 gi|326545176|gb|ADZ90396.1| RNA methyltransferase, TrmA family [Marinomonas mediterranea MMB-1]
          Length = 435

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 156/370 (42%), Gaps = 33/370 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
                   Y  Q+  K + L        + ++++       YR RA   ++  G +    
Sbjct: 93  GCQFQHLIYPDQVEAKTEWLSGQFRKLAIGDIELLSDHSEAYRRRARLSVFTKGGEHQIG 152

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI--- 118
              + +K+ + I   +  +  + ++ + +   +  E  L +++  ++ L  +S  +I   
Sbjct: 153 FRARSSKDIVNIANCLVLTESLQSVFVALKERLH-ESSLTSRIGHVELLEDESGSSITIR 211

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           ++       +  W   A  +   L+ ++     I  A K        YVD         L
Sbjct: 212 LSREISATDESDWMVWASEVGVNLYWQRADESRISTARKH-----YYYVD--------GL 258

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
             +     F Q NA +N  M+E  +      + D +L+L+CG+GNFSL LAR    VL V
Sbjct: 259 NIQFHPQDFIQVNASMNEKMVEQAMRWLAPTKEDIVLDLFCGSGNFSLPLARRAGEVLGV 318

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E  +  VE AR N   N ++NV+ +     +    +             + S +   + +
Sbjct: 319 EGLETMVEFARLNAQENDLDNVQFIAADLTKPAPKV-------------LKSKKVTKVLL 365

Query: 298 DPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           DPPRSG  +    +V+  P  ILY+SCN  +L RD   L +  + + R++L + FP T H
Sbjct: 366 DPPRSGAFEFLETLVKFKPEQILYVSCNASTLARDAEYLIANGYVVSRVSLMEMFPQTAH 425

Query: 356 MECGVLLVRK 365
            E  +LL RK
Sbjct: 426 AEAMMLLQRK 435


>gi|158338369|ref|YP_001519546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acaryochloris marina
           MBIC11017]
 gi|158308610|gb|ABW30227.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acaryochloris marina
           MBIC11017]
          Length = 478

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 156/388 (40%), Gaps = 44/388 (11%)

Query: 9   QYEQQLAEKVDRLRQMML---AFQVPNLQ--IFRSEPIHYRMRAEFHI--WHDGDDLYHI 61
            Y  QL  K + + Q +     FQ P ++  +    PI YR +  + I    + + +   
Sbjct: 106 DYAYQLVAKQNHVIQALERIGKFQSPVVEPVLAAPSPIEYRNKVTYPIVLSPNTNRVQAG 165

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRAKLFQIDYL 110
            + + + + + ++         N+ + E+   I+ +            L+R    +I   
Sbjct: 166 YYRKGSHKLINLNQCPVQDPHFNSFLAEIKEDIQKQDWPIYNEQNHRGLIRHLSIRIGRR 225

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRD--- 165
           T +    ++             +   ++++ L  + R   I L    ++T      D   
Sbjct: 226 TGEILMTLIINAKPNQSLSELVDLDAQVQEWLERYPRLVGISLNFNPHRTNRIFGHDSTC 285

Query: 166 -YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
                 L      L ++   ++F Q +      +L  +    + +  + +++LYCG G  
Sbjct: 286 IAGHHYLQETFAGLTFQLRHDTFFQVHTEQAEVLLNTLFDHLQLMGSEQVVDLYCGIGTL 345

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L LA+    ++ +E+   +V+ A+ N   N ++NV     ++K    A  RE  F    
Sbjct: 346 TLPLAQRVKEIIGIELQAAAVDQAQTNATLNQISNVTFAAGTAK----ACLRELPF---- 397

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT--H 339
                      + +DPPR G   + +  + A     I+Y+SC+  +L RDL++L  +  +
Sbjct: 398 -------VPDLVLLDPPRKGCHQSVIEQLLALKPAQIVYVSCHSATLARDLNLLCQSGQY 450

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367
            + R+   D FP T H+EC   L R+ S
Sbjct: 451 DLTRVQPVDFFPQTSHVECVAFLNRRAS 478


>gi|325679292|ref|ZP_08158877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
 gi|324108889|gb|EGC03120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
          Length = 454

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 72/392 (18%), Positives = 138/392 (35%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH-------YRMRAEFHIWHD 54
             +     YE++   K + +R+        + +     P         YR +A++ +   
Sbjct: 82  GCSFRHIIYEEECRIKDNFIRESFERIGKLSPEYL---PFSGCKDIDLYRNKAQYPVAET 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL-----------INALMIEMMATIRLEPLLRAK 103
                   + +++   +          +           +N   I     +RL  LLR  
Sbjct: 139 EGKAVCGFYAKRSHRVVEFTRCRLQPKIFSDIVDKIISYVNTRHIPAYDEVRLSGLLRHI 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRL-----LDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
             +    + +    +V     +      L  A  +    ++  L     +   +    K 
Sbjct: 199 YLRRGANSGEIMVCLVVTSIKKAGVFDDLVPALLDSFSDIKTVLLNENPRNTNVILGEKM 258

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELY 217
           K       + + +     +        SF Q N      +       A       LL+LY
Sbjct: 259 KYLYGDGSIKDTMCGNTVS----ISPLSFYQVNTHQAELLYAMAAELAGLSENMTLLDLY 314

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L +AR   +++ VEI +P+++ A  N  AN + N + +   + +  + +    
Sbjct: 315 CGTGTIGLSMARQVKKLIGVEIIQPAIDNAVVNAKANGIENAEFICGDAGKIAKLLYERG 374

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
           E            R   I  DP R G D  ++  +       I+ ISCN  +  RD +IL
Sbjct: 375 E------------RPDVIIADPARRGCDGESLEYMAKMSPDRIVMISCNHTTAARDCAIL 422

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
               ++ +++  FD FP T H+EC VL+ ++ 
Sbjct: 423 GELGYSCDKVMGFDLFPRTTHVECVVLMSKEK 454


>gi|315652265|ref|ZP_07905257.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
 gi|315485388|gb|EFU75778.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium saburreum DSM
           3986]
          Length = 475

 Score =  236 bits (602), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 89/417 (21%), Positives = 145/417 (34%), Gaps = 76/417 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIH-YRMRAEFHIW--HDG 55
             T     YE QL  K  +++++M +    +     I  S     YR + EF        
Sbjct: 80  GCTYQTISYENQLKLKDTQIKELMKSATDNDFLWEGIIPSPKYQAYRNKMEFSFGDEKKD 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL---------------EPLL 100
            +L   M  + +   + ++ F  G  ++++   +++                       L
Sbjct: 140 GELALGMHKKGSHYDI-VNVF--GCKIVDSDFTKLLELTLNFFKERNIAYFHKNTHTGFL 196

Query: 101 RAKLFQIDYLTSQSDQAIVT------------LIYHRLLDDAWRECAIRLRD-------- 140
           R  L +    T +    +VT            L    +L DA         D        
Sbjct: 197 RHLLVRRSEYTGEILVLLVTTSSFGFVEDPNVLREASILGDAEIALIREWADYIKVECNK 256

Query: 141 ---------ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
                     LH +            T +    DY+ ERL      L ++    SF Q N
Sbjct: 257 GILNGSIGGILHTKNDSYADAVLNQGTTLLYGNDYITERL----NRLDFKITPFSFFQTN 312

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +     +           +G  + +LY G G  + +LA   ++V  VEI + +VEAA  N
Sbjct: 313 SKGAEVLYTVAGKYLGDTEGKSVFDLYSGTGTIAQLLAPKSEKVYGVEIVEEAVEAAIEN 372

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N +NN + +                   LK +D   +    I +DPPR G+    + 
Sbjct: 373 AKKNGLNNCEFIAGDV---------------LKVVDTLGFNPDIIVLDPPRDGIHPKALP 417

Query: 311 MVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            +       I+YISC P S  RDL I+    + +E+    D FP T + E   LL R
Sbjct: 418 KILDFGADKIVYISCKPTSFVRDLKIMEAAGYKMEKCVGVDMFPNTVNCEAVALLSR 474


>gi|300361238|ref|ZP_07057415.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri
           JV-V03]
 gi|300353857|gb|EFJ69728.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus gasseri
           JV-V03]
          Length = 459

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 135/387 (34%), Gaps = 40/387 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y +QL  K   + + +  +   +         I      HYR +A++ I  +   
Sbjct: 88  LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTISAPNAWHYRNKAQYQIEFNKGK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               ++   ++  + +      +            LI+ L I +    R    ++  + +
Sbjct: 148 SKLGLYAPNSRRLIDLPEMPTQTKETQKTEREIKKLIDKLHIRIADFRRHNDGIKTIVVR 207

Query: 107 IDYLTSQSDQAIVTL---IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             + + +    ++T+   I    L  +       +                 NKT     
Sbjct: 208 QSHASGEIQVTLITIGKKIRDLKLLASQIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           + ++ E +        ++    +F Q N      +    L          L++ Y G G 
Sbjct: 268 KSHIIEEILGK----KFKLSPRAFFQLNPEQTSTLYSEALKYLDLTPDQTLIDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++             L
Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEYIQGNVEKL------------L 371

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL    +  +        +Y+SCNP +L +DL +LS  + 
Sbjct: 372 PELKNQGVPIDALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSEAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +   D  P T   E    LV + +
Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRKN 458


>gi|116747738|ref|YP_844425.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116696802|gb|ABK15990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Syntrophobacter
           fumaroxidans MPOB]
          Length = 488

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/406 (21%), Positives = 155/406 (38%), Gaps = 55/406 (13%)

Query: 2   SGTLLID-QYEQQLAEKVDRLR---QMMLAFQVPNLQ--IFRSEPIHYRMRAEF----HI 51
            G    D  YE+QL  K  ++    + +   Q   ++  +     IHYR + EF      
Sbjct: 95  GGCQWQDIAYEEQLKWKRVQVADSLEHLAGAQGVKIEAAVPSDRLIHYRNKMEFTFSDRR 154

Query: 52  WHDGDD-LYHIMFDQQT-----------KERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
           W   ++     M D  T            +   ++  +  S     ++ E     R   +
Sbjct: 155 WLTPEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVEDCLLESAEAVEIVKETRDWCRGSGV 214

Query: 100 L-----------RAKLFQIDYLTSQSDQAIVTL---IYHRLLDDAWRECAIR---LRDAL 142
                       R  + +    T Q+   +VT     +   ++   R    R   +   +
Sbjct: 215 PAYGIKSQRGFWRFLVIREGKRTGQTLLHLVTSDQPEHEAAVNTLTRHLVSRFPHITTVV 274

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
           H+   +   +   +++++      ++ERL      L +R    SF Q N      + + V
Sbjct: 275 HSVSRKKAQVAFGDQSRVVAGPGVIEERLG----GLRFRISAESFFQTNPFSAEKLYDEV 330

Query: 203 LA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
              A       + +LYCG G+ +L +A    RV+  E+   ++E A  N   N + N + 
Sbjct: 331 SRLAAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGIENARF 390

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHIL 319
           +    KE           N  +      +    +  DPPR+G+    VG +       I+
Sbjct: 391 ISGDLKE---------RINHARGPGSGEHHPDIVITDPPRAGMHPQVVGALLEMGPGRII 441

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           Y+SCNP +L RDL+  +  + I  +  FD FP+T H+EC V + RK
Sbjct: 442 YVSCNPATLARDLAFFTERYEIGTVRPFDLFPHTPHIECVVRMDRK 487


>gi|193216964|ref|YP_002000206.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma
           arthritidis 158L3-1]
 gi|193002287|gb|ACF07502.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma
           arthritidis 158L3-1]
          Length = 449

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 146/375 (38%), Gaps = 29/375 (7%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L+I  YE QLA K   +  + L    F+           I+YR +   H+   G      
Sbjct: 86  LMILSYEDQLAFKQKIVNDLFLRELNFRNVKEITPSPLEINYRNKLRVHVECQGTTFKMG 145

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-------QS 114
            + + +   +    +      I  ++ E+    + E LL     + + +TS       ++
Sbjct: 146 FYVKNSHILVEQTSYDLAYKEIGNILEEIDFLCKKEVLLEDNFIKKNKITSITVKYSEKT 205

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-LDRDYVDERLTV 173
            ++ V     +           RL +        +Q++    KTKI  L      E +  
Sbjct: 206 GESQVIFESLKQ-APFPASFIKRLIEKFDNLN-IVQIVCNEEKTKILKLIVLAGKESIEY 263

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               L +     SF Q N      M + +L +      + +++ + G G   + LA+   
Sbjct: 264 KIDKLKFNVSSQSFYQVNEKQTNKMYKTLLKSLNLTGSEFIVDAFAGVGTIGMYLAKKAK 323

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V+ VEI+K +    + N   N +NN++ +      F       R+              
Sbjct: 324 QVVCVEISKKATLNGKENAKLNSLNNLEFISEDCNRFFDKECTRRQ------------NI 371

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             I  DPPR GL+  T+  +  ++   I YISCNP +L RDL +  S  + IE +  FD 
Sbjct: 372 DVIVFDPPREGLNKTTINAIIPKSLKRIAYISCNPRTLVRDLKLFTSKGYKIEFVQPFDM 431

Query: 350 FPYTRHMECGVLLVR 364
           FP T H+E   LL +
Sbjct: 432 FPQTYHVETLALLSK 446


>gi|260063140|ref|YP_003196220.1| RNA methyltransferase, TrmA family protein [Robiginitalea biformata
           HTCC2501]
 gi|88784709|gb|EAR15879.1| RNA methyltransferase, TrmA family protein [Robiginitalea biformata
           HTCC2501]
          Length = 509

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 137/398 (34%), Gaps = 46/398 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEP--IHYRMRAEFHI----W 52
                   Y  QL  K D + Q +       +P++      P   +YR + EF      W
Sbjct: 121 GCKWQHMDYAAQLRFKQDEVVQNLVRIGKLDLPDIAPILPAPETYYYRNKMEFSFSDNRW 180

Query: 53  HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
            +  ++                     + + +      +   NA+ + +        L  
Sbjct: 181 LEPGEIASGEPVASRNALGLHIPGMWDKILDLQECHLQADPSNAIRLAVREYAESHGLAF 240

Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  +    + S Q +V LI     D + RE  +        +   +     
Sbjct: 241 FDTRKQEGLLRSLMLRNTASGQVMV-LIQFYQDDASAREGLLDFLLDRFPQITSLFYTIN 299

Query: 155 ANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209
                   D D    +    +T     L +R    SF Q N+     + + V   A    
Sbjct: 300 RKGNDTLYDLDLICYHGTPYITEEMEGLAFRITPKSFYQTNSRQAYALYKKVRELAGLTG 359

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  +AR    V+ +E    ++EAAR N A N ++N +      KE 
Sbjct: 360 KERVYDLYTGLGTIAQFVARQAREVIGIEAVADAIEAARVNAAENGISNTRFFAGDMKEL 419

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS 327
             +           +      R   +  DPPR G+    V  +       I+Y+SCN  +
Sbjct: 420 FTS-----------EFLETHGRPDVVITDPPRDGMHKYVVAQLLEILPERIVYVSCNSAT 468

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL+++   + +  +   D FP T H+E  VLL R+
Sbjct: 469 QARDLALMRDAYRVAHVQPVDMFPQTHHVENIVLLERR 506


>gi|300727266|ref|ZP_07060682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii
           B14]
 gi|299775504|gb|EFI72098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii
           B14]
          Length = 484

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 83/408 (20%), Positives = 150/408 (36%), Gaps = 70/408 (17%)

Query: 9   QYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPI--HYRMRAEFHI----WH------ 53
            YE+Q+  K  +++  +      ++P             YR + EF      W+      
Sbjct: 96  PYEEQIKAKQKQVQDQLTRIGKIELPEFHPIMGSQKIKEYRNKLEFGCANKRWYTKEEIA 155

Query: 54  --------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
                         +G   +HI       +   I+       L N +  E+        +
Sbjct: 156 ALPPKQEGETGSLTEGAIGFHITGAFD--KIYPINKCWLMDNLNNEIRNEIGQYATSHDI 213

Query: 100 -------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
                      L  I +  S + + +V + +H   ++   E A+ L   +     QI  +
Sbjct: 214 SYYNIREQHGLLRDIMFRNSNTGEWMVLIQFHYD-EEGDHEKALGLLQHIADSFPQITSL 272

Query: 153 GRANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
              N  K           +   +DY+ E +      L ++    SF Q N     H+ E 
Sbjct: 273 LYVNNQKGNDTFGDLDIEVFKGKDYIYETM----EDLKFKVGPKSFYQTNTDQAYHLYE- 327

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V      + G+  + +LY G G  +  +A H  +V+ +E    ++E A+ N   N ++N 
Sbjct: 328 VARNFAELNGEELVYDLYTGTGTIANFVAHHSKKVIGIEYVPEAIEDAKVNSEINGIDNT 387

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317
                  K+               D      R   I  DPPR+G+    + ++   A   
Sbjct: 388 LFYAGDMKDILTD-----------DFIKQHGRPDVIITDPPRAGMHPDVIQVILNAAPKR 436

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           I+Y+SCNP +  RDL++L   + + ++   D FP+T H+E  V L R+
Sbjct: 437 IVYVSCNPATQARDLALLDCDYKVMQVQPVDMFPHTPHVENVVQLYRR 484


>gi|169346803|ref|ZP_02865754.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens C str. JGS1495]
 gi|169297085|gb|EDS79207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens C str. JGS1495]
          Length = 451

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 150/395 (37%), Gaps = 53/395 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHD--- 54
             +     YE+QL  KV++++ +    +VP  +     + P    YR + E+    +   
Sbjct: 79  GCSSQTIPYEKQLELKVEQVKDLFKEAEVPTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103
           G+    +    ++   + +D  +        I    ++            +     LR  
Sbjct: 139 GELTIGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154
           + +      ++++ +V L+    +D    E            +L+  +H     +     
Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTELIKGLNLKGKLKSIIHTESDALSEAVI 255

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
             K  I    D++ E L      L ++    SF Q N+     +   V          ++
Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + +
Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
           +                +   I +DPPRSG+    +  V  +  P I+Y+SCNP +L  D
Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L +L    + IE+  L D FP T H+E  V L RK
Sbjct: 417 LKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNRK 451


>gi|298385356|ref|ZP_06994914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           1_1_14]
 gi|298261497|gb|EFI04363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
           1_1_14]
          Length = 472

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +  ++   YR + EF              
Sbjct: 91  PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTNDEVR 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHGYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 211 GMLRNMIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFIADSFPEITSLLYIINNKCN 269

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  +     G+ 
Sbjct: 270 DTINDLDVHVFKGKDHMFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIAREFAGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G   + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 325 GKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAKINEIKNALFYAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         ++      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 385 MLT-----------QEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 434 TQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVLLELR 472


>gi|228469545|ref|ZP_04054538.1| 23S rRNA-methyltransferase RumA [Porphyromonas uenonis 60-3]
 gi|228308895|gb|EEK17570.1| 23S rRNA-methyltransferase RumA [Porphyromonas uenonis 60-3]
          Length = 493

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 84/408 (20%), Positives = 142/408 (34%), Gaps = 61/408 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG-------- 55
            Y++QL  K  +    M       ++     +   +P HYR + EF              
Sbjct: 91  PYDEQLRGKSQQAADAMTRIGHIAIEHTEPIVGCEDPWHYRNKVEFTFSKKRWLTEEELK 150

Query: 56  --------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107
                    +L  + F +       +D       + + +  E+   +    L R + +  
Sbjct: 151 SLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASEIRDYLNDYCLARWEEYPY 210

Query: 108 DYLTSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
               +        LI    L          +   E  ++L +AL  R  QI  +     T
Sbjct: 211 YDQRAHEGVMRTLLIRTTTLGGLMVLIAFAEGTEELRVQLLEALRERFPQITSLYYMVNT 270

Query: 159 K-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           K           +     Y++E +      L YR    SF Q N+     + E V    +
Sbjct: 271 KFNDSLADLPAQLYSGAPYIEENMH----GLRYRIGPKSFYQTNSRQAERLYEKVREYAQ 326

Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               +++ +LY G G  +  LA+    V+ +E    +VE A  N   N + N        
Sbjct: 327 LKGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNGITNATFYAGDM 386

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324
           K                D      R   +  DPPR+G+D   V ++   A   I+Y+SCN
Sbjct: 387 KAILTD-----------DFVAAHGRPDVLVTDPPRAGMDAPVVEVILRAAPQRIVYVSCN 435

Query: 325 PDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           P +  RDL++L     +   +    D FP+T H+E   LL +  +  H
Sbjct: 436 PATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALLSKLNTEHH 483


>gi|169351042|ref|ZP_02867980.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552]
 gi|169292104|gb|EDS74237.1| hypothetical protein CLOSPI_01820 [Clostridium spiroforme DSM 1552]
          Length = 379

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 146/388 (37%), Gaps = 48/388 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
           S   +   Y +QL  K +  + ++    +   ++        P  YR +    I      
Sbjct: 11  SCKYINIDYNKQLEIKTNYCKDLLKNNNLNMYKVEKIKGMQYPYEYRNKI---IVAFNQK 67

Query: 58  LYHIMFDQQTKERMRIDYFM---PGSLLI--------NALMIEMMATIRLEPLLRAKLFQ 106
                +++ +   +  +  +     S LI            + +    R   LLR  L +
Sbjct: 68  YEFGFYEENSHRIIPYNRCLLHEEVSDLIIKKIQSLLKRYQVSIYDEKRQRGLLRHVLIR 127

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTK 159
              +    DQ ++ L+ +  +    +     L  +  + K  +  + +        N+ K
Sbjct: 128 RAIV---KDQTMIVLVCNDNVFKGSKNFCNELVKSFPSIKTVVLNVNKRKTSIVLGNEEK 184

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           +   + ++ + L      L ++    SF Q N      +    +   +    + +++ YC
Sbjct: 185 VLYGKGFIVDELC----GLTFKISPKSFYQINHEQCQALYNKAIDLLELKGDEIVIDAYC 240

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   +V A+    V+ VE+ + +++ A  N   N + N++ V   +  F   + + ++
Sbjct: 241 GIGTIGMVAAKKAKEVIGVELNQDAIKDANNNARMNKIGNIRFVNDDASNFMAVLAKTKQ 300

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                       R   + +DPPRSG     +  ++      ++YISC+P +  RD+   S
Sbjct: 301 ------------RVDCVIMDPPRSGSTKEFMDAIKILNPKKVVYISCDPTTQIRDIKYFS 348

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLV 363
              +    L  FD FP+T H E  VLL 
Sbjct: 349 KLGYRGNVLYPFDMFPHTIHTETIVLLS 376


>gi|331004223|ref|ZP_08327702.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
 gi|330411496|gb|EGG90907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
           taxon 107 str. F0167]
          Length = 490

 Score =  236 bits (601), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 87/417 (20%), Positives = 147/417 (35%), Gaps = 76/417 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPI-HYRMRAEFHIW--HDG 55
             T     YE QL  K ++LR ++      +     +  S     YR + EF        
Sbjct: 95  GCTYQTLSYENQLKLKDNQLRVLIEGATDKDFVWEGVIPSPKYLAYRNKMEFSFGDERKD 154

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL---------------EPLL 100
            +L   M  + +   + ++ F  G  ++++   +++                       L
Sbjct: 155 GELALGMHKKGSHYDI-VNVF--GCKIVDSDFTKILELTLNFFSKRKVSYFHKNTHTGFL 211

Query: 101 RAKLFQIDYLTSQSDQAIVTL-------------------IYHRLLDDAWRECAIR---- 137
           R  L +    + +   ++VT                    +   +L   W +        
Sbjct: 212 RHLLIRRSEYSGEILVSLVTTSSFGFVEDPNTLLEPSVLGVDEEILIKEWADYIKEETDR 271

Query: 138 ------LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
                 +   LH +            T +   RDY+ ERL      L ++    SF Q N
Sbjct: 272 GILNGSIGGILHTKNDSYADAVLNQGTTLLHGRDYIIERL----NRLDFKITPFSFFQTN 327

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +     +            G  + +LY G G  + +LA   ++V  VEI + +VEAA  N
Sbjct: 328 SKGAEVLYNVAGKYLGDTAGKSVFDLYSGTGTIAQLLASESEKVYGVEIVEEAVEAAIEN 387

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N +NN + +                   LK +D   +    I +DPPR G+    + 
Sbjct: 388 AKNNGLNNCEFIAGDV---------------LKVVDTLGFSPDIIILDPPRDGIHPKALP 432

Query: 311 MVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            +       I+YISC P S  RDL ++    + +E+    D FP T + EC VLL R
Sbjct: 433 KILEFGAKRIVYISCKPTSFVRDLKVMEAAGYRMEKCVGVDMFPNTVNCECVVLLSR 489


>gi|118444301|ref|YP_878485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
 gi|118134757|gb|ABK61801.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
          Length = 450

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 77/391 (19%), Positives = 146/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIW--HDG 55
             +     YE+QL  K +++ ++     +   +        E  +YR + EF       G
Sbjct: 79  GCSHQFLSYEKQLEIKKEQVLKLFENANISGFEFLGIQGSPEEFYYRNKMEFTFGDMEKG 138

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAK 103
            +L   M  Q      +  D         N ++  ++   R            E  LR  
Sbjct: 139 GELTLGMHAQGKSFGIISADVCKIVDSDFNLILKTVLEYFRAQGLPHYRIMSHEGYLRNL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    +VT          + E          L   LH     +  + +A+ 
Sbjct: 199 VIRKGKNTKEIMVNLVTTSQKDFDLTEFTEMLKGLNYEGELTGILHTINDSLSDVVQADS 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            ++   RDY+ E +      L ++    SF Q N      +   V       +  ++ +L
Sbjct: 259 MEVLFGRDYIMEEVL----GLKFKISPFSFFQTNTKGAEALYSIVRGFMGDAKSKVVFDL 314

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G    + A + ++V+ +E+ + + +AA  N   N + N + +     +  + ++  
Sbjct: 315 YCGTGTIGQIAAHNAEKVIGIELIEEAAKAANENAKLNGLTNCEFLAGDVAKVIKDIK-- 372

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                         +   I +DPPR G+    +  V  +    I+Y+SCNP +L  DL  
Sbjct: 373 -------------VKPDIIILDPPRPGVHPDALKYVTKFNAKDIIYVSCNPKTLVEDLKF 419

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    +  E++ + D FP+T H+E  V L +
Sbjct: 420 LIKEGYKAEKVKVKDMFPHTPHVETVVRLTK 450


>gi|34540828|ref|NP_905307.1| RNA methyltransferase [Porphyromonas gingivalis W83]
 gi|50401491|sp|Q7MVG9|Y1095_PORGI RecName: Full=Uncharacterized RNA methyltransferase PG_1095
 gi|34397142|gb|AAQ66206.1| RNA methyltransferase, TrmA family [Porphyromonas gingivalis W83]
          Length = 465

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 150/408 (36%), Gaps = 61/408 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWH--- 53
                   YE QL  K  ++   ++      ++     +   +  +YR + EF   +   
Sbjct: 71  GCKWQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNKLEFTFSNKRW 130

Query: 54  ---------DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEP 98
                    DGD    + +           + + I     G+ + + + + +      +P
Sbjct: 131 LLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRLFIREYCMQDP 190

Query: 99  LL---------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
                         +  +   T+ + + +V +++ R    A       + +        +
Sbjct: 191 ERYPFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAREALLAAVAERFPQITSLL 250

Query: 150 QLIGRA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
            +I           ++ L   R+Y++E +      L ++    SF Q N+    + L  +
Sbjct: 251 YVINTKCNDTIGDQEVLLYHGREYIEEEM----EGLKFKIGAKSFYQTNSRQA-YQLYRI 305

Query: 203 LAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                G+ GD  + +LY G G  +  +A    RV+ +E    ++E AR N   N + N  
Sbjct: 306 AREFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTL 365

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318
                 K+               D      R   +  DPPR+G+ ++ +  +   A   I
Sbjct: 366 FYAGDMKDILT-----------NDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRI 414

Query: 319 LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +Y+SCNP +  RDL++L     +   +    D FP+T H+E  VLLVR
Sbjct: 415 VYVSCNPATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVR 462


>gi|293373836|ref|ZP_06620180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
           CMC 3f]
 gi|292631235|gb|EFF49869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
           CMC 3f]
          Length = 462

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 143/398 (35%), Gaps = 57/398 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +   +   YR + EF              
Sbjct: 81  PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSDKTEFYRNKLEFTFSNKRWLTNEEVR 140

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 141 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDNISNHIRNAVRDYAYEHDYSFINLRTQE 200

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR---DALHARKYQIQLIGRA-NK 157
             L  +   TS + + +V +I     D   +     L+   D+       + +I    N 
Sbjct: 201 GMLRNMIIRTSSTGELMVIVICKITEDHEMKLFKQLLQFVADSFPEITSLLYIINNKCND 260

Query: 158 T------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           T       +   +D++ E +      L ++    SF Q N+    + L  +      + G
Sbjct: 261 TINDLDVHVFKGKDHIFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIARNFAELTG 315

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+ 
Sbjct: 316 NELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYAGDMKDM 375

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
                        +D      R   I  DPPR+G+    + ++       I+Y+SCNP +
Sbjct: 376 LT-----------QDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPAT 424

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL +L+  + ++ +   D FP+T H+E  VLL  +
Sbjct: 425 QARDLQLLNEKYKVKAVQPVDMFPHTHHVENVVLLKLR 462


>gi|307244550|ref|ZP_07526655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492077|gb|EFM64125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
           stomatis DSM 17678]
          Length = 455

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 149/393 (37%), Gaps = 50/393 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHI---WHD 54
             ++L   YE+QL  K +++ ++     + +              YR + EF     + D
Sbjct: 79  GCSILSIPYEKQLEIKRNQILELFDKAGIKDYDFLGIQGSPSQYAYRNKMEFTFGDEYKD 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI-----------EMMATIRLEPLLRAK 103
           G     +    +  + + +D           +M+               T   +  LR  
Sbjct: 139 GPLSLGMHKVGRFIDIVTVDDCRIIDEDFRKIMVGTRDYFEEKGLPYYRTFNHQGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    IVT        + +++  +      +L   LH     +    + ++
Sbjct: 199 VVRRGENTGEIMVNIVTSSQVDYRMEDYKDFLLGLDLENQLVGILHTINDGLADAVQCDE 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LL 214
            +I   RDY  E +      L ++    SF Q N      +L  +     G +GD   + 
Sbjct: 259 LRILHGRDYFYEEVL----GLRFKISPFSFFQTNTKGAE-VLYTIAREFAGDKGDGKVVF 313

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G    ++A+   +V  +E+ + +V AA +N   N ++N + +     +   ++ 
Sbjct: 314 DLYSGTGTIGQLMAKTAKKVYGIELVEEAVVAANHNAGLNKLDNCEFIAGDVAKLVTSL- 372

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332
                           +   I VDPPR+G+    V  +       I+Y+SCNP SL  ++
Sbjct: 373 --------------PEKADLIIVDPPRAGILGNGVKDIAEFGAGEIVYVSCNPKSLVENV 418

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
               S  + +++L L D FP   H E   LLVR
Sbjct: 419 VEFESRGYKLDKLKLMDMFPSGPHCESVALLVR 451


>gi|306820250|ref|ZP_07453891.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551704|gb|EFM39654.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 148/392 (37%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSE-PIHYRMRAEFHIWHDGDD 57
             ++L   Y+ QL+ K ++L ++        ++   I  S     Y+ + EF   ++  D
Sbjct: 79  GCSMLSVDYDNQLSLKSEQLTKLFHKNGHTEVEKIDIVPSPLQKEYKNKMEFTFGNEVKD 138

Query: 58  LYHIMFDQQTK---ERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAK 103
              ++   +       + ++  +                  A  +        E  LR  
Sbjct: 139 GELLIGLHKKNSPMGIVSVEDCLLVDEDYRTILKMTGEYFRAKNLPHYHIKSHEGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRANK 157
           + +    T Q    IVT          + +    L+        LH     +    + +K
Sbjct: 199 VIRKGENTKQLLINIVTTSQIDFDLSEYVQKLQALKLESTIVGILHTTNDSLSDTVKDDK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             +    +Y  + L        ++    SF Q N      + +  +    G +  + +LY
Sbjct: 259 VDVLFGDNYFYDILLGN----KFKISPFSFFQTNTKGAETLYKTAMEMIDGEKDIIFDLY 314

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G   + L+    +V+ +EI + +VE AR N  AN+V NV+ +    KE         
Sbjct: 315 SGTGTIGISLSARAKKVIGIEIVEEAVEMARENAQANNVKNVEFIAGDVKE--------- 365

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                 ++   +   + I +DPPR+G++   +  +  +    ILYISCNP  L +DL +L
Sbjct: 366 ------EVSKLTNSPQLIILDPPRAGINPKALKDIIGFNSKQILYISCNPKMLVQDLKVL 419

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
               + I ++   D F  T H E  VL+ RK 
Sbjct: 420 KEAGYEIAKVKGVDMFANTYHCETVVLMSRKD 451


>gi|313886024|ref|ZP_07819762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924554|gb|EFR35325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 493

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 142/408 (34%), Gaps = 61/408 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG-------- 55
            YE+QL  K  +    M       ++     +   +P HYR + EF              
Sbjct: 91  PYEEQLRGKAQQAADAMTRIGHIAIEHTEPIVGCEDPWHYRNKVEFTFSKKRWLTEEELK 150

Query: 56  --------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107
                    +L  + F +       +D       + + +  E+   +    L R + +  
Sbjct: 151 SLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASEIRDYLNDYCLARWEEYPY 210

Query: 108 DYLTSQSDQAIVTLIYHRLLD---------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
               +        LI    L          +   E  I+L +AL  R  QI  +     T
Sbjct: 211 YDQRAHEGVMRTLLIRTTTLGGLMVLIAFAEGTEELRIQLLEALRMRFPQITSLYYMVNT 270

Query: 159 K-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           K           +     Y++E +      L YR    SF Q N+     + E V    +
Sbjct: 271 KFNDSLADLPAQLYSGAPYIEEDMH----GLRYRIGPKSFYQTNSRQAERLYEKVREYAQ 326

Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               +++ +LY G G  +  LA+    V+ +E    +VE A  N   N + N        
Sbjct: 327 LTGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNGITNATFYAGDM 386

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324
           K                D      R   +  DPPR+G+D   V ++   A   I+Y+SCN
Sbjct: 387 KAILTD-----------DFVAAHGRPDVLVTDPPRAGMDTPVVDVILRAAPQRIVYVSCN 435

Query: 325 PDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           P +  RDL++L     +   R    D FP+T H+E   LL +  +  H
Sbjct: 436 PATQARDLALLMAEGQYRAVRACAVDMFPHTHHVETVALLSKLNTEHH 483


>gi|29346053|ref|NP_809556.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
 gi|50401554|sp|Q8AA22|Y643_BACTN RecName: Full=Uncharacterized RNA methyltransferase BT_0643
 gi|29337947|gb|AAO75750.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 454

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +  ++   YR + EF              
Sbjct: 73  PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTNDEVR 132

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 133 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 192

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 193 GMLRNLIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFIADSFPEITSLLYIINNKCN 251

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  +     G+ 
Sbjct: 252 DTINDLDVHVFKGKDHMFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIAREFAGLT 306

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G   + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 307 GKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINEIKNALFYAGDMKD 366

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         ++      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 367 MLT-----------QEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 415

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 416 TQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVLLELR 454


>gi|294674202|ref|YP_003574818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola
           23]
 gi|294473371|gb|ADE82760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola
           23]
          Length = 483

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 79/409 (19%), Positives = 142/409 (34%), Gaps = 68/409 (16%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDG---DDLYH 60
            YE+QL  K  ++   +       L  F           YR + +F   +      +   
Sbjct: 91  PYEEQLKFKQQQVYDQLHRIGKIELPEFMPILGSVHTQEYRNKLDFGCANKRYLTKEQIQ 150

Query: 61  IMFDQQTK-----------------ERMRIDYFMPGSLLINALMIEMMATIRLEPL---- 99
            + + +++                 + + I+       L N +  E         L    
Sbjct: 151 TLPNDESQSLKDVPAIGFHITGAFDKILPIEKCWLMDNLQNEIRNEAREYAMANGLSFFD 210

Query: 100 LRA---KLFQIDYLTSQSDQAIVTLIYHR---------LLDDAWRECAIRLRDALHARKY 147
           LRA    L  I    S S + +V   +H            ++  +     + D       
Sbjct: 211 LRAQVGLLRDIIIRNSASGEWMVIFQFHYDRTSAEALAQSEEQAKGLLQHIADKFPQITS 270

Query: 148 QIQLIGRA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            + L  +         +I +    D++ E +      L ++    SF Q N     H+  
Sbjct: 271 LMYLDNQKCNDTIGDQEILVFKGIDHIYELM----EDLKFKVGPKSFYQTNTEQAYHLYS 326

Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            V     G+ G+  + +LY G G  +  +A+   +V+ +E    ++E A+ N   N + N
Sbjct: 327 -VARNFAGLTGNELVYDLYTGTGTIANFVAKKARKVIGIEYVPEAIEDAKINSEVNKIGN 385

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYP 316
                   K+              ++          I  DPPR+G+    V  +   A  
Sbjct: 386 TLFYAGDMKDILT-----------EEFIAEHGHPDVIITDPPRAGMHPDVVKTILGAAPK 434

Query: 317 HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            I+Y+SCNP +  RDL  L   + +  +   D FP+T H+E  VLL R+
Sbjct: 435 RIVYVSCNPATQARDLHDLDVDYRVAAVQPVDMFPHTPHVENVVLLERR 483


>gi|115435048|ref|NP_001042282.1| Os01g0193600 [Oryza sativa Japonica Group]
 gi|9988445|dbj|BAB12711.1| putative RNA methyltransferase [Oryza sativa Japonica Group]
 gi|10934074|dbj|BAB16852.1| putative RNA methyltransferase [Oryza sativa Japonica Group]
 gi|113531813|dbj|BAF04196.1| Os01g0193600 [Oryza sativa Japonica Group]
 gi|215697095|dbj|BAG91089.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 557

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 150/434 (34%), Gaps = 89/434 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--------------IHYRMRA 47
                   Y  Q+  K  ++R++++ F   + +   S                  YR + 
Sbjct: 139 GCKAQSLAYAAQIRHKHLQVRELLVNFGKFDPRKMESSEPDAILKPIVPCDEIFRYRNKM 198

Query: 48  EFHI---------WHDGDDLYHIM--------FDQQTK------ERMRIDYFMPGSLLIN 84
           EF           W +  D   +         +           + + ++  +  S   +
Sbjct: 199 EFSFGTKRWMQREWKEEKDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVEKCLLQSEPAD 258

Query: 85  ALMIEMMATIRLEPL-------------LRAKLFQID-YLTSQSDQAIV---TLIYHRLL 127
            ++  +  T     L             L+  + +    +T+ + + +V   T  Y   L
Sbjct: 259 KVLAIVQETWLDPALGLTPYDVHKHVGFLKHLMIRTGRNITTGAPEVMVNFVTSCYKPEL 318

Query: 128 DDAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
            +       ++ +    ++     +       +      +  + E L    R L ++   
Sbjct: 319 LEPLVNNITKIPEVVSIMNNVNTSVGNTSVGEEEYTLYGKPTITEML----RGLTFQISA 374

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIA 240
           NSF Q N      +L  ++  + G++GD    +L+L+CG G   L LAR    V   E+ 
Sbjct: 375 NSFFQTNTKQAD-VLYKLIGESAGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVV 433

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ N   N ++N   V+    +  +   +E              +   I  DP 
Sbjct: 434 PEAIADAKKNAKLNGISNATFVQGDLNKINETFGKEF------------PKPDIIISDPN 481

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQ 349
           R G+    +  +     P I+Y+SCNP +  RDL  L            + ++ +   D 
Sbjct: 482 RPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLKGCYELKTVIPVDM 541

Query: 350 FPYTRHMECGVLLV 363
           FP+T H+EC  +L 
Sbjct: 542 FPHTPHIECICVLE 555


>gi|152984405|ref|YP_001349925.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas aeruginosa
           PA7]
 gi|150959563|gb|ABR81588.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas aeruginosa
           PA7]
          Length = 452

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 139/374 (37%), Gaps = 36/374 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             TL    + +QLA K   L++ +  F     +            YR RA   +  +   
Sbjct: 101 GCTLQHLGHAEQLALKQRTLQEQLQRFAGMEPEEWAPPLVGPEFGYRRRARIAVRWEPKS 160

Query: 58  LY--HIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                      ++E +  D  +   P    I   +  ++        +          ++
Sbjct: 161 RRLEVGFRASSSQEIVAFDECLVLVPALQTIAQALPALLQGFCKPEAIGHVELFHGTASA 220

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
              +  V L           E   RL D     + Q+ L G A++ +       +   L 
Sbjct: 221 LLLRHTVALAV---------EDRRRLEDFCAEHQAQLWLQG-ADEPRPVEPAAELGYALD 270

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
               TL YR     F Q NA +N  M+   L     G +  +L+L+CG GNFSL LAR  
Sbjct: 271 DWKLTLAYR--PGDFVQVNAPVNRLMVRQALEWLAPGAEERVLDLFCGLGNFSLPLARQV 328

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V+ VE     V  A  N  AN ++N    +    +             L +    +  
Sbjct: 329 AQVVGVEGVAAMVGRASANALANGLDNAHFFQADLSKA------------LAEAPWAAQG 376

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
           F  + +DPPR G  +A  GM       ++Y+SCNP +L RD   ++   + ++R  + D 
Sbjct: 377 FTAVLLDPPRDGALEAVRGMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDM 436

Query: 350 FPYTRHMECGVLLV 363
           FP T H+E   L  
Sbjct: 437 FPQTAHVEAMALFE 450


>gi|300173743|ref|YP_003772909.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888122|emb|CBL92090.1| RNA m5u methyltransferase family [Leuconostoc gasicomitatum LMG
           18811]
          Length = 458

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 141/386 (36%), Gaps = 45/386 (11%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           L+  +Y+ QL  K  +++++     +       I    P +YR +    +      L   
Sbjct: 90  LVNLKYDAQLELKQSQIKKLFQEKNIAVAVEPTIGMENPTYYRNKTIVPVKWQEGHLTSG 149

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYL 110
            + + + E + +  +      I+  +I++   +             +  +R  + +  Y 
Sbjct: 150 FYRRGSHELVPMTDYFVNDQAIDQAIIKVRQVLENYNITAFDPDFEKGTIRYIMIRRGYY 209

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLD 163
              S + +V L+ +    +  +E    +   L   K  +                +    
Sbjct: 210 ---SHELMVVLVSNESALNFEKEIVKDIVAQLPEIKSLLFNFSPKKDFVLLSPNNRTLWG 266

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
            D + + L        +    NSF Q N      + +           D +++ Y G G 
Sbjct: 267 EDAIHDILL----GYDFIIGPNSFYQVNPQTTEVLYDLAAKKAALKPTDLVIDAYSGIGT 322

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             + +A    +V+ VE+   +V  A+ N+ AN++NN   +   + +     + ER     
Sbjct: 323 IGITIANQVRQVIGVEVIPGAVADAQINVRANNINNADYILADAPKQFAKWQSER----- 377

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL-SILSTTH 339
                   R   +FVDPPR GL    +           +YISCNP +L RD   I+   +
Sbjct: 378 -------LRPNVVFVDPPRRGLTRELIQATTEMGPDKFVYISCNPVTLVRDAVEIIRNGY 430

Query: 340 TIER-LALFDQFPYTRHMECGVLLVR 364
            I+  +   DQFP T H+E   +  +
Sbjct: 431 HIDGPIVPVDQFPQTSHIESITIFKK 456


>gi|291543770|emb|CBL16879.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. 18P13]
          Length = 451

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 124/388 (31%), Gaps = 39/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
                   Y+ +   K   +    +     +           PI YR +A++ +      
Sbjct: 80  GCAFRHMTYQAECNVKQQVVEDAFVRIGGLHPVFLPILGCDTPIGYRNKAQYPVGMQNGQ 139

Query: 58  LYHIMFDQQTKERMRIDYFM-----------PGSLLINALMIEMMATIRLEPLLRAKLFQ 106
                + +++   +   +                  I    ++     R   LLR    +
Sbjct: 140 AVCGFYAKRSHRIVPYTHCALQPPLFGEILEAALEHIRQQGLQPYDEQRGTGLLRHLYLR 199

Query: 107 IDYLTSQSDQAIVTLIYHR----LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
             Y + +     V     R     L    +    +L             +    +T+  L
Sbjct: 200 QGYHSGEVMLCFVVTRPAREQLMPLSQQLQHRFPQLTSICMNVNPARTNVILGKRTETLL 259

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            +  + + +      +      ++F Q N      +       A    +  LL+LYCG G
Sbjct: 260 GQAAIRDTMC----GIRVELSPHAFYQVNTAQAERLYGIAREFAQLDGRQSLLDLYCGTG 315

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L +A     +  VE+   +VE A  N   N + N                       
Sbjct: 316 TIGLSMADGVKHLTGVEVIPQAVENAIRNARENRIENADFHVGD------------AAQW 363

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338
            + +         I +DPPR G D  T+  V   A   I+ ISCNP +  RD ++L    
Sbjct: 364 AQQLAQRGEHPDVIVLDPPRKGCDAQTLEAVCRMAPQRIVMISCNPATAARDCALLDKMG 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKP 366
           +  +++   D FP T H+EC VL+ RK 
Sbjct: 424 YHAQKVQAVDLFPRTGHVECVVLMSRKK 451


>gi|253568537|ref|ZP_04845948.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842610|gb|EES70690.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 472

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 59/399 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +  ++   YR + EF              
Sbjct: 91  PYSEQIRYKQKQVEDNLRRIGKIELPEISPILGSAKTEFYRNKLEFTFSNKRWLTNDEVR 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 151 QDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA-----------LHARKYQIQ 150
             L  +   TS + + +V +I  ++ +D   E   +L              L+    +  
Sbjct: 211 GMLRNMIIRTSSTGELMVIVIC-KITEDHEMELFKQLLQFIADSFPEITSLLYIINNKCN 269

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                    +   +D++ E +      L ++    SF Q N+    + L  +     G+ 
Sbjct: 270 DTINDLDVHVFKGKDHMFEEM----EGLRFKVGPKSFYQTNSEQAYN-LYKIAREFAGLT 324

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G   + +LY G G  +  ++R   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 325 GKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINEIKNALFYAGDMKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         ++      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 385 MLT-----------QEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 433

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +L   + ++ +   D FP+T H+E  VLL  +
Sbjct: 434 TQARDLQLLDGKYKVKAVQPVDMFPHTHHVENVVLLELR 472


>gi|152995281|ref|YP_001340116.1| RNA methyltransferase [Marinomonas sp. MWYL1]
 gi|150836205|gb|ABR70181.1| RNA methyltransferase, TrmA family [Marinomonas sp. MWYL1]
          Length = 440

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 155/363 (42%), Gaps = 32/363 (8%)

Query: 11  EQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           EQQL+ K D L+  +        L+     P  YR RA   I      +      + +KE
Sbjct: 103 EQQLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRARLAIDIKKGRMVLGFRGKASKE 162

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            + ID  +  +  + +  + +   +     L   L  ++ L      + +  +   + D+
Sbjct: 163 IISIDQCVVLTPNLQSTFLLLKLKLLEND-LAGVLGHVELLEDTKGVSALFRLTSPISDE 221

Query: 130 ---AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
              AW + A + R AL+ +  ++       K ++ L     ++        L  +     
Sbjct: 222 LKNAWEDWAEKGRVALYWQAPKV------GKAEVAL-----EKMRYYDLGDLRLKYHPQD 270

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q NA +N  M+   +      + D+ L+L+CG GNFSL LA H   V+ VE+ +  VE
Sbjct: 271 FIQVNAAMNQKMVVQAMDWLNPSKQDVILDLFCGVGNFSLPLAVHAQAVIGVEVQETMVE 330

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           AAR N   N  +N+  V     +           N L    I       + +DPPR+G  
Sbjct: 331 AARENARVNGFDNLSFVAADLTK--------PVNNELFKQTI-----TKVLLDPPRAGAF 377

Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           +    +++  P  ILY+SCN  +L RD   L +  + + R++L D FP T H+E  +LL 
Sbjct: 378 EFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLMDMFPQTSHVETMMLLQ 437

Query: 364 RKP 366
           +K 
Sbjct: 438 KKK 440


>gi|189466070|ref|ZP_03014855.1| hypothetical protein BACINT_02440 [Bacteroides intestinalis DSM
           17393]
 gi|189434334|gb|EDV03319.1| hypothetical protein BACINT_02440 [Bacteroides intestinalis DSM
           17393]
          Length = 476

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 140/400 (35%), Gaps = 58/400 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH------------- 50
            Y +Q+  K  ++   +              +   +   YR + E+              
Sbjct: 91  PYSEQIKYKQKQVTDNLTRIGKIELPEISPILGSEKTQFYRNKLEYTFSNKRWLTEEEVK 150

Query: 51  --IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
             + +D  +           + + I+       + N +   +             LR + 
Sbjct: 151 QNVVYDQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAVRDYAYEHDYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL----RDALHARKYQIQLIGRANK 157
             L  +   TS + + +V L+     ++   +   +L     D        + +I     
Sbjct: 211 GMLRNMIIRTSTTGELMVILVAKIEEEERELQLFKQLLQYVADTFPEITSLLYIINNKRN 270

Query: 158 TKICL-------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
             I          +D++ E +      L ++    SF Q N+    + L  +     G+ 
Sbjct: 271 DTITDLDVHTFKGKDHIFEEM----EGLRFKIGPKSFYQTNSEQAYN-LYKIARNFAGLT 325

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G   + +LY G G  +  +++   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 326 GKELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFAGDMKD 385

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 386 MLT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 434

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +  RDL +L   + ++ +   D FP+T H+E  VLL  + 
Sbjct: 435 TQARDLQLLDVKYKVKAVQPVDMFPHTHHVENVVLLELRN 474


>gi|150024827|ref|YP_001295653.1| RNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
 gi|149771368|emb|CAL42837.1| Probable RNA methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
          Length = 471

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 131/403 (32%), Gaps = 54/403 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWH--- 53
                  +Y QQL  K + +   +       +  F       +   YR + EF   +   
Sbjct: 85  GCKWQNMKYSQQLFYKQNEVFNNLKRIGKVEMPEFETILGSEKQFFYRNKMEFGFSNARW 144

Query: 54  ------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------R 95
                       D  +       +   + + I          NA+  E+           
Sbjct: 145 MTEAEIKSDQEFDDRNALGFHIPKMWDKILDITKCHLQGDPSNAIRNEIRRFAIENNLEF 204

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
             P     L +   + + S   I+ LI     +   RE  +            +Q +   
Sbjct: 205 FNPRNHEGLLRTLMIRTASTGEIMVLIQFFEENKVQRELIMNHLAETFPEITSLQYVING 264

Query: 156 NKTKICL--------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
                           RDY+ E +      L +     SF Q N+      L  +     
Sbjct: 265 KPNDTIYDQDIKLFKGRDYILEEM----EGLHFSINAKSFYQTNSEQAYE-LYKITRDFA 319

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G+  + +LY G G  +  +++   +V+ VE    ++  A+ N   N+++N +     
Sbjct: 320 GLTGNELVYDLYTGTGTIAQFVSKQAKKVIGVEAVPEAIADAKENAKRNNISNCEFFVGD 379

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
            K                           I  DPPR G+    V  +       ++Y+SC
Sbjct: 380 MKNVFND-----------AFIAQHGHPDVIITDPPRDGMHADVVKQILSIGAEKVVYVSC 428

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           N  +  RDL+++   + + R+   D FP T H+E  VLL ++ 
Sbjct: 429 NSATQARDLALMDEMYQVTRVRPVDMFPQTHHVENVVLLEKRK 471


>gi|167772924|ref|ZP_02444977.1| hypothetical protein ANACOL_04312 [Anaerotruncus colihominis DSM
           17241]
 gi|167664857|gb|EDS08987.1| hypothetical protein ANACOL_04312 [Anaerotruncus colihominis DSM
           17241]
          Length = 472

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 141/390 (36%), Gaps = 41/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPI--HYRMRAEFHIWHDGDD 57
                   YE +L  K   ++Q +       L  +     P+   YR +A++ +      
Sbjct: 99  GCVFRHISYEAELRCKQAFVQQNLRRIGKLELAAEPIEPSPVTDGYRNKAQYPVRMQKGG 158

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQ 106
           L    F  +T E +          +   L+  +++ +               L+R    +
Sbjct: 159 LCAGFFAPRTHEVIDCHTCKLQPPVFGELLEAVLSYMHTYHVSAYDESLGAGLIRHVYLR 218

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC----AIRLRDALHARKYQIQLIGRANKTKICL 162
             + + Q    +V    H   ++A  +        +   L     +   +     +++  
Sbjct: 219 RGHRSGQIMVCLVVNGTHLPNENALVDLLLSRCGEIVSILLNVNERNTNVIIGEHSRVLY 278

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGN 220
            +  + + L      + +     SF Q N+     +L  V A    + G   LL+LYCG 
Sbjct: 279 GKPAISDVLC----GVRFELSAQSFYQVNSPGAE-LLYGVAAEFAALTGTETLLDLYCGA 333

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L LA    +V+ VE+   +VE A  N A N + N +     + +    + RE    
Sbjct: 334 GTIGLSLAHLCRQVIGVEVVPQAVENAVANAARNGIKNARFFCADAGQAAARLARE---- 389

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILST 337
                     R   I +DPPR G     +  V A     ++ +SC+  ++ RD  ++ + 
Sbjct: 390 --------GVRPDVIVLDPPRKGCAPEVLDAVAAMAPRRVVMVSCDSATMARDCAALAAA 441

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            ++  R    D FP T H+E   +L R  S
Sbjct: 442 GYSPRRCRPVDMFPRTAHVEAVAVLSRLKS 471


>gi|158319773|ref|YP_001512280.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
 gi|158139972|gb|ABW18284.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs]
          Length = 450

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 146/390 (37%), Gaps = 46/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEPI--HYRMRAEFHIW---HDG 55
             T     YE +LA K  ++R +     +  N     + P    YR + E+        G
Sbjct: 79  GCTYQTLSYENELALKEKQIRSLFEKEGLHVNFLGIEASPSIKAYRNKMEYTFGDEERGG 138

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL---LIN--------ALMIEMMATIRLEPLLRAKL 104
                +    +  E +             LI            +      + + +LR  +
Sbjct: 139 PLSLGLHMKNRFYESVNTWDCNIVDEDFTLIRESIRDYFEQKKVPFYNKRQHKGVLRHLV 198

Query: 105 FQIDYLTSQSDQAIVTL----IYHRLLDDAWRECAI--RLRDALHARKYQIQLIGRANKT 158
            +    +S+    +VT     I+H  L D      +  R+   LH     +    +A++ 
Sbjct: 199 IRKAVSSSEILVNLVTTSQSPIHHEALKDMILSLNLSGRIAGILHTINDGLGDTVKADQM 258

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
           ++   RDY+ E L      L ++    SF Q N+     +          I    + +LY
Sbjct: 259 ELLYGRDYIVEELL----GLKFKISPFSFFQTNSLGAEKLYTIAREFAGDIDDKIVFDLY 314

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G  + ++A    +V+ +EI + +VE A+ N   N ++NV+ +     E    ++   
Sbjct: 315 SGTGTIAQIMAPVAKKVIGIEIVEEAVEMAKENAKMNGLDNVEFIAGDVLEAVNDLKE-- 372

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                        +   I +DPPR G+    +  +  +     +Y+SCNP +L RDL + 
Sbjct: 373 -------------KPDLIVIDPPRDGIHPKAIHKIIDFNPDTFVYVSCNPVTLVRDLKVF 419

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364
               + +E++ L D F  T H+E    L +
Sbjct: 420 MERGYRVEKVKLMDMFARTNHVETVCKLEK 449


>gi|160915760|ref|ZP_02077968.1| hypothetical protein EUBDOL_01775 [Eubacterium dolichum DSM 3991]
 gi|158432236|gb|EDP10525.1| hypothetical protein EUBDOL_01775 [Eubacterium dolichum DSM 3991]
          Length = 451

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 147/388 (37%), Gaps = 40/388 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIF-RSEPIHYRMRAEFHIWHDGDDL 58
           S  L+  +   Q   K +++ ++       +P   +     P HYR +         D  
Sbjct: 80  SCQLMHRKQSNQAQYKKEQVVELCKKQRLSIPVEDVLCAGNPYHYRNKMIIGFQKGRDKR 139

Query: 59  Y-HIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
                +++ +   +  +  +               LI  L IE+    R   LLR  L +
Sbjct: 140 IKAGFYEEFSHRIIPYEACLLHPKECDDIVQSIVSLIQKLAIEIYDEDRRTGLLRHVLIR 199

Query: 107 IDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              +T Q     V         R L +   +    +   +     +   I   N+ +I  
Sbjct: 200 YGKVTKQIMVVFVVSSNVFPARRKLVEELLKAHPNITTIVQNVNPRKTSIVLGNEERILY 259

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNG 221
            + Y+++ L      L ++    SF Q N      +    L        ++ L+ YCG G
Sbjct: 260 GKGYIEDILC----GLRFKISCKSFYQINHDQCEVLYTKALDKLMLTGNEVVLDAYCGIG 315

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              + +A    +V+ VE+ K +V+ A  N   N + N++ +   +  F   + + ++   
Sbjct: 316 TIGMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAGSFMSQLAKAQQ--- 372

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338
                        + +DPPRSG     +        P ILYISCNP++  RD+ +L    
Sbjct: 373 ---------TLDVLIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIRDIRMLQKLG 423

Query: 339 HTIE-RLALFDQFPYTRHMECGVLLVRK 365
           + +E  + L D FP+T  +E   +LVRK
Sbjct: 424 YRVEGSMTLVDMFPFTNSIESVCMLVRK 451


>gi|312129534|ref|YP_003996874.1| 23S rRNA m(5)u-1939 methyltransferase [Leadbetterella byssophila
           DSM 17132]
 gi|311906080|gb|ADQ16521.1| 23S rRNA m(5)U-1939 methyltransferase [Leadbetterella byssophila
           DSM 17132]
          Length = 467

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 144/397 (36%), Gaps = 45/397 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHD-- 54
             T     YE QLA+K  ++   +           +  +   +  +YR + EF   +   
Sbjct: 82  GCTWQHVPYETQLAQKERQVYDQLSRIGKVTLRNTSPILGSKKTQYYRNKLEFTFSNSRW 141

Query: 55  ------------GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP---- 98
                         D       ++  + + I +        NA+        +       
Sbjct: 142 FTEKEVASEAELDRDALGFHVPRRFDKVLPIHHCYLQGGPSNAVRDFFREEAKASGKPFY 201

Query: 99  ---LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
              + +     +   T+ + + +V + +     DA +    +           +  +   
Sbjct: 202 DHIVHKGFFRTLMIRTTSTGELMVLVQFAENDQDAIKSILDKFLLKFPDV-TSLSYVINT 260

Query: 156 NKTKICLDRDYVDER----LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
                  D + V       +T     L +R    SF Q N+     + + V    +  + 
Sbjct: 261 KGNDTIYDLEPVYYHGLPYITEEMEGLKFRIGVKSFYQTNSEQAYELYKKVREYAQIQEN 320

Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           DL+ +LY G G  +  LA+    V+ VE  +P+VE AR N   N + N         +  
Sbjct: 321 DLVYDLYTGTGTIANFLAKGAKHVVGVEYIEPAVEDARINSQINGITNTTFFAGDMAKVL 380

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328
                       ++    + R   +  DPPR+G+D +   ++   A   I+Y+SCNP + 
Sbjct: 381 N-----------EEFVAQNGRPDVVITDPPRAGMDKSVCEVLLKVAPRRIVYVSCNPGTQ 429

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL ILS  + +E +A  D FP+T H+E  V L+ K
Sbjct: 430 ARDLEILSEKYEVEAVAPVDMFPHTFHVENIVSLILK 466


>gi|294141950|ref|YP_003557928.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea
           DSS12]
 gi|293328419|dbj|BAJ03150.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Shewanella violacea
           DSS12]
          Length = 453

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 161/384 (41%), Gaps = 39/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDD 57
              L     ++Q   K D L  +M        +        +   YR RA    ++D   
Sbjct: 91  GCDLQHLSIDKQRNHKQDALVGLMAKLGQAEAETLAPALIGKEWDYRRRARLATFYDRKT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +       + +K+ ++I++    +  ++ L++ +   +      +A L  ++ + + + 
Sbjct: 151 KHTTLGFRAKASKQVVKIEHCPVLAAPLSDLILPLSQVLNRLASKKA-LGHVELIEASNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +V  +   + D    +   +LR+   A  +++ LI + N++ + L  D   + L +  
Sbjct: 210 HFVVIRMTQSMAD----KDTEKLREF--ALSHKVSLIVQGNESDLTLIGDEA-KTLVIGS 262

Query: 176 RTLIY---------RQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSL 225
             L Y              +F Q NA IN  M+   +   +      +L+L+CG GNFSL
Sbjct: 263 NELPYYELDNGIKLSFTPGNFVQVNAEINNAMVNQAVDWLSVEPHERVLDLFCGVGNFSL 322

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA+    V+ VE     V+ A+ N   + ++NV        + +  + +E    ++   
Sbjct: 323 PLAKKGASVIGVEGVPEMVQQAKLNATLSQLDNVSFFH---TDLSADLSKESWLGKV--- 376

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIER 343
                    + +DP R+G  ++   + +  P  I+Y+SC+P +L RD   +L   + + +
Sbjct: 377 -------DKLLLDPARAGAFESLQWLKKMKPKSIVYVSCDPATLARDSEPLLKHGYKLTK 429

Query: 344 LALFDQFPYTRHMECGVLLVRKPS 367
           LAL D FP T H+E   L   K S
Sbjct: 430 LALIDMFPQTHHIEAMALFELKGS 453


>gi|315023445|gb|EFT36453.1| RNA methyltransferase [Riemerella anatipestifer RA-YM]
 gi|325335993|gb|ADZ12267.1| SAM-dependent methyltransferase, tRNA
           (uracil-5-)-methyltransferase-like protein [Riemerella
           anatipestifer RA-GD]
          Length = 469

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 131/389 (33%), Gaps = 44/389 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHI----WHDGDDLY 59
            YE+QL  K   +   +              +   +   YR + EF      W   +++ 
Sbjct: 91  SYEKQLEFKQSEVLNNLKRIGGLTDFEALPILGSPQEYFYRNKMEFSFSNARWLTSEEIL 150

Query: 60  HIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LR 101
           +                   + + +          N + + +        L         
Sbjct: 151 NGADIDNKNALGFHIPGMWSKILDLKECFLQETPSNEIRLAVKNYADANQLEFFDVKNQE 210

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             L  +    +   + +V   +++   +        L +A    K  +  I       I 
Sbjct: 211 GFLRTLMLRQNSKGEWMVLFQFYKEQKEDREALFEYLLNAFPQIKTLVYAINPKPNDSIY 270

Query: 162 ---LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELY 217
              ++  Y D  L      L ++    SF Q N    + + +  L        +++ +LY
Sbjct: 271 DLEVETYYGDGFLIEQMEDLQFKIGPKSFFQTNYQQALALYQKTLEFADLKGDEVVYDLY 330

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G  +  +AR   +V+ +E    ++ AA+ +   N ++N        K+         
Sbjct: 331 TGTGTIAQFVARKAKQVIGIESVPEAIAAAKEHAKHNGLDNCTFYCGDMKDIFTD----- 385

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                 +      +   +  DPPR G+    V  +   A   I+Y+SCN  +  RDL+++
Sbjct: 386 ------EFLAQHPKADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSCNSATQARDLALM 439

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
              + +E++   D FP T H+E   LL +
Sbjct: 440 KEHYRVEKILPVDMFPQTHHIENIALLKK 468


>gi|326624695|gb|EGE31040.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 437

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 106 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 162

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 163 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 220

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 221 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 272

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 273 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 332

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 333 AIRNGLHNVTFFHENLEE------------EVTKQPWAKNGFDKVLLDPARAGATGVMRH 380

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 381 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 436


>gi|83644637|ref|YP_433072.1| 23S rRNA 5-methyluridine methyltransferase [Hahella chejuensis KCTC
           2396]
 gi|123534038|sp|Q2SL27|RUMA_HAHCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|83632680|gb|ABC28647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Hahella chejuensis
           KCTC 2396]
          Length = 446

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 143/364 (39%), Gaps = 26/364 (7%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWH--DGDDLYHIMFDQQ 66
           Q+  K   L   +  F     +            YR +A   + +    D++     ++ 
Sbjct: 96  QINHKESVLLDHLRHFGDLKPEQVVPPLVGAGRGYRTKARLGVRYVAKRDEVLVGFRERY 155

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           +     ID        +   + E+ A +R L    R  + QI+        A+V     R
Sbjct: 156 SNFLTAIDECPILIESVGGRIPELKALVRSLSGYQR--IPQIEVAAGDDMCALVI----R 209

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT--LIYRQI 183
            +D    E   +L          I L  +   T   L      E L+   R   L  +  
Sbjct: 210 HMDPLTEEDLQKLIAFSEQTGLAIYLQPKGPDTVAKLWPKDGQELLSYQLRDYGLTMQFH 269

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              FTQ N  IN  ML   L   +   G+ +L+L+CG GNF+L +AR    V+ VE ++ 
Sbjct: 270 PMDFTQVNRDINRRMLAQALEWLQPQAGETILDLFCGLGNFTLPIARSAAHVVGVEGSED 329

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V     N   N ++NV+           A  +E +   L+        +  + +DPPRS
Sbjct: 330 MVRRGYANAELNGISNVEFHAADL-HLPLAPAKEAKHAWLR-------TYDKVLLDPPRS 381

Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGV 360
           G ++    M +     I+Y+SCNP +L RD  IL+   + + +  + D FP+T H+E   
Sbjct: 382 GAEELAKQMTRFGAKRIVYVSCNPATLARDAGILATQGYKLIKAGVMDMFPHTAHVESMA 441

Query: 361 LLVR 364
           L  +
Sbjct: 442 LFEK 445


>gi|299140681|ref|ZP_07033819.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735]
 gi|298577647|gb|EFI49515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735]
          Length = 479

 Score =  235 bits (599), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 143/405 (35%), Gaps = 64/405 (15%)

Query: 9   QYEQQLAEKVDRLRQMML---AFQVPNLQIFRSE--PIHYRMRAEFHI----WHDGDDLY 59
            YE+QL  K  ++   +       +P             YR + EF      W+  D++ 
Sbjct: 91  PYEEQLKAKQQQVYDQLTRIGKIALPEFNPIMGSVKTKEYRNKLEFGCANKRWYTKDEIA 150

Query: 60  HIMFDQQTKE------------------RMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
            +   ++  E                     I+       L N +  E+    + + L  
Sbjct: 151 AMPPREEGTEGNLNESAIGFHITGAFDKIYPIEKCWLMDDLHNQIRNEINRYAKEQDLAF 210

Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  +    S + + ++ + +H   ++   E A+ L   +     QI  +  
Sbjct: 211 YDIRAQHGLLRDLMMRNSNTGEFMLLVQFHYD-EEGDEEKAMALLQHIADAFPQITSLIY 269

Query: 155 ANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
            +  K                D++ E +      L ++    SF Q N     H+     
Sbjct: 270 VDNQKGNDTFGDLELTTFKGTDFIYETM----EDLKFKVGSKSFYQTNTEQAYHLYSVAR 325

Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A       +L+ +LY G G  +  +A    +V+ +E    ++E A+ N   N ++N    
Sbjct: 326 AFAALTGKELVYDLYTGTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSKVNGIDNTLFY 385

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320
               K                D      R   I  DPPR+G+    V ++   A   ++Y
Sbjct: 386 AGDMKNILTD-----------DFIHEHGRPDVIITDPPRAGMHPDVVQVILNAAPKRVVY 434

Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +SCNP +  RDL ++   + +  +   D FP+T H+E  VLL R+
Sbjct: 435 VSCNPATQARDLQLMDADYKVTAVQPVDMFPHTPHVENVVLLERR 479


>gi|89075082|ref|ZP_01161523.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34]
 gi|89049169|gb|EAR54734.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium sp. SKA34]
          Length = 440

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 146/375 (38%), Gaps = 36/375 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWH 53
              L    ++ Q+  K   L ++M  F +            + +SE  HYR  A   +  
Sbjct: 89  GCNLQHLSHQGQVIAKQQALSELMAKFAITEKDDVTQVEPIVGQSE--HYRRCARLSVRM 146

Query: 54  -DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                +      +Q+K+ + ++     +  +N L+  +   +      +  +  I+ + +
Sbjct: 147 LPNGKMVFGFRKKQSKDIVDVNACPVLATTLNDLLPPLRELLSNLKGRKH-VGHIELVNA 205

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
            + + ++     R L          ++         + L   +++    L      E+  
Sbjct: 206 DNGRVLLI----RHLQPFNDNDLAAIKAFATEHALMLFLAPSSDELDHVLG-----EQPY 256

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
                +        F Q N  +NV M+E  +       Q  +L+L+CG GNFSL LAR  
Sbjct: 257 YDIDDVRLTFSPKDFIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRA 316

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE     V  A  N AAN + N    + +  E    +   +E            +
Sbjct: 317 KAVVGVEGVDEMVARATTNAAANGLGNATFYQANLDEDATKLVWAQE------------Q 364

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQ 349
           F  I +DP R+G       +V   P  ++Y+SCNP +L RD   +L   + + RL + D 
Sbjct: 365 FDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDM 424

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E   L V+
Sbjct: 425 FPHTGHLESMALFVK 439


>gi|307566456|ref|ZP_07628890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS
           21A-A]
 gi|307344844|gb|EFN90247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS
           21A-A]
          Length = 476

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/403 (20%), Positives = 147/403 (36%), Gaps = 65/403 (16%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSE--PIHYRMRAEFHI----WH------ 53
            Y++QL  K  ++   +       +P +          +YR + EF      W+      
Sbjct: 91  PYKEQLKAKEQQVFDQLTRIGKVTLPEINPIMGSIHTENYRNKLEFGCANKRWYTTEELK 150

Query: 54  ---------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---- 100
                    +G   +HI       +   I        L N +   +              
Sbjct: 151 DIPNGIGLTEGAIGFHITGAFD--KIYPIKKCWLMDNLQNDIRNSIYNYALKNKFTFYDT 208

Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
                 L  I    S + + +V + +H   +D   E ++ L   +     QI  +   N 
Sbjct: 209 REQHGLLRSIMIRNSNTGEWMVLIQFHYD-NDNDEERSLGLMKHIANNFPQISSLLYVNN 267

Query: 158 TK----------ICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
            K          I    +D++ E +      L ++    SF Q N     H+ + V    
Sbjct: 268 QKGNDTFNDLDLILYKGKDHIFETM----EELNFKVGPKSFYQTNTEQAYHLYD-VTRRF 322

Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             + G   + +LY G G  +  +A+   +V+ +E    ++E A+ N   N++ N      
Sbjct: 323 ANLTGKELVYDLYTGTGTIANFIAKKAKKVIGIEYVPEAIEDAKVNSKINNIENTLFYAG 382

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYIS 322
             K      R  +E  R             I  DPPR+G+    + ++       I+Y+S
Sbjct: 383 DMKNILTD-RFVKEHGR----------PDVIITDPPRAGMHPDVINVILQARPKRIVYVS 431

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CNP +  RDLS+L+T++ I  +   D FP+T H+E  VLL  +
Sbjct: 432 CNPATQARDLSLLNTSYKIIAVQPVDMFPHTPHVENVVLLEER 474


>gi|87303686|ref|ZP_01086461.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 5701]
 gi|87281791|gb|EAQ73756.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. WH 5701]
          Length = 462

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 144/379 (37%), Gaps = 44/379 (11%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQ 65
           + QL  K D ++Q +      +L++      + P+ YR R    +       L    +  
Sbjct: 96  QAQLVWKQDLVQQALRRIGGQSLEVEPILASATPLGYRNRTTIPLERCPDGQLRAGFYRS 155

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQS 114
            T   + ++        I+ L+  +   +                LR    ++ + + + 
Sbjct: 156 GTHRIVNMNRCPVLDPRIDRLIAPLKRDLEQSDWPVDVDLTEGGGLRHLALRVGHHSGEV 215

Query: 115 DQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
              +++    L     + + W E    L       +          +T     R +    
Sbjct: 216 LLTLISSHSDLPDLAAMAEIWMERWPELVGVGLNIQPLPTNTLMGPRTLEIAGRPW---- 271

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L  +   L  R   ++F Q +      ++  ++ A +   G  +++ YCG G FSL LA 
Sbjct: 272 LNDSFAGLELRIGPDTFFQVHTAQAERLVPLLIEALRPATGRRIVDAYCGIGTFSLPLAA 331

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              RVL +E    SVE AR N   N +N +    + + +   A+    E           
Sbjct: 332 AGARVLGLEQQPSSVEQARLNAGLNGLNGLT---LEAADVALALPEALE----------- 377

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIE--RLA 345
                + +DPPR GL +     + A P   + Y+SCNP +L RDL+ L+   T+   R+ 
Sbjct: 378 -GADGLLLDPPRKGLPERVCEAILASPPERVAYLSCNPATLARDLARLTAAGTLRLLRVQ 436

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T+H+E   +L R
Sbjct: 437 PIDFFPQTQHVEALAVLER 455


>gi|251788451|ref|YP_003003172.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya zeae Ech1591]
 gi|247537072|gb|ACT05693.1| RNA methyltransferase, TrmA family [Dickeya zeae Ech1591]
          Length = 444

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/362 (23%), Positives = 141/362 (38%), Gaps = 32/362 (8%)

Query: 11  EQQLAE--KVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGD--DLYHIMF 63
           +Q L    K   L+ +M       VP  ++       YR RA   +++      L     
Sbjct: 96  DQSLQHRSKAAALKHLMKRETGENVPEPEVIAGAAYGYRRRARLALYYQAKTRRLQMGYR 155

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
              + + + I+        + AL+  +   +R    +R +L  ++ + ++    ++    
Sbjct: 156 QAGSHDLVDINACPILRPELEALLAPLRDCLRQLQAVR-RLGHVELVLAEQGPLVIL--- 211

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
            R LD         L     A+   +     A+    CL  D    R+      L     
Sbjct: 212 -RHLDPLCEADRQALTAFAAAQGVALFAAPEADALS-CLYGDAPSYRIA----GLSLAFS 265

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              F Q N  IN  M+E  LA       D +L+L+CG GNF+L LA    RV+ VE    
Sbjct: 266 PRDFIQVNDEINQRMVEQALAWLDPQPQDRVLDLFCGMGNFTLPLAERAGRVVGVEGVAA 325

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V+  R N   N +  V     + +E             +      S  F  + +DP R+
Sbjct: 326 LVDKGRENATRNGLTQVTFYHHNLEE------------DVTRQPWASMGFDKVLLDPARA 373

Query: 303 GLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G       +V+  P  ++YISCNP +L RD  +L +  + + RL + D FP+T H+E   
Sbjct: 374 GAPGVMPQIVKLAPRRVVYISCNPTTLARDSKLLMAAGYRLARLTMLDMFPHTGHLESMA 433

Query: 361 LL 362
           L 
Sbjct: 434 LF 435


>gi|256822067|ref|YP_003146030.1| TrmA family RNA methyltransferase [Kangiella koreensis DSM 16069]
 gi|256795606|gb|ACV26262.1| RNA methyltransferase, TrmA family [Kangiella koreensis DSM 16069]
          Length = 448

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/381 (22%), Positives = 149/381 (39%), Gaps = 38/381 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--------QIFRSEPIHYRMRAEFHIW- 52
             +L       Q+A K + L + +  F   +         +  +++ + YR +A   +  
Sbjct: 87  GCSLQHMSNSAQIAHKQNVLVEQLDHFGGHSYKTDDYELVEPLQADVLGYRRKARLGVKF 146

Query: 53  -HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
                       ++++     ID  +     +  L+  +   I        K  Q++   
Sbjct: 147 VPKKGGALVGFREKRSSFLATIDSCVVLDPRVGQLITPLKNMISELDSN-DKTAQLEVAM 205

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYV 167
                A+V     R L     +      +        I L  +   T   L     RD++
Sbjct: 206 GDDQVALVV----RHLVPLTEKDQNLWIEFGKEHGLYIYLQPKGPDTVHLLYGPDTRDWL 261

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
             RL      +++      FTQ N  IN  M++  +   +    D +L+L+CG GNF++ 
Sbjct: 262 SYRLEDYDVEMLFH--PMDFTQVNDSINSKMVKRAIEWLEPKADDRILDLFCGLGNFTIP 319

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDI 285
           LA     V+ VE ++  V+  + N   N ++NV+    +   +FTQ    ++ FN+    
Sbjct: 320 LATQVQNVVGVEGSEAMVKRGQMNAKHNGLSNVEFYATNLQDDFTQEEWAQQGFNK---- 375

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIER 343
                    I +DPPRSG  D    + +  P  I+Y+SCNP +L RD   L    + + +
Sbjct: 376 ---------ILIDPPRSGALDVVQNITRFNPERIVYVSCNPATLARDAGELKEKGYKLVK 426

Query: 344 LALFDQFPYTRHMECGVLLVR 364
             + D FP+T H E   L  R
Sbjct: 427 AGVMDMFPHTSHTESIALFER 447


>gi|282859473|ref|ZP_06268578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia
           JCVIHMP010]
 gi|282587701|gb|EFB92901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia
           JCVIHMP010]
          Length = 476

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 140/402 (34%), Gaps = 63/402 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WH------ 53
            Y +QL  K  ++   +       L  F           YR + EF      W+      
Sbjct: 91  PYSEQLKAKQQQVFDQLTRIGKIELPEFSPIMGSVHTKAYRNKLEFGCANKRWYTAEELQ 150

Query: 54  ---------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---- 100
                    +G   +HI       +   I+       L N +   +        L     
Sbjct: 151 DMPEGIGLTEGAIGFHITGAFD--KIYPIEKCWLMDNLQNEIRNSIRNYALENNLTFFDL 208

Query: 101 ---RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE---CAIRLRDALHARKYQIQLIGR 154
                 L  I    S + + +V + +H  ++   +        L D+       + +  +
Sbjct: 209 RQQHGLLRDIMVRNSNTGEWMVLIQFHYDVEGDEQRALGLMQHLADSFPQISSLLYVNNQ 268

Query: 155 A-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
                 N   + L    D++ E +      L ++    SF Q N     H+ + V     
Sbjct: 269 KGNDTFNDLDLILFKGNDHIFETM----EDLRFKVGPKSFYQTNTEQAYHLYD-VARRFA 323

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            + G+  + +LY G G  +  +A+   +V+ +E    ++E A+ N   N + N       
Sbjct: 324 NLTGEELVYDLYTGTGTIANFVAKRAKKVIGIEYVPEAIEDAKVNSEINKIQNTLFYAGD 383

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISC 323
            K+              +       R   I  DPPR+G+    V ++       I+Y+SC
Sbjct: 384 MKDILT-----------ESFVQEHGRPDVIITDPPRAGMHPDVVNVILGAHPKRIVYVSC 432

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +  RDL++L   + +  +   D FP+T H+E  VLL  +
Sbjct: 433 NPATQARDLALLDVDYKVVAVQPVDMFPHTPHVENVVLLEER 474


>gi|326629015|gb|EGE35358.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 437

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 106 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 162

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 163 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 220

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 221 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 272

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 273 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 332

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 333 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 380

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 381 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 436


>gi|323131314|gb|ADX18744.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 437

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 106 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 162

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 163 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 220

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 221 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 272

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 273 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 332

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 333 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 380

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 381 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 436


>gi|218281544|ref|ZP_03487973.1| hypothetical protein EUBIFOR_00538 [Eubacterium biforme DSM 3989]
 gi|218217333|gb|EEC90871.1| hypothetical protein EUBIFOR_00538 [Eubacterium biforme DSM 3989]
          Length = 457

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 147/378 (38%), Gaps = 34/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57
              L+  +Y  Q   K   L++ ++ +   N      I   EP+ YR   +     +  +
Sbjct: 73  GCALMHVKYPAQCKMKEGNLKETLIKYADYNGRILPIIKNPEPLSYRNSCKLPFGEEYGE 132

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           LY  M+++ T    +++     S L+      ++     + +    L   D       + 
Sbjct: 133 LYTGMYERDTNHFQKMERCYVHSKLLEQTRQAVL-----KIMNEHHLKMYDDKKKTGYRT 187

Query: 118 IVTLIYHRLL-------DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--D 168
           +V   +   +        +   E  I     L       Q +    K ++  D  ++  +
Sbjct: 188 LVMKEFDSKIQIIFVTGKENLSEEFIHDVTQLEGVVSIWQSVKTETKREVFGDMRFIWGE 247

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           E++ +    +    +  SF Q N   +V++   V+          +E Y G G  SL + 
Sbjct: 248 EKMHLQLEDIQLSLLPRSFFQLNTKQSVNLYN-VVKDWMPRSKTTVEAYSGIGAISLFVK 306

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
                ++ VE  + +V+ A  N   NH +NV  +   +      + +E++          
Sbjct: 307 DKAQEIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHLVQEKDV--------- 357

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
                T+ VDPPRSGLDD     +       ++Y+SCNP +L +DL +L   + I ++  
Sbjct: 358 ----DTLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKDLGVLKKEYRIVKIQP 413

Query: 347 FDQFPYTRHMECGVLLVR 364
            D F  T H+E   LLVR
Sbjct: 414 VDMFSQTPHVESVTLLVR 431


>gi|317502954|ref|ZP_07961044.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606]
 gi|315665920|gb|EFV05497.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606]
          Length = 479

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 148/405 (36%), Gaps = 64/405 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WHDGDDLY 59
            YE+QL  K  ++   +       L  F+      +   YR + EF      W+  +++ 
Sbjct: 91  PYEEQLKAKQQQVFDQLTRIGKVELPPFQPILGSVKTKEYRNKLEFGCANKRWYTKEEIA 150

Query: 60  HIMFDQQTKE------------------RMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
            +   ++ +E                     I        L N +  E+    +   +  
Sbjct: 151 ALPPKEEGQEGNLSESAIGFHITGAFDKIYPIKKCWLMDDLHNEIRNEISRYAKENSISF 210

Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  +    S + + ++ + +H   ++   + A++L   +     QI  +  
Sbjct: 211 YDIRAQHGLLRDLMMRNSNTGEFMLLVQFHYD-EEGDEQKAMQLLQHIADTFPQITSLIY 269

Query: 155 ANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
            +  K                D++ E +      L ++    SF Q N     H+     
Sbjct: 270 VDNQKGNDTFGDLELTTFKGTDFIYETM----EDLKFKVGPKSFYQTNTDQAYHLYCVAR 325

Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +  +   G+L+ +LY G G  +  +A    +V+ +E    ++E A+ N   N +NN    
Sbjct: 326 SFAQLTGGELVYDLYTGTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSHVNGINNTLFY 385

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320
               K+               D      +   I  DPPR+G+    V ++   +   I+Y
Sbjct: 386 AGDMKDILTD-----------DFIQGHGQPDVIITDPPRAGMHADVVKVILNASPKRIVY 434

Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +SCNP +  RDL ++   + +  +   D FP+T H+E  VLL R+
Sbjct: 435 VSCNPATQARDLQLMDADYKVAAVQPVDMFPHTPHVENVVLLERR 479


>gi|198244789|ref|YP_002216931.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197939305|gb|ACH76638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
          Length = 431

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------EVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|154249037|ref|YP_001409862.1| RNA methyltransferase [Fervidobacterium nodosum Rt17-B1]
 gi|154152973|gb|ABS60205.1| RNA methyltransferase, TrmA family [Fervidobacterium nodosum
           Rt17-B1]
          Length = 446

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 150/386 (38%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDD 57
              ++   Y++QL  K + +   +     F         S+    YR + E+   ++ + 
Sbjct: 79  GCHIMDIDYKKQLELKREVVVDQLKRIAKFDGKVSDTIESDIEFGYRNKMEYTFTYENNK 138

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQ 106
           +   +  + + + + ID         N  + E+   + +  +           L+  + +
Sbjct: 139 VKLGLKMRNSNKVVDIDDCPISPTSFNKALQEIPEIVEISKVKIYNPKSRAGTLKHLVMR 198

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
             +  +Q+    VT        +       ++ + +      I ++  +++  I L   Y
Sbjct: 199 YSHSNNQTMAIFVT---KTERFEEAEFIRTQILNRIPQINSIIHVMNSSDE--IVLRGPY 253

Query: 167 ----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNG 221
                   L V      ++    +F Q N  + V M+++V          ++L+LY G G
Sbjct: 254 KTLYGSGVLEVEMDYEKFQIPPTAFFQNNYNVAVKMVDFVTKNLNLTGSENILDLYAGIG 313

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F++ LA     V+AVE +  SV+A + N   N++ N++       EF ++         
Sbjct: 314 TFTMRLAMLSRNVVAVESSHISVKAGKANANINNLRNIRYEESDVVEFLKSYTG------ 367

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTH 339
                        I +DPPRSG        +       I YISC+  +L RD+++L   +
Sbjct: 368 ---------NADIIILDPPRSGAGKEVCKEILRIKPHKIAYISCDSSTLARDIALLKEDY 418

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            I  +  FD FP T H+E  VL+ RK
Sbjct: 419 NIIAVQPFDMFPQTYHVETVVLMERK 444


>gi|268591277|ref|ZP_06125498.1| hypothetical protein PROVRETT_07550 [Providencia rettgeri DSM 1131]
 gi|291313252|gb|EFE53705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia rettgeri
           DSM 1131]
          Length = 443

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 146/357 (40%), Gaps = 25/357 (7%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KERMR 72
           A  +  L Q   +  +    +   EP  YR RA   + +       +M  +Q+     + 
Sbjct: 105 AHALAYLMQRETSLDISVPSVISGEPYGYRRRARLGLQYQPKSKNVVMGFRQSQSNTLVD 164

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I      S  ++ L+  +   I      +AKL  ++ + + + + ++     R L     
Sbjct: 165 IKNCPILSPDLDILLKPLSECINQL-SNKAKLGHVELIRADNCKIVLI----RYLTPFSL 219

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
               +L D  +     I L G     +  L  +       VAG  L +     +F Q N 
Sbjct: 220 SDTQKLSDFENQHGVSIWLAGNDENLQ-ALSPNSPQPEYQVAGELLKFN--PLNFIQVNG 276

Query: 193 GINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            +N  M+E  LA      +  +L+L+CG GNF+L +AR    V+ VE  +  VE AR N 
Sbjct: 277 QVNQQMVEQALAWLDLNSEDRVLDLFCGMGNFTLPIARLVKSVVGVEGVENLVEQARNNA 336

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N + N      + +             ++       + F  + +DP R+G       +
Sbjct: 337 QLNTICNATFYNENLEA------------QIHTQPWAVHGFNKVLLDPARAGAAGVMEHL 384

Query: 312 VQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           ++  P  I+Y+SCNP +L RD   +L   + + +L + D FP T H+E   L +R+P
Sbjct: 385 IKLMPEKIVYVSCNPTTLARDSKVLLDGGYQLLQLRMLDMFPQTSHLESMALFIRRP 441


>gi|331085907|ref|ZP_08334990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406830|gb|EGG86335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 458

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 147/395 (37%), Gaps = 51/395 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMML----AFQVPNLQIFRSE-PIHYRMRAEFHIW--- 52
            G +     Y+ Q+  K ++++ +M      +      +  S     YR + EF      
Sbjct: 81  GGCMYQTMDYQAQVKMKAEQIQSIMDAAVDGYSYTFEGVKESPKEFAYRNKMEFSFGDEY 140

Query: 53  ---------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN---ALMIEMMATIRLEPLL 100
                    H     Y ++     K  +  D     S +++      +     ++    L
Sbjct: 141 KDGPLSLGLHKKGSTYDVLTASDCK-LVHEDMTQILSCVLDYFKERGVSYYKKMQHIGYL 199

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGR 154
           R  L +    T +    +VT            E  + L         LH     +  + +
Sbjct: 200 RHLLLRRGDTTGEILVNLVTTTQEEHDLAPLVEKLLALPVEGKIVGILHILNDSLSDVVQ 259

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DL 213
           +++TKI   +DY  E++      L ++    SF QPN+     +   V      I    +
Sbjct: 260 SDETKILYGQDYFYEKIM----GLEFKITPFSFFQPNSRGAEVLYSTVREYIGDIHDMTV 315

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +L+ G G  + VLA    +V+ VEI + +VEAA+ N   N ++N + +     +     
Sbjct: 316 YDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAERNGLHNCRFIAGDVFKVL--- 372

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331
                       D    +   I +DPPR G+    +  +      +I+YISC   SL RD
Sbjct: 373 ------------DEIEEKPDVIVLDPPRDGIHPKALPKILDYGVENIVYISCKATSLARD 420

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           L ++    + + +    DQF  T H+E   LL +K
Sbjct: 421 LEMIQARGYRVVKCTAVDQFCQTVHVETVCLLKKK 455


>gi|283835447|ref|ZP_06355188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae
           ATCC 29220]
 gi|291068628|gb|EFE06737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Citrobacter youngae
           ATCC 29220]
          Length = 432

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/357 (24%), Positives = 145/357 (40%), Gaps = 30/357 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHI--WHDGDDLYHIMFDQQTKER 70
           Q   K   L ++M  ++V +  +    P  YR RA   +        L        + + 
Sbjct: 100 QQRSKSAALSRLM-KYEVSD--VIADTPWGYRRRARLSLNYRPKEQKLQMGFRKSGSSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+  + A +     LR  L  ++ + + S     TL+  R     
Sbjct: 157 IDVKQCPVLVPRLEALLPHIRACLESLQGLRH-LGHVELVQAGSG----TLMILRHTAPL 211

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
             +   +L    H++   + L  ++      L+    +E        L        F Q 
Sbjct: 212 SVQDKEKLECFSHSQGLSLFLAPQSE----ILESIS-EESPWYDSNGLRLSFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N G+N  M+   L       GD +L+L+CG GNF+L LAR    V+ VE     VE AR 
Sbjct: 267 NEGVNQQMVARALEWLDVQPGDRVLDLFCGMGNFTLPLARRAASVVGVEGVPALVEKARE 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N ++NV     + +E             +         F  + +DP R+G      
Sbjct: 327 NALNNGLHNVTFFHENLEE------------DVTRQPWAKNGFDKVLLDPARAGAAGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +++  P  ++Y+SCNP +L RD  ++L+  + I +LA+ D FP+T H+E  VL  R
Sbjct: 375 HIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRQLAMLDMFPHTGHLESMVLFER 431


>gi|110801335|ref|YP_696793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens ATCC 13124]
 gi|168208816|ref|ZP_02634441.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str.
           ATCC 3626]
 gi|182624048|ref|ZP_02951836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens D str. JGS1721]
 gi|110675982|gb|ABG84969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens ATCC 13124]
 gi|170713002|gb|EDT25184.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str.
           ATCC 3626]
 gi|177910941|gb|EDT73295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens D str. JGS1721]
          Length = 451

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 150/395 (37%), Gaps = 53/395 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHD--- 54
             +     YE+QL  KV++++ +    +VP  +     + P    YR + E+    +   
Sbjct: 79  GCSSQTIPYEKQLELKVEQVKDLFKEAEVPTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103
           G+    +    ++   + +D  +        I    ++            +     LR  
Sbjct: 139 GELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154
           + +      ++++ +V L+    +D    E            +L+  +H     +     
Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTELIKGLNLKGKLKSIIHTESDALSEAVI 255

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
             K  I    D++ E L      L ++    SF Q N+     +   V          ++
Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + +
Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
           +                +   I +DPPRSG+    +  V  +  P I+Y+SCNP +L  D
Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L +L    + IE+  L D FP T H+E  V L +K
Sbjct: 417 LKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451


>gi|18311096|ref|NP_563030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens str. 13]
 gi|168212849|ref|ZP_02638474.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str.
           F4969]
 gi|50401771|sp|Q8XIK5|Y2114_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE2114
 gi|18145779|dbj|BAB81820.1| RNA methyltransferase-like protein [Clostridium perfringens str.
           13]
 gi|170715477|gb|EDT27659.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str.
           F4969]
          Length = 451

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 150/395 (37%), Gaps = 53/395 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHD--- 54
             +     YE+QL  KV++++ +    +VP  +     + P    YR + E+    +   
Sbjct: 79  GCSSQTIPYEKQLELKVEQVKDLFKEAEVPTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103
           G+    +    ++   + +D  +        I    ++            +     LR  
Sbjct: 139 GELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154
           + +      ++++ +V L+    +D    E            +L+  +H     +     
Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTELIKGLNLKGKLKSIIHTESDALSEAVI 255

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
             K  I    D++ E L      L ++    SF Q N+     +   V          ++
Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + +
Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
           +                +   I +DPPRSG+    +  V  +  P I+Y+SCNP +L  D
Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L +L    + IE+  L D FP T H+E  V L +K
Sbjct: 417 LKVLETKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451


>gi|307825599|ref|ZP_07655817.1| RNA methyltransferase, TrmA family [Methylobacter tundripaludum
           SV96]
 gi|307733485|gb|EFO04344.1| RNA methyltransferase, TrmA family [Methylobacter tundripaludum
           SV96]
          Length = 444

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 145/374 (38%), Gaps = 28/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57
             +    +   Q+  K D L           +    Q        YR +A   + +    
Sbjct: 88  GCSFQHVEASAQIRIKQDLLVDQFKRIGKTEIPELWQPLVGPHWGYRSKARMGVKYVEKK 147

Query: 58  LYHIMFDQQTKERM--RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              ++  ++ +      I+  +    ++   ++ +   I     ++ K+ QI+       
Sbjct: 148 NRVLVGFRERRHPYLAEIESCIVMHPVVGTKLMALSEMIGGL-TIKDKIPQIEVAIGDQQ 206

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY-VDERLTVA 174
             +      R+L+        R+R+  H     + L  +   T + LD +  +     + 
Sbjct: 207 CVL----SFRVLEPPTDADKERMREFAHEHDISLCLQSKGPDTIVPLDGEPELIPTYALP 262

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
            + L ++     FTQ N  IN  M+  VL      + D +L+L+CG GNF+L +A+    
Sbjct: 263 DQGLEFKFKPAMFTQVNYEINKQMINRVLETLALNENDSVLDLFCGLGNFTLPMAKFAGH 322

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE  +P V  A+ N   N + NV+       +             + D    + ++ 
Sbjct: 323 VVGVEGDQPLVNHAKENARHNGIENVEFYAADLSK------------DISDQPWANRKYN 370

Query: 294 TIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
            I +DP R+G  D      +  P  I+Y+SCNP +L RD  IL     + + +  + D F
Sbjct: 371 KIMLDPSRAGASDVLHHFKKWQPEQIVYVSCNPSTLARDAGILVNELGYKLVKAGVMDMF 430

Query: 351 PYTRHMECGVLLVR 364
           P T H+E   L  +
Sbjct: 431 PQTGHVESMALFEK 444


>gi|197247468|ref|YP_002147867.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197211171|gb|ACH48568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 431

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPSDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|62181467|ref|YP_217884.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224584748|ref|YP_002638546.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|75481161|sp|Q57KF9|RUMA_SALCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|62129100|gb|AAX66803.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224469275|gb|ACN47105.1| 23S rRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322715951|gb|EFZ07522.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 431

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 140/356 (39%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +V +  I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM-KHEVKD--IIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|261879348|ref|ZP_06005775.1| TrmA family RNA methyltransferase [Prevotella bergensis DSM 17361]
 gi|270333911|gb|EFA44697.1| TrmA family RNA methyltransferase [Prevotella bergensis DSM 17361]
          Length = 489

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 141/409 (34%), Gaps = 64/409 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHI----WHDGDDLY 59
            Y +QL  K  ++   +              +   +   YR + EF      W   ++L 
Sbjct: 91  PYAEQLKAKQQQVEDQLRRIGKVELPQLNPIMGSEKIYEYRNKLEFGCCSKRWFTREELD 150

Query: 60  HIMFDQQTKERMRIDYFMPG----------SLLINALMIEMMATIRLEP----------- 98
           +   +  +     I + + G            L++ +  E+   I               
Sbjct: 151 NAELNLDSGNHAAIGFHIAGAFDKIYPIRKCWLMDDVHNEIRNEIERYAKATNMTFYDVR 210

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
             R  L  + + TS +   +V + +H   +    E A  L   +  R  QI  +   +  
Sbjct: 211 AQRGLLRSLMFRTSNTGGWMVLVQFHYD-EPQDEEKAQALLQHIADRFPQITSLIYVDNQ 269

Query: 159 K-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           K       + L      + +      L ++    SF Q N     H+   V         
Sbjct: 270 KGNDTFGDLDLITYQGTDCIYETMEDLKFKVGPKSFYQTNTDQAYHLYSVVRNMCFKGSD 329

Query: 212 D-------------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
                         + +LY G G  +  +A+   +V+ +E    ++E A+ N   N + N
Sbjct: 330 SGDGDESGTERRPLIYDLYTGTGTIANFVAKKASQVIGIEFVPEAIEDAQVNSRINGIEN 389

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYP 316
            +      K                D          I  DPPR+G+ +  V ++   A  
Sbjct: 390 TQFFAGDMKNVLTD-----------DFISEHGCPDIIITDPPRAGMHEDVVRVILNAAPA 438

Query: 317 HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            I+Y+SCNP +  RDL++L   + +E +   D FP+T H+E  V L R+
Sbjct: 439 CIVYVSCNPATQARDLALLDQDYRVEEVQPVDMFPHTPHVENVVKLTRR 487


>gi|143582026|sp|Q0HXI0|RUMA_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 449

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 34/376 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56
              L       Q   K   L  +M  F       +     E  HYR RA      D    
Sbjct: 91  GCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTK 150

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L        + + + ID  +  +  ++ L I   A +  +   ++ L  ++ + + +  
Sbjct: 151 QLSLGFRASSSNQVVPIDSCLVLAKPLSDL-IAPFAKLLNQLAAKSSLGHLELIDADNGH 209

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170
             V  I   L D    +   +L       +  I L          N T +      +D++
Sbjct: 210 FAVIRITKSLND----KDMAKLAQFAEQHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDK 265

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
                 +L +     +F Q NA IN  M+   L       G+ +L+L+CG GNFSL LA+
Sbjct: 266 ADATPVSLTF--TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAK 323

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     V  AR N AAN ++N+          +  +  E    ++       
Sbjct: 324 LGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGD---LSADLSCEPWMGKI------- 373

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347
                + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L 
Sbjct: 374 ---DKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 430

Query: 348 DQFPYTRHMECGVLLV 363
           D FP T H+E   L  
Sbjct: 431 DMFPQTHHIEAMALFE 446


>gi|114046682|ref|YP_737232.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-7]
 gi|113888124|gb|ABI42175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-7]
          Length = 463

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 34/376 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56
              L       Q   K   L  +M  F       +     E  HYR RA      D    
Sbjct: 105 GCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTK 164

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L        + + + ID  +  +  ++ L I   A +  +   ++ L  ++ + + +  
Sbjct: 165 QLSLGFRASSSNQVVPIDSCLVLAKPLSDL-IAPFAKLLNQLAAKSSLGHLELIDADNGH 223

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170
             V  I   L D    +   +L       +  I L          N T +      +D++
Sbjct: 224 FAVIRITKSLND----KDMAKLAQFAEQHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDK 279

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
                 +L +     +F Q NA IN  M+   L       G+ +L+L+CG GNFSL LA+
Sbjct: 280 ADATPVSLTF--TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAK 337

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     V  AR N AAN ++N+          +  +  E    ++       
Sbjct: 338 LGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGD---LSADLSCEPWMGKI------- 387

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347
                + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L 
Sbjct: 388 ---DKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 444

Query: 348 DQFPYTRHMECGVLLV 363
           D FP T H+E   L  
Sbjct: 445 DMFPQTHHIEAMALFE 460


>gi|168820323|ref|ZP_02832323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205342808|gb|EDZ29572.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320087382|emb|CBY97147.1| hypothetical protein SENTW_3066 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 431

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|209695937|ref|YP_002263867.1| 23S rRNA 5-methyluridine methyltransferase [Aliivibrio salmonicida
           LFI1238]
 gi|226725377|sp|B6EKM3|RUMA_ALISL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|208009890|emb|CAQ80203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aliivibrio salmonicida
           LFI1238]
          Length = 438

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 147/369 (39%), Gaps = 26/369 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58
              L   Q+ +Q+  K D+L+++M    V    +          YR RA   +       
Sbjct: 90  GCNLQHLQHAEQIIAKNDKLQELMKKQGVDACDVAEPILANEHDYRRRARISLIM-NKQT 148

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
             + F  + K+   I       +L+  L   + +   L   L+ K         Q+D   
Sbjct: 149 NQLDFGFRKKQSKEIVNVRHCPVLVKELDQHLESLYTLLNQLKGKRHLGHVELVQADNGS 208

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V LI H  +     +    L      R   + L+  ++     L+  Y +E   V     
Sbjct: 209 VLLIRH--VAAFNEKDQQALLHYCEERDLILYLMPESD----VLNHVYGEEPYYVIDEVK 262

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
           IY      F Q NA IN  M+   L        D +L+L+CG GNFSL LA+    V+ +
Sbjct: 263 IY-FTPKDFIQVNASINDSMVNQALTWLDLNADDCVLDLFCGLGNFSLPLAQKVKTVVGI 321

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E  +  V+ A+ N   N ++NV   + + +E                    S +F  I +
Sbjct: 322 EGVEEMVKRAQSNAKRNELDNVTFYQANLEEPIDQQV------------WASTKFTKILL 369

Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           DP R+G       + +  P  ++Y+SCNP +L RD  +L    + + RL + D FP+T H
Sbjct: 370 DPARAGAAGVMQTVAKLKPETVVYVSCNPATLARDSQLLIQRGYKLTRLGMLDMFPHTGH 429

Query: 356 MECGVLLVR 364
           +E   L  R
Sbjct: 430 LESMALFER 438


>gi|205353903|ref|YP_002227704.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273684|emb|CAR38674.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
          Length = 431

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|16766263|ref|NP_461878.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167550177|ref|ZP_02343934.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993449|ref|ZP_02574543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197265036|ref|ZP_03165110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|207858223|ref|YP_002244874.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|20140074|sp|Q8ZME1|RUMA_SALTY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|16421508|gb|AAL21837.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197243291|gb|EDY25911.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205324674|gb|EDZ12513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328450|gb|EDZ15214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|206710026|emb|CAR34381.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261248093|emb|CBG25928.1| Uracil-5--methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995093|gb|ACY89978.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159518|emb|CBW19037.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913979|dbj|BAJ37953.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321225637|gb|EFX50691.1| 23S rRNA Uracil-5- -methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|332989828|gb|AEF08811.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 431

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|34763070|ref|ZP_00144043.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887269|gb|EAA24367.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 354

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 155/367 (42%), Gaps = 34/367 (9%)

Query: 20  RLRQMMLAF-QVPNLQIF----RSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            + ++M     + ++Q+       +  +YR +         + +    F +++ E   +D
Sbjct: 1   MIEEVMKKIAGLSDIQVNDVLASEDIYNYRNKIIEPFSVYANKIITGFFKRKSHEVFEVD 60

Query: 75  YFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTSQSDQAIVTLIYHR-L 126
             +  S L N ++ E+   +    +        +  L  I    + +++A+V LI +   
Sbjct: 61  ENILNSKLGNKIIKELKEILNKNKISVYDENTHKGILRNIMIRPNSNNEAMVVLIINSNK 120

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR----DYVDERLTVAGRTLIYRQ 182
           + +  ++   +LR+ +   K  I +   + KT   +       Y ++ +      + +  
Sbjct: 121 ITENIKKILFKLRENIKEIK-SIYISLNSKKTNTVIGEKNILIYGEKSIKENINGIEFHI 179

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
              SF Q N      + +  ++    I    +++ Y G G   +++A+   +V A+EI K
Sbjct: 180 SPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSGTGTIGMIIAKKAKKVYAIEIVK 239

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            + E        N + N++ +  + ++             +  +  ++ R  TI  DPPR
Sbjct: 240 SASEDGEKTAKENGIENIEFINGAVEK------------EIIKLINNNKRIDTIIFDPPR 287

Query: 302 SGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
            GL+ + +  V       ++YISCNP +  RD+ +     +T+++L   D FP T H+EC
Sbjct: 288 KGLEASIIVTVAKLNLKEVVYISCNPSTFARDVKLFAEKGYTLKKLQAVDMFPQTSHIEC 347

Query: 359 GVLLVRK 365
             L+V++
Sbjct: 348 VGLIVKE 354


>gi|227893144|ref|ZP_04010949.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM
           16047]
 gi|227865010|gb|EEJ72431.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus ultunensis DSM
           16047]
          Length = 460

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 141/386 (36%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y++QL  K + + + +  +             I   +P HYR +A++ I +    
Sbjct: 91  LAHLSYDKQLEFKRNNMLESLKKYHPRGYAKYKVKKTIPAPDPWHYRNKAQYQIENVHGK 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +   +F   +   + +      S            LI  L + +    R  P ++  + +
Sbjct: 151 IKLGLFAPNSHRLIDLPKMPTQSEDTQKTEREIKVLIEKLHVPVANYRRHLPGIKTVVVR 210

Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163
                 +    ++T+ +  + L    +E      +                 NKT+  L 
Sbjct: 211 QSEANKEIQVTLITIDHKIKNLIPLAKEIMKLDHVVSVYQNETEWQNPQVWGNKTEKLLG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           ++ + + +      L       +F Q N     ++    L          L++ Y G G 
Sbjct: 271 KNQIVKEILGKKFAL----SPRAFFQLNPVQTTNLYSEALKYLDLTPDQTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A     V+ +E    +V+ A +N+  NH+ N   ++ S+++             L
Sbjct: 327 LGILAADRVKHVVGIETIPEAVKDAEHNVELNHIKNADYIQGSTEKV------------L 374

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL  + +  +        +YISCNP +L +DL +LS  + 
Sbjct: 375 PELQNSGVSIDALIVDPPRTGLAKSLIKTILRVKPQTFVYISCNPSTLAQDLVLLSEAYD 434

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    L+ + 
Sbjct: 435 VRVIQNVDMLPQTPRCEAIAKLILRK 460


>gi|113478164|ref|YP_724225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Trichodesmium
           erythraeum IMS101]
 gi|110169212|gb|ABG53752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Trichodesmium
           erythraeum IMS101]
          Length = 485

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 145/412 (35%), Gaps = 76/412 (18%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIW-HDGDDLYHIMF 63
           YE QL  K +++ Q +           +  +       YR +  + +   +  ++    +
Sbjct: 92  YEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTFGYRNKVTYPLSISNEGEVKAGYY 151

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRAKLFQIDYLTS 112
            + + + + ++         N L+ E+   I               +LR    +I   T 
Sbjct: 152 QKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKWKIYDEHKRIGILRHLSLKIGEKTG 211

Query: 113 QSDQAIVTLIYHRLLDDA----------WRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           +    +V        +            W E   RL         +        +T    
Sbjct: 212 EIILTLVVNGSEENPEKLLPGITVQAQKWLEDYSRLVGVCLNYNSKATNTIFGQQTVCVA 271

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
            R YV E+ +     L ++   N+F Q N      ++E V+        +++ + YCG G
Sbjct: 272 GRFYVREKFS----GLEFQLTPNTFFQVNTKTTEKLVEIVIQELALSNSEIIVDAYCGVG 327

Query: 222 NFSLVLARHFDRV-------------------------LAVEIAKPSVEAARYNIAANHV 256
            F L LA++  +V                         + +E+   ++E A++N   NH+
Sbjct: 328 TFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVIGLEVQGVAIEQAKFNAKINHL 387

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--A 314
            NV       +     +                 +   + +DPPR G D + +  +    
Sbjct: 388 TNVHFYEGKVERLLPQL---------------EVKPDIVLLDPPRKGCDRSVLETLLEIL 432

Query: 315 YPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
              I+YISC P +L RDL  L +T  + + ++   D FP T H+EC   L++
Sbjct: 433 PERIVYISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLIK 484


>gi|56414909|ref|YP_151984.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168261899|ref|ZP_02683872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|197363837|ref|YP_002143474.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|81359864|sp|Q5PEJ4|RUMA_SALPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|56129166|gb|AAV78672.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197095314|emb|CAR60871.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205349066|gb|EDZ35697.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 431

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|309805272|ref|ZP_07699324.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165506|gb|EFO67737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 09V1-c]
          Length = 361

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 145/375 (38%), Gaps = 40/375 (10%)

Query: 16  EKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            K + ++  +L F   N Q       I   +  +YR +A++ I    + +   M+  +++
Sbjct: 3   FKKELIKDSLLKFHPRNYQKIKIKNTIPAPKQWYYRNKAQYQIESIKNKISLGMYAPKSQ 62

Query: 69  ERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           + + +      S            LI  + I +  +   +  ++  + +  + T +    
Sbjct: 63  KIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHATDEIQVT 122

Query: 118 IVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           +VT+  +    D   E  I L + +            +   NKT   + ++Y+ E++   
Sbjct: 123 LVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYITEQILNK 182

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233
                +     +F Q N      +    L   +     +L + Y G G   ++ +    +
Sbjct: 183 ----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGTLGILASEKVKQ 238

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E    ++  A++N   N+V N + +  S ++    M+++                 
Sbjct: 239 VIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------------GIAID 286

Query: 294 TIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + VDPPR+GL+   V  +        +YISCNP +L RDL +LS  + +  +   D  P
Sbjct: 287 ALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQPVDMMP 346

Query: 352 YTRHMECGVLLVRKP 366
            T   E    LV + 
Sbjct: 347 QTPRWEGIAKLVLRK 361


>gi|218132418|ref|ZP_03461222.1| hypothetical protein BACPEC_00277 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992756|gb|EEC58758.1| hypothetical protein BACPEC_00277 [Bacteroides pectinophilus ATCC
           43243]
          Length = 547

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 145/391 (37%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHD-GD 56
                   Y +QL  K  ++++++      + +        +   YR + E+    +  D
Sbjct: 82  GCIFQTMDYNEQLKMKASQVKKLLDDVIRTDYEFEGIKASPDVTGYRNKMEYTFGDEFKD 141

Query: 57  DLYHIMFDQQTK--ERMRIDYFMPGSL----LINALMIEM-------MATIRLEPLLRAK 103
               +   +++   + +  D  +        ++N +   M          +  +  LR  
Sbjct: 142 GPLALGLHKRSSMYDIVTCDGCLLVDEDYDRILNCVHEHMSRAGLPFFHKVTHKGYLRHL 201

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRANK 157
           L +    T      ++T        DA  +    L         LH     +    +  +
Sbjct: 202 LVRKAVKTGDILIDLITTTQMEYSLDALADELKALDLKGHITGFLHTYNDSVADAIKNER 261

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
           T+I   +D+  E L      L +R    SF Q N+     +           +   + +L
Sbjct: 262 TEIVFGQDFFYEELL----GLTFRITPFSFFQTNSLGAEVLYSTAREYIGTTKDKTVFDL 317

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  + ++A    +V+ VEI + +V AAR N A N +   + +              
Sbjct: 318 YSGTGTIAQLMAPVAKKVIGVEIVEEAVVAARENAAHNGLTQCEFIAGDV---------- 367

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI 334
                LK ID    +   I +DPPR G+    +  + +Y   HI+YISC   SL RDL  
Sbjct: 368 -----LKVIDDIKDKPDIIILDPPRDGIHPKALPKILSYGVDHIVYISCKASSLARDLVT 422

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +    +++E+    D FP T ++E  VLL +
Sbjct: 423 IQDMGYSVEKACCVDMFPMTGNVETVVLLSK 453


>gi|194445322|ref|YP_002042208.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194403985|gb|ACF64207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 431

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|168231048|ref|ZP_02656106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471802|ref|ZP_03077786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458166|gb|EDX47005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205334540|gb|EDZ21304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 431

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALINAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|168242718|ref|ZP_02667650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194447436|ref|YP_002046926.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|238909737|ref|ZP_04653574.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|194405740|gb|ACF65959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205338177|gb|EDZ24941.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 431

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|242278181|ref|YP_002990310.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM
           2638]
 gi|242121075|gb|ACS78771.1| RNA methyltransferase, TrmA family [Desulfovibrio salexigens DSM
           2638]
          Length = 465

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 155/392 (39%), Gaps = 42/392 (10%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSE-PIHYRMRAEFHIW 52
            G L  D +Y  Q   K  ++ + +               +   S     YR + EF   
Sbjct: 85  GGCLHQDIKYPAQTFWKGRQVCETLERIGKIGPDTPGMGEEALPSPLEYGYRNKMEFSFH 144

Query: 53  HDGDDLYHIMFDQQTKERMR----IDYFMPGSLLINALMIEMMATIRLEPLL-------R 101
             GD L      + ++  +               I AL+ +  A   +           R
Sbjct: 145 GIGDSLKLGFKRRGSETDVLNISSCPLLPEQCADIPALVRDYCAHTNIGAYRHNRGGYWR 204

Query: 102 AKLFQIDYLTSQSDQAIVT---LIYH--RLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
             + +  + + +    ++T     +H  + L     +   +L+  +H+ +     +    
Sbjct: 205 KLVVRFSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDNIPQLKSFVHSTRKGRADLATGE 264

Query: 157 KTKICLDRDYVDERLTVAG-RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-L 214
           +      ++++ E LT A    + YR   N+F Q N+     +             D+  
Sbjct: 265 RLISVTGQEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRKSSELAAPKADDVVW 324

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG+G   + +A+   +++ +E+++ SV++A+ N A N + N + +  +         
Sbjct: 325 DLFCGSGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQYIVGN--------- 375

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYP-HILYISCNPDSLCRDL 332
                   K +         + VDPPRSG+ D +   +++  P  ILYISCNP +L RD 
Sbjct: 376 ----LASEKGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTLARDA 431

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + +   + +ER A  D FP+T H+E   LL +
Sbjct: 432 AKMEGRYKLERFAAVDMFPHTAHVESIALLTK 463


>gi|157148321|ref|YP_001455640.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|226725378|sp|A8ANZ1|RUMA_CITK8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|157085526|gb|ABV15204.1| hypothetical protein CKO_04138 [Citrobacter koseri ATCC BAA-895]
          Length = 432

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 137/357 (38%), Gaps = 30/357 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70
           Q   K   L ++M   +    ++    P  YR RA   + +      L        + + 
Sbjct: 100 QQRSKSAALSRLM---KCDVAEVIADTPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+  + A +      R   F    L    +  ++ L +   L+  
Sbjct: 157 VDVRQCPILVPQLEALLPRVRACLESLQGNRH--FGHVELVQAGNGTLMVLRHTAPLNAT 214

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            RE   R     H+    + L  +++  +         E        L        F Q 
Sbjct: 215 DREKLERFS---HSEGLSLFLAPQSDILEPLTG-----EAPWYDSNGLRLTFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N G+N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R 
Sbjct: 267 NEGVNQKMVARALEWLDIQPDDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRE 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N + NV     + +E             +         F  I +DP R+G      
Sbjct: 327 NARRNGLQNVTFFHENLEE------------DVTKQQWAKNGFDKILLDPARAGAAGVMK 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +++  P  I+Y+SCNP +L RD  ++L+  + I+RLA+ D FP+T H+E  VL  R
Sbjct: 375 HIIKLKPIRIVYVSCNPATLARDSDALLNAGYQIQRLAMLDMFPHTGHLESMVLFER 431


>gi|309803238|ref|ZP_07697335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164746|gb|EFO66996.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus iners
           LactinV 11V1-d]
          Length = 361

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 145/375 (38%), Gaps = 40/375 (10%)

Query: 16  EKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
            K + ++  +L F   N Q       I   +  +YR +A++ I    + +   M+  +++
Sbjct: 3   FKKELIKDSLLKFHPRNYQKIKIKNTIPAPKQWYYRNKAQYQIESIKNKISLGMYAPKSQ 62

Query: 69  ERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           + + +      S            LI  + I +  +   +  ++  + +  + T +    
Sbjct: 63  KIIDLPIMPTQSKNTQKVEFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHATDEIQVT 122

Query: 118 IVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           +VT+  +    D   E  I L + +            +   NKT   + ++Y+ E++   
Sbjct: 123 LVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYITEQILNK 182

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233
                +     +F Q N      +    L   +     +L + Y G G   ++ +    +
Sbjct: 183 ----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGTLGILASEKVKQ 238

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E    ++  A++N   N+V N + +  S ++    M+++                 
Sbjct: 239 VIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------------GIAID 286

Query: 294 TIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + VDPPR+GL+   V  +        +YISCNP +L RDL +LS  + +  +   D  P
Sbjct: 287 ALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQPVDMMP 346

Query: 352 YTRHMECGVLLVRKP 366
            T   E    LV + 
Sbjct: 347 QTPRWEGIAKLVLRK 361


>gi|86143081|ref|ZP_01061503.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217]
 gi|85830526|gb|EAQ48985.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217]
          Length = 457

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 136/403 (33%), Gaps = 56/403 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPNLQIFRSEP--IHYRMRAEFHIW---- 52
                   Y+ QL  K   +    Q +    +P++           YR + EF       
Sbjct: 72  GCKWQNMHYDYQLEYKQREVVNNLQRLGKIDLPDITPISGSKDIYFYRNKMEFSFSDSKW 131

Query: 53  -----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEM 90
                       +  +           + + ID         NA+            I  
Sbjct: 132 LTLKQIQSDEIIEDRNALGFHIPGMWDKILDIDKCHLQRDPSNAIRNGVKEFATKNNIPF 191

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
                 E LLR  + +    TS + + +V + +    +   +     L++        + 
Sbjct: 192 FNARNQEGLLRTLMIR----TSSTGELMVLVQFFEDAEAQRKLVLEYLKETFPEITSLLY 247

Query: 151 LIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
           +I          D+D +     + +      L ++    SF Q N+      L  +    
Sbjct: 248 VIN-EKGNDTIYDQDIICYAGRDHIFEEMEGLKFKINAKSFYQTNSEQAYE-LYKITRDF 305

Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             ++GD  + +LY G G  +  +A+   +V+ VE    ++ AA+ N   N + NV+    
Sbjct: 306 AELKGDETVFDLYTGTGTIAQFVAKKAKKVIGVEAVPDAIIAAKENAQLNEIENVEFYVG 365

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYIS 322
             K                       +   +  DPPR G+    V  +       I+Y+S
Sbjct: 366 DMKNVFND-----------AFIAQHGQPDVVITDPPRDGMHKDVVAQLIKIKADRIVYVS 414

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           CN  +  RDL++L   + +ER+   D FP T H+E  VLL  K
Sbjct: 415 CNSATQARDLALLDPYYKVERVQPVDMFPQTHHVENVVLLKLK 457


>gi|288933811|ref|YP_003437870.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22]
 gi|288888540|gb|ADC56858.1| RNA methyltransferase, TrmA family [Klebsiella variicola At-22]
          Length = 434

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 138/358 (38%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KER 70
           Q   K   L ++M        ++    P  YR RA   + +        M  +Q   K  
Sbjct: 100 QQQSKRAALARLMKR---EVDEVIAGMPWGYRRRARLSLNYQPKTQQLQMGFRQANAKAI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +      +  + AL+  +   +     LR  L  ++ + + +   +V  + H     A
Sbjct: 157 VDVVQCPVLAPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV--LRHTAALPA 213

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                 +L          + L  ++   +         E        L        F Q 
Sbjct: 214 G--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLRLVFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N G+N  M+   L        D +L+L+CG GNF+L LA    +V+ VE     VE  R 
Sbjct: 267 NDGVNQQMVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAQVVGVEGVPALVEKGRE 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N A N ++NV     + +E                     + F  + +DP R+G      
Sbjct: 327 NAALNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLDPARAGAPGVMP 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +++  P  ++Y+SCNP +L RD   +L   + I+RLA+ D FP+T H+E  VL  R+
Sbjct: 375 HIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLESMVLFERR 432


>gi|323491189|ref|ZP_08096375.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio brasiliensis LMG
           20546]
 gi|323314557|gb|EGA67635.1| 23S rRNA m(5)U1939 methyltransferase [Vibrio brasiliensis LMG
           20546]
          Length = 439

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58
              +     + Q   K   L Q+M  F   ++++      +   YR RA   I  +    
Sbjct: 90  GCNMQHLSSDAQQEYKQQTLSQLMSKFAGQSIELDSPIIGDDKGYRRRARVSIKLNKKTR 149

Query: 59  Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                   + +KE + + +       ++AL+  +   ++     +  L  ++ +   + +
Sbjct: 150 QLEFGFRKKNSKEIVNVTHCPVLDAELDALLKPLYQLLQQF-SNQENLGHVELVKGDNTK 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            IV     R L     +    L       +  + L+  +++    +           AG 
Sbjct: 209 VIVL----RHLKALKPQDQQALESFAQQHQATLYLMPESDQLNRVVGESA---HYLEAGA 261

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
           T+ +    N+F Q N  +N  M+E  L+  +  + D +L+L+CG GNFSL +A+    V 
Sbjct: 262 TIPFE--PNNFIQVNQKVNQAMVEQALSWLQLTKQDRVLDLFCGLGNFSLPIAKQVTSVT 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     VE A YN   N + N    + + +E                    + +F  I
Sbjct: 320 GVEGVDAMVEKATYNAKVNQIENASFYQANLEEDVSGQL------------WAAEKFDKI 367

Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
            +DP R+G       +       ++Y+SCNP +L RD  S+LS  + +++L + D FP+T
Sbjct: 368 LLDPARAGASGIIEQISALGASRVVYVSCNPATLARDSQSLLSQGYKLQKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L V+
Sbjct: 428 SHLESMALFVK 438


>gi|262038379|ref|ZP_06011756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia
           goodfellowii F0264]
 gi|261747597|gb|EEY35059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia
           goodfellowii F0264]
          Length = 466

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 65/395 (16%), Positives = 154/395 (38%), Gaps = 46/395 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
                + +YE+QL  K + L++++      N++       I      +YR +    ++  
Sbjct: 87  GCDFGMLKYEKQLEYKNEMLKEVLEKIGEINIENIELESIIGSDIKTNYRNKTAEPVFKK 146

Query: 55  GDDLYHIMFDQQTKERMRIDYFM----PGSLLINALMIEMMA--------TIRLEPLLRA 102
              +    + +++ +       +        +IN  + E+ +         +  E     
Sbjct: 147 DGKIMTGFYSKKSHDTFSASESLLKSKIAEDIINKFLKEINSFSGTKNEFKVYNEITNTG 206

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRL--------LDDAWRECAIRLRDALHARKYQIQLIGR 154
            L  +    ++ ++ ++ +   +         + +   E    L+    + K +   +  
Sbjct: 207 FLKHVIVRNNEKNEVMLIITVSKKSQYKQLVKVLEKLYEENESLKSVYISVKKEANNVIL 266

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDL 213
             +T+  L  +Y    L      + ++   +SF Q N    + + +  +    + +   +
Sbjct: 267 GEETRHLLGNEY----LEEEIEEIRFKIYPDSFFQINKSQAIKLYDKAIEFLGESVHKTV 322

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++ + G G  ++ L+    + + +E  + SV AA      N++ NV+ ++   +     +
Sbjct: 323 IDAFSGTGTIAMALSSKVKKAIGIESVESSVIAANQTAEENNIKNVEFIKGKVERVLPDV 382

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRD 331
            ++                + I  DPPR G+D+  +   +    P I+YISCNP +  RD
Sbjct: 383 LKK-----------EGNSVEAIIFDPPRRGIDEKALKSSVKNKIPKIVYISCNPSTFARD 431

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +L    +T+++++  D FP   H+E   LL RK
Sbjct: 432 CKLLMENGYTLKKVSAVDMFPQVNHIEIVGLLERK 466


>gi|168463892|ref|ZP_02697809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195633311|gb|EDX51725.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
          Length = 431

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|322614234|gb|EFY11166.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620952|gb|EFY17810.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624015|gb|EFY20849.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628246|gb|EFY25035.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633365|gb|EFY30107.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636058|gb|EFY32766.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639394|gb|EFY36082.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643744|gb|EFY40295.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648856|gb|EFY45303.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655151|gb|EFY51461.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658018|gb|EFY54286.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664119|gb|EFY60318.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667088|gb|EFY63260.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673136|gb|EFY69243.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677873|gb|EFY73936.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681047|gb|EFY77080.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322685644|gb|EFY81638.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194783|gb|EFZ79970.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196534|gb|EFZ81682.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323205053|gb|EFZ90036.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207746|gb|EFZ92692.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212702|gb|EFZ97519.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323214815|gb|EFZ99563.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222544|gb|EGA06909.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226424|gb|EGA10632.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230697|gb|EGA14815.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234952|gb|EGA19038.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238991|gb|EGA23041.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244651|gb|EGA28657.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247267|gb|EGA31233.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251799|gb|EGA35664.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257486|gb|EGA41176.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263271|gb|EGA46808.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267523|gb|EGA51007.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272712|gb|EGA56118.1| 23S rRNA m(5)U1939 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 431

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPRLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|268319868|ref|YP_003293524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           johnsonii FI9785]
 gi|262398243|emb|CAX67257.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           johnsonii FI9785]
          Length = 459

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 134/387 (34%), Gaps = 40/387 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y +QL  K   + + +  +   +         I      +YR +A++ I  +   
Sbjct: 88  LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPAPNAWNYRNKAQYQIEFNKGK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               ++   ++  + +      +            LI+ L I +    R    ++    +
Sbjct: 148 SKLGLYAPNSRRLIDLPDMPTQTKGTQKVEREIKKLIDKLHIRIADFRRHTDGIKTIAVR 207

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
               T +    ++T+              ++L + +                NKT     
Sbjct: 208 QSNATGEIQVTLITIGKKIKDLKLLASHIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           + ++ E +        ++    +F Q N      +    L          L++ Y G G 
Sbjct: 268 KSHITEEILGK----KFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++             L
Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL------------L 371

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL    +  +        +Y+SCNP +L +DL +LS  + 
Sbjct: 372 PELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSEAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +   D  P T   E    LV + +
Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRKN 458


>gi|206576756|ref|YP_002236864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           342]
 gi|226725382|sp|B5XV15|RUMA_KLEP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|206565814|gb|ACI07590.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           342]
          Length = 434

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 137/358 (38%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KER 70
           Q   K   L ++M        ++    P  YR RA   + +        M  +Q   K  
Sbjct: 100 QQQSKRAALARLMKR---EVDEVIAGVPWGYRRRARLSLNYQPKTQQLQMGFRQANAKAI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +      +  + AL+  +   +     LR  L  ++ + + +   +V  + H     A
Sbjct: 157 VDVVQCPVLAPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV--LRHTAALPA 213

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                 +L          + L  ++   +         E        L        F Q 
Sbjct: 214 G--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLRLVFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N G+N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R 
Sbjct: 267 NDGVNQQMVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRE 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N A N ++NV     + +E                     + F  + +DP R+G      
Sbjct: 327 NAALNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLDPARAGAPGVMP 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +++  P  ++Y+SCNP +L RD   +L   + I+RLA+ D FP+T H+E  VL  R+
Sbjct: 375 HIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLESMVLFERR 432


>gi|225848202|ref|YP_002728365.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643068|gb|ACN98118.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 420

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 156/371 (42%), Gaps = 33/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDL 58
                   YE+Q+  K + L+  +L     +L I   + S+P +YR++ +F      D  
Sbjct: 74  GCDFQHIPYEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQFKF----DGK 129

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
               + Q + + + IDY        N ++  +   +    L  +   Q+   ++  +Q +
Sbjct: 130 NFGFYRQNSNQVIDIDYCYLLKEDFNQIIHPLKKFLFKYALSPS---QVIVFSNSKNQKL 186

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +  ++      A     I +         +        K ++ L    + E +       
Sbjct: 187 IKFVFPDNSQIANIIPKIEIYKDEIDENIKGIGFYDKKKRQLLLGEYVIFETV----DNY 242

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAV 237
            YR   +SF Q N     ++++ V+   K       ++ YCG G FS+ LA +   VL +
Sbjct: 243 KYRVSMDSFFQVNIYQIKNLIDLVVQEVKDKGYKRAVDFYCGVGTFSVPLANYVREVLGI 302

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E  + +V+ A+ N+  N++ N+K ++  +++  +                  ++ + +  
Sbjct: 303 ESNEEAVKDAKTNVRHNNLKNLKFLKAKTEKGLKY--------------AKDFKPEVVVF 348

Query: 298 DPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           DPPRSGL+      +  +++   I+YISCNP +L RDL           ++++ D FP T
Sbjct: 349 DPPRSGLNKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKVSMVDMFPQT 408

Query: 354 RHMECGVLLVR 364
            H+E  V+L +
Sbjct: 409 HHIESVVVLEK 419


>gi|148981901|ref|ZP_01816559.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
 gi|145960702|gb|EDK26044.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrionales bacterium
           SWAT-3]
          Length = 439

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 143/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58
              L    Y+ Q+  K   L  +M  ++    ++ +    +   YR RA   ++ D    
Sbjct: 90  GCHLQHLGYQSQIEHKAQSLTHLMSQYKTDETEMAQPIVGDETGYRRRARISLFVD-KKT 148

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK--LFQIDYLTSQSDQ 116
           + + F  + K+  +I+     ++L   L + +     L         L  ++ +   +  
Sbjct: 149 HKLQFGFRKKQSKQIENITDCAVLEPRLNVLLPKVKNLLNTFSNLTSLGHVELVLGDTGP 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +V     R L          L          +  +   +K    +         +  G 
Sbjct: 209 VMVL----RHLKPLIERDEQALIALAKEEGAILYSMPETDKLVRLVGDA---PSYSETGV 261

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
           TL +    N F Q N  +N  M+   +   +    + +L+L+CG GNFSL +A+    V+
Sbjct: 262 TLPFE--PNHFIQVNQKVNQQMVAQAIEWLEPKADERVLDLFCGLGNFSLPIAQQSAFVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     V+ A  N   N ++N +  + + +E   A    +E            +F  I
Sbjct: 320 GVEGVDEMVQQATSNAQLNQLSNTEFYQANLEEDLSAQAWAKE------------KFDKI 367

Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
            +DP R+G       +       ++Y+SCNP +L RD   L    + + +L + D FP+T
Sbjct: 368 LLDPARAGASGVVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L ++
Sbjct: 428 SHLESMALFIK 438


>gi|143581977|sp|Q0HL77|RUMA_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 449

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 34/376 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56
              L       Q   K   L  +M  F       +     E  HYR RA      D    
Sbjct: 91  GCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTK 150

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L        + + + ID  +  +  ++ L I   A +  +   ++ L  ++ + + +  
Sbjct: 151 QLSLGFRASSSNQVVPIDSCLVLAKPLSDL-IAPFAKLLNQLAAKSSLGHLELIDADNGH 209

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170
             V  I   L D    +   +L       +  I L          N T +      +D++
Sbjct: 210 FAVIRITKSLND----KDMAKLAQFAEHHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDK 265

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
                 +L +     +F Q NA IN  M+   L       G+ +L+L+CG GNFSL LA+
Sbjct: 266 AGATPVSLTF--TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAK 323

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     V  AR N AAN ++N+          +  +  E    ++       
Sbjct: 324 LGAEVIGVEGVPDMVSQARENAAANGLSNLTFYHGD---LSADLSCEPWMGKI------- 373

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347
                + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L 
Sbjct: 374 ---DKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 430

Query: 348 DQFPYTRHMECGVLLV 363
           D FP T H+E   L  
Sbjct: 431 DMFPQTHHIEAMALFE 446


>gi|117919559|ref|YP_868751.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. ANA-3]
 gi|143581951|sp|A0KU76|RUMA_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|117611891|gb|ABK47345.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. ANA-3]
          Length = 449

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 34/376 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56
              L       Q   K   L  +M  F       +     E  HYR RA      D    
Sbjct: 91  GCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTK 150

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L        + + + ID  +  +  +  L I   A +  +   ++ L  ++ + + +  
Sbjct: 151 QLSLGFRASSSNQVVPIDSCLVLAKPLADL-IAPFAKLLNQLAAKSSLGHVELIDADNGH 209

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170
             V  I  + L+D   +   +L       +  I L          N T +      +D+ 
Sbjct: 210 FAVIRI-TKPLND---KDMAKLAQFAEQHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDN 265

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
                 +L +     +F Q NA IN  M+   L       G+ +L+L+CG GNFSL LA+
Sbjct: 266 ADATPVSLTF--TPGNFVQVNAQINKTMVAQALEWLAPQPGERILDLFCGMGNFSLPLAK 323

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     V  AR N AAN ++N+          +  +  E    ++       
Sbjct: 324 LGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGD---LSADLSCEPWMGKI------- 373

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347
                + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L 
Sbjct: 374 ---DKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 430

Query: 348 DQFPYTRHMECGVLLV 363
           D FP T H+E   L  
Sbjct: 431 DMFPQTHHIEAMALFE 446


>gi|313206559|ref|YP_004045736.1| 23S rRNA m(5)u-1939 methyltransferase [Riemerella anatipestifer DSM
           15868]
 gi|312445875|gb|ADQ82230.1| 23S rRNA m(5)U-1939 methyltransferase [Riemerella anatipestifer DSM
           15868]
          Length = 469

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 130/389 (33%), Gaps = 44/389 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHI----WHDGDDLY 59
            YE+QL  K   +   +              +   +   YR + EF      W   +++ 
Sbjct: 91  SYEKQLEFKQSEVLNNLKRIGGLTDFEALPILGSPQEYFYRNKMEFSFSNARWLTSEEIL 150

Query: 60  HIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LR 101
           +                   + + +          N + + +        L         
Sbjct: 151 NGADIDNKNALGFHIPGMWSKILDLKECFLQETPSNEIRLAVKNYADANQLEFFDVKNQE 210

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             L  +    +   + +V   +++   +        L +     K  +  I       I 
Sbjct: 211 GFLRTLMLRQNSKGEWMVLFQFYKEQKEDREALFEYLLNTFPQIKTLVYAINPKPNDSIY 270

Query: 162 ---LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELY 217
              ++  Y D  L      L ++    SF Q N    + + +  L        +++ +LY
Sbjct: 271 DLEVETYYGDGFLIEEMEDLQFKIGPKSFFQTNYQQALALYQKTLEFADLKGDEVVYDLY 330

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G  +  +AR   +V+ +E    ++ AA+ +   N ++N        K+         
Sbjct: 331 TGTGTIAQFVARKAKQVIGIESVPEAIAAAKEHAKHNGLDNCTFYCGDMKDIFTD----- 385

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                 +      +   +  DPPR G+    V  +   A   I+Y+SCN  +  RDL+++
Sbjct: 386 ------EFLAQHPKADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSCNSATQARDLALM 439

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
              + +E++   D FP T H+E   LL +
Sbjct: 440 KEHYRVEKILPVDMFPQTHHIENIALLKK 468


>gi|270160130|ref|ZP_06188786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Legionella longbeachae
           D-4968]
 gi|289165093|ref|YP_003455231.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Legionella longbeachae
           NSW150]
 gi|269988469|gb|EEZ94724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Legionella longbeachae
           D-4968]
 gi|288858266|emb|CBJ12134.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Legionella longbeachae
           NSW150]
          Length = 444

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 153/377 (40%), Gaps = 32/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L     E+Q+  K D+L  ++  +     Q   S       +YR +A   + +    
Sbjct: 85  GCSLQHLSQEEQIHFKQDQLLDLLSRYGHTKPQTVLSPLVANYWNYRNKARLSVRYVEKK 144

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--RAKLFQIDYLTSQSD 115
              ++  ++      I       +L   L  ++M    L   +  +  + QI+      +
Sbjct: 145 QATMIGFRERNNPRYITEITQCPVLNAKLDSDIMPLRHLIDSMDNKYCIAQIEVAAGDDE 204

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL----DRDYVDERL 171
            A++     R L     E  ++L+       Y+I L     ++  C       +Y+   L
Sbjct: 205 IALI----FRNLTPLTAEDELKLKKFAEEYHYKIYLQPGGPESIYCFYPADSNEYLAYHL 260

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230
                +  +      FTQ N+ +N  M+   L        D +L+L+CG GNFSL +A+ 
Sbjct: 261 PDFQISFAFH--PTDFTQINSMLNQSMVALALQLMDLKSTDIVLDLFCGLGNFSLPMAKF 318

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +VL VE +K  VE A  N   NH++NV+    +  +           N +K +     
Sbjct: 319 CSKVLGVEGSKTMVERASMNAKKNHLSNVEFYAANLDDV----------NEVKKLVQQP- 367

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALF 347
               + +DPPRSG  +    +    P  I+Y+SCNP +L RD  IL     + + +  + 
Sbjct: 368 -CNKVLIDPPRSGALEIVKQIDLLNPERIVYVSCNPITLARDTDILVNQKNYILIKAGVM 426

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H+E   +  +
Sbjct: 427 DMFPHTAHVESIAMFEK 443


>gi|113969454|ref|YP_733247.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. MR-4]
 gi|113884138|gb|ABI38190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp. MR-4]
          Length = 463

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 145/376 (38%), Gaps = 34/376 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56
              L       Q   K   L  +M  F       +     E  HYR RA      D    
Sbjct: 105 GCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTK 164

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L        + + + ID  +  +  ++ L I   A +  +   ++ L  ++ + + +  
Sbjct: 165 QLSLGFRASSSNQVVPIDSCLVLAKPLSDL-IAPFAKLLNQLAAKSSLGHLELIDADNGH 223

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170
             V  I   L D    +   +L       +  I L          N T +      +D++
Sbjct: 224 FAVIRITKSLND----KDMAKLAQFAEHHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDK 279

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
                 +L +     +F Q NA IN  M+   L       G+ +L+L+CG GNFSL LA+
Sbjct: 280 AGATPVSLTF--TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAK 337

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     V  AR N AAN ++N+          +  +  E    ++       
Sbjct: 338 LGAEVIGVEGVPDMVSQARENAAANGLSNLTFYHGD---LSADLSCEPWMGKI------- 387

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347
                + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L 
Sbjct: 388 ---DKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 444

Query: 348 DQFPYTRHMECGVLLV 363
           D FP T H+E   L  
Sbjct: 445 DMFPQTHHIEAMALFE 460


>gi|325106371|ref|YP_004276025.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM
           12145]
 gi|324975219|gb|ADY54203.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM
           12145]
          Length = 465

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 146/399 (36%), Gaps = 47/399 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPI-HYRMRAEFHI----W 52
                   Y+ QL  K   +   +       ++    I  S    +YR + E+      W
Sbjct: 80  GCKWQHMDYKAQLKYKQKSVVDALQRLGGVEVEHAEDILPSNETVYYRNKLEYTFSNKRW 139

Query: 53  HDGDDLYHI----MFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99
              +D+       M            + + +++    +   N +   +        +   
Sbjct: 140 LTNEDIASGLDKEMNALGFHVPLRFDKILDVEHCYLQADPSNDIRNSIRVFALENDISFY 199

Query: 100 -LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
            LRA    L  +   TS + +++V +++    +         +          + ++ + 
Sbjct: 200 DLRAHEGALRNLIIRTSSTGESMVIVVFAYPEEGEINLLMDYVDKTFPQITSLLYIVNQ- 258

Query: 156 NKTKICLDRDYVDER----LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            K     D+D +  R    +      L +R    SF Q N+      L  +     G+ G
Sbjct: 259 KKNDTIFDQDVITYRGNPFIYEEMEGLKFRVGPKSFYQTNSLQAYE-LYKITREFAGLSG 317

Query: 212 D--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G  +  +AR    V+ VE    ++E A+ N A N++ N K      K+ 
Sbjct: 318 NELVYDLYTGTGTIANFVARQAREVVGVEYVPSAIEDAKVNSAINNIPNTKFYAGDMKDV 377

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
             A           +      +   +  DPPR+G+    V  +       ++Y+SCN  +
Sbjct: 378 LSA-----------EFIAEHGKPDVVITDPPRAGMHADVVARLMDMEAEKVVYVSCNAAT 426

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             RDL+IL   + + R+   D FP+T+H+E  VLL  + 
Sbjct: 427 QARDLAILKDKYDVARIKPVDMFPHTQHVENVVLLKLRK 465


>gi|168215741|ref|ZP_02641366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens NCTC 8239]
 gi|182382137|gb|EDT79616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens NCTC 8239]
          Length = 451

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 147/395 (37%), Gaps = 53/395 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEP--IHYRMRAEFHIWHD--- 54
             +     YE+QL  KV++++ +      Q        + P    YR + E+    +   
Sbjct: 79  GCSSQTIPYEKQLELKVEQVKDLFKEAEVQTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103
           G+    +    ++   + +D  +        I    ++            +     LR  
Sbjct: 139 GELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154
           + +      ++++ +V L+    +D    E            +L+  +H     +     
Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTELIKGLNLKGKLKSIIHTESDALSEAVI 255

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
             K  I    D++ E L      L ++    SF Q N+     +   V          ++
Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + +
Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
           +                +   I +DPPRSG+    +  V  +  P I+Y+SCNP +L  D
Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L +L    + IE+  L D FP T H+E  V L +K
Sbjct: 417 LKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNKK 451


>gi|152971649|ref|YP_001336758.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238896246|ref|YP_002920982.1| 23S rRNA 5-methyluridine methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|226725383|sp|A6TD57|RUMA_KLEP7 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|150956498|gb|ABR78528.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238548564|dbj|BAH64915.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 434

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 135/369 (36%), Gaps = 30/369 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
                      Q   K   L ++M         +    P  YR RA   + +        
Sbjct: 89  GCQQQHASVPLQQQSKRAALGRLMKR---EVDDVIAGAPWGYRRRARLSLNYQPKTQQLQ 145

Query: 62  MFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           M  +Q   K  + +         + AL+  +   +     LR  L  ++ + + +   +V
Sbjct: 146 MGFRQANAKAIVDVVQCPVLVPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
             + H     A      +L          + L  ++   +         E        L 
Sbjct: 205 --LRHTAALPAT--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q N G+N  M+   L        D +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LVFSPRDFIQVNDGVNQQMVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  R N A N ++NV     + +E                     + F  + +D
Sbjct: 316 GVPALVEKGRENAARNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  ++Y+SCNP +L RD   +L   + I+RLA+ D FP+T H+
Sbjct: 364 PARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHL 423

Query: 357 ECGVLLVRK 365
           E  VL  R+
Sbjct: 424 ESMVLFERR 432


>gi|325280541|ref|YP_004253083.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM
           20712]
 gi|324312350|gb|ADY32903.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM
           20712]
          Length = 477

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 143/398 (35%), Gaps = 60/398 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            YE+QL  K   +   +       LQ     I  +  ++YR + EF   +        + 
Sbjct: 89  PYEKQLEFKQQEINDNLQRIGKIKLQNVYPIIGSARQLYYRNKLEFTFSNKRFLTREEIS 148

Query: 64  DQQTKER---------------MRIDYFMPGSLLINALM-----------IEMMATIRLE 97
            +   ER               + ID+        N +            +        +
Sbjct: 149 READIERTPALGFHVPGLFDKVVDIDHCCLQGSSSNEIRNFIKTYALKKGLSFYDIRAQQ 208

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-- 155
             LR  + +    T+ + + +V L +      A  +    L          + +I     
Sbjct: 209 GFLRTLIIR----TASTGEIMVILAFGHEDTGAREQLLETLVRQFPQITSLMYVINEKLN 264

Query: 156 ----NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209
               ++   C   RD++ E +      L ++    SF Q N+    ++       A    
Sbjct: 265 DNLTDQDMFCFHGRDHIFEEM----EGLKFKIGPKSFYQTNSEQAYNLYSKTRELAGLTG 320

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  + +LY G G  +  +AR   +V+ +E    ++E A+ N A NH++N        K+ 
Sbjct: 321 QETVYDLYTGTGTIANFIARQARKVIGIEYVPEAIEDAKVNSAINHIDNTIFYAGDMKDV 380

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
             A                  +   I  DPPR+G+    V  +   +   I+Y+SCN  +
Sbjct: 381 LNA-----------SFISKHGQPDIIITDPPRAGMHPDVVQTILQASPERIVYVSCNSAT 429

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL ++ + + +  +   D FP+T H+E  VLL ++
Sbjct: 430 QARDLQMMDSAYEVIAVQPVDMFPHTHHVENIVLLRKR 467


>gi|158521596|ref|YP_001529466.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158510422|gb|ABW67389.1| RNA methyltransferase, TrmA family [Desulfococcus oleovorans Hxd3]
          Length = 471

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 86/402 (21%), Positives = 150/402 (37%), Gaps = 58/402 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIW---- 52
              L I  Y++QL  K +++   +        VP   +  ++P   YR + EF       
Sbjct: 89  GCRLQILDYDKQLDCKHEQVADALRHIGLVENVPVHPVMPADPVWGYRNKMEFSFADRRW 148

Query: 53  ----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-- 100
                      D      +       + + +D  +      NA++ ++ A  R   +   
Sbjct: 149 LLPEEMEMENIDTSFALGLHVPGTFHKVIDVDACLLLPEPGNAILGDVRAYARASGVPAY 208

Query: 101 ---------RAKLFQIDYLTSQSDQAIVTLIYHR----LLDDAWRECAIRLRDALHARKY 147
                    R  + +           IVT    R     L D   +    +   ++    
Sbjct: 209 GLKSHQGFWRFLMLRHSVAHDNWMVNIVTAAEDRRLLQPLADLLADRYPEVVSVVNNITA 268

Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           +   + +     +     ++ +RL        +    NSF Q N       L  V     
Sbjct: 269 RKAGVAQGEYEILLHGAPFISDRLGR----FSFDISANSFFQTNTRGAER-LYTVAREYA 323

Query: 208 GIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+ G   +++LYCG G  ++ L+     V+ +EI    +  A  N   N+V+NV+ V   
Sbjct: 324 GLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDSCLADAVNNCRTNNVSNVRFVAGD 383

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISC 323
            KE    +                 R   + +DPPR+G+    V  V A   P I+Y+SC
Sbjct: 384 VKETLPRL---------------DCRADVLVIDPPRAGMHKDVVEQVLAMAPPRIVYVSC 428

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +L RD+++LS  +T+  +   D FP+T H+EC   L +K
Sbjct: 429 NPATLARDVAMLSEAYTVAEVQPVDMFPHTPHIECVARLDKK 470


>gi|290511109|ref|ZP_06550478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55]
 gi|289776102|gb|EFD84101.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. 1_1_55]
          Length = 434

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 136/358 (37%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KER 70
           Q   K   L ++M        ++    P  YR RA   + +        M  +Q   K  
Sbjct: 100 QQQSKRAALARLMKR---EVDEVIAGVPWGYRRRARLSLNYQPKTQQLQMGFRQANAKAI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+  +   +     LR  L  ++ + + +   +V  + H     A
Sbjct: 157 VDVVQCPVLVPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV--LRHTAALPA 213

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                 +L          + L  ++   +         E        L        F Q 
Sbjct: 214 G--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLRLVFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N G+N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R 
Sbjct: 267 NDGVNQQMVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRE 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N A N ++NV     + +E                     + F  + +DP R+G      
Sbjct: 327 NAALNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLDPARAGAPGVMP 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +++  P  ++Y+SCNP +L RD   +L   + I+RLA+ D FP+T H+E  VL  R+
Sbjct: 375 HIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLESMVLFERR 432


>gi|330997901|ref|ZP_08321735.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569505|gb|EGG51275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella
           xylaniphila YIT 11841]
          Length = 491

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 142/401 (35%), Gaps = 56/401 (13%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIW------ 52
            L    Y++QL  K  ++   +              +   +   YR + EF         
Sbjct: 107 CLP---YKEQLKYKQQQVLDNLTRIGKVELNGVQPILGSVKTEEYRNKLEFGFSNKRWLT 163

Query: 53  -----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL- 100
                       +G   +H        + + I+       + N +   +        L  
Sbjct: 164 PEEIASGNAYPQNGAVGFHTCGSFD--KILPIEQCRLMDDINNRIRNAIRDYGYEHRLTF 221

Query: 101 -----RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
                 A L +   + + +   ++ L+   + +D  +  A  L   L     +I  +   
Sbjct: 222 HDQREHAGLLRNMMIRNSNTGELMLLMQFCITNDTEKAQAEALMGYLAETFPEITSLLYV 281

Query: 156 NKTK---ICLDRDYVD----ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
           N  K      D D +     + + +    L ++    SF Q N       L  V     G
Sbjct: 282 NNLKYNDTIGDLDVITFRGNDHIYLQMENLRFKVGPKSFYQTNTDQAYE-LYKVARDFAG 340

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + G   + +LY G G  +  +A    +V+ +E    ++E A+ N   N + N        
Sbjct: 341 LTGTELVYDLYTGTGTIANFVAGKARKVIGIEYVPEAIEDAKINSQINGIGNTLFFAGDM 400

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCN 324
           K+              K+      +   I  DPPR+G+    +  +   A   I+Y+SCN
Sbjct: 401 KDILN-----------KEFIAAHGQPDVIITDPPRAGMHKDVIETILFAAPHRIVYVSCN 449

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +  RDL++L + + I  +   D FP+T+H+E  V+L R+
Sbjct: 450 PATQARDLALLDSQYKIMGVRPVDMFPHTQHVENVVMLERR 490


>gi|257784455|ref|YP_003179672.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469]
 gi|257472962|gb|ACV51081.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469]
          Length = 441

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 135/372 (36%), Gaps = 34/372 (9%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           YEQQL EK + +   +             +    +   EP  YR + E     +G+    
Sbjct: 86  YEQQLVEKRNSVVSALERIGHFSPDDVSELVKDIVSPGEPWGYRNKIELAFKRNGNKTLV 145

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAIV 119
            M+    ++ +RI             +  +   +  L       + +I    S+  + + 
Sbjct: 146 GMYAPNGQDIVRIKDCPLLDKSNQKAVGAVSGALSYLSGSHELDVERIGIRVSRRTKELE 205

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTVAGRT 177
             ++         + A  L DA+ A      +    +K +  +   R       +     
Sbjct: 206 VALWTAPSGFPRAQVARVLSDAVKATSVVRVMTKGPSKARRVVGVERLSGSGSWSELIDG 265

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
              +    SF Q N      ++E VL+        + ++LYCG G F+L LA+    V A
Sbjct: 266 QKMQLSAPSFFQVNTKGAEKLVELVLSGLDVQPDDEAMDLYCGAGTFTLPLAKRAGFVSA 325

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE   P+V   R N+    ++NV  V   +                 D D        I 
Sbjct: 326 VEAYGPAVRDLRRNLELAKLDNVDAVGGDAG------------REFPDTDA-----DVII 368

Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST--THTIERLALFDQFPY 352
           VDPPR+GL    +  +   P   I Y+SC+P +L RDL       ++    +   D FP 
Sbjct: 369 VDPPRAGLAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSYKPVSVTPVDLFPQ 428

Query: 353 TRHMECGVLLVR 364
           T H+E   LL R
Sbjct: 429 TFHVENVCLLKR 440


>gi|163783831|ref|ZP_02178812.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880902|gb|EDP74425.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 408

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 147/370 (39%), Gaps = 42/370 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
                   YE+Q+  K + L + +      N      I  + P +YR R +F      D 
Sbjct: 73  GCDFQHINYEKQVEIKKEILEETLQRIGKINKDTDKVIPSANPFNYRNRVQFKF----DG 128

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                +  ++ E + I+        IN L+  +    +  P +  +L    +  ++    
Sbjct: 129 KNFGFYKLKSNEVVDIESCDIADKNINNLIPTLKNLAKNNPQVE-ELHIFHHPDNKPMLK 187

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           IV       L +        L D        I      NK      + +   R       
Sbjct: 188 IV-------LKENLFMNIENLLDTFAGIGVYI-----GNKRVKLEGKSFTFYR----AGK 231

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
             YR   +SF Q N     ++++ V++        + ++YCG G F+L  ++   +V  +
Sbjct: 232 FNYRVSIDSFFQVNKYQLENIVDEVISEIPKDSQCIGDIYCGVGLFTLPASKKAKKVFGI 291

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E +K +V+ A+YN+  +++ N K  +   ++                  I  Y   T+  
Sbjct: 292 EASKSAVKDAQYNVKVHNIGNAKFYQKVVEKSAD--------------IIFGYNPDTLIF 337

Query: 298 DPPRSGLDDATVG---MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
           DPPR+G+    +     +++   I+Y+SCNP +  RD+++LS    ++++ L D FP T 
Sbjct: 338 DPPRTGIPKNIIQKLLQLKSLKRIIYVSCNPSTASRDINLLSEKFELKKVKLIDMFPQTH 397

Query: 355 HMECGVLLVR 364
           H+E   +L +
Sbjct: 398 HIESIFVLDK 407


>gi|295426431|ref|ZP_06819081.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
           DSM 11664]
 gi|295063799|gb|EFG54757.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus amylolyticus
           DSM 11664]
          Length = 461

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 138/386 (35%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y +QL  K   + + +  F   N         I   +  HYR +A + I  D   
Sbjct: 92  LAHLSYAKQLEFKKANVIEALRKFHPRNYDKYKVKNTIPAPDQWHYRAKASYQIERDHGK 151

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQ 106
               ++   +   + +      S        ++   I    +           ++  + +
Sbjct: 152 NKLGLYAPNSHRLIDLPVMPTQSEGTQKTERDIKHLIEKNHVFIADRRKHLDGIKTIVVR 211

Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163
               T +    ++T+ +  + L +  +E      +                 NKT+  L 
Sbjct: 212 QSEATKEIQVTLITVGHKIKNLMNLAKEIMNLPNVVSVYQNETDWRNPQVWGNKTEKLLG 271

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           ++ + E +        +     +F Q N      +    L          L++ Y G G 
Sbjct: 272 KNQITEVILGK----KFELSPRAFFQLNPVQTETLYSEALKFLDLTPDQTLIDAYSGVGT 327

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +VE A++N+  NH+ N    + S ++             L
Sbjct: 328 LGILAADQVKQVVGIETIPEAVEDAKHNVQINHIKNADYFQGSVEKV------------L 375

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL  + +  +        +YISCNP +L +DL +L+ ++ 
Sbjct: 376 PELQKGGLPIDALIVDPPRTGLAKSLIKTLLRVKPQTFVYISCNPSTLAQDLILLTESYD 435

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   EC V LV + 
Sbjct: 436 VRLIENVDMLPQTPRCECVVKLVLRK 461


>gi|225011827|ref|ZP_03702265.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium
           MS024-2A]
 gi|225004330|gb|EEG42302.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium
           MS024-2A]
          Length = 471

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 144/400 (36%), Gaps = 53/400 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFR----SEPIHYRMRAEFHI----W 52
              L    YE QL  K   +   +      ++ ++        P +YR + EF      W
Sbjct: 84  GCKLQHLAYEGQLEFKEKGVLHNLNHIGKIDIKEVLPIARVENPYYYRNKMEFSFSNKRW 143

Query: 53  HDGDDLYHIMFDQQT----------KERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99
              +++      ++            + + ID+    +   NA+   + +    E L   
Sbjct: 144 LTSEEISGGAEIERNGLGFHKPGMWDKVVDIDHCHLQAEPSNAIRNAIRSFAIQEQLEFF 203

Query: 100 ----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
                +  L  +    +   + +V + + +   +        L++        +  +   
Sbjct: 204 DTREQQGFLRTLMIRNTLGGELMVLIQFFKEDQEKRELLLNFLKEKFPQITSLLYCVNSK 263

Query: 156 N-----KTKIC--LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                    I     +D++ E L      L ++    SF Q N      +L  +      
Sbjct: 264 GNDSLYDQNILCYYGQDFITEHLG----DLQFKITAKSFYQTNPKQAE-VLYSIGKDFAA 318

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           ++G+  + +LY G G  +L LA+   +++ VE    ++EAA  N   N + N        
Sbjct: 319 LKGNEIVYDLYTGTGTIALSLAKQCAKIIGVESVPEAIEAANENATFNKIKNATFEVGDM 378

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
           K+               D      + + +  DPPR+G+    V  +   A   I+YISCN
Sbjct: 379 KDCFND-----------DFIKRHGKAEVVITDPPRNGMHPDVVKQLLKLAPQRIVYISCN 427

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             +  RDL ++   +T+ +    D FP T H+E  VLL R
Sbjct: 428 SSTQARDLELMKGMYTVVKSQAVDMFPQTHHVENVVLLHR 467


>gi|188534844|ref|YP_001908641.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia tasmaniensis
           Et1/99]
 gi|226725381|sp|B2VFZ2|RUMA_ERWT9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|188029886|emb|CAO97770.1| 23S rRNA (uracil-5-)-methyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 438

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 84/361 (23%), Positives = 145/361 (40%), Gaps = 30/361 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL--YHIMFDQQT 67
           Q   K   L +++   +   ++   I  S P  YR RA   +         +    ++ +
Sbjct: 100 QQESKAKALSRLLSKPRGETVEVDDIIASRPWGYRRRARLGLSFQPKSQTLHMGFREKSS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            E + I         +NAL+  + A +     +R +L  ++ + + S   +V     R L
Sbjct: 160 SELVNISQCPILKPELNALLQPLHAVLSSLQAVR-RLGHVELVQADSGSLLVL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D    E   +L    H  +  + L   ++  +                  L        F
Sbjct: 215 DALTAEDRQKLERFSHQYRLSLFLAAESDTLEQVSGGMP-----HYQSHDLTLTFSPRDF 269

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   LA       D +L+L+CG GNF+L + +    V+ VE     V  
Sbjct: 270 IQVNDDVNQQMVARALAWLDLQPEDRVLDLFCGMGNFTLPMGKFAKNVVGVEGVAALVAK 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A YN   N +NNV   + + +E         E             F  + +DP R+G   
Sbjct: 330 AGYNAELNCLNNVAFWQHNLEEDVSRQPWAVE------------GFNKVLLDPARAGAAG 377

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               +++  P  ++Y+SCNP +L RD   +L++ + +ER+ + D FP+T H+E  VL  R
Sbjct: 378 VMAHIIKIAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMVLFSR 437

Query: 365 K 365
           K
Sbjct: 438 K 438


>gi|168236003|ref|ZP_02661061.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194733918|ref|YP_002115909.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194709420|gb|ACF88641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290826|gb|EDY30180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 431

 Score =  233 bits (594), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 139/356 (39%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I   EP  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGEPWGYRRRARLSLNCLPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|193215656|ref|YP_001996855.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC
           35110]
 gi|193089133|gb|ACF14408.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC
           35110]
          Length = 475

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 144/400 (36%), Gaps = 58/400 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH---------- 53
            Y  QL +K  ++   +L        +    I      +YR + +F   +          
Sbjct: 89  SYAAQLRQKEKQVSDALLHIGGFKTFLMKPAIHAPHIFNYRNKVDFSFSNQRYLLPEEIG 148

Query: 54  --DGDDLYHIMFDQQTKER------MRIDYFMPGSLLIN---------ALMIEMMA--TI 94
             +G+      F             + ID     S  +N          L  ++ A  T+
Sbjct: 149 VEEGELQKRTDFALGFHAPRRYDKAIDIDNCDIASPEMNTVLHIVKAFCLEKKLTAYSTV 208

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA-----WRECAIRLRDALHARKYQI 149
             E  LR  + +    T +    +VT  +   L              +L   ++    + 
Sbjct: 209 THEGFLRNLVIRSGENTGELMVNLVTSWHDTELMQELEYQLKEALQEKLTTFVNNISTKK 268

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
             +    +    + + ++ E L        +    NSF Q N+   +++ +      K  
Sbjct: 269 NTVAFGEEEFCVIGKGHITETLG----NYAFDISANSFFQTNSAQTLNLYQKTREFAKLS 324

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           Q D++ +LYCG G+ S+ ++    +VL +E+   ++E A+ N   N V N     +  K+
Sbjct: 325 QDDIVYDLYCGTGSISIFISDACQKVLGIELVDSAIEDAKKNAERNDVKNCAFRMLDLKD 384

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
           F +       F               +  DPPR+G+    V M+   +   I+Y+SCNP 
Sbjct: 385 FGKISPELEAFGL----------PDVVITDPPRAGMHPKAVQMLLRLSPKRIVYVSCNPA 434

Query: 327 SLCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           SL RD  +      + +      D FP+T H+E   +  +
Sbjct: 435 SLARDGQLFCENGEYQLLEAQPVDMFPHTNHIESVAVFEK 474


>gi|222055874|ref|YP_002538236.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32]
 gi|221565163|gb|ACM21135.1| RNA methyltransferase, TrmA family [Geobacter sp. FRC-32]
          Length = 437

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 145/379 (38%), Gaps = 34/379 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGD 56
                  +Y  Q+ EK      ++      + +         EP  YR R +  + + G 
Sbjct: 76  GCNWQHVEYSSQIMEKTLIFADLLWRAARISPETVLPLLRAPEPYGYRSRVQLKVNYQGG 135

Query: 57  DLYHIMFDQQTKERMRI-DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                 +  ++ + + I  +       IN  +  +   +   P     + QID      +
Sbjct: 136 KTRLGFYRPKSHQVVDIPGHCAITHKSINDTLESLRLLMEGCPD-PGNISQIDIARGDDE 194

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA- 174
              V + +         E  ++ R+           I   N T      +++  R++   
Sbjct: 195 SISVIVNHAGASVAEVSEYLLQHREISDLIGS--MFIRHKNSTTSIFGAEHLSYRISGNT 252

Query: 175 -----GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVL 227
                 +TL +   +++F+Q N   N+ ++  V++    + G   +L+LYCGNGNFS+ L
Sbjct: 253 LPGGSEKTLFF--SKDAFSQINYQQNMQLI-RVVSDFAALTGKEKVLDLYCGNGNFSIPL 309

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A     V   E  +PS+  AR N   N V N+      S    + +   RE         
Sbjct: 310 ADKAAHVTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAAAVKKLAAARE--------- 360

Query: 288 HSYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
               F  + +DPPR+G  +    +       I+Y+SC+P +L RDL IL      +  + 
Sbjct: 361 ---TFDVVVLDPPRNGAAEVMHHIQALNADRIIYVSCDPATLARDLGILKKNGFQVINIQ 417

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E   LL +
Sbjct: 418 GVDMFPQTYHLESVTLLTK 436


>gi|224539551|ref|ZP_03680090.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518832|gb|EEF87937.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 476

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/400 (18%), Positives = 139/400 (34%), Gaps = 58/400 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-------- 55
            Y +Q+  K  ++   +              +   +   YR + E+   +          
Sbjct: 91  PYSEQIKYKQKQVTDNLTRIGKIELPEISPILGSEKTQFYRNKLEYTFSNKRWLTEEEIK 150

Query: 56  -DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK- 103
            + +Y  M            + + I+       + N +   +             LR + 
Sbjct: 151 QNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNTVRDYAYEHNYSFINLRTQE 210

Query: 104 --LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL----RDALHARKYQIQLIGRANK 157
             L  +   TS + + +V LI     +        +L     D        + +I     
Sbjct: 211 GMLRNMIIRTSTTGELMVILIAKIEEEVEELRLFKQLLQYVADTFPEITSLLYIINNKRN 270

Query: 158 TKICL-------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
             I          +D++ E +      L ++    SF Q N+    + L  +     G+ 
Sbjct: 271 DTITDLDVYTFKGKDHIFEEM----EGLRFKIGPKSFYQTNSEQAYN-LYKIARNFAGLT 325

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G   + +LY G G  +  +++   +V+ +E    ++E A+ N   N + N        K+
Sbjct: 326 GKELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGDMKD 385

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD 326
                         +D      R   I  DPPR+G+    V ++       I+Y+SCNP 
Sbjct: 386 MLT-----------QDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPA 434

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +  RDL +L   + ++ +   D FP+T H+E  VLL  + 
Sbjct: 435 TQARDLQLLDVKYKVKAIQPVDMFPHTHHVENVVLLELRN 474


>gi|210608457|ref|ZP_03287833.1| hypothetical protein CLONEX_00012 [Clostridium nexile DSM 1787]
 gi|210153033|gb|EEA84039.1| hypothetical protein CLONEX_00012 [Clostridium nexile DSM 1787]
          Length = 546

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 155/391 (39%), Gaps = 48/391 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHI---WH 53
            G +     YE+Q+  K D++++++ A  + + +        +   YR + EF     + 
Sbjct: 81  GGCMYQTMSYEEQMKMKGDQVKEILDAAILEDYEFEGVKASPKEFAYRNKMEFSFGDEYK 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRA 102
           DG     +     T + +           +  +++ ++   + +             LR 
Sbjct: 141 DGPLSLGLHKKGSTYDVLTAADCKLVHEDMTKILLCVLEYFKEKNVAYYKKMQHVGYLRH 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAI--RLRDALHARKYQIQLIGRAN 156
            L +    T +    +VT         LL DA     +  ++   LH     +  + +++
Sbjct: 201 LLLRRGDQTGEILVNLVTTTQEEHDLSLLVDALLALQLEGKIVGILHILNDSLSDVVQSD 260

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215
           +T+I   +D+  E+L      + ++    SF QPN      + + V      I    + +
Sbjct: 261 ETRILYGQDFFYEKLL----DMDFKITPFSFFQPNTKGAEILYKTVRDYIGDIHNMTVFD 316

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           L+ G G  + VLA    +V+ VEI + +VEAA+ N   N ++N + +     +       
Sbjct: 317 LFSGTGTIAQVLAPVAKQVIGVEIVEEAVEAAKENAEHNGLSNCRFIAGDVFKVL----- 371

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
                     D    +   I +DPPR G+    +  +       I+YISC   SL RDL 
Sbjct: 372 ----------DEIEEKPDVIVLDPPRDGIHPKALPKILDYGVDKIVYISCKVTSLARDLE 421

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLV 363
           ++    + +E+    DQF  T H+E  VLL 
Sbjct: 422 MIQARGYRVEKCTAVDQFCQTVHVETVVLLS 452


>gi|161615885|ref|YP_001589850.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365249|gb|ABX69017.1| hypothetical protein SPAB_03678 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 431

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 139/356 (39%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++  +  +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCLVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|192362323|ref|YP_001983036.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cellvibrio japonicus
           Ueda107]
 gi|190688488|gb|ACE86166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cellvibrio japonicus
           Ueda107]
          Length = 485

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 157/375 (41%), Gaps = 30/375 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57
              L   + E QL  K   + + +  +            RSE + YR RA   +W++ D 
Sbjct: 123 GCQLQHLKPEAQLLMKQQVVLEQVHRWGGLTPKRVLPPLRSESLGYRSRARLGVWYEADS 182

Query: 58  LYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
              + F QQ  K    I+        +N L+  +   ++     +A +  I+ + +QS  
Sbjct: 183 SVTLGFRQQQRKTLTNIESCSVLLPALNRLIGPLRQWLQARVANKA-VTHIELVAAQSGP 241

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
           A++   + + L    R+    L         Q+ L    N+    L+   VD  L +   
Sbjct: 242 AVIVR-HTKPLVALQRQALAELAQR---ESCQVWLEPNGNQGLTDLEGSPVDPHLVLDVA 297

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
            L        FTQ N  +N  M++  L        D +L+ +CG GNF+L +A    RV+
Sbjct: 298 GLPLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLVLDFFCGMGNFTLPMASRVARVI 357

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E+ +P V  A+ N     ++N+        EF +A   + +  RL+ +   +     I
Sbjct: 358 GLEVVEPMVTRAQANATRLGLDNL--------EFLKADLSQMDSPRLRQLCSQA---SAI 406

Query: 296 FVDPPRSGLDDATVGMVQAYP-------HILYISCNPDSLCRDLSILST-THTIERLALF 347
            +DPPR G  +    +             I+Y+SCNP +L RD ++L+   + ++ L + 
Sbjct: 407 LLDPPRDGAKELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLAEAGYGLDALGVM 466

Query: 348 DQFPYTRHMECGVLL 362
           D FP+T H+E   L 
Sbjct: 467 DMFPHTSHVESMALF 481


>gi|331091394|ref|ZP_08340233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330404258|gb|EGG83805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 454

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 155/395 (39%), Gaps = 54/395 (13%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP--IHYRMRAEFHI---WH 53
            G +     Y++Q+  K  ++++++ A    +   +  +  P    YR + EF     + 
Sbjct: 81  GGCMYQTMSYDEQIKMKSQQVKEILDAVVKDDYVFEGVKKSPKQFAYRNKMEFSFGDEYK 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRA 102
           DG     +     T + + +         +  ++  ++   + +             LR 
Sbjct: 141 DGPLSLGLHKKGSTYDVLTVSDCKLVHEDMTKILNCVLTYFQEKGVGYYKKMQHIGYLRH 200

Query: 103 KLFQ---------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153
            L +         I+ +T+  ++  +  +  RLL     +   ++   LH     +  + 
Sbjct: 201 LLLRRGDKTGEILINLVTTTQEEHDMQPLVDRLLA---LQLEGKIVGILHILNDSLSDVV 257

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-D 212
           +++KT +   +DY  E L      + ++    SF QPN+     + + V      I    
Sbjct: 258 QSDKTILLYGQDYFYEELL----GMEFKITPFSFFQPNSVGAEVLYDTVREYIGDIDNMT 313

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G    +LA     V+ VEI + +VEAA+ N   N ++N K +     +    
Sbjct: 314 IYDLFSGTGTIGQILAPVAKEVIGVEIIEEAVEAAKENAEHNGLSNCKFIAGDVFKVL-- 371

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                        D    +   I +DPPR G+    +  +  Y    I+YISC   SL R
Sbjct: 372 -------------DEIEEKPDVIVLDPPRDGIHPKALPKILDYQVDKIVYISCKVTSLAR 418

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL ++    + +E+    DQF  T H+E   LL +
Sbjct: 419 DLEMIQERGYRVEKCVAVDQFANTAHVETVALLSK 453


>gi|303246914|ref|ZP_07333190.1| RNA methyltransferase, TrmA family [Desulfovibrio fructosovorans
           JJ]
 gi|302491621|gb|EFL51504.1| RNA methyltransferase, TrmA family [Desulfovibrio fructosovorans
           JJ]
          Length = 450

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 141/390 (36%), Gaps = 46/390 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDG 55
            G L  D  Y  QL  K  ++ + +              +   E   YR + EF     G
Sbjct: 80  GGCLHQDLDYAAQLFWKRQQVAETLSRLGGLRDVDVAPAVASPETYGYRNKMEFAFA--G 137

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKL 104
                +   Q+    + I+  +                  A  +        + + R  +
Sbjct: 138 RLHLGLHERQRPGRVLDIEKCLLMDDRTGDILAFAREACAATGLAAYDPRTGKGVWRHLV 197

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLD------DAWRECAIRLRDALHARKYQIQLIGRANKT 158
            +    T      ++T    R  D      +A  E    +   +H+ +     +    + 
Sbjct: 198 VRRSLATGGRLVHLITGPSRRAGDAAHHFGEALLERFPDVSGFVHSVRRAPTTVAIGERQ 257

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELY 217
              L  D+++ER+      +  R   ++F Q N      +   V  AA       L ++Y
Sbjct: 258 VFALGTDHLEERIG----DVRLRISADAFAQTNTTAAEKLYAVVAQAAGTAPDRALWDVY 313

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +L LA  F+ V  VE  K +V  A+ +   +   N       +           
Sbjct: 314 CGCGGIALALAPGFETVYGVEADKRAVADAQKSAKLSERENCVFKTGDAATVLA------ 367

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                   D+ + +   + +DPPR+G D  T+  V   A   ++Y+SCNP +L RDL IL
Sbjct: 368 --------DLAATKPAVVTLDPPRAGADGQTLAAVMDAAPEKLVYVSCNPATLARDLKIL 419

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  +T+ ++   D FP+T H+E    L  +
Sbjct: 420 SDLYTLTQVTPVDLFPHTAHIEVVAALELR 449


>gi|330873515|gb|EGH07664.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 189

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 101/189 (53%), Positives = 130/189 (68%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           T  YRQ E +FTQPN  +N  ML W   A    Q DLLELYCGNGNF+L LA    +VLA
Sbjct: 1   TFSYRQPEGAFTQPNGTVNGKMLNWAFDALGERQDDLLELYCGNGNFTLPLATRVRKVLA 60

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            EI+K SV AA  N+  N V+NV +VR+S++E T+A+   R F RL  +D+ SY F ++F
Sbjct: 61  TEISKTSVNAALSNLDDNGVDNVTLVRLSAEELTEALNEVRPFRRLHGVDLKSYDFGSVF 120

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           VDPPR+G+D  T  + + +  ILYISCNP++L  +++ L  TH +ER ALFDQFPYT HM
Sbjct: 121 VDPPRAGMDPDTCELTRRFERILYISCNPETLAANIAQLHDTHRVERCALFDQFPYTHHM 180

Query: 357 ECGVLLVRK 365
           E GVLLVR+
Sbjct: 181 ESGVLLVRR 189


>gi|200388031|ref|ZP_03214643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199605129|gb|EDZ03674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 431

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQIN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L+   + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALANAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|53803775|ref|YP_114333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus
           capsulatus str. Bath]
 gi|90126220|sp|Q606W5|RUMA_METCA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|53757536|gb|AAU91827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Methylococcus
           capsulatus str. Bath]
          Length = 443

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 137/375 (36%), Gaps = 30/375 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWH--DG 55
             +L     + Q+A K D L                   R     YR RA     +    
Sbjct: 87  GCSLQYLSEDAQIALKEDLLLDQFRRIGKVEPAAQFPPLRGPHWGYRSRARLGARYVAKK 146

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   +  + + + +         +   +      I     LR +L QI+    +  
Sbjct: 147 GRELVGFREHASAKIVDMTDCPVLHPALGERIQAFAELIEGL-SLRERLPQIEAAVGEER 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-RLTVA 174
            A+V     R+L+D   E   RL      +   + +      +   +  +   +   ++ 
Sbjct: 206 TALV----FRVLEDPTAEDFARLARFGKDQGLDVYIQREGRDSVAPVYPETAHDLSYSLP 261

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              + +R     FTQ N  IN  M++ V+ A      + +L+L+CG GNF+L LAR    
Sbjct: 262 EWEVTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEERVLDLFCGLGNFTLPLARRAGH 321

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  VE    +V  A  N A N + NV+            + +                + 
Sbjct: 322 VTGVEGGAEAVARAIRNAADNGIGNVEFHVAD-------LSKPESCG-----SWAGREYH 369

Query: 294 TIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
            + +DP RSG  +  +  V  +    I+Y+SCNP +L RD  IL     + + +  + D 
Sbjct: 370 KVLLDPSRSGALE-ILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYGYRLLKAGVMDM 428

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E   +  R
Sbjct: 429 FPHTAHVESIAVFER 443


>gi|323699039|ref|ZP_08110951.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. ND132]
 gi|323458971|gb|EGB14836.1| RNA methyltransferase, TrmA family [Desulfovibrio desulfuricans
           ND132]
          Length = 460

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 144/396 (36%), Gaps = 48/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDGD 56
              +    Y +Q+A+K  ++   +           +         +YR + EF      D
Sbjct: 81  GCAVQDLDYAEQVAQKAAQVENALRRIGGAADFVLDPPAPSPAVWNYRNKMEFAFEQGED 140

Query: 57  DLYHIM------FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---------- 100
                +       D+     + I+     +     ++      +R   L           
Sbjct: 141 GPRLGLRATLPAGDKGLAPVLDIEECHLCASRDVDILRAARDFVRASGLSAYDPADNTGF 200

Query: 101 -RAKLFQIDYLTSQSDQAIVTLI------YHRLLDDAWRECAIRLRDALHARKYQIQLIG 153
            R  + +   L ++    ++T            L ++  +    L   +H+ + +  L  
Sbjct: 201 WRHLVVRHTAL-NEIMVHLITAEAPDDYGQAEALGESLADRFPDLTSFVHSSRARRSLAA 259

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-- 211
              K    L    V E +    RT+ Y    N+F Q N      +   V     G+ G  
Sbjct: 260 TGEKAVFRLGARTVTEEVAHGDRTVRYHLGPNAFFQTNTAGAGELFGTV-REFCGLTGVE 318

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+LYCG G   + LA    RV+ VE+++ +V  A  +   N + N +    S      
Sbjct: 319 TVLDLYCGCGAIGIFLADQARRVVGVEVSEEAVSKAWASAKLNKLTNCEFTAAS------ 372

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
            +        L   D        + VDPPR+G+ ++T   +   A   IL +SC+P +L 
Sbjct: 373 -LDSPAALKGLPKAD-------VLVVDPPRAGIHESTAQAILTLAPKKILAVSCDPTTLA 424

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD+   S  +T+ R    D FP+T H+E   LL RK
Sbjct: 425 RDVKRFSEHYTLTRARAVDMFPHTHHIETVTLLERK 460


>gi|204928019|ref|ZP_03219219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204322341|gb|EDZ07538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 431

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLAALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMQH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|325662109|ref|ZP_08150727.1| hypothetical protein HMPREF0490_01465 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471558|gb|EGC74778.1| hypothetical protein HMPREF0490_01465 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 459

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 81/394 (20%), Positives = 147/394 (37%), Gaps = 51/394 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMML----AFQVPNLQIFRSE-PIHYRMRAEFHIW--- 52
            G +     Y+ Q+  K ++++ +M      +      +  S     YR + EF      
Sbjct: 81  GGCMYQTMDYQAQVKMKAEQIQSIMDAAVDGYSYTFEGVKESPKEFAYRNKMEFSFGDEY 140

Query: 53  ---------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN---ALMIEMMATIRLEPLL 100
                    H     Y ++     K  +  D     S +++      +     ++    L
Sbjct: 141 KDGPLSLGLHKKGSTYDVLTASDCK-LVHEDMTQILSCVLDYFKERGVSYYKKMQHIGYL 199

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGR 154
           R  L +    T +    +VT            E  + L         LH     +  + +
Sbjct: 200 RHLLLRRGDTTGEILVNLVTTTQEEHDLAPLVEKLLALPVEGKIVGILHILNDSLSDVVQ 259

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DL 213
           +++TKI   +DY  E++      L ++    SF QPN+     +   V      I    +
Sbjct: 260 SDETKILYGQDYFYEKIM----GLEFKITPFSFFQPNSRGAEVLYSTVREYIGDIHDMTV 315

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +L+ G G  + VLA    +V+ VEI + +VEAA+ N   N ++N + +     +     
Sbjct: 316 YDLFSGTGTIAQVLAPVAKQVIGVEIIEEAVEAAKENAERNGLHNCRFIAGDVFKVL--- 372

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331
                       D    +   I +DPPR G+    +  +      +I+YISC   SL RD
Sbjct: 373 ------------DEIEEKPDVIVLDPPRDGIHPKALPKILDYGVENIVYISCKATSLARD 420

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L ++    + + +    DQF  T H+E  VL+ +
Sbjct: 421 LEMIQARGYRVVKCTAVDQFCQTVHVETVVLMSK 454


>gi|296104454|ref|YP_003614600.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058913|gb|ADF63651.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 432

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 82/356 (23%), Positives = 144/356 (40%), Gaps = 30/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ--QTKER 70
           Q   K + L +++         I   +P  YR RA   + +   +    M  +   + + 
Sbjct: 100 QQKSKSNALARLLR---HDVDDIIADQPWGYRRRARLSLSYQPKNERLEMGFRKAGSSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + I         + AL+ ++ A +     +R  L  ++ + + +   +V     R     
Sbjct: 157 VDIRQCPILVPRLEALLPDVHACLSGLDSVRH-LGHVELVLANNGPLMVL----RHTAPL 211

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            ++   +L    H+ +  + L  ++      L++   D     A   L        F Q 
Sbjct: 212 SKKDREKLERFSHSHELALFLAPQSE----ILEQVTGDAP-WYASNGLRLTFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N G+N  M+E  L          +L+L+CG GNF+L LAR    V+ VE     V   + 
Sbjct: 267 NDGVNQQMIETALTWLDVQPTDRVLDLFCGMGNFTLPLARKAASVVGVEGVDALVAKGQE 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N + NV     + +E             +         F  I +DP R+G      
Sbjct: 327 NAQQNGLQNVTFFHQNLEE------------DVTQQPWAKQGFDKILLDPARAGAPGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
            +++  P  ++Y+SCNP +L RD  ++LS  + I+RLA+ D FP+T H+E  VL  
Sbjct: 375 HIIKLAPKRVVYVSCNPATLARDSEALLSAGYQIQRLAMLDMFPHTGHLESMVLFE 430


>gi|67923770|ref|ZP_00517234.1| tRNA (uracil-5-)-methyltransferase/TrmA [Crocosphaera watsonii WH
           8501]
 gi|67854397|gb|EAM49692.1| tRNA (uracil-5-)-methyltransferase/TrmA [Crocosphaera watsonii WH
           8501]
          Length = 455

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 142/379 (37%), Gaps = 47/379 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHI-WHDGDDLYHIM 62
           QY  QL  K +++ Q +           L I  S   + YR +A + +       +    
Sbjct: 92  QY--QLKAKENQVIQALKRIGGFDNPSVLPILPSPDSLGYRNKATYPLKRSTTGTVQAGY 149

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-------EPLLRAKLFQIDYLTSQ-S 114
           + + T + + ++        +N ++ E+   I+        E     KL  +     + +
Sbjct: 150 YQRNTHQIINLNQCPIQDTRLNPILAEVKQDIQAQGWSIYNEKTGTGKLRHLGLRIGKKT 209

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-------CLDRDYV 167
            +  +TL+        ++E A                       KI        + R ++
Sbjct: 210 GEIFLTLVSSSKKIPNFQEQAEIWLQRYPNLVGVSINYNPHQGNKIFGLETFNYVGRHHL 269

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226
            E        L ++   ++F Q N      +L  +L   +  ++  L++ YCG G F+L 
Sbjct: 270 IEEFGQ----LHFQLSSDTFFQVNTEAAEILLSVLLEKLSLTVEKTLIDAYCGVGTFTLP 325

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA+   + + +E  + S+  A  N   N ++N+K    + +     +             
Sbjct: 326 LAQKVAQAVGIENNQNSITQAENNAKINGIDNIKFYTGNVENILPFLN------------ 373

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT--HTIE 342
                   + +DPPR G D + +  ++    P I+YISC P +L RDL  L     + +E
Sbjct: 374 ---IFPDIVVLDPPRKGCDRSVIDTLRKINPPLIIYISCQPSTLARDLKKLCQEDLYKVE 430

Query: 343 RLALFDQFPYTRHMECGVL 361
            +   D FP T H+E   +
Sbjct: 431 SIQPIDFFPQTPHVESMAV 449


>gi|168205921|ref|ZP_02631926.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
           JGS1987]
 gi|170662572|gb|EDT15255.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
           JGS1987]
          Length = 451

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 150/395 (37%), Gaps = 53/395 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHD--- 54
             +     YE+QL  KV++++ +    +VP  +     + P    YR + E+    +   
Sbjct: 79  GCSSQTIPYEKQLELKVEQVKDLFKEAEVPTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103
           G+    +    ++   + +D  +        I    ++            +     LR  
Sbjct: 139 GELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154
           + +      ++++ +V L+    +D    E            +L+  +H     +     
Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTEIIKGLNLKGKLKSIIHTESDALSEAVI 255

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
             K  I    D++ E L      L ++    SF Q N+     +   V          ++
Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + +
Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
           +                +   I +DPPRSG+    +  V  +  P I+Y+SCNP +L  D
Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416

Query: 332 LSILSTT-HTIERLALFDQFPYTRHMECGVLLVRK 365
           L +L    + IE+  L D FP T H+E  V L +K
Sbjct: 417 LKVLEAKEYEIEKTLLMDMFPNTPHVETVVKLNKK 451


>gi|297171088|gb|ADI22100.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [uncultured
           Planctomycetales bacterium HF0200_11L05]
          Length = 298

 Score =  232 bits (592), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 104/301 (34%), Positives = 174/301 (57%), Gaps = 8/301 (2%)

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           +  +++ ++        IN L+ ++   +     ++ KLFQ +   S+S + IV+LIYH+
Sbjct: 3   EKNKKINVNELTICDAQINQLISQLKIKLLSSDEMKEKLFQTEIQVSRSGEGIVSLIYHK 62

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD  W + A +L   + A      ++GR+ K K+ + +D+V E      + +     E 
Sbjct: 63  PLDANWIKKAKKLSSEIGA-----SIVGRSRKQKLVVGKDFVTETYDAHIKKIKVNLYEQ 117

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            F+QPN  I   ML WV + +K +   + EL+CG G F+++    + RVLA E ++PSV+
Sbjct: 118 CFSQPNPYICDEMLAWV-SKSKKLHHHVTELHCGVGTFTILXXXXYSRVLATENSRPSVK 176

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           A   N+  N + NV+  RMS  E  +A+ ++REFNR+K I++  +R   +F+DPPRSGLD
Sbjct: 177 ALEKNMHINSIENVETARMSGLETLEALIKKREFNRMKHINLIDFRKDVLFLDPPRSGLD 236

Query: 306 DATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
             ++ +++   Y  I+Y+SC   SL  +L  L T + +++ ALFDQFPYT H+E GV+L 
Sbjct: 237 VDSINLIKQLKYKEIIYLSCGFKSLKSNLKELLTNYKVKKAALFDQFPYTDHIETGVILR 296

Query: 364 R 364
           +
Sbjct: 297 K 297


>gi|283768881|ref|ZP_06341792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
 gi|283104667|gb|EFC06040.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
          Length = 386

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 148/383 (38%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
            G  +++Q Y  Q+  K   L ++    +     +    P HYR +       +   ++ 
Sbjct: 10  GGCSMLEQPYANQIRWKQAVLERLFPK-ETVLPMLKDKNPDHYRHKIYATFGKNAQGIFL 68

Query: 61  IMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQIDY 109
            ++       +     +               L N   + +    R + LLR    +I  
Sbjct: 69  GLYGYHNHRLVNSMDCLIQHKKGNEILRTLCELANDFHLSVYQEDRRKGLLRHVYLRI-- 126

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---- 165
            +S+ ++ ++ L+         ++    L +     +  I       KT I L       
Sbjct: 127 -SSKDEKVMMVLVLGEKKFPGSKKLVKILLEKHPEIETVILNYNF-RKTSIVLGEQERVV 184

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           Y    L      L +R   +SF Q N      + +  +  A    +  +++   G G  S
Sbjct: 185 YGKGYLMDKIDGLSFRISSHSFYQVNPKQAYRLYQRAIELANLKKEMKVVDACSGTGTIS 244

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L+LARH   V+ +E+   +V  A  N   N + NV+ ++   +E     R          
Sbjct: 245 LLLARHVQSVIGIELNPQAVFDANENKKVNQIQNVQFLQGRVEEVIPRYR---------- 294

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIE 342
                 +   +F+DPPRSG+    +  +     P I+YISC+P++  RD+ IL + ++I 
Sbjct: 295 -----IQADVLFLDPPRSGMGPCFMTYLDQLKIPKIVYISCDPNTQARDIQILKSHYSIT 349

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
                D FP T+++E  ++L RK
Sbjct: 350 VSQGVDMFPQTKNIENILVLERK 372


>gi|223986763|ref|ZP_03636748.1| hypothetical protein HOLDEFILI_04071 [Holdemania filiformis DSM
           12042]
 gi|223961284|gb|EEF65811.1| hypothetical protein HOLDEFILI_04071 [Holdemania filiformis DSM
           12042]
          Length = 484

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 152/385 (39%), Gaps = 33/385 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L+I + E QL  K + +++ ++ +           I     + YR + +  I  +  
Sbjct: 81  GCPLMILKPEAQLQVKRELVQEALIKYAGLSRDKVQPVIASPSGLGYRNQCKLPIREERG 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L + +F++ +   M I + +     + AL  +++A        R K +     T     
Sbjct: 141 RLVNGLFEEGSNRVMPIAHCLIHDPDLEALRKQILALANQ---FRLKAYDPKKGTGLRTL 197

Query: 117 AIVTLIYHRL-----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----V 167
            +              +D+  +  I    A+      +Q I    +T+      +     
Sbjct: 198 VLRGFEGQYQCVLVSGEDSLPKGFIEKLKAIEGMTCIMQNINPDKRTRQLFSNRWSLLAG 257

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           ++RL V    +       SF Q N    + M+    +  +     L+E Y G G  SL+L
Sbjct: 258 EDRLPVQFGDVRLSLSCASFFQLNRPQALQMMRMAASLIEPCD-TLVEAYSGVGGISLML 316

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                 ++ +E    +VE A+ N   N   NV+ V   + +  + + R            
Sbjct: 317 KEKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEMKKIIRR----------- 365

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLA 345
              +   + VDPPR+GLD A +  ++      I+YISCNP +L ++L  L   + ++ + 
Sbjct: 366 --TKIDAVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKELRDLYEVKTVI 423

Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370
            FD FP T H+E  VLL +  +  H
Sbjct: 424 PFDMFPNTPHVETVVLLSKLKTKKH 448


>gi|120603103|ref|YP_967503.1| RNA methyltransferase [Desulfovibrio vulgaris DP4]
 gi|120563332|gb|ABM29076.1| 23S rRNA m(5)U-1939 methyltransferase [Desulfovibrio vulgaris DP4]
          Length = 468

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 144/391 (36%), Gaps = 41/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEP--IHYRMRAEFHIWHDGD 56
             T     Y  QLA K   +R  +        PN+      P    +R + EF    DG 
Sbjct: 82  GCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNKMEFAFTTDGR 141

Query: 57  DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQIDY 109
              H  +  +   E + +      +     ++       R   L           ++   
Sbjct: 142 GALHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDAAHRGFWRFLV 201

Query: 110 LT--SQSDQAIVTLI--YHRLLDDAWRECAIRLRDAL-------HARKYQIQLIGRANKT 158
           +   ++  Q +V  I   H   +   R     LR A+       H+ + Q   +   + T
Sbjct: 202 VREPARGGQCLVQCITAPHPEAEHVVRAFFTALRQAVPEVTGCVHSIRSQNSQVAYGDAT 261

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
                   + E+L        +    ++F Q N      +   V     G+ G   + +L
Sbjct: 262 VFTEGEIVLTEKLGAIELDFGH----DTFLQTNTRATELLYGEV-ERMAGLSGREHVWDL 316

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G+ +L LA H   +  +E    SVEAA+ N  A    +   V    +    A+ R 
Sbjct: 317 YCGVGSITLWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVR----ALLRS 372

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334
           R   + ++          +  DPPR+G+    +  +   A   I+Y+SC+P ++ RD+ +
Sbjct: 373 RSKGKAQEPI-----PDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGL 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L   +T+      D FP+T H+E  VLL  K
Sbjct: 428 LMQRYTLHEARPVDLFPHTPHVETVVLLSNK 458


>gi|42519480|ref|NP_965410.1| hypothetical protein LJ1606 [Lactobacillus johnsonii NCC 533]
 gi|51316713|sp|Q74IG2|Y1606_LACJO RecName: Full=Uncharacterized RNA methyltransferase LJ_1606
 gi|41583768|gb|AAS09376.1| hypothetical protein LJ_1606 [Lactobacillus johnsonii NCC 533]
          Length = 459

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 134/387 (34%), Gaps = 40/387 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y +QL  K   + + +  +   +         I      +YR +A++ I  +   
Sbjct: 88  LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPTPNAWNYRNKAQYQIEFNKGK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               ++   ++  + +      +            LI+ L I +    R    ++    +
Sbjct: 148 SKLGLYAPNSRRLIDLPDMPTQTKETQKVEREIKKLIDKLHIRIADFRRHTDGIKTIAVR 207

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
               T +    ++T+              ++L + +                NKT     
Sbjct: 208 QSNATGEIQVTLITIGKKIKDLKLLASHIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           + ++ E +        ++    +F Q N      +    L          L++ Y G G 
Sbjct: 268 KSHITEEILGK----KFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++             L
Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL------------L 371

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL    +  +        +Y+SCNP +L +DL +LS  + 
Sbjct: 372 PELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSDAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +   D  P T   E    LV + +
Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRKN 458


>gi|330012192|ref|ZP_08307325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS
           92-3]
 gi|328533894|gb|EGF60562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella sp. MS
           92-3]
          Length = 434

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 134/369 (36%), Gaps = 30/369 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
                      Q   K   L ++M         +    P  YR RA   + +        
Sbjct: 89  GCQQQHASVPLQQQSKRAALGRLMKR---EVDDVIAGAPWGYRRRARLSLNYQPKTQQLQ 145

Query: 62  MFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           M  +Q   K  + +         + AL+  +   +     LR  L  ++ + + +   +V
Sbjct: 146 MGFRQANAKAIVDVVQCPVLVPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
             + H     A      +L          + L  ++   +         E        L 
Sbjct: 205 --LRHTAALPAT--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q N G+N  M+   L        D +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LVFSPRDFIQVNDGVNQQMVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  R N A N ++NV     + +E                     + F  + + 
Sbjct: 316 GVPALVEKGRENAARNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLA 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  ++Y+SCNP +L RD   +L   + I+RLA+ D FP+T H+
Sbjct: 364 PARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHL 423

Query: 357 ECGVLLVRK 365
           E  VL  R+
Sbjct: 424 ESMVLFERR 432


>gi|323345673|ref|ZP_08085896.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269]
 gi|323093787|gb|EFZ36365.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269]
          Length = 475

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 142/397 (35%), Gaps = 55/397 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHI----WHDGDDLY 59
            YE+QL  K  ++   +       L   R      +   YR + EF      W   +++ 
Sbjct: 91  PYEEQLKAKQQQVFDQLSRIGKVELPELRPILGSVKTSEYRNKLEFGFSNKRWLTKEEVA 150

Query: 60  HIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRA 102
                               +   I+       L N +  E+        L       + 
Sbjct: 151 SGTEFSDMNAVGFHITGAFDKIYPIEKCHLMDDLHNKIRNEIRDYALANDLSFFDIRQQT 210

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--- 159
            L +   + + +    + L+  +L     R+ A  L   +  R  QI  +   +  K   
Sbjct: 211 GLLRDMMIRNSNTGEWMLLLQFKLETLEDRQKAETLLQHIADRFPQITSLLYVDNHKGND 270

Query: 160 --------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
                   +    D++ E +      L ++    SF Q N     H+             
Sbjct: 271 TFGDLPVEVFKGNDHIFEEM----EGLRFKVGPKSFYQTNTEQAFHLYSVARELASLTGK 326

Query: 212 DLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L+ +LY G G  +  +A    +V+ +E    ++E A+ N A N + N        K+  
Sbjct: 327 ELVYDLYTGTGTIANFVAGRAKKVIGIEYVPEAIEDAKVNSAVNRIENTLFFAGDMKDIL 386

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSL 328
                        D      +   I  DPPR+G+    +  +++A P  I+Y+SCNP + 
Sbjct: 387 TD-----------DFIREHGQPDVIITDPPRAGMHTDVIQTILRANPQRIVYVSCNPATQ 435

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RDL+ L   + ++ +   D FP+T H+E  VLL RK
Sbjct: 436 ARDLAALDMQYKVDIVQPVDMFPHTPHVENVVLLTRK 472


>gi|283786672|ref|YP_003366537.1| 23s rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282950126|emb|CBG89762.1| 23s rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 432

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 141/358 (39%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKER 70
           Q   K   L ++M   +    +I  + P  YR RA   + +        M  ++  + + 
Sbjct: 100 QQRSKSAALSRLM---KCEVAEIVAAGPWGYRRRARLSLQYQSKTQQLQMGFRKAASSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + I      +  + AL+ ++ A +     +R  L  ++ + + S   ++     +L    
Sbjct: 157 VDIRQCPILAPQLEALLPDVRACLSALQGVRH-LGHVELVQASSGTLMILRHTAQLSAG- 214

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                 +L    H+R+  + L       +    +    E        L        F Q 
Sbjct: 215 ---DRQKLERFSHSRQLALYLAPTGEILERVSGQTPWYE-----SNGLRLHFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N G+N  M+   LA         +L+L+CG GNF+L LA     V+ VE     VE  + 
Sbjct: 267 NEGVNQQMVARALAWLEVQPTDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQE 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N ++NV     + +E             +         F  + +DP R+G      
Sbjct: 327 NARQNELHNVTFFHANLEE------------DVTRQPWAKSGFDKVLLDPARAGAAGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +++  P  I+Y+SCNP +L RD   +L   + I+RLA+ D FP+T H+E   L   K
Sbjct: 375 HIIKLQPRRIVYVSCNPATLARDSEQLLRAGYQIQRLAMLDMFPHTGHLESMALFEHK 432


>gi|110802049|ref|YP_699391.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens SM101]
 gi|110682550|gb|ABG85920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
           perfringens SM101]
          Length = 452

 Score =  232 bits (591), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 149/394 (37%), Gaps = 53/394 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHD--- 54
             +     YE+QL  KV++++ +    +VP  +     + P    YR + E+    +   
Sbjct: 79  GCSSQTIPYEKQLELKVEQVKDLFKEAEVPTGEFLGIETSPIQWEYRNKMEYTFGDEEKG 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMAT--------IRLEPLLRAK 103
           G+    +    ++   + +D  +        I    ++            +     LR  
Sbjct: 139 GELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFREKGLPFYKIMPRTGYLRYL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154
           + +      ++++ +V L+    +D    E            +L+  +H     +     
Sbjct: 199 VVRKSV---KTEEILVNLVTTTQIDFDLTEFTELIKGLNLKGKLKSIIHTESDALSEAVI 255

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
             K  I    D++ E L      L ++    SF Q N+     +   V          ++
Sbjct: 256 PEKVNILYGDDFITENLL----GLNFKISPFSFFQTNSLGAEKLYSIVRDFMGAADNKVV 311

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG G    + A    +V+ +E+ + +  AA  N   N +NN   +     E  + +
Sbjct: 312 FDLYCGTGTIGQIAAGKASKVIGIELIEEAAMAANENAKLNGLNNCNFIAGDVAEVIKTV 371

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
           +                +   I +DPPRSG+    +  V  +  P I+Y+SCNP +L  D
Sbjct: 372 K---------------DKPDIIILDPPRSGVHPKALDYVIKFNAPQIIYVSCNPKTLVTD 416

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           L +L    + IE+  L D FP T H+E  V L +
Sbjct: 417 LKVLEAKGYEIEKTLLMDMFPNTPHVETVVKLNK 450


>gi|119358501|ref|YP_913145.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266]
 gi|119355850|gb|ABL66721.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 476

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 154/408 (37%), Gaps = 61/408 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSE--PIHYRMRAEFHIW---- 52
              ++   YE Q   K  ++   M     F+ P ++       P+HYR + EF       
Sbjct: 86  GCKMMHIAYEVQKELKRKKIIDAMVHIGGFENPQVKPVMGAVAPLHYRNKIEFSFSARRY 145

Query: 53  -----------HDGDDLYHIMFDQQTKERM-RIDYFMPGSLLINAL-----------MIE 89
                          D           E++  +DY       +N +            + 
Sbjct: 146 LMPGELVLEKPLSSPDFALGFHAPGNFEKVLDVDYCYLAPSSMNEVLALTRSFCLERELS 205

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
             +T      LR  + +    +    Q +V L+      +  R  A  L  A+  ++  I
Sbjct: 206 AYSTRSNTGYLRNLVIRS---SEHRRQLMVNLVTSWHDSELMRSYAEVLSAAMPNQEMTI 262

Query: 150 QLIGRANKTKICLDRD--------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
                  K  + L  +        ++ ERL      L +    NSF Q N+   V + + 
Sbjct: 263 LNNVTTRKNTVALGEEEFLVAGDGFITERLG----KLDFNISANSFFQTNSAQTVLLYDE 318

Query: 202 VLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +L  A   I   + +L+CG G  +L L+ +  +V+ +E+++ SV  AR N A N   +V 
Sbjct: 319 ILRVAGLDIGDTVYDLFCGTGTIALYLSDYCRQVIGLEVSESSVADARKNAALNQREHVL 378

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318
            +++   +             + D      + + I  DPPR+G+    + ++   A   I
Sbjct: 379 FMQVDLND----------HRAMVDALQRHDKPRVIVTDPPRAGMHPKALEVMVRIAPEKI 428

Query: 319 LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +Y+SCNP SL RD S +    + +  L   D FP+T H+E      R+
Sbjct: 429 VYVSCNPASLARDGSEICKGGYRLTSLQPVDMFPHTSHIESVACFERE 476


>gi|148264199|ref|YP_001230905.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
 gi|146397699|gb|ABQ26332.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter uraniireducens
           Rf4]
          Length = 439

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 144/378 (38%), Gaps = 34/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
                   Y  Q+ EK +   +++              I   EP  YR R +  +     
Sbjct: 76  GCNWQHLAYSAQIKEKEEIFAELLWRAGRVERKRILPVIPAQEPYGYRSRIQLKVRFIDG 135

Query: 57  DLYHIMFDQQTKERMRI-DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +   F  ++ + + I +        IN ++ ++   ++  P     + QID       
Sbjct: 136 KPHLGFFRTKSHDVIDIPEICAIAHADINRIISKLRQLLQHLPE-PDTVPQIDVARGDDG 194

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA- 174
            A+V + Y       + E  +     L         I   NK+   L + +  E L+   
Sbjct: 195 SALVIVHYTGAAHIGFSEFLLEQNKMLGFADGI--FIQGGNKSN--LGKVFGIESLSYQI 250

Query: 175 GRTLIYRQIE-------NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
               I             SF+Q N   N+H+++ V    +    + +L+LYCGNGNF++ 
Sbjct: 251 PENFIPGSSPKRLSFGKGSFSQVNYQQNLHLIQLVWNWAELTGKEKVLDLYCGNGNFTIP 310

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA     ++  E    S+  AR N  +N+V N +     +               +K + 
Sbjct: 311 LAGFAQSMVGFEEFGQSINDARQNCESNNVTNAEFYCSDATL------------EVKKLA 358

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERL 344
                F  + +DPPR G  +    +    PH ILY+SC+P +L RD+ IL    + + + 
Sbjct: 359 AAGESFDVVLLDPPRCGAAEVVSRIHAVSPHFILYVSCDPATLARDVDILKKSNYEVVKC 418

Query: 345 ALFDQFPYTRHMECGVLL 362
              D FP T H+E   LL
Sbjct: 419 QPVDMFPQTYHIESVTLL 436


>gi|17231146|ref|NP_487694.1| hypothetical protein alr3654 [Nostoc sp. PCC 7120]
 gi|50401636|sp|Q8YR05|Y3654_ANASP RecName: Full=Uncharacterized RNA methyltransferase alr3654
 gi|17132787|dbj|BAB75353.1| alr3654 [Nostoc sp. PCC 7120]
          Length = 460

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 146/395 (36%), Gaps = 47/395 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
                   YE QL  K  ++ Q +           +  +  +  + YR +A + +     
Sbjct: 84  GCQWQHIDYEYQLIAKRHQVIQALQRIGGFAQPPVDPVLVTASSLGYRNKATYPLDVSAT 143

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104
             +    + + +   + ++        +N L+ ++   I+            +  +R   
Sbjct: 144 GQVQAGYYQKGSHHVVNLNQCPVQDPRLNPLLAQVKQDIQQRDWPIYDEKRHQGQIRHLG 203

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +I   T +    +V    +    +     W +   +L      R  +        +T+ 
Sbjct: 204 LRIGRRTGEILLTLVVKDGNLPGIEQQAQEWLQRYPQLVGVSLNRNPERTNAIFGRETRC 263

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
                Y+ E        L ++   ++F Q        +L  V+ +   +QG   L++ YC
Sbjct: 264 IAGVPYLREIFA----GLEFQVRPDTFFQVFTETAEALL-QVIESQLNLQGHETLIDAYC 318

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +L L++   + + +E+   +V+ A  N   N +NNV+    + ++    M     
Sbjct: 319 GIGTLTLPLSKQVRQAIGLELQPEAVQQAIVNAQHNGINNVEFQVGAVEKLLPKM----- 373

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                           + +DPPR G D   +  + A     I+Y+SC   +L RDL +L 
Sbjct: 374 ----------GIIPDVVLLDPPRKGCDRIVIESLLASKPARIVYVSCKVATLARDLKLLC 423

Query: 337 --TTHTIERLALFDQFPYTRHMECGVLLVRKPSGW 369
              T+TI+R+   D FP T H+E    LV   SG 
Sbjct: 424 TDGTYTIQRIQSADFFPQTSHVEVAAFLVLSQSGK 458


>gi|326798666|ref|YP_004316485.1| RNA methyltransferase, TrmA family [Sphingobacterium sp. 21]
 gi|326549430|gb|ADZ77815.1| RNA methyltransferase, TrmA family [Sphingobacterium sp. 21]
          Length = 476

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 148/404 (36%), Gaps = 51/404 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPI-HYRMRAEFHIWHD-- 54
                   Y  QL  K   +   +      +     +I  S    +YR + E+   +   
Sbjct: 85  GCKWQHMDYRAQLVYKQKSVDNALSRIGKIDTSSMEEILPSAHTVYYRNKLEYTFSNKRW 144

Query: 55  ------GDDLYHIMFDQQTKERMR------IDYFMPGSLLINALMIEMMATIRLEPL--- 99
                      H M        +R      I++        NA+  E+      + +   
Sbjct: 145 LTTEDIASGKEHEMSALGFHVPLRFDKILGIEHCYLQKDPSNAIRNELKQLTIEKGISYY 204

Query: 100 -LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
            LR     L  +   TS +   +V +++     +   +    L++          +I + 
Sbjct: 205 DLRNHEGALRNLMIRTSTTGDLMVVVVFAYPTQEQIVQVMEFLKERFPEISSLQYIINQK 264

Query: 156 N-----KTKICL--DRDYVDERLTVAGRT--LIYRQIENSFTQPNAGINVHMLEWVLAAT 206
                   +I     +D++ E +++  R+  L ++    SF Q N+      L  +    
Sbjct: 265 KNDTIFDQEIITYAGKDHIFEEMSLPNRSVRLRFKIGAKSFYQTNSEQAYE-LYRITKEF 323

Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             ++G   + +LY G G  +  +A    +V+ +E    ++E A+ N + N + N      
Sbjct: 324 ANLKGHELVYDLYTGAGTIANFVALDVKQVIGIEYVPSAIEDAKLNSSINGIENTLFFAG 383

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYIS 322
             K+               +      +   I  DPPR+G+    +  +     P I+Y+S
Sbjct: 384 DMKDVLT-----------PEFTATHGKPDLIITDPPRAGMHPDVIARLLELEAPRIVYVS 432

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           CN  +  RDL++L+  + ++R+   D FP+T+H+E  VLL  K 
Sbjct: 433 CNAATQARDLALLNEKYLVKRIKPVDMFPHTQHVENVVLLELKK 476


>gi|212711299|ref|ZP_03319427.1| hypothetical protein PROVALCAL_02371 [Providencia alcalifaciens DSM
           30120]
 gi|212686028|gb|EEB45556.1| hypothetical protein PROVALCAL_02371 [Providencia alcalifaciens DSM
           30120]
          Length = 443

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 144/362 (39%), Gaps = 28/362 (7%)

Query: 13  QLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
           Q   K   L+ +M       +P + +   +   YR RA   + +     + +M  +QT  
Sbjct: 100 QRESKAQALQHLMKRETGVMLPAISVIGGKEYGYRRRARLGLQYQNKSNHLMMGFRQTQT 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
              + I+        ++ L+  +   +     + +KL  ++ +   +   I+     R L
Sbjct: 160 NTLVDINSCPVLHTELDVLLAPLSTCLNQL-SIASKLGHVELIHGDNGNLILL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
                    RL +   +    I L G  N     L  D       VAG  L +     +F
Sbjct: 215 APVDLSDRKRLLEFAQSHGVTIWLAGD-NGQLQTLQADATLPEYQVAGEILQF--SPANF 271

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  IN  M+   +A       D +L+L+CG GNF+L +AR    V+ VE  +  V  
Sbjct: 272 IQVNGEINQQMVAQAIAWLDLSPEDRVLDLFCGMGNFTLPIARLAKMVVGVEGVENLVTQ 331

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N   N + N      + +E            ++         F  + +DP R+G   
Sbjct: 332 AKNNAQRNSIENAAFYNENLEE------------QIHTQPWAQEGFNKVLLDPARAGAAG 379

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               +++  P  I+Y+SCNP +L RD   +L   + + +L + D FP T H+E   L VR
Sbjct: 380 VMEHLIKLMPEKIVYVSCNPTTLARDSKVLLEGGYQLSQLRMLDMFPQTSHLESMALFVR 439

Query: 365 KP 366
            P
Sbjct: 440 SP 441


>gi|238754498|ref|ZP_04615853.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia ruckeri ATCC
           29473]
 gi|238707327|gb|EEP99689.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia ruckeri ATCC
           29473]
          Length = 419

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 135/351 (38%), Gaps = 27/351 (7%)

Query: 19  DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYF 76
            RL             I       YR RA   + +       +M  +Q  + + + I+  
Sbjct: 91  QRLIARETGVAPEAESIICGPEYGYRRRARLGLCYQSKQHRLVMGFRQVASHDLVAINQC 150

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
                 +  L+  +   +   P ++ +L  ++ + + +   +V     R LD+       
Sbjct: 151 PVLRPELECLLAPLYRCLSALPSVK-RLGHVELVLADNGPLLVL----RHLDNLKSTDRA 205

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L          I L    N     L+R   DE        L        F Q N  +N 
Sbjct: 206 ALLAFSLQENVAIYLAPDENH----LERRVGDEPY-YQIDGLRLAFNPRDFIQVNPTVNQ 260

Query: 197 HMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            M+   L          +L+L+CG GNF+L LARH  +V+ +E     V   +YN   N 
Sbjct: 261 KMVAQALEWLDVHPDERVLDLFCGMGNFTLPLARHARQVVGIEGVATLVANGQYNAQINS 320

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV     + +E             +      +  F  I +DP R+G     + +V+  
Sbjct: 321 LSNVSFFHENLEE------------DIDKQPWAAQGFDKILLDPARAGAAGVMLHIVKLA 368

Query: 316 P-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           P  ++Y+SCNP +L RD   +L   + + R+ + D FP+T H+E   L +R
Sbjct: 369 PKRVVYVSCNPTTLARDSHVLLDAGYRLARVRMLDMFPHTGHLESMALFIR 419


>gi|281425818|ref|ZP_06256731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302]
 gi|281400079|gb|EFB30910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302]
          Length = 479

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 141/405 (34%), Gaps = 64/405 (15%)

Query: 9   QYEQQLAEKVDRLRQMML---AFQVPNLQIFRSE--PIHYRMRAEFHI----WHDGDDLY 59
            YE+QL  K  ++   +       +P             YR + EF      W+  D++ 
Sbjct: 91  PYEEQLKAKQQQVYDQLTRIGKIALPEFNPIMGSVKTKEYRNKLEFGCANKRWYTKDEIA 150

Query: 60  HIMFDQQTKE------------------RMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
            +   ++  E                     I+       L N +  E+    + + L  
Sbjct: 151 AMPPREEGTEGNLNESAIGFHITGAFDKIYPIEKCWLMDDLHNQIRNEINRYAKEQDLAF 210

Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  +    S + + ++ + +H    +   E A+ L   +     QI  +  
Sbjct: 211 YDIRAQHGLLRDLMMRNSNTGEFMLLVQFHYD-KEGDEEKAMALLQHIADAFPQITSLIY 269

Query: 155 ANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
            +  K                D++ E +      L ++    SF Q N     H+     
Sbjct: 270 VDNQKGNDTFGDLELTTFKGTDFIYETM----EDLKFKVGPKSFYQTNTEQAYHLYSVAR 325

Query: 204 AATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A       +L+ +LY G G  +  +A    +V+ +E    ++E A+ N   N ++N    
Sbjct: 326 AFAALTGKELVYDLYTGTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSKVNGIDNTLFY 385

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320
               K                D      R   I  DPPR+G+    V ++   A   ++Y
Sbjct: 386 AGDMKNILTD-----------DFIHEHGRPDVIITDPPRAGMHPDVVQVILNAAPKRVVY 434

Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +SCNP +  RDL ++   + +  +   D FP+T H+E  VL  R+
Sbjct: 435 VSCNPATQARDLQLMDADYKVTAVQPVDMFPHTPHVENVVLQERR 479


>gi|268318102|ref|YP_003291821.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252]
 gi|262335636|gb|ACY49433.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252]
          Length = 466

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 136/392 (34%), Gaps = 53/392 (13%)

Query: 9   QYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEP--IHYRMRAEFHIWHDG-------- 55
           +YE QL  K   + + +     F+   ++     P    YR + EF    D         
Sbjct: 87  RYEAQLEAKRQSVYEALVHHGGFEDVEVRPTLPSPRLYGYRNKMEFSFSADRWLTPEEIA 146

Query: 56  -DDLYHIMFDQQTK------ERMRIDYF----MPGSLLINALM-------IEMMATIRLE 97
                   F           + + ++           L+N L         E     R E
Sbjct: 147 SGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPITVRLLNELRAFFKAKGWEPWDIRRHE 206

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             LR  + +     +++ + +V L+  R  +    E    L++        +  I  +  
Sbjct: 207 GYLRHLVIRTG---TRTGEVMVNLVTSRYDEARMAELGAFLQEQFPEVTTLVNTIN-SRP 262

Query: 158 TKICLDR----DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
            ++         +    +        +    ++F Q N      + E           DL
Sbjct: 263 AQVSYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAERLYEVARELAALRPDDL 322

Query: 214 L-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LYCG G  S+ +A H   V+ VE+   +VE AR N AAN + N   V     E    
Sbjct: 323 VYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITNCTFVAGDLLEVLT- 381

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                             R   + VDPPR+G+    V  +        +Y+SCNP +  R
Sbjct: 382 ----------PAFVRTHGRPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNPQTQAR 431

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           DL +L   + IE +   D FP+T H+E  V L
Sbjct: 432 DLKLLRDLYRIEAVQPVDLFPHTDHVESVVAL 463


>gi|149910150|ref|ZP_01898796.1| RNA methyltransferase, TrmA family [Moritella sp. PE36]
 gi|149806736|gb|EDM66700.1| RNA methyltransferase, TrmA family [Moritella sp. PE36]
          Length = 444

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 144/373 (38%), Gaps = 29/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
             +L I   E Q   K   L  ++  F   +   F     S+P  YR  A   +  D   
Sbjct: 90  GCSLQILDSEVQADYKQTALFSLLQHFSKNDDINFAEPILSQPWQYRRTARLSVMFDRKA 149

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   ++ +K  + I+        ++ L+  +   +     +R  L  I+  +  S 
Sbjct: 150 KQLVFGFRERNSKSLVAINECPVLEPALSVLIQPLRQLLATL-TVRRDLGHIELFSVDSG 208

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-KICLDRDYVDERLTVA 174
              +     R+L     +    L+      +  I L    +   K+  D      +L   
Sbjct: 209 VICL----FRILKPLKDKDQDLLQAFASEHQLSIYLQPEPDSVVKLTPDIPAAWYQLADG 264

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              L +     +F Q N  +N  M++  +   +    D +L+L+CG GNFSL LAR    
Sbjct: 265 EFKLSF--TPGNFIQVNPVVNNQMVKQAIDWLELTPEDRVLDLFCGGGNFSLPLARLCHS 322

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE     V  A+ N  AN+V N +  +              +F++L         F 
Sbjct: 323 VVGVEGVDGMVRQAQANAIANNVTNAQFYQADLSS---------DFSKLP---WAKTSFD 370

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
            + +DP R+G  +    + +     I+Y+SCNP +L RD  +L    + + RL + D FP
Sbjct: 371 KVLLDPARAGAAETVQYLHKLKVKRIVYVSCNPATLARDSKLLMEKHYKLTRLGMIDMFP 430

Query: 352 YTRHMECGVLLVR 364
            T H+E   L  R
Sbjct: 431 QTGHVESMALFER 443


>gi|16761736|ref|NP_457353.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143220|ref|NP_806562.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213163047|ref|ZP_03348757.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213424910|ref|ZP_03357660.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581488|ref|ZP_03363314.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213648277|ref|ZP_03378330.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289829826|ref|ZP_06547341.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|20140067|sp|Q8Z446|RUMA_SALTI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|25322739|pir||AH0860 probable RNA methyltransferase (EC 2.1.1.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504037|emb|CAD06071.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138853|gb|AAO70422.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 431

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 141/356 (39%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +V ++    S    YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM-KHEVNDIIAGAS--WGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLTFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE  +  VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVQALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 375 IIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 430


>gi|146312878|ref|YP_001177952.1| 23S rRNA 5-methyluridine methyltransferase [Enterobacter sp. 638]
 gi|226725379|sp|A4WDX1|RUMA_ENT38 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|145319754|gb|ABP61901.1| 23S rRNA m(5)U-1939 methyltransferase [Enterobacter sp. 638]
          Length = 431

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 78/335 (23%), Positives = 138/335 (41%), Gaps = 27/335 (8%)

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMM 91
           +I   EP  YR RA   + ++       M  ++  + + + +         + AL+  + 
Sbjct: 118 EIISGEPWGYRRRARLSLSYEPKTQKLAMGFRKAASSDIVDVKQCPVLVPHLEALLPHLR 177

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
             +      RA L  ++ + + +   +V L +   L    RE   R     H+ +  + L
Sbjct: 178 NCLSDLQGARA-LGHVELVLADNGPLMV-LRHTAPLSAPDREKLERFS---HSHELTLFL 232

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
             ++   +     D            L        F Q N G+N  M+   +        
Sbjct: 233 APQSEILERVSGDDP-----WYLSDGLRLTFSPRDFIQVNDGVNQQMVAKAIEWLDVQPD 287

Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D +L+L+CG GNF+L LA+    V+ VE     VE  + N   N ++NV     + +E  
Sbjct: 288 DRVLDLFCGMGNFTLPLAQRAASVVGVEGVNALVEKGQQNAHHNALDNVTFFHENLEE-- 345

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329
                      +       + F  + +DP R+G       +++  P  ++Y+SCNP +L 
Sbjct: 346 ----------DVTQQPWAQHGFDKVLLDPARAGAPGVMQHIIKLAPKRVVYVSCNPATLA 395

Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           RD  ++LS  + I+RLA+ D FP+T H+E  VL  
Sbjct: 396 RDSEALLSAGYQIQRLAMLDMFPHTGHLESMVLFQ 430


>gi|269140060|ref|YP_003296761.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267985721|gb|ACY85550.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304559888|gb|ADM42552.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Edwardsiella tarda
           FL6-60]
          Length = 420

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 139/358 (38%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TK 68
           Q   K   L+++M          Q+   EP  YR RA F +  +      ++  +Q  + 
Sbjct: 82  QQQSKSQALQRLMARETGVEIAPQVIAGEPYGYRRRARFGLQFNAKTQRVVLGFRQAASN 141

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           + + +      +  + AL++ +   +      R +L  ++   + +   +V     R LD
Sbjct: 142 DLVALKACPVLAPALEALLLPLGECLSALRA-RRRLGHLELALADNGPLMVL----RHLD 196

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
                    L      R   + L       ++  +  Y           +        F 
Sbjct: 197 PLALSDREALSAFARQRGLSLYLSDGGAPQRLLGEAPY------YQIDGIRLDFNPQDFI 250

Query: 189 QPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q NA +N  M+E  LA         +L+L+CG GNF+L LAR   RV+ VE     V  A
Sbjct: 251 QVNAAVNAQMVEQALAWLDVRADERVLDLFCGMGNFTLPLARRAQRVVGVEGVPELVATA 310

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + N   N ++NV+    + +E                    +  F  I +DP R+G    
Sbjct: 311 QNNARNNGLSNVEFFHQNLEEDVTRQA------------WAAQGFDKILLDPARAGAPGV 358

Query: 308 TVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363
              +V   P  ++Y+SCNP +L RD   +L   + + RL + D FP+T H+E   L  
Sbjct: 359 MQHIVCLAPRRVVYVSCNPTTLARDSKTLLQGGYRLTRLCMLDMFPHTGHLESMALFE 416


>gi|170727692|ref|YP_001761718.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|226725394|sp|B1KPU0|RUMA_SHEWM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|169813039|gb|ACA87623.1| RNA methyltransferase, TrmA family [Shewanella woodyi ATCC 51908]
          Length = 443

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 149/371 (40%), Gaps = 29/371 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFH-IWHDGD 56
              L     E+Q   K   L  +M        +        E  HYR RA     +H   
Sbjct: 91  GCDLQHLSLEKQRLHKESALVSLMAKLSHTEAEALVPAIIGEQWHYRRRARLATFYHQET 150

Query: 57  DLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
               + F  Q+ KE + I      +  ++ L+  +   +      RA L  ++ +   + 
Sbjct: 151 KRTTLGFRAQSSKEVIDISSCPVLAKSLSELISPLSKLLNQLASRRA-LGHVELIDVDNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           Q +V     R   +   +   +L     A+++++ LI + N+ ++ + +   +       
Sbjct: 210 QFVVV----RATKELSDKDKEKLLSF--AQEHKVNLIVQGNEGELLVIKGPKELPFYTLN 263

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             +       +F Q N  IN  M++  +          +L+L+CG GNFSL LA+    V
Sbjct: 264 SDIKLSFTPGNFVQVNGEINRAMVDQAVQWLDVKADERVLDLFCGVGNFSLPLAKSGAEV 323

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  AR N   + +++V        + +  + +E    ++            
Sbjct: 324 IGVEGVPEMVAQARINAKQSDLSDVTFFH---TDLSADLSKEPWLGKV----------DK 370

Query: 295 IFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352
           + +DP R+G  ++   + +  P  I+Y+SC+P SL RD   +L   + +++L L D FP 
Sbjct: 371 LLLDPARAGAFESLQWLKKMKPKSIVYVSCDPSSLARDSEPLLKHGYKLKKLGLVDMFPQ 430

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 431 THHIEAMALFE 441


>gi|305666421|ref|YP_003862708.1| putative RNA methyltransferase [Maribacter sp. HTCC2170]
 gi|88708684|gb|EAR00919.1| putative RNA methyltransferase [Maribacter sp. HTCC2170]
          Length = 469

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 74/401 (18%), Positives = 140/401 (34%), Gaps = 54/401 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQ--IFRSEPIHYRMRAEFHI----W 52
                   Y  QL  K   +   +       +P L+  +   E   YR + EF      W
Sbjct: 84  GCKWQHMDYGHQLFYKQKEVENNLRRIGHLDLPELEPILGSKEQYFYRNKMEFSFSDSRW 143

Query: 53  HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLE---- 97
              D++   +  ++             + + I      +   N + + +           
Sbjct: 144 LTLDEIQSDVEIKEKNALGFHIPGMWDKILDIKKCHLQADPSNEIRLAVKDFAIKNEITF 203

Query: 98  --PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
             P  +  + +   + + S   I+ LI         RE  +       ++   +Q +   
Sbjct: 204 FNPRNQYGMLRTLMIRTASTGEIMVLIQFYEDSKEKRELLLNHLAKTFSQITSLQYVINQ 263

Query: 156 NKTKICL--------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
            +              RD++ E +      L ++    SF Q N+      L  V     
Sbjct: 264 KQNDTIYDQEIVCFAGRDHIIEEM----EGLQFKINAKSFYQTNSEQAYE-LYKVARDFA 318

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           GI G+  + +LY G G  +  +++   +V+ +E    ++E A+ N A N ++NV      
Sbjct: 319 GITGNELVYDLYTGTGTIAQFVSKKAKKVIGIESVPEAIEDAKANAANNKIDNVDFFVGD 378

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
            K               +D          I  DPPR G+    V  +       ++Y+SC
Sbjct: 379 MKNVFN-----------EDFINAHGSPDIIITDPPRDGMHKDVVQQLLNIGAKKVVYVSC 427

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           N  +  RDL+++   + + ++   D FP T H+E  VLL +
Sbjct: 428 NSATQARDLALMKHMYKVSKVQAVDMFPQTHHVENVVLLEK 468


>gi|237729748|ref|ZP_04560229.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2]
 gi|226908354|gb|EEH94272.1| 23S rRNA 5-methyluridine methyltransferase [Citrobacter sp. 30_2]
          Length = 432

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/357 (23%), Positives = 142/357 (39%), Gaps = 30/357 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHI--WHDGDDLYHIMFDQQTKER 70
           Q   K   L ++M   +     +    P  YR RA   +        L        + + 
Sbjct: 100 QQRSKSAALSRLM---KCEVSDVIADAPWGYRRRARLSLNYRPKEQKLQMGFRKSGSSDI 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+  + A +     LR  L  ++ + + S   ++ L +   L  A
Sbjct: 157 IDVKQCPILVPQLEALLPHLRACLESLQGLRH-LGHVELVQAGSGTLMI-LRHTAPLSAA 214

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            +E   +L    H++   + L  ++      L+    +E        L        F Q 
Sbjct: 215 DKE---KLECFSHSQGLSLFLAPQSE----ILESIS-EESPWYDSNGLRLTFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N G+N  M+   L       +  +L+L+CG GNF+L LA     V+ VE     VE  R 
Sbjct: 267 NEGVNQQMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRE 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N ++NV     + +E             +         F  + +DP R+G      
Sbjct: 327 NALNNGLHNVTFFHENLEE------------DVTRQPWAKNGFDKVLLDPARAGAAGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +++  P  ++Y+SCNP +L RD  ++L+  + I RLA+ D FP+T H+E  VL  R
Sbjct: 375 HIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRRLAMLDMFPHTGHLESMVLFER 431


>gi|295099490|emb|CBK88579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium
           cylindroides T2-87]
          Length = 485

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 147/389 (37%), Gaps = 39/389 (10%)

Query: 2   SGTLLIDQ-YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDD 57
            G   + +  E+Q + K  ++ ++     +       +      HYR +       +   
Sbjct: 10  GGCAYLSKSMEEQASIKKAQVEELAQRNHLKLRVGDVLTAKNTTHYRNKVIVGFAKNKGK 69

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQ 106
           +Y  ++  ++   +     M    ++N            + IE+        LLR  L +
Sbjct: 70  VYSGLYAAKSHRVVACQNCMMHPDIVNKIIVKIEELVSSMKIELYNEKTRTGLLRHVLIR 129

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             +   ++D+ +V  +  + +  + R     L       K  +Q +     T I    + 
Sbjct: 130 YAH---KTDEVMVVFVTSKKMFPSRRNLVNALVKEFKEIKTIVQNVNP-RNTSIVQQDET 185

Query: 166 ---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
              Y D  +T     L       SF Q ++     + +         + D +L+ YCG G
Sbjct: 186 ILLYGDGMITDELCGLKISFSNRSFYQIHSEQCEVLYDMARKMCDLTKTDTVLDTYCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LA     V  VEI   ++E A+ N   N++ N K + M S  +    ++ R    
Sbjct: 246 TIGLTLASSCKSVTGVEINPDAIENAKLNAKQNNIKNAKFISMDSTRYMMEAKKFRN--- 302

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STT 338
                     +  I +DPPR+G     +    +     ILYISC+P ++ RDL +     
Sbjct: 303 ---------HYDVIILDPPRAGTTKDFIEASTSLQPKKILYISCDPKTMMRDLVMFRQKG 353

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +   ++ L D FP+T H+E  VLL  K +
Sbjct: 354 YMTNKIELVDMFPFTEHIETVVLLSHKKA 382


>gi|297620448|ref|YP_003708585.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
           86-1044]
 gi|297375749|gb|ADI37579.1| 23S rRNA (Uracil-5-)-methyltransferase [Waddlia chondrophila WSU
           86-1044]
          Length = 482

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/401 (20%), Positives = 149/401 (37%), Gaps = 57/401 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHD--GDDLYHIM 62
            Y +QL EK   ++         ++ +++      P +YR + EF    D  G+    +M
Sbjct: 94  PYSKQLKEKELLIQHQFGHLLTDSVDLYQIVPCDTPWNYRNKMEFSFSTDLEGNKYLGLM 153

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLT 111
            DQ   + M +      +      +  +        L           LR    +    T
Sbjct: 154 MDQGRGKVMDLQECHLTNPWFIETVSAVRDWWEESELEAYHSYKDLGSLRTLTVREGIRT 213

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIR-----LRDALHARKYQIQLIGRANKTKI------ 160
                 +V L      D A ++  +      +RDA+       +L       +I      
Sbjct: 214 GDR---MVNLTVSGNPDFALKKHHLEGFVAFVRDAIEPVDPDKRLSIFLTIQQIKKGYPT 270

Query: 161 ------CLDRDYVDERLTV------AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATK 207
                     D + E L +          L++     +F QPN      +    L  A  
Sbjct: 271 QFYEMHLYGADTIREELHIQMLTEGGLEPLLFHISPAAFFQPNTLQAEKLYSLALELAQI 330

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             +  + +LYCG G   +  A+   +V+ VE++  S   AR+N   N + N+ I+  + +
Sbjct: 331 SKEQVVYDLYCGTGTLGICAAKRAKQVVGVELSPESAHDARHNAKENRIENLTILTGAVR 390

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNP 325
              + ++ +  F               + VDPPR+GLD   +  +     P I+Y+SCNP
Sbjct: 391 RVLEEIKEKELFP----------DPDVVMVDPPRAGLDPHAIKHLLELGPPKIVYVSCNP 440

Query: 326 DSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +   ++   L   + ++ +   DQFP T H+E  VLL +K
Sbjct: 441 ATQVENVKEFLKDGYVLKAVQPVDQFPQTVHIENIVLLAKK 481


>gi|114320510|ref|YP_742193.1| 23S rRNA 5-methyluridine methyltransferase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122311777|sp|Q0A8Y4|RUMA_ALHEH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|114226904|gb|ABI56703.1| 23S rRNA m(5)U-1939 methyltransferase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 445

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 135/376 (35%), Gaps = 30/376 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L     E+Q+  K   L +          +   +     P  YR +A   + H    
Sbjct: 85  GCSLQHLTPERQVELKQSVLMEQFHHMGGVQPERVLAPLTGAPWGYRRKARLAVKHVPRK 144

Query: 58  LYHIMFDQQTKERM--RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              ++  ++        +D        +   + E+   I     +  ++ QI+       
Sbjct: 145 GGVLVGFREKHSPFVAEMDRCPVLDPRVGERLTELGRLIEGL-SIPDRVPQIEVALGDET 203

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R L         RL          +      N+  + L  D V  RL  A 
Sbjct: 204 GALV----FRNLAPLTAADLNRLAGFARDSGLAVY-QQPGNEATMALVHDPVGRRLDYAL 258

Query: 176 RTLIYR--QIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD 232
                R       FTQ NA IN  M++  L       G  +L+L+CG GNF+L LAR   
Sbjct: 259 PGHGVRLGFRPGDFTQVNAEINRAMVDQALDLLAVEPGQRVLDLFCGLGNFTLPLARRAS 318

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE A+  VE  R N   N ++NV+                       D    +  F
Sbjct: 319 EVVGVEGAEALVERGRENALRNGLDNVRFYGADLTLAA------------ADQPWATGGF 366

Query: 293 KTIFVDPPRSGLDDAT-VGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
             + +DPPRSG  +   +        I+Y+SC P +L RD   L     + +    + D 
Sbjct: 367 DRVLLDPPRSGAFEVLGLVAALGPKRIVYVSCGPATLARDAGELVHRHGYRLTAAGVMDM 426

Query: 350 FPYTRHMECGVLLVRK 365
           FP+T H+E   +  R+
Sbjct: 427 FPHTAHVESMAVFQRE 442


>gi|297587406|ref|ZP_06946051.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC
           53516]
 gi|297575387|gb|EFH94106.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC
           53516]
          Length = 442

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 144/387 (37%), Gaps = 43/387 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAE--FHIWHDGDD 57
            G +    +Y+ +   K   L ++       ++    S     YR + E  F     G  
Sbjct: 76  GGCIYQKLEYDVECDLKKKTLTELYKDIYDEDITFHPSPILQGYRNKMEYTFGDSVKGGP 135

Query: 58  LYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLF 105
           L   +  +    E              N +   +              I+   LLR  + 
Sbjct: 136 LVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHFII 195

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           +  +   +    +VT      ++D     ++   R+    H     I      +K ++  
Sbjct: 196 RKSFSEDEYMINLVTTSDEFDVNDFVEFAKQIDNRIVSIYHTINDNISDAVIVDKLELLY 255

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNG 221
            ++Y+ E++      L +R    SF QPN      +    L     + G ++ +LYCG G
Sbjct: 256 GKEYLTEKI----NGLEFRISPFSFFQPNPAQAEQIYNRALELAGDLSGKNVYDLYCGTG 311

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             + + A+  + V+ VEI   +VE A+ N   N + N + +      F + + ++     
Sbjct: 312 TIAQIFAKKAESVIGVEIVAEAVEKAQENAELNGLTNTEFICDDCLNFMEKVEKK----- 366

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTT 338
                        + +DPPR G+    +  ++   P   +YISCNP +   DL   +   
Sbjct: 367 -----------DVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKG 415

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + I+ L  FDQFP T H E  VLL +K
Sbjct: 416 YKIKSLEFFDQFPRTYHCEAVVLLEKK 442


>gi|254413176|ref|ZP_05026947.1| 23S rRNA (uracil-5-)-methyltransferase [Microcoleus chthonoplastes
           PCC 7420]
 gi|196179796|gb|EDX74789.1| 23S rRNA (uracil-5-)-methyltransferase [Microcoleus chthonoplastes
           PCC 7420]
          Length = 468

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 140/383 (36%), Gaps = 49/383 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHIWHDGDDLYH-IM 62
           QY++ +  K + + Q +       +++I        P+ YR +A + +            
Sbjct: 105 QYQRSV--KENLIEQALTRIGGFNSIEIAPILSADSPLAYRNKATYPMRRSSSGQVQAGY 162

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLT 111
           + + T + + ++        +N L+ ++   I+ +             LR    +I   T
Sbjct: 163 YQKGTHQLINLNQCPVQDDRLNPLLAQIKQDIQQQGWSIYNERRHQGRLRHLSLRIGRRT 222

Query: 112 SQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
            +    +VT    L         W +    L             +    +T   L + Y+
Sbjct: 223 GEMLLTLVTTDANLTNLETQAQTWLDRYPNLVGVCVNVNPHRTNVIFGVQTHCVLGQPYL 282

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
            E        L ++   ++F Q N      +   V+     +QG   L++ YCG G F+L
Sbjct: 283 GEIFA----DLEFQLRPDTFFQVNTEAAEALFN-VIRQKLALQGTEYLVDAYCGIGTFTL 337

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA+   + L +E+   +VE A+ N   N + NVK    + +     +            
Sbjct: 338 PLAKQVHQALGIEVQGTAVEQAQINAQINGITNVKFETGTVETLLPQL------------ 385

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS--TTHTI 341
                    + +DPPR G +   +  +       ++YISC P +L RDL  L     + +
Sbjct: 386 ---GITPDIVLLDPPRQGCNPQVIDTLLSVMPQRLVYISCKPATLARDLKRLCHLGGYQL 442

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
             +   D F  T H+EC   L +
Sbjct: 443 THVQPADFFSQTPHVECAAFLEK 465


>gi|298208283|ref|YP_003716462.1| putative RNA methyltransferase [Croceibacter atlanticus HTCC2559]
 gi|83848204|gb|EAP86074.1| putative RNA methyltransferase [Croceibacter atlanticus HTCC2559]
          Length = 470

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 128/391 (32%), Gaps = 48/391 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFH-------------- 50
           YE QLA K + +   +              +   +   YR + EF               
Sbjct: 93  YEHQLAFKENEVINNLKRIGKVELPEITPILGSEDIYFYRNKMEFSFSNNRWMTLDEIKS 152

Query: 51  -IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRA 102
            +     D           + + I          NA+   +        L          
Sbjct: 153 DVEITDKDALGFHIPGMWDKILDIKKCHLQEDPSNAIRNSVKEFALKHNLDFFDVRKQEG 212

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            L  +   T+ + + +V LI     D   RE  +            +Q +          
Sbjct: 213 LLRTLMIRTASTGEIMV-LIQFYKDDKEQRELLLDYIAETFPEITSLQYVINDKGNDTIY 271

Query: 163 DRDYVDER----LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
           D++ +       +      L ++    SF Q N+    + L  +      + GD  + +L
Sbjct: 272 DQNVICYTGRDHIFEEMEGLKFKINAKSFYQTNSKQAYN-LYKITREFADLSGDELVYDL 330

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  +  +A+   +V+ +E    ++E A+ N   N +NNV       K         
Sbjct: 331 YTGTGTIAQFVAKKAKKVVGIESVPEAIEDAKKNAQFNEINNVDFFAGDMKHVFS----- 385

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
                 ++      +   I  DPPR G+    V  +       I+Y+SCN  +  RDL +
Sbjct: 386 ------QEFIEEHGQPDIIITDPPRDGMHKDVVAQILNIKPKRIVYVSCNSATQARDLEL 439

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++  + + +    D FP T H+E  V L  +
Sbjct: 440 MNAYYKVTKTQAVDMFPQTHHVENVVCLELR 470


>gi|161501989|ref|YP_001569101.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863336|gb|ABX19959.1| hypothetical protein SARI_00005 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 431

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/356 (23%), Positives = 138/356 (38%), Gaps = 29/356 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +     I    P  YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM---KHEVNDIIAGAPWGYRRRARLSLNCLSDKTLQMGFRKAGSNDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + +   ++ L +   L  A 
Sbjct: 157 NVEQCPILAPQLEALLPRIRACLTSLHGTRH-LGHVELVQAGNGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSEILESVTG-----ETPWYDSHGLRLAFSPRDFIQVN 266

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE     VE  R N
Sbjct: 267 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATSAASVVGVEGVPALVEKGREN 326

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 327 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 374

Query: 311 MVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++  P  ++Y+SCNP +L RD   L +  +   RLA+ D FP+T H+E  VL VR
Sbjct: 375 IIKLKPIRVVYVSCNPATLARDSEALVNAGYEATRLAMLDMFPHTGHLESMVLFVR 430


>gi|319937265|ref|ZP_08011672.1| hypothetical protein HMPREF9488_02507 [Coprobacillus sp. 29_1]
 gi|319807631|gb|EFW04224.1| hypothetical protein HMPREF9488_02507 [Coprobacillus sp. 29_1]
          Length = 379

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 146/383 (38%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL +K    +++   F V  +  I    P  YR +             +
Sbjct: 11  SCQYLDMDYSQQLIKKQKYCQKLFQKFPVQVHSVIGMQNPFEYRNKVIIAF---NQRYEY 67

Query: 61  IMFDQQTKERMRIDYFMPGS-------LLINALMIEMMATIRLEPLLRAKLFQIDYLTS- 112
            ++++ +   + I   M          L I +L+ +   +I      +  L  +    + 
Sbjct: 68  GLYEEGSHRIVPIQQCMLHDQETHHILLKIQSLLKKYRTSIYDHQRHKGFLKHVLIRRAV 127

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRD 165
           Q++Q +V L+    +    +     L     + K  +  + +       + + K+   + 
Sbjct: 128 QTNQTLVALVVTEPMFKGSKNFCSELVKTCPSVKTVVLNVNKRQTSIVLSQQEKVLYGKG 187

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFS 224
           ++ + L      L ++    SF Q N      + + V           +L+ YCG G   
Sbjct: 188 FIVDELC----GLTFKISAQSFYQINHEQCTRLYQKVSDLLEVKENQTVLDTYCGIGTIG 243

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           +++A    +V+ VE+ + + + A  N   N +NN+      + EF + M  +R       
Sbjct: 244 MMIASRVSQVIGVELNQEAYKDAVNNAKMNKINNIHFYNQDATEFMKDMANQR------- 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS-ILSTTHTI 341
                 +   + +DPPR+G     V  +       ++Y+SC+P +  RDL       +  
Sbjct: 297 -----TQIDCVIMDPPRAGSTKEFVQAIHILQPQQVIYVSCDPVTQARDLQWFWDIGYQT 351

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD FP T+ +E  + L +
Sbjct: 352 QDIYPFDMFPQTQAIETVICLTK 374


>gi|332521493|ref|ZP_08397947.1| RNA methyltransferase, TrmA family [Lacinutrix algicola 5H-3-7-4]
 gi|332042892|gb|EGI79091.1| RNA methyltransferase, TrmA family [Lacinutrix algicola 5H-3-7-4]
          Length = 470

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 142/390 (36%), Gaps = 46/390 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIW------------ 52
           YE QL  K   +   ++             +  +E  +YR + EF               
Sbjct: 93  YEHQLFYKQKEVTNNLVRIGHIELPDVTPILGAAEQYYYRNKMEFSFSDSRWLTLEEIQS 152

Query: 53  -HDGDDLYHIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAK 103
             D  D   + F       + + ++     +   NA+   + A      L       +  
Sbjct: 153 DKDLGDRNALGFHIPGMWDKILDLNTCHLQADPSNAIRNSIKAFAVKNDLEFFNTRNQTG 212

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           L +   + + +   I+ L+     D A R+  +        +   +Q +          D
Sbjct: 213 LLRTLMIRTSTTGDIMVLVQFFKEDKAKRKLLLDFISEEFPQVTSLQYVINGKANDTIYD 272

Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217
           ++ +    ++ +      L ++    SF Q N+      L  +     G++GD  + +LY
Sbjct: 273 QEVICYKGNDHIFEEMEGLKFKINAKSFYQTNSKQAYE-LYKLTRTFAGLEGDELVYDLY 331

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G  +  +A+   +V+ VE    ++ AA+ N   N ++NV       K          
Sbjct: 332 TGTGTIAQFVAKQAKKVVGVEAVPDAITAAKENAQLNGIDNVSFFVGDMKNVFN------ 385

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                ++      +   I  DPPR G+    V  +   A   ++Y+SCN  +  RDL ++
Sbjct: 386 -----QEFIETHGQPDVIITDPPRDGMHKDVVKQILNIAPQKVVYVSCNSATQARDLQLM 440

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + + ++   D FP T H+E  VLL ++
Sbjct: 441 DAMYKVTKVQAVDMFPQTFHVENIVLLEKR 470


>gi|262041526|ref|ZP_06014723.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041087|gb|EEW42161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 434

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 135/369 (36%), Gaps = 30/369 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
                      Q   K   L ++M         +    P  YR RA   + +        
Sbjct: 89  GCQQQHASVPLQQQSKRAALGRLMKR---EIDDVIAGAPWGYRRRARLSLNYQPKTQQLQ 145

Query: 62  MFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           M  +Q   K  + +         + AL+  +   +     LR  L  ++ + + +   +V
Sbjct: 146 MGFRQANAKAIVDVVQCPVLVPQLEALLPAVRECLSALSALRH-LGHVELVQADNGPLMV 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
             + H     A      +L          + L  ++   +         E        L 
Sbjct: 205 --LRHTAALPAT--DREKLERFSQTHGLSLYLAPQSEILEHIHG-----EAPWYTSDGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q N G+N  M+   L        D +L+L+CG GNF+L LA     V+ VE
Sbjct: 256 LVFSPRDFIQVNDGVNQQMVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVE 315

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE  R N A N ++NV     + +E                     + F  + +D
Sbjct: 316 GVPALVEKGRENSARNGLSNVTFFHENLEEDVTRQA------------WAKHGFDKVLLD 363

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +++  P  ++Y+SCNP +L RD   +L   + I+RLA+ D FP+T H+
Sbjct: 364 PARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHL 423

Query: 357 ECGVLLVRK 365
           E  VL  R+
Sbjct: 424 ESMVLFERR 432


>gi|166366309|ref|YP_001658582.1| RNA methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166088682|dbj|BAG03390.1| probable RNA methyltransferase [Microcystis aeruginosa NIES-843]
          Length = 455

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 148/382 (38%), Gaps = 47/382 (12%)

Query: 13  QLAEKVDRLRQMMLAFQ-VPNLQIFRS----EPIHYRMRAEFHIWHDG-DDLYHIMFDQQ 66
           QL  K +++++++       +  ++       P+ YR +A + +      ++    + + 
Sbjct: 90  QLQVKKEQVQEVLTRIGGFTDPLVYPPLTGNSPLAYRNKATYPLGFSPTGNVQAGYYRRG 149

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQSD 115
           +   + ++        +N  + E+   I+ +             LR    +I   T +  
Sbjct: 150 SHHLINLNQCPIQDQALNPFLAEIKQDIQGQGWSIYDEKTHQGQLRHLSLRIGRHTGEIL 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKICLDRDYVDERL 171
             +++   +    +A  +  +     L                  +T     RDY+ E+ 
Sbjct: 210 LTLISTDNNLQGIEAQAQQWLAKYANLVGVTVNYHPERGNAIFGAQTTTIAGRDYITEKF 269

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
                 L Y+   ++F Q N      +   V+     ++G+  L++ YCG G F+L LA+
Sbjct: 270 A----GLTYQLAADTFFQVNTEAAEALFA-VICQKLDLKGEEILIDAYCGIGTFTLPLAK 324

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ +E    S++ A+ N   N++ N   +  + ++    +               +
Sbjct: 325 RVKEVIGLESYSFSLDRAKINAQLNNITNTTFILGAVEKTLPQL---------------T 369

Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT--HTIERLA 345
            +   I +DPPR G D + +  +       I+YISC   +L RDL  L  T  + +  + 
Sbjct: 370 VKPDIILLDPPRKGCDRSVLDSLLRLQSQRIVYISCQSATLARDLQYLCKTGDYQLLEVQ 429

Query: 346 LFDQFPYTRHMECGVLLVRKPS 367
             D FP T H+EC   L +K +
Sbjct: 430 TADFFPQTPHVECAAFLRQKTA 451


>gi|303234202|ref|ZP_07320848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           BVS033A4]
 gi|302494743|gb|EFL54503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           BVS033A4]
          Length = 442

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 144/387 (37%), Gaps = 43/387 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAEFHIW---HDGD 56
            G +    +Y+ +   K   L ++       ++    S     YR + E+        G 
Sbjct: 76  GGCIYQKLEYDVECDLKKKTLTELYKDIYDEDITFHPSPILQGYRNKMEYTFGDSVKGGP 135

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKLF 105
            +  +    +  E              N +   +              I+   LLR  + 
Sbjct: 136 LVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHFII 195

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           +  +   +    +VT      ++D     ++   R+    H     I      +K ++  
Sbjct: 196 RKSFSEDEYMINLVTTSDKFDVNDFVEFAKQIDNRIVSIYHTINDNISDAVIVDKLELLY 255

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNG 221
            ++Y+ E++      L +R    SF QPN      +    L     + G ++ +LYCG G
Sbjct: 256 GKEYLTEKI----NGLEFRISPFSFFQPNPAQAEQIYNRALELAGDLSGKNVYDLYCGTG 311

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             + + A+  + V+ VEI   +VE A+ N   N + N K +      F + + ++     
Sbjct: 312 TIAQIFAKKSESVIGVEIVAEAVEKAQENAKLNGLTNTKFICDDCLNFMEKVEKK----- 366

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTT 338
                        + +DPPR G+    +  ++   P   +YISCNP +   DL   +   
Sbjct: 367 -----------DVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKG 415

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + I+ L  FDQFP T H E  VLL RK
Sbjct: 416 YEIKSLEFFDQFPRTYHCEAVVLLSRK 442


>gi|90412092|ref|ZP_01220099.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium profundum
           3TCK]
 gi|90327070|gb|EAS43449.1| 23S rRNA (uracil-5-)-methyltransferase [Photobacterium profundum
           3TCK]
          Length = 454

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 143/372 (38%), Gaps = 33/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    ++ Q+  K   L  +M+ F        V  +    +   HYR  A F +   
Sbjct: 90  GCNLQHLSHQGQVLAKQQALSDLMVKFAGDQQTTAVEQVTPIIAAEHHYRRCARFSVLLG 149

Query: 55  GDDLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
            D      F + Q+K+ + +      +  +N L+  + + +      R  L  I+ +  +
Sbjct: 150 KDGQLQFGFRKKQSKDIVDVKQCPVLAESLNELLPPLRSLLSTLKGQRH-LGHIELI--E 206

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           +D   V LI H  L     +    + +    +   + L   ++  ++        E    
Sbjct: 207 ADNGRVVLIRH--LKPFSDKDMTLILNFAQEQNVILFLAPTSDDAELIHG-----ETPYY 259

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               L        F Q N  +N  M+E           D +L+L+CG GNFSL LA+H  
Sbjct: 260 RLDDLTLYFSPKDFIQVNRDVNKKMVEQATDWLDLQPNDRVLDLFCGLGNFSLPLAKHAK 319

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE     V  A  N   N  +N    + +  E    +   RE             F
Sbjct: 320 AVVGVEGIDEMVHRASENAMCNKQSNAAFYQANLDEDVTKLAWAREP------------F 367

Query: 293 KTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQF 350
             I +DP R+G       +V+  P  ++Y+SCNP +L RD   +L   + +ERL + D F
Sbjct: 368 NKILLDPARAGAAGVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKGYQLERLGMLDMF 427

Query: 351 PYTRHMECGVLL 362
           P T H+E   L 
Sbjct: 428 PQTGHLESMALF 439


>gi|16329997|ref|NP_440725.1| hypothetical protein sll1967 [Synechocystis sp. PCC 6803]
 gi|50401741|sp|P73374|Y1967_SYNY3 RecName: Full=Uncharacterized RNA methyltransferase sll1967
 gi|1652483|dbj|BAA17405.1| sll1967 [Synechocystis sp. PCC 6803]
          Length = 463

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 147/388 (37%), Gaps = 45/388 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEP--IHYRMRAEFHIWH-DG 55
                   Y+ Q+  K  ++   +     F    L+     P  + YR +A + +     
Sbjct: 91  GCQWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGYRNKATYPLSRSKT 150

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM-------ATIRLEPLLRAKLFQID 108
             +    + + +   + I+        +N L+ E+         +I  E   + KL  + 
Sbjct: 151 GQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKKQGKLRHLS 210

Query: 109 YLTSQ-SDQAIVTLIY-HRLLDD------AWRECAIRLRDALHARKYQIQLIGRANKTKI 160
               Q + + ++TLI  H+ L D       W E    L       + +       ++T +
Sbjct: 211 LRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIFGDETVV 270

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219
              R    E+       L +    N+F Q N+G    +L  +  A      +LL + Y G
Sbjct: 271 IAGRGICREKFA----DLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYAG 326

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G F+L LAR   + +A+E+ + SV   + N   N + NV  +  + +     +      
Sbjct: 327 VGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTL------ 380

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST 337
                    S     + +DPPR G     +  +++  P  I YISC P +L RDL  L  
Sbjct: 381 ---------SEIPDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCA 431

Query: 338 T--HTIERLALFDQFPYTRHMECGVLLV 363
              + I  +   D FP T H+EC V+L 
Sbjct: 432 EGFYGITWVQGCDFFPQTAHVECAVILK 459


>gi|282600209|ref|ZP_05973425.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia
           rustigianii DSM 4541]
 gi|282566270|gb|EFB71805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Providencia
           rustigianii DSM 4541]
          Length = 427

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 147/364 (40%), Gaps = 28/364 (7%)

Query: 13  QLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--T 67
           Q   K   L+ +M        P   +   E   YR RA   + +     + +M  +Q  +
Sbjct: 84  QRESKAQSLQHLMRRETGVTKPATPVISGEEYGYRRRARLGLQYQNKSRHLVMGFRQIQS 143

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
              + I         ++AL+  +   +     + AKL  ++ +   +D   V L+ H  L
Sbjct: 144 NTLVDIKSCPVLYTELDALLAPLSECLNSL-SIAAKLGHVELI--HADNGNVILLRH--L 198

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
                    RL +     +  I L G   + +  L+         VA  +L +     +F
Sbjct: 199 VPVNVSDRNRLLEFAQKHQVNIWLAGDEGELQ-PLEPSTRLPEYQVADESLQFN--PLNF 255

Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  IN  M+   +A      +  +L+L+CG GNF+L +AR    V+ VE  +  V  
Sbjct: 256 IQVNGEINQQMVAQAIAWLDISPEDRVLDLFCGMGNFTLPIARIAKSVVGVEGVENLVSQ 315

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR N   N +NN      + +E            ++         F  + +DP R+G   
Sbjct: 316 ARSNAQLNSINNASFYNANLEE------------QIHTQPWAQQGFNKVLLDPARAGAAG 363

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               + +  P  I+Y+SCNP +L RD   +L   + + +L + D FP+T H+E   L +R
Sbjct: 364 VMEHLTKLMPEKIVYVSCNPTTLARDSKVLLEGGYQLHQLRMLDMFPHTSHLESMALFIR 423

Query: 365 KPSG 368
            P G
Sbjct: 424 SPEG 427


>gi|227889569|ref|ZP_04007374.1| possible tRNA (uracil-5-)-methyltransferase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849871|gb|EEJ59957.1| possible tRNA (uracil-5-)-methyltransferase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 459

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 134/387 (34%), Gaps = 40/387 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y +QL  K   + + +  +   +         I      +YR +A++ I  +   
Sbjct: 88  LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPAPNAWNYRNKAQYQIEFNKGK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               ++   ++  + +      +            L++ L I +    R    ++    +
Sbjct: 148 SKLGLYAPNSRRLINLPDMPTQTKETQKVEREIKKLVDKLHIRIADFRRHTYGIKTIAVR 207

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
               T +    ++T+              ++L + +                NKT     
Sbjct: 208 QSNATGEIQVTLITIGKKIKDLKLLASHIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           + ++ E +        ++    +F Q N      +    L          L++ Y G G 
Sbjct: 268 KSHITEEILGK----KFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +    +V+ +E    +V  A+ N   NHV N + ++ + ++             L
Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL------------L 371

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL    +  +        +Y+SCNP +L +DL +LS  + 
Sbjct: 372 PELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSEAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +   D  P T   E    LV + +
Sbjct: 432 VRVIQPVDMMPQTPRWEGVAKLVLRKN 458


>gi|310830057|ref|YP_003962414.1| hypothetical protein ELI_4517 [Eubacterium limosum KIST612]
 gi|308741791|gb|ADO39451.1| hypothetical protein ELI_4517 [Eubacterium limosum KIST612]
          Length = 454

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 141/391 (36%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             T     YE+QL  K + +  ++    +   +    I   E   YR + E+    D  D
Sbjct: 83  GCTYQSLPYEKQLELKANYVLSLLGKAGIDGFEFGGIIPSPEVFEYRNKMEYSFGDDVKD 142

Query: 58  L--YHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAK 103
                 M ++ +    ++ D         N +   ++   +            E  LR  
Sbjct: 143 GPLLLGMHERGSFYNIVKTDCCRLTDEDFNIIQRAVLGYFQEKDQTYFHKRSHEGFLRHL 202

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    +VT     L    + E  +       ++  LH     +  + + + 
Sbjct: 203 VIRKGRQTGEILVNLVTTSQSELDSADFTELLLTLELSGEIKGILHTINDGVADVVKKDD 262

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
             I    D + +++      L +     SF Q N      +   V       Q   + +L
Sbjct: 263 LHILYGEDCIHDKIL----GLEFEISTFSFFQTNTLGAEKLYSVVRDYVGDRQDKTIFDL 318

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  + VLA    +V+ +E+ + +VEAA+ N  AN ++N   +              
Sbjct: 319 YCGTGTIAQVLAPVAKKVIGIELIEEAVEAAKINAEANGLHNCAFIAGDV---------- 368

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSI 334
                ++ +         I +DPPR G+    +  +  +     +Y+SC   SL RDL  
Sbjct: 369 -----MEKVAELPDNPDIIILDPPRDGIHPKAIFKIIGFKPDTFIYVSCKATSLARDLPF 423

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                + +E++   D FP+  H+E  V L R
Sbjct: 424 FKEAGYGVEKVCCVDMFPHVGHVETVVKLSR 454


>gi|329667719|gb|AEB93667.1| RNA methyltransferase, TrmA family [Lactobacillus johnsonii DPC
           6026]
          Length = 459

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 133/387 (34%), Gaps = 40/387 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y +QL  K   + + +  +   +         I      +YR +A++ I  +   
Sbjct: 88  LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPAPNAWNYRNKAQYQIEFNKGK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               ++   ++  + +      +            LI+ L I +    R    ++    +
Sbjct: 148 SKLGLYAPNSRHLIDLPDMPTQTKETQKVEREIKKLIDKLHIRIADFRRHTDGIKTIAVR 207

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
               T +    ++T+              ++L + +                NKT     
Sbjct: 208 QSNATGEIQVTLITIGKKIKDLKLLASHIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           + ++ E +        ++    +F Q N      +    L          L++ Y G G 
Sbjct: 268 KSHITEEILGK----KFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGVGT 323

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ +     V+ +E    +V  A+ N   NHV N + ++ + ++             L
Sbjct: 324 LGILASDQVRLVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKL------------L 371

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
            ++         + VDPPR+GL    +  +        +Y+SCNP +L +DL +LS  + 
Sbjct: 372 PELKNQGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSDAYD 431

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +   D  P T   E    LV + +
Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRKN 458


>gi|254507467|ref|ZP_05119601.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16]
 gi|219549537|gb|EED26528.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus 16]
          Length = 439

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 154/375 (41%), Gaps = 38/375 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF--QVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDL 58
              +     E+Q   K   L Q+M  F  Q   L+     E + YR RA   +  D    
Sbjct: 90  GCNMQHLGLEKQQQHKQQTLSQLMRKFSGQTTALEAPLVGEALGYRRRARVSLKVDKKSR 149

Query: 59  Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK--LFQIDYLTSQS 114
                   +Q+KE + +         +N LM  +     L    R +  L  I+ +   +
Sbjct: 150 QLQFGFRKKQSKEIVNVVDCPVLDAGLNTLMSPLFE---LLKTFRHQENLGHIELVKGDN 206

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLT 172
            + +V L + + LD+   +    L      ++  + L+ +++     +     Y++  +T
Sbjct: 207 TRVLV-LRHMKALDE---QDQAALEAFAKEQQVSLYLMPQSDVLNRVMGDQAHYLETGVT 262

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
           +           N+F Q N  +N  M+E  L        D +L+L+CG GNFSL +A+  
Sbjct: 263 IPFE-------PNNFIQVNQDVNQKMVEQALNWLDLTAEDRVLDLFCGLGNFSLPMAKKV 315

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE     VE A +N   N + N +  + + ++             +      + +
Sbjct: 316 RSVIGVEGVDAMVEKATHNAEINQLENARFFQANLEQ------------DMSGQPWATEK 363

Query: 292 FKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
           F  I +DP R+G       +       ++Y+SCNP +L RD  S+L+    + +L + D 
Sbjct: 364 FDKILLDPARAGASGIVDQLSDLGASRVVYVSCNPATLARDSQSLLNQGFQLRKLGMLDM 423

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E   L V+
Sbjct: 424 FPHTSHLESMALFVK 438


>gi|225376677|ref|ZP_03753898.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM
           16841]
 gi|225211560|gb|EEG93914.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM
           16841]
          Length = 498

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/433 (20%), Positives = 151/433 (34%), Gaps = 90/433 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN------LQIFRSEPI-HYRMRAEFHIWHD 54
             T     Y++QL  K ++++++M             L I  S     YR + EF    +
Sbjct: 81  GCTYQTLPYDRQLEMKAEQVKKLMDDVIDQENRDYQFLGIKESPRQTGYRNKMEFSFGDE 140

Query: 55  --GDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLL 100
                L   M  + +  + + ++           +            I     +R    L
Sbjct: 141 FKDGPLALGMHKRGSFYDIVTVENCQIVDEDFRKILSVTLAYFREKNITYYHKLRHTGYL 200

Query: 101 RAKLFQIDYLTSQSDQAIVTLIY-----------------------------HRLLDDAW 131
           R  L +    T +    +VT                                   L + W
Sbjct: 201 RHLLVRKAVKTGEILVDLVTTTQTDFPGIAAAQMDEVESTLNNAQENAFAGTEEELLEGW 260

Query: 132 RECAIR------LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
           +   +       +   LH R   +        T +   +D+  E L      L ++    
Sbjct: 261 KAALLAADYKGIMTGILHTRNDNVADTVTNEGTDVLYGQDFFYEELL----GLRFKITPF 316

Query: 186 SFTQPNAGINVHMLEWVL-----AATKGIQGD-------LLELYCGNGNFSLVLARHFDR 233
           SF Q N+     + +        A   G   D       + +LY G G  + +L+    +
Sbjct: 317 SFFQTNSLGAEVLYQTAREFIGDALPSGTDADIAEHGKIVFDLYSGTGTIAQMLSPVAKK 376

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VEI + +VEAA+ N   N ++N + +                   LK ID    +  
Sbjct: 377 VIGVEIIEEAVEAAKENAQLNGLHNCEFIAGDV---------------LKVIDSIEEKPD 421

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350
            I +DPPR G++   +  +  Y  P ++YISC P SL RDL +L    + ++++   D F
Sbjct: 422 YIVLDPPRDGINPKALEKIIRYNVPQMVYISCKPTSLARDLEVLQARGYEVKKVCCVDMF 481

Query: 351 PYTRHMECGVLLV 363
           P T H+E  VL+ 
Sbjct: 482 PSTFHVESVVLMQ 494


>gi|148239625|ref|YP_001225012.1| putative RNA methyltransferase [Synechococcus sp. WH 7803]
 gi|147848164|emb|CAK23715.1| Hypothetical RNA methyltransferase [Synechococcus sp. WH 7803]
          Length = 466

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/394 (20%), Positives = 148/394 (37%), Gaps = 46/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             TL     E Q   K D L   +            L    ++ + YR RA   +     
Sbjct: 86  GCTLQHLSVEAQNRWKQDHLHATLHRIGGLTDLAAPLVSPEAQSLGYRNRALIPLQRLEG 145

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM-----------ATIRLEPLLRAKLF 105
           +L    + + +   + +++       ++AL+  +            + +R +P LR    
Sbjct: 146 ELRLGYYRRGSHRIVNLNHCPVLDPRLDALIEPIKRDLSDTNWPMDSDLRGKPGLRHLGL 205

Query: 106 QIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +I   T +   ++V+   H      L   W +    L+      + +        +T   
Sbjct: 206 RIGVRTGELLISLVSATEHLPGLEQLAGQWMQRWPALKGVTLNVQPKRSNTVLGAQTLCL 265

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI--QGDLLELYCG 219
             +D ++E        L  +    +F Q N      ++  +     G+    ++++ YCG
Sbjct: 266 QGQDVIEEYFC----GLTLQLGTTTFFQVNTERAEQVVTLIRDWIVGVAPSANVIDAYCG 321

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L LA     V+ +EI + SV  A+ N   N +     +     +  + +      
Sbjct: 322 IGTIALPLAAAGLNVIGLEINRASVIQAQENARRNALRTATFIDGDVVDHLRQLL----- 376

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS- 336
                        + + VDPPR GL    + M+ A P   ++Y SC+P +L RDL  L+ 
Sbjct: 377 ----------PIHQVLVVDPPRKGLAPDVLQMILAIPPAFLIYQSCDPATLARDLQQLAG 426

Query: 337 --TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
               + IE +   D FP T H+EC V++VR  S 
Sbjct: 427 PDGPYRIETIRPVDFFPQTSHLECLVMMVRISSE 460


>gi|330720605|gb|EGG98867.1| RNA methyltransferase2C TrmA family [gamma proteobacterium
           IMCC2047]
          Length = 418

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 140/373 (37%), Gaps = 29/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
             +L     + Q+  K   L + +  F     +            YR +A   + +    
Sbjct: 59  GCSLQHFDGQAQIEFKQATLMEHLHHFGEQKPETLLDPVTGPSYAYRRKARLGVRYVSKR 118

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D++     ++       I         +   +  +   I      R  L QI+       
Sbjct: 119 DEVLVGFREKGNSFITDIGQCHILDERLGNKITLLREFIMGLEAYRT-LPQIEVAIGDDS 177

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--V 173
            A+V     R ++         LRD   A+ + I L      T   L  +  D+RLT  +
Sbjct: 178 VALV----FRHMEPLSESDTAALRDFGEAQDFHIYLQPGGPDTVSKLWPEQGDDRLTYRL 233

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARH-F 231
               +  R     FTQ NA IN  ++   L          +L+L+CG GNF++ LAR   
Sbjct: 234 DEFDVEMRFHPMDFTQVNADINRKVVHLALQYLDVQPDERVLDLFCGLGNFTMPLARSTG 293

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE ++  VE    N   N + NV+     + + TQ           +        
Sbjct: 294 AAVIGVEGSEAMVERGFENARHNGLENVEFF---AADLTQDF---------EHQPWSKQG 341

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
           F  I +DPPRSG  +    + +     I+Y+SCNP +L RD   L+   +T++   + D 
Sbjct: 342 FDKILIDPPRSGALEVIQKIARFKAKRIVYVSCNPATLARDAGELALHGYTLKAAGVLDM 401

Query: 350 FPYTRHMECGVLL 362
           FP T H+E   + 
Sbjct: 402 FPQTAHVESIAVF 414


>gi|304439171|ref|ZP_07399089.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304372303|gb|EFM25891.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 532

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 145/392 (36%), Gaps = 42/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDL 58
             T     YE ++A K + L++++           + +S     YR + E+    +  D 
Sbjct: 73  GCTYQNFSYEDEIAYKEEMLKKLLRENDIDAEEFYLIKSPKYKEYRNKMEYTFGDEEKDG 132

Query: 59  YHIMFDQQT---KERMRIDYFMPGSLLINALMIEMMA-----TIRLEPLLRAKLFQIDYL 110
              +   +     E + +D  +      + + I+        +          L  +   
Sbjct: 133 PLALGLHKKGYFHEVVDMDKCLIVHPDFDKVRIKTREYFQGTSFYNRKTHEGVLRHLSLR 192

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIR---------LRDALHARKYQIQLIGRANKTKIC 161
            + S + ++ L+     +                  ++  LH    ++      ++  I 
Sbjct: 193 RTISGEMLINLVTSSQEEIDIENYVKAMLELDLESEIKGILHTINDRMSDAVVKDELHIL 252

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
             RDYV E+L      + ++    SF Q N      +        K     LL+L+CG G
Sbjct: 253 YGRDYVVEKLM----DMEFKIGPFSFFQTNTYSAEVLYTEAEKILKDKGDYLLDLFCGTG 308

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             + +L ++    L VEI + +V++AR N+  N + N+K +     E  + +        
Sbjct: 309 TITSILGKNRKEALGVEIVEEAVDSARENVELNGLKNIKFIPGDVYEVVKELEN------ 362

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-T 338
                     +  I VDPPR+G+    +  +      +ILYISCNP +   D+       
Sbjct: 363 ---------MYDIIVVDPPRAGIGKKAIEKITEFGVENILYISCNPVTFVEDIKTFRECG 413

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           +  + +   DQFP T H+E   LL +  +  H
Sbjct: 414 YKEKSVHGVDQFPRTNHVETVALLYKLNTEHH 445


>gi|46579337|ref|YP_010145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|51316680|sp|Q72DK5|Y924_DESVH RecName: Full=Uncharacterized RNA methyltransferase DVU_0924
 gi|46448751|gb|AAS95404.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311233164|gb|ADP86018.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris RCH1]
          Length = 468

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 145/391 (37%), Gaps = 41/391 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEP--IHYRMRAEFHIWHDGD 56
             T     Y  QLA K   +R  +        PN+      P    +R + EF    D  
Sbjct: 82  GCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNKMEFAFTTDDR 141

Query: 57  DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQIDY 109
           ++ H  +  +   E + +      +     ++       R   L           ++   
Sbjct: 142 EMLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDAAHRGFWRFLV 201

Query: 110 LT--SQSDQAIVTLI--YHRLLDDAWRECAIRLRDAL-------HARKYQIQLIGRANKT 158
           +   ++  Q +V  I   H   +   R     LR A+       H+ + Q   +   + T
Sbjct: 202 VREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSIRSQNSQVAYGDAT 261

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
                   + E+L        +    ++F Q N      +   V     G+ G   + +L
Sbjct: 262 VFTEGEIVLTEKLGAIELDFGH----DTFLQTNTRATELLYGEV-ERMAGLSGREHVWDL 316

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G+ +L LA H   +  +E    SVEAA+ N  A    +   V    +    A+ R 
Sbjct: 317 YCGVGSIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVR----ALLRS 372

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334
           R   + ++          +  DPPR+G+    +  +   A   I+Y+SC+P ++ RD+ +
Sbjct: 373 RSKGKAQEPI-----PDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGL 427

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L   +T+      D FP+T H+E  VLL  K
Sbjct: 428 LMQRYTLHEARPVDLFPHTPHVETVVLLSNK 458


>gi|260654818|ref|ZP_05860306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi
           E3_33 E1]
 gi|260630533|gb|EEX48727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Jonquetella anthropi
           E3_33 E1]
          Length = 454

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 133/379 (35%), Gaps = 41/379 (10%)

Query: 13  QLAEKVDRLRQMML---AFQVPNLQIFRSEP--IHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           QL  K   +   +     F +P        P    YR +A F +           F   T
Sbjct: 85  QLELKSLIVEDSLRRLGGFDLPEKISCLPSPVQWGYRNKASFPVRRTASGETTGFFKMGT 144

Query: 68  KERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQSDQAIVT 120
            + + I+           L   +   +         E   R  L  I    S     ++ 
Sbjct: 145 HDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSAYDEKTGRGWLRHIVVRASTYGSGLLA 204

Query: 121 L--IYHRLLDDAW---RECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLT 172
           L  +  +   +     R+    L+    A       I  +   +I  D        +R+ 
Sbjct: 205 LLVVTSKPDQEGMASLRDLWRYLQSRQPALSGLALSINPSRGNRIIGDETVPVAGTDRVH 264

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                        SF Q N      + ++  +         LELYCG G+ +  LAR   
Sbjct: 265 ECLGPFRLEYDGTSFFQVNTAQAARLFDYASSLVPDGS-RTLELYCGVGSLTAFLARKSR 323

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V A EI  P+VE AR N++ N++ NV++    +++    +                   
Sbjct: 324 AVTAAEIWPPAVEMARKNMSGNNLTNVELRLSPAEKLPSDLFE---------------GQ 368

Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIE--RLALF 347
             + VDPPR+G D   +  +       I+Y+SCNP +L RD + L S  + +    +  F
Sbjct: 369 DCLVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARDAARLQSAGYQLVTSSVRAF 428

Query: 348 DQFPYTRHMECGVLLVRKP 366
           D FP T H+E   LL RK 
Sbjct: 429 DMFPQTSHVETVALLCRKD 447


>gi|2196421|dbj|BAA20428.1| unnamed protein product [Synechocystis sp. PCC 6803]
          Length = 463

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 147/388 (37%), Gaps = 45/388 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEP--IHYRMRAEFHIWH-DG 55
                   Y+ Q+  K  ++   +     F    L+     P  + YR +A + +     
Sbjct: 91  GCQWQHLDYQFQVESKQQQIIDALERIGGFTXLPLEPLLQSPASLGYRNKATYPLSRSKT 150

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM-------ATIRLEPLLRAKLFQID 108
             +    + + +   + I+        +N L+ E+         +I  E   + KL  + 
Sbjct: 151 GQVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKKQGKLRHLS 210

Query: 109 YLTSQ-SDQAIVTLIY-HRLLDD------AWRECAIRLRDALHARKYQIQLIGRANKTKI 160
               Q + + ++TLI  H+ L D       W E    L       + +       ++T +
Sbjct: 211 LRIGQRTGEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIFGDETVV 270

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219
              R    E+       L +    N+F Q N+G    +L  +  A      +LL + Y G
Sbjct: 271 IAGRGICREKFA----DLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYAG 326

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G F+L LAR   + +A+E+ + SV   + N   N + NV  +  + +     +      
Sbjct: 327 VGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTL------ 380

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST 337
                    S     + +DPPR G     +  +++  P  I YISC P +L RDL  L  
Sbjct: 381 ---------SEIPDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLCA 431

Query: 338 T--HTIERLALFDQFPYTRHMECGVLLV 363
              + I  +   D FP T H+EC V+L 
Sbjct: 432 EGFYGITWVQGCDFFPQTAHVECAVILK 459


>gi|307155029|ref|YP_003890413.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7822]
 gi|306985257|gb|ADN17138.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7822]
          Length = 460

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 129/384 (33%), Gaps = 50/384 (13%)

Query: 11  EQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSE-----PIHYRMRAEFHIWHDGDDLY- 59
           E Q   K   + Q +              +         P+ YR +A + +         
Sbjct: 89  EYQRTAKSLMVTQTLQRIGGFCDPPVAPILGEGNRPELKPLEYRNKASYPLGISAQGTVK 148

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-----------RLEPLLRAKLFQID 108
              + +QT   + ++        +N  + ++ A I             +  LR    +I 
Sbjct: 149 AGYYRRQTHHIVNLNQCPVQDPRLNPFLAKIKADIAERKWTIYQEKHHQGQLRHLSLRIG 208

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLDR 164
             T +    +VT   H    +   +  ++    L             +    +T+    R
Sbjct: 209 RRTGEILLTLVTTDVHLKGIEEQAQIWLKRYPGLVGVCLNYNPSKTNVIFGEQTQTVAGR 268

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNF 223
            Y+ E        L +     +F Q N      +++ +           L++ YCG G F
Sbjct: 269 PYLREIFA----ELEFELRPETFFQVNTEAAEALIDVIFDKLELQGTETLVDAYCGIGTF 324

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L LAR   +   +E+   S+  A+ N   N ++NV  +  + +                
Sbjct: 325 TLPLARRVKQAFGIELHSSSIIQAQKNAQINGLSNVSFMTGAVETLLP------------ 372

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS--TTH 339
              +       + +DPPR G     +  +     P I+YISC   +L RDL  L    ++
Sbjct: 373 ---LVDMTPDLVLLDPPRKGCPPTVIDTLLKLKPPRIVYISCQVGTLARDLKQLCDKGSY 429

Query: 340 TIERLALFDQFPYTRHMECGVLLV 363
            +  +   D FP T H+EC   L 
Sbjct: 430 HLTFVQPADFFPQTSHVECAAFLS 453


>gi|24374962|ref|NP_719005.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella oneidensis
           MR-1]
 gi|50401580|sp|Q8EBQ3|RUMA_SHEON RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|24349686|gb|AAN56449.1|AE015782_1 RNA methyltransferase, TrmA family [Shewanella oneidensis MR-1]
          Length = 449

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 142/376 (37%), Gaps = 34/376 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDG--D 56
              L       Q   K   L  +M  F             E  HYR RA      D    
Sbjct: 91  GCDLQHMSLTAQREHKSAALVDIMAKFAGAEGSLAPALSGEGWHYRRRARLATLFDKNTK 150

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L        +   + I   +  +  ++ L I   A +  +   ++ L  ++ + + +  
Sbjct: 151 QLSLGFRASSSSHVVSITECLVLAKPLSDL-IAPFAKLLNQLAAKSSLGHLELIAADNGH 209

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKTKICLDRDYVDER 170
             V  I   L D    +   +L       +  I L          N T +      +D++
Sbjct: 210 FAVIRITKSLND----KDMAKLAQFAEQHQIHICLQDNEGEFHGVNGTLLLPVYQLLDDK 265

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
             V   +L +     +F Q NA IN  M+   L       G+ +L+L+CG GNFSL LAR
Sbjct: 266 TDVQPVSLTF--TPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAR 323

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE     V  AR N  AN ++N+          +  +  E    ++       
Sbjct: 324 MGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGD---LSADLSSEPWMGKI------- 373

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALF 347
                + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L 
Sbjct: 374 ---DKLLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLI 430

Query: 348 DQFPYTRHMECGVLLV 363
           D FP T H+E   L  
Sbjct: 431 DMFPQTHHIEAMALFE 446


>gi|157374425|ref|YP_001473025.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|226725393|sp|A8FSS4|RUMA_SHESH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|157316799|gb|ABV35897.1| RNA methyltransferase, TrmA family [Shewanella sediminis HAW-EB3]
          Length = 442

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 151/371 (40%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEF--HIWHDG 55
              L     ++Q + K   L  +M        +        +   YR RA    H   + 
Sbjct: 91  GCDLQHLSIDKQRSYKQSALVDLMAKLSHTEAESLAPALIGQEWDYRRRARLATHYNKES 150

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +        +K+ + ID     +  ++ L I  ++ +  +   +  L  ++ + + + 
Sbjct: 151 KQITLGFRASASKQVINIDVCPVLAKPLSDL-IAPLSLLLNQLSGKKALGHLELIDADNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L   + L D   + A +L    + +   + + G   +  I  DR+   E    A 
Sbjct: 210 YFAV-LRMTKALSD---KDAKKLTAFANEKSISLIVQGNEGEFTILGDRN---ELPYYAL 262

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             +       +F Q NA IN  M++  +   +      +L+L+CG GNFSL LA+    V
Sbjct: 263 DDVKLNFTPGNFIQVNAAINESMVKQAVDWLSVKPNERVLDLFCGVGNFSLPLAKSGAEV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ AR N A + ++NV        + +  + +E    ++            
Sbjct: 323 IGVEGVPEMVKQARENAADSGLDNVSFFH---TDLSADLSKETWLGKV----------DK 369

Query: 295 IFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352
           + +DP R+G  ++   + +  P  I+Y+SC+P SL RD   +L   + +++L L D FP 
Sbjct: 370 LLLDPARAGAFESLQWLKKMKPKAIVYVSCDPSSLARDSEPLLKHGYKLKKLGLIDMFPQ 429

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 430 THHIEAMALFE 440


>gi|218886478|ref|YP_002435799.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757432|gb|ACL08331.1| RNA methyltransferase, TrmA family [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 479

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 144/408 (35%), Gaps = 60/408 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSE-PIHYRMRAEFHIWHDGD 56
                   Y +QL  K   +   +           L I  S     +R + EF    D D
Sbjct: 84  GCAWQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRNKMEFAFSQDRD 143

Query: 57  DLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----------RAKL 104
              H  +  + ++  + I      + L   ++  +    R   L            R  +
Sbjct: 144 GQLHLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPGWDDSRQDGFWRFLV 203

Query: 105 FQIDYL---------------TSQSDQAIVTLIYHR---------LLDDAWRECAIRLRD 140
            +   L                +   Q ++  I  R          L +A R     +  
Sbjct: 204 VREPELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSRLAEALRARFPEVTG 263

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            +H+ +   + I    +         + ERL      L      +SF Q N      + +
Sbjct: 264 VVHSLRLDPEQIAYGERVLAVDGEAVLTERLGGNDLLL----GPDSFFQTNTAAAGLLYD 319

Query: 201 WVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                A  G    + +LY G G  +L LAR    V   EI   +V  AR N A N++ N 
Sbjct: 320 EARRMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARANAARNNILNC 379

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PH 317
             V    +    ++RRER               + + VDPPR+GL +  V  V A+    
Sbjct: 380 SFVSGDVR---ASLRRER--------PGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPER 428

Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           I+Y+SCNP ++ RD ++ +   + ++     D FP++ H+EC  LL R
Sbjct: 429 IVYVSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476


>gi|145340698|ref|XP_001415457.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575680|gb|ABO93749.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 536

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 146/410 (35%), Gaps = 50/410 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--------IFRSEPIHYRMRAEFHI-W 52
                   Y+ Q+  K +R+  ++                 +   E   YR + EF    
Sbjct: 130 GCAWQHVNYDAQVGHKRNRVVDVLARIYKAGEDAEAKVGACVGADETSRYRNKMEFAFAS 189

Query: 53  HDGDDLYHIMFDQQTKERMRIDY---FMPGSLLINALMIEMMATIRL------------- 96
                    +  +   + + +D     +  S   + ++  +  T+               
Sbjct: 190 GTRGKTVVGLRPRGANDSV-VDLSGGCLLQSEEADRVLAAIRETLERADGRLEAFDRTSG 248

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR-LRDALHARKYQIQLIGRA 155
           E  LR+   +        ++A++  +      +  +   +  L D +      + ++  +
Sbjct: 249 EGTLRSVTIRTAGGERGGEKAVMVDLATTASPNELKTGPLAGLIDVVSKVPGVVSVVHTS 308

Query: 156 NKTKICLDRD------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
             T             + + +L      + +     SF Q N      ++  V  A    
Sbjct: 309 GGTTTKAGSTKKVEAVFGENKLVETLNGIDFELSSASFFQTNTEQAARLVRQVREAC-AF 367

Query: 210 QGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            GD    +L+L+CG G   L +A    RV+  E+   +V+ A+ N   N++ N K  R+ 
Sbjct: 368 SGDKSEIVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAELNNITNAKFYRVD 427

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
                 +   +      K  ++       +  DP R G+D A + +++      I+Y+SC
Sbjct: 428 LARLNPSKGPKGLLTTPKGKELP--MPDIVITDPARPGMDSALIAILRTIGARRIVYVSC 485

Query: 324 NPDSLCRDLSILSTT--------HTIERLALFDQFPYTRHMECGVLLVRK 365
           NP +  RDL +L+          + ++ +   D FP+T H+E   +L RK
Sbjct: 486 NPATQARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESVAVLERK 535


>gi|282858081|ref|ZP_06267276.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pyramidobacter
           piscolens W5455]
 gi|282584003|gb|EFB89376.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pyramidobacter
           piscolens W5455]
          Length = 541

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 142/398 (35%), Gaps = 49/398 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56
              L   +Y  Q   K       +       +      +       YR +A F +   G 
Sbjct: 75  GCQLQHAEYTLQCQIKAMLAADALRRIGGFEIDGEIPCVPSRNEWRYRNKASFPVRARGR 134

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109
                 F + + E + +D         N L   +   I         E      L  +  
Sbjct: 135 AGDVGFFKRGSHEIVPVDRCPVICDRANKLYAVVKNMINYGRFCCYDEKSNSGWLRHVVI 194

Query: 110 LTSQSDQAIVTLIYH------------RLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
            +++  + ++ ++                L D  +E    LR  +         +    +
Sbjct: 195 RSARDGEELLLILVAAARPEGGALESLERLYDHLKERFPELRGLVVNVNPDEGNVIIGAE 254

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
           + +    D + ERL              SF Q N G    +  +  +  +G   +LLELY
Sbjct: 255 SVLVKGEDRLTERLG----NFRLDYDGTSFFQANPGQAEQLFAYAASLAEGQ--NLLELY 308

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  +  L+R    + AVE+   +V  AR N  +N +  + +++ +++          
Sbjct: 309 CGVGALTAFLSRKAKTIRAVEVWASAVALARENGESNRIEGLTVLQGAAENVVA------ 362

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335
                            + VDPPR+G D + +  + A   P +LYISCNP +L RD ++L
Sbjct: 363 --------PADLEGIDCVVVDPPRAGCDKSLIETIAASRVPRVLYISCNPATLARDAALL 414

Query: 336 -STTHTI--ERLALFDQFPYTRHMECGVLLVRKPSGWH 370
               + +  + L +FD FP T H+E   LL +     H
Sbjct: 415 RDAGYVLDMDSLKVFDMFPQTCHVETVCLLSKLHEAKH 452


>gi|154492137|ref|ZP_02031763.1| hypothetical protein PARMER_01769 [Parabacteroides merdae ATCC
           43184]
 gi|154087362|gb|EDN86407.1| hypothetical protein PARMER_01769 [Parabacteroides merdae ATCC
           43184]
          Length = 474

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 144/402 (35%), Gaps = 55/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDG- 55
                   YE+Q+  K  ++   +       ++             YR + EF   +   
Sbjct: 84  GCKWQHLPYEEQIRYKHKQVIDNLTRIGKIEMEEILPIKGSKHTTFYRNKLEFTFSNKKW 143

Query: 56  --------DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEP--- 98
                   +  +  M            + + I      + + N + + +           
Sbjct: 144 LTEEEVKTEAKFDCMDAVGFHIPGMFDKVLDIHKCWLQNDISNRIRLAVKEYCLTHEGYP 203

Query: 99  --LLRAKLFQIDYL---TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153
              LR +   +  L   T+ +   +V L++     +        + +        + +I 
Sbjct: 204 FFDLRNQEGFVRTLMIRTASTGDLMVVLVFFYEDVERREALLSYVAEQFPEITSLMYVIN 263

Query: 154 RA-----NKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
                      + +   +D++ E +      L ++    SF Q N+      L  V    
Sbjct: 264 EKCNDTITDQDVLVFRGKDHIIEDM----EGLQFKVGPKSFYQTNSEQAYE-LYKVAREF 318

Query: 207 KGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            G+ G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N + N + N      
Sbjct: 319 AGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSSLNKIENTLFYAG 378

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYIS 322
             K+              +D      R   I  DPPR+G+ D  +  +       I+Y+S
Sbjct: 379 DMKDILT-----------QDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIVYVS 427

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           CNP +  RDLS+LS  + ++++   D FP+T H+E  VLL +
Sbjct: 428 CNPATQARDLSLLSVKYAVKKVQPVDMFPHTHHVENVVLLEK 469


>gi|309810186|ref|ZP_07704031.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           iners SPIN 2503V10-D]
 gi|315653660|ref|ZP_07906580.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC
           55195]
 gi|308169458|gb|EFO71506.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           iners SPIN 2503V10-D]
 gi|315489022|gb|EFU78664.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus iners ATCC
           55195]
          Length = 355

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 143/371 (38%), Gaps = 40/371 (10%)

Query: 20  RLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
            ++  +L F   N Q       I   +  +YR +A++ I    + +   M+  ++++ + 
Sbjct: 1   MIKDSLLKFHPRNYQKIKVKNTIPAPKQWYYRNKAQYQIESIKNKISLGMYAPKSQKIID 60

Query: 73  IDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           +      S            LI  + I +  +   +  ++  + +  + T +    +VT+
Sbjct: 61  LPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHATDEIQVTLVTI 120

Query: 122 IYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
             +    D   E  I L + +            +   NKT   + ++Y+ E++       
Sbjct: 121 GKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYITEQILNK---- 176

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAV 237
            +     +F Q N      +    L   +     +L + Y G G   ++ +    +V+ +
Sbjct: 177 KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSVLVDAYAGVGTLGILASEKVKQVIGI 236

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E    ++  A++N   N+V N + +  S ++    M+++                  + V
Sbjct: 237 ESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD------------GIAIDALIV 284

Query: 298 DPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355
           DPPR+GL+   V  +        +YISCNP +L RDL +LS  + +  +   D  P T  
Sbjct: 285 DPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQPVDMMPQTPR 344

Query: 356 MECGVLLVRKP 366
            E    LV + 
Sbjct: 345 WEGIAKLVLRK 355


>gi|148242321|ref|YP_001227478.1| putative RNA methyltransferase [Synechococcus sp. RCC307]
 gi|147850631|emb|CAK28125.1| Hypothetical RNA methyltransferase [Synechococcus sp. RCC307]
          Length = 455

 Score =  229 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 154/386 (39%), Gaps = 43/386 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRS--EPIHYRMRAEFHIWHDGDD 57
             +LL  Q + Q   K  +L+  +         ++  RS    + YR RA   +    + 
Sbjct: 83  GCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRNRAIIPVQERDNS 142

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQ 106
           L    F + + + + +++       ++AL+  + A ++            + LLR  + +
Sbjct: 143 LKAGFFQRGSHQVVNMNHCPVLDPRLDALIEPLKADLQAAGWPIYNEDTQKGLLRQLVLR 202

Query: 107 IDYLTSQSDQAIVTLIY----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
               + +    +V         + L + W +    L   +   + +        K ++  
Sbjct: 203 AGVSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVGVVLNVQPKPGNTLLGPKERLLA 262

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
            R ++ E          ++    +F Q +      +++ + +  +   G++L + YCG G
Sbjct: 263 GRPWLMESFA----GRRFQIGLGTFFQVHHQQAEALVDALRSELQLQSGEVLVDAYCGVG 318

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L L +   R++ +E ++ S+E A+ N   N + +      S +      RR +EF  
Sbjct: 319 TLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVE------RRLQEFLP 372

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS--T 337
             D          + +DPPR GLD      ++  P   + Y+SCNP +L RDL++L    
Sbjct: 373 FTD---------VLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALLCADQ 423

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
              + ++  FD FP T H+E   +L 
Sbjct: 424 RFELTKVVPFDFFPQTTHIEAMAILT 449


>gi|218187673|gb|EEC70100.1| hypothetical protein OsI_00745 [Oryza sativa Indica Group]
          Length = 624

 Score =  229 bits (584), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 146/422 (34%), Gaps = 89/422 (21%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEP--------------IHYRMRAEFHIWHD----- 54
           +  K  ++R++++ F   + +   S                  YR + EF          
Sbjct: 218 IRHKHLQVRELLVNFGKFDPRKMESSEPDAILKPIVPCDEIFRYRNKMEFSFGTKRWMQR 277

Query: 55  -----------------GDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMATIRL 96
                            GD     +       + + ++  +  S   + ++  +  T   
Sbjct: 278 EWKEEKDVEVVKEEKVEGDGYSLGLHAPGFFDKVLHVEKCLLQSEPADKVLAIVQETWLD 337

Query: 97  EPL-------------LRAKLFQID-YLTSQSDQAIV---TLIYHRLLDDAWRECAIRLR 139
             L             L+  + +    +T+ + + +V   T  Y   L +       ++ 
Sbjct: 338 PALGLTPYDVHKHVGFLKHLMIRTGRNITTGAPEVMVNFVTSCYKPELLEPLVNNITKIP 397

Query: 140 D---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
           +    ++     +       +      +  + E L    R L ++   NSF Q N     
Sbjct: 398 EVVSIMNNVNTSVGNTSVGEEEYTLYGKPTITEML----RGLTFQISANSFFQTNTKQAD 453

Query: 197 HMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            +L  ++  + G++GD    +L+L+CG G   L LAR    V   E+   ++  A+ N  
Sbjct: 454 -VLYKLIGESAGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADAKKNAK 512

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N ++N   V+    +  +   +E              +   I  DP R G+    +  +
Sbjct: 513 LNGISNATFVQGDLNKINETFGKEF------------PKPDIIISDPNRPGMHMKLIKWL 560

Query: 313 Q--AYPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVL 361
                P I+Y+SCNP +  RDL  L            + ++ +   D FP+T H+EC  +
Sbjct: 561 LEVKAPRIVYVSCNPATCARDLDYLCHGVEEKDLKGCYELKTVIPVDMFPHTPHIECICV 620

Query: 362 LV 363
           L 
Sbjct: 621 LE 622


>gi|226945755|ref|YP_002800828.1| 23S rRNA 5-methyluridine methyltransferase [Azotobacter vinelandii
           DJ]
 gi|226720682|gb|ACO79853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Azotobacter vinelandii
           DJ]
          Length = 454

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 146/375 (38%), Gaps = 30/375 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDG-- 55
             TL    + +QLA K   L + +  F     +            YR RA   +  D   
Sbjct: 99  GCTLQALPHAEQLALKQRTLAEQLARFAGLAPEEWAPPLVGPEFGYRRRARIAVRWDATS 158

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L        ++  + ID        +  ++  + A +      RA L  ++      +
Sbjct: 159 GRLEVGFRAAASQAIVAIDDCPVLVRPLQPILRALPALLHGLARPRA-LGHVELF--HGN 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            + + + +   L DA      RLR        Q+ L GR ++ +       +  RL   G
Sbjct: 216 TSAILVRHTAPLADA---DLQRLRVFCREHAAQLWLQGR-DEPRADAPEAPLGYRLEPWG 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L YR     F Q NA +N  M+   L        + +L+L+ G GNF+L LA+    V
Sbjct: 272 LELHYR--PGDFVQVNAVVNEAMVVQALEWLAPRPEERVLDLFSGLGNFALPLAQRSREV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE   P VE  R N   N +NN+   +    +             L      +  F  
Sbjct: 330 VAVEGVAPMVERGRENATRNGLNNLHFWQADLSK------------PLAGASWAAAGFAA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
           +  DPPR G  +A   +       +LY+SCNP +L RD + L+   + + R  + D FP 
Sbjct: 378 VLCDPPRDGALEAVRQVGSLGAGRVLYVSCNPATLARDATELAGQGYRLRRAGILDMFPQ 437

Query: 353 TRHMECGVLLVRKPS 367
           T H+E   L  R+P+
Sbjct: 438 TAHVEAMALFEREPA 452


>gi|261342212|ref|ZP_05970070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315546|gb|EFC54484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacter
           cancerogenus ATCC 35316]
          Length = 432

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 79/335 (23%), Positives = 138/335 (41%), Gaps = 27/335 (8%)

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMM 91
           +I   +P  YR RA   + +        M  ++  + + + I         + AL+ ++ 
Sbjct: 118 EIIADQPWGYRRRARLSLSYQPKTARLEMGFRKAASSDIVDIRQCPILVPRLEALLPDVH 177

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
           A +     +R  L  ++ + + +   +V     R      ++   +L    H++   + L
Sbjct: 178 ACLSTLDGVRH-LGHVELVLANNGPLMVL----RHTAALSKKDREKLERFSHSQDLALFL 232

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
             ++   +         E    A   L        F Q N G+N  M+   LA     Q 
Sbjct: 233 APQSEILEQVTG-----EAPWYASNGLRLTFSPRDFIQVNDGVNQQMIATALAWLDVQQS 287

Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D +L+L+CG GNF+L LA+    V+ VE  +  V   + N   N + NV     + ++  
Sbjct: 288 DRVLDLFCGMGNFTLPLAQKAACVVGVEGVEALVAKGQENARENGLQNVTFFHQNLEDDV 347

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329
                 R+             F  I +DP R+G       +++  P  ++Y+SCNP +L 
Sbjct: 348 TQQPWARQ------------GFDKILLDPARAGAPGVMQHIIKLAPKRVVYVSCNPATLA 395

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           RD   L S  + I+RLA+ D FP+T H+E  VL  
Sbjct: 396 RDSEALVSGGYQIQRLAMLDMFPHTGHLESIVLFE 430


>gi|317969858|ref|ZP_07971248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CB0205]
          Length = 458

 Score =  229 bits (583), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 138/394 (35%), Gaps = 49/394 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH-DGD 56
             +L       QL  K D ++Q +         +       +   YR RA   +   +  
Sbjct: 84  GCSLQHCSSAMQLELKRDLVQQSLSRLAKLETSVEAVWGCEQGFGYRNRALIPLERAEDG 143

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L    + + + + + +++       I+AL+  +   +                LR    
Sbjct: 144 RLRAGYYRRGSHKIVNLNHCPVLDPRIDALIEPIKKDLEKTGWPVDVNLSAKGGLRHLAL 203

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHARKYQIQLIGRANKTK 159
           ++   T +    +V+   HR L         W E    +       + +   +    +T 
Sbjct: 204 RVGSATGEILITLVS--SHRQLKGLESLAQRWMERWPEVVGVGLNVQPKASNVVMGPETD 261

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYC 218
           +   R ++ E        +  R   ++F Q N      ++E +      G    +++ Y 
Sbjct: 262 LIAGRAWLLEIF----DGIELRIAADTFFQVNTAQAQRLVEPLRQFFAAGKSATVIDAYS 317

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G +SL LAR   +VL +E+   SV  A  N   N +      +               
Sbjct: 318 GIGTYSLPLARSGLKVLGLEVHPLSVSQATANAERNGITTAFFEQADVAAVLA------- 370

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
             RLK          ++ VDPPR GL    +G +       + YISCNP +L RDL  L 
Sbjct: 371 -ERLKMTG-------SLLVDPPRKGLRGEALGAILDGTPDRLAYISCNPSTLARDLQQLC 422

Query: 337 ---TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
                + +E +   D FP T H+E   LL    S
Sbjct: 423 GEEGGYRLETVQPVDFFPQTSHVETLALLTHSGS 456


>gi|307132369|ref|YP_003884385.1| 23S rRNA (Uracil-5-) -methyltransferase rumA [Dickeya dadantii
           3937]
 gi|306529898|gb|ADM99828.1| 23S rRNA (Uracil-5-) -methyltransferase rumA [Dickeya dadantii
           3937]
          Length = 444

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 83/358 (23%), Positives = 133/358 (37%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQQT 67
           Q   K   L  +M        P  ++       YR RA   +++      L        +
Sbjct: 100 QHRSKAAALTHLMTRETGAVPPEPEVIAGSAYAYRRRARLALYYQAKTRRLQMGYRQAGS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + I         + AL++ +   +     +R +L  ++ + ++    ++     R L
Sbjct: 160 HDLVDIGACPILRPELEALLVPLRDCLGQLQAVR-RLGHVELVLAEQGPLVIL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D       + L          +     A   + CL  D    R+      L        F
Sbjct: 215 DPLRDADRLALTAFAARHGTALFAAPEAGALE-CLHGDMPSYRIA----GLSLAFSPRDF 269

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  IN  M+E  L        D +L+L+CG GNF+L LA     V+ VE     VE 
Sbjct: 270 IQVNDDINQRMVERALTWLDPQPQDRVLDLFCGMGNFTLPLAARAGSVVGVEGVAALVEK 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            R N   N +  V       +E             +      S  F  I +DP R+G   
Sbjct: 330 GRENAQRNGLTQVTFYHHDLEE------------DVTRQPWASMGFDKILLDPARAGAPG 377

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
               +V+  P  ++YISCNP +L RD  +L +  + + RLA+ D FP+T H+E   L 
Sbjct: 378 VMPQIVKLAPRRVVYISCNPTTLARDSKVLMAAGYRLARLAMLDMFPHTGHLESMALF 435


>gi|302334849|ref|YP_003800056.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084]
 gi|301318689|gb|ADK67176.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084]
          Length = 416

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 82/403 (20%), Positives = 139/403 (34%), Gaps = 50/403 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHD-G 55
               L   Y  QL  K   + +++      +           EP+ +R +A        G
Sbjct: 16  GCEWLAVPYPIQLRRKQSMMEELLGPVAGRDGARLGRIHGMEEPVSFRHKAATPFSPTRG 75

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKL 104
             +    +   T   +  D  +             + +   + I      R   +LR  +
Sbjct: 76  GAIRSGFYAAGTHRIVDCDACLVEDPRARPILNDVACICAQVGIHAYQEDRGRGILRHAV 135

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  Y T   D  ++TL+ +        E    +  +       +Q + +  +T   L R
Sbjct: 136 VRCGYAT---DDILLTLVTNGQQLPRSNELVEGIVRSHPEVTSIVQNVNQ-RRTNAILGR 191

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
           +    +    +        +     SF Q N      +    + A     G+ +L+ YCG
Sbjct: 192 ECRTLFGPGVMHDKLLGCTFEIGPTSFYQTNPRQTEVLYALAVEAAGLRGGERVLDAYCG 251

Query: 220 NGNFSLVLARHFD---------RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
            G   +  A             RV+ VE    +V  AR N  AN +      VR  +  F
Sbjct: 252 TGTIGICAAAATRRRGAEVQDVRVIGVEQVGDAVACARRNATANGLGGSCSFVREDATAF 311

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS 327
            +           K       RF  +F+DPPR+G   A +  V   A   ++YISCNP +
Sbjct: 312 MR-----------KAAGCGEGRFDVVFMDPPRAGSTPAFIHGVAGLAPHRVVYISCNPTT 360

Query: 328 LCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGW 369
             RDL       + +  + L D FP+T+H+E   L+ R    W
Sbjct: 361 QARDLKEFQQLGYAVSTVELVDMFPHTKHVETIALMTRNGGEW 403


>gi|260771911|ref|ZP_05880829.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio metschnikovii
           CIP 69.14]
 gi|260613203|gb|EEX38404.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio metschnikovii
           CIP 69.14]
          Length = 440

 Score =  229 bits (583), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 144/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGD-- 56
              L     E Q+  K   L  +M  F    + +  S   E   YR RA   +W D    
Sbjct: 90  GCDLQHLSREAQITHKQQTLSHLMSKFAKQAVPLSASIIDEDKGYRRRARLSLWWDKKTR 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + +         +N  + E+   +        +L  ++ +  ++D 
Sbjct: 150 QLQVGFRRKQSKSIVNVTDCPVLEPHLNQCLAELKPLLSGFKQ-PEQLGHVELI--KADN 206

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
             V L+ H  L         RL +     +  + L+   +  +         E       
Sbjct: 207 TSVLLLRH--LAPLPSADKQRLSEFAQRHQLALYLLTDDHPLEHVQG-----ETPYYQET 259

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
            +    +   F Q N  IN  M+   +   +    D +L+L+CG GNFSL LAR    V+
Sbjct: 260 GVTMHFLPTHFIQVNQSINQRMVAQAIEWLEIQANDRVLDLFCGLGNFSLPLARIAHYVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     V  A  N   N +NN    + + ++             +      + +F  I
Sbjct: 320 GVEGVDEMVSVASENAHLNQINNSAFYQANLEQ------------DMTKATWAAEKFDKI 367

Query: 296 FVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
            +DP R+G       + Q     I+Y+SCNP +L RD  S+L+  + + +LA+ D FP+T
Sbjct: 368 LLDPARAGAAGIVEQLGQLSAQRIVYVSCNPATLARDSQSLLNQGYHLAKLAMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L V+
Sbjct: 428 SHLESMALFVK 438


>gi|159029832|emb|CAO90886.1| trmA [Microcystis aeruginosa PCC 7806]
          Length = 460

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 143/381 (37%), Gaps = 45/381 (11%)

Query: 13  QLAEKVDRLRQMMLAFQ-VPNLQIFRS----EPIHYRMRAEFHIWHDG-DDLYHIMFDQQ 66
           QL  K +++++++       +  ++       P+ YR +A + +      ++    + + 
Sbjct: 95  QLQVKKEQVQEVLTRIGGFTDPLVYPPLTGTSPLAYRNKATYPLGFSPTGNVQAGYYRRG 154

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQSD 115
           +   + ++        +N  + E+   I+            +  LR    +I   T +  
Sbjct: 155 SHHLINLNQCPIQDQALNPFLAEIKQDIQGRGWSIYDEKTHQGQLRHLSLRIGRHTGEIL 214

Query: 116 QAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
             +++   +    +     W      L                  +T     RDY++E+ 
Sbjct: 215 LTLISTDNNLQGIETQAQQWLAKYANLVGVTLNYNPDRGNAIFGTQTTTIAGRDYINEKF 274

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH 230
                 L Y+   ++F Q N      +   +    +    ++L + YCG G F+L LA+ 
Sbjct: 275 A----GLTYQLAADTFFQINTEAAEALFSLICQKLELKGEEILIDAYCGIGTFTLPLAKR 330

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V+ +E    S++ A+ N   N + N   +  + ++    +               + 
Sbjct: 331 VKEVIGLESYSFSLDRAKINAQLNDITNTTFILGAVEKTLPQL---------------TV 375

Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT--HTIERLAL 346
           +   I +DPPR G D + +  +       I+YISC   +L RDL  L  T  + +  +  
Sbjct: 376 KPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQYLCKTGDYQLLEVQT 435

Query: 347 FDQFPYTRHMECGVLLVRKPS 367
            D FP T H+EC   L +K +
Sbjct: 436 ADFFPQTPHVECAAFLRQKNT 456


>gi|167394809|ref|XP_001741107.1| RNA m5u methyltransferase [Entamoeba dispar SAW760]
 gi|165894444|gb|EDR22431.1| RNA m5u methyltransferase, putative [Entamoeba dispar SAW760]
          Length = 479

 Score =  228 bits (582), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 151/393 (38%), Gaps = 50/393 (12%)

Query: 2   SGTLLIDQ-YEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPI--HYRMRA--EFHIWHDG 55
            G L     Y+QQL  K  ++  M+    +       ++ PI   YR R    F   + G
Sbjct: 102 GGCLYQSMGYQQQLEMKKKQVLNMINKEIKEYQFDGIKASPINIGYRNRMDYTFGDGYIG 161

Query: 56  DD---LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLR 101
                  H M+     + +            N L            I     I+    LR
Sbjct: 162 GPLECGLHKMYHF--NDVVTTFDCRIVDKDFNKLLLFTRDYFRIKNIPHYNKIKHTGYLR 219

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRA 155
             L +    T++    ++T     +  +  +   + L         +H     I  I   
Sbjct: 220 NLLIRKAKKTNEIMYCLITSSQLTIDLNELKNKLLELPLMGNLVSIIHCIFDDITDIVGY 279

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL- 214
           NK +I    DY+ E L      L ++    SF Q N+     + + V       + D++ 
Sbjct: 280 NKMEILYGNDYITEELL----GLHFKITPMSFFQTNSLGAEVLYQTVREYITTTKCDIIF 335

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  + +L+    +++ VE+   ++ AA+ N   N + N +              
Sbjct: 336 DLYCGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNCEFRTADVN------- 388

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDL 332
              E ++L++      R + I +DPPR+G+    +  +  Y    I+Y+SC P +L RDL
Sbjct: 389 --NELDQLQE-----NRPELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLVRDL 441

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            IL    + ++ + L D FP T H+E   LL +
Sbjct: 442 IILEQNGYKVKNITLVDMFPNTPHIETVCLLKK 474


>gi|255027845|ref|ZP_05299831.1| hypothetical protein LmonocytFSL_18421 [Listeria monocytogenes FSL
           J2-003]
          Length = 319

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 121/331 (36%), Gaps = 34/331 (10%)

Query: 35  IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-----------LI 83
           +    P  YR +++  +      L    + +++   + +   +  +            ++
Sbjct: 5   LGMENPWRYRNKSQVPVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREIL 64

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC---AIRLRD 140
                E       +  +R  + +  + T Q    +VT        +         + L  
Sbjct: 65  AKYGTEPYDEQTGKGDIRHIMTRFAHTTGQLMIVLVTTKERMPFKEEIVRDLVEQLELTS 124

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            +         +   ++TK    +D +++ +      + +     SF Q N      + +
Sbjct: 125 IVQNINPHKTNVIFGDRTKTLWGKDIIEDTIH----GIRFAISARSFYQVNPLQTEVLYQ 180

Query: 201 WVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             + AA    +  +++ YCG G+ SL LA+    V  VEI   +++ AR N   N + N 
Sbjct: 181 QAIDAAELTGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANT 240

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PH 317
                 ++E   +  +                   + VDPPR G D+  +  + A     
Sbjct: 241 TFETGKAEEVIPSWYKA------------GIVADVLVVDPPRKGCDEKLLETILAMKPKK 288

Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALF 347
           ++Y+SCNP +L RD+ IL+   +  +++   
Sbjct: 289 VVYVSCNPGTLARDMKILTDGGYVAKKVQPV 319


>gi|282892425|ref|ZP_06300775.1| hypothetical protein pah_c253o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497827|gb|EFB40188.1| hypothetical protein pah_c253o052 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 484

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 90/399 (22%), Positives = 154/399 (38%), Gaps = 57/399 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDLYH---IM 62
           Y +QL  K +++R +  A   P++Q F      +P  YR + EF    D     +   IM
Sbjct: 96  YAEQLRLKEEKIRALFSAILTPDVQFFPIIPCDDPWQYRNKMEFSFSTDLSQNKYLGLIM 155

Query: 63  FDQQTKERMRIDYFMPGSLLINALMI----------EMMATIRLEPLLRAKLFQIDYLTS 112
              + K     +  +  S  ++AL +          +     R    LR    +    T 
Sbjct: 156 DSSRGKVFNLTECHLTNSWFVDALKVTRNWWESSKLDAYHHYRNTGSLRTLTLREGQRTG 215

Query: 113 QSDQAIVTLIY-----HRLLDDAW------------RECAIRLRDALHARKYQIQLIGRA 155
                +          H+   DA+             EC + +   +H     +      
Sbjct: 216 DRMVILTVSGNPDYALHKNDLDAFVAGLRASIELDRPECRLSIFLRIHQIAKGMASQFYE 275

Query: 156 NKTKICLDRDYVDERLTVAGRT------LIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
               +    D + E+L +  ++      L +    ++F QPN      +    L  +   
Sbjct: 276 ---MVLYGPDQIREKLYIQSQSEEQPVPLEFNISPSAFFQPNTRQAERLYSLALQLSSIS 332

Query: 210 QG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +LYCG G  S+ L++    V+ VEI   +V  AR N A N  +NV  +  +  E
Sbjct: 333 TPITVYDLYCGTGTLSICLSKFAKTVVGVEICPEAVLDARSNAAKNGCSNVHFLCGAVHE 392

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPD 326
               +  E  F               + VDPPR+GLD   +  +++  P  ILY+SCNP 
Sbjct: 393 QLTKIIEENLFPL----------PDLVVVDPPRAGLDPHALQHLIKLSPKKILYVSCNPL 442

Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +   ++S L S  + +E +   DQFP+T H+E   +L +
Sbjct: 443 TQVDNISNLISQGYRLEAMQPVDQFPHTIHIENIAVLTK 481


>gi|281420423|ref|ZP_06251422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM
           18205]
 gi|281405568|gb|EFB36248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM
           18205]
          Length = 483

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 137/410 (33%), Gaps = 70/410 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDG-------- 55
            YE+Q+  K  ++   +       L  FR      +   YR + EF   +          
Sbjct: 91  PYEEQIKAKQKQVEDQLTRIGKIELPEFRPIMGSVKTQEYRNKIEFGCSNKRWFTAEELA 150

Query: 56  ------------DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLE 97
                           H              +   I        L N +   +       
Sbjct: 151 QLPQKEDDTVTSLKERHAQNAIGFHITGAFDKIYPIRKCWLMDDLCNEIRNFVFEYADSH 210

Query: 98  PLL-------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
                        L  +    S + + ++   +H   ++   + A+ L   +  +  QI 
Sbjct: 211 DYTFYDLREQHGLLRNMMIRNSNTGEWMLVFQFHYD-EEGDEQRALELMQQVADKFPQIT 269

Query: 151 LIGRANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
            +   +  K           +    D++ E +      L ++    SF Q N     H L
Sbjct: 270 SLMYVDNQKGNDTINDLELSLFKGNDHIYELM----EDLKFKVGPKSFYQTNTEQAYH-L 324

Query: 200 EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
             V      + GD  + +LY G G  +  +A    +V+ +E    ++E A+ N   N++ 
Sbjct: 325 YCVAREFANLTGDELVYDLYTGTGTIANFVAHKAKKVIGIEYVPEAIEDAKVNSQVNNIE 384

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAY 315
           N        K+               D      R   I  DPPR+G+    + ++   A 
Sbjct: 385 NTLFYAGDMKDILT-----------NDFIAQHGRPDVIITDPPRAGMHPDVINVILNAAP 433

Query: 316 PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             I+Y+SCNP +  RDL ++   + +  +   D FP+T H+E  VLL ++
Sbjct: 434 KRIVYVSCNPATQARDLQLMDAEYKVAAVQPVDMFPHTPHVENVVLLEKR 483


>gi|160894134|ref|ZP_02074912.1| hypothetical protein CLOL250_01688 [Clostridium sp. L2-50]
 gi|156864167|gb|EDO57598.1| hypothetical protein CLOL250_01688 [Clostridium sp. L2-50]
          Length = 463

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 89/402 (22%), Positives = 148/402 (36%), Gaps = 53/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQ--IFRSEPIHYRMRAEFHIWHD 54
                   YE QL  K  ++++++           + +  I       YR + E+    +
Sbjct: 80  GCAYQTMSYEHQLELKAGQVKKLLDGVIDLEAHPYDWEGIIGSPVTTAYRNKMEYSFGDE 139

Query: 55  GDDLYHIMFDQQTKERMRID---YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL- 110
             D   ++   +      I      +  S   N ++   M   R   L   K  Q   L 
Sbjct: 140 YKDGPLVLGLHKKNSMYDIVPVCNCVIVSEDYNRIVSYTMEFARAHGLSYHKKMQHVGLL 199

Query: 111 -------TSQSDQAIVTLIYHRLLDD-----AWRECAIRLR------DALHARKYQIQLI 152
                  +  +   +V L+      +     A+ E  + L         LH     +   
Sbjct: 200 RHLVLRQSKTNGGLLVNLVTSTDGLENLDLNAYVEGLLALPLDGTIIGILHTANDSLADA 259

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
               K  +   RDY++E +      L ++    SF Q N      +           +  
Sbjct: 260 VVPEKVTLLYGRDYIEEEVL----GLHFQISPFSFFQTNTKSAERLYSKAREYAGDTKDK 315

Query: 213 LL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           L+ +LY G G  + +L+    +V+ VEI + +VEAAR N  +N ++N + +         
Sbjct: 316 LIFDLYSGTGTIAQMLSPVASKVIGVEIVEEAVEAARENAKSNGLDNCEFIAGDV----- 370

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
                     LK ID    +   I +DPPR G++   +  +  Y    I+YISC P SL 
Sbjct: 371 ----------LKVIDTIEEKPDLIILDPPRDGINPKALLKIINYGVDEIVYISCKPTSLA 420

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           RDL  L    + +++    DQF  T H+E  VLL  K S  H
Sbjct: 421 RDLVTLQEHGYYVKKACAVDQFVNTGHVETCVLLE-KTSATH 461


>gi|255034870|ref|YP_003085491.1| RNA methyltransferase, TrmA family [Dyadobacter fermentans DSM
           18053]
 gi|254947626|gb|ACT92326.1| RNA methyltransferase, TrmA family [Dyadobacter fermentans DSM
           18053]
          Length = 465

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 137/388 (35%), Gaps = 43/388 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-VPNLQIFR----SEPIHYRMRAEFHI----WHDGDDLYH 60
           Y+ QL  K  ++         + N++I       +  +YR + EF      W   + L  
Sbjct: 89  YDHQLRFKRQQVVDHFERIGKIRNVEINEILAAPKTEYYRNKLEFTFSNWRWLTKEQLDS 148

Query: 61  IMFDQQT----------KERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAK 103
                +T           +   +D+        NA+   +      +             
Sbjct: 149 GQPFAKTALGFHVPKRFDKIFTVDHCHLQPDPSNAIRNSLHRFSEEKGYPYYDVRFNVGV 208

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR---KYQIQLIGRANKTKI 160
           +  +   T+ S   +V + +    DD   E    L +         Y + L G  +    
Sbjct: 209 MRNVIIRTANSGDVMVIVQFGEQNDDIIAEVMAFLHENHPEITSLNYIVNLKGNDSYQDQ 268

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
            +     D+ +      L +     SF Q N+     +        +    + + +LY G
Sbjct: 269 EVIHYAGDKVIRETMEDLTFLVGPKSFYQTNSEQAYKLFSVARDYAQLTGNESVYDLYTG 328

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +  +AR   +V+ VE  + +V+ AR N   N + N        +            
Sbjct: 329 TGTIANFVARSAKKVVGVEYVEAAVQDARINSQLNGITNTAFFAGDMRAIMN-------- 380

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST 337
              +       R   I  DPPR+G+D   +  +   A   ++Y+SCN  +  RDL+++S 
Sbjct: 381 ---ESFLHTHGRPDVIITDPPRAGMDVPVIETILKAAPDRVVYVSCNTATQARDLALMSE 437

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + + R+   D FP T H+E   LLVRK
Sbjct: 438 DYEVTRVQPVDMFPNTHHVENVALLVRK 465


>gi|126654800|ref|ZP_01726334.1| 23S rRNA methyltransferase/RumA [Cyanothece sp. CCY0110]
 gi|126623535|gb|EAZ94239.1| 23S rRNA methyltransferase/RumA [Cyanothece sp. CCY0110]
          Length = 455

 Score =  228 bits (582), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 145/375 (38%), Gaps = 45/375 (12%)

Query: 13  QLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIWH-DGDDLYHIMFDQQ 66
           QL  K +++ Q +         P L I  S   + YR +A + +       +    + + 
Sbjct: 94  QLTAKENQVIQALKRLGGFENPPVLPILSSPEILGYRNKATYPLRRSTTGTVQAGYYQRN 153

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQSD 115
           T + + ++        +N ++ E+   I+ +             LR    +I   T +  
Sbjct: 154 THQLINLNQCPIQDARLNPILAEVKQDIQAQGWSIYNETTGTGKLRHLGLRIGRRTGEIL 213

Query: 116 QAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
             +V+    L   +   + W +    L                  +T   + R Y+ E  
Sbjct: 214 LTLVSTSKNLTNFQQQAETWLQRYPNLVGVSINYNPHEGNKIFGEETFNYVGRPYLLEIF 273

Query: 172 TVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
                 L ++   ++F Q N  G  + +   +   +   + +L++ YCG G F+L LA+ 
Sbjct: 274 G----ELNFQLSSDTFFQVNTDGAELLLKVLLEKLSLTGEENLIDAYCGVGTFTLPLAQQ 329

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             + + +E  K +VE A  N   N VNNV+  + + +     +                +
Sbjct: 330 VTQAIGIESNKKAVEQAINNSKINGVNNVQFYQGTVETMLPFL---------------DF 374

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT--HTIERLAL 346
               + +DPPR G D   +  ++    P I+YISC P +L RDL  L     +T++ +  
Sbjct: 375 SPDIVVLDPPRKGCDRRVIDTLKEMGSPVIIYISCQPSTLARDLQKLCQQDLYTLQWIQP 434

Query: 347 FDQFPYTRHMECGVL 361
            D FP T H+E   L
Sbjct: 435 IDFFPQTAHIESMAL 449


>gi|78357737|ref|YP_389186.1| RNA methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220142|gb|ABB39491.1| 23S rRNA m(5)U-747 methyltransferase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 457

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 72/391 (18%), Positives = 131/391 (33%), Gaps = 49/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHY-RMRAEFHIWHD-G 55
             +     Y  QL  K   +    +        P L    S    + R + EF   +D  
Sbjct: 85  GCSWQHMPYAMQLEWKQRLVHDAFVRIGRIAEPPVLPALASPAQRFFRNKMEFAFENDSP 144

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104
             +   +  + + + + I      S     ++  +                 E   R  +
Sbjct: 145 QGIRLGLRARGSHDVINISECHLQSQRCVRIVDSVRRWAAQTGLTAWDVRSGEGFFRYLV 204

Query: 105 FQIDYLTSQSDQAIVTLIYH----------RLLDDAWRECAIRLRDALHARKYQIQLIGR 154
            +    T Q    ++T              R L D   E    +   +H  +        
Sbjct: 205 IRETLYTGQCMVQLITGPEKTGGNAGARAVRQLGDLLAESGEGITSFIHGERRSPVQAAY 264

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           A KT       ++ E+L        +    ++F Q N      +L    A   G  G L 
Sbjct: 265 AEKTLYSTGDSHLTEQL----NGRTFTMAPHAFFQTNTA-ATEILSRTAADYAGQGGVLW 319

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G   L +A     V  +E+++ +V+ A  N     V   + +    +       
Sbjct: 320 DLYCGVGTMGLGMADQVTSVTGMEVSEEAVQFATLNARNQQVPQARFLAGDVRRLL---- 375

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDL 332
                        H  +   +  DPPR+G+    +  +  +A   I+YISC+P +  RD 
Sbjct: 376 -----------IRHKEKPDIVITDPPRAGMHPDVLSALISRAPRKIVYISCDPATQARDA 424

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           + L+ ++ +E +   D FP++ H+E   L  
Sbjct: 425 AALTDSYRLEAVQPVDMFPHSAHIESVALFS 455


>gi|325684545|gb|EGD26708.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 460

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 136/382 (35%), Gaps = 40/382 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61
            Y  QL  K D L   +  +     +       I   +  HYR +A++ I  +   +   
Sbjct: 95  SYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPAPDQWHYRAKAQYQIERENHHVSLG 154

Query: 62  MFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYL 110
           ++   + + + +      S            LI  L + +    R  P ++  + +    
Sbjct: 155 LYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVRQAEA 214

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYV 167
           + +    ++T+ +         +  +RL   +                NKT     ++ +
Sbjct: 215 SQEMQVTLITVGHKLDNLLQLADEIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRGKNQI 274

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV 226
            E +      L       SF Q N      +    L          L++ Y G G   ++
Sbjct: 275 TEEIMGKKFDL----SPRSFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGTLGIL 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
            A    +V+ +E    +V  A++N+  NHV N + ++ S ++    ++ +          
Sbjct: 331 AADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSVEKLLPRLKED---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERL 344
                   + VDPPR+GL  + +  +        +YISCNP +L +DL +L   + +  +
Sbjct: 381 --GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYDVRVI 438

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
              D  P T   EC   L  + 
Sbjct: 439 ENVDMLPQTPRCECIAKLTLRK 460


>gi|308189665|ref|YP_003922596.1| RNA methyltransferase protein [Mycoplasma fermentans JER]
 gi|307624407|gb|ADN68712.1| RNA methyltransferase protein [Mycoplasma fermentans JER]
          Length = 438

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 152/377 (40%), Gaps = 33/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S  L I  Y  QL  K + ++ +      F      +   +  +YR +    +      +
Sbjct: 82  STPLAILNYADQLEFKENVVKYLFQRNIHFNETQKILPCEKQWNYRNKITVFVESSKGKI 141

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK---LFQIDYLTSQS- 114
              ++++ T + +  D +   +  IN L++ +   I            L QI    S+S 
Sbjct: 142 KFGLYEKNTHKLVEQDSYDLANESINKLLMYLNKNINNYKCFIENGQFLKQIVVRYSESY 201

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD-ERLTV 173
           DQ ++  +  +       E +  L   L +    +++I +  K K      Y + + +  
Sbjct: 202 DQMMLAFVQDKPF-----ELSEDLLKDLTSNFKNLKVILKEEKVKKTTYTYYSEAKNIQD 256

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232
               L +    NSF Q N+    ++   ++         ++++ Y G G  SL +A    
Sbjct: 257 KISNLTFNIDYNSFFQVNSYQTNNLYNLLVDNLHLDKTMNVVDAYSGIGTISLKIAEKVK 316

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V  +EI K +V  A+ N   N++NNV+                     LK ID    + 
Sbjct: 317 KVYGLEIVKEAVINAKQNAKLNNINNVEFYEGDV---------------LKTIDNIKEKI 361

Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI--LSTTHTIERLALFD 348
            TI +DPPR+G+    +  +       I YISCNP +LCRD+ +  LS  + +E L   D
Sbjct: 362 DTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLCRDIDLLTLSKKYKLEFLKPCD 421

Query: 349 QFPYTRHMECGVLLVRK 365
            F  T H+E   +L  K
Sbjct: 422 MFCQTHHVEIVAILKLK 438


>gi|75909839|ref|YP_324135.1| 23S rRNA methyltransferase/RumA [Anabaena variabilis ATCC 29413]
 gi|75703564|gb|ABA23240.1| 23S rRNA m(5)U-1939 methyltransferase [Anabaena variabilis ATCC
           29413]
          Length = 460

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 145/395 (36%), Gaps = 47/395 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
                   YE QL  K  ++ Q +           +  +  +  + YR +A + +     
Sbjct: 84  GCQWQHIDYEYQLIAKRHQVIQALQRIGGFAQPPVDPLLVTASSLGYRNKATYPLDVSAT 143

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104
             +    + + +   + ++        +N L+ ++   I+            +  +R   
Sbjct: 144 GQVQAGYYQKGSHHVVNLNQCPVQDPRLNPLLAQVKQDIQQRGWPIYDEKRHQGQIRHLG 203

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            +I   T +    +V    +    +     W +   +L      R  +        +T+ 
Sbjct: 204 LRIGRRTGEILLTLVVKDGNLPGIEQQAQEWLQRYPQLVGVSLNRNPERTNAIFGRETRC 263

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
                Y+ E        + ++   ++F Q        +L  V+ +   +QG   L++ YC
Sbjct: 264 IAGVPYLREIFA----GMEFQVRPDTFFQVFTETAEALL-QVIESQLNLQGHETLIDAYC 318

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +L L++   + + +E+   +V+ A  N   N +NNV+    + ++    M     
Sbjct: 319 GIGTLTLPLSKQVRQAIGLELQPEAVQQAIINAQHNGINNVEFQVGAVEKLLPKM----- 373

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                           + +DPPR G D   +  + A     I+Y+SC   +L RDL +L 
Sbjct: 374 ----------GIIPDVVLLDPPRKGCDRIVIESLLASKPARIVYVSCKVATLARDLKLLC 423

Query: 337 TT--HTIERLALFDQFPYTRHMECGVLLVRKPSGW 369
               +TI+R+   D FP T H+E    LV   SG 
Sbjct: 424 ADGIYTIQRIQSADFFPQTSHVEAAAFLVLSQSGK 458


>gi|300811827|ref|ZP_07092297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497197|gb|EFK32249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 460

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 136/382 (35%), Gaps = 40/382 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61
            Y  QL  K D L   +  +     +       I   +  HYR +A++ I  +   +   
Sbjct: 95  SYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPAPDQWHYRAKAQYQIERENHHVSLG 154

Query: 62  MFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYL 110
           ++   + + + +      S            LI  L + +    R  P ++  + +    
Sbjct: 155 LYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVRQAEA 214

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYV 167
           + +    ++T+ +         +  +RL   +                NKT     ++ +
Sbjct: 215 SQEMQVTLITVGHKLDNLLQLADKIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRGKNQI 274

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV 226
            E +      L       SF Q N      +    L          L++ Y G G   ++
Sbjct: 275 TEEIMGKKFDL----SPRSFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGTLGIL 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
            A    +V+ +E    +V  A++N+  NHV N + ++ S ++    ++ +          
Sbjct: 331 AADQVKQVVGIESIPEAVLDAQHNVEINHVRNAEYLQGSVEKLLPRLKED---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERL 344
                   + VDPPR+GL  + +  +        +YISCNP +L +DL +L   + +  +
Sbjct: 381 --GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYDVRVI 438

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
              D  P T   EC   L  + 
Sbjct: 439 ENVDMLPQTPRCECIAKLTLRK 460


>gi|294461082|gb|ADE76108.1| unknown [Picea sitchensis]
          Length = 575

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 133/411 (32%), Gaps = 69/411 (16%)

Query: 10  YEQQLAEKVDRLRQMML-----AFQVPNLQIFRSE------PIHYRMRAEFHI----WHD 54
           Y  Q+  K  ++R +++         P    +           +YR + EF      W  
Sbjct: 175 YHAQVWAKEQQVRDLIIHIGRFPILGPGSVDYMKPILPCDVQFYYRNKMEFSFGTKSWRP 234

Query: 55  GD--DLYHIMFDQQT----------KERMRIDYFMPGSLLINALMIEMMATIRLEPLL-- 100
           GD    +  ++  ++           + + I+  +    + N ++  +    +       
Sbjct: 235 GDVVQGHDSLYANKSALGLHVPGCFDKILPINNCLLQHKIANQVLAIVQDCWQHPASNVS 294

Query: 101 -------RAKLFQIDYLTSQSDQA----IVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
                     L  +     +  +     +V  +      +  +    ++ D +      +
Sbjct: 295 AYDVHTHSGFLKHLTLRAGRDQKGLPTLMVNFVTSSYKPELLQPIVWKIIDNIPEVVSIV 354

Query: 150 QLIGRANKTKICLDRDYVDE---RLTVAGRTLIYRQIENSFTQPNAGINVHML---EWVL 203
             I  +       + +Y+      +T   R L++    NSF Q N      +    E   
Sbjct: 355 NNINTSVGNTSIGEEEYILHGNSTITECLRGLVFEISANSFFQTNTYQAEKLYQLIEEAA 414

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                    +L+L+CG G   L LA+    V   E+   +V  AR N   N + N K + 
Sbjct: 415 NLRGDGSEIVLDLFCGTGTIGLTLAKKVKNVYGYEVVPQAVADARRNAERNDIQNAKFIE 474

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321
               +       E                  +  DP R G+    +  +       I+Y+
Sbjct: 475 GDLNKIGDDFGNEF------------PCPDIVITDPNRPGMHTKLIRFLLKLRASRIIYV 522

Query: 322 SCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLV 363
           SCNP +  RDL  L            + ++ +   D FP+T H+EC  LL 
Sbjct: 523 SCNPATCARDLDYLCHGLPESNMPGAYQLKGVQPVDMFPHTPHIECVCLLE 573


>gi|217077926|ref|YP_002335644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermosipho africanus
           TCF52B]
 gi|217037781|gb|ACJ76303.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermosipho africanus
           TCF52B]
          Length = 440

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 156/384 (40%), Gaps = 38/384 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWHDGDD 57
               L  +YE+QL  K       +       L        S+   YR++ E+ I +D   
Sbjct: 76  GCNFLDLKYEKQLEFKKMVFMDQLERIAELKLNDLYIEKSSKEYEYRLKMEYSILNDYSF 135

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-------MATIRLEPLLRAKLFQIDYL 110
            + +   + + + + +   +    + + ++ ++          I      +  L  +   
Sbjct: 136 GFKM---KNSHKVVSVKNCIIAPKVFDKVLEKLSLTLSHFKIPIYNFKRKKGILKHVVLR 192

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---- 166
            S + + ++  +         ++ A  ++      K  + ++   +K  I L   Y    
Sbjct: 193 YSPNGEVMLIFVTKSEYFKEGKKIASLIKKEFPFIKSIVHVMNSNDK--IVLRGPYKVLN 250

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
            D  +        ++    +F Q N  +   M+E++         ++ L+L+ G G FSL
Sbjct: 251 GDGVINYEFSWEKFQVPPTAFFQNNFQVAEKMVEFLTKKLDLNGNEVVLDLFSGLGTFSL 310

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V+AVE +  SV+A R N   N + N+K +   + ++   +            
Sbjct: 311 RLAALSKFVIAVESSHVSVKAGRANANINGLKNIKFIEADALDYLNQVNE---------- 360

Query: 286 DIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIER 343
                +F  I +DPPR+G+  +A   +++  P  I Y+SCNP +  RDL +L   + IE 
Sbjct: 361 -----KFDVIVLDPPRTGIGTEAVKKILELSPQKIGYVSCNPTTFARDLKLLLEKYEIED 415

Query: 344 LALFDQFPYTRHMECGVLLVRKPS 367
           + +FD FP T H+E   +L RK +
Sbjct: 416 IRIFDMFPQTYHIESIAILNRKNN 439


>gi|325125323|gb|ADY84653.1| RNA methyltransferase family [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 460

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 138/386 (35%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QL  K D L   +  +     +       I  S+  HYR +A++ I  +   
Sbjct: 91  LAHLSYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPASDQWHYRAKAQYQIERENHH 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +   ++   + + + +      S            LI  L + +    R  P ++  + +
Sbjct: 151 VSLGLYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVR 210

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
               + +    ++T+ +         +  +RL   +                NKT     
Sbjct: 211 QAEASQEMQVTLITVGHKLDNLLQLADKIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222
           ++ V E +      L       +F Q N      +    L          L++ Y G G 
Sbjct: 271 KNQVTEEIMGKKFAL----SPRAFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +V  A++N+  NHV N + ++ S ++    ++ +      
Sbjct: 327 LGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSVEKLLPRLKED------ 380

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL  + +  +        +YISCNP +L +DL +L   + 
Sbjct: 381 ------GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYD 434

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   EC   L  + 
Sbjct: 435 VRVIENVDMLPQTPRCECIAKLTLRK 460


>gi|261867310|ref|YP_003255232.1| 23S rRNA 5-methyluridine methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412642|gb|ACX82013.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 438

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 83/364 (22%), Positives = 152/364 (41%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQ 65
           E Q + K   L Q +   Q   +Q   + + EP HYR R    +  D     L   +  +
Sbjct: 98  ELQRSAKQKALIQRLSRLQPEPIQFMPLLQGEPWHYRRRVRLSVGFDSKTRKLSIGLRRK 157

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
             ++ + I++       +N L+ ++ A +  +     +L  I+ + + +  A++     R
Sbjct: 158 NAQQIIPIEHCPVLEQPLNDLLPKLTA-LFAQWSAPQQLGHIELVAADNGVAMLL----R 212

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            + +        L          + +          ++  + ++        L  +    
Sbjct: 213 HIKNVAENDRTLLLKFAEQHNLMLFVQELD-----AIEHWHGEQPFYRLDNDLTLQFDIR 267

Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q NA +N  M+   L       +  +L+L+CG GNF+L +AR     + +E     V
Sbjct: 268 DFIQINAELNRQMINTALDWLALNEREHVLDLFCGMGNFTLPIARRVKSAVGIEGVSAMV 327

Query: 245 EAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           E AR N   N  +NV+  +    + F      ++ FN+             I +DPPR+G
Sbjct: 328 EKARRNAERNRCHNVQFYQADLDKSFVNQGWAQQPFNK-------------ILLDPPRTG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
              A   + Q    +ILY+SCNP +L RD  IL +  + ++++A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCQLQAENILYVSCNPATLVRDTEILRNAGYQLDKVAMIDMFPHTGHLESISL 434

Query: 362 LVRK 365
             +K
Sbjct: 435 FRKK 438


>gi|71278294|ref|YP_270771.1| 23S rRNA (Uracil-5-)-methyltransferase [Colwellia psychrerythraea
           34H]
 gi|123631176|sp|Q47WQ1|RUMA_COLP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|71144034|gb|AAZ24507.1| 23S rRNA (Uracil-5-)-methyltransferase [Colwellia psychrerythraea
           34H]
          Length = 469

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 161/394 (40%), Gaps = 49/394 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-------------QVPNLQIFRSEPIHYRMRAE 48
              L +   E+QL  K  ++  +                  +P     +S P HYR +A 
Sbjct: 90  GCDLQMLALEEQLLFKQQKITDLFSRSFSTQNITPEINTAHLPWQAAIKSSPWHYRRKAR 149

Query: 49  FHIWHDGDDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107
             +  D +    I F Q+ T +   I         ++A+   ++  +  +  +++ +  I
Sbjct: 150 IGVQFDKNAQATIGFRQKSTNQLAAIKSCPVLVEPLSAIFP-LLKKLLAQLTVKSAIGHI 208

Query: 108 DYLTS------------QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
           + + +            + +Q +V +   + ++D      I L      R     +I   
Sbjct: 209 EVIQADISDTSSADKIQKDNQVVVVVRQLKPMND----TDIGLWQLYAQRHCWHVIIDDG 264

Query: 156 NKTKICL---DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQG 211
           NK          D  +    +   + +Y    N F Q N  +N  M+   LA        
Sbjct: 265 NKQLPLADIKGGDSFELSYELTDTSKVY-FSSNDFIQINHQVNNAMISQALAWLNILATD 323

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++L+L+CG GNFSL LA+H  RV+ VE  +  V+ A  N   N ++N +  +        
Sbjct: 324 NVLDLFCGLGNFSLALAKHAKRVVGVEGMQTMVDKATQNSLVNGLDNCQFYQAD------ 377

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCR 330
                   + L +  +    F  + +DP R+G + A   + +   P +LY+SC+P +L R
Sbjct: 378 -----LNSHWLLEPWVQGQVFDKVLLDPARAGAEQAVSQIAELKIPCVLYVSCDPATLAR 432

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           D +IL S  + +E+++L D F  T+H+E  +L  
Sbjct: 433 DSAILVSKGYKLEKISLMDMFSQTKHVETMILFT 466


>gi|255533504|ref|YP_003093876.1| TrmA family RNA methyltransferase [Pedobacter heparinus DSM 2366]
 gi|255346488|gb|ACU05814.1| RNA methyltransferase, TrmA family [Pedobacter heparinus DSM 2366]
          Length = 481

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 146/399 (36%), Gaps = 60/399 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHI----WHDGDDLY 59
           +Y  QL  K   +   +              +  ++  +YR + E+      W +  D+ 
Sbjct: 93  EYAAQLKFKHKNVEAALQRLAKIDTTGMEPILGSAQNKYYRNKLEYTFSNKRWLNKTDMM 152

Query: 60  HI-----------MFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99
                        M            + + I++    +   N +  E+        L   
Sbjct: 153 EGAETGAPNPELEMNALGFHVPLRFDKILDIEHCYLQAEPSNTIRNEVRDYALKAGLSFY 212

Query: 100 -LRAK---LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
            LR     L  +   TS + + +V +++  +  +        L++        + ++ + 
Sbjct: 213 DLRNHEGSLRNLVIRTSSTGEVMVAVVFAYVEQEEIIGLMEFLKNRFPEITALLYIVNQK 272

Query: 156 NKTKI-------CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
               I          RD++ E +      L ++    SF Q N+    H L  +     G
Sbjct: 273 KNDTIFDQEVITYAGRDHIFEEM----EGLKFKIGVKSFYQTNSDQA-HELYKITKEFAG 327

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             GD  + +LY G G  +  +AR   +V+ +E    ++E A++N   N ++N        
Sbjct: 328 FSGDELVYDLYTGAGTIANFVARSVKQVVGIEYVPTAIEDAKFNATLNGIDNTVFYAGDM 387

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCN 324
           K+              ++      +   +  DPPR+G+    V  +       I+Y+SCN
Sbjct: 388 KDILT-----------REFIAEHGKPDVVITDPPRAGMHADVVERLLEMEAGKIVYVSCN 436

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
             +  RDL++L   + + R+   D FP+T+H+E  VLL 
Sbjct: 437 AATQARDLALLKEKYEVVRIKPVDMFPHTQHVENVVLLK 475


>gi|318041410|ref|ZP_07973366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CB0101]
          Length = 453

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 138/387 (35%), Gaps = 43/387 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
             +L       Q   K D +RQ +       +++      + P+ YR RA   +    + 
Sbjct: 85  GCSLQHCSDPAQADLKTDLVRQALKRLAQLKVEVLPILQAASPLGYRNRALIPLERTPEG 144

Query: 58  L-YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
                 + + + + + ++        I+ L+  + A +                LR    
Sbjct: 145 QLRAGYYRRGSHKIVNMNRCPVLDPRIDGLIQPIKADLEATRWPVDVNLSQGGGLRHLSL 204

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA----WRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           ++ + + +    +V+   +    +A    W+E    +       + +   +     T   
Sbjct: 205 RVGHHSGEVLITVVSSHNNLPGLEALAQQWQERWPEVVGVNLNIQPKATNVVLGPDTYQV 264

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
             R ++ ER              ++F Q N      ++  ++          +LE YCG 
Sbjct: 265 SGRSWLLERFA----GHELHIGADTFFQVNTAQAERVVPLLVDFFSEQPNTQVLEAYCGI 320

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G FSL LA     VL +E+   SV  AR N   N +   +                    
Sbjct: 321 GTFSLPLAAAGLDVLGLELHHASVAQARANAERNALPTARFEIADVA------------- 367

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST- 337
               +  H    + + VDPPR GL    +  +   P   I YISCNP +L RDL +LS  
Sbjct: 368 --ASLAEHLVWAEALLVDPPRKGLAPEVMDAILQAPPRRIAYISCNPATLARDLGLLSEA 425

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + I  +   D FP T H+EC  LL R
Sbjct: 426 GYRIRPIQPVDFFPQTSHVECLALLER 452


>gi|313123270|ref|YP_004033529.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312279833|gb|ADQ60552.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 460

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 136/382 (35%), Gaps = 40/382 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHI 61
            Y  QL  K D L   +  +     +       I   +  HYR +A++ I  +   +   
Sbjct: 95  SYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPAPDQWHYRAKAQYQIERENHHVSLG 154

Query: 62  MFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYL 110
           ++   + + + +      S            LI  L + +    R  P ++  + +    
Sbjct: 155 LYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVRQAEA 214

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYV 167
           + +    ++T+ +         +  +RL   +                NKT     ++ +
Sbjct: 215 SQEMQVTLITVGHKLDNLLQLADEIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRGKNQI 274

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV 226
            E +      L       SF Q N      +    L          L++ Y G G   ++
Sbjct: 275 TEEIMGKKFDL----SPRSFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGTLGIL 330

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
            A    +V+ +E    +V  A++N+  NHV N + ++ S ++    ++ +          
Sbjct: 331 AADQVKQVVGIESIPEAVLDAQHNVEINHVRNAEYLQGSVEKLLPRLKED---------- 380

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERL 344
                   + VDPPR+GL  + +  +        +YISCNP +L +DL +L   + +  +
Sbjct: 381 --GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYDVRVI 438

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
              D  P T   EC   L  + 
Sbjct: 439 ENVDMLPQTPRCECIAKLTLRK 460


>gi|169824993|ref|YP_001692604.1| RNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|167831798|dbj|BAG08714.1| RNA methyltransferase [Finegoldia magna ATCC 29328]
          Length = 442

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 147/388 (37%), Gaps = 45/388 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--IHYRMRAEFHIW---HDG 55
            G +    +Y+ +   K   L ++       ++ IF   P    YR + E+        G
Sbjct: 76  GGCIYQKLEYDVECDLKKKTLTELYKDIYDEDI-IFHPSPILQGYRNKMEYTFGDSVKGG 134

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKL 104
             +  +    +  E              N +   +              I+   LLR  +
Sbjct: 135 PLVLGLHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHFI 194

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +  +   +    +VT      ++D     ++   R+    H     I      +K ++ 
Sbjct: 195 IRKSFSDDEYMINLVTTSDKFDVNDFVEFAKQIDNRIVSIYHTINDNISDAVIVDKLELL 254

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGN 220
             ++Y+ E++      L +R    SF QPN      +    L     + G ++ +LYCG 
Sbjct: 255 HGKEYLTEKI----NGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGT 310

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  + + A+  + V+ VEI + +VE A+ N   N + N + +      F + + ++    
Sbjct: 311 GTIAQIFAKKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFMEKVEKK---- 366

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILST 337
                         + +DPPR G+    +  ++   P   +YISCNP +   DL   +  
Sbjct: 367 ------------DVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEK 414

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + I+ L  FDQFP T H E  VLL RK
Sbjct: 415 GYEIKSLEFFDQFPRTYHCEAVVLLSRK 442


>gi|218440243|ref|YP_002378572.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7424]
 gi|218172971|gb|ACK71704.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7424]
          Length = 460

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 137/396 (34%), Gaps = 55/396 (13%)

Query: 2   SGTL---LIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRS------EPIHYRMRAE 48
            G     + D Y  Q   K  ++ Q +         P   I           +HYR +A 
Sbjct: 79  GGCQWQHIEDDY--QRKAKHHQVIQTLERIGGFSNPPVAPIIPEGTVEGLTSLHYRNKAT 136

Query: 49  FHIWHDGDDLY-HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------- 99
           + +    +       + + + + + ++        +N L+ E+   I  +          
Sbjct: 137 YPLAKSANGQVKAGYYRRHSHQLVNLNQCPVQDSRLNPLLAEIKGDIEQQGWTIYDEKPH 196

Query: 100 ---LRAKLFQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLI 152
              LR    +I   T +    +VT   +    +     W +    L             +
Sbjct: 197 QGQLRHLSLRIGRRTGEILLTLVTTDENLPNIEKQAQIWSQRYPNLVGVCLNYNPHRTNV 256

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
               KT+    R Y+ E        L ++    +F Q N      +L  +    +    +
Sbjct: 257 IFGEKTRAISGRPYLREIFA----GLEFQLRPETFFQINTQAAEILLGVIFDTLELKGNE 312

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L++ YCG G F+L LA+   R + +E+ + S   A+ N   N + NV  +  + +    
Sbjct: 313 TLIDAYCGIGTFTLPLAQRVGRAIGIEVYRSSTIQAQENAKLNRLLNVSFIPGAVETVLP 372

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLC 329
            +                     I +DPPR G D   +  +       ++YISC P +L 
Sbjct: 373 QL---------------DLIPDIILLDPPRKGCDKTVIETLLKLKPSRLVYISCQPATLA 417

Query: 330 RDLSILS--TTHTIERLALFDQFPYTRHMECGVLLV 363
           RDL +L    ++ +  +   D FP T H+E    + 
Sbjct: 418 RDLKLLCSDGSYNLTGVQPVDFFPQTSHVESVAFIS 453


>gi|117618818|ref|YP_855360.1| 23S rRNA 5-methyluridine methyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|143580479|sp|A0KGG9|RUMA_AERHH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|117560225|gb|ABK37173.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 440

 Score =  227 bits (580), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 82/362 (22%), Positives = 143/362 (39%), Gaps = 30/362 (8%)

Query: 13  QLAEKVDRLRQMMLA---FQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDL--YHIMFDQQ 66
           Q A K   L  +       Q P L+ +   E   YR      I  D +          +Q
Sbjct: 100 QRAAKEAGLVSLFERLGNIQPPALEPVLGGESRAYRRVCRLAIKFDKNGRCTRVGFRRRQ 159

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           + + + I      +  ++ L+  +   +      R +L  ++ + ++    ++     R 
Sbjct: 160 SNDLVEIGGCPVLAEPLSVLITPLRECLNRLKSQR-ELGHVELIQAEQGILMLLRHTGRP 218

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
            +        +L +    +   + L   A++    L + +     + +   L        
Sbjct: 219 TE----ADRAQLIEFAKTQGIDLYLQA-ADEQIEPLHQQFAP---SYSLDGLSLAFAPGD 270

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q NA +N  M+E  L+  +  + D +L+L+CG GNF+L LAR    V+ VE     V 
Sbjct: 271 FIQVNAPVNQRMVEQALSWLEAGKDDKVLDLFCGIGNFTLPLARQAREVVGVEGELAMVA 330

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  N   N +NN +  +         M   RE             F  + +DP R G  
Sbjct: 331 RAEENARRNGINNARFYKADLGGDIAGMSWARE------------GFDLVLLDPARPGAF 378

Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           +    +V+  P  ++Y+SCNP +L RD  +L    + + RL + D FP+T H+E   L  
Sbjct: 379 EVMEHVVKLSPRRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLESMALFE 438

Query: 364 RK 365
           RK
Sbjct: 439 RK 440


>gi|149278953|ref|ZP_01885087.1| putative RNA methyltransferase [Pedobacter sp. BAL39]
 gi|149230232|gb|EDM35617.1| putative RNA methyltransferase [Pedobacter sp. BAL39]
          Length = 487

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 143/403 (35%), Gaps = 57/403 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH--- 53
                   Y+ QL  K   +   +              +  +E  +YR + E+   +   
Sbjct: 86  GCKWQHMGYDAQLQFKHKNVEAALQRLAKIDTSAMEPILGSAENKYYRNKLEYTFSNKRW 145

Query: 54  ---------DGDDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEP 98
                    +  D+   M            + + ID+    +   N L  ++ A      
Sbjct: 146 LNKTDMATPEDGDVALEMNALGFHVPLRFDKILDIDHCYLQADPSNNLRNQVRAYALEHG 205

Query: 99  LL-------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
           L           L  +   TS + + +V +++  +  +        L+         + +
Sbjct: 206 LTFYDLRNHEGNLRNLIIRTSSTGEVMVVVVFAYVEQEQIDGLMGYLKSNFPEITSLLYI 265

Query: 152 IGRANKTKI-------CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
           + +     I          RD++ E +      L ++    SF Q N+    H L  +  
Sbjct: 266 LNQKKNDTIFDQEVLTYAGRDHIFEEM----NGLKFKIGAKSFYQTNSNQA-HELYKITK 320

Query: 205 ATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              G  GD  + +LY G G  +  +AR   +V+ VE    ++E A++N   N + N    
Sbjct: 321 EFAGFSGDELVYDLYTGAGTIANFVARSVKQVVGVEYVPTAIEDAKFNSKLNGIENTIFY 380

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILY 320
               K+              +D      +   +  DPPR+G+    V  +       I+Y
Sbjct: 381 AGDMKDILT-----------RDFIAEHGKPDVVITDPPRAGMHADVVERLLEMEAEKIVY 429

Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +SCN  +  RDL++L   + + R+   D FP+T+H+E  VLL 
Sbjct: 430 VSCNAATQARDLALLKEKYEVTRIKPVDMFPHTQHVENVVLLT 472


>gi|228473017|ref|ZP_04057774.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
 gi|228275599|gb|EEK14376.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
          Length = 469

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 131/404 (32%), Gaps = 58/404 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDG- 55
                   Y+ QL  K   +   +        +     I  ++P  YR + EF       
Sbjct: 84  GCQWQHMNYQSQLHYKQKEVENNLKRLGGVTPEEILPIIGCNKPYFYRNKIEFSFSETRW 143

Query: 56  ----------------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA------- 92
                              +HI       + + I          NA+  ++         
Sbjct: 144 LTPEEITSKEEIADRQGLGFHITGAWD--KVLDIRKCHLQEDPSNAIRNKIREYALSYGY 201

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
                      L  +    S   + ++ + +     +   +    L            +I
Sbjct: 202 PFYNPRSHSGWLRTMMIRISSIGEIMLVIQFLEERKEPREQLLNYLLSEFPTLTSLQYII 261

Query: 153 GRA------NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
                    ++  IC   R+++ E +      L ++    SF Q N+      L  V+  
Sbjct: 262 NNKPNDTIYDQEVICYHGRNFIYEEM----EGLRFKINAKSFFQTNSTQAYE-LYKVVRD 316

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
              + G+  + +LY G G  +  +A+   +V+ VE    ++  A+ N   N ++NV    
Sbjct: 317 FAALTGEELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKENAQNNQISNVDFFV 376

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYI 321
              K               ++          I  DPPR G+    V  +   A   ++Y+
Sbjct: 377 GDMKNVFN-----------EEFITTHGLPDVIITDPPRDGMHKDVVAQILRIAPKRVVYV 425

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           SCN  +  RDL++L   + + R+   D FP T H+E   LL  K
Sbjct: 426 SCNSATQARDLALLQEKYKVVRICPVDMFPQTYHIENIALLEAK 469


>gi|325915832|ref|ZP_08178131.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537953|gb|EGD09650.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 418

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 141/374 (37%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +      + Q        +   YR +  F +      
Sbjct: 62  GCVLQHLEESQQIVAKQRVLMDNLERIGHVSPQAVLPALVGDSWGYRRKGRFSVRRVEKK 121

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  ++A +      +  + QI+++    D
Sbjct: 122 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIP-LLAALVESMDGKRDIPQIEFIAG-DD 179

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L +  R+  +      H     +Q  G  +   +      +  RL    
Sbjct: 180 AVALTIRHMQPLSERDRQAWVEFAQT-HGFAIFLQPGGVDSVQPLWPQDVPLSFRLPQWD 238

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V
Sbjct: 239 VELAFR--PLDFIQVNASLNQKMIAHALALLDARPDDRVLDLFCGLGNFTLPLARTVREV 296

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 297 VGVEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRNAPWMRQ---------GFDK 344

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 345 LLLDPPRSGALEVLQQLPLKKFDRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 404

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 405 HTAHVESIAVFERR 418


>gi|298243496|ref|ZP_06967303.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM
           44963]
 gi|297556550|gb|EFH90414.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM
           44963]
          Length = 463

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 142/383 (37%), Gaps = 44/383 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSE---PIHYRMRAEFHIWHDGDDLYHI 61
           Y  QL  K   +RQ+++        + +  I       P HYR  A F I   G+     
Sbjct: 88  YPAQLTWKAHIVRQLLVRIGKQPDALVHPTIGMPPTLPPWHYRNIALFTIGPRGEIGQK- 146

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-PLLRAKLFQIDYLTSQSDQA--- 117
                + E   +         ++ +   + A I       R ++ Q   +     +A   
Sbjct: 147 --FTDSHEVQDLPTCPLLHPALDHIYQLVRAKIIDYFGDTRGEMIQGFTIRGAIGKASSG 204

Query: 118 ----------IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
                     + TL+       +  E   +L   L A    +  +           R +V
Sbjct: 205 NPGLINTIKAVPTLLTVHARPGSMIEDPQQLAQELMAISPAMVGVIIERVGGR-YGRVFV 263

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
             E L        +R   +SF Q N      ++E  LA  +  + ++ L+ Y G G FS 
Sbjct: 264 GQEFLNDVVLGRHFRVSADSFFQVNLTQTAVLVERALAMLEPQRSEVVLDGYSGVGLFST 323

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA    RVLAVE    +V  AR +   N+ NN+  +  + +     +   RE       
Sbjct: 324 FLATRAARVLAVESQPSAVMDARASSTLNNQNNITSLEGTLERVLNQLHYRRE------- 376

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTI 341
                R     VDPPR+G     +  +Q  A   I Y+SC+P +L RD++ L T   + +
Sbjct: 377 -----RIDLALVDPPRTGCHPKALQALQTMAPRAICYVSCDPSTLARDIATLCTGGRYRL 431

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
                 D FP T H+EC  LL R
Sbjct: 432 VSAQPVDMFPQTYHIECVALLAR 454


>gi|88858179|ref|ZP_01132821.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas tunicata
           D2]
 gi|88819796|gb|EAR29609.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas tunicata
           D2]
          Length = 440

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 163/373 (43%), Gaps = 30/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
             +L   +  QQL EK   + Q+   F    Q+       S P+HYR  A   +++D   
Sbjct: 89  GCSLQHLELSQQLVEKQHAVTQLFNKFAKIDQLNWQPAIESAPLHYRRSARIAVFYDKVK 148

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                    + +K+ + I       +   A+         L P L+             +
Sbjct: 149 RSFNVGFRQKGSKKIVDIGQCDVLDIRYQAVF---REFSSLLPQLKNGQAITHLQLCGVE 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A + +   R +          +       ++ + L G+A + ++    D       ++ 
Sbjct: 206 HAHLVV---RHIAPLAASDIAAIERVCLTHQWLLVLQGQAGEVEL---NDLAPPSYQLSE 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
           ++L +    ++F Q NA +N  ML   +          +L+L+CG GNFSLV+A +   V
Sbjct: 260 QSLRFEFGLDNFIQVNAAVNQQMLSQAINWLALDKNEKVLDLFCGIGNFSLVMATNALAV 319

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE  + SV+ A++N A N ++N +      ++ +Q M  +  F+           +  
Sbjct: 320 VGVEGVESSVQMAKHNSALNQLSNTQFYC---QDLSQDMASQAWFSE---------HYDV 367

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
           + +DP R+G  +    + ++ +  ILY+SC+P +L RD  +++    T++++AL + FP+
Sbjct: 368 LVLDPSRTGAFEILQQLKLKRFKRILYVSCDPVTLARDSQLITQAGFTLDKIALMNMFPH 427

Query: 353 TRHMECGVLLVRK 365
           T H+E  VL V++
Sbjct: 428 TGHIETMVLFVKR 440


>gi|227329137|ref|ZP_03833161.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 449

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 141/358 (39%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
           Q + K   L ++M      ++P   +    P  YR RA   ++    +   +M  +Q+  
Sbjct: 105 QQSSKTAALMRLMTRETGAELPAASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNS 164

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + I         + AL+  +   +     ++ +L  ++ + +++   +V     R L
Sbjct: 165 HDLVDIKACPVLRPELEALLQPLRDCLSRLKAVK-RLGHVELVQAENGPLLVL----RHL 219

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D         LRD    +   + L   A+        + V          L        F
Sbjct: 220 DPLHSSDQQALRDFAQQQGVSVYLAPDADSLTRLQGEEPV-----YHVAGLTLAFSPRDF 274

Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   LA      Q  +L+L+CG GNF+L LA+    V+ VE     VE 
Sbjct: 275 IQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEK 334

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            R N   N ++NV     + ++             +      +  F  I +DP R+G   
Sbjct: 335 GRENAQRNGLSNVTFFHQNLED------------DVTQQPWAAQGFDKILLDPARAGAAG 382

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
               + +  P  ++Y+SCN  +L RD   +L+  + +  +A+ D FP+T H+E   L 
Sbjct: 383 VMEQITRLAPERVVYVSCNATTLARDSKVLLAAGYRLANVAMLDMFPHTGHLESMALF 440


>gi|227114811|ref|ZP_03828467.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 449

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 140/358 (39%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
           Q + K   L ++M      ++P   +    P  YR RA   ++    +   +M  +Q+  
Sbjct: 105 QQSSKTAALVRLMTRETGAELPEASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNS 164

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + I         + AL+  +   +     ++ +L  ++ + +++   +V     R L
Sbjct: 165 HDLVDIKACPVLRPELEALLQPLRDCLSRLKAVK-RLGHVELVQAENGPLLVL----RHL 219

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D         LRD    +   + L   A+        + V          L        F
Sbjct: 220 DPLHSSDQQALRDFAQQQGVSVYLAPDADSLTCLQGEEAV-----YHVAGLTLAFSPRDF 274

Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   L       Q  +L+L+CG GNF+L LA+    V+ VE     VE 
Sbjct: 275 IQVNDAVNQQMVAQALTWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEK 334

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            R N   N ++NV     + ++             +      +  F  I +DP R+G   
Sbjct: 335 GRENAQRNGLSNVTFFHQNLED------------DVTQQPWAAQGFDKILLDPARAGAAG 382

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
               + +  P  ++Y+SCN  +L RD   +L+  + +  +A+ D FP+T H+E   L 
Sbjct: 383 VMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLDMFPHTGHLESMALF 440


>gi|150021420|ref|YP_001306774.1| RNA methyltransferase [Thermosipho melanesiensis BI429]
 gi|149793941|gb|ABR31389.1| RNA methyltransferase, TrmA family [Thermosipho melanesiensis
           BI429]
          Length = 435

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/380 (21%), Positives = 155/380 (40%), Gaps = 36/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVD-RLRQMML--AFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDD 57
               L  +Y++QL  K    L Q++      + N++I RS    +YR++ EF +  +   
Sbjct: 76  GCDFLDLKYDKQLEIKKQVFLEQLLRISGLNIKNVEIERSNFEYNYRLKMEFSVTRNKKL 135

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLL--RAKLFQIDYLTS 112
            +     +++   + I   +     +N ++    E++    +         L  I    S
Sbjct: 136 GFK---RKKSNRVVEIKKCLIAPKPMNQVLDVLPEILDAFNVSVYNGRNGVLKNIVLRYS 192

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VD 168
              + +V  +         ++ A  L   +      + ++   +K  + L   Y     +
Sbjct: 193 PRGELMVVFVTKMENFKDAKKIANVLSKQVSLITSVVHVMNSNDK--VVLRGPYRILKGE 250

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVL 227
             ++       ++    +F Q N  +   M++++         ++ L+L+ G G FS+ L
Sbjct: 251 GVISYEFSWEKFQVPPTAFFQNNFYVTEKMIDYLTKNLDLNGNEVVLDLFSGLGTFSIRL 310

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A     V+AV     SV+A R N   N + N+K +   + EF +   +            
Sbjct: 311 ALLSKFVVAVGSNHVSVKAGRANANINGLRNIKFIESDAYEFLKNSEK------------ 358

Query: 288 HSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
               F  + VDPPRSGL        +++    I Y+SCNP +  RDL +L   + I+ + 
Sbjct: 359 ---NFDVLVVDPPRSGLGKEMCNEILLRKPEKIAYVSCNPSTFSRDLKMLMELYEIKSIK 415

Query: 346 LFDQFPYTRHMECGVLLVRK 365
           LFD FP T H+E   +L RK
Sbjct: 416 LFDMFPQTYHIESIAILARK 435


>gi|47169345|pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
           Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
           Methyltransferase
          Length = 433

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 79/336 (23%), Positives = 130/336 (38%), Gaps = 27/336 (8%)

Query: 34  QIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM 91
           ++    P  YR RA   + +      L        + + + +      +  + AL+ ++ 
Sbjct: 118 EVIADVPWGYRRRARLSLNYLPKTQQLQXGFRKAGSSDIVDVKQCPILAPQLEALLPKVR 177

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
           A +      R  L  ++ + + S   +  L +   L  A RE   R     H+    + L
Sbjct: 178 ACLGSLQAXRH-LGHVELVQATSG-TLXILRHTAPLSSADREKLERFS---HSEGLDLYL 232

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQ 210
              +   +         E        L        F Q NAG+N   +   L       +
Sbjct: 233 APDSEILETVSG-----EXPWYDSNGLRLTFSPRDFIQVNAGVNQKXVARALEWLDVQPE 287

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L+L+CG GNF+L LA     V+ VE     VE  + N   N + NV     + +E  
Sbjct: 288 DRVLDLFCGXGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE-- 345

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329
                      +         F  + +DP R+G       +++  P  I+Y+SCNP +L 
Sbjct: 346 ----------DVTKQPWAKNGFDKVLLDPARAGAAGVXQQIIKLEPIRIVYVSCNPATLA 395

Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           RD  ++L   +TI RLA  D FP+T H+E  VL  R
Sbjct: 396 RDSEALLKAGYTIARLAXLDXFPHTGHLESXVLFSR 431


>gi|288574832|ref|ZP_06393189.1| RNA methyltransferase, TrmA family [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288570573|gb|EFC92130.1| RNA methyltransferase, TrmA family [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 454

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 141/392 (35%), Gaps = 40/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--IFRSEP--IHYRMRAEFHIWHDGDD 57
              L    Y+ QL  K   +R  M       +   +    P    YR +A F +  +   
Sbjct: 78  GCQLQHGSYDLQLEIKAKSVRDAMERIGRMRVDRLVCHPSPMQWGYRNKASFPVRSENGG 137

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE---------------PLLRA 102
                F   + +   ID        +  L ++   T+  E                LLR 
Sbjct: 138 EI-GFFRSGSHKLAPIDGCPVLMPHVEKLYVDFRDTVMPELKRNGVPFYDERRHKGLLRH 196

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +F+ +   S    A+VT +      +       RL++        +     +   +I  
Sbjct: 197 MVFRGNREGSLLALAVVTSLRDCRGKELLERSLARLKETTQTSFSGVWNENSSRGNRILG 256

Query: 163 DRD---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           +R    + D  +T             +F Q N      +     +      G ++ELY G
Sbjct: 257 ERSSTIWGDGVITEKISNYDLSYDGTAFFQVNPFQAERLFLRASSIVAERGGAVVELYAG 316

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +++LA+    VLAVE   P++E    N++ N ++NVK +   +++  + M      
Sbjct: 317 VGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVKGICNRAEDTVRTMVEA--- 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD-LSILS 336
                      +   I VDPPR G     +  V   +   ++Y+SCNP +L RD   ++S
Sbjct: 374 -----------KPDVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTLARDGAKLVS 422

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
               +  L  FD FP T H+E      R   G
Sbjct: 423 DGWELATLECFDLFPQTVHVETLASFKRTARG 454


>gi|312881712|ref|ZP_07741489.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309370602|gb|EFP98077.1| 23S rRNA 5-methyluridine methyltransferase [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 439

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 150/373 (40%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF--QVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDL 58
                      QL  K   L ++M  F   V +L+ + + E   YR RA   I  D    
Sbjct: 90  GCNQQHLSLTDQLRYKQKTLIELMSKFAGGVVSLEPVVQGETKGYRRRARISIKFDRKSQ 149

Query: 59  Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                   + + +   I +     + ++AL++ +   +  +      +  ++ +   +  
Sbjct: 150 QLNFGFRKKSSSQIANITHCPILDVSLDALLLPLYE-LFKQFTAPDSIGHLELVKGDNTT 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            IV     R +     +    L       K  + L+      +  +      ER   +  
Sbjct: 209 VIVI----RHIKPLHPKDQGSLEAFASENKLSLYLMPDTQTIERVVG-----ERAYYSEG 259

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
            +      N+F Q N  +N  M++  L+         +L+L+CG GNFSL +A+    V+
Sbjct: 260 GVRIPFEPNNFIQVNQMVNKAMIDQALSWLDINQSDRVLDLFCGLGNFSLPIAQRVKSVI 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     V+ A  N   NH+NN +  + + +E +      +E            +F  +
Sbjct: 320 GVEGIDVMVKKASENAKLNHLNNAEFFQANLEESSTKFSWAQE------------KFDKV 367

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DP R+G     +  + ++    ++Y+SCNP +L RD   L +  + +ERL + D FP+
Sbjct: 368 LLDPARAGAS-VIIDQISSFGASKVVYVSCNPATLARDSQSLIAQGYKLERLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V++
Sbjct: 427 TSHLESMALFVKE 439


>gi|293557121|ref|ZP_06675675.1| RNA methyltransferase, TrmA family [Enterococcus faecium E1039]
 gi|291600690|gb|EFF30988.1| RNA methyltransferase, TrmA family [Enterococcus faecium E1039]
          Length = 267

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 24/276 (8%)

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
           E  LR  + +  + + +    +VT        + + +A  E    +   +     +   +
Sbjct: 6   EGQLRHIIIRRGHYSHEMMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNV 65

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
              +K K+   RDY++++L        YR    SF Q N     ++ +  +   +  + D
Sbjct: 66  ILGDKEKVLYGRDYIEDQLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKD 121

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++ Y G G   L LA   D+V  +E+   ++E A++N   N + NV      +++  +
Sbjct: 122 IVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYEVGKAEKVMK 181

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLC 329
             +                +   I VDPPR GLD   +   ++  P  I+YISCNP +  
Sbjct: 182 KWQE------------KGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFA 229

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           RD  + +   + ++++   D FP T H+E     V+
Sbjct: 230 RDTKLFAEAGYAVKKVQPVDLFPQTHHIELVASFVK 265


>gi|300775961|ref|ZP_07085820.1| 23S rRNA (uracil-5-)-methyltransferase [Chryseobacterium gleum ATCC
           35910]
 gi|300505094|gb|EFK36233.1| 23S rRNA (uracil-5-)-methyltransferase [Chryseobacterium gleum ATCC
           35910]
          Length = 470

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 138/398 (34%), Gaps = 46/398 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
                   YE+QL  K + +   +      +       +   E   YR + EF   +   
Sbjct: 85  GCKWQNMSYEKQLDFKQEEVYNNIKRIGGIDDFETVPILGSEEQYFYRNKMEFSFSNARW 144

Query: 57  DLYHIM---FDQQTK------------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-- 99
              + +    +  +K            + + +          NA+ + +        L  
Sbjct: 145 LTQYEISSEENFGSKDALGFHIPGMWSKILDLKECFLQEDPSNAIRLAVKEYGVNNGLDF 204

Query: 100 -----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                    L  +    +   + +V    +R   +   +    L +     K  +  I  
Sbjct: 205 FDVRNQEGFLRTLMMRQNSKGEWMVLFQLYREEKENREKLFEFLLEKFPQIKTLVYAIN- 263

Query: 155 ANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
           + +     D D    + +  L      L ++    SF Q N    + +    L       
Sbjct: 264 SKQNDSIYDLDINVYFGEGYLMEEMDGLQFKIGPKSFFQTNYKQALELYRKTLEFADLKG 323

Query: 211 GDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +++ +LY G G  +  +AR+  +V+ +E  + +++AA  + A N + N        K+ 
Sbjct: 324 DEVVYDLYTGTGTIAQYVARNAKQVIGIESVQEAIDAAIEHAALNGLTNTTFYCGDMKDI 383

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDS 327
                         +   +  +   +  DPPR G+    V  +       ++Y+SCN  +
Sbjct: 384 FND-----------EFMANHPKADVLITDPPRDGMHQKVVEQILKLSPEKVVYVSCNSAT 432

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RDL+++   +T+ ++   D FP T H+E   LLV+K
Sbjct: 433 QARDLALMKDHYTLVKILPVDMFPQTHHVENIALLVKK 470


>gi|209525609|ref|ZP_03274147.1| RNA methyltransferase, TrmA family [Arthrospira maxima CS-328]
 gi|209493942|gb|EDZ94259.1| RNA methyltransferase, TrmA family [Arthrospira maxima CS-328]
          Length = 509

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 136/396 (34%), Gaps = 53/396 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSE-PIHYRMRAEFHIWHDG- 55
                   Y+ QL  K   +   +       + P   +  S   + YR +  + +     
Sbjct: 130 GCQWQHIDYDFQLEAKRGLVVNALTKMGGFIEPPVAPVLPSPQSLAYRNKVTYPLRLSST 189

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----------RAKL 104
             +    + + +   + ++        +N L+  +   I+    L           R   
Sbjct: 190 GQVQAGYYQKGSHRLINLNQCPVQDQRLNPLLANIKQDIQNRGWLVYDEQQHTGTIRHLS 249

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           F+I   T +    +V     L   +   D W +   +L                   T  
Sbjct: 250 FRIGRRTGEILLTLVVKDNKLPQLKEQADIWLQQYPQLVGVCLNINSDRTNAILGKNTHC 309

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219
            + + Y+ E        L  R   ++F Q N      +L  + +       ++L + YCG
Sbjct: 310 LIGKPYIHEIFA----DLKLRLTSDNFFQVNTEAAESLLSAISSELNLQGHEILVDAYCG 365

Query: 220 NGNFSLVLARHFD--------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            G F+L LA+           R + +E    +VE A  N   N +N+V+    + ++   
Sbjct: 366 IGTFTLPLAKQLGQNFPPGEIRAIGLESQAGAVEQAISNADLNDINHVEFRVGNVQKLLP 425

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLC 329
            +                ++   + +DPPR G D   +  +       I+YISC P +L 
Sbjct: 426 EI---------------PFQPDIVVLDPPRQGCDRTVIQTLLNLQPQRIVYISCRPVTLA 470

Query: 330 RDLSILSTT--HTIERLALFDQFPYTRHMECGVLLV 363
           RDL +L     + + ++   D FP T H+EC   L 
Sbjct: 471 RDLQLLCENGIYQLTKVQPADFFPQTSHVECAAFLT 506


>gi|218283356|ref|ZP_03489390.1| hypothetical protein EUBIFOR_01979 [Eubacterium biforme DSM 3989]
 gi|218215910|gb|EEC89448.1| hypothetical protein EUBIFOR_01979 [Eubacterium biforme DSM 3989]
          Length = 406

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 151/386 (39%), Gaps = 38/386 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFR-SEPIHYRMRAEFHIWHDGDDL 58
             +LL  +   Q  +K   +  ++     +V    +       HYR +       D   +
Sbjct: 11  GCSLLKLKPSMQADKKKKDVEVLVEKAHLKVRVGDVHMAKNDTHYRNKVIVGFAKDKGKV 70

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIEMMATIRLEPLLRAKLFQI 107
           Y  ++   +   ++ +  +    L+N            + +E+        LLR  L + 
Sbjct: 71  YSGLYASHSHRVVKTENCIMQPKLVNEIINKITELVGSMKLELYNERTGTGLLRHVLIRW 130

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-- 165
            +   ++D+ +V  +  + +  + +     L       K  +Q I    KT I L  +  
Sbjct: 131 GH---KTDEVMVVFVTSQKMFPSRKNMVRVLTSEFPQIKTIVQNINP-RKTSIVLQDEAI 186

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
             Y +  +      L      NSF Q ++     +           + D +L+ YCG G 
Sbjct: 187 VLYGNGMIHDELCGLDIAFSHNSFYQIHSEQCEVLYGLAKKMLDLKETDTVLDTYCGVGT 246

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L +     +V+ VE+   ++E A+YN   N + N++ V M S EF +  R+       
Sbjct: 247 IGLTMTDSCKKVMGVEVNPDAIENAKYNAKQNKIKNIEFVAMDSTEFMRQARK------- 299

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTH 339
                +  R+  I +DPPR+G     +    A     ILYISC+P +  RDL+      +
Sbjct: 300 -----YHNRYDAIILDPPRAGTTKDFIECATALNPRKILYISCDPRTQVRDLNQFRKQGY 354

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
              +L L D FPYT H+E   +L +K
Sbjct: 355 VTNKLELVDLFPYTDHIESVCVLEKK 380


>gi|218248804|ref|YP_002374175.1| TrmA family RNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|257061863|ref|YP_003139751.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8802]
 gi|218169282|gb|ACK68019.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8801]
 gi|256592029|gb|ACV02916.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 8802]
          Length = 461

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 135/397 (34%), Gaps = 57/397 (14%)

Query: 2   SGTL---LIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIWH 53
            G     + D Y  Q   K + + Q +         P + I  S   + YR +  + +  
Sbjct: 82  GGCQWQHIDDSY--QRTVKQNHVIQSLERIGGFSDPPVVPILSSPEVLGYRNKVTYPLGR 139

Query: 54  DG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LR 101
                +    + + +   + ++        +N L+ ++   I  +             LR
Sbjct: 140 SATGKVQGGYYRRNSHHLVNLNQCPIQDARLNPLLADIKKDIEEQGWSIYDEENHQGRLR 199

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI----RLRDALHARKYQIQLIGRANK 157
              F+I   T +    +V+            +  +     L             +    +
Sbjct: 200 HLSFRIGRRTGEILLTLVSTSKTLQNLPEQAQTWLDRYPNLVGVALNHNPNPGNVIFGEE 259

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLEL 216
           T     R Y+ E        L      ++F Q N      +   ++          +++ 
Sbjct: 260 TLPIAGRPYISEIFA----GLELHLGSDTFFQINTEAAEILFNTLIEQLDLTGTETVIDA 315

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G FSL LA+   +V+ +E+   S+  AR N   N ++NV  +  + +     +   
Sbjct: 316 YCGIGTFSLPLAQRVKQVIGLEVNPNSISQARKNAQLNGIDNVSFLAGTVETLLPQL--- 372

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-------TVGMVQA--YPHILYISCNPDS 327
                       S     I +DPPR G D            +++     +++YISC P +
Sbjct: 373 ------------SCSPDIILLDPPRKGCDHQRRKDEATVTEILRNLQPSYLVYISCQPPT 420

Query: 328 LCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLL 362
           + RDL  L     + +  +   D FP T H+E   LL
Sbjct: 421 MARDLQKLCQGNLYDLLWVQPMDFFPQTAHVESVALL 457


>gi|293401173|ref|ZP_06645317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305299|gb|EFE46544.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 438

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 139/377 (36%), Gaps = 26/377 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEP-IHYRMRAEFHIWHDGD 56
              L+I +Y +QL  K D L+Q ++ +   N      +  S     YR + +     + +
Sbjct: 73  GCPLMIARYPRQLEYKKDVLKQSLIKYAQVNPRKIQNVLPSADIFGYRNQFKMPCAMEEN 132

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L   +F   +   + I         +  +   +M  +  +  L     Q   + +   +
Sbjct: 133 RLGSGLFMPNSNYFIDIRRCFVHEDELEKMRARIMDILNADGYLGYDHRQKSGIRNLVVR 192

Query: 117 AIVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRDYV----DER 170
                    ++          +     L       Q I    KT        +    ++ 
Sbjct: 193 GFDNRYQCTIITGEDELLPQTIDKLMRLPGMYSLWQSIHTIKKTPEIFGPKMIFLAGEKL 252

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           L +    L       SF Q N    + +   + +   G    ++E Y G G  SL L   
Sbjct: 253 LPLHLDGLDLEISPRSFFQLNTKQAIQLYRTIASMISGNHEFIVEAYSGIGAISLYLKDK 312

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              ++ +E  K +V  A  N   N   +V  V   +      + ++R             
Sbjct: 313 AKEIIGIESIKDAVVNANRNAKKNGCAHVSFVCDDAANKLVYLSKKRTI----------- 361

Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348
               + VDPPRSGLDDA +  +       I+Y+SCN  +L ++L++L + + +E++   D
Sbjct: 362 --DVLVVDPPRSGLDDAMLECILRSKIKEIVYVSCNAATLGKNLAVLQSCYHVEKVVPID 419

Query: 349 QFPYTRHMECGVLLVRK 365
            FP+T H+E   L+ RK
Sbjct: 420 MFPHTPHVETVCLMSRK 436


>gi|116513673|ref|YP_812579.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116092988|gb|ABJ58141.1| 23S rRNA m(5)U-1939 methyltransferase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 460

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 137/386 (35%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QL  K D L   +  +     +       I   +  HYR +A++ I  +   
Sbjct: 91  LAHLSYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPAPDQWHYRAKAQYQIERENHH 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +   ++   + + + +      S            LI  L + +    R  P ++  + +
Sbjct: 151 VSLGLYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVR 210

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
               + +    ++T+ +         +  +RL   +                NKT     
Sbjct: 211 QAEASQEMQVTLITVGHKLNNLLQLADEIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222
           ++ V E +      L       +F Q N      +    L          L++ Y G G 
Sbjct: 271 KNQVTEEIMGKKFAL----SPRAFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +V  A++N+  NHV N + ++ S ++    ++ +      
Sbjct: 327 LGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLQGSVEKLLPRLKED------ 380

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL  + +  +        +YISCNP +L +DL +L   + 
Sbjct: 381 ------GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYD 434

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   EC   L  + 
Sbjct: 435 VRVIENVDMLPQTPRCECIAKLTLRK 460


>gi|104773677|ref|YP_618657.1| methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
 gi|103422758|emb|CAI97391.1| Methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           11842]
          Length = 460

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 136/386 (35%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y  QL  K D L   +  +     +       I   +  HYR +A++ I  +   
Sbjct: 91  LAHLSYAGQLKFKKDNLVSALEKYHPRGYKNYKIKNTIPAPDQWHYRAKAQYQIERENHH 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
           +   ++   + + + +      S            LI  L + +    R  P ++  + +
Sbjct: 151 VSLGLYAPNSHQLIDLPEMPTQSEDTQATERAIRDLIIKLRVPIANRRRNLPGVKTIVVR 210

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
               + +    ++T+ +         +  +RL   +                NKT     
Sbjct: 211 QAEASQEMQVTLITVGHKLNNLLQLADEIMRLPKVVSVYQNETDWQNPQVWGNKTSKLRG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222
           ++ V E +      L       +F Q N      +    L          L++ Y G G 
Sbjct: 271 KNQVTEEIMGKKFAL----SPRAFFQLNPVQTATLYSEALKLLSLTPDMTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ A    +V+ +E    +V  A++N+  NHV N + +  S ++    ++ +      
Sbjct: 327 LGILAADQVKQVVGIESIPEAVLDAQHNVELNHVRNAEYLHGSVEKLLPRLKED------ 380

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL  + +  +        +YISCNP +L +DL +L   + 
Sbjct: 381 ------GLPIDALIVDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLVLLGEAYD 434

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   EC   L  + 
Sbjct: 435 VRVIENVDMLPQTPRCECIAKLTLRK 460


>gi|312888540|ref|ZP_07748110.1| 23S rRNA m(5)U-1939 methyltransferase [Mucilaginibacter paludis DSM
           18603]
 gi|311298987|gb|EFQ76086.1| 23S rRNA m(5)U-1939 methyltransferase [Mucilaginibacter paludis DSM
           18603]
          Length = 475

 Score =  227 bits (578), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 146/393 (37%), Gaps = 49/393 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIW-------HDGDD 57
           Y+ QL  K   +   +              +  S+ ++YR + E+           +  D
Sbjct: 93  YDAQLVYKQKSVIDSLQRLAKVELTGLIPILPSSQTVYYRNKLEYTFSNKRWLYDGENRD 152

Query: 58  LYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQI 107
               M            + + +++    +   N +   +    R   L    LRA    +
Sbjct: 153 DNVDMNALGFHVPGRFDKILEVNHCYLQADPSNQIRNRIGDYAREHQLSFYDLRAHEGAL 212

Query: 108 DYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-----KT 158
             L    ++ + + +V +++     +        +          + +I +         
Sbjct: 213 RNLVIRTSATTGELMVIVVFAYADQEQIDHLMAFVAAEFPQISSLLYIINQKKNDTIFDQ 272

Query: 159 KICLDR--DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LL 214
           ++   R  +Y+ E +   G+ + +R    SF Q N+   + + E +     G +G   + 
Sbjct: 273 EVIAYRGPEYIHEEMPSGGKMIRFRIGAKSFYQTNSIQALRLYE-ITRDFAGFKGHELVY 331

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LY G G  +  +A H   V+ VE    ++E A+ N   N + N K      K+   A  
Sbjct: 332 DLYTGAGTIANFIAAHVKEVVGVEYVPQAIEDAKINSGINGITNTKFFAGDMKDVLVA-- 389

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
                    D      +   I  DPPR+G+    V  +       I+Y+SCN  +  RDL
Sbjct: 390 ---------DFVAEHGKPDVIITDPPRAGMHPDVVNRLMEIEAEKIVYVSCNAATQARDL 440

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +L   + + ++   D FP+T+H+E  VLLV K
Sbjct: 441 LVLKEKYDVMKIQPVDMFPHTQHVENVVLLVLK 473


>gi|298242700|ref|ZP_06966507.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM
           44963]
 gi|297555754|gb|EFH89618.1| RNA methyltransferase, TrmA family [Ktedonobacter racemifer DSM
           44963]
          Length = 442

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 148/388 (38%), Gaps = 75/388 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSE-PIHYRMRAEFHIWHDGD 56
              L   QYE+QL  K + + +++       Q P L+    E P +YR +  F I  +G 
Sbjct: 110 GCQLQHLQYERQLTWKREMVGELLREIGHFEQPPLLETVACEIPWNYRNQMRFSINREGQ 169

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +  + T+  + +         IN  +  +       P +   + +    T Q   
Sbjct: 170 P---GLTARDTRRVLPLVSCPIAHERINRALTVLSQFENPRPQV---IVRYGVGTGQ--- 220

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
             + L   +  +   +     L                     IC      DE +     
Sbjct: 221 --MLLQPQQPEEVQQQLQEAGLT--------------------IC------DETIEEKLG 252

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVL--------AATKGIQGDLLELYCGNGNFSLVLA 228
             I+R   +SF Q N      M+  VL        A     Q  +++ YCG G F+L++A
Sbjct: 253 GKIFRIRPSSFFQTNTPQAEKMVRMVLDGLLAHRPAEKDPAQLTIVDAYCGVGTFALLMA 312

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
            HF R++A+E +  ++  A +N      NN++I++   ++    +               
Sbjct: 313 HHFGRIIAIEESPSAIRDAHWN--TRDTNNIEILKGKVEDVLPGL--------------- 355

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT---HTIER 343
           S +     +DPPR+G     +  +  YP   ++Y+SC P +L RDL +L      + +  
Sbjct: 356 SAQVDGFVIDPPRAGCQPVVLETLLRYPVERVVYVSCEPSTLARDLDVLCHGDETYQLVS 415

Query: 344 LALFDQFPYTRHMECGVLLVRKPSGWHQ 371
           +   D FP T H+EC  +L R     H+
Sbjct: 416 VQPLDMFPQTAHIECVAVLER---NKHE 440


>gi|167623152|ref|YP_001673446.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|226725389|sp|B0TK00|RUMA_SHEHH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|167353174|gb|ABZ75787.1| RNA methyltransferase, TrmA family [Shewanella halifaxensis
           HAW-EB4]
          Length = 445

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 140/374 (37%), Gaps = 28/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
              L     + Q   K   L  ++  F                 HYR RA    W D + 
Sbjct: 91  GCDLQHLDIDAQRKHKASTLVDLVNKFAQTQAGEVCDTLSDNAWHYRRRARLATWFDKNT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         + + + I      +  ++AL+ ++     L  L   K      LT   +
Sbjct: 151 KHISLGFRASSSSDVVEIQSCAVLAEPLSALIPDL--AFMLNQLSGKKALGHVELTQADN 208

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L   + L D   +   RL +  +  +  I L+   +     L+            
Sbjct: 209 GNFVVLRVTKALSD---KDKARLVEFANKHQV-IVLLQDDDAQCEHLNGAGEQPYYGFDD 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +       +F Q NA +N  M+   +        + +L+L+CG GNFSL LA+    V
Sbjct: 265 NQVKLNFSPGNFIQVNAQVNQAMVSQAVEWLSPKADERVLDLFCGIGNFSLPLAKDGAEV 324

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE  +  VE AR N   + ++ V          +  + +E    ++            
Sbjct: 325 IGVEGVQAMVEQARINAKQSGLDKVSFYHAD---LSADLSKEPWLGKV----------DK 371

Query: 295 IFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352
           + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   IL   + ++++ L D FP 
Sbjct: 372 MLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQLKKIGLVDMFPQ 431

Query: 353 TRHMECGVLLVRKP 366
           T H+E   L   K 
Sbjct: 432 THHLESMALFELKN 445


>gi|156932729|ref|YP_001436645.1| 23S rRNA 5-methyluridine methyltransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|226725380|sp|A7MQZ8|RUMA_ENTS8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|156530983|gb|ABU75809.1| hypothetical protein ESA_00518 [Cronobacter sakazakii ATCC BAA-894]
          Length = 432

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 79/357 (22%), Positives = 135/357 (37%), Gaps = 30/357 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ--QTKER 70
           Q   K   L +MM        ++       YR RA   +          M  +   + + 
Sbjct: 100 QQRSKAQALCRMMKR---EVDEVISGPAWGYRRRARLSLNFTPRKPGLQMGFRKAGSNDL 156

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +         + AL+ ++   +     +R  L  ++ +   S   +V     R L   
Sbjct: 157 VDVHRCPVLVPRLEALLPKLRDCLSSLDGVRH-LGHVELVDVTSGPLMVL----RHLKPL 211

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                 +L    H+    + L  +++  +         E        L        F Q 
Sbjct: 212 SAADREKLECFSHSEGVALYLAPQSDTLEHLNG-----EMPWYESDGLRLTFSPRDFIQV 266

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N  +N  M+   L   +   G+ +L+L+CG GNF+L LAR  + V+ VE     VE   Y
Sbjct: 267 NDAVNQQMVARALEWLEIQPGERVLDLFCGMGNFTLPLARRAESVVGVEGVAALVEKGDY 326

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N + NV   + + +E             +         F  + +DP R+G      
Sbjct: 327 NAGLNALKNVTFFQHNLEE------------DVTRQPWAQQGFDKVLLDPARAGAAGVMQ 374

Query: 310 GMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +V+  P  ++Y+SCNP +L RD   +L+  +   RLA+ D FP+T H+E   L  R
Sbjct: 375 HIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHTGHLESMALFER 431


>gi|237755943|ref|ZP_04584532.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691892|gb|EEP60911.1| 23S rRNA (uracil-5-)-methyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 419

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 78/375 (20%), Positives = 155/375 (41%), Gaps = 40/375 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
                   YE QL  K + L+  +L       +I       EP  YR +A+       D 
Sbjct: 73  GCDFQHTTYENQLLLKKEILKDQLLRIGKIETEIEKIIPSKEPFRYRNKAQLKF----DG 128

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                + + + + + +DY +     I  L+  +   +    ++ +    I   ++  ++ 
Sbjct: 129 KNLGFYKKDSNDLVNVDYCLLLKEDIEKLLNPLKKFLIKYAIMPS---NIHIFSNTKEEK 185

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHAR-KYQIQLIGRANKTKI--CLDRDYVDERLTVA 174
           ++   +   LD++     +   +        +I+ IG   K K    L  D V E +   
Sbjct: 186 LIRFEF---LDESQFSNIVYDMNIFREEIDGKIKGIGFYAKHKRYSLLGEDVVFENVG-- 240

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
                +R   +SF Q N     ++++ V++  K      +++ YCG G  ++  +++   
Sbjct: 241 --DHKFRVSMDSFFQVNVYQIKNLIDEVVSEIKDEGFKKMVDFYCGVGTLTIPASKYVKE 298

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
            L +E  + +V+ A+ NI  N + NVK ++  +++  +                  +  +
Sbjct: 299 ALGIESNEEAVKDAKANIKHNKLKNVKFLKAQTEKGLKY--------------AKDFLPE 344

Query: 294 TIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
            +  DPPRSGL+      +  +Q    I+Y+SC+P +L RDL   L     ++++ L D 
Sbjct: 345 AVIFDPPRSGLNRKIVNEISQIQTVRKIIYVSCDPSTLSRDLRQFLENGFRLKKVKLIDM 404

Query: 350 FPYTRHMECGVLLVR 364
           FP T H+E   +L R
Sbjct: 405 FPQTYHIESISVLER 419


>gi|241895890|ref|ZP_04783186.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides
           ATCC 33313]
 gi|241870933|gb|EER74684.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella paramesenteroides
           ATCC 33313]
          Length = 458

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 136/379 (35%), Gaps = 40/379 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           +YE QL  K  ++ +   A  +       I    P HYR +    I  DGD L      +
Sbjct: 93  RYEAQLKLKQFQVEKFYAAAGIDANIAPTIGMENPTHYRNKTVVPIKRDGDKLVTGFIKR 152

Query: 66  QT-KERMRIDYFMPGSLLI-----------NALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           +T  E + +  +     +I           NA  I + +    +  +R  + +  Y + +
Sbjct: 153 RTPGEILPLSDYYVNDPVIDQTIGTVRDILNAHHISVFSDETQQGEMRYIMVRRGYYSHE 212

Query: 114 SDQAIV----TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +V    T+     + +        +R  +     +   +  +   +     D + +
Sbjct: 213 LMVVLVAQTATIKDEMAIANEIAAIVPGIRSVVLNHNPRALHLLMSGDNRTLWGADAIHD 272

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228
            L      + +    NSF Q N      +       A       +++ Y G G   L +A
Sbjct: 273 TLL----GIEFEIGPNSFYQVNPQTTEVLYALAARKAELKPTDTVIDAYSGIGTIGLTVA 328

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               +VL VE+ + +V  A+ N+  N V N   +   +       ++E            
Sbjct: 329 SQVKQVLGVEVIERAVIDAQKNVMNNQVKNATFITADAPAQMHRWQQE------------ 376

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIE-RL 344
                 IFVDPPR GL +  +  V        +Y+SCNP ++ RD   L      I+  +
Sbjct: 377 GLHANVIFVDPPRRGLTNELLDAVTEMRPDRFVYVSCNPATMARDAKYLIEQGFHIKGDV 436

Query: 345 ALFDQFPYTRHMECGVLLV 363
              DQFP T H+E   +  
Sbjct: 437 QPLDQFPQTAHVEVVTVFE 455


>gi|221194774|ref|ZP_03567831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC
           49626]
 gi|221185678|gb|EEE18068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC
           49626]
          Length = 468

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 138/376 (36%), Gaps = 42/376 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           YE QL EK   +   +             +    +   EP  YR + E      G     
Sbjct: 111 YESQLREKKAGVVSALERIGHFSPKETSDLVRDIVAPGEPWGYRNKIELAFKRVGRKTLV 170

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAIV 119
            M+    ++ +RI            ++  +   +  L       + +I   TS+  + + 
Sbjct: 171 GMYAPNGQDIVRIKDCPLLDKAHEKIVGAVSGALSYLSGSHELDIERIGIRTSRRTKDVE 230

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR--- 176
             ++         + A  L DA  A      +   ++K +         ERL+ AG    
Sbjct: 231 VALWTAPGGFPRAQVARVLEDATGATSIVRVMTKGSSKARRIAG----VERLSGAGSWSE 286

Query: 177 ---TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
                  R    SF Q N      ++E VL+A      D  ++LYCG G F+L LAR   
Sbjct: 287 LIGDERMRVSAPSFFQVNTKGAEKLVELVLSALDVRDSDEAMDLYCGAGTFTLPLARRVG 346

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V AVE   P+V   R N+     +NV  +   +                 D D      
Sbjct: 347 FVSAVESYGPAVRDLRRNLEDAGWSNVDAIGGDAG------------RSFPDTDA----- 389

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348
             I VDPPR+GL    V  +  Q+   I Y+SC+P +L RDL     + T     +   D
Sbjct: 390 DVIVVDPPRAGLAPDVVKQLSEQSARAIAYVSCDPATLARDLRRFVDAGTFKPVSVTPVD 449

Query: 349 QFPYTRHMECGVLLVR 364
            FP T H+E  VL+ R
Sbjct: 450 LFPQTFHVENVVLMSR 465


>gi|160915380|ref|ZP_02077592.1| hypothetical protein EUBDOL_01388 [Eubacterium dolichum DSM 3991]
 gi|158432771|gb|EDP11060.1| hypothetical protein EUBDOL_01388 [Eubacterium dolichum DSM 3991]
          Length = 542

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 152/386 (39%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIW-HDG 55
              L+I +Y  QL  K   L+Q ++ +   + +     I   E   YR + +  +  +  
Sbjct: 73  GCPLMIAKYPAQLQYKRSLLKQSLIKYAQVDPRKVEKVIGSEEIFGYRNQCKLPVSLNKE 132

Query: 56  DDLYHIMFDQQTKERMRIDYFMP---GSLLINALMIEMMATIRLEPLLRAKLFQIDYLT- 111
             L    +   +     +   +    G   I   +IE++    ++P        I  L  
Sbjct: 133 GQLCSGFYLPNSNIFTEMKKCIVHDRGVERIRHEVIEVLKRFGIQPYNHHTKSGIRSLVV 192

Query: 112 ----SQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHARKYQIQLIGRANKTKICLD 163
                +    +VT               IR    L  ++H  K   ++ G   K  + L 
Sbjct: 193 RGFDGKYQCTLVTGHDELSCSLIEDILHIRGMYSLWQSIHTVKNTAEVFG---KQMVHLG 249

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
               +++L      L       SF Q N      + + + +  KG +  ++E Y G G  
Sbjct: 250 ---GEKQLPFHFDGLDLEVSPRSFFQLNTAQAKVLYQTIASLVKGHKKRIVEAYSGIGAI 306

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL L    D ++ +E  K +V  A  N   NH  +V+ +   +      + + +E     
Sbjct: 307 SLYLRDKADEIIGIETIKDAVVNANQNAKRNHCEHVRFLCDDAASKLTYLSKNKEI---- 362

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341
                      + VDPPRSGLDDA +  +       I+Y+SCNP +L ++L++L   + +
Sbjct: 363 ---------DVLVVDPPRSGLDDAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEKYRV 413

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPS 367
           +R+   D FP T+H+E  VLL  K +
Sbjct: 414 QRVIPIDMFPNTQHVETVVLLSHKKA 439


>gi|77460439|ref|YP_349946.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
           Pf0-1]
 gi|91207809|sp|Q3K8E9|RUMA_PSEPF RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|77384442|gb|ABA75955.1| 23S rRNA m(5)U-1939 methyltransferase [Pseudomonas fluorescens
           Pf0-1]
          Length = 461

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 146/371 (39%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--G 55
             ++    + +QLA K   L + +        +            YR RA   +  D   
Sbjct: 99  GCSVQHLPHNEQLALKQRMLAEQLSRVAGAEPEEWAAPLTGPEFGYRRRARIAVRWDSKA 158

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L        +++ + I         +  +M  +   +R     +A L  ++  +  S 
Sbjct: 159 KKLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPEMLRRLSKPQA-LGHVELFSGSS- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L +   L +A       L+D     + Q+ L G      +  D   +   L    
Sbjct: 217 -LAVLLRHMAPLSEA---DLTILKDFCAFHEAQLWLHGEGEPQPVD-DAQSLGYHLEQWD 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L YR     F Q NAG+N  M+   L   K    + +L+L+CG GNF+L LA+    V
Sbjct: 272 LQLAYR--PGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCGLGNFALPLAKAAREV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  V+ A  N A+N+++N K  +    +             L D +     F  
Sbjct: 330 VAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQ------------PLTDAEWIGNGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    +       ++Y+SCNP +L RD + ++   + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|67469205|ref|XP_650594.1| RNA methyltransferase [Entamoeba histolytica HM-1:IMSS]
 gi|56467236|gb|EAL45208.1| RNA methyltransferase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 479

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 154/396 (38%), Gaps = 50/396 (12%)

Query: 2   SGTLLIDQ-YEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPI--HYRMRA--EFHIWHDG 55
            G L     Y+ QL  K  ++ QM+    +       ++ PI   YR R    F   + G
Sbjct: 102 GGCLYQSMGYQHQLEMKKTQVLQMINKEIKDYQFDGIKASPINIGYRNRMDYTFGDGYIG 161

Query: 56  DD---LYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLR 101
                  H M+     + +            N L            I     I+    LR
Sbjct: 162 GPLECGLHKMYHF--NDVVTTIDCRIVDKDFNELLLFTRDYFRIKNIPHYNKIKHTGYLR 219

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRA 155
             L +    T++    ++T     +  +  +   +      +L   +H     I  I   
Sbjct: 220 NLLIRKAKKTNEIMYCLITSSQLNVDLNELKNKLLELPLMGKLVSIIHCIFDDITDIVGY 279

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL- 214
           +K  +    DY+ E L      L ++    SF Q N+     + + V      I+ D++ 
Sbjct: 280 DKMNVLYGNDYITEELL----GLHFKITPMSFFQTNSLGAEVLYQTVRDYITTIRCDIIF 335

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G  + +L+    +++ VE+ + ++ AA+ N   N + N +              
Sbjct: 336 DLYCGTGTITQLLSPICKKIIGVELNQDAIRAAKLNAELNKLTNCEFRAADVN------- 388

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDL 332
              E ++L++      R + I +DPPR+G+    +  +  Y    I+Y+SC P +L RDL
Sbjct: 389 --IELDQLQE-----NRPELIVLDPPRTGIHPNALSKIIKYGAQTIVYVSCMPTTLIRDL 441

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
            +L    + ++ + L D FP T H+E   LL +  S
Sbjct: 442 IVLEQNGYKVKNITLVDMFPNTPHVETVCLLKKINS 477


>gi|254430408|ref|ZP_05044111.1| 23S rRNA (uracil-5-)-methyltransferase [Cyanobium sp. PCC 7001]
 gi|197624861|gb|EDY37420.1| 23S rRNA (uracil-5-)-methyltransferase [Cyanobium sp. PCC 7001]
          Length = 451

 Score =  226 bits (577), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 152/395 (38%), Gaps = 50/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHI-WHDGD 56
             +L   + + Q   K +R+++ +             +     + YR RA   +      
Sbjct: 77  GCSLQHLRDDLQSRWKGERVQEALERIGGLTTPVEAVVAAPACLGYRNRAIVPLERRADG 136

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L    + + T   + +++       ++AL+  +   +                LR    
Sbjct: 137 SLRAGYYRRGTHRIVNMNHCPVLDPRLDALIAPLKQDLEASGWPVDRELEGQGGLRHLAL 196

Query: 106 QIDYLTSQSDQAIVTLIYHRLLD------DAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           ++ + T +    +V+   H  L+      +AWR    ++       + Q         T+
Sbjct: 197 RLGHHTGEVLLTLVS--SHAELEGLASRAEAWRTRWPQIVGVTLNLQPQPTNTLLGPHTE 254

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
           +   R ++ ER          R   ++F Q N      +L  +  A +G+   LL + YC
Sbjct: 255 LVAGRSWLRERFC----GEELRIASDTFFQVNTAQAERVLPSLQHALEGLTPGLLVDAYC 310

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRRER 277
           G G FSL LAR   RV  +E    +V  A  N + N +                      
Sbjct: 311 GIGTFSLPLARGGWRVHGLERNPEAVRLAALNASINGLSELASFEAGDVAALLPPWL--- 367

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335
                        R + +F+DPPR GLD A +  +QA   P +LY+SC+P +L RDL +L
Sbjct: 368 ------------PRCQALFLDPPRRGLDGAVMAALQASSPPLLLYLSCDPATLARDLGLL 415

Query: 336 ST--THTIERLALFDQFPYTRHMECGVLLVR-KPS 367
           +    +T+ R+   D FP T H+E   +L R +PS
Sbjct: 416 TRSCGYTVSRVQPLDFFPQTSHIETLAVLRRAEPS 450


>gi|315635030|ref|ZP_07890311.1| 23S rRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC
           33393]
 gi|315476292|gb|EFU67043.1| 23S rRNA (uracil-5-)-methyltransferase [Aggregatibacter segnis ATCC
           33393]
          Length = 438

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 161/364 (44%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDL--YHIMFDQ 65
           E Q + K   L Q +   Q   +    + + EP HYR R    +  D  +      +  +
Sbjct: 98  ELQRSAKQTALVQRLSRLQPVPIHFMPLLQGEPWHYRRRVRLSVLLDSKNRKLNIGLRRK 157

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            +++ + I++ +     +N L+ ++ A +  +  +  +L  I+ + + +  A++     +
Sbjct: 158 NSQQIIPIEHCLVLEQPLNDLLPKLTA-LFSQWSMPQQLGHIELVAADNGIAMLLRHI-K 215

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            + +  R   +R      A ++Q+ L  + + +   ++  Y ++     G  +  +    
Sbjct: 216 NVGETDRTLLLRF-----AEQHQLMLFVQEHDS---IEHWYGEQPYYRLGDDITLQFDIR 267

Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q NA +N  M+   L       Q  +L+L+CG GNF+L L+R     + +E     V
Sbjct: 268 DFIQINAQLNRQMIATALDWLELNPQDHVLDLFCGMGNFTLPLSRKVKSAVGIEGVSAMV 327

Query: 245 EAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           E AR N   N  +NV+  R    + F      ++ FN+             I +DPPR+G
Sbjct: 328 EKARANAERNGCHNVQFYRTDLDKPFISQAWAQQPFNK-------------ILLDPPRTG 374

Query: 304 LDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
              A   + Q     ILY+SCNP +L RD  IL    + ++++A+ D FP T H+E   L
Sbjct: 375 AAFALNALCQLQAESILYVSCNPATLVRDTEILRDAGYQLDKVAMIDMFPQTGHLESISL 434

Query: 362 LVRK 365
             ++
Sbjct: 435 FRKR 438


>gi|220934276|ref|YP_002513175.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995586|gb|ACL72188.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 446

 Score =  226 bits (576), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 139/377 (36%), Gaps = 32/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
             +L       Q+  K   + +++                     YR +A   + +    
Sbjct: 87  GCSLQHMSDAAQVHAKQQAVLEVLEHVGKVVPAHILDPLQAHAWGYRRKARLGVKYVPKK 146

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   ++ +     ++        +   ++ +   +      R ++ Q++      D
Sbjct: 147 GGALVGFRERYSHYLATLEACEVLHPSVGRRIMILRDFLSTLDA-RDRIPQVEVAVDDED 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +   T +  R LD        RL+    A+  Q+ L  +   T   L  +   E L  A 
Sbjct: 206 R---TALVFRNLDALSDADMERLKTFAAAQDVQVWLQPKGPDTVHPLSPEQ-PEPLYYAH 261

Query: 176 RTLIYRQI--ENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232
                R       F Q N  IN  M+   +     G +  +L+L+CG GNFSL LAR   
Sbjct: 262 PDFDVRIPFGPLDFVQVNRDINRAMVPRAIELLEVGPEHRVLDLFCGLGNFSLPLARRAG 321

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--SKEFTQAMRREREFNRLKDIDIHSY 290
            V+ VE     V  AR N   N + NV+       +++   A      F+R         
Sbjct: 322 HVVGVEGEAVMVARARDNAEHNGIRNVEFHAADLAARDVIDAPWARAGFDR--------- 372

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL--STTHTIERLALF 347
               I +DPPR+G       + +   P I+Y+SCNP +L RD   L  S  + +E   + 
Sbjct: 373 ----ILLDPPRAGAAGVMKLLGRLNVPRIVYVSCNPATLARDADTLVHSLGYRLEAAGVM 428

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H+E   + V+
Sbjct: 429 DMFPHTAHVESMAVFVK 445


>gi|121730717|ref|ZP_01682830.1| cell division protein FtsY [Vibrio cholerae V52]
 gi|121627713|gb|EAX60357.1| cell division protein FtsY [Vibrio cholerae V52]
          Length = 209

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 95/202 (47%), Positives = 139/202 (68%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            + Y+ QLA+K+ RL+ M + + +P L++F S   +YRMRAEF IWH+GDD+Y+IMF+Q+
Sbjct: 8   PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           T+E+ R+D F   S LIN LM  +M  ++  P+LR KLFQ+D+L++ S + +V+L+YHR 
Sbjct: 68  TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L + W   A  L+  L+   + + LIGRA K K+ LDRDYV E L V G+  +Y+Q+ENS
Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187

Query: 187 FTQPNAGINVHMLEWVLAATKG 208
           FTQPNA +   MLEW +  T+ 
Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQE 209


>gi|172036253|ref|YP_001802754.1| putative 23S rRNA methyltransferase/RumA [Cyanothece sp. ATCC
           51142]
 gi|171697707|gb|ACB50688.1| putative 23S rRNA methyltransferase/RumA [Cyanothece sp. ATCC
           51142]
          Length = 455

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 150/377 (39%), Gaps = 45/377 (11%)

Query: 11  EQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIWH-DGDDLYHIMFD 64
           E QL  K +++ Q +         P L I  S   + YR +A + +      ++    + 
Sbjct: 92  EYQLTAKENQVIQALKRLGGFENPPVLPILSSPEILGYRNKATYPLRRSTTGNVQAGYYQ 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113
           + T + + ++        +N ++ ++   I+ +             LR    +I   T +
Sbjct: 152 RNTHQLINLNQCPIQDPRLNPILAQVKQDIQAQGWSIYNETTGTGKLRHLGLRIGKRTGE 211

Query: 114 SDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +V+    L + +   ++W +    L                  +T   + R Y+ E
Sbjct: 212 ILLTLVSTSKNLTHFQQQAESWLQRYPDLVGVSVNYNPHQGNKIFGEETFNSVGRLYLTE 271

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA 228
                   L ++   ++F Q N      +L+ +L       + +L++ YCG G F+L LA
Sbjct: 272 TFG----ELNFQLSSDTFFQVNTEAAEILLKVLLDKLCLTGKENLVDAYCGVGTFTLPLA 327

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   + + +E  K ++E  + N   N +NNVK  + + ++    +               
Sbjct: 328 KKVAQAVGIESNKNAIEQGKNNADMNGINNVKFYQGTVEKILPFLN-------------- 373

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTIERL 344
                 I +DPPR G D   +  ++  + P I+YISC P +L RDL  L     +T+E +
Sbjct: 374 -LDPDIIVLDPPRKGCDRNVIHTLKEISPPIIIYISCQPSTLARDLEKLCQQDLYTLEWI 432

Query: 345 ALFDQFPYTRHMECGVL 361
              D FP T H+E   L
Sbjct: 433 QPIDFFPQTPHVESVAL 449


>gi|229815568|ref|ZP_04445895.1| hypothetical protein COLINT_02618 [Collinsella intestinalis DSM
           13280]
 gi|229808798|gb|EEP44573.1| hypothetical protein COLINT_02618 [Collinsella intestinalis DSM
           13280]
          Length = 437

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 135/373 (36%), Gaps = 34/373 (9%)

Query: 9   QYEQQLAEKVDRLRQMML---AFQVPNLQIFR------SEPIHYRMRAEFHIWHDGDDLY 59
            +E QLA K + LR  +     F    +           EP  YR + E     +G    
Sbjct: 81  SHESQLAAKEENLRSALTRIGKFSPEEVAELMRPIRHTKEPWGYRNKVELAPVREGGKFR 140

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAI 118
             M  +   + +++D            +  +   +      R   L ++   +S+   A+
Sbjct: 141 LGMHGRDASQVIKVDSCPLFDKKHAKAIKAVTGALGFLGNSRDLELERVGIRSSRRTGAL 200

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--DERLTVAGR 176
              ++         + +  L DA+ A      +     + +     + +  +   T    
Sbjct: 201 EIALWTPTGAFPRAQVSRVLSDAVRATSVVRVMSKGEKRARRVAGVEALAGEGSWTEKIG 260

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVL 235
               R    SF Q N      +++ V+ A      +  ++LYCG G F+L LAR  D V 
Sbjct: 261 EENMRLSAPSFFQVNTKAAEILIDLVMEALDPQPDEFGIDLYCGAGTFTLPLARRCDFVS 320

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AVE   P+V   R N+   ++ NV ++   +                 D D        +
Sbjct: 321 AVESYGPAVRDLRRNLDIANLTNVDVIGGDA------------VREFPDEDA-----DVL 363

Query: 296 FVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
            VDPPR+GL    + ++ +     + Y+SC+P +L RDL       T         D FP
Sbjct: 364 VVDPPRAGLAPEAIRLIASTSARDVAYVSCDPATLARDLRRFVEEGTFRPVWATPVDLFP 423

Query: 352 YTRHMECGVLLVR 364
            T H E  V L R
Sbjct: 424 QTFHCETVVRLTR 436


>gi|313898679|ref|ZP_07832214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
 gi|312956563|gb|EFR38196.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
          Length = 438

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 152/383 (39%), Gaps = 38/383 (9%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGDD 57
             L+I +Y  QL  K D L+Q ++ +   + +         +   YR + +     +   
Sbjct: 74  CPLMIARYPAQLEYKQDLLKQSLIKYAQIDPRKVARVKASEDVFGYRNQFKLPCAMEEGR 133

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ--------IDY 109
           L   +F   +   + +         +  + +++M  +     +              +  
Sbjct: 134 LVSGLFMPNSNYFIDVKKCWIHEDGLERVRMDIMHVLNTHDCVSYNPHDKKGIRNLVVRG 193

Query: 110 LTSQSDQAIVT---LIYHRLLDDAWRECAIR-LRDALHARKYQIQLIGRANKTKICLDRD 165
             ++    IVT    +  RL+ D  R   +  L  ++H  K   ++    NK        
Sbjct: 194 FDNRYQCTIVTGNEELDERLISDLMRIKGLTSLWQSIHTIKKTPEV--FGNKMMHLAG-- 249

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
             +  L +    L  R    SF Q N+   V +   + +  K     ++E Y G G  SL
Sbjct: 250 --ETSLAMELDGLKLRISPRSFFQLNSKQAVQLYRTIASMVKENNELIVEAYSGIGAISL 307

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            L      ++ +E  K +V  A  N A N   +V  +   +      + ++R        
Sbjct: 308 YLKDKAKEIIGIESIKDAVVNANQNAALNGCEHVSFLCDDAANKLTYLSKKRSI------ 361

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + VDPPRSGLDDA +  +      +I+Y+SCNP +L ++L++L + + ++R
Sbjct: 362 -------DVLVVDPPRSGLDDAMLECILRSKIKNIIYVSCNPATLGKNLAVLCSRYNVDR 414

Query: 344 LALFDQFPYTRHMECGVLLVRKP 366
           +   D FP+T H+E  VL+ RK 
Sbjct: 415 IQPIDIFPHTPHVESVVLMSRKN 437


>gi|325920673|ref|ZP_08182583.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas gardneri ATCC
           19865]
 gi|325548863|gb|EGD19807.1| 23S rRNA m(5)U-1939 methyltransferase [Xanthomonas gardneri ATCC
           19865]
          Length = 444

 Score =  226 bits (575), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 140/376 (37%), Gaps = 31/376 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L      QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 88  GCVLQHLDESQQIVAKQRVLMDNLERIGHVTPQAILPALVGDNWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  + A +      +  + QI+++    D
Sbjct: 148 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPLLAALVEGLD-GKRDIPQIEFIAG--D 204

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173
           +A+V  I H  +          L +   A  + I L     ++   L   +  +  RL  
Sbjct: 205 EAVVLTIRH--MQPLSERDLQALTEFAQAHDFAIFLQPGGVESVHPLWPQQVPLSFRLPQ 262

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR   
Sbjct: 263 WDVELAFR--PLDFIQVNASLNQKMIAHALALLDARPEDRVLDLFCGLGNFTLPLARGVR 320

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE     V  AR N   N ++N +     + + TQ  R      +          F
Sbjct: 321 EVVGVEGDAGLVARARENAQRNGLDNAQFH---AADLTQDQRHTAWMRQ---------GF 368

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
             + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T++     D 
Sbjct: 369 DKLLLDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTLKAAGAMDM 428

Query: 350 FPYTRHMECGVLLVRK 365
           FP+T H+E   +  R+
Sbjct: 429 FPHTAHVESIAVFERR 444


>gi|188996180|ref|YP_001930431.1| RNA methyltransferase, TrmA family [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931247|gb|ACD65877.1| RNA methyltransferase, TrmA family [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 419

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 153/375 (40%), Gaps = 40/375 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
                   YE QL  K + L+  +L       +I       EP  YR RA+       D 
Sbjct: 73  GCDFQHTTYENQLLLKKEILKDQLLRIGKIETEIEKIIPSKEPFRYRNRAQLKF----DG 128

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                + + + + + +D  +     I  L+  +   +    ++ +    I   ++  ++ 
Sbjct: 129 KNLGFYKKDSNDLVNVDNCLLLKEDIEKLLNPLKKFLIKYAIMPS---NIHIFSNTKEEK 185

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHAR-KYQIQLIGRANKTKI--CLDRDYVDERLTVA 174
           ++   +   LD++     I   +        +I+ IG   K K    L  D V E +   
Sbjct: 186 LIRFEF---LDESQFSNIIYDMNIFREEIDEKIKGIGFYAKHKRYSLLGEDVVFENIG-- 240

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
                +R   +SF Q N     ++++ V++  K      L++ YCG G  ++  +++   
Sbjct: 241 --DYKFRVSMDSFFQVNVYQIKNLIDEVVSEIKDKGFKKLVDFYCGVGTLTIPASKYVKE 298

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
            L +E  + +V+ A+ NI  N + NVK ++  +++  +                  +  +
Sbjct: 299 ALGIESNEEAVKDAKANIKHNKLKNVKFLKTQTEKGLKY--------------AKDFLPE 344

Query: 294 TIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
            +  DPPRSGL+      +  +Q    I+Y+SC+P +L RDL         ++++ L D 
Sbjct: 345 VVIFDPPRSGLNRKIVNEISQIQTVRKIIYVSCDPSTLSRDLRQFVENGFKLKKVKLIDM 404

Query: 350 FPYTRHMECGVLLVR 364
           FP T H+E   +L R
Sbjct: 405 FPQTYHIESISVLER 419


>gi|302379709|ref|ZP_07268194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312616|gb|EFK94612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           ACS-171-V-Col3]
          Length = 442

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 43/386 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAE--FHIWHDGDD 57
            G +    +Y+ +   K   L ++       ++    S     YR + E  F     G  
Sbjct: 76  GGCIYQKLEYDVECDLKKKTLTELYKDIYDKDITFHPSPFLQGYRNKMEYTFGDSVKGGP 135

Query: 58  LYHIMFDQQT----KERMRIDYFMPGSLLINALMIEMMAT--------IRLEPLLRAKLF 105
           L   +  +       + +  +    G   I   + E            I+   LLR  + 
Sbjct: 136 LVLGLHTKNKFYEITDNVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHFII 195

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA---WRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           +  +   +    +VT      ++D     ++   R+    H     I      +K ++  
Sbjct: 196 RKSFSEDEYMINLVTTSDEFDVNDFVEFAKQIDNRIVSIYHTINDNISDAVIVDKLELLY 255

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNG 221
            ++Y+ E++      L +R    SF QPN      +    L     + G ++ +LYCG G
Sbjct: 256 GKEYLTEKI----NGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGTG 311

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             + + A+  + V+ VEI + +VE A+ N   N + N K +      F + + ++     
Sbjct: 312 TIAQIFAKKSESVIGVEIVEEAVEKAKENAKLNGLTNTKFICDDCLNFMEKVEKK----- 366

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDL-SILSTT 338
                        + +DPPR G+    +  ++   P   +YISCNP +   DL   +   
Sbjct: 367 -----------DVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKG 415

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + I+ L  FDQFP T H E  V+L +
Sbjct: 416 YKIKSLEFFDQFPRTYHCEAVVMLEK 441


>gi|54310181|ref|YP_131201.1| 23S rRNA 5-methyluridine methyltransferase [Photobacterium
           profundum SS9]
 gi|46914622|emb|CAG21399.1| putative TrmA family RNA methyltransferase [Photobacterium
           profundum SS9]
          Length = 471

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 142/384 (36%), Gaps = 45/384 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------VPNLQIFRSEPIH 42
              L    ++ Q+  K   L  +M+ F                       +    +   H
Sbjct: 95  GCNLQHLSHQGQVLAKQQALSDLMVKFAGDQQVAVDKQRAGDQQRALFEQVTPIIAAEHH 154

Query: 43  YRMRAEFHIW-HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
           YR  A F +       L   +  +Q+K+ + +      +  +N L+  + + +      R
Sbjct: 155 YRRCARFSVLLGKDGQLQFGLRKKQSKDIVNVKQCPVLAESLNELLPPLRSLLSTLKGQR 214

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             L  I+ +  ++D   V LI H  L     +    + +    +   + L   ++  ++ 
Sbjct: 215 H-LGHIELI--EADNGRVVLIRH--LKPFSDKDMTLILNFAQEQNVILFLAPTSDDIELI 269

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
                  E        L        F Q N  +N  M+E           D +L+L+CG 
Sbjct: 270 HG-----ETPYYRLDDLTLHFSPKDFIQVNRDVNKKMVEQATDWLDLQPSDRVLDLFCGL 324

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNFSL LA+H   V+ VE     V  A  N   N  NN    + +  E    +   RE  
Sbjct: 325 GNFSLPLAKHAKAVVGVEGIDEMVHRATENAMCNKQNNATFYQANLDEDVTKLAWAREP- 383

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTT 338
                      F  I +DP R+G       +V+  P  ++Y+SCNP +L RD   +L   
Sbjct: 384 -----------FNKILLDPARAGAAGVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKG 432

Query: 339 HTIERLALFDQFPYTRHMECGVLL 362
           + +ERL + D FP T H+E   L 
Sbjct: 433 YQLERLGMLDMFPQTGHLESMALF 456


>gi|255074621|ref|XP_002500985.1| predicted protein [Micromonas sp. RCC299]
 gi|226516248|gb|ACO62243.1| predicted protein [Micromonas sp. RCC299]
          Length = 473

 Score =  225 bits (574), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 141/413 (34%), Gaps = 71/413 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---------IFRSEPIHYRMRAEFHIW 52
             T     Y  QL  K D++  +M      +           +   +   YR + EF   
Sbjct: 81  GCTWQDIAYAHQLTMKRDQVVDVMTRVAKVDQTRVQNIVGDCVPSDKTERYRNKMEFAFG 140

Query: 53  H--DGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRL------------- 96
              +G  +   +       + + I     G LL + +  E++   R              
Sbjct: 141 PGANGRGVVIGLRPSGNHSDLVEIGN-PDGCLLQHPVADEVLRGCRAHLDSNGNSSLLDA 199

Query: 97  ------EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALHA 144
                 E +LR+   ++    +    A V +      DD         E   ++R    +
Sbjct: 200 FNRRTGEGVLRSLTVRVAVDENGETIAAVDIAAATRGDDEDAALRGLAEAIAKVRGVASS 259

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
                   G + +    L        L +  R + +     SF Q N      ++  V  
Sbjct: 260 GGGDADGEGWSGEDVEVLSGAA---TLPMKLRGVTFALSAPSFFQTNTDQAEKLVAAVED 316

Query: 205 ATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A  G  GD    +L+L+CG G   L +A+    V   E+   +V+ A  N  AN + N  
Sbjct: 317 AC-GFSGDGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKDAERNAEANGITNAT 375

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHI 318
             R    +   ++                     +  DP R+G+D++ V +++      I
Sbjct: 376 FRRGDLAKLKASLPG----------------PDIVIADPARAGMDESLVKVLRSIGAERI 419

Query: 319 LYISCNPDSLCRDLSILSTT-------HTIERLALFDQFPYTRHMECGVLLVR 364
           +Y+SCNP +  RDL  L          + +      D FP+T H+E  V+L R
Sbjct: 420 VYVSCNPATQARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVETVVVLDR 472


>gi|50401424|sp|Q6LMS7|RUMA_PHOPR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 466

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 86/384 (22%), Positives = 142/384 (36%), Gaps = 45/384 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------------VPNLQIFRSEPIH 42
              L    ++ Q+  K   L  +M+ F                       +    +   H
Sbjct: 90  GCNLQHLSHQGQVLAKQQALSDLMVKFAGDQQVAVDKQRAGDQQRALFEQVTPIIAAEHH 149

Query: 43  YRMRAEFHIW-HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
           YR  A F +       L   +  +Q+K+ + +      +  +N L+  + + +      R
Sbjct: 150 YRRCARFSVLLGKDGQLQFGLRKKQSKDIVNVKQCPVLAESLNELLPPLRSLLSTLKGQR 209

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             L  I+ +  ++D   V LI H  L     +    + +    +   + L   ++  ++ 
Sbjct: 210 H-LGHIELI--EADNGRVVLIRH--LKPFSDKDMTLILNFAQEQNVILFLAPTSDDIELI 264

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
                  E        L        F Q N  +N  M+E           D +L+L+CG 
Sbjct: 265 HG-----ETPYYRLDDLTLHFSPKDFIQVNRDVNKKMVEQATDWLDLQPSDRVLDLFCGL 319

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNFSL LA+H   V+ VE     V  A  N   N  NN    + +  E    +   RE  
Sbjct: 320 GNFSLPLAKHAKAVVGVEGIDEMVHRATENAMCNKQNNATFYQANLDEDVTKLAWAREP- 378

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTT 338
                      F  I +DP R+G       +V+  P  ++Y+SCNP +L RD   +L   
Sbjct: 379 -----------FNKILLDPARAGAAGVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKG 427

Query: 339 HTIERLALFDQFPYTRHMECGVLL 362
           + +ERL + D FP T H+E   L 
Sbjct: 428 YQLERLGMLDMFPQTGHLESMALF 451


>gi|194366743|ref|YP_002029353.1| 23S rRNA 5-methyluridine methyltransferase [Stenotrophomonas
           maltophilia R551-3]
 gi|226725395|sp|B4SRK6|RUMA_STRM5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|194349547|gb|ACF52670.1| RNA methyltransferase, TrmA family [Stenotrophomonas maltophilia
           R551-3]
          Length = 444

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 136/376 (36%), Gaps = 31/376 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              L     +QQ+  K   L   +                 E   YR +  F +      
Sbjct: 88  GCVLQHLDEDQQIVAKQRVLMDNLERIGHVKPGTVLAPLVGESWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +Q  +    +   +     I    +E ++T       +  + QI+++    D
Sbjct: 148 DKTLVGFREQDPRFVADLSQCLTVIPEI-GTKVEALSTFIESLDGKRDIPQIEFIAG--D 204

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--ERLTV 173
           QA+V  + H  L                   + I L      T   LD   V    RL  
Sbjct: 205 QAVVLTVRH--LQPLSDADRAAWATFGQQHGFVIYLQSGGVDTVQPLDGQGVPLSFRLAP 262

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232
               L +R     F Q NA +N  M+   L     G    +L+L+CG GNF+L LAR   
Sbjct: 263 WDVELAFR--PLDFIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVR 320

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE     V  AR N   N + N +     S + TQ  R      +          F
Sbjct: 321 EVVGVEGDAGLVARARENAERNGLANAQFF---SADLTQDQRSTAWMRQ---------GF 368

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
             + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D 
Sbjct: 369 DKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDM 428

Query: 350 FPYTRHMECGVLLVRK 365
           FP+T H+E   +  ++
Sbjct: 429 FPHTAHVESIAVFEKR 444


>gi|186681361|ref|YP_001864557.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
 gi|186463813|gb|ACC79614.1| RNA methyltransferase, TrmA family [Nostoc punctiforme PCC 73102]
          Length = 468

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 142/388 (36%), Gaps = 45/388 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG- 55
                   Y+ QL  K +++ Q M           N  +     + YR ++ + +     
Sbjct: 84  GCQWQHINYDYQLVAKQNQVIQAMERIGGFVQPPVNPVLAAPSALGYRNKSTYPLGTSAT 143

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104
             +    + + + + + ++        +N L+ E+   I+ +             +R   
Sbjct: 144 GQVQAGYYQKGSHQLINLNQCPVQDARLNPLLAEVKQDIQRQGWQIYDEQRHQGKIRHLG 203

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +I   T +    +V   ++    +   +  ++    L      + L   +++T      
Sbjct: 204 LRIGRHTGEMLLTLVVKDWNLSGIETQAQEWLKRYPQL----VGVSLNRNSDRTNAIFGS 259

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219
           +         L      L ++   ++F Q        +L+ + +       +LL + YCG
Sbjct: 260 EIRCIAGVPHLRENFAGLEFQVRPDTFFQVYTETAEALLQVIQSELNLQGHELLVDAYCG 319

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L LA+       +E+   +VE A  N   N ++NV  +  + ++    M      
Sbjct: 320 IGTLTLPLAKKVRIATGLEVQPAAVEQALLNAHCNGIDNVTFLVGAVEKLLPKM------ 373

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS- 336
                        + + +DPPR G D A +  ++      I+Y+SC   +L RDL +L  
Sbjct: 374 ---------GTIPEVVILDPPRKGCDRAVIDTLRQLKPSRIVYVSCKVATLARDLKLLCQ 424

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLV 363
              +TI R+   D FP T H+E    LV
Sbjct: 425 DGQYTITRVQPADFFPQTAHVEAAAFLV 452


>gi|325847814|ref|ZP_08170036.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480832|gb|EGC83885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 548

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 80/402 (19%), Positives = 154/402 (38%), Gaps = 55/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEP-IHYRMRAEFHI---WHDG 55
             +     YE +L  K + +++++      V  L I RS     YR + E+     + DG
Sbjct: 81  GCSYQKMGYETELLLKHNMMQKLLKNHHIDVKELSIVRSPKIKGYRNKMEYTFGDSYKDG 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104
             +  +    +  E +  +          ++   +    R +            LLR  +
Sbjct: 141 PLVLGLHRQNRFYEIVDTEGCNIVDEDFESIRKHVQNYFREKNTSFYHKKAHTGLLRNLI 200

Query: 105 FQIDYLTSQSDQAIVT------------LIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
            +    T +    +VT            L  H LL+        R+    H     +   
Sbjct: 201 IRKAMHTGEIMVILVTSSDKSFDPMRRDLFAHNLLNA---RTNGRIVSIYHVINDSLSDA 257

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211
            + +  ++   + Y++E +      L ++    SF QPN      + +  +  A      
Sbjct: 258 VKVDSMELLFGKKYIEENM----NDLKFQISPFSFFQPNVFTAEKIYQKAIELANVDKNK 313

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++L+LY G G  + + A+  ++ + +EI + +VE A  N   N + N+  +         
Sbjct: 314 NVLDLYSGTGTITQLFAKAANKAVGIEIVEEAVEKAFDNAKENQIENINFIAGDV----- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
                     L+ ID+   ++  + +DPPR G++   +  +        +YISCNP +  
Sbjct: 369 ----------LEKIDLVKGKYDIVVLDPPREGINPKAIKKIMDINPKEFVYISCNPKTQV 418

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           RD+ I     + +E+   FDQFP +RH+E   LL +     H
Sbjct: 419 RDIEIFMENGYKVEKYQAFDQFPRSRHVETVALLSKLDVDKH 460


>gi|330828386|ref|YP_004391338.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Aeromonas veronii
           B565]
 gi|328803522|gb|AEB48721.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Aeromonas veronii
           B565]
          Length = 440

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 142/373 (38%), Gaps = 30/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDD 57
             +        Q A K   L  +       + P L+ +   E   YR      I  D + 
Sbjct: 89  GCSAQHMSVADQQAAKAAGLVSLFERLGNIKAPALEPVLTGEDRAYRRVCRLAIKFDKNG 148

Query: 58  L--YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                    + + + + ID     +  ++AL+  +   +      R +L   + + ++  
Sbjct: 149 RCTRVGFRRRNSNDLVEIDSCPVLAEPLSALIAPLRECLNRLKSQR-ELGHAELIQAEQG 207

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             ++     R  +         L +   A+   + L    ++ +  L + +     + + 
Sbjct: 208 IMMLLRHTGRPNE----ADRALLVEFAKAQGIDLYLQAADDRIE-ALQQQFSP---SYSL 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L        F Q N  IN  M+E  L      + D +L+L+CG GNF+L LAR    V
Sbjct: 260 DGLSLAFAPGDFIQVNGPINQSMVEQALKWLGASKDDKVLDLFCGIGNFTLPLARQAREV 319

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V+ A  N   N + N +  +    +    M   RE             F  
Sbjct: 320 VGVEGELAMVQRAEENARRNGITNARFYKADLSDDIVGMSWARE------------GFDL 367

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DP R G  +    +V+  P  ++Y+SCNP +L RD  +L    + + RL + D FP+
Sbjct: 368 VLLDPARPGALEVMGHVVKLSPKRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPH 427

Query: 353 TRHMECGVLLVRK 365
           T H+E   L  R+
Sbjct: 428 TGHLESMALFERE 440


>gi|262170599|ref|ZP_06038277.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus MB-451]
 gi|261891675|gb|EEY37661.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus MB-451]
          Length = 440

 Score =  225 bits (573), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 152/373 (40%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDDL 58
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D  + 
Sbjct: 90  GCDLQHLDRAGQINHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKNQ 149

Query: 59  Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                   +Q+K  + + +       +NAL+ E+ A +  +      L  ++ +   + Q
Sbjct: 150 QLQFGFRRKQSKAIVSVTHCPVLEPSLNALLPELNALLS-QWSQPELLGHVELVKGDNTQ 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +    L D    +   + L   A + +       Y +E      
Sbjct: 209 VLVL----RHLGALAGQDQQSLTDFATQKGLTLYLTLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + N F Q N  +N  M+E  L       Q  +L+L+CG GNF+L L +    V
Sbjct: 260 -GSRLSFLPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLTKQAQEV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE  +  V+ A +N   N +NNV   + + ++             + +      +F  
Sbjct: 319 VGVEGVEEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTNASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|295097348|emb|CBK86438.1| 23S rRNA m(5)U-1939 methyltransferase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 432

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 132/335 (39%), Gaps = 27/335 (8%)

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ--QTKERMRIDYFMPGSLLINALMIEMM 91
            I    P  YR RA   + +        M  +   + + + +         + AL+ ++ 
Sbjct: 118 DIIADRPWGYRRRARLSLSYQPKTERLEMGFRKAGSSDIVSVTQCPVLVPHLEALLPDVH 177

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
             +     +R+ L  ++ + + S   +V     R      +    +L    H+ +  + L
Sbjct: 178 HCLASLDGVRS-LGHVELVLANSGPLMVL----RHTAPLSKADREKLERFSHSHELALFL 232

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQ 210
             ++   +         E    A   L        F Q N G+N  M+   LA       
Sbjct: 233 APQSEILEQVSG-----EAPWYASDGLRLTFSPRDFIQVNDGVNQQMVANALAWLDVQPT 287

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L+L+CG GNF+L LAR    V+ VE  +  V   + N   N + NV     + ++  
Sbjct: 288 DRVLDLFCGMGNFTLPLARKAASVVGVEGVEALVVKGQENAQQNGLQNVTFFHQNLED-- 345

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329
                      +         F  I +DP R+G       +++  P  ++Y+SCNP +L 
Sbjct: 346 ----------DVTQQPWAKQGFDKILLDPARAGAPGVMQHIIKLAPERVVYVSCNPATLA 395

Query: 330 RDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           RD  ++LS  + I RLA+ D FP+T H+E  VL  
Sbjct: 396 RDSEALLSGGYQIRRLAMLDMFPHTGHLESMVLFE 430


>gi|289523129|ref|ZP_06439983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503672|gb|EFD24836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 453

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 143/392 (36%), Gaps = 48/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEP----IHYRMRAEFHIWHDGD 56
              +    Y+ Q+  K   +   ++         I    P      YR +A     +   
Sbjct: 81  GCNMQHASYDHQVKVKSSLIEDAIIRIGKWKEADIAPVIPSFLVWGYRNKAIIQARYQKG 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDY 109
           +     F + T + + +        LI  +   +   +         E      +     
Sbjct: 141 ERKLGYFARGTHDVVNLKACPILDPLIYLVYANLRNAVLQSDLSFYDEETGEGLIRNFVL 200

Query: 110 LTSQSDQAIVT-LIYHRLLDDAWRECAIRLRDALHA------------RKYQIQLIGRAN 156
            +S S + I+   I+ R  DD   +    + + L+                        +
Sbjct: 201 RSSFSMKKILLAWIFSREPDDRECKMISDISNGLYEDVSPFLGGVQININPSKGNFIWGS 260

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           KT+    +D + ER       + +R   + F Q N      M E V    +  +  +LEL
Sbjct: 261 KTQSLFGKDVLVERF----ENIKFRFGVSDFFQVNVLQAFRMFETVAELARDSKH-VLEL 315

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G+ +  LA   + ++AVE  +P+ E+   N+  N +NNV  +   +++  +     
Sbjct: 316 YSGVGSMTAFLASFCNDIVAVEEWRPAYESLVSNMTNNGINNVTAICGKAEDVVKT---- 371

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLS 333
                       S  F  + VDPPR+G     +  +    +   ++Y+SCNP +L RD  
Sbjct: 372 ----------KVSGHFDIVVVDPPRTGCHKDVLNFIGRVISPKKVIYVSCNPATLARDSK 421

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           IL+   + +E     D FP T H+E  VLL +
Sbjct: 422 ILNEYGYNMENAMPLDMFPQTSHVESVVLLEK 453


>gi|157961009|ref|YP_001501043.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella pealeana
           ATCC 700345]
 gi|226725390|sp|A8H1S1|RUMA_SHEPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|157846009|gb|ABV86508.1| RNA methyltransferase, TrmA family [Shewanella pealeana ATCC
           700345]
          Length = 445

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 151/383 (39%), Gaps = 52/383 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI---FRSEPIHYRMRAEFHIWHDGDD 57
              L     E Q   K + L  ++  F Q    ++      +  HYR RA    W D + 
Sbjct: 91  GCDLQHLDIEAQRKHKANTLVDLVNKFAQTQASEVCAPLSGDAWHYRRRARLATWFDKNT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         + + + I      +  ++AL+ ++              F ++ L+ +  
Sbjct: 151 KHISLGFRASSSSDVVEIQSCAVLAEPLSALIPDLA-------------FMLNQLSGKKA 197

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLT 172
              V L       D      +R+   L + K + +L+  ANK ++ +   D D   E L 
Sbjct: 198 LGHVELTQ----ADNGNFVVLRVTKVL-SDKDKARLVEFANKHEVIVLLQDDDAQCEHLN 252

Query: 173 VAGRTLIY---------RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
            AG    Y              +F Q N  +N  M+   +       G+ +L+L+CG GN
Sbjct: 253 GAGEQPFYALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAGERVLDLFCGIGN 312

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           FSL LA+    V+ VE     VE AR N   + ++ V          +  + +E    ++
Sbjct: 313 FSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHAD---LSADLSKEPWLGKV 369

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHT 340
                       + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   IL   + 
Sbjct: 370 ----------DKMLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQ 419

Query: 341 IERLALFDQFPYTRHMECGVLLV 363
           ++++ L D FP T H+E   L  
Sbjct: 420 LKKIGLIDMFPQTHHLESMALFE 442


>gi|262166494|ref|ZP_06034231.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus VM223]
 gi|262026210|gb|EEY44878.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio mimicus VM223]
          Length = 440

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 151/373 (40%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRTAQINHKHQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + +         +NAL+ E+   +  +      L  ++ +   + Q
Sbjct: 150 QLQFGFRRKQSKAIVSVTRCPVLEPSLNALLPEL-NVLLSQWSQPELLGHVELVKGDNTQ 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAG 175
            +V     R L     +    L D    +   + L   A + +       Y +E      
Sbjct: 209 VLVL----RHLGALAEQDQQSLSDFATQKGLTLYLTLEAGELQHVQGEAPYCEET----- 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                  + N F Q N  +N  M+E  L       Q  +L+L+CG GNF+L LA+    V
Sbjct: 260 -GSRLSFLPNHFIQVNRAVNQQMVEQALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQEV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE  +  V+ A +N   N +NNV   + + ++             + +      +F  
Sbjct: 319 VGVEGVEEMVQHATHNAKLNQINNVAFYQANLEQ------------DMTNASWAQQKFAK 366

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           + +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+
Sbjct: 367 VLLDPARAGAEGIVDQLAALGAERVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPH 426

Query: 353 TRHMECGVLLVRK 365
           T H+E   L V+K
Sbjct: 427 TSHLESMALFVKK 439


>gi|259909468|ref|YP_002649824.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia pyrifoliae
           Ep1/96]
 gi|224965090|emb|CAX56622.1| 23S rRNA (Uracil-5-)-methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283479541|emb|CAY75457.1| putative SAM-dependent methyltransferase [Erwinia pyrifoliae DSM
           12163]
          Length = 438

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/361 (23%), Positives = 141/361 (39%), Gaps = 30/361 (8%)

Query: 13  QLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDG--DDLYHIMFDQQT 67
           Q   K   L  ++       V    I       YR RA   +        L+    ++ T
Sbjct: 100 QQQSKAKALGHLLSKQRGEAVAVDDIITGPTWGYRRRARLGLSFQPATQTLHMGFREKST 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            E + I +       +NAL+  + A +     +R +L  ++ + + +   +V     R L
Sbjct: 160 SELVNITHCPILKPELNALLQPLRAVLSGLQAVR-RLGHVELVQADNGPLLVL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D        +L    H     + L    +  +       V         TL +      F
Sbjct: 215 DALTTGDRQKLEQFSHKHHLSLYLAADGDSLEQASG---VMPHYRSGDLTLTF--SPRDF 269

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   L        D +L+LYCG GNF+L + +    V+ VE     V  
Sbjct: 270 IQVNDEVNQQMVARALTWLDLQPEDRVLDLYCGMGNFTLPMGKFAKNVVGVEGVAALVAK 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A YN   N++NNV   + + +E                    +  F  + +DP R+G   
Sbjct: 330 AGYNAELNNLNNVTFWQHNLEEDVSR------------QPWAAQGFNKVLLDPARAGAAG 377

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               + +  P  ++Y+SCNP +L RD   +L++ + +ER+ + D FP+T H+E  VL  R
Sbjct: 378 VMAHITKLAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMVLFSR 437

Query: 365 K 365
           K
Sbjct: 438 K 438


>gi|163750002|ref|ZP_02157246.1| RNA methyltransferase, TrmA family protein [Shewanella benthica
           KT99]
 gi|161330276|gb|EDQ01257.1| RNA methyltransferase, TrmA family protein [Shewanella benthica
           KT99]
          Length = 462

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 151/368 (41%), Gaps = 33/368 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYH--IMFD 64
           ++Q + K D L  +M        +        +   YR RA    ++D +  +       
Sbjct: 111 DKQRSHKQDALVSLMARLGQAEAETLAPALIGKEWGYRRRARLATFYDRNTKHTTLGFRA 170

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           + +K+ ++I +    +  ++ L++ +   +      +A L  I+ + + +   +V  +  
Sbjct: 171 KASKQVIKIAHCPVLATPLSDLILPLSKVLNQLSSKKA-LGHIELIEANNGHFVVIRMTK 229

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGR-ANKTKIC-----LDRDYVDERLTVAGRTL 178
            + D    +   +LR+   +    + + G  A+ T IC     LD D  +         +
Sbjct: 230 AMSD----KDTEKLREFALSHGVSLIVQGNDADLTLICDTPKMLDLDSDELPYYELDNGV 285

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
                  SF Q NA IN  M+   +   +      +L+L+CG GNFSL LA     V+ V
Sbjct: 286 KLSFTPGSFVQVNAEINNAMVNQAVDWLSVEANERVLDLFCGVGNFSLPLANKGAEVIGV 345

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E     V+ AR N   + ++ V        + +  +  +    ++            + +
Sbjct: 346 EGVPEMVQQARMNATLSGLDKVSFFH---TDLSADLSTQSWLGKV----------DKLLL 392

Query: 298 DPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355
           DP R+G  ++   + +  P  I+Y+SC+P SL RD   +L   + + +L L D FP T H
Sbjct: 393 DPARAGAFESLQWLKKMKPKSIVYVSCDPASLARDSECLLKHGYKLTKLGLIDMFPQTHH 452

Query: 356 MECGVLLV 363
           +E   L  
Sbjct: 453 IEAMALFE 460


>gi|293392822|ref|ZP_06637140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Serratia odorifera DSM
           4582]
 gi|291424681|gb|EFE97892.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Serratia odorifera DSM
           4582]
          Length = 449

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 129/348 (37%), Gaps = 27/348 (7%)

Query: 20  RLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFM 77
           R+ +     +VP   +       YR RA   +          M  +Q  + + + I +  
Sbjct: 113 RMIERETGVRVPPEPVIAGPQYGYRRRARLGLAWQPRRQSLTMGFRQAASNDLVPISHCP 172

Query: 78  PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137
             +  +  L+  + A +        +L   + + + +   +V     R LD         
Sbjct: 173 VLAPALERLLQPLHACLSSLQA-ANRLGHAELVLADNGPLLVL----RHLDALKPADRQA 227

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           L          + L   + + +         E        L        F Q N  +N  
Sbjct: 228 LLAFAEQHTLAVFLAANSERLEKLCG-----ETPYYQVDGLRLDFSPRDFIQVNDAVNQQ 282

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           M+   L   +    D +L+L+CG GNF+L LAR    V+ +E     V   +YN   N +
Sbjct: 283 MVAQALEWLELQPNDRVLDLFCGMGNFTLPLARRAKAVVGIEGVATLVANGQYNAHKNLL 342

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           NN      + ++  +                 +  F  + +DP R+G       +V+  P
Sbjct: 343 NNASFFHENLEDDVER------------QPWAAQGFDKVMLDPARAGAAGVMSHIVKLAP 390

Query: 317 -HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
             ++Y+SCNP +L RD   +L+  + + R+ + D FP+T H+E   L 
Sbjct: 391 ERVVYVSCNPSTLARDSKVLLAAGYRLARVRMLDMFPHTGHLESMALF 438


>gi|220905833|ref|YP_002481144.1| TrmA family RNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219862444|gb|ACL42783.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7425]
          Length = 457

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 136/362 (37%), Gaps = 41/362 (11%)

Query: 23  QMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGS 80
           + +  F+ P     +    P+ YR +  + +      +    + + +   + ++      
Sbjct: 111 ERIGKFKHPPVAPILAAPSPLAYRNKVTYPLRQVNHRVQAGYYRKGSHRLVNLNQCPVQD 170

Query: 81  LLINALMIEMMATIRLEP-----------LLRAKLFQIDYLTSQSDQAIVT----LIYHR 125
             +N L+ ++   ++              LLR    ++   T +    +VT    L   +
Sbjct: 171 DRLNPLLADVKQDLQQRGWPIYDEHTHRGLLRHLSLRVGRRTGEILLTLVTTDWQLPDFK 230

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
              + W +    L      R           +T+    R  + E+       L +     
Sbjct: 231 AQAEEWLQRYPALVGVCLNRNPDRTNAIFGCETRCIAGRPVLTEQFA----GLEFEIGSE 286

Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F Q        +++ +L          +++ YCG G  SL +AR   +V+ +EI   +V
Sbjct: 287 TFFQVYTEQAERLVQILLERLQLQGTERIVDAYCGIGTLSLPIARQAQQVIGLEIHPATV 346

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             A+ N   N + NV       ++            +L  +D+       + +DPPR G 
Sbjct: 347 AQAKQNAIRNGLTNVSFYAGPVEQ------------QLPQLDLL---PDIVVLDPPRKGC 391

Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGV 360
           D + V  +     P I+Y+SCNP +L RDL +L     + +E++   D FP T H+E   
Sbjct: 392 DRSVVEHLSQLRPPRIVYMSCNPATLARDLHLLCQANPYELEQIQPADFFPQTAHVETLA 451

Query: 361 LL 362
            L
Sbjct: 452 FL 453


>gi|304310588|ref|YP_003810186.1| 23S rRNA (Uracil-5-)-methyltransferase [gamma proteobacterium HdN1]
 gi|301796321|emb|CBL44529.1| 23S rRNA (Uracil-5-)-methyltransferase [gamma proteobacterium HdN1]
          Length = 444

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 133/371 (35%), Gaps = 24/371 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWHDGDD 57
             +L   + E Q+A K   L    +          L+      + YR RA     +    
Sbjct: 86  GCSLQHMRPEAQIAFKQRILESHFVRNGKLVPSQWLEPLTGPALGYRRRARLGAKYV-LK 144

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
              +M   + K    I        L+  +   +     L   L AK        +Q D A
Sbjct: 145 RETMMVGFREKRSSLIADLNQCETLVPEVGHAIQDLKILLGSLDAKGRIPQVQVAQGDDA 204

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--VAG 175
              L  H  +D         L        +Q         T   +     +ERL   +  
Sbjct: 205 TALLFRH--MDPLSEADQQALLGFCQQHGFQCYFQPGGENTVHRVWPSAGEERLCYRLPE 262

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +  +     FTQ N  IN  M+   +        + +L+L+CG GNF+L LAR  D V
Sbjct: 263 FNIEMKFHPMDFTQVNPYINEKMVSRAVELLAPEPSERVLDLFCGLGNFTLPLARRADVV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE +   V+  R N   N + NV+       +             L+        F  
Sbjct: 323 VGVEGSDALVQRGRENALHNGLQNVEFYGADLTK------------PLEHQAWAHDGFAK 370

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352
           I +DPPRSG  +    + V     I+Y+SC+P +L RD + L+   + +    + D FP+
Sbjct: 371 ILIDPPRSGALELVQKITVFKPKRIVYVSCDPATLARDAAELARQGYRLVVAGVMDMFPH 430

Query: 353 TRHMECGVLLV 363
           T H+E   +  
Sbjct: 431 TTHVESIAVFE 441


>gi|189424908|ref|YP_001952085.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ]
 gi|189421167|gb|ACD95565.1| RNA methyltransferase, TrmA family [Geobacter lovleyi SZ]
          Length = 437

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 90/380 (23%), Positives = 146/380 (38%), Gaps = 36/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSE--PIHYRMRAEFHIWHDGD 56
                   Y+ Q   K   L + +      Q P +    +      YR RA+F +     
Sbjct: 76  GCDWQHISYQAQCDAKQQILIETLQRVAHLQAPAVASTAASGLDYGYRARAQFKLHATPA 135

Query: 57  DLYHIMFDQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            L    F + ++  + +       +  IN  M+++   I+  P L     +I  L+ +  
Sbjct: 136 GLAVGFFRRGSRYVIDLPQGCPICTEPINTAMLKLRQVIQAVPDLH----RIPQLSLEEG 191

Query: 116 QAIVTLIYHRLLDDAWRECAIR--LRDALHARKYQIQLIGRANKTKICLDRDYVDER--- 170
            + V  + H +  D  R   +    RD L      +Q IGR    +      ++      
Sbjct: 192 ASGVVAVVHYIGSDQQRLKQLLLQHRDQLGVSGLFLQ-IGRKEALQPVFGSGHLTYPVPR 250

Query: 171 --LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVL 227
             L+    +L Y      F+Q N   N  M++ V   A       +L+LYCGNGN SL L
Sbjct: 251 CDLSADAMSLGYEI--GGFSQVNRLQNQKMVKLVCGYAQPAASQRMLDLYCGNGNLSLPL 308

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           +     +L +E   PS+ +A  N     VNN       + +             L+ +  
Sbjct: 309 SGAVQELLGIEGFAPSIASAVDNARQLRVNNSTFRCNDASK------------ELRHLIA 356

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST--THTIERL 344
               F  + +DPPR+G  D    + Q     I+Y+SC+P +L RDL+ L     + +   
Sbjct: 357 QHAVFDLVLLDPPRAGAADVARQLAQLGAQRIVYVSCDPATLARDLAALCGAAGYRLIEA 416

Query: 345 ALFDQFPYTRHMECGVLLVR 364
              D FP T H+E   LL R
Sbjct: 417 TPLDMFPQTGHLETVALLTR 436


>gi|319954120|ref|YP_004165387.1| 23S rRNA m(5)u-1939 methyltransferase [Cellulophaga algicola DSM
           14237]
 gi|319422780|gb|ADV49889.1| 23S rRNA m(5)U-1939 methyltransferase [Cellulophaga algicola DSM
           14237]
          Length = 472

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/390 (18%), Positives = 134/390 (34%), Gaps = 46/390 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMF 63
           Y+ QL  K   +   +              +   +   YR + EF         L  I  
Sbjct: 94  YDHQLFYKQKEVENNLRRIGHLELPEITPILGSKKQYFYRNKMEFSFSDSRWLSLDEIKS 153

Query: 64  DQQTKER--------------MRIDYFMPGSLLINALMIEMMATI------RLEPLLRAK 103
           D++ K+R              + I+         NA+ +E              P  +  
Sbjct: 154 DEEIKDRNALGFHIPGMWDKILDIEKCHLQEDPSNAIRLETKDFALKNDMSFFNPRNQHG 213

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           L +   + + S   I+ ++     D   RE  +            +  +    +     D
Sbjct: 214 LLRTMMIRTTSTGEIMVMVQFFENDKNKRELLLNHLQLKFPEITALLYVVNEKQNDTIYD 273

Query: 164 RDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELY 217
           ++ V     + +      L ++    SF Q N+      L  +     G+ G+  + +LY
Sbjct: 274 QEIVCFAGRDHIFEEMEGLKFKINAKSFYQTNSDQAYE-LYKITRDFAGLTGNELVYDLY 332

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G  +  +A+   +V+ +E    ++E A+ N   N + N        K          
Sbjct: 333 TGTGTIAQFVAKKAKKVVGIEAVPEAIEDAKANAIFNKIENTSFFAGDMKNIFN------ 386

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335
                ++    +     I  DPPR G+    V  + A     ++Y+SCN  +  RDL ++
Sbjct: 387 -----EEFIRENGTPDIIITDPPRDGMHKDVVAQILAIAPQKVVYVSCNSATQARDLELM 441

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + I +    D FP T H+E  VLL ++
Sbjct: 442 KDDYKITKTQAVDMFPQTHHVENVVLLEKR 471


>gi|238920899|ref|YP_002934414.1| 23S rRNA 5-methyluridine methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|259495630|sp|C5B8X6|RUMA_EDWI9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|238870468|gb|ACR70179.1| 23S rRNA (uracil-5-)-methyltransferase RumA, putative [Edwardsiella
           ictaluri 93-146]
          Length = 438

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 135/358 (37%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEF--HIWHDGDDLYHIMFDQQTK 68
           Q   K   L+++M      +   Q+   EP  YR RA F          +        + 
Sbjct: 100 QQQSKSQALQRLMARETGVDIAPQVIAGEPYGYRRRARFGLQFNVKTQRVVLGFRQAASN 159

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           + + +      +  + AL++ +   +      R +L  ++ + + +   +V     R LD
Sbjct: 160 DLVALKACPVLAPALEALLLPLGECLSALRA-RRRLGHLELVLADNGPLMVL----RHLD 214

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
                    L      R   + L       ++  +  Y                    F 
Sbjct: 215 PLSLSDREALSAFARQRGLTLYLSDGGAPQRLLGEAPY------YQIDGSRLDFNPQDFI 268

Query: 189 QPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q NA +N  M+   LA         +L+L+CG GNF+L LAR   RV+ VE     V  A
Sbjct: 269 QVNAAVNAQMVGQALAWLDVRADERVLDLFCGMGNFTLPLARLALRVVGVEGVPGLVATA 328

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + N   N ++NV+    + +E                    S  F  I +DP R+G    
Sbjct: 329 QNNARNNGLSNVEFFHQNLEEDVTRQA------------WASQGFDKILLDPARAGAPGV 376

Query: 308 TVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363
              +V+  P  ++Y+SCNP +L RD   +L   + + RL + D FP+T H+E   L  
Sbjct: 377 MQHIVRLAPRRVVYVSCNPTTLARDSQTLLQGGYRLTRLCMLDMFPHTGHLESMALFE 434


>gi|212697151|ref|ZP_03305279.1| hypothetical protein ANHYDRO_01717 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675926|gb|EEB35533.1| hypothetical protein ANHYDRO_01717 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 547

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 157/402 (39%), Gaps = 55/402 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEP-IHYRMRAEFHI---WHDG 55
             +     YE +L  K + +++++      +  L I RS     YR + E+     + DG
Sbjct: 81  GCSYQKMGYETELLLKHNMMQKLLKNHHIDIKELSIVRSPKIKGYRNKMEYTFGDAYKDG 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104
             +  +    +  E +  +          ++   +    R +            LLR  +
Sbjct: 141 PLVLGLHRQNRFYEIVDTEGCNIVDKDFESIRKHVQKYFREKNTSFYHKKAHTGLLRNLI 200

Query: 105 FQIDYLTSQSDQAIVT------------LIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
            +    T +    +VT            L  H LL+    +   R+    H     +   
Sbjct: 201 IRKAMHTGEIMVILVTSSEKSFDPMRRDLFAHNLLNA---KTDGRIVSIYHVINDSLSDA 257

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211
            + +  ++   + Y++E++      L ++    SF QPN      + +  +  A      
Sbjct: 258 VKVDSMELLFGKKYIEEKM----NDLKFQISPFSFFQPNVFTAEKIYQKAIELANVDKNK 313

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++L+LY G G  + + A+  ++ + +EI + +VE A  N   N + N+  +         
Sbjct: 314 NILDLYSGTGTITQLFAKSANKAMGIEIVEEAVEKAFDNAKENQIENIDFIAGDV----- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
                     L+ I++   ++  + +DPPR G++   +  +        +YISCNP +  
Sbjct: 369 ----------LEKINLVKGKYDIVVLDPPREGINPKAIKKIMDINPKEFVYISCNPKTQV 418

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           RD+ I     + +E+   FDQFP +RH+E   LL +  +  H
Sbjct: 419 RDIEIFMENGYIVEKYQAFDQFPRSRHVETVALLSKLNTEHH 460


>gi|139439227|ref|ZP_01772669.1| Hypothetical protein COLAER_01683 [Collinsella aerofaciens ATCC
           25986]
 gi|133775251|gb|EBA39071.1| Hypothetical protein COLAER_01683 [Collinsella aerofaciens ATCC
           25986]
          Length = 482

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/407 (19%), Positives = 141/407 (34%), Gaps = 60/407 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFR----------SEPIHYRMR 46
             T L   Y++QLA K   + ++  +         +                 P  +R +
Sbjct: 93  GCTALNRPYKKQLAAKQAAMEELFASLCEREDIAVDPIRGMGVTLGDPGKYPAPRGFRHK 152

Query: 47  A--EFHIWHDGDDLYHIMFDQQTKERMRIDYFM---PGSLLI--------NALMIEMMAT 93
           A   F    +G       F++ T + + +       PG+  I          L I     
Sbjct: 153 AATPFAPGKEGAVRC-GFFERGTHKIVAVPECPVEAPGARQILNGIAREAERLHIPAFNE 211

Query: 94  IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153
            +   LLR  + +  + T   DQ +VTL+  +      +E    +  AL+     +    
Sbjct: 212 DKHLGLLRYAVVRCGWRT---DQVMVTLVTAQRDLPHAQEFFEAV-AALNPHIVTVAQNI 267

Query: 154 RANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                   L  +    Y  E +        +     +F Q N      + +  +      
Sbjct: 268 NGRPGNAILGEETRIVYGAECMRDQLLGCEFDISPTAFYQTNPQQTELLYQLAIDGMDLQ 327

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           QGD+L + YCG+G   L  A+          +L VE     +  AR N   N +      
Sbjct: 328 QGDVLMDAYCGSGTIGLCAAKAAQDKGVGIMLLGVERNHAGIADARRNAELNGLTRSAWF 387

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HIL 319
           +   + ++              D   ++ R   + +DPPR+G     +    A     I 
Sbjct: 388 MADDATDYIL------------DAADNNERVDVLSIDPPRAGSTPEFLEAACALKPRRIT 435

Query: 320 YISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           YISCNP +  RDL  +L   + + ++   D FP+T H E   +L R+
Sbjct: 436 YISCNPVTQERDLHQLLDGGYRLLKITPVDMFPHTDHTETVAVLERR 482


>gi|261822786|ref|YP_003260892.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261606799|gb|ACX89285.1| RNA methyltransferase, TrmA family [Pectobacterium wasabiae WPP163]
          Length = 449

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 141/358 (39%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--T 67
           Q + K   L ++M      ++P   +    P  YR RA   ++    +   +M  +Q  +
Sbjct: 105 QQSSKTAALMRLMTRETGVELPAASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQPNS 164

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + I         + AL+  +   +     ++ +L  ++ + +++   +V     R L
Sbjct: 165 HDLVDIKACPVLRPELEALLQPLRECLSRLKAVK-RLGHVELVQAENGPLLVL----RHL 219

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D         LRD    +   + L   A+        + V          L        F
Sbjct: 220 DPLHPSDEQALRDFAQQQSVSVYLAPDADSLTCLHGEEPV-----YHVAGLTLAFSPRDF 274

Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   LA      Q  +L+L+CG GNF+L LA+    ++ VE     VE 
Sbjct: 275 IQVNDAVNQQMVAQALAWLDVQPQDKILDLFCGMGNFTLPLAQRAASIVGVEGVTALVEK 334

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            R N   N ++NV     + ++             +      +  F  I +DP R+G   
Sbjct: 335 GRENARRNALSNVTFFHQNLED------------DVTQQPWAAQGFDKILLDPARAGAAG 382

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
               + +  P  ++Y+SCN  +L RD   +L+  + +  +A+ D FP+T H+E   L 
Sbjct: 383 VMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLDMFPHTGHLESMALF 440


>gi|71276134|ref|ZP_00652414.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Dixon]
 gi|71900087|ref|ZP_00682230.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1]
 gi|71163052|gb|EAO12774.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Dixon]
 gi|71730169|gb|EAO32257.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1]
          Length = 468

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 136/373 (36%), Gaps = 27/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI-WHDGD 56
              L     + Q+  K   L + +      + +       +E   YR +  F + W +  
Sbjct: 112 GCVLQHLAEDAQVVSKQRVLLESLERIGRVSPERVLPALAAESWGYRRKGRFSVRWVEKK 171

Query: 57  DLYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
               + F ++    +  +         +    I ++AT+      R  + QI+++   + 
Sbjct: 172 GRTLVGFRERDPRFVADVSVCHTVVPHVGE-KIALLATLLDSLDGRRDVPQIEFIAGDA- 229

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V  +  R L        + L +        I L     ++   L  D V     +  
Sbjct: 230 ---VVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKP 286

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             + +      F Q N G+N  M+   L     G    +L+L+CG GNF+L LAR    V
Sbjct: 287 WDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEV 346

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE AR N   N + N +                      +D       F  
Sbjct: 347 VGVEGDIGLVERARENARRNGLGNAEFFVADLT------------RDQRDAPWMRQGFDK 394

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L       +  +   D FP
Sbjct: 395 LLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFP 454

Query: 352 YTRHMECGVLLVR 364
           +T H+E   +  R
Sbjct: 455 HTAHVESIAVFDR 467


>gi|325285147|ref|YP_004260937.1| RNA methyltransferase, TrmA family [Cellulophaga lytica DSM 7489]
 gi|324320601|gb|ADY28066.1| RNA methyltransferase, TrmA family [Cellulophaga lytica DSM 7489]
          Length = 470

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 132/399 (33%), Gaps = 48/399 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIW---- 52
                   YE QL  K   +   +              +   +   YR + EF       
Sbjct: 84  GCKWQHMGYEHQLFYKQKEVENNLTRIGHLQLPAITPILGSEKQYFYRNKMEFSFSDSRW 143

Query: 53  -----------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL- 100
                       +  +           + + I      +   NA+ +E         +  
Sbjct: 144 LTLDEVKSDKEIEDRNALGFHIPGMWDKILDIKKCHLQADPSNAIRLETKEFATKNNMTF 203

Query: 101 ------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                   +L  +   TS + + +V + +     +        L          + +I +
Sbjct: 204 FNPRHHTGELRTLMIRTSSTGEIMVLIQFFDDHKENREALLNHLATTFPEITALLYVINQ 263

Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
             +     D+D V     + +      L ++    SF Q N+      L  +      + 
Sbjct: 264 -KQNDTIYDQDIVCFAGRDHIFEEMEGLQFKINPKSFYQTNSEQAYE-LYKITRDFAELS 321

Query: 211 GD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           GD  + +LY G G  +  +++   +V+ +E    ++E A+ N   N ++N        K+
Sbjct: 322 GDELVYDLYTGTGTIAQFVSKKAKKVVGIEAVPEAIEDAKANAKHNKIDNTVFYAGDMKK 381

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326
                          +    +     I  DPPR G+    V  + A     ++Y+SCN  
Sbjct: 382 IFN-----------PEFIAQNGTPDVIITDPPREGMHKDVVEQILAIAPNKVVYVSCNSA 430

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  RDL +++  + I RL   D FP T H+E  VLL ++
Sbjct: 431 TQARDLELMNDMYEITRLQAVDMFPQTHHVENVVLLKKR 469


>gi|257783863|ref|YP_003179080.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469]
 gi|257472370|gb|ACV50489.1| RNA methyltransferase, TrmA family [Atopobium parvulum DSM 20469]
          Length = 415

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 142/415 (34%), Gaps = 69/415 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIW-HDG 55
               L   Y  QL  K  ++ +++                  EP+ YR +A        G
Sbjct: 16  GCEWLSVPYPIQLKRKQAQVEELLAPLASINNVTIEPIRGMDEPLAYRHKAATPFAPGKG 75

Query: 56  DDLYHIMFDQQTKERMRIDYFMP----GSLLIN-------ALMIEMMATIRLEPLLRAKL 104
             +    +   T + +     +        ++N          I      R +  LR  +
Sbjct: 76  RTVRSGFYASGTHQIIASKECLVEDGRARAILNDVAYLAGQFNIHAYQEDRGKGALRHAV 135

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  Y T   D  ++ L+ +       +E    LR A H     I L     +T   L R
Sbjct: 136 VRCGYAT---DDVMLVLVVNGQRLPHEQEFIAALRKA-HPELTSIFLNVNQKRTNAILGR 191

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--------- 211
           +    +    ++       +     SF Q N      + +  +                 
Sbjct: 192 ETRLLWGSTSMSDKLLNCTFEIGPTSFYQTNPQQTEALYQLAIDGALAGSKQTGATLTEA 251

Query: 212 -------------DLLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIA 252
                         +L+ YCG G   L LA   +       +  V+  + +++ AR N  
Sbjct: 252 STQTDASAPANNLRILDAYCGTGTIGLCLAHVAEAQGVNLLLTGVDQVENNIQMARRNAR 311

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N +   + +   +  + QA+ ++               F  I +DPPR+G   A +   
Sbjct: 312 NNKLE-AEFICDDATRYMQALAKD------------GQNFDVIILDPPRAGSTPAFLKAT 358

Query: 313 Q--AYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
              A   I+Y+SCN  +  RDL  +L +   IER+   D FP+T+H+EC V+L R
Sbjct: 359 AQLAQKKIVYVSCNVVTQARDLKVLLDSGFAIERVTPVDMFPHTKHVECVVVLSR 413


>gi|271501842|ref|YP_003334868.1| TrmA family RNA methyltransferase [Dickeya dadantii Ech586]
 gi|270345397|gb|ACZ78162.1| RNA methyltransferase, TrmA family [Dickeya dadantii Ech586]
          Length = 444

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/358 (22%), Positives = 139/358 (38%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQQT 67
           Q   K   L+ +M       VP  ++  +    YR RA   +++      L        +
Sbjct: 100 QHRSKSAALKHLMQRETGDTVPEPEVIGAAAYGYRRRARLALYYQAKTRQLQMGYRQAGS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + I         + AL++ +   +      R +L  ++ + ++    +V     R L
Sbjct: 160 HDLVDIRACPILHPALEALLVPLRDCLGQLRAQR-RLGHVELVLAEQGPLVVL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           +         L     A    +    +A+  + CL  D    R+      L        F
Sbjct: 215 EPLCDADRHALTAFAQACGASLFAAPQADTLE-CLHGDMPSYRIA----GLSLAFSPRDF 269

Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  IN  M+   L       Q  +L+L+CG GNF+L +A+H  RV+ VE     VE 
Sbjct: 270 IQVNDDINQRMVAQALTWLELQPQDRVLDLFCGMGNFTLPMAQHAGRVVGVEGVAALVEK 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            + N   N +  V     + +E             +      S  F  + +DP R+G   
Sbjct: 330 GQENAQRNGLTQVTFYHHNLEE------------DVTRQPWASMGFDKVLLDPARAGAPG 377

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
               +V+  P  ++YISCNP +L RD  +L +  + + RL + D FP+T H+E   L 
Sbjct: 378 VMPQIVKLAPRRVVYISCNPTTLARDSKVLMAAGYRLARLTMLDMFPHTGHLESMALF 435


>gi|297206333|ref|ZP_06923728.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii
           JV-V16]
 gi|297149459|gb|EFH29757.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus jensenii
           JV-V16]
          Length = 458

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 137/386 (35%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y++QL  K D + + +  +     Q       I   E  HYR +A++ +      
Sbjct: 87  LAHLSYDKQLEFKKDIVLESLRKYHPRGYQKYKVKNTIPAKENWHYRAKAQYQLEFSKGK 146

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               M+   ++  + +      S            LI+   + +    +    ++  + +
Sbjct: 147 TKLGMYAPNSRRLIDLPEMPTQSKNTQKTERLIKKLIDKYHLPVANWRKHFDGIKTIVVR 206

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
               T +     +T+           +  ++L + +                NKT     
Sbjct: 207 EAVSTGEMQVTFITIGKKINGLKKLAQEVMKLDNVVSVFQNETDWNNPQVWGNKTVKLAG 266

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           ++ + E +      L       +F Q N      +    +         +L + Y G G 
Sbjct: 267 KNQIIEHILDKKFAL----SPRAFFQLNPEQTEILYSEAIKLLNLTPDQVLIDAYSGVGT 322

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ + +  +V+ +E    +VE A +N+  NHV N + ++ S ++    ++        
Sbjct: 323 IGIIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNTEYLQGSVEKILPQLKN------- 375

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL  + +  +        +YISCNP +L +DL +LS  + 
Sbjct: 376 -----SGVPIDALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQDLVMLSEVYD 430

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 431 VRVIENVDMLPQTARCEAIAKLVLRK 456


>gi|332532630|ref|ZP_08408506.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037846|gb|EGI74295.1| 23S rRNA (uracil-5)-methyltransferase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 441

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 146/374 (39%), Gaps = 31/374 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDG-- 55
              L   +  QQ+ EK   + Q+   F     +       S+P+HYR  A   +  D   
Sbjct: 89  GCQLQHLEVSQQVVEKQTAVTQLFSKFAKLNSLNWQTPLLSKPVHYRRSARIAVMFDKAA 148

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +        +K  + I+       +   +       I     L +       L     
Sbjct: 149 KKMRVGYRASGSKNIVSINKCAVLDEVFTDVFTLFDDLINQHKALHS--ISHLQLCQSDK 206

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           Q  V + + + ++D  +     +  +                + + +   Y+ E      
Sbjct: 207 QNFVVIRHTKAINDDTKALVEHITKSQQFEIVWQSESDAIEHSHLAMPFYYLKE------ 260

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR 233
             L +     +F Q NA +N  ML+   A    ++GD  LL+L+CG GNFSLVLA+    
Sbjct: 261 FDLKFEFGLGNFIQVNAQVNEAMLKQA-ANWLDLKGDENLLDLFCGIGNFSLVLAKQAKS 319

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE    +V  A  N   N + N +         TQ+++    F++            
Sbjct: 320 VIGVEGVTSAVAMAAQNAQTNSITNAQFHCFD---LTQSIQSAPWFSK---------NLD 367

Query: 294 TIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351
            + +DP R+G       + ++ +  ILY+SC+P +L RD +I+S     + ++ L + FP
Sbjct: 368 VLVLDPSRTGAMAVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFDLNKIGLMNMFP 427

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   L  R+
Sbjct: 428 HTGHIETMALFQRR 441


>gi|95929630|ref|ZP_01312372.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
           684]
 gi|95134327|gb|EAT15984.1| RNA methyltransferase, TrmA family [Desulfuromonas acetoxidans DSM
           684]
          Length = 424

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 91/363 (25%), Positives = 143/363 (39%), Gaps = 27/363 (7%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHDGDDLYHIMF 63
            YEQQ   K        +     +  + R      +   YR R +F  ++         +
Sbjct: 81  SYEQQCRWKQQIFVDSCVRHGRIDQGVIRDLVPAPQEFGYRSRVQFKCYNSPQGFILGFY 140

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
            + +   + + +    +L I A M              + + QID     SD A+ T+++
Sbjct: 141 RRGSHNVIDVRHCPVIALPIAAQMTAWRTLFDGSVY-ASGVSQIDVAVG-SDDALRTIVH 198

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           +R            L   L A    + L+    K    L +  VD  + V    +     
Sbjct: 199 YR--GAETEAFCAWLAGCLDAVDGAV-LVQTGRKNPQILLQGQVDLAIRVDEPPMELHYG 255

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              F Q +   N  ++  V+ A +    D +L+LYCG GNFSL LAR    V+ VE   P
Sbjct: 256 PGGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLYCGMGNFSLPLARRAGAVVGVEDYAP 315

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           S+  A  N     + N      S + F    RR                   I +DPPRS
Sbjct: 316 SISYADRNRDTLGLTNATFHACSVETFLGRWRR---------------TADVIVLDPPRS 360

Query: 303 GLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           G  +A  GM++  P  I+Y+SC+  +L RDL+ L+ ++T+  +   D FP T H E   +
Sbjct: 361 GAREAVAGMMRCRPRRIVYVSCDQQTLMRDLTALAQSYTVTSIQALDMFPQTCHTEVLAV 420

Query: 362 LVR 364
           L R
Sbjct: 421 LDR 423


>gi|254490826|ref|ZP_05104009.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophaga thiooxidans
           DMS010]
 gi|224463998|gb|EEF80264.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophaga thiooxydans
           DMS010]
          Length = 445

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 139/374 (37%), Gaps = 29/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57
             +L+    E QL  K   L +    F                  YR +A   + +    
Sbjct: 87  GCSLMHMAPEAQLELKQGTLAEHFTHFGNLEPLTWLPPLTGPLWGYRRKARLGVKYVTKK 146

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQSD 115
              ++   + K    I       +L   + + +     +   L A  ++ QI+     S+
Sbjct: 147 E-QVLVGFREKASPFIAQLSQCDVLDPRVGLRLTELGEMIAGLDAYNRIAQIEVAMDDSN 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R LD         L      +   I        T   L  +    +L+ A 
Sbjct: 206 VALV----FRNLDPLSEGDKQALIAYGQEQDLWIYEQPGGPDTVAALWPE--KPQLSYAP 259

Query: 176 R-TLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDR 233
              L      + FTQ NAGIN  M++  L       +  +L+L+CG GNF+L LA+    
Sbjct: 260 EAGLTLNFDPSDFTQVNAGINEKMIQRALDLLDIQPEDRILDLFCGLGNFTLPLAKRVTE 319

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE     V+ A+ N   N + N +  +    +             LKD       F 
Sbjct: 320 VVGVEGDLALVKHAQNNALLNQLTNAEFEQADLTQ-----------TELKDYPWAQKGFN 368

Query: 294 TIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
            I +DPPRSG  +    +       ++Y+SCNP +L RD   L     +T+E   + D F
Sbjct: 369 KILLDPPRSGAFEVLHQLADLGAERLVYVSCNPATLARDAGELVNKHGYTMEAAGIMDMF 428

Query: 351 PYTRHMECGVLLVR 364
           P+T H+E   +  +
Sbjct: 429 PHTNHVESIAVFTK 442


>gi|78223042|ref|YP_384789.1| 23S rRNA methyltransferase/RumA [Geobacter metallireducens GS-15]
 gi|78194297|gb|ABB32064.1| 23S rRNA m(5)U-1939 methyltransferase [Geobacter metallireducens
           GS-15]
          Length = 440

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 144/378 (38%), Gaps = 30/378 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56
             T     Y+ QL  K   +   +  F     +     +    P  YR R +F +     
Sbjct: 76  GCTWQHLSYDDQLEAKERIVGDTLWRFGRIESERVARAVPSDSPYGYRSRVQFKVRWTAG 135

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL---RAKLFQIDYLTSQ 113
            L    + + +   + I     G  + N+ + +++A IR          ++ Q+D     
Sbjct: 136 KLQMGFYRRGSHYVVDI---PEGCAICNSALNQVLAEIRPVISCFAEPDRIPQVDVAVGD 192

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
               +  + Y     D  R      R  L A        GR    +     D +  R   
Sbjct: 193 DGVTLAVVHYIGDNRDRARAHFTACRSDLPAVGGLHLQCGRKESIEPLWGDDALTYRFPG 252

Query: 174 AGR----TLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNFSLVLA 228
                  ++        F+Q N   N  +L  V   A    +  LL+L+CGNGNF++ L+
Sbjct: 253 DFLPKLPSMTLSFSRGGFSQVNYRQNRELLRAVHRMADLTGEERLLDLFCGNGNFAIPLS 312

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R+   V+ +E   PS+E AR N AAN    ++ +R  +    + +    +          
Sbjct: 313 RYAMAVVGIEDYGPSLEDARRNAAANGAGKIEFIRSDAAAGVRQLVSREK---------- 362

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLAL 346
              +  + +DPPR+G  +A   +    P  ++Y+SC+P +L RDL +     + +     
Sbjct: 363 --HYSVVVLDPPRTGAKEAVTEVTSLRPERVVYVSCDPATLGRDLGLFRKSGYDVRECLP 420

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP T H+E   LL R
Sbjct: 421 VDMFPQTFHIESVTLLSR 438


>gi|113460243|ref|YP_718301.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus somnus
           129PT]
 gi|123327082|sp|Q0I127|RUMA_HAES1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|112822286|gb|ABI24375.1| 23S rRNA m(5)U-1939 methyltransferase [Haemophilus somnus 129PT]
          Length = 439

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/360 (23%), Positives = 151/360 (41%), Gaps = 30/360 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQQT 67
           Q   K   L Q +   Q   ++   +   E  HYR R    ++ D    +L      + +
Sbjct: 100 QRETKQKALFQRLTKLQKEAIEFMPMISGEAWHYRRRVRLSLYWDAKSKNLKIGFRQKNS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           ++ + I        L+N L+ ++   +      +  L  I+ + + +  A++  +  +L 
Sbjct: 160 QQIVNIRQCDVLDPLLNELLPKLHELLSTWSKPKT-LGHIELVAADNGVAMLLRVTEKLA 218

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           +         L D   A  +Q+ L  +  K    L  D    +L      L +      F
Sbjct: 219 E----HDRTLLLDF--AFNHQVMLFVQDEKEICHLQGDLPYYQLDDGSI-LHFDI--RDF 269

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N +M+   L      + D +L+L+CG GNF+L ++R+    + +E   P VE 
Sbjct: 270 IQVNRQLNQNMVNTALDWLDLKKKDNVLDLFCGMGNFTLPISRYVKSAVGIEGVLPMVEK 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR N   NH +NV+  +    +               + +     F  I +DPPRSG   
Sbjct: 330 ARRNGERNHCHNVQFYQCDLSQ------------SFTEQEWAKVPFDKILLDPPRSGAAF 377

Query: 307 ATVGMV-QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           A   +       I+Y+SCNP +L RD+ +L    + ++++A+ D FP+T H+E   L  R
Sbjct: 378 ALNALCYLMAEKIVYVSCNPATLVRDVELLLKFGYQLKKVAMIDMFPHTSHLESISLFER 437


>gi|260599136|ref|YP_003211707.1| 23S rRNA m(5)U1939 methyltransferase [Cronobacter turicensis z3032]
 gi|260218313|emb|CBA33301.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Cronobacter turicensis
           z3032]
          Length = 486

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 135/368 (36%), Gaps = 30/368 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
                    E Q   K   L +MM        ++       YR RA   +          
Sbjct: 143 GCQQQHASVELQQRSKAQALGRMMKR---EVDEVISGPAWGYRRRARLSLNFSPRKPGLQ 199

Query: 62  MFDQ--QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           M  +   + + + +         + AL+ ++   +     +R  L  ++ +   S   +V
Sbjct: 200 MGFRKAGSNDLVDVHRCPVLVPRLEALLPKLRECLSSLNGVRH-LGHVELVDVTSGPLMV 258

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
                R L         +L    H+    + L   ++  +         E        L 
Sbjct: 259 L----RHLKPLNACDREKLECFSHSEGVALYLAPESDTLENLNG-----EMPWYEFDGLR 309

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q N  +N  M+   L       G+ +L+L+CG GNF+L LAR  + V+ VE
Sbjct: 310 LTFSPRDFIQVNDAVNQQMVARALEWLDIQPGERVLDLFCGMGNFTLPLARRAESVVGVE 369

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE   YN   N + NV   + + +E             +         F  + +D
Sbjct: 370 GVAALVEKGSYNAGLNTLKNVTFFQHNLEE------------DVTRQPWAQQGFDKVLLD 417

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +V+  P  ++Y+SCNP +L RD  ++L+  +   RLA+ D FP+T H+
Sbjct: 418 PARAGAAGVMQHIVKLKPRRVVYVSCNPSTLMRDSEALLAAGYRTGRLAMLDMFPHTSHL 477

Query: 357 ECGVLLVR 364
           E   L  R
Sbjct: 478 ESMALFER 485


>gi|70731793|ref|YP_261535.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
           Pf-5]
 gi|91207808|sp|Q4K898|RUMA_PSEF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|68346092|gb|AAY93698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas
           fluorescens Pf-5]
          Length = 450

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 146/371 (39%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--G 55
             ++    +++QLA K   L + +        +            YR RA   +  D  G
Sbjct: 99  GCSVQHLPHDEQLALKQRMLAEQLSKVAGVEPEAWAAPLSGPEFGYRRRARVAVRWDAKG 158

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L        +++ + ID        +  +M  + A +R     +A L  ++  +  + 
Sbjct: 159 KQLEVGFRAAGSQDIVAIDDCPVLVQALQPVMNRLPAMLRRLSKPQA-LGHVELFSGSA- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L +   L D+       L+D     + Q+ L G          +  +  RL    
Sbjct: 217 -LAVLLRHMAPLSDS---DLTILKDFCDFHQAQLWLHGEGEPQPFDPSQ-ALGYRLETWD 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L YR     F Q NAG+N  M+   L        + +L+L+CG GNF+L LAR    V
Sbjct: 272 LHLAYR--PGDFVQVNAGVNEAMVAQALEWLAPQADERVLDLFCGLGNFALPLARQVREV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     V  A  N A+N+++N +  +    +             L   +     F  
Sbjct: 330 VAVEGVATMVARAAENAASNNLHNTRFFQADLSQ------------PLSAAEWADEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    +       ++Y+SCNP +L RD + ++   + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQLATLGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|87124488|ref|ZP_01080337.1| hypothetical protein RS9917_12780 [Synechococcus sp. RS9917]
 gi|86168060|gb|EAQ69318.1| hypothetical protein RS9917_12780 [Synechococcus sp. RS9917]
          Length = 461

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 154/398 (38%), Gaps = 54/398 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV------PNLQIFRSEPIHYRMRAEFHIWHDG 55
             TL       Q A K DRL Q +           P        P+ YR RA   +  D 
Sbjct: 86  GCTLQHWDNAHQSAWKRDRLVQTLSRIGGLHHPVDPLEPSEMGPPLGYRNRALLPLQRDS 145

Query: 56  DDL-YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-LRAKLFQID----- 108
           +       + + + + + +++       ++ L+  + A ++       A L Q D     
Sbjct: 146 EGQLRLGYYKRGSHQLVNLNHCPVLDPGLDELLAPLKADLQATGWPADADLHQGDGLRHL 205

Query: 109 --YLTSQSDQAIVTLI--------YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
              L ++S + ++TLI         HR L   W +   +++      + +        +T
Sbjct: 206 GLRLATRSREVLITLISSTAELPGVHR-LAQGWCDRWPQVKGVTLNLQPRRTNTVLGPQT 264

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLL 214
                   V+E       TL       +F Q N       +    +W+L+    I   ++
Sbjct: 265 LTLAGAGTVEETFCGLQLTL----ASTTFFQVNTTEAERAVLSLSQWLLSQAGPIA--VI 318

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG G  +L LA     VL +E+ + SVE AR N   N +  V  +    +       
Sbjct: 319 DAYCGIGTIALPLAAAGHSVLGLEVHQASVEQARRNAEHNGLTGVCFLAGDVQH------ 372

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL 332
                     +     + + + VDPPR GLD +    + A P   + Y+SC+P +L RDL
Sbjct: 373 ---------HLAEALPQHQALVVDPPRKGLDPSVTEQILACPPRWLAYLSCDPATLARDL 423

Query: 333 SILST---THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           + L+     + I RL  FD FP T H+EC  LL R  S
Sbjct: 424 ARLAGPEAPYRIHRLQPFDFFPQTSHLECLALLERVSS 461


>gi|170718282|ref|YP_001785299.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus somnus
           2336]
 gi|168826411|gb|ACA31782.1| RNA methyltransferase, TrmA family [Haemophilus somnus 2336]
          Length = 439

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 85/360 (23%), Positives = 150/360 (41%), Gaps = 30/360 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQQT 67
           Q   K   L Q +   Q   ++   +   E  HYR R    ++ D     L      + +
Sbjct: 100 QRETKQKALFQRLTKLQKEAIEFMPMISGEAWHYRRRVRLSLYWDAKSKKLKIGFRQKNS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           ++ + I        L+N L+ ++   +      +  L  I+ + + +  A++  +  +L 
Sbjct: 160 QQIVNIRQCDVLDPLLNELLPKLHELLSTCSKPKT-LGHIELVAADNGVAMLLRVTEKLA 218

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           +         L D   A  +Q+ L  +  K    L  D    +L      L +      F
Sbjct: 219 E----HDRTLLLDF--AFNHQVMLFVQDEKEICHLQGDLPYYQLDDGSI-LHFDI--RDF 269

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N +M+   L      + D +L+L+CG GNF+L ++R+    + +E   P VE 
Sbjct: 270 IQVNRQLNQNMVNTALDWLDLKKKDNVLDLFCGMGNFTLPISRYVKSAVGIEGVLPMVEK 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR N   NH +NV+  +    +               + +     F  I +DPPRSG   
Sbjct: 330 ARRNGERNHCHNVQFYQCDLSQ------------SFTEQEWAKVPFDKILLDPPRSGAAF 377

Query: 307 ATVGMV-QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           A   +       I+Y+SCNP +L RD+ +L    + ++++A+ D FP+T H+E   L  R
Sbjct: 378 ALNALCYLMAEKIVYVSCNPATLVRDVELLLKFGYQLKKVAMIDMFPHTSHLESISLFER 437


>gi|285019297|ref|YP_003377008.1| 23s rrna (uracil-5-)-methyltransferase [Xanthomonas albilineans GPE
           PC73]
 gi|283474515|emb|CBA17016.1| probable 23s rrna (uracil-5-)-methyltransferase protein
           [Xanthomonas albilineans]
          Length = 467

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 150/373 (40%), Gaps = 27/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L     +QQ+  K   L   +        Q+           YR +  F +      
Sbjct: 112 GCVLQHLAEDQQILAKQQVLTDNLERIGHVTPQVVLPALSGASWGYRRKGRFSVRRVEKK 171

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK--LFQIDYLTSQSD 115
              ++   + ++   +        +I  + +++ A   L   L AK  + QI+++   + 
Sbjct: 172 DKTLV-GFREQDPRFVADLSVCHTVIPQVGLKVAALAELVERLDAKRDIPQIEFIAGDAT 230

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+ T  + + L +  ++  I    A H     +Q  G  +   +      +  RL    
Sbjct: 231 VAL-TFRHMQPLSEHDQDALIAFAQA-HDFAIFLQPAGVDSVHPLYPQAAPLSFRLPQWD 288

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   LA      GD +L+L+CG GNF+L LAR    V
Sbjct: 289 VELAFR--PLDFIQVNAVLNQQMIAHALALLDAQSGDRVLDLFCGLGNFTLPLARTVREV 346

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  AR N   N ++N +     + + TQ  R+     +          F  
Sbjct: 347 VGVEGDAGLVTRARENAQRNGLDNAQFF---AADLTQDQRQAPWMRQ---------GFDK 394

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD S L  +    ++     D FP
Sbjct: 395 LLLDPPRSGALEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGFVLKAAGAMDMFP 454

Query: 352 YTRHMECGVLLVR 364
           +T H+E   +  R
Sbjct: 455 HTAHVESIAVFER 467


>gi|325849101|ref|ZP_08170593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480346|gb|EGC83409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 508

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 157/375 (41%), Gaps = 36/375 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
             +++   Y+ Q+  K + ++  +      Q+ ++++ +S+  +YR +    I  DG   
Sbjct: 76  GCSIMDINYKSQIKLKENLIKNALLKSAKIQLEDIEVLQSKEFYYRNKIRLQITKDGKLA 135

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           Y+  +   + + + I   +  + LI   + ++      + + +     ++ +T +++   
Sbjct: 136 YNKKY---SNDLIEIKDCLLANDLIRENLGKI--ENISKEISKNYPNSLEEITIRANDEE 190

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           + L      +        + +++     + I LI +  K  I   +DY+   L       
Sbjct: 191 ILLNIKIKDEKIIPYIKKQYKNS----SFNINLINKKEKLNIS-GKDYLIYNLLDK---- 241

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
            ++   N F Q N  +   + +       G    +L+L+CG+   S+ +  + D V+ +E
Sbjct: 242 KFKISMNDFYQVNDYMTEKLYKTA-KNFLGEDQKVLDLFCGSATSSIAI--NDDHVVGIE 298

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I K +++ A+ N   N + + K +  ++             N +    I   +   I VD
Sbjct: 299 INKNAIKDAKENAKINGLKDYKFIAKNA-------------NYIDHKFIKKEKIDAIVVD 345

Query: 299 PPRSGLDDATVGMVQAYPHI--LYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRH 355
           PPR+GLD   +  +        +YISCNP +L RD++      + +E++   D F  T H
Sbjct: 346 PPRAGLDKEIIKTIAKTKIKKIVYISCNPQTLARDINRFQNKGYKLEKIKGCDMFSQTMH 405

Query: 356 MECGVLLVRKPSGWH 370
           +E   LL +     H
Sbjct: 406 VETVALLSKLDIDKH 420


>gi|190575407|ref|YP_001973252.1| 23S rRNA 5-methyluridine methyltransferase [Stenotrophomonas
           maltophilia K279a]
 gi|226725396|sp|B2FPX2|RUMA_STRMK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|190013329|emb|CAQ46963.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 444

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 140/377 (37%), Gaps = 33/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWH--DG 55
              L     +QQ+  K   L   +                 E   YR +  F +      
Sbjct: 88  GCVLQHLDEDQQIVAKQRVLMDNLERIGHVKPGKVLAPLVGESWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +Q  +    +   +     I    +E ++T       +  + QI+++    D
Sbjct: 148 DKTLVGFREQDPRFVADLSQCLTVIPEI-GTKVEALSTFIESLDGKRDIPQIEFIAG--D 204

Query: 116 QAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--ERLT 172
           QA+V  + H + L DA R              + I L      T   LD   V    RL 
Sbjct: 205 QAVVLTVRHLQPLSDADRAAWAAFGQ---QHGFVIYLQSGGVDTVQPLDGQGVPLSFRLA 261

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
                L +R     F Q NA +N  M+   L     G    +L+L+CG GNF+L LAR  
Sbjct: 262 PWDVELAFR--PLDFIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRV 319

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE     V  AR N   N + N +     S + TQ  R      +          
Sbjct: 320 REVVGVEGDAGLVARARENAVRNGLANAQFF---SADLTQDQRSTPWMRQ---------G 367

Query: 292 FKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348
           F  + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D
Sbjct: 368 FDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMD 427

Query: 349 QFPYTRHMECGVLLVRK 365
            FP+T H+E   +  ++
Sbjct: 428 MFPHTAHVESIAVFEKR 444


>gi|293569131|ref|ZP_06680438.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071]
 gi|291588178|gb|EFF20019.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071]
          Length = 245

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 112/259 (43%), Gaps = 27/259 (10%)

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKICLDRDYVDE 169
            +V L+  +      +E A  + + L      IQ I          +K K+   RDY+++
Sbjct: 1   MMVVLVTRKEKFFKSKEIAEAIHEELPEVVSVIQNINEEKTNVILGDKEKVLYGRDYIED 60

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           +L        YR    SF Q N     ++ +  +   +  + D +++ Y G G   L LA
Sbjct: 61  QLLGK----TYRISAKSFYQVNTQQAEYLYQTAIEFAELDKKDIVIDAYSGIGTIGLSLA 116

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
              D+V  +E+   ++E A++N   N + NV      +++  +  +              
Sbjct: 117 DRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYEVGKAEKVMKKWQE------------K 164

Query: 289 SYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILST-THTIERLA 345
             +   I VDPPR GLD   +   ++  P  I+YISCNP +  RD  +L+   + ++++ 
Sbjct: 165 GVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDAKLLAEAGYVVKKVQ 224

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+E     V+
Sbjct: 225 PVDLFPQTHHIELVASFVK 243


>gi|256851520|ref|ZP_05556909.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           27-2-CHN]
 gi|260660943|ref|ZP_05861858.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           115-3-CHN]
 gi|282932756|ref|ZP_06338162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
 gi|256616582|gb|EEU21770.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           27-2-CHN]
 gi|260548665|gb|EEX24640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           115-3-CHN]
 gi|281303112|gb|EFA95308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
          Length = 458

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 137/386 (35%), Gaps = 40/386 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y++QL  K D + + +  +     Q       I   E  HYR +A++ +      
Sbjct: 87  LAHLSYDKQLEFKKDIVLESLRKYHPRGYQKYKVKNTIPAKENWHYRAKAQYQLEFSKGK 146

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               M+   ++  + +      S            LI+   + +    +    ++  + +
Sbjct: 147 TKLGMYTPNSRRLIDLPEMPTQSKNTQKTERLIKKLIDKYHLPVANWRKHFDGIKTIVVR 206

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
               T +     +T+           +  ++L + +                NKT     
Sbjct: 207 EAVSTGEMQVTFITIGKKINGLKKLAQEVMKLDNVVSVFQNETDWNNPQVWGNKTVKLAG 266

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           ++ + E +      L       +F Q N      +    +         +L + Y G G 
Sbjct: 267 KNQIIEHILDKKFAL----SPRAFFQLNPEQTEILYSEAIKLLNLTPDQVLIDAYSGVGT 322

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             ++ + +  +V+ +E    +VE A +N+  NHV N + ++ S ++    ++        
Sbjct: 323 IGIIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNTEYLQGSVEKILPQLKN------- 375

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL  + +  +        +YISCNP +L +DL +LS  + 
Sbjct: 376 -----SGVPIDALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQDLVMLSEVYD 430

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  +   D  P T   E    LV + 
Sbjct: 431 VRVIENVDMLPQTARCEAIAKLVLRK 456


>gi|238750559|ref|ZP_04612059.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia rohdei ATCC
           43380]
 gi|238711207|gb|EEQ03425.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia rohdei ATCC
           43380]
          Length = 433

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 74/365 (20%), Positives = 140/365 (38%), Gaps = 32/365 (8%)

Query: 12  QQLAE--KVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            QL +  K D L+++M            +       YR RA   +++        M   Q
Sbjct: 87  SQLQQGSKADSLQRLMVRETGGCPTLAPVICGPEYGYRRRARLGLFYQPKQHRLQMGFHQ 146

Query: 67  T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           T   + + I         +  L+  +   +     +R +L  ++ + + +   +V     
Sbjct: 147 TESHDLVSITRCPVLRPELERLLQPLYQCLSTLQAVR-RLGHVELVLADNGPLLVL---- 201

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD         L +     +  + L G ++  +         E        L      
Sbjct: 202 RHLDTLKEVDRAALIEFATREQVAVYLAGDSDNLEKLFG-----EEPYYQIEGLRLAFHP 256

Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   +          +L+L+CG GNF+L LA+    V+ VE     
Sbjct: 257 RDFIQVNDAVNQQMVAQAIEWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAAL 316

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   +YN  +N + NV     + +            + +      +  F  + +DP R+G
Sbjct: 317 VANGQYNARSNTLPNVSFFHENLE------------SDISCQPWAAQGFDKVLLDPARAG 364

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
                  +V+  P  ++Y+SCNP +L RD   +L+  + + ++ + D FP+T H+E   L
Sbjct: 365 ASGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 424

Query: 362 LVRKP 366
            +++P
Sbjct: 425 FMQEP 429


>gi|238854930|ref|ZP_04645260.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3]
 gi|260664217|ref|ZP_05865070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           SJ-7A-US]
 gi|282931642|ref|ZP_06337135.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
 gi|238832720|gb|EEQ25027.1| 23S rRNA-methyltransferase RumA [Lactobacillus jensenii 269-3]
 gi|260562103|gb|EEX28072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           SJ-7A-US]
 gi|281304253|gb|EFA96362.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus jensenii
           208-1]
          Length = 458

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 139/388 (35%), Gaps = 41/388 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y++QL  K D + + +  +     Q       I   E  HYR +A++ +      
Sbjct: 87  LAHLSYDKQLEFKKDIVLESLRKYHPRGYQKYKVKNTIPAKENWHYRAKAQYQLEFSKGK 146

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               M+   ++  + +      S            LI+   + +    +    ++  + +
Sbjct: 147 TKLGMYAPNSRRLIDLPEMPTQSKNTQKTERLIKKLIDKYHMPVANWRKHFDGIKTVVVR 206

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLD 163
               T +     +T+           +  ++L + +                NKT     
Sbjct: 207 EAASTGEMQVTFITIGKKINGLKKLAQEVMKLDNVVSVFQNETDWNNPQIWGNKTIKLAG 266

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
           ++ + E +      L       +F Q N      +    +         +L + Y G G 
Sbjct: 267 KNQIVEHILDKKFAL----SPRAFFQLNPEQTEILYSEAIKLLNLAPDQVLIDAYSGVGT 322

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L+ + +  +V+ +E    +VE A +N+  NHV N + ++ S ++    ++        
Sbjct: 323 IGLIASDYVKQVIGIESIPEAVEDAMHNVKLNHVRNAEYLQGSVEKILPQLKN------- 375

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL  + +  +        +YISCNP +L +DL +LS  + 
Sbjct: 376 -----SGVPIDALIVDPPRTGLAKSLIKTIMQVKPESFVYISCNPSTLAQDLVMLSEVYD 430

Query: 341 IERLALFDQFPYTRHMECGVLLV-RKPS 367
           +  +   D  P T   E    LV RK +
Sbjct: 431 VRVIENVDMLPQTARCEAIAKLVLRKDN 458


>gi|21230734|ref|NP_636651.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66769270|ref|YP_244032.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|23822130|sp|Q8PB48|RUMA_XANCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|81304771|sp|Q4USG1|RUMA_XANC8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|21112328|gb|AAM40575.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574602|gb|AAY50012.1| RNA methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 444

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 136/376 (36%), Gaps = 31/376 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 88  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   + ++ A +      +  + QI+++     
Sbjct: 148 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMD-GKRDIPQIEFIAGDDA 206

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173
            A+      R L          L +   A  + I L      +   L      +  RL  
Sbjct: 207 VALTI----RHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVPLSFRLPK 262

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR   
Sbjct: 263 WDVELAFR--PLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVR 320

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE     V  AR N   N ++N +     + + TQ  R+     +          F
Sbjct: 321 EVVGVEGDAGLVARARENAQRNGLDNAQFY---AADLTQDQRQTAWMRQ---------GF 368

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
             + +DPPRSG  D    + ++ +  I+Y+SC+P SL RD   L      ++      D 
Sbjct: 369 DKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDM 428

Query: 350 FPYTRHMECGVLLVRK 365
           FP+T H+E   +  ++
Sbjct: 429 FPHTAHVESIAVFEKR 444


>gi|317491024|ref|ZP_07949460.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920571|gb|EFV41894.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 438

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 145/371 (39%), Gaps = 32/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
                      Q   K   L+++++     N+    +       YR RA   +       
Sbjct: 89  GCQQQHASVPLQQQSKSASLQRLIIRETEVNIIPESVISGPEYGYRRRARLGLQFLSKQQ 148

Query: 59  YHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
             +M  +Q  + + + +         + +L+  + A +     +R +L   + + + +  
Sbjct: 149 QLVMGFRQAGSNDLVPVKECPILVPALASLLQPLQACLAGMKAVR-RLGHAELVQADNGC 207

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-ANKTKICLDRDYVDERLTVAG 175
            +V     R L+    +   RL D        + L G      K+C +  +         
Sbjct: 208 VLVL----RHLEALKEQDLARLHDFGAQHDVMVYLQGNEGELVKLCGESPF------YQV 257

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L        F Q N  IN  M+   L        D +L+L+CG GNF+L LA+   +V
Sbjct: 258 DELRLFFSPRDFIQVNDAINQQMVAQALEWLDVQSTDRVLDLFCGMGNFTLPLAKRAKQV 317

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE   YN   N +NNV+  + + ++             +         F+ 
Sbjct: 318 VGVEGVATLVENGLYNAHINALNNVEFFQHNLED------------DVTRQPWAKLGFEK 365

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DP R+G       +V+  P  ++Y+SCNP +L RD  +L +  + +ER+ + D FP+
Sbjct: 366 VLLDPARAGAAGVMTHIVKLAPEKVVYVSCNPTTLARDSKVLIAAGYRMERVRMLDMFPH 425

Query: 353 TRHMECGVLLV 363
           T H+E   L V
Sbjct: 426 TGHLESMALFV 436


>gi|188992421|ref|YP_001904431.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167734181|emb|CAP52389.1| RNA methyltransferase [Xanthomonas campestris pv. campestris]
          Length = 470

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 136/376 (36%), Gaps = 31/376 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 114 GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRKGRFSVRRVEKK 173

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   + ++ A +      +  + QI+++     
Sbjct: 174 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMD-GKRDIPQIEFIAGDDA 232

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173
            A+      R L          L +   A  + I L      +   L      +  RL  
Sbjct: 233 VALTI----RHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVPLSFRLPK 288

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR   
Sbjct: 289 WDVELAFR--PLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVR 346

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE     V  AR N   N ++N +     + + TQ  R+     +          F
Sbjct: 347 EVVGVEGDAGLVARARENAQRNGLDNAQFY---AADLTQDQRQTAWMRQ---------GF 394

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
             + +DPPRSG  D    + ++ +  I+Y+SC+P SL RD   L      ++      D 
Sbjct: 395 DKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDM 454

Query: 350 FPYTRHMECGVLLVRK 365
           FP+T H+E   +  ++
Sbjct: 455 FPHTAHVESIAVFEKR 470


>gi|319776825|ref|YP_004136476.1| tRNA (uracil-5-)-methyltransferase related enzyme [Mycoplasma
           fermentans M64]
 gi|318037900|gb|ADV34099.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Mycoplasma
           fermentans M64]
          Length = 438

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 151/377 (40%), Gaps = 33/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S  L I  Y  QL  K + ++ +      F      +   +  +YR +    +      +
Sbjct: 82  STPLAILNYADQLEFKENVVKYLFQRNIHFNETQKILPCEKQWNYRNKITVFVESSKGKI 141

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK---LFQIDYLTSQS- 114
              ++++ T + +  D +   +  IN L++ +   I            L QI    S+S 
Sbjct: 142 KFGLYEKNTHKLVEQDSYDLANESINKLLMYLNKNINNYKCFIENGQFLKQIVVRYSESY 201

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD-ERLTV 173
           DQ ++  +  +       E +  L   L +    +++I +  K K      Y + + +  
Sbjct: 202 DQMMLAFVQDKPF-----ELSEDLLKDLTSNFKNLKVILKEEKVKKTTYTYYSEAKNIQD 256

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFD 232
               L +    NSF Q N+    ++   ++         ++++ Y G G  SL +A    
Sbjct: 257 KISNLTFNIDYNSFFQVNSYQTNNLYNLLVNNLHLDKTMNVVDAYSGIGTISLKIAEKVK 316

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V  +EI K +V  A+ N   N++NN +                     LK ID    + 
Sbjct: 317 KVYGLEIVKEAVINAKQNAKLNNINNTEFYEGDV---------------LKTIDNIKEKI 361

Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI--LSTTHTIERLALFD 348
            TI +DPPR+G+    +  +       I YISCNP +LCRD+ +  LS  + +E L   D
Sbjct: 362 DTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLCRDIDLLTLSKKYKLEFLKPCD 421

Query: 349 QFPYTRHMECGVLLVRK 365
            F  T H+E   +L  K
Sbjct: 422 MFCQTHHVETVAILKLK 438


>gi|238809600|dbj|BAH69390.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 441

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 151/377 (40%), Gaps = 33/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S  L I  Y  QL  K + ++ +      F      +   +  +YR +    +      +
Sbjct: 85  STPLAILNYADQLEFKENVVKYLFQRNIHFNETQKILPCEKQWNYRNKITVFVESSKGKI 144

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK---LFQIDYLTSQS- 114
              ++++ T + +  D +   +  IN L++ +   I            L QI    S+S 
Sbjct: 145 KFGLYEKNTHKLVEQDSYDLANESINKLLMYLNKNINNYKCFIENGQFLKQIVVRYSESY 204

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD-ERLTV 173
           DQ ++  +  +       E +  L   L +    +++I +  K K      Y + + +  
Sbjct: 205 DQMMLAFVQDKPF-----ELSEDLLKDLTSNFKNLKVILKEEKVKKTTYTYYSEAKNIQD 259

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFD 232
               L +    NSF Q N+    ++   ++         ++++ Y G G  SL +A    
Sbjct: 260 KISNLTFNIDYNSFFQVNSYQTNNLYNLLVNNLHLDKTMNVVDAYSGIGTISLKIAEKVK 319

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V  +EI K +V  A+ N   N++NN +                     LK ID    + 
Sbjct: 320 KVYGLEIVKEAVINAKQNAKLNNINNTEFYEGDV---------------LKTIDNIKEKI 364

Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI--LSTTHTIERLALFD 348
            TI +DPPR+G+    +  +       I YISCNP +LCRD+ +  LS  + +E L   D
Sbjct: 365 DTIIIDPPRAGVSKEVLEKILKIEPKQIGYISCNPHTLCRDIDLLTLSKKYKLEFLKPCD 424

Query: 349 QFPYTRHMECGVLLVRK 365
            F  T H+E   +L  K
Sbjct: 425 MFCQTHHVETVAILKLK 441


>gi|189501475|ref|YP_001957192.1| TrmA family RNA methyltransferase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189496916|gb|ACE05463.1| RNA methyltransferase, TrmA family [Candidatus Amoebophilus
           asiaticus 5a2]
          Length = 468

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 146/399 (36%), Gaps = 51/399 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEP-IHYRMRAEFH------ 50
                   Y  QLA K   +++ ++        P  +I  ++P  +YR + E+       
Sbjct: 83  GCQWQHIDYSAQLAAKEQLVKEKLIRLGRIVNPPVAKILAADPNQYYRNKLEYTFSNKRW 142

Query: 51  -----IWHDGDDLYHIMFDQQT---KERMRIDYFMPGSLLINALMIEMMATIRLEPL--- 99
                I  D     + +   +     + + I +    +   NA+ + +    R       
Sbjct: 143 LTQQEIQSDQPLDRYALGFHKPGYFDKVVDIQHCYLQAEPSNAIRLAVGQFAREHGYSFY 202

Query: 100 ----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
                +  L  +   T+ + + +V + +    +         ++           ++   
Sbjct: 203 DFRSHQGLLRNLIVRTTSTGEVMVIVQFGENQEGPIVHIMDFIQKKFPTLTSLQYIVNTK 262

Query: 156 ------NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                 +    C   + ++ E +      L ++    SF Q N+     + + V      
Sbjct: 263 YNETFYDLEVHCYAGQPFITEVI----DGLQWQIGPKSFFQTNSTQAKVLYQTVADLANL 318

Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L+ +LY G G  +  LAR   +V+ +E+ + +++ A+ N   N ++NV       K
Sbjct: 319 QGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSNVSFWLGDMK 378

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325
           +              +++     R   I  DPPR+G+    V  +   A   I+Y+SCNP
Sbjct: 379 DIFN-----------EELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSCNP 427

Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  RD+  L   + +      D FP+T H+E   +LV+
Sbjct: 428 ATQARDIHDLQDRYVLTHAQPIDMFPHTSHVENVAVLVK 466


>gi|310766625|gb|ADP11575.1| 23S rRNA 5-methyluridine methyltransferase [Erwinia sp. Ejp617]
          Length = 438

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/361 (23%), Positives = 143/361 (39%), Gaps = 30/361 (8%)

Query: 13  QLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDG--DDLYHIMFDQQT 67
           Q   K   L  ++       V    I       YR RA   +        L+    ++ T
Sbjct: 100 QQQSKAKALGHLLSKQRGEAVAVDDIITGPIWGYRRRARLGLSFQPATQTLHMGFREKST 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            E + I +       +NAL+  + A +     +R +L  ++ + + +   +V     R L
Sbjct: 160 SELVNITHCPILKPELNALLQPLHAVLSGLQAVR-RLGHVELVQADNGPLLVL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D        +L    H     + L   ++  +       V         TL +      F
Sbjct: 215 DALTTGDRQKLEQFSHKHHLSLYLAADSDSLEQVSG---VMPHYRSGDLTLTF--SPRDF 269

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   LA       D +L+LYCG GNF+L + +    V+ VE     V  
Sbjct: 270 IQVNDEVNQQMVARALAWLDLQPEDRVLDLYCGMGNFTLPMGKFAKNVVGVEGVAALVAK 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A YN   N++NNV   + + +E                    +  F  + +DP R+G   
Sbjct: 330 AGYNAELNNLNNVTYWQHNLEEDVSR------------QPWAAQGFNKVLLDPARAGAAG 377

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               + +  P  ++Y+SCNP +L RD   +L++ + +ER+ + D FP+T H+E  VL  R
Sbjct: 378 VMAHITKLAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMVLFSR 437

Query: 365 K 365
           K
Sbjct: 438 K 438


>gi|238791235|ref|ZP_04634874.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia intermedia
           ATCC 29909]
 gi|238729368|gb|EEQ20883.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia intermedia
           ATCC 29909]
          Length = 425

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 77/365 (21%), Positives = 142/365 (38%), Gaps = 32/365 (8%)

Query: 12  QQLAE--KVDRLRQMM--LAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            QL +  K D LR+++       P L  +       YR RA   + +        M   Q
Sbjct: 79  SQLQQDSKADSLRRLLVNATGACPALGPVICGPEYGYRRRARLGLLYQPKQQRLQMGFHQ 138

Query: 67  T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           T   + + + +       +  L+  +   +     +R +L  ++ + + +   +V     
Sbjct: 139 TESHDLVSVKHCPVLRPELERLLQPLYQCLSALQAVR-RLGHVELVLADNGPLLVL---- 193

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD         L D     +  + L   +   +  +  D            L      
Sbjct: 194 RHLDTLNDVDRAALTDFAQRERVAVYLAADSENLEKLIGEDP-----YYQIDGLRLAFHP 248

Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   LA         +L+L+CG GNF+L LA+    V+ VE     
Sbjct: 249 RDFIQVNDTVNQQMVAQALAWLDVQPDERVLDLFCGMGNFTLPLAKRAREVVGVEGVAEL 308

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   +YN  +N + NV     + +            + +      +  F  + +DP R+G
Sbjct: 309 VANGQYNAQSNALANVSFFHENLE------------SDISRQPWATQGFDKVLLDPARAG 356

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
                  +V+  P  ++Y+SCNP +L RD   +L+  + + ++ + D FP+T H+E   L
Sbjct: 357 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416

Query: 362 LVRKP 366
            +++P
Sbjct: 417 FMQEP 421


>gi|148654529|ref|YP_001274734.1| RNA methyltransferase [Roseiflexus sp. RS-1]
 gi|148566639|gb|ABQ88784.1| RNA methyltransferase, TrmA family [Roseiflexus sp. RS-1]
          Length = 434

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 133/364 (36%), Gaps = 42/364 (11%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            Q   +   L   +  F     ++       S+P  YR  A  H     +      +   
Sbjct: 101 AQQRFRRQILADQLAKFAGVAPELVEATAPASKPWAYRSSARLHC----ERRRVGYYAAD 156

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI---Y 123
           T+    +D        +N  +  +   +  EP     L     ++      I  +     
Sbjct: 157 TRLITELDRDPLLHPTLNQALAALRDALAGEPDDDQPLDVTLRVSEAHGYCIAAMRGRGE 216

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
            R L + WR     L   +        +      T            L      L +   
Sbjct: 217 RRRLAERWRSLCPPLAGVVFTVPPPHTVPPVGVDT------------LVEELDDLTFLLR 264

Query: 184 ENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             +F Q N      +L  + A       G LL+LYCG G F+L LAR   +V+ VE    
Sbjct: 265 PTTFFQVNVAAATTLLNLIRAGLGDEAGGRLLDLYCGAGTFTLPLARAAIQVVGVEEYPG 324

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V  A  + A NHV+NV+ V   ++    ++  +               F  I +DPPR 
Sbjct: 325 AVADAERSAAVNHVSNVRFVVGRAEAVLSSLEGD---------------FDAIVLDPPRR 369

Query: 303 GLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           G        +  +A   I+Y+SC+P +L RDL  L  ++T+ER    D FP T H+E  V
Sbjct: 370 GCHPQVRQALLERAPRRIVYVSCHPATLARDLHTLIGSYTVERATPVDLFPQTPHVESVV 429

Query: 361 LLVR 364
           +LVR
Sbjct: 430 VLVR 433


>gi|260771269|ref|ZP_05880196.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio furnissii CIP
           102972]
 gi|260613866|gb|EEX39058.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio furnissii CIP
           102972]
          Length = 440

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 148/373 (39%), Gaps = 34/373 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56
              L    +  Q+  K   L Q+M  F    L +  S P       YR RA   +  D  
Sbjct: 90  GCDLQHLAHAAQIEHKQQALSQLMAKFAGQQLAL--SPPVSACDTGYRRRARLSLLWD-K 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQS 114
               + F  + K+   I      ++L  +L   + A   L        +L  ++ + + +
Sbjct: 147 KTQQLQFGFRRKQSKSIVTVTDCAVLEPSLNALLPALHALLSGFAHPEQLGHVELVKADN 206

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
            + +V     R L     +    L          +  +  +   +       V   + V 
Sbjct: 207 TRVLVL----RHLAPLAAKDQSALEAFAAQHDLTLYRMPSSESLEHVCGEGAVYGEVGV- 261

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDR 233
             T+ +  + ++F Q N  +N  M+   LA      +  +L+L+CG GNFSL LA+   +
Sbjct: 262 --TIPF--LPSNFIQVNQPVNQAMVAQALAWLAVTPEERVLDLFCGLGNFSLPLAKLAKQ 317

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE     VE A+ N   N ++NV   + + ++             +      + +F 
Sbjct: 318 VVGVEGIDDMVERAKANATRNDLHNVSFYQANLEQ------------DMTGETWAAEKFD 365

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFP 351
            + +DP R+G       +       ++Y+SCNP +L RD  S+LS    + +L + D FP
Sbjct: 366 KVLLDPARAGAAGIVDQLAALGAKRVVYVSCNPATLARDSQSLLSQGFQLVKLGMLDMFP 425

Query: 352 YTRHMECGVLLVR 364
           +T H+E   L V+
Sbjct: 426 HTSHLESMALFVK 438


>gi|292492481|ref|YP_003527920.1| RNA methyltransferase, TrmA family [Nitrosococcus halophilus Nc4]
 gi|291581076|gb|ADE15533.1| RNA methyltransferase, TrmA family [Nitrosococcus halophilus Nc4]
          Length = 446

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 131/376 (34%), Gaps = 27/376 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHI-WHDGD 56
             +L       QL  K + L +    F     + + +        YR +A   + +    
Sbjct: 87  GCSLQHLSPGAQLQLKQETLTEQFRHFGGVEPEQWLTPLTGTDWGYRRKARLGVKFVKKK 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
           D   + F ++    +              L++  +  +        ++ QI+     +  
Sbjct: 147 DRVLVGFREKGGRLIAALECCEVLHPSVGLLLPELGELIASLSCYDRIPQIEVAVGDNAT 206

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +V     R L         +L D   A   QI L G   +T   L  +   E       
Sbjct: 207 GLV----FRHLVPLTTADMEQLADFGRAHGLQIYLQGGGIETLCLLWPESA-ELSYSQFE 261

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
            L    +   F Q N  +N  M++ VLA  +    D +L+L+CG GNF+L LA     V+
Sbjct: 262 NLEMVFLPTDFMQVNREVNSKMVQQVLALLELKSHDRVLDLFCGVGNFTLPLASSGAEVV 321

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE +   V  A  N   N + NV        E                       F   
Sbjct: 322 GVEGSAGLVARATANAKHNQLGNVNFEVADLNEL-----------DWVRHAWAQNGFSKA 370

Query: 296 FVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPY 352
            +DPPRSG   A   M       I+Y+SCNP +L RD   L     + +    + D FP+
Sbjct: 371 VLDPPRSGALTAVQQMSALQVQRIVYVSCNPATLARDAGELVNRQGYHLRYAGVMDMFPH 430

Query: 353 TRHMECGVLLV--RKP 366
           T H+E   L    RK 
Sbjct: 431 TPHVETIALFEQARKN 446


>gi|310658499|ref|YP_003936220.1| RNA methyltransferase [Clostridium sticklandii DSM 519]
 gi|308825277|emb|CBH21315.1| Uncharacterized RNA methyltransferase CTC_01941 [Clostridium
           sticklandii]
          Length = 449

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 147/390 (37%), Gaps = 46/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSE-PIHYRMRAEFHIW--HDG 55
             ++L   Y++Q++ K +++ ++        V +L++ +S  P  Y+ + EF       G
Sbjct: 79  GCSMLSVPYDEQISIKKNQIIELFNEAGHTEVADLEVLKSPSPYEYKNKMEFTFGDKEKG 138

Query: 56  DDLYHIMFDQQTKERMR-IDYFMPGSLLINALMIE-----------MMATIRLEPLLRAK 103
            +L   M  + +   +  +   M        +++                +  E  LR  
Sbjct: 139 GELMLGMHAKNSPMSIEYVHSCMIVDEDYRKILVATTEFFRNANLPHYRVLAHEGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQIQLIGRANK 157
           + +    T      IVT        D +     +L      +  LH     +       K
Sbjct: 199 VLRKGKNTGDIQVNIVTTTQLEFDMDTYANMLTKLTLNGEIKGILHTFNDSLSDAVIPEK 258

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             +       ++ L        +     SF Q N      +   V       +  + +LY
Sbjct: 259 INLLYGVTDFEDILLDK----RFNISPFSFFQTNTHGAEVLYSAVKDMIGDKKDIIFDLY 314

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G   + ++   ++++ +EI + +VEAA+ NI  N++ N + +               
Sbjct: 315 SGTGTIGITVSDKANKIVGIEIIEEAVEAAKENIKKNNITNCEFIAGDVA---------- 364

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                 ++   S   + I +DPPR+G+    +G + ++    ILYISCNP +L  DL +L
Sbjct: 365 -----TEVSKISENPELILLDPPRAGIHPKAMGDIISFNSKEILYISCNPKALMHDLKVL 419

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364
            S  + I+ +   D F  T H E  V L +
Sbjct: 420 KSAGYKIKEVVGVDLFANTPHCETIVKLQK 449


>gi|253689752|ref|YP_003018942.1| RNA methyltransferase, TrmA family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259495631|sp|C6DDJ9|RUMA_PECCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|251756330|gb|ACT14406.1| RNA methyltransferase, TrmA family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 449

 Score =  223 bits (568), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 85/358 (23%), Positives = 150/358 (41%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
           Q + K   L ++M      ++P+  +    P  YR RA   ++    +   +M  +Q+  
Sbjct: 105 QQSSKTAALMRLMTRETGAELPDASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNS 164

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + I         + AL+  +   +     ++ +L  ++ + +++   +V     R L
Sbjct: 165 HDLVDIKACPVLRPELEALLQPLRDCLSRLKAVK-RLGHVELVQAENGPLLVL----RHL 219

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D         LRD    +   + L   A+ +  CL  D  +    VAG TL +      F
Sbjct: 220 DPLHPADEQALRDFAEQQGVSVYLAPDAD-SLTCLHGD--EPVYLVAGLTLAF--SPRDF 274

Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   LA      Q  +L+L+CG GNF+L LA+    V+ VE     VE 
Sbjct: 275 IQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEK 334

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            R N   N ++NV     + ++             +      +  F  I +DP R+G   
Sbjct: 335 GRENARRNALSNVTFFHQNLED------------DVTQQPWVAQGFDKILLDPARAGAAG 382

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
               + +  P  ++Y+SCN  +L RD   +L+   T+  +A+ D FP+T H+E   L 
Sbjct: 383 VMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLVNVAMLDMFPHTGHLESMALF 440


>gi|319789139|ref|YP_004150772.1| RNA methyltransferase, TrmA family [Thermovibrio ammonificans HB-1]
 gi|317113641|gb|ADU96131.1| RNA methyltransferase, TrmA family [Thermovibrio ammonificans HB-1]
          Length = 428

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 144/376 (38%), Gaps = 38/376 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PNL-QIFRSE-PIHYRMRAEFHIWHDGD 56
                   Y +Q+  K   + + +        PN+ ++  S  P +YR R +  +     
Sbjct: 76  GCDWQHISYRKQVEFKRAVVEENLQKIGKIKRPNIDEVIPSPSPWNYRNRVQVKV----K 131

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                 F + +   + ++        +  +   +     L P L  +  +    +S  D+
Sbjct: 132 GGKVGFFAKNSHSVVEVERCPLLKEDLEGIFPRLKE---LLPKLPTEPAEFHLYSSSKDE 188

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDA-LHARKYQIQLIGRANKTKIC--LDRDYVDERLTV 173
            ++ +++ R       E         ++   + I   G +   +      RD+  E +  
Sbjct: 189 VLLKIVFPRQFKRVELELEELKELLGVNLVGFGIYRQGSSGYPERIKFFGRDFTYELVG- 247

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD 232
                 +R   +SF Q N     ++++ V       Q  L  +LYCG G  ++ +AR+  
Sbjct: 248 ---KFKFRVSADSFFQVNRFQVGNLIDRVARGAMEHQYMLAGDLYCGVGTLTIPVARYVH 304

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           R   VE    +V  A YN   N + NV      ++E  + +R                  
Sbjct: 305 RAFGVEANFSAVADALYNKDINGLRNVNFYCRETEEALKIIRE--------------NGP 350

Query: 293 KTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCRDLSILST-THTIERLALFD 348
             + VDPPRSGL++  +  +   P    ++Y+SCNP +L RD+++       +ER  + D
Sbjct: 351 DLVVVDPPRSGLNEKIIRTIATLPRLRRVIYVSCNPATLARDVALFYKYGVHMERAKVLD 410

Query: 349 QFPYTRHMECGVLLVR 364
            FP T H+E    L +
Sbjct: 411 MFPQTYHVETICFLRK 426


>gi|170730638|ref|YP_001776071.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa M12]
 gi|167965431|gb|ACA12441.1| RNA methyltransferase [Xylella fastidiosa M12]
          Length = 443

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 136/373 (36%), Gaps = 27/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHI-WHDGD 56
              L     + Q+  K   L + +      + +   S    E   YR +  F + W +  
Sbjct: 87  GCVLQHLAEDAQVVSKQRVLLESLERIGRVSPERVLSALAAESWGYRRKGRFSVRWVEKK 146

Query: 57  DLYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
               + F ++    +  +         +    I ++AT+      R  + QI+++   + 
Sbjct: 147 GRTLVGFRERDPRFVADVSVCHTVVPHVGE-KIALLATLLDSLDGRRDVPQIEFIAGDA- 204

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V  +  R L        + L +        I L     ++   L  D V     +  
Sbjct: 205 ---VVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKP 261

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             + +      F Q N G+N  M+   L     G    +L+L+CG GNF+L LAR    V
Sbjct: 262 WDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEV 321

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE AR N   N + N +                      +D       F  
Sbjct: 322 VGVEGDIGLVERARENARRNGLGNAEFFVADLT------------RDQRDAPWMRQGFDK 369

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L       +  +   D FP
Sbjct: 370 LLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFP 429

Query: 352 YTRHMECGVLLVR 364
           +T H+E   +  R
Sbjct: 430 HTAHVESIAVFDR 442


>gi|242238299|ref|YP_002986480.1| 23S rRNA 5-methyluridine methyltransferase [Dickeya dadantii
           Ech703]
 gi|242130356|gb|ACS84658.1| RNA methyltransferase, TrmA family [Dickeya dadantii Ech703]
          Length = 442

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 131/358 (36%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF--DQQT 67
           Q   K   LR +M      ++P   +       YR RA   + +       +M    + +
Sbjct: 100 QQRSKAAALRHLMRRETGVEMPEPVVIDGPDYGYRRRARLALLYQPKTRQLLMGYRREGS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            +   I         + AL+  +   +      + +L  ++ + ++    +V     R L
Sbjct: 160 HDLADIHVCPVLHPALEALLTPLRDCLAGLKAAK-RLGHVELVMAEQGPLVVL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D         L D        + L   A                +     L        F
Sbjct: 215 DVLQEADRQALNDFGARVGCALFLAPEAGALACLRGAAP-----SYRIDGLSLAFSPRDF 269

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   L        + +L+L+CG GNF+L LAR    V+ VE     VE 
Sbjct: 270 IQVNDEVNQRMVAQALEWLDPQPHERVLDLFCGMGNFTLPLARRAASVVGVEGVAALVEK 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            R N   N   NV     + +E             +      +  F  I +DP R+G   
Sbjct: 330 GRENAERNAFGNVTFFHQNLEE------------DVTRQPWAAQGFDKILLDPARAGAPG 377

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
               +V+  P  ++YISCNP +L RD   +L+  + +E+LA+ D FP+T H+E   L 
Sbjct: 378 VMSQIVKLTPGRVVYISCNPTTLARDSRVLLAAGYRLEKLAMLDMFPHTGHLESMALF 435


>gi|283768823|ref|ZP_06341734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
 gi|283104609|gb|EFC05982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bulleidia extructa
           W1219]
          Length = 436

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 155/373 (41%), Gaps = 35/373 (9%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSE-PIHYRMRAEFHIWHDGDDLYHIMF 63
           +YE+QL  K+D L + +  +         +I  SE    YR + +  I      L   +F
Sbjct: 79  EYEKQLTFKLDLLTEALWKYAKVKRHWVRKINPSENEFSYRNQCKLPIQERQGKLVCGLF 138

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRL----------EPLLRAKLFQIDYLTSQ 113
              + +   + +F+     +  +  E++A +            +  LR  + +  +  SQ
Sbjct: 139 SPNSNQFQVVHHFLTHDPEVERIRKELLAILNQHHFPAYSHKTKQGLRYIVIRCIHGISQ 198

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           +         ++ L D +++              +  L     +TK+   + +    L +
Sbjct: 199 ATLITGKDTLNKCLIDDFKKIPHLHSLHQSWNTSKQSLQFFGERTKLLFGKKH----LLI 254

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
              ++       +F Q N      +  + ++        L+E YCG G  SL+ +   ++
Sbjct: 255 PFSSIYLHVSPEAFFQLNTKQAEALYHYAVSKVDPC-HILVEAYCGIGVMSLLASSKAEQ 313

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  +E+   +++ A+ N   NH++N       + +    + +++             +  
Sbjct: 314 VYGIELNPHAIQDAKRNAELNHLDNCHFECADAADGLYKIAKKQ-------------KID 360

Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
           T+ +DPPRSGLD+A +  +       I+YISCNP +L +++++L   + I  +  FD FP
Sbjct: 361 TLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAKNIAVLKWKYQILTIQAFDLFP 420

Query: 352 YTRHMECGVLLVR 364
            T H+EC  LL +
Sbjct: 421 QTPHVECLCLLSK 433


>gi|47097757|ref|ZP_00235248.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
           1/2a F6854]
 gi|47013868|gb|EAL04910.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
           1/2a F6854]
          Length = 351

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 129/360 (35%), Gaps = 40/360 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K D + Q +      +         I   +P  YR +++F     
Sbjct: 7   GCQLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMV 66

Query: 55  GDDLYH-IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRA 102
           G       +F   + + + I+  +               L+    + +        ++R 
Sbjct: 67  GSGQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRT 126

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + +    T ++    +T    + L    RE    +  AL      +Q + +A  + I  
Sbjct: 127 IVVRTGVKTGETQLVFITN--SKKL-PKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFG 183

Query: 163 DRDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           D  ++    E +      L +     +F Q N      + + V  A      + L++ YC
Sbjct: 184 DETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYC 243

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G      A     V  ++I   S+E A+ N   N + NV      +++      +E  
Sbjct: 244 GVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE-- 301

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                      +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+
Sbjct: 302 ----------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLA 351


>gi|260775202|ref|ZP_05884100.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608903|gb|EEX35065.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 439

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 151/373 (40%), Gaps = 34/373 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              +     E Q   K   L Q+M  F      +    +  SE   YR RA   +  D  
Sbjct: 90  GCNMQHLSSEHQQMHKQQTLSQLMSKFAGQSLNLEAPIVGESE--GYRRRARISVMVDKK 147

Query: 57  --DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
              L      +Q+K+ + + +    +  ++ L+ ++ A +      +  +  ++ + + +
Sbjct: 148 TRQLKFGFRKKQSKDIVTLTHCPVLAPELDELLPDLYALLSRF-SQQENIGHVELVKADN 206

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
            + +V     R L     +    L +     +  + L+    +  +      V +   V 
Sbjct: 207 TRILVL----RHLKPLNNKDHDALLEFAKLNQITLYLMPNNEQLMLETGEAGVYQETGVN 262

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              + +    N+F Q N  +N  M+   L      + D +L+L+CG GNFSL +A+    
Sbjct: 263 ---IPFE--PNNFIQVNQQVNAQMVTQALDWLALSEQDRVLDLFCGLGNFSLPIAKQVKS 317

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE     V  A +N   N ++N +  + + ++        RE            +F 
Sbjct: 318 VIGVEGVDEMVSKATHNAQVNQIDNAQFYQANLEQDMSGQLWARE------------KFD 365

Query: 294 TIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFP 351
            I +DP R+G       +       ++Y+SCNP +L RD  S+LS    +++L + D FP
Sbjct: 366 KILLDPARAGASGIVEQVSALGATRVVYVSCNPATLARDSQSLLSQGFELKKLGMLDMFP 425

Query: 352 YTRHMECGVLLVR 364
           +T H+E   L V+
Sbjct: 426 HTSHLESMALFVK 438


>gi|269928597|ref|YP_003320918.1| RNA methyltransferase, TrmA family [Sphaerobacter thermophilus DSM
           20745]
 gi|269787954|gb|ACZ40096.1| RNA methyltransferase, TrmA family [Sphaerobacter thermophilus DSM
           20745]
          Length = 400

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 136/364 (37%), Gaps = 67/364 (18%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE+QL  K   +R+ +           +  +  S+P  YR  A F     GD  +     
Sbjct: 94  YEKQLEFKQHIVREQLRRIGKFDDPPVSPTVPCSKPYGYRNNARFSTSRQGDLGFITRPG 153

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
              + + RID  +     IN  + ++                     + + Q  V + Y 
Sbjct: 154 TGYRFQ-RIDRCLIMVPQINEALAKLQG-------------------TGAGQHQVVIRYG 193

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
               +   +  +R R                   ++   + Y  E L        +R   
Sbjct: 194 ENTGEMLIQPDLRHRQP-----------------EVESGQKYFHEALL----GRRFRISG 232

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            SF Q N      ++E V         +++ + Y G G F+++LA    RV+A+E +  +
Sbjct: 233 PSFFQTNTEQAERLVELVRERLALTGNEVVVDAYAGVGTFAILLASEARRVIAIEESPSA 292

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A+ N+    ++NV+ V    +     +                 +   I +DPPR+G
Sbjct: 293 VADAQPNLE--GISNVEYVTGKVERVLPRL---------------EIQADAIILDPPRAG 335

Query: 304 LDDATVGM-VQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
                +   ++ +P  ++Y+SC+P +L RDL IL    + +  +   D FP T H+EC  
Sbjct: 336 CHPRALEAVLEMHPQRLVYVSCDPSTLARDLRILVDGGYRLLDVTPVDMFPQTYHIECVA 395

Query: 361 LLVR 364
            L R
Sbjct: 396 ALER 399


>gi|319787470|ref|YP_004146945.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465982|gb|ADV27714.1| RNA methyltransferase, TrmA family [Pseudoxanthomonas suwonensis
           11-1]
          Length = 449

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 134/375 (35%), Gaps = 31/375 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
              L      +Q+  K   L + +      +              YR +  F +      
Sbjct: 94  GCVLQHLDEARQIGAKQQVLLENLERIGKVHPGEVLPPLTAGSWGYRRKGRFSVRRVNKK 153

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +Q  +    +         I   ++ + A +      R  + QI+++    D
Sbjct: 154 DKTLVGFREQDPRFVADLQECHTTIPEIGMKVVALSALVDGLQA-RESIPQIEFIAG--D 210

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--ERLTV 173
            AI   + H  L          L        + I L  +   +   L+    +   RL  
Sbjct: 211 DAIALTVRH--LVPLPEADRAALAAFGREHGFSIFLQPKGLDSVHPLEEPAPELSFRLPQ 268

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232
               L ++     F Q NA +N  M+   L          +L+L+CG GNF+L LAR   
Sbjct: 269 WNVELAFQ--PLDFIQVNARLNEKMIARALEMLDTSPDHRVLDLFCGLGNFTLPLARQVR 326

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE     V  AR N   N + N +     + + TQ  R      +          F
Sbjct: 327 EVVGVEGDPGLVARARANAERNGLANARFF---AADLTQDQRGTPWMRQ---------GF 374

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
             + +DPPRSG ++    + +Q    I+Y+SC+P SL RD   L     + +    + D 
Sbjct: 375 DRLLLDPPRSGAEEVLKQLPLQDIDRIVYVSCHPGSLARDAGFLVNERGYRLVSAGVMDM 434

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E   L  R
Sbjct: 435 FPHTAHVESIALFER 449


>gi|326335854|ref|ZP_08202033.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325691998|gb|EGD33958.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 469

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 128/402 (31%), Gaps = 53/402 (13%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHD- 54
            G    D  Y+ QL  K   +   +        +     +   +   YR + EF      
Sbjct: 83  GGCQWQDMNYQSQLFYKQKEVVNNLKRLGGIVPEEILPILGSEKEYFYRNKIEFSFSESR 142

Query: 55  ----------------GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98
                               +HI       + + I          NA+   +        
Sbjct: 143 WLTSEEIESKEEINNRNGLGFHIAGAWD--KVLDIHKCYLQEDPSNAIRNAIKEYANTHG 200

Query: 99  LL-------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
                       L  +    +   + ++ + +     +  +E    L          +Q 
Sbjct: 201 YTFYNPCSHSGWLRTMMIRITSIGEIMLVIQFLEERKEERKELLDYLLVQFPQI-TSLQY 259

Query: 152 IGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           I  +       D++    +  E +      L ++    SF Q N+ +  + L  V     
Sbjct: 260 IINSKPNDTIYDQEVICYHGREFIHEEMEDLRFKINAKSFFQTNS-LQAYQLYKVTRDFA 318

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            + G   + +LY G G  +  +A+   +V+ VE    ++  A+ N   N + NV      
Sbjct: 319 ALTGKELVYDLYTGTGTIAQFIAKGAKKVIGVESVPEAIADAKENAHTNQIYNVDFFVGD 378

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
            K               ++          I  DPPR G+    +  +   A   ++Y+SC
Sbjct: 379 MKNIFN-----------EEFITKHGTPDVIITDPPRDGMHKDVIAQILRIAPKRVVYVSC 427

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           N  +  RDL+++   + + ++   D FP T H+E   LL  K
Sbjct: 428 NSATQARDLALMDPMYKVVKIRPVDMFPQTYHIENVALLELK 469


>gi|119774169|ref|YP_926909.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella amazonensis
           SB2B]
 gi|143581857|sp|A1S4D3|RUMA_SHEAM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|119766669|gb|ABL99239.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella amazonensis
           SB2B]
          Length = 443

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 140/371 (37%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFH--IWHDG 55
              L      +QL  K   L  ++       + +       +  HYR RA     +  + 
Sbjct: 91  GCDLQHLSLPRQLEYKRQALGDIVSRSAAQTVTVNTDEVSGDSWHYRRRARLATLLDKET 150

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           + L     ++ +K  + ID     +  ++ L I   AT+      + +L  ++   + + 
Sbjct: 151 NQLALGFREEGSKSVVGIDSCAVLARPLSEL-ISPFATLLNRLKGKQRLGHLELTQAANG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V     R+     +     L      R+  + L G   + +         E      
Sbjct: 210 LFAVL----RVTAPLAQSDKKLLSAFADERQIALLLQGNEGELEFL---SSGHELPYYQL 262

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L       +F Q N  +N  M+   +       G+ +L+L+CG GNFSL LA+    V
Sbjct: 263 DGLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHAGERVLDLFCGVGNFSLPLAKQGAEV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N A N ++N+          ++ +  E    ++            
Sbjct: 323 VGVEGVPEMVAQAKQNAAINGLDNLSFYCAD---LSEDLAAEPWLGKI----------DK 369

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DP R+G  ++   + +  P  +LY+SCNP SL RD  +L    + + RL L D FP 
Sbjct: 370 LLLDPARAGAYESLKWLKKMKPAKVLYVSCNPASLARDSVLLFEAGYQLTRLGLVDMFPQ 429

Query: 353 TRHMECGVLLV 363
           T H E   L  
Sbjct: 430 THHSEGMALFE 440


>gi|254428372|ref|ZP_05042079.1| 23S rRNA (uracil-5-)-methyltransferase [Alcanivorax sp. DG881]
 gi|196194541|gb|EDX89500.1| 23S rRNA (uracil-5-)-methyltransferase [Alcanivorax sp. DG881]
          Length = 445

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 142/380 (37%), Gaps = 40/380 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             +L       Q+A K   LR+ +  F     +            YR +A   + +    
Sbjct: 85  GCSLQHMSPAVQVARKEAVLREQLQHFGGLEPEEWLPPLTGPVTGYRSKARLGVKYVEAK 144

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--RAKLFQIDYLTSQSD 115
              ++   + K    I       +LI  +   +     L   L  R+++ QI+      D
Sbjct: 145 GETLV-GFREKRNSFIAQLRTCEVLIPDVGHRLSELRTLMHSLESRSRIPQIELAAGDDD 203

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A++     R LD         L        +   L      T   +  +  ++RL  + 
Sbjct: 204 VALII----RHLDPLPEADQQALVGFCQNLGWHCYLQPGNESTVHRVWPEDGEQRLYYSH 259

Query: 176 ----RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARH 230
                 L +      FTQ NA IN  M+   L       +  +L+L+CG GNF++  A+ 
Sbjct: 260 PSAGVELAFH--PTDFTQVNAEINRKMVPLALDLLDISPEHTVLDLFCGLGNFTIPAAKR 317

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V+ VE+++  VE    N   N + N++       +        R+            
Sbjct: 318 AGKVVGVEVSQAMVERGYENARRNGLENLEFHAWDLSQDVSGQAWARQA----------- 366

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSILST-THTIERL 344
            +  I +DPPR+G     + MV+  P      I+Y+SCNP +L RD   L    + ++  
Sbjct: 367 -YDRILIDPPRTG----ALEMVKLMPRLGASRIVYVSCNPATLARDAGELMALGYRLKAA 421

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 422 GVMDMFPHTTHVESIAVFEK 441


>gi|71898365|ref|ZP_00680538.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1]
 gi|182681995|ref|YP_001830155.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa M23]
 gi|71731888|gb|EAO33946.1| tRNA (uracil-5-)-methyltransferase/TrmA [Xylella fastidiosa Ann-1]
 gi|182632105|gb|ACB92881.1| RNA methyltransferase, TrmA family [Xylella fastidiosa M23]
          Length = 468

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 135/373 (36%), Gaps = 27/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L     + Q+  K   L + +      + +       +E   YR +  F +      
Sbjct: 112 GCVLQHLAEDAQVVSKQRVLLESLERIGCVSPERVLPALAAESWGYRRKGRFSVRWVEKK 171

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINAL--MIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              ++   +  +   +        ++  +   I ++AT+      R  + QI+++   + 
Sbjct: 172 GRTLV-GFREHDPRFVADVSVCHTVVPQVGEKIALLATLLDSLDGRCDVPQIEFIAGDA- 229

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V  +  R L        + L +        I L     ++   L  D V     +  
Sbjct: 230 ---VVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKP 286

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             + +      F Q N G+N  M+   L     G    +L+L+CG GNF+L LAR    V
Sbjct: 287 WDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEV 346

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE AR N   N + N +                      +D       F  
Sbjct: 347 VGVEGDIGLVERARENARRNGLGNAEFFVADLT------------RDQRDAPWMRQGFDK 394

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L       +  +   D FP
Sbjct: 395 LLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFP 454

Query: 352 YTRHMECGVLLVR 364
           +T H+E   +  R
Sbjct: 455 HTAHVESIAVFDR 467


>gi|94967169|ref|YP_589217.1| (Uracil-5)-methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549219|gb|ABF39143.1| 23S rRNA m(5)U-1939 methyltransferase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 441

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 93/384 (24%), Positives = 158/384 (41%), Gaps = 42/384 (10%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGD 56
            G      QY +Q+  K   L + +       L+       +EP+ YR R    + H   
Sbjct: 79  GGCQYQHLQYAEQVKAKAQILEETLSRTAKLKLEQPIQTHAAEPLGYRNRTRMRVSHVPQ 138

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                 +   +   + ++     S LIN ++  + A  R E + R ++ ++ +  +  D 
Sbjct: 139 -FAIGYYRFGSHSLLPVEQCPISSPLINRVLQGLWAAGREERIAR-EVREVQFFANHDDS 196

Query: 117 AIVTL--IYHRLLDDAWRECAIRLRDALHAR----KYQIQLIGRANKTKICLDRD----- 165
            ++    I H    DA +     LR  +        ++      +   +  L R      
Sbjct: 197 RLLLELYIDHHAEPDALQPMIETLRGKMPEIAGVAVFRGAPADDSEDQRAPLTRAKASPG 256

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
             + +  L    +   Y+    +F Q N  +   M E V     G     L+LY G G F
Sbjct: 257 VFFGERSLRYKTKRHEYQVSAGAFFQTNRFLLDEMAETVTRGHSGKLA--LDLYSGGGFF 314

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA  F++V+AVE +  S    + N     + NVK VR  ++EF +   R+       
Sbjct: 315 SLPLADQFEKVIAVEASGHSQADLKTNA----LRNVKAVRSGTEEFLRGEGRQL------ 364

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHT 340
                  R   + VDPPR+GL + T  ++   +   + Y+SC+P +L RD+ +L  +   
Sbjct: 365 -------RPDLVVVDPPRAGLGEKTSHLIGRMSVGRVTYVSCDPATLSRDMKVLVESGFR 417

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +E + LFD FP T H+E  + LVR
Sbjct: 418 VEEVHLFDLFPQTYHLESVLHLVR 441


>gi|238786792|ref|ZP_04630593.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia frederiksenii
           ATCC 33641]
 gi|238725160|gb|EEQ16799.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia frederiksenii
           ATCC 33641]
          Length = 425

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 140/365 (38%), Gaps = 32/365 (8%)

Query: 12  QQLAE--KVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            QL +  K D L+++M   +        +       YR RA   + +        M  +Q
Sbjct: 79  SQLQQQSKADSLQRLMVREMGVCPELDPVICGPEYGYRRRARLGLLYQPKRQQLQMGFRQ 138

Query: 67  T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           T   + + + Y       +  L+  +   +     +R +L   + + + +   +V     
Sbjct: 139 TESHDLVCVKYCPVLRPELERLLSPLYQCLSALQAVR-RLGHAELVLADNGPLLVL---- 193

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD       + L +     +  + L   ++K +     D            L      
Sbjct: 194 RHLDTLKEVDRVALTEFAKREQVAVYLAADSDKLEKLFGEDP-----YYQIEGLRLAFHP 248

Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   +          +L+L+CG GNF+L LA+    V+ VE     
Sbjct: 249 RDFIQVNDAVNQQMVAQAIVWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAAL 308

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   +YN   N + N      + +            + +      +  F  + +DP R+G
Sbjct: 309 VANGQYNAFNNALPNASFFHENLE------------SDISCQPWATQGFDKVLLDPARAG 356

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
                  +++  P  ++Y+SCNP +L RD   +L+  + + ++ + D FP+T H+E   L
Sbjct: 357 AAGVMSHIIKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416

Query: 362 LVRKP 366
            +++P
Sbjct: 417 FIQEP 421


>gi|119944302|ref|YP_941982.1| RNA methyltransferase, TrmA family protein [Psychromonas ingrahamii
           37]
 gi|143581743|sp|A1SSB8|RUMA_PSYIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|119862906|gb|ABM02383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychromonas
           ingrahamii 37]
          Length = 444

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 142/371 (38%), Gaps = 27/371 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
              L       Q+  K D L  +   F     Q            YR  A F +  D  +
Sbjct: 91  GCDLQHLNQAAQIQIKSDGLLSLFQRFAKKVPQQLEKPIIDKAWEYRRTARFGLQFDKKN 150

Query: 58  LYHIMF--DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
               M     Q+ E +           +  L+  +   +      +A L  ++ L   +D
Sbjct: 151 KQLKMGLRRAQSNELIDQKVCPVLLPELECLIPPLKILLNSLQ-CKAHLGHVELL--YAD 207

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           Q  V L+ H     +     I    AL    +  Q    +N++        +  RL    
Sbjct: 208 QGAVVLLRHMKTLTSPDLQLITAFSALQKVNFFGQ--ASSNQSVCLAGEANLSYRLPEWD 265

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
            +L +      F Q N+ IN  M+   +      + D +L+L+CG GNF+L +AR  + V
Sbjct: 266 CSLSF--TPTDFLQVNSDINKKMVSQAMQWLALEKNDSVLDLFCGLGNFTLPIARQVESV 323

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E  +  V+ A  N   N++ N +  +                  L + +  +  F  
Sbjct: 324 VGIEGVQQMVDRATANAQLNNLQNARFYQAD-----------LSGENLIEQEWANQNFNK 372

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352
           + +DP R+G  D    + Q  P HILY+SC+P +L RD   +L   + +++L L D FP 
Sbjct: 373 VLLDPARAGALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDKGYKLDKLGLLDMFPQ 432

Query: 353 TRHMECGVLLV 363
           T HME   L  
Sbjct: 433 TAHMESMALFT 443


>gi|197284125|ref|YP_002149997.1| 23S rRNA 5-methyluridine methyltransferase [Proteus mirabilis
           HI4320]
 gi|227358009|ref|ZP_03842351.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|226725384|sp|B4EUF2|RUMA_PROMH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|194681612|emb|CAR40617.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis HI4320]
 gi|227161744|gb|EEI46776.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 441

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 79/360 (21%), Positives = 144/360 (40%), Gaps = 27/360 (7%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-TK 68
           Q   K + L  ++       +    +       YR RA   + +       + F Q  + 
Sbjct: 102 QRTTKAEVLSHLIKRETNVVISAQPVIAGAEYGYRRRARLGLRYHPKKGLVMGFRQALSN 161

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           + + +         +N L++ +   ++   ++R  L  ++ + + +   +V L +   L 
Sbjct: 162 DLVMVTQCPVLKPQLNVLLLPLWQCLKQLSVVRD-LGHVELVLADNG-PLVILRHLSPLS 219

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +  ++    L D  H  +  I L G   +         +++        L        F 
Sbjct: 220 EGDKQL---LDDFSHHAQVMIYLAGDNGE---IAQLTTIEKEPFYQIEGLKLHFAPTDFI 273

Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q N  IN  M+   +A       D +L+L+CG GNF+L +A+  D+V+ VE     V  A
Sbjct: 274 QVNDEINHKMVAQAIAWLDLSPNDRVLDLFCGMGNFTLPMAKRVDKVVGVEGVPALVAMA 333

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + N   N ++NV+           AM   +E             F  + +DP R+G    
Sbjct: 334 KKNAELNQLDNVQFWHADLSADFSAMPWAQE------------GFNKVLLDPARAGAAQV 381

Query: 308 TVGMVQAY-PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              +V      I+Y+SCNP +L RD   +L + + + +L + D FP T H+E   L +RK
Sbjct: 382 MSHIVTLSAEKIVYVSCNPTTLARDSKILLDSGYQLTQLRMLDMFPQTGHLESMALFIRK 441


>gi|213962114|ref|ZP_03390378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga
           sputigena Capno]
 gi|213955120|gb|EEB66438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga
           sputigena Capno]
          Length = 470

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 79/403 (19%), Positives = 141/403 (34%), Gaps = 55/403 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQ---MMLAFQVPN--LQIFRSEPIHYRMRAEFHI----W 52
                   YE QL  K   +      +    +P     +       YR + EF      W
Sbjct: 83  GCKWQDMNYESQLFYKQKEVENNLVRLGKITIPELMPIVASENIYFYRNKMEFSFSDMRW 142

Query: 53  HDGDDLYHIMFDQQTK-----------ERMRIDYFMPGSLLINALMIEM----------- 90
              +++ +    +Q             + + ID         NA+ +E+           
Sbjct: 143 LTPEEIQNADTIEQRNGLGFHIAGAWDKILDIDKCYLQEDPSNAIRLEIKRFALENNIAF 202

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL---LDDAWRECAIRLRDALHARKY 147
            +  +   +LR+ + +I   T +    I      +    L +   +   ++    +    
Sbjct: 203 YSPRQQTGVLRSMMIRISS-TGEIMLVIQFFSDSKKCNLLLEHIAQTFPQITSLQYCINS 261

Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           +          KI    D + E +      L ++    SF Q N+    H L  +     
Sbjct: 262 KGNDAIYDQDLKIYKGTDCIYEEM----EGLRFKINAKSFYQTNSKQA-HKLYQITRDFA 316

Query: 208 GIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            ++GD  + +LY G G  +  +AR   +V+ VE    ++  A+ N  AN + NV      
Sbjct: 317 DLKGDELVYDLYTGTGTIAQFVARKAKKVVGVEAVPEAIADAKANAKANGIENVSFYVGD 376

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
            K                     +     I  DPPR G+    V  +   A P I+Y+SC
Sbjct: 377 MKNVFNDT-----------FIKANGTPDVIITDPPRDGMHKDVVEQILQIAPPKIVYVSC 425

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           N  +  RDL++L   + + ++   D FP T H+E  VLL ++ 
Sbjct: 426 NSATQARDLALLDEMYKVTKVQPVDMFPQTYHVENVVLLEKRN 468


>gi|238923775|ref|YP_002937291.1| tRNA (uracil-5-) -methyltransferase [Eubacterium rectale ATCC
           33656]
 gi|238875450|gb|ACR75157.1| tRNA (uracil-5-) -methyltransferase [Eubacterium rectale ATCC
           33656]
          Length = 470

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 148/410 (36%), Gaps = 61/410 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF--------RSEPIHYRMRAEFHIW- 52
             T     YE+QL  K+ ++++++        +            +   YR + EF    
Sbjct: 80  GCTYQTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGIHGSPKKSEYRNKMEFSFGD 139

Query: 53  -HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLE-----------PL 99
            +    L   M  + +  + + +            ++   +                   
Sbjct: 140 EYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIPYFHRATHKGY 199

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-----------RECAIRLRDALHARKYQ 148
           LR  L +    T +    +VT       ++             R    R +  LH +   
Sbjct: 200 LRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGRFKGVLHTKNDS 259

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
           +  + +   T++     Y  E+L      L ++    SF Q N+     + E       G
Sbjct: 260 VADVVKNEGTEVLYGDSYFYEKLL----GLKFKITPFSFFQTNSLGAEVLYETAREFILG 315

Query: 209 IQGD------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              D      + +LY G G  + ++A     V+ VEI + +V AA+ N A N ++N K +
Sbjct: 316 DNKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALNGLDNCKFI 375

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320
                              LK +D    +   I +DPPR G+    +G +  Y   +++Y
Sbjct: 376 AGDV---------------LKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVY 420

Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGW 369
           ISC P SL RDL I     + +E++   D FP T H+E  VL+ +   G 
Sbjct: 421 ISCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVETVVLMSKVNPGK 470


>gi|50122491|ref|YP_051658.1| 23S rRNA 5-methyluridine methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|115298496|sp|Q6D178|RUMA_ERWCT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|49613017|emb|CAG76468.1| 23S rRNA (uracil-5-)-methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 450

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 139/358 (38%), Gaps = 30/358 (8%)

Query: 13  QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
           Q + K   L +MM      ++    +    P  YR RA   ++    +   +M  +Q+  
Sbjct: 105 QQSSKTAALMRMMTRETGIELSAASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNS 164

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + I         + AL+  +   +     ++ +L  ++ + +++   +V     R L
Sbjct: 165 HDLVDIKACPVLRPELEALLQPLRDCLSQLSAVK-RLGHVELVQAENGPLLVL----RHL 219

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D         LRD    +   + L   A         + V          L        F
Sbjct: 220 DPLHPADEQALRDFAQRQGVSVYLAPDAESLTCLHGEEPV-----YHVAGLTLAFSPRDF 274

Query: 188 TQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   LA      Q  +L+L+CG GNF+L LA+    V+ VE     VE 
Sbjct: 275 IQVNDAVNQQMVAQALAWLDVQSQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEK 334

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            R N   N ++NV     + ++             +      +  F  I +DP R+G   
Sbjct: 335 GRENARRNALSNVTFFHQNLED------------DVTQQPWAAQGFDKILLDPARAGAAG 382

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
               + +  P  ++Y+SCN  +L RD   +L+  + +  +A+ D FP+T H+E   L 
Sbjct: 383 VMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLDMFPHTGHLESMALF 440


>gi|325295665|ref|YP_004282179.1| RNA methyltransferase, TrmA family [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066113|gb|ADY74120.1| RNA methyltransferase, TrmA family [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 432

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 150/377 (39%), Gaps = 40/377 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNL-QIFRSEP-IHYRMRAEFHIWHDGD 56
                  +YE Q+  K + L + +        PN+ ++  SE   +YR RA+  +     
Sbjct: 80  GCDWQHIEYEAQVKFKRNILEENLQKIGRIKKPNIDEVIPSESGWNYRNRAQLKV----K 135

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
           +     F + + + + I+        I  +M ++   +   P   +   +    +S  ++
Sbjct: 136 NGKVGFFAKGSHQVVDIERCFLLKEDIQDIMPKLKRLLEELPTEPS---EFHIYSSSKNE 192

Query: 117 AIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC--LDRDYVDERLTV 173
            ++ ++Y  +          +R    ++   + I  +      +      RD+  E +  
Sbjct: 193 VLLKIVYSGKFKKVNLTTEDVRKILEVNLVGFGIYKVCSDGYPERIKFFGRDFTYETVG- 251

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD 232
                 +R   +SF Q N     ++++ V  A    Q +L  +LYCG G  ++ + R+  
Sbjct: 252 ---KFKFRVSADSFFQVNRFQVFNLIDKVSKAAMEHQYNLAGDLYCGVGTLTIPVGRYVH 308

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           R   VE    ++  A YN   N + +V      ++E                  + ++  
Sbjct: 309 RAFGVEANFSAISDALYNKDINGLRSVNFYCRETEEGLD--------------IVKNHNP 354

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDSLCRDLSILSTTHTI--ERLALF 347
             + VDPPRSGL    V  +   P    I+Y+SCNP +L RD+++    + I  ER  L 
Sbjct: 355 DFVVVDPPRSGLSQRVVRELANLPRLKKIVYVSCNPSTLARDIALFHQ-YGINMERAKLI 413

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP T H+E    L +
Sbjct: 414 DMFPQTYHVETIAFLRK 430


>gi|315179124|gb|ADT86038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio furnissii NCTC
           11218]
          Length = 443

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 148/376 (39%), Gaps = 37/376 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWHDGD 56
              L    +  Q+  K   L Q+M  F    L +  S P       YR RA   +  D  
Sbjct: 90  GCDLQHLAHAAQIEHKQQALSQLMAKFAGQQLAL--SPPVSACDTGYRRRARLSLLWD-K 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQS 114
               + F  + K+   I      ++L  +L   + A   L        +L  ++ + + +
Sbjct: 147 KTQQLQFGFRRKQSKSIVTVTDCAVLEPSLNALLPALHALLSGFAHPEQLGHVELVKADN 206

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
            + +V     R L     +    L          +  +  +   +       V      A
Sbjct: 207 TRVLVL----RHLAPLAAKDQSALAAFAAQHDLTLYRMPSSESLEHVCGDGAV---YGEA 259

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAA----TKGIQGDLLELYCGNGNFSLVLARH 230
           G T+ +  + ++F Q N  +N  M+   LA         +  +L+L+CG GNFSL LA+ 
Sbjct: 260 GVTIPF--LPSNFIQVNQQVNQAMVAQALAWLAVTPDTPEERVLDLFCGLGNFSLPLAKL 317

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V+ VE     VE A+ N   N ++NV   + + ++             +      + 
Sbjct: 318 AKQVVGVEGIDDMVERAKANATRNDLHNVSFYQANLEQ------------DMTGETWAAE 365

Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFD 348
           +F  + +DP R+G       +       ++Y+SCNP +L RD  S+LS    + +L + D
Sbjct: 366 KFDKVLLDPARAGAAGIVDQLAALGAKRVVYVSCNPATLARDSQSLLSQGFQLVKLGMLD 425

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   L V+
Sbjct: 426 MFPHTSHLESMALFVK 441


>gi|308272258|emb|CBX28864.1| Uncharacterized RNA methyltransferase CT0009 [uncultured
           Desulfobacterium sp.]
          Length = 470

 Score =  222 bits (566), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 135/394 (34%), Gaps = 56/394 (14%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDG-------- 55
            Y++QL  K   +++ +    +      +  I       YR + EF              
Sbjct: 94  NYDRQLYYKQQHVKEALEHIGLLQGVLVHPVIASESIFAYRNKMEFSCSDKKWVLPSEFV 153

Query: 56  DDLYHIMFDQQTK------ERMRIDYFM----PGSLLINAL-------MIEMMATIRLEP 98
                  F           + + I   +     G+L++N +        I +      E 
Sbjct: 154 PGEKTAGFALGLHVPGTFDKVLDIKSCLLQPDTGNLILNDVKDFIKNSDIPVYGLRSHEG 213

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGR 154
             R  + +      +    I+T +      + L D   E    +   ++        +  
Sbjct: 214 FWRFLMLRNSAAYGKWMVNIITSVQENKIVKPLSDMLMEKYPDVVSVINNITSSKAGVAI 273

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDL 213
                +      + ++L V      +    NSF Q N      +   V   A    +  +
Sbjct: 274 GEYENVLAGYSCITDKLGV----FEFEISANSFFQTNTKGAQILYNKVKEFAQLSGKETV 329

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           ++LY G G   + L+     +  +EI + SV  A+ N   N ++N   +    K      
Sbjct: 330 IDLYSGTGTIPIFLSEDASEISGIEICESSVSDAKKNCIINGISNCTFITGDIK------ 383

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
                 N    ID    +   I +DPPR G+    V  V   +   I+Y+SCNP +L RD
Sbjct: 384 ------NSFSKIDK---KPDVIIIDPPRVGMHKDVVKQVVDISAERIVYVSCNPATLARD 434

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L +L   + +  +   D FP+T H+E    L +K
Sbjct: 435 LLVLKDYYDVMEVQPVDMFPHTFHIESVARLEKK 468


>gi|300721894|ref|YP_003711172.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus nematophila ATCC
           19061]
 gi|297628389|emb|CBJ88954.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus nematophila ATCC
           19061]
          Length = 451

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 139/352 (39%), Gaps = 25/352 (7%)

Query: 19  DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYF 76
           + L Q     ++    I +S    YR RA   + ++      +M  +Q  T + + I   
Sbjct: 109 EHLIQRETGIKMSAHPIIQSPEYGYRRRARLGLQYNVKQRTLLMGFRQNQTNDLINIKRC 168

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
                 +  L+  +   +     ++ +L  ++ + + +   I+     R LD    E   
Sbjct: 169 PVMRPELEQLLQPLFQCLNGLNAVK-RLGHVELVLADNGPLIIL----RHLDPLKHEDRA 223

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L         ++ L G     +  L +   +    V G  L++      F Q N  +N 
Sbjct: 224 ALSIFSVQYNVKVYLAGDEKSLE-SLTKGQAEPWYQVDGLKLVF--SPRDFIQVNDEVNQ 280

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            M+   L        D +L+L+CG GNF+L +A     V+ VE     V + +YN   N 
Sbjct: 281 QMVAQALMWLDLQPTDRVLDLFCGMGNFTLPMATKVQAVVGVEGVAALVSSGQYNARLNE 340

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + NV     + +            + +      +  F  + +DP R+G       +V+  
Sbjct: 341 LKNVDFFHENLE------------SDIHQQPWAALGFNKVLLDPARAGAAGVMSHIVKLA 388

Query: 316 P-HILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P  ++Y+SCNP +L RD  + L   + +  + + D FP+T H+E   L  R+
Sbjct: 389 PDKVVYVSCNPTTLARDSKVMLEAGYHLVSVRMLDMFPHTGHLESMALFSRE 440


>gi|292487220|ref|YP_003530092.1| putative SAM-dependent methyltransferase [Erwinia amylovora
           CFBP1430]
 gi|292900405|ref|YP_003539774.1| 23S_rRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291200253|emb|CBJ47381.1| 23s rRNA (uracil-5-)-methyltransferase [Erwinia amylovora ATCC
           49946]
 gi|291552639|emb|CBA19684.1| putative SAM-dependent methyltransferase [Erwinia amylovora
           CFBP1430]
 gi|312171321|emb|CBX79580.1| putative SAM-dependent methyltransferase [Erwinia amylovora ATCC
           BAA-2158]
          Length = 438

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 76/337 (22%), Positives = 133/337 (39%), Gaps = 27/337 (8%)

Query: 34  QIFRSEPIHYRMRAEFHIWHDG--DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMM 91
            +       YR RA   +        L+    ++ T+E + I +       +NAL+  + 
Sbjct: 124 DVITGPAWGYRRRARLGLSFQPATQTLHMGFREKSTRELVNITHCPILKPELNALLQPLH 183

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
           A +     +R +L  ++ + + +   +V     R LD        +L    H     + L
Sbjct: 184 AVLSGLQAVR-RLGHVELVQADNGPLLVL----RHLDALTTGDRQKLEQFSHKYNVSLYL 238

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
              ++  +                  L        F Q N  +N  M+   L        
Sbjct: 239 AADSDSLEQVSGSMP-----HYRSDDLTLTFSPRDFIQVNDEVNQKMVARALVWLDLQPE 293

Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D +L+L+CG GNF+L + +    V+ VE     V  A YN   N++NNV   + + +E  
Sbjct: 294 DRVLDLFCGMGNFTLPIGKFAKNVVGVEGVAALVAKAGYNAELNNLNNVTFWQHNLEEDV 353

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLC 329
                             +  F  + +DP R+G       + +  P  ++Y+SCNP +L 
Sbjct: 354 SR------------QPWAAQGFNKVLLDPARAGAAGVMAHIARLAPQRVVYVSCNPTTLA 401

Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD   +L + + +ER+ + D FP+T H+E  VL  RK
Sbjct: 402 RDSEILLGSGYQLERVTMLDMFPHTGHLESMVLFSRK 438


>gi|89095077|ref|ZP_01168004.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92]
 gi|89080638|gb|EAR59883.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanospirillum sp. MED92]
          Length = 449

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 134/372 (36%), Gaps = 29/372 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
              L   ++ +Q+  K   +   +      N +            YR      I      
Sbjct: 98  GCDLQHLEHSEQIKAKESLVLDQLQRLGKFNPESTTPPLSGSDQEYRRSCRIGINQLMRD 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                    + + + +++D        IN ++ ++ A +      +        L+    
Sbjct: 158 GTPIIGFRRRGSSKLLQVDNCPILINPINKILGKLKAVLSEADSCKE--ITHAELSMGDQ 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           Q  +TL   + L ++      +L +    R Y        N  +I    D  D    +  
Sbjct: 216 QGAMTLRIKKPLPESLSSSLQKLAEDNEFRLY------FDNGQQINAFGDEADLSYQLEK 269

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
                      F Q NA +N  M+   +        D +L+L+ G GNFSL LA     V
Sbjct: 270 SETQIGFKPGDFIQVNASVNTQMINRAMDWLDLKDNDRVLDLFSGVGNFSLPLATKAGSV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE  +  V+ A+ N     +NN +  R    +             LK +  +   F  
Sbjct: 330 IGVEGVEDMVQRAQNNAKQAGLNNCEFYRADLSK------------DLKALPWYKQGFSK 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           I +DPPR+G  +    + Q     ILY+SCNP +L RD   ++   +   +  + D FP+
Sbjct: 378 ILIDPPRTGALEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKASKFCVMDMFPH 437

Query: 353 TRHMECGVLLVR 364
           T H+E  VL  +
Sbjct: 438 TSHVESLVLFEK 449


>gi|308535284|ref|YP_002138867.2| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem]
 gi|308052629|gb|ACH39071.2| RNA methyltransferase, TrmA family [Geobacter bemidjiensis Bem]
          Length = 444

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 143/375 (38%), Gaps = 25/375 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGD 56
                   Y +QL +K +     +        ++        E   YR R +  +   G 
Sbjct: 82  GCDWQHLPYAEQLKQKGEIFADTLARIGKVPRELVLPVSPSPECFGYRSRIQLKVARKGG 141

Query: 57  DLYHIMFDQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                 F + + + + +       + L+N  + E+   +   P L   + Q+D       
Sbjct: 142 IPTLGFFKRGSHDVVDLAAGCALAAPLLNQALAEVRGILPRLPQLEG-ITQVDLAMGDDG 200

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER----L 171
           ++I    Y      +  +C +  R  L +        G   +       D +       L
Sbjct: 201 ESIAVFHYRGKDAASLLDCLLAARPELPSVTGAYVKTGEKGEMSAVFGVDSLSYGVPAGL 260

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH 230
               R +  R     F+Q N   N+ +++ V       +G  +L+LYCGNGN S+ +A  
Sbjct: 261 FPGSREVRLRFSRGGFSQVNYRQNLELIKTVGEWGALREGARVLDLYCGNGNISVPIAPL 320

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V+ VE   PS+  A  N  AN   N + +   +    + + + +E            
Sbjct: 321 VGEVVGVEGYAPSIVDAAANAEANGALNARYLVGDAALSVRRLAKRKE------------ 368

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
           +F  + +DPPR+G + A    + A   ILY+SC+P +L RDL  L    + + R    D 
Sbjct: 369 KFDLVVLDPPRAGAEAAGELAILAPERILYVSCDPATLARDLGQLCGAGYRVARSKPVDM 428

Query: 350 FPYTRHMECGVLLVR 364
           FP T H+E    L+R
Sbjct: 429 FPQTYHLESVTELIR 443


>gi|308187944|ref|YP_003932075.1| enzyme [Pantoea vagans C9-1]
 gi|308058454|gb|ADO10626.1| putative enzyme [Pantoea vagans C9-1]
          Length = 456

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 158/368 (42%), Gaps = 46/368 (12%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQQ-T 67
           Q   K   L +M+      N+   ++   +P  YR RA   + W +      + F Q+ +
Sbjct: 118 QQQSKAQALSRMLSRAAAQNVAVDEVIAGQPWGYRRRARLGLQWQNKAQRLQMGFRQEAS 177

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + I +    +  + AL++ +   +     +R +L  ++ + + +   ++        
Sbjct: 178 NDLVDIQHCPILAPELEALLVPLHQCLSALRAVR-RLGHVELVLADNGPLMI-------- 228

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY------- 180
                   +R  DALHA   + +L   ++K ++ L  D  +E L     ++ +       
Sbjct: 229 --------LRHLDALHADDRE-KLEQFSHKHQLMLFLDAGEEELNALNESVPFYHSHQLK 279

Query: 181 -RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q N  +N  M+   +A       D +L+L+CG GNF+L +      V+ VE
Sbjct: 280 LTFSPQDFIQVNDAVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGIFVQNVVGVE 339

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                V  A YN   N++ NV   + + +E             +      +  F  + +D
Sbjct: 340 GIAALVRQAAYNADLNNLKNVSFFQHNLEE------------EVSRQPWAAQGFNKVLLD 387

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +V+  P  ++Y+SCNP +L RD   +LS  + +ER+A+ D FP+TRH+
Sbjct: 388 PARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDSQTLLSAGYQLERVAMLDMFPHTRHL 447

Query: 357 ECGVLLVR 364
           E  VL  +
Sbjct: 448 ESMVLFRK 455


>gi|257066182|ref|YP_003152438.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM
           20548]
 gi|256798062|gb|ACV28717.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM
           20548]
          Length = 415

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 156/369 (42%), Gaps = 36/369 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
             T++   Y++Q+  K + + + +      ++ +L+I  SE + YR +    +   G   
Sbjct: 76  GCTIMDINYDEQIKLKKNLITKAIKKTCAIEIDDLEIITSETLSYRNKIRLQVDKKGRLS 135

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           Y+    + + + + I   +  +  I   + ++   +         + +   + S S + I
Sbjct: 136 YN---KKSSNDLVEIKDCLLANEHIIENLGKIQNLVTTIVKDLGNIIREISIRSNSCE-I 191

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +  IY +  +  ++      +D  +      +   +       L +D+    L    +  
Sbjct: 192 LLNIYSKEEEKLYKYLKENHKDLPYNINIINKKKIK------TLGKDH----LIFKVKDK 241

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
            ++  ++ F Q N     ++ +            LL+L+CG+G  S+ L  + D ++ +E
Sbjct: 242 SFKVSKDDFYQVNDYQIENLYQNA-RKYLEKNKKLLDLFCGSGISSIAL--NDDNIVGIE 298

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I K +++ A+ N   N++ + K +  ++    Q               I   + +T+ VD
Sbjct: 299 INKSAIKDAKENAKINNLTDYKFIDKNANYIDQKF-------------IEKEKIQTVTVD 345

Query: 299 PPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRH 355
           PPR+GLD   +  +      +I+YISCNP +L RD+   +   + ++ +   D FP T H
Sbjct: 346 PPRAGLDKEIIKTLAKTKIKNIIYISCNPQTLARDIKRFMDRGYELKEIKAVDMFPQTMH 405

Query: 356 MECGVLLVR 364
           +E   L+ +
Sbjct: 406 VEAIALIQK 414


>gi|156740571|ref|YP_001430700.1| RNA methyltransferase [Roseiflexus castenholzii DSM 13941]
 gi|156231899|gb|ABU56682.1| RNA methyltransferase, TrmA family [Roseiflexus castenholzii DSM
           13941]
          Length = 439

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 138/372 (37%), Gaps = 45/372 (12%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           + Q   +   L   +  F   +  +     F S+P  YR     H     D      ++ 
Sbjct: 99  DAQQRLRRQILADQLAKFAGVDPAVVEATAFASKPWEYRNNTRLHC----DGRRIGYYES 154

Query: 66  QTKERMRIDYFMPGSLLINALMIEMM----ATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
            T+    +D+      ++N  +  +       +   P L   L ++         A+   
Sbjct: 155 NTRSIAELDHDPLLHPVLNEALAALRSALADELDDAPPLEVTL-RVSEAYGYCIAALRGR 213

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
              R L   WR     L   +        L          L  D + E L      L + 
Sbjct: 214 GDRRSLAARWRARCPVLAGVVFTVPPPHMLPP--------LGADTLVEELA----DLTFL 261

Query: 182 QIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
               +F Q N      +L  + A      +G LL+LYCG G F+L LAR+   ++ VE  
Sbjct: 262 LRPTTFFQVNVAAAATLLNLIRAGLGDEARGRLLDLYCGAGAFTLPLARNAIEIVGVEEY 321

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +V  A  + A NH++NV+ +  S++     +                  F  + +DPP
Sbjct: 322 AGAVADAERSAAVNHISNVRFITGSAEAVLANLDGP---------------FDAVVLDPP 366

Query: 301 RSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           R G     +  +  +A   I+Y+SC+P +L RDL  L +  + + R    D FP T H+E
Sbjct: 367 RRGCHPRVLHALIERAPRRIVYVSCHPATLARDLKTLIAGGYAVVRATPVDLFPQTPHIE 426

Query: 358 CGVLLVRKPSGW 369
             V L+R  S  
Sbjct: 427 SVVALMRAGSAQ 438


>gi|269216883|ref|ZP_06160737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
           700122]
 gi|269129690|gb|EEZ60774.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
           700122]
          Length = 442

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 139/376 (36%), Gaps = 41/376 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ---------IFRSEPIHYRMRAEFHIWHDGDDLYH 60
           YE+QL EK D +   ++     + +         I    P  YR + EF    D      
Sbjct: 88  YERQLVEKRDNIVAQLVKVAHVDAERAQSIVAPCIPSDRPWGYRNKLEFACATDASGFTM 147

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAIV 119
               +     +    F  GS  +      +   +  L       ++++    S   +++ 
Sbjct: 148 GYHRKGADGIVSPKEFPLGSHALAKAPKAVRGALRFLAGSNDLGIYRVGIRGSMRTKSLE 207

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR---ANKTK---ICLDRDYVDERLTV 173
             ++    +      A  L  AL A        G    A K K   +     Y  ERL  
Sbjct: 208 VALWTEGGNFPRVAVAGTLARALKASSIVRVATGGPQGARKVKGVEVLHGTGYWKERLCQ 267

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
                 ++    SF Q N      ++E  L A    +GD + +LYCG G F++ LAR   
Sbjct: 268 Q----SFKITAPSFFQVNTEQAERLVETTLEALDVREGDEVADLYCGVGTFTIPLARTGA 323

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V  VE    SV   R       ++ + ++   +          RE   L  +D      
Sbjct: 324 HVYGVESYSSSVRDLRRVAEETELD-IDVIGGDAA---------RELPMLGHLDA----- 368

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQ 349
             + VDPPR+GLD + V  +       + Y+SC+P +  RD++      + + R    D 
Sbjct: 369 --VLVDPPRAGLDASLVKSIAEAGPTKVAYVSCDPATWARDVARFEAQGYELTRATPVDL 426

Query: 350 FPYTRHMECGVLLVRK 365
           FP T H+E   LL+RK
Sbjct: 427 FPQTYHVETTSLLIRK 442


>gi|332881940|ref|ZP_08449582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332680175|gb|EGJ53130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 467

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 141/391 (36%), Gaps = 49/391 (12%)

Query: 10  YEQQLAEKVDRLRQ---MMLAFQVPN--LQIFRSEPIHYRMRAEFHI----WHDGDDLYH 60
           YE+QL  K   +      +    +P     I   +   YR + EF      W   +++  
Sbjct: 91  YERQLYYKQKEVENNLVRLGRIAIPQLMPIIGSDDIYFYRNKMEFSFSDMRWLTPEEIKK 150

Query: 61  IMFDQQTK-----------ERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRA 102
                              + + I      ++  NA+ +E+        +        + 
Sbjct: 151 ADEITDRNGLGFHIAGAWDKVLDIKKCYLQAVPSNAIRLEIKRFALENEMSFYSPRMQQG 210

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            L  +    S + + +V + +    +D   E  +            +Q    +       
Sbjct: 211 LLRSMIIRLSSTGELMVVIQFFS--EDEKIELLLAHLANHFPEITSLQYCINSKGNDALY 268

Query: 163 DRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
           D+D +     + +      L ++    SF Q N+     + E V      ++GD  + +L
Sbjct: 269 DQDIICYKGQDCIYEEMEGLRFKINAKSFYQTNSKQAQRLYE-VARDFADLKGDELVYDL 327

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           Y G G  +  +A+   RV+ VE    ++  A+ N AAN ++NV       K         
Sbjct: 328 YTGTGTIAQFVAKRAKRVVGVEAVPEAIADAKANAAANGIDNVSFYVGDMKNVFN----- 382

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSI 334
                 +     +     I  DPPR G+    V  +   A   ++Y+SCN  +  RDL++
Sbjct: 383 ------EAFIAANGVPDVIITDPPRDGMHKDVVAQILHIAPAKVVYVSCNSATQARDLAL 436

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +   + + ++   D FP T H+E  VLL ++
Sbjct: 437 MDEQYKVTKVQPVDMFPQTYHVENVVLLEKR 467


>gi|330811210|ref|YP_004355672.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379318|gb|AEA70668.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 456

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 145/371 (39%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--G 55
             ++    +++QLA K   L + +        +            YR RA   +  D   
Sbjct: 99  GCSVQHLPHDEQLALKQRMLAEQLSRVAGVVPEEWAAPLSGPEFGYRRRARVAVRWDQKA 158

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L        +++ + I         +  +M  +   +R     +A L  ++     S 
Sbjct: 159 KKLEVGFRAVGSQDIVAIGDCPVLVQPLQPIMSRLPEMLRRLSKPQA-LGHVELFAGSS- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L +   L +A       L+D     + Q+ L G      +   +  +  RL    
Sbjct: 217 -LAVLLRHMAPLSEA---DLTILKDFCAFHEAQLWLHGEGEPQPVEPGQ-ALGFRLDAWD 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L YR     F Q NAG+N  M+   L        + +L+L+CG GNF+L LA+   +V
Sbjct: 272 LELAYR--PGDFIQVNAGVNEAMIAQALQWLAPQAEERVLDLFCGLGNFALPLAKSVRQV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  VE A  N  +N++NN    +    +             L D +     F  
Sbjct: 330 VAVEGVQTMVERAAANAVSNNLNNTAFFQADLSQ------------PLADAEWIGEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    +       ++Y+SCNP +L RD + ++   + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRKLSSLGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|163782302|ref|ZP_02177300.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882335|gb|EDP75841.1| RNA methyltransferase (TrmA-family) protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 425

 Score =  222 bits (565), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 144/371 (38%), Gaps = 38/371 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L    Y  Q+  K   L + +              I   +   YR+R +F +     
Sbjct: 79  GCQLQHIDYVTQVESKESILVETLQRIGKIKSVPLGEPIQSGQEFGYRVRVQFKV----K 134

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                 F     E + ID        IN L+  +   ++    +R         +   D+
Sbjct: 135 SGKLGFFRWDEHEVVDIDNCPVAHPRINELIPSLKECVKH---IRELQEIHVNYSPSEDK 191

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY--VDERLTVA 174
            +V  +    +D   RE    L++        +  +G  ++ +  L+R +    E L V 
Sbjct: 192 FLVKFVTPTEMD---RELLSNLKEDCLPED--VVGVGDYSRLRTILNRRFWIGKEYLFVE 246

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             +  +R   +SF Q N  I    +E V       +   ++L+CG G F++ L+   + +
Sbjct: 247 VSSWKFRVSADSFFQVNWTIWKSFIEAVSDVKSYRKA--IDLHCGVGFFTIPLSEKGNFI 304

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
              +    ++  A YN   N  +NV  +R  +    ++   E                  
Sbjct: 305 EGSDSNPSAINDAEYNAKLNGRDNVVFMRSDAYRHLKSRGGE--------------VLDL 350

Query: 295 IFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFP 351
           + +DPPRSGL+   + ++      +I+Y+SCNP +L RDL  +L   +T+E++ L D FP
Sbjct: 351 VVLDPPRSGLEKNEMELLVKNKPENIVYVSCNPSTLARDLKTLLRNGYTLEKIRLVDMFP 410

Query: 352 YTRHMECGVLL 362
            T H+E    L
Sbjct: 411 QTYHIESVSFL 421


>gi|332637541|ref|ZP_08416404.1| 23S rRNA (uracil-5-)-methyltransferase [Weissella cibaria KACC
           11862]
          Length = 459

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 143/378 (37%), Gaps = 40/378 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y+ QL  K  +++++  A  +       I    P HYR +    + +    L      ++
Sbjct: 94  YDAQLRLKQQQVQKLYKAVGIDVDVAPTIGMDNPTHYRNKTVVPVKYVDGKLTTGFIKKR 153

Query: 67  T-KERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           T  + + +D +      I+ +            + +      E  +R  + +  Y + + 
Sbjct: 154 TPGDIVPLDDYFVNDEKIDQIIGIVRDILDAHKVSVFDDDTQEGEMRYIMVRRGYYSHEV 213

Query: 115 DQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
              +VT    L     +          ++  +     +   +  +   +     D + ++
Sbjct: 214 MVVLVTQTPTLTDEDAIAADIAAAVSGIKSIILNHNPRSLHVLTSGDNRTLWGADAIHDK 273

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L      + +    NSF Q N      + +      +  + D +++ Y G G   L +A 
Sbjct: 274 LL----DIDFEIGPNSFYQVNPQTTEVLYDMAATKGELKESDTVIDAYSGIGTIGLTVAD 329

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
             D+VL VE+ + +V  A+ N+A N+V N + V   + E  Q  +               
Sbjct: 330 RVDKVLGVEVIERAVIDAQKNVANNNVQNAEFVTADAPEQMQKWKD------------GG 377

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIE-RLA 345
            +   IFVDPPR GL +  +  V        +Y+SCNP+++ RD   L      I+  + 
Sbjct: 378 LKPDVIFVDPPRRGLTEELLDAVADMNPDRFVYVSCNPETMARDARYLIDKGFRIKGDIQ 437

Query: 346 LFDQFPYTRHMECGVLLV 363
             DQFP T H+E   +  
Sbjct: 438 PLDQFPQTAHVEAVAVFE 455


>gi|227873615|ref|ZP_03991853.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268]
 gi|227840533|gb|EEJ50925.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268]
          Length = 422

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 147/411 (35%), Gaps = 62/411 (15%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGD 56
            G    +  YE+++A+K   +R +       N      I   +   YR + EF       
Sbjct: 29  GGCFYQEIPYEEEVAKKEREIRDLFDPVIQGNYLFEGIISSPKKEAYRNKMEFSFGDQEK 88

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI--------------RLEPLLRA 102
           D    +   Q +    I       L    +   ++AT               R E  LR 
Sbjct: 89  DGPLCLGLHQKRSFFNILNTEDCRLPHPDMGEILLATRLYFQEKSLRYYHKKRHEGYLRH 148

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----RL-------------RDALHA 144
            L +      ++ + +++L++   L     E  +     RL                LH 
Sbjct: 149 LLIR---RAEKTGEILLSLVHSTQLPAEEEEKILSGWRDRLLSLEKEGKLEGSYAGILHT 205

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
           +   +      + T+    +DY  E L      L ++    SF Q N      +   V  
Sbjct: 206 KNDSLADAVINDGTETLFGKDYFYEELL----GLNFKITPFSFFQTNTLGAEKLYAKVQE 261

Query: 205 -----ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                     +  + +LY G G  + ++++   + + VEI + +VEAA+ N   N V N 
Sbjct: 262 YSSFSENAEEKPVIYDLYSGTGTITQLMSKVAKQAIGVEIVEEAVEAAKENAKENKVENC 321

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PH 317
                   +  +A +   E                I VDPPR G+    +  + +Y    
Sbjct: 322 IFYAGDVLKVLEAGQGATELPY----------PDFIIVDPPRDGMHKKALEKIISYGVKR 371

Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           ++Y++C P SL RDL  L    + +++L   D FP T + E   LL ++ S
Sbjct: 372 LVYVACKPKSLARDLEALQNAGYKVQKLCAVDMFPRTNNCEVVALLEKEES 422


>gi|308048558|ref|YP_003912124.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799]
 gi|307630748|gb|ADN75050.1| RNA methyltransferase, TrmA family [Ferrimonas balearica DSM 9799]
          Length = 447

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 138/367 (37%), Gaps = 45/367 (12%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           Q   K   L Q++        +           HYR RA     +D  +L      + + 
Sbjct: 102 QRDLKQQALAQVVSKLSGLTPEQWAEPLLGPDWHYRRRARLGCRYDAGELVLGFRQEGSN 161

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
               ID+    +  ++ L+  +   +    L R        L S+    +V L+  R L 
Sbjct: 162 RLTAIDHCPVLAEPLSELITPLQQLLAPLKLARHVGHLDLMLASEGPVVVVRLL--RPLR 219

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ------ 182
           +  RE                   G++   ++ +  D + +    A   L Y        
Sbjct: 220 EEEREALAAF--------------GQSRGVQMLIQGDALTDLSGQAVAPLHYDIGEGRPQ 265

Query: 183 ---IENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVE 238
              +   F Q N  +N  M+   +   +   G+  L+L+CG GNF+L LA     ++ VE
Sbjct: 266 PAFLPGDFFQVNGVVNQAMISQAIEWLQPQPGEKGLDLFCGGGNFTLALAGQSAEIIGVE 325

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                VE AR   A   +  ++       E+        +   LKD+D        + +D
Sbjct: 326 GVPAMVERARARAAELGLEQLRF------EYADLNGEAPKAQWLKDVDW-------VLLD 372

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHM 356
           P R+G       + +  P  ILY++CNP SL RD  +L+   + + RL L D FP+T H+
Sbjct: 373 PARAGAPGVMEWLAKLRPSRILYVACNPASLGRDGKVLAQQGYRLSRLGLVDMFPHTHHL 432

Query: 357 ECGVLLV 363
           E   L  
Sbjct: 433 ESMALFE 439


>gi|299143365|ref|ZP_07036445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517850|gb|EFI41589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 444

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 93/394 (23%), Positives = 151/394 (38%), Gaps = 53/394 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPIH--YRMRAEFHI---WHD 54
             T     YE +L  K + + ++      +   L+ F S P+H  YR + E+     + D
Sbjct: 75  GCTYQTMSYECELEYKKNLITKLFKENDIEFEKLE-FISSPVHKAYRNKMEYTFSDEYKD 133

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL---LINALMIE-------MMATIRLEPLLRAKL 104
           G     +    +  E +  D     +    +I    +E           +R   +LR  L
Sbjct: 134 GPLSLGLHKKNRFYEVVNTDECNIVNEDFNIIRKFTLEYFKDKLKPYNRMRHTGILRHLL 193

Query: 105 FQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIRL------RDALHARKYQIQLIGRAN 156
            +     S   + +V L+        D + E  ++L         +H             
Sbjct: 194 IR----RSSIGEVLVNLVTASSDFNFDEYFEELLKLGLSGKVVGIMHTINDSFSDAIVPE 249

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215
           K       DY++E L      L ++    SF Q N      +          +    LL+
Sbjct: 250 KIIQYYGVDYINEELL----GLKFKVSCFSFFQTNTESAKVLYTLASNMLGDLDNKILLD 305

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G  + +L R     L +EI K +VE+AR N   N++NNVK +     +  + +  
Sbjct: 306 LYSGTGTITQILGRKAKSALGIEIVKDAVESARKNAEINNLNNVKFICDDVFKAVKEL-- 363

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333
                         Y+   I +DPPR G++   +  + ++     LYISCNP +  RDL 
Sbjct: 364 -------------EYKADVIVLDPPREGINPKAIDKIISFRPEKFLYISCNPITFVRDLK 410

Query: 334 I-LSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           I L + + I  L   DQFP T H+E   LL R+ 
Sbjct: 411 IFLESGYEIIELKALDQFPRTNHIEIISLLSRQN 444


>gi|212224662|ref|YP_002307898.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009619|gb|ACJ17001.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 419

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 145/375 (38%), Gaps = 42/375 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
              L    Y++QL  K D+L +++  F   ++++  S     +R R +  I  +G     
Sbjct: 73  GCLLQHLPYDEQLKFKSDKLSEIL-GF---DVEVIPSPKIYGHRNRIDVVISTNGIGFRR 128

Query: 61  IMFDQQTKERMRIDYFMPGS--------LLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                   +      F   S          I      +    +    LR  + +    T 
Sbjct: 129 RGTWWDVVDIEECPVFGKASGKVLRSLREFIEDHKPSLYEIGKNRGFLRYVVIREGKFTD 188

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
           +    +VT      L + + +          +       +   +  ++   ++++ ERL 
Sbjct: 189 ELMVNLVTAEGE--LPEEFPDYFDYADSIYWSVNRTPSDVSYGDVERV-WKKEFIRERL- 244

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                + Y    NSF Q N+   V+++  V    +G +  +L+LY G G F + LA+   
Sbjct: 245 ---DDVAYLIHPNSFFQTNSYQAVNLVREVSRLVEGEK--VLDLYSGVGTFGVYLAKRGF 299

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V  +EI   +VE A  N   N ++ V       K+                   +  ++
Sbjct: 300 TVEGIEINPFAVEMANRNAELNGIDAV-FSVGEDKDV-----------------KNLAKY 341

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
            TI +DPPR+GL    V  +       I+Y+SCNP +L  +L+ LS  +++E     D F
Sbjct: 342 DTIILDPPRAGLHPKLVKKILKDEPQTIVYVSCNPKTLKLNLNELSGKYSVEEAVGLDMF 401

Query: 351 PYTRHMECGVLLVRK 365
           P+T H+E  V L  K
Sbjct: 402 PHTPHIEVVVKLKHK 416


>gi|50086080|ref|YP_047590.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter sp. ADP1]
 gi|90126208|sp|Q6F847|RUMA_ACIAD RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|49532056|emb|CAG69768.1| 23S rRNA (Uracil-5-)-methyltransferase(23S
           rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp.
           ADP1]
          Length = 463

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 156/367 (42%), Gaps = 31/367 (8%)

Query: 12  QQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-- 65
           QQ+  K   L   +  F        L   RS    YR RA   + +       IM  +  
Sbjct: 108 QQIQIKQHVLASHLQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREH 167

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            +     I         ++  + E+   +    + +A++  I+      + +++     R
Sbjct: 168 GSNRLTPIQSCAVLDQRLSQALPELYDVLNRL-VAKAEIGHIELAMGDDEVSLLV----R 222

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--VAGRTLIYRQI 183
            L+        +L D    + +Q+ L  + + +   +DR   + RL   V    L +   
Sbjct: 223 HLNTLPDSDITQLCDYAQHKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFS 282

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEI 239
              FTQ NA +N  ML+      K  +G+ +L+L+CG GNFSL LAR      RV+ VE 
Sbjct: 283 PLDFTQVNATVNQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEG 342

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           ++  V+ A  N A N ++NV+     S++ T+        N+          F  + +DP
Sbjct: 343 SEEMVQRAFENAAQNALHNVEFY---SQDLTKDFSHHSWANQ---------GFDALLIDP 390

Query: 300 PRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           PRSG  +    +       I+Y+SCNP +L RD  +L+   + ++++ + D F +T H+E
Sbjct: 391 PRSGAFEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHVE 450

Query: 358 CGVLLVR 364
              L  +
Sbjct: 451 SIALFEK 457


>gi|261253890|ref|ZP_05946463.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio orientalis CIP
           102891]
 gi|260937281|gb|EEX93270.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio orientalis CIP
           102891]
          Length = 439

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 158/371 (42%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58
              +     E Q   K   L Q+M  F    +++      +   YR RA   +  +    
Sbjct: 90  GCNMQHLAIEPQQEHKQQTLGQLMSKFAGQRIKLEAPVVGDSKGYRRRARVSLKLNKKTR 149

Query: 59  Y--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                   +Q+K+ + + +       ++AL+  +   +  E   +  L  ++ +   + +
Sbjct: 150 QLEFGFRKKQSKDIVTVTHCPVLDRDLDALLAPL-HQLLSEFSNQESLGHVELVKGDNTK 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            IV L + + L ++ ++    L          + L+  +++    +         + AG 
Sbjct: 209 VIV-LRHLKALQESEQQGLETLAK---QHNATLYLMPESDQLNRVVGESA---NYSEAGV 261

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
           T+ +    N+F Q N  +N  M+   L   +  + D +L+L+CG GNFSL +A+   +V+
Sbjct: 262 TIPFE--PNNFIQVNQKVNQSMVAQALDWLELDEHDCVLDLFCGLGNFSLPMAQKVKQVI 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE     V+ A+ N   N ++N    + + ++        +E            +F  I
Sbjct: 320 GVEGVDAMVDKAQDNATVNGISNAAFHQANLEQDFSGQLWAQE------------KFDKI 367

Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
            +DP R+G       + Q     ++Y+SCNP +L RD  S+L+  + +++L + D FP+T
Sbjct: 368 LLDPARAGASGIIEHISQLGASRVVYVSCNPATLARDSQSLLNQGYKLQKLGMLDMFPHT 427

Query: 354 RHMECGVLLVR 364
            H+E   L V+
Sbjct: 428 SHLESMALFVK 438


>gi|57642070|ref|YP_184548.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
 gi|57160394|dbj|BAD86324.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
          Length = 417

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 142/375 (37%), Gaps = 44/375 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
              L    YE+Q+  K ++    +  +   ++ +  S     +R R +  I   G     
Sbjct: 74  GCLLQHLPYEKQIEFKSEK----LSRYIGTDVDVIPSPVIYGHRNRIDVVISTGGIGFRR 129

Query: 61  IMFDQQTKERMRIDYFMPGSLL--------INALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                   +      F   S          I      +    +    LR  + +    T 
Sbjct: 130 YGTWWDAVDIEECPVFGKTSRKVLKSLREFIEDEKPTLYEIRKNAGFLRYIVMREGKFTG 189

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
           +    +VT      L +++ E          +       +   +  +      ++ E+L 
Sbjct: 190 ELMVNLVT--SEGKLPESFPEYFPYATSIYWSVNRTESDVSYGDVER-YWGEPFIREKL- 245

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                + Y    NSF Q N+   V+++  V    +G +  +L+LY G G F + LA+   
Sbjct: 246 ---DDVTYLIHPNSFFQTNSYQAVNLVRKVAELVEGEK--VLDLYSGVGTFGIYLAKRGF 300

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-R 291
           +V  +EI   +VE A+ N   N V+                    EF   +D D++S   
Sbjct: 301 KVEGIEINPFAVEMAKKNAQINGVD-------------------AEFRVGEDKDVNSLSE 341

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349
           + T+ VDPPR+GL    V  +       ++Y+SCNP +L ++L  LS  + IE     D 
Sbjct: 342 YDTVVVDPPRAGLHPKLVRKILKDRPETLVYVSCNPKTLSQNLKELSEGYKIEEAVGLDM 401

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E  + L +
Sbjct: 402 FPHTPHVEAVLKLRK 416


>gi|255994151|ref|ZP_05427286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum
           ATCC 49989]
 gi|255993819|gb|EEU03908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum
           ATCC 49989]
          Length = 399

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 146/392 (37%), Gaps = 50/392 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIW---HDGDDLYHI 61
            YE QL  K + ++ ++    +    +      P    YR + EF       +G+     
Sbjct: 24  SYE-QLKIKDELVKTLIDKKGLKVDTLLPIEKSPNMYRYRNKMEFTFGNSEREGELKLGF 82

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYL 110
                 +  + I          N ++  +                    LR  + +    
Sbjct: 83  HEKGNYRNIVDIHSCQLVDTDYNEILNAVRQFAFQNNYDFYNKKKHNGFLRHLVIRSGIR 142

Query: 111 TSQSDQAIVTLIYHRLLDDAWR--------ECAIRLRDALHARKYQIQLIGRANKTKICL 162
           TS+    +VT        +           +    L   LH    +IQ        +I  
Sbjct: 143 TSEIIVNLVTSSSDLANFNTESFVNLLTSLKLNNELVGILHTVNDKIQDTANGEDIRILY 202

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
            RDY  ER+      L ++    SF Q N     ++  + + +   +Q  ++ +L+CG G
Sbjct: 203 GRDYYMERIM----DLDFKVRMGSFFQTNVQAAENLYRYAINSIDNVQDKVIFDLFCGTG 258

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  LA    +V+ V+I+  ++++A  N   N +NNV   R    E  + +        
Sbjct: 259 TITQSLAGAAKKVIGVDISDDAIKSAIENTKLNKINNVSFYRGDVFEVIRNINE------ 312

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILS-TT 338
                    +   I +DPPR+G++   +  +V+  P  I+YISCNP +L  +L       
Sbjct: 313 ---------KPDVIVLDPPRAGVNAKALEKIVEFSPREIVYISCNPKTLIDNLYFFEYNR 363

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           + I+ L  FD F +T H+E   LL +  +  H
Sbjct: 364 YNIKSLKAFDNFFFTSHVEAVALLSKLNTDKH 395


>gi|257126196|ref|YP_003164310.1| (uracil-5)-methyltransferase [Leptotrichia buccalis C-1013-b]
 gi|257050135|gb|ACV39319.1| (Uracil-5)-methyltransferase [Leptotrichia buccalis C-1013-b]
          Length = 476

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 71/395 (17%), Positives = 144/395 (36%), Gaps = 56/395 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMF 63
           Y++QL  K + +++ +        +    +   +P  YR + EF   +   G  +   + 
Sbjct: 95  YDEQLEIKTEHIKKELDRIIKYDYIFEEPVRSVKPDKYRNKMEFSFGNAAKGGPIILGLH 154

Query: 64  DQQT-KERMRID-----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
            Q +  + + +D            ++  +        +    +      R  + +    T
Sbjct: 155 KQNSFHDIVEVDGLKLMDDNFNKIYVFCNEFCKKTGFDFYHRLDHIGFFRNLVIRKAEFT 214

Query: 112 SQSDQAIVTLIYHRLLDDAWRE-------------CAIRLRDALHARKYQIQLIGRANKT 158
            Q    IVT      ++    +                ++   LH        +  +   
Sbjct: 215 KQILVNIVTTTQISEMEKEKFQKEFKEGLLALNLDDNFKITGILHTFNDNFSDMVISESE 274

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ------GD 212
            I     Y +  LT     L ++    SF Q N+     +   VL   + I+        
Sbjct: 275 TIL----YGERDLTEEIFGLKFKISPYSFFQTNSQTVEKLYGKVLTYLEEIENIKIDEAT 330

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G    ++++   +V  +E+   +VE A  N   N++ N   +          
Sbjct: 331 VFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDV------ 384

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                 F +L + D    +   + +DPPR+G+ + T+  +  Y   +I+Y+SCNP +L  
Sbjct: 385 ------FAKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKTLMT 438

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL       + + R ++ D FP T H+E   LL +
Sbjct: 439 DLIKFGEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473


>gi|312880126|ref|ZP_07739926.1| RNA methyltransferase, TrmA family [Aminomonas paucivorans DSM
           12260]
 gi|310783417|gb|EFQ23815.1| RNA methyltransferase, TrmA family [Aminomonas paucivorans DSM
           12260]
          Length = 458

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 139/394 (35%), Gaps = 50/394 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHI-WHDG 55
              L    Y  QL  K + LR  +              +     + YR +    + W   
Sbjct: 82  GCQLQHASYPFQLRAKEEALRDALRRLGGLDDSAVEPCVPSPRVLGYRNKVVLPVRWTPE 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL-------------LINALMIEMMATIRLEPLLRA 102
                  + +++ + + +    P                L + ++       R    LR 
Sbjct: 142 GGSALGFYQRRSHQVVPLVSGCPVLEERLHSLLSLALPFLKDPILQPYREGTRPSGFLRE 201

Query: 103 KLFQIDYLTSQSDQAIVTL-IYHRLLDDAWRECAIRLRDALHA-------RKYQIQLIGR 154
            + +    T +S   +V      R  +   +     L + L            Q      
Sbjct: 202 VVARCGSRTGESALCLVVRRTPERREETFLKALHHHLSETLPGFRGTALHIAPQPGNFIW 261

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDL 213
           +  T+  L    + E L      + +     SF Q N+     + E VL    +  QG L
Sbjct: 262 SGTTRPFLGATDLHESLGPYR--IRFEVS--SFFQVNSLQAELLYEDVLESLGEEAQGHL 317

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQA 272
           LELY G G+ SL LA     V AVE   P+ E+ + N AA+ +   + ++   +++  + 
Sbjct: 318 LELYSGVGSLSLFLASRARSVQAVEEWLPATESLQANAAAHGLEQRLSVLSGKAEDVLEK 377

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
           + R+               F  + +DPPR G     +  +       ++Y+SCNP +L R
Sbjct: 378 LARD--------------SFDGVVLDPPRGGCHPKVLERILDLDPKKVVYVSCNPATLAR 423

Query: 331 DLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           DL IL      I  L  FD FP T H+E   LL 
Sbjct: 424 DLRILVDGGFRIRSLRPFDLFPQTAHVETRALLT 457


>gi|225574546|ref|ZP_03783156.1| hypothetical protein RUMHYD_02623 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038233|gb|EEG48479.1| hypothetical protein RUMHYD_02623 [Blautia hydrogenotrophica DSM
           10507]
          Length = 452

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 149/393 (37%), Gaps = 48/393 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSE-PIHYRMRAEFHIW---H 53
            G +     YE+QL  K  ++++++    +   +   I+ S    HYR + EF       
Sbjct: 79  GGCMYQTMPYEEQLKMKQAQVKEILDRAVLGEYEYENIYGSPQEFHYRNKMEFSFGDAEK 138

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-----------LLRA 102
           DG     +     T + +           +  ++  +    R               LR 
Sbjct: 139 DGPLTLGLHKKGSTYDVLTAGDCQLVHQDMTKILTCVWEYFRDRKVSYYKKMQHMGYLRH 198

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRL-LDDAWREC-----AIRLRDALHARKYQIQLIGRAN 156
            L +    T +    +VT       L    +E        ++   +H     +  + +++
Sbjct: 199 LLLRRGTTTGEILVHLVTTSQEEHDLTPLKQELLGLGLEGKIVGIMHIINDSLSDVVKSD 258

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
           +T+I   +DY  E L      L ++    SF QPN      +   V +     +  ++ +
Sbjct: 259 ETRILYGQDYFYETLM----GLKFKISTFSFFQPNTLAAEVLYNIVRSYVGETKDKVVFD 314

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G  S +LA     V+ VEI + +VEAAR N   N + N + +             
Sbjct: 315 LYSGTGTISQILAEVSKEVVGVEIVEEAVEAARENARMNGLKNCRFIAGDV--------- 365

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
                 L+ +D    +   I +DPPR G+    +  +       I+YISC   SL RDL 
Sbjct: 366 ------LRVLDELEEKPDMIVLDPPRDGIHPKALPKILDYGVDRIVYISCKVTSLARDLE 419

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           +     + +E+    DQF  T H+E   LL RK
Sbjct: 420 LFQERGYRVEKCTAVDQFCQTVHVETICLLERK 452


>gi|15838949|ref|NP_299637.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa
           9a5c]
 gi|20140309|sp|Q9PAY7|RUMA_XYLFA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|9107532|gb|AAF85157.1|AE004045_15 RNA methyltransferase [Xylella fastidiosa 9a5c]
          Length = 443

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 136/373 (36%), Gaps = 27/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L     + Q+  K   L + +      + +       +E   YR +  F +      
Sbjct: 87  GCVLQHLAEDAQVVSKQRVLLESLERIGRVSPERVLPALAAESWGYRRKGRFSVRWVEKK 146

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINAL--MIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              ++   +  +   +        ++  +   I ++AT+      R  + QI+++   + 
Sbjct: 147 GRTLV-GFREHDPRFVADVSVCHTVVPQVGEKIALLATLLNSLDGRRDVPQIEFIAGDA- 204

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V  +  R L        + L +        I L     ++   L  D V     +  
Sbjct: 205 ---VVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKP 261

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             + +      F Q N G+N  M+   L     G    +L+L+CG GNF+L LAR  D V
Sbjct: 262 WDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVDEV 321

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE AR N   N + N +                      +D       F  
Sbjct: 322 VGVEGDIGLVERARENARRNGLGNAEFFVADLT------------RDQRDAPWMRQGFDK 369

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L       +  +   D FP
Sbjct: 370 LLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFP 429

Query: 352 YTRHMECGVLLVR 364
           +T H+E   +  R
Sbjct: 430 HTAHVESIAVFDR 442


>gi|313905584|ref|ZP_07838946.1| Methyltransferase type 11 [Eubacterium cellulosolvens 6]
 gi|313469531|gb|EFR64871.1| Methyltransferase type 11 [Eubacterium cellulosolvens 6]
          Length = 570

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/409 (21%), Positives = 144/409 (35%), Gaps = 80/409 (19%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPI--HYRMRAEFHIW---HDGDDLYHIMFDQQTKE 69
           A K + ++  ++       +  +  P+   YR + E+       DG     +     T +
Sbjct: 155 AYKEEAVKTSVVPDYT--FEGVKGSPVNNGYRNKMEYSFGDDQKDGPLTLGLHKKASTYD 212

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKLFQIDYLTSQSDQAI 118
            +  D         N ++  ++     +             LR  L +   +T +    +
Sbjct: 213 ILTADDCQIVHEDFNRILRCVLDFCTEKNWPYLRKMTHVGYLRHLLVRRAVMTGEILVDL 272

Query: 119 VTLIYH----------RLLDDAWR-----------------------------ECAIRLR 139
           VT   +          + L                                  E    + 
Sbjct: 273 VTTSQYEMDLSEGNPRKQLTGEEMSRTREMRTEESLTAEQGDLMELTARIQALELEGEIT 332

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH     +  + + + T I   RDY  E L      L ++    SF Q N+     + 
Sbjct: 333 GILHTVNDSLADVVQNDHTDILAGRDYFYEELL----GLKFKITPFSFFQTNSKGAEVLY 388

Query: 200 EWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
                    I    + +LY G G  + +LA     V+ VEI + +VEAA+ N A N ++N
Sbjct: 389 RTAREFLGDIDNQTVFDLYSGTGTIAQMLAPVAKNVVGVEIVEEAVEAAKENAALNGLDN 448

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--P 316
            + +                   LK +D  + +  TI +DPPR G+    +  + AY   
Sbjct: 449 CRFIAGDV---------------LKVLDELTEKPDTIVLDPPRDGIHPKALPKIVAYGVE 493

Query: 317 HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            I+YISC P SL RDL   L   + +ER+   D FP T H+E   LL R
Sbjct: 494 KIIYISCKPSSLARDLPYFLRHGYRLERMCCVDMFPGTVHVEVVSLLQR 542


>gi|195020688|ref|XP_001985248.1| GH16956 [Drosophila grimshawi]
 gi|193898730|gb|EDV97596.1| GH16956 [Drosophila grimshawi]
          Length = 613

 Score =  221 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 159/423 (37%), Gaps = 68/423 (16%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNLQIFR-----SEP--IHYRM 45
             L    YEQQL +K + +  ++  +            P+L  F+       P    YR 
Sbjct: 160 CPLAEMPYEQQLEQKTEEMSALLKKYTQELRRLNADAKPHLDKFQFNGVLPSPIVQGYRN 219

Query: 46  RAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMIEMMATIRLE 97
           + EF +  + +    + F   +         E  ++ +    +        +++   + +
Sbjct: 220 KNEFTVGKNAEGEIVVGFRLGSYSDGSVEVAEVQQLPHLPAQAKWAAQSFQQLVRQSKFQ 279

Query: 98  PLL------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR-ECAIRLRDALHARKYQIQ 150
           P          +   +   ++  +  +V  IY   L +A + E    L++     +   +
Sbjct: 280 PFNPVGNVGHFRQLMVRSSSATGELMLVAGIYSSNLSEAEQLELQQELKNFYEQAEQNAE 339

Query: 151 LIGRA---------------NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
               +               N     L   ++ + +    + L +R    +F Q N    
Sbjct: 340 HKCTSLYYQDVKHREAGQMVNPVTHLLGSTHITDTI----QELQFRISPLAFFQINTAGA 395

Query: 196 VHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             + +  +  A       +L++ CG G  +L  ARH  +VL VEI   +++ A YN +AN
Sbjct: 396 NVLYQQAIDLAAPSKDTTMLDICCGTGTIALAFARHCKQVLGVEIVPDAIKDAEYNASAN 455

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ- 313
            + N K    ++ +F ++M RE  + +     +         VDPPR+GL + ++  ++ 
Sbjct: 456 GITNCKFFAGNADDFIKSMVREALYGQEPGKPVDL----IAVVDPPRAGLHNRSIAAIRS 511

Query: 314 --AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLL 362
             A   ++Y+SCNP S  R+   L               +     D FP+T H E  +L 
Sbjct: 512 ASAIKRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYSKSAVAVDMFPHTTHTELVILF 571

Query: 363 VRK 365
            R+
Sbjct: 572 ERE 574


>gi|254523364|ref|ZP_05135419.1| 23S rRNA (uracil-5-)-methyltransferase [Stenotrophomonas sp. SKA14]
 gi|219720955|gb|EED39480.1| 23S rRNA (uracil-5-)-methyltransferase [Stenotrophomonas sp. SKA14]
          Length = 444

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 138/377 (36%), Gaps = 33/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              L      QQ+  K   L   +                 E   YR +  F +      
Sbjct: 88  GCVLQHLDEGQQIVAKQRVLMDNLERIGHVKPGTVLAPLVGESWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +Q  +    +   +     I    +E ++        +  + QI+++    D
Sbjct: 148 DKTLVGFREQDPRFVADLSQCLTVIPEI-GTKVEALSLFIESLDGKRDIPQIEFIAG--D 204

Query: 116 QAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--ERLT 172
           QA+V  + H + L DA R              + I L      T   L+   V    RL 
Sbjct: 205 QAVVLTVRHLQPLSDADRASWAAFGQ---QHGFVIYLQSGGVDTVQPLEGQGVPLSFRLA 261

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
                L +R     F Q NA +N  M+   L     G    +L+L+CG GNF+L LAR  
Sbjct: 262 PWDVELAFR--PLDFIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRV 319

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE     V  AR N   N + N +     S + TQ  R      +          
Sbjct: 320 REVVGVEGDAGLVARARENAERNGLANAQFF---SADLTQDQRSTAWMRQ---------G 367

Query: 292 FKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348
           F  + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D
Sbjct: 368 FDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMD 427

Query: 349 QFPYTRHMECGVLLVRK 365
            FP+T H+E   +  ++
Sbjct: 428 MFPHTAHVESIAVFEKR 444


>gi|308798929|ref|XP_003074244.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri]
 gi|116000416|emb|CAL50096.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri]
          Length = 1009

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 79/434 (18%), Positives = 145/434 (33%), Gaps = 84/434 (19%)

Query: 2    SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
                    YE Q   K   +R+ +           + +  +   E   YR + EF    D
Sbjct: 586  GCAWQHVDYETQRERKGRTVREALTRVGRFVDGDDLTSACVGTKETTRYRNKMEFAFGSD 645

Query: 55   G-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-PLLRAKLFQIDYLTS 112
                +   +  + T + +    F  G LL +    ++++ +R     +R ++   D  T 
Sbjct: 646  ASGGVVVGLRPRGTNDSIVDLEF--GCLLQSEAADDVLSAVRASLKRVRGRIDAFDRTTG 703

Query: 113  QS-------------------DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153
            +                       + T    + L        I       A    +    
Sbjct: 704  KGTLRSVTIRTATSGDGKRSLMVDLATTASEKELTSGALAELIADITKHEAVTSVVHTTV 763

Query: 154  RA-------------------------NKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
             A                          K       + + E L      + +     SF 
Sbjct: 764  PAEAELRRAGVGRSAKFVKGGKKPISKRKVVTLYGENKIVETLH----GVKFELSSASFF 819

Query: 189  QPNAGINVHMLEWVLAATK---GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            Q N      ++  V+A           +L+L+CG G   L +A +  RV+  E+   +VE
Sbjct: 820  QTNTEQAARLVREVVAGCGFAGDRSETVLDLFCGVGTMGLSVASNAKRVIGWEVVPEAVE 879

Query: 246  AARYNIAANHVNNVKIVRMSSKEF-----TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             AR N   N + N    R+          T+A+    + + L   DI       +  DP 
Sbjct: 880  DARRNAEINGITNADFYRVDLSRLNPSKGTKALLTTPQGDVLPMPDI-------VITDPA 932

Query: 301  RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--------HTIERLALFDQF 350
            R G+D + + +++      I+Y+SCNP +  RDL++++          + ++     D F
Sbjct: 933  RPGMDASLIAILRTIGARRIVYVSCNPATQARDLALITAPSQGSQDAAYVLKLCTPVDMF 992

Query: 351  PYTRHMECGVLLVR 364
            P+T H+E   +L R
Sbjct: 993  PHTAHVESVAVLDR 1006


>gi|160903249|ref|YP_001568830.1| RNA methyltransferase [Petrotoga mobilis SJ95]
 gi|160360893|gb|ABX32507.1| RNA methyltransferase, TrmA family [Petrotoga mobilis SJ95]
          Length = 446

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 157/389 (40%), Gaps = 46/389 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEP-IHYRMRAEFHIWHDG 55
            G   +D  Y+ QL  K + +++ +      +      I  S+    YR R E+    + 
Sbjct: 77  GGCQWLDYDYKSQLKSKTEIVKEQLERIGKLDSSVVNDIIESDLIWGYRNRMEYTF-QEN 135

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKL 104
           + L   +    +   + I                   L+N L IE+      + +L+  +
Sbjct: 136 NKLKLGLNIANSNNVLDIYSCPISPNLFDNIRNKFRELVNKLNIEIYDKKTKKGILKHLV 195

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR---DALHARKYQIQLIGRANKTKIC 161
            +  +  +Q+   IVT   +   ++  ++   +       +H       ++ R    K  
Sbjct: 196 IRRSFSKNQTMVIIVTNTEYLPYEEEIKQFFQQNFHPYSLIHLMNSSDSVVLRGP-YKTL 254

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYC 218
           L    ++E          ++    SF Q N  +   +L  +L   K        +L+LY 
Sbjct: 255 LGEGVLNEEF----DDFKFQIPPTSFFQNNYNVTQKLLRHILEYFKSNAQKDATMLDLYS 310

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G FS+  +  F  + +VE +K SV+AA  N   N   NV  +  SSK +         
Sbjct: 311 GVGLFSIYFSPLFKHIESVETSKVSVKAAIANSHINFTKNVNFILASSKPYL-------- 362

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS 336
                 +   S RF  + +DPPR GL+   + ++ +     I+Y+SC+P +  RDL++ +
Sbjct: 363 ------MKNSSKRFDYVILDPPRKGLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFT 416

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLVR 364
               T++ +  FD FP++ H+E   +L +
Sbjct: 417 KNGFTLKSVQPFDMFPHSYHIENVGILEK 445


>gi|28199269|ref|NP_779583.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa
           Temecula1]
 gi|32130010|sp|Q87BR3|RUMA_XYLFT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|28057375|gb|AAO29232.1| RNA methyltransferase [Xylella fastidiosa Temecula1]
 gi|307578259|gb|ADN62228.1| 23S rRNA 5-methyluridine methyltransferase [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 443

 Score =  221 bits (563), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 135/373 (36%), Gaps = 27/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L     + Q+  K   L + +      + +       +E   YR +  F +      
Sbjct: 87  GCVLQHLAEDAQVVSKQRVLLESLERIGCVSPERVLPALAAESWGYRRKGRFSVRWVEKK 146

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINAL--MIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              ++   +  +   +        ++  +   I ++AT+      R  + QI+++   + 
Sbjct: 147 GRTLV-GFREHDPRFVADVSVCHTVVPQVGEKIALLATLLDSLDGRCDVPQIEFIAGDA- 204

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V  +  R L        + L +        I L     ++   L  D V     +  
Sbjct: 205 ---VVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKP 261

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             + +      F Q N G+N  M+   L     G    +L+L+CG GNF+L LAR    V
Sbjct: 262 WDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEV 321

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE AR N   N + N +                      +D       F  
Sbjct: 322 VGVEGDIGLVERARENARRNGLGNAEFFVADLT------------RDQRDAPWMRQGFDK 369

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L       +  +   D FP
Sbjct: 370 LLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFP 429

Query: 352 YTRHMECGVLLVR 364
           +T H+E   +  R
Sbjct: 430 HTAHVESIAVFDR 442


>gi|291459844|ref|ZP_06599234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417634|gb|EFE91353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 466

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/444 (18%), Positives = 146/444 (32%), Gaps = 88/444 (19%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSE-PIHYRMRAEFHIW---- 52
            G       YE+QLA K   +R+++L   +       I  S     YR + EF       
Sbjct: 24  GGCFYQGVPYEEQLAIKEREIRELLLPAALGEYRFENILPSPKESAYRNKMEFSFGDQEK 83

Query: 53  --------HDGDDLYHI------------------------------MFDQQTKER---- 70
                   H     ++I                               + +++       
Sbjct: 84  GGPLCLGLHQKRSFFNILNADDCRLPDPDFGVLLRLTREYFASLSIDYYHKKSHGGYLRH 143

Query: 71  -----------MRID-----YFMPGSL--LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                      + +D      F  G+   L    +  +   +   P  +        ++ 
Sbjct: 144 LLIRRAVKTGEILVDLVSSSDFPKGAEPALSPGAVPSIREEVGGAPEKKDVKEDGSGISD 203

Query: 113 QSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            +++ ++      LL  +   +   R+R  LH R   +        T+I    D++ E L
Sbjct: 204 AAEREMLLGWSALLLRAEEEGKLRGRIRGILHTRNDALSDAVIDEGTEILWGEDFICEEL 263

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHML-----EWVLAATKGIQGD---LLELYCGNGNF 223
                 L +R    SF Q N+     +         L+   G  G    + +LY G G  
Sbjct: 264 L----GLRFRISPFSFFQTNSLGAEKLYSKIRDYAALSLPAGRGGQKPVIYDLYSGTGTI 319

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           + +++      + +E+   +V AAR N   N + N            + +    E  R  
Sbjct: 320 TQLMSLAASLSIGIELVPEAVRAARENARDNGITNCAFFAGD---VLKVISEGEELIRED 376

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHT 340
                +     I +DPPR G+    +  + AY  P ++Y++C P S  RDL  L    + 
Sbjct: 377 GSRYPAPHPDLIILDPPRDGIHPKALRKIIAYASPALIYVACKPKSFARDLLPLQEAGYR 436

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           ++     D FP T + E   LL +
Sbjct: 437 LQSCCPVDMFPQTNNCELVALLSK 460


>gi|256544972|ref|ZP_05472341.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus vaginalis
           ATCC 51170]
 gi|256399339|gb|EEU12947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus vaginalis
           ATCC 51170]
          Length = 455

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 154/396 (38%), Gaps = 55/396 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEP-IHYRMRAEFHI---WHDG 55
             +     YE +L  K D +++++      + +L I RS     YR + E+     + DG
Sbjct: 81  GCSYQKMGYETELLLKYDMIKKLLKNSHIDIADLSIIRSPKIKEYRNKMEYTFGDSYKDG 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGS---LLINALMIEMMATIRLE--------PLLRAKL 104
             +  +    +  E +  D           I   + +                 LLR  +
Sbjct: 141 PLVLGLHRQNRFYEIVDTDGCNIVDSDFETIRKHVQKYFREKNTSFYHKKAHTGLLRNLI 200

Query: 105 FQIDYLTSQSDQAIVT------------LIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
            +    T +    +VT            L  H LL+   +    R+    H     +   
Sbjct: 201 VRKALHTGEIMVVLVTSSDKSFDPMRRDLFAHNLLNAKTK---GRIVSIYHVINDSLSDA 257

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQG 211
            + +  ++   + Y++E++      L ++    SF QPN      + +  +  A      
Sbjct: 258 VKVDSIELLFGKKYIEEKM----NDLKFQISPFSFFQPNVYTAEKIYQKAIELANVDKNK 313

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++L+LY G G  + + A+  ++ + +EI + +VE A  N   N + N+  +         
Sbjct: 314 NVLDLYSGTGTITQLFAKSANKAMGIEIIEEAVEKAFDNAKENEIENINFIAGDV----- 368

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLC 329
                     L+ ID+   ++  + +DPPR G+    +  +   +    +YISCNP +  
Sbjct: 369 ----------LEKIDLVKGKYDIVVIDPPREGIHPKAIKKIIDISPEEFVYISCNPKTQV 418

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           RDL I     + I++   FDQFP +RH+E   L+ +
Sbjct: 419 RDLEIFIKNGYKIKKYQAFDQFPRSRHVETIALIQK 454


>gi|293390947|ref|ZP_06635281.1| RNA methyltransferase [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951481|gb|EFE01600.1| RNA methyltransferase [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 438

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 157/364 (43%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQ 65
           E Q + K   L Q +   Q   +Q+    + EP HYR R    +  D     L   +  +
Sbjct: 98  ELQRSAKQKALIQRLSRLQPEPIQLMPLLQGEPWHYRRRVRLSMGFDSKTRKLSIGLRRK 157

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
             ++ + +++       +N L+ ++ A +  +     +L  I+   + +  A++     R
Sbjct: 158 NAQQIIPLEHCPVLEQPLNDLLPKLTA-LFAQWSAPQQLGHIELAAADNGIAMLL----R 212

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            + +        L     A ++ + L  +   T   ++  +  +        L  +   +
Sbjct: 213 HIKNVAENDRTLLLKF--AERHHLMLFVQEQDT---IEHWHGGQPFYRLDNDLTLQFDIS 267

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q NA +N  M+   L      + D +L+L+CG GNF+L +AR     + +E     V
Sbjct: 268 DFIQINAALNRQMINTALDWLALNERDHVLDLFCGMGNFTLPIARRVKSAVGIEGVSAMV 327

Query: 245 EAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           E AR N   N  +NV+  +    + F      ++ FN+             I +DPPR+G
Sbjct: 328 EKARRNAERNRCHNVQFDQADLDKSFVNQGWAQQPFNK-------------ILLDPPRTG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
              A   + Q    +ILY+SCNP +L RD  IL +  + ++++A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCQLQAENILYVSCNPATLVRDTEILHNAGYQLDKVAMIDMFPHTGHLESISL 434

Query: 362 LVRK 365
             +K
Sbjct: 435 FRKK 438


>gi|194707300|gb|ACF87734.1| unknown [Zea mays]
          Length = 360

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 48/336 (14%)

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-TIRLEPL--------LRAKLFQID-YL 110
             FD+    +       P   ++  +    M   I L P         L+  + +    +
Sbjct: 42  GFFDKVLHVQKCFLQSEPADKVLAVVQETWMDPAIGLTPYDVHKHVGFLKHLMIRTGRNI 101

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDA------LHARKYQIQLIGRANKTKICLDR 164
           ++ + + +V  +      D       ++         ++     +       +      +
Sbjct: 102 STGTPEVMVNFVTSCYKPDVLMPLVDKITKIPEVVSVINNVNSSVGNSSVGEQEYTLYGK 161

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGN 220
             + E L    R L ++   NSF Q N      +L  ++  + G++GD    +L+L+CG 
Sbjct: 162 PNITEML----RGLAFQISANSFFQTNTKQAD-VLYKLIEDSAGLKGDGSEIVLDLFCGT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   L  AR    +   E+   ++E AR N   N +NN   V+    +  ++  +E    
Sbjct: 217 GTIGLTFARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFVQGDLNKINESFGKEF--- 273

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
                     +   I  DP R G+    +  +     P I+Y+SCNP +  RDL  L   
Sbjct: 274 ---------PKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDLDYLCHG 324

Query: 339 ---------HTIERLALFDQFPYTRHMECGVLLVRK 365
                    + ++ +   D FP+T H+EC  LL  +
Sbjct: 325 VEEKDLRGFYELKSVIPVDMFPHTPHIECVCLLELR 360


>gi|269120866|ref|YP_003309043.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
           33386]
 gi|268614744|gb|ACZ09112.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
           33386]
          Length = 456

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 138/392 (35%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNL--QIFRSEPIHYRMRAEFHIW----- 52
             T     Y  QL  K  ++R++         N    +   +   YR + E         
Sbjct: 80  GCTYQHLSYNDQLELKTGQIRELFGGKQIDFENFLGIVPAKQQFGYRNKMELTFGNAEKD 139

Query: 53  -------HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRA 102
                  H     Y I+  +  K  M  D+    +  I+    E       ++    LR 
Sbjct: 140 GPLTLGLHKRGSFYDIITIRDCK-LMDEDFNKITNFTIDFFKKENLSFYHKMKHTGFLRN 198

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWR------ECAIRLRDALHARKYQIQLIGRAN 156
            + +    T +    ++T        + WR      E + ++   L      I     + 
Sbjct: 199 LVIRKGEFTGELLINLITTSQSDYDMNEWRNGILSLELSKKIIGLLWTINDNISDAVNSE 258

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-E 215
             KI        E+L        ++    SF Q N+     +   VL      +  ++ +
Sbjct: 259 SEKILYGEKDFHEKLLGHD----FKISPYSFFQTNSSGAELLYSKVLEFLPDTEDKIIFD 314

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           L+ G G    +++++   V  +E+ + +VE A  N   N++ N K +             
Sbjct: 315 LFSGTGTIGQIVSKNARYVYGIELVEEAVEKANENAELNNIKNCKFIAGDV--------- 365

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333
              F + +++     R   +  DPPR+G+    +  +  +    I+Y+SCNP +  +D+ 
Sbjct: 366 ---FKKAEELREADIRPDIVIFDPPRAGVGQKALEKILEFDMNEIIYVSCNPKTFIQDVE 422

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           IL      + +    D FP T H+E   LL +
Sbjct: 423 ILKKSGFELVKSVCVDMFPNTPHVEVVSLLEK 454


>gi|291547098|emb|CBL20206.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5]
          Length = 484

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 148/411 (36%), Gaps = 68/411 (16%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMM-------------LAFQVPNLQ----------IFR 37
            G +     YE Q   K  ++R+++                     +          I+ 
Sbjct: 37  GGCMYQTMSYEAQKEMKERQVRELLDGAVKESLAKIGKNGDGTEEAEAADHLYHWDGIYG 96

Query: 38  SE-PIHYRMRAEFHI---WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA- 92
           S     YR + EF     + DG     +     T + +  D        +  +++ +   
Sbjct: 97  SPIEFGYRNKMEFSFGDEYKDGPLSLGLHKKGSTYDILNTDDCKLVHPDMTKILVCVREF 156

Query: 93  ----------TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---- 138
                      ++    LR  L +    + +    +VT        +  +E  + L    
Sbjct: 157 FLERNASFYKKLQHVGYLRHLLLRRGVTSGEILVHVVTTTQEEYDLEPLKEQLLALPLEG 216

Query: 139 --RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                +H     +  + ++++TKI   +DY  E L      L ++    SF QPN+    
Sbjct: 217 KIVGIMHILNDSLSDVVQSDETKILYGKDYFYEELL----GLKFKISTFSFFQPNSLAAE 272

Query: 197 HMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   V       +  ++ +LY G G  + + A     V+ VEI + +V+AAR N A N 
Sbjct: 273 ILYSKVREYVGDTRDKVVFDLYSGTGTIAQLAASVASEVIGVEIVEDAVKAARENAALNG 332

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++N + +                   LK +D    +   I +DPPR G+    +  + AY
Sbjct: 333 IDNCRFIAGDV---------------LKVLDEVPEKPDMIILDPPRDGVHPKALPKILAY 377

Query: 316 P--HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLV 363
               I+YISC   SL RDL +     + +      DQF    H+E  VLL 
Sbjct: 378 GVDQIVYISCKVTSLVRDLPAFYEAGYEMTHACAVDQFCQGVHVETIVLLS 428


>gi|239905414|ref|YP_002952153.1| 23S rRNA (uracil-5-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
 gi|239795278|dbj|BAH74267.1| 23S rRNA (uracil-5-)-methyltransferase [Desulfovibrio magneticus
           RS-1]
          Length = 450

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 138/384 (35%), Gaps = 49/384 (12%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            Y  QL  K +++ + +              +   E   YR + EF        L+  + 
Sbjct: 88  DYPAQLFWKREQVAETLARLGGLPDVPVADTVASPEVYGYRNKMEFAF---AGRLHLGLR 144

Query: 64  DQQTKERM-RIDYFM-----------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
           +++   R+  ID                  L     +        + + R  + +     
Sbjct: 145 ERRNPARVLDIDTCPLMAPWAGEVVNAVRELCRETGLAAYDPRTGKGVWRHLVLRDSRHD 204

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAI-------RLRDALHARKYQIQLIGRANKTKICLDR 164
                 I+T    R   DA              L   +H+ +     +    +  I L R
Sbjct: 205 GSRLAHIITG-PSRAAGDAVHTLGKTLLARFPELTGFVHSVRRAPTPVAHGERQSIVLGR 263

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNF 223
            ++ E++  A      R + ++F Q N G    + E V   A+    G  L+LYCG+G  
Sbjct: 264 GHLTEKMGQA----TLRVLPDAFAQTNTGAAQSLYEIVTREASSDPAGTALDLYCGSGGL 319

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L LA  F  V  ++I   S+E+A+ +   +  +N                 E       
Sbjct: 320 ALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCVF--------------EAADAADA 365

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341
             D+       + +DPPR+G     +  +   A   ++Y+SCNP +L RDL  L+  + +
Sbjct: 366 LDDLAGDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLARDLKRLAEAYDV 425

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
             +   D FP+T H+E    L  +
Sbjct: 426 TSVTPVDLFPHTAHIEAVASLTLR 449


>gi|229846419|ref|ZP_04466527.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|229810512|gb|EEP46230.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|309972509|gb|ADO95710.1| 23S rRNA m5U1939 methyltransferase [Haemophilus influenzae R2846]
          Length = 530

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 32/369 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W + +     M  +Q
Sbjct: 98  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQ 156

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  +++K    +++ Y D         +      
Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N A N + N++  +    +               +    +  F  I +DPPRSG
Sbjct: 327 VQKAAQNAARNQIKNIEFFQADLDQ------------SFVEQPWDNQSFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E  VL
Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLETVVL 434

Query: 362 LVRKPSGWH 370
           L +     H
Sbjct: 435 LSKLDVDKH 443


>gi|77919151|ref|YP_356966.1| RNA methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77545234|gb|ABA88796.1| 23S rRNA m(5)U-1939 methyltransferase [Pelobacter carbinolicus DSM
           2380]
          Length = 434

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 139/371 (37%), Gaps = 26/371 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
               L   Y +Q   K    R  ++       ++    +   +   YR R +    +   
Sbjct: 81  GCQWLHLPYAEQCHWKETIFRDFLVRKLDVDSELVRPIVPSPQQWGYRSRVQLKCLNTPK 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                 + + +   + +D+      L+N     + + I         + QID      DQ
Sbjct: 141 GFLVGFYRRGSHYVIPVDHCPILHPLLNQAKDLLRSWIENTRW-SQFVSQIDLAV--DDQ 197

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
             V  + H L +D   +    L+    +    +  +    K  +      V+  + V   
Sbjct: 198 ERVRAVVHCLANDV-DDFVTHLKPGALSANMGL-FVQTGRKHNLQHVCGPVELLIEVDTP 255

Query: 177 TLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
            L        F Q N   N  M+ E V        G +L+L+CG GNFSL +AR    V+
Sbjct: 256 ELRLGYGPGGFAQINLPQNRAMVREVVGTLVSNPPGRVLDLFCGMGNFSLPVARLAQEVV 315

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE    S+E AR N   N + NV           +A     E+     ID+       +
Sbjct: 316 GVEAYLQSIEMARLNARLNEIENVSFFA------REAYGAATEYGADGAIDL-------V 362

Query: 296 FVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYT 353
            +DPPRSG  D    +V   P  ILY+SC+P +L RD L +L   + +     FD FP+T
Sbjct: 363 IMDPPRSGAYDVARELVTVRPARILYVSCDPPTLVRDLLPLLHNGYRLVWSRPFDLFPHT 422

Query: 354 RHMECGVLLVR 364
            H E    L R
Sbjct: 423 HHTESITFLER 433


>gi|299782720|gb|ADJ40718.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
           fermentum CECT 5716]
          Length = 312

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 70/327 (21%), Positives = 118/327 (36%), Gaps = 40/327 (12%)

Query: 58  LYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQ 106
           +   ++   +   + +                   LI  L I +        +++    +
Sbjct: 1   MVAGLYQANSHTVVDMQTCAVQMPGTMKVINTLVKLIEELAIPVYNEANQSGIIKTLAVR 60

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTK 159
               T Q   AI+T     +   A     + + D L      +Q +          ++T 
Sbjct: 61  ESLATGQIQVAIITNTAKLIKKHA---LLVAIEDQLPEVTSVVQNVNPGDTPLVWGDETT 117

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           +   +DY+ E L      L +R    SF Q N      + E    A    + D L++ Y 
Sbjct: 118 LLYGQDYITESLM----GLDFRLSARSFLQLNPEQTEVLYEEAAKALDLSKDDTLIDAYA 173

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA    +V+ +E    +V+ A  N   N V N +     ++E     R    
Sbjct: 174 GIGTIGLSLANRVKQVIGMETIADAVQDANNNATLNGVTNARYEVGPAEELLPKWRS--- 230

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                        F  + VDPPR+GLD+A +  +  +      Y+SCN  +L R+L+ L 
Sbjct: 231 ---------QGQHFDALVVDPPRTGLDNALIDTILQEKPAKFAYVSCNMATLARNLARLV 281

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLV 363
            T+ +  +   D  P T   E  V LV
Sbjct: 282 PTYRVAYIQPVDMLPQTPRCEAVVKLV 308


>gi|110834485|ref|YP_693344.1| RNA methyltransferase [Alcanivorax borkumensis SK2]
 gi|123050449|sp|Q0VP26|RUMA_ALCBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|110647596|emb|CAL17072.1| RNA methyltransferase, TrmA family [Alcanivorax borkumensis SK2]
          Length = 445

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 139/380 (36%), Gaps = 40/380 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             +L     E Q++ K   LR+ +  F     +            YR +A   + +    
Sbjct: 85  GCSLQHMSPEVQVSRKQAVLREQLAHFGGLEPEEWLAPLTGPVTGYRSKARMGVKYVEAK 144

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +      +++     ++         +   + E+   +      R+++ QI+      D
Sbjct: 145 GETLVGFREKRNSFIAQLHTCEVLIPDVGHRIDELRTLMHGLES-RSRIPQIELAAGDDD 203

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A++     R LD         L        +   L      T   +     ++RL    
Sbjct: 204 VALII----RHLDPLSEADQQALLGFCQNLGWHCYLQPGNESTVHRIWPQEGEQRLYYKH 259

Query: 176 ----RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARH 230
                 L +      FTQ NA IN  M+   L          +L+L+CG GNF++  A+ 
Sbjct: 260 PSAGVELAFH--PTDFTQVNAEINRKMVPLALDLLDISPDHTVLDLFCGLGNFTIPAAKR 317

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V+ VE+++  VE    N   N + N++       +        R+            
Sbjct: 318 AGKVVGVEVSQAMVERGYENARRNSLENLEFHAWDLSQDVSGQAWARQ------------ 365

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-THTIERL 344
            +  I +DPPR+G     + MV+  P      I+Y+SCNP +L RD   L    + ++  
Sbjct: 366 TYDRILIDPPRTG----ALEMVKLMPRLGASKIVYVSCNPATLARDAGELMALGYRLKAA 421

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 422 GVMDMFPHTTHVESIAVFEK 441


>gi|254361966|ref|ZP_04978097.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213]
 gi|261493685|ref|ZP_05990204.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494352|ref|ZP_05990846.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153093513|gb|EDN74493.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213]
 gi|261310001|gb|EEY11210.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310685|gb|EEY11869.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 439

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 143/370 (38%), Gaps = 29/370 (7%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDD 57
            G  +     E Q   K   L Q +   Q   + +         HYR RA+  I      
Sbjct: 91  GGCQMQHISLELQRKAKQQALFQRLQKLQTHAIDVQPMIIGNDKHYRRRAKLSIAIQQGK 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                  Q + + + + +       +  L+ ++   I      + KL  I+ +++ +  A
Sbjct: 151 AVIGFRLQNSNQIIPLAHCEVLVEPLANLLPKLKHLIENWQQPK-KLGHIELVSADNTIA 209

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +    + R L     +    LR      +  + ++   N  +         ER     + 
Sbjct: 210 L----FFRHLGALSAQDNHNLRQFATQEQLSLFVMTSENHIEHLCG-----ERPYYQIQG 260

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           L        F Q NA +N  M+E  L       Q  +L+L+CG GNF+L +A     V+ 
Sbjct: 261 LKLHFSIRDFIQVNATLNEKMVEKALEWLELSNQDRVLDLFCGMGNFTLPIAERAKSVVG 320

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +P V+ AR N   + + NV+  + +  E               D       F  + 
Sbjct: 321 VEGVEPMVQQARENAVTSGLKNVEFYQTNLDE------------PFSDKPWAKEPFNKVL 368

Query: 297 VDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTR 354
           +DP R+G       +    P  I+Y+SCNP +L RD   +L   + +E+ A+ D FP+T 
Sbjct: 369 LDPARNGALFCLDHLTSLNPERIVYVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTG 428

Query: 355 HMECGVLLVR 364
           H+E   L ++
Sbjct: 429 HLESISLFLK 438


>gi|125977774|ref|XP_001352920.1| GA17699 [Drosophila pseudoobscura pseudoobscura]
 gi|54641671|gb|EAL30421.1| GA17699 [Drosophila pseudoobscura pseudoobscura]
          Length = 631

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 158/423 (37%), Gaps = 66/423 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45
             L    Y+ QL +K + +  ++  +            P+L      ++  S  +  YR 
Sbjct: 158 CPLAGITYDDQLKQKSEEMSTLLKKYTQELRKINPQAKPHLDSFKFNEVLPSPTVNGYRN 217

Query: 46  RAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMIEMMATIRLE 97
           + EF +  + +    + F   +         E   + +    +        +++   + +
Sbjct: 218 KNEFTVGKNSEGEVVVGFRLGSYSDGSVEVAEVQDLPHLPDQAKWAAQSFQKLVRQSKFQ 277

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARKYQ 148
           P          R  + +    T +    +V  IY   L +D  +E    L+        Q
Sbjct: 278 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQQELKQELKSFYEHASEQ 335

Query: 149 -----------IQLIGRANKTKICLDRDYVDER--LTVAGRTLIYRQIENSFTQPNAGIN 195
                       Q +      ++    D++     +T   + L +R    +F Q N    
Sbjct: 336 DDATFKCTSLYYQDVKHREAGQMVNPVDHILGTTHITDTIQGLQFRISPLAFFQINTEGA 395

Query: 196 VHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             + +  +      +   +L++ CG G  +L  A+H  RVL VEI   +++ A++N  AN
Sbjct: 396 NVLYQQAIDLVAPTKDTTMLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEAN 455

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ- 313
            + N K    ++ +F ++M RE  + +     +         VDPPR+GL + ++  ++ 
Sbjct: 456 GIKNCKFFTGNADDFIKSMVREAMYEQEPGKPVDL----IAVVDPPRAGLHNRSIAAIRS 511

Query: 314 --AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLL 362
             A   ++Y+SCNP S  R+   L               +     D FP+T H E  +L 
Sbjct: 512 ASAINRLVYVSCNPHSAKRNFIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELVILF 571

Query: 363 VRK 365
            R+
Sbjct: 572 ERE 574


>gi|328676686|gb|AEB27556.1| 23S rRNA (uracil-5-) -methyltransferase RumA [Francisella cf.
           novicida Fx1]
          Length = 449

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 153/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRSAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIQRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+   A N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETAADNNIVNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|261856076|ref|YP_003263359.1| RNA methyltransferase, TrmA family [Halothiobacillus neapolitanus
           c2]
 gi|261836545|gb|ACX96312.1| RNA methyltransferase, TrmA family [Halothiobacillus neapolitanus
           c2]
          Length = 442

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 139/374 (37%), Gaps = 28/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
             ++     E+QLA K   L   +      +              YR +A   + +    
Sbjct: 83  GCSMQHLTSEKQLATKEQALLDQLQRIGKVSPATVLPALARANWGYRRKARLGVKYVQKK 142

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++ T     +         +   + E+   I      R ++ QI+       
Sbjct: 143 GRVIVGFRERHTHFLSDLQNCRVLDPRVGERLTEIGEIIHSLEA-RERIPQIEVACGDDR 201

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV-DERLTVA 174
            A+V     R LD   +    +LR+      + I L   +N +   LD+ +V        
Sbjct: 202 VALV----FRNLDPLSQSDKEKLRNFGTQEGFDIYLQPGSNDSVHPLDKAHVAPLTYAHP 257

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              +        F Q N  +N  M+   L       GD +L+L+ G GNF+L +AR   +
Sbjct: 258 SFDVSIEFTPLDFIQINTDVNRAMIVQALEWLDVQPGDHVLDLFAGLGNFTLPIARKAAK 317

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V AVE+ +  V+    + AAN + N + V  +             F            + 
Sbjct: 318 VTAVELDEHMVKRGAQSAAANGITNTEHVIGN------------LFEPDPTHLWMQQTYD 365

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
            + +DPPR+G +     + + A   I+Y+SC+P SL RD  IL     + +    + D F
Sbjct: 366 RVLLDPPRAGAEAMMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYRLIAAGVMDMF 425

Query: 351 PYTRHMECGVLLVR 364
           P+T H+E   +  R
Sbjct: 426 PHTSHIESMAVFER 439


>gi|313678801|ref|YP_004056541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mycoplasma bovis PG45]
 gi|312950249|gb|ADR24844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mycoplasma bovis PG45]
          Length = 440

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 148/378 (39%), Gaps = 31/378 (8%)

Query: 2   SGTLLIDQ--YEQQLAEKVDRLRQMMLA--FQVPNLQIFRSE-PIHYRMRAEFHIWHDGD 56
           SG+  +    Y  QL  K + ++Q+          L I +S     YR +      +  +
Sbjct: 80  SGSAPLANISYNDQLEFKENFVKQLFKRNLHYSNILPILKSGYEWRYRNKLLLFTKNIQN 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP---LLRAKLFQIDYLTSQ 113
            +   ++++ T   +  D +   S     +++ +   I        ++  L  I    S 
Sbjct: 140 IIKIGLYEKNTHNLIEQDSYDLVSEYSEKVLLWLSKNINDYDCFKNVKNSLISISIRESN 199

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            ++ I+         D  ++    +          + ++      K      Y+ E++  
Sbjct: 200 FNKEIMLYFTASKSFDLSKQFFSDIASEFKNIVSILIIVNDKVVNKYLSQNTYLIEKVG- 258

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232
                 ++   NSF Q N+    ++   ++   +      +++ YCG G  SL LA+   
Sbjct: 259 ---NFTFKYNWNSFFQINSEQTENLYSLLINNLSLDKNKTVIDAYCGIGTISLFLAQKSK 315

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V  +EI   +V  A+ N  +N +NNV  +                   +K ID    + 
Sbjct: 316 KVYGLEIVNEAVINAKENAISNDINNVDFIAGDV---------------IKSIDKIKEKV 360

Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             + VDPPRSGL D  +  + +     I YISCNP ++CRD++ LS   + I  L   D 
Sbjct: 361 DILVVDPPRSGLSDEFLSKILSIRPKEIGYISCNPHTMCRDINTLSKSGYEISYLRPCDM 420

Query: 350 FPYTRHMECGVLLVRKPS 367
           F  T H+E   +L  K +
Sbjct: 421 FCQTYHIEVVAVLRLKEN 438


>gi|328954670|ref|YP_004372003.1| RNA methyltransferase, TrmA family [Coriobacterium glomerans PW2]
 gi|328454994|gb|AEB06188.1| RNA methyltransferase, TrmA family [Coriobacterium glomerans PW2]
          Length = 411

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 82/405 (20%), Positives = 133/405 (32%), Gaps = 60/405 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-------PNLQIFRS----------EPIHYR 44
               L   Y +QL  K   L ++              +                 P  +R
Sbjct: 18  GCAWLGIPYLKQLRRKHAALTELFEPLARRHEISICIDPVRGMGADSDSDTRILPPRGFR 77

Query: 45  MRAEFHIWHDG-DDLYHIMFDQQTKERMRIDYFM---PGSLLI--------NALMIEMMA 92
            +A           L    F + T E +  +  +   PG+  I            +    
Sbjct: 78  FKAATPFAPGMCGSLRSGFFARGTHEIIESEDCIVEAPGARRILHAVAVAAERSGVSAYD 137

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVT---LIYHRLLD-DAWRECAIRLRDALHARKYQ 148
             R    LR  + ++   + +    IVT    I H     D  R+   R+R        +
Sbjct: 138 EDRRRGALRHAVVRLGRRSDEGMLTIVTSGREIAHLAAFVDRLRDIDPRVRTVAQNVNLR 197

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                  ++T+I +    + +RL        +     +F Q N      +    +     
Sbjct: 198 ATNAILGSETRILVGPPRMRDRLLECD----FEISPTAFFQTNPEQTEVLYRVAIEHMAL 253

Query: 209 IQGDL-LELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVN-NVK 260
             GD+ L+ YCG+G   L  A H        RV+ VE     V  AR N   N ++   +
Sbjct: 254 DDGDVVLDAYCGSGTIGLSCAAHMRASGRPIRVIGVERNPAGVRDARRNAEINGLDAMAR 313

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318
            V   +  +                     R   + +DPPR+G     +      A   I
Sbjct: 314 FVEQDATAYIAG------------AADAGDRVDVLVLDPPRAGASPELLAAAVRLAPRRI 361

Query: 319 LYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +YISCNP +  RDL S+L     + R+   D FP+T H+E   +L
Sbjct: 362 VYISCNPVTQARDLDSVLDAGFRLMRVTPVDMFPHTSHIETVAVL 406


>gi|113954400|ref|YP_730547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CC9311]
 gi|113881751|gb|ABI46709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CC9311]
          Length = 464

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 139/391 (35%), Gaps = 48/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56
             +L   +   Q   K  RL Q +      N+Q         E + YR RA   +    D
Sbjct: 87  GCSLQHLEESIQAEWKRSRLEQTLKRIGGINIQSPAPINNDLEHLGYRNRALIPLLRKED 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            +    + + +   + +         I+AL+  +   +                LR    
Sbjct: 147 QMRLGYYRRGSHRIVNLSRCPVLDPRIDALIKPLKQDLEGSGWPADADLHGELGLRHLGL 206

Query: 106 QIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           ++   T +    +V+    L   + L   W      +       + +         T   
Sbjct: 207 RVGVRTGELLITLVSATAELNGMKDLAVEWMNRWPAVTGVTLNLQPRRSNTILGAITHTL 266

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYC 218
             RD + ER       L       +F Q N      ++  VL      +GD   L++ YC
Sbjct: 267 AGRDCISERFC----NLQLLLGTTTFFQINTDRAEQIV-MVLRNWLLQRGDCKRLIDAYC 321

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  SL +A     V+ +EI   SV+ AR N A N + + K                  
Sbjct: 322 GIGTISLPVAAAGIGVVGLEINPASVQQARQNAALNGLTDAKFEAGDVASLLS------- 374

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL- 335
            + L D D        + VDPPR GL    +  +   P   + Y+SC+  +L RDL  L 
Sbjct: 375 -DYLPDHDA-------LVVDPPRKGLASDVLDAILNCPPKRLAYLSCDSATLARDLKRLV 426

Query: 336 --STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +  + I+R+   D FP T H+EC VL+ R
Sbjct: 427 SDNGPYAIDRIQPVDFFPQTTHLECLVLMER 457


>gi|183600076|ref|ZP_02961569.1| hypothetical protein PROSTU_03609 [Providencia stuartii ATCC 25827]
 gi|188022362|gb|EDU60402.1| hypothetical protein PROSTU_03609 [Providencia stuartii ATCC 25827]
          Length = 443

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 147/364 (40%), Gaps = 28/364 (7%)

Query: 13  QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
           Q   K + L+ ++      Q     I   E   YR RA   + +     + +M  +QT  
Sbjct: 100 QRESKANALQHLIARETGVQKEAKPIIFGEAYGYRRRARLGLQYQNKSKHLLMGFRQTQS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
              + I         +  L+  +   +        KL  ++ +  ++D +++ L+ H  L
Sbjct: 160 NTLVDIKQCPVLHHDLERLIQPLSDCLNQLKAAP-KLGHVELI--RADNSLIVLLRH--L 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
                     L+      +  + L G  + +   L    V     VAG  L +     +F
Sbjct: 215 VPLAPSDQQLLKSFEQQHEVCVWLAGDEH-SLHPLSASTVIPEYQVAGEMLQF--SPLNF 271

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N+ IN  M+   L        D +L+L+CG GNF+L +AR    V+ VE  +  V+ 
Sbjct: 272 IQVNSDINQKMVAQALEWLDLHPHDRVLDLFCGMGNFTLPIARRVKAVVGVEGVENLVKQ 331

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR N   N + N      + +             ++      +  F  + +DP R+G   
Sbjct: 332 ARNNAQRNSIGNATFYNENLEA------------QIHTQPWAAEGFNKVLLDPARAGAAG 379

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               +V+  P  I+Y+SCNP +L RD   +L   + + +L + D FP+T H+E  VL + 
Sbjct: 380 VMEHLVKLMPEKIVYVSCNPTTLARDSKILLQAGYQLVQLRMLDMFPHTSHLESMVLFIN 439

Query: 365 KPSG 368
            P G
Sbjct: 440 SPEG 443


>gi|229591917|ref|YP_002874036.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas fluorescens
           SBW25]
 gi|229363783|emb|CAY51209.1| 23s rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens
           SBW25]
          Length = 450

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 142/372 (38%), Gaps = 32/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    + +QLA K   L + +        Q            YR RA   +  D   
Sbjct: 99  GCSVQHLPHAEQLALKQRMLAEQLSRVAGVEPQEWAAPLSGPEFGYRRRARVAVRWDAKA 158

Query: 58  LYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +  +  +   +++ + ID        +  +M  +   +R     +A L  ++  +  S 
Sbjct: 159 KHLAVGFRAVASQDIVAIDDCPVLVQALQPIMQRLPNMLRRLSKPQA-LGHVEVFSGTS- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-RLTVA 174
              V L +   L +A                +  QL          +D D V   RL   
Sbjct: 217 -IAVLLRHMAPLSEADLHILKEFCTF-----HDAQLWLHGEGQPEPVDADAVLGFRLEQW 270

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              L YR     F Q NAG+N  M+   L        + +L+L+CG GNF+L LAR    
Sbjct: 271 DLELAYR--PGDFVQVNAGVNAAMVAQALEWLAPQPDERVLDLFCGLGNFALPLARQVRE 328

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+AVE  +  V+ A  N  +N+++N +  +    +             L D +     F 
Sbjct: 329 VVAVEGVQTMVDRAAVNAVSNNLHNAQFFQADLSQ------------PLTDAEWAKQGFS 376

Query: 294 TIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
            + +DPPR G  +    +       ++Y+SCNP +L RD   L    + ++R  + D FP
Sbjct: 377 AVLLDPPRDGALEVVRKLATLKAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFP 436

Query: 352 YTRHMECGVLLV 363
            T H+E   L  
Sbjct: 437 QTAHVEAMALFE 448


>gi|322831386|ref|YP_004211413.1| RNA methyltransferase, TrmA family [Rahnella sp. Y9602]
 gi|321166587|gb|ADW72286.1| RNA methyltransferase, TrmA family [Rahnella sp. Y9602]
          Length = 456

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 125/357 (35%), Gaps = 36/357 (10%)

Query: 20  RLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG-----------DDLYHIMFDQQTK 68
           RL           L +       YR RA   +   G             L      + + 
Sbjct: 110 RLISRETGILADPLPVIAGPQYGYRRRARLGLQIAGVKPGRKAGAVSGPLVMGFRQEGSN 169

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           + + I         +  L++ +   +      + +L  ++ + + +   +V     R LD
Sbjct: 170 DLVAITRCPVLRPELEQLLVPVQECLSSLSAAK-RLGHLEMVLADNGPLLVL----RHLD 224

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
                   RL       +  I L   +             E        L  +     F 
Sbjct: 225 PLSEADRARLTAFAAQHQLTIFLAPDSETLAPLCG-----EPPYYQIDGLNLKFGPRDFI 279

Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q N  +N  M+   L   +    D +L+L+CG GNF+L LA+  ++V+ VE     V   
Sbjct: 280 QVNDAVNQQMVAQALDWLELTPEDRVLDLFCGMGNFTLPLAKRANQVVGVEGVATLVANG 339

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + N   N + NV     + ++             +      +  F  I +DP R G    
Sbjct: 340 QDNARNNGLENVSFFHENLED------------DVSKQPWAAQGFNKILLDPARGGAAGV 387

Query: 308 TVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
              +V+  P  ++Y+SCNP +L RD   +L   + +  + + D FP+T H+E   L 
Sbjct: 388 MTHIVKLAPARVVYVSCNPTTLARDSKILLEAGYRLAGVRMLDMFPHTGHLESMALF 444


>gi|302784258|ref|XP_002973901.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii]
 gi|300158233|gb|EFJ24856.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii]
          Length = 536

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 142/418 (33%), Gaps = 79/418 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLA---FQVPNL--------QIFR-SEPIHYRMRAEFHIWH--- 53
            YE QLA K D++ Q++     F              IF  +   HYR + EF       
Sbjct: 132 SYEAQLAAKEDQVHQLISRVGRFGRSEESGSGSYLKPIFPCANQYHYRNKMEFSFGTRWL 191

Query: 54  -------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM---------- 90
                          D    +       + + I   +    + N +++++          
Sbjct: 192 PPNEFVKNQSPDIKEDFALGLHVPGSYDKILDIRECLLQHDVANQILLDVHTFCETHRND 251

Query: 91  ---MATIRLEPLLRAKLFQ--IDYLTS--QSDQAIVTLIYHRLLDDAWRECAI---RLRD 140
                T      LR    +   D  T   Q    IVT ++H  +     E  +    +  
Sbjct: 252 LSAYDTKTHSGFLRHLTLRSGHDEHTGKLQVMVNIVTSVHHPRMIKPLIEKLVTYSEVTS 311

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            ++     +   G   K  +      + ERL    R L++    NSF Q N      + E
Sbjct: 312 IVNNVTSSMANTGVGEKQYLLYGAPAITERL----RGLVFEISANSFFQTNTSQAEVLYE 367

Query: 201 WVLAATKGIQG----DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            V  A    +     ++L+L+CG G   L +A   + V   E+ + +V  AR N   N++
Sbjct: 368 VVEKACNLTEASSEMNMLDLFCGTGTIGLSMANKVNHVYGYELVQEAVANARRNANRNNI 427

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            N   ++    + T                    R   I  DP R G+    +  +    
Sbjct: 428 LNATFIQGDLNKLTSGFGGNF------------PRPDIIITDPNRPGMHPKLLQFILKSG 475

Query: 317 --HILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVLLV 363
              ++Y+SCNP +  RDL +L            + +  +   D FP+T H+EC   L 
Sbjct: 476 AARVVYVSCNPATCARDLDVLCHSKDGSDLAGGYRLLSVQPIDMFPHTPHVECVCALE 533


>gi|254372579|ref|ZP_04988068.1| RNA methyltransferase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570306|gb|EDN35960.1| RNA methyltransferase [Francisella novicida GA99-3549]
          Length = 449

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 153/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQDDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPTAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+   A N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETAADNNIVNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|315231713|ref|YP_004072149.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP]
 gi|315184741|gb|ADT84926.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP]
          Length = 417

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 146/375 (38%), Gaps = 46/375 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
              L    Y +Q+  K ++L  ++         I   +   +R R +  I  +G      
Sbjct: 73  GCVLQHLPYSEQIKFKAEKLENLL---GYAVDVIPSPKIYGHRNRIDVVISTEGIGFRRR 129

Query: 62  MFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
                    + I+  +                I    ++     + E  +R  + +    
Sbjct: 130 GTWWD---VVDIEKCIVFGEKSGRALKSLREFIEDFKLQPWNLRKSEGFMRYIVMREGKF 186

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
           T +    +VT  Y   L D  +E          +       +      K   +R+++ ER
Sbjct: 187 TGELMINLVT--YEGSLPDEVQEYFSFADSIYWSVNSSKSDVSYGEPRKF-WNREFIKER 243

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           L      ++Y    NSF Q N+   V++++ V    +G +  +L+LY G G F + LA+ 
Sbjct: 244 L----DDVVYLIHPNSFFQTNSYQAVNLVKKVAEFAEGKK--VLDLYSGVGTFGIYLAKK 297

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V  +EI   +VE AR N   N+V+  K      K                    +  
Sbjct: 298 GFEVEGIEINPFAVEMARKNAEINNVD-AKFYVGEDKSV-----------------GNLG 339

Query: 291 RFKTIFVDPPRSGLDDATV-GMVQAYPHI-LYISCNPDSLCRDLSILSTTHTIERLALFD 348
           ++ TI VDPPR+GL    +  M++  P I +Y+SCNP +L ++L  L + + +E +   D
Sbjct: 340 KYDTIVVDPPRAGLHPKLIRKMLKDAPEIIVYVSCNPKTLAKNLEELKSIYKVEEIIGLD 399

Query: 349 QFPYTRHMECGVLLV 363
            FP+T H+E    L 
Sbjct: 400 MFPHTPHVEVVTKLK 414


>gi|312962346|ref|ZP_07776837.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens
           WH6]
 gi|311283273|gb|EFQ61863.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudomonas fluorescens
           WH6]
          Length = 450

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 148/371 (39%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGD- 56
             ++    +++QLA K   L + +        Q          + YR RA   +  D   
Sbjct: 99  GCSVQHLPHDEQLALKQRMLAEQLSRVAGVEPQEWAPPLSGPELGYRRRARVAVRWDAKA 158

Query: 57  -DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L        +++ + ID        +  +M  +   +R     +A L  ++  +  S 
Sbjct: 159 KKLEVGFRAVASQDIVAIDDCPVLVQALQPIMQRLPNMLRRLSKPQA-LGHVELFSGSS- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L +   L DA       L++     + Q+ L G      +  D+  +  RL    
Sbjct: 217 -IAVLLRHMAPLSDA---DLQVLQEFCAFHEAQLWLHGEGQPQPVEPDQ-ALGFRLEAWD 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L YR     F Q NAG+N  M+   L        D +L+L+CG GNF+L LA+    V
Sbjct: 272 LALAYR--PGDFVQVNAGVNEAMVTQALEWLAPQPDDRVLDLFCGLGNFALPLAKQVREV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  VE A  N  +N+++NV+  +    +             L D +     F  
Sbjct: 330 VAVEGVQTMVERAALNAVSNNLDNVQFFQADLSQ------------PLTDAEWAKQGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    +       ++Y+SCNP +L RD   L    + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAQEVVRKLATLGARRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|298492165|ref|YP_003722342.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
 gi|298234083|gb|ADI65219.1| RNA methyltransferase, TrmA family ['Nostoc azollae' 0708]
          Length = 455

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 144/393 (36%), Gaps = 52/393 (13%)

Query: 2   SGTL---LIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH 53
            G     + D Y  QL  K +++ Q +           +  +     + YR +  + +  
Sbjct: 83  GGCQWQHIDDDY--QLTAKQNQVIQALERIGRFANPPVDPVLVADSSLAYRNKVTYPLGI 140

Query: 54  DG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE-----------MMATIRLEPLLR 101
                +    + + + + + ++        +N L+ E           +    R +  +R
Sbjct: 141 SPTGQVQAGYYQKGSHQLINLNQCPVQDSRLNPLLAEVKLDIQKRGWSIYDETRHQGSIR 200

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGRANK 157
               +I   T +    +V    +    +     W +    L      R      +   N+
Sbjct: 201 HLGLRIGRRTGEMLLTLVVKDKNLPGIETQAQEWLQRYPHLMGVCLNRNSDRTNVIFGNE 260

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
           T       ++ E+       + ++    +F Q        +L  V+ +    QG+  L++
Sbjct: 261 TVCIAGIPHLREKFA----DIEFQVRPETFFQVYTETAEALL-QVIQSELNFQGNEILVD 315

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G  +L LA+   +V+ +E+   +VE A +N   N +NNV     + +        
Sbjct: 316 AYCGIGTLTLPLAKQSHQVIGLEVQSAAVEQAIFNAQHNGINNVTFQVGAVE-------- 367

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333
                  K++         + +DPPR G +   +  + +     I+Y++C   +L RDL 
Sbjct: 368 -------KNLPNLGIIPDIVLLDPPRKGCEANVIKSLLSLKPSRIVYVTCKVATLSRDLK 420

Query: 334 ILSTT--HTIERLALFDQFPYTRHMECGVLLVR 364
           +L     + + R+   D FP T H+E    LVR
Sbjct: 421 LLCEHGLYKLTRVQPADFFPQTAHVESAAFLVR 453


>gi|254374038|ref|ZP_04989520.1| RNA methyltransferase [Francisella novicida GA99-3548]
 gi|151571758|gb|EDN37412.1| RNA methyltransferase [Francisella novicida GA99-3548]
          Length = 449

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   RLR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLERLRSFAQENNYWIYLQSKGPDTIFRLYPQDDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGINIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|302771483|ref|XP_002969160.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii]
 gi|300163665|gb|EFJ30276.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii]
          Length = 536

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 141/418 (33%), Gaps = 79/418 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV------------PNLQIFRSEPIHYRMRAEFHIWH--- 53
            YE QLA K D++ Q++                     +  +   HYR + EF       
Sbjct: 132 SYEAQLAAKEDQVHQLISRVGRFGRSEESGSGSYLKPILPCANQYHYRNKMEFSFGTRWL 191

Query: 54  -------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM---------- 90
                          D    +       + + I   +    + N +++++          
Sbjct: 192 PPNEFVKNQSPDIKEDFALGLHVPGSYDKILDIRECLLQHDVANQILLDVHTFCETHRND 251

Query: 91  ---MATIRLEPLLRAKLFQ--IDYLTS--QSDQAIVTLIYHRLLDDAWRECAI---RLRD 140
                T      LR    +   D  T   Q    IVT ++H  +     E  +    +  
Sbjct: 252 LSAYDTKTHSGFLRHLTLRSGHDEHTGKLQVMVNIVTSVHHPRVIKPLIEKLVTYSEVTS 311

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            ++     +   G   K  +      + ERL    R L++    NSF Q N      + E
Sbjct: 312 IVNNVTSSMANTGVGEKQYLLYGAPAITERL----RGLVFEISANSFFQTNTSQAEVLYE 367

Query: 201 WVLAATKGIQG----DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            V  A    +     ++L+L+CG G   L +A   + V   E+ + +V  AR N   N++
Sbjct: 368 VVEKACNLTEASSEMNMLDLFCGTGTIGLSMANKVNHVYGYELVQEAVANARRNANRNNI 427

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            N   ++    + T                 +  R   I  DP R G+    +  +    
Sbjct: 428 LNATFIQGDLNKLTSGF------------GANFPRPDIIIADPNRPGMHPKLLQFILKSG 475

Query: 317 --HILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVLLV 363
              ++Y+SCNP +  RDL +L            + +  +   D FP+T H+EC   L 
Sbjct: 476 AARVVYVSCNPATCARDLDVLCHSKDGSDLAGGYRLLSVQPIDMFPHTPHVECVCALE 533


>gi|290476632|ref|YP_003469537.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289175970|emb|CBJ82773.1| 23S rRNA m5U1939 methyltransferase [Xenorhabdus bovienii SS-2004]
          Length = 450

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 134/368 (36%), Gaps = 35/368 (9%)

Query: 14  LAEKV-----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD-------GDDLYHI 61
           L  K      + L Q      +    I  S    YR R    + +D          L   
Sbjct: 99  LQAKTKASVLEHLIQRETGISISAHPIIHSPEYGYRRRVRLGLQYDVKKNPGRQQKLLMG 158

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
               QT + + + +       +  L+  +   +     ++ +L  ++ + + +   +V  
Sbjct: 159 FRQSQTNDLVAVAHCPVMRPELEQLLQPLSQCLNSLSAVK-RLGHVELVLADNGPLMVL- 216

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
              R L     E   +LR      K  + L G     +   +              L  +
Sbjct: 217 ---RHLAPLKHEDREKLRTFSVQHKAAVYLAGDEKILEPLTEGQTAP---WYQVDGLKLK 270

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIA 240
                F Q N  +N  M+   LA       D +L+L+CG GNF+L +A     V+ VE  
Sbjct: 271 FSPWDFIQINDEVNQKMVVQALAWLDLQPTDRVLDLFCGMGNFTLPMATKAQTVVGVEGV 330

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V   +YN   N +NNV     + +            + +         F  + +DP 
Sbjct: 331 AALVANGQYNAQLNELNNVDFFHENLE------------SDIHQQPWAVLGFNKVLLDPA 378

Query: 301 RSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358
           R+G       +V+  P  ++Y+SCNP +L RD   +L   + +  + + D FP+T H+E 
Sbjct: 379 RAGAAGVMSHIVKLAPERVVYVSCNPTTLARDSKILLEAGYHLVSVRMLDMFPHTGHLES 438

Query: 359 GVLLVRKP 366
             L  R+P
Sbjct: 439 MALFSREP 446


>gi|208779007|ref|ZP_03246353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida
           FTG]
 gi|208744807|gb|EDZ91105.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella novicida
           FTG]
          Length = 449

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIQRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNTKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|308176099|ref|YP_003915505.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter
           arilaitensis Re117]
 gi|307743562|emb|CBT74534.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter
           arilaitensis Re117]
          Length = 376

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 137/382 (35%), Gaps = 34/382 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDDL 58
           S TL+   Y QQL  KV+  ++++  F  P+L+      S    +R +A+  I    D  
Sbjct: 13  SCTLMTVPYAQQLQSKVEDCKRLLADF--PDLEFLPAQASSEQGFRNKAKMVISGTTDKP 70

Query: 59  YHIMFDQQTKER------MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
              + D + +        +  D       LI   + E+       P  + +L  +    S
Sbjct: 71  TIGILDAEGRGIDLRNCGVVADQLRAVFPLIERFIHELKLIPYDVPKRKGELKHVILTVS 130

Query: 113 QSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER- 170
            +   +V  +   +    A R+   +  + L             +K  +  + + +  R 
Sbjct: 131 DTGSVMVRWVLRTKKHFVALRDSLPQFLEQLPRHSVVSVNFLPEHKAVLEGEEEIILTRR 190

Query: 171 --LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
             L      +        F Q N+ +   +             + + +LY G G F+L  
Sbjct: 191 TTLEFGLNGVPMHLRPQGFFQTNSEVAAALYRQARQWINDANPESVWDLYSGVGGFALHC 250

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A     V  +E +  +VEAA  +  A  ++++      + EF                  
Sbjct: 251 AAEDRTVYGIETSTEAVEAAETSAKAMELDDIHFKAQDATEFALG--------------- 295

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLA 345
             +  + + V+PPR G+       +       I+Y SCN  SL RDL  L   +T     
Sbjct: 296 AGWAPEAVIVNPPRRGITADLSTWLNGSDVQQIIYSSCNAKSLARDLERLEN-YTPTLAR 354

Query: 346 LFDQFPYTRHMECGVLLVRKPS 367
           + D FP T H E  V L RK +
Sbjct: 355 VMDMFPQTNHYEVIVKLERKAA 376


>gi|119471910|ref|ZP_01614218.1| 23S rRNA (uracil-5)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gi|119445283|gb|EAW26573.1| 23S rRNA (uracil-5)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 441

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 141/373 (37%), Gaps = 29/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDG-- 55
              L      QQ+ EK   + Q+   F     +       S   HYR  A   +  D   
Sbjct: 89  GCQLQHLDVNQQVVEKQAAVEQLFEKFAKQTNLNWQAPLLSSSTHYRRSARIAVMFDKAA 148

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +        +K  + I+     +     +       I     L +       L     
Sbjct: 149 KKMRIGYRASGSKNIVSINKCAVLTDAYETVFTLFDELINHNKSLHS--ISHLQLCQSET 206

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V + + + + D  +   I+                  + T I +   Y+DE      
Sbjct: 207 HNFVVIRHTKAISDEAKAVVIKACTPYKYSVIWQSESDVIDHTNITMPYYYLDE------ 260

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             L +    ++F Q NA +N  ML+  V         ++L+L+CG GNFSLVLA+    V
Sbjct: 261 FKLKFGFGLDNFIQVNAQVNQAMLKQSVDWLGLSGNENILDLFCGIGNFSLVLAKQAKTV 320

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E    +V  A  N   N ++N +         TQ ++  + FN+             
Sbjct: 321 IGIEGVASAVAMAEQNAQTNSISNAQFHCFD---LTQKIQNAQWFNK---------NLDV 368

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
           + +DP R+G       + ++ +  ILY+SC+P +L RD +I+S     + ++ L + FP+
Sbjct: 369 LVLDPSRTGAMAILEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELNKIGLMNMFPH 428

Query: 353 TRHMECGVLLVRK 365
           T H+E   L  R+
Sbjct: 429 TGHIETMALFQRR 441


>gi|226328919|ref|ZP_03804437.1| hypothetical protein PROPEN_02821 [Proteus penneri ATCC 35198]
 gi|225202105|gb|EEG84459.1| hypothetical protein PROPEN_02821 [Proteus penneri ATCC 35198]
          Length = 441

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 128/336 (38%), Gaps = 24/336 (7%)

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMA 92
            +       YR RA   + +  +    + F Q ++ + + I         +N L+  +  
Sbjct: 126 PVIAGAEYGYRRRARLGLRYQSEKGLVMGFRQERSNDLVMIKKCPVLKPQLNDLLSPLWT 185

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
            +      R  L  ++ + + +  +++     R L          LRD     +  + L 
Sbjct: 186 CLNKLTSARD-LGHVEMVLADNGPSVIL----RHLSPLSEHDKQSLRDFSQTYQVTMYLA 240

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
           G  ++         +++        L  R     F Q N  IN  M+   +        D
Sbjct: 241 GGNSEIARLTS---IEQEPFYQIEGLNLRFAPTDFIQVNDEINSQMVAQAIEWLDLSPED 297

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+L+CG GNF+L +A+    V+ +E     VE A+ N   N + N             
Sbjct: 298 RVLDLFCGMGNFTLPIAKRVSEVVGIEGVPALVEMAKKNAKLNQLGNAHFWHADLSADFS 357

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCR 330
           AM   +E             F  + +DP R+G  +    +V+     I+Y+SCNP +L R
Sbjct: 358 AMSWSKE------------GFNKVLLDPARAGALEVMSHIVKLSAEKIVYVSCNPTTLAR 405

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   +L + + +  L + D FP T H+E      RK
Sbjct: 406 DSKILLDSGYQLTGLKMLDMFPQTGHLESMAQFSRK 441


>gi|262404764|ref|ZP_06081319.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC586]
 gi|262349796|gb|EEY98934.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Vibrio sp. RC586]
          Length = 440

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 30/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGD-- 56
              L       Q+  K   L Q+M+ F   +L +     S+   YR RA   +  D    
Sbjct: 90  GCDLQHLDRAGQINHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQ 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      +Q+K  + + +       +NAL+ E+  T+  +     +L  ++ +   + +
Sbjct: 150 QLQFGFRRKQSKAIVNVTHCPVLEPSLNALLPEL-NTLLSQWCQPEQLGHVELVKGDNAR 208

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +      R +     +   RL D     +  + L   A   +         E     G 
Sbjct: 209 VLAL----RHVGALTEQDQQRLTDFASQNQLTLYLALEAGTLQHVQGEPPYCEE---TGS 261

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
            L +  + + F Q N  +N  M+E  L       Q  +L+L+CG GNF+L LA+    V+
Sbjct: 262 RLSF--LPSHFIQVNRAVNQKMVEQALHWLEVSEQDRVLDLFCGLGNFTLPLAKQAQEVV 319

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE  +  V+ A +N   N +NNV   + + ++             +        +F  +
Sbjct: 320 GVEGVEEMVQHATHNAKLNQINNVTFYQANLEQ------------DMTTASWAQQKFAKV 367

Query: 296 FVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYT 353
            +DP R+G +     +       ++Y+SCNP +L RD  S+LS    +E+L + D FP+T
Sbjct: 368 LLDPARAGAEGIVEQLAALGAERVVYVSCNPATLARDSQSLLSQGFCLEKLGMLDMFPHT 427

Query: 354 RHMECGVLLVRK 365
            H+E   L V+K
Sbjct: 428 SHLESMALFVKK 439


>gi|238758179|ref|ZP_04619358.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia aldovae ATCC
           35236]
 gi|238703509|gb|EEP96047.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia aldovae ATCC
           35236]
          Length = 425

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 73/365 (20%), Positives = 139/365 (38%), Gaps = 32/365 (8%)

Query: 12  QQLAE--KVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            QL    K D L +++      ++    +       YR RA   + +        M   +
Sbjct: 79  AQLQRNSKADALTRLVARETGAHVKLEPVICGPEYGYRRRARLALMYQPKQQRLQMGFHR 138

Query: 67  T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           T     + I +       +  L+  +   +     +R +L  ++ + + +   +V     
Sbjct: 139 TESHNVVSIKHCPVLRPELEHLLQPLYQCLSELKAVR-RLGHVELVLADNGPLLVL---- 193

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD         L +     +  + L   ++  +  +  D            L      
Sbjct: 194 RHLDTLNEVDRKALTEFAKREQIAVYLAANSDSLEKLIGEDP-----YYQIDGLRLAFHP 248

Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+  V+          +L+L+CG GNF+L LAR    V+ VE     
Sbjct: 249 RDFIQVNDVVNQQMVAQVIEWLEVEPHERVLDLFCGMGNFTLPLARRARNVVGVEGVAAL 308

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   +YN   N + NV     + +            + +      +  F  + +DP R+G
Sbjct: 309 VANGQYNALTNGLANVSFFHENLE------------SDISRQPWAAQGFDKVLLDPARAG 356

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
                  +V+  P  ++Y+SCNP +L RD   +L+  + + ++ + D FP+T H+E   L
Sbjct: 357 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416

Query: 362 LVRKP 366
            +++P
Sbjct: 417 FMQEP 421


>gi|14590965|ref|NP_143040.1| RNA methyltransferase [Pyrococcus horikoshii OT3]
 gi|50401321|sp|O58864|Y1137_PYRHO RecName: Full=Uncharacterized RNA methyltransferase PH1137
 gi|3257554|dbj|BAA30237.1| 407aa long hypothetical RNA methyltransferase [Pyrococcus
           horikoshii OT3]
          Length = 407

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 150/380 (39%), Gaps = 62/380 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
             +L    Y+ QL  K +R+R+++      ++++  S     +R R +  +  +G     
Sbjct: 69  GCSLQHLSYDYQLEFKGERIRRLLG----VDVEVIPSPRIFGHRNRIDLAVTVEG----- 119

Query: 61  IMFDQQTK--ERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQI 107
           I F ++ K  + + I                    I    I +    + E  LR  + + 
Sbjct: 120 IGFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERISVWNVKKDEGFLRYMVLRE 179

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDR 164
              T +    +VT        +       +  D   +  + +          + +    R
Sbjct: 180 GKFTGEVMVNLVT-------KEGKLPDPSKYFDFATSIYWSVNRTKSDVSYGEVESVWGR 232

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           +++ E+L      +IY    NSF Q N+   V++++ V    +G    +L++Y G G F 
Sbjct: 233 EFITEKL----DDVIYLIHPNSFFQTNSYQAVNLVKKVSELVEGE--RVLDMYSGVGTFG 286

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           + LA+   +V+  +  + ++E AR N   N V+ V                   F+   D
Sbjct: 287 IYLAKRGFKVVGFDSNEFAIEMARKNAKINKVDAV-------------------FDVATD 327

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIE 342
            ++    F T+ VDPPR GL    +  +       I+Y+SCNP +  RD+  L   + I+
Sbjct: 328 REVEVNGFDTVIVDPPRVGLHPKLIKKLNREKPEVIVYVSCNPKTFARDIEKLE--YKID 385

Query: 343 RLALFDQFPYTRHMECGVLL 362
            +   D FP+T H+E    L
Sbjct: 386 EIVALDMFPHTPHLELVAKL 405


>gi|221632250|ref|YP_002521471.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermomicrobium roseum
           DSM 5159]
 gi|221157158|gb|ACM06285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermomicrobium roseum
           DSM 5159]
          Length = 406

 Score =  219 bits (558), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 130/371 (35%), Gaps = 67/371 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPN--LQIFRSEPIHYRMRAEFHIWHDGD 56
                  +YE QL  K   +RQ +     F  P     +   +P  YR  A F +   G+
Sbjct: 88  GCQWQHIRYEYQLVLKQAVVRQQLRRIGKFDDPPVLPTVPSPQPYGYRNHARFSVDGKGN 147

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
             Y           +RID  +     IN ++  +     ++      + +    T +   
Sbjct: 148 LGYISRPGHGY-RFLRIDRCLIMHPAINEVLRRLQERAHVK---HQLMVRYGVNTGE--- 200

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            ++       +D                               I   +    E L     
Sbjct: 201 -LLVHPDVSAIDP-----------------------------TIPSGQPAYHESLL---- 226

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235
              +R   +SF Q N  +   +++ VL        +++ + Y G G F+  LA    RV+
Sbjct: 227 GHRFRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVVDAYAGVGTFAAFLAPRVARVI 286

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E +  +V  A+ N+  +  +NV+ V+   +     +               + R   +
Sbjct: 287 GIEESPSAVSDAQVNL--DPFDNVEYVQAKVEHVLGKL---------------AVRPDVV 329

Query: 296 FVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPR G     +   ++   P ++Y+SC+P +L RDL  L    + +  +   D FP 
Sbjct: 330 ILDPPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTPLDMFPQ 389

Query: 353 TRHMECGVLLV 363
           T H+E    L 
Sbjct: 390 TYHIESVATLE 400


>gi|304399230|ref|ZP_07381097.1| RNA methyltransferase, TrmA family [Pantoea sp. aB]
 gi|304353284|gb|EFM17664.1| RNA methyltransferase, TrmA family [Pantoea sp. aB]
          Length = 438

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 158/368 (42%), Gaps = 46/368 (12%)

Query: 13  QLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQQ-T 67
           Q   K   L +M+    +  V   ++   +P  YR RA   + W +      + F Q+ +
Sbjct: 100 QQQSKAQALSRMLSQAASQSVAVDEVIAGQPWGYRRRARLGLQWQNKAQRLQMGFRQEAS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + I +       + AL++ +   +     +R +L  ++ + + +   ++        
Sbjct: 160 NDLVDIQHCPVLVPELEALLVPLHQCLSDLRAVR-RLGHVELVLADNGPLMI-------- 210

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI---- 183
                   +R  DALH    + +L   ++K ++ L  D  DE LT    ++ +       
Sbjct: 211 --------LRHLDALHTDDRE-KLEQFSHKHQLMLFLDAGDENLTALSESMPFYHSHQLK 261

Query: 184 ----ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
                  F Q N G+N  M+   +A       D +L+L+CG GNF+L +      V+ VE
Sbjct: 262 LTFNPQDFIQVNDGVNQQMVAKAIAWLDLQPEDRVLDLFCGMGNFTLPVGIFVQNVVGVE 321

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                V  A YN   N++ NV   + + +E             +      +  F  + +D
Sbjct: 322 GIAALVRQAAYNADLNNLKNVSFFQHNLEE------------EVSRQPWATQGFNKVLLD 369

Query: 299 PPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356
           P R+G       +V+  P  ++Y+SCNP +L RD   +LS  + +ER+A+ D FP+TRH+
Sbjct: 370 PARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDSQILLSAGYQLERVAMLDMFPHTRHL 429

Query: 357 ECGVLLVR 364
           E  VL  +
Sbjct: 430 ESMVLFRK 437


>gi|83719402|ref|YP_442750.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           thailandensis E264]
 gi|83653227|gb|ABC37290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           thailandensis E264]
          Length = 498

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 136/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 134 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 193

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 194 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGSQV 252

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R+L+         LR+   A + Q  L  +   T        V    T+  
Sbjct: 253 TALVL----RVLEPINAADETLLREFADAHRVQFWLQPKGPDTVAPFYPLDVQLDYTLPE 308

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V
Sbjct: 309 FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREV 368

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+              +      F    D       F  
Sbjct: 369 VGIEGSETLTSRALANAKENGVDGHT-----------SFASRNLFEVTADDLHALGAFDK 417

Query: 295 IFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERL 344
             VDPPR G      A   + Q+        I+Y+SCNP +L RD  +L     + ++  
Sbjct: 418 FLVDPPREGALAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGA 477

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP+T H+E   L  R
Sbjct: 478 GVVNMFPHTSHVESIALFER 497


>gi|309774722|ref|ZP_07669745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917495|gb|EFP63212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 436

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 149/380 (39%), Gaps = 34/380 (8%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEP-IHYRMRAEFHIWHDGDD 57
             L+I +Y  QL  K D L+Q ++ +   +     ++  SE    YR + +     +   
Sbjct: 74  CPLMIARYPAQLEYKQDLLKQSLIKYAQIDPRKVAKVKASEQVFGYRNQFKLPCAMEEGR 133

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLT 111
           L   +F   +   + +         +  + +++M  +        +P  +  +  +    
Sbjct: 134 LVSGLFMPNSNYFIDVKRCWIHEDGLERIRMDIMRVLNAHGCESYQPHDKKGIRNLVVRG 193

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---- 167
            +       +  +  L+++     +R++          Q I    KT        +    
Sbjct: 194 FEGRYQCTIVTGNDELNESLIADLMRIKGVC----SLWQSIHTVKKTPEVFGNKMIHLAG 249

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           D  L +    L  +    SF Q N+   V +   + +  K     ++E Y G G  SL L
Sbjct: 250 DTSLALTFDGLQLQISPRSFFQLNSAQAVQLYRTIASMVKEGNELIVEAYSGIGAISLYL 309

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                 ++ +E  K +V  A  N   N   +V  +   +      + ++R          
Sbjct: 310 KDKAKEIIGIESIKDAVVNANQNAKLNGCGHVSFLCDDAASKLTYLSKKRAI-------- 361

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
                  + VDPPRSGLDDA +  +      +I+Y+SCNP +L ++L++L   + +E++ 
Sbjct: 362 -----DVLVVDPPRSGLDDAMLDCILRSKIKNIVYVSCNPATLGKNLAVLGYRYNVEKIQ 416

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D FP+T ++E  V L RK
Sbjct: 417 PIDMFPHTPYVEAVVSLKRK 436


>gi|242398439|ref|YP_002993863.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM
           739]
 gi|242264832|gb|ACS89514.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM
           739]
          Length = 419

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 140/376 (37%), Gaps = 42/376 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH-YRMRAEFHIWHDGDDLYH 60
              L    YE+QL  K  +L +++      N+++  S  I+ YR R +  I   G     
Sbjct: 73  GCLLQHIPYEEQLKFKEQKLSELLE----MNVEVLPSPKIYDYRNRIDVAITTGGIGFRR 128

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYLTS 112
                   +      F   S      + +++  + L P         LR  + +    T 
Sbjct: 129 RGTWWDVIDVKNCRIFGDKSEKALRSVKDLIEDLNLVPWDLKKSNGFLRYVVLREGKFTG 188

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
           +    +VT      L     E          +       +      +     +++ E++ 
Sbjct: 189 EFMVNLVT--SEGTLSKEVTEYFDFATSLYWSVNSTKSDVSYGAP-RRFWGAEFIREKI- 244

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                + Y    NSF Q N+   V++++ V    +G +  +L+LY G G F + LAR   
Sbjct: 245 ---DDVTYLIHPNSFFQTNSYQAVNLVKKVGDFVEGEK--VLDLYSGVGTFGIYLARRGF 299

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V  +E+   +VE A  N   N V N +      +E                       +
Sbjct: 300 KVEGIEVNPFAVEMANRNARINEV-NAEFKVGEDREVRDL-----------------GVY 341

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
            T+ VDPPR+GL    +  +   P   ++Y+SCNP +   +L  L   + IE +   D F
Sbjct: 342 DTLIVDPPRAGLHPKLIKKLLKDPPETLVYVSCNPRTFSENLKKLKEGYAIEEIVALDMF 401

Query: 351 PYTRHMECGVLLVRKP 366
           P+T H+E    L  K 
Sbjct: 402 PHTPHIEIVAKLDLKN 417


>gi|195953997|ref|YP_002122287.1| RNA methyltransferase, TrmA family [Hydrogenobaculum sp. Y04AAS1]
 gi|195933609|gb|ACG58309.1| RNA methyltransferase, TrmA family [Hydrogenobaculum sp. Y04AAS1]
          Length = 415

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 148/373 (39%), Gaps = 43/373 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
                   Y +QL +K + L++ +       ++    I   EP HYR R +F + +    
Sbjct: 73  GCHFQHIDYTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRNRVKFKVRNKELG 132

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-TIRLEPLLRAKLFQIDYLTSQSDQ 116
              +  D      +++++    S  IN LM  +        P   +  +     +    +
Sbjct: 133 FVGVDEDF-----VKVEHCPISSKAINDLMPFLKEFAKHFNPSWISVFY-----SDTQKE 182

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--TKICL--DRDYVDERLT 172
            +V    +  +D   +E   + ++ L  +      + + +K   KI L     +    L 
Sbjct: 183 YMVKFASYDYID---KEKLKKFKEHLTPKNVVGITLVKDDKREDKIILSIGTPFTFIELL 239

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                + YR   NSF Q N  +   +L+ +L         +L+ Y G G F L LAR   
Sbjct: 240 ----KIKYRISVNSFFQVNIKVAQKLLQTLLEKENYFD-RVLDDYGGVGLFGLHLARRSG 294

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V   +I K S+  A Y+   N++NNV     +S  F +    +                
Sbjct: 295 SVDIADINKSSINDAEYSAKINNINNVSFYVQNSYVFLKKSLYK--------------HA 340

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
             + +DPPRSGL    +G++       I YISC P SL RDL +L   + I+ + + D F
Sbjct: 341 NLLVLDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLKLLGKKYQIKEIYMADMF 400

Query: 351 PYTRHMECGVLLV 363
           P T H+E  V L 
Sbjct: 401 PQTYHIETAVKLE 413


>gi|261856300|ref|YP_003263583.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Halothiobacillus
           neapolitanus c2]
 gi|261836769|gb|ACX96536.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Halothiobacillus
           neapolitanus c2]
          Length = 379

 Score =  219 bits (557), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 144/392 (36%), Gaps = 56/392 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S   L D Y  QL  K+ R +  +       L I  S    +R +A+  +  D       
Sbjct: 13  SCGWLADPYADQLQRKMARCQSALTGLGGVWLPIVPSAETAFRNKAKMVVCGDASSPCLG 72

Query: 62  MFDQQTKERMRIDYFM-----------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
           + D    + + +               P   +I  L I      + +  L+  L  +   
Sbjct: 73  ILDADD-DGIDLSNCPLYPTAITEAFEPLKQMIRRLGIPPYDVKKRQGELKYLLITV--- 128

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA--------------RKYQIQLIGRAN 156
            S+ D +++  +  R   D W E   RLR  L                 +   Q I    
Sbjct: 129 -SEDDDSLMVRLVLR--SDIWIE---RLRADLSTLTADLPHLAVLSVNIQPVHQAILEGE 182

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215
           +  I  DR    E LTV    L +     SF Q N  +   +     +    +    + +
Sbjct: 183 QEVILTDR----ETLTVHLNGLPFHLRPKSFFQTNTRVAEQLYATARSWVAEVAPVHMWD 238

Query: 216 LYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           L+CG G F+L  A     +V  +EI+  ++ +A+ +     + NV    + + EF     
Sbjct: 239 LFCGVGGFALHCADVIPGQVTGIEISAEAIASAQQSALELGLKNVSFHALGANEFIDQAV 298

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
              +   L            + V+PPR GL       +       ++Y SCNP+SL RDL
Sbjct: 299 SLPQMPAL------------VVVNPPRRGLGVGLCAFLDESVVQTVIYSSCNPESLARDL 346

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            ++     + +  +FD FP+T H E   +LVR
Sbjct: 347 VMM-PGFELVKAQVFDLFPHTAHSEVLAMLVR 377


>gi|91792550|ref|YP_562201.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella
           denitrificans OS217]
 gi|123166314|sp|Q12PZ8|RUMA_SHEDO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|91714552|gb|ABE54478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella
           denitrificans OS217]
          Length = 468

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 159/394 (40%), Gaps = 51/394 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQI----FRSEPIHYRMRAEFHIWHD 54
              L     + Q   K   L ++M+ F    V + Q+      S P HYR RA    + +
Sbjct: 91  GCDLQHLALDAQQNHKQQSLNELMVKFSGSPVIDPQVQAAPLVSPPWHYRRRARLATYFN 150

Query: 55  GDDLYH--IMFDQQTKERMRIDYFM----PGSLLINALMIEMMATIRLEPLLRAKLFQID 108
            +D           +K+ + I        P S LIN   + +        L   +L Q D
Sbjct: 151 NNDKSLKLGFRALSSKQIVPIKQCPVLAEPLSALINPFSLLLARLKAKASLGHLELTQAD 210

Query: 109 YLT-----------SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             T           +   +A+ +    + ++   ++ +  L D +     + +   +  +
Sbjct: 211 NGTFAVLRVTKVLPAADIRALASFALTQGINLLLQDDSGALTDVMTMAPAEDEGATQVEQ 270

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
           + + L     +  L+    +  +     +F Q NA +N  M+E  +       G+ +L+L
Sbjct: 271 SALTLP----EYALSQGQVSCQF--TPGNFVQVNAEVNQRMVEQAVNWLDLQVGERVLDL 324

Query: 217 YCGNGNFSLVLARHFD-----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +CG GNFSL LA          V+ VE     V+ AR N   N++ N+          + 
Sbjct: 325 FCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNLANLSFYHAD---LSA 381

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCR 330
            +  E+   ++            + +DP R+G  ++   + +  P  ++Y+SCNP SL R
Sbjct: 382 DLSNEKWLGKI----------DKLLLDPARAGAFESLQWLQKMKPKKVVYVSCNPASLAR 431

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           D S +LS  + +++L++ D FP T H+E   L  
Sbjct: 432 DSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALFE 465


>gi|186475730|ref|YP_001857200.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia phymatum
           STM815]
 gi|184192189|gb|ACC70154.1| RNA methyltransferase, TrmA family [Burkholderia phymatum STM815]
          Length = 473

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 146/383 (38%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   ++       + +FR        YR RA   + H    
Sbjct: 109 GCSMQHLDVRAQIAVKGRVLEDNLMHLARLRPETVFRPIHGPSWGYRYRARLTVRHVAKK 168

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++ +++ +   +     +R ++ QI+     S 
Sbjct: 169 GGVLVGFHERKSSYVADMTSCEVLPPHVSDMLVPLRHMVEAL-SIRDRMPQIELAVGASV 227

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            A+V     R+L+         LRD   LH  ++ +Q  G  +          +D  L  
Sbjct: 228 TALVL----RILEPINAADEQLLRDFADLHNVQFWLQPKGPDSVYPFYPLDRQLDYTLPE 283

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + +R     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 284 FGIRMPFR--PTDFTQVNHQINRVLVGRALRLLAPAKTDRVLDLFCGIGNFTLPLARISR 341

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E ++     A  N   N V+ +      +  E T    R                
Sbjct: 342 EVVGIEGSEVLTSRALDNAKENGVDSHTSFACRNLFEVTADDIRAL------------GH 389

Query: 292 FKTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTI 341
           F    +DPPR G      A   + Q+        I+Y+SCNP +L RD  +L     + +
Sbjct: 390 FDKYLIDPPREGALAVSKALADIAQSGEGRLPTRIVYVSCNPATLARDAGLLVHEAGYRL 449

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 450 KGAGVVNMFPHTSHVESIALFER 472


>gi|260890184|ref|ZP_05901447.1| hypothetical protein GCWU000323_01346 [Leptotrichia hofstadii
           F0254]
 gi|260860207|gb|EEX74707.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii
           F0254]
          Length = 476

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 66/402 (16%), Positives = 156/402 (38%), Gaps = 58/402 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
                + +YE+QL  K   L +++      +L        I   + I+YR +     +  
Sbjct: 87  GCDFGMLKYEKQLEYKDKMLEEVLTKIAEIDLKKVKISKIIGSDKKINYRNKTAEPFFKK 146

Query: 55  GDDLYHIMFDQQTKERMRIDYFM----PGSLLINALMIEMMATIRLEPLLR--------A 102
              +    + +++         +       ++I+  + ++ +    +   +         
Sbjct: 147 NGIIQTGFYSRKSHNVFSAKESLLKSEIAKIIIDKFLQKVNSFAGTKKEFKVFNEVNNTG 206

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIG 153
            L QI    ++ D+ ++ ++ ++          L++ + E    ++    + K +   + 
Sbjct: 207 FLKQIMIRNNEKDEVMIVVVVNKNSQYNQLSKVLEEMYDENDC-IKSIYISVKTEQNNVI 265

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
              K        Y++E +      L ++   NSF Q N    + + +  +        + 
Sbjct: 266 LG-KNVHLFGSQYLEEEM----EGLKFKIYPNSFFQINKKQALKLYDVAINFLNEENKNT 320

Query: 213 -------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                  +++ + G G  +++L+++  +V+ +E  + S  AA+     N + NV+ V   
Sbjct: 321 DKIYEKTVIDAFSGTGTIAMMLSKNIKKVIGIESVESSTLAAKLTSYENSIQNVEFVNGK 380

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
            ++    + +  +                I  DPPR G++++ +  V       I+YISC
Sbjct: 381 VEKELPKILKREDVG-------------AIVFDPPRRGIEESALKSVVQNKIEKIVYISC 427

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           NP +  RD+ IL+   + + ++   D FP T H+E   LL +
Sbjct: 428 NPATFARDVKILAENGYVLTKVTPVDMFPQTPHIEVVGLLYK 469


>gi|116074874|ref|ZP_01472135.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. RS9916]
 gi|116068096|gb|EAU73849.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. RS9916]
          Length = 458

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 141/391 (36%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHDG- 55
             TL       Q A K  +L++ +         +       ++P+ YR RA   +  D  
Sbjct: 86  GCTLQHLADASQTAWKQQQLQKALSRIGGIEAPVGALLKSDAKPLGYRNRALIPLHRDAE 145

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKL 104
             L    + + +   + +++       ++AL+  +   ++               LR   
Sbjct: 146 GKLRMGYYRRGSHRIVNLNHCPVLDPRLDALLEPIKHDLQASEWPADADLHSGEGLRHLG 205

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            ++   T +    +V+    L     L   W E    +R      + Q       + T++
Sbjct: 206 LRLGARTGEVLITLVSSTADLPGLHALAKQWCERWSEVRGVTLNLQPQRNNRVLGDDTQL 265

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
                 ++ER       L       +F Q N       ++ +        G   +++ YC
Sbjct: 266 LSGEGQIEERFADVSLML----GTTTFFQINTLQAEAAVKHLSQWLLDRAGTTTVIDAYC 321

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G  +L LA    +VL +E+ K SV+  R N A N +  V+      K          E
Sbjct: 322 GIGTIALPLAAQGHQVLGLELHKASVDQGRLNAARNRLEQVRFKAGDVKALLADALPSHE 381

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                           + VDPPR GLD   V  +   P   + Y+SC+P +L RDL  L 
Sbjct: 382 ---------------ALVVDPPRKGLDADVVDQILECPPRWMAYLSCDPATLSRDLKRLC 426

Query: 337 ---TTHTIERLALFDQFPYTRHMECGVLLVR 364
                + +E +   D FP T H+E  VL+ R
Sbjct: 427 VPQGPYEVEGIHPVDFFPQTTHLESLVLMKR 457


>gi|222100448|ref|YP_002535016.1| RNA methyltransferase, TrmA family [Thermotoga neapolitana DSM
           4359]
 gi|221572838|gb|ACM23650.1| RNA methyltransferase, TrmA family [Thermotoga neapolitana DSM
           4359]
          Length = 439

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 154/385 (40%), Gaps = 46/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57
               +  +YE+QL  K + +  +    ++ ++++   EP     HYR + EFH+      
Sbjct: 76  GCHWMDIRYEKQLLYKKEIVEDLFERMKL-DVEVEDVEPSDLVFHYRTKMEFHL----QG 130

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               +  + +   + I                    +  L I +   +  + +L+  + +
Sbjct: 131 KRLGLKRRGSDFVIDIRSCEVAPEGTGEILEIVRKAVQVLNIPVYNRLTRKGVLKHVVIR 190

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             + T Q     VT    +     W +  ++       + + I  +  +  + +      
Sbjct: 191 YAFSTDQLMVIFVT----KTESFPWGKSLVQAILKDIPKVHSIIHVMNSKDSVVLRGPYR 246

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
             Y +  +        ++    +F Q N  +   +++ V         ++ L+LY G G 
Sbjct: 247 TLYGEGVIVEEFDWEKFQIPPTAFFQSNYSVTSKLIDHVYRELDLQGNEVVLDLYAGIGT 306

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           FS+  +    RV+AVE ++ +V+A + N   N   N++ +     +F ++ +        
Sbjct: 307 FSMRTSYSSARVIAVESSRVAVKAGKANANVNGRRNIEYIESDVLDFLKSYQG------- 359

Query: 283 KDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCRDLSILS-TTH 339
                   R   + +DPPRSG   D    +++  P  ++Y+SC P +L RD+  L    +
Sbjct: 360 --------RADKVILDPPRSGAGLDVMKEILRLSPERVVYVSCEPSTLVRDVQFLQNEGY 411

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
           ++ R+  FD FP T H+E  V LV+
Sbjct: 412 SVVRVKPFDMFPQTYHVETVVTLVK 436


>gi|121996838|ref|YP_001001625.1| 23S rRNA 5-methyluridine methyltransferase [Halorhodospira
           halophila SL1]
 gi|121588243|gb|ABM60823.1| 23S rRNA m(5)U-1939 methyltransferase [Halorhodospira halophila
           SL1]
          Length = 434

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 137/376 (36%), Gaps = 34/376 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L     E Q+A K   L + +        +            YR +A   + H    
Sbjct: 79  GCALQHLPAEAQIAHKERVLAEQLQRIGGVEPEQWLAPLTGPAWGYRRKARLAVKHVPKK 138

Query: 58  LYHIMFDQQTKERM--RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              ++  ++    +   ++Y       +   M  + A +     +  ++ QI+       
Sbjct: 139 GGVLVGFREKHSPLVAPVEYCPVLDPRVGERMQGL-AELVGSLSIPDRIPQIEVACGDKH 197

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD---RDYVDERLT 172
            A+V     R L     +   RL D   A    I        T   +       +   L+
Sbjct: 198 AALV----FRHLAPLTEDDLDRLSDFAEATGLTILRQPGDESTVTPVAPQPAPQLSYALS 253

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
             G  + +  +   FTQ NA IN+ M+E  L   +   G  +L+L+CG GNF+L LAR  
Sbjct: 254 PYGVEVAF--LPTDFTQVNASINMAMVERALEWLQPQSGRRILDLFCGVGNFTLPLAREG 311

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V  +E     VE A  N AAN ++          +F  A     E  R       +  
Sbjct: 312 ATVTGIEGDPRLVERAEENAAANGLH---------ADFAVADLATEEGTRR-----VAGG 357

Query: 292 FKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348
           F  + +DPPRSG  +    +       ++Y SC P +L RD  IL       +    + D
Sbjct: 358 FDAVLLDPPRSGAQEVLSAVAGTGARRVVYCSCGPATLARDAGILVAEHGFRLNAAGIMD 417

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   +  R
Sbjct: 418 MFPHTAHVESFAVFDR 433


>gi|260889091|ref|ZP_05900354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii
           F0254]
 gi|260861151|gb|EEX75651.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia hofstadii
           F0254]
          Length = 476

 Score =  218 bits (556), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 71/395 (17%), Positives = 142/395 (35%), Gaps = 56/395 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIW--HDGDDLYHIMF 63
           Y++QL  K   +++ +        +    +   +P  YR + EF       G  +   + 
Sbjct: 95  YDEQLEIKAGHIKKELDKIIKYDYIFEEPVRSVKPNKYRNKMEFSFGNATKGGPIILGLH 154

Query: 64  DQQT-KERMRID-----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
            Q +  + + +D            ++  +        +    +      R  + +    T
Sbjct: 155 KQNSFHDIVEVDGLKLMDDNFNKIYVFCNEFCKKTGFDFYHRLDHIGFFRNLVIRKAEFT 214

Query: 112 SQSDQAIVTLIYHRLLDDAWRE-------------CAIRLRDALHARKYQIQLIGRANKT 158
            Q    IVT      ++    +                ++   LH        +  +   
Sbjct: 215 KQILVNIVTTTQISEMEKEKFQKEFKEGLLALNLDDNFKIIGILHTFNDNFSDMVISESE 274

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG------D 212
            I     Y +  LT     L ++    SF Q N+     +   VL   + I+        
Sbjct: 275 TIL----YGERDLTEEIFGLKFKISPYSFFQTNSQTVEKLYGKVLTYLEEIENIKIHEVT 330

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G    ++++   +V  +E+   +VE A  N   N++ N   +          
Sbjct: 331 VFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDV------ 384

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
                 F +L + D +      + +DPPR+G+ + T+  +  Y   +I+Y+SCNP +L  
Sbjct: 385 ------FAKLDEFDNNGINPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKTLMT 438

Query: 331 DLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           DL       + + R ++ D FP T H+E   LL +
Sbjct: 439 DLMKFEEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473


>gi|167619816|ref|ZP_02388447.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           thailandensis Bt4]
 gi|257138961|ref|ZP_05587223.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           thailandensis E264]
 gi|143580771|sp|Q2SWE9|RUMA_BURTA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 465

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 136/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGSQV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R+L+         LR+   A + Q  L  +   T        V    T+  
Sbjct: 220 TALVL----RVLEPINAADETLLREFADAHRVQFWLQPKGPDTVAPFYPLDVQLDYTLPE 275

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V
Sbjct: 276 FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREV 335

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+              +      F    D       F  
Sbjct: 336 VGIEGSETLTSRALANAKENGVDGHT-----------SFASRNLFEVTADDLHALGAFDK 384

Query: 295 IFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERL 344
             VDPPR G      A   + Q+        I+Y+SCNP +L RD  +L     + ++  
Sbjct: 385 FLVDPPREGALAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP+T H+E   L  R
Sbjct: 445 GVVNMFPHTSHVESIALFER 464


>gi|15643851|ref|NP_228900.1| RNA methyltransferase, putative [Thermotoga maritima MSB8]
 gi|50401706|sp|Q9X0H9|Y1094_THEMA RecName: Full=Uncharacterized RNA methyltransferase TM_1094
 gi|4981638|gb|AAD36170.1|AE001768_19 RNA methyltransferase, putative [Thermotoga maritima MSB8]
          Length = 439

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 147/385 (38%), Gaps = 46/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57
               +  +YE QL  K + L  +     +  +++   EP     HYR + EFH       
Sbjct: 76  GCHWMDVKYETQLRYKKEVLIDLFERSNLK-VEVEDVEPSDLVFHYRTKMEFHF----QG 130

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               +  + +   + I                    +  L + +      + +L+  + +
Sbjct: 131 RKLGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRKGVLKHLVIR 190

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             + T Q     VT    +     W    +R       + + I  +  +  + +      
Sbjct: 191 YAFSTDQFMVIFVT----KTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYK 246

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
             Y +  +        ++    +F Q N  I   +++ V         ++ L+LY G G 
Sbjct: 247 TLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVVLDLYAGIGT 306

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           FS+  +    RV++VE ++ +V+A + N   N   N++ V     +F +           
Sbjct: 307 FSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKNY--------- 357

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTH 339
                 S R   I +DPPRSG     +  +   +   I+Y+SC+P +L RDL +L    +
Sbjct: 358 ------SGRADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGY 411

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
           +I R+  FD FP T H+E  V LV+
Sbjct: 412 SIVRVKPFDMFPQTYHVETAVTLVK 436


>gi|148270770|ref|YP_001245230.1| RNA methyltransferase [Thermotoga petrophila RKU-1]
 gi|147736314|gb|ABQ47654.1| RNA methyltransferase, TrmA family [Thermotoga petrophila RKU-1]
          Length = 439

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 146/385 (37%), Gaps = 46/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57
               +  +YE QL  K + L  +     +   ++   EP     HYR + EFH       
Sbjct: 76  GCHWMDVKYETQLRYKKEVLLDLFERSNLKA-EVEDVEPSDLVFHYRTKMEFHF----QG 130

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               +  + +   + I                    +  L + +      + +L+  + +
Sbjct: 131 RKLGLKKRDSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETKKGVLKHLVIR 190

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             + T Q     VT    +     W +  +R       + + I  +  +  + +      
Sbjct: 191 YAFSTDQFMVIFVT----KTESFPWEKDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYR 246

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGN 222
             Y +  +        ++    +F Q N  +   +++ V         ++L +LY G G 
Sbjct: 247 TLYGEGVIVEEFDWERFQIPPTAFFQSNYSVTSKLIDHVYRELALQGNEVLLDLYAGIGT 306

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           FS+  +    RV++VE ++ +V+A + N   N   N++ V     +F +           
Sbjct: 307 FSVRASFSAARVISVESSRVAVKAGKANANINSRRNIEYVEQDVLDFLKNY--------- 357

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTH 339
                 S R   I +DPPRSG     V  +   +   I+Y+SC P +L RDL +L    +
Sbjct: 358 ------SGRADRIILDPPRSGAGPEVVKEIVRLSPERIVYVSCEPSTLARDLKVLVENGY 411

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
           +I R+  FD FP T H+E  V LV+
Sbjct: 412 SILRVKPFDMFPQTYHVETAVTLVK 436


>gi|124266449|ref|YP_001020453.1| 23S rRNA 5-methyluridine methyltransferase [Methylibium
           petroleiphilum PM1]
 gi|124259224|gb|ABM94218.1| putative 23S rRNA (uracil-5-)-methyltransferase [Methylibium
           petroleiphilum PM1]
          Length = 454

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 147/380 (38%), Gaps = 39/380 (10%)

Query: 12  QQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L   +           L+        YR RA   + H      +     ++
Sbjct: 89  AQVAVKQRVLEDNLWHLGKVKAGQMLRPIEGPTWGYRYRARLSVRHVVKKGKVLIGFHER 148

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     +         ++A+++ + A I      R +L QI+    ++   +VT +  R
Sbjct: 149 KSSYVADMSRCEILPPHLSAMLLPLRALIAAMD-GRDRLPQIEVAIGEAPDGLVTALVLR 207

Query: 126 LLDDAWRECAIRLR--DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
            L+    +   RLR   A H  ++ +Q  G     ++      +   L   G  + ++  
Sbjct: 208 HLEPLSADDLQRLRAFGAEHGVQWWLQPKGPDTVQRLDDGGPQLAYTLPEYGVVMPFK-- 265

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
              FTQ N  IN  ++   L     +QGD  +++ +CG GNF+L LA     VL +E ++
Sbjct: 266 PTDFTQVNHAINRALVVRALRL-LAVQGDERVIDWFCGLGNFTLPLATQAREVLGIEGSE 324

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             V  +R N A N +++    R  ++           F  L    +         VDPPR
Sbjct: 325 ALVARSRDNAALNGLSHKT--RFDARNL---------FELLPADLVAYGSATKWLVDPPR 373

Query: 302 SG---LDDATVGMVQAYP---------HILYISCNPDSLCRDLSIL--STTHTIERLALF 347
            G   L  A    VQ             I+Y+SCNP +L RD  +L     +   +    
Sbjct: 374 EGAFALAKAVADAVQDPGQAPGWVPPARIVYVSCNPATLARDAGLLVHQAGYRCVQAGAV 433

Query: 348 DQFPYTRHMECGVLLVRKPS 367
           + FP+T H+E   +  R  S
Sbjct: 434 NMFPHTAHVESIAVFDRNAS 453


>gi|41614849|ref|NP_963347.1| hypothetical protein NEQ053 [Nanoarchaeum equitans Kin4-M]
 gi|51316718|sp|Q74N58|Y053_NANEQ RecName: Full=Uncharacterized RNA methyltransferase NEQ053
 gi|40068573|gb|AAR38908.1| NEQ053 [Nanoarchaeum equitans Kin4-M]
          Length = 447

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 161/381 (42%), Gaps = 50/381 (13%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIW-----HDG 55
            G L  +  Y+ QL  K   +  +   F      I   + I+YR R ++ I+      + 
Sbjct: 94  GGCLWGLMDYQYQLEFKKKVIENL---FGYDKDIIPSPKTIYYRNRMDYPIYNKVSLKEP 150

Query: 56  DDLYHIMFDQQTK-----ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
              Y  +  ++ K       + I+ F   +  I    I    T++    LR  + +    
Sbjct: 151 GKWYGYIPIKECKMLSKEAEIIINEF---NKFIEKYKIPSWDTVKHTGFLRYLVIREGKF 207

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKICLDRDY 166
           T +    I+T    +  ++ W +    ++D + +  + I+     +  + K        +
Sbjct: 208 TKERMIHIIT-YKRKKFEELW-DFIENIKDLVTSVYWGIREDLGDVSISEKLYHYYGSKF 265

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
           + ER+      + Y    NSF Q N+   V++++ V    +  + D+ L+LY G G FSL
Sbjct: 266 LRERIL----DIEYYISPNSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYSGVGLFSL 321

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A    +V+ +EI + +VE A+ N + N+++  + +    ++                 
Sbjct: 322 QIANEVKKVIGIEIVEEAVEMAKLNASINNID-AEFIASPVEK----------------- 363

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIER 343
                +   I VDPPR+GL +  +  ++      I+Y+SCNP +  RD++ L   + I  
Sbjct: 364 -APIIKANKIIVDPPRAGLTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKL-KGYKIID 421

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           +   D FP T H+E  +L+ +
Sbjct: 422 MQPLDMFPNTPHIENVILMKK 442


>gi|241662749|ref|YP_002981109.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia pickettii
           12D]
 gi|240864776|gb|ACS62437.1| RNA methyltransferase, TrmA family [Ralstonia pickettii 12D]
          Length = 496

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 136/386 (35%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +         +           YR RA   + H    
Sbjct: 129 GCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 188

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +    ++  ++ QI+    Q  
Sbjct: 189 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIELAVGQDV 247

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172
            A+V     R L+    E    LR        Q  L  +   T      LDR  +   L 
Sbjct: 248 TALVL----RNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYPLDR-TLTYTLP 302

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
             G T+ ++     FTQ N  IN  ++   L       GD LL+L+CG GNF+L +A   
Sbjct: 303 EFGITMPFK--PTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRA 360

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ +E ++     A  N   N +           +          F    D      +
Sbjct: 361 REVMGIEGSEALTTRALANAQHNGL-----------DAKTKFACRNLFEVTADDIAALGK 409

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STT 338
           F    VDPPR G    +  + +               I+Y+SCNP +L RD  +L     
Sbjct: 410 FDRWLVDPPREGALAVSKALAELSQRGGEEADLLPKRIVYVSCNPATLARDAGLLVHEAG 469

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +    + + FP+T H+E   +  R
Sbjct: 470 YRLAGAGVVNMFPHTSHVESMAVFER 495


>gi|68248938|ref|YP_248050.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|81336651|sp|Q4QNK7|RUMA_HAEI8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|68057137|gb|AAX87390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           86-028NP]
          Length = 438

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 154/364 (42%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W + +     M  +Q
Sbjct: 98  EMQRKAKQSALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQ 156

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSTPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  +++K    +++ Y D         +      
Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNSALNERMINTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N A N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 327 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434

Query: 362 LVRK 365
              K
Sbjct: 435 FTTK 438


>gi|328675743|gb|AEB28418.1| RNA methyltransferase, trmA family [Francisella cf. novicida 3523]
          Length = 449

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 153/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIF-----RSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +         +        S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLLNQLKYIGNGVEPESILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRYLADIDKCIVLNPLVGEKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  AI+     R L+    E   +L+       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAIIV----RHLEPFTNEDLEKLKAFGLKNNYWIYLQSKGPDTIFRLYPQDDVEPKKL 261

Query: 172 ---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
               VAG  + +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 NYQPVAGIDIGFE--PNDFTQVNNDINRKMIKRAIKLLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  S  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCSNIEKFNVKRIVYVSCDTATLARDAGILVKSKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|1717750|sp|P55134|TRMA_NEIGO RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT
 gi|551910|gb|AAA63404.1| ORF [Neisseria gonorrhoeae]
          Length = 225

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 111/230 (48%), Positives = 147/230 (63%), Gaps = 7/230 (3%)

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           +R D F   S  +N LM E++A       LR   + +++L++ S + +VT+IYH+ LDD 
Sbjct: 1   IRCDRFDAASEAVNCLMPELIAVAAQSAELRNHWYAVEFLSTLSGEMLVTMIYHKRLDDE 60

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W + A  L+  L      I +IGR+   KI L +DYV E L V  R   YRQIE SFTQP
Sbjct: 61  WMKAAQALQQQL-----DISVIGRSRGQKIVLKQDYVTETLRVGDRDFHYRQIEGSFTQP 115

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           NA +   MLEW  A  K   GDLLELYCGNGNF+L L+R+F +VLA EI+K SV AA++N
Sbjct: 116 NAAVCRKMLEWACARRKAWGGDLLELYCGNGNFTLPLSRYFRQVLATEISKTSVSAAQWN 175

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVD 298
           I AN + N+KI R+S++EFT+A   +REF RLK+  I +  Y F TIFVD
Sbjct: 176 IEANWIGNIKIARLSAEEFTEAYTGKREFTRLKESGIVLTDYAFSTIFVD 225


>gi|332289405|ref|YP_004420257.1| 23S rRNA 5-methyluridine methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330432301|gb|AEC17360.1| 23S rRNA 5-methyluridine methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 435

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 92/373 (24%), Positives = 154/373 (41%), Gaps = 34/373 (9%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWH--DG 55
            G  +     E Q   K   L + +     P ++I      E  HYR RA   + +    
Sbjct: 87  GGCQMQHIPIEMQRRAKEQALMRQLQKIA-PEVKIEAMISGEQWHYRRRARLSLQYVATT 145

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +      +Q+ + + I         ++AL+  ++  ++     R KL  I+ + + + 
Sbjct: 146 KQIKLGFRQKQSNQLVEISQCPVLVPALSALLPALIQLLQQWQQPR-KLGHIELVAADNG 204

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+      R L       A +L+  L  ++YQ+ L     + ++    +       +  
Sbjct: 205 IALFL----RHLGALNAVDAEKLQ--LFGQQYQLMLFVSEQEQQVSAWTE-ARPYYHIGA 257

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +      F Q N  IN  M++  L        D +L+L+CG GNF+L LA+   RV
Sbjct: 258 LKLFFDI--RDFIQVNRQINEKMVQTALNWLDPQADDQILDLFCGMGNFTLPLAQQSKRV 315

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFK 293
           + +E     VE ARYN   N + N    +   S  F   +  + +FN+            
Sbjct: 316 VGIEGVAQMVEKARYNAQQNGITNALFHQADLSVPFANQIWAQEKFNK------------ 363

Query: 294 TIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
            I +DPPRSG       +++     ILY+SCNP +L RD  IL    + +E+ A+ D FP
Sbjct: 364 -ILLDPPRSGAAFVLNHLIELQAEKILYVSCNPATLVRDAKILVENGYHLEKSAMIDMFP 422

Query: 352 YTRHMECGVLLVR 364
            T H+E   L  +
Sbjct: 423 QTGHLESITLFSK 435


>gi|251793349|ref|YP_003008077.1| 23S rRNA 5-methyluridine methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534744|gb|ACS97990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aggregatibacter
           aphrophilus NJ8700]
          Length = 438

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 158/364 (43%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQ 65
           E Q + K   L Q +   Q   +Q   + + +   YR R    I  DG    L   +  +
Sbjct: 98  ELQRSAKQKALMQRLSRLQSTPIQFMPLLQGDEWGYRRRVRLSIGFDGKTRKLQIGLRRK 157

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            +++ + I+  +  +  +N L+ ++ A +  +  +  +L  I+ +++ +  A++     R
Sbjct: 158 NSQQIITIERCLVLAQPLNNLLPKLTA-LFAQWSMPQQLGHIELVSADNGVAMLL----R 212

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            + +  +     L +     +  + +            + Y    L    + L +     
Sbjct: 213 HVKNIAKNDRTLLLNFAEQHQLMLFVQEHDAIEHWRGAQPY--YGLNDGSQ-LQFDI--R 267

Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q NA +N  M+   L   +   Q  +L+L+CG GNF+L L+R     + +E     V
Sbjct: 268 DFIQINADLNRQMITTALDWLSLNSQDHVLDLFCGMGNFTLPLSRKVKSAVGIEGVSAMV 327

Query: 245 EAARYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           E AR N   N   NV+  +   ++ F      ++ FN+             I +DPPR+G
Sbjct: 328 EKARANAERNRCANVQFYQADLEQPFISQPWAQQPFNK-------------ILLDPPRTG 374

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
              A   + Q A   ILY+SCNP +L RD   +L+  + ++++A+ D FP+T H+E   L
Sbjct: 375 AAFALQALCQLAAEKILYVSCNPATLVRDTEILLNAGYQLDKVAMIDMFPHTGHLESISL 434

Query: 362 LVRK 365
             +K
Sbjct: 435 YQKK 438


>gi|167581700|ref|ZP_02374574.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           thailandensis TXDOH]
          Length = 465

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 136/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGSQV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R+L+         LR+   A + Q  L  +   T        V    T+  
Sbjct: 220 TALVL----RVLEPINATDETLLREFADAHRVQFWLQPKGPDTVAPFYPLDVQLDYTLPE 275

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR    V
Sbjct: 276 FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREV 335

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+              +      F    D       F  
Sbjct: 336 VGIEGSETLTSRALANAKENGVDGHT-----------SFASRNLFEVTADDLRALGAFDK 384

Query: 295 IFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERL 344
             VDPPR G      A   + Q+        I+Y+SCNP +L RD  +L     + ++  
Sbjct: 385 FLVDPPREGALAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP+T H+E   L  R
Sbjct: 445 GVVNMFPHTSHVESIALFER 464


>gi|114562226|ref|YP_749739.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella
           frigidimarina NCIMB 400]
 gi|122300475|sp|Q086B4|RUMA_SHEFN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|114333519|gb|ABI70901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella
           frigidimarina NCIMB 400]
          Length = 455

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 144/381 (37%), Gaps = 38/381 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIW 52
              L       Q   K   L  ++             V +  +  +   HYR RA     
Sbjct: 91  GCDLQHMDTNAQREHKQTALVDLISKLSSAKAIDADIVADPIVGEA--WHYRRRARLATL 148

Query: 53  HDGD--DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            D +   L        + + + I      S  ++AL+  + A +      +A L  ++  
Sbjct: 149 FDKNTQRLQLGFRAGNSNKIVSIQQCPVLSESLSALITPLAANLNQLKA-KASLGHVE-- 205

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
            +Q+D     ++    +  A     +      H     +Q       T++       DE 
Sbjct: 206 LTQADNGNFAVLRVTKVLPASDIRWLTGFAEKHQLNLLLQD-DAGQLTQLFPLLPAGDEA 264

Query: 171 LTVAGRTLIYR-----QIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           + +    L            +F Q N  IN  M++  +       G+ +L+L+CG GNFS
Sbjct: 265 IALPYYHLAQEAVRCSFTPGNFVQVNGAINQAMVDQAIEWLDPQSGERILDLFCGVGNFS 324

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA     V+ VE     V+ A+ N   N ++NV          +  +  +    ++  
Sbjct: 325 LPLALKAAEVIGVEGVPEMVQQAKQNAIDNQLDNVTFYHAD---LSADLSTQTWLGKI-- 379

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIE 342
                     + +DP R+G  ++   + +  P  ++Y+SCNP SL RD S +L++ + I 
Sbjct: 380 --------DKLLLDPARAGAFESLQWLQKMQPKKVVYVSCNPASLARDSSVLLASGYRIA 431

Query: 343 RLALFDQFPYTRHMECGVLLV 363
           ++ L D FP T H+E  VL  
Sbjct: 432 QVGLVDMFPQTHHIEAMVLFE 452


>gi|294637605|ref|ZP_06715885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Edwardsiella tarda
           ATCC 23685]
 gi|291089235|gb|EFE21796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Edwardsiella tarda
           ATCC 23685]
          Length = 440

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/359 (21%), Positives = 136/359 (37%), Gaps = 30/359 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--T 67
           Q   K   L+++M       +    +   E   YR RA F +  D      I+  +Q  +
Sbjct: 100 QQQSKSQMLQRLMARETGVTITPSALIAGEAYGYRRRARFGLQFDAKRQRVILGFRQAAS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + +      +  + AL++ +   +      R +L  ++ + + +   +V     R L
Sbjct: 160 NDLVALRACPVLAPPLEALLLPLGDCLSALRA-RRRLGHLELVLADNGPLMVL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D         L          + L       +  L      E        +        F
Sbjct: 215 DPLHSADQAALEAFARQHGLALYLSDGQGAPRRLLG-----EAPYYQVADVRLAFDPQDF 269

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   L        + +L+L+CG GNF+L LAR    V+ VE  +  V  
Sbjct: 270 IQVNGQVNQQMVARALDWLDARADERVLDLFCGMGNFTLPLARQAQWVVGVEGVRELVAR 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N   N ++NV+    + +E             +      +  F  + +DP R+G   
Sbjct: 330 AQNNARHNGLSNVEFFHQNLEE------------DVTCQPWAAQGFDKVLLDPARAGAPG 377

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363
               +V   P  ++Y+SCNP +L RD   +L   + + RL L D FP+T H+E   L  
Sbjct: 378 VMQHIVHLAPRRVVYVSCNPATLARDSRVLLQGGYQLTRLCLLDMFPHTGHLESMALFE 436


>gi|145628685|ref|ZP_01784485.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145638756|ref|ZP_01794365.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           PittII]
 gi|144979155|gb|EDJ88841.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145272351|gb|EDK12259.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           PittII]
 gi|309750246|gb|ADO80230.1| 23S rRNA m5U1939 methyltransferase [Haemophilus influenzae R2866]
          Length = 438

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 154/364 (42%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W + +     M  +Q
Sbjct: 98  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQ 156

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + I         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNTNDLIPIQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  ++++T   +++ Y D         +      
Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDET---IEQIYGDAPYYQFSDGIKLHFDI 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N A N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 327 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434

Query: 362 LVRK 365
              K
Sbjct: 435 FTTK 438


>gi|240103955|ref|YP_002960264.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
 gi|239911509|gb|ACS34400.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
          Length = 421

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 141/378 (37%), Gaps = 50/378 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
              L    Y  QL  K  +L  ++      +++I  S     +R R +  I   G     
Sbjct: 75  GCLLQHLDYRDQLEFKRFKLNAILNE----DVEIIPSPKIFGHRNRIDVVISTRGIGFRR 130

Query: 61  IMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
                     + I++                  I    + +    + E LLR  + +   
Sbjct: 131 YGTWWD---VVDIEWCPVFGPSSKRVLKSLREFIEDHEVSLYEIGKNEGLLRYIVIREGK 187

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
            T      +VT      L + + +          +       +      +    ++++ E
Sbjct: 188 FTGDLMVNLVTGPGE--LPEDFPQYFDYAESIYWSVNRTPSDVSYGEIERF-WGKEFIKE 244

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
            L       +Y    NSF Q N+   V +L  V    +G  G +L+LY G G F + LAR
Sbjct: 245 EL----DGTVYLIHPNSFFQTNSYGAVELLREVAKRAEG--GRVLDLYSGVGTFGVYLAR 298

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V  +EI   +VE A  N   N V                   E  F    D D+ S
Sbjct: 299 KGFSVEGIEINPFAVEMANRNAEINGV-------------------EARFRVGADKDVGS 339

Query: 290 YR-FKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
            + + T+ VDPPR+GL    V  +  +    ++Y+SCNP +L RDL+ L + +T+  +  
Sbjct: 340 LQAYDTVIVDPPRAGLHPKLVKRLVQKGPEKLIYVSCNPKTLARDLNELKSVYTVGGIIG 399

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E  V L R
Sbjct: 400 LDMFPHTPHVEVVVELRR 417


>gi|299135646|ref|ZP_07028830.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX8]
 gi|298601770|gb|EFI57924.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX8]
          Length = 433

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 88/378 (23%), Positives = 142/378 (37%), Gaps = 30/378 (7%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDD 57
            G      +Y  Q+  K D LR+ M    V   P +     EP  YR R  F +      
Sbjct: 72  GGCQYQHAEYATQVEIKRDILRETMQRAGVNTLPEIASHTGEPWGYRNRVRFRLGKVEGL 131

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL---FQIDYLTSQS 114
                  + T   + I      + L+    + ++         +  L    ++++  +  
Sbjct: 132 FRVGYSVRGTNAFLPITQCPIAAPLLWKAAVALLQLSENNIEAKLWLEAANEVEFFCNAD 191

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKICLDRDYVDER 170
              +   +       A +    RL +AL     ++     L G A          +    
Sbjct: 192 LSRLQMTLLCARAKPAKKNSFARLCEALQQGVPELSGAGVLTGDARGGNTNFTEGWGIAG 251

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR 229
           L        Y      F Q N  +   +L  V     G  GD+  +L+ G G FS VLAR
Sbjct: 252 LAYRVADENYWVSRGGFFQVNRFLVEKLLPLV---CVGRSGDIAWDLFAGVGLFSRVLAR 308

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
            F +V AVE    +    R ++      +   V+ S+ EF +    +RE           
Sbjct: 309 SFAQVTAVEANPSAANDLRISLGKLGSQHRS-VQASTLEFLRGAVVQRE----------- 356

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
            R   I +DPPR+G       ++   A P ++Y+SC+P +L RDL +L   + I  + L 
Sbjct: 357 -RPALIVLDPPRAGAGVEACELLLKLAAPAVVYVSCDPTTLARDLVVLQRDYRIAEIHLV 415

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP T H+E  V+L R+
Sbjct: 416 DLFPQTFHLETVVMLARR 433


>gi|210632813|ref|ZP_03297546.1| hypothetical protein COLSTE_01449 [Collinsella stercoris DSM 13279]
 gi|210159372|gb|EEA90343.1| hypothetical protein COLSTE_01449 [Collinsella stercoris DSM 13279]
          Length = 437

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 134/373 (35%), Gaps = 34/373 (9%)

Query: 9   QYEQQLAEKVDRLRQMML---AFQVPNLQIFR------SEPIHYRMRAEFHIWHDGDDLY 59
            +E QL  K + LR  +     F    +           +   YR + E    H+     
Sbjct: 81  SHEAQLQAKEENLRSALARIGKFSPKEVDDLMRPIRHAKDAWGYRNKIELAPVHENGKFR 140

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAI 118
             M  +   + +++D            +  +   +      R   L ++   +S+   A+
Sbjct: 141 LGMHGRDASQIIKVDACPLFEKKHAKAVKAVAGALGFLGNSRDLQLERVAIRSSRRTGAL 200

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--DERLTVAGR 176
              ++         + +  L DA+ A      +     + +     + +  +   T    
Sbjct: 201 EVALWTPTGAFPRAQVSRVLGDAVRATSVVRVMSKGEKRARRVSGVEALAGEGSWTEKIG 260

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVL 235
               R    SF Q N      +++ V+ A      +L ++LYCG G F+L LAR  + V 
Sbjct: 261 DETMRLSAPSFFQVNTRAAEILIDLVMEALDPQPHELGIDLYCGAGTFTLPLARRCEFVS 320

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AVE   P+V   R N+   ++ NV ++   +                 D D        +
Sbjct: 321 AVESYGPAVRDLRRNLDIANITNVDVIGGDA------------VREFPDEDA-----DVL 363

Query: 296 FVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
            VDPPR+GL    + ++ +     + Y+SC+P +L RDL       T         D FP
Sbjct: 364 VVDPPRAGLAPEAIDLIASTSARDVAYVSCDPATLARDLRRFVEEGTFRPVWATPVDLFP 423

Query: 352 YTRHMECGVLLVR 364
            T H E  V L R
Sbjct: 424 QTFHCETVVRLTR 436


>gi|229816581|ref|ZP_04446880.1| hypothetical protein COLINT_03639 [Collinsella intestinalis DSM
           13280]
 gi|229807916|gb|EEP43719.1| hypothetical protein COLINT_03639 [Collinsella intestinalis DSM
           13280]
          Length = 421

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 133/413 (32%), Gaps = 66/413 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-------QVPNLQIFRSE--------------- 39
             T L   Y +QLA K   +R++                 +                   
Sbjct: 24  GCTWLGLPYRKQLARKHTAMRELFEPLIAQFDWDARVEPVLGMGSSRESGPVTVTDTPLA 83

Query: 40  -PIHYRMRAEFHIWHDGDDL-YHIMFDQQTKERMRIDYF----MPGSLLIN-------AL 86
            P  +R +A        D       F + T + +              L+N        L
Sbjct: 84  APRAFRHKAATPFAPAADGSVRGGFFARGTHDIVDCPACAVEAPGARELLNDVAHLATEL 143

Query: 87  MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT--LIYHRLLDDAWR--ECAIRLRDAL 142
            I      R    LR  + +  + T +S   +VT  L   RL + A R  E    L    
Sbjct: 144 GIPAYDEDRRCGQLRYAVLRCGWRTDESMLTLVTRSLEVDRLDELACRLIESHPELVTVA 203

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                ++       +T+I   R    ER+T       +     SF Q N      + +  
Sbjct: 204 QNVNPRVTNAILGGQTRILAGR----ERMTDRLLDCTFEISPVSFYQVNPQQTEVLYQLA 259

Query: 203 LAATKGIQGD-LLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANH 255
           +        D +L+ YCG+G   L  A    +      +  VE     V  A  N   N 
Sbjct: 260 IDGMDLTGSDAVLDTYCGSGTIGLAAAAAARKQGFDIALTGVERNPEGVRDAVRNAELND 319

Query: 256 VNNVK-IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ- 313
           ++     +   + E+              +          + +DPPR+G     +     
Sbjct: 320 LDATSSFIARDATEYML------------EAAHRGDHVDVLVMDPPRAGSTPEFLDAASS 367

Query: 314 -AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            A   I+YISCNP +  RDL  L    + +ERL   D FP+T H+E   +L R
Sbjct: 368 LAPRRIVYISCNPHTQVRDLEHLGRTGYRLERLTPVDLFPHTEHVETVAILTR 420


>gi|145640279|ref|ZP_01795863.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           R3021]
 gi|145274865|gb|EDK14727.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           22.4-21]
          Length = 404

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 153/364 (42%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W + +     M  +Q
Sbjct: 64  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQ 122

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + I         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 123 KNTNDLIPIQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 180

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  +++K    +++ Y D         +      
Sbjct: 181 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 232

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 233 RDFIQVNRALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 292

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N A N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 293 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 340

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 341 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 400

Query: 362 LVRK 365
              K
Sbjct: 401 FTTK 404


>gi|300691812|ref|YP_003752807.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Ralstonia
           solanacearum PSI07]
 gi|299078872|emb|CBJ51533.2| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Ralstonia
           solanacearum PSI07]
          Length = 494

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 137/385 (35%), Gaps = 40/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   L   +         +           YR RA   + H    
Sbjct: 127 GCSMQHLDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 186

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +    ++  ++ QI+    Q  
Sbjct: 187 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIELAVGQDV 245

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            A+V     R+L+         LR     HA ++ +Q  G             +   L  
Sbjct: 246 TALVL----RILEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPE 301

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G T+ ++     FTQ N  IN  ++  VL       GD LL+L+CG GNF+L +A    
Sbjct: 302 FGITMPFK--PTDFTQVNHQINRVLMSRVLKLLDAQPGDRLLDLFCGIGNFTLPMATRGR 359

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++     A  N   N +           +          F    D      RF
Sbjct: 360 EVMGIEGSETLTTRALANAQHNGL-----------DAKTTFACRNLFEVTADDIAELGRF 408

Query: 293 KTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STTH 339
               VDPPR G    +  + +               I+Y+SCNP +L RD  +L     +
Sbjct: 409 DRWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGY 468

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +    + + FP+T H+E   +  R
Sbjct: 469 RLAGAGVVNMFPHTSHVESIAVFER 493


>gi|326563434|gb|EGE13699.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           12P80B1]
          Length = 497

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             +L   Q + Q+  K   L+++++        I       + + YR +A   + +    
Sbjct: 115 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKK 174

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114
           D       ++ +     ++        I    +E +  +  +   R  + Q++    Q+ 
Sbjct: 175 DSALVGFRERASNFLAELNECHILDKRI-GFELENLKALITDLNARDSIPQLEIAMGQTL 233

Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
               D      +  R + +   E   +LR    AR +Q+ L  +   +   +D +     
Sbjct: 234 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLFLQPKGADSVHRIDTEDARPT 293

Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
                        +    L Y      FTQ N  +N  M++   +     +G+ +L+L+C
Sbjct: 294 SLTVPPTGGLFYHLPNFELTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 353

Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G GNFSLVLAR       V+ VE ++   E A+ N  AN + + +     +K+ TQ +  
Sbjct: 354 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 410

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334
                  +     + RF  + +DPPRSG  +    + +     I+Y+SCNP +L RD   
Sbjct: 411 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 463

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +    + D F +T H+E      R
Sbjct: 464 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 494


>gi|254172832|ref|ZP_04879506.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
 gi|214032988|gb|EEB73816.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
          Length = 418

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 139/377 (36%), Gaps = 48/377 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
              L    Y  QL  K  +L  ++      N+ +  S     +R R +  I   G     
Sbjct: 75  GCLLQHLDYGDQLEFKKSKLSSILNE----NVDVIPSPKIFGHRNRIDVVISTKGIGFRR 130

Query: 61  IMFDQQTKERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
                     + I++                  I    + +    + E  LR  + +   
Sbjct: 131 YGTWWD---VVDIEWCPVFGRSSKRVLKSLREFIEDHDVSLYEIGKNEGFLRYIVIREGK 187

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
            T +    +VT      L + + E          +       +      +     +++ E
Sbjct: 188 FTGELMVNLVTAPG--KLPEDFPEYFAYADSLYWSVNRTPSDVSYGEIERF-WGGEFIRE 244

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
            L       +Y    NSF Q N+   V +L  V     G    +L+LY G G F + LA+
Sbjct: 245 EL----DGTLYLIHPNSFFQTNSYGAVELLREVAKRVDGE--RVLDLYSGVGTFGVYLAK 298

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              RV  +EI   +V+ A  N   N V N      + ++  +++R               
Sbjct: 299 RGFRVEGIEINPFAVKMANRNAELNGV-NASFRVGADRDV-ESLRA-------------- 342

Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALF 347
             + T+ VDPPR+GL    V  +VQ  P  ++Y+SCNP +L RDL  L   +T+  +   
Sbjct: 343 --YDTVIVDPPRAGLHPKLVERLVQNGPEQLVYVSCNPKTLARDLDKLKRVYTVSDIIGL 400

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H+E  V L R
Sbjct: 401 DMFPHTPHVEAVVELKR 417


>gi|145300354|ref|YP_001143195.1| 23S rRNA 5-methyluridine methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|189045732|sp|A4SRC5|RUMA_AERS4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|142853126|gb|ABO91447.1| 23S rRNA (uracil-5-)-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 439

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 142/362 (39%), Gaps = 31/362 (8%)

Query: 11  EQQLAEKVDRLRQMMLA---FQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDL--YHIMFD 64
           +QQ A K   L  +       + P L+ +   E   YR      I  D +          
Sbjct: 99  DQQ-AAKEAGLVSLFERLGQIKAPVLEPVLTGESRAYRRVCRLAIKFDKNGRCTRVGFRR 157

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           +Q+ + + I+     +  ++AL+  +   +      R +L   + + ++    ++     
Sbjct: 158 RQSNDLVEIEGCPVLAEPLSALIAPLRECLNRLKSQR-ELGHAELIQAEQGIMMLLRHTG 216

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R       E    L  A  A+   I L  +A   +I           ++ G +L +    
Sbjct: 217 RP-----NEADRALLVAF-AKSQGIDLYLQAADERIEPLHQVFQPSYSLDGLSLAF--AP 268

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  IN  M+   LA     + D +L+L+CG GNF+L LAR    V+ VE     
Sbjct: 269 GDFIQVNGPINQSMVAQALAWLGASKDDKVLDLFCGIGNFTLPLARQAREVVGVEGDLAM 328

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A  N   N ++N +  +         M   RE             F  + +DP R G
Sbjct: 329 VARAEENARRNGIDNARFYKADLSGDIVGMSWARE------------GFDLVLLDPARPG 376

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
             +    +V+  P  ++Y+SCNP +L RD  +L    + + RL + D FP+T H+E   L
Sbjct: 377 ALEVMGHVVKLSPKRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLESMAL 436

Query: 362 LV 363
             
Sbjct: 437 FE 438


>gi|291165734|gb|EFE27782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Filifactor alocis ATCC
           35896]
          Length = 547

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 78/404 (19%), Positives = 134/404 (33%), Gaps = 57/404 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW---HD 54
             +LL   YE+QL  K   L    +       Q    I   +   Y+ + EF       D
Sbjct: 79  GCSLLPISYEKQLELKQHALSDWFVKKGHEEFQEIEVIGSPDSREYKNKMEFTFGNEQKD 138

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE-----------MMATIRLEPLLRAK 103
           G     +    ++   + ++           ++                 +R E  LR  
Sbjct: 139 GQLTLGMHMTNRSNSIVFVEDCRIVDEDYRQILKATVSYFRKHNLPFYHIMRREGYLRHL 198

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI---------RLRDALHARKYQIQLIGR 154
           + +    T      +V L+    LD   +E            R+   LH           
Sbjct: 199 VLRKGKNTG---DILVNLVTTTQLDFDLKEYCSLLLDLSLDGRITGILHTENDSFSDAVI 255

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-----TKGI 209
             K        Y  E        + ++    SF Q N      +   V            
Sbjct: 256 PEKINCL----YGTELFEDKVLGMNFKISSFSFFQTNTKGAEILYSKVREMVKKVLEHRQ 311

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LY G G   ++++    +V+A+E+ + +VE A+ N   N V NV+ +       
Sbjct: 312 EETIFDLYSGTGTIGILVSTIAKKVIAIELIEEAVEMAKENAKMNGVENVEFIAGDVA-- 369

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
                        K++     +   I +DPPRSG+    +G V  +   +I+Y+SCNP  
Sbjct: 370 -------------KEVGKREEKPYLIILDPPRSGMHPKAIGDVLNFEAENIIYVSCNPKI 416

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
              +L +     + +      DQFP T H E   LL +     H
Sbjct: 417 FAEELHLFKEKGYQVMDKVGVDQFPNTNHCETVALLSKLDVDKH 460


>gi|124002028|ref|ZP_01686882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microscilla marina
           ATCC 23134]
 gi|123992494|gb|EAY31839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microscilla marina
           ATCC 23134]
          Length = 481

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 134/381 (35%), Gaps = 50/381 (13%)

Query: 23  QMMLAFQVPN--LQIFRSEPIHYRMRAEF----HIWHDGD-----------DLYHIMFDQ 65
           + +    +P     +  +   +YR + EF      W   +           +       +
Sbjct: 108 ERIGKLDLPEVKPILGSAHTQYYRNKLEFTFSNRRWMTKEEIATEEKIQDPNALGFHIPK 167

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSDQAI 118
           +  + + ID+        N + + +        L           L  +    + S   +
Sbjct: 168 RFDKILDIDHCYLQPDPSNKIRLTLKKYAVDNELTFFDQKNNEGFLRNVVIRNANSGDLM 227

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDYVDER- 170
           V +I+     +        L   +        +I             K+     ++ E  
Sbjct: 228 VIMIFFYDDQNLIVPLLEHLHSEVPEITSLQYIINPKQNDAYQDLPVKLFAGEPHITETM 287

Query: 171 --LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLV 226
             L     TL +R    SF Q NA      L  V      ++GD  + +LY G G  +  
Sbjct: 288 PSLDEGKPTLKFRVGAKSFYQTNASQAYE-LYKVAGEMADLKGDEVVYDLYTGTGTIANF 346

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +A    +V+ +E    ++E A+ N   N ++N        +          EF  L    
Sbjct: 347 IAHKAKKVIGLEYVPMAIENAKVNSEINSIDNTSFFAGDIQHLLD-----EEFVEL---- 397

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERL 344
                   I  DPPRSG+    V M++      I+Y+SCNP +  RDL++L+  + I  +
Sbjct: 398 --HGHPNVIITDPPRSGMHADVVEMLKKASPDKIVYVSCNPATQARDLAMLADEYDITAV 455

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP+T H+E  VLL RK
Sbjct: 456 QPVDMFPHTHHVENVVLLERK 476


>gi|255320868|ref|ZP_05362042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           radioresistens SK82]
 gi|262380239|ref|ZP_06073394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           radioresistens SH164]
 gi|255302037|gb|EET81280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           radioresistens SK82]
 gi|262298433|gb|EEY86347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           radioresistens SH164]
          Length = 463

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 151/379 (39%), Gaps = 35/379 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             +L     ++Q+  K D L   +  F     +      RS    YR +A   +      
Sbjct: 98  GCSLQHMHPDEQIRFKQDVLASHLKHFAAIEPEEWLPALRSTREDYRRKARIGVRFLAKE 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L     ++QT   + I         +   + E+   +      +A +  I+      D
Sbjct: 158 QKLKFGFRERQTNHLVSIQTCKVLDRAMAGHLNEL-QLLLESLTAKAAIGHIELAMGDHD 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERL 171
            A+V     R ++   +    +L     +R++Q+ L     ++   +D+     Y+  RL
Sbjct: 217 IALVI----RNIEKLPQVDVNQLTQYALSRQWQLYLQPAGPESLYRVDQPDASKYLHYRL 272

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230
                   +      FTQ N+ +N  M+           G+ +L+L+CG GNFSL LAR 
Sbjct: 273 EEFDIDFAF--SPLDFTQVNSTVNSQMVSLACNLLNLQPGERVLDLFCGLGNFSLPLARC 330

Query: 231 FDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                 V+AVE ++  V+    N  +N + NV+     S++ T+                
Sbjct: 331 VGETGQVIAVEGSEDMVKRGTENARSNKLLNVRFY---SQDLTKDFSSH---------SW 378

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
               F  + +DPPR+G ++    +       I+Y+SCNP +L RD  IL    + +++  
Sbjct: 379 AKQGFDALLIDPPRAGAEEVMHYLPNFNAKRIVYVSCNPATLARDAGILVEHGYRLKKAG 438

Query: 346 LFDQFPYTRHMECGVLLVR 364
           + D F +T H+E  VL  +
Sbjct: 439 VMDMFTHTGHVESIVLFEK 457


>gi|325577293|ref|ZP_08147777.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160875|gb|EGC72996.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 436

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 31/362 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHI-WHDGDDLYHIMFDQQ 66
           E Q   K   L   +   Q   +Q+      E   YR R    + W+  +    + F Q+
Sbjct: 98  EMQRKAKEKALFSRLSKLQAEPIQLMPMICGEQWGYRRRVRLSLLWNAKNKTIEMGFRQK 157

Query: 67  -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + + + I   +     IN L+ ++ A      + + +L  ++ +++++  A++ L Y  
Sbjct: 158 NSNQLVSIQQCLVAEPAINDLIPKLTALWAQYSVPK-QLGHVELVSAENGVAML-LRYKG 215

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L +  R   +     ++A    +Q     +   I L    +        R L +     
Sbjct: 216 NLAETDRTLLLEF-ARVNAVNLFLQ-----DDQCIQLAHGEMPYYSLDDIR-LSFDI--R 266

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q N  +N+ M+E  L      Q D +L+L+CG GNF+L LA+     + +E     V
Sbjct: 267 DFIQVNTHLNLQMVETALDWLDLNQDDHVLDLFCGMGNFTLPLAKRVKSAVGIEGVFDMV 326

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N   NH+ NV+  +       QA           +       F  I +DPPRSG 
Sbjct: 327 QKAQTNAQFNHIENVEFYQAD---LDQAFS---------EQPWAKQHFNKILLDPPRSGA 374

Query: 305 DDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL +  + I + A+ D FP+T H+E   L 
Sbjct: 375 AFALNALCELCAEKILYVSCNPATLVRDAEILRSFGYRIIKTAMIDMFPHTSHLESVTLF 434

Query: 363 VR 364
           ++
Sbjct: 435 IK 436


>gi|291528120|emb|CBK93706.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale M104/1]
          Length = 468

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 145/405 (35%), Gaps = 61/405 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF--------RSEPIHYRMRAEFHIW- 52
             T     YE+QL  K+ ++++++        +            +   YR + EF    
Sbjct: 80  GCTYQTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGIHGSPKKSEYRNKMEFSFGD 139

Query: 53  -HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLE-----------PL 99
            +    L   M  + +  + + +            ++   +                   
Sbjct: 140 EYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIPYFHRATHKGY 199

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-----------RECAIRLRDALHARKYQ 148
           LR  L +    T +    +VT       ++             R    R +  LH +   
Sbjct: 200 LRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGRFKGVLHTQNDS 259

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
           +  + +   T +     Y  E L      L ++    SF Q N+     + E       G
Sbjct: 260 VADVVKNEGTDVLYGDSYFYEELL----GLKFKITPFSFFQTNSLGAEVLYETAREFILG 315

Query: 209 IQGD------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              D      + +LY G G  + ++A     V+ VEI + +V AA+ N A N ++N K +
Sbjct: 316 DDKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALNGLDNCKFI 375

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320
                              LK +D    +   I +DPPR G+    +G +  Y   +++Y
Sbjct: 376 AGDV---------------LKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVY 420

Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           ISC P SL RDL I  +  + +E++   D FP T H+E  V L R
Sbjct: 421 ISCKPTSLARDLQIFMARGYRVEKICCVDMFPNTYHIETIVALHR 465


>gi|253988311|ref|YP_003039667.1| 23S rRNA 5-methyluridine methyltransferase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779761|emb|CAQ82922.1| 23S rRNA (uracil-5-)-methyltransferase [Photorhabdus asymbiotica]
          Length = 443

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 143/364 (39%), Gaps = 29/364 (7%)

Query: 13  QLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQ-QT 67
           Q   K   L  ++       V    +  S    YR RA   + +H       + F Q Q+
Sbjct: 100 QRESKASVLEHLIWRETGVTVSAKPVILSPEYGYRRRARLGLQYHMKQRQLVMGFRQNQS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            E + +         +  L+  +   +      + +L  ++ + + +   I+     R L
Sbjct: 160 NEIVAVKRCPVLQPELEQLLQPLSQCLSNLKAAK-RLGHVELVLADNGPLIIL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D    E   +L     A ++   +   A++T +    +  +    V G  L++      F
Sbjct: 215 DPLKGEDKEKLCTF--AVQHHAAVYLMADETTLEPLNNSPEPWYQVDGLKLVF--SPRDF 270

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   +        D +L+L+CG GNF+L +AR    V+ VE     V  
Sbjct: 271 IQVNETVNQQMVAQAMEWLDLQPNDRVLDLFCGMGNFTLPIARKVQAVVGVEGVATLVAN 330

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            +YN   N+++N+     + +              +         F  + +DP R+G   
Sbjct: 331 GQYNAKLNNLDNISFYHENLEA------------NIHQQPWAKLGFNKVLLDPARAGAAG 378

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               +V+  P  ++Y+SCNP +L RD   +L   + I  + + D FP+T H+E  VL  R
Sbjct: 379 VMSHIVKLAPEKVVYVSCNPTTLARDSKTLLEAGYHIISVRMLDMFPHTGHLESMVLFSR 438

Query: 365 KPSG 368
              G
Sbjct: 439 IDCG 442


>gi|309782327|ref|ZP_07677054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia sp.
           5_7_47FAA]
 gi|308918945|gb|EFP64615.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia sp.
           5_7_47FAA]
          Length = 448

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 136/386 (35%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +         +           YR RA   + H    
Sbjct: 81  GCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +    ++  ++ QI+    Q  
Sbjct: 141 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIELAVGQDV 199

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172
            A+V     R L+    E    LR        Q  L  +   T      LDR  +   L 
Sbjct: 200 TALVL----RNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYPLDR-TLTYTLP 254

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
             G T+ ++     FTQ N  IN  ++   L       GD LL+L+CG GNF+L +A   
Sbjct: 255 EFGITMPFK--PTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRA 312

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ +E ++     A  N   N +           +          F    D      +
Sbjct: 313 REVMGIEGSEALTTRALANAQHNGL-----------DAKTKFACRNLFEVTADDIAALGK 361

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STT 338
           F    VDPPR G    +  + +               I+Y+SCNP +L RD  +L     
Sbjct: 362 FDRWLVDPPREGALAVSKALAELSQRGGEEADLLPKRIVYVSCNPATLARDAGLLVHEAG 421

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +    + + FP+T H+E   +  R
Sbjct: 422 YRLAGAGVVNMFPHTSHVESMAVFER 447


>gi|330445809|ref|ZP_08309461.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490000|dbj|GAA03958.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 380

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 85/388 (21%), Positives = 144/388 (37%), Gaps = 46/388 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y QQ+ +K D LR +         L    S    YR +A+  +     +   
Sbjct: 13  SCPLASTSYAQQIKQKDDALRSLFSEHHPQQWLAPVESAETGYRNKAKMVVLGAAHEPCL 72

Query: 61  IMFDQQT--KERMRIDYF----MPGS---------LLINALMIEMMATIRLEPLLRAKLF 105
            +  Q    K    +        P             I    I     ++ +  L+  L 
Sbjct: 73  GIQTQSALEKTIKPVSLCRCSLYPADMQDLLLYIEQWIRRAGIPPYNLVKKKGELKFVLL 132

Query: 106 QIDYLTSQSDQAIVTLIYHRLLD--DAWRECAIRLRDALHARKYQIQLIGRAN---KTKI 160
                T +     V    H  ++  +      +    A+      IQ +  A    + +I
Sbjct: 133 TRSENTGEFMLRFVMR-SHTAIERIENNLADLLAAFPAIKVVSVNIQPVHMARLEGEEEI 191

Query: 161 CL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYC 218
            L D  Y+ E+       +       SF Q N  +   +          ++   + +L+C
Sbjct: 192 FLTDAHYLLEQFNHVPLVVR----PKSFFQTNPKVAERLYATAKNWVSEVKPASMWDLFC 247

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G F+L  A   ++V  +EI   ++ +A+ +     VNN+    + S  FTQ+     E
Sbjct: 248 GVGGFALHCAEEVEQVTGIEIEPEAIASAKRSAEMMGVNNLDFAALDSTSFTQSNEAAPE 307

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                           + V+PPR G+ +A    +   A  HI+Y SCNP +L +DL+ L+
Sbjct: 308 L---------------VLVNPPRRGIGEALCQQLNTFAPKHIIYSSCNPQTLEKDLTRLT 352

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + + +   FD FP+T H+E  VLL R
Sbjct: 353 -GYKVMKFQWFDMFPHTDHVEAMVLLER 379


>gi|237809485|ref|YP_002893925.1| 23S rRNA 5-methyluridine methyltransferase [Tolumonas auensis DSM
           9187]
 gi|237501746|gb|ACQ94339.1| RNA methyltransferase, TrmA family [Tolumonas auensis DSM 9187]
          Length = 440

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 133/361 (36%), Gaps = 28/361 (7%)

Query: 13  QLAEKVDRLRQMM---LAFQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDL--YHIMFDQQ 66
           Q   K   ++++        +P    I  S P  YR      + +D +          +Q
Sbjct: 100 QCQAKQQGVQRLFRQLAKIDLPAPLWIESSAPQAYRRVCRLAVKYDKNKRCVLVGFRQKQ 159

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           ++  + I+     +  ++AL++ +   I      R  +  I+   ++S  A++     R 
Sbjct: 160 SQALVEINSCPVLTAALSALIVPLRTLINELSSARD-VGHIELYETESGLAMLLRHNGRP 218

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
                 +    L          + L        +   +             L        
Sbjct: 219 P----VKDKELLLAFALQHDCALYLQTTGYPEPLADVKPSF-----YQLDGLRLYFQPGD 269

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  ++ +V         D +L+L+CG GNF+L LAR    V  +E     V+
Sbjct: 270 FLQVNPQVNQRLVNYVREWLAPTATDNVLDLFCGIGNFTLPLAREAASVTGIEGVDEMVQ 329

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A +N   N + N    R    +  +            +       +  + +DP R+G +
Sbjct: 330 RATHNAEQNQLVNTGFHRADLTKMAE----------YANAGWQQQCYDLVLLDPGRTGAE 379

Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                + +     I+Y+SCNP +  RD ++L   +T+++  L D FP+T H+E   L  R
Sbjct: 380 AVMPWLAKSGARRIVYVSCNPVTAARDCALLQPGYTLKQWGLLDMFPHTGHVESLFLFER 439

Query: 365 K 365
           K
Sbjct: 440 K 440


>gi|225024584|ref|ZP_03713776.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC
           23834]
 gi|224942735|gb|EEG23944.1| hypothetical protein EIKCOROL_01461 [Eikenella corrodens ATCC
           23834]
          Length = 430

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 130/370 (35%), Gaps = 25/370 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             TL       Q+A K   L   +        Q            YR RA     H    
Sbjct: 74  GCTLQHVHSNVQVAYKQRILEDQLQRLGKVRPQYLLPPIYGQAWGYRYRARLSAHHSQGR 133

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                  + +   + I      +  +   +    A ++    L   +  I+   S +  +
Sbjct: 134 TTLGFQSRSSHRIVDIRQCPILAPQLANQLSNTRALLQQLNRLHTPVRTIELHHSPAANS 193

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +     H  L  A R   I+   +L A  +            +  D   +   L     T
Sbjct: 194 LTLHTEH--LPKAARAHLIQHAQSLPANWHIWLQTPHRPAQPLLPDSPQLSYSLPEYALT 251

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L YR     FTQ N   N+ ++   +   +   G+ + +L+CG GNFSL +A    +V+ 
Sbjct: 252 LPYR--PGDFTQVNPTANILLVARAIQLLQPQPGERIADLFCGLGNFSLPIAAAGAQVIG 309

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-FKTI 295
           +E +    E A  N   NH+   +  +  S +  Q            +  +  +  F  I
Sbjct: 310 IEGSPELTERASQNARLNHL--AERAQFHSADLFQT----------TEHTVAGWGYFDKI 357

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPRSG       +   Y    I+Y+SCNP +  RD ++L S  +      + + FP 
Sbjct: 358 LLDPPRSGAYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFRNAGIVNMFPQ 417

Query: 353 TRHMECGVLL 362
           T H+E     
Sbjct: 418 TAHVETVGCF 427


>gi|167902391|ref|ZP_02489596.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei NCTC 13177]
          Length = 465

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 275

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 333

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 334 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 382 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 441

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464


>gi|167562543|ref|ZP_02355459.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           oklahomensis EO147]
 gi|167569726|ref|ZP_02362600.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           oklahomensis C6786]
          Length = 465

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 140/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGSQV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--DERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T        V  D  L  
Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDVRLDYTLPE 275

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 276 YGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRGDRVLDLFCGIGNFTLPLARLAR 333

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E ++     A  N   N V+ +      +  E T    R                
Sbjct: 334 EVVGIEGSETLTSRALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F  + +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 382 FDKVLIDPPREGALAVSKALAEIAQSGVGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 441

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464


>gi|262374293|ref|ZP_06067569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter junii
           SH205]
 gi|262310851|gb|EEY91939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter junii
           SH205]
          Length = 469

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 153/377 (40%), Gaps = 31/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             +L     +QQ+  K + L+  +  F     +      RS    YR RA   + +    
Sbjct: 98  GCSLQHIHPDQQIVLKQNVLKSHLEHFAGLQPEEWLAPIRSVKTDYRRRARIGVRYIPKQ 157

Query: 58  LYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              +M  ++        I        +++  ++E+  T+      +A +  I+      +
Sbjct: 158 NRLVMGFREHHSNHLTDIQQCKVLDQVLSDSLVELK-TLLESLTGKAHIGHIELAMGDDE 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            +++     R LD+       +LR     + +Q+    +   +   +D ++   RL  + 
Sbjct: 217 VSLLI----RHLDELNVSDVNQLRQFTLLKGWQLYFQSKGIDSLHRVDDEHAPMRLHYSL 272

Query: 176 RTLI--YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
                 +      FTQ N+ +N  M++         +G+ +L+L+CG GNFSL LAR   
Sbjct: 273 EDFKVKFAFSPLDFTQVNSHVNARMVQLACELLDLKEGERVLDLFCGLGNFSLPLARCVG 332

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              RV+ VE +   VE A  N  AN++         S++ T+                  
Sbjct: 333 ETGRVIGVEASDEMVERATENAQANYLTQASFF---SQDLTKDFS---------HHSWAK 380

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALF 347
             F  + +DPPRSG  +    +       I+Y+SCNP +L RD  +L+   + +++ A+ 
Sbjct: 381 QGFDALLIDPPRSGAYEVMQYVPNFGAKRIVYVSCNPSTLARDAGVLAQYGYQLKKAAVM 440

Query: 348 DQFPYTRHMECGVLLVR 364
           D F +T H+E   L  +
Sbjct: 441 DMFTHTEHVESIALFEK 457


>gi|284009169|emb|CBA76214.1| 23S rRNA (uracil-5-)-methyltransferase [Arsenophonus nasoniae]
          Length = 466

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 141/363 (38%), Gaps = 25/363 (6%)

Query: 13  QLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Q A KV RL  +        V +L +       YR RA F + +   +    M  +Q + 
Sbjct: 120 QRAAKVSRLEYLFQCETGRAVKSLPVIAGSEYGYRRRARFGLHYQHAERRLRMGFRQNQS 179

Query: 70  RMRIDY--FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + ++          +  L++ +   +     ++  L  ++ + + +  +++     R L
Sbjct: 180 NVLVELKMCPVLQPELEKLLLPVADCLNKLAAVKH-LGHVELVNADNGVSVIL----RHL 234

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
                +  + L     +    + L+  + K    +     D     +   +       +F
Sbjct: 235 KPLATDDKMLLTAFARSYNLNVYLVDNSAKQLKLVSSASNDSDPYYSIENVKLTFDPQNF 294

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  IN  M+   L        D +L+L+CG GNF+L +A H   V+ VE     V  
Sbjct: 295 IQVNPEINKKMVAQALDWLALEPKDRVLDLFCGMGNFTLPIACHVHSVVGVEGVTELVAQ 354

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            RYN + N + N +  +   +                        F  I +DP R+G   
Sbjct: 355 GRYNASLNRLTNAEFYQADLELAID------------CQPWAKMGFNKILLDPARAGAIG 402

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               +++  P  ++YISCNP +L +D   +L+ ++ +  + + D FP+T H+E   L  R
Sbjct: 403 VMSHIIKLKPERVVYISCNPTTLVKDSKQLLTASYQLMSVRMLDMFPHTSHLESMALFCR 462

Query: 365 KPS 367
             S
Sbjct: 463 DSS 465


>gi|326578005|gb|EGE27869.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           O35E]
          Length = 497

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             +L   Q + Q+  K   L+++++        I       + + YR +A   + +    
Sbjct: 115 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKK 174

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114
           D       ++ +     ++        I    +E +  +  +   R  + Q++    Q+ 
Sbjct: 175 DSALVGFRERASNFLAELNECHILDKRI-GFELENLKALITDLNARDSIPQLEIAMGQTL 233

Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
               D      +  R + +   E   +LR    AR +Q+ L  +   +   +D +     
Sbjct: 234 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLFLQPKGVDSVHRIDTEDARPT 293

Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
                        +    L Y      FTQ N  +N  M++   +     +G+ +L+L+C
Sbjct: 294 SLTVPPTGGLFYHLPNFDLTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 353

Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G GNFSLVLAR       V+ VE ++   E A+ N  AN + + +     +K+ TQ +  
Sbjct: 354 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 410

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334
                  +     + RF  + +DPPRSG  +    + +     I+Y+SCNP +L RD   
Sbjct: 411 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 463

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +    + D F +T H+E      R
Sbjct: 464 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 494


>gi|53719142|ref|YP_108128.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei K96243]
 gi|53723555|ref|YP_103010.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei
           ATCC 23344]
 gi|124385031|ref|YP_001026066.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei
           NCTC 10229]
 gi|126448076|ref|YP_001080666.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei
           NCTC 10247]
 gi|162210058|ref|YP_333755.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 1710b]
 gi|167738259|ref|ZP_02411033.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 14]
 gi|167815449|ref|ZP_02447129.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 91]
 gi|167845400|ref|ZP_02470908.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei B7210]
 gi|167910633|ref|ZP_02497724.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 112]
 gi|254178072|ref|ZP_04884727.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           ATCC 10399]
 gi|254189063|ref|ZP_04895574.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254297423|ref|ZP_04964876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 406e]
 gi|254358296|ref|ZP_04974569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           2002721280]
 gi|90126210|sp|Q62JV9|RUMA_BURMA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|91207803|sp|Q3JRP8|RUMA_BURP1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|97273505|sp|Q63UT8|RUMA_BURPS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|52209556|emb|CAH35509.1| putative 23S rRNA (uracil-5-)-methyltransferase [Burkholderia
           pseudomallei K96243]
 gi|52426978|gb|AAU47571.1| ribosomal RNA large subunit (uracil-5-)-methyltransferase
           [Burkholderia mallei ATCC 23344]
 gi|124293051|gb|ABN02320.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           NCTC 10229]
 gi|126240946|gb|ABO04039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           NCTC 10247]
 gi|148027423|gb|EDK85444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           2002721280]
 gi|157807232|gb|EDO84402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 406e]
 gi|157936742|gb|EDO92412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160699111|gb|EDP89081.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           ATCC 10399]
          Length = 465

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 275

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 333

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 334 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 382 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 441

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464


>gi|206896070|ref|YP_002247852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738687|gb|ACI17765.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 438

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 150/385 (38%), Gaps = 42/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEP-IHYRMRAEFHIWHDGDD 57
              L    Y++QL  K +   Q +      +V N+ I  S+    YR +A F    + + 
Sbjct: 75  GCQLQHISYQEQLQWKSNFASQNLWKLAREKVDNVHIVPSDLLYGYRAKAHFTFGEENNI 134

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---------LRAKLFQID 108
           L    F +  K    +         +     ++++ +R   L         LR    ++ 
Sbjct: 135 LNIGYFSKSDK-WFALTTCPILKETLWVTAQDVLSVLRKHDLKSYFTSNGTLRHLQVRVS 193

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQLIGRANKTKICLDRD 165
            LT +  Q +VT        +   E  +       ALH    Q           +     
Sbjct: 194 LLTGEK-QVLVTFTQFPKNFENVAEEILSAGISSLALHQNTAQ-NKTVIGKGATLYNGNQ 251

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           YV E+L       +Y     SF Q N      +    L   +    D + E Y G G F+
Sbjct: 252 YVQEQLMGK----VYNITPVSFFQINPVQAEKLFSIALDYLEPQPEDIVFEGYSGVGAFT 307

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L+ A+    V+A E  + +V+ A  N A N+V+NV+ +    +E   ++++         
Sbjct: 308 LLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGSLQQ--------- 358

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTI 341
                 +   + VDPPR+G+    +  V       I+YISC+P +L RD+S      +++
Sbjct: 359 ------KINKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLARDISRFQPFGYSL 412

Query: 342 ERLALFDQFPYTRHMECGVLLVRKP 366
             +   D FP T H+EC  LL+++ 
Sbjct: 413 NHIQAIDMFPQTTHVECVALLIKEK 437


>gi|121599752|ref|YP_993159.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia mallei
           SAVP1]
 gi|251767657|ref|ZP_02268038.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           PRL-20]
 gi|254197594|ref|ZP_04904016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei S13]
 gi|254261237|ref|ZP_04952291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1710a]
 gi|121228562|gb|ABM51080.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           SAVP1]
 gi|169654335|gb|EDS87028.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei S13]
 gi|243062065|gb|EES44251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           PRL-20]
 gi|254219926|gb|EET09310.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1710a]
          Length = 485

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 180

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 353

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 401

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 461

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484


>gi|126455291|ref|YP_001066497.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|126228933|gb|ABN92473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1106a]
          Length = 465

 Score =  216 bits (551), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVEKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 275

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 333

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 334 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 382 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 441

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464


>gi|242316213|ref|ZP_04815229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1106b]
 gi|242139452|gb|EES25854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1106b]
          Length = 485

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVEKK 180

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 353

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 401

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 461

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484


>gi|332159394|ref|YP_004424673.1| putative RNA methyltransferase [Pyrococcus sp. NA2]
 gi|331034857|gb|AEC52669.1| putative RNA methyltransferase [Pyrococcus sp. NA2]
          Length = 408

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 149/379 (39%), Gaps = 56/379 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
              L    Y+ QL  K + LR+++  F    + I  S     +R R +  I  +G     
Sbjct: 69  GCILQHIAYDYQLEFKREILRRIL-GF---EVDIIPSPRIFGHRNRIDVAITSEG----- 119

Query: 61  IMFDQQTK--ERMRIDYFMP-----------GSLLINALMIEMMATIRLEPLLRAKLFQI 107
           I F ++ K  + + ID                   I    IE+      +  LR  + + 
Sbjct: 120 IGFRERGKWWKVVDIDECPVFGKTSKKALERLREFIEEEKIEVWKIKEDKGFLRYLVLRE 179

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
              T    + +V  +       +  E          +    +  +   +  K    ++++
Sbjct: 180 GKFTG---EVMVNFVTKEGELPSPVEYFDFADSIYWSINRTMSDVSYGDVEK-WWGKEFI 235

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
            ER+      + Y    NSF Q N+   ++++  V    +G +  +L++Y G G F + L
Sbjct: 236 TERI----DDVKYLIHPNSFFQTNSYQAINLVRKVSEFVEGEK--ILDMYSGVGTFGIYL 289

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+   +V+  +  + ++E AR N+  N V                   E EF    D  +
Sbjct: 290 AKRGMKVVGFDSNEFAIEMARRNVEINEV-------------------EAEFFVGTDRAV 330

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
               F T+ VDPPR+GL    V  +  +    I+Y+SCNP +  RD+ +L   + IE + 
Sbjct: 331 EVKGFDTVIVDPPRAGLHPKLVRRLNREKPDAIVYVSCNPKTFARDIKMLK--YKIEDII 388

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP+T H+E    L +
Sbjct: 389 ALDMFPHTPHVELVAKLSK 407


>gi|254433797|ref|ZP_05047305.1| 23S rRNA (uracil-5-)-methyltransferase [Nitrosococcus oceani AFC27]
 gi|207090130|gb|EDZ67401.1| 23S rRNA (uracil-5-)-methyltransferase [Nitrosococcus oceani AFC27]
          Length = 447

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 130/378 (34%), Gaps = 32/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-----PIHYRMRAEFHIW--HD 54
             +L       QL  K   +R+    F     + +           YR +A   +     
Sbjct: 87  GCSLQHLSTAAQLQLKQVTVREQFRHFGGVEPEQWLPPLVGGGYWGYRYKARLGVKFVKK 146

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            D +     ++ +     ++        +  L+  +   +        ++ QI+      
Sbjct: 147 KDRVLVGFREKGSSLIAALEGCEVPHPSVGYLLPAL-GELIASLSCYDRIPQIEVAAGDQ 205

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
              +V     R L         +L     A K QI L G   +T   L         +  
Sbjct: 206 STGLV----FRHLVPLTTADTEQLVAFGQAHKLQIYLQGGGAETVRLLWPAGARLSYSQF 261

Query: 175 GR-TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
           G+  +I+  +   FTQ N  +N  M+  VL   +   G+ +L+L+CG GNF+L LA    
Sbjct: 262 GKLEMIF--LPTDFTQVNREVNTKMVRRVLELLEIKSGERVLDLFCGIGNFTLPLAIAGA 319

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E     V  A  N   N + N                                 F
Sbjct: 320 EVVGIEGNAGLVARAVANATHNRLENAYFEMAD-----------LNGAEWTHYVWAREGF 368

Query: 293 KTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
               +DPPRSG   A   M +     I+Y+SCNP +L RD   L     + +    + D 
Sbjct: 369 SKALLDPPRSGALLAVQQMSKLRVQRIVYVSCNPATLARDAGELVNRQGYRLRYAGVIDM 428

Query: 350 FPYTRHMECGVLLV--RK 365
           FP+T H+E   L    RK
Sbjct: 429 FPHTTHVETLALFEQTRK 446


>gi|167893942|ref|ZP_02481344.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 7894]
 gi|167918662|ref|ZP_02505753.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei BCC215]
          Length = 465

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 139/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 275

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 333

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 334 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381

Query: 292 FKTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q+        I+Y+SCNP +L RD  +L     + +
Sbjct: 382 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRL 441

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464


>gi|269123421|ref|YP_003305998.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis
           DSM 12112]
 gi|268314747|gb|ACZ01121.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis
           DSM 12112]
          Length = 466

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 158/401 (39%), Gaps = 51/401 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM-LAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGD 56
             +     YE+Q   K + + +++  + +  N +    +       YR + EF   ++  
Sbjct: 82  GCSFQYLSYEKQAELKANLVYKLIDNSIKNKNYEKLPIVTMGNDKEYRNKMEFSFGNEYK 141

Query: 57  D--LYHIMFDQQT-KERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRA 102
           D  +   +  + +  + + ++           +            I     +     LR 
Sbjct: 142 DGPIILGLHKKNSFHDIVNVNECRLMDENFRKIVRFTNDFFSKKDISFYHRLTHIGFLRN 201

Query: 103 KLFQIDYLTSQSDQAIVTL--IYHRLLDDAWRECAI------RLRDALHARKYQIQLIGR 154
            + +    T +    IVT   I +  + D ++E  +       L+  +H          R
Sbjct: 202 LVIRKGEKTKELGVNIVTTSQIENYDIIDEYKEKLLCLDLSMGLKSIIHTINDNKSDSVR 261

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-----TKGI 209
           A+K  I   +  + ERL      L +     SF Q N+     + + V+           
Sbjct: 262 ADKEIILYGKRDITERL----FDLSFNVSPYSFFQTNSFGVEKLYQEVINNLLFITKNDE 317

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +L+ G G    +++++   V  +E+ + +V  A  N   N + N K +       
Sbjct: 318 KPIVFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKANENAIKNGITNAKFIAGDV--- 374

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
                    F +L++ D  + +   + +DPPRSG+ + T+  +  Y   +I+Y+SCNP +
Sbjct: 375 ---------FEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYIIYVSCNPKT 425

Query: 328 LCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           L  DL I    ++ ++R+   D F YT H+EC VL+ R  S
Sbjct: 426 LAEDLKIFEYNSYILKRVVCVDMFGYTPHVECIVLIQRVKS 466


>gi|288576123|ref|ZP_05978225.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa ATCC
           25996]
 gi|288566282|gb|EFC87842.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa ATCC
           25996]
          Length = 458

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 145/374 (38%), Gaps = 28/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             ++       Q+A K   + + +        +         P HYR RA   I  D   
Sbjct: 94  GCSIQHIDPTAQIAFKQRIMEEQLERIGKIRPEQILPAIYGTPWHYRDRARLSISKDAGG 153

Query: 58  LYHIMF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
              I F  +++ E + +D  M     I+  + ++     L+ L+   L  I++  S+   
Sbjct: 154 RLKIGFKAKKSHEVIDVDSCMVLPAHISEKLPKIKQ--MLQSLIDLDLLFIEFFNSEKLT 211

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRD--YVDERLT 172
            +      +      R+        L   K Q Q+  +A +   +    +D   +   L 
Sbjct: 212 VLNICSRKKPPSQKLRQLEKWFDTILGCEKKQWQIWLQAGRQEAQPFYPKDCQPLGYALP 271

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
                + Y+     FTQ NAG+N  M+   L          + +L+CG GNFS+ +A+  
Sbjct: 272 EFEVEMPYK--PGDFTQINAGLNGVMVGRALKLLDIQKNERIADLFCGLGNFSIPMAKSG 329

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ +E     VE AR N +AN              F++A   E +   L        +
Sbjct: 330 AEVVGIEGEGSLVERARNNASANG-------CFDRVSFSEADLFETDETVLASWG----Q 378

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
           F  + +DPPRSG       +   Y    I+Y+SCNP +  RD  +L +  + ++ + + +
Sbjct: 379 FDKMLLDPPRSGAYAVVKSLHAPYLPVKIVYVSCNPATFARDAEVLVNKGYRLKFVGVMN 438

Query: 349 QFPYTRHMECGVLL 362
            F  T H+E   + 
Sbjct: 439 MFAQTSHVESIGVF 452


>gi|217421778|ref|ZP_03453282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 576]
 gi|226197424|ref|ZP_03793001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei Pakistan 9]
 gi|217395520|gb|EEC35538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 576]
 gi|225930803|gb|EEH26813.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei Pakistan 9]
          Length = 485

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 139/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 180

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 353

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 401

Query: 292 FKTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q+        I+Y+SCNP +L RD  +L     + +
Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRL 461

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484


>gi|240948983|ref|ZP_04753337.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus minor
           NM305]
 gi|240296570|gb|EER47188.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus minor
           NM305]
          Length = 440

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 148/370 (40%), Gaps = 29/370 (7%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDD 57
            G  +     E Q   K   L Q +   Q   + +      +   YR R +  +     +
Sbjct: 91  GGCQMQHISLEVQRETKQQALFQRLQKLQSSPITLEPMLVGQAKGYRRRTKLSVALQNGN 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +      Q + + + ++     +  ++AL++ +   +      +  L  I+ + + +  A
Sbjct: 151 VVMGFRMQNSNQIIPLEQCEILTPALSALLLPLQNLLLNWKQKKH-LGHIELVEADNTVA 209

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           ++     R + +  +    +L       K  + L+  A + +         E+       
Sbjct: 210 MLL----RYMGELAQSDLAQLLAFAKETKLSLFLMNDAQQIEHICG-----EKPYYKLND 260

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L        F Q NA  N  M+   L      + D +L+L+CG GNF+L LA+    V+ 
Sbjct: 261 LTLHFSIRDFIQVNAEQNQKMVAQALNWLALEKSDRVLDLFCGMGNFTLPLAQQAGYVVG 320

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +  V  AR N   N ++NV   + +  E            R  D    +  F  + 
Sbjct: 321 VEGVEEMVATARQNAVENQLDNVAFYQTNLDE------------RFVDQPWATEAFNKVL 368

Query: 297 VDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354
           +DP R G   A   + +  P  I+Y+SCNP +L RD   L  + +++ ++A+ D FP+T 
Sbjct: 369 LDPARHGAYFALDHLCELNPERIVYVSCNPATLVRDAEKLIKSGYSLAKVAVIDMFPHTG 428

Query: 355 HMECGVLLVR 364
           H+E   L V+
Sbjct: 429 HLESISLFVK 438


>gi|195352293|ref|XP_002042647.1| GM14902 [Drosophila sechellia]
 gi|194124531|gb|EDW46574.1| GM14902 [Drosophila sechellia]
          Length = 615

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 154/422 (36%), Gaps = 64/422 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45
             L    Y+QQL +K + +  ++  +            P+L      ++  S  +  YR 
Sbjct: 165 CPLSHIAYDQQLKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRN 224

Query: 46  RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97
           + EF +  +             +   + E   +    +    +        +++   +  
Sbjct: 225 KNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 284

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARK-- 146
           P          R  + +    T +    +V  IY   L +D   E    L+         
Sbjct: 285 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQAELKEELKSFYEELGKD 342

Query: 147 ---------YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                    YQ      A +T   ++       +T   + L +R    +F Q N      
Sbjct: 343 APYKCTSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 402

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +      +   +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN +
Sbjct: 403 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 462

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313
            N K    ++ +F ++M RE  +++     +         VDPPR+GL   ++  ++   
Sbjct: 463 KNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 518

Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           A   ++Y+SCNP S  R+   L               +     D FP+T H E  +L  R
Sbjct: 519 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578

Query: 365 KP 366
           +P
Sbjct: 579 EP 580


>gi|126442107|ref|YP_001059230.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 668]
 gi|126221600|gb|ABN85106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 668]
          Length = 485

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 180

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 353

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 401

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 461

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484


>gi|89256815|ref|YP_514177.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|115315201|ref|YP_763924.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502981|ref|YP_001429046.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009854|ref|ZP_02274785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254368098|ref|ZP_04984118.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|290953511|ref|ZP_06558132.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313203|ref|ZP_06803862.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122324802|sp|Q0BKU7|RUMA_FRATO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122500404|sp|Q2A275|RUMA_FRATH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|89144646|emb|CAJ79970.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica LVS]
 gi|115130100|gb|ABI83287.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253908|gb|EBA53002.1| 23S rRNA (uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|156253584|gb|ABU62090.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 449

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|326561885|gb|EGE12220.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           7169]
 gi|326563319|gb|EGE13586.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           46P47B1]
 gi|326565973|gb|EGE16134.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           103P14B1]
 gi|326568893|gb|EGE18962.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           BC1]
 gi|326575378|gb|EGE25303.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           101P30B1]
          Length = 497

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             +L   Q + Q+  K   L+++++        I       + + YR +A   + +    
Sbjct: 115 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKK 174

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114
           D       ++ +     ++        I    +E +  +  +   R  + Q++    Q+ 
Sbjct: 175 DSALVGFRERASNFLAELNECHILDKRI-GFELENLKALITDLNARDSIPQLEIAMGQTL 233

Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
               D      +  R + +   E   +LR    AR +Q+ L  +   +   +D +     
Sbjct: 234 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLFLQPKGVDSVHRIDTEDARPT 293

Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
                        +    L Y      FTQ N  +N  M++   +     +G+ +L+L+C
Sbjct: 294 SLTVPPTGGLFYHLPNFDLTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 353

Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G GNFSLVLAR       V+ VE ++   E A+ N  AN + + +     +K+ TQ +  
Sbjct: 354 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 410

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334
                  +     + RF  + +DPPRSG  +    + +     I+Y+SCNP +L RD   
Sbjct: 411 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 463

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +    + D F +T H+E      R
Sbjct: 464 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 494


>gi|54112953|gb|AAV29110.1| NT02FT0992 [synthetic construct]
          Length = 449

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|224456895|ref|ZP_03665368.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370321|ref|ZP_04986326.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874638|ref|ZP_05247348.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|151568564|gb|EDN34218.1| hypothetical protein FTBG_00076 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840637|gb|EET19073.1| rumA, 23S rRNA (uracil-5-)-methyltransferase [Francisella
           tularensis subsp. tularensis MA00-2987]
          Length = 449

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|194873870|ref|XP_001973294.1| GG13433 [Drosophila erecta]
 gi|190655077|gb|EDV52320.1| GG13433 [Drosophila erecta]
          Length = 615

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 80/422 (18%), Positives = 154/422 (36%), Gaps = 64/422 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45
             L    YEQQL +K + +  ++  +            P+L      ++  S  +  YR 
Sbjct: 165 CPLSHIAYEQQLKQKSEDMSALLAKYTQELRKVNPRAKPHLDKFQFQEVLPSPTVNGYRN 224

Query: 46  RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97
           + EF +  +             +   + E   +    +    +        +++   R  
Sbjct: 225 KNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSRFL 284

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHAR--- 145
           P          R  + +    T +    +V  IY   L DD   E    L+         
Sbjct: 285 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSDDEQGELKQELKSFYEELAKD 342

Query: 146 ------KYQIQLIGRANKTKIC--LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                     Q +      ++   ++  +    +T   + L +R    +F Q N      
Sbjct: 343 APYKCTSLYYQDVKHREAGQMINPVEHIWGSTHITDTIQGLQFRISPLAFFQINTEGANV 402

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +      +   +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN +
Sbjct: 403 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCRKVMGVEIVPDAIKDAEFNAEANGI 462

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313
            N K    ++ +F ++M RE  +++     +         VDPPR+GL   ++  ++   
Sbjct: 463 KNAKFFTGNANDFIKSMVREALYDQEPGKPVDL----IAVVDPPRAGLHHRSIAAIRSAD 518

Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           A   ++Y+SCNP S  R+   L               +     D FP+T H E  +L  R
Sbjct: 519 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578

Query: 365 KP 366
           +P
Sbjct: 579 EP 580


>gi|326576535|gb|EGE26443.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           CO72]
          Length = 473

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             +L   Q + Q+  K   L+++++        I       + + YR +A   + +    
Sbjct: 91  GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKK 150

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114
           D       ++ +     ++        I    +E +  +  +   R  + Q++    Q+ 
Sbjct: 151 DSALVGFRERASNFLAELNECHILDKRI-GFELENLKALITDLNARDSIPQLEIAMGQTL 209

Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
               D      +  R + +   E   +LR    AR +Q+ L  +   +   +D +     
Sbjct: 210 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLFLQPKGVDSVHRIDTEDARPT 269

Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
                        +    L Y      FTQ N  +N  M++   +     +G+ +L+L+C
Sbjct: 270 SLTVPPTGGLFYHLPNFDLTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 329

Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G GNFSLVLAR       V+ VE ++   E A+ N  AN + + +     +K+ TQ +  
Sbjct: 330 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 386

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334
                  +     + RF  + +DPPRSG  +    + +     I+Y+SCNP +L RD   
Sbjct: 387 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 439

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +    + D F +T H+E      R
Sbjct: 440 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 470


>gi|88812357|ref|ZP_01127607.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231]
 gi|88790364|gb|EAR21481.1| 23S rRNA methyltransferase/RumA [Nitrococcus mobilis Nb-231]
          Length = 450

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 140/380 (36%), Gaps = 31/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHI-WHDGD 56
              L     +QQL  K   +R+ +                S    YR +A   + +  G 
Sbjct: 86  GCALQHLTPQQQLTFKETVVREKLRHMGGVEPSTWLAPLGSPAWGYRRKARLAVKYVAGK 145

Query: 57  DLYHIMFDQQTKERMRIDY--FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           D   ++  ++T   +  D          I A + ++  TIR   +   ++ QI+      
Sbjct: 146 DDRVLVGFRETHSTLVADLASCRVLDPRIGAHIPQLAETIRCLSIF-DRVPQIEVAAGDQ 204

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI--QLIGRANKTKICLDRDYVDERLT 172
              +V     R L     E    L        + +  Q   +A+   I      +   L 
Sbjct: 205 AVGLV----FRNLAPFTVEDYRLLSAFARQYDFYVYEQPGDKASVRPIWPRAPQLSYALP 260

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
               ++ +      FTQ N  +N  ++E  +A      Q  +L+LYCG GNF+  +AR  
Sbjct: 261 DHAVSVFFE--PTDFTQVNPAVNHALVERAIALLALQPQDRVLDLYCGLGNFAFCIARQV 318

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ +E     VE AR N A N + NV   R         +             +    
Sbjct: 319 ASVVGLEGDDALVERARENAARNAITNVVFQRADLSRGIAELAH-----------LQRDG 367

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348
              + +DPPRSG  +    +       I+Y+SC P +L RD   L     + +    + D
Sbjct: 368 VSRVLLDPPRSGAAEVLADIAALRAERIVYVSCGPSTLARDAGRLVHEYGYRLAAAGVMD 427

Query: 349 QFPYTRHMECGVLLVRKPSG 368
            FP+T H+EC  L VR  +G
Sbjct: 428 MFPHTAHVECITLFVRDQAG 447


>gi|77164319|ref|YP_342844.1| 23S rRNA methyltransferase/RumA [Nitrosococcus oceani ATCC 19707]
 gi|91207806|sp|Q3JCY2|RUMA_NITOC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|76882633|gb|ABA57314.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrosococcus oceani ATCC
           19707]
          Length = 447

 Score =  216 bits (550), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 130/378 (34%), Gaps = 32/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE-----PIHYRMRAEFHIW--HD 54
             +L       QL  K   +R+    F     + +           YR +A   +     
Sbjct: 87  GCSLQHLSTAAQLQLKQVTVREQFRHFGGVEPEQWLPPLVGGGYWGYRYKARLGVKFVKK 146

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            D +     ++ +     ++        +  L+  +   +        ++ QI+      
Sbjct: 147 KDRVLVGFREKGSSLIAALEGCEVLHPSVGYLLPAL-GELIASLSCYDRIPQIEVAAGDQ 205

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
              +V     R L         +L     A K QI L G   +T   L         +  
Sbjct: 206 STGLV----FRHLVPLTTADTEQLVAFGQAHKLQIYLQGGGAETVRLLWPAGARLSYSQF 261

Query: 175 GR-TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
           G+  +I+  +   FTQ N  +N  M+  VL   +   G+ +L+L+CG GNF+L LA    
Sbjct: 262 GKLEMIF--LPTDFTQVNREVNTKMVRRVLELLEIKSGERVLDLFCGIGNFTLPLAIAGA 319

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E     V  A  N   N + N                                 F
Sbjct: 320 EVVGIEGNAGLVARAVANATHNRLENAYFEMAD-----------LNGAEWTHYVWAREGF 368

Query: 293 KTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
               +DPPRSG   A   M +     I+Y+SCNP +L RD   L     + +    + D 
Sbjct: 369 SKALLDPPRSGALLAVQQMSKLRVQRIVYVSCNPATLARDAGELVNRQGYRLRYAGVIDM 428

Query: 350 FPYTRHMECGVLLV--RK 365
           FP+T H+E   L    RK
Sbjct: 429 FPHTTHVETLALFEQTRK 446


>gi|134277323|ref|ZP_01764038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 305]
 gi|134250973|gb|EBA51052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 305]
          Length = 485

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 139/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 180

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 353

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTSDDLRAL------------GA 401

Query: 292 FKTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q+        I+Y+SCNP +L RD  +L     + +
Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRL 461

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484


>gi|77359689|ref|YP_339264.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification
           at position U1939, SAM-dependent [Pseudoalteromonas
           haloplanktis TAC125]
 gi|123587143|sp|Q3IDM6|RUMA_PSEHT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|76874600|emb|CAI85821.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification
           at position U1939, SAM-dependent [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 441

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 147/378 (38%), Gaps = 39/378 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGD- 56
              L      QQ+ EK   + ++   F   +         S+  HYR  A   +  D   
Sbjct: 89  GCQLQHLDSSQQVVEKQIAVSKLFEKFAKLDELNWQAPLLSKATHYRRSARLAVMFDKKA 148

Query: 57  -DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             ++       +K  + I+     S +   +       I     L +       L    +
Sbjct: 149 KKMHVGYRASGSKSIISINECPVLSEVFANVFTVFDNLINQHKALHS--VSHLQLCQGDE 206

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERL 171
           Q  V + + + + +  +    +      A + Q QL+ ++    I         Y  E L
Sbjct: 207 QNFVIIRHTKPISEDIKALVAQ-----SAAEQQWQLVWQSESEVIEHSHLAMPFYALEEL 261

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLAR 229
                 L +    N+F Q NA +N  ML+        ++GD  +L+L+CG GNFSLVLA+
Sbjct: 262 -----GLKFEFGLNNFIQVNASVNQAMLKQA-QNWLALKGDENVLDLFCGIGNFSLVLAK 315

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE    +V  A  N   N + N +                   N+++     +
Sbjct: 316 QAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLT------------NKIETASWFN 363

Query: 290 YRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALF 347
                + +DP R+G       + ++ +  ILY+SC+P +L RD +I+S     + ++ L 
Sbjct: 364 KNLDVLVLDPSRTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHKIGLM 423

Query: 348 DQFPYTRHMECGVLLVRK 365
           + FP+T H+E   L  R+
Sbjct: 424 NMFPHTGHIETMALFQRR 441


>gi|218289362|ref|ZP_03493596.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240468|gb|EED07649.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 449

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 141/378 (37%), Gaps = 31/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
              +    Y  Q A K  R+R+M     +    +   E    P  YR + +  +  +   
Sbjct: 87  GCQVQHMAYAAQAAWKEARIRRMAERLGLDASIVRPIEISRTPYRYRNQVQMPVRWNAAA 146

Query: 58  LYHIM--FDQQTKERMRIDYFMPGSLLINALMIEMMATIR----LEPLLRAKLFQIDYLT 111
               M  F   + +    +  +     ++ ++      +         +   + +   +T
Sbjct: 147 QRVEMGFFALGSHDMAVTETCLLVPEAMDDVLRRARWFLTSLGSTAQFVHHVIVRQSRVT 206

Query: 112 SQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
            +      V +   R+     R  A ++       + +       N  ++   R +++E 
Sbjct: 207 GEMAVVFAVAVDDPRVKRSVGRFHAPQVAQVAVTVQPRAHGPVWGNAVEVFKGRTHLEEI 266

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR 229
           +      L  R    SF Q    +   M E V+ A +  + D+ ++ YCG G  +L+LA 
Sbjct: 267 MC----GLRVRWSPRSFLQVQTDMAERMYEHVVRAAEVRETDVVIDAYCGIGVITLLLAE 322

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              R + VE  + ++  AR N   N + N + V    + +      E             
Sbjct: 323 RAARAVGVEEVEDAITDARANAKLNRLRNTEFVVDRVERWLPRFVEE------------G 370

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLAL 346
            R   +  DPPR G+D A +          ++Y+SCNP +L RDL +L +    +  +  
Sbjct: 371 NRADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLLMTRGFYVADIQP 430

Query: 347 FDQFPYTRHMECGVLLVR 364
           FD FP T H+EC V + R
Sbjct: 431 FDMFPQTSHVECVVAMRR 448


>gi|301169038|emb|CBW28635.1| 23S rRNA (uracil-5)-methyltransferase [Haemophilus influenzae
           10810]
          Length = 438

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 153/364 (42%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W +       M  +Q
Sbjct: 98  EMQRKAKQSALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIDMGFRQ 156

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  +++K    +++ Y D         +      
Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNSALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N A N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 327 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILRDFGYKIEKSAVIDMFPHTGHLESITL 434

Query: 362 LVRK 365
              K
Sbjct: 435 FTTK 438


>gi|254252252|ref|ZP_04945570.1| tRNA (uracil-5-)-methyltransferase [Burkholderia dolosa AUO158]
 gi|124894861|gb|EAY68741.1| tRNA (uracil-5-)-methyltransferase [Burkholderia dolosa AUO158]
          Length = 465

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 139/380 (36%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + +    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVVKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+     S 
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEAL-SIRDRMPQIELAVGSSV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  +A  E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 220 TALVLRVLEPI--NAADEALLRAFADEHQVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 277

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 278 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAREV 335

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+                     F    D       F  
Sbjct: 336 MGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 384

Query: 295 IFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q+        I+Y+SCNP +L RD  +L     + ++  
Sbjct: 385 FLIDPPREGALAVSKALAEIAQSGEGPLPMRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP+T H+E   L  R
Sbjct: 445 GVVNMFPHTSHVESIALFER 464


>gi|56707825|ref|YP_169721.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670296|ref|YP_666853.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|81597688|sp|Q5NGX1|RUMA_FRATT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122970996|sp|Q14IC3|RUMA_FRAT1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|56604317|emb|CAG45338.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320629|emb|CAL08721.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. tularensis FSC198]
 gi|282159001|gb|ADA78392.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 449

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|90415716|ref|ZP_01223650.1| RNA methyltransferase, TrmA family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90333039|gb|EAS48209.1| RNA methyltransferase, TrmA family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 439

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 142/374 (37%), Gaps = 31/374 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58
             TL    +  Q+A K  +L   +    +    I  +       YR RA   +    D  
Sbjct: 86  GCTLQHLDHGAQIAFKQQQLLDSLQRVDLSPEIILPALSAPQWGYRRRARLAVQRAKDGQ 145

Query: 59  YHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
             + F      R+  I      +  +  ++  +   +   P    +L +I+ L++ +  A
Sbjct: 146 IIVGFRNAGSRRIEPITECHVLAEPLPEIVAALPGWMVNFPS-GIRLSEIELLSADNAVA 204

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I                   L           QL  +  K       D  D+ L V    
Sbjct: 205 IAIEASRVPSASEREAMLAELT------FTDAQLWWKTEKQTAFKRIDGGDQALHVVLND 258

Query: 178 LIY-RQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFD 232
            I  +     F Q N+ IN  M++ VL   +    +     ++L+CG+GNFSL LA  FD
Sbjct: 259 RIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERASVAVDLFCGSGNFSLPLAAQFD 318

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           RV+ +E     V  A+ N   N+V+N + V                 +    +     + 
Sbjct: 319 RVIGIEGLSELVGKAQENAQRNNVSNAEFVVSD-------------LSNWTGMRKIKGKV 365

Query: 293 KTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
             + +DPPRSG       +V+     ++YISC+P ++ RDL +L    + +    + D F
Sbjct: 366 DLVLLDPPRSGAAGVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEAGYKMIAAGVMDMF 425

Query: 351 PYTRHMECGVLLVR 364
           P+T H+E   LL +
Sbjct: 426 PHTAHVEAIALLEK 439


>gi|238786284|ref|ZP_04630226.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia bercovieri
           ATCC 43970]
 gi|238712807|gb|EEQ04877.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia bercovieri
           ATCC 43970]
          Length = 425

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 73/361 (20%), Positives = 134/361 (37%), Gaps = 32/361 (8%)

Query: 12  QQLAE--KVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            QL +  K D L +++            +       YR RA   + +        M  +Q
Sbjct: 79  SQLQQTSKADSLSRLIAHATGLCPKLEPVICGPEYGYRRRARLGLLYQPKQHRLQMGFRQ 138

Query: 67  T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           T   + + + +       +  L+  +   +     +  +L  ++ + + +   +V     
Sbjct: 139 TESHDLVSVKHCPVLRPELERLLQPLYQCLSALQAV-QRLGHVELVLADNGPLLVL---- 193

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD   +     L D     +    L G     +  +      E        L      
Sbjct: 194 RHLDTLKQVDRTALIDFAKREQVTFYLAGDGENLEKLIG-----EEPYYQIDGLRLAFHP 248

Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   +A      Q  +L+L+CG GNF+L LA+    V+ VE     
Sbjct: 249 RDFIQVNDVVNQKMVAQAIAWLDVQPQERVLDLFCGMGNFTLPLAKRAREVVGVEGVAAL 308

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   +YN   N + NV     + +            + +         F  + +DP R+G
Sbjct: 309 VANGQYNARNNTLPNVSFFHENLE------------SDISCQPWAVQGFDKVLLDPARAG 356

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
                  +V+  P  ++Y+SCNP +L RD   +L+  + + ++ + D FP+T H+E   L
Sbjct: 357 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416

Query: 362 L 362
            
Sbjct: 417 F 417


>gi|326571866|gb|EGE21871.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           BC8]
          Length = 497

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             +L   Q + Q+  K   L+++++        I       + + YR +A   + +    
Sbjct: 115 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLKPLVGDRLGYRTKARMGVRYVAKK 174

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114
           D       ++ +     ++        I    ++ +  +  +   R  + Q++    Q+ 
Sbjct: 175 DSALVGFRERASNFLAELNECHILDKRI-GFELKNLKALITDLNARDSIPQLEIAMGQTL 233

Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
               D      +  R + +   E   +LR    AR +Q+ L  +   +   +D +     
Sbjct: 234 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLLLQPKGVDSVHRIDTEDARPT 293

Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
                        +    L Y      FTQ N  +N  M++   +     +G+ +L+L+C
Sbjct: 294 SLTVPPTGGLFYHLPNFDLTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 353

Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G GNFSLVLAR       V+ VE ++   E A+ N  AN + + +     +K+ TQ +  
Sbjct: 354 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 410

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334
                  +     + RF  + +DPPRSG  +    + +     I+Y+SCNP +L RD   
Sbjct: 411 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 463

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +    + D F +T H+E      R
Sbjct: 464 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 494


>gi|325954001|ref|YP_004237661.1| RNA methyltransferase, TrmA family [Weeksella virosa DSM 16922]
 gi|323436619|gb|ADX67083.1| RNA methyltransferase, TrmA family [Weeksella virosa DSM 16922]
          Length = 471

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 134/403 (33%), Gaps = 56/403 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEPIH-YRMRAEFHIWH- 53
                   Y+ QL  K + +   ++            L I  SE  + YR + EF   + 
Sbjct: 84  GCKWQDMHYDAQLRYKQEEVLNNLIRIGGFANLSAELLPILGSEQAYWYRNKLEFTFSNA 143

Query: 54  --------------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
                         +  +        Q  + + I          NA+ IE         L
Sbjct: 144 RWLTLEEINSTDEFNDRNALGFHIPGQWSKVLDIHRCHLQRDPSNAIRIEAKRFAIENKL 203

Query: 100 -------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
                      L  +   TSQ+ Q +V + + R   +        L D        +  I
Sbjct: 204 DFFDLYKQEGFLRTLMIRTSQNGQVMVLVQFFREEKENREAFLQNLHDKFPEITSLLYAI 263

Query: 153 GRANKTKIC-------LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
                  +           D++ E++      L ++    SF Q N       L  +   
Sbjct: 264 NPKQNDSVYDLDIHVFAGEDHIVEQM----EDLHFKIGPKSFYQTNPQQAYE-LYKLTRD 318

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             G+ G   + +LY G G  +  +++   +V+ VE    ++ AA+     N + N +   
Sbjct: 319 FAGLTGKELVYDLYTGTGTIAQFVSKKARKVVGVESVAEAIYAAKAAAELNKITNCEFFC 378

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYI 321
              K+              +D          +  DPPR G+    V   ++     I+Y+
Sbjct: 379 GDMKDVLN-----------EDFIQQHGIPDVLITDPPRDGMHKKVVENILLMNPKKIVYV 427

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           SCN  +  RDL ++   + I ++   D FP T H+E  VLL R
Sbjct: 428 SCNSATQARDLELMKEQYKIIKVQPVDMFPQTHHVENIVLLER 470


>gi|189350615|ref|YP_001946243.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|189334637|dbj|BAG43707.1| SAM-dependent methyltransferase [Burkholderia multivorans ATCC
           17616]
          Length = 465

 Score =  216 bits (549), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 138/380 (36%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + IF         YR RA   + H    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAESIFAPIHGPSWGYRYRARLTVRHVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  +A  E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 220 TALVLRVLEPI--NANDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 277

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 278 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREV 335

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+                     F    D       F  
Sbjct: 336 VGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 384

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 385 FLIDPPREGALAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 445 GVVNMFPNTSHVESIALFER 464


>gi|222110633|ref|YP_002552897.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax ebreus TPSY]
 gi|221730077|gb|ACM32897.1| RNA methyltransferase, TrmA family [Acidovorax ebreus TPSY]
          Length = 482

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 135/394 (34%), Gaps = 40/394 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWH--DG 55
              +       Q+A K   L   +        +            YR RA   + +    
Sbjct: 97  GCKMQHLHVAAQVAVKQRVLEDNLWHLGKVKAETILRPIEGPAWGYRYRARLSVRYVPKK 156

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D +     +++++    ++        ++A+++ + A I      R    QI+     + 
Sbjct: 157 DKVLVGFHERKSRYIADMETCKILPPHVDAMLMPLRALIGSMAA-RDTCPQIELACGDTV 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R L+    E   +LR    A   Q  L  +   T   LD         +  
Sbjct: 216 TALVL----RHLEPLSPEDKDKLRAFAAAHGVQWWLQPKGPDTVHLLDEGGEPLAYGLPD 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     V
Sbjct: 272 FGITMPFKPTDFTQVNPHINRVLVTRALRLLDARKDERVIDWFCGLGNFTLPIATQAREV 331

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E ++  V  +R N  +N         +++  F         F    ++ I       
Sbjct: 332 LGIEGSEALVARSRENYQSNQAQRQDGSALAATSFV----ARNLFEMTPEMLIADGASDK 387

Query: 295 IFVDPPRSGLDDATVGMV----------------------QAYPHILYISCNPDSLCRDL 332
             VDPPR G    +  +                       Q    I+Y+SCNP +L RD 
Sbjct: 388 WLVDPPREGAFALSKALADIHQARIGAEDAPPLPAGHEGWQPPRRIVYVSCNPATLARDA 447

Query: 333 SIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
            +L     +      + + FP+T H+E   +  R
Sbjct: 448 GLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 481


>gi|296112377|ref|YP_003626315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Moraxella catarrhalis
           RH4]
 gi|295920071|gb|ADG60422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Moraxella catarrhalis
           RH4]
 gi|326569193|gb|EGE19254.1| 23S rRNA 5-methyluridine methyltransferase [Moraxella catarrhalis
           BC7]
          Length = 497

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 39/391 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             +L   Q + Q+  K   L+++++        I       + + YR +A   + +    
Sbjct: 115 GCSLQHWQADAQIDFKQSVLKELLIHQAGIEPDIWLEPLVGDRLGYRTKARMGVRYVAKK 174

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114
           D       ++ +     ++        I    +E +  +  +   R  + Q++    Q+ 
Sbjct: 175 DSALVGFRERASNFLAELNECHILDKRI-GFELENLKALITDLNARDSIPQLEIAMGQTL 233

Query: 115 ----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
               D      +  R + +   E   +LR    AR +Q+ L  +   +   +D +     
Sbjct: 234 PHVPDSIKSVAVIVRHMQELDDEDLAKLRQFFAARNWQLLLQPKGVDSVHRIDTEDARPT 293

Query: 171 -----------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
                        +    L Y      FTQ N  +N  M++   +     +G+ +L+L+C
Sbjct: 294 SLTVPPTGGLFYHLPNFELTYEFSPLDFTQVNLSVNQKMMDLASSLLNLQKGERVLDLFC 353

Query: 219 GNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G GNFSLVLAR       V+ VE ++   E A+ N  AN + + +     +K+ TQ +  
Sbjct: 354 GLGNFSLVLARQVGESGFVVGVEGSEQMTERAKMNACANGIAHTEFY---AKDLTQDLSD 410

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSI 334
                  +     + RF  + +DPPRSG  +    + +     I+Y+SCNP +L RD   
Sbjct: 411 -------QPWATGNNRFDALLIDPPRSGAWEVMAYLPKFNAKRIVYVSCNPVTLARDTKA 463

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +    + D F +T H+E      R
Sbjct: 464 LIEAGYRLTHAGVMDMFSHTGHVESIARFER 494


>gi|187932009|ref|YP_001891994.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187712918|gb|ACD31215.1| RNA methyltransferase, trmA family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 449

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAIFEK 448


>gi|291618632|ref|YP_003521374.1| RumA [Pantoea ananatis LMG 20103]
 gi|291153662|gb|ADD78246.1| RumA [Pantoea ananatis LMG 20103]
          Length = 467

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 141/343 (41%), Gaps = 30/343 (8%)

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMM 91
           +I       YR R    +         +M  +Q  T + + I         + AL+I + 
Sbjct: 124 EIIAGPAWGYRRRVRLGLQWQNKTQQLLMGFRQAATNDLVDIQQCPIMVPQLEALIIPLR 183

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
             + +   ++ +L  ++ + + +   ++     R LD    +   +L    H  +  + L
Sbjct: 184 NCLTMLNAVK-RLGHVELVLADNGPVLLL----RHLDALSSDDIAKLERFSHQHQLMLFL 238

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
              +   +   DR             LI+      F Q N  +N  M+   +A       
Sbjct: 239 DDGSETLRASGDR---QPFYHSHQLELIF--SPKDFIQVNDTVNQQMVAKAIAWLDLQPE 293

Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D +L+L+CG GNF+L + +     + VE     V+ A YN   N + NVK  + + +E  
Sbjct: 294 DRVLDLFCGMGNFTLPVGKSVQSAVGVEGVAALVQQAEYNADVNALKNVKFFQHNLEEDV 353

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLC 329
                                F  + +DP R+G       +V+  P  ++Y+SCNP +L 
Sbjct: 354 SR------------QPWAMQGFNKVLLDPARAGAAGVMAHVVKLSPECVVYVSCNPVTLA 401

Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK---PSG 368
           RD   +LS  + +ER+A+ D FP+TRH+E  VL  +K   P+G
Sbjct: 402 RDSETLLSAGYQLERVAMLDMFPHTRHLESMVLFRKKYKCPAG 444


>gi|118497214|ref|YP_898264.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. novicida U112]
 gi|194323513|ref|ZP_03057290.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. novicida FTE]
 gi|143581148|sp|A0Q5J5|RUMA_FRATN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|118423120|gb|ABK89510.1| RNA methyltransferase, trmA family [Francisella novicida U112]
 gi|194322368|gb|EDX19849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. novicida FTE]
          Length = 449

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQQNNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNNKDYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|262038996|ref|ZP_06012331.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia
           goodfellowii F0264]
 gi|261746988|gb|EEY34492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia
           goodfellowii F0264]
          Length = 483

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 145/417 (34%), Gaps = 70/417 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--G 55
             T     Y  Q   K   +  ++        +    I   +   YR + EF   ++   
Sbjct: 80  GCTFQNMNYGDQTELKSSLVLNILKRAANYEFEYEKIIKSPKEFEYRNKMEFSFGNEIID 139

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGS---------------LLINALMIEMMATIRLEPL 99
             L   M  + +  + + ++                            +     I+    
Sbjct: 140 GPLTLGMHKKGSFHDIITVNECKLMDIDFRKILTATADYFRKKEEEGELSFYHRIQHIGY 199

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIG 153
           LR  + +    T +    ++T          W+E  + L         +H     +    
Sbjct: 200 LRNFVIRKGEKTGEISINLITTSQIDFDLSEWKEIMLNLELKNKIYGIIHTINDNLSDSV 259

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
           ++++  I      ++ER+      L ++    SF Q N+     +   V+     I  + 
Sbjct: 260 QSDEENILYGNRDINERI----FDLNFKISPYSFFQTNSDGVELLYGKVMEYIDVISENE 315

Query: 213 ----------------------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                                 + +L+ G G    ++++   +V  +E+ + +V+ A   
Sbjct: 316 ELNNSSIAITVIKNPQNVKDCVVFDLFSGTGTIGQIVSKKAKQVYGIELIEEAVKKANET 375

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N++ N + +                F +L +++    +   I +DPPR G+ + T+ 
Sbjct: 376 AKFNNIKNAEFIAGDV------------FEKLDELEERDVKPDIIILDPPRPGVGEKTIT 423

Query: 311 MVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  Y   +I+Y+SCNP +L +DL+I  +  + + +    D FP T H+E   LLV+
Sbjct: 424 KLLKYNVSNIIYVSCNPKTLAQDLAIFHNNGYRLVKSCPVDMFPQTPHVEVVNLLVK 480


>gi|87118650|ref|ZP_01074549.1| 23S rRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121]
 gi|86166284|gb|EAQ67550.1| 23S rRNA (uracil-5-)-methyltransferase [Marinomonas sp. MED121]
          Length = 441

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 152/376 (40%), Gaps = 41/376 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
               +   Y +Q+  K   L   +        L+I     + YR RA   +    D    
Sbjct: 94  GCCFMHLDYPEQIQAKHVWLGGQLRKLNYDGELEILSDSALAYRRRARLSVKQQKDASVK 153

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           + F  + K    I              I +   + L P L+A +  ++ L +QS+Q    
Sbjct: 154 MGF--RGKASTDI--------------IAIENCLVLMPALQAVIPHLNGLLAQSEQPQHI 197

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
                L DD      +RL   L      +      ++      +D   +++     +L +
Sbjct: 198 GHIELLEDDLGCSVLLRLTRQLSDNDQALWHEKALSQKWDLYLQDPAQDKVKCETDSLRH 257

Query: 181 RQIEN--------SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
            Q+EN         F Q N  +NV M+   L      + D +L+L+CG GNFSL +A+  
Sbjct: 258 YQVENLTIHYHPQDFIQVNQRMNVKMVAQALQWLALSEQDKVLDLFCGAGNFSLAMAKTA 317

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
           ++V+ VE+    V  A  N   N + NV  +       T+ +R E               
Sbjct: 318 EKVVGVEVQAQMVRNAERNAERNGLKNVTFIGAD---LTKTVRNE----------ALKKG 364

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
           F    +DPPR+G  +    +++     ILY+SC+  +L RD   L +  + ++R+++ + 
Sbjct: 365 FSKALLDPPRAGAFEFLPSLIKLKIDTILYVSCDAATLARDAEFLVAHGYQVKRVSMMEM 424

Query: 350 FPYTRHMECGVLLVRK 365
           FP T H+E  +LL +K
Sbjct: 425 FPQTAHVETMMLLQKK 440


>gi|161524629|ref|YP_001579641.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           multivorans ATCC 17616]
 gi|160342058|gb|ABX15144.1| RNA methyltransferase, TrmA family [Burkholderia multivorans ATCC
           17616]
          Length = 487

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 138/380 (36%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + IF         YR RA   + H    
Sbjct: 123 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAESIFAPIHGPSWGYRYRARLTVRHVAKK 182

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 183 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 241

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  +A  E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 242 TALVLRVLEPI--NANDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 299

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 300 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREV 357

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+                     F    D       F  
Sbjct: 358 VGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 406

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 407 FLIDPPREGALAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 466

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 467 GVVNMFPNTSHVESIALFER 486


>gi|163846809|ref|YP_001634853.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222524630|ref|YP_002569101.1| RNA methyltransferase, TrmA family [Chloroflexus sp. Y-400-fl]
 gi|163668098|gb|ABY34464.1| RNA methyltransferase, TrmA family [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448509|gb|ACM52775.1| RNA methyltransferase, TrmA family [Chloroflexus sp. Y-400-fl]
          Length = 416

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 91/361 (25%), Positives = 149/361 (41%), Gaps = 40/361 (11%)

Query: 10  YEQQLAEK----VDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  Q+  K     D+LR+ +    +P   +  +  P  YR  A  H+    D        
Sbjct: 82  YPAQVRYKGIIVADQLRKFLPDITIPIQPVIAAPHPWGYRNSARLHV----DGATLGYHA 137

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             TK  + +       LL+ AL   + +  RL       + ++    S +       +  
Sbjct: 138 AGTKTVVDL---ADDPLLLPALRDTLRSLRRL--AFAGLIKEVTLRASATYGYAAARL-- 190

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
               DA R    RL  A  A    +  +   ++    +   +V + L      +I+R   
Sbjct: 191 SPTPDAERHALWRLATAWKASTPVLAGVTLEDE--PFVGTPFVYDELA----GVIFRLSL 244

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            SF Q N      M+  V  A     G LL+ Y G G+F+L LAR +D V+AVE  +P+V
Sbjct: 245 GSFFQVNHAQAERMVAVVRDALAPHGGRLLDAYSGVGSFALPLARCYDEVIAVEAYQPAV 304

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E  R +   N + NV+ +  +++     +               S  F  + +DPPR G 
Sbjct: 305 EDGRQSAIDNQITNVQFINGAAEHTVAHL---------------SGPFHAVILDPPRRGC 349

Query: 305 DDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
             A +  + A+  P I+YISC+P  + RDL+ +L+  + I  +   D FP T H+E  + 
Sbjct: 350 HPALIEAIIAHAPPQIVYISCHPGLIGRDLAPLLAAGYQITFVQPVDLFPQTPHIETIIH 409

Query: 362 L 362
           L
Sbjct: 410 L 410


>gi|221212764|ref|ZP_03585740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD1]
 gi|221166977|gb|EED99447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD1]
          Length = 487

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 138/380 (36%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + IF         YR RA   + H    
Sbjct: 123 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAESIFAPIHGPSWGYRYRARLTVRHVAKK 182

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 183 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 241

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  +A  E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 242 TALVLRVLEPI--NANDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 299

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 300 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREV 357

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+                     F    D       F  
Sbjct: 358 VGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 406

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 407 FLIDPPREGALAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 466

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 467 GVVNMFPNTSHVESIALFER 486


>gi|194290012|ref|YP_002005919.1| 23S rRNA 5-methyluridine methyltransferase [Cupriavidus taiwanensis
           LMG 19424]
 gi|193223847|emb|CAQ69856.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 487

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 133/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   L   +         +           YR RA   + H    
Sbjct: 123 GCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIAGPDWGYRYRARLTVRHVVKK 182

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 183 GGVLVGFHERKSSYVADMTRCEILPPHVSAMLVPLRELVAGL-SIRDRMPQIELAVGHEV 241

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R+L+         LR      K Q  L  +   T        V+   T+  
Sbjct: 242 TALVL----RILEPLTDADKDLLRAFADQYKVQFWLQPKGPDTVYPFYPTDVELAYTLPE 297

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L       GD LL+L+CG GNF+L LA     V
Sbjct: 298 FGIRMPFKPTDFTQVNHQINRVLIGRALRLLDAQPGDRLLDLFCGIGNFTLPLATQGKSV 357

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N +        +  EF         F    D      RF  
Sbjct: 358 MGIEGSEALTTRALANAEYNGL-------AAKTEFAC----RNLFEVTADDIAALGRFDR 406

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             VDPPR G      A   + Q         I+Y+SC+P +L RD  +L     + +   
Sbjct: 407 WLVDPPREGALAVSKALGELAQQGSDVLPRRIVYVSCSPATLARDAGLLVHEAGYRLSGA 466

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP+T H+E   +  R
Sbjct: 467 GVVNMFPHTSHVESIAVFDR 486


>gi|167719262|ref|ZP_02402498.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei DM98]
 gi|254179546|ref|ZP_04886145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1655]
 gi|184210086|gb|EDU07129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1655]
          Length = 465

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 220 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 275

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRMLDLFCGIGNFTLPLARLAR 333

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 334 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 381

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 382 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 441

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 442 KGAGVVNMFPHTSHVESIALFER 464


>gi|197121913|ref|YP_002133864.1| (uracil-5)-methyltransferase [Anaeromyxobacter sp. K]
 gi|196171762|gb|ACG72735.1| (Uracil-5)-methyltransferase [Anaeromyxobacter sp. K]
          Length = 438

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 140/374 (37%), Gaps = 30/374 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
               L   Y  QLA K   L + +                +    P+ YR RA+FH  HD
Sbjct: 84  GCEWLHVAYPAQLAAKERSLHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HD 141

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
                 + F +++ E +R+      S  ++AL   +   +     L  +   +++  +  
Sbjct: 142 RAAGRLVFFRRRSHEPVRLRECHLLSPGLDALREAVGPALAAAK-LSPREVALEWSDAAE 200

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--DERLT 172
             A   L     L +       R    L A      L+ +A   +     D V    R  
Sbjct: 201 RGAAWLL-----LPEVTAPVRARAEALLRAVPSLQGLVLQAEGGQPVTAGDPVLRQARAP 255

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                   R   + F Q N G N  ++E  L        ++LEL+CG GNF+  L+    
Sbjct: 256 GRPEAGTQRSRPDVFQQANRGANARLVETALELLAPAGEEVLELHCGAGNFTGPLSERAR 315

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V AVE+  P+++ AR   A     NV+     +    +A  RE            + RF
Sbjct: 316 SVSAVEVQGPALDLAR---ADLGGRNVRFFAGDALALARAFGRE--------AGPGARRF 364

Query: 293 KTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350
               +DPPR G       +     P  +Y+SC+P +  RDL + +   + +  +   D F
Sbjct: 365 GAALLDPPREGARGIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMF 424

Query: 351 PYTRHMECGVLLVR 364
           P T H+E   LL R
Sbjct: 425 PQTHHVEGVALLER 438


>gi|237812554|ref|YP_002897005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei MSHR346]
 gi|237504204|gb|ACQ96522.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei MSHR346]
          Length = 485

 Score =  216 bits (549), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 121 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 180

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 181 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 239

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 240 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 295

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 296 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRMLDLFCGIGNFTLPLARLAR 353

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 354 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 401

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 402 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 461

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 462 KGAGVVNMFPHTSHVESIALFER 484


>gi|255536105|ref|YP_003096476.1| RNA methyltransferase, TrmA family [Flavobacteriaceae bacterium
           3519-10]
 gi|255342301|gb|ACU08414.1| RNA methyltransferase, TrmA family [Flavobacteriaceae bacterium
           3519-10]
          Length = 469

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 65/393 (16%), Positives = 137/393 (34%), Gaps = 52/393 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
            YE+QL  K D +   +              +   E   YR + EF   +      + + 
Sbjct: 91  SYEKQLDIKQDEVFNHIKRIGGFEDFETMPILGSDEQYFYRNKMEFSFSNARWLTQYEIS 150

Query: 64  DQQT---------------KERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LR 101
            ++                 + + +          N + + +        L         
Sbjct: 151 SEENFGNRNALGFHIPGMWSKILDLKECWLQEDPSNYIRLAVNQYAVANGLEFFDVRNQE 210

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR---ANKT 158
             L  +    +   + +V       L    +E  ++L D L     QI+ +     + + 
Sbjct: 211 GFLRTLMLRQNSKGEWMVLF----QLFRDEQENRVKLFDFLLKEFPQIKSLVYCINSKQN 266

Query: 159 KICLDR----DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
               D+     + +  L      L ++    SF Q N    + +    L        +++
Sbjct: 267 DSIYDQHVVTYFGEGFLMEEMDGLQFKIGPKSFFQTNYKQALQLYRKTLEFADLKGDEVV 326

Query: 215 -ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LY G G  +  +A++  +V+ +E  + ++ AA+ +   N ++N        K+     
Sbjct: 327 YDLYTGTGTIAQYVAKNAKKVIGIESVQEAINAAKEHAKLNGLDNCTFYCGDMKDIFND- 385

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331
                     +   +  +   +  DPPR G+    V  +   A   I+Y+SCN  +  RD
Sbjct: 386 ----------EFLANHPKADVLITDPPRDGMHQKVVEQILKLAPEKIVYVSCNSATQARD 435

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++++   + + ++   D FP T H+E   LLV+
Sbjct: 436 MALMKDHYRLVKILPVDMFPQTHHVENIALLVK 468


>gi|67639889|ref|ZP_00438718.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           GB8 horse 4]
 gi|254199956|ref|ZP_04906322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           FMH]
 gi|254206289|ref|ZP_04912641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           JHU]
 gi|76580093|gb|ABA49568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           pseudomallei 1710b]
 gi|147749552|gb|EDK56626.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           FMH]
 gi|147753732|gb|EDK60797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           JHU]
 gi|238520500|gb|EEP83959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia mallei
           GB8 horse 4]
          Length = 434

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 138/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 70  GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 129

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 130 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 188

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 189 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 244

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 245 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 302

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N V+ +      +  E T    R                
Sbjct: 303 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 350

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 351 FDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 410

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 411 KGAGVVNMFPHTSHVESIALFER 433


>gi|171058602|ref|YP_001790951.1| 23S rRNA 5-methyluridine methyltransferase [Leptothrix cholodnii
           SP-6]
 gi|170776047|gb|ACB34186.1| RNA methyltransferase, TrmA family [Leptothrix cholodnii SP-6]
          Length = 498

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 138/386 (35%), Gaps = 43/386 (11%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
            Q+A K   L   +        +            YR RA   + +       ++   + 
Sbjct: 93  AQVAVKQRTLEDNLWHLGKVRTERVLRPVEGPTWGYRYRARLSVRYVAKKGVVLVGFHER 152

Query: 68  KERMRID--YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS----DQAIVTL 121
           K R   D          I+A+++ +   I      R +L QI+    +S    +  +V  
Sbjct: 153 KSRYVADMRSCAVLPPHISAMLLPLRDLIDSMEA-RERLPQIELAVGESSQGLENVLVNA 211

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---ERLTVAGRTL 178
           +  R L+      A RLRD       Q  L  +  +T   LD          L   G T+
Sbjct: 212 LVLRNLEPLSAADAQRLRDFAAIHPVQWWLQPKGPETVHLLDEGVGPKLAYSLPEYGVTM 271

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
            ++     FTQ N  IN  ++   L          +++ +CG GNF+L LA     VL +
Sbjct: 272 PFK--PTDFTQVNHHINRVLVGKALGLLKVQGNERVIDWFCGLGNFTLPLATQAREVLGI 329

Query: 238 EIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           E ++  V+ +R N   N + +N      +  E + A                        
Sbjct: 330 EGSETLVQRSRENAQLNGLAHNATFAARNLFELSPADLAAY------------GSADRWL 377

Query: 297 VDPPRSGLDD--ATVGMVQAYP--------HILYISCNPDSLCRDLSIL--STTHTIERL 344
           +DPPR G       +  V+  P         I+Y+SCNP +L RD  +L     +     
Sbjct: 378 IDPPREGAFALSKALAEVRQQPIDGYTPPQRIVYVSCNPSTLARDAGLLVHQAGYRCTAA 437

Query: 345 ALFDQFPYTRHMECGVLLVRKPSGWH 370
              + FP+T H+E   +  R   GW 
Sbjct: 438 GAVNMFPHTAHVESIAVFERID-GWQ 462


>gi|221198086|ref|ZP_03571132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD2M]
 gi|221204355|ref|ZP_03577372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD2]
 gi|221175212|gb|EEE07642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD2]
 gi|221182018|gb|EEE14419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderia
           multivorans CGD2M]
          Length = 503

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 138/380 (36%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + IF         YR RA   + H    
Sbjct: 139 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAESIFSPIHGPSWGYRYRARLTVRHVAKK 198

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 199 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVERL-SIRDRMPQIELAVGSQV 257

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  +A  E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 258 TALVLRVLEPI--NANDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 315

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 316 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREV 373

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+                     F    D       F  
Sbjct: 374 VGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 422

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 423 FLIDPPREGALAVSKALADIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 482

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 483 GVVNMFPNTSHVESIALFER 502


>gi|217972409|ref|YP_002357160.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS223]
 gi|254766921|sp|B8E8S1|RUMA_SHEB2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|217497544|gb|ACK45737.1| RNA methyltransferase, TrmA family [Shewanella baltica OS223]
          Length = 450

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 139/377 (36%), Gaps = 35/377 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDD 57
              L       Q   K   L  +M  F              E  HYR RA      D + 
Sbjct: 91  GCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGTLSPALTGEGWHYRRRARLATLFDKNT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         +   + I      +  ++ L++   A +  +   +A L  ++ + + + 
Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169
              V  I   L D    +   +L       +  I L     +        +      +D+
Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDD 265

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           +      +L +     +F Q N  IN  M+   +        + +L+L+CG GNFSL LA
Sbjct: 266 KAESDAVSLSF--TPGNFVQVNGQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V+ VE     V  AR N  AN+++ +          +  +  E    ++      
Sbjct: 324 KMGADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346
                 + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L
Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGL 430

Query: 347 FDQFPYTRHMECGVLLV 363
            D FP T H+E   L  
Sbjct: 431 IDMFPQTHHIEAMALFE 447


>gi|319775797|ref|YP_004138285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           F3047]
 gi|317450388|emb|CBY86604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           F3047]
          Length = 438

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 148/364 (40%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W + +     M  +Q
Sbjct: 98  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIEMGFRQ 156

Query: 67  TK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
               + + I         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNANDLIPIQSCEVAEPAINHLLPKLTALLEQFSAPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  ++++    ++++Y D         +      
Sbjct: 215 KKLAEIDRTLLLKF-----AEQEKLMLFLQSDEG---IEQNYGDAPYYQFSDGIKLHFDI 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNRALNERMVNTALDWLELNQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N   N + N+   +    +               D       F  I +DPPRSG
Sbjct: 327 VQKAAQNAERNQIKNITFFQADLGQ------------SFVDQPWSHQSFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCELNAEKILYVSCNPATLVRDAEILRDFGYKIEKSAVIDMFPHTGHLESITL 434

Query: 362 LVRK 365
              K
Sbjct: 435 FTTK 438


>gi|120598069|ref|YP_962643.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella sp. W3-18-1]
 gi|143582575|sp|A1RHE4|RUMA_SHESW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120558162|gb|ABM24089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella sp.
           W3-18-1]
          Length = 450

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 139/377 (36%), Gaps = 35/377 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57
              L       Q   K   L  +M  F              E  HYR RA      D + 
Sbjct: 91  GCDLQHMSLSGQREHKEAALLDIMAKFAGTEGGALSPALTGEGWHYRRRARLATLFDKNT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         +   + I      +  ++ L++   A +  +   +A L  ++ + + + 
Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169
              V  I   L D    +   +L       +  I L     +        +      +DE
Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIYICLQDNEGQFQGVGVELVLPVYQLLDE 265

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
                  +L +     +F Q N+ IN  M+   +        + +L+L+CG GNFSL LA
Sbjct: 266 NAQSDAVSLSF--TPGNFVQVNSQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V+ VE     V  AR N  AN+++ +          +  +  E    ++      
Sbjct: 324 KMGADVIGVEGVAEMVSQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346
                 + +DP R+G  ++   + +  P  +LY+SCNP SL RD   +L   + ++RL L
Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSAVLLERGYRLQRLGL 430

Query: 347 FDQFPYTRHMECGVLLV 363
            D FP T H+E   L  
Sbjct: 431 IDMFPQTHHIEAMALFE 447


>gi|288941731|ref|YP_003443971.1| TrmA family RNA methyltransferase [Allochromatium vinosum DSM 180]
 gi|288897103|gb|ADC62939.1| RNA methyltransferase, TrmA family [Allochromatium vinosum DSM 180]
          Length = 440

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 130/373 (34%), Gaps = 26/373 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
              L     E Q+  K D L  +         +       +E   YR +A   + H    
Sbjct: 84  GCALQHLNPEAQIRVKHDSLADVFERIGKVTPERWLDPLTAESWGYRRKARLGVRHVVKK 143

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   +++      +         +   +  + ATI     +R  + QI+       
Sbjct: 144 GRTLVGFRERRNSFLADLRRCEVLHPQVGERLETLAATIETL-SIRDHVPQIEMAMGDGP 202

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +V     R++     E   RL +      + I L      +   L    V    ++  
Sbjct: 203 CVLV----FRVMQTPTPEDEARLLELGQREGFHIYLQDGGIDSIRPLPGQEVALSYSLPN 258

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +    + + FTQ N  +N  M++  L        D +L+L+CG GNF+L LAR    V
Sbjct: 259 HGVEIGFLPSDFTQVNLELNRRMVDQALDLLAPESDDAVLDLFCGLGNFTLPLARRSAEV 318

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     VE A  N   N + NV+                 +            RF  
Sbjct: 319 VGVEGDAGLVERACANAERNGLTNVQFHVAD-----------LQAELSTAAPWTQQRFTK 367

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
             +DPPRSG  +    + +     ++Y+SC P +L RD   L     + +    + D FP
Sbjct: 368 ALIDPPRSGAWEVLDWLPRLGVERLVYVSCYPTTLARDADRLVNELGYRLRAAGVMDMFP 427

Query: 352 YTRHMECGVLLVR 364
           +T H+E   L  R
Sbjct: 428 HTSHVESMALFER 440


>gi|291320650|ref|YP_003515915.1| hypothetical protein MAGa7590 [Mycoplasma agalactiae]
 gi|290752986|emb|CBH40962.1| Hypothetical RNA methyltransferase [Mycoplasma agalactiae]
          Length = 446

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 76/378 (20%), Positives = 149/378 (39%), Gaps = 31/378 (8%)

Query: 2   SGTLLIDQ--YEQQLAEKVDRLRQMMLA--FQVPNLQIFRSE-PIHYRMRAEFHIWHDGD 56
           SG+  +    Y  QL  K + ++Q+          L I +S+    YR +      +  +
Sbjct: 80  SGSAPLANISYSNQLEFKENFVKQLFKRNIHYTDILPILKSDYEWRYRNKLLLFTKNVQN 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT---SQ 113
            +   ++++ +   +  D +   S     ++I +   I      +     +  +T   S 
Sbjct: 140 TIKIGLYEKNSHNLIEQDSYDLVSNEAENVLIWLSKNINKYDCFKNVKNALTGITLRESY 199

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           +++ I+         D  ++    +       +  + ++          ++ Y+ +++  
Sbjct: 200 ANKNIMLYFTTSKAFDLSKQFVNDIAKEFDHIETIMVIVNDKVVYSYLSEKPYLIDKIG- 258

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD 232
                 ++   NSF Q N+     +   +L      +  + L+ YCG G  SL LA+   
Sbjct: 259 ---KFSFKYNWNSFFQINSNQTEKLYSLLLDNLNLDKSKVVLDAYCGIGTISLFLAQKAK 315

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V  +EI K +V  A+ N   N ++N + +                   +K ID  + + 
Sbjct: 316 KVYGLEIVKEAVINAKENALDNSIHNTEFISGDV---------------IKTIDSINEKI 360

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
            T+ VDPPRSGL    +  +       I YISCNP ++CRD+  L    + +  L   D 
Sbjct: 361 DTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCRDIDQLIKAGYELSFLRPCDM 420

Query: 350 FPYTRHMECGVLLVRKPS 367
           F  T H+E   +L  K +
Sbjct: 421 FSQTYHIEMVAVLKLKDT 438


>gi|187928146|ref|YP_001898633.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia pickettii
           12J]
 gi|226725385|sp|B2U9U3|RUMA_RALPJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|187725036|gb|ACD26201.1| RNA methyltransferase, TrmA family [Ralstonia pickettii 12J]
          Length = 450

 Score =  215 bits (547), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 137/386 (35%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +         +           YR RA   + H    
Sbjct: 83  GCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 142

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +    ++  ++ QI+    Q  
Sbjct: 143 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIELAVGQDV 201

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172
            A+V     R L+    E    LR        Q  L  +   T      LDR  +   L 
Sbjct: 202 TALVL----RNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYPLDR-TLTYTLP 256

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
             G T+ ++     FTQ N  IN  ++   L       GD LL+L+CG GNF+L +A   
Sbjct: 257 EFGITMPFK--PTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRA 314

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ +E ++     A  N   N ++              +      F    D      +
Sbjct: 315 REVMGIEGSEALTTRALANAQHNGLHT-----------KTSFACRNLFEVSADDVAALGK 363

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STT 338
           F    +DPPR G    +  + +               I+Y+SCNP +L RD  +L     
Sbjct: 364 FDRWLIDPPREGALAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAG 423

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +    + + FP+T H+E   +  R
Sbjct: 424 YRLAGAGVVNMFPHTSHVESMAVFER 449


>gi|319427232|gb|ADV55306.1| RNA methyltransferase, TrmA family [Shewanella putrefaciens 200]
          Length = 450

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 138/377 (36%), Gaps = 35/377 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57
              L       Q   K   L  +M  F              E  +YR RA      D + 
Sbjct: 91  GCDLQHMSLSGQREHKEAALLDIMAKFAGTEGGALSPALTGEGWYYRRRARLATLFDKNT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         +   + I      +  ++ L++   A +  +   +A L  ++ + + + 
Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169
              V  I   L D    +   +L       +  I L     +        +      +DE
Sbjct: 210 HFAVLRITKALND----KDLTKLSAFAEQHQIHICLQDNEGQFQGVGVELVLPVYQLLDE 265

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
                  +L +     +F Q N  IN  M+   +        + +L+L+CG GNFSL LA
Sbjct: 266 NAQSDAVSLSF--TPGNFVQVNGQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V+ VE     V  AR N  AN+++ +          +  +  E    ++      
Sbjct: 324 KMGAEVIGVEGVAEMVSQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346
                 + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + ++RL L
Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQRLGL 430

Query: 347 FDQFPYTRHMECGVLLV 363
            D FP T H+E   L  
Sbjct: 431 IDMFPQTHHIEAMALFE 447


>gi|329123639|ref|ZP_08252199.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC
           11116]
 gi|327469838|gb|EGF15303.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus aegyptius ATCC
           11116]
          Length = 438

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 152/364 (41%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W +       M  +Q
Sbjct: 98  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIDMGFRQ 156

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  +++K    +++ Y D         +      
Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N   N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 327 VQKAAQNAERNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434

Query: 362 LVRK 365
              K
Sbjct: 435 FTTK 438


>gi|126175348|ref|YP_001051497.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS155]
 gi|226725386|sp|A3D7B5|RUMA_SHEB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|125998553|gb|ABN62628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella baltica
           OS155]
          Length = 450

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 139/377 (36%), Gaps = 35/377 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57
              L       Q   K   L  +M  F          E      HYR RA      D + 
Sbjct: 91  GCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGTLSPELTGEGWHYRRRARLATLFDKNT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         +   + I      +  ++ L++   A +  +   +A L  ++ + + + 
Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLTAKASLGHLELIAADNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169
              V  I   L D    +   +L       +  I L     +        +      +D+
Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDD 265

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA 228
           +      +L +     +F Q N  IN  M+   +      +   +L+L+CG GNFSL LA
Sbjct: 266 KAESDAVSLSF--TPGNFVQVNGQINKAMVAQAMDWLAPALDERILDLFCGMGNFSLPLA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V+ VE     V  AR N  AN+++ +          +  +  E    ++      
Sbjct: 324 KMGADVIGVEGVAEMVTQARVNAKANNLDKLTFFHGD---LSADLSLEPWMGKI------ 374

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346
                 + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L
Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGL 430

Query: 347 FDQFPYTRHMECGVLLV 363
            D FP T H+E   L  
Sbjct: 431 IDMFPQTHHIEAMALFE 447


>gi|304410178|ref|ZP_07391797.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183]
 gi|307302111|ref|ZP_07581869.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175]
 gi|304351587|gb|EFM15986.1| RNA methyltransferase, TrmA family [Shewanella baltica OS183]
 gi|306914149|gb|EFN44570.1| RNA methyltransferase, TrmA family [Shewanella baltica BA175]
          Length = 450

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 139/377 (36%), Gaps = 35/377 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57
              L       Q   K   L  +M  F              E  HYR RA      D + 
Sbjct: 91  GCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGALSPALTGEGWHYRRRARLATLFDKNT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         +   + I      +  ++ L++   A +  +   +A L  ++ + + + 
Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169
              V  I   L D    +   +L       +  I L     +        +      +D+
Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDD 265

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           +      +L +     +F Q N  IN  M+   +        + +L+L+CG GNFSL LA
Sbjct: 266 KAESDAVSLSF--TPGNFVQVNGQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V+ VE     V  AR N  AN+++ +          +  +  E    ++      
Sbjct: 324 KMGADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346
                 + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L
Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGL 430

Query: 347 FDQFPYTRHMECGVLLV 363
            D FP T H+E   L  
Sbjct: 431 IDMFPQTHHIEAMALFE 447


>gi|16272285|ref|NP_438497.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae
           Rd KW20]
 gi|260581201|ref|ZP_05849020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           RdAW]
 gi|1723812|sp|P44643|RUMA_HAEIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|1573302|gb|AAC21995.1| RNA methyltransferase, putative [Haemophilus influenzae Rd KW20]
 gi|260092126|gb|EEW76070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           RdAW]
          Length = 438

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 152/364 (41%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W +       M  +Q
Sbjct: 98  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIEMGFRQ 156

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  +++K    +++ Y D         +      
Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N   N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 327 VQKAAQNAERNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCNFGYKIEKSAVIDMFPHTGHLESITL 434

Query: 362 LVRK 365
              K
Sbjct: 435 FTTK 438


>gi|167587043|ref|ZP_02379431.1| RNA methyltransferase, TrmA family protein [Burkholderia ubonensis
           Bu]
          Length = 451

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 138/380 (36%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +L       +            YR RA   + +    
Sbjct: 87  GCSMQHLDMRAQVAIKQRVLEDNLLHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVVKK 146

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 147 GGVLVGFHERKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  +A  E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 206 TALVLRVLEPI--NAADEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEFG 263

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 264 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAREV 321

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+                     F    D       F  
Sbjct: 322 MGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 370

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 371 FLIDPPREGALAVSKALADIAQSGEGPLPRRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 430

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP+T H+E   L  R
Sbjct: 431 GVVNMFPHTSHVESIALFER 450


>gi|160876396|ref|YP_001555712.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS195]
 gi|226725388|sp|A9KYI1|RUMA_SHEB9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|160861918|gb|ABX50452.1| RNA methyltransferase, TrmA family [Shewanella baltica OS195]
 gi|315268586|gb|ADT95439.1| RNA methyltransferase, TrmA family [Shewanella baltica OS678]
          Length = 450

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 139/377 (36%), Gaps = 35/377 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57
              L       Q   K   L  +M  F              E  HYR RA      D + 
Sbjct: 91  GCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGALSPALTGEGWHYRRRARLATLFDKNT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         +   + I      +  ++ L++   A +  +   +A L  ++ + + + 
Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169
              V  I   L D    +   +L       +  I L     +        +      +D+
Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDD 265

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           +      +L +     +F Q N  IN  M+   +        + +L+L+CG GNFSL LA
Sbjct: 266 KAESDAVSLSF--TPGNFVQVNGQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V+ VE     V  AR N  AN+++ +          +  +  E    ++      
Sbjct: 324 KMGADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346
                 + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L
Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGL 430

Query: 347 FDQFPYTRHMECGVLLV 363
            D FP T H+E   L  
Sbjct: 431 IDMFPQTHHIEAMALFE 447


>gi|327395011|dbj|BAK12433.1| 23S rRNA 5-methyluridine methyltransferase RumA [Pantoea ananatis
           AJ13355]
          Length = 439

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 138/337 (40%), Gaps = 27/337 (8%)

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMM 91
           +I       YR R    +         +M  +Q  T + + I         + AL+I + 
Sbjct: 124 EIIAGPAWGYRRRVRLGLQWQNKTQQLLMGFRQAATNDLVDIQQCPIMVPQLEALIIPLR 183

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
             + +   ++ +L  ++ + + +   ++     R LD    +   +L    H  +  + L
Sbjct: 184 NCLTMLNAVK-RLGHVELVLADNGPVLLL----RHLDALSTDDIAKLERFSHQHQLMLFL 238

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
              +   +   DR             LI+      F Q N  +N  M+   +A       
Sbjct: 239 DDGSETLRASGDR---QPFYHSHQLELIF--SPKDFIQVNDTVNQQMVAKAIAWLDLQPE 293

Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D +L+L+CG GNF+L + +     + VE     V+ A YN   N + NVK  + + +E  
Sbjct: 294 DRVLDLFCGMGNFTLPVGKSVQSAVGVEGVAALVQQAEYNADVNALKNVKFFQHNLEEDV 353

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLC 329
                                F  + +DP R+G       +V+  P  ++Y+SCNP +L 
Sbjct: 354 SR------------QPWAMQGFNKVLLDPARAGAAGVMAHVVKLSPECVVYVSCNPVTLA 401

Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD   +LS  + +ER+A+ D FP+TRH+E  VL  +K
Sbjct: 402 RDSETLLSAGYQLERVAMLDMFPHTRHLESMVLFRKK 438


>gi|330960598|gb|EGH60858.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 451

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 141/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVTPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + ID        +  +M ++   ++        L  ++  +  S 
Sbjct: 159 KRLDVGFRAAASQDIVSIDECPVLVQALQPIMRQLPTMLKSFSK-PQVLGHVELFSGSS- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            + V L +   L DA       L+        Q+ L G           D +   L    
Sbjct: 217 -SAVLLRHTAPLADA---DLATLQAFCSTHGAQLWLHGEGEPQPASPG-DTLGYWLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L     G    +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPGPDERVMDLFCGLGNFALPLAGLAKEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAANAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD   L +  + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELVNQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|148827480|ref|YP_001292233.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus influenzae
           PittGG]
 gi|148718722|gb|ABQ99849.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           PittGG]
          Length = 438

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 152/364 (41%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W +       M  +Q
Sbjct: 98  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIDMGFRQ 156

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  +++K    +++ Y D         +      
Sbjct: 215 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDI 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N   N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 327 VQKAAQNAERNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434

Query: 362 LVRK 365
              K
Sbjct: 435 FTTK 438


>gi|257126314|ref|YP_003164428.1| RNA methyltransferase, TrmA family [Leptotrichia buccalis C-1013-b]
 gi|257050253|gb|ACV39437.1| RNA methyltransferase, TrmA family [Leptotrichia buccalis C-1013-b]
          Length = 474

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 66/402 (16%), Positives = 157/402 (39%), Gaps = 58/402 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
                + +YE+QL  K   L +++      +L        I   + I+YR +     +  
Sbjct: 87  GCDFGMLKYEKQLEYKDKMLEEVLTKIAEIDLKKVKISKIIGSDKKINYRNKTAEPFFKK 146

Query: 55  GDDLYHIMFDQQTKERMRIDYFM----PGSLLINALMIEMMATIRLEPLLR--------A 102
              +    + +++         +       ++I+  + ++ +    +   +         
Sbjct: 147 NGIIQTGFYSRKSHNVFSAKESLLKSEIAKIIIDKFLQKVNSFAGTKKEFKVFNEVNNTG 206

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIG 153
            L QI    ++ D+ ++ ++ ++          L++ + E    ++    + K +   + 
Sbjct: 207 FLKQIMIRNNEKDEVMIVVVVNKNSQYNQLSKVLEEMYDENDC-IKSIYISVKTEQNNVI 265

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
              K        Y++E +      L ++   NSF Q N    + + +  +        + 
Sbjct: 266 LG-KNVHLFGSQYLEEEM----EGLKFKIYPNSFFQINKKQALKLYDAAINFLNEENKNI 320

Query: 213 -------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                  +++ + G G  +++L+++  +V+ +E  + S  AA+     N + NV+ V   
Sbjct: 321 DKIYEKTVIDAFSGTGTIAMMLSKNIKKVIGIESIESSTLAAKLTSYENSIQNVEFVNGK 380

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
            ++    + +  +                I  DPPR G++++ +  V       I+YISC
Sbjct: 381 VEKELPKILKREDVG-------------AIVFDPPRRGIEESALKSVVKNKIEKIVYISC 427

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           NP +  RD+ IL+   + + ++A  D FP T H+E   ++ R
Sbjct: 428 NPATFARDVKILAENGYVLRKVAPVDMFPQTGHIEVVGMIQR 469


>gi|83747940|ref|ZP_00944971.1| 23S rRNA m(5)U 1939 methyltransferase [Ralstonia solanacearum
           UW551]
 gi|83725358|gb|EAP72505.1| 23S rRNA m(5)U 1939 methyltransferase [Ralstonia solanacearum
           UW551]
          Length = 502

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 137/385 (35%), Gaps = 40/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   L   +         +           YR RA   + H    
Sbjct: 135 GCSMQHLDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 194

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +    ++  ++ Q++    Q  
Sbjct: 195 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQVEVAVGQDV 253

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            A+V     R+L+         LR     HA ++ +Q  G             +   L  
Sbjct: 254 TALVL----RILEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPE 309

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G T+ ++     FTQ N  IN  ++  VL       GD LL+L+CG GNF+L +A    
Sbjct: 310 FGITMPFK--PTDFTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGR 367

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++     A  N   N +           +          F    D      RF
Sbjct: 368 EVMGIEGSETLTTRALANAQHNGL-----------DAKTTFACRNLFEVSADDIAALGRF 416

Query: 293 KTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STTH 339
               VDPPR G    +  + +               I+Y+SCNP +L RD  +L     +
Sbjct: 417 DRWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGY 476

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +    + + FP+T H+E   +  R
Sbjct: 477 RLSGAGVVNMFPHTSHVESIAVFDR 501


>gi|269839722|ref|YP_003324414.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791452|gb|ACZ43592.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 397

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/363 (22%), Positives = 138/363 (38%), Gaps = 67/363 (18%)

Query: 10  YEQQLAEKVDRLRQMMLA---FQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           YE QL  K   +   +     F+ P +   +   +P  YR  A F I  +G   Y     
Sbjct: 91  YEHQLELKRKLVIDQLAKRGGFESPPVTATLPSPQPYGYRNHARFSIDEEGRLGYVSRPG 150

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
              +  M+I+  +     IN                       + L +   +A       
Sbjct: 151 SG-RRFMQIERCLILHPWIN-----------------------EALRTFQGKAA------ 180

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
                      +++R  +H  +Y +     A +  I   + +  E L        +R  +
Sbjct: 181 -------GHHQVQVRYGVHTGEYLVFPDLNAVEPSIPSGQRFYHEELL----GHRFRISD 229

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +SF Q N      M + V+   +    +++ + Y G G F+++LA    RV+A+E +  +
Sbjct: 230 SSFFQTNTLQAERMAQLVIERCQLRGEEVVVDAYAGVGTFAVLLAPRARRVIAIEESAAA 289

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A  NI    V N++ VR  ++E    M                 + + + +DPPR G
Sbjct: 290 VADAMVNIE--GVPNIEYVRGKTEEVLGEMAE---------------QPEVLILDPPRVG 332

Query: 304 LDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGV 360
                +  V   A   ++Y+SC+P SL RDL  L    + +  +   D FP T H+EC  
Sbjct: 333 CHPKALQAVVSLAPARVVYVSCDPGSLARDLRKLCDGGYQLVEVTPVDMFPQTHHIECVA 392

Query: 361 LLV 363
            LV
Sbjct: 393 TLV 395


>gi|207743450|ref|YP_002259842.1| rna methyltransferase protein [Ralstonia solanacearum IPO1609]
 gi|206594847|emb|CAQ61774.1| rna methyltransferase protein [Ralstonia solanacearum IPO1609]
          Length = 448

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 137/385 (35%), Gaps = 40/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   L   +         +           YR RA   + H    
Sbjct: 81  GCSMQHLDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +    ++  ++ Q++    Q  
Sbjct: 141 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQVEVAVGQDV 199

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            A+V     R+L+         LR     HA ++ +Q  G             +   L  
Sbjct: 200 TALVL----RILEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPE 255

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G T+ ++     FTQ N  IN  ++  VL       GD LL+L+CG GNF+L +A    
Sbjct: 256 FGITMPFK--PTDFTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGR 313

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++     A  N   N +           +          F    D      RF
Sbjct: 314 EVMGIEGSETLTTRALANAQHNGL-----------DAKTTFACRNLFEVSADDIAALGRF 362

Query: 293 KTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STTH 339
               VDPPR G    +  + +               I+Y+SCNP +L RD  +L     +
Sbjct: 363 DRWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +    + + FP+T H+E   +  R
Sbjct: 423 RLSGAGVVNMFPHTSHVESIAVFDR 447


>gi|262377436|ref|ZP_06070659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter lwoffii
           SH145]
 gi|262307666|gb|EEY88806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter lwoffii
           SH145]
          Length = 462

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 151/375 (40%), Gaps = 42/375 (11%)

Query: 11  EQQLAEKVDRLRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFD 64
           + Q+  K + L+  +  F        L   RS+   YR +A   + +    D L     +
Sbjct: 107 DAQIELKQNVLKSHLQHFAGIQPDQWLPPLRSQREDYRRKARIGVRYLPSKDQLVVGFRE 166

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----RAKLFQIDYLTSQSDQAIV 119
            Q+ +   ID  M        L  E  +   L+ LL     +A +  I+      D A++
Sbjct: 167 NQSNKLTSIDRCMI-------LDREFGSVTGLKQLLQGLNGKADIGHIELAMGDQDIALL 219

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL- 178
                +L  D       +LR+    + +Q+ L     +T   +D      RL        
Sbjct: 220 VRETAKLSAD----DVNQLREFTLQKGWQLYLQPAGKETLSRIDDPEASARLHYGLDDFD 275

Query: 179 -IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---R 233
             +      FTQ N+ IN  M+       +  QG+ +L+L+CG GNFSL LAR      +
Sbjct: 276 VKFGFNPLDFTQVNSSINPQMVRLACDLLQLQQGERVLDLFCGLGNFSLPLARCVGASGQ 335

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+AVE +   V     N   N +  +      S++ T+        N+          F 
Sbjct: 336 VIAVEGSDEMVRRGAENAKNNGIAQISFY---SQDLTKDFSHHTWANQ---------GFD 383

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
            + +DPPR+G ++    + Q     I+Y+SCNP +L RD  +L    + + +  + D F 
Sbjct: 384 ALLIDPPRAGAEEVMHYIPQFGAKRIVYVSCNPATLARDAGLLVQQGYRLTQAGVMDMFT 443

Query: 352 YTRHMECGVLLVRKP 366
           +T H+E   L  ++ 
Sbjct: 444 HTGHVESIALFEKEN 458


>gi|291525750|emb|CBK91337.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale DSM
           17629]
          Length = 471

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/404 (19%), Positives = 145/404 (35%), Gaps = 61/404 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF--------RSEPIHYRMRAEFHIW- 52
             T     YE+QL  K+ ++++++        +            +   YR + EF    
Sbjct: 80  GCTYQTVPYEKQLDMKLTQVKKLISDAIGTEEESGYEFIGIHGSPKKSEYRNKMEFSFGD 139

Query: 53  -HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLE-----------PL 99
            +    L   M  + +  + + +            ++   +                   
Sbjct: 140 EYKDGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIPYFHRATHKGY 199

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-----------RECAIRLRDALHARKYQ 148
           LR  L +    T +    +VT       ++             R      +  LH +   
Sbjct: 200 LRHLLVRKATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGIFKGVLHTKNDS 259

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
           +  + +   T++     Y  E L      L ++    SF Q N+     + E       G
Sbjct: 260 VADVVKNEGTEVLYGDSYFYEELL----GLKFKITPFSFFQTNSLGAEVLYETAREFILG 315

Query: 209 IQGD------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              D      + +LY G G  + ++A     V+ VEI + +V AA+ N A N ++N K +
Sbjct: 316 DDKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALNGLDNCKFI 375

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320
                              LK +D    +   I +DPPR G+    +G +  Y   +++Y
Sbjct: 376 AGDV---------------LKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVY 420

Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           ISC P SL RDL I     + +E++   D FP T H+EC +++ 
Sbjct: 421 ISCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVECVIMMQ 464


>gi|325479240|gb|EGC82336.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 455

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 146/386 (37%), Gaps = 50/386 (12%)

Query: 10  YEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIH-YRMRAEFHIWHDGDDLYHIMFDQ 65
           YE +L  KVD +++M          +++I +S     YR + E+           ++   
Sbjct: 89  YETELMLKVDMIKKMFEENDISYQGDIKINQSPKTRAYRNKMEYTFGDREKGGELVLGLH 148

Query: 66  QTKERMRIDYFMPGSLLINALMI--------------EMMATIRLEPLLRAKLFQIDYLT 111
           +      I      +++ N   I              E       E LLR  + +  + T
Sbjct: 149 RQNRFYEIVSTKDCNIVDNDFNIIRSNVEEYFRDKKTEFYHKTTNEGLLRHLIVRKAHRT 208

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDA---------LHARKYQIQLIGRANKTKICL 162
           S+    +VT       D        +L D+          H     +       K  +  
Sbjct: 209 SELMVILVTTSDTSFDDIRKNLFLNKLLDSKVEGKIVSVFHVINDSVADAVIPQKINLLY 268

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            +D++ E +      L ++    SF QPN      + +     A    Q D+L+LY G G
Sbjct: 269 GKDHIVEEML----GLNFKISPFSFFQPNIYTAEKLYQKAFDLAKIDGQMDILDLYSGTG 324

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             + V+A        +EI + +V+ A  N   N + N+  +                   
Sbjct: 325 TITQVMATQAKSATGIEIVREAVDKAWENSKLNDIKNIDFLCGDV--------------- 369

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STT 338
           L++I+    ++  + +DPPR+G+   ++  +        +YISCNP +   ++    S+ 
Sbjct: 370 LEEIEKVGNKYDVVILDPPRAGISSNSLEKILKIDTKKFIYISCNPKTQVENIKEFTSSG 429

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + I+   LFDQFP +RH+E   LL +
Sbjct: 430 YKIKDYELFDQFPRSRHLEAIALLEK 455


>gi|121594754|ref|YP_986650.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax sp. JS42]
 gi|143580440|sp|A1W8J9|RUMA_ACISJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120606834|gb|ABM42574.1| 23S rRNA m(5)U-1939 methyltransferase [Acidovorax sp. JS42]
          Length = 482

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 135/394 (34%), Gaps = 40/394 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWH--DG 55
              +       Q+A K   L   +        +            YR RA   + +    
Sbjct: 97  GCKMQHLHVAAQVAVKQRVLEDNLWHLGKVKAETILRPIEGPAWGYRYRARLSVRYVPKK 156

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D +     +++++    ++        ++A+++ + A I      R    QI+     + 
Sbjct: 157 DKVLVGFHERKSRYIADMETCKILPPHVDAMLMPLRALIGSMAA-RDTCPQIELACGDTV 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R L+    E   +LR        Q  L  +  +T   LD         +  
Sbjct: 216 TALVL----RHLEPLSPEDKDKLRAFAAVHGVQWWLQPKGPETVHLLDEGGEPLAYGLPD 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     V
Sbjct: 272 FGITMPFKPTDFTQVNPHINRVLVTRALRLLDARKDERVIDWFCGLGNFTLPIATQAREV 331

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E ++  V  +R N  +N         +++  F         F    ++ I       
Sbjct: 332 LGIEGSEALVARSRENYQSNQAQRQDGSALAATSFV----ARNLFEMTPEMLIADGASDK 387

Query: 295 IFVDPPRSGLDDATVGMV----------------------QAYPHILYISCNPDSLCRDL 332
             VDPPR G    +  +                       Q    I+Y+SCNP +L RD 
Sbjct: 388 WLVDPPREGAFALSKALADIHQARIGAEDAPPLPAGHEGWQPPRRIVYVSCNPATLARDA 447

Query: 333 SIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
            +L     +      + + FP+T H+E   +  R
Sbjct: 448 GLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 481


>gi|146293860|ref|YP_001184284.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella putrefaciens
           CN-32]
 gi|226725391|sp|A4Y952|RUMA_SHEPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|145565550|gb|ABP76485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Shewanella
           putrefaciens CN-32]
          Length = 450

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 139/377 (36%), Gaps = 35/377 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDD 57
              L       Q   K   L  +M  F              E  HYR RA      D + 
Sbjct: 91  GCDLQHMSLSGQREHKEAALLDIMAKFAGTEGGALSPALTGEGWHYRRRARLATLFDKNT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         +   + I      +  ++ L++   A +  +   +A L  ++ + + + 
Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDE 169
              V  I   L D    +   +L       +  I L     +        +      +DE
Sbjct: 210 HFAVLRITKALND----KDLAKLSAFAEQHQIYICLQDNEGQFQGVGVELVLPVYQLLDE 265

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
                  +L +     +F Q N+ IN  M+   +        + +L+L+CG GNFSL LA
Sbjct: 266 NAQSDAVSLSF--TPGNFVQVNSQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLA 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V+ VE     V  AR N  AN+++ +          +  +  E    ++      
Sbjct: 324 KMGADVIGVEGVAEMVSQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI------ 374

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLAL 346
                 + +DP R+G  ++   + +  P  +LY+SCNP SL RD   +L   + ++RL L
Sbjct: 375 ----DKLLLDPARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSTVLLERGYRLQRLGL 430

Query: 347 FDQFPYTRHMECGVLLV 363
            D FP T H+E   L  
Sbjct: 431 IDMFPQTHHIEAMALFE 447


>gi|299067260|emb|CBJ38457.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Ralstonia
           solanacearum CMR15]
          Length = 482

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 135/386 (34%), Gaps = 42/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   +   +         +           YR RA   + H    
Sbjct: 115 GCSMQHLDSRAQLAIKQRVMEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 174

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++   + +         ++AL++ +   +    +   ++ QI+    +  
Sbjct: 175 GGVLVGFHERKSSYVVDMTSCEVLPPHVSALLVPLRELVGRLSIF-QRMPQIEVAVGEDV 233

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172
            A+V     R+L+         LR        Q  L  +   T      LDR  +   L 
Sbjct: 234 TALVL----RILEPLTSADEAELRTFADQHAVQFWLQPKGPDTVYPFYPLDR-ALTYTLP 288

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
             G T+ ++     FTQ N  IN  ++   L       GD LL+L+CG GNF+L +A   
Sbjct: 289 EFGITMPFK--PTDFTQVNHQINRVLMSRALKLLDARPGDRLLDLFCGIGNFTLPMATRG 346

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ +E ++     A  N   N +           +          F    D      R
Sbjct: 347 CEVMGIEGSETLTTRALANAQHNGL-----------DAKVTFACRNLFEVSADDIAALGR 395

Query: 292 FKTIFVDPPRSGL---DDATVGM--------VQAYPHILYISCNPDSLCRDLSIL--STT 338
           F    VDPPR G      A   +              I+Y+SCNP +L RD  +L     
Sbjct: 396 FDRWLVDPPREGALAVSKAVAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAG 455

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +    + + FP+T H+E   +  R
Sbjct: 456 YRLAGAGVVNMFPHTSHVESIAVFER 481


>gi|134302402|ref|YP_001122372.1| 23S rRNA 5-methyluridine methyltransferase [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134050179|gb|ABO47250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Francisella tularensis
           subsp. tularensis WY96-3418]
          Length = 449

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGELTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|270284909|ref|ZP_06194303.1| rRNA methyltransferase [Chlamydia muridarum Nigg]
 gi|270288937|ref|ZP_06195239.1| rRNA methyltransferase [Chlamydia muridarum Weiss]
 gi|14195332|sp|P58106|Y118_CHLMU RecName: Full=Uncharacterized RNA methyltransferase TC_0118
          Length = 397

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 161/399 (40%), Gaps = 56/399 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55
             +    +YE  L  K   L  +     +P+ +I      S  +  R + EF  +   DG
Sbjct: 16  GCSSPQTEYELSLKAKELALHNLFSPL-IPSQKILPVIPCSPILRGRNKMEFSFYQTVDG 74

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSL----LIN------ALMIEMMATIR--LEPLLRAK 103
           +     +   + K+ + I   +        ++N      A   E+ A      +  L   
Sbjct: 75  EKTLGFISPSKPKKGIPITECLMIDERAIDILNYTRSWWATHPELSAYYPPLNKGSLCTL 134

Query: 104 LFQIDYLTSQSD--------------QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
             +I  +++                  +++      LLD      +I   + L AR    
Sbjct: 135 TVRIGNVSNDFMIILTTSGREEFAVPLSVIQEWQKTLLDSGLPITSIFWEEKLSARNSPT 194

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                  +T       ++ ++L++ GR+ I+     SF QP +     +++ +       
Sbjct: 195 TF-----RTTHLYGEQFLKQQLSIEGRSNIFHVRPRSFFQPQSRQAEKIIQTIKDFISPT 249

Query: 210 -QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  LL+LYCG G   + L+ +  +++ VE+   +V +A+ NI  N   N+++    +K+
Sbjct: 250 GEETLLDLYCGAGTIGISLSPYVKKIIGVELVPDAVASAQENIQLNSA-NMEVFLEDAKQ 308

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
           F       R    L  +DI       + +DPPR G+ +  +  +       I+Y+SCNP 
Sbjct: 309 FC------RRHEHLPPLDI-------VVIDPPRCGMQNKALKYLLRMSPKKIIYVSCNPL 355

Query: 327 SLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +   + SIL    + ++R+   DQFP+T H+E  VLL R
Sbjct: 356 TQISECSILVEHGYQLQRMQPIDQFPHTHHLENVVLLER 394


>gi|33240415|ref|NP_875357.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|50401517|sp|Q7VBX7|Y965_PROMA RecName: Full=Uncharacterized RNA methyltransferase Pro_0965
 gi|33237942|gb|AAQ00010.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 419

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/393 (19%), Positives = 149/393 (37%), Gaps = 51/393 (12%)

Query: 2   SGTLLID---QYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH 53
            G  + +    Y  Q A K   L   +            + I  S+  HYR ++ F +++
Sbjct: 45  GGCSMQEIEPHY--QFAIKKKLLINALSRIGKLNDFPEPISITPSQFFHYRNKSTFPVYN 102

Query: 54  DG-DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLF 105
           +   +     + + + + + ID        IN  + ++   ++   +        +  L 
Sbjct: 103 ESYGNTIIGYYQRNSHKIVDIDNCPVLDHKINKALSDIRLILKDNHINADHDIRRKGGLR 162

Query: 106 QIDYLTS-QSDQAIVTLI----YHRLLDDAWRECA---IRLRDALHARKYQIQLIGRANK 157
            I   +   +++ ++T +      +LL     +       +   L+  + +         
Sbjct: 163 HISIRSGINTNEVLITFVSNFSIKKLLFPITNKLNGSESNVVGILNNIQPKPNNKIFGAT 222

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLE 215
           T+I   RDY+ ++               SF Q N       +  +            +++
Sbjct: 223 TEILTGRDYIYDKFCHMDI----LIGSTSFFQVNLVEAEKAINCIRNIISNTNKIVRIID 278

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            Y G G  S+ LA    RV+ +EI   + E A  N   N++  +        ++   +  
Sbjct: 279 AYSGIGTMSIPLASDGYRVIGIEINNEAHEIAIRNAEINNIKTITFENQDVTKYLPKILL 338

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYP-HILYISCNPDSLCRDLS 333
             +F               + +DPPR GLD + + ++ +  P HI Y+SCNP +L RDLS
Sbjct: 339 PNDF---------------LILDPPRKGLDPSLIDVITKLMPIHICYLSCNPATLARDLS 383

Query: 334 IL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++     ++I  +  FD FP T H+E  V L R
Sbjct: 384 LILREHKYSIISITAFDFFPQTTHLETLVYLKR 416


>gi|237747678|ref|ZP_04578158.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes
           OXCC13]
 gi|229379040|gb|EEO29131.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes
           OXCC13]
          Length = 464

 Score =  214 bits (546), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 140/381 (36%), Gaps = 33/381 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++   +   Q+A K   L   +        +            YR RA   + +    
Sbjct: 95  GCSMQHVEPSAQVAMKQRVLEDNLWHIGRVRPERMLRPIYGPYWGYRFRARLSVNYVPKK 154

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++Q++  + +         I+ +++ +   I    ++R ++ QI+       
Sbjct: 155 GGILVGFRERQSRYVVDMKECHVLPRHISDMLVPLRQLIESLSIMR-EVPQIEVAIGSDG 213

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173
             ++T +  R++     +   +L+      K Q  L  +   T      +++ +   L  
Sbjct: 214 DQLITALLLRIMAPLTADDESKLKRFADEYKVQWWLQTKGPDTIALFYPEKNALKYVLPE 273

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232
               + ++   N FTQ N  IN  ++   L     G    + +L+CG GNFSL +AR   
Sbjct: 274 FSVEMPFK--PNDFTQVNHHINQVLVSRALRLLDIGEDERIADLFCGLGNFSLPIARQAK 331

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E +    + A  N   N + +      S             F    +  +   +F
Sbjct: 332 EVVGIEGSDILTQRAEENAVLNGLEDKTKFACS-----------NLFEMTAENWVALGKF 380

Query: 293 KTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIE 342
             I +DPPR G       +              I+Y+SCNP +L RD  IL     + ++
Sbjct: 381 DRILIDPPRDGAAAVCQAIANLDEKHAQFKPKRIVYVSCNPSTLARDAGILVTEGGYKLD 440

Query: 343 RLALFDQFPYTRHMECGVLLV 363
              + + FP+T H+E   +  
Sbjct: 441 MAGVINMFPHTSHVESMAVFE 461


>gi|237745481|ref|ZP_04575961.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229376832|gb|EEO26923.1| 23S rRNA 5-methyluridine methyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 451

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 137/382 (35%), Gaps = 33/382 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHI--WHDG 55
             ++       Q+A K   L   +        +            YR RA   +      
Sbjct: 82  GCSMQHLDPAAQVAIKQRVLEDNLRHIGKVKAERMLRPIYGPYWGYRFRARLSVNDVPKK 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++Q++    +         I+ +++ +   I     +R ++ QI+       
Sbjct: 142 GGILVGFREKQSRYVADMTQCSVMPRHISEMLVPLRELIGSL-SIRQQVPQIEVAIGNDR 200

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
             +VT +  R++    +E   RL+        Q  L  +   T        + +  RL  
Sbjct: 201 DGLVTALLLRIMAPLTKEDENRLKRFADDHDIQWWLQSKGPDTITLFYPAGNKLKYRLPE 260

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + ++     FTQ N  IN  ++   +   +  + D + +L+CG GNFSL +ARH  
Sbjct: 261 FNVEMPFK--PGDFTQVNHHINPVLVSRAIRLLEIEKNDRIADLFCGLGNFSLPIARHAA 318

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++   E A+ +   N +           E          F       I    F
Sbjct: 319 EVVGIEGSEILTERAKESALLNGL-----------EEKTRFETRNLFEMTVKDWIGLGPF 367

Query: 293 KTIFVDPPRSGLDDATVGMVQAYP--------HILYISCNPDSLCRDLSIL--STTHTIE 342
             + +DPPR G       + +            I+Y+SCNP +L RD  IL     + + 
Sbjct: 368 DKVLIDPPRDGAAAVCQSIAELGKHQEALRPRRIVYVSCNPSTLARDAGILVTEGGYRLH 427

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
              + + FP+T H+E   +  R
Sbjct: 428 LAGVVNMFPHTSHVESMAVFER 449


>gi|300704420|ref|YP_003746023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia solanacearum
           CFBP2957]
 gi|299072084|emb|CBJ43416.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Ralstonia
           solanacearum CFBP2957]
          Length = 448

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 137/385 (35%), Gaps = 40/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   L   +         +           YR RA   + H    
Sbjct: 81  GCSMQHLDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +    ++  ++ Q++    Q  
Sbjct: 141 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQVEVAVGQDV 199

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            A+V     R+L+         LR     HA ++ +Q  G             +   L  
Sbjct: 200 TALVL----RILEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPE 255

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G T+ ++     FTQ N  IN  ++  VL       GD LL+L+CG GNF+L +A    
Sbjct: 256 FGITMPFK--PTDFTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGR 313

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++     A  N   N +           +          F    D      RF
Sbjct: 314 EVMGIEGSEALTTRALANAQHNGL-----------DAKTTFACRNLFEVSADDIAALGRF 362

Query: 293 KTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STTH 339
               VDPPR G    +  + +               I+Y+SCNP +L RD  +L     +
Sbjct: 363 DRWLVDPPREGALAVSKALAELSQSGSEAAALLPGRIVYVSCNPATLARDAGLLVHEAGY 422

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +    + + FP+T H+E   +  R
Sbjct: 423 RLSGAGVVNMFPHTSHVESIAVFDR 447


>gi|119475990|ref|ZP_01616342.1| hypothetical protein GP2143_05355 [marine gamma proteobacterium
           HTCC2143]
 gi|119450617|gb|EAW31851.1| hypothetical protein GP2143_05355 [marine gamma proteobacterium
           HTCC2143]
          Length = 458

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 139/373 (37%), Gaps = 31/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDD 57
              L    Y  Q   K DRL Q+   +   + ++       +P  YR RA F +      
Sbjct: 98  GCDLQHLDYPSQTQHKWDRLSQLFSPWLDNDDRLVMGSITGDPWSYRHRARFAVDASKHS 157

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                   ++ + + I         IN  +  +   ++     R+ + ++      S   
Sbjct: 158 CNIGFRQARSHKVVDITRCSIVFDGINDALATVRRLVKSLK-NRSVINEVSITEDSSGNI 216

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTVA 174
            + +   R L  +       + +        I++   A  T+     D    +   L   
Sbjct: 217 GIAIFCTRPLSAS---DIAAVSEHAITHDCHIEVRSSATATQCMFPEDRSVALSYTLDSY 273

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233
              + Y    + FTQ N  IN  ++   +   +  + D++ + +CG GNFSL ++    R
Sbjct: 274 DVVIPYTV--DDFTQVNPAINHRLVALTIKWLQLGEKDIVADFFCGIGNFSLPISTFVAR 331

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
            +  E     V+ AR N   NH++N +   +                   D  +    F 
Sbjct: 332 TVGFEWVASMVDKARSNAVFNHIDNCEFKVIDLT---------------ADRLVIDEDFN 376

Query: 294 TIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFP 351
              +DPPR+G +     + ++    I+YISCNP +L RD  IL+   + +  L+L D FP
Sbjct: 377 KALLDPPRAGAEKICKQLAESKLERIVYISCNPRTLARDSKILTQGNYQLTELSLADMFP 436

Query: 352 YTRHMECGVLLVR 364
            T H E   L  R
Sbjct: 437 QTVHSEVVALFTR 449


>gi|220916705|ref|YP_002492009.1| (uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954559|gb|ACL64943.1| (Uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 438

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 139/374 (37%), Gaps = 30/374 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
               L   Y  QLA K   L + +                +    P+ YR RA+FH  HD
Sbjct: 84  GCEWLHVAYPAQLAAKERSLHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HD 141

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
                 + F +++ E +R+      S  ++AL   +   +     L  +   +++  +  
Sbjct: 142 RAAGRLVFFRRRSHEPVRLRECHLLSPGLDALREAVGPALAA-ARLSPREVALEWSDAAG 200

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLT 172
             A   L     L +       R    L        L+ +A   +     D V    R  
Sbjct: 201 RGAAWLL-----LPEVTAPVRARAEALLRDVPSLQGLVLQAEGGQPVTAGDPVLRHARAP 255

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                   R   + F Q N G N  ++E  L        D+LEL+CG GNF+  L+    
Sbjct: 256 GRPEAGTQRSRPDVFQQANRGANARLVETALELLAPAGEDVLELHCGAGNFTGPLSEQAR 315

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V AVE+  P+++ AR   A     NV+     +    +A  RE            + RF
Sbjct: 316 SVSAVEVQGPALDLAR---ADLGGRNVRFFAGDALALARAFGRE--------AGPGARRF 364

Query: 293 KTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350
               +DPPR G       +     P  +Y+SC+P +  RDL + +   + +  +   D F
Sbjct: 365 GAALLDPPREGARGIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMF 424

Query: 351 PYTRHMECGVLLVR 364
           P T H+E   LL R
Sbjct: 425 PQTHHVEGVALLER 438


>gi|226954324|ref|ZP_03824788.1| 23S rRNA (uracil-5-)-methyltransferase(23S
           rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp.
           ATCC 27244]
 gi|226834902|gb|EEH67285.1| 23S rRNA (uracil-5-)-methyltransferase(23S
           rRNA(M-5-U1939)-methyltransferase) [Acinetobacter sp.
           ATCC 27244]
          Length = 463

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 153/383 (39%), Gaps = 33/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             +L     ++Q+  K + L+  +  F     +      RS  I YR RA   + +    
Sbjct: 98  GCSLQHIHPDEQILLKQNVLQSHLQHFAGLQPEQWLTPIRSSKIDYRRRARIGVRYIPRQ 157

Query: 58  LYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              +M  ++        I         ++  + E+   +      +A +  ++      +
Sbjct: 158 DRLVMGFREHHSNHLTTIHQCKVLDQTLSDAIPELRKCLEGLMA-KAHIGHVELAMGDHE 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A++     R L++        LR     R++Q+ L  R   +   +D      RL    
Sbjct: 217 VALLI----RHLEELNVSDVNHLRQFALQRQWQLYLQPRGADSLHRVDDVQAPMRLHYHL 272

Query: 176 RTL--IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
                 +      FTQ N+ +N  M++      +  +G+ +L+L+CG GNFSL LAR   
Sbjct: 273 DDFDIRFAFSPLDFTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVG 332

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ VE +   V  A  N  AN +N        S++ T+                  
Sbjct: 333 DTGQVIGVEASDEMVLRATENAKANSLNQAIFF---SQDLTKDFS---------HHPWAK 380

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLAL 346
             F  + +DPPRSG  +  +  V ++    I+Y+SCNP +L RD  +L+   + +++ A+
Sbjct: 381 QGFDALLIDPPRSGAFE-VMQYVPSFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAV 439

Query: 347 FDQFPYTRHMECGVLLVRKPSGW 369
            D F +T H+E   L  +  S  
Sbjct: 440 MDMFTHTEHVESIALFEKNESDK 462


>gi|120611974|ref|YP_971652.1| 23S rRNA 5-methyluridine methyltransferase [Acidovorax citrulli
           AAC00-1]
 gi|143580423|sp|A1TSE0|RUMA_ACIAC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120590438|gb|ABM33878.1| 23S rRNA m(5)U-1939 methyltransferase [Acidovorax citrulli AAC00-1]
          Length = 491

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 135/396 (34%), Gaps = 44/396 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              +       Q+A K   L   +        +            YR RA   + H    
Sbjct: 106 GCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVLRPIEGPAWGYRYRARLAVRHVEKK 165

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     +++++    ++        ++A+++ + A I      R    QI+       
Sbjct: 166 GKVLVGFHERKSRYIADMEVCPVLPPHVSAMLLPLRALIASMDA-RDTCPQIELACGDDV 224

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173
            A+V     R L+        RLR    A   Q  L  +   T   L      ++  L  
Sbjct: 225 TALVL----RHLEPLSEADLGRLRSFAAAHGVQWWLQPKGPDTVHLLDEGGPQLNYALPD 280

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232
            G T+ ++     FTQ N  IN  ++   L     G    +++ +CG GNF+L +A    
Sbjct: 281 FGITMPFK--PTDFTQVNPHINRVLVTRALRLLDAGRTDRVIDWFCGLGNFTLPIATQAR 338

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++  V  +R N   N  +  +   ++   F         F    ++ I     
Sbjct: 339 EVVGIEGSEALVARSRENYRKNQDDRPQGQALAPATFV----ARNLFEMTPEMLIADGVA 394

Query: 293 KTIFVDPPRSGLDDATVGMVQAY----------------------PHILYISCNPDSLCR 330
               VDPPR G       +   +                        I+Y+SCNP +L R
Sbjct: 395 DKWLVDPPREGAFALAKALADIHQARIGAEDAPALPASAEGWTPPQRIVYVSCNPATLAR 454

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  +L     +      + + FP+T H+E   +  R
Sbjct: 455 DAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 490


>gi|283851428|ref|ZP_06368709.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. FW1012B]
 gi|283573166|gb|EFC21145.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. FW1012B]
          Length = 449

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 137/382 (35%), Gaps = 45/382 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEP----IHYRMRAEFHIWHDGDDLYHIMF 63
            Y  Q   K +++ + +     +P++ +  + P      YR + EF     G     +  
Sbjct: 88  DYGAQRFWKREQVAETLARLAGLPDVPVAETVPSPKTYEYRNKMEFAFA--GKLHLGLHE 145

Query: 64  DQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDYLTS 112
            ++    + I         ++ +            +        + + R  + +    T 
Sbjct: 146 RRRPGRVLDIATCRLMPPWVSQVLAFVRDRCAATGLAAFDARSGKGVWRHLVLRQSAATG 205

Query: 113 QSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
                ++T            + +A       +   +H+ +     I +  +    L  DY
Sbjct: 206 ARLAHLITGPARGAGDAAHQIGEALLAAFPEVTGFVHSVRRAPAAIAQGERQVFALGVDY 265

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSL 225
           ++E++  +          ++F Q N      +   V AA       +  +LYCG G  +L
Sbjct: 266 LEEQVGPS----RLHVSADAFAQTNTEAAAGLYALVAAAAGSAPDGVAWDLYCGCGGITL 321

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA HF  V  +E  K +V  A  +   ++V N       +                   
Sbjct: 322 ALAPHFGTVFGLESDKRAVADAVKSAELSNVANCIFKAGDAATALS-------------- 367

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIER 343
           D+ +     + +DPPRSG     +  +   A   I+Y+SCNP +L RDL IL   + + R
Sbjct: 368 DLAATHPAVVVLDPPRSGAAPEVLSALLDAAPKKIVYVSCNPGTLARDLKILGDLYAVTR 427

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP T H+E    L R+
Sbjct: 428 VTPVDMFPQTAHIEAVAELERR 449


>gi|160872624|ref|ZP_02062756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rickettsiella grylli]
 gi|159121423|gb|EDP46761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rickettsiella grylli]
          Length = 443

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 136/375 (36%), Gaps = 30/375 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57
              L    ++ QL  K   L   +            +        YR RA   + +    
Sbjct: 85  GCNLQHLNHQAQLQHKEKILVNQLTHVAKTKPTSLLAPVMATGWGYRRRARLGVKYVAKK 144

Query: 58  L--YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   ++      +I         ++ L+I +   I+        + QI+       
Sbjct: 145 QAVLVGFREKNGHYLAQIQTCKTLDFRVDRLLIPLQQLIQSLNAFHD-IPQIEVALGDEI 203

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---VDERL- 171
             +V     R L        + L++       Q+ L     KT  C+  +    +  RL 
Sbjct: 204 LGLV----FRHLVPLNNSDVLALKNFAKKYSVQLYLQPGNEKTTHCIWPENPQLLSYRLQ 259

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARH 230
             A R+L +    + F Q NA IN  M++  +          +L+L+CG GNFSL LA  
Sbjct: 260 NKAHRSLEFFFEPHHFIQINATINQAMIQHAIELLSPHFSDRILDLFCGLGNFSLPLALR 319

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V+ +E     VE A+ N   N +NN +                   + LK++     
Sbjct: 320 CQSVVGIEGHSALVEQAKINARHNAINNTQFYTAD-----------LTGSILKEVWAQQT 368

Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
            F  I +DPPRSG  +    + +     ++YISCNP +L RD   L    + +ER  + D
Sbjct: 369 -FNKILLDPPRSGALEVIQQIARWKVEKMVYISCNPATLARDSEELIKQGYHLERAGIMD 427

Query: 349 QFPYTRHMECGVLLV 363
            FP T H E   L  
Sbjct: 428 MFPQTHHSEAICLFT 442


>gi|313200748|ref|YP_004039406.1| TrmA family RNA methyltransferase [Methylovorus sp. MP688]
 gi|312440064|gb|ADQ84170.1| RNA methyltransferase, TrmA family [Methylovorus sp. MP688]
          Length = 454

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 139/392 (35%), Gaps = 48/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
              L    +  Q+A K   L   +        +            YR +A   + H    
Sbjct: 77  GCALQHMDFSGQVAAKQRLLEGNLWHIGKVKAETMLPPIYGPAWGYRHKARLRVRHVPKK 136

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++ +     +D        ++AL++ +   I     +R +L QI+    +  
Sbjct: 137 GGVLVGFNEKASSFVAHMDSCEVLPPHVSALIVPLQHMIAQL-SVRERLPQIEVAVGEQA 195

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172
             +V     R+L+    E    L+        QI    +   T +    L+   +   L 
Sbjct: 196 TVLVL----RILEALRPEDGPILKAFADTHGVQIWTQTKGPDTVMPFYPLNGPALTYSLP 251

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
               T  ++  E  FTQ N  IN  ML   +        D + + +CG GNF+L +AR  
Sbjct: 252 EFQLTYPFKPTE--FTQVNPHINRVMLRRAMQLLGAQPQDRIADFFCGLGNFTLPIARSG 309

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             VL +E +   V  A  + + N + +            Q   RE +  ++    + S  
Sbjct: 310 ATVLGMEGSAALVARAVESASLNGLAD------------QVEYREADLFKMTPEALQSLG 357

Query: 292 -FKTIFVDPPRSGLDDATVGM----------------VQAYPHILYISCNPDSLCRDLSI 334
            F    +DPPR G  +    +                V     I+Y+SCNP +L RD  +
Sbjct: 358 YFDKWLIDPPRDGALELIKSLADVGRGEDGAMPVAPKVAGPERIVYVSCNPATLARDAGV 417

Query: 335 LS--TTHTIERLALFDQFPYTRHMECGVLLVR 364
           L     + +    + + FP+T H+E   L  +
Sbjct: 418 LVNLKGYRLLAAGVINMFPHTSHVESIALFEK 449


>gi|134094485|ref|YP_001099560.1| 23S rRNA 5-methyluridine methyltransferase [Herminiimonas
           arsenicoxydans]
 gi|133738388|emb|CAL61433.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Herminiimonas
           arsenicoxydans]
          Length = 461

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 141/385 (36%), Gaps = 33/385 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++   +   Q+A K   L   +        +            YR RA   + +    
Sbjct: 82  GCSMQHLEPTAQVAMKQRILEDNLKHIGKVKAETMLRPIHGPTWGYRYRARISVRNVPKK 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   I    ++   L QI+    Q +
Sbjct: 142 GGVLVGFHERKSSFITDMKTCEILPANVSAMLVPLRHLIGSLSIIDH-LPQIELAIGQGE 200

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERLTV 173
           Q  +T +  R++     E  ++L+      K Q  L      +  +   + + +   L  
Sbjct: 201 QDKITALVLRIMAPLSAEDDVKLKAFADEYKVQWWLQPAGPDSAYQFYPEDENLHYSLPE 260

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L        D + +L+CG GNF+L +A    
Sbjct: 261 FGIKMPFK--PTDFTQVNHQINRVLVARALRLLDAQATDRIADLFCGLGNFTLPIATQAG 318

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E +    E A  N  AN +               A      F    D  I   +F
Sbjct: 319 EVVGIEGSTTLTERALENAVANGLAG-----------KTAFYSRNLFEAKTDDFIALGKF 367

Query: 293 KTIFVDPPRSGLDDATVGMV--------QAYPHILYISCNPDSLCRDLSIL--STTHTIE 342
             + +DPPR G       +              I+Y+SCNP +L RD ++L     + ++
Sbjct: 368 DRMLIDPPRDGALAVCEALAGLNAVRPDLLPSRIVYVSCNPSTLARDAAVLVNEGPYVLK 427

Query: 343 RLALFDQFPYTRHMECGVLLVRKPS 367
              + + FP+T H+E   +   K +
Sbjct: 428 NAGVVNMFPHTSHVESMAVFELKET 452


>gi|15618794|ref|NP_225080.1| rRNA methyltransferse [Chlamydophila pneumoniae CWL029]
 gi|4377204|gb|AAD19023.1| rRNA Methyltransferse [Chlamydophila pneumoniae CWL029]
          Length = 401

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 147/396 (37%), Gaps = 44/396 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIW--HDGD 56
             +     Y   L +K + L Q+       +     I  S  +  R + EF  +  ++G+
Sbjct: 15  GCSFPQSNYSDSLKKKEELLHQLFAPLVPSDMIAPIIPCSPSLRGRNKMEFSFFQTYEGE 74

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--------RAKLFQID 108
                +   + K+ + +   +        ++          P L        +  L  + 
Sbjct: 75  KSLGFISSTKPKKGIPVTTCLLIHEQTMDILKLTREWWDKHPELMAYFPPKNKGSLCTLT 134

Query: 109 YLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--------- 157
             T    Q   ++              C    ++ L +    I  I    K         
Sbjct: 135 VRTGSPQQNFMVILTTSGTPEYRVNEACIDEWKEILLSSSLNIASIYWEEKVAARGISTY 194

Query: 158 --TKICLDRDYVDERLTVAG--RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
             TK+      + ++L++     +  +     SF QP       ++E           + 
Sbjct: 195 YETKLLYGAPSIQQKLSLPSDGNSASFSLRPRSFFQPQITQAAKIIETAKEFINPEGSET 254

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   ++L+ +   V+ VEI   +V +A+ NI AN+  +   V +   E  +A
Sbjct: 255 LLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEVYL---EDAKA 311

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS-LC 329
             +  E  +  D          I +DPPR G+    +  +     P I+YISCNP +   
Sbjct: 312 FCKRNENCKAPD---------VIIIDPPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQ 362

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
               ++S  + I+++   DQFPY+ H+E  +LL R+
Sbjct: 363 ECADLISGGYRIKKMQPIDQFPYSTHLENIILLERE 398


>gi|15836418|ref|NP_300942.1| rRNA methyltransferse [Chlamydophila pneumoniae J138]
 gi|16752151|ref|NP_445518.1| RNA methyltransferase [Chlamydophila pneumoniae AR39]
 gi|33242245|ref|NP_877186.1| protein Hom1 [Chlamydophila pneumoniae TW-183]
 gi|12644494|sp|Q9Z721|Y885_CHLPN RecName: Full=Uncharacterized RNA methyltransferase
           CPn_0885/CP_0981/CPj0885/CpB0914
 gi|8163534|gb|AAF73721.1| RNA methyltransferase, TrmA family [Chlamydophila pneumoniae AR39]
 gi|8979259|dbj|BAA99093.1| rRNA methyltransferse [Chlamydophila pneumoniae J138]
 gi|33236756|gb|AAP98843.1| protein Hom1 [Chlamydophila pneumoniae TW-183]
          Length = 401

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 147/396 (37%), Gaps = 44/396 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIW--HDGD 56
             +     Y   L +K + L Q+       +     I  S  +  R + EF  +  ++G+
Sbjct: 15  GCSFPQSNYSDSLKKKEELLHQLFAPLVPSDMIAPIIPCSPSLRGRNKMEFSFFQTYEGE 74

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--------RAKLFQID 108
                +   + K+ + +   +        ++          P L        +  L  + 
Sbjct: 75  KSLGFISSTKPKKGIPVTTCLLIHEQTMDILKLTREWWDKHPELMAYFPPKNKGSLCTLT 134

Query: 109 YLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--------- 157
             T    Q   ++              C    ++ L +    I  I    K         
Sbjct: 135 VRTGSPQQNFMVILTTSGTPEYRVNEACIDEWKEILLSSSLNIASIYWEEKVAARGISTY 194

Query: 158 --TKICLDRDYVDERLTVAG--RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
             TK+      + ++L++     +  +     SF QP       ++E           + 
Sbjct: 195 YETKLLYGAPSIQQKLSLPSDGNSASFSLRPRSFFQPQITQAAKIIETAKEFINPEGSET 254

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   ++L+ +   V+ VEI   +V +A+ NI AN+  +   V +   E  +A
Sbjct: 255 LLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEVYL---EDAKA 311

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS-LC 329
             +  E  +  D          I +DPPR G+    +  +     P I+YISCNP +   
Sbjct: 312 FCKRNENCKAPD---------VIIIDPPRCGMQSKVLKYILRIGSPKIVYISCNPKTQFQ 362

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
               ++S  + I+++   DQFPY+ H+E  +LL R+
Sbjct: 363 ECADLISGGYRIKKMQPIDQFPYSTHLENIILLERE 398


>gi|207723158|ref|YP_002253557.1| rna methyltransferase protein [Ralstonia solanacearum MolK2]
 gi|206588352|emb|CAQ35315.1| rna methyltransferase protein [Ralstonia solanacearum MolK2]
          Length = 482

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 137/385 (35%), Gaps = 40/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   L   +         +           YR RA   + H    
Sbjct: 115 GCSMQHLDSRAQLAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 174

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +    ++  ++ Q++    Q  
Sbjct: 175 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQVEVAVGQDV 233

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            A+V     R+L+         LR     HA ++ +Q  G             +   L  
Sbjct: 234 TALVL----RILEPLTPADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPE 289

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G T+ ++     FTQ N  IN  ++  VL       GD LL+L+CG GNF+L +A    
Sbjct: 290 FGITMPFK--PTDFTQVNHQINRVLMSRVLKLLDARPGDRLLDLFCGIGNFTLPMATRGR 347

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++     A  N   N +           +          F    D      RF
Sbjct: 348 EVMGIEGSETLTTRALANAQHNGL-----------DAKTTFACRNLFEVSADDIAALGRF 396

Query: 293 KTIFVDPPRSGLDDATVGMVQ-----------AYPHILYISCNPDSLCRDLSIL--STTH 339
               VDPPR G    +  + +               I+Y+SCNP +L RD  +L     +
Sbjct: 397 DRWLVDPPREGALAVSKALAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGY 456

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +    + + FP+T H+E   +  R
Sbjct: 457 RLSGAGVVNMFPHTSHVESIAVFDR 481


>gi|78184707|ref|YP_377142.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. CC9902]
 gi|78169001|gb|ABB26098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CC9902]
          Length = 469

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 145/396 (36%), Gaps = 48/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGD 56
             TL       Q + KV  L+Q M      +          S  + YR RA   +  +GD
Sbjct: 90  GCTLQSLNESAQNSWKVSSLQQTMQRIGGIDDTPLPLLADESRGLGYRNRALIPLNREGD 149

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR------LEPLLRAK-LFQID 108
                  +  ++   + +++       ++ L+  +   +          L+ AK L  + 
Sbjct: 150 GRLRAGYYRPRSHRIVNLNHCPVLDPRLDQLIEPIKQDLDSTGWAADHDLIHAKGLRHLG 209

Query: 109 YLTSQ-SDQAIVTLIYHR-------LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
                 S + ++TLI           L + W +    ++      + +   +    +T +
Sbjct: 210 LRLGHHSGEVLITLISSHDRYPGLLELAEEWMDRWHMVKGVCLNLQPKPNNLVLGAQTFL 269

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI--QGDLLELYC 218
               D + E        +  +    +F Q N      ++  +    K    +G +++ YC
Sbjct: 270 VAGSDTIAEEFC----GIHLQLSSTTFFQINTPQAERIVHVLCDWLKTELGEGTVVDAYC 325

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRRER 277
           G G  SL LA     V+ +E+ + SV+ A  N   N++    +       +  ++     
Sbjct: 326 GIGTISLPLAAQGFEVIGLELHQGSVDQALLNAMRNNLSKGCRFRAGDVVDLLES----- 380

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL 335
                       +    + +DPPR GLD   +  +   P   + Y+SC+P +  RDL +L
Sbjct: 381 ----------ALFGADALVLDPPRRGLDARVIQTILDNPPKRLAYLSCDPATQARDLKLL 430

Query: 336 ---STTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
              +  + +++    D FP T H+E   LL R  S 
Sbjct: 431 MQPAGPYRLKKHQPIDFFPQTTHLESLALLERVNSE 466


>gi|300742321|ref|ZP_07072342.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa
           M567]
 gi|300381506|gb|EFJ78068.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa
           M567]
          Length = 376

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 147/383 (38%), Gaps = 40/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S T +   Y  QLA K    R+++ A+  +  L+   S+  H+R +A+        +   
Sbjct: 13  SCTNIETPYPAQLAAKQADARRLLAAYPHLTWLEPVASDEAHFRNKAKLVAGGSAQNPSL 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYLTSQ 113
            + D ++     +         I   +  +   I+         P  R +L  I    S+
Sbjct: 73  GIVDYRSGRATDLSECPLYIEPIERAIPVLHELIQRADLTPYDIPARRGELKNILVTASE 132

Query: 114 SDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
           + + +V  +   + L    R     L++ L   K  +  +    +    ++ D  +E + 
Sbjct: 133 TGELMVRFVLRSKKLLVPIRRQLGWLQERLP--KLAVLSVNLLREHVALIEGD--EEIIL 188

Query: 173 VAGRTLIYRQ-------IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
              +TL  R           SF Q N  I   M E        +Q   L +LYCG G F+
Sbjct: 189 TERQTLPMRVNGMSLHLRPQSFFQTNTQIAQAMYEQGREWVSQVQPRTLWDLYCGVGGFA 248

Query: 225 LVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           L  A+     V  +EI+  ++ +A+  +A   +  VK     + EF    R   E     
Sbjct: 249 LHAAQVMHGEVTGIEISVEAIRSAQRTVAEQGLKGVKFAAGDATEFAVNARETPEM---- 304

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                      + V+PPR G+ +     V+     H++Y SCN  +L  DL+ + + +  
Sbjct: 305 -----------LVVNPPRRGIGERLCAWVEGSGIEHVIYSSCNAKTLAADLARMPS-YRP 352

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + D FP+T H E   LL R
Sbjct: 353 IAARVLDMFPHTNHYEVMTLLKR 375


>gi|194476527|ref|YP_002048706.1| 23S rRNA methyltransferase/RumA [Paulinella chromatophora]
 gi|171191534|gb|ACB42496.1| 23S rRNA methyltransferase/RumA [Paulinella chromatophora]
          Length = 448

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 147/385 (38%), Gaps = 42/385 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
             +L     + Q+A K   + + +       +++      +EPI YR +A   +      
Sbjct: 81  GCSLQSINEQAQVAWKQHYVSETLNRLSGIEVKVLPLLITNEPIKYRNKALIPLEQTSSG 140

Query: 58  -LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE--PLLRAKLFQIDYLT--- 111
            L    + + + + + +D        I+ L+  + A +     P+    L  I +L    
Sbjct: 141 WLRAGFYRRASHQIVNMDNCPLLDPRIDTLVEPIKADLETSHWPIDIHSLNGIRHLCLKV 200

Query: 112 -SQSDQAIVTLIYH-------RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
              +++ I+TL+           L   W +   ++       +  +  +   + TK    
Sbjct: 201 GILTNEIIITLVSSHDRMPGISKLAQHWMQRWPQVVGVCLNLQPNLDNVAIGSSTKTIAG 260

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222
           R ++ ER       L  R   ++F Q N       + ++ +      G  +L+ Y G G 
Sbjct: 261 RPWLIERFC----NLNLRIASDTFFQINTLQAERAVNFLASILNVSTGPKILDAYSGVGT 316

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL LA     VL +E+   SV  AR N   N + + +   +   E              
Sbjct: 317 LSLPLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAEALA----------- 365

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSI--LSTT 338
               +H      + VDPPR GL+   +  + A P    +Y+SCNP +L RDL +  L+  
Sbjct: 366 ----LHLPSSDALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLARDLRLLTLAGN 421

Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363
             +  +   D FP T H+EC  +L 
Sbjct: 422 IKVTFIQPIDFFPKTTHVECLTILE 446


>gi|195591421|ref|XP_002085439.1| GD12311 [Drosophila simulans]
 gi|194197448|gb|EDX11024.1| GD12311 [Drosophila simulans]
          Length = 605

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 153/422 (36%), Gaps = 64/422 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNLQIFR-----SEPI--HYRM 45
             L    Y+QQL +K + +  ++  +            P+L  F+       P    YR 
Sbjct: 165 CPLSHIAYDQQLKQKSEEMSALLAKYTQELRRVNPRAKPHLDKFQFHGVLPSPTVNGYRN 224

Query: 46  RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97
           + EF +  +             +   + E   +    +    +        +++   +  
Sbjct: 225 KNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 284

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARK-- 146
           P          R  + +    T +    +V  IY   L +D   E    L+         
Sbjct: 285 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQVELKQELKSFYEELGKD 342

Query: 147 ---------YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                    YQ      A +T   ++       +T   + L +R    +F Q N      
Sbjct: 343 APYKCTSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 402

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +      +   +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN +
Sbjct: 403 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 462

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313
            N K    ++ +F ++M RE  +++     +         VDPPR+GL   ++  ++   
Sbjct: 463 KNAKFFTGNADDFIKSMVREALYDQEPVKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 518

Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           A   ++Y+SCNP S  R+   L               +     D FP+T H E  +L  R
Sbjct: 519 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578

Query: 365 KP 366
           +P
Sbjct: 579 EP 580


>gi|123441098|ref|YP_001005087.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|226725400|sp|A1JJR0|RUMA_YERE8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|122088059|emb|CAL10847.1| 23s rRNA (uracil-5-)-methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|330859216|emb|CBX69567.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia
           enterocolitica W22703]
          Length = 443

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 145/365 (39%), Gaps = 32/365 (8%)

Query: 12  QQLAE--KVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            QL +  K D L+++++       Q   +       YR RA   + +        M  +Q
Sbjct: 97  SQLQQMSKADSLQRLIMREAGACPQLDPVICGSEYGYRRRARLGLLYQPKQHRLQMGFRQ 156

Query: 67  T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           T   + + I +       +  L++ +   +     +R +L  ++ + + +   +V     
Sbjct: 157 TESHDLVCIKHCPVLRPELERLLLPLYQCLSGLQAVR-RLGHVELVLADNGPLMVL---- 211

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD         L D     +  + L G ++  +  +      E        L      
Sbjct: 212 RHLDTLKEVDRAALIDFAKREQVAVYLAGDSDNVEKLIG-----EEPYYQIEGLRLAFHP 266

Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   +A         +L+L+CG GNF+L LA+    V+ VE     
Sbjct: 267 RDFIQVNDTVNQQMVAQAIAWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAAL 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   +YN   N + NV     + +            + +      +  F  + +DP R+G
Sbjct: 327 VANGQYNALNNALPNVSFFHENLE------------SDISRQPWATQGFDKVLLDPARAG 374

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
                  +V+  P  ++Y+SCNP +L RD   +L+  + + ++ + D FP+T H+E   L
Sbjct: 375 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 434

Query: 362 LVRKP 366
            +++P
Sbjct: 435 FMQEP 439


>gi|113868344|ref|YP_726833.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia eutropha H16]
 gi|122946761|sp|Q0K956|RUMA_CUPNH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|113527120|emb|CAJ93465.1| tRNA (Uracil-5-)-methyltransferase [Ralstonia eutropha H16]
          Length = 441

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 131/380 (34%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   L   +         +           YR RA   + H    
Sbjct: 77  GCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIAGPDWGYRYRARLTVRHVAKK 136

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+    Q  
Sbjct: 137 GGVLVGFHERKSSYVADMTRCEILPPHVSAMLVPLRELVGGL-SIRDRMPQIELAVGQEV 195

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R+L+         LR      K Q  L  +   T         +   T+  
Sbjct: 196 TALVL----RILEPLTDADKDLLRAFADQHKVQFWLQPKGPDTVYPFYPADAELAYTLPE 251

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L        D LL+L+CG GNF+L LA     V
Sbjct: 252 FGIRMPFKPTDFTQVNHQINRVLIGRALRLLDAQPQDRLLDLFCGIGNFTLPLATQGKSV 311

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N +        +  EF         F    +      RF  
Sbjct: 312 MGIEGSEALTTRALANAEYNGL-------AARTEFAC----RNLFEVTAEDIAALGRFDR 360

Query: 295 IFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             VDPPR G       + +            I+Y+SC+P +L RD  +L     + +   
Sbjct: 361 WLVDPPREGALAVCKALGELAQQGSNVLPQRIVYVSCSPATLARDAGLLVHGAGYRLAGA 420

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP+T H+E   +  R
Sbjct: 421 GVVNMFPHTSHVESIAVFER 440


>gi|229825365|ref|ZP_04451434.1| hypothetical protein GCWU000182_00719 [Abiotrophia defectiva ATCC
           49176]
 gi|229790737|gb|EEP26851.1| hypothetical protein GCWU000182_00719 [Abiotrophia defectiva ATCC
           49176]
          Length = 514

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 143/426 (33%), Gaps = 82/426 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAE--FHIWHDG 55
             +     YE+QL  K  ++++M+      + +    +        R + E  F   + G
Sbjct: 82  GCSYHTLPYEEQLKLKSTQVKKMLDRVITTDYEYEEILGSPNEWETRNKMEYAFGDSYKG 141

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
             +   +  +    + +  D     +              N   I           LR  
Sbjct: 142 GPMSLGLHKRGHFHDILYTDDCKIVNDDFNKVLRCVFEHFNEAEISFYNKAMHRGYLRHL 201

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL--------------------- 142
           L +    T +   A+ T        +        L++ L                     
Sbjct: 202 LVRRAAKTGEILVALETSSDFITKSEKNAMEMDSLKEFLASSNAVYDKDKEQSQAEKNIL 261

Query: 143 --------------------HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                               H    ++    +A + +I   RDY++E L      L ++ 
Sbjct: 262 AKMVEKLRKVSLEGEIVGIIHLINNEVSDDVKAERQEILFGRDYINEELL----GLKFKI 317

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAK 241
              SF Q N+     +   V       +G+++ +LY G G    +++    +V+ +EI +
Sbjct: 318 TTFSFFQTNSLGAEVLYSKVREYVGNNEGNVVYDLYSGTGTIGQIISPVAKKVIGIEIVE 377

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V AA  N   N + N + +     +                 D    +   I +DPPR
Sbjct: 378 EAVIAANENAKLNGLTNTEFLAGDVFKVL---------------DEVKEKPDFIILDPPR 422

Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            G+    +  V +Y    I+YI+C P SL RD+       + ++++ L D FP T H+E 
Sbjct: 423 DGVSPKALKRVLSYGVRDIVYIACKPTSLVRDIPEFEAVGYRVKKVCLCDMFPETLHVET 482

Query: 359 GVLLVR 364
             LL +
Sbjct: 483 VCLLSK 488


>gi|326316746|ref|YP_004234418.1| TrmA family RNA methyltransferase [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373582|gb|ADX45851.1| RNA methyltransferase, TrmA family [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 490

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 135/396 (34%), Gaps = 44/396 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55
              +       Q+A K   L   +        +            YR RA   + H    
Sbjct: 105 GCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVMRPIEGPAWGYRYRARLAVRHVAKK 164

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     +++++    ++        ++AL++ M A I      R    QI+       
Sbjct: 165 GKVLVGFHERKSRYIADMEVCPVLPPHVSALLMPMRALIASMDA-RDTCPQIELACGDDV 223

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTV 173
            A+V     R L+        RLR    A   Q  L  +   T   L      ++  L  
Sbjct: 224 TALVL----RHLEPLSEADLDRLRAFAAAHGVQWWLQPKGPDTVHLLEEGGPQLNYALPD 279

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232
            G T+ ++     FTQ N  IN  ++   L     G    +++ +CG GNF+L +A    
Sbjct: 280 FGITMPFK--PTDFTQVNPHINRVLVTRALRLLDAGRADRVIDWFCGLGNFTLPIATQAR 337

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++  V  +R N   N  +  +   ++   F         F    ++ I     
Sbjct: 338 EVVGIEGSEALVARSRENYRKNQDDRPQGQALAPTTFV----ARNLFEMTPEMLIADGVA 393

Query: 293 KTIFVDPPRSGLDDATVGMVQAY----------------------PHILYISCNPDSLCR 330
               VDPPR G       +   +                        I+Y+SCNP +L R
Sbjct: 394 DKWLVDPPREGAFALAKALADIHQARIGTEDAPALPASAEGWTPPQRIVYVSCNPATLAR 453

Query: 331 DLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  +L     +      + + FP+T H+E   +  R
Sbjct: 454 DAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 489


>gi|153001658|ref|YP_001367339.1| 23S rRNA 5-methyluridine methyltransferase [Shewanella baltica
           OS185]
 gi|226725387|sp|A6WR37|RUMA_SHEB8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|151366276|gb|ABS09276.1| RNA methyltransferase, TrmA family [Shewanella baltica OS185]
          Length = 450

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 137/374 (36%), Gaps = 29/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDD 57
              L       Q   K   L  +M  F              E  HYR RA      D + 
Sbjct: 91  GCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGTLSPALTGEGWHYRRRARLATLFDKNT 150

Query: 58  LYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +         +   + I      +  ++ L++   A +  +   +A L  ++ + + + 
Sbjct: 151 KHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVP-FAKLLNQLSAKASLGHLELIAADNG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL-IGRANKTKICLDRDYVDERLTVA 174
              V  I   L D    + +      L     Q      +    ++ L    V + L   
Sbjct: 210 HFAVLRITKALNDKDLAKLSAFAEQHLIHICLQDNEGQFQGVGAELVL---PVYQLLGDK 266

Query: 175 GRT--LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
             +  +       +F Q N  IN  M+   L        + +L+L+CG GNFSL LA+  
Sbjct: 267 AESDAVSLSFTPGNFVQVNGQINKAMVAQALDWLAPAPDERILDLFCGMGNFSLPLAKMG 326

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE     V  AR N  AN+++ +          +  +  E    ++         
Sbjct: 327 ADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGD---LSADLSLEPWMGKI--------- 374

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349
              + +DP R+G  ++   + +  P  ++Y+SCNP SL RD   +L   + +++L L D 
Sbjct: 375 -DKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDM 433

Query: 350 FPYTRHMECGVLLV 363
           FP T H+E   L  
Sbjct: 434 FPQTHHIEAMALFE 447


>gi|311112240|ref|YP_003983462.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa
           ATCC 17931]
 gi|310943734|gb|ADP40028.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rothia dentocariosa
           ATCC 17931]
          Length = 376

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 146/383 (38%), Gaps = 40/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S T +   Y  Q+A K    R+++ A+  +  L+   S+  H+R +A+  +     +   
Sbjct: 13  SCTSIETPYPAQIAAKQADARRLLAAYPHLTWLEPVASDEAHFRNKAKLVVGGSAQNPSL 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYLTSQ 113
            + D ++     +         I   +  +   I+         P  R +L  I    S 
Sbjct: 73  GIVDYRSGRATDLSECPLYIEPIERAIPVLHELIQRADLTPYDIPARRGELKNILVTASD 132

Query: 114 SDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
           + + +V  +   + L    R     L++ L   K  +  +    +    ++ D  +E + 
Sbjct: 133 TGELMVRFVLRSKKLLVPIRRQLGWLQERLP--KLAVLSVNLLREHVALIEGD--EEIIL 188

Query: 173 VAGRTLIYRQ-------IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
              +TL  R           SF Q N  I   M          +Q   L +LYCG G F+
Sbjct: 189 TDRQTLPMRVNGMSLHLRPQSFFQTNTQIAQAMYAQGREWVAQVQPRTLWDLYCGVGGFA 248

Query: 225 LVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           L  A+     V  +EI+  ++ +A+  +A   +  VK     + EF    R   E     
Sbjct: 249 LHAAQVMHGEVTGIEISAEAIRSAQRTVAEQGLEGVKFAAGDATEFAVNARETPEM---- 304

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                      + V+PPR G+ +     V+     H++Y SCN  +L  DL+ + + +  
Sbjct: 305 -----------LVVNPPRRGIGERLCAWVEGSEIEHVIYSSCNAKTLASDLARMPS-YKP 352

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + D FP+T H E   LL R
Sbjct: 353 VAARVLDMFPHTNHYEVMTLLRR 375


>gi|24212992|ref|NP_710473.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45656154|ref|YP_000240.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|50401584|sp|Q8F9A3|Y292_LEPIN RecName: Full=Uncharacterized RNA methyltransferase LA_0292
 gi|51316691|sp|Q72VP7|Y249_LEPIC RecName: Full=Uncharacterized RNA methyltransferase LIC_10249
 gi|24193673|gb|AAN47491.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45599387|gb|AAS68877.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 393

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 145/396 (36%), Gaps = 52/396 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSE-PIHYRMRAEFHIWH----DG 55
               L   YE+QL  K + + +    F+   + QI +S     YR + +    H      
Sbjct: 17  GCDRLHIGYEKQLQHKQEEIEKRFKGFKGLEIRQIIKSPKDQMYRHKVQLPFGHRKIGKK 76

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104
             L   + +++    +           +  +   +    R E            LLR  +
Sbjct: 77  SVLTLGLHNKENTFIIDQKECRIQDEDLTTVAAAIRHWARNENLEPYHEKKGSGLLRHIV 136

Query: 105 FQIDYLTSQSDQAIVTLIYH----RLLDD---------AWRECAIR-LRDALHARKYQIQ 150
            +    T +    IVT        + L D          ++E +   +   L     +  
Sbjct: 137 LRKANATQEILVGIVTNESEIPGRKKLTDRLYSYIQQFLYKENSKADVVGILQNVNRKNT 196

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
            +    K      R +V E++      L ++   ++F Q N     ++   +L       
Sbjct: 197 KVVLGEKEVTWYGRHFVKEKIG----KLDFQIGLSTFFQVNPFQIENLYNLILE-DLPEN 251

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +++ YCG G  SL +A    +V+ +E    S+ +A     AN + NV  ++    +  
Sbjct: 252 KCVVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKGKVLDTL 311

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           +A   E                  + +DPPR GLD  T  ++       ILY+SCNP++L
Sbjct: 312 RAALNE--------------NSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETL 357

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD   L+ +   E++   D FP+T H+E   +  +
Sbjct: 358 LRDAIELTKSFKYEKITPVDLFPHTSHLESVSVFTK 393


>gi|269302671|gb|ACZ32771.1| RNA methyltransferase family protein [Chlamydophila pneumoniae
           LPCoLN]
          Length = 401

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 146/396 (36%), Gaps = 44/396 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIW--HDGD 56
             +     Y   L +K + L Q+       +     I  S  +  R + EF  +  ++G+
Sbjct: 15  GCSFPQSNYSDSLKKKEELLHQLFAPLVPSDMIAPIIPCSPSLRGRNKMEFSFFQTYEGE 74

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--------RAKLFQID 108
                +   + K+ + +   +        ++          P L        +  L  + 
Sbjct: 75  KSLGFISSTKPKKGIPVTTCLLIHEQTMDILKLTREWWDKHPELMAYFPPKNKGSLCTLT 134

Query: 109 YLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--------- 157
             T    Q   ++              C    ++ L +    I  I    K         
Sbjct: 135 VRTGSPQQNFMVILTTSGTPEYRVNEACIDEWKEILLSSSLNIASIYWEEKVAARGISTY 194

Query: 158 --TKICLDRDYVDERLTVAGRT--LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
             TK+      + ++L++        +     SF QP       ++E           + 
Sbjct: 195 YETKLLYGAPSIQQKLSLPSDDNSASFSLRPRSFFQPQITQAAKIIETAKEFINPEGSET 254

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   ++L+ +   V+ VEI   +V +A+ NI AN+  +   V +   E  +A
Sbjct: 255 LLDLYCGAGTIGIMLSPYVKNVIGVEIIPDAVASAQENIKANNKEDCVEVYL---EDAKA 311

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS-LC 329
             +  E  +  D          I +DPPR G+    +  +     P I+YISCNP +   
Sbjct: 312 FCKRNENCKAPD---------VIVIDPPRCGMQSKVLKYILRIESPKIVYISCNPKTQFQ 362

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
               ++S  + I+++   DQFPY+ H+E  +LL R+
Sbjct: 363 ECADLISGGYRIKKMQPIDQFPYSTHLENIILLERE 398


>gi|331005378|ref|ZP_08328762.1| RNA methyltransferase, TrmA family [gamma proteobacterium IMCC1989]
 gi|330420832|gb|EGG95114.1| RNA methyltransferase, TrmA family [gamma proteobacterium IMCC1989]
          Length = 493

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 154/402 (38%), Gaps = 48/402 (11%)

Query: 9   QY---EQQLAEKVDRLRQMMLAFQ--VPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           QY   E+Q+A K D +   +  +    P+  L +       YR R    + +       +
Sbjct: 53  QYMSAEEQVAFKQDAVLSQLSRWSQITPDTLLPVLTDTEYGYRQRVRLAVDYTKTGELLL 112

Query: 62  MFDQ-QTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDY----LTSQ 113
            F +  ++  + ID  M  +  +  L+    + ++ I+   +   +L    +     +  
Sbjct: 113 GFREVDSRAIVNIDSCMVLNPNLQKLIHPLRQWLSYIKAHVVSHVELVNTTHSAAPASGD 172

Query: 114 SDQAIVTLIYH-RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---- 168
             +A+  ++ H RLL  A R    +           + L  ++ K  +  D + ++    
Sbjct: 173 GTEAVGIVVRHTRLLASADRLQLQQCMSTFKKAGLTVNLWFQSQKKGVLEDSNNIEVDPR 232

Query: 169 -ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
            E +      L++R     F Q N  IN  M+E  +A       + +++LYCG GNFSL 
Sbjct: 233 LEYVLPLASPLLFRFHPQDFIQSNPSINQKMVEQAIALLAPQSHEIVMDLYCGIGNFSLP 292

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--------------------- 265
           LA H   VLAVE  +     A  N   N +NNV  +                        
Sbjct: 293 LALHAKHVLAVEGVEAMTIRAADNAHCNGINNVTFITQDLSQPKLLRASVSAYCQKQDAF 352

Query: 266 ---SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYI 321
              ++  TQ++    + +              + +DPPR+G       + +  P  I+Y+
Sbjct: 353 QSAAQPITQSITSTAQVDSSTKKPAKQGVIDALLLDPPRAGAKTICENIAELLPQRIVYV 412

Query: 322 SCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
           SC+  +  RD  +L    + +  L + D FP T H+E     
Sbjct: 413 SCDSSTFARDAGLLVDNGYRLSTLGIMDMFPQTSHVEIMASF 454


>gi|152977878|ref|YP_001343507.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           succinogenes 130Z]
 gi|150839601|gb|ABR73572.1| RNA methyltransferase, TrmA family [Actinobacillus succinogenes
           130Z]
          Length = 439

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/360 (23%), Positives = 143/360 (39%), Gaps = 32/360 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDDLYHIMF--DQQT 67
           Q   K   L Q +   Q  +++       EP  YR RA   +  DG      M    + +
Sbjct: 104 QRNAKQQALFQRLQKLQ-KDIEFMPMMTGEPWQYRRRARLSLLFDGKTRQLEMGFRGKGS 162

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + +D        +N L+  + A +       A L  ++ + + +  A++  +   L+
Sbjct: 163 AQIVAVDRCEVLEPALNNLLPNLTA-LFARFSQPASLGHVELVAADNGVAVLLRVTQNLV 221

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           +         L     A  Y + L  + N++   L  +     +    + L  +     F
Sbjct: 222 ES----DRTLLLGF--AESYGVNLFVQDNQSIRLLHGEPPYYEI----QGLRLQFDIRDF 271

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q NA +N  M+            D +L+L+CG GNF+L ++R     + +E     V  
Sbjct: 272 IQVNADLNRKMVATASDWLALKPTDRVLDLFCGMGNFTLPISRLVKSAVGIEGVSAMVTK 331

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N   NH  NV+  +                +   D    +  F  I +DPPRSG   
Sbjct: 332 ATKNAEQNHCENVEFYQTDLD------------SSFVDKPWANRPFDKILLDPPRSGAAF 379

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           A   ++   P  ILY+SCNP +L RD   +L   + + R+A+ D FP+T H+E   L  +
Sbjct: 380 ALSALIGLQPEKILYVSCNPATLIRDAENLLRAGYRLRRVAMIDMFPHTGHLESISLFEK 439


>gi|195377591|ref|XP_002047572.1| GJ13518 [Drosophila virilis]
 gi|194154730|gb|EDW69914.1| GJ13518 [Drosophila virilis]
          Length = 603

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 155/419 (36%), Gaps = 60/419 (14%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNLQIFR-----SEPI--HYRM 45
             L    YE+QL +K + +  ++  +            P+L  F+       P    YR 
Sbjct: 159 CPLAEMPYEKQLEQKTEEMATLLRKYTQELRRLNADAKPHLDKFQFKGVLPSPTVDGYRN 218

Query: 46  RAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMIEMMATIRLE 97
           + EF +  + D    + F   +         E  ++ +    +        +++   + +
Sbjct: 219 KNEFTVGKNSDGEIVVGFRLGSYSDGSVEVAEVQQLPHLPAQAKWAAQSFQQLVRQSKFQ 278

Query: 98  PLL------RAKLFQIDYLTSQSDQAIVTLIYHRLLDD-AWRECAIRLRDALHARK---- 146
           P          +   +   T+  +  +V  IY   L +   +E    LR      +    
Sbjct: 279 PFNPVGNVGHFRQLMVRSSTATGELMLVAGIYSSNLSETEQQELQTELRTFYEQPEQNNT 338

Query: 147 -------YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
                  YQ      A +    +        +T   + L +R    +F Q N      + 
Sbjct: 339 HKCTSLYYQDVKHREAGQMVNPVTHLSGSTHITDTIQGLQFRVSPLAFFQINTAGANVLY 398

Query: 200 EWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +  +  A       +L++ CG G  +L  A+H  +VL VEI   +++ A YN   N + N
Sbjct: 399 QQAIDLAAPSRDTTMLDICCGTGTIALAFAKHCKQVLGVEIVPDAIKDAEYNAQENDIKN 458

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AY 315
            K    ++ +F ++M RE  + +     +         VDPPR+GL + ++  ++   A 
Sbjct: 459 CKFFAGNADDFIKSMVREALYGQEPGKPVDL----IAVVDPPRAGLHNRSIAAIRSASAI 514

Query: 316 PHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             ++Y+SCNP+S  R+   L               +     D FP+T H E  +L  R+
Sbjct: 515 NRLVYVSCNPNSAKRNFIELARPESKQYKGEPFYPKTAVAVDMFPHTTHTELVILFERE 573


>gi|269925291|ref|YP_003321914.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269788951|gb|ACZ41092.1| RNA methyltransferase, TrmA family [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 405

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 137/373 (36%), Gaps = 75/373 (20%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG 55
            G      +Y++QL  K   +  ++              I      +YR  A F     G
Sbjct: 95  GGCHYQHIRYDRQLEIKRHIVESLLSRIGGFRDIKVLPTIPSPREYYYRNSARFLCGQQG 154

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       D ++   +++D        IN ++  +         +R +       + Q D
Sbjct: 155 DL---GFTDWRSNSFIKVDTCPIMDEKINEVLQHIQGHGLPGENVRVR------YSRQKD 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           + ++           W + ++ L                   T++ L R+          
Sbjct: 206 ELVI-----------WPKLSVDLETGQQFH------------TQVLLGRE---------- 232

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
               +R    SF Q N     +++   L   + ++G  +++ YCG G F+  +A   +  
Sbjct: 233 ----FRVSATSFFQVNTLQAENLIRIALDELEPLEGKTVVDAYCGVGTFTRFIAERAELT 288

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E +  +    RYN+       ++             R E+E  RL +          
Sbjct: 289 IGIEESPSATADFRYNMQGLKAKLIE------------GRAEKELGRLPN------NIDR 330

Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQF 350
           + +DPPR+G +   +  +   A   I+Y+SC+P +L RDL +L +T  + ++++   D F
Sbjct: 331 LLLDPPRTGCEPEALETILELAPEKIVYVSCDPATLARDLKVLCSTGAYRLKKVQPVDMF 390

Query: 351 PYTRHMECGVLLV 363
           P T H+E    L 
Sbjct: 391 PQTFHIETIASLE 403


>gi|227874094|ref|ZP_03992301.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268]
 gi|227840071|gb|EEJ50494.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268]
          Length = 400

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 133/382 (34%), Gaps = 68/382 (17%)

Query: 45  MRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGS---LLINALMIEMMATIRL----- 96
            + E        DL    +   +   +     +  S    LI   + E     ++     
Sbjct: 28  NKIE--AKEKSSDLSMGFYGFHSHRIIETKDCLINSAENPLILNCIKEWAREYKISGYEE 85

Query: 97  ---EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQ-- 150
              + LLR    +  + T    + ++ L+ +       +E    L+  L  A +  +Q  
Sbjct: 86  ETGKGLLRHIFLRKGFSTG---EILLCLVLNGKSLPHGKELWENLQGLLLSAEEGDLQRE 142

Query: 151 ---------------------------------------LIGRANKTKICLDRDYVDERL 171
                                                        +T     +D +++++
Sbjct: 143 EDVSCGMDAQSQEDVYCGKNGTVQGSIVGLCVNINEGSGNAILGRETLCLYGKDSIEDKI 202

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH 230
                 L +     SF Q N      +    L  A    +  + + YCG G  SL LA+ 
Sbjct: 203 G----ELSFSISVPSFYQVNPVQTEKIYGKALEYAALTGEETVWDCYCGIGTISLFLAQK 258

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE--REFNRLKDIDIH 288
             +V  +EI   ++E A+ N   N + N +    +++E       E  RE +        
Sbjct: 259 AKQVYGLEIVPEAIENAKKNAEKNGLQNAEFFVGAAEEVLPKWVEEQKRELSAKGADCGI 318

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLA 345
                 + +DPPR G D+A +  V   +   I+Y+SC+P SL RD+  L    + +E+  
Sbjct: 319 GDMVDVVSLDPPRKGCDEACLSAVLELSPKRIVYVSCDPGSLARDIKYLGEGGYVLEKWV 378

Query: 346 LFDQFPYTRHMECGVLLVRKPS 367
             D FP T H+E   LL ++ S
Sbjct: 379 GIDNFPRTGHVETIALLQKEES 400


>gi|73541780|ref|YP_296300.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia eutropha
           JMP134]
 gi|91207810|sp|Q46ZH7|RUMA_CUPPJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|72119193|gb|AAZ61456.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ralstonia eutropha
           JMP134]
          Length = 463

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 136/384 (35%), Gaps = 39/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   L   +        ++           YR RA   + +    
Sbjct: 99  GCSMQHLDSRAQLAIKQRVLEDNLWHLSKVRPEVMFRPIAGPDWGYRYRARLTVRYVAKK 158

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         I+A+++ +   +     +R ++ QI+       
Sbjct: 159 GGVLVGFHERKSSYVADMTSCEILPPHISAMLVPLRELVTGL-SIRDRMPQIELAVGHEV 217

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172
            A+V     R+L+         LR        Q  L  +   T +    LDR+     L 
Sbjct: 218 TALVL----RILEPLTDADKDLLRAFADQHNVQFWLQPKGPDTVVPFYPLDRELA-YTLP 272

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
             G  + ++     FTQ N  IN  ++   L       Q  LL+L+CG GNF+L LA   
Sbjct: 273 EFGIRMPFK--PTDFTQVNHHINRVLIGRALRLLDVQPQDRLLDLFCGIGNFTLPLATQG 330

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ +E ++     A  N   N +           EF         F    +      R
Sbjct: 331 RSVMGIEGSEALTTRALANAGYNGL-------AEKTEFAC----RNLFEVTAEDIAALGR 379

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    +DPPR G       + +            I+Y+SC+P +L RD  +L     + +
Sbjct: 380 FDRWLIDPPREGALAVCKALGELSQQGSDVLPQRIVYVSCSPATLARDAGLLVHEAGYRL 439

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
               + + FP+T H+E   +  R+
Sbjct: 440 AGAGVVNMFPHTSHVESIAVFERR 463


>gi|332160480|ref|YP_004297057.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664710|gb|ADZ41354.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 425

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 145/365 (39%), Gaps = 32/365 (8%)

Query: 12  QQLAE--KVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            QL +  K D L+++++       Q   +       YR RA   + +        M  +Q
Sbjct: 79  SQLQQMSKADSLQRLIMREAGACPQLDPVICGSEYGYRRRARLGLLYQPKQHRLQMGFRQ 138

Query: 67  T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           T   + + I +       +  L++ +   +     +R +L  ++ + + +   +V     
Sbjct: 139 TESHDLVCIKHCPVLRPELERLLLPLYQCLSGLQAVR-RLGHVELVLADNGPLMVL---- 193

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD         L D     +  + L G ++  +  +      E        L      
Sbjct: 194 RHLDTLKEVDRAALIDFAKREQVAVYLAGDSDNVEKLIG-----EEPYYQIEGLRLAFHP 248

Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   +A         +L+L+CG GNF+L LA+    V+ VE     
Sbjct: 249 RDFIQVNDTVNQQMVAQAIAWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAAL 308

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   +YN   N + NV     + +            + +      +  F  + +DP R+G
Sbjct: 309 VANGQYNALNNALPNVSFFHENLE------------SDISRQPWATQGFDKVLLDPARAG 356

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
                  +V+  P  ++Y+SCNP +L RD   +L+  + + ++ + D FP+T H+E   L
Sbjct: 357 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416

Query: 362 LVRKP 366
            +++P
Sbjct: 417 FMQEP 421


>gi|253998673|ref|YP_003050736.1| 23S rRNA 5-methyluridine methyltransferase [Methylovorus sp.
           SIP3-4]
 gi|253985352|gb|ACT50209.1| RNA methyltransferase, TrmA family [Methylovorus sp. SIP3-4]
          Length = 457

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 139/392 (35%), Gaps = 48/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
              L    +  Q+A K   L   +        +            YR +A   + H    
Sbjct: 80  GCALQHLDFSGQVAAKQRLLEGNLWHIGKVKAETMLPPIYGPAWGYRHKARLRVRHVPKK 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++ +     +D        ++AL++ +   I     +R +L QI+    +  
Sbjct: 140 GGVLVGFNEKASSFVAHMDSCEVLPPHVSALIVPLQHMIAQL-SVRERLPQIEVAVGEQA 198

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172
             +V     R+L+    E    L+        QI    +   T +    L+   +   L 
Sbjct: 199 TVLVL----RILEALRPEDGPILKAFADTHGVQIWTQTKGPDTVMPFYPLNGPALTYSLP 254

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
               T  ++  E  FTQ N  IN  ML   +        D + + +CG GNF+L +AR  
Sbjct: 255 EFQLTYPFKPTE--FTQVNPHINRVMLRRAMQLLGAQPQDRIADFFCGLGNFTLPIARSG 312

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             VL +E +   V  A  + + N + +            Q   RE +  ++    + S  
Sbjct: 313 ATVLGMEGSAALVARAVESASLNGLAD------------QVEYREADLFKMTPEALQSLG 360

Query: 292 -FKTIFVDPPRSGLDDATVGM----------------VQAYPHILYISCNPDSLCRDLSI 334
            F    +DPPR G  +    +                V     I+Y+SCNP +L RD  +
Sbjct: 361 YFDKWLIDPPRDGALELIKSLADVGRGEDGAMPVAPKVAGPERIVYVSCNPATLARDAGV 420

Query: 335 LS--TTHTIERLALFDQFPYTRHMECGVLLVR 364
           L     + +    + + FP+T H+E   L  +
Sbjct: 421 LVNLKGYRLLAAGVINMFPHTSHVESIALFEK 452


>gi|170289500|ref|YP_001739738.1| RNA methyltransferase [Thermotoga sp. RQ2]
 gi|170177003|gb|ACB10055.1| RNA methyltransferase, TrmA family [Thermotoga sp. RQ2]
          Length = 439

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 145/385 (37%), Gaps = 46/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57
               +  +YE QL  K + L  +     +  +++   EP     HYR + EFH       
Sbjct: 76  GCHWMDVKYETQLRYKKEVLIDLFERSNLK-VEVEDVEPSDLVFHYRTKMEFHF----QG 130

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               +  + +   + I                    +  L I +      + +L+  + +
Sbjct: 131 RKLGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNIPVYNWETRKGVLKHLVIR 190

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             + T Q     VT    +     W    +R       + + I  +  +  + +      
Sbjct: 191 YAFSTDQFMVIFVT----KTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYR 246

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
             Y +  +        ++    +F Q N  I   +++ V         ++ L+LY G G 
Sbjct: 247 TLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYRELALQGNEVVLDLYAGIGT 306

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           FS+  +    RV++VE ++ +V+A + N   N   N++ V     +F +           
Sbjct: 307 FSVRTSFSAARVISVESSRVAVKAGKANANINSRRNIEYVEQDVLDFLKNY--------- 357

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTH 339
                 S R   I +DPPRSG     +  +   +   I+Y+SC P +L RDL +L    +
Sbjct: 358 ------SGRADRIILDPPRSGAGPEAMKEIARLSPERIVYVSCEPSTLVRDLKVLVENGY 411

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
           +I  +  FD FP T H+E  V LV+
Sbjct: 412 SIVGVKPFDMFPQTYHVETAVTLVK 436


>gi|116330374|ref|YP_800092.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116124063|gb|ABJ75334.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 393

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 137/396 (34%), Gaps = 52/396 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHD--GDD 57
               L   YE+QL  K + + +  + FQ       I   +   YR + +    H   G  
Sbjct: 17  GCDRLHISYEKQLQHKQEGVEKRFVGFQELEIRPIIKSPKEQMYRHKVQLPFGHRKIGKK 76

Query: 58  LYHIMFDQQTKERMRIDY--FMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104
               +     +    ID          +  +   +    R E            LLR  +
Sbjct: 77  TVLTLGLHNKENVYIIDQKECRIQDADLTTVAAAIRHWARTENVIPYNEKNGSGLLRHIV 136

Query: 105 FQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRL----------RDALHARKYQIQ 150
            +    + +    IVT        + L D       +              L     +  
Sbjct: 137 LRKANASQEILVGIVTNATEIPGRKKLADRLHSYIQQFLCNEKSKAEVVGILQNVNQRNT 196

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
            +    K      R +V E++      L ++   ++F Q N     ++ + VL       
Sbjct: 197 KVVLGEKETTWYGRHFVKEKIG----DLDFQIGLSTFFQVNPFQIKNLYDLVLQE-LPSD 251

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            ++++ YCG G  SL +A    +V+ +E    S+ +A     AN + NV   +       
Sbjct: 252 SNVVDAYCGIGTISLYVASKSKKVVGLEENPNSIRSAVGAAKANGIVNVAFTKGKVLRTL 311

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           QA   E              +   + +DPPR GLD  T  ++       ILY+SCNP++L
Sbjct: 312 QAALNE--------------KSDVVILDPPREGLDPETKKILLNSKIHKILYVSCNPETL 357

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD   L+      ++   D FP+T H+E   +  R
Sbjct: 358 LRDAVALTKVFKYTKMTPVDLFPHTSHLESVSVFTR 393


>gi|145636398|ref|ZP_01792067.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           PittHH]
 gi|145270563|gb|EDK10497.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           PittHH]
          Length = 354

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 146/364 (40%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W + +     M  +Q
Sbjct: 14  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQ 72

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 73  KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 130

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +        L       K  + L       +I  D  Y      +    L +    
Sbjct: 131 KNLAE---IDRTLLLKFAEQEKLMLFLQSDEGIEQIYGDAPYYQFSDGIK---LHFDI-- 182

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L  A+     + +E     
Sbjct: 183 RDFIQVNSALNERMVNTALDWLELSQQDCVLDLFCGMGNFTLPFAKRVKSAVGIEGVFEM 242

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N A N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 243 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 290

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 291 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 350

Query: 362 LVRK 365
              K
Sbjct: 351 FTTK 354


>gi|281413076|ref|YP_003347155.1| RNA methyltransferase, TrmA family [Thermotoga naphthophila RKU-10]
 gi|281374179|gb|ADA67741.1| RNA methyltransferase, TrmA family [Thermotoga naphthophila RKU-10]
          Length = 439

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 148/385 (38%), Gaps = 46/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDD 57
               +  +YE QL  K + L  +     +  +++   EP     HYR + EFH       
Sbjct: 76  GCHWMDVKYETQLRYKKEVLIDLFERSNLK-VEVEDVEPSDLVFHYRTKMEFHF----QG 130

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               +  + +   + I                    +  L + +      + +L+  + +
Sbjct: 131 RKLGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRKGVLKHLVIR 190

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
             + T Q     VT    +     W    +R       + + I  +  +  + +      
Sbjct: 191 YAFSTDQFMVIFVT----KTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYR 246

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGN 222
             Y +  +        ++    +F Q N  I   +++ V         ++ L+LY G G 
Sbjct: 247 TLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYRELALQGNEVVLDLYAGIGT 306

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           FS+  +    RV++VE ++ +V+A + N   N   N++ V     +F +           
Sbjct: 307 FSVRTSFSAARVISVESSRVAVKAGKANANINSRRNIEYVEQDVLDFLKNY--------- 357

Query: 283 KDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTH 339
                 S R   I +DPPRSG   +A   +V+  P  I+Y+SC P +L RDL +L    +
Sbjct: 358 ------SGRADRIILDPPRSGAGPEAMKEIVRLSPERIVYVSCEPSTLVRDLKVLVENGY 411

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
           +I  +  FD FP T H+E  V LV+
Sbjct: 412 SIVGVKPFDMFPQTYHVETAVTLVK 436


>gi|294649349|ref|ZP_06726781.1| 23S rRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824789|gb|EFF83560.1| 23S rRNA (uracil-5-)-methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 463

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 152/383 (39%), Gaps = 33/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             +L     ++Q+  K + L+  +  F     +      RS  I YR RA   + +    
Sbjct: 98  GCSLQHIHPDEQILLKQNVLQSHLQHFAGLQPEQWLTPIRSNKIDYRRRARIGVRYIPRQ 157

Query: 58  LYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              +M  ++        I         ++  + E+   +      +A +  ++      +
Sbjct: 158 DRLVMGFREHHSNHLTTIHQCKVLDQTLSDAIPELRKCLEGLMA-KAHIGHVELAMGDHE 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A++     R L++        LR     R++Q+ L  R   +   +D      RL    
Sbjct: 217 VALLI----RHLEELNVSDVNHLRQFALQRQWQLYLQPRGADSLHRVDDVQAPMRLHYHL 272

Query: 176 RTL--IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
                 +      FTQ N+ +N  M++      +  +G+ +L+L+CG GNFSL LAR   
Sbjct: 273 DDFDIRFAFSPLDFTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVG 332

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ VE +   V  A  N  AN +N        S++ T+                  
Sbjct: 333 DTGQVIGVEASDEMVLRATENAKANSLNQAIFF---SQDLTKDFS---------HHPWAK 380

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLAL 346
             F  + +DPPRSG  +  +  V  +    I+Y+SCNP +L RD  +L+   + +++ A+
Sbjct: 381 QGFDALLIDPPRSGAFE-VMQYVPNFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAV 439

Query: 347 FDQFPYTRHMECGVLLVRKPSGW 369
            D F +T H+E   L  +  S  
Sbjct: 440 LDMFTHTEHVESIALFEKNESDK 462


>gi|254369699|ref|ZP_04985709.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122658|gb|EDO66787.1| 23S rRNA (Uracil-5-)-methyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 449

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 152/380 (40%), Gaps = 35/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PN---LQIFRSEPIHYRMRAEFHIWH-- 53
             +L     + Q+  K   L   +        P      +  S    YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVS 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +     ++  +    ID  +  + L+   + E+ + I    + +  + Q++     
Sbjct: 147 KKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERL 171
           +  A++     R L+    E   +LR       Y I L  +   T  ++    D   ++L
Sbjct: 206 TRPAMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKL 261

Query: 172 TVAGRTLI---YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           +      I   +    N FTQ N  IN  M++  +      + D +++L+CG GNF+L +
Sbjct: 262 SYQPAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPI 319

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           ++H   V+ VE     V+ A+     N++ NV      +    ++   +  FN       
Sbjct: 320 SQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFN------- 369

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
            ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL  +  + +   
Sbjct: 370 -NFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKDYKLISA 428

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H+E   +  +
Sbjct: 429 GVMDMFPHTMHVESIAVFEK 448


>gi|289548942|ref|YP_003473930.1| RNA methyltransferase, TrmA family [Thermocrinis albus DSM 14484]
 gi|289182559|gb|ADC89803.1| RNA methyltransferase, TrmA family [Thermocrinis albus DSM 14484]
          Length = 424

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 153/375 (40%), Gaps = 43/375 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----NLQIFRSEPIHYRMRAEFHIWHDGD 56
              +    Y  QL  K D L   +              +      HYR+R +F +    +
Sbjct: 78  GCQIQHMDYSAQLEAKNDILLDNLKRIGKLQSVNLGPPVVSGSEFHYRLRVQFKV----E 133

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD- 115
           D     F   T + + I+  +     IN ++  +    R    LR    +I  L S  + 
Sbjct: 134 DGKVGFFAWGTHQLVDIEECLLVHRDINQIIPTLRELSRQVKDLR----EIHVLYSPWEK 189

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRD-ALHARKYQIQLIGRANKTKI---CLDRDYVDERL 171
           + ++ L+    +D   ++   +L++  +  +   +        T +    L RD+     
Sbjct: 190 EFLLKLVTVSPID---KDRLRKLKELYIPPQVVGVGNYTMLRDTPVRRYFLGRDFT---- 242

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
            +      YR   +SF Q N  +    +  VL   + ++   +E++CG G FSL L++  
Sbjct: 243 FIQVGPYRYRVSADSFLQVNYTLYEEFVNAVLEKVQRVR-KAVEIHCGIGFFSLPLSQRA 301

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
           + + A ++ + +V  A+Y+   N V+ V  V   + +  + +  E               
Sbjct: 302 EFLYASDVNQVAVRDAQYSARINSVDKVVFVHERAVDTLKNLAGE--------------V 347

Query: 292 FKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348
              + VDPPR GL +    ++      +I+Y+SCNP +L RDL +LS   ++++ + L D
Sbjct: 348 IDLLVVDPPREGLSEGETQLILSNKPKNIVYVSCNPSTLARDLKVLSKGGYSLKVIRLVD 407

Query: 349 QFPYTRHMECGVLLV 363
            FP T H+E    L 
Sbjct: 408 NFPQTYHVESVSFLE 422


>gi|318607054|emb|CBY28552.1| 23s rRNA (Uracil-5-)-methyltransferase RumA [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 425

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 144/365 (39%), Gaps = 32/365 (8%)

Query: 12  QQLAE--KVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            QL +  K D L+++++       Q   +       YR RA   + +        M  +Q
Sbjct: 79  SQLQQMSKADSLQRLIMREAGACPQLDPVICGSEYGYRRRARLGLLYQPKQHRLQMGFRQ 138

Query: 67  T--KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           T   + + I +       +  L++ +   +     +R +L  ++ + + +   +V     
Sbjct: 139 TESHDLVCIKHCPVLRPELERLLLPLYQCLSGLQAVR-RLGHVELVLADNGPLMVL---- 193

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R LD         L D     +  +   G ++  +  +      E        L      
Sbjct: 194 RHLDTLKEVDRAALIDFAKREQVAVYPAGDSDNVEKLIG-----EEPYYQIEGLRLAFHP 248

Query: 185 NSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   +A         +L+L+CG GNF+L LA+    V+ VE     
Sbjct: 249 RDFIQVNDTVNQQMVAQAIAWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAAL 308

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   +YN   N + NV     + +            + +      +  F  + +DP R+G
Sbjct: 309 VANGQYNALNNALPNVSFFHENLE------------SDISRQPWATQGFDKVLLDPARAG 356

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
                  +V+  P  ++Y+SCNP +L RD   +L+  + + ++ + D FP+T H+E   L
Sbjct: 357 AAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMAL 416

Query: 362 LVRKP 366
            +++P
Sbjct: 417 FMQEP 421


>gi|262369859|ref|ZP_06063186.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           johnsonii SH046]
 gi|262314898|gb|EEY95938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           johnsonii SH046]
          Length = 462

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 153/381 (40%), Gaps = 40/381 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH-----YRMRAEFHIWH--D 54
              +     ++Q+  K D L+  +  F     + +   P+      YR +A   + +   
Sbjct: 98  GCNMQHIHPDEQIRLKQDVLKSHLQHFAGIQPEQWL-PPLRSLREDYRRKARIGVRYLPH 156

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL---INALMIEMMATIRLEPLLRAKLFQIDYLT 111
            D L     ++QT +   ID  +        I  L   + +        +A +  I+   
Sbjct: 157 KDQLVVGFRERQTNKLTSIDRCLVLDQAFGSITRLKQLLQSLTA-----KAAIGHIELAM 211

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
              D A+      +L      E   RL+     R +Q+ L      +   +D ++ + RL
Sbjct: 212 GDCDIALTVRHTEKLNT----EDVNRLKQFALDRGWQLYLQAAGPDSLKRMDDEHAEMRL 267

Query: 172 T--VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
              +    + +    + FTQ N+ IN  M++         QG+ +L+L+CG GNFSL LA
Sbjct: 268 HYRLNDFDVAFGFNPHDFTQVNSTINPQMVKLACDLLDLKQGERVLDLFCGLGNFSLPLA 327

Query: 229 RHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           R       V+ VE ++  V+    N   N +  +K     S++ T+        N+    
Sbjct: 328 RCVGETGQVVGVEGSEEMVQRGAENAERNALGQLKFF---SQDLTKDFSHHSWANQ---- 380

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIER 343
                 F  + +DPPR+G ++    M       I+Y+SCNP +L RD  +L    + + +
Sbjct: 381 -----GFDALLIDPPRAGAEEIMHYMPNFGAKRIVYVSCNPATLARDAGLLVQQGYRLVK 435

Query: 344 LALFDQFPYTRHMECGVLLVR 364
             + D F +T H+E   L  +
Sbjct: 436 AGVMDMFTHTGHVESIALFEK 456


>gi|260582573|ref|ZP_05850363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           NT127]
 gi|260094384|gb|EEW78282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           NT127]
          Length = 438

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 145/364 (39%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W +       M  +Q
Sbjct: 98  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIDMGFRQ 156

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +        L       K  + L       +I  D  Y      +    L +    
Sbjct: 215 KNLAE---IDRTLLLKFAEQEKLMLFLQSDEGIEQIYGDAPYYQFSDGIK---LHFDI-- 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N+ +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N   N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 327 VQKAAQNAERNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434

Query: 362 LVRK 365
              K
Sbjct: 435 FTTK 438


>gi|257066487|ref|YP_003152743.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM
           20548]
 gi|256798367|gb|ACV29022.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM
           20548]
          Length = 457

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 150/400 (37%), Gaps = 57/400 (14%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSE-PIHYRMRAE--FHIWHD 54
            G       YE +L  KVD ++ +     +    +++I +S     YR + E  F     
Sbjct: 80  GGCAYQKLAYETELMLKVDMIKNLFKDNSIDYSGDIKINQSPKTKAYRNKMEYTFGDSKK 139

Query: 55  GDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRA 102
           G DL   +  Q    E +            N +   + A  R            E LLR 
Sbjct: 140 GGDLVLGLHRQNRFYEIVDTTNCNIIDGDFNTIRESVQAYFREKKTDFYHKRTREGLLRH 199

Query: 103 KLFQIDYLTSQSDQAIVT------------LIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
            + +  + T +    +VT            L  ++LL     +   ++    H       
Sbjct: 200 LIIRKAHRTGEIMVILVTTSDESFDSLRINLFLNKLLS---IDLVGKIVSVYHVINDSPA 256

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGI 209
                 K  +   ++++ E +      L +     SF QPN      + +     A    
Sbjct: 257 DAVIVEKLNLIYGKEFIKEEML----GLTFNISPFSFFQPNIYTAEKLYQKAFDLANINQ 312

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             D+L+LY G G  + V+A+       +EI + +++ A  N   N ++N+  +       
Sbjct: 313 SMDVLDLYSGTGTITQVMAQRARTATGIEIVEEAIDKAWENAKINEIDNINFLCGDV--- 369

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
                       L++I+    ++  I +DPPR+G+   ++  +        +YISCNP +
Sbjct: 370 ------------LEEIEKVGDKYDVIILDPPRAGISPKSLEKILKIDTEKFIYISCNPKT 417

Query: 328 LCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
              +L   ++    I+   ++DQFP +RH+E   LL RK 
Sbjct: 418 QVENLKEFINQGFEIKDYEIYDQFPKSRHLEAIALLTRKK 457


>gi|51245295|ref|YP_065179.1| RNA-methyltransferase [Desulfotalea psychrophila LSv54]
 gi|50876332|emb|CAG36172.1| related to RNA-methyltransferase [Desulfotalea psychrophila LSv54]
          Length = 444

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 144/384 (37%), Gaps = 40/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---------QIFRSEPIHYRMRAEFHIW 52
              L     E QL  K   +++ +     P L          I   +   YR R   HI 
Sbjct: 75  GCNLQHATAELQLEIKEAIVKESLTRSGKPELAKASALIQAPIASPQDFFYRQRIRLHI- 133

Query: 53  HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
              +         Q+ + + I   +  S  IN ++  +        + +        L  
Sbjct: 134 --DEYGRMGFRQHQSHDIIAIKKCLLASPQINEVLTALEEHEEHGEICQLASQLELILNP 191

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK----------YQIQLIGRANKTKICL 162
            ++Q  +  +  R    A    A RL + + +             Q        + K+ L
Sbjct: 192 ATEQVQLVYLLKRKSRPADTNRAKRLGEKIASVDCIYFIGENFPLQSAYCKTPEEGKV-L 250

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
             DY  + L     ++ +    N F Q N   NV M+E VLA A    +  +L+L+CG G
Sbjct: 251 SLDYKPQALAGKKISMQWEV--NGFCQVNIKQNVQMIETVLAFADIRDEESVLDLFCGMG 308

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           NFS+ LA     V   E    ++ +A+ N   N ++N    +            +     
Sbjct: 309 NFSIPLACQAKAVTGFEGQGSAIRSAKKNALNNGLDNCSFYQ------------KPVHKA 356

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-TH 339
             ++      +  + +DPPR G  +    + +     ++YISC+P +L RDL+ LS    
Sbjct: 357 CAELIADKRVYDCVIIDPPRQGAPELAGQLAKLCQKRLIYISCDPATLTRDLAELSKQGF 416

Query: 340 TIERLALFDQFPYTRHMECGVLLV 363
            I+++   D FP T H+E  VLL 
Sbjct: 417 QIKKIQPIDMFPQTYHIENVVLLE 440


>gi|139437219|ref|ZP_01771379.1| Hypothetical protein COLAER_00358 [Collinsella aerofaciens ATCC
           25986]
 gi|133776866|gb|EBA40686.1| Hypothetical protein COLAER_00358 [Collinsella aerofaciens ATCC
           25986]
          Length = 442

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 133/370 (35%), Gaps = 34/370 (9%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRS---------EPIHYRMRAEFHIWHDGDDLYHIM 62
            QLA K   LR  +        +             +   YR + E         +   M
Sbjct: 89  AQLAAKEQNLRSTLERIGKFAPEQVDELVQPICHTKDDWGYRNKIELEPTVVNGRVRLGM 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAIVTL 121
                 + + +D            +  ++  +  L       L ++    S+  +A+   
Sbjct: 149 HGVDPSKIVAVDSCPLFDKRFPKALKSVVGALNYLSGSHNLGLERVGIRASRRTKALEVA 208

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC--LDRDYVDERLTVAGRTLI 179
           ++         + +  L DA H       +     K +    ++    +   T       
Sbjct: 209 LWTPTGSFPRSQVSRVLADAAHPTSIVRVMSKGEKKARRVSKVEMLAGEGSWTENIAEGQ 268

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVE 238
            R    SF Q N      ++E V+ A    + +L ++LYCG G F+L LAR  D V AVE
Sbjct: 269 MRLSAPSFFQVNTKGAEILIELVMEALDPQEDELAVDLYCGAGTFTLPLARRCDFVAAVE 328

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
              P+V   R N+  N ++NV ++   +                 D D        + VD
Sbjct: 329 AYGPAVRDLRRNLEINKLDNVDVIGGDA------------VREFPDQDA-----DVLVVD 371

Query: 299 PPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
           PPR+GL    + ++ +     + Y+SC+P +L RDL       T +  ++   D FP T 
Sbjct: 372 PPRAGLAPEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEGTFSPVKITPVDLFPQTF 431

Query: 355 HMECGVLLVR 364
           H E  V L R
Sbjct: 432 HCETVVHLKR 441


>gi|223042058|ref|ZP_03612234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus minor
           202]
 gi|223017133|gb|EEF15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus minor
           202]
          Length = 440

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 146/370 (39%), Gaps = 29/370 (7%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDD 57
            G  +     E Q   K   L Q +   Q   +    +   +   YR R +  +     +
Sbjct: 91  GGCQMQHVSLEVQRETKQQALFQRLQKLQSSPIALEPMLVGQAKGYRRRTKLSVALQNGN 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +      Q + + + ++     +    + ++  +  + L    +  L  I+ + + +  A
Sbjct: 151 VVMGFRMQNSNQIIPLEQCEILTPA-LSALLLPLQNLLLNWTQKKHLGHIELVEADNTVA 209

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           ++     R + +  +    +L       K  + L+  A + +         E+       
Sbjct: 210 MLL----RYMGELAQSDLAQLLAFAKETKLSLFLMNDAQQIEHICG-----EKPYYKLND 260

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L        F Q NA  N  M+   L      + D +L+L+CG GNF+L LA+    V+ 
Sbjct: 261 LTLHFSIRDFIQVNAEQNQKMVAQALNWLALEKSDRVLDLFCGMGNFTLPLAQQAGYVVG 320

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +  V  AR N   N ++NV   + +  E            R  D    +  F  + 
Sbjct: 321 VEGVEEMVVTARQNAVENQLDNVAFYQTNLDE------------RFVDQPWATEAFNKVL 368

Query: 297 VDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354
           +DP R G   A   + +  P  I+Y+SCNP +L RD   L  + +++ ++A+ D FP+T 
Sbjct: 369 LDPARHGAYFALDHLCELNPERIVYVSCNPATLVRDAEKLIKSGYSLAKVAVIDMFPHTG 428

Query: 355 HMECGVLLVR 364
           H+E   L V+
Sbjct: 429 HLESISLFVK 438


>gi|302335620|ref|YP_003800827.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084]
 gi|301319460|gb|ADK67947.1| 23S rRNA m(5)U-1939 methyltransferase [Olsenella uli DSM 7084]
          Length = 446

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 126/371 (33%), Gaps = 34/371 (9%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
            Y  QLA K   +   +             +        +P  YR + E      G    
Sbjct: 90  SYSVQLAAKRANVVDALARIGRLPAKEAERLVGPCAVAGDPWGYRNKVELAFARRGGRAL 149

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAI 118
             M     +  +++D           +   +   +       A  + +I    S+    +
Sbjct: 150 VGMHGAGGQGVIKVDRCPLLDKRYERMTKSVAGAVSYLANSHALDIERIGIRASRRTGEV 209

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTVAGR 176
              ++         + A  L DA         L     K +      R            
Sbjct: 210 EVALWTEPGPFPRAQVAKVLGDACRTTSVVRVLTKGPQKARRVTGVERLAGRGHWGELVG 269

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
           +        SF Q N      ++  VL   +  + D  ++LYCG G F+L LAR    V 
Sbjct: 270 SERMSVSAPSFFQVNTRGAERLVSLVLEGLRPTEDDGAMDLYCGAGTFTLPLARRCAWVS 329

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AVE   P+V   R+N+    ++NV      +         +REF +             I
Sbjct: 330 AVESYGPAVRDLRHNLDVARLDNVDAQGGDA---------DREFPQ--------SDADVI 372

Query: 296 FVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST--THTIERLALFDQFP 351
            VDPPR+GL  A V  + A     I Y+SC+P +L RDL+         IE +   D FP
Sbjct: 373 VVDPPRAGLGGAVVDKLSAQDARAIAYVSCDPATLARDLARFRERAAFAIESVVPVDLFP 432

Query: 352 YTRHMECGVLL 362
            T H+E   +L
Sbjct: 433 QTFHVETVTIL 443


>gi|269213835|ref|ZP_06158206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria cinerea ATCC
           14685]
 gi|269145156|gb|EEZ71574.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria cinerea ATCC
           14685]
          Length = 461

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 143/373 (38%), Gaps = 25/373 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDG-D 56
             +L       Q+A K   + + +        +           HYR RA F +  D   
Sbjct: 89  GCSLQHISPTAQVAFKQRIMEEQLERIGKVKPKQILPPIYGHVWHYRDRARFSVSLDKSC 148

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      ++T + + I   M     ++  +  +   ++      +     ++    S+ 
Sbjct: 149 RLKLGFQAKKTNDVVGISSCMLIPKPVSDKLPAIRELLQDLAEGGSIARFAEFYRG-SEI 207

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL-DRDYV-DERLTVA 174
            ++ + +   L         +  D+  +  +QI L      ++     +D +    L   
Sbjct: 208 TVLNIAFKSKLRQNDESRIRQWFDSELSDDWQIWLQIEGKVSEPFYPQKDTILKYTLPEF 267

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G  + +R     FTQ N   N  M+   +      QG+ + +L+CG GNFSL +A+    
Sbjct: 268 GIEMPFR--PGDFTQINTDTNRLMVSRAIKMLDIRQGERVADLFCGLGNFSLPIAKSGAS 325

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE A+  V  AR N   N             +F  A      F+  ++      +F 
Sbjct: 326 VVGVEGAENLVGRARQNARLNG-------CGGQTDFIAA----NLFDCTENTVASWGKFD 374

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
            + +DPPRSG  +    +   Y    I+Y+SCNP +L RD  +L    + + ++ + + F
Sbjct: 375 KMLIDPPRSGAYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYILGQVGIMNMF 434

Query: 351 PYTRHMECGVLLV 363
            +T H+E   +  
Sbjct: 435 AHTSHVESIAVFE 447


>gi|145631421|ref|ZP_01787191.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           R3021]
 gi|144982958|gb|EDJ90467.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           R3021]
          Length = 438

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 144/364 (39%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+         YR R    +W +       M  +Q
Sbjct: 98  EMQRKAKESALFKRLSKLQS-EPISFQPMICGNAWAYRRRVRLSLWFNPSTKQIDMGFRQ 156

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +        L       K  + L       +I  D  Y      +    L +    
Sbjct: 215 KNLAE---IDRTLLLKFAEQEKLMLFLQSDEGIEQIYGDAPYYQFSDGIK---LHFDI-- 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNRALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N A N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 327 VQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITL 434

Query: 362 LVRK 365
              K
Sbjct: 435 FTTK 438


>gi|86158782|ref|YP_465567.1| (Uracil-5)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775293|gb|ABC82130.1| 23S rRNA m(5)U-1939 methyltransferase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 438

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 138/374 (36%), Gaps = 30/374 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
               L   Y  QLA K   L + +                +    P+ YR RA+FH  HD
Sbjct: 84  GCEWLHVAYPVQLAAKERALHEALRRIGKLEPGSYPARPIVPSPSPLRYRARAKFH--HD 141

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
                 + F +++ E +R+         ++AL   +   +     L  +   +++  +  
Sbjct: 142 RAAGRLVFFRRRSHEPVRLRECHLLEPGLDALREAVGPALAA-ARLSPREVALEWSEAAG 200

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLT 172
             A   L     L +       R    L        L+ +A   +     D V    R  
Sbjct: 201 RGAAWLL-----LPEVTSPVRTRAEALLREVPALQGLVLQAEGGQPVTAGDPVLRHARAP 255

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                   R   + F Q N G N  ++E  L        D+LELYCG GNF+  L+    
Sbjct: 256 GRPEAGTQRSRPDVFQQANRGANARLVETALDLLAPEGEDVLELYCGAGNFTGPLSDRAR 315

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V A+E+  P+++ AR   A     NV+     +    +A  RE            + RF
Sbjct: 316 SVSAIEVQGPALDLAR---ADLGGRNVRFFAGDALALARAFGRESGPG--------ARRF 364

Query: 293 KTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQF 350
               +DPPR G       +     P  +Y+SC+P +  RDL + +   + +  +   D F
Sbjct: 365 GAALLDPPREGARGIGPALRDLGVPRAVYVSCDPATFARDLRACVEAGYRVAAVVPVDMF 424

Query: 351 PYTRHMECGVLLVR 364
           P T H+E   LL R
Sbjct: 425 PQTHHVEGVALLER 438


>gi|302879059|ref|YP_003847623.1| RNA methyltransferase, TrmA family [Gallionella capsiferriformans
           ES-2]
 gi|302581848|gb|ADL55859.1| RNA methyltransferase, TrmA family [Gallionella capsiferriformans
           ES-2]
          Length = 435

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 141/363 (38%), Gaps = 27/363 (7%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DGDDLYHIMFDQQ 66
           Q+A K   L   +        +        +   YR RA     +    + +     +++
Sbjct: 88  QVAVKQRILEDSLARIGKVKPESILPAIYGQAWGYRERARISAKYVIKKEKMLVGFHEKR 147

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           +     +         + +L IE +AT+     +R KL QI+    +    +V     R+
Sbjct: 148 SSFVADMQSCEILEPKVASL-IEPLATLLAGLSIRDKLPQIEVAVGEHVYVLVL----RI 202

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLIYRQIEN 185
           +     E    LR        Q  L  +  +T +     D  +   ++    ++      
Sbjct: 203 MAPLSCEDEAALRAFADQHVVQFWLQTKGPETVVPFYPLDAPELTYSLPEFGVVMPFAPG 262

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            FTQ N+ +N  M+   +      +G+ +++ +CG GNF+L +AR   +V  +E +   V
Sbjct: 263 EFTQVNSQLNRVMISRAMRLLNPQKGERIVDFFCGLGNFTLPIARSGAQVTGIEGSDALV 322

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A  N A+NH++              A      F   +       RF    +DPPR G 
Sbjct: 323 KRAAQNAASNHLS-----------VNTAFSARNLFEMDEAALAALGRFDKWLIDPPRDGA 371

Query: 305 DDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVL 361
            +    +    A   I+Y+SCNP +L RD + L    + ++   + + FP T H+E   +
Sbjct: 372 MELVKSITPEIAPDLIVYVSCNPATLARDAAELVLRGYVLKSAGVMNMFPQTSHVESIAV 431

Query: 362 LVR 364
            VR
Sbjct: 432 FVR 434


>gi|224826668|ref|ZP_03699769.1| RNA methyltransferase, TrmA family [Lutiella nitroferrum 2002]
 gi|224601269|gb|EEG07451.1| RNA methyltransferase, TrmA family [Lutiella nitroferrum 2002]
          Length = 516

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 141/379 (37%), Gaps = 31/379 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEF--HIWHDG 55
             ++   ++  Q+A K   L   +      + +            YR RA     +    
Sbjct: 78  GCSMQHVEFSAQVAIKQRVLEDSLKHIGKVSAERMLTPIAGPAWGYRHRARLSARLVEKK 137

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         I+AL++ +   I     +R ++ QI+    +  
Sbjct: 138 GGVLVGFHEKRSSYIAEMSECHILPPHISALIVPLREMIYTL-SIRDRMPQIEVAVGEKL 196

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-----LDRDYVDER 170
             +V       +  A      R  D        +Q+  +      C     LD   +   
Sbjct: 197 DILV-FRNMDAISAADETILRRFSDTHSQPGRPLQIWLQPKGPDTCYPLYPLDAPKLTYT 255

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L      + Y   E  FTQ N  IN  M+   L       G+ + +++CG GNF+L +AR
Sbjct: 256 LRDFSVEMPYYPTE--FTQVNPEINNVMVTRALRLLDPQPGERIADMFCGIGNFTLPIAR 313

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V  +E ++  V+ A  N + N + +     M+             F+  ++     
Sbjct: 314 SGADVHGMEGSEALVKRAVENASHNRLEHKVSYEMA-----------NLFDVTEESFAAL 362

Query: 290 YRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--STTHTIERLA 345
            +F  + VDPPR G       +    A   I+Y+SCNP +L RD  IL  +  +T++   
Sbjct: 363 GKFDKMLVDPPRDGAVQLLKALTDDTAPQRIVYVSCNPATLARDAGILVNTKGYTLKAAG 422

Query: 346 LFDQFPYTRHMECGVLLVR 364
           + + FP+T H+E      +
Sbjct: 423 IINMFPHTAHVESVAWFEK 441


>gi|168334686|ref|ZP_02692826.1| RNA methyltransferase, TrmA family protein [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 454

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 77/386 (19%), Positives = 139/386 (36%), Gaps = 45/386 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIW---HDGDD 57
              L    YE+QL  K+  + Q++        +I  S     YR + E+       DG  
Sbjct: 81  GCALQNLPYEKQLERKLRWVNQIL---NFEVAEILGSPKWFQYRNKMEYTFGDTVKDGPL 137

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA--TIRLEPLLRAKLFQ------IDY 109
              +   + T + + +D         NA++   +    +   P  +    Q      +  
Sbjct: 138 ALGLHKKRTTFDIVTVDDCKIVDDGFNAILRATLXFFAVXNXPYYKKVSHQGFLKFLVVR 197

Query: 110 LTSQSDQAIVTLIYHRLLD-------DAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +  +   +V ++    +        +A +    ++   LH          + +  ++  
Sbjct: 198 RSETTGXFLVNIVTSSQIAYDFTAFVEAIKNTGFKIAGVLHTISDSPSDAIKPDSVELLY 257

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
             +Y+ E +      L ++    SF Q N      +    LA    ++   + +LY G G
Sbjct: 258 GLNYIYEEIL----GLKFKISPFSFFQTNTKGAEVLYANALALLSDLEDKTVFDLYSGTG 313

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             + ++A    +V+ +EI   +V AA+ N   N + N + +                   
Sbjct: 314 TIAQIMALKAKKVVGIEIVAEAVAAAKENAKLNGLENCEFIAGDV--------------- 358

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STT 338
           L  ID        I VDPPR G+    +  +  +    ILYISC   SL RDL       
Sbjct: 359 LTQIDNADVGPDVIVVDPPRDGIHRKALEKIINFGVAEILYISCKATSLARDLVAFAEGG 418

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + + +    D F  T H+E  VLL R
Sbjct: 419 YHVAQSLCVDMFAQTYHVETVVLLKR 444


>gi|312796086|ref|YP_004029008.1| 23S rRNA m(5)U 1939 methyltransferase [Burkholderia rhizoxinica HKI
           454]
 gi|312167861|emb|CBW74864.1| 23S rRNA m(5)U 1939 methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 507

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 134/381 (35%), Gaps = 34/381 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + I+R        YR RA   + +    
Sbjct: 142 GCSMQHLDTRAQIAVKQRVLEDNLSHLAKLRAEQIYRPIGGPSWGYRYRARLTVRNVVKK 201

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +     +R ++ QI+     + 
Sbjct: 202 GGVLVGFHEKKSSYVADMTRCEVLPPHVSALLVPLRRLVESL-SIRDRMPQIELAIGDAL 260

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R+L+    +    LR        Q  L  +   +        V+   T+  
Sbjct: 261 TALVL----RVLEPLTEQDEALLRAFADQHGVQFWLQPKGPDSVTPFYPVDVELAYTLPE 316

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   +      + D +L+L+CG GNF+L LAR    V
Sbjct: 317 FDIRMPFKPTDFTQVNHQINRVLVGRAVRLLAPARTDRVLDLFCGLGNFTLPLARRAREV 376

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E +    + A+ N   N +           E   +      F           RF  
Sbjct: 377 VGIEGSDALTQRAQANARVNGL-----------EARTSFAMRNLFEVGAADLRALGRFDK 425

Query: 295 IFVDPPRSGLDDATVGM---------VQAYPHILYISCNPDSLCRDLSIL--STTHTIER 343
             +DPPR G       +               I+Y+SCNP +L RD  +L     + +  
Sbjct: 426 FLIDPPREGALAVAKALGELAQTGDAACLPGRIVYVSCNPATLARDAGLLVHEAGYRLVG 485

Query: 344 LALFDQFPYTRHMECGVLLVR 364
             + + FP+T H+E      R
Sbjct: 486 AGVVNMFPHTSHVESVACFER 506


>gi|195927220|pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
           (Uracil-54, C5)-Methyltransferase In Complex With
           S-Adenosyl-L- Homocysteine
          Length = 425

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 150/378 (39%), Gaps = 57/378 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
             TL    Y+ QL  K  +L++++  F    +++  S     +R R +  I  DG     
Sbjct: 89  GCTLQHLNYDYQLEFKRKKLKRIL-GF---EVEVVPSPKIFGHRNRIDLAITKDG----- 139

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQI 107
           I F ++ K  + + ID            +  +   I  E +           LR  + + 
Sbjct: 140 IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLRE 199

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
              T +     VT   +      + +          +       +   +  +    ++++
Sbjct: 200 GKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYW----SVNRSKSDVSYGDIERF-WGKEFI 254

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
            ERL      + Y    NSF Q N+   V+++  V    +G +  +L++Y G G F + L
Sbjct: 255 RERL----DDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYL 308

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+    V   +  + ++E AR N+  N+V+                    EF    D ++
Sbjct: 309 AKRGFNVKGFDSNEFAIEMARRNVEINNVD-------------------AEFEVASDREV 349

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLA 345
               F T+ VDPPR+GL    V  +       I+Y+SCNP++  RD+ +L   + I+ + 
Sbjct: 350 SVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIV 407

Query: 346 LFDQFPYTRHMECGVLLV 363
             D FP+T H+E    LV
Sbjct: 408 ALDMFPHTPHVELVAKLV 425


>gi|260913270|ref|ZP_05919752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pasteurella dagmatis
           ATCC 43325]
 gi|260632857|gb|EEX51026.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pasteurella dagmatis
           ATCC 43325]
          Length = 436

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 145/359 (40%), Gaps = 30/359 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFH--IWHDGDDLYHIMFDQQTK 68
           Q A K   L Q +   Q     + +   E  HYR R             L      ++++
Sbjct: 100 QRATKQKALLQRLSKLQPDVQLMPMLTGEAWHYRRRVRLSMLFNLKTKKLDIGFRQKKSQ 159

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           + + I +       ++ ++ ++ A +  +     +L  I+ +  + D  I  L+ H  + 
Sbjct: 160 QIVNIQHCNILEPKLSQILPKLTA-LFTQWSTPKQLGHIELV--KVDNGIAMLLRH--IG 214

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +        L +     K  + L  +    ++  +  +           L  +     F 
Sbjct: 215 NLTDNDRTLLLEFALQEKLMLFLQQQDEIIQLSGEAPF------YQIGDLKLQFDIRDFI 268

Query: 189 QPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q NA +N+ M+   L         ++L+L+CG GNF+L L+R    V+ +E  +  V+ A
Sbjct: 269 QVNADLNLKMIATALDWLELNSTDNVLDLFCGMGNFTLPLSRKVKSVIGIEGVQEMVQKA 328

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + N   N   NV+  + +  +            R  D       F  I +DPPR+G   A
Sbjct: 329 QKNAEQNQCANVQFYQTNLDQ------------RFSDQAWAKLPFDKILLDPPRTGAAFA 376

Query: 308 TVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
              + +     ILY+SCNP +L RD  IL+   + + ++A+ D FP+T H+E   L  +
Sbjct: 377 LNALCELGAQKILYVSCNPATLIRDTEILADFGYRLSKVAMIDMFPHTGHLESISLFEK 435


>gi|213971908|ref|ZP_03400008.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato
           T1]
 gi|301384478|ref|ZP_07232896.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. tomato Max13]
 gi|302060512|ref|ZP_07252053.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. tomato K40]
 gi|302132004|ref|ZP_07257994.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213923333|gb|EEB56928.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato
           T1]
          Length = 451

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 140/371 (37%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      ++  + I+        +  +M ++ A I         L  ++  +  S 
Sbjct: 159 KRLDVGFRAAASQHIVSIEECPVLVQALQPIMSQLPA-ILKSFSKPQVLGHVELFSGSS- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L +   L +A       L+        Q+ L G           D +  RL    
Sbjct: 217 -TAVLLRHTAPLAEA---DLATLQAFCKTHGAQLWLHGEGEPQPASPG-DTLGYRLEPWD 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L        + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALHWLAPAADERVMDLFCGLGNFALPLASLAKEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L  +D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQ------------PLTHVDWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD   L    + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|195496369|ref|XP_002095665.1| GE22531 [Drosophila yakuba]
 gi|194181766|gb|EDW95377.1| GE22531 [Drosophila yakuba]
          Length = 615

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 151/422 (35%), Gaps = 64/422 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---------------SEPI--HYRM 45
             L    Y+QQL +K + +  ++  +     ++                   P    YR 
Sbjct: 165 CPLSHIAYDQQLKQKSEEMAALLAKYTQELRKVNPRAKANLDKFQFHGVLPSPTVNGYRN 224

Query: 46  RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97
           + EF +  +             +   + E   +    +    +        +++   +  
Sbjct: 225 KNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRRSKFL 284

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDA------- 141
           P          R  + +    T +    +V  IY   L +D   E    L+         
Sbjct: 285 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQVELKQELKSFYEELAKD 342

Query: 142 ----LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                 +  YQ      A +T   ++       +T   + L +R    +F Q N      
Sbjct: 343 APYKCTSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 402

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +      +   +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN +
Sbjct: 403 LYQKAIDLVAPTEDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 462

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313
            N K    ++ +F ++M RE  +++     +         VDPPR+GL   ++  ++   
Sbjct: 463 KNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 518

Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           A   ++Y+SCNP S  R+   L               +     D FP+T H E  +L  R
Sbjct: 519 AVNRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578

Query: 365 KP 366
           +P
Sbjct: 579 EP 580


>gi|319896666|ref|YP_004134859.1| 23S rRNA (uracil-5-)-methyltransferase ruma [Haemophilus influenzae
           F3031]
 gi|317432168|emb|CBY80519.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           F3031]
          Length = 438

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 85/364 (23%), Positives = 152/364 (41%), Gaps = 32/364 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W + +     M  +Q
Sbjct: 98  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIEMGFRQ 156

Query: 67  TK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
               + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 157 KNANDLIPVQSCEVVEPAINHLLPKLTALLEQFSAPK-QLGHIELVAADNGVAML-LRYT 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  ++++    ++++Y D         +      
Sbjct: 215 KKLAEIDRTLLLKF-----AEQEKLMLFLQSDEG---IEQNYGDAPYYQFSDGIKLHFDI 266

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L LA+     + +E     
Sbjct: 267 RDFIQVNRVLNERMVNTALDWLELNQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEM 326

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+ A  N   N + N++  +       Q+   +   N+          F  I +DPPRSG
Sbjct: 327 VQKAAQNAERNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSG 374

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVL 361
              A   + +     ILY+SCNP +L RD  IL    + IE+ A+ D FP+T H+E   L
Sbjct: 375 AAFALNALCELKAEKILYVSCNPATLVRDAGILCDFGYKIEKSAVIDMFPHTGHLESITL 434

Query: 362 LVRK 365
              K
Sbjct: 435 FTTK 438


>gi|284929759|ref|YP_003422281.1| 23S rRNA m(5)U-1939 methyltransferase [cyanobacterium UCYN-A]
 gi|284810203|gb|ADB95900.1| 23S rRNA m(5)U-1939 methyltransferase [cyanobacterium UCYN-A]
          Length = 448

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 145/367 (39%), Gaps = 45/367 (12%)

Query: 11  EQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDG-DDLYHIMFD 64
           E QL  K +++ Q +              +  S+   YR +A + + +    ++    + 
Sbjct: 90  EYQLYIKQNKIIQSLQRIGRFKDVFVLPILSSSQIFGYRNKATYPLGYSKFGNVNAGYYQ 149

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQ 113
           + + + + ++        +N+ + E+   I  +             LR    +I   + +
Sbjct: 150 RYSHKLINLNQCPIQDSRLNSFLAEIKVDIEKQGWSIYNEKTYQGHLRHLALRIGQNSGE 209

Query: 114 SDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
               +++   +    +     W E    L   L  +  +       N+T   + + ++ E
Sbjct: 210 VLLTLISTTGNITKIKEQAKLWLERYPNLVGVLVNKNSEKNNKIFGNQTFSIVGKPFLKE 269

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           R       + ++   ++F Q NA     +L  +L        + +++ YCG G F+L LA
Sbjct: 270 RF----FNIDFKLRPDTFFQVNAQSAETLLHSLLDNLILTGKEKIVDAYCGIGTFTLPLA 325

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +     + +EI+  S+E A+ N   N++NNV+  + + K+    +               
Sbjct: 326 KRISHAIGIEISHDSIEQAKANAELNNINNVEFYQGAVKDILPTLN-------------- 371

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS--TTHTIERL 344
                 + +DPPR G DD+ +  ++    P I+YISC P +L RDL  +     + I  +
Sbjct: 372 -IFPDIVLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLARDLKKICYQNLYKILWV 430

Query: 345 ALFDQFP 351
              D FP
Sbjct: 431 QPVDFFP 437


>gi|317049303|ref|YP_004116951.1| TrmA family RNA methyltransferase [Pantoea sp. At-9b]
 gi|316950920|gb|ADU70395.1| RNA methyltransferase, TrmA family [Pantoea sp. At-9b]
          Length = 438

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 76/356 (21%), Positives = 143/356 (40%), Gaps = 30/356 (8%)

Query: 17  KVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERM 71
           K   L +M+       +   +I       YR RA   +          M  ++  + + +
Sbjct: 104 KAQALARMLSRDAPLPVRVDEIISGHAWGYRRRARLGLQWQPKQQRLQMGFRKAASNDLV 163

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            +      +  + AL++ +   +     ++ +L  ++ + + +   +V     R LD   
Sbjct: 164 ELTQCPILAPELEALLLPLHRCLSDLNTVK-RLGHVELVLADNGPLMVL----RHLDALS 218

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
            +   +L    H     + L   ++     L  D    R       L        F Q N
Sbjct: 219 ADDRAKLERFSHEHDVMLYLADGSDDL-TALQSDTPFYR----SFDLQLTFSPQDFIQVN 273

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
            G+N  M+   +        D +L+L+CG GNF+L + +  +  + VE     V  A YN
Sbjct: 274 DGVNQQMVAKAIDWLDLQPEDRVLDLFCGMGNFTLPIGKFVENAVGVEGVAALVRQAAYN 333

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N++ NV+  + + +E             +      +  F  + +DP R+G       
Sbjct: 334 ADLNNLKNVRFFQHNLEE------------DVARQPWAAQGFNKVLLDPARAGAAGVMSH 381

Query: 311 MVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +V+  P  ++Y+SCNP +L RD   +LS  + +ER+A+ D FP+T H+E  VL  +
Sbjct: 382 IVKLAPQRVVYVSCNPTTLARDSQTLLSAGYHLERVAMLDMFPHTSHLESMVLFSK 437


>gi|149922893|ref|ZP_01911315.1| RNA methyltransferase, TrmA family protein [Plesiocystis pacifica
           SIR-1]
 gi|149816281|gb|EDM75786.1| RNA methyltransferase, TrmA family protein [Plesiocystis pacifica
           SIR-1]
          Length = 466

 Score =  212 bits (541), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 94/390 (24%), Positives = 152/390 (38%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHI-WHDGDD 57
             +L+    ++Q+A K   L        +     L+  R+EP  YR RA     W  G D
Sbjct: 91  GCSLMHLDPDEQVALKQRWLASDFEGHGLAPERWLEPLRAEPWAYRRRARLGAKWVAGKD 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLIN-----ALMIEMMATIRLEPLLRAKLFQIDYLTS 112
              + F +Q K  +     + G  ++      AL+ ++   I     L  K+ Q++   +
Sbjct: 151 KVVVGFREQDKRFI---ANLEGCEVLAGRHGGALIPKLSELIAGL-SLATKIPQVEVSVA 206

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDER 170
                 VT +  R+L+    E   RLR    A   ++ L  +   T      +R   +  
Sbjct: 207 DDTDGAVTALVFRVLEPPTDEDRERLRAFAAAEGLRVFLQSKGLDTVALFADERGQTEGE 266

Query: 171 LTVAGRTLIY---------RQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGN 220
                R L Y         R     F Q NA IN  M+   +       +  +L+L+CG 
Sbjct: 267 GFEDARELSYALPEFELDLRFRPTDFVQVNAAINRSMIARAVELLALEPEHRVLDLFCGL 326

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNFSL LAR    V  VE     V  A  N   N ++N +       E      +  E  
Sbjct: 327 GNFSLALARRAGAVFGVEGDAGLVARAAANAERNGLSNARF------EVRDLYTQVGELE 380

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM----VQAYPHILYISCNPDSLCRDLSIL- 335
            L    +       + +DPPRSG       +        P ++Y++C+P++L RD ++L 
Sbjct: 381 WLGGQPV-----DRVLLDPPRSGALAIVEHIDRIAWAGKPRLVYVACSPETLARDAAVLV 435

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  + +    + D FP+T H+E   L  R
Sbjct: 436 GTHGYRLSAAGVMDMFPHTAHVESIALFER 465


>gi|209522218|ref|ZP_03270855.1| RNA methyltransferase, TrmA family [Burkholderia sp. H160]
 gi|209497347|gb|EDZ97565.1| RNA methyltransferase, TrmA family [Burkholderia sp. H160]
          Length = 476

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 138/382 (36%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + +FR        YR RA   + +  + 
Sbjct: 112 GCSMQHLDMRAQVAVKQRVLEDNLQHLAKLRPETVFRPIHGPSWGYRYRARLAVRYLPER 171

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +R   +   ++ QI+     S 
Sbjct: 172 GGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIY-DRMPQIELAVGSSV 230

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R L+    E    LR+     K Q  +      T   L      +D  L  
Sbjct: 231 TALVV----RNLEPLTAEDEQVLREFADEHKVQFWIQPGGPDTVTPLYPLDVQLDYTLPE 286

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 287 YGIRMPFK--PTDFTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISR 344

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++   + A  N   N V               +      F    D       F
Sbjct: 345 EVVGIEGSEVLTQRALANAELNGVAGHT-----------SFASRNLFEVTADDLRALGHF 393

Query: 293 KTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIE 342
               VDPPR G       + +            I+Y+SC P +L RD  +L     + + 
Sbjct: 394 DKFLVDPPREGALAIAKALAEIAQSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLV 453

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
              + + FP+T H+E   L  R
Sbjct: 454 GAGVVNMFPHTSHVESIALFER 475


>gi|24666579|ref|NP_649083.2| CG3808 [Drosophila melanogaster]
 gi|23093152|gb|AAF49200.3| CG3808 [Drosophila melanogaster]
          Length = 615

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 155/422 (36%), Gaps = 64/422 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45
             L    Y+QQ+ +K + +  ++  +            P+L      ++  S  +  YR 
Sbjct: 165 CPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRN 224

Query: 46  RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97
           + EF +  +             +   + E   +    +    +        +++   +  
Sbjct: 225 KNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 284

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDA------- 141
           P          R  + +    T +    +V  IY   L +D   E    L+         
Sbjct: 285 PFNPDGNIGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQVELKQELKSFYEDLAND 342

Query: 142 ----LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                 +  YQ      A +T   ++       +T   + L +R    +F Q N      
Sbjct: 343 APYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 402

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +      +   +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN +
Sbjct: 403 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 462

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313
            N K    ++ +F ++M RE  +++     +         VDPPR+GL   ++  ++   
Sbjct: 463 KNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 518

Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           A   ++Y+SCNP S  R+   L               +     D FP+T H E  +L  R
Sbjct: 519 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578

Query: 365 KP 366
           +P
Sbjct: 579 EP 580


>gi|201065699|gb|ACH92259.1| FI05218p [Drosophila melanogaster]
          Length = 640

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 155/422 (36%), Gaps = 64/422 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45
             L    Y+QQ+ +K + +  ++  +            P+L      ++  S  +  YR 
Sbjct: 190 CPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRN 249

Query: 46  RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97
           + EF +  +             +   + E   +    +    +        +++   +  
Sbjct: 250 KNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 309

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDA------- 141
           P          R  + +    T +    +V  IY   L +D   E    L+         
Sbjct: 310 PFNPDGNIGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQVELKQELKSFYEDLAND 367

Query: 142 ----LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                 +  YQ      A +T   ++       +T   + L +R    +F Q N      
Sbjct: 368 APYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 427

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +      +   +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN +
Sbjct: 428 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 487

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313
            N K    ++ +F ++M RE  +++     +         VDPPR+GL   ++  ++   
Sbjct: 488 KNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 543

Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           A   ++Y+SCNP S  R+   L               +     D FP+T H E  +L  R
Sbjct: 544 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 603

Query: 365 KP 366
           +P
Sbjct: 604 EP 605


>gi|330877092|gb|EGH11241.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 451

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 141/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I+        +  +M ++ A ++        L  ++  +  S 
Sbjct: 159 KRLDVGFRAAASQDIVSIEECPVLVQALQPIMSQLPAMLKSFSK-PQVLGHVELFSGSS- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L +   L +A       L+        Q+ L G           D +  RL    
Sbjct: 217 -TAVLLRHTAPLAEA---DLATLQAFCATHGAQLWLHGEGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L        + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALHWLAPAADERVMDLFCGLGNFALPLASLAKEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAINAMSNDLHNVRFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD   L    + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|332977504|gb|EGK14277.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter sp.
           1501(2011)]
          Length = 517

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 147/393 (37%), Gaps = 44/393 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPN-LQIFRSEPIHYRMRAEFHIWH--DG 55
             +L   Q + Q+A K   L +++      Q  N L    ++ + YR +A   + +    
Sbjct: 135 GCSLQHWQPDGQIAFKQTVLAELLQHQADVQPDNWLPPVVADRLGYRTKARMGVRYVAKK 194

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ-- 113
           D       ++ +     ++        I    IE +  +      R+ + QI+    +  
Sbjct: 195 DTALVGFRERNSNFLAELNECHILDERI-GFEIENLKALISSLEARSHIAQIELAMGEAI 253

Query: 114 ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICL-DRDY 166
                 +  V LI  R L+        +L+    AR +Q+ L  +  ++   I L D D 
Sbjct: 254 PELADGEQPVALIL-RNLEPLSESDIEKLKTFFKARSWQLYLQSKGPESIEHIALHDTDN 312

Query: 167 VDERLT-----VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
           + E+       +    L Y  I   FTQ N  +N  M +          G+ +L+L+ G 
Sbjct: 313 LTEQFGRLYYQLPEFDLTYEFIPTDFTQVNLSVNRKMTKLACDLLDLKPGERVLDLFSGL 372

Query: 221 GNFSLVLARHFDR-------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           GNFSL LAR            + VE +      A  N   N + N +      ++ TQ  
Sbjct: 373 GNFSLPLARLVGGEDGSQGLAIGVEGSDAMTARAADNAKRNGITNTEFYN---QDLTQDF 429

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL 332
                     D       F  I +DPPRSG  +    + +     I+Y+SCNP +L RD 
Sbjct: 430 S---------DQSWAQQGFDAILIDPPRSGAWEVMQYLPRFNASRIVYVSCNPATLARDT 480

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             L    + +    + D F +T H+E      +
Sbjct: 481 KALIEQGYRLTDAGVMDMFCHTGHVESIARFEK 513


>gi|325526959|gb|EGD04415.1| 23S rRNA m(5)U1939 methyltransferase [Burkholderia sp. TJI49]
          Length = 454

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 136/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +   S        YR RA   + +    
Sbjct: 90  GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETMYSPIHGPSWGYRYRARLTVRNVVKK 149

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 150 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 208

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  D   E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 209 TALVLRVLEPINAD--DEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEFG 266

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 267 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPARDDRVLDLFCGIGNFTLPLARLAREV 324

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+                     F    D       F  
Sbjct: 325 MGIEGSEALTTRALANARENGVDGHTTFAC-----------RNLFEVTADDIRALGAFDK 373

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 374 FLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 433

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 434 GVVNMFPNTSHVESIALFER 453


>gi|16769886|gb|AAL29162.1| SD08036p [Drosophila melanogaster]
          Length = 615

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 79/422 (18%), Positives = 155/422 (36%), Gaps = 64/422 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45
             L    Y+QQ+ +K + +  ++  +            P+L      ++  S  +  YR 
Sbjct: 165 CPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRN 224

Query: 46  RAEFHIWHDGDD-----LYHIMFDQQTKERMRI---DYFMPGSLLINALMIEMMATIRLE 97
           + EF +  +             +   + E   +    +    +        +++   +  
Sbjct: 225 KNEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFL 284

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDA------- 141
           P          R  + +    T +    +V  IY   L +D   E    L+         
Sbjct: 285 PFNPDGNIGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQVELKQELKSFYEDLAKD 342

Query: 142 ----LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                 +  YQ      A +T   ++       +T   + L +R    +F Q N      
Sbjct: 343 APYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 402

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +      +   +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN +
Sbjct: 403 LYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 462

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313
            N K    ++ +F ++M RE  +++     +         VDPPR+GL   ++  ++   
Sbjct: 463 KNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 518

Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           A   ++Y+SCNP S  R+   L               +     D FP+T H E  +L  R
Sbjct: 519 AINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578

Query: 365 KP 366
           +P
Sbjct: 579 EP 580


>gi|71734365|ref|YP_275859.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|91207807|sp|Q48FH7|RUMA_PSE14 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|71554918|gb|AAZ34129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 451

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 146/371 (39%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQA-LGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G      +    D +  RL    
Sbjct: 215 --VATAVLLRHTAPLAEADLALLQAFCSKHGAQLWLHGEGEPQPVSPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAREV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F T
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFST 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|116329018|ref|YP_798738.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116121762|gb|ABJ79805.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 393

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 136/396 (34%), Gaps = 52/396 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHD--GDD 57
               L   YE+QL  K + + +  + FQ       I   +   YR + +    H   G  
Sbjct: 17  GCDRLHISYEKQLQHKQEGVEKRFVGFQELEIRPIIKSPKEQMYRHKVQLPFGHRKIGKK 76

Query: 58  LYHIMFDQQTKERMRIDY--FMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104
               +     +    ID          +  +   +    R E            LLR  +
Sbjct: 77  TVLTLGLHNKENVYIIDQKECRIQDADLTTVAAAIRHWARTENVIPYNEKNGSGLLRHIV 136

Query: 105 FQIDYLTSQSDQAIVTLIYH----RLLDDAWRECAIRL----------RDALHARKYQIQ 150
            +    + +    IVT        + L D       +              L     +  
Sbjct: 137 LRKANASQEILVGIVTNATEIPGRKKLADRLHSYIQQFLCNEKSKAEVVGILQNVNQRNT 196

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
            +    K      R +V E++      L ++   ++F Q N     ++ + VL       
Sbjct: 197 KVVLGEKETTWYGRHFVKEKIG----DLDFQIGLSTFFQVNPFQIKNLYDLVLQE-LPSD 251

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            ++++ YCG G  SL +A    +V+ +E    S+ +A     AN + NV   +       
Sbjct: 252 SNVVDAYCGIGTISLYVASKSKKVVGLEENPNSIRSAVGAAKANGIVNVAFTKGKVLRTL 311

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
           Q    E              +   + +DPPR GLD  T  ++       ILY+SCNP++L
Sbjct: 312 QVALNE--------------KSDVVILDPPREGLDPETKKILLNSKIHKILYVSCNPETL 357

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD   L+      ++   D FP+T H+E   +  R
Sbjct: 358 LRDAVALTKVFKYTKMTPVDLFPHTSHLESVSVFTR 393


>gi|330966580|gb|EGH66840.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 451

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 141/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I+        +  +M ++ A ++        L  ++  +  S 
Sbjct: 159 KRLDVGFRAAASQDIVSIEECPVLVQALQPIMSQLPAMLKSFSK-PQVLGHVELFSGSS- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L +   L +A       L+        Q+ L G           D +  RL    
Sbjct: 217 -TAVLLRHTAPLAEA---DLATLQAFCATHGAQLWLHGEGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L        + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALHWLAPAADERVMDLFCGLGNFALPLASLAKEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD   L    + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|93005208|ref|YP_579645.1| 23S rRNA 5-methyluridine methyltransferase [Psychrobacter
           cryohalolentis K5]
 gi|122415956|sp|Q1QDU2|RUMA_PSYCK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|92392886|gb|ABE74161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter
           cryohalolentis K5]
          Length = 513

 Score =  212 bits (540), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 143/388 (36%), Gaps = 38/388 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWH--DG 55
              L   Q + Q+  K   L +M++          L+    + + YR +A   + +    
Sbjct: 136 GCNLQHWQPDAQITFKQSVLAEMLVHQANVAPDHWLEPVVGDRLGYRTKARLGVRYVVKK 195

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           +       ++ +     ++        I    IE + T+      R K+ Q++    +  
Sbjct: 196 ETALVGFRERSSNFLAELNECHILDPRI-GFEIENLKTLISTLDSRDKIAQLELAMGEHL 254

Query: 116 QAIV-----TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--TKICL-DRDYV 167
             +        +  R L+        +L+    AR +Q+ L  +      +I L D D +
Sbjct: 255 PELPDGDQPVALIVRNLEPLSDGDIDKLKVFFAARNWQLYLQSKGADSIQRIALRDTDDL 314

Query: 168 DERLT-----VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            E+       +    L +  I   FTQ N  +N  M +          G+ +L+L+ G G
Sbjct: 315 SEQFGRLYYQLPEYDLTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLG 374

Query: 222 NFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           NFSL LAR       V+ VE ++     A  N   N +NN +                  
Sbjct: 375 NFSLPLARLVGETGSVVGVEGSEAMTARAADNARRNGINNTEFYSQDLTH---------- 424

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLS-ILS 336
                D    +  F  + +DPPRSG  +    + +     I+Y+SCNP +L RD   +L 
Sbjct: 425 --DCTDKPWANQGFDALLIDPPRSGAWEIMQYLPKFNAERIVYVSCNPATLARDTKALLE 482

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + +    + D F +T H+E      +
Sbjct: 483 QGYRLTHAGVMDMFCHTGHVESIARFEK 510


>gi|14521283|ref|NP_126758.1| putative RNA methyltransferase [Pyrococcus abyssi GE5]
 gi|50401701|sp|Q9UZR7|Y1078_PYRAB RecName: Full=Uncharacterized RNA methyltransferase PYRAB10780
 gi|5458501|emb|CAB49989.1| RNA methyltransferase, putative [Pyrococcus abyssi GE5]
          Length = 405

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 150/378 (39%), Gaps = 57/378 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
             TL    Y+ QL  K  +L++++  F    +++  S     +R R +  I  DG     
Sbjct: 69  GCTLQHLNYDYQLEFKRKKLKRIL-GF---EVEVVPSPKIFGHRNRIDLAITKDG----- 119

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQI 107
           I F ++ K  + + ID            +  +   I  E +           LR  + + 
Sbjct: 120 IGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLRE 179

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
              T +     VT   +      + +          +       +   +  +    ++++
Sbjct: 180 GKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYW----SVNRSKSDVSYGDIERF-WGKEFI 234

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
            ERL      + Y    NSF Q N+   V+++  V    +G +  +L++Y G G F + L
Sbjct: 235 RERL----DDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYL 288

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+    V   +  + ++E AR N+  N+V+                    EF    D ++
Sbjct: 289 AKRGFNVKGFDSNEFAIEMARRNVEINNVD-------------------AEFEVASDREV 329

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLA 345
               F T+ VDPPR+GL    V  +       I+Y+SCNP++  RD+ +L   + I+ + 
Sbjct: 330 SVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIV 387

Query: 346 LFDQFPYTRHMECGVLLV 363
             D FP+T H+E    LV
Sbjct: 388 ALDMFPHTPHVELVAKLV 405


>gi|195479026|ref|XP_002086546.1| GE22791 [Drosophila yakuba]
 gi|194186336|gb|EDW99947.1| GE22791 [Drosophila yakuba]
          Length = 615

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 151/422 (35%), Gaps = 64/422 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---------------SEPI--HYRM 45
             L    Y+QQL +K + +  ++  +     ++                   P    YR 
Sbjct: 165 CPLSHIAYDQQLKQKSEEMAALLAKYTQELRKVNPRAKANLDKFQFHGVLPSPTVNGYRN 224

Query: 46  RAEFHIWHDGDD-----LYHIMFDQQTKERMRID---YFMPGSLLINALMIEMMATIRLE 97
           + EF +  +             +   + E   ++   +    +        +++   +  
Sbjct: 225 KNEFTVGKNSAGEVVVGFRLGCYSDGSVEVAEVEDLPHLPEQAKWAARSFQDLVRRSKFL 284

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDA------- 141
           P          R  + +    T +    +V  IY   L  D   E    L+         
Sbjct: 285 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSGDEQVELKQELKFFYEELAKD 342

Query: 142 ----LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                 +  YQ      A +T   ++       +T   + L +R    +F Q N      
Sbjct: 343 APYKCTSLYYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGANV 402

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +      +   +L++ CG G  +L  A+H  +V+ VEI   +++ A +N  AN +
Sbjct: 403 LYQKAIDLVAPTEDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGI 462

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--- 313
            N K    ++ +F ++M RE  +++     +         VDPPR+GL   ++  ++   
Sbjct: 463 KNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIRSAD 518

Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           A   ++Y+SCNP S  R+   L               +     D FP+T H E  +L  R
Sbjct: 519 AVNRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVILFER 578

Query: 365 KP 366
           +P
Sbjct: 579 EP 580


>gi|324112659|gb|EGC06635.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia fergusonii
           B253]
          Length = 375

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 139/373 (37%), Gaps = 39/373 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
            +QL+ K   L+ ++  F V    +        +R +A+  +    +     M  +    
Sbjct: 22  PEQLSAKTADLKNLLADFSVEEWCEPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTP 81

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQSDQAIVTLIY 123
           ++      +      + A +   +A   L P      R +L  I    SQSD  ++    
Sbjct: 82  EDLCDCPLYPSSFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFV 141

Query: 124 HR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA 174
            R       L  A      +L   L      IQ I  A    +T+I L      + L   
Sbjct: 142 LRSDTKLAQLRKALPWLQAQLPQ-LKVITVNIQPIHMAIMEGETEIYLTE---QQALAER 197

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
              +       SF Q N  +   +        + +    + +L+CG G F L  A    +
Sbjct: 198 FNDVPLWIRPQSFFQTNPAVASQLYATARDWVQQLPVKHMWDLFCGVGGFGLHCATPDMQ 257

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +  +EIA  ++  A+ + A   +  ++   + S +F  A                    +
Sbjct: 258 LTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA---------------QGEVPE 302

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+       +    P  I+Y SCN  ++ +D+  LS  + IER+ LFD FP
Sbjct: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELS-GYRIERVQLFDMFP 361

Query: 352 YTRHMECGVLLVR 364
           +T H E   LLV+
Sbjct: 362 HTAHYEVLTLLVK 374


>gi|17545928|ref|NP_519330.1| 23S rRNA 5-methyluridine methyltransferase [Ralstonia solanacearum
           GMI1000]
 gi|20140047|sp|Q8Y035|RUMA_RALSO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|17428223|emb|CAD14911.1| probable rna methyltransferase protein [Ralstonia solanacearum
           GMI1000]
          Length = 450

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 135/383 (35%), Gaps = 36/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +         +           YR RA   + H    
Sbjct: 83  GCSMQHLDSRAQIAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAK 142

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +    ++  ++ QI+    Q  
Sbjct: 143 GGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIEVAVGQDV 201

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  I   L      E  +R     HA ++ +Q  G             +   L   G
Sbjct: 202 TALVLRILEPLTSA--DEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPEFG 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
            T+ ++     FTQ N  IN  ++   L       GD LL+L+CG GNF+L +A     V
Sbjct: 260 ITMPFK--PTDFTQVNHQINRVLMSRALKLLDARPGDRLLDLFCGIGNFTLPMATRGCEV 317

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N ++                     F    D      RF  
Sbjct: 318 MGIEGSEALTTRALANAQHNGLDGKTTFAC-----------RNLFEVSADDIAALGRFDR 366

Query: 295 IFVDPPRSGL---DDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTI 341
             VDPPR G      A   + Q            I+Y+SCNP +L RD  +L     + +
Sbjct: 367 WLVDPPREGALAVSKAVAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYRL 426

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + + FP+T H+E   +  R
Sbjct: 427 AGAGVVNMFPHTSHVESIAVFER 449


>gi|255507354|ref|ZP_05382993.1| rRNA methyltransferase [Chlamydia trachomatis D(s)2923]
 gi|289525786|emb|CBJ15267.1| rRNA methyltransferase [Chlamydia trachomatis Sweden2]
 gi|296435362|gb|ADH17540.1| rRNA methyltransferase [Chlamydia trachomatis E/150]
 gi|296439079|gb|ADH21232.1| rRNA methyltransferase [Chlamydia trachomatis E/11023]
          Length = 396

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 150/394 (38%), Gaps = 46/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55
             +    +Y   L  K   L  +     +P+  I      S  +  R + EF  +   DG
Sbjct: 16  GCSSPQMEYASSLKTKELALHNLFAPL-IPSQNILPVIPCSPLLRGRNKMEFSFYQTVDG 74

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQI 107
           +     +   + K+ + I   +        ++    +     P        L +  L  I
Sbjct: 75  EKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLNKGSLCTI 134

Query: 108 DYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------- 157
                   +D  I+     R             + +L      I  I    K        
Sbjct: 135 TVRVGNISNDFMIILTTSGREEFAVPLNIIQEWQQSLLDSGLPITSIFWEEKLSARNSPT 194

Query: 158 ---TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDL 213
              T       ++ ++L++ GR+ ++     SF QP +     +++ +        +  L
Sbjct: 195 TFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIKEFIDPCGEETL 254

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LYCG G   ++LA +  +++ VE+   +V +A+ NI  N V+ +++    +K+F +  
Sbjct: 255 LDLYCGAGTIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVD-MEVFLEDAKQFCKRN 313

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
                                + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++
Sbjct: 314 ENLP-------------SPDIVVIDPPRCGMQNKALKYLLRMAPKKIVYVSCNPLTQIQE 360

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            S+L    + + R+   DQFP+T H+E  VLL R
Sbjct: 361 CSVLVEQGYQLRRMQPIDQFPHTNHLENIVLLER 394


>gi|37524901|ref|NP_928245.1| 23S rRNA 5-methyluridine methyltransferase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|50401496|sp|Q7N839|RUMA_PHOLL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|36784327|emb|CAE13204.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 438

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 141/360 (39%), Gaps = 29/360 (8%)

Query: 13  QLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHD-GDDLYHIMFDQ-QT 67
           Q   K   L  ++       V    +       YR RA   + +        I F Q Q+
Sbjct: 100 QRESKASVLEHLIRRETGVTVSAKPVILGPEYGYRRRARLGLHYQIKQRQLVIGFRQNQS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            E + I         +  L+  +   +     ++ +L  ++ + + +   ++     R L
Sbjct: 160 NELVAIKECPVLRPELEQLLQPLSQCLNSLKAVK-RLGHVELVLADNGPLMIL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D   RE   +L     + ++ + +   A++T +    +  +    V G  L++      F
Sbjct: 215 DPLKREDKEKLGTF--SVQHNVAVYLAADETSLESLNELPEPWYQVDGLKLVF--SPRDF 270

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   +        D +L+L+CG GNF+L + R    V+ VE     V  
Sbjct: 271 IQVNDQVNQQMVAQAIEWLDLQPNDNVLDLFCGMGNFTLPIGRIVQSVVGVEGVATLVAN 330

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            +YN   N+++N+     + +              +         F  + +DP R+G   
Sbjct: 331 GQYNAKINNLDNISFCHENLEA------------DIHHQPWAKLGFNKVLLDPARAGAVG 378

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               +V+  P  ++Y+SCNP +L RD   +L   + I  + + D FP+T H+E   L  R
Sbjct: 379 VMSHIVELVPEKVVYVSCNPTTLARDSKILLEAGYQIISVRMLDMFPHTGHLESMALFSR 438


>gi|104780552|ref|YP_607050.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas entomophila
           L48]
 gi|143581542|sp|Q1IDL9|RUMA_PSEE4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|95109539|emb|CAK14240.1| 23S rRNA m5U1939 methyltransferase RumA [Pseudomonas entomophila
           L48]
          Length = 452

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 143/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
              L    ++ QLA K   L + +        + +          YR RA   +  D   
Sbjct: 101 GCNLQHLPHDGQLALKQRLLAEQLQRVAGVQPEEWAAPLCGPEFGYRRRARVAVRWDVKQ 160

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                    + +++ + ID        + A+M  +   +R        L  ++  +  ++
Sbjct: 161 RQLDVGFRAEASQDIVAIDDCPVLVQPLQAIMRHLPTVLRSLSK-PQTLGHVELFSGTAE 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +V  +     +D       RL         Q+ L G  +   +   +      L   G
Sbjct: 220 AVLVRHVAALPAED-----LARLEAFCREAGAQLWLQGEGDPAPVDAAQRLGF-ALEPWG 273

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M++  LA       + +L+L+CG GNF+L LAR    V
Sbjct: 274 MELAWR--PGDFVQVNAQVNTLMIQQALAWLAPQAHERVLDLFCGLGNFALPLARQAREV 331

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  VE A  N   N+V N +  +    +             L   +  +  F  
Sbjct: 332 VAVEGVQAMVERAEANAHGNNVYNARFFQADLSQ------------PLAGAEWVAEGFSA 379

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP 
Sbjct: 380 VLLDPPRDGAYEVVQGIARLGAKRLVYVSCNPATLARDTQVLVGQGYRLKRAGILDMFPQ 439

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 440 TAHVEAMALFE 450


>gi|315127392|ref|YP_004069395.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification
           at position U1939, SAM-dependent [Pseudoalteromonas sp.
           SM9913]
 gi|315015906|gb|ADT69244.1| 23S rRNA (uracil-5)-methyltransferase, responsible for modification
           at position U1939, SAM-dependent [Pseudoalteromonas sp.
           SM9913]
          Length = 441

 Score =  212 bits (539), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 151/375 (40%), Gaps = 33/375 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDG-- 55
              L      QQ+ EK   + Q+   F     +       S+  HYR  A   +  D   
Sbjct: 89  GCQLQHLDATQQVVEKQAAVNQLFAKFAKLTDLNWQTPLLSQATHYRRSARIAVMFDKAA 148

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +      + +K  + I++    S +   +       I     L +       L +  +
Sbjct: 149 KKMRVGYRARGSKSIVSINHCPVLSDVFAEVFNVFDNIINHNKALHS--ISHLQLCAADE 206

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV-DERLTVA 174
           Q  + + + + +    +    +   A H      QL+ +++   I  D  ++      + 
Sbjct: 207 QHFIVIRHTKAISPTDKAFVEQSVSAYH-----WQLVWQSDSDTI--DHAHLAMPFYKLD 259

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD 232
              + +    N+F Q NA +N  ML   ++    +QGD  +L+L+CG GNFSLVLA+   
Sbjct: 260 QLDIKFEFGLNNFIQVNASVNQAMLIQAVS-WLALQGDENVLDLFCGIGNFSLVLAKQAK 318

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V  +E    +V  A  N   N + N +         T ++++   FN+           
Sbjct: 319 TVTGIEGVTSAVALATQNAHTNSITNTQFHCFD---LTTSIKKAPWFNK---------EL 366

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350
             + +DP R+G       + +  +  ILY+SC+P +L RD +I+S     + ++ L + F
Sbjct: 367 DILVLDPSRTGAMAVLEQLPLTQFKAILYVSCDPVTLARDSAIISQAGFELNKIGLMNMF 426

Query: 351 PYTRHMECGVLLVRK 365
           P+T H+E   L  R+
Sbjct: 427 PHTGHIETMALFQRR 441


>gi|162447371|ref|YP_001620503.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985478|gb|ABX81127.1| RNA methyltransferase, TrmA family [Acholeplasma laidlawii PG-8A]
          Length = 451

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 70/387 (18%), Positives = 149/387 (38%), Gaps = 41/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF------QVPNLQIFRSEPIHYRMRAEFHIWHDG 55
              +    Y   L +K D +++ +  +       + +  I    P +YR +A   +    
Sbjct: 83  GCQVQHFDYNAMLNQKKDIIKKALDRYVKRYDAHIISDTIGMDNPKNYRNKASLPLRLID 142

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKL 104
           +     MF + +   + I+        IN +            I+    +    ++   +
Sbjct: 143 NKNRFGMFARNSNAFVPINTCGVQHTKINDIFTTMTSLMDRYHIDAYDPVLQTGIISHAI 202

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKIC 161
            +I    ++     +       LD+   E      + +   K     + ++       + 
Sbjct: 203 VRITENLNEVQVTFILSKAFDGLDNLVHELVKLHPEIMSIYKVINPDVRQSYFTEDIHLI 262

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ ++E+L        +    ++F Q N         E    A       +++ Y G 
Sbjct: 263 YGKEMIEEQLG----GHTFSLSPDAFFQLNTSQADKFYNEMKRLAQIKPTEIVVDAYAGI 318

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              S  + +    + A+EI + +V++A+ ++  NH++NV ++  + ++           +
Sbjct: 319 APISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDNVTVIENNFED---------ALD 369

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT 338
            LKDI     +   +  DPPRSGL +  +  +  Y    ++Y SCNP +L +DLS+L   
Sbjct: 370 NLKDI-----KIDVMLFDPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAKDLSLLLED 424

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + ++ +   D FPYT  +E   LL  K
Sbjct: 425 YDLKHITPIDMFPYTSLVESITLLELK 451


>gi|74316988|ref|YP_314728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thiobacillus
           denitrificans ATCC 25259]
 gi|91207814|sp|Q3SK67|RUMA_THIDA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|74056483|gb|AAZ96923.1| 23S rRNA methyltransferase/RumA [Thiobacillus denitrificans ATCC
           25259]
          Length = 432

 Score =  212 bits (539), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 139/375 (37%), Gaps = 29/375 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
             ++   +   Q+A K   L + +         +           YR RA   +      
Sbjct: 75  GCSMQHLEPSAQVAAKQRVLEENLARIGKVRPSVLLPALHGPSWGYRGRARLSVRRVEKK 134

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +      +  ++AL+  +   I        ++ QI+    +  
Sbjct: 135 GGVLVGFHEKRSSFIADMASCEVLAPGVSALIQPLRELIGRL-SNADRIPQIEVAAGE-- 191

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-RLTVA 174
              V ++  RLL+    + A  +R    A   Q+    +  +T      D   E    + 
Sbjct: 192 --HVIVLVFRLLEPWNDDDAAHVRAFADAHHVQVWEQRKGPETARPFWPDIAPELSYGLP 249

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              L+       FTQ N+ IN  ++   L       G+ + +L+CG GNF+L +A     
Sbjct: 250 EFGLVMPFRPTEFTQVNSAINRALVSRALRLLDPRPGERIADLFCGLGNFTLPIAHRGAD 309

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           VL +E +   V  AR N   N + + +    +             F    +       F 
Sbjct: 310 VLGIEGSTELVARARENALRNALPHARFEVDN------------LFEMTPEKFAALGPFD 357

Query: 294 TIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQ 349
            + +DPPRSG  +    +    A   I+Y+SC+P +L RD  +L     + +E   + + 
Sbjct: 358 KLLIDPPRSGAIEVVKSLPEAGAPRRIVYVSCDPATLARDAEVLVHVKGYRLEAAGVANM 417

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E   L  R
Sbjct: 418 FPHTAHVESIALFER 432


>gi|291614756|ref|YP_003524913.1| RNA methyltransferase, TrmA family [Sideroxydans lithotrophicus
           ES-1]
 gi|291584868|gb|ADE12526.1| RNA methyltransferase, TrmA family [Sideroxydans lithotrophicus
           ES-1]
          Length = 432

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/366 (21%), Positives = 140/366 (38%), Gaps = 34/366 (9%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L   +        ++        P  YR RA   + H    +       +Q
Sbjct: 84  AQVAVKQRVLEDNLQRIGKVKPEVVLPPIYGQPWGYRQRARLSVRHVLKKEKTLVGFREQ 143

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
             K    + +    +  I +L+  ++  +  +   R  + QI+    +    +V     R
Sbjct: 144 NGKYVADMQHCEILTPKIASLLP-LLGELNEKFTARDIIPQIEVAVGEFVDVLVL----R 198

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK---ICLDRDYVDERLTVAGRTLIYRQ 182
           +L          +R+     + Q     +  +T      LD   +   L   G T+ +  
Sbjct: 199 ILAALSPSDEALIREFADKHQVQFWTQTKGPETVAPFYPLDAPSLSYSLPEFGITMPF-- 256

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
               FTQ N+ +N  M+   +       G+ + + +CG GNF+L +AR   +VL +E + 
Sbjct: 257 APTEFTQVNSDMNRLMVSRAMRLLAPQAGERIADFFCGLGNFTLPIARSGAQVLGIEGSD 316

Query: 242 PSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V  AR N   N +  N     M+  E  +A                + RF    VDPP
Sbjct: 317 ALVRRARQNAEYNGLSGNTTFQMMNLFEMDEATLA------------RAGRFDKWLVDPP 364

Query: 301 RSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHM 356
           R G  +    +    A   I+Y+SC+P +L RD  +L  +  ++++   + + FP T H+
Sbjct: 365 RDGAIELMKSISEATAPRRIVYVSCSPSTLSRDAEVLVHAKGYSLKAAGVMNMFPQTSHV 424

Query: 357 ECGVLL 362
           E   + 
Sbjct: 425 ESIAVF 430


>gi|94311050|ref|YP_584260.1| 23S rRNA 5-methyluridine methyltransferase [Cupriavidus
           metallidurans CH34]
 gi|93354902|gb|ABF08991.1| 23S rRNA (uracil-5-)-methyltransferase [Cupriavidus metallidurans
           CH34]
          Length = 491

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 133/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   L   +         +           YR RA   + H    
Sbjct: 127 GCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIAGPDWGYRYRARLTVRHVVKK 186

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     + +       ++A+++ +   +     +  ++ QI+       
Sbjct: 187 GGVLVGFHERKSSYVADMTHCEILPPHVSAMLVPLRELVGGL-SIHDRMPQIELAVGAEV 245

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +    L+DA ++      D  H  ++ +Q  G             +   L   G
Sbjct: 246 TALVLRVLE-PLNDADKDLLRAFADQ-HQVQFWLQPKGPDTVYPFYPAEQELAYTLPEFG 303

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L        D LL+L+CG GNF+L LA     V
Sbjct: 304 IRMPFK--PTDFTQVNHQINRVLIGRALRLLDAKPTDRLLDLFCGIGNFTLPLATQGASV 361

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N +               +      F    +      RF  
Sbjct: 362 MGIEGSEVLTTRALANAEYNGLA-----------AKTSFACRNLFEVTAEDIAALGRFDR 410

Query: 295 IFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             VDPPR G       + +            I+Y+SC+P +L RD  +L     + +   
Sbjct: 411 WLVDPPREGALAVCKALAELSQAGSDVLPKRIVYVSCSPATLARDAGLLVHEAGYRLAGA 470

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP+T H+E   +  R
Sbjct: 471 GVVNMFPHTSHVESIAVFER 490


>gi|301154942|emb|CBW14405.1| 23S rRNA (uracil-5)-methyltransferase [Haemophilus parainfluenzae
           T3T1]
          Length = 436

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/362 (22%), Positives = 144/362 (39%), Gaps = 31/362 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHI-WHDGDDLYHIMFDQQ 66
           E Q   K   L   +   Q   +Q+      E   YR R    + W+       + F Q+
Sbjct: 98  EMQRKAKEKALFSRLSKLQAEPIQLMPMICGEQWAYRRRVRLSLLWNAKSKTVEMGFRQK 157

Query: 67  -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + + + I   +     IN L+ ++ + +      + +L  I+ +++++  A++     R
Sbjct: 158 NSNQLVSIQQCLVAEQAINDLIPKLTSLLAQYSAPK-QLGHIELVSAENGVAMLL----R 212

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
              +        L +        + L    N   +  +  Y      +    L +     
Sbjct: 213 YKGNLAETDRTLLLEFARVNAVNLFLQDDQNIQLVHGEMPY----YALDDIRLSFDI--R 266

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q N  +N  M+E  L      Q D +L+L+CG GNF+L LA+     + +E     V
Sbjct: 267 DFIQVNTRLNQQMVETALDWLDLNQDDHVLDLFCGMGNFTLPLAKRVKSAVGIEGVLDMV 326

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N   NH+ NV+  +    +               +       F  I +DPPRSG 
Sbjct: 327 KKAQANAQFNHIENVEFYQADLDQ------------SFSEQPWSKQHFNKILLDPPRSGA 374

Query: 305 DDATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL +  + I + A+ D FP T H+E   L 
Sbjct: 375 AFALNALCELGAESILYVSCNPATLVRDAEILRSFGYRIIKTAMIDMFPNTSHLESVTLF 434

Query: 363 VR 364
           ++
Sbjct: 435 IK 436


>gi|309790365|ref|ZP_07684931.1| RNA methyltransferase, TrmA family [Oscillochloris trichoides DG6]
 gi|308227631|gb|EFO81293.1| RNA methyltransferase, TrmA family [Oscillochloris trichoides DG6]
          Length = 416

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 132/373 (35%), Gaps = 55/373 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QL  K   +R+ +              I   +P  YR  A  H+       ++    
Sbjct: 81  YPAQLRLKEQIVREQLAKLAGLETPPLAPIIPAPQPWGYRNTARLHVAGTRIGYHY---- 136

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS-DQAIVTLIY 123
             +++   +       LL+  L   +     + P  +  +  +    S S   AI  L  
Sbjct: 137 SGSRQ---VADLASDPLLLPVLNTALAGLREVLPPFKQAIEGVTLRASASYGYAIALLHG 193

Query: 124 HRL--------LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           H          L  AW      L          +Q                    L    
Sbjct: 194 HANTSPADLADLGAAWMAHTPNLAGVAAEAPGYVQPTPV---------------HLHDDL 238

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + +     SF Q N      ML+ +        G+ LL+ Y G G+F+L LA+  D V
Sbjct: 239 GGVTFMLSPESFFQVNTPQAERMLDLIGQELDLQPGERLLDAYSGVGSFALPLAKGLDAV 298

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE    +V      +  N + NV+ VR +++     +                 +F  
Sbjct: 299 VAVEENPTAVADGVRCLPFNGITNVEFVRGAAERVLPQLEG---------------QFDA 343

Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFP 351
             +DPPR G   A +  +   A   + YISC+P  L RDL ++L   + ++ +   D FP
Sbjct: 344 AILDPPRRGCHPAVIEELARLAPTRLAYISCHPGILARDLGAMLRIGYRLDLVQPIDLFP 403

Query: 352 YTRHMECGVLLVR 364
            T H+EC V+L +
Sbjct: 404 QTPHIECVVVLRK 416


>gi|227486795|ref|ZP_03917111.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235265|gb|EEI85280.1| TrmA family RNA methyltransferase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 456

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 145/386 (37%), Gaps = 50/386 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVP---NLQIFRSE-PIHYRMRAEFHIW---HDGDDLYHIM 62
           YE +L  K   ++ +     +    ++ I RS     +R + E+        G  +  + 
Sbjct: 89  YETELMLKHGMIKDLFKDNGIEYNNDISINRSPITSGFRNKMEYTFGDSIKGGPLVLGLH 148

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEM-----------MATIRLEPLLRAKLFQIDYLT 111
             ++  E +            N +  ++              +  E LLR  + +    T
Sbjct: 149 RKRRFYEIVDCKNCNIVDSDFNTIRSKVQEYFREKETDFYHKMAKEGLLRHLVIRKAMHT 208

Query: 112 SQSDQAIVTLIYHRLLDDAWR---------ECAIRLRDALHARKYQIQLIGRANKTKICL 162
            Q    +VT       D   R         +   R+    H     +       K K+  
Sbjct: 209 DQIMVILVTTSDSTFDDTRLRLFLNMLLDIDFDGRIFSVYHVINDSVADAVIPEKIKLIY 268

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            ++Y+ E +      L +R    SF QPN      + +     A      D+L+LY G G
Sbjct: 269 GKEYITEEMM----GLQFRISPFSFFQPNVFTAEKLYQKAFDLAEIDKTMDILDLYSGTG 324

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             + ++A        +EI + +VE A+ N   N ++NV  +                   
Sbjct: 325 TITQLMASVAKSATGIEIVEEAVEKAKENARINGLDNVNFLCGDV--------------- 369

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS-ILSTT 338
           L++I+    ++  + +DPPR+G+  A++  +        +YISCNP +   +L   +   
Sbjct: 370 LEEIEKVGNKYDVVVLDPPRAGISPASLEKILNIDCKKFVYISCNPKTQMENLKTFIEKG 429

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + I+   ++DQFP +RH+E   L+ +
Sbjct: 430 YEIKDYEIYDQFPNSRHLEAIALIQK 455


>gi|298487963|ref|ZP_07006002.1| RNA methyltransferase, TrmA family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157514|gb|EFH98595.1| RNA methyltransferase, TrmA family [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 451

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANAVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELSGMLKNFSKPQA-LGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 215 --VATAVLLRHTAPLAEADLALLQAFCSKHGAQLWLQGDGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAKEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|320323402|gb|EFW79490.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320327599|gb|EFW83611.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 451

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 145/371 (39%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQA-LGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G      +    D +  RL    
Sbjct: 215 --VATAVLLRHTAPLAEADLALLQAFCSKHGAQLWLHGEGEPQPVSPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAREV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|295676471|ref|YP_003604995.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1002]
 gi|295436314|gb|ADG15484.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1002]
          Length = 476

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 142/383 (37%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + +FR        YR RA   + +  + 
Sbjct: 112 GCSMQHLDMRAQVAVKQRVLEDNLQHLAKLRPETVFRPLHGPSWGYRYRARLAVRYLPEK 171

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +R   +   ++ Q++     S 
Sbjct: 172 GGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIY-DRMPQLELAVGSSV 230

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            A+V     R L+    E    LR     H  ++ IQ  G    T +      +D  L  
Sbjct: 231 TALVV----RNLEPLTAEDEQVLRKFADEHNVQFWIQPGGPDTVTPLYPLDVQLDYTLPE 286

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 287 YGIRMPFK--PTDFTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISR 344

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E ++   + A  N   N V  +      +  E T    R                
Sbjct: 345 EVVGIEGSEVLTQRALANAELNGVAGHTSFACRNLFEVTADDLRAL------------GH 392

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G       + +            I+Y+SC P +L RD  +L     + +
Sbjct: 393 FDKFLVDPPREGALAIAKALAEIAQSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRL 452

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + + FP+T H+E   L  R
Sbjct: 453 VGAGVVNMFPHTSHVESIALFER 475


>gi|331016787|gb|EGH96843.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 451

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 142/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I+        +  +M ++ A ++        L  ++  +  S 
Sbjct: 159 KRLDVGFRAAASQDIVSIEECPVLVQALQPIMSQLPAMLKSFSK-PQVLGHVELFSGSS- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L +   L +A       L+    A   Q+ L G           D +  RL    
Sbjct: 217 -TAVLLRHTAPLAEA---DLATLQAFCKAHGAQLWLHGEGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L        + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALHWLAPAADERVMDLFCGLGNFALPLASLAKDV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD   L    + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|143581809|sp|Q1LLI5|RUMA_RALME RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 466

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 133/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       QLA K   L   +         +           YR RA   + H    
Sbjct: 102 GCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIAGPDWGYRYRARLTVRHVVKK 161

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     + +       ++A+++ +   +     +  ++ QI+       
Sbjct: 162 GGVLVGFHERKSSYVADMTHCEILPPHVSAMLVPLRELVGGL-SIHDRMPQIELAVGAEV 220

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +    L+DA ++      D  H  ++ +Q  G             +   L   G
Sbjct: 221 TALVLRVLE-PLNDADKDLLRAFADQ-HQVQFWLQPKGPDTVYPFYPAEQELAYTLPEFG 278

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L        D LL+L+CG GNF+L LA     V
Sbjct: 279 IRMPFK--PTDFTQVNHQINRVLIGRALRLLDAKPTDRLLDLFCGIGNFTLPLATQGASV 336

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N +               +      F    +      RF  
Sbjct: 337 MGIEGSEVLTTRALANAEYNGLA-----------AKTSFACRNLFEVTAEDIAALGRFDR 385

Query: 295 IFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             VDPPR G       + +            I+Y+SC+P +L RD  +L     + +   
Sbjct: 386 WLVDPPREGALAVCKALAELSQAGSDVLPKRIVYVSCSPATLARDAGLLVHEAGYRLAGA 445

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP+T H+E   +  R
Sbjct: 446 GVVNMFPHTSHVESIAVFER 465


>gi|294056010|ref|YP_003549668.1| RNA methyltransferase, TrmA family [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615343|gb|ADE55498.1| RNA methyltransferase, TrmA family [Coraliomargarita akajimensis
           DSM 45221]
          Length = 409

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 142/374 (37%), Gaps = 70/374 (18%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWH--- 53
            G       YE+QLAEK   ++++M             I   E  +YR +   H      
Sbjct: 92  GGCQYQHVDYERQLAEKTGHVKELMEKIGELDHPIEGAIGSPEVYYYRSKITPHYQRQNK 151

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           DG      +   +  + + ++     +  IN  + E     RL    + +      L   
Sbjct: 152 DGSQPIGFLQFGRRNQIVDVEQCPIATREINEALPEAREEARLSGGKKRRQRGGTLLLRH 211

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
             + +VT                                           +  V ER+  
Sbjct: 212 VLEGVVTDP-----------------------------------------KAVVSERV-- 228

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
             R + ++     F Q N  I   M+++V A         L++ YCG+G F+L  A+ F+
Sbjct: 229 --RDVTFQFKAGEFFQNNPFILPKMVDYVEAEASADGARYLVDAYCGSGLFALSTAKSFE 286

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V  VE++  +V  A+ N   + ++N + +   ++     ++   +              
Sbjct: 287 QVAGVEVSDQAVLWAQANCRISGISNARFLIGKAEAIFNGLKFPAD-------------E 333

Query: 293 KTIFVDPPRSGLDDAT-VGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             + +DPPR G D++  + ++Q  P  ++Y+SC+P +  RD+       + + R+  FD 
Sbjct: 334 TALIIDPPRKGCDESFRLQLLQFRPQRLVYVSCDPATQARDVKAFVDGGYRVTRIQPFDL 393

Query: 350 FPYTRHMECGVLLV 363
           FP+TRH+E  V L 
Sbjct: 394 FPHTRHIENVVSLS 407


>gi|307729589|ref|YP_003906813.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1003]
 gi|307584124|gb|ADN57522.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1003]
          Length = 476

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 136/381 (35%), Gaps = 35/381 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIW--HDG 55
             ++       Q+A K   L   +L       + +FR        YR RA   +    + 
Sbjct: 112 GCSMQHLDIRAQVAVKQRVLEDNLLHLAKLRPETVFRPIHGPAWGYRYRARLAVRFLPEK 171

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +R   +   ++ Q++     S 
Sbjct: 172 GGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIY-DRMPQLELAVGSSV 230

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R L+         LR+     K Q  +      T   L    V    T+  
Sbjct: 231 TALVV----RNLEPLTEADEQVLREFADEHKVQFWIQPGGPDTVTPLYPLDVQLDYTLPE 286

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 287 FDIRMPFKPTDFTQVNHAINRVLVGRALRLLAPARTDRVLDLFCGIGNFTLPLARIAKEV 346

Query: 235 LAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           + +E ++     A  N   N V  +      +  E T    R                F 
Sbjct: 347 VGIEGSEVLTTRALANAELNGVAGHTSFACRNLFEVTADDLRAL------------GHFD 394

Query: 294 TIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIER 343
              +DPPR G       + +            I+Y+SCNP +L RD  +L     + +  
Sbjct: 395 KFLIDPPREGALAVAKALAEIAQSGTGPLPARIVYVSCNPSTLARDSGLLVHEAGYRLVG 454

Query: 344 LALFDQFPYTRHMECGVLLVR 364
             + + FP+T H+E   L  R
Sbjct: 455 AGVVNMFPHTSHVESIALFER 475


>gi|82703334|ref|YP_412900.1| 23S rRNA 5-methyluridine methyltransferase [Nitrosospira
           multiformis ATCC 25196]
 gi|91207805|sp|Q2Y6W3|RUMA_NITMU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|82411399|gb|ABB75508.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 439

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 148/379 (39%), Gaps = 35/379 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        ++        P  YR RA   + +    
Sbjct: 75  GCSMQHMDVRTQVAAKQRVLEDNLKHIGKVAPELVLPAVYGSPWGYRYRARLSVRYVAKK 134

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         I+AL++ +   +     +R +L QI+    +  
Sbjct: 135 GGVLVGFHEKRSSFIADMQACRIMPPRISALIMPLRKLVESL-SIRERLPQIEVSLGEDV 193

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLT 172
             +V     R+L+    +    L+        Q+ L     +T       D   +   L 
Sbjct: 194 DVLVL----RILEPLTAQDETLLKAFADQHHVQLFLQTGGPQTAYPFYPEDAPELSYTLP 249

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
               T+ +   E  FTQ N  +N  ++   L      +G+ + +L+CG GNF+L +AR  
Sbjct: 250 EFDVTIPFHPTE--FTQVNPMVNRILVRRALNLLDPRRGERIADLFCGLGNFTLPVARRG 307

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V+  E +   V  AR N   N +         S  F +A   E + + +++       
Sbjct: 308 AQVVGYEGSAALVSRARQNSQRNGLAG-------STRFMEANLFEIDESWMREQG----D 356

Query: 292 FKTIFVDPPRSGLDDATVGM----VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLA 345
           F  + +DPPR G       +    ++ +  I+Y+SCNP +L RD S+L     + ++   
Sbjct: 357 FDKMLIDPPREGAVAVVTALEEKQLKPW-RIVYVSCNPATLARDASVLVHRNGYALKAAG 415

Query: 346 LFDQFPYTRHMECGVLLVR 364
           + + FP+T H+E   L  +
Sbjct: 416 VINMFPHTAHVESIALFEK 434


>gi|78212870|ref|YP_381649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
           CC9605]
 gi|78197329|gb|ABB35094.1| RNA methyltransferase, TrmA family [Synechococcus sp. CC9605]
          Length = 465

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 147/397 (37%), Gaps = 52/397 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIWHD-G 55
             TL       Q   K  +L+Q M         P   I  +E    YR RA   +  D  
Sbjct: 90  GCTLQRLDDSAQTRWKAQQLQQTMQRIGGIDVAPAATIVDAERCFGYRNRALIPLKRDQN 149

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR------LEPLLRAK-LFQID 108
             L    F  +T + + +++       ++  +  +   +          LL A+ L  + 
Sbjct: 150 GRLKAGYFRPKTHKIVNLNHCPVLDPRLDTFVEPLKQDLDSGGWPADHDLLEAQGLRHLG 209

Query: 109 -YLTSQSDQAIVTLIYH----RLLDD---AWRECAIRLRDALHARKYQIQLIGRANKTKI 160
             L S +   ++TLI      R L+D   +W E    ++      + +   +    KT  
Sbjct: 210 LRLASATGDVLITLISSHAQLRGLEDLAQSWVERWPEVKGVCLNLQPEANNLVLGRKTHC 269

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH----MLEWVLAATKGIQGDLLEL 216
                 ++E+       L       +F Q N          + +W+L    G    +++ 
Sbjct: 270 LAGVPTIEEQFCGIKLAL----SSTTFVQVNTPQAERIVQLLTDWLLNQCAGAL--VVDA 323

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRR 275
           YCG G  +L LA+    V  +E+   SVE AR N   N + +          +   A   
Sbjct: 324 YCGVGTIALPLAKAGFDVQGLELNPDSVEQARLNAMHNGLSSRCAFHAGDVADLLAA--- 380

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLS 333
                       H    + + +DPPR GLD   V  +   P   ++Y+SC+P +  RDL 
Sbjct: 381 ------------HLDDCQALVLDPPRRGLDRRVVDSILEQPPVVVVYLSCDPATQARDLK 428

Query: 334 IL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            L   S ++ +E L   D FP T H+E   LL R  S
Sbjct: 429 ALLAPSGSYELEVLQPVDFFPQTTHLESLALLKRVSS 465


>gi|148652196|ref|YP_001279289.1| 23S rRNA 5-methyluridine methyltransferase [Psychrobacter sp.
           PRwf-1]
 gi|148571280|gb|ABQ93339.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter sp.
           PRwf-1]
          Length = 516

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 155/394 (39%), Gaps = 46/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPN-LQIFRSEPIHYRMRAEFHIWH--DG 55
             +L   Q E Q+A K   L +++      Q  N LQ   ++ + YR +A   + +    
Sbjct: 134 GCSLQHWQPEGQIAFKQTVLAELLEHQANIQPDNWLQPVVADRLGYRTKARMGVRYVAKK 193

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS- 114
           D       ++ +     ++        I    +E + ++      RA + QI+    ++ 
Sbjct: 194 DTALVGFRERNSNFLAELNECHILDKRI-GFELENLKSLISSLEARAHIAQIELAMGEAI 252

Query: 115 ------DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICL-DRD 165
                 +Q +  ++ H  L+   +    +L+    AR +Q+ L  +  ++  +I L D D
Sbjct: 253 PELKDGNQPVALILRH--LEPLSKSDIDQLKAFFKARNWQLYLQSKGPESIERIALHDTD 310

Query: 166 YVDERLT-----VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
            V E+       +    L Y  I   FTQ N  +N  M +          G+ +L+L+ G
Sbjct: 311 DVSEQFGRLYYQLPEFNLTYEFIPTDFTQVNLSVNRKMTKLACDLLDLKPGERVLDLFSG 370

Query: 220 NGNFSLVLARHFDR-------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            GNFSL LAR            + VE +      A  N   N ++N +      ++ TQ 
Sbjct: 371 LGNFSLPLARLVGGEDGSQGLAIGVEGSDAMTARAADNAKRNGISNTEFYN---QDLTQD 427

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD 331
                      +       F  I +DPPRSG  +    + +     I+Y+SCNP +L RD
Sbjct: 428 FS---------EQPWAQQGFDAILIDPPRSGAWEVMQYLPRFNASRIVYVSCNPATLARD 478

Query: 332 LS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
              +L   + +    + D F +T H+E      +
Sbjct: 479 TKALLEQGYRLTDAGVMDMFCHTGHVESIARFEK 512


>gi|28868899|ref|NP_791518.1| TrmA family RNA methyltransferase [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|37088361|sp|Q885Y8|RUMA_PSESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|28852138|gb|AAO55213.1| RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 451

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 141/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I+        +  +M ++ A ++        L  ++  +  S 
Sbjct: 159 KRLDVGFRAAASQDIVSIEECPVLVQALQPIMSQLPAMLKSFSK-PQVLGHVELFSGSS- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L +   L +A       L+        Q+ L G           D +  RL    
Sbjct: 217 -TAVLLRHTAPLAEA---DLATLQAFCKTHGAQLWLHGEGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L        + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALHWLAPAADERVMDLFCGLGNFALPLASLAKDV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD   L    + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|171321351|ref|ZP_02910308.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria MEX-5]
 gi|171093369|gb|EDT38559.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria MEX-5]
          Length = 434

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 137/380 (36%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + +F         YR RA   + +    
Sbjct: 70  GCSMQHLDMRAQVAIKQRVLEDNLWHLSKLRAETVFAPIHGPSWGYRYRARLTVRNVAKK 129

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 130 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 188

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  D   E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 189 TALVLRVLEPINAD--DEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEFG 246

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 247 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREV 304

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E ++     A  N   N V+                     F    D       F  
Sbjct: 305 MGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTGDDLRALGAFDK 353

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 354 FLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 413

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 414 GVVNMFPNTSHVESIALFER 433


>gi|297568513|ref|YP_003689857.1| RNA methyltransferase, TrmA family [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924428|gb|ADH85238.1| RNA methyltransferase, TrmA family [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 450

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 153/392 (39%), Gaps = 41/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y  QL  K   L++++    +           +      HYR R    +   
Sbjct: 74  GCDLQHAVYSAQLTFKQQILQELLQRAGLAEKVLPRLAPPLTAPSEFHYRQRIRMQV--- 130

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            +      F   +     ++  +     INAL  E+      + L          L   S
Sbjct: 131 -EQGQAGFFQTGSHRLQPVNSCLLARPEINALWQELQPHEAWQQLAAQVSALEINLDPAS 189

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY-------- 166
            + ++ L + R    A R  A++L   L A K  +  +   +     +DRD         
Sbjct: 190 RRLVLLLHHRRRPRPAERRAALQLCHDLPALK-GLAFLPVGHAAGPFIDRDSGPAGRLGS 248

Query: 167 ------VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCG 219
                 +   +T AGRTL  +     F+Q N   N  +L  ++   +    +++ +L+CG
Sbjct: 249 EALQLCLKLPVTPAGRTLELQFEPWGFSQVNEEQNRQLLTLLIELLQPAGHEIVADLHCG 308

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            GNFSL LA     V  V++   ++  A+ N  AN +NN    +  + +   A++     
Sbjct: 309 MGNFSLPLALLVGEVHGVDLQAAAIRGAKRNAEANRLNNCHFRQAEAHQGLAALQAA--- 365

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDL-SILST 337
                      R   + +DPPR+G  +    +    P  ++ ISC+P ++ RDL ++L+ 
Sbjct: 366 ---------GIRPDVLLLDPPRAGCRELVATLEAPLPGKVVMISCDPATMTRDLAALLAL 416

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSGW 369
            + +E + L D FP T H+E   LL R  S  
Sbjct: 417 NYQVETMRLVDMFPQTHHLETITLLSRNNSAK 448


>gi|119897391|ref|YP_932604.1| 23S rRNA 5-methyluridine methyltransferase [Azoarcus sp. BH72]
 gi|143580584|sp|A1K4G2|RUMA_AZOSB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|119669804|emb|CAL93717.1| putative 23S rRNA (Uracil-5-) methyltransferase [Azoarcus sp. BH72]
          Length = 433

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 137/377 (36%), Gaps = 32/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIW--HDG 55
             ++       Q A K   L   +         I  S        YR RA   +      
Sbjct: 74  GCSMQHLDTLAQAATKQRVLEDALWRIGKVKPGIIYSAIQGPAWGYRYRARLGVRLVPAK 133

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL+  +   +     +  +L QI+   S++ 
Sbjct: 134 GGVLIGFHERRSSYIADLGVCPVLPAHVSALLPALK-VLVASLSIADRLPQIEVAVSEAT 192

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD---RDYVDERLT 172
             +V     R L    +    +LR        Q+ L      + + L       +   L 
Sbjct: 193 TVLV----FRNLLALKKADEAQLRSFAETHGVQVWLQPEGPDSIVPLHPRSGPGLTYTLP 248

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
                L +R     FTQ N  IN  ++   +   +   G+ + +L+CG GNFSL +AR  
Sbjct: 249 EFDVALDFR--ATDFTQVNVHINRLLIRRAMQLLQPAPGERIADLFCGLGNFSLPIARRG 306

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE ++  V  A  N   N ++       S  EF  A      F+  +D       
Sbjct: 307 ATVVGVEGSEALVARALENARRNGLD-------SRTEFHAA----NLFDATEDSLAALGP 355

Query: 292 FKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALF 347
              + +DPPR G       +   Q    I+Y+SCNP +L RD ++L     + +    + 
Sbjct: 356 LDKLLIDPPREGAIAVVKAVGPAQQPARIVYVSCNPATLARDAAVLVHEKGYVLRGAGIA 415

Query: 348 DQFPYTRHMECGVLLVR 364
           + FP T H+E   L  R
Sbjct: 416 NMFPQTSHVESIALFER 432


>gi|119773768|ref|YP_926508.1| 23S rRNA methyluridine methyltransferase [Shewanella amazonensis
           SB2B]
 gi|143582879|sp|A1S382|RUMB_SHEAM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|119766268|gb|ABL98838.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella amazonensis
           SB2B]
          Length = 384

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 150/386 (38%), Gaps = 39/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L+     +QL EK  RL  ++    V   L         +R +A+  +         
Sbjct: 13  SCRLMSKPVTEQLLEKEARLTHLLGGLPVDERLAPVSGPEFGFRNKAKMVVMGAAHAPVL 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDY 109
            +      + + + +       + AL++E+ + +R   +           L+  L     
Sbjct: 73  GIPGPDG-QPVDLSHCPLYPQDMQALLLELTSFVRRAGIPPYRVDKAKGELKFILLTRSA 131

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRAN---KTKICLDR 164
           +  +     V L     +    RE    L D  A+      +Q +  A    + +I L +
Sbjct: 132 VRGEFMLRFV-LRSKDAIPRIERELPKLLADFPAIKVVSVNLQPVHMARLEGEEEIFLTQ 190

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
                RL      +       SF Q N  +   +          +    L +L+CG G F
Sbjct: 191 AT---RLDEVFNGVPLFIRPKSFFQTNPEVASRLYATAAKWVDELSPKSLWDLFCGVGGF 247

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A     V  +EI   +++ A+ + AA  ++N+    + S +F    + +       
Sbjct: 248 GLHCANESLPVTGIEIEAEAIDCAKTSAAAMGLDNLSFAALDSTDFAMGQQAQE------ 301

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTI 341
                    + I V+PPR G+ +     + A+    I+Y SCNP++L +DL+++S  + I
Sbjct: 302 -------VPEVIIVNPPRRGIGEELCERLSAFGPRAIIYSSCNPETLAKDLALIS-GYRI 353

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPS 367
            R+ LFD FP++ H E   LL+++ +
Sbjct: 354 ARVQLFDMFPHSDHFEVLCLLLKEAA 379


>gi|323976756|gb|EGB71844.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TW10509]
          Length = 375

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 139/373 (37%), Gaps = 39/373 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
            +QL+ K   L+ ++  F V    +        +R +A+  +    +     M  +    
Sbjct: 22  PEQLSAKTADLKNLLADFSVEEWCEPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTP 81

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQSDQAIVTLIY 123
           ++      +      + A +   +A   L P      R +L  I    SQSD  ++    
Sbjct: 82  EDLCDCPLYPSSFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFV 141

Query: 124 HR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA 174
            R       L  A      +L   L      IQ +  A    +T+I L      + L   
Sbjct: 142 LRSDTKLAQLRKALPWLQAQLPQ-LKVITVNIQPVHMAIMEGETEIYLSE---QQALAER 197

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
              +       SF Q N  +   +        + +    + +L+CG G F L  A    +
Sbjct: 198 FNDVPLWIRPQSFFQTNPVVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ 257

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +  +EIA  ++  A+ + A   +  ++   + S +F  A                    +
Sbjct: 258 LTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA---------------QGEVPE 302

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+       +    P  I+Y SCN  ++ +D+  LS  + IER+ LFD FP
Sbjct: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELS-GYRIERVQLFDMFP 361

Query: 352 YTRHMECGVLLVR 364
           +T H E   LLV+
Sbjct: 362 HTAHYEVLTLLVK 374


>gi|258510692|ref|YP_003184126.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477418|gb|ACV57737.1| RNA methyltransferase, TrmA family [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 449

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 136/378 (35%), Gaps = 31/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
              +    Y  Q A K  R+R+M     +    +   E    P  YR + +  +      
Sbjct: 87  GCQVQHMAYAAQAAWKEARIRRMAERLGLEAGVVRPIETSHTPYRYRNQVQMPVRWNATA 146

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +    F+  + +    +  +     ++ ++      +         +  +    S + 
Sbjct: 147 QRVEMGFFELGSHDMAVTETCLLVPEAMDDVLRRARWFLTSLGSTAQFVHHVIVRQSHAT 206

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRD-----ALHARKYQIQLIGRANKTKICLDRDYVDER 170
             +  +      D + +    R             + +       +  ++     +++E 
Sbjct: 207 GDMAVVFALATDDPSVKRSVGRFHAPQVVQVAVTVQPRAHGPVWGDGAEVMKGGSHLEEN 266

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR 229
           L      L  R    SF Q  A +   M   V+ A +  + D+ ++ YCG G  +L+LA 
Sbjct: 267 LC----GLRVRWSPRSFLQVQADMAERMYHHVVRAVEVRETDVVIDAYCGIGAMTLLLAS 322

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           H  R + VE  + ++  AR N   N V N + V    + +                    
Sbjct: 323 HAARAVGVEEVEDAIADARANAKLNRVRNAEFVVDRVERWLPRFVEA------------G 370

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLAL 346
            R   +  DPPR G+D A +          ++Y+SCNP +L RDL +L+     +  +  
Sbjct: 371 NRADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLLAARGFYVTDIQP 430

Query: 347 FDQFPYTRHMECGVLLVR 364
           FD FP T H+EC V + R
Sbjct: 431 FDMFPQTSHVECVVTMRR 448


>gi|116624915|ref|YP_827071.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228077|gb|ABJ86786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 389

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 144/370 (38%), Gaps = 57/370 (15%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
            G       YE QLA K   L + M           + +  SEP  YR R + H+    +
Sbjct: 68  GGCHYQHAPYEYQLATKQAILAEEMRRLGKIEPPEEIAVVSSEPFGYRNRVQLHV----E 123

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
           +      + ++ +   +     GS  I A +  +    R     R  +  I+  + ++  
Sbjct: 124 ESRIGYREARSHKLCAVGQCPVGSPKIEAAIRALNEMARDSRWPRF-MKSIEVFSDENQV 182

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +  L   R +       A R  D    +   +                 V+  L   GR
Sbjct: 183 QLNVLETERPV-------ARRFFDWCGEKIPGM-----------------VEGALDYEGR 218

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
              +R   NSF Q N  +   ++E  +   +G     L+LY G G  SL LAR F  V A
Sbjct: 219 ---FRVSSNSFFQVNRFLIDRLVEVAIEGAEGDTA--LDLYAGVGLLSLPLARKFREVTA 273

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE    +V   ++N   N + NV+ +  +++E+  A+                     + 
Sbjct: 274 VESGAGAVRDLQFNAERNGLANVRALPKTAEEYLLALEAA---------------PDLVV 318

Query: 297 VDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           +DPPR+GL    V  +       +  ++C+P +L RDL+ L +  + +E++ L D FP T
Sbjct: 319 LDPPRTGLGKTVVKRLSELRPRQVTIVACDPATLARDLAGLVAAGYRVEKMTLVDLFPQT 378

Query: 354 RHMECGVLLV 363
            H+E  V L 
Sbjct: 379 YHLETVVRLT 388


>gi|237653665|ref|YP_002889979.1| 23S rRNA 5-methyluridine methyltransferase [Thauera sp. MZ1T]
 gi|237624912|gb|ACR01602.1| RNA methyltransferase, TrmA family [Thauera sp. MZ1T]
          Length = 441

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 132/378 (34%), Gaps = 30/378 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIW--HDG 55
             ++     + Q A K   L   +      +    L         YR RA   +      
Sbjct: 74  GCSMQHLDADAQAAVKQRLLEDALRHIGKLHADRILPAIHGPAWGYRYRARLGVRLVPSK 133

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L     ++++   + +         I+AL+  +   +     +  +L Q++    +  
Sbjct: 134 GGLRVGFHERRSSYIVDMRTCPVLPPAISALLPRLRTMLAGL-SIADRLPQVEIAVGEDS 192

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD-ERLTVA 174
              V     R L         +L     A   Q  +      +   L          T+ 
Sbjct: 193 TVFV----FRNLLPFSAADEKQLAAFADAEGIQAWVQPAGPDSARPLHPANAQLPFYTLP 248

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              L        FTQ NA IN  ++   +       G+ + +L+CG GNFSL +AR    
Sbjct: 249 EFGLRLDFRPTDFTQVNADINRLLIRRSMQLLDPRPGERIADLFCGLGNFSLPIARLGAE 308

Query: 234 VLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           V+ VE ++  VE A  N A N +    +    +  E T+            D      R 
Sbjct: 309 VVGVEGSEALVERAHANAARNGLAARCEFHAANLFETTE------------DSLAALGRL 356

Query: 293 KTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFD 348
             + +DPPR G       +   +    I+Y+SCNP +L RD ++L     + +    + +
Sbjct: 357 DKLLIDPPREGAIAVVKAIDPSRGPSRIVYVSCNPATLARDAAVLVHEKGYRLAAAGIAN 416

Query: 349 QFPYTRHMECGVLLVRKP 366
            FP T H+E   L  R P
Sbjct: 417 MFPQTSHVESVALFERTP 434


>gi|195127973|ref|XP_002008441.1| GI11815 [Drosophila mojavensis]
 gi|193920050|gb|EDW18917.1| GI11815 [Drosophila mojavensis]
          Length = 597

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 150/420 (35%), Gaps = 64/420 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNLQIFR-----SEP--IHYRM 45
             L    YEQQL +K + +  ++  +            P+L  F        P    YR 
Sbjct: 158 CPLAEMPYEQQLEQKTEEMSALLKKYTQELRHLNADAKPHLDKFEFKGVLPSPTVQGYRN 217

Query: 46  RAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMIEMMATIRLE 97
           + EF +  +      + F   +         E   + +    +        +++   + +
Sbjct: 218 KNEFTVGKNAAGEIVVGFRLGSYSDGSVEVAEVQELPHLPAQAKWAARSFQQLVRQSKFQ 277

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDD-AWRECAIRLRDALHARK-- 146
           P          R  + +    T +    +V  IY   L++    E    L+      +  
Sbjct: 278 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLNETELLELQQELKAFYEQPEQN 335

Query: 147 ---------YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                    YQ      A +    +        +T   + L +R    +F Q N      
Sbjct: 336 ETHKCTSLYYQDVKHREAGQMVNPVTHLSGSTHITDTIQGLQFRISPLAFFQINTAGADV 395

Query: 198 MLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +      Q  + L++ CG G  +L  A+H  +VL VEI   +++ A +N   N +
Sbjct: 396 LYQQAIDLAAPNQETIMLDICCGTGTIALAFAKHCKQVLGVEIVPDAIKDAEHNAETNGI 455

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-- 314
            N K    ++ ++ ++M RE  + +     I         VDPPR+GL   ++  +++  
Sbjct: 456 KNCKFFTGNADDYIKSMVREAVYGQEPGKPIDL----IAVVDPPRAGLHTRSIAAIRSAS 511

Query: 315 -YPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
               ++Y+SCNP+S  R+   L               +     D FP+T H E  +L  R
Sbjct: 512 DIKRLVYVSCNPNSAKRNFIELARPESKQYKGEPFYPKTAVAVDMFPHTTHTELVILFER 571


>gi|238027066|ref|YP_002911297.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia glumae
           BGR1]
 gi|237876260|gb|ACR28593.1| RNA methyltransferase, TrmA family protein [Burkholderia glumae
           BGR1]
          Length = 464

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 141/384 (36%), Gaps = 41/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIW--HDG 55
             ++       Q+A K   L   +        Q   S        YR RA   +      
Sbjct: 100 GCSMQHLDVRAQVAIKQRVLEDNLWHLSKLRAQTMFSPIHGPAWGYRYRARLTVRDVAKK 159

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+     S 
Sbjct: 160 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRELVAGL-SIRDRMPQIELAVGSSV 218

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172
            A+V     R+L+         LR    A + Q  L  +   +      LDR  +D  L 
Sbjct: 219 TALVL----RVLEPINAADEALLRAFADAHQVQFWLQPKGPDSVFPFYPLDRS-LDYTLP 273

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
                + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR  
Sbjct: 274 EFNIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPRRGDRVLDLFCGIGNFTLPLARLS 331

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             V+ +E ++     A  N  AN V+ +      +  E T    R               
Sbjct: 332 REVVGIEGSEVLTTRALENAKANGVDAHTSFACRNLFEVTADDLRAL------------G 379

Query: 291 RFKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHT 340
            F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + 
Sbjct: 380 GFDKFLVDPPREGALAVSKALAEIAQSGDGPLPQRIVYVSCNPATLARDAGLLVHEAGYR 439

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +    + + FP T H+E   +  R
Sbjct: 440 LRGAGVVNMFPNTSHVESIAVFER 463


>gi|237798965|ref|ZP_04587426.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806201|ref|ZP_04592905.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021819|gb|EGI01876.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027314|gb|EGI07369.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 451

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 142/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +++QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHDEQLALKQRMLAEQLLRVANIAPDEWAAPLSGSELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + ID        +  +M ++ + ++        L  ++  +  S 
Sbjct: 159 KRLDVGFRAAASQDIVSIDECPVLVQALQPIMRQLPSMLKSFSK-PQVLGHVELFSGSST 217

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             ++     R            L+    A+  Q+ L G           D +  RL    
Sbjct: 218 ALLL-----RHTAPLADVDLAVLQAFCSAQGAQLWLHGDGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L        + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAADERVMDLFCGLGNFALPLAGLAKEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD + ++   + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQISKTGARRLLYVSCNPATLARDTVELIRQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|320528187|ref|ZP_08029352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
 gi|320131535|gb|EFW24100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solobacterium moorei
           F0204]
          Length = 434

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 142/378 (37%), Gaps = 33/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHDGD 56
              L I  Y++QL  K D L Q +  +        R      + + YR + +  +    D
Sbjct: 72  GCPLFILDYQKQLRHKQDILEQALYKYGNVKRSFVRDMHASEKQVGYRSQCKLPVQKSHD 131

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----LRAKLFQIDYLT 111
            L + M++ +T     I++F+     +  +  E++  +  E          K  +   L 
Sbjct: 132 ILVNGMYEPKTNHFHPIEHFLIHDPKLEEIRKEILRILNEEGYDAYNQRSQKGLRYIVLR 191

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----V 167
               +A  TLI  +    +     I     +   +   Q      KT             
Sbjct: 192 VIDGKAQCTLITGKEYIPSTIIDRIM---EIPGMESLCQSFNTNRKTNQIFGSPAKVLAG 248

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
              LT++   +  +    SF Q N      M +  ++     +  L+E YCG G  +L+ 
Sbjct: 249 QNTLTISMDQIQLQLSAESFFQLNINQAEKMYQMAISKIDPCK-VLVEAYCGIGTMALMA 307

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
               + V  +E    +VE A  N   N++ N + +   +    + +  ++          
Sbjct: 308 KDKANVVYGIESVPSAVENATNNAKLNNITNTEFICDDAAHGLRKIAMKKTV-------- 359

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
                  + VDPPRSG+DD  +  +       I+YISCNP +L ++L +L   + +  + 
Sbjct: 360 -----DCLLVDPPRSGMDDEMLNTIMHVLPKKIIYISCNPSTLAKNLKVLKQRYHVVTVI 414

Query: 346 LFDQFPYTRHMECGVLLV 363
            +D FP T  +E   +L 
Sbjct: 415 PYDLFPQTPLVESITVLE 432


>gi|170703615|ref|ZP_02894357.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria
           IOP40-10]
 gi|170131472|gb|EDT00058.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria
           IOP40-10]
          Length = 484

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 140/381 (36%), Gaps = 35/381 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + +F         YR RA   + +    
Sbjct: 120 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETVFAPIHGPSWGYRYRARLTVRNVAKK 179

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 180 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 238

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  D   E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 239 TALVLRVLEPINAD--DEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEFG 296

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 297 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREV 354

Query: 235 LAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           + +E ++     A  N   N V+ +      +  E T    R                F 
Sbjct: 355 MGIEGSETLTTRALANARENGVDGHTTFACRNLFEVTGDDLRAL------------GAFD 402

Query: 294 TIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIER 343
              +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++ 
Sbjct: 403 KFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKG 462

Query: 344 LALFDQFPYTRHMECGVLLVR 364
             + + FP T H+E   L  R
Sbjct: 463 AGVVNMFPNTSHVESIALFER 483


>gi|143580709|sp|Q0BEW2|RUMA_BURCM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 465

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 136/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + +F         YR RA   + +    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETVFAPIHGPSWGYRYRARLTVRNVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  D   E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 220 TALVLRVLEPINAD--DEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEFG 277

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 278 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREV 335

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E +      A  N   N V+                     F    D       F  
Sbjct: 336 MGIEGSDTLTTRALANARENGVDGHTTFAC-----------RNLFEVTGDDLRALGAFDK 384

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 385 FLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 445 GVVNMFPNTSHVESIALFER 464


>gi|71064920|ref|YP_263647.1| 23S rRNA 5-methyluridine methyltransferase [Psychrobacter arcticus
           273-4]
 gi|123649629|sp|Q4FUU5|RUMA_PSYA2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|71037905|gb|AAZ18213.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychrobacter arcticus
           273-4]
          Length = 512

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 144/390 (36%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGDD 57
              L   Q E Q+  K   L +M++          L+    + + YR +A   + +    
Sbjct: 135 GCNLQHWQPEAQINFKQSVLAEMLVHQANVAPDHWLEPVVGDRLGYRTKARLGVRYVAKK 194

Query: 58  --LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ-- 113
                   ++ +     ++        I    IE + T+      R K+ Q++    +  
Sbjct: 195 ETALVGFRERSSNFLAELNECHILDPRI-GFEIENLKTLISTLESRNKIAQLELAMGEYL 253

Query: 114 -----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--TKICLDR-D 165
                 DQ +  ++  R L+        +L+    AR +Q+ L  +      +I L   D
Sbjct: 254 PELPDGDQPVALIV--RNLEPLSDADIDKLKVFFAARNWQLYLQPKGADSIQRIALTAAD 311

Query: 166 YVDERLT-----VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
            + E+       +    L +  I   FTQ N  +N  M +          G+ +L+L+ G
Sbjct: 312 DLSEQFGRLYYQLPEYDLTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSG 371

Query: 220 NGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
            GNFSL LAR       V+ VE ++     A  N   N +NN +                
Sbjct: 372 LGNFSLPLARLVGETGSVVGVEGSEAMTIRAADNARRNGINNTEFYSQDLTH-------- 423

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLS-I 334
                  D    +  F  + +DPPRSG  +    + +     I+Y+SCNP +L RD   +
Sbjct: 424 ----DCTDKPWANQGFDALLIDPPRSGAWEIMQYLPKFNAERIVYVSCNPATLARDTKAL 479

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L   + +    + D F +T H+E      +
Sbjct: 480 LEQGYRLTHAGVMDMFCHTGHVESIARFEK 509


>gi|167836388|ref|ZP_02463271.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           thailandensis MSMB43]
          Length = 467

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 138/383 (36%), Gaps = 37/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGSQV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R+L+         LR+   A + Q  L  +   T        V    T+  
Sbjct: 220 TALVL----RVLEPIDAADEALLREFADAHRVQFWLQPKGPDTAAPFYPLDVQLDYTLPE 275

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF--D 232
             +        FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR     
Sbjct: 276 FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREG 335

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E ++     A  N   N V+ +      +  E T    R                
Sbjct: 336 EVVGIEGSETLTSRALANAKENGVDGHTSFACRNLFEVTADDLRAL------------GA 383

Query: 292 FKTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTI 341
           F    +DPPR G      A   + Q+        I+Y+SCNP +L RD  +L     + +
Sbjct: 384 FDKFLIDPPREGALAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRL 443

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 444 KGAGVVNMFPHTSHVESIALFER 466


>gi|241668875|ref|ZP_04756453.1| 23S rRNA 5-methyluridine methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877407|ref|ZP_05250117.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254843428|gb|EET21842.1| RNA methyltransferase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 449

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 156/383 (40%), Gaps = 41/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH------YRMRAEFHIWH-- 53
             +L     + Q+  K   L   +             EP+       YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLLNQLKYIGQGVEPQNILEPLRTTKTEGYRNKARLGVRYVN 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
             + +     ++  +    ID     + L+   + ++ + I    + +  + Q++     
Sbjct: 147 KKEKILVGFRERNGRFLADIDSCKVLNPLVGEKLTQIASFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           +  A++     R L+    E   +L+       Y I L  +   T   + R Y  E   V
Sbjct: 206 TRPALIV----RHLEPFVNEDLEKLKAFGLENGYWIYLQSKGPDT---IFRLYPQE--DV 256

Query: 174 AGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
             + L Y+ +         N FTQ N  IN  M++  +   +  + D +++L+CG GNF+
Sbjct: 257 EPKKLSYQPVAGINIGFEPNDFTQVNNDINKKMIKRAIDLLEISENDSIIDLFCGLGNFT 316

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L ++++   V+ VE  +  V  A+   A N+++NVK     +    ++   +  FN    
Sbjct: 317 LPISQYAKTVIGVEGEQTMVGRAKETAANNNISNVKFY---AANLFESFEDKEWFN---- 369

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTI 341
               ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL     + +
Sbjct: 370 ----NFEYNKMLLDPPRAGAQEVCSNIEKFDVERIVYVSCDTATLARDAGILVNHKGYKL 425

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + D FP+T H+E   +  +
Sbjct: 426 VSAGVMDMFPHTMHVESIAVFEK 448


>gi|323967294|gb|EGB62717.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M863]
 gi|327253646|gb|EGE65275.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           STEC_7v]
          Length = 375

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 138/373 (36%), Gaps = 39/373 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
            +QL+ K   L+ ++  F V             +R +A+  +    +     M  +    
Sbjct: 22  PEQLSAKTADLKNLLADFSVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTP 81

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQSDQAIVTLIY 123
           ++      +      + A +   +A   L P      R +L  I    SQSD  ++    
Sbjct: 82  EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFV 141

Query: 124 HR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA 174
            R       L  A      +L   L      IQ +  A    +T+I L      + L   
Sbjct: 142 LRSETKLAQLRKALPWLQAQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE---QQALAER 197

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
              +       SF Q N  +   +        + +    + +L+CG G F L  A    +
Sbjct: 198 FNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ 257

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +  +EIA  ++  A+ + A   +  ++   + S +F  A                    +
Sbjct: 258 LTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA---------------QGEVPE 302

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+       +    P  I+Y SCN  ++ +D+  LS  + IER+ LFD FP
Sbjct: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIRELS-GYRIERVQLFDMFP 361

Query: 352 YTRHMECGVLLVR 364
           +T H E   LLV+
Sbjct: 362 HTAHYEVLTLLVK 374


>gi|256827042|ref|YP_003151001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum
           DSM 15641]
 gi|256583185|gb|ACU94319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cryptobacterium curtum
           DSM 15641]
          Length = 444

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 128/382 (33%), Gaps = 48/382 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIH--YRMRAEFHIWHDGDDLYH 60
           YE QL  K + +   ++     N       ++  R+      YR + E  +  D      
Sbjct: 84  YETQLEAKRENITAQLVRIGGINSKQADNLVEACRASKQQMSYRNKIEMAVGRDKAGRLA 143

Query: 61  IMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATI--------RLEPLLRAKLFQIDYLT 111
           + F +Q + E + +D     +  +      +   +                 L+++   +
Sbjct: 144 LGFRRQDSHELIAVDRCPLATRHLERAPKALRGALRFLAGGNEHTTDDNPLGLYRVGVRS 203

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-----KTKICLDRDY 166
           S+   +    ++ +         A  L   L A      L            ++   + +
Sbjct: 204 SERTGSTEIALWTKPGVFPRAAAARTLSSTLKATSIVRVLAYEGKQRSIKGVEVLAGKGF 263

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSL 225
             E L        YR    SF Q N      ++  V+          + +LY G G F+L
Sbjct: 264 WQETLAR----FTYRISAPSFFQVNTAQAEQLISLVIEGLDITETSHVADLYSGAGTFTL 319

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA     V+AVE A  SV   R N     V        S++E                 
Sbjct: 320 PLADRAGEVIAVESASSSVRDLRRNAETAGVWVDVRGGDSARELA--------------- 364

Query: 286 DIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIE 342
             H      + VDPPR+GL +             + Y+SC P +  RD++ L+   +T+ 
Sbjct: 365 --HMGHLDALVVDPPRAGLTEAAIAGIAQAQPARLAYVSCEPATWARDVARLADYGYTLT 422

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+   D FP T H E   +  R
Sbjct: 423 RVTPVDLFPQTYHCELVSIFSR 444


>gi|221195076|ref|ZP_03568132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC
           49626]
 gi|221184979|gb|EEE17370.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium rimae ATCC
           49626]
          Length = 452

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 139/438 (31%), Gaps = 93/438 (21%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM----LAFQVPNLQI-FRSEPIHYRMRAEFHIW-HDG 55
               L   Y  QL  K  ++ +++      F V    I    EP  +R +A         
Sbjct: 16  GCEWLSVPYPIQLKRKQQQVVELLGPLGEKFGVSVEDIRGMREPRAFRHKAATPFAPGAR 75

Query: 56  DDLYHIMFDQQTKERMRIDYF----MPGSLLIN-------ALMIEMMATIRLEPLLRAKL 104
             +    +   T   +  +           ++N          +      R   +LR  +
Sbjct: 76  GRVRSGFYAAGTHRIVTCEACLVEDPRARDILNDVARLASRFNVRAYDEDRGRGILRHAV 135

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            +  Y T   D+ ++TL+ +       RE    L   LH     I L     +T   L R
Sbjct: 136 IRTGYAT---DEMLLTLVANGQRLPHEREFISTL-QRLHPEITGIVLNVNQRRTNAILGR 191

Query: 165 D----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI----------- 209
           +         +        +     SF Q N      +    L    G+           
Sbjct: 192 ETRVLAGAATMHDKLLNCTFEIGPTSFYQTNPEQTEVLYRLALEGVFGVCEKSNDERLSS 251

Query: 210 -----------------------------------QGDLLELYCGNGNFSLVLARHFD-- 232
                                                 +L+ YCG G   +  A+     
Sbjct: 252 GNSNCHTSRDDADFPSSGSSNCHTSRDRADSLSGCPLRILDAYCGTGTIGICAAKEAGSR 311

Query: 233 ----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
                ++ V+  + ++  A+ N  AN V+  + V   +  F     +             
Sbjct: 312 GIPVELIGVDQVENNIAMAKRNARANAVS-ARFVCDDATRFIAQEAK------------R 358

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS-ILSTTHTIERLA 345
              +  + +DPPR+G     +  V+  A   ++Y+SCN  +  RDL  +L++ +  ER+ 
Sbjct: 359 GAPYDVVVLDPPRAGSTPTFLKAVEQLAPKRVVYVSCNVVTQARDLEVLLASGYKPERIV 418

Query: 346 LFDQFPYTRHMECGVLLV 363
             D FP+T+H+E  VLL 
Sbjct: 419 PVDMFPHTKHVETVVLLS 436


>gi|148377925|ref|YP_001256801.1| putative RNA methyltransferase [Mycoplasma agalactiae PG2]
 gi|148291971|emb|CAL59363.1| Hypothetical RNA methyltransferase [Mycoplasma agalactiae PG2]
          Length = 446

 Score =  210 bits (535), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 146/378 (38%), Gaps = 31/378 (8%)

Query: 2   SGTLLIDQ--YEQQLAEKVDRLRQMMLA--FQVPNLQIFRSE-PIHYRMRAEFHIWHDGD 56
           SG+  +    Y  QL  K + ++Q+          L I +S+    YR +      +  +
Sbjct: 80  SGSAPLANISYSNQLEFKENFVKQLFKRNIHYTDILPILKSDYEWRYRNKLLLFTKNVQN 139

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK---LFQIDYLTSQ 113
            +   ++++ +   +  D +   S     ++I +   I      +     L  I    S 
Sbjct: 140 TIKIGLYEKNSHNLIEQDSYDLVSNEAENVLIWLSKNINKYDCFKNVKNALTSITLRESY 199

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            ++ I+         D  ++    +       +  + ++          ++ Y+ +++  
Sbjct: 200 VNKKIMLYFTASKAFDLSKQFVNDIAKEFENIETIMVIVNDKVVYSYLSEKSYLIDKIG- 258

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD 232
                 ++   NSF Q N+     +   +L      +  + L+ YCG G  SL LA+   
Sbjct: 259 ---KFSFKYNWNSFFQINSNQTEKLYLLLLDNLNLDKSKVVLDAYCGIGTISLFLAQKAK 315

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V  +EI K +V  A+ N   N + N + +                   +K ID  + + 
Sbjct: 316 KVYGLEIVKEAVINAKENALDNSIYNTEFISGDV---------------IKTIDSINEKI 360

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
            T+ VDPPRSGL    +  +       I YISCNP ++CRD+  L    + +  L   D 
Sbjct: 361 DTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCRDIDQLIKAGYELSFLRPCDM 420

Query: 350 FPYTRHMECGVLLVRKPS 367
           F  T H+E   +L  K +
Sbjct: 421 FSQTYHIEMVAVLKLKDA 438


>gi|237803172|ref|YP_002888366.1| rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
 gi|231274406|emb|CAX11201.1| rRNA methyltransferase [Chlamydia trachomatis B/Jali20/OT]
          Length = 396

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 149/394 (37%), Gaps = 46/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55
             +    +Y   L  K   L  +     +P+  I      S  +  R + EF  +   DG
Sbjct: 16  GCSSPQMEYASSLKTKELALHNLFAPL-IPSQNILPVIPCSPLLRGRNKMEFSFYQTVDG 74

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQI 107
           +     +   + K  + I   +        ++    +     P        L +  L  I
Sbjct: 75  EKTLGFISPSKPKRGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLNKGSLCTI 134

Query: 108 DYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------- 157
                   +D  I+     R             + +L      I  I    K        
Sbjct: 135 TVRVGNISNDFMIILTTSGREEFAVPLNIIQEWQQSLLDSGLPITSIFWEEKLSARNSPT 194

Query: 158 ---TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDL 213
              T       ++ ++L++ GR+ ++     SF QP +     +++ +        +  L
Sbjct: 195 TFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIKEFIDPCGEETL 254

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LYCG G   ++LA +  +++ VE+   +V +A+ NI  N V+ +++    +K+F +  
Sbjct: 255 LDLYCGAGIIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVD-MEVFLEDAKQFCKRN 313

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
                                + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++
Sbjct: 314 ENLP-------------SPDIVVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQE 360

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            S+L    + + R+   DQFP+T H+E  VLL R
Sbjct: 361 CSVLVEQGYQLRRMQPIDQFPHTNHLENIVLLER 394


>gi|297587111|ref|ZP_06945756.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC
           53516]
 gi|297575092|gb|EFH93811.1| 23S rRNA (uracil-5-)-methyltransferase [Finegoldia magna ATCC
           53516]
          Length = 404

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 144/371 (38%), Gaps = 46/371 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
             ++    YE++L  K + +    Q +    V ++ I  +   +YR + +  +    ++ 
Sbjct: 73  GCSMQDITYEKELEIKKNSVLNKLQRIAKLDVKDVDILTNAEYYYRNKVDLKV----ENG 128

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
               ++++T    +I      S  IN +                    I++L +Q    +
Sbjct: 129 KLGYYNRKTHNLTQISTCKIASKAINQM--------------------INWLENQDLNGV 168

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
             +      +D  +     L D L      ++ I          D  Y  ++       L
Sbjct: 169 SEIKIRSNYNDEIQISMDYLSDQLLENLKSVESIVEIYAKNKNFDLIYRKKQFVDKIGDL 228

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
            +     SF Q N      + +           D +L+LYCG G  ++ +  + +  + V
Sbjct: 229 SFIISPKSFFQVNKYNTSLLYDTAKQMMNAEANDRILDLYCGIGTTTMYI-GNGNNTIGV 287

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+ K +V+ A  N   N++ +++ +   S+     + +E               F  I V
Sbjct: 288 EVVKDAVKDANENKKLNNLESIQFIEEKSENVVGKLTQE--------------HFDIILV 333

Query: 298 DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354
           DPPR G+D+  V  +       ++YISC+P +L RDL +L+     +  + L D F  T 
Sbjct: 334 DPPRKGMDEKVVDAIIKSTAKKLVYISCDPATLARDLKMLTENGFAVIDVKLVDMFAKTM 393

Query: 355 HMECGVLLVRK 365
           H+E  VL+ RK
Sbjct: 394 HVESVVLMSRK 404


>gi|71906490|ref|YP_284077.1| 23S rRNA (uracil-5-)-methyltransferase [Dechloromonas aromatica
           RCB]
 gi|91207804|sp|Q47HS4|RUMA_DECAR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|71846111|gb|AAZ45607.1| 23S rRNA m(5)U-1939 methyltransferase [Dechloromonas aromatica RCB]
          Length = 432

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 134/373 (35%), Gaps = 27/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              +   +   Q+A K   L   +        +      + EP  YR RA   +      
Sbjct: 74  GCAMQHMEPSAQVAAKQRVLEDSLWHIGRIRPETMLPPIQGEPWGYRHRARLAVRRVSKS 133

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     + ++     I         ++AL++ M   +     +  ++ ++D    +  
Sbjct: 134 GGMLIGFHEWRSSYIADIRSCAILPPHVSALLMPMRE-LFAALSIAERIREVDVAVGEHC 192

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-RLTVA 174
            A++     R+LD         L D +        L  +   T              T+ 
Sbjct: 193 TALLL----RILDPLTPADERLLCDFVDRNDVVFYLQPKGPDTAFRFYPSGGPRLSYTLP 248

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              L +      FTQ N  +N  ++   L        + + +++CG GNF+L +AR    
Sbjct: 249 EFGLEFDFKPTDFTQVNHAVNRVLVRRALRLLDPQPSERIADMFCGLGNFTLPIARSGAT 308

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VE +   V   R + AAN +           EF  A   E     L  +     RF 
Sbjct: 309 VIGVEGSAALVRRGRESAAANGL-------ADHVEFGVANLFECTEQSLAALG----RFD 357

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
            + +DPPR G  +    + + A   I+Y+SCNP +L RD ++L     +        + F
Sbjct: 358 KMLIDPPREGAVELVRAIGKDAPKRIVYVSCNPGTLARDAAVLVTEKGYRFVSAGAVNMF 417

Query: 351 PYTRHMECGVLLV 363
           P+T H+E   +  
Sbjct: 418 PHTAHVESIAVFE 430


>gi|325124548|gb|ADY84071.1| 23S rRNA methyltransferase [Acinetobacter calcoaceticus PHEA-2]
          Length = 463

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 150/375 (40%), Gaps = 27/375 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDD 57
             ++     ++Q+  K + L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQIRLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKP 157

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
              IM   +     R+      S+L   L   +     L   L+ K        ++ D  
Sbjct: 158 DRLIM-GFREHHSNRLTSIHSCSVLDKNLSNSLPELRTLLQSLKGKAHIGHVELAKGDNE 216

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  L+ H  ++        +L+     + +Q+ L  +  ++   +D +    RL  A   
Sbjct: 217 ISLLVRH--VEKLNNSDVNQLKQFALHKGWQLYLQPKGPESIHRIDDEQGALRLHYAFER 274

Query: 178 LI--YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR- 233
               +      FTQ NA +N  M++      +   G+ +L+L+CG GNFSL LAR     
Sbjct: 275 FNVNFAFSPLDFTQVNATVNEQMVQLACELLQLQPGEKVLDLFCGLGNFSLPLARCVGES 334

Query: 234 --VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE ++  V+ A  N   N +         S++ T+        N+          
Sbjct: 335 GQVVGVEGSEEMVQRATANAKCNSLVQATFF---SQDLTKDFSHHSWANQ---------G 382

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
           F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ D 
Sbjct: 383 FDALLIDPPRAGAYEIMQYVSNFGAKRIVYVSCNPATLARDAGVLVQYGYQLKKAAVMDM 442

Query: 350 FPYTRHMECGVLLVR 364
           F +T H+E   L  +
Sbjct: 443 FTHTEHVESIALFEK 457


>gi|262280996|ref|ZP_06058779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257896|gb|EEY76631.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           calcoaceticus RUH2202]
          Length = 463

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 149/375 (39%), Gaps = 27/375 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDD 57
             ++     ++Q+  K   L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQIRLKQSVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKP 157

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
              IM   +     R+      S+L   L   +     L   L+ K        ++ D  
Sbjct: 158 DRLIM-GFREHHSNRLTSIHSCSVLDKNLSNSLPELRTLLQSLKGKAHIGHVELAKGDHE 216

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  L+ H  ++        +L+     + +Q+ L  +  ++   +D +    RL  A   
Sbjct: 217 ISLLVRH--VEKLNNSDVNQLKQFALDKGWQLYLQPKGPESIHRIDDENGASRLHYALER 274

Query: 178 LI--YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR- 233
               +      FTQ NA +N  M++      +   G+ +L+L+CG GNFSL LAR     
Sbjct: 275 FNVNFAFSPLDFTQVNATVNEQMVQLACELLQLQSGEKVLDLFCGLGNFSLPLARCVGES 334

Query: 234 --VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE ++  V+ A  N   N +         S++ T+        N+          
Sbjct: 335 GQVVGVEGSEEMVQRATANAKCNSLVQATFF---SQDLTKDFSHHSWANQ---------G 382

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
           F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ D 
Sbjct: 383 FDALLIDPPRAGAYEIMQYVSNFGAKRIVYVSCNPATLARDAGVLVQYGYQLKKAAVMDM 442

Query: 350 FPYTRHMECGVLLVR 364
           F +T H+E   L  +
Sbjct: 443 FTHTEHVESIALFEK 457


>gi|297748873|gb|ADI51419.1| tRNA (Uracil-5-) -methyltransferase [Chlamydia trachomatis D-EC]
 gi|297749753|gb|ADI52431.1| tRNA (Uracil-5-) -methyltransferase [Chlamydia trachomatis D-LC]
          Length = 430

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 150/394 (38%), Gaps = 46/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55
             +    +Y   L  K   L  +     +P+  I      S  +  R + EF  +   DG
Sbjct: 50  GCSSPQMEYASSLKTKELALHNLFAPL-IPSQNILPVIPCSPLLRGRNKMEFSFYQTVDG 108

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQI 107
           +     +   + K+ + I   +        ++    +     P        L +  L  I
Sbjct: 109 EKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLNKGSLCTI 168

Query: 108 DYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------- 157
                   +D  I+     R             + +L      I  I    K        
Sbjct: 169 TVRVGNISNDFMIILTTSGREEFAVPLNIIQEWQQSLLDSGLPITSIFWEEKLSARNSPT 228

Query: 158 ---TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDL 213
              T       ++ ++L++ GR+ ++     SF QP +     +++ +        +  L
Sbjct: 229 TFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIKEFIDPCGEETL 288

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LYCG G   ++LA +  +++ VE+   +V +A+ NI  N V+ +++    +K+F +  
Sbjct: 289 LDLYCGAGIIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVD-MEVFLEDAKQFCKRN 347

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
                                + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++
Sbjct: 348 ENLP-------------SPDIVVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQE 394

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            S+L    + + R+   DQFP+T H+E  VLL R
Sbjct: 395 CSVLVEQGYQLRRMQPIDQFPHTNHLENIVLLER 428


>gi|15605475|ref|NP_220261.1| rRNA methyltransferase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789483|ref|YP_328569.1| rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|237805093|ref|YP_002889247.1| rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|7404497|sp|P55137|Y742_CHLTR RecName: Full=Uncharacterized RNA methyltransferase CT_742;
           AltName: Full=Protein HOM1
 gi|6578112|gb|AAC68337.2| rRNA Methyltransferse [Chlamydia trachomatis D/UW-3/CX]
 gi|76168013|gb|AAX51021.1| rRNA methyltransferase [Chlamydia trachomatis A/HAR-13]
 gi|231273393|emb|CAX10308.1| rRNA methyltransferase [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436289|gb|ADH18463.1| rRNA methyltransferase [Chlamydia trachomatis G/9768]
 gi|296437218|gb|ADH19388.1| rRNA methyltransferase [Chlamydia trachomatis G/11222]
 gi|296438148|gb|ADH20309.1| rRNA methyltransferase [Chlamydia trachomatis G/11074]
 gi|297140649|gb|ADH97407.1| rRNA methyltransferase [Chlamydia trachomatis G/9301]
          Length = 396

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 150/394 (38%), Gaps = 46/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55
             +    +Y   L  K   L  +     +P+  I      S  +  R + EF  +   DG
Sbjct: 16  GCSSPQMEYASSLKTKELALHNLFAPL-IPSQNILPVIPCSPLLRGRNKMEFSFYQTVDG 74

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQI 107
           +     +   + K+ + I   +        ++    +     P        L +  L  I
Sbjct: 75  EKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLNKGSLCTI 134

Query: 108 DYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------- 157
                   +D  I+     R             + +L      I  I    K        
Sbjct: 135 TVRVGNISNDFMIILTTSGREEFAVPLNIIQEWQQSLLDSGLPITSIFWEEKLSARNSPT 194

Query: 158 ---TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDL 213
              T       ++ ++L++ GR+ ++     SF QP +     +++ +        +  L
Sbjct: 195 TFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIKEFIDPCGEETL 254

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LYCG G   ++LA +  +++ VE+   +V +A+ NI  N V+ +++    +K+F +  
Sbjct: 255 LDLYCGAGIIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVD-MEVFLEDAKQFCKRN 313

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
                                + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++
Sbjct: 314 ENLP-------------SPDIVVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQE 360

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            S+L    + + R+   DQFP+T H+E  VLL R
Sbjct: 361 CSVLVEQGYQLRRMQPIDQFPHTNHLENIVLLER 394


>gi|52424295|ref|YP_087432.1| 23S rRNA 5-methyluridine methyltransferase [Mannheimia
           succiniciproducens MBEL55E]
 gi|115305730|sp|Q65W13|RUMA_MANSM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|52306347|gb|AAU36847.1| TrmA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 440

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 142/362 (39%), Gaps = 30/362 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           E Q   K   L + +L  Q   ++       E   YR R    +  DG      +  +Q 
Sbjct: 99  EMQREAKQKALFRRLLKLQPEGIEFMPMIVGEAFGYRRRVRLSMLFDGKLKRLEIGFRQK 158

Query: 68  K--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
              + + I+        +N ++ ++ A +      +  L  I+ + + +  A++     +
Sbjct: 159 NSAQIVHIEQCEVIEPALNKILSKLTALLSRFSQPKN-LGHIELVAADNGVAMLLRYSGK 217

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
           L +         L D     +  + L       +I     Y           L  +    
Sbjct: 218 LTE----NDRTLLLDFAVREELMLFLQDDEKTEQI-----YGQPPFYQLADNLQLQFDIR 268

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q N+ +N  M+   L      + D +L+L+CG GNF+L L+R     + +E     V
Sbjct: 269 DFIQVNSLLNQRMITAALDWLDVQKQDHVLDLFCGMGNFTLPLSRRVKSAVGIEGISAMV 328

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E A+ N   N   NV+  R    +               D    +  F  I +DPPR+G 
Sbjct: 329 EKAKANAERNQCQNVQFYRADLDQ------------NFADEVWATEPFNKILLDPPRTGA 376

Query: 305 DDATVGMVQAY-PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD   +L++ + ++++A+ D FP+T H+E   L 
Sbjct: 377 AFALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRVKKVAMIDMFPHTGHLESITLF 436

Query: 363 VR 364
            +
Sbjct: 437 EK 438


>gi|115351806|ref|YP_773645.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|115281794|gb|ABI87311.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia ambifaria AMMD]
          Length = 484

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 136/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        + +F         YR RA   + +    
Sbjct: 120 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETVFAPIHGPSWGYRYRARLTVRNVAKK 179

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 180 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 238

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  D   E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 239 TALVLRVLEPINAD--DEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEFG 296

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 297 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREV 354

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E +      A  N   N V+                     F    D       F  
Sbjct: 355 MGIEGSDTLTTRALANARENGVDGHTTFAC-----------RNLFEVTGDDLRALGAFDK 403

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 404 FLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 463

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 464 GVVNMFPNTSHVESIALFER 483


>gi|166154084|ref|YP_001654202.1| rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|166154959|ref|YP_001653214.1| rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335289|ref|ZP_07223533.1| rRNA methyltransferase [Chlamydia trachomatis L2tet1]
 gi|165930072|emb|CAP03555.1| rRNA methyltransferase [Chlamydia trachomatis 434/Bu]
 gi|165930947|emb|CAP06509.1| rRNA methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 396

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 149/394 (37%), Gaps = 46/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55
             +    +Y   L  K   L  +     +P+  I      S  +  R + EF  +   DG
Sbjct: 16  GCSSPQMEYASSLKTKELALHNLFAPL-IPSQNILPVIPCSPLLRGRNKMEFSFYQTVDG 74

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQI 107
           +     +   + K+ + I   +        ++    +     P        L +  L  I
Sbjct: 75  EKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLNKGSLCTI 134

Query: 108 DYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------- 157
                   +D  I+     R             + +L      I  I    K        
Sbjct: 135 TVRVGNISNDFMIILTTSGREEFAVPLNIIQEWQQSLLDSGLPITSIFWEEKLSARNSPT 194

Query: 158 ---TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDL 213
              T       ++ ++L++ GR+ ++     SF QP +     +++ +        +  L
Sbjct: 195 TFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIKEFIDPCGEETL 254

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LYCG G   ++LA +  +++ VE+   +V +A+ NI  N V+ +++    +K+F +  
Sbjct: 255 LDLYCGAGTIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVD-MEVFLEDAKQFCKRN 313

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
                                + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++
Sbjct: 314 ENLP-------------SPDIVVIDPPRCGMQNKALKYLLRMAPKKIVYVSCNPLTQIQE 360

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            S+L    + +  +   DQFP+T H+E  VLL R
Sbjct: 361 CSVLVEQGYQLRHMQPIDQFPHTNHLENIVLLER 394


>gi|170692346|ref|ZP_02883509.1| RNA methyltransferase, TrmA family [Burkholderia graminis C4D1M]
 gi|170142776|gb|EDT10941.1| RNA methyltransferase, TrmA family [Burkholderia graminis C4D1M]
          Length = 475

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 134/383 (34%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIW--HDG 55
             ++       Q+A K   L   +        + +FR        YR RA   +    + 
Sbjct: 111 GCSMQHLDIRAQVAVKQRVLEDNLQHLAKLRPETVFRPIHGPAWGYRYRARLAVRFLPEK 170

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +R   +   ++ Q++     S 
Sbjct: 171 GGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIY-DRMPQLELAVGSS- 228

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
              VT    R L+         LR+     K Q  +      T   L      +D  L  
Sbjct: 229 ---VTAFVVRNLEPLTAADEQVLREFADEHKVQFWIQPGGPDTVTPLYPLDVQLDYTLPE 285

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 286 YDIRMPFK--PTDFTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARIAR 343

Query: 233 RVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E +      A  N   N    +      +  E T    R                
Sbjct: 344 EVVGIEGSDVLTSRALANAELNGVAAHTSFACRNLFEVTADDMRAL------------GH 391

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G       + +            I+Y+SCNP +L RD  +L     + +
Sbjct: 392 FDKFLVDPPREGALAVAKALAEIAQSGDGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRL 451

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + + FP+T H+E   L  R
Sbjct: 452 VGAGVVNMFPHTSHVESIALFER 474


>gi|169797170|ref|YP_001714963.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           AYE]
 gi|215484633|ref|YP_002326868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii AB307-0294]
 gi|301345773|ref|ZP_07226514.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           AB056]
 gi|301511169|ref|ZP_07236406.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           AB058]
 gi|301594976|ref|ZP_07239984.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           AB059]
 gi|332856909|ref|ZP_08436318.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6013150]
 gi|226725372|sp|B7H018|RUMA_ACIB3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|226725376|sp|B0V5N2|RUMA_ACIBY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|169150097|emb|CAM87991.1| 23S rRNA (Uracil-5-)-methyltransferase(23S
           rRNA(M-5-U1939)-methyltransferase) [Acinetobacter
           baumannii AYE]
 gi|213985913|gb|ACJ56212.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii AB307-0294]
 gi|332726963|gb|EGJ58468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6013150]
          Length = 463

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 155/377 (41%), Gaps = 31/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWH--DG 55
             ++     ++Q+  K + L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQIHLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQ 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D L     +  +     I         ++  + E+   ++    L+ K        ++ D
Sbjct: 158 DRLILGFREHHSNRLTSIHTCSVLDKKLSDNLPELRNLLQ---SLKGKAHIGHVELAKGD 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--V 173
             I  L+ H  ++        +LR     + +Q+ L  +  ++   +D +    RL   +
Sbjct: 215 HEISLLVRH--IEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYAL 272

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + +      FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR   
Sbjct: 273 NAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVG 332

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ VE ++  V+ A  N   N++         S++ T+        N+        
Sbjct: 333 AKGQVVGVEASEEMVQRATDNAKRNNLVQASFF---SQDLTKDFSHHSWANQ-------- 381

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ 
Sbjct: 382 -GFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVM 440

Query: 348 DQFPYTRHMECGVLLVR 364
           D F +T H+E   L  +
Sbjct: 441 DMFTHTEHVESIALFEK 457


>gi|330986720|gb|EGH84823.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 451

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANAVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQA-LGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 215 --VATAVLLRHTAPLAEADLTLLQAFCSKHGAQLWLHGEGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAKEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|116070578|ref|ZP_01467847.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. BL107]
 gi|116065983|gb|EAU71740.1| 23S rRNA methyltransferase/RumA [Synechococcus sp. BL107]
          Length = 469

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 72/392 (18%), Positives = 141/392 (35%), Gaps = 48/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR-----SEPIHYRMRAEFHIWHDGD 56
             TL   +   Q + K   L+Q M                 S    YR RA   +  +GD
Sbjct: 90  GCTLQSLKESAQNSWKFSSLQQTMQRIGGIEATPQPLLADNSRAFGYRNRALIPLKREGD 149

Query: 57  DL-YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR------LEPLLRAK-LFQID 108
                  +  ++   + +++       ++ L+  +   +          L++AK L  + 
Sbjct: 150 GRLRAGYYRPRSHRIVNLNHCPVLDPRLDQLIEPIKQDLDSTGWAADHDLIQAKGLRHLG 209

Query: 109 YLTSQ-SDQAIVTLIYHR-------LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
                 S + ++TLI           L + W +    ++      + +   +    +T +
Sbjct: 210 LRLGHHSGEVLITLISSHDRYPGLLELAEEWMDRWPMVKGVCLNLQPKPNNLVLGAQTLL 269

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG--IQGDLLELYC 218
               + + E        +  +    +F Q N      ++  +          G +++ YC
Sbjct: 270 VAGSETIAEEFC----GIHLQLSSTTFFQINTPQAERIVRVLCDWLSTDMGSGTVVDAYC 325

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRRER 277
           G G  SL LA     V+ +E+ + SV+ A  N   N++    +       +  +A     
Sbjct: 326 GIGTISLPLAAKGFDVIGLELHQGSVDQALLNAMRNNLSKQCRFRAGDVVDLLEA----- 380

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL 335
                       +    + +DPPR GLD   +  +   P   + Y+SC+P +  RDL +L
Sbjct: 381 ----------ALFGADALVLDPPRRGLDARVIQTILDTPPQRLAYLSCDPATQARDLKML 430

Query: 336 ---STTHTIERLALFDQFPYTRHMECGVLLVR 364
              +  + +++    D FP T H+E   LL R
Sbjct: 431 MEPAGPYRLKKHQPIDFFPQTTHLESLALLER 462


>gi|29840640|ref|NP_829746.1| RNA methyltransferase [Chlamydophila caviae GPIC]
 gi|50401542|sp|Q821Q5|Y883_CHLCV RecName: Full=Uncharacterized RNA methyltransferase CCA_00883
 gi|29834990|gb|AAP05624.1| RNA methyltransferase, TrmA family, putative [Chlamydophila caviae
           GPIC]
          Length = 401

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 152/399 (38%), Gaps = 46/399 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP-IHYRMRAEFHIW--HDGD 56
             +     Y   L  K   L ++      P+  L +   +P +  R + EF  +   +G 
Sbjct: 15  GCSSPQSAYADSLKAKEQILHELFAPIFPPSEILPVIPCDPVLRGRNKMEFSFFQTKEGK 74

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--------RAKLFQID 108
                +   + K+ + I   +        ++    A     P L        +  L  + 
Sbjct: 75  KSLGFITPTKPKQGVPITECLMIHEDTMDILNLTRAWWDNHPELTAYYPPFNKGSLCTLT 134

Query: 109 YLTSQSDQAIVTLIYHRLLDD--AWRECAIRLRDALHARKYQIQLIGRANKTK------- 159
                 ++ ++ ++     ++    +      ++AL      I  I    K         
Sbjct: 135 VRIGSPERKLMVILTTSAREEYAVEKGIIEEWKNALINSSLPIVSIIWEEKVSAKNAPTY 194

Query: 160 ----ICLDRDYVDERLTVAG--RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
               +     ++ + LT+     + ++     SF QP +     ++E           + 
Sbjct: 195 FRSHLIHGEPFIKQTLTLPKDGNSGVFHVRPRSFFQPQSLQGAKIIEIAKEFMNPQGSET 254

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           LL+LYCG G   ++L+ +  +V+ VEI   ++++A+ NI  N   N +++    +K F  
Sbjct: 255 LLDLYCGAGTIGIMLSAYVKKVIGVEIVPDAIDSAKENILINKKENLIEVYLEDAKTFC- 313

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPD-SL 328
                    R +D          + +DPPR G+ +  +  +       I+YISCNP    
Sbjct: 314 --------RRHQDCP----PPDVVVIDPPRCGIQNKVLKYLLRIFPKKIIYISCNPKIQF 361

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
               S++S  + I+++   DQFP++ H+E  +LL R+ S
Sbjct: 362 EECCSLISAGYHIKKVQPLDQFPHSPHLENIILLEREDS 400


>gi|330866046|gb|EGH00755.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 451

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANAVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQA-LGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 215 --VATAVLLRHTAPLAEADLALLQAFCSKHGAQLWLHGDGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAKEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|255311574|ref|ZP_05354144.1| rRNA methyltransferase [Chlamydia trachomatis 6276]
 gi|255317875|ref|ZP_05359121.1| rRNA methyltransferase [Chlamydia trachomatis 6276s]
          Length = 396

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 151/394 (38%), Gaps = 46/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55
             +    +Y   L  K   L  +     +P+  I      S  +  R + EF  +   DG
Sbjct: 16  GCSSPQMEYASSLKTKELALHNLFAPL-IPSQNILPVIPCSPLLRGRNKMEFSFYQTVDG 74

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP--------LLRAKLFQI 107
           +     +   + K+ + I   +        ++    +     P        L +  L  I
Sbjct: 75  EKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYYPPLNKGALCTI 134

Query: 108 DYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------- 157
                   +D  I+     R             + +L      I  I    K        
Sbjct: 135 TVRVGNISNDFMIILTTSGREEFAVPLNIIQEWQQSLLDSGLPITSIFWEEKLSARNSPT 194

Query: 158 ---TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDL 213
              T       ++ ++L++ GR+ ++     SF QP +     +++ +        +  L
Sbjct: 195 TFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIKEFIDPCGEETL 254

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LYCG G  S++LA +  +++ VE+   +V +A+ NI  N V+ +++    +K+F +  
Sbjct: 255 LDLYCGAGIISILLAPYVKKIIGVELVPDAVASAQENIQLNSVD-MEVFLEDAKQFCKRN 313

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
                                + +DPPR G+ +  +  +   A   I+Y+SCNP +  ++
Sbjct: 314 ENLP-------------SPDIVVIDPPRCGMQNRALKYLLRMAPKKIVYVSCNPLTQIQE 360

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            S+L    + + R+   DQFP+T H+E  VLL R
Sbjct: 361 CSVLVEQGYQLRRMQPIDQFPHTNHLENIVLLER 394


>gi|269123350|ref|YP_003305927.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis
           DSM 12112]
 gi|268314676|gb|ACZ01050.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis
           DSM 12112]
          Length = 473

 Score =  210 bits (534), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 152/398 (38%), Gaps = 46/398 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEP-IHYRMRAEFHIWHDGD 56
                +  YE Q+  K   L+ +       +++    + +SE   +YR +          
Sbjct: 79  GCDFAMMNYEAQIKNKSMILKDVFKRIAKEDIKEDIYVEKSENIFNYRNKVAEPFIKING 138

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLIN----------------ALMIEMMATIRLEPLL 100
           ++    F +++ E    D     + +                      ++   I     L
Sbjct: 139 EIKTGFFKKKSHEIFVSDEVNLRANIATIVLDKLLLKLNKYRGTKKEYKVFNDITNTGFL 198

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           +  + + + +   ++  +V ++  +   +  +E  I L +     K  I +  +     +
Sbjct: 199 KTCVIRNNDM---NEVMLVLVVNGKSSINRLKETLIELYNENDEIK-SIYISVKNKLDNV 254

Query: 161 CLDRDYVDER----LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLE 215
               +++       +      + ++   NSF Q N      +    L      +  ++++
Sbjct: 255 IFGEEFIKISGSSYIVENLFGINFKIYPNSFFQINKKQTEKLYLEALNFLGDYKDKNVID 314

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            + G G  ++++++  ++V+ +EI   SV++A      N++ NV+ +    +E    +  
Sbjct: 315 AFSGTGTIAMIMSKKANKVIGLEIVPESVKSAIKTSNENNIKNVEFLVGKVEETISRV-- 372

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS 333
                      + +     I  DPPR G+D + +  V       ++YISC+P +L RD+ 
Sbjct: 373 -----------LENNNIDYIVFDPPRKGIDKSILEKVNESGINKLVYISCDPTTLARDIG 421

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           +L    + +E +  FD FP T H+E  VLL +     H
Sbjct: 422 VLKEYGYKLEFIKGFDMFPQTHHIETVVLLSKLKIKKH 459


>gi|33863009|ref|NP_894569.1| RNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
 gi|50401516|sp|Q7V7K6|Y737_PROMM RecName: Full=Uncharacterized RNA methyltransferase PMT_0737
 gi|33634926|emb|CAE20912.1| RNA methyltransferase, TrmA family [Prochlorococcus marinus str.
           MIT 9313]
          Length = 465

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 142/385 (36%), Gaps = 51/385 (13%)

Query: 13  QLAEKVDRLRQMMLAFQVPN--LQIFRSE---PIHYRMRAEFHIWHDGDDLYH-IMFDQQ 66
           Q   K   LRQ++L     +  ++   ++    + YR RA   ++ + +   H   + + 
Sbjct: 102 QTLLKQGHLRQILLRLGQLDHKIEPIMTDYNRALGYRNRALIPLYRNSEGQLHMGYYRRG 161

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKLFQIDYLTSQSD 115
           + + + ++        I+  +  +   ++ +             LR    +I   T Q  
Sbjct: 162 SHQIIDLNRCPVLDRGIDQYLASIKDDLQQQNWPADSDLSSGEGLRHLGIRIGQKTKQVL 221

Query: 116 QAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
             +V+    L         W      +R      + Q   +    +T +      ++E  
Sbjct: 222 ITLVSSTTQLSGLHQQAKEWYSRWPEVRGITLNIQRQRNNLVLGQETILLAGDLEIEE-- 279

Query: 172 TVAGRTLIYRQIENSFTQPNAGINV----HMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
                 L       +F Q N          ++EW+  A+  I  ++++ YCG G  SL +
Sbjct: 280 --HFYNLSLLLSTTTFFQVNTLQAERIVSKLIEWLSTASLDI--NIIDAYCGIGTISLPI 335

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A     V+ +E+   ++  A  N   N ++NV  +                         
Sbjct: 336 AATGYHVIGLELHAEAITQANKNALRNSLDNVSFLCGDVSLLLAK--------------- 380

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL---STTHTIE 342
              R   + +DPPR GLD   +  + +     + Y+SC+P +L RDL  L   +  + I+
Sbjct: 381 KLQRNDVLVLDPPRKGLDQMVIKTILSIQPERVAYLSCDPATLARDLKQLIVPNGPYQID 440

Query: 343 RLALFDQFPYTRHMECGVLLVRKPS 367
            L   D FP T H+EC  LL R  S
Sbjct: 441 ELQPIDFFPQTMHIECLALLTRISS 465


>gi|331651874|ref|ZP_08352893.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M718]
 gi|331050152|gb|EGI22210.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M718]
          Length = 375

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    KT+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQAQLPQ-LKVITVNIQPVHMAIMEGKTEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|206560252|ref|YP_002231016.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           cenocepacia J2315]
 gi|198036293|emb|CAR52189.1| putative 23S rRNA (uracil-5-)-methyltransferase [Burkholderia
           cenocepacia J2315]
          Length = 465

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 135/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + +    
Sbjct: 101 GCSMQHLDMRAQVAVKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+     + 
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSTV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  D   E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 220 TALVLRVLEPINAD--DEALLRAFADEHNVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 277

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 278 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREV 335

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E +      A  N   N V+                     F    D       F  
Sbjct: 336 MGIEGSDTLTTRALANARENGVDGHTTFAC-----------RNLFEVTGDDLRALGAFDK 384

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 385 FLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 445 GVVNMFPNTSHVESIALFER 464


>gi|239500714|ref|ZP_04660024.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           AB900]
          Length = 463

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 155/377 (41%), Gaps = 31/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWH--DG 55
             ++     ++Q+  K + L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQIRLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQ 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D L     +  +     I         ++  + E+   ++    L+ K+       ++ D
Sbjct: 158 DRLILGFREHHSNRLTSIHTCSVLDKKLSDSLPELRNLLQ---SLKGKVHIGHVELAKGD 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--V 173
                L+ H  ++        +LR     + +Q+ L  +  ++   +D +    RL   +
Sbjct: 215 HETSLLVRH--IEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYAL 272

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + +      FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR   
Sbjct: 273 NAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVG 332

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ VE ++  V+ A  N   N++         S++ T+        N+        
Sbjct: 333 AKGQVVGVEASEEMVQRATDNAKRNNLVQASFF---SQDLTKDFSHHSWANQ-------- 381

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ 
Sbjct: 382 -GFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVM 440

Query: 348 DQFPYTRHMECGVLLVR 364
           D F +T H+E   L  +
Sbjct: 441 DMFTHTEHVESIALFEK 457


>gi|195927327|pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
           (Uracil-54, C5)-Methyltransferase In Complex With
           S-Adenosyl-L- Homocysteine
          Length = 425

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 150/378 (39%), Gaps = 57/378 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
             TL    Y+ QL  K  +L++++  F    +++  S     +R R +  I  DG     
Sbjct: 89  GCTLQHLNYDYQLEFKRKKLKRIL-GF---EVEVVPSPKIFGHRNRIDLAITKDG----- 139

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQI 107
           I F ++ K  + + ID            +  +   I  E +           LR  + + 
Sbjct: 140 IGFRERGKWWKIVDIDEXPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLRE 199

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
              T +     VT   +      + +          +       +   +  +    ++++
Sbjct: 200 GKFTEEVMVNFVTKEGNLPDPTNYFDFDSIYW----SVNRSKSDVSYGDIERF-WGKEFI 254

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
            ERL      + Y    NSF Q N+   V+++  V    +G +  +L++Y G G F + L
Sbjct: 255 RERL----DDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYL 308

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+    V   +  + ++E AR N+  N+V+                    EF    D ++
Sbjct: 309 AKRGFNVKGFDSNEFAIEMARRNVEINNVD-------------------AEFEVASDREV 349

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLA 345
               F T+ VDPPR+GL    V  +       I+Y+SCNP++  RD+ +L   + I+ + 
Sbjct: 350 SVKGFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIV 407

Query: 346 LFDQFPYTRHMECGVLLV 363
             D FP+T H+E    LV
Sbjct: 408 ALDMFPHTPHVELVAKLV 425


>gi|301335320|ref|ZP_07223564.1| rRNA methyltransferase [Chlamydia trachomatis L2tet1]
 gi|301336306|ref|ZP_07224508.1| rRNA methyltransferase [Chlamydia muridarum MopnTet14]
          Length = 396

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 75/396 (18%), Positives = 150/396 (37%), Gaps = 50/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DG 55
             +    +YE  L  K   L  +     +P+ +I      S  +  R + EF  +   DG
Sbjct: 16  GCSSPQTEYEISLRAKELALHHIFAPL-IPSQKILPVIPCSPLLRGRNKMEFSFYQTADG 74

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA------------K 103
           +     +   + K+ + I   +        ++          P L A             
Sbjct: 75  EKTLGFISPSKPKKGIPITECLMIDERAMDILNYTRVWWSAHPELSAYYPPLNKGSLCTL 134

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------ 157
             ++  ++  +D  I+     R      ++     +  L      I  I    K      
Sbjct: 135 TIRVGNVS--NDFMIILTTSGREEFAVSQDVIQEWQRGLLNLGLPITSIFWEEKLSARNS 192

Query: 158 -----TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
                +       ++ ++L++ GR+ ++     SF QP +     ++  +         +
Sbjct: 193 PTTFRSSHLYGEPFLKQQLSLEGRSNLFHIRPRSFFQPQSRQAEKIILTIKDFISPTGKE 252

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            LL+LYCG G   ++L+ +  +V+ VE+   ++ +A  NI  N   N+++    +K F +
Sbjct: 253 TLLDLYCGAGTIGILLSPYVKKVIGVELVPDAIASAHENIQLNSA-NMEVFLEDAKRFCK 311

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
                            +     + VDPPR G+ +  +  +   A   I+Y+SCNP +  
Sbjct: 312 RNE-------------QAPAPDVVIVDPPRCGMQNKALKYLLRIAPKKIVYVSCNPLTQI 358

Query: 330 RDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            + + L    + ++R+   DQFP+T H+E  VLL +
Sbjct: 359 HECTTLVEQGYKLQRMQPIDQFPHTHHLENVVLLEK 394


>gi|303232296|ref|ZP_07318994.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium vaginae
           PB189-T1-4]
 gi|302481619|gb|EFL44681.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium vaginae
           PB189-T1-4]
          Length = 458

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 125/377 (33%), Gaps = 37/377 (9%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQ---------VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
              YE QL+ K   +   +             +    I   +   YR + E   + D   
Sbjct: 98  HLMYEAQLSAKQSIVSDALSRVAHLSQETIQTLLKPIIPAKKQWGYRNKIELSTYTDNGT 157

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----LEPLLRAKLFQIDYLTS 112
           L   MFD QTK  + +     G+ +I          ++      +  L     +    T 
Sbjct: 158 LCIGMFDVQTKRFVPVSQCPLGNEMITKAAKAAQGALQFVARSQDIGLERVGIRASVRTR 217

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
             + A+ T                 + +A    +   +   R  K  + ++R   +    
Sbjct: 218 SLEVALWTKASSFPRSYVANMLNSAIPEATSVVRVLTKGQRRVRK-VVGVERLSGEGSWR 276

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
                   R    SF Q +      ++  VL A          +LYCG G F+L LA   
Sbjct: 277 EQLAGRTMRISAPSFFQVHTRAAETLISCVLDALCVKPTEKAFDLYCGAGTFTLPLADAC 336

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE    S+   +  I      N+  V   S            F      D     
Sbjct: 337 MNVVGVEAQGTSINDLKRCIERESYTNITAVCGDS------------FREFPHTDA---- 380

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT--HTIERLALF 347
              I VDPPR+GL    +  + A     I Y+SC+P +L RD+        +T   +   
Sbjct: 381 -DVIVVDPPRAGLAPEVIAKLNAQKARAIAYVSCDPITLSRDIQRFCAAGVYTPVSIVPV 439

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP + H+EC  LL R
Sbjct: 440 DVFPQSFHVECVTLLER 456


>gi|269468672|gb|EEZ80308.1| RNA methyltransferase [uncultured SUP05 cluster bacterium]
          Length = 438

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 142/372 (38%), Gaps = 26/372 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             +      E Q+  K   L+  ++        I     + E   YR +A   + +    
Sbjct: 84  GCSFQHLSSEDQIIAKGKWLKDALMQQAKTEPIIWLEPLQVESWGYRRKARLGVRYVAKK 143

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           + +     ++++     +         +   + ++   I     +++++ QI+   ++ D
Sbjct: 144 EKVLVGFREKKSSFITNMSRCEVLHPSLGDHLEDLAQCIEQL-SVKSQVPQIEVAIAEQD 202

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             ++     R L+    +    L D  H   +          T   LD+  V    +   
Sbjct: 203 TVLIL----RHLEPLNAKDEQILADCAHDLGFTWYTQSGGLDTVKPLDKSVVL-TYSHPN 257

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +    +   FTQ N  +N  M+   L   +  + D +++L+CG GNF+L +ARH   V
Sbjct: 258 HNIEMEFLPTDFTQVNFKLNQKMINLALELLELNESDEVIDLFCGLGNFTLPIARHVKHV 317

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     +E A+YN   N++ NV   +    +        R              +  
Sbjct: 318 VGVEGDLGLIERAKYNADQNNITNVDFYKADLFQEVDGFEWFR-----------GKNYNK 366

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
             +DP RSG  +    + +     ++Y+SCNP +L RD + L    + ++   + D FP 
Sbjct: 367 ALLDPARSGALEIVEFLPKLGIERLVYVSCNPATLARDTARLIELGYKLQTAGVMDMFPQ 426

Query: 353 TRHMECGVLLVR 364
           T H+E   L  +
Sbjct: 427 TAHVESIALFTK 438


>gi|260435757|ref|ZP_05789727.1| 23S rRNA (uracil-5-)-methyltransferase [Synechococcus sp. WH 8109]
 gi|260413631|gb|EEX06927.1| 23S rRNA (uracil-5-)-methyltransferase [Synechococcus sp. WH 8109]
          Length = 465

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 140/397 (35%), Gaps = 52/397 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIWHD-G 55
             TL       Q+  K  +++Q M         P   +  +E    YR RA   +  D  
Sbjct: 90  GCTLQRLDDAAQIRWKAKQIQQTMQRIGGIDVAPAPTLVNAERCFGYRNRALIPLKRDQN 149

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKL 104
             L    F  +T + + +++       ++AL+  +   +                LR   
Sbjct: 150 GRLKAGYFRSKTHKIVNLNHCPVLDPRLDALVEPLKQDLDAGGWPADHDLLESQGLRHLG 209

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            ++   T      +++    L    +L  +W E    ++      + +   +     T  
Sbjct: 210 LRLSIATGDVLITLISSHAQLRGLEVLAQSWVERWPAVKGVCLNLQPKANNLVLGRTTHC 269

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN----VHMLEWVLAATKGIQGDLLEL 216
                 ++E+       L       +F Q N          + +W+L    G    +++ 
Sbjct: 270 LAGVPTIEEQFCGIKLAL----SSTTFVQVNTPQAERIVQRLTDWLLVQCAG--ARVVDA 323

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRR 275
           YCG G  +L L++    V  +E+   SVE AR N   N + +          +   A   
Sbjct: 324 YCGVGTIALPLSKAGFNVQGLELNPDSVEQARLNAMHNGLSSRCAFDAGDVADLLAA--- 380

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL--YISCNPDSLCRDLS 333
                       H    + + +DPPR GLD   V  +   P  +  Y+SC+P +  RDL 
Sbjct: 381 ------------HLDDCQALVLDPPRRGLDRCVVDSILERPPAVLAYLSCDPATQARDLK 428

Query: 334 IL---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            L   S  + +E L   D FP T H+E   LL R  S
Sbjct: 429 ALLAPSGPYELEMLQPVDFFPQTTHLESLALLKRVSS 465


>gi|309389700|gb|ADO77580.1| (Uracil-5)-methyltransferase [Halanaerobium praevalens DSM 2228]
          Length = 389

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 137/391 (35%), Gaps = 47/391 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEP--IHYRMRAEFHIW--HDG 55
             +     Y +QL  K +++ ++      +  N +   + P    YR   EF       G
Sbjct: 15  GCSSQEVPYLEQLETKKNKILEIFKEKNIECENFEGILASPDIYEYRNNMEFSFGDLKKG 74

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAK 103
             L   M  +  + + + +D  +        ++  ++   R               LR  
Sbjct: 75  GKLQLGMHPRGKRFDVITVDQCLLVDQDFRNILSTILNYCRKNEFKKYHIKLRTGFLRNL 134

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    ++T    +       E          L   +           +   
Sbjct: 135 VIRKGINTGEVIANLITTSQVKHDFSDLTESLKSLDLKGELVGFVQTINDDFSDQVKCED 194

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
            KI   R+Y  ++L        ++    SF Q N      +           Q  ++ +L
Sbjct: 195 LKIYHGRNYFYDKLLKN----KFKINSLSFFQTNTKGAELLYAEAKKYISNAQNKIVYDL 250

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG G  +  +A   D++  +EI K +   A  N   N+V N K +              
Sbjct: 251 YCGAGTIAQSIAAGADQIYGIEIDKNAANQASENADLNNVKNTKYLAGDV---------- 300

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                LK I+        + +DPPR G++   +  +     P ILYISCNP SL  DL  
Sbjct: 301 -----LKKINEIEKAADLLIIDPPRPGINPKALKKIAKIGAPEILYISCNPKSLAIDLKE 355

Query: 335 LSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           L    + +E+    D FP+T+H+E   LL +
Sbjct: 356 LENYNYKLEKFKAVDMFPHTKHVEMISLLKK 386


>gi|331662271|ref|ZP_08363194.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA143]
 gi|331060693|gb|EGI32657.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA143]
          Length = 375

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVGEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQSLAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|293414137|ref|ZP_06656786.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B185]
 gi|291434195|gb|EFF07168.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B185]
          Length = 375

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKTLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|161650991|ref|YP_001119583.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           vietnamiensis G4]
          Length = 465

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 133/382 (34%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + +    
Sbjct: 101 GCSMQHLDMRAQVAIKQRVLEDNLWHLSKLRAEAMYAPIHGPSWGYRYRARLTVRNVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+    +    LR        Q  L  +   T          +D  L  
Sbjct: 220 TALVL----RVLEPINADDEALLRAFADEHNVQFWLQPKGPDTVAPFYPLDVALDYTLPE 275

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 276 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAR 333

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++     A  N   N V+                     F    D       F
Sbjct: 334 EVMGIEGSETLTTRALANARENGVDGHTTFAC-----------RNLFEVTGDDLRALGAF 382

Query: 293 KTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIE 342
               +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++
Sbjct: 383 DKFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLK 442

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
              + + FP T H+E   L  R
Sbjct: 443 GAGVVNMFPNTSHVESIALFER 464


>gi|225874142|ref|YP_002755601.1| 23S rRNA (uracil-5-)-methyltransferase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225793976|gb|ACO34066.1| 23S rRNA (uracil-5-)-methyltransferase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 427

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 82/363 (22%), Positives = 136/363 (37%), Gaps = 29/363 (7%)

Query: 11  EQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           ++QL  K   L++ +       +P +Q+   EP  YR R   H+  +          +Q+
Sbjct: 82  DEQLRMKAAILQETLERARLKDLPEIQVIAGEPWGYRNRIRLHV--ETKPFALGYRREQS 139

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
              + ++     +  +   M  ++     E  L     +++  T  + + ++  +Y    
Sbjct: 140 HVTLPVEECRIAAPALVRAMQVLVEQC--EAALAGWAREVELFTDDATELLLISVYADAA 197

Query: 128 DDAWRE----CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
               +E       RL+ AL            A K             LT     L YR  
Sbjct: 198 TAKMQERLDALWERLQGALPEAAGCAAFALPAGKGFARRVATAGGPSLTYGAGGLQYRVS 257

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             +F Q N  +   M+  V  A  G      +LY G G F+  L   F+ V AVE A  S
Sbjct: 258 AGAFFQVNRFLVDRMVAAVCEARAGATA--WDLYAGVGLFAKALVPRFEHVTAVEAAPES 315

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   R N         ++V  ++ +F +   +E                  +  DPPR+G
Sbjct: 316 VADLRVNA-----PGARVVAATTLDFLRKAAQE--------AGKRKAAPDLVVADPPRAG 362

Query: 304 LDDATVGMVQA--YPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
           L      ++      HI Y+SC+P +L RDL ++L + +    L L D FP T H+E   
Sbjct: 363 LGKDVTALLGKIRPRHITYVSCDPATLSRDLFALLQSGYRFRSLHLLDMFPQTFHVETIA 422

Query: 361 LLV 363
            L 
Sbjct: 423 QLT 425


>gi|145632582|ref|ZP_01788316.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           3655]
 gi|144986777|gb|EDJ93329.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           3655]
          Length = 438

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 85/363 (23%), Positives = 153/363 (42%), Gaps = 30/363 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ- 66
           E Q   K   L + +   Q   +    +   +   YR R    +W + +     M  +Q 
Sbjct: 98  EMQRKAKESALFKRLSKLQSKPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQK 157

Query: 67  -TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y +
Sbjct: 158 NTNDLVTVQSCEVAESAINHLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYMK 215

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L +  R   ++      A + ++ L  +++K    +++ Y D         +       
Sbjct: 216 NLAEIDRTLLLKF-----AEQEKLMLFLQSDKG---IEQIYGDAPYYQFSDGIKLHFDIR 267

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            F Q N  +N  M+   L   +  Q D +L+L+CG GNF+L+LA+     + +E     V
Sbjct: 268 DFIQVNRALNERMVNTALDWLELNQQDCVLDLFCGMGNFTLLLAKRVKSAVGIEGVFEMV 327

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A  N   N + N++  +       Q+   +   N+          F  I +DPPRSG 
Sbjct: 328 QKAAQNATRNQIKNIEFFQAD---LDQSFVEQPWANQ---------SFNKILLDPPRSGA 375

Query: 305 DDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLL 362
             A   + +     ILY+SCNP +L RD  IL    + IE+ ++ D FP+T H+E   L 
Sbjct: 376 AFALNALCELKSEKILYVSCNPATLVRDAEILRDFGYKIEKSSVIDMFPHTGHLESITLF 435

Query: 363 VRK 365
             K
Sbjct: 436 TTK 438


>gi|257791001|ref|YP_003181607.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243]
 gi|317488284|ref|ZP_07946850.1| hypothetical protein HMPREF1023_00548 [Eggerthella sp. 1_3_56FAA]
 gi|325830894|ref|ZP_08164278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
 gi|257474898|gb|ACV55218.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243]
 gi|316912624|gb|EFV34167.1| hypothetical protein HMPREF1023_00548 [Eggerthella sp. 1_3_56FAA]
 gi|325487301|gb|EGC89744.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
          Length = 461

 Score =  209 bits (533), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 132/392 (33%), Gaps = 50/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQ------IFRSEPIHYRMRAEFHIW 52
                   Y+ QL  K   +   +     F     +      +       YR + E    
Sbjct: 90  GCPWQHLSYDAQLEAKRANVAAALERTAKFGRERAEELVRPCLPSKRQWGYRNKLELGAA 149

Query: 53  HDGDDLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYL 110
            D    + + F +    +             I      +   +   +      +F++   
Sbjct: 150 MDERGTFQLGFHREGAHDIASPGACPLAHDAIAKAPKALRGALRFAQGSADLGIFRVGVR 209

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-----CLDRD 165
            S     +   ++           A  ++ A+ A      +       KI        + 
Sbjct: 210 HSLHTGDLEVALWTSPGSFPRGHIAKTVKSAVKATSIVRVMADPGKARKIKGVETLDGKG 269

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----------LLE 215
             +E+L  A     Y     SF Q N      ++  V+    G  G+          + +
Sbjct: 270 CWEEQLGDA----RYLASAPSFFQVNTAQAEKLIACVIEGLGGRMGEDGPEGLDDLLIAD 325

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LY G G FS+ LA+    VLAVE A  SV   R N   N V+ ++++   +         
Sbjct: 326 LYAGGGTFSVPLAQAGAEVLAVEAAGSSVRDLRRNADMNRVD-LEVIGGDAA-------- 376

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS 333
            RE   L  +D        + VDPPR+GL D  V  + A     + Y+SCNP +  RD++
Sbjct: 377 -RELPELGGLDA-------LVVDPPRAGLADGVVESIAAAAPERVAYVSCNPATWARDVA 428

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
              S  + +  +   D FP T H+E   +  R
Sbjct: 429 RFESQGYRLTSVQPVDMFPQTYHVEVVSVFER 460


>gi|167626443|ref|YP_001676943.1| 23S rRNA 5-methyluridine methyltransferase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167596444|gb|ABZ86442.1| RNA methyltransferase, TrmA family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 449

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 155/383 (40%), Gaps = 41/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH------YRMRAEFHIWH-- 53
             +L     + Q+  K   L   +             EP+       YR +A   + +  
Sbjct: 87  GCSLQHMSTDAQIEHKQQTLLNQLKYIGQRVEPQNILEPLRTTKTEGYRNKARLGVRYVN 146

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
             + +     ++  +    ID     + L+   + ++ + I    + +  + Q++     
Sbjct: 147 KKEKILVGFRERNGRFLAEIDSCKVLNPLVGEKLTQIASFIETLSIYQH-IAQLEIAIDD 205

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
              A++     R L+    E   +L+       Y I L  +   T   + R Y  E   V
Sbjct: 206 IRPALIV----RHLEPFVNEDLEKLKAFGLENGYWIYLQSKGPDT---IFRLYPQE--DV 256

Query: 174 AGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
             + L Y+ +         N FTQ N  IN  M++  +   +  + D +++L+CG GNF+
Sbjct: 257 EPKKLSYQPVAGINIGFEPNDFTQVNNDINKKMIKRAIDLLEISENDSIIDLFCGLGNFT 316

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L ++++   V+ VE  +  V  A+   A N+++NVK     +    ++   +  FN    
Sbjct: 317 LPISQYAKTVIGVEGEQTMVNRAKETAANNNISNVKFY---AANLFESFEDKEWFN---- 369

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL--STTHTI 341
               ++ +  + +DPPR+G  +    + +     I+Y+SC+  +L RD  IL     + +
Sbjct: 370 ----NFEYNKMLLDPPRAGAQEVCSNIEKFDVERIVYVSCDTATLARDAGILVNDKGYKL 425

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + D FP+T H+E   +  +
Sbjct: 426 VSAGVMDMFPHTMHVESIAVFEK 448


>gi|325185750|emb|CCA20230.1| tRNA (uracil5)methyltransferase putative [Albugo laibachii Nc14]
          Length = 798

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 138/378 (36%), Gaps = 51/378 (13%)

Query: 33  LQIFRSEP--IHYRMRAEFHIWHDGDDL-----YHIMFDQQTKERMRIDYFMPGSLLINA 85
            +     P    YR + EF +     D         +F + +         +  S ++  
Sbjct: 428 FESIEPSPVTEGYRNKCEFTLGFSEADQPCVGFRLGLFKKGSVIVSDPGNCINVSPIMKK 487

Query: 86  LMIEMMATIRLE--PLLRAKLFQ-------IDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
           +   +   I     P+   +  +       + + T      +V  +    LDD+ +    
Sbjct: 488 VCEVVQKMITASNFPVFNVETREGVWKQLAVRHSTRTQQLMVVMQVNMSNLDDSQQTNLQ 547

Query: 137 R-----LRDALHARKYQIQLIGRANK-------TKICLDRDYVDERLTVAGRTLIYRQIE 184
           +     L +AL      +Q    ++         K+      + E+L      L +    
Sbjct: 548 KVITDGLVEALDVTSLYMQAYQGSSGGADQNGAVKLLHGNPVITEKL----FDLEFNISP 603

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            +F Q N      +   V    +  +  LL ++ CG G   L  A+   +V+ +EI K +
Sbjct: 604 EAFFQVNTDAAEILYAKVREMVQVNKKTLLYDVCCGTGTIGLCCAKDAGKVIGIEICKAA 663

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            E A  N   N + N+  V   ++E  + + +         +D       T+ +DPPR+G
Sbjct: 664 TEDAERNAILNQIKNISFVNDKAEEVMKDILQTATQYEGTQMD-----SVTVVIDPPRAG 718

Query: 304 LDDATVGMVQAYP---HILYISCNPD-SLCRDLSILSTT---------HTIERLALFDQF 350
           L    +  ++A P    I+Y+SCNP  SL +D ++L                R A  D F
Sbjct: 719 LHYKVLRALRACPVVRRIVYVSCNPTQSLIQDSAMLCGPKTSALVGEAFCPVRAAAVDMF 778

Query: 351 PYTRHMECGVLLVRKPSG 368
           P+T H E  V+  R  SG
Sbjct: 779 PHTPHCEMIVVFERGNSG 796


>gi|148244456|ref|YP_001219150.1| RNA methyltransferase [Candidatus Vesicomyosocius okutanii HA]
 gi|146326283|dbj|BAF61426.1| RNA methyltransferase, TrmA family [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 439

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 146/375 (38%), Gaps = 30/375 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI------FRSEPIHYRMRAEFHIWH-- 53
             +      E Q+  K   L+++         +       F+S    YR +A   I +  
Sbjct: 84  GCSFQNLSSEDQIQIKSRWLKKVFARQAKVEPETWLKSLQFQS--WGYRRKARLGIRYVA 141

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
             D +     ++++     +         I    +E++A       +++ + Q + + S+
Sbjct: 142 KKDKVLIGFRERKSSFITNMSRCEVLHPSIGE-HLEVLANCIERLSIKSSIPQFEVVISE 200

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           S  A++     R L+    +    L D                 +   LD   +    + 
Sbjct: 201 SGIALIL----RHLESLSVKDEKILADCAQELNITFYTQSGGLDSVKPLDEPTIL-TYSH 255

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
           +   +I   +   F Q N  +N  M+   +   +  + D +++L+CG GNF+L +AR+  
Sbjct: 256 SNYNIIMEFLPTDFVQVNFKLNQQMVSLAVELLELNESDKVIDLFCGLGNFTLPIARYAK 315

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E     VE A+YN   N +NNV   R         + +E               +
Sbjct: 316 YVVGIEGDLGLVERAKYNAEKNSINNVDFYRSD-------LCKEVVGFEW----FKGKTY 364

Query: 293 KTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQF 350
               +DP RSG  +    + +     ++Y+SCNP +L RD L ++    T+E   + D F
Sbjct: 365 NKALIDPSRSGAIEIVELLPKLGVTRLVYVSCNPATLARDTLKLIKLGFTLETAGVIDMF 424

Query: 351 PYTRHMECGVLLVRK 365
           P T H+E   L V++
Sbjct: 425 PQTSHVESIALFVKR 439


>gi|170733177|ref|YP_001765124.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           cenocepacia MC0-3]
 gi|169816419|gb|ACA91002.1| RNA methyltransferase, TrmA family [Burkholderia cenocepacia MC0-3]
          Length = 465

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 132/380 (34%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + +    
Sbjct: 101 GCSMQHLDMRAQVAVKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+     + 
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSTV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R+L+    +  + LR      K Q  L  +   T        V    T+  
Sbjct: 220 TALVL----RVLEPINADDEVLLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPE 275

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 276 FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREV 335

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E +      A  N   N V+                     F    D       F  
Sbjct: 336 MGIEGSDTLTTRALANARENGVDGHTTFAC-----------RNLFEVTGDDLRALGAFDK 384

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 385 FLIDPPREGALAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 445 GVVNMFPNTSHVESIALFER 464


>gi|269102464|ref|ZP_06155161.1| RNA methyltransferase TrmA family [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162362|gb|EEZ40858.1| RNA methyltransferase TrmA family [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 379

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 148/389 (38%), Gaps = 48/389 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHI---WHDGDD 57
           S  L    Y+QQ+ +K   LR ++   Q    L+  RS    YR +A+  +    H+   
Sbjct: 13  SCPLSSLSYDQQIEKKDQGLRSLLAPCQPQHWLEPVRSATQGYRNKAKMVVLGAAHEPCL 72

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQ 106
               + D+  K  + +         +  L+  +   IR   +           L+  L  
Sbjct: 73  GAVAVVDEDNK-PISLRACPLYPQDMQDLLAALEQWIRTSGIPPYNVNKKKGELKFILLT 131

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKY---QIQLIGRAN---KTKI 160
             +   +     V   ++ +          RL  A  A K     IQ +  A      +I
Sbjct: 132 RSHKAGEFMIRFVLRSHNAM--PRIEANLERLMTAFPAIKVVSVNIQPVHMARLEGDEEI 189

Query: 161 CLDR-DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
            L +  ++DE+L              SF Q N  +   +        + I+   + +L+C
Sbjct: 190 FLTQAQHLDEQLNDVPLV----IRPKSFFQTNPDVAAKLYATARQWVREIKPSAMWDLFC 245

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G F+L        V  +EI   ++ +A+ +  A  + N+    + S  F+        
Sbjct: 246 GVGGFALHCVSPETDVTGIEIEPEAIASAQRSAQAMGITNLDFAALDSTGFSME------ 299

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                    H    + + V+PPR G+ +     +   A  HI+Y SCNP++L  D+  L 
Sbjct: 300 ---------HDTAPELVLVNPPRRGIGEQLCQQLSYFAPKHIIYSSCNPETLAIDIQRL- 349

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +E++  FD FP+T H E  VLL  K
Sbjct: 350 EGYELEKVQWFDMFPHTDHAEVLVLLSHK 378


>gi|222032588|emb|CAP75327.1| 23S rRNA [Escherichia coli LF82]
 gi|312945376|gb|ADR26203.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 375

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 140/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V       S     +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTVDLKNLLADFPVEEWCAPMSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|254173067|ref|ZP_04879741.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
 gi|214033223|gb|EEB74051.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus sp. AM4]
          Length = 418

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 139/378 (36%), Gaps = 47/378 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLY 59
            G L     Y  QL  K     ++         +I  S     +R  + F +  +G  L 
Sbjct: 73  GGCLWQGLNYGAQLELKA----ELFERITGIRAEIKGSPKIWGFRNVSNFIVTTNGAGLK 128

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTSQ-- 113
                      + +      S      +  +   ++   L    L  K   + YL  +  
Sbjct: 129 EYGNPLG---VVDLSECPVFSKKTPEYLRVLRNFLKETGLRPWSLTRKTGDVHYLQVREG 185

Query: 114 --SDQAIVTLIYHRLLDDAWRECAIR---LRDALHARKYQIQLIGRANKTKICLDRDYVD 168
             + + +  LI HR   +   E         D+L+      +      + ++     ++ 
Sbjct: 186 KFTGEVMANLIAHRRPSEETAEAFRDYFSFADSLYWSLKADEGDDPRGEPELVDGNPFIR 245

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           ER+      + Y    NSF Q N+     +L  V   T G    +L+LY G G F + LA
Sbjct: 246 ERIG----DVTYLIHPNSFFQTNSYALELLLRAVENFTDGE--RVLDLYSGVGTFGVYLA 299

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   RV  +EI   +VE A  N   N V N +     ++E                    
Sbjct: 300 KRGFRVEGIEINPFAVEMANRNAKLNGV-NAQFRVGRAEE------------------TP 340

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLS-ILSTTHTIERLAL 346
              + T+ VDPPR GL +A   +V+     ++Y+SCNP +   D    L   + +E   L
Sbjct: 341 IGDYDTVIVDPPRKGLKEAGELLVKSGVERVVYVSCNPKAFKLDYENHLKKAYRVEEAIL 400

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H+E  VLL R
Sbjct: 401 VDMFPHTSHVEAVVLLSR 418


>gi|194433128|ref|ZP_03065410.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae
           1012]
 gi|194418625|gb|EDX34712.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae
           1012]
 gi|320177807|gb|EFW52793.1| 23S rRNA methyluridine methyltransferase [Shigella boydii ATCC
           9905]
 gi|332088882|gb|EGI93994.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella boydii
           5216-82]
 gi|332091027|gb|EGI96117.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae
           155-74]
          Length = 375

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALVERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVMTLLVK 374


>gi|330824966|ref|YP_004388269.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Alicycliphilus
           denitrificans K601]
 gi|329310338|gb|AEB84753.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Alicycliphilus
           denitrificans K601]
          Length = 483

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 132/384 (34%), Gaps = 40/384 (10%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L   +        +            YR RA   + +      +     ++
Sbjct: 107 AQVAMKQRVLEDNLWHLAKVKAETILRPIEGPAWGYRYRARLSVRYVPKKGTVLVGFHER 166

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           +++    +         ++A+++ + A I      R    QI+     +  A+V     R
Sbjct: 167 KSRYIADMQTCKILPPHVDAMLMPLRALIAGMQA-RDTCPQIELACGDAVTALVL----R 221

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L+        RLR        Q  L  +   T   LD         +    +       
Sbjct: 222 HLEPLSDADKDRLRAFAAEHGVQWWLQPKGPDTVHLLDEGGEQLAYGLPDFGITMPFKPT 281

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     VL VE ++  V
Sbjct: 282 DFTQVNPHINRVLVTRALRLLDAREDERVIDWFCGLGNFTLPIATRSREVLGVEGSEALV 341

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             +R N   N         +++  F         F    ++ I         VDPPR G 
Sbjct: 342 ARSRENYQKNQAQRQAGKALAATNFV----ARNLFEMTPEVLIADGAADKWLVDPPREGA 397

Query: 305 ----------DDATVGMVQAYP------------HILYISCNPDSLCRDLSIL--STTHT 340
                       A +G  +A P             I+Y+SCNP +L RD  +L     + 
Sbjct: 398 FALSKALADIHQARLGAAEAPPLPAGHERWQPPRRIVYVSCNPATLARDAGLLVHQAGYR 457

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
                + + FP+T H+E   +  R
Sbjct: 458 CAAAGVVNMFPHTAHVESMAVFER 481


>gi|300114883|ref|YP_003761458.1| TrmA family RNA methyltransferase [Nitrosococcus watsonii C-113]
 gi|299540820|gb|ADJ29137.1| RNA methyltransferase, TrmA family [Nitrosococcus watsonii C-113]
          Length = 446

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 135/374 (36%), Gaps = 29/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW--HDG 55
             +L       QL  K   +R+    F     +            YR +A   +      
Sbjct: 87  GCSLQHLSTVAQLQLKQVTVREQFRHFGGVEPEQWLPPLAGAVWGYRYKARLGVKFVKKK 146

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D +     ++ +     ++        + +L+  +   +        ++ QI+       
Sbjct: 147 DRVLVGFREKGSSLIAALERCEVLHPPVGSLLPAL-GELIASLSCYDRIPQIEVAAGDQS 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +V     R L         +L     A K QI L G   +T   L     + RL+ + 
Sbjct: 206 TGLV----FRHLVPLTTADTEQLMAFGQAHKLQIYLQGGGAETVRLL--WPAEARLSYSQ 259

Query: 176 R-TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              L    +   FTQ N  +N  M++ VLA  +   G+ +L+L+CG GNF+L LA     
Sbjct: 260 FGELEMIFLPTDFTQVNREVNTKMVQQVLALLEIASGERVLDLFCGVGNFTLPLAMAGAE 319

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E     V  AR N A N + NV+                               F 
Sbjct: 320 VVGIEGDAGLVARARANAAHNRLENVRFDVADLNGL-----------EWTHHAWAREGFS 368

Query: 294 TIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
              +DPPRSG   A   M +     I+YISCNP +L RD   L     + +    + D F
Sbjct: 369 KALLDPPRSGALLAVQQMSKLRVQRIVYISCNPATLARDAGELVNRQGYRLRYAGVIDMF 428

Query: 351 PYTRHMECGVLLVR 364
           P+T H+E   L  R
Sbjct: 429 PHTTHVETLALFER 442


>gi|329902596|ref|ZP_08273158.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548743|gb|EGF33385.1| 23S rRNA (uracil-5-)-methyltransferase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 434

 Score =  209 bits (532), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 141/376 (37%), Gaps = 29/376 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              +       Q+A K   L   +        ++           YR RA   + +    
Sbjct: 70  GCAMQHLDAAAQVAIKQRVLEDNLWHIGKVRPRLMLRPIYGPTWGYRYRARLSVRNVPRK 129

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   I    ++  ++ QI+    + +
Sbjct: 130 GGVLVGFIEKKSSYLTDMTSCDILPPKVSALLVPLRELIAALSIVE-QIPQIELAVGEGN 188

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
             +VT++  R++    R   + L+    LH   + +Q  G  +          +   L  
Sbjct: 189 DGVVTVLVLRIMAPLSRADEVLLKAFADLHQIVWWLQAAGPESAVPYYPANQSLQYSLPE 248

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G T+ ++     FTQ N  IN  ++   L        + + +L+CG GNF+L +A    
Sbjct: 249 FGITMPFK--PTDFTQVNHQINRVLVARALRLLDAQPDERIADLFCGLGNFTLPIATQAR 306

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E +    + A  N   N V +             +      F+      +    F
Sbjct: 307 AVVGIEGSTALTQRAMDNARFNGVQD-----------KTSFGCRNLFDITGADLVALGYF 355

Query: 293 KTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL-STTHTIERLAL 346
             + +DPPR G       + +  P      I+Y+SCNP +L RD  +L +  + + +  +
Sbjct: 356 DRLLIDPPRDGAMALCEALAELQPAQKPRRIVYVSCNPATLARDAQLLVAGGYVLSQAGV 415

Query: 347 FDQFPYTRHMECGVLL 362
            + FP+T H+E   + 
Sbjct: 416 VNMFPHTAHVESMAVF 431


>gi|134139005|gb|ABO54748.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia vietnamiensis
           G4]
          Length = 434

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 136/383 (35%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + +    
Sbjct: 70  GCSMQHLDMRAQVAIKQRVLEDNLWHLSKLRAEAMYAPIHGPSWGYRYRARLTVRNVAKK 129

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 130 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 188

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+    +    LR        Q  L  +   T          +D  L  
Sbjct: 189 TALVL----RVLEPINADDEALLRAFADEHNVQFWLQPKGPDTVAPFYPLDVALDYTLPE 244

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 245 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLAR 302

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E ++     A  N   N V+ +      +  E T    R                
Sbjct: 303 EVMGIEGSETLTTRALANARENGVDGHTTFACRNLFEVTGDDLRAL------------GA 350

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 351 FDKFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRL 410

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP T H+E   L  R
Sbjct: 411 KGAGVVNMFPNTSHVESIALFER 433


>gi|331013485|gb|EGH93541.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 451

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 146/371 (39%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L         + +      + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLIGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQA-LGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 215 --VATAVLLRHTAPLAEADLALLQAFCSKHGAQLWLHGEGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAKEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAISNDLHNVQFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|319762887|ref|YP_004126824.1| RNA methyltransferase, trma family [Alicycliphilus denitrificans
           BC]
 gi|317117448|gb|ADU99936.1| RNA methyltransferase, TrmA family [Alicycliphilus denitrificans
           BC]
          Length = 483

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 132/384 (34%), Gaps = 40/384 (10%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L   +        +            YR RA   + +      +     ++
Sbjct: 107 AQVAMKQRVLEDNLWHLAKVKAETILRPIEGPAWGYRYRARLSVRYVPKKGTVLVGFHER 166

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           +++    +         ++A+++ + A I      R    QI+     +  A+V     R
Sbjct: 167 KSRYIADMQTCKILPPHVDAMLMPLRALIAGMQA-RDTCPQIELACGDAVTALVL----R 221

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L+        RLR        Q  L  +   T   LD         +    +       
Sbjct: 222 HLEPLSDADKDRLRAFAAEHGVQWWLQPKGPDTVHLLDEGGEQLAYGLPDFGITMPFKPT 281

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     VL VE ++  V
Sbjct: 282 DFTQVNPHINRVLVTRALRLLDAREDERVIDWFCGLGNFTLPIATRSREVLGVEGSEALV 341

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             +R N   N         +++  F         F    ++ I         VDPPR G 
Sbjct: 342 ARSRENYQKNQAQRQAGKALAATNFV----ARNLFEMTPEVLIADGAADKWLVDPPREGA 397

Query: 305 ----------DDATVGMVQAYP------------HILYISCNPDSLCRDLSIL--STTHT 340
                       A +G  +A P             I+Y+SCNP +L RD  +L     + 
Sbjct: 398 FALSKALADIHQARLGAAEAPPLPAGHERWQPPRRIVYVSCNPATLARDAGLLVHQAGYR 457

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
                + + FP+T H+E   +  R
Sbjct: 458 CAAAGVVNMFPHTAHVESMAVFER 481


>gi|296315101|ref|ZP_06865042.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria
           polysaccharea ATCC 43768]
 gi|296838012|gb|EFH21950.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria
           polysaccharea ATCC 43768]
          Length = 443

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 139/372 (37%), Gaps = 25/372 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDG-D 56
             +L       Q+A K   + + +        +           HYR RA F +  D   
Sbjct: 78  GCSLQHISPTAQVAFKQRMMEEQLERIGKVKPKQILPPIYGHVWHYRDRARFSVSLDKLC 137

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      ++T + + I   M     ++  +  +   ++      +     ++    S+ 
Sbjct: 138 RLKLGFQAKKTNDVVDISSCMLIPKPVSDKLPAIRELLQDLAEEGSVTRFAEFYRG-SEI 196

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLTVA 174
            ++ + +   L         +  D+  +  + + L      ++    +    +   L   
Sbjct: 197 TVLNIAFKSKLRQNEENRIRQWFDSELSDGWHVWLQIGGKVSQPFYPKTDKTLKYTLPEF 256

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G  + +R     FTQ N   N  M+  V+      QG+ + +L+CG GNFSL +A+    
Sbjct: 257 GIEMPFR--PGDFTQINTDTNRLMISRVVKMLDIRQGERVADLFCGLGNFSLPIAKSGAD 314

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E A+  V  AR N   N  +          +F  A      F+  +       RF 
Sbjct: 315 VVGIEGAENLVRRARQNARLNGCDG-------QTDFIAA----NLFDCTEKTVASWGRFD 363

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
            + +DPPRSG  +    +   Y    I+Y+SCNP +L RD  +L    + + +  + + F
Sbjct: 364 KMLIDPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSQAGIMNMF 423

Query: 351 PYTRHMECGVLL 362
             T H E   + 
Sbjct: 424 AQTSHTESVAVF 435


>gi|89897939|ref|YP_515049.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89331311|dbj|BAE80904.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 401

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 151/396 (38%), Gaps = 44/396 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEPI-HYRMRAEFHIW--HDGD 56
             +     Y   L  K   L ++       +  L +   +P+   R + EF  +   +G+
Sbjct: 15  GCSSPQSAYADSLKAKEHILHELFSPIFPSSDILPVIPCDPLLRGRNKMEFSFFQTKEGE 74

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--------RAKLFQID 108
                +   + K+ + I   +        ++          P L        +  L  + 
Sbjct: 75  KSLGFITPTKPKQGVPITDCLMIHEHAMDILNLTRTWWEDHPELTAYYPPFNKGSLCTLT 134

Query: 109 YLTSQSDQAIVTLIYHRLLDD--AWRECAIRLRDALHARKYQIQLIGRANKTK------- 159
                 ++ ++ ++     ++    +E      ++L      I  I    K         
Sbjct: 135 VRIGSPERTLMVILTTSAREEYAVDKEIIEEWMNSLIHSALPIVSIVWEEKVSAINSPTH 194

Query: 160 ----ICLDRDYVDERLTVAG--RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
               +     ++ + LT+     + ++     SF QP +     ++E           + 
Sbjct: 195 FRSHLLYGEPFIKQTLTLPKDGNSGVFHVRPRSFFQPQSLQGAKIIEIAKEFMDPQGCET 254

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   ++L+ +  +V+ VEI   +VE+A+ NI  N   ++  V +  ++    
Sbjct: 255 LLDLYCGAGTIGIMLSTYVKKVIGVEIVPDAVESAKENILINKKEHLMEVHL--EDVKNF 312

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD-SLC 329
            RR ++                + +DPPR G+ +  +  +   +   I+YISCNP     
Sbjct: 313 CRRHQDCP----------PPDVVVIDPPRCGMQNKVLKYLLRISPKKIIYISCNPKIQFK 362

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              S+LS  + I+++   DQFP++ H+E  +LL RK
Sbjct: 363 ECCSLLSAGYRIKKVQPLDQFPHSPHLENIILLERK 398


>gi|325496801|gb|EGC94660.1| 23S rRNA methyluridine methyltransferase [Escherichia fergusonii
           ECD227]
          Length = 375

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 137/373 (36%), Gaps = 39/373 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
            +QL+ K   L+ ++  F V    +        +R +A+  +    +     M  +    
Sbjct: 22  PEQLSAKTADLKNLLADFSVEEWCEPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTP 81

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQSDQAIVTLIY 123
           ++      +      + A +   +A   L P      R +L  I    SQSD  ++    
Sbjct: 82  EDLCDCPLYPSSFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFV 141

Query: 124 HR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA 174
            R       L  A      +L   L      IQ +  A    +T+I L        L   
Sbjct: 142 LRSETKLAQLRKALPWLQAQLPQ-LKVITVNIQPVHMAIMEGETEIYLSEKQA---LAER 197

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
              +       SF Q N  +   +        + +    + +L+CG G F L  A    +
Sbjct: 198 FNDVPLWIRPQSFFQTNPVVASQLYATARDWVQQLPVKHMWDLFCGVGGFGLHCATPDMQ 257

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +  +EIA  ++  A+ + A   +  ++   + S +F  A                    +
Sbjct: 258 LTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA---------------QGEVPE 302

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IER+ LFD FP
Sbjct: 303 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIERVQLFDMFP 361

Query: 352 YTRHMECGVLLVR 364
           +T H E   LLV+
Sbjct: 362 HTAHYEVLTLLVK 374


>gi|107029004|ref|YP_626099.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           cenocepacia AU 1054]
 gi|116689838|ref|YP_835461.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           cenocepacia HI2424]
 gi|254248066|ref|ZP_04941387.1| tRNA (uracil-5-)-methyltransferase/TrmA [Burkholderia cenocepacia
           PC184]
 gi|123179925|sp|Q1BGX9|RUMA_BURCA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|143580671|sp|A0K7U1|RUMA_BURCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|105898168|gb|ABF81126.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia cenocepacia AU
           1054]
 gi|116647927|gb|ABK08568.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|124872842|gb|EAY64558.1| tRNA (uracil-5-)-methyltransferase/TrmA [Burkholderia cenocepacia
           PC184]
          Length = 465

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 135/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + +    
Sbjct: 101 GCSMQHLDMRAQVAVKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+     + 
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSTV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  D   E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 220 TALVLRVLEPINAD--DEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFG 277

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 278 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREV 335

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E +      A  N   N V+                     F    D       F  
Sbjct: 336 MGIEGSDTLTTRALANARENGVDGHTTFAC-----------RNLFEVTGDDLRALGAFDK 384

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 385 FLIDPPREGALAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 445 GVVNMFPNTSHVESIALFER 464


>gi|312144062|ref|YP_003995508.1| (Uracil-5)-methyltransferase [Halanaerobium sp. 'sapolanicus']
 gi|311904713|gb|ADQ15154.1| (Uracil-5)-methyltransferase [Halanaerobium sp. 'sapolanicus']
          Length = 389

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 139/394 (35%), Gaps = 53/394 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEP--IHYRMRAEFHIW--HDG 55
             ++    Y +Q+  K + L ++       +   +     P    YR   EF       G
Sbjct: 17  GCSIQHLDYNEQIKAKQENLLKIFAEEELDIDKFEKIIESPKIFEYRNNMEFSFGDLKKG 76

Query: 56  DDLYHIMFDQQTK-ERMRIDYFMPGSL-------LINALMIE----MMATIRLEPLLRAK 103
             L   M  +  + + + +D  +           +I     E           E  LR  
Sbjct: 77  GKLQLGMHPRGKRYDVVTVDSCILVDQDFRKILNIIIDYCRENNFKKYHVKLREGFLRNL 136

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR---------LRDALHARKYQIQLIGR 154
           + +    T    + IV LI     +  +     R         L   L            
Sbjct: 137 VIRKGINTG---EVIVNLITTSQQNHDFSPLLKRINNLDLKGELVGFLQTINDNFSDQVV 193

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213
             +  +   R Y  ++L        ++    SF Q N      + +      K      +
Sbjct: 194 CEEMIVYQGRKYFYDKLLDK----KFKIDSLSFFQTNTLGAEVLYKEAKKYIKNPDAKTI 249

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LYCG+G  S  +A +  ++  ++I + ++  AR N   N+V+N   +           
Sbjct: 250 YDLYCGSGTISQSIADNAKKIYGIDIDEEAINRARENADLNNVSNTYYIAGDV------- 302

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
                   L+ I++ + +   I +DPPR G++   +  +       ILYISCNP +L RD
Sbjct: 303 --------LEKIEVLAEKPDLIIIDPPRPGINPKALNKIAQTNSKEILYISCNPKTLARD 354

Query: 332 LSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           L       + +++    D FP+T+H+E   LL +
Sbjct: 355 LKEFKLHNYKLQKFKAVDMFPHTKHLEVISLLKK 388


>gi|257094638|ref|YP_003168279.1| TrmA family RNA methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047162|gb|ACV36350.1| RNA methyltransferase, TrmA family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 437

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 141/363 (38%), Gaps = 27/363 (7%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L   +        +   +     P  YR RA   +        +     ++
Sbjct: 84  AQVAAKQRLLEDNLRHIGRITAEQLYAPIYGQPWAYRFRARLSVRFVAKKGGVLVGFHEK 143

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     +         ++A+++ +   I     +R +L QI+    +   A+V  I   
Sbjct: 144 KSSYVADMRQCEILPAHLSAMLLPLRELI-GRMSIRDRLPQIEVAVGERMTALVLRILES 202

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-LDRDYVDERLTVAGRTLIYRQIE 184
           L  DA  E  +R     H   + +Q  G A   + C +D   +   L        +    
Sbjct: 203 L--DAADEVLLRDFADRHQVVFYLQPQGPATAYRFCPVDGPRLSYLLPDFAVEHFF--SP 258

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             FTQ N  IN  ++   L+      G+ + +++CG GNF+L +AR    V+ +E +   
Sbjct: 259 TEFTQVNHAINRVLVRRALSLLDPRPGERIADMFCGLGNFTLPIARAGASVVGIEGSAEL 318

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A  N  AN +++    R++             F    +      RF  + +DPPR G
Sbjct: 319 VGRAAENATANGLHDRVEYRVA-----------NLFTATTESIGALGRFDKMLIDPPREG 367

Query: 304 LDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360
             +    +    P  I+YISC+P +L RD +IL     + +    + + FP T H+E   
Sbjct: 368 ALELVKSLGADGPGRIVYISCSPATLARDAAILVSQKGYRLRGAGVVNMFPNTSHVESIA 427

Query: 361 LLV 363
           L  
Sbjct: 428 LFE 430


>gi|218704283|ref|YP_002411802.1| 23S rRNA methyluridine methyltransferase [Escherichia coli UMN026]
 gi|293404163|ref|ZP_06648157.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Escherichia coli
           FVEC1412]
 gi|298379946|ref|ZP_06989551.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300901222|ref|ZP_07119324.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           198-1]
 gi|226725406|sp|B7NAK5|RUMB_ECOLU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|218431380|emb|CAR12258.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli UMN026]
 gi|291428749|gb|EFF01774.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Escherichia coli
           FVEC1412]
 gi|298279644|gb|EFI21152.1| TrmA family RNA methyltransferase [Escherichia coli FVEC1302]
 gi|300355347|gb|EFJ71217.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           198-1]
          Length = 375

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALADRFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVNHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|24112229|ref|NP_706739.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri 2a str.
           301]
 gi|30062341|ref|NP_836512.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri 2a str.
           2457T]
 gi|110804856|ref|YP_688376.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri 5 str.
           8401]
 gi|50401545|sp|Q83S14|RUMB_SHIFL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|123048499|sp|Q0T8K2|RUMB_SHIF8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|24051076|gb|AAN42446.1| putative enzyme [Shigella flexneri 2a str. 301]
 gi|30040586|gb|AAP16318.1| putative enzyme [Shigella flexneri 2a str. 2457T]
 gi|110614404|gb|ABF03071.1| putative enzyme [Shigella flexneri 5 str. 8401]
 gi|281600182|gb|ADA73166.1| 23S rRNA (uracil-5-)-methyltransferase [Shigella flexneri 2002017]
 gi|313650234|gb|EFS14646.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri 2a
           str. 2457T]
 gi|332759770|gb|EGJ90073.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           4343-70]
 gi|332760447|gb|EGJ90736.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           2747-71]
 gi|332763075|gb|EGJ93320.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           K-671]
 gi|332768030|gb|EGJ98216.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           2930-71]
 gi|333006661|gb|EGK26160.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           VA-6]
 gi|333006961|gb|EGK26456.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           K-218]
 gi|333008832|gb|EGK28292.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           K-272]
 gi|333020141|gb|EGK39411.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           K-227]
 gi|333020973|gb|EGK40231.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella flexneri
           K-304]
          Length = 375

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKTLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|187923829|ref|YP_001895471.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           phytofirmans PsJN]
 gi|187715023|gb|ACD16247.1| RNA methyltransferase, TrmA family [Burkholderia phytofirmans PsJN]
          Length = 472

 Score =  209 bits (531), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 135/382 (35%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIW--HDG 55
             ++       Q+A K   L   +        + +FR        YR RA   +    + 
Sbjct: 108 GCSMQHLDIRAQVAVKQRVLEDNLQHLAKLRPETVFRPIHGPSWGYRYRARLAVRFLPEK 167

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +R   +   ++ Q++     S 
Sbjct: 168 GGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIY-DRMPQLELAVGSSV 226

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R L+         LRD     K Q  L      T          +D  L  
Sbjct: 227 TALVV----RNLEPITAADEQVLRDFADQHKVQFWLQPGGPDTVAPFYPLDAQLDYTLPE 282

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 283 YGIRMPFK--PTDFTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISK 340

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++     A  N   N V               +      F    D       F
Sbjct: 341 EVVGIEGSEVLTARALANAELNGVAGHT-----------SFACRNLFEITADDMRALGHF 389

Query: 293 KTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIE 342
               +DPPR G       +V+            I+Y+SC P +L RD  +L     + + 
Sbjct: 390 DKFLIDPPREGALAVAKALVEIAQSGDGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLV 449

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
              + + FP+T H+E   L  R
Sbjct: 450 GAGVVNMFPHTSHVESIALFER 471


>gi|160947332|ref|ZP_02094499.1| hypothetical protein PEPMIC_01266 [Parvimonas micra ATCC 33270]
 gi|158446466|gb|EDP23461.1| hypothetical protein PEPMIC_01266 [Parvimonas micra ATCC 33270]
          Length = 448

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 156/375 (41%), Gaps = 38/375 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLA---FQVPNLQIFR-SEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +YE++L  K       +      ++ +++I      ++YR + E  + ++  +L + + +
Sbjct: 81  KYEKELELKKKMFLDSLRKNTGIELEDVEILENKNNLNYRNKIELKM-NEDFELCYCVDN 139

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR-------AKLFQIDYLTSQSDQA 117
            ++K  ++++        IN  +  + A ++   +           L  I   ++   + 
Sbjct: 140 GESK--IKLENCPLSDECINKFLPFLQAKLKEFKINSYDVNTDEGILKNISIRSNYKSEI 197

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTV 173
           ++T++  + + +A       L +  + +     +     K  I + ++    ++ +  T 
Sbjct: 198 MITVVVKKDIVEA-HNFVKSLSE--YEKLVSGYININTKKASIIMGQEIKLIFLKKSFTD 254

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARHFD 232
                 +     SF Q N     ++ +       G    +LL+LY G G  S+  + +F 
Sbjct: 255 KIGKYEFNISPKSFFQVNRFQTENLYKIAKDFLGGNKDKNLLDLYSGIGTTSIYFSENFK 314

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V+ VE+ K +V+ A+ N+  N V NV+ +   S+E  + +             + +   
Sbjct: 315 KVIGVEVVKDAVKDAKENLKLNDVKNVEFLYGKSEEKIEEI-------------LKNNNI 361

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             I VDPPR GLD   V  +       ++Y+SCN  +L RDL         ++++ L D 
Sbjct: 362 DIISVDPPRKGLDKKVVDTIIKSNIKKVVYVSCNGATLTRDLKYFIDGGFELKKVKLCDM 421

Query: 350 FPYTRHMECGVLLVR 364
           F  T H E  V + +
Sbjct: 422 FSKTGHCEVVVEIEK 436


>gi|300312262|ref|YP_003776354.1| 23S rRNA (Uracil-5-)-methyltransferase [Herbaspirillum seropedicae
           SmR1]
 gi|300075047|gb|ADJ64446.1| 23S rRNA (Uracil-5-)-methyltransferase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 453

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 138/379 (36%), Gaps = 30/379 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              +   +   Q+A K   L   +        ++           YR RA   + H    
Sbjct: 83  GCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIYGPTWGYRYRARISVRHVAKK 142

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+    + D
Sbjct: 143 GGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVAGL-SIRDRMPQIELAVGEGD 201

Query: 116 QA-IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
               VT++  R+++       + L+      K +  L  +   T           + T+ 
Sbjct: 202 DGNKVTVLVLRIMEALSPADEVLLKSFADEHKIEWWLQTKGPDTAAPYYPAQSRLQYTLP 261

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDR 233
              +        FTQ N  IN  ++   L       Q  + +L+CG GNF+L +A     
Sbjct: 262 EFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVADLFCGLGNFTLPIATLARE 321

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E +    E A  N   N V           +   +      F    +  +   +F 
Sbjct: 322 VVGIEGSTALTERALDNAKVNGV-----------DAKTSFYCRNLFEAKPEDFVALGKFD 370

Query: 294 TIFVDPPRSGLDDATVGMVQAYP--------HILYISCNPDSLCRDLSILS--TTHTIER 343
            + +DPPR G  +    +V+  P         I+Y+SCNP +L RD  +L     + ++ 
Sbjct: 371 RMLIDPPREGAMEVCKALVELPPEQQHLKPKRIVYVSCNPATLARDAGMLVHLGGYALKY 430

Query: 344 LALFDQFPYTRHMECGVLL 362
             + + FP+T H+E   + 
Sbjct: 431 AGVVNMFPHTAHVESIAVF 449


>gi|172060777|ref|YP_001808429.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia ambifaria
           MC40-6]
 gi|171993294|gb|ACB64213.1| RNA methyltransferase, TrmA family [Burkholderia ambifaria MC40-6]
          Length = 484

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 134/380 (35%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + +    
Sbjct: 120 GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVAKK 179

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 180 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSQV 238

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  +   +  D   E  +R     H  ++ +Q  G    T        +D  L   G
Sbjct: 239 TALVLRVLEPINAD--DEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEFG 296

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 297 IRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREV 354

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E +      A  N   N V+                     F    D       F  
Sbjct: 355 MGIEGSDTLTTRALANARENGVDGHTTFAC-----------RNLFEVTGDDLRALGAFDK 403

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 404 FLIDPPREGALAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 463

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 464 GVVNMFPNTSHVESIALFER 483


>gi|300935050|ref|ZP_07150082.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           21-1]
 gi|281177994|dbj|BAI54324.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|300459713|gb|EFK23206.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           21-1]
          Length = 375

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|152980877|ref|YP_001353823.1| 23S rRNA 5-methyluridine methyltransferase [Janthinobacterium sp.
           Marseille]
 gi|151280954|gb|ABR89364.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 457

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 148/383 (38%), Gaps = 33/383 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++   +   Q+A K   L   +        +            YR RA   + +    
Sbjct: 82  GCSMQHLEPSAQVALKQRILEDNLKHIGKVKAETMLRPIHGPTWGYRYRARISVRNVPKK 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   I    ++   L QI+    Q  
Sbjct: 142 GGVLVGFHERKSSFITDMKTCEILPPNVSAMLVPLRELIASLSVIDH-LPQIELAIGQGA 200

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           Q  VT +  R++ +   +  ++L+    LH  ++ +Q  G  +  +     + +   L  
Sbjct: 201 QEKVTAMVLRIMTELSADDEVKLKAFADLHQVQWWLQPAGPDSAYQFYPTENNLHYALPE 260

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + ++     FTQ N  IN  ++   L        D + +L+CG GNF+L +A    
Sbjct: 261 FNVKMPFK--PTDFTQVNHQINRVLVARALRLLDAQPTDRIADLFCGLGNFTLPIATQAR 318

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E +    E +  N  AN + +             +      F    +  +   +F
Sbjct: 319 EVVGIEGSTTLTERSLENAVANGLAD-----------KTSFYCRNLFEAKAEDFVELGKF 367

Query: 293 KTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIE 342
             + +DPPR G     +A   + ++ P      I+Y+SCNP +L RD ++L     + ++
Sbjct: 368 DRMLIDPPRDGALAVCEALSELGKSQPDLLPSRIVYVSCNPSTLARDAAVLVNEGLYDLK 427

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
              + + FP+T H+E   +   +
Sbjct: 428 NAGVINMFPHTSHVESMAVFELR 450


>gi|195440654|ref|XP_002068155.1| GK12558 [Drosophila willistoni]
 gi|194164240|gb|EDW79141.1| GK12558 [Drosophila willistoni]
          Length = 612

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 75/424 (17%), Positives = 146/424 (34%), Gaps = 69/424 (16%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH-----------------YRM 45
             L    YE QL  K D +  ++  +     ++      H                 YR 
Sbjct: 175 CPLAALPYEDQLKTKTDEMSSLLKKYTQELRKVNPEAKPHLDKFQFEGVIPSTTINGYRN 234

Query: 46  RAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMIEMMATIRLE 97
           + EF +  + +    + F   +         E   + +    +         ++   +  
Sbjct: 235 KNEFTVGKNNNGEIVVGFRLGSYSDGSVEVAEIQELPHLPDAAKWAAESFQRLVRQSKFL 294

Query: 98  PLL------RAKLFQIDYLTSQSDQAIVTLIYHRLLDD-AWRECAIRLRDALHARKYQIQ 150
           P          +   + Y  S  +  +V  +Y   L +    E    L+     +     
Sbjct: 295 PFNPVGNVGHFRQLMVRYSNSAHELMLVAGVYSSNLSETEQHELKEELKTFYEQQVDPDS 354

Query: 151 LIGRA----------------NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
               +                N  +  L   ++ + +    + L +R    +F Q N   
Sbjct: 355 PYKCSSLYYQDVKHREAGQMVNPVEHLLGSTHITDTI----QGLQFRISPLAFFQINTEG 410

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
              + +  +      +   +L++ CG G  +L  A+H  +VL VEI   +++ A +N  A
Sbjct: 411 ANVLYQKAIDLAAPTKDSTVLDICCGTGTIALSFAKHCKKVLGVEIVPDAIKDAEFNAEA 470

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + N K    ++ +F ++M  E     L D ++         VDPPR+GL + ++  ++
Sbjct: 471 NGIKNCKFFTGNADDFIKSMVHEA----LYDQEVGKKGDLIAIVDPPRAGLHNRSIAAIR 526

Query: 314 ---AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVL 361
              A   ++Y+SCNP    R+   L               +     D FP+T H E  +L
Sbjct: 527 SASAITRLVYVSCNPHIAKRNFIELARPESKQYKGEPFYPKTALAVDMFPHTSHTELVIL 586

Query: 362 LVRK 365
             R+
Sbjct: 587 FERE 590


>gi|15605800|ref|NP_213177.1| RNA methyltransferase [Aquifex aeolicus VF5]
 gi|50401329|sp|O66617|Y257_AQUAE RecName: Full=Uncharacterized RNA methyltransferase aq_257
 gi|2982968|gb|AAC06582.1| RNA methyltransferase (TrmA-family) [Aquifex aeolicus VF5]
          Length = 425

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 146/371 (39%), Gaps = 35/371 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPIHYRMRAEFHIWHDGD 56
              +    YE+QL  K D L + +             +I   +  +YR+R +F I     
Sbjct: 78  GCQIQHLNYEEQLRSKKDILLESLERIGKIKEVPYEGEIPSKKEFNYRVRVQFKI----Q 133

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
           +     +    KE + ++  +     IN L+  +   +++   L+           ++  
Sbjct: 134 ENRVGFYRWDVKEVVDVEECLLAHERINELIPHIREVLKVIKDLQEVHVNYSPTRDEATL 193

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV-DERLTVAG 175
             VT+ +        +     L + L    + + +          + R  V  E + +  
Sbjct: 194 KFVTITHT-----DEKLLQNILENVLPE--WVVGIGDYGKVGNSLVKRYKVGREHIFMDV 246

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
               YR   +SF Q N  +    L+ VL  ++  +   L+L+CG G F++ L+   + + 
Sbjct: 247 GKWQYRVSNDSFFQVNYTLWEDFLKEVLDFSESYKKG-LDLHCGVGFFTIPLSEQGNFIE 305

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
             +    +++ A YN   N+ +NV      +  F    RR  E   L            +
Sbjct: 306 GADANPSAIKDAEYNAKINNRDNVIFE--EATAFKHLKRRIGEVINL------------V 351

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            VDPPRSGL      ++       I+YISCNP +  RDL IL    + ++RL L D FP 
Sbjct: 352 VVDPPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFPQ 411

Query: 353 TRHMECGVLLV 363
           T H+E   LL 
Sbjct: 412 TYHIESIALLE 422


>gi|260551956|ref|ZP_05825818.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624]
 gi|260405359|gb|EEW98854.1| SAM-dependent methyltransferase [Acinetobacter sp. RUH2624]
          Length = 463

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 155/377 (41%), Gaps = 31/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWH--DG 55
             ++     ++Q+  K + L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQIRLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQ 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D L     +  +     I         ++  + E+   ++    L+ K        ++ D
Sbjct: 158 DRLILGFREHHSNRLTSIHTCSVLDKKLSDSLPELRTLLQ---SLKGKAHIGHVELAKGD 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             I  L+ H  ++        +LR     + +Q+ L  +  ++   +D +    RL  A 
Sbjct: 215 DEISLLVRH--VEKLNNSDVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYAL 272

Query: 176 RTLI--YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
                 +      FTQ N  +N  M++      +  QG+ +L+L+CG GNFSL LAR   
Sbjct: 273 NAFEVNFAFSPLDFTQVNGTVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVG 332

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ VE ++  V+ A  N   N++  V      S++ T+        N+        
Sbjct: 333 ANGQVVGVEASEEMVQRATDNAKCNNLVQVNFF---SQDLTKDFSHHSWANQ-------- 381

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALF 347
             F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L+   + +++ A+ 
Sbjct: 382 -GFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLAQHGYKLKKAAVM 440

Query: 348 DQFPYTRHMECGVLLVR 364
           D F +T H+E   L  +
Sbjct: 441 DMFTHTEHVESIALFEK 457


>gi|257454008|ref|ZP_05619282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enhydrobacter
           aerosaccus SK60]
 gi|257448486|gb|EEV23455.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enhydrobacter
           aerosaccus SK60]
          Length = 503

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 149/397 (37%), Gaps = 47/397 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             +L   Q + Q+  K   L +++        +       ++ + YR +A   + +    
Sbjct: 121 GCSLQHWQPDGQIQFKQSVLAELLEHQAHIQPEHWLPPLVADRLGYRTKARMGVRYVEKK 180

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   ++ +     ++        I    IE +  +      R  + Q++    ++ 
Sbjct: 181 GTALVGFRERASNFLANLNECHVLDPRI-GFEIENLKALISSLDARDHIPQLELAMGETL 239

Query: 116 QAIV-----TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---- 166
             ++       +  R + D       +L+     R +Q+ L  + + T   +D  Y    
Sbjct: 240 DDVIDSKKSIAVIVRHMVDLGEHDIAKLQAFFAERNWQLFLQPKGSDTVHRIDPLYENNA 299

Query: 167 --------VDER----LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213
                   V         +    + +      FTQ N  +N  M +  +   +   G+ +
Sbjct: 300 HARPSSLTVPPTGGLFYRLPEFDVTFEFSPLDFTQVNLSVNRKMTKLAIDLLELKPGERV 359

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+L+CG GNFSL LAR       V+ VE +    + A+ N  AN +++       +++ T
Sbjct: 360 LDLFCGLGNFSLPLARQVGETGFVIGVEGSSEMTQRAKMNATANGLHHTDFF---AQDLT 416

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLC 329
           +    E              +   + +DPPRSG  +    + +     I+Y+SCNP +L 
Sbjct: 417 KDFSAEPWVG----------QVDALLIDPPRSGALEVMQYLDKFNAKRIVYVSCNPITLA 466

Query: 330 RDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RD + +L   + +    + D FP+T H+E      ++
Sbjct: 467 RDTAVLLDKGYKLTHAGVMDMFPHTGHVESIARFEKR 503


>gi|241766451|ref|ZP_04764323.1| RNA methyltransferase, TrmA family [Acidovorax delafieldii 2AN]
 gi|241363348|gb|EER58868.1| RNA methyltransferase, TrmA family [Acidovorax delafieldii 2AN]
          Length = 487

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 135/394 (34%), Gaps = 40/394 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              +       Q+A K   L   +        +            YR RA   + H    
Sbjct: 102 GCKMQHLHVAAQVAVKQRVLEDNLWHLGKVKAETLLRPIEGPAWGYRFRARLAVRHVIKK 161

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     +++++    +         ++A+++ + A I      R    QI+     + 
Sbjct: 162 GTVLVGFHERKSRYVADMVQCPVLPPHVDAMLMPLRALIASLDA-RDTCPQIELACGDTV 220

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V  + H     A     +R   A H  ++ +Q  G      +    + +   L   G
Sbjct: 221 TALV--LRHLEPLSAGDIAQLRAFAAKHGVQWWLQPKGPDTVKLLDEGGEQLSYALPDFG 278

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
            T+ ++     FTQ N  IN  ++   L          +++ +CG GNF+L LA     V
Sbjct: 279 ITMPFK--PTDFTQVNPHINRVLVSRALRLLDVQKSERVIDWFCGLGNFTLPLATQAREV 336

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E ++  V  +R N A N         +++ EF         F    ++ +       
Sbjct: 337 LGIEGSEALVARSRENYAINQAAAQGQRPLAATEFV----ARNLFEMTPEMLVADGAADK 392

Query: 295 IFVDPPRSGLDDATVGMV----------------------QAYPHILYISCNPDSLCRDL 332
             VDPPR G       +                            I+Y+SCNP +L RD 
Sbjct: 393 WLVDPPREGAFALAKALADIEQARIGAEGADPLPAGAEGWTPPQRIVYVSCNPATLARDA 452

Query: 333 SILS--TTHTIERLALFDQFPYTRHMECGVLLVR 364
            +L     +      + + FP+T H+E   +  R
Sbjct: 453 GLLVHLAGYKCTAAGMVNMFPHTAHVESMAVFER 486


>gi|183219518|ref|YP_001837514.1| putative tRNA (uracil-5-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189909660|ref|YP_001961215.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167774336|gb|ABZ92637.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777940|gb|ABZ96238.1| Putative tRNA (uracil-5-)-methyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 399

 Score =  208 bits (530), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 143/398 (35%), Gaps = 52/398 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWH----DG 55
               L   Y ++L +K   ++++  A++   +   +    P +YR + +         + 
Sbjct: 19  GCNYLDIDYTKELRKKEQNIKELFKAYRHVEIKTIVPSPSPEYYRHKIQLPFGRRIVGNK 78

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYL- 110
             L   +F+++    +           +  + + +    R E LL    ++K   + YL 
Sbjct: 79  TLLTLGLFNKEASFVLDQTECQIQDPGLTEVALAVKQWARREGLLPYNEKSKRGMMKYLV 138

Query: 111 ---TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-----------------HARKYQIQ 150
              +  + + IV ++  +      ++ + RL  A+                 H    +  
Sbjct: 139 ARKSITTGEIIVGIVTAKEDLPHAKDASKRLHTAIQNRIGKTGKFGKLVGIIHNINTKHT 198

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
            +    +  +   R Y+ E          +R   ++F Q N      +   VL       
Sbjct: 199 TMALGREEHLLWGRPYIHEHFGKH----KFRVGLSTFLQVNPIQTPSLYNLVLDEI-EKD 253

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +++ Y G G  S  +A     VL +E    S   A  ++  N V+NV+  +    E  
Sbjct: 254 SRVIDAYSGIGTISFWIAGQSKEVLGIEENPNSHRTALESLKYNKVHNVRFRKGRVAEVL 313

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
             +                  + TI +DPPR+GL       + A     I+Y+SC+P SL
Sbjct: 314 PTLY--------------GKNYDTIVLDPPRTGLGAEVTETILAMGFKKIVYVSCDPMSL 359

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             D  +L+  + +  L   D FP T H+E   +   K 
Sbjct: 360 REDSILLTKQYFLNSLQPVDMFPRTDHVETVAVFRNKN 397


>gi|331672398|ref|ZP_08373189.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA280]
 gi|331070593|gb|EGI41957.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA280]
          Length = 375

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ I  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPIHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|284799691|ref|ZP_05984596.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria subflava
           NJ9703]
 gi|284797230|gb|EFC52577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria subflava
           NJ9703]
          Length = 465

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 141/375 (37%), Gaps = 27/375 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L    +  Q+A K   L + +        +I          +YR RA   +  D   
Sbjct: 104 GCSLQHVSFGAQVALKQRILEEQLERIGKVKPEIILPPLYGYSWYYRDRARLSVSVDKQG 163

Query: 58  LYHIMF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
             ++ F  +++ + + I +       ++  + ++   ++       K+  +++   ++  
Sbjct: 164 RLNLGFQAKKSHDVVNIRHCHILPKHVSDRLPDVRNLLQKLHDDGVKVKFVEFYCGKNVT 223

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLTV 173
           A+     ++       E      + L   +   Q+  + +   +     +   ++     
Sbjct: 224 ALNIRFINQPFGQILSELRNWFDNILSGAEKAWQIWLQDHAESLPFYPENAPALNYNFAQ 283

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + Y+     FTQ NA +N  M+   +      +G+ + +L+CG GNFSL LA+   
Sbjct: 284 FDVEMPYK--PGDFTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGA 341

Query: 233 RVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E A   V+ AR N   N    N+                   F+  +       +
Sbjct: 342 SVVGIEGAYYLVDRARENARLNRCAENMTFSVAD------------LFDTDEKTVESWGK 389

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
           F  + +DPPRSG       + + +    I+Y+SCNP +  RD  +L    +  +   + +
Sbjct: 390 FDKMLLDPPRSGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMN 449

Query: 349 QFPYTRHMECGVLLV 363
            F  T H+E   +  
Sbjct: 450 MFAQTSHVESIGVFE 464


>gi|225076548|ref|ZP_03719747.1| hypothetical protein NEIFLAOT_01596 [Neisseria flavescens
           NRL30031/H210]
 gi|224952119|gb|EEG33328.1| hypothetical protein NEIFLAOT_01596 [Neisseria flavescens
           NRL30031/H210]
          Length = 441

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 139/375 (37%), Gaps = 27/375 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L    +  Q+A K   L + +         I  S       +YR RA   +  D   
Sbjct: 80  GCSLQHVSFGAQVALKQRILEEQLERIGKVKPGIILSPLYGYSWYYRDRARLSVSVDKQG 139

Query: 58  LYHIMF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
              + F  +++ + + I +       ++  + ++   ++       K+  +++   ++  
Sbjct: 140 RLKLGFQAKKSHDVVNIRHCQILPKHVSDRLPDVRNLLQKLHDDGVKVKFVEFYCGKNVT 199

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLTV 173
            +     ++       E        L   +   Q+  + +   +     +   ++     
Sbjct: 200 VLNIRFVNQPFGQILSELRNWFDKILSGAEKAWQIWLQDHAESLPFYPENAPALNYTFAQ 259

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + Y+     FTQ NA +N  M+   +      +G+ + +L+CG GNFSL LA+   
Sbjct: 260 FDVEMPYK--PGDFTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGA 317

Query: 233 RVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E A   V+ AR N   N    N+                   F+  + I     +
Sbjct: 318 SVVGIEGADYLVDRARENARLNRCAENITFSVAD------------LFDTDEKIVESWGQ 365

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
           F  + +DPPR+G       + + +    I+Y+SCNP +  RD  +L    +  +   + +
Sbjct: 366 FDKMLLDPPRNGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMN 425

Query: 349 QFPYTRHMECGVLLV 363
            F  T H+E   +  
Sbjct: 426 MFAQTSHVESIGVFE 440


>gi|218699235|ref|YP_002406864.1| 23S rRNA methyluridine methyltransferase [Escherichia coli IAI39]
 gi|226725403|sp|B7NPF5|RUMB_ECO7I RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|218369221|emb|CAR16976.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli IAI39]
          Length = 375

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPIKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFASA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|332867187|ref|ZP_08437452.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6013113]
 gi|332734126|gb|EGJ65258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6013113]
          Length = 463

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 154/377 (40%), Gaps = 31/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWH--DG 55
             ++     ++Q+  K + L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQIHLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQ 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D L     +  +     I         ++  + E+   ++    L+ K        ++ D
Sbjct: 158 DRLILGFREHHSNRLTSIHTCSVLDKKLSDNLPELRNLLQ---SLKGKAHIGHVELAKGD 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--V 173
             I  L+ H  ++        +LR     + +Q+ L  +  ++   +D +    RL   +
Sbjct: 215 HEISLLVRH--IEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYAL 272

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + +      FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR   
Sbjct: 273 NAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVG 332

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ VE ++  V+ A  N   N++         S++ T         N+        
Sbjct: 333 AKGQVVGVEASEEMVQRATDNAKRNNLVQASFF---SQDLTIDFSHHSWANQ-------- 381

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ 
Sbjct: 382 -GFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVM 440

Query: 348 DQFPYTRHMECGVLLVR 364
           D F +T H+E   L  +
Sbjct: 441 DMFTHTEHVESIALFEK 457


>gi|215485990|ref|YP_002328421.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O127:H6
           str. E2348/69]
 gi|312969074|ref|ZP_07783281.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           2362-75]
 gi|254766925|sp|B7UMV1|RUMB_ECO27 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|215264062|emb|CAS08404.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286476|gb|EFR14389.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           2362-75]
 gi|323190681|gb|EFZ75950.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           RN587/1]
          Length = 375

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFASA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|284920712|emb|CBG33775.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli 042]
          Length = 375

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 138/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVNHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPGLVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|184156902|ref|YP_001845241.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           ACICU]
 gi|332874021|ref|ZP_08441956.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6014059]
 gi|226725374|sp|B2HTF7|RUMA_ACIBC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|183208496|gb|ACC55894.1| SAM-dependent methyltransferase [Acinetobacter baumannii ACICU]
 gi|322506798|gb|ADX02252.1| rumA [Acinetobacter baumannii 1656-2]
 gi|323516667|gb|ADX91048.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737762|gb|EGJ68654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii 6014059]
          Length = 463

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 155/377 (41%), Gaps = 31/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWH--DG 55
             ++     ++Q+  K + L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQICLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQ 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D L     +  +     I         ++  + E+   ++     +A +  ++      +
Sbjct: 158 DRLILGFREHHSNRLTSIHTCSVLDKKLSDSLPELRNLLQSLK-GKAHIGHVELAKGDYE 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--V 173
            +++     R ++        +LR     + +Q+ L  +  ++   +D +    RL   +
Sbjct: 217 TSLLV----RHIEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYAL 272

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + +      FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR   
Sbjct: 273 NAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVG 332

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ VE ++  V+ A  N   N++         S++ T+        N+        
Sbjct: 333 AKGQVVGVEASEEMVQRATDNAKRNNLVQASFF---SQDLTKDFSHHSWANQ-------- 381

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ 
Sbjct: 382 -GFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVM 440

Query: 348 DQFPYTRHMECGVLLVR 364
           D F +T H+E   L  +
Sbjct: 441 DMFTHTEHVESIALFEK 457


>gi|94987018|ref|YP_594951.1| RNA methyltransferase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731267|emb|CAJ54630.1| similar to RNA methyltransferase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 470

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 145/392 (36%), Gaps = 46/392 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSE-PIHYRMRAEFHIWHDGD 56
             T    QY+ Q+  K   ++  +      N    L +  S     YR +  F       
Sbjct: 87  GCTWQHIQYKHQIIWKKQIIQDALERIGKVNNPVILDVIPSPCEWRYRNKMVFAFAPSPC 146

Query: 57  DLYHIMF--DQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
               ++      + E + +   +  S             +      +   I      R  
Sbjct: 147 LSTVLLGLKRVDSHEVIPVTDCLLQSKNTMKIVEIVRHWVRHEQTSLEKKILTLKYFRFL 206

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRE--CAIRLRDALHARKYQIQLIGRANKTKIC 161
           + + + +T      ++    + L+++ + E     RL   L   +  I+ I  + +T++ 
Sbjct: 207 IIR-ETITGDILVELIVNKKNTLIENKFDEQALGKRLAQCLKGVE-AIKGIILSRRTQVS 264

Query: 162 LDRDYVDERLTVAGRTLIYRQI--------ENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
            D  Y +  +   G   +  Q+         ++F Q N      +   +L+  +    + 
Sbjct: 265 -DIAYSEYIIWHEGERFLEEQVGDIVLSRGNDNFFQINTKATEILYSKILSMAQLTGKEL 323

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +LY G G+ +L LA    +V+ VE    S+  A  N  +    N   ++  +  F ++
Sbjct: 324 VWDLYTGVGSIALFLAPFSLKVIGVESIAASINLANKNRLSLGYTNCSFIQDDAFSFIRS 383

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
             +                   + VDPPR+GLD   + ++   A    +Y+SCNP +  R
Sbjct: 384 QIQ------------KGITPDIVIVDPPRAGLDKKVIELLIRLAPRRCIYVSCNPGTFAR 431

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           D+++LS    I++    D FP+T H+E    L
Sbjct: 432 DIAMLSPHFVIQQTQPVDLFPHTPHVETVSYL 463


>gi|256021020|ref|ZP_05434885.1| 23S rRNA methyluridine methyltransferase [Shigella sp. D9]
 gi|332282247|ref|ZP_08394660.1| 23S rRNA methyluridine methyltransferase [Shigella sp. D9]
 gi|332104599|gb|EGJ07945.1| 23S rRNA methyluridine methyltransferase [Shigella sp. D9]
          Length = 375

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDVREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|241759288|ref|ZP_04757394.1| 23S rRNA-methyltransferase [Neisseria flavescens SK114]
 gi|241320424|gb|EER56721.1| 23S rRNA-methyltransferase [Neisseria flavescens SK114]
          Length = 441

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 65/375 (17%), Positives = 139/375 (37%), Gaps = 27/375 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L    +  Q+A K   L + +        +I          +YR RA   +  D   
Sbjct: 80  GCSLQHVSFGAQVALKQRILEEQLERIGKVKPEIILPPLYGYSWYYRDRARLSVSVDKQG 139

Query: 58  LYHIMF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
              + F  +++ + + I +       ++  + ++   ++       K+  +++   ++  
Sbjct: 140 RLKLGFQAKKSHDVVNIRHCHILPKHVSDRLPDVRNLLQKLHDDGVKVKFVEFYCGKNVT 199

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLTV 173
            +     ++  +    E        L   +   Q+  + +   +     +   ++     
Sbjct: 200 VLNIRFVNQPFEQILSELCNWFDKILSGAEKAWQIWLQDHAESLPFYPENAPTLNYTFAQ 259

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + Y+     FTQ NA +N  M+   +      +G+ + +L+CG GNFS+ LA+   
Sbjct: 260 FDVEMPYK--PGDFTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSVPLAKSGA 317

Query: 233 RVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E A   V+ AR N   N    N+                   F+  +       R
Sbjct: 318 SVVGIEGADYLVDRARENARLNRCAENMTFSVAD------------LFDTDEKTVESWGR 365

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
           F  + +DPPR+G       + + +    I+Y+SCNP +  RD  +L    +  +   + +
Sbjct: 366 FDKMLLDPPRNGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMN 425

Query: 349 QFPYTRHMECGVLLV 363
            F  T H+E   +  
Sbjct: 426 MFAQTSHVESIGVFE 440


>gi|330949798|gb|EGH50058.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae Cit 7]
          Length = 451

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 143/375 (38%), Gaps = 38/375 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANAVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSL----LINALMIEMMATIRLEPLLRAKLFQIDYLT 111
                      +++ + I++          ++N L   +    + + L   +LF+     
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQALGHVELFR----- 213

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
                 + T +  R            L+        Q+ L G           D +  RL
Sbjct: 214 -----GVATAVLLRHTAPLAEVDLALLQAFCSKHGAQLWLHGEGEPQPASPG-DTLGYRL 267

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230
                 L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA  
Sbjct: 268 EPWNLQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGL 325

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V+AVE     VE A  N  +N ++NV+  +    +             L   D  + 
Sbjct: 326 AREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAE 373

Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFD 348
            F  + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D
Sbjct: 374 GFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILD 433

Query: 349 QFPYTRHMECGVLLV 363
            FP T H+E   L  
Sbjct: 434 MFPQTAHVEAMALFE 448


>gi|327393298|dbj|BAK10720.1| 23S rRNA uracil-5- methyltransferase RumB [Pantoea ananatis
           AJ13355]
          Length = 380

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 146/386 (37%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL +K  RL Q++ AF V   L    S    +R +A+  +    +    
Sbjct: 13  SCQWLEKPYPQQLDDKGARLNQLLAAFPVKQWLPPVTSAQQGFRNKAKMVVSGSVERPVF 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +  +  +      +      + A +   +A   L P      R +L  +    S  
Sbjct: 73  GMVQRNGEATDLCACPLYPDSFSPVLATLKPFIARAGLTPYNIERQRGELKYLLLTESTQ 132

Query: 115 DQAIV--TLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV-- 167
              ++   L  H  L    +A      +L   L      IQ +  A    I    + V  
Sbjct: 133 GGMMLRFVLRSHTKLTQLRNALPWLQQQLPQ-LKVISANIQPVHMA----ILEGDEEVAL 187

Query: 168 --DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 188 TSTQALADEFNGVPLWIRPQSFFQTNPQVASALYATARDWVRQLPVNSMWDLFCGVGGFG 247

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     +  +EI+  +++ A+ +     +NNV    + S  F     R         
Sbjct: 248 LHCASPTLALTGIEISPEAIQCAQRSAQMLGLNNVSFAALDSTAFATERDR--------- 298

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+ +A    + A    ++LY SCNP ++ +D++ L   + + 
Sbjct: 299 ------VPQLVLVNPPRRGIGEALCDYLSAMAPDYVLYSSCNPQTMAQDIARLKD-YEVT 351

Query: 343 RLALFDQFPYTRHMECGVLLVRKPSG 368
           ++ LFD FP+T H E   LL R+ SG
Sbjct: 352 QVQLFDMFPHTAHFEVLTLLTRQRSG 377


>gi|293409234|ref|ZP_06652810.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B354]
 gi|291469702|gb|EFF12186.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B354]
          Length = 375

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 138/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A  + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACANQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|323526136|ref|YP_004228289.1| TrmA family RNA methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383138|gb|ADX55229.1| RNA methyltransferase, TrmA family [Burkholderia sp. CCGE1001]
          Length = 474

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 139/383 (36%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIW--HDG 55
             ++       Q+A K   L   +        + +FR        YR RA   +    + 
Sbjct: 109 GCSMQHLDIRAQVAVKQRVLEDNLQHLAKLRAETVFRPIHGPAWGYRYRARLAVRFLPEK 168

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +R   +   ++ Q++     S 
Sbjct: 169 GGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIY-DRMPQLELAVGSSV 227

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R L+         LR+     K Q  +      T   L      +D  L  
Sbjct: 228 TALVV----RNLEPLTDADEQVLREFADEHKVQFWIQPGGPDTVTPLYPLDVQLDYTLPE 283

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 284 YGIRMPFK--PTDFTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARIAR 341

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E ++     A  N   N V  +      +  E T    R                
Sbjct: 342 EVVGIEGSEVLTSRALANAELNGVAGHTSFACRNLFEVTADDLRAL------------GH 389

Query: 292 FKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + +
Sbjct: 390 FDKFLIDPPREGALAVSKALAEIAQSGNGPLPRRIVYVSCNPSTLARDSGLLVHEAGYRL 449

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + + FP+T H+E   L  R
Sbjct: 450 VGAGVVNMFPHTSHVESIALFER 472


>gi|303233829|ref|ZP_07320482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           BVS033A4]
 gi|302495024|gb|EFL54777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           BVS033A4]
          Length = 496

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 140/376 (37%), Gaps = 46/376 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
             ++    YE++L  K + +    Q +    + ++ I  +   +YR + +  +    +  
Sbjct: 73  GCSMQDITYEKELEIKKNSVLNKLQRIAKLDIKDVDILTNAEYYYRNKVDLKV----EKG 128

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
               ++++T     I      S  IN +                    I++L +     +
Sbjct: 129 KLGYYNRKTHNLTPISTCKIASKAINEM--------------------INWLGNHDLNGV 168

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
             +      +D  +     + D L      ++ I      K   D  Y  ++       L
Sbjct: 169 SEIKIRSNYNDEIQISMDYISDQLLENLKSVESIVEIYDKKKNFDLIYRKKQFVDKIGDL 228

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
            +     SF Q N      + +           D +L+LYCG G  ++ +  + +  + V
Sbjct: 229 SFIISPKSFFQVNKYNTSLLYDTAKQMMNAEANDRILDLYCGIGTTTMYI-GNGNNTIGV 287

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+ K +V+ A  N   N++ +++ +   S+     + +E               F  I V
Sbjct: 288 EVVKDAVKDANENKKLNNLESIQFIEEKSENVVGKLTQE--------------HFDIILV 333

Query: 298 DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354
           DPPR G+D+  V  +       ++YISC+P +L RDL  L+     +  + L D F  T 
Sbjct: 334 DPPRKGMDEKVVDAIIKSTAKKLVYISCDPATLARDLKALTENGFEVRDVKLVDMFAKTM 393

Query: 355 HMECGVLLVRKPSGWH 370
           H+E   LL +     H
Sbjct: 394 HVETAALLSKLDVDKH 409


>gi|291616872|ref|YP_003519614.1| RumB [Pantoea ananatis LMG 20103]
 gi|291151902|gb|ADD76486.1| RumB [Pantoea ananatis LMG 20103]
          Length = 380

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 146/386 (37%), Gaps = 40/386 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL +K  RL Q++ AF V   L    S    +R +A+  +    +    
Sbjct: 13  SCQWLEKPYPQQLDDKGARLNQLLAAFPVKQWLPPVTSAQQGFRNKAKMAVSGSVERPVF 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +  +  +      +      + A +   +A   L P      R +L  +    S  
Sbjct: 73  GMVQRNGEATDLCACPLYPDSFSPVLATLKPFIARAGLTPYNIERQRGELKYLLLTESTQ 132

Query: 115 DQAIV--TLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV-- 167
              ++   L  H  L    +A      +L   L      IQ +  A    I    + V  
Sbjct: 133 GGMMLRFVLRSHTKLTQLRNALPWLQQQLPQ-LKVISANIQPVHMA----ILEGDEEVAL 187

Query: 168 --DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 188 TSTQALADEFNGVPLWIRPQSFFQTNPQVASALYATARDWVRQLPVTSMWDLFCGVGGFG 247

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     +  +EI+  +++ A+ +     +NNV    + S  F     R         
Sbjct: 248 LHCASPTLALTGIEISPEAIQCAQRSAQMLGLNNVSFAALDSTAFATERDR--------- 298

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+ +A    + A    ++LY SCNP ++ +D++ L   + + 
Sbjct: 299 ------VPQLVLVNPPRRGIGEALCDYLSAMAPDYVLYSSCNPQTMAQDIARLKD-YEVT 351

Query: 343 RLALFDQFPYTRHMECGVLLVRKPSG 368
           ++ LFD FP+T H E   LL R+ SG
Sbjct: 352 QVQLFDMFPHTAHFEVLTLLTRQRSG 377


>gi|253996084|ref|YP_003048148.1| 23S rRNA 5-methyluridine methyltransferase [Methylotenera mobilis
           JLW8]
 gi|253982763|gb|ACT47621.1| RNA methyltransferase, TrmA family [Methylotenera mobilis JLW8]
          Length = 458

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 140/382 (36%), Gaps = 32/382 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
              L    +  Q+A K   L   +        +            YR +A   + +    
Sbjct: 90  GCKLQHLDFAAQVATKQRLLESDLWHIGKVKAENMLPPLYGPTWGYRHKARLSVKYVEKK 149

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS--- 112
             +     ++ T+    ++        ++AL+  +   I     +R KL QI+       
Sbjct: 150 QRVLVGFNEKSTRFVADMNSCEVLVPEVSALIAPLQDLIVQL-SIRDKLPQIELAVGEPD 208

Query: 113 ---QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-KICLDRDYVD 168
              Q+ ++++ LI  R++     +    L+    A   Q+    +   T K         
Sbjct: 209 ANAQTGKSVIVLIL-RIMAPLTEQDEALLKAFADAHAVQVWTQTKGPDTIKPFYPLAGSQ 267

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
            + ++    L Y    N FTQ N  IN  M+   +        + + + +CG GNF+L +
Sbjct: 268 LQYSLPEFGLTYPFKPNEFTQVNPQINQVMIRRAMQLLAPQAHEKIADFFCGIGNFTLPI 327

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           AR   +VL +E     VE A  +   N + +VK                  F    +   
Sbjct: 328 ARSGAQVLGLEGLANLVERANESAQLNEIKHVKFGVAD------------LFKMTPEALT 375

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL--STTHTIER 343
              RF    VDPPR G  +    +  +     I+Y+SCNP +L RD  +L     + ++ 
Sbjct: 376 ELGRFDKWLVDPPRDGAFELVKALDASNQPGSIVYVSCNPATLARDAGVLVNEKGYQLQA 435

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
             + + FP+T H+E   L   K
Sbjct: 436 AGVINMFPHTAHVESIALFTLK 457


>gi|154483239|ref|ZP_02025687.1| hypothetical protein EUBVEN_00940 [Eubacterium ventriosum ATCC
           27560]
 gi|149736047|gb|EDM51933.1| hypothetical protein EUBVEN_00940 [Eubacterium ventriosum ATCC
           27560]
          Length = 317

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 23/235 (9%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           + + +L   +H     +  + ++++T++   ++YV E L      L ++    SF Q N+
Sbjct: 18  DLSAKLCGVIHIINDGLADVVQSDETRVLYGQEYVYEELL----GLKFKISVFSFFQTNS 73

Query: 193 GINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                +           +  L+ +LY G G  + +LA    +V+ VEI + +VEAA+ N 
Sbjct: 74  LGAEVLYSKAREYIGETKDKLIFDLYSGTGTIAQILAPVAKKVVGVEIIEEAVEAAKVNA 133

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           + N++ N + +                   LK ID    +   I +DPPR G++   +  
Sbjct: 134 SLNNLENCEFIAGDV---------------LKVIDDLQDKPDLIVLDPPRDGINPKALQK 178

Query: 312 VQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           +       ++YISC P SL RDL +L    + + + A  DQFP T H+E  VLL 
Sbjct: 179 IIDFGVDRMVYISCKPTSLARDLEMLQEQGYKVVKAAAIDQFPNTNHVETVVLLS 233


>gi|302185508|ref|ZP_07262181.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. syringae 642]
          Length = 451

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 141/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + ++                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLMRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKSFSKPQA-LGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 215 --VATAVLLRHTAPLAEADLALLQAFCSRHGAQLWLHGDGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGMAREV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD   L    + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQISKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|299771548|ref|YP_003733574.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter sp. DR1]
 gi|298701636|gb|ADI92201.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter sp. DR1]
          Length = 463

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 149/375 (39%), Gaps = 27/375 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDD 57
             ++     ++Q+  K   L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQIRLKQSVLQSHLQHFAGIQPEQWLEPIRSLQTDYRRRARIGVRYLPKP 157

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
              IM   +     R+      S+L   L   +     L   L+ K        ++ D  
Sbjct: 158 DRLIM-GFREHHSNRLTSIHTCSVLDKKLSDSLPELRILLQSLKGKAHIGHVELAKGDHE 216

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  L+ H  ++        +L+     + +Q+ L  +  ++   +D +    RL  A   
Sbjct: 217 ISLLVRH--VEKLNNSDVNQLKQFALDKWWQLYLQPKGPESIHRIDDEKGALRLHYALER 274

Query: 178 LI--YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR- 233
               +      FTQ NA +N  M++      +   G+ +L+L+CG GNFSL LAR     
Sbjct: 275 FNVNFAFSPLDFTQVNATVNEQMVQLACELLQLQPGEKVLDLFCGLGNFSLPLARCVGES 334

Query: 234 --VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE ++  V+ A  N   N +         S++ T+        N+          
Sbjct: 335 GQVVGVEGSEEMVQRATANAKCNSLVQATFF---SQDLTKDFSHHSWANQ---------G 382

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
           F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ D 
Sbjct: 383 FDALLIDPPRAGAYEIMQYVSNFGAKRIVYVSCNPATLARDAGVLVQYGYQLKKAAVMDM 442

Query: 350 FPYTRHMECGVLLVR 364
           F +T H+E   L  +
Sbjct: 443 FTHTEHVESIALFEK 457


>gi|15603731|ref|NP_246805.1| 23S rRNA 5-methyluridine methyltransferase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|20140227|sp|Q9CJX3|RUMA_PASMU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|12722294|gb|AAK03950.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 437

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/361 (22%), Positives = 155/361 (42%), Gaps = 31/361 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF--DQQTK 68
           Q   K   L Q +   Q     + +  + P HYR R    +          M    + T+
Sbjct: 100 QRQAKQQALFQRLQQLQPQATFMPMIVAAPWHYRRRVRLSVRFHPKSKQLAMGLRQRNTQ 159

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           + + + +     + ++ L+ ++   +     L   L  ++ +   +D  I  L+ H    
Sbjct: 160 QIVNLQHCDVLEIPLSQLLPKL-HLLFSTWSLPKNLGHVELV--HADNGIAMLLRHT--G 214

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +  +     L +   A++  + L  + ++    L  +     L    + L +      F 
Sbjct: 215 NLAQTDRTLLTNF--AQQENLMLFVQDDQQITQLHGEAPYYILRDGTK-LQFDI--RDFI 269

Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q NA +N  M++  L   +    D +L+L+CG GNF+L ++R  ++V+ +E     VE A
Sbjct: 270 QVNAVVNQKMIDTALEWLELTSNDNVLDLFCGMGNFTLPISRQVNQVVGIEGVGEMVEKA 329

Query: 248 RYNIAANHVNNVKIVRMSSKE-FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           + N   N  +NV+  + +  + F Q     + FN+             I +DPPR+G   
Sbjct: 330 KRNAEQNQCDNVQFYQANLDQPFVQQHWASQHFNK-------------ILLDPPRTGAAF 376

Query: 307 ATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           A   + +     ILY+SCNP +L RD +IL    + ++++A+ D FP T H+E   L  +
Sbjct: 377 ALHALCELGAEKILYVSCNPATLVRDTAILLQFNYRLKKVAMIDMFPNTGHLESISLFEK 436

Query: 365 K 365
           +
Sbjct: 437 E 437


>gi|300824000|ref|ZP_07104122.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           119-7]
 gi|331667233|ref|ZP_08368098.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA271]
 gi|331676647|ref|ZP_08377343.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H591]
 gi|300523511|gb|EFK44580.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           119-7]
 gi|331065589|gb|EGI37482.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA271]
 gi|331075336|gb|EGI46634.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H591]
          Length = 375

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVMTLLVK 374


>gi|238020378|ref|ZP_04600804.1| hypothetical protein GCWU000324_00258 [Kingella oralis ATCC 51147]
 gi|237867358|gb|EEP68364.1| hypothetical protein GCWU000324_00258 [Kingella oralis ATCC 51147]
          Length = 437

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/379 (18%), Positives = 139/379 (36%), Gaps = 32/379 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHD-GD 56
             T+   ++  Q+A K     + +        +         P HYR R    +      
Sbjct: 74  GCTMQHVEFTAQVAMKQRVFEEQLQRIGKVQPESLLPPVYGTPWHYRSRTRLAVHTSANG 133

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINAL----MIEMMATIRLEPLLRAKLFQIDYLTS 112
            +      +++ + + I+  +     ++         +   + ++P  +  +  ++    
Sbjct: 134 KVVLGYQAKRSHKIVGINQCLLLPEHVSGCLGIIHDALQDMVNVQP--KVGIRSVEISVG 191

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ--IQLIGRANKTKICL-DRDYVDE 169
           +   A+  +   R  ++     +  L      +      Q IG A    +   D   +  
Sbjct: 192 EGVTAVNIVSQKRQPENVLCALSGCLNRGAGGKTVWQVWQQIGNAKPQAVSPHDAPPLVF 251

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           RL   G T+ ++     FTQ N  +N  M+   +        + + +L+CG GNF+L LA
Sbjct: 252 RLPEFGLTMPFQL--GDFTQINLPLNEIMVARAVRYLDPQPHERIADLFCGLGNFTLPLA 309

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V+ +E +    + A  N  AN + N +                  F    +    
Sbjct: 310 KRAAEVVGIEGSAALTQRAVANARANGLPNAQFASAD------------LFAATPETLAA 357

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             RF  + +DPPR+G       +   Y    I+YISCNP +L RD ++L S  +      
Sbjct: 358 LGRFDKMLLDPPRAGAFAVVQALHAPYLPQRIVYISCNPATLARDAAVLASKGYRFATAG 417

Query: 346 LFDQFPYTRHMECGVLLVR 364
           + + FP T H+E   +  R
Sbjct: 418 MMNLFPQTSHVEAIGVFER 436


>gi|227495419|ref|ZP_03925735.1| 23S rRNA methyluridine methyltransferase [Actinomyces coleocanis
           DSM 15436]
 gi|226830966|gb|EEH63349.1| 23S rRNA methyluridine methyltransferase [Actinomyces coleocanis
           DSM 15436]
          Length = 396

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 148/394 (37%), Gaps = 45/394 (11%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           +S   +   YEQQ+AEK  R++ ++        L    S  + +R +A+  +     +  
Sbjct: 21  LSCPQIEVPYEQQVAEKTARVKSLLPMIAEDAWLPTQESASVGFRNKAKMVVTGSAANAM 80

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINAL---MIEMMATIRLEPL----LRAKLFQIDYLTS 112
             +          +      S  +          +  + + P      R +L  I    S
Sbjct: 81  LGILGSDY-AGQDLTECPLYSQHMRDFLKTFQRWIRELGISPYSVKERRGELKYILVTES 139

Query: 113 QSDQAIV--TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG----------RANKTKI 160
              Q +V   L  HR     W          +     +I ++                +I
Sbjct: 140 PDGQFLVRWVLRSHR-----WVSRLRNFVSVMQEEFPEIAVVSANILAEHVALTEGPEEI 194

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
            L  DY    L      +  + +  SF Q N  I   M +        ++ D  ++L+CG
Sbjct: 195 SLYGDY----LPFQLGRVKLQLLPRSFFQTNTFIAHAMYQQAQRWAIALKPDRAVDLFCG 250

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G F+L LA     V  VE++ P++ AA+    A+ + NV      +  F+         
Sbjct: 251 VGGFALFLAATCRAVTGVELSAPAIAAAKRGAVASGLENVDFYAADATSFS--------- 301

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST 337
             + +  +   R   I V+PPR G+       +       I+Y SCNP SL +D+ +L +
Sbjct: 302 --ISEGGLQLTRRDMIVVNPPRRGIGVELANWINESQARVIIYSSCNPVSLAKDMELLGS 359

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKPSGWHQ 371
            +   R  +FD FP T H E  VLLV++P G  +
Sbjct: 360 -YKATRARVFDMFPGTDHAEVMVLLVKEPQGNAE 392


>gi|74311403|ref|YP_309822.1| 23S rRNA methyluridine methyltransferase [Shigella sonnei Ss046]
 gi|123617630|sp|Q3Z3S5|RUMB_SHISS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|73854880|gb|AAZ87587.1| putative enzyme [Shigella sonnei Ss046]
 gi|323165792|gb|EFZ51578.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella sonnei 53G]
 gi|323172174|gb|EFZ57812.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           LT-68]
          Length = 375

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVMTLLVK 374


>gi|307297804|ref|ZP_07577610.1| protein of unknown function Met10 [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917064|gb|EFN47446.1| protein of unknown function Met10 [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 439

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 151/389 (38%), Gaps = 50/389 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDD 57
                   Y +QL  K + + +        ++ + +I  S    +YR++ E+      D 
Sbjct: 75  GCDWQTLDYSEQLFWKREVISEQFKRVGKIELEDFEIVPSPRETNYRLKMEYVCHGGKDG 134

Query: 58  LYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLRAKLFQ 106
           L   ++ + +   +     + G             ++    I     +     L+  +  
Sbjct: 135 LSLGLYRRNSNSPVSCQGCVLGLKDFEKARSGFEEILRKTAIVPYNRVTGRGELKHVI-- 192

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKI 160
              L     + +  L+             + +R  L      + L+   ++      ++ 
Sbjct: 193 ---LRGNGREIMAILVTKGECLPDENRIVLEVRKKLPYVSTLVHLMNANDRVVMRGVSRT 249

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
                 +D+ L+       +     +F Q N  +   ++  +    K   GD LL+LY G
Sbjct: 250 LFGEGVIDQELS----GRKFEIPPVAFFQNNLEVTESIVSHIFNEMKDTAGDSLLDLYSG 305

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G FS+ + +   RV AVE    SV+A + N   N +  ++IV     EF ++ +R    
Sbjct: 306 IGTFSITVGKKMGRVTAVESNPVSVKALKANSNLNGMFGIEIVSSDVIEFLKSDQR---- 361

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-S 336
                       + TI +DPPRSG+    +G++  +    + Y+SC+P +L RD + L  
Sbjct: 362 -----------HYSTIILDPPRSGVGSE-IGLLDKFGASMVFYVSCDPTTLARDTAKLRE 409

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + + I  +  FD FP T H+E  V LV+K
Sbjct: 410 SGYKISSVKAFDMFPQTWHVETVVCLVKK 438


>gi|319639269|ref|ZP_07994020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa C102]
 gi|317399453|gb|EFV80123.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria mucosa C102]
          Length = 441

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 138/375 (36%), Gaps = 27/375 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L    +  Q+A K   L + +        +I          +YR RA   +  D   
Sbjct: 80  GCSLQHVSFGAQVALKQRILEEQLERIGKVKPEIILPPLYGFSWYYRDRARLSVAVDNKG 139

Query: 58  LYHIMF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
              + F  +++ + + I +       ++  + ++   ++       K+  +++   ++  
Sbjct: 140 RLKLGFQAKKSHDVVNIRHCSILPKHVSDKLPDVRNLLQKLHDDGVKVKFVEFYCGRNVT 199

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLTV 173
            +     ++       E        L   +   Q+  + +   +     +   ++     
Sbjct: 200 VLNIRFVNQPFGQILSELRNWFDKILSGAEKAWQIWLQDHVESLPFYPENAPALNYNFAQ 259

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + Y+     FTQ NA +N  M+   +      +G+ + +L+CG GNFSL LA+   
Sbjct: 260 FDVEMPYK--PGDFTQINAQLNEVMVARAVRLLNPQKGERIADLFCGLGNFSLPLAKSGA 317

Query: 233 RVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E A   V+ AR N   N    N+                   F+  +       +
Sbjct: 318 SVVGIEGADYLVDRARENARLNRCAENMTFSVAD------------LFDTDEKTVESWGK 365

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
           F  + +DPPRSG       + + +    I+Y+SCNP +  RD  +L    +  +   + +
Sbjct: 366 FDKMLLDPPRSGAYAVVKSLHKPFLPQKIVYVSCNPSTFARDAGVLVDKGYKFKAAGIMN 425

Query: 349 QFPYTRHMECGVLLV 363
            F  T H+E   +  
Sbjct: 426 MFAQTSHVESIGVFE 440


>gi|218688641|ref|YP_002396853.1| 23S rRNA methyluridine methyltransferase [Escherichia coli ED1a]
 gi|254766927|sp|B7MQW3|RUMB_ECO81 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|218426205|emb|CAR07029.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli ED1a]
 gi|315299392|gb|EFU58644.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           16-3]
          Length = 375

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKAADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|220911913|ref|YP_002487222.1| 23S rRNA methyluridine methyltransferase [Arthrobacter
           chlorophenolicus A6]
 gi|219858791|gb|ACL39133.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Arthrobacter
           chlorophenolicus A6]
          Length = 375

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 146/378 (38%), Gaps = 32/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S TL+   Y +QLA K    + ++     +  L+   S+   +R +A+  I     +   
Sbjct: 13  SCTLMGTPYGEQLAGKQAHCQTLLADHTALEWLEPVASQESAFRNKAKMVISGTARNPTI 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYLTSQ 113
            + D +    + +      S  + A+   + A IR         P    +L  +    S 
Sbjct: 73  GILDAEAHG-IDLRKCGVCSPGLRAVFPVVAAFIRTHRLTPYDVPNRSGELKHLIVTESP 131

Query: 114 SDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DE 169
             + ++ L+     L    R+    L +AL   K     +   +K  +  DR+ +     
Sbjct: 132 DGEIMLRLVLRSEQLVPRIRKHLPDLLEALPQVKVVSINLHPEHKAVLEGDREILLTEQS 191

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA 228
            L +    +       SF Q N+ +   +          +    + +LYCG G F+L +A
Sbjct: 192 TLNMRVNDINLHLRPQSFFQTNSHMAAALYRQGREWVNELAPASVWDLYCGVGGFALHVA 251

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
                V  +E +  ++ +AR +     +  ++     +  F  A R+             
Sbjct: 252 NPSRTVTGIETSSEAIVSARLSSDEAGLQGMEFEAGDATAFALAARQA------------ 299

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLAL 346
                 + V+PPR G+     G +++    H++Y SCN  SL RDL+ L +  T  R+ +
Sbjct: 300 ---PDLVIVNPPRRGIGKELCGWLESSDVQHVVYSSCNAQSLARDLAALPS-FTARRVRV 355

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP T H E  VLL R
Sbjct: 356 LDMFPQTTHYEVMVLLER 373


>gi|56459913|ref|YP_155194.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Idiomarina loihiensis
           L2TR]
 gi|56178923|gb|AAV81645.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Idiomarina loihiensis
           L2TR]
          Length = 450

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 145/385 (37%), Gaps = 65/385 (16%)

Query: 11  EQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRAEFHIWHDGD--DLYH 60
           ++QLA K   + ++   F V        P  +   SEP+ YR R        G    L  
Sbjct: 98  QKQLAHKRQVVEELFQKFGVFNPQTSSLPWQEPLVSEPMRYRRRVRLATRWLGKEQKLLI 157

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
              + Q+   + I+  +    ++   +  +   +     + +KL  I+ + + +   ++ 
Sbjct: 158 GFREAQSHHIVPIEDCLVADEILLHCVNTLYPLLNTS-TVASKLGHIEAINTNTPVILL- 215

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQ-IQLIGRANKTKICLDRDYVDERL-------- 171
                           R+ +AL     Q +Q     NKT I L  +   + L        
Sbjct: 216 ----------------RITEALPGDAMQALQEWQTVNKTNIWLQSENDLQPLAGAAMPFD 259

Query: 172 -TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLAR 229
            ++ G  L ++     F Q N GIN  M++  +          + + + G GNFSL LAR
Sbjct: 260 TSIDGDKLYFQ--PGDFLQVNGGINQRMVQQAMDWLKPEKTQRVYDFFAGIGNFSLPLAR 317

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               VLAVE      E  R N  +N ++N+  +     E T +                 
Sbjct: 318 RAQSVLAVEGVYRMAEQTRINAESNGMDNLSSLSADLNEITASDL--------------G 363

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL-----STTH 339
                  +DP R G +     + +  P      ILY+SC PD+L RD++ +        +
Sbjct: 364 KPADLWCLDPARPGAEGVVKLLHKLKPEHRPQRILYVSCAPDTLARDIAGMLTESKGCNY 423

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I  L+  D FP T H+E  V L R
Sbjct: 424 RIIGLSTVDMFPQTHHIETMVCLER 448


>gi|332162249|ref|YP_004298826.1| 23S rRNA methyluridine methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666479|gb|ADZ43123.1| 23S rRNA methyluridine methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860383|emb|CBX70693.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia
           enterocolitica W22703]
          Length = 375

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 143/386 (37%), Gaps = 45/386 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K + L   +   +V   L     +   +R +A+  +    +    
Sbjct: 13  SCQWLDKPYPQQLADKQNHLENRLSDHRVTQWLSPVFGQESAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCECPLYPASFAPVFAVLKTFIARAGLTPYNVARKRGELKFLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
              + +     V     +L  L  A      +L   L      IQ +  A    + +I L
Sbjct: 130 STYSGELMLRFVLRSQTKLVQLQAALPWLQQQLPQ-LAVISVNIQPVHMAILEGEQEIPL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
                 E L      +       SF Q N  +   +        + ++ D + +L+CG G
Sbjct: 189 TE---QEALPEIFNQVPLFIRPQSFFQTNPQVAASLYATARQWVRELKIDSMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    R+  +EI+  ++  AR +     + NV    + S +F  A         
Sbjct: 246 GFGLHCADTETRLTGIEISAEAIACARQSADQLGLKNVTFAALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTH 339
                  +   + + V+PPR G+       + Q  P  ILY SCN +++ +D+S+L+  +
Sbjct: 297 ------ETQVPQLVLVNPPRRGIGAQLCEYLSQMAPQFILYSSCNAETMAKDISLLTD-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            IER+ LFD FP+T H E   LL+++
Sbjct: 350 RIERVQLFDMFPHTAHYEVLTLLIKR 375


>gi|91209893|ref|YP_539879.1| 23S rRNA methyluridine methyltransferase [Escherichia coli UTI89]
 gi|110641061|ref|YP_668791.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 536]
 gi|117623039|ref|YP_851952.1| 23S rRNA methyluridine methyltransferase [Escherichia coli APEC O1]
 gi|191172086|ref|ZP_03033630.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli F11]
 gi|218557763|ref|YP_002390676.1| 23S rRNA methyluridine methyltransferase [Escherichia coli S88]
 gi|237707177|ref|ZP_04537658.1| 23S rRNA methyluridine methyltransferase [Escherichia sp.
           3_2_53FAA]
 gi|300991847|ref|ZP_07179672.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           200-1]
 gi|122424458|sp|Q1RE66|RUMB_ECOUT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|122958455|sp|Q0TJI9|RUMB_ECOL5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|143582665|sp|A1A998|RUMB_ECOK1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725401|sp|B7MHG3|RUMB_ECO45 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|91071467|gb|ABE06348.1| hypothetical RNA methyltransferase YbjF [Escherichia coli UTI89]
 gi|110342653|gb|ABG68890.1| hypothetical RNA methyltransferase YbjF [Escherichia coli 536]
 gi|115512163|gb|ABJ00238.1| hypothetical RNA methyltransferase YbjF [Escherichia coli APEC O1]
 gi|190907613|gb|EDV67208.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli F11]
 gi|218364532|emb|CAR02214.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli S88]
 gi|226898387|gb|EEH84646.1| 23S rRNA methyluridine methyltransferase [Escherichia sp.
           3_2_53FAA]
 gi|294492584|gb|ADE91340.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           IHE3034]
 gi|300305457|gb|EFJ59977.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           200-1]
 gi|307627732|gb|ADN72036.1| 23S rRNA methyluridine methyltransferase [Escherichia coli UM146]
 gi|315287309|gb|EFU46720.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           110-3]
 gi|320196646|gb|EFW71269.1| 23S rRNA methyluridine methyltransferase [Escherichia coli
           WV_060327]
 gi|323953437|gb|EGB49303.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H252]
 gi|323958148|gb|EGB53857.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H263]
 gi|324013021|gb|EGB82240.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           60-1]
          Length = 375

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTVDLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|90579648|ref|ZP_01235457.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
 gi|90439222|gb|EAS64404.1| 23S rRNA (uracil-5-)-methyltransferase [Vibrio angustum S14]
          Length = 384

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 141/392 (35%), Gaps = 54/392 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y QQ+ +K D LR +         L    S    YR +A+  +     +   
Sbjct: 13  SCPLASLSYPQQIKQKDDVLRGLFSEHHPQQWLATVESAISGYRNKAKMVVLGAAHEPCL 72

Query: 61  IMFDQ----QTKERMRIDYF----MPGSL---------LINALMIEMMATIRLEPLLRAK 103
            +  Q     T     I        P  +          I    I      + +  L+  
Sbjct: 73  GIQKQTENLSTSGSKPISLCTCPLYPADMQALLIYIERWIRCAGIPPYNVKKKKGELKFV 132

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA------RKYQIQLIGRAN- 156
           L        +     V   +     DA       L + + A          IQ +  A  
Sbjct: 133 LLTRSNSRGEFMLRFVLRSH-----DAIARIVNNLPELMAAFPSVKVVSVNIQPVHMARL 187

Query: 157 --KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213
             + +I L  D+    L      +       SF Q N  +   +          I+   +
Sbjct: 188 EGEEEIFLTSDHY---LLEQFNHVPLVVRPKSFFQTNPKVAESLYATAKRWVSEIKPTSM 244

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +L+CG G F+L  A   + V  +EI   ++E+A+++     V N++   + S  F+Q+ 
Sbjct: 245 WDLFCGVGGFALHCAEEVEHVTGIEIEPEAIESAKHSAEIMGVTNLRFAALDSTSFSQSN 304

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331
               E                + V+PPR G+ +     +   A  HI+Y SCNP +L +D
Sbjct: 305 ESAPEL---------------VLVNPPRRGIGEQLCQQLNDFAPKHIIYSSCNPYTLEQD 349

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           L+ L+  + + +L  FD FP+T H+E  VLL 
Sbjct: 350 LARLT-GYKVIKLQWFDMFPHTEHVEVMVLLE 380


>gi|320175299|gb|EFW50405.1| 23S rRNA methyluridine methyltransferase [Shigella dysenteriae CDC
           74-1112]
          Length = 375

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 138/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIACAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L     IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|157156456|ref|YP_001462056.1| 23S rRNA methyluridine methyltransferase [Escherichia coli E24377A]
 gi|193064430|ref|ZP_03045511.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E22]
 gi|193069324|ref|ZP_03050279.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           E110019]
 gi|218553445|ref|YP_002386358.1| 23S rRNA methyluridine methyltransferase [Escherichia coli IAI1]
 gi|218694333|ref|YP_002402000.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 55989]
 gi|260843110|ref|YP_003220888.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|260854151|ref|YP_003228042.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260867032|ref|YP_003233434.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300817042|ref|ZP_07097261.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           107-1]
 gi|300902392|ref|ZP_07120375.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           84-1]
 gi|300924468|ref|ZP_07140438.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           182-1]
 gi|301305369|ref|ZP_07211464.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           124-1]
 gi|301325867|ref|ZP_07219300.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           78-1]
 gi|167012637|sp|A7ZJS7|RUMB_ECO24 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725404|sp|B7M7D4|RUMB_ECO8A RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|254766926|sp|B7LD52|RUMB_ECO55 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|157078486|gb|ABV18194.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           E24377A]
 gi|192928892|gb|EDV82505.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E22]
 gi|192957277|gb|EDV87725.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           E110019]
 gi|218351065|emb|CAU96769.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli 55989]
 gi|218360213|emb|CAQ97763.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli IAI1]
 gi|257752800|dbj|BAI24302.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257758257|dbj|BAI29754.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|257763388|dbj|BAI34883.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300405539|gb|EFJ89077.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           84-1]
 gi|300419353|gb|EFK02664.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           182-1]
 gi|300530394|gb|EFK51456.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           107-1]
 gi|300839387|gb|EFK67147.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           124-1]
 gi|300847381|gb|EFK75141.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           78-1]
 gi|315257895|gb|EFU37863.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           85-1]
 gi|320199094|gb|EFW73691.1| 23S rRNA methyluridine methyltransferase [Escherichia coli EC4100B]
 gi|323155767|gb|EFZ41936.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           EPECa14]
 gi|323175519|gb|EFZ61114.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 1180]
 gi|323185177|gb|EFZ70542.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 1357]
 gi|323947117|gb|EGB43128.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H120]
          Length = 375

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|306812692|ref|ZP_07446885.1| 23S rRNA methyluridine methyltransferase [Escherichia coli NC101]
 gi|305853455|gb|EFM53894.1| 23S rRNA methyluridine methyltransferase [Escherichia coli NC101]
          Length = 375

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 140/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKAADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E  +LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLILLVK 374


>gi|194428177|ref|ZP_03060720.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B171]
 gi|194413737|gb|EDX30016.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B171]
 gi|323159681|gb|EFZ45660.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           E128010]
          Length = 375

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTLEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|227499478|ref|ZP_03929589.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC
           35098]
 gi|227218540|gb|EEI83783.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC
           35098]
          Length = 461

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 150/386 (38%), Gaps = 50/386 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVP---NLQIFRSE-PIHYRMRAE--FHIWHDGDDLYHIMF 63
           YE +L  KVD ++ +     +     ++I +S     YR + E  F     G +L   + 
Sbjct: 95  YETELMLKVDMIKNLFKDNDIAYDGEIKINQSPISKAYRNKMEYSFGDRQKGGELVLGLH 154

Query: 64  DQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKLFQIDYLT 111
            +    E +  +         N +   +    R +            LLR  + +  + T
Sbjct: 155 RKNRFYEIVGTNDCNIIDEDFNTIRSRVEEYFRRKNASFYHKSTRDGLLRHLVVRKAHRT 214

Query: 112 SQSDQAIVTLIYH------RLLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKICL 162
           ++    +VT          + L  ++   +    ++    H           A ++ +  
Sbjct: 215 NEIMVLLVTTSDMSFDSIRKKLFLSYLLDSKLEGKIVSVYHIINDSCADAVIAEESHLIY 274

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNG 221
            ++Y+ E +      L ++    SF QPN      + +     A    + ++L+LY G G
Sbjct: 275 GKEYIREEMM----GLSFKISPFSFFQPNIFTAEKLYQKAFDLARIDEKMNVLDLYSGTG 330

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             + ++A        +EI + +VE A+ N   N ++N+  +                   
Sbjct: 331 TITQLMALKAKHATGIEIVEEAVEKAKENALLNKIDNIDFLCGDV--------------- 375

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTT 338
           L++I+  S R+  + +DPPR+G+   ++  +        +YISCNP +   +    +   
Sbjct: 376 LEEIEKVSNRYDVVILDPPRAGIAPQSLEKILKMKVDKFVYISCNPKTQLENFKDFIDQG 435

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
             I+   +FDQFP +RH+E   LL R
Sbjct: 436 FIIKDFEIFDQFPRSRHLESIALLTR 461


>gi|218548378|ref|YP_002382169.1| 23S rRNA methyluridine methyltransferase [Escherichia fergusonii
           ATCC 35469]
 gi|226725409|sp|B7LN23|RUMB_ESCF3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|218355919|emb|CAQ88534.1| 23S rRNA m(5)U747 methyltransferase [Escherichia fergusonii ATCC
           35469]
          Length = 375

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 137/372 (36%), Gaps = 37/372 (9%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
            +QL+ K   L+ ++  F V    +        +R +A+  +    +     M  +    
Sbjct: 22  PEQLSAKTADLKNLLADFSVEEWCESVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTP 81

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQSDQAIVTLIY 123
           ++      +      + A +   +A   L P      R +L  I    SQSD  ++    
Sbjct: 82  EDLCDCPLYPSSFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFV 141

Query: 124 HR------LLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            R       L  A      +L     + A    I +     +T+I L      + L    
Sbjct: 142 LRSETKLAQLRKALPWLQEQLPQLKVITANIQPIHMAIMEGETEIYLTE---QQALAERF 198

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRV 234
             +       SF Q N  +   +        + +    + +L+CG G F L  A    ++
Sbjct: 199 NDVPLWIRPQSFFQTNPVVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQL 258

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             +EIA  ++  A+ + A   +  ++   + S +F                       + 
Sbjct: 259 TGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATT---------------QGEVPEL 303

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+       +    P  I+Y SCN  ++ +D+  LS  + IER+ LFD FP+
Sbjct: 304 VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMTKDIRELS-GYRIERVQLFDMFPH 362

Query: 353 TRHMECGVLLVR 364
           T H E   LLV+
Sbjct: 363 TAHYEVLTLLVK 374


>gi|157160381|ref|YP_001457699.1| 23S rRNA methyluridine methyltransferase [Escherichia coli HS]
 gi|170020738|ref|YP_001725692.1| 23S rRNA methyluridine methyltransferase [Escherichia coli ATCC
           8739]
 gi|300921111|ref|ZP_07137495.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           115-1]
 gi|312970983|ref|ZP_07785162.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           1827-70]
 gi|167012638|sp|A7ZYG2|RUMB_ECOHS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|189045734|sp|B1IWR3|RUMB_ECOLC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|157066061|gb|ABV05316.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli HS]
 gi|169755666|gb|ACA78365.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli ATCC
           8739]
 gi|300411962|gb|EFJ95272.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           115-1]
 gi|310336744|gb|EFQ01911.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           1827-70]
          Length = 375

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWVRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDVREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|161702959|ref|YP_369356.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia sp. 383]
 gi|143580735|sp|Q39FQ4|RUMA_BURS3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 465

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 130/380 (34%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + +    
Sbjct: 101 GCSMQHLDMRAQVAVKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVAKK 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 161 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSEV 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R+L+    +    LR      K Q  L  +   T        V    T+  
Sbjct: 220 TALVL----RVLEPINADDEALLRAFADEHKVQFWLQPKGPDTVAPFYPLDVSLDYTLPE 275

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 276 FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREV 335

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E +      A  N   N V+                     F    D       F  
Sbjct: 336 MGIEGSDTLTTRALANARENGVDGHTTFAC-----------RNLFEVTGDDIRALGAFDK 384

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 385 FLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 444

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 445 GVVNMFPNTSHVESIALFER 464


>gi|317047525|ref|YP_004115173.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. At-9b]
 gi|316949142|gb|ADU68617.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. At-9b]
          Length = 374

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 138/382 (36%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL+EK   L Q++    V        SE   +R +A+  +    +    
Sbjct: 13  SCQWLEKPYPQQLSEKQSLLEQLLAQQTVGEWRTPVTSEEQGFRNKAKMVVSGSVERPVF 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLL---RAKLFQIDYLTSQSD 115
            M  +  +  +      +      + A++   +A   L P     +    +   LT  + 
Sbjct: 73  GMMSRAGEPIDLCACPLYPASFAAVFAVLKPFIARAGLTPYNVARKRGELKFLLLTESTQ 132

Query: 116 QAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
             ++     R       L  A      +L   L      IQ +  A      +I L  D 
Sbjct: 133 GGMMLRFVLRSDSKLAQLRAALPWLQQQLPQ-LTVISANIQPVHMAILEGDEEIALTPDQ 191

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
               L      +       SF Q N  +   +          +    + +L+CG G F L
Sbjct: 192 A---LAERFNHVPLYIRPQSFFQTNPQVAASLYATARDWVAQLGVSSMWDLFCGVGGFGL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    ++  +EI   ++  AR +     + NV    + S +F  A             
Sbjct: 249 HCASAEMQLTGIEINAEAIACARQSAQQLGLENVSFAALDSTQFATA------------- 295

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                  + + V+PPR G+       +   A  +ILY SCNP S+ +D++ LS  + + R
Sbjct: 296 --RDQVPELVLVNPPRRGIGTELCAYLSQMAPAYILYSSCNPHSMAQDIARLSA-YDVSR 352

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           + LFD FP+T H E   LL ++
Sbjct: 353 VQLFDMFPHTAHFEVLTLLTKR 374


>gi|301020623|ref|ZP_07184698.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           69-1]
 gi|300398599|gb|EFJ82137.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           69-1]
          Length = 375

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 138/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LL +
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLAK 374


>gi|325267375|ref|ZP_08134036.1| 23S rRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC
           33394]
 gi|324981170|gb|EGC16821.1| 23S rRNA (uracil-5-)-methyltransferase [Kingella denitrificans ATCC
           33394]
          Length = 435

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 133/375 (35%), Gaps = 26/375 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDG-D 56
              L    +  Q+A K     + +         ++          YR R    +      
Sbjct: 73  GCALQHADFAAQVAYKQRVFEEQLQRIGKVQPTVYLPPIYGNAWGYRSRTRLSVHITREG 132

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLIN---ALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           ++      + +   + +         ++    L+ EM+  I  + + + +L  +D    +
Sbjct: 133 EVRLGYQAKHSHRIVPVSQCPVLPPHVSGSLHLIREMLQQIHDQ-MPKNRLTAVDICAGE 191

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           +  A  ++   R L +                 +QI    +    +    +   +   T+
Sbjct: 192 AITAC-SIQCSRPLPEPIARQTAERLQQHSGTAWQIGQQCQKQPAQAIAPKSAPELYYTL 250

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               L        FTQ N  +N  M+   +        + +++L+CG GNF+L LAR   
Sbjct: 251 PEFNLHMPFRVGDFTQINLPMNAQMVARAVRLLDPQPHERIVDLFCGLGNFTLPLARSGA 310

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           R++ +E A      A+ N   N ++N++                  F+   D       F
Sbjct: 311 RIIGIEGADSLTRRAQANARRNGLDNIEFSTAD------------LFDTQPDTVAQWGHF 358

Query: 293 KTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             + +DPPR+G       +   Y    I+Y+SCNP +L RD ++L    +      + + 
Sbjct: 359 DKMLLDPPRAGALAVVQSLHAPYLPERIVYVSCNPATLARDAAVLVGKGYAFRAAGILNL 418

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E      R
Sbjct: 419 FPHTAHIEAVAWFER 433


>gi|302379451|ref|ZP_07267938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312796|gb|EFK94790.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Finegoldia magna
           ACS-171-V-Col3]
          Length = 496

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 145/377 (38%), Gaps = 48/377 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
             ++    YE++L  K + +    Q +    + ++ I  +   +YR + +  +    ++ 
Sbjct: 73  GCSMQDITYEKELEIKKNSVLNKLQRIAKLDIKDVDILTNAEYYYRNKVDLKV----ENG 128

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
               ++++T    +I      S  IN +                    I++L +Q+   I
Sbjct: 129 KLGYYNRKTHNLTQISTCKIASTAINEM--------------------INWLGNQNLNGI 168

Query: 119 VTLIYHRLLDDAWRECAIRLRDAL-HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
             +      +D  +     L D L    K   +++    K K   D  Y  ++       
Sbjct: 169 SEIKIRSNYNDEIQISLDYLSDQLLENLKTVDKIVEIYEKNKN-FDLIYRKKQFVDKIGD 227

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +     SF Q N      + +           D +L+LYCG G  ++ +  + +  + 
Sbjct: 228 LSFIISPKSFFQVNKYNTSLLYDTAKQMMNAEANDRILDLYCGIGTTTMYI-GNGNNTIG 286

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE+ K +V+ A  N   N++ +++ +   S+     + +E               F  I 
Sbjct: 287 VEVVKDAVKDANQNKKLNNLESIQFIEEKSENVVGKLTQE--------------HFDVIL 332

Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           VDPPR GLD   V  +       ++YISC+P +L RDL  L+     +  + L D F  T
Sbjct: 333 VDPPRKGLDPKVVDAIIKSTARKLVYISCDPATLARDLKALTENGFAVRDVKLVDMFAKT 392

Query: 354 RHMECGVLLVRKPSGWH 370
            H+E   LL +     H
Sbjct: 393 MHVETVALLSKLDVDKH 409


>gi|324009775|gb|EGB78994.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           57-2]
          Length = 375

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 140/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKAADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A+  L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIASAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +   A   I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPHFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|270261139|ref|ZP_06189412.1| 23S rRNA uracil-5-methyltransferase [Serratia odorifera 4Rx13]
 gi|270044623|gb|EFA17714.1| 23S rRNA uracil-5-methyltransferase [Serratia odorifera 4Rx13]
          Length = 375

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 136/383 (35%), Gaps = 41/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL +K   L+ ++    V   L+    E   +R +A+  +    +    
Sbjct: 13  SCQWLEKPYPQQLTDKQHHLQSLLAGRDVAQWLEPLAGEQSAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRIDYFM--PGSLL---------INALMIEMMATIRLEPLLRAKLFQIDY 109
            M  +     + +      P S           I    +      R    L+  L     
Sbjct: 73  GMLHRDG-TPVDLSACPLYPASFEPMFVVLKSFIARAGLTPYNVARKRGELKYLLLTEST 131

Query: 110 LTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDR 164
            +       V     +L  L  A      +L   L      IQ +  A    + +I L  
Sbjct: 132 HSGGVMLRFVLRSDSKLAQLRAALPWLQQQLPQ-LRVISANIQPVHMAIMEGEREIPLTE 190

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
               E        +       SF Q N  +   +        + +  D + +L+CG G F
Sbjct: 191 QQALEE---QFNQVPLYIRPQSFFQTNPQVAAKLYATARDWVRALGIDSMWDLFCGVGGF 247

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A+   R+  +EI+  ++  AR +     + +V    + S  F  A           
Sbjct: 248 GLHCAQPETRLTGIEISAEAIACARQSAETLGLQHVSFQALDSTRFATA----------- 296

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341
                    + + V+PPR G+  A    +   A  +ILY SCN +S+ +D+  L   + I
Sbjct: 297 ----EGSVPQLVLVNPPRRGIGQALCDYLNQMAPGYILYSSCNAESMAKDIEGLPD-YRI 351

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           ER+ LFD FP+T H E   LLVR
Sbjct: 352 ERVQLFDMFPHTAHYEVLTLLVR 374


>gi|26246882|ref|NP_752922.1| 23S rRNA methyluridine methyltransferase [Escherichia coli CFT073]
 gi|227884177|ref|ZP_04001982.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 83972]
 gi|300993463|ref|ZP_07180405.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           45-1]
 gi|301051213|ref|ZP_07198042.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           185-1]
 gi|50401587|sp|Q8FJE7|RUMB_ECOL6 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|26107282|gb|AAN79465.1|AE016758_69 Hypothetical RNA methyltransferase ybjF [Escherichia coli CFT073]
 gi|227838929|gb|EEJ49395.1| 23S rRNA methyluridine methyltransferase [Escherichia coli 83972]
 gi|300297120|gb|EFJ53505.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           185-1]
 gi|300406577|gb|EFJ90115.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           45-1]
 gi|307552702|gb|ADN45477.1| 23S rRNA uracil-5-methyltransferase [Escherichia coli ABU 83972]
 gi|315292534|gb|EFU51886.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           153-1]
          Length = 375

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 138/381 (36%), Gaps = 39/381 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLV 363
           R+ LFD FP+T H E   LLV
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLV 373


>gi|15800611|ref|NP_286625.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           EDL933]
 gi|15830193|ref|NP_308966.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. Sakai]
 gi|168750044|ref|ZP_02775066.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756654|ref|ZP_02781661.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4401]
 gi|168763290|ref|ZP_02788297.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4501]
 gi|168767370|ref|ZP_02792377.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776401|ref|ZP_02801408.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779412|ref|ZP_02804419.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787081|ref|ZP_02812088.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC869]
 gi|168799858|ref|ZP_02824865.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC508]
 gi|195936904|ref|ZP_03082286.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. EC4024]
 gi|208814964|ref|ZP_03256143.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822279|ref|ZP_03262598.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209399215|ref|YP_002269529.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325572|ref|ZP_03441656.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254792055|ref|YP_003076892.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. TW14359]
 gi|261225509|ref|ZP_05939790.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258522|ref|ZP_05951055.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281858|ref|YP_003498676.1| 23S rRNA (uracil-5-)-methyltransferase rumB (23S rRNA(M-
           5-U747)-methyltransferase) [Escherichia coli O55:H7 str.
           CB9615]
 gi|20455386|sp|Q8X6Q5|RUMB_ECO57 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725402|sp|B5YSF1|RUMB_ECO5E RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|12513874|gb|AAG55235.1|AE005266_14 putative enzyme [Escherichia coli O157:H7 str. EDL933]
 gi|13360398|dbj|BAB34362.1| putative enzyme [Escherichia coli O157:H7 str. Sakai]
 gi|187768226|gb|EDU32070.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4196]
 gi|188015750|gb|EDU53872.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002792|gb|EDU71778.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356313|gb|EDU74732.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363523|gb|EDU81942.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366522|gb|EDU84938.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373116|gb|EDU91532.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC869]
 gi|189377769|gb|EDU96185.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC508]
 gi|208731612|gb|EDZ80300.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737764|gb|EDZ85447.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160615|gb|ACI38048.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. EC4115]
 gi|209775338|gb|ACI85981.1| putative enzyme [Escherichia coli]
 gi|209775340|gb|ACI85982.1| putative enzyme [Escherichia coli]
 gi|209775342|gb|ACI85983.1| putative enzyme [Escherichia coli]
 gi|209775344|gb|ACI85984.1| putative enzyme [Escherichia coli]
 gi|209775346|gb|ACI85985.1| putative enzyme [Escherichia coli]
 gi|217321793|gb|EEC30217.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254591455|gb|ACT70816.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli O157:H7 str.
           TW14359]
 gi|290761731|gb|ADD55692.1| 23S rRNA (uracil-5-)-methyltransferase rumB (23S rRNA(M-
           5-U747)-methyltransferase) [Escherichia coli O55:H7 str.
           CB9615]
 gi|320192660|gb|EFW67301.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320637725|gb|EFX07517.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. G5101]
 gi|320642849|gb|EFX12050.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H-
           str. 493-89]
 gi|320648306|gb|EFX16961.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H-
           str. H 2687]
 gi|320654143|gb|EFX22211.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659767|gb|EFX27323.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664237|gb|EFX31388.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. LSU-61]
 gi|326338251|gb|EGD62080.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|326346228|gb|EGD69966.1| 23S rRNA methyluridine methyltransferase [Escherichia coli O157:H7
           str. 1044]
          Length = 375

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQAQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALVERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIALEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|296157778|ref|ZP_06840612.1| RNA methyltransferase, TrmA family [Burkholderia sp. Ch1-1]
 gi|295892024|gb|EFG71808.1| RNA methyltransferase, TrmA family [Burkholderia sp. Ch1-1]
          Length = 472

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 134/382 (35%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIW--HDG 55
             ++       Q+A K   L   +        + +FR        YR RA   +    + 
Sbjct: 108 GCSMQHLDIRAQVAVKQRVLEDNLQHLAKLRPETVFRPIHGPSWGYRYRARLAVRFLPEK 167

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +R   +   ++ Q++     S 
Sbjct: 168 GGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIY-DRMPQLELAVGSSV 226

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R L+         LRD     K Q  L      T          +D  L  
Sbjct: 227 TALVV----RNLEPITAADEQVLRDFADEHKVQFWLQPGGPDTVTPFYPLDVQLDYTLPE 282

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 283 YGIRMPFK--PTDFTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISK 340

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ +E ++     A  N   N +               +      F    D       F
Sbjct: 341 EVMGIEGSEVLTSRALANAELNGMAGHT-----------SFACRNLFEVTADDMRALGHF 389

Query: 293 KTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTIE 342
               +DPPR G       + +            I+Y+SC P +L RD  +L     + + 
Sbjct: 390 DKFLIDPPREGALAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLV 449

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
              + + FP+T H+E   L  R
Sbjct: 450 GAGVVNMFPHTSHVESIALFER 471


>gi|146328742|ref|YP_001209970.1| 23S rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
 gi|146232212|gb|ABQ13190.1| 23S rRNA methyltransferase [Dichelobacter nodosus VCS1703A]
          Length = 424

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 150/371 (40%), Gaps = 33/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L     ++QL  K       +        +        +   YR RA   + ++ D 
Sbjct: 77  GCALQHWHSQEQLLGKQKLWLTQLQRLGGAQPEHVLLPLAGKEWRYRRRARLAVHYENDV 136

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +      +++ + + ++  +     + A +  +     L  LL  K+ +I     +   A
Sbjct: 137 IAVGFKAKRSHDVVAVNDCLILQEHLAAALPLLPD--FLRALLPVKVDEILLTAGEKVAA 194

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +      R L  AW E    L  A H + ++           +            ++G T
Sbjct: 195 LTLRTKKRALSPAWGEKWANLAGA-HWQLWENDRCLFGEPNDLYYQ--------PISGVT 245

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLA 236
           L +    + F Q NA +N  +++ VLA    ++  ++L+L+ G GNFSL LA    RV A
Sbjct: 246 LHF--TPDDFIQVNASVNEALIQTVLAWLAPLEKSEVLDLFSGLGNFSLPLAYKGARVTA 303

Query: 237 VEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           VE  +  V+      A   + + +++  M     + A  +                 K+ 
Sbjct: 304 VEGVRAMVQRGAKMAAEQQLSSRLEMQCMDLFSVSAAQMK------------SWQSAKSW 351

Query: 296 FVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
            +DPPR+G       + + +P  I+Y+SCNP +L RD++IL S    +ER  + + F ++
Sbjct: 352 LLDPPRAGAHAVVQALPKKFPEKIVYVSCNPATLARDVAILQSKGFHLERGQVVNMFAHS 411

Query: 354 RHMECGVLLVR 364
            H+E  +L+ R
Sbjct: 412 AHIESVILMTR 422


>gi|77967332|gb|ABB08712.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia sp. 383]
          Length = 434

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 130/380 (34%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + +    
Sbjct: 70  GCSMQHLDMRAQVAVKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVAKK 129

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 130 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGL-SIRDRMPQIELAVGSEV 188

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R+L+    +    LR      K Q  L  +   T        V    T+  
Sbjct: 189 TALVL----RVLEPINADDEALLRAFADEHKVQFWLQPKGPDTVAPFYPLDVSLDYTLPE 244

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR    V
Sbjct: 245 FGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREV 304

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + +E +      A  N   N V+                     F    D       F  
Sbjct: 305 MGIEGSDTLTTRALANARENGVDGHTTFAC-----------RNLFEVTGDDIRALGAFDK 353

Query: 295 IFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHTIERL 344
             +DPPR G      A   + Q         I+Y+SCNP +L RD  +L     + ++  
Sbjct: 354 FLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGA 413

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + + FP T H+E   L  R
Sbjct: 414 GVVNMFPNTSHVESIALFER 433


>gi|293610392|ref|ZP_06692693.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827624|gb|EFF85988.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 463

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 148/375 (39%), Gaps = 27/375 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDD 57
             ++      +Q+  K + L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPNEQIRLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKP 157

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
              IM   +     R+      S+L   L   +     L   L+ K        ++ D  
Sbjct: 158 DRLIM-GFREHHSNRLTSIHSCSVLDKNLSNSLPELRTLLQSLKGKAHIGHVELAKGDNE 216

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  L+ H  ++        +L+     + + + L  +  ++   +D +    RL  A   
Sbjct: 217 ISLLVRH--VEKLNNSDVNQLKQFALHKGWHLYLQPKGPESIHRIDDEQGALRLHYALER 274

Query: 178 LI--YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR- 233
               +      FTQ NA +N  M++      +   G+ +L+L+CG GNFSL LAR     
Sbjct: 275 FNVNFAFSPLDFTQVNATVNEQMVQLACELLQLQPGEKVLDLFCGLGNFSLPLARCVGES 334

Query: 234 --VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE ++  V+ A  N   N +         S++ T+        N+          
Sbjct: 335 GQVVGVEGSEEMVQRATANAECNSLVQATFF---SQDLTKDFSHHSWANQ---------G 382

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
           F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ D 
Sbjct: 383 FDALLIDPPRAGAYEIMQYVSNFGAKRIVYVSCNPATLARDAGVLVQYGYQLKKAAVMDM 442

Query: 350 FPYTRHMECGVLLVR 364
           F +T H+E   L  +
Sbjct: 443 FTHTEHVESIALFEK 457


>gi|160900061|ref|YP_001565643.1| 23S rRNA 5-methyluridine methyltransferase [Delftia acidovorans
           SPH-1]
 gi|160365645|gb|ABX37258.1| RNA methyltransferase, TrmA family [Delftia acidovorans SPH-1]
          Length = 490

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 142/396 (35%), Gaps = 44/396 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              +       Q+A K   L   +        +            YR R+   + +    
Sbjct: 103 GCKMQHLHVGAQVAIKQRVLEDNLWHLAKVKPETLLRPIEGPSWAYRFRSRLSVRYVAKK 162

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     +++++    ++        ++A+++ M A I      R    QI+     S 
Sbjct: 163 GKVLVGFHERKSRYIADMETCKILPPHVDAMLLPMRALIASMDA-RETCPQIEVACGDSV 221

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLTV 173
            A+V     R L+        RLR        Q  L  +   T   +++    +D  L  
Sbjct: 222 TALVL----RHLEPLSENDQARLRAFAVEHNVQWWLQPKGPDTVHLMEQGGAQLDYGLPD 277

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G T+ ++     FTQ N  IN  ++   L      + + +++ +CG GNF+L LA    
Sbjct: 278 FGITMPFK--PTDFTQVNPHINRVLVTRALRLLDVKKDERVIDWFCGLGNFTLPLATQAR 335

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            VL +E +   V+ +  N AAN+    +  +++   F         F    ++       
Sbjct: 336 EVLGIEGSDTLVKRSHENYAANNAQRAEGDKLAPTRFV----ARNLFEMTPEMLFADGVA 391

Query: 293 KTIFVDPPRSG---LDDATVGMVQA-------------------YPHILYISCNPDSLCR 330
               VDPPR G   L  A   + QA                      I+Y+SCNP +L R
Sbjct: 392 GKWLVDPPREGAFALSKALADIHQARIGAEGAEPLPAGHEAWRFPERIVYVSCNPATLAR 451

Query: 331 DLSILS--TTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  +L     +      + + FP+T H+E   +  R
Sbjct: 452 DAGLLVHLAGYRCVSAGVVNMFPHTAHVESMAVFER 487


>gi|194438371|ref|ZP_03070461.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           101-1]
 gi|253774111|ref|YP_003036942.1| 23S rRNA methyluridine methyltransferase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160974|ref|YP_003044082.1| 23S rRNA methyluridine methyltransferase [Escherichia coli B str.
           REL606]
 gi|300929332|ref|ZP_07144805.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           187-1]
 gi|194422595|gb|EDX38592.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           101-1]
 gi|242376675|emb|CAQ31387.1| 23S rRNA m[5]U747 methyltransferase [Escherichia coli BL21(DE3)]
 gi|253325155|gb|ACT29757.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972875|gb|ACT38546.1| 23S rRNA m(5)U747-methyltransferase [Escherichia coli B str.
           REL606]
 gi|253977089|gb|ACT42759.1| 23S rRNA m(5)U747-methyltransferase [Escherichia coli BL21(DE3)]
 gi|300462678|gb|EFK26171.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           187-1]
 gi|323962972|gb|EGB58544.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H489]
          Length = 375

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + + +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWVRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDVREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|191166161|ref|ZP_03027995.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B7A]
 gi|209918108|ref|YP_002292192.1| 23S rRNA methyluridine methyltransferase [Escherichia coli SE11]
 gi|293433157|ref|ZP_06661585.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B088]
 gi|307311753|ref|ZP_07591393.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli W]
 gi|309795346|ref|ZP_07689764.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           145-7]
 gi|226725407|sp|B6I8H9|RUMB_ECOSE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|190903770|gb|EDV63485.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B7A]
 gi|209911367|dbj|BAG76441.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|291323976|gb|EFE63398.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli B088]
 gi|306908308|gb|EFN38807.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli W]
 gi|308120996|gb|EFO58258.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           145-7]
 gi|315060144|gb|ADT74471.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli W]
 gi|323379298|gb|ADX51566.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli KO11]
 gi|324015943|gb|EGB85162.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           117-3]
          Length = 375

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDVREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|318606312|emb|CBY27810.1| 23s rRNA (Uracil-5-)-methyltransferase rumB [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 375

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 145/386 (37%), Gaps = 45/386 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K + L  ++   +V   L     +   +R +A+  +    +    
Sbjct: 13  SCQWLDKPYPQQLADKQNHLENLLSDHRVTQWLSPVFGQESAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCECPLYPASFAPVFAVLKTFIARAGLTPYNVARKRGELKFLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
              + +     V     +L  L  A      +L   L      IQ +  A    + +I L
Sbjct: 130 STYSGELMLRFVLRSQTKLAQLQAALPWLQQQLPQ-LAVISVNIQPVHMAILEGEQEIPL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
                 + L+     +       SF Q N  +   +        + ++ D + +L+CG G
Sbjct: 189 TE---QQALSEIFNQVPLFIRPQSFFQTNPQVAASLYATARQWVRELKIDSMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    R+  +EI+  ++  AR +     + NV    + S +F  A         
Sbjct: 246 VFGLHCADTETRLTGIEISAEAIACARQSADQLGLKNVTFAALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTH 339
                  +   + + V+PPR G+       + Q  P  ILY SCN +++ +D+S+L+  +
Sbjct: 297 ------ETQVPQLVLVNPPRRGIGAQLCEYLSQMAPQFILYSSCNAETMAKDISLLTD-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            IER+ LFD FP+T H E   LL+++
Sbjct: 350 RIERVQLFDMFPHTAHYEVLTLLIKR 375


>gi|226940771|ref|YP_002795845.1| RumA [Laribacter hongkongensis HLHK9]
 gi|226715698|gb|ACO74836.1| RumA [Laribacter hongkongensis HLHK9]
          Length = 516

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 146/382 (38%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             ++   ++  Q+A K   L   +      + ++           YR R           
Sbjct: 75  GCSMQHVEFNAQVAVKQRVLEDNLAHIGKVSPEVVLPPIYGPQWGYRHRGRLSARFVAKK 134

Query: 58  L--YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   ++++     ++        I+ L++ + A I     +  ++ Q++Y   +  
Sbjct: 135 NTVLIGFHEKRSSFIADMEECHILPQRISDLLMPLRALI-ASLSISQRMPQVEYAGGEDL 193

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ----IQLIGRANKTKIC-----LDRDY 166
             +V     R +D    E   R+R             +Q   +      C     LD   
Sbjct: 194 DVLVL----RNMDPLTSEDESRIRAFADHHNANRLLPLQFWLQPKGPDSCYPFYPLDAPA 249

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           +  RL   G  + Y+  E  FTQ N GIN  ++   L       G+ + +++CG GNF+L
Sbjct: 250 LCYRLPEFGVEMPYKPTE--FTQVNPGINRVLVSRALKLLDPQPGERIADMFCGLGNFTL 307

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +AR    VL +E ++  +E A  N   N +      RM+             F+   + 
Sbjct: 308 PIARSGAVVLGMEGSQQLIERAVQNATHNGLEKTVRYRMA-----------NLFDVTPES 356

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL--STTHTIE 342
                RF  + +DPPR G       +    P  I+Y+SC+P +L RD ++L  +  +T+ 
Sbjct: 357 FAKLGRFDKMLIDPPRDGAVALCKSLGDNGPKRIVYVSCSPSTLARDAAVLVHTQGYTLR 416

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
              + + FP+T H+E   L  +
Sbjct: 417 AAGIVNMFPHTAHVESIALFEK 438


>gi|159897144|ref|YP_001543391.1| RNA methyltransferase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890183|gb|ABX03263.1| RNA methyltransferase, TrmA family [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 423

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 140/367 (38%), Gaps = 42/367 (11%)

Query: 9   QY---EQQLAEKVDRLRQMMLAF-QVPNLQIFR---SEPIHYRMRAEFHIWHDGDDLYHI 61
           QY   E Q   K   L + +    Q  + ++      EP HYR  A  H+    D     
Sbjct: 87  QYQMIESQRQAKQTILAEQLRFVAQTDHAEVAATAAGEPWHYRSVARVHV----DGQRVG 142

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
            +    ++ +  D  +     +NA +  +   + L       L +I    S +D  I   
Sbjct: 143 FYAAGGRQIVEFDQCLIIDPRLNATIERLKPLLPLIG-----LREISLRLSTTDGTIHGH 197

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +       AWR  A R   A                       +Y+ E+L      +  R
Sbjct: 198 LIG-QGQSAWRSWARRWMSADATIAGVSSATREGWMA--LAGAEYLYEQLG----DVRLR 250

Query: 182 QIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
               SF Q N      +L+ +           LL+ +CG G F L LA +      +E  
Sbjct: 251 IAPTSFFQANVERARAVLQQIECFLPLNNTTRLLDGFCGVGTFLLPLAHNIGHGWGIEEH 310

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++  A+ +  AN ++NV +     +     +++               +F    VDPP
Sbjct: 311 PAAIRDAQASAKANQLSNVTLKTGKVEAILPQLKQ---------------QFDLAIVDPP 355

Query: 301 RSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           R G++ A +  ++ A P  I Y+SC+P +L RD+ +L +  +TI+     D FP T H+E
Sbjct: 356 RRGVEPAALNALIAAQPTMIAYVSCHPGTLARDIKLLQAGGYTIQHAQPHDFFPQTSHVE 415

Query: 358 CGVLLVR 364
             VLL +
Sbjct: 416 SLVLLSK 422


>gi|170681470|ref|YP_001742967.1| 23S rRNA methyluridine methyltransferase [Escherichia coli SMS-3-5]
 gi|226725408|sp|B1LN12|RUMB_ECOSM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|170519188|gb|ACB17366.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           SMS-3-5]
          Length = 375

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVNHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDIQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGIPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|293396875|ref|ZP_06641149.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Serratia odorifera DSM
           4582]
 gi|291420346|gb|EFE93601.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Serratia odorifera DSM
           4582]
          Length = 375

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 139/385 (36%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K   L+ ++   QV   L     +   +R +A+  +    +    
Sbjct: 13  SCQWLEKPYSQQLADKQHHLQTLLAGRQVAQWLAPAAGQQGAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCACPLYPASFAPMLTLLKTFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICL 162
             L  +     V     +L  L  A      RL  A       +     I    +     
Sbjct: 130 STLNGEVMLRFVLRSESKLTQLRAALPWLQQRLPQATVISANIQPVHMAILEGEREIPLT 189

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
           +R  ++ER       +       SF Q N  +   +        + +  D + +L+CG G
Sbjct: 190 ERQALEERF----NQVPLYIRPQSFFQTNPQVAADLYATARDWVQALAIDSMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  AR   R+  +EI   ++  AR + AA  +  V    + S  F  A         
Sbjct: 246 GFGLHCARAQTRLTGIEINAEAIACARQSAAALGLRQVNFQALDSTHFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTH 339
                      + + V+PPR G+  A    +   A  +ILY SCN  S+ +DL++L   +
Sbjct: 297 ------EGEVPQLVLVNPPRRGIGQALCDYLHRMAPDYILYSSCNAQSMAKDLAMLPD-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            IER+ LFD FP+T H E   LLVR
Sbjct: 350 RIERVQLFDMFPHTAHYEVLTLLVR 374


>gi|256390841|ref|YP_003112405.1| RNA methyltransferase, TrmA family [Catenulispora acidiphila DSM
           44928]
 gi|256357067|gb|ACU70564.1| RNA methyltransferase, TrmA family [Catenulispora acidiphila DSM
           44928]
          Length = 455

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 137/376 (36%), Gaps = 42/376 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE---PIHYRMRAEFHIWHDGDDL 58
                   YE QL  K + + + +      + ++   E   P  +R R +F +  DG   
Sbjct: 104 GCDWQHASYEAQLRIKGEVVAEQLRRLAKLDREVVVEEVASPFGWRTRVQFAVDPDGSL- 162

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
                  ++ E + ++     S  ++ +         +E        ++   T  +D+A+
Sbjct: 163 --GFRKHRSHEVVPVEECAIASSGVDEVGALGRQWPGVE------TVEVIAATGSNDRAL 214

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V                        +    +      +  +    R YV E         
Sbjct: 215 VVTPKRGESMPFVDADVKA------SVLRGVSRNTHISGVQRIHGRPYVREV----AEGR 264

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDR---V 234
            +R   + F Q +      + E VL       GD+ L+LYCG G F+  LA        V
Sbjct: 265 TWRVSGSGFWQVHPAAPDVLTEAVLDFLDPKDGDVALDLYCGVGLFAAPLAEAVGESGAV 324

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ----AMRREREFNRLKDIDIHSY 290
           LAVE+ + +V  A +N+              ++E T+     +        L D      
Sbjct: 325 LAVELDRQAVRDAAHNLG---------FADDAEESTEFPWVDLVEGSVDEVLADEGYVPD 375

Query: 291 RFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALF 347
           R   + +DPPR+G        + A     + Y++C+P +L RD++ L+   + +  L  F
Sbjct: 376 RADVVVLDPPRAGAGRDVCARIAALGPRAVAYVACDPAALARDVAYLAEAGYELTDLRAF 435

Query: 348 DQFPYTRHMECGVLLV 363
           D FP TRH+EC  LL 
Sbjct: 436 DLFPMTRHVECVALLE 451


>gi|331646127|ref|ZP_08347230.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M605]
 gi|330910641|gb|EGH39151.1| 23S rRNA (Uracil-5-) -methyltransferase rumB [Escherichia coli
           AA86]
 gi|331044879|gb|EGI17006.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli M605]
          Length = 375

 Score =  206 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 138/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L     IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|238893918|ref|YP_002918652.1| 23S rRNA methyluridine methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546234|dbj|BAH62585.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 375

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 144/382 (37%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L     QQLA+K+  LR ++ A  V    +        +R +A+  +    +    
Sbjct: 13  SCQWLERPVPQQLADKMADLRTLLAAIPVAAWGEPVSGPEAAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +     +      +  G   + A +   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLHRDGTPVDLTDCPLYPAGFAPVFAALKPFIARAGLTPYNVARKRGELKYLLLTASQQ 132

Query: 115 DQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
            + ++  +         L  A      +L   L      IQ +  A    + +I      
Sbjct: 133 GEMMLRFVLRSEAKVAQLRAALPWLQAQLPQ-LSVITANIQPVHMAIMEGEQEIFFTE-- 189

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + +    + +L+CG G F L
Sbjct: 190 -QQALGEVFNGVPLWIRPQSFFQTNPAVASRLYATARDWVRALPVQHMWDLFCGVGGFGL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    R+  +EIA  ++  AR + A   ++N+    + S +F                
Sbjct: 249 HCATPTMRLTGIEIAPEAIACARQSAAQLGLSNLHFQALDSTQFAT-------------- 294

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
              +   + + V+PPR G+       +   A P+I+Y SCN  ++  D++ LS  + +ER
Sbjct: 295 -HEADAPQLVLVNPPRRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLS-GYRVER 352

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           + LFD FP+T H E   LLVR+
Sbjct: 353 VQLFDMFPHTAHYEVLTLLVRE 374


>gi|206890432|ref|YP_002249201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742370|gb|ACI21427.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 389

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 67/371 (18%), Positives = 134/371 (36%), Gaps = 70/371 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPN----LQIFRSEPIHYRMRAEFHIWHD 54
             +     Y  Q+  K   + + +     F+ P     L +    P +YR RA+F I   
Sbjct: 76  GCSFQHVAYSYQIKLKEIVVMEQLKRIGGFENPEDFTNLTLKAESPYNYRNRADFSINRQ 135

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
               + I   + T + + ++        IN ++  +                        
Sbjct: 136 NLLGFKI---RGTHKFLHVECCHIMHDKINKMLSLLQGKKPKR----------------- 175

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
                            +   I +R  ++   + IQ     +  +I   + +  ERL   
Sbjct: 176 -----------------KSHNITIRYGINTGTWLIQPEM--DTVEIETGQKFYYERLLGK 216

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                +     SF Q N      +++ VL         +++ Y G G F++ LA+  ++V
Sbjct: 217 D----FIISAPSFFQVNTYQAEKLIQTVLNYITQEDKTVIDAYAGVGTFTVFLAQKAEKV 272

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +A+E ++ + + A+ NI   + +N+  +   ++E                +         
Sbjct: 273 IAIEESRSAYKDAQINIK--NFDNITYLCKKTEE---------------ALFESKINGDA 315

Query: 295 IFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           I +DPPR G     +  +  +    ++Y+SC P +L RDL  L    + ++ +   D FP
Sbjct: 316 IVIDPPRVGCMKEVLQAIAEKKIKKVIYVSCEPSTLARDLKYLKEMGYKLKEIQPVDMFP 375

Query: 352 YTRHMECGVLL 362
            T H+E   L+
Sbjct: 376 QTYHIENVALM 386


>gi|206577069|ref|YP_002239492.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae
           342]
 gi|206566127|gb|ACI07903.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae
           342]
          Length = 375

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 143/382 (37%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L     QQLA+K+  LR ++ A  V    +        +R +A+  +    +    
Sbjct: 13  SCQWLERPVPQQLADKMADLRTLLAAIPVAAWGEPVSGPETAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +     +      +      + A++   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLHRDGTPVDLTDCPLYPSSFAPVFAVLKPFIARAGLTPYNVARKRGELKYLLLTASQQ 132

Query: 115 DQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
            + ++  +         L  A      +L   L      IQ +  A    K +I      
Sbjct: 133 GEMMLRFVLRSEAKLAQLRAALPWLQAQLPQ-LKVITANIQPVHMAIMEGKQEIFFTE-- 189

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + +    + +L+CG G F L
Sbjct: 190 -QQALGEVFNEVPLWIRPQSFFQTNPAVASRLYATARDWVRALPVQHMWDLFCGVGGFGL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    R+  +EIA  ++  AR + A   ++N+    + S +F                
Sbjct: 249 HCATPAMRLTGIEIAPEAIACARQSAAQLGLSNLHFQALDSTQFAT-------------- 294

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
              +   + + V+PPR G+       +   A P+I+Y SCN  ++  D++ L   + +ER
Sbjct: 295 -HEADIPQLVLVNPPRRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARL-RGYRVER 352

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           + LFD FP+T H E   LLVR+
Sbjct: 353 VQLFDMFPHTAHYEVLTLLVRE 374


>gi|330980189|gb|EGH78360.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 427

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 141/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 75  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDDWAAPLSGAELAYRRRARVAVRWDAKA 134

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 135 KRLEVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKSFSKPQA-LGHVELFSG--- 190

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 191 --VATAVLLRHTAPLAEADLALLQAFCSRHGAQLWLHGEGEPQPASPG-DTLGYRLEPWN 247

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  +      + + +++L+CG GNF+L LA     V
Sbjct: 248 LHLAWR--PGDFIQVNAAVNTAMIEQAMQWLAPAKDERVMDLFCGLGNFALPLAGLAREV 305

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 306 VAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLAHADWAAEGFSA 353

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD   L    + ++R  + D FP 
Sbjct: 354 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQ 413

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 414 TAHVEAMALFE 424


>gi|188495997|ref|ZP_03003267.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           53638]
 gi|188491196|gb|EDU66299.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           53638]
          Length = 375

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V     +       +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVVEWCALVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L     IE
Sbjct: 297 ---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|330817172|ref|YP_004360877.1| RNA methyltransferase, TrmA family protein [Burkholderia gladioli
           BSR3]
 gi|327369565|gb|AEA60921.1| RNA methyltransferase, TrmA family protein [Burkholderia gladioli
           BSR3]
          Length = 464

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 139/384 (36%), Gaps = 41/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +   S        YR RA   + +    
Sbjct: 100 GCSMQHLDVRAQVAIKQRVLEDNLWHLAKLRSEAMFSPIHGPSWGYRYRARLTVRNVAKK 159

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++AL++ +   +     +  ++ QI+     S 
Sbjct: 160 GGVLVGFHEKKSSYVADMTSCEVLPPHVSALLVPLRRLVEGL-SISDRMPQIELAVGSSV 218

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLT 172
            A+V     R+L+         LR+   A + Q  L  +   +      LD+  +D  L 
Sbjct: 219 TALVL----RVLEPINAADEALLREFADAHQVQFWLQPKGPDSVFPFYPLDKS-LDYTLP 273

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
                + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR  
Sbjct: 274 EFNIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPRREDRVLDLFCGIGNFTLPLARLS 331

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             V+ +E +      A  N   N V+ +      +  E T    R               
Sbjct: 332 REVVGIEGSDALTTRALANAKENGVDGHTSFACRNLFEVTADDLRAL------------G 379

Query: 291 RFKTIFVDPPRSGL---DDATVGMVQ-----AYPHILYISCNPDSLCRDLSIL--STTHT 340
            F    VDPPR G      A   + Q         I+Y+SCNP +L RD  +L     + 
Sbjct: 380 AFDKFLVDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPATLARDAGLLVHEAGYR 439

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +    + + FP T H+E   +  R
Sbjct: 440 LRGAGVVNMFPNTSHVESIAVFER 463


>gi|256544922|ref|ZP_05472293.1| TrmA family tRNA methyltransferase [Anaerococcus vaginalis ATCC
           51170]
 gi|256399421|gb|EEU13027.1| TrmA family tRNA methyltransferase [Anaerococcus vaginalis ATCC
           51170]
          Length = 415

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 151/369 (40%), Gaps = 36/369 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
             +++   Y+ Q+  K + ++  +      ++ +L+I   +   YR +    I  +G   
Sbjct: 76  GCSIMDINYKSQIKLKKNLIKNALLKSAKIKIDDLEILEGKEFGYRNKIRLQINKNGKLA 135

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           Y+  +   + + + I   +    LI   + ++      + + +     ++ +T ++++  
Sbjct: 136 YNKKY---SNDLVEIKDCLLAKDLIRKNLEKIEE--ITKDITKKYPNSLEEITIRANEKE 190

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           + L      +    +    +++      Y I LI +     I   ++Y+   L       
Sbjct: 191 ILLNIKIKDE----KIIPYIKNQYKNSTYNINLINKKETINIS-GKNYLVYNLLGK---- 241

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
            ++   N F Q N  +   + +       G    +L+L+CG+   S+ +  + D V+ +E
Sbjct: 242 KFKITMNDFYQVNDYMTEKLYKTAKD-FLGENQKVLDLFCGSATSSIAI--NDDHVVGIE 298

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I K +++ A+ N   N + + K +  ++             N + D  I   +   I +D
Sbjct: 299 INKNAIKDAKANAKENDLKDYKFIAKNA-------------NYIDDKFIKKEKIDAIVLD 345

Query: 299 PPRSGLDDATVGMVQAYPHI--LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           PPR GLD   +  +        +YISCNP +L RD+       + +E++   D F  T H
Sbjct: 346 PPRRGLDKEIIKTIAKTKIKKIVYISCNPQTLARDIKRFQEKGYKLEKIKGCDMFSETMH 405

Query: 356 MECGVLLVR 364
           +E   L+ R
Sbjct: 406 VEMVALIAR 414


>gi|82543347|ref|YP_407294.1| 23S rRNA methyluridine methyltransferase [Shigella boydii Sb227]
 gi|123560143|sp|Q323P2|RUMB_SHIBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|81244758|gb|ABB65466.1| putative enzyme [Shigella boydii Sb227]
 gi|320183201|gb|EFW58059.1| 23S rRNA methyluridine methyltransferase [Shigella flexneri CDC
           796-83]
 gi|332097262|gb|EGJ02245.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella boydii
           3594-74]
          Length = 375

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 138/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L     IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|91687422|gb|ABE30622.1| 23S rRNA m(5)U-1939 methyltransferase [Burkholderia xenovorans
           LB400]
          Length = 434

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 136/383 (35%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIW--HDG 55
             ++       Q+A K   L   +        + +FR        YR RA   +    + 
Sbjct: 70  GCSMQHLDIRAQVAVKQRVLEDNLQHLAKLRPETVFRPIHGPSWGYRYRARLAVRFLPEK 129

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +R   +   ++ Q++     S 
Sbjct: 130 GGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIY-DRMPQLELAVGSSV 188

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R L+         LRD     K Q  L      T          +D  L  
Sbjct: 189 TALVV----RNLEPITAADEQVLRDFADEHKVQFWLQPGGPDTVTPFYPLDVQLDYTLPE 244

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 245 YGIRMPFK--PTDFTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISK 302

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E ++     A  N   N V  +      +  E T    R                
Sbjct: 303 EVMGIEGSEVLTSRALANAGLNGVAGHTSFECRNLFEVTADDLRAL------------GH 350

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    +DPPR G       + +            I+Y+SC P +L RD  +L     + +
Sbjct: 351 FDKFLIDPPREGALAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRL 410

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + + FP+T H+E   L  R
Sbjct: 411 VGAGVVNMFPHTSHVESIALFER 433


>gi|329118081|ref|ZP_08246793.1| 23S rRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327465741|gb|EGF12014.1| 23S rRNA (uracil-5-)-methyltransferase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 452

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 139/374 (37%), Gaps = 31/374 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             ++   ++E Q+A K   + +          Q   +       HYR R       DG  
Sbjct: 99  GCSMQHIRFEAQVALKQRVVEEQFARIGGLRPQQMLAPVYGAAWHYRERGRLGAETDGRG 158

Query: 58  LYHIMFDQQTKERMR-IDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSD 115
              I F  +   R+  +         ++  +  +   +  L  +LR   F +    +   
Sbjct: 159 RLKIGFRAKKSNRIAAVQSCKVLPSHLSDALPLLQTALQPLADVLRGIAFAVGGRRTA-- 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              + L+  +   +  R     L   L    + I       +  +   +D +  RL    
Sbjct: 217 ---LCLLTDKRPSEKQRGVLRNLSQELGG-DWLISWQYGVGEEMLYEGQDGLSYRLADFD 272

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + +      FTQ NA +N  M+   +       GD + +L+CG GNF+L LA+   +V
Sbjct: 273 IEMPFCV--GDFTQANAAVNNIMVRRAVDMLDPAHGDKIADLFCGLGNFTLPLAQSGAQV 330

Query: 235 LAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           + VE +   V  A  N   N    NV     +   F    R+ R +              
Sbjct: 331 VGVEGSPALVRRAAGNARLNGFGGNVSFEVANL--FKTGGRQSRIWQ----------NAD 378

Query: 294 TIFVDPPRSGLDDAT--VGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
            + +DPPR+G  +    +G+ +    I+Y+SCNP +  RD ++L    +  + L L + F
Sbjct: 379 KLLIDPPRAGAYEIVKSLGLSRQPDRIVYVSCNPATFARDAAVLVDKGYKFKLLGLVNLF 438

Query: 351 PYTRHMECGVLLVR 364
           P T H+E      R
Sbjct: 439 PQTEHVESVGCFER 452


>gi|289648123|ref|ZP_06479466.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 451

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 143/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANAVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQA-LGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 215 --VATAVLLRHTAPLAEADLALLQAFCSKHGAQLWLHGDGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAKEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCN  +L RD + ++S  + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNSATLARDTVELISQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|157056867|gb|ABV02450.1| hypothetical protein [Arcobacter nitrofigilis DSM 7299]
          Length = 179

 Score =  206 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 91/178 (51%), Positives = 124/178 (69%), Gaps = 1/178 (0%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           FTQPN  +N+ M+EWVL      + DL ELYCG GNF++ L+  F++VLA EI+K S+ +
Sbjct: 1   FTQPNTKVNIKMIEWVL-NNIETKDDLCELYCGGGNFTIPLSTKFNKVLATEISKTSINS 59

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  N   N++ N+  +RMS++EF +A+   REF RLKDI++  Y F TIFVDPPRSGLDD
Sbjct: 60  ALLNCELNNITNIDFIRMSAEEFVEALNSVREFRRLKDINLSDYNFSTIFVDPPRSGLDD 119

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            T  +V+ Y  I+YISCNP++L RDL  L  +H I   +LFDQF Y+ H+E GV+L +
Sbjct: 120 TTRELVKNYEQIIYISCNPETLHRDLKELIKSHQILNFSLFDQFSYSGHIETGVILKK 177


>gi|290510604|ref|ZP_06549974.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. 1_1_55]
 gi|289777320|gb|EFD85318.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. 1_1_55]
          Length = 375

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 142/382 (37%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L     QQLA+K+  LR ++ A  V    +        +R +A+  +    +    
Sbjct: 13  SCQWLERPVPQQLADKMADLRTLLAAIPVAAWGEPVSGPETAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +     +      +      + A++   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLHRDGTPVDLTDCPLYPSSFAPVFAVLKPFIARAGLTPYNVARKRGELKYLLLTASQQ 132

Query: 115 DQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
            + ++  +         L  A      +L   L      IQ +  A    K +I      
Sbjct: 133 GEMMLRFVLRSEAKLAQLRAALPWLQAQLPQ-LKVITANIQPVHMAIMEGKQEIFFTE-- 189

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + +    + +L+CG G F L
Sbjct: 190 -QQALGEVFNEVPLWIRPQSFFQTNPAVASRLYATARDWVRALPVQHMWDLFCGVGGFGL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    R+  +EIA  ++  AR + A   ++N+    + S +F                
Sbjct: 249 HCATPAMRLTGIEIAPEAIACARQSAAQLGLSNLHFQALDSTQFAT-------------- 294

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                  + + V+PPR G+       +   A P+I+Y SCN  ++  D++ L   + +ER
Sbjct: 295 -HEDDIPQLVLVNPPRRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARL-RGYRVER 352

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           + LFD FP+T H E   LLVR+
Sbjct: 353 VQLFDMFPHTAHYEVLTLLVRE 374


>gi|161621317|ref|YP_558674.2| 23S rRNA 5-methyluridine methyltransferase [Burkholderia xenovorans
           LB400]
 gi|143580804|sp|Q13Z67|RUMA_BURXL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 472

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 136/383 (35%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRS---EPIHYRMRAEFHIW--HDG 55
             ++       Q+A K   L   +        + +FR        YR RA   +    + 
Sbjct: 108 GCSMQHLDIRAQVAVKQRVLEDNLQHLAKLRPETVFRPIHGPSWGYRYRARLAVRFLPEK 167

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +R   +   ++ Q++     S 
Sbjct: 168 GGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIY-DRMPQLELAVGSSV 226

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R L+         LRD     K Q  L      T          +D  L  
Sbjct: 227 TALVV----RNLEPITAADEQVLRDFADEHKVQFWLQPGGPDTVTPFYPLDVQLDYTLPE 282

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      + D +L+L+CG GNF+L LAR   
Sbjct: 283 YGIRMPFK--PTDFTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISK 340

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ +E ++     A  N   N V  +      +  E T    R                
Sbjct: 341 EVMGIEGSEVLTSRALANAGLNGVAGHTSFECRNLFEVTADDLRAL------------GH 388

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--------AYPHILYISCNPDSLCRDLSIL--STTHTI 341
           F    +DPPR G       + +            I+Y+SC P +L RD  +L     + +
Sbjct: 389 FDKFLIDPPREGALAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRL 448

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + + FP+T H+E   L  R
Sbjct: 449 VGAGVVNMFPHTSHVESIALFER 471


>gi|332342247|gb|AEE55581.1| 23S rRNA methyluridine methyltransferase RumB [Escherichia coli
           UMNK88]
          Length = 375

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 138/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     QQL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPQQLSAKTADLKNLLADFPVVEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L     IE
Sbjct: 297 ---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|23822135|sp|Q8PMU6|RUMA_XANAC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 444

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 140/374 (37%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 88  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  + A I      +  + QI+++    D
Sbjct: 148 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPLLAALIEGMD-GKRDIPQIEFIAG-DD 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L +  R+  I      H     +Q  G  +   +      +  RL    
Sbjct: 206 AVALTIRHMQPLSERDRQAWITFAQE-HGFAIFLQPGGVDSVQPLWPQEVPLSFRLPQWD 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   +A  +    D +L+L+CG GNF+L LAR    V
Sbjct: 265 VELAFR--PLDFIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 323 VGVEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDK 370

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 371 LLLDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 430

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 431 HTAHVESIAVFERR 444


>gi|50121596|ref|YP_050763.1| 23S rRNA methyluridine methyltransferase [Pectobacterium
           atrosepticum SCRI1043]
 gi|97273716|sp|Q6D3S2|RUMB_ERWCT RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|49612122|emb|CAG75572.1| putative RNA methyltransferase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 375

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 134/382 (35%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL++K   L  ++    V   L +  S    +R +A+  +    +    
Sbjct: 13  SCQWLEKPYPQQLSDKQQHLEDLLQPHAVQRWLPVQPSAQTAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        D           F    + I    +      R    L+  L      
Sbjct: 73  GMLHRDGTAVDLCDCPLYPTSFAPVFDVLKVFIARAGLTPYNVARRRGELKYLLLTESTQ 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
                   V     +L  L  A      +L   L      IQ + +A    KT+I L   
Sbjct: 133 RGTFMLRFVLRSETKLAQLRAAMPWLQQQLPQ-LEVISANIQPVHQAIMEGKTEIILSDA 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
                L      +       SF Q N  +   +          ++   + +L+CG G F 
Sbjct: 192 AA---LAEQFNQVPLYIRPQSFFQTNPQVAAALYATARDWVAELKITSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    R+  +EI+  ++  AR +     + +V+   + S +F  A            
Sbjct: 249 LHCASSEMRLTGIEISAEAIACARRSAEQLGLKHVEFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +     + V+PPR G+       +   A  +ILY SCN +S+ +D++ L+  +   
Sbjct: 297 ---KAEIPDLVLVNPPRRGIGSELCSYLSRMAPDYILYSSCNAESMAKDMTELAN-YRAL 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LL R
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLKR 374


>gi|153217640|ref|ZP_01951321.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae 1587]
 gi|124113414|gb|EAY32234.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae 1587]
          Length = 168

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 107/165 (64%), Positives = 130/165 (78%), Gaps = 2/165 (1%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             T+  +GDLLELYCGNGNFSL LA++F+RVLA E+AK SVEAA++NIAAN + NV+I+R
Sbjct: 4   RCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKLSVEAAQFNIAANQIGNVQIIR 63

Query: 264 MSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           MS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  T  MVQ Y  ILYI
Sbjct: 64  MSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYI 123

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           SCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK 
Sbjct: 124 SCNPETLKENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERKK 168


>gi|91776203|ref|YP_545959.1| 23S rRNA 5-methyluridine methyltransferase [Methylobacillus
           flagellatus KT]
 gi|123078812|sp|Q1H069|RUMA_METFK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|91710190|gb|ABE50118.1| 23S rRNA m(5)U-1939 methyltransferase [Methylobacillus flagellatus
           KT]
          Length = 445

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 144/390 (36%), Gaps = 50/390 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
              +   ++  Q+A K   L   +        +            YR +A   + H    
Sbjct: 76  GCAIQHLEFSGQVAAKQRMLESNLWHIGKTRSERMLPPIYGPAWGYRHKARLRVRHVAKK 135

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++ +     +D        ++ L++ M   +     +R +L QI+    +  
Sbjct: 136 GGVLVGFNEKSSSFVADMDSCRVLPPHVSNLIVPMKELVGQL-SIRDRLPQIEVAVGE-- 192

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK---ICLDRDYVDERLT 172
             + T++  R+L+    + A  ++        ++    +   T      L    +   L 
Sbjct: 193 --LATVLVLRILEPLQPQDAAPIKAFADRYGVEVWTQSKGPDTVQPFYPLQGPGLSYSLP 250

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
               T  ++  E  FTQ N  IN  ML   +   +   G+ + + +CG GNF+L +AR  
Sbjct: 251 EFNLTYPFKPTE--FTQVNPYINRVMLRRAMQLLQPQPGERIADFFCGLGNFTLPIARSG 308

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             V  +E +   V  A  + A N +   V+       + T A+ +               
Sbjct: 309 ASVFGMEGSAALVARANESAALNSLAGQVEFQEADLFKMTPALLQSL------------G 356

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP--------------HILYISCNPDSLCRDLSIL- 335
           RF    +DPPR G     + +V+A P               I+Y+SCNP +L RD  IL 
Sbjct: 357 RFDKWLIDPPRDG----AIELVKALPDIEDADADTSHVPQRIVYVSCNPATLARDAGILV 412

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  + +    + + FP+T H+E   L  +
Sbjct: 413 HTKGYRLLASGVINMFPHTSHVESIALFEK 442


>gi|293412132|ref|ZP_06654855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B354]
 gi|291468903|gb|EFF11394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B354]
          Length = 223

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 20/234 (8%)

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
              +L    H+    + L   +   +         E        L        F Q NAG
Sbjct: 5   DREKLERFSHSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLRLTFSPRDFIQVNAG 59

Query: 194 INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           +N  M+   L       +  +L+L+CG GNF+L LA     V+ VE     VE  + N  
Sbjct: 60  VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNAR 119

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N ++NV     + +E             +         F  + +DP R+G       ++
Sbjct: 120 LNGLHNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQQII 167

Query: 313 QAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  P  I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E  VL  R
Sbjct: 168 KLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 221


>gi|33865762|ref|NP_897321.1| hypothetical protein SYNW1228 [Synechococcus sp. WH 8102]
 gi|50401510|sp|Q7U6V8|Y1228_SYNPX RecName: Full=Uncharacterized RNA methyltransferase SYNW1228
 gi|33632932|emb|CAE07743.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 465

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 136/393 (34%), Gaps = 46/393 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWH-DGD 56
             TL   +   Q   K ++L Q ML            +     + YR R    +   + D
Sbjct: 92  GCTLQHLEESAQRNWKQNQLHQTMLRLGGIDHPQAPALTDQRGLGYRNRGLIPLRRGEDD 151

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLF 105
            L    F + +   + +         ++AL+  +   +    L           LR    
Sbjct: 152 RLRMGYFRRGSHRIVNLSRCPVLDPRLDALVEPLKQDLDTSGLSADHDLSHSQGLRHLGL 211

Query: 106 QIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           +I + T +    +V+   L   + L   W E    ++      + +         T +  
Sbjct: 212 RIGHHTGEVLITVVSSQQLPALQRLAQQWIERWDPVKGVTLNLQPRRTNQILGATTTVLA 271

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA--TKGIQGDLLELYCGN 220
               + E        L  +    +F Q N      ++  +++      + G +++ YCG 
Sbjct: 272 GAPTIRELFC----GLQLQLSTTTFFQINTPQAERIVACIVSWLSQAELAGPIVDAYCGI 327

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREF 279
           G  SL LA     V+ +EI   S++ AR N  AN +    +          +        
Sbjct: 328 GTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLGARTEFQAGDVANLLKETLA---- 383

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-- 335
                          + VDPPR GL+ + +  + + P   + Y+SC+  +  RDL  L  
Sbjct: 384 -----------TCSALVVDPPRRGLESSVIEAILSDPPGLLAYLSCDMATQARDLKRLLQ 432

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
               + +E+L   D FP T H+E    L R  S
Sbjct: 433 PEGPYRLEQLQPVDFFPQTTHLENLAFLRRVSS 465


>gi|309701137|emb|CBJ00435.1| 23S rRNA (uracil-5-)-methyltransferase [Escherichia coli ETEC
           H10407]
 gi|323937966|gb|EGB34228.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           E1520]
          Length = 375

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 138/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVVEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L     IE
Sbjct: 297 ---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|289628369|ref|ZP_06461323.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
          Length = 347

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 82/364 (22%), Positives = 142/364 (39%), Gaps = 30/364 (8%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLY--HIM 62
            +E+QLA K   L + +L                  + YR RA   +  D          
Sbjct: 2   PHEEQLALKQRMLAEQLLRVANAVPDEWAAPLSGAELAYRRRARVAVRWDAKAKRLDVGF 61

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
               +++ + I++       +  +M E+   ++     +A L  ++  +      + T +
Sbjct: 62  RAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQA-LGHVELFSG-----VATAV 115

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
             R            L+        Q+ L G           D +  RL      L +R 
Sbjct: 116 LLRHTAPLAEADLALLQAFCSKHGAQLWLHGDGEPQPASPG-DTLGYRLEPWNLQLAWR- 173

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
               F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V+AVE   
Sbjct: 174 -PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAKEVVAVEGVA 232

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             VE A  N  +N ++NV+  +    +             L   D  +  F  + +DPPR
Sbjct: 233 TMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSAVLLDPPR 280

Query: 302 SGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECG 359
            G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D FP T H+E  
Sbjct: 281 DGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQTAHVEAM 340

Query: 360 VLLV 363
            L  
Sbjct: 341 ALFE 344


>gi|331682368|ref|ZP_08382987.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H299]
 gi|331079999|gb|EGI51178.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H299]
          Length = 375

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPLLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMVKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|34497387|ref|NP_901602.1| 23S rRNA (uracil-5-)-methyltransferase [Chromobacterium violaceum
           ATCC 12472]
 gi|50401501|sp|Q7NWP9|RUMA_CHRVO RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|34103243|gb|AAQ59606.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 514

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 138/379 (36%), Gaps = 31/379 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++   ++  Q+A K   L   +        +           HYR RA          
Sbjct: 78  GCSMQHVEFTAQVAIKQRVLEDNLKRIGKVKAERVLTPIAGPAWHYRHRARLSARMVAKK 137

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++ +     +         I+ L++ +   I     +  ++ Q++       
Sbjct: 138 GGVLVGFHEKSSSYIAEMRECHILPKHISDLIMPLREMIATL-SISQRMPQVEVAVGDKL 196

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-----LDRDYVDER 170
             +V       + DA         D   A +  +Q+  +      C     LD   +   
Sbjct: 197 DILV-FRNMDDITDADFAILKAFSDKHGAAERPLQIWLQPKGPDTCYPIYPLDAPKLTYS 255

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           +      + Y   E  FTQ N  IN  M+   L       G+ + +++CG GNF+L +AR
Sbjct: 256 MPEFAVEMPYYPTE--FTQVNPQINAVMVARALKFLDPQPGERIADMFCGIGNFTLPIAR 313

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V  +E ++P V  A  N   N + +     M+             F+  ++     
Sbjct: 314 SGAVVHGMEGSQPLVRRAVENATHNGLQDKVSYEMA-----------NLFDVTEESFAAL 362

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL--STTHTIERLA 345
            +F  + VDPPR G       + +  A   I+Y+SCNP +L RD  +L  +  +T++   
Sbjct: 363 GKFDKMLVDPPRDGAVQLLKAITEETAPQRIVYVSCNPSTLARDAGVLVHTKGYTLKAAG 422

Query: 346 LFDQFPYTRHMECGVLLVR 364
           + + FP+T H+E      +
Sbjct: 423 IINMFPHTAHVESVAWFEK 441


>gi|294787982|ref|ZP_06753226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Simonsiella muelleri
           ATCC 29453]
 gi|294484275|gb|EFG31958.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Simonsiella muelleri
           ATCC 29453]
          Length = 435

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 147/374 (39%), Gaps = 28/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
              L   ++  Q+A K     + +        +            YR R    I+ D  D
Sbjct: 73  GCVLQHAEFTAQVAYKQRVFEEQLQRIGKVFPEQILPPIYGAEWGYRSRTRLGIFIDKQD 132

Query: 58  LYHIMF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--RAKLFQIDYLTSQS 114
           + HI +  ++++  + I         I+  +  + A ++    +  + +L  ++    + 
Sbjct: 133 VVHIGYQAKRSRRIVSISQCPVLPDHISGSLKTIRANLQQLHQIAPKIQLKGVEISVGEQ 192

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY--VDERLT 172
             A+  +   +L ++        L++ +    +QI         ++   ++   ++  L 
Sbjct: 193 ITALNIISNKKLPENQLASFLGSLKE-ISGINWQIWQQFGNFPAQVVSPKNAPELNYTLP 251

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHF 231
                + +R     FTQ N  +N  M+   +   +      +++L+CG GNF+L +AR  
Sbjct: 252 EFQLNMPFRV--GDFTQINLPMNEAMVSRAMRLLQPQAYEKIVDLFCGLGNFTLPIARSG 309

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             VL VE A    E A  N   N ++NV+    +  + T+       +            
Sbjct: 310 AMVLGVEGADFLTERAANNARENGLHNVQFRTANLFDVTEQFIESLGY------------ 357

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
           F  + +DPPR+G       + + Y    I+Y+SCNP +  RD ++L    +    + + +
Sbjct: 358 FDKMLLDPPRAGAYAVVQALQRPYLPKRIVYVSCNPATFARDAAVLVDKGYRFRAVGVMN 417

Query: 349 QFPYTRHMECGVLL 362
            FP+T H+E   + 
Sbjct: 418 LFPHTAHVEAISVF 431


>gi|187730916|ref|YP_001880944.1| 23S rRNA methyluridine methyltransferase [Shigella boydii CDC
           3083-94]
 gi|226725415|sp|B2TUM0|RUMB_SHIB3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|187427908|gb|ACD07182.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella boydii CDC
           3083-94]
          Length = 375

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 138/373 (36%), Gaps = 39/373 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
            +QL+ K   L+ ++  F V             +R +A+  +    +     M  +    
Sbjct: 22  PEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTP 81

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQSDQAIVTLIY 123
           ++      +      + A +   +A   L P      R +L  I    SQSD  ++    
Sbjct: 82  EDLCDCPLYPASFAPVFAALKPFIACAGLTPYNVARKRGELKYILLTESQSDGGMMLRFV 141

Query: 124 HR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA 174
            R       L  A      +L   L      IQ +  A    +T+I L      + L   
Sbjct: 142 LRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE---QQALAER 197

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
              +       SF Q N  +   +   V    + +    + +L+CG G F L  A    +
Sbjct: 198 FNDVPLWIRPQSFFQTNPAVASQLYATVRDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ 257

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +  +EIA  ++  A+ + A   +  ++   + S +F  A    +E               
Sbjct: 258 LTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATAQGEVQEL-------------- 303

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+       +    P  I+Y SCN  ++ +D+  L     IER+ LFD FP
Sbjct: 304 -VLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQLFDMFP 361

Query: 352 YTRHMECGVLLVR 364
           +T H E   LLV+
Sbjct: 362 HTAHYEVLTLLVK 374


>gi|21242082|ref|NP_641664.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|21107489|gb|AAM36200.1| RNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 451

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 140/374 (37%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 95  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKK 154

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  + A I      +  + QI+++    D
Sbjct: 155 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPLLAALIEGMD-GKRDIPQIEFIAG-DD 212

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L +  R+  I      H     +Q  G  +   +      +  RL    
Sbjct: 213 AVALTIRHMQPLSERDRQAWITFAQE-HGFAIFLQPGGVDSVQPLWPQEVPLSFRLPQWD 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   +A  +    D +L+L+CG GNF+L LAR    V
Sbjct: 272 VELAFR--PLDFIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 330 VGVEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDK 377

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 378 LLLDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 437

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 438 HTAHVESIAVFERR 451


>gi|255020470|ref|ZP_05292535.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970080|gb|EET27577.1| 23S rRNA (uracil-5-) -methyltransferase rumA [Acidithiobacillus
           caldus ATCC 51756]
          Length = 440

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 141/373 (37%), Gaps = 27/373 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHDGDD 57
             +L   +   Q+A K   L   +               +   +HYR +A   +      
Sbjct: 85  GCSLQHLEPGAQIAVKQRHLEDQLQHIGRVRPARILPPIQGPSLHYRSKARLSVRVPKTR 144

Query: 58  LYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
              + F +  +     ++        +   ++++ A +       A + Q +   + +  
Sbjct: 145 GALVGFREYHSSFVAAMESCPVLDPRVGERILDLRALVARLQ-RPAAIPQWEIACTDAHA 203

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-KICLDRDYVDERLTVAG 175
            ++     R LD   R     L+    A   +I L G   ++ +     D  +    +  
Sbjct: 204 VLIL----RHLDALSRSDLRLLQGFADAHGLRILLQGGGPESLQALPGEDVPELEYALPE 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L  R     F Q N  IN  ++   +A      G+ +++L+CG GNF+L +AR   R 
Sbjct: 260 FDLRLRFQPLGFIQVNPWINPVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARA 319

Query: 235 LAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           L VE     V  AR+N   N +      +     +             L D+   +   +
Sbjct: 320 LGVEGDTRLVAQARFNAELNGLAARAHFIAADLTQTA-----------LADLPGAAGV-R 367

Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
            + +DPPRSG  +   G+  A   ++Y+SCNPD+L RD + L       +E   + + FP
Sbjct: 368 KMLIDPPRSGAIEILKGIGPALRRLVYVSCNPDTLARDSAYLVQQQGFRLEAAGIVNMFP 427

Query: 352 YTRHMECGVLLVR 364
           +T H+E   L  R
Sbjct: 428 HTAHVESVALFTR 440


>gi|167855793|ref|ZP_02478546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus parasuis
           29755]
 gi|167853072|gb|EDS24333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus parasuis
           29755]
          Length = 446

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 145/359 (40%), Gaps = 28/359 (7%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Q   K   L   +   Q   +    +   + I+YR RA+  +    + L        T+E
Sbjct: 103 QRETKQQTLFNRLQKLQAEPIRFEPMLIGQGINYRRRAKLSMVVQKNTLVVGFRQANTRE 162

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            + +++       +N L+ ++   +      + +L  I+ + + +  A++     R + +
Sbjct: 163 IIPLNHCDILEPELNTLLPKLQQ-LFASWKNKKQLGHIELVQADNGVALLL----RHIGE 217

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
              + + +L+  +      + ++   +K +I   R    E        L        F Q
Sbjct: 218 LHSQDSDKLQRFVEQEDLLLFVMT--DKDQISQWRG---EVPYYQINGLTLHFSIRDFIQ 272

Query: 190 PNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            N  +N  M+   +        D +L+L+CG GNF+L +A   + V+ +E  +P V  A+
Sbjct: 273 INREMNKQMVNKAIVWLDLQSTDRVLDLFCGMGNFTLPIAPFVEEVVGIEGVEPMVAQAK 332

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   N +NN K  +    +               D       F    +DP R+G   A 
Sbjct: 333 QNAQTNQINNAKFYQTDLDK------------PFVDQPWAKAYFNKALLDPARNGAYFAL 380

Query: 309 VGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + +  P  I+Y+SCNP +L RD   L +  + + + A+ D FP+T H+E   L  R+
Sbjct: 381 DHLCELQPERIVYVSCNPATLVRDAEKLIAKGYRLSQSAMIDMFPHTAHLESISLFERR 439


>gi|157369893|ref|YP_001477882.1| 23S rRNA methyluridine methyltransferase [Serratia proteamaculans
           568]
 gi|167012643|sp|A8GCB4|RUMB_SERP5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|157321657|gb|ABV40754.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Serratia
           proteamaculans 568]
          Length = 375

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 137/383 (35%), Gaps = 41/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL +K   L+ ++    V   L+    E   +R +A+  +    +    
Sbjct: 13  SCQWLEKPYPQQLTDKQHHLQSLLSDRDVAQWLEPIAGEQSAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRIDYFM--PGSLL---------INALMIEMMATIRLEPLLRAKLFQIDY 109
            M  +     + +      P S           I    +      R    L+  L     
Sbjct: 73  GMLHRDG-TAVDLSACPLYPASFSPMFDVLKSFIARAGLTPYNVARKRGELKYLLLTEST 131

Query: 110 LTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDR 164
            +       V    ++L  L  A      +L   L      IQ +  A    + +I L  
Sbjct: 132 HSGGVMLRFVLRSDNKLAQLRAALPWLQQQLPQ-LRVISANIQPVHMAIMEGEREIPLTE 190

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
               E        +       SF Q N  +   +        + +  D + +L+CG G F
Sbjct: 191 QQALEE---QFNQVPLYIRPQSFFQTNPQVAAELYATARDWVRALAIDSMWDLFCGVGGF 247

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A    R+  +EI+  ++  AR +     + +V    + S  F  A           
Sbjct: 248 GLHCALPETRLTGIEISAEAIACARQSAKTLGLQHVDFQALDSTRFATA----------- 296

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341
                    + + V+PPR G+  A    +   A  +ILY SCN +S+ +D+ +L   + I
Sbjct: 297 ----EGSVPQLVLVNPPRRGIGKALCDYLNQMAPGYILYSSCNAESMAKDIEMLPD-YRI 351

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           ER+ LFD FP+T H E   LLVR
Sbjct: 352 ERVQLFDMFPHTAHYEVLTLLVR 374


>gi|331656932|ref|ZP_08357894.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA206]
 gi|331055180|gb|EGI27189.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA206]
          Length = 375

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTVDLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCYCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|16128827|ref|NP_415380.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89107710|ref|AP_001490.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12
           substr. W3110]
 gi|170080518|ref|YP_001729838.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|238900118|ref|YP_002925914.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli BW2952]
 gi|256023514|ref|ZP_05437379.1| 23S rRNA methyluridine methyltransferase [Escherichia sp. 4_1_40B]
 gi|301027629|ref|ZP_07190949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           196-1]
 gi|307137487|ref|ZP_07496843.1| 23S rRNA methyluridine methyltransferase [Escherichia coli H736]
 gi|331641380|ref|ZP_08342515.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H736]
 gi|2501407|sp|P75817|RUMB_ECOLI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725405|sp|B1X800|RUMB_ECODH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|259495632|sp|C4ZY31|RUMB_ECOBW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|1787083|gb|AAC73946.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12
           substr. MG1655]
 gi|4062444|dbj|BAA35573.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K12
           substr. W3110]
 gi|169888353|gb|ACB02060.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli str. K-12
           substr. DH10B]
 gi|238859754|gb|ACR61752.1| 23S rRNA m(5)U747 methyltransferase [Escherichia coli BW2952]
 gi|260449994|gb|ACX40416.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli DH1]
 gi|299879231|gb|EFI87442.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           196-1]
 gi|315135508|dbj|BAJ42667.1| 23S rRNA methyluridine methyltransferase [Escherichia coli DH1]
 gi|323942776|gb|EGB38941.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli E482]
 gi|323969577|gb|EGB64865.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli
           TA007]
 gi|331038178|gb|EGI10398.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli H736]
          Length = 375

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   ++    +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWIMQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L     IE
Sbjct: 297 ---QGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LLV+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVK 374


>gi|330974367|gb|EGH74433.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 451

 Score =  205 bits (522), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 139/371 (37%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++        L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKSFSK-PQVLGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 215 --VATAVLLRHTASLAEADLALLQAFCSRHDAQLWLHGEGEPQPARSG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLARDV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQ------------PLTQADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD   L    + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|169825121|ref|YP_001692732.1| RNA methyltransferase [Finegoldia magna ATCC 29328]
 gi|167831926|dbj|BAG08842.1| RNA methyltransferase [Finegoldia magna ATCC 29328]
          Length = 403

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 148/370 (40%), Gaps = 47/370 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
             ++    YE++L  K + +    Q +    + ++ I  +   +YR + +  +    ++ 
Sbjct: 73  GCSMQDITYEKELEIKKNSVLNKLQRIAKLDIKDVDILTNAEYYYRNKVDLKV----ENG 128

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
               ++++T    +I      S  IN    EM+  +    L    + +I   ++ +D+  
Sbjct: 129 KIGYYNRKTHNLTQISTCKIASTAIN----EMINWLVNHDL--NGVSEIKIRSNYNDEIQ 182

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           ++L Y           + +L + L      +++  +        D  Y  ++       L
Sbjct: 183 ISLDY----------ISDQLLENLKTVDSIVEIYEKNKN----FDLIYKKKQFVDKIGDL 228

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
            +     SF Q N      + +           D +L+LYCG G  ++ +       + V
Sbjct: 229 SFIISPKSFFQVNKYNTSLLYDTAKQMMNAEANDRILDLYCGIGTTTMYIGN--GNTIGV 286

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+ K +V+ A  N   N++ +++ +   S+     + +E               F  I V
Sbjct: 287 EVVKDAVKDANENKKLNNLESIQFIEEKSENVVGKLTQE--------------HFDVILV 332

Query: 298 DPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354
           DPPR G+D+  V  +       ++YISC+P +L RDL  L+     +E + L D F  T 
Sbjct: 333 DPPRKGMDEKVVDAIIKSTAKKLVYISCDPATLARDLKALTENGFGVEDVKLVDMFAKTM 392

Query: 355 HMECGVLLVR 364
           H+E   L+ +
Sbjct: 393 HVETVALIQK 402


>gi|322833209|ref|YP_004213236.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rahnella sp. Y9602]
 gi|321168410|gb|ADW74109.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Rahnella sp. Y9602]
          Length = 376

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 139/384 (36%), Gaps = 40/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K   L  ++    V    +        +R +A+  +    +    
Sbjct: 13  SCQWLDKPYLQQLADKQRDLSDLLSDLPVAEWCEPVTGPESAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +     +      +      + +++   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLHRDGTPVDLCECPLYPASFPAVFSVLKIFIARAGLTPYNVARKRGELKFLLLTESQK 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A     T+I L   
Sbjct: 133 DGGMMLRFVLRSDAKLAQLRAALPWLQQQLPQ-LKVISANIQPVHMAILEGDTEIPLTD- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNF 223
              +RL      +       SF Q N  +   +        +G      + +L+CG G F
Sbjct: 191 --VQRLEEDFNHVPLFIRPQSFFQTNPVVAEKLYATARDWVRGRGDIRSMWDLFCGVGGF 248

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A    ++  +EI+  ++  A+ +     + NV+   + S  F              
Sbjct: 249 GLHCATPQMKLTGIEISAEAIACAKESAVRLGLQNVEFQALDSTGFATG----------- 297

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                      + V+PPR G+  A    +   A   ILY SCN  ++ +DL++L   + I
Sbjct: 298 ----KGEVPDLVLVNPPRRGIGKALCEYLSHMAPDTILYSSCNAQTMAQDLALLPD-YHI 352

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
            R+ LFD FP+T H E   LLVR+
Sbjct: 353 LRVQLFDMFPHTAHYEVMALLVRR 376


>gi|56475832|ref|YP_157421.1| 23S rRNA 5-methyluridine methyltransferase [Aromatoleum aromaticum
           EbN1]
 gi|81358490|sp|Q5P841|RUMA_AROAE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|56311875|emb|CAI06520.1| 23S rRNA (Uracil-5-)-methyltransferase [Aromatoleum aromaticum
           EbN1]
          Length = 433

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 130/367 (35%), Gaps = 32/367 (8%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q A K   L   +         I           YR RA   +        +     ++
Sbjct: 84  AQAAAKQRVLEDALWHVGKVRPDIIYAAIHGPSWGYRYRARIGVRVVPKKGGVLIGFHER 143

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     +         ++ ++  +   +     +  +L QI+     +   +V     R
Sbjct: 144 RSSYIADMRSCPILPPHVSGMLPALHELVGGL-SIADRLPQIEIAIGDTAIVLV----FR 198

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLTVAGRTLIYRQ 182
            L         RL         Q+ L   A  T   L       +   L      + ++ 
Sbjct: 199 NLLPLTPADEARLAAFAGEHGVQVWLQPGAPATAHPLHPKGAAPLAYTLPEFDVAMAFQ- 257

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
               FTQ N  IN  ++   L       G+ + +L+CG GNFSL +AR    V+ VE ++
Sbjct: 258 -PTDFTQVNIDINRLLIRRSLQLLDPRPGERIADLFCGLGNFSLPIARCGATVVGVEGSE 316

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             V  A  N   N ++          EF  A   E   + L  +     R   + +DPPR
Sbjct: 317 SLVRRAAKNARRNGLHGRS-------EFHAANLFEATEDSLAALG----RLDKLLIDPPR 365

Query: 302 SGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHME 357
            G       +  +Q+   I+Y+SCNP +L RD ++L     + +    + + FP T H+E
Sbjct: 366 EGAIAVVKALSTLQSPARIVYVSCNPATLARDAAVLVHEKGYVLRGAGIANMFPQTSHVE 425

Query: 358 CGVLLVR 364
              L  R
Sbjct: 426 SIALFER 432


>gi|289670316|ref|ZP_06491391.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 444

 Score =  205 bits (522), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 139/374 (37%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 88  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  ++A +      +  + QI+++    D
Sbjct: 148 DKTLIGFRELDPRFVADLSVCYTVIPQIGEKIP-LLAALVEGMDGKRDIPQIEFIAG-DD 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L +  ++  I      H     +Q  G  +   +      +  RL    
Sbjct: 206 AVALTIRHMQPLSERDQQAWIAFAQE-HGFAISLQPGGVDSVHPLWPQEVPLSFRLPQWD 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V
Sbjct: 265 VELAFR--PLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N + N +     + + TQ  R      +          F  
Sbjct: 323 VGVEGDAGLVARAKDNAQRNGLENAQFY---AADLTQDQRNTPWMRQ---------GFDK 370

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 371 LLLDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 430

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 431 HTAHVESIAVFERR 444


>gi|66046925|ref|YP_236766.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. syringae B728a]
 gi|75501105|sp|Q4ZQ44|RUMA_PSEU2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|63257632|gb|AAY38728.1| tRNA (uracil-5-)-methyltransferase/TrmA [Pseudomonas syringae pv.
           syringae B728a]
          Length = 451

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 139/371 (37%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++        L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKSFSK-PQVLGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 215 --VATAVLLRHTASLVEADLALLQAFCSRHGAQLWLHGEGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNASVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLARDV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE     VE A  N  +N ++NV+  +    +             L   D  +  F  
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQ------------PLTQADWAAEGFSA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +    + +     +LY+SCNP +L RD   L    + ++R  + D FP 
Sbjct: 378 VLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQ 437

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 438 TAHVEAMALFE 448


>gi|117926892|ref|YP_867509.1| RNA methyltransferase [Magnetococcus sp. MC-1]
 gi|117610648|gb|ABK46103.1| 23S rRNA m(5)U-1939 methyltransferase [Magnetococcus sp. MC-1]
          Length = 424

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 84/358 (23%), Positives = 141/358 (39%), Gaps = 29/358 (8%)

Query: 15  AEKVDRLRQMML---AFQVPNLQIFRS--EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
             K   +++ +     F+ P +Q  +S      YR R    I+   D      +   +K 
Sbjct: 86  TFKAAVVKEALQHIGKFENPPMQPLQSAQPETGYRRRCGLKIYWVRDHAVVGFYQTASKR 145

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            + +         ++AL I  + T+  E  +R +L Q+D         ++      LL  
Sbjct: 146 IVDLPNCPILHPKLDAL-IHPIRTLVSELSVRERLPQVDLSCGDEGVGMILH----LLRK 200

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
              +    L    H  K     I    K  +         R +  G++   + +   FTQ
Sbjct: 201 LSAKDKEILTTFAHTHKIDQLWIQSGRKEDLTPFISQEPLRYSPDGKS-QLKFMPGDFTQ 259

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            +   N  ++E VLA   G    +L+L+ G GNF+L LAR F RV   E  +P+V+  R 
Sbjct: 260 AHFEQNRQLVEQVLA-WIGQGQRVLDLFSGLGNFTLPLARQFTRVTGYESYEPAVKRGRS 318

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   +   +V    M              F+      +   +   + VDPPR G  +   
Sbjct: 319 NTTLH--PSVTFKTMD------------LFSETALKTLPLNQVDAMVVDPPRDGAVNLAK 364

Query: 310 GMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  A     I+++SC+P +  RD +IL    +T+E++   D FP T H+E   L  R
Sbjct: 365 QIKDAGGPATIVWVSCDPATFARDAAILCAGGYTMEQVKPLDMFPMTSHVEVVALFKR 422


>gi|213156040|ref|YP_002318085.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii AB0057]
 gi|226725373|sp|B7I675|RUMA_ACIB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|213055200|gb|ACJ40102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii AB0057]
          Length = 462

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 155/377 (41%), Gaps = 32/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWH--DG 55
             ++     ++Q+  K + L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQIHLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQ 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D L     +  +     I         ++  + E+   ++    L+ K        ++ D
Sbjct: 158 DRLILGFREHHSNRLTSIHTCSVLDKKLSDNLPELRNLLQ---SLKGKAHIGHVELAKGD 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--V 173
             I  L+ H  ++        +LR     + +Q+ L    +++   +D +    RL   +
Sbjct: 215 HEISLLVRH--IEKLNNADVNQLRQFALHKGWQLYLQ-PKDQSLRRIDEEQGAMRLHYAL 271

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + +      FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR   
Sbjct: 272 NAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVG 331

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ VE ++  V+ A  N   N++         S++ T+        N+        
Sbjct: 332 AKGQVVGVEASEEMVQRATDNAKRNNLVQASFF---SQDLTKDFSHHSWANQ-------- 380

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ 
Sbjct: 381 -GFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVM 439

Query: 348 DQFPYTRHMECGVLLVR 364
           D F +T H+E   L  +
Sbjct: 440 DMFTHTEHVESIALFEK 456


>gi|300947051|ref|ZP_07161272.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           116-1]
 gi|301646296|ref|ZP_07246187.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           146-1]
 gi|300453290|gb|EFK16910.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           116-1]
 gi|301075499|gb|EFK90305.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           146-1]
 gi|315619866|gb|EFV00385.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli 3431]
          Length = 358

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 136/373 (36%), Gaps = 39/373 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
            +QL+ K   L+ ++  F V             +R +A+  +    +     M  +    
Sbjct: 5   PEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTP 64

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQSDQAIVTLIY 123
           ++      +      + A +   +A   L P      R +L  I    SQSD  ++    
Sbjct: 65  EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFV 124

Query: 124 HR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA 174
            R       L  A      +L   L      IQ +  A    +T+I L      + L   
Sbjct: 125 LRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE---QQALAER 180

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
              +       SF Q N  +   +        + +    + +L+CG G F L  A    +
Sbjct: 181 FNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ 240

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +  +EIA  ++  A+ + A   +  ++   + S +F  A                    +
Sbjct: 241 LTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA---------------QGDVPE 285

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+       +    P  I+Y SCN  ++ +D+  L     IER+ LFD FP
Sbjct: 286 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQLFDMFP 344

Query: 352 YTRHMECGVLLVR 364
           +T H E   LLV+
Sbjct: 345 HTAHYEVLTLLVK 357


>gi|261339168|ref|ZP_05967026.1| hypothetical protein ENTCAN_05391 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319012|gb|EFC57950.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacter
           cancerogenus ATCC 35316]
          Length = 375

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 139/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     QQLA K+  L+Q++    V             +R +A+  +    +    
Sbjct: 13  SCQWIEQPVSQQLAAKMADLQQLLADHAVGEWCAPVSGPEQGFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++ +    +      + A +   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLHRDGTPEDLIDCPLYPESFKPVFAALKPFIARAGLTPYNVARKRGELKYLLLTESQR 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    + +I L   
Sbjct: 133 DGGMMLRFVLRSESRLEQLRAALPWLQQQLPQ-LKVITVNIQPVHMAIMEGEKEIFLTGQ 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
           +    L      +       SF Q N  +   +        + +  G + +L+CG G F 
Sbjct: 192 HA---LAETFNGVPLWIRPQSFFQTNPTVASALYATARDWVRALNIGHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EI+  ++  A  + A   + N+    + S +F               
Sbjct: 249 LHCATPEMQLTGIEISAEAIACATQSAAELGLTNLHFQALDSTQFATG------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +   A  +I+Y SCN  ++ +D++ L   + IE
Sbjct: 297 ---QGNVPELVLVNPPRRGIGKPLCDYLSQMAPAYIVYSSCNARTMAKDIAHL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LL +
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLAK 374


>gi|169634355|ref|YP_001708091.1| 23S rRNA 5-methyluridine methyltransferase [Acinetobacter baumannii
           SDF]
 gi|226725375|sp|B0VKL3|RUMA_ACIBS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|169153147|emb|CAP02232.1| 23S rRNA (Uracil-5-)-methyltransferase(23S
           rRNA(M-5-U1939)-methyltransferase) [Acinetobacter
           baumannii]
          Length = 463

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 157/378 (41%), Gaps = 33/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWH--DG 55
             ++     ++Q+  K + L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQIRLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQ 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D L     +  +     I         ++  + E+   ++    L+ K+       ++ D
Sbjct: 158 DRLILGFREHHSNRLTSIHTCSVLDKKLSDSLPELRNLLQ---SLKGKVHIGHVELAKGD 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--V 173
                L+ H  ++        +LR     + +Q+ L  +  ++   +D +    RL   +
Sbjct: 215 HETSLLVRH--IEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYAL 272

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + +      FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR   
Sbjct: 273 NAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVG 332

Query: 233 R---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               ++ VE ++  V+ A  N+  N++         S++ T+        N+        
Sbjct: 333 AKGVIVGVEASEEMVQRATDNVKRNNLVQASFF---SQDLTKDFSHHSWANQ-------- 381

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLAL 346
             F  + +DPPR+G  +  +  V  +    I+Y+SCNP +L RD  +L    + +++ A+
Sbjct: 382 -GFDALLIDPPRAGAYE-IIQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAV 439

Query: 347 FDQFPYTRHMECGVLLVR 364
            D F +T H+E   L  +
Sbjct: 440 MDMFTHTEHVESIALFEK 457


>gi|170056918|ref|XP_001864248.1| 23S rRNA methyltransferase [Culex quinquefasciatus]
 gi|167876535|gb|EDS39918.1| 23S rRNA methyltransferase [Culex quinquefasciatus]
          Length = 619

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 146/422 (34%), Gaps = 80/422 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPI--H 42
            YE QL +K   +  ++  F                            L+  R  P    
Sbjct: 165 SYEDQLKQKQSEMHNVLKGFGDEVWKSCPTLRSFIEQKRKEHDGLPCKLEDIRGSPQVDG 224

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQT-----------KERMRIDYFMPGSLLINALMIEMM 91
           YR + EF I  DG     + F   +            +   I   M  ++ +    ++  
Sbjct: 225 YRNKCEFSIGKDGQGEVRVGFRVGSYSNGFLEVESPDQLKHISEKMKSTVKLFEEFVQKS 284

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL-------HA 144
                 P      F+   + + +    V ++      +  +E    LR +L        A
Sbjct: 285 EYEVYSPETYKGYFRQLTVRTSNATGQVMVVIGIHPQELGKEKLSELRSSLVSWFTSEKA 344

Query: 145 RKYQIQLI-----------GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
           ++  I  I             A+ T       ++ E +      L +R    +F Q N  
Sbjct: 345 KEIGISSIYFQTIEKFKSGQNAHPTTHLWGETHIIEEIH----GLKFRVSPQAFFQINTP 400

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
               + +  +  A    Q  +L++ CG G   L  A+H  +VL VEI   ++  A +N  
Sbjct: 401 SAEILYQTAIDLAGTTKQTSILDICCGTGTIGLCFAKHCKQVLGVEIVAEAIADATHNAK 460

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N + N K    ++ +   ++   R  N  KD D+         VDPPR+GL   ++  +
Sbjct: 461 ENGIENCKFYTGNADDLITSL--VRNANVQKDEDL------VAIVDPPRAGLHIRSITQL 512

Query: 313 QAYP---HILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGV 360
           +       ++Y+SC+P S  ++ + L               +R    D FP+T H E  V
Sbjct: 513 RNARGLNRLIYVSCSPQSAVKNWADLMRPRSKVMRGGPFMPKRAIPVDLFPHTPHAELIV 572

Query: 361 LL 362
           L 
Sbjct: 573 LF 574


>gi|283457325|ref|YP_003361899.1| SAM-dependent methyltransferase [Rothia mucilaginosa DY-18]
 gi|283133314|dbj|BAI64079.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Rothia mucilaginosa
           DY-18]
          Length = 409

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 138/380 (36%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +   Y  Q+  K +  R ++  + Q+  L    S    +R +A+  +     +   
Sbjct: 45  SCPRIETAYTAQVQAKQEHARALLANYPQLQWLDPVTSAEAGFRNKAKLVVGGSAKNPTL 104

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYLTSQ 113
            + D +T     +         I A +  +   I+         P  R +L  I    S 
Sbjct: 105 GIVDYRTGASTDLGECPLYMEPIQAAIPVLRELIQRADLTPYDIPNRRGELKNILVTASA 164

Query: 114 SDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DE 169
           + + +V  +   + L    R     L++ L         + R    ++  D + +    +
Sbjct: 165 AGELMVRFVLRSKKLLVPIRRQMGWLQERLPNLAVLSVNLLREPVARVEGDEEIILSERQ 224

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            L +    L       SF Q N  +   M        + +    L +LYCG G F+L  A
Sbjct: 225 TLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPRSLWDLYCGVGGFALHAA 284

Query: 229 R--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
                  V  +EI+  +V +A+  +A   +  V      + EF  +              
Sbjct: 285 SVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVDFSAQDAPEFAVS-------------- 330

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERL 344
                 + + V+PPR G+ ++    ++      ++Y SCN  +L +DL  + + +   + 
Sbjct: 331 -SGTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKDLERMPS-YAPVQG 388

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H E   LL R
Sbjct: 389 RVLDMFPHTDHYEVMTLLKR 408


>gi|307130763|ref|YP_003882779.1| 23S rRNA m(5)U747 methyltransferase [Dickeya dadantii 3937]
 gi|306528292|gb|ADM98222.1| 23S rRNA m(5)U747 methyltransferase [Dickeya dadantii 3937]
          Length = 376

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 134/383 (34%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQ+ +K   L  ++ A  V   L    S    +R +A+  +    +    
Sbjct: 13  SCQWLETAYPQQVTDKQQHLLGLLAAHPVQRWLAPVTSAEAAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        D           F      I    +      R    L+  L     L
Sbjct: 73  GMLHRDGSAVDLCDCPLYPDSFAPVFSVLKAFIARAGLTPYNVARRRGELKYLLLTQSTL 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           + +    +V     +L  L  A      +L   L      IQ + +A    + +I L   
Sbjct: 133 SGRFMLRVVLRSETKLAQLRAALPWLQQQLPQ-LTVISANIQPVHQAILEGEQEIPLTEA 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              E        +       SF Q N  +   + +        +    L +L+CG G F 
Sbjct: 192 QALEE---RFNQVPLYIRPQSFFQTNPQVAAALYDTARQWVSTLPVRSLWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     +  +EI+  ++  AR + A   + NV    + S  F               
Sbjct: 249 LHCASSDTPLTGIEISPEAIACARRSAAQLGLTNVSFAALDSTRFAVG------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +     + V+PPR G+       +   A P++LY SCN +S+ RD++ L   + I+
Sbjct: 297 ---EAQTPDLVIVNPPRRGIGAELCDYLSRMAPPYLLYSSCNAESMARDIARLPA-YQIQ 352

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           +  LFD FP+T H E   LL R+
Sbjct: 353 QAQLFDMFPHTAHYEVLALLQRR 375


>gi|219849086|ref|YP_002463519.1| RNA methyltransferase, TrmA family [Chloroflexus aggregans DSM
           9485]
 gi|219543345|gb|ACL25083.1| RNA methyltransferase, TrmA family [Chloroflexus aggregans DSM
           9485]
          Length = 414

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/366 (24%), Positives = 152/366 (41%), Gaps = 46/366 (12%)

Query: 10  YEQQLAEK----VDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  Q+  K    V+++R+ +   +VP    I   +P  YR  A  H  H           
Sbjct: 82  YPAQVRLKGEIVVEQIRKFLPGVEVPIRPVIAAPQPWGYRNSARLHADHTA----LGYHA 137

Query: 65  QQTKERMRIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTSQSDQAIV-TL 121
             TK  + +   +   LL+ AL   +  +  +    L+     +   +   +   ++ T+
Sbjct: 138 TGTKTVVDL---VDDPLLLPALREALAGLRRLPFAGLISEVTLRASAVYGYAAARLLPTV 194

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
             HR           RL  A  A    +  +  A++    +    + + L      +++ 
Sbjct: 195 TAHR-------NEIARLAAAWMATTPVLAGVTLADE--PLVGAGAIFDELG----EMVFH 241

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
              +SF Q N      MLE V  A     G LL+ Y G G+F+L LA  ++ V+AVE  +
Sbjct: 242 LSLSSFFQVNHPQAERMLEIVRTALAPHGGRLLDAYSGVGSFALPLAAGYEDVVAVEAHQ 301

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           P+V     +   N V+NV+ V  +++                 I   S  F  + +DPPR
Sbjct: 302 PAVADGEQSAFLNKVSNVRFVAGAAERV---------------IGHLSGPFHAVILDPPR 346

Query: 302 SGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
            G   A +  +++  P  I+Y+SC+P  + RDL+ L +  +   ++   D FP T H+E 
Sbjct: 347 RGCHPAVLTALIKHAPRCIVYVSCHPGLIGRDLAPLVAAGYHCIQVQPIDLFPQTPHIET 406

Query: 359 GVLLVR 364
            V+L R
Sbjct: 407 VVVLER 412


>gi|319941518|ref|ZP_08015845.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804992|gb|EFW01831.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Sutterella
           wadsworthensis 3_1_45B]
          Length = 491

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 136/376 (36%), Gaps = 26/376 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW--HDG 55
             T+   +   Q+A K   L   +        +      R    +YR RA   +      
Sbjct: 91  GCTMQHIEPNAQVAFKERILMDTLWHIGKVKPENVLPPIRGPFWNYRHRARLTVRDVAKK 150

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++ +     +      +  ++ ++  +   I +   +R ++ QI+       
Sbjct: 151 GGVLVGFHEKASSYVCDMHACPILTQNVSDMIDPLRELISVLD-MRQRMPQIEVAVGGDG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +   T +  R LD    E   +L     A    I L  +  +T   ++ +  +++L +  
Sbjct: 210 R---TALVFRHLDPVSPEDMEKLLAFGRAHGADIWLQPKGPETAHAVNPE-DEKKLGLEL 265

Query: 176 RTLIYRQI--ENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD 232
                R       FTQ N  +N  M+   +          + + +CG GNF+L LAR   
Sbjct: 266 TEFGVRIAFKPTDFTQVNHALNETMVGRAVRLLGLEPDHKVADFFCGLGNFTLPLARCSQ 325

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           RV+ +E ++  V  AR   A N +            F             +++       
Sbjct: 326 RVIGIEGSEGLVARARQGAAENGL-------AEKTTFRARNLFTWSEQDWEELWQTMGGI 378

Query: 293 KTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALF 347
             + +DPPR G       +    +    ++Y+SCNP +L RD +IL       I    + 
Sbjct: 379 DRVLIDPPREGALALARVLAATEKRPARVVYVSCNPATLARDCAILQHEGGWHIRAAGIM 438

Query: 348 DQFPYTRHMECGVLLV 363
           + FP+T H+E   +L 
Sbjct: 439 NMFPHTGHVESIAVLE 454


>gi|320161883|ref|YP_004175108.1| putative 23S rRNA (uracil-5-)-methyltransferase [Anaerolinea
           thermophila UNI-1]
 gi|319995737|dbj|BAJ64508.1| putative 23S rRNA (uracil-5-)-methyltransferase [Anaerolinea
           thermophila UNI-1]
          Length = 409

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 145/374 (38%), Gaps = 52/374 (13%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEP--IHYRMRAEFHIWHDG 55
            G       Y+ QL  K   L + +        P + +    P   +YR   +FH+  +G
Sbjct: 77  GGCHYQHMDYDLQLTVKQSILTEQLQRIGGLTDPPIGLMVPSPRAWNYRNTVQFHLTPEG 136

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              +    D       R    +    L    ++++   I+ EPL    L ++        
Sbjct: 137 QLGFRATDD-------RTVIGIQECHLPEEPLLDLWKQIQAEPL--PDLERLSLRLGADG 187

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL-DRDYVDERLTVA 174
           + ++ L           E       A+   +  + ++       + L   D+V   +   
Sbjct: 188 EILLVL-----------ESLEDTPPAISVEELPVSVVHSGPAGSLVLAGDDHVIMEVLGR 236

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
                +R    SF Q N  +   M++ VL+     + G +L++YCG G FS  LA     
Sbjct: 237 P----FRVSAGSFFQVNTPMAEAMVKHVLSLLPAERLGTVLDVYCGVGLFSAFLAPRTQN 292

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           ++ +E A  + +    N+  +  +NV +   ++++   +++                   
Sbjct: 293 LIGIESAPSACDDFAVNL--DEFDNVSLYMGTAEQILPSLQ---------------VYPD 335

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
            I VDPPR+GL+ A +  +     P ++YISC+P +L RD   L    + + ++  FD F
Sbjct: 336 LIVVDPPRAGLELAALDAILRMNAPTLIYISCDPATLARDTKRLIRGGYRLVQVTPFDLF 395

Query: 351 PYTRHMECGVLLVR 364
           P T H+E   L  R
Sbjct: 396 PQTYHIESISLFQR 409


>gi|294626959|ref|ZP_06705550.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598819|gb|EFF42965.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 491

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 139/374 (37%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 135 GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKK 194

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  + A I      +  + QI+++    D
Sbjct: 195 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPLLAALIEGMD-GKRDIPQIEFIAG-DD 252

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L +  R+  I      H     +Q  G  +   +      +  RL    
Sbjct: 253 AVALTIRHMQPLSERDRQSWITFAQE-HGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWD 311

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   +A       D +L+L+CG GNF+L LAR    V
Sbjct: 312 VELAFR--PLDFIQVNASLNQKMIAHAVALLDAKPDDRVLDLFCGLGNFTLPLARVVREV 369

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 370 VGVEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDK 417

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 418 LLLDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 477

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 478 HTAHVESIAVFERR 491


>gi|320353045|ref|YP_004194384.1| TrmA family RNA methyltransferase [Desulfobulbus propionicus DSM
           2032]
 gi|320121547|gb|ADW17093.1| RNA methyltransferase, TrmA family [Desulfobulbus propionicus DSM
           2032]
          Length = 432

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 138/376 (36%), Gaps = 33/376 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML------AFQVPNLQIFRSEPIHYRMRAEFHIWHDG 55
              L    Y  QLA K   L + +           P   +   +P  YR R   H+   G
Sbjct: 76  GCDLQHGSYPTQLAIKRSILDEALRRSRLDLPPDHPGPALSSPQPFGYRHRLRLHLDQVG 135

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL-TSQS 114
              +H      + E + I   +  +  IN  +  ++        LR  +  ++ + +   
Sbjct: 136 RLGFH---QGGSNEVVPIRRCLLATEPINRAIGALVDA-GWPARLRELVSAVELIHSPAD 191

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           D+ I+ L     L        +   + L A    +Q              D   +    A
Sbjct: 192 DRVILVLQATAALRPDSAADLVTALNRL-ADNTIVQAEPIGRSGDRARAADLCQD---FA 247

Query: 175 GRTLIYRQIEN--SFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARH 230
                YR   +   F Q N   N  ++E  L            L+L+CG GNFS+ L   
Sbjct: 248 VLGHAYRLCWDHRCFFQVNVRQNPRLIELALGLLPLSPPPRAALDLFCGMGNFSIPLGLM 307

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V  VE  + SV  A +N  A  +   +       +  +++   +             
Sbjct: 308 GTQVSGVEHNRTSVHWAEHNSRAAGLTTARFRSADVGQALRSLVARK------------A 355

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
           RF  + +DPPR GL      + +  P HIL ISC+P +L RDL+++    + I ++   D
Sbjct: 356 RFDCVLLDPPRQGLGKTAALLARLGPQHILSISCDPATLARDLALIVQNGYRIVQVTPVD 415

Query: 349 QFPYTRHMECGVLLVR 364
            FP T H+E   LL R
Sbjct: 416 MFPQTHHIETVALLER 431


>gi|288936340|ref|YP_003440399.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella variicola
           At-22]
 gi|288891049|gb|ADC59367.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella variicola
           At-22]
          Length = 375

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 142/382 (37%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L     QQLA+K+  LR ++ A  V    +        +R +A+  +    +    
Sbjct: 13  SCQWLERPVPQQLADKMADLRTLLAAIPVAAWGEPVSGPETAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +     +      +      + A++   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLHRDGTPVDLTDCPLYPAEFAPVFAVLKPFIARAGLTPYNVARKRGELKYLLLTASQQ 132

Query: 115 DQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
            + ++  +         L  A      +L   L      IQ +  A    + +I      
Sbjct: 133 GEMMLRFVLRSEAKLAQLRAALPWLQAQLPQ-LKVITANIQPVHMAIMEGEQEIFFTE-- 189

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + +    + +L+CG G F L
Sbjct: 190 -QQALGEVFNEVPLWIRPQSFFQTNPAVASRLYATARDWVRALPVQHMWDLFCGVGGFGL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    R+  +EIA  ++  AR + A   ++N+    + S +F                
Sbjct: 249 HCATPAMRLTGIEIAPEAIACARQSAAQLGLSNLHFQALDSTQFAT-------------- 294

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                  + + V+PPR G+       +   A P+I+Y SCN  ++  D++ L   + +ER
Sbjct: 295 -HEDDIPQLVLVNPPRRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARL-RGYRVER 352

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           + LFD FP+T H E   LLVR+
Sbjct: 353 VQLFDMFPHTAHYEVLTLLVRE 374


>gi|255326644|ref|ZP_05367720.1| 23S rRNA-methyltransferase RumB [Rothia mucilaginosa ATCC 25296]
 gi|255295861|gb|EET75202.1| 23S rRNA-methyltransferase RumB [Rothia mucilaginosa ATCC 25296]
          Length = 377

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 139/380 (36%), Gaps = 33/380 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +   Y  Q+  K +  R ++ A  Q+  L    S    +R +A+  +     +   
Sbjct: 13  SCPSIETAYTAQVQAKQEHARALLAAHPQLQWLDPVTSAEAGFRNKAKLVVGGSAKNPTL 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYLTSQ 113
            + D +T     +         I A +  +   I+         P  R +L  I    S 
Sbjct: 73  GIVDYRTGASTDLGECPLYMEPIQAAIPVLRELIQRADLTPYDIPNRRGELKNILVTASA 132

Query: 114 SDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DE 169
           + + +V  +   + L    R     L++ L         + R    ++  D + +    +
Sbjct: 133 AGELMVRFVLRSKKLLVPIRRQMDWLQEQLPNLAVLSVNLLREPVARVEGDEEIILSERQ 192

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            L +    L       SF Q N  +   M        + +    L +LYCG G F+L  A
Sbjct: 193 TLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPRSLWDLYCGVGGFALHAA 252

Query: 229 R--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
                  V  +EI+  +V +A+  +A   +  V      + EF  +              
Sbjct: 253 SVMDGGSVTGIEISAEAVASAQRTVAEYGLEGVGFSAQDAPEFAVS-------------- 298

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERL 344
                 + + V+PPR G+ ++    ++      ++Y SCN  +L +DL  + + +   + 
Sbjct: 299 -SGTVPQMLVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKDLERMPS-YAPVQG 356

Query: 345 ALFDQFPYTRHMECGVLLVR 364
            + D FP+T H E  VLL R
Sbjct: 357 RVLDMFPHTDHYEVMVLLQR 376


>gi|285808307|gb|ADC35838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [uncultured bacterium
           89]
          Length = 405

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 142/361 (39%), Gaps = 54/361 (14%)

Query: 10  YEQQLAEKVDRLRQMML---AFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL+ K   L + +     FQ P  + I  +EP  YR R + HI   G        ++
Sbjct: 91  YEAQLSAKRAILIETLTRVGKFQPPEDIHIVSAEPWGYRNRTQLHIAGTG----IGYLEE 146

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++ +   +D     S  IN  +  ++A +R     R  +  I+  T+++   +  L   R
Sbjct: 147 RSHKLCPVDRCPISSPRINQAIGTLVAMVRDSRWPRF-VRSIELFTNETGLQLNVLESSR 205

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +   + E       +                         V   +       +YR    
Sbjct: 206 PVARHFFEWCAEQLGS------------------------TVSGPIEYPSGGALYRVSHK 241

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF Q N  +   ++   L  T+G      +LY G G FS+ L + F +V AVE +  +V 
Sbjct: 242 SFFQVNRFLADQLVSLALEGTEGETA--ADLYAGVGLFSIPLRKRFAQVNAVESSGSAVR 299

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
              +N     V  V+  +  S  +   +    +F               +  DPPR+GL 
Sbjct: 300 DLIFNAERAEVA-VETYQQPSAAYLHNLAAAPDF---------------VLADPPRAGLG 343

Query: 306 -DATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLL 362
            D  + + +  P  I  ++C+P +L RDL+ +L+  + I  + + D FP T H+E  V L
Sbjct: 344 KDVVMELARLQPRKITIVACDPATLARDLAGLLAAGYKINGVEMVDLFPQTFHIETIVHL 403

Query: 363 V 363
            
Sbjct: 404 S 404


>gi|313902590|ref|ZP_07835990.1| RNA methyltransferase, TrmA family [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467156|gb|EFR62670.1| RNA methyltransferase, TrmA family [Thermaerobacter subterraneus
           DSM 13965]
          Length = 631

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 83/477 (17%), Positives = 144/477 (30%), Gaps = 119/477 (24%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH-DG 55
              L    Y  QLA K   +   +              +    P  YR +A   +    G
Sbjct: 155 GCRLQHLSYPAQLAWKRRLVVDALERVGRLEAPPVAETLGMDPPWFYRNKAALPVRRLPG 214

Query: 56  DDLYHIMFDQQTKERMRIDY--FMPGSLLINALMIEMMATIRLEP--------------- 98
             +    F   T   + ++         +I+ +   +   +  +P               
Sbjct: 215 GRVAMGFFAPGTHTVVDLEEHGCAIQHPVIDQVAAALRRWLEEDPDGRATSTYDEERHQG 274

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD----AWRECAIRLRDALHARKYQIQLIGR 154
           LLR  + ++   T +    +V        ++      +E    L   +     +      
Sbjct: 275 LLRHLVVRVGLRTGEVLAGLVINGDGLPGEERLARHLQEQVPALAGVVKNLNRRRGNAIL 334

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM----LEWVLAATKGIQ 210
             +T     R ++ +RL      L +R    SF Q N      +    L++ LA  +   
Sbjct: 335 GPETVPIAGRPWIVDRLG----GLEFRISLESFYQVNPVQAERLYQVALDYALAGREAGS 390

Query: 211 G-----------------------------------------------DLLELYCGNGNF 223
                                                            L++ Y G G  
Sbjct: 391 AATGSNPGAAVAERDTAAGRPARDAGATGARRDPGTGDGGTAAGDRPFWLIDAYAGIGTL 450

Query: 224 SLVLARHFD-------------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L+ A                 RV A+E+   +   AR N   N +  V+ +  + ++  
Sbjct: 451 ALLAAARLAAGTAGRGAAGSGYRVTAIEVVSEATADARVNAERNGLQGVEFITGAVEDVL 510

Query: 271 QAMRRE--REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPD 326
             +  E                R   I +DPPR G + A +        P I+Y+SCNP 
Sbjct: 511 PRLAAESQGGAGGGDGAAARGGRPDGILLDPPRKGCEPAALAACLELAPPRIVYVSCNPV 570

Query: 327 SLCRDLSILSTTHT--------------------IERLALFDQFPYTRHMECGVLLV 363
           +L RDL++L  T +                    +E +   D FP+T H+EC  LLV
Sbjct: 571 TLARDLAVLCDTGSPAAPAVHGSGRRRGRRARYRLEAVQPVDMFPHTAHVECAALLV 627


>gi|294664539|ref|ZP_06729884.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605701|gb|EFF49007.1| 23S rRNA uracil-5- -methyltransferase [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 491

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 139/374 (37%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 135 GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKK 194

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  + A I      +  + QI+++    D
Sbjct: 195 DKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPLLAALIEGMD-GKRDIPQIEFIAG-DD 252

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L +  R+  I      H     +Q  G  +   +      +  RL    
Sbjct: 253 AVALTIRHMQPLSERDRQGWITFAQE-HGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWD 311

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   +A       D +L+L+CG GNF+L LAR    V
Sbjct: 312 VELAFR--PLDFIQVNASLNQKMIAHAVALLDAKPDDRVLDLFCGLGNFTLPLARVVREV 369

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 370 VGVEGDAGLVARAKENAQRNGLDNAQFY---AADLTQDQRSAPWMRQ---------GFDK 417

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 418 LLLDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 477

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 478 HTAHVESIAVFERR 491


>gi|227893601|ref|ZP_04011406.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           ultunensis DSM 16047]
 gi|227864593|gb|EEJ72014.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           ultunensis DSM 16047]
          Length = 465

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 140/378 (37%), Gaps = 39/378 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFR--SEPI--HYRMRAEFHIWHDGDDLYHIMFD 64
           +Y+QQL  K DR+++++  +    +++ +    P+   YR      +      L    F+
Sbjct: 101 KYDQQLKFKEDRIKKLLNKYGFKEVKVNKILPSPLTKGYRNEIVLPVREVKGQLEVGFFE 160

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTSQSDQA 117
            +T   + ++  +  +  +   +  +   +R   +           +  ID   SQ  + 
Sbjct: 161 PRTGRFIPLNKSIITNEAVVTAVYAVRDILRKLKVPAYDPNTNSGFIRDIDVRRSQGKKG 220

Query: 118 -IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-------CLDRDYVDE 169
            IVTLI H        E    + + LH     +         +I           DYV++
Sbjct: 221 MIVTLITHENDRVDLPEIVGLITEKLHNVNGVVLNYNPHKTDEIFGKSNIPLWGNDYVED 280

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            L      + ++    S+ Q N      + +  L+       D L++ +CG G   L+ A
Sbjct: 281 EL----DGIQFKISPKSYFQANGSQLKPITDLALSLLDLKDTDKLIDAFCGVGTVGLLAA 336

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  ++  + S++ AR N   N ++N      S ++      +  E          
Sbjct: 337 KKVAAVRGIDAERVSIQDARENADTNKIDNATYYNGSVEQVLSRFAKNDE---------- 386

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLA 345
             +   I   PP  GL    V          I+Y S NPD++ RDL+      +T   + 
Sbjct: 387 --KGTVIMATPPAKGLSHGFVDAAAKMHPRRIVYGSTNPDTMVRDLACFKKKGYTCTEIT 444

Query: 346 LFDQFPYTRHMECGVLLV 363
             D  P T  ++C  +LV
Sbjct: 445 PIDTAPQTPEVKCFGVLV 462


>gi|300957062|ref|ZP_07169308.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           175-1]
 gi|300316202|gb|EFJ65986.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia coli MS
           175-1]
          Length = 358

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 136/373 (36%), Gaps = 39/373 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-- 67
            +QL+ K   L+ ++  F V             +R +A+  +    +     M  +    
Sbjct: 5   PEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTP 64

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQSDQAIVTLIY 123
           ++      +      + A +   +A   L P      R +L  I    SQSD  ++    
Sbjct: 65  EDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFV 124

Query: 124 HR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA 174
            R       L  A      +L   L      IQ +  A    +T+I L      + L   
Sbjct: 125 LRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE---QQALAER 180

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
              +       SF Q N  +   +        + +    + +L+CG G F L  A    +
Sbjct: 181 FNDVPLWIRPQSFFQTNPAVASQLYATARNWVRQLPVKHMWDLFCGVGGFGLHCATPDMQ 240

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +  +EIA  ++  A+ + A   +  ++   + S +F  A                    +
Sbjct: 241 LTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA---------------QGDVPE 285

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+       +    P  I+Y SCN  ++ +D+  L     IER+ LFD FP
Sbjct: 286 LVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGFRIERVQLFDMFP 344

Query: 352 YTRHMECGVLLVR 364
           +T H E   LLV+
Sbjct: 345 HTAHYEVLTLLVK 357


>gi|329999871|ref|ZP_08303541.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. MS
           92-3]
 gi|328538190|gb|EGF64342.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella sp. MS
           92-3]
          Length = 375

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 143/382 (37%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L     QQLA+K+  LR ++ A  V    +        +R +A+  +    +    
Sbjct: 13  SCQWLERPVPQQLADKMADLRTLLAAIPVAAWGEPVSGPEATFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +     +      +      + A +   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLHRDGTPVDLTDCPLYPAEFAPVFAALKPFIARAGLTPYNVARKRGELKYLLLTASQQ 132

Query: 115 DQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
            + ++  +         L  A      +L   L      IQ +  A    + +I      
Sbjct: 133 GEMMLRFVLRSEAKVAQLRAALPWLQAQLPQ-LSVITANIQPVHMAIMEGEQEIFFTE-- 189

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + +    + +L+CG G F L
Sbjct: 190 -QQALGEVFNEVPLWIRPQSFFQTNPAVASRLYATARDWVRALPVQHMWDLFCGVGGFGL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    R+  +EIA  ++  AR + A   ++N+    + S +F                
Sbjct: 249 HCATPTMRLTGIEIAPEAIACARQSAAQLGLSNLHFQALDSTQFAT-------------- 294

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
              +   + + V+PPR G+       +   A P+I+Y SCN  ++  D++ LS  + +ER
Sbjct: 295 -HEADAPQLVLVNPPRRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLS-GYRVER 352

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           + LFD FP+T H E   LLVR+
Sbjct: 353 VQLFDMFPHTAHYEVLTLLVRE 374


>gi|152969447|ref|YP_001334556.1| 23S rRNA methyluridine methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150954296|gb|ABR76326.1| 23S rRNA (uracil-5-)-methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 375

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 143/382 (37%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L     QQLA+K+  LR ++ A  V    +        +R +A+  +    +    
Sbjct: 13  SCQWLERPVPQQLADKMADLRTLLAAIPVAAWGEPVSGPEAAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +     +      +      + A +   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLYRDGTPVDLTDCPLYPAEFAPVFAALKPFIARAGLTPYNVARKRGELKYLLLTASQQ 132

Query: 115 DQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
            + ++  +         L  A      +L   L      IQ +  A    + +I      
Sbjct: 133 GEMMLRFVLRSEAKVAQLRAALPWLQAQLPQ-LSVITANIQPVHMAIMEGEQEIFFTE-- 189

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + +    + +L+CG G F L
Sbjct: 190 -QQALGEVFNGVPLWIRPQSFFQTNPAVASRLYATARDWVRALPVQHMWDLFCGVGGFGL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    R+  +EIA  ++  AR + A   ++N+    + S +F                
Sbjct: 249 HCATPTMRLTGIEIAPEAIACARQSAAQLGLSNLHFQALDSTQFAT-------------- 294

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
              +   + + V+PPR G+       +   A P+I+Y SCN  ++  D++ LS  + +ER
Sbjct: 295 -HEADAPQLVLVNPPRRGIGAELCDYLSRMAPPYIIYSSCNARTMATDIARLS-GYRVER 352

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           + LFD FP+T H E   LLVR+
Sbjct: 353 VQLFDMFPHTAHYEVLTLLVRE 374


>gi|264679193|ref|YP_003279100.1| RNA methyltransferase, TrmA family [Comamonas testosteroni CNB-2]
 gi|262209706|gb|ACY33804.1| RNA methyltransferase, TrmA family [Comamonas testosteroni CNB-2]
          Length = 519

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 137/405 (33%), Gaps = 51/405 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              +       Q+A K   L   +        +            YR R+   + +    
Sbjct: 123 GCKMQHLHVAAQVAIKQRVLEDNLWHLAKVKPETLLRPIEGPAWGYRFRSRLSVRYVAKK 182

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     +++++    ++        ++A+++ M A I      R    QI+       
Sbjct: 183 GKVLVGFHERKSRYIADMEVCKILPPHVDAMLMPMRALIASMDA-RETCPQIEVACGDHV 241

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R L+        RLRD    +  Q  L  +   T   ++         +  
Sbjct: 242 TALVL----RHLEPLSDADKQRLRDFAAEQNVQWWLQPKGPDTVHLMEEGGTQLSYGLPD 297

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     V
Sbjct: 298 FGITMPFKPTDFTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFTLPIATMAREV 357

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E ++  V+ +  N AAN+V   +  +++S  F         F     + I       
Sbjct: 358 LGIEGSETLVKRSHENYAANNVTRSEDDKLASTSFV----ARNLFEMTPAMLIADGNSDK 413

Query: 295 IFVDPPRSGLDDATVGMV---------------------------------QAYPHILYI 321
             VDPPR G    +  +                                  Q    I+Y+
Sbjct: 414 WLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFPKRIVYV 473

Query: 322 SCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP +L RD  +L     +      + + FP+T H+E   +  R
Sbjct: 474 SCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 518


>gi|88802991|ref|ZP_01118518.1| tRNA (uracil-5-) -methyltransferase [Polaribacter irgensii 23-P]
 gi|88781849|gb|EAR13027.1| tRNA (uracil-5-) -methyltransferase [Polaribacter irgensii 23-P]
          Length = 485

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 142/402 (35%), Gaps = 64/402 (15%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEF--------HIWHDG 55
           E Q   K +    +                 +      HYR + E+         I    
Sbjct: 98  ELQHKYKKESTLSLFKKIGKVENIDALFDEFVTSPNVFHYRNKMEYGFSAIGYDRITKRD 157

Query: 56  DDLYHIMFDQQT---------KERMRIDYFMPGSLL-INALMIE----MMATIRLEPLLR 101
            D + + F ++          K+    D  M   L  I    IE         + E   R
Sbjct: 158 KDEFTLGFKRRGVWWMGDDLNKDSGLFDKQMEDHLKNIKQYCIETGLDPWHGPKREGFFR 217

Query: 102 AKLFQIDYLTSQSDQAIVTLIYH-------RLLDDAWRECAIRLRDALHARKYQI--QLI 152
             + +  + T +    +VT           +  D        RL   LH    +   + I
Sbjct: 218 YFVVRKSFKTDELLCNLVTTSPELEKFDLNKFADFLKDIFGKRLAGLLHTINDETGDRTI 277

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
             +    +   +D + E+L      L +     SF Q N      +   V+      +  
Sbjct: 278 ATSGSLNLVYGKDKIVEQLL----GLDFEISMKSFFQTNPKCAEKLYNKVVEYVLEDKTK 333

Query: 213 L-----LELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +     ++L+CG G    ++A      +++ V+I   ++E A  N   N++  V+     
Sbjct: 334 VDNTVVMDLFCGTGTIGQIVASKSKNAQIIGVDIVASAIEDAEKNAKRNNITGVQFFAAD 393

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
             +F            L     +  + KTI +DP R+G+   T+  +       ++Y+SC
Sbjct: 394 VGKF------------LTSHPEYENKIKTIILDPARAGIAPKTLQKIINLNADRMVYVSC 441

Query: 324 NPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           NP +  RD  +L    + I++++L DQFP+T H+E  VL  +
Sbjct: 442 NPATQARDTELLGAAGYVIKKMSLVDQFPHTAHIETVVLFEK 483


>gi|90408288|ref|ZP_01216453.1| 23S rRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3]
 gi|90310589|gb|EAS38709.1| 23S rRNA (uracil-5-)-methyltransferase [Psychromonas sp. CNPT3]
          Length = 445

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 27/372 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
              L   +   Q+  K   L+ +   F   N         S P  YR  A F +  D   
Sbjct: 91  GCQLQHVEQSAQIVIKEAGLKSLFQRFAKLNNISLAPSVYSSPWGYRRTARFGLQFDRKR 150

Query: 58  LYHIMFDQ--QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
               M  +  QT + ++          +  ++IE + ++     ++  L  ++ L S+  
Sbjct: 151 KELNMGFRLAQTNQLIKQKICPVLLPQL-EILIEPLHSLLNSLDIKEHLGHVELLNSEQG 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            AIV L + + L    ++  +R+ +  + ++       ++N+ K+ +  + +   L +  
Sbjct: 210 -AIVLLRHLKALT---KKDTLRIEEFSNQQQLNFFSQPQSNEFKLLVGVNKLTYSLPLWN 265

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
               +      F Q NA +N  M++  +      + D +L+L+CG GNF+L +AR   +V
Sbjct: 266 --CCFEFSVTDFLQVNAQVNQKMVKQAIQWLALDENDTVLDLFCGLGNFTLPIARQVKKV 323

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE  +  VE A +N   N+VNN +  +                N +        +F  
Sbjct: 324 VGVEGVQQMVERASHNAQLNNVNNSEFYQAD-----------LSSNDIYKQQWAQQKFTK 372

Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPY 352
           + +DP R+G  +    +      HI+YI+C+  +L RD   +L   + +++L L D FP 
Sbjct: 373 VLLDPARAGAFNCMEFIASLEVSHIVYIACDAVTLARDSYLLLEKGYKLDKLGLLDMFPQ 432

Query: 353 TRHMECGVLLVR 364
           T+HME   L +R
Sbjct: 433 TKHMESMALFLR 444


>gi|288817344|ref|YP_003431691.1| RNA methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|288786743|dbj|BAI68490.1| RNA methyltransferase [Hydrogenobacter thermophilus TK-6]
 gi|308750951|gb|ADO44434.1| RNA methyltransferase, TrmA family [Hydrogenobacter thermophilus
           TK-6]
          Length = 420

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 150/371 (40%), Gaps = 37/371 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGD 56
              L     +QQ+  K D L + +       +      I   +   YR R +F +     
Sbjct: 77  GCQLQHIDTDQQVRIKEDILIESLRRIGNLEISALGESIRSKQDFGYRTRVQFKV----S 132

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
           +     F   T E ++ID  +     +N L+  +    +  P     L ++  L S S+ 
Sbjct: 133 NGSLGFFAWGTHELVKIDQCLLVHPAMNDLIPSLQELSKKIP----HLQELHVLYSPSED 188

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG- 175
             +  +    + DA  E   +L++ +  +K  + +   +      L R ++    T    
Sbjct: 189 EFLLKVITPTIYDA--EKLRKLKENVLPKKV-VGIGNYSKLGDHLLKRYHIGRSFTFMQV 245

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           +   YR   +SF Q N  +   +L  V+      +  ++EL+CG G FS+ L+     V+
Sbjct: 246 KNYRYRVSNDSFFQINFTLWEDLLNSVVVRD---KRRVIELHCGAGFFSIPLSEGNHFVI 302

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           + +    +++ A+YN   N  +N+     S+ +  +                       +
Sbjct: 303 SSDTNATAIKDAQYNAKLNSRDNIVFFHESAHQTLKK--------------HAGETIDLL 348

Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
           F+DPPR GL    + +V       I+Y+SCNP +L RDL  ++   ++++ + L D FP 
Sbjct: 349 FLDPPRGGLTTDELSLVLQNKPKEIVYVSCNPTTLARDLGKMVRGGYSLKSVRLIDNFPQ 408

Query: 353 TRHMECGVLLV 363
           T H+E    L 
Sbjct: 409 TYHIESVAYLE 419


>gi|260219678|emb|CBA26523.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 489

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 134/394 (34%), Gaps = 34/394 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW--HDG 55
              +       Q+A K   L   +                     YR R+   +      
Sbjct: 95  GCKMQHLHVGAQVAVKQRVLEDNLWHIGKLKPDNVVRPIEGPAWGYRYRSRLSVRFVRKK 154

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA----KLFQIDYLT 111
             +     +++++    +      +  ++A+++ +   I     +      +L   D  T
Sbjct: 155 GAVLIGFHERKSRYVADMKVCPVLAPRVSAMLLPLRQLIESMDAVETIPQLELAMGDMGT 214

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR-KYQIQLIGRANKTKICLDRDYVDER 170
           SQ  QA V  +  R ++        RLR     +   Q  L  +  +T   LD     E 
Sbjct: 215 SQDSQAGVIALVMRHMEPLSEADKGRLRAFAATQPGLQWWLQPKGPETIHRLDELPGHET 274

Query: 171 ------LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNF 223
                 L   G T+ +R     FTQ N  IN  ++   L          +++ +CG GNF
Sbjct: 275 GDLAYTLPDYGITMPFR--PTDFTQVNPHINRVLVSRALGLLQVQKTERVIDWFCGLGNF 332

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L LA     VL VE A+  V  +R N+  N      +   +             F    
Sbjct: 333 TLPLATQAREVLGVEGAESLVARSRENLTFNSTQKKALAPDAPALAATKFVARNLFEMTP 392

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY------------PHILYISCNPDSLCRD 331
           ++ I         +DPPR G       +   +              I+Y+SC P +L RD
Sbjct: 393 ELLIADGTADKWLIDPPREGAYALVQALAALHQQPELRKGWTPPRRIVYVSCAPSTLARD 452

Query: 332 LSIL--STTHTIERLALFDQFPYTRHMECGVLLV 363
             +L     +T  +  + + FP+T H+E   +  
Sbjct: 453 AGVLVNEAGYTCTKAGVVNMFPHTAHVESIAVFE 486


>gi|194751718|ref|XP_001958172.1| GF10790 [Drosophila ananassae]
 gi|190625454|gb|EDV40978.1| GF10790 [Drosophila ananassae]
          Length = 613

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 149/420 (35%), Gaps = 63/420 (15%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQ------------IFRSEPI-HYRM 45
             L    YE Q+  K + +  ++  +       N Q            +  S  +  YR 
Sbjct: 156 CPLAELPYEDQVRHKAEEMTNLLKKYTQELWRHNPQAKKTVDKIQFHGVVPSPTVNGYRN 215

Query: 46  RAEFHIWHDGDD-----LYHIMFDQQTKERMRID---YFMPGSLLINALMIEMMATIRLE 97
           + EF +  + +           +   + E   ++   +    +        +++   +  
Sbjct: 216 KNEFTVGKNSEGEIVVGFRLGCYSDGSVEVAGVEDLPHLPEQAKWAAQSFQKLVRQSKFL 275

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHA---- 144
           P          R  + +    T +    +V  IY   LD    RE    L+         
Sbjct: 276 PFNPDGNLGHFRQLMVRCSRSTGE--LMLVAGIYSSNLDLSEQRELKKELKTFYENCENE 333

Query: 145 ----RKYQIQLIGRANKTKICLDRDYVDER--LTVAGRTLIYRQIENSFTQPNAGINVHM 198
                    Q +      ++    +++     +T   + L +R    +F Q N      +
Sbjct: 334 PFKCTSLYYQDVKHREAGQMVNPVEHILGTTHITDTIQGLKFRISPLAFFQINTESANLL 393

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
            +  +      +   LL++ CG G  +L  A+H  +V+ VEI   ++  A +N   N + 
Sbjct: 394 YQKAIDLVGPTKDTTLLDICCGTGTITLSFAKHCRKVMGVEIVPDAIRDAEFNAMVNGIT 453

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---A 314
           N K    +S +F ++M R+  + +     +         VDPPR+GL + ++  ++   A
Sbjct: 454 NSKFYTGNSDDFIKSMVRDALYEQEPGKPVDL----VALVDPPRAGLHNRSITAIRSASA 509

Query: 315 YPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              ++Y+SCNP S  R+   L               +     D FP+T H E  +L  R+
Sbjct: 510 IKRLIYVSCNPHSAKRNFIDLARPESKHYKGEPFYPKSAVAVDMFPHTTHTELIILFERE 569


>gi|332669814|ref|YP_004452822.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas fimi ATCC
           484]
 gi|332338852|gb|AEE45435.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas fimi ATCC
           484]
          Length = 375

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 133/384 (34%), Gaps = 41/384 (10%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           +S   +   Y  QLA K     +++ A  +  L    S    +R +A+  +    DD   
Sbjct: 12  LSCAWMGRPYAHQLAAKQSLCAELLAAHDLTWLDPVASPESGFRNKAKMVVGGTVDDPTL 71

Query: 61  IMFDQQTKERMRIDYF--MPGSL-----LINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
            + D      + +      P SL     ++ A +          P  R +L  +    S 
Sbjct: 72  GILDAAG-AGVDLQDCGLYPASLAATFPVLAAFVTRARLEPYDVPARRGELKHLLVTQSP 130

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-----KTKICLDRD--- 165
             + +V  +         +E   RLR  L   + Q+  +  A+     + K  L+     
Sbjct: 131 DGELMVRFVLRS------QEAVARLRKHLPWLRAQLPRLVVASVNLQPEHKAVLEGPREI 184

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
               DE L +    L       SF Q N  +   +               + +LYCG G 
Sbjct: 185 LLTDDETLRMRVNGLDLHLRPQSFFQTNTDVAAALYRQAATWVDDAAPASVWDLYCGVGG 244

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+L +A     V+ VE +  +V +A        +         +  F  A+R        
Sbjct: 245 FALHVADGTRDVVGVETSGEAVASATLTARDAGLARTTFHADDATAF--ALRA------- 295

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHT 340
                       + V+PPR G+     G +       ++Y SCN  SL RDL+ + +   
Sbjct: 296 ----APRDVPDLVVVNPPRRGIGADLAGWLDRSGVGRVVYSSCNAQSLARDLAAMPSL-R 350

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
             R  + D FP T H E   LL R
Sbjct: 351 PVRGRVLDMFPQTTHYEVVTLLER 374


>gi|297539105|ref|YP_003674874.1| TrmA family RNA methyltransferase [Methylotenera sp. 301]
 gi|297258452|gb|ADI30297.1| RNA methyltransferase, TrmA family [Methylotenera sp. 301]
          Length = 457

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 143/381 (37%), Gaps = 34/381 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
              L    +  Q+A K   L   +        +            YR +A   + +    
Sbjct: 90  GCKLQHLDFAAQVAAKQRLLENDLWHIGKVKAENMLPPLYGPTWGYRHKARLSVKYVEKK 149

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           + +     ++ T+    ++        ++AL+  +   I L   +R KL QI+    ++D
Sbjct: 150 ERVLVGFNEKATRYVADMNSCEVLVPEVSALIEPLQHMI-LHLSIRDKLPQIELAVGEAD 208

Query: 116 QAI-----VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYV 167
                   V ++  R+++    +    L +       QI    +   T      L    +
Sbjct: 209 LEAEKDYPVIVLILRIMEALNPDDEALLTNFADTHAVQIWTQTKGPDTITPFYPLAGSAL 268

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
              L     T  ++   N FTQ N  IN  ML   +      Q + + + +CG GNF+L 
Sbjct: 269 KYSLPEFDLTYPFK--PNEFTQVNPHINRVMLRRAMQLLAPQQNERIADFFCGIGNFTLP 326

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +A    +VL +E     V+ A  + A N++ +VK       + T++   E          
Sbjct: 327 IAHSGAQVLGLEGLANLVDRANESAALNNIKHVKFGVADLFKMTESSLAEL--------- 377

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--STTHTIE 342
                F    VDPPR G  +    +    A   I+Y+SCNP +L RD  +L     +T+ 
Sbjct: 378 ---GHFDKWLVDPPRDGAFELVKAITPETAPKLIVYVSCNPATLARDAGVLVNEKGYTLA 434

Query: 343 RLALFDQFPYTRHMECGVLLV 363
              + + FP+T H+E   L  
Sbjct: 435 AAGVINMFPHTAHVESIALFK 455


>gi|255073729|ref|XP_002500539.1| predicted protein [Micromonas sp. RCC299]
 gi|226515802|gb|ACO61797.1| predicted protein [Micromonas sp. RCC299]
          Length = 1143

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 124/494 (25%), Positives = 196/494 (39%), Gaps = 138/494 (27%)

Query: 7    IDQYEQQLAEKVDRLRQMMLAFQV-----------------PNLQIFRSEPIHYRMRAEF 49
               Y   L  KV  L ++                          ++F S P+++R R  F
Sbjct: 652  ASTYSAALDAKVAELERLFSPLMQQASIPILNAKGVDRSVSVRPEVFPSPPLNFRSRCRF 711

Query: 50   HIWHD-------------------GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM 90
             +  +                   G  L + M+++  K  + I  F      I  LM  +
Sbjct: 712  QVMWEDAPVTAESTGITPGESVEPGRRLSYRMWNKG-KPTVPITEFPMALREIEELMPAV 770

Query: 91   MATIRLEPLLRAKLFQIDYLTSQS--DQAIVTLIYHRLLDDAWRECAI----RLRDALHA 144
            +      P L   L  I +L S+      +VT++Y R +D+AW+  A     RL+ A+  
Sbjct: 771  LREAEAHPELGDGLQAIHFLASRGIRGGMLVTMVYGRPIDEAWKMAAEGPRARLKAAMVD 830

Query: 145  RKYQI---------------------------QLIGRANKTKICLDRD-YVDERLTV-AG 175
             + ++                            ++GR+  T+I +    +V E L +  G
Sbjct: 831  IRERVYGGGDDDGFDGFAGPRGDDEELDATALNILGRSRGTQIVVGDACHVFETLALRDG 890

Query: 176  RTLIYRQIENSFTQPNAGINVHMLEWVLAA----------------TKGIQGDLLELYCG 219
            R L YRQ E +F+ PN+ +    L+W+                    +     LLELY G
Sbjct: 891  RRLRYRQAEGAFSNPNSFMAESTLDWLCDCAATTVREALGGTSEHSAEAAPPSLLELYSG 950

Query: 220  NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            NGN ++ LA++FD V AVE++    EAAR N+  N V N K++   S+   + M R ++ 
Sbjct: 951  NGNHTVALAKYFDSVAAVELSGVLCEAARENLERNGVENAKVLHSPSESVARGMLRRKKR 1010

Query: 280  NR--------------------------LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            +                             + DI++Y    + VDPPR+GLD  T+ +V 
Sbjct: 1011 HEEGRVGKAAMAAAATGAGDGSKRGDGSGMEFDINAY--DVVLVDPPRAGLDPDTLDLVS 1068

Query: 314  AYPHILYISCNPD----------SLCRDLSI------------LSTTHTIERLALFDQFP 351
             +  +LYISC+P              R L              L+ TH + R A+FD FP
Sbjct: 1069 RFDVVLYISCDPRKGLLENAVGPHAARALDTGEFEGEFKGWSGLARTHDLVRFAVFDHFP 1128

Query: 352  YTRHMECGVLLVRK 365
            YTRH+ECG   VR+
Sbjct: 1129 YTRHIECGACFVRR 1142


>gi|311280257|ref|YP_003942488.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacter cloacae
           SCF1]
 gi|308749452|gb|ADO49204.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacter cloacae
           SCF1]
          Length = 376

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 137/383 (35%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     QQL  K+  L+ ++    V             +R +A+  +    +    
Sbjct: 13  SCQWIEQPVSQQLLAKMSDLQALLSDLPVQEWHAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M  +    ++      + P    + A++   +A   L P         L+  L     L
Sbjct: 73  GMLRRDGTPEDLTHCPLYPPAFAAVFAVLKPFIARAGLTPYNVARRRGELKYLLLTESQL 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
                   V     +L  L  A      +L   L      IQ +  A      +I L   
Sbjct: 133 DGGMMLRFVLRSTGKLEQLRAALPWLQQQLPQ-LKVISVNIQPVHMAIMEGDEEIFLTGA 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
                L      +       SF Q N  +   +        +G+    + +L+CG G F 
Sbjct: 192 QA---LAENFNGVPLWIRPQSFFQTNPTVATSLYATARDWVRGLPVTHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     +  +EIA  ++  A+ + A   + N++   + S +F               
Sbjct: 249 LHCATPAMTLTGIEIAPEAIACAKQSAAELGLTNLRFQALDSTQFAVG------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR G+ +A    +   A  +I+Y SCN  S+ +D++ L   + IE
Sbjct: 297 ---QGEAPGLVLVNPPRRGIGEALCAYLDRMAPDYIVYSSCNAQSMAKDIARLPH-YRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+ LFD FP+T H E   LLVR+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVRE 375


>gi|325926989|ref|ZP_08188264.1| 23S rRNA m(5)U-1939 methyltransferase family [Xanthomonas perforans
           91-118]
 gi|325542648|gb|EGD14115.1| 23S rRNA m(5)U-1939 methyltransferase family [Xanthomonas perforans
           91-118]
          Length = 444

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 140/374 (37%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 88  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  + A I      +  + QI+++    D
Sbjct: 148 DKTLVGFRELDPRFVADLSICYTVIPQIGEKIPLLAALIEGMD-GKRDIPQIEFIAG-DD 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L +  R+  +      H     +Q  G  +   +      +  RL    
Sbjct: 206 AVALTIRHMQPLSERDRQAWVAFAQE-HGFAIFLQPGGVDSVHPLWPQDVPLSFRLPQWE 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   +A  +    D +L+L+CG GNF+L LAR    V
Sbjct: 265 VELAFR--PLDFIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 323 VGVEGDAGLVARAKENAQRNGLDNAQFH---AADLTQDQRSAPWMRQ---------GFDK 370

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 371 LLLDPPRSGALEVLQQLPLKTFDRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 430

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 431 HTAHVESIAVFERR 444


>gi|289662803|ref|ZP_06484384.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 444

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 139/374 (37%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 88  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  ++A +      +  + QI+++    D
Sbjct: 148 DKTLIGFRELDPRFVADLSVCYTVIPQIGEKIP-LLAALVEGMDGKRDIPQIEFIAG-DD 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L +  ++  I      H     +Q  G  +   +      +  RL    
Sbjct: 206 AVALTIRHMQPLSERDQQAWIAFAQE-HGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWD 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V
Sbjct: 265 VELAFR--PLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N + N +     + + TQ  R      +          F  
Sbjct: 323 VGVEGDAGLVARAKDNAQRNGLENAQFY---AADLTQDQRNTPWMRQ---------GFDK 370

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 371 LLLDPPRSGALEVLQQLPLKKFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 430

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 431 HTAHVESIAVFERR 444


>gi|253990336|ref|YP_003041692.1| 23S rRNA methyluridine methyltransferase [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781786|emb|CAQ84949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Photorhabdus
           asymbiotica]
          Length = 377

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 141/380 (37%), Gaps = 37/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL +K   L+Q++        L    SE   +R +A+  +    +    
Sbjct: 13  SCQWLEKPYFQQLEDKQRNLKQLLAQTIVGQWLSPIASEQSTFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M  +     +      + P    +  ++   +A   L P         L+  L      
Sbjct: 73  GMLHRDGIAVDLCNCPLYPPHFQHVFDVVKSFIACAGLTPYNVARKRGELKYLLLTESRN 132

Query: 111 TSQSDQAIVTLIYHR--LLDDAWRECAIRLRDALHARKYQIQLIGRA--NKTKICLDRDY 166
           + +     V     +   L  A  +   +L   L      IQ I  A     K  L  + 
Sbjct: 133 SGEMMLRFVLRSETKIAQLKRALPQLRAQLPQ-LTVISANIQPIHMAILEGEKEILFTE- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +      +SF Q N  I   +        + ++   + +L+CG G F L
Sbjct: 191 -QKVLKEEFNGIPLYIRPHSFFQTNPKIAAELYATAGRWARELKINSMWDLFCGVGGFGL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    R+  +EI+  +++ AR +     + N++   + S  F  A  +  E       
Sbjct: 250 HCADKNTRLTGIEISPEAIDCARDSAKTLGLENIEFQALDSTRFAIAKEQIPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR G+       +      +ILY SCN  ++ +D++ L+  + +E+
Sbjct: 304 ---------VLVNPPRRGIGKELCDYLSRMVPGYILYSSCNAQTMAKDIAALAN-YRVEK 353

Query: 344 LALFDQFPYTRHMECGVLLV 363
           + LFD FP+T H E   LLV
Sbjct: 354 IQLFDMFPHTEHYEVLTLLV 373


>gi|271500850|ref|YP_003333875.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Dickeya dadantii
           Ech586]
 gi|270344405|gb|ACZ77170.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Dickeya dadantii
           Ech586]
          Length = 376

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 134/383 (34%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQ+ +K   L +++    V   L  F S    +R +A+  +    +    
Sbjct: 13  SCQWLETDYPQQIIDKQQHLSKLLADHPVQRWLTPFTSPQTAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        D           F    + I    +      R    L+  L     L
Sbjct: 73  GMLHRDGSAVDLCDCPLYPDSFAPVFSVLKVFIARAGLTPYNVARRRGELKYLLLTQSTL 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           +      +V     +L  L  A      +L   L      IQ + +A      +I L   
Sbjct: 133 SGCFMLRLVLRSETKLAQLRAALPWLQQQLPQ-LTVISANIQPVHQAILEGDQEIPLTPA 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              E        +       SF Q N  +   + +        +    L +L+CG G F 
Sbjct: 192 QALEE---RFNQVPLYIRPQSFFQTNPVVAAALYDTARQWVSTLPIRSLWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     +  +EI+  ++  A+++     + NV    + S  F               
Sbjct: 249 LHCAGPDRVLTGIEISPEAIACAQHSATLLGLENVSFAALDSTRFAVG------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR G+       +   A P++LY SCN +S+ +D++ L   + I+
Sbjct: 297 ---EMQTPDLVIVNPPRRGIGAELCDYLSRMAPPYLLYSSCNAESMAKDIARLPA-YQIQ 352

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           ++ LFD FP+T H E   LL R+
Sbjct: 353 QVQLFDMFPHTAHYEVLTLLQRR 375


>gi|162447431|ref|YP_001620563.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985538|gb|ABX81187.1| RNA methyltransferase, TrmA family, putative [Acholeplasma
           laidlawii PG-8A]
          Length = 380

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 136/379 (35%), Gaps = 43/379 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRA---------------EFHIWH 53
            Y++QL  K   ++ +     +P   +    P  YR +A                  ++ 
Sbjct: 23  PYKEQLQVKEKYIKSLFNREFLP--IVPNPVPRGYRHKAVLSATNVNVNNNQQIRLGLFI 80

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           +G             ++     F     L+     +  A    + +++  + +  + T  
Sbjct: 81  EGTTKIKPKLGHFLHDKEIDLVFETVEKLLIKYKHKAYAKNYRQGIIKHVMIRKSFKTGD 140

Query: 114 SDQAIVTLIY----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
                 T +     H+ + +        ++  +     +        + +I   + ++ +
Sbjct: 141 LMVIFSTQLNNFPNHKKIVNELIALHPNVKTVIQNIHKKDSKFVLLEEQRILYGKGFIID 200

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +      + ++   N+F Q N     ++ + V       + D+ ++ Y G G  +L+ +
Sbjct: 201 SIG----DIDFKISANAFYQINPMQMFNLYDKVFEFAGIEKTDVVIDAYSGIGTITLLAS 256

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           ++  +V  +EI   S + A  N   N + N + +    +   +                 
Sbjct: 257 KYAKKVYGLEINPASHKDAIDNKRMNQITNAEFILGDVEHTLENF--------------- 301

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
           + +  T+ +DP R G     +  V       I+Y+SCNPD+  RD   L   + + ++  
Sbjct: 302 TDKVDTLIMDPARDGASLKFIQTVLKLKPKKIVYVSCNPDTQERDYKQLRNFYNLTKILP 361

Query: 347 FDQFPYTRHMECGVLLVRK 365
           FD F YT H+E  VLL  K
Sbjct: 362 FDMFSYTPHVENIVLLELK 380


>gi|256833599|ref|YP_003162326.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Jonesia denitrificans
           DSM 20603]
 gi|256687130|gb|ACV10023.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Jonesia denitrificans
           DSM 20603]
          Length = 382

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 147/386 (38%), Gaps = 43/386 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  LL   YE+QLA K   +  ++  +  +  L    S    +R +A+  +    D+   
Sbjct: 13  SCALLDIPYERQLATKAADVHALLGEYPDLDWLPPVASAQAGFRNKAKMAVSGTADNPIL 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTSQ 113
            + D  +   + +      +  +  ++  + A I    +        R +L  +    S 
Sbjct: 73  GILDA-SFGGVDLRDCPLYTQGMQEVLDAVRAFIMAARIEPYRVADRRGELKYVLVTESP 131

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHAR-----KYQIQLIGRANKTKICLDRDYVD 168
             + +V  +         +E   R+   L        + ++  +    + K  L+ D   
Sbjct: 132 DSEYMVRFVARS------QEPVTRISKHLPGWLAENPQVRVVTVNLQPEHKAILEGD--R 183

Query: 169 ERLTVAGRTLIYRQI-------ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGN 220
           E +     +L  R           SF Q N  +  H+           +   + +L+CG 
Sbjct: 184 EIVLTKDNSLTMRVGDIPLYLRPQSFFQTNTPVAAHLYRQAEQWIADARPQHVWDLFCGV 243

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G F+L  A H +RV  VEI+  ++E+AR + A   + NV    + +  F+          
Sbjct: 244 GGFALHAAPHANRVTGVEISAEAIESARTSAAERALTNVTFDALDATTFSTGHSAR---- 299

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTT 338
                 +       + V+PPR G+       + A     ++Y SCN  SL +DL+ +   
Sbjct: 300 ------LADGGPDLVVVNPPRRGIGVDLAEWLNASDAHTVVYSSCNARSLAKDLTAMPQ- 352

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
               R  LFD FP+T H+E  VL+ +
Sbjct: 353 FQPTRARLFDMFPHTNHVETVVLMSK 378


>gi|158300145|ref|XP_320147.4| AGAP012408-PA [Anopheles gambiae str. PEST]
 gi|157013016|gb|EAA00138.4| AGAP012408-PA [Anopheles gambiae str. PEST]
          Length = 577

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 149/427 (34%), Gaps = 72/427 (16%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPI--HY 43
           Y++QL +K   +  ++  F                             +  R  P+   Y
Sbjct: 138 YDEQLKQKQSEMENVLQKFGKELWSSIPTLRTFVEKQRLLHGGLPCAFEPIRPSPMQDGY 197

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQT-----------KERMRIDYFMPGSLLINALMIE--- 89
           R + EF I  D   +  + F   +                I   M  ++++    ++   
Sbjct: 198 RNKCEFSIGKDALGVKRVGFRVGSYSNGFLEVESIAHLKHIPECMKQTVVLFEQFVQSSP 257

Query: 90  --MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKY 147
             + +    +   R    ++ + T Q    +V +    L ++  +     + + L +   
Sbjct: 258 FDVYSAETYQGHFRQLTVRMSHATGQVM-VVVGVHLQSLSEEEKQTMKSSIVECLTSEPG 316

Query: 148 QIQLIGRANKTKI----------CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           +   I   +   I           ++  Y +  +      L +R    +F Q N      
Sbjct: 317 KQAGISSIHFEVIQKRQQGQYTNPIEHLYGETHIEDTILGLTFRISPAAFFQINTPAAEV 376

Query: 198 MLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +  A       +L++ CG G   L  ARH  +VL V+I + ++E A++N   N +
Sbjct: 377 LYQCAIDVAAPSKSTSILDICCGTGTIGLCFARHCKQVLGVDIVEQAIEDAKHNAQKNGI 436

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---Q 313
            N      +S +   ++       R  +I    +      VDPPR+GL   ++  +   +
Sbjct: 437 ENCSFFAGNSDDLIMSLI------RHANIMPDQHESLIAIVDPPRAGLHIRSITQLRNAR 490

Query: 314 AYPHILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
               ++Y+SC+P S  ++   L               ++    D FP+T H E  +L  R
Sbjct: 491 GLDKLVYVSCSPQSAIKNWVDLMRPCSKQLRGEPFVAKKAMAVDLFPHTPHTELVILFER 550

Query: 365 KPSGWHQ 371
           +     +
Sbjct: 551 EKESKQE 557


>gi|238751797|ref|ZP_04613284.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia rohdei ATCC
           43380]
 gi|238709926|gb|EEQ02157.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia rohdei ATCC
           43380]
          Length = 375

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 141/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K   L  ++    V   L         +R +A+  +    +    
Sbjct: 13  SCQWLDKPYPQQLADKQHHLEGLLSGHGVSQWLDPVFGRENAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +     +      +      + A++   +A   L P      R +L  +    S S
Sbjct: 73  GMLHRDGSAVDLCACPLYPASFAPVFAVLKTFIARAGLTPYNVARKRGELKFLLLTESTS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
              ++     R       L  A      +L   L      IQ +  A    + +I L   
Sbjct: 133 GGELMLRFVLRSETKLAQLRAALPWLQQQLPQ-LAVISANIQPVHMAILEGEQEIALTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +  D + +L+CG G F 
Sbjct: 191 --QQSLLEWFNQVPLFIRPQSFFQTNPQVAAALYATARQWVRALNIDSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EI+  ++  A+ +     + NV    + S  F  A            
Sbjct: 249 LHCADTQTQLTGIEISAEAIMCAQQSAKKLGLKNVTFAALDSTHFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +   + + V+PPR G+       +   A   ILY SCN +++ +D+++L+  + IE
Sbjct: 297 ---ETQVPQLVLVNPPRRGIGAQLCEYLSQMAPEFILYSSCNAETMAKDINLLAE-YRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LL++
Sbjct: 353 RVQLFDMFPHTSHYEVLTLLIK 374


>gi|229829260|ref|ZP_04455329.1| hypothetical protein GCWU000342_01347 [Shuttleworthia satelles DSM
           14600]
 gi|229792423|gb|EEP28537.1| hypothetical protein GCWU000342_01347 [Shuttleworthia satelles DSM
           14600]
          Length = 532

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 97/460 (21%), Positives = 150/460 (32%), Gaps = 113/460 (24%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRS---EPIH--YRMRAEFHIW--H 53
             +     YE Q   K D++R +M   F     +IF      P H  YR + EF      
Sbjct: 92  GCSYQNLPYEDQRKLKEDQIRHLMQPLFGEGVDRIFEGVTASPAHQEYRNKMEFSFGDQT 151

Query: 54  DGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLR 101
            G  L   M  + +  + + +D     S  +  L            +     I  E  LR
Sbjct: 152 KGGQLALGMHKRGSFYDIVTVDQCRIISQDMRDLLRLTLDFFTERRLGFYHKICHEGYLR 211

Query: 102 AKLFQIDYLTSQSDQAIVTLIY-------------HRLLDDAWRECAI------RLRDAL 142
             L +    T      +VT                 + L   W++  +       L   L
Sbjct: 212 HLLVRRAQRTGMLMVDLVTSTDRVDREGRPFTEEEEKKLLGDWKQLLLSHNWSDELAGIL 271

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
           H +            T++   RD++ E +      L +     SF Q N+     + E V
Sbjct: 272 HTQNDSPADAIEDQGTELLYGRDFLTEEIL----GLRFDITPFSFFQTNSPGAEVLYETV 327

Query: 203 LAATKGIQG--------------------------------------------------- 211
                G +                                                    
Sbjct: 328 REFIGGDEKGRENIDLSTVLSLPEGADKEQEQSHSDGEAKKRDHFDGQEKNRNNLDCIKG 387

Query: 212 -DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +LY G G  + +LA     V+ VEI + +V AAR N   N ++N + +        
Sbjct: 388 KTVFDLYSGTGTIAQILAPAAGHVIGVEIVEEAVAAARANAKKNGLDNCEFIAGDV---- 443

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSL 328
                      LK ID    +   I +DPPR G+    +  +       ++YISC P SL
Sbjct: 444 -----------LKVIDDIEDKPDFIVLDPPRDGIHPKALDKIIDYGVESMIYISCKPTSL 492

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            RDL IL +  + + R+   D FP T H+EC  L+ R  S
Sbjct: 493 VRDLEILMARGYEVRRMRGVDMFPATGHVECIALIQRVKS 532


>gi|313667852|ref|YP_004048136.1| tRNA methyltransferase [Neisseria lactamica ST-640]
 gi|313005314|emb|CBN86747.1| putative tRNA methyltransferase [Neisseria lactamica 020-06]
          Length = 452

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 140/372 (37%), Gaps = 25/372 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDG-D 56
             +L       Q+A K   + + +        +           HYR RA F +  D   
Sbjct: 78  GCSLQHISPAAQVAFKQRMMEEQLERIGKVKPKQILLPIYGHVWHYRDRARFSVSLDKLC 137

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      ++T + + I   M     ++  +  +   ++      +     ++    S+ 
Sbjct: 138 RLKLGFQAKKTNDVVDISSCMLLPKPVSDKLSAIRGLLQDLAEEGSVARFAEFYRG-SEI 196

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLTVA 174
            ++ + +   L         +  D+  +  +Q+ L      ++    +    +   L   
Sbjct: 197 TVLNIAFKSKLRQNEENRIRQWFDSELSDGWQVWLQIEGGVSQPFYPKTDKTLKYTLPEF 256

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G  + +R     FTQ N   N  M+  V+      +G+ + +L+CG GNFSL +A+    
Sbjct: 257 GIEMPFR--PGDFTQINTDTNRLMVSRVVKMLDIRRGERIADLFCGLGNFSLPMAKSGAD 314

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E A+  V  AR N   N  +          +F  A      F+  +       RF 
Sbjct: 315 VVGIEGAENLVRRARQNARLNGCDR-------QTDFIAA----NLFDCTEKTVASWERFD 363

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
            + +DPPRSG  +    +   Y    I+Y+SCNP +L RD  +L    + + +  + + F
Sbjct: 364 KMLIDPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYMLSQAGIMNMF 423

Query: 351 PYTRHMECGVLL 362
             T H E   + 
Sbjct: 424 AQTSHTESVAVF 435


>gi|255080342|ref|XP_002503751.1| predicted protein [Micromonas sp. RCC299]
 gi|226519018|gb|ACO65009.1| predicted protein [Micromonas sp. RCC299]
          Length = 512

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 182/456 (39%), Gaps = 94/456 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIH-YRMRAEFHIWHD-GD 56
           S T   D Y + LA+K  R+R++           ++++ S     YR R  F I  D G 
Sbjct: 58  SDTSTNDAYLELLADKTKRVRELFHGGGFIPARGVEVYASPKTRGYRSRCRFAIARDDGG 117

Query: 57  DLYHIMFDQQTKERMRID-----------YFMPGSLLINALMIEMMATIRLEP------L 99
            L + +F+    E + +             F   S  I  +M  ++  +           
Sbjct: 118 RLRYALFENG--EVVMLGDDDADEDGDTDVFPWASEPIARVMPVLLELLNDADGSPNARA 175

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIY----------------HRLLDDAWRECAIRLRDALH 143
           L   L  + +L S+  + +VTL                    + D  W + A  L  +L 
Sbjct: 176 LTTGLSAVGFLASRGGEVVVTLWNRMTDNAGDTNTAGDANTAIGDAEWNDDANGLLSSLR 235

Query: 144 ARKYQIQLIGRANKTKICL-DRDYVDERLTVA---------------------------- 174
           +      +  R  KT +     ++V E +TV                             
Sbjct: 236 SVGVTGVVTRRRRKTLVASNGVNHVWEPMTVPGDIPGDIEIIAAVPGDIPGDVGTGTTRS 295

Query: 175 -GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ------------------GDLLE 215
             R L Y+Q+E +F+ PN  +      W+  A + I                     LLE
Sbjct: 296 QSRHLRYKQVEGAFSNPNGDVAEVTARWLHDACEDILLARNKKGLGLGSTPLSTLPWLLE 355

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           LYCGNGN ++ L+  F RV AVEI    V AA  N A N V N  +  + ++ F +A   
Sbjct: 356 LYCGNGNHAVSLSPRFGRVTAVEIEPRLVAAANENFAVNGVANATVTALPAEVFARARTG 415

Query: 276 EREFNRLKDIDI-----HSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCR 330
                 L   D+      ++R  T+ VDPPR+GLD+ T+ +V  +  +LY++C+  SL R
Sbjct: 416 TGSRGLLDGDDVDQLLADAWRDGTVLVDPPRAGLDEDTLALVAGFGSVLYVACDCASLAR 475

Query: 331 DLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           DL   L  TH + R+ALFD FP +R  E  V L  K
Sbjct: 476 DLKSTLGKTHEVRRMALFDHFPGSRFCEVVVWLEAK 511


>gi|219130362|ref|XP_002185336.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403251|gb|EEC43205.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 378

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 138/379 (36%), Gaps = 70/379 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDD 57
              L     E Q   K   +++ +  + + ++ +       +   YR +   H       
Sbjct: 54  GCQLQHVSIESQRRWKTTLVQEGLAQYGLTDVTVAPTLGTDQTYGYRSKLTPHYDAPAKQ 113

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                    +++ + ++     +  INA   +    +  +P  R K   + +    +D  
Sbjct: 114 PI-GFQKMTSRKIINVETCPIATPAINAKYQQTRQELMSQPSKRKKGATLLFRQGNADDD 172

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
            V   + +                                             LT   R 
Sbjct: 173 YVETNHQQP--------------------------------------------LTTTVRG 188

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNFSLVLARHF 231
           L +  +  +F Q N  +   M+E VLA   G   +      L + YCG+G F++  A  F
Sbjct: 189 LNFTYLAGNFFQNNYYVLPLMVEHVLARAVGDDHEQPTMTHLADCYCGSGLFAIAAAPSF 248

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ +EI   +V  A+ N   N +++ + +  SS+         R+F R          
Sbjct: 249 ATVVGIEINDKAVREAQANAERNGIDHCQFLAASSENI---FAEIRDFPR---------D 296

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFD 348
              + +DPPR G     +  +   A   I+Y+SC+P +  RD   I++  + I  +  FD
Sbjct: 297 TTVVVLDPPRKGCSVEFLSQLYDFAPRRIVYMSCDPTTQARDAQGIVAAGYRITSVQPFD 356

Query: 349 QFPYTRHMECGVLLVRKPS 367
            FP TRH+EC ++L R P+
Sbjct: 357 LFPQTRHIECLMVLERSPA 375


>gi|258622549|ref|ZP_05717571.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM573]
 gi|258585249|gb|EEW09976.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM573]
          Length = 375

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 143/384 (37%), Gaps = 41/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S       Y QQ+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHQCAQPYSQQVENKDQQLRELIAPAMDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDY 109
            + D Q  + +           +  L            I     ++ +  L+  L     
Sbjct: 73  GIEDAQG-QPIPCVPCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSE 131

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDR 164
            + Q     V    H +L+   R     +     +      IQ +  A    + +I L  
Sbjct: 132 NSGQFMLRFVAR-SHTVLERIERNLPTLITAFPTIEVVSVNIQPVHMARLEGEEEIFLTE 190

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
               + L      +       SF Q N  +   +     A  + I    + +L+CG G F
Sbjct: 191 ---TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREITPTQMWDLFCGVGGF 247

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E     
Sbjct: 248 ALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---- 303

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTI 341
                      + V+PPR GL       ++A    HILY SCNP ++ +D++ LS+ + +
Sbjct: 304 -----------VLVNPPRRGLGSELTAQLEALVPKHILYSSCNPQTMVKDIAELSS-YQM 351

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
            R+  FD FP+T H E   LLVRK
Sbjct: 352 IRVQWFDMFPHTDHAEVLTLLVRK 375


>gi|187735352|ref|YP_001877464.1| RNA methyltransferase, TrmA family [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425404|gb|ACD04683.1| RNA methyltransferase, TrmA family [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 407

 Score =  203 bits (516), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 74/375 (19%), Positives = 134/375 (35%), Gaps = 72/375 (19%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRA--EFHIWHD 54
            G       Y++QL  K  ++  ++          N  +      HYR +    F    +
Sbjct: 91  GGCQYQHFSYDRQLLWKTRQVADLLRLQAGLELPVNPAVASPRQYHYRSKITPHFDRPKE 150

Query: 55  GDDLYHIMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           G           ++   + +         IN             PL R  ++Q       
Sbjct: 151 GGKPAIGFLKAGSRRDVVDVPQCPIAMECINE----------ALPLARKSVYQ------- 193

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
                                      A   ++    L+  +  T I  +     ER+  
Sbjct: 194 --------------------------AAARFKRGATILLRASEGTVITNNNAVACERVG- 226

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFD 232
               L +  +   F Q N  I     ++V   A+   +  L++ YCG+G F+L LA+ F 
Sbjct: 227 ---DLEFHFLAGDFFQNNPFILPLFTDYVAQQASMDGEEFLVDAYCGSGLFALSLAKKFK 283

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +VL VE+++ S + AR N  +N + + + +   +      +    E              
Sbjct: 284 KVLGVEVSETSADWARSNARSNGIEHAEFLAADAGAIFARVDFPAE-------------K 330

Query: 293 KTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             + +DPPR G     +  + A+    ++Y+SCNP +  RDL+      + +  +  FD 
Sbjct: 331 TAVVIDPPRKGCSAEFLAQLFAFGPGKVVYVSCNPATQIRDLAEFDKAGYFVTAVQPFDL 390

Query: 350 FPYTRHMECGVLLVR 364
           FP T+H+EC V L +
Sbjct: 391 FPQTKHLECVVTLKK 405


>gi|82776062|ref|YP_402409.1| 23S rRNA methyluridine methyltransferase [Shigella dysenteriae
           Sd197]
 gi|309786469|ref|ZP_07681093.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae
           1617]
 gi|123563144|sp|Q32ID7|RUMB_SHIDS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|81240210|gb|ABB60920.1| putative enzyme [Shigella dysenteriae Sd197]
 gi|308925657|gb|EFP71140.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shigella dysenteriae
           1617]
          Length = 375

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 135/379 (35%), Gaps = 39/379 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDTKLAQLRKALPWLHEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --HQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDWVRQLPVTHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A            
Sbjct: 249 LHCATPDMQLTGIEIAPEAIACAKQSAAELGLTCLQFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +       I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPELVLVNPPRRGIGKPLCDYLSTMAPCFIIYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVL 361
           R+ LFD FP+T H E   L
Sbjct: 353 RVQLFDMFPHTAHYEVLTL 371


>gi|317484523|ref|ZP_07943432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bilophila wadsworthia
           3_1_6]
 gi|316924241|gb|EFV45418.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bilophila wadsworthia
           3_1_6]
          Length = 449

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 137/378 (36%), Gaps = 31/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSE-PIHYRMRAEFHIWHDGD 56
             +     Y +QLA K   +   +         P L I  S     YR + EF     GD
Sbjct: 87  GCSWQSLAYGRQLAWKERIVHDALERVGKVACPPMLPILPSPSEWGYRNKMEFAFGVSGD 146

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
               +   ++    +     + G LL   L + ++  +R+            +L  +   
Sbjct: 147 GGKALGLRERGSRNI---VGVTGCLLQRPLTMRVLEAVRMLSNGAFHDLDGRFLVVREPN 203

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK---TKICLDRD--YVDERL 171
           A    +   +      E   R  +AL A   ++     + +   + +       Y D RL
Sbjct: 204 AGGCFVELIVGAGGSLEAGERFAEALRAETPEVTGFALSERLAPSDVAYGERALYADGRL 263

Query: 172 TVAGRTLIYRQIENSFTQPNA---GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
                 +  +   N+F Q N     +         A  +     L ++Y G G+  L + 
Sbjct: 264 EERIGDVRLQMGHNAFFQVNTPAAELLYAEAARFAALEELPDPVLWDVYGGVGSIGLYMG 323

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R+  RV+ +E    +V  AR N  A      K+ +  +K     + +             
Sbjct: 324 RNA-RVVGIEEMPGAVRYARGNAKALGRKAYKVEQGDAKSVLGRLVKL------------ 370

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
             +   + VDPPR+G+D      +   A   ++Y+SCNP +L RD++ L+    ++    
Sbjct: 371 GPKPDVVVVDPPRAGIDAKVAQQLAEAAPLRLIYVSCNPATLARDVARLAPAFRLKAARP 430

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP T H+E   LL R
Sbjct: 431 VDLFPQTPHVETVALLER 448


>gi|299530634|ref|ZP_07044050.1| 23S rRNA 5-methyluridine methyltransferase [Comamonas testosteroni
           S44]
 gi|298721378|gb|EFI62319.1| 23S rRNA 5-methyluridine methyltransferase [Comamonas testosteroni
           S44]
          Length = 499

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 136/405 (33%), Gaps = 51/405 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              +       Q+A K   L   +        +            YR R+   + +    
Sbjct: 103 GCKMQHLHVAAQVAVKQRVLEDNLWHLAKVKPETLLRPIEGPAWGYRFRSRLSVRYVAKK 162

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     +++++    ++        ++A+++ M A I      R    QI+       
Sbjct: 163 GKVLVGFHERKSRYIADMEVCKILPPHVDAMLMPMRALIASMDA-RETCPQIEVACGDHV 221

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R L+        RLRD    +  Q  L  +   T   ++         +  
Sbjct: 222 TALVL----RHLEPLSDADKQRLRDFAAEQNVQWWLQPKGPDTVHLMEEGGTQLSYGLPD 277

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     V
Sbjct: 278 FGITMPFKPTDFTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFTLPIATMAREV 337

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E ++  V+ +  N AAN+    +  +++S  F         F     + I       
Sbjct: 338 LGIEGSETLVKRSHENYAANNATRSEDDKLASTSFV----ARNLFEMTPAMLIADGNSDK 393

Query: 295 IFVDPPRSGLDDATVGMV---------------------------------QAYPHILYI 321
             VDPPR G    +  +                                  Q    I+Y+
Sbjct: 394 WLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFPKRIVYV 453

Query: 322 SCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP +L RD  +L     +      + + FP+T H+E   +  R
Sbjct: 454 SCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 498


>gi|300718123|ref|YP_003742926.1| 23S rRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661]
 gi|299063959|emb|CAX61079.1| 23S rRNA (Uracil-5-)-methyltransferase [Erwinia billingiae Eb661]
          Length = 438

 Score =  202 bits (515), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 141/361 (39%), Gaps = 30/361 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDG--DDLYHIMFDQQT 67
           Q + K   L +++        +   I   E   YR RA   + +      L        +
Sbjct: 100 QQSSKAQALSRLLSQQTGQPAEVDTILSGEAYGYRRRARLGLSYQPRSKTLQMGFRKAGS 159

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + +         +NAL+  +   +     +   L  I+ + + +   +V     R L
Sbjct: 160 NDLVSLTQCPILKPELNALIAPLHQVLSTLHAVST-LGHIELVLADNGPLLVL----RHL 214

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           +    E   +L    H  K  + L   ++  +         E        L        F
Sbjct: 215 EPLIAEDREKLEQFSHKHKVALYLAAESDTLEQVNG-----EMPFYRIHDLTLTFSPRDF 269

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N  +N  M+   LA       D +L+L+CG GNF+L + +    V  VE        
Sbjct: 270 IQVNGALNEQMVSQALAWLDLQPEDRVLDLFCGMGNFTLPVGKVVKNVTGVEGVAALAAK 329

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
             YN A N++NNV   + + +E             +      +  F  + +DP R+G   
Sbjct: 330 GGYNAALNNLNNVSFFQHNLEE------------DVTRQPWAAEGFNKVLLDPARAGAAG 377

Query: 307 ATVGMVQAYP-HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               +++  P  ++Y+SCNP +L RD  S+L++ + +ER+ L D FP+T H+E  VL  R
Sbjct: 378 VMDHIIKLAPERVVYVSCNPTTLARDSQSLLTSGYQLERITLLDMFPHTGHVESMVLFSR 437

Query: 365 K 365
           K
Sbjct: 438 K 438


>gi|157107434|ref|XP_001649776.1| RNA m5u methyltransferase [Aedes aegypti]
 gi|108884062|gb|EAT48287.1| RNA m5u methyltransferase [Aedes aegypti]
          Length = 625

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 155/422 (36%), Gaps = 72/422 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPI--H 42
            YE QL +K   +R +++                              L+  R  P    
Sbjct: 176 SYEDQLVQKQSEMRNVLIKLGKEIWKTCPALRPYVEEQRKLHDGLPCKLERIRKSPQTDG 235

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLI----NALMIEMMATIRLEP 98
           YR + EF I  D      + F   +     +D   P +L          ++         
Sbjct: 236 YRNKCEFSIGKDDQGEIRVGFRVGSYSNGFLDVESPQNLKNVSDKMKDTVKFYEEFVRNS 295

Query: 99  LL----------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDA----WRECAIRLRDALHA 144
            L            +   +   +S  D  +V  I+ + L +     +++  +    +   
Sbjct: 296 KLDIYSPETYQGHFRQLTVRTSSSTGDVMVVIGIHPQSLTEEELAQFKDSIVEHFTSDKG 355

Query: 145 RKYQIQLI-------GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           ++  I  I         + +T   ++  + +  +      L +R    +F Q N      
Sbjct: 356 KEIGISSIYLEKIGKRESGQTVNPVEHLHGETHIVDVIHGLKFRISPLAFFQINTPSAEV 415

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  +      Q   +L++ CG G   L  A+H  +VL VE+   ++E A+YN   N +
Sbjct: 416 LYQCAIDLADATQQTSVLDICCGTGTIGLCFAKHCKQVLGVELIPQAIEDAKYNAELNKI 475

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           +N K+   ++ +   ++ R        + +I +       VDPPR+GL   ++  ++   
Sbjct: 476 DNCKLYAGNADDLITSLIR--------NANIQAGENLVAIVDPPRAGLHVRSITQLRNAR 527

Query: 317 ---HILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHMECGVLLVR 364
               ++Y+SC+P+S  ++   L          T   +++    D FP+T H+E  +L  R
Sbjct: 528 GLNRLIYVSCSPNSAVKNWVDLMRPCSKAMRGTPFVLKKAIPVDLFPHTPHVELVLLFER 587

Query: 365 KP 366
           +P
Sbjct: 588 EP 589


>gi|238753463|ref|ZP_04614826.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia ruckeri ATCC
           29473]
 gi|238708416|gb|EEQ00771.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia ruckeri ATCC
           29473]
          Length = 363

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 135/380 (35%), Gaps = 41/380 (10%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +   Y QQLA+K   L  ++    V   L         +R +A+  +    +     +  
Sbjct: 1   MEKSYSQQLADKQHHLESLLAGQPVAEWLTPVFGRESAFRNKAKMVVNGSVERPLLGLLQ 60

Query: 65  QQTKERMRIDYFM--PGS---------LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           +     + +      P S         L I    +      R    L+  L     ++  
Sbjct: 61  RDG-TAVDLSDCPLYPASFAPVFAILKLFIARAGLTPYNVARKRGELKFLLLTESTVSGD 119

Query: 114 SDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVD 168
                V     +L  +  A      +L   L      IQ +  A      +I L   +  
Sbjct: 120 MMLRFVLRSESKLAQIRHALSWLQQKLPQ-LRVISVNIQPVHMAILEGDQEILLTEQH-- 176

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVL 227
             L      +       SF Q N  +   +        +G+  G + +L+CG G F L  
Sbjct: 177 -TLEEQFNQVPLYIRPQSFFQTNPQVAAALYATARDWVRGLNIGSMWDLFCGVGGFGLHC 235

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    R+  +EI+  ++  AR +     +  V    + S  F                  
Sbjct: 236 ATTETRLTGIEISAEAIACARQSAEKLGLKQVSFAALDSTHFATG--------------- 280

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
            +   + + V+PPR G+       +   A P ILY SC+ +++ +D++ L   + I+R+ 
Sbjct: 281 EAEVPELVLVNPPRRGISAELCCYLSQMAPPFILYSSCHAETMAQDIAALPD-YRIQRVQ 339

Query: 346 LFDQFPYTRHMECGVLLVRK 365
           LFD FP+T H E   LLVR+
Sbjct: 340 LFDMFPHTSHYEVLTLLVRR 359


>gi|296129134|ref|YP_003636384.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas flavigena
           DSM 20109]
 gi|296020949|gb|ADG74185.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Cellulomonas flavigena
           DSM 20109]
          Length = 374

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 138/378 (36%), Gaps = 32/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML-AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S TLL   Y +QLA +   +R ++     V  L    S    +R +A+  +    +    
Sbjct: 13  SCTLLAQPYPEQLAAQERHVRAVLGDPPGVTWLPTVTSAAAGFRNKAKMVVAGTVEAPTL 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL------RAKLFQIDYLTSQS 114
            + D      + +         ++A    +   +    L       R    +   +T   
Sbjct: 73  GILDGHGHG-VDLQGCPLYPPAVSAAFSPLADFVTRARLTPYDVPTRTGELKHVLVTGSP 131

Query: 115 DQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDE 169
           D  ++     R  +     R+   RL+  L         +  A+   +  +R+      E
Sbjct: 132 DGELMVRFVLRSTEALARIRKHLPRLQTDLPHLVVASVNVQPAHAAVLEGEREIPLTARE 191

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLA 228
            L +    L       SF Q N  +   +    LA           +LYCG G F+L LA
Sbjct: 192 TLRMHVNGLDLHLRPRSFFQTNTEVAAALYRQALAWADEAAVTSAWDLYCGVGGFALHLA 251

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R   +V+ VE +  +V +A        +   + V   +  F            L   D+ 
Sbjct: 252 RAGRQVVGVEASAEAVVSAELTARDAGLPGTRFVAGDATAFA-----------LDATDV- 299

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
                 + V+PPR GL +     ++A   P +LY SC+  SL RDL+ + +   + R  +
Sbjct: 300 ---PDLVVVNPPRRGLGEPLSRWLEASGVPRVLYSSCHAGSLARDLAHMPSL-RLVRAQV 355

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H E   LL R
Sbjct: 356 LDMFPHTAHHEVLTLLER 373


>gi|238789653|ref|ZP_04633436.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia frederiksenii
           ATCC 33641]
 gi|238722206|gb|EEQ13863.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia frederiksenii
           ATCC 33641]
          Length = 376

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 135/384 (35%), Gaps = 39/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K   L  ++    V   L+        +R +A+  +    +    
Sbjct: 13  SCQWLDKPYPQQLADKQHHLESLLFGHAVAQWLEPVFGRESAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        D           F    + I    +      R    L+  L      
Sbjct: 73  GMLHRDGSAVDLCDCPLYPASFAPVFAVLKIFIARAGLTPYNVARKRGELKFLLLTESTY 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           + +     V     +L  L  A      +L   L      IQ +  A    + +I L   
Sbjct: 133 SGELMLRFVLRSEAKLAQLRAALPWLQQQLPQ-LAVISANIQPVHMAILEGEQEIALTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +  D + +L+CG G F 
Sbjct: 191 --QQALPELFNQVPLFIRPQSFFQTNPQVAASLYATARQWVRELNIDSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EI+  ++  AR +     + NV    + S  F  A            
Sbjct: 249 LHCADTETQLTGIEISTEAIACARQSADQLGLKNVNFAALDSTRFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +   + + V+PPR G+       +   A   ILY SCN +++ +D++ L+  + IE
Sbjct: 297 ---EAQVPQLVLVNPPRRGIGTELCRYLSQMAPEFILYSSCNAETMAKDIAQLAD-YRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366
           R+ LFD FP+T H E   LL   P
Sbjct: 353 RVQLFDMFPHTSHYEVLTLLTLSP 376


>gi|332529099|ref|ZP_08405063.1| 23S rRNA m(5)U1939 methyltransferase [Hylemonella gracilis ATCC
           19624]
 gi|332041322|gb|EGI77684.1| 23S rRNA m(5)U1939 methyltransferase [Hylemonella gracilis ATCC
           19624]
          Length = 493

 Score =  202 bits (514), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 137/378 (36%), Gaps = 34/378 (8%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L   +        ++           YR RA   + H     ++     ++
Sbjct: 119 AQVAVKQRVLEDNLWHLGKVRPEVLLRPIEGPAWGYRYRARLSVRHVRKKGEVLVGFHER 178

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA-IVTLIYH 124
           +++    I         ++A+++ + A I     +     QI+     +    +VT +  
Sbjct: 179 KSRYVADIKTCAVLPPHVSAMLMPLRALIASMEAIETC-PQIELACGFNLAGELVTALVL 237

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD----ERLTVAGRTLIY 180
           R L+   +    +LR    A   Q  L  +   T   LD           L   G  + +
Sbjct: 238 RHLEPLSQGDLAKLRAFASAHGVQWWLQPKGPDTVHRLDEQDGTVPLAYGLPEFGIEMPF 297

Query: 181 RQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           +     FTQ N  IN  ++   L          +++ +CG GNF+L LA     VL +E 
Sbjct: 298 K--PTDFTQVNPHINRVLVTRALRLLDVQSSERVIDWFCGLGNFTLPLATQAREVLGIEG 355

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-FKTIFVD 298
           ++  V  +R N +     N +                R    L   D+ SY   +   VD
Sbjct: 356 SEALVARSRENAS----YNAQRRAAPWTPLAPTRFEARNLFELAPADLLSYGVAQKWLVD 411

Query: 299 PPRSG---LDDATVGMVQA---------YPHILYISCNPDSLCRDLSIL--STTHTIERL 344
           PPR G   L  A    VQA            I+Y+SCNP +L RD  +L     +     
Sbjct: 412 PPREGAFALAKALADFVQAPESAPGYVLPRRIVYVSCNPATLARDAGLLVHQAGYRCTAA 471

Query: 345 ALFDQFPYTRHMECGVLL 362
            + + FP+T H+E   + 
Sbjct: 472 GVVNMFPHTAHVESIAVF 489


>gi|330752426|emb|CBL87377.1| 23S rRNA methyltransferas [uncultured Flavobacteria bacterium]
          Length = 469

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 73/401 (18%), Positives = 138/401 (34%), Gaps = 52/401 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIW---- 52
                   Y  QL  K   ++Q+        ++ +       E   +R + EF       
Sbjct: 84  GCKWQNMNYNAQLHHKDIEIKQIFKKIGNIQIKKYLPIVECKEHYGFRNKMEFSFSSKKW 143

Query: 53  --------------HDGDDLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
                          D    +   M+D+     + I+Y       +N +  E+       
Sbjct: 144 LTEKEISSKKKIKNRDAIGFHISGMWDK----IVDINYCHLQKDYVNEIRNEIKKYCIDN 199

Query: 98  PLL-------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
             +          L  + + T+   + ++   ++             +R         + 
Sbjct: 200 NYVFFNHSKKEGFLRTLTFRTTSLGEMMLIFHFYYFDKQKIEMLLNFVRTRFKNISSLLY 259

Query: 151 LIGRANKTKIC---LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           +I       I    + + + +  +      L ++    SF Q N      +    L   K
Sbjct: 260 VINNKENDSIYDLSIFKYHGEYYIKEEIGKLSFKISPKSFFQTNLYQTSVLYNKSLEILK 319

Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             + D++ +LYCG G  S  +A++   V+ +EI   +++ A  +   N + N+   +   
Sbjct: 320 IKKTDIVYDLYCGLGTISQYVAQYCKIVVGIEIIDEAIQLAIESSKINGLKNIYFEKEDI 379

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCN 324
              ++            D+     +   I +DPPR GL    + ++       ILYISCN
Sbjct: 380 NNISKL-----------DLLRKYGKPNAIILDPPRQGLTKKIIKVLLEIKSEKILYISCN 428

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           P +  RDL IL + + +      D FP T H+E  VLL  K
Sbjct: 429 PSTQARDLEILCSEYEVTLSQAIDMFPQTSHVENIVLLTNK 469


>gi|121610011|ref|YP_997818.1| 23S rRNA 5-methyluridine methyltransferase [Verminephrobacter
           eiseniae EF01-2]
 gi|254766922|sp|A1WME3|RUMA_VEREI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|121554651|gb|ABM58800.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Verminephrobacter
           eiseniae EF01-2]
          Length = 486

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/383 (19%), Positives = 128/383 (33%), Gaps = 40/383 (10%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQ 66
           Q+A K   L   +         +           YR RA   + H      +     +++
Sbjct: 112 QVAVKQRVLEDNLWHLGRVKPAMVLRPIEGPAWGYRYRARLSVRHVIKKGVVLVGFHERK 171

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           ++    +           AL++ + + I           QI+     S  A+V  + H  
Sbjct: 172 SRYVADMAQCPVLPPHAAALLMPLRSLIAALDA-HDSCPQIELACGDSVTALV--LRHLQ 228

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
                    +R   A H  ++ +Q  G      +    + +   L   G T+ ++     
Sbjct: 229 PLSVGDHARLRAFAAEHGVQWWLQPRGPDTVQPLDEGGEQLSYALPDFGITMPFK--PTD 286

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ N  IN  ++   L        + +++ +CG GNF+L LA     VL VE     V 
Sbjct: 287 FTQVNPHINRVLVARALRLLAVRPDERVIDWFCGLGNFTLPLATQARAVLGVEGNAALVA 346

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N   N         +++ +F         F     + +         VDPPR G  
Sbjct: 347 RARANHGLNQALAQNHRVLAATDFV----ACNLFAMTPGMLLGHGAADKWLVDPPREGAL 402

Query: 306 DATVGMVQ----------------------AYPHILYISCNPDSLCRDLSILS--TTHTI 341
                +                            I+Y+SCNP +L RD ++L     +  
Sbjct: 403 ALVKALADIEQSRRGAQGATALPAGAEDWVPPRRIVYVSCNPATLARDAALLVHLAGYQC 462

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               + + FP+T H+E   +  R
Sbjct: 463 AAAGMVNMFPHTAHVESIAVFER 485


>gi|229522457|ref|ZP_04411873.1| RNA methyltransferase TrmA family [Vibrio cholerae TM 11079-80]
 gi|229340442|gb|EEO05448.1| RNA methyltransferase TrmA family [Vibrio cholerae TM 11079-80]
          Length = 375

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 149/382 (39%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y +Q+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPTLIAAFPTIEVISVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMAKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LLVRK
Sbjct: 354 VQWFDMFPHTNHAEVLTLLVRK 375


>gi|330504041|ref|YP_004380910.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas mendocina
           NK-01]
 gi|328918327|gb|AEB59158.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas mendocina
           NK-01]
          Length = 452

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 79/372 (21%), Positives = 131/372 (35%), Gaps = 30/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGD- 56
              L    +  QLA K   L + +                   + YR RA   +  D   
Sbjct: 99  GCNLQHMPHADQLALKQRTLAEQLSRLGGIQPDEWATPLTGPELGYRRRARVAVRWDAKA 158

Query: 57  -DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L      + +++ + ID  +     +  +   + A +R     +A +  ++  +  ++
Sbjct: 159 RQLQVGFRAEASQDIVAIDECLVLVQPLQPIFNALPALLRSLEKPQA-VGHVELFSGTAE 217

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             ++     R           RLR      + Q+ L G         D    +    +  
Sbjct: 218 SVLL-----RHTAALAETDLNRLRVFCSEHRAQLWLQGEGQPQP---DDPCAELGFELQR 269

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             L        F Q N  +N  M+   L       +  +L+L+CG GNF+L LAR    V
Sbjct: 270 WQLQLAYRPGDFVQVNGLVNEAMVAQALDWLAVKPEERVLDLFCGLGNFALPLARQAAEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  V  A  N   N + N    R                N L         F  
Sbjct: 330 VAVEGVEAMVLRAAANARNNGLGNAHFYRAD------------LSNPLASETWARGGFPA 377

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +   GM +     ++Y+SCNP +L RD + L    + + R  + D F  
Sbjct: 378 VLLDPPRDGALEVVRGMSELGARRLVYVSCNPTTLARDAAELVRQGYRLRRAGILDMFAQ 437

Query: 353 TRHMECGVLLVR 364
           T H+E   L  +
Sbjct: 438 TAHVEAMALFEK 449


>gi|257468239|ref|ZP_05632335.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium ulcerans ATCC
           49185]
 gi|317062521|ref|ZP_07927006.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium ulcerans ATCC
           49185]
 gi|313688197|gb|EFS25032.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium ulcerans ATCC
           49185]
          Length = 287

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 129/291 (44%), Gaps = 24/291 (8%)

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
           ++N   + +      + +LR  + + +   S+++  +V +I    ++  +++  + L++ 
Sbjct: 13  ILNREKVSVYDENEHKGILRNVMVRTN---SKNEAMLVLIINAVKVEKRYKDILMELKNK 69

Query: 142 LHARKYQIQLIGRANKTKICLDR----DYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           +   K  I +     +T + L       + ++ +T     + +     SF Q N      
Sbjct: 70  VEEIK-SIYISLNPKRTNVALGDKNIFIWGEKTITEEIDGINFNISPLSFFQINLPQTKK 128

Query: 198 MLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +    +   + ++  ++++ Y G G  +++L++   +V A+E+ + +          N +
Sbjct: 129 LYNTAVNYFEDLENKNVVDAYSGTGTLAMILSKKAKKVFAIELVQSATNDGIKTAKENKI 188

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--A 314
            N++ +  + ++            RL ++     +   I  DPPR G+D++++  V    
Sbjct: 189 ENIEFINGAVED------------RLPELIKKGEKVDAIIFDPPRKGIDESSLLKVAESN 236

Query: 315 YPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
              I+YISCNP +  RD  ILS   +T+E++   D FP T H E     ++
Sbjct: 237 IKEIVYISCNPSTFARDAEILSRQGYTLEKVQPVDMFPGTAHTEVVGRFIK 287


>gi|238762100|ref|ZP_04623073.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia kristensenii
           ATCC 33638]
 gi|238699828|gb|EEP92572.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia kristensenii
           ATCC 33638]
          Length = 375

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 142/383 (37%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K   L  ++    V   L     +   +R +A+  +    +    
Sbjct: 13  SCQWLDKPYPQQLADKQHHLENLLSGHAVTQWLSPAFGQESAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M  +     +      +      + A++   +A   L P         L+  L      
Sbjct: 73  GMLHRDGTPVDLCECPLYPVSFAPVFAVLKSFIARAGLTPYNVARKRGELKFLLLTESTY 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
             +     V     +L  L  A      +L   L      IQ +  A    + +I L   
Sbjct: 133 RGELMLRFVLRSSTKLAQLQAALPWLQQQLPQ-LAVISANIQPVHMAILEGEQEIPLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L  +   +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQTLPESFNQVPLFIRPQSFFQTNPQVAASLYATARQWVRELNINSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EI+  ++  AR + +   + NV    + S  F  A            
Sbjct: 249 LHCADPETQLTGIEISAEAIACARQSASQLGLKNVNFAALDSTRFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +   + + V+PPR G+       +   A   ILY SCN +++ +D+++L+  + IE
Sbjct: 297 ---ETQVPQLVLVNPPRRGIGAELCEYLSQMAPEFILYSSCNAETMAKDINLLAD-YHIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+ LFD FP+T H E   LL+++
Sbjct: 353 RVQLFDMFPHTAHYEVLSLLIKR 375


>gi|123441809|ref|YP_001005793.1| 23S rRNA methyluridine methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|167012648|sp|A1JM74|RUMB_YERE8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|122088770|emb|CAL11576.1| putative RNA methyltransferase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 375

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 146/382 (38%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K + L  ++   +V   L     +   +R +A+  +    +    
Sbjct: 13  SCQWLDKPYPQQLADKQNHLENLLSDHRVTQWLSPLFGQESAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M  +     +      +      + A++   +A   L P         L+  L      
Sbjct: 73  GMLHRDGTPVDLCECPLYPTSFAPVFAVLKTFIARAGLTPYNVARKRGELKFLLLTESTY 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           + +     V     +L  L  A      +L   L      IQ +  A    + ++ L   
Sbjct: 133 SGELMLRFVLRSQTKLSQLQAALPWLQQQLPQ-LAVISVNIQPVHMAILEGEQEMPLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + ++ D + +L+CG G F 
Sbjct: 191 --QQALPEIFNQVPLFIRPQSFFQTNPQVAASLYATARQWVRELKIDSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    R+  +EI+  ++  AR +     + NV    + S +F  A            
Sbjct: 249 LHCADTETRLTGIEISAEAIACARQSADQLGLKNVTFAALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
               +   + + V+PPR G+       + Q  P  ILY SCN +++ +D+S+L+  + IE
Sbjct: 297 ---ETQVPQLVLVNPPRRGIGAQLCEYLSQMAPQFILYSSCNAETMAKDISLLAD-YRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LL++
Sbjct: 353 RVQLFDMFPHTAHYEVLSLLIK 374


>gi|153004375|ref|YP_001378700.1| (Uracil-5)-methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152027948|gb|ABS25716.1| (Uracil-5)-methyltransferase [Anaeromyxobacter sp. Fw109-5]
          Length = 482

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 147/372 (39%), Gaps = 27/372 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
               L   Y  QLA K   +R+ +      +         +    P+ YR RA+FH  HD
Sbjct: 126 GCEWLHVDYAAQLAAKERTVREALRRIARVDPGAYDARPIVGSPAPLRYRARAKFH--HD 183

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
                 + F +++   +R+         ++AL   +   +     L  +   +++   + 
Sbjct: 184 RASGRLVYFRRRSHAPVRLRECHLLDERLDALREAVGPALGRAG-LAPREVALEWSGHEG 242

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-RLTV 173
             A   L+    +  A R  A  L   + A    +  +       + +    +   R+  
Sbjct: 243 RGAAWLLLP--AITPAVRARAEALLCEVPALAGAV--LQPEGGAPVLVGSPVLRHARVPG 298

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
              + + R   + F Q N G N  ++   L        D+LEL+CG GNF+  LA     
Sbjct: 299 DAASGVQRSRPDVFQQANRGANALLVRAALDLLAPDGLDVLELHCGAGNFTGPLAARARW 358

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V AVE+  P++E AR ++A     NV+     + +   A  RE            + RF 
Sbjct: 359 VAAVEVQGPALELARADLA--GAGNVRFFAGDALKLALAFAREG--------GPSARRFG 408

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFP 351
              +DPPR G       + +   P  +Y+SC+P +  RD+ + + T   +E +   D FP
Sbjct: 409 AALLDPPREGAKGIGPALRELGLPRTVYVSCDPATFARDVRACVETGFRLEAVQPVDMFP 468

Query: 352 YTRHMECGVLLV 363
            T H+E   LLV
Sbjct: 469 QTHHVEAVALLV 480


>gi|319792730|ref|YP_004154370.1| RNA methyltransferase, trma family [Variovorax paradoxus EPS]
 gi|315595193|gb|ADU36259.1| RNA methyltransferase, TrmA family [Variovorax paradoxus EPS]
          Length = 478

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 129/379 (34%), Gaps = 35/379 (9%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L   +        +           HYR RA   + H      +     ++
Sbjct: 104 AQVAVKQRALEDNLWHLGKVRPENVLRPLEGPAWHYRYRARLSVRHVVKKGTVLIGFHER 163

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV---TLI 122
           +++    +         ++ +++ + A I      R    QI+     +  +       +
Sbjct: 164 KSRYLADMQVCPVLPKQVSEMLMPLRALIGSMDA-RETCPQIELACGDAPDSTALGTIAL 222

Query: 123 YHRLLDDAWRECAIRLRD-ALHARKYQIQLIGRANKTKICL--DRDYVDERLTVAGRTLI 179
             R L+   R    RL+  A      Q  L  +  +T   L      +  RL   G T+ 
Sbjct: 223 VLRHLEPLSRADIDRLKAFAAQNEGVQWWLQAKGPETVKLLEEGGTPLAYRLPEFGVTMP 282

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           ++     FTQ N  IN  ++   L          +++ +CG GNF+L LA     VL +E
Sbjct: 283 FK--PTDFTQVNPHINRALVGKALRLLDVQSDERVIDWFCGLGNFTLPLASRAREVLGIE 340

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            +   V  A  N+  N         +S   F         F     + +         VD
Sbjct: 341 GSDTLVARATDNLKKNEPATSARRALSPTTFV----ARNLFEMTPAMLVADGSADKWLVD 396

Query: 299 PPRSGLDDATVGMVQAY-------------PHILYISCNPDSLCRDLSIL--STTHTIER 343
           PPR G       M   +               I+Y+SCNP +L RD  +L     +    
Sbjct: 397 PPREGAFALAKAMADLHQQPELRTDGWTPPKRIVYVSCNPSTLARDAGLLVHQAGYRCTF 456

Query: 344 LALFDQFPYTRHMECGVLL 362
             + + FP+T H+E   + 
Sbjct: 457 AGVVNMFPHTAHVESIAVF 475


>gi|309806433|ref|ZP_07700441.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167186|gb|EFO69357.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
           iners LactinV 03V1-b]
          Length = 306

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 60/322 (18%), Positives = 124/322 (38%), Gaps = 33/322 (10%)

Query: 62  MFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYL 110
           M+  ++++ + +      S            LI  + I +  +   +  ++  + +  + 
Sbjct: 1   MYAPKSQKIIDLPIMPTQSKNTQKIEFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHA 60

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYV 167
           T +    +VT+  +    D   E  I L + +            +   NKT   + ++Y+
Sbjct: 61  TDEIQVTLVTIGKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYI 120

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV 226
            E++        +     +F Q N      +    L   +     +L + Y G G   ++
Sbjct: 121 TEQILNK----KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGTLGIL 176

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
            +    +V+ +E    ++  A++N   N+V N + +  S ++    M+++          
Sbjct: 177 ASEKVKQVIGIESIPEAIADAQFNCRLNNVKNAEYINGSVEKILPQMQKD---------- 226

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERL 344
                   + VDPPR+GL+   V  +        +YISCNP +L RDL +LS  + +  +
Sbjct: 227 --GIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLI 284

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
              D  P T   E    LV + 
Sbjct: 285 QPVDMMPQTPRWEGIAKLVLRK 306


>gi|328353172|emb|CCA39570.1| hypothetical protein PP7435_Chr3-0612 [Pichia pastoris CBS 7435]
          Length = 546

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 152/394 (38%), Gaps = 50/394 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRA----E 48
           SG      +Y QQL  K D +      F          P++      P+ Y  R      
Sbjct: 169 SGCQYQPIEYAQQLLLKRDTIVNAYKFFAPILTASGKLPDMGSTVPSPLQYSYRTKLTPH 228

Query: 49  FHI-WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL--- 104
           F I      D     F   +K R     F P  + +N+ ++++   +    ++   L   
Sbjct: 229 FEIPRRKTQDFQKPSFGFGSKGR---PKFRPEIVDVNSSIVDIEECLIGTSIINTGLSNE 285

Query: 105 ---FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR-KYQIQLIGRANKTKI 160
              F+  Y   +    I+       + D   E     RD      K +++L   + + K 
Sbjct: 286 RKKFESTYNNYKRGATILLRENTTPVADPPVETGEGSRDGTGEISKAEVELPDGSKQLKT 345

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELY 217
           C+      + +T       ++     F Q N  I   ++++V   L      +  L++ Y
Sbjct: 346 CVTEP--RQIVTEIINGNKFQFSAGEFFQNNNSILPDIIKYVQDNLKLDPNGENYLVDAY 403

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG+G FS+  A    +V+ VEI+  SV+ A +N   N++ N + +   +++    ++  R
Sbjct: 404 CGSGLFSISCASSVKKVIGVEISADSVKFATHNAELNNIENCEFITGKAEKIFADIQLPR 463

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
           +               +I +DPPR G DD  +  +       I+YISCN  S  RDL   
Sbjct: 464 D-------------QTSIILDPPRKGCDDVFLTQLSEFKPKKIIYISCNVHSQARDLEYF 510

Query: 336 ----STT--HTIERLALFDQFPYTRHMECGVLLV 363
               S    + I+ +  FD FP T H+E   +L 
Sbjct: 511 INNTSNGFQYRIDSIRGFDFFPQTHHVEGVAVLS 544


>gi|254571419|ref|XP_002492819.1| tRNA methyltransferase [Pichia pastoris GS115]
 gi|238032617|emb|CAY70640.1| tRNA methyltransferase [Pichia pastoris GS115]
          Length = 572

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 152/394 (38%), Gaps = 50/394 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRA----E 48
           SG      +Y QQL  K D +      F          P++      P+ Y  R      
Sbjct: 195 SGCQYQPIEYAQQLLLKRDTIVNAYKFFAPILTASGKLPDMGSTVPSPLQYSYRTKLTPH 254

Query: 49  FHI-WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL--- 104
           F I      D     F   +K R     F P  + +N+ ++++   +    ++   L   
Sbjct: 255 FEIPRRKTQDFQKPSFGFGSKGR---PKFRPEIVDVNSSIVDIEECLIGTSIINTGLSNE 311

Query: 105 ---FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR-KYQIQLIGRANKTKI 160
              F+  Y   +    I+       + D   E     RD      K +++L   + + K 
Sbjct: 312 RKKFESTYNNYKRGATILLRENTTPVADPPVETGEGSRDGTGEISKAEVELPDGSKQLKT 371

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELY 217
           C+      + +T       ++     F Q N  I   ++++V   L      +  L++ Y
Sbjct: 372 CVTEP--RQIVTEIINGNKFQFSAGEFFQNNNSILPDIIKYVQDNLKLDPNGENYLVDAY 429

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG+G FS+  A    +V+ VEI+  SV+ A +N   N++ N + +   +++    ++  R
Sbjct: 430 CGSGLFSISCASSVKKVIGVEISADSVKFATHNAELNNIENCEFITGKAEKIFADIQLPR 489

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
           +               +I +DPPR G DD  +  +       I+YISCN  S  RDL   
Sbjct: 490 D-------------QTSIILDPPRKGCDDVFLTQLSEFKPKKIIYISCNVHSQARDLEYF 536

Query: 336 ----STT--HTIERLALFDQFPYTRHMECGVLLV 363
               S    + I+ +  FD FP T H+E   +L 
Sbjct: 537 INNTSNGFQYRIDSIRGFDFFPQTHHVEGVAVLS 570


>gi|332526108|ref|ZP_08402246.1| 23S rRNA m(5)U1939 methyltransferase [Rubrivivax benzoatilyticus
           JA2]
 gi|332109951|gb|EGJ10579.1| 23S rRNA m(5)U1939 methyltransferase [Rubrivivax benzoatilyticus
           JA2]
          Length = 473

 Score =  202 bits (513), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 131/370 (35%), Gaps = 33/370 (8%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L   +        +            YR RA   + +      +     ++
Sbjct: 93  AQVAVKQRVLEDNLWHLGKVKPERLLRPVHGPAWGYRWRARLSVRYVPKKGTVLVGFHER 152

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           +++    +         ++A++  +   +      R +L QI+      D+ +  ++ H 
Sbjct: 153 KSRYVADMLECPVLPAQVSAMLPALRELVGAMEQ-RDRLPQIELAAG--DEVVALVLRHL 209

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
               A     +R   A H  ++ +Q  G     ++      +   L   G T+ ++    
Sbjct: 210 EPLSAGDAARLRAFGAEHGVQWWLQPKGPETVHRLDDGGPQLSYSLPEYGVTMPFK--PT 267

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            FTQ N  IN  +++  +        + +++ +CG GNF+L LAR    V  +E ++  V
Sbjct: 268 DFTQVNPQINRVLVDRAVRLLDPKPHERVVDWFCGLGNFTLPLARRAAAVHGIEGSETLV 327

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + AR                +      +      F    D  + S       VDPPR G 
Sbjct: 328 QRAR-----------DNAAANGLAANTSFAARNLFEMSADELMTSGAADAWLVDPPREGA 376

Query: 305 DDATVGMVQA--------YPHILYISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTR 354
                 + +            I+Y+SCNP +L RD  ++            + + FP+T 
Sbjct: 377 FALAKSLAELRGREGWTPPRRIVYVSCNPATLARDAGLIVHLAGFRCVAAGVVNMFPHTA 436

Query: 355 HMECGVLLVR 364
           H+E   +  R
Sbjct: 437 HVESVAVFER 446


>gi|238794845|ref|ZP_04638445.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia intermedia
           ATCC 29909]
 gi|238725788|gb|EEQ17342.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia intermedia
           ATCC 29909]
          Length = 375

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 136/386 (35%), Gaps = 45/386 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K   L  ++ +  V   L         +R +A+  +    +    
Sbjct: 13  SCQWLDKPYPQQLADKQHHLESLLASHAVAQWLAPVSGRENAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCDCPLYPASFAPVFAVLKTFIGRAGLTPYNVARKRGELKFLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
              + +     V     +L  L  A      +L   L      IQ +  A    + ++ L
Sbjct: 130 STYSGELMLRFVLRSETKLAQLRAALPWLQQQLPQ-LAVISANIQPVHMAILEGEQEVPL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +        + +    + +L+CG G
Sbjct: 189 TE---QQALPELFNQVPLFIRPQSFFQTNPQVAASLYATARQWVRQLGISSMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EI+  ++  AR +     + NV    + S  F  A         
Sbjct: 246 GFGLHCASAETQLTGIEISAEAIACARQSAQQLGLQNVSFAALDSTCFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                  +   + + V+PPR G+       +   A   ILY SCN  ++ +D+S+L+  +
Sbjct: 297 ------ETQVPQLVLVNPPRRGIGAELCDYLAQMAPEFILYSSCNAQTMAKDISLLAD-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            IER+ LFD FP+T H E  VLL  +
Sbjct: 350 RIERVQLFDMFPHTAHYEVLVLLTLR 375


>gi|170039429|ref|XP_001847537.1| RNA m5u methyltransferase [Culex quinquefasciatus]
 gi|167863014|gb|EDS26397.1| RNA m5u methyltransferase [Culex quinquefasciatus]
          Length = 622

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 145/425 (34%), Gaps = 86/425 (20%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPI--H 42
            YE QL +K   +  ++  F                            L+  R  P    
Sbjct: 168 SYEDQLKQKQSEMHNVLKGFGDEVWKSCPTMRSYVEEMRKLNDGLPCKLEEIRGSPQVDG 227

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQT-----------KERMRIDYFMPGSLL-----INAL 86
           YR + EF I  DG     + F   +            +   I   M  ++      +   
Sbjct: 228 YRNKCEFSIGKDGQGEVRVGFRVGSYSNGFLEVESPDKLKHISEKMKSTVKLFEEFVQKS 287

Query: 87  MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR-----LRDA 141
             E+ +    +   R    +    T    Q +V +  H    +  +   +R        +
Sbjct: 288 EYEVYSPETYKGYFRQLTVRTSNATG---QVMVVIGIHPQELEEEKLSELRSSLVSWFTS 344

Query: 142 LHARKYQIQLI-----------GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
             A++  I  I             A+ T       ++ E +      L +R    +F Q 
Sbjct: 345 EKAKEIGISSIYFQTIEKFKSGQYAHPTTHLWGETHIIEEIH----GLKFRVSPQAFFQI 400

Query: 191 NAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N      + +  +  A    Q  +L++ CG G   L  A+H  +VL VEI   ++  A +
Sbjct: 401 NTPSAEILYQTAIDLAGTTKQTSILDICCGTGTIGLCFAKHCKQVLGVEIVAEAIADATH 460

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N + N K    ++ +   ++   R  N  KD D+         VDPPR+GL   ++
Sbjct: 461 NAKENGIENCKFYTGNADDLITSL--VRNANVQKDEDL------VAIVDPPRAGLHIRSI 512

Query: 310 GMVQAYP---HILYISCNPDSLCRDLSIL---------STTHTIERLALFDQFPYTRHME 357
             ++       ++Y+SC+P S  ++ + L               +R    D FP+T H E
Sbjct: 513 TQLRNARGLNRLIYVSCSPQSAVKNWADLMRPRSKVMRGGPFMPKRAIPVDLFPHTPHAE 572

Query: 358 CGVLL 362
             VL 
Sbjct: 573 LIVLF 577


>gi|302837995|ref|XP_002950556.1| hypothetical protein VOLCADRAFT_60616 [Volvox carteri f.
           nagariensis]
 gi|300264105|gb|EFJ48302.1| hypothetical protein VOLCADRAFT_60616 [Volvox carteri f.
           nagariensis]
          Length = 206

 Score =  202 bits (513), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 55/212 (25%), Positives = 82/212 (38%), Gaps = 24/212 (11%)

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE---WVLAATKGIQGDLLELYCG 219
              Y+ + L      L +R    SF Q N      + +          G    +L+LYCG
Sbjct: 1   GTPYIHDVLG----GLKFRISPGSFFQTNTRQAEVLYDVVRRAAGLRPGAVDTVLDLYCG 56

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L LA    RVL VE+ + ++E AR N A N ++NV+ +   +     A       
Sbjct: 57  TGTIGLSLAGECRRVLGVEVLESAIEDARANAALNAISNVEFLCADAPAAAAAASPTAV- 115

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST 337
                          + VDP R GL       +       ++Y+SCN  +  RDL  L  
Sbjct: 116 ----------TTPDVVIVDPARGGLTLDAASFLSRCGARRVVYVSCNVATQARDLDRLCN 165

Query: 338 T----HTIERLALFDQFPYTRHMECGVLLVRK 365
                  +  +   D FP+T H+E   +L RK
Sbjct: 166 GSGAPFRLVSVQPVDMFPHTDHVETVAVLDRK 197


>gi|319779692|ref|YP_004130605.1| RNA methyltransferase, TrmA family [Taylorella equigenitalis MCE9]
 gi|317109716|gb|ADU92462.1| RNA methyltransferase, TrmA family [Taylorella equigenitalis MCE9]
          Length = 439

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 144/381 (37%), Gaps = 35/381 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM---LAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDD 57
             ++       Q+A K   L          ++P  L        +YR RA   + +    
Sbjct: 75  GCSMQHIDPSTQVAVKQRTLEDNFKHIAKIKIPKVLPAIHGPYWNYRYRARLSVRYVRKK 134

Query: 58  LYHIMFDQQTKERMRID--YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              ++  ++ K R  +D       +  ++ L+  + A ++     + ++ QI+    + +
Sbjct: 135 EDVLVGFREKKGRYVVDMHTCPVLAKPVSDLLPRLRACLKELD-CKEEIPQIEVTVGE-E 192

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-NKTKIC--LDRDYVDERLT 172
             ++ L +   L  +      +L++  H  K       +  +  K    LD +  +    
Sbjct: 193 TVVLALRHMVPLSSS---DFAKLKEFAHEHKIVWWSQAKGLDSLKTLDPLDSEKNNLYYD 249

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
           +    L      + FTQ N  IN  M+   L   +  Q D + +L+CG GNF+L L+   
Sbjct: 250 LPQFGLRMYYEPSDFTQVNPFINRTMIRRALDLLEVHQNDRVADLFCGLGNFTLPLSTIA 309

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             V+ +E ++   + A      + + + VK   ++  E                      
Sbjct: 310 KEVVGIEGSESLTKRAMQGAQNHGLQDKVKFSTLNLFEVDSTWLEGL------------G 357

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIER 343
            F  + +DPPR G       +    P      I+Y+SCNP +L RD  +L  S  + +  
Sbjct: 358 AFDKMLLDPPRDGAFAVCKALTAMNPSLRPKRIVYVSCNPSTLARDADVLVNSGAYKLLG 417

Query: 344 LALFDQFPYTRHMECGVLLVR 364
             + + FP+T H+E   +  R
Sbjct: 418 AGVINMFPHTAHVESIAVFER 438


>gi|262041046|ref|ZP_06014265.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259041604|gb|EEW42656.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 375

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 140/382 (36%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L     QQLA+K+  LR ++ A  V    +        +R +A+  +    +    
Sbjct: 13  SCQWLERPVPQQLADKMADLRTLLAAIPVAAWGEPVSGPEAAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +     +      +      + A +   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLHRDGTPVDLTDCPLYPAEFAPVFATLKPFIARAGLTPYNVARKRGELKYLLLTASQQ 132

Query: 115 DQAIVTLIYHR-----LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
            + ++  +         L  A      +L   L      IQ +  A    + +I      
Sbjct: 133 GEMMLRFVLRSEAKVAQLRAALPWLQAQLPQ-LSVITANIQPVHMAIMEGEQEIFFTE-- 189

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + +    + +L+CG G F L
Sbjct: 190 -QQALGEVFNGVPLWIRPQSFFQTNPAVASRLYATARDWVRALPVQHMWDLFCGVGGFGL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    R+  +EIA  ++  AR + A   ++N+    + S +F                
Sbjct: 249 HCATPTMRLTGIEIAPEAIACARQSAAQLGLSNLHFQALDSTQFAT-------------- 294

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIER 343
              +   + + V+PPR G+       +       I+Y SCN  ++  D++ LS  + +ER
Sbjct: 295 -HEADTPQLVLVNPPRRGIGAELCDYLSRMAPLYIIYSSCNARTMATDIARLS-GYRVER 352

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           + LFD FP+T H E   LLVR+
Sbjct: 353 VQLFDMFPHTAHYEVLTLLVRE 374


>gi|145589476|ref|YP_001156073.1| RNA methyltransferase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047882|gb|ABP34509.1| 23S rRNA m(5)U-1939 methyltransferase [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 476

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 136/390 (34%), Gaps = 39/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPNLQIFRSEP-IHYRMRAEFHI---WHD 54
             T+       Q+A K   L    Q +   +   +      P   YR RA          
Sbjct: 97  GCTMQHLDIRAQVAMKQRVLEDDLQHLAKLKPQEILRPMGGPTWEYRHRARLSAVNRSIK 156

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
              +     + ++     +         ++ L+ ++   +    ++  ++ QI+    + 
Sbjct: 157 KGTVLIGFHEGKSGYVADMTACEILPKHVSNLLPQLRTLVNGLSIV-DRMPQIEVAVGEP 215

Query: 115 DQAI---------VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           +            VT +  R L    ++    LR      +  I L  +  +T      +
Sbjct: 216 EDPNSLDPKKARPVTALVFRNLKPLTQDDEQLLRSFADEHQVWIWLQPKGIETVAPFYPE 275

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFS 224
                  +    +    +   FTQ N  +N  ++   +          +L+L+CG GNF+
Sbjct: 276 TGKLCYRLPEFEIEMPFMPADFTQVNHLMNRALVSKAIRLLEVNPSDRVLDLFCGIGNFT 335

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LAR    VL +E  +     A+ N   N + +             +  R   F    D
Sbjct: 336 LPLARKAKTVLGIEGLETLTTRAKANAVHNGLAD-----------KASFMRSDLFEVTPD 384

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--------HILYISCNPDSLCRDLSILS 336
                 + +   +DPPR G  +    + + +          I+Y+SCNP +L RD  IL 
Sbjct: 385 TIASWGKAERWLMDPPREGAMEICKALAELHEEDNLLLPQRIVYVSCNPKTLARDAEILC 444

Query: 337 --TTHTIERLALFDQFPYTRHMECGVLLVR 364
               +T++   + + FP+T H+E   +  R
Sbjct: 445 HQAGYTLQSAGVVNMFPHTSHVESMAVFDR 474


>gi|261401379|ref|ZP_05987504.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria lactamica
           ATCC 23970]
 gi|269208586|gb|EEZ75041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria lactamica
           ATCC 23970]
          Length = 443

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 136/372 (36%), Gaps = 25/372 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDG-D 56
             +L       Q+A K   + + +        Q           HYR RA F +  D   
Sbjct: 78  GCSLQHISPAAQVAFKQRMMEEQLERIGKVRPQQILPPIYGYARHYRDRARFSVSLDKLC 137

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            L      ++T + + I   M     ++  +  +   ++      +     ++    S+ 
Sbjct: 138 RLKLGFQAKKTNDVVDISSCMLLPKPVSDKLPAIRGLLQDLAEEGSVARFAEFYRG-SEI 196

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLTVA 174
            ++ + +   L         +  D+  +  +Q+ L      ++    +    +   L   
Sbjct: 197 TVLNIAFKSKLRQNEENRIRQWFDSELSDGWQVWLQIEGGVSQPFYPKTDKTLKYTLPEF 256

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
           G  + +R     FTQ N   N  M+   +      QG+ + +L+CG GNFSL + +    
Sbjct: 257 GIEMPFR--PGDFTQINTDTNRLMVSRAVKMLDIRQGERIADLFCGLGNFSLPMVKSGAD 314

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E A+  V  A  N   N  +          +F  A      F+  +       RF 
Sbjct: 315 VVGIEGAENLVRRAWQNARLNGCDG-------QTDFIAA----NLFDCTEKTVASWGRFD 363

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
            + +DPPRSG  +    +   Y    I+Y+SCNP +L RD  +L    + +    + + F
Sbjct: 364 KMLIDPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSGAGIMNMF 423

Query: 351 PYTRHMECGVLL 362
             T H E   + 
Sbjct: 424 AQTSHTESVAVF 435


>gi|294338841|emb|CAZ87175.1| putative 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Thiomonas sp. 3As]
          Length = 470

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 127/398 (31%), Gaps = 62/398 (15%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIW--HDGDDLYHIMFDQ 65
            QLA K   L            Q+           YR RA   +        +     ++
Sbjct: 89  AQLAFKQRILEDDFWHLSRLKPQLLLRPIAGPNWGYRTRARLTVRLVVKKGGVLVGFHEK 148

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            +     +         ++ L++ +   I        +  QI+         +V     R
Sbjct: 149 GSSYVADMRSCEVLPRAVSDLLLPLRELIAGL-SRPERAPQIELAMGDRVTVLVL----R 203

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L+        RLRD       Q  L  +   +   LD D       +    ++      
Sbjct: 204 HLEPLTDADRQRLRDFGQQHGVQWWLQPKGPDSVAPLDPDAEPLSYALPEFGIVMPFRPT 263

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            FTQ N  IN  M+   L      + D +++ +CG GNF+L +A    +VL VE +   V
Sbjct: 264 DFTQVNPQINRVMVARALRLLGARRTDRVIDWFCGLGNFTLPIATQARQVLGVEGSATLV 323

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG 303
             A  N   N + +  +               R    +   D+ +Y       VDPPR G
Sbjct: 324 ARALDNALHNDLQDKVVFTA------------RNLFEMDADDLRAYGEADLWLVDPPRDG 371

Query: 304 LDDATVGMVQA-----------------------------------YPHILYISCNPDSL 328
                  + +A                                      I+Y+SCNP +L
Sbjct: 372 ALALCKALAEAVNGPLGTPGEEETRAAGEASAAPKPVAPPVAPFKPPRRIVYVSCNPATL 431

Query: 329 CRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RD  +L     +T+    + + FP+T H+E   +  R
Sbjct: 432 ARDAGLLVHQAGYTLRAAGVMNMFPHTAHVESMAVFER 469


>gi|282882158|ref|ZP_06290797.1| RNA methyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|281297923|gb|EFA90380.1| RNA methyltransferase [Peptoniphilus lacrimalis 315-B]
          Length = 441

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 140/387 (36%), Gaps = 43/387 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--IHYRMRAEFHIWHDGDDLY 59
             T     Y++++  K   L  ++      +     S     +YR + EF          
Sbjct: 73  GCTYDGFSYDKEIEYKEKLLNNLLHEELNLDNIKIYSAGIFENYRNKMEFTFGDTYKGSP 132

Query: 60  HIMFDQQTKERMRIDY---FMPGSLLINALMIEMMATIRLEPLLRAK-----LFQIDYLT 111
             +   +      I+            N +  +     + +     +     L  +    
Sbjct: 133 LALGLHKKNRFYEIENTNNCRIAHEDFNIIREKTRDFFKDKAFFNRRSHEGTLRHLAIRR 192

Query: 112 SQSDQAIVTLIYHRLLDDAWR---------ECAIRLRDALHARKYQIQLIGRANKTKICL 162
           +   + +V ++  +  D   +         +   +++   H                I  
Sbjct: 193 TNYGEILVNIVTTKDNDLDLKSYVDELLSLKLEAQIKGICHTINDSQGDAIIKEDFHILY 252

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            RDYV E L      L ++    SF Q N     ++ +        +QG  +L+LYCG G
Sbjct: 253 GRDYVIEELL----GLKFKIGTFSFFQTNTYSAAYLYQLAFDMIDNLQGKKVLDLYCGTG 308

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             S V A+  + VL VEI + +V AAR N   N+++NV  +     +    +        
Sbjct: 309 TISQVFAKKAESVLGVEIVEEAVNAARENAQYNNISNVDFIAGDVAKVVNDL-------- 360

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYP-HILYISCNPDSLCRDLS-ILST 337
                    +   I +DPPR G++   A   ++   P   LYISCNP S  +D+   +  
Sbjct: 361 -------DIKADIIILDPPRVGINNPKALDKIIDFSPEEFLYISCNPISYVKDVKRFIER 413

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + ++++   DQFP T ++E   LL +
Sbjct: 414 GYKLKKIVGLDQFPRTVNLELISLLEK 440


>gi|157146487|ref|YP_001453806.1| 23S rRNA methyluridine methyltransferase [Citrobacter koseri ATCC
           BAA-895]
 gi|167012636|sp|A8AIQ7|RUMB_CITK8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|157083692|gb|ABV13370.1| hypothetical protein CKO_02247 [Citrobacter koseri ATCC BAA-895]
          Length = 376

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 136/371 (36%), Gaps = 39/371 (10%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KE 69
           QL+ K   L+ ++  F V             +R +A+  +    +     M  +    ++
Sbjct: 24  QLSAKTADLKGLLADFSVEQWCAPVSGPEQAFRNKAKMVVSGSVEKPLLGMLHRDGTPED 83

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQSDQAIVTLIYHR 125
                 +      + A +   +A   L P      R +L  I    SQ D  ++     R
Sbjct: 84  LSDCPLYPDTFAPVFATLKPFIARAGLTPYNVARKRGELKYILLTESQFDGGMMLRFVLR 143

Query: 126 ------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVAGR 176
                  L  A      +L   L      IQ +  A    +T+I L      + L     
Sbjct: 144 SETKLAQLRAALPWLQAQLPQ-LKVITANIQPVHMAIMEGETEIFLTE---QQALAERFN 199

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVL 235
            +       SF Q N  +  H+        + +    + +L+CG G F L  A     + 
Sbjct: 200 DVPLWIRPQSFFQTNPVVASHLYATARDWVRQLPVHHMWDLFCGVGGFGLHCATPEMTLT 259

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +EIA  ++  A+ + A   + N+    + S +F                       + +
Sbjct: 260 GIEIAPEAIACAKQSAAELGLTNLHFQALDSTQFATG---------------QGEVPELV 304

Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
            V+PPR G+  A    +   A  +I+Y SCN  ++ +D++ L   + IER+ LFD FP+T
Sbjct: 305 LVNPPRRGIGKALCDYLSQMAPEYIIYSSCNAQTMAKDIANL-PGYRIERVQLFDMFPHT 363

Query: 354 RHMECGVLLVR 364
            H E   LL +
Sbjct: 364 AHYEVLTLLTK 374


>gi|262164471|ref|ZP_06032209.1| RNA methyltransferase TrmA family [Vibrio mimicus VM223]
 gi|262026851|gb|EEY45518.1| RNA methyltransferase TrmA family [Vibrio mimicus VM223]
          Length = 375

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 148/382 (38%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S       Y QQ+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHQCAQPYSQQVENKDQQLRELIAPAMDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQALLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPTLIAAFPTIEVVSVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREISPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPDTSVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LLVRK
Sbjct: 354 VQWFDMFPHTDHAEVLTLLVRK 375


>gi|255019188|ref|ZP_05291314.1| hypothetical protein LmonF_18146 [Listeria monocytogenes FSL
           F2-515]
          Length = 176

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 183 IENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
              SF Q N      + +  + AA    +  +++ YCG G+ SL LA+    V  VEI  
Sbjct: 2   SARSFYQVNPLQTEVLYQQAIDAAELTGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVD 61

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +++ AR N   N + N       ++E   +  +                   + VDPPR
Sbjct: 62  QAIQDARANAELNELANTTFETGKAEEVIPSWYK------------AGIVADVLVVDPPR 109

Query: 302 SGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMEC 358
            G D+  +  + A     ++Y+SCNP +L RD+ IL+   +  +++   D FP T H+E 
Sbjct: 110 KGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGYVAKKVQPVDMFPMTTHIEA 169

Query: 359 GVLL 362
             +L
Sbjct: 170 VTVL 173


>gi|171913271|ref|ZP_02928741.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 408

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 142/373 (38%), Gaps = 66/373 (17%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQM---MLAFQVPNLQIFRSEPIH-YRMRAEFHIWHDGD 56
            G       Y  QL  K  ++ ++   M   + P   +  S   + YR +   H     D
Sbjct: 90  GGCQYQNMDYPTQLDWKRQQVAELLKHMARIEHPVEPVIPSPTQYAYRSKITPHFAPPRD 149

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +       R RI       + +  L                     + LTS  D+
Sbjct: 150 GTITEIGFLADSSRYRIIDVPRCEIAMPELN--------------------ERLTSLRDE 189

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
                                 R   H  K    L+ RA++ K+  +     +       
Sbjct: 190 V---------------------RQNAHRYKRAATLLMRASEGKVLTESS---QTAVEVVE 225

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
            + +      F Q N  I    ++ V   A       L++ YCG+G F+L  ARHF++V 
Sbjct: 226 GVRFEFQAGDFFQNNPFILPAFVQHVAREARTDGARYLIDAYCGSGLFALACARHFEQVN 285

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VEI++ +V  A +N   N++ N K +  S++     +             +      +I
Sbjct: 286 GVEISESAVAKATHNARINNITNAKFIAGSAERIFAGV-------------LLPAAESSI 332

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            VDPPR+G  +  +  + AY   +++Y+SCNP +  RDL   +   + +E++  FD FP 
Sbjct: 333 IVDPPRAGCGEDFLHQLFAYGPHNVVYVSCNPATQMRDLVKFVEAGYILEKVQPFDLFPQ 392

Query: 353 TRHMECGVLLVRK 365
           TRH+EC + L +K
Sbjct: 393 TRHLECVMTLTKK 405


>gi|332968888|gb|EGK07935.1| 23S rRNA (uracil-5-)-methyltransferase [Kingella kingae ATCC 23330]
          Length = 433

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 135/372 (36%), Gaps = 26/372 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHD-GD 56
              L   ++  Q+A K     + +        +           HYR R    I  D   
Sbjct: 73  GCALQHLEFSAQVAAKQRVFEEQLQRIGKVQPEQLLPPIYGSAWHYRSRTRLAISLDWAG 132

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL--EPLLRAKLFQIDYLTSQS 114
           ++      +++K+ + I         I++ +  + A ++       + ++  +D L    
Sbjct: 133 EVQIGYQAKRSKKIVPISQCAVLPERISSSLHTIRAGLQAIHRAAPKIRMQHVDILAGDH 192

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
              +       L  +   +    L+      K+QI         +    +   +    + 
Sbjct: 193 ITVLNIAADKPLPANEVAQMQSSLQ---SQGKWQIWQQIGKRPAQAIAPKTAPELSYALP 249

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              L        FTQ N  +N  M+   +   +    + + +L+CG GNF+L +AR   +
Sbjct: 250 EFGLHMPFRVGDFTQINLPMNEVMVSRAIRLLQPQAHERIADLFCGLGNFTLPIARSGAQ 309

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E A    + A +N   N ++N++       + T     +  +            F 
Sbjct: 310 VIGIEGADFLTQRATHNAQQNGLHNIEFSTADLFDTTPQTIEQLGY------------FD 357

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
            + +DPPR+G       +   Y    I+Y+SCNP +  RD ++L    +      + + F
Sbjct: 358 KMLLDPPRAGAYAVVQALHAPYLPKRIVYVSCNPATFARDAAVLVGKGYRFSAAGIMNLF 417

Query: 351 PYTRHMECGVLL 362
           P+T H+E   + 
Sbjct: 418 PHTAHVEAMAVF 429


>gi|307249529|ref|ZP_07531516.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858384|gb|EFM90453.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 442

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 139/370 (37%), Gaps = 29/370 (7%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDD 57
            G  +     + Q   K   L Q +   Q   +    +       YR RA+  I    + 
Sbjct: 95  GGCQMQHIPLDLQREAKQQALFQRLQKLQSQPIDFQPMIIGNDKGYRRRAKLSIALQNNQ 154

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           L      Q + + + ++        ++ L I+ + ++      +  L  I+ +  Q+D  
Sbjct: 155 LAIGFRMQNSNQIIPLEQCGVLVEPLSQL-IKPLQSLFSTWQNKKSLGHIELV--QADDT 211

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  LI  R +     + +  L+         + ++   N            E        
Sbjct: 212 ITMLI--RNVGQFHPQDSRNLQQFAERHSLSLYVMTAENDITHLSG-----EAPYYQIHG 264

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           +        F Q N  +N  M++  L       Q  +L+L+CG GNF+L +A+    V+ 
Sbjct: 265 VKLGFSIRDFIQVNGDLNEKMVDKALEWLDLSAQDRVLDLFCGMGNFTLPIAKQAGFVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +P V  AR N   + + NV   + +  E               D    S  F  + 
Sbjct: 325 VEGVEPMVAQARQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVL 372

Query: 297 VDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354
           +DP R+G       +    P  I+Y+SCNP +L RD   L    + +++ A+ D FP+T 
Sbjct: 373 LDPARNGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTG 432

Query: 355 HMECGVLLVR 364
           H+E   L  +
Sbjct: 433 HLESISLFTK 442


>gi|221066169|ref|ZP_03542274.1| RNA methyltransferase, TrmA family [Comamonas testosteroni KF-1]
 gi|220711192|gb|EED66560.1| RNA methyltransferase, TrmA family [Comamonas testosteroni KF-1]
          Length = 499

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 135/405 (33%), Gaps = 51/405 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              +       Q+A K   L   +        +            YR R+   + +    
Sbjct: 103 GCKMQHLHVAAQVAIKQRVLEDNLWHLAKVKPETLLRPIEGPAWGYRFRSRLSVRYVAKK 162

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     +++++    ++        ++A+++ M A I      R    QI+       
Sbjct: 163 GKVLVGFHERKSRYIADMEVCKILPPHVDAMLMPMRALIASMDA-RETCPQIEVACGDHV 221

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V     R L+        RLRD   A+  Q  L  +   T   ++         +  
Sbjct: 222 TALVL----RHLEPLSDADKQRLRDFAAAQNVQWWLQPKGPDTVHLMEEGGTQLSYGLPD 277

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +        FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     V
Sbjct: 278 FGITMPFKPTDFTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFTLPIATMAREV 337

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E ++  V+ +  N A N+    +  +++   F         F     + I       
Sbjct: 338 LGIEGSETLVKRSHENYAGNNATRSEEDKLAPTSFV----ARNLFEMTPAMLIADGNSDK 393

Query: 295 IFVDPPRSGLDDATVGMV---------------------------------QAYPHILYI 321
             VDPPR G    +  +                                  Q    I+Y+
Sbjct: 394 WLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQENWQFPKRIVYV 453

Query: 322 SCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           SCNP +L RD  +L     +      + + FP+T H+E   +  R
Sbjct: 454 SCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 498


>gi|303252554|ref|ZP_07338717.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247305|ref|ZP_07529353.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648522|gb|EFL78715.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856149|gb|EFM88304.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 442

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 139/370 (37%), Gaps = 29/370 (7%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDD 57
            G  +     + Q   K   L Q +   Q   +    +       YR RA+  I    + 
Sbjct: 95  GGCQMQHIPLDLQREAKQQALFQRLQKLQSQPIDFQPMIIGNDKGYRRRAKLSIASQNNQ 154

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           L      Q + + + ++        ++ L I+ + ++      +  L  I+ +  Q+D  
Sbjct: 155 LAIGFRMQNSNQIIPLEQCEVLVEPLSQL-IKPLQSLFSTWQNKKSLGHIELV--QADDT 211

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  LI  R +     + +  L+         + ++   N            E        
Sbjct: 212 ITMLI--RNVGQFHPQDSRNLQQFAERHSLSLYVMTAENDITHLSG-----EAPYYQIHG 264

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           +        F Q N  +N  M++  L       Q  +L+L+CG GNF+L +A+    V+ 
Sbjct: 265 VKLGFSIRDFIQVNGDLNEKMVDKALEWLDLSAQDRVLDLFCGMGNFTLPIAKQAGFVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +P V  A+ N   + + NV   + +  E               D    S  F  + 
Sbjct: 325 VEGVEPMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVL 372

Query: 297 VDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354
           +DP R+G       +    P  I+Y+SCNP +L RD   L    + +++ A+ D FP+T 
Sbjct: 373 LDPARNGAFFCLDHLAALNPETIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTG 432

Query: 355 HMECGVLLVR 364
           H+E   L  +
Sbjct: 433 HLESISLFTK 442


>gi|300814227|ref|ZP_07094503.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300511651|gb|EFK38875.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 441

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 145/387 (37%), Gaps = 43/387 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFRSEPI-HYRMRAEFHIWHDGDDLY 59
             T     Y++++  K   L  ++     + N++I+ +    +YR + EF          
Sbjct: 73  GCTYDGFSYDKEIEYKEKLLNNLLHEELNIDNVKIYSAGIFENYRNKMEFTFGDTYKGSP 132

Query: 60  HIMFDQQTKERMRIDY---FMPGSLLINALMIEMMATIRLEPLLRAK-----LFQIDYLT 111
             +   +      I+            N +  +     + +     +     L  +    
Sbjct: 133 LALGLHKKNRFYEIENTNNCRIAHEDFNIIREKTRDFFKDKAFFNRRSHEGTLRHLAIRR 192

Query: 112 SQSDQAIVTLIYHRLLDDAWR---------ECAIRLRDALHARKYQIQLIGRANKTKICL 162
           +   + +V L+  +  D   +         +   +++   H                I  
Sbjct: 193 TNYGEILVNLVTTKDNDLDLKSYVDELLSLKLEAQIKGICHTINDSQGDAIIKEDFHILY 252

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            RDYV E L      L ++    SF Q N     ++ +        +QG  +L+LYCG G
Sbjct: 253 GRDYVIEELL----GLKFKIGTFSFFQTNTYSAAYLYQLAFDMIDNLQGKKVLDLYCGTG 308

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             S V A+  + VL VEI + +V AAR N   N+++NV  +     +    +        
Sbjct: 309 TISQVFAQKAESVLGVEIVEEAVNAARENAQYNNISNVDFIAGDVAKVVNDL-------- 360

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYP-HILYISCNPDSLCRDLS-ILST 337
                    +   I +DPPR G++   A   ++   P   LYISCNP S  +D+   +  
Sbjct: 361 -------DIKADIIILDPPRVGINNPKALDKIIDFSPEEFLYISCNPISYVKDVKRFIER 413

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + ++++   DQFP T ++E   LL +
Sbjct: 414 GYKLKKIVGLDQFPRTVNLELISLLEK 440


>gi|238920414|ref|YP_002933929.1| 23S rRNA methyluridine methyltransferase [Edwardsiella ictaluri
           93-146]
 gi|238869983|gb|ACR69694.1| 23S rRNA (uracil-5-)-methyltransferase RumB, putative [Edwardsiella
           ictaluri 93-146]
          Length = 377

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 138/382 (36%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y +QL +K   L  ++    V   L    S  +  R +A+  +    +    
Sbjct: 13  SCQWLSIPYSRQLEDKQRHLSALLSGHSVAQWLSAQPSAELAMRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        D           F      I    +   +  R    L+  L     L
Sbjct: 73  GMLQRDGSGVDLCDCPLYPDSFAVVFAALKSFIPRAGLTPYSVARRRGELKYLLLTESRL 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
             +     V     +L  L  A      +L   L      IQ +  A    + +I L   
Sbjct: 133 NGEMMLRFVLRSETKLAQLRQALPWLQAQLPQ-LAVISVNIQPVHMAILEGEREIFLTSQ 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
            V   L+ +   +       SF Q N  +   +        + +   ++ +L+CG G F 
Sbjct: 192 QV---LSESFNGVPLYIRPQSFFQTNPAVAQALYAQARDWVQALGVTEMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     +  +EI+  ++  AR + A   +  V    + S  F               
Sbjct: 249 LHCATPEMTLTGIEISAGAIACARRSAAQLGLTKVSFAALDSGAFA-------------- 294

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIE 342
            D HS   + + V+PPR G+  A    +   A P+ILY SCN  S+ +D+  L+  + IE
Sbjct: 295 -DAHSAVPQLVLVNPPRRGIGAALCDYMNRMAPPYILYSSCNAQSMVQDIERLAD-YRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           ++ LFD FP+T H E   LLVR
Sbjct: 353 KVRLFDMFPHTAHYEVLTLLVR 374


>gi|307260780|ref|ZP_07542467.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869506|gb|EFN01296.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 442

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 140/370 (37%), Gaps = 29/370 (7%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDD 57
            G  +     + Q   K   L Q +   Q   +    +       YR RA+  I    + 
Sbjct: 95  GGCQMQHIPLDLQREAKQQALFQRLQKLQSQPIDFQPMIIGNDKGYRRRAKLSIALQNNQ 154

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           L      Q + + + ++        ++ L I+ + ++      +  L  I+ +  Q+D  
Sbjct: 155 LAIGFRMQNSNQIIPLEQCEVLVEPLSQL-IKPLQSLFSTWQNKKSLGHIELV--QADDT 211

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  LI  R +     + +  L+         + ++   N            E        
Sbjct: 212 ITMLI--RNVGQFHPQDSRNLQQFAERHSLSLYVMTAENDITHLSG-----EAPYYQIHG 264

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           +        F Q N  +N  M++  L       Q  +L+L+CG GNF+L +A+    V+ 
Sbjct: 265 VKLGFSIRDFIQVNGDLNEKMVDKALEWLDLSAQDRVLDLFCGMGNFTLPIAKQAGFVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +P V  A+ N   + + NV   + +  E               D    S  F  + 
Sbjct: 325 VEGVEPMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVL 372

Query: 297 VDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354
           +DP R+G   +   +    P  I+Y+SCNP +L RD   L    + +++ A+ D FP+T 
Sbjct: 373 LDPARNGAFFSLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTG 432

Query: 355 HMECGVLLVR 364
           H+E   L  +
Sbjct: 433 HLESISLFTK 442


>gi|290473965|ref|YP_003466839.1| putative tRNA (uracil-5-)-methyltransferase with
           S-adenosyl-L-methionine-dependent methyltransferase
           domain [Xenorhabdus bovienii SS-2004]
 gi|289173272|emb|CBJ80047.1| putative tRNA (uracil-5-)-methyltransferase with
           S-adenosyl-L-methionine-dependent methyltransferase
           domain [Xenorhabdus bovienii SS-2004]
          Length = 377

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 136/379 (35%), Gaps = 37/379 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL++K   L+Q++        L    S    +R +A+  +    +    
Sbjct: 13  SCQWLNKSYSQQLSDKQQHLQQLLRETSATYWLPPVSSLISGFRNKAKMVVSGSVERPQL 72

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +  +     D           F    + I    +      R +  L+  L      
Sbjct: 73  GMLHRDGRTVDLCDCPLYPQYFQLVFESIKIFIAKAGLVPYNVARKKGELKYILLTESRA 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA--NKTKICLDRDY 166
           + +     V     +L  L+ A      +L   L      IQ    A     K  +  ++
Sbjct: 133 SGEMMLRFVLRSETKLAQLEHALPWLQEQLPQ-LTVISANIQPTHMAILEGEKEVIFTEH 191

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +       SF Q N  I   +        + +    + +L+CG G F L
Sbjct: 192 --KMLKEIFNGIPLYIRPRSFFQTNPEIASALYATAGRWVRELNISSMWDLFCGAGGFGL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    R+  +EI+  ++  A+ +  +  +  V+   + S  F     +  E       
Sbjct: 250 HCADKETRLTGIEISAEAIACAKNSAKSLGLEQVEFQALDSTHFALDKAQLPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR G+  A    +   A   ILY SCN +++ +D++ L   + IE+
Sbjct: 304 ---------VLVNPPRRGIGKALCEYLSRMAPKFILYSSCNAETMAKDIAALEQ-YRIEK 353

Query: 344 LALFDQFPYTRHMECGVLL 362
           + LFD FP+T H E   LL
Sbjct: 354 VQLFDMFPHTEHYETLALL 372


>gi|307256341|ref|ZP_07538124.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865167|gb|EFM97067.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 442

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 139/370 (37%), Gaps = 29/370 (7%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDD 57
            G  +     + Q   K   L Q +   Q   +    +       YR RA+  I    + 
Sbjct: 95  GGCQMQHIPLDLQREAKQQALFQRLQKLQSQPIDFQPMIIGNDKGYRRRAKLSIALQNNQ 154

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           L      Q + + + ++        ++ L I+ + ++      +  L  I+ +  Q+D  
Sbjct: 155 LAIGFRMQNSNQIIPLEQCEVLVEPLSQL-IKPLQSLFSTWQNKKSLGHIELV--QADDT 211

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  LI  R +     + +  L+         + ++   N            E        
Sbjct: 212 ITMLI--RNVGQFHPQDSRNLQQFAERHSLSLYVMTAENDITHLSG-----EAPYYQIHG 264

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           +        F Q N  +N  M++  L       Q  +L+L+CG GNF+L +A+    V+ 
Sbjct: 265 VKLGFSIRDFIQVNGDLNEKMVDKALEWLDLSAQDRVLDLFCGMGNFTLPIAKQAGFVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +P V  A+ N   + + NV   + +  E               D    S  F  + 
Sbjct: 325 VEGVEPMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVL 372

Query: 297 VDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354
           +DP R+G       +    P  I+Y+SCNP +L RD   L    + +++ A+ D FP+T 
Sbjct: 373 LDPARNGAFFCLDHLAALNPETIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTG 432

Query: 355 HMECGVLLVR 364
           H+E   L  +
Sbjct: 433 HLESISLFTK 442


>gi|229526519|ref|ZP_04415923.1| RNA methyltransferase TrmA family [Vibrio cholerae bv. albensis
           VL426]
 gi|229336677|gb|EEO01695.1| RNA methyltransferase TrmA family [Vibrio cholerae bv. albensis
           VL426]
          Length = 377

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 149/383 (38%), Gaps = 37/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y +Q+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSSDTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPTLIAAFPTIEVISVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGCELTAQLEALAPKHILYSSCNPQTMAKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRKP 366
           +  FD FP+T H E   LLVRK 
Sbjct: 354 VQWFDMFPHTDHAEVLTLLVRKD 376


>gi|227112030|ref|ZP_03825686.1| 23S rRNA methyluridine methyltransferase [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 377

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 136/384 (35%), Gaps = 39/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL++K   L  ++    V   L +  S    +R +A+  +    +    
Sbjct: 13  SCQWLEKAYPQQLSDKQQHLEGLLQPHAVQCWLPVQPSVQSAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M  +     +      +      I  ++   +A   L P         L+  L      
Sbjct: 73  GMLHRDGTAVDLCDCPLYPSTFAPIFDVLKVFIARAGLTPYNVARRRGELKYLLLTESTQ 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
                   V     +L  L  A      +L   L      IQ + +A    KT+I L   
Sbjct: 133 HGTFMLRFVLRSETKLPQLRAALPWLQQQLPQ-LEVISVNIQPVHQAIMEGKTEIILSDA 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
                L      +       SF Q N  +   +          +    + +L+CG G F 
Sbjct: 192 AA---LAEQFNQVPLYIRPQSFFQTNPQVAAALYATARDWVAELNITSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    R+  +EI+  ++  AR +     +  V+   + S +F  A            
Sbjct: 249 LHCASSEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +     + V+PPR G+       +   A  +ILY SCN +S+ +D++ L+  +   
Sbjct: 297 ---KAEIPDLVLVNPPRRGIGSELCAYLSRMAPDYILYSSCNAESMAKDMTELTN-YRAL 352

Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366
           R+ LFD FP+T H E   LL R+ 
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLKRED 376


>gi|254284557|ref|ZP_04959524.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae
           AM-19226]
 gi|150425342|gb|EDN17118.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae
           AM-19226]
          Length = 375

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 148/382 (38%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y  Q+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHLCAQPYSDQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPTLIAAFPTIEVVSVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEQFNDVPMVIRPKSFFQTNPQVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMAKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LLVRK
Sbjct: 354 VQWFDMFPHTNHAEVLTLLVRK 375


>gi|156934644|ref|YP_001438560.1| 23S rRNA methyluridine methyltransferase [Cronobacter sakazakii
           ATCC BAA-894]
 gi|167012640|sp|A7MF48|RUMB_ENTS8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|156532898|gb|ABU77724.1| hypothetical protein ESA_02478 [Cronobacter sakazakii ATCC BAA-894]
          Length = 375

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 132/376 (35%), Gaps = 43/376 (11%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           + QLA K+  LR ++ A  V           + +R +A+  +    +     M  +    
Sbjct: 22  DTQLAAKMTDLRTLLAALPVGEWGAPVSGPELAFRNKAKMVVSGSVEKPLLGMLHRDG-T 80

Query: 70  RMRIDYFM--PGS---------LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
            + +      P S           I    +      R    L+  L     L        
Sbjct: 81  PVDLTECPLYPASFYAVFAALKPFIARAGLTPYNVARKRGELKYLLLTQSTLDGGLMLRF 140

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKY---QIQLIGRA---NKTKICLDRDYVDERLT 172
           V     +L  +  R     L   L   K     IQ +  A      +I L +    + L 
Sbjct: 141 VLRSKEKL--EQLRAALPGLLAELPQLKVVTANIQPVHMAIMEGDEEIWLTQ---QQALA 195

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHF 231
            +   +       SF Q N  +   +        + +    + +L+CG G F L  A   
Sbjct: 196 ESFNGVPLWIRPQSFFQTNPTVASALYATARDWVRALPVNHMWDLFCGVGGFGLHCATPE 255

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             +  +EIA  ++ +AR +  A  + NV    + S +F    +                 
Sbjct: 256 MTLTGIEIAPEAIASARASAQALGLRNVHFQALDSTDFATGQQA---------------V 300

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349
              + V+PPR G+  A    +   A  +I+Y SCN  ++ +D+      + I R+ LFD 
Sbjct: 301 PDLVLVNPPRRGIGKALCEYLSHMAPRYIVYSSCNAQTMAKDIGEW-PGYRIARVQLFDM 359

Query: 350 FPYTRHMECGVLLVRK 365
           FP+T H E   LLVR+
Sbjct: 360 FPHTAHYEVLTLLVRE 375


>gi|261367469|ref|ZP_05980352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum
           variabile DSM 15176]
 gi|282570242|gb|EFB75777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Subdoligranulum
           variabile DSM 15176]
          Length = 453

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 123/387 (31%), Gaps = 41/387 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHD-GD 56
              L    Y+ +   K   ++         +L +       +   YR + +  +  D   
Sbjct: 81  GCGLRHISYQAECRAKTCFVQDAFARLGKLDLPVHPVLGAPDINRYRNKVQLPVGTDENG 140

Query: 57  DLYHIMFDQQTKERMRIDYF-----------MPGSLLINALMIEMMATIRLEPLLRAKLF 105
            L    F  ++   +                     L+               L+R    
Sbjct: 141 HLTTGFFAGRSHRIIACPDCKLQPEWMNRLAARACELLEKAGATSYDEESHTGLVRHLFL 200

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAI-----RLRDALHARKYQIQLIGRANKTKI 160
           +  + + Q     +  +  R L D  R C        L   L         +     T  
Sbjct: 201 RQGWHSGQRLLCFI--LNGRALPDEQRICEELQREFDLTTVLVNENTARTNVILGPHTHT 258

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
            L    +++ L      +  R   + F Q N      +             D LL+LYCG
Sbjct: 259 VLGPGVIEDTLA----GVSLRMGVHEFYQVNTPAAEVLYAQARTYAALQPEDFLLDLYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L +     R+L VEI   +VE A+   A   ++  +             R +   
Sbjct: 315 MGTIGLSMLPDCRRLLGVEIVPQAVEGAKATAARLGLSPQR----------ADFRCQDAG 364

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILST 337
                +         I VDPPR G D AT+  +VQ  P  ++ +SCN  +  RD   L+ 
Sbjct: 365 AAAAQLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAARDTRWLTE 424

Query: 338 -THTIERLALFDQFPYTRHMECGVLLV 363
             +    +   D FP TRH+EC V LV
Sbjct: 425 HGYRAMEVQPVDLFPRTRHVECVVKLV 451


>gi|91207817|sp|Q5H1Q8|RUMA_XANOR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 444

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 138/374 (36%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 88  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALSGDNWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   +   +    +         I    I ++A +      +  + QI+++    D
Sbjct: 148 AKTLVGFRELDPRFVADLSVCYTVIPQIGE-NIPLLAALVEGMDGKRDIPQIEFIAG-DD 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L    ++  I      H     +Q  G  +   +      +  RL    
Sbjct: 206 AVALTIRHMQPLSARDQQAWIAFAQE-HGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWD 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V
Sbjct: 265 VDLAFR--PLDFIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 323 VGVEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDK 370

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 371 LLLDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 430

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 431 HTAHVESIAVFERR 444


>gi|283833842|ref|ZP_06353583.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Citrobacter youngae
           ATCC 29220]
 gi|291070510|gb|EFE08619.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Citrobacter youngae
           ATCC 29220]
          Length = 375

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 138/382 (36%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-EPIHYRMRAEFHIWHDGDDLYH 60
           S   +      QL  K+  LRQ++    V   +   S     +R +A+  +    +    
Sbjct: 13  SCQWIEQPVSHQLTAKMADLRQLLAEHAVAEWRAPVSGPESAFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARKRGELKYLLLTESQF 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRDY 166
           D  ++     R       L  A      +L     + A    + +     +T+I L    
Sbjct: 133 DGGMMLRFVLRSDVKLAQLRAALPWLQAQLPQLKVIAANIQPVHMAIMEGETEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +  H+        + +  D + +L+CG G F L
Sbjct: 191 -QQALAERFNDVPLWIRPQSFFQTNPVVAGHLYATARDWVRQLPVDHMWDLFCGVGGFGL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    ++  +EIA  ++  A+ +     + N+    + S +F  A             
Sbjct: 250 HCATPQMKLTGIEIAPEAIACAKQSAQELGLQNLHFQALDSTQFATA------------- 296

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + I+R
Sbjct: 297 --QGEVPDLVLVNPPRRGIGKPLCDFLSHMAPRFIIYSSCNAQTMAKDIHEL-PGYRIDR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           + LFD FP+T H E   LL R+
Sbjct: 354 VQLFDMFPHTAHYEVLTLLSRR 375


>gi|20140271|sp|Q9JP88|RUMA_RHOGE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|7416824|dbj|BAA94073.1| ygcA [Rubrivivax gelatinosus]
          Length = 473

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 131/370 (35%), Gaps = 33/370 (8%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
            Q+A K   L   +        +            YR RA   + +       ++   + 
Sbjct: 93  AQVAVKQRVLEDNLWHLGKVKPERLLRPIHGPAWGYRWRARLSVRYVPKKGVVLVGFHER 152

Query: 68  KERMRID--YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           K R   D          ++A++  +   I      R +L QI+      D+ I  ++ H 
Sbjct: 153 KSRYVADMLECPVLPAKVSAMLPALRELIGAMEQ-RDRLPQIELAAG--DEVIALVLRHL 209

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
               A     +R   A H  ++ +Q  G     ++      +   L   G T+ ++    
Sbjct: 210 EPLSAGDAARLRAFGAEHGVQWWLQPKGPETVHRLDEGGPQLAYSLPEYGVTMPFK--PT 267

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            FTQ N  IN  +++  +        + +++ +CG GNF+L LAR    V  +E ++  V
Sbjct: 268 DFTQVNPQINRVLVDRAVRLLAPQPHERIVDWFCGLGNFTLPLARRAAAVHGIEGSETLV 327

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + AR           +    +      +      F    D  + S       VDPPR G 
Sbjct: 328 QRAR-----------ENAAANGLAANTSFAARNLFEMSADELMTSGAADAWLVDPPREGA 376

Query: 305 DDATVGMVQA--------YPHILYISCNPDSLCRDLSILS--TTHTIERLALFDQFPYTR 354
                 + +            I+Y+SCNP +L RD  ++            + + FP+T 
Sbjct: 377 FALAKSLAELRGREGWTPPRRIVYVSCNPATLARDAGLIVHLAGFRCVAAGVVNMFPHTA 436

Query: 355 HMECGVLLVR 364
           H+E   +  R
Sbjct: 437 HVESIAVFER 446


>gi|162319803|ref|YP_450784.2| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|91207816|sp|Q2P4L7|RUMA_XANOM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 444

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 138/374 (36%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 88  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPGLTGDNWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   +   +    +         I   +  ++A +      +  + QI+++    D
Sbjct: 148 AKTLVGFRELDPRFVADLSVCYTVIPQIGEKIP-LLAALVEGMDGKRDIPQIEFIAG-DD 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L    ++  I      H     +Q  G  +   +      +  RL    
Sbjct: 206 AVALTIRHMQPLSARDQQAWIAFAQE-HGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWD 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V
Sbjct: 265 VDLAFR--PLDFIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 323 VGVEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDK 370

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 371 LLLDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 430

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 431 HTAHVESIAVFERR 444


>gi|146306765|ref|YP_001187230.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas mendocina
           ymp]
 gi|145574966|gb|ABP84498.1| 23S rRNA m(5)U-1939 methyltransferase [Pseudomonas mendocina ymp]
          Length = 450

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 141/372 (37%), Gaps = 30/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGD- 56
              L    +  QLA K   L + +                     YR RA   +  D   
Sbjct: 99  GCNLQHMPHADQLALKQRTLTEQLSRLGGVQPDEWAASLVGPEFGYRRRARVAVRWDAKA 158

Query: 57  -DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L      + +++ + ID+       +  +   + A +R     +A +  ++  +  ++
Sbjct: 159 RQLQVGFRAEASQDIVAIDHCPVLVQPLQPIFRALPALLRSLEKPQA-VGHVELFSGTAE 217

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L +   L +A      RLR      + Q+ L G           +   E LT   
Sbjct: 218 T--VLLRHTAQLPEA---DLSRLRAFCGEHRAQLWLQGEGQPQPDDPAAELGFE-LTRWQ 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L YR     F Q N  +N  M+   L       G+ +L+L+CG GNF+L LAR    V
Sbjct: 272 LRLAYR--PGDFVQVNGPVNEAMVAQALDWLSVQPGERVLDLFCGLGNFALPLARQAAEV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  V  A  N  +N ++N    R                N L +       F  
Sbjct: 330 VAVEGVEAMVARAAANARSNGLDNAHFFRAD------------LSNPLANETWARGGFAA 377

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352
           + +DPPR G  +A  GM       ++Y+SCNP +L RD + L+   + + R  + D F  
Sbjct: 378 VLLDPPRDGALEAVRGMSALGARRLVYVSCNPTTLARDAAELAQQGYRLRRAGILDMFAQ 437

Query: 353 TRHMECGVLLVR 364
           T H+E   L  +
Sbjct: 438 TAHVEAMALFEK 449


>gi|124023185|ref|YP_001017492.1| SAM-dependent methyltransferase [Prochlorococcus marinus str. MIT
           9303]
 gi|123963471|gb|ABM78227.1| SAM-dependent methyltransferase [Prochlorococcus marinus str. MIT
           9303]
          Length = 465

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 144/395 (36%), Gaps = 49/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSE---PIHYRMRAEFHIWHDGD 56
             ++       Q   K   LR+++L     +  ++   ++    + YR RA   ++ + +
Sbjct: 91  GCSIQHLNDHGQSLLKQSHLREILLRLGQLDNKIEPIMTDYTRALGYRNRALIPLYRNRE 150

Query: 57  DLY-HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-----------PLLRAKL 104
                  + + + + + ++        I+  +  +   ++ +             +R   
Sbjct: 151 GQLLMGYYRRGSHQIIDLNRCPVLDRGIDQYLAWIKDDLQQQNWPADSDLSSGEGVRHLG 210

Query: 105 FQIDYLTSQSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
            +I   T Q    +V+        H+  +D W      ++      + Q   +    +T 
Sbjct: 211 IRIGQKTRQVLITLVSSTTELSGLHQQAND-WYRRWPEVKGITLNIQRQRNNLVLGQETI 269

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
           +      ++E        L       +F Q N      ++  +L        D+  ++ Y
Sbjct: 270 LLAGDLDIEEHFC----NLSLLLSTTTFFQVNTIQAERIVLKLLKWLSTTLPDINIIDAY 325

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  SL +A     V+ +E+   ++  A  N   N++ N   +          + +  
Sbjct: 326 CGIGTISLPIAAAGYHVIGLELHAEAIAQANKNALRNNLGNASFLCGDVSLLLAKILQ-- 383

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335
                            + +DPPR GLD   +  + +     + Y+SC+P +L RDL  L
Sbjct: 384 -------------HHDVLVLDPPRKGLDQMVIKTILSVRPERVAYLSCDPATLARDLKQL 430

Query: 336 ---STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              +  + I++L   D FP T H+EC  LL+R  S
Sbjct: 431 IVPNGPYQIDQLQPIDFFPQTMHIECLALLIRISS 465


>gi|170720402|ref|YP_001748090.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida
           W619]
 gi|169758405|gb|ACA71721.1| RNA methyltransferase, TrmA family [Pseudomonas putida W619]
          Length = 452

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 145/371 (39%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L    +E QLA K   L + +        Q            YR RA   +  D   
Sbjct: 101 GCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPQEWAAPLSGPEFGYRRRARVAVRWDVKA 160

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                    + +++ + ID        + +++  +   +R     +A +  ++  +  ++
Sbjct: 161 RQLEVGFRAEASQDIVAIDDCAVLVQPLQSILRHLPTVLRSLGKPQA-IGHVELFSGTAE 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +V  +     DD       RL+   +  K Q+ L G      +      +   L    
Sbjct: 220 ALLVRHVAPLPADD-----LARLQAFCNEAKAQLWLQGEGEPAPVDAGT-KLGFTLQPWQ 273

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  LA       + +L+L+CG GNF+L LAR    V
Sbjct: 274 LELAWR--PGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREV 331

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  V+ A  N   N+V+N +  +    +             L      +  F  
Sbjct: 332 VAVEGVQAMVDRAAANARNNNVHNARFFQADLSQ------------PLAGAGWAAEGFSA 379

Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP 
Sbjct: 380 VLLDPPRDGAFEVVQGIARLKAKRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQ 439

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 440 TAHVEAMALFE 450


>gi|308798903|ref|XP_003074231.1| tRNA (ISS) [Ostreococcus tauri]
 gi|116000403|emb|CAL50083.1| tRNA (ISS) [Ostreococcus tauri]
          Length = 351

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 104/361 (28%), Positives = 165/361 (45%), Gaps = 23/361 (6%)

Query: 14  LAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           L  KV RLR        P+   +I  S    +R R  F +  D                 
Sbjct: 3   LENKVARLRVAFADVLTPSTSFEIAESANSGHRSRCRFQVVRDDAGALKYALWANGGPNA 62

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSDQAIVTLIYHRLLDDA 130
            ++ F      I  +M  ++            L    +L S  S + +VTL+        
Sbjct: 63  IVETFPDAVGAIQDVMKGVLRAAERRKACERGLEAAHFLASVASGRVLVTLV-------- 114

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV-AGRTLIYRQIENSFTQ 189
                  L +       +++L+GR+    +    D V+E   +  G TL Y   E SF+ 
Sbjct: 115 -----EMLANDGDGVFAKVELMGRSKGVVVKTGSDRVEETYELRDGTTLRYHHAEGSFSN 169

Query: 190 PNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           PN  I +  +E++ A    I GD      LELYCG  N S  LA  FDR++AVEI    V
Sbjct: 170 PNRAITIATMEFLRACACEIVGDGKNVSALELYCGCANHSCALATIFDRIVAVEINPSLV 229

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AAR ++  N ++NV++V   S+   ++M   + F  ++   + S  F  + VDPPR+GL
Sbjct: 230 TAARESLEMNEIDNVEVVLADSQNVARSMMAGK-FVDVQGKALSSTDFDVVLVDPPRAGL 288

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T+ +V  + H+LY+SC P++L +++    +TH +E+  + D FP TRH+E  V + R
Sbjct: 289 DPDTLRLVSTFDHVLYVSCGPENLLQNIRNGLSTHVVEKFIVLDHFPNTRHIEVAVYMRR 348

Query: 365 K 365
           +
Sbjct: 349 R 349


>gi|75760089|ref|ZP_00740152.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492439|gb|EAO55592.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 406

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 124/331 (37%), Gaps = 30/331 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDG 55
              L    Y++QL +K D + Q    +   +++      +    P HYR +++  +    
Sbjct: 88  GCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKD 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-------GSLLINALMIEMMATIRLEPLLRAKLFQID 108
           + +   ++ Q + + + I + M         + ++  ++ ++  +I  E   +  +  I 
Sbjct: 148 EKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIV 207

Query: 109 YLTS-QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY- 166
             T+ Q+ +  VTLI  +       +    ++  + A K  +Q +     + I  D+ + 
Sbjct: 208 TRTAVQTGEVQVTLITTKEELPNKEQFVAEVQKQIPAVKSIMQNVNWRKTSVIFGDKTFK 267

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNF 223
               E +      L +     +F Q N    + + +    AA       +++ YCG G  
Sbjct: 268 LAGKEVIQETLGDLSFELSARAFFQLNPEQTIVLYDEAKKAAALTGDEKIVDAYCGVGTI 327

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V  +++   ++  AR N   +   N K     ++++     +E       
Sbjct: 328 GLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE------- 380

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 +R   I VDPPR+   D     +  
Sbjct: 381 -----GWRPDVIVVDPPRTVAIDKLXETILK 406


>gi|18977544|ref|NP_578901.1| RNA methyltransferase [Pyrococcus furiosus DSM 3638]
 gi|50401622|sp|Q8U1N4|Y1172_PYRFU RecName: Full=Uncharacterized RNA methyltransferase PF1172
 gi|18893255|gb|AAL81296.1| RNA methyltransferase [Pyrococcus furiosus DSM 3638]
          Length = 411

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 146/379 (38%), Gaps = 55/379 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYH 60
              L    Y  QL  K ++LR+++       ++I  S     +R R +  +      +  
Sbjct: 70  GCILQHINYNSQLEFKKEKLRKILGR----EVEIIPSPRIFGHRNRIDLAV-----TVNA 120

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQI 107
           I F ++ K    + ++            +  +   I  E +           LR  + + 
Sbjct: 121 IGFREKGKWWSVVDVEECPVFGKTSKKAIERLREYIEEEKVSTWKIREDSGFLRYMVLRE 180

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
              T +     VT         ++ + A  +  +++  K  +              ++++
Sbjct: 181 GKFTGEIMVNFVTKEGELPDPTSYFDFADSIYWSINRSKSDVSYGDIEK----YWGKEFI 236

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
            E L      + Y    NSF Q N+   V++++ V    +G +  ++++Y G G F + L
Sbjct: 237 MEEL----DGVKYLIHPNSFFQTNSYQAVNLVKTVEKFVEGEK--VVDMYSGVGTFGVYL 290

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+   +V+  +    ++E A  N   N+V     V    +                 +DI
Sbjct: 291 AKKGMKVVGFDSNAFAIEMANKNAEINNVEAEFFVASDRE-----------------VDI 333

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLA 345
               F T+ VDPPR+GL    V  +  +    I+Y+SCNP +   ++  L+  + IE L 
Sbjct: 334 KG--FDTVIVDPPRAGLHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQLNN-YIIEELI 390

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP+T H+E    L R
Sbjct: 391 ALDMFPHTPHIELVGKLRR 409


>gi|190149586|ref|YP_001968111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303249528|ref|ZP_07335735.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251846|ref|ZP_07533747.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307262906|ref|ZP_07544530.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914717|gb|ACE60969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302651602|gb|EFL81751.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860538|gb|EFM92550.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306871811|gb|EFN03531.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 442

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 139/370 (37%), Gaps = 29/370 (7%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDD 57
            G  +     + Q   K   L Q +   Q   +    +       YR RA+  I    + 
Sbjct: 95  GGCQMQHIPLDLQREAKQQALFQRLQKLQSQPIDFQPMIIGNDKGYRRRAKLSIVSQNNQ 154

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           L      Q + + + ++        ++ L I+ + ++      +  L  I+ +  Q+D  
Sbjct: 155 LAIGFRMQNSNQIIPLEQCEVLVEPLSQL-IKPLQSLFSTWQNKKSLGHIELV--QADDT 211

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  LI  R +     + +  L+         + ++   N            E        
Sbjct: 212 ITMLI--RNVGQFHPQDSRNLQQFAERHSLSLYVMTAENDITHLSG-----EAPYYQIHG 264

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           +        F Q N  +N  M++  L       Q  +L+L+CG GNF+L +A+    V+ 
Sbjct: 265 VKLGFSIRDFIQVNGDLNEKMVDKALEWLDLSAQDRVLDLFCGMGNFTLPIAKQAGFVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +P V  A+ N   + + NV   + +  E               D    S  F  + 
Sbjct: 325 VEGVEPMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVL 372

Query: 297 VDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354
           +DP R+G       +    P  I+Y+SCNP +L RD   L    + +++ A+ D FP+T 
Sbjct: 373 LDPARNGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTG 432

Query: 355 HMECGVLLVR 364
           H+E   L  +
Sbjct: 433 HLESISLFTK 442


>gi|121605471|ref|YP_982800.1| 23S rRNA 5-methyluridine methyltransferase [Polaromonas
           naphthalenivorans CJ2]
 gi|254766920|sp|A1VQF1|RUMA_POLNA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|120594440|gb|ABM37879.1| 23S rRNA m(5)U-1939 methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 490

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 128/388 (32%), Gaps = 43/388 (11%)

Query: 12  QQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIW--HDGDDLYHIMFDQ 65
            Q+A K   L   +           L+       HYR RA   +              ++
Sbjct: 110 AQVAVKQRVLEDNLRFIGKVKADNLLRPIEGPAWHYRYRARLSVRYVRKKGTALVGFHER 169

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     +         ++ +++ +   I      R  + QI+        A+V L +  
Sbjct: 170 KSAYVADMTECHVVPQHVSDMLVPLRGLISSMDA-RETIPQIELACGDDLTAMV-LRHME 227

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L  A          A    ++ +Q  G    T   LD    +    +    +       
Sbjct: 228 PLSVADLARLRAFAAANAGLQWWVQSGGL--DTVKLLDAQVAELSYGLPEFGITMPFKPT 285

Query: 186 SFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            FTQ N  IN  ++   L          +++ +CG GNF+L LA     VL +E ++  V
Sbjct: 286 DFTQVNPHINQVLVSRALRLLGVQPTERVIDWFCGLGNFTLPLATRAREVLGIEGSEVLV 345

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             +R N   N  ++     + + +F         F     + +     +   VDPPR G 
Sbjct: 346 ARSRENYERNKASSHVRPALEATKFV----ARNLFEMTPAMLVKDGAAEKWLVDPPREGA 401

Query: 305 DDATVGMVQAYP--------------------------HILYISCNPDSLCRDLSIL--S 336
            +    +   +                            I+Y+SCNP +L RD  +L   
Sbjct: 402 FELFKSLAALHQQVVTGVPCDDGIHQQSLALGGWTPPSRIVYVSCNPATLARDAGVLVEG 461

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             +      + + FP+T H+E   +  R
Sbjct: 462 GGYRCTAAGVVNMFPHTAHVESMAVFER 489


>gi|303257583|ref|ZP_07343595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderiales
           bacterium 1_1_47]
 gi|330999624|ref|ZP_08323333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parasutterella
           excrementihominis YIT 11859]
 gi|302859553|gb|EFL82632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Burkholderiales
           bacterium 1_1_47]
 gi|329574130|gb|EGG55706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parasutterella
           excrementihominis YIT 11859]
          Length = 483

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 132/368 (35%), Gaps = 31/368 (8%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L   +        +   +        YR RA   +        +     ++
Sbjct: 97  AQVAMKQKVLMDALWHIGRVRPEQVLAPIYGSAWRYRHRARLSVREVAKKGTVLVGFHEK 156

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     +         ++ L++ +   I     LR KL QI+   +    A+V  +  +
Sbjct: 157 RSSFIADMKSCEILPKRVSDLLVPLRELINSL-SLRKKLPQIELAVTDEALALVLRVLEK 215

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT----LIYR 181
           L  D       +LR              +   +   +D +    RL +  R     +++R
Sbjct: 216 LTAD----DEAKLRQFQKDYGVDFWYQPKGPDSIYPMDPENAT-RLKLHHRETGVEVVFR 270

Query: 182 QIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
                FTQ N  +N  M+   L          +++ +CG GNF+L LA    +VL +E +
Sbjct: 271 --PTDFTQVNHRLNEVMVTRALRLLHLEPSSKVIDFFCGLGNFTLPLATRSAKVLGIEGS 328

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V+ AR     N++           EF      +   +    +         + +DPP
Sbjct: 329 TELVDRARAGAKDNNL-------ADKTEFEARNLFDWTLDDWDAVWNKLGGVDRVLIDPP 381

Query: 301 RSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
           R G       +    +    ++Y+SCNP +L RD ++L       +    + + FP+T H
Sbjct: 382 REGAMALCRSLADTDKRPARLVYVSCNPATLARDAALLVREGGWKLLSAGVMNMFPHTAH 441

Query: 356 MECGVLLV 363
           +E   +  
Sbjct: 442 VESIAVFE 449


>gi|85858975|ref|YP_461177.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Syntrophus aciditrophicus
           SB]
 gi|85722066|gb|ABC77009.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Syntrophus aciditrophicus
           SB]
          Length = 429

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 138/386 (35%), Gaps = 79/386 (20%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSE-PIHYRMRAEFHIWHDG 55
            G       Y  QL  K +++             P   +  S  P  YR +AEFHI    
Sbjct: 100 GGCQYQHIAYTHQLEIKKNQVIDAFERIGKHPAPPVRDVIASPMPYAYRGKAEFHISFKS 159

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L  I + +                                                +D
Sbjct: 160 GRLPVIGYKE-----------------------------------------------AAD 172

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLT 172
             IV +    ++D++       LR  L+A     +  G+  +  I      +  VD  ++
Sbjct: 173 SRIVPVSRCAIVDESVNRSLTALRGKLNAISAAGRRGGKKEERVILWSDTGKAAVDPGVS 232

Query: 173 VAGRTLIYRQIE--------NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
                L+ R ++          F Q N+ +   M++ V+ A      + +L+ YCG+G F
Sbjct: 233 GGRGGLVMRPVKEKMLRAPFQGFFQANSALVGSMVDSVIRACALTGKETVLDAYCGSGLF 292

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SL LA    ++  V+    +V  A  N++   ++N +       E      R       +
Sbjct: 293 SLFLASSARQLFGVDADGEAVHCAAENLSKEGISNAEFFAGDVGEIL----RHTFLKTQQ 348

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHT 340
            +DI       + +DPPR G     +  ++      I+YISCNP +  RD+  L  + + 
Sbjct: 349 SVDI-------VVLDPPRIGCSSDVLEALKSLGPARIIYISCNPATQARDVRRLRDSGYI 401

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
           +  L   D FP T+H+E   LL R+ 
Sbjct: 402 LRDLQPIDMFPQTKHIEIVGLLEREN 427


>gi|227329295|ref|ZP_03833319.1| 23S rRNA methyluridine methyltransferase [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 375

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 132/382 (34%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL++K   L  ++    V   L +  S    +R +A+  +    +    
Sbjct: 13  SCQWLEKAYPQQLSDKQQHLEGLLPPHAVQRWLPVQPSAQSAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        D           F    + I    +      R    L+  L      
Sbjct: 73  GMLHRDGTAVDLCDCPLYPSSFAPVFDVLKVFIARAGLTPYNVARRRGELKYLLLTESTQ 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
                   V     +L  L  A      +L   L      IQ + +A    KT+I L   
Sbjct: 133 HGTFMLRFVLRSETKLAQLRAALPWLQQQLPQ-LEVISANIQPVHQAIMEGKTEIILSDA 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
                L      +       SF Q N  +   +          +    + +L+CG G F 
Sbjct: 192 AA---LAEQFNQVPLYIRPQSFFQTNPQVAAALYATARDWVAELDITSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    R+  +EI+  ++  AR +     +  V+   + S +F  A            
Sbjct: 249 LHCASPEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +     + V+PPR G+       +   A  +ILY SCN +S+ +D++ L+  +   
Sbjct: 297 ---KAEIPDLVLVNPPRRGIGSELCAYLSRMAPDYILYSSCNAESMAKDMTELAN-YRAL 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LL R
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLKR 374


>gi|300722504|ref|YP_003711794.1| putative tRNA (uracil-5-)-methyltransferase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629011|emb|CBJ89596.1| putative tRNA (uracil-5-)-methyltransferase with
           S-adenosyl-L-methionine-dependent methyltransferase
           domain [Xenorhabdus nematophila ATCC 19061]
          Length = 375

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 138/380 (36%), Gaps = 39/380 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y  QL++K   L+Q++    V   L    S+   +R +A+  +    +    
Sbjct: 13  SCQWLDKSYSHQLSDKQKHLKQLLQETSVTHWLSPVMSKTSGFRNKAKMVVNGSVERPLL 72

Query: 61  IMF--DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M   D +T +      +      +  ++   +A   L P         L+  L      
Sbjct: 73  GMLHRDGRTVDLCDCPLYPQHFQAVFEVIKVFIAKAGLVPYNVERRKGELKYILLTESRA 132

Query: 111 TSQSDQAIVTLIYHRLLDDA-----WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
            ++     V     +L          +E   +L       +     I    K  I   + 
Sbjct: 133 NNEMMLRFVLRSETKLAQLERVLPWLQEQLPQLTVISANIQPTHMAILEGEKEIIFTGQT 192

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
            + E        +       SF Q N  I   +        + +    + +L+CG G F 
Sbjct: 193 MLKETF----NGIPLYIRPRSFFQTNPDIASELYATAGRWVRELNISSMWDLFCGAGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EI+  +++ A+ +  +  + +V+   + S  F     +  E      
Sbjct: 249 LHCADKETKLTGIEISAEAIDCAKSSAKSLGLKSVEFQALDSTHFALEKAKIPEL----- 303

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHIL-YISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR G+       + +  P  + Y SCN +++ +D+++L   + IE
Sbjct: 304 ----------VLVNPPRRGIGKELCEYLSRMAPKFVLYSSCNAETMAKDIAMLKQ-YRIE 352

Query: 343 RLALFDQFPYTRHMECGVLL 362
           ++ LFD FP+T H E   LL
Sbjct: 353 KVQLFDMFPHTEHYETLALL 372


>gi|84367352|dbj|BAE68510.1| RNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 418

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 138/374 (36%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 62  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPGLTGDNWGYRRKGRFSVRRVEKK 121

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   +   +    +         I   +  ++A +      +  + QI+++    D
Sbjct: 122 AKTLVGFRELDPRFVADLSVCYTVIPQIGEKIP-LLAALVEGMDGKRDIPQIEFIAG-DD 179

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L    ++  I      H     +Q  G  +   +      +  RL    
Sbjct: 180 AVALTIRHMQPLSARDQQAWIAFAQE-HGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWD 238

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V
Sbjct: 239 VDLAFR--PLDFIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREV 296

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 297 VGVEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDK 344

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 345 LLLDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 404

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 405 HTAHVESIAVFERR 418


>gi|50401526|sp|Q7W676|RUMA_BORPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 466

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 137/370 (37%), Gaps = 37/370 (10%)

Query: 12  QQLAEKVDRLRQMM---LAFQVPNL-QIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L          +   +          YR RA   +        +     ++
Sbjct: 85  AQVAIKQRALEDTFWHVGKLKPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHER 144

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     +         ++ L++ + A I        ++ QI+      D+AIV ++ H 
Sbjct: 145 KSSYVADMRECHVLPPAVSRLLLPLRAMIAAMSA-PDRMPQIEVALG--DEAIVLVLRHL 201

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---ERLTVAGRTLIYRQ 182
           L         +R   A H  ++ +Q   +   T   L+R++ D     L   G  + YR 
Sbjct: 202 LPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYTLPEFGLRMPYR- 258

Query: 183 IENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
               FTQ N  IN  M+   L       Q  + +L+CG GNF+L LA      + VE +K
Sbjct: 259 -PTDFTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSK 317

Query: 242 PSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              + A    A + +    +   ++  E      R   +            F  + +DPP
Sbjct: 318 ALTDRAHEAAARHGLGERTRFATLNLFEVDVQWLRGLGY------------FDRMLIDPP 365

Query: 301 RSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353
           R G       +    P      I+Y+SCNP +L RD +I+     + +    + + FP+T
Sbjct: 366 REGAQAVVQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHEGGYALRSAGVINMFPHT 425

Query: 354 RHMECGVLLV 363
            H+E   +  
Sbjct: 426 GHVESIAVFE 435


>gi|33597587|ref|NP_885230.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella
           parapertussis 12822]
 gi|33574015|emb|CAE38338.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 484

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 137/370 (37%), Gaps = 37/370 (10%)

Query: 12  QQLAEKVDRLRQMM---LAFQVPNL-QIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L          +   +          YR RA   +        +     ++
Sbjct: 103 AQVAIKQRALEDTFWHVGKLKPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHER 162

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     +         ++ L++ + A I        ++ QI+      D+AIV ++ H 
Sbjct: 163 KSSYVADMRECHVLPPAVSRLLLPLRAMIAAMSA-PDRMPQIEVALG--DEAIVLVLRHL 219

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---ERLTVAGRTLIYRQ 182
           L         +R   A H  ++ +Q   +   T   L+R++ D     L   G  + YR 
Sbjct: 220 LPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYTLPEFGLRMPYR- 276

Query: 183 IENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
               FTQ N  IN  M+   L       Q  + +L+CG GNF+L LA      + VE +K
Sbjct: 277 -PTDFTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSK 335

Query: 242 PSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              + A    A + +    +   ++  E      R   +            F  + +DPP
Sbjct: 336 ALTDRAHEAAARHGLGERTRFATLNLFEVDVQWLRGLGY------------FDRMLIDPP 383

Query: 301 RSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353
           R G       +    P      I+Y+SCNP +L RD +I+     + +    + + FP+T
Sbjct: 384 REGAQAVVQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHEGGYALRSAGVINMFPHT 443

Query: 354 RHMECGVLLV 363
            H+E   +  
Sbjct: 444 GHVESIAVFE 453


>gi|320580356|gb|EFW94579.1| tRNA methyltransferase [Pichia angusta DL-1]
          Length = 544

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 82/408 (20%), Positives = 153/408 (37%), Gaps = 76/408 (18%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRA--- 47
           SG      +Y+ QL  K   +      F          P +    + P    YR +    
Sbjct: 171 SGCQYQPIEYDDQLNFKRQTIINAYRYFAPRLTSMGKLPEVGATVASPLKYGYRTKLTPH 230

Query: 48  -EFHIWHDGDDLYHIMFDQQTK-------------ERMRIDYFMPGSLLINALMIEMMAT 93
            +F    D     +  F  + +             E M I+  + G+ ++   +    A 
Sbjct: 231 YQFSRHQDPSVRPNFGFGSKGRPSWRDVPKREYPGEVMDIEDCIIGTDIVRQGLKNERAR 290

Query: 94  IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL---HARKYQIQ 150
           +        KL Q   +             H+      RE   R ++ L         + 
Sbjct: 291 LE-------KLIQSGQV------------KHKGATVLLREDTRRNQEELKGSTTEDGTLS 331

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATK 207
           +I + +  K C+  +     ++     L +  + N F Q N  I   +L++V   LA  +
Sbjct: 332 IIEQDDMFKTCVTDNNAI--VSEYVNGLRFDFVANEFFQNNNSILPKVLDYVKSNLALDE 389

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                L++ YCG+G FS+  A    + L VEI+  S++ A+ N+  N ++N + +   ++
Sbjct: 390 SGDSYLVDAYCGSGLFSISCASSVRKSLGVEISAHSIKFAKRNVELNDIHNCEFIEGKAE 449

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325
           +  + +   ++               ++ +DPPR G D+  +  +  +    I+Y+SCN 
Sbjct: 450 KLFEKIDFPKD-------------KTSVILDPPRKGCDEVFLRQLAEFYPKRIVYVSCNV 496

Query: 326 DSLCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            S  RD+            + +E +  FD FP T H+E   +L R  S
Sbjct: 497 HSQARDVEYFLTETEKGKDYKVESIIGFDFFPQTHHVEGVAVLSRATS 544


>gi|32033638|ref|ZP_00133949.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207796|ref|YP_001053021.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|126096588|gb|ABN73416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 442

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 136/358 (37%), Gaps = 28/358 (7%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Q   K   L Q +   Q   +    +       YR RA+  I    + L      Q + +
Sbjct: 107 QREAKQQALFQRLQKLQSQPIDFQPMIIGNDKGYRRRAKLSIASQNNQLAIGFRMQNSNQ 166

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            + ++        ++ L I+ + ++      +  L  I+ +  Q+D  I  LI  R +  
Sbjct: 167 IIPLEQCEVLVEPLSQL-IKPLQSLFSTWQNKKSLGHIELV--QADDTITMLI--RNVGQ 221

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
              + +  L+         + ++   N            E        +        F Q
Sbjct: 222 FHPQDSRNLQQFAERHSLSLYVMTAENDITHLSG-----EAPYYQIHGVKLGFSIRDFIQ 276

Query: 190 PNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            N  +N  M++  L       Q  +L+L+CG GNF+L +A+    V+ VE  +P V  A+
Sbjct: 277 VNGDLNEKMVDKALEWLDLSAQDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVEPMVAQAK 336

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   + + NV   + +  E               D    S  F  + +DP R+G     
Sbjct: 337 QNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPARNGAFFCL 384

Query: 309 VGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +    P  I+Y+SCNP +L RD   L    + +++ A+ D FP+T H+E   L  +
Sbjct: 385 DHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESISLFTK 442


>gi|307545603|ref|YP_003898082.1| 23S rRNA 5-methyluridine methyltransferase [Halomonas elongata DSM
           2581]
 gi|307217627|emb|CBV42897.1| 23S rRNA 5-methyluridine methyltransferase [Halomonas elongata DSM
           2581]
          Length = 483

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 87/382 (22%), Positives = 145/382 (37%), Gaps = 28/382 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
              L     E Q   K + LR+++            +       YR RA   +  D +  
Sbjct: 111 GCDLQHLSLEAQRDHKREVLRELLARQGIELPGASSLLADAGEGYRRRARIGVRVDSNGQ 170

Query: 59  YHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
             + F  + +   + +D        +++L+  +   +      R     + +L   +   
Sbjct: 171 VRLGFRARHSHRLVDLDDCPVLLPALSSLLRPLREQVESLEAPRH----VGHLELLASDG 226

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
            VTL+  +L +    +   R             L   + + +       +  RLT   RT
Sbjct: 227 AVTLVVRQLREHVADQRRWRAFAEAQGLHLGAWLGRESPRFEWLTPPPALHCRLTAGRRT 286

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA------TKGIQGDLLELYCGNGNFSLVLARHF 231
           L+     + F Q N  +N  M++  L+              +L+L+ G GNFSL LA   
Sbjct: 287 LVLGLEPSDFLQANEAVNQRMVDTALSWLAPALSPVAPGTRVLDLFAGIGNFSLPLATQG 346

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V AVE +   VE    N A N V     V     +   A    R         + +  
Sbjct: 347 AEVSAVEGSTAMVERLAGNAARNQVA----VTARQADLNDAEACRRL--------LATTA 394

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
            + + +DPPRSG +     +V+   P +LYISC+P +L RD + L S  + + R A+ D 
Sbjct: 395 PEVLVLDPPRSGAEALCRQLVEHPVPWVLYISCDPATLARDAAWLVSAGYVVRRSAVADM 454

Query: 350 FPYTRHMECGVLLVRKPSGWHQ 371
           F +T H+E  +LL    S   Q
Sbjct: 455 FAHTSHLESMLLLEHPDSARRQ 476


>gi|91207815|sp|Q3BVV1|RUMA_XANC5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
          Length = 444

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 140/374 (37%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 88  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  + A +      +  + QI+++    D
Sbjct: 148 DKTLVGFRELDPRFVADLSICYTVIPQIGEKIP-LFAALIEGMDGKRDIPQIEFIAG-DD 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L +  R+  +      H     +Q  G  +   +      +  RL    
Sbjct: 206 AVALTIRHMQPLSERDRQAWVAFAQE-HGFAIFLQPGGVDSVHPLWPQDVPLSFRLPQWE 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   +A  +    D +L+L+CG GNF+L LAR    V
Sbjct: 265 VELAFR--PLDFIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 323 VGVEGDAGLVARAKENAQRNGLDNAQFH---AADLTQDQRSAPWMRQ---------GFDK 370

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 371 LLLDPPRSGALEVLQQLPLKTFDRIVYVSCHPGSLARDAGYLVNDQGFTLVCAGAMDMFP 430

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 431 HTAHVESIAVFERR 444


>gi|58581482|ref|YP_200498.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58426076|gb|AAW75113.1| RNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 479

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 138/374 (36%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 123 GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALSGDNWGYRRKGRFSVRRVEKK 182

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   +   +    +         I    I ++A +      +  + QI+++    D
Sbjct: 183 AKTLVGFRELDPRFVADLSVCYTVIPQIGE-NIPLLAALVEGMDGKRDIPQIEFIAG-DD 240

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L    ++  I      H     +Q  G  +   +      +  RL    
Sbjct: 241 AVALTIRHMQPLSARDQQAWIAFAQE-HGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWD 299

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V
Sbjct: 300 VDLAFR--PLDFIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREV 357

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 358 VGVEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDK 405

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 406 LLLDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 465

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 466 HTAHVESIAVFERR 479


>gi|315230888|ref|YP_004071324.1| TrmA-like RNA methyltransferase [Thermococcus barophilus MP]
 gi|315183916|gb|ADT84101.1| TrmA-like RNA methyltransferase [Thermococcus barophilus MP]
          Length = 420

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 149/378 (39%), Gaps = 45/378 (11%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
            G L    +Y++QL  K +  R++     +        +   +R  + F +   G     
Sbjct: 73  GGCLWQHIRYKEQLKLKQENFRKIT---GIATDIKGSPKLFGFRNSSNFIVTTQGIGFKE 129

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLT----S 112
                     + +      S      +  +   ++ E L    L+ K   + YL+     
Sbjct: 130 YARPLS---IVDVKECPVFSNKTWDYLKTLKEFMKEENLKAWDLKRKRGDVHYLSVREGK 186

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIR---LRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
            +D+ +++LI H   ++   E         D+L+      +      + K+   + Y+ E
Sbjct: 187 STDEVMISLIAHIKPNEKLAEAFRDYFYFADSLYWSFKADKRDDPKGEPKLIAGKPYISE 246

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
           R+      ++Y    NSF Q N+     +L+     T+G +  +L+LY G G F + LA+
Sbjct: 247 RIG----DVVYLIHPNSFFQANSYALPLLLKAAEGFTEGEK--ILDLYSGLGTFGIWLAK 300

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V  VE    +VE A  N   N V+ V      ++E                     
Sbjct: 301 RGFKVEGVEANPFAVEMANKNAKLNGVDAV-FRLGKAEETA------------------I 341

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLS-ILSTTHTIERLALF 347
             + T  VDPPR GL +    + ++   +I+Y+SCNP +   D    L   + IE   L 
Sbjct: 342 GDYDTAVVDPPRKGLKETAELLAKSNVENIIYVSCNPKAFKLDYENHLKKAYQIEDALLI 401

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP+T H+E  V LVRK
Sbjct: 402 DMFPHTPHVEAVVKLVRK 419


>gi|57641051|ref|YP_183529.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
 gi|57159375|dbj|BAD85305.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus kodakarensis
           KOD1]
          Length = 421

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 145/376 (38%), Gaps = 41/376 (10%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEPIHYRMRAEFHIWHDGDDLY 59
            G L    +Y++QL  KV    ++       +  I    +   +R  + F +   G  L 
Sbjct: 74  GGCLWQGLKYKEQLRLKV----ELFEKITGISADIKGSPKVWGFRNVSNFIVSTTGIGLK 129

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-LRAKLFQIDYLTSQSD--- 115
                   ++      F   +L     +   +A   L+P  L+ K   + YL  +     
Sbjct: 130 KYGNPFDVEDLFECPVFSEKTLDYLRALRSFLAETGLKPWDLKRKTGDVHYLQVREGKFT 189

Query: 116 -QAIVTLIYHRLLDDAWRECAIR---LRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            + +V LI H        E  +      D+L+      +      + ++     Y+ ER+
Sbjct: 190 REIMVNLISHSPPSPNTTEAFLGYFSFADSLYWSVKTDKRDDPRGEPQLIGGSPYIHERI 249

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
                 + Y    NSF Q N+     +++ V          +L+LY G G F + LA+  
Sbjct: 250 G----EVTYLIHPNSFFQTNSYALPLLIKAV--ENFASGEMILDLYAGVGTFGVWLAKRR 303

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V  +E+   +VE A  N   N+V+        ++E                      +
Sbjct: 304 FQVEGIELNPFAVEIANKNAEINNVD-ATFKVGRAEET------------------PIGK 344

Query: 292 FKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQ 349
           + T+ VDPPR GL +    + ++    ++Y+SCNP +   D    L   +TIE   L D 
Sbjct: 345 YDTVVVDPPRKGLKEVAETLARSEIGKVVYVSCNPKAFKLDYENHLKKAYTIEDAVLIDM 404

Query: 350 FPYTRHMECGVLLVRK 365
           FP+T H+E  + L RK
Sbjct: 405 FPHTPHVEAVISLKRK 420


>gi|253688084|ref|YP_003017274.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259495633|sp|C6DEQ3|RUMB_PECCP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|251754662|gb|ACT12738.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 376

 Score =  200 bits (508), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 133/383 (34%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL++K   L  ++    V   L +  S    +R +A+  +    +    
Sbjct: 13  SCQWLEKAYPQQLSDKQQHLEGLLQPHAVQRWLPVQPSAQSAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        D           F    + I    +      R    L+  L      
Sbjct: 73  GMLHRDGTAVDLCDCPLYPSSFASVFDVLKVFIARAGLTPYNVARRRGELKYLLLTESTQ 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
                   V     +L  L  A      +L   L      IQ + +A    KT+I L   
Sbjct: 133 RGTFMLRFVLRSETKLAQLRAALPWLQQQLPQ-LEVISANIQPVHQAIMEGKTEIILSEA 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
                L      +       SF Q N  +   +          +    + +L+CG G F 
Sbjct: 192 AA---LAEQFNQVPLYIRPQSFFQTNPQVAAALYATARDWVAELNITSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    R+  +EI+  ++  AR +     +  V+   + S +F               
Sbjct: 249 LHCASPEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFATG------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +   + + V+PPR G+       +   A  +ILY SCN +S+ +D++ L+  +   
Sbjct: 297 ---KAEIPELVLVNPPRRGIGSELCTYLSRMAPDYILYSSCNAESMAKDMTELTN-YRAL 352

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+ LFD FP+T H E   LL R+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLKRE 375


>gi|153828064|ref|ZP_01980731.1| putative TrmA family RNA methyltransferase [Vibrio cholerae 623-39]
 gi|148876473|gb|EDL74608.1| putative TrmA family RNA methyltransferase [Vibrio cholerae 623-39]
          Length = 375

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 146/383 (38%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y +Q+  K  +LR+++     V  L    S  I +R +A+  +         
Sbjct: 13  SCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADIAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            + D Q +    +    +      + A +   +    + P         L+  L      
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTQSEN 132

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECA--IRLRDALHARKYQIQLIGRAN---KTKICLDRD 165
           + Q     V    H +L+   R           +      IQ +  A    + +I L + 
Sbjct: 133 SGQFMLRFVAR-SHAVLERIERNLPMLTAAFPMIEVISVNIQPVHMARLEGEEEIFLTK- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
              + L      +       SF Q N  +   +     A  + I    + +L+CG G F+
Sbjct: 191 --TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFA 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E      
Sbjct: 249 LHCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL----- 303

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + 
Sbjct: 304 ----------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMAKDIAELAS-YQMI 352

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+  FD FP+T H E   LLVRK
Sbjct: 353 RVQWFDMFPHTDHAEVLTLLVRK 375


>gi|188577277|ref|YP_001914206.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188521729|gb|ACD59674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 418

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 138/374 (36%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 62  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKK 121

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   +   +    +         I   +  ++A +      +  + QI+++    D
Sbjct: 122 AKTLVGFRELDPRFVADLSVCYTVIPQIGEKIP-LLAALVEGMDGKRDIPQIEFIAG-DD 179

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L    ++  I      H     +Q  G  +   +      +  RL    
Sbjct: 180 AVALTIRHMQPLSARDQQAWIAFAQE-HGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWD 238

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V
Sbjct: 239 VDLAFR--PLDFIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREV 296

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 297 VGVEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GFDK 344

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 345 LLLDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 404

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 405 HTAHVESIAVFERR 418


>gi|258625542|ref|ZP_05720431.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM603]
 gi|258582186|gb|EEW07046.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio mimicus VM603]
          Length = 375

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 148/382 (38%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S       Y QQ+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHQCAQPYSQQVENKDQQLRELIAPVMDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQALLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPTLIAAFPTIEVVSVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LL+RK
Sbjct: 354 VQWFDMFPHTDHAEVLTLLIRK 375


>gi|166712829|ref|ZP_02244036.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 444

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 137/374 (36%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        E   YR +  F +      
Sbjct: 88  GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGENWGYRRKGRFSVRRVEKK 147

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   +   +    +         I   +  ++A +      +  + QI+++    D
Sbjct: 148 AKTLVGFRELDPRFVADLSVCYTVIPQIGEKIP-LLAALVEGMDGKRDIPQIEFIAG-DD 205

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L    ++  I      H     +Q  G  +   +      +  RL    
Sbjct: 206 AVALTIRHMQPLSARDQQAWIAFAQE-HGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWD 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   LA       D +L+L+CG GNF+L LAR    V
Sbjct: 265 VDLAFR--PLDFIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREV 322

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +             
Sbjct: 323 VGVEGDAGLVARAKDNAQRNGLDNAQFY---AADLTQDQRNAAWMRQ---------GLDK 370

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 371 LLLDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFP 430

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 431 HTAHVESIAVFERR 444


>gi|296134904|ref|YP_003642146.1| RNA methyltransferase, TrmA family [Thiomonas intermedia K12]
 gi|295795026|gb|ADG29816.1| RNA methyltransferase, TrmA family [Thiomonas intermedia K12]
          Length = 474

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 77/402 (19%), Positives = 127/402 (31%), Gaps = 66/402 (16%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIW--HDGDDLYHIMFDQ 65
            QLA K   L            Q+           YR RA   +        +     ++
Sbjct: 89  AQLAFKQRILEDDFWHLSRLKPQLLLRPIAGPNWGYRTRARLTVRLVVKKGGVLVGFHEK 148

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            +     +         ++ L++ +   I        +  QI+         +V     R
Sbjct: 149 GSSYVADMRSCEVLPRAVSDLLLPLRELIAGL-SRPERAPQIELAMGDRVTVLVL----R 203

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L+        RLRD       Q  L  +   +   LD D       +    ++      
Sbjct: 204 HLEPLTDADRQRLRDFGQQHGVQWWLQPKGPDSVAPLDPDAEPLSYALPEFGIVMPFRPT 263

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            FTQ N  IN  M+   L      + D +++ +CG GNF+L +A    +VL VE +   V
Sbjct: 264 DFTQVNPQINRVMVARALRLLGARRTDRVIDWFCGLGNFTLPIATQARQVLGVEGSATLV 323

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSG 303
             A  N   N + +  +               R    +   D+ +Y       VDPPR G
Sbjct: 324 ARALDNALHNDLQDKVVFTA------------RNLFEMDADDLRAYGEADLWLVDPPRDG 371

Query: 304 LDDATVGMVQA---------------------------------------YPHILYISCN 324
                  + +A                                          I+Y+SCN
Sbjct: 372 ALALCKALAEAVNGPLGAPGEEETRAAGEASAAPKPVAPPVVPAVAPFKPPRRIVYVSCN 431

Query: 325 PDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
           P +L RD  +L     +T+    + + FP+T H+E   +  R
Sbjct: 432 PATLARDAGLLVHQAGYTLRAAGVMNMFPHTAHVESMAVFER 473


>gi|62185452|ref|YP_220237.1| putative RNA methyltransferase [Chlamydophila abortus S26/3]
 gi|62148519|emb|CAH64290.1| putative RNA methyltransferase [Chlamydophila abortus S26/3]
          Length = 401

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 64/396 (16%), Positives = 153/396 (38%), Gaps = 44/396 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEPI-HYRMRAEFHIW--HDGD 56
             +     Y   L  K   L ++       +  L I   +P+   R + EF  +   +G+
Sbjct: 15  GCSSPHSAYADSLKAKERILHELFAPIFPASDILPIIPCDPLLRGRNKMEFSFFQTKEGE 74

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--------RAKLFQID 108
                +   + K+ + I   +        ++          P +        +  L  + 
Sbjct: 75  KSLGFITPTKPKQGIPITECLMIHEHAMDILEITRTWWDRHPEITAYYPPFNKGSLCTLT 134

Query: 109 YLTSQSDQAIVTLIYH---------RLLDDAWRECAIR----LRDALHARKYQIQLIGRA 155
                 +  ++ ++           + + + W+   +     +   +   +   + +   
Sbjct: 135 VRIGSPEHTLMVILTTSAREEYAVDKKIIEEWKTLLLDSDLPIVSIVWEERVSAKNVPTY 194

Query: 156 NKTKICLDRDYVDER--LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
            ++ +     ++ ++  L   G + ++     SF QP       ++E         + + 
Sbjct: 195 FRSNLLYGEAFIQQKFVLPKDGNSAVFHVRPRSFFQPQTLQGAKIIEVAKEFMDPQRSET 254

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   ++L+++  +V+ VEI   ++++A+ NI  N   ++  V +  ++    
Sbjct: 255 LLDLYCGAGTIGIMLSQYVKKVIGVEIVPDAIDSAKENILINKKEHLMEVHL--EDVKTF 312

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD-SLC 329
            +R ++                  +DPPR G+ +  +  +   A   I+YISCNP     
Sbjct: 313 CKRYQDHP----------SPDVAIIDPPRCGIQNKVLKYLIRIAPRKIIYISCNPKIQFV 362

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              S+++  + ++++   DQFP++ H+E  +LL R+
Sbjct: 363 ECYSLIAAGYRMKKVQPLDQFPHSPHLENIILLERE 398


>gi|237730842|ref|ZP_04561323.1| 23S rRNA(M-5-U747)-methyltransferase [Citrobacter sp. 30_2]
 gi|226906381|gb|EEH92299.1| 23S rRNA(M-5-U747)-methyltransferase [Citrobacter sp. 30_2]
          Length = 375

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 135/382 (35%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +      QL EK   L+ ++  + V             +R +A+  +    +    
Sbjct: 13  SCQWITQPVADQLFEKTADLQNLLAEYPVGEWCAPVSGPESAFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + + +   +A   L P      R +L  +    S+ 
Sbjct: 73  GMLHRDGTPEDLCDCPLYPESFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTESRY 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSDAKMAQLRAALPWLQAQLPQ-LKVITANIQPVHMAIMEGETEIFLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 191 --QQALAERFNDVPLWIRPQSFFQTNPVVAGQLYATARDWVRQLPVNHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ +     + N+    + S +F  A            
Sbjct: 249 LHCATPQMKLTGIEIAPEAITCAKQSAQELGLQNLHFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR G+       + +  P  I+Y SCN  ++ +D+  L   + IE
Sbjct: 297 ---QGEVPDLVLVNPPRRGIGKPLCDFLSRMAPRYIVYSSCNAQTMAKDIREL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LL R
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLSR 374


>gi|261821243|ref|YP_003259349.1| 23S rRNA methyluridine methyltransferase [Pectobacterium wasabiae
           WPP163]
 gi|261605256|gb|ACX87742.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pectobacterium
           wasabiae WPP163]
          Length = 375

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 135/382 (35%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL++K   L  ++ +  V   L +  S    +R +A+  +    +    
Sbjct: 13  SCQWLEKAYPQQLSDKQQHLEGLLQSHAVQRWLPVQPSVQSAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRIDY------FMPGSLL----INALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        D       F+P   +    I    +      R    L+  L      
Sbjct: 73  GMLHRDGTAVDLCDCPLYPSSFLPAFDVLKAFIARAGLTPYNVARRRGELKYLLLTESTQ 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
                   V     +L  L  A      +L   L      IQ + +A    KT+I L   
Sbjct: 133 RGTFMLRFVLRSETKLAQLRVALPWLQQQLPQ-LEVISVNIQPVHQAIMEGKTEIILSDA 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
                L      +       SF Q N  +   +          +    + +L+CG G F 
Sbjct: 192 AA---LAEQFNQVPLYIRPQSFFQTNPQVAATLYATARDWVAELNITSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    R+  +EI+  ++  AR +     +  V+   + S +F  A            
Sbjct: 249 LHCASPEMRLTGIEISAEAIACARRSAEQLGLKQVEFQALDSTQFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               S     + V+PPR G+       +   A  +ILY SCN +S+ +D++ L+  +   
Sbjct: 297 ---KSEIPDLVLVNPPRRGIGSELCAYLSRMAPDYILYSSCNAESMAKDMTELAN-YRAL 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           R+ LFD FP+T H E   LL R
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLKR 374


>gi|187478468|ref|YP_786492.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella avium 197N]
 gi|123514823|sp|Q2L016|RUMA_BORA1 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|115423054|emb|CAJ49585.1| 23s rRNA (uracil-5-)-methyltransferase [Bordetella avium 197N]
          Length = 476

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 131/370 (35%), Gaps = 37/370 (10%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L            Q            YR RA   +        +     ++
Sbjct: 86  SQVAIKQRALEDTFWHVGKIRPQRVLPPLHGPTWGYRYRARLSVRVVPKKGGVLVGFHER 145

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     +         ++ L++ + A I        ++ QI+    +   A+V     R
Sbjct: 146 KSSYVADMRECHVLPRHVSDLLLPLRAMIAAL-SRPERIPQIEVALGEGVTALVL----R 200

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---ERLTVAGRTLIYRQ 182
            ++         LRD       Q  L  +   T   LD  + D     +   G  + YR 
Sbjct: 201 HIEPLNDHDITVLRDFAARHNVQWWLQSKGPDTVHPLDPAHGDTLAYTMPEFGLRMPYR- 259

Query: 183 IENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
               FTQ N  IN  M+   L          + +L+CG GNF+L LA      + VE +K
Sbjct: 260 -PTDFTQVNHAINRSMVSRALKLLEVQPTDRVADLFCGLGNFTLPLATQGREAVGVEGSK 318

Query: 242 PSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              + A    A + +    +   ++  E   +  R   +            F  + +DPP
Sbjct: 319 ALTDRALEAAARHGLEGRTRFATLNLFEVDVSWLRGLGY------------FDRMLIDPP 366

Query: 301 RSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353
           R G       + Q  P      I+Y+SCNP +L RD +I+     + ++   + + FP+T
Sbjct: 367 REGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVHEGGYVLKAAGVINMFPHT 426

Query: 354 RHMECGVLLV 363
            H+E   +  
Sbjct: 427 GHVESIAVFE 436


>gi|168466499|ref|ZP_02700361.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|195630967|gb|EDX49553.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
          Length = 376

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLALLRR 374


>gi|167550411|ref|ZP_02344168.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205324510|gb|EDZ12349.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 375

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKSFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLALLRR 374


>gi|50302631|ref|XP_451251.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640382|emb|CAH02839.1| KLLA0A05665p [Kluyveromyces lactis]
          Length = 578

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 91/412 (22%), Positives = 142/412 (34%), Gaps = 78/412 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPI--HYRMRA---- 47
              L    YE QLA K   +      F          P +      P+   YR +     
Sbjct: 195 GCQLQYLTYEDQLAFKKRTVMNAYKFFAPRLMEDKLVPEIGETMRSPLEIGYRTKLTPHF 254

Query: 48  -------------EFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI 94
                             H G   +    D  +   + I+  + G+ +IN  M    A  
Sbjct: 255 DLPKRMKGNGERPALGFGHKGRPQWRGNADGGSGPMLDIEECIIGTKIINQGMTNERARF 314

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL---RDALHARKYQIQL 151
             E             T  +  A + L  H  + D     A +L    + +  +   +Q+
Sbjct: 315 ERE------------FTKYNKGATILLREHTKVIDPEIPVAEQLDDGSEDIEGKISYLQI 362

Query: 152 IGRAN-----KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA- 205
               N     KT +   R  V E +        ++     F Q N  I   +  +V    
Sbjct: 363 NDEENDKSLVKTCVTNTRQIVTEYI----NGYTFQFSAGEFFQNNNSILPSVTAYVRKNL 418

Query: 206 -----TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                       L++ YCG+G FS+  ++  DRV+ VE++  SV  A  N  AN V N K
Sbjct: 419 QIEGSKPEDPHYLVDAYCGSGLFSITSSKGVDRVIGVEVSADSVAFAERNAKANGVENCK 478

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHI 318
            +   +++   ++                    ++ +DPPR G DD  +  +  Y    I
Sbjct: 479 FIVGKAEKIFGSID-------------TPCDRTSVILDPPRKGCDDIFMKQLAEYNPARI 525

Query: 319 LYISCNPDSLCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +YISCN  S  RD+            + IE L  FD FP T H+E   +L R
Sbjct: 526 VYISCNVHSQARDVEYFLKETENGKHYKIESLRGFDFFPQTHHVESVCVLSR 577


>gi|329943219|ref|ZP_08291993.1| tRNA (Uracil-5-)-methyltransferase family protein [Chlamydophila
           psittaci Cal10]
 gi|332287799|ref|YP_004422700.1| putative tRNA(Uracil-5-)-methyltransferase protein [Chlamydophila
           psittaci 6BC]
 gi|313848371|emb|CBY17375.1| putative RNA methyltransferase [Chlamydophila psittaci RD1]
 gi|325507335|gb|ADZ18973.1| putative tRNA(Uracil-5-)-methyltransferase protein [Chlamydophila
           psittaci 6BC]
 gi|328814766|gb|EGF84756.1| tRNA (Uracil-5-)-methyltransferase family protein [Chlamydophila
           psittaci Cal10]
 gi|328915057|gb|AEB55890.1| RNA methyltransferase, TrmA family [Chlamydophila psittaci 6BC]
          Length = 401

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 66/398 (16%), Positives = 154/398 (38%), Gaps = 44/398 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEPI-HYRMRAEFHIW--HDGD 56
             +     Y   L  K   L ++       +  L I    P+   R + EF  +   +G+
Sbjct: 15  GCSSPHSAYSDSLKAKERILHELFAPIFPASDILPIIPCHPLLRGRNKMEFSFFQTKEGE 74

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL--------RAKLFQID 108
                +   + K+ + I   +        ++       +  P +        +  L  + 
Sbjct: 75  KSLGFITPTKPKQGIPITECLMIHEHAMDILEITRTWWKHHPEITAYYPPFNKGSLCTLT 134

Query: 109 YLTSQSDQAIVTLIYH---------RLLDDAWRECAIR----LRDALHARKYQIQLIGRA 155
                 +  ++ ++           + + + W+   I     +   +   +   + +   
Sbjct: 135 VRIGSPEHTLMVILTTSAREEYAVDKKIIEEWKNMLIHSDLPIVSIVWEERVSAKSVPTY 194

Query: 156 NKTKICLDRDYVDERLTVAG--RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD- 212
            ++ +     ++ ++L++     + ++     SF QP       ++E           + 
Sbjct: 195 FRSNLLYGEAFIKQKLSLPKDGNSAVFHVRPRSFFQPQTLQGAKIIEIAKEFMDPQGSET 254

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+LYCG G   ++L+++  +V+ VEI   +V++A+ NI  N   ++  V +  ++    
Sbjct: 255 LLDLYCGAGTIGIMLSKYVKKVIGVEIVPDAVDSAKENILINKKESLIEVHL--EDVKTF 312

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPD-SLC 329
            +R ++                  +DPPR G+ +  +  +   +   I+YISCNP     
Sbjct: 313 CKRHQDHP----------APDVAIIDPPRCGMQNKVLKYLIRISPKKIIYISCNPKIQFE 362

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
              S++S  + I+++   DQFP++ H+E  +LL R+ +
Sbjct: 363 ECCSLISAGYRIKKVQPLDQFPHSPHLENIILLEREGN 400


>gi|308186221|ref|YP_003930352.1| hypothetical RNA methyltransferase ybjF [Pantoea vagans C9-1]
 gi|308056731|gb|ADO08903.1| hypothetical RNA methyltransferase ybjF [Pantoea vagans C9-1]
          Length = 376

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 142/382 (37%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y  QL +K  +L Q++    V + L    S    +R +A+  +    +    
Sbjct: 13  SCQWLEKPYPIQLNDKQSQLEQLLAEQPVADWLPPVTSAQQAFRNKAKMVVSGSVERPVL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            +  +  +  +      +      + A +   +A   L P      R +L  +    SQ 
Sbjct: 73  GLVHRDGEPVDLCNCPLYPASFQPVFAALKPFIARAGLTPYNVARKRGELKFLLITESQQ 132

Query: 115 DQAIVTLI-----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
              ++  +         L  A      +L   L      IQ +  A    + +I L  D 
Sbjct: 133 GGVMLRFVLRSTAKLEQLRAALPWLQQQLPQ-LAVISANIQPVHMAILEGEEEIALTPD- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + +    + +L+CG G F L
Sbjct: 191 --QSLAENFNGVPLWIRPQSFFQTNPQVASALYATARDWVRALPVNSMWDLFCGVGGFGL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     +  +EI+  +++ AR +     +  V+   + S  F                
Sbjct: 249 HCATPEMELTGIEISAEAIKCARRSAEMLGLEKVQFAALDSTAFATG------------- 295

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                  + + V+PPR G+ +A    +   A  ++LY SCNP ++ +D++ L+  + + +
Sbjct: 296 --RDAVPQLVLVNPPRRGMGEALCDYLSQMAPDYLLYSSCNPQTMAQDIARLND-YEVTK 352

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           + LFD FP+T H E   LL R+
Sbjct: 353 VQLFDMFPHTAHFEVLTLLTRR 374


>gi|254224762|ref|ZP_04918378.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V51]
 gi|125622825|gb|EAZ51143.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V51]
          Length = 377

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 149/383 (38%), Gaps = 37/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y +Q+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q++    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQSQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECA--IRLRDALHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R           +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPMLTAAFPMIEVISVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRKP 366
           +  FD FP+T H E   LLVRK 
Sbjct: 354 VQWFDMFPHTDHAEVLTLLVRKD 376


>gi|308233546|ref|ZP_07664283.1| RNA methyltransferase, TrmA family protein [Atopobium vaginae DSM
           15829]
 gi|328944339|ref|ZP_08241803.1| TrmA family RNA methyltransferase [Atopobium vaginae DSM 15829]
 gi|327491258|gb|EGF23033.1| TrmA family RNA methyltransferase [Atopobium vaginae DSM 15829]
          Length = 449

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 135/375 (36%), Gaps = 43/375 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ---------IFRSEPIHYRMRAEFHIWHDGDDLYH 60
           Y++QL  K   +   ++                 I   +   YR + E     + ++ Y 
Sbjct: 92  YDEQLKAKKANVVDALIRTAHIEADEAQTLVRDVIPSKKQWGYRNKIELSASTEHNNFYL 151

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDYLTSQSDQAIV 119
            M+D   K  +++          + L   +   ++ +       + +I   TS   + + 
Sbjct: 152 GMYDPIQKRLVQVLSCALVDKRFSKLTKSITGALQFIARSQELGIERIALRTSVRTKDVE 211

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-------KTKICLDRDYVDERLT 172
             ++              L  A       ++++ + +         +    + Y +E + 
Sbjct: 212 LALWTTPGAFPRGYVVKILNSAAPELTSIVRVLTKGSRRARRVCGVEKLYGKGYWEELIA 271

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHF 231
                   R    SF Q N      ++E V+           L+LYCG G F+L LA+  
Sbjct: 272 ----GRRMRISAPSFFQVNTHNAEKLIERVMDDLNVQPNETALDLYCGAGTFTLPLAQRA 327

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ VE    S++  R +I   +++NV+ +   +          RE+ +          
Sbjct: 328 RDVIGVEAQGSSIQDLRRHIKLFNLHNVQAIGGDA---------LREYPK--------AH 370

Query: 292 FKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALF 347
              I VDPPR+GL+      +       I Y+SC+P +L RD+        +   ++   
Sbjct: 371 ADVIVVDPPRAGLEAGVCDKLSQSGARAIAYVSCDPQTLARDIRRFIDKGAYLPAKITPV 430

Query: 348 DQFPYTRHMECGVLL 362
           D FP + H+E   LL
Sbjct: 431 DLFPQSWHIENVCLL 445


>gi|16764244|ref|NP_459859.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|20455404|sp|Q8ZQJ5|RUMB_SALTY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|16419391|gb|AAL19818.1| putative tRNA (uracil-5-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|312911910|dbj|BAJ35884.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321223244|gb|EFX48313.1| 23S rRNA Uracil-5- -methyltransferase rumB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 376

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGS---------LLINALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFDPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLALLRR 374


>gi|207856315|ref|YP_002242966.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|226725412|sp|B5QYK4|RUMB_SALEP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|206708118|emb|CAR32411.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 375

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLALLRR 374


>gi|33601990|ref|NP_889550.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella
           bronchiseptica RB50]
 gi|50401528|sp|Q7WI42|RUMA_BORBR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|33576428|emb|CAE33506.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 466

 Score =  199 bits (507), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 137/370 (37%), Gaps = 37/370 (10%)

Query: 12  QQLAEKVDRLRQMM---LAFQVPNL-QIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L          +   +          YR RA   +        +     ++
Sbjct: 85  AQVAIKQRALEDTFWHVGKLKPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHER 144

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     +         ++ L++ + A I        ++ QI+      D+AIV ++ H 
Sbjct: 145 KSSYVADMRECHVLPPAVSRLLLPLRAMIAAMSA-PDRMPQIEVALG--DEAIVLVLRHL 201

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---ERLTVAGRTLIYRQ 182
           L         +R   A H  ++ +Q   +   T   L+R++ D     L   G  + YR 
Sbjct: 202 LPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYTLPEFGLRMPYR- 258

Query: 183 IENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
               FTQ N  IN  M+   L       Q  + +L+CG GNF+L LA      + VE +K
Sbjct: 259 -PTDFTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSK 317

Query: 242 PSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              + A    A + +    +   ++  E      R   +            F  + +DPP
Sbjct: 318 ALTDRAHEAAARHGLGERTRFATLNLFEVDVQWLRGLGY------------FDRMLIDPP 365

Query: 301 RSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353
           R G       +    P      I+Y+SCNP +L RD +I+     + +    + + FP+T
Sbjct: 366 REGAQAVAQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHEGGYALRSAGVINMFPHT 425

Query: 354 RHMECGVLLV 363
            H+E   +  
Sbjct: 426 GHVESIAVFE 435


>gi|78046937|ref|YP_363112.1| 23S rRNA 5-methyluridine methyltransferase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78035367|emb|CAJ23012.1| RNA methyltransferase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 477

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 140/374 (37%), Gaps = 27/374 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWH--DG 55
              L   +  QQ+  K   L   +        Q        +   YR +  F +      
Sbjct: 121 GCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKK 180

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D       +   +    +         I   +  + A +      +  + QI+++    D
Sbjct: 181 DKTLVGFRELDPRFVADLSICYTVIPQIGEKIP-LFAALIEGMDGKRDIPQIEFIAG-DD 238

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              +T+ + + L +  R+  +      H     +Q  G  +   +      +  RL    
Sbjct: 239 AVALTIRHMQPLSERDRQAWVAFAQE-HGFAIFLQPGGVDSVHPLWPQDVPLSFRLPQWE 297

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+   +A  +    D +L+L+CG GNF+L LAR    V
Sbjct: 298 VELAFR--PLDFIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREV 355

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE     V  A+ N   N ++N +     + + TQ  R      +          F  
Sbjct: 356 VGVEGDAGLVARAKENAQRNGLDNAQFH---AADLTQDQRSAPWMRQ---------GFDK 403

Query: 295 IFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFP 351
           + +DPPRSG  +    + ++ +  I+Y+SC+P SL RD   L      T+      D FP
Sbjct: 404 LLLDPPRSGALEVLQQLPLKTFDRIVYVSCHPGSLARDAGYLVNDQGFTLVCAGAMDMFP 463

Query: 352 YTRHMECGVLLVRK 365
           +T H+E   +  R+
Sbjct: 464 HTAHVESIAVFERR 477


>gi|297461681|ref|XP_002701792.1| PREDICTED: HpaII tiny fragments locus 9C [Bos taurus]
          Length = 606

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 133/398 (33%), Gaps = 53/398 (13%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI---HYRMRAEF--HIWHDGDDLYHIMF 63
            YE+QL  K     Q++         I    P     YR + EF   +  DG+D      
Sbjct: 183 PYEEQLERKRQECEQVLQKLARVRTSICFHWPFLQTEYRNKCEFLVGVGVDGEDNTVGCR 242

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATI-----------RLEPLLRAKLFQIDYLTS 112
             + K           ++ I     +++                         Q+   TS
Sbjct: 243 LSKYKSGTCAVAAPFDTVHIPGATKQVVRAFQEFIRSTPYSAYDPETYSGHWKQLTVRTS 302

Query: 113 QSDQAIVTLIYHRL---------LDDAWRECAIRLRDALHARKYQIQLIGRANKTK---- 159
           +  QA+    +H           L  +  +  +              +     KT     
Sbjct: 303 RRGQAMAIAYFHPQNLSPEELAGLKTSLAQYFMEGPGKASGVTCLYFVEEGQRKTPSQEG 362

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYC 218
           + L+    D  +      L +R   ++F Q N      +   +    +   G  +L++ C
Sbjct: 363 LPLEHVAGDRCIREDVLGLTFRISPHAFFQVNTAAAEVLYTLIQDWAQLDAGSTVLDVCC 422

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LAR   RV+ VE+++ +VE AR N   N ++NV+     ++E   A+     
Sbjct: 423 GTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRAEELVPALVSRLA 482

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDSLCRDLSIL 335
             +L              +DPPR+GL    V  V+       +LY+SCNP +   +   L
Sbjct: 483 SQQL-----------VAILDPPRAGLHSKAVLAVRRAENVRRLLYVSCNPRAAMGNFVDL 531

Query: 336 ST---------THTIERLALFDQFPYTRHMECGVLLVR 364
                           +    D FP T H E  +L  R
Sbjct: 532 CRAPSNRVKGTPFRPVKAVAVDLFPQTLHCEMLILFER 569


>gi|62179445|ref|YP_215862.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161614854|ref|YP_001588819.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|224582732|ref|YP_002636530.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|75484288|sp|Q57R80|RUMB_SALCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|189045736|sp|A9N824|RUMB_SALPB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|254766928|sp|C0PXN9|RUMB_SALPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|62127078|gb|AAX64781.1| putative tRNA (uracil-5-)-methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161364218|gb|ABX67986.1| hypothetical protein SPAB_02607 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|224467259|gb|ACN45089.1| 23S rRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713914|gb|EFZ05485.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 376

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 131/386 (33%), Gaps = 47/386 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 -DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGN 220
            D+  + ER       +       SF Q N  +   +          +    + +L+CG 
Sbjct: 189 TDQQALVERF----NDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGV 244

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A        
Sbjct: 245 GGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIA-------- 296

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTT 338
                         + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   
Sbjct: 297 -------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN- 348

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + I+R+ LFD FP+T H E   LL R
Sbjct: 349 YRIQRVQLFDMFPHTAHYEVLALLRR 374


>gi|311106590|ref|YP_003979443.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310761279|gb|ADP16728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Achromobacter
           xylosoxidans A8]
          Length = 497

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 136/378 (35%), Gaps = 33/378 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
              +   +   Q+A K   L                   +     YR RA   +      
Sbjct: 75  GCAMQHLEPSTQVAIKQRSLEDTFWHVGKLRPARILAPLQGPTWGYRYRARLSVRVVPKK 134

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++ L+I +   I        ++ QI+    +  
Sbjct: 135 GGVLVGFHERKSSYVADMRECHVLPRHVSDLLIPLREMI-GSMSAPDRMPQIEVSLGEGV 193

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL--TV 173
            A+V     R L          LR        Q  L  +  +T   L+R++  E L  T+
Sbjct: 194 TALVL----RHLLPLTDGDIAILRAFAAKHNVQWWLQSKGPETVHPLEREHG-ETLAYTM 248

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               L        FTQ N  IN  M+   L   +    D + +L+CG GNF+L LA    
Sbjct: 249 PEFGLRMPYRPTDFTQVNHAINRAMVSRALKLLEVQTTDRVADLFCGLGNFTLPLATQGK 308

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
             + VE +K   + A    + + +            F      E +   L+ +      F
Sbjct: 309 EAVGVEGSKALTDRAFDAASRHGL-------GDRTSFATLNLFEVDVEWLRGLGY----F 357

Query: 293 KTIFVDPPRSGLD--DATVGMVQAYP---HILYISCNPDSLCRDLSIL--STTHTIERLA 345
             + +DPPR G       + +++A+     I+Y+SCNP +L RD +I+     + ++   
Sbjct: 358 DRMLIDPPREGAHAVAQALSLLEAHERPVRIVYVSCNPATLARDAAIMVHEGGYVLKSAG 417

Query: 346 LFDQFPYTRHMECGVLLV 363
           + + FP+T H+E   +  
Sbjct: 418 VINMFPHTGHVESIAVFE 435


>gi|153212411|ref|ZP_01948193.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae 1587]
 gi|124116619|gb|EAY35439.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae 1587]
          Length = 375

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 148/382 (38%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y +Q+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVNCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLNFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LLVRK
Sbjct: 354 VQWFDMFPHTDHAEVLTLLVRK 375


>gi|57234195|ref|YP_181780.1| RNA methyltransferase [Dehalococcoides ethenogenes 195]
 gi|57224643|gb|AAW39700.1| RNA methyltransferase, TrmA family [Dehalococcoides ethenogenes
           195]
          Length = 395

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/371 (18%), Positives = 137/371 (36%), Gaps = 69/371 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSE-PIHYRMRAEFHIWHDGDD 57
             T     Y  QL  K   +        + +    ++  S     YR  A F I+H    
Sbjct: 82  GCTFQHISYPHQLKLKHQIILAEFEKAGLDSTYISEVIPSAAEYGYRNHARFSIYH---- 137

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                 ++ ++  +++D+    +  IN ++ E+         L                 
Sbjct: 138 AKLGFVNRFSRRHVQVDHCRIMNSGINKVLAELQDKCGETRQLS---------------- 181

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
               I H    D++       +  +          G+     + L  D            
Sbjct: 182 ----IRHASNKDSYLIQPKLTKADISIES------GQKEYHDLLLGHD------------ 219

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
             +     SF Q N      M   +        G+ L++ Y G G F+++L+   +RV+A
Sbjct: 220 --FCISAASFFQVNNPQAEKMAGLIKKHLNLSGGETLVDAYAGVGTFAVLLSPDCNRVIA 277

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E +  +++ AR NIA   ++N+++++  +++     +                +   + 
Sbjct: 278 IEESAAAIKDARLNIA--GIDNIELIQSKTEDVISQFQG---------------QMDALI 320

Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYT 353
           +DP RSG   + +  +   P  +++Y++C+P SL RDL  +L     + ++   D FP T
Sbjct: 321 LDPSRSGAHPSVLASICQNPPRNLVYVACDPSSLARDLKILLGGPFELSQVIPVDMFPQT 380

Query: 354 RHMECGVLLVR 364
            H+E   L+ R
Sbjct: 381 YHVETVCLMSR 391


>gi|15601683|ref|NP_233314.1| 23S rRNA methyluridine methyltransferase [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|153821031|ref|ZP_01973698.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae B33]
 gi|229510217|ref|ZP_04399697.1| RNA methyltransferase TrmA family [Vibrio cholerae B33]
 gi|229517653|ref|ZP_04407098.1| RNA methyltransferase TrmA family [Vibrio cholerae RC9]
 gi|229605461|ref|YP_002876165.1| 23S rRNA methyluridine methyltransferase [Vibrio cholerae MJ-1236]
 gi|254850093|ref|ZP_05239443.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio cholerae MO10]
 gi|20455420|sp|Q9KL20|RUMB_VIBCH RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|9658366|gb|AAF96826.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126521405|gb|EAZ78628.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae B33]
 gi|229345689|gb|EEO10662.1| RNA methyltransferase TrmA family [Vibrio cholerae RC9]
 gi|229352662|gb|EEO17602.1| RNA methyltransferase TrmA family [Vibrio cholerae B33]
 gi|229371947|gb|ACQ62369.1| RNA methyltransferase TrmA family [Vibrio cholerae MJ-1236]
 gi|254845798|gb|EET24212.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Vibrio cholerae MO10]
          Length = 375

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 148/382 (38%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y +Q+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPTLIAAFPMIEVISVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  +ILY SCNP ++ +D++ LS+ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAELSS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LLVRK
Sbjct: 354 VQWFDMFPHTDHAEVLTLLVRK 375


>gi|315925903|ref|ZP_07922108.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620724|gb|EFV00700.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 464

 Score =  199 bits (506), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 145/401 (36%), Gaps = 54/401 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHD-GD 56
             T     Y  QLA K   +  ++    +   +   + P      YR + EF    D   
Sbjct: 83  GCTYQSTAYPPQLAMKDGWVMTLLAEAGITGFEHLPALPSPEIYGYRNKMEFSFGDDCPG 142

Query: 57  DLYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAK 103
               +   ++      +             A++  ++   R               LR  
Sbjct: 143 GPLMLGLHEKGHFYNIVSAQDCALAHPDFGAIVTAVLDYFRSRGAQAFHKRAHTGFLRYL 202

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------RLRDALHARKYQIQLIGRANK 157
           + +    T +    +VT     L D A+ +         +L   +H+    +  + RA+ 
Sbjct: 203 VVRRGAATGEIMVNLVTTSQGTLDDAAFVQALEHLPLAGKLATVIHSVYDGVADVARADT 262

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK--------GI 209
           +++ L    + + +      + +     SF Q N      +   V  A          G 
Sbjct: 263 SRMLLGEGIIHDTIL----GIDFAVSPFSFLQTNTRGAETLYTAVRRAVTAGTERRGSGK 318

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  + +LYCG G  + VLA   + V  +E+   +V AAR N AAN + N   +    K  
Sbjct: 319 KPAVFDLYCGVGTIAQVLAPIAEHVTGIELVPEAVNAARANAAANGLTNCTFIAGDVK-- 376

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDS 327
                         ++   +   + I +DPPR G+    +  + A+     +Y+SC   S
Sbjct: 377 -------------AEVGKLAEAPEVIVLDPPREGIHPRALPDILAFAPACFVYVSCKASS 423

Query: 328 LCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           L RDL + ++  + +E +   D FP T H+EC  L+ R  S
Sbjct: 424 LARDLPAFVAAGYRVETVQCVDMFPQTVHVECIALIQRVKS 464


>gi|167992134|ref|ZP_02573232.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205329669|gb|EDZ16433.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246138|emb|CBG23941.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992643|gb|ACY87528.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157465|emb|CBW16955.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|323129187|gb|ADX16617.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987814|gb|AEF06797.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 376

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGS---------LLINALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLYRDG---TPVDLCGCPLYPASFDPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLALLRR 374


>gi|121726370|ref|ZP_01679644.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V52]
 gi|121631118|gb|EAX63493.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae V52]
          Length = 375

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 143/383 (37%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y QQ+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHLCAQPYSQQVENKDQQLRELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            + D Q +    +    +      + A +   +    + P         L+  L      
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTQSEN 132

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECA--IRLRDALHARKYQIQLIGRAN---KTKICLDRD 165
           + Q     V    H +L+   R           +      IQ +  A    + +I L   
Sbjct: 133 SGQFMLRFVAR-SHAVLERIERNLPMLTAAFPMIEVISVNIQPVHMARLEGEEEIFLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
              + L      +       SF Q N  +   +     A  + I    + +L+CG G F+
Sbjct: 191 --TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFA 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E      
Sbjct: 249 LHCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL----- 303

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + 
Sbjct: 304 ----------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMAKDIAELAS-YQMI 352

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R   FD FP+T H E   LLVRK
Sbjct: 353 RAQWFDMFPHTNHAEVLTLLVRK 375


>gi|307245126|ref|ZP_07527219.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254082|ref|ZP_07535929.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258537|ref|ZP_07540274.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306854015|gb|EFM86227.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863007|gb|EFM94954.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867441|gb|EFM99292.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 442

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 139/370 (37%), Gaps = 29/370 (7%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDD 57
            G  +     + Q   K   L Q +   Q   +    +       YR RA+  I    + 
Sbjct: 95  GGCQMQHIPLDLQREAKQQALFQRLQKLQSQPIDFQPMIIGNDKGYRRRAKLSIALQNNQ 154

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           L      Q + + + ++        ++ L I+ + ++      +  L  I+ +  Q+D  
Sbjct: 155 LAIGFRMQNSNQIIPLEQCGVLVEPLSQL-IKPLQSLFNTWQNKKTLGHIELV--QADDT 211

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  LI  R +     + +  L+         + ++   N            E        
Sbjct: 212 ITMLI--RNVGQFHPQDSRNLQQFAERHSLSLYVMTAENDITHLSG-----EAPYYQIHG 264

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           +        F Q N  +N  M++  L       Q  +L+L+CG GNF+L +A+    V+ 
Sbjct: 265 VKLGFSIRDFIQVNGDLNEKMVDKALEWLDLSAQDRVLDLFCGMGNFTLPIAKQAGFVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  +P V  A+ N   + + NV   + +  E               D    S  F  + 
Sbjct: 325 VEGVEPMVAQAKQNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVL 372

Query: 297 VDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354
           +DP R+G       +    P  I+Y+SCNP +L RD   L    + +++ A+ D FP+T 
Sbjct: 373 LDPARNGAFFCLDHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTG 432

Query: 355 HMECGVLLVR 364
           H+E   L  +
Sbjct: 433 HLESLSLFTK 442


>gi|293605691|ref|ZP_06688069.1| 23S rRNA (uracil-5-)-methyltransferase [Achromobacter piechaudii
           ATCC 43553]
 gi|292815929|gb|EFF75032.1| 23S rRNA (uracil-5-)-methyltransferase [Achromobacter piechaudii
           ATCC 43553]
          Length = 517

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 134/369 (36%), Gaps = 37/369 (10%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIF----RSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQ 66
           Q+A K   L             +     +     YR RA   +        +     +++
Sbjct: 86  QVAIKQRSLEDTFWHVGKLRPALILPPLQGPTWGYRYRARLSVRVVPKKGGVLVGFHERK 145

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           +     +         ++ L++ + A I        ++ QI+    +   A+V     R 
Sbjct: 146 SSYVADMRECHVLPRHVSDLLLPLRAMI-GSMSAPDRMPQIEVSLGEGVTALVL----RH 200

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---ERLTVAGRTLIYRQI 183
           L     +    LR        Q  L  +  +T   L+R++ D     +   G  + YR  
Sbjct: 201 LLPLTDDDIAILRAFAAKHNVQWWLQAKGPETVHPLEREHADTLSYTMPEFGLRMPYR-- 258

Query: 184 ENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              FTQ N  IN  M+   L          + +L+CG GNF+L LA      + VE +K 
Sbjct: 259 PTDFTQVNHAINRSMVSRALKLLDVQPTDRVADLFCGLGNFTLPLATQGREAVGVEGSKA 318

Query: 243 SVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             + A    A + +        ++  E      R   +            F  + +DPPR
Sbjct: 319 LTDRAFDAAARHGLAERTSFATLNLFEVDAHWLRSLGY------------FDRMLIDPPR 366

Query: 302 SGLDDATVGM----VQAYP-HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTR 354
            G    +  +    VQ  P  I+Y+SCNP +L RD SIL     + ++   + + FP+T 
Sbjct: 367 EGAHAVSQALSELSVQERPRRIVYVSCNPATLARDASILVHEGGYELKSAGVINMFPHTG 426

Query: 355 HMECGVLLV 363
           H+E   +  
Sbjct: 427 HVESIAVFE 435


>gi|261212969|ref|ZP_05927253.1| RNA methyltransferase TrmA family [Vibrio sp. RC341]
 gi|260838034|gb|EEX64711.1| RNA methyltransferase TrmA family [Vibrio sp. RC341]
          Length = 377

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 148/382 (38%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S       Y QQ+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHQCAQPYSQQVENKDQQLRELIAPAMDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQYMLRFVARSHAVLERIERNLPTLIAAFPTIEVVSVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPDTVVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LLVRK
Sbjct: 354 VQWFDMFPHTDHAEVLTLLVRK 375


>gi|323142713|ref|ZP_08077430.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei
           YIT 12066]
 gi|322417508|gb|EFY08125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei
           YIT 12066]
          Length = 444

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 151/381 (39%), Gaps = 32/381 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIFRSE--PIHYRMRAEFHIWHDGDDL 58
              L     + Q   K ++++  +++     + + F  E  P   R +   +  +    +
Sbjct: 79  GCQLQHWSLKAQHQYKKEQIKAALISCNITADPEDFADENRPQICRYKTIRYFKNADGKI 138

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR------LEPLLRAKLFQIDYLTS 112
               + +++ + + +D         +A + ++ A          + +    L +   L  
Sbjct: 139 KAGFYKKRSHDLIEVDKCALEPEWFSAFLQDITALFNSFSLKAYDEITHNGLIRNVMLRD 198

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDE 169
              Q +  +    LL +  ++  I+L    H       L+  A   +I  DR    +  E
Sbjct: 199 GKPQRLALICTTDLLSEDLQKSLIKLAQK-HQINSLNYLVNDAKGNRILGDRSIVLFGKE 257

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +       ++    ++F Q N    + + +  +A     +  L L+L CG G  SL+LA
Sbjct: 258 YMQAELCGHLFNVRPHAFLQVNPYATLELYKKAVAWCGENKDALALDLCCGVGTMSLLLA 317

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
            HF +V+ VEI + +V AA+ N   N  +NV  +    K+   ++  E            
Sbjct: 318 AHFKKVIGVEIVEEAVAAAKENAQLNKYDNVSFIASDLKKVLSSLINE------------ 365

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCRDLS-ILSTTHTIERL 344
               K +  DP R+GL +A    +  +     +  I C+  +L RDL  +L     I ++
Sbjct: 366 --NVKAVIADPARAGLGEANCRALNRFKGEVKLALIFCSLTALKRDLPILLKGGWKIHQI 423

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
              D FP++ H+E  VLL +K
Sbjct: 424 QGVDMFPHSTHVETLVLLAKK 444


>gi|22126722|ref|NP_670145.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis KIM 10]
 gi|45441084|ref|NP_992623.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806623|ref|YP_650539.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Antiqua]
 gi|108812805|ref|YP_648572.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Nepal516]
 gi|145599632|ref|YP_001163708.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Pestoides
           F]
 gi|149366685|ref|ZP_01888719.1| putative RNA methyltransferase [Yersinia pestis CA88-4125]
 gi|162419159|ref|YP_001606076.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis Angola]
 gi|165924539|ref|ZP_02220371.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936154|ref|ZP_02224723.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009879|ref|ZP_02230777.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211303|ref|ZP_02237338.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399932|ref|ZP_02305450.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167419571|ref|ZP_02311324.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423862|ref|ZP_02315615.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469043|ref|ZP_02333747.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis FV-1]
 gi|218928486|ref|YP_002346361.1| 23S rRNA methyluridine methyltransferase [Yersinia pestis CO92]
 gi|229841295|ref|ZP_04461454.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229843398|ref|ZP_04463544.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229895772|ref|ZP_04510942.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Pestoides A]
 gi|229903224|ref|ZP_04518337.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Nepal516]
 gi|270487015|ref|ZP_06204089.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis KIM
           D27]
 gi|294503331|ref|YP_003567393.1| 23S rRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003]
 gi|20455400|sp|Q8ZGG1|RUMB_YERPE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|122979761|sp|Q1CAC8|RUMB_YERPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|123073272|sp|Q1CGA8|RUMB_YERPN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|167012650|sp|A4TN73|RUMB_YERPP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725417|sp|A9R4V6|RUMB_YERPG RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|21959742|gb|AAM86396.1|AE013887_3 putative enzyme [Yersinia pestis KIM 10]
 gi|45435943|gb|AAS61500.1| putative RNA methyltransferase [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108776453|gb|ABG18972.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis
           Nepal516]
 gi|108778536|gb|ABG12594.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis
           Antiqua]
 gi|115347097|emb|CAL19989.1| putative RNA methyltransferase [Yersinia pestis CO92]
 gi|145211328|gb|ABP40735.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis
           Pestoides F]
 gi|149291059|gb|EDM41134.1| putative RNA methyltransferase [Yersinia pestis CA88-4125]
 gi|162351974|gb|ABX85922.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis
           Angola]
 gi|165915768|gb|EDR34376.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923599|gb|EDR40731.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991275|gb|EDR43576.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207074|gb|EDR51554.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962312|gb|EDR58333.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050640|gb|EDR62048.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056711|gb|EDR66474.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229678994|gb|EEO75097.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Nepal516]
 gi|229689745|gb|EEO81806.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697661|gb|EEO87708.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700695|gb|EEO88724.1| 23S rRNA m(5)U747 methyltransferase [Yersinia pestis Pestoides A]
 gi|262365091|gb|ACY61648.1| 23S rRNA (uracil-5-)-methyltransferase [Yersinia pestis D182038]
 gi|270335519|gb|EFA46296.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia pestis KIM
           D27]
 gi|294353790|gb|ADE64131.1| 23S rRNA (uracil-5-)-methyltransferase [Yersinia pestis Z176003]
 gi|320015811|gb|ADV99382.1| tRNA uracil-5--methyltransferase [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 376

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 136/384 (35%), Gaps = 41/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLY 59
           S   L   Y QQLA+K   L  ++    V      +F      +R +A+  +    +   
Sbjct: 13  SCQWLDKPYPQQLADKQHHLESLLAGHAVTQWLAPVF-GRESAFRNKAKMVVSGSVERPL 71

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDY 109
             M  +     +      + P    +  ++   +A   L P         L+  L     
Sbjct: 72  LGMLHRDGTPVDLCACPLYPPSFEPVFTVLKTFIARAGLTPYNVARKRGELKFLLLTEST 131

Query: 110 LTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDR 164
              +     V     +L  L  A      +L   L      IQ +  A    + +I L  
Sbjct: 132 YNGELMLRFVLRSETKLAQLIAALPWLQQQLPQ-LAVISANIQPVHMAILEGEREIPLTE 190

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
               + L      +       SF Q N  +   +        +  +   + +L+CG G F
Sbjct: 191 ---QQALPERFNQVPLYIRPQSFFQTNPQVAASLYATARQWVQEHEVHSMWDLFCGVGGF 247

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A    ++  +EI   ++  AR +     + NV    + S  F  A           
Sbjct: 248 GLHCAGPETQLTGIEINAEAIACARQSAEQLGLKNVSFAALDSTRFATA----------- 296

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                +   + + V+PPR G+       +   A   ILY SCN +++ +D+S+L   + I
Sbjct: 297 ----EAQIPELVLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMAKDISLL-AGYHI 351

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           ER+ LFD FP+T H E   LL  +
Sbjct: 352 ERVQLFDMFPHTSHYEVLTLLTLR 375


>gi|121586704|ref|ZP_01676488.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae
           2740-80]
 gi|147671793|ref|YP_001215150.1| 23S rRNA methyluridine methyltransferase [Vibrio cholerae O395]
 gi|153818315|ref|ZP_01970982.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae NCTC
           8457]
 gi|227812495|ref|YP_002812505.1| putative TrmA family RNA methyltransferase [Vibrio cholerae M66-2]
 gi|229505928|ref|ZP_04395437.1| RNA methyltransferase TrmA family [Vibrio cholerae BX 330286]
 gi|262169193|ref|ZP_06036886.1| RNA methyltransferase TrmA family [Vibrio cholerae RC27]
 gi|298499706|ref|ZP_07009512.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MAK
           757]
 gi|172047366|sp|A5F0U5|RUMB_VIBC3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|254766930|sp|C3LWJ3|RUMB_VIBCM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|121549132|gb|EAX59167.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae
           2740-80]
 gi|126511128|gb|EAZ73722.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae NCTC
           8457]
 gi|146314176|gb|ABQ18716.1| putative TrmA family RNA methyltransferase [Vibrio cholerae O395]
 gi|227011637|gb|ACP07848.1| putative TrmA family RNA methyltransferase [Vibrio cholerae M66-2]
 gi|227015576|gb|ACP11785.1| putative TrmA family RNA methyltransferase [Vibrio cholerae O395]
 gi|229356279|gb|EEO21197.1| RNA methyltransferase TrmA family [Vibrio cholerae BX 330286]
 gi|262022474|gb|EEY41182.1| RNA methyltransferase TrmA family [Vibrio cholerae RC27]
 gi|297541687|gb|EFH77738.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MAK
           757]
          Length = 375

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 148/382 (38%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S       Y QQ+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHQCAQPYSQQVENKDQQLRELIAPAMDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPTLIAAFPTIEVVSVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEQFNDVPMVIRPKSFFQTNPQVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPQHILYSSCNPQTMVKDIAELAS-YQMSR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LLVRK
Sbjct: 354 VQWFDMFPHTDHAEVLTLLVRK 375


>gi|94502134|ref|ZP_01308635.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
 gi|94425736|gb|EAT10743.1| 23S rRNA (uracil-5-)-methyltransferase [Oceanobacter sp. RED65]
          Length = 448

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 145/370 (39%), Gaps = 30/370 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA----FQVPNLQIFRSEPIHYRMRAEFHIW--HDG 55
              L     + Q+  K + L+    +       P       +   YR RA   I   H  
Sbjct: 98  GCQLQHLSSQHQIPYKQNNLQHEFASKLKIDSAPWQTPITGDAYGYRRRARIGIRYRHKT 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            ++     +QQ      I         +  L+  + +   L+ + + ++     L +  D
Sbjct: 158 GEVIVGFREQQNSHLTDISECPVLVSELQNLIPSLKS--VLKKVQKVEVVTQAQLLAGDD 215

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            ++V+L   + L  + ++  I       A+   +QL  + +     L +   D+ L    
Sbjct: 216 LSVVSLRAIKSLPQSDKQILIEW-----AKSEAVQLDIQGDDAIETLFQPN-DKTLWFNV 269

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             +      NSF Q N  +N  M++  L          +L+L+ G GNF+L LA+H  RV
Sbjct: 270 AGMRIHFASNSFIQANGRVNEQMVQTALQWLNVKAHETVLDLFAGLGNFTLPLAQHAKRV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            AVE+ K  V   ++N   N ++NV +   +                  D          
Sbjct: 330 CAVELDKKMVADLQHNAQRNELSNVDVQLGNLDNL--------------DAVERLSAADV 375

Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           I +DPPR+G       + +    +LY++C P SL RD ++L  +   ++++ + D FP T
Sbjct: 376 IVLDPPRAGAAVIMPWVAKQKSRVLYVACEPSSLIRDAAVLVESGFKLDKVVVLDMFPQT 435

Query: 354 RHMECGVLLV 363
           +H+E   L  
Sbjct: 436 KHVETMALFS 445


>gi|167625624|ref|YP_001675918.1| 23S rRNA methyluridine methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|167355646|gb|ABZ78259.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella
           halifaxensis HAW-EB4]
          Length = 358

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 74/372 (19%), Positives = 142/372 (38%), Gaps = 39/372 (10%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           Q+A K   L Q++  F+V    +        +R +A+  +       +  +    T    
Sbjct: 4   QVAAKSQVLSQLLSGFEVEQWREPVFGPESGFRNKAKMVVL---GAAHQPILGIVTPTGE 60

Query: 72  RIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQSDQAIV- 119
            +         I+  M +++  + L              ++ +L  I    SQ     + 
Sbjct: 61  PVSLCDCNLYPID--MQQLLHRLELFVRQAGIPPYNVDKVKGELKFILLTRSQIKGEYLL 118

Query: 120 --TLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              L  H+ ++   RE    L +   +      IQ +  A            + RL+   
Sbjct: 119 RFVLRSHKSIERIERELPQLLSEYPQIKVVSVNIQPVHMAILEGEEELFLTEETRLSEQF 178

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             +       SF Q +  I   + +        ++ D L +L+CG G F L  A     +
Sbjct: 179 NDVPLFIRPKSFFQTHPEIAAKLYQTAREWVAELKPDTLWDLFCGVGGFGLHCASKQSAL 238

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             +EI+  ++  A+ +  A  +  V    + S  F Q    +              +   
Sbjct: 239 TGIEISAEAITCAKLSAEAMGLTQVNFTALDSTGFAQGCDAKD-------------KPDV 285

Query: 295 IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+ ++    + A+    ILY SCNP +L +DL+ +   + ++++ LFD FP+
Sbjct: 286 VIVNPPRRGIGESLCQSLSAFAPKAILYSSCNPHTLAKDLACI-QGYRVQKVQLFDMFPH 344

Query: 353 TRHMECGVLLVR 364
           T H E  V+L++
Sbjct: 345 TDHFEVLVMLLK 356


>gi|301109485|ref|XP_002903823.1| tRNA (uracil-5-)-methyltransferase [Phytophthora infestans T30-4]
 gi|262096826|gb|EEY54878.1| tRNA (uracil-5-)-methyltransferase [Phytophthora infestans T30-4]
          Length = 815

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 132/373 (35%), Gaps = 44/373 (11%)

Query: 31  PNLQIFRSE-PIHYRMRAEFHIWHDGDD-----LYHIMFDQQTKERMRIDYFMPGSLLIN 84
           P   I  S     YR + EF    D +D         +F + +    + D  +  S  + 
Sbjct: 445 PMDSIHASPVTEGYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSKPDECINVSKEMK 504

Query: 85  ALMIEMMATIRLEPLL-----------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           A+   M   +    +            R    +    T +    +   +  +  ++    
Sbjct: 505 AVCAVMQNIVETSDVPVYSVTTKSGVWRVLTVRQSVSTGELMVMVQVNLVGKTPEERAAV 564

Query: 134 CA---IRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-----RLTVAGRTLIYRQIEN 185
                 RL D  +A K     I          D D V+      +L      + +    N
Sbjct: 565 KDLVVKRLTDESNAFKITSVFIQEYEGLSAPSDNDPVEHVYGKTKLEEHLLGMRFSVSPN 624

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F Q N      +   V       +  LL ++ CG G   +  +    +V+ +EI KP+ 
Sbjct: 625 AFFQVNTHGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICASEGVGKVVGIEICKPAT 684

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N   N+V NV  V   +++  +++ +++     +D            VDPPR+GL
Sbjct: 685 DDAQVNAILNNVQNVSFVNSKAEDVMKSLLQKK-----RDESEKHLNRVVAIVDPPRAGL 739

Query: 305 DDATVGMVQAYP---HILYISCNPD-SLCRDLSILSTT---------HTIERLALFDQFP 351
               +  ++A P    I+Y+SCNP  SL RD   L                     D FP
Sbjct: 740 HHNVLRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSLQGQAFEPVHAVPVDMFP 799

Query: 352 YTRHMECGVLLVR 364
           +T H E  ++  R
Sbjct: 800 HTPHCEMIIVFDR 812


>gi|168263599|ref|ZP_02685572.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205347794|gb|EDZ34425.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 375

 Score =  199 bits (505), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 131/386 (33%), Gaps = 47/386 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 -DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGN 220
            D+  + ER       +       SF Q N  +   +          +    + +L+CG 
Sbjct: 189 TDQQALVERF----NDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGV 244

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A        
Sbjct: 245 GGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA-------- 296

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTT 338
                         + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   
Sbjct: 297 -------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN- 348

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + I+R+ LFD FP+T H E   LL R
Sbjct: 349 YRIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|71017959|ref|XP_759210.1| hypothetical protein UM03063.1 [Ustilago maydis 521]
 gi|46098831|gb|EAK84064.1| hypothetical protein UM03063.1 [Ustilago maydis 521]
          Length = 574

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 142/421 (33%), Gaps = 90/421 (21%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL--------QIFRSEPIHYRMRA----- 47
            G    +  Y  QL  K   + +    F   +          I      +YR +      
Sbjct: 189 GGCQYQMIDYAHQLEIKRGVVEKAFARFSGLDPSLIPRVLPTIASPNQYNYRTKLTPHFE 248

Query: 48  ---EFHIWHDGDDLYHIMFDQ---------------------QTKERMRIDYFMPGSLLI 83
              E           +   D                       TK+ M I+     +  I
Sbjct: 249 LPYELRRGRRSGVRNNASADGNGVEADHEKPKYSVPIGFDCIGTKKVMDIEECPIATKTI 308

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
           N  + +    +             + + S  + A +      LL D+ R       D L 
Sbjct: 309 NKALPDAKQKV------------CNTIESFKNGATI------LLRDSLRTYGSFAEDLLV 350

Query: 144 ARKYQIQLIGRAN-KTKICLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
             +            T++  D +  V ER+     T  +     +F Q N  I   +L++
Sbjct: 351 TEERATDGQVHKELDTEVVTDHKATVKERVL----TTKFESPAGTFFQNNRSILPSLLDY 406

Query: 202 VLAATKGIQGD----------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           V  A                 L++ YCG+G FSL LA  F  V  VEI+  S++ A  N 
Sbjct: 407 VREAITSASSTTGEDSAQARYLVDAYCGSGLFSLCLASLFREVSGVEISSESIKYATKNA 466

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N + N K +  ++++    +    +               T+ +DPPR G D   +  
Sbjct: 467 ELNGITNTKFLAGNAEDIFGKIEYPAD-------------KTTVIIDPPRRGCDQEFIRQ 513

Query: 312 V--QAYPHILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +   A  HI+Y+SCN  +  RD+  L      + I+ +   D FP T H+E   +L R+ 
Sbjct: 514 LVNLAPKHIVYVSCNVHTQARDVGQLISKDPRYKIKSVRGADLFPQTHHVEGVAVLERRD 573

Query: 367 S 367
           +
Sbjct: 574 A 574


>gi|91788917|ref|YP_549869.1| 23S rRNA 5-methyluridine methyltransferase [Polaromonas sp. JS666]
 gi|123059681|sp|Q128S1|RUMA_POLSJ RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|91698142|gb|ABE44971.1| 23S rRNA m(5)U-1939 methyltransferase [Polaromonas sp. JS666]
          Length = 486

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 74/401 (18%), Positives = 134/401 (33%), Gaps = 49/401 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIW--HDG 55
              +       Q+A K   L   +           L+        YR RA   +      
Sbjct: 96  GCKMQHLHVGAQVAVKQRVLEDNLWHIGKVKADNLLRPIEGPAWGYRYRARLSVRYVRKK 155

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           + +     ++++     +         ++ +++ +   I      R  L QI+     + 
Sbjct: 156 NAVLVGFHERKSSYVADMTECHVVPRHVSDMLVPLRELIAGMDA-RETLPQIELACGDTV 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER---LT 172
            A+V     R ++        RLR    +       +       + L  + V E    L 
Sbjct: 215 TAMVL----RHMEPLSSGDLARLRAFAVSHPGLQWWLQPGGLDSVKLLDEGVPELSYDLP 270

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
             G T+ ++     FTQ N  IN  ++   L        + +++ +CG GNF+L LA   
Sbjct: 271 EFGITMPFK--PTDFTQVNPHINQVLVSRALRLLAVQPHERVIDWFCGLGNFTLPLATCA 328

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             VL +E ++  V  +  N   N   +     +S+ EF         F     + +    
Sbjct: 329 REVLGIEGSEALVARSCQNFKKNQPASQSRSALSATEFV----ARNLFEMTPAMLVKDGM 384

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--------------------------PHILYISCNP 325
                VDPPR G  +    +   +                            I+Y+SCNP
Sbjct: 385 ADKWLVDPPREGAFELFKSLAALHQQMVTGVPCDDGEQQQSLVLGDWTPPQRIVYVSCNP 444

Query: 326 DSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVR 364
            +L RD  +L  S  +      + + FP+T H+E   +  R
Sbjct: 445 ATLARDAGVLVESGAYRCTLAGVVNMFPHTAHVESIAVFER 485


>gi|326436196|gb|EGD81766.1| hypothetical protein PTSG_02479 [Salpingoeca sp. ATCC 50818]
          Length = 735

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 141/430 (32%), Gaps = 82/430 (19%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLA---------FQVPNLQI----FRSEP--------- 40
             L    YE+QL  K   +   M            Q   ++I    F   P         
Sbjct: 252 CPLWRKPYEEQLDIKRRLVVTTMRKMARQLKKANIQDAWVEIATRKFAGMPCVLLDTVPS 311

Query: 41  ---IHYRMRAEFHIWHDGDDL------YHIMFDQQTKERMR---IDYFMPGSLLINALMI 88
                YR + EF I    D            +   +   +           +  I   + 
Sbjct: 312 PIVDGYRTKCEFTIGSGPDGQANTVGFRVGSYAAGSITVVEPSLCRNVPDRAKTIAKHVQ 371

Query: 89  EMMATIRLEPLL----RAKLFQIDYLTSQSDQAIVTLI--YHRLLDDAWRECAIRLRDAL 142
           + +             +    Q+    + S QA+  L      L D A  + A RL++ +
Sbjct: 372 DFVRASSHPHYCLVTHKGCWRQLLVRVTNSGQALAVLFLTDAELEDGAVAKEAERLKEFV 431

Query: 143 HARKYQIQLI-----------GRANKTKICLDRD--YVDERLTVAGRTLIYRQIENSFTQ 189
           H     I ++            +       +  D  +++E+L      L +R   +SF Q
Sbjct: 432 HEHNTPIDIMMLQVDNSASCMAKDRPAPHIIKGDSQFIEEKLL----GLNFRISPDSFFQ 487

Query: 190 PNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N      +   +    +        +L+L CG G     LA     V+ VE+ + +V  
Sbjct: 488 VNTPGAEVLYSLIGDWCQLTDDKSDVVLDLCCGTGTIGQTLASRVQHVIGVEMVEDAVID 547

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N   N + NV      ++E    + ++R+          +       VDPPR+GL  
Sbjct: 548 AKANAQRNGITNVTYHTGKAEEVVPELVKDRD----------TADKLIAVVDPPRAGLHP 597

Query: 307 ATVGMVQAYP---HILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTR 354
           + V  ++       ++Y+SCN     ++L  L              I +    D FP+T 
Sbjct: 598 SVVHAIRRCEGIQRLIYVSCNLKGASQNLVDLCRPPSKRYRGAPFEIIKAVPVDMFPHTD 657

Query: 355 HMECGVLLVR 364
           H E  + L R
Sbjct: 658 HCEVVLYLSR 667


>gi|320535233|ref|ZP_08035358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Treponema phagedenis
           F0421]
 gi|320147924|gb|EFW39415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Treponema phagedenis
           F0421]
          Length = 537

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 159/389 (40%), Gaps = 37/389 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIW-HDGDD 57
             +LL  +Y+ QL  K   +           +Q   I+ + P +YR + +  I       
Sbjct: 79  GCSLLHQEYQSQLKVKKQFVENNFKKIARTEVQVENIYSANPFYYRNKVQLPIGLSSDGK 138

Query: 58  LYHIMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAK---LFQIDYLT 111
           +    +   T E +  D      P    I A+ ++   T +L    ++    L +   + 
Sbjct: 139 IIAGYYKINTHEVVAQDDCYLANPQFKKIIAVFLKFANTEKLSVYNKSNSKGLLRHLIIR 198

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--TKICLDRDYVDE 169
              D   +T++    ++ +      +L    +A    I +   +N   + + L+   +++
Sbjct: 199 KIGDTPFLTIV----INGSEVPNLHKLNAMYNAENIFISIGISSNTKHSSLILNNKVINK 254

Query: 170 -----RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
                 L     T I R  +NSF Q N+ +   + +  +   + I+ D ++E Y G G  
Sbjct: 255 FGKAIELADILGTKI-RASQNSFMQVNSEVRDLLYKDAINIIEEIKTDTIIEGYSGIGIM 313

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           + V A+ F +V A+EI   +VE A YN   N+ NN+K +   + +             + 
Sbjct: 314 TNVFAKQFKKVYAIEIDPEAVEDAEYNRKLNNNNNIKNICGDAAK------------EIS 361

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTI 341
            I         +  DPPR GLD   +  ++      I YISC+  +L RD S L   +TI
Sbjct: 362 KIINAVKENYALVFDPPRKGLDKKIIDAIKKSKPKTIFYISCDSATLARDYSYLKDLYTI 421

Query: 342 ERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           E+L  +D FP T H+E   LL +     H
Sbjct: 422 EKLLCYDMFPQTSHVETVALLSKLDVDKH 450


>gi|162447375|ref|YP_001620507.1| TrmA family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161985482|gb|ABX81131.1| RNA methyltransferase, TrmA family [Acholeplasma laidlawii PG-8A]
          Length = 460

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 144/379 (37%), Gaps = 39/379 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           YE+ L  K D L   +  +    +        I  +EP+ YR +    +          +
Sbjct: 92  YEKSLQIKRDILINALNRYVDKKIVYSKIKQTIGMNEPLGYRNKVSLPVRKLEGKNKFGL 151

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF---------QIDYLTSQ 113
           + +   E + ++        IN + I+++ T+  +    A +           +   +  
Sbjct: 152 YAKGGNEFIPVNDTPVHQPRINEI-IQIVETLMDQHKFHAYIQKDKSGYMKSMVIRRSYT 210

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDE 169
           + +  V+ +  +   +   +    L                  K +I    +Y       
Sbjct: 211 TGEVQVSFLLMKK-FEGIAKFTEALVAQCPDIVSVFAFYTDKYKEQIFFTNNYENLFGKA 269

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLA 228
            +        +     +F Q N  +       +         D+ ++ Y G+   S  +A
Sbjct: 270 TINEKINHQTFSLYPEAFFQLNTVMADKFYNKMRELANLQPTDVVIDAYAGSAPISHYIA 329

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +   +V A+EI + SV++A  ++  N++ NV +++    +F +A++           ++ 
Sbjct: 330 KDVKKVYAIEIDQRSVQSAILSLKRNNIKNVTVIQ---SDFKKALK-----------NLE 375

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLAL 346
                 +F DPPR+GL   T+  +  Y    ++Y SCNP +L +DL  L  T+ ++ L  
Sbjct: 376 VDTIDAMFFDPPRTGLGYDTIKQILKYKPKKLIYGSCNPSTLAKDLEDLLKTYELKSLIP 435

Query: 347 FDQFPYTRHMECGVLLVRK 365
            D FPYT  +E   LL  +
Sbjct: 436 MDMFPYTPLVESVSLLELR 454


>gi|269139581|ref|YP_003296282.1| 23S rRNA metyluridine methyltransferase [Edwardsiella tarda EIB202]
 gi|267985242|gb|ACY85071.1| 23S rRNA metyluridine methyltransferase [Edwardsiella tarda EIB202]
 gi|304559469|gb|ADM42133.1| 23S rRNA (Uracil-5-) -methyltransferase RumB [Edwardsiella tarda
           FL6-60]
          Length = 377

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 137/382 (35%), Gaps = 39/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y +QL +K   L  ++    V   L    S     R +A+  +    +    
Sbjct: 13  SCQWLSIPYSRQLEDKQRHLAALLSGHPVAQWLPPQPSAEQAMRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        D           F      I    +   +  R    L+  L      
Sbjct: 73  GMLQRDGSGVDLCDCPLYPDSFAAVFAALKAFIPRAGLTPYSVARRRGELKYLLLTESRF 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           + +     V     +L  L  A      +L  AL      IQ +  A    + +I L   
Sbjct: 133 SGEMMLRFVLRSETKLAQLRQALPWLQAQLP-ALTVISVNIQPVHMAILEGEREIFLTS- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L+ +   +       SF Q N  +   +        + +   ++ +L+CG G F 
Sbjct: 191 --QQALSESFNGVPLYIRPQSFFQTNPAVAQALYAQARDWVQALGVTEMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     +  +EI+  ++  AR + A   +  V    + S  F               
Sbjct: 249 LHCATPEMTLTGIEISAEAIACARRSAAQLGLTQVNFAALDSSAFA-------------- 294

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
            D  S   + + V+PPR G+  A    +   A P+ILY SCN  S+ +D+  L+  + +E
Sbjct: 295 -DARSAAPQLVLVNPPRRGIGAALCDYLSRMAPPYILYSSCNAQSMVQDIERLAD-YRLE 352

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           ++ LFD FP+T H E   LLVR
Sbjct: 353 KVRLFDMFPHTAHYEVLTLLVR 374


>gi|161503956|ref|YP_001571068.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189045735|sp|A9MIM3|RUMB_SALAR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|160865303|gb|ABX21926.1| hypothetical protein SARI_02048 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 375

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 127/385 (32%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWRTPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
              +    L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TDQHA---LAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  AR + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACARQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       +   A   I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQIAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|229528169|ref|ZP_04417560.1| RNA methyltransferase TrmA family [Vibrio cholerae 12129(1)]
 gi|229334531|gb|EEO00017.1| RNA methyltransferase TrmA family [Vibrio cholerae 12129(1)]
 gi|327485907|gb|AEA80313.1| RNA methyltransferase, TrmA family [Vibrio cholerae LMA3894-4]
          Length = 375

 Score =  199 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 145/383 (37%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y QQ+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHLCAQPYSQQVENKDQQLRELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            + D Q +    +    +      + A +   +    + P         L+  L      
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTQSEN 132

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECA--IRLRDALHARKYQIQLIGRAN---KTKICLDRD 165
           + Q     V    H +L+   R           +      IQ +  A    + +I L + 
Sbjct: 133 SGQFMLRFVAR-SHAVLERIERNLPMLTAAFPMIEVISVNIQPVHMARLEGEEEIFLTK- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
              + L      +       SF Q N  +   +     A  + I    + +L+CG G F+
Sbjct: 191 --TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFA 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E      
Sbjct: 249 LHCAAPDTAVTGIEIEPEAIASAKRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL----- 303

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + 
Sbjct: 304 ----------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVKDIAELAS-YQMI 352

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+  FD FP+T H E   LLVRK
Sbjct: 353 RVQWFDMFPHTDHAEVLTLLVRK 375


>gi|238784965|ref|ZP_04628964.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia bercovieri
           ATCC 43970]
 gi|238714180|gb|EEQ06193.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia bercovieri
           ATCC 43970]
          Length = 403

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 141/382 (36%), Gaps = 41/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           S   L   Y QQLA+K   L  ++    V    + +F      +R +A+  +    +   
Sbjct: 38  SCQWLDRPYPQQLADKQHHLHDLLADHPVAQWLMPVF-GRESAFRNKAKMVVSGSVERPL 96

Query: 60  HIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDY 109
             M  +     +      +      I A++   +A   L P         L+  L     
Sbjct: 97  LGMLHRDGSAVDLCDCPLYPASFAPIFAVLKTFIARAGLTPYNVARKRGELKFLLLTESS 156

Query: 110 LTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDR 164
            + +     V     +L  L  A      +L   L      IQ +  A    + +I L +
Sbjct: 157 YSGELMLRFVLRSETKLAQLQAALPWLQQQLPQ-LAVISANIQPVHMAILEGEQEIPLTQ 215

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
               + L      +       SF Q N  +   +        + +    + +L+CG G F
Sbjct: 216 ---QQALPEQLNQVPLFIRPQSFFQTNPQVAALLYATARQWVRELSISSMWDLFCGVGGF 272

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A    ++  +EI+  ++  AR +     + NV    + S  F  A           
Sbjct: 273 GLHCAGPETQLTGIEISAEAIACARQSADQLGLKNVNFAALDSTRFATA----------- 321

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTI 341
                +   + + V+PPR G+       +   A   ILY SCN +++ +D+S L+  + I
Sbjct: 322 ----EAQVPQLVLVNPPRRGIGAELCDYLTQMAPKFILYSSCNAETMAKDISRLAD-YHI 376

Query: 342 ERLALFDQFPYTRHMECGVLLV 363
           ER+ LFD FP+T H E  VLLV
Sbjct: 377 ERVQLFDLFPHTAHYEVLVLLV 398


>gi|86133209|ref|ZP_01051791.1| RNA methyltransferase, TrmA family [Polaribacter sp. MED152]
 gi|85820072|gb|EAQ41219.1| RNA methyltransferase, TrmA family [Polaribacter sp. MED152]
          Length = 483

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 145/389 (37%), Gaps = 63/389 (16%)

Query: 17  KVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEF--------HIWHDGDDLYHIMFDQQT- 67
           KV+ +  +   F      I      HYR + E+         +     D + + F ++  
Sbjct: 117 KVENIEDLFDEF------ITSPNVFHYRNKMEYGFSAIGYDRVAKRDKDEFTLGFKRRGV 170

Query: 68  --------KERMRID-YFMPGSLLINALM----IEMMATIRLEPLLRAKLFQIDYLTSQS 114
                   K+    D  F      I        +      R +   R  + +  + T++ 
Sbjct: 171 WWMGDNLEKDSGLFDKEFEDHLKTIRKYCFDTGLAPWHGPRKDGFFRYFVVRKSFKTNKL 230

Query: 115 DQAIVTLIYHRLLDDAWRE-------CAIRLRDALHARKYQI--QLIGRANKTKICLDRD 165
              +VT  Y     D  +           R+   LH    ++  + I  +   ++   +D
Sbjct: 231 LFNLVTTSYDLPKFDLNKFASFLVDLFGDRVAGLLHTINDEVGDRTIATSGSIELVFGKD 290

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYCGN 220
            + E L      L +     SF Q N      +   V+      +  +     ++L+CG 
Sbjct: 291 KIVEELL----GLNFEISMKSFFQTNPKSAEKLYSKVVDYVLEDKSKVDNTVVMDLFCGT 346

Query: 221 GNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G    ++A      +++ V+I   ++E A+ N   N++  +K       +F         
Sbjct: 347 GTIGQIVASKSENAKIVGVDIVASAIEDAKENAKRNNIEGLKFYAADVGKF--------- 397

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335
              L     +  + KTI +DP R+G+   T+  +       ++Y+SCNP +  RD  +L 
Sbjct: 398 ---LTQHPEYQDKIKTIILDPARAGIMPKTLQKIINLNADRMVYVSCNPATQARDTELLR 454

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
              + I++++L DQFP+T H+E  VL  R
Sbjct: 455 EAGYEIKKISLVDQFPHTAHIETVVLFDR 483


>gi|200391026|ref|ZP_03217637.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199603471|gb|EDZ02017.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 375

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|153801402|ref|ZP_01955988.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae MZO-3]
 gi|124123068|gb|EAY41811.1| TrmA family RNA methyltransferase, putative [Vibrio cholerae MZO-3]
          Length = 375

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 147/382 (38%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S       Y QQ+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHQCAQPYSQQVENKDQQLRELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK----LFQIDYLTSQS 114
            + D Q +    +    +      + A +   +    + P  + K    L  I    S++
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 115 DQAIVTLIY---HRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           +   +       H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 NGQFMLRFVARSHAVLERIERNLPTLIAAFPTIEVISVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LLVRK
Sbjct: 354 VQWFDMFPHTDHAEVLTLLVRK 375


>gi|239814807|ref|YP_002943717.1| 23S rRNA 5-methyluridine methyltransferase [Variovorax paradoxus
           S110]
 gi|239801384|gb|ACS18451.1| RNA methyltransferase, TrmA family [Variovorax paradoxus S110]
          Length = 482

 Score =  198 bits (504), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 128/381 (33%), Gaps = 39/381 (10%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L   +                    HYR RA   + H      +     ++
Sbjct: 108 AQVAVKQRALEDNLWHLGKVRPDNVLRPLEGPAWHYRYRARLSVRHVVKKGTVLIGFHER 167

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT-----SQSDQAIVT 120
           +++    +         ++ +++ + A I      R    QI+        + S   I  
Sbjct: 168 KSRYLADMQVCPVLPKQVSDMLMPLRALIGSLDA-RETCPQIELACGDAPGTTSLGTIAL 226

Query: 121 LIYHRLLDDAWRECAIRLRD-ALHARKYQIQLIGRANKTKICL--DRDYVDERLTVAGRT 177
           ++ H  L+        RL+  A      Q  L  +   T   L      +   L   G T
Sbjct: 227 VLRH--LEPLSNADIGRLKAFAAQNAGVQWWLQAKGPDTVKLLEEGGMPLSYELPQFGVT 284

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           + ++     FTQ N  IN  ++   L          +++ +CG GNF+L LA     VL 
Sbjct: 285 MPFK--PTDFTQVNPHINRALVGKALRLLDVQADERVIDWFCGLGNFTLPLASRAREVLG 342

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E +   V  A  N + N         +S+  F         F     + +         
Sbjct: 343 IEGSDTLVARASDNFSKNQPATSARRALSATRFV----ARNLFEMTPAMLVADGSADKWL 398

Query: 297 VDPPRSGLDDATVGMVQAY-------------PHILYISCNPDSLCRDLSIL--STTHTI 341
           VDPPR G       M   +               I+Y+SCNP +L RD  +L     +  
Sbjct: 399 VDPPREGAFALAKAMADLHLQPELRTDGWTPPKRIVYVSCNPSTLARDAGLLVHQAGYRC 458

Query: 342 ERLALFDQFPYTRHMECGVLL 362
               + + FP+T H+E   + 
Sbjct: 459 TFAGVINMFPHTAHVESIAVF 479


>gi|238795809|ref|ZP_04639322.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia mollaretii
           ATCC 43969]
 gi|238720272|gb|EEQ12075.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia mollaretii
           ATCC 43969]
          Length = 401

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 134/383 (34%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K   L  ++    V   L         +R +A+  +    +    
Sbjct: 38  SCQWLDKPYPQQLADKQHHLEDLLAGHTVTQWLTPIFGRESAFRNKAKMVVSGSVERPLL 97

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        D           F      I    +      R    L+  L      
Sbjct: 98  GMLHRDGTAVDLCDCPLYPATFAPVFTVLKTFIAHAGLTPYNVARKRGELKFLLLTESTY 157

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           + +     V     +L  L  A      +L   L      IQ +  A    + +I L   
Sbjct: 158 SGELMLRFVLRSETKLAQLQAALPWLQQQLPQ-LAVISANIQPVHMAILEGEREIPLTE- 215

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 216 --QQALPEQFNQVPLFIRPQSFFQTNPQVAASLYATARQWVRELSISSMWDLFCGVGGFG 273

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EI+  ++  AR +     + NV    + S  F  A            
Sbjct: 274 LHCAGPETQLTGIEISAEAIACARQSADQLGLKNVSFAALDSTRFATA------------ 321

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +   + + V+PPR G+       +   A   ILY SCN +++ +D+S L+  + IE
Sbjct: 322 ---EAQVPQLVLVNPPRRGMGAELCDYLAQMAPEFILYSSCNAETMAKDISRLT-GYRIE 377

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+ LFD FP+T H E  +LL+ +
Sbjct: 378 RVQLFDLFPHTAHYEVLILLILR 400


>gi|16759792|ref|NP_455409.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142435|ref|NP_805777.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052506|ref|ZP_03345384.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213583498|ref|ZP_03365324.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213611249|ref|ZP_03370075.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647857|ref|ZP_03377910.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855247|ref|ZP_03383487.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|20455397|sp|Q8Z841|RUMB_SALTI RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|25322734|pir||AG0606 hypothetical RNA methyltransferase (EC 2.1.1.-) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502085|emb|CAD05321.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138065|gb|AAO69626.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 375

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|257063635|ref|YP_003143307.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
           heliotrinireducens DSM 20476]
 gi|256791288|gb|ACV21958.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
           heliotrinireducens DSM 20476]
          Length = 441

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 134/379 (35%), Gaps = 42/379 (11%)

Query: 10  YEQQLAEKVDRLRQMMLA---FQVPNLQIF------RSEPIHYRMRAEFHIWHDGDDLY- 59
           Y+ QL EK   +   +     F     +          +   YR + EF    D    + 
Sbjct: 84  YDWQLVEKRANVVSQLQRTAHFDPDRAEAIVAECKPSPKQFGYRNKLEFGCQIDPKRGFL 143

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAI 118
             +  + + + + +D        ++     +   +  L       ++++    S   ++ 
Sbjct: 144 MGLHRRGSDDVLPVDSCPLAQGPLSKTPKALKGALRYLSGSNDLGIYRVGVRQSARTRST 203

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDERLT 172
              ++           A  L +A+        + G   K       ++     Y  ER+ 
Sbjct: 204 EIALWTTPGPFPRATVAKTLGNAMKCTSIVRVMTGEGKKARKLKGVELLAGDGYWKERVA 263

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHF 231
                  ++    SF Q N      ++E  L   +  +G ++ +LYCG G F++ +A+  
Sbjct: 264 GQP----FKVSAPSFFQVNTEQAETLVELALDGLEIDEGSVVADLYCGVGTFTIPMAKTG 319

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+AVE    SV   R       +  + ++   +          RE   L  +D     
Sbjct: 320 AEVMAVESYGSSVRDLRRITEEEGL-YIDVIGGDAA---------RELPGLGHLDA---- 365

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFD 348
              + VDPPR+GLD   +  +       + Y+SC+P +  RD+  L      + +    D
Sbjct: 366 ---LLVDPPRAGLDATIIPAIAAAGPRRLAYVSCDPATWARDVKRLEDQGFELVKATPVD 422

Query: 349 QFPYTRHMECGVLLVRKPS 367
            FP T H+E   +   + +
Sbjct: 423 MFPQTHHVEIVSIFTNRKN 441


>gi|262173414|ref|ZP_06041091.1| RNA methyltransferase TrmA family [Vibrio mimicus MB-451]
 gi|261890772|gb|EEY36759.1| RNA methyltransferase TrmA family [Vibrio mimicus MB-451]
          Length = 375

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 148/382 (38%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S       Y QQ+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHQCAQPYSQQVENKDQQLRELIAPAMDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPTLIAAFPTIEVVSVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  H+LY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHVLYSSCNPQTMVKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LLVRK
Sbjct: 354 VQWFDMFPHTDHAEVLTLLVRK 375


>gi|198242601|ref|YP_002214847.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|226725411|sp|B5FPZ6|RUMB_SALDC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|197937117|gb|ACH74450.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326622600|gb|EGE28945.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 375

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCSPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|262403007|ref|ZP_06079567.1| RNA methyltransferase TrmA family [Vibrio sp. RC586]
 gi|262350506|gb|EEY99639.1| RNA methyltransferase TrmA family [Vibrio sp. RC586]
          Length = 377

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 149/382 (39%), Gaps = 37/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S       Y QQ+  K  +LR++++    V  L    S    +R +A+  +         
Sbjct: 13  SCHQCAQPYSQQVENKDQQLRELIVPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQYMLRFVARSHAVLERIERNLPTLIAAFPTIEVVSVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPNTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVKDIAELAS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +  FD FP+T H E   LLVRK
Sbjct: 354 VQWFDMFPHTDHAEVLTLLVRK 375


>gi|194443652|ref|YP_002040122.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|226725413|sp|B4T0E3|RUMB_SALNS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|194402315|gb|ACF62537.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 376

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCACPLYPASFAPVFSTLKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLRR 374


>gi|153949749|ref|YP_001401605.1| 23S rRNA methyluridine methyltransferase [Yersinia
           pseudotuberculosis IP 31758]
 gi|170024950|ref|YP_001721455.1| 23S rRNA methyluridine methyltransferase [Yersinia
           pseudotuberculosis YPIII]
 gi|167012649|sp|A7FK27|RUMB_YERP3 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725418|sp|B1JRJ4|RUMB_YERPY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|152961244|gb|ABS48705.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia
           pseudotuberculosis IP 31758]
 gi|169751484|gb|ACA69002.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia
           pseudotuberculosis YPIII]
          Length = 376

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 136/380 (35%), Gaps = 39/380 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K   L  ++    V   L +       +R +A+  +    +    
Sbjct: 13  SCQWLDKPYPQQLADKQHHLESLLAGHAVTQWLALVFGRESAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M  +     +      + P    +  ++   +A   L P         L+  L      
Sbjct: 73  GMLHRDGTPVDLCACPLYPPSFEPVFTVLKTFIARAGLTPYNVARKRGELKFLLLTESTY 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
             +     V     +L  L  A      +L   L      IQ +  A    + +I L   
Sbjct: 133 NGELMLRFVLRSETKLAQLTAALPWLQQQLPQ-LAVISANIQPVHMAILEGEREIPLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        +  +   + +L+CG G F 
Sbjct: 191 --QQALPERFNQVPLYIRPQSFFQTNPPVAASLYATARQWVQEHEVHSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EI+  ++  AR +     + NV    + S  F  A            
Sbjct: 249 LHCAGPETQLTGIEISAEAIACARQSAEQLGLKNVSFAALDSTRFATA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +   + + V+PPR G+       +   A   ILY SCN +++ +D+S+L   + IE
Sbjct: 297 ---EAQIPELVLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMAKDISLL-AGYHIE 352

Query: 343 RLALFDQFPYTRHMECGVLL 362
           R+ LFD FP+T H E   LL
Sbjct: 353 RVQLFDMFPHTSHYEVLTLL 372


>gi|260556074|ref|ZP_05828293.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii ATCC 19606]
 gi|260410129|gb|EEX03428.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acinetobacter
           baumannii ATCC 19606]
          Length = 463

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 152/377 (40%), Gaps = 31/377 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWH--DG 55
             ++     ++Q+  K + L+   Q     Q    L+  RS    YR RA   + +    
Sbjct: 98  GCSMQHIHPDEQIRLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQ 157

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D L     +  +     I         ++  + E+   ++     +A +  ++      +
Sbjct: 158 DRLILGFREHHSNRLTSIHTCSVLDKKLSDSLPELRNLLQSLK-GKAHIGHVELAKGDHE 216

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--V 173
            +++     R ++        +LR     + +Q+ L  +  ++   +D +    RL   +
Sbjct: 217 TSLLV----RHIEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGPMRLHYAL 272

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               + +      FTQ NA +N  M++      +  QG+ +L+L+CG GNFSL LAR   
Sbjct: 273 NAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVG 332

Query: 233 RVLAV---EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V   E ++  V+ A  N   N++         S++ T+        N+        
Sbjct: 333 AKGVVVGVEASEEMVQRATDNAKRNNLVQASFF---SQDLTKDFSHHSWANQ-------- 381

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             F  + +DPPR+G  +    +       I+Y+SCNP +L RD  +L    + +++ A+ 
Sbjct: 382 -GFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVM 440

Query: 348 DQFPYTRHMECGVLLVR 364
           D F +T H+E   L  +
Sbjct: 441 DMFTHTEHVESIALFEK 457


>gi|254467847|ref|ZP_05081253.1| 23S rRNA (uracil-5-)-methyltransferase [beta proteobacterium KB13]
 gi|207086657|gb|EDZ63940.1| 23S rRNA (uracil-5-)-methyltransferase [beta proteobacterium KB13]
          Length = 437

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 148/378 (39%), Gaps = 35/378 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-----IHYRMRAEFHIWH--D 54
             ++   ++  Q+  K +   Q +        +  + EP       YR +A     +   
Sbjct: 76  GCSMQHFKHSSQIEFKNNAFFQTLKHVGKVVPES-QIEPIFLEFSEYRHKARLRAKYVDK 134

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            D +     ++ T     +D        I++ + E+ + I+   +   ++ QI+Y ++  
Sbjct: 135 KDKVLVGFNERLTHFLTDMDSCEVLPGRISSCLGEIKSLIKNLSIY-NRMPQIEYASNGD 193

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--ICLDRDYVDERLT 172
               +     R+LD    E   +L +  +AR  +I    +  +T   +  +RD       
Sbjct: 194 RDIFI----FRILDPLSIEDIKKLSEFSNARNIEIWTQSKGPETVKPLFPERDSEIISYP 249

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
           +A   L      + F Q N  IN  M++  L       Q ++++ + G GNF+L +A++ 
Sbjct: 250 IAKYELNLEFNPSGFIQINPYINQLMIDKALELLNLNPQDEVVDFFSGLGNFTLPIAKYA 309

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+ +E ++  V   + N   N++NNV     +  E         +             
Sbjct: 310 HSVIGIEGSEDLVNLGQKNAGLNNLNNVSFQYSNLFEVDVDFVNSLK------------N 357

Query: 292 FKTIFVDPPRSGLDDATVGMVQA----YPHILYISCNPDSLCRDLSIL--STTHTIERLA 345
                +DPPR G     + ++         I+Y+SCNP +L RD +IL     +  +   
Sbjct: 358 KNKWLLDPPRDGA-MQLLELISKDTMLPETIVYVSCNPATLARDANILVNDKGYKYQSAG 416

Query: 346 LFDQFPYTRHMECGVLLV 363
           + + FP+T H+E   L  
Sbjct: 417 ILNMFPHTSHIESISLFT 434


>gi|290999475|ref|XP_002682305.1| S-adenosylmethionine-dependent methyltransferase [Naegleria
           gruberi]
 gi|284095932|gb|EFC49561.1| S-adenosylmethionine-dependent methyltransferase [Naegleria
           gruberi]
          Length = 580

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 86/443 (19%), Positives = 148/443 (33%), Gaps = 89/443 (20%)

Query: 5   LLIDQYEQQLAEKV----DRLRQMMLAFQV--------------PNLQIFR--------- 37
           L    YE+QL +K     D +R+M    +               P  +  +         
Sbjct: 142 LAHLTYEEQLVKKEGETLDCMREMFSEIKKSYGTAELPEYYTIQPEDEKLKDVHLTWCGI 201

Query: 38  -SEPI--HYRMRAEFHIWHDGDD----------LYHIMFDQQTKERMRI--DYFMPGSLL 82
            S P    YR   EF   ++ +D              +F+ ++ + ++I  D      L+
Sbjct: 202 LSSPQTEGYRNNCEFTCGYNSEDKPTVGFRQGLFSQGIFNAESPKDVKIVSDSMKRAVLV 261

Query: 83  INALMIEMMATIRLEPLLRA----KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL 138
           +   + +   T +           +L ++    +     IV +    + ++A +     L
Sbjct: 262 LQKFIEQHHDTYKCYAQKTHTGLWRLMKVRENRNGEMLIIVQINPTEISEEAMQTIKTNL 321

Query: 139 ------RDALHARKYQIQL----------IGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                  D   +    I +          +  A  T   LD  Y ++ +      L +  
Sbjct: 322 ISHFKSFDKNESSDLSINVKGLFLQQHTGVSNAAPTDAPLDLLYGEQTIVEEVLGLKFNI 381

Query: 183 IENSFTQPNAGINVHML----EWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVL 235
              SF Q N      +     EW L +          LL++  G G     +A    RV+
Sbjct: 382 SPMSFFQVNTKGVEVLYSKVKEWTLESMDKESNKERVLLDVCSGTGTIGSTMASSVSRVI 441

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +E+ + SV  AR N   N++ N+  V   +++       E   N        S      
Sbjct: 442 GIEMVESSVNDARKNAQLNNIQNITFVCGKAEDTITTKMVEHNLN-------SSNVECVA 494

Query: 296 FVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTT----------HTIE 342
            VDPPRSGL    +  +   P I   +Y+SCNP +L  +   L                 
Sbjct: 495 VVDPPRSGLHKKVLESILRSPTIEKLIYVSCNPKTLVENAIRLCGPTSTVRASYGAFKPV 554

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           +    D FP+T H E   +  RK
Sbjct: 555 KAIAVDMFPHTEHCEMICVFERK 577


>gi|297614535|gb|ADI48566.1| putative 23S rRNA 5-methyluridine methyltransferase [uncultured
           bacterium fss6]
          Length = 328

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/351 (21%), Positives = 141/351 (40%), Gaps = 32/351 (9%)

Query: 24  MMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ--QTKERMRIDYFM 77
           M+  F        L+    +  HYR RA   + +D       M  +  ++K    ID  +
Sbjct: 1   MLAKFAQVEALQWLEPLAGDAWHYRRRARLAVHYDAKRQQFKMGFRAPKSKRITVIDACL 60

Query: 78  PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137
             +  +N L+  +   +    L++ +L  ++ +  + +  +V L+  R     W   + +
Sbjct: 61  VLAESLNKLIAPLQHLLPQLELVK-QLGHVELI--EFEHQVVVLLRLR----EWPTASDQ 113

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
                 ++ Y + +   + +    L      E L+     +       +F Q +  ++  
Sbjct: 114 NHLEQFSKTYNVAIWCDSEQQLAPLSTS---EPLSYRTVGMSIHCSPTNFIQAHRQLSEI 170

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           M+E  L        D +LELY G+GNFSL +A    +V A+E     V+  + N     V
Sbjct: 171 MVEQALTWLDIQPSDKVLELYAGSGNFSLPMALAGAQVTAIEGVASMVDQLKANAHRAQV 230

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           N          +  Q+   +   N          ++  + +DP R+G   A   +    P
Sbjct: 231 NLAAF----CTDLEQSWSSQAWSNE---------QYTKVLLDPARAGAPHAIQEVATRQP 277

Query: 317 -HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
             I+Y+SC PD+L RD  +L    + +++  + D FP T H+E   L  R+
Sbjct: 278 QRIVYVSCAPDTLARDAKVLKESGYQLKQAQVVDMFPQTHHIEVMTLFERE 328


>gi|262275255|ref|ZP_06053065.1| RNA methyltransferase TrmA family [Grimontia hollisae CIP 101886]
 gi|262220500|gb|EEY71815.1| RNA methyltransferase TrmA family [Grimontia hollisae CIP 101886]
          Length = 361

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 144/375 (38%), Gaps = 34/375 (9%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
            Y QQ+AEK   L+ +         L    SE    R +A+  +             +  
Sbjct: 2   PYTQQVAEKDSALKALFANRLPEQWLPPVLSEETGCRNKAKMVVLGAAHQPVLGADVRGG 61

Query: 68  KER--MRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKL-----FQIDYLTSQSDQA 117
           +    + + +    +  + AL+    + + T  + P  +AK      F +    + + + 
Sbjct: 62  EAPEWVSLTHCPLYTQDMQALLDYLQDWIRTSGIPPYNKAKKKGELKFILLTRAAHTGEF 121

Query: 118 IVTLIY-HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-YVDER--LTV 173
           ++  +   R           RL DA  A +     +   +  ++  D + Y+ E   L  
Sbjct: 122 MLRFVMRSREALPRVNANLARLCDAFPAIRVVSVNLQPVHMARLEGDEEIYLTEEQHLIE 181

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD 232
               +       SF Q N  I   +        K I    + +L+CG G F+L  A    
Sbjct: 182 RFNDVPLVVRPKSFFQTNPDIAAKLYATAREWVKEIAPARMWDLFCGVGGFALHCAPVAG 241

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V  +EI   ++ +A+ + A   ++N+    + S  F+                 H    
Sbjct: 242 AVTGIEIEPEAIASAKRSAAEIGISNLDFDALDSAAFSL---------------CHDTAP 286

Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
             + V+PPR GL    V  +   +  HI+Y SCNPD+L  DL      + ++RL  FD F
Sbjct: 287 DLVLVNPPRRGLGQTLVTQLAQLSPKHIIYSSCNPDTLRSDLDGFD-GYAVKRLQWFDMF 345

Query: 351 PYTRHMECGVLLVRK 365
           P+TRH E  VLL ++
Sbjct: 346 PHTRHAEVMVLLEKR 360


>gi|317124930|ref|YP_004099042.1| 23S rRNA m(5)U-747 methyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315589018|gb|ADU48315.1| 23S rRNA m(5)U-747 methyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 394

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 97/387 (25%), Positives = 159/387 (41%), Gaps = 32/387 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           S TL+   Y  QLA K +R R  +      V  L+ F      +R +A+  +      + 
Sbjct: 13  SCTLMGVPYAAQLASKQERCRAALAGSATSVSWLEPFAGPENAFRNKAKLVVGGRRGAVT 72

Query: 60  HIMFDQQTKER--MRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTSQ 113
             + D + +         + PG   +   + +++  + LEP      R +L  +    S 
Sbjct: 73  VGILDAENRGVDLRDCGLYEPGLQDLVPRVADLVDDLLLEPYDIPTRRGELKHLLLTRSP 132

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRL-RDALHAR---KYQIQLIGRA---NKTKICLDRDY 166
           + + ++  +     D A     + + +D L         IQ + +A     T++ L R  
Sbjct: 133 TSEVMLRFVLRSQRDLALLRARLHIVQDRLPEVVVVSVNIQPVHQAVIEGPTEVVLTRA- 191

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
             + LT+    +      NSF Q N  +   +   V      +    +L+LYCG G F+L
Sbjct: 192 --DALTMPVNGIALHLRPNSFFQTNTEVASALYRQVDEWVDRVDPAQVLDLYCGVGGFAL 249

Query: 226 VLARHFD----RVLAVEIAKPSVEAARYNIA--ANHVNNVKIVRMSSKEFTQAMRREREF 279
             AR       RV+ VE++  +VE+AR + A      +++  V   S + T A       
Sbjct: 250 HAARSGRLGRRRVMGVEVSPDAVESARRSAAELRRQHSDLGPVCFQSGDATAAGALGGAG 309

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
           +       H      + V+PPR G+     G ++A    H++Y SCN DSL RDL  L +
Sbjct: 310 SEEARPGAH----TLVIVNPPRRGIGPDLAGRLEASQVGHVVYSSCNVDSLARDLEALPS 365

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
             +     LFD FP T H E  VLL R
Sbjct: 366 -FSAREARLFDMFPQTSHHEVAVLLER 391


>gi|163788804|ref|ZP_02183249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacteriales
           bacterium ALC-1]
 gi|159876041|gb|EDP70100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacteriales
           bacterium ALC-1]
          Length = 484

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 145/409 (35%), Gaps = 76/409 (18%)

Query: 11  EQQLAEKVDRLRQMMLAFQVP-NLQ------IFRSEPIHYRMRAEFHIW----------- 52
           E+Q   K     ++        +++      +      HYR + E+              
Sbjct: 98  EKQHEYKKQSTLELFKRIGKVTDIESKFDEFVDSPNTFHYRNKMEYGFSAIGYDRELKTD 157

Query: 53  ----------------HDGDDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIR 95
                            D       +FD +       I  +   + L            +
Sbjct: 158 VDEFTLGFKRRGTWWCGDNLKKDSGLFDAEFENHLKDIKTYCEATGL------APWHAPK 211

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE-------CAIRLRDALHARKYQ 148
            E   R  + +  Y T++    +VT  Y     D  +           R+   LH    +
Sbjct: 212 REGFFRYFVVRKSYKTNKLLFNLVTTSYDLPEFDLDKFANYLVELFGERVAGLLHTINDE 271

Query: 149 IQLIGRANKTKI--CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
           I     A    I      D + E L      L +     SF Q N      +   V+   
Sbjct: 272 IGDRTIATTGHINLVYGDDKIVEELL----GLNFEISMKSFFQTNPKCAEKLYSKVVDYA 327

Query: 207 KGIQGD-----LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
             I+       +L+L+CG G    ++A   +  +++ V+I   ++E A+ N   N++  +
Sbjct: 328 LEIKEAIDNTVVLDLFCGTGTIGQIIASKANNTKIVGVDIVASAIEDAKENAKRNNIEGL 387

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317
           +       +F            L +   ++ + +TI +DP R+G+   T+  +       
Sbjct: 388 QFYAADVGKF------------LNEHPEYTNKIRTIILDPARAGIAPKTLKKIINLNADR 435

Query: 318 ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++Y+SCNP +  RD   L  + + I++++L DQFP+T H+E  VL  +K
Sbjct: 436 LVYVSCNPATQARDTEQLMLSGYEIKKMSLVDQFPHTAHIETVVLFEKK 484


>gi|238913400|ref|ZP_04657237.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 376

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/386 (20%), Positives = 131/386 (33%), Gaps = 47/386 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSINEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 -DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGN 220
            D+  + ER       +       SF Q N  +   +          +    + +L+CG 
Sbjct: 189 TDQQALVERF----NDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGV 244

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A        
Sbjct: 245 GGFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFAIA-------- 296

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTT 338
                         + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   
Sbjct: 297 -------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN- 348

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + I+R+ LFD FP+T H E   LL R
Sbjct: 349 YRIQRVQLFDMFPHTAHYEVLALLRR 374


>gi|114685137|ref|XP_001166807.1| PREDICTED: HpaII tiny fragments locus 9C isoform 1 [Pan
           troglodytes]
 gi|114685139|ref|XP_001166936.1| PREDICTED: HpaII tiny fragments locus 9C isoform 2 [Pan
           troglodytes]
 gi|114685141|ref|XP_001167055.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 5
           [Pan troglodytes]
          Length = 625

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 131/421 (31%), Gaps = 76/421 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 179 PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQTE 238

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 239 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 298

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDALHA--- 144
                           Q+   TS+  QA+    +H  +L  +   E    L     A   
Sbjct: 299 TPYSAYDPETYTGHWKQLTVRTSRRRQAMAIAYFHPQKLSPEELEELKTSLAQHFTAGPG 358

Query: 145 -RKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                  L       +       + L+    D  +      L +R   ++F Q N     
Sbjct: 359 RASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +    +   G  +L++ CG G   L LAR   RV+ VE+   +VE AR N   N 
Sbjct: 419 VLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 478

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV+     +++    +        L              +DPPR+GL    +  ++  
Sbjct: 479 LSNVEFHCGRAEDLVPTLVSRLASQHL-----------VAILDPPRAGLHSKVILAIRRA 527

Query: 316 P---HILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
                +LY+SCNP +   +   L                +    D FP T H E  +L  
Sbjct: 528 KNLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFE 587

Query: 364 R 364
           R
Sbjct: 588 R 588


>gi|213428046|ref|ZP_03360796.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 375

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCAAPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|210630035|ref|ZP_03296220.1| hypothetical protein COLSTE_00104 [Collinsella stercoris DSM 13279]
 gi|210160712|gb|EEA91683.1| hypothetical protein COLSTE_00104 [Collinsella stercoris DSM 13279]
          Length = 405

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 133/412 (32%), Gaps = 66/412 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF---------------QVPNLQIFR--------S 38
               L   Y +QL  K   + ++                     P+ +           +
Sbjct: 6   GCEWLGLPYRKQLKRKHAAMIELYEPLIGRFGWNVHVDDALGMGPSREAGPVTAADSPLA 65

Query: 39  EPIHYRMRAEFHIW-HDGDDLYHIMFDQQTKERMRIDYFMP----GSLLINALM------ 87
            P  +R +A          ++    F + T   +              L+N +       
Sbjct: 66  SPRAFRHKASTPFAPGPHGEVRCGFFARGTHTIVPCPACPVEAPGARELLNEVARLASDF 125

Query: 88  -IEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDAL 142
            I      R +  LR  + +  + T++S   +VT        DA  +   R    +    
Sbjct: 126 GIPAYDEDRRQGQLRYAVLRCGWRTNESMLTLVTRTREVPHLDALAQAIAREHPGIVTIA 185

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                ++       +T++   +     R+        +     SF Q N      + +  
Sbjct: 186 QNVNPRVTNAILGGETRLLHGKP----RMRDQLLDCTFEISPVSFYQVNPQQTEVLYQSA 241

Query: 203 LAATKGIQGD-LLELYCGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANH 255
           +   +  +GD +L+ YCG+G   L  A          R++ VE     V  A+ N   N 
Sbjct: 242 IEGMQLREGDTVLDTYCGSGTIGLAAAASARANGAHVRLIGVERNVEGVRDAQRNAQVNG 301

Query: 256 VNNV-KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ- 313
           + ++   +   + E+ +            +          + +DPPR+G   A V     
Sbjct: 302 LEDMSDFIARDATEYMR------------EAAEQGLNVDVLIMDPPRAGSAPAFVEAATT 349

Query: 314 -AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
                I+YISCNP +  RDL       + ++RL   D FP+T H E    L 
Sbjct: 350 LRPRRIVYISCNPVTHVRDLEQFGEAGYRVDRLTPVDLFPHTTHTEMIATLT 401


>gi|183598310|ref|ZP_02959803.1| hypothetical protein PROSTU_01699 [Providencia stuartii ATCC 25827]
 gi|188020483|gb|EDU58523.1| hypothetical protein PROSTU_01699 [Providencia stuartii ATCC 25827]
          Length = 375

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 136/373 (36%), Gaps = 39/373 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMFDQQTK- 68
           +QQL  K + L  ++        Q   + P+  +R +A+  +    +     + + Q + 
Sbjct: 22  DQQLKLKQENLVSLLPMVTTDAFQSPVASPLAGFRNKAKMVVSGSVEKPILGIVNSQGQA 81

Query: 69  -ERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYLTSQSDQAIV 119
                   +      +  ++   +A   L P         L+  L      T +     V
Sbjct: 82  ISLTDCPLYPEPFSAVFDVIKPFIARAGLTPYNIERKRGELKYLLLTQSQHTGEFLLRFV 141

Query: 120 TLIYHR--LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA 174
                +   L +A      +L   L      +Q +  A    + +I L    V   L   
Sbjct: 142 LRSEKKVEQLKNALPWLQQQLPQ-LAVITVNLQPVHMAILEGEQEIYLTEQQV---LREQ 197

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
              +      +SF Q N  +   + +      K +    L +L+CG G F L  A    +
Sbjct: 198 LNQVPLFIRPHSFFQTNPVVAARLYQTAREWVKKLNITSLWDLFCGVGGFGLHCAEKQTQ 257

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +  +EI+ P++  A+ +     + +V+   + S +F  A                    +
Sbjct: 258 LTGIEISAPAIACAKQSAQELGLQHVEFQALDSTKFATA---------------KGNIPQ 302

Query: 294 TIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+       +       ILY SCN  ++ +D+  L   + + ++ LFD FP
Sbjct: 303 LVLVNPPRRGIGKELCEYLSTMRPNYILYSSCNAQTMAKDIEQL-EGYAVSKVQLFDMFP 361

Query: 352 YTRHMECGVLLVR 364
           +T H E   LLV+
Sbjct: 362 HTAHYEVIALLVK 374


>gi|146311031|ref|YP_001176105.1| 23S rRNA methyluridine methyltransferase [Enterobacter sp. 638]
 gi|167012639|sp|A4W8M4|RUMB_ENT38 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|145317907|gb|ABP60054.1| 23S rRNA m(5)U-747 methyltransferase [Enterobacter sp. 638]
          Length = 375

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 133/381 (34%), Gaps = 37/381 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     QQL+ K+  L+Q++ A  V             +R +A+  +    +    
Sbjct: 13  SCQWIEQPVSQQLSAKMTDLQQLLAAHPVAEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M  +    ++      +      + A +   +A   L P         L+  L     L
Sbjct: 73  GMLHRDGTPEDLTDCPLYPASFEPVFAALKPFIARAGLTPYNVERKRGELKYLLLTESQL 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA--NKTKICLDRDY 166
                   +     +L  L  A      +L   L      IQ +  A     +     D 
Sbjct: 133 DGGMMLRFILRSEAKLEQLRAALPWLQQQLPQ-LKVITANIQPVHMAIMEGEREVFFTD- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +      +SF Q N  +   +        + +    + +L+CG G F L
Sbjct: 191 -QQALAERFNDVPLWIRPHSFFQTNPTVASQLYATARDWVRALNIHHMWDLFCGVGGFGL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     +  +EI+  ++  A+ + A   + ++    + S EF     R  E       
Sbjct: 250 HCATPQMTLTGIEISPEAIACAKQSAAQLGLTDLHFQALDSAEFATGQGRVPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR G+       +   A   I+Y SCN  ++ +D   L   + +ER
Sbjct: 304 ---------VLVNPPRRGIGKTLCDYLSQMAPDFIIYSSCNAQTMAKDFGHL-PGYRVER 353

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           + LFD FP+T H E   LLV+
Sbjct: 354 VQLFDMFPHTAHYEVLTLLVK 374


>gi|325274862|ref|ZP_08140877.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas sp. TJI-51]
 gi|324100010|gb|EGB97841.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas sp. TJI-51]
          Length = 452

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 145/371 (39%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEPIHYRMRAEFHIWHD--G 55
             TL    +E QLA K   L + +                     YR RA   +  D   
Sbjct: 101 GCTLQHLPHEAQLALKQRTLAEQLQRVAGVQPDAWAPPLSGPAFGYRRRARVAVRWDVKA 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +L+     + +++ + ID        + +++  +   +R     +A L  ++  +  ++
Sbjct: 161 RELHVGFRAEASQDIIAIDDCPVLVQPLQSILRHLPTVLRSLEKPQA-LGHVELFSGSAE 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +V     R +     +   RL+        Q+ L G      +          L    
Sbjct: 220 ALLV-----RHVAPLPAQDLARLQAFCEQANAQLWLQGEGEPAPVGPAAPLGF-ALAPWQ 273

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  LA       + +L+L+CG GNF+L LAR    V
Sbjct: 274 LELAWR--PGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREV 331

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  V+ A  N   N+V+N +  +    +             L      +  F  
Sbjct: 332 VAVEGVQAMVDRAAANARNNNVHNARFFQADLSQ------------PLAGTGWAAEGFSA 379

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
           + +DPPR G  +   G+ +     ++Y+SCNP +L RD  +L+   + + R  + D FP 
Sbjct: 380 VLLDPPRDGAYEVVQGIARLKASRLVYVSCNPATLARDAQVLAGQGYRLTRAGILDMFPQ 439

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 440 TAHVEAMALFE 450


>gi|304397037|ref|ZP_07378916.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. aB]
 gi|304355186|gb|EFM19554.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pantoea sp. aB]
          Length = 379

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 138/385 (35%), Gaps = 38/385 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y  QL++K   L Q++        L    S    +R +A+  +    +    
Sbjct: 13  SCQWLEKPYPIQLSDKQSMLEQLLAEQPVTAWLPPVTSPQQAFRNKAKMVVSGSVERPVL 72

Query: 61  I--MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
                D +  +      +      +   +   +A   L P      R +L  +    SQ 
Sbjct: 73  GLIHRDGEAVDLCDCPLYPASFQPVFTALKPFIARAGLTPYNVARKRGELKFLLITESQQ 132

Query: 115 DQAIVTLI-----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
              ++  +         L  A      +L   L      IQ +  A    + +I L    
Sbjct: 133 GGIMLRFVLRSTAKLEQLRAALPWLQQQLPQ-LAVISANIQPVHMAILEGEEEIALTPA- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             + L      +       SF Q N  +   +        + +    + +L+CG G F L
Sbjct: 191 --QSLAENFNGVPLWIRPQSFFQTNPQVASALYATARDWVRALPVNSMWDLFCGVGGFGL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     +  +EI+  +++ A+ +     +  V+   + S  F                
Sbjct: 249 HCATPEMELTGIEISAEAIKCAQRSAEMLGLEKVQFAALDSTSFATG------------- 295

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                  + + V+PPR G+ +A    +   A  ++LY SCNP ++ +D++ LS  + + +
Sbjct: 296 --RDAVPQLVLVNPPRRGIGEALCDYLSQMAPDYLLYSSCNPQTMVQDIARLSA-YEVTK 352

Query: 344 LALFDQFPYTRHMECGVLLVRKPSG 368
           + LFD FP+T H E   LL R+  G
Sbjct: 353 VQLFDMFPHTAHFEVLTLLTRRHHG 377


>gi|143811455|sp|Q8EI67|RUMB_SHEON RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
          Length = 386

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 135/381 (35%), Gaps = 52/381 (13%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           QQLA K   L+Q++  F V     F          +R +A+  +          +     
Sbjct: 27  QQLAAKTQELQQLLAPFVVSTNTQFLPPVVGEDSGFRNKAKMVVLGAAHAPVLGIVSPNG 86

Query: 68  KERMRIDYFM-PGSLL---------INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +     D  + P  +          +    I      + +  L+  L     +  +    
Sbjct: 87  EAVSLCDCLLYPADMQALLYRLERFVQQAGIPPYRIDKAKGELKYILLTRSQVRGEYMLR 146

Query: 118 IVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVD 168
            V           R L     E        ++     IQ I  A      L+ D   ++ 
Sbjct: 147 FVLRSPDAIARIERELPALMAEYPQ-----INVVSVNIQPIHMA-----ILEGDEEIFLT 196

Query: 169 E--RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           E  RL      +       SF Q N  +   + +             L +L+CG G F L
Sbjct: 197 ENTRLEERFNDVPLFIRPKSFFQTNPHVAAKLYQTAREWVGEFAPKSLWDLFCGVGGFGL 256

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     +  +EI   ++  A+ +     ++NV+ + + S +F +              
Sbjct: 257 HCASKDIPLTGIEIEAEAIACAKMSAQMMGLDNVQFMALDSTDFAKG------------- 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
           D  + +   I V+PPR G+ ++    +   A   ILY SCNP +L +DL  +   + + R
Sbjct: 304 DAAATKPDLIIVNPPRRGIGESLCDALSEFAPRAILYSSCNPKTLAKDLVHI-RGYQLTR 362

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           + LFD FP++ H E   +LV+
Sbjct: 363 VQLFDLFPHSDHFEVLAMLVK 383


>gi|26988387|ref|NP_743812.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida
           KT2440]
 gi|37088377|sp|Q88MB9|RUMA_PSEPK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|24983141|gb|AAN67276.1|AE016354_3 RNA methyltransferase, TrmA family [Pseudomonas putida KT2440]
          Length = 452

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 141/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L    +E QLA K   L + +        +            YR RA   +  D   
Sbjct: 101 GCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRARVAVRWDVKA 160

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                    + +++ + ID        + +++  +   +R     +A L  ++  +  ++
Sbjct: 161 RQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKPQA-LGHVELFSGTAE 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +V     R +     E   RL+        Q+ L G      +            +A 
Sbjct: 220 AVLV-----RHVAPLPAEDQARLQAFCEQANAQLWLQGEGEPAPV---DPAAQLGFALAP 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L        F Q NA +N  M+E  LA       + +L+L+CG GNF+L LAR    V
Sbjct: 272 WQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREV 331

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  V+ A  N   N+V+N +  +    +             L      +  F  
Sbjct: 332 VAVEGVQAMVDRAAANARNNNVHNARFFQADLSQ------------PLAGTGWAAEGFSA 379

Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP 
Sbjct: 380 VLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQ 439

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 440 TAHVEAMALFE 450


>gi|148549269|ref|YP_001269371.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida F1]
 gi|148513327|gb|ABQ80187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudomonas putida F1]
          Length = 452

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 141/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L    +E QLA K   L + +        +            YR RA   +  D   
Sbjct: 101 GCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRARVAVRWDVKA 160

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                    + +++ + ID        + +++  +   +R     +A L  ++  +  ++
Sbjct: 161 RQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKPQA-LGHVELFSGTAE 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +V     R +     E   RL+        Q+ L G      +            +A 
Sbjct: 220 AVLV-----RHVAPLPAEDQARLQAFCEQANAQLWLQGEGEPAPV---DPAAQLGFALAP 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L        F Q NA +N  M+E  LA       + +L+L+CG GNF+L LAR    V
Sbjct: 272 WQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREV 331

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  V+ A  N   N+V+N +  +    +             L      +  F  
Sbjct: 332 VAVEGVQAMVDRAAANARNNNVHNARFFQADLSQ------------PLAGTGWAAEGFSA 379

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP 
Sbjct: 380 VLLDPPRDGAFEVVQGIARLKASRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQ 439

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 440 TAHVEAMALFE 450


>gi|24372567|ref|NP_716609.1| 23S rRNA methyluridine methyltransferase [Shewanella oneidensis
           MR-1]
 gi|24346584|gb|AAN54054.1|AE015542_10 RNA methyltransferase, TrmA family [Shewanella oneidensis MR-1]
          Length = 382

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 135/381 (35%), Gaps = 52/381 (13%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           QQLA K   L+Q++  F V     F          +R +A+  +          +     
Sbjct: 23  QQLAAKTQELQQLLAPFVVSTNTQFLPPVVGEDSGFRNKAKMVVLGAAHAPVLGIVSPNG 82

Query: 68  KERMRIDYFM-PGSLL---------INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +     D  + P  +          +    I      + +  L+  L     +  +    
Sbjct: 83  EAVSLCDCLLYPADMQALLYRLERFVQQAGIPPYRIDKAKGELKYILLTRSQVRGEYMLR 142

Query: 118 IVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVD 168
            V           R L     E        ++     IQ I  A      L+ D   ++ 
Sbjct: 143 FVLRSPDAIARIERELPALMAEYPQ-----INVVSVNIQPIHMA-----ILEGDEEIFLT 192

Query: 169 E--RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           E  RL      +       SF Q N  +   + +             L +L+CG G F L
Sbjct: 193 ENTRLEERFNDVPLFIRPKSFFQTNPHVAAKLYQTAREWVGEFAPKSLWDLFCGVGGFGL 252

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     +  +EI   ++  A+ +     ++NV+ + + S +F +              
Sbjct: 253 HCASKDIPLTGIEIEAEAIACAKMSAQMMGLDNVQFMALDSTDFAKG------------- 299

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
           D  + +   I V+PPR G+ ++    +   A   ILY SCNP +L +DL  +   + + R
Sbjct: 300 DAAATKPDLIIVNPPRRGIGESLCDALSEFAPRAILYSSCNPKTLAKDLVHI-RGYQLTR 358

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           + LFD FP++ H E   +LV+
Sbjct: 359 VQLFDLFPHSDHFEVLAMLVK 379


>gi|108758357|ref|YP_631969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myxococcus xanthus DK
           1622]
 gi|108462237|gb|ABF87422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myxococcus xanthus DK
           1622]
          Length = 431

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 141/366 (38%), Gaps = 37/366 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-------IHYRMRAEFHIWHDGDDLYHIMF 63
             Q + K + +   +          F   P         YR RA   + H         F
Sbjct: 89  PAQRSAKQEIVLSTLEHLGHLARDSFTVRPLLVAPRDWGYRRRA---VLHPAGKGALGYF 145

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR--AKLFQIDYLTSQSDQAIVTL 121
            +++ ER+ ++     + ++ AL  ++       PLL+  AK  +   L ++ D+A   +
Sbjct: 146 GRRSHERVPVEVCGALTPVLTALPGKL------APLLKPLAKDAEEVLLLAEGDKAAFAV 199

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
                +     E A     AL      +        +   L +  +     +     +Y 
Sbjct: 200 NLSGPVTARHLEAAEAAVRALRLEGAVLTP---KEGSARLLGKPALRSYSPLRPEVPLY- 255

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIA 240
              ++F Q +A  NV ++   +      + D +LELY GNGNF+  LA     VL VE +
Sbjct: 256 LRPDAFAQAHAEANVGLVTSAVYELGARESDTVLELYSGNGNFTFPLAGTAASVLGVESS 315

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              VE A+ +     V NV+ ++  +++    +  E+             RF     DPP
Sbjct: 316 PVGVELAQRSAHEGGVTNVRFIQGDARKVCDGLVAEQ------------RRFDVCLADPP 363

Query: 301 RSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
           R+G       M       ++Y++C+P SL RD + L +  +    L + D FP T H+E 
Sbjct: 364 RAGAPGLAKWMTALGVRRVVYVACDPASLARDAAGLVAAGYKPLALQVVDMFPQTHHVEA 423

Query: 359 GVLLVR 364
            +   R
Sbjct: 424 VMSFER 429


>gi|165975769|ref|YP_001651362.1| 23S rRNA 5-methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165875870|gb|ABY68918.1| 23S rRNA (Uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 442

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/358 (21%), Positives = 136/358 (37%), Gaps = 28/358 (7%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Q   K   L Q +   Q   +    +       YR RA+  I    + L      Q + +
Sbjct: 107 QREAKQRALFQRLQKLQSQPIDFQPMIVGNDKSYRRRAKLSIALQNNQLAIGFRMQNSNQ 166

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            + ++        ++ L I+ + ++      +  L  I+ +  Q+D  I  LI  R +  
Sbjct: 167 IIPLEQCGVLVEPLSQL-IKPLQSLFSTWQNKKSLGHIELV--QADDTITMLI--RNVGQ 221

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
              + +  L+         + ++   N            E        +        F Q
Sbjct: 222 FHPQDSRNLQQFAERHSLSLYVMTAENDITHLSG-----EAPYYQIHGVKLGFSIRDFIQ 276

Query: 190 PNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            N  +N  M++  L       Q  +L+L+CG GNF+L +A+    V+ VE  +P V  A+
Sbjct: 277 VNGDLNEKMVDKALEWLDLSAQDRVLDLFCGMGNFTLPIAKQAGFVVGVEGVEPMVAQAK 336

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   + + NV   + +  E               D    S  F  + +DP R+G     
Sbjct: 337 QNRDTSGLKNVAFYQTNLDE------------PFADKPWASEPFNKVLLDPARNGAFFCL 384

Query: 309 VGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +    P  I+Y+SCNP +L RD   L    + +++ A+ D FP+T H+E   L  +
Sbjct: 385 DHLAALNPGTIVYVSCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESISLFTK 442


>gi|168236826|ref|ZP_02661884.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194734709|ref|YP_002113975.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|194710211|gb|ACF89432.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197290210|gb|EDY29567.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 375

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 127/385 (32%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLTGLPVEQWCASIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+ + LFD FP+T H E   LL R
Sbjct: 350 RIQSVQLFDMFPHTAHYEVLTLLCR 374


>gi|294668410|ref|ZP_06733513.1| hypothetical protein NEIELOOT_00328 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309728|gb|EFE50971.1| hypothetical protein NEIELOOT_00328 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 445

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 134/371 (36%), Gaps = 24/371 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             ++   ++  Q++ K   + +        +     +     P HYR R    +  D   
Sbjct: 91  GCSMQHIEFSAQVSFKQRVVEEQCARLGKISPDQILAPIYGLPWHYRERGRLGVQVDEQG 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
              I F  ++K+  RI      ++L   L   +             L  I++  ++  + 
Sbjct: 151 RLKIGF--RSKKSNRIVALKQCAVLPQHLSAALPKLHMGLQSFSGNLEGIEFAVAE-GKT 207

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
            + LI  R   +   +C   L +                +  +  + D +  +L      
Sbjct: 208 ALCLIVLRRPSEKEMKCLQALVETFGEAWLWSWRSKNGMRQALRPEEDGLIYKLPDFNLK 267

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           + +      FTQ NA +N  M++  +   +   G+ + +L+CG GNF+L +AR   +VL 
Sbjct: 268 MSFEV--GGFTQVNAKLNNLMVKRAMDLLQPSPGERIADLFCGLGNFTLPIARSGAQVLG 325

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     V  A+ N  ANH                  R    F               + 
Sbjct: 326 VEGLPDLVNRAKQNAVANHCQG-----------YVDFRVADLFKVNPSAWDDWCNVDKVL 374

Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           +DPPR+G       + QA     I+Y+SCNP +  RD ++L    +    L + + F  T
Sbjct: 375 LDPPRTGAHAVIEMLTQARRLQRIVYVSCNPATFVRDAALLVGKGYRFRLLGVMNLFSQT 434

Query: 354 RHMECGVLLVR 364
            H+E      R
Sbjct: 435 AHIESIGCFDR 445


>gi|168230788|ref|ZP_02655846.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471664|ref|ZP_03077648.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458028|gb|EDX46867.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205334770|gb|EDZ21534.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 375

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPTGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|302821947|ref|XP_002992634.1| hypothetical protein SELMODRAFT_448840 [Selaginella moellendorffii]
 gi|300139598|gb|EFJ06336.1| hypothetical protein SELMODRAFT_448840 [Selaginella moellendorffii]
          Length = 636

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 144/480 (30%), Gaps = 120/480 (25%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF----------QVPNLQ-----------------IFR 37
           L    YE+QL EK D +  ++  F            P  +                 I  
Sbjct: 157 LASQSYEEQLREKRDGVATVLRKFVRHTRKCCVHGTPVPEWLTPGKEKGGMACDFEGIIS 216

Query: 38  SEP-IHYRMRAEFHIWHDGDD-----LYHIMFDQQT---------KERMRIDYFMPGSL- 81
           S     YR + EF I    D          MF +           +    I  F  G+L 
Sbjct: 217 SPVVEGYRNKCEFSIGFSADGESVVGFQMGMFRKGITTIGNPRNCRNVSDIAKFYAGALG 276

Query: 82  -LINALMIEMMATIRLEPLLRAKLFQI--DYLTSQSDQAIVTLIY-------HRLLDDAW 131
             I     ++          R    +      T Q +  +V  +          +  DA 
Sbjct: 277 SFIRTSEFQVWNKENNSGFWRMLTVREGRHPRTCQEEVPMVAEVMLVVQVSPSGIASDAK 336

Query: 132 RECAIRLRDALHARKYQ-----------------IQLIGRANKTKICL---DRDYVDERL 171
            +   R+   L +  +                  +     A+   I L     +   + +
Sbjct: 337 TKEYERMARELSSAAFSASPPVTLTALLVQEHVGVSNAAPADAPLISLAIPGTEVSVQYI 396

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH 230
                 L +R    +F Q N+     +              LL ++ CG G   L LAR 
Sbjct: 397 HDYIGDLQFRISPTAFFQVNSFAAEKLYALAGEWAGLGPNTLLFDICCGTGTIGLTLARK 456

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF-------NRLK 283
              V+ +EI   +V  A  N   N+++N + V   +++    +  E E        +   
Sbjct: 457 VGMVVGIEINADAVTDALTNAKLNNISNCRFVCAKAEDVVNKLLNEYEVLPEESSEDNAM 516

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILS---- 336
           D D   +    + VDPPRSGL       ++ +     ++Y+SCNPD+L  +   L     
Sbjct: 517 DTDKKRFSNVVVIVDPPRSGLHPTVTKALRVHSRLKRLVYVSCNPDTLIANSIELCAPSS 576

Query: 337 --------------------------------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                                                 +    D FP+T H E  +LL R
Sbjct: 577 TADKQKNGRGMNIKGMSSMGYARQRMKNMPNSEPFKPVKAVAVDLFPHTHHCEMVMLLQR 636


>gi|168819955|ref|ZP_02831955.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205343011|gb|EDZ29775.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320085157|emb|CBY94944.1| putative enzyme [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 375

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPTGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  I   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTIASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|51595706|ref|YP_069897.1| 23S rRNA methyluridine methyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186894780|ref|YP_001871892.1| 23S rRNA methyluridine methyltransferase [Yersinia
           pseudotuberculosis PB1/+]
 gi|116256324|sp|Q66CN7|RUMB_YERPS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725416|sp|B2K9X0|RUMB_YERPB RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|51588988|emb|CAH20606.1| putative RNA methyltransferase [Yersinia pseudotuberculosis IP
           32953]
 gi|186697806|gb|ACC88435.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Yersinia
           pseudotuberculosis PB1/+]
          Length = 376

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/381 (20%), Positives = 136/381 (35%), Gaps = 41/381 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLY 59
           S   L   Y QQLA+K   L  ++    V      +F      +R +A+  +    +   
Sbjct: 13  SCQWLDKPYPQQLADKQHHLESLLAGHAVTQWLAPVF-GRESTFRNKAKMVVSGSVERPL 71

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDY 109
             M  +     +      + P    +  ++   +A   L P         L+  L     
Sbjct: 72  LGMLHRDGTPVDLCACPLYPPSFEPVFTVLKTFIARAGLTPYNVARKRGELKFLLLTEST 131

Query: 110 LTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDR 164
              +     V     +L  L  A      +L   L      IQ +  A    + +I L  
Sbjct: 132 YNGELMLRFVLRSETKLAQLIAALPWLQQQLPQ-LAVISANIQPVHMAILEGEREIPLTE 190

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
               + L      +       SF Q N  +   +        +  +   + +L+CG G F
Sbjct: 191 ---QQALPERFNQVPLYIRPQSFFQTNPPVAASLYATARQWVQEHEVHSMWDLFCGVGGF 247

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A    ++  +EI+  ++  AR +     + NV    + S  F  A           
Sbjct: 248 GLHCAGPETQLTGIEISAEAIACARQSAEQLGLKNVSFAALDSTRFATA----------- 296

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                +   + + V+PPR G+       +   A   ILY SCN +++ +D+S+L   + I
Sbjct: 297 ----EAQIPELVLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMAKDISLL-AGYHI 351

Query: 342 ERLALFDQFPYTRHMECGVLL 362
           ER+ LFD FP+T H E   LL
Sbjct: 352 ERVQLFDMFPHTSHYEVLTLL 372


>gi|56414028|ref|YP_151103.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362951|ref|YP_002142588.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|81360323|sp|Q5PGN2|RUMB_SALPA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|226725414|sp|B5BBV5|RUMB_SALPK RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|56128285|gb|AAV77791.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094428|emb|CAR59944.1| hypothetical RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 375

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPTGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|238757958|ref|ZP_04619140.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia aldovae ATCC
           35236]
 gi|238703943|gb|EEP96478.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Yersinia aldovae ATCC
           35236]
          Length = 374

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 80/381 (20%), Positives = 138/381 (36%), Gaps = 39/381 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQLA+K   L  ++    V   L         +R +A+  +    +    
Sbjct: 13  SCQWLEKPYPQQLADKQHHLETLLAGHTVAQWLTPVFGRESAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M  +     +      +     ++ A++   +A   L P         L+  L      
Sbjct: 73  GMLHRDGTAVDLCACPLYPASFTVVFAVLKTFIARAGLTPYNVARKRGELKYLLLTESTY 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
             +     V     +L  L  A      +L   L      IQ +  A    + +I L + 
Sbjct: 133 RGELMLRFVLRSETKLAQLQAALPWLQQQLPQ-LAVISANIQPVHMAILEGEQEIPLTQ- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  I   +        + +    + +L+CG G F 
Sbjct: 191 --QQALPEIFNQVPLFIRPQSFFQTNPQIAASLYATARQWVRELNISSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EI+  ++  AR +     + NV    + S  F  +            
Sbjct: 249 LHCATAQTQLTGIEISAQAIACARQSAVQLGLQNVSFAALDSTRFATS------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
               +   + + V+PPR G+       +   A  +ILY SCN +++ +D+S+L   + IE
Sbjct: 297 ---TAQVPQLVLVNPPRRGIGTELCDYLSNMAPEYILYSSCNAETMAKDISLLVD-YRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLV 363
           R+ LFD FP+T H E   LL 
Sbjct: 353 RVQLFDMFPHTAHYEVLSLLT 373


>gi|268590215|ref|ZP_06124436.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia rettgeri
           DSM 1131]
 gi|291314496|gb|EFE54949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia rettgeri
           DSM 1131]
          Length = 377

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 138/374 (36%), Gaps = 41/374 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           EQQ+ EK  +L+ ++ A      Q   + P   +R +A+  +    +     +      +
Sbjct: 22  EQQITEKQSQLQALLPAIDTSLFQPPVTGPQTAFRNKAKMVVSGSVEKPILGIIGHDG-Q 80

Query: 70  RMRIDYFMP---------GSLL--INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
            + +               SL+  I    +      R    L+  L      T Q     
Sbjct: 81  GVDLTDCPLYPAEFSDVFASLIPFIARAGLTPYNIERKRGELKYILLTQSRHTGQFMLRF 140

Query: 119 VTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTV 173
           V     +L  L  A      +L   L      +Q +  A    + +I L +   ++ L  
Sbjct: 141 VLRSDKKLEQLKKALPWLQEQLPQ-LTVITANMQPVHMAILEGEQEIFLTK---EQTLRE 196

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFD 232
               +       SF Q N  +   + +      K +    L +L+CG G F L  A    
Sbjct: 197 EFNQVPLFIRPQSFFQTNPVVAAKLYQTAREWVKALDIHSLWDLFCGVGGFGLHCAEKDT 256

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            +  +EI+ P++ +A+ +     + +V+   + S  F  A               +    
Sbjct: 257 HLTGIEISAPAIASAQQSADELGLKHVEFKALDSTRFATA---------------NQDIP 301

Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
           + I V+PPR G+       +      +ILY SCN  ++ +DL +L   + + ++ LFD F
Sbjct: 302 QLILVNPPRRGIGKELCDFLSHVQPEYILYSSCNAQTMAQDLQLL-AGYQVCKVQLFDLF 360

Query: 351 PYTRHMECGVLLVR 364
           P+T H E   LL R
Sbjct: 361 PHTAHFEVLTLLKR 374


>gi|34222389|ref|NP_892029.2| tRNA (uracil-5-)-methyltransferase homolog A [Homo sapiens]
 gi|51173878|ref|NP_073564.3| tRNA (uracil-5-)-methyltransferase homolog A [Homo sapiens]
 gi|51316479|sp|Q8IZ69|TRM2A_HUMAN RecName: Full=tRNA (uracil-5-)-methyltransferase homolog A;
           AltName: Full=HpaII tiny fragments locus 9c protein
 gi|33869861|gb|AAH17184.2| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo
           sapiens]
 gi|39644624|gb|AAH13352.2| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo
           sapiens]
 gi|47678239|emb|CAG30240.1| Em:AC006547.2 [Homo sapiens]
 gi|80477429|gb|AAI08252.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Homo
           sapiens]
 gi|109451268|emb|CAK54495.1| Em:AC006547.C22.2 [synthetic construct]
 gi|109451846|emb|CAK54794.1| Em:AC006547.C22.2 [synthetic construct]
 gi|119623400|gb|EAX02995.1| HpaII tiny fragments locus 9C, isoform CRA_a [Homo sapiens]
 gi|261857608|dbj|BAI45326.1| TRM2 tRNA methyltransferase 2 homolog A [synthetic construct]
          Length = 625

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 131/421 (31%), Gaps = 76/421 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 179 PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQTE 238

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 239 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 298

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDALHA--- 144
                           Q+   TS+  QA+    +H  +L  +   E    L     A   
Sbjct: 299 TPYSAYDPETYTGHWKQLTVRTSRRHQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPG 358

Query: 145 -RKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                  L       +       + L+    D  +      L +R   ++F Q N     
Sbjct: 359 RASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +    +   G  +L++ CG G   L LAR   RV+ VE+   +VE AR N   N 
Sbjct: 419 VLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 478

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV+     +++    +        L              +DPPR+GL    +  ++  
Sbjct: 479 LSNVEFHCGRAEDLVPTLVSRLASQHL-----------VAILDPPRAGLHSKVILAIRRA 527

Query: 316 P---HILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
                +LY+SCNP +   +   L                +    D FP T H E  +L  
Sbjct: 528 KNLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFE 587

Query: 364 R 364
           R
Sbjct: 588 R 588


>gi|313500179|gb|ADR61545.1| RumA [Pseudomonas putida BIRD-1]
          Length = 452

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 142/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
              L    ++ QLA K   L + +        +            YR RA   +  D   
Sbjct: 101 GCNLQHLPHDAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRARVAVRWDVKA 160

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                 +  + +++ + ID        + +++  +   +R     +A L  ++  +  ++
Sbjct: 161 RQLEVGLRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKPQA-LGHVELFSGTAE 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +V     R +     E   RL+        Q+ L G      +            +A 
Sbjct: 220 AVLV-----RHVAPLPAEDQARLQAFCEQANAQLWLQGEGEPAPV---DPAAQLGFALAP 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L        F Q NA +N  M+E  LA       + +L+L+CG GNF+L LAR    V
Sbjct: 272 WQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREV 331

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  V+ A  N   N+V+N +  +    +             L      +  F  
Sbjct: 332 VAVEGVQAMVDRAAANARNNNVHNARFFQADLSQ------------PLAGTGWAAEGFSA 379

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP 
Sbjct: 380 VLLDPPRDGAFEVVQGIARLKASRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQ 439

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 440 TAHVEAMALFE 450


>gi|251789980|ref|YP_003004701.1| 23S rRNA methyluridine methyltransferase [Dickeya zeae Ech1591]
 gi|247538601|gb|ACT07222.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Dickeya zeae Ech1591]
          Length = 376

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 135/384 (35%), Gaps = 41/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQ+  K   L  ++ A  V   L    S    +R +A+  +    +    
Sbjct: 13  SCQWLETAYPQQVTNKQQHLLGLLAAHPVQRWLTPVTSAENAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M  +     +      +      +  ++   +A   L P         L+  L     L
Sbjct: 73  GMLHRDGSPVDLCDCPLYPDSFAPVFRVLKTFIARAGLTPYNVARRRGELKYLLLTQSTL 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA----NKTKICLDR 164
           +       V     +L  L  A      +L   L      IQ + +A           + 
Sbjct: 133 SGHFMLRFVLRSDAKLAQLRAALPWLQQQLPQ-LTVISANIQPVHQAILEGELEMPLTEA 191

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
             ++ER       +       SF Q N  +   + +        +    L +L+CG G F
Sbjct: 192 QALEERF----NQVPLYIRPQSFFQTNPQVAAALYDTARQWVSALPVRSLWDLFCGVGGF 247

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A     +  +EI+  ++  AR + A   + NV    + S  F              
Sbjct: 248 GLHCAGADTPLTGIEISPEAIACARRSAAQLGLTNVSFAALDSTRFAVG----------- 296

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                +     + V+PPR G+       +   A P++LY SCN +S+ +D++ L   + I
Sbjct: 297 ----EAQTPDLVIVNPPRRGIGAELCDYLSHMAPPYLLYSSCNAESMAKDITRLPA-YQI 351

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
            ++ LFD FP+T H E   LL R+
Sbjct: 352 RQVQLFDMFPHTAHYEVLTLLQRR 375


>gi|240103925|ref|YP_002960234.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
 gi|239911479|gb|ACS34370.1| 23S rRNA (uracil-5-)-methyltransferase (rumA) [Thermococcus
           gammatolerans EJ3]
          Length = 421

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 132/379 (34%), Gaps = 47/379 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLY 59
            G L    +Y+ QL  K     ++       + QI  S     +R  + F +  +G  L 
Sbjct: 74  GGCLWQGLKYKAQLKLKA----ELFERITGISAQIKGSPKIWGFRNVSNFIVTSNGIGLK 129

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-----------LRAKLFQID 108
                      + +      S   +  +  +   +    L           +     +  
Sbjct: 130 EYGNPLG---VVNLSECPVFSKRTSEYLSTLRDFLAETGLRPWSPKRKTGDVHYLQIREG 186

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
             T +    ++T +                 D+L+             +        ++ 
Sbjct: 187 KFTGEVMVNLITHVEPSKETSEAFGDYFFFADSLYWSLKTDWRDDPRGEPLHVAGSQFIR 246

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           ER+      ++Y    NSF Q N+     +L  V   T G    +L+LY G G F + LA
Sbjct: 247 ERI----EDVVYLIHPNSFFQTNSYALELLLRAVENFTDGE--RVLDLYSGVGTFGVYLA 300

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           +    V  VE+   +VE A  N   N V N +     ++E                    
Sbjct: 301 KRGFTVEGVEVNPFAVEMANRNTEINGV-NAQFRVGRAEET------------------P 341

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLS-ILSTTHTIERLAL 346
              + T+ VDPPR GL +    +V+     ++Y+SCNP +   D    L   + IE   L
Sbjct: 342 IGDYDTVIVDPPRKGLRETAELLVKGGIERVVYVSCNPKAFRLDYKNHLRKAYRIEDAVL 401

Query: 347 FDQFPYTRHMECGVLLVRK 365
            D FP+T H+E  V LVR+
Sbjct: 402 VDMFPHTPHVEAVVELVRR 420


>gi|152968262|ref|YP_001364046.1| 23S rRNA methyluridine methyltransferase [Kineococcus radiotolerans
           SRS30216]
 gi|151362779|gb|ABS05782.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Kineococcus
           radiotolerans SRS30216]
          Length = 372

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 88/381 (23%), Positives = 150/381 (39%), Gaps = 40/381 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S TL+   Y +Q+ +K +R R+++ A   +  L   RS    YR +A+  +    +    
Sbjct: 13  SCTLIELPYPRQVRDKEERCRELLAAHEGLRWLPSVRSPEAGYRNKAKMVVGGTVERPTF 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------TIRLEPLLRAKLFQIDYLTSQ 113
            + D      + +      +  I  L+  +              P  R +L  +    S 
Sbjct: 73  GILDAAG-RGVDLSECPVCAPGILDLLPVLARFTTRAGLVPYDVPRRRGELKNVLITESP 131

Query: 114 SDQAIV--TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVD 168
           S + +V   L     L    R     LR+A       + L+    + K  ++ D    + 
Sbjct: 132 SGELMVRFVLRSQDRLPALRRHLPQLLREAPRLAVVSVNLLP---EHKAVVEGDVEIALT 188

Query: 169 ER--LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL 225
           ER  L +    +       SF Q N  +   +   V      +    L +LYCG G F+L
Sbjct: 189 ERTTLRMPMGGVDLDLRPQSFFQTNTVVARELYAQVARWVDEVAPASLWDLYCGVGGFAL 248

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A    RV  +E++  +VE+AR   AA  + +V+     +  F        E       
Sbjct: 249 HCAAPGRRVTGIEVSAEAVESARA--AAAGLPDVEFAAGDATRFALEAPEAPEL------ 300

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR G+     G ++     H++Y SCNP +L +DL+ + +     R
Sbjct: 301 ---------VVVNPPRRGIGPELSGWLERSDVAHVVYSSCNPVTLAKDLAAMPSL-RPVR 350

Query: 344 LALFDQFPYTRHMECGVLLVR 364
             + D FP+T+H+E  VLL R
Sbjct: 351 ARVLDMFPHTQHVEVAVLLSR 371


>gi|262190756|ref|ZP_06048984.1| RNA methyltransferase TrmA family [Vibrio cholerae CT 5369-93]
 gi|262033371|gb|EEY51881.1| RNA methyltransferase TrmA family [Vibrio cholerae CT 5369-93]
          Length = 375

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 144/384 (37%), Gaps = 41/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y QQ+  K  +LR+++     V  L    S    +R +A+  +         
Sbjct: 13  SCHLCAQPYSQQVENKDQQLRELIAPATDVQWLPPVTSSDTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLLRAKLFQIDY 109
            + D Q  + + +         +  L            I     ++ +  L+  L     
Sbjct: 73  GIEDAQG-QPLSLVTCPLYPQPMQELLAYLENCIRIAGIPPYNKLKKKGELKFILLTRSE 131

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECA--IRLRDALHARKYQIQLIGRAN---KTKICLDR 164
            + Q     V    H +L+   R           +      IQ +  A    + +I L  
Sbjct: 132 NSGQFMLRFVAR-SHAVLERIERNLPMLTAAFPMIEVISVNIQPVHMARLEGEEEIFLTE 190

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
               + L      +       SF Q N  +   +     A  + I    + +L+CG G F
Sbjct: 191 ---TQSLLEQFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGF 247

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E     
Sbjct: 248 ALHCAAPDTAVTGIEIEPEAIASAQRSAQMMEIDNLSFAALDSAKFSQSQMSAPEL---- 303

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                      + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + +
Sbjct: 304 -----------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVKDIAELAS-YQM 351

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
            R+  FD FP+T H E   LLVRK
Sbjct: 352 IRVQWFDMFPHTDHAEVLTLLVRK 375


>gi|149758689|ref|XP_001488208.1| PREDICTED: similar to HpaII tiny fragments locus 9C [Equus
           caballus]
          Length = 633

 Score =  196 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 130/421 (30%), Gaps = 76/421 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 187 PYAEQLERKRLECEQVLQKLAKEIGSTNRALLPWLFSQRHKHNKACCPLEGVRPSPQQTE 246

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I      ++         
Sbjct: 247 YRNKCEFLIGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKRVVKAFQEFIRS 306

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL---------LDDAWRECAIRLRD 140
                           Q+   TS+  QA+    +H           L  +     +    
Sbjct: 307 TPYSAYDPETYSGHWKQLTVRTSRRGQAMAIAYFHPQKLSPEELAGLKASLAHHFMAGPG 366

Query: 141 ALHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                     +     KT     + L+    D  +      L +R   ++F Q N     
Sbjct: 367 KASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 426

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +    +   G  +L++ CG G   L LAR   RV+ +E+ + +VE AR N   N 
Sbjct: 427 VLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALARKVKRVVGIELCQEAVEDARVNARDNE 486

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV+     +++    +       +L              +DPPR+GL    +  V+  
Sbjct: 487 LSNVEFHCGRAEDLVPTLVSRLASQQL-----------VAVLDPPRAGLHSKVILAVRKA 535

Query: 316 ---PHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
                +LY+SCNP +   +   L                +    D FP T H E  +L  
Sbjct: 536 ENLKRLLYVSCNPRAAMSNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTSHCEMLILFE 595

Query: 364 R 364
           R
Sbjct: 596 R 596


>gi|293188991|ref|ZP_06607724.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           odontolyticus F0309]
 gi|292822093|gb|EFF81019.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           odontolyticus F0309]
          Length = 387

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 83/390 (21%), Positives = 139/390 (35%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
           S +LL   YE+QLAEKVD +   +       ++  L    S    +R   +  +      
Sbjct: 13  SCSLLPQPYERQLAEKVDAVVAALAHVPGTQEIRWLSPASSPEEGFRTSVKLVVGGSRRR 72

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYL 110
               +     +  + +         IN     +   IR         P  R +L  I   
Sbjct: 73  PTLGLLGPD-RRGVDLPGCPIQHPAINRATPGLKRFIRALDLTPYDVPTKRGELKNILVT 131

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--- 167
               ++ ++  +       +    A+ L   L    + +          I    D +   
Sbjct: 132 VGAEERLMIRFVLRTRERVSDIRSALPLLRDLVPSAHVVTANIHPTHEAIVEGPDEIILT 191

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGN 220
               L ++   L       SF Q NA +   + E           D      L +LYCG 
Sbjct: 192 RTRTLPLSVEGL--ELGPRSFAQTNAHVASTLYEQASVWASRPFTDGRLPESLWDLYCGV 249

Query: 221 GNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRER 277
           G F+L  AR  F RV  VE++  ++ +A        ++      +   +  + +A   E 
Sbjct: 250 GGFALACARSGFPRVTGVEVSPGAISSAISAARHAGLSRGAATFIADDATAWARAQSPED 309

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                            I V+PPR G+       +     P ++Y SCNP SL RDL ++
Sbjct: 310 -------------VPDVIVVNPPRRGIGADLAAYLNGCAAPRVIYSSCNPASLARDLQLM 356

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +   +E   +FD FP+T H+E  +LL R+
Sbjct: 357 PSLRPVEG-RIFDMFPHTTHVEVALLLERE 385


>gi|76799178|ref|ZP_00781359.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           18RS21]
 gi|76585471|gb|EAO62048.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
           18RS21]
          Length = 252

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/262 (23%), Positives = 102/262 (38%), Gaps = 28/262 (10%)

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDY 166
           S +  +  I  + LD  + +  I L       K     I  +         T++   ++ 
Sbjct: 8   SGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEVIWGQES 65

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSL 225
           ++E +   G +L       +F Q N      +  E V A       DL++ YCG G   L
Sbjct: 66  INEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCGVGTIGL 121

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  ++I   +++ A+ N       N       +++       E         
Sbjct: 122 AFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHYEAGKAEDIIPRWYSE--------- 172

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIER 343
               +R   + VDPPR+GLDD  +  +   P   ++Y+SCN  +L RDL  L+  + +  
Sbjct: 173 ---GFRANALIVDPPRTGLDDKLLNTILKMPPEKMVYVSCNTSTLARDLVTLTKVYHVHY 229

Query: 344 LALFDQFPYTRHMECGVLLVRK 365
           +   D FP+T   E  V L RK
Sbjct: 230 IQSVDMFPHTARTEAVVKLQRK 251


>gi|126324739|ref|XP_001376871.1| PREDICTED: similar to HpaII tiny fragments locus 9C [Monodelphis
           domestica]
          Length = 663

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 137/431 (31%), Gaps = 88/431 (20%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEP 40
           L    YE+QL  K     Q++                               L+  ++ P
Sbjct: 186 LWTLPYEEQLERKQQECEQVLQKLTKEIGNNNRTLLPWLFVQKQKFNKLCCPLEGVKASP 245

Query: 41  IH--YRMRAEFHIWHDGD------DLYHIMFDQQT---KERMRIDYFMPGSLLINALMIE 89
           +   YR + EF I                 +   +    E     +   G+  +     E
Sbjct: 246 LQTEYRNKCEFLIGVGVGCQDKTVGCRLGKYKGGSCAVAEPFDTVHIPAGTKRVVRAFQE 305

Query: 90  MMAT----IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
            + +    +           Q+   TS+S + +  + +H       +E    L+ +L   
Sbjct: 306 YIRSTPYSVYSPETYEGHWRQLTVRTSRSGETMAIVYFHPQKLS--QEELAGLKASLGQH 363

Query: 146 --------KYQIQLIGRANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENS 186
                        L       +                 Y+ E L      L +R   ++
Sbjct: 364 FTAGPGQPSGVTSLYFVEEGQRKSPNREDLPLEHVAGEKYIHEELL----GLKFRISPHA 419

Query: 187 FTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N      +   +        +  +L++ CG G   L LA+   RV+ +E+ + +VE
Sbjct: 420 FFQVNTPAAEVLYTTIRDWAQLDGEITVLDVCCGTGTIGLSLAQTVKRVIGIELCQEAVE 479

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N   N ++N++     +++   ++       RL           T  VDPPR+GL 
Sbjct: 480 DARVNAKMNALDNIEFHCGKAEDLVPSLMSSLASQRL-----------TAIVDPPRAGLH 528

Query: 306 DATVGMVQAY---PHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYT 353
              +  ++       ++Y+SCNP +   +   L                R    D FP T
Sbjct: 529 SKVILAIRRAEHLKKLIYVSCNPRAAMSNFVDLCRAPSNRVKGSPFRPVRAVAVDLFPQT 588

Query: 354 RHMECGVLLVR 364
            H E  +L  R
Sbjct: 589 LHCEMLILFER 599


>gi|328955342|ref|YP_004372675.1| 23S rRNA m(5)U-1939 methyltransferase [Coriobacterium glomerans
           PW2]
 gi|328455666|gb|AEB06860.1| 23S rRNA m(5)U-1939 methyltransferase [Coriobacterium glomerans
           PW2]
          Length = 438

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 129/375 (34%), Gaps = 42/375 (11%)

Query: 11  EQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEP--IHYRMRAEFHIWHDGDDLYHI 61
           ++QLA K + L   +              ++  RS P    YR + E     +G  +   
Sbjct: 83  QEQLAAKQENLVSALERIGRFSSERVRELVKPIRSTPQAWGYRNKIEMTPIIEGGRMRLG 142

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAIVT 120
           +      + + +           +    +   +      R   L ++    S+  +A+  
Sbjct: 143 LHGCDPTQIVSVKTCPLFEKSFASAPRSIAGALSYLGNSRDLSLERVGIRASRRTRALEI 202

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK------TKICLDRDYVDERLTVA 174
            ++         +    L DA+ A      +     +       +    R    ERL   
Sbjct: 203 ALWTPTGGFPRAQTVRVLSDAVEATGVVRVMCKGERRARRVSAQETLHGRGSWTERLGPQ 262

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDR 233
             +        SF Q N      +++  L A      ++ ++LY G G F+L LA     
Sbjct: 263 ELS----VSAPSFFQVNTIGAEILIDLALTALSPSSDEIAIDLYSGAGTFTLPLASRCAG 318

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V AVE   P+V   R N+     +NV+++   +                 D D       
Sbjct: 319 VAAVESFGPAVRDLRRNLERARADNVEVIGGDA------------VREFPDQDA-----D 361

Query: 294 TIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS--TTHTIERLALFDQ 349
            + VDPPR+GL    + ++   +   + Y+SC+P +L RDL+            +   D 
Sbjct: 362 VLLVDPPRAGLAAEAITLIGQTSARDVAYVSCDPATLARDLARFERDGVFRPVAVTAVDL 421

Query: 350 FPYTRHMECGVLLVR 364
           FP T H E    L R
Sbjct: 422 FPQTFHCEAVAHLSR 436


>gi|283784622|ref|YP_003364487.1| 23S rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium
           ICC168]
 gi|282948076|emb|CBG87641.1| 23S rRNA (uracil-5-)-methyltransferase [Citrobacter rodentium
           ICC168]
          Length = 375

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 137/372 (36%), Gaps = 39/372 (10%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH-YRMRAEFHIWHDGDDLYHIMFDQQT--K 68
           +QL+ K+  L  ++  F V       S P   +R +A+  +    +     M  +    +
Sbjct: 23  EQLSAKMADLHHLLAGFPVAEWCAPVSGPERAFRNKAKMVVSGSVEKPLLGMLHRDGTPE 82

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYLTSQSDQAIVT 120
           +      +      + A +   +A   L P         L+  L     L        V 
Sbjct: 83  DLCDCPLYPASFAPVFAALKPFIARAGLTPYNVARRRGELKYLLLTESQLDGGMMLRFVL 142

Query: 121 LIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVAG 175
              ++L  L  A      +L   L      +Q +  A    + +I L      + L    
Sbjct: 143 RSENKLAQLRAALPWLQAQLPQ-LKVISVNLQPVHMAIMEGEREIFLTE---QQALAERF 198

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRV 234
             +       SF Q N  +   +        + +    + +L+CG G F L  A    R+
Sbjct: 199 NNVPLWIRPQSFFQTNPTVASRLYATARDWVRQLPVTHMWDLFCGVGGFGLHCATPEMRL 258

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             +EI+  ++  A  + A   + N++   + S  F  A                    + 
Sbjct: 259 TGIEISPEAIACATQSAAELGLTNLQFQALDSTRFATA---------------QESVPQL 303

Query: 295 IFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+  A    + +  P  I+Y SCN  ++ +D++ L   + IER+ LFD FP+
Sbjct: 304 VLVNPPRRGIGKALCDYLGKMAPQFIIYSSCNAQTMAKDIASL-AGYRIERVQLFDMFPH 362

Query: 353 TRHMECGVLLVR 364
           T H E   LL+R
Sbjct: 363 TAHYEVLTLLIR 374


>gi|319427485|gb|ADV55559.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella
           putrefaciens 200]
          Length = 389

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 136/377 (36%), Gaps = 44/377 (11%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH----YRMRAEFHIWHDGDDLYHIMFDQQT 67
           QQL  K   L+Q++  F  P+  IF          +R +A+  +          +     
Sbjct: 32  QQLMAKSLELQQLLKPFVAPSAAIFYPPVTGEATAFRNKAKMVVLGAAHAPVLGIVSPSG 91

Query: 68  KERMRIDYFMPGSLL----------INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +     D  +  S +          +    I      + +  L+  L     +  +    
Sbjct: 92  EAVSLCDCLLYPSDMQKLLHRLTQFVQQAGIPPYRVDKAKGELKFILLTRSQVRGEYLLR 151

Query: 118 IVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRD---YVDE--R 170
            V L  H  ++   R     L +   ++     IQ I  A      L+ D   ++ E  R
Sbjct: 152 FV-LRSHNSIERIERALPTLLAEYPQINVVSVNIQPIHMA-----ILEGDEEIFLTENTR 205

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L      +       SF Q N  +   + +             L +L+CG G F L  A 
Sbjct: 206 LEERFNDVPLFIRPKSFFQTNPQVAAQLYQTAREWVAEFAPKSLWDLFCGVGGFGLHCAT 265

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               +  +EI   ++  A+ +     +  V+ + + S +F Q                  
Sbjct: 266 KDIALTGIEIEAEAISCAQMSANLMGLEKVQFMALDSTDFAQGKNAAD------------ 313

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
            +   I V+PPR G+ +A    +   A   ILY SCNP +L +DL  +   + + ++ LF
Sbjct: 314 -KPDLIIVNPPRRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHI-QGYHLTKVQLF 371

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H E   +LV+
Sbjct: 372 DLFPHTDHFEVLAMLVK 388


>gi|197265862|ref|ZP_03165936.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197244117|gb|EDY26737.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 375

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 127/385 (32%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ +     +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSATELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|332702740|ref|ZP_08422828.1| RNA methyltransferase, TrmA family [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552889|gb|EGJ49933.1| RNA methyltransferase, TrmA family [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 508

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 20/207 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCG 219
           R + D  L ++   L YR    +F Q N      +   V             ++ + YCG
Sbjct: 314 RAWGDPVLEMSLGGLRYRLSPQAFFQTNTAGAERLFGLVEEMAGLSDWPNGPEIFDCYCG 373

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L LAR    V   E+ + +V  A  N   N++ N   V          +RR    
Sbjct: 374 VGAMALRLARATGHVTGFELVEGAVRDATDNARLNNLTNCSFVAGD-------LRRTLAD 426

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
            +L        +   + +DPPR+G+       +   A   I+ +SC+P +  RD ++L  
Sbjct: 427 RKLP-------KPDVLVIDPPRAGMHPDVAARILDLAPERIVSVSCDPATFARDAALLLP 479

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            +T+ R+   D FP++ H+E   LL+R
Sbjct: 480 GYTLTRVVPVDLFPHSHHVETVALLIR 506


>gi|322616357|gb|EFY13266.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619607|gb|EFY16482.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622697|gb|EFY19542.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628609|gb|EFY25396.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631546|gb|EFY28302.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637073|gb|EFY33776.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641728|gb|EFY38364.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644479|gb|EFY41019.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650060|gb|EFY46477.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654147|gb|EFY50470.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658062|gb|EFY54329.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663536|gb|EFY59738.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322670272|gb|EFY66412.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671508|gb|EFY67630.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676864|gb|EFY72931.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682789|gb|EFY78808.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686468|gb|EFY82450.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323196078|gb|EFZ81241.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196776|gb|EFZ81920.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202945|gb|EFZ87979.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208985|gb|EFZ93922.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209696|gb|EFZ94623.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215178|gb|EFZ99923.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222381|gb|EGA06759.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227505|gb|EGA11665.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229856|gb|EGA13979.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233081|gb|EGA17177.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240816|gb|EGA24858.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243133|gb|EGA27153.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248675|gb|EGA32603.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251676|gb|EGA35543.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257336|gb|EGA41034.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261924|gb|EGA45490.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267940|gb|EGA51419.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271993|gb|EGA55408.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 375

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 75/384 (19%), Positives = 125/384 (32%), Gaps = 43/384 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLTGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA--NKTKICLD 163
                      V     +L  L  A      +L   L      IQ +  A     K    
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGEKEIYL 188

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGN 222
            D   + L      +       SF Q N  +   +          +    + +L+CG G 
Sbjct: 189 TD--QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVGG 246

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A          
Sbjct: 247 FGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA---------- 296

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHT 340
                       + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   + 
Sbjct: 297 -----QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-YR 350

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           I+R+ LFD FP+T H E   LL R
Sbjct: 351 IQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|50292305|ref|XP_448585.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527897|emb|CAG61548.1| unnamed protein product [Candida glabrata]
          Length = 585

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 152/389 (39%), Gaps = 46/389 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRA--EFHIWHDGD 56
            Y +QL  K   +      F          P +    + P    YR +    F + H   
Sbjct: 209 DYSEQLKIKKSTIANAYKHFAPLLLAESLVPEISDTVASPLQYGYRTKITPHFDMPHKVK 268

Query: 57  DLYH---IMFDQQTKERMRIDYFMPG-SLLINALMIEMMATIRLEPLLRAKLFQIDY-LT 111
            L     + F Q+ + + R +    G +  I  +    +AT  L   L  +  + +    
Sbjct: 269 QLEVRPPLGFGQKGRPKWRKETLEVGGTGPILDIEECALATDILNKGLSNERARFEKEFK 328

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-ICLDRDYVD-- 168
           +    A + L  + ++ D  +    +L +        I  I   ++T  + L +  V   
Sbjct: 329 NYKKGATILLRENTIILDPSKPTEEQLEEGSRDENGDISFIEVTDETTGVKLAKTCVTNT 388

Query: 169 -ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNF 223
            + +T       ++     F Q N  I   + ++V    +   GD    L++ YCG+G F
Sbjct: 389 RQIVTEYVDGYTFKFSAGEFFQNNNSILPLVTKYVRDNLQLGNGDKPRYLVDAYCGSGLF 448

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           S+  ++  D+V+ VEI+  SV  A  N   N V N K +   +++  +++    +     
Sbjct: 449 SICSSKGVDKVIGVEISADSVSFAERNAKNNGVENCKFIVGKAEKLFESIDTPAD----- 503

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL------ 335
                     ++ +DPPR G D+  +  + AY    I+YISCN  S  RD+         
Sbjct: 504 --------STSVILDPPRKGCDELFLKQLAAYNPARIVYISCNVHSQARDVQYFLKDTPE 555

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
              + +E +  FD FP T H+E   +L R
Sbjct: 556 GKNYRVESIRGFDFFPQTHHVESVCVLSR 584


>gi|204929928|ref|ZP_03220949.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204320922|gb|EDZ06123.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 375

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELRLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|118595122|ref|ZP_01552469.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium
           HTCC2181]
 gi|118440900|gb|EAV47527.1| 23S rRNA (uracil-5-)-methyltransferase [Methylophilales bacterium
           HTCC2181]
          Length = 441

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 138/375 (36%), Gaps = 30/375 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH----YRMRAEFHIWH--DG 55
             ++       QLA K     Q +            S        YR +A F + +    
Sbjct: 80  GCSMQHFDISSQLAHKQRAFEQTLQHVGKVFPDQVLSPVSGPTSEYRHKARFRVKYVEKK 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++ +     +D      L I++L +  M  +     +R ++ QI+Y ++Q  
Sbjct: 140 QKVLIGFNEKLSHFLTDMDSCKVIPLKISSL-LSPMQALFTSLSIRDQIPQIEYASNQER 198

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-NKTKICLDRDYVDERLTVA 174
             +V     R+L+         L+D    +  +     +     K  L            
Sbjct: 199 HILVL----RILEALSENDINLLKDFQEKKGIEFWTQTKGYESVKPLLSSMQKSIVYKNK 254

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233
              L +     SFTQ N  IN  ++  V+        +++ + +CG GNF+L +A +   
Sbjct: 255 EFNLSFEFKPTSFTQINPFINAVLIRRVMNFLNPKPTEVIFDFFCGLGNFTLPIASYGSN 314

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS-YRF 292
           V+  E  +  VE+A  N   N +           EF     +  +  ++ D  I S  R 
Sbjct: 315 VVGFESDEALVESANINAEKNKLQ-------KLAEF-----KRVDLFKVDDQAITSLGRA 362

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL--STTHTIERLALFD 348
               +DPPR G  +    + +      I Y+SCNP +L RD  +L     +   +  + +
Sbjct: 363 SKWLIDPPRDGALNLINSISEENKPNLICYVSCNPATLARDAHVLTNEKGYKFAKAGILN 422

Query: 349 QFPYTRHMECGVLLV 363
            FP+T H+E   L  
Sbjct: 423 MFPHTSHVESIALFE 437


>gi|154507954|ref|ZP_02043596.1| hypothetical protein ACTODO_00440 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797588|gb|EDN80008.1| hypothetical protein ACTODO_00440 [Actinomyces odontolyticus ATCC
           17982]
          Length = 385

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 138/389 (35%), Gaps = 43/389 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
           S +LL   YE+QLAEKVD +   +       ++  L    S    +R   +  +      
Sbjct: 13  SCSLLPQPYERQLAEKVDAVVAALAHVPGSQEIRWLSPASSPEEGFRTSVKLVVGGSRRR 72

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYL 110
               +     +  + +         IN     +   IR         P  R +L  I   
Sbjct: 73  PTLGILGPD-RRGVDLPGCPIQHPAINRATPGLKRFIRALDLTPYDVPTKRGELKNILVT 131

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV--- 167
               ++ ++  +       +    A+ L   L    + +          I    D +   
Sbjct: 132 VGAEERLMIRFVLRTRERVSDIRSALPLLRDLVPAAHVVTANIHPTHEAIVEGPDEIILT 191

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGN 220
               L ++   L       SF Q NA +   + E           D      L +LYCG 
Sbjct: 192 RTRTLPLSVEGL--ELGPRSFAQTNAHVASTLYEQASVWASRPFTDGRLPESLWDLYCGV 249

Query: 221 GNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRER 277
           G F+L  AR  F RV  VE++  ++ +A        ++      +   +  + +A   E 
Sbjct: 250 GGFALACARSGFPRVTGVEVSPGAISSAISAARHAGLSRGAATFIADDATAWARAQSPED 309

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL 335
                            I ++PPR G+       +     P ++Y SCNP SL +DL+ +
Sbjct: 310 -------------VPDVIVINPPRRGIGADLAAYLNECDAPRVIYSSCNPASLAKDLTSM 356

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
            T   +E   +FD FP+T H+E  +LL R
Sbjct: 357 PTLFPVEG-RVFDMFPHTPHVEAALLLER 384


>gi|319943746|ref|ZP_08018027.1| 23S rRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC
           51599]
 gi|319742979|gb|EFV95385.1| 23S rRNA (uracil-5-)-methyltransferase [Lautropia mirabilis ATCC
           51599]
          Length = 473

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 132/386 (34%), Gaps = 31/386 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIW--HDG 55
              L       Q+A K   L   +                     YR RA   +      
Sbjct: 94  GCNLQHADLRAQVAFKQRVLEDTLWHLGRVRPAQMLAPIEGPTWGYRFRARLAVRDVPSR 153

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS--Q 113
             +     ++++     +D        ++ L+  + A +     +R ++ QI+      Q
Sbjct: 154 GGVLIGFHEKKSSYVADLDECSVLPAQVSVLLPALKALVESL-SIRNRMPQIEVAVGDCQ 212

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--------DRD 165
                   +  R L     +   RL         +I        T   L           
Sbjct: 213 RPPRHPLALVFRTLLPLSGKDRNRLIAFGREHGAEIWQQPGGPDTARLLCDAEGRTDGTS 272

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFS 224
            +   L   G  + +      FTQ NAGIN  +L   +       +  +++L+CG GNF+
Sbjct: 273 ALAYELPEFGIRIPF--GPTDFTQVNAGINRQLLSRAVQMLDPRPEHRVVDLFCGLGNFT 330

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA    +V+ VE  K  VE  R N  AN    +        +F  A   E +    + 
Sbjct: 331 LPLATRARQVIGVEGVKALVERGRQNALANRHALLAPPGNDGVQFRVANLFEFDRAAWQA 390

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--ST 337
           +     R   + +DPPR G       +    P      ++Y+SCNP +L RDL ++    
Sbjct: 391 LG----RVDRLLIDPPRDGALAVARVLAALPPEQRPARMVYVSCNPATLARDLGLMVNEG 446

Query: 338 THTIERLALFDQFPYTRHMECGVLLV 363
              +    + + FP+T H+E   LL 
Sbjct: 447 KWRVRMAGVANMFPHTAHVESIALLE 472


>gi|297580019|ref|ZP_06941946.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535665|gb|EFH74499.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 377

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 150/383 (39%), Gaps = 37/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y +Q+  K  +LR+++     V  L    S  I +R +A+  +         
Sbjct: 13  SCHLCAQPYSEQVTNKDQQLRELIAPATDVQWLPPVTSADIAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQ 113
            + D Q +    +    +      + A +   +    + P  + K      F +   +  
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSEN 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDY 166
           S Q ++  +   H +L+   R     +     +      IQ +  A    + +I L    
Sbjct: 133 SGQFMLRFVARSHAVLERIERNLPTLIAAFPTIEVISVNIQPVHMARLEGEEEIFLTE-- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
             + L      +       SF Q N  +   +     A  + I    + +L+CG G F+L
Sbjct: 191 -TQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFAL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E       
Sbjct: 250 HCAAPNTAVTGIEIEPEAIASAQRSAQMMEIDNLSFAALDSAKFSQSQMSAPEL------ 303

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR GL       ++  A  HILY SCNP ++ +D++ LS+ + + R
Sbjct: 304 ---------VLVNPPRRGLGSELTAQLEALAPKHILYSSCNPQTMVKDIAELSS-YQMIR 353

Query: 344 LALFDQFPYTRHMECGVLLVRKP 366
           +  FD FP+T H E   LLVRK 
Sbjct: 354 VEWFDMFPHTDHAEVLTLLVRKD 376


>gi|240949481|ref|ZP_04753821.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor
           NM305]
 gi|240296054|gb|EER46715.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor
           NM305]
          Length = 391

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 142/394 (36%), Gaps = 48/394 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
           S   L+  Y  QLA+K+  L++++  +    Q   L    SE  H+R +A+  +    + 
Sbjct: 15  SCQWLLTDYNVQLADKMAELKRLISPYLLQNQTEVLPAVASEQTHFRNKAKMVVSGSVER 74

Query: 58  LYHIMFD--QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQID 108
               +    Q  +  + +           AL   +   I    L+       + +L  I 
Sbjct: 75  PVLGLLKDQQDAQSGVDLTDCPLYPQAFAALFPILKDFIGRAGLVPYNIAKKKGELKYIL 134

Query: 109 YLTSQSDQAIVTLIYHR--LLDDAWRECAIRLRDALHARK---YQIQLIGRA---NKTKI 160
              SQ +QAI      R             +L + L  +      IQ    A    +T+I
Sbjct: 135 LTQSQYNQAISLRFVLRSTQKQPLIERELPKLLEKLPPKSIVSLNIQPQHAAILEGETEI 194

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219
            L    V E        +        F Q N  +   +        K +      +L+CG
Sbjct: 195 FLTPKRVIEE---NFNDIPLFIRPQGFFQTNPKVASELYRTAQMWVKSLPIQQCWDLFCG 251

Query: 220 NGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            G F L  A+          +  +EI+  ++ +A  +     + NV    + S +F    
Sbjct: 252 VGGFGLHCAKALQETNPTVSLTGIEISASAIASATQSAEKLGLKNVTFASLDSAQFA--- 308

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRD 331
                      ++        + V+PPR G+  A    +     P+++Y SCN  ++  D
Sbjct: 309 -----------LNEKGSVPDLVIVNPPRRGIGKALAEYLNQLGSPYVIYSSCNAKTMAED 357

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +     + + ++ LFD FP+T H E   LLV+K
Sbjct: 358 FASFDN-YALAKVQLFDMFPHTAHYEVLTLLVKK 390


>gi|307169861|gb|EFN62370.1| HpaII tiny fragments locus 9c protein [Camponotus floridanus]
          Length = 583

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 144/435 (33%), Gaps = 95/435 (21%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----------------------- 41
           L    Y  QL  K   ++ +++       QI R                           
Sbjct: 150 LWNMPYSSQLEFKQKEMKSILMKIGQ---QIIRESKSMTDWINSQKKLYDGLPCKLQNIL 206

Query: 42  ------HYRMRAEFHIWHDGDDLYHIM------FDQQTKERMRIDYF------MPGSLLI 83
                  YR + EF I  D +     +      +   +     ID        M  ++ +
Sbjct: 207 SADIIEAYRNKCEFTIGKDSEQNKITIGFRLSSYASGSTAVAPIDNLCHIPKSMKTAVKV 266

Query: 84  NALMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
               +         P+  +    Q+   T++++  ++ +  H    D   E   +L+  L
Sbjct: 267 LETFVNESNLEPFNPVCHSGYWRQVTARTTRANHLMLIVGIHPQ--DLSNEELDKLKSQL 324

Query: 143 HARKYQIQLIGRANKTKICL--------------------DRDYVDERLTVAGRTLIYRQ 182
                +      AN T +                        +Y++E L      L +R 
Sbjct: 325 RIFFEEGGKGADANVTSLYFQTIDKKNAGSESSGTLYHVNGTEYIEETLL----GLKFRV 380

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
              +F Q N+     + +  +   +  +   LL++ CG G   L  ++H   VL +EI  
Sbjct: 381 SPQAFFQVNSSGAEVLYKAAIDLARPTKDMALLDVCCGTGTIGLCFSKHCGEVLGIEIIP 440

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +++ A+ N+  N + N +     +++                I   +    T  VDPPR
Sbjct: 441 DAIKDAKENVIKNGITNCEFFVGKAEDILS-----------PVIQRTTKSNITAIVDPPR 489

Query: 302 SGLDDATVGMVQAYP---HILYISCNPDSLCRDL---------SILSTTHTIERLALFDQ 349
           +GL    +  ++       ++YISC+P +  +++           L       +    D 
Sbjct: 490 AGLHQKALLALRKAKKLNRLVYISCDPRAAMKNVVDLARPSSKQYLGEPFVPVKAIAVDM 549

Query: 350 FPYTRHMECGVLLVR 364
           FP+T+H E  + L R
Sbjct: 550 FPHTKHCELILCLER 564


>gi|146294142|ref|YP_001184566.1| 23S rRNA methyluridine methyltransferase [Shewanella putrefaciens
           CN-32]
 gi|167012647|sp|A4Y9Y4|RUMB_SHEPC RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|145565832|gb|ABP76767.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella
           putrefaciens CN-32]
          Length = 389

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 77/375 (20%), Positives = 134/375 (35%), Gaps = 40/375 (10%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH----YRMRAEFHIWHDGDDLYHIMFDQQT 67
           QQL  K   L+Q++  F  P+  IF          +R +A+  +          +     
Sbjct: 32  QQLMAKSLELQQLLKPFVAPSAAIFYPPVTGEATAFRNKAKMVVLGAAHAPVLGIVSPSG 91

Query: 68  KERMRIDYFMPGSLL----------INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +     D  +  S +          +    I      + +  L+  L     +  +    
Sbjct: 92  EAVSLCDCLLYPSDMQKLLHRLTQFVQQAGIPPYRVDKAKGELKFILLTRSQVRGEYLLR 151

Query: 118 IVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRA---NKTKICLDRDYVDERLT 172
            V L  H  ++   R     L +   ++     IQ I  A      +I L  +    RL 
Sbjct: 152 FV-LRSHNSIERIERALPTLLAEYPQINVVSVNIQPIHMAILEGGEEIFLTENT---RLE 207

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
                +       SF Q N  +   + +             L +L+CG G F L  A   
Sbjct: 208 ERFNDVPLFIRPKSFFQTNPQVAAQLYQTAREWVAEFAPKSLWDLFCGVGGFGLHCATKD 267

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             +  +EI   ++  A+ +     +  V+ + + S +F Q                   +
Sbjct: 268 IALTGIEIEAEAISCAQISANLMGLEKVQFMALDSTDFAQGKNAAD-------------K 314

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349
              I V+PPR G+ +A    +   A   ILY SCNP +L +DL  +   + + ++ LFD 
Sbjct: 315 PDLIIVNPPRRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHI-QGYHLTKVQLFDL 373

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H E   +LV+
Sbjct: 374 FPHTDHFEVLAMLVK 388


>gi|218262095|ref|ZP_03476683.1| hypothetical protein PRABACTJOHN_02355 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223595|gb|EEC96245.1| hypothetical protein PRABACTJOHN_02355 [Parabacteroides johnsonii
           DSM 18315]
          Length = 475

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 67/390 (17%), Positives = 133/390 (34%), Gaps = 63/390 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-----FRSEPIHYRMRAEFHIWHDG- 55
                   YE+Q+  K  ++   +       ++             YR + EF   +   
Sbjct: 106 GCKWQHLPYEEQIRYKHKQVIDNLTRIGKIKMEEVLPIKGSKHTTFYRNKLEFTFSNKKW 165

Query: 56  --------DDLYHIMFDQQTK------ERMRIDYFMPGSLLINALMIEMMATI------- 94
                      +  M            + + I      + + N + + +           
Sbjct: 166 LTEEEVKTGAKFDCMNAVGFHIPGMFDKVLDIHKCWLQNDISNRIRLAVKEYCLTHEGYP 225

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-------RLLDDAWRECAIRLRDAL 142
                  E L+R  + +    T+ +   +V L++          L     E    +   +
Sbjct: 226 FFDLRNQEGLVRTLMIR----TASTGDLMVVLVFFYEDVERREALLSHIAEQFPEITSLM 281

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
           +    +           +   +D++ E +      L ++    SF Q N+G     L  V
Sbjct: 282 YVINGKCNDTITDQDVLVFRGKDHIIEEM----EGLQFKVGPKSFYQTNSGQAYE-LYKV 336

Query: 203 LAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                G+ G+  + +LY G G  +  ++R   +V+ +E    ++E A+ N A N + N  
Sbjct: 337 AREFAGLTGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNKIENTL 396

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHI 318
                 K+              +D      R   I  DPPR+G+ D  +  +       I
Sbjct: 397 FYAGDMKDILT-----------QDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERI 445

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFD 348
           +Y+SCNP +  RDLS+LS  + ++++   D
Sbjct: 446 VYVSCNPATQARDLSLLSVKYAVKKVQPVD 475


>gi|157963447|ref|YP_001503481.1| 23S rRNA methyluridine methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|157848447|gb|ABV88946.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella pealeana
           ATCC 700345]
          Length = 358

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 142/373 (38%), Gaps = 36/373 (9%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ--QTKE 69
           Q+A K   L Q++  F+V    +        +R +A+  +          +     +   
Sbjct: 4   QVAAKSQVLSQLLSDFEVEQWHEPVFGPDSGFRNKAKMVVLGAAHQPILGIVTPTGEPVS 63

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQSDQAIV---TLI 122
               + +     L+   + + +    + P      + +L  I    SQ     +    L 
Sbjct: 64  LCDCNLYPEDMQLLLHRLEQFVRQAGIPPYNVDKAKGELKFILLTRSQIKGEYLLRFVLK 123

Query: 123 YHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVAGRT 177
            H+ ++   RE    L +   +      IQ +  A    + +I L  +    RL+     
Sbjct: 124 SHKSIERIERELPKLLSEYPQIKVVSVNIQPVHMAILEGEEEIFLTEET---RLSEQFND 180

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           +       SF Q +  I   + +        ++   L +L+CG G F L  A     +  
Sbjct: 181 VPLFIRPKSFFQTHPQIAAKLYQTAREWVAELKPSSLWDLFCGVGGFGLHCASKTIPLTG 240

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +EI+  ++  A+ +     +  V    + S  F Q                   +   + 
Sbjct: 241 IEISSEAIACAKISAETMGLTQVDFTALDSTGFAQGCDATD-------------KPDVVI 287

Query: 297 VDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
           V+PPR G+ ++    +   A   ILY SCNP +L +DL+ +   + I+++ LFD FP+T 
Sbjct: 288 VNPPRRGIGESLCQSLSDFAPKAILYSSCNPHTLAKDLANI-QGYHIQKVQLFDMFPHTD 346

Query: 355 HMECGVLLVRKPS 367
           H E  V+LV KPS
Sbjct: 347 HFEVLVMLV-KPS 358


>gi|88797954|ref|ZP_01113541.1| 23S rRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297]
 gi|88779151|gb|EAR10339.1| 23S rRNA (uracil-5-)-methyltransferase [Reinekea sp. MED297]
          Length = 414

 Score =  196 bits (497), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 52/370 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDL 58
              L       QLA K   ++      ++P +       S P+ YR RA FH+   G   
Sbjct: 88  GCQLQHLSATDQLALKQQAVQDHFHRNRLPAIGFTDPLVSAPVGYRHRARFHLSKSGTLG 147

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           +H     + ++ + ++     +  + AL+  +     L+ L + +L              
Sbjct: 148 FHG---ARGRQVIPVEQCPVITTELQALLDRVRREAPLKGLQQLEL-------------- 190

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
                   +DDA +  A  ++ +  AR+   Q             +D++ E LT    T 
Sbjct: 191 -------TVDDAGKAGARAVKASDSARQAFEQWQNA---------QDWLTEELTYQAGTQ 234

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
           +       FTQ N  IN  ML+ +    +  + D LL+L+CGNGN SL +      +L +
Sbjct: 235 VVTARPGDFTQVNREINQQMLKQIRQWLQPREDDRLLDLFCGNGNISLAMLDEVAAILGL 294

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E + P++EAA+  +     ++ K   + +  FT  ++   +        +  +      +
Sbjct: 295 ESSGPAIEAAKAAVK----HHPKAQFLEADLFTSCLQVRPQ--------VAEFAPTIAVL 342

Query: 298 DPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTR 354
           DPPR+G +     +  + +   ++Y+SC+P +L RDL+ L+  H  + +  L D FP TR
Sbjct: 343 DPPRAGAEQVVQWLSELPSLTRLVYVSCDPATLARDLAQLTADHWHLRKAGLIDMFPQTR 402

Query: 355 HMECGVLLVR 364
           H+E  VLL +
Sbjct: 403 HIETMVLLKK 412


>gi|33592796|ref|NP_880440.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella pertussis
           Tohama I]
 gi|50401525|sp|Q7VXM6|RUMA_BORPE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|33572444|emb|CAE42012.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332382209|gb|AEE67056.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella pertussis
           CS]
          Length = 466

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 136/370 (36%), Gaps = 37/370 (10%)

Query: 12  QQLAEKVDRLRQMM---LAFQVPNL-QIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q+A K   L          +   +          YR RA   +        +     ++
Sbjct: 85  AQVAIKQRALEDTFWHVGKLKPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHER 144

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     +         ++ L++ + A I        ++ QI+      D+ IV ++ H 
Sbjct: 145 KSSYVADMRECHVLPPAVSRLLLPLRAMIAAMSA-PDRMPQIEVALG--DETIVLVLRHL 201

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---ERLTVAGRTLIYRQ 182
           L         +R   A H  ++ +Q   +   T   L+R++ D     L   G  + YR 
Sbjct: 202 LPLTDGDIAVLRAFAAEHGVQWWLQ--SKGPDTVHPLEREHADALAYTLPEFGLRMPYR- 258

Query: 183 IENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
               FTQ N  IN  M+   L       Q  + +L+CG GNF+L LA      + VE +K
Sbjct: 259 -PTDFTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSK 317

Query: 242 PSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              + A    A + +    +   ++  E      R   +            F  + +DPP
Sbjct: 318 ALTDRAHEAAARHGLGERTRFATLNLFEVDVQWLRGLGY------------FDRMLIDPP 365

Query: 301 RSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYT 353
           R G       +    P      I+Y+SC+P +L RD +I+     + +    + + FP+T
Sbjct: 366 REGAQAVAQALSLLAPGERPRRIVYVSCSPGTLARDAAIMVHEGGYALRSAGVINMFPHT 425

Query: 354 RHMECGVLLV 363
            H+E   +  
Sbjct: 426 GHVESIAVFE 435


>gi|281206857|gb|EFA81041.1| hypothetical protein PPL_05876 [Polysphondylium pallidum PN500]
          Length = 666

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 140/422 (33%), Gaps = 74/422 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLA-----------------------FQVPNLQIFRSEP-IHYR 44
           +Y  QL +K   +  ++                            P  +I  S    HYR
Sbjct: 202 EYSVQLEKKEANVTNVLRDMTSSIRKECTSQPQWLQALKGRVVACPLEEIVPSPETSHYR 261

Query: 45  MRAEFHIWH--DGDDLYHIMFDQQTKERMRIDY---FMPGSLLINALMIEMMATIRLEP- 98
            +  + I    DG+        +       +      +  S   NA+ + +   IR  P 
Sbjct: 262 NKTSYTIGRLEDGNPCVGFALGRTGNGVTVVGDPTPCLIISERSNAIRLHLQEYIRAHPR 321

Query: 99  ------LLRAKLFQIDYLTSQSDQAIVTL-IYHRLLDDAWR--ECAIRLRDALHARKYQI 149
                        Q++     + Q + T+   HR L +     EC   +     A+  + 
Sbjct: 322 PPFDKTTHTGFWRQLNVRDFTTGQTMATVQFNHRGLSEEEITGECNQLIELFARAKGTKA 381

Query: 150 QLIGRANK--------------TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
           ++   + +               KI    + + E+L        +    N+F Q N+   
Sbjct: 382 EVTSLSVQLYDGVSNAAPVDLPVKIIDGPETIVEKLLGKE----FHVSSNAFFQVNSKAA 437

Query: 196 VHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             +   V        +  +L++ CG G     ++     V  +E+A  +V  AR N   N
Sbjct: 438 ESLFSKVTEWAGVNERSIVLDVCCGTGTIGQCISDKARHVYGLEMAPDAVADARVNAERN 497

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG---M 311
            + N+  +   +++ T  + +    N     D          VDPPR+GL    +     
Sbjct: 498 GIKNIDYIVGKAEDTTDKLLQMIHQNYRDAKDGEIIG----IVDPPRAGLHQNVIKSLRT 553

Query: 312 VQAYPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLL 362
           ++    ++Y+SCN +SL  D + L                +    D FP+T H E  VL 
Sbjct: 554 LETMKKLVYVSCNQNSLIVDAARLCKSITNTMKGTPFRPVKAIAVDLFPHTEHCEVVVLF 613

Query: 363 VR 364
            R
Sbjct: 614 ER 615


>gi|224007631|ref|XP_002292775.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971637|gb|EED89971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 387

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 138/378 (36%), Gaps = 70/378 (18%)

Query: 9   QYE-----QQLAEKVDRLRQMMLAFQVPNLQIFR--------SEPIHYRMRAEFHIWHDG 55
           QY+     +Q   K ++++++         + F          E   YR +         
Sbjct: 56  QYQHINIGRQRQMKTEQVQELFERIGGLKAEDFPTVLDTLGTEEVFGYRSKI-------- 107

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
              ++ +   ++ E   I +    S  +  +    +AT  +   L               
Sbjct: 108 -TPHYDVITNKSCEIGPIGFKEKASRRLVDVPYCHIATPDINTALS-------------- 152

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
                      + +  R+ A++ +    A+   + L    +         YV+  +    
Sbjct: 153 ----------KVREETRDKAVQGKLKKPAKGATLLLRDAGDGLVETNHVAYVNTTV---- 198

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATK------GIQGDLLELYCGNGNFSLVLAR 229
           + L +R    +F Q N  +   M++ V+ A             L++ YCG+G F+L  + 
Sbjct: 199 KDLTFRFQAGNFFQNNPFMLPKMVDLVVDAATIKSSSGEAMTHLIDCYCGSGLFALGCSS 258

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
            FD  + +E+   +V+ AR N   N + N   V  S++              L    +  
Sbjct: 259 SFDVCVGIEVNDKAVQEARANAELNGIKNCDFVSASAEAIF-----------LSKDPVKG 307

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLAL 346
                + VDPPR G  +  +  +  Y    ++Y+SC+P +  RD   L +  + I  +  
Sbjct: 308 KESTVVVVDPPRKGCSEEFLEQLDEYKPQRVVYMSCDPATQARDAKFLVAHGYDIVSVQP 367

Query: 347 FDQFPYTRHMECGVLLVR 364
           FD FP TRH+EC  +  R
Sbjct: 368 FDLFPQTRHIECLAIFER 385


>gi|118089359|ref|XP_420190.2| PREDICTED: similar to CXorf34 protein [Gallus gallus]
          Length = 478

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 90/415 (21%), Positives = 149/415 (35%), Gaps = 69/415 (16%)

Query: 9   QYEQQLAEKVDRLRQMML-----------------AFQVPNLQIFRSEPI-HYRMRAEFH 50
            Y++QL  K + LR+++                      P   +  S  I  YR ++ F 
Sbjct: 74  PYQEQLQVKYESLREVLQTLTSHLLELGGAVQDPSGLCCPLQPVVPSPTINGYRNKSTFS 133

Query: 51  I--WHDGDDLYHIMFDQQTKER----MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL 104
           +    DG+     ++    + R    +R D+     L    +       IR  PL    L
Sbjct: 134 VNRGPDGNPKTVGLYVGTGRARNIVCVRTDHMKNTPLQHKQVAQCYEQFIRRSPLDSCIL 193

Query: 105 FQID-------YLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRD----------ALHAR 145
           F            TSQ     AIVT    +L  +A       LR+          AL + 
Sbjct: 194 FHEGGHWRELVVRTSQHGHTMAIVTFHPQQLGQEALAAQKALLREFFTCGPGAVCALTSL 253

Query: 146 KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
            +Q   + R +         + +  +      L +R   ++F Q N      +   V   
Sbjct: 254 YFQESTMTRCSHEHSPFQLLHGEPHIFEDVLDLRFRISPDAFFQVNTSGAEVLYRVVREL 313

Query: 206 TKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           ++     +L ++ CG G   L LARH  +V+ VEI + ++E AR+N A N ++N +    
Sbjct: 314 SQAAGDTVLLDVCCGTGTIGLSLARHVSKVIGVEIVQKAIEDARWNAAFNGISNCEFHSG 373

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYI 321
            ++    A+                 R     V+P R+G+    V  +++   I   LYI
Sbjct: 374 KAEAVIPALLS----------SWEDARPLVAVVNPSRAGIHHRVVKAIRSCRAIRRLLYI 423

Query: 322 SCNPDSLC-RDLSILSTTHTIER-----------LALFDQFPYTRHMECGVLLVR 364
           SC P+    R+   L       +               D FP+T H E  +LL R
Sbjct: 424 SCKPEGEAMRNFLELCCPPDPRKKLEGEPFAPALAVPVDMFPHTAHCELVLLLTR 478


>gi|167032268|ref|YP_001667499.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas putida
           GB-1]
 gi|166858756|gb|ABY97163.1| RNA methyltransferase, TrmA family [Pseudomonas putida GB-1]
          Length = 452

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 142/371 (38%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHD--G 55
              L    ++ QLA K   L + +        +            YR RA   +  D   
Sbjct: 101 GCNLQHLPHQAQLALKQRTLAEQLQRVAGVQPEEWAAPLSGPEFGYRRRARVAVRWDIKA 160

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             L      + +++ + ID        + +++  +   +R     +A L  ++  +  ++
Sbjct: 161 RQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLNKPQA-LGHVELFSGTAE 219

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +V     R +     E   RL+        Q+ L G      +            +A 
Sbjct: 220 AVLV-----RHVAPLPAEDLARLQAFCEQANAQLWLQGEGEPAPV---DPAAQLGFALAP 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L        F Q NA +N  M+E  LA       + +L+L+CG GNF+L LAR    V
Sbjct: 272 WQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREV 331

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +AVE  +  V+ A  N   N+V+N +  +    +             L      +  F  
Sbjct: 332 VAVEGVQAMVDRAAANARNNNVHNARFFQADLSQ------------PLAGTGWAAEGFSA 379

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR G  +   G+ +     ++Y+SCNP +L RD  +L    + ++R  + D FP 
Sbjct: 380 VLLDPPRDGAFEVVQGIARLKASRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQ 439

Query: 353 TRHMECGVLLV 363
           T H+E   L  
Sbjct: 440 TAHVEAMALFE 450


>gi|229514343|ref|ZP_04403804.1| RNA methyltransferase TrmA family [Vibrio cholerae TMA 21]
 gi|229348323|gb|EEO13281.1| RNA methyltransferase TrmA family [Vibrio cholerae TMA 21]
          Length = 375

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 143/383 (37%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S  L    Y QQ+  K  +L +++     V  L    S    +R +A+  +         
Sbjct: 13  SCHLCAQPYSQQVENKDQQLHELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            + D Q +    +    +      + A +   +    + P         L+  L      
Sbjct: 73  GIEDAQGQPLSLVTCPLYPQPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTQSEN 132

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECA--IRLRDALHARKYQIQLIGRAN---KTKICLDRD 165
           + Q     V    H +L+   R           +      IQ +  A    + +I L   
Sbjct: 133 SGQFMLRFVAR-SHAVLERIERNLPMLTAAFPMIEVISVNIQPVHMARLEGEEEIFLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
              + L      +       SF Q N  +   +     A  + I    + +L+CG G F+
Sbjct: 191 --TQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATARAWVREIAPTQMWDLFCGVGGFA 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     V  +EI   ++ +A+ +     ++N+    + S +F+Q+     E      
Sbjct: 249 LHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL----- 303

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR GL       ++  A  HILY SCNP ++ +D++ L++ + + 
Sbjct: 304 ----------VLVNPPRRGLGSELTAQLEALAPQHILYSSCNPQTMVKDIAELAS-YQMI 352

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+  FD FP+T H E   LLVRK
Sbjct: 353 RVQWFDMFPHTDHAEVLTLLVRK 375


>gi|168240762|ref|ZP_02665694.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194448777|ref|YP_002044912.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194407081|gb|ACF67300.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205340264|gb|EDZ27028.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 375

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 128/385 (33%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPIGGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 CIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|120597721|ref|YP_962295.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. W3-18-1]
 gi|143582979|sp|A1RGE6|RUMB_SHESW RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|120557814|gb|ABM23741.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp.
           W3-18-1]
          Length = 389

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 136/377 (36%), Gaps = 44/377 (11%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSEPIH----YRMRAEFHIWHDGDDLYHIMFDQQT 67
           QQL  K   L+Q++  F  P+  IF          +R +A+  +          +     
Sbjct: 32  QQLMAKSLELQQLLKPFVAPSAAIFYPPVTGEATAFRNKAKMVVLGAAHAPVLGIVSPSG 91

Query: 68  KERMRIDYFMPGSLL----------INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +     D  +  S +          +    I      + +  L+  L     +  +    
Sbjct: 92  EAVSLCDCLLYPSDMQKLLHRLTQFVQQAGIPPYRVDKAKGELKFILLTRSQVRGEYLLR 151

Query: 118 IVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRD---YVDE--R 170
            V L  H  ++   R     L +   ++     IQ I  A      L+ D   ++ E  R
Sbjct: 152 FV-LRSHNSIERIERALPTLLAEYPQINVVSVNIQPIHMA-----ILEGDEEIFLTENTR 205

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L      +       SF Q N  +   + +             L +L+CG G F L  A 
Sbjct: 206 LEERFNDVPLFIRPKSFFQTNPQVAAQLYQTAREWVAEFAPKSLWDLFCGVGGFGLHCAT 265

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               +  +EI   ++  A+ +     +  V+ + + S +F Q                  
Sbjct: 266 KDIALTGIEIEAEAISCAQISANLMGLEKVQFMALDSTDFAQGKNAAD------------ 313

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
            +   I V+PPR G+ +A    +   A   ILY SCNP +L +DL  +   + + ++ LF
Sbjct: 314 -KPDLIIVNPPRRGIGEALCQSLSEFAPRAILYSSCNPKTLAKDLEHI-QGYHLTKVQLF 371

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP+T H E   +LV+
Sbjct: 372 DLFPHTDHFEVLAMLVK 388


>gi|171463398|ref|YP_001797511.1| RNA methyltransferase, TrmA family [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192936|gb|ACB43897.1| RNA methyltransferase, TrmA family [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 475

 Score =  195 bits (496), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 139/392 (35%), Gaps = 43/392 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR---QMMLAFQVPNLQIFRSEP-IHYRMRAEFHI---WHD 54
             T+       Q+A K   L    Q +   +   +      P   YR RA          
Sbjct: 97  GCTMQHLDIRAQVAMKQRVLEDDLQHIAKVKSEEILCPMGGPTWEYRHRARLSAVNRSIK 156

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
              +     + ++     +         ++ L+ EM   +    ++  ++ QI+    + 
Sbjct: 157 KGTVLIGFHEGKSGYVADMLACEILPKHVSDLLPEMRKLVMGLSIV-DRMPQIEIAIGEP 215

Query: 115 DQAI---------VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-- 163
           + A          VT +  R L     E    LR      +  I L  +  +T       
Sbjct: 216 EDAQSDDPQKSKPVTALVFRNLKPLTTEDEQLLRAFADQHEVWIWLQPKGIETIAPFYPL 275

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
              +  RL      + ++     FTQ N  +N  ++   +          +L+L+CG GN
Sbjct: 276 TGKLCYRLPEFEIEMPFK--PCDFTQVNHMMNRALVSRAIRLLEVQPTDRVLDLFCGIGN 333

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+L LAR   +VL +E  +     A+ N   N ++           F Q+      F   
Sbjct: 334 FTLPLARKAKQVLGIEGLESLTARAKSNAQHNGLS-------DKASFMQS----DLFEVT 382

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--------PHILYISCNPDSLCRDLSI 334
            +        +   +DPPR G  D    + + +          I+Y+SCNP +L RD+ I
Sbjct: 383 SETVASWGGAERWLMDPPRKGAMDICKALAELHLQQSDLLPERIVYVSCNPKTLARDVEI 442

Query: 335 LS--TTHTIERLALFDQFPYTRHMECGVLLVR 364
           L     + +    + + FP+T H+E  V+  R
Sbjct: 443 LCHQAGYRLSSAGIINMFPHTSHVESMVVFDR 474


>gi|153002005|ref|YP_001367686.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS185]
 gi|167012645|sp|A6WS34|RUMB_SHEB8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|151366623|gb|ABS09623.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS185]
          Length = 390

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 140/378 (37%), Gaps = 45/378 (11%)

Query: 12  QQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           QQ+A K   L+Q++  F   N     L     +   +R +A+  +     +    +    
Sbjct: 32  QQVAVKTQTLQQLLAPFIPANSAELFLPPITGDDSGFRNKAKMVVLGAAHEPVLGIVSPS 91

Query: 67  TKERMRIDYFM-PGSLL---------INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            +     D  + PG +          +    +      + +  L+  L     +  +   
Sbjct: 92  GEAVDLCDCLLYPGDMQALLHRLTRFVQQAGLPPYRVDKAKGELKFILLTRSQVRGEYLL 151

Query: 117 AIVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRD---YVDE-- 169
             V L  H  ++   RE    L +   +      IQ I  A      L+ D   ++ E  
Sbjct: 152 RFV-LRSHNGIERIERELPALLAEYPQIKVVSVNIQPIHMA-----ILEGDEEIFLTENT 205

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           RL      +       SF Q N  +   + +             L +L+CG G F L  A
Sbjct: 206 RLEERFNHVPLFIRPKSFFQTNPQVAAQLYQTARDWVAEFSPRSLWDLFCGVGGFGLHCA 265

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
            +   +  +EI   ++  A+ +     + NV+ + + S +F +                 
Sbjct: 266 SNDITLTGIEIEAEAIACAQMSAQMMGLENVQFMALDSTDFAKGKSAAD----------- 314

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
             +   I V+PPR G+ +A    +   A   ILY SCNP +L +DL  +   + + ++ L
Sbjct: 315 --KPDLIIVNPPRRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHI-QGYHLTKVQL 371

Query: 347 FDQFPYTRHMECGVLLVR 364
           FD FP+T H E   +LV+
Sbjct: 372 FDLFPHTDHFEVLAMLVK 389


>gi|10437555|dbj|BAB15067.1| unnamed protein product [Homo sapiens]
          Length = 475

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 131/421 (31%), Gaps = 76/421 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 29  PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQTE 88

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 89  YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 148

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDALHA--- 144
                           Q+   TS+  QA+    +H  +L  +   E    L     A   
Sbjct: 149 TPYSAYDPETYTGHWKQLTVRTSRRHQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPG 208

Query: 145 -RKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                  L       +       + L+    D  +      L +R   ++F Q N     
Sbjct: 209 RASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 268

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +    +   G  +L++ CG G   L LAR   RV+ VE+   +VE AR N   N 
Sbjct: 269 VLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 328

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV+     +++    +        L              +DPPR+GL    +  ++  
Sbjct: 329 LSNVEFHCGRAEDLVPTLVSRLASQHL-----------VAILDPPRAGLHSKVILAIRRA 377

Query: 316 P---HILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
                +LY+SCNP +   +   L                +    D FP T H E  +L  
Sbjct: 378 KNLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFE 437

Query: 364 R 364
           R
Sbjct: 438 R 438


>gi|260597259|ref|YP_003209830.1| 23S rRNA methyluridine methyltransferase [Cronobacter turicensis
           z3032]
 gi|260216436|emb|CBA29543.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Cronobacter turicensis
           z3032]
          Length = 375

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 125/383 (32%), Gaps = 39/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +    + QLA K+  LR ++    V             +R +A+  +    +    
Sbjct: 13  SCQWIEQPLDTQLAAKMTDLRTLLADLPVNEWGAPVSGPEQAFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQTKERMRIDYFM--PGS---------LLINALMIEMMATIRLEPLLRAKLFQIDY 109
            M  +     + +      P S           I    +      R    L+  L     
Sbjct: 73  GMLHRDG-TPVDLTECPLYPASFYTVFAAIKPFIARAGLTPYNVARKRGELKYLLLTQST 131

Query: 110 LTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           L        V     +L             +     + A    + +       +I L   
Sbjct: 132 LDGGLMLRFVLRSKEKLEQLRAALPALLAQLPQLKVVTANIQPVHMAIMEGDEEIWL--- 188

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              + L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 189 TAQQALAENFNGVPLWIRPQSFFQTNPTVASALYATARDWVRALPVNHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     +  +EIA  ++   R +     + +V    + S +F    +          
Sbjct: 249 LHCATPEMTLTGIEIAPEAIACCRASAQELGLRSVHFQALDSTDFATGQQA--------- 299

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR G+ +A    + +  P  ++Y SCN  ++ +D+  L   + + 
Sbjct: 300 ------VPDLVLVNPPRRGIGEALCEYLSRMAPRYMVYSSCNAQTMAKDIKQL-RGYRVV 352

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           R+ LFD FP+T H E   LLVR+
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLVRE 375


>gi|37525531|ref|NP_928875.1| 23S rRNA methyluridine methyltransferase [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|50401494|sp|Q7N6G6|RUMB_PHOLL RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|36784959|emb|CAE13877.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 377

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 137/380 (36%), Gaps = 37/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM-LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQL +K   L+Q++  A     L    S+   +R +A+  +    +    
Sbjct: 13  SCQWLEKPYSQQLEDKQQNLKQLLPQAIVKQWLPPIASQQDAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYL 110
            M  +     +      +      +  ++   +A   L P         L+  L      
Sbjct: 73  GMLHRDGTAVDLCHCPLYPAHFQPVFDVVKSFIACAGLTPYNVARKRGELKYLLLTESRH 132

Query: 111 TSQSDQAIVTLIYHR--LLDDAWRECAIRLRDALHARKYQIQLIGRA--NKTKICLDRDY 166
           + +     V     +   L+ A      +L   L      IQ I  A     K  L  + 
Sbjct: 133 SGEMMLRFVLRSETKIAQLERALPRLHEQLPQ-LTVISANIQPIHMAILEGEKEILFTE- 190

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
             +        +      +SF Q N  +   +        + ++   + +L+CG G F L
Sbjct: 191 -QKAFKEQFNGIPLYIRPHSFFQTNPKMASELYATAGRWVRELKISSMWDLFCGVGGFGL 249

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             A     +  +EI+  +++ AR +     + N++   + S  F  A             
Sbjct: 250 HCADKNTCLTGIEISSEAIDCARDSAKTLGLENIEFQALDSTHFAVA------------- 296

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIER 343
                  + + V+PPR G+       +      +ILY SCN  ++ +D++ L+  + +E+
Sbjct: 297 --KDQIPQLVLVNPPRRGIGKVLCDYLSKMVPDYILYSSCNAQTMAKDIAALAN-YRVEK 353

Query: 344 LALFDQFPYTRHMECGVLLV 363
             LFD FP+T H E   LLV
Sbjct: 354 TQLFDMFPHTEHYEVLTLLV 373


>gi|198284531|ref|YP_002220852.1| TrmA family RNA methyltransferase [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667266|ref|YP_002427198.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|254766918|sp|B7J921|RUMA_ACIF2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|254766919|sp|B5EPA4|RUMA_ACIF5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|198249052|gb|ACH84645.1| RNA methyltransferase, TrmA family [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519479|gb|ACK80065.1| 23S rRNA (uracil-5-)-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 440

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/372 (21%), Positives = 139/372 (37%), Gaps = 25/372 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH-DGD 56
             +L   +   Q+A K  +L   +        +          + YR +A   +      
Sbjct: 85  GCSLQHLEPAAQVAIKQRQLEDHLWRIGKVRPERVLPPIHGPSLGYRSKARLSVRTPKTR 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                  ++ +   + +   +     +   ++ +   I           QI+   +    
Sbjct: 145 GAMVGFRERNSSYVVDMGQCLTLDPRVGQRILSLRTLIGQMQS-PQDFPQIEVAATPDAV 203

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-RLTVAG 175
           A+V   + R L ++       LR        QI L  R  +T   L  +  +     +  
Sbjct: 204 ALV-FRHMRPLAES---DLQHLRAFGEQHDLQIWLQPRGPETLYPLWPEQPEPLHYDLPD 259

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L  R     FTQ N   N  M+   +A  +   G+ +L+L+CG GNF+L +AR   +V
Sbjct: 260 YRLRLRFDPLVFTQVNQAANQVMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQV 319

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E     V  A  N AAN + +         + TQA        R++D    +     
Sbjct: 320 LGIEGDARLVALAAENAAANGLADKARYA--VADLTQA--------RMEDF-APAGAIDK 368

Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPY 352
           + +DPPRSG  +    +      ++Y+SCNP +L RD   L     + +    + + FP+
Sbjct: 369 MLIDPPRSGAIEVLRSLTPGVRRLVYVSCNPATLARDAEYLVHERGYRLRAAGVVNMFPH 428

Query: 353 TRHMECGVLLVR 364
           T H+E   L  R
Sbjct: 429 TAHVESIALFER 440


>gi|242002062|ref|XP_002435674.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
 gi|215499010|gb|EEC08504.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
          Length = 494

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/411 (20%), Positives = 140/411 (34%), Gaps = 73/411 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV------------------------PNLQIFRSE-PIHY 43
            YEQQL +K D +R++++ +                          P L I  S     Y
Sbjct: 83  PYEQQLQQKQDLVRKVLVKYARKLEATNPALRPWLKQQREAHGGCCPVLPIRASPVTEGY 142

Query: 44  RMRAEFHIWH---DGDDLYHIMFDQQTKERMRI------DYFMPGSLLINALMIEMMATI 94
           R + EF +      G+           +  M +            +  +     E +   
Sbjct: 143 RNKNEFSVGRHLATGEATVGFRLSSYRQGSMSVAPPDALPNVPASAKAVTRCFQEYVRQS 202

Query: 95  RLEPLLRAK----LFQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIRLRDALHARKYQ 148
             EP           Q+   TS     +  ++ H   L +    E   +LR+   +   Q
Sbjct: 203 GKEPFDPESHGGYWRQLTVRTSCEGHVMAIVVIHPQGLTEAEITEEKRKLREFFESGPGQ 262

Query: 149 IQLI----------GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
           +  +           R    +   +  +    L    R L +R   ++F Q N      +
Sbjct: 263 VCGVTSLYLQRFDKKRPEGEQAEFEHLFGTTELEERVRGLSFRVGPDAFFQVNTPAAEVL 322

Query: 199 LEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LE     A  G +  LL++ CG G   L +A    RV  VE+ K +VE A+ N  AN + 
Sbjct: 323 LEVAEDLAALGPRTTLLDVCCGTGTIGLCMAAKVARVYGVEVCKRAVENAKRNAEANGIG 382

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--- 314
           N   V   +++    +             +         VDPPR GL +  +  ++A   
Sbjct: 383 NASFVLGRAEDTMHDV----------MHTLRDSEDMVAVVDPPRQGLHNKVLRALRATAS 432

Query: 315 YPHILYISCNPDS-------LCRDLS--ILSTTHTIERLALFDQFPYTRHM 356
              ++YISCNP+        L R  S         + + A  D FP+T H 
Sbjct: 433 IKRLVYISCNPEGALQNFLDLARPASNNYRGQPFVVVKAAPVDMFPHTPHC 483


>gi|46445882|ref|YP_007247.1| putative RNA methyl transferase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|51316633|sp|Q6MEM7|Y248_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc0248
 gi|46399523|emb|CAF22972.1| putative RNA methyl transferase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 434

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 150/371 (40%), Gaps = 28/371 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSE-PIHYRMRAEFHIWHDGDD 57
              L     + QL  K+  +   +       VP++++  ++    YR     H+      
Sbjct: 83  GCQLQHLNEQTQLNYKLTAITDTLKRIGHLKVPSVEMNTAQLNWAYRRHITLHLKSFNQS 142

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                        + ID     + L + ++  +   I   P    +  ++  L +Q+ Q 
Sbjct: 143 FQAGYIATDHFSLISIDTCPIFNNLHDPIISILQKFISTLPNPNQQDGRLTLLKNQNSQY 202

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I++  +   L++  R       +          ++  + K +  +   Y ++++      
Sbjct: 203 ILSFQFCS-LNELNRILFQEALEKYPIFSG---ILVTSPKKQWIIGNPYSEQKI----EN 254

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLA 236
           LI+R    +F Q +   ++++ + + + T  ++   +L+LYCG G  SL+LA     V  
Sbjct: 255 LIFRFTPQAFIQNHPEQSLYIYKKICSLTIQLKSKKILDLYCGFGITSLLLASQGHFVTG 314

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E    ++  A+ N   NH+ +V+ +    ++      + ++                + 
Sbjct: 315 IEYNSDAIRFAKENSKLNHLPHVEFLEGDVEKILPICLKSQK------------CVDLVI 362

Query: 297 VDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYT 353
           V+PPR GL  + + ++       ++YISC P +L RDLSIL    + I     +D FP T
Sbjct: 363 VNPPRIGLSKSVIKILMSALPEDMIYISCMPSTLARDLSILCEDLYEIHECTAYDMFPQT 422

Query: 354 RHMECGVLLVR 364
            H+E  V L +
Sbjct: 423 SHVETLVHLKK 433


>gi|212224096|ref|YP_002307332.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009053|gb|ACJ16435.1| 23S rRNA (uracil-5-)-methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 419

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 149/380 (39%), Gaps = 49/380 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLY 59
            G L    +Y++QL  K     ++       +  +  S     +R  + F +   G  L 
Sbjct: 73  GGCLWQGMKYKEQLRFKA----ELFERITGISADVRGSPKIWGFRNVSNFIVTAAGIGLK 128

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTSQ-- 113
                      +        S      +  +   +    L    LR K   + YL  +  
Sbjct: 129 EYGNPLD---VVDSRECPIFSKRTREYLNALRGFLEESGLRPWDLRKKRGDVHYLQIKEG 185

Query: 114 --SDQAIVTLIYH----RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
             + + +V LI H    R +  A+R+      D+L+      +      +  +   + Y+
Sbjct: 186 KFTGEVMVNLIAHVQPTREVLQAFRDYFS-FADSLYWSFKADERDDPKGEPGLIAGQPYI 244

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
            ER+    + ++Y    NSF Q N+     +L+ V     G    +L+LY G G F + L
Sbjct: 245 RERI----KDVVYLIHPNSFFQTNSYALALLLKTVEGFADGE--RVLDLYSGVGTFGVWL 298

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+    V  VE+   +VE AR N   N V+ V      ++E +                 
Sbjct: 299 AKRGFAVEGVELNPFAVEMARKNAELNGVD-VVFKVGRAEETS----------------- 340

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLS-ILSTTHTIERLA 345
               + T+ VDPPR GL +A+  +++     ++Y+SCNP +   D    L   + +E   
Sbjct: 341 -IGDYDTVIVDPPRKGLKEASKLLIKSGVEGVVYVSCNPRAFKLDYENHLKKAYQVEEAV 399

Query: 346 LFDQFPYTRHMECGVLLVRK 365
           L D FP+T H+E  ++L +K
Sbjct: 400 LADMFPHTPHVEAVIMLEKK 419


>gi|33152777|ref|NP_874130.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|50401521|sp|Q7VKU9|RUMA_HAEDU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|33149001|gb|AAP96519.1| 23S rRNA (Uracil-5-)-methyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 442

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 148/371 (39%), Gaps = 31/371 (8%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDD 57
            G  +   + + Q   K     + +   Q   +    +   +  HYR R +  +    + 
Sbjct: 95  GGCQMQHIKLDVQRQTKQQAFFKQLQRLQTEPIDWQPMISGQDKHYRRRTKLSMAIQRNQ 154

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           L      Q T + + +         ++ L+ ++   +     ++  L  I+ + + + +A
Sbjct: 155 LVIGFRQQNTHQIIPLTDCEVLEQPLSTLLPKLQH-LFAGWKMKKALGHIELVNADNTRA 213

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           ++ L   ++      +    L +   A +  + L+   N  +             + G T
Sbjct: 214 MLVLHIGKI----NAQDQHMLLNFAKAEQLSLYLMCDENHIEHLCGEAPY---YQINGLT 266

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           L +      F Q N  +N  M+   L        D +L+L+CG GNFSL +A+    V+ 
Sbjct: 267 LHFCI--RDFIQVNQPLNQKMVNKALEWLAITAEDRILDLFCGIGNFSLPIAQQAGFVVG 324

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           VE  +  V+ A+ N   + +NN+   + + ++ F       + FN+             +
Sbjct: 325 VEGVEEMVKQAKINQQTSGLNNIAFYQTNLAESFVDQHWATQPFNK-------------V 371

Query: 296 FVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
            +DP R G       ++   P  I+YISCNP +L RD   L    + I + A+ D FP+T
Sbjct: 372 LLDPARQGALFCLDHLMALTPERIIYISCNPATLMRDAEKLIRHGYKIAKSAVIDMFPHT 431

Query: 354 RHMECGVLLVR 364
            H+E   + ++
Sbjct: 432 GHLESISMFIK 442


>gi|304410535|ref|ZP_07392153.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS183]
 gi|307304628|ref|ZP_07584378.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           BA175]
 gi|304351019|gb|EFM15419.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS183]
 gi|306912030|gb|EFN42454.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           BA175]
          Length = 390

 Score =  194 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/383 (20%), Positives = 141/383 (36%), Gaps = 55/383 (14%)

Query: 12  QQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           QQ+A K   L Q++  F   N     L     +   +R +A+  +     +    +    
Sbjct: 32  QQVAVKTQTLLQLLAPFIPANSAELFLPPITGDDSGFRNKAKMVVLGAAHEPVLGIVSPS 91

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATI---------------RLEPLLRAKLFQIDYLT 111
            +    +D      LL  A M  ++  +               + +  L+  L     + 
Sbjct: 92  GEA---VDLC--DCLLYPADMQALLHRLTRFVQQAGLPPYRVDKAKGELKFILLTRSQVR 146

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRD---Y 166
            +     V L  H  ++   RE    L +   +      IQ +  A      L+ D   +
Sbjct: 147 GEYLLRFV-LRSHNGIERIERELPALLAEYPQIKVVSVNIQPVHMA-----ILEGDEEIF 200

Query: 167 VDE--RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           + E  RL      +       SF Q N  +   + +             L +L+CG G F
Sbjct: 201 LTENTRLEERFNHVPLFIRPKSFFQTNPQVAAQLYQTAREWVAEFSPRSLWDLFCGVGGF 260

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A     +  +EI   ++  A+ +     + NV+ + + S +F +            
Sbjct: 261 GLHCASKDITLTGIEIEAEAIACAQMSAQMMGLENVQFMALDSTDFAKGKSAAD------ 314

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                  +   I V+PPR G+ +A    +   A   ILY SCNP +L +DL  +   + +
Sbjct: 315 -------KPDLIIVNPPRRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHI-QGYHL 366

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
            ++ LFD FP+T H E  V+LV+
Sbjct: 367 TKVQLFDLFPHTDHFEVLVMLVK 389


>gi|269115232|ref|YP_003302995.1| hypothetical protein MHO_4570 [Mycoplasma hominis]
 gi|268322857|emb|CAX37592.1| Conserved hypothetical protein, putative RNAmethyltransferase
           [Mycoplasma hominis ATCC 23114]
          Length = 443

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 150/374 (40%), Gaps = 27/374 (7%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEP--IHYRMRAEFHIWHDGDDLYHI 61
           L++  YE QL  K + +  ++       N++  +  P  ++YR +   H+ +  +++Y  
Sbjct: 83  LMVLSYEDQLKFKQEIVNNLIKRNIGFQNIEQIQPSPKILNYRNKITLHVNYKNNNIYIG 142

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL-------TSQS 114
            + + + + +  +        ++    E+++ ++ + L +    +   L       ++ S
Sbjct: 143 FYKKNSNKLVIQNSLPLCHDELDKYYKELISALKQQILSKDNWIKELKLRKITLRHSNWS 202

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
               V  I        +      L   L      IQ      ++K      Y        
Sbjct: 203 HNIEVIFIIENPNKKGFDLLKNNLIFLLKPNVISIQ-CQYIKESKDIFTSLYKSMPQQFN 261

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDR 233
               I+    +SF Q N      +   +     +     ++++Y G G+  + +  +  +
Sbjct: 262 INNKIFNVNNDSFFQVNEEQTSLIYNQIKKFIDQENSTKIIDVYSGVGSIGISVCGNDSQ 321

Query: 234 VLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
           +  +EI K + E A+ NI  N +N   V I+  S+++F      E             + 
Sbjct: 322 LELIEINKSACECAKININQNLINPKLVDIINSSAQDFFNKKEAEY------------FE 369

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350
              +  DPPR+GL +  + M++    ++Y+SCNP ++ RDL       + IERL  +D F
Sbjct: 370 KSIVIFDPPRTGLTNKEINMLEKCNSVIYMSCNPHTMIRDLKYFEEKGYRIERLIPYDMF 429

Query: 351 PYTRHMECGVLLVR 364
           P T H+E   LL +
Sbjct: 430 PQTYHIEMLSLLKK 443


>gi|197251768|ref|YP_002145836.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|226725410|sp|B5F101|RUMB_SALA4 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|197215471|gb|ACH52868.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
          Length = 375

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 127/385 (32%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V             +R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPTGGPEQRFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCGCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LKVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+ LFD FP+T H E   LL R
Sbjct: 350 RIQRVQLFDMFPHTAHYEVLTLLCR 374


>gi|317491408|ref|ZP_07949844.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920955|gb|EFV42278.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 377

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 132/381 (34%), Gaps = 39/381 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y QQ+AEK  +L  +M    V   L    S    +R +A+  +    +    
Sbjct: 13  SCQWLEMPYPQQIAEKQQQLELLMSDLPVERWLPSVSSAEQAFRNKAKMVVSGSVERPLL 72

Query: 61  IMFDQQTKERMRID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
            M  +        +           F    + I    +      R    L+  L      
Sbjct: 73  GMLHRDGTAVDLCECPLYPQSFSAVFDVLKVFIARAGLTPYNVARKRGELKYLLLTESQK 132

Query: 111 TSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
            +Q     V     +L  L  A      +L   L      IQ +  A     T+I L   
Sbjct: 133 NNQLMLRFVLRSDAKLAQLRAALPWLQQQLPQ-LVVITANIQPVHMAILEGDTEIFLTEQ 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              E    +   +       SF Q N  +   +          +    + +L+CG G F 
Sbjct: 192 QALEE---SFNQVPLYIRPQSFFQTNPLVAASLYATARKWVHKLNISSMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EI+  ++  A  +     + NV+   + S  F  A            
Sbjct: 249 LHCATPEMKLTGIEISAEAIACATRSAQKIGLQNVQFSALDSTRFASA------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+       +   A  +ILY SCN  ++ +D++ L   + IE
Sbjct: 297 ---EGEVPELVLVNPPRRGIGAELCEYLGKMAPDYILYSSCNAQTMAQDIARLKN-YRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLV 363
           ++ LFD FP+T H E   LLV
Sbjct: 353 QVQLFDMFPHTAHYEVLTLLV 373


>gi|320105759|ref|YP_004181349.1| (Uracil-5)-methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319924280|gb|ADV81355.1| (Uracil-5)-methyltransferase [Terriglobus saanensis SP1PR4]
          Length = 450

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 152/394 (38%), Gaps = 48/394 (12%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDD 57
            G       YE+QL  K   LR M+    VP  +      +EP  YR R    +      
Sbjct: 74  GGCQYQQASYEEQLRIKETILRTMLERNGVPVPEKLQTHSAEPWGYRNRIRLRLDSFEGR 133

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                  + ++  M        + L+       +A+ +L P    ++      + Q+ Q 
Sbjct: 134 WRVGYVMRGSRVFMEARECPIAAPLLWRAAQAFVASSQLVPAQSREVEFFCDASEQTVQ- 192

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQI----------QLIGRANKTK-------- 159
            ++L  +  +++  RE   + R    A +  +          + +  + KT         
Sbjct: 193 -LSLSLNAAMEEMERESPKQFRKLCDAIRVSVPELSGAGLFVRPVTASTKTSKRGVPAEQ 251

Query: 160 ------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
                 +      +  ++   GR   +      F Q N  +   ++E  L   +G  G  
Sbjct: 252 AEEIEIVAWGEPKLLYKVDALGRKYTHAIARGGFFQVNRYLVQELVELALGERQG--GLA 309

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +L+ G G F+  L   F +V+AVE+A+ +  + R             V  SS +  +  
Sbjct: 310 WDLFAGAGLFTQALVDRFQQVIAVEVAERAFGSLR-----------DFVAHSSHQAVRET 358

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
                  R+    +   +   I VDPPR+GL +   G++       I+Y+SC+P++L RD
Sbjct: 359 CVGFLRKRVASTAMR--KPDLIVVDPPRAGLGEELCGLIAKVEAKEIVYVSCDPETLSRD 416

Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L  +L++ + +  L L D FP T HME   +L R
Sbjct: 417 LRKLLNSGYRLAELHLVDLFPQTYHMETVTVLQR 450


>gi|163856855|ref|YP_001631153.1| 23S rRNA 5-methyluridine methyltransferase [Bordetella petrii DSM
           12804]
 gi|163260583|emb|CAP42885.1| RNA methyltransferase [Bordetella petrii]
          Length = 458

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 134/385 (34%), Gaps = 37/385 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
              +   +   Q+A K   L            Q            YR RA   +      
Sbjct: 75  GCAMQHLEPSAQVAIKQRALEDTFWHVGKLRPQRVLPPLHGPTWGYRYRARLSVRVVPKK 134

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ + A I        ++ QI+       
Sbjct: 135 GGVLVGFHERKSSYVADMRECHVLPPHVSAMLMPLRAMIAAM-STPDRMPQIEVALGDQA 193

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---ERLT 172
             +V     R L+         LR        Q  L  +   T   L+ ++ D     + 
Sbjct: 194 TVLVL----RHLEPLTDGDLAVLRQFAAQHGVQWWLQPKGPDTVHPLEPEHADTLSYAMP 249

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
             G ++ YR     FTQ N  IN  M+   L       +  + +L+CG GNF+L LA   
Sbjct: 250 EFGLSMPYR--PTDFTQVNHAINRAMVSRALMLLDVQPEDRVADLFCGLGNFTLPLATRG 307

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              + VE +K   + A      + +    +   ++  E      R   +           
Sbjct: 308 REAVGVEGSKALTDRALAAADRHGLAGRTRFATLNLFEVDVDWLRGLGY----------- 356

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTIER 343
            F  + +DPPR G       +    P      I+Y+SCNP +L RD +I+     + ++ 
Sbjct: 357 -FDRMLIDPPREGAQAVAQALALLGPDERPRRIVYVSCNPATLARDAAIMVHEGGYVLKS 415

Query: 344 LALFDQFPYTRHMECGVLLVRKPSG 368
             + + FP+T H+E   +    P+G
Sbjct: 416 AGVINMFPHTGHVESIAVFESLPAG 440


>gi|254447150|ref|ZP_05060617.1| 23S rRNA (uracil-5-)-methyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263289|gb|EDY87567.1| 23S rRNA (uracil-5-)-methyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 452

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 137/375 (36%), Gaps = 28/375 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML------AFQVPNLQIFRSEPIHYRMRAEFHIWHDG 55
              L     + Q   K   L   +         +  +  +   + + YR RA    W D 
Sbjct: 94  GCDLQHLSPQAQTEHKRQSLLDTLARQANIRPHRCLDSAVLNRDGLGYRSRARLACWFDS 153

Query: 56  DDLYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
               +        +     I         IN L+  +   +  +  L+ +L  ID   ++
Sbjct: 154 RRQQYHLGFRRAGSHTIEPISQCPILVEPINRLIPHLRDALP-QWRLKKRLGHIDAFLNE 212

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           S       +  RL      +    + +   A+++ I L  R +     L  D  D    +
Sbjct: 213 SPSGPQVALCLRLNQAPLDDSKAVMLNF--AQQHNITLAWRDDHRVETLHGDS-DLTYYL 269

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD 232
               L        F+Q N G+N  M+   +       G  +L+ +CG GNFSL LA    
Sbjct: 270 LDGELKLSLGWGEFSQANRGLNREMVRTAVEQLHVPPGAHVLDAFCGVGNFSLALANGGA 329

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +VL +E +   VE AR+N   N     +   M+       +       R     IH    
Sbjct: 330 KVLGLEGSDNMVEKARHNARDNGFELCEFKTMN-------LMHSDGIGRHTLDGIHHA-- 380

Query: 293 KTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
               +DPPR G  +    + +      +LYISCNP +  RD   L +   T++ + L+D 
Sbjct: 381 ---LLDPPRDGASELCQRLAREPELQRVLYISCNPATFSRDAEHLVNGGFTLDTVQLWDL 437

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H E   L VR
Sbjct: 438 FPHTHHSEVMGLFVR 452


>gi|73995903|ref|XP_534759.2| PREDICTED: similar to HpaII tiny fragments locus 9C [Canis
           familiaris]
          Length = 667

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 133/421 (31%), Gaps = 76/421 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 220 PYAEQLERKRLECEQVLQKLAKEIGSTNRALLPWLLSQRHKHNKACCPLEGVRPSPQQTE 279

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 280 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPGATKQVVKAFQEFIRS 339

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL---------LDDAWRECAIRLRD 140
                           Q+   TS+  QA+  + +H           L  +  +  +    
Sbjct: 340 TPYSAYNPETYSGHWKQLTVRTSRRGQAMAIVYFHPQKLGPEELAGLKASLAQHFMAGPG 399

Query: 141 ALHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                     +     KT     + L+    D  +      L +R   ++F Q N     
Sbjct: 400 KATGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTLAAE 459

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +    +   G  +L++ CG G   L LA    RV+ +E+ + +VE AR N   N 
Sbjct: 460 VLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALAPRVKRVVGIELCQEAVEDARVNARDNE 519

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV+     +++   A+       +L              +DPPR+GL    +  V+  
Sbjct: 520 LSNVEFHCGRAEDLVPALVSRLASQQL-----------VAILDPPRAGLHSKVILAVRRA 568

Query: 316 ---PHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
                +LY+SCNP +   +   L                +    D FP T H E  +L  
Sbjct: 569 ENLKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGVPFRPVKAVAVDLFPQTPHCEMLILFE 628

Query: 364 R 364
           R
Sbjct: 629 R 629


>gi|323144161|ref|ZP_08078797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei
           YIT 12066]
 gi|322416069|gb|EFY06767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Succinatimonas hippei
           YIT 12066]
          Length = 447

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 142/360 (39%), Gaps = 24/360 (6%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           LA KV  L Q++    V   +    +  S  ++YR      I  D   +     + ++++
Sbjct: 101 LAYKVKGLYQLLKKSGVALNETPSFVVNSNALNYRRACRLAIRIDHGKVTVGFREGKSQK 160

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            + +      S  IN  + +++  +      +  L  ++++ S     I   +   L D 
Sbjct: 161 LVSLTTCKVLSERINVAIPKVVELLNKLQ-GKRNLGHLEFIDSDGALGIFLRVTENLSDA 219

Query: 130 AWRECAIRLRDALHARKYQI---QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
                    ++  +     I     I  + + K  L  D  ++ L +            +
Sbjct: 220 DLEIIGSFGKENSYVISVGIPYKHEIDSSEQIKEILLTDK-EDALFINASDCKIICKPTA 278

Query: 187 FTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  +++ VL A K   G  +L+L+CG GNF+L LA+    VL ++I    ++
Sbjct: 279 FVQVNKEVNKDLIKLVLDAVKPHPGMKVLDLFCGLGNFTLPLAKEGAEVLGIDIVSSMIK 338

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A+ N   N ++N K      ++              +       ++  + +DP R G  
Sbjct: 339 DAQKNAELNDLHNAKFAVADLED------------EFEKQQWAKVKYDAVVLDPGRMGAK 386

Query: 306 DATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
            A + + +   P I+ ISCNP +  RD+  L  + + I      D FP T H+E   +  
Sbjct: 387 RAALFVSKLKIPKIVMISCNPLAASRDIRELIKSGYKITAWGALDMFPRTSHIELMTVFS 446


>gi|227356755|ref|ZP_03841140.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC
           29906]
 gi|227163045|gb|EEI47980.1| 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 377

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 148/382 (38%), Gaps = 41/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y +Q+ +K   L  ++   +    L    S+ + +R +A+  +    +    
Sbjct: 13  SCEWLSLAYSEQINQKQHNLLDLLPKNYAFTQLAPVESQQVQFRNKAKMVVSGSVEKPIL 72

Query: 61  IMFDQQTKER--MRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            +   + +     +   +      +  ++   +A   L P      R +L  I    S+ 
Sbjct: 73  GLRKPEGEGVDLCQCPLYPASFEPVFPILKTFIAKAGLVPYNVERRRGELKFILLTESRH 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL-DR 164
           + +++     R       L  A      +L   L      IQ +  A    + +I L ++
Sbjct: 133 NHSMMLRFVLRSEKKLAQLRQALPWLQAQLPQ-LAVISVNIQPVHMAILEGEQEIVLTEK 191

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
            ++DE        +        F Q N  +   +        K +Q   L +L+CG+G F
Sbjct: 192 TFLDE----YFNEIPLHIRPKGFFQTNPDVAASLYATAGHWVKELQINRLWDLFCGSGGF 247

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A+    ++ +EI+  ++E AR +     + +V+   + S  F  A           
Sbjct: 248 GLHCAQKNTELIGIEISPEAIECARLSANELGLEHVEFQALDSTGFALA----------- 296

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTI 341
                    + + V+PPR G+ +     + +     ILY SCN  ++ +D+  LS  + I
Sbjct: 297 ----RESVPELVLVNPPRRGIGETLCDYLNSMKPRFILYSSCNAQTMAKDIQQLSH-YRI 351

Query: 342 ERLALFDQFPYTRHMECGVLLV 363
           +R+ LFD FP+T H E   LLV
Sbjct: 352 DRVQLFDMFPHTAHYEVLTLLV 373


>gi|160876725|ref|YP_001556041.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS195]
 gi|217974580|ref|YP_002359331.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS223]
 gi|189045737|sp|A9L1I5|RUMB_SHEB9 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|254766929|sp|B8E5Q5|RUMB_SHEB2 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|160862247|gb|ABX50781.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS195]
 gi|217499715|gb|ACK47908.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS223]
 gi|315268925|gb|ADT95778.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS678]
          Length = 390

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 140/383 (36%), Gaps = 55/383 (14%)

Query: 12  QQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           QQ+A K   L Q++  F   N     L     +   +R +A+  +     +    +    
Sbjct: 32  QQVAVKTQTLLQLLAPFIPANSAELFLPPITGDDSGFRNKAKMVVLGAAHEPVLGIVSPS 91

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATI---------------RLEPLLRAKLFQIDYLT 111
            +    +D      LL  A M  ++  +               + +  L+  L     + 
Sbjct: 92  GEA---VDLC--DCLLYPADMQALLHRLTRFVQQAGLPPYRVDKAKGELKFILLTRSQVR 146

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRD---Y 166
            +     V L  H  ++   RE    L +   +      IQ +  A      L+ D   +
Sbjct: 147 GEYLLRFV-LRSHNGIERIERELPALLAEYPQIKVVSVNIQPVHMA-----ILEGDEEIF 200

Query: 167 VDE--RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           + E  RL      +       SF Q N  +   + +             L +L+CG G F
Sbjct: 201 LTENTRLEERFNHVPLFIRPKSFFQTNPQVAAQLYQTAREWVAEFSPRSLWDLFCGVGGF 260

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A     +  +EI   ++  A+ +     + NV+ + + S +F +            
Sbjct: 261 GLHCASKDITLTGIEIEAEAIACAQMSAQMMGLENVQFMALDSTDFAKGKSAAD------ 314

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                  +   I V+PPR G+ +A    +   A   ILY SCNP +L +DL  +   + +
Sbjct: 315 -------KPDLIIVNPPRRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHI-QGYHL 366

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
            ++ LFD FP+T H E   +LV+
Sbjct: 367 TKVQLFDLFPHTDHFEVLAMLVK 389


>gi|307191668|gb|EFN75142.1| HpaII tiny fragments locus 9c protein [Harpegnathos saltator]
          Length = 576

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 142/430 (33%), Gaps = 86/430 (20%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ------------------------VPNLQIFRSE- 39
           L    YE QL  K   +R +++                              LQ   S  
Sbjct: 151 LWNMPYENQLEFKQKEMRSILIKIGQQMLKESRGLTDWINSQRKLYNGLPCELQNILSAN 210

Query: 40  -PIHYRMRAEFHIWHDGDDLYHIMFDQQ-------------TKERMRIDYFMPGSLLINA 85
               YR + EF I   G +   IM   +               +   I   M  ++ I  
Sbjct: 211 VTEAYRNKCEFTIGR-GSERNEIMIGFRLSSYTSGSTAVGPIDDLCHIPQNMKTAVKILE 269

Query: 86  LMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIRLRDAL 142
             I         P+  +    Q+   T+++   ++ +  H   L  D   +   +LR   
Sbjct: 270 TFICESDLEPFNPVDHSGYWRQVAARTTRAGHLMLIVGIHPQDLSGDELEKLRSQLRTFF 329

Query: 143 HARKY-----------QIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSF 187
              +             I   G   ++          +Y++E L      + +R    +F
Sbjct: 330 ETGEGAKACVTSLYFQTIDKKGIGGESNDTLYHVSGTEYIEETLL----GMKFRVSPQAF 385

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N      + + V+   +      LL++ CG G   L  ++H   VL +E+   +++ 
Sbjct: 386 FQVNTLGAEVLYKAVIDLAESTTDTALLDVCCGTGTIGLCFSKHCGEVLGIEVIPDAIKD 445

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N   N V N +     +++                I   +    T  VDPPR+GL  
Sbjct: 446 AKENAIKNGVTNCEFFVGKAEDILS-----------PVIQRATRSNITAVVDPPRAGLHQ 494

Query: 307 ATVGMVQAYP---HILYISCNPDSLCRDL---------SILSTTHTIERLALFDQFPYTR 354
             +  ++       ++YISC+P +  ++L           L       +    D FP+T+
Sbjct: 495 KALLTLRKVKKLSRLVYISCDPRAAMKNLVDLARPSSKQYLGEPLVPVKAIAVDMFPHTK 554

Query: 355 HMECGVLLVR 364
           H E  + L R
Sbjct: 555 HCELILCLER 564


>gi|260833806|ref|XP_002611903.1| hypothetical protein BRAFLDRAFT_106799 [Branchiostoma floridae]
 gi|229297275|gb|EEN67912.1| hypothetical protein BRAFLDRAFT_106799 [Branchiostoma floridae]
          Length = 650

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 147/427 (34%), Gaps = 83/427 (19%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPI--H 42
            YE+QL +K +  + ++                               L+     PI  +
Sbjct: 238 PYEEQLKQKTESQKVVLGKLSRAIENVNPGLGSWVVQQRKQYDNMCCKLEDITPSPILNN 297

Query: 43  YRMRAEFHIW--HDGDDLYHIMFDQQTKE-------RMRIDYFMPGSLLINALMIEMMAT 93
           YR + EF+I    +G +        + K                  +  +  +    +  
Sbjct: 298 YRNKNEFNIGISPEGKEKTIGFRLGRYKGGSCTVVSPYDCPNLPDTAKDMVRIFQTYLEQ 357

Query: 94  IRLEPL----LRAKLFQIDYLTSQSDQAIVTL-IYHRLLDDAWRECAIRLRDALHARKY- 147
                      +    Q+   T+Q  + +V +    + L +   E   +L     +    
Sbjct: 358 STRSGYDTEKHQGHWKQLTVRTTQGSEVMVMVQFNVQDLSEEEIEKEKQLLKDYFSTGPG 417

Query: 148 ----QIQLIGRANKT----------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                  L  +A+K           ++ L ++ + E+L      + +R   ++F Q N  
Sbjct: 418 KDCGITSLFFQAHKQRRPGDEEASYQLLLGKEVIQEKLL----GMTFRISPDAFFQVNTL 473

Query: 194 INVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
               +   V           +L++ CG G   L LA+H  +V+ VE+ + +VE A+ N  
Sbjct: 474 AAEVLYSKVADWCDFTKDSTVLDVCCGTGTIGLTLAKHVKKVIGVELCQQAVEDAKVNAN 533

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N ++N + +   +++    + R     RL   D+         VDPPR+GL    + ++
Sbjct: 534 INGIDNAEFLCGKAEDILPDLVR-----RLYGTDL------VAVVDPPRAGLHTRVISVL 582

Query: 313 QAYP---HILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGV 360
           +       ++Y+SCN  S   +   L                R    D FP+TRH E  +
Sbjct: 583 RKCSNLTKLVYVSCNSQSAMPNFIDLCRPTSNKFKGAAFRPVRAVPVDLFPHTRHSELII 642

Query: 361 LLVRKPS 367
              R  S
Sbjct: 643 QFDRTQS 649


>gi|322788773|gb|EFZ14341.1| hypothetical protein SINV_01191 [Solenopsis invicta]
          Length = 559

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 146/419 (34%), Gaps = 77/419 (18%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL---------------QIFRSEP--------- 40
           L    Y  QL  K   +R +++      L               +++   P         
Sbjct: 150 LWNMPYLDQLEFKQKEMRSILIKIGQKMLTESKYSLTEWINSQKKLYDGLPCKLQNILSV 209

Query: 41  ---IHYRMRAEFHIWHDGDDLYHIM------FDQQTKERMRID------YFMPGSLLINA 85
                YR + EF +  D +    I+      +   +     ID        M  ++ I  
Sbjct: 210 DVTEAYRNKCEFTVGKDSEQSKIIIGFRLSTYASGSTAVGPIDDLCHIPENMKIAVKILE 269

Query: 86  LMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA 144
             I         P+  +    Q+    ++++  ++ +  H    D       +L+  L  
Sbjct: 270 TFICESNLEPFNPVDHSGYWRQVTARVTRANHLMLIIGIHPQ--DLNTVELEKLKSELRT 327

Query: 145 RKYQIQLIGRANKTKICL------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
             ++     +A+ T +          +Y++E L      + +R    +F Q N      +
Sbjct: 328 -FFETGEGAQAHVTSLYFQTIDKNGTEYIEETLL----GMKFRISPQAFFQVNTLGAEVL 382

Query: 199 LEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
            +  +  A   +   LL++ CG G   L  ++H   VL V+I   +++ A+ N   N++ 
Sbjct: 383 YKAAIDLAEPTLDTALLDVCCGTGTIGLCFSKHCGEVLGVDIIPDAIKDAKENAIKNNIK 442

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316
           N +     +++             L  I   +       VDPPR+GL    +  ++    
Sbjct: 443 NCEFFVGKAEDIL-----------LPVIYRTTKSNIIAIVDPPRAGLHQKALLTLRKSKK 491

Query: 317 --HILYISCNPDSLCRDL---------SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
              ++YISC+P +  ++L           L       +    D FP+T+H E  + L R
Sbjct: 492 LDRLVYISCDPHAATKNLIDLARPSSKQYLGDPLVPVKAIAVDMFPHTKHCELILCLER 550


>gi|317403057|gb|EFV83592.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Achromobacter
           xylosoxidans C54]
          Length = 501

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 126/380 (33%), Gaps = 37/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
              +   +   Q+A K   L                         YR RA   +      
Sbjct: 75  GCAMQHLEPSTQVAIKQRSLEDTFWHVGKLRPARILAPLHGPTWGYRYRARLSVRVVPKK 134

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++ L++ + A I        +L Q++       
Sbjct: 135 GGVLVGFHERKSSYVADMRECHVLPRHVSDLLMPLRAMI-ASMSAPDRLPQVEVSLGDGV 193

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLT 172
            A+V     R L          LR        Q  L  +   T   L    RD +   + 
Sbjct: 194 TALVL----RHLLPLTDHDIAVLRAFADKHDVQWWLQPKGPDTVHPLVPEHRDALTYTMP 249

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF 231
             G  + YR     FTQ N  IN  M+   L          + +L+CG GNF+L LA   
Sbjct: 250 EFGLRMPYR--PTDFTQVNHAINRAMVSRALQLLEVQPTDRVADLFCGLGNFTLPLATQG 307

Query: 232 DRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              + VE +K   + A    A + +        ++  E      R   F           
Sbjct: 308 REAVGVEGSKALTDRAHEAAARHGLGERTSFATLNLFEVDVEWLRGLGF----------- 356

Query: 291 RFKTIFVDPPRSGLDDATVGMVQA-----YPHILYISCNPDSLCRDLSIL--STTHTIER 343
            F  + +DPPR G       + Q         I+Y+SCNP +L RD +I+     + ++ 
Sbjct: 357 -FDRMLIDPPREGAQAVAQALSQLKAEERPRRIVYVSCNPATLARDAAIMVHEGGYLLKS 415

Query: 344 LALFDQFPYTRHMECGVLLV 363
             + + FP+T H+E   +  
Sbjct: 416 AGVINMFPHTGHVESIAVFE 435


>gi|91218041|ref|ZP_01254992.1| putative RNA methyltransferase [Psychroflexus torquis ATCC 700755]
 gi|91183788|gb|EAS70180.1| putative RNA methyltransferase [Psychroflexus torquis ATCC 700755]
          Length = 184

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 16/194 (8%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR 233
             L ++    SF Q N+      L  +  +   + G+  + +LY G G  +  +A+    
Sbjct: 2   EGLKFKINAKSFYQTNSEQAYE-LYKITRSFANLTGEELVYDLYTGTGTIAQFVAKKAKH 60

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ +E    ++E A+ N   N + N        K+   +           +      +  
Sbjct: 61  VVGIESVLEAIEDAKSNAKLNGIENTSFFAGDMKKLFNS-----------EFIEKHGQPD 109

Query: 294 TIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            I  DPPR G+    +  +       I+Y+SCN  +  RDL ++   + ++     D FP
Sbjct: 110 VIITDPPRDGMHKDVIQQILNVKPKRIVYVSCNSATQARDLELMDEFYKVDESQAVDMFP 169

Query: 352 YTRHMECGVLLVRK 365
            T H+E  V L  +
Sbjct: 170 QTHHVENVVCLSLR 183


>gi|197284573|ref|YP_002150445.1| 23S rRNA methyluridine methyltransferase [Proteus mirabilis HI4320]
 gi|194682060|emb|CAR41582.1| putative 23S rRNA (uracil-5-)-methyltransferase [Proteus mirabilis
           HI4320]
          Length = 377

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/382 (20%), Positives = 147/382 (38%), Gaps = 41/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   L   Y +Q+ +K   L  ++   +    L    S+ + +R +A+  +    +    
Sbjct: 13  SCGWLSLAYSEQINQKQHNLLDLLPKNYAFTQLAPVESQQVKFRNKAKMVVSGSVEKPIL 72

Query: 61  IMFDQQTKER--MRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            +   + +     +   +      +  ++   +A   L P      R +L  I    S+ 
Sbjct: 73  GLRKPEGEGVDLCQCPLYPASFEPVFPILKTFIAKAGLVPYNVERRRGELKFILLTESRH 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL-DR 164
           + +++     R       L  A      +L   L      IQ +  A    + +I L ++
Sbjct: 133 NHSMMLRFVLRSEKKLAQLRQALPWLQAQLPQ-LAVISVNIQPVHMAILEGEQEIVLTEK 191

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
            ++DE        +        F Q N  +   +        K +Q   L +L+CG+G F
Sbjct: 192 TFLDE----YFNEIPLHIRPKGFFQTNPDVAASLYATAGHWVKELQINRLWDLFCGSGGF 247

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A+    +  +EI+  ++E AR +     + +V+   + S  F  A           
Sbjct: 248 GLHCAQKNTELTGIEISPEAIECARLSANELGLEHVEFQALDSTGFALA----------- 296

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTI 341
                    + + V+PPR G+ +     + +     ILY SCN  ++ +D+  LS  + I
Sbjct: 297 ----KESVPELVLVNPPRRGIGETLCDYLNSMKPRFILYSSCNAQTMAKDIQQLSH-YRI 351

Query: 342 ERLALFDQFPYTRHMECGVLLV 363
           +R+ LFD FP+T H E   LLV
Sbjct: 352 DRVQLFDMFPHTAHYEVLTLLV 373


>gi|119717975|ref|YP_924940.1| 23S rRNA methyluridine methyltransferase [Nocardioides sp. JS614]
 gi|119538636|gb|ABL83253.1| 23S rRNA m(5)U-747 methyltransferase [Nocardioides sp. JS614]
          Length = 379

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 132/383 (34%), Gaps = 37/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-----FQVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
           S T L   Y  QL  K   + +++            L    S  +  R +A+  +     
Sbjct: 13  SCTWLGTAYAAQLGAKQHTVEELLARSVGAAGATAWLPPVASAQLGVRNKAKMVVSGTLA 72

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
           +    + +      + +      +  I A +  +   +    L        R +L  +  
Sbjct: 73  EPTLGILNPAG-AGVDLRDCPLHTPGIQAALPVLADFVTRAALAPYDLATRRGELKYLLV 131

Query: 110 LTSQSDQAIVTLIYHRLLDDA-WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV- 167
             S   + +V  +       A  R+    L + L         +   +K  +  +R+ V 
Sbjct: 132 TESPDGELMVRFVLRSQEPVARIRKHLPALLERLPQVAVATVNLQPEHKAVLEGEREIVL 191

Query: 168 --DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFS 224
              E L +    L       SF Q N  +   +     A T  +  G + +LYCG G F+
Sbjct: 192 TEQESLLMQVGGLGLHLRPQSFFQTNTAMAAELYRLARAWTAELAPGRVWDLYCGVGGFA 251

Query: 225 LVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           L +A      V  VE++  ++ +A  +     ++ V+     +                 
Sbjct: 252 LAIASTAHAEVTGVEVSGEAIASATASAREAGLDRVRFEAGDAT---------------A 296

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
            +         + V+PPR GL     G ++     H+LY SCN  +L RDL  + +    
Sbjct: 297 WVSDRPDVPDLVVVNPPRRGLGPELSGWLEDSGVRHVLYSSCNAHTLARDLDAMPSL-RP 355

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
            R  L D FP T H E   LL R
Sbjct: 356 VRAQLLDMFPNTAHYEVLALLER 378


>gi|156846955|ref|XP_001646363.1| hypothetical protein Kpol_2001p6 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156117039|gb|EDO18505.1| hypothetical protein Kpol_2001p6 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 589

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 79/405 (19%), Positives = 142/405 (35%), Gaps = 61/405 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV----------PNLQIFRSEPIHYRMRA--EF 49
                   YEQQL  K + +      F                I     + YR +    F
Sbjct: 203 GCQFQFLTYEQQLNLKKNTVINAYKFFAPKLLAENLIPTVGETIGSPLKLGYRTKLTPHF 262

Query: 50  HIWHDGDD-----------------LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA 92
            +                           + +  +   + I+  + G+ +IN  M     
Sbjct: 263 DVPRKVKQLEEKPPLGFGQKGRPKWRSQTLAEGGSGSILDIEECVIGTSIINEGMCNERK 322

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
               E   + K      L   +         +  LD+   +     + +    + +    
Sbjct: 323 RFDKE-FTKYKKGATILLRENTTILDTEKPVYEQLDEGSTDIDKEDKISYVEVEDKEHDK 381

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
             A KT +   R  V E +        +      F Q N  I   + ++V    +    D
Sbjct: 382 KLA-KTCVTNTRQIVKEYV----DGYTFEFSAGEFFQNNNSILPAVTKYVRDNLQLPNSD 436

Query: 213 -----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                L++ YCG+G FS+  ++  D+V+ VEI+  SV  A  N   N ++N + +   ++
Sbjct: 437 TLPRYLVDCYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKNNGIDNCRFIVGKAE 496

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNP 325
           +  +++   ++               ++ +DPPR G D+  +  + +Y    I+YISCN 
Sbjct: 497 KLFESIDVPKDR-------------TSVILDPPRKGCDELFLTQLSSYFPAKIVYISCNV 543

Query: 326 DSLCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
            S  RD+          + + IE L  FD FP T H+E   +L R
Sbjct: 544 HSQARDVEFFLKNTENGSHYKIESLRGFDFFPQTHHVESVCVLSR 588


>gi|66800597|ref|XP_629224.1| hypothetical protein DDB_G0293244 [Dictyostelium discoideum AX4]
 gi|60462618|gb|EAL60821.1| hypothetical protein DDB_G0293244 [Dictyostelium discoideum AX4]
          Length = 646

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/431 (19%), Positives = 157/431 (36%), Gaps = 77/431 (17%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQ----------VPNL-----------------QI 35
                  YE+QL +K +++ ++M+  +          +P                   +I
Sbjct: 164 CPWYNIPYEEQLKKKKNQIEKVMINIKSTTRKESLHNLPEWLVKRDKTKEEKMCCGLEEI 223

Query: 36  FRSE-PIHYRMRAEFHIWHDGDDLYHIMFD-QQTKERMRIDYFMPGSLLINALMIE---M 90
             S    +YR +A++ I +D D+   + F   +T   + I      + LI+    E   +
Sbjct: 224 VPSPVTENYRNKAQYTIGYDADNKPCVGFALGRTGNGITIVADPSNAPLISKRSNEIRRL 283

Query: 91  MATIRLEPLL--RAKLFQIDYLTS----------QSDQAIVTL-IYHRLLDDAWRECAIR 137
                 EP L    K F  +  +            + + + T+   H+ L     E    
Sbjct: 284 FNEYITEPNLGSNRKPFDKNSHSGFWRQLTVRDFTTGETMATVQFNHKGLTAEELETEKN 343

Query: 138 --------LRDALHARKYQIQLI-GRANKTKICLDRDYVD--ERLTVAGRTLIYRQIENS 186
                   L +        IQL  G +N   + L  + +D  E +        +R   N+
Sbjct: 344 NLKNYFASLPEEQRITSLSIQLYDGISNSAPVDLAVETIDGPEFIHENLLGCQFRVSANA 403

Query: 187 FTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N      +   VL          LL++ CG G     +++   +V+ +EI+  +V 
Sbjct: 404 FFQINTKATELLYSKVLDWAQVSQDTTLLDICCGTGTIGQCISKKVKKVIGLEISPDAVI 463

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            +  N   N ++N + +   +++    +    + N  KD +          VDPPR GL 
Sbjct: 464 DSINNAKLNKIDNAEYLVGKAEDTLPTLL--TKSNGGKDQEFIG------IVDPPRGGLH 515

Query: 306 DATVGMVQAYPHI---LYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYT 353
              +  ++ +  I   +Y+SCN +SL  D + L                +   FD FP+T
Sbjct: 516 GDVLKAIRTFEPIKKLVYVSCNQNSLIPDAAKLCKGISKTMKGTPFVPTKAIAFDLFPHT 575

Query: 354 RHMECGVLLVR 364
             +E  VL  R
Sbjct: 576 DLVELVVLFER 586


>gi|89901550|ref|YP_524021.1| 23S rRNA 5-methyluridine methyltransferase [Rhodoferax
           ferrireducens T118]
 gi|122478810|sp|Q21UR3|RUMA_RHOFD RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|89346287|gb|ABD70490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodoferax
           ferrireducens T118]
          Length = 477

 Score =  193 bits (490), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 129/391 (32%), Gaps = 38/391 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIW--HDG 55
              +       Q+A K   L   +           L+        YR RA   +      
Sbjct: 91  GCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKADTILRPIEGPAWGYRYRARLSVRYVRKK 150

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +L     ++++     +         ++ L++ + A I     +     QI+     S 
Sbjct: 151 GELLIGFHERKSGYVADMKECPVLPPHVSDLLLPLRALISAMEAMETC-PQIELACGDSV 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A+V L +   L                  ++ +Q  G      +      +   L   G
Sbjct: 210 TALV-LRHMEPLTHGDLALLRGFAAQHAGVQWWLQPNGPETAHLLDEGGQALSYDLPEFG 268

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             + ++     FTQ N  IN  ++   L      + + +++ +CG GNF+L +A     V
Sbjct: 269 IHMPFK--PTDFTQVNPHINRVLVSRALRLLDAKRHERVIDWFCGLGNFTLPIATQAREV 326

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L VE ++  V  +R N   N         +++  F         F    ++ I       
Sbjct: 327 LGVEGSEALVARSRQNFKLNQALAPVNKSLAATNFV----ARNLFEMTPELLIQDGAADK 382

Query: 295 IFVDPPRSGLDDATVGMVQAY---------------------PHILYISCNPDSLCRDLS 333
             VDPPR G       + + +                       I+Y+SCNP +L RD  
Sbjct: 383 WLVDPPREGAVSLVQALAELHQQKLDPIGHPPIVGAVGWMPPKRIVYVSCNPSTLARDAD 442

Query: 334 IL--STTHTIERLALFDQFPYTRHMECGVLL 362
           +L     +      + + FP+T H+E   + 
Sbjct: 443 LLVHQAGYRCSFAGVVNMFPHTAHVESMAVF 473


>gi|119174350|ref|XP_001239536.1| hypothetical protein CIMG_09157 [Coccidioides immitis RS]
          Length = 531

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 82/403 (20%), Positives = 148/403 (36%), Gaps = 69/403 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQM------MLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG 55
                +  YE QL  K   + +       + + QVP ++     P+ Y  R +    H  
Sbjct: 153 GCQFQMLPYEDQLKHKKRIIEKAYINFSGLNSVQVPGIEETMGSPLQYGYRTKLT-PHFS 211

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                        E + I + M G   +  +    + T  +   L+ +  ++     Q  
Sbjct: 212 LPGRVKKAAHNLTEPLNIGFMMKGRRKVMDIEDCPLGTDIVRVGLKNERQRVLDSLHQFK 271

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTV- 173
                L+         RE   R+       + +I+      K  I +D  DY++E+  + 
Sbjct: 272 AGATLLV---------RENTRRIP------RDKIEENATEKKDVIRIDHPDYIEEKSYIT 316

Query: 174 --------AGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD------LLE 215
                        ++R +  +F Q N  I      ++ E  L A+            LL+
Sbjct: 317 DQKGISSEYIDDYLFRNVAGTFFQNNNSILSPFTQYVRERALPASADSDPSKPKLKYLLD 376

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG+G F++ L+  F   L V++A  S+E+AR N   N + N       + +  Q +  
Sbjct: 377 AYCGSGLFTIALSTVFRSSLGVDVAAGSIESARENARLNKLKNTGFAAADAAKLFQDVPY 436

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333
             +                + +DPPR G D   +  + A+    ++Y+SCN  +  RD+ 
Sbjct: 437 PPD-------------QTLLVIDPPRKGCDTNFLKQLLAFGPARVVYVSCNVHTQARDVG 483

Query: 334 ILSTT------------HTIERLALFDQFPYTRHMECGVLLVR 364
           ++               + IE +  FD FP T H+E   +L R
Sbjct: 484 VMVRGDTGDGSGKSSVRYEIESIKGFDFFPQTGHVESVAVLNR 526


>gi|302768729|ref|XP_002967784.1| hypothetical protein SELMODRAFT_440228 [Selaginella moellendorffii]
 gi|300164522|gb|EFJ31131.1| hypothetical protein SELMODRAFT_440228 [Selaginella moellendorffii]
          Length = 650

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 89/482 (18%), Positives = 143/482 (29%), Gaps = 126/482 (26%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF----------QVPNLQ-----------------IFR 37
           L    YE+QL EK D +  ++  F            P  +                 I  
Sbjct: 157 LASQSYEEQLREKRDGVATVLRKFVRHTRKCCVHGTPVPEWLTPGKEKGGMACDFEGIIA 216

Query: 38  SEP-IHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMMATI 94
           S     YR + EF I    D    + F      K    I          N   I      
Sbjct: 217 SPVVEGYRNKCEFSIGSSADGESVVGFQMGMFRKGITAIGNPRNCR---NVSDIAKFYAG 273

Query: 95  RLEPLLRAKLFQI----------DYLTSQSDQA----------------IVTLIYHRLLD 128
            LE  +R   FQ+            LT +  +                 +V +    + +
Sbjct: 274 ALESFIRTSEFQVWNKENNSGFWRMLTVREGRHPRTCEEKVPTVAEVMLVVQVSPSGIAN 333

Query: 129 DAWRECAIRLRDALHARKYQ-----------------IQLIGRANKTKICL---DRDYVD 168
           DA  +   R+   L +  +                  +     A+   I L     +   
Sbjct: 334 DAKMKEYERMARELSSAAFSASPPVTLTALLVQEHVGVSNAAPADAPLISLAIPGTEVSV 393

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVL 227
           + +      L +R    +F Q N+     +              LL ++ CG G   L L
Sbjct: 394 QHIHDYIGDLQFRISPTAFFQVNSFAAEKLYALAGEWAGLGPNTLLFDICCGTGTIGLTL 453

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF-------N 280
           AR    V+ +EI   +V  A  N   N ++N + V   +++    +  E E        +
Sbjct: 454 ARKVGMVVGIEINADAVTDALTNAKLNDISNCRFVCAKAEDVVNKLLNEYEVLPEESSED 513

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILS- 336
              D D   +    + VDPPRSGL       ++ +     ++Y+SCNPD+L  +   L  
Sbjct: 514 NAMDTDKKRFSNVVVIVDPPRSGLHPTVTKALRVHSRLKRLVYVSCNPDTLIANSIELCA 573

Query: 337 -----------------------------------TTHTIERLALFDQFPYTRHMECGVL 361
                                                    +    D FP+T H E  +L
Sbjct: 574 PSSTADKQKNGRGMNIKGMSSMGYARQRMKNMPNSEPFKPVKAVAVDLFPHTHHCEMVML 633

Query: 362 LV 363
           L 
Sbjct: 634 LQ 635


>gi|126173113|ref|YP_001049262.1| 23S rRNA methyluridine methyltransferase [Shewanella baltica OS155]
 gi|167012644|sp|A3D0Y0|RUMB_SHEB5 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|125996318|gb|ABN60393.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella baltica
           OS155]
          Length = 390

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 142/383 (37%), Gaps = 55/383 (14%)

Query: 12  QQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           QQ+A K   L+Q++  F   N     L     +   +R +A+  +     +    +    
Sbjct: 32  QQVAVKTQTLQQLLAPFIPANSAELFLPPITGDDSGFRNKAKMVVLGAAHEPVLGIVGPS 91

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATI---------------RLEPLLRAKLFQIDYLT 111
            +    +D      LL  A M  ++  +               + +  L+  L     + 
Sbjct: 92  GEA---VDLC--DCLLYPADMQALLHRLTRFVQQAGLPPYRVDKAKGELKFILLTRSQVR 146

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRD---Y 166
            +     V L  H  ++   RE    L +   +      IQ I  A      L+ D   +
Sbjct: 147 GEYLLRFV-LRSHNGIERIERELPALLAEYPQIKVVSVNIQPIHMA-----ILEGDEEIF 200

Query: 167 VDE--RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           + E  RL      +       SF Q N  +   + +             L +L+CG G F
Sbjct: 201 LTENTRLEERFNHVPLFIRPKSFFQTNPQVAAQLYQTAREWVAEFSPRSLWDLFCGVGGF 260

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L  A +   +  +EI   ++  A+ +     + NV+ + + S +F +            
Sbjct: 261 GLHCASNDITLTGIEIEAEAIACAQMSAQMMGLENVQFMALDSTDFAKGKSAAD------ 314

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                  +   I V+PPR G+ +A    +   A   ILY SCNP +L +DL  +   + +
Sbjct: 315 -------KPDLIIVNPPRRGIGEALCQSLSEFAPKAILYSSCNPKTLAKDLEHI-QGYHL 366

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
            ++ LFD FP++ H E   +LV+
Sbjct: 367 TKVQLFDLFPHSDHFEVLAMLVK 389


>gi|255716342|ref|XP_002554452.1| KLTH0F05676p [Lachancea thermotolerans]
 gi|238935835|emb|CAR24015.1| KLTH0F05676p [Lachancea thermotolerans]
          Length = 597

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 81/409 (19%), Positives = 139/409 (33%), Gaps = 74/409 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----------IFRSEPIHYRMRA---- 47
                   YE+QL  K + +      F    L+          +   +   YR +     
Sbjct: 216 GCQFQFLPYEEQLNLKRETVANAYKYFAPRLLENGLLPKIGETVASPKIFDYRTKLTPHF 275

Query: 48  -------------EFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI 94
                               G   +  +    ++  + I+  + G+ ++N  M       
Sbjct: 276 DMPKKVHKLEERPPLGFGQKGRPTWRNIDAGGSRSILDIEECVIGTKILNEGME------ 329

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                   K F+ D+   +    I+     R+LD            +++    +   +  
Sbjct: 330 -----NERKKFERDFKGYKRGATILLRENTRVLDSQKPVEEQLGDGSVNPDTGKTSFLEV 384

Query: 155 AN-----KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA---- 205
                  KT +   R  V E +        +      F Q N  I   + E+V +     
Sbjct: 385 TEDKPLAKTCVTNSRQVVTEYI----NGYTFEFSAGEFFQNNNSILPKVTEYVCSNLQIP 440

Query: 206 --TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                    L++ YCG+G FS+  ++  D+V+ VE++  SV  A  N  AN V N K V 
Sbjct: 441 GSKPEDPHYLVDAYCGSGLFSITASKGVDKVIGVEVSADSVSFAEANAKANGVENCKFVV 500

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYI 321
             ++    ++                    ++ +DPPR G DD  +  +  Y    I+YI
Sbjct: 501 GKAECIFASID-------------TPCDRTSVILDPPRKGCDDIFLKQLSEYNPARIVYI 547

Query: 322 SCNPDSLCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           SCN  S  RD+            + +E L  FD FP T H+E   +L R
Sbjct: 548 SCNVHSQARDMQYFLQETEKGKQYKVESLRGFDFFPQTHHVESVCVLTR 596


>gi|315182546|gb|ADT89459.1| 23S rRNA metyluridine methyltransferase [Vibrio furnissii NCTC
           11218]
          Length = 377

 Score =  192 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 139/382 (36%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S T     Y  Q+  K ++L+ ++        L   RS+   +R +A+  +         
Sbjct: 13  SCTHCATPYASQVEIKDNQLKALLTNLAPQQWLAPMRSQETAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAK----LFQIDYLTSQ 113
            +  Q     + +         +  +   + + +    + P  +AK    L  I    S+
Sbjct: 73  GIESQLDGAALSLTQCPLYPAPTQALLEYLQQWIRIAGIPPYNKAKKKGELKFILLTRSE 132

Query: 114 SDQAIVTLIYHR--LLDDAWRECAIRLRDALHA---RKYQIQLIGRAN---KTKICLDRD 165
            +   +     R   +          L  A  A       IQ +  A    + +I L   
Sbjct: 133 HNGQFMLRFVSRSTAVLPRIERNLPALLAAFPAIEVVSVNIQPVHMARLEGEEEIFLTDT 192

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS 224
            V   L      +       SF Q N  +   +        + +    + +L+CG G F+
Sbjct: 193 QV---LMEQFNDVPMVIRPKSFFQTNPQVASSLYATARQWVRELAPAHMWDLFCGVGGFA 249

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     V  +EI   ++ +A+ + +A  ++N+    + S +F+              
Sbjct: 250 LHCASPSTAVTGIEIEPEAIASAKRSASAMGIDNLSFAALDSAQFSLG------------ 297

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR GL DA    +   A  HI+Y SCNP ++  D+  L+  +   
Sbjct: 298 ---QDVAPDLVLVNPPRRGLGDALTQQLAMLAPKHIIYSSCNPLTMKNDVEQLTE-YRAV 353

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           +L  FD FP+T H E  +LL R
Sbjct: 354 KLQWFDMFPHTDHAEVLLLLER 375


>gi|330443892|ref|YP_004376878.1| tRNA (Uracil-5-)-methyltransferase [Chlamydophila pecorum E58]
 gi|328807002|gb|AEB41175.1| tRNA (Uracil-5-)-methyltransferase [Chlamydophila pecorum E58]
          Length = 396

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 144/393 (36%), Gaps = 42/393 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIW--HDGDDL 58
             +     Y   L  K   L+++  +       +    P +  R + EF  +   D    
Sbjct: 12  GCSSPQTAYSTFLKAKELLLQELFSSLISEIRPVIPCTPILRGRNKMEFSFFQSRDQQKS 71

Query: 59  YHIMFDQQTKERMRIDYFM---PGSLLINALMIEMMA-----TIRLEPLLRAKLFQIDYL 110
             +M   + ++ ++I   +     ++ I  L           T    P  R  L  +   
Sbjct: 72  LGLMSSSKPRQGIQITECLLTQEDTMEILRLTRLWWERHVYLTAYFPPKNRGCLCTLTIR 131

Query: 111 TSQSDQAIVTLIYHRLLDD--AWRECAIRLRDALHARKYQIQLIGRANK----------- 157
                + I+ ++      +     E     +  L      I  I    K           
Sbjct: 132 YGYPKKEIMVILTTSGAPEYTISPEALEDWKQTLLGSSLNISSIFWEEKHSTPGLPTQYL 191

Query: 158 TKICLDRDYVDERLTVAGRT--LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214
             +     Y+ + LT+        +     SF QP       +++ V         + LL
Sbjct: 192 QTLLYGEPYIQQTLTLPSDGSSATFNIRPKSFFQPQTLQAARIIDTVKEFINPQGTEILL 251

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +LYCG G   ++LA +  +V+ VE    ++ +AR NI  NH  N   V +   E T+   
Sbjct: 252 DLYCGVGTLGIMLAPYVQKVIGVENVPEAILSARENILINHQENRMEVFL---EDTKTFC 308

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS-LCRD 331
           ++  +    DI         I VDPPR GL +  +  +     P ++YISCNP +     
Sbjct: 309 KKLPYTCPPDI---------IIVDPPRCGLQNKALKHILKIGAPKLVYISCNPRTQFQEC 359

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             ++   ++I+ +   DQFP++ H+E  +LL R
Sbjct: 360 FQLIHAGYSIKAMQPIDQFPHSPHLENILLLER 392


>gi|114048697|ref|YP_739247.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. MR-7]
 gi|122944423|sp|Q0HRR5|RUMB_SHESR RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|113890139|gb|ABI44190.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp. MR-7]
          Length = 384

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 129/376 (34%), Gaps = 42/376 (11%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           QQLA K   L+Q++  F       F          +R +A+  +          +     
Sbjct: 27  QQLAAKTQELQQLLAPFVDNAEAQFLPPVVGDSSGFRNKAKMVVLGAAHAPVLGIVSPSG 86

Query: 68  KERMRIDYFM-PGSLL---------INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +     D  + P  +          +    I      + +  L+  L     +  +    
Sbjct: 87  EAVSLCDCLLYPADMQALLHRLERFVQQAGIPPYRVDKAKGELKFILLTRSQVRGEYMLR 146

Query: 118 IVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            V           R L     E        +      I +     + +I L  +    RL
Sbjct: 147 FVLRSRDAIARIERELPALMAEYPQI--KVVSVNLQPIHMAILEGEEEIFLTENT---RL 201

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH 230
                 +       SF Q N  +   + +             L +L+CG G F L  A  
Sbjct: 202 EERFNDVPLFIRPKSFFQTNPQVAAKLYQTAREWVADFAPASLWDLFCGVGGFGLHCAAK 261

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              +  +EI   ++  A+ +     ++ V+ + + S +F +              D    
Sbjct: 262 DIPLTGIEIEAEAIACAKMSAQLMGLDKVQFMALDSTDFAKG-------------DAAQT 308

Query: 291 RFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348
           + + I V+PPR G+ ++    +   A   ILY SCNP +L +DL  +   + + ++ LFD
Sbjct: 309 KPELIIVNPPRRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHI-RGYRLTKVQLFD 367

Query: 349 QFPYTRHMECGVLLVR 364
            FP++ H E   LLV+
Sbjct: 368 LFPHSDHFEVLALLVK 383


>gi|301770471|ref|XP_002920643.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
           [Ailuropoda melanoleuca]
          Length = 621

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 131/421 (31%), Gaps = 76/421 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 175 PYAEQLERKRLECEQVLQKLAKEIGSTNRALLPWLLSQRHKHNKACCPLEGVRPSPQQTE 234

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   I  DG+D        + K           ++ I     +++         
Sbjct: 235 YRNKCEFLVGIGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPGATKQVVKAFQEFIRS 294

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL---------LDDAWRECAIRLRD 140
                           Q+   TS+  QA+  + +H           L  +  +  +    
Sbjct: 295 TPYSAYNPETYSGHWKQLTVRTSRRGQAMAIVYFHPQKLGPEELAGLKASLAQHFMAGPG 354

Query: 141 ALHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                     +     KT     + L+    D  +      L +R   ++F Q N     
Sbjct: 355 KATGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTLAAE 414

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +    +   G  +L++ CG G   L LA    RV+ +E+ + +VE AR N   N 
Sbjct: 415 VLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALAPRVKRVVGIELCQEAVEDARVNARDNE 474

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + NV+     +++    +       +L              +DPPR+GL    +  V+  
Sbjct: 475 LTNVEFHCGRAEDLVPTLVSRLASQQL-----------VAILDPPRAGLHSKVILAVRRA 523

Query: 316 ---PHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
                +LY+SCNP +   +   L                +    D FP T H E  +L  
Sbjct: 524 ENLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTPHCEMLLLFE 583

Query: 364 R 364
           R
Sbjct: 584 R 584


>gi|126274016|ref|XP_001387373.1| tRNA(m5U54)methyltransferase [Scheffersomyces stipitis CBS 6054]
 gi|126213243|gb|EAZ63350.1| tRNA(m5U54)methyltransferase [Pichia stipitis CBS 6054]
          Length = 560

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 150/413 (36%), Gaps = 76/413 (18%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEPIHYRMRA----E 48
           SG    + +YEQQL  K + +      F          P ++     P+ YR R      
Sbjct: 176 SGCQYQNVEYEQQLKFKRETIVNAYKFFAPVLNNNNRLPEIRDTEPSPLKYRYRTKLTPH 235

Query: 49  FHIWHDGDDLYHIM--FDQQTKER--------------MRIDYFMPGSLLINALMIEMMA 92
           F++ +  + +          +K R              + I+    G+ +IN  M    A
Sbjct: 236 FNVPYKKNFVLETRPNLGFGSKGRPTWRKDVEIPDGSILDIEECTIGTPIINIGMKNERA 295

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
                       F+ ++   +    I+      ++++            +  +   +++ 
Sbjct: 296 R-----------FEQEFKKYKKGATILLREDTNVVNNGEDFELKEASTDVEGKISSVEVN 344

Query: 153 GRAN-----KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LA 204
                    KT +   R  V E +        +      F Q N  I   +  +V   LA
Sbjct: 345 IEGENKKLVKTCVTKSRQIVTEYV----NGYTFEFSAGEFFQNNNSILPAVTNYVKSNLA 400

Query: 205 ATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                +G+   L++ YCG+G FS+  + +  +V+ VE++  SV+ A  N   N++ N   
Sbjct: 401 IPNSKEGEPNYLVDAYCGSGLFSITCSDNVSKVIGVEVSADSVKFAERNAKNNNIENALF 460

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HIL 319
           +   +++                ID  S R   I  DPPR G D+  +  +  Y    I+
Sbjct: 461 LVGKAEQIF------------GSIDTPSNRTSVIL-DPPRKGCDEVFLNQLSDYHPAKIV 507

Query: 320 YISCNPDSLCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           YISCN  S  RD+            + +E +  FD FP T H+E   +L  K 
Sbjct: 508 YISCNVHSQARDVEWFINNTENGKDYYVESIKGFDFFPQTHHVESVAVLALKN 560


>gi|148665095|gb|EDK97511.1| HpaII tiny fragments locus 9c, isoform CRA_e [Mus musculus]
          Length = 626

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 136/422 (32%), Gaps = 78/422 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL +K     +++                               L+  +  P    
Sbjct: 182 PYTEQLEQKRLECERVLQKLAKEIGNTNRALLPWLLLQRQQHNKACCPLEGVKPSPQQTE 241

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG D        + K           ++ I     +++         
Sbjct: 242 YRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 301

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ 143
                           Q+   TS   QA+    +H     +     ++     H      
Sbjct: 302 TPYSAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPG 361

Query: 144 --ARKYQIQLIGRA-NKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             +    +  +     KT     + L+    D+ +      L +R   ++F Q N     
Sbjct: 362 KASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAE 421

Query: 197 HMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +L  V+     + G   +L++ CG G   L LA    RV+ +E+ + +VE AR N   N
Sbjct: 422 -VLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTN 480

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++NV+     +++    +      ++L              +DPPR+GL    +  ++ 
Sbjct: 481 ELSNVEFHCGRAEDLVPGLVSRLSSHQL-----------VAVLDPPRAGLHSKVILAIRK 529

Query: 315 ---YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLL 362
                 +LY+SCNP +   +   L                +    D FP T H E  +L 
Sbjct: 530 AENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCEMLILF 589

Query: 363 VR 364
            R
Sbjct: 590 ER 591


>gi|47227704|emb|CAG09701.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 586

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 74/425 (17%), Positives = 144/425 (33%), Gaps = 84/425 (19%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEP--IH 42
            YE+QL  K   +  ++                               L+  R  P    
Sbjct: 171 PYEEQLKWKEQEVVAVLQRLAKEIGNTNKAMLPWLFAQKGKYNKMCCPLEAIRPSPAQTE 230

Query: 43  YRMRAEFHIWH--DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-------- 92
           YR + EF I    +G+D        + K           +  ++A    ++         
Sbjct: 231 YRNKCEFLISTGANGEDKTIGFRLGKYKGGSCAVVGPADTCHVSAEAKRVVGQFQKFIRT 290

Query: 93  ---TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ 143
              ++           Q+   T+++++A+  + +H    D     A++     H      
Sbjct: 291 TPYSVYSPETYEGHWKQLTVRTTRTEEAMAIVFFHPQKLDEEEVNALKASMRKHFTEGEG 350

Query: 144 --ARKYQIQLIGRANKT---------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
             +    +  +    +T         ++     ++ E L      L +R   +SF Q N 
Sbjct: 351 KDSGVTSLYFVREGQRTSPNVEDLPCELVAGHGWIHEELL----GLKFRISPHSFFQVNT 406

Query: 193 GINVHMLEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           G    +   V   A       +L++ CG G   + LA+   +V+ +E+ + +VE A+ N 
Sbjct: 407 GAAEVLYSAVGEWAQLDEDTTVLDVCCGTGTIGISLAKRVKKVIGIELCQEAVEDAKVNA 466

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N + NV+     +++    +      +++           T  VDPPR+GL    +  
Sbjct: 467 QLNGLTNVEFHCGKAEDVFPNILNAVVSSKV-----------TAIVDPPRAGLHSKVILA 515

Query: 312 VQAY---PHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECG 359
           ++       ++Y++CN  +   +   L                R    D FP T HME  
Sbjct: 516 IRKAEHLKRLVYVACNAKAAMNNFIDLCRAPSNRVHGTPFRPVRAMAVDLFPQTMHMEML 575

Query: 360 VLLVR 364
           +LL R
Sbjct: 576 LLLER 580


>gi|330752034|emb|CBL80546.1| RNA methyltransferase [uncultured Flavobacteria bacterium]
          Length = 484

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 157/405 (38%), Gaps = 70/405 (17%)

Query: 11  EQQLAEKVDRLRQMMLAFQ-VPNLQ------IFRSEPIHYRMRAEFH---IWHDGDDLYH 60
           E Q   K +    +      VPN+       I      HYR + E+    I +D D+   
Sbjct: 98  ELQHKYKKESTLSLFKRIGKVPNIDDLFDELISSPNIFHYRNKMEYGFSAIGYDRDNKTD 157

Query: 61  I--------------MFDQQTKERMRIDYFMPGSLLINALMIE-----MMATIRLEPLLR 101
           I              M D   K+    D  +  ++ +     E          + E   R
Sbjct: 158 IDMFTLGFKRRGVWWMGDNLDKDSGLFDKLVEDNIRVIRDYCERSGFAPWHGPKREGFFR 217

Query: 102 AKLFQIDYLTSQSDQAIVT----------LIYHRLLDDAWRECAIRLRDALHARKYQI-- 149
             + +  Y T++    +VT            + +LL D ++E   R    LH+   +   
Sbjct: 218 YFVVRKSYKTNRLLFNLVTTSNNLPDFNLNNFSKLLQDIFKE---RFAGLLHSINDETGD 274

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAA 205
           + +  +  +K+    D + E L      L +     SF Q N      +     E+ L  
Sbjct: 275 RTLASSGSSKLISGEDKIIEELL----GLNFEISMKSFFQTNPKSAEKLYLKVIEYALEK 330

Query: 206 TKGIQGD-LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            + I    +++L+CG G    +LA      +++ V+I   ++  A+ N   N++  +K  
Sbjct: 331 KEAIDNTIVMDLFCGTGTIGQILASRSTNAKIIGVDIVASAINDAKKNAKINNIQGLKFF 390

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320
                +F            L +   +  + +TI +DP R+G+   T+  +       I+Y
Sbjct: 391 ANDVGKF------------LNNHPEYKNKIRTIILDPARAGIAPKTLLKIININADRIVY 438

Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +SCNP +  RD  +L    + I++++L DQFP+T H+E  VL  +
Sbjct: 439 VSCNPATQARDTEVLILNNYKIKKISLVDQFPHTAHIETVVLFEK 483


>gi|270308325|ref|YP_003330383.1| RNA methyltransferase, TrmA family [Dehalococcoides sp. VS]
 gi|270154217|gb|ACZ62055.1| RNA methyltransferase, TrmA family [Dehalococcoides sp. VS]
          Length = 400

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 136/372 (36%), Gaps = 69/372 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDD 57
             T     Y+ QL  K   +        + +L I    P      YR  A   I+H    
Sbjct: 89  GCTFQHINYQHQLNLKHRIVSAEFEKAGLHSLNISPVIPSDDKGGYRNHARLSIYH---- 144

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                 ++ ++  +++D     +  IN ++ E+         L                 
Sbjct: 145 ANLGFVNRFSRRHIQVDQCQIMNPGINRVLGELQGKCGETRQLS---------------- 188

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
               I H    D++      ++  ++         G+     + +  D            
Sbjct: 189 ----IRHASNKDSYLIQPKLIKADINIES------GQKEYHDLLMGHD------------ 226

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
             +     SF Q N      M + +           L++ Y G G F+++L+    RV+A
Sbjct: 227 --FCISAASFFQVNNPQAKKMAKLIKEHLNLNGSETLVDAYAGVGTFAVLLSPDCKRVIA 284

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E +  +V+ A+ NI+   ++N+++++  +++                      +   + 
Sbjct: 285 IEESAAAVKDAKLNIS--GIDNIELIQSKTEDVINRFEE---------------QMDALI 327

Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYT 353
           +DP RSG   + +  +   P  +++Y++C+P SL RDL  +L+    + ++   D FP T
Sbjct: 328 LDPSRSGAHPSVLATICQNPPRNLVYVACDPSSLARDLKILLAGPFELSQVIPVDMFPQT 387

Query: 354 RHMECGVLLVRK 365
            H+E   LL  K
Sbjct: 388 YHVETLALLKCK 399


>gi|74138627|dbj|BAE27134.1| unnamed protein product [Mus musculus]
          Length = 634

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 136/422 (32%), Gaps = 78/422 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL +K     +++                               L+  +  P    
Sbjct: 169 PYTEQLEQKRLECERVLQKLAKEIGNTNRALLPWLLLQRQQHNKACCPLEGVKPSPQQTE 228

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG D        + K           ++ I     +++         
Sbjct: 229 YRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 288

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ 143
                           Q+   TS   QA+    +H     +     ++     H      
Sbjct: 289 TPYSAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPG 348

Query: 144 --ARKYQIQLIGRA-NKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             +    +  +     KT     + L+    D+ +      L +R   ++F Q N     
Sbjct: 349 KASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAE 408

Query: 197 HMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +L  V+     + G   +L++ CG G   L LA    RV+ +E+ + +VE AR N   N
Sbjct: 409 -VLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTN 467

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++NV+     +++    +      ++L              +DPPR+GL    +  ++ 
Sbjct: 468 ELSNVEFHCGRAEDLVPGLVSRLSSHQL-----------VAVLDPPRAGLHSKVILAIRK 516

Query: 315 ---YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLL 362
                 +LY+SCNP +   +   L                +    D FP T H E  +L 
Sbjct: 517 AENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCEMLILF 576

Query: 363 VR 364
            R
Sbjct: 577 ER 578


>gi|195171542|ref|XP_002026564.1| GL21973 [Drosophila persimilis]
 gi|194111480|gb|EDW33523.1| GL21973 [Drosophila persimilis]
          Length = 296

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 98/223 (43%), Gaps = 21/223 (9%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214
           N     L   ++ + +    + L +R    +F Q N      + +  +      +   +L
Sbjct: 25  NPVDHILGTTHITDTI----QGLQFRISPLAFFQINTEGANVLYQQAIDLVAPTKNTTML 80

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           ++ CG G  +L  A+H  RVL VEI   +++ A++N  AN + N K    ++ +F ++M 
Sbjct: 81  DICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEANGIKNCKFFTGNADDFIKSMV 140

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDSLCRD 331
           RE  + +     +         VDPPR+GL + ++  ++   A   ++Y+SCNP S  R+
Sbjct: 141 REAMYEQEPGKPVDL----IAVVDPPRAGLHNRSIAAIRSASAINRLVYVSCNPHSAKRN 196

Query: 332 LSIL---------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              L               +     D FP+T H E  +L  R+
Sbjct: 197 FIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELVILFERE 239


>gi|327283217|ref|XP_003226338.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
           [Anolis carolinensis]
          Length = 631

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 69/421 (16%), Positives = 141/421 (33%), Gaps = 76/421 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            YE+QLA+K     Q++L                              L+  +S P+   
Sbjct: 184 PYEEQLAKKKQECEQVLLKLTRELGNNNRALLPWLFLQKEKYSGLCSPLEGVKSSPLQTE 243

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT------- 93
           YR + EF   I  + +D        + K           ++ I A++ ++          
Sbjct: 244 YRNKCEFLIGIGLNQEDKTVGFRLGKYKGGTCAVVEPFETIHIPAVVKKVAKAFQDYIRS 303

Query: 94  ----IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL------LDDAWRECAIRLRDALH 143
               +           Q+    S++   +  + ++        L +     A    +   
Sbjct: 304 TPYNVYSPETYEGHWRQLTVRISRNQDIMAIVYFNPQKVSKEGLTELQTSVAKYFMEGAG 363

Query: 144 ARKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                  L       K       + L+    ++ +      + +R   ++F Q N     
Sbjct: 364 KESGITSLYFVEEGQKKSPNREDLALEHVAGNKYIYEDLLGMRFRISPHAFFQVNTQAAE 423

Query: 197 HMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +      G +  +L++ CG G   + LA+   +V+ +E+ + +VE A+ N   N 
Sbjct: 424 VLYSAIQDWAQVGPETTVLDVCCGTGTIGITLAKKVKKVIGIELCQEAVEDAKVNAQLND 483

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           +NNV+     +++    +           ++  + +     VDPPR+GL    +  ++  
Sbjct: 484 LNNVEFYCGKAEDLVPQL-----------VNSLALQNCITVVDPPRAGLHSKVILAIRKS 532

Query: 316 ---PHILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVLLV 363
                ++Y+SCNP +   +   L                R    D FP+T H E  +   
Sbjct: 533 EHLKKLIYVSCNPRAAMNNFIDLCRAPSNRVKGGPFRPVRAMAVDLFPHTMHYELLLFFE 592

Query: 364 R 364
           R
Sbjct: 593 R 593


>gi|124487421|ref|NP_001074469.1| tRNA (uracil-5-)-methyltransferase homolog A isoform 1 [Mus
           musculus]
          Length = 613

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 136/422 (32%), Gaps = 78/422 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL +K     +++                               L+  +  P    
Sbjct: 169 PYTEQLEQKRLECERVLQKLAKEIGNTNRALLPWLLLQRQQHNKACCPLEGVKPSPQQTE 228

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG D        + K           ++ I     +++         
Sbjct: 229 YRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 288

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ 143
                           Q+   TS   QA+    +H     +     ++     H      
Sbjct: 289 TPYSAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPG 348

Query: 144 --ARKYQIQLIGRA-NKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             +    +  +     KT     + L+    D+ +      L +R   ++F Q N     
Sbjct: 349 KASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAE 408

Query: 197 HMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +L  V+     + G   +L++ CG G   L LA    RV+ +E+ + +VE AR N   N
Sbjct: 409 -VLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTN 467

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++NV+     +++    +      ++L              +DPPR+GL    +  ++ 
Sbjct: 468 ELSNVEFHCGRAEDLVPGLVSRLSSHQL-----------VAVLDPPRAGLHSKVILAIRK 516

Query: 315 ---YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLL 362
                 +LY+SCNP +   +   L                +    D FP T H E  +L 
Sbjct: 517 AENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCEMLILF 576

Query: 363 VR 364
            R
Sbjct: 577 ER 578


>gi|115504421|ref|XP_001219003.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|83642485|emb|CAJ16516.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 559

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 142/424 (33%), Gaps = 78/424 (18%)

Query: 11  EQQLAEKVDRLRQMMLAF---QVPNLQ-----IFRSEPI-HYRMRAEFHIWHD------- 54
           E+QL  K     Q+M A         +     I  S     YR   +F            
Sbjct: 146 EEQLQRKKKHCLQVMRAITLGGGSEYEKLFTGIHPSPHQTGYRNHVQFTFGFTEAGEATI 205

Query: 55  ---GDDLYHIMFDQQTKERMRIDYFMPGSLLINALM--------------IEMMATIRLE 97
                 +   ++  ++     I+   P + L+   +              +E+   I+ E
Sbjct: 206 GFLKGSVIDGIYAIESVLEKDIETVNPLAKLVADAVMTVYHLFKPLEKGGLEVYDKIKEE 265

Query: 98  PLLRAKLFQIDYL----------TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKY 147
              R    + + L          T    + IV  +  +L+     E   +   A H +  
Sbjct: 266 GFWRRLQVRHNVLGEVMVDAEMDTESVAEDIVASVKAQLVAALQGETLRKKLCAAHGKDT 325

Query: 148 -QIQLIGRANKT----------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             I  +   + T          +  L   +    LT     L +     SF Q N     
Sbjct: 326 ANIVSVQYHHGTGMNPAPPEAPRHVL---FGSATLTEHLLGLQFELSPTSFFQVNTAGME 382

Query: 197 HML-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +L E V  A    +  LL+L CG G   + LA+H  RV+ +E+ + +V  AR N   N 
Sbjct: 383 LLLRETVAVAELTPETTLLDLCCGTGTIGIALAKHVKRVIGIELVESAVRDARLNAERNG 442

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA- 314
           V N        +    ++  +      KDI           +DPPR+G+    +  ++  
Sbjct: 443 VRNATFNCGRVEHLLPSVISQLSPEDRKDI--------VAILDPPRAGVTPTVLKWIRGT 494

Query: 315 --YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
                ++YISC   +L RD   L+             +      D FP+T H+E   +L 
Sbjct: 495 ATIRRLVYISCEQKALQRDCPPLTKPATKAYRESPFNVVAGFAIDMFPHTPHVEMVAVLS 554

Query: 364 RKPS 367
           R  S
Sbjct: 555 RSNS 558


>gi|167855165|ref|ZP_02477936.1| hypothetical protein HPS_07413 [Haemophilus parasuis 29755]
 gi|167853710|gb|EDS24953.1| hypothetical protein HPS_07413 [Haemophilus parasuis 29755]
          Length = 389

 Score =  192 bits (487), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 141/390 (36%), Gaps = 44/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y +QLAEK   L++++  + + + +      S   H+R +A+  +    +  
Sbjct: 16  SCQWLHKSYTEQLAEKTSDLKRLVSPYLLQSTEFLPAVTSPLAHFRNKAKMVVTGSVERP 75

Query: 59  YHIMFDQQTKE--RMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTS 112
              + +             +      +  ++   +    L P      R +L  I    S
Sbjct: 76  ILGILNDDGTGTDLTDCPLYPQAFTPLFPILKTFIGRAGLVPYNVAKKRGELKYILITQS 135

Query: 113 QSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDR 164
           Q +Q+++          R L +      +            IQ    A    + +I L  
Sbjct: 136 QHNQSLMIRFVLRSELKRPLVERELPMLLAQLPEKSVVSLNIQPQHSAILEGEQEIFLTE 195

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
             V E        +        F Q N  +   +     A  K +    L +L+CG G F
Sbjct: 196 QQVLEE---RFNQIPLFIRPQGFFQTNPTVASQLYHTAQAWIKALPITQLWDLFCGVGGF 252

Query: 224 SLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            L  A           +  +EI+  ++ +A  +     + NVK   + S +F        
Sbjct: 253 GLHCAHTLQATNPNVALTGIEISASAIASATKSAQQLGLQNVKFASLDSAQFA------- 305

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                  ++        + V+PPR G+       +     P+++Y SCN +++ +D + L
Sbjct: 306 -------LNEQGTTPDLVIVNPPRRGIGKPLAEFINQLGSPYLIYSSCNAETMAKDFASL 358

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + ++++ LFD FP+T H E    LV K
Sbjct: 359 SH-YELKKVQLFDMFPHTAHYEVLTFLVNK 387


>gi|322437064|ref|YP_004219276.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX9]
 gi|321164791|gb|ADW70496.1| (Uracil-5)-methyltransferase [Acidobacterium sp. MP5ACTX9]
          Length = 424

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 142/379 (37%), Gaps = 32/379 (8%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
            G       Y  QL  K   L+Q++    +     +  ++P  YR R            +
Sbjct: 61  GGCHYQHADYPTQLTLKSQILQQILAPIGLQATPTVHSADPYAYRNRIRLRAEQIDGLTH 120

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI---DYLTSQSDQ 116
                + + E + I      + L+      +      EPL+   L +I   ++  S +++
Sbjct: 121 FGYSRRNSNEFLPIRMCPIAAPLLWRAAETLTRLAESEPLITRWLARISELEFFISPNEE 180

Query: 117 AIVTLIYHRLLDDAWRE------CAIRLRDALHA---RKYQIQLIGRANKTKICLDRDYV 167
            +    + R  +DA ++         RL+ AL        Q+         +      + 
Sbjct: 181 RLQIQFFLRNAEDANQKGQNFAAFCDRLKAALPELAGASAQMDPELSRRTRRTWPGVTWG 240

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
              L+ A     Y     +F Q N  +   +++ V A   G      +L+ G G F+  L
Sbjct: 241 TAGLSYAVGERKYWVSRGAFFQVNRFLVETLVQIVTANRSGTLA--WDLFAGVGLFARPL 298

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           +  F  V+                AA  ++N+ +   S +           F+ L+   +
Sbjct: 299 SETFQHVV---------AVEGAEAAAVALSNLSVQTPSLQAV-----HSPTFDFLRAAVL 344

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
              R   I +DPPR+GL      ++   A P I+Y+SC+P +L RDL++L   +    + 
Sbjct: 345 QRERPDLIVLDPPRAGLGTEGSALLARIAPPEIVYVSCDPVTLARDLAVLLPHYRATAVH 404

Query: 346 LFDQFPYTRHMECGVLLVR 364
           L D FP T H+E  V L R
Sbjct: 405 LVDLFPQTFHIETVVTLER 423


>gi|3183977|emb|CAA39515.1| protein Htf9C [Mus musculus]
          Length = 677

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 127/374 (33%), Gaps = 54/374 (14%)

Query: 33  LQIFRSEPIH--YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI 88
           L+  +  P    YR + EF   +  DG D        + K           ++ I     
Sbjct: 281 LEGVKPSPQQTEYRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATK 340

Query: 89  EMMATI-----------RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137
           +++                         Q+   TS   QA+    +H     +     ++
Sbjct: 341 QVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLK 400

Query: 138 LRDALH--------ARKYQIQLIGRA-NKTK----ICLDRDYVDERLTVAGRTLIYRQIE 184
                H        +    +  +     KT     + L+    D+ +      L +R   
Sbjct: 401 ASLVCHFMEGPGKASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISP 460

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           ++F Q N      +L  V+     + G   +L++ CG G   L LA    RV+ +E+ + 
Sbjct: 461 HAFFQVNTPAAE-VLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQE 519

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +VE AR N   N ++NV+     +++    +      ++L              +DPPR+
Sbjct: 520 AVEDARMNALTNELSNVEFHCGRAEDLVPGLVSRLSSHQL-----------VAVLDPPRA 568

Query: 303 GLDDATVGMVQA---YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQF 350
           GL    +  ++       +LY+SCNP +   +   L                +    D F
Sbjct: 569 GLHSKVILAIRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLF 628

Query: 351 PYTRHMECGVLLVR 364
           P T H E  +L  R
Sbjct: 629 PQTPHCEMLILFER 642


>gi|116283517|gb|AAH27431.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Mus
           musculus]
 gi|116283883|gb|AAH38486.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Mus
           musculus]
          Length = 602

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 136/422 (32%), Gaps = 78/422 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL +K     +++                               L+  +  P    
Sbjct: 158 PYTEQLEQKRLECERVLQKLAKEIGNTNRALLPWLLLQRQQHNKACCPLEGVKPSPQQTE 217

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG D        + K           ++ I     +++         
Sbjct: 218 YRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 277

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ 143
                           Q+   TS   QA+    +H     +     ++     H      
Sbjct: 278 TPYSAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPG 337

Query: 144 --ARKYQIQLIGRA-NKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             +    +  +     KT     + L+    D+ +      L +R   ++F Q N     
Sbjct: 338 KASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAE 397

Query: 197 HMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +L  V+     + G   +L++ CG G   L LA    RV+ +E+ + +VE AR N   N
Sbjct: 398 -VLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTN 456

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++NV+     +++    +      ++L              +DPPR+GL    +  ++ 
Sbjct: 457 ELSNVEFHCGRAEDLVPGLVSRLSSHQL-----------VAVLDPPRAGLHSKVILAIRK 505

Query: 315 ---YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLL 362
                 +LY+SCNP +   +   L                +    D FP T H E  +L 
Sbjct: 506 AENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCEMLILF 565

Query: 363 VR 364
            R
Sbjct: 566 ER 567


>gi|58865360|ref|NP_001011895.1| tRNA (uracil-5-)-methyltransferase homolog A [Rattus norvegicus]
 gi|53733829|gb|AAH83619.1| TRM2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Rattus
           norvegicus]
 gi|149019780|gb|EDL77928.1| rCG36750, isoform CRA_a [Rattus norvegicus]
          Length = 615

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 138/422 (32%), Gaps = 78/422 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL +K     +++                               L+  +  P    
Sbjct: 170 PYTEQLEQKRLECERVLQKLAKEIGNTNHALLPWLLLQRQQHNKACCPLEGVKPSPQQTE 229

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 230 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAPPFDTVHIPQATKQLVKAFQEFIRS 289

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ 143
                           Q+   TS+  QA+    +H     +     ++     H      
Sbjct: 290 TPYSAYDPETYTGHWKQLTVRTSRRGQAMAIAHFHPQKLSSEEVAGLKASLVCHFMEGPG 349

Query: 144 --ARKYQIQLIGRA-NKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             +    +  +     KT     + L+    D+ +      L +R   ++F Q N     
Sbjct: 350 KASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAE 409

Query: 197 HMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +L  V+     + G   +L++ CG G   L LA    +V+ +E+ + +VE AR N   N
Sbjct: 410 -VLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKKVIGIELCQEAVEDARMNALTN 468

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++NV+     +++    +  +    +L              +DPPR+GL    +  ++ 
Sbjct: 469 ELSNVEFHCGRAEDLVPGLVSKLSSQQL-----------VAVLDPPRAGLHSKVILAMRK 517

Query: 315 ---YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLL 362
                 +LY+SCNP +   +   L                +    D FP T H E  +L 
Sbjct: 518 AENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCEMLILF 577

Query: 363 VR 364
            R
Sbjct: 578 ER 579


>gi|260905687|ref|ZP_05914009.1| 23S rRNA methyluridine methyltransferase [Brevibacterium linens
           BL2]
          Length = 401

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/390 (21%), Positives = 152/390 (38%), Gaps = 42/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-PNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S T +   +  Q+A+K     +++        L         +R RA+  +      +  
Sbjct: 28  SCTFIETPHRDQVADKEAWCVEVLAGHSPDAWLPAAVGLDRDFRNRAKLAVGGSAGSVTL 87

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDYLTSQ 113
            + DQ     + +      +  I A++  +   +    L        R +L  +    + 
Sbjct: 88  GILDQDFHG-VDLRECGIQAPQIRAVIPTIAHFLNGTGLAPYDVKARRGELKFVHITAAP 146

Query: 114 SDQAI---VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY--VD 168
           S   +   V    H L  D  R     LR  L         +   +K  +   R+   + 
Sbjct: 147 SGDLMTRFVVRSQHGL--DVLRSRGQELRALLPTATVISVNLLPEHKAVLEGSREEMLLG 204

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           + L +    +       SF Q N  + + +   V A    I    L +LYCG G F+L  
Sbjct: 205 DSLRMNLDRVDLHLRPQSFFQTNTDVAIGLYNQVAAWVDEIAPSSLWDLYCGVGGFALYC 264

Query: 228 A-----RHFDRVLAVEIAKPSVEAARYNIAANHVN-----NVKIVRMSSKEFTQAMRRER 277
           A     +   RV  VE+++ ++E+A+ +      +      V+ +   + EF +A     
Sbjct: 265 AGTTGQQSPRRVTGVELSEQAIESAKISAVELGFDSQSGATVEFIADDATEFAEANLASG 324

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
           E            R   + V+PPR G+       ++     HI+Y SCNP +L +DL  +
Sbjct: 325 E------------RPDCVIVNPPRRGIGARLSTALEDSGVEHIVYSSCNPLTLAKDLDQM 372

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            + +T+ER  +FD FP+T+H+E  V+L R+
Sbjct: 373 PS-YTVERARVFDMFPHTKHLEVAVVLQRR 401


>gi|303314227|ref|XP_003067122.1| tRNA -methyltransferase family protein [Coccidioides posadasii C735
           delta SOWgp]
 gi|240106790|gb|EER24977.1| tRNA -methyltransferase family protein [Coccidioides posadasii C735
           delta SOWgp]
 gi|320037383|gb|EFW19320.1| tRNA(m5U54)methyltransferase [Coccidioides posadasii str. Silveira]
          Length = 578

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 148/403 (36%), Gaps = 69/403 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQM------MLAFQVPNLQIFRSEPIHYRMRAEFHIWHDG 55
                +  YE QL  K   + +       + + QVP ++     P+ Y  R +    H  
Sbjct: 200 GCQFQMLPYEDQLKHKKRIIEKAYINFSGLNSVQVPGIEETMGSPLQYGYRTKLT-PHFS 258

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                        E + I + M G   +  +    + T  +   L+ +  ++     Q  
Sbjct: 259 LPGRVKKAAHNLTEPLNIGFMMKGRRKVMDIEDCPLGTDIVRVGLKNERQRVLDSVHQFK 318

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTV- 173
                L+         RE   R+       + +++      K  I +D  DY++E+  + 
Sbjct: 319 AGATLLV---------RENTRRIP------RDKVEENATEKKGVIRIDHPDYIEEKSYIT 363

Query: 174 --------AGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD------LLE 215
                        ++R +  +F Q N  I      ++ E  + A+            LL+
Sbjct: 364 DQKGISSEYIDDYLFRNVAGTFFQNNNSILSPFTQYVRERAVPASADSDPSKPKLKYLLD 423

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG+G F++ L+  F   L V++A  S+E+AR N   N + N       + +  Q +  
Sbjct: 424 AYCGSGLFTIALSTVFRSSLGVDVAAGSIESARENARLNKLKNTGFAAADAAKLFQDVP- 482

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS 333
                       +      + +DPPR G D   +  + A+    ++Y+SCN  +  RD+ 
Sbjct: 483 ------------YPPHQTLLVIDPPRKGCDTNFLKQLLAFGPARVVYVSCNVHTQARDVG 530

Query: 334 ILSTT------------HTIERLALFDQFPYTRHMECGVLLVR 364
           ++               + IE +  FD FP T H+E   +L R
Sbjct: 531 VMVRGDTGDGSGKSSVRYEIESIKGFDFFPQTGHVESVAVLNR 573


>gi|148665092|gb|EDK97508.1| HpaII tiny fragments locus 9c, isoform CRA_b [Mus musculus]
          Length = 606

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 136/422 (32%), Gaps = 78/422 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL +K     +++                               L+  +  P    
Sbjct: 162 PYTEQLEQKRLECERVLQKLAKEIGNTNRALLPWLLLQRQQHNKACCPLEGVKPSPQQTE 221

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG D        + K           ++ I     +++         
Sbjct: 222 YRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 281

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ 143
                           Q+   TS   QA+    +H     +     ++     H      
Sbjct: 282 TPYSAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPG 341

Query: 144 --ARKYQIQLIGRA-NKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             +    +  +     KT     + L+    D+ +      L +R   ++F Q N     
Sbjct: 342 KASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAE 401

Query: 197 HMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +L  V+     + G   +L++ CG G   L LA    RV+ +E+ + +VE AR N   N
Sbjct: 402 -VLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTN 460

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++NV+     +++    +      ++L              +DPPR+GL    +  ++ 
Sbjct: 461 ELSNVEFHCGRAEDLVPGLVSRLSSHQL-----------VAVLDPPRAGLHSKVILAIRK 509

Query: 315 ---YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLL 362
                 +LY+SCNP +   +   L                +    D FP T H E  +L 
Sbjct: 510 AENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCEMLILF 569

Query: 363 VR 364
            R
Sbjct: 570 ER 571


>gi|124487423|ref|NP_001074468.1| tRNA (uracil-5-)-methyltransferase homolog A isoform 2 [Mus
           musculus]
 gi|74139903|dbj|BAE31790.1| unnamed protein product [Mus musculus]
 gi|74141122|dbj|BAE22119.1| unnamed protein product [Mus musculus]
 gi|74191426|dbj|BAE30293.1| unnamed protein product [Mus musculus]
 gi|74191631|dbj|BAE30387.1| unnamed protein product [Mus musculus]
 gi|74198831|dbj|BAE30643.1| unnamed protein product [Mus musculus]
 gi|74198924|dbj|BAE30683.1| unnamed protein product [Mus musculus]
 gi|74207465|dbj|BAE30911.1| unnamed protein product [Mus musculus]
 gi|74212582|dbj|BAE31030.1| unnamed protein product [Mus musculus]
 gi|74214625|dbj|BAE31153.1| unnamed protein product [Mus musculus]
 gi|74219662|dbj|BAE29598.1| unnamed protein product [Mus musculus]
 gi|74220248|dbj|BAE31303.1| unnamed protein product [Mus musculus]
 gi|74225302|dbj|BAE31584.1| unnamed protein product [Mus musculus]
 gi|74225530|dbj|BAE31672.1| unnamed protein product [Mus musculus]
 gi|74228782|dbj|BAE21880.1| unnamed protein product [Mus musculus]
 gi|148665091|gb|EDK97507.1| HpaII tiny fragments locus 9c, isoform CRA_a [Mus musculus]
          Length = 613

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 136/422 (32%), Gaps = 78/422 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL +K     +++                               L+  +  P    
Sbjct: 169 PYTEQLEQKRLECERVLQKLAKEIGNTNRALLPWLLLQRQQHNKACCPLEGVKPSPQQTE 228

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG D        + K           ++ I     +++         
Sbjct: 229 YRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 288

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ 143
                           Q+   TS   QA+    +H     +     ++     H      
Sbjct: 289 TPYSAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPG 348

Query: 144 --ARKYQIQLIGRA-NKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             +    +  +     KT     + L+    D+ +      L +R   ++F Q N     
Sbjct: 349 KASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAE 408

Query: 197 HMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +L  V+     + G   +L++ CG G   L LA    RV+ +E+ + +VE AR N   N
Sbjct: 409 -VLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTN 467

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++NV+     +++    +      ++L              +DPPR+GL    +  ++ 
Sbjct: 468 ELSNVEFHCGRAEDLVPGLVSRLSSHQL-----------VAVLDPPRAGLHSKVILAIRK 516

Query: 315 ---YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLL 362
                 +LY+SCNP +   +   L                +    D FP T H E  +L 
Sbjct: 517 AENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCEMLILF 576

Query: 363 VR 364
            R
Sbjct: 577 ER 578


>gi|297485088|ref|XP_002694704.1| PREDICTED: HpaII tiny fragments locus 9C [Bos taurus]
 gi|296478319|gb|DAA20434.1| HpaII tiny fragments locus 9C [Bos taurus]
          Length = 610

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 137/419 (32%), Gaps = 74/419 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLA--------------------FQVPNLQIFRSEP--IH--YR 44
            YE+QL  K     Q++                      F     ++  S P   H  YR
Sbjct: 166 PYEEQLERKRQECEQVLQKLARXVXARASRAGRCVRSARFLHLAHRLLGSXPGKSHTEYR 225

Query: 45  MRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------- 94
            + EF   +  DG+D        + K           ++ I     +++           
Sbjct: 226 NKCEFLVGVGVDGEDNTVGCRLSKYKSGTCAVAAPFDTVHIPGATKQVVRAFQEFIRSTP 285

Query: 95  ---RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL---------LDDAWRECAIRLRDAL 142
                         Q+   TS+  QA+    +H           L  +  +  +      
Sbjct: 286 YSAYDPETYSGHWKQLTVRTSRRGQAMAIAYFHPQNLSPEELAGLKTSLAQYFMEGPGKA 345

Query: 143 HARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
                   +     KT     + L+    D  +      L +R   ++F Q N      +
Sbjct: 346 SGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIREDVLGLTFRISPHAFFQVNTAAAEVL 405

Query: 199 LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +    +   G  +L++ CG G   L LAR   RV+ VE+++ +VE AR N   N ++
Sbjct: 406 YTLIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVVGVELSQEAVEDARVNALDNELS 465

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---A 314
           NV+     ++E   A+       +L              +DPPR+GL    V  V+    
Sbjct: 466 NVEFHCGRAEELVPALVSRLASQQL-----------VAILDPPRAGLHSKAVLAVRRAEN 514

Query: 315 YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLVR 364
              +LY+SCNP +   +   L                +    D FP T H E  +L  R
Sbjct: 515 VRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFRPVKAVAVDLFPQTLHCEMLILFER 573


>gi|113969161|ref|YP_732954.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. MR-4]
 gi|122944083|sp|Q0HM20|RUMB_SHESM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|113883845|gb|ABI37897.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp. MR-4]
          Length = 384

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 132/375 (35%), Gaps = 40/375 (10%)

Query: 12  QQLAEKVDRLRQMMLAF-QVPNLQIFRS---EPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           QQLA K   L+Q++  F      Q       +   +R +A+             +     
Sbjct: 27  QQLAAKTQELQQLLAPFVDNAEPQFLPPVVGDSSGFRNKAKMVALGAAHAPVLGIVSPSG 86

Query: 68  KERMRIDYFM-PGSLL---------INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +     D  + P  +          +    I      + +  L+  L     +  +    
Sbjct: 87  EAVSLCDCLLYPADMQALLHRLERFVQQAGIPPYRVDKAKGELKFILLTRSQVRGEYMLR 146

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKICLDRDYVDERLT 172
            V L     +    RE    + +    +   + L          + +I L  +    RL 
Sbjct: 147 FV-LRSRDAIARIERELPALMAEYPQIKVVSVNLQPVHMAILEGEEEIFLTENT---RLE 202

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
                +       SF Q N  +   + +             L +L+CG G F L  A   
Sbjct: 203 ERFNDVPLFIRPKSFFQTNPQVAAKLYQTAREWVADFAPASLWDLFCGVGGFGLHCAAKD 262

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             +  +EI   ++  A+ +     ++ V+ + + S +F +              D    +
Sbjct: 263 IPLTGIEIEAEAIACAKMSAQLMGLDKVQFMALDSTDFAKG-------------DAAQTK 309

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349
            + I V+PPR G+ ++    +   A   ILY SCNP +L +DL  +   + + ++ LFD 
Sbjct: 310 PELIIVNPPRRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHI-RGYRLTKVQLFDL 368

Query: 350 FPYTRHMECGVLLVR 364
           FP++ H E   LLV+
Sbjct: 369 FPHSDHFEVLALLVK 383


>gi|227496372|ref|ZP_03926662.1| 23S rRNA methyluridine methyltransferase [Actinomyces urogenitalis
           DSM 15434]
 gi|226834099|gb|EEH66482.1| 23S rRNA methyluridine methyltransferase [Actinomyces urogenitalis
           DSM 15434]
          Length = 410

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 140/396 (35%), Gaps = 57/396 (14%)

Query: 12  QQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           +QLA K  R+  ++             +   S    +R +A+  +          +   Q
Sbjct: 31  EQLALKQARVAALLADGAAALSPQVWQEPVASAASRFRNKAKMVVSGTVQAPVLGILGPQ 90

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQSDQAIV 119
               + +         I   +  +  T+    L+       R +L  +    S     +V
Sbjct: 91  G-RGIDLRACPLHVEAIEEALPVLARTVTRLGLVPYDVSARRGELKHLLVTASPDGDLMV 149

Query: 120 TLI-YHRLLDDAWRECAIRLRDALHAR---KYQIQLIGRA---NKTKICLDRDYVDERLT 172
             +   R   +  R+   RLR+ L         +Q + +A    + +I L  +   +RL 
Sbjct: 150 RWVLRSRRHLEVLRDELPRLREELETLAVMSVNLQPVHQAIIEGEEEIVLTTEPGGDRLL 209

Query: 173 V------------AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-----GDLLE 215
           +              R L       SF Q N  +   +          +        + +
Sbjct: 210 MRLELPEQAGPSADHRDLPLLLPTQSFFQTNTAVAEQLYATAARWAGDLDTGSRPAQVWD 269

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAM 273
           L+CG G F+L LA    +VL VE++ P+++ AR       ++    +     ++      
Sbjct: 270 LFCGVGGFALALAGPGRQVLGVEVSAPAIDGARQAARLMGLDAQAARFEAGDARVLDPG- 328

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331
                                + ++PPR G+       ++      +LY SCNP SL RD
Sbjct: 329 --------------AGAVPDLLVLNPPRRGIGQDLAARIESAGVERVLYSSCNPASLARD 374

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           L  +S+ +T  R  LFD FP+T H E  + L R PS
Sbjct: 375 LEAMSS-YTAVRAQLFDMFPHTDHAEVLIELRRSPS 409


>gi|309811112|ref|ZP_07704909.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Dermacoccus
           sp. Ellin185]
 gi|308434900|gb|EFP58735.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Dermacoccus
           sp. Ellin185]
          Length = 377

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 142/382 (37%), Gaps = 33/382 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           S T L   Y++QL  K   +   + A   P   L    S P  +R + +  +    D   
Sbjct: 13  SCTNLAVPYDEQLMRKQTSVEHTLAARVAPEAWLSPAASRPAAFRNKVKLAVGGHVDAPT 72

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL------RAKLFQIDYLTSQ 113
             +     +  + +         I  ++ ++   I    L+      R    +   +T+ 
Sbjct: 73  LGLALPG-RPAVDLRECPIQERPIWDVVPDLAGFITYARLMPYDVDARTGELKFVIVTTN 131

Query: 114 SDQAIVTLIYHRLLD--DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---D 168
           +D  ++     R  D  D        L D L         I   +K  +  D +      
Sbjct: 132 TDGELLVRFVVRTNDGVDRLSAALPALTDRLPQIVAVSANIHPEHKAVVEGDVEIALTPT 191

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           + L  A   +       SF Q N  +   +     A    +    +L+LYCG G F+L L
Sbjct: 192 QTLRAAVGDVTLYLQHRSFFQTNTDVAAALYRQARAWADDVDARQVLDLYCGVGGFALHL 251

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDID 286
           A    RV  VEI   ++++AR +      +  V      +               + + D
Sbjct: 252 ADGTRRVHGVEIEPSAIDSARRSATEAGSDATVTFDVGDASTLV-----------MPEHD 300

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSILSTTHTIERLA 345
           +       + V+PPR G++     + ++   H++Y SCNP SL  DL+ + +   +    
Sbjct: 301 V----PDLVVVNPPRRGIEALADALERSCVAHVIYSSCNPTSLAADLAAMPS-FDVRAAR 355

Query: 346 LFDQFPYTRHMECGVLLVRKPS 367
           LFD FP+T H E   LL R+P+
Sbjct: 356 LFDMFPHTNHAEVAALLSRRPA 377


>gi|332687203|ref|YP_004456977.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC
           35311]
 gi|332371212|dbj|BAK22168.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC
           35311]
          Length = 212

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 19/218 (8%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           +    +T        ++E++      + +R    +F Q N      +    + A   +  
Sbjct: 11  VVMGEETIHLWGEHQIEEKI----NQVTFRLSSRAFFQLNPKQTEILYGEAIKALDPLPS 66

Query: 212 D-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D +++ YCG G   + +AR    V  ++    ++E A+ N    +  N      ++++  
Sbjct: 67  DKIIDAYCGVGTIGISIARKVKEVRGMDTIPQAIEDAKQNAKKVNATNTYYEVGNAEKLL 126

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
                              +    I VDPPR GLD   +  +  +P   ++YISCN  +L
Sbjct: 127 PKWLE------------QGFIPDGIIVDPPRVGLDKKLLQTILNFPPKKLVYISCNVSTL 174

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
            RDL  L+    ++ L   D FP T   E    L RK 
Sbjct: 175 ARDLVSLTKVFKVDYLQSIDMFPQTARCEVVAKLTRKK 212


>gi|257460625|ref|ZP_05625726.1| trna (uracil-5-)-methyltransferase
           (trna(m-5-u54)-methyltransferase) [Campylobacter
           gracilis RM3268]
 gi|257441956|gb|EEV17098.1| trna (uracil-5-)-methyltransferase
           (trna(m-5-u54)-methyltransferase) [Campylobacter
           gracilis RM3268]
          Length = 519

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/154 (50%), Positives = 105/154 (68%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           DLLELYCG+GNF++ LA  F+RVLA EI+K S+  AR N   N V N + VR+S+ E   
Sbjct: 365 DLLELYCGHGNFTIPLAAKFNRVLASEISKSSIANARINCELNGVCNAQFVRLSADELMS 424

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
           A  R REF RLK IDI  Y F  + +DPPR+GL+ + +  ++ + +++YISCNP +L  +
Sbjct: 425 AFARRREFERLKGIDIFGYDFSHVLIDPPRAGLEPSVIDFIKNFENLIYISCNPQTLFEN 484

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L  L  TH + R A+FDQF +T H+ECGVLL R+
Sbjct: 485 LRSLCATHEVRRFAIFDQFAHTAHIECGVLLKRR 518



 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 11/208 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD----GDD 57
               L + YE Q+  K   +      F     + F S+P +YR+RAEF IWHD      D
Sbjct: 10  GSCTLGEPYEDQILYKKQLIGDKFREFFDGEFEFFASQPQNYRIRAEFGIWHDIWHSAFD 69

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           L + M   ++K ++ I+     +L I  LM  ++  +R    L+ KLF +++++  S   
Sbjct: 70  LAYTMGGARSK-KILINECPKVALPIANLMPRLLEVLRRSEALKEKLFGVEFISCASG-I 127

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           + TL+YH+ L +  +E    L   L      I+++ RA   K+      + + L V  R 
Sbjct: 128 LATLLYHKRLGEREQEAICELAGKL-----GIRVMARARGQKLLSGELSLTDELCVDERV 182

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAA 205
             +R  EN+F QPN G+N  M+ W  + 
Sbjct: 183 YKFRFGENAFIQPNRGVNEKMIAWARSC 210


>gi|219848732|ref|YP_002463165.1| (Uracil-5)-methyltransferase [Chloroflexus aggregans DSM 9485]
 gi|219542991|gb|ACL24729.1| (Uracil-5)-methyltransferase [Chloroflexus aggregans DSM 9485]
          Length = 398

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 127/384 (33%), Gaps = 44/384 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSE-PIHYRMRA-------EFHI 51
                   Y  Q+  K D LR++       V    +  S  P  YR R         F +
Sbjct: 36  GCAFQDRSYTDQVTAKTDVLRELYATGGIAVDEFIVIPSPNPFAYRTRMDYVATKGRFGL 95

Query: 52  WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-LRAKLFQIDYL 110
              G   Y I       E        P +      + +    + +    +R     + Y+
Sbjct: 96  RARGKFNYII-------ELTTCHLIPPTAFAAARAVWQRAGELGIADYDIRTHTGFLRYI 148

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
             + +     L+          E    L     A+   +      N T    D  + + R
Sbjct: 149 VVRRNAMDELLLAAVTAAGGDEETMTELATTALAQAGVVGFHWLINDT--LTDVSFGEPR 206

Query: 171 LTVAGRTLIYRQI-------ENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGN 222
                 TL  R          N+F Q N  +   ++ + V AA       + +LY G G 
Sbjct: 207 RHWGAATLAMRIGEMTCFIGPNTFFQNNVYLADRLIGDAVAAANPNPTMRVADLYGGVGA 266

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LAR    V  VE    S   A++N   N + N   +   +  + QA          
Sbjct: 267 IGLHLARRAAVVDCVEAVAESATLAQHNAVVNGITNFNPICADTLAYLQAQ--------- 317

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHT 340
                 S     I  DPPR+GL       +       I+Y+SCNP +   DL +L   + 
Sbjct: 318 -----PSGSLPLIVADPPRTGLGPQVCKELLRIGAQRIVYVSCNPLTQVSDLRLLQAAYR 372

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +  L  +D FP+T H+E   +L R
Sbjct: 373 VTDLRGYDMFPHTPHVETIAVLER 396


>gi|260770022|ref|ZP_05878955.1| RNA methyltransferase TrmA family [Vibrio furnissii CIP 102972]
 gi|260615360|gb|EEX40546.1| RNA methyltransferase TrmA family [Vibrio furnissii CIP 102972]
          Length = 377

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 139/382 (36%), Gaps = 38/382 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S T     Y  Q+  K ++L+ ++        L   RS+   +R +A+  +         
Sbjct: 13  SCTHCATPYASQVEIKDNQLKALLTNLAPQQWLAPMRSQETAFRNKAKMVVLGAAHAPIL 72

Query: 61  IMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAK----LFQIDYLTSQ 113
            +  Q     + +         +  +   + + +    + P  +AK    L  I    S+
Sbjct: 73  GIESQLDGAALSLTQCPLYPAPTQALLEYLQQWIRIAGIPPYNKAKKKGELKFILLTRSE 132

Query: 114 SDQAIVTLIYHR--LLDDAWRECAIRLRDALHA---RKYQIQLIGRAN---KTKICLDRD 165
            +   +     R   +          L  A  A       IQ +  A    + +I L   
Sbjct: 133 HNGQFMLRFVSRSTAVLPRIERNLPALLAAFPAIEVVSVNIQPVHMARLEGEEEIFLTDT 192

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS 224
            V   L      +       SF Q N  +   +        + +    + +L+CG G F+
Sbjct: 193 QV---LMEQFNDVPMVIRPKSFFQTNPQVASSLYATARQWVRELAPAHMWDLFCGVGGFA 249

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A     V  +EI   ++ +A+ + +A  ++N+    + S +F+              
Sbjct: 250 LHCASLTTAVTGIEIEPEAIASAKRSASAMGIDNLSFAALDSAQFSLG------------ 297

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                     + V+PPR GL DA    +   A  HI+Y SCNP ++  D+  L+  +   
Sbjct: 298 ---QDVAPDLVLVNPPRRGLGDALTQQLAMLAPKHIIYSSCNPLTMKNDVEQLTD-YRAV 353

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
           +L  FD FP+T H E  +LL R
Sbjct: 354 KLQWFDMFPHTEHAEVLLLLER 375


>gi|219871204|ref|YP_002475579.1| 23S rRNA methyluridine methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219691408|gb|ACL32631.1| 23S rRNA methyluridine methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 389

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 139/390 (35%), Gaps = 44/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y +QLAEK   L++++  + + + +      S   H+R +A+  +    +  
Sbjct: 16  SCQWLHKSYTEQLAEKTSDLKRLVSPYLLQSTEFLPAVTSPLAHFRNKAKMVVTGSVERP 75

Query: 59  YHIMFDQQTKE--RMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTS 112
              + +             +      +  ++   +    L P      R +L  I    S
Sbjct: 76  ILGILNDDGTGTDLTDCPLYPQAFTPLFPILKTFIGRAGLVPYNVAKKRGELKYILITQS 135

Query: 113 QSDQAIVTLIY-----HRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDR 164
           Q +Q+++          R L +      +            IQ    A    + +I L  
Sbjct: 136 QHNQSLMIRFVLRSELKRPLVERELPMLLAQLPEKSVVSLNIQPQHSAILEGEQEIFLTE 195

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNF 223
             V E        +        F Q N  +   +        K      L +L+CG G F
Sbjct: 196 QQVLEE---RFNQIPLFIRPQGFFQTNPTVASQLYHTAQEWIKERPITQLWDLFCGVGGF 252

Query: 224 SLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            L  A           +  +EI+  ++ +A  +     + NVK   + S +F        
Sbjct: 253 GLHCANTLQTNNPNVALTGIEISASAIASATKSAQQLGLQNVKFASLDSAQFA------- 305

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                  ++        + V+PPR G+       +     P+++Y SCN +++ +D + L
Sbjct: 306 -------LNEQGTTPDLVIVNPPRRGIGKPLAEFINQLGSPYLIYSSCNAETMAKDFASL 358

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + ++++ LFD FP+T H E    LV K
Sbjct: 359 SH-YELKKVQLFDMFPHTAHYEVLTFLVNK 387


>gi|207343360|gb|EDZ70840.1| YKR056Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 602

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 147/393 (37%), Gaps = 51/393 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHIWHDGDDLY 59
           Y+ QL  K   +      F          P      + P    YR +   H         
Sbjct: 222 YDDQLELKRKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLRFGYRTKITPHFDMPKRKQK 281

Query: 60  HIM------FDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLL--RAKLFQIDYL 110
            +       F Q+ + + R D    G    I  +   ++AT  L   L    + F+ ++ 
Sbjct: 282 ELSVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERRKFEQEFK 341

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-ICLDRDYVD- 168
             +    I+      +LD +         +A       I  +   +K   + L +  V  
Sbjct: 342 NYKKGATILLRENTTILDPSKPTLEQLTEEASRDENGDISYVEVEDKKNNVRLAKTCVTN 401

Query: 169 --ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGD------LLELYCG 219
             + +T       +      F Q N  I   + ++V        +GD      L++ YCG
Sbjct: 402 PRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCG 461

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           +G FS+  ++  D+V+ VEI+  SV  A  N  AN V N + +   +++  +++    E 
Sbjct: 462 SGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFESIDTPSE- 520

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-- 335
                         ++ +DPPR G D+  +  + AY    I+YISCN  S  RD+     
Sbjct: 521 ------------NTSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLK 568

Query: 336 ----STTHTIERLALFDQFPYTRHMECGVLLVR 364
                + + IE +  FD FP T H+E   ++ R
Sbjct: 569 ETENGSAYQIESIRGFDFFPQTHHVESVCIMKR 601


>gi|238879370|gb|EEQ43008.1| endo-exonuclease NUCR [Candida albicans WO-1]
          Length = 551

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 146/406 (35%), Gaps = 66/406 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHI 51
                  +Y+QQLA K   +      F          P +   +  P   +YR +   H 
Sbjct: 171 GCQFQNIEYQQQLAIKKQTIINAYDYFAPKLVSQKLLPEVLPTQESPLTYNYRTKLTPHF 230

Query: 52  WHDGDDLYHIM-----FDQQTKER--------------MRIDYFMPGSLLINALMIEMMA 92
           +         +         +K R              + I+    G+ +IN  +     
Sbjct: 231 YIPNKKTGKDLPCPPNLGIASKGRPTWRKSDFGPEGTNIDIEECNIGTKIINQGL----- 285

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
                     + F  +Y+        +     ++L +        + +     K +++L 
Sbjct: 286 ------ANERRRFNTEYVKYSKGATFLLREDTKVLQEDTVIGPGSVDENGQVSKIEVELE 339

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGI 209
                 K C+ +    + +       I+      F Q N  I   ++++V   L+ ++  
Sbjct: 340 DNTKLVKTCVTQ--TRQIVQEYINGYIFEFSAGEFFQNNNSILPIVIDYVRSNLSLSEDQ 397

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG+G FS+  + +  +V+ VEI+  S+  A+ N   N++ N   +   ++E 
Sbjct: 398 PNYLVDAYCGSGLFSITCSSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEI 457

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
             ++                    ++ +DPPR G DD  +  +  Y    I+YISCN  S
Sbjct: 458 FASID-------------TPNNQTSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHS 504

Query: 328 LCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             RD+            + +E +  FD FP T H+E   +L  K +
Sbjct: 505 QARDIEWFINSTVNGNQYYVESIKGFDFFPQTHHVETVAVLSLKEN 550


>gi|271968013|ref|YP_003342209.1| 23S rRNA (uracil-5-)-methyltransferase [Streptosporangium roseum
           DSM 43021]
 gi|270511188|gb|ACZ89466.1| 23S rRNA (uracil-5-)-methyltransferase [Streptosporangium roseum
           DSM 43021]
          Length = 415

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 136/366 (37%), Gaps = 53/366 (14%)

Query: 11  EQQLAEKVDRLRQMMLAF------QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           + Q   K D + + +          V        + + +R R +F +  +G      +  
Sbjct: 86  DAQRLLKTDVVAEQLKRLAGIEWKGVVEEVPGAPDGLGWRTRVQFAVDREG---VLGLRR 142

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            ++ +   +D  +     +  +  E+M                ++  + S + I + +  
Sbjct: 143 HRSHDIEPLDACLIAHPEVENVGAEVM----------------NWRNASSVEVIASSVGE 186

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + +  A R         L          G+   T++   R+++ ER+        ++   
Sbjct: 187 QAVVVAPRPRRTVAVPDLDTSVAVFVDEGKGR-TRVVHGRNHLTERVGDRD----FQVTG 241

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIA 240
           + F Q + G    +L  VL       G+  L+LYCG G F+  LA        V  VE  
Sbjct: 242 SGFWQVHPGAAATLLATVLEFAAPQPGEWALDLYCGVGLFAAGLAEAVGPEGAVFGVESE 301

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +V  A  N+    +   +  R   +        ER                 + VDPP
Sbjct: 302 AVAVRDAERNLR--DLPQARFARGRVENALDRFGIERA--------------DLVVVDPP 345

Query: 301 RSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHME 357
           R+GL    V  V       I+Y+SC+P +L RD++ L+   +++  L  FD FP T H+E
Sbjct: 346 RAGLGREVVDRVATLQAGRIVYVSCDPATLARDIAWLADHGYSLADLRAFDAFPMTHHVE 405

Query: 358 CGVLLV 363
           C  LLV
Sbjct: 406 CVALLV 411


>gi|68475067|ref|XP_718419.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
 gi|68475604|ref|XP_718150.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
 gi|46439906|gb|EAK99218.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
 gi|46440184|gb|EAK99493.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
          Length = 551

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 146/406 (35%), Gaps = 66/406 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHI 51
                  +Y+QQLA K   +      F          P +   +  P   +YR +   H 
Sbjct: 171 GCQFQNIEYQQQLAIKKQTIINAYDYFAPKLVSQKLLPEVLPTQESPLTYNYRTKLTPHF 230

Query: 52  WHDGDDLYHIM-----FDQQTKER--------------MRIDYFMPGSLLINALMIEMMA 92
           +         +         +K R              + I+    G+ +IN  +     
Sbjct: 231 YIPNKKTGKDLPCPPNLGIASKGRPTWRKSDFGPEGTNIDIEECNIGTKIINQGL----- 285

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
                     + F  +Y+        +     ++L +        + +     K +++L 
Sbjct: 286 ------ANERRRFNTEYVKYSKGATFLLREDTKVLQEDTVIGPGSVDENGQVSKIEVELE 339

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGI 209
                 K C+ +    + +       I+      F Q N  I   ++++V   L+ ++  
Sbjct: 340 DNTKLVKTCVTQ--TRQIVQEYINGYIFEFSAGEFFQNNNSILPIVIDYVRSNLSLSEDQ 397

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG+G FS+  + +  +V+ VEI+  S+  A+ N   N++ N   +   ++E 
Sbjct: 398 PNYLVDAYCGSGLFSITCSSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEI 457

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
             ++                    ++ +DPPR G DD  +  +  Y    I+YISCN  S
Sbjct: 458 FASID-------------TPNNQTSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHS 504

Query: 328 LCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             RD+            + +E +  FD FP T H+E   +L  K +
Sbjct: 505 QARDIEWFINSTVNGNQYYVESIKGFDFFPQTHHVETVAVLSLKEN 550


>gi|151941596|gb|EDN59959.1| tRNA methyltransferase [Saccharomyces cerevisiae YJM789]
          Length = 602

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 147/393 (37%), Gaps = 51/393 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHIWHDGDDLY 59
           Y+ QL  K   +      F          P      + P    YR +   H         
Sbjct: 222 YDDQLELKRKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLQFGYRTKITPHFDMPKRKQK 281

Query: 60  HIM------FDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLL--RAKLFQIDYL 110
            +       F Q+ + + R D    G    I  +   ++AT  L   L    + F+ ++ 
Sbjct: 282 ELTVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERRKFEQEFK 341

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-ICLDRDYVD- 168
             +    I+      +LD +         +A       I  +   +K   + L +  V  
Sbjct: 342 NYKKGATILLRENTTILDPSKPTLEQLTEEASRDENGDISYVEVEDKKNNVRLAKTCVTN 401

Query: 169 --ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGD------LLELYCG 219
             + +T       +      F Q N  I   + ++V        +GD      L++ YCG
Sbjct: 402 PRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCG 461

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           +G FS+  ++  D+V+ VEI+  SV  A  N  AN V N + +   +++  +++    E 
Sbjct: 462 SGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFESIDTPSE- 520

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-- 335
                         ++ +DPPR G D+  +  + AY    I+YISCN  S  RD+     
Sbjct: 521 ------------NTSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLK 568

Query: 336 ----STTHTIERLALFDQFPYTRHMECGVLLVR 364
                + + IE +  FD FP T H+E   ++ R
Sbjct: 569 ETENGSAYQIESIRGFDFFPQTHHVESVCIMKR 601


>gi|261326189|emb|CBH09015.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 559

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/424 (19%), Positives = 143/424 (33%), Gaps = 78/424 (18%)

Query: 11  EQQLAEKVDRLRQMMLAFQVP---NLQ-----IFRSEPI-HYRMRAEFHIWHD------- 54
           E+QL  K +   Q+M A  +      +     I  S     YR   +F            
Sbjct: 146 EEQLQRKKEHCLQVMRAITLGGGTEYEKLFTGIHPSPHQTGYRNHVQFTFGFTEAGEPTI 205

Query: 55  ---GDDLYHIMFDQQTKERMRIDYFMPGSLLINALM--------------IEMMATIRLE 97
                 +   ++  ++     I+   P + L+   +              +E+   I+ E
Sbjct: 206 GFLKGSVIDGIYAVESVLEKDIETVNPLAKLVADAVMTVYHLFKPLEKGGLEVYDKIKEE 265

Query: 98  PLLRAKLFQIDYL----------TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKY 147
              R    + + L          T    + IV  +  +L+     E   +   A H +  
Sbjct: 266 GFWRRLQVRHNVLGEVMVDAEMDTESVAEDIVASVKAQLVAALQGETLRKKLCAAHGKDT 325

Query: 148 -QIQLIGRANKT----------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             I  +   + T          +  L   +    LT     L +     SF Q N     
Sbjct: 326 ANIVSVQYHHGTGMNPAPPEAPRHVL---FGSATLTEHLLGLQFELSPTSFFQVNTAGME 382

Query: 197 HML-EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +L E V  A    +  LL+L CG G   + LA+H  RV+ +E+ + +V  AR N   N 
Sbjct: 383 LLLRETVAVAELTPETTLLDLCCGTGTIGIALAKHVKRVIGIELVESAVRDARLNAERNG 442

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA- 314
           V N        +    ++  +       DI           +DPPR+G+    +  ++  
Sbjct: 443 VRNATFNCGRVEHLLPSVISQLSPEDRMDI--------VAILDPPRAGVTPTVLKWIRGT 494

Query: 315 --YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
                ++YISC   +L RD   L+             +      D FP+T H+E   +L 
Sbjct: 495 ATIRRLVYISCEQKALQRDCPPLTKPATKAYRESPFNVVAGFAIDMFPHTPHVEMVAVLS 554

Query: 364 RKPS 367
           R  S
Sbjct: 555 RSNS 558


>gi|213029731|ref|ZP_03344178.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 367

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 125/378 (33%), Gaps = 45/378 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFPYTRHME 357
            I+R+ LFD FP+T H E
Sbjct: 350 RIQRVQLFDMFPHTAHYE 367


>gi|241948165|ref|XP_002416805.1| tRNA methyltransferase, putative; trna
           (uracil-5-)-methyltransferase, putative;
           trna(m5u54)methyltransferase, putative [Candida
           dubliniensis CD36]
 gi|223640143|emb|CAX44390.1| tRNA methyltransferase, putative [Candida dubliniensis CD36]
          Length = 552

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 143/404 (35%), Gaps = 66/404 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHI 51
                   Y+QQLA K   +      F          P +   +  P   +YR +   H 
Sbjct: 172 GCQFQNIDYQQQLAIKKQTIINAYDHFAPKLVSHKLLPEILPTQESPLTYNYRTKLTPHF 231

Query: 52  WHDGDDLYHIM-----FDQQTKER--------------MRIDYFMPGSLLINALMIEMMA 92
           +         +         +K R              + I+    G+ +IN  +     
Sbjct: 232 YIPNKKTGKDLPCPPNLGIASKGRPTWRKSDFGPEGTNIDIEECNIGTKIINQGL----- 286

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
                     + F  +Y+        +     ++L +        + +     K +++L 
Sbjct: 287 ------ANERRRFNTEYVKYSKGATFLLREDTKVLQEDTVLGEGSVDENGQVSKIEVELE 340

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGI 209
                 K C+ +    + +       I+      F Q N  I   ++++V   L  ++  
Sbjct: 341 DNTKLVKTCVTK--TRQIVQEYINGYIFEFSAGEFFQNNNSILPIVIDYVRSNLPLSEDQ 398

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG+G FS+  + +  +V+ VEI+  S+  A+ N   N++ N   +   ++E 
Sbjct: 399 PNYLVDAYCGSGLFSITCSSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEI 458

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
             ++                    ++ +DPPR G DD  +  +  Y    I+YISCN  S
Sbjct: 459 FASID-------------TPNNQTSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHS 505

Query: 328 LCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             RD+            + +E +  FD FP T H+E   +L  K
Sbjct: 506 QARDIEWFINNTANGNQYYVESIKGFDFFPQTHHVETVAVLSLK 549


>gi|297708304|ref|XP_002830909.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
           homolog A-like [Pongo abelii]
          Length = 625

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 131/421 (31%), Gaps = 76/421 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 179 PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQTE 238

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 239 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 298

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDALHA--- 144
                           Q+   TS+  QA+    +H  +L  +   E    L     A   
Sbjct: 299 TPYSAYDPETYTGHWKQLTVRTSRRRQAMAIAYFHPQKLSPEELAELKASLAQHFTAGPG 358

Query: 145 -RKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                  L       +       + L+    D  +      L +R   ++F Q N     
Sbjct: 359 RASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +    +   G  +L++ CG     L LAR   RV+ VE+   +VE AR N   N 
Sbjct: 419 VLYTVIQDWAQRDAGSTVLDVCCGFRAIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 478

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV+     +++   A+        L              +DPPR+GL    +  ++  
Sbjct: 479 LSNVEFHCGRAEDLVPALVSRLASQHL-----------VAILDPPRAGLHSKVILAIRRA 527

Query: 316 ---PHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
                +LY+SCNP +   +   L                +    D FP T H E  +L  
Sbjct: 528 ENLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGIPFRPVKAVAVDLFPQTPHCEMLILFE 587

Query: 364 R 364
           R
Sbjct: 588 R 588


>gi|119479021|ref|XP_001259539.1| tRNA(m5U54)methyltransferase [Neosartorya fischeri NRRL 181]
 gi|119407693|gb|EAW17642.1| tRNA(m5U54)methyltransferase [Neosartorya fischeri NRRL 181]
          Length = 531

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 141/399 (35%), Gaps = 48/399 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR------SEPIHYRMRAEFHIWHDG 55
              L +  YE QLA K   + +    F     ++          P+ Y  R +    H  
Sbjct: 143 GCQLQMMSYEDQLAHKKRIVEKAYANFSGLIPELIPAVEGTFPSPLQYGYRTKLT-PHFT 201

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINA-LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
               H    ++    +  +    G    N  + +++        ++R  L       + +
Sbjct: 202 APGGHSAAKRRKSGEVPTEVPPIGFTYKNRRMDVDIEDCPLGTDIVRRGLRSERKRVADN 261

Query: 115 DQAIVTLIYHRLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLDRD-YVDERL 171
                      L+ ++ R         +A   +K         +   I ++RD Y++E+ 
Sbjct: 262 LHKYTKKGATLLMRESTRRIPKDSAEAEAGAVQKEGENPPESESGDVIRIERDNYIEEKR 321

Query: 172 TV---------AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--------LL 214
            V              I+     +F Q N  I     E++         +        LL
Sbjct: 322 CVTDNNATSVEYIDDYIFTNKAGAFFQNNNSILSGFTEYIRQHAFPKGNEQDPKPIKYLL 381

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + Y G+G F++ L+  F   L V++A  S+ +AR N  AN++ N       +    + + 
Sbjct: 382 DAYSGSGLFTITLSPLFKSSLGVDVAADSIASARENARANNLPNTGFAAADAATLFKNVP 441

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332
              E                + +DPPR G  D  +  +       ++Y+SCN  +  RD+
Sbjct: 442 YPPE-------------QTLLVIDPPRKGCSDDFLRQLLTYGPRRVVYVSCNVHTQARDV 488

Query: 333 SILSTT-----HTIERLALFDQFPYTRHMECGVLLVRKP 366
           +++        + IE +  FD FP T H+E   +L + P
Sbjct: 489 AVMVQGDMNSRYEIESIRGFDFFPQTGHVEGVAILNKVP 527


>gi|291518465|emb|CBK73686.1| 23S rRNA m(5)U-1939 methyltransferase [Butyrivibrio fibrisolvens
           16/4]
          Length = 428

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 121/365 (33%), Gaps = 56/365 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEP--IHYRMRAEFHIW-- 52
             T     Y++QL  K   +  +M      +      +  +S P    YR + EF     
Sbjct: 81  GCTYQSLPYDKQLDIKEGMIHDLMAPVIGEDVWNATYEGIKSSPKQFEYRNKMEFSFGDE 140

Query: 53  HDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINAL-----------MIEMMATIRLEPLL 100
                L   M  + +  + + +D        +  +                     E  L
Sbjct: 141 VKDGPLTLGMHKKGSFYDVVTVDGCQIIDADMRRVLAITLEYFANAKQPYYRKNTHEGYL 200

Query: 101 RAKLFQIDYLTSQSDQAIVTL-----IYHRLLDDAWRE-------CAIRLRDALHARKYQ 148
           R  L +    T +    +VT      IY   L   W++          +L   LH +  +
Sbjct: 201 RHLLVRKAAKTGEILVDLVTSTQISSIYEIALLAGWKQALLDCPDWEGKLTGILHTKNDR 260

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK- 207
              +     T+I   +D+  E L      L +     SF Q N+     +          
Sbjct: 261 AADVVADEGTEILYGQDWFKEELL----GLSFTISPFSFFQTNSLGAEVLYSTARDFIST 316

Query: 208 -GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
                ++ +LY G G  + V+A     V  VEI   +VEAA+ N   N ++N   +    
Sbjct: 317 GADGAEVYDLYSGTGTIAQVIAPAAKHVTGVEIIAEAVEAAKENAKLNGLDNCDFIAGDV 376

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
                          LK +D  + +   I +DPPR G+    +  +       ++YISC 
Sbjct: 377 ---------------LKVLDDITEKPDYIILDPPRDGIHPKALDKIIDYGVDSLVYISCK 421

Query: 325 PDSLC 329
           P SL 
Sbjct: 422 PTSLA 426


>gi|332017236|gb|EGI58019.1| tRNA (uracil-5-)-methyltransferase-like protein A [Acromyrmex
           echinatior]
          Length = 562

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/429 (16%), Positives = 144/429 (33%), Gaps = 84/429 (19%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL--------------QIFRSEP---------- 40
           L    Y  QL  K   ++ +++      L              +++   P          
Sbjct: 143 LWNMPYSDQLEFKQKEMKSILIKIGQQILTESKTLTEWINSQKKLYDGLPCKLQNILSAD 202

Query: 41  --IHYRMRAEFHIWHDGDDLYHIM------FDQQTKERMRID------YFMPGSLLINAL 86
               YR + EF +  D +    ++      +   +     ID        M  ++ I   
Sbjct: 203 VTEAYRNKCEFTVGKDSEQSKIMIGFRLSTYASGSTAVGPIDDLCHIPENMKIAIKILET 262

Query: 87  MIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------ 139
            I         P+  +    Q+   T++++  ++ +  H    ++     ++ +      
Sbjct: 263 FIRESNLEPFNPVDHSGYWRQVTARTTRANHLMLIVGIHPQNLNSNELDMLKSQLKIFFE 322

Query: 140 --DALHARKYQIQLIGRANKTK---------ICLDRDYVDERLTVAGRTLIYRQIENSFT 188
               + A    +       K+               +Y++E L      + +R    +F 
Sbjct: 323 TGKGVDAHVTSLYFQTIDKKSIGGESSDTLYHINGTEYIEETLL----GMKFRVSPQAFF 378

Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q N      + +  +   +      LL++ CG G   L  +++   VL VEI   +++ A
Sbjct: 379 QVNTLGAEVLYKAAIDLAEPTMDTALLDVCCGTGTIGLCFSKYCGEVLGVEIIPDAIQDA 438

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + N   N + N +     +++             L  I   +    T  VDPPR+GL   
Sbjct: 439 KENAVKNEIKNCEFFVGKAEDIL-----------LPIIQRTTKSNITAIVDPPRAGLHQK 487

Query: 308 TVGMVQAYP---HILYISCNPDSLCRDL---------SILSTTHTIERLALFDQFPYTRH 355
            +  ++       ++YISC+P +  ++L           L       +    D FP+T+H
Sbjct: 488 ALLTLRKSKKLNRLVYISCDPRAAMKNLIDLARPSSKQYLGEPLVPVKAIAVDMFPHTKH 547

Query: 356 MECGVLLVR 364
            E  + L R
Sbjct: 548 CELILCLER 556


>gi|149197270|ref|ZP_01874322.1| RNA methyltransferase-like protein [Lentisphaera araneosa HTCC2155]
 gi|149139816|gb|EDM28217.1| RNA methyltransferase-like protein [Lentisphaera araneosa HTCC2155]
          Length = 409

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 150/383 (39%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQM------MLAFQVPNLQIFRSE-PIHYRMRAEFHIWHD 54
             +L    YEQQL  K   L ++      M +     ++   S     YR R +F +  +
Sbjct: 44  GCSLQQHSYEQQLEIKKQALERLVRETPGMSSLAKLEVEAVASARDYKYRQRMDFIVTPE 103

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK----LFQIDYL 110
           G         +   E          +  I A  + +   + LE   + K    L  I   
Sbjct: 104 GSGQRRCDGQKGIVELNECSLVEDENYAIYAKTLGLSREVGLEAYDQNKYYGCLRYIIIR 163

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIR--LRDALHARKYQIQLIGRAN---KTKICLDRD 165
            ++S Q +V+L+     D+A  E   +  L + + +  + +      +   + +    ++
Sbjct: 164 RTRSGQQLVSLLTTSSADEAKLEQIAQKLLDEGVQSVYWNVNDNRLDDSLGECRKFWGQE 223

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           ++ E L   GR  I      +F Q N  +       V    K  Q   + +LY G     
Sbjct: 224 FITENLL--GRDFI--LGPLTFFQANHDVASAAYTSVRNFIKECQPKKIHDLYSGTCTMP 279

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           ++     D V AVE    +V  A  N+ AN + NVK +     EF +    E EF+ L  
Sbjct: 280 VIFGDLVDSVTAVENFPENVRMAEKNLKANGIENVKFIEQDVAEFLKQSDLEMEFSVL-- 337

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                        +PPR G+ +  +  +   A  ++ Y+SC+P SL  DL IL   +   
Sbjct: 338 -------------NPPRKGMHEQALRRILELAPDNLAYLSCSPRSLLEDLGILFREYKPL 384

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
           ++ LFD FP T H E  VLL +K
Sbjct: 385 KIQLFDMFPQTEHFETLVLLTKK 407


>gi|330897094|gb|EGH28572.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 230

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 63/242 (26%), Positives = 99/242 (40%), Gaps = 18/242 (7%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R            L+        Q+ L G           D +  RL      L +R   
Sbjct: 1   RHTAPLAEADLALLQAFCSRHGAQLWLHGDGEPQPASPG-DTLGYRLEPWNLHLAWR--P 57

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q NA +N  M+E  +      + + +++L+CG GNF+L LA     V+AVE     
Sbjct: 58  GDFIQVNAAVNTAMIEQAMQWLAPAKDERVMDLFCGLGNFALPLAGLAREVVAVEGVATM 117

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           VE A  N  +N ++NV+  +    +             L  +D  +  F  + +DPPR G
Sbjct: 118 VERAAVNAMSNDLHNVQFFQADLSQ------------PLTHVDWAAEGFSAVLLDPPRDG 165

Query: 304 LDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
             +    + +     +LY+SCNP +L RD   L    + ++R  + D FP T H+E   L
Sbjct: 166 AFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEAMAL 225

Query: 362 LV 363
             
Sbjct: 226 FE 227


>gi|14591077|ref|NP_143152.1| hypothetical protein PH1259 [Pyrococcus horikoshii OT3]
 gi|50401322|sp|O58994|Y1259_PYRHO RecName: Full=Uncharacterized RNA methyltransferase PH1259
 gi|3257678|dbj|BAA30361.1| 412aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 412

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 144/383 (37%), Gaps = 59/383 (15%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLY 59
            G L    +Y +QL  K     ++         +I  S    ++R  + F I  +G    
Sbjct: 70  GGCLWQGLRYREQLKLK----EEIFKRITGIEAEIKGSPRIWYFRNISNFIITVNGIGFK 125

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL---------LRAKLFQIDYL 110
                   K  + I      S      +  +   +R   L         +     +    
Sbjct: 126 EFGMP---KTVVNIRECPIFSERTPKYLKALKDFLRESNLKPWNWREGDVHYLQVREGKF 182

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK------ICLDR 164
           T    + +V +I H  L+         L +A +        +    K        + L  
Sbjct: 183 TG---EVMVNIIAHVPLN-----YREALMEAFNFADSIYWSLKADKKDDPRGFPTLVLGN 234

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           + + E++      + Y    + F Q N+     +L+ V    +G +  +L+LY G G  S
Sbjct: 235 EVIREKV----EGITYLIHPSVFFQTNSYALPLLLKSVEKFCEGSK--VLDLYSGIGTLS 288

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA+    V  VE+   SVE A+ +   N + N   ++  ++                 
Sbjct: 289 LYLAKRGFEVTGVEVNGTSVEMAKRSAEINSI-NATFIQGKAE----------------- 330

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIE 342
            D     ++T+ VDPPR GL + +  +V+  P+ ++Y+SCNP     D    LS  + ++
Sbjct: 331 -DAELEGYETLIVDPPRKGLKEFSRRIVKKGPNTLIYVSCNPLRFILDYRNYLSEAYKVD 389

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
              L D FP+T H+E  + LVR+
Sbjct: 390 DALLIDMFPHTPHIEAVIKLVRR 412


>gi|313104036|sp|A4QP75|TRM2B_DANRE RecName: Full=tRNA (uracil-5-)-methyltransferase homolog-B;
           AltName: Full=TRM2 homolog B
 gi|220676971|emb|CAX12082.1| novel protein (zgc:162982) [Danio rerio]
          Length = 480

 Score =  190 bits (482), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 143/419 (34%), Gaps = 80/419 (19%)

Query: 10  YEQQLAEKVDRLRQMMLA----------------FQVPNLQIFRSEPI-HYRMRAEFHI- 51
           YE QL  K +  ++++L                    P L I  S     YR ++ F + 
Sbjct: 78  YEDQLQWKYEHQKKILLKMMKELSQDPTRAFSDHLNFPLLPIVASPVRDGYRNKSTFSVN 137

Query: 52  -WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR--------- 101
              DG+      +    K    +   +    L++      M     E  +R         
Sbjct: 138 KGIDGNPKTLGFYIGTGKAGNIV--CVHADHLLSIPSKHKMVARCYEDFIRLSPLRPCIL 195

Query: 102 ----AKLFQIDYLTSQSDQAIVTLIYHRL-LDDAWRECAIRLR--------------DAL 142
                   +I   T+ +   +  + +H   L     +                    D+L
Sbjct: 196 FDDGGHWREITIRTNSTGHTMAIVYFHPQSLTPEETDIHKAALVEYFTQGPGAICQLDSL 255

Query: 143 HARKYQIQLIGRANKT-KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           + ++  +          ++   + ++ E +        +R   +SF Q N      + + 
Sbjct: 256 YFQETTMTRCSHEQSQYQLLYGQTHIYEEVL----GFKFRISPDSFFQVNREAAEALYKT 311

Query: 202 VLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V   ++  + G LL++ CG G   + L+   +RV+ +E+ + +VE A++N A N V N +
Sbjct: 312 VAELSQPCVGGTLLDVCCGTGAIGISLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCE 371

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPH 317
            +   ++     +             + S    T  V+P R+GL    V  ++   A   
Sbjct: 372 FLAGKAEVVLPDLMG----------SLSSDGGLTAVVNPSRAGLHYRVVRALRNHSAIRR 421

Query: 318 ILYISCNPDSLC-RDLSILS-----------TTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++YISC PD    R+   L                       D FP+T H E  ++  R
Sbjct: 422 LVYISCKPDGEAMRNFRELCCSVGLVRRITGEAFKPVVAVPVDLFPHTPHCELVLVFER 480


>gi|300087865|ref|YP_003758387.1| maf protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527598|gb|ADJ26066.1| maf protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 612

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 131/369 (35%), Gaps = 67/369 (18%)

Query: 3   GTLLID-QYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           G       Y  QL  K + +   +         N  +   +   YR  A   +    +  
Sbjct: 81  GCQYQQIDYPHQLELKRESVIDALTGHGITAPVNPAVPSPDEFGYRNHARLTVRRRANR- 139

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
                ++ T+  + ID+ +  +  +N+L+  +                            
Sbjct: 140 -FGFINRVTRRFVPIDHCLIMAEGVNSLLSALDGRCGETSQFS----------------- 181

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
                              +R  ++  ++ IQ   +     +   + +  E L       
Sbjct: 182 -------------------IRYGVNTDEFLIQPKLKNPDITVTSGQLWYHEILC----GR 218

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAV 237
            +R    +F Q N     ++ + +         + +++ Y G   F+ +LA    +V+A+
Sbjct: 219 RFRVSSPAFFQVNTPQAENLADLIGERLALTGAETIIDAYAGVATFAALLAPRVKKVIAI 278

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E +  +V+ AR NI    + NV+++   ++     +                     + +
Sbjct: 279 EESSAAVKDARVNIK--GLANVELLEARTESVLPHL---------------GKLADAVII 321

Query: 298 DPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTR 354
           DP R+G     + ++  +P   ++Y+SCNP++L RDL+ L+     IE +   D FP T 
Sbjct: 322 DPSRNGCHPGALRILNRHPASRLVYVSCNPEALGRDLATLTRGPWIIEDITPVDLFPQTY 381

Query: 355 HMECGVLLV 363
           H+E  V L 
Sbjct: 382 HVETVVTLK 390


>gi|115379583|ref|ZP_01466671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821580|ref|YP_003953938.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363410|gb|EAU62557.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394652|gb|ADO72111.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Stigmatella aurantiaca
           DW4/3-1]
          Length = 428

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 131/364 (35%), Gaps = 34/364 (9%)

Query: 11  EQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
             Q A K + +   +                +       YR R+  H            F
Sbjct: 89  PAQRAAKQEIVLSTLEHLGHLSRDQFTVRPLLVAPRDFGYRRRSVLHF----AKGALAYF 144

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
            +++ ER+ +      + ++ AL  ++     L+PL +           +     V L  
Sbjct: 145 GRRSHERVPVSECGALTPVLTALPGKL--APLLKPLAKDAEEVHLLAEGEKAAFAVMLTG 202

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
                      A      L        ++     +   L +  +   L+     +     
Sbjct: 203 QVATRHVEAAEAAVRALRLEG-----AVLVPKEGSPRLLGKPALR-SLSPLRPEVPLYLR 256

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
            ++F Q +A  NV ++   + A      D +LELY GNGNF+  LA     VL VE +  
Sbjct: 257 PDAFAQAHAEANVGLVTSAVYALAPRDTDSVLELYSGNGNFTFPLAATAASVLGVESSPV 316

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            VE A+ +     V NV+ ++  +++  Q +  E               F     DPPR+
Sbjct: 317 GVELAQRSAREGGVTNVRFIQGDARKVVQGLIGE------------GRTFDLCLADPPRT 364

Query: 303 GLDDATVGM-VQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G     + + +     ++Y++C+P SL RD + L +  +    L + D FP T H+E  +
Sbjct: 365 GAPGLALQVSLLGVKRVVYVACDPASLARDAAGLVAAGYRPVALQVVDMFPQTHHVEAVM 424

Query: 361 LLVR 364
              R
Sbjct: 425 SFER 428


>gi|193669328|ref|XP_001944973.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
           [Acyrthosiphon pisum]
          Length = 650

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/439 (16%), Positives = 155/439 (35%), Gaps = 95/439 (21%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-----------------------------QVPNLQI 35
           L    Y++QL +K + ++ +++ +                             ++  +Q 
Sbjct: 227 LYNISYDEQLIQKTNSIKNVLMDYSRRLKRIKCGQGILNWLKKQQDENNGLPCKLLEIQS 286

Query: 36  FRSEPI---HYRMRAEFHIWHDGDD------LYHIMFDQQTKERMRIDYFMPGSLLINAL 86
            + +      YR + EF I  D ++           ++Q       ID        +  +
Sbjct: 287 LKDDSEKCIGYRNKCEFTIGMDVENKEPVVGFRVGAYNQGKTSVAPIDNISNVPQRMKDV 346

Query: 87  MIEMMATIRLEPLLRAKLFQIDYLTSQSDQ------------AIVTLIYHRLLDDAWREC 134
           +      +R     +  +F  +  T    Q             ++ +++   ++++    
Sbjct: 347 VKCFQDLVRAS---KFPVFDPENYTGHWRQLTVRLSLKTEQLMLICVVHTENMEESALNS 403

Query: 135 AIRL--------------RDALHARKYQIQLIGRANK--TKICLDRDYVDERLTVAGRTL 178
             +L               D+L+ +K + +  G  N    ++   + Y+ E +    + L
Sbjct: 404 LKQLILSYFTEGAGAVCKVDSLYFQKAKKRAAGEGNSFPLELLHGQGYIVEEV----KGL 459

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
             R    SF Q N   +  + +     A+   Q  +L++ CG+G   L +A+   +V+ V
Sbjct: 460 KLRISPESFFQINTAASEILFDAAKDLASINSQTTVLDVCCGSGTIGLSIAKDCAQVIGV 519

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI + +V  A+ N   N + N       ++E           N+ +  +  +       V
Sbjct: 520 EIQEEAVNMAKLNATENGITNAIFFAGKAEEVM---------NKREFQNPENANDVVAIV 570

Query: 298 DPPRSGLDDATVGMVQAY---PHILYISCNPD---------SLCRDLSILSTTHTIERLA 345
           DPPR+GL +  + +++       ++Y+SCNP          S+    +         +  
Sbjct: 571 DPPRAGLHNKAILLLRRMTHLKRLVYMSCNPKGAMQNFLSLSMAESKTKQGAPFVPVKAV 630

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H E  V   R
Sbjct: 631 PVDMFPQTPHCELIVYFER 649


>gi|171545987|ref|NP_001116415.1| tRNA (uracil-5-)-methyltransferase homolog-B [Danio rerio]
 gi|141795408|gb|AAI39683.1| Zgc:162982 protein [Danio rerio]
          Length = 473

 Score =  190 bits (482), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 143/419 (34%), Gaps = 80/419 (19%)

Query: 10  YEQQLAEKVDRLRQMMLA----------------FQVPNLQIFRSEPI-HYRMRAEFHI- 51
           YE QL  K +  ++++L                    P L I  S     YR ++ F + 
Sbjct: 71  YEDQLQWKYEHQKKILLKMMKELSQDPTRAFSDHLNFPLLPIVASPVRDGYRNKSTFSVN 130

Query: 52  -WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR--------- 101
              DG+      +    K    +   +    L++      M     E  +R         
Sbjct: 131 KGIDGNPKTLGFYIGTGKAGNIV--CVHADHLLSIPSKHKMVARCYEDFIRLSPLRPCIL 188

Query: 102 ----AKLFQIDYLTSQSDQAIVTLIYHRL-LDDAWRECAIRLR--------------DAL 142
                   +I   T+ +   +  + +H   L     +                    D+L
Sbjct: 189 FDDGGHWREITIRTNSTGHTMAIVYFHPQSLTPEETDIHKAALVEYFTQGPGAICQLDSL 248

Query: 143 HARKYQIQLIGRANKT-KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           + ++  +          ++   + ++ E +        +R   +SF Q N      + + 
Sbjct: 249 YFQETTMTRCSHEQSQYQLLYGQTHIYEEVL----GFKFRISPDSFFQVNREAAEALYKT 304

Query: 202 VLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V   ++  + G LL++ CG G   + L+   +RV+ +E+ + +VE A++N A N V N +
Sbjct: 305 VAELSQPCVGGTLLDVCCGTGAIGISLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCE 364

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPH 317
            +   ++     +             + S    T  V+P R+GL    V  ++   A   
Sbjct: 365 FLAGKAEVVLPDLMG----------SLSSDGGLTAVVNPSRAGLHYRVVRALRNHSAIRR 414

Query: 318 ILYISCNPDSLC-RDLSILS-----------TTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++YISC PD    R+   L                       D FP+T H E  ++  R
Sbjct: 415 LVYISCKPDGEAMRNFRELCCSVGLVRRITGEAFKPVVAVPVDLFPHTPHCELVLVFER 473


>gi|42759862|ref|NP_012982.2| Trm2p [Saccharomyces cerevisiae S288c]
 gi|110825750|sp|P33753|TRM2_YEAST RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName:
           Full=Transfer RNA methyltransferase 2; AltName:
           Full=tRNA(M-5-U54)-methyltransferase
 gi|285813310|tpg|DAA09207.1| TPA: Trm2p [Saccharomyces cerevisiae S288c]
          Length = 639

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 147/393 (37%), Gaps = 51/393 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHIWHDGDDLY 59
           Y+ QL  K   +      F          P      + P    YR +   H         
Sbjct: 259 YDDQLELKRKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLQFGYRTKITPHFDMPKRKQK 318

Query: 60  HIM------FDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLL--RAKLFQIDYL 110
            +       F Q+ + + R D    G    I  +   ++AT  L   L    + F+ ++ 
Sbjct: 319 ELSVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERRKFEQEFK 378

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-ICLDRDYVD- 168
             +    I+      +LD +         +A       I  +   +K   + L +  V  
Sbjct: 379 NYKKGATILLRENTTILDPSKPTLEQLTEEASRDENGDISYVEVEDKKNNVRLAKTCVTN 438

Query: 169 --ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGD------LLELYCG 219
             + +T       +      F Q N  I   + ++V        +GD      L++ YCG
Sbjct: 439 PRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCG 498

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           +G FS+  ++  D+V+ VEI+  SV  A  N  AN V N + +   +++  +++    E 
Sbjct: 499 SGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFESIDTPSE- 557

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-- 335
                         ++ +DPPR G D+  +  + AY    I+YISCN  S  RD+     
Sbjct: 558 ------------NTSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLK 605

Query: 336 ----STTHTIERLALFDQFPYTRHMECGVLLVR 364
                + H IE +  FD FP T H+E   ++ R
Sbjct: 606 ETENGSAHQIESIRGFDFFPQTHHVESVCIMKR 638


>gi|9755890|emb|CAC01942.1| tRNA(m5U54)methyltransferase [Saccharomyces cerevisiae]
          Length = 569

 Score =  189 bits (481), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 147/393 (37%), Gaps = 51/393 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHIWHDGDDLY 59
           Y+ QL  K   +      F          P      + P    YR +   H         
Sbjct: 189 YDDQLELKRKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLQFGYRTKITPHFDMPKRKQK 248

Query: 60  HIM------FDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLL--RAKLFQIDYL 110
            +       F Q+ + + R D    G    I  +   ++AT  L   L    + F+ ++ 
Sbjct: 249 ELSVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERRKFEQEFK 308

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-ICLDRDYVD- 168
             +    I+      +LD +         +A       I  +   +K   + L +  V  
Sbjct: 309 NYKKGATILLRENTTILDPSKPTLEQLTEEASRDENGDISYVEVEDKKNNVRLAKTCVTN 368

Query: 169 --ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGD------LLELYCG 219
             + +T       +      F Q N  I   + ++V        +GD      L++ YCG
Sbjct: 369 PRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCG 428

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           +G FS+  ++  D+V+ VEI+  SV  A  N  AN V N + +   +++  +++    E 
Sbjct: 429 SGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFESIDTPSE- 487

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-- 335
                         ++ +DPPR G D+  +  + AY    I+YISCN  S  RD+     
Sbjct: 488 ------------NTSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLK 535

Query: 336 ----STTHTIERLALFDQFPYTRHMECGVLLVR 364
                + H IE +  FD FP T H+E   ++ R
Sbjct: 536 ETENGSAHQIESIRGFDFFPQTHHVESVCIMKR 568


>gi|70997497|ref|XP_753495.1| tRNA(m5U54)methyltransferase [Aspergillus fumigatus Af293]
 gi|66851131|gb|EAL91457.1| tRNA(m5U54)methyltransferase [Aspergillus fumigatus Af293]
 gi|159126776|gb|EDP51892.1| tRNA(m5U54)methyltransferase [Aspergillus fumigatus A1163]
          Length = 578

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 142/399 (35%), Gaps = 48/399 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR------SEPIHYRMRAEFHIWHDG 55
              L +  YE QLA K   + +    F     ++          P+ Y  R +    H  
Sbjct: 190 GCQLQMMSYEDQLAHKKRIVEKAYANFSGLIPELIPAVEDTFPSPLQYGYRTKLT-PHFT 248

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINA-LMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
               H    ++    +  +    G    N  + +++        ++R  L       +++
Sbjct: 249 APGGHSAAKRRKSGEVPTEVPPIGFTYKNRRMDMDIEDCPLGTDIVRRGLRSERKRVAEN 308

Query: 115 DQAIVTLIYHRLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLDRD-YVDERL 171
                      L+ ++ R         +A   +K         +   I ++RD Y++E+ 
Sbjct: 309 LHKYTKKGATLLMRESTRRIPKDSAEAEAGAVQKEGDNPPESESGDVIRIERDNYIEEKR 368

Query: 172 TV---------AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--------LL 214
            V              I+     +F Q N  I     E++         +        LL
Sbjct: 369 CVTDNNATSVEYIDDYIFTNKAGAFFQNNNSILSGFTEYIRQHAFPKGNEQDPKPIKYLL 428

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + Y G+G F++ L+  F   L V++A  S+ +AR N  AN++ N       +    + + 
Sbjct: 429 DAYSGSGLFTITLSPLFKSSLGVDVAADSIASARENARANNLPNTGFAAADAATLFKNVP 488

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332
              E                + +DPPR G  D  +  +       ++Y+SCN  +  RD+
Sbjct: 489 YPPE-------------QTLLVIDPPRKGCSDDFLRQLLTYGPRRVVYVSCNVHTQARDV 535

Query: 333 SILSTT-----HTIERLALFDQFPYTRHMECGVLLVRKP 366
           +++        + IE +  FD FP T H+E   +L + P
Sbjct: 536 AVMVQGDMNSRYEIESIRGFDFFPQTGHVEGVAILNKVP 574


>gi|311271117|ref|XP_001927820.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Sus
           scrofa]
          Length = 621

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 134/423 (31%), Gaps = 80/423 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  +  P    
Sbjct: 175 PYAEQLERKRLECEQVLQKLAKEIGNTNRALLPWLLSQRQKHNKACCMLEGVKPSPQQTE 234

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 235 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPTATKQVVKAFQEFIRS 294

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
                           Q+   TS+  QA+    +H        E    L+ +L       
Sbjct: 295 TPYSAYDPETYSGHWKQLTVRTSRRGQAMAIAYFHPQKLS--PEELAGLKASLAQHFTTG 352

Query: 150 QLIGRA-----------NKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
                             KT     + L+    D+ +      L +R   ++F Q N   
Sbjct: 353 PGKASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDQCIYEDLLGLTFRISPHAFFQVNTPA 412

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
              +   +    +   G  +L++ CG G   L LAR   RV+ VE+++ +V+ AR N   
Sbjct: 413 AEVLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALARKVKRVVGVELSQEAVDDARVNALD 472

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++NV+     +++    +       +L              +DPPR+GL    +  V+
Sbjct: 473 NELSNVEFHCGRAEDLVPPLVSRLASQQL-----------VAILDPPRAGLHSKVILAVR 521

Query: 314 AY---PHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVL 361
                  +LY+SC+P +   +   L                +    D FP T H E  +L
Sbjct: 522 RAENLRRLLYVSCSPRAAMGNFVDLCRAPSNRVKGMPFRPVKAVAVDLFPQTPHCEMLIL 581

Query: 362 LVR 364
             R
Sbjct: 582 FER 584


>gi|315605794|ref|ZP_07880826.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312492|gb|EFU60577.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 387

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 134/390 (34%), Gaps = 45/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML----AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
           S +LL   Y++QLA+K   +   +     A  +  L    SE   +R   +  +      
Sbjct: 13  SCSLLPLPYDRQLADKEHAVAGTLSLVPGAGNIRWLTPASSEQSGFRTSVKLVVGGTRRR 72

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYL 110
               +     +  + +         IN     +   I          P  R +L  I   
Sbjct: 73  PTLGVLGPD-RRGVDLPGCPIQHPAINRATPGLKRFIRSLNLTPYDVPARRGELKNILIT 131

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
                + ++  +       +    A+ L   L    + +          I    D   E 
Sbjct: 132 VGAGQRLMIRFVLRTRDRVSDIRSALPLLRDLVPAAHVVTANIHPTHEAIVEGPD---EI 188

Query: 171 LTVAGRTLIYRQ-----IENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCG 219
           +    RTL            SF Q NA +   + E      +    D      L +LYCG
Sbjct: 189 ILTRARTLPLTVEGLALGPRSFAQTNARVAAALYEQASRWARLPLPDGRVPEGLWDLYCG 248

Query: 220 NGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRE 276
            G F+L  AR     V  VE++  ++ +A        +     + +   +  + +A    
Sbjct: 249 VGGFALACARGGIPHVTGVEVSAGAISSAITAARTAGLRRDEARFICDDATAWARAQPA- 307

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                       S     I V+PPR G+       +     P ++Y SCNP SL +DL++
Sbjct: 308 ------------STVPDVIVVNPPRRGIGPDLAAYLNECGAPRVIYSSCNPASLAQDLTV 355

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +     +E   +FD FP+T H+E  VLL R
Sbjct: 356 MPALRPVEG-RVFDMFPHTSHVEAAVLLER 384


>gi|289207775|ref|YP_003459841.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. K90mix]
 gi|288943406|gb|ADC71105.1| RNA methyltransferase, TrmA family [Thioalkalivibrio sp. K90mix]
          Length = 452

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 134/384 (34%), Gaps = 31/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWH--DG 55
              L     E Q A K   L   +        +          + YR  A     +    
Sbjct: 81  GCKLQHASIETQRAIKEQALFDALERIGHVTPEARFEPLTDTTLGYRRTARLGAKYVPKK 140

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++ +     + +       +   +  +   I      R +L QI+      +
Sbjct: 141 GGVLVGFRERGSPYLAEMTHCEVLHPAVGHRIRALRELIGGLEA-RDRLPQIEVAVDDDE 199

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  +     R LD      + RL     A   Q+ L     +T   L             
Sbjct: 200 RVALIF---RNLDPLSAADSARLSAWAEAEGIQVYLQPGGPETVEALAGPIEPLVYRHPD 256

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD-- 232
             +    +   F Q +AGIN  M+   L A     G  +L+L+CG GNF+L LAR     
Sbjct: 257 YGVSVPFMPTDFIQVHAGINRKMVPQALEALDLQPGQRVLDLFCGLGNFTLPLARSVSDG 316

Query: 233 ----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
                V+ VE+    +  AR N     + N +  R    +             LK+    
Sbjct: 317 EVPGEVVGVEVDDAMLARARANARDQGIANTRYERADLDDVEA----------LKNAGWL 366

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL--STTHTIERLA 345
             R+  + +DPPR+G       +  Q    ++Y+SCNP +L RD   L     + +ER  
Sbjct: 367 VERYDRVLLDPPRTGAAAVIEALAPQRIERMVYVSCNPATLARDAERLVHHHGYRLERAG 426

Query: 346 LFDQFPYTRHMECGVLLVR-KPSG 368
           + D FP+T H+E   +  R +P G
Sbjct: 427 IMDMFPHTAHVESMAVFRRDEPRG 450


>gi|45185942|ref|NP_983658.1| ACR256Cp [Ashbya gossypii ATCC 10895]
 gi|44981732|gb|AAS51482.1| ACR256Cp [Ashbya gossypii ATCC 10895]
          Length = 592

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 132/406 (32%), Gaps = 67/406 (16%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQV----------PNLQIFRSEPIHYRMRA--- 47
           SG       Y+QQL  K   +      F                +       YR +    
Sbjct: 210 SGCQYQFLTYDQQLQLKQRTVSNAFKFFAPQLLAEGLLPTVGETVASPLQFAYRTKLTPH 269

Query: 48  --------------EFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT 93
                                G   +       +   + I+    G+ +I   M    A 
Sbjct: 270 FDMPRKVKQLETRPPLGFGQKGRPTWRHSDAGGSAAILDIEDCPIGTEIIRRGMRNERAR 329

Query: 94  IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-LI 152
                      F+  +   +    I+   + ++L+ A          +      Q+  L 
Sbjct: 330 -----------FEETFKNYKKGATILLREHTKVLNPAAPVEEQLDPGSCDPVSGQVSHLR 378

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT------ 206
             A+   + L      + +T       +      F Q N+ I   +  +V          
Sbjct: 379 VDADPPLLKLCTTNTRQIVTEYVDGCTFEFSAGEFFQNNSSILPVVTAYVRDNVRIPNSG 438

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
              +  L++ YCG+G FS+  ++  DRV+ VE++  SV  A  N   N V N   +   +
Sbjct: 439 PEDKHYLVDAYCGSGLFSITASKGVDRVIGVEVSADSVAFAERNAKTNGVTNCTFIVGKA 498

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCN 324
           ++   ++                    ++ +DPPR G DD  +  +  Y    I+YISCN
Sbjct: 499 EKIFASID-------------TPCDRTSVILDPPRKGCDDVFLKQLAEYNPARIVYISCN 545

Query: 325 PDSLCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
             S  RD+            + ++ +  FD FP T H+E   +L R
Sbjct: 546 VHSQARDVQYFLKETPNGARYKVDSIRGFDFFPQTHHVEGVCVLSR 591


>gi|301154691|emb|CBW14154.1| 23S rRNA m(5)U747 methyltransferase [Haemophilus parainfluenzae
           T3T1]
          Length = 391

 Score =  189 bits (479), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 140/394 (35%), Gaps = 52/394 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   YEQQLA+K + L++ +      +L     F S    +R +A+  +    +  
Sbjct: 14  SCQWLEMPYEQQLAKKEEHLKKQLAKLDCDDLIWHPPFYSSESAFRNKAKMVVSGAVERP 73

Query: 59  YHIMF--DQQTKERMRI-----------DYFMPGSLLINALMIEMMATIRLEPLLRAKLF 105
              +       +  + +           + F      I    +      + +  L+  L 
Sbjct: 74  ILGILQDPNDPQSAVDLCDCPLYPQRFAELFPILKDFIGRAGLVPYNVAKQKGELKYILL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA---RKYQIQLIGRA---NKTK 159
                T +     V     +L     +     L + L         IQ    A    + +
Sbjct: 134 TESQHTKKLMLRFVLRSETKL--PLIQREFAGLLEKLPQLEVVSVNIQPQHAAILEGEKE 191

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
           I L   +    L  +   +        F Q N  +   +        + +    L +L+C
Sbjct: 192 IFLTNQH---TLLESFNGIPLFIRPQGFFQTNPLVAQGLYATAQDWVQDLPITKLWDLFC 248

Query: 219 GNGNFSLVLARHFD-------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           G G F L  A+           ++ +EI+  +++AA  +     +NNVK   + +  F  
Sbjct: 249 GVGGFGLHCAKALQDKHQQEVELIGIEISPSAIQAATQSAQVLGLNNVKFQSLDAANFAL 308

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329
           A                  +   + V+PPR G+       + +  PH ILY SCN  S+ 
Sbjct: 309 AQDE--------------NKPDLVIVNPPRRGIGKELAEFLNEMQPHFILYSSCNAVSMG 354

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +DL  L+  + + ++ LFD FP+T H E  +LL 
Sbjct: 355 KDLQHLTN-YKLTQIQLFDMFPHTAHYEVLLLLT 387


>gi|257464907|ref|ZP_05629278.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor 202]
 gi|257450567|gb|EEV24610.1| 23S rRNA methyluridine methyltransferase [Actinobacillus minor 202]
          Length = 391

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 145/395 (36%), Gaps = 48/395 (12%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
           +S   L+ +Y  Q+A+K+  L++++  +    Q   L    SE  H+R +A+  +    +
Sbjct: 14  ISCQWLLTEYNVQIADKMAELKRLISPYLLQNQTEVLSPVASEQTHFRNKAKMVVSGSVE 73

Query: 57  DLYHIMFD--QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQI 107
                +    Q  +  + +            L   +   +    L+       + +L  I
Sbjct: 74  RPVLGLLKDQQDAQSGVDLTDCPLYPTEFATLFPVLKDFVGRAGLVPYNIAKKKGELKYI 133

Query: 108 DYLTSQSDQAIVTLIYHR--LLDDAWRECAIRLRDALHARK---YQIQLIGRA---NKTK 159
               SQ +QA+      R             +L + L  +      IQ    A    +T+
Sbjct: 134 LLTQSQYNQAVSLRFVLRSTQKQPLIERELPKLLEKLPPKSIVSLNIQPQHAAILEGETE 193

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
           I L  + V E        +        F Q N  +   + +      K +      +L+C
Sbjct: 194 IFLTPERVIEE---NFNGIPLFIRPQGFFQTNPKVASELYKTTQMWVKTLPIQQCWDLFC 250

Query: 219 GNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           G G F L  A+          +  +EI+  ++ +A  +     + NV    + S +F   
Sbjct: 251 GVGGFGLHCAKALQDTNPEVTLTGIEISASALASATQSAEKLGLKNVTFASLDSAQFA-- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                       ++        + V+PPR G+  A    +     P+++Y SCN  ++  
Sbjct: 309 ------------LNEKGSVPDLVIVNPPRRGIGKALAEYLNQLGSPYVIYSSCNAKTMAE 356

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D +     + + ++ LFD FP+T H E   LLV+K
Sbjct: 357 DFASFDN-YVLAKVQLFDMFPHTAHYEVLTLLVKK 390


>gi|224098629|ref|XP_002187418.1| PREDICTED: similar to TRM2 tRNA methyltransferase 2 homolog B
           [Taeniopygia guttata]
          Length = 467

 Score =  189 bits (479), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 81/419 (19%), Positives = 143/419 (34%), Gaps = 77/419 (18%)

Query: 9   QYEQQLAEKVD-----------RLRQMMLAFQVPN-----LQIFRSEP--IHYRMRAEFH 50
            Y++QL  K +           RL ++ +  Q P      LQ     P    YR ++ F 
Sbjct: 63  SYQEQLQVKYESQKKILQTLASRLEELGIDAQKPGGLCCPLQPVVPSPIISGYRNKSTFS 122

Query: 51  I--WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT----IRLEPLLRAKL 104
           +    DG+     M+    +ER  +         I +   ++       I   PL    L
Sbjct: 123 VNRGPDGNPKTVGMYVGTGRERNIVCVNANHVENIPSKHKQVAQCYEEFICQSPLDSCIL 182

Query: 105 FQID-------YLTSQSDQAIVTLIYH------------RLLDDAWRECAIRLRDALHAR 145
           F            T++    +  + +H            + L   +  C      AL + 
Sbjct: 183 FHEGGHWRELVVRTTRCGHTMAIITFHPQQLGQEALATQKALLKEFFTCGPGAVCALTSL 242

Query: 146 KYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
            +Q   + R +  +    +     ++ E L      L +R   ++F Q N      + + 
Sbjct: 243 YFQESTMTRCSHEQSPYQLLHGAPHIFEELH----GLKFRISPDAFFQVNTAGAEVLYQA 298

Query: 202 VLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V    +     +L ++ CG G   L LA    +V+ VE+ + ++E A +N A N ++N +
Sbjct: 299 VGELCQATGDTVLLDICCGTGTIGLSLAHQVSKVIGVEVVEKAIEDAEWNAAFNGISNCE 358

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PH 317
                ++     +                 R     V+P R+GL    V  ++       
Sbjct: 359 FHSGKAEAVLPQLLAL----------WEDARPLVAVVNPSRAGLHHRVVRAIRNCRSIRR 408

Query: 318 ILYISCNPDSLC-RDLSILS-----------TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +LYISC P+    R+   L                      FD FP+T H E  +L  R
Sbjct: 409 LLYISCKPEGEAMRNFLELCCPPDPQKKLAGEPFVPVLAIPFDMFPHTVHCELVLLFTR 467


>gi|219871135|ref|YP_002475510.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus parasuis
           SH0165]
 gi|219691339|gb|ACL32562.1| 23S rRNA 5-methyluridine methyltransferase [Haemophilus parasuis
           SH0165]
          Length = 436

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 138/347 (39%), Gaps = 28/347 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           Q   K   L   +   Q   +    +   +  +YR RA+  +    + L        T+E
Sbjct: 103 QRETKQQTLFNRLQKLQAEPIRFEPMLVGQGTNYRRRAKLSMVVQKNTLVVGFRQANTRE 162

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            + +++       +N L+ ++   +      + +L  I+ + + +  A++     R + +
Sbjct: 163 IIPLNHCDILEPELNTLLPKLQQ-LFASWKNKKQLGHIELVQADNGVALLL----RHIGE 217

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
              + + +L+    A +  + L    +K +I   R    E        L        F Q
Sbjct: 218 LHSQDSEKLQRF--AEQEDLLLFVMTDKDQISQWRG---EVPYYQINGLTLHFSIRDFIQ 272

Query: 190 PNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            N  +N  M+   +        D +L+L+CG GNF+L +A   + V+ +E  +P V  A+
Sbjct: 273 INREMNKQMVNKAIVWLDLQPTDRVLDLFCGMGNFTLPIAPFVEEVVGIEGVEPMVAQAK 332

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   N +NN K  +    +               D       F    +DP R+G   A 
Sbjct: 333 QNAQTNQINNAKFYQTDLDK------------PFVDQPWAKAYFNKALLDPARNGAYFAL 380

Query: 309 VGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
             + +  P  I+Y+SCNP +L RD   L +  + + + A+ D FP+T
Sbjct: 381 DHLCELQPERIVYVSCNPATLVRDAEKLIAKGYRLSQSAMIDMFPHT 427


>gi|118098389|ref|XP_415080.2| PREDICTED: similar to HpaII tiny fragments locus 9C [Gallus gallus]
          Length = 602

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 141/425 (33%), Gaps = 84/425 (19%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            YEQQLAEK     Q++                               ++  ++ P+   
Sbjct: 137 PYEQQLAEKRRECEQVLQKLAKEIGNTNRALLPWLFLQKQKYNKMCCPVEGVKASPLQTE 196

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT------- 93
           YR + EF   I  + +D        + K           ++ I A+  +++         
Sbjct: 197 YRNKCEFLIGIGVNQEDKTVGCRLGKYKGGTCAVVEPFDTIHIPAVAKKVVKAFQDYIRS 256

Query: 94  ----IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL------LDDAWRECAIRLRDALH 143
               +           Q+   TS++   +  + ++        L D     A    +   
Sbjct: 257 TPYSVYSPETYEGHWKQLTVRTSRNGHIMAIVYFNPQKLSREELADLKAALAKHFTEGAG 316

Query: 144 ARKYQIQLIGRANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
                  L       +                 Y+ E L      L +R   ++F Q N 
Sbjct: 317 KESGITSLYFVEEGQRKSPNLEDLPLEHVAGDKYIYEELL----GLKFRISPHAFFQVNT 372

Query: 193 GINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                +   +        +  +L++ CG G   + LA+   +V+ +E+ + +V+ A+ N 
Sbjct: 373 QAAEVLYAAIREWAQLSQESTVLDICCGTGTIGISLAKKVKKVIGIELCQEAVQDAKANA 432

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N ++N++     +++   ++           I+I + +     VDPPR+GL    +  
Sbjct: 433 QINELSNIEFHCGKAEDIVPSL-----------INILAPQNLITIVDPPRAGLHSRVILA 481

Query: 312 VQAY---PHILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECG 359
           ++       ++Y+SCNP +   +   L                +    D FP T+H E  
Sbjct: 482 IRRAEQLKKLIYVSCNPRAAMNNFVDLCRAPSNRVKGAAFRPVKAMAVDLFPQTKHCELL 541

Query: 360 VLLVR 364
           +L  R
Sbjct: 542 ILFER 546


>gi|257439482|ref|ZP_05615237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii A2-165]
 gi|257198141|gb|EEU96425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium
           prausnitzii A2-165]
          Length = 259

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 99/266 (37%), Gaps = 30/266 (11%)

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDA-------LHARKYQIQLIGRANKTKICLDRD 165
            S Q +V L+  R       E    L          L     +   +   ++T       
Sbjct: 8   HSGQIMVCLVCTRAKLPHAEELCRTLTAQFSDIATILINVNARNTNVILGSETHTLYGPG 67

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
           ++++ L      +  +    SF Q N      +       A       LL+LYCG G   
Sbjct: 68  FIEDTLC----GVPVQLGPLSFYQVNTLAAEQLYGIAAEYAQLTPDDLLLDLYCGMGTIG 123

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANH---VNNVKIVRMSSKEFTQAMRREREFNR 281
           L +A H   ++ VEI   ++E+A+ N A          +     + +    +  E     
Sbjct: 124 LSMADHCRELIGVEIVPEAIESAKANAARMGDAIAAKSRFFCADAGKAASQLAAE----- 178

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338
                        + +DPPR G D+AT+  V   +   ++Y+SCNP +  RD   L    
Sbjct: 179 -------GLHPDVVMLDPPRKGCDEATLSAVVTMSPRRVVYVSCNPSTAARDAKWLEEHG 231

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           +  E++   D FP TRH+E  V L R
Sbjct: 232 YRAEKVQPVDLFPRTRHVEAIVSLQR 257


>gi|50421187|ref|XP_459139.1| DEHA2D15114p [Debaryomyces hansenii CBS767]
 gi|49654806|emb|CAG87310.1| DEHA2D15114p [Debaryomyces hansenii]
          Length = 566

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 82/411 (19%), Positives = 153/411 (37%), Gaps = 73/411 (17%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQM---MLAF------QVPNLQIFRSEP--IHYRMRA-- 47
           SG       Y+QQL  K   +      M          +P ++   + P    YR +   
Sbjct: 183 SGCQYQSVDYKQQLVFKKQTIENAYKYMAPILSKADNGLPLVKNTEASPLQYGYRTKLTP 242

Query: 48  EFHIWHDGDDLY---HIMFDQQTK------------ERMRIDYFMPGSLLINALMIEMMA 92
            F++ +     Y    + F  + +              + I+    G+ +IN  M    +
Sbjct: 243 HFNLPYTKPKEYPPPSLGFGAKGRPTWRPEAEGGNFSILDIEECTIGTEIINKGMSNERS 302

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQI 149
              L+  ++ K         +    ++    +++ ++   E      D   ++ +   ++
Sbjct: 303 R-YLQDYMKYK---------KGATILLREDTNKVTEEEPVEQKPASTDPEGSVSSVTLEL 352

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA---- 205
               +  KT +   R  V E +        ++     F Q N  I   + ++V +     
Sbjct: 353 DNGDKLRKTCVTSSRQIVTEYV----NGFQFQFSAGEFFQNNNSILPIVTDYVKSNLQIP 408

Query: 206 --TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                    L++ YCG+G FS+  ++   RV+ VE++  SV+ A  N   NH+ N   + 
Sbjct: 409 NSNADEPNYLVDAYCGSGLFSITCSQGVSRVIGVEVSADSVKFAELNAKNNHIENATFIV 468

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYI 321
             +++               +ID  + R   + +DPPR G DD  +  +  Y    I+YI
Sbjct: 469 GKAEKIF------------GNIDTPADR-TAVILDPPRKGCDDVFLNQLSEYHPARIVYI 515

Query: 322 SCNPDSLCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           SCN  S  RD+            + +E +  FD FP T H+E   +L  K 
Sbjct: 516 SCNVHSQARDVDWFINKTKHGQDYFVESIKGFDFFPQTHHVESIAVLALKN 566


>gi|225159258|ref|ZP_03725559.1| RNA methyltransferase, TrmA family [Opitutaceae bacterium TAV2]
 gi|224802155|gb|EEG20426.1| RNA methyltransferase, TrmA family [Opitutaceae bacterium TAV2]
          Length = 451

 Score =  188 bits (478), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 128/378 (33%), Gaps = 75/378 (19%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRA--EFHIWHD 54
            G    D  Y  QL  K  ++ +++             I       YR +    F+   D
Sbjct: 108 GGCQYQDFNYASQLVWKRRQVGELLRHMAGIESSVSPVIGSPRQYGYRSKITPHFNPRRD 167

Query: 55  GDDLYH-----IMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID 108
                          Q T+ + + +      +  INA + E+ A ++ +    A +    
Sbjct: 168 ASGAMMADMPIGFLRQGTRFDLLDVPRCEIATDAINARLTEVRAEVQTKAAAGAYVRGAT 227

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
            L   +   + T                                               D
Sbjct: 228 LLLRDASGVVTTNY---------------------------------------------D 242

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           + +T     L  R +   F Q N  I      +V           L++ YCG+G F+L  
Sbjct: 243 DIVTEQVGDLRLRFLARDFFQNNPFILPAFTGYVREQAAAGGARFLVDAYCGSGLFALSA 302

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A  F++V  +EI++ S+  AR N   N + N       +      +              
Sbjct: 303 ASAFEKVAGIEISESSIVFARKNAELNGICNATFQAGDASAIFAGLTF------------ 350

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCRDLS-ILSTTHTIERL 344
                  + +DPPR G D++ +  +  Y P  ++Y+SC+P +  RDL   L+  + +  +
Sbjct: 351 -PAADTAVIIDPPRKGCDESFLQQLFGYGPRTVVYVSCDPATQMRDLRHFLAAGYELSAV 409

Query: 345 ALFDQFPYTRHMECGVLL 362
             FD FP TRH+EC + L
Sbjct: 410 QPFDLFPQTRHLECVITL 427


>gi|147669587|ref|YP_001214405.1| (Uracil-5)-methyltransferase [Dehalococcoides sp. BAV1]
 gi|289432847|ref|YP_003462720.1| (uracil-5)-methyltransferase [Dehalococcoides sp. GT]
 gi|146270535|gb|ABQ17527.1| (Uracil-5)-methyltransferase [Dehalococcoides sp. BAV1]
 gi|288946567|gb|ADC74264.1| (Uracil-5)-methyltransferase [Dehalococcoides sp. GT]
          Length = 393

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 136/373 (36%), Gaps = 71/373 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRS-EPIHYRMRAEFHIWHDGDD 57
             T     Y  QL  K   +         F +    +  S E   YR  A   I+H    
Sbjct: 82  GCTFQHINYIHQLQLKHRIVTAEFEKAELFGIDISPVVPSDEESGYRNHARLSIYH---- 137

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                 ++ ++  ++ID+    +  IN ++  +            +  QI      +  +
Sbjct: 138 ANLGFVNRFSRRHIQIDHCRIMNPGINKVLAGLQGKC-------GETRQISIRYGSNKDS 190

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
            +                  ++  L      I+  G+     I L  D            
Sbjct: 191 YL------------------IQPKLVKANVDIE-SGQKEYHDILLGHD------------ 219

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVL 235
             +     SF Q N      M   ++     + G   L++ Y G G F+++L+    RV+
Sbjct: 220 --FCISAASFFQVNNPQAEKMAN-LIKNHLNLSGSETLVDAYAGVGTFAVLLSPDCKRVI 276

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           A+E +  +V+ A  NI+   ++N+++++  +++                      +   +
Sbjct: 277 AIEESAAAVKDACLNIS--GIDNIELIQSKTEDVINQFEG---------------QMDAL 319

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352
            +DP RSG   + +  +   P  +++Y++C+P SL RDL  +L+    +  +   D FP 
Sbjct: 320 ILDPSRSGAHPSVLATICQNPPRNLVYVACDPSSLARDLKILLAGPFELSSVIPVDMFPQ 379

Query: 353 TRHMECGVLLVRK 365
           T H+E   LL  K
Sbjct: 380 TYHVETLALLKCK 392


>gi|239996013|ref|ZP_04716537.1| RNA methyltransferase, TrmA family protein [Alteromonas macleodii
           ATCC 27126]
          Length = 486

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 132/372 (35%), Gaps = 22/372 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHI-WHDGD 56
              L   + +  L ++   L+ MM         +           YR +A   I   + +
Sbjct: 127 GCQLQHIKPDAALEQRDRALKVMMERQLSMKPHVWQAPLAGPRPQYRRKARLAIDARNPN 186

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            +     +  +   +  +        ++ L+  +   +      R  +  I  +   +  
Sbjct: 187 QIKLGFREANSSNVINAETCPILVDPLSKLIGPLRDALTGFESARH-IGHISLIAGDNTS 245

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +V + + + L+    +    L +   +       +   NK           + +     
Sbjct: 246 HLV-IKHTKALEAELIDAVSELVNTSSSVGVCGIELKLENKQAQIRSVGRGTDMVMNTVN 304

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVL 235
           +       N F Q N  +N  M+   +        + + + + G GNF+L +A+   +V 
Sbjct: 305 SCSISPSANDFIQINKVVNEKMVNQAIGWLNPEPNERVADWFSGLGNFTLPIAKLGAKVQ 364

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AVE     V  A+ N     + NV+ + +   + T      +              F  +
Sbjct: 365 AVEGVAEMVRRAKDNAQQQGIENVEWLHLDLADKTNVEASLQ------------LGFDKV 412

Query: 296 FVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
            +DP R G       +V+A P  I+Y+SCNP +  RD  +L    + +E+  + + FP+T
Sbjct: 413 LLDPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLIDGGYEMEKAGVAEMFPFT 472

Query: 354 RHMECGVLLVRK 365
            HME   L  RK
Sbjct: 473 HHMEMMALFTRK 484


>gi|332994403|gb|AEF04458.1| RNA methyltransferase, TrmA family protein [Alteromonas sp. SN2]
          Length = 473

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 147/374 (39%), Gaps = 34/374 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRS-EPIHYRMRAEFHI-WHDGD 56
              L   + ++ LA + D L+ M      F     Q   S     YR +A   I   + D
Sbjct: 120 GCQLQHVEPQEALALRDDALKSMFQRKLGFNEGAWQAPVSGNRPRYRRKARLAIDARNPD 179

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            +     +   K  + I+        ++ L+  + + I       A+L     L +  + 
Sbjct: 180 KIKLGFRENAGKNIVDIEGCPVLVESLSQLIAPLKSAIT--GYASARLVGHVSLLAGENA 237

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
             VT+ + R L + +     +      A +  + +       +      ++ E   +   
Sbjct: 238 VQVTVKHTRSLANDFIASLSQF-----AVEQNVNMTIEDGNGEFT----HLHEIAPITCN 288

Query: 177 T---LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
           T      +   N F Q NA +N  M+   L+      G+ + + + G GNF+L +A    
Sbjct: 289 TVDGFYLQPGPNDFVQVNAEVNTKMVAQALSWLAPKAGERIADWFSGLGNFTLPIANSGA 348

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V AVE     V+ A+ N     + NV  +++   +       E+  ++       +  F
Sbjct: 349 TVSAVEGVAEMVQRAKSNALEQGITNVDWMQLDLAD-------EKSVDK-----ALAGGF 396

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
             + +DP R G       +V+A P+ I+Y+SCNP++  RD  +L    + +++  + + F
Sbjct: 397 DKVLLDPSREGALTVCHALVRATPNTIVYVSCNPNTFSRDARVLIDGGYQMQKAGVVEMF 456

Query: 351 PYTRHMECGVLLVR 364
           P+T HME   L  R
Sbjct: 457 PFTHHMETMALFTR 470


>gi|258626910|ref|ZP_05721714.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM603]
 gi|258580833|gb|EEW05778.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Vibrio mimicus VM603]
          Length = 265

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 27/287 (9%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           +NAL+ E+ A +  +      L  ++ +   + Q +V     R L     +    L D  
Sbjct: 1   MNALLPELNALLS-QWSQPELLGHVELVKGDNTQVLVL----RHLGALAEQDQQSLSDFA 55

Query: 143 HARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
             +   + L   A + +       Y +E             + N F Q N  +N  M+E 
Sbjct: 56  TQKGLTLYLTLEAGELQHVQGEAPYCEET------GSRLSFLPNHFIQVNRAVNQQMVEQ 109

Query: 202 VLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            L       Q  +L+L+CG GNF+L LA+    V+ VE  +  V+ A +N   N +NNV 
Sbjct: 110 ALNWLEVNKQDRVLDLFCGLGNFTLPLAKQAQEVVGVEGVEEMVQHATHNAKLNQINNVA 169

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHIL 319
             + + ++             + +      +F  + +DP R+G +     +       ++
Sbjct: 170 FYQANLEQ------------DMTNASWAQQKFAKVLLDPARAGAEGIVDQLAALGAERVV 217

Query: 320 YISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           Y+SCNP +L RD  S+LS    +E+L + D FP+T H+E   L V+K
Sbjct: 218 YVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFVKK 264


>gi|226330766|ref|ZP_03806284.1| hypothetical protein PROPEN_04686 [Proteus penneri ATCC 35198]
 gi|225201561|gb|EEG83915.1| hypothetical protein PROPEN_04686 [Proteus penneri ATCC 35198]
          Length = 369

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 146/376 (38%), Gaps = 47/376 (12%)

Query: 15  AEKVDRLRQMM-LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            +K   L  ++   +    L    S+   +R +A+  +    +     +   +T+E + +
Sbjct: 18  RKKQHSLLSLLPEDYAFDKLTPVESQQAQFRNKAKMVVSGSVEKPVLGL---KTREGVAV 74

Query: 74  DYF-----MPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTSQSDQAIVTLIYH 124
           D             I +++   +A   L P      R +L  I    S+S+  ++     
Sbjct: 75  DLCECPLYPDSFAPIFSILKTFIARAGLVPYDIERRRGELKFILLTESRSNGTMMLRFVL 134

Query: 125 R------LLDDAWRECAIRLRDALHARKYQIQLIGRA----NKTKICLDRDYVDERLTVA 174
           R       L  A      +L   L      IQ I  A     K  I  ++ ++DE     
Sbjct: 135 RSEKKLEQLRKALPWLQAQLPQ-LAVISVNIQPIHMAILEGEKETILTEKTFLDESF--- 190

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
              +        F Q N  +   +        + +    L +++CG G F L  A    +
Sbjct: 191 -NQIPLHIRPRGFFQTNPEVASSLYATAGRWVRELNITHLWDMFCGTGGFGLHCADKSTQ 249

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +  +EI+  ++E AR +     + +V+   + S  +  A+ +E                +
Sbjct: 250 LTGIEISPEAIECARLSAQELGLEHVEFQALDSTGY--ALTKE-------------SVPE 294

Query: 294 TIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+ +A  G +       ILY SCN  ++ +D+  L+  + I+R+ LFD FP
Sbjct: 295 LVLVNPPRRGIGEALCGYLNTMKPRFILYSSCNAQTMAKDIQQLTH-YQIDRVQLFDMFP 353

Query: 352 YTRHMECGVLLVRKPS 367
           +T H E   LLV K S
Sbjct: 354 HTSHYEVLTLLVLKDS 369


>gi|156402171|ref|XP_001639464.1| predicted protein [Nematostella vectensis]
 gi|156226593|gb|EDO47401.1| predicted protein [Nematostella vectensis]
          Length = 711

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 144/427 (33%), Gaps = 87/427 (20%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPI--H 42
            Y +QL  K  ++ + +                               LQ     PI   
Sbjct: 286 PYSEQLEFKNQKIEEFLKKLTKQIKDMMELKGTWVEEESKVRNGICCELQKCEESPIVDG 345

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQT-KERMRIDYFMPGSLLINALMIEMMAT----IRLE 97
           YR + EF I         + F   + KE             I+    ++ +     IR  
Sbjct: 346 YRNKCEFTIAEGPKGAKTVGFRVGSYKEGYSGVIEPFNCCHISKTAKKVASAFQKYIRNS 405

Query: 98  PLLRAKLFQI----------DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKY 147
           PL    L               +  +S   +          +   E     R  L     
Sbjct: 406 PLPEYDLCFHTGHWQTLTVRSTVLGESMAIVQYNPQKMSATEIATENDKIRRYFLEGEGK 465

Query: 148 QIQLIGRANKTK--------------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
           +  L     +                  L    + E +      + +    N+F Q N+ 
Sbjct: 466 ECNLTSLYAQVNATRAVGCQSPAPFTHLLGEKVIHEVIC----DVKFGISPNAFFQVNSK 521

Query: 194 INVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
               M+  +++   G Q +  LL++ CG G+  L LA++  +V+ VE+ + +VE A+ N 
Sbjct: 522 AAEKMI-HIISRWMGEQKETTLLDICCGTGSIGLCLAKYVSKVIGVEVIQSAVEDAKQNA 580

Query: 252 AANHVNNVKIVRMSSKEFT--QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
             N + N + V   +++    ++M+R R F +   I           +DPPR+G+  + +
Sbjct: 581 IMNGITNAEYVCGKAEDVFTYKSMKRLRRFTQCIGI-----------MDPPRAGVHKSVI 629

Query: 310 GMVQAY---PHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHME 357
             ++ Y     ++Y+SC PD    +L  L              +      D FP+T+H E
Sbjct: 630 DAIRKYDKLDKLIYVSCAPDHAIPNLLDLCRPTSKRVKSVPFRLVSAVPVDLFPHTKHCE 689

Query: 358 CGVLLVR 364
             +L  R
Sbjct: 690 LLMLFQR 696


>gi|184201679|ref|YP_001855886.1| 23S rRNA methyluridine methyltransferase [Kocuria rhizophila
           DC2201]
 gi|183581909|dbj|BAG30380.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Kocuria
           rhizophila DC2201]
          Length = 378

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 140/383 (36%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S T++   Y +QLA K + +R+++ A   P  L+   S    +R +A+  +         
Sbjct: 13  SCTVIEVPYARQLARKQELVRELVDAHGAPRWLEPVASPEKGFRNKAKMVVAGRVGAPAL 72

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYLTSQ 113
            + D      + +         +   +  +   I    LL       R ++  +    S 
Sbjct: 73  GILDGAA--GVDLRDCPLYPEPVTRALHALADFIGRVRLLPYDVAKRRGEIKHVIVTGSP 130

Query: 114 SDQAIV--TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
             + +V   L   R L     E    LR+ + A       I   +K  +    +  +E L
Sbjct: 131 EGRLMVRFVLRSTRQL-PKIAENLDLLRELVPAADVVSVNIQPEHKAVL----EGPEEIL 185

Query: 172 TVAGRTLIYR-------QIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNF 223
                 L+ R           SF Q N  +   +   V      +    + +LYCG G F
Sbjct: 186 LSEQSELVMRLNGIDLRVRPRSFFQTNTAVTEQLYRQVADWVDAVGPASVWDLYCGVGGF 245

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L +A     V+  EI++ +V +A+    A  +           +      R    +   
Sbjct: 246 ALHVAGPGREVVGTEISEEAVASAQDTARAMGLP----------QDGPGSVRFLADDAAA 295

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                    +   V+PPR GLD +    ++  +  H +Y SCN  +L RDL+ + +    
Sbjct: 296 TPADLPGTPELAVVNPPRRGLDASLCAWLESSSVRHAVYSSCNAQTLARDLARMPSL-RP 354

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
               L D FP+T H E  VLL R
Sbjct: 355 VEARLLDMFPHTGHYEVAVLLRR 377


>gi|269958068|ref|YP_003327857.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269306749|gb|ACZ32299.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 411

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 136/404 (33%), Gaps = 47/404 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           S TLL   Y  Q+A+K   +R ++  F      L    S    +R +A+  +    ++  
Sbjct: 13  SCTLLDVAYPVQVADKERHVRGLLEPFAPDAAWLPPVTSAEGGFRNKAKMVVTGTVEEPV 72

Query: 60  HIM-------FDQQTKER---MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
             +       +D+        + +         +      +   +    L    L     
Sbjct: 73  IGIVGALPQGYDRVGHRGPTGVDLTDCPLYPPTLQDAFGPLAELVTRARLQPYDLTPSRG 132

Query: 110 LTSQSDQAIVTLIYHRLLDDAW------------RECAIRLRDALHARKYQIQL------ 151
             +  D A    + H ++  +             +E   RLR  L   +  +        
Sbjct: 133 RVTPRDAAGRGELKHLIVTVSPAGALMVRLVLRSQEPVARLRKHLPWLQTALPNLAVLSV 192

Query: 152 --------IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
                   +    +  +  +R+ +   L V    L       SF Q N  +   +     
Sbjct: 193 NLQPEHKAVLEGEREIVLTERETLPMTLPVRPGGLTLHLRPQSFFQTNTDVAAALYRQAA 252

Query: 204 AATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                +    L +LYCG G F+L  A     V  +EI+  +V +A+   A     +    
Sbjct: 253 QWIDDVAPASLWDLYCGVGGFALTCAAPGRAVTGIEISAEAVASAQVTRAELEATDGGPA 312

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILY 320
            M+   F                   +   + + V+PPR G+  A    +++     +LY
Sbjct: 313 AMAGVRFAAGDATAFALGCDP-----ADVPELVIVNPPRRGIGPALADWLESSSARWVLY 367

Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            SCN D+L RDL  + +     ++ L D FP TRH E   LL R
Sbjct: 368 SSCNADTLARDLERMPSL-RPAKVRLLDMFPQTRHYEVLTLLER 410


>gi|212709677|ref|ZP_03317805.1| hypothetical protein PROVALCAL_00725 [Providencia alcalifaciens DSM
           30120]
 gi|212687488|gb|EEB47016.1| hypothetical protein PROVALCAL_00725 [Providencia alcalifaciens DSM
           30120]
          Length = 375

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 138/374 (36%), Gaps = 39/374 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI-FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           EQQ++ K + L+ ++ +                +R +A+  +    +     + ++    
Sbjct: 22  EQQISRKQNHLQSLLPSLDSSLFLTPITGPAEAFRNKAKMVVSGSVEKPILGIVNRDGVA 81

Query: 70  R--MRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYLTSQSDQAIV 119
                   +      + A +I  +A   L P         L+  L    + T Q     V
Sbjct: 82  VSLTECPLYPAEFSQVFAQLIPFIARAGLTPYNIERKRGELKYILLTQSWHTKQFMLRFV 141

Query: 120 TLIYHR--LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVA 174
                +   L +A      +L   L      IQ I  A    + +I   + +V   L   
Sbjct: 142 LRSDKKIAQLQNALPWLQEKLPQ-LAVITANIQPIHMAILEGEQEIMFTQQHV---LRDE 197

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR 233
              +       SF Q N  +   + +      K +    L +L+CG G F L  A    +
Sbjct: 198 FNQVPLFIRPQSFFQTNPIVASQLYQTAREWVKALNITSLWDLFCGVGGFGLHCADKTTK 257

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +  +EI+ P++E AR +     + +V+   + S  F  +                     
Sbjct: 258 LTGIEISAPAIECARQSAQELGLQHVEFQALDSTNFATS---------------RDDIPD 302

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + V+PPR G+       +      +ILY SCN  ++ +D ++LS  + + ++ LFD FP
Sbjct: 303 LVLVNPPRRGIGKNLCTYLSDMHPEYILYSSCNAQTMAQDFALLS-GYQVCKVQLFDMFP 361

Query: 352 YTRHMECGVLLVRK 365
           +T H E   LL RK
Sbjct: 362 HTAHYEVLSLLKRK 375


>gi|145628105|ref|ZP_01783906.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145638219|ref|ZP_01793829.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittII]
 gi|144979880|gb|EDJ89539.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae
           22.1-21]
 gi|145272548|gb|EDK12455.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittII]
 gi|309751374|gb|ADO81358.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R2866]
          Length = 391

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 137/395 (34%), Gaps = 49/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQL EK   L+Q +++      Q    F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLTEKQYHLKQQLISINYDEAQWVAPFQSNEQGFRNKAKMVVSGSVERP 73

Query: 59  YHIMFDQQTKE----RMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQ 106
              +      +          +      I +++ + +    L P         L+  L  
Sbjct: 74  ILGILKNNDPQSAIDLCDCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKYILLT 133

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKIC 161
               T +     V    ++ L    RE    L+   H     I L  +       + +I 
Sbjct: 134 ESIATEKLMLRFVLRTENK-LPLIRRELPKLLKKLPHLEVISINLQPQHAAILEGEQEIF 192

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGN 220
           L      + L      +        F Q N  +   +              +L +L+CG 
Sbjct: 193 LTE---QQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCGV 249

Query: 221 GNFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           G F L  A+              +EI+  ++ AA ++     + +V    + +    +  
Sbjct: 250 GGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLDAASLIE-- 307

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRD 331
                       + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +D
Sbjct: 308 ------------NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKD 355

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           L  L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 356 LQHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 389


>gi|1209277|gb|AAA91052.1| pCTHom1 [Chlamydia trachomatis]
          Length = 333

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 134/345 (38%), Gaps = 41/345 (11%)

Query: 47  AEFHIWH--DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP------ 98
            EF  +   DG+     +   + K+ + I   +        ++    +     P      
Sbjct: 1   MEFSFYQTVDGEKTLGFISPSKPKKGIPITECLMIDERAMDILNITRSWWTAHPDLSAYY 60

Query: 99  --LLRAKLFQIDYLTS--QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
             L +  L  I        +D  I+     R             + +L      I  I  
Sbjct: 61  PPLNKGSLCTITVRVGNISNDFMIILTTSGREEFAVPLNIIQEWQQSLLDSGLPITSIFW 120

Query: 155 ANK-----------TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
             K           T       ++ ++L++ GR+ ++     SF QP +     +++ + 
Sbjct: 121 EEKLSARNSPTTFRTTHLYGAPFLKQQLSIDGRSSLFHIRPRSFFQPQSLQAEKIIQTIK 180

Query: 204 AATKGI-QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                  +  LL+LYCG G   ++LA +  +++ VE+   +V +A+ NI  N V+ +++ 
Sbjct: 181 EFIDPCGEETLLDLYCGRGTIGILLAPYVKKIIGVELVPDAVASAQENIQLNSVD-MEVF 239

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILY 320
              +K+F +                       + +DPPR G+ +  +  +   A   I+Y
Sbjct: 240 LEDAKQFCKRNENLP-------------SPDIVVIDPPRCGMQNKALKYLLRMAPKKIVY 286

Query: 321 ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +SCNP +  ++ S+L    + +  +   DQFP+T H+E  VLL R
Sbjct: 287 VSCNPLTQIQECSVLVEQGYQLRHMQPIDQFPHTNHLENIVLLER 331


>gi|122890880|emb|CAM13119.1| novel protein (zgc:55519) [Danio rerio]
          Length = 619

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 131/425 (30%), Gaps = 84/425 (19%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPI--H 42
            YE+QL  K   +  ++                               L+  R  P+   
Sbjct: 201 PYEEQLMMKEKEVEGVLQKLAREIGNNNKAMLPWLFVQKEKHNKMCCPLEAIRPSPLQTG 260

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERM----------RIDYFMPGSLLINALMIEMMA 92
           YR + EF I    D     +  +  K +             +       ++      +  
Sbjct: 261 YRNKCEFVIGVGADGEDRTVGFRLGKYKGGSCAVVSPSETTNVCSEAKRVVQCFQQFIRT 320

Query: 93  ---TIRLEPLLRAKLFQIDYLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDALHA--- 144
               +           Q+   T++  Q  A+V     +L +    E    L         
Sbjct: 321 TPYAVYSPETYEGHWRQLTVRTTRLKQTMAMVFFNPQKLQEKELEELKQNLGQYFTEGEG 380

Query: 145 ---RKYQIQLIGRANKT---------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
                  +  +    +T         +     +++ E L      L +R   +SF Q N 
Sbjct: 381 KECAVTSLYFVRMGQRTSAGTEDLPCEHVTGEEWIHEELL----GLKFRISPHSFFQTNT 436

Query: 193 GINVHMLEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                +   V   A       +L++ CG G   + LA+   +V+ +E+ + +V+ A  N 
Sbjct: 437 PAAEILYSAVGEWAQLDQDSTVLDVCCGTGTIGISLAKRVKKVIGIELCQEAVKDAEANA 496

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            AN + NV+     +++    +        +           T  VDPPR+GL    +  
Sbjct: 497 KANGLTNVEFHCGKAEDVFPTILNAVVSPNV-----------TAIVDPPRAGLHSKVILA 545

Query: 312 VQAY---PHILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECG 359
           ++       ++Y++CN  +   +   L                +    D FP T H E  
Sbjct: 546 IRKAEHLKRLVYVACNAKAAMNNFIDLCRAPSNRVRGAAFRPVKAMAVDLFPQTMHCETI 605

Query: 360 VLLVR 364
           +L  R
Sbjct: 606 LLFER 610


>gi|41053969|ref|NP_956223.1| tRNA (uracil-5-)-methyltransferase homolog A [Danio rerio]
 gi|28279548|gb|AAH45367.1| Trm2 tRNA methyltransferase 2 homolog A (S. cerevisiae) [Danio
           rerio]
          Length = 619

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 131/425 (30%), Gaps = 84/425 (19%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPI--H 42
            YE+QL  K   +  ++                               L+  R  P+   
Sbjct: 201 PYEEQLMMKEKEVEGVLQKLAREIGNNNKAMLPWLFVQKEKHNKMCCPLEAIRPSPLQTG 260

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERM----------RIDYFMPGSLLINALMIEMMA 92
           YR + EF I    D     +  +  K +             +       ++      +  
Sbjct: 261 YRNKCEFVIGVGADGEDRTVGFRLGKYKGGSCAVVSPSETTNVCSEAKRVVQCFQQFIRT 320

Query: 93  ---TIRLEPLLRAKLFQIDYLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDALHA--- 144
               +           Q+   T++  Q  A+V     +L +    E    L         
Sbjct: 321 TPYAVYSPETYEGHWRQLTVRTTRLKQTMAMVFFNPQKLQEKELEELKQNLGQYFTEGEG 380

Query: 145 ---RKYQIQLIGRANKT---------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
                  +  +    +T         +     +++ E L      L +R   +SF Q N 
Sbjct: 381 KECAVTSLYFVRMGQRTSAGTEDLPCEHVTGEEWIHEELL----GLKFRISPHSFFQTNT 436

Query: 193 GINVHMLEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                +   V   A       +L++ CG G   + LA+   +V+ +E+ + +V+ A  N 
Sbjct: 437 PAAEILYSAVGEWAQLDQDSTVLDVCCGTGTIGISLAKRVKKVIGIELCQEAVKDAEANA 496

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            AN + NV+     +++    +        +           T  VDPPR+GL    +  
Sbjct: 497 KANGLTNVEFHCGKAEDVFPTILNAVVSPNV-----------TAIVDPPRAGLHSKVILA 545

Query: 312 VQAY---PHILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECG 359
           ++       ++Y++CN  +   +   L                +    D FP T H E  
Sbjct: 546 IRKAEHLKRLVYVACNAKAAMNNFIDLCRAPSNRVRGAAFRPVKAMAVDLFPQTMHCETI 605

Query: 360 VLLVR 364
           +L  R
Sbjct: 606 LLFER 610


>gi|14521350|ref|NP_126826.1| putative RNA methyltransferase [Pyrococcus abyssi GE5]
 gi|50401700|sp|Q9UZK1|Y1145_PYRAB RecName: Full=Uncharacterized RNA methyltransferase PYRAB11450
 gi|5458568|emb|CAB50056.1| RNA methyltransferase, putative [Pyrococcus abyssi GE5]
          Length = 410

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 143/377 (37%), Gaps = 47/377 (12%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLY 59
            G L    +Y +QL  K     ++         +I  S     +R  + F +  +G    
Sbjct: 68  GGCLWQGLKYREQLKLK----EEIFKRVTGVEAEIKGSPRIWFFRNISNFIVTVNGIGFK 123

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQIDYLTSQ 113
                +          F   + L    M   +    L P       +     +    T  
Sbjct: 124 EFGMPRTVVSVDECPVFSERTKLYIRAMKRFLRETGLNPWNWKNGDVHYLQVREGKFTG- 182

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI---CLDRDYVDER 170
             + ++ +I H     + RE          +  + ++   R +   I       +++ E 
Sbjct: 183 --EVMINVIAHIP--PSGREELTEAFGFADSVYWSLKRDKRDDPKGIPTLIKGNEFIRES 238

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           +      L+Y    ++F Q N+     +L+ V +  +G +  +L+LY G G FSL LA+ 
Sbjct: 239 I----EGLVYLIHPSTFFQTNSYALPILLKAVESFAEGSK--VLDLYSGVGTFSLYLAKK 292

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V  VE+ + SV  A+ +   N ++ V  +   ++                  D    
Sbjct: 293 GFEVTGVEVNEESVRVAKKSAEVNSLD-VSFIPGRAE------------------DAKLK 333

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIERLALFD 348
            ++T+ VDPPR GL D +  + +  P  ++Y+SCNP     D    LS  + IE   L D
Sbjct: 334 GYETLIVDPPRKGLKDFSKRIAKEGPENLIYVSCNPSKFVLDYRNYLSKAYKIEDAVLID 393

Query: 349 QFPYTRHMECGVLLVRK 365
            FP+T H+E  V L R+
Sbjct: 394 MFPHTPHVEAVVKLRRR 410


>gi|330796726|ref|XP_003286416.1| hypothetical protein DICPUDRAFT_94161 [Dictyostelium purpureum]
 gi|325083611|gb|EGC37059.1| hypothetical protein DICPUDRAFT_94161 [Dictyostelium purpureum]
          Length = 645

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 153/431 (35%), Gaps = 83/431 (19%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMM---------------------------LAFQVPNLQI 35
                  YE+QL +K +++  ++                                P  +I
Sbjct: 166 CPWYNIPYEEQLQKKKEQIINILINIKSETRKDSLHNLPFWLERRDKTREEKMCCPLEEI 225

Query: 36  FRSEP-IHYRMRAEFHIWHDGDDLYHIMFD-QQTKERMRIDYFMPGSLLI---------- 83
             S    +YR +A++ I  D +++  + F   +T   + I      + LI          
Sbjct: 226 IASPTIQNYRNKAQYTIGLDENNVPCVGFALGRTGNGVTIVADPSNAPLISTRSNEIRRL 285

Query: 84  -NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL-IYHRLLDDAW----RECAIR 137
            N  +I        +        Q+      + +++ T+   H+ L +      ++   +
Sbjct: 286 FNDYIISHPRKPFDKNTHEGFWRQLTVRDFSTGESMATVQFNHKGLSEEEINKEKDNLKK 345

Query: 138 LRDALHARK----YQIQLIGRANK-------TKICLDRDYVDERLTVAGRTLIYRQIENS 186
             ++L A K      IQL    +        T+  +  +Y+ E+L        +R   N+
Sbjct: 346 FFESLPADKQLTSLSIQLYDGISNAAPVDLPTETIMGPNYIHEKLL----GYTFRVSPNA 401

Query: 187 FTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N      +   VL          LL++ CG G      ++    +  +EI+  ++ 
Sbjct: 402 FFQVNTKATELLYSKVLEWAGVSENTHLLDVCCGTGTIGQCASKKVKCITGLEISPDAIT 461

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            +  N   N++ N +     +++   +M  +      KD +          VDPPRSGL 
Sbjct: 462 DSISNAQLNNITNAEYTLGKAEDTLPSMLTKFS----KDEEFIG------IVDPPRSGLH 511

Query: 306 DATVGMVQA---YPHILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYT 353
           +  +  +++      ++Y+SCN  SL +D   L                +   FD FP+T
Sbjct: 512 NDVLKAIRSFEPMKKLVYVSCNQKSLVQDSIKLCKGISKAMKGTPFIPTKAIAFDLFPHT 571

Query: 354 RHMECGVLLVR 364
             +E  VL  R
Sbjct: 572 DLVELVVLFER 582


>gi|258545955|ref|ZP_05706189.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cardiobacterium
           hominis ATCC 15826]
 gi|258518833|gb|EEV87692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Cardiobacterium
           hominis ATCC 15826]
          Length = 430

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 129/372 (34%), Gaps = 25/372 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
              L       Q   K     + +        +        EP HYR RA      D   
Sbjct: 76  GCALQHADDAAQHRLKETVWLEQLARIGKIAPETVLPAISGEPWHYRSRARLA--WDDAQ 133

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                  + +   + ++  +     I+A + ++ A        +  L  +D     S   
Sbjct: 134 QALGFRGRASSRVVNLERCLTLPAAISARLPDIRALCARLAQ-QTTLHGVDISEGDSVTV 192

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +   +   + D    E   R  ++  A+ +QI L       K   D   +   L     T
Sbjct: 193 LRIRLQKAVGDRLAAETVARWNESA-AQPWQIWLQNGRETRKHPADAPALAYTLPAYDLT 251

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLA 236
           + Y    + FTQ N  +N  ++   LAA +   G  +L+ +CG GNF+L LAR    VL 
Sbjct: 252 MPY--APDDFTQVNKALNRELVTQALAALQVPPGARVLDFFCGLGNFTLPLARSGADVLG 309

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E  +  V  A                          RR   F           + +   
Sbjct: 310 LEGVEEMVVRA-----------TANAAAHGLAARCQFRRADLFTVTAKQLKAWGKAERWL 358

Query: 297 VDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYT 353
           +DPPR+G       +    A   I+Y+SCNP +L RD  IL+   + +    L   F  T
Sbjct: 359 LDPPRAGAQALCEALDGKHAPARIVYVSCNPGTLARDAGILAQKGYRMASGRLLHMFAQT 418

Query: 354 RHMECGVLLVRK 365
            H+E   + VRK
Sbjct: 419 AHVESLAVFVRK 430


>gi|261337560|ref|ZP_05965444.1| putative tRNA (Uracil-5-)-methyltransferase [Bifidobacterium
           gallicum DSM 20093]
 gi|270277973|gb|EFA23827.1| putative tRNA (Uracil-5-)-methyltransferase [Bifidobacterium
           gallicum DSM 20093]
          Length = 441

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 141/380 (37%), Gaps = 61/380 (16%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWHDGDDLYHIM 62
           + QL  K D ++Q M      ++ +   + P       +H+R R E  I  D       M
Sbjct: 93  DGQLKWKADVVKQQMHRLGHLDVDVPIEALPGDDETGGLHWRTRIEL-IADDQGKPS--M 149

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
             + +  R+ ID     S         +++  R E +             + +Q I   +
Sbjct: 150 RRRGSHVRVPIDDMPLAS-------QALLSVARNERVWDGGF--------EPNQQIRIAV 194

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                     +  +     +    Y I + G     ++   +  + E + V GRT  +  
Sbjct: 195 PEPRDVYVPPQPDLDWLAQVVGDNYAILVDG-----QVKAGKRNLTETIDVQGRTFTFTV 249

Query: 183 IENSFTQPNAGINVHMLEWVL-----AATKGIQGDLLELYCGNGNFSLVLARHFD----- 232
             N F Q +      + E VL     A        + +LY G+G F+L LA         
Sbjct: 250 DANGFWQMHRMAPQRLPEHVLYLVRLALQGKTDPVIWDLYSGSGLFTLPLAALAGAVNGA 309

Query: 233 -----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                RVL+VE A  +V+ AR NI A  ++NV  +     +             L  +  
Sbjct: 310 DGTGARVLSVEGAPQAVKNARLNIKAAGLSNVTALCGDVAKT------------LHHVPA 357

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTIERL 344
                  + +DPPR+G        + A     ++YI+C+P SL RD + L    + +  +
Sbjct: 358 ELAHPDVVVLDPPRAGAKAQVCRQIAASGAQAVVYIACDPASLARDTATLTEEGYELRDI 417

Query: 345 ALFDQFPYTRHMECGVLLVR 364
             FD +P T H+E   LL R
Sbjct: 418 RAFDLYPMTHHVETVALLTR 437


>gi|85712955|ref|ZP_01043994.1| SAM-dependent methyltransferase [Idiomarina baltica OS145]
 gi|85693193|gb|EAQ31152.1| SAM-dependent methyltransferase [Idiomarina baltica OS145]
          Length = 446

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 143/366 (39%), Gaps = 37/366 (10%)

Query: 13  QLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
           Q   K   + ++          +P  +   ++   YR +A   I+     + +       
Sbjct: 102 QRRHKQQVVTELFAKMAGVRDELPWHETLIADDWQYRRKARLAIYQRNTAEPMRLGFRAH 161

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            +K  + I   +     +N ++ ++ + +  E  +  KL  I+ +  ++    + L   +
Sbjct: 162 SSKHIVDIPQCVVLDSALNRVLDDLRSILY-EAQIGPKLGHIELI--KARDVHLCLRITQ 218

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            L     +C         +   Q  L     +    L  D V    T+ G  L++  +  
Sbjct: 219 SLSSEQEKCLRAF-----SSDSQCTLWLDDGQQITSLAEDVVCFDETIDGDRLVF--MPG 271

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F Q NA +N  M++  L        D +L+L+ G GNF+L LAR    V AVE      
Sbjct: 272 NFIQVNAKVNQQMVKQALNWLAPQAEDEILDLFAGIGNFTLPLARRVKSVTAVEGVSAMT 331

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                N AA  ++NV             +  ++    LK        F+ + +DP R+G 
Sbjct: 332 TQLAANAAAADLSNVHAQTFD-------LSTDQVSRLLKK------GFQRVLLDPARAGA 378

Query: 305 DDATVGMVQAYP-----HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMEC 358
           +    G+ Q         I+Y+SC+PD+L RD   +L   + I  ++L D F  T H+E 
Sbjct: 379 EKVCQGIAQLEADKQPVQIVYVSCSPDTLARDSRWLLDNGYEITHISLVDMFVQTHHIET 438

Query: 359 GVLLVR 364
            V   +
Sbjct: 439 MVSFKK 444


>gi|18977199|ref|NP_578556.1| putative RNA methyltransferase [Pyrococcus furiosus DSM 3638]
 gi|50401623|sp|Q8U2K7|Y827_PYRFU RecName: Full=Uncharacterized RNA methyltransferase PF0827
 gi|18892856|gb|AAL80951.1| putative RNA methyltransferase [Pyrococcus furiosus DSM 3638]
          Length = 409

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 151/376 (40%), Gaps = 44/376 (11%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLY 59
            G L    +YE+QL  K    +++         +I  S     +R  + F +  +G  L 
Sbjct: 68  GGCLWQGMKYEEQLKFK----KELFRRITGIEAEILGSPRIWEFRNISNFIVSVNGIGLK 123

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQIDYLTSQ 113
                +   +      F   + L    M E +    L+P       +     +    T  
Sbjct: 124 EFARPKTVVDLKECPVFSNRTPLYIRAMKEFLRESGLKPWNWKEGDVHYLQVREGKFTG- 182

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
             + +V +I HR  ++   E      D+++    + +    + +     +++++ E++  
Sbjct: 183 --EVMVNIIAHRPPEETILEYFP-FADSVYWSIKRDKRDDPSGEPIHLGEKEFISEKI-- 237

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
               + Y      F Q N+     +L+ V     G +  +L+LY G G FSL L +    
Sbjct: 238 --FGIKYLLRPGIFFQTNSYALPLLLKAVEGFLDGSK--VLDLYSGIGTFSLYLTKKGFN 293

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ VEI K +VE A+ +   N + NV+     ++E                   +   + 
Sbjct: 294 VVGVEINKTAVEVAKLSAELNSL-NVEFKAKRAEE------------------ENIEGYD 334

Query: 294 TIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFP 351
            + +DPPR GL +    + +  P +++Y+SCNP     D    LS ++ +E   L D FP
Sbjct: 335 ALILDPPRKGLGEFAGVVEKKGPENVVYVSCNPKRFILDFKNYLSRSYKVEDAILIDMFP 394

Query: 352 YTRHMECGVLLVRKPS 367
           +T H+E  + L RK S
Sbjct: 395 HTPHVEAVIKL-RKYS 409


>gi|282599565|ref|ZP_06257306.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia
           rustigianii DSM 4541]
 gi|282568519|gb|EFB74054.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Providencia
           rustigianii DSM 4541]
          Length = 331

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 119/346 (34%), Gaps = 38/346 (10%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIR 95
                +R +A+  +    +     + ++            +      +   +   +A   
Sbjct: 6   GPSEGFRNKAKMVVSGSVEKPIFGIINRDGIAVSLTDCPLYPAEFSPVFEQLTPFIARAG 65

Query: 96  LEPL--------LRAKLFQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIRLRDALHAR 145
           L P         L+  L      T Q     V     +   L +A      +L + L   
Sbjct: 66  LTPYNIERKRGELKYILLTQSRQTGQFMLRFVLRSEKKIEQLINALPWLQEKLPE-LSVI 124

Query: 146 KYQIQLIGRA---NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
              IQ +  A    + +I L   +    L      +       SF Q N  +   + +  
Sbjct: 125 TANIQPVHMAILEGEQEIMLTEQHA---LREVFNQVPLFIRPQSFFQTNPIVAAKLYQTA 181

Query: 203 LAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
               + +    L +L+CG G F L  A    ++  +EI  P++E AR +     +  V+ 
Sbjct: 182 REWVQELTISSLWDLFCGVGGFGLHCADQNIKLTGIEICAPAIECARQSAQELGLQKVEF 241

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHIL 319
             + S  F  +                      + V+PPR G+       +      +IL
Sbjct: 242 QALDSTNFATS---------------RQDIPDLVLVNPPRRGIGKNLCNYLSDMHPEYIL 286

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           Y SCN  ++  DL  LS  + + ++ LFD FP+T H E   LL RK
Sbjct: 287 YSSCNAQTMAEDLQQLS-GYQVCKVQLFDMFPHTAHYEVLCLLKRK 331


>gi|19113979|ref|NP_593067.1| tRNA (m5U54) methyltransferase Trm2 (predicted)
           [Schizosaccharomyces pombe 972h-]
 gi|1351598|sp|Q09833|YAD7_SCHPO RecName: Full=Uncharacterized RNA methyltransferase C4G8.07c
 gi|1022352|emb|CAA91208.1| tRNA (m5U54) methyltransferase Trm2 (predicted)
           [Schizosaccharomyces pombe]
          Length = 527

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 67/391 (17%), Positives = 129/391 (32%), Gaps = 83/391 (21%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--------LQIFRSEPIHYRMRAEFHI- 51
            G    +  Y++QL +K   + +    +   +          +      +YR +   H  
Sbjct: 189 GGCQYQMLSYDKQLLQKKRVVEKAFQYYSKLDSSLLPAIKDTVGSPLQYNYRTKITPHFD 248

Query: 52  ---WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID 108
                    L     ++  +  M I+     +  IN    +++  ++       +   I 
Sbjct: 249 VPKGGTKGPLIIGFQEKGRRRVMDIEECPIATKTINEEYPKIIEDVQSRANTFKRGATIL 308

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
              S ++        H ++ D       +  D                            
Sbjct: 309 MRDSATEDG-----KHCVITDHKMIVREQFGD---------------------------- 335

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--------LLELYCGN 220
                    L +     +F Q N  I      +V        G          ++ YCG+
Sbjct: 336 ---------LSFTFPAGAFFQNNNSILEKFTSYVREQLLNPFGRKEHQRPKYFVDAYCGS 386

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G FS+  ++ F  V+ VEI+  SV  A  N   N+V+N   +   +++   ++       
Sbjct: 387 GLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQAEKIFSSIE------ 440

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL--- 335
                         + +DPPR G D + +  +  Y    I+YISCN  +  RD+  L   
Sbjct: 441 -------TPPNETAMVIDPPRKGCDQSFLNQLLEYSPYRIVYISCNVHTQARDVGFLLSQ 493

Query: 336 --STTHTIERLALFDQFPYTRHMECGVLLVR 364
               ++ I+ +  FD FP + H+E  + L +
Sbjct: 494 EKGRSYKIDEIRGFDLFPQSHHVESILTLTK 524


>gi|73748826|ref|YP_308065.1| RNA methyltransferase [Dehalococcoides sp. CBDB1]
 gi|73660542|emb|CAI83149.1| RNA methyltransferase, TrmA family [Dehalococcoides sp. CBDB1]
          Length = 393

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 136/373 (36%), Gaps = 71/373 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRS-EPIHYRMRAEFHIWHDGDD 57
             T     Y  QL  K   +         F +    +  S E   YR  A   I+H    
Sbjct: 82  GCTFQHINYIHQLQLKHRIVTAEFEKAELFGIDISPVVPSDEESGYRNHARLSIYH---- 137

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                 ++ ++  ++ID+    +  IN ++  +            +   I Y +++ +  
Sbjct: 138 ANLGFVNRFSRRHIQIDHCRIMNPGINKVLAGLQGKCG-----ETRQISIRYGSNKDNYL 192

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I   +    +D                        G+     I L  +            
Sbjct: 193 IQPKLVKANVDIE---------------------SGQKEYHDILLGHN------------ 219

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVL 235
             +     SF Q N      M   ++     + G   L++ Y G G F+++L+    RV+
Sbjct: 220 --FCISAASFFQVNNPQAEKMAN-LIKNHLNLSGSETLVDAYAGVGTFAVLLSPDCKRVI 276

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           A+E +  +V+ A  NI+   ++N+++++  +++                      +   +
Sbjct: 277 AIEESAAAVKDACLNIS--GIDNIELIQSKTEDVINQFEG---------------QMDAL 319

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352
            +DP RSG   + +  +   P  +++Y++C+P SL RDL  +L+    +  +   D FP 
Sbjct: 320 ILDPSRSGAHPSVLATICQNPPRNLVYVACDPSSLARDLKILLAGPFELSSVIPVDMFPQ 379

Query: 353 TRHMECGVLLVRK 365
           T H+E   LL  K
Sbjct: 380 TYHVETLALLKCK 392


>gi|296103158|ref|YP_003613304.1| 23S rRNA methyluridine methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057617|gb|ADF62355.1| 23S rRNA methyluridine methyltransferase [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 379

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 138/384 (35%), Gaps = 39/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     QQL  K+  L+Q++    V             +R +A+  +    +    
Sbjct: 13  SCQWIEQPVSQQLTAKMADLQQLLAEHAVGEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + A +   +A   L P      R +L  +    SQ 
Sbjct: 73  GMLHRDGTPEDLTGCPLYPASFEPVFAALKPFIARAGLTPYNVARKRGELKYLLLTESQM 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    KT+I     
Sbjct: 133 DGGMMLRFVLRSQAKLEQLRAALPWLQEQLPQ-LKVITANIQPVHMAIMEGKTEIFFTGQ 191

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
           +    L      +       SF Q N  +   +        + +    + +L+CG G F 
Sbjct: 192 HA---LAETFNNVPLWIRPQSFFQTNPTVASALYATARDWVRALNIHHMWDLFCGVGGFG 248

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  A    ++  +EIA  ++  A+ + A   + N+    + S +F               
Sbjct: 249 LHCATPEMQLTGIEIAAEAIACAKQSAAELGLTNLHFQALDSTQFATG------------ 296

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIE 342
                   + + V+PPR G+  A    +   A  +I+Y SCN  ++  D++ L   + IE
Sbjct: 297 ---QGNVPELVLVNPPRRGIGKALCDYLSQMAPDYIIYSSCNARTMATDIAHL-PGYRIE 352

Query: 343 RLALFDQFPYTRHMECGVLLVRKP 366
           R+ LFD FP+T H E   LL R P
Sbjct: 353 RVQLFDMFPHTAHYEVLTLLTRIP 376


>gi|329947297|ref|ZP_08294564.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           sp. oral taxon 170 str. F0386]
 gi|328525514|gb|EGF52558.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           sp. oral taxon 170 str. F0386]
          Length = 412

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 138/387 (35%), Gaps = 42/387 (10%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           QL  K  R+  ++      +L      S P  +R +A+  +          + D      
Sbjct: 32  QLVAKQSRVAALLAEHVPADLWETPAASAPERFRNKAKMAVAGTTARPTLGILDAAGHG- 90

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYLTSQSDQAIVTLI- 122
           + +         I A +  +   +          P  R +L  I    S  D  +V  + 
Sbjct: 91  VDLRTCPLHVPAIEAALPVLADLVTDLGLHPYDVPARRGELKHILVTASPDDDLMVRFVL 150

Query: 123 -------YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
                  + R      R    +L  A    +   Q +    +  +  + D +  RL++  
Sbjct: 151 RSRRHVGHLRAALPDLRRSLPQLAVAGVNIQGVHQAVIEGPEEIVLTEEDRLLMRLSLPA 210

Query: 176 R-------------TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNG 221
                          L       SF Q N  +   +     +  +  +   + +L+CG G
Sbjct: 211 SSGGASAVRCADDVELPLYLPTRSFFQTNTAVAEALYATARSWVEESEPARVWDLFCGVG 270

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREF 279
            F+L LA    RVL VE++  +++ A    A   ++   V+     ++    A       
Sbjct: 271 GFALALAAPGRRVLGVEVSASAIDGAHAAAALMGLDPALVRFEAGDARVLDPAAPGAGAL 330

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST 337
                    +     + V+PPR G+ +   G ++A     +LY SCNP +L  DL+ L +
Sbjct: 331 GVCG-----ARGPDLLVVNPPRRGIGERLAGRIEASGVERVLYSSCNPRTLAADLARLPS 385

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
              + R  LFD FP+T H E  V LVR
Sbjct: 386 M-RVVRSRLFDMFPHTDHAEVLVELVR 411


>gi|328479439|gb|EGF48724.1| RNA methyltransferase [Lactobacillus rhamnosus MTCC 5462]
          Length = 193

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 19/208 (9%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
              + Y+ E L+       ++    +F Q N      +      A +    D L++ YCG
Sbjct: 2   LAGQPYIQETLS----GRTFQLSPQAFLQLNPKQTEQLYAIAKDALQLAPDDTLIDAYCG 57

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   + LA     +  ++    ++  A+ N   N  NN       ++       +E   
Sbjct: 58  IGTVGMSLANRHQSIYGMDTIPEAIADAKANAKNNGFNNTHYFVGKAETLFPKWLKE--- 114

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILST 337
                          + VDPPRSGL+   +  ++Q  P    YISCNP +L RDL  L+ 
Sbjct: 115 ---------GIHPNAVIVDPPRSGLERPFIDALLQLNPQKFAYISCNPSTLARDLVPLAK 165

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + ++ +   D FP T   E  V   R+
Sbjct: 166 HYQVDWIQSIDMFPQTARCEAVVKFTRR 193


>gi|320094745|ref|ZP_08026494.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319978309|gb|EFW09903.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 391

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 80/390 (20%), Positives = 138/390 (35%), Gaps = 43/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
           S  L+   Y  QLA+K   +R  + +      +  L    SEP  +R  A+  +      
Sbjct: 13  SCALIEAPYPDQLADKARSVRAALASVPGAPGIRWLSPVASEPRGFRTSAKLVVGGTARR 72

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYL 110
                     +  + +         +N   + +   IR         P  R +L  I   
Sbjct: 73  PSLGALGPD-RRGVDLPGCPIQHPAVNRASVGLKRFIRALSLTPYDVPTRRGELKNILIT 131

Query: 111 TSQSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV-- 167
               ++ +V  +   R      R     LR  + +       I  A++ ++    + V  
Sbjct: 132 VGADERLMVRFVLRSRDRVADIRRALPHLRQLVPSVHVVTANIHPAHEARVEGPEEIVLT 191

Query: 168 -DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK------GIQGDLLELYCGN 220
               L +    L       SFTQ NA +   +                    L +LYCG 
Sbjct: 192 RRRTLPLDAGGLRLELGPRSFTQTNAAVAGRLYRQAAQWASLPLPGGAAPSSLWDLYCGV 251

Query: 221 GNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRRE 276
           G F+L  A H     V  VE+++ ++ +A     A  +  +  + V   +  + +A    
Sbjct: 252 GGFALH-ASHAGVPAVTGVEVSEAAIASAISRARALGLTRDQARFVADDATAWARAQSA- 309

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
                       S     + V+PPR G+       +     P ++Y SCNP +L +DL+ 
Sbjct: 310 ------------SGAPDVVVVNPPRRGIGLELASWLDGCTAPRVIYSSCNPTTLAKDLAA 357

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + +        +FD FP+T H+E  VLL R
Sbjct: 358 MPSL-RTTHGRVFDMFPHTAHVEAAVLLER 386


>gi|213421252|ref|ZP_03354318.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 170

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 15/181 (8%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  +N  M+   L        D +L+L+CG GNF+L LA     V+ VE  +  VE
Sbjct: 1   FIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVQALVE 60

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
             R N   N ++NV     + +E             +         F  + +DP R+G  
Sbjct: 61  KGRENAIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAT 108

Query: 306 DATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
                +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  
Sbjct: 109 GVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFE 168

Query: 364 R 364
           R
Sbjct: 169 R 169


>gi|319942368|ref|ZP_08016682.1| hypothetical protein HMPREF9464_01901 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804056|gb|EFW00964.1| hypothetical protein HMPREF9464_01901 [Sutterella wadsworthensis
           3_1_45B]
          Length = 496

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 127/404 (31%), Gaps = 54/404 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--------IHYRMRAEFHIWH 53
              L   +Y  +LA K   L +  L       +     P         H+R +A  +   
Sbjct: 105 GCPLGSLKYSAELALKTKLLIEEPLRQAGLWREGLIEPPSGQPKAFAQHFRNKAVLYPSV 164

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI--------------RLEPL 99
                    +  +++  +  +      + +      +   +                  +
Sbjct: 165 IDGIGRFGYYAARSQILVPAEDCPQTPVWMGEAARALAPFLCEPALTPAPEAAVSNGTGV 224

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD--------ALHARKYQIQL 151
           LR  L +    + +    +V       L  A  +    L           +H       L
Sbjct: 225 LRCLLLREAPGSGERMAVLVVRALTADLLAAKEKLIAALAPCKLQSLLVNVHPTPGSAVL 284

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
               +   +   R  ++  L      L +     +F Q N    + + E  L A     G
Sbjct: 285 SFAPDALVVWAGRSSIEAELM----DLAFTVGPQTFLQVNTPQTLVLYEKALDAADVQSG 340

Query: 212 D-LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           D +L+LYCG G  +L  AR      R L VE  + S+  A  N A N +     V   ++
Sbjct: 341 DQILDLYCGVGTITLAAARRAGPHGRALGVERVEASIVCASENAARNSIPQAAFVAEPTE 400

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-------AYPHILY 320
            F  A  +E   +         ++   I VDP   G+       +            + Y
Sbjct: 401 TFLSAALKEGFPD--------GFKPTKIIVDPAYQGMAGGAAKALADLFSLPNGPKRLAY 452

Query: 321 ISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           +SCNP S  RD   L+    T+E ++  D FP   H+E      
Sbjct: 453 VSCNPKSFARDAKELAVAGLTLESISPVDLFPGAMHLELVAAFS 496


>gi|114685143|ref|XP_514989.2| PREDICTED: HpaII tiny fragments locus 9C isoform 6 [Pan
           troglodytes]
          Length = 643

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/439 (17%), Positives = 131/439 (29%), Gaps = 94/439 (21%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 179 PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQTE 238

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 239 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 298

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDALHA--- 144
                           Q+   TS+  QA+    +H  +L  +   E    L     A   
Sbjct: 299 TPYSAYDPETYTGHWKQLTVRTSRRRQAMAIAYFHPQKLSPEELEELKTSLAQHFTAGPG 358

Query: 145 -RKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                  L       +       + L+    D  +      L +R   ++F Q N     
Sbjct: 359 RASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR------------------HFDRVLAV 237
            +   +    +   G  +L++ CG G   L LAR                     RV+ V
Sbjct: 419 VLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARGPMYSPPWVGRHHAFLFQKVKRVIGV 478

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+   +VE AR N   N ++NV+     +++    +        L              +
Sbjct: 479 ELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPTLVSRLASQHL-----------VAIL 527

Query: 298 DPPRSGLDDATVGMVQAYP---HILYISCNPDSLCRDLSILST---------THTIERLA 345
           DPPR+GL    +  ++       +LY+SCNP +   +   L                +  
Sbjct: 528 DPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGIPFRPVKAV 587

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H E  +L  R
Sbjct: 588 AVDLFPQTPHCEMLILFER 606


>gi|328866133|gb|EGG14519.1| hypothetical protein DFA_12295 [Dictyostelium fasciculatum]
          Length = 728

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/432 (18%), Positives = 142/432 (32%), Gaps = 87/432 (20%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV----------------------------PNLQIFRSEP 40
            Y++QLA K   + +++                                 P  ++  S  
Sbjct: 229 DYQEQLARKKKYVTKVLADIVPAVKKDCGYNNTGKFPDWLKNATKNTPCCPLEEVVASPV 288

Query: 41  I-HYRMRAEFHIW--HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL- 96
           +  YR +  + I    DG         +       +     G  +I+A    + A +   
Sbjct: 289 VDGYRNKCSYTIGLLSDGTPCVGFALGRTANGVTVVGD-PSGCRIISARSNAIRAHLETY 347

Query: 97  ---------EPLLRAKLFQI----DYLTSQSDQAI------VTLIYHRLLDDAWRECAIR 137
                    E       ++     D+ T ++   +      V     +   D        
Sbjct: 348 VRASALKPYEKTTHTGFWRQLTVRDFTTGEAMATVQVGPQGVAADVVKETIDGLTAHFKD 407

Query: 138 LRDALHARKYQIQLIGRANKTK---------ICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           L     A     Q+      +               D+V E+L        ++   N+F 
Sbjct: 408 LPADSQAHVTSFQVQYYDGVSNAAPVDHPVTTVYGPDHVHEKLL----GYEFQVSSNAFF 463

Query: 189 QPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q N+     +   VL          LL++ CG G     ++ +   +  +E+A  +V+ A
Sbjct: 464 QVNSAATEKLYSKVLEWADCAKDTVLLDVCCGTGTIGQCVSGNVRHIYGLELAPDAVKDA 523

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRRE---REFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             N   N++ NV  +   +++    +         N +KD DI         VDPPRSGL
Sbjct: 524 IKNAQHNNITNVDYLVGKAEDTMSGLVSRIHNTFGNTVKDGDIIG------IVDPPRSGL 577

Query: 305 DDATVGMVQ---AYPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPY 352
               +  ++   A   ++Y+SCN +SL +D + LS               +   FD FP+
Sbjct: 578 HLDVIKALRGFEAMKRLVYVSCNQNSLIQDAAKLSKTITNNMRGTPFRPVKAIAFDLFPH 637

Query: 353 TRHMECGVLLVR 364
           T  +E  VL  R
Sbjct: 638 TELVEVVVLFER 649


>gi|254581166|ref|XP_002496568.1| ZYRO0D03124p [Zygosaccharomyces rouxii]
 gi|238939460|emb|CAR27635.1| ZYRO0D03124p [Zygosaccharomyces rouxii]
          Length = 591

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 140/398 (35%), Gaps = 48/398 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV----------PNLQIFRSEPIHYRMRAEFHI 51
                   YE+QL  K + +      F                I     + YR +   H 
Sbjct: 206 GCQFQFLTYERQLELKRNTIVNAYRYFAPRLVVEKLVQEVGETIGSPLKLGYRTKLTPHF 265

Query: 52  WHDGDDLYH----IMFDQQTKERMRIDYFMPG---SLLINALMIEMMATIRLEPLLRAKL 104
                        + F Q+ K++ R D    G   S+L           + +      + 
Sbjct: 266 DMPRRKQLEDRPPLGFGQKGKQKWRKDNLEIGGTGSILDIEECPIGTPAVNMGMSNERQK 325

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-ICLD 163
           F  DY   +    I+      +L+ +       + +     + +I  +   +K K I L 
Sbjct: 326 FDTDYQNYRKGATILLRENTTILNGSEETREQLMDNGSKNEQGEISFVETEDKEKDIKLA 385

Query: 164 RDYVD---ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA------TKGIQGDLL 214
           +  V    + +        ++     F Q N  I   + ++V                L+
Sbjct: 386 KTCVTNTRQVVREYVDGYTFKFSAGEFFQNNNSILPLVTKYVRENLQIPNSEPNAPNYLV 445

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           + YCG+G FS+  ++   +V  VEI+  SV  A  N   N V N K +   +++  +++ 
Sbjct: 446 DAYCGSGLFSICSSKGVAKVTGVEISADSVSFAETNAKNNGVENCKFIVGKAEKLFESID 505

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL 332
              +               ++ +DPPR G D+  +  +  Y    I+YISCN  S  RD+
Sbjct: 506 TPNDR-------------TSVILDPPRKGCDELFMRQLSEYYPARIVYISCNVHSQARDV 552

Query: 333 SIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
                       + IE L  FD FP T H+E   ++ R
Sbjct: 553 EFFLKDTERGKDYKIESLRGFDFFPQTHHVESVCVMSR 590


>gi|196010802|ref|XP_002115265.1| hypothetical protein TRIADDRAFT_59271 [Trichoplax adhaerens]
 gi|190582036|gb|EDV22110.1| hypothetical protein TRIADDRAFT_59271 [Trichoplax adhaerens]
          Length = 556

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/410 (19%), Positives = 143/410 (34%), Gaps = 67/410 (16%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L    Y+QQL  K + L +++         I   E  +YR + EF I  D  D   I   
Sbjct: 164 LWDKSYDQQLKIKKNNLDRILRKCTSKLEAIKVPEINNYRNKCEFAIGQDSKDEVVISVR 223

Query: 65  QQTKERMRIDYFMPGSL------------------------LINALMIEMMATIRLEPLL 100
                  R+  +  G+L                        LI    + + + +      
Sbjct: 224 AGIAVGFRLGSYREGNLSVVPPTDCANVPEEAKAIAKAMQSLIQQSSLPVYSFVDHTGYW 283

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-- 158
           R    + + L      AIV L    L +D  +     +   L     Q+  +    +T  
Sbjct: 284 RQICVRRNLLGQLM--AIVQLHPQDLSEDQLQSLKDEINRCLEKCDCQVVSVYLQKQTTR 341

Query: 159 ----------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                     +I     Y+ E        + +R   +SF Q N      +   +      
Sbjct: 342 SSAGNAGSVYEIISGSKYLYE----DFLGMKFRISPSSFFQGNTLAAEVLYRNIRDWCPT 397

Query: 209 IQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
               + L++ CG G   +++A++ +RV+ +E+ + ++E AR N   N + N++ +   ++
Sbjct: 398 KATTVVLDICCGTGTIGILMAKNVNRVIGIEMVEDAIEDARVNAELNDIKNIEFICGKAE 457

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTI-FVDPPRSGLDDATVGMVQA---YPHILYISC 323
           +    +           +D  S   + I  VDPPR+GL    +  ++       ++Y+SC
Sbjct: 458 DKLPTL-----------VDNLSVISEVIAIVDPPRAGLHTRVIKALRRSLFIKKLIYVSC 506

Query: 324 NPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVLLVR 364
           NP     +   L              I +    D FPYT   E  +   R
Sbjct: 507 NPAMAVTNFVELCSPRTNRLRGQPFKIMKALAVDLFPYTEQCELVLQFER 556


>gi|148826391|ref|YP_001291144.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           PittEE]
 gi|229846018|ref|ZP_04466130.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           7P49H1]
 gi|167012641|sp|A5UDB0|RUMB_HAEIE RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|148716551|gb|ABQ98761.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittEE]
 gi|229811022|gb|EEP46739.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           7P49H1]
          Length = 392

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 142/396 (35%), Gaps = 50/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y+QQ+AEK   L+Q +++    +   L  F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYDQQIAEKQHHLKQQLISLDCSDVHWLAPFKSNEQGFRNKAKMLVSGSVERP 73

Query: 59  YHIMFDQQTKERMRIDYF-----MPGSLLINALMIEMMATIRLEPL--------LRAKLF 105
              +       +  ID            +I +++ + +    L P         L+  L 
Sbjct: 74  ILGILKNPNDPQSAIDLCDCPLYPAHFSIIFSILKDFIGRAGLVPYNIAKQKGELKYILL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKI 160
                T +     V    ++ L    RE    L    H     I L  +       + +I
Sbjct: 134 TESIATGKLMLRFVLRTENK-LPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEI 192

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219
            L      + L      +        F Q N  +   +              +L +L+CG
Sbjct: 193 FLTE---QQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCG 249

Query: 220 NGNFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            G F L  A+              +EI+  ++ AA ++     + +V    +++    + 
Sbjct: 250 VGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLNAASVME- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
                        + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +
Sbjct: 309 -------------NKNENKPDLVIVNPPRRGIGKQLSEFLNQIQPHFILYSSCNAMTMGK 355

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           DL  L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 356 DLQHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 390


>gi|161501856|ref|NP_763285.2| 23S rRNA methyluridine methyltransferase [Vibrio vulnificus CMCP6]
 gi|50401569|sp|Q8D4B4|RUMB_VIBVU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|319999780|gb|AAO08275.2| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio vulnificus
           CMCP6]
          Length = 376

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 158/383 (41%), Gaps = 40/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S T +   Y QQL  K + LR +     Q   L   +S+ +H R +A+            
Sbjct: 13  SCTHMNTPYSQQLETKDNALRSLFSDVEQSAWLAPVQSDSMHCRNKAKMVALGAAHQPTL 72

Query: 61  IMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAK----LFQIDYLTSQ 113
            +   Q    + + +       S  + A + E + T  + P  + K    L  +    SQ
Sbjct: 73  GIESVQDGTPISLVHCPLYTQESQELLAYLQEWIRTSGIPPYNKVKKKGELKFVLLTRSQ 132

Query: 114 SDQAIVTLIYHR--LLDDAWRECAIRLRDALHARKY---QIQLIGRAN---KTKICL-DR 164
           +    +     R     +  R    RL+ A  A +     IQ I  A    + +I L D 
Sbjct: 133 ARGEFMLRFVVRSEAALERIRHNLPRLQQAFPAVRVISANIQPIHMARLEGEQEIFLTDA 192

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y+ E        +       SF Q N  +   +          ++   + +L+CG G F
Sbjct: 193 HYLLEEF----NGVPMVVRPKSFFQTNPHVAAQLYATARNWVAELKPRQMWDLFCGVGGF 248

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L  A H ++V+ +EI + ++ +A+ +     ++N++   + S  ++QA  +        
Sbjct: 249 ALHCAPHAEQVIGIEIEEEAINSAKLSAQQLGIDNLRFSALDSAAYSQAQTQAA------ 302

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                      I V+PPR GL  A    ++  A  +++Y SCNP ++ +DL+ L + + +
Sbjct: 303 ---------DLILVNPPRRGLGQALSEQLEQLASQYLIYSSCNPVTMQQDLAHLPS-YRV 352

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           ER   FD FP+T H E  +LLVR
Sbjct: 353 ERAQWFDMFPHTDHAEVMMLLVR 375


>gi|114561765|ref|YP_749278.1| 23S rRNA methyluridine methyltransferase [Shewanella frigidimarina
           NCIMB 400]
 gi|122300808|sp|Q087X5|RUMB_SHEFN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|114333058|gb|ABI70440.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella
           frigidimarina NCIMB 400]
          Length = 377

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 132/373 (35%), Gaps = 41/373 (10%)

Query: 12  QQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           +Q++ K  +L  +     V   L    S    +R +A+  +          + + + +  
Sbjct: 23  EQVSVKQQQLIDLFRGISVKQWLAPILSAESGFRNKAKMVVLGAAHKPILGLVNPKGEPV 82

Query: 71  MRIDY--FMPGSLLINALMIEMMATIRLEPL--------LRAKLFQIDYLTSQSDQAIVT 120
              D   +     L+   +   +    + P         L+  L      + Q     V 
Sbjct: 83  SLCDCSLYPKDMQLLLHRLERFVQQAGIPPYRVDKSKGELKFILLTRSQSSGQFMLRFVL 142

Query: 121 LIYHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRANKTKICLDRD---YVDE--RLTV 173
                ++    RE    L++   +      IQ I  A      L+ +   ++ E  RL  
Sbjct: 143 RSDQAIVRIE-RELPQLLQEFPEITLVSANIQPIHMA-----ILEGEREIFLTETTRLEE 196

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
               +       SF Q N  +   + +         + + + +L+CG G F L  A    
Sbjct: 197 QLNNVPLFIRPKSFFQTNPEVAAQLYQIAREWVTEFKPNYIWDLFCGVGGFGLHCADSNI 256

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           R+  +EI   ++E A  +        V    + S  F +    +              + 
Sbjct: 257 RLTGIEIESEAIECAILSATKLGFTQVDFSALDSTHFAKGQSAQD-------------KP 303

Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
             I V+PPR GL  +    +   A   I+Y SCNP +L  DL  ++  + I ++ +FD F
Sbjct: 304 DLIIVNPPRRGLGKSLCDSLSEFAPKAIVYSSCNPHTLMSDLEYIT-GYQITKVQMFDMF 362

Query: 351 PYTRHMECGVLLV 363
           P+T H E  V+L 
Sbjct: 363 PHTDHFEVLVMLE 375


>gi|37200429|dbj|BAC96255.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016]
          Length = 397

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 157/383 (40%), Gaps = 40/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S T +   Y QQL  K + LR +     Q   L   +S+ +H R +A+            
Sbjct: 34  SCTHMNTPYSQQLETKDNALRTLFSDVAQSAWLAPVQSDSMHCRNKAKMVALGAAHQPTL 93

Query: 61  IMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAK----LFQIDYLTSQ 113
            +   Q    + + +       S  + A + E + T  + P  + K    L  +    SQ
Sbjct: 94  GIESVQDGTPISLVHCPLYTQDSQALLAYLQEWIRTSGIPPYNKVKKKGELKFVLLTRSQ 153

Query: 114 SDQAIVTLIYHR--LLDDAWRECAIRLRDALHARKY---QIQLIGRAN---KTKICL-DR 164
           +    +     R     +  R    RL+ A  A +     IQ I  A    + +I L D 
Sbjct: 154 ARGEFMLRFVVRSEAALERIRHNLPRLQQAFPAVRVISANIQPIHMARLEGEQEIFLTDA 213

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y+ E        +       SF Q N  +   +          ++   + +L+CG G F
Sbjct: 214 HYLLEEF----NGVPMVVRPKSFFQTNPHVAAQLYATARDWVAELKPRQMWDLFCGVGGF 269

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L  A H ++V+ +EI + ++ +A+ +     + N++   + S  ++QA  +        
Sbjct: 270 ALHCAPHAEQVIGIEIEEEAINSAKLSAQQLGIGNLRFSALDSAAYSQAQTQAA------ 323

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                      I V+PPR GL  A    ++  A  +++Y SCNP ++ +DL+ L + + +
Sbjct: 324 ---------DLILVNPPRRGLGQALSEQLEQLAPQYLIYSSCNPVTMQQDLAHLPS-YQV 373

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           ER   FD FP+T H E  +LLVR
Sbjct: 374 ERAQWFDMFPHTDHAEVMMLLVR 396


>gi|307250368|ref|ZP_07532316.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857578|gb|EFM89686.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 391

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 144/395 (36%), Gaps = 48/395 (12%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGD 56
           +S   L   Y  QL +K   L++++  F + N    L   +S    +R +A+  +    +
Sbjct: 14  VSCQWLEKPYATQLTDKEIDLKRLISPFILQNFTEILPPVQSSQKQFRNKAKMVVSGSVE 73

Query: 57  DLYHIMFDQQTKERMRIDYF-----MPGSLLINALMIEMMATIRLEPLL----RAKLFQI 107
                +   QT  +  ID             I  ++ + +A   L P      + +L  I
Sbjct: 74  RPILGILKDQTDPQSGIDLCDCPLYPTEFEAIFPILKDFIARAGLVPYNIAKKKGELKYI 133

Query: 108 DYLTSQSDQAIVTLI-----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTK 159
               S+ +Q+++          R L +      +            IQ    A    +T+
Sbjct: 134 LLTQSRYNQSVMLRFVLRSEQKRPLVERELPNLLAKLPKDSVVSLNIQPQHAAILEGETE 193

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
           I L      E        +        F Q N  +   +        K +      +L+C
Sbjct: 194 IFLTEKTTIEE---NFNDIPLFIRPQGFFQTNPNVASRLYATAQNWIKDLPIQQFWDLFC 250

Query: 219 GNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           G G F L  A+          +  +EI+  ++ +A  + A   + NV    + S +F   
Sbjct: 251 GVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQFA-- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                       ++        + V+PPR G+       +     P+++Y SCN  ++ +
Sbjct: 309 ------------LNDKGKSPDLVIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQTMAK 356

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 357 DFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|322504877|emb|CBZ14664.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 604

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 21/214 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           +    LT     L +     +F Q N      ML  V    +   G  LL+L  G G   
Sbjct: 358 FGTPTLTEYLAGLCFELSPTAFFQVNTPGMETMLTKVTEVAELSTGTTLLDLCSGTGTIG 417

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L L++H  RV+ +E+ + +V  AR N   N + N +      +    ++          D
Sbjct: 418 LTLSKHVRRVIGIELVESAVANARRNAQQNGIANAEFHCGRVEHLLPSVISGLPAEDRGD 477

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILST---- 337
           I         + +DPPR+G++   +  ++       ++YISC   +L RD   L+     
Sbjct: 478 I--------VVILDPPRAGVNSTVLKWIRGMETIRRVVYISCEQKALERDCPRLTKPNTK 529

Query: 338 -----THTIERLALFDQFPYTRHMECGVLLVRKP 366
                   +      D FP+T H+E   +L R+P
Sbjct: 530 AYRGNPFEVTAAFAVDLFPHTHHVEMIAVLTRRP 563


>gi|68249546|ref|YP_248658.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           86-028NP]
 gi|81336027|sp|Q4QLU9|RUMB_HAEI8 RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|68057745|gb|AAX87998.1| hypothetical RNA methyltransferase [Haemophilus influenzae
           86-028NP]
          Length = 392

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 141/396 (35%), Gaps = 50/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQLAEK   L+Q +++    +   L  F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLAEKQHHLKQQLISINCDKAQWLAPFQSNEQCFRNKAKMLVSGSVERP 73

Query: 59  YHIMFDQQTKERMRIDYF-----MPGSLLINALMIEMMATIRLEPL--------LRAKLF 105
              +       +  ID            +I +++ + +    L P         L+  L 
Sbjct: 74  ILGILKNPNDPQSAIDLCDCPLYPARFSIIFSILKDFIGRAGLVPYNIAKQKGELKYILL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKI 160
                T +     V    ++ L    RE    L    H     + L          + +I
Sbjct: 134 TESIATGKLMLRFVLRTENK-LPLIRRELPKLLEKLPHLEVVSVNLQPLHAAILEGEQEI 192

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219
            L      + L     ++        F Q N  +   +          +   +L +L+CG
Sbjct: 193 FLTE---QQFLPENFNSIPLFIRPQGFFQTNPKVAEGLYATAQQWVSELPIYNLWDLFCG 249

Query: 220 NGNFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            G F L  A+              +EI+  ++ AA ++     + +V    + +    + 
Sbjct: 250 VGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLDAASVIE- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
                        + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +
Sbjct: 309 -------------NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGK 355

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           DL  L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 356 DLQHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 390


>gi|161486689|ref|NP_936285.2| 23S rRNA methyluridine methyltransferase [Vibrio vulnificus YJ016]
 gi|50401484|sp|Q7MFU0|RUMB_VIBVY RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
          Length = 376

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 157/383 (40%), Gaps = 40/383 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S T +   Y QQL  K + LR +     Q   L   +S+ +H R +A+            
Sbjct: 13  SCTHMNTPYSQQLETKDNALRTLFSDVAQSAWLAPVQSDSMHCRNKAKMVALGAAHQPTL 72

Query: 61  IMFDQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAK----LFQIDYLTSQ 113
            +   Q    + + +       S  + A + E + T  + P  + K    L  +    SQ
Sbjct: 73  GIESVQDGTPISLVHCPLYTQDSQALLAYLQEWIRTSGIPPYNKVKKKGELKFVLLTRSQ 132

Query: 114 SDQAIVTLIYHR--LLDDAWRECAIRLRDALHARKY---QIQLIGRAN---KTKICL-DR 164
           +    +     R     +  R    RL+ A  A +     IQ I  A    + +I L D 
Sbjct: 133 ARGEFMLRFVVRSEAALERIRHNLPRLQQAFPAVRVISANIQPIHMARLEGEQEIFLTDA 192

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            Y+ E        +       SF Q N  +   +          ++   + +L+CG G F
Sbjct: 193 HYLLEEF----NGVPMVVRPKSFFQTNPHVAAQLYATARDWVAELKPRQMWDLFCGVGGF 248

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L  A H ++V+ +EI + ++ +A+ +     + N++   + S  ++QA  +        
Sbjct: 249 ALHCAPHAEQVIGIEIEEEAINSAKLSAQQLGIGNLRFSALDSAAYSQAQTQAA------ 302

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
                      I V+PPR GL  A    ++  A  +++Y SCNP ++ +DL+ L + + +
Sbjct: 303 ---------DLILVNPPRRGLGQALSEQLEQLAPQYLIYSSCNPVTMQQDLAHLPS-YQV 352

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           ER   FD FP+T H E  +LLVR
Sbjct: 353 ERAQWFDMFPHTDHAEVMMLLVR 375


>gi|213410094|ref|XP_002175817.1| tRNA (uracil-5-)-methyltransferase [Schizosaccharomyces japonicus
           yFS275]
 gi|212003864|gb|EEB09524.1| tRNA (uracil-5-)-methyltransferase [Schizosaccharomyces japonicus
           yFS275]
          Length = 488

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 134/391 (34%), Gaps = 85/391 (21%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSE----PIHYRMRA--EFH 50
            G    + +Y +QL +K + + +    F         +I  +E      +YR +    F 
Sbjct: 140 GGCQYQMLEYSKQLEQKRNVIIKAFEYFSHLQPGQLCEIGPTESSPMEYNYRTKITPHFD 199

Query: 51  IWH----DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106
           +      +G DL     ++  +    I+     +  IN  M  + A  + +         
Sbjct: 200 VPRGGIPEGTDLVIGFQEKGRRRVFDIEECSIATKCINESMPSIFAATQAKK-------- 251

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
                S+  +    L                LRD                  K    +  
Sbjct: 252 -----SEYKRGATIL----------------LRDVFDENNEHKVETDHKAVVKEVFGK-- 288

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--------LLELYC 218
                        ++    +F Q N  I      +V +      GD        L++ YC
Sbjct: 289 -----------FTFKFPAGAFFQNNNSILPKFTSFVHSQLFNSFGDEKFEAPKYLVDAYC 337

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G+G FS+  +  F  V+ VEI+  SV  A+ N  AN + N + +   +++    +     
Sbjct: 338 GSGLFSITCSEGFQSVIGVEISSDSVAYAKTNAEANGIKNAEYLVGEAEKIFAKIE---- 393

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI-- 334
                           + +DPPR G D A +  +  Y    ++YISCN  +  RD+S   
Sbjct: 394 ---------TPAAETAMIIDPPRKGCDTAFLDQLLTYSPARVVYISCNVHTQARDISYIL 444

Query: 335 ---LSTTHTIERLALFDQFPYTRHMECGVLL 362
              L   + I  +  FD FP + H+E  ++L
Sbjct: 445 NHELGKDYKINDVRGFDLFPQSHHVESVLVL 475


>gi|117921747|ref|YP_870939.1| 23S rRNA methyluridine methyltransferase [Shewanella sp. ANA-3]
 gi|143582907|sp|A0L0G4|RUMB_SHESA RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|117614079|gb|ABK49533.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella sp. ANA-3]
          Length = 384

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 131/375 (34%), Gaps = 40/375 (10%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           QQLA K   L+Q++  F       F          +R +A+             +     
Sbjct: 27  QQLAAKNLELQQLLAPFVDKTEPQFLPPVVGDSSGFRNKAKMVALGAAHAPVLGIVSPSG 86

Query: 68  KERMRIDYFMPGSLL----------INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +     D  +  + +          +    I      + +  L+  L     +  +    
Sbjct: 87  EAVSLCDCLLYPTDMQALLHRLERFVQQAGIPPYRVDKAKGELKFILLTRSQVRGEYMLR 146

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKICLDRDYVDERLT 172
            V L     +    RE    + +    +   + L          + +I L  +    RL 
Sbjct: 147 FV-LRSRDAIARIERELPTLMAEYPQIKVVSVNLQPVHMAILEGEEEIFLTENT---RLE 202

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
                +       SF Q N  +   + +             L +L+CG G F L  A   
Sbjct: 203 ERFNDVPLFIRPKSFFQTNPQVAAKLYQTAREWVADFAPASLWDLFCGVGGFGLHCAAKD 262

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             +  +EI   ++  A+ +     ++ V+ + + S +F +              +    +
Sbjct: 263 IPLTGIEIEAEAIACAKMSAQLMGLDKVEFMALDSTDFAKG-------------EAAQTK 309

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349
            + I V+PPR G+ ++    +   A   ILY SCNP +L +DL  +   + + ++ LFD 
Sbjct: 310 PELIIVNPPRRGIGESLCHSLSEFAPKAILYSSCNPKTLAKDLGHI-RGYRLTKVQLFDL 368

Query: 350 FPYTRHMECGVLLVR 364
           FP++ H E   LLV+
Sbjct: 369 FPHSDHFEVLALLVK 383


>gi|242006183|ref|XP_002423933.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
           corporis]
 gi|212507203|gb|EEB11195.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
           corporis]
          Length = 587

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 143/419 (34%), Gaps = 75/419 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-------------------EPI-------H 42
            YE+QL +K   + +++  +    +++                       PI        
Sbjct: 175 PYEKQLEKKTHLIEELLKQYGNKLVKVNPKVLNWWLLQKAKYNGLPCELFPIKYSDVING 234

Query: 43  YRMRAEFHIWHDGDD------LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL 96
           YR + EF I  + ++           + Q +     +D        +          ++ 
Sbjct: 235 YRNKCEFSIGINKENGEKTVGFRLGSYAQGSTSVAPVDNVPNVPQQMKDAAKIFQKFVQN 294

Query: 97  EPLL-----------RAKLFQIDYLTSQSDQAI------VTLIYHRLLDDAWRECAIRLR 139
                          +    +  + T +    I      +T     L+ +      +   
Sbjct: 295 SEYDVFNYELNQGHWKQLTVRYGFRTKELMIIIGIVPQELTQADLSLIKNNILNYFVEGE 354

Query: 140 DALHARKYQ-IQLIGRANKT--KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             L   K   +QL+ +      ++  +  + +  +T       +R    +F Q N  +  
Sbjct: 355 GKLCQVKSLYLQLMKKKRTQNDEVLYEHLFGETYITEKILGKTFRISPQAFFQINTNVAE 414

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            + + +   ++  +   LL++ CG G+  + L+     VL +EI+  ++  A+ N   N 
Sbjct: 415 ILYDSIAELSELSKDVTLLDVCCGTGSIGICLSDKCGEVLGLEISSEAIADAKANAELNG 474

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI-FVDPPRSGLDDATVGMVQA 314
           VNN +     +++             L  + + + + + I  VDPPR+GL    +   + 
Sbjct: 475 VNNTQFFSGKAEDI------------LNCVALKATKKEIIAVVDPPRAGLPLIQIRKNKL 522

Query: 315 YPHILYISCNPDSLCRDLSILSTT----HT-----IERLALFDQFPYTRHMECGVLLVR 364
              ++Y+SC+P +  ++   L       +        +    D FP+T H E  +   R
Sbjct: 523 IKKLIYVSCDPKAAMKNFLDLGRAASKIYREEAFLPVKAIPVDLFPHTSHCELVIYFER 581


>gi|325577786|ref|ZP_08148061.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160531|gb|EGC72657.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 390

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 140/397 (35%), Gaps = 52/397 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   YEQQLA+K + L+Q +      NL     F S    +R +A+  +    +  
Sbjct: 14  SCQWLEMPYEQQLAKKEEHLKQQLAKLDCNNLICHPPFFSSESAFRNKAKMVVSGAVERP 73

Query: 59  YHIMF--DQQTKERMRI-----------DYFMPGSLLINALMIEMMATIRLEPLLRAKLF 105
              +       +  + +           + F      I    +      + +  L+  L 
Sbjct: 74  ILGILQDPNDPQSAVDLCDCPLYPKCFAELFPILKDFIGRAGLVPYNVAKQKGELKYILL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA---RKYQIQLIGRA---NKTK 159
                T +     V     +L     +     L + L         IQ    A    + +
Sbjct: 134 TESQHTKKLMLRFVLRSETKL--PLIQREFEGLLEKLPQLEVVSVNIQPQHAAILEGEKE 191

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
           I L   ++   L+ +   +        F Q N  I   +        + +    L +L+C
Sbjct: 192 IFLTDQHI---LSESFNGIPLFIRPQGFFQTNPLIAQGLYATAQDWVQDLPITKLWDLFC 248

Query: 219 GNGNFSLVLARHFD-------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           G G F L  A+           +  +EI+  +++AA  +     +NNVK   + +  F  
Sbjct: 249 GVGGFGLHCAKALQDKHQQEVELTGIEISPSAIQAATLSAQVLGLNNVKFQSLDAANFA- 307

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329
                        +     +   + V+PPR G+       + +  PH ILY SC   S+ 
Sbjct: 308 -------------LTQDENKPDLVIVNPPRRGIGKELAEFLNEMQPHFILYSSCKAISMG 354

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +DL  L+  + + ++ LFD FP+T H E   LL   P
Sbjct: 355 KDLQHLTN-YKLTQIQLFDMFPHTAHYEALALLKLNP 390


>gi|187608197|ref|NP_001120451.1| TRM2 tRNA methyltransferase 2 homolog A [Xenopus (Silurana)
           tropicalis]
 gi|170285270|gb|AAI61232.1| LOC100145545 protein [Xenopus (Silurana) tropicalis]
          Length = 613

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 138/423 (32%), Gaps = 80/423 (18%)

Query: 9   QYEQQLAEKVDR----LRQMMLAFQV---------------------PNLQIFRSE-PIH 42
            YE+QL  K +     L+Q+     V                     P  ++  S     
Sbjct: 184 PYEEQLKIKEEECCKVLKQLTKEIGVNNKPLAPWLFEQKQKYNRLCCPLERVIPSPIQTE 243

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTK---------ERMRIDYFMPGSLLINALMIEMMAT 93
           YR ++EF I +  +     +  + +K         E        P +  +     E + +
Sbjct: 244 YRNKSEFLIGYGVNQEDKTVGCRLSKYKGGTCAVVEPFDTINIPPVTKNVVRAFQEYIRS 303

Query: 94  ----IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA----- 144
               +           Q+   TS+  Q +  + ++       +E    L+ +L       
Sbjct: 304 TPYDVYSPETYAGHWKQLTVRTSRKGQVMAIVYFNPQKLP--KEDLSELKTSLSMYFTEG 361

Query: 145 ---RKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
                    L       +       + ++    D+ +      L +R   ++F Q N   
Sbjct: 362 SGKESGVTSLYFVEEGQRKSPHLEDLPVEHIAGDQYIYEDLLGLTFRISPHAFFQVNTPA 421

Query: 195 NVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
              +   +           +L++ CG G   + LA+   +V+ +E+ + ++  A+ N   
Sbjct: 422 AEVLYSAIADWAQLDQNTTVLDVCCGTGTIGISLAKKVKKVVGIELCQEAIADAKANAQL 481

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N+++NV+     +++    +     F                 VDPPR+GL    +  ++
Sbjct: 482 NNLDNVEFRCGKAEDIFPTLIYSFTFP-----------SPLAIVDPPRAGLHSKVIIAIR 530

Query: 314 AY---PHILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVL 361
                  ++Y+SCNP +   +   L                +    D FP T H E  +L
Sbjct: 531 KAEHLKQLIYVSCNPKAAMNNFIDLCRAPSNRVKGRPFRPIKALAVDLFPQTPHFELVIL 590

Query: 362 LVR 364
             R
Sbjct: 591 FER 593


>gi|153824701|ref|ZP_01977368.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MZO-2]
 gi|149741657|gb|EDM55686.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Vibrio cholerae MZO-2]
          Length = 344

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 140/363 (38%), Gaps = 37/363 (10%)

Query: 21  LRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK--ERMRIDYFM 77
           +R+++     V  L    S    +R +A+  +          + D Q +    +    + 
Sbjct: 1   MRELIAPATDVQWLPPVTSADTAFRNKAKMVVLGAAHAPILGIEDAQGQPLSLVTCPLYP 60

Query: 78  PGSLLINALMIEMMATIRLEPLLRAKL-----FQIDYLTSQSDQAIVTLI--YHRLLDDA 130
                + A +   +    + P  + K      F +   +  S Q ++  +   H +L+  
Sbjct: 61  QPMQELLAYLENWIRIAGIPPYNKLKKKGELKFILLTRSENSGQFMLRFVARSHAVLERI 120

Query: 131 WRECAIRLRDA--LHARKYQIQLIGRAN---KTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            R     +     +      IQ +  A    + +I L      + L      +       
Sbjct: 121 ERNLPTLIAAFPMIEVISVNIQPVHMARLEGEEEIFLTE---TQSLLEHFNDVPMVIRPK 177

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           SF Q N  +   +        + I    + +L+CG G F+L  A     V  +EI   ++
Sbjct: 178 SFFQTNPKVAEQLYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAI 237

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +A+ +     ++N+    + S +F+Q+     E                + V+PPR GL
Sbjct: 238 ASAQRSAQMMGIDNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRGL 282

Query: 305 DDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
                  ++  A  HILY SCNP ++ +D++ L++ + + R+  FD FP+T H E   LL
Sbjct: 283 GSELTAQLEALAPKHILYSSCNPQTMAKDIAELAS-YQMIRVQWFDMFPHTNHAEVLTLL 341

Query: 363 VRK 365
           VRK
Sbjct: 342 VRK 344


>gi|156549461|ref|XP_001603783.1| PREDICTED: similar to ENSANGP00000011586 [Nasonia vitripennis]
          Length = 615

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 143/427 (33%), Gaps = 82/427 (19%)

Query: 5   LLIDQYEQQLAEKV-------DRLRQMMLAFQVP-------------------NLQIFRS 38
           L    Y++QL  K        +RL Q M                            +   
Sbjct: 193 LFSMPYKEQLEFKQKEMRDVINRLGQEMSKVNKDLEKWYNSQKQKHNGLPCELGEIVHTD 252

Query: 39  EPIHYRMRAEFHIWHD--GDDLYHIM----FDQQTKERMRIDYF------MPGSLLINAL 86
               YR + EF I  D  G           +   +     ID        M  ++ I   
Sbjct: 253 VTEGYRNKCEFTIGLDVTGSKKMIGFRLSSYAAGSIAVGPIDDLCHIPQQMKTAIKILEK 312

Query: 87  MIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAIVTLIYH---------RLLDDAWRECAI 136
            +        +P+  +    Q+   T++ +  ++ +  +         + L +  +E   
Sbjct: 313 FVCDSDLDTFDPVTHSGYWKQVTARTTRKNHLMLVVAINPQNMSDEDRKSLKNELKEFFE 372

Query: 137 RLRDA------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           + ++A          + +          +      Y++E L      + +R    +F Q 
Sbjct: 373 QHKEANVTSLFFQTIEKKGAGGEGGGVIEHISGTHYIEETLL----GMTFRISPEAFFQI 428

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N      +    +   K +    LL++ CG G   L  A+H D VL +E+   ++E A+ 
Sbjct: 429 NTLGAEALYNTAIELAKPLTDTALLDVCCGTGTIGLSFAKHCDEVLGIEMTPSAIENAKV 488

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N V N +     +++             L  I+  +       VDPPR+GL    +
Sbjct: 489 NAKENDVKNCEFFVGKAEDIL-----------LPVINRTTKPNIVAIVDPPRAGLHQKAL 537

Query: 310 ---GMVQAYPHILYISCNPDSLCRDLSILSTT----H-----TIERLALFDQFPYTRHME 357
                 +    ++YISC+P +  R+L  L+      +        +    D FP+T+H E
Sbjct: 538 VSLRKAKKLKKLVYISCDPKAAIRNLVDLARPNSKQYFGEPLVPVKAVPVDMFPHTKHCE 597

Query: 358 CGVLLVR 364
             + L R
Sbjct: 598 LVLYLER 604


>gi|121713680|ref|XP_001274451.1| tRNA(m5U54)methyltransferase [Aspergillus clavatus NRRL 1]
 gi|119402604|gb|EAW13025.1| tRNA(m5U54)methyltransferase [Aspergillus clavatus NRRL 1]
          Length = 579

 Score =  185 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 148/402 (36%), Gaps = 50/402 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS------EPIHYRMRAEFHIWHDG 55
              L +  YE QLA K   + +    F     ++  +       P+ Y  R +    H  
Sbjct: 189 GCQLQMMSYEDQLAHKKRIVEKAYANFSGLIPELIPAVDDTFASPLQYGYRTKLT-PHFA 247

Query: 56  DDLYHIMFDQQT-KERMRIDYFMPGSLLINA-LMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
                    ++T  E   I+    G  L N  L +++        ++R  L       ++
Sbjct: 248 AVGGAGRGKKKTIPEGTPIEVPPIGFTLKNRRLDLDIEDCPLGTDIVRRGLKTERKRVAE 307

Query: 114 SDQAIVTLIYHRLLDDAWRECAI---RLRDALHARKYQIQLIGRANKTKICLDRD-YVDE 169
           +    +T     L+ ++ +          DA   +K         +   I ++ D Y++E
Sbjct: 308 NIHKYITKGATLLMRESTKRIPKDGSAETDAGIVQKEGEDESPAESGDVIRIEHDKYIEE 367

Query: 170 RLTV---------AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-------- 212
           +  V              I+     +F Q N  I     +++         +        
Sbjct: 368 KRCVTDNNATSVEYIDDYIFTNKAGAFFQNNNSILSGFTDYIRQLALPKDNEKDAKPIKY 427

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL+ Y G+G F++ L+  F   L V++A  S+ +AR N  AN + N       +    + 
Sbjct: 428 LLDAYSGSGLFTITLSPLFKSSLGVDVAGDSIISARENARANALPNTGFAAADAAVLFKD 487

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCR 330
           +    E                + +DPPR G  D  +  + +Y    ++Y+SCN  +  R
Sbjct: 488 VPYPPE-------------QTLLVIDPPRKGCSDDFLRQLLSYGPRRVVYVSCNVHTQAR 534

Query: 331 DLSILSTT-----HTIERLALFDQFPYTRHMECGVLLVRKPS 367
           D++++        + IE +  FD FP T H+E   +L + P+
Sbjct: 535 DVAVMVQGDANCRYEIESIRGFDFFPQTGHVEGVAILNKVPA 576


>gi|157868729|ref|XP_001682917.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126373|emb|CAJ04501.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 602

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 21/213 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           Y    LT     L +     +F Q N      ML  V    +   G  LL+L  G G   
Sbjct: 358 YGAPTLTEYLAELCFELSPTAFFQVNTPGMEKMLTKVAEVAELSTGTTLLDLCSGTGTIG 417

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L L++H  RV+ +E+ + +V  AR N   N + N +      +    ++          D
Sbjct: 418 LTLSKHVKRVIGIELVESAVANARRNAQQNGITNAEFHCGRVEHLLPSVISSLPAEDRGD 477

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILST---- 337
           I         + +DPPR+G++   +  ++       ++YISC   +L RD   L+     
Sbjct: 478 I--------VVILDPPRAGVNSTVLKWIRGMETIRRVVYISCEQKALERDCPGLTKPSTK 529

Query: 338 -----THTIERLALFDQFPYTRHMECGVLLVRK 365
                   +      D FP+T H+E   +L R+
Sbjct: 530 SYRGTPFEVTAAFAVDLFPHTHHVEMVAVLTRR 562


>gi|321471308|gb|EFX82281.1| hypothetical protein DAPPUDRAFT_302582 [Daphnia pulex]
          Length = 463

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 156/414 (37%), Gaps = 75/414 (18%)

Query: 9   QYEQQLAEKVDR-------LRQMMLAFQVPN------LQIFRSE-PIHYRMRAEFHIWHD 54
            Y +QL  K  R       L Q +              +   S   +HYR + +FHI +D
Sbjct: 67  PYAEQLEIKDKRNFEIMTKLTQRLKPHSPSKGIICQLKETLPSPVTLHYRNKNDFHIRYD 126

Query: 55  GDDLYH--IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK--------- 103
                   +   + +++ +R    +    L N           ++  ++ +         
Sbjct: 127 SSGRVVVGLCVGKASRQTLR---CIKADNLFNTHPTHTDVARVVQEYIQHESKWKVCEHF 183

Query: 104 -----LFQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIRLRDALHARKYQIQLI---- 152
                   +   ++   + +V +  H   L ++  R    R++D L A     Q++    
Sbjct: 184 QRGGNWRSVLVRSNHKFELMVIVTIHPQDLEEEEIRSEMERMKDYLLASSMGKQIVSVYY 243

Query: 153 GRANKTK---------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV- 202
             +  T+         +     ++ ER+        +R    SF Q N      + + V 
Sbjct: 244 QASGHTRATAEQCPFNLLHGHSHIYERIG----DYEFRISPESFFQINTEAARLLYDTVA 299

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L         +++L CG G   L++ARH   V+ VE+++ +VE AR+N A N + N + +
Sbjct: 300 LQLAPQRMSTVVDLCCGTGTQGLMVARHSRGVIGVELSRSAVEDARFNAAHNQIQNAEFI 359

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---L 319
              +++  + +  + E +   DI         + V+P R G+D   + +++    +   +
Sbjct: 360 AGRAEKLFKHIMEQLEVS--PDI--------AVIVNPSRGGVDKRIISLLRNNERVRNLV 409

Query: 320 YISC--------NPDSLC-RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           YISC        N   LC R    LS    +++    D FP+T H E  +   R
Sbjct: 410 YISCQADGPAMNNFVDLCIRGRKTLSEPFVLKKATPIDLFPHTNHCELVLSFRR 463


>gi|319775106|ref|YP_004137594.1| 23S rRNA (uracil-5-)-methyltransferase rumB, fragment (pseudogene)
           [Haemophilus influenzae F3047]
 gi|329122980|ref|ZP_08251551.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus aegyptius
           ATCC 11116]
 gi|317449697|emb|CBY85904.1| 23S rRNA (uracil-5-)-methyltransferase rumB, fragment (pseudogene)
           [Haemophilus influenzae F3047]
 gi|327471911|gb|EGF17351.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus aegyptius
           ATCC 11116]
          Length = 392

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 133/396 (33%), Gaps = 50/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQL EK   L+Q +++      Q    F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLTEKQYHLKQQLISINYDEAQWVAPFQSNEQGFRNKAKMVVSGSVERP 73

Query: 59  YHIMFDQQTKERMRIDYFM-------------PGSLLINALMIEMMATIRLEPLLRAKLF 105
              +       +  ID                     I    +      + +  L+  L 
Sbjct: 74  ILGILKNPNDPQSAIDLCDCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKYILL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKI 160
                T +     V    ++ L    RE    L+   H     I L  +       + +I
Sbjct: 134 TESIATEKLMLRFVLRTENK-LPLIRRELPKLLKKLPHLEVISINLQPQHAAILEGEQEI 192

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219
            L      + L      +        F Q N  +   +              +L +L+CG
Sbjct: 193 FLTE---QQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCG 249

Query: 220 NGNFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            G F L  A+              +EI+  ++ AA  +     + +V    + +    + 
Sbjct: 250 VGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASNSAKILGLEHVNFQSLDAASVIE- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
                        + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +
Sbjct: 309 -------------NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGK 355

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           DL  L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 356 DLQHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 390


>gi|303232532|ref|ZP_07319218.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium
           vaginae PB189-T1-4]
 gi|302481319|gb|EFL44393.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Atopobium
           vaginae PB189-T1-4]
          Length = 539

 Score =  185 bits (471), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 78/462 (16%), Positives = 138/462 (29%), Gaps = 103/462 (22%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRS-----EPIHYRMRAEFHI 51
               L   Y +QL EK   + ++   +        N  I        +P  +R +     
Sbjct: 80  GCPWLDMPYAEQLREKNRSMHELFNPWIKQHSCTLNPIIGMEYKDGVQPCGFRYKVATPF 139

Query: 52  WHDGDDLYH----------------------------------IMFDQQTKERMRIDYFM 77
                  +                                     +   T   +   +  
Sbjct: 140 AEARTGKHAQKTRDVRDAGTMRNARTTHARRDSRTHHIQPLACGFYAPGTHAIIPCTHCP 199

Query: 78  ----PGSLLIN-------ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
                   ++N        L I           LR  + +I    ++S   +VT   +  
Sbjct: 200 SEAPQARDILNFIAYKAAELGISAYNEDTCTGELRHAILRISKHYNESMLVLVTRTRN-- 257

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQ 182
                +     +  A       +Q +  A  T   L       +   ++        +  
Sbjct: 258 -FPQKKMLVRAILSAYPQLTTIVQNVN-ARNTNAMLGTYTTTLFGPGKIRDKLLGCTFEI 315

Query: 183 IENSFTQPNAGINVHMLEWVLA---------ATKGIQGD------------------LLE 215
              SF Q N      + +  +          A    + D                  +++
Sbjct: 316 GPCSFFQTNPQQTEILYQVAIDGVRTLCQKSALPARKSDNLKPNTAAKNQHTQGMLRVMD 375

Query: 216 LYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQA 272
            YCG G   + LA   +   V+ ++  + S+E AR N   NH+ +  +  +  +  F Q 
Sbjct: 376 AYCGCGTIDICLASQIEDAVVVGIDQVEDSIERARRNRKLNHLRSRAVYSLDDATHFMQN 435

Query: 273 M-RREREFNRLKDIDIHSY------RFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISC 323
                   + L   D  +       RF  I +DPPR+G     + G     P  I+YISC
Sbjct: 436 FVYASSVTSELSHEDEAAMSNGGRPRFDAIIMDPPRAGSTPEFILGACALNPTCIVYISC 495

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           NP +  RDL    +  +    +   D FP+T H+E  VL+ R
Sbjct: 496 NPVTQERDLHEFYAHGYVPRSITPVDMFPHTPHVESVVLMSR 537


>gi|303253313|ref|ZP_07339462.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248135|ref|ZP_07530163.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307261594|ref|ZP_07543262.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302647995|gb|EFL78202.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855312|gb|EFM87487.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306868717|gb|EFN00526.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 391

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 141/395 (35%), Gaps = 48/395 (12%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGD 56
           +S   L   Y  QL +K   L++++  F + N    L   +S    +R +A+  +    +
Sbjct: 14  VSCQWLEKPYATQLTDKEIDLKRLISPFILQNFTEILPPVQSSQKQFRNKAKMVVSGSVE 73

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +   QT  +  ID        +     E +  I  + + RA L   +    + + 
Sbjct: 74  RPILGILKDQTDPQSGIDLC---DCPLYPTEFEALFPILKDFIARAGLVPYNIAKKKGEL 130

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRANKTKICLD----------- 163
             + L   R          +R      L  R+    L      + + L+           
Sbjct: 131 KYILLTQSRYNQSVMLRFVLRSEQKRPLVERELPNLLAKLPKDSVVSLNIQPQHAAILEG 190

Query: 164 --RDYVDE--RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
               ++ E   +      +        F Q N  +   +        K +      +L+C
Sbjct: 191 ETEIFLTEKTTIEENFNDIPLFIRPQGFFQTNPNVASRLYATAQNWIKDLPIQQFWDLFC 250

Query: 219 GNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           G G F L  A+          +  +EI+  ++ +A  + A   + NV    + S +F   
Sbjct: 251 GVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQFA-- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                       ++        + V+PPR G+       +     P+++Y SCN  ++ +
Sbjct: 309 ------------LNDKGKSPDLVIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQTMAK 356

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 357 DFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|311977789|ref|YP_003986909.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus]
 gi|82000203|sp|Q5UQK3|YR405_MIMIV RecName: Full=Putative RNA methyltransferase R405
 gi|55417024|gb|AAV50674.1| tRNA (Uracil-5-)-methyltransferase [Acanthamoeba polyphaga
           mimivirus]
 gi|308204808|gb|ADO18609.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus]
          Length = 389

 Score =  185 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 148/398 (37%), Gaps = 66/398 (16%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSE-PIHYRMRAEFHIWHDGDDLYH 60
           L+   Y  QL  K++ ++Q      +PNL   Q+  S    +YR +  F I         
Sbjct: 14  LVNLNYSDQLDFKLNLIKQ-----YIPNLLTNQVIASPLVDNYRNKLRFDIGLSN----- 63

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
                   + + I Y +P     +  +   ++   L P +   + +I+      +Q+  +
Sbjct: 64  -------HDLITIGYSLPKKKNTHRYVYSSISMKHLHPKMIQIVSKIELFLRTHEQSWYS 116

Query: 121 LIYHRLLDDAWR-------ECAIRLRDALHARKYQIQLIGRANKT--------------- 158
           + +   L  +         E  + +      +   +     ++                 
Sbjct: 117 IKHGETLLPSMTIRTSFHTEDVMIIFKFKGPQNETVINYFSSDIFYEIIESIEINIVIEF 176

Query: 159 ----KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI----- 209
               KI    +Y+ E+L       I++  + SF Q N      +   VL  T        
Sbjct: 177 SDCRKIVKGHNYIHEKL----DDYIFKITDESFFQVNTLATEVLYNKVLELTMKYIKPTG 232

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  L +L CG G   + L++ F +V  ++I + S+  A +N   N++ N++ +    +  
Sbjct: 233 QDILFDLCCGTGTIGIYLSKIFTKVFGIDIKQSSIIDANHNKLLNNIPNIEFICNPIENV 292

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPD 326
            + +  E    +  D    +       VDPPR+G+       +   P++   +Y+SCN  
Sbjct: 293 LEKLISEC-LEKNPDSTFFA------VVDPPRTGMHGGVQNTINNCPNLEYLIYVSCNVV 345

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  RD+ IL            D FP+T H E  V+L +
Sbjct: 346 TFKRDMEILGKQFEAIETICLDLFPHTPHCELIVVLKK 383


>gi|328861344|gb|EGG10447.1| hypothetical protein MELLADRAFT_33671 [Melampsora larici-populina
           98AG31]
          Length = 422

 Score =  185 bits (470), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 147/406 (36%), Gaps = 95/406 (23%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEPIHYRMRAEFHIWHD 54
           SG    +  YE+QL  K   + +    F       +P ++     P+ Y  R +     +
Sbjct: 65  SGCQYQMISYEKQLELKQIVVEKAFKHFSGLDPSLLPKIEPTLPSPLQYAYRTKLTPHFE 124

Query: 55  --------------------GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI 94
                                ++L     ++  K  + I+  M  + +IN          
Sbjct: 125 LPRNIKAPQRNGIGIGNGNGKNELRIGFAEKGRKRVLDIEDCMIATSVIN---------- 174

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
                        + LT + ++   T+   +      R   + LRD+L      +     
Sbjct: 175 -------------EKLTQERNRVRSTIHTFK------RGATLLLRDSLE-----LATTEP 210

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-- 212
                +   ++ V E++     ++ + Q   SF Q N+ I    L ++ +     +    
Sbjct: 211 DRHICVTNHKEIVREKVL----SVHFEQNAGSFFQNNSSILNPFLSYIKSLLDDHKPSRK 266

Query: 213 -------------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                        L++ YCG+G FS+ LA  F + + +E++  S+  A++N   N + NV
Sbjct: 267 KEEGQEGEGEERYLVDAYCGSGLFSIGLADQFTKSMGIEVSSESIYWAKHNAKLNKIENV 326

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPH 317
           + +   ++     +    +               T+ +DPPR G D+  +  +       
Sbjct: 327 EFMVGKAEAIFADLNFPAQM-------------TTVIIDPPRKGCDEVFLDQLLDFKPKR 373

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           ILY+SCN  +  RD+  L   + ++ +   D FP + H E  V L 
Sbjct: 374 ILYVSCNVHTQARDVGRLGKVYKVQSIRGADFFPQSHHCESIVSLS 419


>gi|313892294|ref|ZP_07825887.1| conserved domain protein [Dialister microaerophilus UPII 345-E]
 gi|313119432|gb|EFR42631.1| conserved domain protein [Dialister microaerophilus UPII 345-E]
          Length = 260

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 16/184 (8%)

Query: 191 NAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N      + E  L  A       +++ YCG G  SL LA+    V+ +EI K ++E A+ 
Sbjct: 2   NQEQAEKLYEKALDFANLSGNETVIDAYCGTGTISLYLAQKAKHVIGIEIIKDAIENAKE 61

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N + NV+       ++            L ++     + + + +DP R+G D+  +
Sbjct: 62  NAKRNKIKNVEFHAADVAKY------------LPELAKKGIKAEVVVLDPVRAGCDEKVI 109

Query: 310 GMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             +   +   I+Y+SCN  +  RD+  LS   + + ++   D FP T H+E   LL +  
Sbjct: 110 EAIGKISPKRIVYVSCNVATQARDIERLSKKGYKLIKIQPIDMFPKTTHVETVALLYKLN 169

Query: 367 SGWH 370
           +  H
Sbjct: 170 TEHH 173


>gi|254443794|ref|ZP_05057270.1| 23S rRNA (uracil-5-)-methyltransferase [Verrucomicrobiae bacterium
           DG1235]
 gi|198258102|gb|EDY82410.1| 23S rRNA (uracil-5-)-methyltransferase [Verrucomicrobiae bacterium
           DG1235]
          Length = 414

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 136/381 (35%), Gaps = 82/381 (21%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMM----LAFQVPNLQIFRSEPIHYRMRA--EFHIWHD 54
            G      +Y  QL  K  ++++++             I   +   YR +    F + + 
Sbjct: 97  GGCQYQHFEYSAQLEWKTRQVKELLWHMVRVEHPVQPAIASPKLYGYRSKLTPHFQVPY- 155

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
                                                         + K   I +L + +
Sbjct: 156 ----------------------------------------------KDKPMTIGFLKAGT 169

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
               V + +  L+ DA  E    +R    A  ++ Q      K    L R+++D   T  
Sbjct: 170 RSRYVEVEHCPLISDAMNETLTDVR----ADTFRRQKEKPFKKGGTLLIREHLDGITTDP 225

Query: 175 G-------RTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLV 226
                     + +  +   F Q N  I      +V   A       L++ YCG+G F L 
Sbjct: 226 KAIIREQVGDITFSFLAGEFFQNNPSILPAFTGYVRDKARDAGAKYLVDAYCGSGLFCLT 285

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
            A+ F+  + +E+++ SV+ A  N   N + N +     +      ++   E        
Sbjct: 286 AAKDFEEAIGIEVSEQSVQYAVQNAKDNQIENARFAVGDAAAIFSQIKFPGE-------- 337

Query: 287 IHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHTIER 343
                   + +DPPR G  +  +  ++   P  ++Y+SCNP +  RDL  +L   + I+ 
Sbjct: 338 -----DSAVVIDPPRKGSSEDFLNQLIAFGPRSVIYVSCNPATQMRDLQVLLGGGYAIDE 392

Query: 344 LALFDQFPYTRHMECGVLLVR 364
           +  FD FP TRH+EC V+L +
Sbjct: 393 IQPFDLFPQTRHLECVVVLKK 413


>gi|147797617|emb|CAN65004.1| hypothetical protein VITISV_023490 [Vitis vinifera]
          Length = 1255

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 129/397 (32%), Gaps = 76/397 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSE------PIHYRMRAEFH 50
                   YE Q+  K  +++++++         P                HYR + EF 
Sbjct: 135 GCKTQNLSYEAQVRAKEQQVQELVIHVGKFSDKDPEFSSIMKPIVPCDIQFHYRNKMEFS 194

Query: 51  IWHDGDDLYHIMFDQQT---------------KERMRIDYFMPGSLLINALMIEMMATIR 95
                     ++ +++                 + + ++  +  S   N ++  +    R
Sbjct: 195 FATQKWLPRELLHEKEDGASGYALGLHAPGFFDKVLNVNKCLLQSEPANMVLAAIQECWR 254

Query: 96  L-------------EPLLRAKLFQI--DYLTSQSDQAI--VTLIYHRLLDDAWRECAIRL 138
                         +  L+  + +   D  T   +  +  VT  Y   L     E    +
Sbjct: 255 DPQFGLSPYNVHSHDGFLKHLVLRTGRDIKTGLPELMVNFVTSSYKPELLKPLVEKISAI 314

Query: 139 RD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG-- 193
            +    ++     +       +  I   +  + E L    R L ++   NSF Q N    
Sbjct: 315 PEVVSIVNNINTSVGSTSVGEQEYILHGKSAITEIL----RGLTFQISANSFFQTNTHQQ 370

Query: 194 ------INVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
                 +   +L  ++    G++GD    +L+L+CG G   L L+R    V   E+   +
Sbjct: 371 ILRLYNVQAEVLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLSRRVRHVYGYEVVAQA 430

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  AR N   N + N   +     +  +   ++              +   +  DP R G
Sbjct: 431 VSDARRNAKLNGICNATFIEGDLNKIGENFGKDF------------PKPDVVISDPNRPG 478

Query: 304 LD--DATVGMVQAYPHILYISCNPDSLCRDLSILSTT 338
           +        +    P I+Y+SCNP +  RDL  L   
Sbjct: 479 MHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 515


>gi|71420165|ref|XP_811388.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70876047|gb|EAN89537.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 568

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/421 (19%), Positives = 143/421 (33%), Gaps = 79/421 (18%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPI-HYRMRAEFHIWHDGDDLYHIM 62
           E+QLA K     ++M A   P  +       +  S  +  YR   +    +       I 
Sbjct: 151 EEQLARKKVHCLRVMEAIAPPGDKYAELFAGVHVSPELTGYRNHVQLSFGYSETGEPSIG 210

Query: 63  FDQQTKERMRIDYFMPGSLL------INALMIEMMATIRLEPLL-----RAKLFQIDYLT 111
           F    K  M        S L      +N L  ++   +     L     +  L   D + 
Sbjct: 211 F---LKGAMIEGTCAIHSALGKDIVTMNPLAKQVAEAVMSVCHLFLLPEKGGLMVFDKV- 266

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDA----LHARKYQIQLIGRAN----KTKICLD 163
            Q        + H +L +   +  + +  A    ++  K  +     +     K ++   
Sbjct: 267 KQQGFWRKLQVRHNVLGEVMVDMELDIDSAEASVVNEVKMHLTNTLFSEGLRAKLRMISG 326

Query: 164 RD---------------------------YVDERLTVAGRTLIYRQIENSFTQPNA-GIN 195
           ++                           +    LT     L +     SF Q N  G+ 
Sbjct: 327 KETASVVSAQYHHGTGISSSSADEPRHILFGTPTLTEHLLGLRFELSPTSFFQVNTSGME 386

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           + + E    A  G +  LL+L CG G   L LA+H  RV+ +E+ + +V  AR N   N 
Sbjct: 387 LLLCETAKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESAVNDARQNAKRND 446

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + NV       +     +      N L + D          +DPPR+G+    +  ++  
Sbjct: 447 IANVTFCSGRVEHLLPDI-----INSLPEEDKTDI---VAILDPPRAGVTPTVLKWIRGT 498

Query: 316 P---HILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLV 363
           P    ++YISC   +L RD   L+             +      D FP+T H+E   +L 
Sbjct: 499 PTIRRVVYISCEQKALERDCPSLTKSTTKAYRGLPFELVASFAVDLFPHTPHVEMVAVLA 558

Query: 364 R 364
           R
Sbjct: 559 R 559


>gi|145637263|ref|ZP_01792924.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittHH]
 gi|145269515|gb|EDK09457.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittHH]
          Length = 391

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 136/394 (34%), Gaps = 47/394 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQL EK   L+Q +++        L  F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLTEKQYHLKQQLISINYDEAQWLAPFQSNEQGFRNKAKMVVSGSVERP 73

Query: 59  YHIMFDQQTKE----RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK-------LFQI 107
              +      +          +      I +++ + +    L P   AK       +   
Sbjct: 74  ILGILKNNDPQSAIDLCDCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKYILLT 133

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKICL 162
           + + ++       L     L    RE    L    H     I L  +       + +I L
Sbjct: 134 ESIATEKLILRFVLRTENKLPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEIFL 193

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +        F Q N  +   +              +L +L+CG G
Sbjct: 194 TE---QQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCGVG 250

Query: 222 NFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
            F L  A+              +EI+  ++ AA  +     + +V    +++    +   
Sbjct: 251 GFGLHCAKALQEKWGKPIKLTGIEISSSAILAASNSAKILGLEHVNFQSLNAASVIE--- 307

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDL 332
                      + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +DL
Sbjct: 308 -----------NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDL 356

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 357 QHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 389


>gi|145630054|ref|ZP_01785836.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R3021]
 gi|144984335|gb|EDJ91758.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R3021]
          Length = 391

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 136/395 (34%), Gaps = 49/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF---QVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQL EK   L+Q +++        +  F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLTEKQYHLKQQLISINYDGAQWVAPFQSNEQGFRNKAKMVVSGSVERP 73

Query: 59  YHIMFDQQTKE----RMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQ 106
              +      +          +      I +++ + +    L P         L+  L  
Sbjct: 74  ILGILKNNDPQSAIDLCDCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKYILLT 133

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKIC 161
               T +     V    ++ L    RE    L+   H     I L  +       + +I 
Sbjct: 134 ESIATEKLMLRFVLRTENK-LPLIRRELPKLLKKLPHLEVISINLQPQHAAILEGEQEIF 192

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGN 220
           L      + L      +        F Q N  +   +              +L +L+CG 
Sbjct: 193 LTE---QQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCGV 249

Query: 221 GNFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           G F L  A+              +EI+  ++ AA  +     + +V    + +    +  
Sbjct: 250 GGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASNSAKILDLEHVNFQSLDAASVIE-- 307

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRD 331
                       + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +D
Sbjct: 308 ------------NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKD 355

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           L  L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 356 LQHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 389


>gi|76799505|ref|ZP_00781641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae 18RS21]
 gi|76585140|gb|EAO61762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           agalactiae 18RS21]
          Length = 380

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 111/297 (37%), Gaps = 28/297 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++  QY++QL  K D +RQ ++ F+    +       I  SEP HYR + +F +   
Sbjct: 81  GCQIMHLQYDKQLEFKTDVIRQALMKFKPEGYENYEIRKTIGMSEPEHYRAKLQFQVRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI---EMMATIRLEPLLRAKLFQIDYLT 111
           G ++   ++ Q T   + I   +    L   ++    E++   +L      K+  +  + 
Sbjct: 141 GGNVKAGLYAQGTHRLIDIKDCLVQDSLTQEMINRVAELLGKYKLPIYNERKIAGVRTVM 200

Query: 112 SQ----SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKI 160
            +    S +  +  I  + LD  + +  I L       K     I  +         T++
Sbjct: 201 IRRAQASGEVQLIFITSKRLD--FDDVVIELVREFPELKTVAVNINASKTSDIYGQITEV 258

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219
              ++ ++E +   G +L       +F Q N      +  E V A       DL++ YCG
Sbjct: 259 IWGQESINEEVLDYGFSL----SPRAFYQLNPKQTQILYSEAVKALDVKEDDDLIDAYCG 314

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
            G   L  A     V  ++I   +++ A+ N       N       +++       E
Sbjct: 315 VGTIGLAFAGKVKSVRGMDIIPEAIQDAKENALYMGFTNTHYEAGKAEDIIPRWYSE 371


>gi|66518990|ref|XP_396538.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like [Apis
           mellifera]
          Length = 568

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 156/430 (36%), Gaps = 85/430 (19%)

Query: 5   LLIDQYEQQLAEKVDRL--------RQMML---------------AFQVPNLQIFR---- 37
           L    Y  QL  K   +        +QM+                 +Q    ++      
Sbjct: 143 LWNMPYPSQLELKQKEMSSILTTICKQMLKESKGDLLDWLNCQKNKYQGLPCELLPILSI 202

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIM------FDQQTKERMRID---YFMPGSLLINALMI 88
                YR + EF +     +   ++      +   +     ID   +      ++  ++ 
Sbjct: 203 DTIKEYRNKCEFTVGKSDKEDKIVIGFRLSTYASGSTAVGPIDNLCHIPNKMKIVVKVLE 262

Query: 89  EMMATIRLEPL----LRAKLFQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIRLRDA- 141
           E M +  L P           Q+   T+ SD  +V +  H   L  +   E  ++L+   
Sbjct: 263 EFMKSTELTPFDPVDYSGYWRQVTVRTTLSDHLMVIVGIHPQDLTSEKLDELKLQLKTFF 322

Query: 142 ------------LHARKYQIQLIGRANKTK--ICLDRDYVDERLTVAGRTLIYRQIENSF 187
                       L+ +  +I+ I   ++          Y++E+L      + +R    +F
Sbjct: 323 EIGKGVQARVTSLYLQIMKIKSIDGKDEENFHHISGTKYIEEKLL----DMKFRISPQAF 378

Query: 188 TQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q N      + +  +  A   +   LL++ CG G   L  +++   V  +E+ + +++ 
Sbjct: 379 FQVNTLGAQVLYKAAIDLAKPNVDTALLDICCGTGTIGLAFSKYCGEVFGLEMIEDAIKD 438

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ N+ AN ++N +     +++            R    DI +       VDPPR+GL  
Sbjct: 439 AKENVIANKISNCEFFVGKAEDILS-----PVIRRTTKPDIIA------IVDPPRAGLHQ 487

Query: 307 ATVGMVQAYP---HILYISCNPDSLCRDLSILSTT----HTIE-----RLALFDQFPYTR 354
             +  ++       ++YISC+P +  R+L  L+      +  E     +    D FPYT+
Sbjct: 488 RALLTIRKAKKLSRLIYISCDPRAAMRNLIDLARPISKQYVGEPMVPVKAVAVDMFPYTK 547

Query: 355 HMECGVLLVR 364
           H E  + L R
Sbjct: 548 HCELVLCLER 557


>gi|148828135|ref|YP_001292888.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           PittGG]
 gi|167012642|sp|A5UI99|RUMB_HAEIG RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|148719377|gb|ABR00505.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittGG]
          Length = 392

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 133/396 (33%), Gaps = 50/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQL EK   L+Q +++        L  F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLTEKQYHLKQQLISINCDEAQWLAPFQSNEQGFRNKAKMVVSGSVERP 73

Query: 59  YHIMFDQQTKERMRIDYFM-------------PGSLLINALMIEMMATIRLEPLLRAKLF 105
              +       +  ID                     I    +      + +  L+  L 
Sbjct: 74  ILGILKNPNDPQNAIDLCDCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKYILL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKI 160
                T +     V    ++ L    RE    L    H     I L  +       + +I
Sbjct: 134 TESIATEKLMLRFVLRTENK-LPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEI 192

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219
            L      + L      +        F Q N  +   +              +L +L+CG
Sbjct: 193 FLTE---QQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYASAQQWVAEFPIYNLWDLFCG 249

Query: 220 NGNFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            G F L  A+              +EI+  ++ AA ++     + +V    + +    + 
Sbjct: 250 VGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLDAASVIE- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
                        + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +
Sbjct: 309 -------------NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGK 355

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           DL  L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 356 DLQHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 390


>gi|165976538|ref|YP_001652131.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876639|gb|ABY69687.1| SAM-dependent methyltransferase related to
           tRNA(uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 391

 Score =  184 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 143/395 (36%), Gaps = 48/395 (12%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGD 56
           +S   L   Y  QL +K   L++++  F + N    L   +S    +R +A+  +    +
Sbjct: 14  VSCQWLEKPYATQLTDKEIDLKRLISPFILQNFTEILPPVQSSQKQFRNKAKMVVSGSVE 73

Query: 57  DLYHIMFDQQTKERMRIDYF-----MPGSLLINALMIEMMATIRLEPLL----RAKLFQI 107
                +   Q   +  ID             I  ++ + +A   L P      + +L  I
Sbjct: 74  RPILGILKDQIDPQSGIDLCDCPLYPTEFEAIFPILKDFIARAGLVPYNIAKKKGELKYI 133

Query: 108 DYLTSQSDQAIVTLI-----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTK 159
               S+ +Q+++          R L +      +            IQ    A    +T+
Sbjct: 134 LLTQSRYNQSVMLRFVLRSEQKRPLVERELPNLLAKLPKDSVVSLNIQPQHAAILEGETE 193

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
           I L      E        +        F Q N  +   +        K +      +L+C
Sbjct: 194 IFLTEKTTIEE---NFNDIPLFIRPQGFFQTNPNVASRLYATAQNWIKDLPIQQFWDLFC 250

Query: 219 GNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           G G F L  A+          +  +EI+  ++ +A  + A   + NV    + S +F   
Sbjct: 251 GVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQFA-- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                       ++        + V+PPR G+       +     P+++Y SCN  ++ +
Sbjct: 309 ------------LNDKGKSPDLVIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQTMAK 356

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 357 DFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|302838263|ref|XP_002950690.1| hypothetical protein VOLCADRAFT_33590 [Volvox carteri f.
           nagariensis]
 gi|300264239|gb|EFJ48436.1| hypothetical protein VOLCADRAFT_33590 [Volvox carteri f.
           nagariensis]
          Length = 211

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 30/221 (13%)

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGDLLELYC 218
              Y+ + L      L +R    +F Q N      +     +W  A   G    LL++ C
Sbjct: 2   GPGYIHDSLC----ELRFRISPTAFFQVNTPATCALYKVVGDWAAA---GPSTLLLDICC 54

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   + LA    +V+ V+    ++E AR N A N + N + V   +++    +     
Sbjct: 55  GTGTIGITLAGRVSKVIGVDSVASAIEDARVNAALNGITNAEFVAGKAEDALPGILAAHA 114

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSIL 335
                    +         DPPR+GL    +  +     I   +++SCNPDSL +++  L
Sbjct: 115 GEGSP----YGPGDVVAVADPPRAGLHRTVLRALLGCERIRRLVFVSCNPDSLVQNVVAL 170

Query: 336 S------------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                        T     +    D FP+T H+E  +LL R
Sbjct: 171 CCPPGRAGPGCSYTPFRPVKALAVDLFPHTSHVEAVMLLER 211


>gi|307257165|ref|ZP_07538937.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864327|gb|EFM96238.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 391

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 141/395 (35%), Gaps = 48/395 (12%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGD 56
           +S   L   Y  QL +K   L++++  F + N    L   +S    +R +A+  +    +
Sbjct: 14  VSCQWLEKPYATQLTDKEIDLKRLISPFILQNFTEILPPVQSSQKQFRNKAKMVVSGSVE 73

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +   QT  +  ID        +     E +  I  + + RA L   +    + + 
Sbjct: 74  RPILGILKDQTDPQSGIDLC---DCPLYPTEFEALFPILKDFIARAGLVPYNIAKKKGEL 130

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRANKTKICLD----------- 163
             + L   R          +R      L  R+    L      + + L+           
Sbjct: 131 KYILLTQSRYNQSVMLRFVLRSEQKRPLVERELPNLLAKLPKDSVVSLNIQPQHAAILEG 190

Query: 164 --RDYVDE--RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
               ++ E   +      +        F Q N  +   +        K +      +L+C
Sbjct: 191 ETEIFLTEKTTIEENFNDIPLFIRPQGFFQTNPNVASRLYATAQNWIKDLLIQQFWDLFC 250

Query: 219 GNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           G G F L  A+          +  +EI+  ++ +A  + A   + NV    + S +F   
Sbjct: 251 GVGGFGLHCAKALQEKNENVQLTGIEISASAIASATQSAAQLQLKNVTFASLDSAQFA-- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                       ++        + V+PPR G+       +     P+++Y SCN  ++ +
Sbjct: 309 ------------LNDKGKSPDLVIVNPPRRGIGKPLAEFLNELGTPYLIYSSCNAQTMAK 356

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 357 DFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|153792070|ref|NP_001093345.1| TRM2 tRNA methyltransferase 2 homolog A [Xenopus laevis]
 gi|148745595|gb|AAI42551.1| LOC100101284 protein [Xenopus laevis]
          Length = 612

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 137/427 (32%), Gaps = 88/427 (20%)

Query: 9   QYEQQLAEKVDR----LRQMMLAFQV---------------------PNLQIFRSE-PIH 42
            YE+QL  K +     L+Q+     V                     P  ++  S     
Sbjct: 183 PYEEQLKIKEEECCKVLKQLTKEIGVNNKPLMPWLFEQKQKYNRLCCPLERVIPSPIQTE 242

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTK---------ERMRIDYFMPGSLLINALMIEMMAT 93
           YR ++EF I +  +     +  + +K         E        P +  +     E + +
Sbjct: 243 YRNKSEFLIGYGVNREDKTVGCRLSKYKGGTCAVVEPFDTINIPPVTKNVVKAFQEYIRS 302

Query: 94  ----IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA----- 144
               +           Q+   T++  Q +  + ++       +E    L+ +L       
Sbjct: 303 TPYDVYSPETYDGHWKQLTVRTTRKGQVMAIVYFNPQKLP--KEVLTELKASLSDYFTKG 360

Query: 145 ---RKYQIQLIGRANKTK-----------ICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                    L       +                 Y+ E L      L +R   ++F Q 
Sbjct: 361 SGKESGVTSLYFVEEGQRKSPLLEDLPVEHVAGDQYIYEDLL----GLSFRISPHAFFQV 416

Query: 191 NAGINVHMLEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N      +   +   A       +L++ CG G   + LA+   +V+ +E+ + ++  A+ 
Sbjct: 417 NTLAAEVLYSAIGDWAQLDQDTTVLDVCCGTGTIGISLAKKVKKVVGIELCQEAIADAKA 476

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N+++NV+     +++    +     F                 VDPPR+GL    +
Sbjct: 477 NAQLNNLDNVEFRCGKAEDIFPTLINSYTFP-----------SPLAIVDPPRAGLHSKVI 525

Query: 310 GMVQAY---PHILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHME 357
             ++       ++Y+SCNP +   +   L                +    D FP T H E
Sbjct: 526 IAIRKAEHLKQLIYVSCNPKAAMNNFVDLCRAPSNRVKGRPFRPIKALAVDLFPQTPHFE 585

Query: 358 CGVLLVR 364
             +L  R
Sbjct: 586 LVILFER 592


>gi|301169683|emb|CBW29284.1| 23S rRNA m(5)U747 methyltransferase [Haemophilus influenzae 10810]
          Length = 392

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 134/396 (33%), Gaps = 50/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQL EK   L+Q +++      Q    F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLTEKQYHLKQQLISINYDEAQWVAPFQSNEQGFRNKAKMVVSGSVERP 73

Query: 59  YHIMFDQQTKERMRIDYFM-------------PGSLLINALMIEMMATIRLEPLLRAKLF 105
              +       +  ID                     I    +      + +  L+  L 
Sbjct: 74  ILGILKNPNDPQSAIDLCDCPLYPTHFSVIFSILKDFIGRAGLVPYNIAKQKGELKYILL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKI 160
                T +     V    ++ L    RE    L    H     I L  +       + +I
Sbjct: 134 TESIATEKLMLRFVLRTENK-LPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEI 192

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219
            L      + L      +        F Q N  +   +              +L +L+CG
Sbjct: 193 FLTE---QQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCG 249

Query: 220 NGNFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            G F L  A+              +EI+  ++ AA ++     + +V    +++    + 
Sbjct: 250 VGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLNAASVIE- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
                        + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +
Sbjct: 309 -------------NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGK 355

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           DL  L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 356 DLQHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 390


>gi|126272598|ref|XP_001369338.1| PREDICTED: similar to CXorf34 protein [Monodelphis domestica]
          Length = 469

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 142/413 (34%), Gaps = 68/413 (16%)

Query: 9   QYEQQLAEKVDRLRQMM----------------LAFQVPNLQIFRSEPI--HYRMRAEFH 50
            YEQQL  K D LR ++                       LQ FR  P+   YR +  F 
Sbjct: 68  DYEQQLRVKTDALRGLLQWLEGRLRLLGSPDGEAGVLCSRLQPFRPSPVLHGYRNKCNFA 127

Query: 51  IWHDGDDL----YHIMFDQQTKERMRI-----DYFMPGSLLINALMIEMMATIRLEPLL- 100
           +    D       +++     ++ + +      +       +     + +    L+P L 
Sbjct: 128 VRQGPDGRPRTVGYVLGSGGEQQPVCVRPGHLKHIPDAHQRVARCYQDFLEQTPLDPYLD 187

Query: 101 ---RAKLFQIDYLTSQSDQAI---------VTLIYHRLLDDAWRECAIRLRDALHARKYQ 148
                   ++   ++     +         ++    +   +  RE   R   A+      
Sbjct: 188 SDASGHWHELTVRSTSQGHTMAIVTFQLQGLSPEELQEPQEELREFFTRGPGAICELASL 247

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                  ++ + C      +  L        +R    +F Q N+   V +L  V+    G
Sbjct: 248 YFQERSGDQQQPCYQLLAGNPYLFEDLPGFKFRISPGAFFQINSA-AVEVLYRVVGELIG 306

Query: 209 IQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +  +  LL+L  G G  SL LA H  +VL+  +   +VE A++  A N + N +      
Sbjct: 307 VDPNTLLLDLSQGTGATSLSLAPHTSQVLSTGLVGQAVEDAKWTTAFNGITNWEFHADHV 366

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISC 323
           +     + + +E  +             + VDP R+GL+   V  ++    I   LY+SC
Sbjct: 367 ENVVPQLLKSQEAGQSP----------VVMVDPSRTGLNFQVVRAIRNCTAIRTLLYVSC 416

Query: 324 NPDSLC-RDL-----------SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            P+    R+             +L     + +    D FP+T H E  VL  R
Sbjct: 417 YPEGKAKRNFLELCCPPDPGKDLLGEPFVLRQAVPVDMFPHTPHYELVVLFTR 469


>gi|296191372|ref|XP_002743598.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A [Callithrix
           jacchus]
          Length = 621

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 134/424 (31%), Gaps = 83/424 (19%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 176 PYAEQLERKRLECEQVLQKLAKEIGSTNRALLPWLVEQRHRHNKACCPLEGVRPSPQQTE 235

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 236 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEYIRS 295

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
                           Q+   TS+  QA+    +H        E    L+ +L       
Sbjct: 296 TPYSAYDPETYTGHWKQLTVRTSRRRQAMAIAYFHPQ--KLNPEELAELKASLAQHFMSG 353

Query: 150 QLIGRA-----------NKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
                             KT     + L+    D  +      L +R   ++F Q    +
Sbjct: 354 PGRASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQV--TL 411

Query: 195 NVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
              +L  ++     +  D  +L++ CG G  +L+L +   RV+ VE+   +VE AR N  
Sbjct: 412 AAEVLYTIIQDWSQLDADSTVLDVCCGTGTIALLLFQKVKRVIGVELCPEAVEDARVNAQ 471

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N ++NV+     +++   A+        L              +DPPR+GL    +  +
Sbjct: 472 DNELSNVEFHCGRAEDLVPALVSRLASQHL-----------VAILDPPRAGLHSKVILAI 520

Query: 313 QAY---PHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGV 360
           +       +LY+SCNP +   +   L                +    D FP T H E  +
Sbjct: 521 RRAENLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGIPFQPVKAVAVDLFPQTPHCEMLI 580

Query: 361 LLVR 364
           L  R
Sbjct: 581 LFER 584


>gi|229819942|ref|YP_002881468.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Beutenbergia cavernae
           DSM 12333]
 gi|229565855|gb|ACQ79706.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Beutenbergia cavernae
           DSM 12333]
          Length = 376

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 137/385 (35%), Gaps = 44/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S TL+   Y  QLA K    R  +     V  L    S    +R +A+  +     D   
Sbjct: 13  SCTLIERPYADQLAGKQAHARAALTGHDGVAWLPPHPSAEEQFRNKAKMVVTGSAVDPVI 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTS 112
            +      E + + +      P +  ++ L  E +A   L P      R +L  +    S
Sbjct: 73  GILGPDG-EGVDLRWCGLHEPPVTAALSPLA-EFVARANLAPYDLRTRRGELKYLLVTAS 130

Query: 113 QSDQAIVTLIYH--------RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
              + +V  +          R    A +E   RL  A    + +   +     T+I L  
Sbjct: 131 PDGEVMVRFVLRSTEALARIRKHLPALQEALPRLAVASVNVQPEHSAVLEGP-TEIPLTP 189

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
               + L +A   L       SF Q N  +   +          +    +++LYCG G F
Sbjct: 190 A---QTLRMAVNGLDLHLRPQSFFQTNTAVAAALYREATDWIDELAPSSVVDLYCGVGPF 246

Query: 224 SLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +L  A      RVL VE +  ++ +A ++ A   + N +     +               
Sbjct: 247 ALHAAARDTERRVLGVETSAEAIASATHSAADAGLANARFAVGDA--------------- 291

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       ++     H++Y SC+  SL RDL+++ +  
Sbjct: 292 TAFAADDDGVPDVVIVNPPRRGIGPDLAAWLERSGVRHVVYSSCSSASLARDLAVMPSL- 350

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
              R  + D FP T H E   LL R
Sbjct: 351 RPVRARVLDMFPQTAHYEVLTLLER 375


>gi|169842994|ref|XP_001828228.1| tRNA methyltransferase [Coprinopsis cinerea okayama7#130]
 gi|116510684|gb|EAU93579.1| tRNA methyltransferase [Coprinopsis cinerea okayama7#130]
          Length = 564

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 143/407 (35%), Gaps = 85/407 (20%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSE-PIHYRMRA--EF- 49
            G    +  YE QL  K + + +    +         P L    S     YR +    F 
Sbjct: 197 GGCQYQMLSYETQLDFKRNVVVKAFKNYSNLSDEEMPPILSTVPSPLKYEYRTKLTPHFE 256

Query: 50  -----------HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98
                       I    D L        T++ M I+     + ++NA M      +  + 
Sbjct: 257 APPKDIRKNMKPISEKPDWLKIGFNRVGTQKVMDIEECPIATPVVNAQMAATREEVVTKV 316

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
                          + +  V+L++   LD            +++     +  +  A   
Sbjct: 317 --------------HTYKKGVSLLFRESLD-----------TSVNIDDDSVDRLSDAFNK 351

Query: 159 KICLDRDY--VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----- 211
           +IC+      V ER+       I+     SF Q N  + + + ++V  A           
Sbjct: 352 QICVTDPKSLVRERVG----DWIFEYNAGSFFQNNNSVLLPLTDYVRNAIFPPDAPTPST 407

Query: 212 --DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSK 267
              L++ YCG G F +VL+  F +V  +E+++ S+  A  N   N +  + +     ++ 
Sbjct: 408 LTHLVDTYCGAGLFGIVLSPSFQKVAGIELSQDSIRFATRNAELNKISKDKISFRAGNAG 467

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325
           E                +         + +DPPR G D+  +  +       I+Y+SCN 
Sbjct: 468 EIFAV------------VQDFPADQTAVLIDPPRKGCDEFFIKQLLEFGPKTIVYVSCNV 515

Query: 326 DSLCRDLSIL--------STTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  RD+  +        +  +T++ +  FD FP T H+E   +L R
Sbjct: 516 HTQARDVGQIMEAGRTGKAKKYTLDSVRGFDLFPQTAHVESVAVLTR 562


>gi|145254861|ref|XP_001398782.1| tRNA(m5U54)methyltransferase [Aspergillus niger CBS 513.88]
 gi|134084367|emb|CAK48706.1| unnamed protein product [Aspergillus niger]
          Length = 533

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/400 (19%), Positives = 140/400 (35%), Gaps = 58/400 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-------FRSE-PIHYRMRAEFHIWH 53
              L +  YE QLA K   + +    F     ++       F S     YR +   H   
Sbjct: 148 GCQLQMMSYEDQLAHKKRIVEKAYANFSGLIPELIPAIDDTFPSPLQYGYRTKLTPHFAA 207

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
            G +       ++  + +       G    N  M   +        L   + +    + +
Sbjct: 208 PGGNKRRGKGPREPHKEVP----PIGFTFKNRRMDLDIEDCP----LGTDIVRQGLKSER 259

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ--IQLIGRANKTKICLDRD-YVDER 170
              A     Y +      RE   R+     +      I   G+ +   I +++D Y++E+
Sbjct: 260 KRVAETIGKYTKGATLLMRESTSRVPKEQDSENPPAPINKPGQDSGDVIRIEKDTYIEEK 319

Query: 171 LTV---------AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--------L 213
             V              ++     +F Q N  I     E++         D        L
Sbjct: 320 RCVTDSNATSIEYVDDYVFTNKAGAFFQNNNSILSGFTEFIRQHAMPPNNDQDAKPIKYL 379

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+ Y G+G F++ L+  F   L V++A  S+ +AR N   N + N       +    + +
Sbjct: 380 LDAYSGSGLFTITLSPLFKSSLGVDVAGDSIASARDNARDNKLPNTGFAAADAATLFKDV 439

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
               +                + +DPPR G  D  +  + A+    ++Y+SCN  +  RD
Sbjct: 440 PYPPD-------------QTLLVIDPPRKGCSDDFLRQLLAFGPRRVVYVSCNVHTQARD 486

Query: 332 LSILSTT-------HTIERLALFDQFPYTRHMECGVLLVR 364
           ++++          + IE +  FD FP T H+E   +L +
Sbjct: 487 VAVMVQGDTEKKIRYEIESIRGFDFFPQTGHVEGVAILNK 526


>gi|322828893|gb|EFZ32513.1| hypothetical protein TCSYLVIO_1138 [Trypanosoma cruzi]
          Length = 568

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 140/420 (33%), Gaps = 77/420 (18%)

Query: 11  EQQLAEKVD---RLRQMMLAFQVPNLQIF-----RSEPIHYRMRAEFHIWHDGDDLYHIM 62
           E+QLA K     R+ + +        ++F       E   YR   +    +       I 
Sbjct: 151 EEQLARKKAHCLRVTEAIAPPGDKYAELFAGVHVSPELTGYRNHVQLSFGYSETGESSIG 210

Query: 63  FDQQTKERMRIDYFMPGSLL------INALMIEMMATIRLEPLL-----RAKLFQIDYL- 110
           F    K  M        S L      +N L  ++   +     L     +  L   D + 
Sbjct: 211 F---LKGAMIEGTCAIHSALGKDIVTMNPLAKQVAEAVMSVCHLFLLPEKGGLMVFDKVK 267

Query: 111 ---------TSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL------HARKYQIQLIGRA 155
                       +    V +     +D A       ++  L         + ++ +I   
Sbjct: 268 QQGFWRKLQVRHNVLGEVMVDMELDIDSAEASVVSEVKTHLINTLFSEGLRAKLSMISGK 327

Query: 156 NKTKICLDRDY---------VDE---------RLTVAGRTLIYRQIENSFTQPNA-GINV 196
               +   + +         VDE          LT     L +     SF Q N  G+ +
Sbjct: 328 ETASVVSAQYHHGTGISSSSVDEPRHILFGTPTLTEHLLGLRFELSPTSFFQVNTSGMEL 387

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            + E    A  G +  LL+L CG G   L LA+H  RV+ +E+ + +V  AR N   N +
Sbjct: 388 LLCETAKVAALGPKTTLLDLCCGTGVIGLTLAKHVKRVIGIELVESAVSDARQNAKRNDI 447

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            N        +     +      N L + D          +DPPR+G+    +  ++  P
Sbjct: 448 ANATFCSGRVEHLLPDI-----INSLPEEDKTDI---VAILDPPRAGVTPTVLKWIRGTP 499

Query: 317 ---HILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLVR 364
               ++YISC   +L RD   L+             +      D FP+T H+E   +L R
Sbjct: 500 TIRRVVYISCEQKALERDCPSLTKSTTKAYRGLPFELVASFAVDLFPHTPHVEMVAVLAR 559


>gi|309973539|gb|ADO96740.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R2846]
          Length = 391

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 135/395 (34%), Gaps = 49/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQL EK   L+Q +++      Q    F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLTEKQYHLKQQLISINYDEAQWVAPFQSNEQGFRNKAKMVVSGSVERP 73

Query: 59  YHIMFDQQTKE----RMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQ 106
              +      +          +      I +++ + +    L P         L+  L  
Sbjct: 74  ILGILKNNDPQSAIDLCDCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKYILLT 133

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKIC 161
               T +     V    ++ L    RE    L    H     I L  +       + +I 
Sbjct: 134 ESIATEKLMLRFVLRTENK-LPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEIF 192

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGN 220
           L      + L      +        F Q N  +   +              +L +L+CG 
Sbjct: 193 LTE---QQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCGV 249

Query: 221 GNFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           G F L  A+              +EI+  ++ AA  +     + +V    + +    +  
Sbjct: 250 GGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASNSAKILDLEHVNFQSLDAASVIE-- 307

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRD 331
                       + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +D
Sbjct: 308 ------------NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKD 355

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           L  L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 356 LQHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 389


>gi|327402274|ref|YP_004343112.1| 23S rRNA m(5)U-1939 methyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327317782|gb|AEA42274.1| 23S rRNA m(5)U-1939 methyltransferase [Fluviicola taffensis DSM
           16823]
          Length = 475

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 140/397 (35%), Gaps = 55/397 (13%)

Query: 11  EQQLAEKVDRLRQMMLAFQ-VPNLQ------IFRSEPIHYRMRAEFHIWH---------D 54
           E Q   K      +      +P+        I   E   YR + E+             +
Sbjct: 90  ELQQEYKKKATLDVYRKIGRIPDPSALFDTFISSPEAFFYRNKMEYSFSCIEHVPETGEE 149

Query: 55  GDDLYHIMFDQQT------KERMRIDYFMPGSLLINALMIEMMATIRL---EPLLRAKLF 105
            DD + + F ++               F      I     +++ T  L    P  +   F
Sbjct: 150 LDDAFALGFKRRGTWWKVENLNKPSGLFDEQWETILPQFRDLLKTFGLPAWHPPKKEGFF 209

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR-------KYQIQLIGRANKT 158
           +   +    DQ  + L          +    ++   L  +        +       A++ 
Sbjct: 210 RHIVVRKSFDQDKILLHIVTSSAGIKKFDKKQVVAFLTEKLGNRLAGVWHTINDNIADRA 269

Query: 159 KICLDRD---YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--- 212
           KI        Y D  +      L +     SF Q N      +    +        D   
Sbjct: 270 KIENGTSELLYGDSVVVEKMLGLSFEISMESFFQTNPKSAERLYTKAIDYVCDHAKDGGV 329

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++L+CG G    ++A+      ++ V+I + ++E A+ N   N+++++        +F 
Sbjct: 330 IMDLFCGTGTIGQLVAQRVNAGEIIGVDIVEEAIEDAKRNAKRNNLSHLHFFAADVGKF- 388

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
                      L     +  R  TI +DPPR+G+   T+  V A    H++YISCNP + 
Sbjct: 389 -----------LTLHPEYLNRIDTIVLDPPRAGIAPKTLQKVIALGASHLVYISCNPSTQ 437

Query: 329 CRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
            RD   L    + + +L+L DQFP+T H+E   +  +
Sbjct: 438 ARDTETLEKGGYKLTKLSLVDQFPHTSHIEAIAVYEK 474


>gi|291278654|ref|YP_003495489.1| tRNA (uracil-5-)-methyltransferase [Deferribacter desulfuricans
           SSM1]
 gi|290753356|dbj|BAI79733.1| tRNA (uracil-5-)-methyltransferase [Deferribacter desulfuricans
           SSM1]
          Length = 393

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 77/366 (21%), Positives = 142/366 (38%), Gaps = 53/366 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDLYH 60
                   Y+ Q+  K   +       +   +  +  S    YR RA F +     +   
Sbjct: 77  GCQFGHIDYDYQIEIKKRLINNFFRKVEGFKIDSVITSPEFRYRFRATFRL----KNGKF 132

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
                ++ + + I   +     +   + ++    +   + +  + + +    + +  + T
Sbjct: 133 GFLGFKSNKFIPITDCLICKETVVEKISKIANEYKGSEINKCYIIENE----KGEALLNT 188

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
            I    L+D                     +IG   K KI       D  L +      Y
Sbjct: 189 DIKLGNLEDFKD------------------IIGLKTKNKIL-----GDSLLKIDVGDFYY 225

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
               +SF+Q N  +     E V++        +LELY G+G F+  +A+    VLA+E  
Sbjct: 226 YVGFDSFSQSNRFLLREFAEVVVS-FVDENDSVLELYAGSGFFTHKVAKKAKAVLAIEEN 284

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + ++      +   +V NV I+   ++              +K IDI+ Y   T+ VDPP
Sbjct: 285 REAISL----LKKLNVENVDIIYSKAE-------------NIKRIDINPY--NTLLVDPP 325

Query: 301 RSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           R+GL    +  +   +  I+Y+SCNP ++ RD+  LS  + +++    D FP T H+E  
Sbjct: 326 RTGLSKPVIDAISNRFEKIVYVSCNPSTMARDILRLSNNYDLKKYLFIDMFPNTYHIESI 385

Query: 360 VLLVRK 365
            LL RK
Sbjct: 386 ALLERK 391


>gi|303250139|ref|ZP_07336341.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252750|ref|ZP_07534641.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651202|gb|EFL81356.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859782|gb|EFM91804.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 391

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 132/395 (33%), Gaps = 48/395 (12%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGD 56
           +S   L   Y  QL  K   L++++  F + N    L   +S    +R +A+  +    +
Sbjct: 14  VSCQWLEKPYATQLTYKEIDLKRLISPFILQNFTEILPPVQSSQKQFRNKAKMVVSGSVE 73

Query: 57  DLYHIMFDQQTKERMRIDYF-------------MPGSLLINALMIEMMATIRLEPLLRAK 103
                +   QT  +  ID                     I    +      + +  L+  
Sbjct: 74  RPILGILKDQTDPQSGIDLCDCPLYPTEFEALFPILKDFIARAGLVPYNIAKKKGELKYI 133

Query: 104 LFQIDYLTSQSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTK 159
           L              V      R L +      +            IQ    A    +T+
Sbjct: 134 LLTQSRYNQSIMLRFVLRSEQKRPLVERELPNLLAKLPKDSVVSLNIQPQHAAILEGETE 193

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
           I L      E        +        F Q N  +   +        K +      +L+C
Sbjct: 194 IFLTEKTTIEE---NFNDIPLFIRPQGFFQTNPNVASQLYATAQNWIKDLAIQQFWDLFC 250

Query: 219 GNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           G G F L  A+          +  +EI+  ++ +A  +     + N+    + S +F   
Sbjct: 251 GVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQFA-- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                       ++  S     + V+PPR G+       +     P+++Y SCN  ++ +
Sbjct: 309 ------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNARTMAQ 356

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 357 DFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|307246027|ref|ZP_07528109.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307255009|ref|ZP_07536827.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259445|ref|ZP_07541170.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306852962|gb|EFM85185.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306861882|gb|EFM93858.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866381|gb|EFM98244.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 391

 Score =  183 bits (465), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 144/395 (36%), Gaps = 48/395 (12%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGD 56
           +S   L   Y  QL +K   L++++  F + N    L   +S    +R +A+  +    +
Sbjct: 14  VSCQWLEKPYATQLTDKEIDLKRLISPFILQNFTEILPPVQSSQKQFRNKAKMVVSGSVE 73

Query: 57  DLYHIMFDQQTKERMRIDYF-----MPGSLLINALMIEMMATIRLEPLL----RAKLFQI 107
                +   QT  +  ID             I  ++ + +A   L P      + +L  I
Sbjct: 74  RPILGILKDQTDPQSGIDLCDCPIYPTEFEAIFPILKDFIARAGLVPYNISKKKGELKYI 133

Query: 108 DYLTSQSDQAIVTLI-----YHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTK 159
               S+ +Q+++          R L +      +            IQ    A    +T+
Sbjct: 134 LLTQSRYNQSVMLRFVLKSEQKRPLVERELPNLLAKLPKDSVVSLNIQPQHAAILEGETE 193

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
           I L      E        +        F Q N  +   +        K +      +L+C
Sbjct: 194 IFLTEKTTIEE---NFNDIPLFIRPQGFFQTNPNVASRLYATAQNWIKDLPIQQFWDLFC 250

Query: 219 GNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           G G F L  A+          +  +EI+  ++ +A  +     + N+    + S +F   
Sbjct: 251 GVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQFA-- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                       ++  S     + V+PPR G+       +     P+++Y SCN  ++ +
Sbjct: 309 ------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNARTMAQ 356

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 357 DFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|46143326|ref|ZP_00135468.2| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208584|ref|YP_001053809.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|126097376|gb|ABN74204.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 391

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 133/395 (33%), Gaps = 48/395 (12%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGD 56
           +S   L   Y  QL +K   L++++  F + N    L   +S    +R +A+  +    +
Sbjct: 14  VSCQWLEKPYATQLTDKEIDLKRLISPFILQNFTEILPPVQSSQKQFRNKAKMVVSGSVE 73

Query: 57  DLYHIMFDQQTKERMRIDYF-------------MPGSLLINALMIEMMATIRLEPLLRAK 103
                +   QT  +  ID                     I    +      + +  L+  
Sbjct: 74  RPILGILKDQTDPQSGIDLCDCPLYPTEFEALFPILKDFIARAGLVPYNISKKKGELKYI 133

Query: 104 LFQIDYLTSQSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTK 159
           L              V      R L +      +            IQ    A    +T+
Sbjct: 134 LITQSRYNQSIMLRFVLKSEQKRPLVERELPNLLAKLPKDSVVSLNIQPQHAAILEGETE 193

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
           I L      E        +        F Q N  +   +        K +      +L+C
Sbjct: 194 IFLTEKTTIEE---NFNDIPLFIRPQGFFQTNPNVASQLYATAQNWIKDLAIQQFWDLFC 250

Query: 219 GNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           G G F L  A+          +  +EI+  ++ +A  +     + N+    + S +F   
Sbjct: 251 GVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQFA-- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                       ++  S     + V+PPR G+       +     P+++Y SCN  ++ +
Sbjct: 309 ------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNARTMAQ 356

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 357 DFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|78486531|ref|YP_392456.1| RNA methyltransferase [Thiomicrospira crunogena XCL-2]
 gi|78364817|gb|ABB42782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thiomicrospira
           crunogena XCL-2]
          Length = 407

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 123/373 (32%), Gaps = 66/373 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIH---YRMRAEFHIWH--DG 55
              L     + Q   K       +     +   QI      H   YR RA   +      
Sbjct: 76  GCQLQHLSIDAQRKWKASHFYTALSKAVNMKACQIEAPLVGHDHAYRRRARLVLGKNKTD 135

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +       + + E + I+     +  +N  + +                          
Sbjct: 136 KEARFGFRAKGSNEIVDIEQCPLLTPALNEALNQKRTA---------------------- 173

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V     R L +      I + DA +   +  Q +  +                +   
Sbjct: 174 ---VLPHASRALKE------ISVVDADNGIFWSDQAVDSST-------------WPSYGV 211

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             L        F Q NA +N  M+   L       +  +L+L+CG GNF+L +A+    V
Sbjct: 212 NGLTLNFPAQGFVQVNAEMNEQMVNKALDWLDLNKEQRVLDLFCGVGNFTLPIAQQVKEV 271

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSS-KEFTQAMRREREFNRLKDIDIHSYRFK 293
           + +E     V+ A++N +  H       +    K+ T      ++            ++ 
Sbjct: 272 VGIEGETDLVQMAQHNASRAHCEQATFYQADLFKDVTPQNWFRKQ------------KYD 319

Query: 294 TIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
            + +DP R G      G+ Q     I+Y+SCN  +L RD+  L    + +++  + D FP
Sbjct: 320 RVLLDPGRQGAYQLCKGLGQLKADKIVYVSCNASTLIRDVKELEKQGYQLKKAIMVDMFP 379

Query: 352 YTRHMECGVLLVR 364
           +T H E    L++
Sbjct: 380 HTSHTEVMAQLIK 392


>gi|145632344|ref|ZP_01788079.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae 3655]
 gi|229843981|ref|ZP_04464122.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           6P18H1]
 gi|144987251|gb|EDJ93781.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae 3655]
 gi|229812975|gb|EEP48663.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae
           6P18H1]
          Length = 391

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/395 (19%), Positives = 136/395 (34%), Gaps = 49/395 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQL EK   L+Q +++      Q    F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLTEKQYHLKQKLISINYDEAQWVAPFQSNEQGFRNKAKMVVSGSVERP 73

Query: 59  YHIMFDQQTKE----RMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLFQ 106
              +      +          +      I +++ + +    L P         L+  L  
Sbjct: 74  ILGILKNNDPQSAIDLCDCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKYILLT 133

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKIC 161
               T +     V    ++ L    RE    L+   H     I L  +       + +I 
Sbjct: 134 ESIATEKLMLRFVLRTENK-LPLIRRELPKLLKKLPHLEMISINLQPQHAAILEGEQEIF 192

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGN 220
           L      + L      +        F Q N  +   +              +L +L+CG 
Sbjct: 193 LTE---QQFLPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCGV 249

Query: 221 GNFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           G F L  A+              +EI+  ++ AA  +     + +V    + +    +  
Sbjct: 250 GGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASNSAKILDLEHVNFQSLDAASVIE-- 307

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRD 331
                       + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +D
Sbjct: 308 ------------NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKD 355

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           L  L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 356 LQHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 389


>gi|255282151|ref|ZP_05346706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
 gi|255267099|gb|EET60304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
          Length = 533

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 115/265 (43%), Gaps = 27/265 (10%)

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            Q+  A++  +  RL      +    +   LH     +  + ++++T I   +D+  E L
Sbjct: 290 GQTGAALLQGLAERL---RALQLDGTIAGILHTVNDSLADVIKSDRTDILYGKDFFYEEL 346

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230
                 L ++    SF Q N+     + +   +     +   + +LY G G  + +LA  
Sbjct: 347 L----GLRFKISPFSFFQTNSLGAEVLYDRARSYVGETKDKTIFDLYSGTGTIAQILAPV 402

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +V+ VEI + +V AA+ N AAN ++N + +                   LK ID    
Sbjct: 403 ARKVVGVEIVEEAVAAAKENAAANGLDNCEFLAGDV---------------LKVIDSVEE 447

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILST-THTIERLAL 346
           +   I +DPPR G+    +  + A+     ++YISC P SL RDL+ L    + ++R+  
Sbjct: 448 KPDIIVLDPPRDGIHPKALEKIGAHIRAKRMIYISCKPTSLARDLAELQKYGYQVDRVCC 507

Query: 347 FDQFPYTRHMECGVLLVRKPSGWHQ 371
            D FP + H+E    L  K +  + 
Sbjct: 508 VDMFPGSVHVETVCELALKENQQND 532



 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 74/237 (31%), Gaps = 33/237 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIW--HDGD 56
             T     YE QLA K  ++++++            +   E   YR + EF     + G 
Sbjct: 81  GCTYQNLPYEAQLALKEQQVKKLLDEVCPEYVFEGILGSPEQSGYRNKMEFSFGDEYFGG 140

Query: 57  DLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMA-----------TIRLEPLLRAKL 104
            L   M  + +  + + +            ++  ++             +R    LR  L
Sbjct: 141 PLALGMHKRGSFYDIVTVSGCRIVDEDFRRILACVLDYFRETQTPFYHKLRHTGYLRHLL 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECA--------IRLRDALHARKYQIQLIG 153
            +    T +    +VT   L      DDA +E             +         +Q  G
Sbjct: 201 VRKAKKTGEILIDLVTTSRLELPGAEDDAAQEKEAVPRIGESENAQGCAAQEDETVQRTG 260

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
            +  T+ C  ++  DE +   G +   ++      Q  A +   + E + A      
Sbjct: 261 ESENTQGCAAQE--DETVPRIGESENAQENGG---QTGAALLQGLAERLRALQLDGT 312


>gi|322498729|emb|CBZ33802.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 603

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 21/214 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           Y    LT     L +     +F Q N      M+  V    +   G  LL+L  G G   
Sbjct: 358 YGAPTLTEYLAGLCFELSPTAFFQVNTPGMETMMMKVAEVAELSAGTTLLDLCSGTGTIG 417

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L L++H  RV+ +E+ + +V  AR N   N + N +      +    ++          D
Sbjct: 418 LTLSKHVKRVIGIELVESAVANARRNAQQNGITNAEFHCGRVEHLLPSVISGLPAEDRGD 477

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILST---- 337
           I         + +DPPR+G++   +  ++       ++YISC   +L RD   L+     
Sbjct: 478 I--------VVILDPPRAGVNSTVLRWIRGMETIRRVVYISCEQRALERDCPGLTKPSTK 529

Query: 338 -----THTIERLALFDQFPYTRHMECGVLLVRKP 366
                   +      D FP+T H+E   +L R+P
Sbjct: 530 AYRGTPFEVTAAFAVDLFPHTHHVEMVAVLTRRP 563


>gi|146085495|ref|XP_001465291.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134069388|emb|CAM67541.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 603

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 21/214 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           Y    LT     L +     +F Q N      M+  V    +   G  LL+L  G G   
Sbjct: 358 YGAPTLTEYLAGLCFELSPTAFFQVNTPGMETMMMKVAEVAELSAGTTLLDLCSGTGTIG 417

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L L++H  RV+ +E+ + +V  AR N   N + N +      +    ++          D
Sbjct: 418 LTLSKHVKRVIGIELVESAVANARRNAQQNGITNTEFHCGRVEHLLPSVISGLPAEDRGD 477

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILST---- 337
           I         + +DPPR+G++   +  ++       ++YISC   +L RD   L+     
Sbjct: 478 I--------VVILDPPRAGVNSTVLRWIRGMETIRRVVYISCEQKALERDCPGLTKPSTK 529

Query: 338 -----THTIERLALFDQFPYTRHMECGVLLVRKP 366
                   +      D FP+T H+E   +L R+P
Sbjct: 530 AYRGTPFEVTAAFAVDLFPHTHHVEMVAVLTRRP 563


>gi|260581961|ref|ZP_05849757.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae
           NT127]
 gi|260095154|gb|EEW79046.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae
           NT127]
          Length = 392

 Score =  182 bits (463), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 78/396 (19%), Positives = 132/396 (33%), Gaps = 50/396 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQL EK   L+Q +++        L  F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLTEKQYHLKQQLISINYDEAQWLAPFQSNEQGFRNKAKMVVSGSVERP 73

Query: 59  YHIMFDQQTKERMRIDYFM-------------PGSLLINALMIEMMATIRLEPLLRAKLF 105
              +       +  ID                     I    +      + +  L+  L 
Sbjct: 74  ILGILKNPNDPQSAIDLCDCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKYILL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKI 160
                T +     V    ++ L    RE    L    H     I L  +       + +I
Sbjct: 134 TESIATEKLMLRFVLRTENK-LPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEI 192

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219
            L      + L      +        F Q N  +   +              +L +L+CG
Sbjct: 193 FLTE---QQFLPENFNDIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCG 249

Query: 220 NGNFSLVLARHFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            G F L  A+              +EI+  ++ AA  +     + +V    + +    + 
Sbjct: 250 VGGFGLHCAKALQEKWGKPIKLTGIEISSSAILAASNSAKILDLEHVNFQSLDAASVIE- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCR 330
                        + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +
Sbjct: 309 -------------NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGK 355

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           DL  L+  +   ++ LFD FP T H E  VLL RK 
Sbjct: 356 DLQHLTC-YKPLKIQLFDMFPQTSHYEVLVLLERKK 390


>gi|291286810|ref|YP_003503626.1| (Uracil-5)-methyltransferase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883970|gb|ADD67670.1| (Uracil-5)-methyltransferase [Denitrovibrio acetiphilus DSM 12809]
          Length = 387

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 136/369 (36%), Gaps = 61/369 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
                   YE QL  K   L+  +     + P  +I  ++   +R RA F I     D  
Sbjct: 76  GCVFGHISYENQLELKAGFLKNALERNRVEFPEPEIISADFKEFRNRATFRIR----DGK 131

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
              +  +T + + ID        +     E+   +     +     +      ++D A+ 
Sbjct: 132 IGFYKFKTNDFIPIDECPVIKKSMIEKAKELAGAVEGRSYIYITENEKGEALGRTDAAL- 190

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
                                     K+    +    K    + R +    L    R   
Sbjct: 191 ------------------------DSKFSFDGLKSGEK---AIGRKH----LGFDTRYGT 219

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           +    NSF Q N  I+  + ++VL  ++G  G  LELYCG+G  +L +AR  +++ AVE 
Sbjct: 220 FYVGFNSFLQGNRYISNALQDFVLEHSEGRLG--LELYCGSGYLTLPMARKCEKIDAVES 277

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             PS+  A        + NV      S+      +R                   I  DP
Sbjct: 278 YAPSIRLAERT----KLKNVTWHVAMSENMKGMGKR---------------SLDMIVADP 318

Query: 300 PRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           PR+G++      ++       +YISC+P++  RD + LS  + IE + + D FP + H+E
Sbjct: 319 PRTGMEKEVCNYIKNSDADRFIYISCDPNTFARDAARLSEFYKIEHMVICDMFPGSYHLE 378

Query: 358 CGVLLVRKP 366
              LL RK 
Sbjct: 379 TMALLRRKK 387


>gi|326773057|ref|ZP_08232341.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces viscosus
           C505]
 gi|326637689|gb|EGE38591.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces viscosus
           C505]
          Length = 408

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 140/389 (35%), Gaps = 46/389 (11%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
             QLA K  R+  ++       L      S P  +R +A+  +          + D    
Sbjct: 30  PDQLATKQSRVAALLAEHVPAGLWQAPAASAPTGFRNKAKMAVAGTAAHPTLGILD-GAG 88

Query: 69  ERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQSDQAIVTL 121
             + +         I A +  +   I          P  R +L  I    S  D  +V  
Sbjct: 89  CGVDLRTCPLHVPAIKAALPVLADLITELGLRPYDVPTRRGELKYILVTASPDDDLLVRF 148

Query: 122 I-YHRLLDDAWRECAIRLRDALHA-------RKYQIQLIGRANKTKICLDRDYVDERLTV 173
           +   R   +  R     LR  L          +   Q +    +  +  + D +  RL++
Sbjct: 149 VLRSRRYLERLRAAVPDLRRRLPQLAVAAVNIQSVHQAVIEGPEEIVLTEEDRLLMRLSL 208

Query: 174 AG-------------RTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCG 219
                            L       SF Q N  +   +       A +     + +L+CG
Sbjct: 209 PSPGLGSRAGRRAESVELPLYLPTRSFFQTNTAVAEALYATARNWAEEAEPARVWDLFCG 268

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRER 277
            G+F+L LA    +VL VE++ P+++ AR       ++   V+     ++    A     
Sbjct: 269 VGSFALALAAPGRQVLGVEVSAPAIDGARAAADLMGLDPALVRFEAGDARVLDPAAGERA 328

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335
              +  D+         + V+PPR G+ +     ++A     +LY SCNP +L  DL+ L
Sbjct: 329 GGVQHPDL---------LVVNPPRRGIGEQLATRIEASGVERVLYSSCNPRTLATDLAHL 379

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
            +   + R  LFD FP+T H E  V LVR
Sbjct: 380 PSM-RVVRSRLFDMFPHTEHAEVLVELVR 407


>gi|296270254|ref|YP_003652886.1| deoxyribonuclease/rho motif-related TRAM [Thermobispora bispora DSM
           43833]
 gi|296093041|gb|ADG88993.1| deoxyribonuclease/rho motif-related TRAM [Thermobispora bispora DSM
           43833]
          Length = 407

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 127/367 (34%), Gaps = 59/367 (16%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQI------FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
            Q   K + + + +      +  +        S  + +R R  F    DG      +   
Sbjct: 87  AQRRLKAEVVSEQLRRLAGIDRAVEVEEVPGASGGLGWRTRVRFAAGPDG---RLGLRRH 143

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++ E   +         +  +  E       +         ++   S      V +   R
Sbjct: 144 RSHEIEYVGSCPIAHPGVEEVGAEARRWPGAD--------TVEVAVSSGGDRAVIIRPRR 195

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +              +      + L       ++      + ER         +R   +
Sbjct: 196 RVT-------------VPEVDASVLLDQGRRGVRVLTGSPSLTERAGDRE----FRVTGS 238

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAK 241
            F Q + G    +L  VL   +   G+  L+LYCG G F+  L         VL +E   
Sbjct: 239 GFWQIHPGAPETLLRTVLELGRPAPGERALDLYCGAGLFAAGLGEAVGPEGSVLGIESDP 298

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V  AR+N+    + N +I R   +E   A  R                   +  DPPR
Sbjct: 299 QAVRDARWNLR--DLPNTRIERGRVEEALGAAARA----------------DLVVADPPR 340

Query: 302 SGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMEC 358
           +GL    V  +        +Y+SC+P ++ RD++ L+   + +  L  FDQ+P T H+EC
Sbjct: 341 TGLGREVVERIAGLGPSRFVYVSCDPATMSRDIAWLTPHGYELAELRAFDQYPMTHHVEC 400

Query: 359 GVLLVRK 365
             LLVR+
Sbjct: 401 VALLVRR 407


>gi|39943740|ref|XP_361407.1| hypothetical protein MGG_03881 [Magnaporthe oryzae 70-15]
 gi|145014577|gb|EDJ99145.1| hypothetical protein MGG_03881 [Magnaporthe oryzae 70-15]
          Length = 612

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 137/416 (32%), Gaps = 81/416 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR------SEPIHY------------ 43
                   YE QLA K   + +    F     ++          P+ Y            
Sbjct: 214 GCQFQPMSYEDQLAHKRKVVEKAFKNFSDLPPELIPAAGPTIGSPLQYAYRTKLTPHFSM 273

Query: 44  ----RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
               R +    I H        M  +  K  + I+    G+ +IN  M    A +     
Sbjct: 274 PPGARRKQGPPIRHQEVPPIGFML-KGRKTVLDIEECPIGTEVINKGMKRERA-VVASKF 331

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
                     L   +++          +  + R+  +R    +    +       +  ++
Sbjct: 332 DTYSAGATILLRESTERFYKKDAAETPIPTSIRDDQVR----VETEDFVEIKSCISEGSQ 387

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------- 212
             L  +YVD          +++   +SF Q N  I   +  +V         +       
Sbjct: 388 --LATEYVD--------NFVFKNKASSFFQNNNSILPSLTNYVRENAISYNNEDGKPSVT 437

Query: 213 -LLELYCGNGNFSLVLARHF------DRVLAVEIAKPSVEAARYNIAANHVNN--VKIVR 263
            L++ YCG+G FS+  A  F       R + ++I   + E A  N   N+  +   + + 
Sbjct: 438 NLIDAYCGSGLFSITCAPLFISDEVKGRAIGIDIDGQATERAGLNAKLNNYPDGKCEFIE 497

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYI 321
             + +  Q +            D  +     + +DPPR G D + +  +       ++Y+
Sbjct: 498 ADAPKLFQKL------------DGFNPDETAVVIDPPRKGCDVSFLTQLLVFKPKRLVYV 545

Query: 322 SCNPDSLCRDLSILSTTH-------------TIERLALFDQFPYTRHMECGVLLVR 364
           SCN  +  RD+ IL   +              IE +  FD FP T H+E   +L R
Sbjct: 546 SCNVHTQARDVGILVRGYVDGLPAPVGGARYKIESVRGFDLFPQTSHVEGVAVLTR 601


>gi|281353795|gb|EFB29379.1| hypothetical protein PANDA_009403 [Ailuropoda melanoleuca]
          Length = 631

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 76/439 (17%), Positives = 132/439 (30%), Gaps = 94/439 (21%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 172 PYAEQLERKRLECEQVLQKLAKEIGSTNRALLPWLLSQRHKHNKACCPLEGVRPSPQQTE 231

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   I  DG+D        + K           ++ I     +++         
Sbjct: 232 YRNKCEFLVGIGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPGATKQVVKAFQEFIRS 291

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL---------LDDAWRECAIRLRD 140
                           Q+   TS+  QA+  + +H           L  +  +  +    
Sbjct: 292 TPYSAYNPETYSGHWKQLTVRTSRRGQAMAIVYFHPQKLGPEELAGLKASLAQHFMAGPG 351

Query: 141 ALHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                     +     KT     + L+    D  +      L +R   ++F Q N     
Sbjct: 352 KATGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTLAAE 411

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA------------------RHFDRVLAV 237
            +   +    +   G  +L++ CG G   L LA                  +   RV+ +
Sbjct: 412 VLYTVIQDWAQLDTGSTVLDVCCGTGTIGLALAPVSLWDGVGRHESVLSWLQRVKRVVGI 471

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+ + +VE AR N   N + NV+     +++    +       +L              +
Sbjct: 472 ELCQEAVEDARVNARDNELTNVEFHCGRAEDLVPTLVSRLASQQL-----------VAIL 520

Query: 298 DPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILST---------THTIERLA 345
           DPPR+GL    +  V+       +LY+SCNP +   +   L                +  
Sbjct: 521 DPPRAGLHSKVILAVRRAENLRRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFRPVKAV 580

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H E  +L  R
Sbjct: 581 AVDLFPQTPHCEMLLLFER 599


>gi|92113761|ref|YP_573689.1| RNA methyltransferase [Chromohalobacter salexigens DSM 3043]
 gi|91796851|gb|ABE58990.1| 23S rRNA m(5)U-1939 methyltransferase [Chromohalobacter salexigens
           DSM 3043]
          Length = 475

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 143/373 (38%), Gaps = 32/373 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
              L     E Q   K   L ++       +P +++   E + YR RA   +  D +   
Sbjct: 106 GCDLQHLDLEAQREHKRRTLDELFTRQGLTLPEIEVLAGEGLAYRRRARLGVKCDAEGTP 165

Query: 60  HIMFD-QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           H+ F  + ++  + ID  +    +++ L+  + A +      R ++  I+ + +     +
Sbjct: 166 HLGFRARGSEHLIDIDSCVVLEPVLSRLIAPLRACLVQLEAPR-RVGHIELIATAEGACV 224

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD---RDYVDERLTVAG 175
           V     R L +   + A   R A          +GR   T   L     + +   L +  
Sbjct: 225 VV----RQLREVPGDEARWRRFAAEHDVTLAWRVGREAPTLRWLHAPRGEALHVTLVLDD 280

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARHFDRV 234
            TL    +   F Q NA +N  ++   LA      +  +L+L+ G GNF+L LA     +
Sbjct: 281 TTLSLGCVPGDFLQINADVNARLVRTALAWLAPRGEERVLDLFAGVGNFTLALAPRVASI 340

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             +E +   VE    N     ++ V   +              +   +  +D        
Sbjct: 341 TGIEGSPAMVERLADNARRAGLHQVGAQQSDLA---------TQVPEVAAVDW------- 384

Query: 295 IFVDPPRSGLDDATVGMVQAYP--HILYISC-NPDSLCRDLSILSTTHTIERLALFDQFP 351
           + +DPPR G  +A    +   P   +LY+SC           ++   + I+R AL D FP
Sbjct: 385 VIMDPPRGGA-EALCRALADSPVTTLLYVSCDPAALARDAARLVQGGYRIQRAALADMFP 443

Query: 352 YTRHMECGVLLVR 364
           +T H+E  +LL R
Sbjct: 444 HTAHLESMLLLTR 456


>gi|255953869|ref|XP_002567687.1| Pc21g06420 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589398|emb|CAP95539.1| Pc21g06420 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 537

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 135/406 (33%), Gaps = 63/406 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--VPNL-----QIFRSE-PIHYRMRAEFHIWH 53
              L +  Y+ QLA K   + +    F   +P L     + F S     YR +   H  H
Sbjct: 143 GCQLQMMSYDDQLAHKRRIVEKAYANFSGLIPELVPTIGETFASPMQYGYRTKLTPHFAH 202

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
            G         + +K+            +        +     +  L   + +    + +
Sbjct: 203 GGAG-------KGSKKDGEEPSQPQVPPIGFTYKNRRLDMDIEDCPLGTDIVRRGLTSER 255

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRD--------ALHARKYQIQLIGRANKTKICLDRD 165
              A     Y R      RE   R+                             I ++R+
Sbjct: 256 KRVAENIRSYKRGATLLMRESTARIPKDAAPTADGEAPTVGGIAATPNADTGDVIRIERE 315

Query: 166 -YVDERLTVAGR---------TLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQG 211
            Y++E+  V              I+     +F Q N  I      ++    + A      
Sbjct: 316 NYIEEKRCVTDNNATSFEYVDDYIFSNKAGAFFQNNNSILSGFTEYIRSQAIPAGNDKDA 375

Query: 212 D----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                LL+ Y G+G F++ L+  F   L V+I   S+ +AR N  AN + N       + 
Sbjct: 376 KPIKYLLDAYSGSGLFTITLSPLFKSSLGVDIGGDSIVSARENARANKLPNTGFAAADAA 435

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325
              + +    +                + +DPPR G  +  +  +  +    ++Y+SCN 
Sbjct: 436 TLFKDVPYPPD-------------QTLLVIDPPRKGCSEDFLRQMLDFKPRRVVYVSCNV 482

Query: 326 DSLCRDLSILSTT-------HTIERLALFDQFPYTRHMECGVLLVR 364
            +  RD++++          + IE +  FD FP T H+E   +L R
Sbjct: 483 HTQARDVAVMVQGDEKQNVRYEIESVRGFDFFPQTGHVEGVAILNR 528


>gi|332140216|ref|YP_004425954.1| RNA methyltransferase, TrmA family protein [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550238|gb|AEA96956.1| RNA methyltransferase, TrmA family protein [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 482

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 132/355 (37%), Gaps = 25/355 (7%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQQTKERMRI 73
           A K+   RQ+ +   V    +    P  YR +A   I   + D++     +  + + + +
Sbjct: 147 ALKIMMERQLSIGSGVWQAPLVGPRPQ-YRRKARLAIDARNPDNIKLGFREANSNKVVNL 205

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           D        ++  +  +   +      R  +  I  +    ++A V + + + L+DA  E
Sbjct: 206 DTCPILVNPLSTAIGPLRNALEGYDSARH-IGHISLIAG-DNRAQVVIKHTKALEDALIE 263

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                  AL         +   NK             +             N F Q N  
Sbjct: 264 TVDAFAKALGL------DVVLENKQGRLRSVGEAQGLIMHTVDGCSISPSANDFIQINKV 317

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           +N  M+   L        + + + + G GNF+L +A+    V A+E     V  A+ N  
Sbjct: 318 VNEKMINQALVWLDPRPNERIADWFSGLGNFTLPIAKKGALVQAIEGVAEMVLRAKDNAQ 377

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              + NV+ + +               N+          F  + +DP R G       +V
Sbjct: 378 QQGIENVEWLHLDLA------------NKANVEASLQQGFDKVLLDPSREGALTVCHALV 425

Query: 313 QAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +A P  I+Y+SCNP +  RD  +L +  + +E+  + + FP+T HME   L  ++
Sbjct: 426 KALPKTIVYVSCNPSTFSRDAKVLINGGYEMEKAGVAEMFPFTHHMEMMALFTQR 480


>gi|290956885|ref|YP_003488067.1| tRNA methyltransferase [Streptomyces scabiei 87.22]
 gi|260646411|emb|CBG69507.1| putative tRNA methyltransferase [Streptomyces scabiei 87.22]
          Length = 433

 Score =  182 bits (462), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 135/375 (36%), Gaps = 62/375 (16%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ---------------IFRSEPIHYRMRAEFHIWHDGD 56
            Q   K + + + +        +               +   E   +R R ++ +  DG 
Sbjct: 92  AQRRFKGEVIAEQLQRLAGLTPEEAGWDGTVMPAEGDKVPAGEVPAWRTRVQYAVDADG- 150

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +   ++ E   ID+ M  +  ++ L IE            A +  +D + +   Q
Sbjct: 151 --RAGLRRHRSHEVEPIDHCMIAAPGVSELGIEKRDW--------AGMASVDAIAATGSQ 200

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-CLDRDYVDERLTVAG 175
               ++  R           RL      +   +  +   +        R +V ER     
Sbjct: 201 DRQVILEPRP--------GARLPLVELDKPVSVMRVEEKDGGVHRVHGRPFVRER----A 248

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD-- 232
               YR     F Q +      +++ V+      +GD+ L+LYCG G F+  LA      
Sbjct: 249 DDRTYRVGSGGFWQVHPKAADTLVKAVMQGLLPRKGDMALDLYCGVGLFAGALADRVGDK 308

Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             VL +E  K +VE AR+N+A    + V+I +   +        E               
Sbjct: 309 GAVLGIESGKRAVEDARHNLA--GFDRVRIEQGKVEAVLPRTGIE--------------E 352

Query: 292 FKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
              I +DPPR+G    TV  +       I Y++C+P +L RDL       + +  L  FD
Sbjct: 353 VDLIVLDPPRAGAGKKTVQHMASLGARRIAYVACDPAALARDLGYFREGGYRVRMLRAFD 412

Query: 349 QFPYTRHMECGVLLV 363
            FP T H+EC  +L 
Sbjct: 413 LFPMTHHVECVAILE 427


>gi|145634669|ref|ZP_01790378.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           PittAA]
 gi|145268214|gb|EDK08209.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
           PittAA]
          Length = 204

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 15/207 (7%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
           +++ Y D         +        F Q N  +N  M+   L   +  Q D +L+L+CG 
Sbjct: 10  IEQIYGDAPYYQFSDGIKLHFDIRDFIQVNRALNERMVNTALDWLELSQQDCVLDLFCGM 69

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           GNF+L LA+     + +E     V+ A  N A N + N++  +       Q+   +   N
Sbjct: 70  GNFTLPLAKRVKSAVGIEGVFEMVQKAAQNAARNQIKNIEFFQAD---LDQSFVEQPWAN 126

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-T 338
           +          F  I +DPPRSG   A   + +     ILY+SCNP +L RD  IL    
Sbjct: 127 Q---------SFNKILLDPPRSGAAFALNALCELKAEKILYVSCNPATLVRDAEILCDFG 177

Query: 339 HTIERLALFDQFPYTRHMECGVLLVRK 365
           + IE+ A+ D FP+T H+E   L   K
Sbjct: 178 YKIEKSAVIDMFPHTGHLESITLFTTK 204


>gi|294636993|ref|ZP_06715315.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Edwardsiella tarda
           ATCC 23685]
 gi|291089821|gb|EFE22382.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Edwardsiella tarda
           ATCC 23685]
          Length = 355

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 130/369 (35%), Gaps = 39/369 (10%)

Query: 14  LAEKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           + +K   L  ++    V   L    S     R +A+  +    +     M  ++ +    
Sbjct: 1   MDDKQHHLAALLDDQPVGEWLPACPSAEQAMRNKAKMVVTGSVERPLLGMLTREGEGVDL 60

Query: 73  ID----------YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            D           F      I    +      R    L+  L     L  +     V   
Sbjct: 61  CDCPLYPTSFAPVFAVLKAFIPRAGLTPYNVARRRGELKYLLLTESRLNGEMMLRFVLRS 120

Query: 123 YHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVAGRT 177
            ++L  L  A      +L   L      +Q +  A    + +I L      E    +   
Sbjct: 121 ENKLAQLRQALPWLQAQLPQ-LAVISVNLQPVPMAILEGEQEIFLSEQQALEE---SFNG 176

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLA 236
           +       SF Q N  +   +        + +    + +L+CG G F L  A     +  
Sbjct: 177 VPLYIRPQSFFQTNPAVAEALYAEARDWVRALGVTAMWDLFCGVGGFGLHCATPEMALTG 236

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +EI+  ++  AR + A   +  V    + S  F                D H    + + 
Sbjct: 237 IEISAEAIACARRSAARLGLEKVSFAALDSTAFA---------------DEHGQAPQLVL 281

Query: 297 VDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
           V+PPR G+  A    ++  A P+ILY SCN  S+ +D++ L + + I ++ LFD FP+T 
Sbjct: 282 VNPPRRGIGVALCDDLRRMAPPYILYSSCNAQSMAQDIACLES-YRIAKIRLFDMFPHTA 340

Query: 355 HMECGVLLV 363
           H E   LLV
Sbjct: 341 HYEVLTLLV 349


>gi|313681652|ref|YP_004059390.1| 23S rRNA m(5)u-747 methyltransferase [Sulfuricurvum kujiense DSM
           16994]
 gi|313154512|gb|ADR33190.1| 23S rRNA m(5)U-747 methyltransferase [Sulfuricurvum kujiense DSM
           16994]
          Length = 372

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 148/376 (39%), Gaps = 43/376 (11%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQ-IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
            Y +QL  K D+L  ++  +Q    Q    S+   +R +A+       + +   + ++ +
Sbjct: 21  HYAEQLKLKSDQLHALLNKYQPNGWQKPVTSQLKGFRNKAKMVATPTPEGIVLGLSEEVS 80

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLE----PLLRAKLFQIDYLTSQSDQAIVTLIY 123
              +    +      +   + E +  + ++     L + +L  +    S+S+  ++    
Sbjct: 81  --LIDCPLYDLSMQKVLHSVQEWLRELGIKGYDIKLRKGELKYVLLTRSKSNGTMMLRFV 138

Query: 124 HR------LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDE--RLT 172
            R       L+    E   R  + L      IQ +  A      L+ D   ++ E  RL 
Sbjct: 139 LRSHGIIARLEGGLEELIKRSPE-LKVVTVNIQPVHMA-----ILEGDEEIFLSEQRRLE 192

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
                +       SF Q N  +   +          I+   L +L+CG G F+L  +   
Sbjct: 193 ERFNGIPLYIRPKSFFQTNPDVAEKLYRTASEWIDEIKPSRLWDLFCGVGGFALHCSAPE 252

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             ++ +EI   ++E AR + A   + N++   + +  F                     +
Sbjct: 253 REIIGIEIEPEAIECARDSAAQLEMTNLRFESLDAASFGA---------------NSGEK 297

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349
              + V+PPR GL +     ++     H++Y SCN  +L +DL  L + + I+++ LFD 
Sbjct: 298 PDAVIVNPPRRGLGEQLCKWLEKVSAEHLIYSSCNAVTLAKDLERLGS-YEIQKVQLFDM 356

Query: 350 FPYTRHMECGVLLVRK 365
           FP+T H E  V L ++
Sbjct: 357 FPHTEHYEVLVFLKKR 372


>gi|50556488|ref|XP_505652.1| YALI0F20196p [Yarrowia lipolytica]
 gi|49651522|emb|CAG78461.1| YALI0F20196p [Yarrowia lipolytica]
          Length = 566

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 142/388 (36%), Gaps = 77/388 (19%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPI----HYRMRAEFHIW 52
           SG       YE+QL +K + +      +         ++  + P      YR +   H  
Sbjct: 186 SGCQYQFMDYEKQLNQKRNVVVNAFRYYCHTEDAVLPEVGPTFPSPETMGYRTKLTPHYD 245

Query: 53  HDGDD--------LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL 104
                          +    +     + I+    G+ ++   + E    ++L        
Sbjct: 246 VPKTKSPEWLASPPPYGFNMKTVNRVLDIEDCPIGTPVVREGLKESREDVKL-------- 297

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
               Y T++  +  +        ++                       G  +K  +  ++
Sbjct: 298 ---HYKTAKRGKTYLLRENTIKKEE-----------------------GTFDKRCVTDNK 331

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPN----AGINVHMLEWVLAATKGIQGDLLELYCGN 220
             V E +        +      F Q N      +  ++ E +L         L++ YCG+
Sbjct: 332 AIVSEYI----DNYRFDFTAGEFFQNNNSILPAVTAYVRENILLDGGKPPRFLVDAYCGS 387

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G FS+  ++  ++V  VEI+  SV+ AR N   N +NN   +   ++            N
Sbjct: 388 GLFSITCSQAVEKVYGVEISDESVKFARKNAELNKINNAVFLTGKAE------------N 435

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSIL--- 335
             KD+D    +   + +DPPR G D+A +  +V   P  ++Y+SCN  +  RD++ L   
Sbjct: 436 IFKDLDCDPAQ-TCMIIDPPRKGTDEAFINQLVTFQPQRLVYVSCNVHTQARDVAYLLKQ 494

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + +E +  FD FP T+H+E   +L 
Sbjct: 495 CPEYKVESIRGFDFFPQTKHVEGVAVLS 522


>gi|301089440|ref|XP_002895021.1| RNA methyltransferase [Phytophthora infestans T30-4]
 gi|262104003|gb|EEY62055.1| RNA methyltransferase [Phytophthora infestans T30-4]
          Length = 545

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/470 (17%), Positives = 158/470 (33%), Gaps = 112/470 (23%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML-AFQVPNLQI-----FRSEP-----IHYRMRAEFH 50
              L    Y QQL EK + +R++       P+++I       ++        YR + EF 
Sbjct: 69  GCKLQHVSYTQQLREKQEWIRELFADRGHSPDMKIRDILGVETKENNGGVYSYRNKMEFT 128

Query: 51  IWH-----DGDDLY------------HIMF------DQQTKER----------------- 70
                   DGD                 MF       +++K+                  
Sbjct: 129 CSTGRWLLDGDKPTSDDSEAPRYPFTVGMFPVASVSARRSKQIHGKSKARRRRSAVWSPR 188

Query: 71  -MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL--------------TSQSD 115
            + ++  +  +   N L+ +++A      L        +                 ++  
Sbjct: 189 ILSLNECLLQASACNRLLQQLVARCEDVGLQAYDFNTHEGFLKQIVLRRGVNWQGRTEIM 248

Query: 116 QAIVTLIYH------------RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             +VT ++              L+ +  RE     +DA         L   A + K   D
Sbjct: 249 LGLVTTMFEGEQSELLQSIVQDLVREHQRELLTETKDAPQLVSIVESLDREAQRHKHRKD 308

Query: 164 RDYVDERLT-----------VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
            +  ++  T            +  +  +    +SF QPN+     +   +      +   
Sbjct: 309 SEPFEDTKTERVLYGSSHFEDSILSHRFEVTFDSFFQPNSNQASVLYREIQRMMAALPKK 368

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH--VNNVKIVRMSSKE 268
             + +L+CG G+  + +  + ++V+  E+   +VE A+ N   N    ++++   +    
Sbjct: 369 PVVWDLFCGVGSIGICMGAYAEKVVGFELVDAAVERAKVNARLNGYSADHMQFFCVD--- 425

Query: 269 FTQAMRREREFNRLKDIDIHSYR----FKTIFVDPPRSGLDDATVGMVQ--AYPHILYIS 322
             ++ + E   +R+                + VDPPR+GL    + M++  A  HI Y+S
Sbjct: 426 LAKSWQEEEFLDRIASHSDGGSSSSNLPDIVIVDPPRAGLQKKLIKMLRRLAPRHICYVS 485

Query: 323 CNPDSLCRDLSILS----------TTHTIERLALFDQFPYTRHMECGVLL 362
           CNP S   DL               T+ +  L   D  P+T H+E    L
Sbjct: 486 CNPHSQAPDLEAFCAKVKPEMGEVGTYRVRYLQPVDMLPHTPHIETVAWL 535


>gi|71415097|ref|XP_809627.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874038|gb|EAN87776.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 568

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 87/212 (41%), Gaps = 21/212 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           +    LT     L +     SF Q N  G+ + + E    A  G +  LL+L CG G   
Sbjct: 356 FGTPTLTEHLLGLRFELSPTSFFQVNTSGMELLLCETAKVAALGPKTTLLDLCCGTGVIG 415

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L LA+H  RV+ +E+ + +V  AR N   N + NV       +     +      N L +
Sbjct: 416 LTLAKHVKRVIGIELVESAVSDARQNAKRNDIANVTFCSGRVEHLLPDI-----INSLPE 470

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLCRDLSILST---- 337
            D          +DPPR+G+    +  ++  P    ++YISC   +L RD   L+     
Sbjct: 471 EDKTDI---VAILDPPRAGVTPTVLKWIRGTPTIRRVVYISCEQKALERDCPSLTKSTTK 527

Query: 338 -----THTIERLALFDQFPYTRHMECGVLLVR 364
                   +      D FP+T H+E   +L R
Sbjct: 528 AYRGLPFELVASFAVDLFPHTPHVEMVAVLAR 559


>gi|320158037|ref|YP_004190415.1| RNA methyltransferase, TrmA family [Vibrio vulnificus MO6-24/O]
 gi|319933349|gb|ADV88212.1| RNA methyltransferase, TrmA family [Vibrio vulnificus MO6-24/O]
          Length = 360

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 152/378 (40%), Gaps = 38/378 (10%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           +   Y QQL  K + LR +     Q   L   +S+ +H R +A+             +  
Sbjct: 1   MNTPYSQQLETKDNALRTLFSDVAQSAWLAPVQSDSMHCRNKAKMVALGAAHQPTLGIES 60

Query: 65  QQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPLLRAK----LFQIDYLTSQSDQA 117
            Q    + + +       S  + A + E + T  + P  + K    L  +    SQ+   
Sbjct: 61  VQDGTPISLVHCPLYTQDSQALLAYLQEWIRTSGIPPYNKVKKKGELKFVLLTRSQARGE 120

Query: 118 IVTLIYHR--LLDDAWRECAIRLRDALHAR---KYQIQLIGRAN---KTKICLDRDYVDE 169
            +     R     +  R    RLR A  A       IQ I  A    + +I L   +   
Sbjct: 121 FMLRFVVRSEAALERIRHNLPRLRQAFPAILVISANIQPIHMARLEGEQEIFLTDAHY-- 178

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            L      +       SF Q N  +   +          ++   + +L+CG G F+L  A
Sbjct: 179 -LLEVFNGVPMVVRPKSFFQTNPHVAAQLYATARDWVAELKPRQMWDLFCGVGGFALHCA 237

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
            H ++V+ +EI + ++ +A+ +     ++N++   + S  ++QA  +             
Sbjct: 238 PHAEQVIGIEIEEEAINSAKLSAQQLGIDNLRFSALDSAAYSQAQTQAA----------- 286

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
                 I V+PPR GL  A    ++  A  +++Y SCNP ++ +DL  L + + +ER   
Sbjct: 287 ----DLILVNPPRRGLGQALSEQLEQLAPQYLIYSSCNPMTMQQDLVHLPS-YQVERAQW 341

Query: 347 FDQFPYTRHMECGVLLVR 364
           FD FP+T H E  +LLVR
Sbjct: 342 FDMFPHTDHAEVMMLLVR 359


>gi|325288913|ref|YP_004265094.1| RNA methyltransferase, TrmA family [Syntrophobotulus glycolicus DSM
           8271]
 gi|324964314|gb|ADY55093.1| RNA methyltransferase, TrmA family [Syntrophobotulus glycolicus DSM
           8271]
          Length = 518

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/457 (16%), Positives = 147/457 (32%), Gaps = 115/457 (25%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    YE  L  K   +R  +L      ++    I   +P  YR +A  H    G  
Sbjct: 84  GCSVQHLSYEDTLQWKQSVVRDALLRIGRLEVEVRPVIGMEDPWEYRNKAVLHCDRRGRL 143

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
            Y+       K    +  F    LL   +  ++ A  ++    +  + ++ +  +   + 
Sbjct: 144 GYYA------KNSNDLVEFPHCKLLPQTMNAKIKALRQVLGAGKYDVQEVVFRENSRQET 197

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHAR-----KYQIQLIGRANKTKICLDRD------- 165
           ++ L   ++  +     +  +R +  A      ++Q        K  I + +        
Sbjct: 198 LICL-KGKMTGEEADRLSRAIRPSFQAAADIRGEWQADTGLPDEKCSIIIQQGDREMPGQ 256

Query: 166 -------------YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
                        +    L      L+++   N+F Q N      +   VL      QG 
Sbjct: 257 GRPSLKGDQGVPSFGLPFLKENINGLMFKVSYNAFQQVNLRQTEVLYNTVLQMAGRSQGQ 316

Query: 213 ---------------------------------------------LLELYCGNGNFSLVL 227
                                                        + +LYCG G  +L+L
Sbjct: 317 ADKDKSNQETPSGVEGTEQSSKTADKEIADDKVDDHTVVRKRIKQVWDLYCGIGTITLLL 376

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A   + V  +E    ++  A  N A N ++NVK +    ++                I  
Sbjct: 377 AGMAENVTGMEENSLAIADAAQNAAENKISNVKFIEGRVED---------------RIGE 421

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRD-------------- 331
              R   + VDPPR+G++   +  +       I+Y+SC+P ++ RD              
Sbjct: 422 QKDRPDLVVVDPPRAGMNKRVIAALLDRKPQSIIYVSCDPATMARDVGMLANGMEIPEGK 481

Query: 332 ---LSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              L  L   + +  +   D F +T  +EC V L R+
Sbjct: 482 GAGLKRLKGAYRVVEVQPVDMFGWTESVECVVKLERR 518


>gi|256784672|ref|ZP_05523103.1| RNA methyltransferase [Streptomyces lividans TK24]
 gi|289768558|ref|ZP_06527936.1| RNA methyltransferase [Streptomyces lividans TK24]
 gi|289698757|gb|EFD66186.1| RNA methyltransferase [Streptomyces lividans TK24]
          Length = 458

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 128/329 (38%), Gaps = 47/329 (14%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R +F +  DG      +   ++ E   ID+ M  +  ++ L IE      +     A
Sbjct: 163 WRTRVQFAVDADG---RAGLRRHRSHEIEPIDHCMIAAEGVSELGIERRDWPGM-----A 214

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-C 161
            +  I    SQ  Q I+T                RL      R   +  +   +      
Sbjct: 215 TVEAIAATGSQDRQVILT-----------PRPGARLPIVELDRPVSVMRVEEKDGGVHRV 263

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             R +V ER         YR     F Q +      ++  V+      +GD+ L+LYCG 
Sbjct: 264 HGRPFVRER----ADDHTYRVGSGGFWQVHPKAADTLVTAVMQGLLPRKGDMALDLYCGV 319

Query: 221 GNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           G F+  LA        VL +E  K +VE AR+N+AA   + V+I +   +          
Sbjct: 320 GLFAGALADRVGDQGAVLGIESGKRAVEDARHNLAA--FDRVRIEQGKVESVLPR----- 372

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                  ID        I +DPPR+G    TV  +       I Y++C+P +L RDL   
Sbjct: 373 -----TGID----EVDLIVLDPPRAGAGRKTVQHLSTLGARRIAYVACDPAALARDLGYF 423

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLV 363
               + +  L +FD FP T H+EC  +L 
Sbjct: 424 QDGGYRVRTLRVFDLFPMTAHVECVAILE 452


>gi|148688457|gb|EDL20404.1| RIKEN cDNA 4732479N06, isoform CRA_b [Mus musculus]
 gi|148688458|gb|EDL20405.1| RIKEN cDNA 4732479N06, isoform CRA_b [Mus musculus]
          Length = 493

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 145/428 (33%), Gaps = 90/428 (21%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-----------------------VPNLQIFRSEPIHYRM 45
            YE QL  K +  ++++ + +                       + +  I       YR 
Sbjct: 84  SYEAQLKVKFEAQKKLLQSLESHLKVLHGVSDTVAAHQSEGLRCLLHPIIPSPTTTGYRN 143

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           ++ F ++   D       Y++   +           +P + L N            E  L
Sbjct: 144 KSTFSVYRSPDGNPKTVGYYLGTWKDGN-----VVCLPCNHLKNIPEKHSQVAQYYEVFL 198

Query: 101 R-------------AKLFQIDYLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDA---- 141
           R                 ++   T++     AIVT     L ++      + L+D     
Sbjct: 199 RQSSVEPCLLFHEGGHWRELVVRTNRQGHTMAIVTFHPQGLSEEEVCVQKVTLKDFFTKG 258

Query: 142 ------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
                 L +  +Q   + R +  +      + +  +      L  R   ++F Q N    
Sbjct: 259 PGAICELTSLYFQESTMTRCSHQQSPYQLLFGEPHIFEDLLGLKIRISPDAFFQINTAGA 318

Query: 196 VHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
             ML  ++    G+  +  LL++ CG G   L LA+   +V  +E+ + +VE AR+  A 
Sbjct: 319 E-MLYRIIGELSGVNSESLLLDICCGTGVIGLSLAQRASQVHGIELVEQAVEDARWTAAF 377

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N V N +     ++     + + ++  +L              V+P R+GL    V  ++
Sbjct: 378 NGVTNCEFHAGRAETILPQLLKSQKDEKL----------TVAVVNPARAGLHYRVVRAIR 427

Query: 314 AYPHI---LYISCNP---DSLCRDL-----------SILSTTHTIERLALFDQFPYTRHM 356
               I   +++SC P    +  R+             +L     +      D FP+T H 
Sbjct: 428 NCRAIHTLVFVSCKPHGEST--RNFIELCCPPNSAKQLLGDPFVLREAVPVDLFPHTPHC 485

Query: 357 ECGVLLVR 364
           E  +L  R
Sbjct: 486 ELVLLFTR 493


>gi|21224242|ref|NP_630021.1| RNA methyltransferase [Streptomyces coelicolor A3(2)]
 gi|50401722|sp|O54099|Y5901_STRCO RecName: Full=Uncharacterized RNA methyltransferase SCO5901
 gi|2815315|emb|CAA16438.1| putative RNA methyltransferase [Streptomyces coelicolor A3(2)]
          Length = 458

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 129/329 (39%), Gaps = 47/329 (14%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R +F +  DG      +   ++ E   ID+ M  +  ++ L IE      +     A
Sbjct: 163 WRTRVQFAVDADG---RAGLRRHRSHEIEPIDHCMIAAEGVSELGIERRDWPGM-----A 214

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-C 161
            +  I    SQ  Q I+T                RL      R   +  +G  +      
Sbjct: 215 TVEAIAATGSQDRQVILT-----------PRPGARLPIVELDRPVSVMRVGEKDGGVHRV 263

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             R +V ER         YR     F Q +      ++  V+      +GD+ L+LYCG 
Sbjct: 264 HGRPFVRER----ADDRTYRVGSGGFWQVHPKAADTLVTAVMQGLLPRKGDMALDLYCGV 319

Query: 221 GNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           G F+  LA        VL +E  K +VE AR+N+AA   + V+I +   +          
Sbjct: 320 GLFAGALADRVGDQGAVLGIESGKRAVEDARHNLAA--FDRVRIEQGKVESVLPR----- 372

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                  ID        I +DPPR+G    TV  +       I Y++C+P +L RDL   
Sbjct: 373 -----TGID----EVDLIVLDPPRAGAGRKTVQHLSTLGARRIAYVACDPAALARDLGYF 423

Query: 336 S-TTHTIERLALFDQFPYTRHMECGVLLV 363
               + +  L +FD FP T H+EC  +L 
Sbjct: 424 QDGGYRVRTLRVFDLFPMTAHVECVAILE 452


>gi|123470775|ref|XP_001318591.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121901354|gb|EAY06368.1| hypothetical protein TVAG_151750 [Trichomonas vaginalis G3]
          Length = 534

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/393 (16%), Positives = 139/393 (35%), Gaps = 53/393 (13%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E+Q A K ++  +++             +     ++YR + E  +  D +    + F+  
Sbjct: 157 EEQYAAKSEKYTKLIQGIVPEGSSPVTVVPVPNTVNYRNKVEMTVGADLEGNTVVGFNLG 216

Query: 67  TKE---RMRIDYFMPGSLLIN-------ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
           +K+      ID  +    +           +    + I            I   T++  +
Sbjct: 217 SKDEDVIAPIDNCLNVPKVAPYLARKFTDFVTHAKSPIYDRSRNSGVWKFITVRTTEEGK 276

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-----------ICLDRD 165
            ++ ++ ++   +  +     +       +  +  +     TK           +     
Sbjct: 277 TMLVVVVYK--SEECQVDPDDVAQLTETFQEDVDSLYLCETTKYEGYGNDPVFTLLNGTA 334

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
            ++E+L    R L +     SF Q N      +   V + A       L+++ CG G   
Sbjct: 335 TIEEKL----RGLKFDISPMSFFQTNTPGAEILFSRVESLAEVDKSTVLIDVCCGTGVIG 390

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L +A+   +V+ ++I K ++E A+ N   N + N + +   +++    +          D
Sbjct: 391 LSMAKKAKKVIGIDIEKDAIEDAKKNATKNKIKNAEFIAAPAQDVLPGIL---------D 441

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSIL------ 335
                     + VDPPR GL       ++       ++YISCNP+SL RD          
Sbjct: 442 QCEAEGSRVVVIVDPPRDGLHKTAAKAIRECKLLKRVVYISCNPESLVRDSKKFLFAENN 501

Query: 336 ---STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              +           D FP+T  +E  +L+ R+
Sbjct: 502 NFATQPFQPVEWFGVDLFPHTDRLELVMLMQRE 534


>gi|322491461|emb|CBZ26733.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 604

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 21/214 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           Y    LT     L +     +F Q N      ML  V    +   G  LL+L  G G   
Sbjct: 358 YGAPTLTEYLAGLCFELSPTAFFQVNTPGMETMLTKVAEVAELSAGTTLLDLCSGTGTIG 417

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L L++H  RV+ +E+ + +V  AR N   N + N +      +    ++          D
Sbjct: 418 LTLSKHVKRVIGIELVESAVANARRNAQQNSITNAEFHCGRVEHLLPSVISGLPAEDRGD 477

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILST---- 337
           I         + +DPPR+G++   +  ++       ++YISC   +L RD   L+     
Sbjct: 478 I--------VVVLDPPRAGVNSTVLKWIRGMETIRRVVYISCEQKALERDCPGLTKPSTK 529

Query: 338 -----THTIERLALFDQFPYTRHMECGVLLVRKP 366
                   +     FD FP+T H+E   +L R+P
Sbjct: 530 AYRGTPFEVTAGFAFDLFPHTHHVEMVAVLTRRP 563


>gi|303277405|ref|XP_003057996.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460653|gb|EEH57947.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 484

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 106/421 (25%), Positives = 163/421 (38%), Gaps = 95/421 (22%)

Query: 33  LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF--DQQTKERMRIDYFMPGSLLINALMIEM 90
            ++F S   H+R R  F +         + +      K  + +  F      +N +M  +
Sbjct: 55  PEVFASPRSHFRSRCRFQVARAEGADGALSYRMWDGGKPSVIVSTFPMALRRVNEVMRLL 114

Query: 91  MATIR---------------LEPLLRAKLFQIDYLTSQS--DQAIVTLIYHRLLDDA-WR 132
           +  ++                + +L   L    +L ++S     +VTL+Y   +D A W 
Sbjct: 115 LGALQEGLDAAAAGGGGGAGRDDVLTTGLEAAHFLAARSARGGVLVTLVYSSPIDAARWV 174

Query: 133 ECAIRLRDALHA--------------------------RKYQIQLIGRANKTKICL---- 162
             A  LR  L +                             ++++        + L    
Sbjct: 175 PAATALRTRLASALERSSPAAADEEDESPPPLHLLSEDESARLRVNVLGRSKGVALSARV 234

Query: 163 -----------------DRDYVDERLTVAGRT-LIYRQIENSFTQPNAGINVHMLEW--- 201
                               YV E L +       Y+  E +F+ PNA +  H L W   
Sbjct: 235 VPVPGAAGDASPSPSRPGETYVVETLRLDDGDAFAYKNAEGAFSNPNAWMAEHTLTWLRS 294

Query: 202 ----VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
               + A   G    LLELYCG GN ++ LA  F RV+AVEI++   +AAR N+  N + 
Sbjct: 295 CARAIAAERGGAGASLLELYCGCGNHTVALAGMFTRVVAVEISEELCDAARDNLRRNGIE 354

Query: 258 -NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
             V IV   S   +    RE        + +    F  + VDPPR+GLD  T+ +V+ + 
Sbjct: 355 EGVSIVHAPSASVS----RELLRGGGGGLGLGLDAFDVVLVDPPRAGLDADTLALVKRFE 410

Query: 317 HILYISCNPDSLCRDLS---------------ILSTTHTIERLALFDQFPYTRHMECGVL 361
           ++LYISC+P SL RD                  LS TH + + A+FD FPYTRH E G  
Sbjct: 411 YVLYISCDPASLARDAMGGEEGNGNGKGGGTLRLSDTHDVVKFAVFDHFPYTRHAEVGAC 470

Query: 362 L 362
            
Sbjct: 471 F 471


>gi|183602485|ref|ZP_02963851.1| hypothetical RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683201|ref|YP_002469584.1| deoxyribonuclease/rho motif-related TRAM [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241191161|ref|YP_002968555.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196567|ref|YP_002970122.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218404|gb|EDT89049.1| hypothetical RNA methyltransferase [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620851|gb|ACL29008.1| deoxyribonuclease/rho motif-related TRAM [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249553|gb|ACS46493.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240251121|gb|ACS48060.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177269|gb|ADC84515.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295794154|gb|ADG33689.1| RNA methyltransferase [Bifidobacterium animalis subsp. lactis V9]
          Length = 436

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 142/385 (36%), Gaps = 60/385 (15%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEP------IHYRMRAEFHIWHDG 55
           L+    E Q   K   L+ +M      +L    ++          +H+R R E     +G
Sbjct: 87  LIHVSLEGQERWKEATLKDVMKRLGHVDLDDVPVYAMPGDEQAHGLHWRTRIEMVTDDEG 146

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                 M  + T  R+ ID     +  +  +           P                +
Sbjct: 147 RPS---MRRRGTHVRVPIDTMPLATRAVLEVAEMNGVWDGNLP---------------EN 188

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             I   +    +D         LR A+  R Y I + G     K+      + E + V G
Sbjct: 189 AQIRIAVPEPRVDAEQIADPEALRKAI-GRNYAIMVDG-----KVRHGSRALKETIMVDG 242

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----------LLELYCGNGNFSL 225
           +   Y      F Q +    + + ++V+   +   GD          + +LY G+G F+L
Sbjct: 243 KPFEYTVDAGGFWQMHREAPMVLPQYVIDQIRETPGDRAPRNGRNLVIWDLYSGSGLFTL 302

Query: 226 VLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            LA       +++++E AK +V  AR N+    ++ V+ +                    
Sbjct: 303 PLATLLDDRAKLVSIEGAKDAVANARRNLRNAGIHTVQALCGDVLHTLD----------- 351

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-TH 339
           KDID        + +DPPR+G        +     P ++YI+C+P SL RD + L+   +
Sbjct: 352 KDIDPQRAHPDIVVLDPPRAGAKAKVCHKIANSGAPIVVYIACDPASLARDTATLTEHGY 411

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I  +A FD +P T H+E   + V+
Sbjct: 412 RIHSIAAFDIYPQTHHVETVAVFVK 436


>gi|255730431|ref|XP_002550140.1| endo-exonuclease NUCR [Candida tropicalis MYA-3404]
 gi|240132097|gb|EER31655.1| endo-exonuclease NUCR [Candida tropicalis MYA-3404]
          Length = 577

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 149/397 (37%), Gaps = 50/397 (12%)

Query: 2   SGTLLID-QYEQQLAEKVDRLR--------QMMLAFQVPNLQIFRSEP--IHYRMRAEFH 50
           SG    +  YE+QL  K   +          ++   ++PN+   +  P   +YR +   H
Sbjct: 197 SGCQFQNVDYEEQLIIKKQTIENAYKFFAPNLLTEGKLPNISETQRSPTIYNYRTKLTPH 256

Query: 51  I----WHDGDD-----LYHIMFDQQTKERMRIDYFMPGSLL-INALMIEMMATIRLEPLL 100
                   G D        I    +   R  +D    G+ + I    I  +   +     
Sbjct: 257 FVLANRKTGKDLPCPPNLGISAKGRPTWRKNVDSGPDGTNVDIEECAIATLTINQGLDNE 316

Query: 101 RAKLF-QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           R +   + +  T  +   +         D    E +      +   +  ++   +  KT 
Sbjct: 317 RKRFHKEYEKYTKIATFLLREDTKVLNKDTVIGEASRDENGDVSTLEVTLEDDTKLVKTC 376

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLEL 216
           +   R  V E +        +      F Q N  I   ++ +V +  K    +   L++ 
Sbjct: 377 VTNPRQIVQEYI----DGYTFEFTSGEFFQNNNSILPIIINYVKSNLKLSDTEPNYLVDA 432

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           YCG+G FS+  +    +V+ VEI+  S++ A+ N   N+++N K +   ++E   ++   
Sbjct: 433 YCGSGLFSITCSSKVSKVIGVEISAESIKFAKINAIKNNISNAKFIVGKAEEIFASIDTP 492

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSI 334
            +               ++ +DPPR G DD  +  +  Y    I+YISCN  S  RD+  
Sbjct: 493 ND-------------QTSVILDPPRKGCDDVFLNQLSDYNPAKIVYISCNVHSQARDIEW 539

Query: 335 L------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
                     + +E +  FD FP T H+E   +L  K
Sbjct: 540 FINNTGNGHKYQVESIKGFDFFPQTHHVESVAVLTLK 576


>gi|282851389|ref|ZP_06260754.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|282557357|gb|EFB62954.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
          Length = 226

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 19/228 (8%)

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                        NKT   L + ++ E +        ++    +F Q N      +    
Sbjct: 11  QNETQWQNPQVWGNKTIKLLGKSHIIEEMLGK----KFKLSPRAFFQLNPEQTSTLYSEA 66

Query: 203 LAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L          L++ Y G G   ++ +    +V+ +E    +V  A+ N   NHV N + 
Sbjct: 67  LKYLDLTPDQTLIDAYAGVGTLGILASDQVRQVIGIESIPEAVIDAQENCHLNHVRNAEY 126

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--IL 319
           ++ + ++             L ++         + VDPPR+GL    +  +        +
Sbjct: 127 IQGNVEKL------------LPELKNQGVPIDALIVDPPRTGLSKKLIKTLLEVKPETFV 174

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           Y+SCNP +L +DL +LS  + +  +   D  P T   E    LV + +
Sbjct: 175 YVSCNPATLAKDLVLLSEAYDVRVIQPVDMMPQTPRWEGVTKLVLRKN 222


>gi|91088207|ref|XP_973242.1| PREDICTED: similar to CG3808 CG3808-PA [Tribolium castaneum]
 gi|270011827|gb|EFA08275.1| hypothetical protein TcasGA2_TC005909 [Tribolium castaneum]
          Length = 586

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/423 (15%), Positives = 138/423 (32%), Gaps = 83/423 (19%)

Query: 9   QYEQQLAEKVDRLRQMML----------------------AFQVPNLQI----FRSEPIH 42
            YE+QL  K +  R ++                        F     ++    +  E   
Sbjct: 168 PYEEQLKTKQEEARNILKRLGNELARQNPDLREWLNKQKEKFDGLPCELLNIRYADECDG 227

Query: 43  YRMRAEFHIWHDGD------DLYHIMFDQQTKERMRID---YFMPGSLLINALMIEMMAT 93
           YR +  F +  D +            +         I+   +      L   L  + +  
Sbjct: 228 YRNKCSFTVGIDEETKLPTVGFRIGSYVNGITGVGSIESLKHIPESMKLAVKLFQDYVRA 287

Query: 94  IRLE----PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI------------- 136
             L+     +      Q+   T+Q    +V  I+ + L +   +                
Sbjct: 288 SDLQVFNFEVHTGHFRQLTIRTAQDQIMLVVGIHPQDLSEEKLKVFKNSLIHYFTEGAGK 347

Query: 137 --RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
             ++    + +  +      ++ ++      ++ E L      L ++    +F Q N   
Sbjct: 348 EAKITSLYYQKIVKKIAGEDSDGSEHLWGDTHICETLL----GLKFKISPEAFFQINTKG 403

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
              + + ++      +   +L++ CG G   L  A++  +VL +EI   ++  A+ N   
Sbjct: 404 AEILYKSIIELASPTEDSTVLDVCCGTGTIGLCFAKNCKKVLGIEIVPQAIIDAKANAKL 463

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + N +     ++E             L  +   +       VDPPR+GL    V  ++
Sbjct: 464 NEIENSEFFEGKAEEI------------LGSVCYRAMGDVVAVVDPPRAGLQQKAVVQIR 511

Query: 314 AYPHI---LYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVL 361
               I   +Y+SCNP +  ++   +                R  + D FP+TRH E  + 
Sbjct: 512 KINKIGQLVYVSCNPAAALKNFIDIGRPASKTLHNEPLVPVRAVVVDMFPHTRHCELIIS 571

Query: 362 LVR 364
             R
Sbjct: 572 FKR 574


>gi|1723813|sp|P55136|RUMA_PHOAS RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumA; AltName:
           Full=23S rRNA(M-5-U1939)-methyltransferase
 gi|537618|gb|AAA62209.1| unknown [Vibrio sp.]
          Length = 220

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 22/226 (9%)

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TK 207
           + L   +++    L      E+       +        F Q N  +NV M+E  +     
Sbjct: 8   LFLAPSSDELDHVLG-----EQPYYDIDDVRLTFSPKDFIQVNRDVNVKMVEQAINWLDI 62

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             Q  +L+L+CG GNFSL LAR    V+ VE     V  A  N AAN ++N    + +  
Sbjct: 63  QPQDRVLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVARATANAAANGLDNATFYQANLD 122

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPD 326
           E    +   +E            +F  I +DP R+G       +V   P  ++Y+SCNP 
Sbjct: 123 EDVTKLVWAQE------------QFDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPA 170

Query: 327 SLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSGWHQ 371
           +L RD   +L   + + RL + D FP+T H+E   L V+  +  H+
Sbjct: 171 TLARDSQMLLQQGYKLARLGMMDMFPHTGHLESMTLFVK--TNHHK 214


>gi|190150439|ref|YP_001968964.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307263783|ref|ZP_07545389.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915570|gb|ACE61822.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870904|gb|EFN02642.1| 23S rRNA (uracil-5-)-methyltransferase rumB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 391

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 134/395 (33%), Gaps = 48/395 (12%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGD 56
           +S   L   Y  QL +K   L++++  F + N    L   +S    +R +A+  +    +
Sbjct: 14  VSCQWLEKPYATQLTDKEIDLKRLISPFILQNFTEILPPVQSSQKQFRNKAKMVVSGSVE 73

Query: 57  DLYHIMFDQQTKERMRIDYF-------------MPGSLLINALMIEMMATIRLEPLLRAK 103
                +   QT  +  ID                     I    +      + +  L+  
Sbjct: 74  RPILGILKDQTDPQSGIDLCDCPLYPTEFEALFPILKDFIARAGLVPYNIAKKKGELKYI 133

Query: 104 LFQIDYLTSQSDQAIVTLI-YHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTK 159
           L              V      R L +      +            IQ    A    +T+
Sbjct: 134 LLTQSRYNQSIMLRFVLKSEQKRPLVERELPNLLAKLPKDSVVSLNIQPQHAAILEGETE 193

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
           I L      E        +        F Q N  +   +        K +      +L+C
Sbjct: 194 IFLTEKTTIEE---NFNDIPLFIRPQGFFQTNPNVASQLYATAQNWIKDLAIQQFWDLFC 250

Query: 219 GNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           G G F L  A+          + ++EI+  ++ +A  +     + N+    + S +F   
Sbjct: 251 GVGGFGLHCAKALQEKNENVQLTSIEISASAIASATKSAEQLQLKNITFASLDSAQFA-- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                       ++  S     + V+PPR G+       +     P+++Y SCN  ++ +
Sbjct: 309 ------------LNEKSATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNARTMAQ 356

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   LS  ++++++ LFD FP+T H E    LV+K
Sbjct: 357 DFEALSN-YSLQKVQLFDMFPHTSHYEVLTFLVKK 390


>gi|316973227|gb|EFV56847.1| putative HpaII tinys locus 9c protein [Trichinella spiralis]
          Length = 490

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 146/391 (37%), Gaps = 61/391 (15%)

Query: 9   QYEQQLAEKVDRL------------RQMMLAFQVP----NLQIFRSEPI--HYRMRAEFH 50
            YE+QL  K +              ++  L FQ       L+  R+ P+  +YR + EF 
Sbjct: 120 PYEEQLKNKQNACYEWAKKCSIKIYKECGLPFQGKLHYGELENIRASPVQNYYRNKCEFT 179

Query: 51  IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
           I ++G       F             + G + I   M  +M  +    +    + + +  
Sbjct: 180 IGYNGTAPEVG-FRLSRHRDGCTVQPVDGCVHIPTTMKLLMDLMLTVTVNPVDVDEAEIN 238

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--ICLDRDYVD 168
           + + +      I  R L        +       +  Y  +LI   +K +  +     +V 
Sbjct: 239 SIKGE------IVKRFLYQDMDNYRV-------SSVYFQRLINAGDKVEYELLGGCPHVY 285

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSL 225
           E +      + +R    SF Q N      + + +      +Q D   LL++ CG G   +
Sbjct: 286 ETI----DNMHFRISPYSFFQVNTAGCEVLYKTLFELCASVQVDHSLLLDICCGTGTIGI 341

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LAR F++V+ +E  +P+V+ A +N+  N   N        +E    +        LK+ 
Sbjct: 342 YLARLFEKVIGIESVEPAVKDACHNMIVNEQFNCDFQAGKVEELLPKL--------LKES 393

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILST----- 337
           ++  ++     +DPPR G+    +  ++ +  I    Y+SC+  +  ++   L       
Sbjct: 394 NVEKWKTCVAVLDPPRGGVSGRVIAALRCHEPIHHLFYVSCDVQAAEKNFVDLCKRASKR 453

Query: 338 ----THTIERLALFDQFPYTRHMECGVLLVR 364
                  + R+   D FP+T+  E  +   R
Sbjct: 454 YPGPPFRLLRMIPVDMFPHTKLFELVLHFQR 484


>gi|238496117|ref|XP_002379294.1| tRNA(m5U54)methyltransferase [Aspergillus flavus NRRL3357]
 gi|317147368|ref|XP_001822093.2| tRNA(m5U54)methyltransferase [Aspergillus oryzae RIB40]
 gi|220694174|gb|EED50518.1| tRNA(m5U54)methyltransferase [Aspergillus flavus NRRL3357]
          Length = 530

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/398 (18%), Positives = 139/398 (34%), Gaps = 53/398 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-------FRSE-PIHYRMRAEFHIWH 53
              L +  YE QLA K   + +    F     ++       F S     YR +   H   
Sbjct: 148 GCQLQMMSYEDQLAHKKRIVEKAYANFSGLIPELIPAIDDTFPSPLQYGYRTKLTPHFAG 207

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
            G +       Q   E   I + M        +    + T  +   L+++  ++     +
Sbjct: 208 PGGNRRSKAPKQPHTEVPPIGFTMKNQRRDLDIEDCPLGTDIVRKGLKSERTRVAENIGK 267

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-YVDERLT 172
             +    L     L ++         D   A K +   +G  +   I ++R+ Y +E+  
Sbjct: 268 YKKGATIL-----LRESTARIPKDDVDPGSAVKDREIEVGEDSGDVIHIEREKYTEEKRC 322

Query: 173 V---------AGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD----LLE 215
           V               +     +F Q N  I      ++ +  L             LL+
Sbjct: 323 VTDPNGTSVEYIDDYFFSNRAGAFFQNNNSILSGFTEYIRQLALPKHTQQDSKPIKYLLD 382

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            Y G+G F++ L+  F   L V+++  S+ +AR N  AN + N       +    + +  
Sbjct: 383 AYSGSGLFTITLSPLFKSSLGVDVSGDSIVSARENARANSLPNTGFAAADAATLFKDVPY 442

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
             +                + +DPPR G  D  +  +       ++Y+SCN  +  RD++
Sbjct: 443 PPD-------------QTLLVIDPPRKGCSDDFLRQLLTFGPRRVVYVSCNVHTQARDVA 489

Query: 334 ILSTT-------HTIERLALFDQFPYTRHMECGVLLVR 364
           ++            IE +  FD FP T H+E   +L +
Sbjct: 490 VMVQGDKEKNIRFEIESIRGFDFFPQTGHVEGVAILNK 527


>gi|83769956|dbj|BAE60091.1| unnamed protein product [Aspergillus oryzae]
          Length = 577

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/398 (18%), Positives = 139/398 (34%), Gaps = 53/398 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-------FRSE-PIHYRMRAEFHIWH 53
              L +  YE QLA K   + +    F     ++       F S     YR +   H   
Sbjct: 195 GCQLQMMSYEDQLAHKKRIVEKAYANFSGLIPELIPAIDDTFPSPLQYGYRTKLTPHFAG 254

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
            G +       Q   E   I + M        +    + T  +   L+++  ++     +
Sbjct: 255 PGGNRRSKAPKQPHTEVPPIGFTMKNQRRDLDIEDCPLGTDIVRKGLKSERTRVAENIGK 314

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-YVDERLT 172
             +    L     L ++         D   A K +   +G  +   I ++R+ Y +E+  
Sbjct: 315 YKKGATIL-----LRESTARIPKDDVDPGSAVKDREIEVGEDSGDVIHIEREKYTEEKRC 369

Query: 173 V---------AGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD----LLE 215
           V               +     +F Q N  I      ++ +  L             LL+
Sbjct: 370 VTDPNGTSVEYIDDYFFSNRAGAFFQNNNSILSGFTEYIRQLALPKHTQQDSKPIKYLLD 429

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            Y G+G F++ L+  F   L V+++  S+ +AR N  AN + N       +    + +  
Sbjct: 430 AYSGSGLFTITLSPLFKSSLGVDVSGDSIVSARENARANSLPNTGFAAADAATLFKDVPY 489

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLS 333
             +                + +DPPR G  D  +  +       ++Y+SCN  +  RD++
Sbjct: 490 PPD-------------QTLLVIDPPRKGCSDDFLRQLLTFGPRRVVYVSCNVHTQARDVA 536

Query: 334 ILSTT-------HTIERLALFDQFPYTRHMECGVLLVR 364
           ++            IE +  FD FP T H+E   +L +
Sbjct: 537 VMVQGDKEKNIRFEIESIRGFDFFPQTGHVEGVAILNK 574


>gi|163847509|ref|YP_001635553.1| (Uracil-5)-methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222525358|ref|YP_002569829.1| (Uracil-5)-methyltransferase [Chloroflexus sp. Y-400-fl]
 gi|163668798|gb|ABY35164.1| (Uracil-5)-methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222449237|gb|ACM53503.1| (Uracil-5)-methyltransferase [Chloroflexus sp. Y-400-fl]
          Length = 399

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 138/385 (35%), Gaps = 43/385 (11%)

Query: 2   SGTLLIDQ-YEQQLAEKVDRLRQMML--AFQVPNLQIFRSE-PIHYRMRA-------EFH 50
            G    D+ Y  Q+A K   LR +          L++  S  P  YR R         F 
Sbjct: 34  GGCAFQDRTYADQVAAKTTILRMLYAEGGIDASALEVVASPDPFAYRTRMDYVATKGRFG 93

Query: 51  IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-LRAK---LFQ 106
           +   G   Y I       E        P +      +      + L    +R     L  
Sbjct: 94  LRARGKFNYII-------ELTTCHLIPPTAFAAAQAVWRHALDLGLPDYDVRTHTGFLRY 146

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--- 163
           +    S  D+ ++  +     ++A          A         L+  +  T +      
Sbjct: 147 VVVRRSPDDELLLAAVTAGGGEEAVMADLAATALAQPGVVGFHWLVNDS-LTDVSFGEVC 205

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGN 222
           R +  +RL +           N+F Q N  +   ++   +AA        + +LY G G 
Sbjct: 206 RYWGADRLAMRVGHFTCFIGPNTFFQNNIHLTERLINDAVAAAAPDATMRVADLYGGVGV 265

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L LA+   RV  VE    SV+ A  N   N V+N+  +       T    RE+    L
Sbjct: 266 IGLHLAQSAARVDCVESVAESVQLAHQNALMNKVSNIHPICAD----TLTYLREQPTGSL 321

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHT 340
                       + VDPPR+GL       +++  P  I+Y+SCNP +   DL  L + + 
Sbjct: 322 P----------VVVVDPPRTGLGLPVCQELIRIAPQRIVYVSCNPLTQVSDLQHLQSAYR 371

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           I  L  +D FP+T H+E   +L R+
Sbjct: 372 IVGLRGYDMFPHTPHVEVMAVLERR 396


>gi|311276624|ref|XP_003135289.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Sus scrofa]
          Length = 657

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 144/422 (34%), Gaps = 78/422 (18%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++             P  +        I  S  I  YR 
Sbjct: 248 SYEEQLKVKFEAQKKILQRLESYLQMLNGVSVTTAAPRSEGLCCCLHPIIPSPVIDGYRN 307

Query: 46  RAEFHI-WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR--- 101
           ++ F +      +   + +   T     I   +  + L N            E  LR   
Sbjct: 308 KSTFSVNRGPDGNPKTVGYYLGTWRDRNI-VCVQSNHLKNIPEKHNQVAQYYEIFLRQSP 366

Query: 102 ----------AKLFQIDYLTSQSDQAIVTLIYHRLL--DDAWRECAIRLRDA-------- 141
                         ++   T+     +  + +H      +        +++         
Sbjct: 367 MEPCLLFHEGGHWRELIVRTNSQGHTMAIITFHPQELRQEELCVQKETVKEFFTKGPGAV 426

Query: 142 --LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             L +  +Q   + R +  +      + +  +      L  R   ++F Q N      ML
Sbjct: 427 CDLTSLYFQESTMTRCSHQQSPYQLLFGEPHIFEDLLGLKIRISPDAFFQINTAGAE-ML 485

Query: 200 EWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +    G+  D  LL++ CG G   L LA++  +VL +E+ + +VE AR+  A N + 
Sbjct: 486 YRTVGELSGVNSDTILLDICCGTGVIGLSLAQYTSQVLGIELVEQAVEDARWTAAFNGIT 545

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           N +     +++    + + +E            +F    V+P R+GL    V  ++    
Sbjct: 546 NCEFHTGRAEKILPQLLKSKE----------DGQFIVAVVNPARAGLHYQVVQAIRNCRA 595

Query: 318 I---LYISCNPDS-LCRDL-----------SILSTTHTIERLALFDQFPYTRHMECGVLL 362
           I   +++SC P     R++            +L     + +    D FP+T H E  +L 
Sbjct: 596 IRTLVFVSCKPHGETTRNIIELCCPSNSAKKLLGEPFVLRQAVPVDLFPHTPHCELVLLF 655

Query: 363 VR 364
            R
Sbjct: 656 TR 657


>gi|182412677|ref|YP_001817743.1| RNA methyltransferase [Opitutus terrae PB90-1]
 gi|177839891|gb|ACB74143.1| RNA methyltransferase, TrmA family [Opitutus terrae PB90-1]
          Length = 493

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 141/398 (35%), Gaps = 57/398 (14%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSE-PIHYRMRAEFHIWHDGD 56
            G       Y +QLA K  ++ +++            +  S     YR +   H      
Sbjct: 115 GGCQYQHLAYAEQLAWKRRQVAELLQHLGGVEFAVSPVIPSPREYGYRSKITPHF----A 170

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                            +  +P ++       E  A+    P      + I +L   +  
Sbjct: 171 APKAARTIAAGSTPAAQESSVPAAVSTPDGPGEARASSAAVPD-----WPIGFLRQGTRF 225

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQ----IQLIGRANKTKICLDRDYV-DERL 171
            I+ +    +  DA       +R  L  ++ +      L+ R    ++  D D V  E +
Sbjct: 226 DIIDVPRCPIATDAINTRLAEVRAELRTQRDRYTRGATLLLRDAGGRVTTDYDAVVTEEI 285

Query: 172 TVAGRT---------------------LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
            V G                       L    +   F Q N  I      +V        
Sbjct: 286 GVVGLDDAGAEKPGLTSPAPSNRAGAPLRLHFLARDFFQNNPFILPAFTSYVREQAAASG 345

Query: 211 GD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG+G F+L  A  F+RV  VEI++ SV  AR N AAN + N   +   +   
Sbjct: 346 ARFLVDAYCGSGLFALASASAFERVAGVEISESSVRFARENAAANGITNASFLAADAAAI 405

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDS 327
              +                     + +DPPR G D   +  + A+ P  ++Y+SC+P +
Sbjct: 406 FAGL-------------AFPAAESVVVIDPPRKGCDREFLQQLFAFGPRAVVYVSCDPAT 452

Query: 328 LCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             RDL   L+  + +  +  FD FP TRH+EC + L R
Sbjct: 453 QMRDLRDFLAAGYELIAVQPFDLFPQTRHLECVITLRR 490


>gi|156743278|ref|YP_001433407.1| (Uracil-5)-methyltransferase [Roseiflexus castenholzii DSM 13941]
 gi|156234606|gb|ABU59389.1| (Uracil-5)-methyltransferase [Roseiflexus castenholzii DSM 13941]
          Length = 405

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 140/383 (36%), Gaps = 38/383 (9%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQM----MLAFQVPNLQIFRSE-PIHYRMRAEFHIWHD- 54
            G +  D  Y  Q+A K   L  +    +    +  L +  S  P  YR R +F    + 
Sbjct: 36  GGCVFQDHDYPAQVAAKRAALCSLWSDDLPDNCIDTLDVVASPNPFAYRTRMDFVASKER 95

Query: 55  -----GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
                G    +I+   +    +    F      +    + +             L  +  
Sbjct: 96  FGLRRGGRFNYIIDLHECH-LIPTHAFTAA-RAVYEHAMALGLPDYNLKTHAGFLRYVVV 153

Query: 110 LTSQSDQAIVTLIYHRLLDD---AWRECAIRLRDALHARKYQIQLIGRANKTKICLD--- 163
             S  D+ ++ L+     ++   A +   + L    H     +  +  A +T +      
Sbjct: 154 RRSPDDELLLALVTAAPEEEKVSAEKVERVALAALEHPGVLGVHWLINATRTDVSFGEPV 213

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT--KGIQGDLLELYCGNG 221
           R +    L +           N+F Q N  + + +LE V  A    G  G + +LY G G
Sbjct: 214 RHWGRATLPMRVGAHTLEIGPNTFFQNNVWLLMPLLEAVRDAVAACGHAGAIADLYSGVG 273

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +L +ARH DR++ +E +  SV  AR N       ++ ++     +  +A         
Sbjct: 274 AIALHIARHADRIVCIESSGESVRLARENSVRAGFEHIAVIEADVADALRAQ-------- 325

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTH 339
                  +  F  +  DPPR+GL       +       I+Y+SCNP +   D+  L + +
Sbjct: 326 ------TTGAFDVVVADPPRTGLGPEVCRELLRLRPRRIVYVSCNPLTQRDDIRALQSGY 379

Query: 340 TIERLALFDQFPYTRHMECGVLL 362
            +  L  +D FP T H+E   +L
Sbjct: 380 RLVLLQGYDMFPQTPHLEALAVL 402


>gi|46138691|ref|XP_391036.1| hypothetical protein FG10860.1 [Gibberella zeae PH-1]
          Length = 540

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 70/390 (17%), Positives = 133/390 (34%), Gaps = 45/390 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEPIHYRMRAEFHIWHDG 55
                +  Y +QL  K   + +    F   +  I          P+ Y  R +     DG
Sbjct: 168 GCQFQMLDYSEQLKLKKRIVEKAFKNFSNLDPNIVPAVQDTMGSPLQYSYRTKLTPHFDG 227

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLI--NALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
              +     +    R+  +       +      ++++         +R  + + +    Q
Sbjct: 228 PPGFRPS-KRGKNPRIPFEKCPDIGFMQKGRRKVLDIEDCPIGTSAVRLGMTR-ERERMQ 285

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---R 170
            +          LL +  +  A    +A    +     +   +   I   +  + +    
Sbjct: 286 KEFGNYQRGATILLRENTQRVAKDSEEASSQTQPYTTRVENEDTVDI---KSCITDSKAT 342

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNFS 224
            T       +     SF Q N  I      +V        G       L++ Y G+G F+
Sbjct: 343 TTEYIGPYTFTNPAGSFFQNNNSILPSFTGYVCDNILPPAGTGMDIKYLIDAYSGSGLFT 402

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRREREFNRL 282
           + LA  F   + ++IA  S+  A  N   N +  +  K +   + E  +++   R+    
Sbjct: 403 VTLASLFQHSIGIDIAADSIAYASRNATLNGMGEDRCKFIAADAGELFKSVTYNRD---- 458

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTT-- 338
                       + +DPPR G D   +  ++ +    +LY+SCN  +  RD+ +L     
Sbjct: 459 ---------ETVVVLDPPRKGCDADFLNQLRKFGPRRVLYVSCNVHTQARDVGVLVRGEG 509

Query: 339 ----HTIERLALFDQFPYTRHMECGVLLVR 364
               + IE L  FD FP T H+E   +L R
Sbjct: 510 EGERYEIESLRGFDFFPQTGHVEGVAILNR 539


>gi|162447304|ref|YP_001620436.1| tRNA (uracil-5-)-methyltransferase, SAM dependent [Acholeplasma
           laidlawii PG-8A]
 gi|161985411|gb|ABX81060.1| tRNA (uracil-5-)-methyltransferase, SAM dependent [Acholeplasma
           laidlawii PG-8A]
          Length = 430

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 139/354 (39%), Gaps = 28/354 (7%)

Query: 18  VDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
               ++ +      +++    I   + ++YR +   H+ H G  L    +++ +     I
Sbjct: 99  QKITKETIKKITNLDVEVEDTITDGKKLNYRNKITLHVKHIGGSLKIGTYEENSNYLEPI 158

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +       +IN  +  +   ++   L    +      T+  D  ++  I  +L  +    
Sbjct: 159 ETHHLALPVINDKITVLNKWLKTFKLETNDIKNFTLRTNGKDVMLIIGI--KLKFEGTES 216

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               L+    +    I+     N +   +   Y  E L +    L +     SF Q N  
Sbjct: 217 IIDELKKHFESIYLNIEKRSFENLSDESI-HVYGLETLKMTFNHLSFEIGPESFFQVNKD 275

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           + + M + +   T+     +++ Y G  +    +     +V A+E    S+  A+  +  
Sbjct: 276 VAILMYDEIKKLTQN--HTVIDAYAGMASIGQYI--DAKKVYAIESNLDSIIQAKKILKV 331

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N V++V+++    +E  +A  +                   I  DPPRSGL ++ + +V+
Sbjct: 332 NQVDHVELIHGQVEEKLEAYIK---------------HADAIVFDPPRSGLTESIIELVK 376

Query: 314 AY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
                 I+Y+SC+  SL RD++ L   + I+++     FP T HME   LL  K
Sbjct: 377 LNQIKTIVYVSCDLKSLARDINGLKDLYDIKKIIPVRMFPSTIHMETITLLSLK 430


>gi|322515717|ref|ZP_08068685.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus ureae
           ATCC 25976]
 gi|322118207|gb|EFX90509.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus ureae
           ATCC 25976]
          Length = 391

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 145/395 (36%), Gaps = 48/395 (12%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
           +S   L   Y  QL  K   L++++  F        L   +S    +R +A+  +    +
Sbjct: 14  VSCQWLEKPYSTQLINKEADLKRLISPFILQKFTEILPPVQSSQKQFRNKAKMVVSGSVE 73

Query: 57  DLYHIMFDQQTKERMRIDYF-----MPGSLLINALMIEMMATIRLEPLL----RAKLFQI 107
                +   QT  +  ID             +  ++ + +A   L P      + +L  I
Sbjct: 74  HPILGILKDQTDPQSGIDLCDCPLYPTEFEALFPILKDFIARAGLVPYNISKKKGELKYI 133

Query: 108 DYLTSQSDQAIVTLIYHR------LLDDAWRECAIRL-RDALHARKYQIQLIGR-ANKTK 159
               SQ +Q+++     R      L++        +L +D++ +   Q Q       +T+
Sbjct: 134 LLTQSQYNQSVMLRFVLRSEQKRPLVERELPNLLAKLPKDSMVSLNIQPQHAAILEGETE 193

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYC 218
           I L      E        +        F Q N  +   +        K +      +L+C
Sbjct: 194 IFLTEKTTIEE---NFNGIPLFIRPQGFFQTNPNVASQLYATAQNWIKELPIQQFWDLFC 250

Query: 219 GNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           G G F L  A+          +  +EI+  ++ +A  +     + N+    + S +F   
Sbjct: 251 GVGGFGLHCAKALQEKNENVQLTGIEISASAIASATKSAEQLQLKNITFASLDSAQFA-- 308

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCR 330
                       ++        + V+PPR G+       +     P+++Y SCN  ++ +
Sbjct: 309 ------------LNEKGATPDLVIVNPPRRGIGKPLAEFLNQLGTPYLIYSSCNAQTMAK 356

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D   LS  ++++++ L D FP+T H E    L++K
Sbjct: 357 DFEALSN-YSLQKVQLLDMFPHTSHYEVLTFLIKK 390


>gi|302899107|ref|XP_003047981.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256728913|gb|EEU42268.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 547

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 136/404 (33%), Gaps = 73/404 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEPIHYRMRAE------- 48
                +  Y +QL  K   L +    F   +  I          P+ Y  R +       
Sbjct: 171 GCQFQMLDYAEQLRLKRRVLEKAYQNFSNLDPAIVPTVQDTMGSPLQYGYRTKLTPHFDG 230

Query: 49  ---FHIWHDGDDLYH--------IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
              F     G +               +  ++ + I+    G+  +   M      +   
Sbjct: 231 PPGFRPSKRGKNPRVPFESCPDIGFMQKGRRKVLDIEDCPIGTSAVRLGMARERERM--- 287

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN- 156
                   Q ++   +    ++     + L     + +  +   L     ++      + 
Sbjct: 288 --------QTEFKDYKRGATLLLRENTQRL----PKDSQDIPSELPPHTVRVDNEDTVDI 335

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---- 212
           K+ I   +    E +        +     SF Q N  I      +V        G     
Sbjct: 336 KSCITDSKATTTEYIG----PYTFTNPAGSFFQNNNSILPSFTTYVRDRILPPAGSGMEI 391

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKE 268
             L++ Y G+G F++ L+  F   + ++IA  S+  A  N A N +  +  K +   + E
Sbjct: 392 KYLIDAYSGSGLFTITLSSLFQHSIGIDIAADSIAYASRNAALNGLNEDRCKFIAADAGE 451

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPD 326
             +++   R+                + +DPPR G D   +G ++ +    +LY+SCN  
Sbjct: 452 LFKSVTYNRD-------------ETVVVLDPPRKGCDADFLGQLRKFGPRRVLYVSCNVH 498

Query: 327 SLCRDLSILSTT------HTIERLALFDQFPYTRHMECGVLLVR 364
           +  RD+ +L         + IE L  FD FP T H+E   +L R
Sbjct: 499 TQARDVGVLVRGEGEGERYEIESLRGFDFFPQTGHVEGVAILNR 542


>gi|297572301|ref|YP_003698075.1| (uracil-5)-methyltransferase [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932648|gb|ADH93456.1| (Uracil-5)-methyltransferase [Arcanobacterium haemolyticum DSM
           20595]
          Length = 395

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 140/379 (36%), Gaps = 38/379 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
           S T +   Y +Q+A+KV R R+++        + F SE   YR + +  +    +     
Sbjct: 39  SCTDITVPYPEQVAKKVARARELIP--ARVWEEPFISEIEGYRNKVKLVVTGTANQPKLG 96

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQIDYLTSQSD 115
           +        + +      S  I   +  +   I         P       +   +T   D
Sbjct: 97  ILGAG--GGVDLRDCPLPSTGIRGAIPSIARFITACGLDPYSPATDHGTLKYVIITESFD 154

Query: 116 QAIVTLIYHRLLDDAWRECAIR---LRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
             ++     R           R   LR+  + R   + +           +   + +   
Sbjct: 155 GELMVRFVARRRGVQGILFKRRAELLREVPNIRVVSLNVQPERKAIIEGEEEILITDHGV 214

Query: 173 VAGR---TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
           +  R    L       SF Q       H+        + +     +LYCG G F++ LA+
Sbjct: 215 LPMRLGGELTLNVRPQSFFQTQTECAAHLYTTAAEWLENVDS-AWDLYCGVGGFAMALAQ 273

Query: 230 --HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
             +  +V+ VE+++ +VEAAR   AA  +  V  V     E+      ER          
Sbjct: 274 LGNASKVIGVEVSEQAVEAARV--AARDLPGVAFVAADVSEWIAEQGEER---------- 321

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
                  + V+PPR G+       +      ++LY SCN ++L RD++ +   + +ER  
Sbjct: 322 ----PGAVVVNPPRRGISPELCAWLNESGPDYVLYSSCNAETLARDVAAMPA-YRVERAQ 376

Query: 346 LFDQFPYTRHMECGVLLVR 364
           + D FP+T+H E  VLL R
Sbjct: 377 VVDMFPHTKHFETLVLLKR 395


>gi|291408091|ref|XP_002720420.1| PREDICTED: TRM2 tRNA methyltransferase 2 homolog B isoform 1
           [Oryctolagus cuniculus]
          Length = 503

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/427 (18%), Positives = 148/427 (34%), Gaps = 89/427 (20%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-------------------QVPNLQIFRSEPIHYRMR 46
            YE+QL  K     ++ Q + ++                    + +  I       YR +
Sbjct: 95  SYEEQLKVKFEAQKKILQRLESYLQMLQRVKVTAAATSKELCCLLHPIIPSPVINGYRNK 154

Query: 47  AEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRLE 97
           + F +    D       Y++   +       +   +         +       +    LE
Sbjct: 155 STFSVNRGPDGNPKTVGYYLGTWRDGNVVCVQSSHLKNIPEKHNQVAQYYEVFLRQSPLE 214

Query: 98  PLL----RAKLFQIDYLTSQSDQAIVTLIYHRLL---------DDAWRECAIRLRDA--- 141
           P L         ++   T+     +  + +H             +A +E  +R   A   
Sbjct: 215 PCLLFHEGGHWRELTVRTNHQGHTMAIVTFHPQELSQEELCVQKEAIKEFFLRGPGAVCD 274

Query: 142 LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           L +  +Q   + R +  +    +     Y+ E L      L  R   ++F Q N      
Sbjct: 275 LTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEGLL----GLKIRISPDAFFQVNTAGAE- 329

Query: 198 MLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           ML   +    G+  +  LL++ CG G   L LA+H  +VL +E+ + +VE AR+  A N 
Sbjct: 330 MLYQTVGELSGVNANTILLDICCGTGAIGLSLAQHASQVLGIELVEQAVEDARWTAAFNG 389

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N +     +++    + + +E            +     V+PPR+GL    V  ++  
Sbjct: 390 ITNCEFHAGRAEKILPWLLKSKE----------GVQPVVAVVNPPRAGLHHRVVQAIRNC 439

Query: 316 PHI---LYISCN---------------PDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
             I   +++SC                PDS  +   +L     + +    D FP+T H E
Sbjct: 440 RAIRTLVFVSCKLHGETTRNITELCCPPDSAKK---LLGEPFVLRQAVPVDLFPHTAHCE 496

Query: 358 CGVLLVR 364
             +L  R
Sbjct: 497 LALLCTR 503


>gi|332290054|ref|YP_004420906.1| 23S rRNA methyluridine methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330432950|gb|AEC18009.1| 23S rRNA methyluridine methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 387

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 75/392 (19%), Positives = 132/392 (33%), Gaps = 50/392 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP---IHYRMRAEFHIWHDGDDL 58
           S   L   Y+QQ+  K   L+Q +          F S+       R RA+  +    +  
Sbjct: 13  SCAWLEQPYQQQIERKQQHLQQCLSELVSEETIWFPSQQSAQQAMRNRAKMVVSGVVEKP 72

Query: 59  YHIMF--DQQTKERMRIDYFM---PGSLLINALMIEMMATIRLEPL--------LRAKLF 105
              +          + +            I + + + +A   L P         L+  L 
Sbjct: 73  ILGILTDPNDMNSAIDLTDCPLYPIEFKKIFSQLKDFIARAGLVPYNVAKRKGELKYLLL 132

Query: 106 QIDYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKI 160
                  Q     V     +L  +         +L   L      IQ    A    +T+I
Sbjct: 133 TQSQFNQQFMLRFVLRSETKLPLIRRELPSLQQKLPQ-LAVISANIQPQHAAILEGETEI 191

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219
                 V E        +        F Q N  +   +       T+ +    + +L+CG
Sbjct: 192 YFTEQQVLEE---QFNQISLFIRPQGFFQTNPQVAAALYHTAQQWTQALPIKQIWDLFCG 248

Query: 220 NGNFSLVLARHFDRV------LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            G F L  A    +V      + +EI++ ++ +AR       + N     + + +F    
Sbjct: 249 VGGFGLHCALARKKVEPEVSLVGIEISESAIRSARLAAEKAGLYNAIFQDLDASKF---- 304

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHIL-YISCNPDSLCRD 331
                            +   + V+PPR G+ +  +  + +  P  L Y SCN  ++ +D
Sbjct: 305 -----------QANQGDKPDLVIVNPPRRGIGEKLIQYLNELQPRFLLYSSCNVTTMQQD 353

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           L  LS  + + ++ LFD FP+T H E  VLL 
Sbjct: 354 LQRLS-GYHLNKVQLFDMFPHTAHYEVLVLLQ 384


>gi|226323271|ref|ZP_03798789.1| hypothetical protein COPCOM_01043 [Coprococcus comes ATCC 27758]
 gi|225208461|gb|EEG90815.1| hypothetical protein COPCOM_01043 [Coprococcus comes ATCC 27758]
          Length = 310

 Score =  179 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 28/287 (9%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
            G       Y++QL +K   +  ++  +      I    P +YR +       D      
Sbjct: 20  GGCQYQGVPYKEQLKKKQKMVNALLSKYGKVEPIIGMENPYYYRNKVHAVFDRDRKGNIV 79

Query: 61  -IMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQID 108
              ++ +T   + ++  +               L+ +  I+         L R  L +  
Sbjct: 80  SGTYEAKTHRVVPVENCLIEDKKSQEIIRTIRGLLKSFKIKTYDEDTGYGLFRHVLIRRG 139

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------ANKTKIC 161
           +   +S + +V L+    +  +       LR         +  I           + K+ 
Sbjct: 140 F---KSGEIMVVLVLGSPILPSSNNFVKALRKEHPEITTVVLNINDRKTSMILGEREKVL 196

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGN 220
             + ++ + L        +R    SF Q N      + +  +  A    +  +++ YCG 
Sbjct: 197 YGKGFIRDELC----GCTFRISPKSFYQVNPVQTEILYQKAIEFAHLTGKESVIDAYCGI 252

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G   L+ + H   V+ VE+ K +V+ A  N   N + NV+      +
Sbjct: 253 GTIGLIASGHAKEVVGVELNKDAVKDAILNAKENQIRNVRFFPGRCR 299


>gi|302841023|ref|XP_002952057.1| hypothetical protein VOLCADRAFT_118051 [Volvox carteri f.
           nagariensis]
 gi|300262643|gb|EFJ46848.1| hypothetical protein VOLCADRAFT_118051 [Volvox carteri f.
           nagariensis]
          Length = 454

 Score =  179 bits (454), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 85/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            Q DLLELYCGNGNF++ LA++F RV+A E+AK SVEAAR+N+ AN V+NV + RM+S+E
Sbjct: 297 PQDDLLELYCGNGNFTVPLAQNFRRVVATEVAKSSVEAARFNLEANGVSNVFLARMASEE 356

Query: 269 FTQAMRREREFNRLKDI-DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327
           F + MR      RL+ +      R +TI VDPPR+GLD  TV +++ +  I+YISCNP++
Sbjct: 357 FAETMRSRGSRRRLEGLGPWEELRLRTILVDPPRAGLDGFTVELLKEFDRIVYISCNPET 416

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L  +L  ++TTH I R A FDQFPYT H+ECGV L R+
Sbjct: 417 LHANLRAIATTHKIARFAAFDQFPYTHHLECGVYLTRR 454



 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 23/212 (10%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRM-----RAEFHIWHDGDDL 58
            +   QY  QL  KV +L+++   F  P+L++F S P          +           L
Sbjct: 29  NIDESQYGSQLQAKVFKLKELFREFDPPDLEVFESPPRRAPPQPPPLKTALKAPLPQPAL 88

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
            H+   Q+              + +N LM  +       P LR +LFQ+++ T+ +  A+
Sbjct: 89  RHLQQWQRRH------------VEVNELMEAVRQECIQCPELRNRLFQVNFHTTLAGDAM 136

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHAR------KYQIQLIGRANKTKICLDRDYVDERLT 172
           VTL+YHR L   W   A RLRD L A         +  +IGR+ K K+ LD  +V ERL 
Sbjct: 137 VTLLYHRKLGAEWTAAAERLRDVLAATPTAAAAGRRPHVIGRSRKQKVDLDASFVLERLR 196

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
           V GR  + +Q+E +F+QPN  +  HML W L 
Sbjct: 197 VGGREYVQKQVEGAFSQPNGTVCQHMLGWALD 228


>gi|269794934|ref|YP_003314389.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Sanguibacter keddieii DSM 10542]
 gi|269097119|gb|ACZ21555.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Sanguibacter keddieii DSM 10542]
          Length = 442

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 147/386 (38%), Gaps = 71/386 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
            G L     E Q   K   + + +      + ++     P       + +R R +     
Sbjct: 105 GGELAHVALEAQRRWKAGVVEEQLSRLAKIDREVTVEPAPGDDERGGLGWRTRIDLVADA 164

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL---FQIDYL 110
           DG      M   ++ + + ++     S        E++A    E +   +     +I+ +
Sbjct: 165 DG---RAGMRQFRSHDVLPLNTMPLASA-------EVLAAADAEKIFAKRWTPGAEIEIV 214

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
                   + L+  ++L +   +    +R +                         V E 
Sbjct: 215 APADGSDPIVLLDGQVLRNGHLDTRPNVRRS-------------------------VSET 249

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG------IQGDLLELYCGNGNFS 224
           +TV G  + YR   + F Q +      + + VL A +G          +++LY G G F+
Sbjct: 250 VTVDGEEISYRVAADGFWQVHREAPSLLAQVVLDAARGGADGDLTDATVVDLYSGAGLFT 309

Query: 225 LVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           + LA+      RV+A+E  + +V+ AR N  A      + V +   +  Q +R       
Sbjct: 310 VPLAKAVGQVGRVVAIEGDERAVKDARRNAHA-----FEQVELHVGQVDQVLRTAG---- 360

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-T 338
                        + +DPPR+G    T+  +   +   I+Y++C+P +L RD++ L+   
Sbjct: 361 ----HGAIAGADVVVLDPPRTGAGAKTIAQIVALSPSRIVYVACDPAALARDIAYLAKDG 416

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + +E +  FD FP T H+EC  +L R
Sbjct: 417 YELESVRAFDLFPMTHHVECVAVLTR 442


>gi|269784754|ref|NP_766128.2| tRNA (uracil-5-)-methyltransferase homolog isoform a [Mus musculus]
 gi|269784756|ref|NP_001161466.1| tRNA (uracil-5-)-methyltransferase homolog isoform a [Mus musculus]
 gi|81897080|sp|Q8BQJ6|TRM2_MOUSE RecName: Full=tRNA (uracil-5-)-methyltransferase homolog; AltName:
           Full=TRM2 homolog
 gi|26340260|dbj|BAC33793.1| unnamed protein product [Mus musculus]
 gi|34784571|gb|AAH56937.1| Trmt2b protein [Mus musculus]
 gi|123220830|emb|CAM15919.1| novel protein [Mus musculus]
          Length = 493

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 145/428 (33%), Gaps = 90/428 (21%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-----------------------VPNLQIFRSEPIHYRM 45
            YE QL  K +  ++++ + +                       + +  I       YR 
Sbjct: 84  SYEAQLKVKFEAQKKLLQSLESHLKVLHGVSDTVAAHQSEGLRCLLHPIIPSPTTTGYRN 143

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           ++ F ++   D       Y++   +           +P + L N            E  L
Sbjct: 144 KSTFSVYRSPDGNPKTVGYYLGTWKDGN-----VVCLPCNHLKNIPEKHSQVAQYYEVFL 198

Query: 101 R-------------AKLFQIDYLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDA---- 141
           R                 ++   T++     AIVT     L ++      + L+D     
Sbjct: 199 RQSSVEPCLLFHEGGHWRELVVRTNRQGHTMAIVTFHPQGLSEEEVCVQKVTLKDFFTKG 258

Query: 142 ------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
                 L +  +Q   + R +  +      + +  +      L  R   ++F Q N    
Sbjct: 259 PGAICELTSLYFQESTMTRCSHQQSPYQLLFGEPHIFEDLLGLKIRISPDAFFQINTAGA 318

Query: 196 VHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
             ML  ++    G+  +  LL++ CG G   L +A+   +V  +E+ + +VE AR+  A 
Sbjct: 319 E-MLYRIIGELSGVNSESLLLDICCGTGVIGLSVAQRASQVHGIELVEQAVEDARWTAAF 377

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N V N +     ++     + + ++  +L              V+P R+GL    V  ++
Sbjct: 378 NGVTNCEFHAGRAETILPQLLKSQKDEKL----------TVAVVNPARAGLHYRVVRAIR 427

Query: 314 AYPHI---LYISCNP---DSLCRDL-----------SILSTTHTIERLALFDQFPYTRHM 356
               I   +++SC P    +  R+             +L     +      D FP+T H 
Sbjct: 428 NCRTIHTLVFVSCKPHGEST--RNFIELCCPPNSAKQLLGDPFVLREAVPVDLFPHTPHC 485

Query: 357 ECGVLLVR 364
           E  +L  R
Sbjct: 486 ELVLLFTR 493


>gi|149640047|ref|XP_001513281.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 481

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 134/424 (31%), Gaps = 82/424 (19%)

Query: 9   QYEQQLAEK-------VDRLRQMMLAFQVPNLQIFRSE----PI------------HYRM 45
            Y++QL  K       +  L   + A  +P       E    P              YR 
Sbjct: 72  DYQEQLKVKFEAQKRVLQTLASRLRARGLPEPGTVAPESDELPWLLHPIIPSPVISEYRN 131

Query: 46  RAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN------ALMIEMMATIRLEPL 99
           ++ F +    D     +       R R    +    L N       +     A ++  PL
Sbjct: 132 KSTFSVNRGPDGNPKTVGQYLGTGRDRNIVCVRADQLKNIPEKHKQVAQCYEAFLQKSPL 191

Query: 100 LRAKLFQID-------YLTSQSDQAIVTLIYHRLL---DDAW--RECAIRLRDALHARKY 147
               LF            T+   Q +  + +H      ++ W  +E              
Sbjct: 192 GPCLLFHRGGHWRELIVRTNARGQVMAIITFHPQQLNQEELWAQKEAVREFFTKGPGAVC 251

Query: 148 QIQLIGRANKT-----------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            +  +     T           ++     Y+ E L+     L +R    +F Q N     
Sbjct: 252 GLSSLYFQESTMTRCSHRQSPYQLLSGEPYILEELS----GLTFRISPEAFFQINTPGAE 307

Query: 197 HMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            + +     +      +L ++ CG G   L LA    RVL VE+ + +VE AR+  A N 
Sbjct: 308 LLYQTEGRLSGLNPATVLLDICCGTGAIGLSLAPRVSRVLGVELIEQAVEDARWTAAFNG 367

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++N +     +++    +           +     R     V+P R+GL    V  ++  
Sbjct: 368 ISNCEFHAGPAEKIVPQLL----------VSQMEGRSLVAVVNPARAGLHPRVVRAIRNC 417

Query: 316 PHI---LYISCNPDSLC-RDL-----------SILSTTHTIERLALFDQFPYTRHMECGV 360
             I   +++SC P     R+             +L      E     D FP+T H E  V
Sbjct: 418 GPIRRLVFVSCKPHGEAMRNFFELCCPPDASKKLLGEPFVPEEAVPVDLFPHTLHCELVV 477

Query: 361 LLVR 364
           L  R
Sbjct: 478 LFSR 481


>gi|259489663|tpe|CBF90119.1| TPA: tRNA methyltransferase (Eurofung) [Aspergillus nidulans FGSC
           A4]
          Length = 575

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 139/404 (34%), Gaps = 63/404 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-------FRSE-PIHYRMRAEFHI-- 51
              L +  Y  QLA K   + +    F     ++       F S     YR +   H   
Sbjct: 191 GCQLQMLSYADQLAHKKRIVEKAYANFSGLIPELIPAIGDTFPSPLQYGYRTKLTPHFPP 250

Query: 52  --WHDGDDLYH---IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE--------- 97
              +D  +          +  +  + I+    G+ +I A +      +            
Sbjct: 251 PKRNDAGEPQVPPIGFTYKNQRRHLDIEDCPLGTDIIRAGLKSERKKVAENLQQYKKGAT 310

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
            LLR    +    ++ +D    T       ++  +                +     + +
Sbjct: 311 ILLRETTSRTPKSSTDTDPTSATKPTVITYENKNKPHQE------SGDVITLDRPNYSEE 364

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD- 212
            +   D++             ++     +F Q N  I      ++ E  L  T    G  
Sbjct: 365 KRCVTDQNA---TSVEYIDDYLFTNKAGAFFQNNNSILSGFTEYIREHALTPTSDKSGTP 421

Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              LL+ Y G+G F++ L+  F   L V++A  S+ +AR N  AN++ N       +   
Sbjct: 422 IKYLLDAYSGSGLFTITLSPLFKSSLGVDVAGDSIVSARENARANNLPNTGFAAADAAVL 481

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
            + +    +                + +DPPR G  +  +  + AY    ++Y+SCN  +
Sbjct: 482 FKDVPYPPD-------------QTLLVIDPPRKGCSEDFLRQLLAYGPRRVVYVSCNVHT 528

Query: 328 LCRDLSILSTT-------HTIERLALFDQFPYTRHMECGVLLVR 364
             RD++++          + IE +  FD FP T H+E   +L +
Sbjct: 529 QARDVAVMVQGDEKTGVRYNIESIRGFDFFPQTGHVEGVAVLNK 572


>gi|67515719|ref|XP_657745.1| hypothetical protein AN0141.2 [Aspergillus nidulans FGSC A4]
 gi|40746163|gb|EAA65319.1| hypothetical protein AN0141.2 [Aspergillus nidulans FGSC A4]
          Length = 529

 Score =  179 bits (453), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 139/404 (34%), Gaps = 63/404 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-------FRSE-PIHYRMRAEFHI-- 51
              L +  Y  QLA K   + +    F     ++       F S     YR +   H   
Sbjct: 145 GCQLQMLSYADQLAHKKRIVEKAYANFSGLIPELIPAIGDTFPSPLQYGYRTKLTPHFPP 204

Query: 52  --WHDGDDLYH---IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE--------- 97
              +D  +          +  +  + I+    G+ +I A +      +            
Sbjct: 205 PKRNDAGEPQVPPIGFTYKNQRRHLDIEDCPLGTDIIRAGLKSERKKVAENLQQYKKGAT 264

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
            LLR    +    ++ +D    T       ++  +                +     + +
Sbjct: 265 ILLRETTSRTPKSSTDTDPTSATKPTVITYENKNKPHQE------SGDVITLDRPNYSEE 318

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD- 212
            +   D++             ++     +F Q N  I      ++ E  L  T    G  
Sbjct: 319 KRCVTDQNA---TSVEYIDDYLFTNKAGAFFQNNNSILSGFTEYIREHALTPTSDKSGTP 375

Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              LL+ Y G+G F++ L+  F   L V++A  S+ +AR N  AN++ N       +   
Sbjct: 376 IKYLLDAYSGSGLFTITLSPLFKSSLGVDVAGDSIVSARENARANNLPNTGFAAADAAVL 435

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDS 327
            + +    +                + +DPPR G  +  +  + AY    ++Y+SCN  +
Sbjct: 436 FKDVPYPPD-------------QTLLVIDPPRKGCSEDFLRQLLAYGPRRVVYVSCNVHT 482

Query: 328 LCRDLSILSTT-------HTIERLALFDQFPYTRHMECGVLLVR 364
             RD++++          + IE +  FD FP T H+E   +L +
Sbjct: 483 QARDVAVMVQGDEKTGVRYNIESIRGFDFFPQTGHVEGVAVLNK 526


>gi|26324958|dbj|BAC26233.1| unnamed protein product [Mus musculus]
          Length = 493

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 74/428 (17%), Positives = 145/428 (33%), Gaps = 90/428 (21%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-----------------------VPNLQIFRSEPIHYRM 45
            YE QL  K +  ++++ + +                       + +  I       YR 
Sbjct: 84  SYEAQLKVKFEAQKKLLQSLESHLKVLHGVSDTVAAHQSEGLRCLLHPIIPSPTTTGYRN 143

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           ++ F ++   D       Y++   +           +P + L N            E  L
Sbjct: 144 KSTFSVYKSPDGNPKTVGYYLGTWKDGN-----VVCLPCNHLKNIPEKHSQVAQYYEVFL 198

Query: 101 R-------------AKLFQIDYLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDA---- 141
           R                 ++   T++     AIVT     L ++      + L+D     
Sbjct: 199 RQSSVEPCLLFHEGGHWRELVVRTNRQGHTMAIVTFHPQGLSEEEVCVQKVTLKDFFTKG 258

Query: 142 ------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
                 L +  +Q   + R +  +      + +  +      L  R   ++F Q N    
Sbjct: 259 PGAICELTSLYFQESTMTRCSHQQSPYQLLFGEPHIFEDLLGLKIRISPDAFFQINTAGA 318

Query: 196 VHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
             ML  ++    G+  +  LL++ CG G   L +A+   +V  +E+ + +VE AR+  A 
Sbjct: 319 E-MLYRIIGELSGVNSESLLLDICCGTGVIGLSVAQRASQVHGIELVEQAVEDARWTAAF 377

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N V N +     ++     + + ++  +L              V+P R+GL    V  ++
Sbjct: 378 NGVTNCEFHAGRAETILPQLLKSQKDEKL----------TVAVVNPARAGLHYRVVRAIR 427

Query: 314 AYPHI---LYISCNP---DSLCRDL-----------SILSTTHTIERLALFDQFPYTRHM 356
               I   +++SC P    +  R+             +L     +      D FP+T H 
Sbjct: 428 NCRTIHTLVFVSCKPHGEST--RNFIELCCPPNSAKQLLGDPFVLREAVPVDLFPHTPHC 485

Query: 357 ECGVLLVR 364
           E  +L  R
Sbjct: 486 ELVLLFTR 493


>gi|302673836|ref|XP_003026604.1| hypothetical protein SCHCODRAFT_62068 [Schizophyllum commune H4-8]
 gi|300100287|gb|EFI91701.1| hypothetical protein SCHCODRAFT_62068 [Schizophyllum commune H4-8]
          Length = 425

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 76/402 (18%), Positives = 137/402 (34%), Gaps = 92/402 (22%)

Query: 3   GTLLID-QYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEP--IHYRMRAEFHI-- 51
           G    +  YE+QL  K D + +    +       +P +      P    YR +   H   
Sbjct: 70  GCQYQELSYEKQLELKRDVVVKAYKHYADVPSEWIPEIGSTMPSPEQYGYRTKITPHFNA 129

Query: 52  ------------WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
                           + L        T+  M I+     + ++      M   I    +
Sbjct: 130 PPKAAQREPPPAGEKPEWLRIGFNRAGTQNVMDIEDCPIATPILRETYGPMREEIEKNIM 189

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
                         + +  V+LI    LD A       +  A+ + K  ++ +       
Sbjct: 190 --------------TYKKGVSLILRDSLDPADTTNTKHI--AVTSHKGNVREMVGDK--- 230

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-------D 212
                              I+    +SF Q N  +   +  +V  A              
Sbjct: 231 -------------------IFEYPAHSFFQNNNAVLTPLTTYVRDALIPESSSTPSLLTH 271

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFT 270
           L++ YCG G F++ LA HF  V  +E++  S+++A  N   N +  +        + +  
Sbjct: 272 LVDTYCGAGLFAIALAPHFATVAGIELSAESIKSATRNAELNSLPADKCTFRAGDAADI- 330

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSL 328
                   F+ +KD          + +DPPR G D+  +  +VQ  P  ++Y+SCN  + 
Sbjct: 331 --------FSAVKDFPAER---TAVVIDPPRKGCDEPFLRQLVQFRPAAVVYVSCNVHTQ 379

Query: 329 CRDL--------SILSTTHTIERLALFDQFPYTRHMECGVLL 362
            RD+         +    + +E +  FD FP T H+E   +L
Sbjct: 380 ARDVGWVLREMEKVEGKRYRVESVRGFDLFPQTAHVESVAVL 421


>gi|52424450|ref|YP_087587.1| 23S rRNA methyluridine methyltransferase [Mannheimia
           succiniciproducens MBEL55E]
 gi|97273737|sp|Q65VK8|RUMB_MANSM RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|52306502|gb|AAU37002.1| TrmA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 389

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 140/396 (35%), Gaps = 53/396 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL---QIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   +   Y++QL EK   L+Q +       L     F+S    +R +A+  +    +  
Sbjct: 15  SCQWINRPYDEQLNEKQIHLKQQIAPLDQSQLRWSAPFQSRQSGFRNKAKMVVSGAVERP 74

Query: 59  YHIMFDQQT--KERMRIDYFM---PGSLLINALMIEMMATIRLEPL--------LRAKLF 105
              +   Q   +  + +   +    G   I  ++ + +    L P         L+  L 
Sbjct: 75  VLGILKDQNAPQSAVDLTDCLLYSAGFKPIFPVLKDFIGRAGLVPYNVAKQKGELKYILL 134

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-------RKYQIQLIGRANKT 158
                        V    +++     R    +LR+ L          + Q   I    K 
Sbjct: 135 TESGYQGDIMLRFVLRSENKI--PLIRRELAKLREKLPQLKVISANIQPQHAAILEGEKE 192

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELY 217
               +R  ++ER       +        F Q N  +   +        K +    L +L+
Sbjct: 193 IFFTERQVLEERF----NRIPLFIRPQGFFQTNPQVAEGLYGTAQQWVKDLPVNKLWDLF 248

Query: 218 CGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           CG G F L  A+          +  +EIA  ++  A  +     +  V    + +  F  
Sbjct: 249 CGVGGFGLHCAKALQEKNPDIELTGIEIAPSAIYCAGLSAQKCGLKKVNFQSLDAANFA- 307

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLC 329
                        ++    +   + V+PPR G+       + Q  P  ILY SCN  S+ 
Sbjct: 308 -------------LNQDENKPDLVIVNPPRRGIGKPLAQFLNQMQPQFILYSSCNAISMT 354

Query: 330 RDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +DL  L+  + ++++ LFD FP+T H E   LL+++
Sbjct: 355 KDLLELTH-YQLQKIQLFDMFPHTSHYEVLTLLIKR 389


>gi|159483505|ref|XP_001699801.1| tRNA (uracil-5)-methyltransferase [Chlamydomonas reinhardtii]
 gi|158281743|gb|EDP07497.1| tRNA (uracil-5)-methyltransferase [Chlamydomonas reinhardtii]
          Length = 206

 Score =  179 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 22/209 (10%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR 229
           +  A   L +R    +F Q N+     + + V          LL ++ CG G   L+LA 
Sbjct: 5   IHDALCELKFRISPTAFFQVNSPATCVLYKLVGDWAAARPKTLLLDICCGTGTIGLMLAS 64

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +V+ V+  + +VE AR N A N + N + V   +++  Q++      N        +
Sbjct: 65  KVAKVVGVDNVESAVEDARVNAALNGIGNAEFVAGKAEDALQSILDLHAAN-------DA 117

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILS---------- 336
           Y       DPPR+GL  + +  +     I   +++SCNPD+L  ++++L           
Sbjct: 118 YEDVVAVCDPPRAGLHKSVLRALLDCAKIRRLVFVSCNPDNLISNVALLCVPPPARRANS 177

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLVR 364
            T          D FP+T H+E  +LL R
Sbjct: 178 PTPFLAPSATALDLFPHTAHVETVMLLER 206


>gi|146422481|ref|XP_001487178.1| hypothetical protein PGUG_00555 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 532

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 145/380 (38%), Gaps = 47/380 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHI---WHDGD 56
           Y+QQL  K   +      F          P +      P   +YR +   H    +   +
Sbjct: 174 YDQQLVFKKQTIENAYTHFAPKLMAANLLPKVDSTEPSPLQYNYRTKLTPHFNLPYKKPE 233

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA-KLFQIDYLTSQSD 115
           ++        +K R        GS  I  +    + T  +   ++  +L           
Sbjct: 234 NMPLPPLGFGSKGRPEWRNTDGGSGSILDIEECSIGTPIVNVGMKNERLRFKKEFEKYKK 293

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A + L  +  ++D     +      +   K    +     KT +   R  V E +    
Sbjct: 294 GATILLRENTSINDTDLVGSTNESGEVSTIKDNDSI-----KTCVTNSRQIVREVV---- 344

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD 232
               +      F Q N  I   +L++V   LA +      L++ YCG+G FS+  + +  
Sbjct: 345 DGREFEFSAGEFFQNNNSILPAVLQYVRSNLAISDKQDNYLVDAYCGSGLFSISCSDNVK 404

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V+ VE++  SV+ A  N A N++ NVK +   ++E              KDID  + + 
Sbjct: 405 KVIGVEVSADSVKFAERNAANNNIANVKFIVGKAEEIF------------KDIDTPALQT 452

Query: 293 KTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL------STTHTIERL 344
             I  DPPR G DD  +  +  Y    I+YISCN  S  RD+            + +E +
Sbjct: 453 SVIL-DPPRKGCDDVFLNQLSEYNPVKIVYISCNVHSQARDVEWFLNNTVNGANYKVESI 511

Query: 345 ALFDQFPYTRHMECGVLLVR 364
             FD FP T H+E   +L+R
Sbjct: 512 KGFDFFPQTHHVESVAVLIR 531


>gi|310794654|gb|EFQ30115.1| hypothetical protein GLRG_05259 [Glomerella graminicola M1.001]
          Length = 608

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 133/404 (32%), Gaps = 62/404 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFR--SEPIHYRMRAEFHIWHDG 55
                +  Y+ QLA K   + +    F   +     ++      P+ Y  R +     DG
Sbjct: 221 GCQFQMLSYDAQLAHKRTIVEKAFRNFSNLDPALVPEVGETVGSPLQYGYRTKLTPHFDG 280

Query: 56  DDLYH---------------IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE--P 98
              +H                   +  +  + I+    G+  +   M    + I  E   
Sbjct: 281 PPGHHKKNRPRQTLDRVPEIGFNVKGRRAVLDIEDCPIGTDAVRLGMKRERSRIAREFGN 340

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
             +     +   T +  +  V         +  +  A    DA+         +      
Sbjct: 341 YTKGATILLRESTKRYPKKKVVGAAAEEDQNPEQPPAETPSDAIRVDTDTHTDV------ 394

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------ 212
           K CL         T      ++    NSF Q N  I      ++        G       
Sbjct: 395 KTCLSEASAMT--TEYIGPYVFTNPANSFFQNNNSILPTFTGYIRDRVMPPAGPHRDRIK 452

Query: 213 -LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEF 269
            L++ Y G+G F++ LA  F     ++IA+ S+E AR N   N +  +    +   +   
Sbjct: 453 YLIDAYSGSGLFTITLASLFQGSTGIDIAQDSIECARKNARLNGLPESQCNFLAADA--- 509

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS 327
                      +L     +      + +DPPR G D   +G +       ++Y+SCN  +
Sbjct: 510 ----------PQLFAHVTYPADETVVVIDPPRKGCDADFLGQLLRFGPRRVVYVSCNVHT 559

Query: 328 LCRDLSILSTT-------HTIERLALFDQFPYTRHMECGVLLVR 364
             RD+ +L          + IE +  FD FP T H+E   +L R
Sbjct: 560 QARDVGVLVRGDGGEGTRYEIESVVGFDFFPQTGHVEGVAVLNR 603


>gi|190344722|gb|EDK36457.2| hypothetical protein PGUG_00555 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 532

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 145/380 (38%), Gaps = 47/380 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHI---WHDGD 56
           Y+QQL  K   +      F          P +      P   +YR +   H    +   +
Sbjct: 174 YDQQLVFKKQTIENAYTHFAPKLMAANLLPKVDSTEPSPLQYNYRTKLTPHFNLPYKKPE 233

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA-KLFQIDYLTSQSD 115
           ++        +K R        GS  I  +    + T  +   ++  +L           
Sbjct: 234 NMPLPPLGFGSKGRPEWRNTDGGSGSILDIEECSIGTPIVNVGMKNERLRFKKEFEKYKK 293

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A + L  +  ++D     +      +   K    +     KT +   R  V E +    
Sbjct: 294 GATILLRENTSINDTDLVGSTNESGEVSTIKDNDSI-----KTCVTNSRQIVREVV---- 344

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD 232
               +      F Q N  I   +L++V   LA +      L++ YCG+G FS+  + +  
Sbjct: 345 DGREFEFSAGEFFQNNNSILPAVLQYVRSNLAISDKQDNYLVDAYCGSGLFSISCSDNVK 404

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V+ VE++  SV+ A  N A N++ NVK +   ++E              KDID  + + 
Sbjct: 405 KVIGVEVSADSVKFAERNAANNNIANVKFIVGKAEEIF------------KDIDTPASQT 452

Query: 293 KTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL------STTHTIERL 344
             I  DPPR G DD  +  +  Y    I+YISCN  S  RD+            + +E +
Sbjct: 453 SVIL-DPPRKGCDDVFLNQLSEYNPVKIVYISCNVHSQARDVEWFLNNTVNGANYKVESI 511

Query: 345 ALFDQFPYTRHMECGVLLVR 364
             FD FP T H+E   +L+R
Sbjct: 512 KGFDFFPQTHHVESVAVLIR 531


>gi|170106666|ref|XP_001884544.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164640455|gb|EDR04720.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 456

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 143/410 (34%), Gaps = 83/410 (20%)

Query: 3   GTLL-IDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSE-PIHYRMRAEFHI-- 51
           G    +  Y+ QL  K D + +    +         P L    S     YR +   H   
Sbjct: 81  GCQYQMLSYDTQLDLKRDVVVKAYRNYSKIPEPSLPPILSTIPSPLQYAYRTKLTPHFDA 140

Query: 52  ----------WHDGDDLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
                       +  D  HI F++   +  M I+     + +IN     M   I      
Sbjct: 141 PPKSARKGLRSTEKPDWLHIGFNRIGAQSTMDIEDCPIATPVINESYGPMREDIIKNIYT 200

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
             K   +  L   S    +TL       D+  +   RL +A +                +
Sbjct: 201 YKK--GVSLLFRDSLDTSITLDP-----DSTSDSVDRLSEAFN------------RHICV 241

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--------- 211
              +  V E++       ++     SF Q N  + + + ++V  A               
Sbjct: 242 TDQKGTVREKVG----DWVFEYNGGSFFQNNNSVLLPLTDYVRDAIFPPATTTTTTTATP 297

Query: 212 ----DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMS 265
                L++ YCG+G F++VL+ HFD+V  +E++  S+  A  N   N++    +     +
Sbjct: 298 ARPTHLVDTYCGSGLFAIVLSPHFDKVAGIELSADSIRYATRNAKLNNIPEEKISFRAGN 357

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
           + E                +         + +DPPR G D+  +  +   A   I+Y+SC
Sbjct: 358 AGEIFAT------------VGDFPADESVVLIDPPRKGCDEFFIQQLLSFAPRTIVYVSC 405

Query: 324 NPDSLCRDLS---------ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           N  +  RD+           +   + +E +  FD FP T H+E   +L R
Sbjct: 406 NVHTQARDVGNILRATEGNEVGKKYVLESVRGFDLFPQTAHVESVAVLRR 455


>gi|16272896|ref|NP_439119.1| 23S rRNA methyluridine methyltransferase [Haemophilus influenzae Rd
           KW20]
 gi|260580048|ref|ZP_05847878.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae
           RdAW]
 gi|1175340|sp|P44083|RUMB_HAEIN RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|1573984|gb|AAC22619.1| RNA methyltransferase, putative [Haemophilus influenzae Rd KW20]
 gi|260093332|gb|EEW77265.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Haemophilus influenzae
           RdAW]
          Length = 392

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 130/386 (33%), Gaps = 50/386 (12%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           QQL EK   L+Q +++      Q    F+S    +R +A+  +    +     +      
Sbjct: 24  QQLTEKQYHLKQQLISINYDEAQWVAPFQSNQQGFRNKAKMVVSGSVERPILGILKNPND 83

Query: 69  ERMRIDYFM-------------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +  ID                     I    +      + +  L+  L      T +  
Sbjct: 84  PQSAIDLCDCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKYILLTESIATEKLM 143

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-----ANKTKICLDRDYVDER 170
              V    ++ L    RE    L    H     I L  +       + +I L      + 
Sbjct: 144 LRFVLRTENK-LPLIRRELPKLLEKLPHLEVISINLQPQHAAILEGEQEIFLTE---QQF 199

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLAR 229
           L      +        F Q N  +   +              +L +L+CG G F L  A+
Sbjct: 200 LPENFNGIPLFIRPRGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCGVGGFGLHCAK 259

Query: 230 HFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
                         +EI+  ++ AA ++     + +V    + +    +           
Sbjct: 260 ALQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLDAASVIE----------- 308

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHT 340
              + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +DL  L+  + 
Sbjct: 309 ---NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLTC-YK 364

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
             ++ LFD FP T H E  VLL RK 
Sbjct: 365 PLKIQLFDMFPQTSHYEVLVLLERKK 390


>gi|242208408|ref|XP_002470055.1| predicted protein [Postia placenta Mad-698-R]
 gi|220730955|gb|EED84805.1| predicted protein [Postia placenta Mad-698-R]
          Length = 445

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/409 (19%), Positives = 141/409 (34%), Gaps = 97/409 (23%)

Query: 3   GTLL-IDQYEQQLAEKVDRLRQM------MLAFQVPNLQIFRSEP--IHYRMRAEFH--- 50
           G    +  YE+QL  K D + +       +    VP + I    P    YR +   H   
Sbjct: 85  GCQYQMLSYEKQLDLKRDVVVKAYEHFSDLSPSSVPTVPITIGSPLQYGYRTKITPHFDA 144

Query: 51  ---------------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR 95
                          I +  D +        T++ M I+     +  +N           
Sbjct: 145 PPKKLQKSADKPLVTIENKPDWVKIGFNQIGTRQVMDIEDCPIATPTLNE---------- 194

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
             P LR  + +  +L   SDQA  + +          E  + + D               
Sbjct: 195 ALPPLRKNIIEHAFLQPSSDQAAASELMSSTNTGHAVEKHVCITDH-------------- 240

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT--------- 206
                   +  V ER+        +  I  SF Q N  + + +  +V  A          
Sbjct: 241 --------KATVRERVGDN----TFEYIAGSFFQNNNSVLLPLTSYVRDAIFAHHQSGPT 288

Query: 207 -KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVR 263
                  L++ YCG+G F++ LAR F +V  +E+++ S+  A  N   N +  +    + 
Sbjct: 289 APPRPTHLVDAYCGSGLFAITLARSFQKVAGIELSEDSIRCATRNAQLNDIPPDQCSFMS 348

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYI 321
             +          ++F R             + +DPPR G D+  +  +  +    ++Y+
Sbjct: 349 GDAANI---FATVQDFPR---------DQTVLIIDPPRKGTDEKFIDQLLEFQGALVVYV 396

Query: 322 SCNPDSLCRDLSIL--------STTHTIERLALFDQFPYTRHMECGVLL 362
           SCN  +  RD+  +           + +E L  FD FP T H+E   +L
Sbjct: 397 SCNVHTQARDVGTILRKSEASGGRRYVMESLVGFDLFPQTAHVESVAVL 445


>gi|109131524|ref|XP_001091317.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 4
           [Macaca mulatta]
          Length = 504

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 149/428 (34%), Gaps = 90/428 (21%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++            VP  +        I  S  I  YR 
Sbjct: 95  SYEEQLKVKFEAQKKILQRLESYIQMLNGVNVTTAVPKSESLPCLLHPIIPSPVINGYRN 154

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRL 96
           ++ F +    D       Y++   +           +         +       +    L
Sbjct: 155 KSTFSVNRGPDGNPKTVGYYLGTWRDGNIVCVRSNNLKNIPEKHSQVAQYYEVFLRQSPL 214

Query: 97  EPLLRAK----LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA--------- 141
           EP L         ++   T+     +  + +H  +L  +        +++          
Sbjct: 215 EPCLVFHEGGYWRELIVRTNSQGHTMAIITFHPQKLSQEELHVQKETVKEFFIRGPGAAC 274

Query: 142 -LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N     
Sbjct: 275 DLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINTAGAE 330

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            ML   +    G+  D  LL++ CG G   L LA+H  +VL +E+ + +VE AR+  A N
Sbjct: 331 -MLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSQVLGIELVEQAVEDARWTAAFN 389

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N +     +++    + + +E            +     V+P R+GL    +  ++ 
Sbjct: 390 GITNSEFHTGRAEKILPGLLKSKE----------DGQSVVAVVNPARAGLHYKVIQAIRN 439

Query: 315 YPHI---LYISCN---------------PDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
              I   +++SC                PDS  +    L     +++    D FP+T H 
Sbjct: 440 CGAIRTLVFVSCKLHGESTRNIIELCCPPDSAKK---HLGEPFVLQQAVPVDLFPHTPHC 496

Query: 357 ECGVLLVR 364
           E  +L  R
Sbjct: 497 ELVLLFTR 504


>gi|198433704|ref|XP_002130635.1| PREDICTED: similar to HpaII tiny fragments locus 9c [Ciona
           intestinalis]
          Length = 587

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 145/427 (33%), Gaps = 79/427 (18%)

Query: 8   DQYEQQLAEKVD-------RLRQMMLAFQVPNLQIFR-------------------SEPI 41
             YE+QL  K          +R+ + A    + ++F                      P 
Sbjct: 165 SSYEEQLKLKQSSMFSSLLEIRKKVSAVDNLDNEVFVWLMQQKKESGAFCPMDDILPSPC 224

Query: 42  --HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLL-INALMIEMMATIRLEP 98
              YR +  F +  + +D   + F          +   P  L+ +  +M +++       
Sbjct: 225 VGGYRNKCGFTVGKNSEDQAMVGFRLGRYRDQVCNVENPSCLIHVPDVMKQIVECFTQY- 283

Query: 99  LLRAKL------------FQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIRLRDALHA 144
           + R+KL             QI   T+  + ++V +   +  L D+  +     + D    
Sbjct: 284 VQRSKLSVYNTHTHEGFWKQITVRTTLENSSMVIITMCKQNLTDEKIQTELQSVIDHFET 343

Query: 145 RKYQIQLIGRA-------NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
              ++  +          N  +I +     D  +      L +R   ++F Q N      
Sbjct: 344 SNVKVDTMLYEGVPTHRCNSKEISIKTLTGDGVIYEKLFDLKFRISPDAFFQCNTKAAEV 403

Query: 198 ML--------EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +         + +       +  LL++ CG G   L L+   +R++ V+I + ++  A  
Sbjct: 404 LYKCIGDLVKQAIDETPDSKETALLDVCCGTGTIGLTLSSCVNRLVGVDICEQAIIDAVK 463

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N++ N +     +++             ++ +   +       VDPPR GL    +
Sbjct: 464 NATLNNITNAEFYVGKAEDVLPKA--------IESLSGINSMNLVAVVDPPRCGLHAKVI 515

Query: 310 GMVQAYPHI---LYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHME 357
            +++  P I   +Y+SC+ D    +   L                     D FP+T+H E
Sbjct: 516 KVIRQCPAIQYLIYVSCSVDQAKTNFVDLCRPQSKRLNGPPFKPMLAQPVDLFPHTKHCE 575

Query: 358 CGVLLVR 364
             +L  R
Sbjct: 576 VVLLFKR 582


>gi|149197047|ref|ZP_01874100.1| tRNA (uracil-5-) -methyltransferase [Lentisphaera araneosa
           HTCC2155]
 gi|149140157|gb|EDM28557.1| tRNA (uracil-5-) -methyltransferase [Lentisphaera araneosa
           HTCC2155]
          Length = 403

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 142/374 (37%), Gaps = 64/374 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRS-EPIHYRMRAEFHIWH-D 54
                   Y++Q+  K  + RQ++           ++++  S    +YR R   +    +
Sbjct: 78  GCAYQHIDYDEQVKIKEAQFRQVLKRIGGLNIDEDDVEVVSSTNKWNYRNRISLNARRTE 137

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
            D++ +    +  +  +RI   +     +N L+ ++  T            +  +   Q 
Sbjct: 138 TDEVIYGFIARDNRSLVRIKECLLAQAPVNELVPDLNKT------------KWGHKNRQR 185

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           D+ +   I H   +        +    L  R+            ++  DR++V       
Sbjct: 186 DRPLRATIRHASSNKETVAFYGKAPVGLPWRR------------EVYNDREFVM------ 227

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFD 232
                      SF+Q N  +   +          ++    +++ +CG+G  S+ L     
Sbjct: 228 --------PAGSFSQVNRDVAEALQRMCAEIISSLEACTFVIDAFCGSGFLSMGL--RDV 277

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V+ +EI    VEAA +N     +   K V     +  +    +                
Sbjct: 278 KVVGLEIDAKGVEAANFNAQDQGLTTHKYVAGDVNKLLRQRLGKLAPE------------ 325

Query: 293 KTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQ 349
            T+ +DPPR+G+   T+  +  ++   ILY+SC+P +L RDL  IL   +  ++LA+ D 
Sbjct: 326 TTLILDPPRAGVGPGTIKAISKRSPKWILYVSCDPGTLGRDLKEILPLGYKHKKLAMLDM 385

Query: 350 FPYTRHMECGVLLV 363
           FP T H E  +LL 
Sbjct: 386 FPQTSHFESLILLE 399


>gi|116326897|ref|YP_796617.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116329872|ref|YP_799590.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116119641|gb|ABJ77684.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123561|gb|ABJ74832.1| tRNA (uracil-5-)-methyltransferase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 417

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 143/372 (38%), Gaps = 60/372 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF------QVPNLQIFRSEPIHYRMRAEFHIWHDG 55
             +     Y+ +L  K   L++ +  F      Q+P ++I    P  YR  A+  +   G
Sbjct: 96  GCSYRHISYQNELKIKKFLLQETLERFLSKNHIQIPEIEILSENPNGYRNTAQIQLGFVG 155

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                  +++ +   + +  +   +L       E M ++    LL+ +  +  + +    
Sbjct: 156 GKRLAGFYEEFSHSIVNLPEYGCKNL------PEEMNSVF-SDLLKKEKTESMFASGS-- 206

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
                           +  ++RL           +++    ++    ++  V E      
Sbjct: 207 ----------------KTISLRLEG--------TKVVPYKKESVTFREKISVPE-----L 237

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           + +++      F+Q N  +    LE +       Q  +LELYCG+G  ++ L     + +
Sbjct: 238 KEIVWEIQAGGFSQINRYLVASWLEKIFELVPENQDRILELYCGSGLIAIALQSKTKKWI 297

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
             E +  SV+ A+ N   N   +     ++ +  T  +  E            +      
Sbjct: 298 GYEFSLNSVKQAKKNAQRNGFYSCDFKTLNLE--TNWIDSE-----------EALYSSFW 344

Query: 296 FVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPY 352
            ++PPR+GL    +  +++  P   LY SCN  +L RDLS+ L+  + +  + L D FP 
Sbjct: 345 IMNPPRAGLSKKVLQTLIEKNPRGFLYSSCNHTTLARDLSLILNGNYRLSNVTLVDFFPR 404

Query: 353 TRHMECGVLLVR 364
           T+H E  V + R
Sbjct: 405 TKHFEVIVKVER 416


>gi|289705334|ref|ZP_06501730.1| 23S rRNA methyluridine methyltransferase [Micrococcus luteus SK58]
 gi|289557849|gb|EFD51144.1| 23S rRNA methyluridine methyltransferase [Micrococcus luteus SK58]
          Length = 403

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 143/397 (36%), Gaps = 39/397 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S  L+   Y +QLA+K   +   +           + F S    +R +A+  +       
Sbjct: 13  SCPLMGVPYARQLADKQAAVLAALADAVDADTVVAEPFASAEAGFRNKAKLVVTGTAAAP 72

Query: 59  YHIMFDQQTKERM---------RIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLF 105
              + D +   R              +  G   +       +   +LEP        +L 
Sbjct: 73  RLGILDPRQHPRHHDGAGVDLRDCGLYEAGMEGVFEACAAAVTAAKLEPYDVAARTGELK 132

Query: 106 QIDYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIG----------R 154
            +    S   +A+V  +       DA R     L D L AR     ++            
Sbjct: 133 NVIVTLSPDREAMVRFVLRSADRLDALRAAVPGLLDDLAARGTPAAVVSANLLPEHVALP 192

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA--TKGIQGD 212
               +I L        LT+    +  R     F Q N  +   +           G+   
Sbjct: 193 EGDEEIVLAGG---PTLTMRLNGVGLRLRPQGFFQTNTAVTEGLYATAAEWVAEGGVPAS 249

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             +LYCG G F+  LAR     V  +E +  +V AAR   A   +     VR S+ + T 
Sbjct: 250 AWDLYCGVGGFAFHLARAGVRDVWGMESSAEAVAAARETAAELGL--ADRVRFSAGDATS 307

Query: 272 AMRRE-REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSL 328
           A+  E R        +    R   + V+PPR G+       ++    P +LY SCNP +L
Sbjct: 308 ALSFEKRRAPEALSFEKRRARPDAVVVNPPRRGIGAELADALEGSGVPTVLYSSCNPATL 367

Query: 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +DL+ +   + + R+ +FD FP TRH E   LL R+
Sbjct: 368 AQDLARMPR-YRVARVQVFDMFPQTRHAEVLTLLTRR 403


>gi|297561816|ref|YP_003680790.1| RNA methyltransferase, TrmA family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846264|gb|ADH68284.1| RNA methyltransferase, TrmA family [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 428

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 128/366 (34%), Gaps = 52/366 (14%)

Query: 11  EQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP--IHYRMRAEFHIWHDGDDLYHIMFD 64
           E Q A K   +   +           ++     P  + +R R  F +          +  
Sbjct: 91  EAQRALKGKVVADQLRRIAGIDRRVEVEELPGTPDGLGWRTRVRFAV---DSGGRAGLRR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            ++ +   ++  +     +  L +  +    +         +     + +D+A+V     
Sbjct: 148 HRSHDIEPVERCLIAHPGVTELGVTDVTWEGVRD------VEAVASAACADRAVVVTPTG 201

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
             LD             L      ++        ++   R  V E++        YR   
Sbjct: 202 ARLDS---------LPELGTSSAVLRRFKGGRVQQVR-GRRGVREKV----DGREYRVSA 247

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIA 240
             F Q +      +   VL A +   G+  L+LYCG G F+  LA       R + VE  
Sbjct: 248 GGFWQVHPAAAEVLTAAVLDALEPKPGETALDLYCGAGLFTGALAAAVGPEGRAMGVESG 307

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +V  ARYN+      +++ VR+   +    +R                R   + +DPP
Sbjct: 308 AEAVRDARYNLK-----DMEQVRVEQGDVAAQLRE-----------WADVRADVVVLDPP 351

Query: 301 RSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHME 357
           R+G     V  +       + Y+SC+P +L RDL+      + +  L  FD FP T H+E
Sbjct: 352 RAGAGAEVVRSLTGTRPRRVAYVSCDPATLARDLASFERADYRLVDLRAFDAFPMTHHVE 411

Query: 358 CGVLLV 363
           C  +L 
Sbjct: 412 CLAVLE 417


>gi|332254754|ref|XP_003276497.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 1
           [Nomascus leucogenys]
 gi|332254756|ref|XP_003276498.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 2
           [Nomascus leucogenys]
 gi|332254758|ref|XP_003276499.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 3
           [Nomascus leucogenys]
          Length = 504

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 151/426 (35%), Gaps = 86/426 (20%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++            VP  +        I  S  I  YR 
Sbjct: 95  SYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVPISERLPCLLHPIIPSPVINGYRN 154

Query: 46  RAEFHI-WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK- 103
           ++ F +      +   + F   T     I   +  + L N            E  LR   
Sbjct: 155 KSTFSVNRGPDGNPKTVGFYLGTWRDGNI-VCVQSNHLKNIPEKHSQVAQYYEVFLRQSP 213

Query: 104 ------------LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA-------- 141
                         ++   T+     +  +I+H  +L  +        +++         
Sbjct: 214 LEPCLVFHEGGYWRELTVRTNSQGHTMAIIIFHPQKLSQEELHVQKETVKEFFIRGPGAA 273

Query: 142 --LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
             L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N    
Sbjct: 274 CDLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINTAGA 329

Query: 196 VHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
             ML   +    G+  D  LL++ CG G   L LA+H  RVL +E+ + +VE AR+  A 
Sbjct: 330 E-MLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELVEQAVEDARWTAAF 388

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + N +     +++    + + +E            +     V+P R+GL    +  ++
Sbjct: 389 NGITNSEFHTGQAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVIQAIR 438

Query: 314 AYPHI---LYISC--------NPDSLCRDL----SILSTTHTIERLALFDQFPYTRHMEC 358
            +  I   +++SC        N   LC        +L     +++    D FP+T H E 
Sbjct: 439 NFRAIRTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCEL 498

Query: 359 GVLLVR 364
            +L  R
Sbjct: 499 VLLFTR 504


>gi|332861165|ref|XP_521176.3| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 3
           [Pan troglodytes]
 gi|332861167|ref|XP_003317598.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 1
           [Pan troglodytes]
 gi|332861169|ref|XP_003317599.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 2
           [Pan troglodytes]
          Length = 504

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 151/425 (35%), Gaps = 84/425 (19%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++            VP  +        I  S  I  YR 
Sbjct: 95  SYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVPKSERLSCLLHPIIPSPVINGYRN 154

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRL 96
           ++ F +    D       +++   +       +   +         +       +    L
Sbjct: 155 KSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPL 214

Query: 97  EPLLRAK----LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA--------- 141
           EP L         ++   T+     +  + +H  +L  +        +++          
Sbjct: 215 EPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKLSQEELHVQKEIVKEFFIRGPGAAC 274

Query: 142 -LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N     
Sbjct: 275 GLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINTAGAE 330

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            ML   +    G+  D  LL++ CG G   L LA+H  RVL +E+ + +VE AR+  A N
Sbjct: 331 -MLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELVEQAVEDARWTAAFN 389

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N +     +++    + + +E            +     V+P R+GL    +  ++ 
Sbjct: 390 GITNSEFHTGQAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVIQAIRN 439

Query: 315 YPHI---LYISC--------NPDSLCRDL----SILSTTHTIERLALFDQFPYTRHMECG 359
           +  I   +++SC        N   LC        +L     +++    D FP+T H E  
Sbjct: 440 FRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELV 499

Query: 360 VLLVR 364
           +L  R
Sbjct: 500 LLFTR 504


>gi|289825022|ref|ZP_06544385.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 368

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 121/372 (32%), Gaps = 45/372 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLALFDQFP 351
            I+R+ LFD FP
Sbjct: 350 RIQRVQLFDMFP 361


>gi|115387577|ref|XP_001211294.1| hypothetical protein ATEG_02116 [Aspergillus terreus NIH2624]
 gi|114195378|gb|EAU37078.1| hypothetical protein ATEG_02116 [Aspergillus terreus NIH2624]
          Length = 535

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 140/408 (34%), Gaps = 70/408 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-------FRSE-PIHYRMRAEFHIWH 53
              L +  YE QLA K   + +    F     ++       F S     YR +   H   
Sbjct: 147 GCQLQMMSYEDQLAHKKRIVEKAYANFSGLIPELVPAIGDTFPSPMQYGYRTKLTPHFAA 206

Query: 54  DGDDLYH---------------IMFDQQTKERMRIDYFMPGSLLINA----LMIEMMATI 94
            G                        +  +  + I+    G+ ++          +   I
Sbjct: 207 PGGSGRGKKKAPSGPVTEVPAIGFTYKNRRTDLDIEDCPLGTDIVRRGLKSERKRVAENI 266

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA-WRECAIRLRDALHARKYQIQLIG 153
                    L +   L +  D   +T+    L ++   +E    +R        + + + 
Sbjct: 267 NSYKKGATLLMRESTLRTPKDGVDITIPQPTLPENGPGKESGDVIRTEHDKYTEEKRCVT 326

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGI 209
            +N T +    +Y+D          ++     +F Q N  I      ++ +  L      
Sbjct: 327 DSNATSV----EYID--------NYVFTNKAGAFFQNNNSILSGFTEYIRQHALPKDNQD 374

Query: 210 QGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                  LL+ Y G+G F++ L+  F   L V++A+ S+ +AR N  AN + N       
Sbjct: 375 DPKPIKYLLDAYSGSGLFTITLSPLFRSSLGVDVAEQSIVSARDNARANSLPNTGFAAAD 434

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
           +    + +    E                + +DPPR G  D  +  +       ++Y+SC
Sbjct: 435 AATLFKDVPYPAE-------------QTLLVIDPPRKGCSDDFLRQLLSFGPRRVVYVSC 481

Query: 324 NPDSLCRDLSILSTT-------HTIERLALFDQFPYTRHMECGVLLVR 364
           N  +  RD++++          + IE +  FD FP T H+E   +L +
Sbjct: 482 NVHTQARDVAVMVQGDAQKNIRYEIESIRGFDFFPQTGHVEGVAILNK 529


>gi|297156656|gb|ADI06368.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 447

 Score =  177 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 140/382 (36%), Gaps = 61/382 (15%)

Query: 12  QQLAEKVDRLRQMMLAFQ---------------VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
            Q   K + + + +                    P  ++ R E   +R R ++ +   G 
Sbjct: 101 AQRRLKAEVITEQLSRLAGLTPEEARWDGTVEPAPGDKVTRGEVPAWRTRVQYAVDEQGR 160

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +   ++ E   +D+ +  +  +  L +E     ++         +    T  SD+
Sbjct: 161 P---GLRRHRSHEVEPVDHCLIAAPGVTELGVEKREWPQIA------TVEAIAATGSSDR 211

Query: 117 AIVTLIY--HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
            +V       RL           LR      +   + + R         R +V ER    
Sbjct: 212 QVVLTPRPGGRLPLVELDRPVSVLRLGEPQSREGTRPVHR------VHGRPFVRER---- 261

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDR 233
                +R  E  F Q +      ++E V+      +GD+ L+LYCG G F+  LA     
Sbjct: 262 AAGRTWRVGEGGFWQVHPKAADLLVEAVMQGLMPRKGDMALDLYCGVGLFAGALAERVGE 321

Query: 234 ---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              VL +E  K +VE AR+N+    ++ V+I     ++                      
Sbjct: 322 RGAVLGIESGKRAVEDARHNLQ--DLDRVRIEHGKVEQILPR--------------TGIT 365

Query: 291 RFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
               I +DPPR+G    TV  +       I Y++C+P +L RDL+      +   RL  F
Sbjct: 366 EADLIVLDPPRAGAGKETVARLASLGPRRIAYVACDPAALARDLTYFREAGYVPRRLRAF 425

Query: 348 DQFPYTRHMECGVLLVRKPSGW 369
           D FP T H+EC  +L   P+G 
Sbjct: 426 DLFPVTHHVECVAILE--PAGK 445


>gi|262158318|ref|ZP_06029435.1| RNA methyltransferase TrmA family [Vibrio cholerae INDRE 91/1]
 gi|262030000|gb|EEY48647.1| RNA methyltransferase TrmA family [Vibrio cholerae INDRE 91/1]
          Length = 315

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 115/291 (39%), Gaps = 28/291 (9%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA- 141
           I    I     ++ +  L+  L      + Q     V    H +L+   R     +    
Sbjct: 45  IRIAGIPPYNKLKKKGELKFILLTRSENSGQFMLRFVAR-SHAVLERIERNLPTLIAAFP 103

Query: 142 -LHARKYQIQLIGRAN---KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
            +      IQ +  A    + +I L      + L      +       SF Q N  +   
Sbjct: 104 MIEVISVNIQPVHMARLEGEEEIFLTE---TQSLLEHFNDVPMVIRPKSFFQTNPKVAEQ 160

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +        + I    + +L+CG G F+L  A     V  +EI   ++ +A+ +     +
Sbjct: 161 LYATARTWVREIAPTQMWDLFCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGI 220

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--A 314
           +N+    + S +F+Q+     E                + V+PPR GL       ++  A
Sbjct: 221 DNLSFAALDSAKFSQSQMSAPEL---------------VLVNPPRRGLGSELTAQLEALA 265

Query: 315 YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +ILY SCNP ++ +D++ LS+ + + R+  FD FP+T H E   LLVRK
Sbjct: 266 PKYILYSSCNPQTMVKDIAELSS-YQMIRVQWFDMFPHTDHAEVLTLLVRK 315


>gi|300121541|emb|CBK22060.2| unnamed protein product [Blastocystis hominis]
          Length = 628

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 130/393 (33%), Gaps = 72/393 (18%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KERMRID-------------YFMPGSLL 82
           S+   YR +  F I  D +    I F   +     + I                +  S L
Sbjct: 237 SKVEGYRNKCTFTIGKDRNGAPCIGFRMGSFINGNVIIGPIEYARSPFLTFSDVVVVSPL 296

Query: 83  INALMIEMMATIRLEPLL-----------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
           +  ++  + A I  +              R+ L +    T+Q    +V    +       
Sbjct: 297 MKQVVKRVEAFIVSKSYQTYDMCQHLGFWRSLLLRYSERTNQLLILVVVGNPYERSLPKA 356

Query: 132 RECAIRLRDALHARKYQIQ-------------LIGRANKTKICL--DRDYVDERLTVAGR 176
           +E   +L DA  +    +              L    +   I       +++ERL     
Sbjct: 357 QEALAKLTDATRSEIDGVMKELLAFFSFRFTGLSMPGSDCPIVTLKGEPFIEERL----F 412

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235
            L +R    +F Q N  +   + + +       +  LL ++ CG G   L LA     ++
Sbjct: 413 DLSFRVSPYAFFQVNTPVAEVLYKNIGDWLSLHENTLLLDVCCGTGTIGLCLASRVKFLI 472

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK-- 293
            V+I   ++E AR N  AN + N + +   +++    + +  +  RL         +   
Sbjct: 473 GVDIEASAIEDARLNAEANGIKNCEFICSPAEKVMADLLKREDIRRLDGSVALVVEYDHI 532

Query: 294 TIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPD-SLCRDLSILS------------- 336
            + VDPPRSGL    +   +    I   +Y+SCNP  S   +   L              
Sbjct: 533 VVIVDPPRSGLHKDIIPACRKCTAITELIYVSCNPTGSFVENTGSLCVEHFDFVVTLCCQ 592

Query: 337 -------TTHTIERLALFDQFPYTRHMECGVLL 362
                        +    D FP+T H E   L 
Sbjct: 593 PNRRLPGDPFVAIKSQPVDLFPFTEHCELMTLF 625


>gi|242221160|ref|XP_002476334.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724415|gb|EED78459.1| predicted protein [Postia placenta Mad-698-R]
          Length = 445

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/409 (19%), Positives = 139/409 (33%), Gaps = 97/409 (23%)

Query: 3   GTLL-IDQYEQQLAEKVDRLRQM------MLAFQVPNLQIFRSEP--IHYRMRAEFH--- 50
           G    +  YE+QL  K D + +       +    VP + I    P    YR +   H   
Sbjct: 85  GCQYQMLSYEKQLDLKRDVVVKAYEHFSDLSPSSVPTVPITIGSPLQYGYRTKITPHFDA 144

Query: 51  ---------------IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR 95
                          I +  D +        T++ M I+     +  +N           
Sbjct: 145 PPKKLQKSADKPLVTIENKPDWVKIGFNQIGTRQVMDIEDCPIATPTLNE---------- 194

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
             P LR  + +  +L   SDQA  + +          E  +                   
Sbjct: 195 ALPPLRKNIIEHAFLQPSSDQAAASELMSSTNTGHTLEKHV------------------- 235

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG---- 211
               +   +  V ER+        +  I  SF Q N  + + +  +V  A          
Sbjct: 236 ---CVTDHKATVRERVGDN----TFEYIAGSFFQNNNSVLLPLTSYVRDAIFAHHPSGPT 288

Query: 212 ------DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVR 263
                  L++ YCG+G F++ LAR F +V  +E+++ S+  A  N   N +  +    + 
Sbjct: 289 APPRPTHLVDAYCGSGLFAITLARSFQKVAGIELSEDSIRCATRNAQLNDIPPDQCSFMS 348

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYI 321
             +          ++F R             + +DPPR G D   +  +  +    ++Y+
Sbjct: 349 GDAANI---FATVQDFPR---------DQTVLIIDPPRKGTDAKFIDQLLEFQGALVVYV 396

Query: 322 SCNPDSLCRDLSIL--------STTHTIERLALFDQFPYTRHMECGVLL 362
           SCN  +  RD+  +           + +E L  FD FP T H+E   +L
Sbjct: 397 SCNVHTQARDVGTILRKSEARGGRRYVMESLVGFDLFPQTAHVESVAVL 445


>gi|127511735|ref|YP_001092932.1| 23S rRNA methyluridine methyltransferase [Shewanella loihica PV-4]
 gi|167012646|sp|A3QB25|RUMB_SHELP RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
 gi|126637030|gb|ABO22673.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Shewanella loihica
           PV-4]
          Length = 379

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 121/350 (34%), Gaps = 34/350 (9%)

Query: 32  NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDY-FMPGSLL-------- 82
            L         +R +A+  +          +     +     D    P  +         
Sbjct: 44  WLPPVVGPESGFRNKAKMVVLGAAHQPILGLVSPSGEAVSLCDCSLYPQDMQQLLHRLEA 103

Query: 83  -INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
            +    I      + +  L+  L     +  +     V     + +    RE    L + 
Sbjct: 104 FVRQAGIPPYRVDKAKGELKFILLTRSQVRGEYMLRFVMR-SEQAIPRIERELPRLLAEH 162

Query: 142 LHARKYQIQLIGRANKTKICLDRD--YVDE--RLTVAGRTLIYRQIENSFTQPNAGINVH 197
              +   + L        I    +  ++ E  RL      +       SF Q +  +   
Sbjct: 163 PEIKVVSVNLQPV--HMAILEGEEEIFLTEATRLEEEFNGVPLYIRPKSFFQTHPEVAAK 220

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +       T+ +    + +L+CG G F L  A     +  +EI   ++  A+ +     +
Sbjct: 221 LYLSARKWTRELAPTSIWDLFCGVGGFGLHCASKEVALTGIEIEAEAIACAKMSAETLGL 280

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--A 314
           + V+   + S  F    R E              + + I V+PPR G+ +A    +   A
Sbjct: 281 DKVRFTALDSTSFASDSRGEE-------------KPELIIVNPPRRGIGEALCHSLSEFA 327

Query: 315 YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
              ILY SCNP +L +DL  +S  + + ++ LFD FP+T H E  V+L R
Sbjct: 328 PKAILYSSCNPKTLAKDLHCIS-GYRVTKVQLFDMFPHTDHFEVLVMLQR 376


>gi|72162326|ref|YP_289983.1| 23S rRNA methyltransferase/RumA [Thermobifida fusca YX]
 gi|71916058|gb|AAZ55960.1| 23S rRNA methyltransferase/RumA [Thermobifida fusca YX]
          Length = 419

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 130/365 (35%), Gaps = 52/365 (14%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI------FRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           + Q   K   + + +      + ++         + + +R R  F +  DG      +  
Sbjct: 91  DAQRRLKAQVVAEQLRRIAGIDREVAVEELPGTPDGLGWRTRVRFAVTPDG---TVGLRR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            ++     +DY       I+ L +            R          + +   +VT+   
Sbjct: 148 HRSHSIEPVDYCPLAHPGIDRLNVPRKTW-------RNAAEIEVAAAAGTGDTLVTVTPA 200

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R                L A    + ++ R+   ++   R      +T       +    
Sbjct: 201 RTGTPE-----------LPALDSPVTVLRRSRNGRVQPPR--GRHGVTENAAGRRWWVSA 247

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVLAVEIA 240
            +F Q +      +   VL A     G   L+LYCG G F+  L        RV  VE  
Sbjct: 248 GAFWQIHPAAAETLTGAVLDALDPQPGQTALDLYCGVGLFAGALGAAVGPQGRVFGVESG 307

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +V  AR+N+      ++  V+++  +    +RR               R   +  DPP
Sbjct: 308 AEAVRDARHNLR-----DLPQVQITRADVATHLRR-----------WTPPRIDLVVADPP 351

Query: 301 RSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           RSG+    V  + A     I Y+SC+P +  RDL++ +   + ++ L  FD FP T H+E
Sbjct: 352 RSGMGADVVRRLAALRPQRIAYVSCDPATFARDLAVFAEHGYRMDGLRAFDAFPMTHHVE 411

Query: 358 CGVLL 362
           C  +L
Sbjct: 412 CVGVL 416


>gi|296235980|ref|XP_002763130.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 1
           [Callithrix jacchus]
          Length = 504

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 83/431 (19%), Positives = 151/431 (35%), Gaps = 96/431 (22%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++            VP  +        I  S  I  YR 
Sbjct: 95  SYEEQLKVKFEAQKKILQRLESYIQMLNGVDVTTAVPKSERLSCLLHPIIPSPVINGYRN 154

Query: 46  RAEFHI-WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK- 103
           ++ F +      +   + +   T     I   +  + L N            E  LR   
Sbjct: 155 KSTFSVNRGPDGNPKTVGYYLGTWRGGNI-VCVQSNHLKNIPEKHSQVAQYYEIFLRQSP 213

Query: 104 ------------LFQIDYLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDA-------- 141
                         ++   T+      AI+TL   +L  +  R     +++         
Sbjct: 214 MEPCLVFHEGGYWRELIVRTNSQGHTMAIITLHPQKLSQEELRGQKEIVKEFFIKGPGAA 273

Query: 142 --LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
             L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N    
Sbjct: 274 CDLTSLYFQESTMTRCSHQQSPFELLFGEPYIFEELL----SLKIRISPDAFFQINTAGA 329

Query: 196 VHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
             ML   +    G+  D  LL++ CG G   L LA+H  +VL +E+ + +VE AR+  A 
Sbjct: 330 E-MLYRTVGELAGVNSDTILLDICCGTGVIGLSLAQHTSQVLGIELVEQAVEDARWTAAY 388

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV- 312
           N + N +     +++    + + +E            +     V+P R+GL    V  + 
Sbjct: 389 NGITNSEFHTGRAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVVQAIR 438

Query: 313 --QAYPHILYISC-----------------NPDSLCRDLSILSTTHTIERLALFDQFPYT 353
             +A   ++++SC                 NP        +L     +++    D FP+T
Sbjct: 439 NCRAIRRLVFVSCKLHGETTRNVIELCCPPNPA-----KKLLGEPFLLQQAVPVDLFPHT 493

Query: 354 RHMECGVLLVR 364
            H E  +L  R
Sbjct: 494 PHCELVLLFSR 504


>gi|47223267|emb|CAF98651.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 764

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 132/429 (30%), Gaps = 88/429 (20%)

Query: 9   QYEQQLAEKVDRLRQMM--------------------LAFQVPNLQIFRSEPI-HYRMRA 47
            YE+QL  K  +  +++                         P L I  S     YR ++
Sbjct: 17  SYEEQLELKQKQQERILCQLCGYLSDDFQPQAPSHLRNKLTFPLLPIRPSPVRDGYRNKS 76

Query: 48  EFHI--WHDGDDLYHIMF-DQQTKERMRIDY------FMPGSLLINALMIEMMATIRLEP 98
            F +    DG+      +     K  +                L+     + +    LEP
Sbjct: 77  TFSVNRGMDGNPKTVGFYIGTGKKANIVCVNGDHLLNMPEKHKLVARCYQDFIRLSPLEP 136

Query: 99  LL----RAKLFQIDYLTSQSDQAIVTLIYHRL-LDDAWRECAIR---------------L 138
            L         +I   T++    +  + +H   L                         L
Sbjct: 137 CLLFHSGGHWREITVRTNREGHTMAIVYFHPQTLSPQEIAVHKADLVDYFTLGPGSVCQL 196

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
                      +     +  ++   + ++ E +     +  +R   ++F Q N      +
Sbjct: 197 DSLFFQESTMTRTTHEDSPYQLLHGQPHIYEEVL----SFRFRISADAFFQVNQAAAEVL 252

Query: 199 LEWVLAATKGIQ---------GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
                                G LL++ CG G F +  +   DRV+ VE+ + +VE A +
Sbjct: 253 YSTARDLCVPHPSVQGDRTRVGTLLDVCCGTGAFGITTSPRVDRVVGVELMEQAVEDAHH 312

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N + N V N + +   ++     +  +          I         V+P R+GL    V
Sbjct: 313 NASLNRVLNCEFIPGRAEVVLPGLVSQ----------IGCRGSVAAVVNPARAGLHHKVV 362

Query: 310 GMVQAYP---HILYISCNPDSLC-RDLSILSTTHTIER-----------LALFDQFPYTR 354
             ++  P    ++Y+SC PD    R+   L      ++               D FP+T 
Sbjct: 363 RALRNQPDIRRLVYVSCKPDGEAMRNFRELCCAPDPQKKLTGEAFSPSLALPVDMFPHTA 422

Query: 355 HMECGVLLV 363
           H E  +L  
Sbjct: 423 HCELVILFE 431


>gi|149921243|ref|ZP_01909699.1| RNA methyltransferase [Plesiocystis pacifica SIR-1]
 gi|149817903|gb|EDM77365.1| RNA methyltransferase [Plesiocystis pacifica SIR-1]
          Length = 482

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 148/371 (39%), Gaps = 41/371 (11%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
            Q   K   +   +    V   +   S  P+ YR RA  H       L    + Q++   
Sbjct: 105 AQAKLKAKIVEGQLRRLPVVVAESLPSPSPLGYRRRARVHYRKTAAGLELGFYGQRSHAI 164

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL----IYHRL 126
           +           ++  + ++ A  +        L +   +   S+ + V L    + H  
Sbjct: 165 VDCATCPVLDPALDWAVQQVRAWAQ-------WLPERGEVVGLSNGSEVVLGLPGVRHDP 217

Query: 127 -LDDAWRECAIRLRDALHARKYQ----IQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
            L+ A R      +D   + + +    + +  R  + ++ + R +++  L   G T    
Sbjct: 218 ELEAAIRAVLGEPKDGEDSEESKEPVLLGVQLRGGRERVGVGRTHLE--LDGDGPTPPVS 275

Query: 182 QIENSFTQPNAGINVHMLEWVLAATK--GIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           Q   +F+Q  A  N +++E V A  +  G    +LEL+ G GNFS VLAR    V AV+ 
Sbjct: 276 QGPFTFSQAQAAQNRNLVEHVAARVRESGRDARVLELHAGVGNFSRVLARSAKAVWAVDG 335

Query: 240 AKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            + ++   +       +  N K  R  ++              L  +     R+  + +D
Sbjct: 336 DREAIANLQRTAERWGLRINAK--RGQAERL------------LAKLATSGRRYDVVVLD 381

Query: 299 PPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYT 353
           PPRSG+ +A    + +     ++Y+SC+P +L RDL++L    +   +  L +FD  P T
Sbjct: 382 PPRSGIGEAAARDLLSVVRDRVVYVSCDPATLARDLAVLLAEGSGLELADLRVFDMMPMT 441

Query: 354 RHMECGVLLVR 364
             +E    L R
Sbjct: 442 PEVEVVATLNR 452


>gi|291408093|ref|XP_002720421.1| PREDICTED: TRM2 tRNA methyltransferase 2 homolog B isoform 2
           [Oryctolagus cuniculus]
          Length = 459

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 133/372 (35%), Gaps = 67/372 (18%)

Query: 42  HYRMRAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMA 92
            YR ++ F +    D       Y++   +       +   +         +       + 
Sbjct: 106 GYRNKSTFSVNRGPDGNPKTVGYYLGTWRDGNVVCVQSSHLKNIPEKHNQVAQYYEVFLR 165

Query: 93  TIRLEPLL----RAKLFQIDYLTSQSDQAIVTLIYHRLL---------DDAWRECAIRLR 139
              LEP L         ++   T+     +  + +H             +A +E  +R  
Sbjct: 166 QSPLEPCLLFHEGGHWRELTVRTNHQGHTMAIVTFHPQELSQEELCVQKEAIKEFFLRGP 225

Query: 140 DA---LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
            A   L +  +Q   + R +  +    +     Y+ E L      L  R   ++F Q N 
Sbjct: 226 GAVCDLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEGLL----GLKIRISPDAFFQVNT 281

Query: 193 GINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                ML   +    G+  +  LL++ CG G   L LA+H  +VL +E+ + +VE AR+ 
Sbjct: 282 AGAE-MLYQTVGELSGVNANTILLDICCGTGAIGLSLAQHASQVLGIELVEQAVEDARWT 340

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            A N + N +     +++    + + +E            +     V+PPR+GL    V 
Sbjct: 341 AAFNGITNCEFHAGRAEKILPWLLKSKE----------GVQPVVAVVNPPRAGLHHRVVQ 390

Query: 311 MVQAYPHI---LYISCN---------------PDSLCRDLSILSTTHTIERLALFDQFPY 352
            ++    I   +++SC                PDS  +   +L     + +    D FP+
Sbjct: 391 AIRNCRAIRTLVFVSCKLHGETTRNITELCCPPDSAKK---LLGEPFVLRQAVPVDLFPH 447

Query: 353 TRHMECGVLLVR 364
           T H E  +L  R
Sbjct: 448 TAHCELALLCTR 459


>gi|10434333|dbj|BAB14223.1| unnamed protein product [Homo sapiens]
          Length = 504

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 152/425 (35%), Gaps = 84/425 (19%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++            VP  +        I  S  I  YR 
Sbjct: 95  SYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVPKSERLSCLLHPIIPSPVINGYRN 154

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRL 96
           ++ F +    D       +++   +       +   +         +       +    L
Sbjct: 155 KSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPL 214

Query: 97  EPLLRAK----LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA--------- 141
           EP L         ++   T+   + +  + +H  +L  +        +++          
Sbjct: 215 EPCLVFHEGGYWRELTVRTNSQGRTMAIITFHPQKLSQEELHVQKEIVKEFFIRGPGAAC 274

Query: 142 -LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N     
Sbjct: 275 GLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINTAGAE 330

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            ML   +    G+  D  LL++ CG G   L LA+H  RVL +E+ + +VE AR+  A N
Sbjct: 331 -MLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFN 389

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N +     +++    + + +E            +     V+P R+GL    +  ++ 
Sbjct: 390 GITNSEFHTGQAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVIQAIRN 439

Query: 315 YPHI---LYISC--------NPDSLCRDL----SILSTTHTIERLALFDQFPYTRHMECG 359
           +  I   +++SC        N   LC        +L     +++    D FP+T H E  
Sbjct: 440 FRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELV 499

Query: 360 VLLVR 364
           +L  R
Sbjct: 500 LLFTR 504


>gi|197101097|ref|NP_001124606.1| tRNA (uracil-5-)-methyltransferase homolog [Pongo abelii]
 gi|75071000|sp|Q5RFM7|TRM2_PONAB RecName: Full=tRNA (uracil-5-)-methyltransferase homolog; AltName:
           Full=TRM2 homolog
 gi|55725126|emb|CAH89430.1| hypothetical protein [Pongo abelii]
          Length = 486

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 152/425 (35%), Gaps = 84/425 (19%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++            VP  +        I  S  I  YR 
Sbjct: 77  SYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVPKSERLSCLLHPIIPSPVINGYRN 136

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRL 96
           ++ F +    D       +++   +       +   +         +       +    L
Sbjct: 137 KSTFSVNRGPDGNPKTVGFYLGTWRDGNMVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPL 196

Query: 97  EPLLRAK----LFQIDYLTSQSDQAIVTLIYHRLL---------DDAWRECAIRLRDA-- 141
           EP L         ++   T+     +  + +H             +  +E  IR   A  
Sbjct: 197 EPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQNLSQEEFHVQKEIVKEFFIRGPGAAC 256

Query: 142 -LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N     
Sbjct: 257 DLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINTAGAE 312

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            ML   +    G+  D  LL++ CG G   L L++H  RVL +E+ + +VE AR+  A N
Sbjct: 313 -MLYRTVGELTGVNSDTILLDICCGTGVIGLSLSQHTSRVLGIELVEQAVEDARWTAAFN 371

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N +     +++    + + +E            +     V+P R+GL    +  ++ 
Sbjct: 372 GITNSEFHTGRAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVIQAIRN 421

Query: 315 YPHI---LYISC--------NPDSLCRDL----SILSTTHTIERLALFDQFPYTRHMECG 359
           +  I   +++SC        N   LC        +L     ++++   D FP+T H E  
Sbjct: 422 FRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQVVPVDLFPHTPHCELV 481

Query: 360 VLLVR 364
           +L  R
Sbjct: 482 LLFTR 486


>gi|189055144|dbj|BAG38128.1| unnamed protein product [Homo sapiens]
          Length = 504

 Score =  176 bits (446), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 151/425 (35%), Gaps = 84/425 (19%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++            VP  +        I  S  I  YR 
Sbjct: 95  SYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVPKSERLSCLLHPIIPSPVINGYRN 154

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRL 96
           ++ F +    D       +++   +       +   +         +       +    L
Sbjct: 155 KSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPL 214

Query: 97  EPLLRAK----LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA--------- 141
           EP L         ++   T+     +  + +H  +L  +        +++          
Sbjct: 215 EPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKLSQEELHVQKEIVKEFFIRGPGAAC 274

Query: 142 -LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N     
Sbjct: 275 GLTSLYFQESTMARCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINTAGAE 330

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            ML   +    G+  D  LL++ CG G   L LA+H  RVL +E+ + +VE AR+  A N
Sbjct: 331 -MLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFN 389

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N +     +++    + + +E            +     V+P R+GL    +  ++ 
Sbjct: 390 GITNSEFHTGQAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVIQAIRN 439

Query: 315 YPHI---LYISC--------NPDSLCRDL----SILSTTHTIERLALFDQFPYTRHMECG 359
           +  I   +++SC        N   LC        +L     +++    D FP+T H E  
Sbjct: 440 FRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELV 499

Query: 360 VLLVR 364
           +L  R
Sbjct: 500 LLFTR 504


>gi|229820435|ref|YP_002881961.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333]
 gi|229566348|gb|ACQ80199.1| (Uracil-5)-methyltransferase [Beutenbergia cavernae DSM 12333]
          Length = 405

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 131/381 (34%), Gaps = 83/381 (21%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
            G L       QL  K + LR  +         +  R+ P       +  R R E  +  
Sbjct: 85  GGELAHVALPAQLRWKEEVLRDALRRIGHLEADVTVRAAPGDAESGGLGTRTRVELTVAP 144

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL---FQIDYL 110
           DG      M   ++   + ++                +  +R    LR +     ++D +
Sbjct: 145 DGRP---GMHRHRSHVVLPLNDVPLA-----------VDALREHDALRRRWEPGSRLDLV 190

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
                  +V L                                  +   +  DR  V ER
Sbjct: 191 AGSEGAPLVLL----------------------------------DGAPVRGDRRTVRER 216

Query: 171 LTVAG-RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
           + +   R   YR   + F Q +      ++E VL A +   G+ +L+LY G G F+L LA
Sbjct: 217 VELGDGRAWRYRVAGSGFWQVHRAAPTVLVEAVLDAAQPQAGERVLDLYSGAGLFTLPLA 276

Query: 229 RHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  +V AVE    +V  AR N+       V +   S  +   A             
Sbjct: 277 DAVGADGQVAAVEGDPAAVRDARRNLHDRG--QVDLHGGSVADVLDAGV----------- 323

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIE 342
                    + +DPPR+G     V  V  +    I+Y++C+P +L RDL + +   + + 
Sbjct: 324 ---GAGADLVILDPPRAGAGRDVVEAVTGRRPRRIVYVACDPAALARDLRLAADAGYALT 380

Query: 343 RLALFDQFPYTRHMECGVLLV 363
            L   D FP+T H+E   +L 
Sbjct: 381 SLDAVDLFPHTHHIEALAVLE 401


>gi|308234194|ref|ZP_07664931.1| 23S rRNA m(5)U-1939 methyltransferase [Atopobium vaginae DSM 15829]
 gi|328944452|ref|ZP_08241914.1| hypothetical protein HMPREF0091_11139 [Atopobium vaginae DSM 15829]
 gi|327491036|gb|EGF22813.1| hypothetical protein HMPREF0091_11139 [Atopobium vaginae DSM 15829]
          Length = 609

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 77/478 (16%), Positives = 132/478 (27%), Gaps = 124/478 (25%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---------------------------------F 28
               L   Y +QL  K   +R++                                    F
Sbjct: 59  GCEWLNIPYSEQLMRKNKYMRELFEPLVTQQGKSCADLLRSIVPMKCTKDRAPHNMPRCF 118

Query: 29  QVPNLQIFRSEPIHYRMRA-------EFHIWHDGDDLYHIMFDQQTKERMRIDYFM---P 78
           +      F   P  +  RA       + +    G       F+  T   +  D+     P
Sbjct: 119 RHKVATPFAPLPESFASRAPKSNSKVQTNARMSGIAC--GFFEPGTHHIIPCDFCPSEVP 176

Query: 79  GSLLI--------NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           G+  I          L I+         +LR  + +     ++    IVT   +      
Sbjct: 177 GARKILNFIAKDAARLNIKAYNENTQIGILRHAILRFSRSCNEIMLVIVTRTRN---FAQ 233

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENS 186
            +     +  A       +Q +   N T   L       +   ++        +     S
Sbjct: 234 KKLLVQDILSAYPHITTVVQNVNPKN-TNAMLGSYNVVLFGSGKIHDKLLGCTFEIGPVS 292

Query: 187 FTQPNAGINVHMLEWVLA------------------------------------------ 204
           F Q N      + +  +                                           
Sbjct: 293 FFQTNPEQTEILYQTAIDGIKRICNTGKSDCDTLSYVSHGASIDSKRLDTSGLEHAHGKA 352

Query: 205 ------ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
                         +++ YCG G   + +A       V+  +  + S+E A+ N   NH+
Sbjct: 353 QQVTPEQADKHTIRIMDAYCGCGTIGICVASQIKNAVVIGFDQVEDSIERAKKNRRLNHL 412

Query: 257 -NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA- 314
                     +  F Q                   RF+ I +DPPR+G     +    + 
Sbjct: 413 KTRCVYSCEDATRFMQDFAYA---------SNGVSRFEAIIMDPPRAGSTPEFIKAAASL 463

Query: 315 -YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
               I YISCNP +  RDL+      +++E +   D FP+T H E   LL R+    H
Sbjct: 464 RPKCIAYISCNPQTQVRDLAEFYRCGYSVESITPVDMFPHTPHTESVCLLTRQNVKEH 521


>gi|323180215|gb|EFZ65767.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Escherichia coli 1180]
          Length = 160

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 15/170 (8%)

Query: 198 MLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           M+   L       +  +L+L+CG GNF+L LA+    V+ VE     VE  + N   N +
Sbjct: 1   MVARALEWLDVQPEDRVLDLFCGMGNFTLPLAKQAASVVGVEGVPALVEKGQQNARLNGL 60

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            NV     + +E             +         F  + +DP R+G       +++  P
Sbjct: 61  QNVTFYHENLEE------------DVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEP 108

Query: 317 -HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             I+Y+SCNP +L RD  ++L   +TI RLA+ D FP+T H+E  VL  R
Sbjct: 109 IRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 158


>gi|20149688|ref|NP_079193.2| tRNA (uracil-5-)-methyltransferase homolog isoform a [Homo sapiens]
 gi|269784676|ref|NP_001161442.1| tRNA (uracil-5-)-methyltransferase homolog isoform a [Homo sapiens]
 gi|269784680|ref|NP_001161444.1| tRNA (uracil-5-)-methyltransferase homolog isoform a [Homo sapiens]
 gi|74762656|sp|Q96GJ1|TRM2_HUMAN RecName: Full=tRNA (uracil-5-)-methyltransferase homolog; AltName:
           Full=TRM2 homolog
 gi|14495658|gb|AAH09437.1| TRMT2B protein [Homo sapiens]
 gi|18042937|gb|AAH20116.1| TRMT2B protein [Homo sapiens]
 gi|34783456|gb|AAH34272.1| TRM2 tRNA methyltransferase 2 homolog B (S. cerevisiae) [Homo
           sapiens]
 gi|57208528|emb|CAI42997.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|57208598|emb|CAI42155.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|57210112|emb|CAI42657.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|119623236|gb|EAX02831.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens]
 gi|119623241|gb|EAX02836.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens]
 gi|119623243|gb|EAX02838.1| chromosome X open reading frame 34, isoform CRA_a [Homo sapiens]
          Length = 504

 Score =  175 bits (445), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 151/425 (35%), Gaps = 84/425 (19%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++            VP  +        I  S  I  YR 
Sbjct: 95  SYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVPKSERLSCLLHPIIPSPVINGYRN 154

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRL 96
           ++ F +    D       +++   +       +   +         +       +    L
Sbjct: 155 KSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPL 214

Query: 97  EPLLRAK----LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA--------- 141
           EP L         ++   T+     +  + +H  +L  +        +++          
Sbjct: 215 EPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKLSQEELHVQKEIVKEFFIRGPGAAC 274

Query: 142 -LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N     
Sbjct: 275 GLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINTAGAE 330

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            ML   +    G+  D  LL++ CG G   L LA+H  RVL +E+ + +VE AR+  A N
Sbjct: 331 -MLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFN 389

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N +     +++    + + +E            +     V+P R+GL    +  ++ 
Sbjct: 390 GITNSEFHTGQAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVIQAIRN 439

Query: 315 YPHI---LYISC--------NPDSLCRDL----SILSTTHTIERLALFDQFPYTRHMECG 359
           +  I   +++SC        N   LC        +L     +++    D FP+T H E  
Sbjct: 440 FRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELV 499

Query: 360 VLLVR 364
           +L  R
Sbjct: 500 LLFTR 504


>gi|239928435|ref|ZP_04685388.1| RNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 432

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 126/328 (38%), Gaps = 45/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ +  DG      +   ++ E   ID+ M  +  ++ L IE      ++     
Sbjct: 137 WRTRVQYAVTADG---RAGLRRHRSHEVEPIDHCMIAAEGVSELGIEKRDWTGMDS---- 189

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              +    T   D+ +V            R   + L   +      +++  R+ +     
Sbjct: 190 --VEAIAATGSQDRQVVLTP-----KPGCRLPLVELDRPV----SVLRIDERSGQVHRVH 238

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            R +V ER         +R     F Q +      ++  V+      +GD  L+LYCG G
Sbjct: 239 GRPFVRER----ADGRTHRVGGGGFWQVHPQAADTLVTAVMQGLLPRKGDTALDLYCGVG 294

Query: 222 NFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  LA        VL +E  + +VE AR+N+A      V+I +   +           
Sbjct: 295 LFAGALADRVGDQGAVLGIESGRRAVEDARHNLA--DFPRVRIEQGKVESVLPR------ 346

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL- 335
                           + +DPPR+G    TV  +       I Y++C+P +L RDL+   
Sbjct: 347 --------TGITEVDLVVLDPPRAGAGRKTVEHLSSLGARRIAYVACDPAALARDLAYFR 398

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + +  L +FD FP T H+EC  +L 
Sbjct: 399 DGGYRVRTLRVFDLFPMTHHVECVAILE 426


>gi|291436762|ref|ZP_06576152.1| RNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291339657|gb|EFE66613.1| RNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 448

 Score =  175 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 126/328 (38%), Gaps = 45/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ +  DG      +   ++ E   ID+ M  +  ++ L IE      ++     
Sbjct: 153 WRTRVQYAVTADG---RAGLRRHRSHEVEPIDHCMIAAEGVSELGIEKRDWTGMDS---- 205

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              +    T   D+ +V            R   + L   +      +++  R+ +     
Sbjct: 206 --VEAIAATGSQDRQVVLTP-----KPGCRLPLVELDRPV----SVLRIDERSGQVHRVH 254

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            R +V ER         +R     F Q +      ++  V+      +GD  L+LYCG G
Sbjct: 255 GRPFVRER----ADGRTHRVGGGGFWQVHPQAADTLVTAVMQGLLPRKGDTALDLYCGVG 310

Query: 222 NFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  LA        VL +E  + +VE AR+N+A      V+I +   +           
Sbjct: 311 LFAGALADRVGDQGAVLGIESGRRAVEDARHNLA--DFPRVRIEQGKVESVLPR------ 362

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL- 335
                           + +DPPR+G    TV  +       I Y++C+P +L RDL+   
Sbjct: 363 --------TGITEVDLVVLDPPRAGAGRKTVEHLSSLGARRIAYVACDPAALARDLAYFR 414

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + +  L +FD FP T H+EC  +L 
Sbjct: 415 DGGYRVRTLRVFDLFPMTHHVECVAILE 442


>gi|225684394|gb|EEH22678.1| tRNA(m5U54)methyltransferase [Paracoccidioides brasiliensis Pb03]
          Length = 573

 Score =  175 bits (444), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 140/406 (34%), Gaps = 65/406 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRAEFHIWH 53
              L +  YE QL  K   + +    F     ++          P    YR +   H   
Sbjct: 154 GCQLQMLPYEDQLKHKKRIVEKAYANFSGLLPELIPAALDTMGSPLQYGYRTKLTPHFPI 213

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
                  +  D +  E   I + + G   +  +    + T          + ++   + +
Sbjct: 214 PSRTRRSVDADGEKAEVPPIGFMLKGRRTVIDIEDCPLGT---------DIVRLGLKSER 264

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
              A    +Y R      RE   R+ ++ +A       +    +       +Y++E+  +
Sbjct: 265 KRVAENLHMYSRGATLLLRESTTRVYNSRNASPCPDHQLPDDEQVIRTEHPEYIEEKRCI 324

Query: 174 AGRT---------LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------------ 212
             +T           +      F Q N  I     +++     G                
Sbjct: 325 TDQTGTSFEYVDDYKFENKAGQFFQNNNSILTPFTQYIRDNALGPFSPSTTSSSTQPASK 384

Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              LL+ Y G+G F++ L+  F   L ++IA  S+EAAR N  AN++ N       +   
Sbjct: 385 IKYLLDAYSGSGLFTVTLSPLFLSSLGIDIAPQSIEAARKNARANNLPNTGFAAADAATI 444

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDS 327
            + +    E                + +DPPR G D+  +  +  Y    ++Y+SCN  +
Sbjct: 445 FKDVPYPPE-------------KTLLVIDPPRKGCDNNFLQQLLWYGPARVVYVSCNVHT 491

Query: 328 LCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLVR 364
             RD+ +L            + IE +  FD FP T H+E   +L +
Sbjct: 492 QARDVGVLVQGANVKGEEVRYEIESIKGFDFFPQTGHVEGVAILNK 537


>gi|302557928|ref|ZP_07310270.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302475546|gb|EFL38639.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 449

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 128/329 (38%), Gaps = 47/329 (14%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ +  DG      +   ++ E   ID+ M  +  ++ L IE      ++     
Sbjct: 154 WRTRVQYAVTADG---RAGLRRHRSHEVEPIDHCMIAAEGVSELGIEKRDWTGMDS---- 206

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-C 161
              +    T   D+ +V             +   RL      R   +  +   +      
Sbjct: 207 --VEAIAATGSQDRQVVL----------TPKPGARLPLVELDRPVSVMRVDERSGQLHRV 254

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             R +V ER         +R     F Q +      ++  V+      +G++ L+LYCG 
Sbjct: 255 HGRPFVRER----ADGRTHRVAGGGFWQVHPKAADTLVTAVMQGLLPRKGEMALDLYCGV 310

Query: 221 GNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           G F+  LA        VL +E  K +VE AR+N+A      V+I +              
Sbjct: 311 GLFAGALADRVGETGAVLGIESGKRAVEDARHNLA--DFPRVRIEQGKVDSVLPR----- 363

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
               + D+D+       + +DPPR+G    TV  +       I Y++C+P +L RDL+  
Sbjct: 364 --TGITDVDL-------VVLDPPRAGAGRKTVEHLSSLGARRIAYVACDPAALARDLAYF 414

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLV 363
               + +  L +FD FP T H+EC  +L 
Sbjct: 415 RDGGYRVRTLRVFDLFPMTHHVECVAILE 443


>gi|294658876|ref|XP_002770855.1| DEHA2F20042p [Debaryomyces hansenii CBS767]
 gi|202953455|emb|CAR66375.1| DEHA2F20042p [Debaryomyces hansenii]
          Length = 582

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 152/397 (38%), Gaps = 70/397 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQ--------MMLAFQVPNLQIFRSE-PIHYRMRAEFHIW 52
                +  YE+QL  K   +++        +   +      I  S     YR +   H  
Sbjct: 218 GCQFQMLHYEEQLKFKKAVIQRAYNFFFPRLFSKYNEDFGNIIESPMQYAYRTKLTPHYE 277

Query: 53  HDGDD----LYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106
             G        +I F+    TK+ + ++Y    S  +N  +    A +      R+KL +
Sbjct: 278 SSGGKGRGHDINIGFNHVNPTKQTVDVEYCPIASPAVNRALPSARANV------RSKLME 331

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--R 164
                + S +   +     LL D+ R                          ++CL+  +
Sbjct: 332 AIGNPNTSSKTRASRGATLLLRDSIRINHQ-----------------TGEYERVCLNSHK 374

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGNG 221
           + + E++       +++   + F Q N  I  H+L+++             +++ YCG+G
Sbjct: 375 NIITEKI----DDFVFQFPASEFFQNNNSILSHVLDYIRFQIHKKPNSFKYIVDTYCGSG 430

Query: 222 NFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHV---NNVKIVRMSSKEFTQAMRR 275
            F + L++      +V  +E+++ S+E A +N   N +     ++ +  ++     A+  
Sbjct: 431 FFGISLSKDIPEDGKVFGIEVSRLSIEHAVHNAKLNGLSVPERIQFIEGNA----NAIFT 486

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLS 333
            +EF     I     +   + +DP R G +   +  +  +    I+Y+SCN  +  RDL+
Sbjct: 487 NKEFINSGIIG----QDSIVIIDPSRKGSNKKFMEQLLEFKPKLIIYVSCNVFTQARDLA 542

Query: 334 ILST-------THTIERLALFDQFPYTRHMECGVLLV 363
                       + I+ +  FD FP T+H+E   +L 
Sbjct: 543 DFDDLQSEHNCRYKIQDIVGFDFFPQTKHVESIAILE 579


>gi|297624387|ref|YP_003705821.1| (Uracil-5)-methyltransferase [Truepera radiovictrix DSM 17093]
 gi|297165567|gb|ADI15278.1| (Uracil-5)-methyltransferase [Truepera radiovictrix DSM 17093]
          Length = 424

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 124/371 (33%), Gaps = 40/371 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN------LQIFRSEPIHYRMRAEFHIWHDG---DDLYH 60
           Y  QL  K + ++  +     P         +    P  YR   +  +   G   D    
Sbjct: 76  YAHQLELKREVVKDALSRALKPTELPSVLPVVAAPAPWGYRHAVQPAVARGGPLTDGAAL 135

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
                ++ E + +      +  +N     + A + L   +R   F+ +    ++   ++ 
Sbjct: 136 GYRRPESHEVVPLGCDPVATPALNGAWSRVQA-LGLPKGVRELAFRTND-AGETLLCLIA 193

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIG----RANKTKICLDRDYVDERLTVAGR 176
               R    A  E      +                   + T+       + +R      
Sbjct: 194 SASARNYLSAAHELLGEAPEGGRVVGVAYAPFDPRGRFRSGTERLAGARVIRQRYGPFDL 253

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           +         F QPN      +    LA   G     L+LY G G   + LA  F+RV+A
Sbjct: 254 S----VSATGFAQPNPAAASRLYAE-LARWAGEGRFALDLYAGGGAIGMHLAASFERVVA 308

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E+ + SV     + A   + N++  +  ++        E                  I 
Sbjct: 309 LELDRSSVVRGARDAARLGLANLEFRQGDARRLGALPEAEL-----------------IC 351

Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYT 353
           V+PPR+GL   T   + A     +LY+SC+  +  RD + L      + RL  FD +P T
Sbjct: 352 VNPPRAGLAKGTRAALSASAATRLLYVSCDVATFSRDAAQLCAAGWRLTRLEPFDFYPQT 411

Query: 354 RHMECGVLLVR 364
            H+E      R
Sbjct: 412 HHLELLAAFER 422


>gi|295394400|ref|ZP_06804624.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972752|gb|EFG48603.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 379

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/396 (17%), Positives = 142/396 (35%), Gaps = 55/396 (13%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAF------QVPN---LQIFRSEPIHYRMRAEFHIWHDGD 56
           +  + E Q       + +++  F      + P    L         +R++ +  +    +
Sbjct: 1   MSTRVESQ----QAEVAELLAPFWATGETETPEQTWLPPVVGPESGFRIKVKMVVAGTTE 56

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL-------LRAKLFQIDY 109
                + D      + +         I+ ++  +   I+   +        + +L  +  
Sbjct: 57  HPTLGILDDDG-AGIDLTDCPLYPESIHTVIRTLPWLIKRAQVPPYNVRKRKGQLKHVIV 115

Query: 110 LTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARK-YQIQLIGRANKTKICLDRD-- 165
                ++ +V  +          +E      DA    + + +        T I    +  
Sbjct: 116 TAGDDNRVMVRFVLASQSALPRIQEHLPAFMDACEGVEVFSVSANINPVHTAIIEGDEEI 175

Query: 166 --YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT---------KGIQGDLL 214
             +  + L V    +  +    SF Q N  +   + E V              G    + 
Sbjct: 176 ALHGPQWLPVTQGRVQLKVRPQSFVQTNTVVASGLYEQVREWVSKAQAPATSHGRDLRVW 235

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L+CG G F+L +A    +V  VE+A  +VE+AR     N +  +  +   + ++++   
Sbjct: 236 DLFCGVGGFALHVAGPGRQVTGVEVAPAAVESAREVAGENDL-GLNFICADAAQWSRQ-- 292

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332
                         +     + V+PPR G+ +   G V+    PH++Y SCNP +L  DL
Sbjct: 293 -------------QTQVPDVLIVNPPRRGMGEDMAGWVEQSGIPHVIYSSCNPRTLAADL 339

Query: 333 SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           + +   + IE+    D FP+T H E  V L R+  G
Sbjct: 340 AKM-PGYRIEQARFLDMFPHTSHAEVVVRLARQAGG 374


>gi|328950985|ref|YP_004368320.1| (Uracil-5)-methyltransferase [Marinithermus hydrothermalis DSM
           14884]
 gi|328451309|gb|AEB12210.1| (Uracil-5)-methyltransferase [Marinithermus hydrothermalis DSM
           14884]
          Length = 408

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 143/365 (39%), Gaps = 42/365 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL  K   +R+ +                 EP+ YR  A+F +   G   Y +    
Sbjct: 76  YEAQLPVKQGFVREALARLAGLEATLEPIAPSPEPMGYRTAAQFALHPLGGLAYRV---P 132

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + E +R       +  +    + ++ T  L  ++   L      +    +  V LI  +
Sbjct: 133 GSHELVRAHTDPLLAPPLQEA-LSLLNTWPLANVVEVVLRG----SLHEGRVQVGLIGGK 187

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRAN---KTKICLDRDYVDERLTVAGRTLIYRQ 182
                +R  A  L     A  +   L  R       K      ++ E    A   ++   
Sbjct: 188 AR--MFRTVAKGLVREGIAGVWWGALDPRGRFRGPVKHLAGAAHLLE----AFGEVLASV 241

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              SF Q N      + +   A   G +   +ELY G G  S  LA  FD ++AVE+++ 
Sbjct: 242 DVVSFAQVNPRAAARLYQEAAALVHGGR-RAVELYAGGGVLSFHLAAAFDEIVAVELSRA 300

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +++  + +     + NV+  R  ++E  +                       + VDPPR+
Sbjct: 301 AIQKGQADARRLGLPNVRFHRGDARELVRFAPA-----------------DLVAVDPPRA 343

Query: 303 GLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           GL    V  +++A PH ILYISC+P +  RD+  L +  + +     +D +P+T H+E  
Sbjct: 344 GLAPEVVRTLLEARPHQILYISCDPATWARDVKRLVAGGYRLRFARPYDFYPFTHHVEVL 403

Query: 360 VLLVR 364
            LLVR
Sbjct: 404 SLLVR 408


>gi|46199290|ref|YP_004957.1| putative tRNA (uracil-5-)-methyltransferase [Thermus thermophilus
           HB27]
 gi|51316687|sp|Q72IZ3|Y988_THET2 RecName: Full=Uncharacterized RNA methyltransferase TT_C0988
 gi|46196915|gb|AAS81330.1| putative tRNA (uracil-5-)-methyltransferase [Thermus thermophilus
           HB27]
          Length = 406

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 142/364 (39%), Gaps = 45/364 (12%)

Query: 10  YEQQLAEKVDRLRQMM---LAFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL  K   +R  +      + P   I  S  P+ YR  A++     G   Y +    
Sbjct: 75  YEAQLPLKEALVRDALERVAKLEAPLAPIRPSPRPLAYRTAAQYARHPLGGLAYRL---P 131

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++ E  R++         + L+ E +A       L     +   L     +  V L    
Sbjct: 132 ESHELHRLEK--------DPLLAEPLAWAFDVLKLWPLPVEEVALRGSLLEGKVLLGLVG 183

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIG----RANKTKICLDRDYVDERLTVAGRTLIYR 181
            + +A +  A  L     A     +       R   T +  +R      L  A   L   
Sbjct: 184 GVPEALKRPAKALVQEGFAGVVWAEPSPKGRFRGRVTPLAGER-----TLLEAFGPLKAT 238

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
               SF+Q N      +LE       G +   LELY G+G FSL+L+  ++ V+AVEI+K
Sbjct: 239 VSVESFSQVNPLAAGALLEEARTLVFGGR-RALELYAGSGLFSLLLSPRYEEVVAVEISK 297

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V     +       NV+ +RM +++                       F  + VDPPR
Sbjct: 298 EAVRRGEMDRKRLGAENVRFLRMDARKAEALGA-----------------FDLVVVDPPR 340

Query: 302 SGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
           +GL       +++A P  ILY+SC+P +  RD+  L    + +     +D FP+T H+E 
Sbjct: 341 AGLPPEVRAYLLRARPREILYVSCDPATWARDVGALVQGGYRLAFARPYDFFPFTHHVEV 400

Query: 359 GVLL 362
             LL
Sbjct: 401 LSLL 404


>gi|239982797|ref|ZP_04705321.1| RNA methyltransferase [Streptomyces albus J1074]
 gi|291454644|ref|ZP_06594034.1| RNA methyltransferase [Streptomyces albus J1074]
 gi|291357593|gb|EFE84495.1| RNA methyltransferase [Streptomyces albus J1074]
          Length = 433

 Score =  174 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 129/341 (37%), Gaps = 45/341 (13%)

Query: 30  VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE 89
            P  ++   E   +R R ++ I  DG      +   ++ E   +++ M  +  ++ L IE
Sbjct: 125 APGDKLPAGEVPAWRTRVQYAIDADG---RAGLRRHRSHEVEPVEHCMIAAEGVSELGIE 181

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
                 +E        +    +   D+ +V            R   + L   +      +
Sbjct: 182 QRDWSGMES------VEAIAASGSGDRQVVLTPR-----PGARLPLVELDRPV----SVL 226

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           ++  R         R +V ER         +R     F Q +      ++E V+      
Sbjct: 227 RVDERDGGVHRVHGRAFVRER----ADDHTWRVGNGGFWQVHPKAADTLVEAVMQGLLPR 282

Query: 210 QGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +GD  L+LYCG G F+  LA        VL +E+ K +VE AR+N+     + V++ +  
Sbjct: 283 KGDTALDLYCGVGLFAGALADRVGDKGAVLGIEVTKRAVEDARHNLK--DFDRVRVEQGK 340

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
            ++                          I +DPPR+G    TV  +       I Y++C
Sbjct: 341 VEQVLPR--------------TGITETDLIVLDPPRAGAGKQTVARLCSLGARRIAYVAC 386

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           +P +L RDL       + +  +  FD FP T H+EC  +L 
Sbjct: 387 DPAALARDLGYFREGGYRVRVMRAFDLFPMTHHVECVAILE 427


>gi|156034222|ref|XP_001585530.1| hypothetical protein SS1G_13414 [Sclerotinia sclerotiorum 1980]
 gi|154698817|gb|EDN98555.1| hypothetical protein SS1G_13414 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 606

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/412 (17%), Positives = 134/412 (32%), Gaps = 74/412 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--------IFRSEPIHYR--------- 44
                +  Y  QL  K   + +    F     +        I       YR         
Sbjct: 185 GCQFQMLDYSTQLQHKKTIVEKAYKNFSQLPPELVPAIQDTIGSPLQYEYRTKLTPHFDG 244

Query: 45  ---MRAEFHIWHDGDDLYH-----IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL 96
               R+  H  +D    +          +  +  + I+    G+  +   M      +  
Sbjct: 245 PPGYRSRVHRRNDNKAAFEKVPDIGFMQKGKRATLDIEDCPIGTDAVRMGMKTERKRVAD 304

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
           E  L         L  +S + I         D  ++E                       
Sbjct: 305 E--LHKYQRGATILLRESTKRI------YKGDPEYQEDME------TPPNTIKVTTPEYT 350

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD 212
             K C+  +  +   T    + ++  I  SF Q N  I      ++ +  L        D
Sbjct: 351 DLKTCITDNKGE--STEYIDSFLFTSIAGSFFQNNNSILPVFTQYIRDHALPPPGSYSPD 408

Query: 213 L------LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRM 264
           L      ++ Y G+G F++ L+  F     ++I+  S+ +AR N   N ++      +  
Sbjct: 409 LPKIQYLIDAYSGSGLFTITLSSLFKSSTGIDISDASIISARRNAELNKLDASRCSFMAA 468

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYIS 322
            + +  + +   R+                + +DPPR G D++ +  +  +    ++Y+S
Sbjct: 469 DAPKLFKQVTYPRD-------------ETVVVIDPPRKGCDESFLSQLLKFGPRRVVYVS 515

Query: 323 CNPDSLCRDLSILSTT------HTIERLALFDQFPYTRHMECGVLLVRKPSG 368
           CN  +  RD+ +L         + IE L  FD FP T H+E   +L R   G
Sbjct: 516 CNVHTQARDVGVLVKGGENGVRYEIESLRGFDFFPQTGHVEGVAVLNRVDEG 567


>gi|55981322|ref|YP_144619.1| RNA methyltransferase [Thermus thermophilus HB8]
 gi|55772735|dbj|BAD71176.1| probable RNA methyltransferase [Thermus thermophilus HB8]
          Length = 406

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 142/364 (39%), Gaps = 45/364 (12%)

Query: 10  YEQQLAEKVDRLRQMM---LAFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL  K   +R  +      + P   I  S  P+ YR  A++     G   Y +    
Sbjct: 75  YETQLPLKEALVRDALERVAKLEAPLAPIRPSPRPLAYRTAAQYARHPLGGLAYRL---P 131

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++ E  R++         + L+ E +A       L     +   L     +  V L    
Sbjct: 132 ESHELHRLEK--------DPLLAEPLAWAFDVLKLWPLPVEEVALRGSLLEGKVLLGLVG 183

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIG----RANKTKICLDRDYVDERLTVAGRTLIYR 181
            + +A +  A  L     A     +       R   T +  +R      L  A   L   
Sbjct: 184 GVPEALKRPAKALVQEGFAGVVWAEPSPKGRFRGRVTPLAGER-----TLLEAFGPLKAT 238

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
               SF+Q N      +LE       G +   LELY G+G FSL+L+  ++ V+AVEI+K
Sbjct: 239 VSVESFSQVNPLAAGALLEEARTLVFGGR-RALELYAGSGLFSLLLSPRYEEVVAVEISK 297

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V     +       NV+ +RM +++                       F  + VDPPR
Sbjct: 298 EAVRRGEMDRKRLGAENVRFLRMDARKAEALGA-----------------FDLVVVDPPR 340

Query: 302 SGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
           +GL       +++A P  ILY+SC+P +  RD+  L    + +     +D FP+T H+E 
Sbjct: 341 AGLPPEVRAYLLRARPREILYVSCDPATWARDVGALVQGGYRLAFARPYDFFPFTHHVEV 400

Query: 359 GVLL 362
             LL
Sbjct: 401 LSLL 404


>gi|29828931|ref|NP_823565.1| RNA methyltransferase [Streptomyces avermitilis MA-4680]
 gi|50401776|sp|Q93HB4|Y2389_STRAW RecName: Full=Uncharacterized RNA methyltransferase SAV_2389
 gi|15824109|dbj|BAB69275.1| putative methyltransferase [Streptomyces avermitilis]
 gi|29606036|dbj|BAC70100.1| putative RNA methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 433

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/329 (22%), Positives = 127/329 (38%), Gaps = 47/329 (14%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ +  DG+     +   ++ E   I++ M  +  ++ L IE            +
Sbjct: 138 WRTRVQYAVDADGN---AGLRRHRSHEVEPIEHCMIAAPGVSELGIEERDW--------S 186

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-C 161
            +  +D + +   Q  + ++  R           RL      +   +  +   +      
Sbjct: 187 GMESVDAIAATGSQDRMVILEPRP--------GARLPLVELDKPVSVMRVEEKDGGIHRV 238

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             R +V ER         YR     F Q +      +++ V+      +GD+ L+LYCG 
Sbjct: 239 HGRAFVRER----ADGRTYRVGSGGFWQVHPMAADTLVKAVMQGLLPRKGDMALDLYCGV 294

Query: 221 GNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           G F+  LA        VL +E  K +VE AR+N+AA     V+I +   +          
Sbjct: 295 GLFAGALADRLGDKGAVLGIESGKRAVEDARHNLAA--FERVRIEQGKVEAVLPR----- 347

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                            I +DPPR+G    TV  +       I Y++C+P +L RDL   
Sbjct: 348 ---------TGITEVDLIVLDPPRAGAGKKTVEQLVSLGARKIAYVACDPAALARDLGYF 398

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLV 363
               + +  L  FD FP T H+EC  +L 
Sbjct: 399 RDGGYKVRTLRAFDLFPMTHHVECVAILE 427


>gi|190344507|gb|EDK36191.2| hypothetical protein PGUG_00289 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 568

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 141/396 (35%), Gaps = 79/396 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--------IFRSE-PIHYRMRA----E 48
                +  Y++QL  K   +++    F  P+          +  S     YR +      
Sbjct: 216 GCQFQMVSYDEQLKLKQATIQKAY-KFLFPDQPWSPDTFGMVVPSPLQYAYRSKLTPHYH 274

Query: 49  FHIWHDGDD---LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF 105
           F   +  +            + K  + I      +  + + + E+    +        + 
Sbjct: 275 FQRENFTNKTVPNIGFQHSSKDKGIVDIHECPLATSTVESALSEVREETQNSI-----MA 329

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
             +    Q    +                       L          G ++KT +   + 
Sbjct: 330 NYENEAKQKGATL----------------------FLRESLRINSQTGESSKTCLTDSKK 367

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              E++  +    I++   N F Q N+ I   ++++V  +       ++++ YCG+G F 
Sbjct: 368 VCTEKIGES----IFQFPANEFFQVNSSILPDVVDFVRYSMSSKGIRNIVDAYCGSGFFG 423

Query: 225 LVLARHFD--RVLAVEIAKPSVEAARYNIAANHVN---NVKIVRM------SSKEFTQAM 273
           + LA      +V+ +EI++ +++ A +N   N +    +V+ +          + F  A 
Sbjct: 424 ISLANDVKNGKVVGIEISRQAIKYATHNAKLNGLAVPQHVQFIEGTSNAIFKHESFLSAK 483

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRD 331
               E                + +DP R G D++ +  +  +    I+Y+SCN  S  RD
Sbjct: 484 LNPEE--------------TMVIIDPSRKGSDESFLQQLHEFGPKLIVYVSCNVFSQARD 529

Query: 332 LSIL---STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L      S  +T+  +  FD FP T+H+EC  +L R
Sbjct: 530 LQYFTAMSQKYTVHEVIGFDFFPQTKHVECVAVLER 565


>gi|322709830|gb|EFZ01405.1| tRNA (uracil-5-)-methyltransferase [Metarhizium anisopliae ARSEF
           23]
          Length = 574

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 137/410 (33%), Gaps = 82/410 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEPIHYRMRAEFHIWHDG 55
                +  Y +QL  K   L +    F       VP +Q     P+ Y  R +     DG
Sbjct: 185 GCQFQMLDYAEQLKLKKRVLDKAYRNFSNLPAELVPAIQDTIGSPLQYGYRTKLTPHFDG 244

Query: 56  DDLY-----------------HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98
              +                      +  +  + I+    G+  +       +   R   
Sbjct: 245 PPGFRPSKRKATKVSFESCPDIGFMQKGKRRVLDIEDCPIGTSAVR------LGMARERE 298

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            ++++        +     ++    HR   D+         DAL     + +        
Sbjct: 299 RMQSEFQNYHRGAT----ILLRENTHRYPKDSQDGDKPPKEDALSPYTARTE-------- 346

Query: 159 KICLDRDYVD---------ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                 D++D            T    +  +     SF Q N  I      +V       
Sbjct: 347 ----GDDFIDIKTCETDSKATTTEFIGSHTFTNPAGSFFQNNNSILPKFTAYVREHILPP 402

Query: 210 QGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIV 262
             +     L++ Y G+G F++ L+  F     ++IA  S+ +AR N + N +  +  K +
Sbjct: 403 PSNSPIRYLIDAYSGSGLFTITLSSVFQHSTGIDIAADSIASARNNASLNGLGEDRCKFI 462

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILY 320
              + E  +++    +                + +DPPR G D   +G ++      ILY
Sbjct: 463 AADAGELFKSVTYPAD-------------ETVVVLDPPRKGCDADFLGQLRTFGPKRILY 509

Query: 321 ISCNPDSLCRDLSILSTT------HTIERLALFDQFPYTRHMECGVLLVR 364
           +SCN  +  RD+ +L         + IE L  FD FP T H+E   +L R
Sbjct: 510 VSCNVHTQARDVGVLVRGEGDGARYDIESLVGFDFFPQTGHVEGVAILNR 559


>gi|297202920|ref|ZP_06920317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sviceus
           ATCC 29083]
 gi|297148247|gb|EDY59291.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sviceus
           ATCC 29083]
          Length = 442

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 129/329 (39%), Gaps = 47/329 (14%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ +  DG+     +   ++ E   I++ M  +  ++ L IE            +
Sbjct: 147 WRTRVQYAVDADGN---AGLRRHRSHEVEPIEHCMIAAPGVSELGIEERDW--------S 195

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-C 161
            +  ++ + +   Q  + ++  R           RL      +   +  +   +      
Sbjct: 196 GMASVEAIAATGSQDRMVILEPRP--------GARLPLVELDKPVSVMRVEEKDGGIHRV 247

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             R +V ER         +R     F Q +      +++ V+      +G++ L+LYCG 
Sbjct: 248 HGRAFVRER----ADGRTHRVGSGGFWQVHPQAADTLVKAVMQGLLPRKGEMALDLYCGV 303

Query: 221 GNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           G F+  LA        VL +E  K +VE AR+N+AA   + V+I +   +          
Sbjct: 304 GLFAGALADRLGDQGAVLGIESGKRAVEDARHNLAA--FDRVRIEQGKVEAVLPR----- 356

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                            I +DPPR+G    TV  +       I Y++C+P +L RDL   
Sbjct: 357 ---------TGITEVDLIVLDPPRAGAGRKTVQHLSSLGARRIAYVACDPAALARDLGYF 407

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLV 363
               + +  L +FD FP T H+EC  +L 
Sbjct: 408 RDGGYRVRTLRVFDLFPMTHHVECVAILE 436


>gi|294631901|ref|ZP_06710461.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. e14]
 gi|292835234|gb|EFF93583.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. e14]
          Length = 451

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 127/328 (38%), Gaps = 44/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ I  D    +  +   ++ E   I++ M  +  ++ L IE      +E     
Sbjct: 155 WRTRVQYAI--DPATGHAGLRRHRSHEVEPIEHCMIAAEGVSELGIEQRDWTGME----- 207

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +  I    SQ  Q I+T      L     +  +            +++  +        
Sbjct: 208 SVEAIAATGSQDRQVILTPRPGARLPLVELDKPV----------SVLRVDEKTGGVHRVH 257

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNG 221
            R +V ER         +R     F Q +      +++ V+      +GD+ L+LYCG G
Sbjct: 258 GRPFVRER----ADGRTHRVGAGGFWQVHPKAADTLVKAVMQGLLPRKGDMALDLYCGVG 313

Query: 222 NFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  LA        VL +E  K +V+ AR+N+A      V+I +   +           
Sbjct: 314 LFAGALADRIGEKGAVLGIESGKRAVQDARHNLA--DFPRVRIEQGKVESILPR------ 365

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL- 335
                           I +DPPR+G    TV  +   A   I Y++C+P +L RDL+   
Sbjct: 366 --------TGITEVDLIVLDPPRAGAGRQTVAHLTSLAARRIAYVACDPAALARDLAYFR 417

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + +  L  FD FP T H+EC  +L 
Sbjct: 418 EGGYRVRTLRAFDLFPMTHHVECVAILE 445


>gi|222085092|ref|YP_002543622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium
           radiobacter K84]
 gi|221722540|gb|ACM25696.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium
           radiobacter K84]
          Length = 416

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/355 (22%), Positives = 136/355 (38%), Gaps = 33/355 (9%)

Query: 15  AEKVDRLRQMML-AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           A K   +   +      P +    +     R R  F       D+       ++   + I
Sbjct: 90  AFKRQLVIDALRSKGLTPEVDDLIAAHPGERRRVVFAARKTEKDMLIGFNQAESHHIVAI 149

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +     S  I A +  + A +     + A+ F+I  L + +   +       L D   R 
Sbjct: 150 EECPIASPGIMAQLPAIRA-VGAALAINAEAFRISVLETLTGLDLAVDGIKGLSDKHRRS 208

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPN 191
               +       +  +        TK  +D   V             +      +FTQ  
Sbjct: 209 AIETVLALRGVGRVSLNGEVLVETTKPIIDFSGV-------------QISPPSGAFTQAT 255

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 M+E V A   G    + +L+ G+G FSL LAR   RV AVE  + ++ A  +  
Sbjct: 256 KAAEEAMVELV-ATHIGKAKRIADLFAGSGTFSLRLAR-IGRVHAVESEEKALAALDH-- 311

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           AA +   +K V +  ++     RR      LK+       +  +  DPPR+G +  T  +
Sbjct: 312 AARNTQGLKPVSIERRDL---FRRPLMAQELKN-------YDAVIFDPPRAGAEFQTKEL 361

Query: 312 VQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            ++    I+ ISCNP +L RDL+IL    + I ++   DQF +T H+E  V L +
Sbjct: 362 ARSVVKKIVAISCNPLTLARDLAILTEAGYRITKVTPIDQFLWTSHVEVVVALEK 416


>gi|149246690|ref|XP_001527770.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447724|gb|EDK42112.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 550

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 140/395 (35%), Gaps = 76/395 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-------NLQIFRSEPIHYRMRA--EFHIW 52
                +  YE QL  K   + +    F             I       YR +      + 
Sbjct: 199 GCQFQMLSYEDQLHYKQQLIAKAYKLFYPKLARDQSFGSVIGSPLQYAYRTKINPHCTLE 258

Query: 53  HDGDDLYHIMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
            +      I F     + ++ +++    ++ IN  + +       +  L           
Sbjct: 259 GNNKKCSTIGFQHVNNQGKVDVEHCPIATIEINDKLQQAREHYIGKKHL----------- 307

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-NKTKICLDRDYVDER 170
                                   + LR +L       +    A    K       V ER
Sbjct: 308 ----------------------TQLTLRQSLRVDHSTGEFYPTALEGQKTV-----VTER 340

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL---ELYCGNGNFSLVL 227
           +       +Y+   + F Q N  I   +L+++      +   ++   + YCG G F + L
Sbjct: 341 I----EDFVYQFENSCFFQNNNSILSMVLDYMRFHINLLDNKVVNIVDTYCGVGFFGIAL 396

Query: 228 ARHFD--RVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLK 283
           ++  D  +V  +E++  S++ A++N   N ++   VK +   + +       + + NR K
Sbjct: 397 SQLHDNVKVFGIEVSDSSIKYAQHNAKLNGLDQEKVKFILGDASKIFSNKEFKDDNNRFK 456

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILSTT--- 338
                      + +DP R G D+  +  +++  P  I+Y+SCN  +  RDL++       
Sbjct: 457 ----IKGDDSVVIIDPSRKGSDEQFLRQLLEFEPRMIIYVSCNVFTQARDLALFEKLQLQ 512

Query: 339 -------HTIERLALFDQFPYTRHMECGVLLVRKP 366
                  + +E++  FD FP T+H+E   +L +K 
Sbjct: 513 LHQNKKLYNVEQVTGFDFFPQTKHVESIAVLKKKN 547


>gi|148657992|ref|YP_001278197.1| (Uracil-5)-methyltransferase [Roseiflexus sp. RS-1]
 gi|148570102|gb|ABQ92247.1| (Uracil-5)-methyltransferase [Roseiflexus sp. RS-1]
          Length = 407

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 141/384 (36%), Gaps = 40/384 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQM----MLAFQVPNLQIFRSE-PIHYRMRAEFHIWHDGD 56
                  +Y  Q+A K   LR +    +    +  L +  S  P  YR R +F    +  
Sbjct: 37  GCAFQDREYPVQVAAKRTALRHLWEGDLPETLLTTLDVVASPNPFAYRTRMDFVASKE-- 94

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAK---LFQIDY 109
             + +    +    + +           A    M        L    LRA    L  +  
Sbjct: 95  -RFGLRRSGRFNYIIDLKECHLIPARAFAAARAMYDHAMRLGLPDYDLRAHAGFLRYVAV 153

Query: 110 LTSQSDQAIVTLIYHRLLDD---AWRECAIRLRDALHARKYQIQLIGRANKTKICLD--- 163
             S  D+ ++ LI     +    A +   +      +     +  +    +T I      
Sbjct: 154 RRSPDDEVLLALITAAPDEAGTYAGKVEQVAQAALEYDGVVGVHWLINPTRTDISFGETA 213

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGN 220
           R +    L +           N+F Q N  + + +LE V  A  G       L +LY G 
Sbjct: 214 RFWGRATLPMRVGAHTLDIGPNTFFQNNVWLLMPLLEAVRDAVAGEGERARALADLYGGV 273

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +L +A   D+++ VE  + SV  AR NIA     ++ IV+    +  +   R     
Sbjct: 274 GTIALFVADLADQIVCVESVEESVRLARENIARAGFEHIAIVKADVADALRERTR----- 328

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTT 338
                      F  +  DPPR+GL       +++  P  I+YISCNP +   D+ +L+  
Sbjct: 329 ---------GAFDIVIADPPRTGLGPDVCRELLRLRPQRIVYISCNPLTQRDDVRMLTEA 379

Query: 339 HTIERLALFDQFPYTRHMECGVLL 362
           + +  L  +D FP+T H+E   +L
Sbjct: 380 YRLTSLRGYDMFPHTPHLESLAVL 403


>gi|149181899|ref|ZP_01860387.1| RNA methyltransferase [Bacillus sp. SG-1]
 gi|148850338|gb|EDL64500.1| RNA methyltransferase [Bacillus sp. SG-1]
          Length = 398

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 126/327 (38%), Gaps = 42/327 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML--AFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDD 57
                   YE QL +K D +++ +    +    +   I    P  YR + EF    DG  
Sbjct: 90  GCVWQHLSYEGQLKQKTDHVKEEIASQGYDPALVLDTIGMDNPWRYRNKMEFTFAPDGSL 149

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
             H   + +  + + ++  +  S             +NA  ++       E LLR  + +
Sbjct: 150 GLHEQGNFR--KVISLETCLIASEEMVETAMEVANWVNAHGLKGYDKDAHEGLLRHLMVR 207

Query: 107 IDYLTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKT 158
             + T +    +  T      L++A  +   R+ +     K  + L         ++ KT
Sbjct: 208 QSFATGEIMLGLFATEAPESNLEEAVSDLVKRVEEKFPKVKSLLWLENRDWADRAQSEKT 267

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELY 217
            +   RD++ + +        +R   ++F Q N      +++  +   K  + + +++L+
Sbjct: 268 HVLAGRDFIYDEM----DGYRFRLWFDTFFQTNPVQAQKLVDLAVEMGKPKKTEKMIDLF 323

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G FSL  A     +  +EI + S+E+A+ N   N ++N   +   +++    +    
Sbjct: 324 CGVGTFSLPFANRVGELAGIEIVESSIESAKRNAEDNGISNTTFLAKDARKGIDQILESF 383

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                        R + + +DPPRSG 
Sbjct: 384 ------------GRPELLLLDPPRSGA 398


>gi|254392236|ref|ZP_05007422.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294815599|ref|ZP_06774242.1| Putative RNA methyltransferase [Streptomyces clavuligerus ATCC
           27064]
 gi|326443949|ref|ZP_08218683.1| putative RNA methyltransferase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705909|gb|EDY51721.1| RNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294328198|gb|EFG09841.1| Putative RNA methyltransferase [Streptomyces clavuligerus ATCC
           27064]
          Length = 448

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 133/341 (39%), Gaps = 45/341 (13%)

Query: 30  VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE 89
            P  ++   E   +R R ++ I  +G      +   ++ E   +D+ M  +  ++ L +E
Sbjct: 137 APGDKLPAGEVPAWRTRVQYAIDAEG---RAGLRKHRSHEVEPVDHCMIAAPGVSELGVE 193

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
                +L     A +  I    S   Q ++T +    L     +  +            +
Sbjct: 194 RRTWPQL-----ASVEAIAATGSGDRQVVLTPVPGGRLPLVELDKPV----------SVL 238

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           ++  R +       R +V ER         YR     F Q +      +++ V+      
Sbjct: 239 RVDERDDSVHRVHGRGFVRER----ADGRTYRVGAGGFWQVHPQAADTLVKAVMQGLMPR 294

Query: 210 QGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +G+  L+LYCG G F+  +A        VL +E +K +VE AR+N+    +  V+I +  
Sbjct: 295 KGETALDLYCGVGLFAGAIAERVGDEGAVLGIESSKRAVEDARHNLR--DLERVRIEQGK 352

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISC 323
            ++     R                    I +DPPR+G    TV  +   A   I Y++C
Sbjct: 353 VEQVLPRTRI--------------TSTDLIVLDPPRAGAGKRTVTHLASLAARRIAYVAC 398

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           +P +L RDL       +    L  FD FP T H+EC  +L 
Sbjct: 399 DPAALARDLGYFREAGYRPRTLRAFDLFPMTHHVECVAILE 439


>gi|119623237|gb|EAX02832.1| chromosome X open reading frame 34, isoform CRA_b [Homo sapiens]
          Length = 385

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/394 (18%), Positives = 143/394 (36%), Gaps = 67/394 (17%)

Query: 17  KVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL-----YHIMFDQQTK--- 68
           K +RL  ++    +P+  I       YR ++ F +    D       +++   +      
Sbjct: 13  KSERLSCLLHPI-IPSPVIN-----GYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVC 66

Query: 69  -ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK----LFQIDYLTSQSDQAIVTLIY 123
            +   +         +       +    LEP L         ++   T+     +  + +
Sbjct: 67  VQSNHLKNIPEKHSQVAQYYEVFLRQSPLEPCLVFHEGGYWRELTVRTNSQGHTMAIITF 126

Query: 124 H--RLLDDAWRECAIRLRDA----------LHARKYQIQLIGRANKTK----ICLDRDYV 167
           H  +L  +        +++           L +  +Q   + R +  +    +     Y+
Sbjct: 127 HPQKLSQEELHVQKEIVKEFFIRGPGAACGLTSLYFQESTMTRCSHQQSPYQLLFGEPYI 186

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL 225
            E L     +L  R   ++F Q N      ML   +    G+  D  LL++ CG G   L
Sbjct: 187 FEELL----SLKIRISPDAFFQINTAGAE-MLYRTVGELTGVNSDTILLDICCGTGVIGL 241

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA+H  RVL +E+ + +VE AR+  A N + N +     +++    + + +E       
Sbjct: 242 SLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKE------- 294

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NPDSLCRDL-- 332
                +     V+P R+GL    +  ++ +  I   +++SC        N   LC     
Sbjct: 295 ---DGQSIVAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDP 351

Query: 333 --SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
              +L     +++    D FP+T H E  +L  R
Sbjct: 352 AKKLLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 385


>gi|254384466|ref|ZP_04999807.1| RNA methyltransferase [Streptomyces sp. Mg1]
 gi|194343352|gb|EDX24318.1| RNA methyltransferase [Streptomyces sp. Mg1]
          Length = 443

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/328 (22%), Positives = 128/328 (39%), Gaps = 45/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R +F I  DG+     +   ++ +   ID+ M  +  ++ L IE     ++      
Sbjct: 148 WRTRVQFAIDEDGN---AGLRKHRSHDIELIDHCMIAAPGVSELGIEKQDWPQMAS---- 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              +    +  +D+ +V            R   + L   +      +++  +        
Sbjct: 201 --VEAIAASGSNDRQVVLTPR-----PGGRLPLVELDKPV----SVLRVEEKDGGVHRVH 249

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNG 221
            R +V ER         YR     F Q +      +++ V+      +G++ L+LYCG G
Sbjct: 250 GRPFVRER----ADGRTYRVGMGGFWQVHPQAADTLIKAVMQGLMPRKGEMALDLYCGVG 305

Query: 222 NFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  LA        VL +E  K +VE AR+N+       V+I +   +           
Sbjct: 306 IFAGALAERLGETGAVLGIESTKRAVEDARHNLE--DFPRVRIEQGKVEAI--------- 354

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336
              L    I       + +DPPR+G    TV  +       I Y++C+P +L RDL    
Sbjct: 355 ---LPKTGI--TECDLVVLDPPRAGAGKQTVRHIAGLSARRIAYVACDPAALARDLGYFK 409

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLV 363
              + +  L +FD FP T H+EC  +L 
Sbjct: 410 DHGYKVRTLRVFDLFPMTHHVECVAILE 437


>gi|302343363|ref|YP_003807892.1| RNA methyltransferase, TrmA family [Desulfarculus baarsii DSM 2075]
 gi|301639976|gb|ADK85298.1| RNA methyltransferase, TrmA family [Desulfarculus baarsii DSM 2075]
          Length = 433

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 129/376 (34%), Gaps = 40/376 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--IHYRMRAEFHIWHDGDDLY 59
              L+   Y  QL  K   L + +         +    P    +R R  F +        
Sbjct: 84  GCDLMHLDYAGQLEAKAQWLDRALGRLPGMPPAVAWPSPRQWGWRNRVRFQVR----GNR 139

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
              F +       +         I+  +  +   +         L  ++ L +  D    
Sbjct: 140 IGFFQRGGHYLEPLRDCPVAHPAISRFLAALAPEVTSGQ--HRSLAWVEVLANDDDGPFA 197

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-------LDRDYVDERLT 172
           T+               +L +A+            A  T++C        D    +  L 
Sbjct: 198 TMGVG---------AGAKLNNAMKRGLRLAATQAGAKMTRLCRGENLEQWDPGPDNGLLY 248

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHF 231
            +   L  R     F Q N G+N  ++  VL A   +  G+ L+L+ G GNF+L LA+  
Sbjct: 249 HSDGQLQLRAYPGLFCQVNLGLNQRLMGLVLEAAGQLPPGEALDLFAGGGNFALPLAQAG 308

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
            +V AVE    + +   +      ++  ++I+   + +    +                 
Sbjct: 309 WQVCAVEAQPQAAQVMLWQARRAELDERLEILWTQAADAVGRLTS------------SGR 356

Query: 291 RFKTIFVDPPRSGLDDATVG-MVQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFD 348
           RF  + +DPPR+G           A   + Y+SC+P +L RD   +L   +    L   D
Sbjct: 357 RFDLVVLDPPRAGAKGLMDQVAALAPKRVAYVSCHPAALARDAKELLGYGYAPVALHALD 416

Query: 349 QFPYTRHMECGVLLVR 364
            FP T H+E  ++L R
Sbjct: 417 MFPQTSHVEALLILDR 432


>gi|322698538|gb|EFY90307.1| tRNA (uracil-5-)-methyltransferase [Metarhizium acridum CQMa 102]
          Length = 569

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/410 (18%), Positives = 137/410 (33%), Gaps = 82/410 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEPIHYRMRAEFHIWHDG 55
                +  Y +QL  K   L +    F       VP +Q     P+ Y  R +     DG
Sbjct: 180 GCQFQMLDYVEQLRLKKRVLEKAYRNFSNLPSELVPAIQDTIGSPLQYGYRTKLTPHFDG 239

Query: 56  DDLY-----------------HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98
              +                      +  ++ + I+    G+  +       +   R   
Sbjct: 240 PPGFRPSKRKAAKVSFESCPDIGFMQKGKRKVLDIEDCPIGTSAVR------LGMARERE 293

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
            ++++        +     ++    HR   D+         DAL     + +        
Sbjct: 294 RMQSEFRNYHRGAT----ILLRENTHRYPKDSQDGDQPPKEDALPPYTARTE-------- 341

Query: 159 KICLDRDYVD---------ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                 D++D            T       +     SF Q N  I      +V       
Sbjct: 342 ----GDDFIDIKTCETDSKATTTEFIGNHTFTNPAGSFFQNNNSILPKFTAYVREHILPP 397

Query: 210 QGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIV 262
             +     L++ Y G+G F++ L+  F     ++IA  S+ +AR N + N +  +  + +
Sbjct: 398 PSNSPIRYLIDAYSGSGLFTITLSSVFQHSTGIDIAADSIASARNNASLNGLGEDRCQFI 457

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILY 320
              + E  +++    +                + +DPPR G D   +G ++      ILY
Sbjct: 458 AADAGELFKSVTYPAD-------------ETVVVLDPPRKGCDADFLGQLRTFGPKRILY 504

Query: 321 ISCNPDSLCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +SCN  +  RD+ IL         + IE L  FD FP T H+E   +L R
Sbjct: 505 VSCNVHTQARDVGILVRAEGDGARYDIESLVGFDFFPQTGHVEGVAILNR 554


>gi|146421938|ref|XP_001486912.1| hypothetical protein PGUG_00289 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 568

 Score =  173 bits (439), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/396 (17%), Positives = 141/396 (35%), Gaps = 79/396 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--------IFRSE-PIHYRMRA----E 48
                +  Y++QL  K   +++    F  P+          +  S     YR +      
Sbjct: 216 GCQFQMVSYDEQLKLKQATIQKAY-KFLFPDQPWSPDTFGMVVPSPLQYAYRSKLTPHYH 274

Query: 49  FHIWHDGDD---LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF 105
           F   +  +            + K  + I      +  + + + E+    +        + 
Sbjct: 275 FQRENFTNKTVPNIGFQHSSKDKGIVDIHECPLATSTVESALSEVREETQNSI-----MA 329

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
             +    Q    +                       L          G ++KT +   + 
Sbjct: 330 NYENEAKQKGATL----------------------FLRESLRINSQTGESSKTCLTDSKK 367

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
              E++  +    I++   N F Q N+ I   ++++V  +       ++++ YCG+G F 
Sbjct: 368 VCTEKIGES----IFQFPANEFFQVNSSILPDVVDFVRYSMSSKGIRNIVDAYCGSGFFG 423

Query: 225 LVLARHFD--RVLAVEIAKPSVEAARYNIAANHVN---NVKIVRM------SSKEFTQAM 273
           + LA      +V+ +EI++ +++ A +N   N +    +V+ +          + F  A 
Sbjct: 424 ISLANDVKNGKVVGIEISRQAIKYATHNAKLNGLAVPQHVQFIEGTSNAIFKHESFLSAK 483

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRD 331
               E                + +DP R G D++ +  +  +    I+Y+SCN  S  RD
Sbjct: 484 LNPEE--------------TMVIIDPSRKGSDESFLQQLHEFGPKLIVYVSCNVFSQARD 529

Query: 332 LSILS---TTHTIERLALFDQFPYTRHMECGVLLVR 364
           L   +     +T+  +  FD FP T+H+EC  +L R
Sbjct: 530 LQYFTAMLQKYTVHEVIGFDFFPQTKHVECVAVLER 565


>gi|269125957|ref|YP_003299327.1| deoxyribonuclease/rho motif-related TRAM [Thermomonospora curvata
           DSM 43183]
 gi|268310915|gb|ACY97289.1| deoxyribonuclease/rho motif-related TRAM [Thermomonospora curvata
           DSM 43183]
          Length = 449

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 140/377 (37%), Gaps = 50/377 (13%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI----------------FRSEPIHYRMRAEFHIWHD 54
             Q   K + + + +         +                 R + + +R R +F +  D
Sbjct: 97  PAQRRLKAEVISEQLARLAGIERAVVVEEVPDPHTGRDGAAGRGDGLGWRTRVQFAVRDD 156

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           G      +   ++ +   ID  +     + A+ IE         +          +++ +
Sbjct: 157 G---VVGLRRHRSHQIEPIDECLIAHPGVEAIGIERKRWPGAAGV-------EGVVSAGT 206

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTV 173
              +V L      + A R    R    +      ++L+      +    R  YV E    
Sbjct: 207 GDRVVALR-----ERAARSRGGRHSAKVPRLDVPVRLL---RGRQTPGGRVPYVREV--- 255

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD 232
                +++   + F Q + G    + + VLAA +   G++ L+LYCG G F+ VL     
Sbjct: 256 -AAGRLWQVSGSGFWQVHPGAAQTLADAVLAALEPRPGEIALDLYCGVGLFAGVLGERVG 314

Query: 233 R---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ VE    +V  AR+N+    + +V I R   +E    +   R  +R        
Sbjct: 315 PEGLVVGVEADPQAVRDARFNLR--DLPHVSIERGRVEEVIAELEFGR--SRPGGAREEG 370

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLAL 346
            R   + +DPPR+G     V  +   A   I Y+SC+  +L RDL+        ++ L  
Sbjct: 371 VRADVVVLDPPRTGAGRRVVERIAELAGRKIAYVSCDTATLARDLAYFGERGWRLQSLRA 430

Query: 347 FDQFPYTRHMECGVLLV 363
           FD FP T H+E    LV
Sbjct: 431 FDAFPMTHHVELLATLV 447


>gi|68481799|ref|XP_715141.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
 gi|46436751|gb|EAK96108.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
          Length = 588

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 135/392 (34%), Gaps = 77/392 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---------PNLQIFRSEP--IHYRMRAEFH 50
              L +  YE QL  K   +++    F            N  I    P    YR +   H
Sbjct: 244 GCQLQMLSYEDQLKYKQSVIQRAYKCFYPQIFNSFKEMDNFGIVNESPLQYSYRTKLTPH 303

Query: 51  IWHDGDDLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
                     + F     + R+ I      +  IN ++ E                    
Sbjct: 304 FAASNKVNQKLGFQHVNNRGRLDITNCPIATPEINDILQESRDNY--------------- 348

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
                            +  +     + LR +L      I     A K+     +  V  
Sbjct: 349 -----------------IGKSTPLTQLTLRQSLR-----INQDTGAFKSVALEGQKKV-- 384

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ---GDLLELYCGNGNFSLV 226
            +T      +++   N F Q N  I   +L+++            +L++ YCG G F + 
Sbjct: 385 -ITEKVEDFLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIA 443

Query: 227 LARHFD---RVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRREREFNR 281
           L++ F+   +V  +E+ + +++ A +N   N ++   V+ V   +             N 
Sbjct: 444 LSKSFNENTKVFGIELVEQAIKYANHNAKLNGLDPERVQFVSGDASNIFN--------NE 495

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-- 337
                  S +   + VDP R G +++ +  +  +    ++Y+SCN  S  RDL+      
Sbjct: 496 NFKKSGISGKNSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQ 555

Query: 338 -----THTIERLALFDQFPYTRHMECGVLLVR 364
                 + ++ +  FD FP T+H+E   +L +
Sbjct: 556 QNTNVKYKVKDVMGFDFFPQTKHVESIAILEK 587


>gi|302554686|ref|ZP_07307028.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472304|gb|EFL35397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces
           viridochromogenes DSM 40736]
          Length = 442

 Score =  173 bits (438), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 126/329 (38%), Gaps = 47/329 (14%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ +  DG      +   ++ E   ID+ M  +  ++ L IE      ++     
Sbjct: 147 WRTRVQYAVTADG---RAGLRRHRSHEVEPIDHCMIAAEGVSELGIEKRVWTGMDS---- 199

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKIC 161
              +    T   D+ +V             +   RL    L      +++  R+      
Sbjct: 200 --VEAIAATGSQDRQVVL----------TPKPGARLPLVELDRPVSVLRVDERSGGVHRV 247

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             R +V ER         +R     F Q +      ++  V+      +GD+ L+LYCG 
Sbjct: 248 HGRPFVRER----ADGRTHRVGGGGFWQVHPKSADTLVTAVMQGLLPRKGDMALDLYCGV 303

Query: 221 GNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           G F+  LA        VL +E  K +VE AR+N+A    + V+I +   +          
Sbjct: 304 GLFAGALADRVGDQGAVLGIESGKRAVEDARHNLA--EFDRVRIEQGKVESVLPR----- 356

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335
                            I +DPPR+G    TV  + +     I Y++C+P +L RDL   
Sbjct: 357 ---------TGITEVDLIVLDPPRAGAGRKTVEHLTSLRARRIAYVACDPAALARDLGYF 407

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLV 363
               + +  L  FD FP T H+EC  +L 
Sbjct: 408 RDGGYRVRTLRAFDLFPMTHHVECVAILE 436


>gi|329940064|ref|ZP_08289346.1| tRNA methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329300890|gb|EGG44786.1| tRNA methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 433

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 123/329 (37%), Gaps = 47/329 (14%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R  + +   G      +   ++ E   I++ +  +  ++ L IE      ++     
Sbjct: 138 WRTRVSYAVDPSG---RAGLRRHRSHEVEPIEHCLIAAPGVSELGIERRQWPGMDS---- 190

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKIC 161
              +    T   D+ +V             +   RL    L      +++  R+      
Sbjct: 191 --VEAIAATGSQDRQVVL----------TPKPGARLPLVELDRPVSVLRVDERSGGVHRV 238

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
             R +V ER         +R     F Q +      ++  V+      +GD  L+LYCG 
Sbjct: 239 HGRPFVRER----ADDRTHRVGAGGFWQVHPKAADTLVAAVMQGLLPRKGDTALDLYCGV 294

Query: 221 GNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           G F+  LA        VL +E  K +VE AR+N+A    + V+I +   +          
Sbjct: 295 GLFAGALADRVGEKGAVLGIESGKRAVEDARHNLA--EFDRVRIEQGKVEAALPR----- 347

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                            + +DPPR+G    TV  +       I Y++C+P +L RDL+  
Sbjct: 348 ---------TGITEADLVVLDPPRAGAGRKTVAHLTTLGARRIAYVACDPAALARDLAYF 398

Query: 336 -STTHTIERLALFDQFPYTRHMECGVLLV 363
               + +  L  FD FP T H+EC  +L 
Sbjct: 399 REGGYRVRSLRAFDLFPMTHHVECVAVLE 427


>gi|117928603|ref|YP_873154.1| RNA methyltransferase [Acidothermus cellulolyticus 11B]
 gi|117649066|gb|ABK53168.1| 23S rRNA m(5)U-1939 methyltransferase [Acidothermus cellulolyticus
           11B]
          Length = 397

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 132/367 (35%), Gaps = 71/367 (19%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSE---PIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y++QL  K   + + +        ++        + +R R +F +    D         +
Sbjct: 92  YQRQL--KSTVVGEQLTRLAGLQREVAVEPTGTDLGWRTRVQFAV---DDQGRAGFHPWR 146

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           +   + ++        + AL IE        P  RA    +   T               
Sbjct: 147 SHAVLPVERCAIAHPAVEALDIEGRRW----PAARAVEAAVGVATGSHSV---------- 192

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
                                   L+ R++  +  +     D RL    R   +R    +
Sbjct: 193 ------------------------LVTRSDGRRRLIG----DRRLIEVVRGRRFRLRPTT 224

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAKP 242
           F Q +      ++  +++      G+ +L+LY G G F+  LA       RV+AVE  + 
Sbjct: 225 FWQVHPAAADLLIGAIVSGVTPAPGERVLDLYAGAGLFAAFLAESVGSSGRVVAVEGDRG 284

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +   A  N+A    + V++ R    EF  A     E            RF  +  DPPR+
Sbjct: 285 AAADASVNLA--EFDTVEVRRADVAEFLAAAADRGE------------RFDIVVADPPRT 330

Query: 303 GLDD-ATVGMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECG 359
           GL       +    P  I Y++C+P +L RDL++ S   +    +  FD FP T H+EC 
Sbjct: 331 GLGPPNARRICALRPRAIGYVACDPAALARDLAVFSEAGYQAVSVRAFDIFPQTHHVECV 390

Query: 360 VLLVRKP 366
            +L  +P
Sbjct: 391 AILRPEP 397


>gi|152977898|ref|YP_001343527.1| 23S rRNA methyluridine methyltransferase [Actinobacillus
           succinogenes 130Z]
 gi|150839621|gb|ABR73592.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinobacillus
           succinogenes 130Z]
          Length = 383

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 138/391 (35%), Gaps = 45/391 (11%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDD 57
           +S   L   Y  QL +K   L+Q +       L+    F+S    +R +A+  +    + 
Sbjct: 12  ISCRWLETPYADQLTQKQTHLQQQISILDQSRLEWIPPFQSAQSGFRNKAKMVVNGTVER 71

Query: 58  LYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLT 111
               + +++ +  +      +      I +++ + +    L P      + +L  I    
Sbjct: 72  PILGIINERNQPADLTDCPLYPARFAEIFSVLKDFIGRAGLVPYNIAKQKGELKYILLTE 131

Query: 112 SQSDQAIVTLIYHR------LLDDAWRECAIRLRD-ALHARKYQIQLIGRANKTK-ICLD 163
           S+++Q ++     R      L+       + ++ D A+     Q Q        K I L 
Sbjct: 132 SRANQTLMLRFVLRSETKLPLMRRELAGLSTKIPDLAVVTANIQPQHAAILEGQKEIFLT 191

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGN 222
              V E        +        F Q N  +   +        K +    L +L+CG G 
Sbjct: 192 EQQVLEE---RFNGIPLFIRPQGFFQTNPAVAEGLYGTAQNWVKNLPVQRLWDLFCGVGG 248

Query: 223 FSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           F L  A           +  +EI+  ++ +A  +     + NV    + +  F       
Sbjct: 249 FGLHCAAALQANTPDVALTGIEISPSAIYSAALSAEKCGLKNVSFQSLDAANFAL----- 303

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSI 334
                         +   + V+PPR G+       +       +LY SCN  ++  DL  
Sbjct: 304 ----------NQDDKPDLVIVNPPRRGIGKPLAEFLNNLRPQFLLYSSCNAVTMGSDLQS 353

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L+  + + ++ LFD FP+T H E   LL  K
Sbjct: 354 LTH-YQMRKIRLFDMFPHTAHYEVLTLLTLK 383


>gi|320008078|gb|ADW02928.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces flavogriseus
           ATCC 33331]
          Length = 452

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 124/328 (37%), Gaps = 45/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ +  DG      +   ++ E   ID+ M  +  ++ L IE     ++     A
Sbjct: 157 WRTRVQYAVDADG---LVGLRKHRSHEVQPIDHCMIAAPGVSELGIEKQDWPQM-----A 208

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +  I    S   Q I+T      L     +  +            +++  +        
Sbjct: 209 TVEAISATGSHDRQVILTPREGGRLPLVELDKPV----------SVMRVDEKDGGVHRVH 258

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            R +V ER         YR     F Q +      ++  V+      + D  L+LYCG G
Sbjct: 259 GRAFVRER----ADDRTYRVGSGGFWQVHPQAADTLVRAVMQGLLPRKNDTALDLYCGVG 314

Query: 222 NFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  + +       VL +E  K +VE AR+N+    ++ V+I      +          
Sbjct: 315 LFAGAIGQRIGEKGAVLGIESGKRAVEDARHNLK--DLDRVRIEHGKVDQVLPR------ 366

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL- 335
                           I +DPPR+G   ATV  +       I Y++C+P +L RD++   
Sbjct: 367 --------TGITECDLIVLDPPRAGAGKATVKQLVALGARRIAYVACDPAALARDIAYFR 418

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + +  L  FD FP T H+EC  +L 
Sbjct: 419 DGGYRVRTLRAFDLFPMTHHVECVAILE 446


>gi|53729021|ref|ZP_00134290.2| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 132

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 83/131 (63%), Positives = 102/131 (77%)

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           LA EI+K SV++A+YNI  N ++N++I+RMS++EFTQAM   REFNRLK ID+ +Y   T
Sbjct: 2   LATEISKSSVQSAQYNIEQNGIDNLQIIRMSAEEFTQAMNGVREFNRLKGIDLKAYDCNT 61

Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
           IFVDPPR+GLD  T+ MVQAY  ILYISCNP +L  +L  LS TH IER ALFDQFPYT 
Sbjct: 62  IFVDPPRAGLDQDTLNMVQAYERILYISCNPYTLAENLRQLSLTHRIERAALFDQFPYTH 121

Query: 355 HMECGVLLVRK 365
           H+E GV L+RK
Sbjct: 122 HVESGVWLIRK 132


>gi|328885599|emb|CCA58838.1| RNA methyltransferase, TrmA family [Streptomyces venezuelae ATCC
           10712]
          Length = 442

 Score =  172 bits (437), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/328 (22%), Positives = 120/328 (36%), Gaps = 45/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ I  +G   +  +   ++ E   ID+ M  +  ++ L IE      +  +   
Sbjct: 147 WRTRVQYAIDAEG---HAGLRKHRSHEVEVIDHCMIAAQGVSELGIEKRTWENMASV--- 200

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
                    S S    V L           E               +++           
Sbjct: 201 ----EAIAASGSGDRQVVLTPKPGGRLPLVELDK--------PVSVLRVDENDGGVHRVH 248

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            R +V ER         YR     F Q +      ++  V+      +GD  L+LYCG G
Sbjct: 249 GRAFVRER----ADERTYRVGNGGFWQVHPKAAQTLMLAVMQGLTPRKGDTALDLYCGVG 304

Query: 222 NFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  LA        VL +E  K +VE AR+N+AA     V+I +   +           
Sbjct: 305 LFAGALADRVGEKGAVLGIESGKRAVEDARHNLAA--FPRVRIEQGKVESVLPR------ 356

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                           I +DPPR+G    TV  +       I Y++C+P +L RD+S  +
Sbjct: 357 --------TGITEVDLIVLDPPRAGAGKQTVHHLASLGARRIAYVACDPAALARDISYFA 408

Query: 337 T-THTIERLALFDQFPYTRHMECGVLLV 363
              + +  L  FD FP T H+EC  +L 
Sbjct: 409 ERGYKVRTLRAFDLFPMTHHVECVAILE 436


>gi|302541981|ref|ZP_07294323.1| putative tRNA (Uracil-5-)-methyltransferase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302459599|gb|EFL22692.1| putative tRNA (Uracil-5-)-methyltransferase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 447

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 140/380 (36%), Gaps = 57/380 (15%)

Query: 12  QQLAEKVDRLRQMMLAFQ---------------VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
            Q   K + + + +                    P  ++ R E   +R R ++ +   G 
Sbjct: 101 AQRRLKAEVITEQLQRLAGLTPEDARWDGTVEPAPGDKVARGEVPAWRTRLQYAVDEQGR 160

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +   ++ E   +D+ +  +  +  L IE     ++E      +  I    S   Q
Sbjct: 161 P---GLRRHRSHEVEPVDHCLIAAPGVTELGIEKREWPQIE-----SIEAIAATGSSDRQ 212

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            ++T      L     +  + +     +R  + Q +           R +V ER      
Sbjct: 213 VVLTPRPGARLPIVELDRPVSVLRIAESRGRERQRLVH-----RVHGRPFVRER----AA 263

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR-- 233
              +R  E  F Q +      ++E V+      +GD  L+LYCG G F+  L        
Sbjct: 264 DRTWRVGEGGFWQVHPKAADLLVEAVMQGLMPRKGDTALDLYCGVGLFAGALGERVGERG 323

Query: 234 -VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            VL +E +K + E AR+N+    ++ V+I     ++                        
Sbjct: 324 AVLGIESSKRAAEDARHNLQ--DLDRVRIEHGKVEQVLPR--------------TGITEA 367

Query: 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             I +DPPR+G    TV  +       I Y++C+P +L RDL+      +   RL  FD 
Sbjct: 368 DLIVLDPPRAGAGKETVAHLASLGARRIAYVACDPAALARDLAYFHDAGYAPRRLRAFDL 427

Query: 350 FPYTRHMECGVLLVRKPSGW 369
           FP T H+EC  +L   P+G 
Sbjct: 428 FPVTHHVECVAVLE--PAGK 445


>gi|256832632|ref|YP_003161359.1| deoxyribonuclease/rho motif-related TRAM [Jonesia denitrificans DSM
           20603]
 gi|256686163|gb|ACV09056.1| deoxyribonuclease/rho motif-related TRAM [Jonesia denitrificans DSM
           20603]
          Length = 430

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 74/378 (19%), Positives = 137/378 (36%), Gaps = 72/378 (19%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL---------QIFRSEP---IHYRMRAEFHIWHDGDDLYH 60
           Q   K   +   M                 +I          +R R E       D    
Sbjct: 99  QREWKRQVVADQMARLGGVQFDGDVEAAPWEIHPDNDQPGWGWRTRFEVVA---NDKGRA 155

Query: 61  IMFDQQTKERMRIDYFMPGSLLINAL-MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF  ++ + + + +    +     L  ++ + + + EP +R     ++ +       +V
Sbjct: 156 GMFRPRSHDVVPLTHMPLATAQAQELAQVQGVWSRQWEPHMR-----LEVVAPTDGPGVV 210

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
                             L +    RK  + +   A +        +V E +   GR   
Sbjct: 211 ------------------LGNGEPLRKGHVDVRPNARR--------FVTEIVHAYGRPYR 244

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKG--IQGDLLELYCGNGNFSLVLARHF---DRV 234
           YR   N F Q +      ++  VL A       G +L+ YCG+G F++ LA        V
Sbjct: 245 YRVAANGFWQVHRDAPEVLVTAVLDALGDGFEGGRILDAYCGSGLFTVPLAAMAGEDGEV 304

Query: 235 LAVEIAKPSVEAARYNIAANH----VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           +A+E    +V+ AR N+  N        V+  + S  +             L+D+     
Sbjct: 305 VAIEGDARAVKDARRNVMNNLDPDIAQKVRFHQGSVGDVLA---------HLQDVP---- 351

Query: 291 RFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALF 347
               + +DPPR G     +  +V   P  ++Y++C+P +L RD +++    + +  +  F
Sbjct: 352 SVDAVVLDPPRVGAGAHVIDALVALSPQTMVYVACDPAALARDTALVGERGYQLTSMRAF 411

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP T H+EC  +  R+
Sbjct: 412 DLFPMTHHVECVAVFHRR 429


>gi|145340680|ref|XP_001415448.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575671|gb|ABO93740.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 308

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 94/311 (30%), Positives = 153/311 (49%), Gaps = 10/311 (3%)

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSDQAIVT 120
           M+D+     M +D F      I  +M  ++        LR  L    +L      + + T
Sbjct: 1   MWDRGAPTVM-VDDFPMARRAIRDVMGRLLREASAVAALRDGLEATHFLCGVAEGKVLAT 59

Query: 121 LIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT-L 178
           L+Y   ++ DAW   A RL  A       ++L+GR          D+V E   +   + L
Sbjct: 60  LVYSTPINVDAWTLAARRLL-ATKFDDVSLELMGRCKGVVAKTGDDFVWEEYELGDGSVL 118

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAA---TKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
            Y+  E +F+ PN  I +  +E++  A       +  LLELYCGN N +  LA  ++RV+
Sbjct: 119 TYKHTEGAFSNPNRTITIATMEFLRDAAKKKFSRRKMLLELYCGNANHTCALANLYERVV 178

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AVE+    V+AAR ++  N V+NV I+   S+   +++ R + F       I    F  +
Sbjct: 179 AVEVNPVLVDAARESLDMNSVSNVDIILSPSESVAKSLLRGK-FKDAAGATIRVEDFDAV 237

Query: 296 FVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTR 354
            VDPPR+GLD  T+ +V    H+LY+SC P++L  ++   L  TH ++   + D FP+TR
Sbjct: 238 LVDPPRAGLDADTLALVSQIDHVLYVSCGPENLLANIRDGLDATHAVDDFIVLDHFPWTR 297

Query: 355 HMECGVLLVRK 365
           H+E  V + ++
Sbjct: 298 HIEVAVSMRKR 308


>gi|212704019|ref|ZP_03312147.1| hypothetical protein DESPIG_02072 [Desulfovibrio piger ATCC 29098]
 gi|212672524|gb|EEB33007.1| hypothetical protein DESPIG_02072 [Desulfovibrio piger ATCC 29098]
          Length = 511

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 63/268 (23%), Positives = 105/268 (39%), Gaps = 30/268 (11%)

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR------- 164
             ++Q        R L DA+      ++  +H  +     +    +  +CLDR       
Sbjct: 259 GTAEQRRTVARMGRELLDAFPC----VQAFVHEERATPDALVAGERRVLCLDRRGEALPD 314

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCG 219
           D     L + GR   +     SF Q N+     +    +     ++ D     LL++YCG
Sbjct: 315 DGAPLYLPLGGRW--FGLDPASFFQVNSRAAELLAATAVEMLLSLRPDATPRRLLDVYCG 372

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L+ A HFD VL +E  + +V  A  N       N +     +     A+ RE   
Sbjct: 373 AGAPGLLAAGHFDEVLGMEYDRRAVLLAERNARRFGFGNCRYEVGDAARLLTALARE--- 429

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST 337
                       +    +DPPR G+    +  +   A   ++YISCNP +L RD   LS 
Sbjct: 430 -------HGPGHWDHALLDPPRGGVAPEALEALLHLAPERLVYISCNPATLARDARALSA 482

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
            + + ++   D FP++ H+E      R+
Sbjct: 483 DYELMQVTPLDLFPHSPHVESVSCWQRR 510



 Score = 40.8 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 12/118 (10%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ--------VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
            Y  QL  K   +R  +                 +   E   +R + EF        L  
Sbjct: 85  PYAAQLRWKGQLVRDALERIGGLGRDAALPLRPALGSPEQRAFRNKMEFAFGPADGSLCL 144

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
            +  +   + + +    PG  L+    +E++               +   ++  +  +
Sbjct: 145 GLRRRGGLQVLPV----PGCALLPGEGLELVTACAGLAARSGLPAYVPPRSAAEEGRL 198


>gi|326776084|ref|ZP_08235349.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656417|gb|EGE41263.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces cf. griseus
           XylebKG-1]
          Length = 442

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 121/328 (36%), Gaps = 45/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ I  DG      +   ++ +   ID  +  +  ++ L +E     ++      
Sbjct: 147 WRTRVQYTIDADG---RAGLRKHRSHDVQPIDRCLIAAPGVSELGVEKREWPQIAA---- 199

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              +    T  +D+ ++            R   + L   +      +++  +        
Sbjct: 200 --VEAITATGSNDRQVILTPM-----PGGRLPLVELDKPV----SVLRVEEKDGGVHRVH 248

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            R +V ER         YR     F Q +      ++  V+      + D  L+LYCG G
Sbjct: 249 GRAFVRER----ADDRTYRVGSGGFWQVHPQAANTLVRAVMQGLLPRKNDTALDLYCGVG 304

Query: 222 NFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  + +       VL +E  K +VE AR+N+    ++ V+I      +          
Sbjct: 305 LFAGAIGQRLGEKGAVLGIESGKRAVEDARHNLK--DLDRVRIEHGKVDQVLPR------ 356

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL- 335
                           I +DPPR+G     V  +       I Y++C+P +L RDL+   
Sbjct: 357 --------TGITECDLIVLDPPRAGAGKQVVKHLSGLGARRIAYVACDPAALARDLAYFR 408

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + +  L  FD FP T H+EC  +L 
Sbjct: 409 DGGYKVRTLRAFDLFPMTHHVECVAILE 436


>gi|302338159|ref|YP_003803365.1| (uracil-5)-methyltransferase [Spirochaeta smaragdinae DSM 11293]
 gi|301635344|gb|ADK80771.1| (Uracil-5)-methyltransferase [Spirochaeta smaragdinae DSM 11293]
          Length = 391

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 126/372 (33%), Gaps = 75/372 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV----PNLQIFRSEPIHYRMRAEFHIWHDGDD 57
                   Y  QL  K + LRQ +         P   I       YR RA      +G  
Sbjct: 85  GCQWQHIDYTTQLNSKSEILRQNLARIATIDVTPEEPIASPRVYAYRSRARLRSGENGRL 144

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
            YH      +   + ID                   +    L +  +  I+  T      
Sbjct: 145 GYHA---ASSHNVIAIDRCP----------------VLTPDLEKRVIGGIESST------ 179

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
                        +   +  L   +    +++Q     N           DE +      
Sbjct: 180 ------------EFPHDSQFLFQEMGGNDHRVQWERIGNG---------GDEPI------ 212

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
                    F Q N G+N  +   +       +  +L+LYCG+GN SL LAR   RV   
Sbjct: 213 --------GFRQANEGVNKLLQNEIARFITQSEARVLDLYCGDGNLSLPLARQGCRVRGF 264

Query: 238 EIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           +IA  S++ A         +   V   R+ + E  +AM++             + R   I
Sbjct: 265 DIATSSIKQANRLWRERSTDTHQVSYQRLDAMEAVKAMQQGAIRP------FDAERPDVI 318

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352
            +DPPRSG+    +  +       ILY+SC+P +L RDL   S   + +  +   D FP 
Sbjct: 319 LLDPPRSGVGSEGMQALCTLKAQRILYLSCDPATLSRDLKSASAAGYHLLTVRAADMFPQ 378

Query: 353 TRHMECGVLLVR 364
           T H+E   +L R
Sbjct: 379 TYHLESFAVLER 390


>gi|317050469|ref|YP_004111585.1| (Uracil-5)-methyltransferase [Desulfurispirillum indicum S5]
 gi|316945553|gb|ADU65029.1| (Uracil-5)-methyltransferase [Desulfurispirillum indicum S5]
          Length = 385

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 131/369 (35%), Gaps = 71/369 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLY 59
              L+   Y  Q++ K    ++ +    +      +   EP+ YR RA+  + H      
Sbjct: 82  GCDLMHITYPDQVSLKQRMAQETLAGQSMIREIPLVPSPEPVAYRHRAQLKVRH----GQ 137

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
              F + T + + +      +  +  ++ +M A    +         +   ++    A V
Sbjct: 138 VGFFARGTNQVVPVANCPVLAPPLQQVVQDMAARPPRDGD------YLLLASALQASAAV 191

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +   HR  +      ++ L                          DY    + +      
Sbjct: 192 SFRDHRACEPVEGSPSMVL-------------------------EDYGFGPMLLDSAG-- 224

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
                  F Q N  +   M   V +A  G    + E YCG+G FS  +A     + A EI
Sbjct: 225 -------FAQANPFVTALMASHVASACAGQH--VFEGYCGSGTFSRAIASGAASLEAWEI 275

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           + P+V+ AR N     + N +     +++                        + + VDP
Sbjct: 276 SAPAVKLARRNCR--DLANTRFQAGDAEK-----------------SAIGSDRQIVVVDP 316

Query: 300 PRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRH 355
           PR+GL       + A     ++YISCNP ++ RDL  L      T+  L  FD +P+T H
Sbjct: 317 PRTGLGRGMTSRILASHAKKLIYISCNPATMARDLRFLQENSAFTLTHLEGFDMYPHTTH 376

Query: 356 MECGVLLVR 364
           +E   +L R
Sbjct: 377 LEMLAMLER 385


>gi|45655997|ref|YP_000083.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|51316692|sp|Q72W54|Y086_LEPIC RecName: Full=Uncharacterized RNA methyltransferase LIC_10086
 gi|45599230|gb|AAS68720.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 415

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 140/374 (37%), Gaps = 60/374 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF------QVPNLQIFRSEPIHYRMRAEFHIWHDG 55
             +     Y+++L  K   L++ +  F      Q+P ++I   +P  YR  A+  +   G
Sbjct: 93  GCSYRHVSYQKELEIKKFLLQETLEHFLSKKHIQIPEIEILSGDPNGYRNTAQIQLGFAG 152

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           +      +++ +   + +     G   +   M    A    + +  +K            
Sbjct: 153 NQRLAGFYEEFSHSIVNLPE--EGCKNLPQEMNFAFAEFLKQEVKGSK------------ 198

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
                                 L+    + + +   +    K  +    +     L    
Sbjct: 199 --------------------QILKSKTLSFRLEGTKVISYKKKSVSFSENIRIPEL---- 234

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           + +++      F+Q N  +    LE +       Q  +LELYCG+G  ++ L       L
Sbjct: 235 KKIVWEIPAGGFSQVNRYLIAPWLEKIFELVPNNQNRILELYCGSGLIAIALKSKTTSWL 294

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
             EI+   V+ A+ N+  N +++     ++ +  T  +  E   N               
Sbjct: 295 GYEISSDCVQQAKRNVLLNGISSCDFKTLNLE--TDWIDSEEVLN-----------SSFW 341

Query: 296 FVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPY 352
            ++PPR+GL    +  +++  P+  LY SCN  +L RDLS+ L+  + +  + L D FP 
Sbjct: 342 IMNPPRAGLSKKVLQTLIKTSPNGFLYSSCNHSTLVRDLSLFLNKDYKLSNVTLVDFFPR 401

Query: 353 TRHMECGVLLVRKP 366
           T+H E  V + +K 
Sbjct: 402 TKHFEVIVKVEKKD 415


>gi|321474913|gb|EFX85877.1| hypothetical protein DAPPUDRAFT_208793 [Daphnia pulex]
          Length = 530

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 136/417 (32%), Gaps = 67/417 (16%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN------------------------LQIFRSE-PIHY 43
            Y +QL+ K   +  ++                                ++  S     Y
Sbjct: 116 PYSEQLSLKKQDMLTVLKKLTKEVRNAHQKAGHFIQSKKVAHGAICEFTEMIPSPVSEKY 175

Query: 44  RMRAEFHIWHDGD------DLYHIMFDQQTKERMRIDYFMPGSLLINA---LMIEMMATI 94
           R + EF +  + +            + + +     + +    S  +     +  E     
Sbjct: 176 RNKCEFTVGVNPETDEITLGFRISTYKEGSYAVGPVSHLAFISDAMREAVRVFEEYFRAS 235

Query: 95  RLEPLL----RAKLFQIDYLTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
             +P           Q+   T+ + + + V  ++ + L     +        +      I
Sbjct: 236 GRKPYNPEDHSGFWRQVLVRTNLAGEVLAVVQVHPQNLSPEELDSVKSELKKVAEANKII 295

Query: 150 QLIGRANKTK---------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            L   A   K           +   ++ E+L      L +     +F Q N      +  
Sbjct: 296 SLYFEAVGPKKSGEDSPPEHIMGSTHLVEKLC----GLEFSISPLAFFQVNTLAAEVLFN 351

Query: 201 WVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +   A      ++L++ CG G   L LA+   RV  VE+ + +VE AR N + N + N 
Sbjct: 352 KIAEIAEIDSNTNILDVCCGTGTIGLSLAKKCRRVYGVELVESAVEDARSNASKNGITNC 411

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI- 318
             V   +++    +    +   L++  +   +     +DPPR+GL      ++++   I 
Sbjct: 412 VFVAGKAEDEVNNLIDGIKQKDLEE-GVEGGKI-VAILDPPRAGLHKKCCQLLRSAERIE 469

Query: 319 --LYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLVR 364
             +YISCN  +  +    L                +    D FP T H E  ++L R
Sbjct: 470 RLIYISCNAQAAMKSFIDLCRAQSNAYGGIPFIPVKAMAVDLFPDTPHCEFILVLER 526


>gi|302537426|ref|ZP_07289768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. C]
 gi|302446321|gb|EFL18137.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. C]
          Length = 443

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/328 (21%), Positives = 129/328 (39%), Gaps = 45/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ I   G      +   ++ +   +D+ M  +  ++ L IE     ++      
Sbjct: 148 WRTRVQYAIDETG---RAGLRKHRSHDIEPVDHCMIAAPGVSELGIEKQDWPQMA----- 199

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              +    T  +D+ +V            R   + L   +      +++  +        
Sbjct: 200 -TVEAIAATGSNDRQVVLTPR-----PGGRLPLVELDKPV----SVLRVEEKDGGVHRVH 249

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNG 221
            R +V ER         YR     F Q +      +++ V+      +G++ L+LYCG G
Sbjct: 250 GRPFVRER----ADGRTYRVGMGGFWQVHPQAADTLIKAVMQGLMPRKGEMALDLYCGVG 305

Query: 222 NFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  LA        VL +E  K +VE AR+N+A     +   VR+   +   A+ R   
Sbjct: 306 IFAGALAERLGETGAVLGIESGKRAVEDARHNLA-----DFPRVRIEQGKVDTALPRTGI 360

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS 336
                           + +DPPR+G    TV  + +     I Y++C+P +L RDL    
Sbjct: 361 -----------TECDLVVLDPPRAGAGKQTVRHIASLSARRIAYVACDPAALARDLGYFK 409

Query: 337 -TTHTIERLALFDQFPYTRHMECGVLLV 363
              + +  L +FD FP T H+EC  +L 
Sbjct: 410 DAGYRVRTLRVFDLFPMTHHVECVAILE 437


>gi|212529570|ref|XP_002144942.1| tRNA(m5U54)methyltransferase [Penicillium marneffei ATCC 18224]
 gi|210074340|gb|EEA28427.1| tRNA(m5U54)methyltransferase [Penicillium marneffei ATCC 18224]
          Length = 606

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 125/389 (32%), Gaps = 43/389 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-------FRSE-PIHYRMRAEFHIWH 53
              L +  Y+ QL  K   + +    F     ++       F S    +YR +   H   
Sbjct: 207 GCQLQMLSYKDQLEHKKQIVEKAYANFSGLIPEVVPKIGDTFPSPLTYNYRTKLTPHFGR 266

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI-DYLTS 112
                      +Q  E   I + M        +    + T  +   L+ +  Q+ + +  
Sbjct: 267 ARRFNNQEDVSKQPPECPPIGFNMKNQTKTMDIEDCPLGTDIVRIGLKKERKQVAETIAG 326

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
            +  A + L               +  D+      +        K  +     YV E   
Sbjct: 327 YTQGATILLRESTQRIPKSEFDESKYTDSDDVILKKDHPDYVEEKRYVRDHNGYVVE--- 383

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--------LLELYCGNGNFS 224
                   R    +F Q N  I     E++       +          L++ Y G G F+
Sbjct: 384 -WVDDFELRTKAGAFFQNNNSILSGFTEFMRQNVHPKEQKEGEKPIKYLIDAYSGCGLFT 442

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           + L++ F   L ++I   S+E AR N   N++ N       +    Q +    +      
Sbjct: 443 VTLSKMFKSSLGIDIDVHSIENARENAKYNNLPNTGFTAADATVLFQKVPYPPD------ 496

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST----- 337
                     I +DPPR G     +  +       I Y+SCN  +  RD+  L       
Sbjct: 497 -------ETLIVIDPPRKGCSKDFLRQLLEYGPRRIAYVSCNVHTQARDVGYLVQNDSPN 549

Query: 338 --THTIERLALFDQFPYTRHMECGVLLVR 364
              + IE +  FD FP T H+E   +L +
Sbjct: 550 GVRYDIESVRGFDFFPQTGHVEGLAILNK 578


>gi|182435447|ref|YP_001823166.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463963|dbj|BAG18483.1| putative RNA methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 442

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 121/328 (36%), Gaps = 45/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ I  DG      +   ++ +   ID  +  +  ++ L +E     ++      
Sbjct: 147 WRTRVQYTIDADG---RAGLRKHRSHDVQPIDRCLIAAPGVSELGVEKREWPQIAA---- 199

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              +    T  +D+ ++            R   + L   +      +++  +        
Sbjct: 200 --VEAITATGSNDRQVILTP-----KPGGRLPLVELDKPV----SVLRVEEKDGGVHRVH 248

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            R +V ER         YR     F Q +      ++  V+      + D  L+LYCG G
Sbjct: 249 GRAFVRER----ADDRTYRVGSGGFWQVHPQAANTLVRAVMQGLLPRKNDTALDLYCGVG 304

Query: 222 NFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  + +       VL +E  K +VE AR+N+    ++ V+I      +          
Sbjct: 305 LFAGAIGQRLGEKGAVLGIESGKRAVEDARHNLK--DLDRVRIEHGKVDQVLPR------ 356

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL- 335
                           I +DPPR+G     V  +       I Y++C+P +L RDL+   
Sbjct: 357 --------TGITECDLIVLDPPRAGAGKQVVKHLSGLGARRIAYVACDPAALARDLAYFR 408

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + +  L  FD FP T H+EC  +L 
Sbjct: 409 DGGYKVRTLRAFDLFPMTHHVECVAILE 436


>gi|239918636|ref|YP_002958194.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Micrococcus luteus
           NCTC 2665]
 gi|281415146|ref|ZP_06246888.1| 23S rRNA methyluridine methyltransferase [Micrococcus luteus NCTC
           2665]
 gi|239839843|gb|ACS31640.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Micrococcus luteus
           NCTC 2665]
          Length = 403

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 87/398 (21%), Positives = 144/398 (36%), Gaps = 41/398 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S  L+   Y +QLA+K   ++  +           + F S    +R +A+  +       
Sbjct: 13  SCPLMGVPYARQLADKQAAVQAALADAVDADTVVAEPFASAEAGFRNKAKLVVTGSAAAP 72

Query: 59  YHIMFDQQTKERM---------RIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLF 105
              + D +   R              +  G   +       +    LEP        +L 
Sbjct: 73  RLGILDPRQHPRHHDGAGVDLRDCGLYEAGMEGVFEACAAAVTAAGLEPYDVAARTGELK 132

Query: 106 QIDYLTSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLI-----------G 153
            +    S   +A+V  +       DA R     L D L AR     ++            
Sbjct: 133 NVIVTLSPDREAMVRFVLRSADRLDALRAAVPGLLDDLAARGTPAAVVSANLLPEHVALP 192

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK--GIQG 211
             +K  +          LT+    +  R     F Q N  +   +     A     G+  
Sbjct: 193 EGDKEIVLAGGP----TLTMRLNGVGLRLRPQGFFQTNTAVTEGLYATAAAWVAEAGLPA 248

Query: 212 DLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
              +LYCG G F+  LAR     V  +E +  +V AAR   A   +      R S+ + T
Sbjct: 249 TAWDLYCGVGGFAFHLARAGVRDVWGMESSAEAVAAARETAAELGL--ADRARFSAGDAT 306

Query: 271 QAMR-REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS 327
            A+   +R        +    R   + V+PPR G+       ++    P +LY SCNP +
Sbjct: 307 SALSFGKRRAPEALSFEKRRARPDAVVVNPPRRGIGAELADALEDSGVPTVLYSSCNPAT 366

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L +DL+ + + + + R+ +FD FP TRH E   LL R+
Sbjct: 367 LAQDLARMPS-YRVARVQVFDMFPQTRHAEVLTLLTRR 403


>gi|24212798|ref|NP_710279.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|50401585|sp|Q8F9U1|Y098_LEPIN RecName: Full=Uncharacterized RNA methyltransferase LA_0098
 gi|24193445|gb|AAN47297.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 415

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/374 (18%), Positives = 140/374 (37%), Gaps = 60/374 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF------QVPNLQIFRSEPIHYRMRAEFHIWHDG 55
             +     Y+++L  K   L++ +  F      Q+P ++I   +P  YR  A+  +   G
Sbjct: 93  GCSYRHVSYQKELEIKKFLLQETLEHFLSKKHIQIPEIEILSGDPNGYRNTAQIQLGFAG 152

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           +      +++ +   + +     G   +   M    A    + +  +K            
Sbjct: 153 NQRLAGFYEEFSHSIVNLPE--EGCKNLPQEMNFAFAEFLKQEVKGSK------------ 198

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
                                 L+    + + +   +    K  +    +     L    
Sbjct: 199 --------------------QILKSKTLSFRLEGTKVISYKKKSVSFSENIRIPEL---- 234

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           + +++      F+Q N  +    LE +       Q  +LELYCG+G  ++ L       L
Sbjct: 235 KRIVWEIPAGGFSQVNRYLIAPWLEKIFELVPNNQNRILELYCGSGLIAIALKSKTTSWL 294

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
             EI+   V+ A+ N+  N +++     ++ +  T  +  E   N               
Sbjct: 295 GYEISSDCVQQAKRNVLLNGISSCDFKTLNLE--TDWIDSEEVLN-----------SSFW 341

Query: 296 FVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPY 352
            ++PPR+GL    +  +++  P+  LY SCN  +L RDLS+ L+  + +  + L D FP 
Sbjct: 342 IMNPPRAGLSKKVLQTLIKTSPNGFLYSSCNHTTLVRDLSLFLNKDYKLSNVTLVDFFPR 401

Query: 353 TRHMECGVLLVRKP 366
           T+H E  V + +K 
Sbjct: 402 TKHFEVIVKVEKKD 415


>gi|326428288|gb|EGD73858.1| hypothetical protein PTSG_12338 [Salpingoeca sp. ATCC 50818]
          Length = 440

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/408 (23%), Positives = 156/408 (38%), Gaps = 88/408 (21%)

Query: 32  NLQIFRSEPIHYRMRAEFHI----WHDGDDLYHIMFDQQTKERMRID---YFMPGSLLIN 84
           ++ +  S    YR R  F +      DG +  +     +      I     F      I+
Sbjct: 47  DVAVEASPTTGYRYRCRFQLLRCCGVDGGEERYAFAVWKHGRPQAIHSPRDFTIACARIH 106

Query: 85  ALMIEMMATIR-----------LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA--W 131
            LM  ++                  +L        +  + +D A++T IY   ++D   W
Sbjct: 107 TLMERVLEEANCKGGGDGGDGAGNEVLWQHCQAAHFHCTTTDDAMITFIYDAAIEDEGRW 166

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT-------------- 177
           R  A RL     +RK+   L+ R+   ++ +  DYV+E LT+                  
Sbjct: 167 RHEAQRL-----SRKWGCHLLARSKGQRLVVGNDYVEEVLTLPPLNDDNTGGTSYPGSSR 221

Query: 178 -----------------------------------LIYRQIENSFTQPNAGINVHMLEWV 202
                                              ++ RQ E +F+ PN  I +  + W+
Sbjct: 222 RQADTTALTTTTTTTTTSNSQSGTTARSSGAAALRIVLRQPEGAFSNPNPYICLRTMLWL 281

Query: 203 LAATKGIQGDL---LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-N 258
                 ++ D+   LELY G G ++ +L   FD V  VEI+   V AA++N  AN V+  
Sbjct: 282 RQRAALVRADVRHMLELYAGAGTYTPILGHLFDAVTTVEISTALVAAAQHNATANGVDER 341

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           V++VR   +     +                  F  + +DPPR+G D  T+  +  Y HI
Sbjct: 342 VRVVRAPVEAVRHIISSA---------SHEGVTFDAVMLDPPRAGADAFTISCLGQYKHI 392

Query: 319 LYISCNP-DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + +SCNP  +  RDL +L  TH I      D FP T H E  + L+R+
Sbjct: 393 ILLSCNPLHTFPRDLRVLCRTHRIASAIALDHFPQTPHFEAAMHLIRR 440


>gi|239944893|ref|ZP_04696830.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
           15998]
 gi|239991359|ref|ZP_04712023.1| putative RNA methyltransferase [Streptomyces roseosporus NRRL
           11379]
 gi|291448358|ref|ZP_06587748.1| RNA methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291351305|gb|EFE78209.1| RNA methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 442

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 122/328 (37%), Gaps = 45/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ I  +G      +   ++ +   ID+ +  +  ++ L +E     ++      
Sbjct: 147 WRTRVQYAIDAEG---RAGLRKHRSHDVQPIDHCLIAAPGVSELGVEKREWPQIAA---- 199

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              +    T  +D+ ++            R   + L   +      +++  +        
Sbjct: 200 --VEAITATGSNDRQVILTP-----KPGGRLPLVELDKPV----SVLRVDEKDGGVHRVH 248

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
            R +V ER         YR     F Q +      ++  V+      + D  L+LYCG G
Sbjct: 249 GRAFVRER----ADDRTYRVGSGGFWQVHPQAANTLVRAVMQGLLPRKNDTALDLYCGVG 304

Query: 222 NFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  + +       VL +E  K +VE AR+N+    ++ V+I      +          
Sbjct: 305 LFAGAIGQRLGEKGAVLGIESGKRAVEDARHNLK--DLDRVRIEHGKVDQVLPR------ 356

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL- 335
                           I +DPPR+G     V  +       I Y++C+P +L RDL+   
Sbjct: 357 --------TGITECDLIVLDPPRAGAGKQVVKHLSGLGARKIAYVACDPAALARDLAYFR 408

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + +  L  FD FP T H+EC  +L 
Sbjct: 409 EGGYRVRTLRAFDLFPMTHHVECVAILE 436


>gi|315655217|ref|ZP_07908118.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC
           51333]
 gi|315490472|gb|EFU80096.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC
           51333]
          Length = 435

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 146/411 (35%), Gaps = 55/411 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-----------------NLQIFRSEPIHYR 44
           S  L+   Y QQ+ +K    R+ +++   P                  L  +RS    +R
Sbjct: 30  SCPLMGVPYSQQVRDKERASRRALISLDRPSSRRNPAQPPAAKSQFDWLPTYRSPQKEFR 89

Query: 45  MRAEFHIWHDGDDLYHIMFDQQTK-ERMRIDYFM-------PGSLLINALMIEMMATIRL 96
            +A+  +      +   +   +     + +                I A +  + A    
Sbjct: 90  NKAKMVVSGSKKSIVLGLAPTKDHPAGVDLQACPLYVPAIRAAFAPIRAWLQRLGARPYN 149

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIY------HRLLDDAWRECAIRLRDALHARKYQIQ 150
               + ++  +    +   + +V L+       HR +++ W E    L    H R + + 
Sbjct: 150 IATAKGEVKYVLVSANPEGELMVRLVLRSKAALHR-IENTWSELQAELP---HLRVFSVN 205

Query: 151 LIGRANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
           +      T +   R+ +    +  + + G          +F Q N   +  M        
Sbjct: 206 IQP--EHTTVIEGREEIILSSERYIPMPGIGTDLWLAPGAFFQTNTAASQAMYTQAATWA 263

Query: 207 KGIQGD-LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           + +Q +   +LYCG G F+  L+     +V  VE+  P+++ A++ +         +   
Sbjct: 264 RELQPETAWDLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTKLESATATVPVE 323

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYR---------FKTIFVDPPRSGLDDATVGMVQ-- 313
            S +            R   I   + +            + V+PPR GL       ++  
Sbjct: 324 PSNKNDGTPNIPSAAPRPHFITADATKWATNQKLVPPDLVVVNPPRRGLGPELSSWLERS 383

Query: 314 AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             PH++Y SC  ++L  DL  + + + I    L D FP+T H+E  VL+ R
Sbjct: 384 GIPHLIYSSCFQETLVEDLRRMRS-YQIRAAKLVDMFPHTSHVESVVLMSR 433


>gi|296235982|ref|XP_002763131.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog isoform 2
           [Callithrix jacchus]
          Length = 459

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 133/375 (35%), Gaps = 73/375 (19%)

Query: 42  HYRMRAEFHI-WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
            YR ++ F +      +   + +   T     I   +  + L N            E  L
Sbjct: 106 GYRNKSTFSVNRGPDGNPKTVGYYLGTWRGGNI-VCVQSNHLKNIPEKHSQVAQYYEIFL 164

Query: 101 RAK-------------LFQIDYLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDA---- 141
           R                 ++   T+      AI+TL   +L  +  R     +++     
Sbjct: 165 RQSPMEPCLVFHEGGYWRELIVRTNSQGHTMAIITLHPQKLSQEELRGQKEIVKEFFIKG 224

Query: 142 ------LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
                 L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N
Sbjct: 225 PGAACDLTSLYFQESTMTRCSHQQSPFELLFGEPYIFEELL----SLKIRISPDAFFQIN 280

Query: 192 AGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
                 ML   +    G+  D  LL++ CG G   L LA+H  +VL +E+ + +VE AR+
Sbjct: 281 TAGAE-MLYRTVGELAGVNSDTILLDICCGTGVIGLSLAQHTSQVLGIELVEQAVEDARW 339

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
             A N + N +     +++    + + +E            +     V+P R+GL    V
Sbjct: 340 TAAYNGITNSEFHTGRAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVV 389

Query: 310 GMV---QAYPHILYISC-----------------NPDSLCRDLSILSTTHTIERLALFDQ 349
             +   +A   ++++SC                 NP        +L     +++    D 
Sbjct: 390 QAIRNCRAIRRLVFVSCKLHGETTRNVIELCCPPNPA-----KKLLGEPFLLQQAVPVDL 444

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H E  +L  R
Sbjct: 445 FPHTPHCELVLLFSR 459


>gi|152965530|ref|YP_001361314.1| deoxyribonuclease/rho motif-related TRAM [Kineococcus radiotolerans
           SRS30216]
 gi|151360047|gb|ABS03050.1| deoxyribonuclease/rho motif-related TRAM [Kineococcus radiotolerans
           SRS30216]
          Length = 450

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 142/371 (38%), Gaps = 49/371 (13%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSEP-------IHYRMRAEFHIWHDGDDLYHIMFD 64
           +Q   K   + + +      +L +   E        + +R R +F +  +G      +  
Sbjct: 115 KQRELKAQVVAEQLHRLAGLDLDVVVEEAPSAGPEGLRWRTRTQFAVDAEG---RTGLRG 171

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            ++ + + ++     +             +    +L  +   ++ +   +       +  
Sbjct: 172 HRSHDVVPLEDCPIST-----------ERVVGSGVLAQRFGNVETVEVAAGSDGAPPLVV 220

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
                       RL DA  A +        A+       R +V+ER+TV G    +R   
Sbjct: 221 VTPTPGRHAHLPRLPDASVAVRT-------ADGLHRVSGRTWVEERVTVRGEDHAFRVGG 273

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIA 240
             F Q +      + E VLAA     G+  L+LY G G F+ +LA        VLAVE  
Sbjct: 274 AGFWQVHPAAPTLLGEAVLAALDPRPGESALDLYSGAGLFTALLADAVGAGGSVLAVEGE 333

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + +V  AR ++  +    V++   + +E             L D ++ + R   + +DPP
Sbjct: 334 ERAVRDARRSL--HGREQVELWAGAVEEA------------LVDEELTARRVDVVVLDPP 379

Query: 301 RSGLDDATVGMVQAYPHIL--YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           RSG     V  V A       Y++C+P +L RD + L+   + +  L  FD FP T H+E
Sbjct: 380 RSGAGREAVAAVAALGARAVAYVACDPAALARDTASLAEHGYVLAGLRAFDLFPQTHHVE 439

Query: 358 CGVLLVRKPSG 368
           C    V +  G
Sbjct: 440 CVARFVPRAQG 450


>gi|68481902|ref|XP_715090.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
 gi|46436698|gb|EAK96056.1| potential tRNA (Uracil-5-)-methyltransferase [Candida albicans
           SC5314]
          Length = 588

 Score =  170 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 140/392 (35%), Gaps = 77/392 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR--------QMMLAFQ-VPNLQIFRSEP--IHYRMRAEFH 50
              L +  YE QL  K   ++        Q+  +F+ + N  I    P    YR +   H
Sbjct: 244 GCQLQMLSYEDQLKYKQSVIQRAYKYFYPQIFNSFKEMDNFGIVNESPLQYSYRTKLTPH 303

Query: 51  IWHDGDDLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
                     + F     + R+ I      +  IN +++E                    
Sbjct: 304 FAASNKVNQKLGFQHVNNRGRLDITNCPIATPEINDILLESRDNY--------------- 348

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
                            +  +     + LR +L      I     A K+     +  V  
Sbjct: 349 -----------------IGKSTPLTQLTLRQSLR-----INQDTGAFKSVALEGQKKV-- 384

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ---GDLLELYCGNGNFSLV 226
            +T      +++   N F Q N  I   +L+++            +L++ YCG G F + 
Sbjct: 385 -ITEKVEDFLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIA 443

Query: 227 LARHFD---RVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRREREFNR 281
           L++ F+   ++  +E+ + +++ A +N   N ++   V+ V   +             N 
Sbjct: 444 LSKSFNENTKIFGIELVEQAIKYANHNAKLNGLDPERVQFVSGDASNIFN--------NE 495

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-- 337
                  S +   + VDP R G +++ +  +  +    ++Y+SCN  S  RDL+      
Sbjct: 496 KFKKSGISGKNSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQ 555

Query: 338 -----THTIERLALFDQFPYTRHMECGVLLVR 364
                 + ++ +  FD FP T+H+E   +L +
Sbjct: 556 QNTNVKYKVKDIMGFDFFPQTKHVESIAILEK 587


>gi|238879827|gb|EEQ43465.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 588

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 140/392 (35%), Gaps = 77/392 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR--------QMMLAFQ-VPNLQIFRSEP--IHYRMRAEFH 50
              L +  YE QL  K   ++        Q+  +F+ + N  I    P    YR +   H
Sbjct: 244 GCQLQMLSYEDQLKYKQSVIQRAYKYFYPQIFNSFKEMDNFGIVNESPLQYSYRTKLTPH 303

Query: 51  IWHDGDDLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
                     + F     + R+ I      +  IN +++E                    
Sbjct: 304 FAASNKVNQKLGFQHVNNRGRLDITNCPIATPEINDILLESRDNY--------------- 348

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
                            +  +     + LR +L      I     A K+     +  V  
Sbjct: 349 -----------------IGKSTPLTQLTLRQSLR-----INQDTGAFKSVALEGQKKV-- 384

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ---GDLLELYCGNGNFSLV 226
            +T      +++   N F Q N  I   +L+++            +L++ YCG G F + 
Sbjct: 385 -ITEKVEDFLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIA 443

Query: 227 LARHFD---RVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRREREFNR 281
           L++ F+   ++  +E+ + +++ A +N   N ++   V+ V   +             N 
Sbjct: 444 LSKSFNENTKIFGIELVEQAIKYANHNAKLNGLDPERVQFVSGDASNIFN--------NE 495

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-- 337
                  S +   + VDP R G +++ +  +  +    ++Y+SCN  S  RDL+      
Sbjct: 496 NFKKSGISGKNSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQ 555

Query: 338 -----THTIERLALFDQFPYTRHMECGVLLVR 364
                 + ++ +  FD FP T+H+E   +L +
Sbjct: 556 QNTNVKYKVKDVMGFDFFPQTKHVESIAILEK 587


>gi|226294037|gb|EEH49457.1| tRNA (uracil-5-)-methyltransferase [Paracoccidioides brasiliensis
           Pb18]
          Length = 550

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 136/407 (33%), Gaps = 90/407 (22%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRAEFHIWH 53
              L +  YE QL  K   + +    F     ++          P    YR +   H   
Sbjct: 154 GCQLQMLPYEDQLKHKKRIVEKAYANFSGLLPELIPAALDTMGSPLQYGYRTKLTPHFPI 213

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
                     D +  E   I + + G       +I++        ++R  L         
Sbjct: 214 PSRTRRSADADVEKAEVPPIGFMLKG----RRTVIDIEDCPLGTDIVRLGL--------- 260

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLT 172
                             +    R+ + LH      QL    ++  I  +  +Y++E+  
Sbjct: 261 ------------------KSERKRVAENLHMYSRDHQL--PDDEQVIRTEHPEYIEEKRC 300

Query: 173 VAGRT---------LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----------- 212
           +  +T           +      F Q N  I     +++     G               
Sbjct: 301 ITDQTGTSFEYVDDYKFENKAGQFFQNNNSILTPFTQYIRDNALGPFSPSTTSSSTQPAS 360

Query: 213 ----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               LL+ Y G+G F++ L+  F   L ++IA  S+EAAR N  AN++ N       +  
Sbjct: 361 KIKYLLDAYSGSGLFTVTLSPLFLSSLGIDIAPQSIEAARKNARANNLPNTGFAAADAAT 420

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPD 326
             + +    E                + +DPPR G D+  +  +  Y    ++Y+SCN  
Sbjct: 421 IFKDVPYPPE-------------KTLLVIDPPRKGCDNNFLQQLLWYGPARVVYVSCNVH 467

Query: 327 SLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLVR 364
           +  RD+ +L            + IE +  FD FP T H+E   +L +
Sbjct: 468 TQARDVGVLVQGANVKGEEVRYEIESIKGFDFFPQTGHVEGVAILNK 514


>gi|116205099|ref|XP_001228360.1| hypothetical protein CHGG_10433 [Chaetomium globosum CBS 148.51]
 gi|88176561|gb|EAQ84029.1| hypothetical protein CHGG_10433 [Chaetomium globosum CBS 148.51]
          Length = 561

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 146/400 (36%), Gaps = 53/400 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS------EPIHYRMRAEFHIWHDG 55
                +  Y++QL  K + + +    F   + ++          P+ Y  R +     DG
Sbjct: 175 GCQFQMLDYDEQLKIKKNIVVKAYRNFSQLSPELIPEVLDTIGSPLQYGYRTKLTPHFDG 234

Query: 56  DDLYHIMFDQQTKERMR-IDYFMPGSLLINALMIEMMATIRLEPLL---RAKLFQIDYLT 111
                    +++ E M  I +    +  +  +    +AT  +   +   RA++  ++Y  
Sbjct: 235 PPGNSRRGPKKSHESMPPIGFTPKATRKVLDIEDCPIATEAVRKGITDERARMA-VEYGN 293

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
                 I+     + +  A     I + +   A   +++     +      D++      
Sbjct: 294 YTKGATILLRESTKRVPKASPTDTIEVPEGTPATALRVESDTHTDFKTCITDQNA---TS 350

Query: 172 TVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD----LLELYCGNGNF 223
           T      ++     SF Q N  I      ++ E +L  T          L++ Y G+G F
Sbjct: 351 TEYIDDFVFTNPAGSFFQNNNSILPPFTAYIREHILPPTTTTTTKPIKYLIDAYSGSGLF 410

Query: 224 SLVLARHF-DRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRREREFN 280
           ++  +  F    + ++IA  S+  AR N + N +     + +   + +  Q+        
Sbjct: 411 TITQSALFPGGSIGIDIADKSITYARRNASLNGLAETQCRFIAADAPQLFQS-------- 462

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTT 338
               +  +      + +DPPR G D + +  +   A   ++Y+SCN  +  RD+ +L   
Sbjct: 463 ----VSAYDPDETVVVLDPPRKGCDASFLRQLLRFAPRRVVYVSCNVHTQARDVGVLVRG 518

Query: 339 --------------HTIERLALFDQFPYTRHMECGVLLVR 364
                         + IE +  FD FP T H+E   +L R
Sbjct: 519 AVEGDKEAGEGGARYEIESIQEFDFFPQTGHVEGVAVLNR 558


>gi|320449579|ref|YP_004201675.1| tRNA (uracil-5-)-methyltransferase superfamily [Thermus scotoductus
           SA-01]
 gi|320149748|gb|ADW21126.1| tRNA (uracil-5-)-methyltransferase superfamily [Thermus scotoductus
           SA-01]
          Length = 409

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 138/363 (38%), Gaps = 43/363 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSE-PIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL  K   ++  ++     +     I  S  P+ YR  A++     G   Y      
Sbjct: 75  YESQLPLKEGLVQDALMRIARLSFSLASIHPSPRPLGYRTAAQYARHPLGGLAY---RFP 131

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRL---EPLLRAKLFQIDYLTSQSDQAIVTLI 122
           +T+E  R++     +  + A    ++ T  L   E  LR  L +   L            
Sbjct: 132 ETQELFRLEEDPLLAEPL-AWAFSLLKTWPLPVEEVALRGSLLEGRVLLGLIGG------ 184

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
               L    R         +   +   +   R     +     Y +  L      L    
Sbjct: 185 NPENLKRPARALVREGFAGVVWAEPSPKGRFRGRVQPL-----YGERTLLERFGPLTATV 239

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              SF+Q N      +LE  L    G +   LELY G+G FSL+LA  F  V+AVEI+K 
Sbjct: 240 SVESFSQVNPLAMGELLEEALNLVSGGK-RALELYAGSGLFSLLLAPRFQEVVAVEISKE 298

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +      +     + +V+  R  +KE                   +  RF  + +DPPR+
Sbjct: 299 AERRGEADRRRLGIEHVRFHRGDAKEAR-----------------NLGRFDLVVLDPPRT 341

Query: 303 GLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           GL       ++++ P  +LY++C+P +  RD+  L    + +     +D FP+T H+E  
Sbjct: 342 GLSPEVRAYLLKSRPKEVLYVACDPATWARDVGELVGGGYQLAFARPYDFFPFTHHVEVL 401

Query: 360 VLL 362
            LL
Sbjct: 402 SLL 404


>gi|297746249|emb|CBI16305.3| unnamed protein product [Vitis vinifera]
          Length = 788

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/523 (14%), Positives = 138/523 (26%), Gaps = 163/523 (31%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLA------------FQVPN--------------LQIFRS 38
           L    Y  QL  K + L Q +                +P                +    
Sbjct: 266 LAHLTYTDQLEHKKNSLMQTLKKLTRNARKACPNGVSLPEWILKSREIGGLPCKFEGILE 325

Query: 39  EPI--HYRMRAEFHIWH--DGDDLYHIMFDQQTKERMRIDY---FMPGSLLINALMIEMM 91
            P+   YR + EF + +   G      M     +    ++        S++         
Sbjct: 326 SPLVNGYRNKCEFSVGYSLQGKPTVGFMLGNFREGITAVEEPADCPNVSMIARRYATIFQ 385

Query: 92  ATIRLEPL-----------------------LRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             ++   L                        +A   +I   +      +V +    + D
Sbjct: 386 EFLQHSGLPLWNRFNNTGFWRQLTVREGRKPGKAAEAKISEPSISEVLVMVQVCSKGIDD 445

Query: 129 DAWRECAIRLRDA------------LHARKYQ-----------------IQLIGRANKTK 159
           +       RL  A            L A   Q                 + +    + + 
Sbjct: 446 EILNGEFERLAQAFTMGATASSPLPLTALVVQDHKGISNVASADAPLRPLPIPKEGSDSG 505

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
                  V+ R+      L +     +F Q N      +              LL ++ C
Sbjct: 506 PDAGGQIVEARIHDYISNLRFCISPTAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDVCC 565

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V+ +E+   +V  A+ N   N + N + V   +++   ++ +E  
Sbjct: 566 GTGTIGLTLAHRVGMVVGIEMNASAVSDAQRNAELNGIKNCRFVCAKAEDVMGSLLKEYL 625

Query: 279 F-----NRLKDI---------------------------------DIHSYRFKTIFVDPP 300
                 N + D                                   +  ++     VDPP
Sbjct: 626 SVPQRQNEVPDFSQSDDKVISNSEDKMESINNALNPEGSSSHELESVRQFKNFVAIVDPP 685

Query: 301 RSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILS--------------------- 336
           R GL    +  ++ +     ++YISCNP+SL  +   L                      
Sbjct: 686 RGGLHPIVIKALRTHACLRRLVYISCNPESLVANAIELCTPSADKTEKGNKNNRGWRNMS 745

Query: 337 ---------------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                                +    D FP+T H E  +LL R
Sbjct: 746 SAGLARHRAKSMPNSEPFQPVKAMAVDLFPHTPHCEMVMLLER 788


>gi|241958416|ref|XP_002421927.1| tRNA (uracil-5-)-methyltransferase, putative; transfer RNA
           methyltransferase, putative [Candida dubliniensis CD36]
 gi|223645272|emb|CAX39928.1| tRNA (uracil-5-)-methyltransferase, putative [Candida dubliniensis
           CD36]
          Length = 553

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 142/392 (36%), Gaps = 77/392 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLR--------QMMLAF-QVPNLQIFRSEP--IHYRMRAEFH 50
              L +  YE QL  K   ++        Q+  +F  + N  +    P    YR +   H
Sbjct: 209 GCQLQMLSYEDQLKYKQSVIQRAYKYFYPQIFNSFNDIDNFGVVNESPLQYTYRTKLTPH 268

Query: 51  IWHDGDDLYHIMFDQ-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
                     + F     +ER+ +      +  IN  ++E                    
Sbjct: 269 FAVSKKVNQKLGFQHVNNRERLDVSNCPIATPEINDKLLESRE----------------- 311

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
                          + +  +     + LR +L      I     A K+     +  V  
Sbjct: 312 ---------------KYIGKSTPLTQLTLRQSLR-----INHDTGAFKSVALEGQKKV-- 349

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ---GDLLELYCGNGNFSLV 226
            +T      +++   N F Q N  I   +L+++            +L++ YCG G F + 
Sbjct: 350 -VTEKVEDFLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFGIA 408

Query: 227 LARHFD---RVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRREREFNR 281
           L++ F+   ++  +E+ + +++ A +N   N ++   V+ V   +             ++
Sbjct: 409 LSKSFNENTKIFGIELVEQAIKYANHNAKLNGLDPERVQFVSGDASNIFN-------NDK 461

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-- 337
            K   I   +   + VDP R G +++ +  +  +    ++Y+SCN  S  RDL+      
Sbjct: 462 FKKSGISG-KNSVVIVDPSRKGSNESFLQQLLNFEPEIVVYVSCNVFSQARDLATFENLQ 520

Query: 338 -----THTIERLALFDQFPYTRHMECGVLLVR 364
                 + ++ +  FD FP T+H+E   +L +
Sbjct: 521 QHTNVKYKVKDVMGFDFFPQTKHVESIAILEK 552


>gi|282862383|ref|ZP_06271445.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces sp. ACTE]
 gi|282562722|gb|EFB68262.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces sp. ACTE]
          Length = 447

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/328 (21%), Positives = 124/328 (37%), Gaps = 45/328 (13%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ I  DG      +   ++ +   ID  +  +  ++ L +E     ++     A
Sbjct: 152 WRTRVQYAIDADG---RVGLRKHRSHDIEIIDECLIAAPGVSELGVEKQDWPQM-----A 203

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +  I    S   Q I+T      L     +  +            +++  +        
Sbjct: 204 TVEAISATGSHDRQVILTPREGGRLPLVELDKPV----------SVLRVDEKDGGVHRVH 253

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNG 221
            R +V ER         YR     F Q +      ++  V+      + D+ L+LYCG G
Sbjct: 254 GRAFVRER----ADDRTYRVGSGGFWQVHPQAADTLVRAVMQGLLPRKNDMALDLYCGVG 309

Query: 222 NFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            F+  + +       VL +E  K +VE AR+N+    ++ V+I      +          
Sbjct: 310 LFAGAIGQRIGEKGAVLGIESGKRAVEDARHNLK--DLDRVRIEHGKVDQVLPR------ 361

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL- 335
                           I +DPPR+G   ATV  +       I Y++C+P +L RDL+   
Sbjct: 362 --------TGITECDLIVLDPPRAGAGKATVKHLSGLGARRIAYVACDPAALARDLAYFR 413

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV 363
              + +  L  FD FP T H+EC  +L 
Sbjct: 414 DGGYKVRTLRAFDLFPMTHHVECVAILE 441


>gi|242762804|ref|XP_002340452.1| tRNA(m5U54)methyltransferase [Talaromyces stipitatus ATCC 10500]
 gi|218723648|gb|EED23065.1| tRNA(m5U54)methyltransferase [Talaromyces stipitatus ATCC 10500]
          Length = 606

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 132/410 (32%), Gaps = 71/410 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-------FRSE-PIHYRMRAEFHIWH 53
              L +  Y+ QL  K   + +    F     ++       F S     YR +   H   
Sbjct: 201 GCQLQMLSYKDQLEHKKRVVEKAYANFSGLIPEVIPPIGDTFPSPLQYGYRTKLTPHFGR 260

Query: 54  DGDDLYH--------------IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
            G   ++                  +   + M I+    G+ ++                
Sbjct: 261 PGRFKHNRDDTVKVDPEVPPIGFNMKNQHKNMDIEDCPLGTDIVR----------LGLKK 310

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
            R ++ +     +Q    ++     R+    + E    + D +  +      +       
Sbjct: 311 ERQRVAESIAGYTQGATILLRESTRRIPISEFSESHAAMSDEIIYKTDHPDYVEEKR--- 367

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPN----AGINVHMLEWV----LAATKGIQG 211
               RD+ +  +         R    +F Q N    +G    M + V    L   +    
Sbjct: 368 --YVRDH-NGYVVEWVDDYELRTKAGAFFQNNNSILSGFTEFMRQNVHPKELKEGEKPIK 424

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L++ Y G G F++ L++ F   L ++I   S+E AR N   N++ N       +     
Sbjct: 425 YLIDAYSGCGLFTVTLSQMFKSSLGIDIDVHSIENARENAKHNNLPNTGFAAADASLLFS 484

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
            +    +                I +DPPR G     +  +       + Y+SCN  +  
Sbjct: 485 KVPYPPD-------------ETLIVIDPPRKGCSKDFLQQLLDYGPRRVAYVSCNVHTQA 531

Query: 330 RDLSILST-------THTIERLALFDQFPYTRHMECGVLL---VRKPSGW 369
           RD+  L          + IE +  FD FP T H+E   +L   V+KP   
Sbjct: 532 RDVGFLVQNDSPNGIRYEIESIRGFDFFPQTGHVEGLAILNKVVKKPGAK 581


>gi|298715093|emb|CBJ27781.1| RNA methyltransferase, TrmA family [Ectocarpus siliculosus]
          Length = 516

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 139/386 (36%), Gaps = 65/386 (16%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ-VPNLQI----FRSEPIHYRMRAEFHIWHDG 55
            G          Q   K  ++   +     + +  +       E   YR +         
Sbjct: 172 GGCQYQHMSVSMQRDWKNQQVMDCLTRIGGMVDPAVKDTFGTDETYGYRSK--------- 222

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID--YLTSQ 113
                  +D   + R+R      G   +      +   + L  +  +K+  ++   L ++
Sbjct: 223 ---LTPHYDAPYQGRVR----EIGFKKVK--FPTIYHGVDLGNVNPSKVVDVERCPLATE 273

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE---- 169
                        ++++        R+ + A            +    L R+  +E    
Sbjct: 274 G------------INESLPPARQEARERVQAAFDSGDGKRVGKRGATLLFRETTEEGTVT 321

Query: 170 ----RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFS 224
                ++     +++      F Q N  +  HM+++V+A A +G   +L++ YCG G F 
Sbjct: 322 DNNAHVSERVGGMVFNFKAGEFFQNNPYVLPHMVDYVVARAKEGGAKNLIDAYCGGGLFC 381

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L  +  F++   +EI+  +V+ A  N A N ++N   +  ++      +           
Sbjct: 382 LSASTSFEKCAGIEISPMAVDCATRNAATNDISNCLFLAGTASNIFANVSFTP------- 434

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLS-ILSTTHTI 341
                     + VDPPR G D   +G +  +    ++Y+SC+P +  RD   I++  +  
Sbjct: 435 ------SETVVIVDPPRKGCDQLFLGQLFKFRPTRLVYVSCDPATQARDAKEIMANGYEA 488

Query: 342 ERLALFDQFPYTRHMECGVLLV--RK 365
             +  FD FP TRH+E  +     RK
Sbjct: 489 VDIQPFDLFPQTRHIENVITFQDNRK 514


>gi|269784678|ref|NP_001161443.1| tRNA (uracil-5-)-methyltransferase homolog isoform b [Homo sapiens]
 gi|57208529|emb|CAI42998.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|57208599|emb|CAI42156.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|57210113|emb|CAI42658.1| chromosome X open reading frame 34 [Homo sapiens]
 gi|119623242|gb|EAX02837.1| chromosome X open reading frame 34, isoform CRA_e [Homo sapiens]
          Length = 459

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 133/369 (36%), Gaps = 61/369 (16%)

Query: 42  HYRMRAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMA 92
            YR ++ F +    D       +++   +       +   +         +       + 
Sbjct: 106 GYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLR 165

Query: 93  TIRLEPLLRAK----LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA----- 141
              LEP L         ++   T+     +  + +H  +L  +        +++      
Sbjct: 166 QSPLEPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKLSQEELHVQKEIVKEFFIRGP 225

Query: 142 -----LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
                L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N 
Sbjct: 226 GAACGLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINT 281

Query: 193 GINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                ML   +    G+  D  LL++ CG G   L LA+H  RVL +E+ + +VE AR+ 
Sbjct: 282 AGAE-MLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWT 340

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            A N + N +     +++    + + +E            +     V+P R+GL    + 
Sbjct: 341 AAFNGITNSEFHTGQAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVIQ 390

Query: 311 MVQAYPHI---LYISC--------NPDSLCRDL----SILSTTHTIERLALFDQFPYTRH 355
            ++ +  I   +++SC        N   LC        +L     +++    D FP+T H
Sbjct: 391 AIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPH 450

Query: 356 MECGVLLVR 364
            E  +L  R
Sbjct: 451 CELVLLFTR 459


>gi|307325080|ref|ZP_07604284.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces
           violaceusniger Tu 4113]
 gi|306889226|gb|EFN20208.1| deoxyribonuclease/rho motif-related TRAM [Streptomyces
           violaceusniger Tu 4113]
          Length = 447

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 136/374 (36%), Gaps = 55/374 (14%)

Query: 12  QQLAEKVDRLRQMMLAFQ---------------VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
            Q   K + + + +                    P  ++ R E   +R R ++ +   G 
Sbjct: 101 AQRRLKAEVITEQLARLAGLTPEEAGWDGTVEPAPGDKVARGEVPAWRTRVQYAVDEQGR 160

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +   ++ E   +D+ +  +  +  L +E        P + +        +S    
Sbjct: 161 P---GLRRHRSHEVEPVDHCLIAAPGVTELGVEKREW----PQIASVEAIAATGSSDRQV 213

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +      RL           LR +    + + +L+ R         R +V ER      
Sbjct: 214 VLTPRPGGRLPIVELDRPVSVLRVSESRGRDRTRLVHR------VHGRPFVRER----AA 263

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR-- 233
              +R  E  F Q +      ++E V+      QG+  L+LYCG G F+  +A       
Sbjct: 264 GRTWRVGEAGFWQVHPKAADVLVEAVMQGLMPRQGETALDLYCGVGLFAGAIAERVGERG 323

Query: 234 -VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            VL +E +K SVE AR+N+    +  V+I     ++                        
Sbjct: 324 AVLGIESSKRSVEDARHNLQ--DLERVRIEHGKVEQVLPR--------------TGITEA 367

Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             I +DPPR+G    TV  + A     I Y++C+P +L RDL       ++  R   FD 
Sbjct: 368 DLIVLDPPRAGAGKETVTRLAALGARRIAYVACDPAALARDLKYFREEGYSPRRTRAFDL 427

Query: 350 FPYTRHMECGVLLV 363
           FP T H+EC  +L 
Sbjct: 428 FPVTHHVECVAVLE 441


>gi|296815714|ref|XP_002848194.1| tRNA methyltransferase [Arthroderma otae CBS 113480]
 gi|238841219|gb|EEQ30881.1| tRNA methyltransferase [Arthroderma otae CBS 113480]
          Length = 545

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 132/398 (33%), Gaps = 54/398 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEP--IHYRMRAEFHIWH 53
              L +  Y+ QL  K   + +    F       +P +      P    YR +   H   
Sbjct: 160 GCQLQMLPYQDQLQHKKRIIEKAYANFSGILPELIPAIGETMGSPMQYGYRTKLTPHFTQ 219

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
              +           E   I + + G   +  +    + T  +   L+ +  ++     Q
Sbjct: 220 PARNRKQEH-GSGPPEVPPIGFMIKGRRKVMDIEDCPLGTDIVRRGLKNERKRVAENLHQ 278

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
                  L+          E    L       +          KT I  D++ +      
Sbjct: 279 YKYGGTLLVRESTKRIERNEENEALPSNDKVIRTTFPNYV-EEKTYIT-DQNAIS---VE 333

Query: 174 AGRTLIYRQIENSFTQPNAGINVH--------------------MLEWVLAATKGIQGDL 213
                 +  I  +F Q N  I                       M   V A +      L
Sbjct: 334 YVDDYQFHNIAGTFFQNNNSILPAFTGYVRDHALHPEPKSDANPMESKVAATSNPKLKYL 393

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+ YCG+G F++VL+  F   L +++A  S++ AR N   + V N       + +  + +
Sbjct: 394 LDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSKVPNTGFAAADAADLFKDI 453

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
               +                + +DPPR G D   +  + AY    +LY+SCN  +  RD
Sbjct: 454 PYPAD-------------QTLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQARD 500

Query: 332 LSILSTT-----HTIERLALFDQFPYTRHMECGVLLVR 364
           + +L        + IE +  FD FP T H+E   +L +
Sbjct: 501 VGVLIEGKNGVRYNIESIRGFDFFPQTSHVESVAVLTK 538


>gi|223935813|ref|ZP_03627728.1| RNA methyltransferase, TrmA family [bacterium Ellin514]
 gi|223895414|gb|EEF61860.1| RNA methyltransferase, TrmA family [bacterium Ellin514]
          Length = 440

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 129/377 (34%), Gaps = 89/377 (23%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDG 55
            G       Y  QL  K  ++  +       + ++        +P  YR R       D 
Sbjct: 138 GGCQYQHMDYAAQLLMKHKQICDLFERIGGIDPKVVGPVIPCPQPYGYRNRIMIRSQWDK 197

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                       K+ + I +        N L++++      EP +  ++  +        
Sbjct: 198 F-----------KQGLNIGFIRAD----NRLVVDIEECKISEPAVNEQIQHVRKNPPPKG 242

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V L   R+  + W                                            
Sbjct: 243 GIKVVL---RVAPEGW-------------------------------------------- 255

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
                    +SF Q N  +   ++       K      L+++YCG G FSL L    +  
Sbjct: 256 -----EVPRDSFFQNNFFLLPELVGVARQFLKDSGSRFLVDVYCGVGFFSLELGDLVEGF 310

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           + VE+ + +++AAR N    ++ N + V   ++E    + +             S    T
Sbjct: 311 VGVELDQLAIKAARRNAEKRNLKNGEFVTGRAEEMLPGLMQRF-----------SPEATT 359

Query: 295 IFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT--HTIERLALFDQF 350
           + +DPPR+G    ++ +++      ++Y+SC+P ++ RDL++L       + ++   D F
Sbjct: 360 VLIDPPRTGCLPESLELLRQTRPNQLIYVSCHPATMARDLNVLCAEGVFELVKVIPCDMF 419

Query: 351 PYTRHMECGVLLVRKPS 367
           P T H+EC   L  K +
Sbjct: 420 PQTAHVECVADLRLKSA 436


>gi|302413229|ref|XP_003004447.1| tRNA (uracil-5-)-methyltransferase [Verticillium albo-atrum
           VaMs.102]
 gi|261357023|gb|EEY19451.1| tRNA (uracil-5-)-methyltransferase [Verticillium albo-atrum
           VaMs.102]
          Length = 559

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 135/409 (33%), Gaps = 76/409 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--------IFRSEPIHYRMRAEFHI-- 51
                +  Y  QL  K   + +    F     +        I       YR +   H   
Sbjct: 177 GCQFQMLDYADQLRHKRSIVVKAFKNFSQLAPELVPTIGDTIGSPLQYGYRTKLTPHFDG 236

Query: 52  ----WHDGDDLY-------HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
               W  G                +  +  + I+    G+  +   M +    I  E   
Sbjct: 237 PPGSWRKGKQRAPFTTMPPIGFNVKGRRAVLDIEDCPIGTQAVRNGMKKERERIEGEYAT 296

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R        L  +S +        +  D A  E A+R+    +     I+     NK   
Sbjct: 297 RN--HGATLLLRESTKRYPKGGDEQPPD-ALPEGAVRVDTDAYT---DIKTCATDNK--- 347

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-------- 212
            +  +Y+D          ++     SF Q N  I     ++V                  
Sbjct: 348 AMTSEYID--------DFLFTNPAGSFFQNNNSILSPFTDYVRQHVLPPAALAAAPGAKP 399

Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSK 267
              L++ Y G+G F++ L+  F   + ++IA  S+ +AR N   N    +    +   + 
Sbjct: 400 IRYLIDAYSGSGLFTITLSGIFKTSMGIDIAADSIASARKNALLNSFTEDQCTFLAADAP 459

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325
           E  + +R + +                + +DPPR G D + +G +       ++Y+SCN 
Sbjct: 460 ELFKHVRYDPD-------------ETVVILDPPRKGCDASFLGQLLDFGPRRVVYVSCNV 506

Query: 326 DSLCRDLSILSTT----------HTIERLALFDQFPYTRHMECGVLLVR 364
            +  RD+ +L             + IE L  FD FP T H+E   +L R
Sbjct: 507 HTQARDVGVLVRGEVEGQKKRTRYEIESLRGFDFFPQTGHVEGVAVLNR 555


>gi|326480712|gb|EGE04722.1| tRNA (uracil-5-)-methyltransferase [Trichophyton equinum CBS
           127.97]
          Length = 593

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 139/401 (34%), Gaps = 60/401 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRAEFHIWH 53
              L +  Y+ QL  K   + +    F     ++          P    YR +   H   
Sbjct: 208 GCQLQMIPYQDQLQHKKRIIEKAYANFSGLLPELIPTIGDTMGSPMQYGYRTKLTPHFTQ 267

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
              +           E   I + M G   +  +    + T  +   L+ +  ++     Q
Sbjct: 268 PARNRKQEH-GSDAPEIPPIGFMMKGRRKVMDIEDCPLGTDIVRSGLKNERKRVAENLQQ 326

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDER 170
               +  L+     +   R    +  +AL +    I+         KT I  D++ +   
Sbjct: 327 YPYGVTLLVR----ESTKRVERSKENEALPSTDKVIRTTFPGYVEEKTYIT-DQNGIS-- 379

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------------------ 212
                    +  I  +F Q N  I      +V       +                    
Sbjct: 380 -VEYVEDYQFHNIAGTFFQNNNSILPSFTGYVRDNALHPEPKSDATPAESAVAAKSNPKL 438

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             LL+ YCG+G F++VL+  F   L +++A  S++ AR N   ++V N       +    
Sbjct: 439 KYLLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAALF 498

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
                       KD+   + +   + +DPPR G D   +  + AY    +LY+SCN  + 
Sbjct: 499 ------------KDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQ 545

Query: 329 CRDLSILSTT-----HTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 546 ARDVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 586


>gi|269978108|ref|ZP_06185058.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris
           28-1]
 gi|269933617|gb|EEZ90201.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris
           28-1]
          Length = 450

 Score =  169 bits (428), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 152/427 (35%), Gaps = 68/427 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S  L+   Y  Q+ +K+   R+M+  F  P+ +    F+     +R +A+  I      +
Sbjct: 29  SCELMGQDYRDQVRDKMRTTRRMLYPFLTPDTKWNSPFQCPQPGFRNKAKMVISGSKKTI 88

Query: 59  YHIMFDQQTK-ERMRIDYFM--PGSL-----LINALMIEMMATIRLEPLLRAKLFQIDYL 110
              +         + ++     P S+      I   ++ + A        R +L  +   
Sbjct: 89  TLGLPPTPRHPHGVDLEKCPLYPESIRATFAPIRQWLLRLGARPYQIDAHRGELRHVLVS 148

Query: 111 TSQSDQAIVTLIYH-----RLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
            + + + +V L+       + +++ W + A  L   L      IQ    A      +I L
Sbjct: 149 ANPAGELMVRLVLRSKAALKRVENTWPDLARELPG-LRVFSVNIQPEHTALIDGPEEIVL 207

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNG 221
                   L + G          +F Q N    + +          +  G + +LYCG G
Sbjct: 208 SP---QRFLPMPGVGTDLFLAPGAFFQTNTAGALALYNQAAEWAARLRPGLVWDLYCGVG 264

Query: 222 NFSLVLARHFD----------------RVLAVEIAKPSVEAARYNIAA------------ 253
            F   +A                    +V+ VE+A  ++E A++                
Sbjct: 265 GFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAAIEGAKHAAQLQRATPGQAPHEN 324

Query: 254 ------------NHVNNVKIVRMSSKEFTQAMRR-EREFNRLKDIDIHSYRFKTIFVDPP 300
                       N  +N+   ++ SK     +R    +  +             + V+PP
Sbjct: 325 QTTQVTGDTTGSNTTDNITTNQVISKPAANGLRFITADAGKWIKNQKKLVTPDLLVVNPP 384

Query: 301 RSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R GL +     ++    PH++Y SC   SL  +L  + + + +  L L D FP+TRH+E 
Sbjct: 385 RRGLGNELSKWIEKSEIPHVIYSSCYQPSLVDNLHRMKS-YRVTELKLVDMFPHTRHVET 443

Query: 359 GVLLVRK 365
            VLL RK
Sbjct: 444 IVLLSRK 450


>gi|302522366|ref|ZP_07274708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp.
           SPB78]
 gi|302431261|gb|EFL03077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp.
           SPB78]
          Length = 447

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 137/374 (36%), Gaps = 60/374 (16%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ---------------IFRSEPIHYRMRAEFHIWHDGD 56
            Q   K D LR+ +        +               +   E   +R R ++ I  DG 
Sbjct: 106 AQRRLKADVLREQLERLAGLTPEQANWDGTVLPAEGDKLPPGEVPAWRTRVQYAIDEDG- 164

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +   ++ E   +D  +  +  ++ L IE      ++      +  I    SQ  Q
Sbjct: 165 --RAGLRRHRSHEVEPVDRCLIAAEGVSELGIESRDWSGMD-----TVEAITATGSQDRQ 217

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I+T      L     +  +            +++  +         R +V ER      
Sbjct: 218 VILTPRPGARLPLVQLDKPV----------SVLRVDEKDGGVHRVHGRAFVRER----AD 263

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR-- 233
              +R     F Q +      ++   +      +G+  L+LYCG G F+  LA       
Sbjct: 264 EHTWRVGNGGFWQVHPKAADTLVRAAMQGLTPRKGETALDLYCGVGLFAGALADRVGEKG 323

Query: 234 -VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            VL +E +K +VE AR+N+A     +   VR+   +  Q + R                 
Sbjct: 324 AVLGIETSKRAVEDARHNLA-----DHPRVRIEQGKVDQVLPRTGI-----------TEA 367

Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             I +DPPR+G   +TV  +       I YI+C+P +L RDL   +   + +  L  FD 
Sbjct: 368 DLIVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAALARDLKHFAENGYRVRVLRAFDL 427

Query: 350 FPYTRHMECGVLLV 363
           FP T+H EC  +L 
Sbjct: 428 FPMTQHFECVAILE 441


>gi|262361371|gb|ACY58092.1| RNA methyltransferase [Yersinia pestis D106004]
          Length = 240

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 19/198 (9%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLAR 229
           L      +       SF Q N  +   +        +  +   + +L+CG G F L  A 
Sbjct: 58  LPERFNQVPLYIRPQSFFQTNPQVAASLYATARQWVQEHEVHSMWDLFCGVGGFGLHCAG 117

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              ++  +EI   ++  AR +     + NV    + S  F  A                +
Sbjct: 118 PETQLTGIEINAEAIACARQSAEQLGLKNVSFAALDSTRFATA---------------EA 162

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
              + + V+PPR G+       +   A   ILY SCN +++ +D+S+L   + IER+ LF
Sbjct: 163 QIPELVLVNPPRRGIGRELCDYLSQMAPKFILYSSCNAETMAKDISLL-AGYHIERVQLF 221

Query: 348 DQFPYTRHMECGVLLVRK 365
           D FP+T H E   LL  +
Sbjct: 222 DMFPHTSHYEVLTLLTLR 239


>gi|318059413|ref|ZP_07978136.1| RNA methyltransferase [Streptomyces sp. SA3_actG]
 gi|318077256|ref|ZP_07984588.1| RNA methyltransferase [Streptomyces sp. SA3_actF]
          Length = 447

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 137/374 (36%), Gaps = 60/374 (16%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ---------------IFRSEPIHYRMRAEFHIWHDGD 56
            Q   K D LR+ +        +               +   E   +R R ++ I  DG 
Sbjct: 106 AQRRLKADVLREQLERLAGLTPEQANWDGTVLPAEGDKLPPGEVPAWRTRVQYAIDEDG- 164

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +   ++ E   +D  +  +  ++ L IE      ++      +  I    SQ  Q
Sbjct: 165 --RAGLRRHRSHEVEPVDRCLIAAEGVSELGIESRDWSGMD-----TVEAITATGSQDRQ 217

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I+T      L     +  +            +++  +         R +V ER      
Sbjct: 218 VILTPRPGARLPLVQLDKPV----------SVLRVDEKDGGVHRVHGRAFVRER----AD 263

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR-- 233
              +R     F Q +      ++   +      +G+  L+LYCG G F+  LA       
Sbjct: 264 EHTWRVGNGGFWQVHPKAADTLVRAAMQGLTPRKGETALDLYCGVGLFAGALADRVGEKG 323

Query: 234 -VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            VL +E +K +VE AR+N+A +       VR+   +  Q + R                 
Sbjct: 324 AVLGIETSKRAVEDARHNLAEH-----PRVRIEQGKVDQVLPRTGI-----------TEA 367

Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             I +DPPR+G   +TV  +       I YI+C+P +L RDL   +   + +  L  FD 
Sbjct: 368 DLIVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAALARDLKHFAENGYRVRVLRAFDL 427

Query: 350 FPYTRHMECGVLLV 363
           FP T+H EC  +L 
Sbjct: 428 FPMTQHFECVAILE 441


>gi|270700645|ref|ZP_06223015.1| tRNA (Uracil-5-)-methyltransferase [Haemophilus influenzae HK1212]
 gi|270315913|gb|EFA27990.1| tRNA (Uracil-5-)-methyltransferase [Haemophilus influenzae HK1212]
          Length = 144

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 83/144 (57%), Positives = 110/144 (76%)

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           FQIDYL++ S++ IV+L+YH+ L + W   A  L+D L  + + +Q+IGRA+K KIC ++
Sbjct: 1   FQIDYLSTLSNKIIVSLLYHKTLTEEWESAAKNLKDLLEKQDFDVQIIGRASKQKICFEQ 60

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           DYVDE L V GR  +YRQ+ENSFTQPNA +N  MLEW +  T+  +GDLLELYCGNGNFS
Sbjct: 61  DYVDEVLPVNGRNYVYRQVENSFTQPNATVNCKMLEWAIDCTQNSEGDLLELYCGNGNFS 120

Query: 225 LVLARHFDRVLAVEIAKPSVEAAR 248
           + LA++F +VLA EIAKPSV AA+
Sbjct: 121 IALAQNFRKVLATEIAKPSVAAAQ 144


>gi|297191558|ref|ZP_06908956.1| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150990|gb|EDY63203.2| RNA methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 456

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 125/329 (37%), Gaps = 47/329 (14%)

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           +R R ++ I    D  +  +   ++ E   I++ M  +  ++ L IE          L  
Sbjct: 161 WRTRVQYAI---DDAGHVGLRRHRSHEVEPIEHCMIAAKGVSELGIE--------ERLWE 209

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-C 161
            +  ++ + +        ++  R           RL      +   +  +   +      
Sbjct: 210 GMATVEAIAASGSGDRQVILTPRP--------GARLPLVELDKPVSVLRVDEKDGGVHRV 261

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGN 220
             R +V ER         +R     F Q +      ++  V+      +GD+ L+LYCG 
Sbjct: 262 HGRAFVRER----ADERTHRVGNGGFWQVHPQAADTLMRAVMQGLLPRKGDMALDLYCGV 317

Query: 221 GNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           G F+  LA        VL +E +K +VE AR+N+     + V++     +          
Sbjct: 318 GLFAGALADRVGDKGAVLGIETSKRAVEDARHNLQ--QFDRVRVEHGKVEAVLPR----- 370

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335
                  ID        I +DPPR+G    TV  +       I Y++C+P +L RDL+  
Sbjct: 371 -----TGID----SVDLIVLDPPRAGAGKQTVRHLAGLGARRIAYVACDPAALARDLAYF 421

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLV 363
           +   +    L  FD FP T H+EC  +L 
Sbjct: 422 AEAGYKPRTLRAFDLFPMTHHVECVAILE 450


>gi|333023959|ref|ZP_08452023.1| putative RNA methyltransferase [Streptomyces sp. Tu6071]
 gi|332743811|gb|EGJ74252.1| putative RNA methyltransferase [Streptomyces sp. Tu6071]
          Length = 433

 Score =  169 bits (427), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 137/374 (36%), Gaps = 60/374 (16%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ---------------IFRSEPIHYRMRAEFHIWHDGD 56
            Q   K D LR+ +        +               +   E   +R R ++ I  DG 
Sbjct: 92  AQRRLKADVLREQLERLAGLTPEQANWDGTVLPAEGDKLPPGEVPAWRTRVQYAIDEDG- 150

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +   ++ E   +D  +  +  ++ L IE      ++      +  I    SQ  Q
Sbjct: 151 --RAGLRRHRSHEVEPVDRCLIAAEGVSELGIESRDWSGMD-----TVEAITATGSQDRQ 203

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            I+T      L     +  +            +++  +         R +V ER      
Sbjct: 204 VILTPRPGARLPLVQLDKPV----------SVLRVDEKDGGVHRVHGRAFVRER----AD 249

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR-- 233
              +R     F Q +      ++   +      +G+  L+LYCG G F+  LA       
Sbjct: 250 EHTWRVGNGGFWQVHPKAADTLVRAAMQGLTPRKGETALDLYCGVGLFAGALADRVGEKG 309

Query: 234 -VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            VL +E +K +VE AR+N+A +       VR+   +  Q + R                 
Sbjct: 310 AVLGIETSKRAVEDARHNLAEH-----PRVRIEQGKVDQVLPRTGI-----------TEA 353

Query: 293 KTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             I +DPPR+G   +TV  +       I YI+C+P +L RDL   +   + +  L  FD 
Sbjct: 354 DLIVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAALARDLKHFAENGYRVRVLRAFDL 413

Query: 350 FPYTRHMECGVLLV 363
           FP T+H EC  +L 
Sbjct: 414 FPMTQHFECVAILE 427


>gi|327299650|ref|XP_003234518.1| tRNA(m5U54)methyltransferase [Trichophyton rubrum CBS 118892]
 gi|326463412|gb|EGD88865.1| tRNA(m5U54)methyltransferase [Trichophyton rubrum CBS 118892]
          Length = 545

 Score =  169 bits (427), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 141/401 (35%), Gaps = 60/401 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEP--IHYRMRAEFHIWH 53
              L +  Y+ QL  K   + +    F       +P +      P    YR +   H   
Sbjct: 160 GCQLQMIPYQDQLQHKKRIIEKAYANFSGLLPVLIPAIGDTMGSPMQYGYRTKLTPHFTQ 219

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
              +           E   I + M G   +  +    + T     ++R+ L       ++
Sbjct: 220 PARNRRQEH-GSDAPEIPPIGFMMKGRRKVMDIEDCPLGT----DIVRSGLKNERKRVAE 274

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDER 170
           + Q         + +   R    +  +AL +    I+         KT I  D++ +   
Sbjct: 275 NLQQYPYGGTLLVRESTKRVERNKENEALPSTDKVIRTTFPEYVEEKTYIT-DQNGIS-- 331

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------------------ 212
                    +  I  +F Q N  I      +V       +                    
Sbjct: 332 -VEYVEDYQFHNIAGTFFQNNNSILPSFTGYVRDNALHPEPKPDATPAESAAAAKSNPKL 390

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             LL+ YCG+G F++VL+  F   L +++A  S++ AR N   ++V N       +    
Sbjct: 391 KYLLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAALF 450

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
                       KD+   +Y+   + +DPPR G D   +  + AY    +LY+SCN  + 
Sbjct: 451 ------------KDVPYPAYQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQ 497

Query: 329 CRDLSILSTT-----HTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 498 ARDVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 538


>gi|332670648|ref|YP_004453656.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas fimi ATCC
           484]
 gi|332339686|gb|AEE46269.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas fimi ATCC
           484]
          Length = 429

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 130/368 (35%), Gaps = 59/368 (16%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWHDGDDLYHIM 62
             Q   K   L + +         +   + P       +H+R R +             M
Sbjct: 107 PAQRRWKEAVLAEQLRRLARDERAVTVHAAPGDDDRGGLHWRTRIDLVA---DARGRAGM 163

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
              ++ +   +D     +  I AL                 LF+  +      +A+    
Sbjct: 164 RGHRSHDVRALDAMPLATEAIEALG----------------LFERRWSGGARIEAVA--- 204

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                  A  +  + L+D           +GR    K    R  V E +     T  YR 
Sbjct: 205 ------PAAGDTPLVLQDGAP------FDLGRGRTDKRPNARTSVREEVRRGDVTYTYRV 252

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD--RVLAVEI 239
               F Q +      ++  VL A   + G + L+LY G G F+L LA       V++VE 
Sbjct: 253 AAAGFWQVHREAPGLLVGAVLDALGDVDGAVVLDLYAGAGLFTLPLADAVGDGEVVSVEG 312

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +V  AR N+      NV++                     +D D        + +DP
Sbjct: 313 DARAVRDARRNVHDR--PNVELHAGDVARVLTG---------RQDADSDVVHADAVVLDP 361

Query: 300 PRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356
           PR+G     V  V A     ++Y++C+P +L RD+++L    + ++ +  +D FP+T H+
Sbjct: 362 PRTGAGRRVVDAVAALRPERVVYVACDPAALARDVALLGEAGYALDDVQGYDLFPHTHHL 421

Query: 357 ECGVLLVR 364
           E   +  R
Sbjct: 422 EAVAVFTR 429


>gi|294791006|ref|ZP_06756164.1| putative tRNA (Uracil-5-)-methyltransferase [Scardovia inopinata
           F0304]
 gi|294458903|gb|EFG27256.1| putative tRNA (Uracil-5-)-methyltransferase [Scardovia inopinata
           F0304]
          Length = 448

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 139/381 (36%), Gaps = 52/381 (13%)

Query: 11  EQQLAEKVDRLRQMML-----AFQVPNLQIFRSEP---IHYRMRAEFHIWHDGDDLYHIM 62
           + Q   K   + + M         VP  Q+   EP   +H+R R +      G++ +  M
Sbjct: 93  QGQTQWKQTVVEEQMKHLAGLDLTVPLTQVPEDEPEDGLHWRTRLDLVA---GNNGHLAM 149

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
             + + + + +D     S  +  L  E     +   L               D   +++ 
Sbjct: 150 RKRGSHDLLPLDTMPLASRRLLNLAQEQGWWSQTFQL--------------GDHIRISVP 195

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV-------AG 175
             R   ++           +     Q    G     K+   R  + E++ V       + 
Sbjct: 196 EPRPGQESSVGQTPGQEAGVQQSASQTGNFGFLVNGKVVSGRRNLTEKVVVTLPFIQNSP 255

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHF 231
             L Y      F Q +      ++   +       G     + +LY G+G F+L  A  F
Sbjct: 256 LDLSYTVDAEGFWQVHRMAPQILVSEAVQRMFSAGGKDSSLIWDLYSGSGLFTLAAATAF 315

Query: 232 --DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              R+L+VE A  +V+ AR N AA  ++ +        +  + +            D   
Sbjct: 316 PQARILSVEGAPVAVKNARENSAAAGLDTITSQEGDVYKTLKNLS-----------DTTL 364

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTIERLAL 346
              + I +DPPRSG       ++ +     I+YISCNP SL RD+S L    + +  +  
Sbjct: 365 AHPQIILLDPPRSGAGRKVCNLLSSSQAETIIYISCNPASLARDISYLRQGGYELTSIHA 424

Query: 347 FDQFPYTRHMECGVLLVRKPS 367
           +D +P T H+E   L+ R  +
Sbjct: 425 YDIYPLTHHVETICLMSRHNT 445


>gi|145513256|ref|XP_001442539.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409892|emb|CAK75142.1| unnamed protein product [Paramecium tetraurelia]
          Length = 559

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 158/427 (37%), Gaps = 78/427 (18%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-----------QVPNLQ-----IFRSEP-------- 40
           L   +YE+Q+ +K+  L++++                P+       I  ++P        
Sbjct: 135 LYQVKYEEQVEQKMAELKKVIKKLRNQFIQKNGKEYAPDWILDTNLIKLNDPITCDEQFR 194

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR--------IDYFMPGSLLINALMIEMMA 92
            +YR + EF I ++      + F+  + ++                 ++ I       + 
Sbjct: 195 FNYRNKCEFTISYNSQKEVCVGFNVGSVQKNNDSVEQPNTCPVTPAVAMEIANKFQTYLQ 254

Query: 93  TIRLEPLLRA-------------------KLFQID---YLTSQSDQAIVTLIYHRLLDDA 130
           + + +P  R                     L  +        Q + A+V      L   +
Sbjct: 255 SSKFQPFNRQNGSGVWRMLSVRKSDRTKQLLISVSINKDNLQQDEYAVVCDELMTLFSTS 314

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           + E +++    +H+ K    L   A+ TKI     Y  E +      + Y    N+F+Q 
Sbjct: 315 YGEFSLQGLLLMHSNKLGQDLASSADDTKILFGNSYYQEIILDKKINISY----NAFSQN 370

Query: 191 NAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +      + + ++   K  +    L+L  G+G   + ++     +LA+E+ K S E A  
Sbjct: 371 HTPQCDKLYQVIIDLCKNKKITKFLDLCAGSGTIGICVSDQIQDILAIEMNKSSCEDACE 430

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N++ N +I+    ++  + + ++ +    K       +     +DPPR+G+ +  +
Sbjct: 431 NYKLNNLQNCQIICSKVEDVIKKVAQDLKSFEGK-------QQLMACLDPPRAGVLNNVI 483

Query: 310 GMVQAYP---HILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHME 357
             ++      HI+Y+SC+P  +  +L  L              +  + L D FP T H E
Sbjct: 484 EAIRTCKGIDHIIYVSCSPPQVIDNLIQLCLPQCKKNKAPGFKLVNVTLVDMFPQTSHFE 543

Query: 358 CGVLLVR 364
               L R
Sbjct: 544 AVFYLER 550


>gi|241688185|ref|XP_002412851.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
 gi|215506653|gb|EEC16147.1| tRNA uracil-5-methyltransferase, putative [Ixodes scapularis]
          Length = 399

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 83/221 (37%), Gaps = 30/221 (13%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELY 217
           ++     ++ E +      L +R    SF Q N+ +   M + V           LL++ 
Sbjct: 193 ELLHGPPHLQEEMG----DLRFRLSPESFFQVNSAVAGFMYDAVRQMLDCNQHSTLLDIC 248

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L +AR    V  ++ +  +VE A YN   N + N + V   ++     MR E 
Sbjct: 249 CGTGTIGLTMARGIHSVFGMDASSQAVEDASYNAQLNGITNARFVAGRAEHLVPNMRNEF 308

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRD--- 331
               L              V+P R GL    +  ++ Y  I   +YISC P+ + +D   
Sbjct: 309 FAEEL-----------CAVVNPGRGGLSSKAIRAMREYKQIKRLVYISCKPEGVAQDNFV 357

Query: 332 --------LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                     +L            D FP TRH E  +L  R
Sbjct: 358 QLCRSTGRSRLLGPPFRPLLACPVDMFPQTRHCELIMLFGR 398


>gi|315052774|ref|XP_003175761.1| hypothetical protein MGYG_03282 [Arthroderma gypseum CBS 118893]
 gi|311341076|gb|EFR00279.1| hypothetical protein MGYG_03282 [Arthroderma gypseum CBS 118893]
          Length = 595

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 143/418 (34%), Gaps = 79/418 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRAEFHIWH 53
              L +  Y+ QL  K   + +    F     ++          P    YR +   H   
Sbjct: 209 GCQLQMIPYKDQLQHKKRIIEKAYANFSGILPELIPAIGDTMGSPMQYGYRTKLTPHFTQ 268

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
              +           +   I + M G   +  +    + T  +   L+ +  ++     Q
Sbjct: 269 PARNRKQEH-GSDAPDIPPIGFMMKGRRKVMDIEDCPLGTDIVRNGLKNERKRVAENLQQ 327

Query: 114 ---SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
                  +V     R+  +A  E       AL +    I+              DYV+E+
Sbjct: 328 YPYGGTLLVRESTKRIERNAENE-------ALTSDDKVIRTTFP----------DYVEEK 370

Query: 171 LTV---------AGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGD------- 212
             +               +  +  +F Q N  I      +V   A    ++ D       
Sbjct: 371 TYITDQNGISVEYVEDYQFHNVAGTFFQNNNSILPAFTGYVRDNALHPELKPDATPAEPT 430

Query: 213 ------------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                       LL+ YCG+G F++VL+  F   L +++A  S++ AR N   + V N  
Sbjct: 431 AAAAKSSPKLKYLLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSKVPNTG 490

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HI 318
                +                KD+   + +   + +DPPR G D   +  + AY    +
Sbjct: 491 FAAADAAALF------------KDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRV 537

Query: 319 LYISCNPDSLCRDLSILSTT-----HTIERLALFDQFPYTRHMECGVLLVRKPSGWHQ 371
           LY+SCN  +  RD+ +L        + IE +  FD FP T H+E   +L +   G  +
Sbjct: 538 LYVSCNVHTQARDVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTKVIEGKQE 595


>gi|57997161|emb|CAI46112.1| hypothetical protein [Homo sapiens]
          Length = 459

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 133/372 (35%), Gaps = 67/372 (18%)

Query: 42  HYRMRAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMA 92
            YR ++ F +    D       +++   +       +   +         +       + 
Sbjct: 106 GYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLR 165

Query: 93  TIRLEPLLRAK----LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA----- 141
              LEP L         ++   T+     +  + +H  +L  +        +++      
Sbjct: 166 QSPLEPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKLSQEELHVQKEIVKEFFIRGP 225

Query: 142 -----LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
                L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N 
Sbjct: 226 GAACGLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINT 281

Query: 193 GINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                ML   +    G+  D  LL++ CG G   L LA+H  RVL +E+ + +VE AR+ 
Sbjct: 282 AGAE-MLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWT 340

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            A N + N +     +++    + + +E            +     V+P R+GL    + 
Sbjct: 341 AAFNGITNSEFHTGQAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVIQ 390

Query: 311 MVQAYPHI---LYIS---------------CNPDSLCRDLSILSTTHTIERLALFDQFPY 352
            ++ +  I   +++S               C PD   +   +L     +++    D FP+
Sbjct: 391 AIRNFRAIHTLVFVSRKLHGESTRNVIELCCPPDPAKK---LLGEPFVLQQAVPVDLFPH 447

Query: 353 TRHMECGVLLVR 364
           T H E  +L  R
Sbjct: 448 TPHCELVLLFTR 459


>gi|12720278|gb|AAK02154.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 396

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 142/390 (36%), Gaps = 41/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y  QLA+K   L+Q +       +Q    + S    +R +A+  +    +  
Sbjct: 22  SCQWLATPYSTQLAKKQQHLQQQLQKLDCTQIQWQAPYTSILQGFRNKAKMAVSGMVERP 81

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
                  +  +      +      I  ++ + +A   L P      + +L  I    SQ 
Sbjct: 82  ILSHPQSEA-DLTDCPLYPAHFTNIFTILRDFIARAGLVPYNIQKQKGELKYILLTESQL 140

Query: 115 DQAIV---TLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRA---NKTKICLDRDY 166
           D  ++    L   + L    RE    L     L      IQ    A    + +I L   +
Sbjct: 141 DGGLMLRFVLRSEKKLPLVQRELPGLLAKLPQLKVVSLNIQPQHAAILEGEKEIFLTEQH 200

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
               L      +        F Q N  +   +        + +    L +L+CG G F L
Sbjct: 201 ---TLEECFNQIPLFIRPQGFFQTNPQVAQGLYGTAQHWVQELPVHRLWDLFCGVGGFGL 257

Query: 226 VLARHFD--------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
             A+           ++  +EI+  ++EAA  +     +  VK   + +K F  A     
Sbjct: 258 HCAQALQTQYPDRIIQLTGIEISASAIEAATLSAQKLGLKQVKFQSLDAKHFALA----- 312

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                +         + + V+PPR G+       +   A   ILY SCN +++ +D+  L
Sbjct: 313 -----QSPAAQDDTPELVIVNPPRRGIGIELAQFLNQLAPHFILYSSCNAETMGKDVLHL 367

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + ++++ LFD FP+T H E   LL RK
Sbjct: 368 SD-YQLKKVQLFDMFPHTSHYEVLCLLERK 396


>gi|326473586|gb|EGD97595.1| tRNA(m5U54)methyltransferase [Trichophyton tonsurans CBS 112818]
          Length = 593

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 139/401 (34%), Gaps = 60/401 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRAEFHIWH 53
              L +  Y+ QL  K   + +    F     ++          P    YR +   H   
Sbjct: 208 GCQLQMIPYQDQLQHKKRIIEKAYANFSGLLPELIPTIGDTMGSPMQYGYRTKLTPHFTQ 267

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
              +           E   I + M G   +  +    + T     ++R+ L       ++
Sbjct: 268 PARNRKQEH-GSDAPEIPPIGFMMKGRRKVMDIEDCPLGT----DIVRSGLKNERKRVAE 322

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDER 170
           + Q         + +   R    +  +AL +    I+         KT I  D++ +   
Sbjct: 323 NLQQYPYGGTLLVRESTKRVERSKENEALPSTDKVIRTTFPGYVEEKTYIT-DQNGIS-- 379

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------------------ 212
                    +  I  +F Q N  I      +V       +                    
Sbjct: 380 -VEYVEDYQFHNIAGTFFQNNNSILPSFTGYVRDNALHPEPKSDATPAESAVAAKSNPKL 438

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             LL+ YCG+G F++VL+  F   L +++A  S++ AR N   ++V N       +    
Sbjct: 439 KYLLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAALF 498

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
                       KD+   + +   + +DPPR G D   +  + AY    +LY+SCN  + 
Sbjct: 499 ------------KDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQ 545

Query: 329 CRDLSILSTT-----HTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 546 ARDVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 586


>gi|307700713|ref|ZP_07637738.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus
           mulieris FB024-16]
 gi|307613708|gb|EFN92952.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus
           mulieris FB024-16]
          Length = 450

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 149/427 (34%), Gaps = 68/427 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S  L+   Y  Q+ +K+   R+M+  F  P+ +    F+     +R +A+  I      +
Sbjct: 29  SCELMGQDYRDQVRDKMRTTRRMLYPFLTPDTKWNSPFQCPQPGFRNKAKMVISGSKKTI 88

Query: 59  YHIMFDQQTK-ERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
              +         + ++               I   ++ + A        R +L  +   
Sbjct: 89  TLGLAPTPRHPHGVDLEKCPLYPESIRATFEPIRQWLLRLGARPYQIDAHRGELRHVLVS 148

Query: 111 TSQSDQAIVTLIYH-----RLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
            + + + +V L+       + +++ W + A  L   L      IQ    A      +I L
Sbjct: 149 ANPAGELMVRLVLRSKAALKRVENTWPDLARELPG-LRVFSVNIQPEHTALIDGPEEIVL 207

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNG 221
                   L + G          +F Q N    + +          +  G + +LYCG G
Sbjct: 208 SP---QRFLPMPGVGTDLFLAPGAFFQTNTAGALALYNQAAEWAARLRPGLVWDLYCGVG 264

Query: 222 NFSLVLARHFD----------------RVLAVEIAKPSVEAARYNIAA------------ 253
            F   +A                    +V+ VE+A  ++E A++                
Sbjct: 265 GFGFAVADSLGANPSPGEAGGGEPGSCQVIGVELAGAAIEGAKHAAQLQRATPGQAPHEN 324

Query: 254 ------------NHVNNVKIVRMSSKEFTQAMRR-EREFNRLKDIDIHSYRFKTIFVDPP 300
                       N  +++   R+ SK     +R    +  +             + V+PP
Sbjct: 325 QTTQVTGGATGSNTTDDITTNRVISKPAANGLRFITADAGKWIRNQKKLVTPDLLVVNPP 384

Query: 301 RSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMEC 358
           R GL +     ++    PH++Y SC   SL  +L  + + + +  L L D FP+TRH+E 
Sbjct: 385 RRGLGNELSKWIEKSEIPHVIYSSCYQPSLVDNLHRMKS-YRVTELKLVDMFPHTRHVET 443

Query: 359 GVLLVRK 365
            VLL RK
Sbjct: 444 IVLLSRK 450


>gi|85110766|ref|XP_963621.1| hypothetical protein NCU06780 [Neurospora crassa OR74A]
 gi|18376010|emb|CAB91744.2| related to endo-exonuclease yNucR [Neurospora crassa]
 gi|28925307|gb|EAA34385.1| hypothetical protein NCU06780 [Neurospora crassa OR74A]
          Length = 642

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/422 (15%), Positives = 134/422 (31%), Gaps = 84/422 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS------EPIHYRMRAEFHIWHDG 55
                +  Y +QL  K   + +    F   + ++          P+ Y  R +     DG
Sbjct: 243 GCQFQMLDYSEQLKHKRSIVVKAYKNFSNLSPELVPEILDTIGSPLQYGYRTKLTPHFDG 302

Query: 56  --------------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
                         +        +  ++ M I+     +  + A +      +       
Sbjct: 303 PPGGNRRGFKKPMEEMPPIGFTPKGLRKVMDIEDCPIATDAVRAGLTAERERMSK----- 357

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--- 158
                 ++ +      I+     + +        I + D              A+ +   
Sbjct: 358 ------EFASYTRGATILLRESTKRVPKPADGSEIAVPDLKPGVLSTPIATPAADGSYTD 411

Query: 159 -KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ------- 210
            K C+  +      T    + I++    SF Q N  I     + +               
Sbjct: 412 FKTCITDNNA--TSTEYIDSFIFQNPAGSFFQNNNSILSPFTDHIRQHILPPSLPEGAKP 469

Query: 211 -GDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSS 266
             +L++ Y G+G F++  +  F    + ++IA  S++ AR N   N ++    K +   +
Sbjct: 470 IKNLIDAYSGSGLFTITQSSLFPGGSIGIDIADKSIDFARRNARLNGLDESQCKFIAADA 529

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCN 324
            +  ++            +         + +DPPR G D + +  +   A   ++Y+SCN
Sbjct: 530 PKLFES------------VAQLDADETVVVLDPPRKGCDASFLRQLMQFAPRRVVYVSCN 577

Query: 325 PDSLCRDLSILSTT----------------------HTIERLALFDQFPYTRHMECGVLL 362
             +  RD+ +L                         + IE +  FD FP T H+E   +L
Sbjct: 578 VHTQARDVGVLVRGRVGDTFGEAFVDPTEGEKKMSRYVIESIRGFDFFPQTGHVEGVAIL 637

Query: 363 VR 364
            R
Sbjct: 638 NR 639


>gi|291457698|ref|ZP_06597088.1| putative TRAM domain protein [Bifidobacterium breve DSM 20213]
 gi|291380751|gb|EFE88269.1| putative TRAM domain protein [Bifidobacterium breve DSM 20213]
          Length = 419

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 139/382 (36%), Gaps = 65/382 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF--------RSEPIHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +           + +H+R R E     
Sbjct: 84  GADLVHVSLPGQLKWKALTVSEQMSRLGHIDVAVPIDRMPGDEELDGLHWRTRIEMIADE 143

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           +G      M  + T  R+ ID     +  +  L +     +           ++     +
Sbjct: 144 NGKPS---MRRRGTHTRVAIDTMPLATRAL--LDVAEREHVWEGGFEPGSQIRLSVPEPR 198

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
            D  I    Y  L+D   R  +  L                              E++T+
Sbjct: 199 GDADIAADDYAVLIDGELRNGSQLL-----------------------------TEQVTI 229

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVL-----AATKGIQGDLLELYCGNGNFSLVLA 228
            G+T  YR   N F Q +    + +   V+          +   + +LY G+G F+L LA
Sbjct: 230 NGKTFDYRVDANGFWQVHRQAPIALGTHVINQVNQQLQGAVAPVIWDLYSGSGLFTLPLA 289

Query: 229 RHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R+L+VE A+ +V+ A+ N+ A ++N+V                      L+ +
Sbjct: 290 TMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLEHV 337

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTIE 342
             H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + ++
Sbjct: 338 PAHLAKPDIVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYELK 397

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +  FD +P T H+E   +  R
Sbjct: 398 DIRAFDIYPMTHHVETVAVFSR 419


>gi|168039167|ref|XP_001772070.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676671|gb|EDQ63151.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 764

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/514 (16%), Positives = 141/514 (27%), Gaps = 154/514 (29%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVP--------------------------NLQIFRS 38
           L    YE QLA+K + + Q++                                  +    
Sbjct: 251 LAHLSYEDQLAKKKEEIIQVLKRLARNIRKGCPSGMLLPDWLAAAKDREGLPCEFEGILP 310

Query: 39  EPI--HYRMRAEFHIW--HDGDDLYHIM----FDQQTKERMRIDYFMPGSLL-------- 82
            P+   YR + EF I    DG           F +              S +        
Sbjct: 311 SPVVDGYRNKCEFAIGLGPDGKQRVVGFQLGSFREGINAIAEPGECRNVSSVALNFVAAF 370

Query: 83  ---INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ-------------AIVTLIYHRL 126
              I A  + +          R    +       +D+                T +    
Sbjct: 371 QTFIRASKLPVWDKKDNTGFWRMLTIREGREPGSADEIGKEIAEVMLIVQVCPTGVPEDR 430

Query: 127 LDDAWRECAIRLRDALHARKYQIQL--------IGRANKT---------------KICLD 163
             + + + A  L +A      Q+ L        +G +N                 +I   
Sbjct: 431 ATEEYSKMAEVLIEAATTATPQLPLTALLVQEHVGVSNSAPADCPLRALPLPGLDEIRNT 490

Query: 164 RDYVDERLTVAGRTL---IYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCG 219
              VDE L      +    +R    +F Q N+     +     + A  G    L ++ CG
Sbjct: 491 GKPVDEVLGHIHDYIGLSKFRISPTAFFQVNSAGAEKLYSLAGVWAGLGPDTLLFDVCCG 550

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   L LA+    V+ +E+   +V  A+ N   N + N + +   +++    + RE   
Sbjct: 551 TGAIGLTLAKRVGMVVGIEMNASAVADAQLNADLNGITNCRFIAGKAEDVIGNLLREYAI 610

Query: 280 -------------------------------NRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                                          N+        +      VDPPR GL    
Sbjct: 611 DGPVSQKASEPETGKSEASNEEQVSTLVSPANQQNGDSRPRFNNIVAIVDPPRVGLHHVV 670

Query: 309 VGMVQAYP---HILYISCNPDSLCRDLSILS----------------------------- 336
           +  ++ +     ++YISCNPDSL  +   L                              
Sbjct: 671 LRTLRLHKQLRRLVYISCNPDSLLANAVELCMPIKEGPVEKQKQRGGFRGSNLGHARRRV 730

Query: 337 ------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                       +    D FP+T+H E  +L  R
Sbjct: 731 KTLPPSEPFRPVKACAVDLFPHTKHCEMVMLFER 764


>gi|295670283|ref|XP_002795689.1| tRNA (uracil-5-)-methyltransferase [Paracoccidioides brasiliensis
           Pb01]
 gi|226284774|gb|EEH40340.1| tRNA (uracil-5-)-methyltransferase [Paracoccidioides brasiliensis
           Pb01]
          Length = 549

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 134/397 (33%), Gaps = 70/397 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRAEFHIWH 53
              L +  YE QL  K   + +    F     ++          P    YR +   H   
Sbjct: 154 GCQLQMLPYEDQLKHKKRIVEKAYANFSGLLPELIPAALDTMGSPLQYGYRTKLTPHFPI 213

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
                  +  D +  E   I + + G       +I++        ++R  L       ++
Sbjct: 214 PSRTQRSVGADGEKAEVPPIGFMLKG----RRTVIDIEDCPLGTDIVRLGLRSERKRVAE 269

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           +   +      R L D  +       + +  ++      G +         +YVD     
Sbjct: 270 N---LHMYSRDRQLPDDEQVIRTEYPEYIEEKRCITDQTGTS--------FEYVD----- 313

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---------------LLELYC 218
                 +      F Q N  I     +++     G                   LL+ Y 
Sbjct: 314 ---DYKFENKAGQFFQNNNSILTPFTQYIRDNALGPFSPSTTSSSTQPASKIKYLLDAYS 370

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G+G F++ L+  F   L V+IA  S+EAAR N  AN++ N       +    + +    E
Sbjct: 371 GSGLFTVTLSPLFLSSLGVDIAPQSIEAARKNARANNLPNTGFAAADAAAIFKDVPYPPE 430

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS 336
                           + +DPPR G D+  +  +  Y    ++Y+SCN  +  RD+ +L 
Sbjct: 431 -------------KTLLVIDPPRKGCDNNFLQQLLWYGPARVVYVSCNVHTQARDVGVLV 477

Query: 337 TT---------HTIERLALFDQFPYTRHMECGVLLVR 364
                      + IE +  FD FP T H+E   +L +
Sbjct: 478 QGANVKGEEVRYKIESIKGFDFFPQTGHVEGVAILNK 514


>gi|309798887|ref|ZP_07693147.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
           SK1302]
 gi|308117483|gb|EFO54899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
           SK1302]
          Length = 362

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 101/303 (33%), Gaps = 28/303 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 66  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 125

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL---LINALMIEMMATIRLEPLLRAKLFQIDYL- 110
              +   ++ Q +   + +   +       +I   + E++   ++      K+  +  + 
Sbjct: 126 KGQVKVGLYAQNSHYLVELKDCLVQDKETQIIANRIAELLTYHQIPITDERKILGVRTIM 185

Query: 111 ---TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKI 160
                ++ Q  + ++ +R L+    +    L                        +KT+I
Sbjct: 186 VRRARKTGQVQIIIVTNRQLN--LTQFVKDLVKDYPEVVTVAVNTNTAKTSEIYGDKTEI 243

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCG 219
              +D + E +        +     +F Q N      +  E V A        L++ YCG
Sbjct: 244 IWGQDSIREGVL----DYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVNENDHLIDAYCG 299

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G      A+    +  ++I   ++E A+ N       N      +++E      R+   
Sbjct: 300 VGTIGFAFAKKVKSLRGMDIIPEAIEDAKENAKRMGYTNTHYEAGTAEEIIPVGTRKAIV 359

Query: 280 NRL 282
             L
Sbjct: 360 QML 362


>gi|302656253|ref|XP_003019882.1| hypothetical protein TRV_06080 [Trichophyton verrucosum HKI 0517]
 gi|291183655|gb|EFE39258.1| hypothetical protein TRV_06080 [Trichophyton verrucosum HKI 0517]
          Length = 544

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 139/401 (34%), Gaps = 60/401 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRAEFHIWH 53
              L +  Y+ QL  K   + +    F     ++          P    YR +   H   
Sbjct: 159 GCQLQMIPYQDQLQHKKRIIEKAYANFSGLLPELIPAIGDTMGSPMQYGYRTKLTPHFTQ 218

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
              +           E   I + M G   +  +    + T     ++R+ L       ++
Sbjct: 219 PARNRRQEH-SSDAPEIPPIGFMMKGRRKVMDIEDCPLGT----DIVRSGLKNERKRVAE 273

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDER 170
           + Q         + +   R    +  +AL +    I+         KT I  D++ +   
Sbjct: 274 NLQQYPYGGTLLVRESTKRVERNKENEALPSTDKVIRTTFPEYVEEKTYIT-DQNGIS-- 330

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------------------ 212
                    +  I  +F Q N  I      +V       +                    
Sbjct: 331 -VEYVEDYQFHNIAGTFFQNNNSILPSFTGYVRDNALHPEPKPDATPAESAAAAKSNPKL 389

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             LL+ YCG+G F++VL+  F   L +++A  S++ AR N   ++V N       +    
Sbjct: 390 KYLLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAALF 449

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
                       KD+   + +   + +DPPR G D   +  + AY    +LY+SCN  + 
Sbjct: 450 ------------KDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQ 496

Query: 329 CRDLSILSTT-----HTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 497 ARDVGVLVEGKNGIRYDIESIRGFDFFPQTSHVESVAVLTK 537


>gi|161723317|ref|NP_245007.2| 23S rRNA methyluridine methyltransferase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|20455417|sp|Q9CPH1|RUMB_PASMU RecName: Full=23S rRNA (uracil-5-)-methyltransferase RumB; AltName:
           Full=23S rRNA(M-5-U747)-methyltransferase
          Length = 387

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 142/390 (36%), Gaps = 41/390 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y  QLA+K   L+Q +       +Q    + S    +R +A+  +    +  
Sbjct: 13  SCQWLATPYSTQLAKKQQHLQQQLQKLDCTQIQWQAPYTSILQGFRNKAKMAVSGMVERP 72

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
                  +  +      +      I  ++ + +A   L P      + +L  I    SQ 
Sbjct: 73  ILSHPQSEA-DLTDCPLYPAHFTNIFTILRDFIARAGLVPYNIQKQKGELKYILLTESQL 131

Query: 115 DQAIV---TLIYHRLLDDAWRECAIRLRD--ALHARKYQIQLIGRA---NKTKICLDRDY 166
           D  ++    L   + L    RE    L     L      IQ    A    + +I L   +
Sbjct: 132 DGGLMLRFVLRSEKKLPLVQRELPGLLAKLPQLKVVSLNIQPQHAAILEGEKEIFLTEQH 191

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSL 225
               L      +        F Q N  +   +        + +    L +L+CG G F L
Sbjct: 192 ---TLEECFNQIPLFIRPQGFFQTNPQVAQGLYGTAQHWVQELPVHRLWDLFCGVGGFGL 248

Query: 226 VLARHFD--------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
             A+           ++  +EI+  ++EAA  +     +  VK   + +K F  A     
Sbjct: 249 HCAQALQTQYPDRIIQLTGIEISASAIEAATLSAQKLGLKQVKFQSLDAKHFALA----- 303

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                +         + + V+PPR G+       +   A   ILY SCN +++ +D+  L
Sbjct: 304 -----QSPAAQDDTPELVIVNPPRRGIGIELAQFLNQLAPHFILYSSCNAETMGKDVLHL 358

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           S  + ++++ LFD FP+T H E   LL RK
Sbjct: 359 SD-YQLKKVQLFDMFPHTSHYEVLCLLERK 387


>gi|302496741|ref|XP_003010371.1| hypothetical protein ARB_03072 [Arthroderma benhamiae CBS 112371]
 gi|291173914|gb|EFE29731.1| hypothetical protein ARB_03072 [Arthroderma benhamiae CBS 112371]
          Length = 637

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 139/401 (34%), Gaps = 60/401 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRAEFHIWH 53
              L +  Y+ QL  K   + +    F     ++          P    YR +   H   
Sbjct: 252 GCQLQMIPYQDQLQHKKRIIEKAYANFSGLLPELIPAIGDTMGSPMQYGYRTKLTPHFTQ 311

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
              +           E   I + M G   +  +    + T     ++R+ L       ++
Sbjct: 312 PARNRRQEH-SSDAPEIPPIGFMMKGRRKVMDIEDCPLGT----DIVRSGLKNERKRVAE 366

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDER 170
           + Q         + +   R    +  +AL +    I+         KT I  D++ +   
Sbjct: 367 NLQQYPYGGTLLVRESTKRVERNKENEALPSTDKVIRTTFPEYVEEKTYIT-DQNGIS-- 423

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------------------ 212
                    +  I  +F Q N  I      +V       +                    
Sbjct: 424 -VEYVEDYQFHNIAGTFFQNNNSILPSFTGYVRDNALHPEPKPDATPAESAAAAKSNPKL 482

Query: 213 --LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             LL+ YCG+G F++VL+  F   L +++A  S++ AR N   ++V N       +    
Sbjct: 483 KYLLDAYCGSGLFTIVLSGTFRSSLGIDVAASSIKCARENAKLSNVPNTGFAAADAAALF 542

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSL 328
                       KD+   + +   + +DPPR G D   +  + AY    +LY+SCN  + 
Sbjct: 543 ------------KDVPYPADQ-TLLVIDPPRKGCDTNFLNQLLAYGPTRVLYVSCNVHTQ 589

Query: 329 CRDLSILSTT-----HTIERLALFDQFPYTRHMECGVLLVR 364
            RD+ +L        + IE +  FD FP T H+E   +L +
Sbjct: 590 ARDVGVLVEGKNGVRYDIESIRGFDFFPQTSHVESVAVLTK 630


>gi|320333842|ref|YP_004170553.1| (Uracil-5)-methyltransferase [Deinococcus maricopensis DSM 21211]
 gi|319755131|gb|ADV66888.1| (Uracil-5)-methyltransferase [Deinococcus maricopensis DSM 21211]
          Length = 407

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/367 (17%), Positives = 119/367 (32%), Gaps = 40/367 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDDLYH 60
           L    Y  QL  K D + + +         +  + P      YR  A++ +   G     
Sbjct: 73  LAHATYAAQLRFKRDFVAEALTRIAKLEHAVGETVPSPRAWAYRNGAQYLVTPRG----L 128

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
              +++  E +           +  + + + A +          F+    T +   A++ 
Sbjct: 129 AYRERRGHEPLTFTRDPLVMEAVQDVTVRVDAALLAPAT--EVAFRASRDTGEVVAALIG 186

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
               R  +       +     +     Q      +   K+       +  +      +  
Sbjct: 187 A--GRPAEHLRAADHLMDAGVVGVSLAQPAGRRFSAGVKLIAG----EGEVRDHFGRVTL 240

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
                 F Q N                G     L+LY G+G     LA  F+RV+ V++A
Sbjct: 241 SVSATGFAQVNPEAAGLAYGRAAEL-AGRGRIALDLYGGSGAIGRHLAGQFERVVVVDVA 299

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + ++   R +     + NV    +    F  A                      I VDPP
Sbjct: 300 QEALARGRRDAQLEGLRNVSFRHVHDAAFPDA--------------------DVIVVDPP 339

Query: 301 RSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           R+GLD AT   +       ++Y+SC+P +  RD+  L      +  +   D +P T H+E
Sbjct: 340 RAGLDAATRDGIDGSVAGRLVYVSCDPATWARDVGDLVRRGWRLGEVTPHDFYPQTSHVE 399

Query: 358 CGVLLVR 364
              +L R
Sbjct: 400 VVSVLSR 406


>gi|221508798|gb|EEE34367.1| RNA methyltransferase, putative [Toxoplasma gondii VEG]
          Length = 426

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 34/262 (12%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI----- 179
           R +++   E   ++     A         +   T +   RD     +T    TL      
Sbjct: 136 RSVNEKLAEIRKQIAVQAQAVSPDAAKAWQKGATVLL--RDTGLNSVTSDPGTLCASTGI 193

Query: 180 ------YRQIENSFTQPNAGINVHMLEWVLAA---------TKGIQGDLLELYCGNGNFS 224
                 YR     F Q N  +   ++  V             +     LL+ YCG G F+
Sbjct: 194 DGLHCWYR--AGDFFQVNRRVLPLLVSHVREQLRDLHEVPGQQPPHRRLLDCYCGVGLFA 251

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L     FD V+  ++   S+E A+YN   N     +     +K F ++            
Sbjct: 252 LACHDDFDEVVGFDVCSSSIELAKYNAQFNSKWRARFEVSDAKNFFESFSA--------G 303

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIE 342
                     + +DPPR G D   +  +++  P  I+YISC+P +  RDL  +   +T++
Sbjct: 304 HSSSDKSRLFVVLDPPRKGCDSEFLLSLLKLKPERIVYISCHPATQARDLKAVLPLYTVK 363

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +  FD FP+TRH+EC + L R
Sbjct: 364 NIQPFDMFPHTRHIECVITLER 385


>gi|221488294|gb|EEE26508.1| RNA methyltransferase, putative [Toxoplasma gondii GT1]
          Length = 426

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 34/262 (12%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI----- 179
           R +++   E   ++     A         +   T +   RD     +T    TL      
Sbjct: 136 RSVNEKLAEIRKQIAVQAQAVSPDAAKAWQKGATVLL--RDTGLNSVTSDPGTLCASTGI 193

Query: 180 ------YRQIENSFTQPNAGINVHMLEWVLAA---------TKGIQGDLLELYCGNGNFS 224
                 YR     F Q N  +   ++  V             +     LL+ YCG G F+
Sbjct: 194 DGLHCWYR--AGDFFQVNRRVLPLLVSHVREQLRDLHEVPGQQPPHRRLLDCYCGVGLFA 251

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L     FD V+  ++   S+E A+YN   N     +     +K F ++            
Sbjct: 252 LACHDDFDEVVGFDVCSSSIELAKYNAQFNSKWRARFEVSDAKNFFESFSA--------G 303

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIE 342
                     + +DPPR G D   +  +++  P  I+YISC+P +  RDL  +   +T++
Sbjct: 304 HSSSDKSRLFVVLDPPRKGCDSEFLLSLLKLKPERIVYISCHPATQARDLKAVLPLYTVK 363

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +  FD FP+TRH+EC + L R
Sbjct: 364 NIQPFDMFPHTRHIECVITLER 385


>gi|269217993|ref|ZP_06161847.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269212928|gb|EEZ79268.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 436

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 87/425 (20%), Positives = 146/425 (34%), Gaps = 84/425 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ------VPNLQ---IFRSEPIHYRMRAEFHIW 52
           S T     Y +QLA K   +R ++           P+++    F S    +R +A+  + 
Sbjct: 13  SCTRANVAYAEQLAAKDASVRALLERSARANGAAAPDVEWNPPFASAEKGFRNKAKLAVG 72

Query: 53  HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLF 105
               +    +     K  + I         + + +  +   I L        P  R +L 
Sbjct: 73  GTLSNPTLGILGSD-KRGIDIAGCPLYEPAVASGIEPLREFIGLAGLTPFDVPSGRGELK 131

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDA--WRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
            +  LT   D  ++     R  +     R+    LR  L         +    K  +  +
Sbjct: 132 SV-ILTGSPDGELMVRFVLRSTESLVRIRKHMSLLRQWLPRIAVVSVNLLPERKAVLEGE 190

Query: 164 RDYV---DERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQG----- 211
           ++ +   ++ L +    +  R    SF Q N  + V +     EWV        G     
Sbjct: 191 KEILLGPEQSLRMDLGDVALRLRPQSFFQTNTRVAVGLYRQAREWVGLLCDAEGGGSHDL 250

Query: 212 ---------------------------------DLLELYCGNGNFSLVLARHFDRVLAVE 238
                                            +L +LYCG G F+L  A    RV  VE
Sbjct: 251 EAKRAEPADSEAKGAKAKGAKPASSASAGGRSIELWDLYCGVGGFALHCAGPGRRVTGVE 310

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           ++  +VE+AR + AA  ++    +   S      +   RE                + V+
Sbjct: 311 LSAQAVESARASAAAAGID-ADFIVGDS------LSAARELG----------TADVVVVN 353

Query: 299 PPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           PPR G+      +       +LY SCNP SL  D++ + +     R  +FD FP+T H E
Sbjct: 354 PPRRGIGGLASWIDASQIRFVLYSSCNPASLAADVASMPS-FRPVRARVFDMFPHTGHTE 412

Query: 358 CGVLL 362
             VLL
Sbjct: 413 TLVLL 417


>gi|313139861|ref|ZP_07802054.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132371|gb|EFR49988.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 437

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 137/384 (35%), Gaps = 71/384 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--------IHYRMRAEFHIWH 53
              L+    E QL  K   +   M      ++ +             +H+R R E     
Sbjct: 101 GADLVHVSLEGQLRWKAATISDQMSRLGHVDVTVPVERAEGDTENGGLHWRTRIEMIADD 160

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           DG      M  + + +R+ +D     +                           D L + 
Sbjct: 161 DGMPS---MRRRGSHKRVPLDTMPLAT---------------------------DNLLAV 190

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN--KTKICLDRDYVDERL 171
           +D+  V         D   E   ++R ++   + Q      A     ++     ++ E +
Sbjct: 191 ADREHVW--------DGGFEPGSQIRLSVPEPRKQPIEGNYAVLVDGELRAGNRHLMETV 242

Query: 172 TVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           TV GR   Y    N F Q +         H+++    A  G+    + +LY G G F+L 
Sbjct: 243 TVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLFTLP 302

Query: 227 LARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           LA       R+L+VE  K +V+ A+ N+ A ++ +V                      L 
Sbjct: 303 LATMIAERTRMLSVEGGKTAVKNAQRNLRALNLPDVDARCGDVSAT------------LA 350

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHT 340
            +  H  R   + +DPPR+G        +       ++Y++C+P SL RD + L S  + 
Sbjct: 351 HVPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISLGYR 410

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +  +  +D +P T H+E      R
Sbjct: 411 LSDIRAYDIYPMTHHVETVAWFTR 434


>gi|310287162|ref|YP_003938420.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum S17]
 gi|309251098|gb|ADO52846.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum S17]
          Length = 420

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 137/384 (35%), Gaps = 71/384 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--------IHYRMRAEFHIWH 53
              L+    E QL  K   +   M      ++ +             +H+R R E     
Sbjct: 84  GADLVHVSLEGQLRWKAATISDQMSRLGHVDVTVPVERAEGDTENGGLHWRTRIEMIADD 143

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           DG      M  + + +R+ +D     +                           D L + 
Sbjct: 144 DGMPS---MRRRGSHKRVPLDTMPLAT---------------------------DNLLAV 173

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN--KTKICLDRDYVDERL 171
           +D+  V         D   E   ++R ++   + Q      A     ++     ++ E +
Sbjct: 174 ADREHVW--------DGGFEPGSQIRLSVPEPRKQPIEGNYAVLVDGELRAGNRHLMETV 225

Query: 172 TVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           TV GR   Y    N F Q +         H+++    A  G+    + +LY G G F+L 
Sbjct: 226 TVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLFTLP 285

Query: 227 LARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           LA       R+L+VE  K +V+ A+ N+ A ++ +V                      L 
Sbjct: 286 LATMTAERTRMLSVEGGKTAVKNAQRNLRALNLPDVDARCGDVSAT------------LA 333

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHT 340
            +  H  R   + +DPPR+G        +       ++Y++C+P SL RD + L S  + 
Sbjct: 334 HVPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISLGYR 393

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +  +  +D +P T H+E      R
Sbjct: 394 LSDIRAYDIYPMTHHVETVAWFTR 417


>gi|297260579|ref|XP_002798309.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
           [Macaca mulatta]
          Length = 566

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/395 (17%), Positives = 118/395 (29%), Gaps = 82/395 (20%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEF--HIWHDGDDLYHIMFDQQ 66
            Y +QL  K     Q++                      EF   +  DG+D        +
Sbjct: 179 PYAEQLERKQLECEQVLQKL------------------CEFLVGVGVDGEDNTVGCRLGK 220

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATI-----------RLEPLLRAKLFQIDYLTSQSD 115
            K           ++ I     +++                         Q+   TS+  
Sbjct: 221 YKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRRR 280

Query: 116 QAIVTLIYH--RLLDDAWRECAIRLRDALHA----RKYQIQLIGRANKTK-------ICL 162
           QA+    +H  +L  +   E    L     A          L       +       + L
Sbjct: 281 QAMAIAYFHPQKLSPEELAELKASLAQHFTAGPGRASGVTCLYFVEEGQRKTPSQEGLPL 340

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNG 221
           +    D  +      L +R   ++F Q N      +   +    +   G  +L++ CG G
Sbjct: 341 EHMAGDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQLDAGSTVLDVCCGTG 400

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LAR   RV+ VE+   +VE AR N   N                           
Sbjct: 401 TIGLALARKVKRVIGVELCPEAVEDARVNAQDNG-------------------------E 435

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILST- 337
            +     + +     +DPPR+GL    +  ++   +I   LY+SCNP +   +   L   
Sbjct: 436 WQGRGRLASQHLVAILDPPRAGLHSKVILAIRRAENIRRLLYVSCNPRAAMGNFVDLCRA 495

Query: 338 --------THTIERLALFDQFPYTRHMECGVLLVR 364
                        +    D FP T H E  +L  R
Sbjct: 496 PSNRVKGTPFRPVKAVAVDLFPQTPHCEMLILFER 530


>gi|224282703|ref|ZP_03646025.1| hypothetical protein BbifN4_02644 [Bifidobacterium bifidum NCIMB
           41171]
          Length = 420

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 137/384 (35%), Gaps = 71/384 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--------IHYRMRAEFHIWH 53
              L+    E QL  K   +   M      ++ +             +H+R R E     
Sbjct: 84  GADLVHVSLEGQLRWKAATISDQMSRLGHVDVTVPVERAEGDTENGGLHWRTRIEMIADD 143

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           DG      M  + + +R+ +D     +                           D L + 
Sbjct: 144 DGMPS---MRRRGSHKRVPLDTMPLAT---------------------------DNLLAV 173

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN--KTKICLDRDYVDERL 171
           +D+  V         D   E   ++R ++   + Q      A     ++     ++ E +
Sbjct: 174 ADREHVW--------DGGFEPGSQIRLSVPEPRKQPIEGNYAVLVDGELRAGNRHLMETV 225

Query: 172 TVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           TV GR   Y    N F Q +         H+++    A  G+    + +LY G G F+L 
Sbjct: 226 TVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLFTLP 285

Query: 227 LARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           LA       R+L+VE  K +V+ A+ N+ A ++ +V                      L 
Sbjct: 286 LATMIAERTRMLSVEGGKTAVKNAQRNLRALNLPDVDARCGDVSAT------------LA 333

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHT 340
            +  H  R   + +DPPR+G        +       ++Y++C+P SL RD + L S  + 
Sbjct: 334 HVPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISLGYR 393

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +  +  +D +P T H+E      R
Sbjct: 394 LSDIRAYDIYPMTHHVETVAWFTR 417


>gi|306824651|ref|ZP_07457996.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304433219|gb|EFM36190.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 370

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 103/295 (34%), Gaps = 26/295 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKTLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L  ++L+ D   +    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLNQLVKDLVNDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIREGVL----DYEFSLSPRAFYQLNPEQTEILYSEAVKALDVSKEDHLIDAYCGV 315

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G      A+    +  ++I   ++E A+ N      +N      +++E      +
Sbjct: 316 GTIGFAFAKKVKSLRGMDIIPEAIEDAKRNAKKMGFDNTHYEAGTAEEIIPRWYQ 370


>gi|167465744|ref|ZP_02330833.1| RNA methyltransferase, TrmA family protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 406

 Score =  166 bits (420), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 56/278 (20%), Positives = 98/278 (35%), Gaps = 28/278 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI------FRSEPIHYRMRAEFHIWHDG 55
              L    Y  QLA K + +R+    +   N  I          P  YR +A+       
Sbjct: 134 GCQLQHMTYSSQLAAKEEIVRESFRRYLGDNAGILIRPIRGMDHPWDYRNKAQLQTEVRD 193

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKL 104
             +   ++   T   + I   +    +IN            L I +    +   +LR  +
Sbjct: 194 SRVITGLYTPGTHHLVDISGCLVQDPVINHVMQVMKEIVSELDIPVYNEKKRSGVLRTIV 253

Query: 105 FQIDYLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            ++   T +    ++T    L  H  L  A  +    + +  H        +    +T  
Sbjct: 254 ARVARSTGKVQLTLITATPFLPKHEKLVSAVHQRMPEVAEIAHNVNPDDTPLVFGERTVH 313

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYC 218
               D ++E L      L +     +F Q N    VH+ ++V  A   + GD  +++ YC
Sbjct: 314 LSGEDRLEETLG----PLRFELSPRAFFQLNPSQTVHLYDYVKEA-AALTGDELVVDAYC 368

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           G G   L LA     V  +EI   +V+ AR N   + +
Sbjct: 369 GTGTIGLWLAPLACEVRGIEIIDDAVQDARRNAERSGL 406


>gi|227875217|ref|ZP_03993359.1| 23S rRNA methyluridine methyltransferase [Mobiluncus mulieris ATCC
           35243]
 gi|227844122|gb|EEJ54289.1| 23S rRNA methyluridine methyltransferase [Mobiluncus mulieris ATCC
           35243]
          Length = 418

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 147/423 (34%), Gaps = 68/423 (16%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           +   Y  Q+ +K+   R+M+  F  P+ +    F+     +R +A+  I      +   +
Sbjct: 1   MGQDYRDQVRDKMRTTRRMLYPFLTPDTKWNSPFQCPQPGFRNKAKMVISGSKKTITLGL 60

Query: 63  FDQQTK-ERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
                    + ++               I   ++ + A        R +L  +    + +
Sbjct: 61  APTPRHPHGVDLEECPLYPESIRATFEPIRQWLLRLGARPYQIDAHRGELRHVLVSANPA 120

Query: 115 DQAIVTLIYH-----RLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
            + +V L+       + +++ W + A  L   L      IQ    A      +I L    
Sbjct: 121 GELMVRLVLRSKAALKRVENTWPDLARELPG-LRVFSVNIQPEHTALIDGPEEIVLSP-- 177

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSL 225
               L + G          +F Q N    + +          +  G + +LYCG G F  
Sbjct: 178 -QRFLPMPGVGTDLFLAPGAFFQTNTAGALALYNQAAEWAARLRPGLVWDLYCGVGGFGF 236

Query: 226 VLARHFD----------------RVLAVEIAKPSVEAARYNIAA---------------- 253
            +A                    +V+ VE+A  ++E A++                    
Sbjct: 237 AVADSLGANPSPGEAGGGEPGSCQVIGVELAGAAIEGAKHAAQLQRATPGQAPHENQTTQ 296

Query: 254 --------NHVNNVKIVRMSSKEFTQAMRR-EREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                   N  +N+   ++ SK     +R    +  +             + V+PPR GL
Sbjct: 297 VTGDTTGSNTTDNITTNQVISKPAANGLRFITADAGKWIKNQKKLVTPDLLVVNPPRRGL 356

Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            +     ++    PH++Y SC   SL  +L  + + + +  L L D FP+TRH+E  VLL
Sbjct: 357 GNELSKWIEKSEIPHVIYSSCYQPSLVDNLHRMKS-YRVTELKLVDMFPHTRHVETIVLL 415

Query: 363 VRK 365
            RK
Sbjct: 416 SRK 418


>gi|257067572|ref|YP_003153827.1| 23S rRNA methyluridine methyltransferase [Brachybacterium faecium
           DSM 4810]
 gi|256558390|gb|ACU84237.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Brachybacterium faecium DSM 4810]
          Length = 388

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 138/388 (35%), Gaps = 38/388 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDL 58
           S TLL     QQLAE  +R+  ++  F  P  +           +R R +  +       
Sbjct: 13  SCTLLDLPRPQQLAEGRERVESLLAPFFAPGTRWGPPLLGPEAGFRARGKMAVGGTAAAP 72

Query: 59  YHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTSQ 113
              +  Q    +      +  G   +      ++   ++ P      R ++  +    S 
Sbjct: 73  VLTLPGQAAGTDLCDCPLYPAGVEEVLEGAKALIRRAQVPPYDVARRRGEIKNVLVTASP 132

Query: 114 SDQAIVTLI--YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVD 168
             Q ++ L+    R L    RE   RL  A  +       I  A+ T +   ++      
Sbjct: 133 DGQHLLRLVLRSERALG-RLREHLPRLLAAHPSLIAVSANIHPAHTTAVEGAQEIHLAGA 191

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLA--ATKGIQG--DLLELYCGN 220
             + V    +       SF Q N  +   +      W     A  G +G   + +LYCG 
Sbjct: 192 ATIPVRTGDVTLFARPQSFLQTNTAVAAQLYRQGAAWAREILAQPGAEGAPRVWDLYCGL 251

Query: 221 GNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G F+L +AR     RV  VE++  +++ AR    A  + +   +   +  +         
Sbjct: 252 GGFALHVARAVPGARVTGVEVSPQAIDGAREAAEAAGLRSATFLAADATRWAA------- 304

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS 336
                +            V+PPR GL     G ++      +LY SCNP +L  DL+ + 
Sbjct: 305 ----TEAAGPKGPPDLAVVNPPRRGLGPELAGWLERSGVADVLYSSCNPATLATDLAAMP 360

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +   I      D FP+T H E  V L R
Sbjct: 361 SL-QITAGRYVDMFPHTAHAEVIVRLRR 387


>gi|150866809|ref|XP_001386532.2| RNA methyltransferase tRNA(m5U54)methyltransferase [Scheffersomyces
           stipitis CBS 6054]
 gi|149388065|gb|ABN68503.2| RNA methyltransferase tRNA(m5U54)methyltransferase [Scheffersomyces
           stipitis CBS 6054]
          Length = 542

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 141/381 (37%), Gaps = 45/381 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
                +  Y++QL  K D + +    F    L                 I  +    Y  
Sbjct: 185 GCQFQMLSYDKQLQLKRDTIVKAYRFFYPELLGELDQSEFGK------VIGCENQYAYRT 238

Query: 62  MFDQQTK--ERMRIDYFMPGSLLINALM--IEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                 K    ++ +    G   +N  M  +++ +     P        I+   + + + 
Sbjct: 239 KLTPHYKVPRVIKNETLSIGLNHVNPTMQVVDLESCAIATPS-------INRALTITRKK 291

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I   + +  L+   R+  I LRD L   K           T+ C       + +T     
Sbjct: 292 IKEEVKNEPLEAQGRQRTILLRDGLRMNKET------GEHTRACYGES--SKVMTEKVED 343

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLAR---HF 231
            +++   +SF Q N  I + +LE++             L++ YCG G F + L++     
Sbjct: 344 FVFQFDPSSFFQNNNSILIPVLEYIKYHIGLGAKSYKYLVDTYCGVGFFGISLSKSIPKE 403

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V  +E+++ S+  A +N   N +   K ++  S       + E   N          +
Sbjct: 404 GKVFGIELSERSINFATHNAMLNGLEVPKRMQFISGSADSMFKNEEFLN-----SGIKGK 458

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-------THTIE 342
              + +DP R G  ++ +  +  +    I+Y+SCN  +  RDLS+ +        ++ + 
Sbjct: 459 ESIVIMDPSRKGSTESFMRQLLEFKPKLIIYVSCNVFTQARDLSLFNKLQEEGSISYRVR 518

Query: 343 RLALFDQFPYTRHMECGVLLV 363
            +  FD FP T+H+E   +L 
Sbjct: 519 DVVGFDFFPQTKHVETVAVLE 539


>gi|323452203|gb|EGB08078.1| hypothetical protein AURANDRAFT_64406 [Aureococcus anophagefferens]
          Length = 918

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 100/347 (28%), Positives = 144/347 (41%), Gaps = 34/347 (9%)

Query: 44  RMRAEFHIWHDGD-DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           R R  F    D       + F ++      +D     S  +N L+  ++A       LRA
Sbjct: 478 RDRCRFSFLADAATGRVALSFAERGAGAAPVDGHALASRRVNDLLPLIVAAANARGALRA 537

Query: 103 KLFQIDYLTSQSD--QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
            L        +    + +V L+Y           A             +   G A +   
Sbjct: 538 NLRAAHVHAPRWAGAEPVVALVYEGPPAGEAAWLAAADALRADCAAAAVGPRG-AGEVVH 596

Query: 161 CLDR-----------DYVDERLTVAG-RTLIYRQIENSFTQPNAGINVHMLEWVLA---- 204
            + R           D+V + L +A  R   Y   E SF+ P    N   L+W++A    
Sbjct: 597 VVGRFKGSTLLSGTNDFVVDALDLADGRRPRYEFPEGSFSHPCGSANERSLDWLVARVDN 656

Query: 205 --ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
             A  G   +LLELYCG GN ++ LA    R +AVE+      AA+ N+  N V N  IV
Sbjct: 657 IRANLGRAPNLLELYCGCGNHTVALAPATGRTVAVEVDARLTAAAKRNLDRNGVANATIV 716

Query: 263 ---RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                +S+   +A+R +R  +           F  + VDPPR GLD AT   + AY H+L
Sbjct: 717 TDTVGASRGVHRALRAKRSGD---------VCFDLLLVDPPRRGLDAATRTCLAAYDHVL 767

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           ++SCNP +L  DL  L  TH +   A+ D FP T H EC V   R+P
Sbjct: 768 FVSCNPAALAEDLKALEPTHAVAAAAVVDGFPGTPHCECLVHFARRP 814


>gi|226355286|ref|YP_002785026.1| (Uracil-5)-methyltransferase [Deinococcus deserti VCD115]
 gi|226317276|gb|ACO45272.1| putative (Uracil-5)-methyltransferase [Deinococcus deserti VCD115]
          Length = 410

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 132/368 (35%), Gaps = 40/368 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           L   +YE QLA K   + + +          N  +   +   YR  A++ +   G     
Sbjct: 75  LAHARYEAQLAYKKAFVEEALSRIAKVRRPVNDTVPSPQAWAYRNTAQYLVTPQG----L 130

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
              +++  + + +D        I A++  +   +          F+   LT +   A++ 
Sbjct: 131 AYRERRGSDPLVVDKDPLVMPQIQAVVDRINPALLDPAT--EVAFRASGLTGEVVAALIG 188

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
               R    A           +     Q      +   ++      + E+      +   
Sbjct: 189 AGETRQYLRASDHLMDA--GVVGVSLAQPAGRRFSAGVRLIAGESEIREQFGQVQVS--- 243

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEI 239
                 F Q N       L ++ AA    +GD  ++LY G+G     LA  F +V  ++ 
Sbjct: 244 -VSATGFAQVNPQAA--GLAYLRAAQLAGEGDHAVDLYGGSGAIGRHLASAFRKVTVLDS 300

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           A  ++   R ++A +  +NV      +  F++                       I VDP
Sbjct: 301 APEALSRGRQDVAVSGEHNVVYRSGDAARFSE------------------LGTDVIVVDP 342

Query: 300 PRSGLDDATVGMVQAY--PHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHM 356
           PR+GLD+     + A     ++Y+SC+P +  RD+  +L     +  +   D +P T H+
Sbjct: 343 PRAGLDEEAREQIHASTADRLVYVSCDPATWARDVGDLLRRGWKLGEVTPHDFYPQTSHV 402

Query: 357 ECGVLLVR 364
           E   +L R
Sbjct: 403 EIVSVLNR 410


>gi|221130274|ref|XP_002158803.1| PREDICTED: similar to trm2 tRNA methyltransferase 2 homolog A
           [Hydra magnipapillata]
          Length = 553

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 61/282 (21%), Positives = 113/282 (40%), Gaps = 43/282 (15%)

Query: 111 TSQSDQAIVTLIYHRLL--DDAWRECAIRLRDALHARKYQI-----------QLIGRANK 157
           +S SD   +  +  + +   + + E  ++LR         +           Q     + 
Sbjct: 220 SSSSDIMAIIQLNPQAICKKEEYDELILKLRKHFTGEFRSVKVTSLYISSSSQKNNNIDT 279

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
            K+    +++ E L      L +R   ++F Q N      + + +    +    D  +L+
Sbjct: 280 FKLIYGSEHITESLL----GLNFRISVDAFFQVNKPAAEILYKTISEWCETSLNDALILD 335

Query: 216 LYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           L CG G   + +A++    V+ +EI   +V+ A +N AAN V N K +  ++++      
Sbjct: 336 LCCGTGTIGICIAKNKRLPVVGIEICIQAVQDANFNSAANGVTNAKFICGAAEKVLH--- 392

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRD 331
              E NR+   +I +       VDPPR+GL    +  +++      I+++SC+P     +
Sbjct: 393 --NEINRINAKNIIA------IVDPPRAGLHKDVLKCLRSCAAIKKIIFVSCSPKQAADN 444

Query: 332 LSILS---------TTHTIERLALFDQFPYTRHMECGVLLVR 364
           L  L               +R    D FP T H E  V L R
Sbjct: 445 LIFLCQKQSKRRAGKPFKTKRAVPIDLFPMTPHCELIVELER 486


>gi|189439124|ref|YP_001954205.1| SAM-dependent methyltransferase [Bifidobacterium longum DJO10A]
 gi|189427559|gb|ACD97707.1| SAM-dependent methyltransferase [Bifidobacterium longum DJO10A]
          Length = 422

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 140/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +     P       +++R R E     
Sbjct: 84  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIERMPGDKAAGGLNWRTRIEM---I 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP              
Sbjct: 141 ADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEP-------------- 186

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                         +  +  E    + D   A      L+      ++      + E++T
Sbjct: 187 -----------GSQIRLSVPEPRGEIVDTAAADDNYAVLVDG----ELRAGSQLLTEQVT 231

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 232 INGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 291

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A ++N+V                      L  
Sbjct: 292 ATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLDH 339

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + +
Sbjct: 340 VPAHLAKPDVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYEL 399

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E  VL  R
Sbjct: 400 KDIRAFDIYPMTHHVETVVLFTR 422


>gi|321263230|ref|XP_003196333.1| tRNA methyltransferase [Cryptococcus gattii WM276]
 gi|317462809|gb|ADV24546.1| tRNA methyltransferase, putative [Cryptococcus gattii WM276]
          Length = 612

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 133/433 (30%), Gaps = 109/433 (25%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--------LQIFRSEPIHYRMRAEFHI-- 51
              L    Y  QL  K+  ++     F              I   +   YR +   H   
Sbjct: 212 GCQLQPVPYHLQLQHKLRTVQLAYERFSTLPSSLVPTILPTIGSPKQWGYRTKITPHFDA 271

Query: 52  ------------------------------WHDGDDLYHIMFDQQTKERMRIDYFMPGSL 81
                                            G +       +     M I+     + 
Sbjct: 272 PPKWAKEKLTKLQTEAASTGEEEALNAEDEARKGWECRVGFERKGKPGVMDIEECPIATP 331

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
           ++N            +  L     +   ++ +    I+       L DA  E      + 
Sbjct: 332 VLN-----------TQLTLSRAQVKSSIMSYKKGATIL-------LRDALPEP-----NP 368

Query: 142 LHARKYQIQLIGRANKTKICL--DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
           L   +    +     +  I +   +  V ER+       ++     SF Q N  I + + 
Sbjct: 369 LPTAENPWNVQEAGEEQHIAVTDHKAQVYERVGPW----LFSFTAGSFFQNNNSILIPLT 424

Query: 200 EWVLAATKGIQGD--------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            +V  A               L++ YCG+G F + L+  F  V  VEI+  S+EAA+ N 
Sbjct: 425 TYVQEAIFPPNAKPNLPRPTHLVDTYCGSGLFGVTLSPSFTAVAGVEISSISIEAAKRNA 484

Query: 252 AANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             N + +    +   +++    +  +    R             + VDPPR G D   + 
Sbjct: 485 EMNGLKDKTTWLCGKAEDIFGGLAEQGFAGRH----------SCVVVDPPRKGCDTPFLD 534

Query: 311 MVQAYPH--ILYISCNPDSLCRDLSIL-------------------STTHTIERLALFDQ 349
            +  +    I+Y+SCN  +  RD+  L                      + +E L  FD 
Sbjct: 535 QLLNFRPLTIVYVSCNVHTQARDVGYLVHESNKRGQASQGKEEAMKGWKYIVESLRGFDL 594

Query: 350 FPYTRHMECGVLL 362
           FP T H+E   +L
Sbjct: 595 FPQTAHVESVAVL 607


>gi|311896063|dbj|BAJ28471.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 558

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 133/372 (35%), Gaps = 60/372 (16%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQI----FRSEPIH----------YRMRAEFHIWHDGDDL 58
           Q   K   L + +        +        EP+           +R R ++ +  +G   
Sbjct: 222 QRKLKAAVLTEQLAKLAGLTPEEARWDGSVEPVGGKLPAGEVPAWRSRVQYAVDEEG--- 278

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
              +   ++ +   +D  +  +  +  L IE      +         +    T  SD+ +
Sbjct: 279 VVGLRKHRSHDVQPVDRCLIAAPGVTELGIESRDWTGVAS------VEAVAATGSSDRQV 332

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +                 +L      R+  I  +   +       R +V ER        
Sbjct: 333 ILR----------PRPGEQLPLVELDRETSIARVDDQDLFHRVHGRTFVRER----AAGR 378

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---V 234
            +R     F Q +      +++ VL       G+  L+LYCG G F+  LA        V
Sbjct: 379 TWRVSNGGFWQIHPEAPDTLVDAVLTGLDPQWGESALDLYCGVGLFAGALAERVGEEGAV 438

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L +E  K +V  AR+N+AA  +  V+I     +              L    I S     
Sbjct: 439 LGIESGKQAVLDARHNLAA--LEQVRIECDKVETL------------LPRTGITST--DL 482

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
           I +DPPR+G    TV  + +     I Y++C+P +L RDL+      + +  L  FD FP
Sbjct: 483 IVLDPPRAGAGRETVAHLSSLEARRIAYVACDPAALARDLAFFREGGYRLVSLRAFDLFP 542

Query: 352 YTRHMECGVLLV 363
            T+H EC  +L 
Sbjct: 543 MTQHFECVAILE 554


>gi|309790389|ref|ZP_07684954.1| (Uracil-5)-methyltransferase [Oscillochloris trichoides DG6]
 gi|308227581|gb|EFO81244.1| (Uracil-5)-methyltransferase [Oscillochloris trichoides DG6]
          Length = 394

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 133/392 (33%), Gaps = 58/392 (14%)

Query: 2   SGTLLIDQ-YEQQLAEKVDRLRQMMLAFQVPNLQ--------IFRSEPIHYRMRA----- 47
            G    D+ Y  Q+A K + L ++  A  +  +         +   +P  YR R      
Sbjct: 31  GGCAYQDRAYAGQVAAKREALERLFTAAGLSEIGYDATTFAVVASPDPYTYRTRMDYVAT 90

Query: 48  --EFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLI--------NALMIEMMATIRLE 97
              F +   G   Y I       E        P +           N L +        E
Sbjct: 91  KGRFGLRARGKFNYII-------ELSTCHLIPPAAFAAAHAVWVRANELGLPDYNIRSHE 143

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
             LR  + +     S  DQ ++ ++       +A  E A           +   L     
Sbjct: 144 GFLRYVVVR----RSPDDQLLIAIVTAEGPYAEAAEELARTALAQAGVVGFHWLLNNT-- 197

Query: 157 KTKICLD---RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
           +T +      + +    L +           N+F Q N  +  H+L  V  A  G    +
Sbjct: 198 RTDLSFGSPLQHWGAATLPMRVGATHLMIGPNTFFQNNVHLLDHLLAAVGEA-VGPVASV 256

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +LY G G   + LA    +V++VE    S   A  +  A  V N++ +      + +  
Sbjct: 257 ADLYGGVGTIGMHLAPQVGQVISVEEVAESAALAAQHSVAQGVTNLQAINQDVLSYLRTQ 316

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331
                             +    VDPPR GL       +   A   ++Y+SCNP +L  D
Sbjct: 317 --------------APAAWPVAVVDPPRIGLGPEVCAELLRIAPQRLVYVSCNPITLVED 362

Query: 332 LSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           L IL   + +  L  +D FP+T H+E   +L 
Sbjct: 363 LRILGAHYRLRHLTGYDMFPHTPHVEVLAVLE 394


>gi|149244082|ref|XP_001526584.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146448978|gb|EDK43234.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 407

 Score =  165 bits (419), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/357 (21%), Positives = 122/357 (34%), Gaps = 60/357 (16%)

Query: 52  WHDGDDLYHIMFDQQ---TKERMRIDYFMPGSLLINALMIEMMATIRL--EPLLRA--KL 104
           W  G+               + M I+    G+ ++N  +           +   R    L
Sbjct: 68  WRTGEKAKEGKIGADFGPLGQIMDIEECTIGTKIVNIGLENERHRFENAFKEYKRGATVL 127

Query: 105 FQIDYLTSQS---DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            + D    Q+   +    T       D          RD L          G     K C
Sbjct: 128 LREDTKCMQNAVQNTGDTTDTDEVKNDAKESVIGEASRDELGEVSSIKVEQGDQEVVKTC 187

Query: 162 LD--RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------- 212
           +   R  V E +        +      F Q N  I   + ++V         +       
Sbjct: 188 VTNPRQIVQEIIG----PYRFEFSAGEFFQNNNSILPIITKYVRDNLFSNPINTTTNTTT 243

Query: 213 ----------------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
                           L++ YCG+G FS+  + +  +V+ VE++  SV+ AR+N   N++
Sbjct: 244 NITTTTTNTGSSSPNYLVDAYCGSGLFSITCSTNVTKVIGVEVSADSVKFARHNATLNNI 303

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            N   +   ++E              KDID  S +   I  DPPR G DD  +  +  Y 
Sbjct: 304 KNSHFIVGKAEEIF------------KDIDTPSEQTSVIL-DPPRKGCDDVFLNQLSEYK 350

Query: 317 --HILYISCNPDSLCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              I+YISCN  S  RD+            + +E +  FD FP T H+E   +L  K
Sbjct: 351 PAKIVYISCNVHSQARDVEWFLNNTKNGELYKVESIKGFDFFPQTHHVESVAVLSMK 407


>gi|311064025|ref|YP_003970750.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum
           PRL2010]
 gi|310866344|gb|ADP35713.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium bifidum
           PRL2010]
          Length = 420

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 137/384 (35%), Gaps = 71/384 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--------IHYRMRAEFHIWH 53
              L+    E QL  K   +   M      ++ +             +H+R R E     
Sbjct: 84  GADLVHVSLEGQLRWKAATISDQMSRLGHVDVTVPVERAEGDTENGGLHWRTRIEMIADD 143

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           DG      M  + + +R+ +D     +                           D L + 
Sbjct: 144 DGMPS---MRRRGSHKRVPLDTMPLAT---------------------------DNLLAV 173

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN--KTKICLDRDYVDERL 171
           +D+  V         D   E   ++R ++   + Q      A     ++     ++ E +
Sbjct: 174 ADREHVW--------DGGFEPGSQIRLSVPEPRKQPIEGNYAVLVDGELRAGNRHLMETV 225

Query: 172 TVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLV 226
           TV GR   Y    N F Q +         H+++    A  G+    + +LY G G F+L 
Sbjct: 226 TVNGRDFQYMVDANGFWQVHRQAPVMLAGHVIDLANKALDGMTSACIWDLYSGAGLFTLP 285

Query: 227 LARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           LA       R+L+VE  K +V+ A+ N+ A ++ +V                      L 
Sbjct: 286 LATMTAERTRMLSVEGGKTAVKNAQRNLRALNLPDVDARCGDVSAT------------LA 333

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHT 340
            +  H  R   + +DPPR+G        +       ++Y++C+P SL RD + L S  + 
Sbjct: 334 YVPAHLSRPDLVVLDPPRAGAHAKVCRQIAQAGAKDVIYVACDPTSLARDTATLISLGYR 393

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +  +  +D +P T H+E      R
Sbjct: 394 LSDIRAYDIYPMTHHVETVAWFTR 417


>gi|237833067|ref|XP_002365831.1| tRNA (Uracil-5-)-methyltransferase domain-containing protein
           [Toxoplasma gondii ME49]
 gi|211963495|gb|EEA98690.1| tRNA (Uracil-5-)-methyltransferase domain-containing protein
           [Toxoplasma gondii ME49]
          Length = 426

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 62/262 (23%), Positives = 102/262 (38%), Gaps = 34/262 (12%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI----- 179
           R +++   E   ++     A         +   T +   RD     +T    TL      
Sbjct: 136 RSVNEKLAEIRKQIAVQAQAVSPDAAEARQKGATVLL--RDTGLNSVTSDPGTLCASTGI 193

Query: 180 ------YRQIENSFTQPNAGINVHMLEWVLAA---------TKGIQGDLLELYCGNGNFS 224
                 YR     F Q N  +   ++  V             +     LL+ YCG G F+
Sbjct: 194 DGLHCWYR--AGDFFQVNRRVLPLLVSHVREQLRDLREVPGQQPPHRRLLDCYCGVGLFA 251

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L     FD V+  ++   S+E A+YN   N     +     +K F ++            
Sbjct: 252 LACHDDFDEVVGFDVCSSSIELAKYNAQFNSKWRARFEVSDAKNFFESFSA--------G 303

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPDSLCRDLSILSTTHTIE 342
                     + +DPPR G D   +  +++  P  I+YISC+P +  RDL  +   +T++
Sbjct: 304 HSSSDKSRLFVVLDPPRKGCDSEFLLSLLKLKPERIVYISCHPATQARDLKAVLPLYTVK 363

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +  FD FP+TRH+EC + L R
Sbjct: 364 NIQPFDMFPHTRHIECVITLER 385


>gi|317482482|ref|ZP_07941499.1| (uracil-5)-methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916142|gb|EFV37547.1| (uracil-5)-methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 422

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 141/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +     P       +++R R E     
Sbjct: 84  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIERMPGDKAAGGLNWRTRIEM---I 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP  + +L   +    
Sbjct: 141 ADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEPGSQIRLSMPEPRGE 200

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
             D A     Y  L+D   R  +  L                              E++T
Sbjct: 201 IVDTAAADDNYAVLVDGELRAGSQLL-----------------------------TEQVT 231

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 232 INGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 291

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A ++N+V                      L  
Sbjct: 292 ATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLDH 339

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + +
Sbjct: 340 VPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYEL 399

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E   L  R
Sbjct: 400 KDIRAFDIYPMTHHVETVALFTR 422


>gi|295836075|ref|ZP_06823008.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. SPB74]
 gi|197695167|gb|EDY42100.1| tRNA (Uracil-5-)-methyltransferase [Streptomyces sp. SPB74]
          Length = 447

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 82/381 (21%), Positives = 139/381 (36%), Gaps = 64/381 (16%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ-------IFRSE----PIH----YRMRAEFHIWHDGD 56
            Q   K D LR+ +        +       +  +E    P      +R R ++ I  +G 
Sbjct: 106 AQRRLKADVLREQLERLAGLTPEQANWDGTVLPAEGDKLPAGEVPAWRTRVQYAIDEEG- 164

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                +   ++ E   +D  +  +  ++ L IE      ++        +    T   D+
Sbjct: 165 --RAGLRRHRSHEVEPVDRCLIAAEGVSELGIESRDWSGMD------TVEAIAATGSQDR 216

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-CLDRDYVDERLTVAG 175
            +V                 RL      R   +  +   +        R +V ER     
Sbjct: 217 QVVL----------TPRPGARLPLVQLDRPVSVLRVDEKDGGVHRVHGRAFVRER----A 262

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR- 233
               +R     F Q +      ++   +      +G+  L+LYCG G F+  LA      
Sbjct: 263 DEHTWRVGNGGFWQVHPKAADTLVRAAMQGLTPRKGETALDLYCGVGLFAGALADRVGEK 322

Query: 234 --VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             VL +E +K +VE AR+N+A     +   VR+   +  Q + R                
Sbjct: 323 GAVLGIETSKRAVEDARHNLA-----DFPRVRVEQGKVDQILPRTGI-----------TE 366

Query: 292 FKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFD 348
              I +DPPR+G   +TV  +       I YI+C+P +L RDL   +   + +  L  FD
Sbjct: 367 TDLIVLDPPRAGAGKSTVRHLTTLTPRRIAYIACDPAALSRDLKHFAENGYRVRVLRAFD 426

Query: 349 QFPYTRHMECGVLLVRKPSGW 369
            FP T+H EC  +L   P+G 
Sbjct: 427 LFPMTQHFECVAILE--PAGK 445


>gi|320593815|gb|EFX06218.1| tRNA methyltransferase [Grosmannia clavigera kw1407]
          Length = 671

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 141/434 (32%), Gaps = 101/434 (23%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSE-PIHYRMRAEFHI- 51
           SG    +  Y++QL  K   + +    F           L    S     YR +   H  
Sbjct: 266 SGCQYQMLDYDEQLRIKRRVVERAYRHFSRLPAASVPAVLDTVASPLQYGYRTKLTPHFD 325

Query: 52  -----WHDGDDLY---------HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
                 H     +          +      +  + I++   G+  + A M    + +  +
Sbjct: 326 GPPGFRHKNRAGHTLPAVPDIGFMQKGGGPRTTLDIEHCPIGTAAVAAGMTRERSRVARD 385

Query: 98  ---------PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ 148
                     LLR    ++     +  +A+                A+R+    H     
Sbjct: 386 FGSYTRGATILLRESTRRVPRGDKEEGEAV-----------EEDPLAVRVEADGHTDIKT 434

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
                 A  T      +YVD+ L        +     SF Q N  I   +  +V A    
Sbjct: 435 CITDNNATST------EYVDDYL--------FTNPAGSFFQNNNSILPVLTAYVRANVLR 480

Query: 209 IQGD---------LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV-- 256
              D         L++ Y G+G F++ LA       + ++IA+ S+  AR N A N +  
Sbjct: 481 PASDDAAQKPIRFLVDAYSGSGLFTITLASTLAGGSIGIDIAEQSIAYARANAALNQLPP 540

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           +  + +   + +   ++           +         + +DPPR G D   +  + AY 
Sbjct: 541 DRCRFIAADAAQLFASVSGGD-----AAVASSPPDETVVVLDPPRKGCDAPFLRQLLAYA 595

Query: 317 --HILYISCNPDSLCRDLSILSTT------------------------HTIERLALFDQF 350
              I+Y+SCN  +  RD+ +L                           + IE L  FD F
Sbjct: 596 PARIVYVSCNVHTQARDVGMLVRGRVDGFAGEGLPRPGQDDVVAHGTRYAIESLRGFDFF 655

Query: 351 PYTRHMECGVLLVR 364
           P T H+E   +L R
Sbjct: 656 PQTAHVEGIAVLNR 669


>gi|169837711|ref|ZP_02870899.1| hypothetical protein cdivTM_11537 [candidate division TM7
           single-cell isolate TM7a]
          Length = 430

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 134/361 (37%), Gaps = 41/361 (11%)

Query: 16  EKVDRLRQMMLAFQ---VPNLQIFRSE-PIHYRMRAEFHIWHDGDDLYH--IMFDQQTKE 69
            K   + +            +++F       YR + EF  W D D        F + TK 
Sbjct: 94  YKAALIEEAFEMHNIVLPNPIEVFTDNNEYGYRNKIEFSWWWDTDLNQLDLAFFRRSTKG 153

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPL----LRAKLFQIDYLTSQSDQAIV-TLIYH 124
           ++ +         IN   I +   +R        L+  L +       + Q  V T  + 
Sbjct: 154 KIPVTKTSLAPNAINQKAINIRNILRNRGTSGRDLKTLLIRCSRHGQTAAQLYVKTEDFP 213

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           +  +D +++  +   + +++       I      K      +  E L        +    
Sbjct: 214 KFSEDEFKKSELDSLEIIYSNPKSPASIITKRLQK------WGIEALQDEILNTRFNYAT 267

Query: 185 NSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             F Q N       +L+  + +      ++++LY G G+  L +    + V  VEI + +
Sbjct: 268 EGFFQINLPVYEQALLD--MKSWINHDINVVDLYSGVGSIGLTI--GGNNVTLVEINENA 323

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   + NI      N K +   S++  + + ++                  I VDPPR+G
Sbjct: 324 VREMQKNIKILG-KNAKAILAPSEKALEYISKD----------------SLIIVDPPRAG 366

Query: 304 LDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           L    +  +  +    I+Y+SCNP +  RD++ LS  + I+    ++ FP T H+E   +
Sbjct: 367 LHKDVIDKLISEKPKRIIYLSCNPVTQARDIAKLSEKYGIKAHRGYNFFPKTPHIEHLAI 426

Query: 362 L 362
           L
Sbjct: 427 L 427


>gi|312212301|emb|CBX92384.1| similar to tRNA(m5U54)methyltransferase [Leptosphaeria maculans]
          Length = 595

 Score =  165 bits (418), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 70/401 (17%), Positives = 139/401 (34%), Gaps = 57/401 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR------SEPIHYRMRAEFHIWHDG 55
                +  Y+ QL  K   + +    F     ++          P+ Y  R +     DG
Sbjct: 203 GCQFQMLPYDYQLQHKKSIVEKAYKNFSNLPPELIPAIGDTIGSPLQYGYRTKLTPHFDG 262

Query: 56  DDLYHIMFDQQT-----KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
                    +       KE   I +   G+ +   +    + T  +    + +  ++   
Sbjct: 263 PPDARRSDGRNGIKRTFKEVPPIGFMKKGTRITLDIEDCPIGTDAIRAGNKRERRRVAET 322

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE- 169
            S   +    L+       A  E            +    ++       I   +  V E 
Sbjct: 323 LSTYQRGATILLRESTTRIAKSEYD-------STTEKDPDVVIEDRGNNILHRKVCVTEP 375

Query: 170 --RLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQ-GDLLELYCGNGN 222
             + T       +    +SF Q N  I      ++ E +L +T   +   L++ Y G+G 
Sbjct: 376 NAKTTEYVDDFQFVNPASSFFQNNNSILPIFTQYIREHILPSTPNHKITHLIDAYSGSGL 435

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRREREFN 280
           F++ L+  F   L ++I+  S++ A  N   N +  ++ + +   +     +++   E  
Sbjct: 436 FTITLSSLFKSSLGIDISTSSIDCATTNAELNSLPPSSTRFIAADAAALFASIKSPAE-- 493

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL--- 335
                         + +DPPR G D++ +  +       ++Y+SCN  +  RD+ +L   
Sbjct: 494 -----------ETVVMIDPPRKGCDESFLRQLVEYGPARVVYVSCNVHTQARDVGVLVGG 542

Query: 336 -----------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
                         + +E L  FD FP T H+E   +L RK
Sbjct: 543 MDGVDGGFGKGQGCYEMESLRGFDFFPQTGHVEGVAVLRRK 583


>gi|297566568|ref|YP_003685540.1| (Uracil-5)-methyltransferase [Meiothermus silvanus DSM 9946]
 gi|296851017|gb|ADH64032.1| (Uracil-5)-methyltransferase [Meiothermus silvanus DSM 9946]
          Length = 398

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 131/372 (35%), Gaps = 56/372 (15%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QL  K   + + ++        +   +P    ++YR  A++ +   G   Y      
Sbjct: 66  YPAQLPLKQGFVHEALVRIAKLEFPLSPIQPSPDALNYRTAAQYALHPLGGLAY---RKP 122

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIR---LEPLLRAKLFQIDYLTSQSD------- 115
            + E  +I+     +  +      +         E + R  L++   L            
Sbjct: 123 NSHELAKIEQDPLIAPPLQEAFRLLSHGALSSLDEVVFRGSLYEGRTLVGLIGGEARFCR 182

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +   TL+   L    W E + + R              R     +  +R  ++E   V  
Sbjct: 183 RTAQTLVQEGLAGVVWAEASPKGR-------------FRGRVQHLAGERGLLEEYGGVLS 229

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
                     SF Q N      +L    A   G     +ELY G+G   L LA  F  V+
Sbjct: 230 -----TVDAQSFAQVNPKAAG-LLYREAAQIAGGGERAVELYAGSGVLGLHLAERFCEVI 283

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           A+EI K +V     +     V++++  R  S+E                          +
Sbjct: 284 AIEINKDAVRRGEADRERLGVSHLRFHRGDSRELYTFTPA-----------------DLV 326

Query: 296 FVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
            VDPPRSGL    +  +       +LY+SC+P +  RD+  L+   + +     +D +P+
Sbjct: 327 AVDPPRSGLSAEVMQAIVQARPKRVLYLSCDPATWARDVRGLTQAGYRLAFARPYDFYPF 386

Query: 353 TRHMECGVLLVR 364
           T H+E   LL R
Sbjct: 387 THHVEVLSLLER 398


>gi|325970639|ref|YP_004246830.1| (uracil-5)-methyltransferase [Spirochaeta sp. Buddy]
 gi|324025877|gb|ADY12636.1| (Uracil-5)-methyltransferase [Spirochaeta sp. Buddy]
          Length = 383

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 145/372 (38%), Gaps = 79/372 (21%)

Query: 9   QYEQ---QLAEKVDRLRQMMLAFQVPNLQIFRSEP------IHYRMRAEFHIWHDGDDLY 59
           QY     Q A K   +   +          F  EP       +YR R  FH+      + 
Sbjct: 78  QYADAPYQAACKEAIVLDNLSRLGGLQRDAFSVEPSVTGPAWNYRNRVRFHVDLTHKTV- 136

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                +++ + +RI+     +  +NAL                                 
Sbjct: 137 -GFLRRKSSDLVRIESCPILTGRLNAL--------------------------------- 162

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQ-IQLIGRANKTKICLDRDYVDERLTVAGRTL 178
            L   + L +A R    RL  A H  K   +++   A++ +I L    +D+ +++   + 
Sbjct: 163 -LSDPKPLFEAAR----RLMFANHGGKTDYLEVPAFASEDEISL----LDKEISITVGSK 213

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
            +      F Q N  +   + ++V +   G    +++LY G G FS  LA+   R++AVE
Sbjct: 214 RFFVTSEVFFQSNHFLTASLGDYVASQAIGQT--VMDLYSGVGTFSAFLAQPLRRLIAVE 271

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
             K  +  A+      H+   +    + + + +                 +    T+ VD
Sbjct: 272 KQKQCIALAKK-----HLTGCEFFTDAVELWAKR---------------QAIAVDTVVVD 311

Query: 299 PPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           PPR+GL++    ++ ++    ++Y+SCN  +L RDL    S  +T   + +FD +P T H
Sbjct: 312 PPRTGLEETVPSLIASWAPKRVIYVSCNSVTLARDLQRFASEGYTTTTVKMFDLYPQTFH 371

Query: 356 MECGVLLVRKPS 367
            E  V+L R+ +
Sbjct: 372 HEVVVVLDRREN 383


>gi|289706908|ref|ZP_06503245.1| TRAM domain protein [Micrococcus luteus SK58]
 gi|289556343|gb|EFD49697.1| TRAM domain protein [Micrococcus luteus SK58]
          Length = 490

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 144/376 (38%), Gaps = 36/376 (9%)

Query: 13  QLAEKVDRLRQMMLAFQ--VPNLQIF----RSEP--IHYRMRAEFHIWHDGDDLYHIMFD 64
           Q   K    R  +          ++       EP    +R R  F +   G   +  M  
Sbjct: 112 QRRLKAQVFRDTVHRIADLAVEPEVCFAGSEDEPTGQRWRTRNAFAVTPQG---HIAMHA 168

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            ++   + +     G   ++AL    +         R  +      +      +VT    
Sbjct: 169 YRSATLLPVRNMPLGVPALDALA---LWDWDFTGAARVDVAT--PASGSRPLVLVTPTPQ 223

Query: 125 RLLDDAW-RECAIRLRDALHA----RKYQIQLIGRAN----KTKICLDRDYVDERL-TVA 174
              D+        R+R A +A        + L G       K +    + +V+E + +  
Sbjct: 224 TRADEVKLGRLRTRIRQAANACGVDVSTGLALPGPKRFLPVKVERITGKTWVEETVESER 283

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD- 232
           G T  +R   + F Q +      +++ VL   +   G ++ +LY G G FS  LA     
Sbjct: 284 GGTKRFRVTGDGFWQVHQHAPATLVDAVLEDARVEPGQVVADLYGGAGLFSAYLADAVGP 343

Query: 233 --RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             RV +VE ++ + + AR N+  +      ++   + +   +  +  E   + D  +   
Sbjct: 344 EGRVYSVEASRQASKDARRNL--HDQPQASVLNGPTDKVLGSWLKYPERP-VADGGLGGA 400

Query: 291 RFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
              T+ +DPPR+G     +  + A     I+Y+SC+P S  RDL+ L    + +ER  +F
Sbjct: 401 ALDTVVLDPPRAGAGRRAIERILALEPGRIVYVSCDPASFARDLAWLRDGGYEVERARVF 460

Query: 348 DQFPYTRHMECGVLLV 363
           D +P T H+E   +LV
Sbjct: 461 DLYPDTHHLESVTVLV 476


>gi|289614485|emb|CBI58769.1| unnamed protein product [Sordaria macrospora]
          Length = 666

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/420 (16%), Positives = 131/420 (31%), Gaps = 78/420 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS------EPIHYRMRAEFHIWHDG 55
                +  Y +QL  K   + +    F   + ++          P+ Y  R +     DG
Sbjct: 265 GCQFQMLDYSEQLKHKRSIVVKAYKNFSNLSPELVPEILDTIGSPLQYGYRTKLTPHFDG 324

Query: 56  --------------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
                         +        +  ++ M I+     +  + A +      +       
Sbjct: 325 PPGGNRRGFKKPMEEMPPIGFTPKGLRKVMDIEDCPIATDAVRAGLTAERERM------- 377

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           +K F      +       T    +  D +           L          G     K C
Sbjct: 378 SKEFASYTRGATILLRESTKRVPKPADGSEIPTPDLKPGVLPTPIVTPSADGSYTDFKTC 437

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG---------- 211
           +  +      T      I++    SF Q N  I     + +        G          
Sbjct: 438 ITDNNA--TSTEYIDNFIFQNPAGSFFQNNNSILSPFTDHIRQHILPPPGSLPEGAKPIK 495

Query: 212 DLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
           +L++ Y G+G F++  +  F    + ++IA  S++ AR N   N ++    K +   + +
Sbjct: 496 NLIDAYSGSGLFTITQSSLFPGGSIGIDIADKSIDFARRNARLNGLDESQCKFIAADAPQ 555

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPD 326
             ++            +         + +DPPR G D + +  +   A   ++Y+SCN  
Sbjct: 556 LFES------------VSSLDADETVVVLDPPRKGCDASFLRQLMQFAPRRVVYVSCNVH 603

Query: 327 SLCRDLSILSTT----------------------HTIERLALFDQFPYTRHMECGVLLVR 364
           +  RD+ +L                         + IE +  FD FP T H+E   +L R
Sbjct: 604 TQARDVGVLVRGRVGDTFGEAFVDPTEGEKKMSRYVIESIRGFDFFPQTGHVEGVAILNR 663


>gi|114799366|ref|YP_761460.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Hyphomonas
           neptunium ATCC 15444]
 gi|114739540|gb|ABI77665.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Hyphomonas
           neptunium ATCC 15444]
          Length = 416

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 135/354 (38%), Gaps = 31/354 (8%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           A K D + + +     +    + + + P   R RA F     G  +      +++ E + 
Sbjct: 89  AFKRDLIVRALKTRGLEAEVTETWITPPAS-RRRATFTARKSGKTIMVGFHGRKSHELIA 147

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           ++        I A + ++   +      +  L  +   T+      VT I  +    A  
Sbjct: 148 LEECPVARPAIVAALPKLAGILAPLFSGKEDLSLLVTETASGLDLHVTGIPKQATRLARA 207

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E       AL A   ++ L        +  +R     RL +   +L+       F Q +A
Sbjct: 208 EVTSA---ALRAGFARVSL----EGEDVLTERP---PRLPIGAASLL--PPPGGFLQASA 255

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                 +  ++    G      +L+ G G F+L LA     V A E  +P++EA R   A
Sbjct: 256 EAETE-IARLVLGHLGGAKHAADLFSGCGTFALRLAERI-PVFAAESGRPAIEALRA--A 311

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           AN    +K V    ++  +      E  R          F  + +DPPR+G       + 
Sbjct: 312 ANAAPGLKPVTADVRDLFRNPLAAVELAR----------FDGLVLDPPRAGASAQAAEIA 361

Query: 313 QAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++  P + Y+SC+P +L RDL  L    + + R    DQF ++ H+E   LL +
Sbjct: 362 RSTVPRVAYVSCDPATLARDLRALVDGGYRLLRAHPVDQFLWSAHVEAVALLEK 415


>gi|58259996|ref|XP_567408.1| tRNA methyltransferase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134116134|ref|XP_773238.1| hypothetical protein CNBJ0170 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50255860|gb|EAL18591.1| hypothetical protein CNBJ0170 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57229458|gb|AAW45891.1| tRNA methyltransferase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 613

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/431 (17%), Positives = 132/431 (30%), Gaps = 105/431 (24%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--------LQIFRSEPIHYRMRAEFHI-- 51
              L    Y  QL  K+  ++     F              I   +   YR +   H   
Sbjct: 213 GCQLQPVPYHLQLQHKLRTVQLAYERFSTLPSSLVPTILPTIGSPKQWGYRTKITPHFDA 272

Query: 52  ------------------------------WHDGDDLYHIMFDQQTKERMRIDYFMPGSL 81
                                            G +       +     M I+     + 
Sbjct: 273 PPKWAKEKLVKLQAEAASPGEEEALNAEDEARKGWECRVGFERKGKPGVMDIEECPIATP 332

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
           ++N  +    A ++   +                +    L+   LL+      A      
Sbjct: 333 VLNTQLTLSRAQVKSSIM-------------SYKKGATILLRDALLEPEPLPTAEN---- 375

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
                + +Q  G      +   +  V ER+       ++     SF Q N  I + +  +
Sbjct: 376 ----PWNVQEAGEEEHVAVTDHKAQVYERVGPW----LFSFTAGSFFQNNNSILIPLTTY 427

Query: 202 VLAATKG--------IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           V  A               L++ YCG+G F + L+  F  V  VEI+  S+EAA+ N   
Sbjct: 428 VQEAIFAPNPNPNLPRPTHLVDTYCGSGLFGITLSPSFIAVAGVEISSLSIEAAKRNAEM 487

Query: 254 NHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           N + +    +   +++    +  +    R             + VDPPR G D   +  +
Sbjct: 488 NGLKDKTTWLCGKAEDIFGGLAEQGFAGRH----------SCVVVDPPRKGCDTPFLDQL 537

Query: 313 QAYPH--ILYISCNPDSLCRDLSIL-------------------STTHTIERLALFDQFP 351
             +    I+Y+SCN  +  RD+  L                      +T+E L  FD FP
Sbjct: 538 LNFRPLTIVYVSCNVHTQARDVGYLVHESNKRGQVSEGKEEGVKGWKYTVESLRGFDLFP 597

Query: 352 YTRHMECGVLL 362
            T H+E   +L
Sbjct: 598 QTAHVESVAVL 608


>gi|15888078|ref|NP_353759.1| RNA methyltransferase [Agrobacterium tumefaciens str. C58]
 gi|50401625|sp|Q8UHE7|Y735_AGRT5 RecName: Full=Uncharacterized RNA methyltransferase Atu0735
 gi|15155704|gb|AAK86544.1| RNA methyltransferase [Agrobacterium tumefaciens str. C58]
          Length = 416

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 136/356 (38%), Gaps = 35/356 (9%)

Query: 15  AEKVDRLRQMM--LAFQVP--NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           A K + +   +       P  +L I R      R RA F        L        +   
Sbjct: 90  AFKRELVVSALRSKGLTPPVDDLVICRPGE---RRRAVFAARKTEKGLLLGFSQANSHHI 146

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + I+     S  I +    + A I L  +  A+ F+I  L + S   I       + D  
Sbjct: 147 VAIEECPVTSPGIVSRFDAIRA-IGLSMVANAEPFRITVLETLSGLDISVEGIKSVNDKQ 205

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            R     +       +  +         K  ++              +        FTQ 
Sbjct: 206 RRTLTETVLAMRGIARVSLSGEILIEPQKPIIE-----------FGGIPVSPPAGGFTQA 254

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                  M E ++ A  G    + +L+CG+G F+L LAR   RV AVE    +++A   +
Sbjct: 255 TKQAEDAMAE-LMLAHVGKSKRIADLFCGSGTFALRLAR-IGRVHAVEAEDKALKA--LD 310

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            AA +   +K V +  ++     RR    + LK+       +  +  DPPR+G +     
Sbjct: 311 FAARNTQGLKPVSVEKRDL---FRRPLMTSELKN-------YDAVVFDPPRAGAEVQCKE 360

Query: 311 MVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           + ++    I+ +SCNP +L RDL+IL    + + R+   DQF ++ H+E   +L +
Sbjct: 361 LARSTVKKIVAVSCNPLTLARDLAILTEGGYRVTRVTPVDQFLWSPHVEAVAVLEK 416


>gi|301786386|ref|XP_002928615.1| PREDICTED: LOW QUALITY PROTEIN: tRNA (uracil-5-)-methyltransferase
           homolog [Ailuropoda melanoleuca]
          Length = 544

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/422 (16%), Positives = 139/422 (32%), Gaps = 78/422 (18%)

Query: 9   QYEQQLAEK-------VDRLRQMMLAFQVPNL---------------QIFRSEPI-HYRM 45
            YE+QL  K       + RL   +      N+                I  S  I  YR 
Sbjct: 135 SYEEQLKVKFEAQKKILQRLESYLQKLNGVNVTTSASRAEGLSCLLHPIIPSPVINGYRN 194

Query: 46  RAEFHIWHDGDDL----YHIMFDQQTKERMRI-----DYFMPGSLLINALMIEMMATIRL 96
           ++ F +    D       + +   + +  + +              +       +    +
Sbjct: 195 KSTFSVNRGPDGNPKTVGYYLGTWRDRSIVCVWSNHLKNIPEKHNQVAQYYEVFLRQSPM 254

Query: 97  EPLL--------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA------- 141
           EP L        R  + + +  +     AI+T     L  +        ++         
Sbjct: 255 EPCLLFHEGGYWRELIVRTN--SRGHMMAIITFHPQELRQEELSVQKEAVKKFFTSGPGA 312

Query: 142 ---LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
              L +  +Q   +   +  +      + +  L      L  R   ++F Q N      +
Sbjct: 313 VCDLTSLYFQESTMMHCSHQQSPYQLLFGEPHLYEDLLGLKIRISPDAFFQINTAGAEVL 372

Query: 199 LEWVLAAT-KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              V   +       LL++ CG G   L LA++  +VL +E+ + +V+ AR   A N + 
Sbjct: 373 YRTVGELSGVNSNTILLDICCGTGVIGLSLAQYASQVLGIELVEQAVQNARXTAAFNGIT 432

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           N +     +++    + + +E            +F    V+P R+GL    V  ++    
Sbjct: 433 NCEFHAGRAEKILPQLLKSKE----------DGQFIVAVVNPARAGLHYQVVQAIRNCRA 482

Query: 318 I---LYISCNPDS-LCRDL-----------SILSTTHTIERLALFDQFPYTRHMECGVLL 362
           I   +++SC P     R++            +L     + +    D FP+T   E  +LL
Sbjct: 483 IRTLIFVSCKPHGETTRNIIELCCPPDSAKKLLGEPFVLRKAVSVDLFPHTLDCELVLLL 542

Query: 363 VR 364
            R
Sbjct: 543 AR 544


>gi|306822481|ref|ZP_07455859.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|309801408|ref|ZP_07695535.1| TRAM domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|304554026|gb|EFM41935.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|308221923|gb|EFO78208.1| TRAM domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 421

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 133/371 (35%), Gaps = 66/371 (17%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIF--------RSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           QL  K   + + ML      +++             +H+R R E     DG      M  
Sbjct: 95  QLKWKTCSIVEQMLRLGHTAVEVPIDRMPQDEAERGLHWRTRIEMIADADGRPS---MRR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           + T  R+ ID     S  +  L +     +           ++     +   A+      
Sbjct: 152 RGTHVRVPIDTMPLASRAL--LDVAEREHVWDGGFTPGSQIRLSVPEPRDGAAV------ 203

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
                   E    L D                  ++      + E++TVAGR   Y    
Sbjct: 204 -------EENYAVLVDG-----------------EVTAGTRALTEKVTVAGRDFEYGVDA 239

Query: 185 NSFTQPNAGINVHMLEWVLAATKG-----IQGDLLELYCGNGNFSLVLARHFD---RVLA 236
             F Q +    + +   V+   +G         + +LY G+G F+L LA       R+L+
Sbjct: 240 GGFWQMHRQAPIALTNHVINLVRGELNGAQSACVWDLYSGSGLFTLPLASLAAERTRMLS 299

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  K +V  A+ N+   H++NV +      +    +R +              R   + 
Sbjct: 300 VEGGKTAVRNAQRNLRHVHLDNVDVRAGDVAKTLVNVRNDL------------ARPDVVV 347

Query: 297 VDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           +DPPR+G      G +       ++YI+CNP SL RD + L+   + +  +  FD +P T
Sbjct: 348 LDPPRAGARAKVCGQIANSEARSVIYIACNPASLARDTATLAGLGYELADIHAFDIYPTT 407

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 408 HHVETVALFRK 418


>gi|325118195|emb|CBZ53746.1| Methyltransferase, related [Neospora caninum Liverpool]
          Length = 665

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 140/385 (36%), Gaps = 56/385 (14%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEP---IHYRMRA--EFH 50
           SG          Q   K   +R ++         VP   +  +      HYR +    + 
Sbjct: 289 SGCQYQHMPLSMQHEVKRGHVRGVLSRLAGLPESVPVNAVLSNNEGGGYHYRSKITPHYT 348

Query: 51  IWHDGDDLYHIMFDQQTKERM-RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
              +G        D ++  R+  I+        IN  ++E+   +  +         +  
Sbjct: 349 FHREGSIPSVGYNDVRSPRRVLEIESCKLALRSINEKLVEVRKQVAEQAQT------VTP 402

Query: 110 LTSQS---DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
            T++S      ++       +DD    C  R  D     +  + L+              
Sbjct: 403 GTTKSRRKGATLLLRDTATGIDDL--HCWYRAGDFFQVNRRVLPLLATLR---------- 450

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
                       I+     S  Q  A +   + +  ++    ++  LL+ YCG G F+L 
Sbjct: 451 -----------YIFDACSPSPLQV-AHVREQLRDLDVSTRPRLRRRLLDCYCGVGLFALA 498

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
               FD V+  +++  S+E A++N   N     +     +K F ++              
Sbjct: 499 CHDEFDEVVGFDVSPSSIELAKHNAQFNSKWRARFEVSDAKTFFESFGARHS-------- 550

Query: 287 IHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSILSTTHTIERL 344
             +     + +DPPR G D   +  +++  P  I+YISC+P +  RDL    + + ++ +
Sbjct: 551 -SASSRLFVVLDPPRKGCDAEFLQSLLKLKPERIVYISCHPATQARDLKAFLSLYAVKNV 609

Query: 345 ALFDQFPYTRHMECGVLLVRKPSGW 369
             FD FP++RH+EC + L R  S  
Sbjct: 610 QPFDMFPHSRHIECVITLERTASEQ 634


>gi|328724849|ref|XP_001948014.2| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog
           [Acyrthosiphon pisum]
          Length = 463

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 138/410 (33%), Gaps = 72/410 (17%)

Query: 9   QYEQQLAEKVD-----------RLRQMMLAFQVPNLQIFRSEPI--HYRMRAEFHIWH-- 53
            YE+QL  K             RL       ++P +    S P    YR + EF+     
Sbjct: 72  PYEKQLVLKQHWTNTVCKELRSRLHNAKTLIRLPKVFPISSSPQINKYRNKDEFNFRPGI 131

Query: 54  DGDDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR----------- 101
           DG+      F    TKE +   Y +    LIN            E  +R           
Sbjct: 132 DGNPKTLGFFVSNPTKENI---YCVSAMKLINMKQSHKDIAQVFEAFVRKSELPASYDHM 188

Query: 102 --AKLFQIDYLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI----- 152
                  I   ++      AIV        ++   +   +  D L +    +Q +     
Sbjct: 189 DGGFWRGIIVRSNLKGDKMAIVVANPRGYANEVMLDEQRKFNDYLKSININVQSLYFHPS 248

Query: 153 ----GRANKTKICLDRD-YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
                  + T I +D D Y+ E L     +  +R   +SF Q N      + + +     
Sbjct: 249 LHTRSSKDSTFILVDGDKYIYEDLC----SFKFRISPDSFFQINTLAAEVLYKELFKLIN 304

Query: 208 -GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
                 LL+L  G G  S++ ++H    + +E    +V  A+     N+++N   +    
Sbjct: 305 LTKTSTLLDLCSGTGTVSIIGSQHVQSCVGIESVAQAVNDAKETAKINNIHNCDFIEGKV 364

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISC 323
           +   + +  E                    ++P R+G+    +  ++    I    Y+SC
Sbjct: 365 EMVLKQVLDELSM----------TSDLCAVLNPGRAGVHPKVINAIRNNRLINTLAYVSC 414

Query: 324 N---PDSLCRDLSIL------STTHTIERLALFDQFPYTRHMECGVLLVR 364
               P ++ ++L  L      S   T+  +   D FP+T+H E   +  R
Sbjct: 415 KADSPITM-KNLVELVVNNKKSRPFTLNSIKPVDMFPHTKHCELIFMFKR 463


>gi|144574968|gb|AAZ43532.2| putative tRNA (Uracil-5-) -methyltransferase [Mycoplasma synoviae
           53]
          Length = 432

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 153/382 (40%), Gaps = 40/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56
           S  L+   Y+QQ+  K   L  + L        +F+      +  +YR +  + +  D D
Sbjct: 74  SAQLVNLNYDQQIKFKKSYLNFLFLRNFQLTQDVFQDFLTSAKQFNYRNKITYWMNKDFD 133

Query: 57  DLYHIMFD-QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF--QIDYLTSQ 113
           + ++     Q T +  +       S  I       +  I        KL   +I   +S+
Sbjct: 134 NRWNFCESIQNTNKFQKEKNSFLASKAIVDFKNSFLKFINSNSGFFDKLKPTKIMINSSR 193

Query: 114 SDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
             Q  V LI   L+  D W+    +L  +L                ++   + +V  R+ 
Sbjct: 194 DSQIFVILICDNLVKRDLWKFDFKKLFPSLTNLIINYNNTFF----EVYKGKTFVQ-RIG 248

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARHF 231
           V      +  + +SF Q N  +  ++ + +      +    L++ YCG G  ++ LA  F
Sbjct: 249 VN----KFNVLNDSFFQVNGPVAKYLFDDLAELISKVNSKSLIDFYCGVGAITIYLATKF 304

Query: 232 DRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
             +     E  + +++ A  N+  N +N  KI             +  +F+  K ++   
Sbjct: 305 PELDFYGYEKNRFAIKIANENVLINKLNPEKI-------------KFLKFDLDKKLNDKV 351

Query: 290 YRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTT--HTIERL 344
           ++  ++  DPPR+GL      +V   +   +I YISCNP +L RD+  ++      I+ +
Sbjct: 352 FQ-DSVIFDPPRAGLSQNLKLLVLNSENVKNIFYISCNPRTLVRDVKEITEKSNFKIKFI 410

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
             +D FP T H+E  V L R+ 
Sbjct: 411 KGYDMFPQTHHIETLVWLSREN 432


>gi|71894135|ref|YP_278243.1| putative tRNA (Uracil-5-) -methyltransferase [Mycoplasma synoviae
           53]
          Length = 433

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 153/382 (40%), Gaps = 40/382 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56
           S  L+   Y+QQ+  K   L  + L        +F+      +  +YR +  + +  D D
Sbjct: 75  SAQLVNLNYDQQIKFKKSYLNFLFLRNFQLTQDVFQDFLTSAKQFNYRNKITYWMNKDFD 134

Query: 57  DLYHIMFD-QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF--QIDYLTSQ 113
           + ++     Q T +  +       S  I       +  I        KL   +I   +S+
Sbjct: 135 NRWNFCESIQNTNKFQKEKNSFLASKAIVDFKNSFLKFINSNSGFFDKLKPTKIMINSSR 194

Query: 114 SDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
             Q  V LI   L+  D W+    +L  +L                ++   + +V  R+ 
Sbjct: 195 DSQIFVILICDNLVKRDLWKFDFKKLFPSLTNLIINYNNTFF----EVYKGKTFVQ-RIG 249

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARHF 231
           V      +  + +SF Q N  +  ++ + +      +    L++ YCG G  ++ LA  F
Sbjct: 250 VN----KFNVLNDSFFQVNGPVAKYLFDDLAELISKVNSKSLIDFYCGVGAITIYLATKF 305

Query: 232 DRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
             +     E  + +++ A  N+  N +N  KI             +  +F+  K ++   
Sbjct: 306 PELDFYGYEKNRFAIKIANENVLINKLNPEKI-------------KFLKFDLDKKLNDKV 352

Query: 290 YRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILSTT--HTIERL 344
           ++  ++  DPPR+GL      +V   +   +I YISCNP +L RD+  ++      I+ +
Sbjct: 353 FQ-DSVIFDPPRAGLSQNLKLLVLNSENVKNIFYISCNPRTLVRDVKEITEKSNFKIKFI 411

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
             +D FP T H+E  V L R+ 
Sbjct: 412 KGYDMFPQTHHIETLVWLSREN 433


>gi|171742570|ref|ZP_02918377.1| hypothetical protein BIFDEN_01683 [Bifidobacterium dentium ATCC
           27678]
 gi|283456344|ref|YP_003360908.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium dentium Bd1]
 gi|171278184|gb|EDT45845.1| hypothetical protein BIFDEN_01683 [Bifidobacterium dentium ATCC
           27678]
 gi|283102978|gb|ADB10084.1| tRNA (Uracil-5-) -methyltransferase [Bifidobacterium dentium Bd1]
          Length = 421

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 131/371 (35%), Gaps = 66/371 (17%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIF--------RSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           QL  K   + + ML      +++             +H+R R E     DG      M  
Sbjct: 95  QLKWKTCSIVEQMLRLGHTAVEVPIDRMPQDEAERGLHWRTRIEMIADADGRPS---MRR 151

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           + T  R+ ID     S  +  L +     +           ++     +   A+      
Sbjct: 152 RGTHVRVPIDTMPLASRAL--LDVAEREHVWDGGFTPGSQIRLSVPEPRDGAAV------ 203

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
                   E    L D                  ++      + E++TVAGR   Y    
Sbjct: 204 -------EENYAVLVDG-----------------EVTAGTRALTEKVTVAGRDFEYGVDA 239

Query: 185 NSFTQPNAGINVHMLEWVLAA-----TKGIQGDLLELYCGNGNFSLVLARHFD---RVLA 236
             F Q +    + +   V+              + +LY G+G F+L LA       R+L+
Sbjct: 240 GGFWQMHRQAPIALTNHVIDLVRRELNGAQSACVWDLYSGSGLFTLPLASLAAERTRMLS 299

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  K +V  A+ N+   H++NV +      +             L ++     R   + 
Sbjct: 300 VEGGKTAVRNAQRNLRHVHLDNVDVRAGDVAKT------------LGNVRNDLARPDVVV 347

Query: 297 VDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           +DPPR+G      G +       ++YI+CNP SL RD + L+   + +  +  FD +P T
Sbjct: 348 LDPPRAGARAKVCGQIADSEARSVIYIACNPASLARDTATLAGLGYELADIHAFDIYPTT 407

Query: 354 RHMECGVLLVR 364
            H+E   L  +
Sbjct: 408 HHVETVALFRK 418


>gi|227547632|ref|ZP_03977681.1| SAM-dependent methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227211887|gb|EEI79783.1| SAM-dependent methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 423

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 139/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +     P       +++R R E     
Sbjct: 85  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIERMPGDKAAGGLNWRTRIEM---I 141

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP              
Sbjct: 142 ADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEP-------------- 187

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                         +  +  E    + D   A      L+      ++      + E++T
Sbjct: 188 -----------GSQIRLSVPEPRGEIVDTAAADDNYAVLVDG----ELRAGSQLLTEQVT 232

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 233 INGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 292

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A ++N+V                      L  
Sbjct: 293 ATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLDH 340

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + +
Sbjct: 341 VPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYEL 400

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E   L  R
Sbjct: 401 KDIRAFDIYPMTHHVETVALFTR 423


>gi|257068619|ref|YP_003154874.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Brachybacterium faecium DSM 4810]
 gi|256559437|gb|ACU85284.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Brachybacterium faecium DSM 4810]
          Length = 440

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 129/373 (34%), Gaps = 55/373 (14%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI----FRSEP-----IHYRMRAEFHIWHDGDDLYHI 61
             Q     + +++++    V +  I        P     + +R R  + +  +G      
Sbjct: 107 PAQRRIASEVMQELLRRAGVTSFPIEQVQVEPAPHDVDGLAWRTRVRYAVDAEG---RIG 163

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M   ++ E   +      +  +  L +                  ID +   +  A V L
Sbjct: 164 MRGWRSHEVRPVGEDPLSAQAVRELRLGEWTAPEGTEA-------IDAVAPSTGPASVVL 216

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           I  R LD A  +      DA  A +        A  T +      V ER+        + 
Sbjct: 217 IG-RDLDPASVQIPESWGDADVAVR-------NARGTVMLRGEGTVHERVGERM----FT 264

Query: 182 QIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAV 237
                F Q +      + + V  A      G   +LY G G FS V A        V++V
Sbjct: 265 VSATGFWQSHRRAAELLSDVVRTALGVPEGGSAWDLYGGVGLFSAVAAEQVGPEGTVVSV 324

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E  + + + A  N+    +  V        ++  A R                   T+ +
Sbjct: 325 EGNRRASQLAAENLE--DLPQVSTATADVTDWVTARRG---------------GVDTVVL 367

Query: 298 DPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354
           DPPR+G     +G++       I+Y+SC P +L RDL+ +      +  L  FD FP+T 
Sbjct: 368 DPPRTGAGVELMGLLATAVRQRIVYVSCEPATLARDLAAIEKKGWRLADLRAFDLFPHTH 427

Query: 355 HMECGVLLVRKPS 367
           H+E   +L R  S
Sbjct: 428 HIESVAVLERATS 440


>gi|23465954|ref|NP_696557.1| hypothetical protein BL1394 [Bifidobacterium longum NCC2705]
 gi|50401592|sp|Q8G4I8|Y1394_BIFLO RecName: Full=Uncharacterized RNA methyltransferase BL1394
 gi|23326666|gb|AAN25193.1| conserved hypothetical protein with duf90 [Bifidobacterium longum
           NCC2705]
          Length = 435

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 139/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +     P       +++R R E     
Sbjct: 97  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIERMPGDKAAGGLNWRTRIEM---I 153

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP              
Sbjct: 154 ADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEP-------------- 199

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                         +  +  E    + D   A      L+      ++      + E++T
Sbjct: 200 -----------GSQIRLSVPEPRGEIVDTAAADDNYAVLVDG----ELRAGSQLLTEQVT 244

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 245 INGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 304

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A ++N+V                      L  
Sbjct: 305 ATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLDH 352

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + +
Sbjct: 353 VPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYEL 412

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E   L  R
Sbjct: 413 KDIRAFDIYPMTHHVETVALFTR 435


>gi|291516726|emb|CBK70342.1| 23S rRNA m(5)U-1939 methyltransferase [Bifidobacterium longum
           subsp. longum F8]
          Length = 423

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 139/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +     P       +++R R E     
Sbjct: 85  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIERMPGDKAAGGLNWRTRIEM---I 141

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP              
Sbjct: 142 ADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEP-------------- 187

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                         +  +  E    + D   A      L+      ++      + E++T
Sbjct: 188 -----------GSQIRLSVPEPRGEIVDTAAADDNYAVLVDG----ELRAGSQLLTEQVT 232

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 233 INGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 292

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A ++N+V                      L  
Sbjct: 293 ATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLDH 340

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + +
Sbjct: 341 VPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYEL 400

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E   L  R
Sbjct: 401 KDIRAFDIYPMTHHVETVALFTR 423


>gi|322691399|ref|YP_004220969.1| methyltransferase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456255|dbj|BAJ66877.1| putative methyltransferase [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 422

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 139/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +     P       +++R R E     
Sbjct: 84  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIERMPGDKAAGGLNWRTRIEM---I 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP              
Sbjct: 141 ADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEP-------------- 186

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                         +  +  E    + D   A      L+      ++      + E++T
Sbjct: 187 -----------GSQIRLSVPEPRGEIVDTAAADDNYAVLVDG----ELRAGSQLLTEQVT 231

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 232 INGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 291

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A ++N+V                      L  
Sbjct: 292 ATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLDH 339

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + +
Sbjct: 340 VPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYEL 399

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E   L  R
Sbjct: 400 KDIRAFDIYPMTHHVETVALFTR 422


>gi|229817410|ref|ZP_04447692.1| hypothetical protein BIFANG_02672 [Bifidobacterium angulatum DSM
           20098]
 gi|229785199|gb|EEP21313.1| hypothetical protein BIFANG_02672 [Bifidobacterium angulatum DSM
           20098]
          Length = 425

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 135/385 (35%), Gaps = 66/385 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP--------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +  S          +H+R R E  I  
Sbjct: 84  GADLVHVSLPGQLTWKAVTISEQMKRLGHVDVTVPISRADGDEELGGLHWRTRIEM-IAD 142

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGS---LLINALMIEMMATIRLEPLLRAKLFQIDYL 110
           D       M  + T  R+ +      +   L + A              +R  + +    
Sbjct: 143 DNGKPS--MRRRGTHVRVPLTTMPLATNALLDVAAANGIWDGGFEPGSQIRLSVPEPRQA 200

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER 170
             +SD + +   Y  L+D   +    +L                              ER
Sbjct: 201 VGESDHSDIGSNYAVLVDGELQAGTRQL-----------------------------TER 231

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-----IQGDLLELYCGNGNFSL 225
           +TVAGR   Y    N F Q +    + +   V+   +G     +   L +LY G+G F+L
Sbjct: 232 VTVAGREFSYMVDANGFWQVHRQAPIALANHVIDLVRGEMDGAVSAVLWDLYSGSGLFTL 291

Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            LA       R+ +VE    +V++ + N+ A  +N+V +                    L
Sbjct: 292 PLATMIAERTRMFSVEGGDAAVKSQQRNLRALGLNDVDVRCGDV------------SRTL 339

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-TH 339
             +  H      + +DPPR+G        +       I+YI+C+  SL RD + ++   +
Sbjct: 340 AHVPAHLAHPDVVVLDPPRAGAHAKVCRQIAEAGARSIVYIACDCTSLARDTATITGLGY 399

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +  +  +D +P T H+E   L  R
Sbjct: 400 ELADIHAYDIYPMTHHVETVALFRR 424


>gi|239621237|ref|ZP_04664268.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515698|gb|EEQ55565.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 422

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 139/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +     P       +++R R E     
Sbjct: 84  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIERMPGDKEAGGLNWRTRIEM---I 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP              
Sbjct: 141 ADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEP-------------- 186

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                         +  +  E    + D   A      L+      ++      + E++T
Sbjct: 187 -----------GSQIRLSVPEPRGEIVDTAAADDNYAVLVDG----ELRAGSQLLTEQVT 231

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 232 INGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 291

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A ++N+V                      L  
Sbjct: 292 ATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLDH 339

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + +
Sbjct: 340 VPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYEL 399

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E   L  R
Sbjct: 400 KDIRAFDIYPMTHHVETVALFTR 422


>gi|322689432|ref|YP_004209166.1| methyltransferase [Bifidobacterium longum subsp. infantis 157F]
 gi|320460768|dbj|BAJ71388.1| putative methyltransferase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 422

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 139/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +     P       +++R R E     
Sbjct: 84  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIERMPGDKEAGGLNWRTRIEM---I 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP              
Sbjct: 141 ADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEP-------------- 186

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                         +  +  E    + D   A      L+      ++      + E++T
Sbjct: 187 -----------GSQIRLSVPEPRGEIVDTAAADDNYAVLVDG----ELRAGSQLLTEQVT 231

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 232 INGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 291

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A ++N+V                      L  
Sbjct: 292 ATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLDH 339

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + +
Sbjct: 340 VPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYEL 399

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E   L  R
Sbjct: 400 KDIRAFDIYPMTHHVETVALFTR 422


>gi|190569470|ref|ZP_03022333.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
 gi|190559418|gb|EDV13440.1| RNA methyltransferase, TrmA family [Bacillus anthracis
           Tsiankovskii-I]
          Length = 134

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 14/146 (9%)

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
              L LA     V  +++   ++  AR N   +   N K     ++++     +E     
Sbjct: 1   TIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE----- 55

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTH 339
                   +R   I VDPPR+G DD  +  +       ++Y+SCNP SL RD+  L  ++
Sbjct: 56  -------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALMKSY 108

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E +   D FP+T H+E  V LVRK
Sbjct: 109 EVEYVQPVDMFPHTAHVENVVKLVRK 134


>gi|171689586|ref|XP_001909733.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944755|emb|CAP70866.1| unnamed protein product [Podospora anserina S mat+]
          Length = 618

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 135/416 (32%), Gaps = 86/416 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS------EPIHYRMRAEFHIWHDG 55
                +  Y +QL  K + + +    F     ++          P+ Y  R +     DG
Sbjct: 232 GCQFQMLDYAEQLRIKRETVVKAYKNFSQLTPELVPEILDTIGSPLQYNYRTKLTPHFDG 291

Query: 56  -------DDLYH-------IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
                      H           +  ++ M I+     +  +   +      ++ E    
Sbjct: 292 PWNNPRRGPKKHLESCPPIGFTPKSARKVMDIEDCPIATPAVRKGLTAERERMKTE---- 347

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
                    +  S+ A + L  + +   A  E    +     +    ++  G  +     
Sbjct: 348 --------FSKYSNGATILLRENTIRVPAGGEAPSDI----PSDAVVVRTPGYTDYKTHI 395

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLEL 216
            D +      T      I+     SF Q N  I     +++               L++ 
Sbjct: 396 TDNNA---TSTEHVDDFIFTNPAGSFFQNNNSILSPFTQYIRDHILPPANKEGIKYLIDA 452

Query: 217 YCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAM 273
           Y G+G F++  +  F    + ++IA+ S+  AR N   N+++    K +   + E  ++ 
Sbjct: 453 YSGSGLFTITQSALFPGGSIGIDIAEGSIAYARKNAKLNNLDEGQCKFIAADAPELFKS- 511

Query: 274 RREREFNRLKDIDIHSYRFK--TIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLC 329
                        +  Y      + +DPPR G D + +  +       ++Y+SCN  +  
Sbjct: 512 -------------VEGYNPDETVVVLDPPRKGCDASFLSQLLRFGPRRVVYVSCNVHTQA 558

Query: 330 RDLSILSTT---------------------HTIERLALFDQFPYTRHMECGVLLVR 364
           RD+ +L                        + IE L  FD FP T H+E   +L R
Sbjct: 559 RDVGVLVRGEVEGVVDDTEETDGTERKKTRYEIESLRGFDFFPQTAHVEGVAVLNR 614


>gi|227821072|ref|YP_002825042.1| RNA methyltransferase [Sinorhizobium fredii NGR234]
 gi|227340071|gb|ACP24289.1| RNA methyltransferase [Sinorhizobium fredii NGR234]
          Length = 415

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 132/358 (36%), Gaps = 40/358 (11%)

Query: 15  AEKVDRLRQMML----AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           A K + +   +       +V  L I R      R RA F       +L       Q+   
Sbjct: 90  AFKRNLVIDALKSKGLKPEVAPLIIARPGE---RRRAVFTARRTEKELLLGFNQAQSHHI 146

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + +      S  I + +  +   I       A+ F+I  L + S            LD A
Sbjct: 147 VAVGECPITSPGIVSRLPTIRK-IAAAMASGAEPFRITVLETDSG-----------LDLA 194

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--VAGRTLIYRQIENSFT 188
           + +  +  R      +  +   G A    + L+ + + E +   +    +       +FT
Sbjct: 195 FEDIKLSDRQRRSTVEAVLGERGIAR---VSLNGEIIIEPVKPLIDFDGVSVSPPPGAFT 251

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q        M + VL    G    + +L+ G G F+L +AR   RV AVE    +++A  
Sbjct: 252 QATRPAEEAMAKLVLG-HIGKAKRVADLFAGIGTFALRIARTA-RVHAVEGEDKALKA-- 307

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                     +     +++        +R+  R   +      F  +  DPPR+G +   
Sbjct: 308 ----------LDFAARNTQGLKPVTVEKRDLFRRPMMAQELKVFDAVVFDPPRAGAEAQC 357

Query: 309 VGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             + +     I  +SCNP +L RDLSIL +  + I  +   DQF ++ H+E    L +
Sbjct: 358 HELARSGVKKIAAVSCNPVTLARDLSILVAAGYRIRSVTPIDQFLWSAHVEAVATLEK 415


>gi|312132559|ref|YP_003999898.1| trma [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773496|gb|ADQ02984.1| TrmA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 422

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 139/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +     P       +++R R E     
Sbjct: 84  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIERMPGDREAGGLNWRTRIEM---I 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP              
Sbjct: 141 ADDNGIPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEP-------------- 186

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                         +  +  E    + D   A      L+      ++      + E++T
Sbjct: 187 -----------GSQIRLSVPEPRGEIVDTAAADDNYAVLVDG----ELRAGSQLLTEQVT 231

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 232 INGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 291

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A ++N+V                      L  
Sbjct: 292 ATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLDH 339

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + +
Sbjct: 340 VPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYEL 399

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E   L  R
Sbjct: 400 KDIRAFDIYPMTHHVETVALFTR 422


>gi|295394774|ref|ZP_06804989.1| TrmA family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294972370|gb|EFG48230.1| TrmA family RNA methyltransferase [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 417

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 125/358 (34%), Gaps = 55/358 (15%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
               + + Q+   F      +   E    R R +  +          M+   + + + + 
Sbjct: 106 KFDRELMDQLEREF-RVTPPVNDGEEW--RTRVQLAV----AGGRVGMYRAGSHDIVPVT 158

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL----IYHRLLDDA 130
           +       IN L +  +     E        +++    ++  A+  +    I HRL +  
Sbjct: 159 HVPLAVPAINDLNLHQVDLTGAE--------RVEIAVGEAGGAVTVVGGEEIAHRLAEVV 210

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
               ++  R A    +        A              R++   R + +      F Q 
Sbjct: 211 PEGWSLMSRAAGRRNRSSAATTLLA-----------GPGRVSHTVRGVTFDLDAEGFWQV 259

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARY 249
           +      +   V+     ++GD+ +L+CG G  ++++AR    RV  VE +  ++E+AR 
Sbjct: 260 HPDAADILSRGVVER---VRGDVADLFCGAGLLAVMVARETGARVWGVEGSALAIESARS 316

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N     V+         ++                         T+ VDPPR+GLD A +
Sbjct: 317 NAKRAGVD-ATFDVGRVEKLD-----------------ALTGADTVVVDPPRAGLDPAVI 358

Query: 310 GMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            ++ +     ++Y+SC+  +  RD   L         +  FD FP T H+E      R
Sbjct: 359 RLIASSTCGRVVYVSCDGATFSRDAQRLQNSGFQCRDIQAFDLFPLTAHVEFIGTFDR 416


>gi|37588964|gb|AAH08067.2| TRMT2B protein [Homo sapiens]
          Length = 289

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 32/223 (14%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
           ++     Y+ E L     +L  R   ++F Q N      ML   +    G+  D  LL++
Sbjct: 82  QLLFGEPYIFEELL----SLKIRISPDAFFQINTAGAE-MLYRTVGELTGVNSDTILLDI 136

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
            CG G   L LA+H  RVL +E+ + +VE AR+  A N + N +     +++    + + 
Sbjct: 137 CCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKS 196

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISC--------NP 325
           +E            +     V+P R+GL    +  ++ +  I   +++SC        N 
Sbjct: 197 KE----------DGQSIVAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNV 246

Query: 326 DSLCRDL----SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             LC        +L     +++    D FP+T H E  +L  R
Sbjct: 247 IELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCELVLLFTR 289


>gi|256070796|ref|XP_002571728.1| rna m5u methyltransferase [Schistosoma mansoni]
 gi|238656875|emb|CAZ27958.1| rna m5u methyltransferase, putative [Schistosoma mansoni]
          Length = 607

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/400 (19%), Positives = 139/400 (34%), Gaps = 79/400 (19%)

Query: 33  LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER---MRIDYF-------MPGSLL 82
             I       YR ++E  + +D D    ++  + +K +   + +  F          + +
Sbjct: 220 PIIPSPIQTEYRNKSELTVGYDMDGSGPVIGFRYSKYKGGSVAVGSFKSWNFMPRNSNKV 279

Query: 83  INALMIEMMATIRLE----PLL--------RAKLFQIDYLTSQSDQAIVTLIYHR----- 125
           INAL   + A  + E    P+L              +    S+S   +V L  +      
Sbjct: 280 INALQNFLTACFKGEFEQLPMLDAFDPITYNGNWRHVLIRESRSGDTLVVLYINTYGFTE 339

Query: 126 ----LLDDAWRECAIR-------LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
                L D  R            L     +   +  +       +    + Y+ E+    
Sbjct: 340 ENINNLLDELRTWFQTGPGSDSGLTSLYLSICSRSGIKQSDEDLRQVFGKPYIIEQ---- 395

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---------------LLELYCG 219
              L +    ++F Q N      + E +         +               LL++ CG
Sbjct: 396 CCGLNFHISISAFFQVNTLAAELLFERISCLCNLPSENEITCANKNPNEKKRILLDVCCG 455

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G  +L L++HFDRV+ +++   ++E A+ N   N + NV+     ++            
Sbjct: 456 TGTIALCLSKHFDRVIGIDMCNSAIEDAKSNAKLNDIQNVEFFAGKAENML--------- 506

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPD-------SLC 329
            R     +  Y   ++ VDPPR+GL  + + +++       I+YISCN +       +  
Sbjct: 507 -RNTIDSLPEYCDLSVIVDPPRAGLHHSVIQLLRNCKQIQRIIYISCNIEYAIENFLNFA 565

Query: 330 RDL--SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           R                   D FP TRH E  +LL R PS
Sbjct: 566 RPCSKKFTGIPFVPTMAEAVDLFPQTRHTEVILLLERIPS 605


>gi|222147749|ref|YP_002548706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium vitis
           S4]
 gi|221734737|gb|ACM35700.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Agrobacterium vitis
           S4]
          Length = 418

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 140/359 (38%), Gaps = 40/359 (11%)

Query: 15  AEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
             K   L   + +  +     P ++ F  E    R R  F        L        ++ 
Sbjct: 90  EFKRSTLIAALKSKGIETEVNPLVEAFPGE----RRRLVFTARKREKGLLIGFNQAASRH 145

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            + ++     S  I A + ++ A                  T+      +  +   L D 
Sbjct: 146 IVELEECPVTSAGILARLDDLRAIGAAIATGSDHFRMTVTETTTGLDVSLDGVRGGLPD- 204

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL--TVAGRTLIYRQIENSF 187
                  R R A+     +++ +      ++ ++ + V E     +     +      +F
Sbjct: 205 -------RERRAITEVVLKMRGVA-----RVSVNGEIVIEPHKPMLDFGGALVAMPPGTF 252

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           TQ        M   VL    G    + +L+CG G F+L LAR   +VLAVE  + +V+A 
Sbjct: 253 TQATRQAEEAMTALVLD-HVGKAKRVADLFCGIGTFTLRLARQA-QVLAVESDEKAVKA- 309

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             ++AA +   +K ++   ++     RR    + LK +D        +  DPPR+G ++ 
Sbjct: 310 -LDLAARNTKGLKPIKAEKRDL---FRRPLMVSELKGLDA-------VVFDPPRAGAEEQ 358

Query: 308 TVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
              + ++    I+ +SCN  +L RDLSIL +  + I  +   DQF ++ H+E  V L +
Sbjct: 359 CAELARSQVKTIVAVSCNALTLARDLSILMAGGYRITAVTPIDQFLWSPHVEVVVALTK 417


>gi|296129556|ref|YP_003636806.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas flavigena
           DSM 20109]
 gi|296021371|gb|ADG74607.1| deoxyribonuclease/rho motif-related TRAM [Cellulomonas flavigena
           DSM 20109]
          Length = 420

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 139/369 (37%), Gaps = 60/369 (16%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-QIFRSEP-------IHYRMRAEFHIWHDGDDLYHIM 62
             Q A K   L + +      +L     + P       + +R R + H+  +G      M
Sbjct: 97  PAQRAWKEAVLAEQLRRLARLDLTPTVEAAPGDDARGGLAWRTRIDLHVDAEG---RAGM 153

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
              ++ + + +D     +  + AL +                 +I+ +      + + L+
Sbjct: 154 RAHRSHDVVALDDMPLATEHVAALRLFERRWPAGS--------RIEAVAPADGSSPIVLL 205

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                D             LHA +   +   RA           V ER++VAG   +YR 
Sbjct: 206 DGAPFD-------------LHAHRPDRRPNARA----------AVRERVSVAGVEHVYRV 242

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVLAVE 238
               F Q +      +   VL A   + G  +L+LY G G FS  LA       R++AVE
Sbjct: 243 AAAGFWQVHREAPALLASRVLEAVGDVAGATVLDLYSGAGLFSSPLADAVGTDGRLVAVE 302

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
             + +V  AR N      ++   V + + +    +   R           +     + +D
Sbjct: 303 GDERAVRDARRNA-----HDRPQVELHAGDVADVLTGRR------GAVAPAAAADVVVLD 351

Query: 299 PPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRH 355
           PPR+G     V  V A     ++Y++C+P +L RD+++L+    +   +   D FP T H
Sbjct: 352 PPRTGAGRRVVEAVAALRPARVVYVACDPAALARDIALLAERGWSDVTVTGLDLFPMTHH 411

Query: 356 MECGVLLVR 364
           +E   +L R
Sbjct: 412 VEAVAVLTR 420


>gi|225351373|ref|ZP_03742396.1| hypothetical protein BIFPSEUDO_02967 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157717|gb|EEG71000.1| hypothetical protein BIFPSEUDO_02967 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 421

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 133/372 (35%), Gaps = 68/372 (18%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIF---RSEP-----IHYRMRAEFHIWHDGDDLYHIMFD 64
           QL  KV  + + M      ++++     SE      +H+R R E     DG      M  
Sbjct: 95  QLKWKVTSVAEQMARLGHVDVEVPIERMSEDDAERGLHWRTRIEMIADADGRPS---MHR 151

Query: 65  QQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           + T  R+ ID     S  L+     E +     EP             SQ   ++     
Sbjct: 152 RGTHVRVPIDTMPLASRTLLEVAEREHVWEGSFEPG------------SQIRLSVPEPRD 199

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           +  + D +                           ++      + E++ VAGR   Y   
Sbjct: 200 NAPISDNYAVLVN---------------------GEVVAGSRELTEKVIVAGREFEYNVD 238

Query: 184 ENSFTQPNAGINVHMLEWVLAATKG-----IQGDLLELYCGNGNFSLVLARHFD---RVL 235
              F Q +    + +   V+   +G         L +LY G+G F+L LA       R+L
Sbjct: 239 AGGFWQMHRHAPIALTNHVIDLVRGELDGAKSACLWDLYSGSGLFTLPLATLTAERTRML 298

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           +VE  K +V  A+ N+   H+ NV        +    +R +              +   +
Sbjct: 299 SVEGGKTAVRNAQRNLRHIHLGNVDARVGDVAKTLANVRNDL------------AKPDVV 346

Query: 296 FVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
            +DPPR+G        +       ++YI+C+P SL RD + L    + +  +  FD +P 
Sbjct: 347 VLDPPRAGARAKVCRQIAEAEAKSVVYIACDPASLARDTATLVLLGYELADIRAFDIYPM 406

Query: 353 TRHMECGVLLVR 364
           T H+E   L  +
Sbjct: 407 THHVETVALFRK 418


>gi|239917806|ref|YP_002957364.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Micrococcus luteus NCTC 2665]
 gi|281413702|ref|ZP_06245444.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Micrococcus luteus NCTC 2665]
 gi|239839013|gb|ACS30810.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Micrococcus luteus NCTC 2665]
          Length = 490

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 142/376 (37%), Gaps = 36/376 (9%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRAEFHIWHDGDDLYHIMFD 64
           Q   K    R  +       ++          EP    +R R  F +   G   +  M  
Sbjct: 112 QRRLKAQVFRDTVHRIADLAVEPGVCFAGSEDEPTGQRWRTRNAFAVTPQG---HIAMHA 168

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            ++   + +     G   ++AL    +         R  +      +      +VT    
Sbjct: 169 YRSATLLPVRNMPLGVPALDALA---LWDWDFTGAARVDVAT--PASGSRPLVLVTPTPQ 223

Query: 125 RLLDDAW-RECAIRLRDALHARKYQIQ--LIGRANKT------KICLDRDYVDERL-TVA 174
             +D+        R+R A +A    +   L     K       +    + +V+E + +  
Sbjct: 224 TRVDEVKLGRLRTRIRQAANACGVDVSTGLALPGPKQFLPVKVERITGKTWVEETVESER 283

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD- 232
           G T  +R   + F Q +      +++ VL   +   G ++ +LY G G FS  LA     
Sbjct: 284 GGTKRFRVTGDGFWQVHQHAPATLVDAVLEDARVEPGQVVADLYGGAGLFSAYLADAVGP 343

Query: 233 --RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             RV +VE ++ + + AR N+  +      ++   + +   +  +  E   + D  +   
Sbjct: 344 EGRVYSVEASRRASKDARRNL--HEQPQASVLNGPTDKVLGSWLKYPERP-VADGGLGGA 400

Query: 291 RFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
              T+ +DPPR+G     +  + A     I+Y+SC+P S  RDL+ L    + +ER  + 
Sbjct: 401 ALDTVVLDPPRAGAGRRAIERILALEPGRIVYVSCDPASFARDLAWLRDGGYEVERARVV 460

Query: 348 DQFPYTRHMECGVLLV 363
           D +P T H+E    LV
Sbjct: 461 DLYPDTHHLESVTALV 476


>gi|296454344|ref|YP_003661487.1| (uracil-5)-methyltransferase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183775|gb|ADH00657.1| (Uracil-5)-methyltransferase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 422

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 138/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ I     P       +++R R E     
Sbjct: 84  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAIPIERMPGDKAAGGLNWRTRIEM---I 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP              
Sbjct: 141 ADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEP-------------- 186

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                         +  +  E    + D   A      L+      ++      + E++T
Sbjct: 187 -----------GSQIRLSVPEPRGEIVDTAAADDNYAVLVDG----ELRAGSQLLTEQVT 231

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 232 INGTTFDYQVDANGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 291

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A  +N+V                      L  
Sbjct: 292 ATMTGERTRMLSVEGARVAVKNAQRNLRAMDLNDVDARAGDV------------SRTLDH 339

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD + L    + +
Sbjct: 340 VPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTATLIGEGYEL 399

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E   L  R
Sbjct: 400 KDIRAFDIYPMTHHVETVALFTR 422


>gi|302525757|ref|ZP_07278099.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. AA4]
 gi|302434652|gb|EFL06468.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptomyces sp. AA4]
          Length = 396

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 123/367 (33%), Gaps = 78/367 (21%)

Query: 10  YEQQLAEKV--DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           Y+++L   V  ++L+++    +   ++     P+ +R R       DG      +    +
Sbjct: 95  YQRELKAAVVAEQLQRLAGITRDVVVEPLEGGPLGWRSRVRLVAGRDGQ---AGLRAHHS 151

Query: 68  KERMRIDYFMPGSL--LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
              + ID         L  AL         LE            +TS  D  +       
Sbjct: 152 HRVIPIDDCPIAVPGSLGTALGKRWRPGTELE------------VTSDGDNHL------- 192

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERLTVAGRTLIYRQI 183
                           L   + + Q    +     +    RD+              R  
Sbjct: 193 ------------HLRELATVRGRTQGKQLSGGMAIQHAAGRDW--------------RLD 226

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD---RVLAVEI 239
            + F Q +      + E V        G +  +LY G G F+ VLA       +VLA+E 
Sbjct: 227 AHGFWQVHPRAADTLAELVREWADAPSGGVAWDLYAGVGLFASVLADQVGPDGQVLAIES 286

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            + +V     N+A               +  Q   R      L  I         + +DP
Sbjct: 287 GRRAVSDGERNLA---------------DLPQVNWRSGRVEHL--IGDAPTPVDVVVLDP 329

Query: 300 PRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356
           PR G   A V  + A     I+Y++C+P +L RD+   S   +++  L  FD FP T H+
Sbjct: 330 PRKGAGRAVVDAIAAGEPDRIVYVACDPAALARDVQFFSEHGYSLTDLRAFDAFPMTHHV 389

Query: 357 ECGVLLV 363
           EC  LL 
Sbjct: 390 ECVALLQ 396


>gi|163742640|ref|ZP_02150026.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Phaeobacter
           gallaeciensis 2.10]
 gi|161384225|gb|EDQ08608.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Phaeobacter
           gallaeciensis 2.10]
          Length = 415

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 121/357 (33%), Gaps = 38/357 (10%)

Query: 16  EKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K+D +R  + A  +      I  S P   R RA   +             + +     I
Sbjct: 85  WKIDIVRNALAAQGLETEFRPIHTSPPQS-RRRATLSVRRTKKGAMAGFHGRASGVITEI 143

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLL-----RAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
                       L  E+++ I +   L       K      +T       V +   + LD
Sbjct: 144 PDC-------QLLAPELLSAIPMAEALAMVGASRKAPLSVTVTLSEVGVDVLVTNGKPLD 196

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
              R    ++ DA H  +   +      +      + +    +              +F 
Sbjct: 197 GPLRIALAQVVDAHHIARLTWEDELIGMEQ--APTQPFGPAHVCP---------PPGAFL 245

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q        +L  V     G +  +++L+ G G F+L LA++   V AVE     + A  
Sbjct: 246 QATRDGEAALLAAVKDCVVGAK-RIVDLFAGCGTFTLPLAKNA-EVHAVEGESSMLRA-- 301

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            +        +K V   +++  +      + N           F    +DPPR+G +   
Sbjct: 302 LDAGWRQAKGLKKVTTETRDLFRNPLLAEDLNPF------GAAFDVAVIDPPRAGAEAQV 355

Query: 309 VGMVQAY-PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
             +V A    + Y+SCNP +  RD  IL+   + ++ + + DQF ++ H E      
Sbjct: 356 TQLVTARTKRVAYVSCNPVTFARDAKILTDGGYRLDWVQVVDQFRWSSHCELAASFS 412


>gi|47459337|ref|YP_016199.1| SAM-dependent methyltransferase [Mycoplasma mobile 163K]
 gi|51316610|sp|Q6KHE2|Y5020_MYCMO RecName: Full=Uncharacterized RNA methyltransferase MMOB5020
 gi|47458667|gb|AAT27988.1| SAM-dependent methyltransferases [Mycoplasma mobile 163K]
          Length = 363

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 121/304 (39%), Gaps = 40/304 (13%)

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
            KER+  D+       I    I  +  ++ + LL  +    + +T       +    H++
Sbjct: 90  KKERVINDF-----KKIANYEISSLELVQGKKLLHYR----NKITLHYGSLYLANSNHKI 140

Query: 127 LDDAWRECAIRLRDALHARKYQIQ----LIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                    I L+      ++ I+     I    +TKI           T     + +R 
Sbjct: 141 KLAKSLLTDINLKANKKEAEWIIRKLDTQIEGTKQTKIYT---------TDKMNGITFRV 191

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             NSF Q N  +  +++   ++    +  ++L+LY G G  SL++A     V  VE    
Sbjct: 192 GLNSFYQVNKEVA-NLIYNQISEFINLNENVLDLYSGIGTISLLIAAKAKSVTGVERNLD 250

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           S+E A +N   N + NV  +     ++ +  +                 F T+ VDP R 
Sbjct: 251 SIEDANFNKEFNKIKNVNFIHQDVIKYLKQNK---------------TYFDTVIVDPARR 295

Query: 303 GLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGV 360
           GL++  + ++       I+Y+SCN  +   + +     + IE +  +D FP T H+E  +
Sbjct: 296 GLEEDIIELILKLKPQKIIYLSCNVGTQASNFNKFKHEYQIEFIKSYDMFPQTYHIESLM 355

Query: 361 LLVR 364
           +L +
Sbjct: 356 VLKK 359


>gi|306818479|ref|ZP_07452202.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris
           ATCC 35239]
 gi|304648652|gb|EFM45954.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus mulieris
           ATCC 35239]
          Length = 418

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 147/423 (34%), Gaps = 68/423 (16%)

Query: 6   LIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           +   Y  Q+ +K+   R+ +  F  P+ +    F+     +R +A+  I      +   +
Sbjct: 1   MGQDYRDQVRDKMRTTRRTLYPFLTPDTKWNSPFQCPQPGFRNKAKMVISGSKKTITLGL 60

Query: 63  FDQQTK-ERMRIDYFM-------PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
                    + ++               I   ++ + A        R +L  +    + +
Sbjct: 61  APTPRHPHGVDLEKCPLYPESIRATFEPIRQWLLRLGARPYQIDAHRGELRHVLVSANPA 120

Query: 115 DQAIVTLIYH-----RLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDY 166
            + +V L+       + +++ W + A  L   L      IQ    A      +I L    
Sbjct: 121 GELMVRLVLRSKAALKRVENTWPDLARELPG-LRVFSVNIQPEHTALIDGPEEIVLSP-- 177

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSL 225
               L + G          +F Q N    + +          +  G + +LYCG G F  
Sbjct: 178 -QRFLPMPGVGTDLFLAPGAFFQTNTAGALALYNQAAEWAARLRPGLVWDLYCGVGGFGF 236

Query: 226 VLARHFD----------------RVLAVEIAKPSVEAARYNIAAN--------HVNNVKI 261
            +A                    +V+ VE+A  ++E A++             H N    
Sbjct: 237 AVADSLGANPSPGEAGGGEPGSCQVIGVELAGAAIEGAKHAAQLQRATPGQAPHENQTTQ 296

Query: 262 VRMSSKE-------FTQAMRREREFNRLKDIDIHSYR----------FKTIFVDPPRSGL 304
           V   +          T  +  +   N L+ I   + +             + V+PPR GL
Sbjct: 297 VTGDTTGSNTTDDITTNQVISKPAANGLRFITADAGKWIKNQKKLVTPDLLVVNPPRRGL 356

Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            +     ++    PH++Y SC   SL  +L  + + + I  L L D FP+TRH+E  VLL
Sbjct: 357 GNELSKWIEKSEIPHVIYSSCYQPSLVDNLHRMKS-YRITELKLVDMFPHTRHVETIVLL 415

Query: 363 VRK 365
            RK
Sbjct: 416 SRK 418


>gi|213691821|ref|YP_002322407.1| (Uracil-5)-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523282|gb|ACJ52029.1| (Uracil-5)-methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457915|dbj|BAJ68536.1| putative methyltransferase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 422

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 140/383 (36%), Gaps = 64/383 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP-------IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +     P       +++R R E     
Sbjct: 84  GADLVHVSLPGQLKWKAITVSEQMSRLGHIDVAVPIERMPGDKEAGGLNWRTRIEM---I 140

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             D+    M  + T  R+ ID     +  L++    E +     EP              
Sbjct: 141 ADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEP-------------- 186

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                         +  +  E    + D   A      L+      ++      + E++T
Sbjct: 187 -----------GSQIRLSVPEPRGEIVDTAAADDNYAVLVDG----ELRAGSQLLTEQVT 231

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVL 227
           + G T  Y+   N F Q +    + +   V+    G         + +LY G+G F+L L
Sbjct: 232 INGTTFDYQVDVNGFWQVHRQAPIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPL 291

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE A+ +V+ A+ N+ A ++N+V                      L  
Sbjct: 292 ATMTGERTRMLSVEGARVAVKNAQRNLRAMNLNDVDARAGDV------------SRTLDH 339

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTI 341
           +  H  +   + +DPPR+G        + A     ++YI+C+P SL RD +IL    + +
Sbjct: 340 VPAHLAKPNVVVLDPPRAGARAKVCRQIAAAGASSVVYIACDPTSLARDTAILIGEGYEL 399

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           + +  FD +P T H+E   L  R
Sbjct: 400 KDIRAFDIYPMTHHVETVALFTR 422


>gi|163737964|ref|ZP_02145380.1| (Uracil-5)-methyltransferase [Phaeobacter gallaeciensis BS107]
 gi|161388580|gb|EDQ12933.1| (Uracil-5)-methyltransferase [Phaeobacter gallaeciensis BS107]
          Length = 415

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 121/357 (33%), Gaps = 38/357 (10%)

Query: 16  EKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K+D +R  + A  +      I  S P   R RA   +             + +     I
Sbjct: 85  WKIDIVRNALAAQGLETEFRPIHTSPPQS-RRRATLSVRRTKKGAMAGFHGRASGVITEI 143

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLL-----RAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
                       L  ++++ I +   L       K      +T       V +   + LD
Sbjct: 144 PDC-------QLLAPQLLSAIPMAEALAMVGASRKAPLSVTVTLSEVGVDVLVTNGKPLD 196

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
              R    ++ DA H  +   +      +      + +    +              +F 
Sbjct: 197 GPLRIALAQVVDAHHIARLTWEDELIGMEQ--APTQPFGPAHVCP---------PPGAFL 245

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q        +L  V     G +  +++L+ G G F+L LA++   V AVE     + A  
Sbjct: 246 QATRDGEAALLAAVKDCVVGAK-RIVDLFAGCGTFTLPLAKNA-EVHAVEGESSMLRA-- 301

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            +        +K V   +++  +      + N           F    +DPPR+G +   
Sbjct: 302 LDAGWRQAKGLKKVTTETRDLFRNPLLAEDLNPF------GAAFDVAVIDPPRAGAEAQV 355

Query: 309 VGMVQAY-PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
             +V A    + Y+SCNP +  RD  IL+   + ++ + + DQF ++ H E      
Sbjct: 356 TQLVTARTKRVAYVSCNPVTFARDAKILTDGGYRLDWVQVVDQFRWSSHCELAASFS 412


>gi|315579657|gb|EFU91848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
           TX0630]
          Length = 385

 Score =  162 bits (410), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 92/264 (34%), Gaps = 27/264 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L+Q +  F+  N Q       I    P +YR +A+F +   
Sbjct: 84  GCQLQHLAYKAQLDFKKDLLKQALNKFKPANYQNYELRKTIGMDNPWNYRNKAQFQLRQI 143

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAK 103
              +   ++   + + + ID  +               L+N   + +    +   + R  
Sbjct: 144 DGQVEAGLYQADSHQLVPIDNCLVQQPATTKVMNTLVDLLNDFQLPIYDERKNSGIFRTL 203

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + ++     Q+ +  V  I          +    + + L      +Q +    KT + + 
Sbjct: 204 MVRVGI---QTGEVQVVFITQSQKFPQKEKMVRAINEQLPEVVSIMQNVQN-KKTSLVMG 259

Query: 164 RD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYC 218
            D    +  E +      +++     +F Q N      +  E + A        +++ YC
Sbjct: 260 DDTLHLWGKESIEEHINDVVFDLSPRAFFQLNPEQTEVLYNEGIKALDLQPNETVVDAYC 319

Query: 219 GNGNFSLVLARHFDRVLAVEIAKP 242
           G G   L LA+   +V  ++   P
Sbjct: 320 GVGTIGLSLAKQAHQVRGMDTISP 343


>gi|116250743|ref|YP_766581.1| 23S rRNA (uracil-5-)-methyltransferase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115255391|emb|CAK06466.1| putative 23S rRNA (uracil-5-)-methyltransferase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 416

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 83/355 (23%), Positives = 137/355 (38%), Gaps = 33/355 (9%)

Query: 15  AEKVDRLRQMML-AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           A K   +   +      P +          R R  F       D+       ++   + I
Sbjct: 90  AFKRQLVIDALKSKGLTPEVGAIVPARPGERRRVVFAARKTEKDMLVGFNQAESHHIVAI 149

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +     S  I A +  + A I       A+ F+I  L + S   I      +L D   R+
Sbjct: 150 EECPISSAGIIARLPAIRA-IAASLATSAEPFRIAVLETLSGLDISVDDVKKLSDPQRRK 208

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLTVAGRTLIYRQIENSFTQPN 191
                     A +  + L G A    + L+ + + E  +  V    +        FTQ  
Sbjct: 209 ----------AIETALSLRGIAR---VSLNGEILVEPSKPMVEFGGVQVSPPPGGFTQAT 255

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 M E V+A   G    + +L+ G+G FSL LAR   RV AVE    ++ A  +  
Sbjct: 256 KPAEEAMAELVMA-HAGKAKRIADLFAGSGTFSLRLAR-IGRVHAVEAEAKALAALDH-- 311

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           AA +   +K V +  ++  +     +EF            +  +  DPPR+G +     +
Sbjct: 312 AARNTQGLKPVTVEKRDLFRRPLMTQEFK----------PYDAVVFDPPRAGAEFQCQEL 361

Query: 312 VQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            + A   I+ +SCNP +L RDL+IL    + I ++   DQF +T H+E    L +
Sbjct: 362 ARSAVKKIVAVSCNPLTLARDLAILVEGGYRITQVTPIDQFLWTSHVEVVATLEK 416


>gi|330837297|ref|YP_004411938.1| (Uracil-5)-methyltransferase [Spirochaeta coccoides DSM 17374]
 gi|329749200|gb|AEC02556.1| (Uracil-5)-methyltransferase [Spirochaeta coccoides DSM 17374]
          Length = 392

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 84/353 (23%), Positives = 142/353 (40%), Gaps = 43/353 (12%)

Query: 29  QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KERMRIDYF-MPGSLLINA 85
           Q    +I    P     R  F+    G +L H+  D Q   K+R+ ID     G +  ++
Sbjct: 51  QAVVDEILEPSPQRVAPRCPFYDECGGCNLMHLSEDSQAEEKQRLFIDAMERTGGIPRDS 110

Query: 86  LMIEMMATIRLEPLLRAKLFQIDYLTSQSD------QAIVTLIYHRLLDDAWREC----A 135
           L++E  A+           F +D    Q+       +++V L    +L     E      
Sbjct: 111 LVLEPPASATGWEYRSRSAFHVDERLRQAGFLGRRSRSLVPLPSCPVLVSELSEVLAGRD 170

Query: 136 IRLRDALHARKYQIQLI-GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
            RL  A    K  +  I   A    I   +  V   +      + +      F Q N  +
Sbjct: 171 ERLWKAARKVKESLARISVFAGDADISYGKIPVVATV----DGIPFHVSAQVFFQSNRLL 226

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              ++ +VL+  KG    +++LY G G FS  L R    V+AVE     +E AR N    
Sbjct: 227 MPSLIRFVLSHVKGE--RVMDLYAGVGVFSAFLEREGHTVIAVEKEPDCLELARLNA--- 281

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                +    +++++  +M               S +  T+ VDPPR+GL  +   ++ +
Sbjct: 282 --PRTRFHTAATEKWHPSM---------------SEKVDTVVVDPPRTGLAPSVPALIAS 324

Query: 315 YP--HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +    ++Y+SC+  +L RDL   LS  ++     +FD +P T H E  V+L R
Sbjct: 325 WKPERVIYVSCDSVTLARDLRKFLSEGYSPTIAQVFDLYPQTSHYEAAVVLDR 377


>gi|213419975|ref|ZP_03353041.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 137

 Score =  162 bits (409), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 78/129 (60%), Positives = 95/129 (73%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 7   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 66

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R    LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 67  QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYH 126

Query: 125 RLLDDAWRE 133
           + LD+ WRE
Sbjct: 127 KKLDEEWRE 135


>gi|258405875|ref|YP_003198617.1| (Uracil-5)-methyltransferase [Desulfohalobium retbaense DSM 5692]
 gi|257798102|gb|ACV69039.1| (Uracil-5)-methyltransferase [Desulfohalobium retbaense DSM 5692]
          Length = 391

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 134/367 (36%), Gaps = 80/367 (21%)

Query: 13  QLAEKVDRLRQMMLAFQVPN--------LQIFRSEP-IHYRMRAEFHIWHDGDDLYHIMF 63
           QLA K   +   +                Q+  S     YR R + H+ H G        
Sbjct: 91  QLALKQAIMADTLRRHLGKEVPASVLESPQVVPSPKGWRYRWRGQLHV-HQGQPHLLG-- 147

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
            Q +  ++ I+  +  +  +   +  +   +           +     S  D A+ +   
Sbjct: 148 -QGSHAKVPIERCLLFARPLAEALPRLARDLPD--------GRHTVAASPVDHAVAS--- 195

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
                            AL   +  + L G                        L    +
Sbjct: 196 -----------------ALETHRLSLPLPG-----------------------GLAVDVL 215

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             +F Q N  +N  ++E  + +       + +LY G GNF L LA+  + V AVE   P+
Sbjct: 216 PQTFFQANQSLNPTLVEH-IRSWCPAGSRVADLYAGAGNFGLPLAQAGNPVFAVEGDGPA 274

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++AAR   A + +++ +  +         +R ER +       I  ++   +  DPPRSG
Sbjct: 275 LQAARTTAARSGLDHWQGRQAD-------LRHERAWK-----PILEFQPDVVVADPPRSG 322

Query: 304 LDDATVGM--VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGV 360
                  +  + +   I++ISC+  +  RD+ S L+    +  LALFD FP T HME   
Sbjct: 323 SGPVCRHLLHIPSLERIIWISCDLTNSARDVRSFLTQGWQLTSLALFDMFPQTWHMEGVF 382

Query: 361 LLVRKPS 367
           +L R+ S
Sbjct: 383 ILDRRGS 389


>gi|325292120|ref|YP_004277984.1| RNA methyltransferase [Agrobacterium sp. H13-3]
 gi|325059973|gb|ADY63664.1| RNA methyltransferase [Agrobacterium sp. H13-3]
          Length = 416

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 125/356 (35%), Gaps = 35/356 (9%)

Query: 15  AEKVDRLRQMM--LAFQVP--NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           A K + +   +       P  +L I R      R RA F        L        +   
Sbjct: 90  AFKRELVVSALRSKGLTPPVDDLVICRPGE---RRRAVFAARKTEKGLLLGFSQANSHHI 146

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + I+     S  I A +  + A I L     A+ F++  L + S   I       + D  
Sbjct: 147 VAIEECPVTSPGIVARLDAVRA-IGLSLASNAEPFRMTVLETLSGLDISVEGIKSVGDKQ 205

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            R     +       +  +         K  ++              +        FTQ 
Sbjct: 206 RRTLTETVLAMRGIARVALSGEILIEPQKPIIE-----------FGGIPVSPPAGGFTQA 254

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                  M E VLA   G    + +L+CG+G F+L LAR   RV AVE            
Sbjct: 255 TKQAEDAMAELVLA-HVGKSKRIADLFCGSGTFALRLAR-VGRVHAVE------------ 300

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                +  +     +++        +R+  R   +      +  +  DPPR+G +     
Sbjct: 301 AEDKPLKALDFAARNTQGLKPVSIEKRDLFRRPLMTSEMKNYDAVVFDPPRAGAEVQCRE 360

Query: 311 MVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           + + A   I+ +SCNP +L RDL+IL    + + R+   DQF ++ H+E    L +
Sbjct: 361 LARSAVKKIVAVSCNPLTLARDLAILVEGGYRVTRVTPVDQFLWSPHVEAVATLEK 416


>gi|119026073|ref|YP_909918.1| RNA methyltransferase [Bifidobacterium adolescentis ATCC 15703]
 gi|118765657|dbj|BAF39836.1| hypothetical RNA methyltransferase [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 421

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 134/383 (34%), Gaps = 68/383 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF---RSEP-----IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +      E      +H+R R E  I  
Sbjct: 84  GADLVHVSLPGQLKWKSTSIAEQMRRLGHVDVDVPIERMPEDEAEQGLHWRTRIEM-IAD 142

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
           +       M  + T  R+ ID     S  L+N    E +      P              
Sbjct: 143 ENGRPS--MRRRGTHVRVPIDTMPLASRALLNVAEKEHVWDGGFTP-------------- 186

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                I   +     +    +    L D                  ++      + E++T
Sbjct: 187 --GSQIRLSVPEPRGNAEIADNYAVLVDG-----------------EVTAGNRELTEKVT 227

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-----IQGDLLELYCGNGNFSLVL 227
           V GR   Y      F Q +    + +   V++   G         L +LY G+G F+L L
Sbjct: 228 VCGREFEYGVDAGGFWQMHRHAPIALTGHVMSLVHGELDGATSACLWDLYSGSGLFTLPL 287

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE  K +V+ A+ N+ A H+ NV        +    +R +        
Sbjct: 288 ATLSAGRTRMLSVEGGKTAVKHAQRNLRAIHLGNVDARVGDVAKTLANVRNDL------- 340

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-THTI 341
                 +   + +DPPR+G        +       ++YI+C+P SL RD + L++  + +
Sbjct: 341 -----AKPDIVVLDPPRAGARAKVCRQIAESGARSVVYIACDPASLARDTATLASLGYDL 395

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
             +  FD +P T H+E   L  +
Sbjct: 396 ADIRAFDIYPTTHHVETVALFRK 418


>gi|167533187|ref|XP_001748274.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773394|gb|EDQ87035.1| predicted protein [Monosiga brevicollis MX1]
          Length = 401

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 102/345 (29%), Positives = 160/345 (46%), Gaps = 26/345 (7%)

Query: 29  QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI---DYFMPGSLLINA 85
             P L++        R R  F +       +   + ++          D F+  +  I  
Sbjct: 62  DRPRLEVLPQAESGSRYRCLFQL-----LSHPYRYARRKHGIATALEGDEFVIAAPRIKL 116

Query: 86  LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD-AWRECAIRLRDALHA 144
           LM   +  +  +  L      +++  + SD +++ L+Y   LD+  WRE A   R AL  
Sbjct: 117 LMRAFLEHLASDDRLAKSCRSLNFHVTLSDDSMLALVYEEPLDEVGWREAAEACRTAL-- 174

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS-FTQPNAGINVHMLEW-- 201
                 ++GRA K  I L R +V ER  +     +Y+Q E S F+ P+A + +  ++W  
Sbjct: 175 --GLGTIVGRAKKQCIALPRTHVLERFPLQPGLDVYQQQEESIFSNPSAPMCLQTMQWLV 232

Query: 202 -VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            V     G   +LLELY G+G ++  +   F  VL+VEI +  VEAAR N+  NH  +  
Sbjct: 233 EVARQFGGTDLNLLELYSGSGTYTPAMCSVFAHVLSVEIQRTLVEAARRNLELNHCESRA 292

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            V  +  EF + + R RE            R+  + +DPPR GLDD T   +  +  ++ 
Sbjct: 293 TVHRAPVEFCRRLLRSREH--------EGRRYDAVLLDPPRDGLDDFTRSQLHNFEVVML 344

Query: 321 ISCNP-DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           ISC+P   L  D   L TTH + R+ + D FP TRH+E  V+ VR
Sbjct: 345 ISCSPLRKLILDAEALHTTHRLARMVILDHFPGTRHLEAAVVFVR 389


>gi|261209010|ref|ZP_05923415.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
 gi|260077049|gb|EEW64771.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
          Length = 364

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 95/273 (34%), Gaps = 29/273 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------LQIFRSEPIHYRMRAEFHIWHD 54
              L    Y+ QL  K D L Q +  F+            I   EP HYR +A+F +  +
Sbjct: 84  GCQLQHLAYQAQLDFKKDLLLQALEKFKPAGFRSYQLLPTIGMDEPWHYRNKAQFQLRKN 143

Query: 55  GD--DLYHIMFDQQTKERMRIDYFMPG-----------SLLINALMIEMMATIRLEPLLR 101
                +   +++  + + + I   +               L+N     +        + R
Sbjct: 144 KQTQKIEAGLYEANSHQLVPITDCLVQEPRTQKVMNTVVQLLNKFDAPIYDERTNSGIFR 203

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRD---ALHARKYQIQLIGRANK 157
             + +I   T +     +T        +A  RE   RL +    +   + Q   +   ++
Sbjct: 204 TIMVRIGVKTGELQVVFITRSKKFPQKNAMIREINERLPEVVSIMQNVQAQKTSLVMGDE 263

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLEL 216
           T     ++ ++E++      + +     +F Q N      +  E + A        +++ 
Sbjct: 264 TIHLWGKEAIEEQI----NEVTFDLSPRAFFQLNPQQTELLYGEGIKALDVQPNETIVDA 319

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           YCG G   L +A+    V  ++    ++  A+ 
Sbjct: 320 YCGVGTIGLSVAKQAKEVRGMDTVPQAIADAKK 352


>gi|220905512|ref|YP_002480824.1| (Uracil-5)-methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869811|gb|ACL50146.1| (Uracil-5)-methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 550

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 103/260 (39%), Gaps = 20/260 (7%)

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR----DYV 167
           S  +Q  V  +  +LL     +    L   +H  +     + +  K    LDR    +  
Sbjct: 297 SHEEQEKVRTVGQKLL-----QSFPALAGFIHEERASEDALAQGQKRIASLDRTGAHNPA 351

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL----AATKGIQGDLLELYCGNGNF 223
             R         +     SF Q N      + +  L             LL+LYCG G  
Sbjct: 352 SARFWQPLGGRHFALDAASFFQVNTAAAQVLADTALGMLKRHVSQESPALLDLYCGVGAP 411

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L++A    R+L +E    +V  A+ N AA    +   V   +     A R +R     +
Sbjct: 412 GLLMADRCGRLLGLEQDAKAVALAQANAAAMGFTHCSYVAGDA-----AQRLDRLAPAHE 466

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTI 341
           +    +  +  + VDPPR+GL    +  +       ILY+SCNP +L RD + L   + +
Sbjct: 467 NYWHPTETWDAVLVDPPRAGLAPRALNALLRLNAHTILYVSCNPATLARDAARLRGAYRL 526

Query: 342 ERLALFDQFPYTRHMECGVL 361
             +A  D FP+T H+EC  L
Sbjct: 527 VEMAAVDLFPHTPHVECLTL 546



 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 15/106 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-------EP--IHYRMRAEFHI- 51
              L    Y+ QL  K       M      +  +  S        P    YR + E    
Sbjct: 100 GCPLQTMPYDMQLQWKRRIALDAMSRIGGLDAGLVESLFTSVLPSPALEQYRNKMELAFA 159

Query: 52  --WHDGDDLYHIMFDQQTKERMRIDYF---MPGSLLINALMIEMMA 92
               +GD L   +  +  +  + +         +  I  +  ++ A
Sbjct: 160 GSGTEGDPLILGLRRRNGRGVVSVPQCALLPAAARDIVRMAADLAA 205


>gi|307108166|gb|EFN56407.1| hypothetical protein CHLNCDRAFT_22531 [Chlorella variabilis]
          Length = 486

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 34/194 (17%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEI 239
           +   NSF Q N      +   V AA      D+L +LYCG G+  L LA     V  VE+
Sbjct: 310 QVSANSFFQTNTRQAEALYGLVAAAAGLRATDVLLDLYCGTGSIGLTLAAACRHVHGVEV 369

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  +V  A  N A N + N   ++   ++                          + VDP
Sbjct: 370 SAAAVRDAERNAALNGIANASFLQGDLQKLQLQGLLP--------------HPDVVVVDP 415

Query: 300 PRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILS---------TTHTIERLALFD 348
            R GL  A V  ++      ++Y         RD+++L            + +  +   D
Sbjct: 416 ARPGLSPAVVDYLRECGARRVVY--------ARDIALLCGGGGGGGGAAPYRLVSVQPCD 467

Query: 349 QFPYTRHMECGVLL 362
            FP T H+E   +L
Sbjct: 468 LFPQTWHVETVAVL 481



 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 9/69 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL------QIFRSEPIH---YRMRAEFHIW 52
             +L   QY  QL  K  ++  ++               I    P H   YR R EF   
Sbjct: 67  GCSLQSLQYVAQLKAKKQQVADLLRRTAGVADVAAVLRPIVGCPPGHQYAYRNRMEFSFS 126

Query: 53  HDGDDLYHI 61
            +       
Sbjct: 127 REPGGQEAG 135


>gi|315656641|ref|ZP_07909528.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492596|gb|EFU82200.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 504

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 142/385 (36%), Gaps = 78/385 (20%)

Query: 10  YEQQLAEKVDRLR---------QMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGD 56
           Y  QL  K D +R         +++           ++   SEP   R R  F +   G 
Sbjct: 87  YPAQLRWKRDVVRDAIRRNGSSELLAELDQAHPGWEVESSGSEPG--RTRVSFTVCEGGG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                M++        +  F    LL+  L       + L+   R   F           
Sbjct: 145 L---GMYEAAAHNVHTVRSFP---LLVPEL-------VDLDLFRRHWEF----------- 180

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDERLT 172
                               RLR    +       +  A+     +D +     V E + 
Sbjct: 181 ----------------APGTRLRVIAPSNS---APVLFADGQTFSVDGEPTTSRVRETVH 221

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
           V+  T  YR    SF Q +      +   +  A   I+G +  ELY G+G FSL LA+  
Sbjct: 222 VSDLTFTYRIFSGSFWQTDRRAPAILAAALRDALGQIEGFEAWELYSGSGLFSLFLAQGL 281

Query: 232 D---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               R+  VE   P+ ++A YN+A    + V++ R      +  + R      +      
Sbjct: 282 GAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRRGD---VSPQLLRSLPMGEM------ 332

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYI-SCNPDSLCRDLSILST-THTIERLA 345
             +   +  DPPRSGL  A    + A +P ++ + SC+P S  RDL  +    + ++   
Sbjct: 333 VSQGTLVVADPPRSGLGKAVARAICAQHPDLVALFSCDPVSCARDLETMRQLGYRVKTWR 392

Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370
           +FD FPYT H+E  VLL +  S  +
Sbjct: 393 VFDLFPYTSHVETIVLLSKLDSKKY 417


>gi|241203350|ref|YP_002974446.1| (uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857240|gb|ACS54907.1| (Uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 416

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/356 (23%), Positives = 141/356 (39%), Gaps = 35/356 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           A K   +   + +  + +   +I  + P   R R  F       D+       ++   + 
Sbjct: 90  AFKRQLVIDALKSKGLTSEVGEIVPARP-GERRRVVFAARKTEKDMLVGFNQAESHHIVA 148

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I+     S  I A +  + A I       A+ F++  L + S   I      +L D   R
Sbjct: 149 IEECPISSAGIIARLPAIRA-IAASLATSAEPFRVAVLETLSGLDISVDDVKKLSDPQRR 207

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLTVAGRTLIYRQIENSFTQP 190
           +          A +  + L G A    + L+ + + E  +  V    +        FTQ 
Sbjct: 208 K----------AIETALSLRGIAR---VSLNGEILVEPSKPMVEFGGIQVSPPPGGFTQA 254

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                  M E V+A   G    + +L+ G+G FSL LAR   RV AVE    ++ A  + 
Sbjct: 255 TKPAEEAMAELVIA-HAGKSKRIADLFAGSGTFSLRLAR-IGRVHAVEAEAKALAALDH- 311

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            AA +   +K V +  ++  +     +EF            +  +  DPPR+G +     
Sbjct: 312 -AARNTQGLKPVTVEKRDLFRRPLMTQEFK----------PYDAVVFDPPRAGAEFQCQE 360

Query: 311 MVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           + +     I+ +SCNP +L RDL+IL    + I ++   DQF +T H+E    L +
Sbjct: 361 LARSGVKKIVAVSCNPLTLARDLAILVEGGYRITQVTPIDQFLWTSHVEVVATLEK 416


>gi|183222798|ref|YP_001840794.1| TrmA family RNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912829|ref|YP_001964384.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777505|gb|ABZ95806.1| tRNA (uracil-5-)-methyltransferase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781220|gb|ABZ99518.1| Putative RNA methyltransferase, TrmA family [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 383

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 129/369 (34%), Gaps = 68/369 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
             +     YE++L  K + L  M   ++     IF      YR   ++ +          
Sbjct: 76  GCSYRHLPYEEELKLKTNLLESMFPKWKGKTDVIFGPME-GYRNNVQWQVV----GNEIG 130

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
            F++ T + +        S L   +   ++       L +    Q ++            
Sbjct: 131 FFEKNTHQIV-----SKTSTLCKNVDKRLLVEDSKTFLTQNTKHQKNHTN---------- 175

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
                                H +K+   +  R +K KI     Y  E   +       +
Sbjct: 176 ---------------------HNQKFGRSISLRLSKEKIV---QYDLEETEIEVLGTQLK 211

Query: 182 QIENSFTQPNAGINVHMLEWVLAATK---GIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                F Q N      +LE  L   K        +LEL+CG G   + L      +  +E
Sbjct: 212 VPAKGFFQIN----QFLLETWLKKMKSLLPESSKVLELFCGCGTIGIALREKITSLYGIE 267

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               S++ A  N   N  N+ + V       T+ + +      LK       ++    V+
Sbjct: 268 SHDNSIQYAIENAKRNGTNSYQYV-------TKDLYKGYLPKELK-------QYAIWIVN 313

Query: 299 PPRSGLDDATVG-MVQAYPHI-LYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRH 355
           PPRSGL    +    +  P I +Y SCNP +L RDL +L    + ++ ++LFD FP T H
Sbjct: 314 PPRSGLSKGIIDSTTKLKPKIMIYSSCNPSTLQRDLRLLEAVGYRMDSMSLFDFFPRTNH 373

Query: 356 MECGVLLVR 364
            E  V L R
Sbjct: 374 YEVLVRLKR 382


>gi|240274747|gb|EER38262.1| tRNA(m5U54)methyltransferase [Ajellomyces capsulatus H143]
          Length = 562

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 138/422 (32%), Gaps = 86/422 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEPIHYRMRAEF------ 49
              L +  YE QL  K   L +    F     ++        + P+ Y  R +       
Sbjct: 154 GCQLQMLPYEDQLKHKRRILEKAYTNFSGLLPELIPAIRDTMASPLQYGYRTKLTPHFPM 213

Query: 50  --HIWH------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
              I        + +        +  +  + I+    G+ ++   M             R
Sbjct: 214 PTRIRRGSADGEESEMPPIGFMLKGRRTVIDIEDCPLGTDIVRLGMKRE----------R 263

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            ++ +  +  S+    ++     R   D  R        A    +  +       +    
Sbjct: 264 KRVAKSLHTYSKGATLLLRESTTRYYKDPGRRSPNGTERASSEERQPVHDEPVIRRE--- 320

Query: 162 LDRDYVDERLTV---------AGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKG 208
              DY++E+  +               ++     F Q N  I      ++ E  L     
Sbjct: 321 -YPDYIEEKRCITDQNSTSIEYVDNYKFQNKAGQFFQNNNSILAPFTQYIRENALLPPST 379

Query: 209 IQGD---------------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
                              LL+ Y G+G F++ L+  F   L ++I+  S+EAAR N  A
Sbjct: 380 SSSSPPSSSTTQRTSKLKYLLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARA 439

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + N                        KD+     +   + +DPPR G D+  +  + 
Sbjct: 440 NKLANTGF------------AAADAAAIFKDVPYPPDK-TLLVIDPPRKGCDNNFLQQLL 486

Query: 314 AYP--HILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLL 362
           +Y    ++Y+SCN  +  RD+ +L            + IE +  FD FP T H+E   +L
Sbjct: 487 SYGPARVVYVSCNVHTQARDVGVLVQGGNFKGEEVRYEIESIKGFDFFPQTGHVEGVAIL 546

Query: 363 VR 364
            +
Sbjct: 547 NK 548


>gi|154488844|ref|ZP_02029693.1| hypothetical protein BIFADO_02152 [Bifidobacterium adolescentis
           L2-32]
 gi|154082981|gb|EDN82026.1| hypothetical protein BIFADO_02152 [Bifidobacterium adolescentis
           L2-32]
          Length = 421

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/383 (20%), Positives = 134/383 (34%), Gaps = 68/383 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF---RSEP-----IHYRMRAEFHIWH 53
              L+      QL  K   + + M      ++ +      E      +H+R R E  I  
Sbjct: 84  GADLVHVSLPGQLKWKSMSIAEQMRRLGHVDVDVPIERMPEDEAEQGLHWRTRIEM-IAD 142

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
           +       M  + T  R+ ID     S  L+N    E +      P              
Sbjct: 143 ENGRPS--MRRRGTHVRVPIDTMPLASCALLNVAEKEHVWDGGFTP-------------- 186

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                I   +     +    +    L D                  ++      + E++T
Sbjct: 187 --GSQIRLSVPEPRGNAEIADNYAVLVDG-----------------EVTAGNRELTEKVT 227

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-----IQGDLLELYCGNGNFSLVL 227
           V GR   Y      F Q +    + +   V++   G         L +LY G+G F+L L
Sbjct: 228 VCGREFEYGVDAGGFWQMHRHAPIALTGHVMSLVHGELDGAASACLWDLYSGSGLFTLPL 287

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       R+L+VE  K +V+ A+ N+ A H+ NV        +    +R +        
Sbjct: 288 ATLSAGRTRMLSVEGGKTAVKHAQRNLRAIHLGNVDARVGDVAKTLANVRNDL------- 340

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-THTI 341
                 +   + +DPPR+G        +       ++YI+C+P SL RD + L++  + +
Sbjct: 341 -----AKPDIVVLDPPRAGARAKVCRQIAESGARSVVYIACDPASLARDTATLASLGYDL 395

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
             +  FD +P T H+E   L  +
Sbjct: 396 ADIRAFDIYPTTHHVETVALFRK 418


>gi|114685145|ref|XP_001166997.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A isoform 4
           [Pan troglodytes]
          Length = 562

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 118/373 (31%), Gaps = 67/373 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 179 PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQTE 238

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 239 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 298

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDALHA--- 144
                           Q+   TS+  QA+    +H  +L  +   E    L     A   
Sbjct: 299 TPYSAYDPETYTGHWKQLTVRTSRRRQAMAIAYFHPQKLSPEELEELKTSLAQHFTAGPG 358

Query: 145 -RKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                  L       +       + L+    D  +      L +R   ++F Q N     
Sbjct: 359 RASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +    +   G  +L++ CG G   L LAR   RV+ VE+   +VE AR N   N 
Sbjct: 419 VLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 478

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV+     +++    +        L              +DPPR+GL    +  ++  
Sbjct: 479 LSNVEFHCGRAEDLVPTLVSRLASQHL-----------VAILDPPRAGLHSKVILAIRRA 527

Query: 316 P---HILYISCNP 325
                +LY+SCNP
Sbjct: 528 KNLRRLLYVSCNP 540


>gi|325120649|emb|CBZ56204.1| hypothetical protein NCLIV_066290 [Neospora caninum Liverpool]
          Length = 1183

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 93/272 (34%), Gaps = 61/272 (22%)

Query: 141  ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
             L         I  ++ T+     D++ +++      L +R   +SF Q N+     + +
Sbjct: 781  FLEESDAASDCIDPSHPTEKIWGADFITQKVA----DLDFRVGPHSFFQTNSVTCALLYQ 836

Query: 201  WVLAATKGIQGD--LLELYCGNGNFSLVLARHFD-------------------------- 232
              L     +     L+++  G G  +L  A                              
Sbjct: 837  TALNCLMPLPPHTPLVDVCSGTGTIALCAASALKRETAAKGEAKGDLKQSSGAPEEAKDA 896

Query: 233  ---------RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRL 282
                     RV+ VE+ + +V  A  N   N +  +V  V   +++    + +ER     
Sbjct: 897  SETRGAAVPRVVGVEMVEEAVRNAEQNAERNQLAQDVDFVCGKAEDVLPRLLQER----- 951

Query: 283  KDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILST-- 337
                          VDPPR+GL    +  +   Q    ++YISCNP S+  +   L T  
Sbjct: 952  ----YRGCTDLAAIVDPPRAGLHSRVLEAILDFQPIKRLVYISCNPASMVANCVKLCTPS 1007

Query: 338  -----THTIERLALFDQFPYTRHMECGVLLVR 364
                      +    D FP+T H E  +LL R
Sbjct: 1008 PSNRDPFVPVQAVPVDMFPHTLHCEAVLLLSR 1039


>gi|219110143|ref|XP_002176823.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411358|gb|EEC51286.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 403

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 101/362 (27%), Positives = 157/362 (43%), Gaps = 54/362 (14%)

Query: 43  YRMRAEFHIWH-DGDDLYHIMFD-QQTKERMRIDYFMPGSLLINALMIEMMATIRLEP-- 98
           YR R  F I H D     H+ +  +Q  E + I  F   +L I   M  ++A        
Sbjct: 55  YRCRCSFQIVHGDMKSDGHLRYAVRQNHEPVCITAFPVANLRIQRSMWNVLALFNDPEEQ 114

Query: 99  --LLRAKLFQIDYLTSQSDQ-AIVTLIYHRLLDD--AW----RECAIRL-RDALHARKYQ 148
              L+  L    + TS  +   +VTL Y   + D  AW    +    RL    L  R  +
Sbjct: 115 FGQLKQSLTSATFSTSWDETMCVVTLHYMNPVSDESAWETEAQNMCQRLELAQLTGRSRK 174

Query: 149 IQLIGRANKTKICLDRDY-----------VDERLTVAGR-TLIYRQIENSFTQPNAGINV 196
             L  R   T I  D  +           +++ LT + R  + Y + E++F  PN+    
Sbjct: 175 RILRTRNEGTTIICDTIWMERVGSNWNVSLEKTLTSSDRIAVHYNKPEDAFYHPNSRAMC 234

Query: 197 HMLEW-------VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
           + LEW       ++A  + +   LLE+YCG G  ++ LA+     ++LA+E+ +  V A 
Sbjct: 235 NALEWMLSRIVLIVADLETLTPRLLEMYCGCGAHTIPLAKTGLLSKILAIELDERLVRAC 294

Query: 248 RYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           + NI  N +++  + +V   + +++Q                    F  I VDPPR GLD
Sbjct: 295 QQNILLNGIDSELIDMVSQDAGKWSQRCES---------------SFDIILVDPPRQGLD 339

Query: 306 DATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           ++   M     + H+LYISC  D+L RDL  L  +  +E   L D FP T  +E  V L 
Sbjct: 340 ESVCQMATRGDFQHMLYISCGRDALVRDLERLGGSFAVENCTLLDLFPTTGAVESLVHLK 399

Query: 364 RK 365
           RK
Sbjct: 400 RK 401


>gi|306845067|ref|ZP_07477647.1| 23S ribosomal RNA uracil-5-methyltransferase rumA [Brucella sp.
           BO1]
 gi|306274482|gb|EFM56277.1| 23S ribosomal RNA uracil-5-methyltransferase rumA [Brucella sp.
           BO1]
          Length = 415

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 132/353 (37%), Gaps = 32/353 (9%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +      V    +    P H R RA F        +       Q+ E + I
Sbjct: 88  WKRELVVGALKGRGIDVEVAPLVACSP-HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++     L     +K F++    ++S   +      +L DD    
Sbjct: 147 VECPVTVPEIIARLDDLREVGALLAP-GSKPFKLAATLTESGLDLAASGCGKLNDDQ--- 202

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                R AL A   +      +++ +I ++     ++  +    +        F Q  A 
Sbjct: 203 -----RRALTALVIKKDFARLSHEGEIIVE----PKKPLIHFGKVPVSVPPGCFLQATAE 253

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M   VLA   G    + +L+CG G F+L +A     V AVE    ++ A       
Sbjct: 254 AEETMAALVLA-HLGKARRVADLFCGVGTFALRIAEKSA-VHAVENDAAALAALDR---- 307

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                V+ V+             R+  R   +      +  +  DPPR+G ++  + + +
Sbjct: 308 ----GVRHVQG----LKPVSIERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALELAK 359

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L +
Sbjct: 360 SKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|294787031|ref|ZP_06752285.1| putative TRAM domain protein [Parascardovia denticolens F0305]
 gi|315226679|ref|ZP_07868467.1| 23S rRNA methyltransferase/RumA [Parascardovia denticolens DSM
           10105]
 gi|294485864|gb|EFG33498.1| putative TRAM domain protein [Parascardovia denticolens F0305]
 gi|315120811|gb|EFT83943.1| 23S rRNA methyltransferase/RumA [Parascardovia denticolens DSM
           10105]
          Length = 457

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 130/370 (35%), Gaps = 36/370 (9%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI----FRSEP----IHYRMRAEFHIWHDGDDLYHIM 62
             QLA K   +   M       + +       +     +H+R R +     +G   +  M
Sbjct: 107 PGQLAWKKAVIEDQMRRLGHVEVSVPVHRLPEDEAEGGLHWRTRLDLVADEEG---HPSM 163

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
             +++ +R+ +      S         ++     E L   +    D++     +      
Sbjct: 164 RRRESHQRVALTDMPTAS-------QRLLGVAAAEDLWNHRFDPNDHIRISVPEPRSLAG 216

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
             +   D     AI L   + + +  +        +   L  D        +  +  Y  
Sbjct: 217 EAKDGKDNEDNYAIVLNGKVISGRRNLSERVL--LSNPALPGDDGSHTQFDSFDSFDYTV 274

Query: 183 IENSFTQPN----AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLA 236
               F Q +      +   ++  ++A+       L +LY G+G F+L +A  F   +VL+
Sbjct: 275 DAEGFWQVHRCAPTVLAQAVVNALMASGADQASTLWDLYSGSGLFTLPMATFFPQAQVLS 334

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +E A  +V+ A  NI    +N  K +     +  + +R                +   I 
Sbjct: 335 IEGAPVAVKNAHKNIKQARLN--KTITALEGDVAETIRSLTAHGH-----AQLTKPDIIL 387

Query: 297 VDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           +DPPR+G        +       I+Y+SC+  +L RD + L    + I  +  +D +P T
Sbjct: 388 LDPPRAGAGRKVCQQMAESGAKAIIYVSCDVTNLARDTAYLTEAGYHISDIQAYDIYPMT 447

Query: 354 RHMECGVLLV 363
            H+E   L  
Sbjct: 448 HHVETVALFS 457


>gi|256825305|ref|YP_003149265.1| 23S rRNA methyluridine methyltransferase [Kytococcus sedentarius
           DSM 20547]
 gi|256688698|gb|ACV06500.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Kytococcus sedentarius DSM 20547]
          Length = 413

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 130/394 (32%), Gaps = 42/394 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF--QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           S TL+   Y  QL  K   +R ++ A            S P  +R +A+F +        
Sbjct: 30  SCTLMGTPYRVQLQRKDAVVRDLLAAQVPATAWEAPLASVPEGFRTKAKFVVSGSAAAPT 89

Query: 60  HIMFDQQTKER------MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
             + D+  +        + +      +  +   +             R +L  +    + 
Sbjct: 90  LGILDEAGRGVDLRDCGLHVPELAAVADRLARFVTRAALPPYDLARRRGELKHLVLTAAP 149

Query: 114 SDQAIV--TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYVDER 170
           S   ++   L     L    RE    L   L   +     +   +K  +  +    + E+
Sbjct: 150 SGDLMLRFVLRTEGPL-PRIREHLPGLLADLPQLRVVSANLHPEHKATLSGEVEIALTEQ 208

Query: 171 --LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
             L +    +       +F Q N  +   + +   A         + +LYCG G F+L  
Sbjct: 209 TLLPLELPGVTLFAGPGAFVQTNTTVAAALYQQATAWLVDAGARRVADLYCGVGGFALHA 268

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAAN----HVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           A      + VEIA  +V  AR   AA          + V   + +    +          
Sbjct: 269 AAAGTEAVGVEIAADAVRGARAGAAALTQRPGGGAARFVVADASDPAAVLAA-------- 320

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY----------PHILYISCNPDSLCRDLS 333
                      + V+PPR GL      M+ A             ++Y SCNP +L  DL+
Sbjct: 321 ----AGTDRDAMVVNPPRRGLGPDLPAMLDARSPAADPASALRTLVYSSCNPATLATDLA 376

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            L     +    LFD FP T H E  VLL  + +
Sbjct: 377 GLPH-WQVRSARLFDMFPNTDHAEVVVLLEPRTA 409


>gi|330916172|ref|XP_003297319.1| hypothetical protein PTT_07680 [Pyrenophora teres f. teres 0-1]
 gi|311330063|gb|EFQ94576.1| hypothetical protein PTT_07680 [Pyrenophora teres f. teres 0-1]
          Length = 559

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 147/418 (35%), Gaps = 86/418 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR------SEPIHYRMRAEFHIWHDG 55
                +  Y+ QL  K   + +    F     ++          P+ Y  R +     DG
Sbjct: 173 GCQFQMLPYDFQLQHKRSIVEKAYKNFSNLPPELIPTIGDTIGSPLQYGYRTKLTPHFDG 232

Query: 56  ------------------DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
                             +        + T+  + I+    G+  + A        +   
Sbjct: 233 PPDARRSDGRNGIKRTFKELPPIGFMKKGTRTTIDIEDCPIGTDAVRAGNKRERKRVA-- 290

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR-KYQIQLIGRAN 156
                     D L++          YHR      RE   R+  A +   K +       +
Sbjct: 291 ----------DTLST----------YHRGATLLLRESTARIPKADYDVSKEEDSDAIVED 330

Query: 157 KTKICLDRDYVDE---RLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGI 209
           +      +  + +   + T       +     SF Q N  I      ++ E +L +T G 
Sbjct: 331 RGDHVHIKTCITDSNAKSTEYIDDFQFVNPAGSFFQNNNSILPVFTQYIREHILPSTPGH 390

Query: 210 Q-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSS 266
           +   L++ Y G+G F++ L+  F   L ++I+  S+E+A  N   N++  ++ + +   +
Sbjct: 391 KITHLIDAYSGSGLFTITLSSLFKSSLGIDISSSSIESASTNARLNNLPESSTRFIAADA 450

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCN 324
                ++    E                + +DPPR G D++ +  +VQ  P  ++Y+SCN
Sbjct: 451 ARLFSSIESPAE-------------ETVVMLDPPRKGCDESFLRQLVQYGPARVVYVSCN 497

Query: 325 PDSLCRDLSILSTT--------------HTIERLALFDQFPYTRHMECGVLLVRKPSG 368
             +  RD+ +L                 + IE L  FD FP T H+E   +L RK  G
Sbjct: 498 VHTQARDIGVLVGGMKGVDGGFGKGEGCYEIESLRGFDFFPQTGHVEGVAVLTRKAGG 555


>gi|221135234|ref|ZP_03561537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Glaciecola sp.
           HTCC2999]
          Length = 484

 Score =  160 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 142/385 (36%), Gaps = 52/385 (13%)

Query: 12  QQLAEKV----DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
             LA K     + + Q + A ++P      S P  YR +A   I         + F Q +
Sbjct: 120 ALLALKQTALDEYVHQHIGAIELPWRAPVLSAPQ-YRRKARLAIDARDKQAIKVGFRQTS 178

Query: 68  -KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT--SQSDQAIVTLIYH 124
            K  M I    P   ++   +  ++  I         L  + ++T     DQ +V     
Sbjct: 179 AKTVMSI----PQCEVLEGALQPVLNAIHTSSAQWHWLIHVGHITLLESRDQIVVAFNTQ 234

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRA-NKTKICLDRDYVDERLTVA--------- 174
           + L    ++    L+    A +  I +  +   K    L  +   + LT+          
Sbjct: 235 QPLS---KQALAALQAFSQAHEVLIAVTVKGVPKGVPSLPHNDDAKWLTLHWADDNDAMN 291

Query: 175 ------------GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
                            Y    + F Q NA +N  M+   +        D +++L+CG+G
Sbjct: 292 VSLAQPDLWLTSIDECQYPVGLDDFIQVNASLNQAMIYTSIDLLALAPDDRVVDLFCGSG 351

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           NFS+ +A+  + VL +E  +  V+ A     A+ V+NV  +       ++AM        
Sbjct: 352 NFSVPIAKQTEYVLGIEGVEAMVQQANQGAVASGVDNVTFLHADLT-TSEAMHA------ 404

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDLS-ILSTTH 339
                I + +   + +DP R G       + +Q +  I+Y+SCNP S   D+  +L    
Sbjct: 405 -----IKAAKCNKLLLDPSREGAKAILAQVDLQQFERIVYVSCNPQSWVHDIQLLLDAGF 459

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
             +    FD F  T H E   +  R
Sbjct: 460 ACQHTQFFDMFAGTTHTELVSVFTR 484


>gi|311742639|ref|ZP_07716448.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314267|gb|EFQ84175.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 401

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/336 (20%), Positives = 124/336 (36%), Gaps = 58/336 (17%)

Query: 39  EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98
             + +R R     W         +   ++ E + +D        +  + ++         
Sbjct: 114 PDLGWRTRV---TWAVDGAGRAGLRRHRSHEVVPVDRCEIAHPGLPDVHLQEWDD----- 165

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARKYQIQLIGRANK 157
                            +AIV+   HRLL  DA  E A+            +   G A  
Sbjct: 166 --------------DRVEAIVSSAGHRLLVTDATVEDALEAATDGVVAVDGVVRAGSAAL 211

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
           T++                   +R   + F Q +      +++ V+A      GD++ +L
Sbjct: 212 TEVV--------------EHHEFRVTGSGFWQVHPAAAGTLVDAVMAGAAVRPGDVVADL 257

Query: 217 YCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           Y G G F+  LA        V +VE    +   AR N     +++V  VR+ +    +A+
Sbjct: 258 YAGVGLFTAFLADAVGPDGLVHSVEADPVAARDARRN-----LHDVAQVRLHAATTERAL 312

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDL 332
           R            +   R   + +DPPR+G       +    P  +++++C+P +L RDL
Sbjct: 313 RD----------GLVGDRADVVVLDPPRAGAKRVVEAVAALGPRTVVHVACDPAALARDL 362

Query: 333 SILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           +  +   + +  L  F  FP T H+EC  LL++  S
Sbjct: 363 AGFAAAGYRLADLRGFALFPMTHHVECVALLIKTGS 398


>gi|308799347|ref|XP_003074454.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
           (ISS) [Ostreococcus tauri]
 gi|116000625|emb|CAL50305.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
           (ISS) [Ostreococcus tauri]
          Length = 652

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 84/253 (33%), Gaps = 57/253 (22%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
           D + ER+      L +     +F Q N      +              LL ++ CG G  
Sbjct: 404 DVIHERMC----GLEFSLSATAFFQVNTLAAEALYRLAGEWASPNGKSLLLDVCCGTGTI 459

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + LA +  +V+ V+I + S++ A  N   N V N   +   ++     + RE       
Sbjct: 460 GMTLAGNVKKVVGVDIVEESIKDAFVNAQLNGVTNTDWLAGKAEVVIPKVLREYNSRIRP 519

Query: 284 DIDIHSYRFK--------------------------------------TIFVDPPRSGLD 305
            +D      K                                         VDPPR GL 
Sbjct: 520 VVDAPKIGTKRKATSNDPELSDGSDDEAAIQAAVTTIIDENEYEFDDVVAIVDPPRGGLH 579

Query: 306 DATVGMVQAY---PHILYISCNPDSLCRDLSILS-----------TTHTIERLALFDQFP 351
            + +  ++       ++Y+SCN  ++ +++  L                  +    D FP
Sbjct: 580 RSVLTALRREKRLKRLVYVSCNSSTMAKNVIDLCAPQGYDGNGGGAPFAPVKAIALDLFP 639

Query: 352 YTRHMECGVLLVR 364
           +T H+E  VLL R
Sbjct: 640 HTAHVEAIVLLER 652


>gi|269956702|ref|YP_003326491.1| deoxyribonuclease/rho motif-related TRAM [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305383|gb|ACZ30933.1| deoxyribonuclease/rho motif-related TRAM [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 447

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/379 (18%), Positives = 134/379 (35%), Gaps = 55/379 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF-RSEP-------IHYRMRAEFHIWH 53
            G L     + Q   K   +R+ +      + ++   + P       +HYR R +     
Sbjct: 108 GGELAFVSLDGQRRWKAAVVREQLQRLAKIDREVVVEAAPGDDARGGLHYRTRVDLVADG 167

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           +G      M   ++ + + +D    G+  + AL       +           +++ +   
Sbjct: 168 EG---RAGMRKFRSHDVVPLDAMPLGTADVAALADA--EGVFTRRWTPG--ARLELVAPA 220

Query: 114 SDQAIVTLIYHRLLDDAWRECAI-RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
                V L+      + WR   + R  +A  A    +  +  A                 
Sbjct: 221 DGSEPVLLVD----GELWRGGRVDRRPNARRAVGESVTPLRAAG---------------- 260

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
               T  YR   + F Q +      +   VL A     G  +++LY G G F+L LA   
Sbjct: 261 -PAETFRYRVAADGFWQNHREAPAVLSGAVLDAVGDASGATVIDLYSGAGLFTLPLAGVV 319

Query: 232 DRVLAV---EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
                V   E    +V+ AR N   +H+  V++   +                       
Sbjct: 320 GTGGRVVAVEGDTRAVKDARRNA--HHLPQVELHLGAVDRVLADGDSG---------GAG 368

Query: 289 SYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLA 345
                 + +DPPR+G   + V  +  +    ++Y++C+P +L RD++  +   + +  L 
Sbjct: 369 VGAADVVVLDPPRAGAGRSVVEAIVQRGPARVVYVACDPAALARDVAYFAGHGYELADLR 428

Query: 346 LFDQFPYTRHMECGVLLVR 364
            FD FP+T H+E   +L R
Sbjct: 429 AFDLFPHTHHVEAVAVLTR 447


>gi|213423951|ref|ZP_03356931.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 355

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 116/366 (31%), Gaps = 45/366 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L +++    V            H+R +A+  +    +    
Sbjct: 13  SCQWITQSVNEQLSAKTADLHRLLAGLPVEQWCAPISGPEQHFRNKAKMVVSGSVEKPLF 72

Query: 61  IMFDQQTKERMRIDYF----MPGSLL---------INALMIEMMATIRLEPLLRAKLFQI 107
            M  +       +D       P S           I    +      R    L+  L   
Sbjct: 73  GMLHRDG---TPVDLCACPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYLLLTE 129

Query: 108 DYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICL 162
                      V     +L  L  A      +L   L      IQ +  A    +T+I L
Sbjct: 130 SQFDGGMMLRFVLRSETKLTQLRAALPWLRAQLPQ-LRVITANIQPVHMAIMEGETEIYL 188

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNG 221
                 + L      +       SF Q N  +   +          +    + +L+CG G
Sbjct: 189 TD---QQALAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVG 245

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F L  A    ++  +EIA  ++  A+ + A   +  +    + S +F  A         
Sbjct: 246 GFGLHCATPQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA--------- 296

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTH 339
                        + V+PPR G+       + Q  P  I+Y SCN  ++ +D+  L   +
Sbjct: 297 ------QGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSCNAQTMAQDIRHLPN-Y 349

Query: 340 TIERLA 345
            I+R+ 
Sbjct: 350 RIQRVQ 355


>gi|328461884|gb|EGF34102.1| RNA methyltransferase family protein [Lactobacillus helveticus MTCC
           5463]
          Length = 386

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 105/292 (35%), Gaps = 26/292 (8%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHDGDD 57
           L    YE+QL  K + + + +  +   N         I   +  HYR +A++ I +    
Sbjct: 91  LAHLSYEKQLEFKRNNMLESLRKYHPRNYAKYKVKKTIPAPDEWHYRNKAQYQIENIHGK 150

Query: 58  LYHIMFDQQTKERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQ 106
               +F   +   + +      S            LI  L + +    R  P ++  + +
Sbjct: 151 TKLGLFAPNSHRLIDLPKMPTQSEDTQKTEREIKVLIEKLHVPVANFRRHLPGVKTIVVR 210

Query: 107 IDYLTSQSDQAIVTLIYH-RLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLD 163
               T +    ++T+ +  + L    +E      +                 NKT+  L 
Sbjct: 211 QSEATKEIQVTLITIGHKIKNLIPLAKEIMKLDNVVSVYQNETEWQNPQVWGNKTEKLLG 270

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGN 222
           ++ + E +      L       +F Q N    V++    L          L++ Y G G 
Sbjct: 271 KNQIMEEILGKKFAL----SPRAFFQLNPVQTVNLYSEALKYLDLTPDQTLIDAYSGVGT 326

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
             ++ A    +V+ +E    +V+ A++N+  NH+ N   ++ S ++    ++
Sbjct: 327 LGILAADRVKQVIGIETIPEAVKDAQHNVELNHIKNADYIQGSVEKVLPELK 378


>gi|328869968|gb|EGG18343.1| 23S rRNA (Uracil-5-)-methyltransferase [Dictyostelium fasciculatum]
          Length = 1231

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 132/337 (39%), Gaps = 20/337 (5%)

Query: 43   YRMRAEFHIWHDGD-DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
            YR RA   +  +   +   + +D       +++Y       +  + +E+   I     L 
Sbjct: 901  YRRRARLRVHFNRKTNKIDVGYDSPKITSFQVEYCPVLVKELQRMPVELSKLI---ESLS 957

Query: 102  AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-KI 160
             KL       +++D   +T    R+L+       I++++        I L      + + 
Sbjct: 958  IKLQIPSIEVTRADN--ITSFSIRVLEAPEESDRIKIQEFGKQHDAIIILQHGGPGSFEK 1015

Query: 161  CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCG 219
                 +VD + +     +        F Q NA  N  M++ VL         +  +LYCG
Sbjct: 1016 IYPEHHVDMKYS-PIEGITLNISPVDFMQVNANANTVMVQKVLDYLNLNPSDNCYDLYCG 1074

Query: 220  NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN----------VKIVRMSSKEF 269
             GNF++ +A+    V+  E+++  +    +N+  N+V             + +     + 
Sbjct: 1075 VGNFTIPMAKKAGSVIGFELSQELLTKLIHNVHLNNVKGKVQAVLCNLFTEDIPFCGNDV 1134

Query: 270  TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS-L 328
                  +    + + I+    R   I +DPPRSG       +      I+Y+SC P++ L
Sbjct: 1135 ALENGVDATQQQQQQIENTPMRINKIVLDPPRSGAQKICRSIPPGLDCIVYVSCGPETSL 1194

Query: 329  CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +DL +LS  + ++ + L D F  T  ME    L+ K
Sbjct: 1195 VKDLLLLSPNYQVKEIKLLDMFAQTSKMEAIAYLIPK 1231


>gi|16552598|dbj|BAB71349.1| unnamed protein product [Homo sapiens]
          Length = 562

 Score =  160 bits (405), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 118/373 (31%), Gaps = 67/373 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 179 PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQTE 238

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 239 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 298

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDALHA--- 144
                           Q+   TS+  QA+    +H  +L  +   E    L     A   
Sbjct: 299 TPYSAYDPETYTGHWKQLTVRTSRRHQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPG 358

Query: 145 -RKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                  L       +       + L+    D  +      L +R   ++F Q N     
Sbjct: 359 RASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +    +   G  +L++ CG G   L LAR   RV+ VE+   +VE AR N   N 
Sbjct: 419 VLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 478

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV+     +++    +        L              +DPPR+GL    +  ++  
Sbjct: 479 LSNVEFHCGRAEDLVPTLVGRLASQHL-----------VAILDPPRAGLHSKVILAIRRA 527

Query: 316 P---HILYISCNP 325
                +LY+SCNP
Sbjct: 528 KNLRRLLYVSCNP 540


>gi|315655450|ref|ZP_07908350.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490390|gb|EFU80015.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 413

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 143/379 (37%), Gaps = 78/379 (20%)

Query: 10  YEQQLAEKVDRLR---------QMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGD 56
           Y  QL  K D +R         +++           ++   SEP   R R  F +   G 
Sbjct: 87  YPAQLRWKRDVVRDAIRRNGSSELLAELDQAHPGWEVESSGSEPG--RTRVSFTVCEGGG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                M++        +  F    LL+  L       + L+   R   F           
Sbjct: 145 L---GMYEAAAHNVHTVRSFP---LLVPEL-------VDLDLFRRHWEFTPG-------- 183

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDERLT 172
                               RLR    +    +  +   +   + +D +     V E ++
Sbjct: 184 -------------------TRLRVIAPSSSAPVLFV---DGQTLSVDDEPTTSRVRETVS 221

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
           V  RT  YR    SF Q +      +   +L A   ++G +  ELY G+G FSL LA+  
Sbjct: 222 VGERTFTYRIFAGSFWQTDRRAPATLAAALLGAIGEVEGFEAWELYSGSGLFSLFLAQAV 281

Query: 232 D---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               R+  VE   P+ ++A YN+A    + V++ R      +  + R      +      
Sbjct: 282 GAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRRGD---VSPQLLRSLPMGEM------ 332

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYI-SCNPDSLCRDLSILST-THTIERLA 345
             +   +  DPPRSGL  A    + A +P ++ + SC+P S  RDL  +    + ++   
Sbjct: 333 VSQGTLVVADPPRSGLGKAVARAICAQHPDLVALFSCDPVSCARDLETMRQLGYRVKTWR 392

Query: 346 LFDQFPYTRHMECGVLLVR 364
           +FD FPYT H+EC  L+ R
Sbjct: 393 VFDLFPYTSHVECVCLMTR 411


>gi|325094100|gb|EGC47410.1| tRNA(m5U54)methyltransferase [Ajellomyces capsulatus H88]
          Length = 562

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 138/422 (32%), Gaps = 86/422 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRA--EFHI 51
              L +  YE QL  K   L +    F     ++        + P    YR +    F +
Sbjct: 154 GCQLQMLPYEDQLKHKRRILEKAYTNFSGLLPELIPAIRDTMASPLQYGYRTKLTPHFPM 213

Query: 52  ----------WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
                       + +        +  +  + I+    G+ ++   M             R
Sbjct: 214 PTRIQRGSADGEESEMPPIGFMLKGRRTVIDIEDCPLGTDIVRLGMKRE----------R 263

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            ++ +  +  S+    ++     R   D  R        A    +  +       +    
Sbjct: 264 KRVAKSLHTYSKGATLLLRESTTRYYKDPGRRSPNGTERASSKERQPVHDEPVIRRE--- 320

Query: 162 LDRDYVDERLTV---------AGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKG 208
              DY++E+  +               ++     F Q N  I      ++ E  L     
Sbjct: 321 -YPDYIEEKRCITDQNSTSIEYVDNYKFQNKAGQFFQNNNSILAPFTQYIRENALLPPST 379

Query: 209 IQGD---------------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
                              LL+ Y G+G F++ L+  F   L ++I+  S+EAAR N  A
Sbjct: 380 SSSSPSSSSTTQRTSKLKYLLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARA 439

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + N                        KD+     +   + +DPPR G D+  +  + 
Sbjct: 440 NKLANTGF------------AAADAAAIFKDVPYPPDK-TLLVIDPPRKGCDNNFLQQLL 486

Query: 314 AYP--HILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLL 362
           +Y    ++Y+SCN  +  RD+ +L            + IE +  FD FP T H+E   +L
Sbjct: 487 SYGPARVVYVSCNVHTQARDVGVLVQGGNFKGEEVRYEIESIKGFDFFPQTGHVEGVAIL 546

Query: 363 VR 364
            +
Sbjct: 547 NK 548


>gi|284031682|ref|YP_003381613.1| deoxyribonuclease [Kribbella flavida DSM 17836]
 gi|283810975|gb|ADB32814.1| deoxyribonuclease/rho motif-related TRAM [Kribbella flavida DSM
           17836]
          Length = 389

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 122/360 (33%), Gaps = 77/360 (21%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           +Q   K   +   +         +    P    + +R R  + +   G      MF  ++
Sbjct: 95  EQRRLKATVVSDTLRRIGGIERTVVMESPGDDGLGWRTRMRYAVV--GGRP--GMFAHRS 150

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + ID  +       A+                                        +
Sbjct: 151 HDLIPIDRCLIAHPDSPAV----------------------------------------V 170

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W +               +Q +  +      L  +    R+    R   +R     F
Sbjct: 171 DQRWPDT------------SSVQAVVSSEGKTAVLTDEKAGGRVVEVVRGRRFRVEAGGF 218

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q +      +++ VL+  +  +G+  L+LY G G F+  LA     VLAVE  + +V+ 
Sbjct: 219 WQVHPAAATTLVDAVLSGLEPREGETALDLYSGVGLFAAFLAEAGCGVLAVEGDRDAVKN 278

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR N     ++++  V +   +  + + R         +         + +DPPR+G   
Sbjct: 279 ARRN-----LHDLTGVTLEQGDVDRVLNRA--------VAQGLEHVDLVVLDPPRTGAGQ 325

Query: 307 ATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
             V  +       + Y++C+P +L RDL   +   + +  L  FD F  T H+EC  +L 
Sbjct: 326 HVVRRIAGLSPRRVAYVACDPAALARDLKTFAGLGYGVSSLRAFDLFGMTHHIECVAVLE 385


>gi|212715602|ref|ZP_03323730.1| hypothetical protein BIFCAT_00501 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660969|gb|EEB21544.1| hypothetical protein BIFCAT_00501 [Bifidobacterium catenulatum DSM
           16992]
          Length = 421

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 131/372 (35%), Gaps = 68/372 (18%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIF---RSEP-----IHYRMRAEFHIWHDGDDLYHIMFD 64
           QL  K   + + M      ++++      E      +H+R R E     DG      M  
Sbjct: 95  QLKWKATSVAEQMARLGHVDVEVPIERMPEDDAEQGLHWRTRIEMIADVDGRPS---MRR 151

Query: 65  QQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           + T  R+ ID     S  L+     E +     EP             SQ   ++     
Sbjct: 152 RGTHVRVPIDTMPLASRTLLEVAEREHVWEGSFEPG------------SQIRLSVPEPRD 199

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           +  + D +                           ++      + E++TVAG    Y   
Sbjct: 200 NAPISDNYAVLVN---------------------GEVVAGSRELTEKVTVAGHEFEYNVD 238

Query: 184 ENSFTQPNAGINVHMLEWVLAATKG-----IQGDLLELYCGNGNFSLVLARHFD---RVL 235
              F Q +    + +   V+   +G         L +LY G+G F+L LA       R+L
Sbjct: 239 AGGFWQMHRHAPIALTNHVIDLVRGELDGAKSACLWDLYSGSGLFTLPLATLTAERTRML 298

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           +VE  K +V  A+ N+   H+ NV        +    +R +              +   +
Sbjct: 299 SVEGGKTAVRNAQRNLRHIHLGNVDARVGDVAKTLANVRNDL------------AKPDVV 346

Query: 296 FVDPPRSGLDDATVGMVQAYPHI--LYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
            +DPPR+G        +        +YI+C+P SL RD + L S  + +  +  FD +P 
Sbjct: 347 VLDPPRAGARAKVCRQIAEVEAKSAVYIACDPASLARDTATLVSLGYELADIRAFDIYPM 406

Query: 353 TRHMECGVLLVR 364
           T H+E   L  +
Sbjct: 407 THHVETVALFRK 418


>gi|119623401|gb|EAX02996.1| HpaII tiny fragments locus 9C, isoform CRA_b [Homo sapiens]
 gi|119623402|gb|EAX02997.1| HpaII tiny fragments locus 9C, isoform CRA_b [Homo sapiens]
          Length = 562

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 118/373 (31%), Gaps = 67/373 (17%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 179 PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQTE 238

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 239 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 298

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDALHA--- 144
                           Q+   TS+  QA+    +H  +L  +   E    L     A   
Sbjct: 299 TPYSAYDPETYTGHWKQLTVRTSRRHQAMAIAYFHPQKLSPEELAELKTSLAQHFTAGPG 358

Query: 145 -RKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                  L       +       + L+    D  +      L +R   ++F Q N     
Sbjct: 359 RASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +   +    +   G  +L++ CG G   L LAR   RV+ VE+   +VE AR N   N 
Sbjct: 419 VLYTVIQDWAQLDAGSMVLDVCCGTGTIGLALARKVKRVIGVELCPEAVEDARVNAQDNE 478

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV+     +++    +        L              +DPPR+GL    +  ++  
Sbjct: 479 LSNVEFHCGRAEDLVPTLVSRLASQHL-----------VAILDPPRAGLHSKVILAIRRA 527

Query: 316 P---HILYISCNP 325
                +LY+SCNP
Sbjct: 528 KNLRRLLYVSCNP 540


>gi|260945193|ref|XP_002616894.1| hypothetical protein CLUG_02338 [Clavispora lusitaniae ATCC 42720]
 gi|238848748|gb|EEQ38212.1| hypothetical protein CLUG_02338 [Clavispora lusitaniae ATCC 42720]
          Length = 535

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 142/398 (35%), Gaps = 76/398 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-------NLQIFRSEPIHYRMRAEF----- 49
              + +  YE QL  K D +++    F          +       P+ Y  R +      
Sbjct: 175 GCQIQMISYEDQLKFKADVIQRAYRYFHPELKLEELHDFGFVVPSPLQYSYRTKLTPHAK 234

Query: 50  --HIWHDGDDLYHIMFD--QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF 105
                   D    + FD  ++    + I      +  IN  +  +    +          
Sbjct: 235 VPRSLAKTDLPLAVGFDSIRKISPLVDIQNCPIAAPSINKTIPYLKERFQ---------- 284

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR- 164
                  ++ +  +     + +D  +      LRD++             +   +CL R 
Sbjct: 285 -------KTLEECLETGSKKKIDSNFL-----LRDSMQIDGET------GSHEYVCLTRR 326

Query: 165 -DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGN 220
            + + E++       +++   N F Q N  I    LE++   L+   G    L++ YCG+
Sbjct: 327 NNVITEKIG----EFLFQFEANEFFQNNRSILPTFLEFIKFHLSQIPGGYTHLIDAYCGS 382

Query: 221 GNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNN---VKIVRMSSKEFTQAMR 274
           G   + L+       +V  +EI+K S+  A++N   N ++    V+ V  +S       +
Sbjct: 383 GFLGISLSDTLPQDGKVFGIEISKKSIAYAKHNAGINGLDRINKVQFVHGNSDSMFTDEQ 442

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDL 332
             R     KD          + ++P R G  +  +  +       I+YISCN  S  RDL
Sbjct: 443 FLRSGVNSKDC--------VLLMNPSRKGSTEEFMAQLLEFKPKAIIYISCNVFSQARDL 494

Query: 333 SILST-------THTIERLALFDQFPYTRHMECGVLLV 363
           +            + ++ +  FD +P T+H+E   +L 
Sbjct: 495 ATFERLQRRSSVKYKVKTITGFDFYPQTKHVETVAILE 532


>gi|300023485|ref|YP_003756096.1| (uracil-5)-methyltransferase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525306|gb|ADJ23775.1| (Uracil-5)-methyltransferase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 409

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 129/358 (36%), Gaps = 41/358 (11%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFR-SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           A K D +     A  + ++ +    EP   R RA        + +     + Q+   + I
Sbjct: 85  AWKRDLVVSAFAARGL-DVTVGDLVEPGGKRRRAVLSAERSDNGVAIGFHEAQSHALVAI 143

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A +  +   I   PL+     ++    ++S   ++     R L      
Sbjct: 144 AECPVLDPKIVAAIPALKTLIA--PLISKLGARLTVTATKSGLDVLLDGIERKLTPD--- 198

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR-----QIENSFT 188
               +R  L +    +QL       ++ +  D V E L      L +           F 
Sbjct: 199 ----VRSRLASEASALQLA------RLAIGNDIVVETLPPF---LTFATADVVLSPGCFV 245

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q  A     M+  +LAA  G    + +L+CG G F+  LA     VLA +  +P++ A  
Sbjct: 246 QAVAEAETEMVRRILAA-VGKVKSVADLFCGVGAFTFPLAARAK-VLAFDGNQPAIAALN 303

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
              AA     +K +    ++  +      E N              I  DPPR+G +   
Sbjct: 304 A--AAKKATGLKPITARVRDLFREPLSPLELNEH----------DAIVFDPPRAGAEAQA 351

Query: 309 VGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             + +     ++  SCNP +L RD   L    + IE +   DQF Y+ H+E   +  R
Sbjct: 352 QRLARSKVKTVVAASCNPATLARDARHLVDGGYKIESVTPIDQFVYSAHVEVVAVFRR 409


>gi|332296500|ref|YP_004438423.1| (Uracil-5)-methyltransferase [Thermodesulfobium narugense DSM
           14796]
 gi|332179603|gb|AEE15292.1| (Uracil-5)-methyltransferase [Thermodesulfobium narugense DSM
           14796]
          Length = 413

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/365 (18%), Positives = 138/365 (37%), Gaps = 37/365 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR----SEPIHYRMRAEFHIWHDGDDLYHIM 62
              YE Q+  K   + + +       +++           YR + E+   +   +L +  
Sbjct: 79  TIDYEYQIELKKGIIEEGLFQTIRKQIKLGSFYKAKNIYGYRTKIEYRFENTNSNLNYAF 138

Query: 63  FDQQTKERMRIDY-FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           + + TK+ + ++         +N +   ++  I    + +  L +I +  + +   +  +
Sbjct: 139 YKRGTKDLVILENGCKLIDDRVNYIAYSLLDYITSLDIDKRALDKIVFRNNTNGLVLGII 198

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
                 D         L            L+     ++    ++++++ L        Y 
Sbjct: 199 YLSNKSDILTIPKIENLAG----------LVIDGANSRQIFGQEFLEQDLLGTKIKYGY- 247

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
              + F Q N  +   +LE ++         +++LY G G+  L L    D+V+ +E  +
Sbjct: 248 ---DCFFQNNIELFSKVLE-IIRNEINSARKIVDLYSGVGSIGLSLRDLADKVVLIESFR 303

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S   +  NI A    NV  +  +S+  ++ + +E                  + +DPPR
Sbjct: 304 NSNLYSIKNIKALGAKNVVPILSNSETISKDILQE---------------SDVVILDPPR 348

Query: 302 SGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
            G     +  +       I Y+SCNP +L RDLS L   + ++++  FD FP T H E  
Sbjct: 349 DGAKKILLDKLLKNLPKKICYLSCNPITLGRDLSFLLKKYDLKKIYGFDFFPNTVHAEVL 408

Query: 360 VLLVR 364
             L R
Sbjct: 409 AFLER 413


>gi|298346906|ref|YP_003719593.1| TrmA family tRNA (uracil-5-)-methyltransferase [Mobiluncus curtisii
           ATCC 43063]
 gi|298236967|gb|ADI68099.1| TrmA family tRNA (uracil-5-)-methyltransferase [Mobiluncus curtisii
           ATCC 43063]
          Length = 504

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 139/385 (36%), Gaps = 78/385 (20%)

Query: 10  YEQQLAEKVDRLR---------QMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGD 56
           Y  QL  K D +R         +++           ++   SEP   R R  F +   G 
Sbjct: 87  YPAQLRWKRDVVRDAIRRNGSSELLAELDQAHPGWEVESSGSEPG--RTRVSFTVCEGGG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                M++        +  F    LL+  L       + L+   R   F           
Sbjct: 145 L---GMYEAAAHNVHTVRSFP---LLVPEL-------VDLDLFRRHWEFTPG-------- 183

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDERLT 172
                               RLR    +    +  +   +   + +D +     V E + 
Sbjct: 184 -------------------TRLRVIAPSSSAPVLFV---DGQTLSVDGEPTTSRVRETVH 221

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
           V   T  YR    SF Q +      +   +  A   I+G +  ELY G+G FSL LA+  
Sbjct: 222 VDDLTFTYRIFSGSFWQTDRRAPAILAAALRDALGQIEGFEAWELYSGSGLFSLFLAQGL 281

Query: 232 D---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               R+  VE   P+ ++A YN+A    + V++ R      +  + R      +      
Sbjct: 282 GAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRRGD---VSPQLLRSLPMGEM------ 332

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYI-SCNPDSLCRDLSILST-THTIERLA 345
             +   +  DPPR GL  A    + A +P ++ + SC+P S  RDL  +    + ++   
Sbjct: 333 VSQGTLVVADPPRLGLGKAVARAICAQHPDLVALFSCDPVSCARDLETMRQLGYRVKTWR 392

Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370
           +FD FPYT H+E   LL +     H
Sbjct: 393 VFDLFPYTSHVETVALLSKLDVEKH 417


>gi|84514895|ref|ZP_01002258.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Loktanella
           vestfoldensis SKA53]
 gi|84511054|gb|EAQ07508.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Loktanella
           vestfoldensis SKA53]
          Length = 400

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 131/356 (36%), Gaps = 36/356 (10%)

Query: 16  EKVDRLRQMMLAFQV-PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            K D + + + A  + P L    + P   R RA+F               + +   + + 
Sbjct: 75  WKQDIVARALAAHGLHPVLHAIATSPTQSRRRAKFAGRRTKKGALVGFHGRASHTLIDVP 134

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
                +  + A M  +     L    + ++     +T  +  A V +   + L    R  
Sbjct: 135 DCQLVTPALLATMPALQELTILAASRKGEV--DLTVTETALGADVLVGTDKDLTPDLRVV 192

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLTVAGRTLIYRQIENSFTQPN 191
              L +A     + +  +   ++  + +   D+++   ++T             +F Q  
Sbjct: 193 LAALANA-----HGLSRLVWNDEPVVTINPPDQNFGGTKVTP---------PPGAFLQAT 238

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +L  V A T+G    +++L+ G G F+L LA     V AVE      E A    
Sbjct: 239 KQGEAALLAAVDAITQGAS-RIVDLFAGCGTFTLPLAARA-EVHAVES-----ETAMLAA 291

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                   + +R  + E     RR  E + +        ++    +DPPR+G +     +
Sbjct: 292 LDRGWRAGRTLRKVTTEARDLFRRPLEPDEIA-------KYDAAVIDPPRAGAEAQIDAL 344

Query: 312 VQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            ++    I+ +SCNP +  RD  +L      +  + + DQF ++ H+E      RK
Sbjct: 345 ARSDIKTIVMVSCNPVTFARDAKVLVDAGFAMPWVQVVDQFRWSPHVEIVSPFTRK 400


>gi|62289423|ref|YP_221216.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|82699350|ref|YP_413924.1| SAM-binding domain-containing protein [Brucella melitensis biovar
           Abortus 2308]
 gi|189023674|ref|YP_001934442.1| SAM (and some other nucleotide) binding motif [Brucella abortus
           S19]
 gi|237814911|ref|ZP_04593909.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella abortus str.
           2308 A]
 gi|254688736|ref|ZP_05151990.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           6 str. 870]
 gi|254696864|ref|ZP_05158692.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           2 str. 86/8/59]
 gi|254729769|ref|ZP_05188347.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           4 str. 292]
 gi|256256983|ref|ZP_05462519.1| SAM (and some other nucleotide) binding motif [Brucella abortus bv.
           9 str. C68]
 gi|260545825|ref|ZP_05821566.1| SAM binding domain-containing protein [Brucella abortus NCTC 8038]
 gi|260754215|ref|ZP_05866563.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 6 str.
           870]
 gi|260757435|ref|ZP_05869783.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 4 str.
           292]
 gi|260761260|ref|ZP_05873603.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883240|ref|ZP_05894854.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|297247836|ref|ZP_06931554.1| TrmA family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
 gi|62195555|gb|AAX73855.1| RNA methyltransferase hypothetical, TrmA family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615451|emb|CAJ10420.1| SAM (and some other nucleotide) binding motif [Brucella melitensis
           biovar Abortus 2308]
 gi|189019246|gb|ACD71968.1| SAM (and some other nucleotide) binding motif [Brucella abortus
           S19]
 gi|237789748|gb|EEP63958.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella abortus str.
           2308 A]
 gi|260097232|gb|EEW81107.1| SAM binding domain-containing protein [Brucella abortus NCTC 8038]
 gi|260667753|gb|EEX54693.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 4 str.
           292]
 gi|260671692|gb|EEX58513.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674323|gb|EEX61144.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 6 str.
           870]
 gi|260872768|gb|EEX79837.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|297175005|gb|EFH34352.1| TrmA family RNA methyltransferase [Brucella abortus bv. 5 str.
           B3196]
          Length = 415

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 131/353 (37%), Gaps = 32/353 (9%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +      V    +    P H R RA F        +       Q+ E + I
Sbjct: 88  WKRELVVGALKGRGIDVEVAPLVACNP-HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++     L        F+++   ++S   +      +L D+    
Sbjct: 147 VECPVTVPEIIARLDDLREVGALLAPGSGP-FKLEATLTESGLDLAASGCGKLNDEQ--- 202

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                R AL A   +      +++ +I ++     ++  +    +        F Q  A 
Sbjct: 203 -----RRALTALVIKKDFARLSHEGEIIVE----PKKPLIHFGKVPVPVPPGCFLQATAE 253

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M   VLA   G    + +L+CG G F+L +A     V AVE    ++ A       
Sbjct: 254 AEETMAALVLA-HLGKARRVADLFCGVGTFALRIAEKSA-VHAVENDAAALAALDR---- 307

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                V+ V+             R+  R   +      +  +  DPPR+G ++  + + +
Sbjct: 308 ----GVRHVQG----LKPVSIERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALELAK 359

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L +
Sbjct: 360 SKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|320093829|ref|ZP_08025674.1| hypothetical protein HMPREF9005_0286 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979262|gb|EFW10760.1| hypothetical protein HMPREF9005_0286 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 445

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 113/330 (34%), Gaps = 53/330 (16%)

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
           H R R EF I  DG    H+    + K  + +D     +  I  L   +         + 
Sbjct: 161 HRRNRIEFVIGTDGAPGMHVY---RGKRLIPLDSMPLAAPAIAGLG--LFDGDSPWKRVW 215

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           A   ++  L+     A V         DA R  +  L                       
Sbjct: 216 APGERVRALSPTPGSAYVVCASGVYGADARRTGSAALA---------------------- 253

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
                    + + G   +Y      F Q +      + E VL A +   G  +LELY G 
Sbjct: 254 -------WPVEIGGEEHVYGVRPTGFWQTHVRGAQVLTEEVLDAARAETGGAVLELYSGA 306

Query: 221 GNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           G F+  LAR      R+ ++E  + +V  A  N+A        I  + +    +      
Sbjct: 307 GLFTAPLARAVGEGGRLASLEGDEGAVADAAENLAPFPWAQTFIGGIDAHGVAEL----- 361

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL 335
                            +  DPPR+G        + A   P ++ +SC+P +  RDL  L
Sbjct: 362 -------AGGLGRAPDVVVADPPRAGAGRQVCEAMAALGAPRLVLVSCDPAAGARDLRAL 414

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +   + +E L  +D FP+T H+E    L R
Sbjct: 415 AGAGYRLESLRAWDLFPHTHHVEIVAALTR 444


>gi|144898320|emb|CAM75184.1| RNA SAM-dependent methyltransferase, TrmA family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 441

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/325 (20%), Positives = 118/325 (36%), Gaps = 28/325 (8%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R RA F               + +   + +D  +     + A++  +   I  E +  ++
Sbjct: 141 RRRATFAFHRRKGSTVFGFNARASHTIIDLDDCLLLDRALAAIIAPLRH-ILTETVPDSE 199

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
              +    +     I+     R LD   RE      D+    +   +  G      I   
Sbjct: 200 DGDVTVALTAGGLDILVEADAR-LDLFDREKLAAFADSHDLARLSWRRPGAGFIEPISRR 258

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           R        V    +       +F QP        +  ++    G    + +LYCG G+F
Sbjct: 259 RGA-----MVHFAGIAVEPPPGNFLQP-TEAGEKAIAQLVCTGIGKVKAVADLYCGCGSF 312

Query: 224 SLVLARHFDRVLAVEIAKPSVEA--ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +  LA     V AVE  +  + A  A  N+A   +                    R+  R
Sbjct: 313 TFPLAASGAAVHAVEGDEAPIRALEAAANMAGLKITT----------------ETRDLAR 356

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCNPDSLCRDLSIL-STTH 339
              +     +++ +  DPPR+G       + QA P I+  +SCNP +L RDL IL    +
Sbjct: 357 RPLLPQELKKYQAVVFDPPRAGAQSQAEYLAQAAPAIVVAVSCNPATLARDLQILVKGGY 416

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +E +   DQFP++ H+E   +L +
Sbjct: 417 QVESITPIDQFPHSAHLEAVAVLRK 441


>gi|94985877|ref|YP_605241.1| (Uracil-5)-methyltransferase [Deinococcus geothermalis DSM 11300]
 gi|94556158|gb|ABF46072.1| (Uracil-5)-methyltransferase [Deinococcus geothermalis DSM 11300]
          Length = 410

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 129/378 (34%), Gaps = 60/378 (15%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           L    Y  QL  K   + + +             +      HYR  A++ +   G     
Sbjct: 75  LAHAAYPAQLVYKRGFVEEALARIAKLRHPVAPTLPSPHEWHYRNTAQYLVTPRG----L 130

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA--KLFQIDYLTSQSDQAI 118
              +++ ++ + +        L+ A +  +M  +  E L  A    F+   LT +   A+
Sbjct: 131 AYRERRGRDPLVVGR----DPLVMAPIQAVMDRLDPERLNPATEVAFRASRLTGEVVAAL 186

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN--------KTKICLDRDYVDER 170
           +             E    LR + H     +  +  A           ++      + E+
Sbjct: 187 I----------GAGEPRHFLRASDHLLDAGVVGVSLAEPAGRRFGAGVRLIAGEAEIQEQ 236

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR 229
                           F Q N       L ++ AA     G   ++LY G+G     LA 
Sbjct: 237 FGQVRVG----ITATGFAQVNPEAA--GLAYIHAAELAGSGLHAVDLYGGSGAIGRHLAP 290

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           HF RV  ++ A  ++   R  +A +   NV      +    +                  
Sbjct: 291 HFARVTVLDTAAEALVRGRQAVAVSGERNVSYRSGDAARLGE------------------ 332

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLAL 346
                I VDPPR+GLD+     + A     ++Y+SC+P +  RD+  L+     +  +  
Sbjct: 333 LSTDVIVVDPPRAGLDEGARDHIHASTADRLVYVSCDPATWARDVGDLTRRGWRLGEVTP 392

Query: 347 FDQFPYTRHMECGVLLVR 364
            D +P T H+E   +L R
Sbjct: 393 HDFYPQTSHVEVVSVLER 410


>gi|189189148|ref|XP_001930913.1| tRNA (uracil-5-)-methyltransferase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187972519|gb|EDU40018.1| tRNA (uracil-5-)-methyltransferase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 559

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 142/417 (34%), Gaps = 82/417 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ--------IFRSEPIHYRMRAEFHI-- 51
                +  Y+ QL  K   + +    F     +        I       YR +   H   
Sbjct: 173 GCQFQMLPYDFQLQHKRSIVEKAYKNFSNLPPEPIPTIGDTIGSPLQYGYRTKLTPHFDG 232

Query: 52  -----WHDGDDLYH---------IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
                  DG +                + T+  + I+    G+  + A        +   
Sbjct: 233 PPDARRSDGRNGIKRTFKELPPIGFMKKGTRITIDIEDCPIGTDAVRAGNKRERNRVADT 292

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA--LHARKYQIQLIGRA 155
                K   +    S       T +     D +  E +  + +    H           A
Sbjct: 293 LSTYHKGATLLLREST------TRVPKADYDVSKEEDSDAIVEDRGDHIHIKTCTTDSNA 346

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQ- 210
             T      +YVD           +     SF Q N  I      ++ E +L +T G + 
Sbjct: 347 KTT------EYVD--------DFQFVNPAGSFFQNNNSILPVFTQYIREHILPSTPGHKI 392

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKE 268
             L++ Y G+G F++ L+  F   L ++I+  S+E+A  N   N++  ++ + +   +  
Sbjct: 393 THLIDAYSGSGLFTITLSSLFKSSLGIDISSSSIESASTNAKLNNLPESSTRFIAADAAR 452

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP-HILYISCNPD 326
              ++    E                + +DPPR G D++ +  +VQ  P  ++Y+SCN  
Sbjct: 453 LFASIESPAE-------------ETVVMLDPPRKGCDESFLRQLVQYGPARVVYVSCNVH 499

Query: 327 SLCRDLSILSTT--------------HTIERLALFDQFPYTRHMECGVLLVRKPSGW 369
           +  RD+ +L                 + IE L  FD FP T H+E   +L RK  G 
Sbjct: 500 TQARDIGVLVGGMKGVDGGFGKGEGCYEIESLRGFDFFPQTGHVEGVAVLSRKAGGQ 556


>gi|150395715|ref|YP_001326182.1| (Uracil-5)-methyltransferase [Sinorhizobium medicae WSM419]
 gi|150027230|gb|ABR59347.1| (Uracil-5)-methyltransferase [Sinorhizobium medicae WSM419]
          Length = 420

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 121/325 (37%), Gaps = 33/325 (10%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R RA F       +L       Q+   + I      S  I   +  + A  ++   + + 
Sbjct: 125 RRRAVFTARRTEKELLLGYNQMQSHHIVSIGECPITSPGI---VSRLAAIRKIAAAMASS 181

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
                   +++D  +        + D +R   +   DA+   +            ++ L+
Sbjct: 182 AEPFRITVTETDTGLDLAFDGLKVGDKYRRATV---DAVLGERGIA---------RVSLN 229

Query: 164 RDYVDERLTVAGR--TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
            + V E +  A     ++      +FTQ        M   VL    G    + +L+ G G
Sbjct: 230 GEIVVEPVKPAIDLGGVVVSPPPGAFTQATRPAEEAMARLVLG-HVGKAKRVADLFAGIG 288

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F+L +AR   RV AVE    +++A            +     +++        +R+  R
Sbjct: 289 TFALRIARTA-RVHAVEGDDRALKA------------LDFAARNTQGLKPVTVEKRDLFR 335

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTH 339
              +      F  +  DPPR+G +     + +     I  +SCNP +L RDLSIL +  +
Sbjct: 336 RPMMAQELKVFDAVVFDPPRAGAETQCHELARSGVKKIAAVSCNPVTLARDLSILTAAGY 395

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I  +   DQF ++ H+E    L +
Sbjct: 396 RITDVTPIDQFLWSAHVETVATLEK 420


>gi|325066757|ref|ZP_08125430.1| 23S rRNA methyluridine methyltransferase [Actinomyces oris K20]
          Length = 317

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/321 (21%), Positives = 121/321 (37%), Gaps = 41/321 (12%)

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI-----YH 124
            + +        ++  L+ ++       P  R +L  +    S  D  +V  +     Y 
Sbjct: 11  PLHVPAIEAALPVLADLITDLGLHPYDVPSRRGELKYVLVTASPDDDLMVRFVLRSRRYL 70

Query: 125 RLLDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG------ 175
             L  A  +   RL     A    +   Q +    +  +  + D +  RL++        
Sbjct: 71  ERLRAAVPDLHRRLPQLAVAAINIQSVHQAVIEGPEEIVLTEEDRLLMRLSLPSPELGGQ 130

Query: 176 -------RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVL 227
                    L       SF Q N  +   +        +  +   + +L+CG G F+L L
Sbjct: 131 AGRRAESVELPLYLPTRSFFQTNTAVAEALYATARDWAEEAEPARVWDLFCGVGGFALAL 190

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDI 285
           A    RVL VE++  +++ AR       ++   V+     ++    A R +R        
Sbjct: 191 AAPGRRVLGVEVSASAIDGARAAADLMGLDPALVRFEAGDARVLDPAARAQR-------- 242

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIER 343
                    + V+PPR G+ +     ++A     +LY SCNP +L  DL+ L +   + R
Sbjct: 243 ------PDLLVVNPPRRGIGEQLATRIEASGVERVLYSSCNPRTLAADLAHLPSM-RVVR 295

Query: 344 LALFDQFPYTRHMECGVLLVR 364
             LFD FP+T H E  V LVR
Sbjct: 296 SRLFDMFPHTEHAEVLVELVR 316


>gi|225558321|gb|EEH06605.1| tRNA methyltransferase [Ajellomyces capsulatus G186AR]
          Length = 562

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 138/422 (32%), Gaps = 86/422 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEPIHYRMRAEF------ 49
              L +  Y+ QL  K   L +    F     ++        + P+ Y  R +       
Sbjct: 154 GCQLQMLPYKDQLKHKRRILEKAYTNFSGLLPELIPAIRDTMASPLQYGYRTKLTPHFPM 213

Query: 50  --HIWH------DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
              I        + +        +  +  + I+    G+ ++   M             R
Sbjct: 214 PTRIRRGSADGEESEMPPIGFMLKGRRTVIDIEDCPLGTDIVRLGMKCE----------R 263

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            ++ +  +  S+    ++     R   D  R        A    +  +       +    
Sbjct: 264 KRVAKSLHTYSKGATLLLRESTTRYYKDPGRRSPNGTERASSEERQPVHDEPVIRRE--- 320

Query: 162 LDRDYVDERLTV---------AGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKG 208
              DY++E+  +               ++     F Q N  I      ++ E  L     
Sbjct: 321 -YPDYIEEKRCITDQNSTSIEYVDNYKFQNKAGQFFQNNNSILAPFTQYIRENALLPPST 379

Query: 209 IQGD---------------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
                              LL+ Y G+G F++ L+  F   L ++I+  S+EAAR N  A
Sbjct: 380 SSSSPSSSSTTQRTSKLKYLLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARA 439

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + N                        KD+     +   + +DPPR G D+  +  + 
Sbjct: 440 NKLANTGF------------AAADAAAIFKDVPYPPDK-TLLIIDPPRKGCDNNFLQQLL 486

Query: 314 AYP--HILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLL 362
           +Y    ++Y+SCN  +  RD+ +L            + IE +  FD FP T H+E   +L
Sbjct: 487 SYGPARVVYVSCNVHTQARDVGVLVQGGNFKGEEVRYEIESIKGFDFFPQTGHVEGVAIL 546

Query: 363 VR 364
            +
Sbjct: 547 NK 548


>gi|255722035|ref|XP_002545952.1| hypothetical protein CTRG_00733 [Candida tropicalis MYA-3404]
 gi|240136441|gb|EER35994.1| hypothetical protein CTRG_00733 [Candida tropicalis MYA-3404]
          Length = 551

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 138/390 (35%), Gaps = 75/390 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP-------NLQIFRSEP--IHYRMRAEFHIW 52
              L +  YE QL  K   + +    F          +       P    YR +   H  
Sbjct: 209 GCQLQMLTYEDQLNFKKSIIMKAYRYFYPEIFNQLGNDFGTVSGSPLQYSYRTKLTPHFT 268

Query: 53  HDGDDLYHIMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
                   + F+    + +  +      +  IN  + ++                     
Sbjct: 269 VSNGINTKLGFETVNHQGKFDMKQCPIATPEINDKLSQIRDEY----------------- 311

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
                    L   R         +IR+         Q+ L G+   T             
Sbjct: 312 ---------LGQSRPYSQVMLRQSIRINQD-TGEFIQVALEGQYKVT------------- 348

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLA 228
           T      +++   N F Q N  I  ++L+++   +        ++++ YCG G F + L+
Sbjct: 349 TEKINEFLFQFDSNCFFQNNNSILPNVLDYITYHINLKGKPIDNIIDTYCGVGFFGIALS 408

Query: 229 RHFD---RVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRREREFNRLK 283
             F    ++  +EI+  S++ A +N+  N++  + +K ++  +     +M +  EF +  
Sbjct: 409 NSFQENTKIFGIEISNISIKYANHNVKINNLNKDKIKFIQGDA----SSMFKNEEFIK-- 462

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST---- 337
                S +   + +DP R G +++ +  +  +    I+Y+SCN  +  RDL+        
Sbjct: 463 --SGISGKNSVVIIDPSRKGSNESFMKQLLEFEPEIIIYVSCNVFTQARDLATFDKLQQN 520

Query: 338 ---THTIERLALFDQFPYTRHMECGVLLVR 364
               + +  +  FD FP T+H+E   ++ +
Sbjct: 521 SNVKYKVRDIMGFDFFPQTKHVESIAIIEK 550


>gi|306842277|ref|ZP_07474939.1| 23S ribosomal RNA uracil-5-methyltransferase [Brucella sp. BO2]
 gi|306287585|gb|EFM59036.1| 23S ribosomal RNA uracil-5-methyltransferase [Brucella sp. BO2]
          Length = 415

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 130/353 (36%), Gaps = 32/353 (9%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +      V    +    P H R RA F        +       Q+ E + I
Sbjct: 88  WKRELVVGALKGRGIDVEVAPLVACSP-HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++     L        F++    ++S   +      +L DD    
Sbjct: 147 VECPVTVPEIIARLDDLREVGALLAPGSGP-FKLAATLTESGLDLAASGCGKLNDDQ--- 202

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                R AL A   +      +++ +I ++     ++  +    +        F Q  A 
Sbjct: 203 -----RRALTALVIKKDFARLSHEGEIIVE----PKKPLIHFGKVPVPVPPGCFLQATAE 253

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M   VLA   G    + +L+CG G F+L +A     V AVE    ++ A       
Sbjct: 254 AEETMAALVLA-HLGKARRVADLFCGVGTFALRIAEKSA-VHAVENDAAALAALDR---- 307

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                V+ V+             R+  R   +      +  +  DPPR+G ++  + + +
Sbjct: 308 ----GVRHVQG----LKPVSIERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALELAK 359

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L +
Sbjct: 360 SKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|153007894|ref|YP_001369109.1| (Uracil-5)-methyltransferase [Ochrobactrum anthropi ATCC 49188]
 gi|151559782|gb|ABS13280.1| (Uracil-5)-methyltransferase [Ochrobactrum anthropi ATCC 49188]
          Length = 413

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 130/354 (36%), Gaps = 32/354 (9%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +           +   +P   R RA F        +        + E + I
Sbjct: 88  WKRELVVSALKGRGIDTEVAPLVACQPRT-RRRAVFAARKTEKGVLLGFNRHLSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++   +       +K F++    ++S   +      +L D+    
Sbjct: 147 VECAVTVPEIIARLDDLRE-VGALIAPGSKPFKLAATQTESGLDLAASGCGKLSDEQ--- 202

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                R AL A   +      +++ +I ++     ++  +    +        F Q  A 
Sbjct: 203 -----RRALTALVMKKGFARLSHEGEIIVE----PKKPLIHFGKVPVPVPPGCFLQATAD 253

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M+  VL+   G    + +L+CG G F+L +A     V AVE    ++         
Sbjct: 254 AEEAMVSLVLS-HLGKAKRVADLFCGVGTFALRIAEKSA-VHAVENDALALA-----ALD 306

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             V +V+                R+  R   +      +  +  DPPR+G ++  + + +
Sbjct: 307 RGVRHVQG-------LKPVSVERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALELAK 359

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
                ++ +SCNP +L RDL+IL    + + R+   DQF ++ H+E    LV+K
Sbjct: 360 SKVEKVVAVSCNPVTLARDLAILVKGGYRVTRVTPIDQFLWSPHVEAVATLVKK 413


>gi|84496220|ref|ZP_00995074.1| putative RNA methyltransferase [Janibacter sp. HTCC2649]
 gi|84382988|gb|EAP98869.1| putative RNA methyltransferase [Janibacter sp. HTCC2649]
          Length = 434

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 118/342 (34%), Gaps = 67/342 (19%)

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           + +R R EF +  DG      M   ++ + + ID  +  S  +                 
Sbjct: 139 LRWRSRTEFAVGADG---RAGMRRHRSHDLLAIDDCLIASERV----------------- 178

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
                                +   +L   W     +  D +   K    ++   +   +
Sbjct: 179 ---------------------VGTGVLQGHW--VGEKAVDVVAPSKGAAAVVRIPSDESV 215

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCG 219
                 V E +     +  +      F Q + G     ++ V+   +   G+  L+LY G
Sbjct: 216 A---PVVTETVAAQSLSRDFDVSARGFWQVHPGAAATFVDAVIEGLRPQPGERGLDLYAG 272

Query: 220 NGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT------ 270
            G F+  LA+       V+AVE    +V  AR N+       V+ V+             
Sbjct: 273 VGVFTSALAQAVGERGQVIAVESDAVAVAQARLNVEM--TPWVQYVQGRVDHVFGVESTG 330

Query: 271 -----QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISC 323
                +   + R   R  +  +       + +DPPR+G   A +  V   A   + Y++C
Sbjct: 331 RVAGSRKGGKRRAAPRRPNSAMPPT-ADVVVLDPPRTGAGKAVITAVVALAPRALAYVAC 389

Query: 324 NPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +P +L RD + L    + +  L  FD FP T H+EC  +  R
Sbjct: 390 DPAALARDTAYLMERGYALTSLRAFDAFPMTHHVECVAIFER 431


>gi|294155861|ref|YP_003560245.1| hypothetical RNA methyltransferase [Mycoplasma crocodyli MP145]
 gi|291600330|gb|ADE19826.1| hypothetical RNA methyltransferase [Mycoplasma crocodyli MP145]
          Length = 435

 Score =  159 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 61/369 (16%), Positives = 149/369 (40%), Gaps = 30/369 (8%)

Query: 5   LLIDQYEQQLAEKVDRLRQMML-AFQVPNLQIFRSEPIHY----RMRAEFHIWHDGDDLY 59
           LL   Y +Q   K + L   +  + +  +      E  H+    R +    +    + + 
Sbjct: 85  LLGIDYNEQYNFKKNLLETRLKWSLKFNDFVFNGLEKSHFETTTRNKIVVPLIVKNNLIS 144

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
             M   ++ + + + Y    S  IN  + + +  +    +    + +I    ++ ++  V
Sbjct: 145 LAMHAYKSNDLVDVKYISLASKNINDFLNKSIIFLNQNKI--TYISKIMVRENKYNELQV 202

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
                +  ++  +   I         + Q  ++    K     ++D+      +    + 
Sbjct: 203 IFYNSKESNNINKNTFIEFIKNNKNIR-QFWIVNEDGKLINLHNQDF-----HLELGGMS 256

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVE 238
           ++   NSF Q N     +++       K  +  +++ELYCG G+  ++L+    +++ +E
Sbjct: 257 FKVDCNSFFQTNCDEFSYLINDAKKLIKNNEFKEIIELYCGVGSLGMLLSNKEQKLIGIE 316

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I++ S++ A  N   N++ N    +  + +  + +               + +   I +D
Sbjct: 317 ISESSIKNANQNKEINNLKNTTYYQGDAFDIIKKVN-------------VNLKNNLIILD 363

Query: 299 PPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRH 355
           PPR+GLD   +  +      ++LYISC+  ++ RD+ + +   + +  +  +D F  T H
Sbjct: 364 PPRAGLDKKLINFLAQNEAENVLYISCDLGTMIRDIKLFNELGYELLFIKGYDVFRNTSH 423

Query: 356 MECGVLLVR 364
           +E   L+ +
Sbjct: 424 IEMLSLIHK 432


>gi|262196726|ref|YP_003267935.1| (uracil-5)-methyltransferase [Haliangium ochraceum DSM 14365]
 gi|262080073|gb|ACY16042.1| (Uracil-5)-methyltransferase [Haliangium ochraceum DSM 14365]
          Length = 489

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 125/396 (31%), Gaps = 54/396 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDLYHIMFDQ 65
           Y  QLA K  R+ +      +  +++           YR + ++ I    D L    F  
Sbjct: 109 YPAQLAHKRARVARAFADAGLA-VEVAAPLAAPATTGYRNKGKYVIGTGADGLVLGAFAP 167

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQSDQAI 118
           ++   +           I  +   +   +         E   R  L      +    + +
Sbjct: 168 RSHVVVDTAGCQVLEPAIERVARHLRTALAASRLPVYDERTRRGTLRYAILRSGADGRVL 227

Query: 119 VTLIYHRLLDDAWRECAIRLRDAL---------------HARKYQIQLIGRANKTKICLD 163
           V ++       A       + DAL               H       LI    + +    
Sbjct: 228 VGVVIAGAGAGAGAPAEAEIADALAPLRALDEVAGAVLLHNDTRSGALIDGGERARPLFG 287

Query: 164 RDYVDERL--TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT-----KGIQGD--LL 214
              V ERL       ++       +F Q +      +   V  A       G  GD   L
Sbjct: 288 ASVVIERLDGPGGPGSVAVALGIEAFFQVHRAQARRLYREVATAAARLRGPGADGDRAAL 347

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKP-SVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +LYCG G  +  LA     V+ VE        A           N+      + +F +  
Sbjct: 348 DLYCGVGGVAFALAGDGGHVVGVESNPSAVAAARDAAAGVGAGANIDFALGDAADFGRLS 407

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRD 331
           R                +   + V+PPR+GL        +  A P ++Y+SC P SL RD
Sbjct: 408 R--------------DLQPSLVAVNPPRAGLRPEARDALLAAAPPALVYVSCGPSSLARD 453

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           ++   +  + IER+   D  P T  +E    L R P
Sbjct: 454 VAAFTAAGYEIERVLPVDLMPGTPQIETVATLRRCP 489


>gi|297242735|ref|ZP_06926673.1| SAM-dependent methyltransferase [Gardnerella vaginalis AMD]
 gi|296888946|gb|EFH27680.1| SAM-dependent methyltransferase [Gardnerella vaginalis AMD]
          Length = 478

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 145/410 (35%), Gaps = 64/410 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-------------IHYRMRAE 48
              L+      Q+  K   +        + ++ +  S+               ++R R E
Sbjct: 84  GADLIHVSLPGQIRWKASVIANQFQR--LAHMDVVESDVNVERMPGDEELNGFNWRTRME 141

Query: 49  FHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID 108
                +G      M  +++ +R+ ID     S  + A+   +    R           + 
Sbjct: 142 LVADDEGRLS---MRKRESHDRIAIDTMPLASRAVLAVADSLDLWNRKFEPNSQIRLAVP 198

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
                     V+     LLD      A+ + D L A    ++      + ++ +D D   
Sbjct: 199 EPRVDGLDFGVSGDKAALLDAIGENYALIVNDGLVAGSALLR-----ERVRVAVDGD--- 250

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGN 222
              +   RT  Y      F Q +     H++ +VL   +   G       L +LY G+G 
Sbjct: 251 ---SSRARTFDYDVDARGFWQIHRAAPEHLVNYVLGLVRSALGGRIKNTVLWDLYSGSGL 307

Query: 223 FSLVLARHF------------------------DRVLAVEIAKPSVEAARYNIAANHVNN 258
           F++ LA                            RVL++E A  +V+ AR NI    +  
Sbjct: 308 FTIPLATLANIGGDSSSAVGAIGTTGAFGSAEPARVLSIEGAPIAVKNARRNIGRAGLGR 367

Query: 259 VKIVRMSSKEFTQAMRRER-EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
             +V     + +Q +  +  + ++   I         + +DPPR+G        +     
Sbjct: 368 -DVVEALEGDVSQTLESQVFKASKSSKIVRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGA 426

Query: 318 --ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
             ++Y++C+P SL RD+       + ++ L  FD +P T H+E  VL+ R
Sbjct: 427 RSVVYVACDPTSLARDVGTFRELGYNVQSLRAFDIYPNTHHVESVVLMSR 476


>gi|313618460|gb|EFR90466.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
           S4-378]
          Length = 129

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 14/137 (10%)

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V  ++I   S+E A+ N   N + NV      +++      +E             
Sbjct: 2   KVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVKE------------G 49

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALF 347
           +R   + VDPPRSG D   +  +       ++Y+SCNP +L RDL++L+  + I  +   
Sbjct: 50  FRPDAVIVDPPRSGCDQGLIKSLLQVEAKQLVYVSCNPSTLARDLALLAKKYQIRYMQPV 109

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP T H+E  VL+ R
Sbjct: 110 DMFPQTAHVETVVLMSR 126


>gi|254718616|ref|ZP_05180427.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella sp.
           83/13]
 gi|265983593|ref|ZP_06096328.1| hypothetical protein BAKG_01706 [Brucella sp. 83/13]
 gi|306839866|ref|ZP_07472664.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella sp.
           NF 2653]
 gi|264662185|gb|EEZ32446.1| hypothetical protein BAKG_01706 [Brucella sp. 83/13]
 gi|306405052|gb|EFM61333.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella sp.
           NF 2653]
          Length = 415

 Score =  159 bits (401), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 132/353 (37%), Gaps = 32/353 (9%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +      V    +    P H R RA F        +       Q+ E + I
Sbjct: 88  WKRELVVGALKGRGIDVEVAPLVACSP-HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++     L     ++ F++    ++S   +      +L DD    
Sbjct: 147 VECPVTVPEIIARLDDLREVGALLAP-GSRPFKLAATLTESGLDLAASGCGKLNDDQ--- 202

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                R AL A   +      +++ +I ++     ++  +    +        F Q  A 
Sbjct: 203 -----RRALTALVIKKDFARLSHEGEIIVE----PKKPLIHFGKVPVPVPPGCFLQATAE 253

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M   VLA   G    + +L+CG G F+L +A     V AVE    ++ A       
Sbjct: 254 AEETMAALVLA-HLGKARRVADLFCGVGTFALRIAEKSA-VHAVENDAAALAALDR---- 307

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                V+ V+             R+  R   +      +  +  DPPR+G ++  + + +
Sbjct: 308 ----GVRHVQG----LKPVSIERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALELAR 359

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L +
Sbjct: 360 SKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|300741361|ref|ZP_07071382.1| putative tRNA (Uracil-5-)-methyltransferase [Rothia dentocariosa
           M567]
 gi|300380546|gb|EFJ77108.1| putative tRNA (Uracil-5-)-methyltransferase [Rothia dentocariosa
           M567]
          Length = 544

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 139/411 (33%), Gaps = 62/411 (15%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIH--------YRMRAEFHIWH--D 54
           +Q   K + +R  +       L+       I  S P          +R R  +      +
Sbjct: 129 EQRRYKAEIVRTQLHRLGGIPLESPLLTNLIVESMPNRDLVEGDLSWRSRIRYTTAKSIE 188

Query: 55  GDDLY--HIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLL--RAKLFQI 107
               Y    M+   + + + +  F   +  +  L +    +     LE  L  R ++   
Sbjct: 189 DGTTYWRIGMYPYHSSQPVPVVDFPLVARELRDLELHKLNLRGVRELEATLSSRGRILLQ 248

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRL--------------RDALHARKYQIQLIG 153
             +  + +   V     R     W E A R                     +        
Sbjct: 249 FMVDPRFETTHVAKEIERQCIQLWGELAKRKISLFFTPYSGSKAKPSKRSGQPSVHSPYR 308

Query: 154 RANKTKICLDRD--YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           R  +  I L      V E ++   R   Y+     F Q +      ++  +L   +   G
Sbjct: 309 RVRQGDILLGGGLRSVTEEVSFGPRRFSYQVSAGGFWQIHRCAPSTLMGTMLTMLRPTLG 368

Query: 212 D-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANH--------VNNV 259
           +  L+LY G G F+  LA        V++VE +  +   AR N A +            V
Sbjct: 369 ECALDLYAGAGLFTAALADAVGSEGTVISVEGSPVTHRDARSNFAPDGPSRSDNSKETRV 428

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317
           +++R    +  Q ++      ++            + +DP R G +   +  +       
Sbjct: 429 EVIRGDVAQSLQDLKAAHSLGQIP-------TPDAVVLDPSREGANRKVLERLNELKPGR 481

Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           ILY++C+P +L RD +IL      + ++  FD +P T H+E   L  R P+
Sbjct: 482 ILYVACDPAALGRDTAILRELGWDLVQVRAFDMYPNTHHVETLALFHRAPA 532


>gi|311113443|ref|YP_003984665.1| methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310944937|gb|ADP41231.1| methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 544

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 139/411 (33%), Gaps = 62/411 (15%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIH--------YRMRAEFHIWH--D 54
           +Q   K + +R  +       L+       I  S P          +R R  +      +
Sbjct: 129 EQRRYKAEIVRTQLHRLGGIPLESPLLTNLIVESMPNRDLVEGDLSWRSRIRYTTAKSIE 188

Query: 55  GDDLY--HIMFDQQTKERMRIDYFMPGSLLINALMIE---MMATIRLEPLL--RAKLFQI 107
               Y    M+   + + + +  F   +  +  L +    +     LE  L  R ++   
Sbjct: 189 DGTTYWRIGMYPYHSSQPVPVVDFPLVARELRDLELHKLNLRGVRELEATLSSRGRILLQ 248

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRL--------------RDALHARKYQIQLIG 153
             +  + +   V     R     W E A R                     +        
Sbjct: 249 FMVDPRFETTHVAKEIERQCIQLWGELAKRKISLFFTPYSGSKAKPSKRSGQPSVHSPYR 308

Query: 154 RANKTKICLDRD--YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           R  +  I L      V E ++   R   Y+     F Q +      ++  +L   +   G
Sbjct: 309 RVRQGDILLGGGLRSVTEEVSFGPRRFSYQVSAGGFWQIHRCAPSTLMGTMLTMLRPTLG 368

Query: 212 D-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANH--------VNNV 259
           +  L+LY G G F+  LA        V++VE +  +   AR N A +            V
Sbjct: 369 ECALDLYAGAGLFTAALADAVGSEGTVISVEGSPVTHRDARSNFAPDGPSRSDNSKETRV 428

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPH 317
           +++R    +  Q ++      ++            + +DP R G +   +  +       
Sbjct: 429 EVIRGDVAQSLQDLKAAHSLGQIP-------TPDAVVLDPSREGANRKVLERLNELKPGR 481

Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPS 367
           ILY++C+P +L RD +IL      + ++  FD +P T H+E   L  R P+
Sbjct: 482 ILYVACDPAALGRDTAILRELGWDLVQVRAFDMYPNTHHVETLALFHRAPA 532


>gi|255326562|ref|ZP_05367641.1| tram domain protein [Rothia mucilaginosa ATCC 25296]
 gi|255296374|gb|EET75712.1| tram domain protein [Rothia mucilaginosa ATCC 25296]
          Length = 545

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 139/424 (32%), Gaps = 87/424 (20%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIH-------YRMRAEF---HIWHD 54
           +Q   K D +R  +       L+       I    P+        +R R  +    +   
Sbjct: 123 EQRRYKTDIVRTQINRLGGLPLESPLLTNLIVEELPLRDNNEGLSWRTRVRYNVTKVRTQ 182

Query: 55  GDDL------------YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
             D                M   +  + + +  F   +        E+   + LE L   
Sbjct: 183 PGDQKSGGKKSPAVTWRVGMHPYRASQPVPVVDFPLAA-------PELRN-LELEKLNLR 234

Query: 103 KLFQIDYLTSQSDQAIVTLI-------------YHRLLDDAWRECAIRL----------- 138
            + +++   S   + ++  I               +   DAW   A R            
Sbjct: 235 GVREVEATVSSRGRVLLQFIVDPRFSIEEVAKDIEQQAADAWGLLAKRKISLFFTPQSTS 294

Query: 139 ----RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
               +       +            +      V E +T   R   Y+     F Q +   
Sbjct: 295 NGKPKRRRPGSSHTPYRRVPEGDQLLGAGLRSVTEEVTFGSRRFSYQVSAGGFWQIHRAA 354

Query: 195 NVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYN 250
              M+  +L   +  +G+  L+LY G G F+  LA        V+++E +  + + AR N
Sbjct: 355 PSTMVGTMLTMLRPQEGECTLDLYAGAGLFTAALADAVGATGTVVSIEGSPVTHKDARSN 414

Query: 251 IAANHV--------NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            A +            ++++R         ++   EF  +  ID        + +DP R 
Sbjct: 415 FAPDGCSRTENSANTRIEVIRGDVARHLVDLKTALEFGEIPAIDA-------VVLDPSRE 467

Query: 303 GLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECG 359
           G +  T+  + A     ILY++C+P SL RD  IL      + +L  FD +P T H+E  
Sbjct: 468 GANRTTLERLDALDPKRILYVACDPASLGRDTGILRELGWDMVQLRAFDMYPNTHHVESV 527

Query: 360 VLLV 363
            L  
Sbjct: 528 ALFE 531


>gi|254693219|ref|ZP_05155047.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           abortus bv. 3 str. Tulya]
 gi|261213462|ref|ZP_05927743.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915069|gb|EEX81930.1| tRNA (Uracil-5-)-methyltransferase [Brucella abortus bv. 3 str.
           Tulya]
          Length = 415

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 130/353 (36%), Gaps = 32/353 (9%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +      V    +    P H R RA F        +       Q+ E + I
Sbjct: 88  WKRELVVGALKGRGIDVEVAPLVACNP-HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++     L        F++    ++S   +      +L D+    
Sbjct: 147 VECPVTVPEIIARLDDLREVGALLAPGSGP-FKLAATLTESGLDLAASGCGKLNDEQ--- 202

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                R AL A   +      +++ +I ++     ++  +    +        F Q  A 
Sbjct: 203 -----RRALTALVIKKNFARLSHEGEIIVE----PKKPLIHFGKVPVPVPPGCFLQATAE 253

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M   VLA   G    + +L+CG G F+L +A     V AVE    ++ A       
Sbjct: 254 AEETMAALVLA-HLGKARRVADLFCGVGTFALRIAEKSA-VHAVENDAAALAALDR---- 307

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                V+ V+             R+  R   +      +  +  DPPR+G ++  + + +
Sbjct: 308 ----GVRHVQG----LKPVSIERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALELAK 359

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L +
Sbjct: 360 SKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|257056412|ref|YP_003134244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharomonospora
           viridis DSM 43017]
 gi|256586284|gb|ACU97417.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharomonospora
           viridis DSM 43017]
          Length = 399

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 124/366 (33%), Gaps = 74/366 (20%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDDLYHIMFDQQ 66
             Q   K   + + +      ++ +         + +R R  F    DG+     +   +
Sbjct: 95  PAQRELKARVVEEQLRRLAGLDVPVTVEPLSGGLLRWRTRVRFVADGDGN---AGLRAHR 151

Query: 67  TKERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           +   + +          ++A++    +             +I+       +  V  +  R
Sbjct: 152 SHRVVPLQDCPITVRPAVDAVLPHSWSEGD----------EIEATEDADGEVHVRRLPSR 201

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
                 R+   +LR  +  ++                 RD+              +   +
Sbjct: 202 TR----RQRPEQLRGGIAVQRAA--------------GRDW--------------KLDAH 229

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF---DRVLAVEIAK 241
            F Q +        + V        G    +LY G G F+ VLA       RVLAVE  +
Sbjct: 230 GFWQVHPQAADAFAQVVREWADASPGARAWDLYAGVGLFASVLAEQVGPKGRVLAVESGR 289

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V   R N+A   +  V+      +   +                 +   + + +DPPR
Sbjct: 290 RAVADGRANLA--GMRQVRWRCGQVEHVLRQ---------------RTDTPQVVVLDPPR 332

Query: 302 SGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            G     V  V       ++Y++C+P +L RD++I     + +++L  FD FP T H+EC
Sbjct: 333 KGAGRVVVEAVATAGPDRVVYVACDPAALARDVAIFGEHGYRLDKLRAFDAFPMTHHVEC 392

Query: 359 GVLLVR 364
             LL R
Sbjct: 393 VALLRR 398


>gi|254488424|ref|ZP_05101629.1| 23S rRNA (uracil-5-)-methyltransferase [Roseobacter sp. GAI101]
 gi|214045293|gb|EEB85931.1| 23S rRNA (uracil-5-)-methyltransferase [Roseobacter sp. GAI101]
          Length = 401

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 130/357 (36%), Gaps = 40/357 (11%)

Query: 15  AEKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             K+  ++  + A  +    +  ++ P   R RA F               + +   + I
Sbjct: 68  DFKLGVVKASLDAHGIETVYKPIQTSPAQSRRRATFAAKRTKKGAMAGFHGRGSDTIIEI 127

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLL-----RAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
               PG  L++    ++MA + +   L       K      +T+      +++   + LD
Sbjct: 128 ----PGCQLLD---PDVMAALPIAEKLAMIGTSRKAALAVTVTTSRAGLDISVQNGKPLD 180

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
              R+    L D+L   +             I +    V  R   A  T        +F 
Sbjct: 181 GPLRQELAHLCDSLGLARLTW------EGEVIAMRTPPVQ-RFGAAKVT----PPPGAFL 229

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q        ++  V  A  G    +++L+ G G FSL LA     V AVE       A  
Sbjct: 230 QATPHGEASLVSAVREA-VGSARHVIDLFAGCGTFSLPLAETA-EVHAVEGDPKMTAALD 287

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +         +K V   +++  +      E            +   + +DPPR+G +   
Sbjct: 288 H--GWRMAKGLKPVTCEARDLYRRPLLPDEMG----------KTDAVVLDPPRAGAEAQV 335

Query: 309 VGMVQAYPHIL-YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             +V+A P ++ Y+SCNP +  RD + L +  +T+  + + DQF ++ H+E      
Sbjct: 336 AEIVKAMPPVIAYVSCNPVTFARDAATLIAAGYTLNWVQVVDQFRWSSHVELAAQFT 392


>gi|121602231|ref|YP_988721.1| tRNA (Uracil-5-)-methyltransferase [Bartonella bacilliformis KC583]
 gi|120614408|gb|ABM45009.1| tRNA (Uracil-5-)-methyltransferase [Bartonella bacilliformis KC583]
          Length = 417

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 136/363 (37%), Gaps = 38/363 (10%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           A K   +   +         +  S      +H R R       D            +   
Sbjct: 83  AWKRQLVVDTLKGRG---FDVVVSPLVECGLHTRRRITLTACVDKQGCNIGFNRYLSHNI 139

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + I+        I + + ++     L     AK F I  +TS  +   V L    + D+ 
Sbjct: 140 VAIEECPITCSEIISKLDDIRGICALLG-HHAKRFHI-TITSVDNGLDVALSGCIVQDEL 197

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
            R+  +R             ++  +   +I ++R    E+  +    +        F Q 
Sbjct: 198 TRQKMVRAA-------LSYGIMRLSVDGEILVER----EKPMIHFGDVCVEFPSGGFLQA 246

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                 +++  ++        +  +L+ G G F+L +A+  + V AVE    +       
Sbjct: 247 -TVKAENIISDIILTHFEKAKNAADLFSGVGTFALRMAKKMN-VHAVENNGAA------- 297

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                + N+      +K     +  +R+  R         RF ++  DPPR+G ++    
Sbjct: 298 -----LTNLDRAARFAKGLKTVICEKRDLLRRPLSTEELERFDSVVFDPPRAGAEEQVSE 352

Query: 311 MVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK--P 366
           + + A P ++ +SCNP +  RDLSIL S  + IE++   DQF ++ H+E   +L ++   
Sbjct: 353 LAKTAIPRVVAVSCNPVTFARDLSILVSGGYIIEKIIPIDQFLWSPHVEIVAILNKRKAK 412

Query: 367 SGW 369
           +GW
Sbjct: 413 AGW 415


>gi|224010878|ref|XP_002294396.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220969891|gb|EED88230.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 548

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 88/238 (36%), Gaps = 36/238 (15%)

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
           +      +  +    ++ ++E+L        ++    +F Q N      +   V+   K 
Sbjct: 311 LSNPSPEHPVQHVFGKNCIEEKLGKC----TFQISPGAFFQTNTAGAEKLYSMVVDRVKE 366

Query: 209 IQGD-----LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV--NNV 259
           +  +     L+++ CG G   L L +      ++ V+IAKP++  AR N   N +  N  
Sbjct: 367 VTNNPKDTLLVDVCCGTGTIGLTLMKEGVVGSLVGVDIAKPAILDARANAEKNGMTTNTT 426

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI- 318
           + V   +++      +           I         VDP R GL    +  ++    I 
Sbjct: 427 RFVASPAEKVLPDEMKR----------ISQSCPVVAVVDPARDGLHGTVLKTLRMTERIQ 476

Query: 319 --LYISCNPD-SLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLVR 364
             +Y+SCNP  SLC D  +L              +      D FP T H E  + L R
Sbjct: 477 RIVYVSCNPTGSLCPDAGLLCAPPTKKYPGLPFKVTMAQPCDMFPMTNHCEMVLTLDR 534


>gi|33151692|ref|NP_873045.1| 23S rRNA (uracil-5-)-methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|50401523|sp|Q7VNM5|RUMB_HAEDU RecName: Full=Putative 23S rRNA (uracil-5-)-methyltransferase RumB;
           AltName: Full=23S rRNA(M-5-U747)-methyltransferase
 gi|33147913|gb|AAP95434.1| probable RNA methyltransferase gene fragment [Haemophilus ducreyi
           35000HP]
          Length = 213

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 24/193 (12%)

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLAR----HFDRVL- 235
                F Q N  +   +   V    K +    L +L+CG G F L  A+        V  
Sbjct: 36  IRPQGFFQTNPKVASQLYATVQQWVKILPINHLWDLFCGVGGFGLHCAKALQDQGKPVTL 95

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             +EI+  ++E+A  +     +NNV    + + +F    R++                + 
Sbjct: 96  TGIEISAAAIESATQSAQKLALNNVTFASLDAAQFALKDRQQT--------------PEL 141

Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+       +     P+++Y SCN +S+ +D + L+  + + R+ LFD FP+
Sbjct: 142 VIVNPPRRGIGKDLAEFLNQLNIPYLIYSSCNAESMVKDFAYLTH-YQLHRVQLFDMFPH 200

Query: 353 TRHMECGVLLVRK 365
           T H E   LL+RK
Sbjct: 201 TTHYETVTLLIRK 213


>gi|254707833|ref|ZP_05169661.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           pinnipedialis M163/99/10]
 gi|261315320|ref|ZP_05954517.1| hypothetical protein BAGG_02480 [Brucella pinnipedialis M163/99/10]
 gi|261304346|gb|EEY07843.1| hypothetical protein BAGG_02480 [Brucella pinnipedialis M163/99/10]
          Length = 414

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 130/353 (36%), Gaps = 32/353 (9%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +      V    +    P H R RA F        +       Q+ E + I
Sbjct: 88  WKRELVVGALKGRGIDVEVAPLVACNP-HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++     L        F++    ++S   +      +L D+    
Sbjct: 147 VECPVTVPEIIARLDDLREVGALLAPGSGP-FKLAATLTESGLDLAASGCGKLNDEQ--- 202

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                R AL A   +      +++ +I ++     ++  +    +        F Q  A 
Sbjct: 203 -----RRALTALVIKKDFARLSHEGEIIVE----PKKPLIHFGKVPVPVPPGCFLQATAE 253

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M   VLA   G    + +L+CG G F+L +A     V AVE    ++ A       
Sbjct: 254 AEETMAALVLA-HLGKARRVADLFCGVGTFALRIAEKSA-VHAVENDAAALAALDR---- 307

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                V+ V+             R+  R   +      +  +  DPPR+G ++  + + +
Sbjct: 308 ----GVRHVQG----LKPVSIERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALELAK 359

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L +
Sbjct: 360 SKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|163842718|ref|YP_001627122.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella suis ATCC
           23445]
 gi|163673441|gb|ABY37552.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Brucella suis ATCC
           23445]
          Length = 415

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 130/353 (36%), Gaps = 32/353 (9%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +      V    +    P H R RA F        +       Q+ E + I
Sbjct: 88  WKRELVVGALKGRGIDVEVAPLVACNP-HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++     L        F++    ++S   +      +L D+    
Sbjct: 147 VECPVTVPEIIARLDDLREVGALLAPGSGP-FKLAATLTESGLDLAASGCGKLNDEQ--- 202

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                R AL A   +      +++ +I ++     ++  +    +        F Q  A 
Sbjct: 203 -----RRALTALVIKKDFARLSHEGEIIVE----PKKPLIHFGKVPVPVPPGCFLQATAE 253

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M   VLA   G    + +L+CG G F+L +A     V AVE    ++ A       
Sbjct: 254 AEETMAALVLA-HLGKARRVADLFCGVGTFALRIAEKSA-VHAVENDAAALAALDR---- 307

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                V+ V+             R+  R   +      +  +  DPPR+G ++  + + +
Sbjct: 308 ----GVRHVQG----LKPVSIERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALELAK 359

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L +
Sbjct: 360 SKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|23501339|ref|NP_697466.1| RNA methyltransferase [Brucella suis 1330]
 gi|161618410|ref|YP_001592297.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           canis ATCC 23365]
 gi|225626946|ref|ZP_03784985.1| tRNA (Uracil-5-)-methyltransferase [Brucella ceti str. Cudo]
 gi|254701243|ref|ZP_05163071.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella suis
           bv. 5 str. 513]
 gi|254703790|ref|ZP_05165618.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella suis
           bv. 3 str. 686]
 gi|254709586|ref|ZP_05171397.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           pinnipedialis B2/94]
 gi|254712998|ref|ZP_05174809.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti
           M644/93/1]
 gi|254716648|ref|ZP_05178459.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti
           M13/05/1]
 gi|256031078|ref|ZP_05444692.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           pinnipedialis M292/94/1]
 gi|256060572|ref|ZP_05450740.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           neotomae 5K33]
 gi|256159142|ref|ZP_05456963.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti
           M490/95/1]
 gi|256254481|ref|ZP_05460017.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella ceti
           B1/94]
 gi|256368893|ref|YP_003106399.1| RNA methyltransferase putative, TrmA family [Brucella microti CCM
           4915]
 gi|260168209|ref|ZP_05755020.1| RNA methyltransferase putative, TrmA family protein [Brucella sp.
           F5/99]
 gi|260566957|ref|ZP_05837427.1| SAM binding domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|261218449|ref|ZP_05932730.1| hypothetical protein BAJG_01894 [Brucella ceti M13/05/1]
 gi|261221654|ref|ZP_05935935.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|261317114|ref|ZP_05956311.1| hypothetical protein BAHG_00763 [Brucella pinnipedialis B2/94]
 gi|261320701|ref|ZP_05959898.1| hypothetical protein BAIG_01275 [Brucella ceti M644/93/1]
 gi|261324567|ref|ZP_05963764.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261751782|ref|ZP_05995491.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261754437|ref|ZP_05998146.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 3 str. 686]
 gi|261757670|ref|ZP_06001379.1| SAM binding domain-containing protein [Brucella sp. F5/99]
 gi|265988151|ref|ZP_06100708.1| hypothetical protein BALG_00728 [Brucella pinnipedialis M292/94/1]
 gi|265997616|ref|ZP_06110173.1| hypothetical protein BAPG_00737 [Brucella ceti M490/95/1]
 gi|50401590|sp|Q8G290|Y438_BRUSU RecName: Full=Uncharacterized RNA methyltransferase BR0438
 gi|23347230|gb|AAN29381.1| RNA methyltransferase putative, TrmA family [Brucella suis 1330]
 gi|161335221|gb|ABX61526.1| 23S ribosomal RNA (uracil-5-)-methyltransferase rumA [Brucella
           canis ATCC 23365]
 gi|225618603|gb|EEH15646.1| tRNA (Uracil-5-)-methyltransferase [Brucella ceti str. Cudo]
 gi|255999051|gb|ACU47450.1| RNA methyltransferase putative, TrmA family [Brucella microti CCM
           4915]
 gi|260156475|gb|EEW91555.1| SAM binding domain-containing protein [Brucella suis bv. 4 str. 40]
 gi|260920238|gb|EEX86891.1| RNA methyltransferase [Brucella ceti B1/94]
 gi|260923538|gb|EEX90106.1| hypothetical protein BAJG_01894 [Brucella ceti M13/05/1]
 gi|261293391|gb|EEX96887.1| hypothetical protein BAIG_01275 [Brucella ceti M644/93/1]
 gi|261296337|gb|EEX99833.1| hypothetical protein BAHG_00763 [Brucella pinnipedialis B2/94]
 gi|261300547|gb|EEY04044.1| RNA methyltransferase [Brucella neotomae 5K33]
 gi|261737654|gb|EEY25650.1| SAM binding domain-containing protein [Brucella sp. F5/99]
 gi|261741535|gb|EEY29461.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261744190|gb|EEY32116.1| tRNA (Uracil-5-)-methyltransferase [Brucella suis bv. 3 str. 686]
 gi|262552084|gb|EEZ08074.1| hypothetical protein BAPG_00737 [Brucella ceti M490/95/1]
 gi|264660348|gb|EEZ30609.1| hypothetical protein BALG_00728 [Brucella pinnipedialis M292/94/1]
          Length = 415

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 130/353 (36%), Gaps = 32/353 (9%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +      V    +    P H R RA F        +       Q+ E + I
Sbjct: 88  WKRELVVGALKGRGIDVEVAPLVACNP-HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++     L        F++    ++S   +      +L D+    
Sbjct: 147 VECPVTVPEIIARLDDLREVGALLAPGSGP-FKLAATLTESGLDLAASGCGKLNDEQ--- 202

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                R AL A   +      +++ +I ++     ++  +    +        F Q  A 
Sbjct: 203 -----RRALTALVIKKDFARLSHEGEIIVE----PKKPLIHFGKVPVPVPPGCFLQATAE 253

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M   VLA   G    + +L+CG G F+L +A     V AVE    ++ A       
Sbjct: 254 AEETMAALVLA-HLGKARRVADLFCGVGTFALRIAEKSA-VHAVENDAAALAALDR---- 307

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                V+ V+             R+  R   +      +  +  DPPR+G ++  + + +
Sbjct: 308 ----GVRHVQG----LKPVSIERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALELAK 359

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L +
Sbjct: 360 SKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|145340943|ref|XP_001415576.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575799|gb|ABO93868.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 581

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 51/250 (20%), Positives = 90/250 (36%), Gaps = 54/250 (21%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNFSLVL 227
           + +      L +     +F Q N      +       A+ G Q  LL++ CG G   L L
Sbjct: 332 DIIHEHMCGLQFSLSATAFFQVNTVAAEALYRLAGEWASPGGQSLLLDVCCGTGTIGLTL 391

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE--------- 278
           AR   +V+ V+I + S+  A  N   N V+N   +   ++     +  + +         
Sbjct: 392 ARAVKKVVGVDIVEESIRDAFTNAKLNGVDNTDWLAGKAEHVLPKVLNDYKTLIRPDGRA 451

Query: 279 ------FNRLKDIDI------------------------HSYRFKTIFVDPPRSGLDDAT 308
                  + L D D+                        H +      VDPPR+GL    
Sbjct: 452 PKPFTAVSVLDDPDLSADEETEAIVEAKETTNAELVGANHEFDDVVAIVDPPRAGLHRHV 511

Query: 309 VGMVQAY---PHILYISCNPDSLCRDLSILS-----------TTHTIERLALFDQFPYTR 354
           +  ++       ++Y+SCN +++  ++  L               T  +    D FP+T 
Sbjct: 512 LSALRRENRLKRLVYVSCNANTMATNVIDLCVPQGADGNGGGVPFTPVKALALDLFPHTA 571

Query: 355 HMECGVLLVR 364
           H+E  +LL R
Sbjct: 572 HVEAVLLLER 581


>gi|325283297|ref|YP_004255838.1| (Uracil-5)-methyltransferase [Deinococcus proteolyticus MRP]
 gi|324315106|gb|ADY26221.1| (Uracil-5)-methyltransferase [Deinococcus proteolyticus MRP]
          Length = 419

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 135/377 (35%), Gaps = 57/377 (15%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y  QL  K D + + +              +       YR  A++ +   G    
Sbjct: 83  LAHASYAAQLRYKRDFVVEALTRIGKLSGHRVEETVPSPAQTGYRSGAQYLVTPQG---- 138

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS-QSDQAI 118
               +++      +++      LI   + E+++  RL+P L A   +I    S  S + +
Sbjct: 139 LAYRERREHRPRLVEH----DPLIAPFVAELLS--RLDPALLAPAGEIAVRGSFLSGEVV 192

Query: 119 VTLIYHRLLDDAWRECAIRLRDALH---ARKYQIQLIGRANK-----TKICLDRDYVDER 170
             LI          E    LR A H   A    + L   A K      ++      V ER
Sbjct: 193 AALI-------GPGEPRTYLRAADHLMDAGAVGVSLAAPAGKRFSAGVRLIAGESTVPER 245

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
                  +I       F+Q N      +    +A   G      +LY G G     L R 
Sbjct: 246 FG----DVILPVSAVGFSQVNPAAAG-LAYLQVAELAGQGSHAADLYGGAGAIGRHLTRS 300

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           F++V  ++ +  ++   R       + N+   + ++                   ++   
Sbjct: 301 FEQVTVLDSSAEALTRGRQAAGEAEIRNITFQQGAA------------------EELEEL 342

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             + I VDPPR+GLD A  G + A     ++Y+SC+P +  RD+  L      + R+   
Sbjct: 343 SAEVIVVDPPRAGLDPAVRGHIHASTADRLVYVSCDPATWARDVGDLVGRGWKLGRVVPH 402

Query: 348 DQFPYTRHMECGVLLVR 364
           D +P T H+E   +L R
Sbjct: 403 DFYPQTSHVEVVSVLER 419


>gi|304389387|ref|ZP_07371351.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327376|gb|EFL94610.1| TrmA family RNA methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 504

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 140/385 (36%), Gaps = 78/385 (20%)

Query: 10  YEQQLAEKVDRLR---------QMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGD 56
           Y  QL  K D +R         +++           ++   SEP   R R  F +   G 
Sbjct: 87  YPAQLRWKRDVVRDAIRRNGSSELLAELDQAHPGWEVESSGSEPG--RTRVSFTVCEGGG 144

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                M++        +  F    LL+  L       + L+   R   F           
Sbjct: 145 L---GMYEAAAHNVHTVRSFP---LLVPEL-------VDLDLFRRHWEFTPG-------- 183

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY----VDERLT 172
                               RLR    +    +  +   +   + +D +     V E + 
Sbjct: 184 -------------------TRLRVIAPSSSAPVLFV---DGQTLSVDGEPTTSRVRETVH 221

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
           V   T  YR    SF Q +      +   +  A   I+G +  ELY G+G FSL LA+  
Sbjct: 222 VDDLTFTYRIFSGSFWQTDRRAPAILAAALRDALGQIEGFEAWELYSGSGLFSLFLAQGL 281

Query: 232 D---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               R+  VE   P+ ++A YN+A    + V++ R +    +  +        +      
Sbjct: 282 GAKGRLTTVEGDGPATKSAAYNLAKAGFDQVEVRRGN---VSPQLLSSLPMGEM------ 332

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYI-SCNPDSLCRDLSILST-THTIERLA 345
             +   +  DPPRSGL  A    + A +P ++ + SC+P S  RDL  +    + ++   
Sbjct: 333 VSQGTLVVADPPRSGLGKAVTRAICAQHPDLVALFSCDPVSCARDLETMRQLGYRVKTWR 392

Query: 346 LFDQFPYTRHMECGVLLVRKPSGWH 370
           +FD FPYT H+E   LL +     H
Sbjct: 393 VFDLFPYTSHVETVALLSKLDVEKH 417


>gi|116327717|ref|YP_797437.1| RNA methyltransferase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331622|ref|YP_801340.1| RNA methyltransferase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120461|gb|ABJ78504.1| RNA methyltransferase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125311|gb|ABJ76582.1| RNA methyltransferase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 454

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 148/384 (38%), Gaps = 34/384 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
             +     YE+Q   K   L +     F +  +     + +HYR R +F ++        
Sbjct: 81  GCSAQHIPYEEQFHYKTSALLESYKKDFGIEPILHPALKKLHYRNRMDFAVF---PGPVI 137

Query: 61  IMFDQQT-KERMRIDYFMPGSLLINALMIE---MMATIRLEPLLRA------KLFQIDYL 110
                 + +  + +++    S   NA +     +++     P  R       K   +   
Sbjct: 138 GQRKSGSFRHVVDLEFCFIQSEESNAELKRFRSLISEFPDLPYNRKSDSGFLKYLTLRKA 197

Query: 111 TSQSDQA-IVTLIYHRLLDDAWRECAIRLRDALHAR------KYQIQLIGRANKTKICLD 163
           T+ S+   I+T I      D   + A      L A         +   I    + K+   
Sbjct: 198 TNSSELMTILTFIEEFKNSDQEEKLAKACLKYLKADHILFCFNRKKGEISAVGEVKVLKG 257

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           R+   E ++       +R   +SF QPN      +L+++          L++L+CG+G F
Sbjct: 258 RESYLEFVSGKE----FRVPFDSFFQPNPEGFQPILDFIEKEIPKPSDHLIDLFCGSGFF 313

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           S + A  F ++  ++  + S+E A   +      +     +      + +  ++ F++L 
Sbjct: 314 SRIFAHKFRKITGIDSIESSLEIAHKQM------SFDFPEIEFSYLREDLFSKKSFSQL- 366

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTI 341
           +I + S     +  DPPR+GL +     ++        Y+SCNP S   DL  L     I
Sbjct: 367 NILLQSREKNILIADPPRAGLGEFVTEALKNSKISSFFYVSCNPTSQKEDLRKLKDFFQI 426

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           +++ + D +P T H+E   LL  K
Sbjct: 427 QKILITDPYPQTPHLESVALLSSK 450


>gi|260428897|ref|ZP_05782874.1| hypothetical protein CSE45_3393 [Citreicella sp. SE45]
 gi|260419520|gb|EEX12773.1| hypothetical protein CSE45_3393 [Citreicella sp. SE45]
          Length = 407

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 130/353 (36%), Gaps = 32/353 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             KV  +R  + A  +         S+P   R RA F               + +   + 
Sbjct: 79  DWKVGVVRHALSAHGLETEFRPCTTSKPQS-RRRATFSARRTKKGALAGFHMKGSDVIVP 137

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           +   +     + A +  + A   L    + +L     LT+ ++   V +   + LD   +
Sbjct: 138 VPDCLLVDPKLAAGLPLVEAMAVLGGSRKGEL--SVLLTTGANGLDVRVTGGKELDPQLQ 195

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
                L     AR + +  +   ++  + L R    +++  A           +F Q   
Sbjct: 196 SELADL-----ARAHDVARVAWGDE--VALTRRPAAQKMGRAEVV----PPPGAFLQATP 244

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +L  V  A  G    +++L+ G G F+L LA +  RV AVE  K    A      
Sbjct: 245 EGEAALLAGVREA-VGDASHIVDLFAGCGTFALPLAENA-RVHAVEGDKAMTVALDKGWR 302

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                        ++         R+  R   +    +RF    +DPPR+G +     + 
Sbjct: 303 M------------AEGLRHVTSEARDLFRNPLLPEDLHRFDAAVIDPPRAGAEAQVAELA 350

Query: 313 QAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
            A  P I ++SCNP +  RD S+L    +T++ L + DQF ++ H+E    L 
Sbjct: 351 AARIPRIAFVSCNPVTFARDASVLVGAGYTLDWLQVVDQFRWSTHVELVAQLS 403


>gi|303280081|ref|XP_003059333.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226459169|gb|EEH56465.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 459

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 104/458 (22%), Positives = 162/458 (35%), Gaps = 105/458 (22%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPI-HYRMRAEFHI-----------WH 53
            YE  L  K + +        V +   L++  S     +R R  F I             
Sbjct: 3   SYEDLLHAKAEAVCDKFFDALVKDDVALEVIPSPKRAGHRGRCRFAIVADAADLDAADAR 62

Query: 54  DGDDLYHIMFDQQTKERMRID-------YFMPGSLLINALMIEMMATIR----------- 95
               L   ++++     +R +        F   S  I   M      +            
Sbjct: 63  GRAPLRCAVYEKGEVRALRCEDAAGVRREFPAASDAIARTMPGFTRAVNCARGGGGDGGD 122

Query: 96  -LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA-----------WRECAIRLRDALH 143
             E  L   L   ++L S+  + +VTL Y     +            W   A  L  ++ 
Sbjct: 123 DGESALTRGLAAAEFLASRDGEVVVTLWYAGNAGNLNGDVAESKGATWDTWANELMASVP 182

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGR--------------------------- 176
                +        T     RD+V E +T+                              
Sbjct: 183 GVVGVVARRRGRKPTTNSTGRDHVWETMTIPSFATDEEIDETGAGGDAGRAKAKAKTPPL 242

Query: 177 -------TLIYRQIENSFTQPNAGINVH-----MLEWVLAATKGIQGD------------ 212
                  TL Y+Q+E +F+ PN  +        + E         +              
Sbjct: 243 EPPGLRSTLTYKQVEGAFSCPNGDVAEETARSVVTEIAYERIGAGKTKNGFSEDVTEFPT 302

Query: 213 ---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L ELYCGNGN +  LA +FD V AVEI      AA  N  AN V N  +  + ++ F
Sbjct: 303 LSSLTELYCGNGNHTCSLAPYFDEVSAVEIDPRLCAAAAENFKANGVANATVRALPAEAF 362

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
                 E E    K ++        + VDPPR+GLD+ T+ + + +  I+YI+C+ ++L 
Sbjct: 363 A----AETEGEDAKKLNGALNTEGVVLVDPPRAGLDEKTLALARKFRSIIYIACDFNALH 418

Query: 330 RDLSI--LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           RDL    L  TH ++ LALFD FP++  +E  V L R+
Sbjct: 419 RDLEERGLRRTHVVKELALFDHFPFSAFVEVAVRLERR 456


>gi|17987779|ref|NP_540413.1| tRNA (uracil-5-) -methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|256044155|ref|ZP_05447062.1| tRNA (uracil-5-) -methyltransferase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260563512|ref|ZP_05833998.1| SAM binding domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|265990567|ref|ZP_06103124.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
 gi|50401634|sp|Q8YFM4|Y1496_BRUME RecName: Full=Uncharacterized RNA methyltransferase BMEI1496
 gi|17983503|gb|AAL52677.1| tRNA (uracil-5-) -methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|260153528|gb|EEW88620.1| SAM binding domain-containing protein [Brucella melitensis bv. 1
           str. 16M]
 gi|263001351|gb|EEZ13926.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 415

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 123/325 (37%), Gaps = 29/325 (8%)

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
           H R RA F        +       Q+ E + I         I A + ++     L     
Sbjct: 115 HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDIVECPVTVPEIIARLDDLREVGALLAPGS 174

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
              F++    ++S   +      +L D+         R AL A   +      +++ +I 
Sbjct: 175 GP-FKLAATLTESGLDLAASGCGKLNDEQ--------RRALTALVIKKDFARLSHEGEII 225

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           ++     ++  +    +        F Q  A     M   VLA   G    + +L+CG G
Sbjct: 226 VE----PKKPLIHFGKVPVPIPPGCFLQATAEAEETMAALVLA-HLGKARRVADLFCGVG 280

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F+L +A     V AVE    ++ A            V+ V+             R+  R
Sbjct: 281 TFALRIAEKSA-VHAVENDAAALAALDR--------GVRHVQG----LKPVSIERRDLFR 327

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTH 339
              +      +  +  DPPR+G ++  + + +     ++ ISCNP +L RDL+IL    +
Sbjct: 328 RPLMTKELLPYNAVVFDPPRAGAEEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGY 387

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            IER+   DQF ++ H+E   +L +
Sbjct: 388 RIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|254464905|ref|ZP_05078316.1| (Uracil-5)-methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206685813|gb|EDZ46295.1| (Uracil-5)-methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 384

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 120/355 (33%), Gaps = 26/355 (7%)

Query: 15  AEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             K D +R  + A  +    +   + P   R RA   +             Q +     I
Sbjct: 53  QWKTDVVRNALTAQGLETEFRPAHTSPSQSRRRATLAVRRTKKGAMAGFHGQASDVITEI 112

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    + A +  +   + L    R     +    S +   ++     + LD   R 
Sbjct: 113 PDCQLLDPALMAAIP-VAEALALAGASRKAPLSVTVTASDAGLDMLVR-NGKPLDGPLRI 170

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
              +L +     +        A +      + +    +              +F Q    
Sbjct: 171 ALAQLAEQHRIARLTWDDELVAMEQPPV--QPFGPALVCP---------PPGAFLQATKD 219

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               +L  V   T+G +  +++L+ G G F+L LA+    V AVE  +  V  A  +   
Sbjct: 220 GEAALLAAVQEITRGAK-RIVDLFAGCGTFALPLAQTA-EVHAVEGERDMV--AALDAGW 275

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                +K V   +++  +      + N           F    +DPPR+G +     + +
Sbjct: 276 RKAKGLKKVTTETRDLFRNPLLPEDLNPF------GAAFDAAVIDPPRAGAEAQVAQLAK 329

Query: 314 AY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
           A  P I Y+SCNP S  RD   L+   + +  + + DQF ++ H+E       K 
Sbjct: 330 ARTPVIAYVSCNPVSFARDAKTLAAAGYDLGWVQVVDQFRWSAHIEAVARFTLKD 384


>gi|289677066|ref|ZP_06497956.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. syringae FF5]
          Length = 148

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 14/156 (8%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +++L+CG GNF+L LA     V+AVE     VE A  N  +N ++NV+  +    + 
Sbjct: 2   DERVMDLFCGLGNFALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQ- 60

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSL 328
                       L   D  +  F  + +DPPR G  +    + +     +LY+SCNP +L
Sbjct: 61  -----------PLTHADWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATL 109

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
            RD   L    + ++R  + D FP T H+E   L  
Sbjct: 110 ARDAVELIRQGYRLKRAGILDMFPQTAHVEAMALFE 145


>gi|169623498|ref|XP_001805156.1| hypothetical protein SNOG_14991 [Phaeosphaeria nodorum SN15]
 gi|111056414|gb|EAT77534.1| hypothetical protein SNOG_14991 [Phaeosphaeria nodorum SN15]
          Length = 577

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 135/411 (32%), Gaps = 77/411 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFR------SEPIHYRMRAEFHIWHDG 55
                +  Y+ QL  K   + +    F     ++          P+ Y  R +     DG
Sbjct: 173 GCQFQMLPYDFQLQHKRSIVEKAYKNFSNLPPELIPVIGDTIGSPLQYGYRTKLTPHFDG 232

Query: 56  ------DDLYHIM------------FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
                  D  H +              + T+  M I+    G+  I          +  E
Sbjct: 233 PPDARRSDGRHGIRRTFKEMPPIGFMKKGTRITMDIEDCPIGTDAIRNGNKRERKRVAAE 292

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
                K   I          ++     R+    +       +DA+   +          K
Sbjct: 293 LANYKKGATI----------LLRESTERIPKSEYDASKEEDKDAVIEERGDFIH----RK 338

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----- 212
           T +        E +     T  +     SF Q N  I     +++         +     
Sbjct: 339 TCVTDPNAKTTEYI---DDTFQFVNPAGSFFQNNNSILPVFTQYIREHILPTTPEHKITH 395

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFT 270
           L++ Y G+G F++ L+  F   L ++I+  S+++A  N   N++     + +   + +  
Sbjct: 396 LIDAYSGSGLFTITLSELFKSSLGIDISSSSIDSATTNARLNNLPSTTTRFIAADAAKLF 455

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSL 328
            ++                 +   + +DPPR G D++ +  +       ++Y+SCN  + 
Sbjct: 456 ASIS-------------SPAKETVVMIDPPRKGCDESFLRQLVEYGPQRVVYVSCNVHTQ 502

Query: 329 CRDLSIL--------------STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            RD+ +L                 + IE L  FD FP T H+E   +L RK
Sbjct: 503 ARDVGVLVGGMMGVDGGFGKGEGCYEIESLRGFDFFPMTGHVEGVAVLRRK 553


>gi|317125054|ref|YP_004099166.1| 23S rRNA m(5)U-1939 methyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315589142|gb|ADU48439.1| 23S rRNA m(5)U-1939 methyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 418

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 132/371 (35%), Gaps = 73/371 (19%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQV----PNLQIFRSEP--IHYRMRAEFHIWHDGDDLYH 60
              Y+++L  K   +R+ +         P +Q    +   + +R R EF +   G     
Sbjct: 104 TLPYQREL--KAAVVREQLARLAGLDVDPEVQPVPGDEDGLRWRTRVEFAVNRSG---RA 158

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
            +   +++  + +D  +  +  +                                     
Sbjct: 159 GLRGHRSRHIVPVDDCLIATRGV------------------------------------- 181

Query: 121 LIYHRLLDDAW-RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            +   +LD  W    A+ + DA H  +  +  +  A    +      V ER+        
Sbjct: 182 -VGSGVLDTDWSGCTAVDVVDAAHPEEPVLVPLPLAKG--LDAGGGLVGERVVDGEWAGE 238

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVL 235
           Y      F Q + G     L  V++  +   GD +++LY G+G F++ L         VL
Sbjct: 239 YVVAARGFWQVHPGAASTFLSRVVSLLEPAPGDRVIDLYAGSGLFTMRLGELVAPDGFVL 298

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE  + +V     N    H+ NV+             R  R    L  +         +
Sbjct: 299 GVEGDRAAVANGALNTE--HLENVE------------WRTNRVERELASLVAQGISADLV 344

Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
            +DPPR+G   A +  + A     ++Y++C+P +L RD+       + +  +  +D FP 
Sbjct: 345 VLDPPRTGAGPAVMADLAALQPRRVVYVACDPAALARDVQAAGAHGYRLAHVEAWDAFPM 404

Query: 353 TRHMECGVLLV 363
           T H+EC  +L 
Sbjct: 405 THHVECIAVLE 415


>gi|110633094|ref|YP_673302.1| (Uracil-5)-methyltransferase [Mesorhizobium sp. BNC1]
 gi|110284078|gb|ABG62137.1| 23S rRNA m(5)U-1939 methyltransferase [Chelativorans sp. BNC1]
          Length = 413

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 131/354 (37%), Gaps = 32/354 (9%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K D++ + +     +     +    P   R R        G          Q+ + + 
Sbjct: 83  EWKRDKVVRALRSRGLEAEVAPLVLCPPAS-RRRVTLTARSAGGRTLLGFNAAQSHQIVE 141

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I+        I A + ++   + L     +K F I    +++   I      RL +    
Sbjct: 142 IEECAIAVPQIVAALPDLRLLVGLIAA-GSKPFHITVTATRTGLDIAAEESGRLGE---- 196

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           +   +      A+ +    +G     ++ ++R    E+  V    +        F Q   
Sbjct: 197 QKRQKALQFALAKGFARLSVGG----EVLVER----EKPVVMFGDVPVAIPPGGFLQATE 248

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                M   V A  KG +  + +L+ G+G F+L LAR   RV AVE    ++ A      
Sbjct: 249 QAEEAMAGLVTAHFKGAKH-VADLFAGSGTFALRLARQA-RVHAVESEGAALAALEDAAK 306

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
               + +K V +  ++        +E            ++  +  DPPR G +     + 
Sbjct: 307 --GASGLKPVSVERRDLFNRPILAKEL----------AQYDGLVFDPPRVGAEAQCRQLA 354

Query: 313 QAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++    +  +SCNP +L RDLSIL    + I ++   DQF ++ H+E   LL R
Sbjct: 355 RSTVNRVAAVSCNPGTLARDLSILVEGGYRIAKVTPIDQFLWSPHVEVVALLER 408


>gi|256112958|ref|ZP_05453866.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994397|ref|ZP_06106954.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
 gi|262765510|gb|EEZ11299.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
          Length = 415

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 123/325 (37%), Gaps = 29/325 (8%)

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
           H R RA F        +       Q+ E + I         I A + ++     L     
Sbjct: 115 HTRRRAVFAARKTEKGVLLGCNRHQSHEIIDIVECPVTVPEIIARLDDLREVGALLAPGS 174

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
              F++    ++S   +      +L D+         R AL A   +      +++ +I 
Sbjct: 175 GP-FKLAATLTESGLDLAASGCGKLNDEQ--------RRALTALVIKKDFARLSHEGEII 225

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           ++     ++  +    +        F Q  A     M   VLA   G    + +L+CG G
Sbjct: 226 VE----PKKPLIHFGKVPVPVPPGCFLQATAEAEETMAALVLA-HLGKARRVADLFCGVG 280

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F+L +A     V AVE    ++ A            V+ V+             R+  R
Sbjct: 281 TFALRIAEKSA-VHAVENDAAALAALDR--------GVRHVQG----LKPVSIERRDLFR 327

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTH 339
              +      +  +  DPPR+G ++  + + +     ++ ISCNP +L RDL+IL    +
Sbjct: 328 RPLMTKELLPYNAVVFDPPRAGAEEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGY 387

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            IER+   DQF ++ H+E   +L +
Sbjct: 388 RIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|283458269|ref|YP_003362888.1| SAM-dependent methyltransferase [Rothia mucilaginosa DY-18]
 gi|283134303|dbj|BAI65068.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Rothia mucilaginosa
           DY-18]
          Length = 545

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 142/425 (33%), Gaps = 87/425 (20%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIH-------YRMRAEFHI----- 51
           ++Q   K D +R  +       L+       +    P+        +R R  +++     
Sbjct: 122 DEQRRYKTDIVRTQINRLGGLPLESPLLTNLMVEELPLRDNNEGLSWRSRVRYNVTKVRA 181

Query: 52  ----WHDGDDL------YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
                 +G            M   +  + + +  F   +          +  ++LE L  
Sbjct: 182 HNSEEQNGGKKSPAVTWRVGMHPYRASQPVPVVDFPLAA--------TELRNLQLEQLNL 233

Query: 102 AKLFQIDYLTSQSDQAIVTLI-------------YHRLLDDAWRECAIRL---------- 138
             + +++   S   + ++  I               +   DAW   A R           
Sbjct: 234 RGVREVEATVSSRGRVLLQFIVDPRFSVEEVAKDIEQQASDAWGLLAKRKISLFFTPQST 293

Query: 139 -----RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                +       +            +      V E +T   R   Y+     F Q +  
Sbjct: 294 SNGKPKRRRPGSAHSPYRRVPEGDQLLGAGLRSVTEEVTFGSRRFSYQVSAGGFWQIHRA 353

Query: 194 INVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARY 249
               M+  +L   +  +G+  L+LY G G F+  LA        V+++E +  + + AR 
Sbjct: 354 APSTMVGTMLTMLRPQEGECTLDLYAGAGLFTAALADAVGATGTVVSIEGSPVTHKDARS 413

Query: 250 NIAANHV--------NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           N A +            ++++R         ++   EF  +  ID        + +DP R
Sbjct: 414 NFAPDGCSRTENSADTRIEVIRGDVARHLVDLKTALEFGEIPAIDA-------VVLDPSR 466

Query: 302 SGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMEC 358
            G +  T+  + A     ILY++C+P SL RD  IL      + +L  FD +P T H+E 
Sbjct: 467 EGANRTTLERLDALDPKRILYVACDPASLGRDTGILRELGWDMVQLRAFDMYPNTHHVET 526

Query: 359 GVLLV 363
             L  
Sbjct: 527 VALFE 531


>gi|254500616|ref|ZP_05112767.1| tRNA (Uracil-5-)-methyltransferase superfamily [Labrenzia
           alexandrii DFL-11]
 gi|222436687|gb|EEE43366.1| tRNA (Uracil-5-)-methyltransferase superfamily [Labrenzia
           alexandrii DFL-11]
          Length = 410

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 134/357 (37%), Gaps = 34/357 (9%)

Query: 14  LAEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           L+ K + + + +          Q   +     R RA F     G  +     ++ + + +
Sbjct: 83  LSWKRNLVEKALKTQGIDAEVAQTIAATEGG-RRRAAFTATRAGRAVLLGYHEKASHKLV 141

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            I         I + +  + + +  + + +    +I  L++ S   +         D A 
Sbjct: 142 DISECPVLDPSITSALKGLKS-LAADLVPKNGELRITVLSTTSGLDV-------AFDKAD 193

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +    ++  AL  +  ++ L   +   ++ L+   V   L   G T +       FTQ  
Sbjct: 194 KAYDRKIP-ALSQKTVELDLARLSVNGEVLLE---VRPPLLDMGGTGLV-PPPGGFTQA- 247

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                  L  ++ A  G    + +L+ G G F+L LAR  + V AVE    ++ A   ++
Sbjct: 248 TLAAEQALSELVVAGVGKAKTVADLFSGVGTFALRLARTAN-VHAVEGDSAAIAALDRSL 306

Query: 252 AA-NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                +  V                +R+  R   +      F  +  DPPR+G       
Sbjct: 307 RKPQGLKKVTF-------------EKRDLFRRPLVPEELEPFAAVVFDPPRAGAQAQAEM 353

Query: 311 MVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           + +     I+ +SCNP +L RDL IL    + +  +   DQF ++ H+E   +L R+
Sbjct: 354 LAKSKVKTIVAVSCNPATLARDLRILIDGGYALHTVTPVDQFHFSPHIEAVAVLKRE 410


>gi|294851816|ref|ZP_06792489.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
 gi|294820405|gb|EFG37404.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
          Length = 415

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 130/353 (36%), Gaps = 32/353 (9%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +      V    +    P H R RA F        +       Q+ E + I
Sbjct: 88  WKRELVVGALKGRGIDVEVAPLVACNP-HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++     L        F++    ++S   +      +L D+    
Sbjct: 147 VECPVTVPEIIARLDDLREVGALLAPGSGP-FKLAATLTESGLDLAASGCGKLNDEQ--- 202

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                R AL A   +      +++ +I ++     ++  +    +        F Q  A 
Sbjct: 203 -----RRALTALVIKKDFARLSHEGEIIVE----PKKPLIHFGKVPVPVPPGCFLQATAE 253

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M   VLA   G    + +L+CG G F+L +A     V AVE    ++ A       
Sbjct: 254 AEETMAALVLA-HLGKARCVADLFCGVGTFALRIAEKSA-VHAVENDAAALAALDR---- 307

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                V+ V+             R+  R   +      +  +  DPPR+G ++  + + +
Sbjct: 308 ----GVRHVQG----LKPVSIERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALELAK 359

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                ++ ISCNP +L RDL+IL    + IER+   DQF ++ H+E   +L +
Sbjct: 360 SKVEKVVAISCNPVTLARDLAILQKGGYRIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|326331786|ref|ZP_08198074.1| putative RNA methyltransferase [Nocardioidaceae bacterium Broad-1]
 gi|325950585|gb|EGD42637.1| putative RNA methyltransferase [Nocardioidaceae bacterium Broad-1]
          Length = 399

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 26/208 (12%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSL 225
           V E + V G    +    + F Q + G    ++  VL+A + + G  +L+LY G G FS 
Sbjct: 208 VVETVEVGGAKHSFEVAADGFWQVHPGAPTALVSAVLSALEPMPGQSVLDLYAGVGLFSA 267

Query: 226 VLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            LA       RV+AVE  +          +A  V N+    +++ +    +         
Sbjct: 268 FLADEVGPSGRVVAVEGDQT--------ASALSVGNLPGAEVTAGDVATVLA-------- 311

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-TH 339
              D+    F  + +DPPR G   A V  V  ++   + Y++C+P +L RD++I +   +
Sbjct: 312 ---DLAEGPFDLVVLDPPREGARRAVVDAVVARSPQKVAYVACDPAALARDVAIFAEHGY 368

Query: 340 TIERLALFDQFPYTRHMECGVLLVRKPS 367
            +  L  FD FP T H+EC  LL +  S
Sbjct: 369 RLRTLRAFDLFPMTHHVECVALLTKAGS 396


>gi|170594415|ref|XP_001901959.1| hypothetical protein [Brugia malayi]
 gi|158590903|gb|EDP29518.1| conserved hypothetical protein [Brugia malayi]
          Length = 659

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 143/480 (29%), Gaps = 133/480 (27%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNL----------------QIFRSEP--IHYRMR 46
           L    Y +QL  K+  ++++ + F    +                +  R  P    YR +
Sbjct: 193 LADIPYSEQLEIKMKDVKRIAMNFLKEMIVAHVNGANRIDIESLIESIRPSPRITGYRNK 252

Query: 47  AEFHIWHDGDD-----LYHIMFDQQTKERMRIDYFMPGSLLI-------NALMIEMMATI 94
            EF I H+ D           F       + +D     S  +         L++E   + 
Sbjct: 253 CEFTIGHNIDGHICVGFVGGRFAANEHFVVPVDTCDNISAHMKRIVGAFEKLVLESGESP 312

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
             E   +     +      SD  ++  I+   ++D  +E    L+  +  R  Q+  +  
Sbjct: 313 FNEFERKGVWKMLSIREFGSDVMMIVTIF--PMED--KESENALKKLVEERFLQLGNLSD 368

Query: 155 ANK--------------------TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
            N                      +      Y+ E +  A     +R   +SF Q N+  
Sbjct: 369 ENSFFRITSLYWQRLANASDPVIYEHIAGAPYIYEIILDA----RFRVSPSSFFQTNSAC 424

Query: 195 NVHMLEWVLAATKGIQGD------------------------------------------ 212
              + + +         D                                          
Sbjct: 425 AAILYKTIAEKCGLCNVDNAAAQEAINADIVTAVFEKDLEEFAYENIDGPKTKIRKLEKV 484

Query: 213 ---------LLELYCGNGNFSLVLARHFDRV-----LAVEIAKPSVEAARYNIAANHV-- 256
                    +L++ CG G   + L +    V     + +EI   +VE A  N   N++  
Sbjct: 485 DTFEQQATLILDICCGTGTIGISLMKLAKTVSRKFLVGIEIIPEAVEDATINAIDNNLPS 544

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT---VGMVQ 313
           ++ K V   ++      R ER      D+   +       +DPPR+G+ +        + 
Sbjct: 545 DSYKFVVGKAENIF--FRLERLLPSWIDLKTVNIIG---VIDPPRAGIHEKVVIGCRALT 599

Query: 314 AYPHILYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVLLVR 364
               I ++SCNP    +++  L              +  +   D FP T H E  V   R
Sbjct: 600 QLKKIAFVSCNPSLAMKNMVDLCRPTSKKFAGEPFKLTSITPVDMFPQTSHCEWVVQFER 659


>gi|225851974|ref|YP_002732207.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis ATCC 23457]
 gi|256264518|ref|ZP_05467050.1| SAM binding domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|225640339|gb|ACO00253.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis ATCC 23457]
 gi|263094851|gb|EEZ18589.1| SAM binding domain-containing protein [Brucella melitensis bv. 2
           str. 63/9]
 gi|326408470|gb|ADZ65535.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis M28]
 gi|326538187|gb|ADZ86402.1| tRNA (Uracil-5-)-methyltransferase [Brucella melitensis M5-90]
          Length = 415

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/325 (21%), Positives = 123/325 (37%), Gaps = 29/325 (8%)

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
           H R RA F        +       Q+ E + I         I A + ++     L     
Sbjct: 115 HTRRRAVFAARKTEKGVLLGFNRHQSHEIIDIVECPVTVPEIIARLDDLREVGALLAPGS 174

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
              F++    ++S   +      +L D+         R AL A   +      +++ +I 
Sbjct: 175 GP-FKLAATLTESGLDLAASGCGKLNDEQ--------RRALTALVIKKDFARLSHEGEII 225

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           ++     ++  +    +        F Q  A     M   VLA   G    + +L+CG G
Sbjct: 226 VE----PKKPLIHFGKVPVPVPPGCFLQATAEAEETMAALVLA-HLGKARRVADLFCGVG 280

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F+L +A     V AVE    ++ A            V+ V+             R+  R
Sbjct: 281 TFALRIAEKSA-VHAVENDAAALAALDR--------GVRHVQG----LKPVSIERRDLFR 327

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTH 339
              +      +  +  DPPR+G ++  + + +     ++ ISCNP +L RDL+IL    +
Sbjct: 328 RPLMTKELLPYNAVVFDPPRAGAEEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGY 387

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            IER+   DQF ++ H+E   +L +
Sbjct: 388 RIERVTPIDQFLWSAHVEAVAVLTK 412


>gi|148559248|ref|YP_001258458.1| RNA methyltransferase [Brucella ovis ATCC 25840]
 gi|148370505|gb|ABQ60484.1| RNA methyltransferase putative, TrmA family [Brucella ovis ATCC
           25840]
          Length = 415

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 122/323 (37%), Gaps = 29/323 (8%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R RA F        +       Q+ E + I         I A + ++     L       
Sbjct: 117 RRRAVFAARKTEKGVLLGFNRHQSHEIIDIVECPVTVPEIIARLDDLREVGALLAPGSGP 176

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
            F++    ++S   +      +L D+         R AL A   +      +++ +I ++
Sbjct: 177 -FKLAATLTESGLDLAASGCGKLNDEQ--------RRALTALVIKKDFARLSHEGEIIVE 227

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
                ++  +    +        F Q  A     M   VLA   G    + +L+CG G F
Sbjct: 228 ----PKKPLIHFGKVPVPVPPGCFLQATAEAEETMAALVLA-HLGKARRVADLFCGVGTF 282

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +L +A     V AVE    ++ A            V+ V+             R+  R  
Sbjct: 283 ALRIAEKSA-VHAVENDAAALAALDR--------GVRHVQG----LKPVSIERRDLFRRP 329

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTI 341
            +      +  +  DPPR+G ++  + + +     ++ ISCNP +L RDL+IL    + I
Sbjct: 330 LMPKELLPYNAVVFDPPRAGAEEQALELAKSKVEKVVAISCNPVTLARDLAILQKGGYRI 389

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           ER+   DQF ++ H+E   +L +
Sbjct: 390 ERVTPIDQFLWSAHVEAVAVLTK 412


>gi|298253358|ref|ZP_06977150.1| SAM-dependent methyltransferase [Gardnerella vaginalis 5-1]
 gi|297532753|gb|EFH71639.1| SAM-dependent methyltransferase [Gardnerella vaginalis 5-1]
          Length = 443

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 146/403 (36%), Gaps = 59/403 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEP----IHYRMRAEFH 50
              L+      Q+  K   +                 N++    +      ++R R E  
Sbjct: 58  GADLIHVSLPGQIRWKAAVIANQFQRLAHMDVSESDVNVERIPGDEELNGFNWRTRMELV 117

Query: 51  IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDY 109
              +G      M  +++ +R+ ID     S  + A+   + +      P  + +L   + 
Sbjct: 118 ADDEGRLS---MRKRESHDRIAIDTMPLASRAVLAVADSLDLWNRSFSPNAQIRLAVPEP 174

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
                 + +       LLD      A+ + D L A    ++      + ++    D    
Sbjct: 175 RV----EGLDFNDKAALLDAIGENYALIVNDELVAGSALLR-----ERVRVAAAGD---- 221

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNF 223
             +   RT  Y      F Q +     H++ +VL   +   G       L +LY G+G F
Sbjct: 222 --SSRARTFDYDVDARGFWQIHRAAPEHLVSYVLGLVRSALGGRTKNTVLWDLYSGSGLF 279

Query: 224 SLVLARHF------------------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           ++ LA                      RVL++E A  +V+ AR NI    ++   IV   
Sbjct: 280 TIPLATLANVGGALSSFAGDSGSAEPARVLSIEGAPIAVKNARRNIGRAGLSR-DIVEAL 338

Query: 266 SKEFTQAMRRER-EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYIS 322
             +  Q +  +  + ++   I         + +DPPR+G        +       ++Y++
Sbjct: 339 EGDVAQTLESQVFKASKSSKIVRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGARAVVYVA 398

Query: 323 CNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           C+P SL RD+       ++++ L  FD +P T H+E  VL+ +
Sbjct: 399 CDPTSLARDVGTFRELGYSVQSLRAFDIYPNTHHVETVVLMSK 441


>gi|24215676|ref|NP_713157.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
 gi|50401762|sp|Q8F201|Y2977_LEPIN RecName: Full=Uncharacterized RNA methyltransferase LA_2977
 gi|24196843|gb|AAN50175.1| tRNA (uracil-5-)-methyltransferase [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 454

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 141/389 (36%), Gaps = 42/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56
                   Y+ Q   K   L +        + +I  +     +  +YR R +F ++    
Sbjct: 81  GCCAQHISYQDQFRYKTSSLLESYKK----DFEIVPTLYPAQKTFYYRNRMDFAVF---P 133

Query: 57  DLYHIMFDQQT-KERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
                  +  + +  + ++  +  S            LI+               L+   
Sbjct: 134 GPIVGQREAGSFRHIVDLETCLIQSKESNEELYRFRNLISKFPNLPYDRKSDSGFLKYFT 193

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD-----ALHARKYQIQLIGRANKTK 159
            +    TS+    +  +   +   +      + L+       L     +   I    + K
Sbjct: 194 LRKAKNTSELMTILTFVEEFKNTIEEKEFENVCLKSLKADHILFCFNRRKGEISATGEIK 253

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I    D   E +        +R   +SF QPN      +L+++          L++L+CG
Sbjct: 254 ILKGMDSYKELVCGKE----FRVPFDSFFQPNPEGFQPILDFIEKEIPDSFDHLVDLFCG 309

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           +G FS + A  F ++  ++  + S+E AR  ++          ++ S      +  +   
Sbjct: 310 SGFFSRIFAHKFLKITGIDSIESSLEIARKQMSL------DFPKIDSSYLKVDLFSKNSS 363

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
           ++LK +   S +   +  DPPR+GL +  +  ++     +  Y+SCNP S   DL  L  
Sbjct: 364 SKLKVLFSSSDK-DVLIADPPRAGLGEFVLDALKDSKVSYFFYVSCNPTSQKSDLWKLKD 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
              I+++ + D +P T H+E    L RK 
Sbjct: 423 FFQIQKILITDPYPQTPHLESVAFLKRKN 451


>gi|45656969|ref|YP_001055.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|51316690|sp|Q72TD6|Y1085_LEPIC RecName: Full=Uncharacterized RNA methyltransferase LIC_11085
 gi|45600206|gb|AAS69692.1| RNA methyltransferase [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 454

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 141/389 (36%), Gaps = 42/389 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS-----EPIHYRMRAEFHIWHDGD 56
                   Y+ Q   K   L +        + +I  +     +  +YR R +F ++    
Sbjct: 81  GCCAQHISYQDQFRYKTSSLLESYKK----DFEIVPTLYPAQKTFYYRNRMDFAVF---P 133

Query: 57  DLYHIMFDQQT-KERMRIDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKL 104
                  +  + +  + ++  +  S            LI+               L+   
Sbjct: 134 GPIVGQREAGSFRHIVDLETCLIQSKESNEELYRFRNLISKFPNLPYDRKSDSGFLKYFT 193

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD-----ALHARKYQIQLIGRANKTK 159
            +    TS+    +  +   +   +      + L+       L     +   I    + K
Sbjct: 194 LRKAKNTSELMTILTFVEEFKNTIEEKEFENVCLKSLKADHILFCFNRRKGEISATGEIK 253

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I    D   E +        +R   +SF QPN      +L+++          L++L+CG
Sbjct: 254 ILKGMDSYKELVCGKE----FRVPFDSFFQPNPEGFQPILDFIEKEIPDSFDHLVDLFCG 309

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           +G FS + A  F ++  ++  + S+E AR  ++          ++ S      +  +   
Sbjct: 310 SGFFSRIFAHKFLKITGIDSIESSLEIARKQMSL------DFPKIDSSYLKVDLFSKHSS 363

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST 337
           ++LK +   S +   +  DPPR+GL +  +  ++     +  Y+SCNP S   DL  L  
Sbjct: 364 SKLKVLFSSSDK-DVLIADPPRAGLGEFVLDALKDSKVSYFFYVSCNPTSQKSDLWKLKD 422

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRKP 366
              I+++ + D +P T H+E    L RK 
Sbjct: 423 FFQIQKILITDPYPQTPHLESVAFLKRKN 451


>gi|42528119|ref|NP_973217.1| RNA methyltransferase [Treponema denticola ATCC 35405]
 gi|51316951|sp|Q73JF6|Y2619_TREDE RecName: Full=Uncharacterized RNA methyltransferase TDE_2619
 gi|41819164|gb|AAS13136.1| RNA methyltransferase, TrmA family, putative [Treponema denticola
           ATCC 35405]
          Length = 404

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/353 (18%), Positives = 117/353 (33%), Gaps = 60/353 (16%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            EK    +Q +                 YR R +F+I  DG        + ++   ++I 
Sbjct: 108 KEKAVFEKQALEKSFFEKSIFVSGPDWDYRARFQFYIDKDGSLSLK---ENKSSGSVKIK 164

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
                   I  L                                                
Sbjct: 165 DCPIAVPAIRNL------------------------------------------------ 176

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
              L+  L       ++   ++  KI    +  D  + +AG+ + +      F Q N  +
Sbjct: 177 ---LKSNLKEYTPNSRIHIFSDGEKIFTQDNAKDCEVRLAGKRIKFN--PLGFFQSNLEM 231

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              ++  +      I   +L+ Y G G FSL        +  VE  K ++  A+ N   N
Sbjct: 232 TEKLINTIFE-YAEISSSVLDFYSGVGTFSLFAYDQAKEIHLVEHNKHALAYAQENFLIN 290

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-- 312
             ++  +       F +      +            +F T+FVDPPR G+D   +  +  
Sbjct: 291 SSSSGIVREKKENGFPKIFYHALDGKNWAKTKESKLKFDTVFVDPPRIGIDKEALSWLCS 350

Query: 313 QAYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                I YISC+P +  RD  S+L + + +E+  LFD +P T H+E   +  +
Sbjct: 351 SGTRQIFYISCDPVTFARDTASLLVSGYKLEKHFLFDFYPQTHHIETLGIFRK 403


>gi|307941543|ref|ZP_07656898.1| 23S rRNA [Roseibium sp. TrichSKD4]
 gi|307775151|gb|EFO34357.1| 23S rRNA [Roseibium sp. TrichSKD4]
          Length = 422

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 132/359 (36%), Gaps = 38/359 (10%)

Query: 14  LAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           LA K +   + +    +  +++         R RA F     G        ++ +   + 
Sbjct: 83  LAWKRELAIKALADRGIEHDVEAVLPCTPGSRRRAVFSATRAGRHTLLGYHEKASNRLVD 142

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I         I   + ++                   L S+ +  +  L     LD A+ 
Sbjct: 143 ISECPVLDPSITKALPDLKKLAG------------GLLPSKGELRLTVLATTAGLDVAFE 190

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER----LTVAGRTLIYRQIENSFT 188
           +        +     Q     +A+  ++ ++ + + E     L + G  L        F 
Sbjct: 191 KADKSYEKKIADLSVQ---AAQADLARLTVNGETLLEIRPPLLDMGGSALT--PPPGGFV 245

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q        +  WVL    G    + +L+ G+G F+L LAR    V AVE   P+++A  
Sbjct: 246 QATKDAEEALSAWVLK-GVGKAKQVADLFAGSGTFALRLARQAK-VHAVEGEAPALKA-- 301

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            + A      +K + M  ++     R       LKD       +  +  DPPR+G     
Sbjct: 302 IDTALRRSQGLKTLTMEKRDL---FRSPLIAEELKD-------YDAVVFDPPRAGAQAQA 351

Query: 309 VGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +  +    ++ +SCNP +  RDL IL    + ++ +   DQF Y+RH+E   +L RK
Sbjct: 352 EQLANSTVKTVVAVSCNPATFARDLRILIDGGYELQSVTPVDQFLYSRHIEVVGILTRK 410


>gi|83953103|ref|ZP_00961825.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp.
           NAS-14.1]
 gi|83842071|gb|EAP81239.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp.
           NAS-14.1]
          Length = 412

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 73/357 (20%), Positives = 130/357 (36%), Gaps = 40/357 (11%)

Query: 15  AEKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             K+  ++  + A  +    +  ++ P   R RA F               + +   + I
Sbjct: 79  DFKLGVVKASLDAHGIETVFKPLQTSPAQSRRRATFAAKRTKKGAMAGFHGRGSDVVIEI 138

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLL-----RAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
               PG  L++     +M  + +   L       K      +T+      +++   + LD
Sbjct: 139 ----PGCQLLD---PAVMGALPIAEKLAVIGTSRKAALAVTVTASRGGLDISVQNGKELD 191

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
              R+    L D+L   +         N   I +    V  R   A  T        +F 
Sbjct: 192 GPLRQELAHLCDSLGLARLTW------NGEVIAMRTPPVQ-RFGAAKVT----PPPGAFL 240

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q        ++  V  A  G    +++L+ G G FSL LA     V AVE        A 
Sbjct: 241 QATPHGEAALVTAVREA-VGEARHVIDLFAGCGTFSLPLADQA-EVHAVEG------DAA 292

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
              A +H   +      S          R+  R   +     +   + +DPPR+G +   
Sbjct: 293 MTAALDHGWRM------STGLKPVTTEARDLFRRPLLPDELAKTDAVVIDPPRAGAEAQI 346

Query: 309 VGMVQAYPHIL-YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             +V+A P +L Y+SCNP +  RD ++L +  +T+  + + DQF ++ H+E      
Sbjct: 347 AEIVKAMPPVLAYVSCNPVTFARDAAVLIAAGYTLNWVQVVDQFRWSSHVELAAQFT 403


>gi|313680187|ref|YP_004057926.1| 23S rRNA m(5)u-1939 methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313152902|gb|ADR36753.1| 23S rRNA m(5)U-1939 methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 427

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 142/365 (38%), Gaps = 42/365 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL  K   +R+ +        ++        P+ YR  A+F +   G   Y +    
Sbjct: 93  YEAQLPVKEGFVRESLARVARLETEVQPIHPSPAPLGYRTAAQFALHPLGGLAYRV---P 149

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + E +R++     +  +    + ++ T  L  L    L     L +   Q  +     R
Sbjct: 150 GSDELVRVEDDPLLAEPLRKA-LRLLNTWPLVGLEEVALR--GSLLTGGVQVGLVGGKAR 206

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRAN---KTKICLDRDYVDERLTVAGRTLIYRQ 182
                +R+ A  L +A  A  +      R      T+    ++ + ER       L  + 
Sbjct: 207 ----HFRKAAEGLVEAGIAGVWWGAADPRGRFRGPTRFLAGKETLLERYG----ELEVQV 258

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              SF Q N      +     A   G     LELY G+G     LA+ + RV   ++ + 
Sbjct: 259 DVVSFAQVNPPAAAAL-YAEAAKLAGTGESALELYGGSGVLGFFLAQGYARVTVTDLNRR 317

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           S+E  R + A   + NV+  R  ++E  +    E                  + VDPPRS
Sbjct: 318 SIEKGRADAARLGLANVRFARADAREAARFGPAEL-----------------VAVDPPRS 360

Query: 303 GLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECG 359
           GL   T+  +       I+Y++C+P +  RD++ L+   + +E +  +D FPYT H+E  
Sbjct: 361 GLARETLAALVELKPEKIIYVACDPATWARDVARLAERGYRLEFVRPYDFFPYTHHVEVL 420

Query: 360 VLLVR 364
             L +
Sbjct: 421 SYLTK 425


>gi|298294381|ref|YP_003696320.1| (uracil-5)-methyltransferase [Starkeya novella DSM 506]
 gi|296930892|gb|ADH91701.1| (Uracil-5)-methyltransferase [Starkeya novella DSM 506]
          Length = 426

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 131/369 (35%), Gaps = 42/369 (11%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHY--RMRAEFHIWHDGDDLYHI--- 61
            + Y+   A K   + + +    +   ++    P H   R RA FH    G         
Sbjct: 89  AEPYQ---AWKRGLVVEALARAGL-ETEVASLIPAHGAGRRRATFHARGTGGAAKAGRDL 144

Query: 62  ----MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                  +++   + ID     +  ++  +    A  ++   L AK   I    +++   
Sbjct: 145 LAVGFAGRRSHAIVAIDACPILAPGLDGALPAAWAVAQVLAPL-AKPLDIQVTATETG-- 201

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
              L          +   I     L  +    +L        + L R+     +  A   
Sbjct: 202 ---LDMDVRGSGPLKPDRIATLAELAGKHRLARLTRHGE---LVLQREPPLLTMGRARVP 255

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
           L       SF Q  A     +   V+ A     G + +L+ G G F L LA    RV A 
Sbjct: 256 L----PPGSFLQATAAGEATLASLVMEA-TEKAGRIADLFSGVGTFGLRLAERA-RVAAY 309

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E + P+VEA     A   V+ +K V   +++            R   + +    F  +  
Sbjct: 310 ESSAPAVEALVK--ATRGVSGLKPVTAEARDLF----------RRPLLPLELKAFDAVVF 357

Query: 298 DPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           DPPR G +     +     P ++ +SC+P +  RD  IL    + +ER+   DQF Y+ H
Sbjct: 358 DPPRQGAEAQVRQLAASKVPLVVGVSCDPVTFARDAQILVEGGYRLERVTPVDQFLYSAH 417

Query: 356 MECGVLLVR 364
           +E   +  R
Sbjct: 418 VELVGVFRR 426


>gi|314971879|gb|EFT15977.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL037PA3]
          Length = 393

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 26/233 (11%)

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYV--DERLTVAGRTLIYRQIENSFTQPNAGINV 196
           R A HA       + +  +  +  D   V  DE +T       ++     F Q + G   
Sbjct: 180 RTAEHAIVMVTSCLTQDPEVSVIADGQLVAGDETMTAHVGQRRWKVGAGGFWQVHPGAAE 239

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            + + V+   K  QGD  L+LYCG G F+ +LA    RV  +E+++ +V  AR N     
Sbjct: 240 ALADAVVGGLKPHQGDEALDLYCGVGLFAGLLADRGVRVRGIEVSRQAVALARRN----- 294

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-- 313
           V          +     M               S +   + +DPPR G   A V  V   
Sbjct: 295 VPGGHFTAGRVERALPRM---------------SAKANIVVLDPPRKGAGKAVVQAVART 339

Query: 314 AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +   I +++C+P +L RDL +     +    +  FD FP T H+E   +L  K
Sbjct: 340 SPRAIAHVACDPAALARDLHLFDVNGYAPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|83942054|ref|ZP_00954516.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp.
           EE-36]
 gi|83847874|gb|EAP85749.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sulfitobacter sp.
           EE-36]
          Length = 412

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 130/357 (36%), Gaps = 40/357 (11%)

Query: 15  AEKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             K+  ++  + A  +    +  ++ P   R RA F               + +   + I
Sbjct: 79  DFKLGVVKASLDAHGIETVFKPLQTSPAQSRRRATFAAKRTKKGAMAGFHGRGSDVVIEI 138

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLL-----RAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
               PG  L++     +M  + +   L       K      +T+      +++   + LD
Sbjct: 139 ----PGCQLLD---PAVMGALPIAEKLAVIGTSRKAALAVTVTASRGGLDISVQNGKELD 191

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
              R+    L D+L   +         +   I +    V  R   A  T        +F 
Sbjct: 192 GPLRQELAHLCDSLGLARLTW------DGEVIAMRTPPVQ-RFGAAKVT----PPPGAFL 240

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q        ++  V  A  G    +++L+ G G FSL LA     V AVE        A 
Sbjct: 241 QATPHGEAALVTAVREA-VGEARHVIDLFAGCGTFSLPLADQA-EVHAVEG------DAA 292

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
              A +H   +      S          R+  R   +     +   + +DPPR+G +   
Sbjct: 293 MTAALDHGWRM------STGLKPVTTEARDLFRRPLLPDELAKTDAVVIDPPRAGAEAQI 346

Query: 309 VGMVQAYPHIL-YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             +V+A P +L Y+SCNP +  RD ++L +  +T+  + + DQF ++ H+E      
Sbjct: 347 AEIVKAMPPVLAYVSCNPVTFARDAAVLIAAGYTLNWVQVVDQFRWSSHVELAAQFT 403


>gi|313837106|gb|EFS74820.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL037PA2]
 gi|314927868|gb|EFS91699.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL044PA1]
 gi|328907328|gb|EGG27094.1| deoxyribonuclease/rho motif-related TRAM [Propionibacterium sp.
           P08]
          Length = 393

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 26/233 (11%)

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYV--DERLTVAGRTLIYRQIENSFTQPNAGINV 196
           R A HA       + +  +  +  D   V  DE +T       ++     F Q + G   
Sbjct: 180 RTAEHAIVMVTSCLTQDPEVSVIADGQLVAGDETMTAHVGQRRWKVGAGGFWQVHPGAAE 239

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            + + V+   K  QGD  L+LYCG G F+ +LA    RV  +E+++ +V  AR N     
Sbjct: 240 ALADAVVGGLKPHQGDEALDLYCGVGLFAGLLADRGVRVRGIEVSRQAVALARRN----- 294

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-- 313
           V          +     M               S +   + +DPPR G   A V  V   
Sbjct: 295 VPGGHFTAGRVERALPRM---------------SAKANIVVLDPPRKGAGKAVVQAVART 339

Query: 314 AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +   I +++C+P +L RDL +     +    +  FD FP T H+E   +L  K
Sbjct: 340 SPRAIAHVACDPAALARDLHLFDVNGYAPRSIRAFDVFPMTHHVEAVAILEPK 392


>gi|126738472|ref|ZP_01754177.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           SK209-2-6]
 gi|126720271|gb|EBA16977.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           SK209-2-6]
          Length = 415

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 122/352 (34%), Gaps = 26/352 (7%)

Query: 15  AEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             KV+ ++  + A  +    +   + P   R RA F +             + +     I
Sbjct: 84  DWKVNVVKTALAAQGLETEFRPIHTSPAQSRRRATFAVRRTKKGAMAGFHGRASDVITPI 143

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    + + +    A        +  L     +T+      V +   + LD     
Sbjct: 144 PDCQLLDPTLISAIALAEALAIAGASRKTPL--SVTVTTSECGLDVLVRQGKPLDG---- 197

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
             +RL  A  A ++ +  +   ++  + +++  +                  SF Q    
Sbjct: 198 -PLRLELAQLAGQHGVTRLTWEDEQ-VAMEQPPIQRFGNAPVCP-----PPGSFLQATTD 250

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               +L  V   T G +  +L+L+ G G F+L LA     V A+E     +         
Sbjct: 251 GEAALLGAVREITTGAK-RILDLFAGCGTFTLPLAERA-EVYALEGEAEMIA-----ALE 303

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                 K +R    E     R       +K    H   ++ + +DPPR+G +     + +
Sbjct: 304 AGWRRGKELRQVKAETRDLFRNPLLPEDMKPFGAH---YEAVVIDPPRAGAEAQVAQLAK 360

Query: 314 AY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           A  P + Y+SCNP S  RD  +L    +++  + + DQF ++ H E      
Sbjct: 361 ARLPVVAYVSCNPISFARDAKVLVGAGYSLNWVQVVDQFRWSAHTELVASFT 412


>gi|15964631|ref|NP_384984.1| putative RNA methyltransferase protein [Sinorhizobium meliloti
           1021]
 gi|307304208|ref|ZP_07583960.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti BL225C]
 gi|307320513|ref|ZP_07599928.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti AK83]
 gi|50401643|sp|Q92RJ3|Y878_RHIME RecName: Full=Uncharacterized RNA methyltransferase R00878
 gi|15073809|emb|CAC45450.1| Putative RNA methyltransferase [Sinorhizobium meliloti 1021]
 gi|306893789|gb|EFN24560.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti AK83]
 gi|306902676|gb|EFN33269.1| (Uracil-5)-methyltransferase [Sinorhizobium meliloti BL225C]
          Length = 415

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 117/314 (37%), Gaps = 35/314 (11%)

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
            +L       Q+   + I      S  I +  +  +  I       A+ F+I  L + + 
Sbjct: 132 KELLLGYNQMQSHHIVSIGECPITSPGIVS-RLATIRKIAAAMASSAEPFRITVLETDTG 190

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLT-- 172
             +                   L+ +   R+  +  +       ++ L+ + V E L   
Sbjct: 191 LDLA---------------FEGLKLSDPQRRSAVDAVLGERGIARVSLNGEIVVEPLKPA 235

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           +    +       +FTQ        M + VLA   G    + +L+ G G F+L +AR   
Sbjct: 236 IDFDGVTVSPPPGAFTQATRPAEDAMAKLVLA-HVGKAKRVADLFAGIGTFALRIARTA- 293

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           RV AVE    +V+A            +     +++        +R+  R   +      F
Sbjct: 294 RVHAVEGDDRAVKA------------LDFAARNTQGLKPVTAEKRDLFRRPMMAQELKAF 341

Query: 293 KTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
             +  DPPR+G +     + +     I  +SCNP +L RDLSIL +  + I  +   DQF
Sbjct: 342 DAVVFDPPRAGAETQCHELARSGVKKIAAVSCNPVTLARDLSILTAAGYRITGVTPIDQF 401

Query: 351 PYTRHMECGVLLVR 364
            ++ H+E    L +
Sbjct: 402 LWSAHVETVATLEK 415


>gi|291296019|ref|YP_003507417.1| (Uracil-5)-methyltransferase [Meiothermus ruber DSM 1279]
 gi|290470978|gb|ADD28397.1| (Uracil-5)-methyltransferase [Meiothermus ruber DSM 1279]
          Length = 412

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 138/376 (36%), Gaps = 46/376 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP---------IHYRMRAEFHIW 52
           S  L ++ Y  QL  K   +++ +        ++   +P         ++YR  A++ + 
Sbjct: 68  SADLPLE-YPYQLPIKQLLVQESLERIGKLQFELAPVQPSPSYTAQPGLYYRTAAQYALH 126

Query: 53  HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
             G   Y      ++ E + I    P   LI   +      +   PL  A L ++  L  
Sbjct: 127 PLGGLAY---RRPRSNELVPI----PHDPLIAEPLQPAFELLSGWPL--ANLEEV-VLRG 176

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI--CLDRDYVDER 170
              +  V + +   +    R      +  +      +     + K +    L        
Sbjct: 177 SIYEQKVQIGF---IGGHARHFQKTAQALVQEGIAGVVWGASSPKGRFRGPLQHLAGTPH 233

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           L      ++      SF Q N      + +      +  +   +ELY G+G  SL LA  
Sbjct: 234 LLEDFGGVLSSVNVQSFAQVNPRAAGLLFQEAAQVVEPGR-KAVELYAGSGVLSLHLAHR 292

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           F  V+A+EI   +V+    +     V N+  VR  ++   + +                 
Sbjct: 293 FTEVVAIEINPSAVKRGEADRDRLGVQNLVFVRDDARVLGRHLPA--------------- 337

Query: 291 RFKTIFVDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALF 347
               + VDPPR+GL    +  +++  P  ILYI+C+P +  RD+  L    + +     +
Sbjct: 338 --DLVMVDPPRAGLAPEVLAGLLEKKPRQILYIACDPATWARDIGRLVQGGYRLRFARPY 395

Query: 348 DQFPYTRHMECGVLLV 363
           D +P+T H+E   LL 
Sbjct: 396 DFYPFTHHVEVLSLLS 411


>gi|308177784|ref|YP_003917190.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307745247|emb|CBT76219.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 440

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 129/335 (38%), Gaps = 40/335 (11%)

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           + +R R  + +   G+     M   ++ E + I         I A  +  +    +E   
Sbjct: 136 LGWRTRMSYSVDAQGNL---AMSAFRSNELISISQMPLAHPAIEATGLYSVDYSGIE--- 189

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT-- 158
                +++   S  D   V ++     D A  + A +  + ++   +       A+    
Sbjct: 190 -----RVEAAVSSQDDRTVLILLAEARDGAAAKVAKQFPEGVNVASFSQHGGSAADGKGS 244

Query: 159 -KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
            +      ++ E++        +R     F Q +      +   V+  T+   G+ + +L
Sbjct: 245 LQTLAGSAHLIEKVL----GEKFRITGEGFWQVHREAASLLSSRVIELTEPAAGEQIADL 300

Query: 217 YCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           Y G G FS+ LA+      RV ++E A  +   A+ N+     +   ++R   +   + +
Sbjct: 301 YAGAGLFSVPLAKAVGTGGRVFSIEGAPGTHADAKKNLR--DYSQATVIRGRVERVLRQV 358

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRD 331
                         H      + +DPPR+GL+      + +     I Y+SC+P +  RD
Sbjct: 359 -------------AHDATLDAVVLDPPRTGLEKQVAAELASSGVSRICYVSCDPAAFARD 405

Query: 332 LSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            + L    + ++ L + D +P+T HME   L VR+
Sbjct: 406 TARLMGRGYELDHLEIHDLYPHTHHMESIGLFVRR 440


>gi|239831306|ref|ZP_04679635.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Ochrobactrum
           intermedium LMG 3301]
 gi|239823573|gb|EEQ95141.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Ochrobactrum
           intermedium LMG 3301]
          Length = 413

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 125/356 (35%), Gaps = 36/356 (10%)

Query: 16  EKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K + +   +           +   +P   R RA F        +        + E + I
Sbjct: 88  WKRELVVSALKGRGIDTEVAPLVACQPRT-RRRAVFAARKTEKGVLLGFNRHLSHEIIDI 146

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I A + ++   +       +K F++    + S   +       +LDD+ R 
Sbjct: 147 VECAVTVPEIIARLDDLRE-VGALIAPGSKPFKLAATLTASGLDLAASGCG-VLDDSQRR 204

Query: 134 CAIRL--RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
               L  +       ++ ++I    K  I   +  V                   F Q  
Sbjct: 205 ALTALVMKKGFARLSHEGEIIVEPKKPLIHFGKVPVP-------------VPPGCFLQAT 251

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 M++ VL    G    + +L+CG G F+L +A     V AVE    ++       
Sbjct: 252 EDAEEAMVQLVLD-HVGKSKRVADLFCGVGTFALRIAEKSA-VHAVENDALALA-----A 304

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               V +V+                R+  R   +      +  +  DPPR+G ++  + +
Sbjct: 305 LDRGVRHVQG-------LKPVSVERRDLFRRPLMPKELLPYNAVVFDPPRAGAEEQALEL 357

Query: 312 VQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +     ++ +SCNP +L RDL+IL    + + R+   DQF ++ H+E    LV+K
Sbjct: 358 AKSKVEKVVAVSCNPVTLARDLAILVKGGYRVTRVTPIDQFLWSPHVEAVATLVKK 413


>gi|326918818|ref|XP_003205683.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Meleagris
           gallopavo]
          Length = 662

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 111/349 (31%), Gaps = 67/349 (19%)

Query: 42  HYRMRAEFHIWHDGDDL-----YHIMFDQQTKER-MRIDYFMPGSLLINALMIEMMATIR 95
            YR ++ F +    D        ++   +      +R D+     L    +       IR
Sbjct: 355 GYRNKSTFSVNRGPDGNPKTVGLYVGTGRGQNIVCVRTDHMKNIPLKHKQVAQCYEQFIR 414

Query: 96  LEPLLRAKLFQID-------YLTSQSDQAIVTLIYH------------RLLDDAWRECAI 136
             PL    LF            TSQ    +  + +H            + L   +  C  
Sbjct: 415 RSPLGSCILFHEGGHWRELVVRTSQHGHTMAVVTFHPQHLGQEALAAQKALLKEFFTCGP 474

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
               AL +  +Q   + R +  +      + +  +      L +R   ++F Q N     
Sbjct: 475 GAACALTSLYFQESTMTRCSHEQSPFQLLHGEPHIFEDVLDLTFRISPDAFFQVNTSGAE 534

Query: 197 HMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            + + V   ++     +L ++ CG G   L LARH  +V+ VEI + +VE AR+N A N 
Sbjct: 535 VLYQAVRELSQAATNTVLLDVCCGTGTIGLSLARHVSKVIGVEIVQKAVEDARWNAAFNG 594

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++N +     ++     +                 + + +    PR              
Sbjct: 595 ISNCEFHSGKAEAVLPELLIPG-----------GIQGQAVLPPNPRK------------- 630

Query: 316 PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                             +            FD FP+T H E  +LL R
Sbjct: 631 -----------------KLEGEPFAPTLAVPFDMFPHTAHCELVLLLTR 662


>gi|256375660|ref|YP_003099320.1| deoxyribonuclease/rho motif-related TRAM [Actinosynnema mirum DSM
           43827]
 gi|255919963|gb|ACU35474.1| deoxyribonuclease/rho motif-related TRAM [Actinosynnema mirum DSM
           43827]
          Length = 411

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 116/364 (31%), Gaps = 61/364 (16%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIH---YRMRAEFHIWHDGDDLYHIMFDQQT 67
            Q   K   + + +        ++     P     +R R    +  DG   +       +
Sbjct: 96  AQRDLKAAVVAEQLQRLAGVEREVVVEPLPGGHRDWRTRLRLAVGRDGKPGFRGHH---S 152

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
            + + +D+ +  +   +AL   +    R                    +  VTL      
Sbjct: 153 HDVIPVDHCVIAAP--HALDDVLDRAWRP-----------------GSELAVTLDSTGKQ 193

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
                  A R               G     +   DRD++                 + F
Sbjct: 194 HVTEIAPAQRRGGRRPTPGPSKLRRGSGGAVERAADRDWL--------------VRADGF 239

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPS--- 243
            Q +          V        GD   +LY G G F+ VLA       +VE+ + +   
Sbjct: 240 WQVHPHAADTFARVVGEWAACEPGDHAWDLYGGAGLFASVLAAQVGETGSVEVVESATNA 299

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V   +   A   +  VK      ++             +            + +DPPR G
Sbjct: 300 VRDGQR--ALADLPQVKWHVGRVED------------SVTRAPFTDRSPSVVVLDPPRKG 345

Query: 304 LDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGV 360
              A +  V A     ++Y++C+P +L RD+++L+   + + +L  FD FP T H+EC  
Sbjct: 346 AGAAVLDAVAARRPARVVYVACDPAALARDVALLAGHGYRLAQLRAFDAFPMTHHVECVA 405

Query: 361 LLVR 364
           L  R
Sbjct: 406 LFTR 409


>gi|163732989|ref|ZP_02140433.1| RNA methyltransferase, putative [Roseobacter litoralis Och 149]
 gi|161393524|gb|EDQ17849.1| RNA methyltransferase, putative [Roseobacter litoralis Och 149]
          Length = 408

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 134/353 (37%), Gaps = 32/353 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             KVD +RQ + +  +  +  +I  S P   R RA F               + +   + 
Sbjct: 79  DWKVDVVRQALSSHNLETVFREIETSPPKS-RRRAGFAARRTKKGAMVGFHGRASDTIIP 137

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           ++        +      +   + +    R     +     +S    V     + LD   R
Sbjct: 138 VERCEILDPGVLQ-GARIAEELAIAGASRKTALAVSVTLGKSGLD-VAASKGKPLDGPLR 195

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           +    + +A    +        A +T    + D    R++V+           +F Q   
Sbjct: 196 QRLAAICEAEVIARLSWDDEIVAVRTPPLYEFD----RISVSP-------PPGAFLQATL 244

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +L  V   T+G  G +++L+ G G F+L LARH   V AVE     +  A  +  
Sbjct: 245 HGEAALLSAVREITRG-AGRIVDLFAGCGTFALPLARH-SEVHAVEGDGDMI--AALDAG 300

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
             H + +K V   +++            R   + +   +   + +DPPR+G +   V + 
Sbjct: 301 WRHADGLKNVTTETRDLF----------RRPLVPMELTKVDAVVLDPPRAGAEAQVVELA 350

Query: 313 QAY-PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           +A  P + Y+SCNP +  RD ++L    + ++ + + DQF ++ H+E      
Sbjct: 351 KADVPRLAYVSCNPVTFARDAAVLCAAGYVLDWVQVVDQFRWSAHVELAASFT 403


>gi|251791917|ref|YP_003006637.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533304|gb|ACS96550.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 391

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 137/400 (34%), Gaps = 57/400 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y  QL +K   L+Q +       +   + F+S    +R +A+  +    +  
Sbjct: 14  SCQWLETPYAIQLEQKTTHLQQQLHGLDKSHLTWFEPFQSPVAQFRNKAKMVVSSAVERP 73

Query: 59  YHIMFDQQTKERMRIDYF-------------MPGSLLINALMIEMMATIRLEPLLRAKLF 105
              +       +  +D                     I    +      + +  L+  L 
Sbjct: 74  ILGILPNLLDPQSAVDLCDCPLYPQRFQALFPILKDFIARAGLVPYNVAKQKGELKHILL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-----RKYQIQLIGRANKTKI 160
                + Q     V    ++L     +     LR+ L          Q Q       +K 
Sbjct: 134 TESQHSHQLMLRFVLRSENKL--PLIQRELAELRNKLPQLAVISVNIQPQNAAILEGSK- 190

Query: 161 CLDRDYVDE--RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELY 217
                ++ E   L+     +        F Q N  +   +        K +    L +L+
Sbjct: 191 ---EIFLTEQHTLSETFNDIPLFIRPQGFFQTNPSVAEGLYGTAQQWIKDLPIRRLWDLF 247

Query: 218 CGNGNFSLVLARHFD--------RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
           CG G F L   +            +  +EI+  ++ AA  +     ++  V    + +  
Sbjct: 248 CGVGGFGLHCLKALQTKNSNQKIHLTGIEISASAIAAATQSAEELGLHEQVNFQSLDAAN 307

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPD 326
           F            L  +D    +   + V+PPR G+  A    + +  PH ILY SCN +
Sbjct: 308 FA-----------LNQVD----KPDLVIVNPPRRGIGKALSEYLNEMQPHFILYSSCNAE 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           ++ +DL  L+  + + ++ LFD FP+T H E  VLL R+ 
Sbjct: 353 TMSKDLQSLTH-YQLGKIQLFDMFPHTSHYEVLVLLKRRD 391


>gi|126730074|ref|ZP_01745886.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sagittula stellata
           E-37]
 gi|126709454|gb|EBA08508.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Sagittula stellata
           E-37]
          Length = 409

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 127/353 (35%), Gaps = 43/353 (12%)

Query: 16  EKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            KVD + + +     +     I  S P   R RA F               + +   + +
Sbjct: 83  WKVDVVARALAAQGIETEMRPIVTSPPRS-RRRAGFSARRTKKGALAGFHAKGSDVVIAV 141

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    + A +  +          +++L     +T       V +   + +DDA+R 
Sbjct: 142 PDCQLVRPALAAALPMVEELAVAGTSRKSEL--SVQVTETLGGLDVVVTGGKPVDDAFRV 199

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR-----QIENSFT 188
               L     A+K+ +  +               DE LT+   +  +          +F 
Sbjct: 200 TLAGL-----AQKHDVARLAWD------------DEVLTLRPPSHRFGDAEVVPPPGAFL 242

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q  A     +L  V  A +G    + +L+ G G F+L LA     V A E      +AA 
Sbjct: 243 QATAEGEAALLAGVQEALEGCSH-MADLFAGCGTFALPLASRGK-VHAAEG-----DAAM 295

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                      K +R  + E     R     + L        RF  + +DPPR+G +   
Sbjct: 296 ARALDKGWRQGKGLRHVTHETRDLFRNPLLPDEL-------SRFDGVVIDPPRAGAEAQV 348

Query: 309 VGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
             +  A  P I Y+SCNP S  RD + L +  +T++ + + DQF ++ H+E  
Sbjct: 349 AELASARVPRIAYVSCNPVSYARDAARLIAAGYTLDWVQVVDQFRWSTHVELV 401


>gi|296425067|ref|XP_002842065.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638322|emb|CAZ86256.1| unnamed protein product [Tuber melanosporum]
          Length = 522

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 132/392 (33%), Gaps = 72/392 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS------EPIHYRMRAEFHIWHDG 55
                +  Y +QL  K + + +    F   + ++          P+ Y  R +     DG
Sbjct: 156 GCQFQMLPYAKQLEHKRNVILKAYDNFSNLDPKLLPGIGDTVGSPLQYSYRTKLTPHFDG 215

Query: 56  DD----------LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF 105
                              +  ++ + I+    G+ ++   +            +   L 
Sbjct: 216 PRRGGFKAGAPTPDIGFMIKGRRQVLDIEDCPIGTDILRKGIK------TARKYVEENLH 269

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
                 +     ++     R   +   E   +  +                K  I  +  
Sbjct: 270 TYKRGAT----ILLRESTTRRPREEGEEGNTKWVE---------------EKECITDNNA 310

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--------LLELY 217
              E +        +     +F Q N  I   +   VL  +              L++ Y
Sbjct: 311 QTTEYIG----DYKFVNPAGAFFQNNNSILPALHYPVLTTSPDGTRTTISTSPKYLVDAY 366

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG+G F+++  ++   V+ V+IA  S+  A  N AAN++ N + +  +++   ++     
Sbjct: 367 CGSGLFTILCGKNLTSVIGVDIAADSIAYASSNAAANNIENARFIAGNAETIFES----- 421

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL 335
                  ID  S     I  DPPR G D   +  +       ++Y+SCN  +  RDL  +
Sbjct: 422 -------IDFPSTETSVII-DPPRKGCDKPFLDQLLEFKPKRVVYVSCNVHTQARDLGYI 473

Query: 336 ----STTHTIERLALFDQFPYTRHMECGVLLV 363
                + + ++ +  FD FP T H+E   +L 
Sbjct: 474 LNGKGSGYRVDEIRGFDFFPQTHHVEGVAILT 505


>gi|308234999|ref|ZP_07665736.1| TRAM domain protein [Gardnerella vaginalis ATCC 14018]
 gi|311114960|ref|YP_003986181.1| hypothetical protein HMPREF0421_21076 [Gardnerella vaginalis ATCC
           14019]
 gi|310946454|gb|ADP39158.1| hypothetical RNA methyltransferase [Gardnerella vaginalis ATCC
           14019]
          Length = 474

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 147/410 (35%), Gaps = 67/410 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEP----IHYRMRAEFH 50
              L+      Q+  K   +          ++       +    +      ++R R E  
Sbjct: 84  GADLIHVSLPGQIRWKASVIANQFQRLAHMDIADSDITVERMPGDEELNGFNWRTRMELV 143

Query: 51  IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDY 109
              +G      M  +++ +R+ ID     S  + A+   + +      P  + +L   + 
Sbjct: 144 ADDEGRLS---MRKRESHDRIAIDTMPLASRAVLAVADSLDLWNRSFSPNAQIRLAVPEP 200

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
                D          LL       A+ + D L A    +       + ++ +D D    
Sbjct: 201 RVDGFD----FNDKAALLSAIGENYALIVNDELVAGSALLC-----ERVRVAVDGD---- 247

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNF 223
             +   RT  Y      F Q +     H++ +VL   +   G       L +LY G+G F
Sbjct: 248 --SSRMRTFDYDVDARGFWQIHRAAPEHLVNYVLGLVRSALGGRTKNTVLWDLYSGSGLF 305

Query: 224 SLVLARHF------------------------DRVLAVEIAKPSVEAARYNIAANHV--N 257
           ++ LA                            RVL++E A  +V+ AR NI    +  +
Sbjct: 306 TIPLATLANVGGDSSSAVGALGTTGTFGSAEPARVLSIEGAPIAVKNARRNIGRAGLSRD 365

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AY 315
            V+ ++    +  ++  +  + ++   I         + +DPPR+G        +     
Sbjct: 366 VVEALQGDVAQTLES--QVFKASKSSKIVRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGA 423

Query: 316 PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
             ++Y++C+P SL RD+       ++++ L  FD +P T H+E  VL+ R
Sbjct: 424 RAVVYVACDPTSLARDVGTFREFGYSVQSLRAFDLYPETHHVESVVLMSR 473


>gi|301619777|ref|XP_002939250.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog [Xenopus
           (Silurana) tropicalis]
          Length = 384

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 115/341 (33%), Gaps = 61/341 (17%)

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
            YR ++ F +    D     + +     R R    +    LIN           +    +
Sbjct: 87  GYRNKSSFSVNRGPDGDPKTVGNFVGTGRDRNIVCVRADHLIN-----------IPEKHK 135

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
                            V   Y   +  +     +   D  H R   ++   +     I 
Sbjct: 136 H----------------VARCYEDFIHQSPLAPCLLFYDGGHWRDVVVRTNKKGETMAIV 179

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGN 220
                   ++      L  R    SF Q N      +   +     +   G LL+L CG 
Sbjct: 180 TFHPQDLPQVL----DLRLRVSPTSFLQVNTPAAETLYTALGNMIQRHAHGTLLDLCCGT 235

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM--RRERE 278
           G   L LA +F  V+ VE+ + +V  AR+N   N + N + +   +++    +   +++E
Sbjct: 236 GAIGLSLAGYFKNVIGVEMVEDAVLDARWNADFNGIENCQFLSGRAEKLLPNLLSYKQKE 295

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLC-RDL-- 332
            + L               +PPR+GL    V  ++    I   L+++C P+    R+L  
Sbjct: 296 LSVLA------------VANPPRAGLHPRVVRALRNCEDIRTLLFVTCKPEGEATRNLTE 343

Query: 333 ---------SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                     IL      +     D FP+T H E  +LL R
Sbjct: 344 LCCAPSLEQKILGEAFVPQEALGVDLFPHTTHCELALLLTR 384


>gi|330883013|gb|EGH17162.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 171

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 6/175 (3%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1   MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61  IMFDQQTKE-RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
            MF        + ++     S  INALM  +       P L  KLFQ+D+LT+ +  A++
Sbjct: 61  AMFAPGDNRTPILLEGLPIASERINALMPVLRERWEASPTLNHKLFQVDFLTTLAGDAMI 120

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           T+ YHR LD  W+  A +      A +  + LIGR+   K+ + +DYV E+L VA
Sbjct: 121 TMCYHRPLDAEWQAAAEQ-----LAAELNVSLIGRSKGQKLIIGQDYVTEKLDVA 170


>gi|325474668|gb|EGC77854.1| hypothetical protein HMPREF9353_00701 [Treponema denticola F0402]
          Length = 404

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 117/353 (33%), Gaps = 60/353 (16%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            EK    +  +                +YR R +F+I  DG        + ++   ++I 
Sbjct: 108 KEKAVFDKPALEKSFFEKTIFVSGPDWNYRARFQFYIDEDGSLSLK---ENKSSGSVKIK 164

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
                   I  L                                                
Sbjct: 165 DCPIAVPAIRNL------------------------------------------------ 176

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
              L+  L       ++   ++  KI    +  D  + +AG+ + +      F Q N  +
Sbjct: 177 ---LKSNLKEYAPNSRIHIFSDGEKIFTQDNAKDCEVRLAGKRIKFN--PLGFFQSNLEM 231

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              ++  +      I   +L+ Y G G FSL        +  VE  K ++  A+ N   N
Sbjct: 232 TEKLINTIFE-YAEISSSVLDFYSGVGTFSLFAYDQAKEIHLVEHNKHALAYAQENFLIN 290

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-- 312
             ++  +       F +      +            +F T+FVDPPR G+D   +  +  
Sbjct: 291 SSSSGIVREKKENGFPKIFYHALDGKNWAKTKESKLKFDTVFVDPPRIGIDKEALSWLCS 350

Query: 313 QAYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                I YISC+P +  RD  S+L + + +E+  LFD +P T H+E   +  +
Sbjct: 351 SGTRQIFYISCDPVTFARDTASLLVSGYKLEKHFLFDFYPQTHHIETLGIFRK 403


>gi|188584015|ref|YP_001927460.1| (Uracil-5)-methyltransferase [Methylobacterium populi BJ001]
 gi|179347513|gb|ACB82925.1| (Uracil-5)-methyltransferase [Methylobacterium populi BJ001]
          Length = 437

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 116/337 (34%), Gaps = 39/337 (11%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R   H+          +   ++   + ID+       ++       A        R  
Sbjct: 123 RRRITLHVREIEGRAKAGLMAARSHALVAIDHCPITVPGLHRAPAVAEALAAPLGHGRKP 182

Query: 104 LFQIDYLTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           L   D   + +   + + +  H  + +  R    RL   L   +  I             
Sbjct: 183 L---DIAATATVTGLDIDIRGHGPVSEGVRGVLTRLAGELDLARLSIH------------ 227

Query: 163 DRDYVDERLTVAGRTLIYR--QIENSFTQPNAGINVHMLEWVLAATKGIQG---DLLELY 217
             D V ER          R      SF Q        +   VL A    +     + +L+
Sbjct: 228 -GDVVVERRPPEIGEGPARRVPPPGSFLQATQAGEATLTALVLEAMDEGKAKVRRVGDLF 286

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG+G F+L LA     V A E    ++ A      A         R++++         R
Sbjct: 287 CGSGPFALALAAGGREVHAAEGEAAAITALTRAYRA----GAGYARITAE--------AR 334

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL- 335
           +  R   +         +  DPPR+G +     + +   P ++ ++C+P +  RD + L 
Sbjct: 335 DLFRRPLLGPELDALDAVVFDPPRAGAEAQARRIAESKVPLVVGVACDPGTFARDAATLI 394

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLV---RKPSGW 369
           +  + +ER+   DQF ++ H+E   +     RKP+G 
Sbjct: 395 TGGYRLERVTPVDQFAWSAHVELVGVFRKAARKPAGK 431


>gi|119961512|ref|YP_947547.1| tRNA (Uracil-5-)-methyltransferase [Arthrobacter aurescens TC1]
 gi|119948371|gb|ABM07282.1| putative tRNA (Uracil-5-)-methyltransferase [Arthrobacter aurescens
           TC1]
          Length = 454

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 128/377 (33%), Gaps = 64/377 (16%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIH-----YRMRAEFHIWHDGDDLYHIMF 63
           ++Q A K D L + +      +L  ++      H     +R RA F +   G      M 
Sbjct: 115 QRQRALKADVLAEQLKRLAGLDLTTEVEAVGDQHDGGLGWRTRASFAVTPKG---RLGMH 171

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
             ++   + I         +N L                KL+ +D       +  V    
Sbjct: 172 AHRSDVVLPIKEMPLALTGVNEL----------------KLWDLDLSGIARVEVAVPANG 215

Query: 124 HRLL---DDAWRECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLTVAGRT 177
            R L            RL   L    + + +          L    R +V E        
Sbjct: 216 SRPLILLAPEESTSPKRLHSILSQLPHHVSVASFDPSKGEVLQLRGRTWVQET----AAG 271

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKG-----IQGDLLELYCGNGNFSLVLARHFD 232
             YR     F Q +      +++ V     G         + +LY G G F+  LA    
Sbjct: 272 HEYRVTGEGFWQIHKDAPDTLVDAVTGYLSGGGYLQPGATVADLYAGAGLFTAPLADVVG 331

Query: 233 ---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               VL+VE A  +   AR N+  +    V+IV+   ++      R              
Sbjct: 332 VTGSVLSVEGAPGTSRDARKNL--HGEAQVEIVQGRVEKVLHQRAR-------------- 375

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLAL 346
             F ++ +DPPR+G   A V  + A     I Y+SC+P S  RDL         +E L  
Sbjct: 376 -SFDSVVLDPPRAGAGKAVVKQLMATGPRAIAYVSCDPASFARDLGYFHQGGWRLESLRA 434

Query: 347 FDQFPYTRHMECGVLLV 363
           FD +P T H+E   L+V
Sbjct: 435 FDLYPNTHHLETVGLMV 451


>gi|145640626|ref|ZP_01796209.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae R3021]
 gi|145274552|gb|EDK14415.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae
           22.4-21]
          Length = 239

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 90/250 (36%), Gaps = 33/250 (13%)

Query: 132 RECAIRLRDALHARKYQIQLIGR-----ANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           RE    L    H     I L  +       + +I L      + L      +        
Sbjct: 6   RELPKLLEKLPHLEVISINLQPQHAAILEGEQEIFLTE---QQFLPENFNGIPLFIRPQG 62

Query: 187 FTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLA-------VE 238
           F Q N  +   +              +L +L+CG G F L  A+              +E
Sbjct: 63  FFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCGVGGFGLHCAKALQEKWGKPIKLTGIE 122

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+  ++ AA  +     + +V    + +    +              + +  +   + V+
Sbjct: 123 ISSSAILAASNSAKILGLEHVNFQSLDAASVIE--------------NKNENKPDLVIVN 168

Query: 299 PPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           PPR G+       + Q  PH ILY SCN  ++ +DL  L+  +   ++ LFD FP T H 
Sbjct: 169 PPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLTC-YKPLKIQLFDMFPQTSHY 227

Query: 357 ECGVLLVRKP 366
           E  VLL RK 
Sbjct: 228 EVLVLLERKK 237


>gi|309811689|ref|ZP_07705467.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Dermacoccus
           sp. Ellin185]
 gi|308434301|gb|EFP58155.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Dermacoccus
           sp. Ellin185]
          Length = 427

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 135/379 (35%), Gaps = 87/379 (22%)

Query: 11  EQQLAEKVDRLRQMMLAFQV-------PNLQIFR-------SEPIHYRMRAEFHIWHDGD 56
           + Q   K D +R+ +            P+  +         +E + +R R E  +    D
Sbjct: 115 DAQRRLKADVVREQLARIAKLDVDARFPDFTVEALPGDGPIAEGLRWRTRLELAV----D 170

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
                + + ++   + ID               ++A     P L  +             
Sbjct: 171 GGVAGLREHRSHRLVVIDDC-------------LIADAGFTPALHERF------------ 205

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
                       DA       +R ++      I+L     +T        V E +  A  
Sbjct: 206 ------------DAGVTGFDLVRPSVGDDIIGIELPQPKGET-----TPTVREVVESAHG 248

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD--- 232
           +  +      F Q + G     L+ V+  T    G+  L+LYCG G F+  LA       
Sbjct: 249 SAEFDVSARGFWQVHPGAAATFLDAVIDETDPQPGESALDLYCGVGLFTRALADLVGPDG 308

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           RV+ VE    +V+ AR N+      +V +V    ++                  +   R 
Sbjct: 309 RVVGVEADADAVDHARTNMG--GARHVDLVTSPVEKAR----------------LPLERA 350

Query: 293 KTIFVDPPRSGLDDATVG-MVQAYPHIL-YISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
             + +DPPR+G     V  +V   P ++ Y++C+P +L RDL    S  + +  L  FD 
Sbjct: 351 DVVVLDPPRAGAGRDVVATIVGLAPRVVTYVACDPAALARDLGYFVSHGYELTNLRGFDA 410

Query: 350 FPYTRHMECGVLLVRKPSG 368
           FP T+H+EC   L  +P G
Sbjct: 411 FPMTQHVECIATL--RPRG 427


>gi|209548166|ref|YP_002280083.1| (uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209533922|gb|ACI53857.1| (Uracil-5)-methyltransferase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 416

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 138/356 (38%), Gaps = 35/356 (9%)

Query: 15  AEKVDRLRQMML-AFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           A K   +   +      P++ +I  + P   R R  F       D+       ++   + 
Sbjct: 90  AFKRQLVIDALRSKGLTPDVGEIVAARP-GERRRVVFAARKTEKDMLIGFNQAESHHIVA 148

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I+     S  I A +  + A         A+ F++  L + S   I      + L DA R
Sbjct: 149 IEECPISSAGIIARLPAIRAIAAALATN-AEPFRVSVLETLSGLDIAVDEV-KKLSDAQR 206

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLTVAGRTLIYRQIENSFTQP 190
                      A +  + L G A    + L+ + + E  +  V    +        FTQ 
Sbjct: 207 RK---------AVETVLGLRGIAR---VSLNGEILIEPSKPLVDFGGIQVSPPPGGFTQA 254

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                  M E VLA   G    + +L+ G G FSL LAR   RV AVE    ++ A  + 
Sbjct: 255 TKPAEEAMAELVLA-HAGKAKRIADLFAGAGTFSLRLAR-IGRVHAVEAEAKALAALDH- 311

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            AA +   +K V +  ++  +     +EF            +  +  DPPR+G +     
Sbjct: 312 -AARNAPGLKPVTIERRDLFRRPLMTQEFK----------PYDAVIFDPPRAGAEFQCKE 360

Query: 311 MVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           + ++    I  +SCNP +L RDL+IL    + I  +   DQF +T H+E    L +
Sbjct: 361 LARSSVKKIAAVSCNPLTLARDLAILVEGGYRITGVTPIDQFLWTSHVEVVATLEK 416


>gi|283782980|ref|YP_003373734.1| TRAM domain protein [Gardnerella vaginalis 409-05]
 gi|283441528|gb|ADB13994.1| TRAM domain protein [Gardnerella vaginalis 409-05]
          Length = 471

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/406 (18%), Positives = 149/406 (36%), Gaps = 62/406 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-------QVPNLQIFRSEP----IHYRMRAEFH 50
              L+      Q+  K   +                 +++    +      ++R R E  
Sbjct: 84  GADLIHVSLPGQIRWKASVIANQFQRLAHMDVADNDVSVERMPGDEELNGFNWRTRMELV 143

Query: 51  IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDY 109
              +G      M  +++ +R+ ID     S  + A+   + +     EP  + +L   + 
Sbjct: 144 ADDEGRLS---MRKRESHDRIAIDTMPLASRAVLAVADSLDLWNREFEPNSQIRLAVPEP 200

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
                 + +       LLD      A+ + D L A    ++      + ++ +D D    
Sbjct: 201 RV----EGLDFNDKAALLDAIGENYALIVNDELVAGSALLR-----ERVRVAVDGD---- 247

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNF 223
             +   RT  Y      F Q +     H++ +VL   +   G       L +LY G+G F
Sbjct: 248 --SSRMRTFDYDVDARGFWQIHRAAPEHLVNYVLGLVRSALGGRSKNTVLWDLYSGSGLF 305

Query: 224 SLVLARHF---------------------DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           ++ LA                         RVL++E A  +V+ AR NI    ++   +V
Sbjct: 306 TIPLATLANVGGDSYGAYDAVGAFGAAEPARVLSIEGAPIAVKNARRNIGRAGLSR-DVV 364

Query: 263 RMSSKEFTQAMRRER-EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--IL 319
                +  Q +  +  + ++   I         + +DPPR+G        +       ++
Sbjct: 365 EALEGDVAQTLESQVFKASKSSKIVRRFAHPDVVVLDPPRAGAKAQVCKQIAKSGARSVV 424

Query: 320 YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           Y++C+P SL RD+   S   ++++ L +FD +P T H E   LL +
Sbjct: 425 YVACDPTSLARDVGTFSELGYSVQSLRVFDIYPNTHHTESVALLYK 470


>gi|254510029|ref|ZP_05122096.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacteraceae bacterium
           KLH11]
 gi|221533740|gb|EEE36728.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacteraceae bacterium
           KLH11]
          Length = 409

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/357 (21%), Positives = 126/357 (35%), Gaps = 34/357 (9%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             KV  +R  +       P   I  S P   R RA   +             + +     
Sbjct: 80  DWKVAVVRNALAAQGLDAPMRPIHTS-PERSRRRATIAVRRTKKGTLAGFHGRASDTITE 138

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I         + A +    A   L    +  L     L+       V     + LD    
Sbjct: 139 IGDCHLLHPSLIAAIPVAEALALLGGSRKGVLAVTLTLSEAGLDVAV--KGGKPLDGP-- 194

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
                L  AL     Q  L   + + ++   R    +R   AG          +F Q   
Sbjct: 195 -----LELALAQATEQHGLARLSWEGEVIAMRAPPIQRFGAAGVI----PPPGAFLQATK 245

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +L+ V  A +G +  +++L+ G G FSL LA     V AVE      +A      
Sbjct: 246 DGEQALLKAVFEAVRGAKH-VVDLFAGCGTFSLPLAETA-EVHAVEGEAEMTQALDQ--G 301

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +K +   +++     RR    + LK        F  + +DPPR+G +     + 
Sbjct: 302 WRKAQGLKQITTEARDL---FRRPLMPDELKA-------FDAVVLDPPRAGAEAQVAELA 351

Query: 313 QAYPHIL-YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV--RK 365
           QA+P ++ Y+SCNP +  RD   L +  +T+E + + DQF ++ H E        RK
Sbjct: 352 QAHPPVIAYVSCNPVTFARDAKTLVNAGYTLEWVQVVDQFRWSSHTELAARFTLNRK 408


>gi|219110012|ref|XP_002176758.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411293|gb|EEC51221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 695

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 97/277 (35%), Gaps = 25/277 (9%)

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167
           ++   + ++ +  L    L  +      +++    +     +      +  +    + ++
Sbjct: 415 EHFEKEKERLVALLKGAELQTEVAELQPLKVTSIFYQEFEGLSNPKPDHPVQHVYGKQFL 474

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-----TKGIQGDLLELYCGNGN 222
            ERL       I++    +F Q N      + + V+              LL++ CG G 
Sbjct: 475 HERLGKC----IFQISPGAFFQVNTEGAEILYQLVVDQIREVSQNPKDTTLLDVCCGTGT 530

Query: 223 FSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
             L          V+ V+I++P++  AR N   N              F  A R E+   
Sbjct: 531 IGLTCVTEGVVAEVVGVDISEPAINDARKNAELNGCGQYDKDTGGLIHFV-AGRAEQIMT 589

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPD-SLCRDLSILS 336
            +      S +     VDP R GL    V  ++A      I+Y+SCNP  +L RD ++  
Sbjct: 590 SVISDAKQSGKKLVAVVDPARDGLHADVVRALRANERIKRIVYVSCNPTGTLVRDAALFC 649

Query: 337 TT---------HTIERLALFDQFPYTRHMECGVLLVR 364
                        +   +  D FP T H E  +   R
Sbjct: 650 APPTKRYNGSAFRVVAASPVDMFPGTAHTEVVMTFDR 686


>gi|313792112|gb|EFS40213.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL110PA1]
 gi|314976067|gb|EFT20162.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL045PA1]
 gi|315098565|gb|EFT70541.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL059PA2]
          Length = 393

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+ + +  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|314918299|gb|EFS82130.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL050PA1]
          Length = 393

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++ +   F Q + G    + + V+ + +  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTARVGQRRWKVVAGGFWQVHPGAAEALADAVIGSLEPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|313764426|gb|EFS35790.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL013PA1]
 gi|314915419|gb|EFS79250.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL005PA4]
 gi|314920111|gb|EFS83942.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL050PA3]
 gi|314931633|gb|EFS95464.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL067PA1]
 gi|314958086|gb|EFT02189.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL002PA1]
 gi|315101434|gb|EFT73410.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL046PA1]
 gi|327450754|gb|EGE97408.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL087PA3]
 gi|327453903|gb|EGF00558.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL083PA2]
 gi|328754172|gb|EGF67788.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL087PA1]
 gi|328754577|gb|EGF68193.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL025PA2]
          Length = 393

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+ + +  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|312372354|gb|EFR20335.1| hypothetical protein AND_20276 [Anopheles darlingi]
          Length = 735

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 126/362 (34%), Gaps = 68/362 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPI--H 42
            Y++Q+ +K   +  ++  F                            L+  R  P+   
Sbjct: 159 SYDEQIVQKQSEMENVLQKFGKELWTTVPTLRSFVEKQRELYAGLPCELEAIRRSPVQDG 218

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQT-----------KERMRIDYFMPGSLLI-----NAL 86
           YR + EF +  D      + F   +           ++   I   M  ++ I      A 
Sbjct: 219 YRNKCEFTVGKDAQGTKRVGFRVGSYSNGFLEVESVQKLKHIPECMKKTVTIFEEYVQAS 278

Query: 87  MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146
            +E+ +    +   R    ++ + T Q    IV +    L +   ++    + D L +  
Sbjct: 279 SLEVYSAETYQGYFRQLTVRMSHATGQVM-VIVGVHLQALSEAEQKDLKQSIVDCLSSEA 337

Query: 147 YQIQ-------LIGRANKT-------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
            +          + +  +        +      ++D+ +      L +R    +F Q N 
Sbjct: 338 GKAAGVCSIYFEVIQKRQQGQYTNPIEHLYGETHIDDEIL----GLKFRISPQAFFQINT 393

Query: 193 GINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                + +  +  A       +L++ CG G   L  ARH  +VL V+I   ++E A+YN 
Sbjct: 394 LAAGVLYQCAIDLAAPDNNTSVLDICCGTGTIGLCFARHCKQVLGVDIVPQAIEDAKYNA 453

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N + N K    ++ +F  ++ R        +I           VDPPR+GL   TV  
Sbjct: 454 ERNGIENCKFYSGNADDFIMSLIRN------ANIVQEQKESIIAIVDPPRAGLRSFTVRE 507

Query: 312 VQ 313
           ++
Sbjct: 508 LR 509


>gi|313801935|gb|EFS43169.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL110PA2]
          Length = 393

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+ + +  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|315077986|gb|EFT50037.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL053PA2]
          Length = 393

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+ + +  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|304389619|ref|ZP_07371581.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327172|gb|EFL94408.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 342

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 120/347 (34%), Gaps = 38/347 (10%)

Query: 49  FHIWHDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107
             +      +   +   +     + +      +  I+A    + A ++          + 
Sbjct: 1   MVVSGSKKSIVLGLAPNEKHPTGIDLQSCPLYAPAIHAAFTPIRAWLQRLGA------RP 54

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-------------LIGR 154
             + +   +    L+      D      +R + ALH  ++                +  +
Sbjct: 55  YNIPTAKGEVKYVLVSANPAGDLMVRLVLRSKAALHRVEHTWSELQAELPNLRVFSVNIQ 114

Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
              T +   R+ +    +  + + G          +F Q N   +  +        + +Q
Sbjct: 115 PEHTTVIEGREEIILSSERYIPMPGIGTDLWLAPGAFFQTNTAASQALYAQAATWARELQ 174

Query: 211 GD-LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +   +LYCG G F+  L+     +V  VE+  P+++ A++ +         +    S +
Sbjct: 175 PETAWDLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNK 234

Query: 269 FTQAMRREREFNRLKDIDIHSYR---------FKTIFVDPPRSGLDDATVGMVQ--AYPH 317
                       R   I   + +            + V+PPR GL       ++    PH
Sbjct: 235 NDGTPNTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPH 294

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++Y SC P +L  DL  + + + I    L D FP+T H+EC VL+ R
Sbjct: 295 LIYSSCFPGTLVEDLRRMRS-YQIRAAKLVDMFPHTSHVECVVLMSR 340


>gi|70954218|ref|XP_746166.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526695|emb|CAH88281.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 733

 Score =  153 bits (386), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 160/458 (34%), Gaps = 114/458 (24%)

Query: 3   GTLLIDQY-------EQQLAEKVDRLR-QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD 54
           GT   D+Y       +  L E+V++   Q+      P   I       YR + EF I +D
Sbjct: 292 GTQENDEYNDMQTFNDYSLEERVNKYNFQIDNPLYPPEKNIN-----GYRNKCEFTISYD 346

Query: 55  GDDLYHIMF-----------------------------------------DQQTKE---- 69
            ++   I F                                         +++ K+    
Sbjct: 347 ENNNVEIGFVVGKVKTNMNETNDENNCNFSENNISNNPSPVNESHQTKLRNKKQKQCYFL 406

Query: 70  ---RMRIDYFMPGSLLINALMIEMMATIRLEPL------LRAKLFQIDYLTSQSDQAIVT 120
                 ID  +     +  ++ EM + I+           +  ++++  +   S + ++ 
Sbjct: 407 NPIVKSIDDCIHIHSCMKEVVKEMKSIIKDSNYPVFDRVYKTGIWRLLVIRLNSKKELMI 466

Query: 121 LIYHRLLDDAWRECAIRL-------------RDALHARKYQIQLIGRAN--------KTK 159
            +    LD   +    RL              +    +   + L    N        + +
Sbjct: 467 TVQTYSLDQKKKRDIKRLLINRLTKKKDESFMEFSGFKVVSLYLQEHGNSNDSTDQSQNE 526

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA---TKGIQGDLLEL 216
                ++++E +        +    + F Q N      + + V+      K ++  + +L
Sbjct: 527 HLWGVEHLEETILGN----KFLITPSCFFQVNHTSCEILYKKVIDYVNINKNMKNYIFDL 582

Query: 217 YCGNGNFSLVLARHFDR----VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            CG G  S+ +A         ++ ++I + S+ +A  N   N + N K ++   +E    
Sbjct: 583 CCGTGTISICIANALKHEDTHIVGIDICEESIISANKNAQINKIKNYKFIKGRVEELFA- 641

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSL- 328
                    +K+I   +     + VDPPRSGL  + +  + +      I+Y+SCNP +L 
Sbjct: 642 -------GEIKNISQQNCNI-IVIVDPPRSGLAQSVLNTLSSIHPINQIIYVSCNPSTLI 693

Query: 329 --CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               +L  ++    I+ L   D FP+T H+EC   + R
Sbjct: 694 NNVTNLLFMNECFKIKNLVFVDMFPHTYHLECITNIER 731


>gi|314967862|gb|EFT11961.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL037PA1]
          Length = 393

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+ + +  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|50842542|ref|YP_055769.1| SAM-dependent methyltransferase related to tRNA [Propionibacterium
           acnes KPA171202]
 gi|289425337|ref|ZP_06427114.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes SK187]
 gi|289427054|ref|ZP_06428770.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes J165]
 gi|295130621|ref|YP_003581284.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes SK137]
 gi|50840144|gb|AAT82811.1| SAM-dependent methyltransferase related to tRNA [Propionibacterium
           acnes KPA171202]
 gi|289154315|gb|EFD03003.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes SK187]
 gi|289159523|gb|EFD07711.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes J165]
 gi|291375509|gb|ADD99363.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes SK137]
 gi|313772192|gb|EFS38158.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL074PA1]
 gi|313807548|gb|EFS46035.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL087PA2]
 gi|313810057|gb|EFS47778.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL083PA1]
 gi|313812914|gb|EFS50628.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL025PA1]
 gi|313815965|gb|EFS53679.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL059PA1]
 gi|313818589|gb|EFS56303.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL046PA2]
 gi|313820357|gb|EFS58071.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL036PA1]
 gi|313822838|gb|EFS60552.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL036PA2]
 gi|313825231|gb|EFS62945.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL063PA1]
 gi|313827519|gb|EFS65233.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL063PA2]
 gi|313833757|gb|EFS71471.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL056PA1]
 gi|313838762|gb|EFS76476.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL086PA1]
 gi|314925245|gb|EFS89076.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL036PA3]
 gi|314959972|gb|EFT04074.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL002PA2]
 gi|314962771|gb|EFT06871.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL082PA1]
 gi|314973388|gb|EFT17484.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL053PA1]
 gi|314978543|gb|EFT22637.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL072PA2]
 gi|314983912|gb|EFT28004.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL005PA1]
 gi|314988096|gb|EFT32187.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL005PA2]
 gi|314989902|gb|EFT33993.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL005PA3]
 gi|315080612|gb|EFT52588.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL078PA1]
 gi|315085626|gb|EFT57602.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL002PA3]
 gi|315088323|gb|EFT60299.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL072PA1]
 gi|315095934|gb|EFT67910.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL038PA1]
 gi|315105623|gb|EFT77599.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL030PA1]
 gi|315108650|gb|EFT80626.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL030PA2]
 gi|327326215|gb|EGE68005.1| putative RNA methyltransferase [Propionibacterium acnes HL096PA2]
 gi|327330284|gb|EGE72033.1| putative RNA methyltransferase [Propionibacterium acnes HL097PA1]
 gi|327331909|gb|EGE73646.1| putative RNA methyltransferase [Propionibacterium acnes HL096PA3]
 gi|327443112|gb|EGE89766.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL013PA2]
 gi|327445894|gb|EGE92548.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL043PA2]
 gi|327448125|gb|EGE94779.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL043PA1]
 gi|327453170|gb|EGE99824.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL092PA1]
 gi|328753441|gb|EGF67057.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL020PA1]
 gi|328760824|gb|EGF74390.1| putative RNA methyltransferase [Propionibacterium acnes HL099PA1]
 gi|332675461|gb|AEE72277.1| SAM-dependent methyltransferase [Propionibacterium acnes 266]
          Length = 393

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+ + +  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|300784521|ref|YP_003764812.1| 23S rRNA methyltransferase [Amycolatopsis mediterranei U32]
 gi|299794035|gb|ADJ44410.1| 23S rRNA methyltransferase [Amycolatopsis mediterranei U32]
          Length = 395

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 120/366 (32%), Gaps = 76/366 (20%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPN----LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           + Q A K   + + +           ++     P+ +R R      HDG      +    
Sbjct: 93  DHQRALKAAVVAEQLQRLAGIERDVVVEALDGGPLDWRSRVRLVAGHDG---RAGLRAHH 149

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           +   + +D           +  E+   +      R      +   +Q     V       
Sbjct: 150 SHRVVALDDCPIA------VPGELDDVLA-----RRWRPGSELEVTQDGDGGV------- 191

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERLTVAGRTLIYRQIE 184
                          L   + +++    A     +    RD+              R   
Sbjct: 192 -----------HVRELSTVRGKVRARQLAGGVAVQHAAGRDW--------------RLDA 226

Query: 185 NSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIA 240
           + F Q +      +   V    +  + G   +LY G G F+ VLA       RVLA+E  
Sbjct: 227 HGFWQVHPAAASTLAAVVAEWAEAPVGGSAWDLYAGVGLFASVLATQVGTSGRVLAIESG 286

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + +V     N+A   +  V       +   ++  +                   + +DPP
Sbjct: 287 RRAVADGERNLA--DLPQVSWHAGRVEHVLESAAKPV---------------DVVVLDPP 329

Query: 301 RSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           R G   A V  +   A   I+Y++C+P +L RD++  +   +++  L  FD FP T H+E
Sbjct: 330 RKGAGKAVVESIVAGAPDRIVYVACDPAALARDVATFAAHGYSLTDLRAFDAFPMTHHVE 389

Query: 358 CGVLLV 363
           C  LL 
Sbjct: 390 CVALLS 395


>gi|260906561|ref|ZP_05914883.1| putative tRNA (Uracil-5-)-methyltransferase [Brevibacterium linens
           BL2]
          Length = 426

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 125/365 (34%), Gaps = 50/365 (13%)

Query: 15  AEKVDRLRQMMLAFQVPN--LQIFRSEP----IHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
             K + LR  +      +  +++  +      +++R R +  +     +    M   ++ 
Sbjct: 97  ELKAEVLRDQLSRIGHIDRSVEVAAAPGETTGLNWRTRVQLAV---DGNGRLGMLAPRSH 153

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH---- 124
           + + +      +  I  + +  +     + L  A              AIV         
Sbjct: 154 DIVPLTAAPLATSAIAEVALSSLRLPGADRLEFAW-------AGDRGAAIVRGDCDPSGL 206

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRAN-KTKICLDRDYVDERLTVAGRTLIYRQI 183
             L          L DA +    +       + K  +    D + E ++       YR  
Sbjct: 207 SELAQILPSQWSVLADARNGTGRKGAGTKGGHSKLAVVRGEDQLIETVSGRD----YRVA 262

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKP 242
            + F Q +      + + V +A       + +LYCG G   +  A     R+  VE AK 
Sbjct: 263 ADGFWQVHEQAPGLLSKKVNSALSDQTQMITDLYCGVGLLGISAATATGARLYGVEGAKS 322

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++E A+ N       N    R    +                          I +DPPR+
Sbjct: 323 AIENAKVNAKGL-TANFDASRADRAKI--------------------PNSDVIILDPPRA 361

Query: 303 GLDDATVGMVQAYPH--ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           G   A    +       I+Y+SC+  +L RDL++L +    I+ L+ FD FP T H+E  
Sbjct: 362 GAGKAVTRALIESSATTIVYVSCDAATLARDLAVLVNGGFAIDSLSGFDLFPLTSHVETV 421

Query: 360 VLLVR 364
            +L R
Sbjct: 422 TVLRR 426


>gi|313830386|gb|EFS68100.1| conserved domain protein [Propionibacterium acnes HL007PA1]
 gi|314955688|gb|EFT00090.1| conserved domain protein [Propionibacterium acnes HL027PA1]
          Length = 206

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+ + +  QGD  L+LYCG G F+ +L
Sbjct: 25  ETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEPQQGDEALDLYCGVGLFAGLL 84

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 85  ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 125

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 126 -APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 184

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 185 RAFDVFPMTHHVEAVAILEPK 205


>gi|145634134|ref|ZP_01789845.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittAA]
 gi|145268578|gb|EDK08571.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittAA]
          Length = 193

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 25/206 (12%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLAR 229
           +      +        F Q N  +   +              +L +L+CG G F L  A+
Sbjct: 1   MPENFNGIPLFIRPQGFFQTNPKVAAGLYATAQQWVAEFPIYNLWDLFCGVGGFGLHCAK 60

Query: 230 HFDRVLA-------VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
                         +EI+  ++ AA  +     + +V    + +    +           
Sbjct: 61  ALQEKWGKPIKLTGIEISSSAILAASNSAKILDLEHVNFQSLDAASVIE----------- 109

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH-ILYISCNPDSLCRDLSILSTTHT 340
              + +  +   + V+PPR G+       + Q  PH ILY SCN  ++ +DL  L+  + 
Sbjct: 110 ---NKNENKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLTC-YK 165

Query: 341 IERLALFDQFPYTRHMECGVLLVRKP 366
             ++ LFD FP T H E  VLL RK 
Sbjct: 166 PLKIQLFDMFPQTSHYEVLVLLERKK 191


>gi|220912404|ref|YP_002487713.1| deoxyribonuclease/rho motif-related TRAM [Arthrobacter
           chlorophenolicus A6]
 gi|219859282|gb|ACL39624.1| deoxyribonuclease/rho motif-related TRAM [Arthrobacter
           chlorophenolicus A6]
          Length = 465

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 78/337 (23%), Positives = 124/337 (36%), Gaps = 51/337 (15%)

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           + +R RA F +   G      M   ++ + + +      +  INAL    +  I L+ + 
Sbjct: 163 LGWRTRASFSVAPSGKL---GMHAHRSTQVLPVREMPLATDAINALQ---LWDIDLQGIE 216

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR---ANK 157
           R     ++     +    + L     L  A      RL     A    +   G    + +
Sbjct: 217 R-----VEVAAPANGSRPLVL-----LAPAEGTKPKRLAAVAAALPDDVSAAGFDPISGE 266

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-----IQGD 212
                 R +V E    +     YR     F Q +      ++  V     G         
Sbjct: 267 VTRLRGRSWVQE----SAAGHDYRVTGAGFWQIHRDAPGTLVGAVTDFLHGGGFLHPGAV 322

Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + +LY G G F+ VLA        VL+VE A  +   AR N+ A     V+IV+   +  
Sbjct: 323 VADLYAGAGLFTAVLADAVGETGAVLSVEGAPGTSRDARKNLHA--APQVEIVQGRVERV 380

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327
            +   R                F  + +DPPR+G   A V  +  A+P  I Y+SC+P S
Sbjct: 381 LRQKPR---------------NFDALVLDPPRAGAGKAVVRQLADAHPRAIAYVSCDPAS 425

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             RD+S        +  L  FD +P+T H+E   LL 
Sbjct: 426 FARDVSYFRDAGWELAGLRAFDIYPHTHHLETVALLT 462


>gi|291483116|dbj|BAI84191.1| hypothetical protein BSNT_01153 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 123

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 15/134 (11%)

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             VEI   ++E A+ N   N + N +     ++        E                 T
Sbjct: 2   YGVEIVPEAIEDAKRNAELNGITNAEFAVGEAETVIPKWYEE------------GITADT 49

Query: 295 IFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351
           + VDPPR G D+A +  +       ++Y+SCNP +L RDL +L    +    +   D FP
Sbjct: 50  LVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLEDGGYATREVQPVDMFP 109

Query: 352 YTRHMECGVLLVRK 365
           +T H+EC VL+V+K
Sbjct: 110 HTNHVECCVLIVKK 123


>gi|307701067|ref|ZP_07638092.1| TRAM domain protein [Mobiluncus mulieris FB024-16]
 gi|307614062|gb|EFN93306.1| TRAM domain protein [Mobiluncus mulieris FB024-16]
          Length = 416

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 138/379 (36%), Gaps = 76/379 (20%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEP-IHY--------RMRAEFHIWHDGDDL 58
           Y  QL  K + L + +       L  ++ R  P            R R  F +       
Sbjct: 90  YPAQLRWKREVLAEALRRNGSEALVAEVSRVAPDWSVASLGASPGRSRVSFAL---DSAG 146

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           + +M +  T  + RI  F             ++A +    L   KL              
Sbjct: 147 FPVMSEAGTHRQHRISSFP-----------LLVANLEGLRLFDRKLAF------------ 183

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD------ERLT 172
                             R++    +    +  +G         D D+V       E + 
Sbjct: 184 --------------APGSRVKAVAPSASAPVFAVGSE-----VFDADFVPTTPRVREVVR 224

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
           V  R   YR   +SF Q +      ++E +LA    I G ++LELY G+G FS+ LA   
Sbjct: 225 VGAREHTYRIFASSFWQTDYRAPAVLVEALLAGVGDISGFEVLELYAGSGLFSVFLAEAI 284

Query: 232 D---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               R+  VE  + +V++A YN+      + +  R+     +    R  +F +       
Sbjct: 285 GDSGRLTTVEGDRVAVKSAGYNLQHAGFEDTR-SRVERAAVSARFLRGLDFGQ------R 337

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLA 345
             R   +  DPPRSGL     G +       +  ISC+P S  RDL  L    + ++   
Sbjct: 338 FMRGTLVVADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGYRLQSFR 397

Query: 346 LFDQFPYTRHMECGVLLVR 364
           +FD FPYT+H+E   +L R
Sbjct: 398 VFDLFPYTQHVEVLSVLGR 416


>gi|298346672|ref|YP_003719359.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236733|gb|ADI67865.1| 23S rRNA methyluridine methyltransferase [Mobiluncus curtisii ATCC
           43063]
          Length = 342

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 120/347 (34%), Gaps = 38/347 (10%)

Query: 49  FHIWHDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107
             +      +   +   +     + +      +  I+A    + A ++          + 
Sbjct: 1   MVVSGSKKSIVLGLAPNEKHPTGIDLQSCPLYAPAIHAAFTPIRAWLQRLGA------RP 54

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-------------LIGR 154
             + +   +    L+      D      +R + ALH  ++                +  +
Sbjct: 55  YNIPTAKGEVKYVLVSANPAGDLMVRLVLRSKAALHRVEHTWSELQAELPNLRVFSVNIQ 114

Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
              T +   R+ +    +  + + G          +F Q N   +  +        + +Q
Sbjct: 115 PEHTTVIEGREEIILSSERYIPMPGIGTDLWLAPGAFFQTNTAASQALYAQAATWARKLQ 174

Query: 211 GD-LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +   +LYCG G F+  L+     +V  VE+  P+++ A++ +         +    S +
Sbjct: 175 PETAWDLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNK 234

Query: 269 FTQAMRREREFNRLKDIDIHSYR---------FKTIFVDPPRSGLDDATVGMVQ--AYPH 317
                       R   I   + +            + V+PPR GL       ++    PH
Sbjct: 235 NDGTPNTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPH 294

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++Y SC P +L  DL  + + + I    L D FP+T H+EC VL+ R
Sbjct: 295 LIYSSCFPGTLVEDLRRMRS-YQIRAAKLVDMFPHTSHVECVVLMSR 340


>gi|197104814|ref|YP_002130191.1| RNA methyltransferase, TrmA family [Phenylobacterium zucineum HLK1]
 gi|196478234|gb|ACG77762.1| RNA methyltransferase, TrmA family [Phenylobacterium zucineum HLK1]
          Length = 409

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 126/356 (35%), Gaps = 28/356 (7%)

Query: 14  LAEKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKER 70
           LA K DRLR  +     +   L  + + P   R R   H      D        +++ + 
Sbjct: 77  LAWKADRLRTTLARQHIETQILTPYATGP-GTRRRVTLHARRGSRDAARLGYKARKSWDL 135

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + I         I A +  +       PL            + SD  +   I        
Sbjct: 136 VDIAVCPISEPAIQAAIPALKR--LAAPLFEHPKSAPSLHVTLSDTGLDIDITGVEAKSG 193

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                 R++ A  A +     +  A +         V  RL  A  +L       +F Q 
Sbjct: 194 GLSGDARMQLAERAAEADFARVTLAGEVAYMARSPQV--RLGPAVVSL----PPGAFLQA 247

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                  M E+V  A  G    + +LYCG G F+  LA     V A + A  +V+A    
Sbjct: 248 TRDAEAAMAEFVAGAAAGAS-RIADLYCGVGTFTFRLAE-VAPVHAADFAAEAVQA--LT 303

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            A      +K V   +++     RR      LK  D+          DPPR+G  + T  
Sbjct: 304 AALAGAPGLKGVTAEARDLV---RRPVLAEELKKTDVA-------VFDPPRAGAAEQTAE 353

Query: 311 MVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           + ++    ++ +SCNP +  RD   L      +ER+   DQF ++ H+E   +  R
Sbjct: 354 LARSQVARVIGVSCNPATFARDARTLIDAGFRLERVLPVDQFLWSPHIELVGVFQR 409


>gi|167646120|ref|YP_001683783.1| (Uracil-5)-methyltransferase [Caulobacter sp. K31]
 gi|167348550|gb|ABZ71285.1| (Uracil-5)-methyltransferase [Caulobacter sp. K31]
          Length = 408

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 123/355 (34%), Gaps = 27/355 (7%)

Query: 14  LAEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           L  K +++   +     +   L  F + P   R R   H             ++++   +
Sbjct: 77  LEWKREQVVYQLAREGLETEVLPTFAAPPAS-RRRVALHARGGKGGARLGFKERRSWNLV 135

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
           RI+        + A    +       P L           + +   +   I         
Sbjct: 136 RIEQCPVTHPKLVAAFPALTRLAG--PFLEHPKSAPTLHVTLTATGLDIDITGVEAKSGG 193

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
                R+R A  A +     +  A +      +  V  +L  A  +L       SF Q  
Sbjct: 194 LSADARVRAARIAGEADFARVTMAGEMIYMARQPMV--KLGPAIVSL----PAGSFLQAV 247

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 M+++ + A +G    +++LY G G F+  LA     V A + + P++ A     
Sbjct: 248 PQAEKAMVDFAVEAAQGAS-RIVDLYSGVGTFTFRLAEIGG-VHAADSSAPAIAA----- 300

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                  +K    ++      +   R+  R   +     +     +DPPR+G  +  V +
Sbjct: 301 -------LKGAVGTATGLKAIIAEARDLVRRPVLSSELKKVDVAVLDPPRAGAYEQHVEI 353

Query: 312 V-QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                  ++ +SCNP +  RD  +L      +ER+   DQF ++ H+E   +  R
Sbjct: 354 ANSKVARVVGVSCNPATFARDAKVLIEAGFRLERVLPVDQFLWSPHIELVGVFSR 408


>gi|328948092|ref|YP_004365429.1| (Uracil-5)-methyltransferase [Treponema succinifaciens DSM 2489]
 gi|328448416|gb|AEB14132.1| (Uracil-5)-methyltransferase [Treponema succinifaciens DSM 2489]
          Length = 405

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 139/368 (37%), Gaps = 40/368 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
              L   + E Q   +V  L+        ++P +QI       YR  A F + HDG    
Sbjct: 73  GCNLQHIEPEFQRQLRVQTLKDAFFREGIEIPQIQIVSGADKGYR--ARFQL-HDG---- 125

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
             +  ++T E ++ID     +  +N  + E+    +  P  R  +F    + S  D    
Sbjct: 126 -GLMGKKTNEIIQIDQCPCATEEVNKYLKEI--PFKDRPKGRIHIFGSKNIASIPD---- 178

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
                  +  A +    ++ +     K Q +   R   T            + +  +++ 
Sbjct: 179 ---GFDKIVVAEQSEKKQISEKGKNGKKQKKSKSRYEGT---FSESKSTCAVKILDKSIT 232

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           +      F Q N  +    +  +     G   ++L++Y G G FS+ L   F+ V+ VE 
Sbjct: 233 FD--ALGFFQSNLEVLEKSIPLITGGISG--KNVLDMYSGAGTFSVFLTDSFENVILVEH 288

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K +V  A  N+A     +       S +       E               F  + +DP
Sbjct: 289 NKSAVVYAEQNLA--GKKHESF--GVSGDVWVKYHAET-------CIKECGNFDAVVIDP 337

Query: 300 PRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           PRSG++ +    +Q    P I  +SC+P +  RD   L ++ + +E+L L D +P T H+
Sbjct: 338 PRSGMEKSVQKWLQNSKIPQIRSLSCDPSTHARDAKALINSGYRLEKLFLLDFYPQTGHI 397

Query: 357 ECGVLLVR 364
           E      +
Sbjct: 398 ESLGYFEK 405


>gi|315084283|gb|EFT56259.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL027PA2]
          Length = 393

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+ + +  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTARVGQRRWKVGAGGFWQVHPGAAEALADAVIGSLEPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRKGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|170750219|ref|YP_001756479.1| (uracil-5)-methyltransferase [Methylobacterium radiotolerans JCM
           2831]
 gi|170656741|gb|ACB25796.1| (uracil-5)-methyltransferase [Methylobacterium radiotolerans JCM
           2831]
          Length = 425

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 122/366 (33%), Gaps = 33/366 (9%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHY----RMRAEFHIWHDGDDLYHIMFDQQ 66
             +LA K D + Q +       L +     +      R R   H+   G      +   +
Sbjct: 81  PAELAWKRDLVAQALS---QARLDVTPGPTLDAHGAGRRRLTLHVREIGGRAEAGLMAAR 137

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI-VTLIYHR 125
           +   + ID+       + AL        RL   L      +D   + +DQ + V L  H 
Sbjct: 138 SHALVPIDHCPIT---VPALHPAPEVARRLAAPLGHGRKPLDVAVTATDQGLDVDLRGHG 194

Query: 126 LLDDAWRECAIRLRDALHARKYQIQ--LIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
            +        +R+   L   +  +    +  A    +                       
Sbjct: 195 PVSAGVGAALVRIAGELGLARLSLHGERLMEAEPVSVTAGDPAG-----GTSGAARLYPA 249

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
              F Q  A     + +  LAA       + +L+ G G  +L +AR    V AVE     
Sbjct: 250 PGGFLQATAAGQATLCDLTLAALGPRVRRVADLFAGCGPLTLAIARTAA-VHAVESDA-- 306

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                   A   ++         +  T      R+  R   +      F  +  DPPR+G
Sbjct: 307 -------AALAGLDRAARAASGLRRIT---SERRDLFRRPLLPTELDPFDAVVFDPPRAG 356

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
            +     +  A  P ++ ++C+  +  RD + L +  + +E +   DQF ++ H+E   +
Sbjct: 357 AEAQARQIAAARVPLVIGVACDAGTFARDAATLVAGGYRLETVTPVDQFRHSGHVEMVGV 416

Query: 362 LVRKPS 367
             R+P+
Sbjct: 417 FRREPA 422


>gi|257456213|ref|ZP_05621410.1| tRNA (Uracil-5-)-methyltransferase family protein [Treponema
           vincentii ATCC 35580]
 gi|257446299|gb|EEV21345.1| tRNA (Uracil-5-)-methyltransferase family protein [Treponema
           vincentii ATCC 35580]
          Length = 380

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/374 (18%), Positives = 108/374 (28%), Gaps = 81/374 (21%)

Query: 2   SGTLLI--DQYEQQLAEKVDRLRQMMLA--FQVPNLQIF-RSEPIHYRMRAEFHIWHDGD 56
              L +  D Y+Q L      + ++            +F       YR R +FH+     
Sbjct: 73  GCNLQMADDAYQQSLR--QAMVAELFTRAHVTPERSPVFTAGPSWEYRNRFQFHV---DK 127

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
           +    M    +   + +                        P LR+ L Q          
Sbjct: 128 NGTIGMHGFASNTVVPVRDCPIAV-----------------PALRSVLQQ---------G 161

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
            +  L  H    D           A  A    I     A      L+             
Sbjct: 162 GLQKLFPHSKKID----KDRYHVFAQDAVYSPILPGASARVKDTVLN------------- 204

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
                     F Q N  +   ++E V          +L+ Y G G FS  L      +  
Sbjct: 205 -----FSVFGFFQSNIAVLEKLIEPVADL--PSCTRILDFYAGVGTFSAFLTEKAAELHL 257

Query: 237 VEIAKPSVEAARYN-----IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
           VE  + ++ AA+ N        N         +S                  DI     +
Sbjct: 258 VEHNERALLAAQQNLDRIIAEKNSSCRCFFHTVSDA-------------GWPDIPAAKLK 304

Query: 292 FKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFD 348
           +  + +DPPR G+    +  +     P I Y+SCNP +  RD   L++  +      LFD
Sbjct: 305 YDAVIIDPPRQGVHSRVLTYLGQAKIPRIHYVSCNPATFVRDAKKLTSLGYRFTEYRLFD 364

Query: 349 QFPYTRHMECGVLL 362
            +P T H E   + 
Sbjct: 365 FYPQTHHCELLGIF 378


>gi|259417594|ref|ZP_05741513.1| tRNA (Uracil-5-)-methyltransferase superfamily [Silicibacter sp.
           TrichCH4B]
 gi|259346500|gb|EEW58314.1| tRNA (Uracil-5-)-methyltransferase superfamily [Silicibacter sp.
           TrichCH4B]
          Length = 414

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 129/355 (36%), Gaps = 32/355 (9%)

Query: 15  AEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             K D +R  +L+  +    +   + P H R RA   +             + +     I
Sbjct: 84  QWKTDIVRNALLSRGLETEFRPILTSPAHSRRRATIAVKRTKKGAMAGFHGRASD---VI 140

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI-VTLIYHRLLDDAWR 132
                  LL   LM  +     L  +  ++   +    + S+  + V +   + LD   R
Sbjct: 141 TEIPDCHLLAPDLMAALPMAEDLAIIGASRKAPLSVTITTSEVGLDVLVRNGKPLDGPLR 200

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ--IENSFTQP 190
              I+L  A+   K            ++  D + +        R  + R      +F Q 
Sbjct: 201 ---IQLAQAVERHKLA----------RLTWDDEPLGMEQPPTQRFGVARVCPPPGAFLQA 247

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                  ++  V  A  G +  +++L+ G G FSL LA     V AVE  +  ++A    
Sbjct: 248 TPEGEAALVSAVRDAVGGAR-RIVDLFAGAGTFSLPLATGA-EVHAVEGEREMMQALEQ- 304

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    + ++  + E     R       L+        +  + +DPPR+G +     
Sbjct: 305 ----GWRKAQGLKKVTTETRDLFRNPLLVEDLRKF---GQVYDAVVIDPPRAGAEAQVQE 357

Query: 311 MVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           + +A  P I Y+SCNP +  RD  +L S  + +  + + DQF ++ H E    L 
Sbjct: 358 LAKAKLPTISYVSCNPITFARDAEVLVSAGYRLNWVQVVDQFRWSSHTELAASLS 412


>gi|325963014|ref|YP_004240920.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469101|gb|ADX72786.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 458

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 122/340 (35%), Gaps = 51/340 (15%)

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           + +R RA F +   G      M   ++   + +         IN L    +  I L+ + 
Sbjct: 156 LGWRTRASFSVTPGGKL---GMHAHRSGHIVPVREMPLAVDAINELR---LWDIDLQGVE 209

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANK 157
           R     ++     +    + L     L  A      RL      L A      L   +  
Sbjct: 210 R-----VEVAAPANGSRPLVL-----LAPAAGTRPKRLAAIAAQLPADVSVASLDPESAA 259

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-----IQGD 212
            +    R +V E          YR     F Q +      ++  V    +G         
Sbjct: 260 VEQLRGRTWVQET----AAGHDYRVTGAGFWQIHRDAPEALVGAVTQFLQGGGYLHPGAV 315

Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + +LY G G F+ VLA        VL+VE A  +   AR N+ A     V+IV+   +  
Sbjct: 316 VADLYAGAGLFTAVLADAVGETGSVLSVEGAAGTSRDARKNLHA--APQVEIVQGRVERV 373

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDS 327
            +   R                F  + +DPPR+G   A V  ++ A+P  I Y+SC+P S
Sbjct: 374 LRQKPR---------------NFDALILDPPRAGAGKAVVNQLLAAHPRAIAYVSCDPAS 418

Query: 328 LCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
             RD+         +  L   D +P+T H+E   LL  +P
Sbjct: 419 FARDVGYFRQAGWELSGLRALDLYPHTHHLETVALLAPRP 458


>gi|332298136|ref|YP_004440058.1| deoxyribonuclease/rho motif-related TRAM [Treponema brennaborense
           DSM 12168]
 gi|332181239|gb|AEE16927.1| deoxyribonuclease/rho motif-related TRAM [Treponema brennaborense
           DSM 12168]
          Length = 430

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 131/373 (35%), Gaps = 47/373 (12%)

Query: 10  YEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           Y+Q+L      L  +      ++P+L+I       YR R +    HDG         +  
Sbjct: 85  YQQELR--TRILGDLFKRENIEIPSLEIISGSTDSYRCRFQL---HDGGLK-----SRSG 134

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI----VTLIY 123
            E + I      +  I + M +        P  R  LF    + +++        V L  
Sbjct: 135 SEIVPIADCPVATEEIRSWMRQ--TPCEHRPRGRVHLFGDRRVETEAGVQQRFPNVLLAR 192

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--------DRDYVDERLTVAG 175
                +  R      R      K +      A +    +        DR    E+ T   
Sbjct: 193 ETAQPETKRIIGKTGRPVKDTVKKRFSGTVYAPENVCTVALQPHETADRSENQEK-TREA 251

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           + + +      F Q N  +    +  +        G +L+LY G G FS+ LA     V 
Sbjct: 252 KRISFDV--RGFFQSNLEVLEKTVFEICR--FAGTGRMLDLYSGAGTFSVFLAETASAVT 307

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF-KT 294
            VE  + ++  A  N+    V +              +   +      + DI +      
Sbjct: 308 LVEHNRDALAFAERNLT--GVPHTSY----------GISGSKWITAYAEPDIRANGPYDC 355

Query: 295 IFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
             VDPPRSG++      +   A P +  +SC+P +  RD S L    + +++L L D +P
Sbjct: 356 AVVDPPRSGMEKDVRNFLGRSAVPRVCSVSCDPATQARDCSALIRAGYELKKLYLLDFYP 415

Query: 352 YTRHMECGVLLVR 364
            T H+E   LL +
Sbjct: 416 QTSHIESLALLEK 428


>gi|68069515|ref|XP_676669.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56496471|emb|CAH94117.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 744

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 154/438 (35%), Gaps = 106/438 (24%)

Query: 11  EQQLAEKVDRLR-QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF------ 63
           E  L EK+++   Q+       +  I       YR + EF I +D ++   I F      
Sbjct: 319 ESSLEEKLNKYNFQIDNPLYPSDKNIN-----GYRNKCEFTISYDENNNVEIGFVVGKVK 373

Query: 64  -----------------------------------DQQTKE-------RMRIDYFMPGSL 81
                                              +++ K+          ID  +    
Sbjct: 374 TNMNETNDENNCNFSENNISNNPSPVNESHQAKLRNKKQKQCYFLNPIVKNIDDCIHIHS 433

Query: 82  LINALMIEMMATIRLEPL------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  ++ EM + I+           +  ++++  +   S + ++  +    LD   +   
Sbjct: 434 CMKEVVKEMKSIIKDSNYPVFDRVYKTGIWRLLVIRLNSKKELMITVQTYSLDQKKKRDI 493

Query: 136 IRL-------------RDALHARKYQIQLIGRAN--------KTKICLDRDYVDERLTVA 174
            RL              +  + R   + L    N        + +     ++++E +   
Sbjct: 494 KRLLINRLTKKKDESFMEFSNFRVVSLYLQEHGNSNDSTNQSQNEHLWGVEHLEEIILGN 553

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAA---TKGIQGDLLELYCGNGNFSLVLARHF 231
                +    + F Q N      + + V+      K ++  + +L CG G  S+ +A   
Sbjct: 554 ----KFLITPSCFFQVNHTSCEILYKKVIDYVNINKNMKNYIFDLCCGTGTISICIANAM 609

Query: 232 DR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
                ++ ++I + S+ +A  N   N + N K ++   +E             +K+I   
Sbjct: 610 KHEDIIVGIDICEESIISANKNAQINKIKNYKFIKGRVEELFS--------GEIKNISQQ 661

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSL---CRDLSILSTTHTIE 342
           +     + VDPPRSGL  + +  + +      I+Y+SCNP +L     +L  ++    I+
Sbjct: 662 NCNI-IVIVDPPRSGLAQSVINTLSSTHPINQIIYVSCNPSTLINNVTNLLFMNEYFKIK 720

Query: 343 RLALFDQFPYTRHMECGV 360
            L   D FP+T H+EC  
Sbjct: 721 NLVFVDMFPHTYHLECIT 738


>gi|315656863|ref|ZP_07909750.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492818|gb|EFU82422.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 347

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 121/347 (34%), Gaps = 38/347 (10%)

Query: 49  FHIWHDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI 107
             +      +   +   +     + +      +  I+A    + A ++          + 
Sbjct: 1   MVVSGSKKSIVLGLAPNEKHPTGIDLQSCPLYAPAIHAAFTPIRAWLQRLGA------RP 54

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-------------LIGR 154
             + +   +    L+      D      +R + ALH  ++                +  +
Sbjct: 55  YNIPTAKGEVKYVLVSANPAGDLMVRLVLRSKAALHRVEHTWSELQAELPNLRVFSVNIQ 114

Query: 155 ANKTKICLDRDYV----DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
              T +   R+ +    +  + + G          +F Q N   +  +        + +Q
Sbjct: 115 PEHTTVIEGREEIILSSERYIPMPGIGTDLWLAPGAFFQTNTAASQALYAQAATWARELQ 174

Query: 211 GD-LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +   +LYCG G F+  L+     +V  VE+  P+++ A++ +         +    S +
Sbjct: 175 PETAWDLYCGVGGFAFALSSAGVAQVTGVEVVGPAIDGAKHAVTELASATATVPVEPSNK 234

Query: 269 FTQAMRREREFNRLKDIDIHSYR---------FKTIFVDPPRSGLDDATVGMVQ--AYPH 317
                       R   I   + +            + V+PPR GL       ++    PH
Sbjct: 235 NDGTPNTPSAAPRPHFITADATKWAVNQTLMPPDLVVVNPPRRGLGPDLSSWLERSGIPH 294

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++Y SC P++L  DL  + + + I    L D FP+T H+EC VL+ +
Sbjct: 295 LIYSSCFPETLVEDLRRMRS-YQIRAAKLVDMFPHTSHVECVVLMSK 340


>gi|49475234|ref|YP_033275.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
 gi|49238039|emb|CAF27246.1| RNA methyltransferase [Bartonella henselae str. Houston-1]
          Length = 417

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 135/359 (37%), Gaps = 40/359 (11%)

Query: 16  EKVDRLRQMMLAFQVPNLQIFRSE--PIHY--RMRAEFHIWHDGDDLYHIMFDQQTKERM 71
            K   +   +  +    + +F S      Y  R R                    + + +
Sbjct: 84  WKRQLVIDALKRYG---IDVFVSPLIEGGYQNRRRITLTALATQKGHIVGFNRYLSHDVI 140

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++      L I + +  +     L      K FQ+   + ++            LD A+
Sbjct: 141 ALEECPVTRLEIMSKLNSIKLLCALVG-NHTKRFQVTVTSVENG-----------LDVAF 188

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--VAGRTLIYRQIENSFTQ 189
             C +R     H R+  I        T++ ++ + + ER    V    +        F Q
Sbjct: 189 NGCVVR---DEHIRQQMIHTALAYGMTRLSVEGEILVEREKPLVYFGDVCVEFPAGGFLQ 245

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
                  +++  ++ A      + ++L+ G G F+L +A+  + V AVE  + ++     
Sbjct: 246 A-TFEAENIMGNIILAYLEKAKNAVDLFSGLGTFTLRMAKKMN-VHAVENNETALANLDR 303

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
                    +K +    ++  +     +E +           F+ +  DPPR+G  +   
Sbjct: 304 AARF--ATGLKTITCERRDLFRRPLSAKELS----------CFECVVFDPPRAGAQEQVR 351

Query: 310 GMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
            + +   P ++ ISCNP +  RDLS+L +  +TIE++   DQF ++ H+E   LL ++ 
Sbjct: 352 ELAKTTIPRVVTISCNPVTFARDLSLLVAGGYTIEKIIPIDQFLWSPHVEIVALLSKRK 410


>gi|226306318|ref|YP_002766278.1| RNA methyltransferase [Rhodococcus erythropolis PR4]
 gi|226185435|dbj|BAH33539.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
          Length = 422

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 119/365 (32%), Gaps = 51/365 (13%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSE-P-----IHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Q   K   +R+ +L        +   E P       +R R    +   G   YH     +
Sbjct: 96  QREMKTSVVREQLLRLARVESDVAVEELPGTGDGTGWRTRVRLAVDGHGVAGYHAYRSNR 155

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
               +R          I+    + +   +  P       ++  +   + Q  V  I    
Sbjct: 156 IVTDLRCTQ-------IDQSAYDGLGGAQWAPG-----SELQVVLDAAGQRHVVEIAAPA 203

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +         R          +    G   KT++ +  D V ER+      L        
Sbjct: 204 VS-----KTGRRTPGRRGAMARRAASGGPRKTRVAIGSDTVIERVGNREWAL----AATG 254

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKP 242
           F Q + G      + V         D   +LY G G F+ VLA        V +VE +  
Sbjct: 255 FWQAHRGAANAYSQVVGEWAGAATADTAWDLYGGVGVFASVLADLVGPSGVVESVESSAR 314

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V   R   A + +  V+      +     + R                   + +DPPR+
Sbjct: 315 AVADGR--AALSDLGQVRFHSARVENVIADLER---------------SPAVVVLDPPRA 357

Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECG 359
           G     V  + A     I++I C+P S  RD+ + L     I  L  FD FP T HMEC 
Sbjct: 358 GAGRPVVEALAATGAERIVHIGCDPASFGRDIGLYLEQGFRIGGLRAFDAFPQTHHMECI 417

Query: 360 VLLVR 364
            LL R
Sbjct: 418 ALLER 422


>gi|229491254|ref|ZP_04385080.1| tram domain protein [Rhodococcus erythropolis SK121]
 gi|229321793|gb|EEN87588.1| tram domain protein [Rhodococcus erythropolis SK121]
          Length = 422

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 117/365 (32%), Gaps = 51/365 (13%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQI------FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Q   K   +R+ +L        +         +   +R R    +   G   YH     +
Sbjct: 96  QREMKTSVVREQLLRLARVESDVEVEELPGTGDGTGWRTRVRLAVDGHGVAGYHAYRSNR 155

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
               +R          I+    + +   +  P       ++  +   + +  V  I    
Sbjct: 156 IVTDLRCTQ-------IDQSAYDGLGGAQWAPG-----SELQVVLDAAGERHVVEIAAPA 203

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +         R          +    G   KT++ +  D V ER+      L        
Sbjct: 204 VS-----KTGRRTPGRRGAMARRAASGGPRKTRVAIGSDTVIERVGSREWAL----AATG 254

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKP 242
           F Q + G      + V         D   +LY G G F+ VLA        V +VE +  
Sbjct: 255 FWQAHRGAAAAYSQVVGEWAGAATADTAWDLYGGVGVFAAVLAELVGPSGVVESVESSAR 314

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V   +   A + +  V+      +     + R                   + +DPPR+
Sbjct: 315 AVADGQ--AALSDLGQVRFHSARVENIIADLER---------------SPAVVVLDPPRA 357

Query: 303 GLDDATVGMVQAY--PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECG 359
           G     V  + A     I++I C+P S  RD+ + L     I  L  FD FP T HMEC 
Sbjct: 358 GAGRPVVEALAATGAERIVHIGCDPASFGRDIGLYLEQGFRIGGLRAFDAFPQTHHMECI 417

Query: 360 VLLVR 364
             L R
Sbjct: 418 AFLER 422


>gi|331696878|ref|YP_004333117.1| deoxyribonuclease/rho motif-related TRAM [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951567|gb|AEA25264.1| deoxyribonuclease/rho motif-related TRAM [Pseudonocardia
           dioxanivorans CB1190]
          Length = 398

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 114/364 (31%), Gaps = 86/364 (23%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   +R+ +      +  +   E    P+ +R R    +  +G      +   +
Sbjct: 109 ELQRELKTVVVREQLARLAGIDSDVTVEELPGGPLGWRTRVRLAVDGEG---RAGLRAHR 165

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           + E + +         +                                   V    HR 
Sbjct: 166 SHEVLPVADCPIAPEGVLPP--------------------------------VLARRHRP 193

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
            ++   E  +     +H  +    ++      +    R++              R    +
Sbjct: 194 GEEF--EITVDADGTVHDERDGAPVV------QRVAGREW--------------RLRPGA 231

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDR---VLAVEIAKP 242
           F Q +  +   +   V        G    +LY G G F+ VLA    R   V  VE A  
Sbjct: 232 FWQVHPALAPTLAAVVGQWAAAPAGATAWDLYGGAGLFAAVLAEQVGRDGAVTVVESAAG 291

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V       A   +  V       +    A+                     +  DPPRS
Sbjct: 292 AVADGE--AALADLPQVAWEVGRVERVLPALA----------------DPDVVVADPPRS 333

Query: 303 GLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECG 359
           GL  A V  +  +    +++++C+P +L RD+ + +   + +  L  FD FP T HMEC 
Sbjct: 334 GLGRALVEAICARGPRRVVHVACDPAALGRDVGLFAALGYRLTALRAFDAFPMTHHMECV 393

Query: 360 VLLV 363
            LL 
Sbjct: 394 ALLE 397


>gi|258597349|ref|XP_001348019.2| RNA (Uracil-5-)methyltransferase, putative [Plasmodium falciparum
           3D7]
 gi|254832677|gb|AAN35932.2| RNA (Uracil-5-)methyltransferase, putative [Plasmodium falciparum
           3D7]
          Length = 857

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 26/220 (11%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK---GIQGDLLE 215
           +     +Y++E +        +    + F Q N      + + V+       GI+  + +
Sbjct: 650 EHLWGMEYLEETILDN----KFLLTPSCFFQVNRDSCQILYKRVIDYINIKEGIKNYIFD 705

Query: 216 LYCGNGNFSLVLARHFD----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           L CG G  S+  +         ++ ++I + S+ +A  N   N++NN K +    +EF Q
Sbjct: 706 LCCGTGTISICASNVLKSNDVHIIGIDICESSIISANKNAKMNNINNYKFLHGRVEEFFQ 765

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSL 328
              +  + N                VDPPR+GL ++ + ++ A+     I+Y+SCNP +L
Sbjct: 766 KEIKNIQTNN---------ANIICIVDPPRNGLANSVLNILSAHHLINQIIYVSCNPITL 816

Query: 329 CRDLS---ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +++    L+ T  I+ +A  D FP+T H+EC   +V+K
Sbjct: 817 INNVTNILFLNETLKIKNMAFVDMFPHTFHLECITNIVKK 856


>gi|240141134|ref|YP_002965614.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens
           AM1]
 gi|240011111|gb|ACS42337.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens
           AM1]
          Length = 427

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 113/329 (34%), Gaps = 36/329 (10%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R   H+          +   ++   + ID+       ++       A        R  
Sbjct: 114 RRRITLHVREIEGRARAGLMAARSHALVPIDHCPITVPSLHRAPAVAEALAAPLGHGRKP 173

Query: 104 LFQIDYLTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           L   D   + +   + + +  H  + D  R    RL   L   +  I             
Sbjct: 174 L---DIAATATVTGLDIDIRGHGQVSDGVRGVLTRLAGELDLARLSIH------------ 218

Query: 163 DRDYVDERLTVAGRTLIYR--QIENSFTQPNAGINVHMLEWVLAATKGIQG---DLLELY 217
             D V ER   A      R      SF Q        +   VL A    +     + +L+
Sbjct: 219 -GDVVVERRPPAVGEGPARRVPSPGSFLQATQAGEATLTALVLEAMDEGKAKVRRVGDLF 277

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG+G F+L LA     V A +    ++ A      A         R++++         R
Sbjct: 278 CGSGPFALTLAAGAREVHAADGEAAAITALTRAYRA----GAGYARITAE--------AR 325

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL- 335
           +  R   +         +  DPPR+G +     + +   P ++ ++C+P +  RD + L 
Sbjct: 326 DLFRRPLLGPELDALDAVVFDPPRAGAEAQVRRIAESKVPLVVAVACDPGTFARDAATLI 385

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  + +ER+   DQF ++ H+E   +  +
Sbjct: 386 AGGYRLERVTPVDQFAWSAHVELVGVFRK 414


>gi|227875491|ref|ZP_03993631.1| tRNA (uracil-5-)-methyltransferase [Mobiluncus mulieris ATCC 35243]
 gi|227843827|gb|EEJ53996.1| tRNA (uracil-5-)-methyltransferase [Mobiluncus mulieris ATCC 35243]
          Length = 416

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 137/379 (36%), Gaps = 76/379 (20%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEP-IHY--------RMRAEFHIWHDGDDL 58
           Y  QL  K + L + +       L  ++ R  P            R R  F +       
Sbjct: 90  YPAQLRWKREVLAEALRRNGSEALVAEVSRVAPDWSVASLGASPGRSRVSFAL---DSAG 146

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           + +M +  T  + RI  F             ++A +    L   KL              
Sbjct: 147 FPVMSEAGTHRQHRISSFP-----------LLVANLEGLRLFDRKLAF------------ 183

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD------ERLT 172
                             R++    +    +  +G         D D+V       E + 
Sbjct: 184 --------------APGSRVKAVAPSASAPVFAVGSE-----VFDADFVPTTPRVREVVR 224

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
           V      YR   +SF Q +      ++E +LA    I G ++LELY G+G FS+ LA   
Sbjct: 225 VGAWEHTYRIFASSFWQTDYRAPAVLVEALLAGVGDISGFEVLELYAGSGLFSVFLAEAI 284

Query: 232 D---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               R+  VE  + +V++A YN+      + +  R+     +    R  +F +       
Sbjct: 285 GDSGRLTTVEGDRVAVKSAGYNLQHAGFEDTR-SRVERAAVSARFLRGLDFGQ------R 337

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLA 345
             R   +  DPPRSGL     G +       +  ISC+P S  RDL  L    + ++   
Sbjct: 338 FMRGTLVVADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGYRLQSFR 397

Query: 346 LFDQFPYTRHMECGVLLVR 364
           +FD FPYT+H+E   +L R
Sbjct: 398 VFDLFPYTQHVEVLSVLGR 416


>gi|88704246|ref|ZP_01101960.1| tRNA (uracil-5-)-methyltransferase/TrmA [Congregibacter litoralis
           KT71]
 gi|88701297|gb|EAQ98402.1| tRNA (uracil-5-)-methyltransferase/TrmA [Congregibacter litoralis
           KT71]
          Length = 393

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 133/372 (35%), Gaps = 85/372 (22%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN--LQIFRSE-PIHYRMRAEFHIWHDGDDL 58
               L   Y +QL  K   +++++      +    I+ S   + YR R +F      D  
Sbjct: 98  GCPWLFMDYSEQLMRKEQLVKKVLQPLGEKHSVADIWPSPAELGYRNRGQF----KSDGQ 153

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
                   ++E   I   +  +      + ++++ +                        
Sbjct: 154 RLGFVAGSSREIAEIHDCLVLNDKNRQTLRDLLSQLP----------------------- 190

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
                    + AW+    R    L                        +D+ +T +  T+
Sbjct: 191 ---------NPAWKPDRARRWTTLD-----------------------IDDHITASEVTV 218

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAA--TKGIQGDLLELYCGNGNFSLVLARH-FDRVL 235
             R+    F Q N+  N  M  W+ A     G    +LEL+ G+GNF+ VL       ++
Sbjct: 219 NQRRP---FRQGNSAQNQSMRAWLKARVLEAGPPDHVLELFAGSGNFTEVLEEAGCKHIV 275

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AV+   P++E     +    +  V         F   + R     +L++  + +     +
Sbjct: 276 AVDSFLPAIER----LKERDLTGV-------TSFGCNLDRGDSAAKLQEPLVIA---SLL 321

Query: 296 FVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPY 352
            +DPPR GL +    +    A   I+YISC+P +L RDL + +     ++ +   D FP 
Sbjct: 322 LLDPPRDGLKNIGDYLKAAPALRTIIYISCDPATLARDLKVAVEQGFELQEVQPLDLFPQ 381

Query: 353 TRHMECGVLLVR 364
           T H+E   +L R
Sbjct: 382 TPHVETLTVLRR 393


>gi|116670204|ref|YP_831137.1| deoxyribonuclease [Arthrobacter sp. FB24]
 gi|116610313|gb|ABK03037.1| deoxyribonuclease/rho motif-related TRAM [Arthrobacter sp. FB24]
          Length = 453

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 119/340 (35%), Gaps = 57/340 (16%)

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           + +R RA F +   G      M   ++ + + I         IN L              
Sbjct: 151 LGWRTRASFAVTPAGKL---GMHAHRSDQVIAIREMPLTVSAINDL-------------- 193

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLL---DDAWRECAIRLRDALHARKYQIQLIGR--A 155
             +L+ ID    +  +        R L     A    A RL   L     ++ +     A
Sbjct: 194 --RLWDIDLAGVERVEVAAPANGSRPLVLLAPAEGTRAKRLSGILAQLPDEVSVASFDPA 251

Query: 156 NKTKICL-DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG-----I 209
               + L  R +V E    +     +R     F Q +      ++  +            
Sbjct: 252 KGESLQLRGRTWVQE----SAAGHEFRVTGEGFWQIHRDAPETLVGALKGFLHDGGYLEP 307

Query: 210 QGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
              + +LY G G F+  LA        VL+VE A  +   AR N+  +    V+IV+   
Sbjct: 308 GAVVADLYAGAGLFTAALADAVGVTGSVLSVEGAPGTSRDARKNL--HGAPQVEIVQGRV 365

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCN 324
           +   +   R                F  + +DPPR+G   A V  ++ A P  I Y+SC+
Sbjct: 366 ERVLRQKPR---------------NFDALVLDPPRAGAGKAVVSQLMAAGPRAIAYVSCD 410

Query: 325 PDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           P S  RDL         +  L  FD +P+T HME   LL 
Sbjct: 411 PASFARDLGYFRQGGWQLAGLRAFDLYPHTHHMETVALLT 450


>gi|134098393|ref|YP_001104054.1| 23S rRNA methyltransferase/RumA [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006905|ref|ZP_06564878.1| 23S rRNA methyltransferase/RumA [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911016|emb|CAM01129.1| 23S rRNA methyltransferase/RumA [Saccharopolyspora erythraea NRRL
           2338]
          Length = 410

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 116/366 (31%), Gaps = 71/366 (19%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQI-FRSEP---IHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   + + +      +L +  R  P   + +R RA   +   G          +
Sbjct: 100 ETQRELKSAVVTEQLKRIAGIDLPVRVRELPGGLLRWRTRARVAVDRGG---RAGFRAHR 156

Query: 67  TKERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           +   +  +      +  I  +                   +++     +DQ  VT     
Sbjct: 157 SHRVVPAEDCPITVAEAIQDVTSRRWRPGS----------EVEVAADSADQVHVT----- 201

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
                             A   +      + + +         E          +     
Sbjct: 202 ------------------AHDRRRGGRRVSRQVR---GSGVAHEE----AAGRTWELAAQ 236

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD---RVLAVEIAK 241
            F Q +          V       +G +  +LY G G F+  LA        VL VE ++
Sbjct: 237 GFWQVHVAAADTFAAVVSRMAAAPEGGVAWDLYGGVGLFAAGLAEQVGPTGSVLLVESSR 296

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +VE A  N+    +  V+    ++++  +              D        + +DPPR
Sbjct: 297 RAVEDAVSNLR--DLPQVEFRAGTAEDVVR--------------DEGLPSPDVVVLDPPR 340

Query: 302 SGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
            G        V A+    I++++C+P +L RD+ +     + +  +  FD FP T H+EC
Sbjct: 341 KGAGREVAEAVCAHRPSRIVHVACDPAALARDVGLFVEGGYRLVEIEAFDAFPMTHHVEC 400

Query: 359 GVLLVR 364
             LL R
Sbjct: 401 IALLER 406


>gi|149204354|ref|ZP_01881321.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp.
           TM1035]
 gi|149142239|gb|EDM30286.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp.
           TM1035]
          Length = 407

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/352 (19%), Positives = 126/352 (35%), Gaps = 32/352 (9%)

Query: 16  EKVDRLRQMMLAFQ-VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            K + +R  + A   V   Q   + P   R RA F               + +   + + 
Sbjct: 80  WKQEVVRAALAAHGIVAEFQPIHTSPPRSRRRATFAAKRTKKGAMAGFHARGSDVIIEVP 139

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI-VTLIYHRLLDDAWRE 133
                 LL   +M  +     L     ++   +    ++S   + V +   + LD     
Sbjct: 140 DC---HLLHPEVMRGLSVACDLAETGTSRKAALAVSVTRSLVGLDVAVTDGKPLDGP--- 193

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               LR AL A   +  L   A + ++ + R    +    A           +F Q  A 
Sbjct: 194 ----LRVALAALAERHDLARLAWEDEVVVTRRAPVQVFGGARVV----PPPGAFLQATAE 245

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               +L             +++L+ G G F+L LA+   +V AVE     +  A  +   
Sbjct: 246 GEAALLAQ-TETILAGARRIVDLFAGCGTFALPLAQRA-QVHAVEGEAEML--AALDAGR 301

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                +  +   +++     RR    + L        R+    +DPPR+G +     + +
Sbjct: 302 RGAAGLYPLSTEARDL---FRRPLLADELA-------RYDGAVIDPPRAGAEAQIAEIAR 351

Query: 314 AY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           A  P ++Y+SCNP +  RD   L +  + +  + + DQF ++ H+E      
Sbjct: 352 ARLPRLVYVSCNPLTFARDAKTLIAAGYVMGPVRVVDQFRWSTHVELVAGFT 403


>gi|314923388|gb|EFS87219.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL001PA1]
          Length = 393

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+   K  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTAHVGQRRWKVGAGGFWQMHPGAAEALADAVIGGLKPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRRGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|269977261|ref|ZP_06184234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mobiluncus mulieris
           28-1]
 gi|269934564|gb|EEZ91125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mobiluncus mulieris
           28-1]
          Length = 414

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 135/379 (35%), Gaps = 78/379 (20%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEP-IHY--------RMRAEFHIWHDGDDL 58
           Y  QL  K + L + +       L  ++ R  P            R R  F +       
Sbjct: 90  YPAQLRWKREVLAEALRRNGSEALVAEVSRVAPDWSVASLGASPGRSRVSFAL---DSAG 146

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           + +M +  T  + RI  F             ++A +    L   KL              
Sbjct: 147 FPVMSEAGTHRQHRISSFP-----------LLVANLEGLRLFDRKLAF------------ 183

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD------ERLT 172
                             R++    +    +  +G         D D+V       E + 
Sbjct: 184 --------------APGSRVKAVAPSASAPVFAVGSE-----VFDADFVPTTPRVREVVR 224

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH- 230
           V  R   YR   +SF Q +      ++  +LA    I   ++LELY G+G FS+ LA   
Sbjct: 225 VGAREHTYRIFASSFWQTDYRAPAVLVGELLAGVGDISDFEVLELYAGSGLFSVFLAEAV 284

Query: 231 --FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               R+  VE    +V++A YN+          V +S +    + R    F R  D    
Sbjct: 285 GAAGRLTTVEGDALAVKSAGYNLKHAG-----FVGVSVERAAVSAR----FLRGVDFGQR 335

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLA 345
             R   +  DPPRSGL     G +       +  ISC+P S  RDL  L    + ++   
Sbjct: 336 VSRGSLVVADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGYRLQSFR 395

Query: 346 LFDQFPYTRHMECGVLLVR 364
           +FD FPYT+H+E   +L R
Sbjct: 396 VFDLFPYTQHVEVLSVLGR 414


>gi|158424731|ref|YP_001526023.1| putative RNA methyltransferase [Azorhizobium caulinodans ORS 571]
 gi|158331620|dbj|BAF89105.1| putative RNA methyltransferase [Azorhizobium caulinodans ORS 571]
          Length = 406

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/324 (19%), Positives = 111/324 (34%), Gaps = 31/324 (9%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R RA FH    G        ++++   + +      S  ++  +    A       ++  
Sbjct: 111 RRRAIFHARQLGRRTVVGFAERKSHAMVPVTECPVLSPALDQALPVARAVAEALAEMKKP 170

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           L    ++T+      + +     L          L D              A  T+    
Sbjct: 171 L--DLHVTATESGLDLDVRGSGPLSPMILMDLAALADR----------FDLARLTRH--G 216

Query: 164 RDYVDERLTVAGRTL-IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
              V  RL      L        SF Q        +L   +         + +L+CG G 
Sbjct: 217 EMVVQRRLPFLPMGLARVELPPASFLQA-TAAGEALLAQAVGEGVEGARSVADLFCGVGT 275

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+L LA H  RV   E  + ++ A     A      +K V    ++     RR      L
Sbjct: 276 FALRLASHA-RVRGYESNETAITALLK--AIRGTQGLKSVEGEVRDL---FRRPLMAQEL 329

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHT 340
           +       +F+ + +DPPR G +     + +     ++Y+SC+  +  RD  +L      
Sbjct: 330 E-------KFEAVVIDPPRQGAEAQARELARSKVERLVYVSCSAQTFARDARLLIDGGFR 382

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +ER+  +DQF Y+ H+E      R
Sbjct: 383 LERVTPYDQFRYSPHVELVGHFHR 406


>gi|315634838|ref|ZP_07890120.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter segnis
           ATCC 33393]
 gi|315476390|gb|EFU67140.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter segnis
           ATCC 33393]
          Length = 391

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 137/400 (34%), Gaps = 57/400 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y  QL +K   L+Q +   +  +L     F+S    +R +A+  +    +  
Sbjct: 14  SCQWLELPYAVQLEQKTAHLQQQLQGLETSHLIWFAPFQSAQEGFRNKAKMVVSGAVERP 73

Query: 59  YHIMFD-----QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLF 105
              +       Q   +      +      I  L+ + +A   L P         L+  L 
Sbjct: 74  ILGILPNPLAPQSAVDLCDCPLYPQRFQAIFPLLKDFIARAGLVPYNVAKQKGELKHLLL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA-----RKYQIQLIGRANKTKI 160
                + Q     V     +L     +     LR  L          Q Q        K 
Sbjct: 134 TESQHSHQLMLRFVLRSEAKL--PLIQRELAGLRQKLPQLAVISVNIQPQNAAILEGEK- 190

Query: 161 CLDRDYVDERLTVAGR--TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELY 217
                ++ E+ T+  R   +        F Q N  +   +        K +    L +L+
Sbjct: 191 ---EIFLTEQHTLPERFNQIPLFIRPQGFFQTNPQVAEGLYGTAQQWIKDLPIRQLWDLF 247

Query: 218 CGNGNFSLVLARHFD--------RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
           CG G F L   +            +  +EI+  ++ AA+ +     +   V    + +  
Sbjct: 248 CGVGGFGLHCLKALQMQNTEQQIHLTGIEISASAIAAAKLSAQQLGLEKQVHFQSLDAAN 307

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPD 326
           F  A                + +   + V+PPR G+  +    +       ILY SCN +
Sbjct: 308 FALA---------------QADKPDLVIVNPPRRGIGQSLAEFLNEMRPHFILYSSCNAE 352

Query: 327 SLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           ++ +DL  L+  + +E++ LFD FP+T H E  VLL   P
Sbjct: 353 TMGKDLQSLTH-YQMEKIQLFDMFPHTSHYEVLVLLRLTP 391


>gi|84685766|ref|ZP_01013662.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665859|gb|EAQ12333.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Rhodobacterales
           bacterium HTCC2654]
          Length = 403

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/355 (20%), Positives = 128/355 (36%), Gaps = 35/355 (9%)

Query: 15  AEKVDRLRQMMLAFQ-VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             KV  + Q + A      ++   + P + R RA   +              ++     I
Sbjct: 79  QWKVGIVEQALTAQGLTTEIRGIATSPPNSRRRATLAVRRTKKGALVGFHAPKSDVITPI 138

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI-VTLIYHRLLDDAWR 132
                  LL  ALM  +     L  +  ++  ++    ++S+  + +++   + LD    
Sbjct: 139 PNC---HLLTPALMSALPIGDALATVGGSRKGEVKMTVTESEAGLDISVSGGKPLD---- 191

Query: 133 ECAIRLRDALHARKYQIQLIGRA-NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
              ++L   L     +  +   A +   + + R     R   A  T        +F Q  
Sbjct: 192 ---LKLETELAGIAGEFDVARLAWDGEVVAMARPPAQ-RFGSALVT----PPPGAFLQAT 243

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +   VL A  G    +++L+ G+G F+L +A     VLAVE             
Sbjct: 244 KPGETALTAAVLEA-VGNASRVIDLFSGSGTFTLPIAERAG-VLAVEGV-----DDMLTA 296

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                 + K +     E     RR    + L        R   + +DPPR+G +   V +
Sbjct: 297 LDAGWRHSKGLHAVKTETRDLFRRPLLSDEL--------RADAVVIDPPRAGAEAQMVEI 348

Query: 312 VQ-AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
                P I  +SCNP +  RD  IL+   +T+  L + DQF ++ H+E      R
Sbjct: 349 AASGVPRIAAVSCNPVTFARDAKILTDARYTLNWLVVVDQFRWSPHVELAACFTR 403


>gi|163853709|ref|YP_001641752.1| (Uracil-5)-methyltransferase [Methylobacterium extorquens PA1]
 gi|163665314|gb|ABY32681.1| (Uracil-5)-methyltransferase [Methylobacterium extorquens PA1]
          Length = 431

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 113/329 (34%), Gaps = 36/329 (10%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R   H+          +   ++   + ID+       ++       A        R  
Sbjct: 118 RRRITLHVREIEGRARAGLMAARSHALVPIDHCPITVPGLHRAPAVAEALAAPLGHGRKP 177

Query: 104 LFQIDYLTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           L   D   + +   + + +  H  + D  R    RL   L   +  I             
Sbjct: 178 L---DIAATATVTGLDIDIRGHGQVSDGVRGVLTRLAGELDLARLSIH------------ 222

Query: 163 DRDYVDERLTVAGRTLIYR--QIENSFTQPNAGINVHMLEWVLAATKGIQG---DLLELY 217
             D V ER   A      R      SF Q        +   VL A    +     + +L+
Sbjct: 223 -GDVVVERRPPAVGEGPARRVPSPGSFLQATQAGEATLTALVLEAMDEGKAKVRRVGDLF 281

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG+G F+L LA     V A +    ++ A      A         R++++         R
Sbjct: 282 CGSGPFALTLAAGAREVHAADGEAAAITALTRAYRA----GAGYARITAE--------AR 329

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL- 335
           +  R   +         +  DPPR+G +     + +   P ++ ++C+P +  RD + L 
Sbjct: 330 DLFRRPLLGPELDALDAVVFDPPRAGAEAQVRRIAESKVPLVVGVACDPGTFARDAATLI 389

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  + +ER+   DQF ++ H+E   +  +
Sbjct: 390 AGGYRLERVTPVDQFAWSAHVELVGVFRK 418


>gi|82595216|ref|XP_725756.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480877|gb|EAA17321.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 732

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/442 (17%), Positives = 152/442 (34%), Gaps = 99/442 (22%)

Query: 4   TLLIDQYEQQLAEKVDRLR-QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           T   D  E  L EK+ +   Q+       +  I       YR + EF I +D ++   I 
Sbjct: 299 TFNDDNNECSLEEKLKKYNFQIDSPLYPSDKNIN-----GYRNKCEFTISYDENNNVEIG 353

Query: 63  F-----------------------------------------DQQTKE-------RMRID 74
           F                                         +++ K+          ID
Sbjct: 354 FVVGKVKTNMNETNDDNNCNFSENNISNNQSPVNESHQTKLRNKKQKQCYFLNPIVKSID 413

Query: 75  YFMPGSLLINALMIEMMATIRLEPL------LRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             +     +  ++ EM + I+           +  ++++  +   S + ++  +    LD
Sbjct: 414 DCIHIHSCMKEVVKEMKSIIKDSNYPVFDRVYKTGIWRLLVIRLNSKKELMITVQTYSLD 473

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICL-----------------DRDYVDERL 171
              +    RL      +K     I  +N   + L                 +  +  E L
Sbjct: 474 QKKKREIKRLLINRLTKKKDESYIEFSNFKVVSLYLQEHGNSNDSTNQSENEHLWGVEHL 533

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA---TKGIQGDLLELYCGNGNFSLVLA 228
                   +    + F Q N      + + V+      K ++  + +L CG G  S+ +A
Sbjct: 534 EEIILGNKFLITPSCFFQVNHTSCEILYKKVIDYVNINKNMKNYIFDLCCGTGTISICIA 593

Query: 229 RHFDR----VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
                    ++ ++I + S+ +A  N   N + N K ++   +E             +K+
Sbjct: 594 NALKHEDMHIVGIDICEESIISANQNAQINKIKNYKFIKGRVEELFA--------GEIKN 645

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSL---CRDLSILSTT 338
           I   +     + VDPPRSGL  + +  + +      I+Y+SCNP +L     +L  ++  
Sbjct: 646 ISQQNCNI-IVIVDPPRSGLAQSVINTLSSIHPINQIIYVSCNPSTLINNVTNLLFMNEY 704

Query: 339 HTIERLALFDQFPYTRHMECGV 360
             I+ L   D FP+T H+EC  
Sbjct: 705 FKIKNLVFVDMFPHTYHLECIT 726


>gi|319406943|emb|CBI80580.1| putative enzyme [Bartonella sp. 1-1C]
          Length = 417

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 138/371 (37%), Gaps = 30/371 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHY-RMRAEFHIWHDGDDLYH 60
              L    ++   + K   +      + +  +     E  +Y R R     +        
Sbjct: 70  GCMLQHWHFDAYRSWKRQLVVDAFKRYDLNAVISPLIECGNYTRRRVTLTAYVIQKKHIV 129

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
                ++ + + I         I + + ++ A   L     AK F +  +T+  +   V 
Sbjct: 130 GFNRYRSHDIIAIKECPVTRSEILSKLDDIRAICALLR-NNAKPFHV-TVTAVENGFDVA 187

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L    + ++  R+  IR+  +    +  +       + +I +++    E+  +    +  
Sbjct: 188 LSNCIVQNEFTRQKMIRVALSCGITRLSV-------EGEILVEQ----EKPVIHFGDVCV 236

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
                 F Q        M E ++ A      +  +L+ G G F+L +A+  + V A+E  
Sbjct: 237 EFPIGGFLQATFEAETVMGE-IILAHFKKAKNAADLFAGVGTFALRMAKKMN-VHAIENN 294

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +            + N+      +      +  +R+  R          F ++  DPP
Sbjct: 295 GEA------------LANLDQAARIATGLKTVVCEKRDLFRCPLSAKELECFDSVVFDPP 342

Query: 301 RSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMEC 358
           RSG +     + +A    ++ +SCNP +L RDLS+L +  + IE++   DQF ++ H+E 
Sbjct: 343 RSGAEKQVNELAKATVARVVAVSCNPITLARDLSLLVAGGYIIEKVVPIDQFLWSPHIEV 402

Query: 359 GVLLVRKPSGW 369
              L ++ +  
Sbjct: 403 VATLRKQKTKK 413


>gi|330723828|gb|AEC46198.1| Uncharacterized RNA methyltransferase [Mycoplasma hyorhinis MCLD]
          Length = 363

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/287 (26%), Positives = 116/287 (40%), Gaps = 28/287 (9%)

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDA 141
           N   I++   I +E     K F+     +  D A+     H    LDD        L D 
Sbjct: 100 NIAKIDLDKEINIEYFQGNKEFRYRNKITLFDGALYQKKTHNKIYLDDFL------LTDI 153

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR-TLIYRQIENSFTQPNAGINVHMLE 200
                 + ++I R    K+ +      E         L +R   NSF Q N  +  H  +
Sbjct: 154 KPKTNLKGKIILR-KLNKLIIGSKKDIELFNFDDLLGLRFRININSFYQVNKEVAQHAYQ 212

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            ++   +     +L+LY G G  SL++A+   +V+AVE  K + + A +N   N +NNV 
Sbjct: 213 RIIDFVQEGDF-VLDLYSGIGTISLLVAQKAKKVIAVEENKFAHKDALFNQKINKINNVS 271

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHI 318
                  EF            LKD D       TI VDP R G+  A +  +       I
Sbjct: 272 FKNKEVFEF------------LKDFD---DLVDTIIVDPAREGVQKAAIKEILRLNPKRI 316

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +Y+SCNP +   D S+L   + I    + + F  T H+E  + L RK
Sbjct: 317 IYLSCNPATQAYDFSLLKHKYKIIFFEIHNMFVKTFHIENLICLERK 363


>gi|294892742|ref|XP_002774211.1| RNA m5u methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239879428|gb|EER06027.1| RNA m5u methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 517

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 99/249 (39%), Gaps = 54/249 (21%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------------- 212
           Y D R+ +    L +     SF Q N  +   +    +        D             
Sbjct: 33  YGDTRVMMDMLGLEFPLQPASFFQTNVVMCKKLYIMAVRLALTGSPDGDDLPKLEELDSA 92

Query: 213 -----LLELYCGNGNFSLVLA-------RHFDRVLAVEIAKPSVEAARYNIAANHVNN-V 259
                ++++  G G  + V A           RV  +E+   +VE A+ +  AN +++ V
Sbjct: 93  KMPAAVVDVCSGVGTITQVFACILGPKPDGKPRVYGLELVPDAVEDAKASARANKLDSSV 152

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--- 316
           + +   ++E  + + +E         DI   +  T+ VDPPRSGL    +  ++      
Sbjct: 153 RFIAGRAEETIEDVIKE------ACSDIQGDQKLTVIVDPPRSGLHPNVLRCLRRCSFIN 206

Query: 317 HILYISCNPDSLCRDLSILSTT---HT----------------IERLALFDQFPYTRHME 357
            I+Y+SCNPD+L RD+  L+     +T                 + +   D FP+T H E
Sbjct: 207 RIVYVSCNPDTLSRDVIQLTKPEADYTAAGGQEGMKEEGGILVPKIIVPIDMFPHTYHCE 266

Query: 358 CGVLLVRKP 366
             +LL R+P
Sbjct: 267 AMLLLDREP 275


>gi|56694957|ref|YP_165302.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ruegeria pomeroyi
           DSS-3]
 gi|56676694|gb|AAV93360.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ruegeria pomeroyi
           DSS-3]
          Length = 417

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 119/358 (33%), Gaps = 42/358 (11%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K + +R  + A  +  +   +  S P   R RA   +             + +     
Sbjct: 87  EWKQEVVRAALAAQGIEAVMRPVHTSPPQS-RRRATIAVRRTKKGALAGFHGRASDVITE 145

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLL-----RAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           I          + L   ++A I +   L       K      LT       V +   + L
Sbjct: 146 IPDC-------HLLDPALLAAIPMAEALAMLGGSRKGVMAVTLTLSVAGLDVAVRGGKPL 198

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D        +L +     +   +    A   +    +++    +              +F
Sbjct: 199 DGPLEVALGQLAEVQGLARLAWEDEVIA--MRHPPAQNFGKAAVVP---------PPGAF 247

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            Q        +L  V     G +  + +L+ G G F+L LA     V AVE      E+A
Sbjct: 248 LQATRDGEQALLAAVRETIAGAR-RVADLFAGCGTFALPLAETA-EVHAVEG-----ESA 300

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                       + ++  + E     RR    + L         F  + +DPPR+G +  
Sbjct: 301 MTAALDRGWRRAQGLKRVTTEARDLFRRPLLPDELAA-------FDAVVLDPPRAGAEAQ 353

Query: 308 TVGMVQAYPHIL-YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
              + +A P ++ Y+SCNP +  RD   L    +++  + + DQF ++ H+E      
Sbjct: 354 VAELARAKPPVIAYVSCNPVTFARDAKTLVQAGYSLNWVQVVDQFRWSAHVELAAAFS 411


>gi|282853991|ref|ZP_06263328.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes J139]
 gi|282583444|gb|EFB88824.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes J139]
 gi|314981068|gb|EFT25162.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL110PA3]
 gi|315091893|gb|EFT63869.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL110PA4]
 gi|315103395|gb|EFT75371.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL050PA2]
          Length = 393

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+   K  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTAHVGQRRWKVGAGGFWQMHPGAAEALADAVIGGLKPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRRGAGKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|326773475|ref|ZP_08232758.1| tRNA (Uracil-5-)-methyltransferase [Actinomyces viscosus C505]
 gi|326636705|gb|EGE37608.1| tRNA (Uracil-5-)-methyltransferase [Actinomyces viscosus C505]
          Length = 465

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 120/333 (36%), Gaps = 55/333 (16%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R    +  DG      M   ++   + +         I  + +   +  R     R  
Sbjct: 175 RTRVSLTVGEDGRP---GMHAFRSGTVLPLRRLPLAVEAITEIGLLERSRWRAH--YRPG 229

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +I+ +     + +V L    L   A      R+R+ + A    +              
Sbjct: 230 M-RIEAIAPSGGEPVVLLGERLLTAQARSTGRRRVREVVDASALGL-------------- 274

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELY 217
                         L Y      F Q +      ++E V+    G   D      +LELY
Sbjct: 275 ------------GELTYSVHAEGFWQVHVDAPRVLVERVVRGALGADLDGAAGSRVLELY 322

Query: 218 CGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
            G G F+L LA        V+++E  + +V  AR       +++    R++S   +    
Sbjct: 323 SGAGLFTLPLAALVGSGGEVVSLEGNEQAVRDARRT-----LHDQPTARLASGRVSARSV 377

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
           RE   +      +   R   + +DPPR G     +  V A     I+ ++C+P +L RDL
Sbjct: 378 RELAGS------LTGGRPDVVVLDPPRQGAGREVIEAVGALGAERIVLVACDPAALARDL 431

Query: 333 S-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             +L + + +  ++  D FP+T H E   +L R
Sbjct: 432 GTLLRSGYALGSMSALDMFPHTHHFETIAVLER 464


>gi|77464781|ref|YP_354285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides 2.4.1]
 gi|77389199|gb|ABA80384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides 2.4.1]
          Length = 404

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 129/354 (36%), Gaps = 32/354 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K + +R  +    +      +  S P   R RA                 +Q+   + 
Sbjct: 77  DWKQEVVRSALAGQGIEAPFRPLAVSPPAS-RRRATLSARRTKGGALVGFHARQSGTIVA 135

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I         + A M  + A ++       +L     +T       V +   + LD   R
Sbjct: 136 IPECKLLHPDLMAAMPALEALVKTGGSRSGEL--SLTVTRSLGGPDVAVTGGKPLDAGLR 193

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
               ++ +A    +   +    A   ++   + +   R+             ++F Q  A
Sbjct: 194 AALAQVAEAQALARLTWEGETIA--LRVPPAQAFGPARVVP---------PPSAFLQATA 242

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +L  V  A  G    + +L+ G G FSL LA     V AVE        A  +  
Sbjct: 243 EGEAALLSAVRDAI-GEARTVTDLFGGAGTFSLPLA-AGAEVHAVEGDAAM--MAALDRG 298

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +K V + +++     RR  E + L+       + + + +DPPR+G +  T  + 
Sbjct: 299 WRQAPGLKRVTVETRDL---FRRPLEPDELR-------KTEAVVIDPPRAGAEAQTRALA 348

Query: 313 QA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +A  P + ++SCNP +  RD  IL    + ++ + + DQF ++ H+E      R
Sbjct: 349 RAAVPVVAFVSCNPVTFARDALILVRGGYRLDWVQVVDQFRWSSHVELAARFSR 402


>gi|115523085|ref|YP_779996.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
 gi|115517032|gb|ABJ05016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas
           palustris BisA53]
          Length = 411

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 133/363 (36%), Gaps = 37/363 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
            D+Y+   A K + + + +           +  +     R R   H      ++  + F 
Sbjct: 81  ADRYQ---AWKRELVVEALSQAGIDCEVAPLIDAHGQG-RRRITLHARKGTHEVLKVGFA 136

Query: 65  Q-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
              + + + ID       L  AL   + A   L   L  +   +D   + +D+ +   I 
Sbjct: 137 AAGSHDIVPIDRCPI---LDPALDGALDAAWALAEPLTTEAKPLDIQVTAADEGLDVDIR 193

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
                      + R+   L     Q +L       ++ L R     ++  A  TL     
Sbjct: 194 GS------GPVSSRMLTTLSKLAEQHRLARLTRHGELVLMRTPPTIQVGAARLTL----P 243

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             +F Q        + + V +   G   ++++L+CG G F+L LA    RV A +    +
Sbjct: 244 PGAFLQATRAGEETLADLV-SERCGKAKNVVDLFCGVGPFALRLATKA-RVAAYDSEASA 301

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + A +       +  + I      E     RR     +L+D+D        +  DPPR G
Sbjct: 302 IAALQKAAGTPGLKPMTI------EIRDLFRRPLVPQQLEDVDA-------VVFDPPRQG 348

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
                  + ++  P I+ +SCN  +  RD  +L    + I++L   DQF +T H+E    
Sbjct: 349 AQAQCQQLAKSRVPLIVAVSCNAATFARDARLLLDGGYRIDQLTPVDQFRHTPHVELVAR 408

Query: 362 LVR 364
             +
Sbjct: 409 FRK 411


>gi|110677801|ref|YP_680808.1| RNA methyltransferase, putative [Roseobacter denitrificans OCh 114]
 gi|109453917|gb|ABG30122.1| RNA methyltransferase, putative [Roseobacter denitrificans OCh 114]
          Length = 408

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 129/352 (36%), Gaps = 30/352 (8%)

Query: 15  AEKVDRLRQMMLAFQVPNLQI-FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             KVD +RQ +    +  + +  R+ P   R RA F               + +   + +
Sbjct: 79  DWKVDVVRQALANHGIETVFLPIRTSPAKSRRRAGFAARRTKKGALVGFHGRASDTIIPV 138

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +        +      +   + L   +R     +    ++S    V     + LD   R+
Sbjct: 139 ERCEILDPAVLQ-GARIAEELALAGAIRKTALAVSVTLTKSGLD-VAASKGKPLDGPLRQ 196

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               + +A    +        A +T    + D +D                 +F Q  A 
Sbjct: 197 RLAAICEAQVIARLSWDDEVVAMRTPPQYEFDGID-----------VAPPPGAFLQATAH 245

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               +L  V   T+   G +++L+ G G F+L LAR    V AVE        A  +   
Sbjct: 246 GEAALLAAVRDITQD-AGRIVDLFAGCGTFALPLARRC-EVHAVEGDGDMT--AALDAGW 301

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            H   +K V   +++            R   + +   R   + +DPPR+G +   V + +
Sbjct: 302 RHAQGLKNVTTETRDLF----------RRPLVPMELTRVDAVVLDPPRAGAEAQVVELAE 351

Query: 314 A-YPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLV 363
           A  P + Y+SCNP +  RD ++L    + ++ + + DQF ++ H+E      
Sbjct: 352 AAVPRLAYVSCNPVTFARDAAVLCAAGYVLDWVQVVDQFRWSAHVELAASFT 403


>gi|218532567|ref|YP_002423383.1| (uracil-5)-methyltransferase [Methylobacterium chloromethanicum
           CM4]
 gi|218524870|gb|ACK85455.1| (Uracil-5)-methyltransferase [Methylobacterium chloromethanicum
           CM4]
          Length = 431

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 113/329 (34%), Gaps = 36/329 (10%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R   H+          +   ++   + ID+       ++       A        R  
Sbjct: 118 RRRITLHVREIEGRARAGLMAARSHALVPIDHCPITVPSLHRAPAVAEALAAPLGHGRKP 177

Query: 104 LFQIDYLTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           L   D   + +   + + +  H  + D  R    RL   L   +  I             
Sbjct: 178 L---DIAATATVTGLDIDIRGHGQVSDGVRGVLTRLAGELDLARLSIH------------ 222

Query: 163 DRDYVDERLTVAGRTLIYR--QIENSFTQPNAGINVHMLEWVLAATKGIQG---DLLELY 217
             D V ER   A      R      SF Q        +   VL A    +     + +L+
Sbjct: 223 -GDVVVERRPPAVGEGPARRVPSPGSFLQATQAGEAILTALVLEAMDEGKAKVRRVGDLF 281

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG+G F+L LA     V A +    ++ A      A         R++++         R
Sbjct: 282 CGSGPFALTLAAGAREVHAADGEAAAITALTRAYRA----GAGYARITAE--------AR 329

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL- 335
           +  R   +         +  DPPR+G +     + +   P ++ ++C+P +  RD + L 
Sbjct: 330 DLFRRPLLGPELDALDAVVFDPPRAGAEAQVRRIAESKVPLVVGVACDPGTFARDAATLI 389

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  + +ER+   DQF ++ H+E   +  +
Sbjct: 390 AGGYRLERVTPVDQFAWSAHVELVGVFRK 418


>gi|254563645|ref|YP_003070740.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens
           DM4]
 gi|254270923|emb|CAX26928.1| 23S rRNA (Uracil-5-)-methyltransferase [Methylobacterium extorquens
           DM4]
          Length = 427

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 113/329 (34%), Gaps = 36/329 (10%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R   H+          +   ++   + ID+       ++       A        R  
Sbjct: 114 RRRITLHVREIEGRARAGLMAARSHALVPIDHCPITVPSLHRAPAVAEALAAPLGHGRKP 173

Query: 104 LFQIDYLTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           L   D   + +   + + +  H  + D  R    RL   L   +  I             
Sbjct: 174 L---DIAATATVTGLDIDIRGHGQVSDGVRGVLTRLAGELDLARLSIH------------ 218

Query: 163 DRDYVDERLTVAGRTLIYR--QIENSFTQPNAGINVHMLEWVLAATKGIQG---DLLELY 217
             D V ER   A      R      SF Q        +   VL A    +     + +L+
Sbjct: 219 -GDVVVERRPPAVGEGPARRVPSPGSFLQATQAGEAILTALVLEAMDEGKAKVRRVGDLF 277

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG+G F+L LA     V A +    ++ A      A         R++++         R
Sbjct: 278 CGSGPFALTLAAGAREVHAADGEAAAITALTRAYRA----GAGYARITAE--------AR 325

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL- 335
           +  R   +         +  DPPR+G +     + +   P ++ ++C+P +  RD + L 
Sbjct: 326 DLFRRPLLGPELDALDAVVFDPPRAGAEAQVRRIAESKVPLVVGVACDPGTFARDAATLI 385

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  + +ER+   DQF ++ H+E   +  +
Sbjct: 386 AGGYRLERVTPVDQFAWSAHVELVGVFRK 414


>gi|146339198|ref|YP_001204246.1| putative RNA methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146192004|emb|CAL76009.1| putative RNA methyltransferase [Bradyrhizobium sp. ORS278]
          Length = 411

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 80/364 (21%), Positives = 137/364 (37%), Gaps = 39/364 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHY--RMRAEFHIW-HDGDDLYHIMF 63
            + Y Q    K + + + + A    + ++      H   R RA FH      D L     
Sbjct: 81  PEPYRQ---WKRNIVVETLRA-AKVDCEVAPLIDAHGAGRRRATFHARMGTHDILRVGFS 136

Query: 64  DQQTKERMRIDYFMPGSLLIN-ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
              + E + ID        ++ AL         L+P  +    Q    T+ S+   V + 
Sbjct: 137 AANSHEIVPIDRCPILDPALDGALEAAWALAEALKPTGKPLDIQ---ATATSNGIDVDIR 193

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
               L             +L A K+++  +      ++ L R+     +  A  TL    
Sbjct: 194 GSGPLPP-----PRIAALSLVAEKHRLARLT--RHGELVLMRNPPVMTMGTAQVTL---- 242

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              SF Q         L  ++    G    + +L+CG G F+L LA    RV+A++    
Sbjct: 243 PPGSFLQA-TAQGEETLAQLVLDRVGKAKQVADLFCGVGPFALRLASR-GRVIAMDTDAG 300

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           S+ A +         ++K ++  +++     RR      L+DID        +  DPPR 
Sbjct: 301 SIAALQKAA---GTPSLKPIKAEARDL---FRRPLMPPELRDIDA-------VVFDPPRQ 347

Query: 303 GLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G       +     P I+ +SCN  +  RD+ +L    + +E +   DQF +T H+E   
Sbjct: 348 GAQAQAKQLAASKVPVIVAVSCNVTTFARDVRMLIDGGYKLETVVPVDQFRHTPHVELVA 407

Query: 361 LLVR 364
            LVR
Sbjct: 408 RLVR 411


>gi|114685147|ref|XP_001166965.1| PREDICTED: HpaII tiny fragments locus 9C isoform 3 [Pan
           troglodytes]
          Length = 567

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/391 (17%), Positives = 118/391 (30%), Gaps = 85/391 (21%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL  K     Q++                               L+  R  P    
Sbjct: 179 PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQTE 238

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG+D        + K           ++ I     +++         
Sbjct: 239 YRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 298

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDALHA--- 144
                           Q+   TS+  QA+    +H  +L  +   E    L     A   
Sbjct: 299 TPYSAYDPETYTGHWKQLTVRTSRRRQAMAIAYFHPQKLSPEELEELKTSLAQHFTAGPG 358

Query: 145 -RKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                  L       +       + L+    D  +      L +R   ++F Q N     
Sbjct: 359 RASGVTCLYFVEEGQRKTPSQEGLPLEHVAGDRCIHEDLLGLTFRISPHAFFQVNTPAAE 418

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR------------------HFDRVLAV 237
            +   +    +   G  +L++ CG G   L LAR                     RV+ V
Sbjct: 419 VLYTVIQDWAQLDAGSTVLDVCCGTGTIGLALARGPMYSPPWVGRHHAFLFQKVKRVIGV 478

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+   +VE AR N   N ++NV+     +++    +        L              +
Sbjct: 479 ELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPTLVSRLASQHL-----------VAIL 527

Query: 298 DPPRSGLDDATVGMVQAYP---HILYISCNP 325
           DPPR+GL    +  ++       +LY+SCNP
Sbjct: 528 DPPRAGLHSKVILAIRRAKNLRRLLYVSCNP 558


>gi|319408217|emb|CBI81870.1| putative enzyme [Bartonella schoenbuchensis R1]
          Length = 414

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 133/355 (37%), Gaps = 30/355 (8%)

Query: 16  EKVDRLRQMMLAFQVPNLQIFRSEPIHY-RMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            K   +   +   +            HY R R                    + + + I+
Sbjct: 84  WKRQLVVDALKKHRFDVAVSPLVTCAHYSRRRIILTASMTKQGHIVGFNRHLSHDVVAIE 143

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
                   I + + ++     L     AK F +  +T   +   V L    + D+  R+ 
Sbjct: 144 ECPVTRSQIISKLNDIREICALLG-NHAKRFHV-TVTFVDNGFDVALRGCIVRDELIRQN 201

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
              +  AL     ++ + G     ++ +++    E+  +    +        F Q  +  
Sbjct: 202 M--IHAALVRGITRLSIEG-----EVLVEQ----EKPLIHFGDVCVELPSGGFLQATSE- 249

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              ++  ++          ++L+ G G F+L +A+  + V AVE  + ++    +     
Sbjct: 250 AEDIISHIILTHFKKAKSAVDLFSGAGTFTLRMAKTMN-VHAVENDETALANLEHAARF- 307

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
               +K V    ++  +     +E  R          F ++  DPPR+G  +    + + 
Sbjct: 308 -AFGLKTVTCEKRDLFRRPLSAKELER----------FDSVVFDPPRAGAKEQVCELAKT 356

Query: 315 -YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
             P ++ +SCNP +  RDLSIL +  +T+E++   DQF ++ H+E   +L ++ +
Sbjct: 357 TIPRVVAVSCNPVTFARDLSILVAGGYTVEKVIPIDQFLWSPHVEVVAILSKRKT 411


>gi|314966734|gb|EFT10833.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA
           [Propionibacterium acnes HL082PA2]
 gi|327327560|gb|EGE69336.1| putative RNA methyltransferase [Propionibacterium acnes HL103PA1]
          Length = 393

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 24/201 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +T       ++     F Q + G    + + V+   K  QGD  L+LYCG G F+ +L
Sbjct: 212 ETMTAHVGQRRWKVGAGGFWQMHPGAAEALADAVIGGLKPQQGDEALDLYCGVGLFAGLL 271

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RV  VE+++ +V  AR N     V   +      +     M              
Sbjct: 272 ADRGVRVRGVEVSRQAVALARRN-----VPGGRFTAGRVERVLPRM-------------- 312

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILS-TTHTIERL 344
            + +   + +DPPR G     V  V   +   I +++C+P +L RDL +     +    +
Sbjct: 313 -APKANIVVLDPPRRGARKTVVQAVARTSPRAIAHVACDPAALARDLHLFDVNGYLPRSI 371

Query: 345 ALFDQFPYTRHMECGVLLVRK 365
             FD FP T H+E   +L  K
Sbjct: 372 RAFDVFPMTHHVEAVAILEPK 392


>gi|304393473|ref|ZP_07375401.1| RNA methyltransferase [Ahrensia sp. R2A130]
 gi|303294480|gb|EFL88852.1| RNA methyltransferase [Ahrensia sp. R2A130]
          Length = 417

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 128/368 (34%), Gaps = 36/368 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
             T        Q A K   + +       +V   +   + P + R R     W +G  + 
Sbjct: 70  GCTFQHMSLTAQRAWKRSEVERAFAKAGLKVEVAETIGNAP-NSRRRVTMTAWREGGAIK 128

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
               +Q + +R+ I         + A +  + + +    +L+       ++T+  +   V
Sbjct: 129 LGYSEQGSTDRVPIQSCPILVPELGAALGPLQSVLAT--VLQGNAEARAHMTAADNGIDV 186

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQ-LIGRANKTKICLDRDYVDERLTVAGRTL 178
            +      ++      +R        +  +   +  A +  I             + +  
Sbjct: 187 GIETSGEANEDTMAAMVRAFARSPFLRISVDGEVAAAREHPII------------SFQGA 234

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  +F Q        ML+ + +        + +L+ G G F+  L+ +  +V AVE
Sbjct: 235 TVELPTGAFLQAVKSAEDAMLD-LASRHLKKSKRVADLFSGLGTFTFPLSAN-SKVHAVE 292

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               +V+A  Y    +    V                 R+   L  +      +  + +D
Sbjct: 293 SDVAAVKALHY-AQRDGGKAVT-------------SEIRDLIELPLMPKELEAYDGVCLD 338

Query: 299 PPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           PPR+G  +    + +     I YISCNP +  RD+++L     +I  +   DQF ++ H+
Sbjct: 339 PPRAGAAEQIAEIARTDIRRIAYISCNPVTQARDVAVLVKAGWSIASITPVDQFVFSPHI 398

Query: 357 ECGVLLVR 364
           E   LL +
Sbjct: 399 ESVALLEK 406


>gi|99082734|ref|YP_614888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruegeria sp. TM1040]
 gi|99039014|gb|ABF65626.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruegeria sp. TM1040]
          Length = 414

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 129/353 (36%), Gaps = 28/353 (7%)

Query: 15  AEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             KV+ +R  +L+ ++  + +  ++ P H R RA   +             + +     I
Sbjct: 84  QWKVEIVRNALLSRKLETDFRPIQTSPTHSRRRATLTVKRTKKGAMAGFHGRASDVITAI 143

Query: 74  DYF-MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
               +    LI AL   M   + L    R     +   TSQ+    V +   + LD   R
Sbjct: 144 PDCHLLAPELIAALP--MAEDLALIGASRKAPLSVTITTSQAGLD-VLVKNGKPLDGPLR 200

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
               +  D     +        A           +++  T A           +F Q   
Sbjct: 201 IQLAQAVDRHSLARLTWDDELLA-----------MEQSPTQAFGGANVCPPPGAFLQATP 249

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                ++   +    G    +++L+ G G FSL LA+    V AVE  +  ++A    + 
Sbjct: 250 EGESALVA-AVREGVGDARRIVDLFAGAGTFSLPLAQTA-EVHAVEGEREMMQALE--LG 305

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +K V   +++  +      +  +   +      +  + +DPPR+G +     + 
Sbjct: 306 WRKAQGLKKVTTETRDLFRNPLLVEDLRQFGKV------YDAVVIDPPRAGAEAQIAQLA 359

Query: 313 QAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           +A  P I Y+SCNP +  RD  +L +  + +  + + DQF ++ H E      
Sbjct: 360 KAKLPLISYVSCNPVTFARDAEVLVAAGYKLNWVQVVDQFRWSSHTELAASFS 412


>gi|163867876|ref|YP_001609080.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017527|emb|CAK01085.1| RNA methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 417

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 133/354 (37%), Gaps = 36/354 (10%)

Query: 16  EKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K   +   +  + + ++   +   +P   R R                    + E + +
Sbjct: 84  WKRQLVVDALKKYGINSVVAPLIECKPYS-RRRVTLTASVTPQGQKVGFNRYLSHEIIAL 142

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +              E+++ +R    L A      +L+S   +  VT+   +   D    
Sbjct: 143 EECPVS-------HPELISQLRNIRELCA------FLSSSVKRFHVTITRVQNGLDVALS 189

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--VAGRTLIYRQIENSFTQPN 191
             I   ++L      I         ++ +D + + ER    +    +        F Q  
Sbjct: 190 DCIIHHESLRQE--MINAALSYGMIRLSVDGEVLIEREKPVIYFGDVRVEFPSGGFLQAT 247

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 M   ++        + L+L+ G G F+L +A+  + V AVE  + ++E    + 
Sbjct: 248 CEAENAM-GNIILTHLKKAKNALDLFSGVGTFALRMAKKMN-VHAVENDEKALEN--LSS 303

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           AA     +K V    ++  +     +E             F+++  DPPR+G +     +
Sbjct: 304 AARFSTGLKTVTCEKRDLFRYPLSVKELE----------CFESVVFDPPRAGAEGQVREL 353

Query: 312 VQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
            +A    ++ ISCNP +  RDLS+L +  +TIE++   DQF ++ H+E   +L 
Sbjct: 354 AKATVSRVVAISCNPATFARDLSLLVAGGYTIEKITPIDQFLWSSHVEVVAVLS 407


>gi|209886014|ref|YP_002289871.1| hypothetical RNA methyltransferase [Oligotropha carboxidovorans
           OM5]
 gi|209874210|gb|ACI94006.1| hypothetical RNA methyltransferase [Oligotropha carboxidovorans
           OM5]
          Length = 413

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/324 (22%), Positives = 117/324 (36%), Gaps = 31/324 (9%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRA 102
           R RA FH       L          E + ID        +  AL         L+P+ + 
Sbjct: 118 RRRATFHARQGSGGLRVGFAAAGRHEIVAIDRCPILDPAMEAALAAANAIAQLLKPVGKP 177

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              Q+   ++  +   + +     LD         +   L     Q  L       ++ L
Sbjct: 178 LDIQV---SATENGLDIDVRGSGPLD-------TAILTKLSELADQHCLARLTRHGELVL 227

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            R     R+  AG TL       SF QP       +   V+   KG +  + +L+CG G 
Sbjct: 228 LRAPPTIRVGRAGVTL----PPASFMQPTQAGEETLAALVIQRCKGAK-RIADLFCGFGP 282

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+L LA  F RV A +    +++A         +NN        K  T      R+  R 
Sbjct: 283 FALRLAEKF-RVAAFDSDGKAIDA---------LNNAVRATQGLKPLTAV---ARDLFRR 329

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHT 340
             +      F  +  DPPR G +  +  +  +    ++ +SCNP +  RD  IL      
Sbjct: 330 PLVPQELREFDCVVFDPPRQGAEAQSRQLAASRLSRVVAVSCNPATFARDARILTGGGFR 389

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +  ++  DQF +T H+E     +R
Sbjct: 390 LASVSPVDQFRHTAHVELVADFIR 413


>gi|218670873|ref|ZP_03520544.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli
           GR56]
          Length = 406

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 77/354 (21%), Positives = 125/354 (35%), Gaps = 31/354 (8%)

Query: 15  AEKVDRLRQMML-AFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           A K   +   +      P++ +I  + P   R R  F       D+       ++   + 
Sbjct: 80  AFKRQLVVDALKSKGLTPDVGEIVPARP-GERRRVVFAARKTEKDMLIGFNQAESHHIVA 138

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I+     S  I A +  + A         A+ F++  L + S   I      +L D   R
Sbjct: 139 IEECPISSAGIVARLPAIKAIAAALATN-AEPFRVAVLETLSGLDIAADDIKKLSDPQRR 197

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           +    +       +  +         K  +D   V+                  F Q   
Sbjct: 198 KAIETVLGLRGIARVTVNGEILVEPAKPLIDFGGVE-----------VSPPPGGFAQATK 246

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                M E VLA   G    + +L+ G G FSL LAR   RV A  +   +   A  + A
Sbjct: 247 PAEEAMAELVLA-HAGKAKRIADLFAGTGTFSLRLAR-IGRVHA--VEAEATALAALDQA 302

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           A     +K V +  ++  +     +EF            F  +  DPPR+G +     + 
Sbjct: 303 ARKTQGLKPVSVEKRDLFRRPLMTQEFK----------PFDMVVFDPPRAGAEFQCTELA 352

Query: 313 Q-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +     I  +SCNP +L RDL IL    + I  +   DQF +T H+E    L +
Sbjct: 353 RSGVKKIAAVSCNPLTLARDLQILVEGGYRITGVTPIDQFLWTSHVEVVATLEK 406


>gi|329946857|ref|ZP_08294269.1| TRAM domain protein [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328526668|gb|EGF53681.1| TRAM domain protein [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 462

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 71/333 (21%), Positives = 127/333 (38%), Gaps = 55/333 (16%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R    +  DG+     M   ++   + +       L I  + +   +  R     R  
Sbjct: 172 RTRVSLTVTDDGEP---GMHAFRSGTVLPLHRLPLAVLAITEIGLLERSRWRAH--YRPG 226

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           + +I+ +     + +V L+  RLL    R    R          ++Q I  A+       
Sbjct: 227 M-RIEAIAPSGGEPVV-LLDDRLLTAQARSTGRR----------RVQEIVDASA------ 268

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ------GDLLELY 217
                    +    L Y      F Q +      ++E V+ A  G          +LELY
Sbjct: 269 ---------LGLGELTYSVHAGGFWQVHVDAPRVLVERVVRAALGENLERAAGSRVLELY 319

Query: 218 CGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
            G G F+L LA       +VL++E ++ +V  AR  +  +        R+++   +    
Sbjct: 320 SGAGLFTLPLAALVGSGGQVLSLEGSEQAVRDARRTLHEH-----PGARLAAGRVSARSV 374

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
           RE   +        + R   + +DPPR G     +  V A     I+ ++C+P +L RDL
Sbjct: 375 RELAGS------FSAGRPDVVVLDPPRQGAGREVIEAVAALGAERIVLVACDPAALARDL 428

Query: 333 S-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             +L + + +  ++  D FP+T H E   +L R
Sbjct: 429 GTLLRSGYGLGAMSALDMFPHTHHFETIAVLDR 461


>gi|310817142|ref|YP_003965106.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ketogulonicigenium
           vulgare Y25]
 gi|308755877|gb|ADO43806.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Ketogulonicigenium
           vulgare Y25]
          Length = 399

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 120/355 (33%), Gaps = 34/355 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFR-SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             K + + + +   Q+        + P   R RA+F    +          + +   + +
Sbjct: 73  DWKAEIVARALAGQQLSGEIAGTLTSPARSRRRAKFTGRRNKSGGVIGFKARGSDMLVEV 132

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    I ALM  +     L    +A+   +  +T  +  A + +   R L      
Sbjct: 133 PDCQLIVPEIAALMPALAEVANLAASRKAEAGLL--VTQSTAGADLQVESERTLTPELVG 190

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ--IENSFTQPN 191
              R+ +              A   +I   ++    R                 SF Q  
Sbjct: 191 DLARIAER-------------AGFARITWGQESAVLRAPPVQNMGAAPVVPPPGSFLQAT 237

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A     +L  V  A  G    +++L+ G G FSL LA     V AVE   P +EA +   
Sbjct: 238 AEGENTLLNKVREAI-GDASRVVDLFAGCGTFSLPLASK-TEVHAVESVAPMIEALQRGW 295

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            A        +R  + E     R       LKD       F    +DPPR+G +     +
Sbjct: 296 RAAG-----GLRKLTTEVRDLFRNPLLPIDLKD-------FDAAIIDPPRAGAEAQVRQL 343

Query: 312 VQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             A  P I  +SCNP +  RD  IL      +  + + DQF ++ H+E      R
Sbjct: 344 AAASVPVIAMVSCNPVTFARDARILVEAGFQMGPIWVVDQFRWSTHVELVTRFTR 398


>gi|240850084|ref|YP_002971477.1| RNA methyltransferase [Bartonella grahamii as4aup]
 gi|240267207|gb|ACS50795.1| RNA methyltransferase [Bartonella grahamii as4aup]
          Length = 417

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 133/367 (36%), Gaps = 34/367 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLY 59
             TL     +     K   +   +  + + N+   +   +P   R R             
Sbjct: 70  GCTLQHWHMDAYRVWKQQLVVDALKKYGLNNVVAPLIECKPYS-RRRITLTASMTPQGQK 128

Query: 60  HIMFDQQTKERMRIDYFMPG-SLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
                  + E + ++        LI+ L         L    +     I  + +  D A+
Sbjct: 129 VGFNRYLSHEIVALEECPVSRPELISQLHNIRELCAFLSSSAKRFHVTITRVENGLDVAL 188

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
              I H             LR  + +      +I  +   ++ ++R    E+  +    +
Sbjct: 189 SGCIVH----------HESLRQKMISAALSYGIIRLSVDGEVLVER----EKPEIYFGDV 234

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                   F Q       +++  ++        + ++L+ G G F+L +A+  + V AVE
Sbjct: 235 RVEFPSGGFLQA-TCEAENIMGNIILTHLKKAKNAVDLFSGIGTFTLRIAKKMN-VHAVE 292

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
             + ++     N AA     +K V    ++  +     +E             F+++  D
Sbjct: 293 NNEDALRN--LNTAARFATGLKTVTCEKRDLFRHPLSVKELE----------GFESVVFD 340

Query: 299 PPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           PPR+G +     + +     ++ ISCNP +  RDLS+L +  +T+E++   DQF ++ H+
Sbjct: 341 PPRAGAEQQVRELAKTTVSRVVAISCNPTTFARDLSLLVAGGYTVEKIIPIDQFLWSPHV 400

Query: 357 ECGVLLV 363
           E   +L 
Sbjct: 401 EIVAVLS 407


>gi|329121766|ref|ZP_08250383.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
 gi|327468236|gb|EGF13722.1| 23S rRNA (uracil-5-)-methyltransferase [Dialister micraerophilus
           DSM 19965]
          Length = 133

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 15/145 (10%)

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           + LA+    V+ +EI K ++E A+ N   N + NV+       ++            L +
Sbjct: 1   MYLAQKAKHVIGIEIIKDAIENAKENAKRNKIKNVEFHAADVAKY------------LPE 48

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTI 341
           +     + + + +DP R+G D+  +  +       I+Y+SCN  +  RD+  LS   + +
Sbjct: 49  LAKKGIKAEVVVLDPVRAGCDEKVIEAIGKINPERIVYVSCNVATQARDIERLSKKGYKL 108

Query: 342 ERLALFDQFPYTRHMECGVLLVRKP 366
            ++   D FP T H+E   LL  + 
Sbjct: 109 IKIQPIDMFPQTTHVETVALLELRK 133


>gi|16125575|ref|NP_420139.1| RNA methyltransferase [Caulobacter crescentus CB15]
 gi|221234324|ref|YP_002516760.1| tRNA (uracil-5-)-methyltransferase [Caulobacter crescentus NA1000]
 gi|50401664|sp|Q9A8M7|Y1326_CAUCR RecName: Full=Uncharacterized RNA methyltransferase CC_1326
 gi|13422671|gb|AAK23307.1| RNA methyltransferase, TrmA family [Caulobacter crescentus CB15]
 gi|220963496|gb|ACL94852.1| tRNA (uracil-5-)-methyltransferase [Caulobacter crescentus NA1000]
          Length = 415

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 128/356 (35%), Gaps = 29/356 (8%)

Query: 15  AEKVDRLR-QM-MLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQQTKER 70
           A K +++R Q+ M   +   L  F + P   R R   H      G        ++++   
Sbjct: 83  AWKAEQVRLQLSMEGLETEILPTFAAPPAS-RRRVALHARKGGKGQGARLGFKERRSWNL 141

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + I+           +          EP L           + +   +   I        
Sbjct: 142 VSIEECPVTDPR--LVAALPALARLAEPFLEHPKSAPTLHVTLTATGLDIDITGVERKSG 199

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                 R+R A+ A +     +  A +T           +L  A   L       SF Q 
Sbjct: 200 GLSADARMRAAMAAGEGDFARVTLAGET--IYGARQPLVKLGQAVVAL----PPGSFLQA 253

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                  M+E  +A  +G    + +LYCG G F+  LA    +V A E++ P++ A +  
Sbjct: 254 VPAAEKAMVELAVAEAQGAS-RVADLYCGVGTFTFPLAE-VAQVYAAEMSAPAITALK-- 309

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            A      +K +   +++            R   +     +   + +DPPR+G  + TV 
Sbjct: 310 AAIGGAPGLKPITAEARDLV----------RRPVLSTELAKTDVVVIDPPRAGAAEQTVE 359

Query: 311 MVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           + +     +L +SCNP +  +D  +L      + R+   DQF ++ H+E   +  R
Sbjct: 360 IAKSKVAKVLGVSCNPQTFAKDARVLVDAGFKLVRVTPVDQFVWSPHIELVGVFTR 415


>gi|312139448|ref|YP_004006784.1| (uracil-5-)-methyltransferase [Rhodococcus equi 103S]
 gi|311888787|emb|CBH48099.1| putative (uracil-5-)-methyltransferase [Rhodococcus equi 103S]
          Length = 422

 Score =  149 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 124/361 (34%), Gaps = 52/361 (14%)

Query: 17  KVDRLRQMMLAFQVPNLQIFRSE-P-----IHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           K   + + +         +     P       +R R    +   G   +H          
Sbjct: 101 KAFVVAEQLRRIAGVEQDVAVEPLPGTGNGTGWRSRVRLAVDASGRPGFHRY------RS 154

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + I+ F+        + +   A +           Q+  L +  D+ +V       +  A
Sbjct: 155 LEIETFLAC----PQIDLSAYAGLSERSWQPGGEVQV-VLDADGDRHVV------EIAPA 203

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                 R          +          ++ +      ER+      L        F Q 
Sbjct: 204 KVSRTGRRSPGRRGATARRAASSGTRAERVVIGSGRPVERVGGREWHL----AATGFWQA 259

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEA 246
           + G      E V   T+   GD + +LY G G F+  LA       RV +VE +K +V  
Sbjct: 260 HRGAAETYAEVVGEWTQPSAGDNVWDLYGGVGVFAATLADQVGVTGRVDSVEFSKQAVAD 319

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
               +A     ++  VR+ +       R ER  + L            + +DPPR+G   
Sbjct: 320 GGEALA-----DLPQVRLHAA------RVERALHDLP-------TPDVVVLDPPRTGAGR 361

Query: 307 ATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             V  +   A   I++I C+P S  RD+S+  +  + +E++  FD FP T H+E   LL 
Sbjct: 362 EVVDTIVAAAPQRIVHIGCDPASFARDVSLFRAGGYRLEQVRAFDAFPLTHHVESLALLT 421

Query: 364 R 364
           R
Sbjct: 422 R 422


>gi|329926113|ref|ZP_08280704.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
           HGF5]
 gi|328939387|gb|EGG35741.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
           HGF5]
          Length = 414

 Score =  149 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 86/236 (36%), Gaps = 22/236 (9%)

Query: 30  VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL-------- 81
           +    +  SEP  YR +++  I      L    + + +   + ++  +            
Sbjct: 184 LVRPTLGMSEPWRYRNKSQVPIGVTEGGLVGGFYARGSHRIVDMETCLIQHEQNDEVVSR 243

Query: 82  ---LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL 138
              +   L I        + LLR  + +I + T +    +VT        + W      +
Sbjct: 244 VKAIGRKLGITAYNEETGQGLLRHVVVKIGFATREMMIVLVTNGERIPRLNEW---VAAI 300

Query: 139 RDALHARKYQIQLIGRANKTKICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGI 194
           R+ L A     Q +    KT +         +  E +      + +     SF Q N   
Sbjct: 301 REELPAVVSVCQNVNI-RKTNVIFGDVTRVLWGREVIHDYIGDVKFAISARSFYQVNPAQ 359

Query: 195 NVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
              +    +    G+ G+  +++ YCG G  SL LA+H  +V  VEI K ++E AR
Sbjct: 360 TEVLYGKTVE-YAGLTGEETVIDAYCGIGTISLFLAQHAKKVYGVEIVKEAIEDAR 414


>gi|306818800|ref|ZP_07452522.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304648486|gb|EFM45789.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 414

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 132/379 (34%), Gaps = 78/379 (20%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNL--QIFRSEP-IHY--------RMRAEFHIWHDGDDL 58
           Y  QL  K + L + +       L  ++ R  P            R R  F +       
Sbjct: 90  YPAQLRWKREVLAEALRRNGSDALVAEVSRVAPDWSVASLGASPGRSRVSFAL---DSAG 146

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
           + +M +  T  + R   F             ++A +    L   KL              
Sbjct: 147 FPVMSEAGTHRQHRFSSFP-----------LLVANLEGLRLFDRKLAF------------ 183

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD------ERLT 172
                             R++    +    +  +G         D D+V       E + 
Sbjct: 184 --------------APGSRVKAVAPSASAPVFAVGSE-----VFDADFVPTTPRVREVVR 224

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH- 230
           V  R   YR   +SF Q +      ++  +LA    I   ++LELY G+G FS+ LA   
Sbjct: 225 VGAREHTYRIFASSFWQTDYRAPAVLVGELLAGVGDISDFEVLELYSGSGLFSVFLAEAV 284

Query: 231 --FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               R+  VE    +V++A YN+       V + R S             F R  D    
Sbjct: 285 GAAGRLTTVEGDALAVKSAGYNLKHAGFVGVSVERASV---------SARFLRGVDFGQR 335

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLA 345
             R   +  DPPRSGL     G +       +  ISC+P S  RDL  L    + ++   
Sbjct: 336 VSRGTLVVADPPRSGLGRDVAGAICGLEPDLVALISCDPVSCARDLEALRRGGYRLQSFR 395

Query: 346 LFDQFPYTRHMECGVLLVR 364
           +FD FPYT+H+E   +L R
Sbjct: 396 VFDLFPYTQHVEVLSVLGR 414


>gi|298706853|emb|CBJ25817.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 714

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 121/374 (32%), Gaps = 69/374 (18%)

Query: 27  AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT-KERMRID-----YFMPGS 80
            F V +  +   EP  YR + EF +    D L    F     +  + I            
Sbjct: 273 PFDV-SPIVPAPEPEGYRNKCEFTLSLSEDGLATAGFRAGRFQAGVPITVESPKDCPQVH 331

Query: 81  LLINALMIEMMATIRLEP-----------LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
             +  L ++M A +R  P           + R  + +      +    +V         +
Sbjct: 332 GDMKKLCVQMDAFMRSSPFPLYDDATKKGVWRLLVARRSAADKEGMAMVVINPTDVKDTE 391

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKIC--LDRDYV-----DER-----------L 171
            W++   RL   L A             TK+     ++Y      DE            L
Sbjct: 392 EWKKEEERLVKELSA------GAQGEEGTKLVSLWVQEYAGLSSPDETSPMRLLWGKERL 445

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARH 230
                 L +    NSF Q N      + + V+     G    +L++ CG G   +  A  
Sbjct: 446 EEELLGLRFTISPNSFFQVNTKGAEALYKVVIENLELGDDAVVLDVCCGAGTIGICAAAA 505

Query: 231 F--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               +V   +I  P++E AR N  AN ++N + V   ++                 +   
Sbjct: 506 GGAKQVYGSDICLPAIEDARRNALANGIDNCEFVCGKAEAVVAGQIANAFKQHKASLGAP 565

Query: 289 SYRFK--------------------TIFVDPPRSGLDDATVGMV---QAYPHILYISCNP 325
           +                           VDPPRSG+    +  +   +A   ++Y+SCNP
Sbjct: 566 AAGAGEEGSTASPAAAPAATGELKFAAIVDPPRSGVHAKCLRSIRGTKAIKRLVYVSCNP 625

Query: 326 D-SLCRDLSILSTT 338
             SL  D +IL T 
Sbjct: 626 TKSLAADATILCTP 639


>gi|213622841|ref|ZP_03375624.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 291

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 108/302 (35%), Gaps = 27/302 (8%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +V ++    S    YR RA   +    D    + F +  + + +
Sbjct: 15  QQRSKSAALARLM-KHEVNDIIAGAS--WGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 71

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 72  NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 129

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 130 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLTFSPRDFIQVN 181

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE  +  VE  R N
Sbjct: 182 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVQALVEKGREN 241

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N ++NV     + +E             +         F  + +DP R+G       
Sbjct: 242 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGATGVMRH 289

Query: 311 MV 312
           ++
Sbjct: 290 II 291


>gi|254475692|ref|ZP_05089078.1| putative RNA methyltransferase [Ruegeria sp. R11]
 gi|214029935|gb|EEB70770.1| putative RNA methyltransferase [Ruegeria sp. R11]
          Length = 435

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 126/358 (35%), Gaps = 38/358 (10%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             KV  ++  + A  +      I  S P   R RA   +             + +    +
Sbjct: 104 DWKVGIVQSALSAQGLTADFRPIHTSPPQS-RRRATLSVRRTKKGAMAGFHGRASDVITQ 162

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLR----AKLFQIDYLTSQSDQAI-VTLIYHRLL 127
           I            L  E++A I +   L     ++   +    + S+  + V +   + L
Sbjct: 163 IPDC-------QLLSPELIAAIPVAEELAMVGASRKAPLSVTVTLSEVGLDVLVANGKPL 215

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D   R    R+ DA    +   +      +      + +    +              +F
Sbjct: 216 DGQLRIDLARIVDAHGLARLSWEDELIGMEQPPT--QPFGPAHVCP---------PPGAF 264

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            Q        +    +    G    +++L+ G G FSL LAR+   V AVE  +P +  A
Sbjct: 265 LQATRDGEAAL-LAAVEEAVGRAKRVVDLFAGCGTFSLPLARNA-EVHAVEGERPML--A 320

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             ++       +K V   +++  +      + N           +    +DPPR+G +  
Sbjct: 321 ALDLGWRQAKGLKKVTTETRDLFRNPLLPVDLNPF------GEEYDAAVIDPPRAGAEAQ 374

Query: 308 TVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           +V +V A  P I Y+SCNP +  RD  IL    + +  + + DQF ++ H E      
Sbjct: 375 SVQLVAAKTPSIAYVSCNPVTFARDAKILVDGGYQLNWVQVVDQFRWSSHTELAASFT 432


>gi|293363614|ref|ZP_06610370.1| TRAM domain protein [Mycoplasma alligatoris A21JP2]
 gi|292552963|gb|EFF41717.1| TRAM domain protein [Mycoplasma alligatoris A21JP2]
          Length = 464

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 161/412 (39%), Gaps = 73/412 (17%)

Query: 1   MSGTLLI--DQYEQQLAEKVDRLRQ----------MMLAFQVP--NLQIFR--------- 37
           +S +L +   +Y +Q   K + L++          +    ++P  N++IF+         
Sbjct: 79  ISNSLPLASLKYSEQFKFKYELLKKWISWKMPHIPIFFEQKLPLNNIKIFKNIDSISIEP 138

Query: 38  ---------SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI 88
                     E +  R + +    ++   L   M   +T + ++   ++ GS  +N ++ 
Sbjct: 139 TSNDCDLLLDEQLAKRNKLKIPFIYERGKLITGMHIFKTNKLIKSQNYILGSDQMNRIIQ 198

Query: 89  ----EMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA 144
               ++ + +  + + +     I   +++  Q I T+     L+   +    +L + ++ 
Sbjct: 199 NTVFKINSYLSKDLIKKFLEMTIRENSAKEYQIIFTM-----LEPLNKSDLDQLHNNIYF 253

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL-----IYRQIENSFTQPNAGINVHML 199
               +Q+  +A         +Y  E L +    +      ++    SF Q N   N   +
Sbjct: 254 ESLVLQVAFKAE--------NYFYEFLNLKDFYMELNNKKFKVNYYSFFQTNTW-NFKRI 304

Query: 200 EWVLAATKGI--QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              + +   +    ++LELYCG G+  +        ++ +EI K ++E AR N   N  N
Sbjct: 305 SEDIKSILKLFNVDNVLELYCGVGSLGISTGLEKLNIIGIEIVKQAIENARENAKLNEFN 364

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAY 315
           N         +  +                 +   K + +DPPRSGLD   +  +     
Sbjct: 365 NATYYCGDVYKVIKEKN-------------ITLNNKVVLLDPPRSGLDKELIDFLVNNNA 411

Query: 316 PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKP 366
             I+Y+SC+  +L RD++I  +  + I  +  +D F  T H+E    + +K 
Sbjct: 412 DKIIYVSCDLGTLIRDITIFDSFGYDINFVKGYDVFKNTSHIETLSFITKKN 463


>gi|256829391|ref|YP_003158119.1| deoxyribonuclease/rho motif-related TRAM [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578567|gb|ACU89703.1| deoxyribonuclease/rho motif-related TRAM [Desulfomicrobium
           baculatum DSM 4028]
          Length = 389

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 128/363 (35%), Gaps = 80/363 (22%)

Query: 13  QLAEKVDRLRQMM-------LAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYHIMFD 64
           QL  K D LR  +          ++P L++  S     YR R + H+      L H M  
Sbjct: 95  QL--KADILRDALPRALGRDHGLRIPELRVVPSPQGWRYRQRGQIHV---ASGLPHAM-- 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
                                                            +   +V L   
Sbjct: 148 -----------------------------------------------GHASNDLVPLTDC 160

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
            LL          L   L   ++ I      +  +   +RD V    +     L  +   
Sbjct: 161 HLLAAPLASAMPALAKGLPDGRFTI--AASPDTGQTATERDNVLLPFSFPDFGLTLQLPP 218

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           ++F Q N  +N H++   + A  G +  + +L+ G GNF+L LA     VLAVE + P+V
Sbjct: 219 STFFQANWALNQHLVRSTVDALHGFE-RIADLFSGAGNFALPLASRGKSVLAVEGSAPAV 277

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +    N           + + S  F  A   +    ++    +  +  +   +DPPR+G 
Sbjct: 278 DTGMRNA--------DRLALKSVTFRDANLAKPAAWKM----VEDFAPRAAILDPPRTGA 325

Query: 305 DDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVL 361
                 ++       + ++SC+  +  RD   +L+   +I  L LFD FP T HME  ++
Sbjct: 326 KGIGRTLLGMPGLERLAWVSCDVVNTVRDAKPLLAAGWSISSLTLFDMFPGTWHMEVLMI 385

Query: 362 LVR 364
           L R
Sbjct: 386 LDR 388


>gi|254459850|ref|ZP_05073266.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacterales bacterium
           HTCC2083]
 gi|206676439|gb|EDZ40926.1| 23S rRNA (uracil-5-)-methyltransferase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 408

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 130/355 (36%), Gaps = 35/355 (9%)

Query: 15  AEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             K   ++  + A  +   L+   + P+  R RA   +             + +   + +
Sbjct: 79  EYKQQIVKSALDAHGIETELRPIVTSPVQSRRRATLAVRRTKKGALWGFHARGSDTVVAV 138

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                    +  +   +M  +      R     ++   S+     V +   + LD   RE
Sbjct: 139 PECQLVVPELLGVN-ALMDDLARIGGSRKGEMAVNVTLSEVGLD-VFVTGGKPLD---RE 193

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ--IENSFTQPN 191
             + L   + A K            ++  D + +  R          R      +F Q  
Sbjct: 194 LTLGLSGVVEAHKLA----------RLTWDDEVIGMRNLPYQNFGAARVAPPPGAFLQAT 243

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +   VL A  G +G  ++L+ G+G F+L LA H+  ++A+E  KP + A     
Sbjct: 244 VHGQDALTAAVLDAVSGEKG--VDLFAGSGTFTLPLAEHY-EMIALEGEKPMIAALDR-- 298

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                  +K V   +++     RR    + L  +D          +DPPR+G +     +
Sbjct: 299 GWREAKGLKKVDAIARDL---FRRPFLPDELAKLDFA-------VLDPPRAGAEAQVAEL 348

Query: 312 VQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            ++    I Y+SCNP +  RD ++L     T+E   + DQF ++ H+E      R
Sbjct: 349 AKSEIAQIAYVSCNPVTFARDANVLIKAGFTLEWAQVVDQFRWSSHVELAAKFAR 403


>gi|87199804|ref|YP_497061.1| (Uracil-5)-methyltransferase [Novosphingobium aromaticivorans DSM
           12444]
 gi|87135485|gb|ABD26227.1| 23S rRNA m(5)U-1939 methyltransferase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 401

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 113/329 (34%), Gaps = 27/329 (8%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
           S P   R RA  H    G  +     +Q + + + +      ++ + AL+  + A +   
Sbjct: 97  SPPRT-RRRATLHAQAIGKRVVIGFREQGSHKIVDMRECHVLAIELFALVGPLRALLEGW 155

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
              R     I+   S    ++      + L          L D           +     
Sbjct: 156 ND-RKLAVDIELALSDQGASVGL----KGLAAEGLAKTEALLDFARDNGLARLTLDAGYG 210

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
            +   + + V   L      L       +F Q  A     ++        G    + +L+
Sbjct: 211 PEGVWEPEPVTVTLGGTPVAL----PPGAFLQATADGEAALVGAAREWLSG-AATVADLF 265

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G F+  LA    +VLAVE A+      +     N     + V    ++  +   R  
Sbjct: 266 SGLGTFAFALAGPATKVLAVEAAREPYMVCQAAARMNG----RPVHALHRDLFRNPLRVE 321

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL- 335
           E +R          F  + +DPPR+G  +    +       ++Y+SCNP S  RD   L 
Sbjct: 322 ELDR----------FAAVLIDPPRAGAQEQVEQIAASKVARVVYVSCNPASWARDAVRLI 371

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  + +  +    QF ++ H+E   L +R
Sbjct: 372 AGGYRLAEVRPVGQFRWSTHVELASLFIR 400


>gi|167519923|ref|XP_001744301.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777387|gb|EDQ91004.1| predicted protein [Monosiga brevicollis MX1]
          Length = 211

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 79/203 (38%), Gaps = 25/203 (12%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             L +R   ++F Q N      +   V   A    +  LL++  G G    + A    RV
Sbjct: 6   NGLTFRVSPDAFFQVNIPAAEELYRLVGDWAGLSRECALLDICSGTGTIGQLYANRVRRV 65

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +  E+ + +VE A++N   N + N       +++    +    +  R+            
Sbjct: 66  IGFELVESAVEDAKHNAELNGLTNCSYFAGRAEKTMPEVAARVQEERV-----------V 114

Query: 295 IFVDPPRSGLDDATVGMVQAYP----HILYISCNPDSLCRDLSILST---------THTI 341
             VDPPR GL +     +         ++Y++CN  +   ++  L              +
Sbjct: 115 GIVDPPRCGLRNEFARALMHGSDLILRLVYVACNFKASHTNIVDLCRKTSKRWQGDPFQL 174

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
            R+   D FP+T HME  +LL+R
Sbjct: 175 VRVRAVDLFPHTPHMEVVLLLLR 197


>gi|227496018|ref|ZP_03926329.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
 gi|226834411|gb|EEH66794.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
          Length = 323

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 29/223 (13%)

Query: 163 DRDYVDERL---TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA--------------- 204
            R  VDE +    +    L Y    + F Q +      +++ V+                
Sbjct: 108 GRKRVDEVVDATGLRLGELRYCVHADGFWQVHRDAPGVLVDRVVRGALTGTLEGSSSRPG 167

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A +     +LELY G G F+L LA     V ++E ++ +V  AR N+ A          +
Sbjct: 168 AVRAEGLKVLELYSGAGLFTLPLASLGGEVRSLEGSEQAVRDARRNLHA-----FPGAHL 222

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYIS 322
            +   T A   E      +  D  +     + +DPPR G   A V  V       ++ ++
Sbjct: 223 FAGRVTPASVAELGRGFGEAGDQAA---DVVVLDPPRKGAGRAVVEAVADLGPRRVVLVA 279

Query: 323 CNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           C+P +  RDL ++L+  +++  +   D FP+T H E  ++L R
Sbjct: 280 CDPAAAARDLGALLARGYSLASMCALDMFPHTHHFETLIVLDR 322


>gi|256825396|ref|YP_003149356.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Kytococcus sedentarius DSM 20547]
 gi|256688789|gb|ACV06591.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Kytococcus sedentarius DSM 20547]
          Length = 401

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 128/370 (34%), Gaps = 73/370 (19%)

Query: 11  EQQLAEKVDRLRQMML-------AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           E QL  K   L   +          ++  L+      + +R R EF +  DG      + 
Sbjct: 86  EAQLELKQQVLTDQLRRLAGYEGPVEMRALETQGPAGLRWRTRVEFTLGADGVP---GLR 142

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
             ++ E + +D  +  +  +       +    L     A +  ID +      A+V  + 
Sbjct: 143 RHRSHELVPVDDCLIATEAV-------VGAAGLGRPRGAGVTGIDVVAPAVGDAVVVELG 195

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE-RLTVAGRTLIYRQ 182
           HR                                 ++      V E  ++  G  L    
Sbjct: 196 HR--------------------------------GRVLGSEPVVQEQTVSPEGEPLAVHL 223

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVE 238
               F Q +       ++ VLA      G+ + +L+ G+G F++ LA        VLAVE
Sbjct: 224 GARGFWQAHPAAVPTYVQHVLAELDPRPGERVWDLFSGSGAFTVPLALAVGATGEVLAVE 283

Query: 239 IAKPSVEAARYNIAANHVNNV-KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
            ++P+V+A    +  +  + V  +V     E                          + +
Sbjct: 284 GSEPAVDACAAALEEHAPHTVADLVVGDVAETLARWEG---------------GTDLVVL 328

Query: 298 DPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354
           DPPR+G   A V  V A     I Y++C+P +L RDL         +ER+  FD F  T 
Sbjct: 329 DPPRTGAGPAVVEAVAASGASRIAYVACDPAALGRDLGHARQAGLEVERVVGFDAFGTTH 388

Query: 355 HMECGVLLVR 364
           H+E    L R
Sbjct: 389 HLEAIATLRR 398


>gi|119717125|ref|YP_924090.1| deoxyribonuclease [Nocardioides sp. JS614]
 gi|119537786|gb|ABL82403.1| 23S rRNA m(5)U-1939 methyltransferase [Nocardioides sp. JS614]
          Length = 413

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 20/205 (9%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           +   G   ++    + F Q + G    ++E VL   +  +G+  L+LY G G F+  LA 
Sbjct: 220 VPRHGGEHVFAVEADGFWQVHPGAPRILVETVLDLLQPRRGETALDLYSGVGLFARYLAE 279

Query: 230 HFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
                 RVL+VE  + +   AR N+A   +  V +   +                   + 
Sbjct: 280 AVGPTGRVLSVEGDRTASRHARANLA--GLEGVDVECGAVDRVLAD-----------PLP 326

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIER 343
                   + +DPPR G     V  V  ++   + Y++C+P +L RD++      + +  
Sbjct: 327 PAYSSVDLVVLDPPREGARALVVEQVVERSPRAVAYVACDPAALARDVATFQKFGYHLRS 386

Query: 344 LALFDQFPYTRHMECGVLLVRKPSG 368
           L   D FP T H+E    LV+  SG
Sbjct: 387 LRALDMFPMTSHVEVVAQLVKSGSG 411


>gi|75674829|ref|YP_317250.1| putative RNA methyltransferase [Nitrobacter winogradskyi Nb-255]
 gi|74419699|gb|ABA03898.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrobacter winogradskyi
           Nb-255]
          Length = 422

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/325 (21%), Positives = 121/325 (37%), Gaps = 31/325 (9%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-TIRLEPLLRA 102
           R R   H   DG  L        +   + ID        ++  +       + L+P  + 
Sbjct: 125 RRRITLHARSDGGKLRVGFAAPNSHAIVPIDACPVLDPALHGAIDAARELAVALKPANKP 184

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              Q+   T+  +   V +     L  A      RL +A    +            ++ L
Sbjct: 185 LDIQM---TATRNGLDVDVRSSGQLPPALIATLSRLAEAHRLARLT-------RHGELVL 234

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            R      +  A   L       SF Q         L  ++A   G    +++L+CG G 
Sbjct: 235 MRAAPMIEIGAARLVL----PPGSFLQA-TVAGEEALAALVAVHCGKARRIVDLFCGVGP 289

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+L LA     V A +    +V A +   AA+  + +K ++  S++     RR      L
Sbjct: 290 FALRLAMRA-PVAAFDSNAAAVTALQK--AADTASRLKPIKAESRDL---FRRPLMAQEL 343

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHT 340
           +DID           DPPR G +  +  +     P I+ +SC+  +  RD  IL    ++
Sbjct: 344 RDIDAA-------IFDPPRQGAEAQSKQLAAGRIPVIVAVSCSAATFARDARILVDGGYS 396

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +E +   DQF ++ H+E     VR+
Sbjct: 397 LEAVTPVDQFRHSAHVELVAKFVRR 421


>gi|319405368|emb|CBI78987.1| RNA methyltransferase [Bartonella sp. AR 15-3]
          Length = 417

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 129/358 (36%), Gaps = 32/358 (8%)

Query: 16  EKVDRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            K   +      + +  +     E   H R R         +         Q+ + + I 
Sbjct: 84  WKRQLVVDAFKRYGLDAVISPLIECRNHTRRRVTLTASVTQESCIIGFNRYQSHDIIAIK 143

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI-VTLIYHRLLDDAWRE 133
                   I   + ++     +  LL+    +     +  +    V L    + ++  R+
Sbjct: 144 ECPVTRSEI---LSKLDDIRAICALLKNNAKRFHVTVTVVENGFDVALSGCVVQNEFVRQ 200

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
             IR+  +    +  +Q        ++ +++    E+  +    +        F Q    
Sbjct: 201 KMIRVALSCGITRLSVQ-------GEVLIEQ----EKPVIYFGDICVEFPIGGFLQATFE 249

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M + VL        +  +L+ G G F+L +A+  + V A+E    +          
Sbjct: 250 AETIMGDIVL-THLKKAKNAADLFAGVGTFTLRMAKKMN-VRAIENDGRA---------- 297

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             + N+      +      +  +R+  R          F ++  DPPRSG ++    + +
Sbjct: 298 --LANLDQAARIATGLKTVVCEKRDLFRRPLSAKELECFDSVVFDPPRSGAEEQVNELAK 355

Query: 314 AY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSGW 369
                ++ ISCNP +L RDLS+L +  +TIE++   DQF ++ H+E    L ++ +  
Sbjct: 356 TTVARVVAISCNPITLARDLSLLVAGGYTIEKVVPIDQFLWSPHIEVVATLSKRKTKK 413


>gi|111023795|ref|YP_706767.1| RNA methyltransferase [Rhodococcus jostii RHA1]
 gi|110823325|gb|ABG98609.1| probable RNA methyltransferase [Rhodococcus jostii RHA1]
          Length = 422

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 116/360 (32%), Gaps = 50/360 (13%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           +QLA    RL ++     V  L     +   +R R    +  DG   YH           
Sbjct: 106 EQLA----RLARLQRDVDVEELP-GTGDGTGWRTRVRLAVDPDGRPGYHRHRSSG----- 155

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
                +   L    +       +           QI  L S  ++ +V       +    
Sbjct: 156 -----IVTDLACPQIESAAYDGVSEHDWKPGSEVQI-VLDSAGERHVV------EIAPPK 203

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
                R          +    G     ++ +      ER+      L        F Q +
Sbjct: 204 VSRTGRTSPGRRGAMARRAASGAPRAERVVVGSGRPVERVCDREWAL----AATGFWQAH 259

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAA 247
            G        V        G+   +LY G G F+  LA        V +VE ++ +V   
Sbjct: 260 RGAAETYSAVVAEWAGMSAGETAWDLYGGVGVFAAALAGDAGPSGHVDSVESSRQAVSDG 319

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +   A + +  V+      +     +                   + + +DPPR+G    
Sbjct: 320 K--AALSDLPQVRFHAERVERAIAGLASP---------------PRVVVLDPPRAGAGRD 362

Query: 308 TVGMVQAY--PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            +  V A     ++++ C+P S  RD+ + L+  + ++ L  FD FP T H+EC  LL R
Sbjct: 363 VIDAVAAAGAERVVHVGCDPASFARDIGLYLAQGYHVDELRAFDAFPLTHHVECIALLTR 422


>gi|86136790|ref|ZP_01055368.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           MED193]
 gi|85826114|gb|EAQ46311.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           MED193]
          Length = 415

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 119/356 (33%), Gaps = 36/356 (10%)

Query: 16  EKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            K+  + + + A  V    +   + P   R RA   +             + +     I 
Sbjct: 85  WKLGIVEKALEAQGVETTFRPIHTSPAQSRRRATLAVRRTKKGAMAGFHGRASGVITPIP 144

Query: 75  YFMPGSLLINALMIEMMATIRLEPLL-----RAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
                      L  +++A I L   L       K      LT+      V +   + LD 
Sbjct: 145 DC-------QLLDPDLIAAIPLAEALAMAGASRKTPLSVTLTTSETGLDVMVREGKPLDS 197

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           A R     L       +   +    A +      + +   R+              SF Q
Sbjct: 198 ALRSALAALAGQHGVARLTWEDEQVAMEQPPL--QAFGLARVCP---------PAGSFLQ 246

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
                   +L  VL  TKG +  +++ + G G FSL LA     VLA+E     ++    
Sbjct: 247 ATRDGEAALLAGVLEITKGAK-RIVDFFAGCGTFSLPLAAQA-EVLALEGEPAMIK---- 300

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
               N     + ++  + E     R       LK        ++   +DPPR+G +    
Sbjct: 301 -ALENGWRQARGLKKVTAEVRDLFRNPLLPEDLKPFGAF---YEAAVIDPPRAGAEAQVA 356

Query: 310 GMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
            + +A  P I Y+SCNP +  RD   L    + +  + + DQF ++ H E      
Sbjct: 357 QLAEARMPVIAYVSCNPVTFARDAKALVEAGYGLNWVQVVDQFRWSAHTELVASFS 412


>gi|226227187|ref|YP_002761293.1| hypothetical protein GAU_1781 [Gemmatimonas aurantiaca T-27]
 gi|226090378|dbj|BAH38823.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 468

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 120/373 (32%), Gaps = 41/373 (10%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHI-WHDGDDLYHIMFDQQ 66
           + Q   +   +++ +            I      HYR R    +    G  +  +     
Sbjct: 111 DTQRQARQQMVQETLRRVGRREVALPPITSDLEWHYRGRLTLVLLRRSGGWIGGLHPHDD 170

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPL---------LRAKLFQIDYLTSQSDQA 117
            +    +        L+      + A +    L         L  +L     L + +D  
Sbjct: 171 ARRVFALQQCEIAHPLLVETWHALRAVLTDRSLTMPDADSLRLGLRLDTDATLVADADLK 230

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +  ++            +  +   +   +          +     + D        A   
Sbjct: 231 VTVVLQGGTQWPDRERWSAAVLRRVPQVRAVWWEAEDGTRDAALQEGDA-----PEASEA 285

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLA 236
           L       +F Q NA +   + E V AA        +++ Y G G  +  LAR    V+A
Sbjct: 286 L-------AFAQVNARVADALREHVYAAVTQFAPQRVVDGYSGTGLLTERLARAGREVIA 338

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE            + A      + V   ++     M R      +  +         + 
Sbjct: 339 VEADAMGARRTEERLRAAG----EAVAGRAQVVCDLMERA-----IPGLATDVQAPDVVV 389

Query: 297 VDPPRSGLDDATVGMVQ---AYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
           ++PPR G+D      ++     P   ++Y+SC+P +L RDLS + +   I  +  FD FP
Sbjct: 390 LNPPRRGVDARVTAWLEDEIMRPARGVVYVSCDPATLARDLSRMPS-WDIVSVHCFDMFP 448

Query: 352 YTRHMECGVLLVR 364
            T H+E   +L R
Sbjct: 449 QTAHVETVCVLQR 461


>gi|319898605|ref|YP_004158698.1| enzyme [Bartonella clarridgeiae 73]
 gi|319402569|emb|CBI76114.1| putative enzyme [Bartonella clarridgeiae 73]
          Length = 417

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 128/355 (36%), Gaps = 30/355 (8%)

Query: 16  EKVDRLRQMMLAFQVPNLQIFRSEPIHY-RMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            K   +      + +  +     +  +Y R R                   ++ + + I 
Sbjct: 84  WKRQLVVDAFKKYGLDVVISPLIQCGNYTRRRVTLTASVIQKSHIVGFNRYRSHDIIAIK 143

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
                   I   + ++     +  LLR    +   + +  +      +    + D +  C
Sbjct: 144 ECPVTRSEI---LSKLDNIRVICALLRNNAKRFHVIVTAVENGFDVALMGCGVQDEFV-C 199

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
              +R AL     ++ + G     ++ ++R    E+  +    +        F Q     
Sbjct: 200 QKMIRAALSCGITRLSVEG-----EVLVER----EKPLIHFGDVCVESPIGGFLQATFEA 250

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              M + ++        +  +L+ G G F+L +A+  + V A+E    +           
Sbjct: 251 ETIMGD-IILTHLKKAKNAADLFAGVGTFTLRMAKKMN-VHAIENDGKA----------- 297

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N+      +      +  +R+  R          F +I  +PPRSG +     + + 
Sbjct: 298 -LANLDQAARIATGLKTVVCEKRDLFRRPLSAKELECFDSIVFNPPRSGAEKQVNELAKT 356

Query: 315 YP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
               ++ ISCNP +L RDLSIL +  +TIE++   DQF ++ H+E    L ++ +
Sbjct: 357 TVVRVVAISCNPVTLARDLSILVTGGYTIEKVVPIDQFLWSPHIEIVATLSKRKT 411


>gi|190890623|ref|YP_001977165.1| 23S rRNA (uracil-5-)-methyltransferase [Rhizobium etli CIAT 652]
 gi|190695902|gb|ACE89987.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli CIAT
           652]
          Length = 416

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 124/353 (35%), Gaps = 29/353 (8%)

Query: 15  AEKVDRLRQMML-AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           A K   +   +      P++          R R  F       D+       ++   + I
Sbjct: 90  AFKRQLVVDALKSKGLTPDVGDIVPARPGERRRVVFAARKTEKDMLVGFNQAESHHIVAI 149

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +     S  I A +  + A I       A+ F++  L + S   +      +L D   R+
Sbjct: 150 EECPISSAGIVARLPAIKA-IAASLATNAEPFRVAVLETLSGLDLAIDEIKKLSDPQRRK 208

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
               +       +  +         K  +D   V+                  F Q    
Sbjct: 209 AIETVLGLRGIARVTLNGEILVEPAKPIIDFGGVE-----------VSPPAGGFAQATKP 257

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M E VLA   G    + +L+ G G FS+ LAR   RV A  +   +   A  + AA
Sbjct: 258 AEEAMAELVLA-HVGKAKRIADLFAGAGTFSVRLAR-IGRVHA--VEAEAAALAALDQAA 313

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                +K V +  ++  +     +EF            +  +  DPPR+G +     + +
Sbjct: 314 RKTQGLKPVSVEKRDLFRRPVMTQEFK----------PYDAVVFDPPRAGAEFQCKELAR 363

Query: 314 -AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            A   I  +SCNP +L RDL+IL    + I  +   DQF +T H+E    L +
Sbjct: 364 SAVKKIAAVSCNPLTLARDLAILVEGGYRITGVTPIDQFLWTSHVEVVATLEK 416


>gi|320531384|ref|ZP_08032352.1| TRAM domain protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136385|gb|EFW28365.1| TRAM domain protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 465

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 117/333 (35%), Gaps = 55/333 (16%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R    +  DG      M   ++   + +         I  + +   +  R       +
Sbjct: 175 RTRISLTVSEDGRP---GMHAFRSGTVLPLRRLPLAVPAITEIGLLERSRWRA----HYR 227

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
                   + S    V L+  RLL    R    R          +++ +  A+       
Sbjct: 228 PGMRIEAIAPSGSEPVVLLDERLLTAQARSTGRR----------RVREVVDASA------ 271

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ------GDLLELY 217
                    +    L Y      F Q +      ++E V+    G          +LELY
Sbjct: 272 ---------LGLGELTYSVHAEGFWQVHVDAPRVLVERVVRGVLGENLERAAGRRVLELY 322

Query: 218 CGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
            G G F+L LA       +VL++E  + +V  AR       +++    R++S   +    
Sbjct: 323 SGAGLFTLPLASLVGAGGQVLSLEGNEQAVRDARRT-----LHDHPAARLASGRVSARSV 377

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDL 332
           RE   +          R   + +DPPR G     +  V A     I+ ++C+P +L RDL
Sbjct: 378 RELAGS------FTGGRPDVVVLDPPRQGAGREVIEAVSALGAERIVLVACDPAALARDL 431

Query: 333 S-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
             +L   + +  ++  D FP+T H E   +L R
Sbjct: 432 GTLLRAGYVLGSMSALDMFPHTHHFETIAVLDR 464


>gi|260431992|ref|ZP_05785963.1| tRNA (Uracil-5-)-methyltransferase superfamily protein
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415820|gb|EEX09079.1| tRNA (Uracil-5-)-methyltransferase superfamily protein
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 409

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 118/349 (33%), Gaps = 32/349 (9%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             KV+ +R  +     Q     I  S P   R RA   +             + +     
Sbjct: 80  DWKVEVVRTALAAQGLQAEMRPILTSPPQS-RRRATIAVRRTKKGALAGFHGRASDVITE 138

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I         + A +    A   L    +  L     L+       V     + LD    
Sbjct: 139 IPDCQLLDPALTAAIPVAKALAELGGSRKGVLSVTLTLSEAGLDLAVQ--GGKPLDG--- 193

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
              + L  A    ++ +  +   +   I +      +       T++      +F Q   
Sbjct: 194 --PLELALAQATEQHGLARLAW-DGEVIAMRNPPAQQ---FGPATVV--PPPGAFLQATK 245

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                + + VL    G    +++L+ G G FSL LA+    V AVE A     A      
Sbjct: 246 DGEQALTKAVLE-IVGPAKRVVDLFAGCGTFSLPLAQRA-EVHAVEGAADMTRALDQ--G 301

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +K V   +++  +      E  R          F  + +DPPR+G +     + 
Sbjct: 302 WRKSTGLKQVTTEARDLFRRPLMPDELRR----------FDAVVLDPPRAGAEAQVAELA 351

Query: 313 QAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECG 359
           +A  P I Y+SCNP +  RD  IL    + +E + + DQF ++ H E  
Sbjct: 352 EARRPVIAYVSCNPVTFARDAKILVQEGYALEWVQVVDQFRWSSHSELV 400


>gi|196250365|ref|ZP_03149058.1| (Uracil-5)-methyltransferase [Geobacillus sp. G11MC16]
 gi|196210254|gb|EDY05020.1| (Uracil-5)-methyltransferase [Geobacillus sp. G11MC16]
          Length = 400

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/259 (22%), Positives = 100/259 (38%), Gaps = 30/259 (11%)

Query: 9   QYEQQLAEKVDRLRQMML--AFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           QYE QL  K + ++ ++    F        I    P HYR + EF    +G    H   +
Sbjct: 96  QYEGQLRHKTEHVKALLEQHGFDPNIVRETIGMEHPWHYRNKMEFTFSPEGLLGLHEQGN 155

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRL-----------EPLLRAKLFQIDYLTSQ 113
            +  + + ++  +     I    +E+    R            E LLR  + +  + T +
Sbjct: 156 FR--QIISLETCLIAGERIVKAAMEVARWARDHQLPGYHKDTHEGLLRHVMVRESFATGE 213

Query: 114 SDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG-------RANKTKICLDRD 165
              A+  T      L  A  +   R+  AL   K  + L         +A +T +   RD
Sbjct: 214 VMVALFATEAPEGELKQAADDLTERITKALPEVKSLLWLENRAWADRIQAEQTHVLAGRD 273

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           ++ + L        YR   ++F Q N      ++E  L   K    + +++L+CG G FS
Sbjct: 274 FIYDELC----GFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHEKMIDLFCGVGTFS 329

Query: 225 LVLARHFDRVLAVEIAKPS 243
           L  A+    +  +EI + S
Sbjct: 330 LPFAKRVKALAGIEIVETS 348


>gi|119504603|ref|ZP_01626682.1| hypothetical RNA methyltransferase [marine gamma proteobacterium
           HTCC2080]
 gi|119459625|gb|EAW40721.1| hypothetical RNA methyltransferase [marine gamma proteobacterium
           HTCC2080]
          Length = 391

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/372 (19%), Positives = 129/372 (34%), Gaps = 88/372 (23%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
               +   Y+ Q A K+ RL+  +        Q+       + + YR RA+       D 
Sbjct: 98  GCPWMFMPYQVQSAAKLRRLKSTLEDLDDGTTQLDGLLAAPKELGYRNRAQLKT----DG 153

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                    T+  + +                                    L++++ ++
Sbjct: 154 SKLGYVAAGTRTLVDVTACPI-------------------------------LSARNGES 182

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           + +                 LR AL    ++ +         I LD +     L    + 
Sbjct: 183 LAS-----------------LRKALPNPNWRGRKQDW---QTIDLDDNLEGPSL---NKR 219

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVL 235
           L +R       Q N   N  M EW+  A   +  D  +LEL+ G+GNF+ VLA HF  V+
Sbjct: 220 LPFR-------QGNTQQNAVMREWLAQAIASMPPDAPVLELFAGSGNFTEVLASHFKTVV 272

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AVE  + +++              + V+  +         E   N  + I       + +
Sbjct: 273 AVEGDQQALQQLSDVA-------PERVQAHALNLFSVPAVEAWVNEKQGI-------RVL 318

Query: 296 FVDPPRSGLD--DATVGMVQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPY 352
            +DPPR GL      +  +     ++Y++C+  +  RD    L+    + ++   D FP 
Sbjct: 319 VLDPPREGLKVRTPFLKELAELETVIYVACDLATWARDCKDFLAQGFRLAQVTPLDLFPQ 378

Query: 353 TRHMECGVLLVR 364
           T H+E   +L R
Sbjct: 379 TPHLEVLSVLTR 390


>gi|86356556|ref|YP_468448.1| RNA-methyltransferase protein [Rhizobium etli CFN 42]
 gi|86280658|gb|ABC89721.1| probable RNA-methyltransferase protein [Rhizobium etli CFN 42]
          Length = 416

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 132/356 (37%), Gaps = 35/356 (9%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           A K   +   +          +I  + P   R R  F       D+       ++   + 
Sbjct: 90  AFKRQLVVDALKSKGLTPVVGEIVPARP-GERRRVAFAARKTEKDMLIGFNQAESHHIVA 148

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I+     S  I A +  + A         A+ F+I  L ++S   I      +L D   R
Sbjct: 149 IEECPISSTGIVARLPAIKAIAAALATS-AEPFRIAVLETRSGLDIAVDEIRKLPDPQRR 207

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLTVAGRTLIYRQIENSFTQP 190
           +          A +  + L G A    + L+ + + E  +  V    +        F Q 
Sbjct: 208 K----------AIETVLGLRGIAR---VTLNGEILVEPAKPIVDFGGVEVSPPAGGFAQA 254

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                  M E VLA   G    + +L+ G G FSL LAR   RV AVE    ++ A    
Sbjct: 255 TKPAEEAMAELVLA-HAGKAKRIADLFAGAGTFSLRLAR-IGRVHAVEAEAAALAALDQ- 311

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            AA     +K V +  ++     RR      LK        +  +  DPPR+G +     
Sbjct: 312 -AARKTQGLKPVSVEKRDL---FRRPLMTQELKP-------YDMVVFDPPRAGAEFQCKE 360

Query: 311 MVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           + +     I  +SCNP +L RDL+ L    + I ++   DQF +T H+E    L +
Sbjct: 361 LARSGVKKIAAVSCNPLTLARDLATLVEGGYRITKVTPIDQFLWTSHVEVVATLEK 416


>gi|319938185|ref|ZP_08012583.1| hypothetical protein HMPREF9488_03419 [Coprobacillus sp. 29_1]
 gi|319806706|gb|EFW03355.1| hypothetical protein HMPREF9488_03419 [Coprobacillus sp. 29_1]
          Length = 434

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 142/380 (37%), Gaps = 37/380 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEP----IHYRMRAEFHIWHD 54
             +L    Y+Q L  K   L+  +     F V +L I    P      Y+      + + 
Sbjct: 76  GCSLTALSYKQHLPHKKGILKDALKKYTDFDVESLPIKAVIPAITQTGYKKVVSLPVTYF 135

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRL------EPLLRAKLFQID 108
              +   ++ +++K    ++       LIN  ++++   +           ++  L +  
Sbjct: 136 KGKVAVGIYQRESKYLTFMNNCSMQDPLINQCLVKIENILNEYKVRDYNDKVKKGL-RFM 194

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI---CLDRD 165
            + + + Q  V  +  +   D   E   +    +   K     I  +           + 
Sbjct: 195 KVRNIAGQIQVLFVTGQ---DGISEEVTKAIGQIEEVKSIYFTINTSRHQDFEQQGYKKI 251

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y    L        Y     S    N  + +  L+ ++ +       +L L CG G   L
Sbjct: 252 YGQSTLPFQCFEQQYLYSIKSEFPINPEMEMKKLD-IMKSFIPENTSVLSLNCGIGLLEL 310

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            L++H   V+A++     ++ A+ N    H +NV+ +  +  E T    +++ F      
Sbjct: 311 SLSQH---VVAIDDKNYHIKDAKDNAKFLHKDNVEFICKNIDEATVQQCKKKRF------ 361

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
           DI   R + +     R+      +  V+    ++Y+S +P SL +DL  LS+ + IE + 
Sbjct: 362 DIAVIRCEEL----SRAIKQSLVLSKVKD---VIYVSDHPSSLAKDLDELSSYYQIESII 414

Query: 346 LFDQFPYTRHMECGVLLVRK 365
             D +PYT  ++  V L RK
Sbjct: 415 PLDTYPYTSKLDTIVKLKRK 434


>gi|304555603|ref|NP_001182134.1| tRNA (uracil-5-)-methyltransferase homolog A isoform 4 [Mus
           musculus]
 gi|51316456|sp|Q8BNV1|TRM2A_MOUSE RecName: Full=tRNA (uracil-5-)-methyltransferase homolog A;
           AltName: Full=HpaII tiny fragments locus 9c protein
 gi|26348397|dbj|BAC37838.1| unnamed protein product [Mus musculus]
          Length = 574

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 117/419 (27%), Gaps = 111/419 (26%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQVP------------------------NLQIFRSEPIH-- 42
            Y +QL +K     +++                               L+  +  P    
Sbjct: 169 PYTEQLEQKRLECERVLQKLAKEIGNTNRALLPWLLLQRQQHNKACCPLEGVKPSPQQTE 228

Query: 43  YRMRAEF--HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI------ 94
           YR + EF   +  DG D        + K           ++ I     +++         
Sbjct: 229 YRNKCEFLVGVGVDGKDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKAFQEFIRS 288

Query: 95  -----RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH------ 143
                           Q+   TS   QA+    +H     +     ++     H      
Sbjct: 289 TPYSAYDPETYTGHWKQLTVRTSSRGQAMAIAYFHPQKLSSEEVAGLKASLVCHFMEGPG 348

Query: 144 --ARKYQIQLIGRA-NKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
             +    +  +     KT     + L+    D+ +      L +R   ++F Q N     
Sbjct: 349 KASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAE 408

Query: 197 HMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +L  V+     + G   +L++ CG G   L LA    RV+ +E+ + +VE AR N   N
Sbjct: 409 -VLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKRVVGIELCQEAVEDARMNALTN 467

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                                                 K I             +   + 
Sbjct: 468 D------------------------------------SKVIL-----------AIRKAEN 480

Query: 315 YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHMECGVLLVR 364
              +LY+SCNP +   +   L                +    D FP T H E  +L  R
Sbjct: 481 IKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCEMLILFER 539


>gi|299134743|ref|ZP_07027935.1| (Uracil-5)-methyltransferase [Afipia sp. 1NLS2]
 gi|298590553|gb|EFI50756.1| (Uracil-5)-methyltransferase [Afipia sp. 1NLS2]
          Length = 413

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 70/324 (21%), Positives = 113/324 (34%), Gaps = 31/324 (9%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R RA FH      +L          E + + +      L  A+   + A   +  LL+  
Sbjct: 118 RRRATFHARQGSGELRVGFAAAGRHEIVPVGHCPI---LDPAMDGAIAAANAIAELLKPV 174

Query: 104 LFQIDYLTSQSDQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              +D   S +D  + V +     LD A       L       +            ++ L
Sbjct: 175 AKPLDIQVSATDNGLDVDVRGSGPLDTAMLTKLSGLAKEHRLARLT-------RHGELVL 227

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            +     R+  A  TL       SF QP       +   V    KG +  + +L+CG G 
Sbjct: 228 LQAPPTVRVGRATVTL----PAASFMQPTQAGEETLAALVAERCKGAK-RIADLFCGFGP 282

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+L LA  F RV A +        A  N A      +K +   +++  +     +E    
Sbjct: 283 FALRLAEKF-RVSAFDSDAA--AVAALNDAIRATQGLKPLTAEARDLFRRPLVPQELRE- 338

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLS-ILSTTHT 340
                    F     DPPR G +  +     +   H++ +SCNP +  RD   +L     
Sbjct: 339 ---------FDAAVFDPPRQGAEAQSRQFAASRLTHVVAVSCNPATFARDAKILLGGGFK 389

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +  +   DQF +T H+E      R
Sbjct: 390 LSEVTPVDQFRHTPHVELVARFSR 413


>gi|154508937|ref|ZP_02044579.1| hypothetical protein ACTODO_01453 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798571|gb|EDN80991.1| hypothetical protein ACTODO_01453 [Actinomyces odontolyticus ATCC
           17982]
          Length = 431

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 101/254 (39%), Gaps = 30/254 (11%)

Query: 128 DDAWRECAI---RLRDALHARKYQIQLIGRAN--KTKICLDRDYVDERLTVAGRTLIYRQ 182
           D  WR       R+R    +    + LIG        + +D D +   + V      Y  
Sbjct: 191 DTPWRRLWKPGDRVRAVAPSGGDPVVLIGEDTYATDGLRIDADVLRWNVPVGSGVESYYV 250

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFD---RV 234
             + F Q +      +   VLAA  G         ++ELY G G FS+ LAR      RV
Sbjct: 251 RPSGFWQTHVRGAEVLANAVLAAAFGAGEAGAGRAVMELYSGAGLFSVPLARAVGESGRV 310

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH-SYRFK 293
           + +E  + +V  A  N+A             + ++  A     +   + D+    S    
Sbjct: 311 VTLEGDEGAVRDAGENLA-------------AFDWVDAFAGNVDREGVVDLSGQLSAVPD 357

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQF 350
            +  DPPR+G        + A   P ++ +SC+P +  RDL  L    + +E L  +D F
Sbjct: 358 VVVADPPRAGAGAEVCEAIAATGAPRVVLVSCDPAAGARDLRTLTEAGYQLESLQAWDLF 417

Query: 351 PYTRHMECGVLLVR 364
           P+T H+E   +L R
Sbjct: 418 PHTHHVEMVSVLSR 431


>gi|293192606|ref|ZP_06609560.1| putative tRNA (Uracil-5-)-methyltransferase [Actinomyces
           odontolyticus F0309]
 gi|292820113|gb|EFF79110.1| putative tRNA (Uracil-5-)-methyltransferase [Actinomyces
           odontolyticus F0309]
          Length = 431

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 63/254 (24%), Positives = 102/254 (40%), Gaps = 30/254 (11%)

Query: 128 DDAWRECAI---RLRDALHARKYQIQLIGRAN--KTKICLDRDYVDERLTVAGRTLIYRQ 182
           D  WR       R+R    +    + LIG        + +D D +   + V      Y  
Sbjct: 191 DTPWRRLWKPGDRVRAVAPSGGDPVVLIGEDTYATDGLRIDADVLRWNVPVGSGVESYYV 250

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFD---RV 234
             + F Q +      +   VLAA  G         ++ELY G G FS+ LAR      RV
Sbjct: 251 RPSGFWQTHVRGAEVLANAVLAAAFGAGEAGAGRAVMELYSGAGLFSVPLARAVGESGRV 310

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH-SYRFK 293
           + +E  + +V  A  N+A             + ++  A     +   + D+    S    
Sbjct: 311 VTLEGDEGAVRDAGENLA-------------AFDWVDAFAGNVDREGVVDLSGQLSAVPD 357

Query: 294 TIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350
            +  DPPR+G        + A   P ++ +SC+P +  RDL  L+   + +E L  +D F
Sbjct: 358 VVVADPPRAGAGAEVCEAIAATGAPRVVLVSCDPAAGARDLRTLTEDGYQLESLQAWDLF 417

Query: 351 PYTRHMECGVLLVR 364
           P+T H+E   +L R
Sbjct: 418 PHTHHVEMVSVLSR 431


>gi|163761045|ref|ZP_02168123.1| putative 23S rRNA (uracil-5-)-methyltransferase [Hoeflea
           phototrophica DFL-43]
 gi|162281826|gb|EDQ32119.1| putative 23S rRNA (uracil-5-)-methyltransferase [Hoeflea
           phototrophica DFL-43]
          Length = 419

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 128/308 (41%), Gaps = 32/308 (10%)

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
                Q+ + + ++  +  +  INA +  +        + + + F++  + + +   +  
Sbjct: 137 GFNKAQSHQIVPVESCVVATARINAALPVLTRMAAAVAIGK-EAFRLTVVDTAAGFDLAV 195

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--VAGRTL 178
               +L +        RLR     RK Q    G A    +  + + + E+    +   T+
Sbjct: 196 DGPFKLSETE------RLRIIAVTRKEQ----GIAR---LSFNGELLIEKQPPQLTFGTV 242

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                   F Q  +     ++  ++         +++L+ G+G F+L LA +   V AVE
Sbjct: 243 TVNPPPGGFVQA-SEAAEAIMGDLVTGHLKKAKRVVDLFSGSGTFTLRLAAN-SHVHAVE 300

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
             + ++ A     AA H   +K V +  ++     RR   F+ LK        ++ +  D
Sbjct: 301 SEEAALAALDR--AARHAQGIKPVSVERRDL---FRRPVMFSELK-------TYQGLAFD 348

Query: 299 PPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           PPR+G +     + +   P I  +SCNP +L RDL IL +  + I  +   DQF ++ H+
Sbjct: 349 PPRAGAEAQAREIAKSMVPRIAAVSCNPVTLARDLEILIAGGYRITSVTPIDQFLWSSHV 408

Query: 357 ECGVLLVR 364
           E   LL R
Sbjct: 409 EVVALLER 416


>gi|258542731|ref|YP_003188164.1| ribosomal RNA large subunit 23S/tRNA (uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256633809|dbj|BAH99784.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636868|dbj|BAI02837.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639921|dbj|BAI05883.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642977|dbj|BAI08932.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646032|dbj|BAI11980.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649085|dbj|BAI15026.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652072|dbj|BAI18006.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655129|dbj|BAI21056.1| ribosomal RNA large subunit 23S/tRNA (Uracil-5-)methyltransferase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 432

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 137/374 (36%), Gaps = 32/374 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI--HYRMRAEFHIWHDGDDLY 59
             TL   +    L  KV  ++  +      NL  F ++ +  H R RA+  +    D + 
Sbjct: 74  GCTLQHVKPAAILQWKVATVQHALQKAGFSNLPAFSAKQVQPHSRRRADLAVRRQPDGIM 133

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDYLTSQSDQAI 118
             +  + + E   +   +     I A +    AT+R L  + R     I+ L S  D   
Sbjct: 134 IGLHARNSHEVTDLTTCVVLHPDILAALPAFRATLRSLNAIRREANLHINLLDSGLD--- 190

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V L     L    R    +L    H  +   Q I      ++      V + +       
Sbjct: 191 VLLQTDGPLTAPDRVRLAQLATEQHIPRISWQQIKDTGLPEVAAQSGSVVQTIASHQIA- 249

Query: 179 IYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
                  +F Q       ++ E V   L      +  + ELY G G  +  LA H  RV 
Sbjct: 250 ---PPAGTFFQATRESEQYIQEAVVKSLPTKLNRRDVITELYAGCGTLTFPLAEHA-RVN 305

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           A E   P++EA +    A     +                 R+ N    +         +
Sbjct: 306 AYEGYAPALEALK---KATGGTRISPFC-------------RDLNHQPLLAKEIAASAVV 349

Query: 296 FVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
            +DPP +G       + Q  P HI+Y+SCNP +L +D S+L+   +T+E + + DQF ++
Sbjct: 350 VLDPPHAGAKLQMRQIAQGLPNHIVYVSCNPAALVQDASLLAKAGYTVENVTVIDQFLWS 409

Query: 354 RHMECGVLLVRKPS 367
             +E      R+ S
Sbjct: 410 AEIEAVCSFKRESS 423


>gi|325672664|ref|ZP_08152360.1| 23S rRNA methyltransferase/RumA [Rhodococcus equi ATCC 33707]
 gi|325556541|gb|EGD26207.1| 23S rRNA methyltransferase/RumA [Rhodococcus equi ATCC 33707]
          Length = 422

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 123/361 (34%), Gaps = 52/361 (14%)

Query: 17  KVDRLRQMMLAFQVPNLQIFRSE-P-----IHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           K   + + +         +     P       +R R    +   G   +H          
Sbjct: 101 KAFVVAEQLRRIAGVEQDVAVEPLPGTGNGTGWRSRVRLAVDASGRPGFHRY------RS 154

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + I+ F+        + +   A +           Q+  L +  D+ +V       +  A
Sbjct: 155 LEIETFLAC----PQIDLSAYAGLSERSWQPGGEVQV-VLDADGDRHVV------EIAPA 203

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                 R          +          ++ +      ER+      L        F Q 
Sbjct: 204 KVSRTGRRSPGRRGATARRAASSGTRAERVVIGSGRPVERVGGREWHL----AATGFWQA 259

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEA 246
           + G      + V    +   GD + +LY G G F+  LA       RV +VE +K +V  
Sbjct: 260 HRGAAETYAQVVGEWAQPSAGDNVWDLYGGVGVFAATLADQVGVTGRVDSVEFSKQAVAD 319

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
               +A     ++  VR+ S       R ER  + L            + +DPPR+G   
Sbjct: 320 GGEALA-----DLLQVRLHSA------RVERALHDLP-------TPDVVVLDPPRTGAGR 361

Query: 307 ATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             V  +   A   I++I C+P S  RD+S+  +  + +E++  FD FP T H+E   LL 
Sbjct: 362 EVVDTIVAAAPQRIVHIGCDPASFARDVSLFRAGGYRLEQVRAFDAFPLTHHVESLALLT 421

Query: 364 R 364
           R
Sbjct: 422 R 422


>gi|159046032|ref|YP_001534826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dinoroseobacter shibae
           DFL 12]
 gi|157913792|gb|ABV95225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dinoroseobacter shibae
           DFL 12]
          Length = 414

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 103/315 (32%), Gaps = 31/315 (9%)

Query: 52  WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
                        + +   + I      +  I   +  +   + L    + +L     ++
Sbjct: 122 RRLKKGTLLGFHTRASDTIVDIPGCEVLAPAITEALPSLAEFLPLLGSRKGELALAVTVS 181

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
                  V +   + LD A R     L   L   +  +              + ++  R 
Sbjct: 182 EAGLD--VDIRGGKPLDPALRLSLTALTQRLDLARLSLD------------GKVFLTLRP 227

Query: 172 TVAGRT-LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
                          +F Q  A     +L  V  A  G    + +L+ G G F+L LA  
Sbjct: 228 PAQHFGPASVTPPPGAFLQATAPGEAALLAAVTEA-VGPARRIADLFAGCGTFALPLATR 286

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V AVE     +  A  +        +  V   +++     RR    + L        
Sbjct: 287 A-EVHAVEGDADML--AALDAGWRKTPGLSKVTTEARDL---FRRPLLPDDLA------- 333

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFD 348
           RF  + +DPPR+G +  T  +  A P  I  +SCNP +  RD   L    + +  + + D
Sbjct: 334 RFGAVVIDPPRAGAEAQTAALASAQPDRIAAVSCNPVTFARDAKTLCDAGYALRWVQVVD 393

Query: 349 QFPYTRHMECGVLLV 363
           QF ++ H+E      
Sbjct: 394 QFRWSPHVELAAAFT 408


>gi|284990399|ref|YP_003408953.1| deoxyribonuclease/rho motif-related TRAM [Geodermatophilus obscurus
           DSM 43160]
 gi|284063644|gb|ADB74582.1| deoxyribonuclease/rho motif-related TRAM [Geodermatophilus obscurus
           DSM 43160]
          Length = 440

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 126/370 (34%), Gaps = 59/370 (15%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPN----------LQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           E QL  K + +R+ +                 ++     P+ +R RA F +   G     
Sbjct: 111 EGQLRLKAEVVREQLTRLAGLTAEDPVVRDLTVEALPGGPLRWRTRARFAVDRAGAP--- 167

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
            +   ++ + + ++                   I +EP  RA L +        D A+  
Sbjct: 168 GLRRHRSHDLVLLEDCP----------------ITVEPAARAVLDRRWPGAGAVDVAV-- 209

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
                  D A      RL      +  Q+   G         D      R         +
Sbjct: 210 -------DSAGTVTTTRLDRGGRPQSTQVLRAGEDGGG--WDDAREPARRAARWAAGRDW 260

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH---FDRVLA 236
                 F Q +      +   V        G+ +L+LY G G F   LA       RV+ 
Sbjct: 261 EVEGTGFWQVHPAAADALTGTVAGYAAVRAGETVLDLYAGAGLFGGALAPAVGSAGRVVC 320

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE  + +  AA+       +   ++ +            E     L ++D        I 
Sbjct: 321 VEADEAACAAAQA--NLAALTQAEVWQGEVD-------AEGLIGLLAELDAE---PDVIV 368

Query: 297 VDPPRSGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYT 353
           +DPPR+G   A    +  A P  ++Y++C+P SL RD++  +   + +  L  FD FP T
Sbjct: 369 LDPPRAGAGTAVSRVLAAAGPRAVVYVACDPASLARDVAAFAAGGYRLSGLRGFDAFPMT 428

Query: 354 RHMECGVLLV 363
            H+EC  LL 
Sbjct: 429 AHVECVALLE 438


>gi|239611924|gb|EEQ88911.1| tRNA(m5U54)methyltransferase [Ajellomyces dermatitidis ER-3]
          Length = 575

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 136/408 (33%), Gaps = 60/408 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEPIHYRMRAEF------ 49
              L +  YE QL  K   L +    F     ++          P+ Y  R +       
Sbjct: 154 GCQLQMLPYEDQLKHKKRILEKAYANFSGLLPELIPAIRDTMGSPLQYGYRTKLTPHFVM 213

Query: 50  -----HIWHDGDD---LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
                    DG+           +  +  + I+    G+ ++   +      +       
Sbjct: 214 SSRIRRASVDGEKSEIPPIGFMLKGRRTVIDIEDCPLGTDIVRLGLKSERKRVAENLHSY 273

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN--KTK 159
           +K   +    S + +        +  ++         R+ +H    Q+      +  + K
Sbjct: 274 SKGATLLLRESTTRRYKRASTSPQPSENGSERSFSEERELVHEHGEQVIRTEYPDFIEEK 333

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVL--------AATK 207
            C+     +E          +      F Q N  I      ++ +  L        A   
Sbjct: 334 RCITDQ--NETSIEYVDNYKFMNKAGQFFQNNNSILTPFTQYIRDNALLPPSRLSTAQPA 391

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                LL+ Y G+G F++ L+  F   L ++I+ PS+ AAR N  AN ++N       + 
Sbjct: 392 PKLKYLLDAYSGSGLFTVTLSPLFLSSLGIDISIPSIAAARMNARANKLHNTGFAAADAA 451

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325
              + +    +                + +DPPR G D   +  +   A   ++Y+SCN 
Sbjct: 452 AIFKDVPYPPD-------------QTLLVIDPPRKGCDTNFLEQLLSYAPARVVYVSCNV 498

Query: 326 DSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLVR 364
            +  RD+ +L            + IE +  FD FP T H+E   +L +
Sbjct: 499 HTQARDVGVLVQGGNINGREVRYEIESIKGFDFFPQTGHVEGVAILNK 546


>gi|220922787|ref|YP_002498089.1| (uracil-5)-methyltransferase [Methylobacterium nodulans ORS 2060]
 gi|219947394|gb|ACL57786.1| (uracil-5)-methyltransferase [Methylobacterium nodulans ORS 2060]
          Length = 421

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/330 (19%), Positives = 112/330 (33%), Gaps = 41/330 (12%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R RA FH+              ++   + ID+       ++      +A +   PL    
Sbjct: 120 RRRATFHVRRIEGAAEAGFMAARSHALVAIDHCPITEPALHRAPE--VARLLARPLGGGG 177

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
                  T       + L  H   D   R+  + L +               +  ++ L 
Sbjct: 178 KPLDVQATVTEGGLDIDLRGHGPADGRARQVLVALAETC-------------DLARLSLH 224

Query: 164 RDYVDERLTVAGRTLIYRQ--IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
            + + ER     R            F Q        +L  ++    G    + +L+ G G
Sbjct: 225 GEVLVERRPPVIRAGRAALVPPPGGFLQA-TQAGEALLGELVVTAMGGAKRIADLFSGAG 283

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR----RER 277
            FSL LA     V AVE    S+ A                      FT  +R      R
Sbjct: 284 AFSLRLAEE-RAVHAVEGDAASLAALDRAAR----------------FTPGLRSVTTERR 326

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL- 335
           +  R   +     RF  +  DPPR+G +     + +   P ++ +SC+  S  RD ++L 
Sbjct: 327 DLFRRPLLAPELDRFDAVVFDPPRAGAEAQAARLAESKVPVVVGVSCDAGSFARDAALLL 386

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +  + ++ +   DQF ++ H+E   +  R+
Sbjct: 387 AGGYRLDEVVPIDQFRHSPHVELVGVFRRE 416


>gi|327352820|gb|EGE81677.1| tRNA(M5U54)methyltransferase [Ajellomyces dermatitidis ATCC 18188]
          Length = 625

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 136/408 (33%), Gaps = 60/408 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEPIHYRMRAEF------ 49
              L +  YE QL  K   L +    F     ++          P+ Y  R +       
Sbjct: 204 GCQLQMLPYEDQLKHKKRILEKAYANFSGLLPELIPAIRDTMGSPLQYGYRTKLTPHFVM 263

Query: 50  -----HIWHDGDD---LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
                    DG+           +  +  + I+    G+ ++   +      +       
Sbjct: 264 SSRIRRASVDGEKSEIPPIGFMLKGRRTVIDIEDCPLGTDIVRLGLKSERKRVAENLHSY 323

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN--KTK 159
           +K   +    S + +        +  ++         R+ +H    Q+      +  + K
Sbjct: 324 SKGATLLLRESTTRRYKRASTSPQPSENGSERSFSEERELVHEHGEQVIRTEYPDFIEEK 383

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVL--------AATK 207
            C+     +E          +      F Q N  I      ++ +  L        A   
Sbjct: 384 RCITDQ--NETSIEYVDNYKFMNKAGQFFQNNNSILTPFTQYIRDNALLPPSRLSTAQPA 441

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                LL+ Y G+G F++ L+  F   L ++I+ PS+ AAR N  AN ++N       + 
Sbjct: 442 PKLKYLLDAYSGSGLFTVTLSPLFLSSLGIDISIPSIAAARMNARANKLHNTGFAAADAA 501

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325
              + +    +                + +DPPR G D   +  +   A   ++Y+SCN 
Sbjct: 502 AIFKDVPYPPD-------------QTLLVIDPPRKGCDTNFLEQLLSYAPARVVYVSCNV 548

Query: 326 DSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLVR 364
            +  RD+ +L            + IE +  FD FP T H+E   +L +
Sbjct: 549 HTQARDVGVLVQGGNINGREVRYEIESIKGFDFFPQTGHVEGVAILNK 596


>gi|148253962|ref|YP_001238547.1| putative RNA methyltransferase [Bradyrhizobium sp. BTAi1]
 gi|146406135|gb|ABQ34641.1| 23S rRNA m(5)U-1939 methyltransferase [Bradyrhizobium sp. BTAi1]
          Length = 411

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 120/325 (36%), Gaps = 33/325 (10%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQ-QTKERMRIDYFMPGSLLIN-ALMIEMMATIRLEPLLR 101
           R RA FH      D+  + F    + + + ID        ++ AL         L+P  +
Sbjct: 116 RRRATFHARMGTHDVLRVGFSATGSHDIVPIDRCPILDPALDGALEAAWALAEALKPTGK 175

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
               Q    T+  +   + +     L  A      RL +       Q +L       ++ 
Sbjct: 176 PLDIQ---ATATHNGLDIDVRGSGPLPPARVAALSRLAE-------QHRLARLTRHGELV 225

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L R+     +  A  TL       SF Q         L  ++         + +L+CG G
Sbjct: 226 LMRNAPTVTMGTAQVTL----PPGSFLQA-TVQGEETLARLVLERTAKAKHVADLFCGVG 280

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F+L LA    RV A++    S+ A +          +K ++  +++     RR      
Sbjct: 281 PFALRLAARA-RVTAMDNDAGSIAALQKAA---GCPGLKPIKAEARDL---FRRPLMPAE 333

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL-STTH 339
           L+DID        +  DPPR G       +     P I+ +SCN  +  RD+ +L    +
Sbjct: 334 LRDIDA-------VVFDPPRQGAQAQAKQLAASKVPVIVAVSCNVTTFARDMRLLIDGGY 386

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            +E +   DQF +T H+E    L R
Sbjct: 387 KLETVVPVDQFRHTPHVELVARLAR 411


>gi|261201804|ref|XP_002628116.1| tRNA(m5U54)methyltransferase [Ajellomyces dermatitidis SLH14081]
 gi|239590213|gb|EEQ72794.1| tRNA(m5U54)methyltransferase [Ajellomyces dermatitidis SLH14081]
          Length = 575

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 136/408 (33%), Gaps = 60/408 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEPIHYRMRAEF------ 49
              L +  YE QL  K   L +    F     ++          P+ Y  R +       
Sbjct: 154 GCQLQMLPYEDQLKHKKRILEKAYANFSGLLPELIPAIRDTMGSPLQYGYRTKLTPHFVM 213

Query: 50  -----HIWHDGDD---LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
                    DG+           +  +  + I+    G+ ++   +      +       
Sbjct: 214 SSRIRRASVDGEKSEIPPIGFMLKGRRTVIDIEDCPLGTDIVRLGLKSERKRVAENLHSY 273

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN--KTK 159
           +K   +    S + +        +  ++         R+ +H    Q+      +  + K
Sbjct: 274 SKGATLLLRESTTRRYKRESTSPQPSENGSERSFSEERELVHEHGEQVIRTEYPDFIEEK 333

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVL--------AATK 207
            C+     +E          +      F Q N  I      ++ +  L        A   
Sbjct: 334 RCITDQ--NETSIEYVDNYKFMNKAGQFFQNNNSILTPFTQYIRDNALLPPSRLSTAQPA 391

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                LL+ Y G+G F++ L+  F   L ++I+ PS+ AAR N  AN ++N       + 
Sbjct: 392 PKLKYLLDAYSGSGLFTVTLSPLFLSSLGIDISIPSIAAARMNARANKLHNTGFAAADAA 451

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325
              + +    +                + +DPPR G D   +  +   A   ++Y+SCN 
Sbjct: 452 AIFKDVPYPPD-------------QTLLVIDPPRKGCDTNFLEQLLSYAPARVVYVSCNV 498

Query: 326 DSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLVR 364
            +  RD+ +L            + IE +  FD FP T H+E   +L +
Sbjct: 499 HTQARDVGVLVQGGNINGREVRYEIESIKGFDFFPQTGHVEGVAILNK 546


>gi|213028556|ref|ZP_03343003.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 324

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/294 (20%), Positives = 106/294 (36%), Gaps = 27/294 (9%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +V ++    S    YR RA   +    D    + F +  + + +
Sbjct: 56  QQRSKSAALARLM-KHEVNDIIAGAS--WGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 112

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 113 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 170

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 171 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLTFSPRDFIQVN 222

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE  +  VE  R N
Sbjct: 223 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVQALVEKGREN 282

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
              N ++NV     + +E             +         F  + +DP R+G 
Sbjct: 283 AIRNGLHNVTFFHENLEE------------DVTKQPWAKNGFDKVLLDPARAGA 324


>gi|309807713|ref|ZP_07701650.1| RNA methyltransferase, TrmA family [Lactobacillus iners LactinV
           01V1-a]
 gi|308169044|gb|EFO71125.1| RNA methyltransferase, TrmA family [Lactobacillus iners LactinV
           01V1-a]
          Length = 276

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 106/278 (38%), Gaps = 26/278 (9%)

Query: 20  RLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
            ++  +L F   N Q       I   +  +YR +A++ I +  + +   M+  ++++ + 
Sbjct: 1   MIKDSLLKFHPRNYQKIKIKNTIPAPKQWYYRNKAQYQIENIKNKISLGMYAPKSQKIID 60

Query: 73  IDYFMPGSL-----------LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           +      S            LI  + I +  +   +  ++  + +  + T +    +VT+
Sbjct: 61  LPIMPTQSKNTQKVEFAIKKLIEKMHIAIADSRYKKDGIKTVVVRQSHATDEIQVTLVTI 120

Query: 122 IYHRLLDDAWRECAIRLRDAL---HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
             +    D   E  I L + +            +   NKT   + ++Y+ E++       
Sbjct: 121 GKNIKNLDKLAEKIIELENVVSVFQNESQWNNPLVWGNKTTKLIGKNYITEQILNK---- 176

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAV 237
            +     +F Q N      +    L   +     +L + Y G G   ++ +    +V+ +
Sbjct: 177 KFILSPRAFFQLNPEQTEVLYSTALNYLELNANSILVDAYAGVGTLGILASEKVKQVIGI 236

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           E    ++  A++N   N+V N + +  S ++F    ++
Sbjct: 237 ESIPEAIADAQFNCRLNNVKNAEYINSSVEKFYPKCKK 274


>gi|291301985|ref|YP_003513263.1| deoxyribonuclease/rho motif-related TRAM [Stackebrandtia
           nassauensis DSM 44728]
 gi|290571205|gb|ADD44170.1| deoxyribonuclease/rho motif-related TRAM [Stackebrandtia
           nassauensis DSM 44728]
          Length = 387

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 128/367 (34%), Gaps = 79/367 (21%)

Query: 13  QLAEKVDRLRQMMLAF-QVPNLQI----FRSEP---IHYRMRAEFHIWHDGDDLYHIMFD 64
           QL  K   LR+ +     +P  ++      + P   + +R R ++ + + G      +  
Sbjct: 84  QLRLKTAVLREQLTRLAGLPESEVSDYTVEALPGGLLGWRTRMQYSVDNTGRP---GLRG 140

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            ++++ + ID  +     I A  +                                    
Sbjct: 141 HRSRDLVPIDDCLIADDRIRATDV------------------------------------ 164

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
             L   W+   +    A  A +  +            +    + E +        +R   
Sbjct: 165 --LGRNWKGSNVVGVAASDADEVSVYTQRDRRGKARLVSGPPLAEHIVSGHW---FRLDA 219

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIA 240
            +F QP+      +   V   ++    + + +LY G G F+ VLA       RV+AVE  
Sbjct: 220 EAFWQPHTLAADTLASRVTELSQPADAETVWDLYAGAGLFAAVLADEVGPSGRVIAVESD 279

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +  AA  N+A   +  V++ R    E                   H      + +DPP
Sbjct: 280 TRAATAA--NLA--DLPQVEVRRSDVAEAVH----------------HLPSPDIVVLDPP 319

Query: 301 RSGLDDATVGMVQAY-PHIL-YISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHME 357
           RSG     V  + A  P ++ Y++C+P +L RDL   +   ++I  L  +D FP T H E
Sbjct: 320 RSGAGADLVKAIAAAAPRVITYVACDPAALARDLKTFAANGYSISTLEAYDAFPMTHHFE 379

Query: 358 CGVLLVR 364
              +L R
Sbjct: 380 TIAVLRR 386


>gi|83950748|ref|ZP_00959481.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius
           nubinhibens ISM]
 gi|83838647|gb|EAP77943.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius
           nubinhibens ISM]
          Length = 410

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 124/356 (34%), Gaps = 36/356 (10%)

Query: 15  AEKVDRLRQMMLAFQVPN--LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K   +   + A  +    L I  S     R RA                 + +   + 
Sbjct: 81  EWKQGIVEAALRAQGIEASYLPIHVSPAQS-RRRATISARRTKKGAMAGFHARASDAIID 139

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I         +            +    + ++     +T+      V L   + LD    
Sbjct: 140 IPDCKLLHPDLLRGTALAAELAEVAGSRKGEISIACTVTAAGLD--VDLRGAKPLDGP-- 195

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ--IENSFTQP 190
                LR AL     + +L   +++       D V + L  A      +      +F Q 
Sbjct: 196 -----LRAALGDVARRQKLARLSHE------GDVVCQELPPAQSFGRAQVVPPPGAFLQA 244

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                  ++  V AA  G  G +++L+ G G FS  LA    +V AVE A+  ++     
Sbjct: 245 TREGEAALVADVRAALAG-AGKVVDLFAGCGTFSFPLAETA-QVHAVEGARDMID----- 297

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                  NV+ +R  + E     R       L++       +  + +DPPR+G +     
Sbjct: 298 ALQAGWRNVQGLRTMTAEVRDLFRDPLRAEELRE-------YDGVCLDPPRAGAEAQVRE 350

Query: 311 MVQAY-PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + Q+    I Y+SC+P S  RD   +L+  + +  + + DQF ++ H+E      R
Sbjct: 351 LAQSDVARIAYVSCSPASFARDARHLLAAGYEMGPVRVVDQFRWSSHVELVTSFAR 406


>gi|118589266|ref|ZP_01546672.1| RNA methyltransferase putative, TrmA family protein [Stappia
           aggregata IAM 12614]
 gi|118437966|gb|EAV44601.1| RNA methyltransferase putative, TrmA family protein [Stappia
           aggregata IAM 12614]
          Length = 410

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 126/365 (34%), Gaps = 37/365 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           L  D Y   LA K   + + +    +  ++    +     R RA       G        
Sbjct: 77  LAEDPY---LAWKRGLVEKSLRDRGIETDVSSTIAATAGGRRRAVLTATRAGRHTLLGYH 133

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           ++ +   + I        +I   +  + +        + +L     +T+           
Sbjct: 134 EKASHRLVDITECPVLDPVIVEALPGLKSLASEVLPKKGELRMTVLVTTTGLDV------ 187

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQ 182
              LD A +    ++  AL  +     L   +   ++ L+ R  + +   +         
Sbjct: 188 --ALDKADKGYERKIP-ALSQKVVDQNLSRLSVNGEVILELRPPLLDMGGIGIVA----- 239

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
               F Q       H L  ++    G    + +L+ G G F+L L R  + V AVE    
Sbjct: 240 APGGFAQA-TLAAEHALSKLVMDGVGKAKTIADLFSGVGTFALRLGRQAN-VHAVEGDAA 297

Query: 243 SVEAARYNIAA-NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           ++ A    +     +  V   R             R+ +R   +      +  +  DPPR
Sbjct: 298 ALAAFDKALRKPQGLKKVTFER-------------RDLSRRPLVKDELEPYDAVVFDPPR 344

Query: 302 SGLDDATVGM-VQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECG 359
           +G       + +     I+ +SCNP +L RDL  +L   + ++ +   DQF Y+ H+E  
Sbjct: 345 AGAQAQAEQLALSKVKTIVAVSCNPATLARDLRILLDGGYVLQSVTPVDQFHYSPHIEAV 404

Query: 360 VLLVR 364
            +L R
Sbjct: 405 AVLTR 409


>gi|170770019|ref|ZP_02904472.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia albertii
           TW07627]
 gi|170121085|gb|EDS90016.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Escherichia albertii
           TW07627]
          Length = 147

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 18/154 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+CG G F L  A    ++  +EIA  ++  A+ + A   +  ++   + S +F  A
Sbjct: 1   MWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATA 60

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCR 330
                               + + V+PPR G+       +    P  I+Y SCN  ++ +
Sbjct: 61  ---------------QGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMTK 105

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D+  L   + IER+ LFD FP+T H E   LLV+
Sbjct: 106 DIREL-PGYHIERVQLFDMFPHTAHYEVLALLVK 138


>gi|163745087|ref|ZP_02152447.1| RNA methyltransferase, putative [Oceanibulbus indolifex HEL-45]
 gi|161381905|gb|EDQ06314.1| RNA methyltransferase, putative [Oceanibulbus indolifex HEL-45]
          Length = 407

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 138/354 (38%), Gaps = 34/354 (9%)

Query: 15  AEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             KVD +R  + A  +    +  ++ P   R RA F               + +   + +
Sbjct: 79  TWKVDVVRNALSAHGLETEFRPIQTSPAQSRRRATFAARRTKKGAMAGFHGRASDVLIEV 138

Query: 74  DYFMPGSLLIN-ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI-VTLIYHRLLDDAW 131
               PG  L++ AL+  +     L  +  ++  ++    + SD+ + V++   + LD   
Sbjct: 139 ----PGCQLVDPALLPGLKVAEELALIGTSRKAELAVTVTLSDEGLDVSVTKGKPLDGPL 194

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           R+   +  +AL   +        A   +    + +    +T             +F Q  
Sbjct: 195 RQQLAQTCEALALARLTWDGEVIA--MRAPPAQTFGTAPVTP---------PPGAFLQAT 243

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +L  V  A  G    +++L+ G G FSL LA+   RV AVE     +       
Sbjct: 244 RHGEAALLAAVTEA-VGEADFVVDLFAGCGTFSLPLAQKA-RVHAVEGDAEMIA-----A 296

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                   K  +  + E     RR    + L  +D        + +DPPR+G +     +
Sbjct: 297 LEGGWRRAKGAKPLTTETRDLFRRPLLPDELAKVDA-------VVLDPPRAGAEAQVAEI 349

Query: 312 VQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           ++A  P + Y+SC+P S  RD+  L ++ + ++ + + DQF ++ H+E    L 
Sbjct: 350 IRAQVPRLAYVSCSPVSFARDVQKLVASGYRLDWIQVVDQFRWSSHVELAACLT 403


>gi|148557553|ref|YP_001265135.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sphingomonas wittichii
           RW1]
 gi|148502743|gb|ABQ70997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sphingomonas wittichii
           RW1]
          Length = 405

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 119/351 (33%), Gaps = 30/351 (8%)

Query: 19  DRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYF 76
            R+   +       P L          R RA  H    G  +     + Q+   + +   
Sbjct: 80  QRITGALAQQKIDAPPLAPAALSAPGTRRRASLHAERQGKRMLLGFNEAQSHHIVDLRMC 139

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
                 + AL+  +   +   P+LR +        +  DQ +  LI    +D       +
Sbjct: 140 AVLDPKLFALVDPLRRLLH--PMLRDR-RAAGVQMTLVDQGVDLLIEKVEVDGLAAIEGL 196

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                 H         G   + +      +  E  TV    +        F Q  A    
Sbjct: 197 NDFAQAHGLARLSVDDGYGPQPR------WEPEPATVTLGGVAVPFPAGGFLQATAEGEA 250

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            +L  V  A  G    + +L+ G G FSL LAR   RV A E A+ +V      + A   
Sbjct: 251 ALLAEV-EAIVGDARLVADLFAGLGTFSLPLART-RRVYAAEGARDAV----LGLKAAAD 304

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            + +++ +  ++  +      E +R          F  + +DPPR+G  +    +     
Sbjct: 305 RSQRMIGIDHRDLFRRPLDAAELDR----------FDVVVLDPPRAGAREQMPALAATTK 354

Query: 317 --HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
              I Y+SCNP +  RD   L      +ER+    QF ++ H E      R
Sbjct: 355 VRRIAYVSCNPSTFGRDARTLVEGGWRLERITPVGQFRWSTHTELVAAFAR 405


>gi|297626449|ref|YP_003688212.1| SAM-dependent methyltransferase related to tRNA (tRNA
           (uracil-5-)-methyltransferase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922214|emb|CBL56784.1| SAM-dependent methyltransferase related to tRNA (tRNA
           (uracil-5-)-methyltransferase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 392

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/234 (23%), Positives = 91/234 (38%), Gaps = 32/234 (13%)

Query: 138 LRDALHARKYQIQLIGRA----NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
           L   +H  +  +          +  +  +    V E++     T  +R   + F QP+  
Sbjct: 180 LAGQVHGDELIVATAASGVCVIDSGRTLMGEAVVTEQVG----THSFRARADGFWQPHRL 235

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
               +   +L A     G+  L+LYCG G F+  L     RV  +E+  P++  AR N  
Sbjct: 236 APGLLTSQMLLALDPRPGEHALDLYCGVGVFAAALDDAGCRVRGIEMDGPAIRLARTN-- 293

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              V   + V           R               +R   + +DPPR+G     V  +
Sbjct: 294 ---VPRAQFVAGRVDRVLSRGR---------------HRADLVVLDPPRAGAGKRAVDQI 335

Query: 313 QA--YPHILYISCNPDSLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLV 363
                  I Y++C+P +L RDL+  +   +++  +  FD FP T H+EC   L 
Sbjct: 336 AGLRPRRIAYVACDPAALARDLASFARHDYSVTNIKGFDLFPMTHHVECVATLE 389


>gi|295689033|ref|YP_003592726.1| (uracil-5)-methyltransferase [Caulobacter segnis ATCC 21756]
 gi|295430936|gb|ADG10108.1| (Uracil-5)-methyltransferase [Caulobacter segnis ATCC 21756]
          Length = 416

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 132/364 (36%), Gaps = 32/364 (8%)

Query: 7   IDQYEQQLAEKVDRLR-QM-MLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLYHIM 62
            + Y   LA K +++R Q+ M   +   L  F + P   R R   H      G       
Sbjct: 79  AEPY---LAWKAEQVRLQLSMEGLETEILPTFAAPPAS-RRRVALHARKGPKGAGALLGF 134

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            ++++   + I            +          EP L           + +   +   +
Sbjct: 135 KERRSWSLVPIKECPVTDPR--LVAALPALARLAEPFLEHPKSAPTLHVTLTGTGLDIDV 192

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                         R+R A+ A +     +  A +T           +L  A   L    
Sbjct: 193 TGVERKSGGLSADARMRAAMAASEGDFARVTLAGET--VYGARQPLVKLGQAVVAL---- 246

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              +F Q        M+++ +A  +G    L +LYCG G F+  LA     V A E++ P
Sbjct: 247 PPGAFLQAVPAAERAMVDFTVAEAQGAS-RLADLYCGVGTFTFRLAE-IGAVHAAEMSAP 304

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++EA +   A    + +K +   +++            R   +     +   + +DPPR+
Sbjct: 305 AIEALKT--AMGSTSGLKPIHAEARDLV----------RRPVLSTELAKTDVVVIDPPRA 352

Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G  + TV + +     ++ +SCNP +  +D   L      +E++   DQF ++ H+E   
Sbjct: 353 GAAEQTVEIAKSKVAKVISVSCNPGTFAKDARALVEAGFRLEKVLPVDQFVWSPHIELVG 412

Query: 361 LLVR 364
           +  R
Sbjct: 413 VFTR 416


>gi|118369094|ref|XP_001017752.1| hypothetical protein TTHERM_00437560 [Tetrahymena thermophila]
 gi|89299519|gb|EAR97507.1| hypothetical protein TTHERM_00437560 [Tetrahymena thermophila
           SB210]
          Length = 648

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 139/432 (32%), Gaps = 77/432 (17%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP---------------------- 40
             L    YE+QL  K     +++  FQ       RS+                       
Sbjct: 222 CPLWKTPYEEQLEIKKKDFIEIIKNFQKRAKDSIRSDESTPIWVTREPKITDFLECDEQY 281

Query: 41  -IHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLL--------------I 83
             HYR + EF I  +      + +++    K    ID      +               I
Sbjct: 282 RFHYRNKTEFTIGLNHLGEIKVGYNRTNFDKGIAFIDDANKNCVSSKESVILAQQLENYI 341

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL----- 138
               + +      +   R  + +  + T +    IV    +      + +    L     
Sbjct: 342 KETGLPVYDRFVHQGFWRYFVVRQSFKTKEILINIVAKGSYCSDATQFEQIKQGLIKIFQ 401

Query: 139 RDALHAR-KYQIQLIGR----ANKTKIC----LDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           +++L    +Y I  IG     A    I     +D  Y             +    N+F Q
Sbjct: 402 KESLPENFEYNITSIGFQSYEAPSDSIPQDGQIDIIYGSRSYKENILGKTFDISANAFLQ 461

Query: 190 PNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            +      + + + + T  +      L++  G G   + LA     V+ +E+ + +   A
Sbjct: 462 VHTPQCERLYKLIGSLTGELNEKTIFLDICSGIGTIGICLANSAKEVIGIEMVETACNDA 521

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + NI  N + N K++    ++    +             +         VDPPR GL   
Sbjct: 522 KINIEQNGITNYKVICSKVEDVINEIVGP----------LAGQYKIIGVVDPPRPGLHAN 571

Query: 308 TVGMVQAYP---HILYISCNPDSLCRDLSILSTT---------HTIERLALFDQFPYTRH 355
            V  ++      H++Y++CNP ++  +L  L              + +    D FP T+H
Sbjct: 572 VVKAMRTCKGLDHLVYVACNPVAVTDNLLALCLPESKRRRAPAFHLTKYYGCDLFPQTKH 631

Query: 356 MECGVLLVRKPS 367
            E    L R P+
Sbjct: 632 FEGIFYLERYPN 643


>gi|294011713|ref|YP_003545173.1| TrmA family RNA methyltransferase [Sphingobium japonicum UT26S]
 gi|292675043|dbj|BAI96561.1| TrmA family RNA methyltransferase [Sphingobium japonicum UT26S]
          Length = 401

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/329 (21%), Positives = 124/329 (37%), Gaps = 28/329 (8%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
           S P   R RA       G  +     +  +   + +         + AL+  + +   L 
Sbjct: 99  SPPK-VRRRASLRAIRQGRKVVIGFAESGSHVLVDLTMCEILDPRLFALVAPLRSLCAL- 156

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
            +L  K        S +DQ +  L+    ++    + A+      H         G   +
Sbjct: 157 -VLPEK-RAAHVRMSLTDQGVDLLLEGVRIEGLAADEALLAFAQHHGLARLTIDEGEGPQ 214

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
           T+      +  E +TV+   +       +F Q        ++    AA    QG + +L+
Sbjct: 215 TR------WEPEPVTVSFGGVPVAFPPFAFLQVTPDGEAALVREAGAAMPA-QGAIADLF 267

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G F+L L +    V A E A+  V + +         N    RM++          R
Sbjct: 268 CGLGTFALALGQ-GRPVYAAEAARDLVLSLKSAA------NRAQRRMAADH--------R 312

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL- 335
           +  R         RF  I +DPPR+G  +  + +  +  P I YISCNP S  RD + L 
Sbjct: 313 DLFRRPLTPAEIDRFAGIVIDPPRAGAQEQVMQLAASRVPVIAYISCNPASFARDAAHLV 372

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  + +ER+    QF ++ H+E   +  R
Sbjct: 373 AGGYRLERVRPVGQFRWSTHVELVGIFRR 401


>gi|255025037|ref|ZP_05297023.1| hypothetical protein LmonocyFSL_18750 [Listeria monocytogenes FSL
           J1-208]
          Length = 160

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 19/176 (10%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLE 215
           +T +   ++ ++E+L      L +     +F Q N      + + V  A      + L++
Sbjct: 1   ETFLLXGKESIEEKLM----ELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVD 56

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            YCG G      A     V  ++I   S+E A+ N   N + NV      +++      +
Sbjct: 57  AYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVK 116

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLC 329
           E             +R   + VDPPRSG D   +  +       ++Y+SCNP +L 
Sbjct: 117 E------------GFRPDAVIVDPPRSGCDQGLIKSLLEVEAKQLVYVSCNPSTLA 160


>gi|89052577|ref|YP_508028.1| (Uracil-5)-methyltransferase [Jannaschia sp. CCS1]
 gi|88862126|gb|ABD53003.1| 23S rRNA m(5)U-1939 methyltransferase [Jannaschia sp. CCS1]
          Length = 419

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 127/353 (35%), Gaps = 34/353 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K + +   + A  +P     I  S     R RA                 +++   + 
Sbjct: 91  TWKENVITTALQAHDLPTPLRPIVTSARKS-RRRATLAGTRTKKGAMIGFHARKSGTIVP 149

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
                     +   +  +   ++L     A L     LT       VT    + LD    
Sbjct: 150 TRDCFLLEPALLETLPALERIVKLGASRSATLGLALTLTDTGIDLHVT--GAKPLDGP-- 205

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
                LR AL   +     +   ++        Y +    +   T        +F Q   
Sbjct: 206 -----LRAALPQVRGSFSRLTWGDEPV------YTETPPRLTLGTARVTPPPGAFLQATQ 254

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +   V  AT+G    + +L+CG G F+L LA+    V AVE A   ++A  +  A
Sbjct: 255 DGEAALQAAVAEATQGATH-IADLFCGIGTFTLPLAQ-AAPVHAVEAAPDLLDALDH--A 310

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +K +   +++     RR    + L        +F  I +DPPR+G +  T  + 
Sbjct: 311 TRFATGLKPITTEARDLY---RRPLLPDELA-------KFDAIVIDPPRAGAEAQTEQIA 360

Query: 313 QAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
           +A+ P I  +SCNP +  RD +IL+   + ++ +   DQF ++ H+E      
Sbjct: 361 KAHVPVIAAVSCNPVTFARDAAILTKAGYALDWVQPVDQFRWSPHVELAARFT 413


>gi|227495508|ref|ZP_03925824.1| methyltransferase [Actinomyces coleocanis DSM 15436]
 gi|226831055|gb|EEH63438.1| methyltransferase [Actinomyces coleocanis DSM 15436]
          Length = 433

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 135/377 (35%), Gaps = 73/377 (19%)

Query: 13  QLAEKVDRLRQMMLAFQVP-----------NLQIFRSEP------IHYRMRAEFHIWHDG 55
           Q   K   ++  +                  +++  +        +H R R EF +  +G
Sbjct: 104 QREWKAAVIQDQLRRIGGEAVVAAVTKAVGKIEVLPASADVSGDGLHSRTRVEFEVSANG 163

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                 M    + E + ++        I  L            LL    +Q  +   +  
Sbjct: 164 ---RLAMSKALSNELVELEDMPLAVEAILEL-----------GLLGDSKWQRLWRPGKRV 209

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +AI      R                   R         A+  ++    ++ D +++   
Sbjct: 210 RAIAPNGGGR-------------------RVVIGNQTFNASGRRV---ENFADWKVSYGD 247

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD-- 232
               +      F Q +      +++ VL   +   GD ++EL+ G G F+  L +     
Sbjct: 248 LETNFSVQSQGFWQAHKSAPQDLVQIVLDEAQVRPGDAVIELFSGAGLFTYFLGQAAGAE 307

Query: 233 -RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
            R++++E +  +VE AR+N+    V  ++++  +  K  ++A     E            
Sbjct: 308 GRLISIEGSLQAVEDARHNLRGLEVPRDLRVGNVDGKSMSRAWSDLGE------------ 355

Query: 291 RFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALF 347
           R + + +DPPR+G     + ++       ++ +SC+P +  RD+   L+  + ++ L   
Sbjct: 356 RPRVVVLDPPRAGAGAELIRVIGMSGPERVVLVSCDPAAAARDIKDFLAAGYDLQNLYAL 415

Query: 348 DQFPYTRHMECGVLLVR 364
           D FP T H+E   +  R
Sbjct: 416 DLFPQTHHVEMVTVFER 432


>gi|162455576|ref|YP_001617943.1| SAM-dependent methyltransferases [Sorangium cellulosum 'So ce 56']
 gi|161166158|emb|CAN97463.1| SAM-dependent methyltransferases [Sorangium cellulosum 'So ce 56']
          Length = 465

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 131/394 (33%), Gaps = 75/394 (19%)

Query: 11  EQQLAEKVDRLRQM------MLAFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDDLYHIMF 63
           E Q A     +RQ       +    +P +++  +  P+ YR RA      +  ++     
Sbjct: 101 EAQQAAHERIVRQAIARATSLAEADLPPIRVHPAPLPLGYRSRARLFARAERGEVRVGYR 160

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ--SDQAIVTL 121
             +T     +D  +     I  L  E+        +L   + + D L S   S + +V +
Sbjct: 161 APRTHAVAAVDRCVVLVDAIAPLAGEL------PGVLHGAVGEGDVLISLGASSRPVVEV 214

Query: 122 IYHRLLDDA-WRECAIR-----LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           ++   L  A W+    R        A        +     +     L  D          
Sbjct: 215 LWRGQLPPAVWQRLDERTARGGWAGARVTLDGAREAASFGDPRPAILGAD---------- 264

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATK---GIQGDLLELYCGNGNFSLVLARHF- 231
             L        F QP+      +                 +LEL+ G+G  S++LAR   
Sbjct: 265 -GLPLLLAPGGFGQPSEEGAAVLARRAAELAHLDSTRPPHVLELFAGSGTLSVLLARGAL 323

Query: 232 -------------------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
                                  AVE++  +V   R N+AA  +   K +   +      
Sbjct: 324 RPSPGAEPGGAVASGPPGPASFTAVELSSGAVACLRQNLAARGLAG-KAIEADA------ 376

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL-YISCNPDSLCRD 331
                      D      R   + +DPPRSG   A   +  +   ++ Y+SC+P +L RD
Sbjct: 377 -----------DQYPIPARTDVVVLDPPRSGAPGAARAIAASSARVVVYVSCDPATLARD 425

Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           L  IL     I  +   + FP T H+E  V L R
Sbjct: 426 LGEILRGGFEITDIEAVELFPQTSHIESIVRLSR 459


>gi|148927467|ref|ZP_01810970.1| (Uracil-5)-methyltransferase [candidate division TM7 genomosp.
           GTL1]
 gi|147887191|gb|EDK72658.1| (Uracil-5)-methyltransferase [candidate division TM7 genomosp.
           GTL1]
          Length = 318

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/309 (20%), Positives = 120/309 (38%), Gaps = 26/309 (8%)

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
             F +    ++ +        +IN    +++A +R   +    L  +    SQ  +    
Sbjct: 32  AFFRRGGHGKIPVTGTSLALPVINEAARKLLALLRSAEVAGRSLKTLLIRASQQGKVSAQ 91

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR--DYVDERLTVAGRTL 178
           +     +    ++ +    +AL     ++      +   +  +R        LT     +
Sbjct: 92  IYVKEKV--VAQQISRHALEALGLAGIELIYSDPHSPASVVSERLMSVGSGTLTDEILGI 149

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
            +      F Q N  +   M+   +         +++LY G G+  L +         VE
Sbjct: 150 PFHYATEGFFQINLPV-YEMVLRDMQIFVLADRPVIDLYSGVGSIGLTI--GGKNPTLVE 206

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+  +V   R N+ A    +  IV  SS+   + +                    TI VD
Sbjct: 207 ISGSAVAEMRRNLRALG-RHANIVHASSESALEYINS----------------NATIIVD 249

Query: 299 PPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
           PPR+GL +  +   +++A   I+Y+SCNP +  RD+ +LS T+ I     ++ FP T H+
Sbjct: 250 PPRAGLHEKVIQELLIKAPERIIYLSCNPVTQARDVMMLSETYGIREHIGYNFFPRTPHI 309

Query: 357 ECGVLLVRK 365
           E  V+L RK
Sbjct: 310 EHLVILDRK 318


>gi|90019775|ref|YP_525602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharophagus
           degradans 2-40]
 gi|89949375|gb|ABD79390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saccharophagus
           degradans 2-40]
          Length = 408

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 126/370 (34%), Gaps = 85/370 (22%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDL 58
                  +Y  QL  K  R+ + +     P+     +       YR RA+F      D  
Sbjct: 110 GCAWQSIEYSAQLQAKQTRVEKALANLCKPDAIAPILGAERTEGYRNRAQFKT----DGS 165

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
                   +   + ++  +                                + +  + A 
Sbjct: 166 KLGYVAPSSNNIVDVETCL--------------------------------VLTPHNAAT 193

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +  +  +L +  W+                I     A++ +       V+ERL       
Sbjct: 194 LANLRQQLPNSEWQPKRKE-----PWVTLNIDETHSADEVR-------VNERLP------ 235

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
                   F Q N+  N  M +W+    A   +    +EL+CG+GNF+ V+A      +A
Sbjct: 236 --------FMQANSSQNKLMQDWLAERLARVDLANPAIELFCGSGNFTEVIAAAGFPAVA 287

Query: 237 -VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VE+   ++ A +     N               +       E   L++      + KT+
Sbjct: 288 AVEVEGDALSALQAKALTN--------------VSVHGINLYEEGGLENALKTQPKAKTL 333

Query: 296 FVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
            +DPPR GL +    + ++     ILYISC+  +  RD++ L    + +  +   DQFP+
Sbjct: 334 VLDPPRDGLKERAALLKKSCKIRDILYISCDLATFTRDITDLCGAGYKLVAVQPVDQFPH 393

Query: 353 TRHMECGVLL 362
           T H+E    L
Sbjct: 394 TPHVEILAHL 403


>gi|184201062|ref|YP_001855269.1| putative methyltransferase [Kocuria rhizophila DC2201]
 gi|183581292|dbj|BAG29763.1| putative methyltransferase [Kocuria rhizophila DC2201]
          Length = 478

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 124/351 (35%), Gaps = 43/351 (12%)

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
            +R R    +  DG      M   ++ E + +      +  I  L    +     E    
Sbjct: 141 GWRTRLHLDVAADG---RAGMHPHRSDELVAVTDMPLATDAIRELAPWSLRLPGAE---- 193

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA--RKYQIQLIGRANKTK 159
               ++D     +    +  +  R      +     LR  L     ++ + +  R+   +
Sbjct: 194 ----RVDVAAPSNGLCALLHVSLRPDTSEPQID--ALRGELTQWGEEHGVSVTARSADHR 247

Query: 160 ICL---DRDYVDERLTV------AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                     V E L +        R L +R     F Q +      +   VL A +   
Sbjct: 248 RIATWAGEPGVCETLELPGLDGSGPRRLQWRVSPTGFWQIHREAPETLSRAVLEAARLEP 307

Query: 211 GD-LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           G+ + +LY G G F+ V A       RV AVE +  +   A +N+A     +V  VR   
Sbjct: 308 GETVWDLYSGAGLFTAVAADAVGERGRVFAVEGSPVTSADAAHNLA--GAPHVTGVRGDV 365

Query: 267 KEFTQAMRREREFNRLKDIDIHS----------YRFKTIFVDPPRSGLDDATVGMV--QA 314
                     R  +R +     +           R   + +DPPR+G     +  V    
Sbjct: 366 ARVLTGRGGARRGDRRRGGGWAASSRDARTAAPPRPDAVIMDPPRAGAAKEVLAAVDQAG 425

Query: 315 YPHILYISCNPDSLCRDLSILSTTHT-IERLALFDQFPYTRHMECGVLLVR 364
              I+Y++C+P +L RDL  L      IE ++ FD +P T H+E   LL R
Sbjct: 426 PRRIVYVACDPAALGRDLGRLRRRGWRIEDVSGFDLYPNTHHVEAVALLRR 476


>gi|254471699|ref|ZP_05085100.1| putative RNA methyltransferase [Pseudovibrio sp. JE062]
 gi|211958901|gb|EEA94100.1| putative RNA methyltransferase [Pseudovibrio sp. JE062]
          Length = 421

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/325 (19%), Positives = 118/325 (36%), Gaps = 29/325 (8%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R RA F     G  +       ++   + I+     +  I   +  +   +  E L R  
Sbjct: 120 RRRAVFAAVKAGHKVLFGYHTAKSNRLVDIEECPVIAPEIMKAVPGLRR-LAGEVLPRKG 178

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
             +    T+QS   +      +  D  + + +    +   AR              + +D
Sbjct: 179 ELKFTVTTTQSGLDVAITGLGKNKDKHYLQLSQGAVENDLAR--------------LTVD 224

Query: 164 RDYVDERLT--VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
            + + E     +             F Q        M + +    KG +  + +L+CG G
Sbjct: 225 GETIIEIRPPLLDMSGAAVPIPAGGFIQAALSAENTMGDLLAEGLKGCK-RVADLFCGAG 283

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             +  + + F  V AVE    S++          +   K ++  + E     RR      
Sbjct: 284 TLTFKIGQ-FANVHAVEGEASSLK-----ALDQGLRRAKGLKKVTTERRDLFRRPIVA-- 335

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLS-ILSTTH 339
            K++D     +  +  DPPR+G       + ++    I+ +SC+P S  RD+  +L   +
Sbjct: 336 -KELDNFGKGYDGVVFDPPRAGALAQAQELAKSPVKKIVAVSCSPASFVRDMRELLDGGY 394

Query: 340 TIERLALFDQFPYTRHMECGVLLVR 364
            I+R+   DQF Y+ H+E   LL R
Sbjct: 395 EIKRVVPIDQFLYSPHVEVVALLER 419


>gi|297182836|gb|ADI18988.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [uncultured delta
           proteobacterium HF0010_10I05]
          Length = 415

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 135/364 (37%), Gaps = 51/364 (14%)

Query: 16  EKVDRLRQMMLAFQV---PNLQIFRSEP-IHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
            K   +   +    V    +LQ+    P + YR R EFH     + L+  + +  ++  +
Sbjct: 88  WKRQIVLDTLQRQTVLCHNDLQVSEEGPRLGYRNRLEFHFTQVKNRLHLALHEPASQNPI 147

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
             +    G   +     E++  +    L   ++ ++    +++ Q +  L          
Sbjct: 148 PAETCQLGLPTLQRASQELILLLDDAQLRPKEMGRLVLRGNRAGQVVALL---------- 197

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS----- 186
            +     +  L + +     +       I     +  E L+   ++ ++  + N+     
Sbjct: 198 -QLNAAAKQRLTSHQGYWPKLDF---QFIAYSESFPKEALS---QSELFESVANARIYFG 250

Query: 187 ---FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
              F Q N      ++  V    K  + ++L+LY G G  SL  A      + VE    +
Sbjct: 251 GLGFFQINPFCLELLVPVVGEWIK--EEEVLDLYGGVGTLSLPHAEQIQSCVIVEENPDA 308

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              A+ N        +   +++  +  QA++                  +T+ ++PPR+G
Sbjct: 309 THFAQRNTKE-----IPHFQITPSKVQQALK-------------QIGGQQTVLLNPPRAG 350

Query: 304 LDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           + +     +       ++Y+SCN  +  RDL  L   + ++    F+ FP T H+E   +
Sbjct: 351 IANQVRKQLLKVKPKRLIYLSCNVSTCARDLKGLQDYYELKWQQAFNFFPATPHIELLTI 410

Query: 362 LVRK 365
           L RK
Sbjct: 411 LERK 414


>gi|262196875|ref|YP_003268084.1| deoxyribonuclease/rho motif-related TRAM [Haliangium ochraceum DSM
           14365]
 gi|262080222|gb|ACY16191.1| deoxyribonuclease/rho motif-related TRAM [Haliangium ochraceum DSM
           14365]
          Length = 491

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 139/387 (35%), Gaps = 54/387 (13%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWH--DGDDLYHIMFDQ 65
            Q + K +   + +       +++        P H+R RA  H +     +      F  
Sbjct: 127 AQASAKDELCERALRRQVEAGMELRPVRSEVPPYHWRRRARLHWYRPRKSEAATIGFFGP 186

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++     ID  +  +  + A +  +   +   P L  +   ++ L        +++    
Sbjct: 187 RSHRVSPIDGCVQLAPPLLAALSVIRERLA--PTL-GRTGSMELLAGHGGDVHLSIRGRC 243

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LD A           +       Q  G   +      + +++      GR        +
Sbjct: 244 DLDAAADLVGQGPVVGVRVEDQAGQP-GARRRPPARFGKPHIELEAGFFGR-------AD 295

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-------------------LLELYCGNGNFSLV 226
            F Q +A  N  +L+ V  A + +                      +LEL+ G GN +  
Sbjct: 296 VFAQSSADGNRALLDEVENALRDVAQSQSQSQSQSAEESAGGGGLAILELHAGAGNLTRA 355

Query: 227 LARHFDRVLAVEIAKPS----VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           LA H  R++AVE  KP     V     +  A  V     V     +           ++L
Sbjct: 356 LATHAARLVAVERRKPPWTLPVGLEAASADAAAVAARAFVAGDVADVC---------DKL 406

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILST-THT 340
            D D    RF  I +DPPR+G  +    +    P +I+Y+SCNP +L RDL +LS   + 
Sbjct: 407 SDADA---RFDVIVLDPPRTGAREVLEPLSALAPGYIIYVSCNPATLARDLDVLSEHGYA 463

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
                  D  P T H+E   LL R+P+
Sbjct: 464 ARWAQPLDLMPQTSHIEVVTLLERRPA 490


>gi|158523083|ref|YP_001530953.1| (Uracil-5)-methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158511909|gb|ABW68876.1| (Uracil-5)-methyltransferase [Desulfococcus oleovorans Hxd3]
          Length = 371

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 134/368 (36%), Gaps = 46/368 (12%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           LAEK+   ++ +  +Q P L    + P      YR +      HDG      +  ++   
Sbjct: 32  LAEKLGFAQKTLAPWQ-PALAAPETAPEQRQWEYRNKVCLSAIHDGRVWRIGL--KRRDA 88

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            + +      S  +   M      +   P      F + +    + Q  + +   R+ D 
Sbjct: 89  VIAVGRCRIHSAGVRKAMALFAGILPPAPS-----FPLVFYVQSNAQITLVIKSARIPDM 143

Query: 130 AWRECAIRLRDA--------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
            W    ++ R          L         +   N  ++   R       ++  R L+Y 
Sbjct: 144 EWLTDDVKNRLQNMGIEGLWLCLHPSAGHRVFAKNGWRLVWGRP-----RSMDTRGLVY- 197

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIA 240
               +F QP   +    L+        + GD +++LYCG G       +    V  VE++
Sbjct: 198 -GPTTFGQPIVELAEASLDRAEHFLNPVSGDQVMDLYCGIGAGLARWKKKTAPVTGVELS 256

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             SV  AR N                    + M R R       ++  + R   ++ +PP
Sbjct: 257 GESVACARQNA-------------PGATVLRGMCRLRLPQLTAALEPKAPRC-LVYANPP 302

Query: 301 RSGLDDATVGMVQ---AYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHM 356
           R+G++      +        +  +SCN  +L RDL++L    + IERL  FD FP TRH+
Sbjct: 303 RTGMEPEVTQWLADTCRPEKMACLSCNAVTLKRDLTLLENKGYKIERLIPFDFFPNTRHL 362

Query: 357 ECGVLLVR 364
           E   LL R
Sbjct: 363 EILALLHR 370


>gi|119385304|ref|YP_916360.1| (Uracil-5)-methyltransferase [Paracoccus denitrificans PD1222]
 gi|119375071|gb|ABL70664.1| 23S rRNA m(5)U-1939 methyltransferase [Paracoccus denitrificans
           PD1222]
          Length = 406

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 128/358 (35%), Gaps = 40/358 (11%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           A KV  + + +      VP   +  S P   R RA                 + ++  + 
Sbjct: 82  AWKVGVVTEALRAQGLSVPVAGVHVSPPRS-RRRAVLSGRRTKKGALLGFHARASEVIVD 140

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I         I + +  +   +        +L      T       VT    + ++ A  
Sbjct: 141 IADCHVLRPDIQSALPLLRRLVVAGASRAGELSLTVTETPAGLDVAVT--GGKPMEPALF 198

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER---LTVAGRTLIYRQIENSFTQ 189
           +    L D               +  ++  D   +  R   L +    ++      SF Q
Sbjct: 199 QTLAALADQ-------------GDLARLSWDGQAITRRPPALAMGRARVV--PPPGSFLQ 243

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
             A     +L  V    +G  G +L+L+ G G FSL LA     V AVE     ++A   
Sbjct: 244 ATAEGEAALLAAVRGMVRG-AGRMLDLFAGCGTFSLPLAETA-EVHAVEGLAAPLQA--L 299

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           + AA     ++ +     E     RR    + L         +  I +DPPR+G +    
Sbjct: 300 DAAARQAQGLRRIT---TEIRDLARRPLMPDELA--------YDAIVIDPPRAGAEAQAR 348

Query: 310 GMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
            + QA  P + ++SC+P +  RD  IL+   + + +L + DQF ++ H+E      R+
Sbjct: 349 EIAQAQVPTLAWVSCDPVTFARDARILAENGYRLCQLFVVDQFRWSPHVETVAEFRRR 406


>gi|218294965|ref|ZP_03495819.1| (Uracil-5)-methyltransferase [Thermus aquaticus Y51MC23]
 gi|218244873|gb|EED11397.1| (Uracil-5)-methyltransferase [Thermus aquaticus Y51MC23]
          Length = 402

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 141/366 (38%), Gaps = 49/366 (13%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQI--FRSEP--IHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE QL  K   + + +         +   R  P  + YR  A++     G   Y +    
Sbjct: 70  YEAQLPLKEGLVAEALERIAKVPFALSPIRPSPRALGYRTAAQYARHPLGGLAYRL---P 126

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRL---EPLLRAKLFQIDYLTSQSDQAIVTLI 122
           +++  +R++     +  + A    ++ T  L   E  LR  L           + ++ LI
Sbjct: 127 ESQALVRVEEDPLLAEPL-AWAFALLKTWPLPVEEIALRGSL--------LEGKVLLGLI 177

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN---KTKICLDRDYVDERLTVAGRTLI 179
                 +A +  A  L     A     +   +     + +        +  L  A   + 
Sbjct: 178 GGSP--EALKRPARALVQEGFAGVVWAEPSPKGRFRGRVRPLQG----ETTLLEAFGPIT 231

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
                 SF Q N      +LE      +G +   LE+Y G+G  SL+LA  F  V+AVEI
Sbjct: 232 ATVSLESFAQVNPLAAGLLLEEARDLVQGGE-RALEVYAGSGLLSLLLAPRFQEVVAVEI 290

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K +V     + A   V NV+  R  ++E        R F R          F  + +DP
Sbjct: 291 SKEAVRRGERDKARLRVENVRFHRGDARE-------ARRFGR----------FDLVVLDP 333

Query: 300 PRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           PR+GL +     +       +LYI+C+P +  RD+  L    + +     +D FP+T H+
Sbjct: 334 PRAGLSEEVRAYLLESRPKEVLYIACDPATWARDVGELVRGGYELAFARPYDFFPFTHHV 393

Query: 357 ECGVLL 362
           E   LL
Sbjct: 394 EVLSLL 399


>gi|323136858|ref|ZP_08071939.1| putative RNA methyltransferase [Methylocystis sp. ATCC 49242]
 gi|322398175|gb|EFY00696.1| putative RNA methyltransferase [Methylocystis sp. ATCC 49242]
          Length = 420

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 127/327 (38%), Gaps = 31/327 (9%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R RA FH   D           ++ E + I+      LL   L   + A   L  +L A+
Sbjct: 112 RRRATFHARMDRGRARVGFMAARSHEIVEIEACP---LLAPELAGALPAARALAQILAAR 168

Query: 104 LFQID-YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              +D + T+  D   V L     L++           AL A   +  L   +N  ++  
Sbjct: 169 GKPLDLWFTATLDGMDVDLRGAGPLEEHE-------TGALIAAAERHDLARLSNHGRLVT 221

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            R      +  A   L      ++F Q        +   V+ A  G +  + +L+CG G 
Sbjct: 222 LRRPPMIAVGAARVPL----PPSAFLQATQAGEAAIAARVVEAATGAR-RVADLFCGVGA 276

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+L LA +  RV A + A  +VEA      A     ++ +  + ++        +E    
Sbjct: 277 FALRLAENA-RVAAYDSAADAVEAMM--AGARGATGLRPLEGAVRDLFTRPLTGQEL--- 330

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLS-ILSTTHT 340
                    F  +  DPPR+G       + Q+  + ++ +SC+  S  RD S +LS  ++
Sbjct: 331 -------ASFDVVVFDPPRAGAMAQAKELAQSKVNTVIAVSCSAQSFARDASILLSGGYS 383

Query: 341 IERLALFDQFPYTRHMECGVLLVRKPS 367
              L   DQF ++ H+E   +  R+ +
Sbjct: 384 ARNLTPIDQFRFSPHVEIVAVFSRETA 410


>gi|170740613|ref|YP_001769268.1| (Uracil-5)-methyltransferase [Methylobacterium sp. 4-46]
 gi|168194887|gb|ACA16834.1| (Uracil-5)-methyltransferase [Methylobacterium sp. 4-46]
          Length = 420

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 129/361 (35%), Gaps = 34/361 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF 63
           L  + Y    A K D +   +    +   +   R      R RA FH+      L     
Sbjct: 83  LAPEPYA---AWKRDLVATALARAGIAATVAPLRDAHGAGRRRATFHVRRVEGALEAGFM 139

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
             ++   + ID+       ++       A     PL   K   +    +++    V L  
Sbjct: 140 AARSHALVAIDHCPITEPALHPAPDA--ARALARPLGGGKPLDVQATVTEAGLD-VDLRG 196

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           H   D   R+  + L   L   +  +         ++ ++R      L V    L+    
Sbjct: 197 HGPADGRARQALVALAGDLDLARLSLH-------GEVLVERR--PPLLRVGRAALV--PP 245

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
              F Q        +L  ++ A  G    + +L+CG+G FSL LA     V AVE    +
Sbjct: 246 PGGFLQA-TRAGEALLGDLVVAGVGDAKRVADLFCGSGAFSLRLAE-ARGVHAVEGDAAA 303

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + A     A      ++ V    ++  +      E +R          F  +  DPPR+G
Sbjct: 304 LAALDR--AVRGAPGLRAVTTERRDLFRRPLLAPELDR----------FDAVVFDPPRAG 351

Query: 304 LDDATVGMV-QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
            +     +     P ++ +SC+  +  RD ++L +  + ++ +   DQF ++ H+E   +
Sbjct: 352 AEAQAARLAGSKVPVVVGVSCDAGTFARDAALLIAGGYRLDEVVPLDQFRHSPHVELVGV 411

Query: 362 L 362
            
Sbjct: 412 F 412


>gi|332185328|ref|ZP_08387077.1| hypothetical protein SUS17_262 [Sphingomonas sp. S17]
 gi|332015052|gb|EGI57108.1| hypothetical protein SUS17_262 [Sphingomonas sp. S17]
          Length = 398

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 71/367 (19%), Positives = 127/367 (34%), Gaps = 36/367 (9%)

Query: 5   LLIDQYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           L  + Y        DR+   +       P      S P   R RA  H    G  +    
Sbjct: 62  LDDESYAG---FVTDRIASALDAQGLTAPLRPAHLSPPRS-RRRATLHAETKGGRVLIGF 117

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            ++++   + I      +  + AL+  +   ++     R     +  L  Q    +VT  
Sbjct: 118 SEEKSHAIVDIVECHILAPELFALVAPLRGLLQRLGFKRRGDVHL-TLADQGADILVTSF 176

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
               L+ A  E  I   +     ++ +   G   +T+      +  E +T+    +    
Sbjct: 177 SPDGLEAA--EAIIGFCERHGVARFAVDD-GMGPETR------WEPEPVTITLGGVGVPL 227

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              +F Q        ++  V  A    +    +L+ G G F+L L     +V A E A+ 
Sbjct: 228 PPGAFLQATRDGEAALVAAVTEAVGNPRTTA-DLFAGLGTFALAL---PGKVYAAEGARD 283

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++           +         +          R+  R         RF  I +DPPR+
Sbjct: 284 AI---------LSLKGAANACGRA-----VFAEHRDLYRRPLTKAELDRFDAIVLDPPRA 329

Query: 303 GLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G  D    +   A   + Y+SCNP S  RD  ++     ++E +    QF ++ H+E   
Sbjct: 330 GARDQAEALASAAVGAVAYVSCNPSSFARDARMMVDQGWSLEWVQPVGQFRWSTHVELAA 389

Query: 361 LLVRKPS 367
             VR+PS
Sbjct: 390 RFVRQPS 396


>gi|103486680|ref|YP_616241.1| (Uracil-5)-methyltransferase [Sphingopyxis alaskensis RB2256]
 gi|98976757|gb|ABF52908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sphingopyxis
           alaskensis RB2256]
          Length = 399

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 72/352 (20%), Positives = 130/352 (36%), Gaps = 31/352 (8%)

Query: 18  VDRLRQMMLAFQVPNLQIFR---SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            DR+   +    VP  +I     S P H R RA       G  +       Q+ + + + 
Sbjct: 74  RDRVIGGLEGQDVPFGEILPALLSAP-HSRRRAALTALRTGRQVAIGFNAAQSNQIVDMR 132

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
                +  + AL+  +   + +    R  +     L  Q  + I+  +    LD A    
Sbjct: 133 MCPLLAPELFALVAPVRELLAMIAQPRRPVKVKLQLLDQGVELILEGVKAEGLDAAM--- 189

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
              L+D   A       + + +  +I    D    R TV    +       +F QP A  
Sbjct: 190 --ALQDFAGAHSLARFAVDQGDGLEILWQPD----RPTVRFGDIAVEVPPFAFLQPTAAG 243

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +++ V  A  G    + +L+ G G F+L + +   +V A E A+             
Sbjct: 244 QAALVDAVARAI-GDASTVADLFAGVGTFALSV-QAGRKVYAAEGARD------------ 289

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 +   +++         R+  R   +     RF  I +DPPR+G ++    +  +
Sbjct: 290 --AIAALAGAANRARALVTTEHRDLFRRPLVPTELNRFGAIILDPPRAGAEEQVKQLAAS 347

Query: 315 YPHIL-YISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
              ++ Y+SCNP S  RD  IL    +T++ +    QF ++ H+E      R
Sbjct: 348 AAAVIAYVSCNPASFARDAKILVEGGYTLDWVQPVGQFRWSTHVELAARFAR 399


>gi|326387662|ref|ZP_08209268.1| (Uracil-5)-methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207708|gb|EGD58519.1| (Uracil-5)-methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 404

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/332 (19%), Positives = 116/332 (34%), Gaps = 30/332 (9%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
           S P   R RA  H    G  +     +Q + + + +      +  + AL+  +       
Sbjct: 97  SPPSS-RRRASLHAQAIGRRVVIGFREQGSHKIVDLKECAVLAPALFALVAPLRRLFEAR 155

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
              +     +D   + +DQ +V  +   +      E    L D                 
Sbjct: 156 ADRK---LSVDIELALADQGVVVGLSGYV--AEGLEQTEALLDFARDNGLARLTTDAGYG 210

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
                + + V   L      L       +F Q  +     ++        G+ G + +L+
Sbjct: 211 PDTVWEPEPVTVTLGGTPVAL----PPGAFLQATSDGEAALVGAAREWLDGV-GVVADLF 265

Query: 218 CGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
            G G F+  LA       +VLAVE A+ +  A +     N     + V    ++  +   
Sbjct: 266 SGLGTFAFGLAGSAGAAPKVLAVEAARDTHLACQSAARMNG----RSVHALHRDLFRNPL 321

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLS 333
           R  E +R          F  + +DPPR+G  +    +       ++Y+SCNP S  RD +
Sbjct: 322 RTEELDR----------FGGVVLDPPRAGAREQVGQIAASKVARVVYVSCNPASWARDAA 371

Query: 334 IL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            L    + +  L    QF ++ H+E   L VR
Sbjct: 372 QLIEGGYRLAALRAVGQFRWSTHVELASLFVR 403


>gi|114769865|ref|ZP_01447475.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [alpha proteobacterium
           HTCC2255]
 gi|114549570|gb|EAU52452.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [alpha proteobacterium
           HTCC2255]
          Length = 407

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 120/355 (33%), Gaps = 34/355 (9%)

Query: 15  AEKVDRLRQMMLAFQV-PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
             K+ + +  +    + P  +   +     R RA F               + +   + I
Sbjct: 82  DWKIRKTQDALSQVNLHPEFRPIINSKAGSRRRATFAAKRTKKGALVGFHGRASDVIIEI 141

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                   ++ + M        L    +A L     ++  S            +D+  + 
Sbjct: 142 SECPISDPILLSGMPAFSQFAILGSSRKAVLRISATVSGNSLDV--------KIDNGKKL 193

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPN 191
            A  +           Q+  +    ++  + D + +    + +  +   I    +F Q  
Sbjct: 194 SATEISKFA-------QICNQFKILRLMWNDDVIAQSNPPSQKMGLADVIPPSGAFLQAT 246

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +++ VL    G    +++L+ G G F+L ++     V A+E     +       
Sbjct: 247 KSGEAALIKTVLE-IIGPSKRVVDLFAGCGTFALPISSKA-TVHALEGDVNMIA-----A 299

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             +       +     E     RR    +  K ID        I +DPPR+G     V +
Sbjct: 300 LDSGWRAAGGLHDIKSETRDLFRRPLMPDEFKKIDA-------IVIDPPRAGAVSQVVEI 352

Query: 312 VQAY-PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
            +A    I ++SCNP +  RD SIL    + ++ + + DQF +  H+E      +
Sbjct: 353 AKANVGRIAFVSCNPATFARDASILCNNGYNLDWVQIIDQFLWNPHIELVAQFTK 407


>gi|281357982|ref|ZP_06244467.1| deoxyribonuclease/rho motif-related TRAM [Victivallis vadensis ATCC
           BAA-548]
 gi|281315640|gb|EFA99668.1| deoxyribonuclease/rho motif-related TRAM [Victivallis vadensis ATCC
           BAA-548]
          Length = 399

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/364 (20%), Positives = 118/364 (32%), Gaps = 62/364 (17%)

Query: 10  YEQQLAEKV--DRLRQMMLAFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           YE +L      D+L Q  L      L+  +    P+ YR +   H+   G          
Sbjct: 89  YETELKAAQLADQLAQAGLEPAPGVLESPVAPEPPLGYRNKIVLHVHKVGGRTMLGYVMG 148

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                  I+        INA + E+         L   +      T+             
Sbjct: 149 DNTTVTDIEACPLAHPEINAKLAELRGDKSFLHSLHEGMDVTFRRTAAGGATY------- 201

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
                WR    R                            ++ E L     +        
Sbjct: 202 -----WRNQPARNAT-------------------------WLKEELPFGRLS----VPCG 227

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFS-LVLARHFDRVLAVEIAKPS 243
           SF Q NA     + + V A     +    ++LY G G FS + L      VLAVE  + +
Sbjct: 228 SFFQVNAAGAAALADEVAALIAARKPARFIDLYAGVGFFSAVALHAGVREVLAVESDEAA 287

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
             AAR+N+      N +++   + E  ++++     + L            + VDPPR G
Sbjct: 288 AAAARFNLKNFGAENPEVIAGDAAEALKSLKDAPASDAL------------LTVDPPRGG 335

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGV 360
           L       +        +YISCNP +  RD   L+    T+ +L L + FP T H E   
Sbjct: 336 LTLKAAMALTGSTLDSFIYISCNPATWARDARRLAKGGFTLNKLRLVNMFPRTEHFELFS 395

Query: 361 LLVR 364
              R
Sbjct: 396 FWTR 399


>gi|329114669|ref|ZP_08243428.1| Putative RNA methyltransferase [Acetobacter pomorum DM001]
 gi|326696149|gb|EGE47831.1| Putative RNA methyltransferase [Acetobacter pomorum DM001]
          Length = 432

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 139/375 (37%), Gaps = 34/375 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE---PIHYRMRAEFHIWHDGDDL 58
             TL   +    L  K+  ++  +      NL  F +E   P   R RA+  +    D +
Sbjct: 74  GCTLQHVKPAAILQWKMATVQHALQKAGFNNLPAFSAEQVQPYS-RRRADLAVRRQPDSI 132

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-LEPLLRAKLFQIDYLTSQSDQA 117
              +  + +     +   +     I A +    AT+R L  + R     I+ L S  D  
Sbjct: 133 IIGLHARNSHAVTDLTTCVVLHPDILAALPAFRATLRSLNAIRREANLHINLLDSGLD-- 190

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
            V L     L    R    +L       +   QLI    + ++      V + +     T
Sbjct: 191 -VLLQTDGPLTAPDRVRLAQLATEQRIPRISWQLIKDTGQPEVAAQSGSVVQTIASHQIT 249

Query: 178 LIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                   +F Q       ++ + V   L A    +  + ELY G G  +  LA H  RV
Sbjct: 250 ----PPPGTFLQATDESEKYIQDAVVKSLPAKLNRRDIITELYAGCGTLTFPLAEHA-RV 304

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A E   P++EA +                 +   T+     R+ N    +         
Sbjct: 305 NAYEGYAPALEALK----------------KATSGTRISTFCRDLNHQPVLAKEIAASAV 348

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
           + +DPP +G       + Q  P HI+Y+SCNP +L +D S+L+   +T+E + + DQF +
Sbjct: 349 VVLDPPHAGAKLQMRQIAQGLPTHIIYVSCNPAALAQDASLLAKAGYTVENVTVVDQFLW 408

Query: 353 TRHMECGVLLVRKPS 367
           +  +E      R+ S
Sbjct: 409 SAEIEAICSFKRESS 423


>gi|254788168|ref|YP_003075597.1| RNA methyltransferase, TrmA family [Teredinibacter turnerae T7901]
 gi|237687433|gb|ACR14697.1| RNA methyltransferase, TrmA family [Teredinibacter turnerae T7901]
          Length = 393

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 117/364 (32%), Gaps = 87/364 (23%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPN--LQIFRSEP-IHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Y+ QLA K  R+   +      +  L I+ S     YR RA+F      D          
Sbjct: 106 YDAQLAAKQTRVTAELARLGEADKVLPIWPSPQIFGYRNRAQFKT----DGREIGYVSAA 161

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           +     + +                                                   
Sbjct: 162 SNTLAPVQHCPV------------------------------------------------ 173

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           L +  +     LR  L  R +Q           I  D     E++ V  R L ++     
Sbjct: 174 LSEPNQHTLQTLRAQLPNRAWQPARRSAWRTLDI--DESIAAEQVCVDQR-LPFK----- 225

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVE 245
             Q N+  N  M  W+           +EL+CG+GN + VL      ++ AVE+   ++ 
Sbjct: 226 --QGNSAQNTRMRAWLAERIAPGTQQAVELFCGSGNLTEVLCDAGVAKISAVEVVDEAIA 283

Query: 246 AARYNIAANHVNNVKIVRMS--SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           A R  +    +  V+ +     + +   ++ R  +   L            + +DPPR G
Sbjct: 284 ALRAKV----LAGVEPIVCDLFADDGLASVARALKTAEL------------LVLDPPREG 327

Query: 304 LDDATVGMVQAY--PHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGV 360
                    +      +L +SC+  +  RDLS  L     +  +   DQFP+T H+E   
Sbjct: 328 WKSRAAAWPKNCQVRQVLSVSCDLATFTRDLSFFLDQGFRLVEVQPLDQFPHTPHIELLA 387

Query: 361 LLVR 364
            L +
Sbjct: 388 HLEK 391


>gi|315186207|gb|EFU19969.1| (Uracil-5)-methyltransferase [Spirochaeta thermophila DSM 6578]
          Length = 367

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/370 (20%), Positives = 119/370 (32%), Gaps = 85/370 (22%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
              L    Y+ Q+  K   L + +      +VP  +++      YR R +  +  +G   
Sbjct: 76  GCALQHVAYDHQVEVKRGWLEEHLRRAGVGEVPECEVYAGSAYGYRSRVQVQV--EGGRP 133

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
             +  D  T   + ++                                            
Sbjct: 134 GFLGRDL-TH--VAVEGCAVA--------------------------------------- 151

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
                H     A+R      R  +    ++ +L G               E   V     
Sbjct: 152 -----HPACGPAFRREYRIERGKVPFVGWEGRLWGGEE-----------PEEFCVEVGGY 195

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
           ++    + F Q N      +L W+      G  G+  +LY G G FS VLAR   R   V
Sbjct: 196 VFHGRTDLFFQSNLFGLERLLGWLEGVVPAGDGGEAWDLYAGVGVFSQVLARRGWRPRLV 255

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E A  S+  A   +          V +S++ F +  R                    +  
Sbjct: 256 ESAVASLGYAEQALG----GGAAYVGVSAERFLRGYR--------------GVVPGMVVA 297

Query: 298 DPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTR 354
           DPPR GL          Q  P ++YISCN  +  RD++ L    + + RLA FD +P T 
Sbjct: 298 DPPRGGLSRTVRAFFEGQGVPLLVYISCNTATFARDVAHLVWAGYRLTRLAFFDFYPQTP 357

Query: 355 HMECGVLLVR 364
           HME   +L +
Sbjct: 358 HMEVAGVLSK 367


>gi|254419097|ref|ZP_05032821.1| tRNA (Uracil-5-)-methyltransferase superfamily [Brevundimonas sp.
           BAL3]
 gi|196185274|gb|EDX80250.1| tRNA (Uracil-5-)-methyltransferase superfamily [Brevundimonas sp.
           BAL3]
          Length = 414

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 127/362 (35%), Gaps = 39/362 (10%)

Query: 14  LAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-DQQTKERM 71
           L  K +++R  +    +   ++   + P   R RA  H     D    + F  +++   +
Sbjct: 81  LEWKREQVRLALAREGIETEVEATVASPAGTRRRAALHARRTQDGRVVLGFKARRSWRLV 140

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL--- 126
            +         I   +  +  +A   LE    A    + +  S      VT +  R    
Sbjct: 141 EVRECPVADPRIIRAIPALTEVAAAFLEHPKSAPTLHVTWTLS-GLDVDVTGVERRSGGG 199

Query: 127 --LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
              D   R  A   R  L         +  A + KI      V                 
Sbjct: 200 LSADAQMRAIAAAHRADLARLSLAGDTLVMARQPKIGFGPATVP-------------LPA 246

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             F Q        M+E  +AA KG +  + +L+CG G F+  LA     V+A + +K  +
Sbjct: 247 GGFLQAVPQAEAAMVERAVAAVKGAR-KIADLFCGAGTFTFPLAT-VAPVIAADASKAGI 304

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E          V + K ++  + E     RR      LK           I  DPPR+G 
Sbjct: 305 E-----ALKAGVGSAKGMKAITAEARDLFRRPLTPYDLK-------GCDAIVFDPPRAGA 352

Query: 305 DDATVGMV-QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
            D T  +       ++ +SCNP +  RD  +L      +ER+   DQF ++ H+E   + 
Sbjct: 353 IDQTAQIAGTKAGVVVGVSCNPQTFARDARVLIDAGFRLERVTPVDQFLWSAHVELVSVF 412

Query: 363 VR 364
            R
Sbjct: 413 KR 414


>gi|126724609|ref|ZP_01740452.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Rhodobacterales
           bacterium HTCC2150]
 gi|126705773|gb|EBA04863.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Rhodobacterales
           bacterium HTCC2150]
          Length = 406

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 129/375 (34%), Gaps = 47/375 (12%)

Query: 2   SGTLLIDQYEQQLAE-KVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
            G  +    E +LAE K+D +R  +       P   I  S     R RA F         
Sbjct: 64  GGCSMQHLREDKLAEWKLDVVRNALTAREITAPISGIHTSPASS-RRRASFSGKRTKSGA 122

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
                 + +   + +         + A +  +   +      +A++  +  LT       
Sbjct: 123 MVGFHQRASDVLIEVPNCKLLHPDLMASLPILQDLVITGASRKAEISLVVTLTEGGLDVA 182

Query: 119 VTL-------IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
           V+        +   L+  A +    RL         +   + +  K K+ L         
Sbjct: 183 VSRAKDMDRGLLETLVAKAEQHDLARLTWNDEPVATRRPPVVQFGKGKVAL--------- 233

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
                         +F Q      + +L  V       +  +++L+ G G FSL LA   
Sbjct: 234 -----------PPGAFLQATEDGEMALLASVKDVVADAK-TVIDLFAGCGTFSLPLAEDA 281

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V AVE     +EA            +K +   +++  +      EF ++         
Sbjct: 282 M-VRAVEGEGDMLEALDK--GWRKAKGLKTIVSETRDLYRRPLLPDEFKKI--------- 329

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
              + +DPPR+G +     + +A    I  +SCNP +  RD + L +  +T++ + + DQ
Sbjct: 330 -DAVVLDPPRAGAEAQVAELAKADVAKIAMVSCNPVTFARDAATLIAGGYTMQWVDVVDQ 388

Query: 350 FPYTRHMECGVLLVR 364
           F ++ H+E      R
Sbjct: 389 FRWSSHIELAAAFTR 403


>gi|323452481|gb|EGB08355.1| hypothetical protein AURANDRAFT_64214 [Aureococcus anophagefferens]
          Length = 453

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 124/375 (33%), Gaps = 58/375 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
              L     + Q   K   LR  +                      YR +   H+   G 
Sbjct: 125 GCQLQHLTLDAQRRWKRVFLRDALERVGGLRGVAVEATRGGDRGYGYRRKLTPHVTARGA 184

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
             +  +  +     + +         +N  +  + A  R   L RA  +           
Sbjct: 185 LGFQRVGGRG---LVDVAACAIADDAVNERLRALAAEPRDRLLARAAAYAPARRARAKKA 241

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
                                L    HA    +                  DE +    R
Sbjct: 242 P----------------AGGTLLLRGHAAGVAVDP----------------DEVVEQEVR 269

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
            L +    + F Q N      +++ V+A A +     LL+ YCG G F+L  A  FD V 
Sbjct: 270 GLRFAHKASEFWQNNDDALPALVDHVVAEARRSGATKLLDCYCGGGLFALAAAADFDAVR 329

Query: 236 AVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            VE++  +V AA  N A N +  V   V   ++                D    +     
Sbjct: 330 GVEVSAANVAAATRNAARNGLGGVATFVVGRAERLF------------ADAAEFAGGDTV 377

Query: 295 IFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTT--HTIERLALFDQF 350
           + +DPPR+G   A +  + A+    ++Y+SC+P +L RD + L     + +     FD F
Sbjct: 378 VVMDPPRAGASAAFLDQLLAFAPVRVVYVSCDPATLARDAAALVAGGDYAVASAVPFDLF 437

Query: 351 PYTRHMECGVLLVRK 365
           P TRH+E  V+  R+
Sbjct: 438 PMTRHVEAVVVFDRR 452


>gi|156098873|ref|XP_001615452.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148804326|gb|EDL45725.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 836

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 95/219 (43%), Gaps = 26/219 (11%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLE 215
           +     +Y++E +        +    + F Q N      + + V+   +  +     + +
Sbjct: 630 EHLWGVEYLEEIILNN----RFLLTPSCFFQVNHSSCEILYKRVIDYIQISEKKQNYIFD 685

Query: 216 LYCGNGNFSLVLARHFD----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           L CG G  S+  A         ++ ++I + S+  A  N   N + N K ++   +E   
Sbjct: 686 LCCGTGTISICAANELKGEDVHIVGIDICEDSIMCANKNAEMNKIKNYKFLQGRVEELFS 745

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSL 328
                   N +K++   +     + VDPPR GL ++ + ++   Q    I+Y+SCNP +L
Sbjct: 746 --------NEIKNVSEKNANV-IVIVDPPRCGLANSVLNILSSNQLIGQIIYVSCNPITL 796

Query: 329 CRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +++ +   +    I+ L   D FP+T H+EC   +V+
Sbjct: 797 ISNVTHVLFQNENLKIKNLVFVDMFPHTFHLECITNMVK 835


>gi|163841132|ref|YP_001625537.1| TRAM domain-containing protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162954608|gb|ABY24123.1| tRNA (Uracil-5-) -methyltransferase [Renibacterium salmoninarum
           ATCC 33209]
          Length = 438

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 137/370 (37%), Gaps = 50/370 (13%)

Query: 13  QLAEKVDRLRQMMLAFQVPNL-----QIFRSEP--IHYRMRAEFHIWHDGDDLYHIMFDQ 65
           Q   K   L + +      +L     ++   +P  + +R R  F +  +G      M   
Sbjct: 103 QRELKSAVLAEQLQRLAGIDLAPLVEEVSGEDPAGLGWRTRTGFTVTDEGAL---GMHAH 159

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++ + + +            L +  +  + L  L    + +++     S    + L+   
Sbjct: 160 RSHQVLPVQEMP--------LAVRGIRGLDLWGLDFTGVERVEIAAPTSGDGPLLLL--- 208

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
                 ++ A R+   L    + +    + ++      R +++E +        +R   +
Sbjct: 209 ---SGAKQAAARVAKQLPEGVFTLHWEPKTSRVSALRGRGWLEETVADK----RFRVSGD 261

Query: 186 SFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEI 239
            F Q +      + E V   L           +LY G G F+ +LA        VL+VE 
Sbjct: 262 GFWQIHRNAPKVLSEAVGDYLGDDLLPGAAAADLYAGAGLFTALLADAVGSTGWVLSVEG 321

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  + + A+ N A      V+I+    +       RE            S +   + +DP
Sbjct: 322 SPVTSKDAKLNFA--GRAEVQILPGRVERVLATAARE-----------SSRKLDVVVLDP 368

Query: 300 PRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHM 356
           PR+G   A VG + A     + Y+SC+P S  RDL         + +L  FD +P+T H+
Sbjct: 369 PRAGAGKAVVGRITASGAKAVAYVSCDPASFARDLGYFFRAGWELTQLRAFDLYPHTHHL 428

Query: 357 ECGVLLVRKP 366
           E   LL  KP
Sbjct: 429 ETVALLRPKP 438


>gi|221640698|ref|YP_002526960.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides KD131]
 gi|221161479|gb|ACM02459.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides KD131]
          Length = 404

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 129/354 (36%), Gaps = 32/354 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K + +R  +    +      I  S P   R RA                 +Q+   + 
Sbjct: 77  DWKQEVVRSALAGQGIEAPFRPIAVSPPAS-RRRATLSARRTKGGALVGFHARQSGTIVA 135

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I         + A M  + A ++      A+L     +T       V +   + LD   R
Sbjct: 136 IPECKLLHPDLMAAMPALEALVKTGGSRSAEL--SLTVTRSLGGPDVAVTGGKPLDAGLR 193

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
               ++ +A    +   +    A   ++   + +   R+             ++F Q  A
Sbjct: 194 AALAQVAEAQALARLTWEGETIA--LRVPPAQPFGPARVVP---------PPSAFLQATA 242

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +L  V  A  G    + +L+ G G FSL LA     V AVE        A  +  
Sbjct: 243 EGEAALLAAVRDAI-GEARTVTDLFAGAGTFSLPLA-AGAEVHAVEGDAAM--MAALDRG 298

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +K V + +++     RR  E + L+       R + + +DPPR+G +     + 
Sbjct: 299 WRQAPGLKRVTVETRDL---FRRPLEPDELR-------RTEAVVIDPPRAGAEAQARALA 348

Query: 313 QAY-PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
            A  P + ++SCNP +  RD L ++   + ++ + + DQF ++ H+E      R
Sbjct: 349 CAAVPVVAFVSCNPVTFARDALILMRGGYRLDWVQVVDQFRWSSHVELAARFSR 402


>gi|316932488|ref|YP_004107470.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315600202|gb|ADU42737.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris DX-1]
          Length = 413

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 128/359 (35%), Gaps = 39/359 (10%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ-TKERM 71
           A K D + + +      VP   +  +     R R   H      D+  + F    + + +
Sbjct: 86  AWKRDLVIETLAQAGIDVPVDPLIDAHGAG-RRRITLHARRGTHDILKVGFSAAASHDVI 144

Query: 72  RIDYFMPGSLLIN-ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
            ID+       +N AL         L P+ +    Q+   T+  +   + +     L   
Sbjct: 145 GIDHCPILDPGLNGALEAAWALAESLTPVGKPLDIQV---TATDNGLDIDVRGSGPLPPK 201

Query: 131 WRECAIRLRD--ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
                 +L +   L       +L+       + + +  V                  +F 
Sbjct: 202 MITALSQLAEQHKLARLTRHGELVLLRRPPVVAIGKAKVT-------------LPPGAFL 248

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q    +    L  +  A  G    + +L+CG G F+L LA    RV A +   P+V A +
Sbjct: 249 QA-TALGEQTLAGLAMAHLGRAKQVADLFCGVGPFALRLAEKV-RVFACDSDAPAVAALQ 306

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
              AA     +K V+  +++     RR      L+D       F  +  DPPR G     
Sbjct: 307 K--AAPGTPGLKPVKAEARDL---FRRPLAPPELRD-------FDAVLFDPPRQGAQAQA 354

Query: 309 VGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +  +  P ++ +SCN  +  RD  +L    + +E +   DQF YT H+E      +K
Sbjct: 355 AQLAASRVPLVIAVSCNATTFARDAKLLIDGGYRLEGVIPVDQFKYTPHVELVASFRKK 413


>gi|158316945|ref|YP_001509453.1| deoxyribonuclease [Frankia sp. EAN1pec]
 gi|158112350|gb|ABW14547.1| deoxyribonuclease/rho motif-related TRAM [Frankia sp. EAN1pec]
          Length = 517

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 133/404 (32%), Gaps = 50/404 (12%)

Query: 12  QQLAEKVDRLRQMMLAFQVPN----LQIFRSE-P--IHYRMRAEFHIWHDGDDLYHIMFD 64
            Q   K   +   +      +    ++   SE P  + +R R  F    DG      +  
Sbjct: 98  AQRRLKARVVEDALRRLAGLDRAVLVEALPSEGPDGLGWRTRMRFSRTSDGG---VGLRA 154

Query: 65  QQTKERMRIDYFMPGSLLINALM------------------IEMMATIRLEPLLRAKLFQ 106
            ++ E +          L+  ++                  +E++A          +   
Sbjct: 155 HRSHEVVPTPDCKIAHPLLARVIADPVFLTGDGSPEVTGQAVELVAMPGDAVAYSTRSGG 214

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH----ARKYQIQLIGRANKTKICL 162
                +    A         +D A R       D       A         RA+   +  
Sbjct: 215 WRVTETGPAAADAEGTGATRVDGATRVDGATRVDGATRVDGADGADPDSALRASAVPVRT 274

Query: 163 DRDYVDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYC 218
             D  +     +        +R     F Q +      ++  V  A     GD  L+LYC
Sbjct: 275 GPDRGEPAPVEVVETVEGREFRLEPGVFWQVHPAAAATLVAAVREAAAAAAGDTALDLYC 334

Query: 219 GNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVK-------IVRMSSKE 268
           G G F+  LA       RV+A+E  + +V +A  ++A     +++        VR     
Sbjct: 335 GAGLFAAFLAEAVGPTGRVIALESDEAAVRSAARSLADLPWVSLRSLRVTPATVRGLVGA 394

Query: 269 FTQAMRREREFNRLKDIDIHSYRF-KTIFVDPPRSGLDDATVGMVQAYP--HILYISCNP 325
             Q                 + R      +DPPR+G     +  + A+    ++Y++C+P
Sbjct: 395 ADQPAAPADGLPAGGATPGPARRAVDVAVLDPPRTGTGREVMTELLAHRPRRVVYVACDP 454

Query: 326 DSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
            +L RD+++     + +  L  FD FP T H+EC   L   P+G
Sbjct: 455 AALARDVAVAAGEGYRLTELRAFDLFPMTSHVECVATLEPAPAG 498


>gi|119623240|gb|EAX02835.1| chromosome X open reading frame 34, isoform CRA_d [Homo sapiens]
          Length = 289

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 93/247 (37%), Gaps = 56/247 (22%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLEL 216
           ++     Y+ E L     +L  R   ++F Q N      ML   +    G+  D  LL++
Sbjct: 58  QLLFGEPYIFEELL----SLKIRISPDAFFQINTAGAE-MLYRTVGELTGVNSDTILLDI 112

Query: 217 YCGNGNF-----SLVLA-------------------RHFDRVLAVEIAKPSVEAARYNIA 252
            CG G +     S   +                   +H  RVL +E+ + +VE AR+  A
Sbjct: 113 CCGTGKWKPRAESACCSAPKALVACGGGRGEVVVVVQHTSRVLGIELLEQAVEDARWTAA 172

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N + N +     +++    + + +E            +     V+P R+GL    +  +
Sbjct: 173 FNGITNSEFHTGQAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVIQAI 222

Query: 313 QAYPHI---LYISC--------NPDSLCRDL----SILSTTHTIERLALFDQFPYTRHME 357
           + +  I   +++SC        N   LC        +L     +++    D FP+T H E
Sbjct: 223 RNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLFPHTPHCE 282

Query: 358 CGVLLVR 364
             +L  R
Sbjct: 283 LVLLFTR 289


>gi|193699922|ref|XP_001950974.1| PREDICTED: tRNA (uracil-5-)-methyltransferase homolog A-like
           [Acyrthosiphon pisum]
          Length = 645

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 157/423 (37%), Gaps = 83/423 (19%)

Query: 9   QYEQQLAEKVDRLRQMMLAF-------QVPNLQ-------------IFRSEPI------- 41
           +YE+QL +K +  R +   F       Q P  +              F   PI       
Sbjct: 136 EYEEQLRKKSEEARILFQRFGTIIQRKQPPLAEWCAMRKRQLNSDLAFELSPIIPSQKVD 195

Query: 42  HYRMRAEFHIWHDGDDLYHIMFDQQTKERMR-IDYFMPGSLLINALMIEMMATIRLEPLL 100
            YR + E+ +  + D     +   + K+ M  I Y  P   L N  M  +    + E  +
Sbjct: 196 RYRNKCEWSVGINPDSDSVAV-GLRVKDSMDGIHYVGPPDCLRNLPMPMITLAKKFEDFV 254

Query: 101 RAK------LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL------RDALHARKYQ 148
           +           +    ++  + +V+++ ++ L D  +   I+       ++ +      
Sbjct: 255 KNHSQDWRIWRNMIIRMNEDGEVMVSIVINQHLLDTEQLSNIKCSISEWSKNNITENVVS 314

Query: 149 IQLIGRANKT-----------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           +       KT           ++   + Y+ E+L      L       ++ + N+     
Sbjct: 315 LYFQVHGEKTLADCIGTTIEAELLWGQKYIVEKLL----NLSLEISPATYFRLNSLGAEE 370

Query: 198 MLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + + V   A       +L+L+CG+G  +L LA+   +V+ +E+ K ++  A+ N   N +
Sbjct: 371 LCKVVADLADVNENTTVLDLFCGSGCLALTLAKKCKQVVGIELIKANIMDAKRNAEINGI 430

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            N + +   +++   ++      N+LK  ++      T+ +DPP +G+    V  ++ + 
Sbjct: 431 VNCEFIAGRTEDILDSV-----LNKLKGCNV------TVIMDPPLTGVSTGLVRTLRKFK 479

Query: 317 ---HILYISCNPDSLCRDLSILST------------THTIERLALFDQFPYTRHMECGVL 361
              +++Y+  N     ++L   S+                 R+   D  P+T   E  + 
Sbjct: 480 EAINLIYVCSNHKLPLKNLLDFSSVVRYWQKPIDSDPFLPLRVVPIDMCPHTLRSELVLH 539

Query: 362 LVR 364
             R
Sbjct: 540 FKR 542


>gi|288917114|ref|ZP_06411484.1| RNA methyltransferase, TrmA family [Frankia sp. EUN1f]
 gi|288351483|gb|EFC85690.1| RNA methyltransferase, TrmA family [Frankia sp. EUN1f]
          Length = 434

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 132/382 (34%), Gaps = 56/382 (14%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI--------HYRMRAEFHIWHDGDDLYHIM 62
           + Q   K   +   +         + R EP+         +R R  F    DG      +
Sbjct: 78  DAQRRLKATVVEDSLRRIAGLERAV-RVEPLPAKADDGLGWRTRMRFARTPDGG---VGL 133

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
              ++ + +           +  ++ +              +F       +     V L+
Sbjct: 134 RAHRSHQVVATPDCRIAHPSLAQVIADP-------------VFLQGPAAPERTGQAVDLV 180

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA-------- 174
             +L        A+       + +  ++L        +  +    +E + VA        
Sbjct: 181 ATKLTASGTTSDAVAFSTGSGSWQL-VRLRPEDGLEPVAPEAGAAEEPVEVAGPAGVAEA 239

Query: 175 ------GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
                      +R     F Q +      +++ V AA     G+  L+LY G G F+  L
Sbjct: 240 VEVVETVEGRSFRLEPGVFWQVHPAAAATLVDAVRAAAAAAPGETALDLYSGAGLFAAFL 299

Query: 228 ARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A       RV+A+E  + +V +A  ++A     ++  V + S   T A  R      +  
Sbjct: 300 AEAVGPTGRVIAMESDEAAVRSAARSLA-----DLPWVSLRSLRVTPATVR----GLIGG 350

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTI 341
            D          +DPPR+G     +  + A+    ++Y++C+P +L RD++      + +
Sbjct: 351 SDRQGGGVDVAVLDPPRTGAGREVMAALLAHRPRRVVYVACDPAALARDVAAAAEEGYRL 410

Query: 342 ERLALFDQFPYTRHMECGVLLV 363
             L  FD FP T H+EC   L 
Sbjct: 411 TALRAFDLFPMTSHVECVATLE 432


>gi|269219402|ref|ZP_06163256.1| 23S rRNA methyltransferase/RumA [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211195|gb|EEZ77535.1| 23S rRNA methyltransferase/RumA [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 409

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 108/329 (32%), Gaps = 67/329 (20%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI--EMMATIRLEPLLR 101
           R R EF +  DG      M+   + E M +  F      I  L +     +  +    ++
Sbjct: 139 RTRIEFVVGEDGRP---AMYRDSSHELMGVASFPLAVEEIGELDLFGGWRSWWKPGERVK 195

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
           A         S SD A+          DAW    +R  + +         +         
Sbjct: 196 AL------APSGSDPALFV------GGDAWWAPGMRADEVVREDVVVGGEL--------- 234

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
                             Y+     F Q +      ++E V+       GD ++ELY G 
Sbjct: 235 ----------------YAYQVHAGGFWQVHRAAAASLIELVMRGANVQPGDRVVELYSGA 278

Query: 221 GNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           G  +  LA        V A+E  + +V+ AR N+        +  R+ +           
Sbjct: 279 GLLTQPLAVATGEAGAVYAMEATREAVDDARANLRDLPWARTRAARIDA----------- 327

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL 335
                    +       +  DPPR+GL      M+       I+ +SC+P S+ RD++++
Sbjct: 328 -------HALEGVNGDVVVADPPRAGLGTELAAMLGEAKVGRIVLVSCDPASMARDVAVM 380

Query: 336 ST-THTIERLALFDQFPYTRHMECGVLLV 363
                        D FP T H EC  ++ 
Sbjct: 381 RGCGRKATFFEAVDIFPNTHHFECVTVVE 409


>gi|298529142|ref|ZP_07016545.1| (Uracil-5)-methyltransferase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510578|gb|EFI34481.1| (Uracil-5)-methyltransferase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 386

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 16/196 (8%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
           +L +    +  +    SF Q N  +N  ++++VL+    +   L +LY G GNF+L  A 
Sbjct: 201 KLPLEKSGISLQVRPGSFFQANWRLNQDLVQYVLSRLAHLDS-LADLYAGAGNFALPCAA 259

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              +VLA+E    + + A        +NN++I           +RR      LK      
Sbjct: 260 GGHKVLALESDSRAAKGALRAAREGGLNNLRIHTGD-------LRRREAMQTLKKFAPQG 312

Query: 290 YRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLAL 346
                + +DPPRSG       +  +++   + +ISC+  + CRDL   L     I   A+
Sbjct: 313 -----LILDPPRSGAGRNLQSLAGLESLQRLAWISCDVVNTCRDLKPFLEAGWRIREAAM 367

Query: 347 FDQFPYTRHMECGVLL 362
           FD FP T HME   +L
Sbjct: 368 FDMFPQTWHMEAVFVL 383


>gi|126734434|ref|ZP_01750181.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. CCS2]
 gi|126717300|gb|EBA14164.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp. CCS2]
          Length = 400

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/356 (18%), Positives = 120/356 (33%), Gaps = 34/356 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
             K D + + + A  +    +FR     P   R RA+                + +   +
Sbjct: 74  DWKQDIVVKAVQARGID--TVFRDIATSPSQSRRRAKLSGRRTKKGAIVGFHTRASDTLV 131

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
           ++      +  +      + A   L    + ++     +T  S    V +   + L    
Sbjct: 132 QVPDCRLLTPALIDSFPALEALTVLACSRKGEI--DLTVTEASLGPDVLVATDKELTPQL 189

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           R     L     A ++ +  +   ++  + ++    +   T             +F Q  
Sbjct: 190 RVELAGL-----ANQFGLSRLVWNDEPVVMINPPAQEFGGTGVV------PPPGAFLQAT 238

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +L  V   T      +++L+ G G F+L LA+    V AVE      E A  + 
Sbjct: 239 KHGEATLLAAVEEITMNAN-RIVDLFAGCGTFTLPLAKRA-EVHAVEG-----EVAMLDA 291

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                     +R  + E     RR  E + L+        F T  +DPPR+G +     +
Sbjct: 292 LDRGWREGHQLRRVTTETRDLFRRPLETDELR-------HFDTAVIDPPRAGAEAQIETL 344

Query: 312 VQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
             +    I  +SCNP +  RD   L         + + DQF ++ H+E      RK
Sbjct: 345 AASEIKTIAMVSCNPVTFARDARRLVDAGFDTPWMQVVDQFRWSPHVEIVASFTRK 400


>gi|30249809|ref|NP_841879.1| SAM-binding motif-containing protein [Nitrosomonas europaea ATCC
           19718]
 gi|50401755|sp|Q82TM7|Y1857_NITEU RecName: Full=Uncharacterized RNA methyltransferase NE1857
 gi|30180846|emb|CAD85768.1| SAM (and some other nucleotide) binding motif [Nitrosomonas
           europaea ATCC 19718]
          Length = 393

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 125/375 (33%), Gaps = 88/375 (23%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEP----IHYRMRAEFHIWHDG 55
               +I  Y+ QL +K +R    M    F + +L I   +P      YR R  F +  DG
Sbjct: 84  GCPWMIADYDSQLEQKKNRFLYAMHRVGFDLADLNIGAVQPSPDLFGYRNR--FQVKTDG 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           + L      + +   +          LI                                
Sbjct: 142 EKL--GFVAEGSHHIV-----PIEDCLI-------------------------------- 162

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
                      L+ A R+    LR  L +R++        +   I LD     E + +  
Sbjct: 163 -----------LNPACRQHLQTLRKHLPSREWS--PAPGDDWNFIDLDDQSPAEPVLLNW 209

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLAR-HFD 232
           +          F Q N   N  M  W+       G    ++EL+CG+GNF+ V+A+    
Sbjct: 210 K--------QPFRQGNDAQNQWMRSWLKYALEQHGHSHKIVELFCGSGNFTEVIAQTGCP 261

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            +LA E    ++   R         N+  V   + +       +     ++D  I     
Sbjct: 262 EILAYEADPQAITVLRQ-------KNLPGVDARTADLYHPFIWKILKKNVQDAGI----- 309

Query: 293 KTIFVDPPRSGLD--DATVGMVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             + +DPPRSGL           A   I YISC+P +  RD  I          + L D 
Sbjct: 310 --LVLDPPRSGLKTLRGFFDAFAALETICYISCDPVTFARDAWIFCKNGWKFTDIQLIDL 367

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E      +
Sbjct: 368 FPHTPHIEITATFHK 382


>gi|226366231|ref|YP_002784014.1| RNA methyltransferase [Rhodococcus opacus B4]
 gi|226244721|dbj|BAH55069.1| putative RNA methyltransferase [Rhodococcus opacus B4]
          Length = 419

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 110/362 (30%), Gaps = 48/362 (13%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSE-P-----IHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           Q   K   + + +L        +   E P       +R R    +  DG   YH      
Sbjct: 96  QRDMKSQVVSEQLLRLARLERNVAVEELPGTGDGTGWRTRVRLAVDPDGRPGYHRHRSSG 155

Query: 67  TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
                     +   L+   +       +           QI  L    ++ +V       
Sbjct: 156 ----------IVTDLVCPQIEPAAYDGVGEHDWKPGSEVQI-VLDGAGERHVV------E 198

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           +         R          +    G     ++ +      ER+      L        
Sbjct: 199 IAPPKVSRTGRTSPGRRGAMARRAAGGAPRAERVLVGSGRPVERVRDREWEL----AATG 254

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q + G        V        GD   +LY G G F+  LA     V +VE A+ +V 
Sbjct: 255 FWQAHRGAAEAYSAVVTEWAGLSAGDTAWDLYGGVGVFAAALAGRAGHVDSVESARQAVA 314

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
             +   A   +  V+      +     +                   + + +DPPR+G  
Sbjct: 315 DGK--AALADLPQVRFHADRVERAIAGLTSP---------------PRVVVLDPPRAGAG 357

Query: 306 DATVGMVQAYPHIL--YISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
              V  V A       ++ C+P S  RD+ + L   + ++ L  FD FP T H+EC  LL
Sbjct: 358 REVVEAVAAAGAERVVHVGCDPASFARDIGLYLGQGYHVDELRAFDAFPLTHHVECIALL 417

Query: 363 VR 364
            R
Sbjct: 418 TR 419


>gi|162450819|ref|YP_001613186.1| RNA methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161161401|emb|CAN92706.1| RNA methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 765

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 144/435 (33%), Gaps = 89/435 (20%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL----QIFRSEP-IHYRMRAEFHIWHDGD 56
              L+   Y +QL  K  R+      +    L     +  ++P   YR RA+  +   G 
Sbjct: 55  GCPLIAGDYAEQLGTKRARVVSAAAHYPSLGLLQTSSVIPADPITGYRGRAKLIVAPSGA 114

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP----------------LL 100
              +        E + I      +  + A+   +   I   P                +L
Sbjct: 115 IGLYG--RTGHHEVVDIPGCRVLTPALAAVTSRLRELIASPPPEVRPLLLPYDPARGGVL 172

Query: 101 RAKLFQIDYLT-----------SQSDQA--IVTLIYHRL---LDDAWRECAIRLRDALHA 144
           RA   +  +L            ++ + A  +VT +  R      D  RE    +R  L  
Sbjct: 173 RALDLREVHLAPGTPLFAEVGATEDNPAFVLVTFVLQRERACTRDELREAGRAIRPMLPR 232

Query: 145 RKYQIQLIGRAN-------KTKICLDRDYVDERLTVAGRTLIYRQIE-NSFTQPNAGINV 196
                     A        +T +     + ++R+        Y      SF Q +     
Sbjct: 233 VIGVAANFHDAEAPQILGPETIVLDGTAHAEDRIGQ-----TYHIAAFGSFVQAHRAQAA 287

Query: 197 HMLEWVLAATKGIQGD---------------------LLELYCGNGNFSLVLARHFDRVL 235
            +   +L     ++ D                     +L+LY G+G  SL LA+  +RVL
Sbjct: 288 RVHALLLREIASLENDGPVIEGEAALGPASRRKEPPRILDLYGGSGAISLALAQGGNRVL 347

Query: 236 AVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            VE   P+   AR    A  +   V++      E   ++    E            +F  
Sbjct: 348 MVESFAPAAANARAAAEAQGLSQRVEVRTGDVAEIVGSLVNSSE------------KFDG 395

Query: 295 IFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
           I V+PPR G+       +     P ++Y+SC+PD+L RDL       ++   L   D  P
Sbjct: 396 IVVNPPRRGVSPTAREAIARLGAPLLVYVSCDPDTLARDLDHFCRLGYSSTELTPLDMIP 455

Query: 352 YTRHMECGVLLVRKP 366
            T  +E    L R P
Sbjct: 456 LTEEIETIAALRRTP 470


>gi|194228102|ref|XP_001492969.2| PREDICTED: similar to Putative methyltransferase CXorf34 homolog
           [Equus caballus]
          Length = 611

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 132/406 (32%), Gaps = 86/406 (21%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF--------------------QVPNLQIFRSEPIHYRM 45
            YE+QL  K     ++ Q + ++                     + +  I       YR 
Sbjct: 242 SYEEQLKVKFEAQKKILQRLESYLQMLNGVSVTTAAPKSKGLCCLLHPIIPSPVIDGYRN 301

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRL 96
           ++ F +    D       Y++   +          ++         +       +    L
Sbjct: 302 KSTFSVNRGPDGNPKTVGYYLGTWRDGNIICVRSNQLKNMPEKHNQVAQYYEVFLRQSPL 361

Query: 97  EPLLRAK----LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA--------- 141
           EP L         ++   T+     +  + +H  +L  +        +++          
Sbjct: 362 EPCLLFHEGGYWRELTVRTNSQGHTMAIITFHPQKLTQEELCVQKETVKEFFTKGPGAVC 421

Query: 142 -LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            L +  +Q   + R +  +      + +  +      L  R   ++F Q N      ML 
Sbjct: 422 DLTSLYFQESTMTRCSHQQSPYQLLFGEPHIFEDLLGLKIRISPDAFFQINTSGAE-MLY 480

Query: 201 WVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
             +    G+  +  LL++ CG G   L LA++  +VL +E+ + +VE AR+  A N    
Sbjct: 481 QTVGELSGVNSNTILLDICCGTGVIGLSLAQYTSQVLGIELVEQAVEDARWTAAFNDHRV 540

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           ++ +R                      +  + R        P+           +   ++
Sbjct: 541 IQAIR----------------------NCRAIRTLVFVSCKPQG----------ETTRNV 568

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           + + C P+S  +   +L     + +    D FP+T H E  +L  R
Sbjct: 569 VELCCPPNSAKK---LLGEPFVLRQAVPVDLFPHTPHCELVLLFTR 611


>gi|189218150|ref|YP_001938792.1| SAM-dependent RNA methyltransferase, TrmA family [Methylacidiphilum
           infernorum V4]
 gi|189185008|gb|ACD82193.1| SAM-dependent RNA methyltransferase, TrmA family [Methylacidiphilum
           infernorum V4]
          Length = 361

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 20/207 (9%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENS-FTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
           KI   +D   ER+     +L    I  S F Q N  +   + E V          ++E Y
Sbjct: 169 KITQVQDRCSERI--RHFSLREPTIPGSGFYQVNRFLLEKLKETVKKLISSNISFIIEGY 226

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G F++ L++  +R+ A+E    S+           + NV  +    +E       + 
Sbjct: 227 CGAGFFTVPLSQSVERLYAIEANPQSLAE----AKKLGLRNVVFIEGKVEEKIADCFSQV 282

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL 335
           E ++                DPP  GL    +  +  +P   ++Y+SCNP +L RD+  L
Sbjct: 283 EKSK-----------AAYLFDPPEEGLAQELLLWLIDHPLPQLVYVSCNPLTLKRDILRL 331

Query: 336 STTHTIERLALFDQFPYTRHMECGVLL 362
             ++ ++++   D FP T  +E   +L
Sbjct: 332 EESYVLKKIIPLDLFPRTPQIESVAVL 358



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 51/247 (20%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHDG 55
            G L     Y  +L+ K  +L ++   F      +    +    P  YR R   H +   
Sbjct: 79  GGCLYQHLDYNTELSIKQQQLLEIFFGFIKDEPSLIEPIVASPSPYGYRNRISLHAY--- 135

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                  +++ +   + ++  +  S  IN L+ E +  ++     R + F +   T    
Sbjct: 136 -RGVVGFYERGSNRIVPLESCLIASEEINRLLAEKITQVQDRCSERIRHFSLREPTIPGS 194

Query: 116 QAIVTLIYHRLLDDAWRECAIRL-------------------------RDALHARKYQIQ 150
                    R L +  +E   +L                          + L+A +   Q
Sbjct: 195 GFYQVN---RFLLEKLKETVKKLISSNISFIIEGYCGAGFFTVPLSQSVERLYAIEANPQ 251

Query: 151 LIGRANKT---KICLDRDYVDERLTVAGRTLIYRQIENS-----FTQPNAGINVHMLEWV 202
            +  A K     +      V+E++        + Q+E S     F  P  G+   +L W+
Sbjct: 252 SLAEAKKLGLRNVVFIEGKVEEKIADC-----FSQVEKSKAAYLFDPPEEGLAQELLLWL 306

Query: 203 LAATKGI 209
           +      
Sbjct: 307 IDHPLPQ 313


>gi|209966020|ref|YP_002298935.1| RNA (Uracil-5-)-methyltransferase, putative [Rhodospirillum
           centenum SW]
 gi|209959486|gb|ACJ00123.1| RNA (Uracil-5-)-methyltransferase, putative [Rhodospirillum
           centenum SW]
          Length = 449

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 120/358 (33%), Gaps = 33/358 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           A K D L   +    +   ++  +     P   R RA       G  L+    ++ +   
Sbjct: 117 AWKTDLLASALERAGLAGPEVRLNPLVRTPPGSRRRAVLTAVRRGRRLWLGFNERASHRL 176

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           + ++     +       +       L  +L         LT   D   + L       + 
Sbjct: 177 VDVETCPVLAPA--LAALLAPLRAVLADILSDGQQIDVALTLLDDGPDLVL-------EG 227

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--VAGRTLIYRQIENSFT 188
             E  +   +AL A      L   + +TK   D   V  R T  V    +       +F 
Sbjct: 228 LPEPDLPRLEALSAFAGAQDLARLSYRTKPGGDALPVARRRTGLVGFGGVTVSPAPGAFL 287

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q +      ++   L+   G +  + +L+ G+G     LA    RV AVE    ++    
Sbjct: 288 QASREGEAALVAAALSGCAGAES-VADLFAGSGTIGFPLAAR-TRVHAVEGDAQALATLD 345

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                            +   T      R+  R         RF+ + +DPPR+G     
Sbjct: 346 QGARQL-----------AGRLT---MERRDLFRDPVTAAELARFQAVVIDPPRAGAQAQA 391

Query: 309 VGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             + + A P ++ +SCNP +  RD   L    + +  +   DQF ++ H+E   L  R
Sbjct: 392 AELARSAVPAVVALSCNPATFVRDARTLVEGGYRLLEVTPIDQFLWSPHLELAALFRR 449


>gi|296447863|ref|ZP_06889774.1| methyltransferase small [Methylosinus trichosporium OB3b]
 gi|296254604|gb|EFH01720.1| methyltransferase small [Methylosinus trichosporium OB3b]
          Length = 417

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 125/358 (34%), Gaps = 41/358 (11%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHY--RMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K   +   +    +P L++      H   R RA FH   +           ++ E + 
Sbjct: 83  RWKRGLVETALRNAGLP-LEVGALVDAHGAGRRRATFHARFERGAARLGFMQARSHEIVE 141

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           ID        ++    E+ A +      RAK   +  +T  +    V L     L++   
Sbjct: 142 IDACPLLEPDLSRA-PEIAAALAQALASRAKPLDV-AVTLTTGGLDVDLRGAGALEEGET 199

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDY---VDERLTVAGRTLIYRQIENSFTQ 189
              + L ++L       +L        + L R     V E L V            +F Q
Sbjct: 200 LALLNLAESL----DLARLANHGRL--VALRRPPATAVGETLVVP--------PPGAFLQ 245

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
             A     +   V   + G  G + +L+CG G F+L LA    +V AV+   P++EA   
Sbjct: 246 ATARGEAEIAARVEQGSAG--GRVADLFCGIGVFALRLAARA-QVTAVDSDAPAIEALA- 301

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
                        + +         R R+  R         RF  +  DPPR+G      
Sbjct: 302 -------------KAARAAMLPIEARTRDLFRSPLTAEELARFDAVIFDPPRAGAPAQAR 348

Query: 310 GMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            + ++    ++ +SC+  S  RD + L    +    +   DQF ++ H+E      R+
Sbjct: 349 EIARSSVRRVVAVSCDAQSFARDAASLREGGYEAGVVTPIDQFRHSPHVEIVATFERR 406


>gi|126463623|ref|YP_001044737.1| RNA SAM-dependent methyltransferase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105287|gb|ABN77965.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 404

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 129/354 (36%), Gaps = 32/354 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K + +R  +    +      I  S P   R RA                 +Q+   + 
Sbjct: 77  DWKQEVVRSALAGQGIEAPFRPIAVSPPAS-RRRATLSARRTKGGALVGFHARQSGTIVA 135

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I         + A M  + A ++       +L     +T       V +   + LD   R
Sbjct: 136 IPECKLLHPDLMAAMPALEALVKTGGSRSGEL--SLTVTRSLGGPDVAVTGGKPLDAGLR 193

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
               ++ +A    +   +    A   ++   + +   R+             ++F Q  A
Sbjct: 194 AALAQVAEAQALARLTWEGETIA--LRVPPAQPFGPARVVP---------PPSAFLQATA 242

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +L  V  A  G    + +L+ G G F+L LA     V AVE        A  +  
Sbjct: 243 EGEAALLAAVRDAI-GDARTVTDLFAGAGTFTLPLA-AGAEVHAVEGDAAM--MAALDRG 298

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +K V + +++     RR  E + L+       R + + +DPPR+G +     + 
Sbjct: 299 WRQAPGLKRVTVETRDL---FRRPLEPDELR-------RTEAVVIDPPRAGAEAQARALA 348

Query: 313 QAY-PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +A  P + ++SCNP +  RD L ++   + ++ + + DQF ++ H+E      R
Sbjct: 349 RAAVPVVAFVSCNPVTFARDALILMRGGYRLDWVQVVDQFRWSSHVELAARFSR 402


>gi|221056410|ref|XP_002259343.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193809414|emb|CAQ40116.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 825

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 26/219 (11%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLE 215
           +     +Y++E +        +    + F Q N      + + V+      +     + +
Sbjct: 619 EHLWGMEYLEEIILNN----RFLLTPSCFFQVNHTSCEILYKKVIDYINISEKKKNYIFD 674

Query: 216 LYCGNGNFSLVLARHFD----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           L CG G  S+  A         ++ ++I + S+  A  N   N + N K ++   +E   
Sbjct: 675 LCCGTGTISICAANELKGKDVHIVGIDICEDSIICANKNAEMNKIKNYKFIQGRVEELFA 734

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSL 328
                   N +K++   +     I VDPPRSGL ++ + ++   Q    I+Y+SCNP +L
Sbjct: 735 --------NEIKNVSEKNSNV-IIIVDPPRSGLANSVLNILSSNQLIGQIIYVSCNPITL 785

Query: 329 CRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +++ +   +    ++ L   D FP+T H+EC   +V+
Sbjct: 786 ISNVTHVLFQNENLRMKNLVFVDMFPHTFHLECITNIVK 824


>gi|332559676|ref|ZP_08413998.1| RNA SAM-dependent methyltransferase [Rhodobacter sphaeroides WS8N]
 gi|332277388|gb|EGJ22703.1| RNA SAM-dependent methyltransferase [Rhodobacter sphaeroides WS8N]
          Length = 404

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 128/354 (36%), Gaps = 32/354 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K + +R  +    +      I  S P   R RA                 +Q+   + 
Sbjct: 77  DWKQEVVRSALAGQGIEAPFRPIAVSPPAS-RRRATLSARRTKGGALVGFHARQSGTIVA 135

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I         + A M  + A ++       +L     +T       V +   + LD   R
Sbjct: 136 IPECKLLHPDLMAAMPALEALVKTGGSRSGEL--SLTVTRSFGGPDVAVTGGKPLDAGLR 193

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
               ++ +     +   +    A   ++   + +   R+             ++F Q  A
Sbjct: 194 AALAQVAEEQALARLTWEGETIA--LRVPAAQPFGPARVVP---------PPSAFLQATA 242

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +L  V  A  G    + +L+ G G FSL LA     V AVE        A  +  
Sbjct: 243 EGEAALLAAVRDAI-GDARTVTDLFAGAGTFSLPLA-AGAEVHAVEGDAAM--MAALDRG 298

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +K V + +++     RR  E + L+       R + + +DPPR+G +     + 
Sbjct: 299 WRQAPGLKRVTVETRDL---FRRPLEPDELR-------RTEAVVIDPPRAGAEAQARALA 348

Query: 313 QAY-PHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +A  P + ++SCNP +  RD L ++   + ++ + + DQF ++ H+E      R
Sbjct: 349 RAAVPVVAFVSCNPVTFARDALILMRGGYRLDWVQVVDQFRWSSHVELAARFSR 402


>gi|89067447|ref|ZP_01154960.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola granulosus
           HTCC2516]
 gi|89047016|gb|EAR53070.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola granulosus
           HTCC2516]
          Length = 386

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 74/356 (20%), Positives = 126/356 (35%), Gaps = 35/356 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNLQ--IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K+ R+ Q + A  +      I  S P   R RA+                + +   + 
Sbjct: 59  EWKIGRVVQALKARGLEAEIAGIATSPPFS-RRRAKLSGRRMKKRSLVGFHARASDVLVE 117

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           +         + AL+  + A +   PL+ ++  ++D+  + +       I         +
Sbjct: 118 VPQCQILRPRLVALVPALEALM---PLIGSRKGEVDFTVTDTANGPDLHIG------NGK 168

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV--AGRTLIYRQIENSFTQP 190
           E    LR AL A     Q  G +    +    + +  RL                +F Q 
Sbjct: 169 ELTAELRVALAA---FAQDQGLSR---LVYREEPIVTRLPPVQTFGRAAVAPPPGAFLQA 222

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
            A     +L+ V+ A  G    +++L+ G G FSL LA     V AVE   P + A    
Sbjct: 223 TADGEAALLD-VVRAAVGDAERVVDLFAGCGTFSLPLAERA-EVHAVETYAPMLAALDRG 280

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                   +K V   +++            R   I     RF    +DPPR+G       
Sbjct: 281 WRETG-GGLKRVTTEARDLF----------RNPLIADDLARFDAAVIDPPRAGAQAQVAE 329

Query: 311 MVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           + ++    I  ISCNP +  RD   L      +  + + DQF ++ H+E    + R
Sbjct: 330 LARSRLTRIAMISCNPVTFARDAQTLVEAGFRLGPITVVDQFRWSTHVELACAVTR 385


>gi|213161654|ref|ZP_03347364.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 102

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/100 (70%), Positives = 82/100 (82%)

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
           M+++EFTQAM   REFNRL+ ID+  Y+ +TIFVDPPRSGLD  T  MVQAYP ILYISC
Sbjct: 1   MAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFVDPPRSGLDSETEKMVQAYPRILYISC 60

Query: 324 NPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           NP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 61  NPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 100


>gi|183221783|ref|YP_001839779.1| putative RNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911857|ref|YP_001963412.1| SAM-dependent methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776533|gb|ABZ94834.1| SAM-dependent methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780205|gb|ABZ98503.1| Putative RNA methyltransferase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 439

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 141/383 (36%), Gaps = 38/383 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA-FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
             T     YE QL  K   +         +      +S+   YR R +F ++     +  
Sbjct: 74  GCTGQHIPYETQLELKFKPILDSFQRDLGISITPTPQSKTYAYRSRMDFSVF--PGPVIG 131

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQ--- 113
                  +  + I      S   N  +  +   +   P +    R++   + YLT +   
Sbjct: 132 QRQRGNFRNVVPIQECSIQSDWANQALQNVQTLLHKFPEIIWDRRSEEGGLKYLTIRKAQ 191

Query: 114 -SDQAIVTLIY------HRLLDDAWRECAIRLRDA--LHARKYQIQLIGRANKTKICLDR 164
            +D  I+   +      H  +++   EC   L     L         +    + +I   +
Sbjct: 192 NTDDGILIFTFTDGYENHPRMENFRTECLESLSQESILFCYNRPKSEVSAVGRAEILRGK 251

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
               E +        +    +SF QPN    + +L ++       Q +L++L+CGNG FS
Sbjct: 252 QSYTESVL----GHFFEVPFDSFFQPNPNGFLPILNFIKDLIPQNQINLIDLFCGNGFFS 307

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L+    F  V   E+ + S++     IA+N  +     +  S + T         ++ ++
Sbjct: 308 LLYGDLFQHVEGYELTESSIQ-----IASNLFSETYPSKSHSFQVTNLFLSTETLSKKEN 362

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIE 342
                    T+ +DPPR+G        ++ +    + Y+SCNP S   D+S   + +   
Sbjct: 363 A--------TLILDPPRAGAGKLVNHWIRDFGPEFVFYVSCNPYSQKEDVSSFLSAYEYV 414

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
              L D +P+T H E  +   RK
Sbjct: 415 DGILIDPYPHTPHTESVLFFRRK 437


>gi|114776547|ref|ZP_01451592.1| 23S rRNA (uracil-5-)-methyltransferase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553377|gb|EAU55775.1| 23S rRNA (uracil-5-)-methyltransferase [Mariprofundus ferrooxydans
           PV-1]
          Length = 415

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 115/326 (35%), Gaps = 35/326 (10%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R  + +  D    +   +   +   +R +  M  +  +  L  E++      P L + 
Sbjct: 119 RRRVHWMVNRDEQGSFAGFYAHASHRVIRHEQCMVLTPGLQRLHSELL----QHPALLSG 174

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           +  I  L   +D   V L                L          +Q   R +     L+
Sbjct: 175 VQGIQAL-ELADGMHVVLEGAITEASGLPLMCADLP---------VQWWRRQDDVTRPLN 224

Query: 164 RDY--VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           R      +RL    + ++     + F Q     N  ++  ++    G    + +L+CG G
Sbjct: 225 RPVQRFHDRLPAGEQDILLAVGPDDFVQGQEAGNRKLIA-LIQQWAGPVRRIADLFCGIG 283

Query: 222 NFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           N SL LA      +   E+   SV AA+ N     + N   V+ +  E         +FN
Sbjct: 284 NLSLPLAVATGAELFGAELNPASVRAAQTNAKRLGI-NASFVQANLFE---------DFN 333

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSILST-T 338
               I         + +DPPR G       +    P  I+ ISC+P +  RD  +L    
Sbjct: 334 MEPYIGA-----DLLILDPPRRGAKRICSRITHLMPKQIIMISCDPAAGARDGVMLQQQG 388

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
           + ++ L   D F Y  H+E   L  R
Sbjct: 389 YQLKALQALDLFAYAGHVESLSLWER 414


>gi|315500113|ref|YP_004088916.1| (uracil-5)-methyltransferase [Asticcacaulis excentricus CB 48]
 gi|315418125|gb|ADU14765.1| (Uracil-5)-methyltransferase [Asticcacaulis excentricus CB 48]
          Length = 419

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 121/358 (33%), Gaps = 28/358 (7%)

Query: 15  AEKVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH----IMFDQQTK 68
             K   +  ++     +     I  + P   R R   H                  +++ 
Sbjct: 82  DWKRANVETVLRRAGLETEIAPILTTPPAT-RRRVGLHAKQYRQGNTVRTELGYKRRRSW 140

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           ++++I+        + A +  +   I        K   I  +T       V +       
Sbjct: 141 DQVKIEVCPIADPALIAAIPTL-TEIAAHLFEHPKSAPILSVTVSDTGLDVDVRGIERSK 199

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
                   R+  AL A+   I+L   +    I         R   A   L       SF 
Sbjct: 200 SGGLSAQARMEIALIAQSSDIRLARISMADDILYQSHLPSVRFGRATVDL----PAGSFL 255

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q +      M+  V  A  G +  + +L+CG G F+  LA     V A + A  +V A +
Sbjct: 256 QASPHSEADMVALVKDAVAGTK-RVADLFCGAGTFTFPLAETA-SVYAADGAGGAVRALK 313

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
              A      +K + + +++  +A     E                +  DPPR+G +   
Sbjct: 314 --AAIGRAPGLKPITVEARDLFRAPVVAEEMAGW----------DAVVFDPPRAGAEAQA 361

Query: 309 VGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++    ++ +SCN  +  RD  IL      ++R+   DQF ++ H+E   +  R
Sbjct: 362 QQIARSQVARVVGVSCNIQTFARDAKILTEAGFQLDRVTPIDQFLWSGHVELVGVFSR 419


>gi|254517049|ref|ZP_05129107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [gamma proteobacterium
           NOR5-3]
 gi|219674554|gb|EED30922.1| 23S rRNA (uracil-5-)-methyltransferase RumA [gamma proteobacterium
           NOR5-3]
          Length = 402

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 128/372 (34%), Gaps = 85/372 (22%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDL 58
               L   Y +QL  K   +++M+         +      E + YR RA+       D  
Sbjct: 105 GCPWLFMDYREQLRNKEQHVQRMLQPLNATLALSPIWASPEELGYRNRAQL----KSDGK 160

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
                   +++   +   +  +      + ++ A                          
Sbjct: 161 RLGFVAGSSRDLAEVSDCLVLNTKNRQTLTDLRA-------------------------- 194

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
                 RL + AW+    +   +L                        V+ER        
Sbjct: 195 ------RLPNPAWKPGRSKQWTSLDIDDDIDAAQVS------------VNERRP------ 230

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVL-ARHFDRVL 235
                   F Q N+  N  M EWV A          +LEL+ G+GNF+ VL    ++ + 
Sbjct: 231 --------FRQGNSAQNQRMREWVRAKVLQIPTSSPVLELFAGSGNFTEVLVGAAYESIC 282

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AV+   P++E     + A  +  V  +  +      A   E + +R K           +
Sbjct: 283 AVDSFGPAIED----LQARSLPGVTGLCSNLDRDDSAAELEAQLSRAK----------LL 328

Query: 296 FVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPY 352
            +DPPR GL +    + +A     I+YISCN  +LCRDL + +     ++ +   D FP 
Sbjct: 329 LLDPPREGLKNIGDYLHRAPHLNTIIYISCNLATLCRDLQAAMEHKFELQEVQPLDLFPQ 388

Query: 353 TRHMECGVLLVR 364
           T H+E   +L R
Sbjct: 389 TPHIEALTVLKR 400


>gi|315604322|ref|ZP_07879388.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314028|gb|EFU62079.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 449

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 100/256 (39%), Gaps = 34/256 (13%)

Query: 128 DDAWRECAI---RLRDALHARKYQIQLIGR----ANKTKICLDRDYVDERLTVAGRTLIY 180
           D  WR       R+R    +    + LIG     A+  +I  D + +   +        Y
Sbjct: 209 DTPWRRLWKPGDRVRAVAPSGGEPVVLIGEDTYAADGVRI--DVNVLRWNVPRGSGVESY 266

Query: 181 RQIENSFTQPNAGINVHMLEWVL-----AATKGIQGDLLELYCGNGNFSLVLARHFD--- 232
               + F Q +      +   VL     A   G    ++ELY G G FS+ LAR      
Sbjct: 267 YVRPSGFWQTHVCGAEVLANAVLAAAFGAHEAGAGRAIMELYSGAGLFSVPLARAVGESG 326

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH-SYR 291
            V+ +E  + +V  A  N+A             + ++  A     +   + D+       
Sbjct: 327 HVVTLEGDEGAVCDAGENLA-------------AFDWVDAFAGNVDREGVVDLSGQLGAV 373

Query: 292 FKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFD 348
              +  DPPR+G        + A   P ++ +SC+P +  RDL  L+   +T+  L  +D
Sbjct: 374 PDVVVADPPRAGAGAEVCEAIAATGAPRVVLVSCDPAAGARDLRALTECGYTLASLQAWD 433

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H+E   +L R
Sbjct: 434 LFPHTHHVEMVSVLSR 449


>gi|328464298|gb|EGF35727.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus MTCC
           5462]
          Length = 131

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 14/130 (10%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  +++ Y G G  SL +ARH  +V  VE+ + +V  A+ N A NH+ NV      +++ 
Sbjct: 5   KETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVRDAKANAARNHIKNVTFEVGKAEDV 64

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDS 327
            Q         + KD D+       + VDPPR GLD   +  V     P ++YISCNP +
Sbjct: 65  MQ---------KWKDADLP---VDVLMVDPPRKGLDKTFIDAVGYMKPPKMVYISCNPAT 112

Query: 328 LCRDLSILST 337
           L RDL +L+ 
Sbjct: 113 LARDLQLLAA 122


>gi|76154235|gb|AAX25727.2| SJCHGC06451 protein [Schistosoma japonicum]
          Length = 181

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 22/166 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           LL++ CG G   L LA+HF RV+ ++I   ++E A+ N   N + NV+ +   +++    
Sbjct: 23  LLDVCCGTGTIGLCLAKHFHRVIGIDICNSAIEDAKLNAQLNDIQNVEFIAGKAED---- 78

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPDSLC 329
           M R    N  K  D+      ++ VDPPR+GL ++ + +++       I+YISCN +   
Sbjct: 79  MLRNVIQNLPKSCDL------SVVVDPPRAGLHNSVIQILRNCKQINRIIYISCNMEYAV 132

Query: 330 RDLSILST---------THTIERLALFDQFPYTRHMECGVLLVRKP 366
            +    +                    D FP TRH E  +LL R P
Sbjct: 133 GNFIYFAKPCFKKFTGTPFIPTMAEAVDIFPQTRHTEVILLLERIP 178


>gi|296283794|ref|ZP_06861792.1| putative RNA methyltransferase [Citromicrobium bathyomarinum JL354]
          Length = 400

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/329 (21%), Positives = 121/329 (36%), Gaps = 29/329 (8%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
           S P   R RA  H    G  +     ++ + + + +      +  + AL+  + A +   
Sbjct: 98  SPPRS-RRRATLHARRAGKKVVIGFRERGSHQIVDMAECHILAPALFALVDPLRALLAHW 156

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
           P    KL  +D   + +DQ +   I  R +          L D    +      I     
Sbjct: 157 P---GKLA-VDISLTLADQGVTAEI--RDISPENLAQTEALSDFAREQGLARLSIDDGYG 210

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
            +   + + V   L     +L +     +F QP A     +L        G    + +L+
Sbjct: 211 PEPVWEPEPVTVTLGGVPVSLPH----GAFLQPTADGEAALLS-AAKEWCGDAATIADLF 265

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G F+  LA     VLA E  + +  A +    A+     K V    ++  +      
Sbjct: 266 SGLGTFAFALAGPAK-VLAAEADRAAHLACQAAARASG----KPVHSLHRDLFRDPLTAA 320

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSILS 336
           E +R          F  + +DPPR+G  +    + Q+    ++YISCNP S  RD   L+
Sbjct: 321 EISR----------FDCVLLDPPRAGARNQADMIDQSSVRRVVYISCNPQSWARDARRLA 370

Query: 337 TT-HTIERLALFDQFPYTRHMECGVLLVR 364
                +  L    QF ++ H+E   L VR
Sbjct: 371 DGDFRLAELRPVGQFRWSTHVELASLFVR 399


>gi|85374206|ref|YP_458268.1| putative RNA methyltransferase [Erythrobacter litoralis HTCC2594]
 gi|84787289|gb|ABC63471.1| putative RNA methyltransferase [Erythrobacter litoralis HTCC2594]
          Length = 402

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 116/332 (34%), Gaps = 29/332 (8%)

Query: 39  EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98
            P   R RA  H    G  +     + ++   + +         + AL+  +   +    
Sbjct: 97  SPPGARRRATLHATRRGKTILLGYREGRSHTIIDLKECPVLQPTLFALVDPLRKLLAGWE 156

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
                   +D   +Q DQ +   I  + +     +    L D           +      
Sbjct: 157 GR----VAVDIELTQVDQGVACGI--KGIRAENLQQTEALLDFARENALARLTVDDGLGP 210

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
           +   +     E  TV+   +       +F Q        ++        G    + +L+ 
Sbjct: 211 ETVWE----PEPSTVSLGGVPVVFPPGAFLQATEDGQATLVAAASEWLAGHSP-VADLFA 265

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G F+L LA   ++VLA E ++ +  A R     +     K V    ++         E
Sbjct: 266 GLGTFALSLAGP-EKVLAAEASRGAHLACRQAARLSG----KPVFAQHRDLFHNPYSAEE 320

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-S 336
            ++L            + +DPPR+G  +    + Q+    ++YISCNP S  +D   L  
Sbjct: 321 ISKLA----------AVLLDPPRAGAREQVEQIAQSSVGRVVYISCNPASWAKDAKRLVD 370

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
               ++ +    QF ++ H+E   L VR PSG
Sbjct: 371 AGFELKEVRPVGQFRWSTHVELASLFVR-PSG 401


>gi|154248084|ref|YP_001419042.1| putative RNA methyltransferase [Xanthobacter autotrophicus Py2]
 gi|154162169|gb|ABS69385.1| putative RNA methyltransferase [Xanthobacter autotrophicus Py2]
          Length = 408

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 129/371 (34%), Gaps = 39/371 (10%)

Query: 2   SGTLL----IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHY--RMRAEFHIWHDG 55
            G LL    ++ Y    A K   + + +    +   ++      H   R R  FH    G
Sbjct: 68  GGCLLQHWQLEPY---FAWKRALVVEALARENI-EAEVRPLVDAHGAGRRRVIFHARQYG 123

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                   ++++   + ++     +  ++  +    A       L+  L      T    
Sbjct: 124 ARTVVGFAERKSHAMVALEACPVLAPSLDLALPAARAVAAALAPLKKPLDLQVVATDTGL 183

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
              V       L  +       L +     +            ++ L R      +  A 
Sbjct: 184 DMDVR--GSGPLPPSLLAEVAVLAERFGLARLT-------RHGELVLQRVAPILSMGRAK 234

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
             L       +F Q  A     + E VL AT+G +  + +L+ G G F+L LA H  RV 
Sbjct: 235 VEL----PPAAFLQATAEGERVLAEAVLTATQGAR-KVADLFAGAGTFALRLAEHA-RVF 288

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           A E    ++  A    A+   + +K V   +++     RR      L         F  +
Sbjct: 289 AAESHAGAL--AALTKASRTTSGLKAVDGEARDL---FRRPLMAAELAA-------FDAV 336

Query: 296 FVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
            +DPPR G +     + QA    ++Y+SCN  +  RD  +L +    +  +   DQF Y+
Sbjct: 337 VIDPPRQGAEAQARELAQAKLARVVYVSCNVATFARDARLLVAGGFRLGAVTPVDQFRYS 396

Query: 354 RHMECGVLLVR 364
            H+E      R
Sbjct: 397 PHVELVATFER 407


>gi|325981486|ref|YP_004293888.1| (Uracil-5)-methyltransferase [Nitrosomonas sp. AL212]
 gi|325531005|gb|ADZ25726.1| (Uracil-5)-methyltransferase [Nitrosomonas sp. AL212]
          Length = 388

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 123/375 (32%), Gaps = 88/375 (23%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEP----IHYRMRAEFHIWHDG 55
               +I  Y  QL +K +R    M    F    L I    P      YR R +       
Sbjct: 84  GCPWMIADYTSQLEQKRNRFIYAMKRVGFDTTQLTINSVHPAPQSYGYRNRCQLKT---- 139

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D +      + + + + I   +    ++N     ++ T+  +      L   ++      
Sbjct: 140 DGVQLGFVSENSYQIVPIKDCI----VLNDTCRNLLKTVIQQ------LPNANW------ 183

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
                      +D+      I L D + A +  I                          
Sbjct: 184 ----------QIDNDQNWNFIELDDDMRANEILINQKRP--------------------- 212

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAA--TKGIQGDLLELYCGNGNFSLVLAR-HFD 232
                      F Q N   N  M  W+     +    G ++EL+CG+GN + ++A  +  
Sbjct: 213 -----------FKQGNTSQNAWMQSWLKEKLVSTSCSGKVVELFCGSGNLTQIIAESNCT 261

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            ++A+E    +++     +   + +          +         +    K +       
Sbjct: 262 SIIALESDDNAIQQ----LKTRNFD----------KVIPQKYNLFDPLVWKKLQQKINDA 307

Query: 293 KTIFVDPPRSGL--DDATVGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQ 349
           K + +DPPR+GL   +      +    I+Y SCNP++  RD          I+ + L D 
Sbjct: 308 KILVLDPPRAGLKKHNGFFNGFRTLKTIIYFSCNPETFARDAWFFYQNGFLIDEIQLIDL 367

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H+E   +  R
Sbjct: 368 FPHTHHVEILAVFNR 382


>gi|13476218|ref|NP_107788.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
 gi|50401654|sp|Q985X9|Y7480_RHILO RecName: Full=Uncharacterized RNA methyltransferase mlr7480
 gi|14026978|dbj|BAB53574.1| RNA methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 412

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 123/367 (33%), Gaps = 34/367 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
              L   + E     K D++   +        ++    P H R R           +   
Sbjct: 70  GCALQHFEAEAYRQWKRDKVVHALKGIDCSIDELVACAP-HTRRRVVLAARRSETGMLLG 128

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
                + E + I         I A +  + A   L             +T       V  
Sbjct: 129 FNRHLSPEIISISECPISLPEIVAALDRLRALADLICATTKSFRMAVTVTGSGLDVAV-- 186

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLTVAGRTLI 179
                L +             H R+     +      ++ +D + + E  +  V   ++ 
Sbjct: 187 YESGKLGE-------------HQRRIASNFVLAQGFARLSIDDEIIIEPRKPVVMFGSVA 233

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
                 +F Q        M E ++         + +L+ G G+F+L LA     V AVE 
Sbjct: 234 VAVPPGAFLQATEAAEQAMAE-IVGTHLKRAKKVADLFAGCGSFALRLAAK-SEVHAVEG 291

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              ++ A            +K V    ++     RR   F  L         F  +  DP
Sbjct: 292 DAAALSALDRGARF--ATGLKRVTGERRDL---FRRPLTFKEL-------NTFDGLVFDP 339

Query: 300 PRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           PR+G +D +  + ++  P +  +SCNP +L RDL IL    + ++ +   DQF ++ H+E
Sbjct: 340 PRAGAEDQSKQIARSDVPFVAAVSCNPVTLARDLRILIDGGYQVKSVTPIDQFLWSSHVE 399

Query: 358 CGVLLVR 364
              LL +
Sbjct: 400 AVALLDK 406


>gi|83945409|ref|ZP_00957757.1| possible hypothetical RNA methyltransferase [Oceanicaulis
           alexandrii HTCC2633]
 gi|83851243|gb|EAP89100.1| possible hypothetical RNA methyltransferase [Oceanicaulis
           alexandrii HTCC2633]
          Length = 423

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 117/330 (35%), Gaps = 36/330 (10%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R   H    G  L     ++   + + I      +  + A +  +             
Sbjct: 122 RRRMTLHAQRFGAKLVVGFAERAGDKIVDITDCPVSTPGLRASVPGLRKLA--------- 172

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
               +  T +  +  + ++      D   +    +  AL  R+   +L G+ N T++ + 
Sbjct: 173 ----EVATPKKGRIDIHVLDCEPGLDVSIQGVKEISLAL--REAGAELAGKYNWTRVTIG 226

Query: 164 RDYVDERL--TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELY 217
            D + E     V             F Q  A     +  +V  A K ++G       +L+
Sbjct: 227 GDPLIEFEAPVVKFGDTKVTPAPGGFLQATAEGEAILAGFVDEAVKSLEGKGPFKAADLF 286

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G G F+L LAR    VLAVE     + A +          +K V    ++        +
Sbjct: 287 AGAGAFALRLART-MPVLAVEGESGLLHALQRAAQR--TPGLKPVDARVRDLALEPITPK 343

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL- 335
           E             +  + +DPPR+G       +     P I+ ISCNP +  RD +IL 
Sbjct: 344 ELE----------GYSLVVIDPPRAGAKAQAERLSDSMVPVIVSISCNPATFARDAAILI 393

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVRK 365
              + +  +   DQF +T H+E   +  R+
Sbjct: 394 EGGYRMGPVTPVDQFKWTGHVESVAVFRRR 423


>gi|148259549|ref|YP_001233676.1| (Uracil-5)-methyltransferase [Acidiphilium cryptum JF-5]
 gi|146401230|gb|ABQ29757.1| 23S rRNA m(5)U-1939 methyltransferase [Acidiphilium cryptum JF-5]
          Length = 362

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 132/344 (38%), Gaps = 37/344 (10%)

Query: 27  AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL 86
            F  P+     S P+  R RA+F +      +     + +++  + I         + AL
Sbjct: 46  GFADPHPAPVVSIPMGTRRRADFAVARVAGAVRLGFHETRSRTVVDIAECPLLRPELEAL 105

Query: 87  MIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
           +  + A + RL+ L ++   +++ L + +D ++       L  +A      RL       
Sbjct: 106 IDPLRALLARLQGLRKSADVRVNLLDAGADVSVA------LDGEATAADRARLVAFAQEH 159

Query: 146 KYQIQLIGRANKTKICLDRDYVDERL--TVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
                        +I L  + V  R   T+    L+      +F QP+      +   VL
Sbjct: 160 DLP----------RISLGAEPVLIRRPPTLDCAGLVVLPPPAAFLQPSFEGEAAIRAAVL 209

Query: 204 AATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A        +  ++ELY G G  +  LA H  RV AVE + P++ A              
Sbjct: 210 AGLPPKLTRKSRIVELYAGIGTLTGALAAHA-RVHAVEGSAPALAALDEAARTGGQAG-- 266

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHIL 319
             R+ ++         R+  R             + +DPP  G       +V+A    I+
Sbjct: 267 --RIDTE--------RRDLARRPVTAKELAGAACVVLDPPFDGAGPQIAPLVEAKVQRIV 316

Query: 320 YISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           Y+SCNP++L R+ +  +   + +      DQFP + H+E  V+L
Sbjct: 317 YVSCNPEALAREAAPFARAGYRLLASTPIDQFPGSDHLESVVVL 360


>gi|126323102|ref|XP_001372851.1| PREDICTED: similar to CXorf34 protein [Monodelphis domestica]
          Length = 490

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 130/432 (30%), Gaps = 90/432 (20%)

Query: 9   QYEQQLAEKVDRLRQMMLAF---------QVPNLQIFRSEPI--------------HYRM 45
            YE+QL  K + L++ +             VP      S+ +               YR 
Sbjct: 73  NYEEQLKVKFESLKKNLETLETRLRKIGAGVPEPSAAESKRLCSLLHPFIPSPVIDGYRN 132

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRL 96
           ++ F I    D       Y++     +     +   +         I       +   +L
Sbjct: 133 KSSFCINRGPDGNSETVGYYLKSWGGSNIFCVQPSHLKDIPEKHNQIAQCFELFLQQSKL 192

Query: 97  EPLLRA----KLFQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIRLRDALHARKYQI- 149
              + +       ++   T+     +V +I++   L  + +      +++        + 
Sbjct: 193 SSYIDSQKGGLWHELIVRTTFLGHTMVIIIFNPQELSQEEFCVQKEEIKEFFSTGPGSVC 252

Query: 150 ----------------QLIGRANKT-----KICLDRDYVDERLTVAGRTLIYRQIENSFT 188
                            +            ++     Y+ E +      L +R    +F 
Sbjct: 253 DLTSLYVKERVLFSSSSITRTPRHQELTPFQLLAGEPYLFEEIL----GLKFRISPGAFF 308

Query: 189 QPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q N      +   V    +     + L+   G G   L LAR   +V  + +   ++E A
Sbjct: 309 QLNTSAAEVLYRTVGELGRVDSNTVILDFSHGTGATGLSLARQTSKVFRMGLVGEALEDA 368

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           ++  A N + N +    +  E    +   +E                  VDP + GL + 
Sbjct: 369 KWTAAFNGITNWEFCPGNVNEIMSQILESQE----------DGCSFMALVDPSQCGLSNR 418

Query: 308 TVGMVQAYPHI---LYISCNP--------DSLCRDLS----ILSTTHTIERLALFDQFPY 352
            V  ++    I   +++SC P          LCR       +L     + +    D FP+
Sbjct: 419 VVQDIRNCKAIQTLVFVSCRPYGKSMENIIELCRPPDPERNLLGEPFVLRQAVPVDMFPH 478

Query: 353 TRHMECGVLLVR 364
           +   E   L  R
Sbjct: 479 SLQCELVFLFTR 490


>gi|239787374|emb|CAX83850.1| SAM-dependent methyltransferase related to tRNA
           (Uracil-5-)-methyltransferase [uncultured bacterium]
          Length = 437

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/362 (19%), Positives = 128/362 (35%), Gaps = 42/362 (11%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--------DGDDLYHIMFDQ 65
           +A K     + +    VP  +I    P+   MR   H             D +      +
Sbjct: 98  VAWKRGIAAEALSRVGVPEERI---APL---MRVSAHTRRRASFAFRRTRDGVLLGFNAR 151

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + + + +         + + +  +   +       A+      LT     A++T     
Sbjct: 152 ASHQLVDVGECPLLHPDLESALPGLRLALNGVLTGDAQGDIALQLTESGLDALITC---- 207

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL--TVAGRTLIYRQI 183
              D   +   R + A+   +  +  I          D + V ER    V    +     
Sbjct: 208 ---DLTLDLFKREKLAVMTEQANLARISWRRHED--DDPEPVSERHAPIVTLGGVAVHLP 262

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
              F QP+      +   V+A   G+ G + +LY G G+FSL LA     V AV+    +
Sbjct: 263 PGVFLQPSREGEAAITAQVMAGLAGLDGPVADLYAGVGSFSLPLA-ACHPVHAVDGHAQA 321

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V A +                      +     R+ ++   +     +F  + +DPPR+G
Sbjct: 322 VAALKQ-------------AGDRIALGRLTTERRDLSKRPLLVHELKKFSGVVIDPPRAG 368

Query: 304 LDDAT--VGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
             +    + M       + +SCNP ++ RDLSIL +    ++ +   DQF +T H+E   
Sbjct: 369 AREQVTELAMAATVQKTVMVSCNPATMARDLSILINKGWRLDSVVPIDQFLWTPHLELTA 428

Query: 361 LL 362
           +L
Sbjct: 429 IL 430


>gi|196234487|ref|ZP_03133312.1| putative RNA methyltransferase [Chthoniobacter flavus Ellin428]
 gi|196221468|gb|EDY16013.1| putative RNA methyltransferase [Chthoniobacter flavus Ellin428]
          Length = 150

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +G L++ Y G G F+  LA  F++V+ +E    +VE+AR +   +       V     E 
Sbjct: 8   KGVLVDAYSGAGLFARALADRFEKVVGIEENFAAVESARRSAQPHESYIAGEVGAHLGEV 67

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS 327
                            +H     T+ +DPP  GL      +V   A   ++Y+SCNP +
Sbjct: 68  L---------------SVHDAAQTTLLLDPPTEGLAARVCDLVLGGAPAEVIYVSCNPAT 112

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L RDL++L +++ +  +   D FP T  +E  V LVRK
Sbjct: 113 LARDLALLRSSYELLSVTPLDMFPQTAEIEVVVHLVRK 150


>gi|260576139|ref|ZP_05844132.1| (Uracil-5)-methyltransferase [Rhodobacter sp. SW2]
 gi|259021619|gb|EEW24922.1| (Uracil-5)-methyltransferase [Rhodobacter sp. SW2]
          Length = 412

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 126/353 (35%), Gaps = 32/353 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K+  +R  +    +      I  S P   R RA                 + +   + 
Sbjct: 81  EWKLGVVRSALAGQGIEADLRPIVTSPPRS-RRRATLACRRTKSGALLGFHARASDVLVA 139

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           + +       + A    + A +        +L      +       VT    + LD A R
Sbjct: 140 VPHCQLLHPDLIAAFPALEALVITGGSRSGELALTVTRSLSGPDVAVT--GGKPLDSALR 197

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
               R+ ++    +        A +T            +   GR L+      +F Q  A
Sbjct: 198 LDLARVAESHGLPRLTWDNEVVALRTA----------PMQRFGRALV-SPPPGAFLQATA 246

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +L  V  A  G    +++L+ G G F+L LA +   VLAVE    +      +  
Sbjct: 247 EGEAALLAAVREA-VGEARHIVDLFAGVGTFALPLAENA-EVLAVE--AEAAMMMALDKG 302

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +K V  ++++     RR  E +  K ID        + +DPPR+G +  T  + 
Sbjct: 303 WRQAEGLKRVTATTRDL---FRRPLEPDEFKGIDA-------VVIDPPRAGAEAQTATLA 352

Query: 313 QAY-PHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           +A  P I  +SCNP +  RD   +L+  + ++ +   DQF ++ H+E      
Sbjct: 353 RAQVPVIAAVSCNPVTFARDTRVLLAAGYHLDWVQTVDQFRWSAHVELVARFS 405


>gi|59803122|sp|Q9X3W2|Y1179_ZYMMO RecName: Full=Uncharacterized RNA methyltransferase ZMO1179
          Length = 397

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 122/364 (33%), Gaps = 34/364 (9%)

Query: 9   QYEQQLAEK---VDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           QY  +   K    DR+ +      +    +     S P   R R     +  G  L    
Sbjct: 59  QYADEEVYKNFLTDRIAEAFHQQALSAPVLKTAHLSPPYS-RRRVALRAFKAGKKLTLGY 117

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
               + + + I         +    +++ + ++     R+ L QI+   +      + ++
Sbjct: 118 NKTSSHQLVDIVECPLLDKNLFKAAMDLRSFLQKWLAPRS-LAQIEMTLADQGIDCLLVM 176

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                     E    +      + +    I +    +   +     ER+TV    +    
Sbjct: 177 P----FPETLEATEAITAFAAEKGFARLSIDQGYGVETRWE----SERVTVTLGAVPVTL 228

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             ++F Q        ++  V  A  G    + +L+ G G F+L       RV A E  + 
Sbjct: 229 PAHAFLQATKDGEQTLVHMVKEA-VGDAHFVADLFSGLGTFALSF-EKDKRVYAAEGMRD 286

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V A +   A                        R+  R         RF+ I +DPPR+
Sbjct: 287 AVLALKQAAALAGKA--------------VFVEHRDLFRRPLQKDELVRFECIILDPPRA 332

Query: 303 GLDDATVGM-VQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           G  +    + +     I+Y+SCNP +  RD   +L     +  +    QFP++ H+E   
Sbjct: 333 GAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVGQFPWSLHVEMVG 392

Query: 361 LLVR 364
           L  +
Sbjct: 393 LFTK 396


>gi|39934025|ref|NP_946301.1| putative RNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|51316644|sp|Q6NB80|Y948_RHOPA RecName: Full=Uncharacterized RNA methyltransferase RPA0948
 gi|39647873|emb|CAE26392.1| possible hypothetical RNA methyltransferase [Rhodopseudomonas
           palustris CGA009]
          Length = 412

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/358 (19%), Positives = 128/358 (35%), Gaps = 39/358 (10%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
             K + + + +      VP   +  +     R R   H      D+  + F    + + +
Sbjct: 86  TWKRNLVIETLAQAGIDVPVDPLIDAHGAG-RRRITLHARRGTHDILKVGFSATASHDII 144

Query: 72  RIDYFMPGSLLIN-ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
            ID+       +N AL         L P+ +    Q+   T+  +   + +     L   
Sbjct: 145 GIDHCPILDPGLNGALEAAWALAEALTPVGKPLDIQV---TATENGLDIDVRGSGPLPPK 201

Query: 131 WRECAIRLRDA--LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
                 +L +   L       +L+       + + +  V                  +F 
Sbjct: 202 MITSLSQLAEKHKLARLTRHSELVLLRRPPVVAIGKAKVT-------------LPPGAFL 248

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q    +    L  +  A  G    + +L+CG G F+L LA    RV A +   P+V A +
Sbjct: 249 QA-TALGEQTLAELAMAKLGRAKQVADLFCGVGPFALRLAEKA-RVFACDSDAPAVTALQ 306

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
               A   + +K V+  +++     RR      L+D       F  +  DPPR G     
Sbjct: 307 KAAPA--TSGLKPVKAEARDL---FRRPLAPPELRD-------FDAVLFDPPRQGAQAQA 354

Query: 309 VGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +  +  P ++ +SCN  +  RD  +L    + +ER+   DQF YT H+E   +  +
Sbjct: 355 AQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKYTPHVELVAVFRK 412


>gi|313672911|ref|YP_004051022.1| deoxyribonuclease/rho motif-related tram [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939667|gb|ADR18859.1| deoxyribonuclease/rho motif-related TRAM [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 388

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 129/353 (36%), Gaps = 60/353 (16%)

Query: 17  KVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDY 75
           K   +             +   S    YR+R    +      L++  F+  + E + ID 
Sbjct: 92  KRRIVENSFRNISDFKIDEYVHSNKRDYRVRCRMRLKW--GGLFYKKFN--SNELVSIDE 147

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA-WREC 134
                  I   + ++  +             I  + ++  + ++ L     + D+ +   
Sbjct: 148 CPILKPSILNKLKDVAGSYSDTDC------DISIIENEKGEELIFLDSDIDITDSKYNIK 201

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
           + R +  L + ++ I      NK  I                   YR    SF Q N  +
Sbjct: 202 SKRCQKGLKSIEFNI------NKHTIPAG----------------YR----SFFQTNRYL 235

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
                  V+   KG +  +LE YCG+G F++ L++   +++A++    ++   +      
Sbjct: 236 FESFQRKVVEQLKGYE-TVLEFYCGSGFFTIPLSKEVRKIVAIDQNDEALRLLKQQA--- 291

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-- 312
                      ++     ++        KDI     RF  + V+P R GL    + ++  
Sbjct: 292 --------TGRAEVLNTDLK--------KDIINIKGRFDAVLVNPDRDGLSKGVLKVIMD 335

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           +    I+Y+SCNP ++ RD+      + + +  + DQF  T H+E   +L  +
Sbjct: 336 KKPEIIVYVSCNPQTMSRDIKNFMNRYKMCQFTVVDQFYKTYHIESIAVLTER 388


>gi|42525152|ref|NP_970532.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|51316634|sp|Q6MGU3|Y3828_BDEBA RecName: Full=Uncharacterized RNA methyltransferase Bd3828
 gi|39577363|emb|CAE81186.1| hypothetical RNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
          Length = 393

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 123/369 (33%), Gaps = 96/369 (26%)

Query: 11  EQQLAEKVDRLRQMMLAFQVP---NLQIFRSEP--IHYRMRAEFHIWHDGDDLYHIMFDQ 65
           E+Q  +K   + + +  F      N    +  P  + YR R +        +     F +
Sbjct: 100 EEQRRQKHTLVLETIKKFNRDLEFNYLPIQPSPRVLRYRNRIQPKF----KNGRFGFFAR 155

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + + +                 E M  +  E  L  K  ++                  
Sbjct: 156 NSHQIV-----------------ETMDCLITEETLTDKFAEV------------------ 180

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
               AW E         +A+  Q   +  A +  +          +T     +       
Sbjct: 181 ---KAWAEKK-------NAKDLQRLEMYIAEEGDVRYG------LITDEDDGI------- 217

Query: 186 SFTQPNAGINVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKP 242
            F+Q N   N  +L   L     G    + +LY G GNF+  LA       ++ VE+   
Sbjct: 218 GFSQVNRFQNEDLLRTALDWAGDGPYKKVYDLYAGAGNFTFPLAAKYAGSEIIGVELNPK 277

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            VE AR  I        K +     +    MRR               +   + +DPPR+
Sbjct: 278 LVERARSKITD------KRMTYFMSDVETYMRRASI-----------GKDDLVVLDPPRA 320

Query: 303 GLDDATVGMVQA--YPHILYISCNPDSLCRDL-------SILSTTHTIERLALFDQFPYT 353
           G  + T+  + A     I+YISC+P SL RDL         L   + ++R+  F+ FP T
Sbjct: 321 GASEYTMQTLAAAQPRKIIYISCHPVSLARDLNWFFAQTQKLGIKYKLDRVQTFEMFPQT 380

Query: 354 RHMECGVLL 362
            H+E    L
Sbjct: 381 DHVETIAEL 389


>gi|148272174|ref|YP_001221735.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830104|emb|CAN01033.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 421

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 121/369 (32%), Gaps = 75/369 (20%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIF--------RSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Q   K   +   +      ++ +          S+ + +R R   H+  DG       + 
Sbjct: 106 QRELKRQVVVDSLSRMAHVDMDVKVQALPGDDESDGLGWRTRVSLHVADDG---LVGPYA 162

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            ++   + ++     +  +N           +E         ID +        + LI  
Sbjct: 163 SRSHRVIPVETLPLATAGVNGAAPFGQRFPGVEG--------IDLVAPSDGHVRMLLIDG 214

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           +                                      RD + ER+        ++   
Sbjct: 215 KAQR-----------------------------------RDTITERVHDRE----FKLEA 235

Query: 185 NSFTQPNAGINVHMLEWV----LAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAV 237
             F Q +      + + V      A    +   L+LY G G  +  +   F    R+ +V
Sbjct: 236 GGFWQVHRRAAETLYDAVQSSVDEALFDPRAANLDLYGGVGLLAAAVGDRFGDTVRITSV 295

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E  + + E A  N+A         +      + Q + RE              +  T+ +
Sbjct: 296 ESDEVATEFAGDNLA--EWVGAASLTARVDRYLQNLVREASPAER-----RRLQAATVVL 348

Query: 298 DPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTR 354
           DPPR+G     V  +       ++Y++C+P +L RD+++ +   + +  +  FD FP+T 
Sbjct: 349 DPPRAGAKKPVVDALAELRPAQVVYVACDPVALARDVALFAERGYELRSVRSFDLFPHTH 408

Query: 355 HMECGVLLV 363
           H+E   +LV
Sbjct: 409 HVESVAVLV 417


>gi|192289445|ref|YP_001990050.1| (uracil-5)-methyltransferase [Rhodopseudomonas palustris TIE-1]
 gi|192283194|gb|ACE99574.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris TIE-1]
          Length = 413

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 128/358 (35%), Gaps = 39/358 (10%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
             K + + + +      VP   +  +     R R   H      D+  + F    + + +
Sbjct: 86  TWKRNLVIETLAQAGIDVPVDPLIDAHGAG-RRRITLHARRGTHDILKVGFSATASHDII 144

Query: 72  RIDYFMPGSLLIN-ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
            ID+       +N AL         L P+ +    Q+   T+  +   + +     L   
Sbjct: 145 GIDHCPILDPGLNGALEAAWALAEALTPVGKPLDIQV---TATENGLDIDVRGSGPLPPK 201

Query: 131 WRECAIRLRDA--LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
                 +L +   L       +L+       + + +  V                  +F 
Sbjct: 202 MITSLSQLAEKHKLARLTRHGELVLLRRPPVVAIGKAKVT-------------LPPGAFL 248

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q    +    L  +  A  G    + +L+CG G F L LA    RV A +   P+V A +
Sbjct: 249 QA-TALGEQTLAELAMANLGRAKQVADLFCGVGPFVLRLAEKA-RVFACDSDAPAVTALQ 306

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
               A   + +K V+  +++     RR      L+D       F  +  DPPR G     
Sbjct: 307 KAAPA--TSGLKPVKAEARDL---FRRPLAPPELRD-------FDAVLFDPPRQGAQAQA 354

Query: 309 VGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             +  +  P ++ +SCN  +  RD  +L    + +ER+   DQF YT H+E   +L +
Sbjct: 355 TQLAASRVPLVIAVSCNATTFARDAKLLIDGGYKLERVIPVDQFKYTPHVELVAVLRK 412


>gi|4511979|gb|AAD21539.1| RNA methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 397

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 123/364 (33%), Gaps = 34/364 (9%)

Query: 9   QYEQQLAEK---VDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           QY  +   K    DR+ +      +    +     S P   R R     +  G  L    
Sbjct: 59  QYADEEVYKNFLTDRIAEAFHQQALSAPVLKTAHLSPPYS-RRRVALRAFKAGKKLTLGY 117

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
               + + + I       + +    +++ + ++     R+ L QI+   +      + ++
Sbjct: 118 NKTSSHQLVDIVECPLLDINLFKAAMDLRSFLQKWLAPRS-LAQIEMTLADQGIDCLLVM 176

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                     E    +      + +    I +    +   +     ER+TV    +    
Sbjct: 177 P----FPETLEATEAITAFAAEKGFARLSIDQGYGVETRWE----SERVTVTLGAVPVTL 228

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             ++F Q        ++  V  A  G    + +L+ G G F+L       RV A E  + 
Sbjct: 229 PAHAFLQATKDGEQTLVHMVKEA-VGDAHFVADLFSGLGTFALSF-EKDKRVYAAEGMRD 286

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V A +   A                        R+  R         RF+ I +DPPR+
Sbjct: 287 AVLALKQAAALAGKA--------------VFVEHRDLFRRPLQKDELVRFECIILDPPRA 332

Query: 303 GLDDATVGM-VQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           G  +    + +     I+Y+SCNP +  RD   +L     +  +    QFP++ H+E   
Sbjct: 333 GAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVGQFPWSLHVEMVG 392

Query: 361 LLVR 364
           L  +
Sbjct: 393 LFTK 396


>gi|283856417|ref|YP_162914.2| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|283775417|gb|AAV89803.2| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 384

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 122/364 (33%), Gaps = 34/364 (9%)

Query: 9   QYEQQLAEK---VDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           QY  +   K    DR+ +      +    +     S P   R R     +  G  L    
Sbjct: 46  QYADEEVYKNFLTDRIAEAFHQQALSAPVLKTAHLSPPYS-RRRVALRAFKAGKKLTLGY 104

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
               + + + I         +    +++ + ++     R+ L QI+   +      + ++
Sbjct: 105 NKTSSHQLVDIVECPLLDKNLFKAAMDLRSFLQKWLAPRS-LAQIEMTLADQGIDCLLVM 163

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                     E    +      + +    I +    +   +     ER+TV    +    
Sbjct: 164 P----FPETLEATEAITAFAAEKGFARLSIDQGYGVETRWE----SERVTVTLGAVPVTL 215

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             ++F Q        ++  V  A  G    + +L+ G G F+L       RV A E  + 
Sbjct: 216 PAHAFLQATKDGEQTLVHMVKEA-VGDAHFVADLFSGLGTFALSF-EKDKRVYAAEGMRD 273

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V A +   A                        R+  R         RF+ I +DPPR+
Sbjct: 274 AVLALKQAAALAGKA--------------VFVEHRDLFRRPLQKDELVRFECIILDPPRA 319

Query: 303 GLDDATVGM-VQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           G  +    + +     I+Y+SCNP +  RD   +L     +  +    QFP++ H+E   
Sbjct: 320 GAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVGQFPWSLHVEMVG 379

Query: 361 LLVR 364
           L  +
Sbjct: 380 LFTK 383


>gi|84500744|ref|ZP_00998993.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola batsensis
           HTCC2597]
 gi|84391697|gb|EAQ04029.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Oceanicola batsensis
           HTCC2597]
          Length = 405

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 114/329 (34%), Gaps = 30/329 (9%)

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT 93
           ++  S P   R RA                 + ++  + I   +    L+   +  +   
Sbjct: 100 EVVTSPPQS-RRRATLSARRTKSGAIAGFHGRASRTIVAIPDCLLLEPLLMQGLP-VAEA 157

Query: 94  IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIG 153
           +      R     +  + S+S   I             +     L   L     +  L  
Sbjct: 158 LARIGSSRKGEISVAAMASESGLDIAVT--------GGKPFDAALGVPLAEEAERSDLAR 209

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
            +   +I + R      L+     ++      +F Q        +   V   T G +  +
Sbjct: 210 LSWDGEIVVTRR--PPILSFGAARVV--PPPGAFLQATRAGEAALQGAVAGITSGAR-RV 264

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +L+ G G F+L LA     V+AVE  +  +EA            +K +   +++  +  
Sbjct: 265 ADLFAGIGTFALPLAET-SEVVAVEGDRAMMEALDR--GWRGTQGLKKIETVTRDLFRNP 321

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDL 332
               E             F  + +DPPR+G +     +  A  P I ++SCNP +  RD 
Sbjct: 322 LLADELR----------HFDAVVIDPPRAGAEAQVAELADAGVPVIAHVSCNPVTFARDA 371

Query: 333 SIL-STTHTIERLALFDQFPYTRHMECGV 360
           + L ++ + +  + + DQF ++ H+E   
Sbjct: 372 ARLVASGYRMGPVTVVDQFRWSAHVELVA 400


>gi|319403929|emb|CBI77517.1| putative enzyme [Bartonella rochalimae ATCC BAA-1498]
          Length = 417

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 134/372 (36%), Gaps = 32/372 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHY-RMRAEFHIWHDGDDLYH 60
              L    ++   + K   +      + +  +     E  +Y R +          +   
Sbjct: 70  GCMLQHWHFDAYRSWKRQLVVDAFKRYGLDAVISPLIECGNYTRRQVTLTASVIQKNHIV 129

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI-V 119
                ++ + + I         I   + ++     +  LLR    +     +  +    V
Sbjct: 130 GFNRYRSPDIIAIKECPVTRSEI---LSKLDDIRVICALLRNNAKRFHVTVTAVENGFDV 186

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L    + ++  R+  IR+  +    +  I       + ++ +++    E+  +    + 
Sbjct: 187 ALSNCVVQNEFTRQKMIRVALSCGITRLSI-------EGEVLVEQ----EKPVIHFGDVC 235

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
                  F Q        M E ++ A      +  +L+ G G F+L +A+  + V A+E 
Sbjct: 236 VEFPIGGFLQATFEAETVMGE-IILAHLKKAKNAADLFAGVGTFTLRMAKKMN-VHAIEN 293

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +            + N+      +      +  +R+  R          F ++  DP
Sbjct: 294 NGEA------------LANLDQAARIATGLKTVVCEKRDLFRRPLSAKELECFDSVVFDP 341

Query: 300 PRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           PRSG ++    + +     ++ +SCNP +L RDLS+L +  + IE++   DQF ++ H+E
Sbjct: 342 PRSGAEEQVNELDKTTVARVVAVSCNPITLARDLSLLVAGGYIIEKVVSIDQFLWSPHIE 401

Query: 358 CGVLLVRKPSGW 369
               L ++ +  
Sbjct: 402 IVATLRKQKTKK 413


>gi|66358588|ref|XP_626472.1| TrmA RNA methylase [Cryptosporidium parvum Iowa II]
 gi|46227986|gb|EAK88906.1| TrmA RNA methylase [Cryptosporidium parvum Iowa II]
          Length = 550

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 145/452 (32%), Gaps = 113/452 (25%)

Query: 16  EKVDRLRQMMLAFQV-------PNLQIFRSE----PIHYRMRAEFHIWHDGDDLYHIMFD 64
           EK +R+                P + I   +    P  YR + EF I +  +++     D
Sbjct: 82  EKKERMTNSFSLVDFEGLIQAFPIVSIKDEDKGTIPYSYRNKYEFTIGYTNNEILDADSD 141

Query: 65  QQTKERMRIDYFMPGS--LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
                   ID F P +  +L N+  ++    I+    L      I  +  ++++ +    
Sbjct: 142 ISVGFVAYIDRFEPITIGVLDNSNEVDNSNDIQDTKTLEIINPCIIPIIKKTEKMVKMSS 201

Query: 123 YH--------RLLDDAWRECAIRLRDALHARKYQIQLIGRAN---KTKIC-------LDR 164
                     R     WR   IRL +        IQ         K KI        +D+
Sbjct: 202 RESDFKVYSRRNRSGIWRLLLIRLSETNKEIMVTIQTTNVERIGVKNKIVDLLIEEFIDK 261

Query: 165 DYVDERLTVAGRTLIYRQI---------------------------------ENSFTQPN 191
            +  + +    ++L   Q                                    SF Q N
Sbjct: 262 SFEMDLIGYKIKSLYLHQSDSIVDTFDIGKLDLLHGSPQISFKIRNTELFIGPLSFFQTN 321

Query: 192 AGINVHMLEWVLA--------------ATKGIQGDLLELYCGNGNFSLVL-------ARH 230
                 +   +                  K  +  +L++ CG G   L L        R+
Sbjct: 322 TKGCETLYNEIRKVIEIKLLENLKKNENLKKKKLIILDICCGVGAIGLTLLDIFRDLGRN 381

Query: 231 FDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           F  V  + ++ ++ ++ +A+ N     V N K    +++            N L      
Sbjct: 382 FKDVELIGIDCSREAINSAKKNAENIGVENAKYYTGTAESILPGFLENLPSNNL------ 435

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHTI---- 341
                   VDPPRSGL  + V  ++    I   +Y+SCN +SL ++   L +++      
Sbjct: 436 ----VIAIVDPPRSGLHSSVVKSLRKMAKIEYLIYVSCNVESLVKNCIELCSSYDPHTDQ 491

Query: 342 ---------ERLALFDQFPYTRHMECGVLLVR 364
                    E     D FP+T+H+E  + L R
Sbjct: 492 QEYFPVFFPECAVPVDMFPFTKHVETILYLKR 523


>gi|329895829|ref|ZP_08271185.1| hypothetical RNA methyltransferase [gamma proteobacterium IMCC3088]
 gi|328922124|gb|EGG29482.1| hypothetical RNA methyltransferase [gamma proteobacterium IMCC3088]
          Length = 390

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 127/370 (34%), Gaps = 86/370 (23%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV--PNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
               +   Y  Q+  K  R+ +M     +  P       + + YR RA+     D     
Sbjct: 101 GCPWMFIDYAAQVYAKQRRVEEMCSRLGLDCPGTIQASPQELAYRNRAQLKASADA---- 156

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                 ++ + + ++  +  S   NAL+              A++ + D    +  +  V
Sbjct: 157 LGFVAARSDQIVDVEQCVVLSDHNNALL--------------ARIREQDLGIGRRRKTWV 202

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+     +D        RL                                         
Sbjct: 203 TIDIADEVDFEHISFNQRL----------------------------------------P 222

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVL-ARHFDRVLAV 237
           +R       Q N   N  ML W+     G+     LEL+ G+GN +  L A   D +  V
Sbjct: 223 FR-------QGNTAQNQEMLGWLTKVLHGLNCKRALELFAGSGNLTQALVASGVDDITVV 275

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E+   +++  R +     + + K   +   + T          +L ++   S   + + +
Sbjct: 276 EVVPEALDTLRQS-----LPSTKAFALDLFDKT----------KLSELVSLSADAELLLL 320

Query: 298 DPPRSG--LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355
           DPPR G  L    V  + +   I+YISC+  S  RD+++L    ++  L   D +P T H
Sbjct: 321 DPPRDGFALLGQLVSQLPSLKSIIYISCDLASFERDVALLCDEFSLLELQPLDMYPQTPH 380

Query: 356 MECGVLLVRK 365
           +E   +  RK
Sbjct: 381 VELMSVWSRK 390


>gi|237836119|ref|XP_002367357.1| hypothetical protein TGME49_050750 [Toxoplasma gondii ME49]
 gi|211965021|gb|EEB00217.1| hypothetical protein TGME49_050750 [Toxoplasma gondii ME49]
 gi|221505959|gb|EEE31594.1| RNA m5u methyltransferase, putative [Toxoplasma gondii VEG]
          Length = 1116

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 90/268 (33%), Gaps = 57/268 (21%)

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            L         I  A+ T+     D+    LT     L +    +SF Q N      + +
Sbjct: 711 FLEESDAAADCIDPAHPTEKIWGADF----LTQKVAGLDFSVGPHSFFQTNTVTCGLLYQ 766

Query: 201 WVLAATKGIQGD--LLELYCGNGNFSL-----------------VLA------------- 228
             L     +  D   +++  G G  +L                   A             
Sbjct: 767 TALNYVWPLPRDTPFVDVCSGTGTIALCAAAALLEETGERRVETPKATEESGERDTERGN 826

Query: 229 -RHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
              F RV+ +E+ + +V  A+ N   NH    V  +   +++    + ++R         
Sbjct: 827 EPSFPRVVGIEMVEEAVRHAKENADRNHMAKYVDFICGKAEDVLPQLLQDR--------- 877

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILST------ 337
                     VDPPR+GL    +  +   Q    ++Y+SCNP S+  +   L T      
Sbjct: 878 YRGCTNLAAIVDPPRAGLHSRVLDAILDFQPIKRLVYVSCNPTSMVANCIKLCTPSPSNR 937

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364
                 +    D FP+T H E  +LL R
Sbjct: 938 DPFVPMQAVAVDMFPHTLHCEGVLLLCR 965


>gi|54025714|ref|YP_119956.1| putative RNA methyltransferase [Nocardia farcinica IFM 10152]
 gi|54017222|dbj|BAD58592.1| putative ribosomal RNA large subunit methyltransferase [Nocardia
           farcinica IFM 10152]
          Length = 430

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/193 (26%), Positives = 75/193 (38%), Gaps = 22/193 (11%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RV 234
            +      F Q +        + V    +   G+   +LY G G F+  LA        V
Sbjct: 253 RWEISATGFWQAHRLAAQCYSDLVAEWAELAAGERAWDLYSGAGVFAARLAEQAGPDGAV 312

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           LAVE A+P+V   R   A   +  V               R     R       +   + 
Sbjct: 313 LAVESARPAVADGR--AALRDLPWVD-------------LRAARVERWAGEHARTAPPRV 357

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351
           + +DPPR+G     V  V A     I++I C+P S  RD+ +     + +  L +FD FP
Sbjct: 358 VVLDPPRAGAGKEVVAAVTAAGPERIVHIGCDPASFARDIGLYHHGGYRLAGLRVFDAFP 417

Query: 352 YTRHMECGVLLVR 364
            T HMEC  LL R
Sbjct: 418 GTHHMECVALLTR 430


>gi|221484988|gb|EEE23278.1| RNA m5u methyltransferase, putative [Toxoplasma gondii GT1]
          Length = 1116

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 90/268 (33%), Gaps = 57/268 (21%)

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            L         I  A+ T+     D+    LT     L +    +SF Q N      + +
Sbjct: 711 FLEESDAAADCIDPAHPTEKIWGADF----LTQKVAGLDFSVGPHSFFQTNTVTCGLLYQ 766

Query: 201 WVLAATKGIQGD--LLELYCGNGNFSL-----------------VLA------------- 228
             L     +  D   +++  G G  +L                   A             
Sbjct: 767 TALNYVWPLPRDTPFVDVCSGTGTIALCAAAALLEETGERRVETPKATEESGERDTERGN 826

Query: 229 -RHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
              F RV+ +E+ + +V  A+ N   NH    V  +   +++    + ++R         
Sbjct: 827 EPSFPRVVGIEMVEEAVRHAKENADRNHMAKYVDFICGKAEDVLPQLLQDR--------- 877

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMV---QAYPHILYISCNPDSLCRDLSILST------ 337
                     VDPPR+GL    +  +   Q    ++Y+SCNP S+  +   L T      
Sbjct: 878 YRGCTNLAAIVDPPRAGLHSRVLDAILDFQPIKRLVYVSCNPTSMVANCIKLCTPSPSNR 937

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364
                 +    D FP+T H E  +LL R
Sbjct: 938 DPFVPMQAVAVDMFPHTLHCEGVLLLCR 965


>gi|261415209|ref|YP_003248892.1| (Uracil-5)-methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371665|gb|ACX74410.1| (Uracil-5)-methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328173|gb|ADL27374.1| tRNA (uracil-5-)-methyltransferase family protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 386

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/391 (17%), Positives = 130/391 (33%), Gaps = 54/391 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQ-----MMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             TL    Y+ +L  K + +R+      +     P   +    P +YR  ++  +     
Sbjct: 23  GETLAPLDYKDELKVKNEAIREFWEVNRLAR--GPQPIVASPMPRNYRTTSKRQVEMKPG 80

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
           DL    +D                   +  +  ++    + P  +   + +++L  +   
Sbjct: 81  DLRFNEYDS------------ILEPEEHNAIYRLLFDKLITPAYKPLAYALNWLIIRGTY 128

Query: 117 AI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR-------------ANKTKIC- 161
              + +   + LD +      ++ + L    Y +                     T    
Sbjct: 129 KYRIVIFNVKKLDASIVRKLKQISEVLQQSPYHVTAAHAYVDPTGSNYYLEAKRPTDTLN 188

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
             + Y    L++       +     F+Q N     ++++         +GD  L+LYCG 
Sbjct: 189 FKQLYGPRELSLDLGHFRLKYPVTGFSQINESQIHNLIKSASRLLGLEKGDHFLDLYCGY 248

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G FS  L      VL VE   PS++ A+ +       N K +     E    MR  R   
Sbjct: 249 GLFSFALGEAAKSVLGVEWEGPSIDCAKASARFLK-KNYKFIAGKIDETFVQMRLPRPIP 307

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCN----PDSLCRDLSI 334
                       + I +DPPR G +   +  +       +L+I C     P +L      
Sbjct: 308 ---------GEPERILLDPPRKGTEPGVIRALAMRKPVRVLHIFCGTDEIPAALA---EW 355

Query: 335 LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
               + ++ +   D FP T H+E  V L +K
Sbjct: 356 ERYGYRVKEVLPMDLFPGTPHLETLVALEKK 386


>gi|294101532|ref|YP_003553390.1| (uracil-5)-methyltransferase [Aminobacterium colombiense DSM 12261]
 gi|293616512|gb|ADE56666.1| (uracil-5)-methyltransferase [Aminobacterium colombiense DSM 12261]
          Length = 365

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 128/373 (34%), Gaps = 39/373 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP---IHYRMRAEFHIWHDGDDLYHI 61
           +  ++ E+Q   K   L+Q +  +      I    P     YR +       +  D    
Sbjct: 20  MTHEESEKQ---KEAWLKQSLHQWSHLINPILSPAPEQRWGYRNKVSLAAQWNSSDWVFG 76

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           M  +   E + +      S  +   +  +   +   P     LF +        Q  + L
Sbjct: 77  M--KVKDEIISLKECPIHSEGVRLTLSWLEQYLPPFP-----LFPLSIYVQAGRQGTLIL 129

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD----ERLTVAGRT 177
             H   D  W +               + +   A   +    R        +  +     
Sbjct: 130 KTHETPDLNWLKYKQEALAQTGLEGLWLHMHPSAG--RRLFGRGAWQLLWGKPRSYNELG 187

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLA 236
           LIY     +F Q    +    L+   A     + + +++LYCG+G             + 
Sbjct: 188 LIY--GPTAFQQLIPDLYARSLDEAEAFLSPKEKEGVIDLYCGSGASLKRWIGKGCHTVG 245

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE +  ++E+A  N          ++R +  +    + +  E     +        +  +
Sbjct: 246 VETSAEAIESAGSNA-----PGALLLRGTCSQRIPQLAQWIETIEGYE--------RLAY 292

Query: 297 VDPPRSGLDDATVGMV--QAYP-HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352
           ++PPR+G++      +  +A P  I Y+SC+  +L RDL  +    + I+ +  +D FP 
Sbjct: 293 LNPPRTGIESDVRQWLALKARPSRIAYLSCSAGTLGRDLLYMEKEGYKIKHITPYDFFPN 352

Query: 353 TRHMECGVLLVRK 365
           T H+E    L  K
Sbjct: 353 TYHVETLACLSLK 365


>gi|154251239|ref|YP_001412063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parvibaculum
           lavamentivorans DS-1]
 gi|154155189|gb|ABS62406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parvibaculum
           lavamentivorans DS-1]
          Length = 415

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 107/320 (33%), Gaps = 30/320 (9%)

Query: 49  FHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID 108
           F        L    + Q +   + I         I   +  +   +   P L        
Sbjct: 121 FAATRTKKTLAIGYYAQASHTIVPIAECPLVVPEIERALPALAGLVA--PGLSRTSRASV 178

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR--DY 166
            +TS +    V +   + LD         LR  L AR     +   +   +I   R   +
Sbjct: 179 LVTSTASGLDVAVTGGKPLDGP-------LRLELAARASAADIARLSWGGEIVAGRRPPF 231

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           VD         L       +F QP       ++  ++A   G    + +L+ G G FS  
Sbjct: 232 VD------LSGLAVLPPPGAFLQPTREGEAALV-RLVAQGVGKSVRIADLFAGCGTFSAS 284

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LAR    V AVE    S+ A    +           +  S          R+  R   + 
Sbjct: 285 LARSA-TVHAVEGESASLAALARAVRE---------QGPSLGLKPVTHETRDLARRPLLR 334

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLS-ILSTTHTIERL 344
                F  +  DPPR+G       + ++  P +  +SCNP +  RD   +L   + +  L
Sbjct: 335 SELDSFDAVVFDPPRAGAAAQAEEIARSEVPVVAAVSCNPATFARDARTLLDGGYALSEL 394

Query: 345 ALFDQFPYTRHMECGVLLVR 364
              DQF ++ H+E   +  +
Sbjct: 395 TPVDQFLWSPHIELVGIFRK 414


>gi|294675748|ref|YP_003576363.1| tRNA (Uracil-5-)-methyltransferase family protein [Rhodobacter
           capsulatus SB 1003]
 gi|294474568|gb|ADE83956.1| tRNA (Uracil-5-)-methyltransferase family protein [Rhodobacter
           capsulatus SB 1003]
          Length = 407

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 120/352 (34%), Gaps = 30/352 (8%)

Query: 16  EKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            K   +   +    +   +    + P   R RA F               + +   + + 
Sbjct: 82  WKAQVVETALAGRGIAARVARVETSPEFSRRRATFSGRRTKKGTLVGFHARASDTVVEVP 141

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
                   + A++  + A        + ++     L+    +  +     + +D A  + 
Sbjct: 142 QCRILRPELLAVLPALNAMTAAGASRKGEVAFAVTLSEAGLE--IAARGGKEMDPALFQT 199

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
              L +A    +   +    A +      + +   R+              +F Q  A  
Sbjct: 200 LAGLAEAHDFARLSWEAETVAARRPAL--QSFGAARVNP---------PPGAFLQATAAG 248

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              ++++V  AT+G    + +L+ G G F+L LA     V AVE     +  A  +    
Sbjct: 249 EAALVDFVRKATEG-AARIADLFAGCGTFALPLAATA-EVHAVESEAAML--AALDWGWR 304

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
               +K +   +++  +      E +R          F  + +DPPR+G +     +  +
Sbjct: 305 QAQGLKRLTHEARDLFRRPLLPDEIDR----------FDAVVIDPPRAGAEAQVAEIAAS 354

Query: 315 YPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
               + Y+SCNP +  RD   L      +  + + DQF Y+ H+E      R
Sbjct: 355 SLRDLTYVSCNPVTFARDAERLVQAGFALADVIVVDQFRYSAHIELAARFRR 406


>gi|162148821|ref|YP_001603282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545431|ref|YP_002277660.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787398|emb|CAP56993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533108|gb|ACI53045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 426

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 133/375 (35%), Gaps = 35/375 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
              +        L  K   +   +    F  P +      P   R R +  +    + + 
Sbjct: 72  GCAIQHLSLAAALDWKAGLVVHALERAGFAAPAITGTVQSPPGSRRRIDLAVRRRPEGVC 131

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA-KLFQIDYLTSQSDQAI 118
             +  ++  + + +         + AL+  + A ++    LR      I+ L S  D  +
Sbjct: 132 IGLHARRG-DVVDLTACPVLEPALFALLPALRAVMQSLGALRRDGDALINMLDSGPDLLL 190

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-KTKICLDRDYVDERLTVAGRT 177
            T        D   E A R + A  AR ++I  I      T    +       +      
Sbjct: 191 AT--------DGPLEAADRAKLASFARDHRIPRIAWRRAGTTDVPETAAQTASVRHELSG 242

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLA---ATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
           +       +F QP       ++  VLA        +  ++ELY G G  S  L +H  R 
Sbjct: 243 VATMPPPGAFLQPTREGEAAIIAAVLAGLPRRLVRKDTVIELYAGCGTLSFALGQHV-RT 301

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           LA E    +V   R                 +   T+ +  +R+ NR   +       + 
Sbjct: 302 LAFEGQPDAVATLRR----------------ATTGTRVVAEQRDLNRQPVMARQIADARA 345

Query: 295 IFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPP +G       +V   P  I+Y+SCNP +L RD + L +  + ++ + + DQF +
Sbjct: 346 VVLDPPYTGAGAQMAEIVAGRPERIVYVSCNPQALGRDAAGLQAAGYRLDGVTIIDQFLW 405

Query: 353 TRHMECGVLLVRKPS 367
           +  +E   +    P+
Sbjct: 406 STEVEAVCVFTAPPA 420


>gi|281201614|gb|EFA75823.1| Dyp-type peroxidase family protein [Polysphondylium pallidum PN500]
          Length = 817

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 141/363 (38%), Gaps = 42/363 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ--------VPNLQIFRSE------PIHYRMRA 47
              L+  ++  Q+  K  +L ++             + +  + + E         YR RA
Sbjct: 142 GCPLMHMKHSHQIQHKYQQLAKLYRDSGIIINDDSNLLDSNVIKDENGDTNGQFGYRRRA 201

Query: 48  EFHIWHD-GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM--MATIRLEPLLRAKL 104
            F + +D      ++ ++   K   +++        +  L +++  + T   +  +R KL
Sbjct: 202 RFSVRYDHQSKRVNVGYNSPLKPSFQVNECPILVESVQTLPLKLSDLFTSFEDKQIRDKL 261

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
             ++ LT   +   + + + + ++    E  I    +       +Q     +  ++    
Sbjct: 262 SMVE-LTVADNTTSIIIRHLKSIEQIDIEKIIEFGKSEKNLSIYLQPSNLESIQQLYPQN 320

Query: 165 DYVD-ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGN 222
           + V    L+              F Q N  +N  M++  +      + D + +L+CG+GN
Sbjct: 321 EKVKLYYLSHGDDQRKIEIGPADFIQVNKQVNKLMIDQAIEFLDLNKNDFVYDLFCGSGN 380

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+  +A++  +V+A++ A  S+         N  +NV                   +N  
Sbjct: 381 FTFPIAKYCQQVVAIDYASNSL------AKPNLGDNV---------------VSLNYNLY 419

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPD-SLCRDLSILSTTHTI 341
           +    +  +   I +DPPRSG +     M   +  I+YISC+P  SL RDL IL +   +
Sbjct: 420 EYSIDYDAKCNKILLDPPRSGAEKVCNEMPDNFERIVYISCDPSGSLIRDLKILKSKVVL 479

Query: 342 ERL 344
           + +
Sbjct: 480 KAI 482


>gi|85706915|ref|ZP_01038005.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp. 217]
 gi|85668526|gb|EAQ23397.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp. 217]
          Length = 417

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 123/350 (35%), Gaps = 32/350 (9%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K D +R  +         L I  S P   R RA F               + +   + 
Sbjct: 89  DWKQDLVRSALSAHGITPEFLPIHVSPPQS-RRRATFAAKRTKKGAMAGFHARGSDLIIE 147

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           +       L  + +   ++A+   E     K      +T       V ++  + LD    
Sbjct: 148 VPDCRL--LHPDVIRGLVVASDLAEIGTSRKAALAVSVTQSRAGLDVAVMDGKPLDG--- 202

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
              +R+  A  A ++ +  +   ++  +        E++  A R +       +F Q   
Sbjct: 203 --PLRIALASLAERHDLARLAWGDEVVVTRRTP---EQMFGAARVVP---PSGAFLQA-T 253

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                 L             +++L+ G G F+L LA    +V AVE     + A      
Sbjct: 254 AEGEAALLAATETILAGARRIVDLFSGCGTFALPLAERA-QVHAVEGDAAMLAALDA--G 310

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              V+ +  +   +++  +      E +R          F    +DPPR+G +     + 
Sbjct: 311 RRGVDGLYPLSTEARDLFRRPLLPDELSR----------FDAAVIDPPRAGAEAQIAEIA 360

Query: 313 QAYPHIL-YISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           ++    L Y+SCNP +  RD   +L+  + +  + + DQF ++ H+E   
Sbjct: 361 KSRLRCLAYVSCNPVTFARDARVLLAAGYKMGPVRVVDQFRWSSHVELVA 410


>gi|241762027|ref|ZP_04760111.1| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|241373493|gb|EER63080.1| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
          Length = 397

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 122/364 (33%), Gaps = 34/364 (9%)

Query: 9   QYEQQLAEK---VDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           QY  +   K    DR+ +      +    +     S P   R R     +  G  L    
Sbjct: 59  QYADEEVYKNFLTDRIAEAFHQQALSAPVLKTAHLSPPYS-RRRVALRAFKAGKKLTLGY 117

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
               + + + I         +    +++ + ++     R+ L QI+   +      + ++
Sbjct: 118 NKTSSHQLVDIVECPLLDKNLFKAAMDLRSFLQKWLAPRS-LAQIEMTLADQGIDCLLVM 176

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                     E    +      + +    I +    +   +     ER+TV    +    
Sbjct: 177 P----FPETLEATEAITAFAAEKGFARLSIDQGYGVETRWE----SERVTVTLGAVPVAL 228

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             ++F Q        ++  V  A  G    + +L+ G G F+L       RV A E  + 
Sbjct: 229 PAHAFLQATKDGEQTLVHMVKEA-VGDARFVADLFSGLGTFALSF-EKDKRVYAAEGMRD 286

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V A +   A                        R+  R         RF+ I +DPPR+
Sbjct: 287 AVLALKQAAALAGKA--------------VFVEHRDLFRRPLQKDELVRFECIILDPPRA 332

Query: 303 GLDDATVGM-VQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           G  +    + +     I+Y+SCNP +  RD   +L     +  +    QFP++ H+E   
Sbjct: 333 GAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLEAGWVLHWVKPVGQFPWSLHVEMVG 392

Query: 361 LLVR 364
           L  +
Sbjct: 393 LFTK 396


>gi|326402755|ref|YP_004282836.1| putative RNA methyltransferase [Acidiphilium multivorum AIU301]
 gi|325049616|dbj|BAJ79954.1| putative RNA methyltransferase [Acidiphilium multivorum AIU301]
          Length = 362

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 131/344 (38%), Gaps = 37/344 (10%)

Query: 27  AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINAL 86
            F  P+     S P+  R RA+F +      +     + +++  + I         + AL
Sbjct: 46  GFADPHPAPVVSIPMGTRRRADFAVARVAGAVRLGFHETRSRTVVDIAECPLLRPELEAL 105

Query: 87  MIEMMATI-RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
           +  + A + RL+ L ++   +++ L + +D ++       L  +A      RL       
Sbjct: 106 IDPLRALLARLQGLRKSADVRVNLLDAGADVSVA------LDGEATAADRARLVAFAQEH 159

Query: 146 KYQIQLIGRANKTKICLDRDYVDERL--TVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
                        +I L  + V  R   T+    L+      +F QP+      +   VL
Sbjct: 160 DLP----------RISLGAEPVLIRRPPTLDCAGLVVLPPPAAFLQPSFEGEAAIRAAVL 209

Query: 204 AATKG---IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A        +  ++E Y G G  +  LA H  RV AVE + P++ A              
Sbjct: 210 AGLPPKLTRKSRIVEFYAGIGTLTGALAAHA-RVHAVEGSAPALAALDEAARTGGQAG-- 266

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHIL 319
             R+ ++         R+  R             + +DPP  G       +V+A    I+
Sbjct: 267 --RIDTE--------RRDLARRPVTAKELAGAACVVLDPPFDGAGPQIAPLVEAKVQRIV 316

Query: 320 YISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
           Y+SCNP++L R+ +  +   + +      DQFP + H+E  V+L
Sbjct: 317 YVSCNPEALAREAAPFARAGYRLLASTPIDQFPGSDHLESVVVL 360


>gi|149926953|ref|ZP_01915212.1| 23S rRNA (uracil-5-)-methyltransferase [Limnobacter sp. MED105]
 gi|149824505|gb|EDM83723.1| 23S rRNA (uracil-5-)-methyltransferase [Limnobacter sp. MED105]
          Length = 401

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 104/325 (32%), Gaps = 24/325 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP----IHYRMRAEF--HIWHDG 55
              +   +   Q+A K   L  ++        +            YR RA          
Sbjct: 89  GCAMQHIEPNAQVAIKNRALEDLLQRIGRQTPEQMMPPIYGSFWGYRHRARLSTRFVIKK 148

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
           D  +    ++ +     +         ++ +++ +   +    +   ++ QI+       
Sbjct: 149 DRFFVGFHEKSSSYVADMQVCHVLPKHVSNMIVPLGNMLVTLSIF-MRVPQIELAVGDGV 207

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD-YVDERLTVA 174
            A+V     R L+         LR   +       L      T   L+ D  VD    + 
Sbjct: 208 TAMVL----RHLEPLSESDLDTLRAFGNEWGVDWWLQPGGPATAHRLEADKPVDLTYRIP 263

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR 233
              +  R     FTQ N  IN  M+   ++       D +L+L+CG GNFSL LA     
Sbjct: 264 SFGIRMRFRPTDFTQVNHMINDAMISRAVSLLDLKPEDRVLDLFCGLGNFSLPLATKSSY 323

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V   E ++  V  A  N   N +           EF      E E    +       +F 
Sbjct: 324 VKGFEGSQDLVSRAGENAEFNGL-------ADKTEFHVRNLFEVETPEWESWG----QFD 372

Query: 294 TIFVDPPRSGLDDATVGMVQAYPHI 318
            + VDPPR G  +    +V A    
Sbjct: 373 KLLVDPPRDGALEICKAIVGARAEF 397


>gi|260752395|ref|YP_003225288.1| (uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551758|gb|ACV74704.1| (Uracil-5)-methyltransferase [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 397

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 123/364 (33%), Gaps = 34/364 (9%)

Query: 9   QYEQQLAEK---VDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           QY  +   K    DR+ +      +    +     S P   R R     +  G  L    
Sbjct: 59  QYADEEVYKNFLTDRIAEAFHQQALSAPVLKTAHLSPPYS-RRRVALRAFKAGKKLTLGY 117

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
               + + + I         +    +++ + ++     R+ L QI+   +      + ++
Sbjct: 118 NKTSSHQLVDIVECPLLDKNLFKAAMDLRSFLQKWLAPRS-LAQIEMTLADQGIDCLLVM 176

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                     E    +      + +    I +    +   +     ER+TV    +    
Sbjct: 177 P----FPETLEATEAITAFAAEKGFARLSIDQGYGVETRWE----SERVTVTLGAVPVAL 228

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             ++F Q        ++  V  A  G    + +L+ G G F+L       RV A E  + 
Sbjct: 229 PAHAFLQATKDGEQTLVHMVKEA-VGDARFVADLFSGLGTFALSF-EKDKRVYAAEGMRD 286

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +V A +   A                        R+  R         RF+ I +DPPR+
Sbjct: 287 AVLALKQAAALAGKA--------------VFVEHRDLFRRPLQKDELVRFECIILDPPRA 332

Query: 303 GLDDATVGM-VQAYPHILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGV 360
           G  +    + +     I+Y+SCNP +  RD   +L +   +  +    QFP++ H+E   
Sbjct: 333 GAKEQIANLAILPNGRIVYVSCNPATFARDAKTLLESGWVLHWVKPVGQFPWSLHVEMVG 392

Query: 361 LLVR 364
           L  +
Sbjct: 393 LFTK 396


>gi|83309427|ref|YP_419691.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Magnetospirillum
           magneticum AMB-1]
 gi|82944268|dbj|BAE49132.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase [Magnetospirillum
           magneticum AMB-1]
          Length = 438

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 121/356 (33%), Gaps = 33/356 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNLQI---FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
             K D L   +    +    +    R  P   R RA F        +      + +   +
Sbjct: 106 EWKRDLLVTQLARQGLAEAIVEPLVRIPPAS-RRRATFAFTRAKGAIVLGFNGRASHTVV 164

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            I+        +   +  +   +    +          LT       V +     LD   
Sbjct: 165 DIERCPLLDPALGDALPGLRKLLGGIAIEGGG---DLTLTLTEGGLDVLVEAPARLDLFE 221

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           RE       +L   +   +  G      I   R  +     V    +        F QP 
Sbjct: 222 RETLAEAAASLDLARLHWRRPGTGLVEPIARRRAAL-----VHFGGIAVEPAPGGFLQPT 276

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            G  + + E +L+AT      + +LY G G+FSL LA     V AVE  +  V A     
Sbjct: 277 RGGELAIAEAILSATPKDVP-VADLYSGCGSFSLPLALR-GPVRAVEGEQGPVAALEAAA 334

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            A  +     VR  +       RR    + LK        F+ I +DPPR+G       +
Sbjct: 335 RAASLPLTAEVRDLA-------RRPLAAHELK-------GFRAIVLDPPRAGAAAQAAEL 380

Query: 312 VQAYP----HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
            +  P     I  +SCNP +L RDL  L      I+R+   DQFP++ H+E    L
Sbjct: 381 ARPSPGGPTTIAMVSCNPATLARDLRTLCDGGWRIKRVVPIDQFPWSAHLEAVATL 436


>gi|91978768|ref|YP_571427.1| RNA methyltransferase [Rhodopseudomonas palustris BisB5]
 gi|91685224|gb|ABE41526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas
           palustris BisB5]
          Length = 412

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 128/368 (34%), Gaps = 46/368 (12%)

Query: 7   IDQYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
            D Y+   A K D + + +           +  +     R R   H      D+  + F 
Sbjct: 81  PDAYQ---AWKRDLVIETLRQAKIDCAVDPLIDAHGAG-RRRITLHARKGTHDVLKVGFS 136

Query: 65  Q-QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID-----YLTSQSDQAI 118
              + + + ID           L   +   I     L   L  I       +T+  +   
Sbjct: 137 AVASHDVIAIDACPI-------LDPALDGAIEAAWALAETLTFIGKPLDIQVTAAENGLD 189

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           V +     L         R+ +       Q  L       ++ L R      +  A  TL
Sbjct: 190 VDVRGSGPLPSKMITALSRIAE-------QHNLARLTRHGELVLMRTPPTVMIGQARVTL 242

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                  +F Q  A     + E  LA  +     + +L+CG G F+L LA    RV A +
Sbjct: 243 ----PPGAFLQATALGEQTLAELALAQIQ-RAKLIADLFCGVGPFALRLAAKA-RVFACD 296

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
              P+V A +    A   + +K ++   ++     RR      L D       F  +  D
Sbjct: 297 SDAPAVNALQKAAQA--TSGLKPIKAEPRDL---FRRPLAPPELLD-------FDVVLFD 344

Query: 299 PPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           PPR G       +  +  P I+ +SCN  +  RD  +L    + +E++   DQF +T H+
Sbjct: 345 PPRQGAQAQAAQLAASRVPLIIAVSCNAQTFARDARLLIDGGYRLEKVTPVDQFRHTPHV 404

Query: 357 ECGVLLVR 364
           E   +L +
Sbjct: 405 ELVGVLRK 412


>gi|260913773|ref|ZP_05920249.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pasteurella dagmatis
           ATCC 43325]
 gi|260632312|gb|EEX50487.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Pasteurella dagmatis
           ATCC 43325]
          Length = 322

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 82/209 (39%), Gaps = 27/209 (12%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLV 226
            + L  +   +        F Q N  +   +        K +    L +L+CG G F L 
Sbjct: 128 QQTLPESFNQIPLFIRPQGFFQTNPKVAEGLYRTAQQWIKDLPITHLWDLFCGVGGFGLH 187

Query: 227 LARHFD--------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
            A             +  +EI+  ++ AA  +     + NV    + +K F         
Sbjct: 188 CATVLQQTNPNKDIELTGIEISASAIAAATQSAQQLSLKNVSFQALDAKNFA-------- 239

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILS 336
                     S     + V+PPR G+       +   A   ILY SCN +++ +DL+ L+
Sbjct: 240 -------FEQSKTPDLVIVNPPRRGIGTELAQFLNKLAPHFILYSSCNAETMGKDLTELT 292

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
             + ++++ LFD FP++ H E   LL RK
Sbjct: 293 D-YQLQKIQLFDMFPHSHHYEVLCLLERK 320


>gi|330466498|ref|YP_004404241.1| deoxyribonuclease/rho motif-related TRAM [Verrucosispora maris
           AB-18-032]
 gi|328809469|gb|AEB43641.1| deoxyribonuclease/rho motif-related TRAM [Verrucosispora maris
           AB-18-032]
          Length = 422

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 130/378 (34%), Gaps = 75/378 (19%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN----------LQIFRSEPIHYRMRAEFHI 51
              L       QL  K D +R+ ++     +          ++     P+ +R R  + +
Sbjct: 100 GCDLQHVAVPAQLRWKTDVVREQLIRLGGLDEAGCDALNVRVETLPGGPLGWRSRVRYAV 159

Query: 52  WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
                     +   ++ E + +D  +     I      + ++    P   A    ++ + 
Sbjct: 160 ---DAAGRAGLLKHRSHEVVPVDRCLIAHPAIQD-QPVLTSSGTRWPADDA----VEVVA 211

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
           S      VT                                  A +T+         ER+
Sbjct: 212 STGGDVTVT-------------------------------ASTAGRTRRVSG----PERV 236

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH 230
                   +    +SF Q +      ++  VL  T    G+   +LY G G F+  LA  
Sbjct: 237 RELAADREWHLPASSFWQVHPAAADTLVAAVLELTGPKPGERAWDLYGGAGLFAAALAER 296

Query: 231 FD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                RV  VE A   V AAR N+    +  V++V    +    A+ R R          
Sbjct: 297 VGESGRVTLVEAAGDGVAAARENLR--DLAQVEVVAARVE---TALARRR---------- 341

Query: 288 HSYRFKTIFVDPPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERL 344
            +     + +DPPRSG     V  +V A P  + Y++C+P +  RDL + +     +  L
Sbjct: 342 ITGPVDVVVLDPPRSGAGARVVRDVVAAGPRAVAYVACDPAAFARDLRVFTDLGWRLAAL 401

Query: 345 ALFDQFPYTRHMECGVLL 362
             +D FP T+H+E   LL
Sbjct: 402 RGYDLFPMTQHVELVGLL 419


>gi|300932464|ref|ZP_07147720.1| putative SAM-dependent methyltransferase [Corynebacterium resistens
           DSM 45100]
          Length = 447

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 133/373 (35%), Gaps = 55/373 (14%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL-----QIFRSEPI-HYRMRAEFHIWHDGDDLYHIMFD 64
           E  L  K   +          +L          EP   +R RA   +  +G+     +  
Sbjct: 105 EGSLEFKKSVVLDQFERIGKISLAERLVTSHSLEPFQGWRTRARLAVDSEGN---VGIRK 161

Query: 65  QQTKERMRIDYFMPGSLLINALM---IEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           + + + + +      +    AL+    E +  ++   ++RA       + +   +++V L
Sbjct: 162 KNSHDVVPVTATTVCAQWDPALVAGLPEQIEKLQSHGMIRANTELTIAVGTDGQRSVVEL 221

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
             +R                               KTK  +     D  +T A   L + 
Sbjct: 222 SGNRRH----------------------------RKTKPLVG----DGTITQAHGPLTWE 249

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDL---LELYCGNGNFSLVLARHFDRVLAVE 238
               +F Q ++       +W+       +G +    +LY G G+ S  L    DRV++V+
Sbjct: 250 LPAQAFWQGHSAAVGFYTQWISEKVPSAKGKVTTGWDLYGGAGSLSAALVDKVDRVVSVD 309

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI-----HSYRFK 293
           IA  +  A     +   +++V+    +     + +    + ++              R  
Sbjct: 310 IASEATSAGSRAYSDAKIHSVEFWDSNVDRVAERVAASEKKSKRGAPTWWRERDADERLH 369

Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQF 350
            + +DPPR+G    T+  V      H++++ C+P +  RD+   +   + I  +A+ D F
Sbjct: 370 AVVLDPPRTGAGKHTIRAVAGRRPRHVVHVGCDPAAAARDVRRWIDAGYAISAVAIVDAF 429

Query: 351 PYTRHMECGVLLV 363
             T H+E  + L 
Sbjct: 430 GLTHHVEVLIHLE 442


>gi|170781047|ref|YP_001709379.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155615|emb|CAQ00732.1| putative RNA methyltransferase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 441

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 22/233 (9%)

Query: 149 IQLIGRANKTKICL---DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--- 202
           I L+  ++     L    +    + +T   R   ++     F Q +      + + V   
Sbjct: 217 IDLVAPSDGHVRMLLIDGKAQRRDTITERVRDREFKLEAGGFWQVHRRAAETLYDAVQSS 276

Query: 203 -LAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN 258
              A    +   L+LY G G  +  +   F    R+ +VE  + + E A  N+A      
Sbjct: 277 IDEALFDPRAANLDLYGGVGLLAAAVGDRFGDTTRITSVESDEVATEFAGDNLA--EWVG 334

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YP 316
              +      + Q + RE         +    +  T+ +DPPR+G     V  +      
Sbjct: 335 AASLTSRVDRYLQQLAREA-----TPAERRRLQGATVVLDPPRAGAKKPVVDALAELHPA 389

Query: 317 HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSG 368
            ++Y++C+P +L RD+++ +   + +  +  +D FP+T H+E   +LV  P+G
Sbjct: 390 QVVYVACDPVALARDVALFAERGYELRSVRSYDLFPHTHHVESVAVLV--PAG 440


>gi|288957174|ref|YP_003447515.1| RNA methyltransferase [Azospirillum sp. B510]
 gi|288909482|dbj|BAI70971.1| RNA methyltransferase [Azospirillum sp. B510]
          Length = 443

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/317 (21%), Positives = 118/317 (37%), Gaps = 38/317 (11%)

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           G  ++    ++Q+   + ++     +  + AL+  +   + L  LL         LT   
Sbjct: 158 GGRVWFGFNERQSHRLVDLEECPVLAPRLFALVEPLR--VLLAGLLPEGGDADVMLTDLE 215

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
             A + LI  R LD A RE    L      R  +I             DR  V+      
Sbjct: 216 GGADLLLIGPRGLDRAARE---ALVGFEPERVARIAWQPA--------DRAAVEPVANRR 264

Query: 175 GRTLIY-----RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
              + +     +    +F Q  +      L   + A  G    + +L+ G G FS+ LA+
Sbjct: 265 PAFIRFASVPIQPPPGAFLQA-SAEGEAALLAAVRAGVGQAARIADLFAGVGTFSIPLAQ 323

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V AVE  + +V A   ++    +          ++  +     +E NR        
Sbjct: 324 QA-SVHAVEGDEAAVTALGRSVQGLRLT------AERRDLFENPLGVKELNR-------- 368

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             +  +  DPPR+G       +  A  P ++ +SCNP S  RD  +L    + + ++   
Sbjct: 369 --YDAVVFDPPRAGAAAQAAALAGARVPRVVGVSCNPASFARDARVLVDGGYRLVKVWPV 426

Query: 348 DQFPYTRHMECGVLLVR 364
           DQF ++ HME   L  R
Sbjct: 427 DQFLWSAHMELVGLFER 443


>gi|92116386|ref|YP_576115.1| RNA methyltransferase [Nitrobacter hamburgensis X14]
 gi|91799280|gb|ABE61655.1| 23S rRNA m(5)U-1939 methyltransferase [Nitrobacter hamburgensis
           X14]
          Length = 414

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/326 (20%), Positives = 118/326 (36%), Gaps = 32/326 (9%)

Query: 44  RMRAEFHIWH-DGDDLYHIMFDQQTKERMRIDYFMPGSLLIN-ALMIEMMATIRLEPLLR 101
           R R   H    +   +        +   + ID        ++ AL         L P  +
Sbjct: 116 RRRITVHARRGENGGMRVGFAAPNSHAIVPIDTCPILDPALHGALDAARALADVLRPANK 175

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
               Q+   T+  +   V +     L  A      R+ +A    +            ++ 
Sbjct: 176 PLDIQV---TAADNGLDVDVRGSGPLPAALIATLSRVAEAHRLARLT-------RHGELV 225

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L R      + +    L+      SF Q         L  ++AA  G    + +L+CG G
Sbjct: 226 LMR--APPEIGIGAARLV--LPPGSFLQA-TVAGEEALAALVAAHCGKARHIADLFCGVG 280

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
            F+L LA    RV A +    ++ A +   A  H   +K V+  +++     RR      
Sbjct: 281 PFALRLA-AGARVTAFDSDAGAIGALQKAAATTH--GLKPVKAEARDL---FRRPLLTQE 334

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTH 339
           L+DID+          DPPR G    +  +     P I+ +SC+  +  RD  IL    +
Sbjct: 335 LRDIDVA-------VFDPPRQGAQAQSKQLAASKIPVIVAVSCSIATFARDARILIDGGY 387

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E +   DQF ++ H+E     +R+
Sbjct: 388 RLETVTPVDQFRHSPHVELVAKFLRR 413


>gi|269792184|ref|YP_003317088.1| (Uracil-5)-methyltransferase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099819|gb|ACZ18806.1| (Uracil-5)-methyltransferase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 353

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 124/370 (33%), Gaps = 36/370 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP---IHYRMRAEFHIWHDGDDL 58
               +   Y++ L  K + L + +         I    P     YR R   H        
Sbjct: 9   GCRYIHLTYQEGLRLKEEWLGRALPGRTGLISPIRTPGPDRLWGYRERVRLHAAVVDRRW 68

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
              M  Q     + ++     S  +N  +  +  ++  E  L         +      A+
Sbjct: 69  RFGMMRQD--RLIPLEDCPVQSQRVNRTLRLLSESLPPELPLAFVAVTFAQV------AL 120

Query: 119 VTLIYHRL-LDDAWRECAIR-LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR 176
           V        LD  W + A    R               +      L   + +ER      
Sbjct: 121 VFKSRGVPHLDIEWSKVAQAGCRGIWGHANPVAGRRIFSRGEWRLL---WGEERSLGDLG 177

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVL 235
           T        SFTQ    ++   ++  +       G    +LYCG+G     L+      L
Sbjct: 178 TF---YGPWSFTQQIPELHRDSIDEAVRFLSPGVGLGAADLYCGDGVSLRALSSAGAETL 234

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            VEI+  ++  A+ N               S +  Q    +R       +       +  
Sbjct: 235 GVEISGLALRMAKLN-------------SPSSKLLQGTCAQRTPQIGLFMSRFQENQRLA 281

Query: 296 FVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
           +V+PPRSGL+   V ++       + Y+SC+  +L RDL +L    +   ++  +D FP+
Sbjct: 282 YVNPPRSGLEAEVVDLLGTTKVRRLAYLSCSAGTLNRDLDMLEARGYRCRKIIPYDFFPW 341

Query: 353 TRHMECGVLL 362
           T H+EC  LL
Sbjct: 342 TDHVECLALL 351


>gi|319784705|ref|YP_004144181.1| (uracil-5)-methyltransferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170593|gb|ADV14131.1| (Uracil-5)-methyltransferase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 413

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 115/312 (36%), Gaps = 33/312 (10%)

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            +        + E + I         I A +  + A   L      K F++    + S  
Sbjct: 126 GMLLGFHRHLSPEIVAISECPISLPEIVAALDRLKALAELVCAT-TKSFRLAVTVTGSGL 184

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLTVA 174
            +      +L +              H R+     +      ++ +D + + E  +  V 
Sbjct: 185 DVAVHESGKLGE--------------HQRRIAANFVMAQGFARLSIDDEIIIEPKKPVVM 230

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             ++       +F Q        M + ++         + +L+ G G+F+L LA     V
Sbjct: 231 FGSVAVALPPGAFLQATEAAEQAMAD-IVGGHLKRAKKVADLFAGCGSFALRLAAK-SEV 288

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            AVE      +AA  +           ++  + E     RR   F  L         F  
Sbjct: 289 HAVEG-----DAAALSALDRGSRFATGLKRVTGERRDLFRRPLTFKELNA-------FDG 336

Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           +  DPPR+G +D +  + ++  P++  +SCNP +L RDL IL    + ++ +   DQF +
Sbjct: 337 VVFDPPRAGAEDQSKQIARSDVPYVAAVSCNPVTLARDLRILIDGGYALKSVTPIDQFLW 396

Query: 353 TRHMECGVLLVR 364
           + H+E   LL +
Sbjct: 397 SPHVEAVALLEK 408


>gi|324997158|ref|ZP_08118270.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudonocardia sp. P1]
          Length = 404

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 24/200 (12%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARH 230
           T       +     +F Q +  +   +   V       +G +  +LY G G    VLAR 
Sbjct: 219 TAHAAGRTWELSAGTFWQVHPALADTLATLVDEWAGAPRGGVAWDLYGGVGLLGSVLARQ 278

Query: 231 FD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                 VL VE +  +V       A   +  V  VR  ++         RE  RL+    
Sbjct: 279 VGPDGTVLVVESSPSAVADGAA--ALADLPQVSFVRGRAE---------REIARLRP--- 324

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERL 344
                  +  DPPR+GL  A V  +  +    +++++C+P +L RDL++ +   + +  L
Sbjct: 325 ---DPDVVVTDPPRTGLGRAAVRALATRGPRRVVHVACDPAALGRDLALFAEHGYRVAGL 381

Query: 345 ALFDQFPYTRHMECGVLLVR 364
             FD FP T HME   LL R
Sbjct: 382 RAFDAFPMTHHMEAVALLER 401


>gi|304321306|ref|YP_003854949.1| putative rna methyltransferase protein [Parvularcula bermudensis
           HTCC2503]
 gi|303300208|gb|ADM09807.1| putative rna methyltransferase protein [Parvularcula bermudensis
           HTCC2503]
          Length = 438

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/372 (21%), Positives = 133/372 (35%), Gaps = 39/372 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM--LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
              L        LA K  R+   M    F VP +   +S P   R RA   +    D L+
Sbjct: 93  GCALQHMDRAALLAWKRARVEAAMLRAGFAVPPVHTHQSPPRS-RRRARLALRRFADGLH 151

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI- 118
                +++   + ++     +L +             E LL       D + +++D  I 
Sbjct: 152 FGFRQRRSHAVVPMEVCHILTLPLFTCARRFAEA--AEGLLPKGAINADLVLTETDTGID 209

Query: 119 --VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC--LDRDYVDERLTVA 174
             +  +    L  A RE      +     +  +  I    +T       +  V       
Sbjct: 210 LMILGVDEGGLGLAEREALANFAEVADLARLSVGEIPLVTRTPPAMRWGKASVP------ 263

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                    +  F Q  A      L   +    G    + +L+ G G FSL LA    RV
Sbjct: 264 -------VPQGGFLQATADGEAA-LRMAVCTGVGAVRSVADLFAGIGTFSLPLAATGARV 315

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           LA E A  +V A R   A+  +                +RR+   + +   D+ +  F+ 
Sbjct: 316 LAAEGAPDAVSALRTGAASAGLA------------VDVLRRDLFTDPIAAEDLAA--FEA 361

Query: 295 IFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
           +  DPPR+G       + +   P +  +SC P +L RDL   S  + +  L + DQF ++
Sbjct: 362 VVFDPPRAGAAAQAAAIAEAGVPLVAAVSCQPGTLARDLRAFSAAYDLTALTVVDQFLWS 421

Query: 354 RHMECGVLLVRK 365
            H+E   +L R+
Sbjct: 422 GHIEVVAILRRR 433


>gi|83593442|ref|YP_427194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodospirillum rubrum
           ATCC 11170]
 gi|83576356|gb|ABC22907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodospirillum rubrum
           ATCC 11170]
          Length = 465

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 124/382 (32%), Gaps = 54/382 (14%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K D++ + +         +    S P   R R    +           F +++   + 
Sbjct: 105 DWKRDKVVRALAHRGLGTVTVDQTLSLPAGTRRRLSVGLRGRARHGVCGFFARESHRLID 164

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
             + +  +  + ALM  +   +   P   A   +   L ++++  I   +      +   
Sbjct: 165 TPHCLLPTPPLAALMEHLRRAL---PGFLAPAAEGTALMTETETGIDLRLDLPTAPELTG 221

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
             A+               I   ++  + L R     +LT+ G  ++       F QP+ 
Sbjct: 222 REALAALAEDADLARLTLTIAGGSEEPVALRRA---PKLTLGGTPVL--PPPGPFLQPSV 276

Query: 193 GINVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                + + VLAA + +    +  +L+CG G F+L LA    ++   +I   ++ A    
Sbjct: 277 DGERALTDLVLAAFEDLPAGAVIADLFCGLGTFALPLAARGFKLRGWDIESSAIGALGAT 336

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             A                 +     R+  R   +      +  + +DPPR+G       
Sbjct: 337 APAR--------------AGKVQATTRDLFRRPLVAEELAGWSGVVLDPPRAGAKAQVEA 382

Query: 311 MVQAYP---------------------------HILYISCNPDSLCRDLSIL-STTHTIE 342
           +  A P                            I+ +SC P S  RD   L    + I+
Sbjct: 383 LAAAGPGPLGAPVRPSILGIVGGAPAAAATGPSVIVLVSCAPASFARDARALVDGGYRID 442

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
            +   DQF ++ H+E      R
Sbjct: 443 WVRPVDQFTWSHHVEVVARFSR 464


>gi|227893052|ref|ZP_04010857.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           ultunensis DSM 16047]
 gi|227865165|gb|EEJ72586.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
           ultunensis DSM 16047]
          Length = 369

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 102/293 (34%), Gaps = 24/293 (8%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI----HYRMRAEFHIWHDGDDLY 59
            L   +YE QL  K DR+ +++    + ++++  + P      YR +   ++ +    L 
Sbjct: 81  NLANLKYEYQLKFKHDRIMELLKQAGLADIKVKDTVPSPKQVGYRNQRLVYVRNYHGQLE 140

Query: 60  HIMFDQQTKERMRIDYFMPGSLL-------INALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                  T E   +D F+            I  ++ EM             +  +D   S
Sbjct: 141 FGFLKPYTHEFEPVDNFLTTDKQLSKVLMGIRDILREMKIPAYDPKTNTGFIRNVDVRRS 200

Query: 113 -QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-------CLDR 164
            ++ + +V L+  +            L + +H               KI           
Sbjct: 201 NKTGEIMVILVTRQKDRPDLPRLYALLTEKMHDINGISMNYNPHQTEKIWGSSDIPLWGV 260

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNF 223
           DY+ E +      L ++    S+ Q N+     + +  +        D+ ++ Y G G  
Sbjct: 261 DYLTEEI----NGLKFQISPQSYFQFNSLQAPVVRDIAIKEADIQPDDVVIDAYSGVGTI 316

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
            L+ A+    V  +E    SV  AR N   N ++N K  + ++ +      ++
Sbjct: 317 GLLAAKKAKEVREIETVVASVRDARRNAENNQIDNAKFFKGNADQVLARWNKQ 369


>gi|14043085|gb|AAH07526.1| TRMT2B protein [Homo sapiens]
          Length = 494

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 133/372 (35%), Gaps = 72/372 (19%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++            VP  +        I  S  I  YR 
Sbjct: 95  SYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVPKSERLSCLLHPIIPSPVINGYRN 154

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRL 96
           ++ F +    D       +++   +       +   +         +       +    L
Sbjct: 155 KSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPL 214

Query: 97  EPLLRAK----LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA--------- 141
           EP L         ++   T+     +  + +H  +L  +        +++          
Sbjct: 215 EPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKLSQEELHVQKEIVKEFFIRGPGAAC 274

Query: 142 -LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N     
Sbjct: 275 GLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINTAGAE 330

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            ML   +    G+  D  LL++ CG G   L LA+H  RVL +E+ + +VE AR+  A N
Sbjct: 331 -MLYRTVGELTGVNSDTILLDICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFN 389

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N +     +++    + + +E            +     V+P R+GL    +  ++ 
Sbjct: 390 GITNSEFHTGQAEKILPGLLKSKE----------DGQSIVAVVNPARAGLHYKVIQAIRN 439

Query: 315 YPHI---LYISC 323
           +  I   +++SC
Sbjct: 440 FRAIHTLVFVSC 451


>gi|260460312|ref|ZP_05808564.1| (Uracil-5)-methyltransferase [Mesorhizobium opportunistum WSM2075]
 gi|259033957|gb|EEW35216.1| (Uracil-5)-methyltransferase [Mesorhizobium opportunistum WSM2075]
          Length = 411

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 112/312 (35%), Gaps = 33/312 (10%)

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ 116
            +        + E + I         I A +  + A   L             +T     
Sbjct: 124 GMLLGFNRHLSPEIIPISECPISLPEIVAALDRLKALADLICATTKSFRMAVTVTGSGLD 183

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--RLTVA 174
             V       L +  R  A             +   G A    + +D + + E  +  V 
Sbjct: 184 --VAAHESGKLGENQRRIASNF----------VMAQGFAR---LSIDDEIIIEPRKPVVM 228

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
             ++       +F Q        M + ++ A       + +L+ G G+F+L LA     V
Sbjct: 229 FGSVAVAVPPGAFLQATEAAEQTMAD-IVGAHLKRAKKVADLFAGCGSFALRLAAK-SEV 286

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            AVE    ++ A           ++K V    ++     RR   F  L         F  
Sbjct: 287 HAVEGDAAALSALDRGSRF--ATSLKRVTGERRDL---FRRPLTFKELNA-------FDG 334

Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           +  DPPR+G +D +  + ++   ++  +SCNP +L RDL IL    +T++ +   DQF +
Sbjct: 335 LVFDPPRAGAEDQSKQIARSDVAYVAAVSCNPVTLARDLRILIDGGYTLKSVTPIDQFLW 394

Query: 353 TRHMECGVLLVR 364
           + H+E   LL +
Sbjct: 395 SPHVEAVALLEK 406


>gi|323357043|ref|YP_004223439.1| SAM-dependent methyltransferase [Microbacterium testaceum StLB037]
 gi|323273414|dbj|BAJ73559.1| SAM-dependent methyltransferase [Microbacterium testaceum StLB037]
          Length = 417

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 29/240 (12%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
           D +     +++++ R + ++     + V+ER+        +R     F Q +      + 
Sbjct: 192 DLVQPSDGRVRVLPRPDGSRSRPTPEVVEERVGER----TFRVDAGGFWQVHRLAARTLT 247

Query: 200 EWVLAATKGI-----QGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNI 251
             V      +     +G  L+LY G G F+  LA+      RV++VE    + E A  N+
Sbjct: 248 SLVADELTAVGGVDPEGLHLDLYGGVGLFAATLAQLGGSSTRVVSVESDPRATEHAGENL 307

Query: 252 AANHVNNVKIVRMSSKEFTQAMRR---EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           A       +     +  F   +     ERE  RL            + +DPPR+G     
Sbjct: 308 A--EWIGARAETARADRFVAKLAADASERERERLA--------RGVVLLDPPRAGAGREV 357

Query: 309 VGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIER--LALFDQFPYTRHMECGVLLVR 364
           V  + A     + Y++C+P +L RDL+I +    + R  +   D FP+T H+E  V+L R
Sbjct: 358 VEGIAALSPATVAYVACDPVALSRDLAIFAEHGYVARDGIHGVDLFPHTHHVEAVVVLQR 417


>gi|94497587|ref|ZP_01304156.1| (Uracil-5)-methyltransferase [Sphingomonas sp. SKA58]
 gi|94423004|gb|EAT08036.1| (Uracil-5)-methyltransferase [Sphingomonas sp. SKA58]
          Length = 405

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 114/312 (36%), Gaps = 27/312 (8%)

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           G  +     ++ +   + +         + AL+  + + + L  +L  K      ++   
Sbjct: 119 GKRVTIGFAEEGSHRLIDLQMCAVLDPRLFALVDPLRSLLAL--ILPDKRAAHVKMSLID 176

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
               + L   R+   A  E    L D           I   +  +   + D      T++
Sbjct: 177 QGVDLLLEGVRVEGLAADEG---LGDFARMHGLARLTIDEGDGPQTRWEPDAA----TIS 229

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
              +       SF Q        + + V AA     G + +L+CG G F+L  A     V
Sbjct: 230 FGGVPVAFPPYSFLQATPDGEAALTDAVRAA-LPATGAVADLFCGLGTFALA-AGEGRPV 287

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A E A+  +   +           + +    ++  +      E NR          F  
Sbjct: 288 YAAEAARDVILQLKMAAGRAQ----RRLAADHRDLFRRPLTPEELNR----------FAA 333

Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPPR+G  +  + +VQA  P I Y+SCNP S  RD + L +  + +E +    QF +
Sbjct: 334 VILDPPRAGAREQVLQLVQADVPTIAYVSCNPASFARDAAHLTAAGYRLESVRPVGQFRW 393

Query: 353 TRHMECGVLLVR 364
           + H+E   +  +
Sbjct: 394 STHVELVGIFRK 405


>gi|209881001|ref|XP_002141939.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209557545|gb|EEA07590.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 547

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 105/306 (34%), Gaps = 58/306 (18%)

Query: 104 LFQIDYLTSQSDQAIVTLIYHRL----LDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           + Q  YL+ +    I  L+  +L    L++ +     ++      +   I         K
Sbjct: 230 IIQTSYLSIRDYNTISKLLIEQLVFCELEEPFLYSDYQISSLYLQQSDSIVDTFEGGNLK 289

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML----EWVLAATKGIQGD--- 212
           +       DE++T             +F Q N      +     + V+    G       
Sbjct: 290 LIWG----DEQITYCISNTTLNIGPRTFFQTNTQGCQILYSTIKDLVILTFLGSSNRNKL 345

Query: 213 ----------LLELYCGNGNFSLVLARHFD---------RVLAVEIAKPSVEAARYNIAA 253
                     +L++ CG G+  L L +  +          ++ ++  + S+  A+ N   
Sbjct: 346 IKERYTNKLYILDICCGVGSIGLYLYKSLETLRAFYPSINLIGIDCVEESISVAKMNAKI 405

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N   N + +   +++           N+L  I      F  I  DPPR GL       ++
Sbjct: 406 NGAENTEYIVGKAEDILP--------NKLSSIRNEDADFLAIV-DPPRCGLHKNVTKALR 456

Query: 314 AYPHI---LYISCNPDSLCRDLSILSTTHTIER------------LALFDQFPYTRHMEC 358
              +I   +Y+SCN  SL  +   L + +  +             +   D FPYT H+E 
Sbjct: 457 ISSNICSLIYVSCNTKSLLSNCITLCSAYDPQSEDSKIKPFIPKLVIPIDIFPYTNHVET 516

Query: 359 GVLLVR 364
            V L R
Sbjct: 517 VVYLER 522


>gi|307265959|ref|ZP_07547507.1| methyltransferase small [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919023|gb|EFN49249.1| methyltransferase small [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 193

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 77/201 (38%), Gaps = 29/201 (14%)

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIR---------LRDALHARKYQIQLIGRANKTKIC 161
            S+S + ++ ++    L   + E   R         L   LH +           + ++ 
Sbjct: 4   ASKSGEILLNIVTTTQLQHDFTELIERYKNANFESRLVGVLHTQNDSWSDAVVCERLEVL 63

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
             RDY+ E +      L ++    SF Q N+     + E V      +    + +LY G 
Sbjct: 64  YGRDYLIEEIL----DLKFKISAFSFFQTNSYGAEKLYETVREFAGDVSDKIVFDLYSGT 119

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G   +++A    +V+ +E+ + +V +AR N   N + N   +       +Q ++  +E  
Sbjct: 120 GTIGIIMAPMAKKVIGIELVEEAVMSARKNAELNGLENCTFIAGD---VSQKLKEIKE-- 174

Query: 281 RLKDIDIHSYRFKTIFVDPPR 301
                     +   + VDPP+
Sbjct: 175 ----------KPDVVIVDPPK 185


>gi|183179753|ref|ZP_02957964.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae
           MZO-3]
 gi|183013164|gb|EDT88464.1| tRNA (uracil-5-)-methyltransferase
           (tRNA(M-5-U54)-methyltransferase) [Vibrio cholerae
           MZO-3]
          Length = 105

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/105 (63%), Positives = 79/105 (75%), Gaps = 2/105 (1%)

Query: 264 MSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           MS++EFTQAM  +REFNRLKD  +D+ SYR  TIFVDPPRSG+D  T  MVQ Y  ILYI
Sbjct: 1   MSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMDIDTCKMVQGYERILYI 60

Query: 322 SCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           SCNP++L  +L +L  TH + R ALFDQFPYT HME GV+L RK 
Sbjct: 61  SCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERKK 105


>gi|90422657|ref|YP_531027.1| RNA methyltransferase [Rhodopseudomonas palustris BisB18]
 gi|90104671|gb|ABD86708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas
           palustris BisB18]
          Length = 412

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 116/364 (31%), Gaps = 37/364 (10%)

Query: 7   IDQYEQQLAEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF- 63
            + Y+   A K   +   +           +  +     R R   H      ++  + F 
Sbjct: 81  AEPYQ---AWKRQLVIAALAQAKIDCEVAPLIDAHGAG-RRRITLHARKGTHEVLKVGFT 136

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
              + + + ID        ++  +    A           L     +T+  +   V +  
Sbjct: 137 AAGSHDIVPIDACPILDPGLDGALEAAWALAEALIETGKPL--DIQVTAADNGLDVDIRG 194

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
              L         RL +       Q +L       ++ L R      +  A  TL     
Sbjct: 195 SGPLPSKLIAALSRLAE-------QHKLARLTRHGELVLMRKPPVISIGPAHLTL----P 243

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             +F Q  A     +    +    G    +++L+CG G F+L LA     VLA +    +
Sbjct: 244 PGAFLQATAAGEATLAALAIERC-GKAKLIVDLFCGVGPFALRLAAKAK-VLAYDSEPAA 301

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + A +       +  +        E     RR      L+D+D        +  DPPR G
Sbjct: 302 IAALQAAAKTPGLKPLT------AEVRDLFRRPLVTQELRDVDA-------VVFDPPRQG 348

Query: 304 LDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
                  +       ++ +SCN  +  RD  IL    + I  +   DQF +T H+E    
Sbjct: 349 AQAQAEKLAAGKVATVVAVSCNAATFARDARILIDGGYQIGTVTPVDQFRHTPHVELVAK 408

Query: 362 LVRK 365
             +K
Sbjct: 409 FSKK 412


>gi|312879698|ref|ZP_07739498.1| (uracil-5)-methyltransferase [Aminomonas paucivorans DSM 12260]
 gi|310782989|gb|EFQ23387.1| (uracil-5)-methyltransferase [Aminomonas paucivorans DSM 12260]
          Length = 360

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/364 (18%), Positives = 113/364 (31%), Gaps = 46/364 (12%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIH---YRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           A+K   +R  +  ++     +   +P     YR R       DG      M  +   E +
Sbjct: 26  AQKEGWIRTALAPWEDRIAPLRSPDPQRRLGYRERVRLATRWDGKGWRFGMLLRD--ELV 83

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++        ++A  +     +                 + +   +V    H L   A 
Sbjct: 84  PLEDCP-----LHAPRVRAALNLFRPLPPPPAFPLAFVTLTGAQATLVVKASHPLEPPAL 138

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDY--VDERLTVAGRTLIYRQIENSFTQ 189
               +            + L       +    R    +   +  +   L       SF Q
Sbjct: 139 DFSGLEAAGV-----EGLWLHHHPTAGRRIFGRGAWCLLWGIPESRNPLGLLYGPASFQQ 193

Query: 190 PNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
               +    L+   A      GD   +LYCG+G             L VEI+  +++ A 
Sbjct: 194 ALPELYALSLDQAEAHLAPGPGDGTGDLYCGDGASLARWRARGSEALGVEISGSALDRAA 253

Query: 249 YNI------AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            N                 +R     F Q MRR                     ++PPR+
Sbjct: 254 RNAPGCILLQGTCGQRAPQIRGWLASFPQGMRRAY-------------------LNPPRT 294

Query: 303 GLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECG 359
           GL+     M+   P   + Y+SC   +L RDL +L    + +  L  +D FP T H+E  
Sbjct: 295 GLETEVAAMLTDCPAGRLAYLSCAARTLRRDLELLEAGGYEVVSLTPYDFFPRTDHVETL 354

Query: 360 VLLV 363
            LL 
Sbjct: 355 ALLE 358


>gi|149184669|ref|ZP_01862987.1| putative RNA methyltransferase [Erythrobacter sp. SD-21]
 gi|148831989|gb|EDL50422.1| putative RNA methyltransferase [Erythrobacter sp. SD-21]
          Length = 397

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 28/323 (8%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R RA  H    G        + ++   + +      +  + AL+  +   I      R  
Sbjct: 101 RRRATLHALKAGKSAVIGFREARSTRVVDMRECHILAPELFALVSPLRNLIAKHSGRR-- 158

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
              ID   + +DQ +      +            L D           + +    +   +
Sbjct: 159 --PIDISLTLADQGV--DCQLKGFTAEGLAATEALLDFARDHGLARLALDQGYGAETVWE 214

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
            + V   L      L     +NSF QP       ++    A   G    + +L+ G G F
Sbjct: 215 PEPVTITLGSIPVGL----PQNSFRQPTRDGEQVLVSD-TAEFVGDARTVADLFAGLGTF 269

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +  L+     VLAVE A+ +  A +       V               AM R+   N L 
Sbjct: 270 AFALSDPAK-VLAVEAARDAHLACKTAANMRGVP------------VHAMHRDLFRNPLT 316

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341
             ++   RF  I +DPPR+G  +    + Q+    ++Y+SCNP S  RD+  L      +
Sbjct: 317 AEEVS--RFGAIVLDPPRAGAREQVAQIAQSTASRVVYVSCNPSSWARDVKTLVDAGFRL 374

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           E+L    QF ++ H+E      R
Sbjct: 375 EKLRPVGQFRWSTHVELTSYFTR 397


>gi|27377759|ref|NP_769288.1| RNA methyltransferase [Bradyrhizobium japonicum USDA 110]
 gi|50401761|sp|Q89RW4|Y2648_BRAJA RecName: Full=Uncharacterized RNA methyltransferase bll2648
 gi|27350904|dbj|BAC47913.1| RNA methyltransferase [Bradyrhizobium japonicum USDA 110]
          Length = 415

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 113/328 (34%), Gaps = 36/328 (10%)

Query: 44  RMRAEFH-IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           R R   H  +   D L        + + + I        L  AL   + A   L   L +
Sbjct: 117 RRRVTLHGRFGTHDILKVGFSAASSHDVIPIHRCPI---LDPALDGALDAAWALAEPLTS 173

Query: 103 KLFQIDYL----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
           K+     L    T+ ++   V +     L          L  AL     Q +L       
Sbjct: 174 KMPVTKPLDIQVTATTNGLDVDVRGSGPL-------PTPLVTALSRVAEQHRLARLTRHG 226

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
           ++ L R     ++     TL       SF Q         L  ++A   G   ++L+L+C
Sbjct: 227 ELVLQRLPPTVKMGRTEVTL----PPGSFLQA-TVAGEETLASLVAERVGKAKEVLDLFC 281

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G F+L LA    RV A +    +V A         +  ++                R+
Sbjct: 282 GVGPFALRLAEKA-RVTAYDSDAGAVAALAKAARTPGLKPIRC-------------EPRD 327

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-S 336
             R   +      F  +  DPPR G     + +  +  P I+ +SCN  +  RD  +L  
Sbjct: 328 LFRRPLVPQELRDFDAVVFDPPRQGAQAQALKLAASTVPVIVAVSCNVATFARDARLLID 387

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVR 364
             + I+ +   DQF +T H+E      R
Sbjct: 388 GGYRIDGVVPVDQFRHTPHVELVARFAR 415


>gi|163796973|ref|ZP_02190929.1| SAM-dependent methyltransferase [alpha proteobacterium BAL199]
 gi|159177720|gb|EDP62271.1| SAM-dependent methyltransferase [alpha proteobacterium BAL199]
          Length = 454

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 126/363 (34%), Gaps = 28/363 (7%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRS--EPIHYRMRAEFHIWHDGDDLYHIMFD 64
            D Y    A K D++R  +  F +    I      P   R RA   +            +
Sbjct: 115 TDPYA---AWKADQVRSHLRRFGLGETVIDAPVLSPPGTRRRATLSVRRLRGGAVLGFHE 171

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           +Q    + I         + A++            L         LT         L+  
Sbjct: 172 RQGNRIIDISECSVLEPALQAVLPAFREAFGTR--LAEGAEADLSLTLLDTGVDALLVLP 229

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRA-NKTKICLDRDYVDERLTVAGRTLIYRQI 183
              D A RE    L + L   +  ++  G   ++T+    R     R       +  R  
Sbjct: 230 EAPDLAAREAWAELAETLDLARLSLRRSGEGHDRTEPLAARRPTMIRFG----GIDVRPP 285

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             SF Q        + + V++A +G QG  L+L+CG G  SL L      V AV+    +
Sbjct: 286 AGSFLQATRAGETAIRDIVMSAAEG-QGWRLDLFCGVGTLSLPLVDGA-PVTAVDGDVQA 343

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + A R   AA+       +   +++         EF            F  +  DPPRSG
Sbjct: 344 IRALRA--AADAAALGDRLTTEARDLFDRPFEGDEFK----------GFDVVVFDPPRSG 391

Query: 304 LDDATVGMVQAYPHILYIS-CNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVL 361
             +    +  +   ++    CNP S  RD  IL    + +++L   DQF ++ H+E   +
Sbjct: 392 AKEQAEALAASSVPVVVAVSCNPASFARDARILIDGGYRLDKLTPIDQFLWSPHIELAAV 451

Query: 362 LVR 364
             R
Sbjct: 452 FRR 454


>gi|86751561|ref|YP_488057.1| (Uracil-5)-methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86574589|gb|ABD09146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas
           palustris HaA2]
          Length = 412

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 71/324 (21%), Positives = 123/324 (37%), Gaps = 30/324 (9%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQ-TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           R R   H      D+  + F    + + + ID+       ++  +    A      L+  
Sbjct: 116 RRRITLHARKGTHDVLKVGFSAAASHDVIAIDHCPILDPALDGAIEAAWALAEALTLIGK 175

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            L     +T+  +   V +     L         +L  AL     + +L       ++ L
Sbjct: 176 PL--DIQVTAAENGLDVDVRGSGPLPP-------KLIGALSLLAEKHRLARLTRHGELVL 226

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            R      +  A  TL       +F Q  A     + E  L+  K ++  + +L+CG G 
Sbjct: 227 MRTPPTIAIGSARVTL----PPGAFLQATALGEQTLAELALSEIKRVKL-IADLFCGVGP 281

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+L LA    RV+A +   P+V A +    A   + +K ++   ++     RR      L
Sbjct: 282 FALRLATKA-RVVAYDSDAPAVNALQKAAQA--TSGLKPIKAEPRDL---FRRPLAPPEL 335

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL-STTHT 340
            D       F  +  DPPR G       +     P I+ +SCN  +  RD  +L    + 
Sbjct: 336 LD-------FDAVLFDPPRQGAQAQAAQLAASKVPLIIAVSCNAQTFARDAKLLIDGGYR 388

Query: 341 IERLALFDQFPYTRHMECGVLLVR 364
           +E++   DQF YT H+E   +L +
Sbjct: 389 LEKVTPVDQFKYTPHVELVGVLRK 412


>gi|307292865|ref|ZP_07572711.1| (Uracil-5)-methyltransferase [Sphingobium chlorophenolicum L-1]
 gi|306880931|gb|EFN12147.1| (Uracil-5)-methyltransferase [Sphingobium chlorophenolicum L-1]
          Length = 402

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 109/313 (34%), Gaps = 27/313 (8%)

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
            G  +     +  +   + +         + AL+  + +      +L  K      ++  
Sbjct: 114 QGRKVVIGFAESGSHMLVDLTMCEILDPALFALLAPLRSLC--SAILPDKRAAHVRMSLT 171

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
                + L   R+   A  E    L      +      I   +  +   +     E +TV
Sbjct: 172 DQGVDLLLEGVRIEGLAADE---ALLAFAREQGLARLTIDEGDGPQTRWE----PEPVTV 224

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
               +       +F Q  +     ++     A    +G + +L+CG G F+L L  +   
Sbjct: 225 TFGGVPVAFPPFAFLQATSDGEAALVREARKAMPA-EGAIADLFCGLGTFALALGPN-RP 282

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V A E A+  V + +          V                 R+  R         RF 
Sbjct: 283 VYAAEAARDLVLSLKSAANRAGRRMV--------------ADHRDLFRRPLTPAEIDRFA 328

Query: 294 TIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFP 351
            I +DPPR+G  +  + +  ++ P I YISCNP S  RD + L+   + +E +    QF 
Sbjct: 329 GIVIDPPRAGAREQVLQLAASHVPVIAYISCNPASFARDAAHLTDGGYRLESVRPVGQFR 388

Query: 352 YTRHMECGVLLVR 364
           ++ H+E   +  R
Sbjct: 389 WSTHVELIGIFRR 401


>gi|114327982|ref|YP_745139.1| tRNA (Uracil-5-) -methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316156|gb|ABI62216.1| tRNA (Uracil-5-) -methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 413

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 124/371 (33%), Gaps = 43/371 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP----NLQIFRSEPIHYRMRAEFHIWHDGDD 57
            G  +    +  L  K  ++   + A            ++S P   R R +F +   G  
Sbjct: 76  GGCAMQHTDDGGLGWKAGQVASALKAVAPDVLSDAFSTWQSPP-AVRRRIDFGLRRSGKT 134

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
           +   +   ++ E + I +       +  L+  +   +    LL+    +   + + ++  
Sbjct: 135 VRVGLHRARSAEIVDIQHCPVIDPSLMELIAALRIVLPTLALLKR---EGSAVANMTENG 191

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I  L+    L     E    L    H             +      R  V  +L     T
Sbjct: 192 IDLLLRTDRLPSV--EDRTLLAAFAHQHGLARISWAEGER-----GRPEVLCQLRDPVIT 244

Query: 178 LIYRQ---IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
                      +F Q +      ++  + A     +  ++EL+ G G F+L L       
Sbjct: 245 FSGHSITAPPGAFLQASRAAEDAIMAAIEAGLPKKRRKIVELFAGIGTFTLRLKPG---- 300

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +A E  + +V A +       +                    R+  R             
Sbjct: 301 MAYEGDEAAVAAVKR-AGFGQIT------------------RRDLFRQPLQAAELRGVDV 341

Query: 295 IFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
           + +DPP +G       + QA  P I+Y+SCNP +L RD ++L+   + +   ++ DQF +
Sbjct: 342 VILDPPHAGAAAQCATLAQAKVPRIIYVSCNPHALRRDATLLAGAGYRLVSASVIDQFLW 401

Query: 353 TRHMECGVLLV 363
           +  +E   +  
Sbjct: 402 STQIETVAVFS 412


>gi|302866101|ref|YP_003834738.1| deoxyribonuclease/rho motif-related TRAM [Micromonospora aurantiaca
           ATCC 27029]
 gi|302568960|gb|ADL45162.1| deoxyribonuclease/rho motif-related TRAM [Micromonospora aurantiaca
           ATCC 27029]
          Length = 420

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 121/367 (32%), Gaps = 74/367 (20%)

Query: 12  QQLAEKVDRLRQMMLAFQV----------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
            QL  K+  +R+ +                 ++     P+ +R R  + +          
Sbjct: 107 AQLDWKLSVVREQLTRLGGLTAEQIDALGVRIEALPGGPLGWRSRVRYAV---DAAGRAG 163

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           +   ++ E + ID  +     I  L +                                 
Sbjct: 164 LLKHRSHEVVPIDRCLIAHPAIQDLPV--------------------------------- 190

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
               L     R       + + +    + ++   +     +      ER+        + 
Sbjct: 191 ----LPPTGARWPDADAVETVASTGGDVAVVAYTDGVPTAVSGP---ERVRETAAGRSFT 243

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF--DRVLAVE 238
              + F Q +      +   VL       G+   +LY G G F+  LA      RV  VE
Sbjct: 244 LPASGFWQVHPAAADALTGAVLDLLDPRPGETAWDLYGGAGLFAAALAERVDGARVTLVE 303

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            A   V AAR N+A     +++ V + +     A+ R R           +     + +D
Sbjct: 304 SAPDGVAAARQNLA-----DLRAVEVVAARVEAALSRRR----------ITGPVDLVVLD 348

Query: 299 PPRSGLDDATV-GMVQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRH 355
           PPRSG     V G+V A P  + Y++C+P +  RD+   +     +  L  FD FP T+H
Sbjct: 349 PPRSGAGAPVVRGVVAAGPRAVAYVACDPAAFARDVRTFAEAGWRLAALRGFDLFPMTQH 408

Query: 356 MECGVLL 362
           +E   L 
Sbjct: 409 VELVGLF 415


>gi|67603988|ref|XP_666584.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54657609|gb|EAL36357.1| hypothetical protein Chro.20288 [Cryptosporidium hominis]
          Length = 354

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/262 (19%), Positives = 90/262 (34%), Gaps = 54/262 (20%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH     +            LD  +   +++   R         SF Q N      +   
Sbjct: 82  LHQSDSIVDTFDIGK-----LDLLHGSPQISFKIRNTELFIGPLSFFQTNTKGCETLYNE 136

Query: 202 VLA--------------ATKGIQGDLLELYCGNGNFSLVL-------ARHFDRV--LAVE 238
           +                  K  +  +L++ CG G   L L        R+F  V  + ++
Sbjct: 137 IRKVIEIKLLENLKKNENLKKKKLIILDICCGVGAIGLTLLDIFRDLGRNFGDVELIGID 196

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            ++ ++ +A+ N     + N K    +++            N L              VD
Sbjct: 197 CSREAINSAKKNAENIGIENAKYYTGTAESILPNFLENLPSNNL----------VIAIVD 246

Query: 299 PPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTTHTI-------------E 342
           PPRSGL  + +  ++    I   +Y+SCN +SL ++   L + +               E
Sbjct: 247 PPRSGLHSSVIKSLRKMAKIEYLIYVSCNVESLVKNCIELCSAYDPHTDQQEYFPVFFPE 306

Query: 343 RLALFDQFPYTRHMECGVLLVR 364
                D FP+T+H+E  + L R
Sbjct: 307 CAVPVDMFPFTKHVETILYLKR 328


>gi|224543595|ref|ZP_03684134.1| hypothetical protein CATMIT_02804 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523467|gb|EEF92572.1| hypothetical protein CATMIT_02804 [Catenibacterium mitsuokai DSM
           15897]
          Length = 397

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 131/383 (34%), Gaps = 43/383 (11%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWH 53
           M   L    Y  QL  K + L++ +  +   +++       +   EP HYR    F I +
Sbjct: 40  MGCALKHMNYADQLVHKRELLKETLHKYTDLSVKDLDIKPVVGMKEPEHYRHIVAFPITY 99

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQ 106
               L   ++ ++TK    +D+    +  IN+L++++   +             +   F 
Sbjct: 100 FSGKLCVGVYQRETKFLTLMDHCPLQTQKINSLLVKIEDILNANKCRDYNDKFKKGLRFL 159

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAI--RLRDALHARKYQIQLIGRANKTKICLDR 164
           I     +  Q         +     +E A    +    +               K    +
Sbjct: 160 IIRQIGEEMQVAFVTGQDGISQTVTKEIAALDEVTALYYTVNTSRYQDFYEQGFKRIYGQ 219

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
            +   +         ++    S    N  ++      + +     + D+L + CG+G   
Sbjct: 220 THAQYK--------DFKISVRSDMILNPEMDDEKTRQIASL-LDKKEDVLSMGCGSGIME 270

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           L L    ++V+A++  K S+  A  N     ++N   +                 N    
Sbjct: 271 LQL---ENKVVAIDDNKVSIHDATENAKRLELDNKLFIAGHV-------------NDQAA 314

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342
             + ++ +  + ++    G+ D  +    +    H++ +S N  +L + L  L     + 
Sbjct: 315 HHLKNHSYDALIINETVDGMTDDLLKSITLSGIKHVIIVSDNMSTLAKTLHQLEEMFDVN 374

Query: 343 RLALFDQFPYTRHMECGVLLVRK 365
            +   D+ P+T  +E  V L RK
Sbjct: 375 TIISLDKEPHTPRLEIIVDLKRK 397


>gi|294085814|ref|YP_003552574.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665389|gb|ADE40490.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 448

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 126/359 (35%), Gaps = 33/359 (9%)

Query: 16  EKVDRLRQMMLAFQVPNLQI--FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
            K D +   +    +   Q+   +S P   R RA F +    D       ++ +   +  
Sbjct: 112 WKHDLVAHFLSRHDLEPDQMRPMQSSPPASRRRATFQVKRMKDSAIVGFHERNSHHIVA- 170

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
                G +++   +I++ + +         L   + LT+ ++     L       D W  
Sbjct: 171 ---PDGCVILEPALIDLQSALHDFASTH--LDAGNVLTAHANLLDNGLCVLLSGQDKWPS 225

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT-VAGRTLIY-----RQIENSF 187
             +       ++     +   A   ++ ++  +V   L       + +          +F
Sbjct: 226 SLLAALTDWASK----PIFAGAPLARLSVNDGHVPMLLFAPTPAEIRFGDIGIDPPAGAF 281

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            Q         L+  +A        +++L+ G G  S+ L      +LAVE    S+ A 
Sbjct: 282 LQATQHGEAS-LQAAVAEITAGASRVIDLFAGCGTLSVPLVSQLTHLLAVEQDAASLAAL 340

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +    AN       V+   ++   A  +  + +           F    +DPPR+G    
Sbjct: 341 K--AGANKAKCGARVKTMQRDLMNAPIQPVDLD----------HFDAAIIDPPRNGAAAQ 388

Query: 308 TVGM-VQAYPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
              + +   P I  +SCNP +  RD   L+   + ++ + + DQF ++ H+E      +
Sbjct: 389 CAELALSNIPVIAMVSCNPATFARDAEALTYGGYRLDWMQIIDQFLFSNHLEIVARFTK 447


>gi|296536690|ref|ZP_06898754.1| tRNA (uracil-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
 gi|296262981|gb|EFH09542.1| tRNA (uracil-5-)-methyltransferase [Roseomonas cervicalis ATCC
           49957]
          Length = 411

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/358 (19%), Positives = 129/358 (36%), Gaps = 31/358 (8%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
             K  RL + +     P+  +  +    P   R RA+  +    D    + F  +    +
Sbjct: 75  DWKRARLAEALSRAGFPDAPVAPTRVTPPAT-RRRADLAVRRRPDGSVVLGFHARGGAAV 133

Query: 72  -RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
             +         + AL   +   +R  P  R +   +  L       ++ L     + D 
Sbjct: 134 EDLSTCHVLDPALVALFEPLRTLLRGLPAFRREGSAVLNLLDSGPDLLLRLDGPPGVADR 193

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
               A   R  L  R     L G+  +T   L        +++A           +F Q 
Sbjct: 194 ATLAAFAARHGLP-RIAGGPLKGQGTETLAQLG------PVSIAFAGASVAPPPGAFLQA 246

Query: 191 NAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
                  ++E VL     + G   ++EL+ G G  S  LA    RV+A E A  +V A  
Sbjct: 247 TPQGEAAIVEAVLDGLPKLTGKARIVELHAGLGTLSFPLAAKA-RVIAYEGAPEAVAALD 305

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                                 QA+RR+     L   ++  +    + +DPP +G  +  
Sbjct: 306 AAARRGGAK------------IQAVRRDLVRQPLSVKELEGH--AALVLDPPFAGAAEQI 351

Query: 309 VGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
             + ++    ++Y+SCNP +L RD  +L +    +++    DQF ++  +E  V+  R
Sbjct: 352 PALAKSTLSRVIYVSCNPVALARDAKLLHAAGFRVQQATPVDQFLWSAQLEAVVVFAR 409


>gi|260578853|ref|ZP_05846759.1| SAM-dependent methyltransferase [Corynebacterium jeikeium ATCC
           43734]
 gi|258603000|gb|EEW16271.1| SAM-dependent methyltransferase [Corynebacterium jeikeium ATCC
           43734]
          Length = 455

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 124/374 (33%), Gaps = 51/374 (13%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRS--------EPI-HYRMRAEFHIWHDGDDLYHIMFD 64
           L  K   +   ++     + +  +         EP    R R    +  +G+        
Sbjct: 100 LDYKKQVVLDQLVRVGKMDAETLQKITVSTESLEPFIGSRTRVRLAVDGEGN---VGQRV 156

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           + +   + +D   P +    +L   +   I     +   +   +   + SD         
Sbjct: 157 RGSHRVVPVDS--PCAQWSKSLQEGLAEEIEQLRTVGKLVPNSEIAVAVSDDG-----TR 209

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R++    +   +R+     +        G        +      +R       + +    
Sbjct: 210 RMVQLQGQPSNLRVTAFAPSGAGSNGSAGEIPTVSRTVHFGAGLDR----EFDVQWHSQV 265

Query: 185 NSFTQPNAGINVHMLEWVLAATKGI------------QGDLLELYCGNGNFSLVLARHFD 232
             F Q +         W+      +            Q    +LY G G FS VL+R  +
Sbjct: 266 QDFWQAHRAAPEFYASWIARHIPPVAQGEKTQGVNHKQSVAWDLYGGAGVFSAVLSRKAE 325

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           RV+ V++A  + ++    +AA  ++NV+ V          + R                 
Sbjct: 326 RVVCVDVAGSASKSGVKAMAAAGIDNVEFVDGDVAGQVPQLPR-------------GGSL 372

Query: 293 KTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQ 349
             + +DPPR+G        + +A P  ++++ C+P +  RDL+  +   + I+ L + D 
Sbjct: 373 HAVVLDPPRTGAGTQTVADIAKARPRHVVHVGCDPATAARDLAAWIDNGYAIKELCVVDA 432

Query: 350 FPYTRHMECGVLLV 363
           F    H+E    LV
Sbjct: 433 FGLNHHVELLAYLV 446


>gi|68536156|ref|YP_250861.1| putative SAM-dependent methyltransferase [Corynebacterium jeikeium
           K411]
 gi|68263755|emb|CAI37243.1| putative SAM-dependent methyltransferase [Corynebacterium jeikeium
           K411]
          Length = 446

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 124/374 (33%), Gaps = 51/374 (13%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRS--------EPI-HYRMRAEFHIWHDGDDLYHIMFD 64
           L  K   +   ++     + +  +         EP    R R    +  +G+        
Sbjct: 91  LDYKKQVVLDQLVRVGKMDAETLQKITVSTESLEPFIGSRTRVRLAVDGEGN---VGQRV 147

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           + +   + +D   P +    +L   +   I     +   +   +   + SD         
Sbjct: 148 RGSHRVVPVDS--PCAQWSKSLQEGLAEEIEQLRTVGKLVPNSEIAVAVSDDG-----TR 200

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R++    +   +R+     +        G        +      +R       + +    
Sbjct: 201 RMVQLQGQPSNLRVTAFAPSGAGSNGSAGEIPTVSRTVHFGAGLDR----EFDVQWHSQV 256

Query: 185 NSFTQPNAGINVHMLEWVLAATKGI------------QGDLLELYCGNGNFSLVLARHFD 232
             F Q +         W+      +            Q    +LY G G FS VL+R  +
Sbjct: 257 QDFWQAHRAAPEFYASWIARHIPPVAQGEKTQGVNHKQSVAWDLYGGAGVFSAVLSRKAE 316

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           RV+ V++A  + ++    +AA  ++NV+ V          + R                 
Sbjct: 317 RVVCVDVAGSASKSGVKAMAAAGIDNVEFVDGDVAGQVPQLPR-------------GGSL 363

Query: 293 KTIFVDPPRSGLD-DATVGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQ 349
             + +DPPR+G        + +A P  ++++ C+P +  RDL+  +   + I+ L + D 
Sbjct: 364 HAVVLDPPRTGAGTQTVADIAKARPRHVVHVGCDPATAARDLAAWIDNGYAIKELCVVDA 423

Query: 350 FPYTRHMECGVLLV 363
           F    H+E    LV
Sbjct: 424 FGLNHHVELLAYLV 437


>gi|85708796|ref|ZP_01039862.1| putative RNA methyltransferase [Erythrobacter sp. NAP1]
 gi|85690330|gb|EAQ30333.1| putative RNA methyltransferase [Erythrobacter sp. NAP1]
          Length = 255

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 26/217 (11%)

Query: 159 KICLDRDYVDERL------TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
           ++ +D+ Y  E +      TV+   +       +F Q        M+     A  G    
Sbjct: 54  RLTIDQGYGPETVWEPEPATVSLSGIPVALPAGAFLQATQDAEDLMVSDARIA-LGDARI 112

Query: 213 LLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + +L+ G G F+  LAR      +VLAVE  + +  A + + A +               
Sbjct: 113 VADLFAGLGTFAFGLARSGPEGRKVLAVEADQSAHLACKASAARSG-------------- 158

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSL 328
            + +   R+  R         RF  + +DPPR+G       + ++  P  +YISCNP S 
Sbjct: 159 GRVLTTHRDLFRNPLQAEELSRFDGVLLDPPRAGAKAQISQLAKSDCPRTVYISCNPSSW 218

Query: 329 CRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            RD ++L    + +E L    QF ++ H+E   +  R
Sbjct: 219 ARDAAVLCEAGYQLETLRPVGQFRWSTHVELVSVFSR 255


>gi|111221522|ref|YP_712316.1| putative RNA methyltransferase [Frankia alni ACN14a]
 gi|111149054|emb|CAJ60736.1| putative RNA methyltransferase [Frankia alni ACN14a]
          Length = 581

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 17/194 (8%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA---RHFDRV 234
            ++   + F Q + G    ++  V  A +   G+  L+LY G G F+  LA       RV
Sbjct: 345 RFQLGPDVFWQVHPGAPRVLVAAVRDALRPGPGETALDLYAGAGLFAAFLAVDVGSGGRV 404

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +A+E    +V AA  ++A     ++  V + S   T A  R    +        + R   
Sbjct: 405 VAMESDAAAVAAAARSLA-----DLPQVSLRSVRVTPATVRGVIGS-----GPTAGRVDI 454

Query: 295 IFVDPPRSGLDDATVGMVQAY-PH-ILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
             +DPPR+G   A +  + A+ P  + Y++C+P +L RDL+  S   + +  L  FD FP
Sbjct: 455 AVLDPPRTGAGPAVMAALLAHHPRAVAYVACDPVALGRDLAAASESGYELVSLRAFDLFP 514

Query: 352 YTRHMECGVLLVRK 365
            T H+EC  LL  +
Sbjct: 515 MTAHVECVALLKPR 528


>gi|88855673|ref|ZP_01130336.1| 23S rRNA methyltransferase/RumA [marine actinobacterium PHSC20C1]
 gi|88814997|gb|EAR24856.1| 23S rRNA methyltransferase/RumA [marine actinobacterium PHSC20C1]
          Length = 410

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 125/371 (33%), Gaps = 80/371 (21%)

Query: 13  QLAEKVDRLRQMMLAFQ----VPNLQIFRSEP----IHYRMRAEFHIWHDGDDLYHIMFD 64
           Q   K   L + +         P ++    +     + +R R   H+   G+      F 
Sbjct: 100 QRTLKAQILGESLERMAQLTLAPEVEAVPGDDERNGLGWRTRVSLHVDEAGN---VGPFA 156

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
            ++   + +      +  ++A              L       D +              
Sbjct: 157 ARSHRVIPVADLPLATPELSAGAP-----------LSENFAGFDRV-------------- 191

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
                          D L+     ++LI    K ++      + E +     TL    ++
Sbjct: 192 ---------------DILNPSSGGVRLIMGKQKPQV------ITETVGEREFTL----LD 226

Query: 185 NSFTQPNAGINVHMLEWVLAATKG----IQGDLLELYCGNGNFSLVLARHFD---RVLAV 237
           + F Q + G    +   V  A            L+LY G G F+  +   F    ++ +V
Sbjct: 227 SGFWQVHHGAAEVLTAAVQDAIDPELFDPAASNLDLYGGVGLFAAAVGDKFGPSTKITSV 286

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS-YRFKTIF 296
           E    + + A  N++            +  E  +  R  RE  +       S     TI 
Sbjct: 287 ESDAIATDHAAKNLSE--------WLGAHAETGRVDRWLRELLKNASAAERSRLERSTIV 338

Query: 297 VDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYT 353
           +DPPRSG     V ++ A     ++Y++C+P +  RD++  +   +T+ ++  FD FP+T
Sbjct: 339 LDPPRSGAGREVVELLTAARPAQVVYVACDPVAFARDVAFFTNRGYTLAKVRAFDLFPHT 398

Query: 354 RHMECGVLLVR 364
            H+E      R
Sbjct: 399 HHVEAVGTFTR 409


>gi|90420130|ref|ZP_01228038.1| putative RNA methyltransferase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335464|gb|EAS49214.1| putative RNA methyltransferase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 408

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 116/354 (32%), Gaps = 32/354 (9%)

Query: 15  AEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           A K D +   +    +   +    + P   R R        G  ++       + + + I
Sbjct: 83  AFKRDVVVDALARAGLETEIAALVACPPASRRRVALSAVGAGKSVHLGFNAAHSDQIVPI 142

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           +        I   +  +     L    R  L     +T        T      L +  R 
Sbjct: 143 EVCPIALPAIQRALPALQRLAALLADRRTPLKLTVTVTDTGLDVAATAAP--KLAEGKRR 200

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
            AI L  +    +  +      +   + + R       +++   +       +F Q  A 
Sbjct: 201 QAIALAVSESFARLTV------DGEILVMTRPP-----SISFDGITVELPPGAFVQAVAA 249

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               M   V     G +  + +L+ G+G F+L LA    RV AVE     + A       
Sbjct: 250 AETAMASRVTKHLAGAKH-VADLFSGSGTFALRLAVQ-SRVHAVESEAAPLAAMTAAWRT 307

Query: 254 N-HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              +  +   R             R+  R          +  +  DPPR+G +  +  + 
Sbjct: 308 RPGLKPLTTER-------------RDLYRRPIPAKELKAYDGLVFDPPRAGAEAVSQEIA 354

Query: 313 Q-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
                 +  +SCNP ++ RDL IL      +  +   DQF ++RH+E   LL R
Sbjct: 355 ASKISRVAAVSCNPVTMARDLRILVDGGFRLVEVTPVDQFLWSRHVEAVALLER 408


>gi|159465141|ref|XP_001690781.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii]
 gi|158279467|gb|EDP05227.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii]
          Length = 746

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 102/331 (30%), Gaps = 61/331 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-------------------LQIFRSEPIH 42
             TL    Y +QL EK +++ Q +                            +  +E   
Sbjct: 408 GCTLQSLDYSRQLVEKRNQVEQTLRRVGKLGPALDAIAVARGAGETTGVLPAVAAAETYA 467

Query: 43  YRMRAEFHI--------WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATI 94
           YR +  FH             D     +    + + + +     G  L +     ++  +
Sbjct: 468 YRNKLMFHFSSRCWLPPSKVVDRPALGLLRPGSADVV-LPVTQHGCQLQDETANAVLKRV 526

Query: 95  RL---------------EPLLRAKLFQIDYLTSQSD--QAIVTLIYHRLLDDAWRECAIR 137
                            + +L+  + +    +S S   + +V         D        
Sbjct: 527 EQWVAAAGVKPYNDKSGKGILKHVVIRRGSGSSGSSKPEYMVVFGVTTTNGDEAAAALQP 586

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           L +AL      +  +  A          ++ + L      L ++    SF Q N      
Sbjct: 587 LAEALGREFPTLVSVAAA---------YHITDTLG----GLTFQISAASFFQTNTAQAAV 633

Query: 198 MLE---WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           + +      A   G Q  L++LYCG G  SL LA     VL VE    +V  AR N   N
Sbjct: 634 LYDVVRQAAALRPGRQDSLVDLYCGTGTISLSLAPECKSVLGVEAVAAAVSDARLNARLN 693

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
             +N   V   +++  +    +    RL  +
Sbjct: 694 GASNALFVAAGARDLDRLCNGDDAPYRLTAV 724



 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 329 CRDLSILSTT----HTIERLALFDQFPYTRHMECGVLLVR 364
            RDL  L       + +  +   D FP+T H+E   +L R
Sbjct: 705 ARDLDRLCNGDDAPYRLTAVTPVDMFPHTDHVETVAVLER 744


>gi|312113130|ref|YP_004010726.1| (uracil-5)-methyltransferase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218259|gb|ADP69627.1| (Uracil-5)-methyltransferase [Rhodomicrobium vannielii ATCC 17100]
          Length = 443

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 131/359 (36%), Gaps = 38/359 (10%)

Query: 15  AEKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           A K   +   +     + P+++  ++ PI  R RA F    D   L       ++ + + 
Sbjct: 101 AWKAGLVEAALAQARVRAPSVETRKTYPISSRRRAAFTARKDEGALRLGFNAARSHDLVD 160

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I+     S  + A +  + A +R                +   +A + +       D   
Sbjct: 161 IEECPILSPQLAAALPHLRAGLRG-------------AMADRGEAKIQVAAVDNGLDVAI 207

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLTVAGRTLIYRQIENSFTQP 190
                   A HA + ++Q    A+  +   + +  ++     V    +       +F Q 
Sbjct: 208 AGPRLASSARHALESELQ---AADAIRASWNGEALFISGVPRVGFGGVRVSLPGGAFLQA 264

Query: 191 NAGINVHMLE---WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                  M       L A    +G + +L+ G G F+  +A              SV A 
Sbjct: 265 VEACERDMGAFTVEALDAAGAGKGPVCDLFAGLGAFTFPVATRA-----------SVTAY 313

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N AA    +         +  +A+RR+   + L   ++++  F    +DPPR G +  
Sbjct: 314 EDNAAAVAALSAAAKESKGLKPVKAIRRDLFRSPLGFQELNA--FAAAVLDPPREGAEAQ 371

Query: 308 TVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
              + Q   P  + +SCNP +  RD +IL      + RLA FDQF Y+ H+E   L  R
Sbjct: 372 ARALAQSKIPAAVMLSCNPATFARDAAILAEGGFELTRLAAFDQFRYSAHVEVAALFRR 430


>gi|255017119|ref|ZP_05289245.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           FSL F2-515]
          Length = 149

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              L++ YCG G      A     V  ++I   S+E A+ N   N + NV      +++ 
Sbjct: 3   SETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDV 62

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDS 327
                +E             +R   + VDPPRSG D   +  +       ++Y+SCNP +
Sbjct: 63  LPKWVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPST 110

Query: 328 LCRDLSILST 337
           L RDL++L  
Sbjct: 111 LARDLALLXE 120


>gi|149912911|ref|ZP_01901445.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           AzwK-3b]
 gi|149813317|gb|EDM73143.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseobacter sp.
           AzwK-3b]
          Length = 413

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 106/317 (33%), Gaps = 39/317 (12%)

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-----RAKLFQIDY 109
                  ++ + +   + I               ++M  + +   L       K      
Sbjct: 128 KKGAMAGLYARGSDVMVEIPECRL-------FHPDLMKALPVAEELATIGASRKQTLAVA 180

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
           +T   +   + +   + LD   R     L +          L   +   ++ + R   ++
Sbjct: 181 VTMSRNGLDIAVSNGKPLDGPMRRDLAALAERH-------DLARLSFDDEVVVTRAPPEQ 233

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
           R       ++      +F Q        +   V     G    + +L+ G G F+L LAR
Sbjct: 234 RFG----DVVVTPPSGAFLQATQEGEDALRADV-RRIVGAARRVADLFAGCGTFALPLAR 288

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V AVE      +AA  +           ++  + E     RR    + L       
Sbjct: 289 DMA-VHAVEG-----DAAMMSALDAGWRRTPGLKAVTHETRDLFRRPLLPDELAP----- 337

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQA-YPHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             F  + +DPPR+G    T  +  +  P I Y+SCNP +  +D   L    + +  + + 
Sbjct: 338 --FDAVVLDPPRAGASAQTAQICASSVPVIAYVSCNPVTFAKDARQLIDHGYRLVSIRVV 395

Query: 348 DQFPYTRHMECGVLLVR 364
           DQF ++ H+E      R
Sbjct: 396 DQFRWSSHVELVAEFRR 412


>gi|329927629|ref|ZP_08281776.1| hypothetical protein HMPREF9412_2984 [Paenibacillus sp. HGF5]
 gi|328938327|gb|EGG34718.1| hypothetical protein HMPREF9412_2984 [Paenibacillus sp. HGF5]
          Length = 108

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 15/119 (12%)

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N   N + +V+    +S++     +                    I VDPPR G D   
Sbjct: 1   ANAELNGMKHVEFEVGASEDVIPRWKE------------QGIEADVIVVDPPRKGCDPRL 48

Query: 309 VGMVQAYP--HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +  +       ++Y+SCNP +L RDL +L    ++   +   D FP+T H+E   +LVR
Sbjct: 49  LETILEMKPERVVYVSCNPSTLARDLRMLEDGGYSTVEVTPVDMFPHTVHVESVAVLVR 107


>gi|257485908|ref|ZP_05639949.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 125

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 14/134 (10%)

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V+AVE     VE A  N  +N ++NV+  +    +             L   D  +  
Sbjct: 1   KEVVAVEGVATMVERAAVNAISNDLHNVQFFQADLSQ------------PLTHADWAAEG 48

Query: 292 FKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQ 349
           F  + +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D 
Sbjct: 49  FSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDM 108

Query: 350 FPYTRHMECGVLLV 363
           FP T H+E   L  
Sbjct: 109 FPQTAHVEAMALFE 122


>gi|289641282|ref|ZP_06473448.1| deoxyribonuclease/rho motif-related TRAM [Frankia symbiont of
           Datisca glomerata]
 gi|289508880|gb|EFD29813.1| deoxyribonuclease/rho motif-related TRAM [Frankia symbiont of
           Datisca glomerata]
          Length = 537

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 22/201 (10%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +    R   +R     F Q + G    +++ VL       G+  L+LY G G F+  LA
Sbjct: 345 EIVEVVRGRRFRLGPGVFWQVHPGAPETLVDAVLTGLAPRAGERALDLYAGAGLFAAALA 404

Query: 229 RHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                   V+A+E    +V +A  ++                +  Q   R    +     
Sbjct: 405 EAVGPDGTVVAMESDPAAVASAARSL---------------GDLPQVSLRGVRVSPGSLR 449

Query: 286 DIHSYRFKTIFVDPPRSGLDDAT-VGMVQAYPH-ILYISCNPDSLCRDLSI-LSTTHTIE 342
            +       + +DPPR+G   A  + ++   P  + Y+SC+P SL RDL++ ++  +++ 
Sbjct: 450 GLAGTGADIVVLDPPRAGAGRAVMLALLALRPRAVAYVSCDPASLARDLAVAVTQGYSLV 509

Query: 343 RLALFDQFPYTRHMECGVLLV 363
            L  FD FP T H+EC  ++V
Sbjct: 510 TLRAFDLFPMTAHVECVAIMV 530


>gi|146278673|ref|YP_001168832.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase-like protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556914|gb|ABP71527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 404

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 125/355 (35%), Gaps = 36/355 (10%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             K + +R  +    +      +  S P   R RA                 +Q+   + 
Sbjct: 77  RWKQEVVRSALAGQGLEAPFRPMAVSPPAT-RRRAVLSGRRTKGGALVGFHARQSGTIIP 135

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I         +   +  +   +R       +L     +T       V +   + LD   R
Sbjct: 136 IPECKLLHPDLMQTIPALETLVRAAGSRSGEL--SLTVTRSLGGPDVAVTGGKALDAPLR 193

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQP 190
               R+     A +  +  +    +T I L       R+  A      R +    +F Q 
Sbjct: 194 AELARI-----AEERSLARLTWEGET-IAL-------RVPPAQAFGAARVVPPAGAFLQA 240

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
            A     +L  V  A  G    + +L+ G G F+L LA   +      +     +AA   
Sbjct: 241 TAEGEAALLAAVRDAI-GEARTVTDLFAGVGTFALPLAAAAE------VHAVEGDAAMTE 293

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    + ++  + E     RR  E + L+       R + + +DPPR+G +     
Sbjct: 294 ALDRGWRQAQGLKRVTVETRDLFRRPLEPDELR-------RAEAVVIDPPRAGAEAQCAA 346

Query: 311 MVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           + +A  P I ++SCNP +  RD ++L    + ++ + + DQF ++ H+E    L 
Sbjct: 347 LARARVPVIAFVSCNPVTFARDAALLVRAGYRLDWVQVVDQFRWSAHVELAARLS 401


>gi|218194201|gb|EEC76628.1| hypothetical protein OsI_14559 [Oryza sativa Indica Group]
          Length = 805

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 112/321 (34%), Gaps = 55/321 (17%)

Query: 5   LLIDQYEQQLAEKVDRLRQMML----------AFQVPNLQ-IFRSEPIH----------- 42
           L    Y  QL  K + + Q++              +P    +F+S+ I            
Sbjct: 264 LAHMSYNDQLEHKNNSVAQILKRLTRNARKACPTGIPLPDWVFKSKEIGGLPCKLEGILE 323

Query: 43  ------YRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA--------LMI 88
                 YR + EF +           F  + K+ +R       ++  NA        L++
Sbjct: 324 SPVINGYRNKCEFSVG----------FSLEGKKTVREGRCRAQAVAQNAETQISEVMLIV 373

Query: 89  EMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ 148
           ++ +T   + +++    + D LT    Q   T      L     +    + +A  A    
Sbjct: 374 QVCSTGVDDAVMKD---EFDKLTVALQQGAATCSPPLPLTTIVVQDHKGISNAAPADCPL 430

Query: 149 IQLIGRANKTKICLDRDYVDE-RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           I L+      K+      VD+ R+      L +     +F Q N      +         
Sbjct: 431 IPLLVP----KVDQSEGTVDKTRIHDHIGNLWFSISPTAFFQVNTLAAERLYTLAGDWAN 486

Query: 208 GIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
              G LL ++ CG G   L LA     V+ +E+ + +V  A  N   N V+N + V   +
Sbjct: 487 LNSGTLLFDVCCGTGTIGLTLAHRVGMVVGIEMNESAVSDAERNALINGVSNCRFVCGKA 546

Query: 267 KEFTQAMRREREFNRLKDIDI 287
           ++   ++  E   +  +DI +
Sbjct: 547 EDVMGSLLTEYLGSPQQDIPV 567



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 40/123 (32%), Gaps = 38/123 (30%)

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILS 336
           N +       +      VDPPR GL    +  ++ +P I   +YISCNPDSL  +   L 
Sbjct: 683 NDVTAATACQFEDIVAIVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPDSLVANAIELC 742

Query: 337 -----------------------------------TTHTIERLALFDQFPYTRHMECGVL 361
                                                   +R    D FP+T H E  +L
Sbjct: 743 TPSSEKQEKNKGNRGWRTMSSAGLARQRTKSMPNSEPFVPKRAMAVDLFPHTSHCEMVML 802

Query: 362 LVR 364
             R
Sbjct: 803 FER 805


>gi|145342758|ref|XP_001416256.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576481|gb|ABO94549.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 234

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 115/246 (46%), Gaps = 28/246 (11%)

Query: 137 RLRDALHARKYQIQLIGRANKT--KICLDRDYVDER-LTVAGRTLIYRQIENSFTQPNAG 193
              +A+ A    +    R  K   K+ + RDYV E    V GR+++++ +E SF+ PN G
Sbjct: 2   EFAEAMRALDDAVVGCVRKRKKTPKLVVGRDYVTETTRLVDGRSVVFKHVEGSFSNPNGG 61

Query: 194 INV----HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAAR 248
           +      H++  + A   G +   +ELY G GN +  +A  F     AVEI    VEAAR
Sbjct: 62  VAELTANHLV-RICADIAGPKTKFIELYAGCGNHTCCMAPQFPGGAFAVEIDPVLVEAAR 120

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N A N V   +IV   ++++  +                + R   + VDPPR GLD  T
Sbjct: 121 ENFARNGVR-AEIVCERAEDWIASRESP-----------TNDRDVVLLVDPPRGGLDART 168

Query: 309 VGMV-QAYPHILYISCNPDSLCRDLS-----ILSTTHTIERLALFDQFPYTRH-MECGVL 361
           + +V + +  ++Y++C+ +SL RD+        +    +  LA FD  P +   +E   +
Sbjct: 169 LDVVTREFDDVIYVACDCESLKRDIDDERVGFAARGFELTSLACFDHAPTSPRWIETVGV 228

Query: 362 LVRKPS 367
             R+ +
Sbjct: 229 FKRREA 234


>gi|307719372|ref|YP_003874904.1| hypothetical protein STHERM_c16950 [Spirochaeta thermophila DSM
           6192]
 gi|306533097|gb|ADN02631.1| hypothetical protein STHERM_c16950 [Spirochaeta thermophila DSM
           6192]
          Length = 371

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 22/198 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVL 227
           E   V     ++    + F Q N  +   +LEWV      G  G+  +LY G G FS VL
Sbjct: 190 EEFRVEVGGYVFFGRTDLFFQSNLFVLERLLEWVEGVVSAGDGGEAWDLYAGVGVFSQVL 249

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           AR   R   VE A  ++  A   +          V +S++ F +  R             
Sbjct: 250 ARRGWRPRLVESAVAALGYAERGLG----GGAAYVGVSAERFLRGYR------------- 292

Query: 288 HSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYISCNPDSLCRDLSIL-STTHTIERL 344
                  +  DPPRSG      G    Q  P ++YISCN  +  RD++ L    + + RL
Sbjct: 293 -GGVPGVVVADPPRSGFSRTVRGFFEAQRVPLLVYISCNAATFARDVAHLMRAGYRLARL 351

Query: 345 ALFDQFPYTRHMECGVLL 362
           A FD +P T HME   +L
Sbjct: 352 AFFDFYPQTPHMEVAGVL 369



 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 5/85 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
              L    YE Q+A K   L + +    V   P  +++      YR R  F +  +G   
Sbjct: 80  GCVLQHVAYEHQVAVKRGWLEEHLRREGVREVPGCEVYEGPAYGYRSR--FQVHIEGGRA 137

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLI 83
             +  D         +   P    I
Sbjct: 138 GFLRRDLTHLAVEGCEVAHPACAPI 162


>gi|149918280|ref|ZP_01906771.1| RNA methyltransferase [Plesiocystis pacifica SIR-1]
 gi|149820806|gb|EDM80215.1| RNA methyltransferase [Plesiocystis pacifica SIR-1]
          Length = 485

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 133/400 (33%), Gaps = 69/400 (17%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
              L+I     Q A K+ R+R  +    +P         + YR  ++  +      L   
Sbjct: 113 GCPLMIAAVPAQRAAKLARMRSEL---GLPVEAFEGGAELGYRWSSKRSVAGRSGALVFG 169

Query: 62  -----------------------MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEP 98
                                  M          +  F    LL NAL IE     R + 
Sbjct: 170 SPVGGPSARRKPKKPSKGLWLADMRGCLVDHPRIVAAFEATRLLANALAIE---AWRDDD 226

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD--ALHARKYQIQ----LI 152
              +   +  +  +  ++ ++TL+       A RE    L +  A+    + +Q      
Sbjct: 227 EGGSGDLRHLWAKTDGERVLLTLVTGTDDSRAARELGPALLEQGAVAGVAWSVQGERSNA 286

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
            R +  +     D     L      +  R     F QPN  +       ++         
Sbjct: 287 LRGSSAQTLGGLD----ELAFEVLGVPLRVGALGFLQPNPEVAAKAYVELVRGETNQPDQ 342

Query: 213 -----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                 L+LY G G  + +L R F  V   E    S        AA  V        +++
Sbjct: 343 PDQSLALDLYAGAGVTTGLLRRRFAEVRPCESHPES-------AAALGVP-----AQTAE 390

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNP 325
           +F   +    E NR             +  +PPR+GL +A    + +   P +  +SCNP
Sbjct: 391 QF---LATRLEGNRPP--------PALVIANPPRAGLGEAVCAQLLSLDAPRLHIMSCNP 439

Query: 326 DSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           D+L  DL  L+  + ++ L  +D  P T H+E    L R+
Sbjct: 440 DTLAADLDRLAPGYVLDTLRAYDTLPQTPHVELVARLRRR 479


>gi|114762227|ref|ZP_01441695.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Pelagibaca bermudensis
           HTCC2601]
 gi|114545251|gb|EAU48254.1| 23S rRNA (Uracil-5-)-methyltransferase rumA [Roseovarius sp.
           HTCC2601]
          Length = 407

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 128/352 (36%), Gaps = 32/352 (9%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
             KVD +R  + A  +      I  S P   R RA F               + +   + 
Sbjct: 79  DWKVDVVRHALSAHALEAPFRPIATSSPQS-RRRAAFSARRTKKGALAGFHMKGSDVIVS 137

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           +   +     + A +  + A   L    + +L     +T+  D   V +   + LD   +
Sbjct: 138 VPDCLLVDPKLAAALPLVEALAVLGSSRKGEL--SVLVTASLDGLDVAVSGGKPLDAQLQ 195

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
                L     AR++ +  +   ++  + L R    +R+  A           +F Q   
Sbjct: 196 SDLANL-----AREHDVARVAWGDE--VALTRRPPVQRMGRAEVV----PPPGAFLQATP 244

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +L  V  A +G +  +++L+ G G F+L LA    RV AVE  K    A      
Sbjct: 245 EGEAALLAAVREAVRGARH-VVDLFAGCGTFALPLAEE-MRVHAVEGDKGMTAALDKGWR 302

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                        ++         R+  R   +     RF    +DPPR+G +     + 
Sbjct: 303 M------------AEGLKHVTHEARDLFRNPLLPEDLERFDAAVIDPPRAGAEAQVAELA 350

Query: 313 QA-YPHILYISCNPDSL-CRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
           +A  P I ++SCNP +      ++ +  + I+ L + DQF ++ H+E     
Sbjct: 351 RAGIPRIAFVSCNPVTFARDAAALDAAGYVIDWLQVVDQFRWSTHVELVAAF 402


>gi|118473429|ref|YP_887104.1| RNA methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118174716|gb|ABK75612.1| putative RNA methyltransferase [Mycobacterium smegmatis str. MC2
           155]
          Length = 397

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 28/219 (12%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG- 211
           GR + T++   +    +R+     + ++R    +F Q +        + V    +   G 
Sbjct: 200 GRKSPTRVVDGQYEAVQRIG----SRVWRVPVTAFWQAHREAAALYSDLVAGWAQLEPGM 255

Query: 212 DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +LY G G F+  LA        V+ V+ ++ S  +AR   A   + +V ++  S + 
Sbjct: 256 TAWDLYGGAGVFAASLAEQVGESGHVVTVDTSRGSSRSAR--AALADLKSVSVITDSVRR 313

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPD 326
                                 R     +DPPR+G +   +  + A   P I++I C   
Sbjct: 314 ALAT---------------QHQRADVAVLDPPRTGANREVIDQIAAADVPRIIHIGCEAA 358

Query: 327 SLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           S  RD+ + L   + +E + +FD FP T H+EC  +L R
Sbjct: 359 SFARDVGLYLRHGYHVEEIRVFDSFPLTHHIECVAVLNR 397


>gi|330994042|ref|ZP_08317972.1| Putative RNA methyltransferase [Gluconacetobacter sp. SXCC-1]
 gi|329758988|gb|EGG75502.1| Putative RNA methyltransferase [Gluconacetobacter sp. SXCC-1]
          Length = 411

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 132/371 (35%), Gaps = 40/371 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM--LAFQ-VPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
              L        +  K  R+ + +    F  VP  Q  +  P H R R +      G ++
Sbjct: 64  GCRLQHMALPAIMDWKAGRVVEALRHAGFDSVPAPQTRQVSP-HGRRRVDLAFRRAGREI 122

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQA 117
              +  ++  + + +         + AL+  +   +   P + A    QI+ L S  D  
Sbjct: 123 VLGLHRRRG-DVVDMTACTLLDPTLLALLPPLRTMLHSLPAVHAGGDVQINLLDSGPDLL 181

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           I        +D        R+           ++  RA   +       +   +      
Sbjct: 182 I-------AMDGTPDTNDRRILAEFSRAHGIARISLRARPPETL----ALTGPVFHHFDG 230

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
                   +F QP       + + VLA    KG++  ++ELY G G  S  LA     V 
Sbjct: 231 TRVVPPPGAFLQPAREGEEAIRQAVLAGLPRKGLKAGIIELYAGCGTLSFALATQAK-VH 289

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           A E  +P+                    +  +   T+ +   R+ NR   +     +   
Sbjct: 290 AYEGDRPA-----------------FACLKQASGGTRVLPALRDLNRQPVMATELAKSAA 332

Query: 295 IFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPY 352
           + +DPP +G       +V   P  ++Y+SCNP +L RDL+ L    + ++ L + DQF +
Sbjct: 333 VVLDPPHAGAGAQVAQIVTGRPRCVIYVSCNPAALQRDLTPLRQAGYRLDSLTVIDQFLW 392

Query: 353 TRHMECGVLLV 363
           +  +E   +L 
Sbjct: 393 SAEVEAVCVLT 403


>gi|319441605|ref|ZP_07990761.1| putative SAM-dependent methyltransferase [Corynebacterium variabile
           DSM 44702]
          Length = 446

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 117/376 (31%), Gaps = 55/376 (14%)

Query: 11  EQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEP---IHYRMRAEFHIWHDGDDLYHIMFD 64
           E  L  K   +           + ++ +  + P     YR R    +  +G      +  
Sbjct: 101 EGSLEWKRQVVVDQFARIGHLDLTDVTVSATSPAPFTGYRTRVRLGVDAEG---RAGLRS 157

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             +   + +   +            ++  +  E      L              V     
Sbjct: 158 SGSHGIIPVAEAVCA-----QWTPALVDGLAEE------LVSFTLTPGAEVCVAVGTDGA 206

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R + +  +E   R          +     R    +  L  D     +T A   + +    
Sbjct: 207 RSVVELVKESTARKTTRGRRDHRRRNGAVRRRTRRTVLSGD---GTVTHAVNGVTWTVPV 263

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-----------DLLELYCGNGNFSLVL--ARHF 231
            +F Q +        +W+ +   G  G              +LY G+G FS  L  A   
Sbjct: 264 EAFWQAHVASPELYSDWITSTLAGDAGVADAVPGDGSPAAWDLYGGSGVFSAALTAALPG 323

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V  V++A  +  A    +A     +V+ V          +R  R              
Sbjct: 324 AQVDCVDVASEATAAGEQALADR---DVRFVAGDVASHIAELRGGR-------------G 367

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
              + +DPPR+G  D  +  V A+   H+L+I C+P +  RD + L S  +    L   D
Sbjct: 368 LAAVVLDPPRTGAGDRVLEEVAAHRPAHVLHIGCDPATAARDAATLASAGYRPVSLTAVD 427

Query: 349 QFPYTRHMECGVLLVR 364
            F  T H+E     VR
Sbjct: 428 AFGLTHHVEVLSHYVR 443


>gi|148990104|ref|ZP_01821344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924498|gb|EDK75586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP6-BS73]
          Length = 120

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 14/131 (10%)

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           ++I   ++E A+ N      +N      +++E      +E             YR   + 
Sbjct: 1   MDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYKE------------GYRADALI 48

Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
           VDPPR+GLDD  +  +  Y    ++YISCN  +L RDL  L   + +  +   D FP+T 
Sbjct: 49  VDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEVYDLHYIQSVDMFPHTA 108

Query: 355 HMECGVLLVRK 365
             E  V L++K
Sbjct: 109 RTEAVVKLIKK 119


>gi|312196121|ref|YP_004016182.1| deoxyribonuclease/rho motif-related TRAM [Frankia sp. EuI1c]
 gi|311227457|gb|ADP80312.1| deoxyribonuclease/rho motif-related TRAM [Frankia sp. EuI1c]
          Length = 494

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 29/228 (12%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
           D  D+ L    R   ++    +F Q +      +++ VLAA +   G+  L+LY G G F
Sbjct: 264 DGADQDLVERVRGREFQVDAGAFWQVHPAAAGTLVDAVLAALEPQPGERALDLYSGAGLF 323

Query: 224 SLVLARHF---DRVLAVEIAKP---------------SVEAARYNIA-------ANHVNN 258
           +  LA       +V+A+E                   SV   R                 
Sbjct: 324 AAFLAERVGPDGQVIALESDSAAVASAARSMADLPWVSVRPVRVTAKTVQGAVGLAGRTG 383

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH 317
              +   +     A R                      +DPPR+G     +  ++   P 
Sbjct: 384 PGGLAGKTGPGGLAGRTGPGGLAGGAGADGGRAIDVAVLDPPRAGAGVDVLTALLGLRPR 443

Query: 318 -ILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLV 363
            + Y++C+P +L RDL++ +S  + +  +  FD FP T H+EC   LV
Sbjct: 444 AVAYVACDPVALGRDLAVAVSCGYRVSDVRAFDLFPMTAHIECVARLV 491


>gi|25028353|ref|NP_738407.1| hypothetical protein CE1797 [Corynebacterium efficiens YS-314]
 gi|259507408|ref|ZP_05750308.1| SAM-dependent methyltransferase [Corynebacterium efficiens YS-314]
 gi|50401588|sp|Q8FPI1|Y1797_COREF RecName: Full=Uncharacterized RNA methyltransferase CE1797
 gi|23493638|dbj|BAC18607.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259165033|gb|EEW49587.1| SAM-dependent methyltransferase [Corynebacterium efficiens YS-314]
          Length = 421

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 126/374 (33%), Gaps = 72/374 (19%)

Query: 11  EQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYHIMFDQ 65
           E +L  K   L   +        +P  ++F  EP   +R R    +              
Sbjct: 103 EAELEIKSRVLTDQLQRIGGLADIPTPELFELEPSQGWRTRVRLGV---DASGRAGFRKL 159

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++ + +              ++ E++  +   P  R      + + +  D+ + T++  R
Sbjct: 160 RSNDLVTDVACS-------QVVPELIDGLVG-PGARTFTPDSEVIAAIDDRGVRTVVEVR 211

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
                      R    LH                +      V++ +     T       +
Sbjct: 212 K-----APRGRRAETILH----------------VLEGDGSVEQTVGDHTWTF----PVS 246

Query: 186 SFTQPNAGINV-------HMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARH-FDRVLA 236
            F Q +             +L+         +G +  +LY G G F  V+ R     V +
Sbjct: 247 GFWQAHTKAPGAYSAFIGEVLDGAELVDVDKRGPVAWDLYGGVGLFVPVINRALGAHVHS 306

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE+++ S EA     A   +  V       +  T  +                 +   + 
Sbjct: 307 VELSEGSAEAGDD--ALAGLP-VTFHAGRVESVTSQLP----------------KPHVVV 347

Query: 297 VDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYT 353
           +DPPR+G     V  +       +++I C+P +  RD++  S   +T++RLA+F+ FP T
Sbjct: 348 LDPPRTGAGSDVVATIAGAKPQLVVHIGCDPATFARDVADWSAGGYTLDRLAVFNAFPAT 407

Query: 354 RHMECGVLLVRKPS 367
            H E   +  RK +
Sbjct: 408 HHYETIGVFTRKSA 421


>gi|296116544|ref|ZP_06835154.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976756|gb|EFG83524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 425

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 129/359 (35%), Gaps = 34/359 (9%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQIFRS---EPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           L  K D + + +      +     S    P+  R R +         +   +  ++  E 
Sbjct: 86  LRWKTDTVLRALHGAGYTDPIPVTSWQGAPLT-RRRVDLAFARTEQGMVIGLHRKRG-EV 143

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAK-LFQIDYLTSQSDQAIVTLIYHRLLDD 129
           + +         + AL+  +   +   P +R     QI+ L S  D  + T       D 
Sbjct: 144 VDMTQCHVLEPALFALLPLLRPMLHSLPAIRRGGDLQINMLDSGPDLLLAT-------DG 196

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
                  R+     A +   ++  R   +    +       +      +       +F Q
Sbjct: 197 PLGPDDRRILAQFAASQRIPRISWRPQGSHDIPETAAQTGGVWHEFSGVRTAPPPGAFLQ 256

Query: 190 PNAGINVHMLEWVLAA--TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           P+      +   +L A  TK ++GD++ELY G G  S  LA    RV+A E    +    
Sbjct: 257 PSRAGEDAIRCAILEALPTKRLKGDIIELYAGCGTLSFALAER-GRVMAHEGDAAA---- 311

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                      +K         T+     R+ NR   +     +   + +DPP +G    
Sbjct: 312 --------FACLKQACGG----TRVQPFHRDLNRQPVMGAVLAKAGAVVLDPPHAGAGAQ 359

Query: 308 TVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
              +    P +++Y+SCNP +L RD + L    + ++RL + DQF ++  +E   L  R
Sbjct: 360 LHQITDGKPLNVIYVSCNPTALRRDATALRQAGYRLDRLTVIDQFLWSTEVESVCLFTR 418


>gi|254776021|ref|ZP_05217537.1| RNA methyltransferase [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 395

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 119/332 (35%), Gaps = 64/332 (19%)

Query: 40  PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
           P  +R R    +  D    +H    ++    +R     PG                    
Sbjct: 121 PTGWRTRVRLDVGADRRPGFHRYHSEELVTDLRCAQLPPG-------------------- 160

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +   + +  + ++      V        DD  R     LR             GR   TK
Sbjct: 161 MLDGIAETQWPSAAQLHVAV-------DDDGARHVVRTLRQ------------GRRTATK 201

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYC 218
           +   R    +R++       +R    +F Q +          VL   +   G    +LY 
Sbjct: 202 VIEGRYEAVQRVS----GRRWRVPVTAFWQAHRDAAATYRALVLDWAQPGAGMTAWDLYG 257

Query: 219 GNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G G F+  L        RVL+V+ ++ S  AAR  +A   +  V++V  S +    A R 
Sbjct: 258 GAGVFAAALGEAVGASGRVLSVDTSRASTRAARAALA--DLPQVQVVTDSVRRALAAQRT 315

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS 333
                        + +     +DPPR+G     +  + A   P I++I C   S  RD+ 
Sbjct: 316 P------------ALKADVAVLDPPRAGAGREVIDSLSAAGVPRIVHIGCEAASFARDMG 363

Query: 334 I-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           I L   +T+E++ +FD FP T H EC  LL R
Sbjct: 364 IYLGHGYTVEKIRVFDAFPLTHHSECVALLTR 395


>gi|114706810|ref|ZP_01439710.1| putative rna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537758|gb|EAU40882.1| putative rna methyltransferase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 412

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 112/329 (34%), Gaps = 41/329 (12%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAK 103
           R R        G        +  +   + I         I   +  +     +    +A 
Sbjct: 115 RRRVTLTAVRAGPKALLGFHEAHSDRVVPIGPCPVAMPGIVDALPALEKLATILIDRKAP 174

Query: 104 LFQIDYLT------SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
           L      T      + SD A ++   HR      +  +  L           +++ +A  
Sbjct: 175 LKLTVTQTDAGLDIAASDAAKLSEERHR------QAVSHALASKFARLSSNGEILMKARL 228

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
            ++      V+                  F Q  A     M E VL         + +L+
Sbjct: 229 PQVFFGGIAVE-------------PPPGGFLQAVAAAEDAMAERVLK-HLAKAKRVADLF 274

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G+G F+L LA+    V AVE    ++ A     AA   + +K +    ++     RR  
Sbjct: 275 AGSGAFTLRLAKGAK-VHAVESEAGALAALDA--AARQASGLKPITHERRDLY---RRPL 328

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL- 335
               LK        +  +  DPPR+G +     +  +    I  +SCNP +L RDL IL 
Sbjct: 329 TVKDLKP-------YDGVVFDPPRAGAEGVAQALAASTVKRIAAVSCNPQTLGRDLRILI 381

Query: 336 STTHTIERLALFDQFPYTRHMECGVLLVR 364
                ++ +   DQF ++ H+E   LL R
Sbjct: 382 DGGFQLKSVTPIDQFLWSHHVEAVALLER 410


>gi|167823860|ref|ZP_02455331.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 9]
          Length = 342

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 99/280 (35%), Gaps = 17/280 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWH--DG 55
             ++       Q+A K   L   +        +            YR RA   + H    
Sbjct: 70  GCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKK 129

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
             +     ++++     +         ++A+++ +   +     +R ++ QI+       
Sbjct: 130 GGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQL-SIRDRMPQIELAVGARV 188

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD--RDYVDERLTV 173
            A+V     R+L+         LR+     + Q  L  +   T          +D  L  
Sbjct: 189 TALVL----RVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPE 244

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD 232
            G  + ++     FTQ N  IN  ++   L      +GD +L+L+CG GNF+L LAR   
Sbjct: 245 FGIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAR 302

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQ 271
            V+ +E +      A  N   N V+ +      +  E T 
Sbjct: 303 EVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTA 342


>gi|86740031|ref|YP_480431.1| deoxyribonuclease/Rho related TRAM [Frankia sp. CcI3]
 gi|86566893|gb|ABD10702.1| 23S rRNA m(5)U-1939 methyltransferase [Frankia sp. CcI3]
          Length = 488

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/342 (19%), Positives = 124/342 (36%), Gaps = 49/342 (14%)

Query: 36  FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR 95
              + + +R R  F +   G+     +   ++ E +          L+ A +       R
Sbjct: 185 GADDGLAWRTRMRFAVTAGGE---VGLRASRSHEVVATPDCRIAHPLVLAAL-----AGR 236

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
             P   A        T Q   A+       +++D          +     +   ++    
Sbjct: 237 RFPGADAVEVAASPATGQVAVAVHPAGAGTVVND----------EHAGTGEDPGEVGAPG 286

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LL 214
              ++   R               +R     F Q +      +++ V  A +   G+  L
Sbjct: 287 EVVEVVGGR--------------RFRLGPEVFWQVHPAAPGVLVDAVREALRPRAGETAL 332

Query: 215 ELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LY G G F+  LA       RV+A+E    SV AA       ++ ++  V + +   T 
Sbjct: 333 DLYAGTGLFAAFLAEDVGAAGRVIALESDAASVAAAAN-----NLADLPWVSLRALRVTP 387

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLC 329
           A  R             + R     +DPPR+G   A V  + A+    + Y++C+P +L 
Sbjct: 388 ATVRGVV-----GTGGPAGRVDLAVLDPPRTGAGPAVVAALLAHRPRAVAYVACDPVALG 442

Query: 330 RDLSILST-THTIERLALFDQFPYTRHMECGVLLVRKPSGWH 370
           RDL+  +   + +  L  FD FP T H+EC  LL  + +  +
Sbjct: 443 RDLAAAAAAGYDLVVLRAFDLFPMTAHVECVALLEPRGADRN 484


>gi|238063510|ref|ZP_04608219.1| deoxyribonuclease/rho domain-containing protein [Micromonospora sp.
           ATCC 39149]
 gi|237885321|gb|EEP74149.1| deoxyribonuclease/rho domain-containing protein [Micromonospora sp.
           ATCC 39149]
          Length = 222

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 25/235 (10%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
           +A+ +    + +   A+     +D       +        +    + F Q +      ++
Sbjct: 2   EAVASTGGDVTVTALADGAVTRVDGPATVREVAAGRE---WTLPASGFWQVHPAAADTLV 58

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANH 255
           + VL       G+   +LY G G F+  +A       R+  VE A   V AAR N+    
Sbjct: 59  DAVLDLLDPRPGESAWDLYGGAGLFAAAVASRVGPAARITLVESAAQGVAAARENLR--D 116

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQA 314
           +  V++V    +    A+ R R                 + +DPPR+G     V  ++ A
Sbjct: 117 LPRVEVVAARVE---TALARRRVTG----------PVDLVVLDPPRTGAGARVVRDVIAA 163

Query: 315 YPH-ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
            P  + Y++C+P +  RD+   +     +  L  FD FP T+H+E   LL  + +
Sbjct: 164 GPRAVAYVACDPAAFARDVRTFADAGWELAALRGFDLFPMTQHVELVGLLRPRAA 218


>gi|255262179|ref|ZP_05341521.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255104514|gb|EET47188.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 404

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 135/370 (36%), Gaps = 37/370 (10%)

Query: 2   SGTLLIDQYEQQLA-EKVDRLRQMML--AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
            G L+    EQ +A  K + +R  +     +   L I  S P                  
Sbjct: 65  GGCLMQHASEQSVADWKTEIVRLGLASQGIETNILPILTSPPQT--------------RR 110

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
                 ++TK+   I + M GS  + A+    + T  L  +++          S+  +  
Sbjct: 111 RAKFAARRTKKGAMIGFHMRGSDGLVAVPDCQLVTPSLRSMIQMLEEFTVEFGSRKGELA 170

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +T+       D   E    L DA+  R       GR +  ++  + + +  R   A +  
Sbjct: 171 LTVTDSLGGLDVMVENGKELVDAM--RVTLAAAAGRYDFARLTWNDETIVTRRAPAHQFG 228

Query: 179 IYRQ--IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
             +      +F Q      + +   V  A  G    +++L+ G G F++ +A    +V A
Sbjct: 229 KAQVAPPPGAFLQATKEGELALTSAVQNA-LGDASIVVDLFAGAGTFTIPMAETA-QVHA 286

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     +E    +        +K V   +++  +      EF          ++   + 
Sbjct: 287 VEGVADMLE--TLDAGWRMATGLKRVTTEARDLFRRPLLPDEF----------HKKDGVV 334

Query: 297 VDPPRSGLDDATVGMV-QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTR 354
           +DPPR+G +  T  +   A P +  +SCNP +  RD  IL      ++ +   DQF ++ 
Sbjct: 335 IDPPRAGAEAQTHEIANSAVPLVASVSCNPVTFARDARILVDAGFALDWVQPVDQFRWSN 394

Query: 355 HMECGVLLVR 364
           H E      R
Sbjct: 395 HTEIAARFSR 404


>gi|258653885|ref|YP_003203041.1| deoxyribonuclease/rho motif-related TRAM [Nakamurella multipartita
           DSM 44233]
 gi|258557110|gb|ACV80052.1| deoxyribonuclease/rho motif-related TRAM [Nakamurella multipartita
           DSM 44233]
          Length = 433

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 110/369 (29%), Gaps = 58/369 (15%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           ++Q   K + + + +         +         + +R R     W             +
Sbjct: 102 DRQRELKAEVVAEQLQRLAGIERTVVVEPLPGGDVGWRSRVR---WALDAQGRVGPRATR 158

Query: 67  TKERMRIDY---FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           +   + I+     +     I A    +     + P            T    +   +   
Sbjct: 159 SHRVVPINALRPCLIADPAITAATDTLDVPPGVHPA---------PPTGPRRRRRDSGRP 209

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
            R    A  E               +        T     R      +T       +   
Sbjct: 210 PRRTPVALPE-------------VVLAQAADGAVTATWPGRPGAAPIVTEHAAGRDFAVA 256

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQ---GDLLELYCGNGNFSLVLARHFD---RVLAV 237
            + F QP+      +   V AA  G++       +LY G G F+ VLA        V+ V
Sbjct: 257 ADGFWQPHHAAADVLAAAVAAALAGVELAGRTGWDLYGGVGLFAQVLAEAIGPEGTVIGV 316

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           E  + + + A  N+A              +     +                     I +
Sbjct: 317 ESDERAADLAVANLA--DHPGFTGRCGEVEAVLPTL---------------DPAVAAIVL 359

Query: 298 DPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTR 354
           DPPRSG        +       I+Y++C+P +L RD + L+   + ++ L  FD FP T 
Sbjct: 360 DPPRSGAGPRVCASLAGLGPDVIVYVACDPAALARDTAALAAGGYGLDSLRAFDTFPQTH 419

Query: 355 HMECGVLLV 363
           H+EC    V
Sbjct: 420 HVECVARFV 428


>gi|329889453|ref|ZP_08267796.1| 23S rRNA uracil-5--methyltransferase rumA [Brevundimonas diminuta
           ATCC 11568]
 gi|328844754|gb|EGF94318.1| 23S rRNA uracil-5--methyltransferase rumA [Brevundimonas diminuta
           ATCC 11568]
          Length = 414

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 128/369 (34%), Gaps = 43/369 (11%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMF-D 64
            + Y   LA K + + Q +    +   ++   + P+  R R   H     D    + F  
Sbjct: 78  DEPY---LAWKREVVIQTLAREGLETEVEATVATPLASRRRLALHAREGADGRVMLGFKA 134

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI---VTL 121
           +++   + +         + A +  +       P L           + +D  +   VT 
Sbjct: 135 RKSWRVVELTDCPLSDPHLTAALPAL--AKVAAPFLGHPKSAPTLHVTLTDTGLDVDVTG 192

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIG----RANKTKICLDRDYVDERLTVAGRT 177
           +  R       + A+ +  A  A   ++ L G     A + ++   R  V          
Sbjct: 193 VEKRSGGLNGDQLALAIAAAAEADLARLSLDGDTLVMARQPRVRFGRASVP--------- 243

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
                    F Q +      M+E  + A +G +  + +L+CG G F+  LA         
Sbjct: 244 ----LAAGGFLQASPAAEAAMVERAVEAVRGAK-KVADLFCGAGTFTFPLAEIAS----- 293

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
            +      AA        ++  + ++    +     RR      LK           I +
Sbjct: 294 -VTAADSAAASIAALKAGLSTAQGLKGIEAQARDLFRRPLSPYDLK-------GCDAIVL 345

Query: 298 DPPRSGLDDATVGMVQAYPHILY-ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRH 355
           DPPR+G  + T  +      ++  +SCNP +  RD  +L      +E++   DQF ++ H
Sbjct: 346 DPPRAGALEQTQQLPGTKASVVVGVSCNPQTFARDARVLVDAGFRLEKVTPIDQFIWSTH 405

Query: 356 MECGVLLVR 364
           +E   +  R
Sbjct: 406 IELVGVFRR 414


>gi|118465758|ref|YP_882757.1| RNA methyltransferase [Mycobacterium avium 104]
 gi|118167045|gb|ABK67942.1| putative RNA methyltransferase [Mycobacterium avium 104]
          Length = 395

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 119/332 (35%), Gaps = 64/332 (19%)

Query: 40  PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
           P  +R R    +  D    +H    ++    +R     PG                    
Sbjct: 121 PTGWRTRVRLDVGADRRPGFHRYHSEELVTDLRCAQLPPG-------------------- 160

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +   + +  + ++      V        DD  R     LR             GR   TK
Sbjct: 161 MLDGIAETQWPSAAQLHVAV-------DDDGARHVVRTLRQ------------GRRTATK 201

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYC 218
           +   R    +R++       +R    +F Q +          VL   +   G    +LY 
Sbjct: 202 VIEGRYEAVQRVS----GRRWRVPVTAFWQAHRDAAATYRALVLDWAQPGAGMTAWDLYG 257

Query: 219 GNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G G F+  L        RVL+V+ ++ S  AAR  +A   +  V++V  S +    A R 
Sbjct: 258 GAGVFAAALGEAVGESGRVLSVDTSRASTRAARAALA--DLPQVQVVTDSVRRALAAQRT 315

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS 333
                        + +     +DPPR+G     +  + A   P I++I C   S  RD+ 
Sbjct: 316 P------------ALQADVAVLDPPRAGAGREVIDSLSAAGVPRIVHIGCEAASFARDMG 363

Query: 334 I-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           I L   +T+E++ +FD FP T H EC  LL R
Sbjct: 364 IYLGHGYTVEKIRVFDAFPLTHHSECVALLTR 395


>gi|315282665|ref|ZP_07871022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
           S4-120]
 gi|313613689|gb|EFR87476.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
           S4-120]
          Length = 101

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + NV      +++      +E             +R   + VDPPRSG D   +  +   
Sbjct: 1   IENVYYEVGKAEDVLPKWVKE------------GFRPDAVIVDPPRSGCDQGLIKSLLEV 48

Query: 316 --PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
               ++Y+SCNP +L RDL++L+  + I  +   D FP T H+E  VLL  K 
Sbjct: 49  EAKQLVYVSCNPSTLARDLALLAKKYRIRYMQPVDMFPQTAHVETVVLLQLKN 101


>gi|297518334|ref|ZP_06936720.1| tRNA (uracil-5-)-methyltransferase [Escherichia coli OP50]
          Length = 86

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/86 (72%), Positives = 71/86 (82%)

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339
           NRL+ ID+ SY+ +TIFVDPPRSGLD  T  MVQAYP ILYISCNP++LC++L  LS TH
Sbjct: 1   NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTH 60

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +ERLALFDQFPYT HMECGVLL  K
Sbjct: 61  KVERLALFDQFPYTHHMECGVLLTAK 86


>gi|172040588|ref|YP_001800302.1| putative SAM-dependent methyltransferase [Corynebacterium
           urealyticum DSM 7109]
 gi|171851892|emb|CAQ04868.1| putative SAM-dependent methyltransferase [Corynebacterium
           urealyticum DSM 7109]
          Length = 416

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 119/370 (32%), Gaps = 68/370 (18%)

Query: 11  EQQLAEKVDRLRQMML---AFQVP----NLQIFRSEPI---HYRMRAEFHIWHDGDDLYH 60
           E  L  K   +         F++P    +  +  +      HYR R    +  +G     
Sbjct: 94  EGSLDFKQAVVIDQFRRLGKFELPQAFLDAHVRAASLWPFTHYRHRVRLGVDAEGQ---T 150

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
            +   ++ + + +D       L               P L   +  ++          V 
Sbjct: 151 GLRKPKSNDIVPVDEVDCAQWL---------------PGLADGVASLNPSPGSEVVVGVG 195

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
               R + +  +    R R  L                         +  +T +   + +
Sbjct: 196 RDGKRSVVELKKTRRGRKRRVLD-----------------------GEGEVTHSHFGVTW 232

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +   ++F Q +   + +   WV     G    + +LY G G  S  L      +  V++A
Sbjct: 233 KVPVDAFWQSHISASAYYARWVADRLNGDLHTVWDLYGGCGALSAGLLGSARNIEIVDVA 292

Query: 241 KPSVEAARYNIAANHVNNVK----IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
             +  A R   AA+  +  +     VR  S +    + +  E   L            + 
Sbjct: 293 SSATHAGRDAFAADRESRAEGAGTAVRFRSSDVGAWLEKLDEVADL----------DAVV 342

Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYT 353
           +DPPR+G     +  V  +  P +++I C+P +  RD  +     + +  + + D F  T
Sbjct: 343 LDPPRTGAGADVIQNVAQHRPPRVIHIGCDPATAARDAGMWRDAGYELREMEIVDAFGLT 402

Query: 354 RHMECGVLLV 363
            H+E  +   
Sbjct: 403 HHVETLMYFE 412


>gi|227503489|ref|ZP_03933538.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC
           49725]
 gi|227075992|gb|EEI13955.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC
           49725]
          Length = 418

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 132/366 (36%), Gaps = 70/366 (19%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFR------SEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
            +L  K+D LR+ +    +  L+              +R R    +   G      +   
Sbjct: 96  AELDIKMDVLREQLRRSGIEGLESLTIEQHDLPPVRGWRSRVRLGVDKQG---RAGLRKY 152

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++ E +        S+    L   ++  +  +   R         T  ++   V      
Sbjct: 153 RSNELVT-------SVGCTQLADGLIDGLVGDGARR--------FTPGAEIVAV------ 191

Query: 126 LLDDAWRECAIRLRDALHARKY-QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
            LD A     +  R A   R+   I+ +   + T +    +YV+ R         +    
Sbjct: 192 -LDGAGNRHVVETRKAPRGRRVETIREVIEGSGTVV----EYVNGR--------EFSFPA 238

Query: 185 NSFTQPN---AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIA 240
            +F Q +     +   +    LA     Q    +LY G G F+  L+     +V++V+ +
Sbjct: 239 TAFWQAHVAAPELYSAVAGQWLAGRNYQQKIAWDLYGGVGLFAPALSEATGGKVISVDYS 298

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +  + +       + ++ I   S+              +++ +     +   + +DPP
Sbjct: 299 PAATASTQP-----GLRDIDIAVKSA--------------KVEQVAAQLPQPGAVVLDPP 339

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           R+G  +  +  V       ++++ C+P +  RDLS+  S  +  E++AL + FP T H E
Sbjct: 340 RTGAGEQVIRAVAEAKPQAVVHVGCDPATFARDLSLWHSAGYKPEKMALINAFPGTHHFE 399

Query: 358 CGVLLV 363
              L+ 
Sbjct: 400 VIALIT 405


>gi|317506803|ref|ZP_07964577.1| TRAM domain-containing protein [Segniliparus rugosus ATCC BAA-974]
 gi|316254877|gb|EFV14173.1| TRAM domain-containing protein [Segniliparus rugosus ATCC BAA-974]
          Length = 393

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/237 (23%), Positives = 94/237 (39%), Gaps = 32/237 (13%)

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           L      +   +QL  R    +      +  +R+      L  R    +F QP+      
Sbjct: 179 LVAVDDEQTRHVQLADRKRGRRNLAGSGHAVQRVGDRAWRLPVR----AFWQPHREAARR 234

Query: 198 MLEWVLAATKGIQGD------LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAAR 248
               V   T  +           +LY G G F+ VLA+      RV  V+ A  S  AA 
Sbjct: 235 YAALVAQWTGDLPEADRSGSVAWDLYGGAGLFASVLAQAVGPTGRVFTVDSAGASSRAAV 294

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            ++A   + +V+++  S+++    + R                 +   VDPPRSG   A 
Sbjct: 295 ESLA--DLRHVEVLSGSTEKILPDLPRA----------------QVAVVDPPRSGAGRAV 336

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           V  +     I+++ C   +  RD+ + +   +T+  + +FD FP T H+EC  LL R
Sbjct: 337 VAALAGTDRIIHVGCETAAFSRDVGLYVEHGYTVREIRVFDAFPLTHHVECFALLER 393


>gi|85717530|ref|ZP_01048475.1| possible hypothetical RNA methyltransferase [Nitrobacter sp.
           Nb-311A]
 gi|85695647|gb|EAQ33560.1| possible hypothetical RNA methyltransferase [Nitrobacter sp.
           Nb-311A]
          Length = 435

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/325 (22%), Positives = 124/325 (38%), Gaps = 31/325 (9%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA-TIRLEPLLRA 102
           R R   H   DG  L        +   M ID        ++  +       + L+P  + 
Sbjct: 138 RRRITLHARSDGGRLRVGFAAPNSHAIMPIDACPVLDPALHGAIDAARELAVALKPANKP 197

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
              Q+   T+  +   V +     L  A      R+ +A    +            ++ L
Sbjct: 198 LDIQV---TATCNGLDVDVRGSGQLPAALIATLSRVAEAHRLARLT-------RHGELVL 247

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            R      +  A   L       SF Q         L  ++AA  G    + +L+CG G 
Sbjct: 248 MRASPAIEIGAARLVL----PPGSFLQA-TVAGEEALAALVAAHCGKARHIGDLFCGVGP 302

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F+L LA    RV A +    +V A +   AA+  + +K +R  +++     RR      L
Sbjct: 303 FALRLAVRA-RVAAFDSNAAAVAALQK--AADTASGLKPIRAETRDL---FRRPLVAQEL 356

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHT 340
           +DID        +  DPPR G +  +  +  +  P I+ +SC+  +  RD  +L    ++
Sbjct: 357 RDIDA-------VIFDPPRQGAEAQSKHLAASRIPVIVAVSCSAATFTRDARVLIDGGYS 409

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +E +   DQF ++ H+E     VR+
Sbjct: 410 LETVTPVDQFRHSPHVELVAKFVRR 434


>gi|330889401|gb|EGH22062.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 120

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 14/129 (10%)

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     VE A  N  +N ++NV+  +    +             L   D  +  F  + 
Sbjct: 1   VEGVATMVERAAVNAMSNDLHNVQFFQADLSQ------------PLTHADWAAEGFSAVL 48

Query: 297 VDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTR 354
           +DPPR G  +    + +     +LY+SCNP +L RD + ++S  + ++R  + D FP T 
Sbjct: 49  LDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQTA 108

Query: 355 HMECGVLLV 363
           H+E   L  
Sbjct: 109 HVEAMALFE 117


>gi|148990105|ref|ZP_01821345.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924499|gb|EDK75587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
           pneumoniae SP6-BS73]
          Length = 339

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 84/246 (34%), Gaps = 26/246 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              ++   Y++QL  K D L Q +  F     +       I   EP +YR + +F     
Sbjct: 81  GCQIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL----------LRAKL 104
            + +   ++ Q +   + +   +        +   +   +    +          +R  +
Sbjct: 141 KNQVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIM 200

Query: 105 FQIDYLTSQSDQAIVT---LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
            +    T Q    IVT   L   +L+ +  ++    +  A++    +   I    KT+I 
Sbjct: 201 VRRARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEI-YGEKTEII 259

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGN 220
             ++ + E +        +     +F Q N      +  E V A     +  L++ YCG 
Sbjct: 260 WGQESIQEGVL----NYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKENHLIDAYCGV 315

Query: 221 GNFSLV 226
           G     
Sbjct: 316 GTIGFA 321


>gi|145295807|ref|YP_001138628.1| hypothetical protein cgR_1732 [Corynebacterium glutamicum R]
 gi|140845727|dbj|BAF54726.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 412

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 127/368 (34%), Gaps = 72/368 (19%)

Query: 14  LAEKVDRLRQMMLAFQ----VPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           L  K   LR  +        +P  ++   EP   +R R    +              ++ 
Sbjct: 98  LEIKSRVLRDQLERIGGIDELPEFELHDLEPTAGWRTRVRLGV---DASGRAGFRKLKSN 154

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E +              ++ E++  +  E   R          +   + I        +D
Sbjct: 155 ELVTEVACS-------QVVPELLEGLVGEGARRF---------TPGVEIIA------AID 192

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           DA +   +  R A   R+ +  L       K+      V++++        ++   +SF 
Sbjct: 193 DAGQRHVVESRKAPRGRRTETVL-------KVLEGTGEVEQKVG----DYTWKFPVSSFW 241

Query: 189 QPNAGINVHMLEWVLAATKGIQ--------GDLLELYCGNGNFSLVL-ARHFDRVLAVEI 239
           Q +        E++  A  G++            +LY G G F+ ++ ++    V +VE+
Sbjct: 242 QAHTKAPAAYSEFIAEALTGLELVDVDKRGPVAWDLYGGVGLFAPIITSKLQAAVHSVEL 301

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  S EA     A   +  V       +     +                     + +DP
Sbjct: 302 SPGSAEAGEE--ALAGLP-VTFHTGRVEGMASQLPS----------------PNVVVLDP 342

Query: 300 PRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHM 356
           PR+G     +  +       +++I C+P +  RD++      + +++LA+F+ FP T H 
Sbjct: 343 PRTGAGSDVLKSIAEAKPQLVIHIGCDPATFARDVADWKLNGYEMDQLAVFNAFPGTHHF 402

Query: 357 ECGVLLVR 364
           E   + VR
Sbjct: 403 ETIGVFVR 410


>gi|58038580|ref|YP_190544.1| tRNA (Uracil-5-) -methyltransferase [Gluconobacter oxydans 621H]
 gi|58000994|gb|AAW59888.1| tRNA (Uracil-5-) -methyltransferase [Gluconobacter oxydans 621H]
          Length = 441

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 133/373 (35%), Gaps = 39/373 (10%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM--LAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
              L        L  K  R+ Q +    F  +P  ++F++ P   R R +F +      +
Sbjct: 76  GCALQHLSLPALLDWKAQRVTQALTAAGFTDLPPARMFQTTPKT-RRRMDFAVQRVPGGV 134

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
              +  +   + + +         I            L   LR  L  +  LT +    +
Sbjct: 135 IIGLHRRNG-DPVDMTECHVLHPAI----------FGLLAPLREVLGSLGALTGRGSLMV 183

Query: 119 VTLIYHRLLD---DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             L     L     A    A RL+ A  AR++ +  I   +   + ++       +    
Sbjct: 184 NLLDSGPDLTLQTPAPLTSADRLKLAAFAREHDLSRISWQDPKDLGIETVAQSGPVREDF 243

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR 233
             +I     ++F Q  A     ++  V+     +      +EL+ G G  +  ++    R
Sbjct: 244 GGVIVSPPPSAFLQATADAEKAIVTAVVDGLPSLNKKDVTVELFAGCGTLTFPMSEK-GR 302

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+A E    +    +       V+                   R+  R   +       +
Sbjct: 303 VMAYEGNLGAANCLKAASGGRRVDGFH----------------RDLGRQPLLPHDLKSTR 346

Query: 294 TIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
            + +DPP +G    T+ + + A P I+Y+SCNP +L +D   L +   ++  L + DQF 
Sbjct: 347 AVVLDPPYAGAGAQTMPLAKSAVPDIVYVSCNPAALEKDGKALWNAGFSVIGLTIVDQFL 406

Query: 352 YTRHMECGVLLVR 364
           ++  +E  V+L R
Sbjct: 407 WSTEVEAVVVLSR 419


>gi|308801098|ref|XP_003075330.1| COG2265: SAM-dependent methyltransferases related to tRNA (ISS)
           [Ostreococcus tauri]
 gi|116061884|emb|CAL52602.1| COG2265: SAM-dependent methyltransferases related to tRNA (ISS)
           [Ostreococcus tauri]
          Length = 363

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 146/367 (39%), Gaps = 41/367 (11%)

Query: 33  LQIFRSEPIHYRMRAEFHIWHDG--DDLYHIMFDQQT---KERMRIDYFMPGSLLINALM 87
           ++        +R R  F I  D            ++    ++ + +D         +A  
Sbjct: 4   VEHAPPRTSAFRSRVAFGIIRDDLDGTPRLARISERGDAEEDELALDGVPGVRDGASAFA 63

Query: 88  IEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH---RLLDDAWRECAIRLRDALHA 144
             +         +R  +  ++ L+ +    IV    H    L +D WR  A  +R     
Sbjct: 64  EILRLDGGPWASVRESIRAVNVLSIRDGTEIVLASTHARETLDEDEWRTFAETVRAR--- 120

Query: 145 RKYQIQLIGRANKTK--ICLDRDYVDERLTV-AGRTLIYRQIENSFTQPNAGINVHMLEW 201
            +  + ++ +  K    +  DRDYV E++ +   RT+     E SF+ PN  +       
Sbjct: 121 DERVVGVVCKRKKMPNALVGDRDYVVEKMGLPNERTVRLIHREGSFSNPNGDVAEQTAIH 180

Query: 202 VLAATKGIQG-------DLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIA 252
           +      +           +ELY G GN ++ +A +F +    AVE+    VEAAR N A
Sbjct: 181 LCDYFDALTRSSEDEEYTFVELYAGCGNHTVCVAPYFAKRGAYAVEVDANLVEAARENFA 240

Query: 253 ANHV--NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            N +  N  ++V M ++E+ ++            +         + VDPPR+GLD  T+ 
Sbjct: 241 LNGLSENFARVVCMPAEEWVRSEDARAISGEAGRV--------ALLVDPPRAGLDARTLD 292

Query: 311 MV--QAYPHILYISCNPDSLCRDLS-----ILSTTHTIERLALFDQFPYTRH-MECGVLL 362
            V   A+  ++Y++C+  SL RD+        +  + +  LA+FD  P +   +E     
Sbjct: 293 FVTASAFDVVVYVACDHSSLRRDVDDPEHGFEARGYEMRTLAVFDHAPTSARWIEVVATF 352

Query: 363 VRKPSGW 369
            RK S  
Sbjct: 353 HRKSSAN 359


>gi|240169709|ref|ZP_04748368.1| SAM-dependent methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 396

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 75/192 (39%), Gaps = 24/192 (12%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RV 234
           I+R    +F Q +          V    +   G    +LY G G F+ VL        RV
Sbjct: 221 IWRVPVTAFWQAHRDAAAVYSGLVADWAQAAPGMTAWDLYGGAGVFAAVLGEAVGESGRV 280

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             V+ A+ +   A    A   +  V +V  S +   +                       
Sbjct: 281 WTVDSARAASRTAH--AALADLPQVAVVSESVRRMLEG---------------QPVGADV 323

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
             +DPPR+G     + ++ A   P +++I C   S  RD+ +  S  + +E++ +FD FP
Sbjct: 324 AVLDPPRTGAGRDVIKLLAAARVPRVVHIGCEAASFARDIGLYRSHDYVVEKIRVFDAFP 383

Query: 352 YTRHMECGVLLV 363
            T H+EC  LL 
Sbjct: 384 LTHHVECVALLT 395


>gi|261416610|ref|YP_003250293.1| deoxyribonuclease/rho motif-related TRAM [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373066|gb|ACX75811.1| deoxyribonuclease/rho motif-related TRAM [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 466

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 131/391 (33%), Gaps = 69/391 (17%)

Query: 2   SGTLLIDQYEQQLA--EKVDR--LRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--- 54
             +L     E+Q    EKV+R   +++  A    +  I       YR RA      +   
Sbjct: 117 GCSLQHLASEKQAEYLEKVERENFKRLAHAELPEDFVIHTGNAWGYRNRARVVFRGNSGY 176

Query: 55  --GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                       +++   +  +     +  +N  +    AT+  +         +D    
Sbjct: 177 GAAKRAAFGFRGEESNNIVPFEKCPVLTDGLNEFLRGPAATLLADNCHSGGRRDVDVNIF 236

Query: 113 QSDQAIVTLI---YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
            +    ++      H+   DA     + +          +                    
Sbjct: 237 DNGAGEISFYYPGMHKSDFDAHAISHVEIAGRKIEADASV-------------------- 276

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-------LAATKGIQGDLLELYCGNGN 222
                            F Q N G+   ++E V       LA+ K     L++L+ G G 
Sbjct: 277 -----------------FFQSNLGLLPELVESVRKAVDEGLASGKSSDAWLIDLFSGVGF 319

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIA------ANHVNNVKIVRMSSKEFTQAMRRE 276
           F+ +L   F ++  VE  +  ++ A+ N++       +   +   V   + E        
Sbjct: 320 FACILQDKFRKITTVEREEGCLKHAKVNLSVPAAFPEDSAASRDCVASRTSEIENVSAPA 379

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334
            ++     +D+      T+ VDPPR+GL    +  +   +   ++Y+SC+P +L RD + 
Sbjct: 380 EDWLVENVVDV----PATLIVDPPRTGLPKEALTAIVKSSVNRLIYVSCDPVTLARDFAK 435

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364
            S     +     F  +P T H+E   +L R
Sbjct: 436 FSEAGFALSHAEGFAFYPQTPHLEMMFVLDR 466


>gi|306836263|ref|ZP_07469245.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC
           49726]
 gi|304567855|gb|EFM43438.1| SAM-dependent methyltransferase [Corynebacterium accolens ATCC
           49726]
          Length = 418

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 129/366 (35%), Gaps = 70/366 (19%)

Query: 12  QQLAEKVDRLRQMMLAFQVPNLQIFR------SEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
            +L  K+D LR+ +    +  L+              +R R    +   G      +   
Sbjct: 96  AELDIKMDVLREQLRRSGIEGLESLTIEQHDLPPVRGWRTRVRLGVDKQG---RAGLRKY 152

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           ++ E +              L+  ++  +  +   R         T  ++   V      
Sbjct: 153 RSNELVTSAGCT-------QLVDGLIDGLVGDGARR--------FTPGAEIVAV------ 191

Query: 126 LLDDAWRECAIRLRDALHARKY-QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
            LD A     +  R A   R+   I+ +   + T      +YV+ R         +    
Sbjct: 192 -LDGAGNRHVVETRKAPRGRRVETIREVIEGSGTV----AEYVNGR--------EFSFPA 238

Query: 185 NSFTQPN---AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIA 240
            +F Q +     I   +    LA     Q    +LY G G F+  L+     +V++V+ +
Sbjct: 239 TAFWQAHVAAPEIYSAVAGQWLAGRDYQQKIAWDLYGGVGLFAPALSEATGGKVISVDYS 298

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +    +       + ++ I   S+              +++ +     +   + +DPP
Sbjct: 299 PAATATTQP-----GLRDIDIAVKSA--------------KVEQVAAQLPQPGAVVLDPP 339

Query: 301 RSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHME 357
           R+G  +  +  V       ++++ C+P +  RDLS+  S  +  E++AL + FP T H E
Sbjct: 340 RTGAGEQVIRAVAEAKPQAVVHVGCDPATFARDLSLWQSAGYKPEKMALVNAFPGTHHFE 399

Query: 358 CGVLLV 363
              L+ 
Sbjct: 400 VIALIT 405


>gi|302327029|gb|ADL26230.1| putative RNA methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 445

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 131/391 (33%), Gaps = 69/391 (17%)

Query: 2   SGTLLIDQYEQQLA--EKVDR--LRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--- 54
             +L     E+Q    EKV+R   +++  A    +  I       YR RA      +   
Sbjct: 96  GCSLQHLASEKQAEYLEKVERENFKRLAHAELPEDFVIHTGNAWGYRNRARVVFRGNSGY 155

Query: 55  --GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
                       +++   +  +     +  +N  +    AT+  +         +D    
Sbjct: 156 GAAKRAAFGFRGEESNNIVPFEKCPVLTDGLNEFLRGPAATLLADNCHSGGRRDVDVNIF 215

Query: 113 QSDQAIVTLI---YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
            +    ++      H+   DA     + +          +                    
Sbjct: 216 DNGAGEISFYYPGMHKSDFDAHAISHVEIAGRKIEADASV-------------------- 255

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-------LAATKGIQGDLLELYCGNGN 222
                            F Q N G+   ++E V       LA+ K     L++L+ G G 
Sbjct: 256 -----------------FFQSNLGLLPELVESVRKAVDEGLASGKSSDAWLIDLFSGVGF 298

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIA------ANHVNNVKIVRMSSKEFTQAMRRE 276
           F+ +L   F ++  VE  +  ++ A+ N++       +   +   V   + E        
Sbjct: 299 FACILQDKFRKITTVEREEGCLKHAKVNLSVPAAFPEDSAASRDCVASRTSEIENVSAPA 358

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSI 334
            ++     +D+      T+ VDPPR+GL    +  +   +   ++Y+SC+P +L RD + 
Sbjct: 359 EDWLVENVVDV----PATLIVDPPRTGLPKEALTAIVKSSVNRLIYVSCDPVTLARDFAK 414

Query: 335 LST-THTIERLALFDQFPYTRHMECGVLLVR 364
            S     +     F  +P T H+E   +L R
Sbjct: 415 FSEAGFALSHAEGFAFYPQTPHLEMMFVLDR 445


>gi|46200920|ref|ZP_00056202.2| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 234

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 21/195 (10%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
           V    +       +F QP  G  + + E +++A       + +LYCG G+FSL LA    
Sbjct: 54  VHFGGIAVEPAPGAFLQPTKGGELAIAEAIVSAIPEGVP-VADLYCGCGSFSLPLALR-G 111

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V AVE  +  V A         +         S E     RR    + LK        +
Sbjct: 112 PVHAVEGEQGPVAALDAAARREGL-------ALSTEVRDLARRPLAVHELKA-------Y 157

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH----ILYISCNPDSLCRDLSILS-TTHTIERLALF 347
           + + +DPPR+G       + +  P     I  +SCNP +L RDL  L      IE +   
Sbjct: 158 RAVILDPPRAGAAAQAAELARPNPAGPATIAMVSCNPATLARDLRTLCDGGWHIEHIVPI 217

Query: 348 DQFPYTRHMECGVLL 362
           DQFP++ H+E   +L
Sbjct: 218 DQFPWSTHLEAVTIL 232


>gi|19553107|ref|NP_601109.1| SAM-dependent methyltransferase [Corynebacterium glutamicum ATCC
           13032]
 gi|62390742|ref|YP_226144.1| RNA methyltransferase [Corynebacterium glutamicum ATCC 13032]
 gi|51316625|sp|Q6M4B7|Y1903_CORGL RecName: Full=Uncharacterized RNA methyltransferase Cgl1903/cg2084
 gi|21324673|dbj|BAB99296.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326080|emb|CAF20243.1| PUTATIVE RNA METHYLTRANSFERASE [Corynebacterium glutamicum ATCC
           13032]
          Length = 412

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 127/368 (34%), Gaps = 72/368 (19%)

Query: 14  LAEKVDRLRQMMLAFQ----VPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           L  K   LR  +        +P  ++   EP   +R R    +              ++ 
Sbjct: 98  LEIKSRVLRDQLERIGGIDELPEFELQDLEPTAGWRTRVRLGV---DASGRAGFRKLKSN 154

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E +              ++ E++  +  E   R          +   + I        +D
Sbjct: 155 ELVTEVACS-------QVVPELLEGLVGEGARRF---------TPGVEIIA------AID 192

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           DA +   +  R A   R+ +  L       K+      V++++        ++   +SF 
Sbjct: 193 DAGQRHVVESRKAPRGRRTETVL-------KVLEGTGEVEQKVG----DYTWKFPVSSFW 241

Query: 189 QPNAGINVHMLEWVLAATKGIQ--------GDLLELYCGNGNFSLVL-ARHFDRVLAVEI 239
           Q +        E++  A  G++            +LY G G F+ ++ ++    V +VE+
Sbjct: 242 QAHTKAPAAYSEFIAEALTGLELVDVDKRGPVAWDLYGGVGLFAPIITSKLQAAVHSVEL 301

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  S EA     A   +  V       +     +                     + +DP
Sbjct: 302 SPGSAEAGEE--ALAGLP-VTFHTGRVEGMASQLPS----------------PNVVVLDP 342

Query: 300 PRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHM 356
           PR+G     +  +       +++I C+P +  RD++      + +++LA+F+ FP T H 
Sbjct: 343 PRTGAGSDVLKSIAEAKPQLVIHIGCDPATFARDVADWKLNGYEMDQLAVFNAFPGTHHF 402

Query: 357 ECGVLLVR 364
           E   + VR
Sbjct: 403 ETIGVFVR 410


>gi|213857923|ref|ZP_03384894.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 281

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 89/241 (36%), Gaps = 15/241 (6%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +V ++    S    YR RA   +    D    + F +  + + +
Sbjct: 47  QQRSKSAALARLM-KHEVNDIIAGAS--WGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 103

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 104 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 161

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   R     H+    + L   +   +         E        L        F Q N
Sbjct: 162 KEKLERFS---HSEGLSLFLAPFSEILETVSG-----EAPWYDSHGLRLTFSPRDFIQVN 213

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +N  M+   L        D +L+L+CG GNF+L LA     V+ VE  +  VE  R N
Sbjct: 214 EAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVQALVEKGREN 273

Query: 251 I 251
            
Sbjct: 274 A 274


>gi|300781039|ref|ZP_07090893.1| SAM-dependent methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300532746|gb|EFK53807.1| SAM-dependent methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 416

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 132/376 (35%), Gaps = 78/376 (20%)

Query: 12  QQLAEKVDRLRQMMLAFQVP-----------NLQIFRSEP-IHYRMRAEFHIWHDGDDLY 59
            Q   K + L   +     P           +L+    EP + +R R    +   G    
Sbjct: 93  AQTRFKREILVGQLEKHARPSGVLEGFDAAIDLEEESLEPTLGWRTRVRLGVDEQG---R 149

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
             M   +++E   I    P S ++   +                +   D   +   + +V
Sbjct: 150 AGMRRARSRE---IVAGQPCSQVVPEAL--------------DGIVGGDARFTPGAELVV 192

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
                  +D A +   +  R A   ++ +                D   E + VAG    
Sbjct: 193 V------VDGAGQRHVVETRRAQRGKRVEHIDTRIE-------GGDAATEIVPVAGEEFH 239

Query: 180 YRQIENSFTQPN----AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-----RH 230
           +     +F Q +    A  + ++L+W         G   +LY G G F   ++       
Sbjct: 240 FSFPPTAFWQAHLAAPAAYSAYILDWAADDYGERTG--WDLYGGVGLFVPSISAAMEGDQ 297

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             R+++V+ +  +    +  ++A +V+             +  + E   + L D  +   
Sbjct: 298 APRIVSVDYSPAATRTPQPALSAFNVD------------MRNQKVEAALDELPDPGL--- 342

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALF 347
               + +DPPR+G  +  V  + A     ++++ C+P +  RDL+      + +ER+AL 
Sbjct: 343 ----VVLDPPRTGAGENVVAGIAARRPQRVIHVGCDPATFTRDLATWGAAGYVVERMALI 398

Query: 348 DQFPYTRHMECGVLLV 363
           D FP T H E    LV
Sbjct: 399 DAFPATHHFEVLTSLV 414


>gi|397360|emb|CAA81021.1| yNucR endo-exonuclease [Saccharomyces cerevisiae]
 gi|486515|emb|CAA82134.1| RNC1 [Saccharomyces cerevisiae]
          Length = 617

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 120/336 (35%), Gaps = 43/336 (12%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHIWHDGDDLY 59
           Y+ QL  K   +      F          P      + P    YR +   H         
Sbjct: 259 YDDQLELKRKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLQFGYRTKITPHFDMPKRKQK 318

Query: 60  HIM------FDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLL--RAKLFQIDYL 110
            +       F Q+ + + R D    G    I  +   ++AT  L   L    + F+ ++ 
Sbjct: 319 ELSVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERRKFEQEFK 378

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-ICLDRDYVD- 168
             +    I+      +LD +         +A       I  +   +K   + L +  V  
Sbjct: 379 NYKKGATILLRENTTILDPSKPTLEQLTEEASRDENGDISYVEVEDKKNNVRLAKTCVTN 438

Query: 169 --ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGD------LLELYCG 219
             + +T       +      F Q N  I   + ++V        +GD      L++ YCG
Sbjct: 439 PRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCG 498

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           +G FS+  ++  D+V+ VEI+  SV  A  N  AN V N + +   +++  +++    E 
Sbjct: 499 SGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFESIDTPSE- 557

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                         ++ +DPPR G D+  +  + AY
Sbjct: 558 ------------NTSVILDPPRKGCDELFLKQLAAY 581


>gi|330876375|gb|EGH10524.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 364

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 101/269 (37%), Gaps = 16/269 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQA-LGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G      +    D +  RL    
Sbjct: 215 --VATAVLLRHTAPLAEADLALLQAFCSKHGAQLWLHGEGEPQPVSPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAREV 329

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           +AVE     VE A  N  +N ++NV+  R
Sbjct: 330 VAVEGVATMVERAAVNAMSNDLHNVQFFR 358


>gi|182678785|ref|YP_001832931.1| putative RNA methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634668|gb|ACB95442.1| putative RNA methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 430

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 139/378 (36%), Gaps = 43/378 (11%)

Query: 4   TLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHY--RMRAEFHIWHD------G 55
           TL +  Y Q    K   + +++     P+ +I      H   R RA  H           
Sbjct: 78  TLAMASYAQ---WKRGLVVEVL-RHACPDTKIAPLVDAHGDGRRRATLHARLSLEGQAPA 133

Query: 56  DDLYHIMFDQQTKERMRIDYFMP-GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
             +       ++   + +         L +AL   +     L  LL  K+   D++ + +
Sbjct: 134 GTMQVGFMRARSHALIALTSCPLFAPTLSSALPATLALAQTLAALLGPKIKPFDFIVTTT 193

Query: 115 DQAI-VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
              + + L     L          + + L +   ++ L   +N   + L+R+    R+  
Sbjct: 194 LTGLDIDLRGAGPLS-------KAVNEKLSSLALKLGLARLSNHGVVLLERETPLVRIGR 246

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
               L       +F Q        +   V+AA  G +  + +L+ G G FSL LA    +
Sbjct: 247 WNVAL----PPGAFLQATEAGEAALASRVVAALAGRR-KIADLFAGLGTFSLPLAESA-Q 300

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V A ++ +  + A      A  ++ V++ R               F R    ++  Y   
Sbjct: 301 VHAFDLEQAPLTALAKASHAPGLHPVEVERRD------------LFRRPLATELAGY--D 346

Query: 294 TIFVDPPRSGLDDAT-VGMVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
            I  DPPR+G +           P ++ +SCNP +  RD SIL +  + +  +   DQF 
Sbjct: 347 AIVFDPPRAGAEQQARALAASVVPVVVAVSCNPQTFARDASILRAGGYDLREVTPIDQFR 406

Query: 352 YTRHMECGVLLVRKPSGW 369
           ++ H+E   +  R+P   
Sbjct: 407 HSPHVELIGVFERQPQKK 424


>gi|108799166|ref|YP_639363.1| deoxyribonuclease [Mycobacterium sp. MCS]
 gi|119868281|ref|YP_938233.1| deoxyribonuclease [Mycobacterium sp. KMS]
 gi|108769585|gb|ABG08307.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. MCS]
 gi|119694370|gb|ABL91443.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. KMS]
          Length = 404

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 24/193 (12%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFD---RV 234
           ++R    +F Q +        E V+     G      +LY G G F+  LA       RV
Sbjct: 229 VWRVPVTAFWQAHRDAARRYSELVVQWAALGPGQTAWDLYGGAGVFAAALADQVGDGGRV 288

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L V+ ++ +  +AR   A   +  V++V  S +    A R                    
Sbjct: 289 LTVDTSRAAGRSARA--ALADLPQVRVVTDSVRRALSAERGAA---------------DV 331

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFP 351
             +DPPR+G     +  + A   P I++I C   S  RD+ + L   +T+E + +FD FP
Sbjct: 332 AVLDPPRAGAGREIIDAISAAGVPRIIHIGCEAASFARDVGLYLRAGYTVEEVRVFDSFP 391

Query: 352 YTRHMECGVLLVR 364
            T H+EC  +L R
Sbjct: 392 LTHHVECVAVLTR 404


>gi|297570912|ref|YP_003696686.1| deoxyribonuclease/rho motif-related TRAM [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931259|gb|ADH92067.1| deoxyribonuclease/rho motif-related TRAM [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 418

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 114/331 (34%), Gaps = 61/331 (18%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
           SE  HYR R    I     D    M   +T + + ++        +  L           
Sbjct: 140 SEGWHYRTR----IDVLKLDTGVGMHVMRTNDLVPLERIPLAVRAMEKL----------- 184

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
                     D   +  D  +      RL+  +  E          A    +       +
Sbjct: 185 ----------DVFGTAWDGHVPFKKRMRLVAPSGGEPL--------AVIDGVAFCEPGRR 226

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLEL 216
               +  D + E +T  G+   Y    NSF Q +      ++  V  A     GD L++L
Sbjct: 227 ----IGSD-IHEIVTYRGQLYDYTINVNSFWQIHEYAPSSLVAHVFDALGVELGDTLVDL 281

Query: 217 YCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           Y G+G FSLV A       RVLA E  + +   A+ N+ +    + +   + ++      
Sbjct: 282 YSGSGLFSLVGANIVGPGGRVLAFEGDERATSYAQQNLRSVPWASAQAATIDAENI---- 337

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRD 331
                   L D          +  DPPR+GL      M+       I  +SC+  S+ RD
Sbjct: 338 ------RSLTD------GADIVIADPPRAGLGVDAAMMLAQSDARRIALVSCDSASMARD 385

Query: 332 L-SILSTTHTIERLALFDQFPYTRHMECGVL 361
           + ++L     +E  A  D FP T  +E   +
Sbjct: 386 VSALLHAGRRLESFAAVDIFPNTHFVETVCV 416


>gi|126434774|ref|YP_001070465.1| deoxyribonuclease [Mycobacterium sp. JLS]
 gi|126234574|gb|ABN97974.1| deoxyribonuclease/rho motif-related TRAM [Mycobacterium sp. JLS]
          Length = 404

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 24/193 (12%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFD---RV 234
           ++R    +F Q +        E V+     G      +LY G G F+  LA       RV
Sbjct: 229 VWRVPVTAFWQAHRDAARRYSELVVQWAALGPGQTAWDLYGGAGVFAAALADQVGDGGRV 288

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L V+ ++ +  +AR   A   +  V++V  S +    A R                    
Sbjct: 289 LTVDTSRAAGRSARA--ALADLPQVRVVTDSVRRALSAERGAA---------------DV 331

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFP 351
             +DPPR+G     +  + A   P I++I C   S  RD+ + L   +T+E + +FD FP
Sbjct: 332 AVLDPPRAGAGREIIDAISAAGVPRIIHIGCEAASFARDVGLYLRAGYTVEEVRVFDSFP 391

Query: 352 YTRHMECGVLLVR 364
            T H+EC  +L R
Sbjct: 392 LTHHVECVAVLTR 404


>gi|315502657|ref|YP_004081544.1| deoxyribonuclease/rho motif-related tram [Micromonospora sp. L5]
 gi|315409276|gb|ADU07393.1| deoxyribonuclease/rho motif-related TRAM [Micromonospora sp. L5]
          Length = 436

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 118/367 (32%), Gaps = 74/367 (20%)

Query: 12  QQLAEKVDRLRQMMLAFQV----------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
            QL  K+  + + +                 ++     P+ +R R  + +          
Sbjct: 123 AQLDWKLSVVHEQLTRLGGLTAEQVDALGVRVEALPGGPLGWRSRVRYAV---DAAGRAG 179

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           +   ++ E + ID  +     I  L +                                 
Sbjct: 180 LLKHRSHEVVPIDRCLIAHPAIQDLPV--------------------------------- 206

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
               L     R       + + +    + ++   +     +      ER+        + 
Sbjct: 207 ----LPPTGARWPDADAVETVASTGGDVAVVAYTDGVPTAVSGP---ERVRETAAGRSFT 259

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF--DRVLAVE 238
              + F Q +      +   VL       G+   +LY G G F+  LA      RV  VE
Sbjct: 260 LPASGFWQVHPAAADALTGAVLDLLDPRPGETAWDLYGGAGLFAAALAERVDGARVTLVE 319

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            A   V AAR N+A     +++ V + +     A+ R R           +     + +D
Sbjct: 320 SAPDGVAAARQNLA-----DLRAVEVVAARVEAALSRRR----------ITGPVDLVVLD 364

Query: 299 PPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRH 355
           PPRSG   A V  V A     + Y++C+P +  RD+   +     +  L  FD FP T+H
Sbjct: 365 PPRSGAGAAVVRGVVAAGPRAVAYVACDPAAFARDVRTFAEAGWRLAALRGFDLFPMTQH 424

Query: 356 MECGVLL 362
           +E   L 
Sbjct: 425 VELVGLF 431


>gi|96865|pir||B37321 tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35) - Salmonella
           typhimurium (fragment)
          Length = 111

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYHIMF 63
           L  +QYE QLAEKV RL+ MM  F     ++F+  P  HYRMRAEF +WHDGDDLYHIMF
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFQLMPVSHYRMRAEFRLWHDGDDLYHIMF 65

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
           DQQT  R+R+D F   S LIN LM  M+A +R    LR KLFQIDY
Sbjct: 66  DQQTFCRIRVDTFPAASQLINTLMKAMIAGVRDNHALRHKLFQIDY 111


>gi|15842227|ref|NP_337264.1| hypothetical protein MT2763 [Mycobacterium tuberculosis CDC1551]
 gi|254232795|ref|ZP_04926122.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis C]
 gi|13882517|gb|AAK47078.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|124601854|gb|EAY60864.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis C]
          Length = 434

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 24/194 (12%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RV 234
            +R    +F Q +        + +    +   G    +LY G G F+ VL        RV
Sbjct: 257 SWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRV 316

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L V+ ++ +  AAR   A   +  V++V  S +                   +       
Sbjct: 317 LTVDTSRLASGAAR--AALVDLPQVEVVTGSVRRVLA---------------VQPAGADL 359

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
             +DPPRSG     V ++     P +++I C   S  RD+ +     + +E++ +FD FP
Sbjct: 360 AVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFP 419

Query: 352 YTRHMECGVLLVRK 365
            T ++EC  LL RK
Sbjct: 420 LTHYVECVALLTRK 433


>gi|149197919|ref|ZP_01874968.1| RNA methyltransferase [Lentisphaera araneosa HTCC2155]
 gi|149139140|gb|EDM27544.1| RNA methyltransferase [Lentisphaera araneosa HTCC2155]
          Length = 399

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 140/377 (37%), Gaps = 36/377 (9%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQV---PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
            YEQ+L  K D   + +    V       I   +P HYR   +  ++ +G  +    F +
Sbjct: 36  NYEQELKLKNDAFAKFLQKAGVQKQAQSIIASPKPRHYRTTTKRRVFQEGAGIGLG-FSK 94

Query: 66  QTKERMRIDYFMPGSLL--INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
             K  + ++  +  S    I   + + ++      L RA       +    D+  + L  
Sbjct: 95  PVKAGVCLESDLEPSEHHDIYHFLQKTLSKRTYYSLARAL--NWLIIRGNYDRQFLILNI 152

Query: 124 HRLLDDAWRECAIRLRDAL--HARKYQIQLIGRANKTKICLDRD-----------YVDER 170
            ++  D  R+  + L + L          +    +++   L+ +           +    
Sbjct: 153 FKMDADVMRKVKL-LVNVLKKENIVEGAMVYFDPSRSDYYLEAERPVKTMQIKHLFGPRL 211

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR 229
           L +    ++ R     F+Q N  +   M+E      K  + D+L +LYCG G FS  L +
Sbjct: 212 LGLKVDDVLMRYSPIGFSQVNESMVPEMVELAKTMLKASKDDVLLDLYCGYGLFSHTLGQ 271

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               VL  E++  ++++A+        +N            +    + + N + +    +
Sbjct: 272 SCKNVLGYEMSTTAIDSAKEISKRLKSHNR----------MKFFAEKIDANLVHNKFSQA 321

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRD-LSILSTTHTIERLAL 346
            + + + +DPPR G +   +  +       +L I C  D + ++ L      +  + +  
Sbjct: 322 KQTELMLLDPPRQGCEPGVIAQLAKRRPKRVLQIFCGTDVVPKEILEWQKQGYKAKVIQP 381

Query: 347 FDQFPYTRHMECGVLLV 363
            D F  T ++E  VL  
Sbjct: 382 IDMFAGTPNLETMVLFE 398


>gi|213029277|ref|ZP_03343724.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 100

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 65/93 (69%)

Query: 5  LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
          L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF +WHDGD+LYHIMFD
Sbjct: 6  LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHYRMRAEFRLWHDGDNLYHIMFD 65

Query: 65 QQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
          QQTK R+R+D F   S LIN LM  M+A +R  
Sbjct: 66 QQTKSRIRVDTFPAASQLINTLMKAMIAGVRDN 98


>gi|260948450|ref|XP_002618522.1| hypothetical protein CLUG_01981 [Clavispora lusitaniae ATCC 42720]
 gi|238848394|gb|EEQ37858.1| hypothetical protein CLUG_01981 [Clavispora lusitaniae ATCC 42720]
          Length = 473

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 108/338 (31%), Gaps = 63/338 (18%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQV-------PNLQIFRSEP--IHYRMRA--EF 49
           SG    +  Y+ QL  K   +      F         P +   +S P   HYR +    F
Sbjct: 164 SGCQYQNVDYDTQLEFKRQTIVNAYKYFAPKLSLGGLPEVAPTQSSPLKYHYRTKLTPHF 223

Query: 50  ----HIWHDGDDLYHIMFDQQTKE----------RMRIDYFMPGSLLINALMIEMMATIR 95
                I  D          +   +           + I+    G+ ++N  M        
Sbjct: 224 NVPNKIPQDYTRPSIGFGAKGRPQWRKTEGGDYSILDIEECAIGTEIVNQGMDNERKRFE 283

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
                       +        A V L  + LL D+  +  +    +        Q+    
Sbjct: 284 ------------ENFKKYKRGATVLLRENTLLPDSEGKFNVE-SGSTTPEGSISQIEVEV 330

Query: 156 NKTKICLDRDYVDE---RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK----- 207
           N TK+   +  + E    +T       +      F Q N  I   +  +V          
Sbjct: 331 NDTKLL--KTCITEPRTIVTEYVNGYTFEFSAGEFFQNNNSILPLVTNYVKENLHIRGSG 388

Query: 208 -GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
                 L++ YCG+G FS+  +    +V+ VE++  SV+ A  N   N + N   +   +
Sbjct: 389 PDEPNYLVDAYCGSGLFSITCSTGVSKVIGVEVSADSVKFAERNAKTNKIENASFIVGKA 448

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +E              K+ID  + R   I  DPPR G+
Sbjct: 449 EEIF------------KNIDTPAARTSVIL-DPPRKGM 473


>gi|289570865|ref|ZP_06451092.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T17]
 gi|289544619|gb|EFD48267.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T17]
          Length = 382

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 24/194 (12%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RV 234
            +R    +F Q +        + +    +   G    +LY G G F+ VL        RV
Sbjct: 205 SWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRV 264

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L V+ ++ +  AAR   A   +  V++V  S +                   +       
Sbjct: 265 LTVDTSRLASGAAR--AALVDLPQVEVVTGSVRRVLA---------------VQPAGADL 307

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
             +DPPRSG     V ++     P +++I C   S  RD+ +     + +E++ +FD FP
Sbjct: 308 AVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFP 367

Query: 352 YTRHMECGVLLVRK 365
            T ++EC  LL RK
Sbjct: 368 LTHYVECVALLTRK 381


>gi|38233983|ref|NP_939750.1| hypothetical protein DIP1398 [Corynebacterium diphtheriae NCTC
           13129]
 gi|51316648|sp|Q6NGV2|Y1398_CORDI RecName: Full=Uncharacterized RNA methyltransferase DIP1398
 gi|38200245|emb|CAE49929.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
          Length = 420

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 113/370 (30%), Gaps = 67/370 (18%)

Query: 15  AEKVDRLRQMMLAF----QVPNLQIFR-SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
             K D + + +       Q P  ++     P  +R R    +   G         ++   
Sbjct: 100 RYKADLVLEQLERLGKVSQPPTCEVVSFGSPTQWRTRMRLGVDAQGRAGGFASQSREVVS 159

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            +     + G          ++  I            +   T  S   +V        DD
Sbjct: 160 GVPCSQGVMG----------LLDGIVGAEQ------NVLRFTPGSQVVVVC-------DD 196

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
             +   +  + A   ++ +  +       K+           +     + +      F Q
Sbjct: 197 LGQRTVVETQPAPRGKRTESMVKVVEGTGKV-----------SQVVDGVTFELPATGFWQ 245

Query: 190 PNAGINVHMLEWVLAAT-------KGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEI 239
            +        + +                   +LY G G+F+  +    D    V  VE 
Sbjct: 246 SHKDAAQAYADTIREWFGSLIIRNTDSSLVAWDLYGGCGSFASAILSAVDNHGVVHCVES 305

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           A  +V A +  ++         +    K        ER  N+L            + +DP
Sbjct: 306 APAAVSAGKRALSQ--------LVEDQKIVFHTETVERAMNQLPA-------PTLVVLDP 350

Query: 300 PRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356
           PR G    TV  +        ++I C+P +  RD++  S     +E+L +FD FP T H 
Sbjct: 351 PRVGAGAETVRAIAQSGPQAAIHIGCDPATFARDIAEWSRNGFILEKLRVFDAFPGTHHC 410

Query: 357 ECGVLLVRKP 366
           E   LL +K 
Sbjct: 411 ETIGLLTKKN 420


>gi|15609826|ref|NP_217205.1| hypothetical protein Rv2689c [Mycobacterium tuberculosis H37Rv]
 gi|31793861|ref|NP_856354.1| hypothetical protein Mb2708c [Mycobacterium bovis AF2122/97]
 gi|121638564|ref|YP_978788.1| hypothetical protein BCG_2702c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662530|ref|YP_001284053.1| hypothetical protein MRA_2717 [Mycobacterium tuberculosis H37Ra]
 gi|148823879|ref|YP_001288633.1| hypothetical protein TBFG_12704 [Mycobacterium tuberculosis F11]
 gi|167970088|ref|ZP_02552365.1| conserved alanine valine and glycine rich protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215404653|ref|ZP_03416834.1| hypothetical protein Mtub0_13403 [Mycobacterium tuberculosis
           02_1987]
 gi|215412496|ref|ZP_03421230.1| hypothetical protein Mtub9_14130 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428115|ref|ZP_03426034.1| hypothetical protein MtubT9_17663 [Mycobacterium tuberculosis T92]
 gi|215431629|ref|ZP_03429548.1| hypothetical protein MtubE_13343 [Mycobacterium tuberculosis
           EAS054]
 gi|215446943|ref|ZP_03433695.1| hypothetical protein MtubT_13777 [Mycobacterium tuberculosis T85]
 gi|224991056|ref|YP_002645745.1| hypothetical alanine and valine and glycine rich protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798229|ref|YP_003031230.1| hypothetical protein TBMG_01284 [Mycobacterium tuberculosis KZN
           1435]
 gi|254365350|ref|ZP_04981395.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|260187706|ref|ZP_05765180.1| hypothetical protein MtubCP_16984 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201816|ref|ZP_05769307.1| hypothetical protein MtubT4_17400 [Mycobacterium tuberculosis T46]
 gi|260205999|ref|ZP_05773490.1| hypothetical protein MtubK8_17045 [Mycobacterium tuberculosis K85]
 gi|289444231|ref|ZP_06433975.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T46]
 gi|289448344|ref|ZP_06438088.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553525|ref|ZP_06442735.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289575387|ref|ZP_06455614.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289746490|ref|ZP_06505868.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289751341|ref|ZP_06510719.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T92]
 gi|289754791|ref|ZP_06514169.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289758817|ref|ZP_06518195.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|294994218|ref|ZP_06799909.1| hypothetical protein Mtub2_06818 [Mycobacterium tuberculosis 210]
 gi|297635297|ref|ZP_06953077.1| hypothetical protein MtubK4_14295 [Mycobacterium tuberculosis KZN
           4207]
 gi|297732293|ref|ZP_06961411.1| hypothetical protein MtubKR_14444 [Mycobacterium tuberculosis KZN
           R506]
 gi|298526159|ref|ZP_07013568.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306776968|ref|ZP_07415305.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|306780871|ref|ZP_07419208.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu002]
 gi|306785495|ref|ZP_07423817.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|306790092|ref|ZP_07428414.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu004]
 gi|306798595|ref|ZP_07436897.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu006]
 gi|306804453|ref|ZP_07441121.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu008]
 gi|306807509|ref|ZP_07444177.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|306968748|ref|ZP_07481409.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|306973083|ref|ZP_07485744.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|307080792|ref|ZP_07489962.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu011]
 gi|307085384|ref|ZP_07494497.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|313659626|ref|ZP_07816506.1| hypothetical protein MtubKV_14449 [Mycobacterium tuberculosis KZN
           V2475]
 gi|2181980|emb|CAB09480.1| CONSERVED HYPOTHETICAL ALANINE AND VALINE AND GLYCINE RICH PROTEIN
           [Mycobacterium tuberculosis H37Rv]
 gi|31619455|emb|CAD94893.1| CONSERVED HYPOTHETICAL ALANINE AND VALINE AND GLYCINE RICH PROTEIN
           [Mycobacterium bovis AF2122/97]
 gi|121494212|emb|CAL72690.1| Conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|134150863|gb|EBA42908.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148506682|gb|ABQ74491.1| conserved hypothetical alanine,valine and glycine rich protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148722406|gb|ABR07031.1| conserved alanine valine and glycine rich protein [Mycobacterium
           tuberculosis F11]
 gi|224774171|dbj|BAH26977.1| hypothetical alanine and valine and glycine rich protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319732|gb|ACT24335.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417150|gb|EFD14390.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T46]
 gi|289421302|gb|EFD18503.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis CPHL_A]
 gi|289438157|gb|EFD20650.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis KZN 605]
 gi|289539818|gb|EFD44396.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289687018|gb|EFD54506.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289691928|gb|EFD59357.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis T92]
 gi|289695378|gb|EFD62807.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289714381|gb|EFD78393.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298495953|gb|EFI31247.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308214625|gb|EFO74024.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu001]
 gi|308326272|gb|EFP15123.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu002]
 gi|308329852|gb|EFP18703.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308333443|gb|EFP22294.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308341112|gb|EFP29963.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308346104|gb|EFP34955.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308348938|gb|EFP37789.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu008]
 gi|308353635|gb|EFP42486.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu009]
 gi|308357482|gb|EFP46333.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu010]
 gi|308361436|gb|EFP50287.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu011]
 gi|308365031|gb|EFP53882.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu012]
 gi|323718685|gb|EGB27847.1| hypothetical protein TMMG_02698 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904303|gb|EGE51236.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis W-148]
 gi|328458001|gb|AEB03424.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis KZN 4207]
          Length = 405

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 26/231 (11%)

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI--YRQIENSFTQPNAGINVHMLEW 201
             ++ +  + +  + +     + V+       R     +R    +F Q +        + 
Sbjct: 191 GERHVVCSVRQGPRNRTRTVTNVVEGAYHAHQRVHRRSWRVPVTAFWQAHRDAAAVYSDL 250

Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVN 257
           +    +   G    +LY G G F+ VL        RVL V+ ++ +  AAR   A   + 
Sbjct: 251 IADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRVLTVDTSRLASGAAR--AALVDLP 308

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--Y 315
            V++V  S +                   +         +DPPRSG     V ++     
Sbjct: 309 QVEVVTGSVRRVLA---------------VQPAGADLAVLDPPRSGAGREVVDLLAGAGV 353

Query: 316 PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           P +++I C   S  RD+ +     + +E++ +FD FP T ++EC  LL RK
Sbjct: 354 PRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFPLTHYVECVALLTRK 404


>gi|308373477|ref|ZP_07432477.2| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308337510|gb|EFP26361.1| conserved alanine, valine and glycine rich protein [Mycobacterium
           tuberculosis SUMu005]
          Length = 397

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 24/194 (12%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RV 234
            +R    +F Q +        + +    +   G    +LY G G F+ VL        RV
Sbjct: 220 SWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRV 279

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L V+ ++ +  AAR   A   +  V++V  S +                   +       
Sbjct: 280 LTVDTSRLASGAAR--AALVDLPQVEVVTGSVRRVLA---------------VQPAGADL 322

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
             +DPPRSG     V ++     P +++I C   S  RD+ +     + +E++ +FD FP
Sbjct: 323 AVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFP 382

Query: 352 YTRHMECGVLLVRK 365
            T ++EC  LL RK
Sbjct: 383 LTHYVECVALLTRK 396


>gi|218754425|ref|ZP_03533221.1| hypothetical protein MtubG1_13794 [Mycobacterium tuberculosis GM
           1503]
 gi|254551745|ref|ZP_05142192.1| hypothetical protein Mtube_15022 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289762860|ref|ZP_06522238.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis GM 1503]
 gi|289710366|gb|EFD74382.1| conserved hypothetical alanine and valine and glycine rich protein
           [Mycobacterium tuberculosis GM 1503]
          Length = 405

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 24/194 (12%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RV 234
            +R    +F Q +        + +    +   G    +LY G G F+ VL        RV
Sbjct: 228 SWRVPVTAFWQAHRDAAAVYSDLIADWAQPAPGMTAWDLYGGAGVFAAVLGEAVGESGRV 287

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L V+ ++ +  AAR   A   +  V++V  S +                   +       
Sbjct: 288 LTVDTSRLASGAAR--AALVDLPQVEVVTGSVRRVLA---------------VQPAGADL 330

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFP 351
             +DPPRSG     V ++     P +++I C   S  RD+ +     + +E++ +FD FP
Sbjct: 331 AVLDPPRSGAGREVVDLLAGAGVPRLIHIGCEAASFARDIGLYRGHGYAVEKIKVFDAFP 390

Query: 352 YTRHMECGVLLVRK 365
            T ++EC  LL RK
Sbjct: 391 LTHYVECVALLTRK 404


>gi|5738225|gb|AAD50302.1| RNA methyltransferase homolog [Vibrio cholerae]
          Length = 110

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 14/121 (11%)

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A +N   N +NNV   + + ++             +        +F  + +DP R+G + 
Sbjct: 1   ATHNAKLNQINNVAFYQANLEQ------------DMTSASWAQQKFAKVLLDPARAGAEG 48

Query: 307 ATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
               + V     ++Y+SCNP +L RD  S+LS    +E+L + D FP+T H+E   L V+
Sbjct: 49  IVDQLSVLGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFVK 108

Query: 365 K 365
           K
Sbjct: 109 K 109


>gi|328773587|gb|EGF83624.1| hypothetical protein BATDEDRAFT_34298 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 823

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 21/171 (12%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            G    LL+L CG G   + LA HF +V+ VE+ + +++ A  N   N V N   +    
Sbjct: 662 DGSNTVLLDLCCGTGTIGITLASHFKKVVGVELVQEAIDNAIVNAQDNGVTNAVYLCGKV 721

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISC 323
           +E         +   +    +         +DP R G++   +  ++A     H++YISC
Sbjct: 722 EE---------KIGEVFRNHVGPEDQVVAVLDPARVGVNGTVIAAIRACRHLKHVVYISC 772

Query: 324 NPDSLCRDLSILSTT----HTIERLAL-----FDQFPYTRHMECGVLLVRK 365
           +    C +   L       +             D FP+T   E  V   R+
Sbjct: 773 DAKQACSNFVELCRPTSKRYQGTPFRPVQGTTVDLFPHTMPCELVVSFARE 823


>gi|255325118|ref|ZP_05366224.1| TRAM domain protein [Corynebacterium tuberculostearicum SK141]
 gi|255297683|gb|EET76994.1| TRAM domain protein [Corynebacterium tuberculostearicum SK141]
          Length = 407

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 119/360 (33%), Gaps = 68/360 (18%)

Query: 17  KVDRLRQMMLAFQVP-----NLQIFRSEPIH-YRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           K + L + +    V      N++    EP+  +R R     W            +++ E 
Sbjct: 101 KAEILSEQLRRTGVVTGEELNIEQHTLEPVRGWRTRVR---WGVDKQGRAGTRQRRSNEL 157

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           +              L   +   +  E   R          +   + I        LD  
Sbjct: 158 VTGAACT-------QLAPGLAEGLVGEGARRF---------TPGAEVIAV------LDGD 195

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                +  R A   R+ +          K+    ++VD R         +     +F Q 
Sbjct: 196 GNRHVVETRKAPRGRRVETIREVVEGSGKV---HEHVDGR--------TFSFPATAFWQA 244

Query: 191 NAGINVHMLEWVLAATKGIQ---GDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEA 246
           ++       + +     G +       +LY G G F   LA     +V++V+ +  +   
Sbjct: 245 HSHAPAAYTDLIAEWLGGREYQEHTAWDLYGGVGLFVPALAHAVQGKVISVDYSPAATAG 304

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            +  +A     +V++     ++    +                 +   + +DPPR+G  +
Sbjct: 305 EQAALAD---CDVEVKSAKVEQVAAQLP----------------KPGAVVLDPPRTGAGE 345

Query: 307 ATVG--MVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
             +      A   ++++ C+P +  RDL   +   + IE++AL + FP T H E   L+ 
Sbjct: 346 DVIRSVAAAAPQTVVHVGCDPATFARDLGYWNQHGYGIEKMALINAFPGTHHFETIALIT 405


>gi|225619621|ref|YP_002720878.1| TrmA family RNA methyltransferase [Brachyspira hyodysenteriae WA1]
 gi|225214440|gb|ACN83174.1| RNA methyltransferase, TrmA family [Brachyspira hyodysenteriae WA1]
          Length = 398

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 138/375 (36%), Gaps = 59/375 (15%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVP-NLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
            G L    +Y +QL  K + +   +       ++++   E I+YR+R         D+  
Sbjct: 73  GGCLFNHIEYNKQLDTKKNVVLNAIRNIDFNNDIKMIYGENINYRLRVNM----IADNGK 128

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
              +  ++ + + ID  +        L   +   I+           I  + + +++A+ 
Sbjct: 129 IGFYRFKSNDFVNIDECII-------LKESLFEKIKNFASENNITGSIYAIENNNNEALA 181

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            +  ++ ++   +      +      K    +    + T I     Y +  + +  +T  
Sbjct: 182 FIELNKKIN--IKCFEKYFKGI--TIKNNKNIKSYGSDT-ILYKTKYGN--IPIGHKT-- 232

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD------R 233
                  F Q N  +       V+         ++ELY G+G F+  L           +
Sbjct: 233 -------FFQSNLYLLDDFQYNVIKYLSDNDSSIVELYAGSGFFTSALENKIKSFNNHYK 285

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
            +A EI K SV                   + + ++   ++ E     LK+ID   Y   
Sbjct: 286 FIASEINKDSV-------------------LIANKYDLKIKNEDALITLKNID---YDID 323

Query: 294 TIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
            + +DPPR G++   V   +      I+Y+SC+P +  RD+++L   + +  L + D F 
Sbjct: 324 ALILDPPREGMNKNVVEEIIRIKPKKIIYVSCDPMTFARDINLLKEYYNLSDLNIIDMFA 383

Query: 352 YTRHMECGVLLVRKP 366
            T H+E    L  K 
Sbjct: 384 DTYHIELISFLEYKD 398


>gi|324116073|gb|EGC09997.1| rumB protein [Escherichia coli E1167]
          Length = 120

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 18/134 (13%)

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           ++  +EIA  ++  A+ + A   +  ++   + S +F  A                    
Sbjct: 2   QLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATA---------------QGEVP 46

Query: 293 KTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
           + + V+PPR G+       +    P  I+Y SCN  ++ +D+  L   + IER+ LFD F
Sbjct: 47  ELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDIREL-PGYRIERVQLFDMF 105

Query: 351 PYTRHMECGVLLVR 364
           P+T H E   LLV+
Sbjct: 106 PHTAHYEVLTLLVK 119


>gi|237785642|ref|YP_002906347.1| putative SAM-dependent methyltransferase [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758554|gb|ACR17804.1| putative SAM-dependent methyltransferase [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 463

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 117/367 (31%), Gaps = 31/367 (8%)

Query: 17  KVDRLRQMMLAFQVPNLQ-IFR--SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI 73
           K       M      +++  F   S    +R R    +    D+    +  +     +  
Sbjct: 109 KASITADQMRRIGHFDVEPTFETLSPYRGWRTRMRLAV---DDEGRAGLRVKSGHRVVTN 165

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLL------RAKLFQIDYLTSQSDQAIVTLIYHRLL 127
                 +  +   +  M  T   E +L         + ++D   S   ++          
Sbjct: 166 AVCSQAAPGLMDGLDAMRFTPGAEVILALDSNGIRHIVEVDGGASSKQRSGAARPRTSRR 225

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
                   I   +    R         +  +   +      E    +     +     +F
Sbjct: 226 GRRGHSTVIEGGNYCVERISHNAASTPSEPSNNLVGNSGAGEGAAHSAEGRTFVLPPTAF 285

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHF-DRVLAVEIAKPSVE 245
            Q ++G      E V      + G    +LY G G F+ +LA      V +VEI K +  
Sbjct: 286 WQAHSGAPTRYRELVRELLPEVHGGAAWDLYGGIGLFADILAEKTRGPVDSVEIDKNART 345

Query: 246 AARYNIAANHVNNVKI----VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             R ++  N +         +R  +    +A    R  N+             + +DPPR
Sbjct: 346 WGRRSL--NTLAEPSFSPSSIRFLTSRVDRAWSSLRRNNK--------GGVDLVVLDPPR 395

Query: 302 SGLDDATVGMVQA--YPHILYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMEC 358
            G     +G + A     +++I+C+P +  RD  + L   + I  + + D FP T HME 
Sbjct: 396 KGAGTKVIGQIAAAHPEAVVHIACDPATGARDYAAWLDHGYEISSMRVIDAFPGTHHMEI 455

Query: 359 GVLLVRK 365
                ++
Sbjct: 456 ITAFTKR 462


>gi|120403465|ref|YP_953294.1| (Uracil-5)-methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119956283|gb|ABM13288.1| (Uracil-5)-methyltransferase [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 22/243 (9%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
           L D  W   ++            +   G+  +T +        +R+        +R    
Sbjct: 171 LADTQWPAGSVVHVVVDDDGNRHVAHTGKGQRTAVVEGGYEAVQRVA----GRTWRVPVT 226

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F Q +          V    +   G    +LY G G F+  LAR      AV     S 
Sbjct: 227 AFWQAHRDAPALYSALVAQWAQLEAGMTAWDLYGGAGVFAAALARGVGDTGAVTTVDTSR 286

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A+R                +    T ++RR     R         R     +DPPR+G 
Sbjct: 287 GASRA------ARAALADLGNVSVVTDSVRRALTGQR--------TRADVAVLDPPRTGA 332

Query: 305 DDATVGMVQA--YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVL 361
               V ++ A   P I++I C   S  RD+ + L   + +E L +FD FP T H+EC  +
Sbjct: 333 GREVVDLLAAAEVPRIIHIGCEAASFARDVGLYLGHGYAVEELRVFDSFPLTHHVECVAV 392

Query: 362 LVR 364
           L R
Sbjct: 393 LTR 395


>gi|302382937|ref|YP_003818760.1| (uracil-5)-methyltransferase [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193565|gb|ADL01137.1| (Uracil-5)-methyltransferase [Brevundimonas subvibrioides ATCC
           15264]
          Length = 412

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 119/361 (32%), Gaps = 38/361 (10%)

Query: 14  LAEKVDRLRQMMLA--FQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           L  K D++   +     +          P   R  A      +   +      +++   +
Sbjct: 80  LDWKRDQVVAALARERIETEVEATVAVPPGTRRRLALHARRLEDGRVVLGFKARKSWRLV 139

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            +         + A    +  MA   LE    A    + + T       VT +  R    
Sbjct: 140 EVTTCPVADPRLVAAFPLLAKMAGAFLEHPKSAPTLHVTW-TLDGLDVDVTGVERRSGGL 198

Query: 130 AWRECAIRLRDALHARKYQIQLIG----RANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
           +       +R A      ++ L G     A + ++      V                  
Sbjct: 199 SADRQMQAIRAAGEGDLARLSLAGETLVMARQPRVRFGPATVP-------------LPAG 245

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            F Q        M    +AA KG +  + +L+CG G F+  LA    RV+A + +     
Sbjct: 246 GFLQAVPEAEDAMTSRAVAAVKGAK-VVADLFCGAGTFTFPLAT-VARVIAADASAAG-- 301

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
                     +  +K+   S+K       + R+  R           + I  DPPR+G  
Sbjct: 302 ----------IAALKVGIGSAKGMKAIEAQARDLFRRPLTPFDLKACEAIVFDPPRAGAI 351

Query: 306 DATVGMVQAYPHILY-ISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
           D T  +      ++  +SCNP +  RD  +L  +   +E +   DQF ++ H+E   +  
Sbjct: 352 DQTAQIAGTKAAVVVGVSCNPQTFARDARVLIDSGFRLETVTPVDQFLWSSHVELVGVFR 411

Query: 364 R 364
           R
Sbjct: 412 R 412


>gi|145594035|ref|YP_001158332.1| deoxyribonuclease [Salinispora tropica CNB-440]
 gi|145303372|gb|ABP53954.1| deoxyribonuclease/rho motif-related TRAM [Salinispora tropica
           CNB-440]
          Length = 412

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 110/369 (29%), Gaps = 78/369 (21%)

Query: 11  EQQLAEKVDRLRQMMLAFQVP----------NLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           E QL  K   +R+ +                 ++      + +R R  + +         
Sbjct: 96  EAQLTWKAGVIREQLTRLGGLTGAELDALGIQVEALPGGSLGWRSRVRYTV---DGAGRA 152

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
            +   ++ E + ID        I  L +  +     +         ++ + +      VT
Sbjct: 153 GLLKHRSYEVVPIDRCRIAHPAIQQLPVLGVRWPDADA--------VESVATTGGDVTVT 204

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
            +                                              ER+        +
Sbjct: 205 AVADGAARPV-----------------------------------SGPERVHEQAAGRRW 229

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLA 236
               ++F Q +      ++  VLA      G+   +LY G G F+  LA       RV  
Sbjct: 230 TLSPSAFWQVHPAAADTLVNAVLAQLDPRPGETAWDLYGGAGLFAAALAERVGTTGRVTL 289

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE A   V AAR N+    +    IV                          +     + 
Sbjct: 290 VEAAGAGVAAARQNLR--DLPQAGIVSGRVAPVLAR-------------GQVAGPVDVVV 334

Query: 297 VDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           +DPPRSG     V  V       + Y++C+P +  RD+   +     +  L  FD FP T
Sbjct: 335 LDPPRSGAGAGVVRAVAGTGARAVAYVACDPAAFARDVRGFAELGWRLTALRGFDLFPMT 394

Query: 354 RHMECGVLL 362
           +H+E   LL
Sbjct: 395 QHVELVGLL 403


>gi|324506298|gb|ADY42693.1| tRNA (uracil-5-)-methyltransferase A [Ascaris suum]
          Length = 693

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 27/174 (15%)

Query: 213 LLELYCGNGNFSLVL------ARHFDR--VLAVEIAKPSVEAARYNIAANHVNN--VKIV 262
           +L++ CG G   L L      ++   R  ++ +E+   ++E A+ N + N         V
Sbjct: 525 ILDVCCGTGTIGLCLLSLLKNSKSAGRRYLVGIEVVPEAIEDAKCNASENMFTEEECCFV 584

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT---VGMVQAYPHIL 319
              ++E  + +R     + +              +DPPR+G+ +       M+ +   ++
Sbjct: 585 SGKAEEVFRGLR-----HYMPTSVKLDEANVVAILDPPRAGIHEKVVLGCRMLSSLKRLI 639

Query: 320 YISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVLLVR 364
           ++SC P    ++L  L             T+  +   D FP T+H E  V L R
Sbjct: 640 FVSCEPSLALKNLVDLCRPRSKKYDGEPFTLTSITPVDMFPQTKHCEWVVQLDR 693



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 76/249 (30%), Gaps = 56/249 (22%)

Query: 5   LLIDQYEQQLAEKVDRLRQM------------------MLAFQVPNLQIFRSEPIHYRMR 46
           L    Y +QL  K+   +++                  + A+++        +   YR +
Sbjct: 166 LADIDYNEQLERKMADAKRLATTLVRQMVSANVKDARAINAWKLVQPIRRSPQTSGYRNK 225

Query: 47  AEFHIWHDGDDLY-----HIMFDQQTKERMRIDYFMPGSL----LINALMIEMMAT--IR 95
            EF + HD +           F       + +D     S     ++NA    ++ +    
Sbjct: 226 CEFTVGHDLEGNICVGFVGGRFSASLHYILPMDKCTNISDRMKGIVNAFQKFVVDSEQAP 285

Query: 96  LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
                R  L+++  +    D  ++ +    + D    E   +L++AL  R  ++  +   
Sbjct: 286 FNEFERIGLWKMLTVREFVDDVMIIVTIFPMTDS---EKEGQLKEALVERFLRVDALSEE 342

Query: 156 ----NKTKICL----------------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
                 T I                     Y+ E +      + +R    +F Q N+   
Sbjct: 343 ENKFRVTSIYWQKLANASDPPIYEHIAGTPYIYETIV----GVRFRVSPGAFFQTNSYGA 398

Query: 196 VHMLEWVLA 204
             +   +  
Sbjct: 399 AVLYSTIAE 407


>gi|296393670|ref|YP_003658554.1| deoxyribonuclease/rho motif-related TRAM [Segniliparus rotundus DSM
           44985]
 gi|296180817|gb|ADG97723.1| deoxyribonuclease/rho motif-related TRAM [Segniliparus rotundus DSM
           44985]
          Length = 390

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 122/359 (33%), Gaps = 72/359 (20%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           L  K   + + +        +       EP  +R R    +   G   +H      +KE 
Sbjct: 92  LELKGRVVAEQLARLGKVAWEGCAEVLGEPTRWRTRVRLAVDQAGRAGFHRYH---SKEL 148

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           +                  +   +     LR        L + ++  +V         D 
Sbjct: 149 VSDLACP----------QPVAGALDGLQKLR--------LPAGAEVFVVV--------DD 182

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                ++L D    R+    L G    T+   +R              ++R    +F QP
Sbjct: 183 EGARHVQLADRTRGRR---NLEGPGIATQRVGER--------------VWRVPVQAFWQP 225

Query: 191 NAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEA 246
           +        E V        G +  +LY G G F+ VLAR      RV  V+ A  S  A
Sbjct: 226 HRDAARRYTELVAQWVGEAPGAVAWDLYGGAGLFAAVLARAVGPTGRVFTVDSAGASSRA 285

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A  ++    + +V+++   + +    +                   +   VDPPR+G   
Sbjct: 286 AAASLK--DLRHVEVLSGPTGKLLAGLPSA----------------QVAVVDPPRAGAGR 327

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           A +  +     +++I C   +  RD+ + +   + +  + +FD FP T H+EC  LL R
Sbjct: 328 AVIAALARTERVIHIGCEAAAFSRDVGLYVQQGYAVREIRVFDAFPLTHHVECLALLER 386


>gi|42523529|ref|NP_968909.1| RNA methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|51316635|sp|Q6MLF5|Y2056_BDEBA RecName: Full=Uncharacterized RNA methyltransferase Bd2056
 gi|39575735|emb|CAE79902.1| hypothetical RNA methyltransferase [Bdellovibrio bacteriovorus
           HD100]
          Length = 388

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 142/382 (37%), Gaps = 34/382 (8%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAFQ---VPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
            G   I   Y  Q   K++ L  +  A +      L++  + P H R R +F +     D
Sbjct: 25  GGCQHIGVPYGHQAQNKINDLSGLFTAAEVAFPKPLKVLSAGPAHLRDRLDFSL----QD 80

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTSQSD 115
               ++     E + I+     S  +   + E   +         R ++          D
Sbjct: 81  GRLGLYRTDRHEILDIEVCAQLSPALQGWLSEFRKIQWPFKRGSFRLRVGPEGQRGLWID 140

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
            A V +    LLD+     +++ +  +   + +   +   N+ K+     +V  +  +  
Sbjct: 141 LANVDI--KTLLDEQNILRSLQQQAFVEIGQRRKVPVWTGNEFKLRDPEHHVWFQSWMND 198

Query: 176 RTLIYRQIENSFTQP----NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
             +       SFTQP    N  I   + +WV          L+E   G GN +       
Sbjct: 199 IPVNLYCQVASFTQPSHTANKIICDVIYDWVKRY---KAQRLIEFGSGIGNLTFPALAGA 255

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
           + VLA EI + S++    ++      N     MS  +    + R     +L        +
Sbjct: 256 ESVLACEIDELSLQGLERSL------NELPASMSHLKDRVTIYRRDFQKKLT---QDFSQ 306

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPH-----ILYISCNPDSLCRDLSILST-THTIERLA 345
           F  +  +PPRSGL      +    P       +Y+SC P+S+ RDL  L    + ++ + 
Sbjct: 307 FDGVLANPPRSGLMGFLNPLKSLAPEQRPEFFIYMSCYPESMARDLVTLQECGYRMQEVY 366

Query: 346 LFDQFPYTRHMECGVLLVRKPS 367
           + DQFP T H E   LL R+ +
Sbjct: 367 IVDQFPQTDHYEVLGLLQREKA 388


>gi|46447632|ref|YP_008997.1| putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|51316627|sp|Q6M9M7|Y1998_PARUW RecName: Full=Uncharacterized RNA methyltransferase pc1998
 gi|46401273|emb|CAF24722.1| putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 383

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 130/368 (35%), Gaps = 42/368 (11%)

Query: 22  RQMMLAFQ-VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGS 80
           R+++  F+   N  + +     +R RA+  +     +    +F + + E + I + +   
Sbjct: 33  REVIENFKETLNPILHQGTLTGWRCRAKLAVRGTKQNPIIGLFKKGSHEALNIPFCLVHH 92

Query: 81  LLINA---LMIEMMATIRLEPL--------LRAKLFQIDYLTSQSDQAIVTLI--YHRLL 127
             IN    ++   M   +L P         LR   F ++  + +     V     +    
Sbjct: 93  PRINQAVTMIQNWMERHQLNPYQEHSQAGDLRYLQFVVERASGKVQIVFVLNFKDFSSPE 152

Query: 128 DDAWRECAIRLRDALHARKY-QIQLIGRANKTKIC----LDRDYVDERLTVAGRTLIYRQ 182
              WR+  + L        +  I +    + T        ++ + +  L  +   +    
Sbjct: 153 SQIWRKLLLELAQETTNAFWHSIWVNFNPHATNTIFTDKWEKVWGEPYLWESFDGVKICF 212

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
             ++F Q N  +   +L+ V +  +  +  ++E + G G   L +A     +   EI   
Sbjct: 213 QPSNFAQANLDLFEKLLKKVKSWVRE-KAKVVEFFAGVGTIGLSVAAKCSWIKCEEINPH 271

Query: 243 SVEAARYNIAANHVN---NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           S E   Y            +     S+ E    ++                   T+ VDP
Sbjct: 272 SKECFYYAKQQLSSEISQKIMFYTGSADENLNLLQGA----------------DTVIVDP 315

Query: 300 PRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHM 356
           PR GL    +  +   +   ++Y+SC  DS  ++   L S    +++L  +  FP + H+
Sbjct: 316 PRKGLSRKFIEGLTQSSVDQLIYVSCGWDSFKKNKETLISQGWNLKKLEGYSLFPGSEHI 375

Query: 357 ECGVLLVR 364
           E   L  R
Sbjct: 376 ELLTLFER 383


>gi|308506397|ref|XP_003115381.1| hypothetical protein CRE_18824 [Caenorhabditis remanei]
 gi|308255916|gb|EFO99868.1| hypothetical protein CRE_18824 [Caenorhabditis remanei]
          Length = 636

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 23/170 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDR-----VLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSS 266
           LL++ CG G     L ++         + +E+   +VE A+ N   N +    K +   +
Sbjct: 472 LLDICCGTGTIGQCLLKNIQSSQKVFCIGIEMIVEAVEDAKQNAKQNKMEKCCKYIAGKA 531

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISC 323
           ++  ++M+        K+ D+   R   +  DPPR+G+ +  +   +       ++++SC
Sbjct: 532 EDTFRSMKYHLP----KEFDLRKSRVVGVL-DPPRAGMHEKVILACREMETMRRLIFVSC 586

Query: 324 NPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLVR 364
           +P+S   ++  L             +I R+   D FP T HME  + L R
Sbjct: 587 DPNSAINNIVNLCRPESRKYNGAAFSITRVQPVDMFPQTNHMEWIIQLDR 636



 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 69/247 (27%), Gaps = 49/247 (19%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----------------VPNLQIFRSEP--IHYRM 45
           L   +YE+QL  K      +M                        L+     P    YR 
Sbjct: 139 LAEMEYEKQLELKQQNSTNVMDKLHGQLQRNKIINIGKQGEFRKRLETILPSPKTTGYRN 198

Query: 46  RAEFHIWHDGDDLY-----HIMFDQQTKERMR---IDYFMPGSLLINALMIEMMATIRLE 97
           + EF I HD +           F +     +    +D   P  + I     + +    LE
Sbjct: 199 KCEFTIGHDLNRDICIGFVGGRFSENRHFVIPPVNVDIVTPQMMAILKDTHDYVKETGLE 258

Query: 98  PL----LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD-ALHARKYQ---- 148
           P      +     +       D  ++  ++     +   E   ++ D  L+   +     
Sbjct: 259 PFDEFDRKGFWRMLTVREFGGDVMLIFTVFPLESKEKTEEIQKQIADRFLNFETFTEKSY 318

Query: 149 ------IQLIGRANKT---KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
                  Q +   + T   K+     Y+ E L        +R    +F Q N+     + 
Sbjct: 319 RVCSIYWQEMVHISDTPNFKLIGGTPYIYESLL----DCRFRVSPPAFFQTNSQGASVLY 374

Query: 200 EWVLAAT 206
             +    
Sbjct: 375 STIGELC 381


>gi|183982039|ref|YP_001850330.1| SAM-dependent methyltransferase [Mycobacterium marinum M]
 gi|183175365|gb|ACC40475.1| SAM-dependent methyltransferase [Mycobacterium marinum M]
          Length = 401

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/334 (19%), Positives = 112/334 (33%), Gaps = 67/334 (20%)

Query: 40  PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
           P  +R R    +  D    +H     +    +R      G                    
Sbjct: 126 PTGWRTRVRLEVGADHCVGFHRYHSNELVTDLRCGQLPDG-------------------- 165

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT- 158
                  +D L  +S          +    A  +  + L D     ++ +  + R  +T 
Sbjct: 166 ------MLDGLAQRS---------AKAGWPAGAQLHVALGDD--GARHVVLTVRRGRRTD 208

Query: 159 -KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLEL 216
            K+      V +R+        +R    +F Q +          V    +   G    +L
Sbjct: 209 AKVVEGDPRVLQRVGER----SWRIPATAFWQSHRDAAKVYSGLVADWAQPGAGMTAWDL 264

Query: 217 YCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           Y G G F+ VL        RVL+V+ A+ +  AAR   A   +  V++V  S +    A 
Sbjct: 265 YGGAGVFAAVLGDAVGESGRVLSVDTARAASAAARV--ALADLPQVEVVTDSVRRVLAA- 321

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRD 331
                                  +DPPRSG     + ++       +++I C   S  RD
Sbjct: 322 --------------QDGGADIAVLDPPRSGAGREVIDLLADAGVRRVVHIGCEAASFARD 367

Query: 332 LSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           L +     + ++ + +FD FP T H+EC  LL R
Sbjct: 368 LGLYRGHGYGVDAIKVFDAFPLTHHVECVALLTR 401


>gi|255578870|ref|XP_002530289.1| RNA m5u methyltransferase, putative [Ricinus communis]
 gi|223530187|gb|EEF32096.1| RNA m5u methyltransferase, putative [Ricinus communis]
          Length = 863

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/376 (14%), Positives = 106/376 (28%), Gaps = 87/376 (23%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLA------------FQVPN--------------LQIFRS 38
           L    YE QL  K + + QM+                +P               L+    
Sbjct: 310 LAHMSYEDQLEHKKNSIMQMLKKLTRNARKACPNGVSLPEWVLKSREIGGLACSLEGILE 369

Query: 39  EPI--HYRMRAEFHIWH--DGDDLYHIMFDQQTKERMRIDY---FMPGSLLINALMIEMM 91
            P+   YR + EF + +   G  +   M          ++        S + +   +   
Sbjct: 370 SPLVNGYRNKCEFSVGYSLQGKPIVGFMLGNFRDGVTAVEEPMDCPNVSSIASKYALIFQ 429

Query: 92  ATIRLEPL---------------------LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
             ++   L                     L  K   I    + S+  ++  +     DD 
Sbjct: 430 EFLQESGLPIWNRFKNTGFWRQLTVREGRLPEKDADIKGDVNMSEIMLIVQVCLAGFDDE 489

Query: 131 WRECAIR------------------LRDALHARKYQIQLIGRANKTKICL---------- 162
                +                   L+  +      I  +  A+     L          
Sbjct: 490 LINSELWRLAHAFTTGAAANSPPLPLKVLVLQDHQGISNVAPADAPLRILPLPNVESSSE 549

Query: 163 ---DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
               ++ V+ R+      L +     +F Q N      +              LL ++ C
Sbjct: 550 AEATKNVVEARIHDHINNLRFSISPTAFFQVNTLAAERLYSLAGDWAGLGPDTLLFDICC 609

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G G   L LA     V+ +E+   +V  A  N   N + N + +   ++    ++ +E  
Sbjct: 610 GTGTIGLTLAHRVGMVVGIEMNASAVSDAHRNAEINGIRNCRFICAKAESVMASLLKEY- 668

Query: 279 FNRLKDIDIHSYRFKT 294
            N  +  D  SY  +T
Sbjct: 669 LNEPQKQDEVSYAGET 684



 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 39/117 (33%)

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILS------- 336
           +  ++     VDPPR+GL    +  ++ +     ++YISCNP++L  +   L        
Sbjct: 747 VPQFKNVVAIVDPPRNGLHPTVIKALRTHSHLRRLVYISCNPETLLANAIELCTPSPDKI 806

Query: 337 -----------------------------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                                              +    D FP+T H E  +LL R
Sbjct: 807 EKGKKNNRGWRNMSSAGLARHRAQSMPISEPFRPVKAMAVDLFPHTTHCEMVMLLER 863


>gi|300870044|ref|YP_003784915.1| TrmA-family RNA methyltransferase [Brachyspira pilosicoli 95/1000]
 gi|300687743|gb|ADK30414.1| RNA methyltransferase (TrmA-family) [Brachyspira pilosicoli
           95/1000]
          Length = 390

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 132/371 (35%), Gaps = 63/371 (16%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-LQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
                  +Y +QL  K   +   +   +  N + I +S   HYR+R          +   
Sbjct: 72  GCVFNHIEYNKQLEIKKSIVLNSIRNIEYKNKINIIKSPNEHYRLRVNM----IAQNGSI 127

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
             +   T E + ID  +     +   +   +    +   + A     D   S +D     
Sbjct: 128 GFYKFNTNEFVNIDECIILKEKLFCKIKNFVNRSNITGNIYAIESNNDKTLSFAD----I 183

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           +  ++ +D ++ +     +          +            +  +    L+        
Sbjct: 184 IKQNKNIDTSYFDGITIKQKKKIKIYGIDKTN---------YNTYFGVVPLSH------- 227

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD------RV 234
                SF Q N  +     +  +        +++ELY G+G FS+ +    +      ++
Sbjct: 228 ----KSFFQSNHYLLDEFQKSAVKYFNEYDKNIVELYAGSGFFSVAIKNKLESLNIDYKL 283

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           ++ EI+  +V+ A+            I++  + E  + +                Y   +
Sbjct: 284 ISSEISSDAVKIAK-----------DIIKEDASETLKKIN---------------YNVDS 317

Query: 295 IFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           +FVDPPR GLD   +   +      I+YISCNP +  RD+++L   + +  L + D FP 
Sbjct: 318 LFVDPPREGLDKKVIENIIRIKPKKIIYISCNPMTFARDINLLKEYYQLIDLNIIDMFPD 377

Query: 353 TRHMECGVLLV 363
           T H+E    L 
Sbjct: 378 TYHIELISCLE 388


>gi|242018101|ref|XP_002429519.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
           corporis]
 gi|212514467|gb|EEB16781.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
           corporis]
          Length = 475

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/427 (15%), Positives = 133/427 (31%), Gaps = 79/427 (18%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ--------------------------VPNLQIFRSEPIH 42
            YE+Q+ +K    R+ +                                +  +    P  
Sbjct: 34  PYEEQIKQKTQTARKYIAKLCNLILTRNPNLDGWIQRQKEENKGFLCKVDPMVRTCNPNG 93

Query: 43  YRMRAEFHIWHDGDDLYHIMFDQQTKERM-------RIDYFMPGSLLINALMIEMMATIR 95
           Y+ + EF +  D      ++  +  K  +       R+        L+  L  + +    
Sbjct: 94  YKAKCEFRVGFDEVSNERVVGFKCAKSGVLSVCPGDRMIQLPHQMKLVVKLFEDYIKQSP 153

Query: 96  LEPLL----RAKLFQIDYLTSQSDQAIVTLIYHRL-------------LDDAWRECAIRL 138
           L P +          +    S + + ++ +  +               L + +     R+
Sbjct: 154 LPPYVVETKSGFWHHLIVRVSMAGEVMLLIDMNSKNLTLQQLQYVKSDLSNFFFNGDGRV 213

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
            + + +  Y   + G+ ++    L+     +RL        +     +    NA      
Sbjct: 214 AN-VQSLYYHPHIEGQTDQVPSALELLGGMQRLIEPVMGTNFHIGPFTHFLTNACSAQTF 272

Query: 199 LEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
            + +      G    ++++  G G   L LA+    V A+E+ +  +         N++ 
Sbjct: 273 YQAISDLVQPGPNVTIIDICAGIGAIGLTLAKKCKEVYAIEMLEQHIADGVLTAQMNNIT 332

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316
           N   +   ++E    + +  E  R K+I           +DPP+ G     V  V+  P 
Sbjct: 333 NFSFLHGIAEEQLGDLLKTLE-GRNKEI--------VCILDPPKLGAHKRIVDQVRMSPS 383

Query: 317 --HILYISCN----PDSLCRD--LSILSTT--------HTIERLALFDQFPYTRHMECGV 360
               +Y+ CN    P  L  D   S L               R+   D  P+T H +  V
Sbjct: 384 VKRFVYV-CNNHKSPVRLFLDFCASPLERGTYNFTGLPFVPVRIIPIDLAPHTPHSQLLV 442

Query: 361 LLVRKPS 367
           L  R  S
Sbjct: 443 LFERCSS 449


>gi|302206330|gb|ADL10672.1| Putative RNA methyltransferase, TrmA family [Corynebacterium
           pseudotuberculosis C231]
          Length = 439

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 128/384 (33%), Gaps = 74/384 (19%)

Query: 11  EQQLAEKVDRLRQMMLAFQ----VPNLQI-FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           E Q   K + L+  +        +P + +     P+ +R R    +             +
Sbjct: 106 EAQ--FKANILQDQLQRLGKISDIPTIDVQTIGAPVGWRTRMRLGV---DALGNAGFRRR 160

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            +     I    P +  +  L         L+ ++ A+    ++  +   Q +V      
Sbjct: 161 NSH---DIVTHYPCTQAVPGL---------LDGIVEAEGASTNFTFTPGSQIVVV----- 203

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +DDA +   +  R     ++         +  KI      V + +        +     
Sbjct: 204 -MDDAGKRSVVETRKPSRGQR-------AESIQKILEGEGNVTQVV----DNTEFSIATT 251

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL------------LELYCGNGNFSLVLARHFDR 233
           +F Q +     H    +      +  +L             +LY G G F   +      
Sbjct: 252 AFWQAHKASAQHYASTIQRWIASMVQELSQDDCANSRIVGWDLYGGAGAFVPAILNGLGD 311

Query: 234 ---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V +VE++  + +A +   A  +    K V   S         ER    L        
Sbjct: 312 HSVVHSVELSPEAAKAGKQ--ALRNAYAAKRVVFHSALV------ERSIPGLP------- 356

Query: 291 RFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST-THTIERLALF 347
           +   + +DPPR G   A +    + +   +++I C+P +  RD+S      + + RL L 
Sbjct: 357 KPAIVVLDPPRVGAGQAVIDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLV 416

Query: 348 DQFPYTRHMECGVLLVRKPSGWHQ 371
           D FP T H E   LLVR  S  HQ
Sbjct: 417 DAFPGTHHFETLGLLVRTKS--HQ 438


>gi|302330887|gb|ADL21081.1| Putative RNA methyltransferase, TrmA family [Corynebacterium
           pseudotuberculosis 1002]
          Length = 439

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 128/384 (33%), Gaps = 74/384 (19%)

Query: 11  EQQLAEKVDRLRQMMLAFQ----VPNLQI-FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           E Q   K + L+  +        +P + +     P+ +R R    +             +
Sbjct: 106 EAQ--FKANILQDQLQRLGKISDIPTIDVQTIGAPVGWRTRMRLGV---DALGNAGFRRR 160

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            +     I    P +  +  L         L+ ++ A+    ++  +   Q +V      
Sbjct: 161 NSH---DIVTHYPCTQAVPGL---------LDGIVEAEGASTNFTFTPGSQIVVV----- 203

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +DDA +   +  R     ++         +  KI      V + +        +     
Sbjct: 204 -MDDAGKRSVVETRKPSRGQR-------AESIQKILEGEGNVTQVV----DNTEFSIATT 251

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL------------LELYCGNGNFSLVLARHFDR 233
           +F Q +     H    +      +  +L             +LY G G F   +      
Sbjct: 252 AFWQAHKASAQHYASTIQRWIASMVQELSQDDCANSRIVGWDLYGGAGAFVPAILNGLGD 311

Query: 234 ---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V +VE++  + +A +   A  +    K V   S         ER    L        
Sbjct: 312 HSVVHSVELSPEAAKAGKQ--ALRNAYAAKRVVFHSALV------ERSIPGLP------- 356

Query: 291 RFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST-THTIERLALF 347
           +   + +DPPR G   A +    + +   +++I C+P +  RD+S      + + RL L 
Sbjct: 357 KPAIVVLDPPRVGAGQAVIDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLV 416

Query: 348 DQFPYTRHMECGVLLVRKPSGWHQ 371
           D FP T H E   LLVR  S  HQ
Sbjct: 417 DAFPGTHHFETLGLLVRTKS--HQ 438


>gi|289807568|ref|ZP_06538197.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 91

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/91 (70%), Positives = 78/91 (85%)

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EIAKPSV AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+  Y+ +TIFV
Sbjct: 1   EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKRYQCETIFV 60

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSL 328
           DPPRSGLD  T  MVQAYP ILYISCNP++L
Sbjct: 61  DPPRSGLDSETEKMVQAYPRILYISCNPETL 91


>gi|218461861|ref|ZP_03501952.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli Kim
           5]
          Length = 222

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 78/184 (42%), Gaps = 16/184 (8%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
               F Q        M E VLA   G    +++L+ G G FSL LA+   RV AVE    
Sbjct: 53  PAGGFAQATKPAEEAMAELVLA-HAGKAKRIVDLFAGAGTFSLRLAQ-IGRVHAVEAEAA 110

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++ A     AA     +K V +  ++  +     +EF            F  +  DPPR+
Sbjct: 111 ALAALDQ--AARKTQGLKPVSVEKRDLFRRPLMTQEFK----------PFDMVVFDPPRA 158

Query: 303 GLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGV 360
           G +     + +     I  +SCNP +L RDL IL    + I  +   DQF ++ H+E   
Sbjct: 159 GAEFQCKELARSGVKKIAAVSCNPLTLARDLQILVEGGYRITGVTPIDQFLWSSHVEVVA 218

Query: 361 LLVR 364
            L +
Sbjct: 219 TLEK 222


>gi|224106744|ref|XP_002314271.1| predicted protein [Populus trichocarpa]
 gi|222850679|gb|EEE88226.1| predicted protein [Populus trichocarpa]
          Length = 830

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 98/360 (27%), Gaps = 87/360 (24%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVP--------------------------NLQIFRS 38
           L    Y+ QL  K + + QM+                                 L+    
Sbjct: 277 LAHMPYDDQLEHKKNSIMQMLKKLTRNARKACPNGVSLPEWILKSREIGGLPCELEGILE 336

Query: 39  EPIH--YRMRAEFHIWH--DGDDLYHIMFDQQTKERMRIDY---FMPGS----------- 80
            P+   YR + EF + +   G      M     +    ++        S           
Sbjct: 337 SPLRNGYRNKCEFSVGYSLQGKPTVGFMLGNFREGVTAVEEPLGCPNVSSVACKYASIFQ 396

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ-----------SDQAIVTLIYHRLLDD 129
             +    + +    +     R    +   L  +           S+  ++  +     DD
Sbjct: 397 EFLQQSGLPIWNRFKNTGFWRQLTVREGRLPRKAADIAIPEAHISEVMLIVQVSSVGFDD 456

Query: 130 AWRECAIR------------------LRDALHARKYQIQLIGRAN---KTKICLDRDYVD 168
                 +R                  L   +      +  +  A+   +T +  + +   
Sbjct: 457 DMITNELRGLAHAFTTGAAGSAPPLPLTALVIQDHQGLSNVAPADAPLRTLLLPNANGGS 516

Query: 169 E----------RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV-LAATKGIQGDLLELY 217
           E          R+      L +     +F Q N      +       A  G    L ++ 
Sbjct: 517 EVQATSNVAEARIHDYISNLRFSISPTAFFQVNTLAAEKLYSLAGDWAGLGPDSLLFDIC 576

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G   L LA     V+ +E+   +V  A  N   N + N + V   +++   ++ +E 
Sbjct: 577 CGTGTIGLTLADRVGMVVGIEMNASAVSDAHRNAEINGIKNCRFVCAKAEDVIGSLLKEY 636



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 43/176 (24%)

Query: 232 DRVLAVEIAKPSVEAARYNIA--ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
             +  VE+    ++    +    ++ + N +     S+   Q ++ + + +        S
Sbjct: 655 KEIAMVEVNNAPMDDVLDSSKNPSHDLGNGEGASGESENDGQEIQSQLQKSCTSKEGSSS 714

Query: 290 ---YRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILS------- 336
              ++     VDPPR GL    + +++ +  +   +YISCNP++L  +   L        
Sbjct: 715 MLHFKNVVAIVDPPRGGLHPIVIKVLRTHSRVRRLVYISCNPETLVANAIELCTPSPEKV 774

Query: 337 ----------------------------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                                             +    D FP+T H E  +LL R
Sbjct: 775 EKGNRNRAWRKMSSAGLARHRVKSMPVSEPFRPVKSVAVDLFPHTSHCEMVMLLER 830


>gi|169630075|ref|YP_001703724.1| hypothetical protein MAB_2992c [Mycobacterium abscessus ATCC 19977]
 gi|169242042|emb|CAM63070.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 388

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 117/362 (32%), Gaps = 81/362 (22%)

Query: 15  AEKVDRLRQMMLAFQVPNLQ-----IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
             K D + Q +        Q     +   +P  +R R    +   G   +H     +   
Sbjct: 96  ELKGDVVSQQLARLGKYEWQGVAQPLGAGDPTGWRTRVRLDVNALGQPGFHRYHSDELVT 155

Query: 70  RMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD 129
            +R    +PG          ++  +    L                        H ++DD
Sbjct: 156 DLRCAQVVPG----------LLDGLDQPELGSEG------------------PLHAVMDD 187

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
             R   +R    +      +Q +G         DR ++                  +F Q
Sbjct: 188 QGRRHVLRGSTIVEGEDVAVQKVG---------DRHWL--------------VPVTAFWQ 224

Query: 190 PNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVE 245
            +          V    +   G    +LY G G F+  L     R   V++V+ ++P+  
Sbjct: 225 AHRDAAGTYSRLVSDWAELEPGMSAWDLYGGVGVFAAALGEAVGRTGHVVSVDTSRPAFR 284

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           +A+   A   +  V ++  S +   + +                       +DPPR+G  
Sbjct: 285 SAKS--ALGDLRQVTMICGSVRHAIRDLGEA----------------DVAVLDPPRAGAG 326

Query: 306 DATVGMVQA--YPHILYISCNPDSLCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLL 362
              +G V A     +++I C   +  RD+ + L   + +  L +FD FP T H+E   LL
Sbjct: 327 REVIGKVAAANVSRVIHIGCEAAAFARDVGLYLERGYRVRELRVFDAFPLTHHIESFALL 386

Query: 363 VR 364
            R
Sbjct: 387 TR 388


>gi|225435301|ref|XP_002282314.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 872

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/382 (13%), Positives = 102/382 (26%), Gaps = 88/382 (23%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLA------------FQVPN--------------LQIFRS 38
           L    Y  QL  K + L Q +                +P                +    
Sbjct: 245 LAHLTYTDQLEHKKNSLMQTLKKLTRNARKACPNGVSLPEWILKSREIGGLPCKFEGILE 304

Query: 39  EPI--HYRMRAEFHIWH--DGDDLYHIMFDQQTKERMRIDY---FMPGSLLINALMIEMM 91
            P+   YR + EF + +   G      M     +    ++        S++         
Sbjct: 305 SPLVNGYRNKCEFSVGYSLQGKPTVGFMLGNFREGITAVEEPADCPNVSMIARRYATIFQ 364

Query: 92  ATIRLEPL-----------------------LRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
             ++   L                        +A   +I   +      +V +    + D
Sbjct: 365 EFLQHSGLPLWNRFNNTGFWRQLTVREGRKPGKAAEAKISEPSISEVLVMVQVCSKGIDD 424

Query: 129 DAWRECAIRLRDA------------LHARKYQ-----------------IQLIGRANKTK 159
           +       RL  A            L A   Q                 + +    + + 
Sbjct: 425 EILNGEFERLAQAFTMGATASSPLPLTALVVQDHKGISNVASADAPLRPLPIPKEGSDSG 484

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYC 218
                  V+ R+      L +     +F Q N      +              LL ++ C
Sbjct: 485 PDAGGQIVEARIHDYISNLRFCISPTAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDVCC 544

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER- 277
           G G   L LA     V+ +E+   +V  A+ N   N + N + V   +++   ++ +E  
Sbjct: 545 GTGTIGLTLAHRVGMVVGIEMNASAVSDAQRNAELNGIKNCRFVCAKAEDVMGSLLKEYL 604

Query: 278 -EFNRLKDIDIHSYRFKTIFVD 298
               R  ++   S     +  +
Sbjct: 605 SVPQRQNEVPDFSQSDDKVISN 626



 Score = 66.6 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 39/102 (38%)

Query: 302 SGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILS---------------------- 336
            G+++  +  ++ +     ++YISCNP+SL  +   L                       
Sbjct: 771 DGIEEKVIKALRTHACLRRLVYISCNPESLVANAIELCTPSADKTEKGNKNNRGWRNMSS 830

Query: 337 --------------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                               +    D FP+T H E  +LL R
Sbjct: 831 AGLARHRAKSMPNSEPFQPVKAMAVDLFPHTPHCEMVMLLER 872


>gi|332202891|gb|EGJ16959.1| 23S rRNA (Uracil-5-)-methyltransferase RumA domain protein
           [Streptococcus pneumoniae GA47901]
          Length = 107

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 15/114 (13%)

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + N   V  +++   +   +E              +   I VDPPR GL ++ +    
Sbjct: 2   NKITNAHYVCDTAENAMKKWLKE------------GIQPTVILVDPPRKGLTESFIKASA 49

Query: 314 --AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
                 I YISCN  ++ RD+ +     + ++++   D FP T H+E   LL +
Sbjct: 50  QTGADRIAYISCNVATMARDIKLYQELGYELKKVQPVDLFPQTHHVETVALLSK 103


>gi|308276572|gb|ADO26471.1| Putative RNA methyltransferase, TrmA family [Corynebacterium
           pseudotuberculosis I19]
          Length = 438

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 124/384 (32%), Gaps = 75/384 (19%)

Query: 11  EQQLAEKVDRLRQMMLAFQ----VPNLQI-FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           E Q   K + L+  +        +P + +     P+ +R R    +             +
Sbjct: 106 EAQ--FKANILQDQLQRLGKISDIPTIDVQTIGAPVGWRTRMRLGV---DALGNAGFRRR 160

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + + +               +  ++  I  E          ++  +   Q +V      
Sbjct: 161 NSHDIVTHYPCTQA-------VPGLLDGIEAEGA------STNFTFTPGSQIVVV----- 202

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +DDA +   +  R     ++         +  KI      V + +        +     
Sbjct: 203 -MDDAGKRSVVETRKPSRGQR-------AESIQKILEGEGNVTQVV----DNTEFSIATT 250

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL------------LELYCGNGNFSLVLARHFDR 233
           +F Q +     H    +      +  +L             +LY G G F   +      
Sbjct: 251 AFWQAHKASAQHYASTIQRWIASMVQELSQDDCANSRIVGWDLYGGAGAFVPAILNGLGD 310

Query: 234 ---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V +VE++  + +A +   A  +    K V   S         ER    L        
Sbjct: 311 HSVVHSVELSPEAAKAGKQ--ALRNAYAAKRVVFHSALV------ERSIPGLP------- 355

Query: 291 RFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST-THTIERLALF 347
           +   + +DPPR G   A +    + +   +++I C+P +  RD+S      + + RL L 
Sbjct: 356 KPAIVVLDPPRVGAGQAVIDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLV 415

Query: 348 DQFPYTRHMECGVLLVRKPSGWHQ 371
           D FP T H E   LLVR  S  HQ
Sbjct: 416 DAFPGTHHFETLGLLVRTKS--HQ 437


>gi|260901362|ref|ZP_05909757.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
          AQ4037]
 gi|308108437|gb|EFO45977.1| tRNA (uracil-5-)-methyltransferase [Vibrio parahaemolyticus
          AQ4037]
          Length = 98

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 64/91 (70%)

Query: 7  IDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
            +Y++QLAEKV+RL  M   + VP L++F S   HYRMRAEF +WH+G+DLY+IMF+Q+
Sbjct: 8  PQRYQEQLAEKVERLTDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67

Query: 67 TKERMRIDYFMPGSLLINALMIEMMATIRLE 97
          T+E+ R+D F   S LIN LM  ++  ++  
Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVEAMKDN 98


>gi|38346207|emb|CAD39345.2| OSJNBa0094O15.14 [Oryza sativa Japonica Group]
 gi|222628241|gb|EEE60373.1| hypothetical protein OsJ_13507 [Oryza sativa Japonica Group]
          Length = 865

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 112/364 (30%), Gaps = 81/364 (22%)

Query: 5   LLIDQYEQQLAEKVDRLRQMML----------AFQVPNLQ-IFRSEPIH----------- 42
           L    Y  QL  K + + Q++              +P    +F+S+ I            
Sbjct: 264 LAHMSYNDQLEHKKNSVAQILKRLTRNARKACPTGIPLPDWVFKSKEIGGLPCKLEGILE 323

Query: 43  ------YRMRAEFHIWH--DGDDLYHIMFDQQTKERMRIDY---FMPGSLLINALMIEMM 91
                 YR + EF +    +G      M     +    ++        S +     +   
Sbjct: 324 SPVINGYRNKCEFSVGFSLEGKKTVGFMLGNFREGVTAVEEPVDCPNVSEISCKYALMFQ 383

Query: 92  ATIR---------------------LEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
             ++                      E   +A+    +     S+  ++  +    +DDA
Sbjct: 384 DFLQSSSLPVWNRVDNCGFWRQFTVREGRCQAQAVAQNAENQISEVMLIVQVCSTGVDDA 443

Query: 131 -WRECAIRLRDALHARKYQIQ-------LIGRANKT-----------------KICLDRD 165
             ++   +L  AL               ++ + +K                  K+     
Sbjct: 444 VMKDEFDKLTVALQQGAATCSPPLPLTTIVVQDHKGISNAAPADCPLIPLLVPKVDQSEG 503

Query: 166 YVDE-RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNF 223
            VD+ R+      L +     +F Q N      +            G LL ++ CG G  
Sbjct: 504 TVDKTRIHDHIGNLWFSISPTAFFQVNTLAAERLYTLAGDWANLNSGTLLFDVCCGTGTI 563

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L LA     V+ +E+ + +V  A  N   N V+N + V   +++   ++  E   +  +
Sbjct: 564 GLTLAHRVGMVVGIEMNESAVSDAERNALINGVSNCRFVCGKAEDVMGSLLTEYLGSPQQ 623

Query: 284 DIDI 287
           DI +
Sbjct: 624 DIPV 627



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 40/123 (32%), Gaps = 38/123 (30%)

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILS 336
           N +       +      VDPPR GL    +  ++ +P I   +YISCNPDSL  +   L 
Sbjct: 743 NDVTAATACQFEDIVAIVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPDSLVANAIELC 802

Query: 337 -----------------------------------TTHTIERLALFDQFPYTRHMECGVL 361
                                                   +R    D FP+T H E  +L
Sbjct: 803 TPSSEKQEKNKGNRGWRTMSSAGLARQRTKSMPNSEPFVPKRAMAVDLFPHTSHCEMVML 862

Query: 362 LVR 364
             R
Sbjct: 863 FER 865


>gi|213964431|ref|ZP_03392631.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
 gi|213952624|gb|EEB64006.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
          Length = 421

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 121/373 (32%), Gaps = 56/373 (15%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ------VPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYHI 61
           +Y  +L  K D L   +          +P + +    P   +R R    +   G      
Sbjct: 85  EYAARL--KADVLTDCLRRLGRFTADELPAIDVLPLAPTSRWRSRVRLGVDSQG---RAG 139

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
           +   ++ E + +   +         +  ++A       +          + +S    +  
Sbjct: 140 LRRSRSHELVIVSECV-------QTVPNLIAGFSTAGTIPVAKPARGRGSKKSQTGEL-- 190

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
             H  +D      A+ +  +           GR  K  +          +      + + 
Sbjct: 191 --HVAMDTEGNRSAVYVFGS-----------GRNRKQTLIEGEPTTQHTVH----GITFD 233

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDR---VLAV 237
                F Q +          ++    G       +LY G G  S  L +  D    +L+V
Sbjct: 234 VPTTGFWQAHCHAPEFYGSRIIDLLAGQSFSCGWDLYGGAGVLSAALRKLVDEEGSILSV 293

Query: 238 EIAKPSVEAARYNIAAN----HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           E    +  A R    A     +      VR  + + T+ +RRE       + DI      
Sbjct: 294 EGFAAAATAGRKAFTAADHSGNATPAAPVRFVTGDVTKVVRREVANEETPNPDI------ 347

Query: 294 TIFVDPPRSGLDDATVGMV-QAYPHIL-YISCNPDSLCRDLSILST-THTIERLALFDQF 350
            + +DPPRSG     +  + +A P ++ +  C+P +  RD    +   + ++ L + D F
Sbjct: 348 -VVLDPPRSGAGKDAIAAIAEAKPRVVVHFGCDPATFARDARYWTDYGYVLKHLEVVDAF 406

Query: 351 PYTRHMECGVLLV 363
             T H E   +L 
Sbjct: 407 GLTHHFETIAVLE 419


>gi|225021274|ref|ZP_03710466.1| hypothetical protein CORMATOL_01286 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946007|gb|EEG27216.1| hypothetical protein CORMATOL_01286 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 410

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 110/368 (29%), Gaps = 66/368 (17%)

Query: 11  EQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMFDQ 65
           E +L  K   L   +        +P +      P   +R R    +   G          
Sbjct: 93  EAELELKTTILTGQLTKLGKLAALPPITAQELPPTTGWRSRIRLGVDRAG---RAGFRKA 149

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + + +     +         M  ++       +     ++     +   + I       
Sbjct: 150 HSHDLVTDHRCI-------QPMPGLLGDGPDSIVGADSKYRF----TPGAEVIAV----- 193

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDD      + +R     R+ +I        TK+      V +++        +     
Sbjct: 194 -LDDDGTRHVVEVRKPARGRRSEII-------TKVISGTGDVVQKVG----EYTFTLPPT 241

Query: 186 SFTQPNAGINVH----MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           +F Q +          + +WV     G++    +LY G G     L       L      
Sbjct: 242 AFWQAHHQALSTYSDLITQWVTGGQYGVEPVGWDLYGGVGALVPAL----HHALGNNSHI 297

Query: 242 PSVEAARYNIAANHV---NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            SVE+AR    +  V   ++V             +                 +   + +D
Sbjct: 298 HSVESARIMAISGQVTFGDDVHFHIGLVGNLVDTLP----------------QPDVVVLD 341

Query: 299 PPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRH 355
           PPR G     V  + A     +++I C+P +   D+   S   + +  + + + FP T H
Sbjct: 342 PPRVGAGADVVTRIAARKPQRVIHIGCDPATFATDIRAWSQAGYHLSDIVVVNAFPGTHH 401

Query: 356 MECGVLLV 363
            E   LL 
Sbjct: 402 FETLGLLQ 409


>gi|159037090|ref|YP_001536343.1| deoxyribonuclease [Salinispora arenicola CNS-205]
 gi|157915925|gb|ABV97352.1| deoxyribonuclease/rho motif-related TRAM [Salinispora arenicola
           CNS-205]
          Length = 417

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 116/369 (31%), Gaps = 77/369 (20%)

Query: 11  EQQLAEKVDRLRQMMLAFQV----------PNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           E QL  K   +R+ +                 ++     P+ +R R  + +         
Sbjct: 96  EAQLTWKAGVVREQLTRLGGLTGAELDALGVQVEALPGGPLGWRSRVRYTV---DGAGRA 152

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
            +   ++ E + ID        I  L +                  ++ + S      VT
Sbjct: 153 GLLKHRSYEVVPIDRCRIAHPAIQQLPVLGPVRWPDADA-------VESVASTGGDVTVT 205

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
            +                                   T+     + V E+         +
Sbjct: 206 AV-------------------------------ADGATRPVSGPEQVREQ----AVGRQW 230

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLA 236
           +   ++F Q +      +++ VLA      G+   +LY G G F+  LA       RV  
Sbjct: 231 KLPPSTFWQVHPAAADTLVDAVLAQLDPRPGETAWDLYGGAGLFAAALAGRVGATGRVTL 290

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE A   V AAR N+    +  V IV                          +     + 
Sbjct: 291 VEAAGAGVAAARDNLR--DLPQVDIVAGRVATVLAR-------------GQVTGPVDVVV 335

Query: 297 VDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYT 353
           +DPPRSG   A V  V       + Y++C+P +  RD+   +     +  L  FD FP T
Sbjct: 336 LDPPRSGAGAAVVRAVAGTGARAVAYVACDPAAFARDVRGFAELGWRLAALRGFDLFPMT 395

Query: 354 RHMECGVLL 362
           RH+E   LL
Sbjct: 396 RHVELVGLL 404


>gi|300858618|ref|YP_003783601.1| hypothetical protein cpfrc_01201 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686072|gb|ADK28994.1| hypothetical protein cpfrc_01201 [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 439

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 127/384 (33%), Gaps = 74/384 (19%)

Query: 11  EQQLAEKVDRLRQMMLAFQ----VPNLQI-FRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ 65
           E Q   K + L+  +        +P + +     P+ +R R    +             +
Sbjct: 106 EAQ--FKANILQDQLQRLGKISDIPTIDVQTIGAPVGWRTRMRLGV---DALGNAGFRRR 160

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            +     I    P +  +  L         L+ ++ A+    ++  +   Q +V      
Sbjct: 161 NSH---DIVTHYPCTQAVPGL---------LDGIVEAEGASTNFTFTPGSQIVVV----- 203

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            +DDA +   +  R     ++         +  KI      V + +        +     
Sbjct: 204 -MDDAGKRSVVETRKPSRGQR-------AESIQKILEGEGNVTQVV----DNTEFSIATT 251

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDL------------LELYCGNGNFSLVLARHFDR 233
           +F Q +     H    +      +  +L             +LY G G F   +      
Sbjct: 252 AFWQAHKASAQHYASTIQRWIASMVQELSQDDCANSRIVGWDLYGGAGAFVPAILNGLGD 311

Query: 234 ---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V +VE++  + +  +   A  +    K V   S         ER    L        
Sbjct: 312 HSVVHSVELSPEAAKTGKQ--ALRNAYAAKRVVFHSALV------ERSIPGLP------- 356

Query: 291 RFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILST-THTIERLALF 347
           +   + +DPPR G   A +    + +   +++I C+P +  RD+S      + + RL L 
Sbjct: 357 KPAIVVLDPPRVGAGQAVIDDIALASPEAVIHIGCDPATFARDMSYWQENGYVLARLQLV 416

Query: 348 DQFPYTRHMECGVLLVRKPSGWHQ 371
           D FP T H E   LLVR  S  HQ
Sbjct: 417 DAFPGTHHFETLGLLVRTKS--HQ 438


>gi|301168142|emb|CBW27730.1| putative 23S rRNA (uracil-5-)-methyltransferase [Bacteriovorax
           marinus SJ]
          Length = 376

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 74/364 (20%), Positives = 126/364 (34%), Gaps = 84/364 (23%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMML---AFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
               L  +YE +L  K   +++M      +      I  S+  HYR R + H  +D    
Sbjct: 83  GCHYLHVKYEDELELKTSVIQRMFQYLDQYDQDIPLISASKRFHYRNRIQLH--YDKKLS 140

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
                D    E   +   +  +  I+A + E+                            
Sbjct: 141 KLGFIDSLRNEIREVANCLVANDEISASLKELYTA------------------------- 175

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
                     + W+      ++  H     I+L    +K +I +++              
Sbjct: 176 ----------NNWKNLVRDEKNTGH-----IELYKLGDKVQISINK-------------- 206

Query: 179 IYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
             R  E  FTQ N  +N  ML  +   +         LL+L+ G GN S  L        
Sbjct: 207 --RYSEGGFTQVNEEMNQKMLSHLEEQVRQYIPAGITLLDLFGGAGNLSYNL-------- 256

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
             E  +  V         N+  +    +++       + +E   ++L+     S +   I
Sbjct: 257 --EEYETYVVDGFPPTEMNYRPHQSFEQIN-------LYKEGAIDKLQ--SRCSGKDIAI 305

Query: 296 FVDPPRSGLDDATVGMVQAYPHILY-ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTR 354
            +DPPRSGL +    + +  P  ++ I+C P S  RD+  +    +IE L  FD FP TR
Sbjct: 306 ILDPPRSGLKNINELIQKLKPSFIFMINCEPSSAIRDIKSIEGDFSIENLTTFDLFPGTR 365

Query: 355 HMEC 358
           H E 
Sbjct: 366 HFET 369


>gi|242072140|ref|XP_002446006.1| hypothetical protein SORBIDRAFT_06g000450 [Sorghum bicolor]
 gi|241937189|gb|EES10334.1| hypothetical protein SORBIDRAFT_06g000450 [Sorghum bicolor]
          Length = 862

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 99/356 (27%), Gaps = 83/356 (23%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-------QVPNLQ--------------------IFR 37
           L    Y  QL  K   + Q++            P +                     I  
Sbjct: 260 LAHMTYIDQLEHKKQSMAQILKKLTRNARKACPPAIPLPDWVLKSKEIGGLPCKLEGILE 319

Query: 38  SEPI-HYRMRAEFHIWH--DGDDLYHIMFDQQTKERMRIDY---FMPGSLLINALMI--- 88
           S  +  YR + EF + +  +G      M     +    ++        S +         
Sbjct: 320 SPVVNGYRNKCEFSVGYSLEGKKTVGFMLGNFREGVTAVEEPVNCPNVSEISCKYAQMFQ 379

Query: 89  --------EMMATIRLEPLLRAKLFQIDYLTSQ-----------SDQAIVTLIYHRLLDD 129
                    + + I      R    +     ++           S+  ++  +    +D+
Sbjct: 380 DFLQSSGFPLWSKIDNSGFWRQLTVREGRCPAEAVVSQNAESQISEVMLIVQVCSTGVDE 439

Query: 130 A-WRECAIRLRDAL--------------HARKYQIQLIGRANKTK------ICLDRDYVD 168
           A  +E   +L  AL                     + I  A  T       +  + D +D
Sbjct: 440 ALMKEEFDKLSAALIQGAATCSPPLPLTTIVVQDHKGISNAAPTDCPLIPLLVPNGDQLD 499

Query: 169 E------RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
                  R+      L +     +F Q N      +              LL ++ CG G
Sbjct: 500 GTTEDKTRIHDHISNLKFSISPTAFFQVNTLAAERLYTLAGDWANLNSDTLLFDVCCGTG 559

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
              L LA     V+ +E+ + +V  A  N   N + N + V   +++    +  E 
Sbjct: 560 TIGLTLAHRVGMVVGIEMNESAVSDAHKNALINGIKNCRFVCSKAEDVMGPLLTEY 615



 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 43/179 (24%)

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
              ++V+     + +V +   N     + N K +  SS    +  +  ++ +   + ++ 
Sbjct: 684 DGVNKVVDCSHDEHNVASGEQNCGEASLLNDKPIETSSDNSLEQGKACQDGSSNPNDNVL 743

Query: 289 S-----YRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILS---- 336
           +     ++     VDPPR GL    +  ++ +P I   +YISCNP+SL  +   L     
Sbjct: 744 AANACQFKNVVAIVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPESLVANAIELCTPTS 803

Query: 337 -------------------------------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                                               +R    D FP+T H E  +L  R
Sbjct: 804 EKQEKNKGNRGWRSMSSAGLARQRTKSMPNSEPFIPKRAMAVDLFPHTPHCEMVMLFER 862


>gi|118618652|ref|YP_906984.1| SAM-dependent methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118570762|gb|ABL05513.1| SAM-dependent methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 401

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/249 (22%), Positives = 94/249 (37%), Gaps = 32/249 (12%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERLTVAGRTLIYRQ 182
           +    A  +  + L D     ++ +  + R  +T  K+      V +R+        +R 
Sbjct: 176 KAGWPAGAQLHVALGDD--GARHVVLTVRRGRRTDAKVVEGDPRVLQRVGER----SWRI 229

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVLAVE 238
              +F Q +          V    +   G    +LY G G F+ VL        RVL+V+
Sbjct: 230 PATAFWQSHRDAAKVCSGLVADWAQPGAGMTAWDLYGGAGVFAAVLGDAVGESGRVLSVD 289

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            A+ +  AAR   A   +  V++V  S +    A                        +D
Sbjct: 290 TARAASAAARV--ALADLPQVEVVTDSVRRVLAA---------------QDGGADIAVLD 332

Query: 299 PPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRH 355
           PPRSG     + ++       +++I C   S  RDL +     + +  + +FD FP T H
Sbjct: 333 PPRSGAGREVIDLLADAGVRRVVHIGCEAASFARDLGLYRGHGYGVHAIKVFDAFPLTHH 392

Query: 356 MECGVLLVR 364
           +EC  LL R
Sbjct: 393 VECVALLTR 401


>gi|304323057|gb|ADM23870.1| putative RNA methyltransferase [Brochothrix thermosphacta]
          Length = 90

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STT 338
           + +          I VDPPR G D+  +  +       I+Y+SCNP +L RD  +L    
Sbjct: 3   IPNWYKQGITADVICVDPPRKGCDEKLLNTLLKMKPRRIVYVSCNPATLARDARVLVDGG 62

Query: 339 HTIERLALFDQFPYTRHMECGVLLV 363
           + +E +   D FP T H+E      
Sbjct: 63  YKLEDVQPVDMFPQTTHVEVVTAFT 87


>gi|217976905|ref|YP_002361052.1| putative RNA methyltransferase [Methylocella silvestris BL2]
 gi|217502281|gb|ACK49690.1| putative RNA methyltransferase [Methylocella silvestris BL2]
          Length = 422

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/327 (19%), Positives = 109/327 (33%), Gaps = 37/327 (11%)

Query: 44  RMRAEFHIWHDGDDL-YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           R R  FH     D        + ++   + I        L  +L         L  LL A
Sbjct: 116 RRRVTFHARMSADGAASVGFMEARSHRIVDIAECPV---LAPSLAEAPQIARGLGRLLAA 172

Query: 103 KLFQIDYLTSQSDQAI-VTLIYHRLLDD--AWRECAIRLRDALHARKYQIQLIGRANKTK 159
               +D L + +   + + +  H  L +  A +     LR  L        ++       
Sbjct: 173 SGKPLDILITATTSGLDIDIRGHGPLSEDQAGQLVNFALRHDLARLANHGAIVALNRAPL 232

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I + +  V                  +F Q        +   V  A  G +  + +L+ G
Sbjct: 233 IRMGQAMV-------------APPPGAFLQATEAGEEALAAEVTQALSGAR-RVADLFAG 278

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G FSL LA  F  V AV+    ++ A         +  V +               R+ 
Sbjct: 279 VGTFSLRLAE-FAAVHAVDSEGAALSALAKAAGEARLRPVTV-------------ETRDL 324

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSILS-T 337
            R          +  I  DPPR+G  +    +  +  P ++ +SCN  S  RD + L   
Sbjct: 325 FRRPLSSEDLSSYDGIVFDPPRAGAPEQARAIAASRAPLVVAVSCNHQSFARDAATLCAG 384

Query: 338 THTIERLALFDQFPYTRHMECGVLLVR 364
            + +ER+   DQF ++ H+E      R
Sbjct: 385 GYELERVLPVDQFRHSPHLEIVARFRR 411


>gi|296117766|ref|ZP_06836350.1| SAM-dependent methyltransferase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295969497|gb|EFG82738.1| SAM-dependent methyltransferase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 438

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 126/367 (34%), Gaps = 75/367 (20%)

Query: 17  KVDRLRQMMLAF----QVPNLQIFRSEPIH-YRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           K+D L   +        +P+++     P   +R R    +   G          + +   
Sbjct: 111 KLDILVDQLHRVAKATDIPDIETINLNPQRGWRTRVRLGVDEQGRA------GARKRNSN 164

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            I + +  S L+  L+  ++          +++  +  + S+ D+ +V         ++ 
Sbjct: 165 DIVHEVACSQLVPGLVDGLVGADARRFTPNSEVIAV--IDSKGDRHVV---------ESS 213

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +    R  + +               T I    D V++          +     +F Q +
Sbjct: 214 KAPRGRRVEKV--------------TTVIEGSGDVVEQ-----ADGHEFSFPATAFWQAH 254

Query: 192 AGINVHMLEWVLAATKGIQGDL------LELYCGNGNFSLVLARHFD------RVLAVEI 239
                   E +    K     +       +LY G G F   +AR         RV++V+ 
Sbjct: 255 IAAPETYAEVIREYLKDCPHTVGREPLGWDLYGGVGVFVPAIARSLGSPQKPARVISVDY 314

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  +    + ++    ++ V                    +R++ +         + +DP
Sbjct: 315 SPAATALNQSDLEQYELDVVS-------------------DRVEKVAAQLPGPTAVVLDP 355

Query: 300 PRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHM 356
           PR+G     V  V   A   ++++ C+P +  RD++  +     ++RL+L + FP T H 
Sbjct: 356 PRTGAGLDVVSTVASVAPQRVVHVGCDPATFARDINYWNEHGFQVQRLSLVNAFPGTHHF 415

Query: 357 ECGVLLV 363
           E   LL 
Sbjct: 416 EVIALLE 422


>gi|323464012|gb|ADX76165.1| putative RNA methyltransferase, truncated [Staphylococcus
           pseudintermedius ED99]
          Length = 75

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + VDPPR G D   +  + A     I+Y+SCNP +  RD+ +LS  + ++ +   D FP+
Sbjct: 2   VTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLRDIEMLSAQYELKEMTPVDMFPH 61

Query: 353 TRHMECGVLLVRK 365
           T H+E   LLVRK
Sbjct: 62  TTHVETVALLVRK 74


>gi|71997438|ref|NP_503353.2| hypothetical protein H24K24.4 [Caenorhabditis elegans]
 gi|50058057|gb|AAF39900.2| Hypothetical protein H24K24.4 [Caenorhabditis elegans]
          Length = 603

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 23/170 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDR-----VLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
           LL++ CG G     L ++  +      + +E+   +VE A+ N   N +    K +   +
Sbjct: 439 LLDICCGTGTIGQCLLKNIQKSQKVCCIGIEMIAEAVEDAKQNAKQNKMETCCKYIAGKA 498

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISC 323
           ++  ++MR           D+   R   +  DPPR+G+ +  +   +       ++++SC
Sbjct: 499 EDTFRSMRYHLPNG----FDLRKSRVVGVL-DPPRAGMHEKVILACREMETMRRLIFVSC 553

Query: 324 NPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLVR 364
            P++   ++  L             ++ R+   D FP T HME  + L R
Sbjct: 554 EPNAAISNIVNLCRPSSRKYTGDAFSVTRVQPVDMFPQTNHMEWIIQLDR 603



 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 65/225 (28%), Gaps = 32/225 (14%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPI-HYRMRAEFHIWHDGDD-----LYHIMF 63
           Y Q +  KV  L +          +I  +     YR + EF I HD +           F
Sbjct: 152 YRQLIQNKVAHLGKQTQFRDRVLREILPAPKTAGYRNKCEFTIGHDLNGEICVGFVGGRF 211

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF----QIDYLTSQSDQAIV 119
            +     +        S  + A++ ++   ++   L     F        LT +     V
Sbjct: 212 SKNQHFVIPPVDVDIVSTQMMAIVGDVHEFVKESALEPFNEFDRKGFWRMLTIREFGGDV 271

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQ---------------IQLIGRANKT---KIC 161
            LI+     +   E    ++  +  R                   Q +   + T   K+ 
Sbjct: 272 MLIFTVFPLEDGVERMEEIQKKIETRFLDFETFKEKKYRVCSIYWQQMVHISDTPNFKLI 331

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
               Y+ E L        +R    +F Q N+     +   +    
Sbjct: 332 GGTPYIYESLL----DCRFRVSPPAFFQTNSQAAAVLYSTIGEHC 372


>gi|317121334|ref|YP_004101337.1| RNA methyltransferase, TrmA family [Thermaerobacter marianensis DSM
           12885]
 gi|315591314|gb|ADU50610.1| RNA methyltransferase, TrmA family [Thermaerobacter marianensis DSM
           12885]
          Length = 685

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 15/139 (10%)

Query: 213 LLELYCGNGNFSL---------VLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L++ Y G G  +L         V+A  R   RV A+E+   + E AR N A N + NV+ 
Sbjct: 424 LVDAYAGIGTLALLAAARLRDGVVAQDRRSWRVTAIEVVPEATEDARTNAALNGLENVEF 483

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHIL 319
           V  + +E    +    +                + +DPPR G D       +  A P I+
Sbjct: 484 VTGAVEEVLPHLAAALQEAAGTGPGRGG--PDVVLLDPPRKGCDPAALAACLELAPPRIV 541

Query: 320 YISCNPDSLCRDLSILSTT 338
           Y+SCNP +L RDL++L  T
Sbjct: 542 YVSCNPVTLARDLAVLCDT 560



 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 31/236 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-VPNLQIF----RSEPIHYRMRAEFHIWH-DG 55
              L    Y QQLA K   +   +     +P+  +        P +YR +A   +     
Sbjct: 127 GCRLQHLAYPQQLAWKRQMVVDALERIGRIPDPPVGETLGMDPPWYYRNKAAIPVRRLPS 186

Query: 56  DDLYHIMFDQQTKERMRIDY--FMPGSLLINALMIEMMATIRLEP--------------- 98
             +    F   T   + ++         +IN ++  +   +  +P               
Sbjct: 187 GRVVMGFFAPGTHAVIDLEATGCAIQHPVINQVVAALRRWLEEDPDGRATSTYDETRHQG 246

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ----LIGR 154
           LLR  + ++   + ++   +V        ++       R    L      +         
Sbjct: 247 LLRHLVVRVGLRSGEALAGLVVNGEGLPGEERLARYLRREVPQLVGVVKNLHRRPGNAIL 306

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
             +T     R ++ + L      L +R    SF Q N      +    L    G  
Sbjct: 307 GPETVPLDGRPWIFDELG----GLRFRISLESFYQVNPVQAERLYRLALDYALGRP 358



 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP T H+EC  LL R
Sbjct: 632 PVDMFPQTAHVECVALLER 650


>gi|328544922|ref|YP_004305031.1| tRNA (Uracil-5-)-methyltransferase superfamily [polymorphum gilvum
           SL003B-26A1]
 gi|326414664|gb|ADZ71727.1| tRNA (Uracil-5-)-methyltransferase superfamily [Polymorphum gilvum
           SL003B-26A1]
          Length = 411

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 63/317 (19%), Positives = 111/317 (35%), Gaps = 39/317 (12%)

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           G  +     ++ +   + +         I A +  +  T+    + R    +I  L S++
Sbjct: 127 GHKILLGYHEKASHRLVDVTECPVLVPAITAALPGLK-TLAAALMPRRGEVRIAVLASEA 185

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER---- 170
               V +       +        L   L             +  ++ +D + + ER    
Sbjct: 186 GLD-VAVGNAAPGTEKKLVALTALAADL-------------DLARLSVDGETIVERRAPV 231

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           LT+   +++      +FTQ  A     +   V  A  G      +L+ G G F+L +A  
Sbjct: 232 LTMGRASVV--PPPGAFTQATAEAETALAGLVAQA-LGPAKRAADLFAGIGTFTLRMAET 288

Query: 231 FDRVLAVEIAKPSVEAARYNIAA-NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              V AVE    ++ A    I     +  V                 R+  R   +    
Sbjct: 289 A-SVHAVEAEAAALAALDRAIRVPRGLKQVT-------------LERRDLFRRPLMAAEL 334

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY-PHILYISCNPDSLCRDLSIL-STTHTIERLALF 347
             F  +  DPPR+G       + Q+    I  +SCNP +L RDL IL    + +  +   
Sbjct: 335 APFDAVVFDPPRAGAQAQAEQLAQSRVARIAAVSCNPATLARDLRILIDGGYRLLSVTPV 394

Query: 348 DQFPYTRHMECGVLLVR 364
           DQF ++ H+E    L R
Sbjct: 395 DQFLFSTHVEAVAALER 411


>gi|296139597|ref|YP_003646840.1| deoxyribonuclease/rho motif-related TRAM [Tsukamurella
           paurometabola DSM 20162]
 gi|296027731|gb|ADG78501.1| deoxyribonuclease/rho motif-related TRAM [Tsukamurella
           paurometabola DSM 20162]
          Length = 392

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 32/233 (13%)

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGR--TLIYRQIENSFTQPNAGINVHMLE 200
            A   ++ ++   +  +  +    +D       R     +R     F Q +        E
Sbjct: 173 PAPGDEVAVVLDDDGARHAVGSTVLDGTGVADYRVGDTAWRLPAGGFWQAHRDAATRYSE 232

Query: 201 WVLAATKGIQGD--------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            V     G+  +          +LY G G F+ VLAR   RV  VE +  +V A R ++ 
Sbjct: 233 LVGRWAAGLTAEGTVEPGDRAWDLYGGAGVFAAVLARLGLRVDVVETSSDAVAAGRASL- 291

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS--GLDDATVG 310
               + V+  R         +R  R                 + +DPPRS  G     V 
Sbjct: 292 --DPSAVRFHRGDVARTVGRLRAPR----------------VVVLDPPRSGAGKAVVAVV 333

Query: 311 MVQAYPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLL 362
                  ++++ C+P +  RDL++       +  +   D FP T H+EC  +L
Sbjct: 334 AAAGPAAVIHVGCDPAAFARDLALFRDAGFAVREVVALDAFPGTHHLECLAVL 386


>gi|326384422|ref|ZP_08206102.1| SAM-dependent methyltransferase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196767|gb|EGD53961.1| SAM-dependent methyltransferase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 426

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 114/353 (32%), Gaps = 55/353 (15%)

Query: 25  MLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN 84
                 P ++        +R+R    +   G      +  +++ + +      P + L++
Sbjct: 114 FDDLAQPEIEALGDSSTGWRIRTRLAVDRAG---RAGLRGRRSAQIVTEPCAAPVTGLLD 170

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA 144
            +       +   P     L         + +               R  A R R A  A
Sbjct: 171 GV-----DDLGARPGTEIVLMADADGGRHAGELAAAGDGRDGRGGPGRRRAQRSRGARSA 225

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM----LE 200
            +    L G  + T    DR++              R     F Q +           LE
Sbjct: 226 PRALRPLDGADSVTHRVGDREW--------------RIRVTGFWQAHRDAPRVYSMAALE 271

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVL----ARHFDRVLAVEIA---KPSVEAARYNIAA 253
            +       +  + +LY G G FS  L    A H   V ++++      ++ AAR  +A+
Sbjct: 272 MLADVGVHGRVHVWDLYGGAGVFSAALLDGGAEHGFEVSSIDLVDTDPGALAAARETLAS 331

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
              + V   R    E    +R                  + +  DPPR+G     V  + 
Sbjct: 332 ---DPVHAHRGGVAESIAGLRA----------------PQVVVSDPPRAGAGLHVVDAIA 372

Query: 314 A--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
           A     ++++ C+  S  RDL   +T  + +     FD FP T H+E   +L 
Sbjct: 373 AARPDAVVHVGCDAASFARDLGRFATHGYRVRGWRGFDAFPMTHHIEAIAVLT 425


>gi|224007687|ref|XP_002292803.1| RNA methyltransferase [Thalassiosira pseudonana CCMP1335]
 gi|220971665|gb|EED89999.1| RNA methyltransferase [Thalassiosira pseudonana CCMP1335]
          Length = 154

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 11/159 (6%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            LLE+YCG G  ++ LA+      ++AVE+ +    A R N   N  +  +     +K+ 
Sbjct: 1   RLLEMYCGCGAHTIPLAKSALLSEIVAVELDERLANACRRNCRLNGCDAAEW----AKKT 56

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCNPD 326
            +   ++R   +    + H   F  + VDPPR GLD     +        H++YISC   
Sbjct: 57  LKDQSKQRTNTKQPSFN-HYNNFDILLVDPPREGLDKIVCDLAINKGTFQHVVYISCGRV 115

Query: 327 SLCRDLSILSTT-HTIERLALFDQFPYTRHMECGVLLVR 364
           +L RDL IL      +  LA+ D FP T  +E  V L R
Sbjct: 116 ALLRDLDILCKGGFNVVNLAVIDLFPGTDAVESLVHLRR 154


>gi|227504958|ref|ZP_03935007.1| SAM-dependent methyltransferase [Corynebacterium striatum ATCC
           6940]
 gi|227198467|gb|EEI78515.1| SAM-dependent methyltransferase [Corynebacterium striatum ATCC
           6940]
          Length = 437

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 79/234 (33%), Gaps = 41/234 (17%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
             R  + +  LD       +  A     +R    +F Q +        + V         
Sbjct: 220 APRGRRVETVLDVVEGSGDVVQAADGHEFRFPATAFWQAHTSAPDSYTQLVRDWLTDSSA 279

Query: 212 D------LLELYCGNGNFSLVLAR-------------HFDRVLAVEIAKPSVEAARYNIA 252
           D        +LY G G F   L                  ++ +V+ +  +    + ++A
Sbjct: 280 DPAMPAVAWDLYGGVGLFVPALHDALADTASLGRPQAQAPKIYSVDYSPAAAAHTQESLA 339

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGM 311
           A    +V       +     +                     + +DPPR+G  D+  + +
Sbjct: 340 A---YDVSFRNAKVEACAAQLPA----------------PGYVVLDPPRTGAGDEVVLAV 380

Query: 312 VQAYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
            QA P  ++++ C+P +  RDL       + ++RL + + FP T H E   LL 
Sbjct: 381 AQAGPRSVVHVGCDPATFARDLKAWKEAGYALKRLTMVNAFPGTHHFETMALLQ 434


>gi|309357517|emb|CAP35435.2| hypothetical protein CBG_17893 [Caenorhabditis briggsae AF16]
          Length = 619

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 74/170 (43%), Gaps = 23/170 (13%)

Query: 213 LLELYCGNGNFSLVLARHFDR-----VLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSS 266
           LL++ CG G     L ++ +       + +E+   +VE A+ N   N +    K +   +
Sbjct: 455 LLDICCGTGTIGQCLLKNIENTQKVFCVGIEMITEAVEDAKQNAKQNKMEKCCKYIAGKA 514

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISC 323
           ++  ++M+ +         D+ + R   +  DPPR+G+ +  +   +       ++++SC
Sbjct: 515 EDTFRSMKYQLPAG----FDLRTSRVVGVL-DPPRAGMHEKVILACREMSTMRRLIFVSC 569

Query: 324 NPDSLCRDLSILSTT---------HTIERLALFDQFPYTRHMECGVLLVR 364
            P++   ++  L             ++ R+   D FP T HME  + L R
Sbjct: 570 EPNAAINNIVNLCRPESRKYSGDAFSVTRVQPVDMFPQTNHMEWIIQLDR 619



 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 81/276 (29%), Gaps = 68/276 (24%)

Query: 5   LLIDQYEQQLAEKVD-------RLRQMMLAFQVPNL-----------QIFRSE-PIHYRM 45
           L   +YE+QL  K         +L + +   +V  +           QI  S     YR 
Sbjct: 132 LAEMEYEKQLELKQQNSVKVMNKLHEQLQRNKVEKIGKQTEFRKRLQQILPSPKTTGYRN 191

Query: 46  RAEFHIWHDGD-----DLYHIMFDQQTKERMR---IDYFMPGSLLI---NALMIEMMATI 94
           + EF I HD +           F +     +    +D   P  + I       ++     
Sbjct: 192 KCEFTIGHDLNTDICIGFVGGRFAENRHFVIPPLNVDIVSPQMMSIVGDAHEFVKETELA 251

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVT-----LIYHRLLDDAWRECAIRLRDA--LHARKY 147
             +   R   +++  +       ++      L      ++  ++ A R  D     ++KY
Sbjct: 252 PFDEFERKGFWRLLTVREFGGDVMLIFTVFPLDSAEKTEEVQKKIAKRFMDFETFTSKKY 311

Query: 148 QIQLIGRANKT--------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
           ++  I              K+     Y+ E L        +R    +F Q N+     + 
Sbjct: 312 RVCSIYWQEMVHISDTPNFKLIAGTPYIYESLL----DCRFRVSPPAFFQTNSQGASVLY 367

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
             +               CG       LA     V+
Sbjct: 368 STIGEL------------CG-------LAEKVSEVV 384


>gi|305681414|ref|ZP_07404221.1| TRAM domain protein [Corynebacterium matruchotii ATCC 14266]
 gi|305659619|gb|EFM49119.1| TRAM domain protein [Corynebacterium matruchotii ATCC 14266]
          Length = 410

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 110/368 (29%), Gaps = 66/368 (17%)

Query: 11  EQQLAEKVDRLRQMMLAFQ----VPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMFDQ 65
           E +L  K   L   +        +P++      P   +R R    +   G          
Sbjct: 93  EAELELKTTILTGQLTKLGKLAALPSITAQELLPTTGWRSRIRLGVDRAG---RAGFRKA 149

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
            + + +     +         M  ++       +      +     +   + I       
Sbjct: 150 HSHDLVTDHRCI-------QPMPGLLGDGPDSIVGADSNHRF----TPGAEVIAV----- 193

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            LDD      + +R     R+ +I        TK+      V +++        +     
Sbjct: 194 -LDDDGTRHVVEVRKPARGRRSEII-------TKVISGTGDVVQKVG----EYTFTLPPT 241

Query: 186 SFTQPNAGINVH----MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           +F Q +          + +WV     G++    +LY G G     L       L      
Sbjct: 242 AFWQAHHQALSTYSDLITQWVTGGQYGVEPVGWDLYGGVGALVPAL----HHALGNNSHI 297

Query: 242 PSVEAARYNIAANHV---NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            SVE+AR    +  V   ++V             +                 +   + +D
Sbjct: 298 HSVESARIMATSGQVTFGDDVHFHIGLVGNLVDTLP----------------QPDVVVLD 341

Query: 299 PPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRH 355
           PPR G     V  + A     +++I C+P +   D+   S   + +  + + + FP T H
Sbjct: 342 PPRVGAGADVVTRIAARKPQRVIHIGCDPATFATDIRAWSQAGYHLSDIVVVNAFPGTHH 401

Query: 356 MECGVLLV 363
            E   LL 
Sbjct: 402 FETLGLLQ 409


>gi|296125501|ref|YP_003632753.1| (uracil-5)-methyltransferase [Brachyspira murdochii DSM 12563]
 gi|296017317|gb|ADG70554.1| (Uracil-5)-methyltransferase [Brachyspira murdochii DSM 12563]
          Length = 397

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 135/372 (36%), Gaps = 58/372 (15%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
                   Y +QL+ K + +   +       +++I   +  +YR+R          +   
Sbjct: 74  GCVFNHIDYNKQLSIKKNIVLNAVRNLEYKKDIKIIYDKNYNYRLRVNM----IASNGSI 129

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
             +  +T +   ID  +        L   +   I+           I  + + S +A+  
Sbjct: 130 GFYRFKTNDFAAIDECVI-------LKDSLFKRIKDFSKENNITGSIYAIENNSREALAF 182

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L   + +            +     KY   +  + NKT     R + D  +T   +    
Sbjct: 183 LDSDKKI------------NIKSFEKYFNGITIKHNKTV----RSFGDISMTYKTKYGNI 226

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD------RV 234
                +F Q N  +     +  +         ++ELY G+G F+  +           + 
Sbjct: 227 GIGHKTFFQSNLYLLDIFQDEAVKYITQDDNTIIELYAGSGFFTAAIESKLKSFNKEYKF 286

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           ++ EI+K SV  A  N    ++ N                 E  F  LK+I+   Y    
Sbjct: 287 ISSEISKDSVYIA--NKYNFNIKN-----------------EESFITLKNIN---YDIDA 324

Query: 295 IFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + +DPPR G+D  T+   +      I+Y+SC+P +  RD+++L   + +  L++ D F  
Sbjct: 325 LVLDPPREGIDKKTINEIIRIKPKKIIYVSCDPMTFSRDINLLKDYYKLSDLSIIDMFAD 384

Query: 353 TRHMECGVLLVR 364
           T H+E    L +
Sbjct: 385 TYHIETVSYLEK 396


>gi|552024|gb|AAA27233.1| m-5-U54 transfer RNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium]
          Length = 102

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 65/97 (67%), Gaps = 1/97 (1%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEP-IHYRMRAEFHIWHDGDDLYHIMF 63
           L  +QYE QLAEKV RL+ MM  F     ++F+  P  HYRMRAEF +WHDGDDLYHIMF
Sbjct: 6   LPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFQLMPVSHYRMRAEFRLWHDGDDLYHIMF 65

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           DQQT  R+R+D F   S LIN LM  M+A +R    L
Sbjct: 66  DQQTFCRIRVDTFPAASQLINTLMKAMIAGVRDNHAL 102


>gi|169840744|ref|ZP_02873857.1| RNA methyltransferase, TrmA family protein [candidate division TM7
           single-cell isolate TM7a]
          Length = 120

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 14/118 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L+ G G    ++++   +V  +E+ +  VE A  N   N + N   +          
Sbjct: 12  VFDLFSGTGTIGQIVSKKAKQVYGIELVEEDVEKANENAKLNGIENAHFIAGDV------ 65

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSL 328
                 F +L + D +  +   I +DPPR+G+ + T+  +  Y    I+Y+SCNP  L
Sbjct: 66  ------FEKLDEFDKNGIKPDIIILDPPRAGVGEKTLNKLLKYDVKDIIYVSCNPKHL 117


>gi|297722731|ref|NP_001173729.1| Os04g0105000 [Oryza sativa Japonica Group]
 gi|255675113|dbj|BAH92457.1| Os04g0105000 [Oryza sativa Japonica Group]
          Length = 404

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 1/119 (0%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA 228
           R+      L +     +F Q N      +            G LL ++ CG G   L LA
Sbjct: 48  RIHDHIGNLWFSISPTAFFQVNTLAAERLYTLAGDWANLNSGTLLFDVCCGTGTIGLTLA 107

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                V+ +E+ + +V  A  N   N V+N + V   +++   ++  E   +  +DI +
Sbjct: 108 HRVGMVVGIEMNESAVSDAERNALINGVSNCRFVCGKAEDVMGSLLTEYLGSPQQDIPV 166



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 40/123 (32%), Gaps = 38/123 (30%)

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILS 336
           N +       +      VDPPR GL    +  ++ +P I   +YISCNPDSL  +   L 
Sbjct: 282 NDVTAATACQFEDIVAIVDPPRVGLHPTVIKALRTHPRIRRLVYISCNPDSLVANAIELC 341

Query: 337 -----------------------------------TTHTIERLALFDQFPYTRHMECGVL 361
                                                   +R    D FP+T H E  +L
Sbjct: 342 TPSSEKQEKNKGNRGWRTMSSAGLARQRTKSMPNSEPFVPKRAMAVDLFPHTSHCEMVML 401

Query: 362 LVR 364
             R
Sbjct: 402 FER 404


>gi|227549133|ref|ZP_03979182.1| RNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078801|gb|EEI16764.1| RNA methyltransferase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 410

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/199 (22%), Positives = 68/199 (34%), Gaps = 24/199 (12%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELYCGNGNFSLVLARHFDRVL 235
             +R    +F Q +        E + +  K         +LY G G F   +        
Sbjct: 230 HAFRFPATAFWQAHVAAPAAYSEVIRSWGKADYERATGWDLYGGVGAFVPAIDEALGGAA 289

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            ++    SV A R                 + + T A    R  N   +          +
Sbjct: 290 HIDSVDYSVSATR-----------------AAQDTLAGFALRVHNSPVEKAGELTPPGLV 332

Query: 296 FVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPY 352
            +DPPRSG  +  V  V   A   I+++ C+P +  RDL   +     + R+ L D FP 
Sbjct: 333 VLDPPRSGAGEDVVRRVAGAAPERIIHVGCDPATFARDLGYWAAHGFGVRRMVLIDAFPN 392

Query: 353 TRHMECGVLLVRKPSGWHQ 371
           T H E    L   P G  Q
Sbjct: 393 THHFEMIAQLE--PDGQMQ 409


>gi|164656170|ref|XP_001729213.1| hypothetical protein MGL_3680 [Malassezia globosa CBS 7966]
 gi|159103103|gb|EDP41999.1| hypothetical protein MGL_3680 [Malassezia globosa CBS 7966]
          Length = 411

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 101/295 (34%), Gaps = 66/295 (22%)

Query: 2   SGTLL-IDQYEQQLAEKVDRLRQMMLAFQVPN--------LQIFRSEPIHYRMR------ 46
            G    +  Y QQL  K + +R+    +   +          +   E +HYR +      
Sbjct: 144 GGCQYQMIPYAQQLEIKREVVRRAYANYSRLDASLVPDVLPTMGSPETMHYRTKLTPHFD 203

Query: 47  --AEFHIWHDGDDLY-------HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
             A     H  D              +  T   M I+    G+ ++N  M      +R  
Sbjct: 204 LPAVLRRTHGTDLPVDMSVSVPIGFDNATTGRVMDIEECPIGTHVLNEAMTHERQRVR-- 261

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
                     D + S  + A +                  LRD+L +       +   +K
Sbjct: 262 ----------DSIRSYKNGATLL-----------------LRDSLCSADSDASTVVTDHK 294

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD--LLE 215
                    V ER+        +     +F Q N  I   ++++V +          L++
Sbjct: 295 A-------TVHERVG----GTTFSTPAGAFFQNNRSIIPLVMDYVKSQLPSKSSPQYLVD 343

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            YCG+G F++ LA  FD+V  VEI+  S+E A+ N   N+V N   +   ++   
Sbjct: 344 TYCGSGLFAICLAPLFDQVAGVEISTSSIECAKANAKQNNVQNATFLAGEAERIF 398


>gi|213857922|ref|ZP_03384893.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
          Length = 97

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HILYISCNPDSLCRDLSI 334
           E     +         F  + +DP R+G       +++  P  I+Y+SCNP +L RD   
Sbjct: 6   ENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEA 65

Query: 335 L-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 66  LVNAGYEVTRLAMLDMFPHTGHLESMVLFER 96


>gi|68073839|ref|XP_678834.1| SAM-dependent methyltransferase related to
           tRNA(uracyl-5-)-methyltransferase [Plasmodium berghei
           strain ANKA]
 gi|56499427|emb|CAI04980.1| SAM-dependent methyltransferase related to
           tRNA(uracyl-5-)-methyltransferase, putative [Plasmodium
           berghei]
          Length = 673

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 99/257 (38%), Gaps = 31/257 (12%)

Query: 33  LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA 92
             I  S+  HYR ++ FH     D L    + + + E   I+        I  +  ++  
Sbjct: 271 YDIIHSDCYHYRNKSTFHFSVT-DKLSIGFYKRHSYEICDINECYIQDKQIQKIYGDIKN 329

Query: 93  TI-----RLEPLLRAKLFQIDYL--------TSQSDQAIVTLIYHRLLDDAWRECAIRLR 139
            I     +    +  K+    YL         S S+  I+       L +  ++  I + 
Sbjct: 330 EIIDNFKKNNIYIVNKINNNGYLKSVDIKYSVSNSENQILINFIGCTLTNEAKKNMINIA 389

Query: 140 DALHARKYQIQLIGRA---------NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           + L  +   I+ I             K      ++Y+            Y+   N+F QP
Sbjct: 390 NNLAIKNKSIKGILYNVETNKLKQIKKEITLFGQNYIYHTY----NNYTYKLGANTFFQP 445

Query: 191 NAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           N  +N  +++ V    +  +      + +L+CG G +SL L+  F+ V++V+ +  +++ 
Sbjct: 446 NQYLNECIIQIVFKLIQNYKSSQTQCVFDLFCGIGFYSLPLSSMFNHVISVDYSIENIKN 505

Query: 247 ARYNIAANHVNNVKIVR 263
              NI  N++ NVK + 
Sbjct: 506 LEENIKLNNIQNVKPIH 522


>gi|330253031|gb|AEC08125.1| zinc finger CCCH domain-containing protein 24 [Arabidopsis
           thaliana]
          Length = 804

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 1/109 (0%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA 228
           R+      L +     +F Q N      +              LL ++ CG G   L LA
Sbjct: 517 RIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPDTLLFDVCCGTGTIGLTLA 576

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
                V+ +E+   +V  A  N   N ++N K +   +++   ++ ++ 
Sbjct: 577 HRVGMVIGIEMNASAVADAERNATINGISNCKFICSKAEDVMSSLLKQY 625



 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 38/135 (28%)

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNP 325
            +E     +++      +      ++     VDPPRSGL  A +  ++ +P   YISCNP
Sbjct: 672 VEELQDNEQKDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRTHPR--YISCNP 729

Query: 326 DSLCRDLSILSTT------------------------------------HTIERLALFDQ 349
           ++L  +   L T                                         +    D 
Sbjct: 730 ETLVANAIELCTPSFDEPDRGNKNYRGRKKIGIAALARHRAKSMPTSEAFRPVKAMAVDL 789

Query: 350 FPYTRHMECGVLLVR 364
           FP+T H E  +LL R
Sbjct: 790 FPHTDHCEMVMLLER 804


>gi|297521608|ref|ZP_06939994.1| 23S rRNA methyluridine methyltransferase [Escherichia coli OP50]
          Length = 105

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%)

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A+ + A   +  ++   + S +F  A                    + + V+PPR G+  
Sbjct: 1   AKQSAAELGLTRLQFQALDSTQFATA---------------QGEVPELVLVNPPRRGIGK 45

Query: 307 ATVGMVQ-AYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
                +    P  I+Y SCN  ++ +D+  L   + IER+ LFD FP+T H E   LLV+
Sbjct: 46  PLCDYLSTMAPRFIIYSSCNAQTMAKDVREL-PGYRIERVQLFDMFPHTAHYEVLTLLVK 104


>gi|30683900|ref|NP_180412.2| zinc finger (CCCH-type) family protein [Arabidopsis thaliana]
 gi|75154217|sp|Q8L7S3|C3H24_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 24;
           Short=AtC3H24
 gi|22135822|gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana]
 gi|25090447|gb|AAN72304.1| At2g28450/T1B3.3 [Arabidopsis thaliana]
 gi|330253030|gb|AEC08124.1| zinc finger CCCH domain-containing protein 24 [Arabidopsis
           thaliana]
          Length = 809

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 1/109 (0%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA 228
           R+      L +     +F Q N      +              LL ++ CG G   L LA
Sbjct: 517 RIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPDTLLFDVCCGTGTIGLTLA 576

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
                V+ +E+   +V  A  N   N ++N K +   +++   ++ ++ 
Sbjct: 577 HRVGMVIGIEMNASAVADAERNATINGISNCKFICSKAEDVMSSLLKQY 625



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 39/138 (28%)

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYIS 322
            +E     +++      +      ++     VDPPRSGL  A +  ++ +P +   +YIS
Sbjct: 672 VEELQDNEQKDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYIS 731

Query: 323 CNPDSLCRDLSILSTT------------------------------------HTIERLAL 346
           CNP++L  +   L T                                         +   
Sbjct: 732 CNPETLVANAIELCTPSFDEPDRGNKNYRGRKKIGIAALARHRAKSMPTSEAFRPVKAMA 791

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H E  +LL R
Sbjct: 792 VDLFPHTDHCEMVMLLER 809


>gi|312071590|ref|XP_003138678.1| hypothetical protein LOAG_03093 [Loa loa]
 gi|307766151|gb|EFO25385.1| hypothetical protein LOAG_03093 [Loa loa]
          Length = 151

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 21/154 (13%)

Query: 227 LARHFDR--VLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRREREFNRL 282
           LAR F R  ++ +EI   ++E A  N + N++  ++ K V   ++      R E+     
Sbjct: 3   LARTFTRKFLVGIEIIPEAIEDAATNASDNNLPPDSYKFVSGKAENVF--FRLEQLVPSW 60

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDAT---VGMVQAYPHILYISCNPDSLCRDLSILS--- 336
            D+   +       +DPPR+G+ +        +     I+++SC+P    +++  L    
Sbjct: 61  VDLKTANIIG---VIDPPRAGIHEKVVIGCRTLAQLKKIVFVSCSPSLAMKNMVDLCRPT 117

Query: 337 ------TTHTIERLALFDQFPYTRHMECGVLLVR 364
                     +  +   D FP T H E  V   R
Sbjct: 118 SRKFEGEPFKLTSITPVDMFPQTSHCEWVVQFDR 151


>gi|311739580|ref|ZP_07713415.1| SAM-dependent methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311305396|gb|EFQ81464.1| SAM-dependent methyltransferase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 407

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 118/360 (32%), Gaps = 68/360 (18%)

Query: 17  KVDRLRQMMLAFQVP-----NLQIFRSEPIH-YRMRAEFHIWHDGDDLYHIMFDQQTKER 70
           K + L + +    V      N++    EP+  +R R     W            +++ E 
Sbjct: 101 KAEILSEQLRRTGVVTGEELNIEQHTLEPVRGWRTRVR---WGVDKQGRAGTRQRRSNEL 157

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           +              L   +   +  E   R          +   + I        LD  
Sbjct: 158 VTGAACT-------QLAPGLAERLVGEGARRF---------TPGAEVIAV------LDGE 195

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
                +  R A   R+ +          K+    ++VD R         +     +F Q 
Sbjct: 196 GNRHVVETRKAPRGRRVETIREVVEGSGKV---HEHVDGR--------TFSFPATAFWQA 244

Query: 191 NAGINVHMLEWVLAATKGIQ---GDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEA 246
           ++       + +     G +       +LY G G F  VLA     +V++V+ +  +   
Sbjct: 245 HSHAPAAYTDLIAEWLGGREYQEHTAWDLYGGVGLFVPVLAHAVQGKVISVDYSPAATAG 304

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                    + +  +   S+              +++ +     +   + +DPPR+G  +
Sbjct: 305 -----EQAGLADCDVEVKSA--------------KVEQVAAQLPKPGAVVLDPPRTGAGE 345

Query: 307 ATVG--MVQAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
             +      A   ++++ C+P +  RDL   +   + I +LAL + FP T H E   L+ 
Sbjct: 346 DVIRSVAAAAPQAVVHVGCDPATFARDLGYWNQHGYGIGKLALINAFPGTHHFETIALIT 405


>gi|319948474|ref|ZP_08022608.1| RNA methyltransferase [Dietzia cinnamea P4]
 gi|319437841|gb|EFV92827.1| RNA methyltransferase [Dietzia cinnamea P4]
          Length = 232

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/201 (23%), Positives = 77/201 (38%), Gaps = 28/201 (13%)

Query: 180 YRQIENSFTQPNAGINVHM---LEWVLAATKGIQGD--LLELYCGNGNFSLVL--ARHFD 232
           +R    +F Q +     H    +  V+A   G+  +  + +LY G G F+  +  A    
Sbjct: 36  WRLPPEAFWQAHRSAATHYASAVRTVVAQAPGLPDEPVVWDLYGGAGLFAAAVREAVPGA 95

Query: 233 RVLAVEIAKPSVEAA--------RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           RV  VE +  S+ A             +A     V  VR   + F + +          D
Sbjct: 96  RVTVVESSSASLGAVSTTPGSGDPDTASAAG-PGVHTVRSRVETFLEDLAS--------D 146

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTI 341
            D H      + +DPPR G     +  +       I+++ C+  SL RD+  L +   T+
Sbjct: 147 ADAHPA-PDVVVLDPPRGGAGIPVMQRLAEVTRSRIVHVGCDAASLARDVGALVAAGWTL 205

Query: 342 ERLALFDQFPYTRHMECGVLL 362
             L     FP T H+E   +L
Sbjct: 206 TDLRGVAAFPGTHHVEGIAVL 226


>gi|153824095|ref|ZP_01976762.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Vibrio cholerae B33]
 gi|126518382|gb|EAZ75605.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Vibrio cholerae B33]
          Length = 87

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHILYISCNPDSLCRDL-SILSTTH 339
           +        +F  + +DP R+G +     +       ++Y+SCNP +L RD  S+LS   
Sbjct: 1   MTSASWAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGF 60

Query: 340 TIERLALFDQFPYTRHMECGVLLVRK 365
            +E+L + D FP+T H+E   L V+K
Sbjct: 61  RLEKLGMLDMFPHTSHLESMALFVKK 86


>gi|315444837|ref|YP_004077716.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Mycobacterium sp. Spyr1]
 gi|315263140|gb|ADT99881.1| SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase
           [Mycobacterium sp. Spyr1]
          Length = 402

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 24/193 (12%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF---DRV 234
            +R    +F Q +          V    +   G    +LY G G F+  LA        V
Sbjct: 227 SWRVPATAFWQAHRAAPELYSALVTRWARLEPGMSAWDLYGGAGVFAAALAAGVGPDGSV 286

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L V+ ++ +  +AR   A   + NV +V  S +    A R                R   
Sbjct: 287 LTVDTSRGASRSAR--AALGDLGNVTVVTDSVRRALGAQRE---------------RADV 329

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
             +DPPR+G     + ++     P I++I C   S  RD+ +  +  + +E L ++D FP
Sbjct: 330 AVLDPPRTGAGREVIDLLAGAGVPRIIHIGCEAASFARDVGLYRTHGYAVEELQVYDSFP 389

Query: 352 YTRHMECGVLLVR 364
            T H+EC  +L R
Sbjct: 390 LTHHVECVAVLSR 402


>gi|331240302|ref|XP_003332802.1| tRNA (uracil-5-)-methyltransferase [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309311792|gb|EFP88383.1| tRNA (uracil-5-)-methyltransferase [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 514

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 99/312 (31%), Gaps = 85/312 (27%)

Query: 7   IDQYEQQLAEKVDRLRQMMLAFQ--------VPNLQIFRSEPIHYRMRAEFHIW------ 52
           +  Y++QL  K   +++    F            L +   +   YR +   H        
Sbjct: 239 MIDYQKQLDLKRVAVQKAFEHFSGLDQSAIPTVELTLQSPKEYEYRTKLTPHFELPRQWK 298

Query: 53  ---------HDGDDLYH--------IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR 95
                     +    YH         + ++  +  + I+    G+  IN  +        
Sbjct: 299 NKKATQVPNQESGQDYHSGPGGLAIGLAEKGRRRVIDIEECPLGTKTINEKLTAERTRTY 358

Query: 96  LEP---LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
                 LLR  L  +D  +S              +DD  R C    +  +  +       
Sbjct: 359 KRGATLLLRESLIPLDPTSSSD----------SPVDDESRICVTDHKTIVREK------- 401

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN----VHMLEWVLAATKG 208
                    LD++              + Q   SF Q N  I      +M+E ++     
Sbjct: 402 --------VLDKN--------------FEQNAGSFFQNNPSILGPFMSYMIEELIPTKTP 439

Query: 209 IQGD--------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
              D        L++ YCG+G FS+ LA+ F +   +E++  S+  A+ N   N + N  
Sbjct: 440 RGIDEDPEQHEYLVDAYCGSGLFSISLAQFFTKTTGIELSSDSLRYAKRNADLNKITNAS 499

Query: 261 IVRMSSKEFTQA 272
            +   ++   + 
Sbjct: 500 FIAGEAEAIFKK 511


>gi|226323269|ref|ZP_03798787.1| hypothetical protein COPCOM_01041 [Coprococcus comes ATCC 27758]
 gi|225208459|gb|EEG90813.1| hypothetical protein COPCOM_01041 [Coprococcus comes ATCC 27758]
          Length = 87

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP-HILYISCNPDSLCRDLSIL-STTHTI 341
           +         +F+DPPR+G D+  +   V+  P  I+YISCNP++L RDL  L    + +
Sbjct: 1   MAAEGNSMDVLFMDPPRAGSDEKFMASAVKMGPEKIVYISCNPETLARDLKYLTKKGYQV 60

Query: 342 ERLALFDQFPYTRHMECGVLLVRK 365
           +++   + F +T H+E   LL +K
Sbjct: 61  KKIQPVEMFAFTEHVETVCLLSKK 84


>gi|145224506|ref|YP_001135184.1| (Uracil-5)-methyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|145216992|gb|ABP46396.1| (Uracil-5)-methyltransferase [Mycobacterium gilvum PYR-GCK]
          Length = 402

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 24/193 (12%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF---DRV 234
            +R    +F Q +          V    +   G    +LY G G F+  LA        V
Sbjct: 227 SWRVPATAFWQAHRAAPELYSALVTRWAQLELGMSAWDLYGGAGVFAAALAAGVGPDGSV 286

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           L V+ ++ +  +AR   A   + NV +V  S +    A R                R   
Sbjct: 287 LTVDTSRGASRSAR--AALGDLGNVTVVTDSVRRALGAQRE---------------RADV 329

Query: 295 IFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFP 351
             +DPPR+G     + ++     P I++I C   S  RD+ +  +  + +E L ++D FP
Sbjct: 330 AVLDPPRTGAGREVIDLLAGAGVPRIIHIGCEAASFARDVGLYRTHGYAVEELQVYDSFP 389

Query: 352 YTRHMECGVLLVR 364
            T H+EC  +L R
Sbjct: 390 LTHHVECVAVLSR 402


>gi|297822425|ref|XP_002879095.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297324934|gb|EFH55354.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 818

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 96/366 (26%), Gaps = 88/366 (24%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVP--------------------------NLQIFRS 38
           L    Y  QL +K   + QM+                                NL+    
Sbjct: 264 LADLSYADQLEQKKTSIGQMLKKLARNARKACPNGNSLPQWVLTSRDRGGLACNLEGIIE 323

Query: 39  EPI--HYRMRAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMI 88
            PI   YR + EF +         + F   +        +E +        ++   ++  
Sbjct: 324 SPITNGYRNKCEFSVGLSLQGKPTVGFSLGSFCAGVTAVEEPVDCPNVSKIAVQYASIFQ 383

Query: 89  EMMATIRLEPLLR------------------AKLFQIDYLTSQSDQAIV------TLIYH 124
           + +   +L+   R                        +   ++  + ++      T    
Sbjct: 384 KFIEKSKLQVWNRFQHSGFWRQLTVREGRKPGVFSNDEDAITRIAEVMLIVQVCLTDSDE 443

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLI--------------------------GRANKT 158
             +   + E A    +   A    + L                              N T
Sbjct: 444 TEVATEFEEMAKAFAEGARASSPTLPLTVLVVQNHSGISNVAPPDSPLQVLPIPMLDNGT 503

Query: 159 KICLDRDYVDE-RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-EL 216
                 + + E R+      L +     +F Q N      +              LL ++
Sbjct: 504 NQEQTTNALTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYTIAGDWADLGPDTLLFDV 563

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
            CG G   L LA     V+ +E+   +V  A  N   N ++N K +   +   T     E
Sbjct: 564 CCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFICSKACILTITYLAE 623

Query: 277 REFNRL 282
              + L
Sbjct: 624 NVMSSL 629



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 39/114 (34%)

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILSTT-------- 338
           ++     VDPPRSGL  A +  ++ +P +   +YISCNP++L  +   L T         
Sbjct: 705 FKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYISCNPETLVANAIELCTPSFDEADRG 764

Query: 339 ----------------------------HTIERLALFDQFPYTRHMECGVLLVR 364
                                           +    D FP+T H E  +LL R
Sbjct: 765 NKNYRGRKKIGIAALARHRAKSMPTSEAFRPVKAMAVDLFPHTDHCEMVMLLER 818


>gi|329767393|ref|ZP_08258918.1| hypothetical protein HMPREF0428_00615 [Gemella haemolysans M341]
 gi|328836082|gb|EGF85773.1| hypothetical protein HMPREF0428_00615 [Gemella haemolysans M341]
          Length = 171

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILST-THTIERLALF 347
           +   + VD PR G +++ +  + +     I+Y+SCNP +L RD+ I+    + +  +   
Sbjct: 2   KLDAVIVDSPRKGCEESFLRDLASMGIEKIVYVSCNPATLARDMEIMRGLGYKLGAVQPV 61

Query: 348 DQFPYTRHMECGVLLVRKPSGWH 370
           D FP T H+E   LL +     H
Sbjct: 62  DMFPGTYHVETLALLSKLDVDKH 84


>gi|227833269|ref|YP_002834976.1| putative SAM-dependent methyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184253|ref|ZP_06043674.1| putative SAM-dependent methyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454285|gb|ACP33038.1| putative SAM-dependent methyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 430

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 122/373 (32%), Gaps = 79/373 (21%)

Query: 17  KVDRLRQMMLAFQ----VPNLQIFRSEPIH-YRMRAEFHIWHDGDDLYHIMFDQQTKERM 71
           KV  LR  +        VP ++     P   +R R    +   G      +  + + E +
Sbjct: 108 KVAVLRDQLRRVGRLENVPEIEAVDVAPQRGWRTRVRLGVDKQG---RAGVRKRGSTELI 164

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
                   S LI              P L + L      T      ++ +     +D   
Sbjct: 165 TDVAC---SQLI--------------PGLVSGLVGPGARTFSPGAEVIAV-----MDSDG 202

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
               +  R A   R+ +         T+  + R               +     +F Q +
Sbjct: 203 NRHVVETRKAPRGRRVETIRETIEAPTQDVVQR----------ADGHEFHFPPTAFWQAH 252

Query: 192 ---AGINVHMLEWVLAATK-----------GIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
                +   +    LAA              +     +LY G G F   LA     V A 
Sbjct: 253 IGAPDVYTQLARQWLAAEGEAEEHEATRESEVTAVAWDLYGGVGLFVPALA----EVTAP 308

Query: 238 EIAKPSVEAARYNIAAN----HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           E    +V +  Y+ AA      ++++  V   + +  QA                  R  
Sbjct: 309 EGGHTTVYSVDYSPAAAVAQPGLSDID-VHFRTAKVEQAAS-------------QLPRPA 354

Query: 294 TIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFDQF 350
            + +DPPR+G     V  + A     +L+I C+P +  RD++  S   + +ERLA+ + F
Sbjct: 355 RVILDPPRTGAGVEVVEAIAAAAPQRVLHIGCDPATFARDIAAWSERGYCLERLAMVNAF 414

Query: 351 PYTRHMECGVLLV 363
           P T H E   LLV
Sbjct: 415 PGTHHFETLALLV 427


>gi|253744396|gb|EET00610.1| HpaII tiny fragments locus 9c [Giardia intestinalis ATCC 50581]
          Length = 707

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 91/248 (36%), Gaps = 66/248 (26%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV------------------LAATK 207
           Y+ + L      L +R    +F Q N      +L+++                   A   
Sbjct: 456 YITQTLY----NLTFRIGPETFFQSNLAAFTMLLDYISDIIVVILESSSINCNEDRADPS 511

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVL-----------AVEIAKPSVEAARYNIAANHV 256
               +LL++ CG+G     LA+   + +            ++ ++ ++  A +N + N  
Sbjct: 512 CSIVELLDICCGSGVIGQCLAQIVLKKMIDFHDLHVNIKGIDCSQDAIWNADFNASENFK 571

Query: 257 NN----VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +N       V   +++  +      +                  +DPPR+G+    +  +
Sbjct: 572 DNPNISALYVCGKAEQTPEYFSGSAKIG---------------ILDPPRTGVFQNVLTAI 616

Query: 313 Q--AYPHILYISCNPDSLCRDLSILS------------TTHTIERLALFDQFPYTRHMEC 358
           +     +++YISCNP ++ +++  LS                +E L  F+ FP   H+E 
Sbjct: 617 RYSTLEYLIYISCNPKTMSQNIIDLSIVSVDPDASKRTAPFYVESLVGFNMFPGCEHVEA 676

Query: 359 GVLLVRKP 366
             +L R P
Sbjct: 677 VAILHRCP 684


>gi|83314737|ref|XP_730490.1| SAM-dependent methyltransferase [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23490228|gb|EAA22055.1| SAM-dependent methyltransferase related to
           tRNA(uracyl-5-)-methyltransferase [Plasmodium yoelii
           yoelii]
          Length = 600

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 100/258 (38%), Gaps = 32/258 (12%)

Query: 33  LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA 92
             I  S+  HYR ++ FH     D L    + + + E   I+        I  +  ++  
Sbjct: 219 YDIIHSDCYHYRNKSTFHFSVT-DKLSIGFYKRHSYEICDINECYIQDKQIQKIYEDIKN 277

Query: 93  TI-----RLEPLLRAKLFQIDYLTS--------QSDQAIVTLIYHRLLDDAWRECAIRLR 139
            I     +    +  K+    YL S         S+  I+       L +  ++  I + 
Sbjct: 278 EIIDNFKKNNIYIVNKINNNGYLKSVDIKYSVCNSENQILINFIGCTLTNEAKKNMINIA 337

Query: 140 DALHARKYQIQLIGRA---------NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           + +  +   I+ I             K      ++Y+            Y+   N+F QP
Sbjct: 338 NNIAIKNKSIKGILYNVETNKLKQIKKEITLFGQNYIYHTY----NNYTYKLGANTFFQP 393

Query: 191 NAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           N  +N  +++ V    +  + +     + +L+CG G +SL L+  F+ V++V+ +  +++
Sbjct: 394 NQYLNECIIQIVFKLIQNYKINSQTQCVFDLFCGIGFYSLPLSSIFNHVISVDYSIENIK 453

Query: 246 AARYNIAANHVNNVKIVR 263
               NI  N++ N+K + 
Sbjct: 454 NLEENIKLNNIQNIKPIH 471


>gi|308159717|gb|EFO62238.1| tRNA (uracil-5-)-methyltransferase, putative [Giardia lamblia P15]
          Length = 706

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 97/257 (37%), Gaps = 66/257 (25%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA---------- 204
           +   +  L R Y+ + L      L +R    +F Q N      +L+++            
Sbjct: 444 STPMETSLSRFYITQTLY----NLNFRIGPETFFQSNLAAFTMLLDYISDIVVTILESSH 499

Query: 205 --------ATKGIQGDLLELYCGNGNFSLVLARHFDRVL-----------AVEIAKPSVE 245
                   ++  +  +LL++ CG+G     LA+   + +            ++ ++ ++ 
Sbjct: 500 MSFHKDETSSSLLTVELLDICCGSGVIGQCLAQVVLKKMINVQNLHVNIKGLDCSQNAIW 559

Query: 246 AARYNIAANHVNN----VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            A +N + N  +N       +   +++  +      +                  +DPPR
Sbjct: 560 NAEFNASDNFKDNPNISALYICGKAEQTPEYFSGSAKIG---------------ILDPPR 604

Query: 302 SGLDDATVGMVQ--AYPHILYISCNPDSLCR------------DLSILSTTHTIERLALF 347
           +G+  + +  ++     +++YISCNP ++ +            DLS  +    +E L  F
Sbjct: 605 TGVFQSVLTAIRHSTLEYLIYISCNPKTMSQNIIDLSIVSTDSDLSKRTAPFYVESLVGF 664

Query: 348 DQFPYTRHMECGVLLVR 364
           + FP   H+E   +L R
Sbjct: 665 NMFPGCEHVETVAILHR 681


>gi|159118344|ref|XP_001709391.1| HpaII tiny fragments locus 9c [Giardia lamblia ATCC 50803]
 gi|157437507|gb|EDO81717.1| TRMT2A-like protein [Giardia lamblia ATCC 50803]
          Length = 705

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 94/248 (37%), Gaps = 66/248 (26%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA------------------ATK 207
           Y+ + L      L +R    +F Q N      +L+++                    ++ 
Sbjct: 457 YITQTLY----NLNFRIGPETFFQSNLAAFTMLLDYISDIVVTILESSHMSSHKDEISSS 512

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVL-----------AVEIAKPSVEAARYNIAANHV 256
            +  +LL++ CG+G     LA+   + +            ++ ++ ++  A +N + N  
Sbjct: 513 LLTVELLDICCGSGVIGQCLAQVVLKKMINVQNLHVNIKGLDCSQNAIWNAEFNASENFK 572

Query: 257 NN----VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +N       +   +++  +      +                  +DPPR+G+  + +  +
Sbjct: 573 DNPNISALYICGKAEQTPEYFSGSAKIG---------------ILDPPRTGVFQSVLTAI 617

Query: 313 Q--AYPHILYISCNPDSLCR------------DLSILSTTHTIERLALFDQFPYTRHMEC 358
           +     +++YISCNP ++ +            DLS  +    +E L  F+ FP   H+E 
Sbjct: 618 RHSTLEYLIYISCNPKTMSQNIIDLSIVSTDSDLSKRTAPFYVESLVGFNMFPGCEHVET 677

Query: 359 GVLLVRKP 366
             +L R P
Sbjct: 678 VAILHRCP 685


>gi|332202890|gb|EGJ16958.1| TRAM domain protein [Streptococcus pneumoniae GA47901]
          Length = 333

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 76/220 (34%), Gaps = 24/220 (10%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF-QVPNLQI----FRSEPIHYRMRAEFHIWHDGDDLY 59
           L    Y +QL  K  +++  +     + ++++        P+ YR +A+  +      L 
Sbjct: 83  LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAKLFQID 108
              F + +   M ++ F     +I+ +++ +   +R              L+R  + +  
Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202

Query: 109 YLTSQSDQAIVT----LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           + + Q    +VT    +     L +   +    +   +     Q        +      +
Sbjct: 203 HYSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWCTLYGQ 262

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
           DY+ +++        ++    +F Q N  +   + +  + 
Sbjct: 263 DYITDQMLGND----FQIAGPAFYQVNTEMAEKLYQTAID 298


>gi|297818278|ref|XP_002877022.1| hypothetical protein ARALYDRAFT_904929 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322860|gb|EFH53281.1| hypothetical protein ARALYDRAFT_904929 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 512

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 126/430 (29%), Gaps = 105/430 (24%)

Query: 25  MLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN 84
              + V +          +R RA+  +    D+    ++ + T   + I         IN
Sbjct: 77  FKRYGVEDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDIPECKSHHPNIN 136

Query: 85  ALMIEMMATIRLEPL-----------LRAKLFQIDYLTS--------QSDQAIVTLIY-H 124
           A +  +   I++  +           LR     +   ++        ++ +  V+L++  
Sbjct: 137 AAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAPERYKNGKVQVSLVWNS 196

Query: 125 RLLDDAWRECAIRLRDAL-----HARKYQIQLIGRAN----KTKICLDRDY----VDERL 171
           R       +    L   L        K+ +     AN       I     +     +   
Sbjct: 197 RNERSHNADKLQALSSYLWRKGGPNSKFHLIHSVWANFQTSTNNIIFGNRWRHLLGERDF 256

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--R 229
                 +      +SF Q N      +L W L         + +LY G G   L LA  R
Sbjct: 257 WEHVGGIDISLDPSSFGQANTRAFDSLL-WKLHKYVPGGSSVADLYAGAGVIGLSLATSR 315

Query: 230 HFDRVLAVEIAKPSVEAARYNIAA--NHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
               V  +E+ K +  +    I    N V+  +      +             N L  I 
Sbjct: 316 KCSSVKCIEVNKEARLSFEKTIQRLPNSVDCSISWHHADA-----------SVNPLSWI- 363

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYP------------------------------ 316
                   + VDPPR GLD +   M+++ P                              
Sbjct: 364 ---IGSDVVVVDPPRRGLDASLRQMLESVPSIEKRMRSSSQSSSTNAKEEKRPWILRAKE 420

Query: 317 -------------------HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRH 355
                               ++YISC  +S   D   L  S    +E+   F+ FP T  
Sbjct: 421 LSIQAGNKLTPEENNTLPQRLIYISCGWESFKEDCKSLLSSRAWELEKAHGFNFFPGTDS 480

Query: 356 MECGVLLVRK 365
           +E   +  R+
Sbjct: 481 IEVLAVFKRR 490


>gi|298707385|emb|CBJ30020.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 516

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 120/367 (32%), Gaps = 54/367 (14%)

Query: 35  IFRSEPIHYRMRAEFHIWHDGD--DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMA 92
           I   +P  +R  A+           +   ++   +   + I         +N  +  +  
Sbjct: 167 IHPWKPHGWRTLAKLAARPVSKWRGVELGLYSAGSHNVIGIPDCRVHHPSVNLAVKTLQE 226

Query: 93  TI-----------RLEPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIRLRD 140
           +             L+  LR     ++  + Q    +V    + R      +  A  LR 
Sbjct: 227 STKKIGVTGFRQENLDGDLRYVQMAVERTSGQVQLTLVWNEENYRDATPKLQLLAKDLRS 286

Query: 141 ALHARKYQIQLIGRANKTKICLDRD-----------YVDERLTVAGRTLIYRQIENSFTQ 189
           +     + I +  R         RD           Y+ E +  +     +      F Q
Sbjct: 287 SRPELFHSIWVNFRVGVGNAIFSRDPHSWHRCSGPEYLKEVVGPSKIPFFF--SPPLFRQ 344

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA---KPSVEA 246
            N      +++ V+       G + ELY G G   L +A     V   ++      S E 
Sbjct: 345 GNLDHFESIVQAVVDWVPEGSG-VCELYAGVGVLGLNVAAKAAFVRCSDVNSFNPRSFER 403

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           +R  +  N    V    MS+ E  +              D  S   + + VDPPR GLD 
Sbjct: 404 SRKTLPPNVRKRVSFEAMSADEAME--------------DGESEGCEVLIVDPPRKGLDK 449

Query: 307 ATVGMV--------QAYPHILYISCNPDSLCRDL-SILSTTHTIERLALFDQFPYTRHME 357
             +  +        +A   ++Y+SC  D+L RD  +++     +     F  FP + H+E
Sbjct: 450 GVMDALMDPDDPNTEALRRVIYVSCGFDALKRDAMNLIGAGWVLRHSEGFVLFPGSDHIE 509

Query: 358 CGVLLVR 364
              +  R
Sbjct: 510 TFAIFDR 516


>gi|167823861|ref|ZP_02455332.1| 23S rRNA 5-methyluridine methyltransferase [Burkholderia
           pseudomallei 9]
          Length = 84

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 292 FKTIFVDPPRSGL---DDATVGMVQAYP-----HILYISCNPDSLCRDLSIL--STTHTI 341
           F    VDPPR G      A   + Q+        I+Y+SCNP +L RD  +L     + +
Sbjct: 1   FDKFLVDPPREGALAVSKALAEIAQSGAGPLPTRIVYVSCNPSTLARDAGLLVHEAGYRL 60

Query: 342 ERLALFDQFPYTRHMECGVLLVR 364
           +   + + FP+T H+E   L  R
Sbjct: 61  KGAGVVNMFPHTSHVESIALFER 83


>gi|261868606|ref|YP_003256528.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413938|gb|ACX83309.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 165

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 28/178 (15%)

Query: 198 MLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFD--------RVLAVEIAKPSVEAAR 248
           M        + +    L +L+CG G F L   +           R+  +EI+  ++ AA 
Sbjct: 1   MYGTAQQWVQDLPINTLWDLFCGVGGFGLHCLQALQQRHTQKTLRLTGIEISASAIAAAT 60

Query: 249 YNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            +     +   +    + +  F                   + +   I V+PPR G+   
Sbjct: 61  LSAQQLGLAEQLSFQSLDAANFALT---------------QAEKPDLIIVNPPRRGVGKT 105

Query: 308 TVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
               + A     ILY SCN +++ +DL  L+  +  E++ LFD FP+T H E  VLL 
Sbjct: 106 LAEFLNAMQPHFILYSSCNAETMGKDLQSLTH-YQSEKIQLFDMFPHTAHYEVLVLLK 162


>gi|4432832|gb|AAD20681.1| putative RNA methyltransferase [Arabidopsis thaliana]
          Length = 850

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 92/346 (26%), Gaps = 88/346 (25%)

Query: 9   QYEQQLAEKVDRLRQMMLA--------FQVP---------------------NLQIFRSE 39
            Y  QL +K   + QM+          F++                        +     
Sbjct: 281 SYADQLEQKKTSIGQMLKKLVRSFVFLFELVRGMRVKLVQMGIHFHNGSLHRETEGIIES 340

Query: 40  PI--HYRMRAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMIE 89
           PI   YR + EF +         + F   +        +E +        +    ++  +
Sbjct: 341 PITNGYRNKCEFSVGLSLQGKPTVGFSLGSFCAGVTAVEEPVDCPNVSKIASQYASIFQK 400

Query: 90  MMATIRLEPLLR------------------AKLFQIDYLTSQSDQAIVTL---IYHRLLD 128
            +   + +   R                        +   ++  + ++ +   + +  + 
Sbjct: 401 FIENSKFQVWNRFQHSGFWRQLTVREGRKPGVFSNDEDAITRIAEVMLMVQVCVLNGKVA 460

Query: 129 DAWRECAIRLRDALHARKYQIQLI---------------GRANKTKICL-----DRDY-- 166
             + E A    +   A    + L                  A    + +       D   
Sbjct: 461 TEFEELAKAFAEGARASSPTLPLTVLVVQNHSGISNVAPPDAPLQVLAIPISDNGTDQEQ 520

Query: 167 -----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGN 220
                 + R+      L +     +F Q N      +              LL ++ CG 
Sbjct: 521 TTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPDTLLFDVCCGT 580

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           G   L LA     V+ +E+   +V  A  N   N ++N K +   +
Sbjct: 581 GTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFICSKA 626



 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 39/138 (28%)

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI---LYIS 322
            +E     +++      +      ++     VDPPRSGL  A +  ++ +P +   +YIS
Sbjct: 713 VEELQDNEQKDSSSLEPEKTTKPQFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYIS 772

Query: 323 CNPDSLCRDLSILSTT------------------------------------HTIERLAL 346
           CNP++L  +   L T                                         +   
Sbjct: 773 CNPETLVANAIELCTPSFDEPDRGNKNYRGRKKIGIAALARHRAKSMPTSEAFRPVKAMA 832

Query: 347 FDQFPYTRHMECGVLLVR 364
            D FP+T H E  +LL R
Sbjct: 833 VDLFPHTDHCEMVMLLER 850


>gi|254361846|ref|ZP_04977981.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213]
 gi|153093381|gb|EDN74377.1| tRNA (uracil-5-)-methyltransferase [Mannheimia haemolytica PHL213]
          Length = 301

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 97/290 (33%), Gaps = 35/290 (12%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF----QVPNLQIFRSEPIHYRMRAEFHIWHDGDD 57
           S   +   Y  QLA K   L++++L F    +   L +  S    +R +A+  +    + 
Sbjct: 17  SCQWIEKPYSTQLAAKEADLKRLILPFILQNKTEILPLVGSPISQFRNKAKMVVSGSVER 76

Query: 58  LYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMMATIRLEPLL-------RAKLFQID 108
               +   Q   +  + +   +      + L   +   I    L+       + +L  I 
Sbjct: 77  PILGILKDQNDAQSGVDLTDCLLYPSSFHRLFPILKDFIARAGLVPYNISKKKGELKYIL 136

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIR----LRDALHA---RKYQIQLIGRA---NKT 158
              SQ +Q+ +     R   +A R    R    L + L         IQ    A    +T
Sbjct: 137 ITESQYNQSFMLRFVVR--SEAKRALVERELPELLEKLPPNSVVSLNIQPQHAALLEGET 194

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELY 217
           +I L    V E        +        F Q N  +   +     +  + +    L +L+
Sbjct: 195 EIFLTEQKVLEE---HFNGIPLFIRPQGFFQTNPVVASQLYHTAQSWIEHLPIAKLWDLF 251

Query: 218 CGNGNFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           CG G F L  A           +  +EI+  ++ +A  +     +  VK 
Sbjct: 252 CGVGGFGLHCANALQAKNSNVELTGIEISASAIASATKSAEKLGLKQVKF 301


>gi|169348419|ref|ZP_02866357.1| hypothetical protein CLOSPI_00134 [Clostridium spiroforme DSM 1552]
 gi|169293888|gb|EDS76021.1| hypothetical protein CLOSPI_00134 [Clostridium spiroforme DSM 1552]
          Length = 433

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 131/389 (33%), Gaps = 55/389 (14%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
             TLL   Y +QL EK + +R+ +  +   NL+       I   +   +       I   
Sbjct: 75  GCTLLHLNYYKQLTEKKEAIREAIRKYTNYNLEETVFKDVIASPKQEGFITSVNLPIVEF 134

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM------MATIRLEPLLRAKLFQID 108
              +   ++ + +K    +      + LIN  ++ +                +  L  I 
Sbjct: 135 KGKITFGIYQRNSKYLTLMTKCFKQNPLINETLVALEGILTRNHCKIYNDKFKTGLRFIK 194

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA----LHARKYQIQLIGRANKTKICLDR 164
                    +V +     L+D   +   +L       +     + Q    A  TK+    
Sbjct: 195 IKLVDKKLQLVFITGRDGLNDEVVKEISKLTSVASIYMSVNTSKHQEFDDAGYTKL---- 250

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW-----VLAATKGIQGDLLELYCG 219
            Y   RL + G    Y     S       +  ++L +      +         ++ L CG
Sbjct: 251 -YGLSRLEMVGNDKKYLVSIKS------KLPENILAYNKQISCMKTMLEDSNKIISLNCG 303

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G   + L      V+A++  K  +E A+ N       NV  V  S         +++ +
Sbjct: 304 IGLLEMEL---DQEVIAIDEKKYHIEDAKINNKR--KENVIFVAGSIDNKIVVYAKKKIY 358

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP-DSLCRDLSILS 336
                         T+ +   R GL D     ++      I+Y SC    +L +DL+ L 
Sbjct: 359 -------------DTLVIQNERFGLSDTVKNSIKIAKIKTIVY-SCQSYSTLAKDLADLE 404

Query: 337 TTHTIERLALFDQFPYTRHMECGVLLVRK 365
            ++ +ER+   D   +  ++   V LVRK
Sbjct: 405 NSYRLERIVAIDSSCHNSYLTTIVKLVRK 433


>gi|289810736|ref|ZP_06541365.1| 23S rRNA methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 145

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLAR 229
           L      +       SF Q N  +   +          +    + +L+CG G F L  A 
Sbjct: 11  LAERFNDVPLWIRPQSFFQTNPTVASRLYATARDWVGQLPVRHMWDLFCGVGGFGLHCAT 70

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              ++  +EIA  ++  A+ + A   +  +    + S +F  A                 
Sbjct: 71  PQMQLTGIEIAPEAIACAKQSAAELGLTRLHFQALDSTQFATA---------------QG 115

Query: 290 YRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
                + V+PPR G+       + Q  P  
Sbjct: 116 ETPDLVLVNPPRRGIGKPLCDYLAQMAPRF 145


>gi|262202192|ref|YP_003273400.1| SAM-dependent methyltransferase [Gordonia bronchialis DSM 43247]
 gi|262085539|gb|ACY21507.1| SAM-dependent methyltransferase related to tRNA
           (uracil-5-)-methyltransferase-like protein [Gordonia
           bronchialis DSM 43247]
          Length = 443

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/217 (20%), Positives = 75/217 (34%), Gaps = 25/217 (11%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL----AATKGIQ 210
              T++       + R+     T  ++     F Q +        + V            
Sbjct: 244 ERATRVVEGAGVAEHRVG----TRAWQIPVTGFWQAHREAPATYADAVAGFAARHLDRSP 299

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G   +LY G G F+  L  +       ++A  SV             +   +  ++  F 
Sbjct: 300 GVAWDLYGGAGVFAAALLDN------PDVAPGSVHVVDA--------DTGALTAAAATFA 345

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ-AYPH-ILYISCNPDSL 328
              R       + +          + +DPPR+G  +  V  +  A P  I++I C+    
Sbjct: 346 GDNRVITHPGEVIEQIEALPAPDVVVLDPPRTGAGEKVVTAISDARPQVIIHIGCDAARF 405

Query: 329 CRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
            RDL +  +  + I  L  FD FP T H+E    LVR
Sbjct: 406 ARDLGLFVTHGYRIAELRGFDAFPLTHHVEVIACLVR 442


>gi|42565237|ref|NP_189354.2| unknown protein [Arabidopsis thaliana]
 gi|190341123|gb|ACE74720.1| At3g27180 [Arabidopsis thaliana]
 gi|332643755|gb|AEE77276.1| S-adenosylmethionine-dependent methyltransferase-domain containing
           protein [Arabidopsis thaliana]
          Length = 518

 Score = 99.3 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 126/434 (29%), Gaps = 105/434 (24%)

Query: 18  VDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFM 77
           VD        + V +          +R RA+  +    D+    ++ + T   + I    
Sbjct: 71  VDEASDFFKRYGVDDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDIPECK 130

Query: 78  PGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTS--------QSDQAI 118
                INA +  +   I++  +           LR     +   ++        ++ +  
Sbjct: 131 SHHPNINAAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAPERYKNGKVQ 190

Query: 119 VTLIY-HRLLDDAWRECAIRLRDAL-----HARKYQIQLIGRAN----KTKICLDRDY-- 166
           V+L++  R       +    L   L        K+ +     AN       I     +  
Sbjct: 191 VSLVWNSRNERSHNADKLQALSTYLWRKGGPNSKFHLIHSVWANFQTSTNNIIFGNRWRH 250

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
              +         +      +SF Q N      +L W L         + +LY G G   
Sbjct: 251 LLGERDFWEHVGGIDISLDPSSFGQANTRAFDSLL-WKLHKYVPGGSSVADLYAGAGVIG 309

Query: 225 LVLA--RHFDRVLAVEIAKPSVEAARYNIAA--NHVNN-VKIVRMSSKEFTQAMRREREF 279
           L LA  R    V  +E+ K +  +    I    N +N  +      +             
Sbjct: 310 LSLATSRKCSSVKCIEVNKEARLSFEKTIQRLPNSLNCSISWHHADA-----------SV 358

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP----------------------- 316
           N L  I         + VDPPR GLD +   M+++ P                       
Sbjct: 359 NPLSWI----IGSDVVVVDPPRRGLDASLRQMLESVPSIEKRMRSSSQSSSLNAKEEKRP 414

Query: 317 --------------------------HILYISCNPDSLCRDLSIL--STTHTIERLALFD 348
                                      ++YISC  +S   D   L  S    +E+   F+
Sbjct: 415 WILRAKELSIQAGNKQTSEENNTLPQRLIYISCGWESFKEDCKSLLSSRAWELEKAHGFN 474

Query: 349 QFPYTRHMECGVLL 362
            FP T  +E   + 
Sbjct: 475 FFPGTDSIEVLAVF 488


>gi|167754600|ref|ZP_02426727.1| hypothetical protein CLORAM_00102 [Clostridium ramosum DSM 1402]
 gi|237733764|ref|ZP_04564245.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705432|gb|EDS20011.1| hypothetical protein CLORAM_00102 [Clostridium ramosum DSM 1402]
 gi|229383102|gb|EEO33193.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 435

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 125/385 (32%), Gaps = 45/385 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
             T+L   Y +QL  K + +R+ +  +   +L        I       +       I   
Sbjct: 75  GCTMLHLSYFKQLNAKKEAVRESIRKYTEYDLSRTIFKDVIAAPSQEGFITAVNLPIVDF 134

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE------PLLRAKLFQID 108
              +   ++ + +K    +        +IN  ++++   +            R  L  + 
Sbjct: 135 KGKISFGIYQRDSKYLTLMTRCFKQHPIINECLLKLEEILTTNKCKTYSDKFRTGLRFLK 194

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK---ICLDRD 165
                +   +V +       D  +E  ++    L         +  +   +   +   + 
Sbjct: 195 VKLIDNKLQLVFITG----RDGLKEEIVKEISQLPHVASIFMSVNTSKHQEFDELGYSKL 250

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML---EWVLAATKGIQGDLLELYCGNGN 222
           Y   RL +      Y     S        N+ M+      + +       ++ L CG G 
Sbjct: 251 YGATRLELHDDKNQYLVSVKSKL----PENIEMMWKQNQTIKSLVQDSQKIISLNCGIGL 306

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
             L L      ++A++  +  ++ A+ N       NV  +            +++     
Sbjct: 307 LELNL---DQEIVAIDEKRYQIDDAKLNAKYLKKENVTFIAGDLDSKIVTYAKKK----- 358

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHT 340
                    + T+ +   R GL D     ++   +  I+Y   +  +L +DL+ L   + 
Sbjct: 359 --------VYDTLIIQNERYGLSDTIKDTIKIAKFKTIIYACQSHSTLAKDLADLEKNYK 410

Query: 341 IERLALFDQFPYTRHMECGVLLVRK 365
           +ER+   D   +  ++   V LVRK
Sbjct: 411 LERIIGLDTSCHNSYLTTIVKLVRK 435


>gi|325068656|ref|ZP_08127329.1| RNA methyltransferase [Actinomyces oris K20]
          Length = 88

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS-ILSTTHTIERLA 345
             R   + +DPPR G     +  V A     I+ ++C+P +L RDL  +L + +T+  ++
Sbjct: 9   GGRPDVVVLDPPRQGAGREVIEAVGALGAERIVLVACDPAALARDLGTLLRSGYTLGSMS 68

Query: 346 LFDQFPYTRHMECGVLLVR 364
             D FP+T H E   +L R
Sbjct: 69  ALDMFPHTHHFETIAVLER 87


>gi|219113673|ref|XP_002186420.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583270|gb|ACI65890.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 475

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 122/400 (30%), Gaps = 67/400 (16%)

Query: 18  VDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFM 77
           V +         VPN  +F      +R  A+  + +  ++L   +F   +   + +    
Sbjct: 86  VQKAVHFFAQQNVPNFTVFCGPAKAWRTVAKLAVRNVNNELTVGLFAPGSHNLVAVPDCP 145

Query: 78  PGSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTSQSDQAIVTLIYHRL 126
                +N  +  +  T R   +           LR     ++  T      +V     + 
Sbjct: 146 AHHPSVNCTVDVLQETARRSGIRAFDEVTGTGNLRHVAINVERATGSVQLTLVWKFTDQP 205

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL------------------------ 162
            D    +      D L  +K   Q      ++ + L                        
Sbjct: 206 ADATTNKEESEALDRL-CKKLIQQGTSSKGESSLTLHSLWVHYNAAWKHDNAIFNHTGRW 264

Query: 163 ----DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV------LAATKGIQGD 212
                   + E L +    +  +   N F Q N      ++  +       A+       
Sbjct: 265 EHRHGPKSIVENLAIDDLKIPLQFPPNVFRQANLDAFTGIIRKIRNVLQERASLSAAPPA 324

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFT 270
            +ELY G G   L +A     +++ +    +       +    V++  V    +++ E  
Sbjct: 325 CVELYGGVGTLGLHVADLCRSLVSSDENPHNKACFEETVRQMKVSDGSVSYKSLNATEMV 384

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDS 327
            +         L + D        I VDPPR GLDD  +G +        ++Y+SC  D+
Sbjct: 385 NS-------GVLNEADW-------IVVDPPRKGLDDVVLGAMAEVTRPQILVYVSCGFDA 430

Query: 328 LCRDLSILSTT--HTIERLALFDQFPYTRHMECGVLLVRK 365
             RD   L       +        FP +  +E     VR+
Sbjct: 431 FQRDCKYLVQHGQWEVLHAEGHILFPGSDAIETLAFFVRR 470


>gi|315612146|ref|ZP_07887061.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
 gi|315315707|gb|EFU63744.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
           ATCC 49296]
          Length = 76

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 295 IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   + ++ +   D FP+
Sbjct: 1   MIVDPPRTGLDDKLLDTILTYVPDKMVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPH 60

Query: 353 TRHMECGVLLVRK 365
           T   E  V LV+K
Sbjct: 61  TARTEAVVKLVKK 73


>gi|322375229|ref|ZP_08049743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
 gi|321280729|gb|EFX57768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
           C300]
          Length = 76

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 295 IFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + VDPPR+GLDD  +  +  Y    ++Y+SCN  +L RDL  L   + ++ +   D FP+
Sbjct: 1   MIVDPPRTGLDDKLLETILTYVPDKMVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPH 60

Query: 353 TRHMECGVLLVRK 365
           T   E  V LV+K
Sbjct: 61  TARTEAVVKLVKK 73


>gi|242018109|ref|XP_002429523.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
           corporis]
 gi|212514471|gb|EEB16785.1| HpaII tiny fragments locus 9c protein, putative [Pediculus humanus
           corporis]
          Length = 1002

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 132/388 (34%), Gaps = 70/388 (18%)

Query: 32  NLQIFRSEP--IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE 89
            ++  ++ P    YR + +F +  + +    + F     E  +I    PG  LI+     
Sbjct: 419 KIEPLKTSPILQGYRNKCKFRVGKNIEGKTTVGFCLNDNEN-KILGVRPGDKLIHLPDSM 477

Query: 90  MMATIRLEPLLRA----------KLFQIDYLTSQSDQ----AIVTLIYHRLL-DDAWREC 134
             A  + E  +R           K    D++T ++       +V ++YH  L D++  E 
Sbjct: 478 KYAAKKFEDFIRTSGKEPFVKKQKSGFWDHITIRTTPEGSLMLVVVMYHNNLSDESIIEI 537

Query: 135 AIRLRD----------ALHARKYQIQ----LIGRANKTKICLDRDYVDERLTVAGRTLIY 180
             ++R+           LH+  +        +    K ++     +  E +      L +
Sbjct: 538 KNQVREYFVNGEGRDCKLHSLYFHTMYDKYPVPPREKLELLHGETHFLENIC----GLKF 593

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEI 239
                S    N+  + ++   ++         + L+L  G G  +  +A     V+A+E 
Sbjct: 594 YVGPFSILNVNSSSSENIYNSIIELADPTPETIILDLCSGTGGIAFTIANRCKNVIAIES 653

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
               +  A      N++ NV+ ++   ++        + F+RL              +DP
Sbjct: 654 HSDHINYALKTKELNNIQNVEFIKGKVED-----ELGKVFDRLG-----GDVPIIPIIDP 703

Query: 300 PRSGLDDATVGMVQAYPHI---LYISCNPDSLCRDLSILST------------------- 337
           PR GL    +  ++A  +I   +Y+  N     +++  L                     
Sbjct: 704 PRQGLVQKAISQLRANENIKKLVYVCSNSKMGAKNILDLCAAADRKEGTLGNPLNVIFSG 763

Query: 338 -THTIERLALFDQFPYTRHMECGVLLVR 364
                 R    D  PYT +    +L  R
Sbjct: 764 LPFLPVRAIPIDVAPYTVNNTIVILFER 791


>gi|154286016|ref|XP_001543803.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150407444|gb|EDN02985.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 475

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 111/360 (30%), Gaps = 89/360 (24%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIF------RSEP--IHYRMRA--EFHI 51
              L +  YE QL  K   L +    F     ++        + P    YR +    F +
Sbjct: 154 GCQLQMLPYEDQLKHKRKILEKAYANFSGLLPELIPAIRDTMASPLQYGYRTKLTPHFPM 213

Query: 52  ----------WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
                       + +        +  +  + I+    G+ ++          + ++   R
Sbjct: 214 PTRIQRGSADGEESEIPPIGFMLKGRRTVIDIEDCPLGTDIVR---------LGMKHPGR 264

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
                 +  +S+  Q +      R     + E    + D               N T I 
Sbjct: 265 RSPNGTERASSEERQPVHDEPVIRREHPDYIEEKRCITDQ--------------NSTSI- 309

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI----NVHMLEWVLAATKGIQGD----- 212
              +YVD           ++     F Q N  I      ++ E  L              
Sbjct: 310 ---EYVD--------NYKFQNKAGQFFQNNNSILAPFTQYIRENALLPPSTSSSSPSSSS 358

Query: 213 ----------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                     LL+ Y G+G F++ L+  F   L ++I+  S+EAAR N  AN + N    
Sbjct: 359 ATQRTSKLKYLLDAYSGSGLFTVTLSPIFLSSLGIDISADSIEAARRNARANKLANTGF- 417

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--HILY 320
                               KD+     +   + +DPPR G D+  +  + +Y    ++Y
Sbjct: 418 -----------AAADAAAIFKDVPYPPDK-TLLVIDPPRKGCDNNFLQQLLSYGPAKVVY 465


>gi|309807711|ref|ZP_07701648.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169042|gb|EFO71123.1| conserved hypothetical protein [Lactobacillus iners LactinV 01V1-a]
          Length = 84

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLSILSTTHTIERLA 345
                  + VDPPR+GL+   V  +        +YISCNP +L RDL +LS  + +  + 
Sbjct: 4   DGIAIDALIVDPPRTGLNKQLVKTLLTCKPKDFVYISCNPSTLARDLVLLSQAYDVRLIQ 63

Query: 346 LFDQFPYTRHMECGVLLVRKP 366
             D  P T   E    LV + 
Sbjct: 64  PVDMMPQTPRWEGIAKLVLRK 84


>gi|145344558|ref|XP_001416797.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577023|gb|ABO95090.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 441

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 119/376 (31%), Gaps = 57/376 (15%)

Query: 34  QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDY---FMPGSLLINA----- 85
           + +R     +R++A+        +    +F + +     ID        ++ +       
Sbjct: 79  ETYRGRATRWRVKAKLAARAHEGETRLGLFARGSHALEPIDDASGCAVSAIAVERAMALV 138

Query: 86  ------LMIEMMATIRLEPLLRAKLF--------QIDYLTSQSDQAIVTLIYH-RLLDDA 130
                 + ++          LR            Q D    +  +A ++L+++ R +   
Sbjct: 139 REVCASMDVKGYDETTGNGELRYAQIVAQTRTAGQWDAAKDEDARAAISLVWNARKMTPR 198

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD------ERLTVAGRTLIYRQIE 184
                  +        +   +  +  +  +  + D         E  +          + 
Sbjct: 199 AMAVCEEIARRGGDFVHGTWVNAQDARNNVIFNNDGWHHATGERETHSYTPNGAKVFYLP 258

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL----ARHFDRVLAVEIA 240
            SF Q NA     +L+  +         ++E+Y G G     L    A     +  VE +
Sbjct: 259 GSFMQANAEAYGELLKR-MPRHVPKNARVVEMYAGVGAIGFSLLTNDALGVKSLRCVESS 317

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-FKTIFVDP 299
             +V  A            +  R    E  +  R   +  + + I + S +    + VDP
Sbjct: 318 -SAVAEAW-----------ERTRGELPEDLRG-RASLQVEKAERIAVESTKDCDVLIVDP 364

Query: 300 PRSGLDDATVGMVQAYP-------HILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
           PR GLD     ++            +LY+SC  +S  RD   L  S    I     F  F
Sbjct: 365 PRKGLDAKLRAVLTDVDGLSDDLQTLLYVSCGFESFMRDSDELLASGVWQIRHHESFVFF 424

Query: 351 PYTRHMECGVLLVRKP 366
           P T H+E   +  R P
Sbjct: 425 PGTNHIEIFAVFSRTP 440


>gi|168023511|ref|XP_001764281.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684433|gb|EDQ70835.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 457

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/427 (14%), Positives = 127/427 (29%), Gaps = 97/427 (22%)

Query: 22  RQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSL 81
           R       VP+  +     + +R RA+  +    ++    +F++ T   + I        
Sbjct: 20  RAYFAGRGVPSFSLASGSLVEWRCRAKLAVRGTAENPQIGLFEEGTHSIVDIPSCRTHHP 79

Query: 82  LINALMIEMMATIRL------EPLLRAKLFQIDYLTSQS-----------DQAIVTLIYH 124
            IN  +  +   IR       +        +   +T+ +            +  ++L+++
Sbjct: 80  SINDAVKLVKQAIRDLGVQPYDENRHTGELRYMVVTTLNTSIPVEERYARGKVQISLVWN 139

Query: 125 RLLDDAWRECAIRLRDALHARK----------YQIQLIGRANKTKICLDRDY----VDER 170
               D+ ++  +R    +  R+          + +    + ++T + L   +     +  
Sbjct: 140 ARDSDSVQDDKLRKMAEMIWRRGNSKADLPIVHSVWANFQTSRTNVILGGRWRHLMGESE 199

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-- 228
           L      +       SF Q N      +L   +     +   ++ELY G G   L LA  
Sbjct: 200 LWERVGGVDIAFTPASFGQANTQAFEALLRR-MQKVVKVGSRVVELYAGVGAIGLSLAAT 258

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R    V  VE+ K +      ++     +    +     + + +     E          
Sbjct: 259 RKCRVVKCVEVNKEAKPVFERSLTRLPPSVNAEISWHCADVSVSPINWLE---------- 308

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ----------------------AYPHIL------- 319
                 + VDPPR GLD   V  ++                        P I+       
Sbjct: 309 --GSDVVIVDPPRKGLDLPVVEALRLAAFRGLGKKKAPSSKTTEKVEKRPWIVRAKQSGV 366

Query: 320 --------------------YISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHME 357
                               Y+SC   +   D   L       ++    F+ FP T  +E
Sbjct: 367 HKEGTLDWEEDDGVWPGTLIYVSCGWQAFKLDHDALVEGNAWHLDTAHAFNFFPGTNSIE 426

Query: 358 CGVLLVR 364
              +  R
Sbjct: 427 ILAVFKR 433


>gi|242055403|ref|XP_002456847.1| hypothetical protein SORBIDRAFT_03g044000 [Sorghum bicolor]
 gi|241928822|gb|EES01967.1| hypothetical protein SORBIDRAFT_03g044000 [Sorghum bicolor]
          Length = 520

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 121/410 (29%), Gaps = 82/410 (20%)

Query: 19  DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP 78
             +        V +    R     +R RA+  +    ++    ++ + T + + I     
Sbjct: 113 QEVANFFKGHGVGDFTFSRGRLSQWRCRAKLAVRGTPENPLIGLYQEGTHDVIDIPECRA 172

Query: 79  GSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR----LL 127
               INA +  +   I         E     +L  +    +  + +I     +      +
Sbjct: 173 HHPSINAAVKLLRQGITELGIQPFDEDAGTGELRYVQMAVTTYNTSIPVDKRYEQGKVQI 232

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
              W     R ++A   +   +  I   +K +       + ER      +L       SF
Sbjct: 233 SLVWNSRDERSQNA--EKLISLIEIIFGHKWRHLKGERDLWERYGGVDISL----DPCSF 286

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVE 245
            Q N      +L   L         +++LY G G   L +A  R    V  VEI K S  
Sbjct: 287 GQANTLSFNSLLHK-LNKYVPRGSTVVDLYSGAGVIGLSVAASRKCRSVKCVEINKQSKM 345

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           +   + +    N    +   + + +       E                + VDPPR GL 
Sbjct: 346 SFETSASRLPANLGCTITWHNTDASVEPVHWLE------------GSSVVIVDPPRKGLH 393

Query: 306 DATVGMVQ----------------------AYPHI------------------------- 318
            + +  +Q                        P I                         
Sbjct: 394 PSVISALQKVALSERKAYKAKSSLAKVKDEKRPWILRAREAAVHVDSTTTEEGSETWPET 453

Query: 319 -LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365
            +YISC  +S  +D   L  S    +E    F+ FP T  +E   +  R+
Sbjct: 454 LIYISCGWESFKKDCKSLISSKAWQLENAHAFNFFPGTDSIEILAIFKRE 503


>gi|213612917|ref|ZP_03370743.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 55

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/53 (77%), Positives = 46/53 (86%)

Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           MVQAYP ILYISCNP++LC++L  LS THT+ RLALFDQFPYT HMECGVLL 
Sbjct: 1   MVQAYPRILYISCNPETLCKNLETLSQTHTVSRLALFDQFPYTHHMECGVLLT 53


>gi|218189624|gb|EEC72051.1| hypothetical protein OsI_04960 [Oryza sativa Indica Group]
          Length = 585

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 120/426 (28%), Gaps = 101/426 (23%)

Query: 19  DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP 78
             +        V +    R     +R RA+  I    ++    ++ + T     I     
Sbjct: 165 QEVENFFKGHGVGDFTFSRGRLREWRCRAKLAIRGTPENPLIGLYQEGTHAVADIPECRA 224

Query: 79  GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS--------QSDQAIVTLIYHRLLDDA 130
               I+ L IE          LR     +    +        +  +  V+L+++   + +
Sbjct: 225 ----ISELNIEPFDEDASTGELRYVQMAVTTYNTSIPVAKRYEQGRVQVSLVWNSRDERS 280

Query: 131 WRECAIRLRDALHARK------------------YQIQLIGRANKTKICLDRDYVDERLT 172
                + L      R                        I   +K +  +  + + ER  
Sbjct: 281 KNAEKLSLLSEFLWRNGGPRSNVHLIHSIWANFQTSTSNIIFGHKWRHLIGENDLWERYG 340

Query: 173 VAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--R 229
               +L       SF Q N    N  +    L         +++LY G G   L LA  +
Sbjct: 341 GVDISL----DPYSFGQANTLSFNALL--HTLNKYVPRGSTVVDLYSGAGVIGLSLAASK 394

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V  VEI K S  +   + +    N    +   + + +       E           
Sbjct: 395 KCRSVKCVEINKLSKMSFEKSASRLPPNLGCTITWHNTDASVEPVHWLE----------- 443

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQ----------------------AYPHI--------- 318
                + VDPPR GL  + +  +Q                        P I         
Sbjct: 444 -GSSVVIVDPPRKGLHPSVICALQKVALSERKAYKAKSTLTKVKDEKRPWILRAREAAVQ 502

Query: 319 -----------------LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECG 359
                            +YISC  DS  +D   L  S    ++    F+ FP T  +E  
Sbjct: 503 VDSTPLEGSSETWPETLIYISCGWDSFKKDCKSLMSSKAWHLQNAHAFNFFPGTDSIEVL 562

Query: 360 VLLVRK 365
            +  R+
Sbjct: 563 AIFKRE 568


>gi|167957196|ref|ZP_02544270.1| RNA methyltransferase, TrmA family protein [candidate division TM7
           single-cell isolate TM7c]
          Length = 130

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 25/140 (17%)

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A    RVL        +   + NI   +  N K +   S++  + +  E           
Sbjct: 12  ADKGLRVL-------MLAEMQRNITKLNRANAKAILAPSEKSLEYITGE----------- 53

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
                + + VDPPR+GL    V  +     P I+Y+SCNP +  RD+S+L   + I    
Sbjct: 54  -----QIVIVDPPRAGLHADVVRRLLETTPPRIIYLSCNPVTQARDVSLLQEKYEITHHQ 108

Query: 346 LFDQFPYTRHMECGVLLVRK 365
            ++ FP T H+E  V+L RK
Sbjct: 109 GYNFFPRTPHIEHLVILDRK 128


>gi|156102601|ref|XP_001616993.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805867|gb|EDL47266.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 763

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 105/251 (41%), Gaps = 24/251 (9%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
           S+  +YR ++  ++    D L    + + + E   +D        I  +  ++   I   
Sbjct: 275 SDDYYYRNKSSINLSVT-DHLSIGFYKRHSYEICDVDKCHIHDEHIQNVYEQVKKEILDN 333

Query: 98  -----PLLRAKLFQIDYL--------TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA 144
                  +  K+    YL         S ++Q I+       L+D  ++   ++   L A
Sbjct: 334 FKKNYIYIFNKINNSGYLKSVDIKLSRSDTEQQILVSFVGFSLNDKAKKALTKISLKLGA 393

Query: 145 RKYQIQLIGRANKT-KICLDRD----YVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
           +   I+ I    +T K+  +R+    Y    +  +     Y+   N+F QPN  +N  ++
Sbjct: 394 KNTSIKGILYNVETNKLKQNRNEVTLYGQNCIYHSCGGYTYKLGANTFFQPNQHLNECIV 453

Query: 200 EWVLAA-----TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           + +L           Q  + +L+CG G +SL L+  F +V++V+ +  +++    N+  N
Sbjct: 454 QIILKLVRSYKINAKQSCVYDLFCGIGFYSLPLSDLFGQVISVDYSIDNIKNLEENVKMN 513

Query: 255 HVNNVKIVRMS 265
           +V NVK   ++
Sbjct: 514 NVKNVKCFNLN 524



 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 11/112 (9%)

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +  + K   + S +  +A    REF               + ++PPR G +      ++ 
Sbjct: 626 NAPDGKFPTVDSNKVDEASYSSREF--------VIPVPDLVIINPPRKGCEKVFRRWLRG 677

Query: 315 --YPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLV 363
               +I+YISCN +S  RD++ LS   + +  +   D FP T H E   LL 
Sbjct: 678 LCCRYIIYISCNANSQFRDINHLSNLGYMVREIIPLDTFPRTPHFETVALLE 729


>gi|221060771|ref|XP_002261955.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193811105|emb|CAQ41833.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 751

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 96/255 (37%), Gaps = 32/255 (12%)

Query: 38  SEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE 97
           S   HYR ++  ++    D+L    + + + E   +D        I  +  ++   I   
Sbjct: 267 SNDYHYRNKSSINLSVT-DNLSIGFYKRHSYEICDVDKCHIHDEHIQNVYEQVKKEILDN 325

Query: 98  -----PLLRAKLFQIDYLTS---------QSDQAIVTLIYHRLLDDAWRECAI---RLRD 140
                  +  K+    YL              Q +++ I   L D A +        L  
Sbjct: 326 FKKNYIYVFNKINNSGYLKGVDIKVSKNNAELQILISFIGFSLNDKAKKALTKISLNLAS 385

Query: 141 ALHARKYQIQLI-----GRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
              + K  I  +      +     I   ++     +  +     Y+   N+F QPN  +N
Sbjct: 386 KNTSIKGIIYNVETNKLKQNRNEVILYGQN----CIYHSCGGYTYKLGANTFFQPNQYLN 441

Query: 196 VHMLEWVLAA-----TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +++ +L           Q  + +L+CG G +SL L+  F +V++V+ +  +++    N
Sbjct: 442 ECIVQIILKLVKNYKINAKQACVYDLFCGIGFYSLPLSDLFGQVISVDYSIDNIKNLEEN 501

Query: 251 IAANHVNNVKIVRMS 265
           +  N+V NVK   ++
Sbjct: 502 VKMNNVKNVKCFNLN 516



 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 292 FKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILST-THTIERLALFD 348
              + ++PPR G +      ++     +I+YISCN +S  RD++ L+   + ++ +   D
Sbjct: 647 PDLVIINPPRKGCEKVFRRWLRGLCCRYIIYISCNANSQFRDINHLTNLGYVVKEIIPLD 706

Query: 349 QFPYTRHMECGVLLV 363
            FP T H E   LL 
Sbjct: 707 TFPRTPHFETVALLE 721


>gi|302798070|ref|XP_002980795.1| hypothetical protein SELMODRAFT_154083 [Selaginella moellendorffii]
 gi|300151334|gb|EFJ17980.1| hypothetical protein SELMODRAFT_154083 [Selaginella moellendorffii]
          Length = 572

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 128/426 (30%), Gaps = 104/426 (24%)

Query: 25  MLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN 84
               ++  LQ+  S    +R RA+  +    DD +  +F++ +   + I         IN
Sbjct: 151 FQKRRIAKLQLIPSATHGWRCRAKLAVRGTSDDPFVGLFEEHSHSIVDIPECRAHHPSIN 210

Query: 85  ---ALMIEMMATIRLEPL--------LRAKLFQIDYLTSQ--------SDQAIVTLIY-- 123
               L+  ++  + ++P         LR     ++   +         + +  V+L++  
Sbjct: 211 AAVELIKAVIRDVGVQPYDDETCTGQLRYIQLVVNSYVTSVPVEQRKNTCKVQVSLVWNS 270

Query: 124 -----------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVD 168
                      H++    WR      R  L    + I    +  +T I L     R +  
Sbjct: 271 RDEDSPGTELLHKMAYSLWRRGGQGSRRDL---LHSIWANFQTTQTNIILGQRWRRLFGH 327

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
             L             +SF Q N      +L+ +    +     +++++ G G   L LA
Sbjct: 328 SELWERVGGADVCYAPSSFGQANYQSFEDLLQRLQRYVRKGSA-VVDMFAGVGVIGLSLA 386

Query: 229 --RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
             R    V  VE+ K   E    +++    +    +     +  +A     E        
Sbjct: 387 ATRKCRFVKCVEVNKHCKEPFERSLSRLPASVDCQISWHCADAAEAPITWLE-------- 438

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--------------------------------- 313
                   + VDPPR GL    +  ++                                 
Sbjct: 439 ----GADVVVVDPPRKGLQPVLIEALRTASLRAQGKTRSPSRNEIDKVEKRPWMLRAKDG 494

Query: 314 ---------------AYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHM 356
                              ++Y+SC  DS  +D   L       +     ++ FP T  +
Sbjct: 495 GVQREGETTWRDDDVWPEQLIYVSCGWDSFKQDCEALEENGHWHLANAHAYNFFPGTDSI 554

Query: 357 ECGVLL 362
           E   + 
Sbjct: 555 EILAVF 560


>gi|255536931|ref|XP_002509532.1| conserved hypothetical protein [Ricinus communis]
 gi|223549431|gb|EEF50919.1| conserved hypothetical protein [Ricinus communis]
          Length = 518

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 131/439 (29%), Gaps = 109/439 (24%)

Query: 18  VDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFM 77
           V+          + +     S    +R RA+  +          ++ + T   + I +  
Sbjct: 77  VNEASDFFKNLGISDFTFDSSRLWGWRCRAKLAVRGSSMQPLIGLYQEGTHNVVDIPHCK 136

Query: 78  PGSLLINALMIEM---MATIRLEPL--------LRAKLFQIDYLTS--------QSDQAI 118
                INA +  +   +  + +EP         LR     +    +        +     
Sbjct: 137 AHHPSINAAVELLRQGITELNIEPYDEDQGTGDLRYVQMAVTTYNTSLPASERYKHGIVQ 196

Query: 119 VTLIYHRLLDDA-------------WRECAIR-LRDALHAR----KYQIQLIGRANKTKI 160
           V L+++   +++             WR    R     +H+     +     I   N+ + 
Sbjct: 197 VALVWNSRNENSPNFDKLNALANYLWRNGGPRTAVRFIHSIWANFQTSTNNIIFGNRWRH 256

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
            L      ER+     +L      +SF Q N      +L   L     +   + +LY G 
Sbjct: 257 LLGDQDFWERVGGIDMSL----APSSFGQANTRAFDALLRK-LQKYVPLGASVADLYAGA 311

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G   L LA  R    V  +E+ K S  +            +     SS  + QA      
Sbjct: 312 GVIGLSLAASRKCRSVKCIEVNKQSKISFEKAAER-----LPKSVDSSISWYQADTSVEP 366

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-------------------------Q 313
            + L          + + VDPPR GLD + V  +                         +
Sbjct: 367 LSWL-------MGSEVVIVDPPRKGLDASLVDALLTISSLERKPKSSPASFGHNSKVKDE 419

Query: 314 AYPHI--------------------------LYISCNPDSLCRDLSIL--STTHTIERLA 345
             P I                          +YISC  +S   D   L  S    +E+  
Sbjct: 420 KRPWILRAREASVEIGSKTTLEDPQSLPQTLIYISCGWESFKEDCKSLLSSKEWHLEKAH 479

Query: 346 LFDQFPYTRHMECGVLLVR 364
            F+ FP T+ +E   +  R
Sbjct: 480 GFNFFPGTQSIEILAVFKR 498


>gi|296171903|ref|ZP_06852967.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295893902|gb|EFG73673.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 135

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 23/152 (15%)

Query: 219 GNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G G F+  L        RVL V+ ++ +  +AR   A + +  V++V  S +    A R 
Sbjct: 1   GAGVFAAALGAAVGESGRVLTVDTSRAATRSARA--ALDDLPQVQVVTDSVRRALGAQRS 58

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLS 333
                                +DPPR+G     + ++ A   P +++I C   S  RD+ 
Sbjct: 59  ---------------GADVAVLDPPRTGAGRDVIDLLAAAGVPRVVHIGCEAASFARDIG 103

Query: 334 ILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           +     + +E++ +FD FP T H EC  LL R
Sbjct: 104 LYRGHGYAVEKIKVFDAFPLTHHTECVALLTR 135


>gi|225451414|ref|XP_002273563.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296082357|emb|CBI21362.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 118/415 (28%), Gaps = 106/415 (25%)

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIE 89
             +R RA+  +    +     ++ + +   + I +       INA           L +E
Sbjct: 83  WGWRCRAKLAVRGSSNSPLIGLYQENSHNIVDIPHCKAHHPSINATVELLKQGITHLKVE 142

Query: 90  MMATIRLEPLLRAKLFQIDYLTS--------QSDQAIVTLIY-HRLLDDAWRECAIRLRD 140
                +    LR     +    +        ++ +  VTL++  R  +    E    L +
Sbjct: 143 PYDEDQGTGELRYVQMAVTLNNTSLPASQRYRNGKVQVTLVWNSRNENSPSSEKLKALAN 202

Query: 141 AL-------------HAR----KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
            L             H+     +     I   N+ +  L      E +      L     
Sbjct: 203 FLWRNGGPRSNVHLIHSVWANFQTSTNNIIFGNRWRHLLGEIDFWEHVGGIDIAL----A 258

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAK 241
            +SF Q N      +L   L         + +LY G G   L LA  R    V  +EI K
Sbjct: 259 PSSFGQANTRAFDSLLRK-LQKYVPYGAAVADLYAGAGVIGLSLAATRKCRSVKCIEINK 317

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +  +    +     +    +     + +                        + VDPPR
Sbjct: 318 EARLSFEKTVGRLPKSIDTTISWHHADTSIGPLSWLM------------GSDVVVVDPPR 365

Query: 302 SGLDDATVGMVQ----------------------AYPHI--------------------- 318
            GLD + V  ++                        P I                     
Sbjct: 366 KGLDPSLVDALRTLSLAEKRAMLTERSFSKVKNEKRPWILRAREASVQIESKTSPEEGQS 425

Query: 319 -----LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
                +YISC  +S   D   L       +++   F+ FP T+ +E   +  R P
Sbjct: 426 LPKTLIYISCGWESFKEDCKSLLSRKEWHLDKAHGFNFFPGTQSIEVLAVFKRGP 480


>gi|33321937|gb|AAQ06688.1|AF496029_1 trma family RNA methyltransferase [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 92

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH--ILYISCNPDSLCRDLS 333
           E+   RLK+          +  DPPR+GL  + +  +        +YISCNP +L +DL 
Sbjct: 3   EKLLPRLKE---DGLPIDALIXDPPRTGLAKSLIKTLLRVKPASFVYISCNPSTLAQDLV 59

Query: 334 ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
           +L   + +  +   D  P T   EC   L  + 
Sbjct: 60  LLGEAYDVRVIENVDMLPQTPRCECIAKLTLRK 92


>gi|302756867|ref|XP_002961857.1| hypothetical protein SELMODRAFT_77358 [Selaginella moellendorffii]
 gi|300170516|gb|EFJ37117.1| hypothetical protein SELMODRAFT_77358 [Selaginella moellendorffii]
          Length = 444

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 65/426 (15%), Positives = 128/426 (30%), Gaps = 104/426 (24%)

Query: 25  MLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLIN 84
               ++  LQ+  S    +R RA+  +    DD +  +F++ +   + I         IN
Sbjct: 23  FQKRRIAKLQLIPSATHGWRCRAKLAVRGTSDDPFVGLFEEHSHSIVDIPECRAHHPSIN 82

Query: 85  ---ALMIEMMATIRLEPL--------LRAKLFQIDYLTSQ--------SDQAIVTLIY-- 123
               L+  ++  + ++P         LR     ++   +         + +  V+L++  
Sbjct: 83  AAVELIKAVIRDVGVQPYDDETCTGQLRYIQLVVNSYVTSVPVEQRKNTCKVQVSLVWNS 142

Query: 124 -----------HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD----RDYVD 168
                      H++    WR      R  L    + I    +  +T I L     R +  
Sbjct: 143 RDEDSPGTELLHKMAYSLWRRGGQGSRRDL---LHSIWANFQTTQTNIILGQRWRRLFGH 199

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
             L             +SF Q N      +L+ +    +     +++++ G G   L LA
Sbjct: 200 SELWERVGGADVCYAPSSFGQANYQSFEDLLQRLQRYVRKGSA-VVDMFAGVGVIGLSLA 258

Query: 229 --RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
             R    V  VE+ K   E    +++    +    +     +  +A     E        
Sbjct: 259 ATRKCRFVKCVEVNKHCKEPFERSLSRLPASVDCQISWHCADAAEAPITWLE-------- 310

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQ--------------------------------- 313
                   + VDPPR GL    +  ++                                 
Sbjct: 311 ----GADVVVVDPPRKGLQPVLIEALRTASLRAQGKTRSPSRNEIYKVEKRPWMLRAKDG 366

Query: 314 ---------------AYPHILYISCNPDSLCRDLSILSTT--HTIERLALFDQFPYTRHM 356
                              ++Y+SC  DS  +D   L       +     ++ FP T  +
Sbjct: 367 GVQREGETTWRDDDVWPEQLIYVSCGWDSFKQDCEALEENGHWHLANAHAYNFFPGTDSI 426

Query: 357 ECGVLL 362
           E   + 
Sbjct: 427 EILAVF 432


>gi|226507434|ref|NP_001143384.1| hypothetical protein LOC100276021 [Zea mays]
 gi|195619410|gb|ACG31535.1| hypothetical protein [Zea mays]
          Length = 547

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 122/435 (28%), Gaps = 104/435 (23%)

Query: 19  DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP 78
             +        V +    R     +R RA+  +    ++    ++ + T   + I     
Sbjct: 112 QEVANFFKGHGVGDFTFSRGRLSQWRCRAKLAVRGTPENPLIGLYQEGTHAVIDIPECRA 171

Query: 79  GSLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTS--------QSDQAIV 119
               INA +  +   I    +           LR     +    +        +  +  V
Sbjct: 172 HHPSINAAVKLLRQGITELSIQPFDEDAGAGELRYVQMAVTTYNTSIPVDKRYEQGKVQV 231

Query: 120 TLIY-HRLLDDAWRECAIRLRDALHARK---------YQIQLIGRANKTKICLDRDYVDE 169
           +L++  R       E    + + L             + I    + + + I     +   
Sbjct: 232 SLVWNSRDERSQNAEKLTSIIEYLWTNGGPKSSVHLIHSIWANFQTSTSNIIFGHKW--- 288

Query: 170 RLTVAGRTLIYRQI-------ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
           R     R +  R           SF Q N      +L   L         +++LY G G 
Sbjct: 289 RHLKGERDMWERYGGVDISLDPCSFGQANTLSFNSLLHK-LNKYVPRSSTVVDLYSGAGV 347

Query: 223 FSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
             L +A  R    V  +EI K S  +   + +    N    +   + + +       E  
Sbjct: 348 IGLSVAASRKCRSVKCIEINKQSKMSFETSASRLPANLGCTITWHNTDASVEPSHWLE-- 405

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ----------------------AYPHI 318
                         + VDPPR GL  + +  +Q                        P I
Sbjct: 406 ----------GSSVVIVDPPRKGLHPSVISALQKVALSERKAYKAKSSLAKVKDEKRPWI 455

Query: 319 --------------------------LYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
                                     +YISC  +S  RD   L  S    +E    F+ F
Sbjct: 456 LRAREAAVHVDNTTTEEGNETWPETLIYISCGWESFKRDCKSLISSKAWQLENAHAFNFF 515

Query: 351 PYTRHMECGVLLVRK 365
           P T  +E   +  R+
Sbjct: 516 PGTDSIEILAIFKRE 530


>gi|332687202|ref|YP_004456976.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC
           35311]
 gi|332371211|dbj|BAK22167.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC
           35311]
          Length = 236

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 18/137 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-------QIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K D L+Q +  F+  N         +    P +YR +A+F +   
Sbjct: 82  GCQLQHLSYEAQLIFKRDLLKQALAKFKPENYSNYPLHKTLGMKNPWNYRNKAQFQLAQT 141

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR-----------LEPLLRAK 103
            + +Y  ++   + + + ID       +IN ++ +++  +               + +  
Sbjct: 142 NNKIYSGLYQAGSHQIVAIDNCPVQQTVINDIIQKIIKILNNYNLPIYNEQKNSGIFKTL 201

Query: 104 LFQIDYLTSQSDQAIVT 120
           + +    T +     +T
Sbjct: 202 MVRNSIQTGKVQVVFIT 218


>gi|77380207|gb|ABA71738.1| RNA methyltransferase fusion protein [Enterococcus faecalis]
          Length = 160

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 315 YPHILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVRKP 366
              I+Y+SCNP +L RD+++L    +  + +   D FP T H+E  VLL  K 
Sbjct: 4   PERIVYVSCNPATLARDIALLTEGGYEAKEIQPVDNFPQTTHIETVVLLSHKK 56


>gi|213023407|ref|ZP_03337854.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213612570|ref|ZP_03370396.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 60

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 308 TVGMVQAYP-HILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
              +++  P  I+Y+SCNP +L RD   L +  + + RLA+ D FP+T H+E  VL  R
Sbjct: 1   MRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFER 59


>gi|270636082|ref|ZP_06222089.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Haemophilus
           influenzae HK1212]
 gi|270317401|gb|EFA28916.1| 23S rRNA (Uracil-5-)-methyltransferase rumA (23S
           rRNA(M-5-U1939)-methyltransferase) [Haemophilus
           influenzae HK1212]
          Length = 164

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 10/155 (6%)

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           +L  I+ + + +  A++ L Y + L +  R   ++      A + ++ L  ++++    +
Sbjct: 19  QLGHIELVAADNGVAML-LRYTKNLAEIDRTLLLKF-----AEQEKLMLFLQSDEG---I 69

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNG 221
           +++Y D         +        F Q N  +N  M+   L   +  Q D +L+L+CG G
Sbjct: 70  EQNYGDSPYYQFSDGIKLHFDIRDFIQVNRALNERMVNTALDWLELNQQDCVLDLFCGMG 129

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           NF+L LA+     + +E     V+ A  N   N +
Sbjct: 130 NFTLPLAKRVKNAVGIEGVFEMVQKAAQNAERNQI 164


>gi|38679241|gb|AAR26256.1| OssF [Streptococcus thermophilus]
          Length = 206

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHD 54
              L+  +Y++QL  K D L Q +  F+  N +       I   +P HYR + +F I   
Sbjct: 81  GCQLMHLRYDKQLEFKTDLLGQALKKFKPANFESYEIRPTIGMKQPQHYRAKLQFQIRSF 140

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
           G  +   +F + +   + ID  +    L  A+M ++   +    L      +I  + +
Sbjct: 141 GGSVKAGLFAEGSHRLINIDDCLVQDELTQAIMNKVTNLLDKYKLPIYNERKISGIRT 198


>gi|149019781|gb|EDL77929.1| rCG36750, isoform CRA_b [Rattus norvegicus]
          Length = 153

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 23/127 (18%)

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N   N ++NV+     +++    +  +    +L              +DPPR+GL    +
Sbjct: 2   NALTNELSNVEFHCGRAEDLVPGLVSKLSSQQL-----------VAVLDPPRAGLHSKVI 50

Query: 310 GMVQA---YPHILYISCNPDSLCRDLSILST---------THTIERLALFDQFPYTRHME 357
             ++       +LY+SCNP +   +   L                +    D FP T H E
Sbjct: 51  LAMRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCE 110

Query: 358 CGVLLVR 364
             +L  R
Sbjct: 111 MLILFER 117


>gi|330889402|gb|EGH22063.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 330

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 16/241 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ----IFRSEPIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L                  + YR RA   +  D   
Sbjct: 99  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKA 158

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 159 KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQA-LGHVELFSG--- 214

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 215 --VATAVLLRHTAPLAEADLALLQAFCSKHGAQLWLHGDGEPQPASPG-DTLGYRLEPWN 271

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRV 234
             L +R     F Q NA +N  M+E  L      + + +++L+CG GNF+L LA     V
Sbjct: 272 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAKEV 329

Query: 235 L 235
           +
Sbjct: 330 V 330


>gi|330981853|gb|EGH79956.1| tRNA (uracil-5-)-methyltransferase [Pseudomonas syringae pv.
          aptata str. DSM 50252]
          Length = 84

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 1  MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
          MS       Y++QL EK  RLR+++  F  P  Q+F S   HYR+RAEF +W +    Y+
Sbjct: 1  MSVPFDPASYDRQLEEKTVRLRELLAPFDAPEPQVFDSPREHYRLRAEFRLWREDQKRYY 60

Query: 61 IMFDQQTKE-RMRIDYFMPGSLLI 83
           MF        + ++     S  I
Sbjct: 61 AMFAPGDNRTPILLEGLPIASERI 84


>gi|326534126|dbj|BAJ89413.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 122/436 (27%), Gaps = 101/436 (23%)

Query: 19  DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP 78
             +        + +    R     +R RA+  +    +     ++ + T     I     
Sbjct: 105 QEVADFFSGHGIEDFTFSRGRLSEWRCRAKLAVRGTPEKPLIGLYQEGTHTVQDIPECRA 164

Query: 79  GSLLIN-----------ALMIEMMATIRLEPLLRAKLFQIDYLTS--------QSDQAIV 119
               IN            L ++          LR     +    +        +  +  V
Sbjct: 165 HHPSINYAIKLLKQGISELNVQPFNEDAGTGELRYVQMTVTTYNTSIPVAQRYEQARVQV 224

Query: 120 TLIYHRLLDDAWRECAIRL-----------RDALHARKYQIQLIGRANKTKICLDRDY-- 166
           +L+++   + +     + L           R  LH   + I    + + + I     +  
Sbjct: 225 SLVWNSRDERSKNSEKLSLLQEFLWTNGGPRSNLH-VIHSIWANFQTSTSNIIFGHKWRH 283

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
              +  L      +       SF Q N      +L  ++         +++LY G G   
Sbjct: 284 IGGEADLWERFGGVDICLDPYSFGQANTLSFNSLLHKLIK-YVPRGSTVVDLYSGAGVIG 342

Query: 225 LVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           L +A  R    V  VEI K S  +   + +    N    +   + + +       E    
Sbjct: 343 LAIAASRKCRSVRCVEINKMSKLSFEKSASRLPPNLGCTITWHNTDASAEPIHWLE---- 398

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ----------------------AYPHI-- 318
                         VDPPR GL  + +  +Q                        P I  
Sbjct: 399 --------GSSVAIVDPPRKGLHPSVINALQRVALSERKAFKAKSSLTKAKDEKRPWILR 450

Query: 319 ------------------------LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPY 352
                                   +YISC  DS  +D   L  +    +E    F+ FP 
Sbjct: 451 AREPAVHVDSTIMEESSGIWPETLIYISCGWDSFKKDCKSLISNEAWHLENAHAFNFFPG 510

Query: 353 TRHMECGVLLVRKPSG 368
           T  +E   +  R+ SG
Sbjct: 511 TDSIEVLAIF-RRDSG 525


>gi|254361472|ref|ZP_04977612.1| possible tRNA methyltransferase [Mannheimia haemolytica PHL213]
 gi|153092982|gb|EDN74008.1| possible tRNA methyltransferase [Mannheimia haemolytica PHL213]
          Length = 82

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYISCNPDSLCRDLSILSTTHTIERLA 345
                  + V+PPR G+       +     P+++Y SCN  S+  D + L+  + + ++ 
Sbjct: 4   AGSPPDLVIVNPPRRGIGKLLAEFLNQLGSPYLIYSSCNAVSMANDFTFLTN-YELHKVQ 62

Query: 346 LFDQFPYTRHMECGVLLVRK 365
           LFD F +T H E    LV+K
Sbjct: 63  LFDMFAHTAHYETLTFLVKK 82


>gi|294887409|ref|XP_002772095.1| RNA m5u methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239876033|gb|EER03911.1| RNA m5u methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 534

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 115/382 (30%), Gaps = 89/382 (23%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------------VPNL-------------QI 35
           S  L    Y +QL  K   +      F               PN              +I
Sbjct: 156 SAPLFTYSYAEQLRLKEQFIMHAARNFTREVKAHCEKRQYPFPNWARVHKNKPGCTVHEI 215

Query: 36  FRSEPI---HYRMRAEFHIWHDGDDLY------------HIMFDQQTKERMRIDYFMPGS 80
             S       YR + EF I +                  H +  +  K    I   M   
Sbjct: 216 VGSPETNLEGYRNKCEFTIGYSDFQCSKPEVGFVRRVEGHELLIESGKALPHIPACMKAI 275

Query: 81  LLINALMIEMMATIRLEPLLRAK----LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
                 ++ +    +++P  R +      Q+    S S   ++ ++      +       
Sbjct: 276 EGELRKLV-LENYDQVKPFSRHQKKGTWRQVMLRWSPSRDQMLMVVMCCEPYELATNIIK 334

Query: 137 RLRDALHARKYQIQLIGRANKTK--IC---------LDRDYVDERLTVAGRTLIYRQIEN 185
              ++   +   + +     +T   +C         L   Y D R+ +    L +     
Sbjct: 335 TWAESAANKSLPVPVSSVFMQTNNGVCDACDMKAEDLHHIYGDTRVMMDMLGLEFPLQPA 394

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD------------------LLELYCGNGNFSLVL 227
           SF Q N  +   +    +        D                  ++++  G G  + V 
Sbjct: 395 SFFQTNVVMCKKLYTMAVRLALTGSPDGDDLPKLEELDSAKMPAAVVDVCSGVGTITQVF 454

Query: 228 ARHFD-------RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREF 279
           A           RV  +E+   +VE A+ +  AN ++ +V+ +   ++E  + + +E   
Sbjct: 455 ASILGPKPDGKPRVYGLELVPDAVEDAKASARANKLDSSVRFIAGRAEETIEDVIKE--- 511

Query: 280 NRLKDIDIHSYRFKTIFVDPPR 301
                 DI   +  T+ VDPPR
Sbjct: 512 ---ACSDIQGGQKLTVIVDPPR 530


>gi|296005341|ref|XP_002808999.1| SAM dependent methyltransferase, putative [Plasmodium falciparum
           3D7]
 gi|225631935|emb|CAX64280.1| SAM dependent methyltransferase, putative [Plasmodium falciparum
           3D7]
          Length = 800

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 108/277 (38%), Gaps = 31/277 (11%)

Query: 16  EKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDY 75
           +K     +    +         S   +YR ++  +     D L    + + + E   I+ 
Sbjct: 291 QKEKNNEEKRNIYYAKLYNFIYSNDYNYRNKSSINFCVT-DHLSIGFYKKNSYEICDINN 349

Query: 76  FMPGSLLINALMIEMMATIR-----LEPLLRAKLFQIDYLTS---------QSDQAIVTL 121
                  I  +  ++   I+         +  K+    YL S         +  Q ++  
Sbjct: 350 CYIHDKYIQDIYTQIKNEIKEHFIKNNIYIFNKINNNGYLKSVDIKISDYNKEKQILINF 409

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--------KICLDRDYVDERLTV 173
           I + L +   ++  I + + L  +   I+ +    +         +I L   Y    +  
Sbjct: 410 IGYTLTNTQTKKNLITIANNLALKNPMIKGVLYNEQKNKLKQNKKEILL---YGQNHIYH 466

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLA 228
           +    IY+   N+F QPN  +N +++  +    +  + +     L +L+CG G +S+ LA
Sbjct: 467 SYNKYIYKLGANTFFQPNQYLNQYIIRIISKIIEKYKINSSNTCLYDLFCGIGFYSIPLA 526

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             FD V++++ +  ++++   NI  N + N++ ++M 
Sbjct: 527 NLFDHVISIDYSIDNIKSLEENINLNKIKNIRCIQMD 563



 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 292 FKTIFVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
              I V+PPR G        ++     HI+Y+SCN  S  +D+S L +  + I+ +   D
Sbjct: 696 PDLIIVNPPRKGCGKVFRRWIRGLCCKHIIYVSCNVHSQFKDISHLINLGYIIKDIIPLD 755

Query: 349 QFPYTRHMECGVLLV 363
            FP T H E  V L 
Sbjct: 756 TFPRTPHFETIVYLK 770


>gi|293391858|ref|ZP_06636192.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952392|gb|EFE02511.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 310

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 77/249 (30%), Gaps = 28/249 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y  QL  K   L+Q +          L+ F+S+P  +R +A+  I    +  
Sbjct: 14  SCQWLETPYAAQLERKTAHLQQQLRGLNTSRLTWLKPFQSQPTAFRNKAKMVISGAVERP 73

Query: 59  YHIMFD-----QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL--------LRAKLF 105
              +       Q   +      +      I +++ + +A   L P         L+  L 
Sbjct: 74  ILGILPNPQAPQSAVDLCDCPLYPQRFQAIFSILKDFIARAGLVPYNVAKQKGELKHILL 133

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA---RKYQIQLIGRA---NKTK 159
                + Q     V     +L     R     LR  L         IQ    A    + +
Sbjct: 134 TESRHSHQLMLRFVLRSESKL--PLIRRELPALRQKLPQLAVISVNIQPQNAAILEGEKE 191

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           I L   +    L  +   +        F Q N  +   +        + +  D L +L+C
Sbjct: 192 IFLTEQH---TLPESFNGIPLFIRPQGFFQTNPQVAEGLYGTAQQWIQDLPIDTLWDLFC 248

Query: 219 GNGNFSLVL 227
           G G F L  
Sbjct: 249 GVGGFGLHC 257


>gi|157056857|gb|ABV02443.1| hypothetical protein [Arcobacter skirrowii]
          Length = 69

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 47/67 (70%)

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           DP RSGLDD T  + + + +I+YISCNP +L RDL  L  TH + R ALFDQF Y+ H+E
Sbjct: 1   DPSRSGLDDTTRALAKNFTNIIYISCNPQTLHRDLEELLKTHKVLRFALFDQFAYSEHIE 60

Query: 358 CGVLLVR 364
            GV+L +
Sbjct: 61  SGVILKK 67


>gi|254832455|ref|ZP_05237110.1| hypothetical protein Lmon1_13954 [Listeria monocytogenes 10403S]
          Length = 50

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 317 HILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPYTRHMECGVLL 362
            ++Y+SCNP +L RD+ IL+   +  +++   D FP T H+E   +L
Sbjct: 1   KVVYVSCNPGTLARDMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL 47


>gi|227488758|ref|ZP_03919074.1| SAM-dependent methyltransferase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227542245|ref|ZP_03972294.1| SAM-dependent methyltransferase [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227091180|gb|EEI26492.1| SAM-dependent methyltransferase [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227182074|gb|EEI63046.1| SAM-dependent methyltransferase [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 414

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 55/376 (14%), Positives = 109/376 (28%), Gaps = 89/376 (23%)

Query: 11  EQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPI-HYRMRAEFHIWHDGDDLYHIMFD 64
           E++   K   L   +         +P  +I   +    YR RA F +   G      +  
Sbjct: 102 EKEAELKETILIDQLHRIGRFDGELPAPEIVDIDTRPGYRTRARFGVNRQG---RAGVRK 158

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           + + + +           I  ++ E                                  H
Sbjct: 159 RHSNDIV-CTRCSAIDPRIYDVVEE----------------------------------H 183

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGR--ANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                A   CA+     +H  +      G+  +N+ ++      V+E++        +  
Sbjct: 184 TFTPGAEVVCAVDSTGEVHVVETVRAPRGKRVSNRGRLVAGSKLVNEKV----EDTPFAF 239

Query: 183 IENSFTQPN---AGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLA----RH 230
               F Q +     I   ++           G        +LY G G  +  +       
Sbjct: 240 PVTGFWQAHKDVPAIFSSLIHEATKDDHFAGGTDQPLVGWDLYGGVGALAPAVVAALADP 299

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              V++V+     V            + V   R    +   ++                 
Sbjct: 300 VADVISVDTTN--VRD------WQGSDQVAFARGDVAKTIPSLP---------------- 335

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSIL-STTHTIERLALF 347
           +   + +DPPR+G    T+  +       +++  C+P +  RDL         I+R+ L 
Sbjct: 336 QPALVILDPPRTGAGTMTIADIAMRRPQRVVHFGCDPATCARDLRTWVDNGFHIDRIFLV 395

Query: 348 DQFPYTRHMECGVLLV 363
           + FP + H E  V L 
Sbjct: 396 NAFPGSYHFETVVSLS 411


>gi|222619770|gb|EEE55902.1| hypothetical protein OsJ_04570 [Oryza sativa Japonica Group]
          Length = 526

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 120/427 (28%), Gaps = 102/427 (23%)

Query: 19  DRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMP 78
             +        V +    R     +R RA+  I    ++    ++ + T     I     
Sbjct: 105 QEVENFFKGHGVGDFTFSRGRLREWRCRAKLAIRGTPENPLIGLYQEGTHAVADIPECRA 164

Query: 79  GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS--------QSDQAIVTLIYHRLLDDA 130
               I+ L IE          LR     +    +        +  +  V+L+++   + +
Sbjct: 165 ----ISELNIEPFDEDASTGELRYVQMAVTTYNTSIPVAKRYEQGRVQVSLVWNSRDERS 220

Query: 131 WRECAIRLRDALHARK------------------YQIQLIGRANKTKICLDRDYVDERLT 172
                + L      R                        I   +K +  +  + + ER  
Sbjct: 221 KNAEKLSLLSEFLWRNGGPRSNVHLIHSIWANFQTSTSNIIFGHKWRHLIGENDLWERYG 280

Query: 173 VAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--R 229
               +L       SF Q N    N  +    L         +++LY G G   L LA  +
Sbjct: 281 GVDISL----DPYSFGQANTLSFNALL--HTLHKYVPRGSTVVDLYSGAGVIGLSLAASK 334

Query: 230 HFDRV-LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               V +  EI K S  +   + +    N    +   + + +       E          
Sbjct: 335 KCRSVKMLFEINKLSKMSFEKSASRLPPNLGCTITWHNTDASVEPVHWLE---------- 384

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQ----------------------AYPHI-------- 318
                 + VDPPR GL  + +  +Q                        P I        
Sbjct: 385 --GSSVVIVDPPRKGLHPSVICALQKVALSERKAYKAKSTLTKVKDEKRPWILRAREAAV 442

Query: 319 ------------------LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMEC 358
                             +YISC  DS  +D   L  S    ++    F+ FP T  +E 
Sbjct: 443 QVDSTPLEGSSETWPETLIYISCGWDSFKKDCKSLMSSKAWHLQNAHAFNFFPGTDSIEV 502

Query: 359 GVLLVRK 365
             +  R+
Sbjct: 503 LAIFKRE 509


>gi|147845832|emb|CAN82187.1| hypothetical protein VITISV_031112 [Vitis vinifera]
          Length = 480

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 70/427 (16%), Positives = 122/427 (28%), Gaps = 125/427 (29%)

Query: 41  IHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINA-----------LMIE 89
             +R RA+  +    +     ++ + +   + I +       INA           L +E
Sbjct: 43  WGWRCRAKLAVRGSSNSPLIGLYQENSHNIVDIPHCKAHHPSINATVELLKQGITHLKVE 102

Query: 90  MMATIRLEPLLRAKLFQIDYLTS--------QSDQAIVTLIY-HRLLDDAWRECAIRLRD 140
                +    LR     +    +        ++ +  VTL++  R  +    E    L +
Sbjct: 103 PYDEDQGTGELRYVQMAVTXNNTSLPASQRYRNGKVQVTLVWNSRNENSPSSEKLKALAN 162

Query: 141 AL-------------HAR----KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
            L             H+     +     I   N+ +  L      E +      L     
Sbjct: 163 FLWRNGGPRSNVHLIHSVWANFQTSTNNIIFGNRWRHLLGEIDFWEHVGGIDIAL----A 218

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDR-----VLA 236
            +SF Q N      +L   L         + +LY G G   L LA  R   +     V  
Sbjct: 219 PSSFGQANTRAFDSLLRK-LQKYVPYGAAVADLYAGAGVIGLSLAATRKCRQELRWSVKC 277

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF---- 292
           +EI K +                   R+S ++    + +  +          S       
Sbjct: 278 IEINKEA-------------------RLSFEKTVGRLPKSIDXTISWHHADTSIGPLSWL 318

Query: 293 ---KTIFVDPPRSGLDDATVGMVQ----------------------AYPHI--------- 318
                + VDPPR GLD + V  ++                        P I         
Sbjct: 319 XGSDVVVVDPPRKGLDPSLVDALRTLSLAEKRAMLTERSFSKVKNEKRPWILRAXEASVQ 378

Query: 319 -----------------LYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECG 359
                            +YISC  +S   D   L       +++   F+ FP T+ +E  
Sbjct: 379 IESKTSPEEGQSLPKTLIYISCGWESFKEDCKSLLSRKEWHLDKAHGFNFFPGTQSIEVL 438

Query: 360 VLLVRKP 366
            +  R P
Sbjct: 439 AVFKRGP 445


>gi|303328667|ref|ZP_07359061.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio sp.
           3_1_syn3]
 gi|302861223|gb|EFL84203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio sp.
           3_1_syn3]
          Length = 216

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 10/156 (6%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDER----LTVAGRTLIY 180
           R L +        L   +H  +     +    +  +CL+    ++     L +     ++
Sbjct: 61  RSLGEELLGGFPDLAAFVHEERQSPDALAAGERRVLCLNGSGGEDPQAALLHLPLGDCLF 120

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQG------DLLELYCGNGNFSLVLARHFDRV 234
                SF Q N     ++        +  +G       LL+LYCG G    +LA  +DR+
Sbjct: 121 ALDAASFFQVNTRAAQNLARLAQDMLRQTRGGAENGASLLDLYCGVGAPGQLLAPDYDRL 180

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L +E  K +V  AR N     +   +     +    
Sbjct: 181 LGLECDKRAVALARRNAERGGLIRCRYEAGDAAALL 216


>gi|303325854|ref|ZP_07356297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio sp.
           3_1_syn3]
 gi|302863770|gb|EFL86701.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio sp.
           3_1_syn3]
          Length = 67

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 302 SGLDDATVG-MVQAYPH-ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
           +GL    +  ++   P  ILYISCNP +L RD   L T +++ERLA  D FP+T H+EC 
Sbjct: 1   AGLAPRVLDGLLALRPQTILYISCNPATLARDADGLQTRYSLERLAAVDLFPHTPHLECL 60

Query: 360 VL 361
            L
Sbjct: 61  SL 62


>gi|224419305|ref|ZP_03657311.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
 gi|313142804|ref|ZP_07804997.1| predicted protein [Helicobacter canadensis MIT 98-5491]
 gi|313131835|gb|EFR49452.1| predicted protein [Helicobacter canadensis MIT 98-5491]
          Length = 55

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/50 (62%), Positives = 37/50 (74%)

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRKPS 367
           ILYISCNP SL +DL ILS TH I + A FDQFP+T H+E G+LL +  S
Sbjct: 4   ILYISCNPLSLAKDLKILSQTHRIVKAAFFDQFPHTSHLETGILLQKVDS 53


>gi|123423378|ref|XP_001306363.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121887933|gb|EAX93433.1| hypothetical protein TVAG_137180 [Trichomonas vaginalis G3]
          Length = 498

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 59/374 (15%), Positives = 128/374 (34%), Gaps = 34/374 (9%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSE-PIHYRMRAEFHIWHDGDDLYHIMFDQQTKE 69
           E++L  K       +       L+I  S        R +    +D +    + F+  ++ 
Sbjct: 138 EERLKRKKTETESFLREVYSEPLEIVESPLEYTCHSRVDLIAGYDINGEICVGFNSSSRV 197

Query: 70  ---RMRIDYFMPGSLLINALMIEMMATIRLE-------PLLRAKLFQIDYLTSQSDQAIV 119
               ++ID        +  +     + I           L   K  ++    + +++ ++
Sbjct: 198 NAMIIQIDDSFKVPKQVIEIASVFKSYISKSIFPPYDYDLRTGKWMKLSIRITSTNKVLI 257

Query: 120 TLIYH--RLLDDAWRECAIR--LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           T+       LD+  +  ++     ++++  K         N         +V E++    
Sbjct: 258 TVATKGGLPLDEVDKLKSVLSPHANSIYWLKCDENQASFNNPHHTISGAQFVVEKI---- 313

Query: 176 RTLIYRQIENS-FTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233
           R L +     + F Q N  I   +++ +       +  +L +  CG G   L L++   R
Sbjct: 314 RDLAFPIYPFTVFPQ-NFYIFDKVIDTIKEMASLDENTVLVDFCCGTGVNCLSLSKSVKR 372

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
            + ++ ++ ++  ++ N   N + N   V                  RL           
Sbjct: 373 CIGIDSSESNIATSQRNAEENQIKNAYFVIGGQSSLGDIANNVTGTERLVGF------LD 426

Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
           T  + P    L +A          ++Y++ +P +L  DL        I+++ LFD  P T
Sbjct: 427 TSQIGPHTEILKNA--SFCTKLKSLVYVTKSPSTLRYDLFRNFPDMEIKKVKLFDIDPLT 484

Query: 354 RHMEC--GVLLVRK 365
             +E      L RK
Sbjct: 485 --IESQLVAFLTRK 496


>gi|167948631|ref|ZP_02535705.1| 23S rRNA 5-methyluridine methyltransferase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 65

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 314 AYPHILYISCNPDSLCRDLSILST--THTIERLALFDQFPYTRHMECGVLLVR 364
               I+Y+SC P +L RD  IL     + +    + D FP+T H+E   L  +
Sbjct: 12  GVERIVYVSCYPGTLARDAGILCHQHGYRLVSAGVMDMFPHTAHVESIALFEK 64


>gi|329850869|ref|ZP_08265714.1| 23S rRNA uracil-5--methyltransferase rumA [Asticcacaulis
           biprosthecum C19]
 gi|328841184|gb|EGF90755.1| 23S rRNA uracil-5--methyltransferase rumA [Asticcacaulis
           biprosthecum C19]
          Length = 78

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 291 RFKTIFVDPPRSGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLALFD 348
            F  I  DPPR+G +     + +      + +SCNP +  RD  IL +   +++R+   D
Sbjct: 3   GFDAIVFDPPRAGAEAQAAEIARSGVARAVAVSCNPQTFVRDAKILVNAGFSLDRVTPID 62

Query: 349 QFPYTRHMECGVLLVR 364
           QF ++ H+E   +  R
Sbjct: 63  QFLWSAHVELVGVFSR 78


>gi|302834393|ref|XP_002948759.1| hypothetical protein VOLCADRAFT_41894 [Volvox carteri f.
           nagariensis]
 gi|300265950|gb|EFJ50139.1| hypothetical protein VOLCADRAFT_41894 [Volvox carteri f.
           nagariensis]
          Length = 489

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 114/433 (26%), Gaps = 102/433 (23%)

Query: 23  QMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRI--------D 74
           +      +  +         +R RA+  +          +F + + E + I         
Sbjct: 43  EFFRGLGLTEVPAVMKAARGWRCRAKLAVRGPVGRPLIGLFREGSHEVVDIVGPISPLPP 102

Query: 75  YFMPGSLLINALMIEMMA-------------------TIRLEPLLRAKLFQIDYLTSQSD 115
                   IN     +                      +   P       + D L +   
Sbjct: 103 ACRAHHPRINEAAALIKEVRPGTEAAAVAAGGLLRYLQLTAVPSQPGGRAEDDPLAAVQV 162

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDA------LHARKYQIQLIGRANKTKI-CLDRDY-- 166
             ++        DD  +E   R R        +    + I L  + +  +   L   +  
Sbjct: 163 VLVLNAPPECEPDDPRKEPKSRARAKAQKPPSVAPLVHSIWLNFQPDAARNSVLGEGWRH 222

Query: 167 --VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
                        +       SF Q N G    +L   +A        + EL+ G G   
Sbjct: 223 MAGPAAAWQEFGGVAACVGPGSFVQANYGAMQLVLGE-IANMVPYGSRVTELHAGIGVIG 281

Query: 225 LVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           L LA  R    +  VE+   + E  R ++           +   ++     + ER     
Sbjct: 282 LSLATRRRLAALRCVEVNPAAAEPFRTSLERAMRTTWASTQEQQQQQVAGSQPERFLE-- 339

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-------------------------- 316
                       + VDPPR GL  + +  +   P                          
Sbjct: 340 --------GCDVLVVDPPRKGLGQSLLAALTRQPQSPESALSSSSSSSSSSSSSSKAAAA 391

Query: 317 ------------------------HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFP 351
                                    ++Y+SC   +L  DL+ +LS    +     +  FP
Sbjct: 392 VAATVAATHGAVPEAAGCSPALPSRLVYLSCGFRALQGDLAVLLSGGWRLRSATAYLFFP 451

Query: 352 YTRHMECGVLLVR 364
            T  +E  VLL R
Sbjct: 452 GTDSLETLVLLSR 464


>gi|311977791|ref|YP_003986911.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus]
 gi|82000201|sp|Q5UQK1|YR407_MIMIV RecName: Full=Putative RNA methyltransferase R407
 gi|55417026|gb|AAV50676.1| tRNA (uracil-5-)-methyltransferase [Acanthamoeba polyphaga
           mimivirus]
 gi|308204810|gb|ADO18611.1| putative RNA methyltransferase [Acanthamoeba polyphaga mimivirus]
          Length = 356

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 17/200 (8%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG---NGNFSLVL 227
           +      + +     +F+Q N      ML   L     I  D   + C     G+  L L
Sbjct: 166 IQENILGINFWITPFTFSQANPNTCE-MLYETLHQFINIDHDKRSIICYGRNVGHICLTL 224

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
            +    V A           +  + +N      I+ ++ + F    + E   ++L  +D 
Sbjct: 225 -KSTKNVWAYNPCPVVDSDLKRTLTSN------IISVNIQLFLDT-KCELISDKLNLLDQ 276

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL----YISCNPDSLCRDLSILSTTHTIER 343
           +      + V P R+GL +  +  ++    I+    Y+SC   SL RDL  +   H IE+
Sbjct: 277 YDKSNYLLIVSPGRNGLKNNVIQAIKQSRSIIKEFYYVSCYSKSLIRDLKNIENCH-IEK 335

Query: 344 LALFDQFPYTRHMECGVLLV 363
               D FP T   E  V +V
Sbjct: 336 AQAIDLFPSTEFCETIVKIV 355


>gi|330876401|gb|EGH10550.1| 23S rRNA m(5)U1939 methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 49

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 319 LYISCNPDSLCRD-LSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           LY+SCNP +L RD + ++S  + ++R  + D FP T H+E   L  
Sbjct: 1   LYVSCNPATLARDTVELISQGYRLKRAGILDMFPQTAHVEAMALFE 46


>gi|219122341|ref|XP_002181505.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406781|gb|EEC46719.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 604

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 69/425 (16%), Positives = 121/425 (28%), Gaps = 100/425 (23%)

Query: 35  IFRSEPIHYRMRAEFHIWHD-----GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE 89
           +  S    +R +A+  +         D     ++ + T + + I         IN  +  
Sbjct: 185 VVPSAVRGWRTQAKLAVAPKSSSWARDGCEFGLYQRGTHDVLAIPSCEVHHPAINRALDA 244

Query: 90  MM-----------ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL 138
           +            A    +  LR    Q++  T    +  +TL+++  L    +    RL
Sbjct: 245 LRLATAKTGTAAFAKDTRDGGLRYVQLQVERPT---QKVSLTLVWNAELLKETQPALARL 301

Query: 139 RDALHARKYQIQLIGRAN-----KTKI----------CLDRDYVDERLTVAGRTLIYRQI 183
              L  R+  +      +        I              +Y+ E + V  +  +Y   
Sbjct: 302 VKELQTREPDLWHSMWCHCNNGIGNNIFARNPRRWHRLSGMEYMREPIAVGNQGWLY-FS 360

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKP 242
             +F Q N      +   V  A  G    + ELY G G   L  LA        +E  + 
Sbjct: 361 PLTFRQGNLDGFDVLATDVARAVPGGS-KVCELYAGVGLLGLTTLAHLAKEGTPLEWIRC 419

Query: 243 SVE----------------------AARYN-----------IAANHVNNVKIVRMSSKEF 269
           S E                        R N                +         S+  
Sbjct: 420 SDENPSNPRCFQRSIESLPLEVTGLDRRTNRKSKEDQGMTLAELADLIEAGESSSRSEND 479

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-----QAYPHI------ 318
            +                 +     I VDPPR GL+D  +  +        P++      
Sbjct: 480 MEKASYMVATAAQALQRGEALGADVIIVDPPRKGLEDEVLESLCQPYKADQPYVESVNLL 539

Query: 319 ----------------LYISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECG 359
                           +Y+SC  D+L RD   L   +   T+     +  FP + H+E  
Sbjct: 540 TIADDKVNWTNDVETLIYVSCGFDALARDSQRLLSSAGGWTLHSATGYLLFPGSDHVETL 599

Query: 360 VLLVR 364
            +  R
Sbjct: 600 CIFKR 604


>gi|322806327|emb|CBZ03895.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402
           065]
          Length = 56

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 317 HILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
            I+++SC P +L RDL IL+   +    +   D FP T H EC   + R
Sbjct: 5   KIVHVSCYPATLARDLRILNDLGYKTLEVQPVDMFPQTAHTECVTRIER 53


>gi|323336787|gb|EGA78051.1| Trm2p [Saccharomyces cerevisiae Vin13]
          Length = 465

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 92/273 (33%), Gaps = 30/273 (10%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHIWHDGDDLY 59
           Y+ QL  K   +      F          P      + P    YR +   H         
Sbjct: 189 YDDQLELKRKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLRFGYRTKITPHFDMPKRKQK 248

Query: 60  HIM------FDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLL--RAKLFQIDYL 110
            +       F Q+ + + R D    G    I  +   ++AT  L   L    + F+ ++ 
Sbjct: 249 ELSVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERRKFEQEFK 308

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-ICLDRDYVD- 168
             +     +      +LD +         +A       I  +   +K   + L +  V  
Sbjct: 309 NYKKGATXLLRENTTILDPSKPTLEQLTEEASRDENGDISYVEVEDKKNNVRLAKTCVTN 368

Query: 169 --ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGD------LLELYCG 219
             + +T       +      F Q N  I   + ++V        +GD      L++ YCG
Sbjct: 369 PRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCG 428

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           +G FS+  ++  D+V+ VEI+  SV  A  N  
Sbjct: 429 SGLFSICSSKGVDKVIGVEISADSVSFAEKNXK 461


>gi|293364529|ref|ZP_06611254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
 gi|307702819|ref|ZP_07639769.1| hypothetical protein SMSK23_0772 [Streptococcus oralis ATCC 35037]
 gi|291317037|gb|EFE57465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
           ATCC 35037]
 gi|307623675|gb|EFO02662.1| hypothetical protein SMSK23_0772 [Streptococcus oralis ATCC 35037]
          Length = 62

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 315 YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              ++Y+SCN  +L RDL  L   + ++ +   D FP+T   E  V LV+K
Sbjct: 9   PDKMVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 59


>gi|315579656|gb|EFU91847.1| conserved domain protein [Enterococcus faecalis TX0630]
          Length = 47

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           YISCN  +L RDL  L+  + ++ L   D FP T   E  V L RK
Sbjct: 2   YISCNVSTLARDLVQLAKVYQVDYLQSVDMFPQTARCEVVVKLTRK 47


>gi|148889|gb|AAA24958.1| this partial ORF is 58% identical to an E.coli tRNA methyl
          transferase gene, trnA.; ORF4; putative [Haemophilus
          influenzae]
          Length = 63

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/61 (50%), Positives = 42/61 (68%)

Query: 5  LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
          L I QY + L +K+++L  ++  F  P++Q+F S   HY MRAEF IWH+ DD YHIMFD
Sbjct: 3  LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYAMRAEFRIWHEQDDFYHIMFD 62

Query: 65 Q 65
          Q
Sbjct: 63 Q 63


>gi|306828583|ref|ZP_07461777.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
 gi|304429191|gb|EFM32277.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
           6249]
          Length = 68

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 315 YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              ++Y+SCN  +L RDL  L   + ++ +   D FP+T   E  V LV+K
Sbjct: 9   PEKMVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 59


>gi|261493634|ref|ZP_05990153.1| putative tRNA methyltransferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261310634|gb|EEY11818.1| putative tRNA methyltransferase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 72

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 295 IFVDPPRSGLDDATVGMVQAYP--HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPY 352
           + V+PPR G+  A    +      +++Y SCN  S+ +D   L+  + + ++ LFD F +
Sbjct: 1   MIVNPPRRGIGQALAEFLNNLGSTYLIYSSCNAQSMAKDFESLTH-YELCKVQLFDMFAH 59

Query: 353 TRHMECGVLLVRK 365
           T H E    L++K
Sbjct: 60  TSHYETLTFLIKK 72


>gi|307111216|gb|EFN59451.1| hypothetical protein CHLNCDRAFT_18919 [Chlorella variabilis]
          Length = 474

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 113/372 (30%), Gaps = 49/372 (13%)

Query: 29  QVPNLQIFRSEPIHYRMRAEFHIWH-DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALM 87
            +P   +       +R RA   +           +F+++T     I   +     IN   
Sbjct: 108 GLPAFTLHVGNIHGWRQRARLAVRRGTEGQTVIGLFEERTHMATAIPSCVVHHPAINEAA 167

Query: 88  IEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR-----LLDDAWRECAIRLRDAL 142
             +   +    +   + +     T Q     +T +  R      L  A +   +     L
Sbjct: 168 ALLQQAVEACGV---EPYDEGQRTGQLRYVQLTAVQQRDSGGAALAPAVQLVLVSSSSRL 224

Query: 143 HARKYQIQLIG-------------RANKTKICLDRDYVDERLTVAGRTLIYR-------- 181
            +   Q+  +G              AN      ++    E   + G  L +         
Sbjct: 225 ASLADQLWRVGQRRPDGTPLLHSLWANFQPERSNKILGPEWRLLHGPDLAWARLGGADIA 284

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEI 239
               SF Q N       L  V+         + +L+ G G   L LA       V  VEI
Sbjct: 285 FGPGSFMQANREAMDCCLA-VMQQYVAPGSTIADLHAGVGTIGLSLAATCRPRWVRFVEI 343

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
               +   R + A   +  ++       ++  A           D     +  + +  DP
Sbjct: 344 NGHGLPPFRQSGARLRLRLLERGEAPQLDYHVAAAGS-------DPGRWCHGAEVVVCDP 396

Query: 300 PRSGLDDATVGMV-------QAYPHILYISCNPDSLCRDLSIL--STTHTIERLALFDQF 350
           PR GL+ A +G +            +LY+SC   +L  D + L  S    +     F  F
Sbjct: 397 PRKGLEAALLGWLCSPAAAAAGVRSLLYLSCGFPALQHDAAQLLGSGRWRLRHARGFAFF 456

Query: 351 PYTRHMECGVLL 362
           P   H+E   + 
Sbjct: 457 PGASHVETLAVF 468


>gi|324503863|gb|ADY41671.1| tRNA (uracil-5-)-methyltransferase A [Ascaris suum]
          Length = 772

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 28/175 (16%)

Query: 213 LLELYCGNGNFSLVL------ARHFDR---VLAVEIAKPSVEAARYNIAANHVN--NVKI 261
           +L + CG G+  L +      ++H      +   ++    +E A+     N       + 
Sbjct: 601 ILNIGCGMGSIGLYVMCLLRNSKHAAERKFLFGSDLLSGVIEGAKLCARDNGFTEEQCRF 660

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT---VGMVQAYPHI 318
           +   +++    +      + L      S       +DPPR  ++D        +     +
Sbjct: 661 LAGRTEDVVPIL-----HDHLPVWANESEVNMVGILDPPRGRINDNVAIACRKLSCMKRL 715

Query: 319 LYISCNPDSLCRDLSILS---------TTHTIERLALFDQFPYTRHMECGVLLVR 364
           +++S  P    R+L  L              +  +   D FP+T   E  V L R
Sbjct: 716 IFVSSEPSLALRNLVDLCKPKWKRYEGEPFKLASITPIDMFPHTERCEWVVQLDR 770


>gi|255282216|ref|ZP_05346771.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
 gi|255267164|gb|EET60369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
           formatexigens DSM 14469]
          Length = 64

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 307 ATVGMVQ-AYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVR 364
           A + ++      I+YISC P SL RDL++L    +  ER+   D FP T H+E    L R
Sbjct: 3   AAIKIIAFGVEKIVYISCKPTSLARDLAVLQQHGYKAERVCCVDLFPGTYHVETVCRLSR 62


>gi|308802299|ref|XP_003078463.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
           (ISS) [Ostreococcus tauri]
 gi|116056915|emb|CAL53204.1| tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
           (ISS) [Ostreococcus tauri]
          Length = 520

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 59/244 (24%), Positives = 89/244 (36%), Gaps = 35/244 (14%)

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVD---ERLT---VAGRTLIYRQIENSFTQPNA 192
           R+ +H     +Q    A    I  DR +     ERLT       T IY  +  SF Q NA
Sbjct: 293 REFVHGVWVNLQD---ARTNTIFNDRGWTHVRGERLTSLATPDGTPIY-YLPGSFMQANA 348

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL---ARH-FDRVLAVEIAKPSVEAAR 248
                +LE  +         + E+Y G G     L   A      +  VE +  +V+ A 
Sbjct: 349 EAYGALLER-MPRHVPRGARITEMYAGTGAIGFSLLMNAELDVQSLRCVESS-SAVKEAW 406

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                   + VK         ++A  R  + +R+  +   +     + VDPPR GL    
Sbjct: 407 ERTRDELPSGVK---------SKASLRVEKADRV--VVESTKDCDVLIVDPPRKGLGATV 455

Query: 309 VGMVQAY------PHILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGV 360
              + +         ++Y+SC  DS  RD   L  S    +     F  FP T H+E   
Sbjct: 456 RSALTSDTLSADLKVLMYVSCGFDSFQRDADELIRSGMWRLAHHESFIFFPATNHVEVFA 515

Query: 361 LLVR 364
           +  R
Sbjct: 516 VFER 519


>gi|317498214|ref|ZP_07956513.1| rumA protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894423|gb|EFV16606.1| rumA protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 51

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 318 ILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
           ++YISC P SL RDL +     + ++R    DQFP T H+E  VLL R+
Sbjct: 1   MVYISCKPTSLARDLEVFEAAGYKVKRATAVDQFPNTVHVETCVLLQRR 49


>gi|323354170|gb|EGA86016.1| Trm2p [Saccharomyces cerevisiae VL3]
          Length = 465

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 92/270 (34%), Gaps = 30/270 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQV--------PNLQIFRSEP--IHYRMRAEFHIWHDGDDLY 59
           Y+ QL  K   +      F          P      + P    YR +   H         
Sbjct: 189 YDDQLELKRKTIMNAYKFFAPRLVAEKLLPPFDTTVASPLRFGYRTKITPHFDMPKRKQK 248

Query: 60  HIM------FDQQTKERMRIDYFMPGSL-LINALMIEMMATIRLEPLL--RAKLFQIDYL 110
            +       F Q+ + + R D    G    I  +   ++AT  L   L    + F+ ++ 
Sbjct: 249 ELSVRPPLGFGQKGRPQWRKDTLDIGGHGSILDIDECVLATEVLNKGLTNERRKFEQEFK 308

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-ICLDRDYVD- 168
             +    I+      +LD +         +A       I  +   +K   + L +  V  
Sbjct: 309 NYKKGATILLRENTTILDPSKPTLEQLTEEASRDENGDISYVEVEDKKNNVRLAKTCVTN 368

Query: 169 --ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA-TKGIQGD------LLELYCG 219
             + +T       +      F Q N  I   + ++V        +GD      L++ YCG
Sbjct: 369 PRQIVTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCG 428

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +G FS+  ++  D+V+ VEI+  SV  A  
Sbjct: 429 SGLFSICSSKGVDKVIGVEISADSVSFAEK 458


>gi|322514825|ref|ZP_08067844.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
 gi|322119207|gb|EFX91348.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
          Length = 59

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 318 ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLVR 364
           I+Y+ CNP +L RD   L    + +++ A+ D FP+T H+E   L  +
Sbjct: 12  IVYVFCNPATLVRDAEKLIQAGYKLQKAAMIDMFPHTGHLESISLFTK 59


>gi|331265452|ref|YP_004325082.1| putative RNA methyltransferase [Streptococcus oralis Uo5]
 gi|326682124|emb|CBY99740.1| putative RNA methyltransferase [Streptococcus oralis Uo5]
          Length = 51

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++Y+SCN  +L RDL  L   + ++ +   D FP+T   E  V LV+K
Sbjct: 1   MVYVSCNVSTLARDLVKLVKVYDLQYIQSVDMFPHTARTEAVVKLVKK 48


>gi|293412133|ref|ZP_06654856.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B354]
 gi|291468904|gb|EFF11395.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli B354]
          Length = 290

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 66/213 (30%), Gaps = 15/213 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +     +R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
                  F Q NAG+N  M+   L        D
Sbjct: 256 LTFSPRDFIQVNAGVNQKMVARALEWLDVQPED 288


>gi|115372766|ref|ZP_01460072.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|310823456|ref|YP_003955814.1| hypothetical protein STAUR_6230 [Stigmatella aurantiaca DW4/3-1]
 gi|115370247|gb|EAU69176.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309396528|gb|ADO73987.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 394

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 14/118 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           VLAA     G+ L+ +   G F+L LA    RV AVEI++ +    R N AAN + N+++
Sbjct: 215 VLAAQYA-SGEALDCFSYVGGFALQLATRAQRVTAVEISEAAAAQLRDNAAANRLTNLEV 273

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           V  ++ +F            L+D      RF TI +DPP    + DA    ++ Y  I
Sbjct: 274 VTANAFDF------------LRDAVDEGRRFDTIVLDPPSFAKNKDAVAAALRGYKEI 319


>gi|108762606|ref|YP_633707.1| hypothetical protein MXAN_5568 [Myxococcus xanthus DK 1622]
 gi|108466486|gb|ABF91671.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 383

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 13/117 (11%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           + A     G+ L+ +   G F+L LA     V A+EI++ +    R N AAN +NN+ +V
Sbjct: 204 VMAAHYAHGEALDCFSYVGGFALQLATRARHVTAIEISEAASAQLRENAAANKLNNLDVV 263

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
             ++ +F            L+D      RF TI +DPP    + DA    V+ Y  I
Sbjct: 264 VANAFDF------------LRDAVDEGKRFDTIVLDPPSFAKNKDAIPAAVRGYKEI 308


>gi|332018992|gb|EGI59531.1| tRNA (uracil-5-)-methyltransferase-like protein [Acromyrmex
           echinatior]
          Length = 1279

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 77/222 (34%), Gaps = 27/222 (12%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENS-FTQPNAGINVHMLEWVLAATKGIQG-DLLE 215
           T   +  + +DE +      L  +    + F   NA    ++ + V    +  +   +LE
Sbjct: 237 TTFLVGAEALDETVG----NLKVQLAPKTNFWC-NAAGAWNVAKTVADMLEPTKKITILE 291

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           + CG G   L +A     V+ V+ +   +E A      N++ N   +  S  E    +  
Sbjct: 292 IGCGIGVIGLTIASKCREVIGVD-SPSEIEEAEMTCELNNIYNASFIMGSPSEIVTKLNS 350

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS-------- 327
            R+   L + +  +Y       +  R+      +  + +   I+ +     +        
Sbjct: 351 ARD---LHNKNRVTYCIVNAGTNMGRAIEVMTCLRKISSLRRIVMV----TTLTKQSVRA 403

Query: 328 ---LCRDLSI-LSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
              L R +   L       R  + D  P   H E  +L+ R+
Sbjct: 404 ILELARPIETGLGHPFMPIRACVVDTLPTGPHFEVVILMERR 445


>gi|212695649|ref|ZP_03303777.1| hypothetical protein ANHYDRO_00166 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677322|gb|EEB36929.1| hypothetical protein ANHYDRO_00166 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 104

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           N F Q N  +   + +       G    +L+L+CG+   S+ +  + + V+ +EI K ++
Sbjct: 2   NDFYQVNDYMTEKLYKTAKE-FLGQNQKVLDLFCGSATSSIAI--NGNHVVGIEINKNAI 58

Query: 245 EAARYNIAANHVNNVKIVRMSS 266
           + A+ N   N + + K +  ++
Sbjct: 59  KDAKENAELNRLTDYKFIAKNA 80


>gi|322514824|ref|ZP_08067843.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
 gi|322119206|gb|EFX91347.1| 23S rRNA (uracil-5-)-methyltransferase [Actinobacillus ureae ATCC
           25976]
          Length = 93

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 191 NAGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N  +N  M++  L       Q  +L+L+CG GNF+L +A+    V+ VE  +P V  A+ 
Sbjct: 2   NGNLNEKMVDKALEWLNLSAQDRVLDLFCGMGNFTLPIAKQAGFVVGVESVQPMVAQAKQ 61

Query: 250 NIAANHVNNVKIVR 263
           N   + + NV+  +
Sbjct: 62  NQDTSGLKNVEFYQ 75


>gi|238761635|ref|ZP_04622610.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia kristensenii
           ATCC 33638]
 gi|238700149|gb|EEP92891.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Yersinia kristensenii
           ATCC 33638]
          Length = 56

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 317 HILYISCNPDSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRKP 366
            ++YISC+  +L R+   +L+  + + ++ + D FP+T H+E   LL+++P
Sbjct: 2   RVVYISCHSTTLARNNQVLLAAGYRLAQVRMLDMFPHTGHLESMALLMQEP 52


>gi|301097274|ref|XP_002897732.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262106753|gb|EEY64805.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 105

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 314 AYPHILYISCNPDSLCRDLSILS----------TTHTIERLALFDQFPYTRHMECGVLLV 363
           A  HI Y+SCNP S   DL               T+ +  L   D  P+T H+E    L 
Sbjct: 43  APRHICYVSCNPHSQAPDLEAFCAKVKPEMGEVGTYRVRYLQPVDMLPHTPHIETVAWLE 102

Query: 364 R 364
           R
Sbjct: 103 R 103


>gi|168070388|ref|XP_001786793.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660458|gb|EDQ48392.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 296

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 19/138 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN-----LQIFRSEPIHYRMRAEFHIWHDGD 56
              +    YE QL  K D +R+    +   +       +    P  YR +A+  +     
Sbjct: 134 GCQIQHISYEGQLQAKTDIVREAFNRYAGIDQLKLKPILGMDHPWGYRNKAQLQVERRNG 193

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKLF 105
           ++   +++  +   + I         +N            L I +      +  +R  + 
Sbjct: 194 EIIAGLYEADSHSIVDISGCPIQHPKVNEAVEKVKSVLEELRIPLAKENGSKDGVRTIVV 253

Query: 106 QIDYLTSQSDQAIVTLIY 123
           +  +   QSDQ  VTL+ 
Sbjct: 254 RHGF---QSDQLQVTLVC 268


>gi|325120415|emb|CBZ55969.1| putative RNA methyltransferase, TrmA family [Neospora caninum
           Liverpool]
          Length = 524

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 97/299 (32%), Gaps = 39/299 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRL-----RQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWH 53
             + L   YE QL EK   L     R+     +  +     +     + YR R++F I+ 
Sbjct: 44  GCSFLHLSYEAQLREKRALLVSSASRETFFGSEQQDVLRPVVPSPSDLMYRNRSDF-IFL 102

Query: 54  DGDDLYHIMFDQQTKERMRIDYFM----PGSLLINALMIEMMATIRLE------------ 97
             +      F   + + + I         G  +  A+   ++  ++              
Sbjct: 103 LKNGPQLGHFHFDSPQVVDIPQCPKLMPAGRRVYKAVRERLLPILKANRELTIFNRLSGT 162

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLL--DDAWRECAIRLRDALHARKYQIQLIGRA 155
            LL+    +        ++ ++  +  + +   DA    +  L +        +  +  A
Sbjct: 163 GLLKGLTIRSAVDRDGVERVLLGFVCSQTVCNLDALSHLSQALLEDCGPALAGVVAVPMA 222

Query: 156 N--------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           +        +  +     +V + L   G     +    +    NA +       V+ A  
Sbjct: 223 SPGREPSEAEEVVLAGAGHVVQSLGSFGD---LQISIRTSFPTNALLLASFCNTVVEAAA 279

Query: 208 GIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                +  +++ G+G FSL++ R   +V A +    +      N++ N V NV      
Sbjct: 280 LQPHHVVWDIFSGSGLFSLLMGRQCRKVFAFDSRPENFAEMEKNLSFNGVENVTGYVAD 338



 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNP 325
           E  Q+   E++ + ++   +       + + PPR G D A    ++  A P I+YIS +P
Sbjct: 453 EVEQSDDSEQDNDAIEFEGLEP--PDVVILQPPRLGCDKALRRWLRRAAIPRIVYISRHP 510

Query: 326 DSLCRDLSILS 336
             + RD+  L+
Sbjct: 511 PRMFRDIGALT 521


>gi|145640956|ref|ZP_01796538.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae R3021]
 gi|145274470|gb|EDK14334.1| tRNA (uracil-5-)-methyltransferase [Haemophilus influenzae
          22.4-21]
          Length = 79

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 36/54 (66%)

Query: 5  LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDL 58
          L I QY + L +K+++L  ++  F  P++Q+F S   HYRMRAEF IWH+ DD 
Sbjct: 3  LPISQYNELLQKKLEKLTALLHPFNAPDIQVFDSPTSHYRMRAEFRIWHEQDDF 56


>gi|226226069|ref|YP_002760175.1| hypothetical protein GAU_0663 [Gemmatimonas aurantiaca T-27]
 gi|226089260|dbj|BAH37705.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 390

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 13/110 (11%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +G  L+ +  +G+F+L LA   + V AV+I+ P++     +   N + N++ V   + + 
Sbjct: 217 RGRALDCFAYHGSFALHLADRAEHVTAVDISAPALARVHEHAQRNGLTNIEPVEGDAFDV 276

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
            +A  RE              RF TI VDPP    +   +   ++ Y  I
Sbjct: 277 LRAWYRE------------GRRFDTIVVDPPAFAKNRNAIEGALRGYKDI 314


>gi|237835687|ref|XP_002367141.1| RNA methyltransferase, TrmA family, putative [Toxoplasma gondii
           ME49]
 gi|211964805|gb|EEB00001.1| RNA methyltransferase, TrmA family, putative [Toxoplasma gondii
           ME49]
 gi|221506183|gb|EEE31818.1| RNA m5u methyltransferase, putative [Toxoplasma gondii VEG]
          Length = 498

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
               A  SV  +        ++N    +   KE  Q    + + ++++   +       +
Sbjct: 359 GHNSADVSVRHSARRALHEDMSN----QGRGKEMEQRDHVDEDNDKVEFDGLEP--PDVL 412

Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352
            + PPR G D A    ++    P I+Y+S +P  + RD+  L+   + ++ +   D FP+
Sbjct: 413 VLQPPRLGCDKALRRWLRRTTIPRIVYVSRHPPCMFRDIGALTYLGYRLDAVQPIDMFPH 472

Query: 353 TRHMECGVLLV 363
           +  + C   L 
Sbjct: 473 SALVMCVASLT 483



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 9/195 (4%)

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            I  F   S L     + + + +  E + R  L      T    + ++ L  H LL+D  
Sbjct: 84  EITIFDRLSGLGLLKGLTIRSAVDREGVERVLLGFECSQTVTGLEPLLRL-SHSLLED-- 140

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
             C   L   +                 +    +++ + L   G     +    +    N
Sbjct: 141 --CGPALAGVVAVPMTSPGREPSEADQVVLAGAEHIVQSLGDLGDI---QISVRTSFPTN 195

Query: 192 AGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           A +       VLAA       +  + + G G FSL+L R   +V A +    ++     N
Sbjct: 196 ALLLERFCSEVLAAAALQPHHVVWDFFSGCGLFSLLLGRRCRKVFAFDNRAANLVELENN 255

Query: 251 IAANHVNNVKIVRMS 265
           ++ N V NV      
Sbjct: 256 LSRNGVENVDGYLAD 270


>gi|224005783|ref|XP_002291852.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972371|gb|EED90703.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 645

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 77/208 (37%), Gaps = 34/208 (16%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL------LELYCGNGNFSLVLARH 230
            +      N F Q N     H++  +      ++ ++      +ELY G G   L ++  
Sbjct: 453 EVPLHFPPNVFRQANLDAFTHIVGRIRQRMLQLRKEMKHLPACVELYGGVGTIGLHISDV 512

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
              +++ +                  NN K    S K F   ++   ++ R    D+ + 
Sbjct: 513 VASLVSSDENP---------------NNAKCFYDSVKTFPDHIQSRLDYKRKNASDMIAT 557

Query: 291 ------RFKTIFVDPPRSGLDDATVGMV--QAYPHI---LYISCNPDSLCRDLSIL--ST 337
                 + + + VDPPR GLD   V  +    + ++   +Y+SC   +  RD + L  S 
Sbjct: 558 ESTLIQKSQVLVVDPPRKGLDSEVVDYLCNTGWKNMKLAVYVSCGFQAFQRDCNALMKSG 617

Query: 338 THTIERLALFDQFPYTRHMECGVLLVRK 365
              +E    +  FP +  +E     V K
Sbjct: 618 KWKLEFAEGYLLFPGSDAIETLAFFVPK 645


>gi|304373298|ref|YP_003856507.1| Uncharacterized RNA methyltransferase [Mycoplasma hyorhinis HUB-1]
 gi|304309489|gb|ADM21969.1| Uncharacterized RNA methyltransferase [Mycoplasma hyorhinis HUB-1]
          Length = 266

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 11/172 (6%)

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL--LDDAWRECAIRLRDA 141
           N   I++   I +E     K F+     +  D A+     H    LDD        L D 
Sbjct: 100 NIAKIDLDKEINIEYFQGNKEFRYRNKITLFDGALYQKKTHNKIYLDDFL------LTDI 153

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR-TLIYRQIENSFTQPNAGINVHMLE 200
                 + ++I R    K+ +      E         L +R   NSF Q N  +  H  +
Sbjct: 154 KPKTNLKGKIILR-KLNKLIIGSKKDIELFNFDDLLGLRFRININSFYQVNKEVAQHAYQ 212

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            ++   +     +L+LY G G  SL++A+   +V+AVE  K + + A +N  
Sbjct: 213 RIIDFVQEGDF-VLDLYSGIGTISLLVAQKAKKVIAVEENKFAHKDALFNQK 263


>gi|30267784|gb|AAP21765.1| Trm2p [Saccharomyces cerevisiae]
          Length = 77

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSIL------STTHT 340
                ++ +DPPR G D+  +  + AY    I+YISCN  S  RD+          + H 
Sbjct: 4   PSENTSVILDPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLKETENGSAHQ 63

Query: 341 IERLALFDQFPYTR 354
           IE +  FD FP T 
Sbjct: 64  IESIRGFDFFPQTH 77


>gi|255025031|ref|ZP_05297017.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
           FSL J1-208]
          Length = 159

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 15/134 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQI----FRSEPIHYRMRAEFHIWHDGDD 57
             +L    Y+ QLA K +++ + M      N+ +        P  YR +++  +      
Sbjct: 19  GCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVDVQETLGMENPWRYRNKSQVPVGFVHGK 78

Query: 58  LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106
           L    + +++   + +   +  +            ++     E       +  +R  + +
Sbjct: 79  LTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEKTGKGDIRHIMTR 138

Query: 107 IDYLTSQSDQAIVT 120
             + T Q    +VT
Sbjct: 139 FAHTTGQLMIVLVT 152


>gi|221485324|gb|EEE23605.1| RNA m5u methyltransferase, putative [Toxoplasma gondii GT1]
          Length = 498

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
               A  SV  +        ++N    +   KE  Q    + + ++++   +       +
Sbjct: 359 GHNSADVSVRHSERRALHEDMSN----QGRGKEMEQRDHVDEDNDKVEFDGLEP--PDVL 412

Query: 296 FVDPPRSGLDDATVGMVQA--YPHILYISCNPDSLCRDLSILS-TTHTIERLALFDQFPY 352
            + PPR G D A    ++    P I+Y+S +P  + RD+  L+   + ++ +   D FP+
Sbjct: 413 VLQPPRLGCDKALRRWLRRTTIPRIVYVSRHPPCMFRDIGALTYLGYRLDAVQPIDMFPH 472

Query: 353 TRHMECGVLLV 363
           +  + C   L 
Sbjct: 473 SALVMCVASLT 483



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 9/195 (4%)

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            I  F   S L     + + + +  E + R  L      T    + ++ L  H LL+D  
Sbjct: 84  EITIFDRLSGLGLLKGLTIRSAVDREGVERVLLGFECSQTVTGLEPLLRL-SHSLLED-- 140

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
             C   L   +                 +    +++ + L   G     +    +    N
Sbjct: 141 --CGPALAGVVAVPMTSPGREPSEADQVVLAGAEHIVQSLGDLGDI---QISVRTSFPTN 195

Query: 192 AGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           A +       VLAA       +  + + G G FSL+L R   +V A +    ++     N
Sbjct: 196 ALLLERFCSEVLAAAALQPHHVVWDFFSGCGLFSLLLGRRCRKVFAFDNRAANLVELENN 255

Query: 251 IAANHVNNVKIVRMS 265
           ++ N V NV      
Sbjct: 256 LSRNGVENVDGYLAD 270


>gi|291483115|dbj|BAI84190.1| hypothetical protein BSNT_01152 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 338

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 45/137 (32%), Gaps = 18/137 (13%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-------VPNLQIFRSEPIHYRMRAEFHIWHD 54
              L    YE QL  K  +++ ++             +  +   +P +YR +A+  +   
Sbjct: 85  GCQLQHMTYEGQLLFKQKQVKDVLERIGKLDLSNVTVHPTLGMEDPWNYRNKAQVPVGER 144

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAK 103
              L    + Q++ + + +   +               +     ++     R +  LR  
Sbjct: 145 EGGLVAGFYQQRSHDIIEMSACLIQQSKNDEAVQAVKDICAKYGVKAYNEERHKGWLRHI 204

Query: 104 LFQIDYLTSQSDQAIVT 120
           + +   +T +     +T
Sbjct: 205 MVRYGVVTGEMMIVFIT 221


>gi|293557122|ref|ZP_06675676.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1039]
 gi|293569132|ref|ZP_06680439.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071]
 gi|291588179|gb|EFF20020.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071]
 gi|291600691|gb|EFF30989.1| tRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1039]
          Length = 195

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLY 59
           L   +YEQQL  K  ++  +M              +  +EP  YR +A+  +      L 
Sbjct: 88  LAHLKYEQQLVFKQKQVEHVMAKIAKMPEVPVLPTVGMAEPFGYRNKAQIPVRRIDGQLA 147

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR 95
              + + + + + I+ F     +I+  +  +   ++
Sbjct: 148 TGFYKKNSHDLVPIEDFYIQDPVIDQAIKVVRDILQ 183


>gi|328785368|ref|XP_003250590.1| PREDICTED: hypothetical protein LOC100578201 [Apis mellifera]
          Length = 1399

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 29/239 (12%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
            +L+ +            T   +  + +DE +      L  +    +    N+    ++ 
Sbjct: 361 KSLYCKSTNRYDGTAVTDTTFLVGSEALDEIVG----GLKVQLAPKTNFWSNSAGAENVA 416

Query: 200 EWVLAATKG-IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
             V+       +  +LE+ CG G   L++A    +V+ V+ +   VE A      N++ N
Sbjct: 417 NAVIDLLAPSPKTTVLEIGCGIGLIGLMMASKCQQVIGVD-SPSEVEEAEMTCELNNIKN 475

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
              +  S  E T  +    +  +   I   +           R+      +  + +   I
Sbjct: 476 ASFIMGSPSEVTNQIIAAVKNRKTCAIINANTNIG-------RAIEVMTALRKIPSLKRI 528

Query: 319 LYISCNPDSL----CRDLSILSTT--------HTIERLALFDQFPYTRHMECGVLLVRK 365
           + I     +L     R +  L+                 + D  P   H E  +L+ R+
Sbjct: 529 VMI----TTLTKQSVRAILELARPGDHGHGSAFIPVLACVVDTLPIGPHFEAVILMQRR 583


>gi|23336858|ref|ZP_00121996.1| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Bifidobacterium longum
           DJO10A]
          Length = 194

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 18/191 (9%)

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR---ECAIRLRDA 141
              IEM+A     P +R +             A  TL+     +  W    E   ++R +
Sbjct: 4   RTRIEMIADDNGMPSMRRRGTHNRVAIDTMPLATRTLLDVAKREHVWEGGFEPGSQIRLS 63

Query: 142 LHARKYQIQLIGRANKTKICL-------DRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
           +   + +I     A+     L           + E++T+ G T  Y+   N F Q +   
Sbjct: 64  VPEPRGEIVDTAAADDNYAVLVDGELRAGSQLLTEQVTINGTTFDYQVDANGFWQVHRQA 123

Query: 195 NVHMLEWVLAATKGI-----QGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEA 246
            + +   V+    G         + +LY G+G F+L LA       R+L+VE A+ +V+ 
Sbjct: 124 PIALGTHVINLVNGQLQSAADAVIWDLYSGSGLFTLPLATMTGERCRMLSVEGARVAVKN 183

Query: 247 ARYNIAANHVN 257
           A+ N+ A ++N
Sbjct: 184 AQRNLRAMNLN 194


>gi|40806392|gb|AAR92130.1| putative RNA methyltransferase [Streptococcus suis]
          Length = 256

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 20/173 (11%)

Query: 10  YEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           Y  QLA K  ++   +              +    P+ YR +A   +      L    F 
Sbjct: 88  YPAQLAFKKKQVENSLRKIAGISEIAVADTLGMDSPLAYRNKAAVPVRRVNGQLETGFFR 147

Query: 65  QQTKERMRIDYFMPGSLLINALMI---EMMATIRLEP--------LLRAKLFQIDYLTSQ 113
           + + + + I+ F      I+AL++   +++  + L+P        L+R  + +  + + Q
Sbjct: 148 KNSHDLVPIEDFYIQHKEIDALVLATRDLLRKLDLKPYDEKEQTGLVRNIVVRRGHYSGQ 207

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
               +VT    R           RL          +Q I   N T     +++
Sbjct: 208 LMLVLVT---TRPKIFRVETLIERLTSQFPNLVSIVQNINDQN-TNAIFGQEF 256


>gi|224418311|ref|ZP_03656317.1| tRNA (uracil-5-)-methyltransferase [Helicobacter canadensis MIT
           98-5491]
          Length = 145

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHI 61
            G  +++  E  L  KVD  +Q++    +    I       +R R E  I+   D + + 
Sbjct: 10  GGCSILE--ECSLESKVDYAKQLL---GINQCDIVSLRQDSFRARCELGIFFKDDKINYA 64

Query: 62  MFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLE--PLLRAKLFQIDYLTSQSDQAIV 119
           M  ++ K+ + I+        +   +  +   +  E     R KLF I+ L++Q+D+ ++
Sbjct: 65  M--RKGKQFVCIENCCNLLESLQKFLPVLKKKLNQEFFKDFRQKLFAIEVLSTQNDEILL 122

Query: 120 TLIYHRLLDDAWRECAIRLRDAL 142
           TLIYH+ L++ W E A  L+ AL
Sbjct: 123 TLIYHKKLNETWLENAKELKKAL 145


>gi|62719446|gb|AAX93323.1| RNA methyltransferase TrmA family [Lactobacillus sanfranciscensis]
          Length = 131

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 6/130 (4%)

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD----E 169
           ++   V  I +       ++  +R+ + L      +Q +     T +    + +     E
Sbjct: 1   TNDVQVVFITNSNKLIKKQKLIMRIAEELPEVTSIMQNVNPGE-TPLIWGDETIHLAGSE 59

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA 228
            +T     L +     +F Q N+ +   +      A      D L++ Y G G   L LA
Sbjct: 60  TITEKIDGLAFDLSPRAFLQLNSIMTPKLYHLAGEALNLDASDYLVDAYSGVGTIGLTLA 119

Query: 229 RHFDRVLAVE 238
                V  ++
Sbjct: 120 NQVAEVRGMD 129


>gi|168703282|ref|ZP_02735559.1| methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 395

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 26/137 (18%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A        L+ +C +G F L  AR     VL ++ ++P++E AR N A N + NV
Sbjct: 213 RAAVARLAPGKRFLDAFCYSGGFGLHAARAGAAEVLCLDGSEPALELARRNAALNGLENV 272

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
              R++             FN L  +     +F  + +DPP+   +   +   ++ Y  +
Sbjct: 273 AFERVNV------------FNHLGTLATSGRKFDVVVLDPPKFARNRGAIPEALKGYRRL 320

Query: 319 ------------LYISC 323
                       + +SC
Sbjct: 321 HQLALKLLAPDGVLVSC 337


>gi|46205207|ref|ZP_00048863.2| COG2265: SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 92

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 11/85 (12%)

Query: 295 IFVDPPR------SGLDDATVGMVQ-AYPHILYISCNPDSLCRDLSIL-STTHTIERLAL 346
           +  DPP        G       + +   P ++ ++C+P +  RD +IL +  + +ER+  
Sbjct: 1   MVFDPPXXXXGXXPGXXRXVRRIAESKVPLVIGVACDPGTFARDAAILIAGGYRLERVTP 60

Query: 347 FDQFPYTRHMECGVLLVRK---PSG 368
            DQF ++ H+E   +  ++   P+G
Sbjct: 61  VDQFAWSGHVELVGVFRKEARAPAG 85


>gi|328479442|gb|EGF48726.1| RNA methyltransferase [Lactobacillus rhamnosus MTCC 5462]
          Length = 201

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 10  YEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           Y  QL  K D + Q +  F+    Q       I  + P HYR +A+F +      +   +
Sbjct: 91  YPAQLRFKRDVVAQALAKFKPLGWQHYDLKPTIGMTHPTHYRNKAQFPVREIDGHVRAGL 150

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
           +   +   + + +F+  + L   ++  +   +    +
Sbjct: 151 YAPGSHRLIPLTHFLTQAPLTMKVVTTLCQLLEDLQI 187


>gi|323180216|gb|EFZ65768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Escherichia coli 1180]
          Length = 274

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 15/198 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH--DGDDLY 59
                    + Q   K   L ++M   +    ++    P  YR RA   + +      L 
Sbjct: 89  GCQQQHASVDLQQRSKSAALARLM---KHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQ 145

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
                  + + + +         + AL+ ++ A +    ++R  L  ++ + + S   ++
Sbjct: 146 MGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQVMRH-LGHVELVQATSGTLMI 204

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
            L +   L  A RE   R     H+    + L   +   +         E        L 
Sbjct: 205 -LRHTAPLSSADREKLERFS---HSEGLDLYLAPDSEILETVSG-----EMPWYDSNGLR 255

Query: 180 YRQIENSFTQPNAGINVH 197
                  F Q NAG+N  
Sbjct: 256 LTFSPRDFIQVNAGVNQK 273


>gi|328772089|gb|EGF82128.1| hypothetical protein BATDEDRAFT_23450 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 623

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 122/357 (34%), Gaps = 66/357 (18%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMM-------LAFQVPNLQIFRSEPIHYRM-----RAEF 49
              ++   Y++Q++ K DR+           LA  +    +  S+   YR      R + 
Sbjct: 191 GCQMMHMSYDRQMSMKHDRVWSAFVQTLGESLAGHLVMPTLSTSKQTGYRHYIHGHRGKV 250

Query: 50  HIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY 109
            +     D +  +   +  + + ID     +  +NA    M  T+RL          I  
Sbjct: 251 PVGQQ-MDCFGFLGKGEANQVIDIDSCSVSNTTVNAGFASMKNTMRL----------IRN 299

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-------------LIGRAN 156
                  A    I            +  L   +HAR    Q              + +A 
Sbjct: 300 YGPMEQPASKHFICATASPPNNMSFSEFLPQFIHARNVVRQAKLHGIHSGIDDKDLIQAK 359

Query: 157 KTKICLDRDYV---DERLTVAGRTLIYRQIENSFTQPNAGI-NVHMLEWVLAATKGI--- 209
           K         V   +  +T      I R         ++ + N++++  +++  + +   
Sbjct: 360 KVLASWGSGIVTNKETIVTSLVDDTIIRFPAG-----HSPLDNLYLVPTMVSFIRDLIHT 414

Query: 210 ------QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                 +  L++ YC +G F L+LA  F+ V+A+E      + A  N A N +NN  +  
Sbjct: 415 HLPAQDRHTLVDAYCRSGVFGLLLAPLFEHVVAIEAHTSLSKCAFSNAADNQINNYTLHN 474

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHIL 319
            S +E+   +  +              +   +F   P  GL  DA   ++Q  P ++
Sbjct: 475 GSVEEWFSTLSNQPNL-----------QVSMVFCHSPVQGLSVDALDRLLQFGPRMI 520


>gi|283778024|ref|YP_003368779.1| methyltransferase small [Pirellula staleyi DSM 6068]
 gi|283436477|gb|ADB14919.1| methyltransferase small [Pirellula staleyi DSM 6068]
          Length = 434

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNN 258
            +  A       +L+++C  G F++  +RH     VL V+ +K +V  A+ N   N + N
Sbjct: 237 RLAVAKYFAGRKVLDMFCYTGGFAMNASRHGQAAEVLGVDTSKRAVAQAQKNAEINGLTN 296

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH 317
           V                   F  L+       +F  I +DPP+           +QAY  
Sbjct: 297 VTFEAGDG------------FQSLEKFATEGRKFDAIVLDPPKFARSRSQVDQAIQAYHR 344

Query: 318 I 318
           +
Sbjct: 345 L 345


>gi|257434030|ref|ZP_05610381.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus E1410]
 gi|282925136|ref|ZP_06332796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus C101]
 gi|257280956|gb|EEV11100.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus E1410]
 gi|282313094|gb|EFB43492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
           subsp. aureus C101]
          Length = 229

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 51/142 (35%), Gaps = 17/142 (11%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLA---FQVPNL--QIFRSEPIHYRMRAEFHIWH-DG 55
              L    YE QL  K +++  +      F    +   +  ++P  YR +++  +   + 
Sbjct: 82  GCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQ 141

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKL 104
           +++    + Q++ + + +   +               ++  L + +      + L+R  +
Sbjct: 142 NEVIMGFYRQRSHDIIDMGSCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLV 201

Query: 105 FQIDYLTSQSDQAIVTLIYHRL 126
            +  Y T +     VT   +  
Sbjct: 202 VRTGYHTDEMMVIFVTNGKNWP 223


>gi|150401285|ref|YP_001325051.1| protein of unknown function Met10 [Methanococcus aeolicus Nankai-3]
 gi|150013988|gb|ABR56439.1| protein of unknown function Met10 [Methanococcus aeolicus Nankai-3]
          Length = 381

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 23/132 (17%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L         +L++ C  G FS+        V+ V+I+  ++E A  N+  N++ N + +
Sbjct: 203 LEKYIKKGDKVLDICCYTGGFSVHCGIKGASVVGVDISDKAIEVAGENMELNNIQNYEFI 262

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY------- 315
             ++ +  + M    E            +F  + +DPP        +             
Sbjct: 263 NGNAFDVMRDMIGNNE------------KFDVVILDPPTFTKSKKDIKTALKAYSTMNTI 310

Query: 316 ----PHILYISC 323
                  L+ISC
Sbjct: 311 GLKLSKRLFISC 322


>gi|307207891|gb|EFN85452.1| Putative methyltransferase CXorf34 [Harpegnathos saltator]
          Length = 1334

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 29/221 (13%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLEL 216
           T   +  + +DE +     +L  +    +    NA   +++ + V+   K      +LE+
Sbjct: 297 TTFLVGAEALDEVVG----SLKVQLSPKTNFWSNAAGALNVAKAVMDMLKPTPKVTVLEI 352

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
            CG G   L++A     V+ V+ +   +E A      N++ NV  V  S  +    +   
Sbjct: 353 GCGIGVIGLMMASKCLEVIGVD-SPSEIEEAEMTCDLNNITNVSFVMGSPADVVNKISAA 411

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS--------- 327
            +      I   +        +  R+      +  + +   I+ +     +         
Sbjct: 412 VKNRVTYAIVNAN-------TNMGRAVEVMTCLRKLTSLRRIVMV----TTLTKQSVRAV 460

Query: 328 --LCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
             L R +   L       R  + D  P   H E  +L+  +
Sbjct: 461 LELARPIEDGLGHPFMPIRACVVDTLPIGPHFETVILMEHR 501


>gi|289523765|ref|ZP_06440619.1| hydrogenase-4, F subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503457|gb|EFD24621.1| hydrogenase-4, F subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 393

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 13/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        ++L+ +C  G F L  AR     V  V++++ +V  AR N   N  + V
Sbjct: 210 RALLKDISKGANVLDAFCYTGGFGLNAARFGAKSVFGVDVSEDAVATARRNAGLNGFDAV 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
                              F+RL++++    R+  I +DPP    +   V   ++ Y  I
Sbjct: 270 CRY-----------DVANVFDRLRELESKGQRYDVIVLDPPAFAKNKKAVEGALRGYKEI 318


>gi|118586270|ref|ZP_01543726.1| RNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
 gi|118433286|gb|EAV39996.1| RNA methyltransferase [Oenococcus oeni ATCC BAA-1163]
          Length = 183

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 58/171 (33%), Gaps = 25/171 (14%)

Query: 37  RSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYF---MPGSLLINALMIEMMAT 93
            + P  YR +A+F +      +   ++ + + + + +      MP ++ +   ++  +  
Sbjct: 1   MTNPYEYRNKAQFQVRLIDGHVAAGLYKENSHDLVDLPTCSVQMPATMTVMRQVVAWLEE 60

Query: 94  I--------RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
           +            +++  + +    T +     +T            +  +++ + L   
Sbjct: 61  LQVPIYDEEHNSGIVKTIVVREAAATGEIQLVFITNT---PKLPKKHQLLMKIAEKLPMV 117

Query: 146 KYQIQLIG-------RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
              +Q I          ++T +   +  + E L      L++     +F Q
Sbjct: 118 VSVMQNINAGKTSLIWGDQTTLLAGKPTITEEL----DGLVFDLSARAFFQ 164


>gi|307177348|gb|EFN66521.1| Putative methyltransferase CXorf34 [Camponotus floridanus]
          Length = 1315

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 79/219 (36%), Gaps = 21/219 (9%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLEL 216
           T   +  + +DE +      L  +    +    NA    ++ + V    K   +  +LE+
Sbjct: 281 TTFLVGAEALDEVVG----NLKLQLTPKTNFWSNAAGAWNVAKTVADMLKPTAKTTILEV 336

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
            CG G   L +A     V+ ++ +   +E A+     N + NV  +  S  E    +   
Sbjct: 337 GCGIGIIGLTIAPKCREVIGID-SPSEIEEAKMTCNLNKIYNVSFIMGSPFEVVNKINAA 395

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS--------- 327
           R+   L + +  +Y       +  R+     ++  + +   I+ ++    +         
Sbjct: 396 RD---LHNKNRVTYCIVNTNTNMGRAIEVMTSLRKITSLRRIVMVT--ALTKQSVRAILE 450

Query: 328 LCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365
           L R +   L       R  + D  P   H +  +L+ R+
Sbjct: 451 LARPIENDLGHPFMPIRACVVDTLPNGPHFDAVILMERR 489


>gi|290968477|ref|ZP_06560016.1| conserved domain protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781473|gb|EFD94062.1| conserved domain protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 67

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 191 NAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N      +    L+ A       +++ YCG G  SL LA+    V+ +EI   ++E A  
Sbjct: 2   NQEQAEKLYNIALSYADLKGNETVIDAYCGTGTISLYLAQKAKHVIGIEIIPAAIENAEK 61

Query: 250 NIA 252
           N  
Sbjct: 62  NAE 64


>gi|328953673|ref|YP_004371007.1| hypothetical protein Desac_1995 [Desulfobacca acetoxidans DSM
           11109]
 gi|328453997|gb|AEB09826.1| hypothetical protein Desac_1995 [Desulfobacca acetoxidans DSM
           11109]
          Length = 386

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 3/124 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LAA    QG++L+ +   G F+L +A H   V+AVE +  S+  A+ N   N ++NV  +
Sbjct: 207 LAAAAWAQGEVLDCFSYQGGFALHVASHAQHVVAVESSALSLGLAQDNARLNRMHNVDWI 266

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           + +  +F +      +F  L  +D  ++   R            L+   + +++     +
Sbjct: 267 QANCFDFLKKAHASSKFYDLIILDPPAFAKSRADQPAAFRGYQDLNRRALQLLKPGGIFI 326

Query: 320 YISC 323
             SC
Sbjct: 327 TCSC 330


>gi|108803688|ref|YP_643625.1| SAM-dependent methyltransferase [Rubrobacter xylanophilus DSM 9941]
 gi|108764931|gb|ABG03813.1| SAM-dependent methyltransferase [Rubrobacter xylanophilus DSM 9941]
          Length = 391

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LAA +  +G +L+++   G F+L  AR    V AV+ +  ++E AR N   N + N+  V
Sbjct: 211 LAAGRHARGRVLDVFSYGGGFALHAARRAASVEAVDSSAAALEQARENARLNGLGNLSFV 270

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
             ++ +  +A     E             + T+ +DPP             +AY  I
Sbjct: 271 EANAFDLLRARSDAGEA------------YDTVILDPPAFARTRRDLPRAARAYKEI 315


>gi|123493233|ref|XP_001326235.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121909147|gb|EAY14012.1| hypothetical protein TVAG_478370 [Trichomonas vaginalis G3]
          Length = 472

 Score = 69.7 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 122/355 (34%), Gaps = 25/355 (7%)

Query: 9   QYEQQLAEKV----DRLRQMMLAFQVPNLQIFRSEPIHYR-MRAEFHIWHDGDDLYHIMF 63
            Y  Q+  K       +  +    Q PN+ +  S  +++   R    I  +  +   I F
Sbjct: 117 PYPAQIRTKELATMKEISSLFNT-QFPNITVLPSPLLNFFCNRCVLSIGFNQSNQPDIGF 175

Query: 64  DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS----QSDQAIV 119
              TK    I      +     L +  +  I    +   K+   + LT      +    +
Sbjct: 176 ISGTKSAPFI--VPLQNTSCFPLEVYEIVKIFKNIISHTKIMPYERLTGSGYWTALNIQI 233

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
               + +  ++ +E    ++D L +     + +   +K  + + +  +   L      + 
Sbjct: 234 AETGNIITIESHKEIPKDIQDQLTSAYESYENLCIVSKNILTILKGSL--TLHQKIYDID 291

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVE 238
           ++  ++ +  PN       ++++      +   +L+ L    G  SL L  H  ++  V+
Sbjct: 292 FKVKQSIYLPPNISAFQEFIKYLNEMIHVLGIEELISLNSNYGFLSLCLHEHVKKLTCVD 351

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               ++E ++     N + NV+ V  SS +    +   ++  +   +  +      + + 
Sbjct: 352 NDNHAIEHSKKTAKNNQIENVEFVNDSSDDSIVNLLSSKDLFKTAVLIEYRKAPSFLDLI 411

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
                     V +V              +  ++LS+    +T+    L D  P+T
Sbjct: 412 TNVFNWRPMYVILVAEG----------TTFPKELSLFKEGYTLFDTILCDMTPHT 456


>gi|269986188|gb|EEZ92500.1| protein of unknown function Met10 [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 163

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 41/69 (59%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  +L+++CG G F++ +A+    V A++I K ++E  + NI  N ++N+      SK+ 
Sbjct: 15  KERVLDMFCGVGPFTIPIAKIAKNVTAIDINKNAIELLKKNIKLNKISNIDYYCGDSKKI 74

Query: 270 TQAMRRERE 278
           T+++  + +
Sbjct: 75  TKSLEGKFD 83


>gi|224038935|gb|ACN38364.1| putative sisomicin methyltransferase [Micromonospora inyonensis]
          Length = 320

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 27/146 (18%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
              L++ CG+G  SLVLA  ++ VL V++   +V  +R N A N + NV        E  
Sbjct: 125 ARALDMGCGSGVLSLVLADRYESVLGVDVNPRAVALSRLNAALNGLTNVTFREGDMFE-- 182

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCR 330
                               RF  I  + P +      V +++A   IL      ++  R
Sbjct: 183 ----------------PAEGRFSRIVFNSPTNEEGSEFVDLLEAGEPIL------ETFFR 220

Query: 331 DL-SILSTTHTIE-RLALFDQFPYTR 354
           D+   L +   +E  LA+ D +P T 
Sbjct: 221 DVPRKLESGGVVEVNLAMND-YPGTP 245


>gi|328951117|ref|YP_004368452.1| methyltransferase small [Marinithermus hydrothermalis DSM 14884]
 gi|328451441|gb|AEB12342.1| methyltransferase small [Marinithermus hydrothermalis DSM 14884]
          Length = 388

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 24/167 (14%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE------NSFTQPNAGINVHMLEWVL 203
           +L G A + ++      V ER+ V    L Y           +F         + L    
Sbjct: 156 RLEGLAEEVRVLHGE--VPERILVHEGPLRYWVDPYRGQKTGAFL----DQRDNRLALAR 209

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                +    L+++  +G+F+L LAR   +V AV+ +  ++  A  N   N + N++ + 
Sbjct: 210 HLEHRVLTRALDVFSYHGSFALHLARFAQQVEAVDTSADALARAEANARENQLVNLEFIE 269

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            ++ +F +   R  E            R+  I +DPP      A + 
Sbjct: 270 ANAFDFLRHKARAGE------------RYDCIVLDPPAFAKKRADLE 304


>gi|260583348|ref|ZP_05851121.1| predicted protein [Haemophilus influenzae NT127]
 gi|260093619|gb|EEW77534.1| predicted protein [Haemophilus influenzae NT127]
          Length = 80

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 46/79 (58%)

Query: 45  MRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL 104
           MRAEF +WHD  DLYHIMFDQ TK+R R+D F   + LIN +M  ++  ++ + L     
Sbjct: 1   MRAEFRVWHDQGDLYHIMFDQATKQRYRVDSFPIANQLINQMMQAILPLLKAKDLTHLFF 60

Query: 105 FQIDYLTSQSDQAIVTLIY 123
               YL    +  I+ LIY
Sbjct: 61  HNAYYLEIGENFIIIRLIY 79


>gi|188534014|ref|YP_001907811.1| Protein methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|188029056|emb|CAO96924.1| Protein methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 281

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 17/178 (9%)

Query: 94  IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLI 152
           +++   LRA + Q+    S    A + L        AW         DA   ++    L+
Sbjct: 1   MQIRNWLRAAIAQLSESESPKRDAEILLGLVTGKSRAWLIGFDDHELDAATLKRLDALLV 60

Query: 153 GRANKTKICL---DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
            RA    I     +R++    L V   TLI R   +S           ++E  LA   G 
Sbjct: 61  RRAAGEPIAYLTGEREFWSLSLCVTPDTLIPR--PDS---------EVLVEQALAHLPGG 109

Query: 210 QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              +L+L  G+G  +L LA  R   RVL V+    +V  A++N A   + N   ++  
Sbjct: 110 PCSVLDLGTGSGAIALALASERADCRVLGVDRIPAAVALAQHNAARLGLANATFMQGD 167


>gi|282851390|ref|ZP_06260755.1| TRAM domain protein [Lactobacillus gasseri 224-1]
 gi|282557358|gb|EFB62955.1| TRAM domain protein [Lactobacillus gasseri 224-1]
          Length = 231

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ-------IFRSEPIHYRMRAEFHIWHDGDD 57
           L    Y +QL  K   + + +  +   +         I      HYR +A++ I  +   
Sbjct: 88  LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPAPNDWHYRNKAQYQIEFNKGK 147

Query: 58  LYHIMFDQQTKERMRIDYFMPGS-----------LLINALMIEMMATIRLEPLLRAKLFQ 106
               ++   ++  + +      +            LI+ L I +    R    ++  + +
Sbjct: 148 SKLGLYAPNSRRLIDLPEMPTQTKETQKTEREIKKLIDKLHIRIADFRRHNDGIKTIVVR 207

Query: 107 IDYLTSQSDQAIVTL 121
               T +    ++T+
Sbjct: 208 QSQATGEIQVTLITI 222


>gi|257485909|ref|ZP_05639950.1| 23S rRNA 5-methyluridine methyltransferase [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 242

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 16/225 (7%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             ++    +E+QLA K   L + +L         + +      + YR RA   +  D   
Sbjct: 26  GCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLIGAELAYRRRARVAVRWDAKA 85

Query: 58  LY--HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                      +++ + I++       +  +M E+   ++     +A L  ++  +    
Sbjct: 86  KRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQA-LGHVELFSG--- 141

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             + T +  R            L+        Q+ L G           D +  RL    
Sbjct: 142 --VATAVLLRHTAPLAEADLALLQAFCSKHGAQLWLHGEGEPQPASPG-DTLGYRLEPWN 198

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
             L +R     F Q NA +N  M+E  L      + + +++L+CG
Sbjct: 199 LQLAWR--PGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCG 241


>gi|116749298|ref|YP_845985.1| hypothetical protein Sfum_1865 [Syntrophobacter fumaroxidans MPOB]
 gi|116698362|gb|ABK17550.1| SAM-dependent methyltransferase [Syntrophobacter fumaroxidans MPOB]
          Length = 389

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 17/111 (15%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANH-VNN 258
             L    G +  +L+L+C  G + L  AR    RV+ V+ +  +V+ AR N AAN+  + 
Sbjct: 209 RALLRWIGGK-RVLDLFCYTGAWGLAAARGGASRVVGVDASAEAVDQARSNAAANNVADR 267

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            + +R  + ++ + +R+                F  I +DPP      + +
Sbjct: 268 CEFIRSEALQYLRTLRK--------------GDFDVIVLDPPAFAKTKSAL 304


>gi|302389423|ref|YP_003825244.1| SAM-dependent methyltransferase [Thermosediminibacter oceani DSM
           16646]
 gi|302200051|gb|ADL07621.1| SAM-dependent methyltransferase [Thermosediminibacter oceani DSM
           16646]
          Length = 390

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 15/111 (13%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
            ++LE +C  G+F+L  AR    +VLA + +K +VE AR N   N +N+  +    ++ +
Sbjct: 217 AEVLECFCYTGSFALSAARYGAKKVLAFDSSKDAVELARENAVLNGLNDICEFQEGNAFD 276

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
             +     R+            +F  + +DPP    +   +   ++ Y  I
Sbjct: 277 VLRQFYDSRK------------KFDVVILDPPAFAKNKKALESAIRGYKEI 315


>gi|15605998|ref|NP_213375.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
 gi|2983178|gb|AAC06779.1| hypothetical protein aq_533 [Aquifex aeolicus VF5]
          Length = 380

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 16/102 (15%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L+L+C +G FS+  A    +V+ V+I K +VE AR N   N V     V  ++ +F 
Sbjct: 212 DRVLDLFCYSGGFSVYCANRGAKVVGVDINKRAVELARENAKLNSVK-ADFVLGNAFDFI 270

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           Q  + E               +  I  DPP           +
Sbjct: 271 QESKEE---------------WDLIIADPPAIAKTKKEKESI 297


>gi|308272551|emb|CBX29155.1| hypothetical protein N47_J01360 [uncultured Desulfobacterium sp.]
          Length = 388

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L+ +C +G F+L +A++  +V A +I+K ++E ++ N   N + N+     +     
Sbjct: 217 GSGLDCFCYSGGFALNMAKNCCQVEAFDISKDAIELSKKNALLNGMENISFEVDNV---- 272

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
                   F+RLK  D    +F TI +DPP      A      + Y  I
Sbjct: 273 --------FDRLKVYDSQKKKFDTIVLDPPAFAKSRAHVQAAARGYKEI 313


>gi|197124168|ref|YP_002136119.1| hypothetical protein AnaeK_3779 [Anaeromyxobacter sp. K]
 gi|196174017|gb|ACG74990.1| protein of unknown function Met10 [Anaeromyxobacter sp. K]
          Length = 389

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A +   G  L+ +   G F+L LAR  +RV AVE+   +    R N A N   N+++V
Sbjct: 210 LRAGEYATGRCLDCFSYAGGFALHLARRAERVTAVEMQPVAAGLLRENAALNRAENLEVV 269

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHIL 319
             ++ ++ +    E     L  +D  ++      +   R G  +  +  +Q       ++
Sbjct: 270 EENAFDYLRDRSEEEPAFDLVVLDPPAFAKNKESLPAARRGYKEVNLRALQVLVPGGILV 329

Query: 320 YISC 323
             SC
Sbjct: 330 TASC 333


>gi|220918947|ref|YP_002494251.1| protein of unknown function Met10 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956801|gb|ACL67185.1| protein of unknown function Met10 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 389

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A +   G  L+ +   G F+L LAR  +RV AVE+   +    R N A N   N+++V
Sbjct: 210 LRAGEYATGRCLDCFSYAGGFALHLARRAERVTAVEMQPVAAGLLRENAALNRAENLEVV 269

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHIL 319
             ++ ++ +    E     L  +D  ++      +   R G  +  +  +Q       ++
Sbjct: 270 EENAFDYLRDRSEEEPAFDLVVLDPPAFAKNKESLPAARRGYKEVNLRALQVLVPGGILV 329

Query: 320 YISC 323
             SC
Sbjct: 330 TASC 333


>gi|15607037|ref|NP_214419.1| hypothetical protein aq_2071 [Aquifex aeolicus VF5]
 gi|2984295|gb|AAC07819.1| hypothetical protein aq_2071 [Aquifex aeolicus VF5]
          Length = 391

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 113/329 (34%), Gaps = 57/329 (17%)

Query: 13  QLAEK---VDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQT 67
           Q+  K    DR+R          +  F  +P     + E  +  D  G  L +   + + 
Sbjct: 3   QVRVKPGVEDRIRGFFPWVYRSEIASFSRKPK----KGEIVVVRDVNGKFLGYGYINPEV 58

Query: 68  KERMRI---DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
              +RI   D   P +  +    I+     R    + +  +++ +        ++  +Y 
Sbjct: 59  NIAIRILSFDKNEPVTPELIRKRIKQAYEYRKRLYINSNAYRLVHSEGDLLPGLIVDVYG 118

Query: 125 RLLDDAWRECAIR---------LRDALHARKYQIQLIGRAN-------KTKICLDRDYVD 168
             L   +    +          L + L  +    ++   A        + ++      V 
Sbjct: 119 SYLAVEFTTYGMNQFREVILDTLVELLRPKGIYEKVNEIAKRVEGLDVEERVIYGE--VP 176

Query: 169 ERLTVAGRTLIYRQ-IENS----FT--QPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           E + +    L Y   I       F   Q NA          +          L+++C  G
Sbjct: 177 EEVIIWEHDLKYYINIPQGQKTGFFLDQRNA-------RKFVRNLVEPGDRCLDVFCHTG 229

Query: 222 NFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
            F+L + R     V+ V+I++ +++ A  N   N   ++K V+ ++            F+
Sbjct: 230 GFALNMKRAGAGEVIGVDISELALKEAEKNARLNGFTDIKWVKANA------------FD 277

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            L+++D    +F  I +DPP    + A V
Sbjct: 278 YLRELDKKGEKFDVIIIDPPSFAKNRAAV 306


>gi|116621453|ref|YP_823609.1| SAM-dependent methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224615|gb|ABJ83324.1| SAM-dependent methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 387

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            AA     G  L+ +   G F+L LA   + V AV+ + P++EAAR N  AN ++N+   
Sbjct: 208 AAAQYARGGRALDCFTSTGGFALHLAPKCEHVEAVDSSGPALEAARANSTANGIDNIDWN 267

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHIL 319
                +        R    +  +D  ++      +DP  S   +     + ++Q    ++
Sbjct: 268 EADVFDLLSGYANARRQFSMVVLDPPAFAKNKRSLDPAISAYKEINLRAMRLLQPGGILV 327

Query: 320 YISC 323
             SC
Sbjct: 328 TCSC 331


>gi|109898877|ref|YP_662132.1| HemK family modification methylase [Pseudoalteromonas atlantica
           T6c]
 gi|109701158|gb|ABG41078.1| [protein release factor]-glutamine N5-methyltransferase
           [Pseudoalteromonas atlantica T6c]
          Length = 298

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 31/206 (15%)

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
              L ++L     L  ++  A +     + LD    E  +R    L A++     I    
Sbjct: 29  SAALDSRLLMCHVLQCET--AYLMTWPEKPLD----ELQLRTYQQLVAKRKTGYPIAY-- 80

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
              +   RD+   RL V+  TLI R                ++E VL         +L+L
Sbjct: 81  ---LLGYRDFWSLRLRVSPATLIPRPE-----------TELLVETVLNLPIAEDAHVLDL 126

Query: 217 YCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
             G G  +L LA  +   +VL ++ +  +V  A+ N   N +  V+ ++           
Sbjct: 127 GTGTGAIALALASEKPNWQVLGIDKSADAVALAKQNAELNSLPQVRFMQSD-------WF 179

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPP 300
              E  +L   +     F  I  +PP
Sbjct: 180 SALEQTQLDQQNNQHNVFSLIVSNPP 205


>gi|313680356|ref|YP_004058095.1| sam-dependent methyltransferase [Oceanithermus profundus DSM 14977]
 gi|313153071|gb|ADR36922.1| SAM-dependent methyltransferase [Oceanithermus profundus DSM 14977]
          Length = 393

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 12/97 (12%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
              L+++   G F+L +ARH   V AV+ +  ++EAAR N A N + N++    ++    
Sbjct: 221 ARALDVFAYQGLFALHMARHVAEVEAVDSSAAALEAARENAALNGLENLRFTEANA---- 276

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                   F+ L++      R+  + +DPP      A
Sbjct: 277 --------FDLLRERQRAGERYDVVVLDPPAFAARKA 305


>gi|291295341|ref|YP_003506739.1| SAM-dependent methyltransferase [Meiothermus ruber DSM 1279]
 gi|290470300|gb|ADD27719.1| SAM-dependent methyltransferase [Meiothermus ruber DSM 1279]
          Length = 384

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+++  +G+F+L LA++F +V AV+ +  +++ AR N  AN + N+     ++ EF    
Sbjct: 216 LDVFSYHGSFALHLAQNFKQVTAVDSSAAALQRARENAQANGLANIAFREANAFEF---- 271

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                   L++ +    R+  I +DPP        + 
Sbjct: 272 --------LREEERRKARYDLIVLDPPAFAKGKRDLD 300


>gi|293391857|ref|ZP_06636191.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952391|gb|EFE02510.1| 23S rRNA methyluridine methyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 53

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
           ILY SCN +++ +DL  L+  +  +++ LFD  P+T H E  VLL 
Sbjct: 6   ILYSSCNAETMGKDLQSLTH-YQSKKIQLFDMIPHTAHYEVLVLLK 50


>gi|325295579|ref|YP_004282093.1| hypothetical protein Dester_1403 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066027|gb|ADY74034.1| protein of unknown function Met10 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 399

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 211 GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
             +L+ +C  G F +  A       V+AV+ ++ +++ A+ N   N V +  + V+  + 
Sbjct: 221 DRVLDAFCHLGGFGIHAAVIGKAKEVVAVDSSQLALDLAKENAKLNGVADKFQFVKGDAF 280

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT---VGMVQAYPHILYISC 323
           +  + M++E E      ID  ++      V+  + G  +     + M++   +I+  SC
Sbjct: 281 KVLKRMQQEGEKFDSIVIDPPAFAKSKTVVEQAKRGYKELFLRGLKMLKPGGNIVVCSC 339


>gi|290559902|gb|EFD93224.1| protein of unknown function Met10 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 258

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  +L+++CG G F++ +A+    V A++I K ++   + NI  N + N++     SK+ 
Sbjct: 109 EEKVLDMFCGVGPFAIPIAKKCTEVNAIDINKIAINLLKKNIELNKIKNIRYYCGDSKKI 168

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            + +  E+    + +  +++Y+F  I V  
Sbjct: 169 IKGLD-EKFDRIIMNFPLYAYKFLDIAVKK 197


>gi|325681112|ref|ZP_08160642.1| putative 23S rRNA m5C1962 methyltransferase [Ruminococcus albus 8]
 gi|324107034|gb|EGC01320.1| putative 23S rRNA m5C1962 methyltransferase [Ruminococcus albus 8]
          Length = 409

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 19/220 (8%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT-----VAGRTLI 179
           RLL +      + LR  +      I+ +    + K     D++          +    +I
Sbjct: 146 RLLTEELAADGVTLRGIMERNDVAIRELEGLEQGKGWYKADFLPAETPSPVTEICENGVI 205

Query: 180 YRQ-IENS----FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDR 233
           Y+  +EN     F              + AA       +L+ +   G+F+L  A    + 
Sbjct: 206 YKVDVENGQKTGFF------LDQKYNRLAAAKIAKGKRVLDCFTHTGSFALNAAMGGAEH 259

Query: 234 VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           V AV++++ +V+ A+ N   N +++ +  V     +    +  E+       +D  ++  
Sbjct: 260 VTAVDVSQFAVDTAKANAERNGLSDKMDFVCADVFDLLPKLAEEKAGYDFVILDPPAFTK 319

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYIS-CNPDSLCRD 331
               V+    G  +     ++  P   Y++ C+     R+
Sbjct: 320 SRKTVNSAERGYKEINYRAMKLLPRGGYLATCSCSHFMRN 359


>gi|145355780|ref|XP_001422128.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582368|gb|ABP00445.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 493

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 13/131 (9%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VK 260
           +         +L++ C  G F+L  A      V+AV+ ++ +++ A+ N   N + + V 
Sbjct: 309 VMREIARGKRVLDVCCYTGGFALNAALGGASDVVAVDSSESALDMAKKNAELNGLQDKVN 368

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR--------SGLDDATVGMV 312
            VR  + +F QA   E +  R    D+            P          GL+   + ++
Sbjct: 369 FVRADAFDFMQA---EIDAGRAGSYDVVVLDPPKFAPTKPALKKAIPKYVGLNKRAMTLL 425

Query: 313 QAYPHILYISC 323
           +    ++  SC
Sbjct: 426 RPGGILITCSC 436


>gi|138894205|ref|YP_001124658.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265718|gb|ABO65913.1| Predicted SAM-dependent methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 399

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 14/119 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            L    G +  +L+ +   G+F L         V AV+I++ ++E A+ N A N   NV 
Sbjct: 215 ALRPLIGPETTVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAALNGFTNVD 274

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            V  ++            F+ L++      ++  + +DPP       A    ++ Y  I
Sbjct: 275 FVVANA------------FDYLRESVRAGKQWDVVIIDPPAFAKSAHAVPKALRGYKDI 321


>gi|196250695|ref|ZP_03149383.1| protein of unknown function Met10 [Geobacillus sp. G11MC16]
 gi|196209774|gb|EDY04545.1| protein of unknown function Met10 [Geobacillus sp. G11MC16]
          Length = 394

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 14/119 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            L    G +  +L+ +   G+F L         V AV+I++ ++E A+ N A N   NV 
Sbjct: 210 ALRPLIGPETTVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAALNGFTNVD 269

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            V  ++            F+ L++      ++  + +DPP       A    ++ Y  I
Sbjct: 270 FVVANA------------FDYLRESVRAGKQWDVVIIDPPAFAKSAHAVPKALRGYKDI 316


>gi|126666733|ref|ZP_01737710.1| hypothetical protein MELB17_19806 [Marinobacter sp. ELB17]
 gi|126628778|gb|EAZ99398.1| hypothetical protein MELB17_19806 [Marinobacter sp. ELB17]
          Length = 398

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 85/257 (33%), Gaps = 42/257 (16%)

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS---- 112
           D  H M  Q+  +RM I              +E+   +  +P  R      D L+     
Sbjct: 73  DPTHGMTPQRLTQRMEI-------------ALELRQRLFNKPFYRWVFGDSDGLSGLVID 119

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD---- 168
           +    +V  I      +  ++  +R    L  +   I L       K+    +YV+    
Sbjct: 120 RFGDTVVVQI-SSAGMEQMKDAIVRAIQRL-TQASSIVLKNDGKMRKVEGLENYVEQAHG 177

Query: 169 ---ERLTVAGRTLIYRQI-ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
              E L +    + +         Q       H +             +L+++   G + 
Sbjct: 178 SAPEMLQLEENGVKFEVPLAGG--QKTGWFYDHRMNRARLQAYAPGKRVLDVFSYVGGWG 235

Query: 225 LVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +  A      V  ++ +  ++E+  +N   N + NV  +   + +  +A+  E++     
Sbjct: 236 IQAASAGATSVTCIDSSASAIESVHHNARLNGLTNVDTIEGDAFDALKALADEKQ----- 290

Query: 284 DIDIHSYRFKTIFVDPP 300
                  +F  + +DPP
Sbjct: 291 -------KFDIVVLDPP 300


>gi|46199218|ref|YP_004885.1| hypothetical protein TTC0914 [Thermus thermophilus HB27]
 gi|46196843|gb|AAS81258.1| conserved hypothetical protein [Thermus thermophilus HB27]
          Length = 382

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+++   G F+L LA  F  V+AV+ +  ++  A  N   N + NV+++  ++ +  +
Sbjct: 212 RALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR 271

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            + +E E            RF  + +DPP        V 
Sbjct: 272 RLEKEGE------------RFDLVVLDPPAFAKGKKDVE 298


>gi|148688456|gb|EDL20403.1| RIKEN cDNA 4732479N06, isoform CRA_a [Mus musculus]
          Length = 349

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 84/270 (31%), Gaps = 61/270 (22%)

Query: 9   QYEQQLAEKVDRLRQMMLAFQ-----------------------VPNLQIFRSEPIHYRM 45
            YE QL  K +  ++++ + +                       + +  I       YR 
Sbjct: 84  SYEAQLKVKFEAQKKLLQSLESHLKVLHGVSDTVAAHQSEGLRCLLHPIIPSPTTTGYRN 143

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLL 100
           ++ F ++   D       Y++   +           +P + L N            E  L
Sbjct: 144 KSTFSVYRSPDGNPKTVGYYLGTWKDGN-----VVCLPCNHLKNIPEKHSQVAQYYEVFL 198

Query: 101 R-------------AKLFQIDYLTSQSDQ--AIVTLIYHRLLDDAWRECAIRLRDA---- 141
           R                 ++   T++     AIVT     L ++      + L+D     
Sbjct: 199 RQSSVEPCLLFHEGGHWRELVVRTNRQGHTMAIVTFHPQGLSEEEVCVQKVTLKDFFTKG 258

Query: 142 ------LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
                 L +  +Q   + R +  +      + +  +      L  R   ++F Q N    
Sbjct: 259 PGAICELTSLYFQESTMTRCSHQQSPYQLLFGEPHIFEDLLGLKIRISPDAFFQINTAGA 318

Query: 196 VHMLEWVLAATKGIQGD--LLELYCGNGNF 223
             ML  ++    G+  +  LL++ CG G +
Sbjct: 319 E-MLYRIIGELSGVNSESLLLDICCGTGKW 347


>gi|55981249|ref|YP_144546.1| hypothetical protein TTHA1280 [Thermus thermophilus HB8]
 gi|82408293|pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
           Putative Sam-Dependent Rna Methyltransferase, In Complex
           With S-Adenosyl-L-Homocysteine
 gi|82408294|pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
           Putative Sam-Dependent Rna Methyltransferase, In Complex
           With S-Adenosyl-L-Homocysteine
 gi|55772662|dbj|BAD71103.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 382

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+++   G F+L LA  F  V+AV+ +  ++  A  N   N + NV+++  ++ +  +
Sbjct: 212 RALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR 271

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            + +E E            RF  + +DPP        V 
Sbjct: 272 RLEKEGE------------RFDLVVLDPPAFAKGKKDVE 298


>gi|73535497|pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535498|pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535499|pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535500|pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535501|pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535502|pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535503|pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
 gi|73535504|pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
           Methyltransferase From Thermus Thermophillus Hb8
          Length = 382

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+++   G F+L LA  F  V+AV+ +  ++  A  N   N + NV+++  ++ +  +
Sbjct: 212 RALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR 271

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            + +E E            RF  + +DPP        V 
Sbjct: 272 RLEKEGE------------RFDLVVLDPPAFAKGKKDVE 298


>gi|328473484|gb|EGF44332.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Vibrio parahaemolyticus 10329]
          Length = 285

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 38/184 (20%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +     + L+   +       DAL AR+   + +       I  +R++    L V+  TL
Sbjct: 45  LLTWPEKALEPEQQAQF----DALLARRLAGEPVAY-----IIGEREFWSLPLKVSPTTL 95

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLA 236
           I R                ++E  L  T G  G +L+L  G G  +L LA      +V+ 
Sbjct: 96  IPRPD-----------TERLVEVALDKTYGQTGSILDLGTGTGAIALALASELPSRQVMG 144

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           V++ + + E A YN A  ++ NV   + S                  +      +F  I 
Sbjct: 145 VDLKQEAKELAEYNAAQLNIKNVTFDQGS----------------WFEPIAEGTKFALIV 188

Query: 297 VDPP 300
            +PP
Sbjct: 189 SNPP 192


>gi|206890120|ref|YP_002248963.1| methyltransferase small domain family [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742058|gb|ACI21115.1| methyltransferase small domain family [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 386

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 28/130 (21%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
            G+ L+L+C  G +S+ LA+    +  ++ ++ ++E A+ N   N+V +  + ++     
Sbjct: 213 SGEGLDLFCYVGAWSIHLAKRGANITGIDSSEKAIEIAKQNAMLNNVQDKCRFIKADV-- 270

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---------------TVGMVQ 313
                     F+ L+       ++  I VDPP                       + +++
Sbjct: 271 ----------FDYLRWEAKKGKKYDFIVVDPPAFVKSRQEKKDAIEGYVNLNRMALKLLR 320

Query: 314 AYPHILYISC 323
               +   SC
Sbjct: 321 KNGILATSSC 330


>gi|297560902|ref|YP_003679876.1| methyltransferase small [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845350|gb|ADH67370.1| methyltransferase small [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 223

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +LE V        G LL+L CG G  +L +A      RVL V++   +V  AR N A
Sbjct: 46  TRVLLESV--PPPPEGGRLLDLGCGYGPIALTMASRAPGARVLGVDVNARAVGLARRNAA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR----FKTIFVDPPRSGLDDAT 308
            + ++N +   +  +      R           D+ +      F  ++ +PP        
Sbjct: 104 EHGLDNARFAVVEPEGGLSVERGASGEGAPARDDVTAQDLLGPFDAVWSNPPIRVGKGVL 163

Query: 309 VGMVQAY 315
             M++ +
Sbjct: 164 HSMLRTW 170


>gi|149192360|ref|ZP_01870563.1| HemK protein [Vibrio shilonii AK1]
 gi|148833799|gb|EDL50833.1| HemK protein [Vibrio shilonii AK1]
          Length = 284

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 29/172 (16%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W E A+   +A        + I       I  +R++    L VA  TLI R         
Sbjct: 48  WPEKALTSNEAEQFEALLNRRIAGEPVAYILGEREFWSLPLNVAPSTLIPRPD------- 100

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAAR 248
                  ++E  L       GD+L+L  G G  +L LA       V+ V+    +VE AR
Sbjct: 101 ----TERLVELALDKALVNDGDILDLGTGTGAIALALASELKTRSVMGVDFQTEAVELAR 156

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N    ++ N +  + S                  +     ++F  I  +PP
Sbjct: 157 SNATKLNITNCQFAQGS----------------WFEPVDLVHKFSVIVSNPP 192


>gi|85814038|emb|CAF31454.1| putative gentamicin methyltransferase [Micromonospora echinospora]
          Length = 321

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 25/133 (18%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
              L++ CG+G  SLVLA  ++ VL V++   +V  +R N A N + NV        E  
Sbjct: 125 ARALDMGCGSGVLSLVLADRYESVLGVDVNPRAVALSRLNAALNGLTNVTFREGDMFE-- 182

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCR 330
                               RF  I  + P +   +  V +++A   IL      ++  R
Sbjct: 183 ----------------PAEGRFSRIVFNSPTNEEGNEFVDLLEAGEPIL------ETFFR 220

Query: 331 DL-SILSTTHTIE 342
           ++   L +   +E
Sbjct: 221 NVPRKLESGGIVE 233


>gi|14521889|ref|NP_127366.1| hypothetical protein PAB1237 [Pyrococcus abyssi GE5]
 gi|5459109|emb|CAB50595.1| Hypothetical protein, Met-10+ like protein [Pyrococcus abyssi GE5]
          Length = 396

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-V 259
            L         +L+++   G F++  A    D V+A++ +  ++E A+ N   N V + +
Sbjct: 210 ALEKWINPGDRVLDVFTYTGGFAIHAAIAGADEVIAIDKSPRAIETAKENAKLNGVEDKI 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           K +  S+            F  ++ +     +F  + +DPP     +  + 
Sbjct: 270 KFIVGSA------------FEEMEKLQKKGEKFDVVILDPPAFVQHEKDLK 308


>gi|254496812|ref|ZP_05109663.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254353939|gb|EET12623.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 390

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 17/98 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +L+LY   G F+L  A+     V AV+ +  ++   R N   N++ N++ + 
Sbjct: 216 AQLAKGKRVLDLYSYTGGFALHAAKAGATSVTAVDSSAQAIAQGRKNAELNNLTNIEFIE 275

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             ++++                   +  +  + +DPP+
Sbjct: 276 ADARDYL----------------AQAGNYDVVTLDPPK 297


>gi|304373299|ref|YP_003856508.1| RNA methyltransferase, TrmA family protein [Mycoplasma hyorhinis
           HUB-1]
 gi|304309490|gb|ADM21970.1| RNA methyltransferase, TrmA family protein [Mycoplasma hyorhinis
           HUB-1]
          Length = 64

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 305 DDATVGMVQAYP-HILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
             A   +++  P  I+Y+SCNP +   D S+L   + I    + + F  T H+E  + L 
Sbjct: 3   KAAIKEILRLNPKRIIYLSCNPATQAYDFSLLKHKYKIIFFEIHNMFVKTFHIENLICLE 62

Query: 364 RK 365
           RK
Sbjct: 63  RK 64


>gi|146296788|ref|YP_001180559.1| protein of unknown function Met10 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410364|gb|ABP67368.1| SAM-dependent methyltransferase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 389

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 14/112 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            V          +L+ +C  G F++  A+    +V+ V+I+  ++E A  N   N+V N 
Sbjct: 206 RVAIRNFVSDKTVLDCFCHTGGFTVNAAKFGASKVIGVDISDTAIEQAMKNAKLNNVENK 265

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            + V  +             F+ L ++D    ++  + +DPP       T+ 
Sbjct: 266 CEFVVSNV------------FDYLNELDDKKEKYDVVILDPPAFAKSVHTIE 305


>gi|254515299|ref|ZP_05127360.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [gamma proteobacterium NOR5-3]
 gi|219677542|gb|EED33907.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [gamma proteobacterium NOR5-3]
          Length = 278

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 82/221 (37%), Gaps = 39/221 (17%)

Query: 100 LRAKLFQIDYLTS----QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
           +R  L +   L      +  + ++    ++            + +A+ AR+Y+  L  RA
Sbjct: 4   VRDLLAEGSMLAGDEARREAEVLLCAALNKPRSYFMAWPEADVAEAI-ARRYRQWLQQRA 62

Query: 156 NKTKICL---DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
               +      RD+    LTV   TLI R                ++E  LA        
Sbjct: 63  EGVPVAYLLGTRDFWTLSLTVNEATLIPRPD-----------TELLVEQALALELPESAT 111

Query: 213 LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L+L  G+G  +L LA  R   RVL VE +  ++  A  N     +++V+   +SS  F+
Sbjct: 112 VLDLGTGSGAIALALATERPQWRVLGVERSPEALAVAIDNARQLGLDSVQW--LSSDWFS 169

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           Q +                 RF  I  +PP     DA +  
Sbjct: 170 QVV----------------GRFDLIVSNPPYIADQDAHLAT 194


>gi|323455833|gb|EGB11701.1| hypothetical protein AURANDRAFT_2373 [Aureococcus anophagefferens]
          Length = 394

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 16/98 (16%)

Query: 213 LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+LYC +G F+L  A+H       V+ +  +V+ AR N AAN ++           + +
Sbjct: 227 VLDLYCYSGGFALNAAKHGATEARGVDSSATAVDLARRNAAANGLDACAFEEADVSAWLK 286

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           A                  R+  +  DPP+      T+
Sbjct: 287 A---------------SDARYDVVVCDPPKLAPSAKTL 309


>gi|258621066|ref|ZP_05716100.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258586454|gb|EEW11169.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 286

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I+G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALEKAALIEGELLDLGTG 123

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      RV  +++   +VE A+ N     + N + ++ S            
Sbjct: 124 TGAIALALASELPLRRVTGIDLRPEAVELAQENATRLSILNTQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|311693351|gb|ADP96224.1| SAM-dependent methyltransferase [marine bacterium HP15]
          Length = 401

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 84/254 (33%), Gaps = 18/254 (7%)

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI---VTLIYHRLLDDAWRECAIRLRDA 141
              + +   +  +P  R      D L+          V +       +A +E  +R    
Sbjct: 91  EAALALRERLFDKPFYRWVFGDSDGLSGLVIDRFDSTVVVQISTAGMEAMKEAVVRAVQR 150

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDE-------RLTVAGRTLIYRQI-ENSFTQPNAG 193
           L      I L       K+     YV++        L V    + +    E    Q    
Sbjct: 151 L-VHPEAIILKNDGKMRKVEGLDTYVEQAHGAAVSLLEVEENGVRFEVPLEGG--QKTGW 207

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
              H +             +L+++   G + +  A     +V  V+ +  ++++  +N  
Sbjct: 208 FYDHRMNRARLQAYAPGKRVLDVFSYVGGWGIQAACAGATQVTCVDSSAGAIDSVHHNAR 267

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNR---LKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            N ++NV+ +   + E  +A+  E+E      L    +   R      +   + L+   +
Sbjct: 268 LNGLDNVETIEGDAFEALKALADEKEKFDVVVLDPPALIPRRRDQKAGEEAYARLNQLGL 327

Query: 310 GMVQAYPHILYISC 323
            +++    ++  SC
Sbjct: 328 RLLERDGILVSASC 341


>gi|319789216|ref|YP_004150849.1| protein of unknown function Met10 [Thermovibrio ammonificans HB-1]
 gi|317113718|gb|ADU96208.1| protein of unknown function Met10 [Thermovibrio ammonificans HB-1]
          Length = 399

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 30/131 (22%)

Query: 211 GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
             +L+ +C  G F +  A       V+AV+ ++ +++ AR N A N V      V+  + 
Sbjct: 221 DRVLDAFCHLGGFGIHAAVIGKAGEVVAVDSSQLALDLARENAALNGVEEKFTFVKGDA- 279

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG---------------MV 312
                      F  LK++ +   +F +I +DPP        +                M+
Sbjct: 280 -----------FKVLKEMSLWGEKFDSIVIDPPAFAKSKKVLEQAKKGYKELFLRGLKML 328

Query: 313 QAYPHILYISC 323
           +   +I+  SC
Sbjct: 329 KPGGNIVVCSC 339


>gi|312112164|ref|YP_003990480.1| methyltransferase small [Geobacillus sp. Y4.1MC1]
 gi|311217265|gb|ADP75869.1| methyltransferase small [Geobacillus sp. Y4.1MC1]
          Length = 394

 Score = 64.6 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 14/119 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +         +L+ +   G+F L         V AV+I++ ++E A+ N A N   NV 
Sbjct: 210 AIKPLINSDTTVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAALNGFTNVD 269

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            V  ++            F+ L++      ++  + +DPP       A    ++ Y  I
Sbjct: 270 FVVANA------------FDYLREAVRDGKKWDVVIIDPPAFAKSAQAVPKALRGYKDI 316


>gi|295401060|ref|ZP_06811034.1| methyltransferase small [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976853|gb|EFG52457.1| methyltransferase small [Geobacillus thermoglucosidasius C56-YS93]
          Length = 394

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 14/119 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +         +L+ +   G+F L         V AV+I++ ++E A+ N A N   NV 
Sbjct: 210 AIKPLINSDTTVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAALNGFTNVD 269

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            V  ++            F+ L++      ++  + +DPP       A    ++ Y  I
Sbjct: 270 FVVANA------------FDYLREAVRDGKKWDVVIIDPPAFAKSAQAVPKALRGYKDI 316


>gi|239826143|ref|YP_002948767.1| hypothetical protein GWCH70_0604 [Geobacillus sp. WCH70]
 gi|239806436|gb|ACS23501.1| protein of unknown function Met10 [Geobacillus sp. WCH70]
          Length = 394

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 14/119 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +         +L+ +   G+F L         V AV+I++ ++E A+ N A N   NV 
Sbjct: 210 AIKPLINSDTTVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAALNGFTNVD 269

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            V  ++            F+ L++      ++  + +DPP       A    ++ Y  I
Sbjct: 270 FVVANA------------FDYLREAVRDGKKWDVVIIDPPAFAKSAQAVPKALRGYKDI 316


>gi|28897518|ref|NP_797123.1| HemK protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364111|ref|ZP_05776831.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio parahaemolyticus K5030]
 gi|260879266|ref|ZP_05891621.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio parahaemolyticus AN-5034]
 gi|260897558|ref|ZP_05906054.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio parahaemolyticus Peru-466]
 gi|260903528|ref|ZP_05911923.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio parahaemolyticus AQ4037]
 gi|28805730|dbj|BAC59007.1| HemK protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086348|gb|EFO36043.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio parahaemolyticus Peru-466]
 gi|308089666|gb|EFO39361.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio parahaemolyticus AN-5034]
 gi|308110852|gb|EFO48392.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio parahaemolyticus AQ4037]
 gi|308114222|gb|EFO51762.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio parahaemolyticus K5030]
          Length = 285

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 38/184 (20%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +     + L+   +       +AL AR+   + +       I  +R++    L V+  TL
Sbjct: 45  LLTWPEKALEPEQQAQF----NALLARRLAGEPVAY-----IIGEREFWSLPLKVSPTTL 95

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLA 236
           I R                ++E  L  T G  G +L+L  G G  +L LA      +V+ 
Sbjct: 96  IPRPD-----------TERLVEVALDKTYGQTGSILDLGTGTGAIALALASELPNRQVMG 144

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           V++ + + E A YN A  ++ NV   + S                  +      +F  I 
Sbjct: 145 VDLKQEAKELAEYNAAQLNIKNVTFDQGS----------------WFEPIAEGTKFALIV 188

Query: 297 VDPP 300
            +PP
Sbjct: 189 SNPP 192


>gi|148981992|ref|ZP_01816580.1| HemK protein [Vibrionales bacterium SWAT-3]
 gi|145960680|gb|EDK26024.1| HemK protein [Vibrionales bacterium SWAT-3]
          Length = 290

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 64/198 (32%), Gaps = 39/198 (19%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L  T G QG +L+L  G
Sbjct: 77  IVGEREFWSLPLKVSPSTLIPRPD-----------TERLVEVALDKTYGKQGAILDLGTG 125

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA       V  +++   +   A  N    ++ N   +  S  +    +    
Sbjct: 126 TGAIALALASEMPNRPVTGIDLRPEAQALATENAKRLNITNATFLHGSWFDPLSGLAS-- 183

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDD--------------ATVGMVQAYPHILYISC 323
                   D    +F  I  +PP    DD              A V   +    I YIS 
Sbjct: 184 --------DGDEVKFSLIVSNPPYIEKDDPHLSQGDVRFEPITALVAEEKGLADIRYISE 235

Query: 324 NPDSLCRDLSIL--STTH 339
           N      D   L     +
Sbjct: 236 NARGFLEDEGWLAFEHGY 253


>gi|289192387|ref|YP_003458328.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
 gi|288938837|gb|ADC69592.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
          Length = 389

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 27/136 (19%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           +         +L++ C  G FS+  A     V+ V+++K ++E A  N+  N++  +  +
Sbjct: 209 IERFVKEGDKVLDICCYTGGFSVHCAIKGAEVVGVDLSKKALETAEENMKLNNIPKDKYE 268

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-------------RSGLDDA 307
            +  ++ E  + M  + E            +F  + +DPP             R+     
Sbjct: 269 FIEGNAFEVMKEMIEDGE------------KFDVVILDPPAFTQTEEDVKNALRAYASLN 316

Query: 308 TVGMVQAYPHILYISC 323
            +G+  A    +  SC
Sbjct: 317 YLGIKLAKRIFVTCSC 332


>gi|14591657|ref|NP_143744.1| hypothetical protein PH1915 [Pyrococcus horikoshii OT3]
 gi|3258357|dbj|BAA31040.1| 396aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 396

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
            L         +L+++   G F++  A    D V+ ++ +  ++E A+ N   N V + +
Sbjct: 210 ALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRM 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           K +  S+            F  ++ +     +F  + +DPP     +  +  
Sbjct: 270 KFIVGSA------------FEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKA 309


>gi|86148711|ref|ZP_01066988.1| HemK protein [Vibrio sp. MED222]
 gi|85833504|gb|EAQ51685.1| HemK protein [Vibrio sp. MED222]
          Length = 290

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 91/275 (33%), Gaps = 47/275 (17%)

Query: 90  MMATIRLEPLLRAKLFQI--DYLTSQSDQAIVTLIYHRLLDDA-----WRECAIRLRDAL 142
           M +   +E  L++ + Q+     TS S  A V L+ H L         W E  +      
Sbjct: 1   MQSAYTVESALKSAIVQLQEGDNTSPSIDAAV-LLCHALDKPRSYLLTWPEKHLTSEQES 59

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                  + +       I  +R++    L V+  TLI R                ++E  
Sbjct: 60  EFHTLLKRRLTGEPVAYIVGEREFWSLPLKVSPSTLIPRPD-----------TERLVEVA 108

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVK 260
           L  T G QG +L+L  G G  +L LA       V  +++   + + A  N    ++ N  
Sbjct: 109 LDKTYGKQGAILDLGTGTGAIALALASEMSNRPVTGIDLRPEAQQLATENAQRLNITNAT 168

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--------------RSGLDD 306
            +  S  E   ++  E            + +F  I  +PP              R     
Sbjct: 169 FLHGSWFEPLNSVNSEE----------KAVKFSLIVSNPPYIEKNDPHLSQGDVRFEPIT 218

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDLSIL--STTH 339
           A V   +    I YIS N  S   +   L     +
Sbjct: 219 ALVAEEKGLADIRYISENARSFLENEGWLAFEHGY 253


>gi|290558986|gb|EFD92368.1| methylase [Candidatus Parvarchaeum acidophilus ARMAN-5]
 gi|326422531|gb|EGD71927.1| Methylase [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS']
          Length = 193

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +L A K  +G++L+++ G+G  ++  A+    V AV+I   +++AAR N   N + N+K 
Sbjct: 20  LLRAVKYAKGEVLDMFTGSGIIAINAAKTAHNVTAVDINPFAIDAARKNSKINGIKNIKF 79

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++               F+ L      + +F  I+ +PP
Sbjct: 80  IKSD------------LFSEL-----ENKKFDVIYANPP 101


>gi|18976623|ref|NP_577980.1| hypothetical protein PF0251 [Pyrococcus furiosus DSM 3638]
 gi|18892190|gb|AAL80375.1| hypothetical protein PF0251 [Pyrococcus furiosus DSM 3638]
          Length = 398

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 14/112 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
            L         +L+++   G F++  A    + V+A++ +  ++E A+ N   N V + +
Sbjct: 211 ALEKWVEPGDRVLDVFTYTGGFAIHAAIAGAEEVIAIDKSPRAIETAKENAKLNGVEDRI 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           K +  S+            F  ++ +     +F  + +DPP     +  +  
Sbjct: 271 KFIVGSA------------FEEMEKLQKKGEKFDIVILDPPAFVQHEKDLQA 310


>gi|256425852|ref|YP_003126505.1| RNA methylase [Chitinophaga pinensis DSM 2588]
 gi|256040760|gb|ACU64304.1| putative RNA methylase [Chitinophaga pinensis DSM 2588]
          Length = 390

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 15/111 (13%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
            D+LE +C  G FS          VL ++I++ +V  AR N   N++ +  K   +++ +
Sbjct: 217 ADVLEAFCYTGTFSCHAGHYGAKSVLGLDISEHAVNTARRNAELNNLQDICKFQAVNAFD 276

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
             +   RE +            +F T+ +DPP      +     +  Y  I
Sbjct: 277 VLKQWTREEK------------KFDTVILDPPAFTKSRENIQKAITGYKEI 315


>gi|268567047|ref|XP_002647704.1| Hypothetical protein CBG17893 [Caenorhabditis briggsae]
          Length = 546

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDR-----VLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSS 266
           LL++ CG G     L ++ +       + +E+   +VE A+ N   N +    K +   +
Sbjct: 442 LLDICCGTGTIGQCLLKNIENTQKVFCVGIEMITEAVEDAKQNAKQNKMEKCCKYIAGKA 501

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           ++  ++M+ +         D+ + R   +  DPPR+G+ +  +   +
Sbjct: 502 EDTFRSMKYQLPAG----FDLRTSRVVGVL-DPPRAGMHEKVILACR 543



 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 81/276 (29%), Gaps = 68/276 (24%)

Query: 5   LLIDQYEQQLAEKVD-------RLRQMMLAFQVPNL-----------QIFRSE-PIHYRM 45
           L   +YE+QL  K         +L + +   +V  +           QI  S     YR 
Sbjct: 119 LAEMEYEKQLELKQQNSVKVMNKLHEQLQRNKVEKIGKQTEFRKRLQQILPSPKTTGYRN 178

Query: 46  RAEFHIWHDGD-----DLYHIMFDQQTKERMR---IDYFMPGSLLI---NALMIEMMATI 94
           + EF I HD +           F +     +    +D   P  + I       ++     
Sbjct: 179 KCEFTIGHDLNTDICIGFVGGRFAENRHFVIPPLNVDIVSPQMMSIVGDAHEFVKETELA 238

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVT-----LIYHRLLDDAWRECAIRLRDA--LHARKY 147
             +   R   +++  +       ++      L      ++  ++ A R  D     ++KY
Sbjct: 239 PFDEFERKGFWRLLTVREFGGDVMLIFTVFPLDSAEKTEEVQKKIAKRFMDFETFTSKKY 298

Query: 148 QIQLIGRANKT--------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
           ++  I              K+     Y+ E L        +R    +F Q N+     + 
Sbjct: 299 RVCSIYWQEMVHISDTPNFKLIAGTPYIYESLL----DCRFRVSPPAFFQTNSQGASVLY 354

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
             +               CG       LA     V+
Sbjct: 355 STIGEL------------CG-------LAEKVSEVV 371


>gi|84394466|ref|ZP_00993180.1| HemK protein [Vibrio splendidus 12B01]
 gi|84374907|gb|EAP91840.1| HemK protein [Vibrio splendidus 12B01]
          Length = 290

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 89/266 (33%), Gaps = 49/266 (18%)

Query: 90  MMATIRLEPLLRAKLFQI--DYLTSQSDQAIVTLIYHRLLDDA-----WRECAIRLRDAL 142
           M +   +E  L++ + Q+     TS S  A V L+ H L         W E  +      
Sbjct: 1   MQSAYTVESALKSAIVQLQEGDNTSPSIDAAV-LLCHALDKPRSYLLTWPEKHLTSEQES 59

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                  + +       I  +R++    L V+  TLI R                ++E  
Sbjct: 60  EFHTLLKRRLTGEPVAYIVGEREFWSLPLKVSPSTLIPRPD-----------TERLVEVA 108

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L  T G QG +L+L  G G  +L LA       V  +++   + + A  N    ++ N  
Sbjct: 109 LDKTYGKQGAILDLGTGTGAIALALASEMPNRPVTGIDLRPEAQQLATENAQRLNITNAT 168

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--------------RSGLDD 306
            +  S  E   +   E E          + +F  I  +PP              R     
Sbjct: 169 FLHGSWFEPLNSASSEEE----------AVKFSLIVSNPPYIEKNDPHLSQGDVRFEPIT 218

Query: 307 ATVGMVQAYPHILYISCNPDSLCRDL 332
           A V   +    I YIS N     RD 
Sbjct: 219 ALVAEEKGLADIRYISEN----ARDF 240


>gi|83314739|ref|XP_730491.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23490229|gb|EAA22056.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 115

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 314 AYPH-ILYISCNPDSLCRDLSIL-STTHTIERLALFDQFPYTRHMECGVLLV 363
             P  I+YISCN +S  RD++ L S  + ++ +   D FP T+H E   LL 
Sbjct: 37  LCPRFIIYISCNVNSQLRDINHLISLGYILKEIIPIDTFPRTQHFELIALLE 88


>gi|303244524|ref|ZP_07330858.1| protein of unknown function Met10 [Methanothermococcus okinawensis
           IH1]
 gi|302485072|gb|EFL48002.1| protein of unknown function Met10 [Methanothermococcus okinawensis
           IH1]
          Length = 381

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L         +L++ C  G FS+        V+ V+++  +++ A  N+  N++ +   +
Sbjct: 201 LENYIKKGDKVLDICCYTGGFSVHCGIKGAEVIGVDMSNEALKVAEENMTLNNIKHYNFI 260

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHILYI 321
             ++ +  + M  + E            +F  + +DPP            ++AY  + Y+
Sbjct: 261 EGNAFDIMRDMINKNE------------KFDVVILDPPAFTKSSKDVKNALKAYNTLNYL 308


>gi|121727186|ref|ZP_01680353.1| hemK protein [Vibrio cholerae V52]
 gi|147674049|ref|YP_001217694.1| hemK protein [Vibrio cholerae O395]
 gi|262167527|ref|ZP_06035233.1| Polypeptide chain release factor methylase [Vibrio cholerae RC27]
 gi|121630431|gb|EAX62824.1| hemK protein [Vibrio cholerae V52]
 gi|146315932|gb|ABQ20471.1| hemK protein [Vibrio cholerae O395]
 gi|227014074|gb|ACP10284.1| hemK protein [Vibrio cholerae O395]
 gi|262024099|gb|EEY42794.1| Polypeptide chain release factor methylase [Vibrio cholerae RC27]
          Length = 286

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N +  + S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFFQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|257439919|ref|ZP_05615674.1| methyltransferase [Faecalibacterium prausnitzii A2-165]
 gi|257197647|gb|EEU95931.1| methyltransferase [Faecalibacterium prausnitzii A2-165]
          Length = 409

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 18/187 (9%)

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
            R  +AL A++   Q  G  +         + D   T      ++  ++    Q      
Sbjct: 166 ERNDEALRAKEGLAQNKGWFD----LPGETHPDSTKTEICENGVFYHVDFENGQKTGFFL 221

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAAN 254
                    A       +L+ +   G+F+L  A+    RV A +I+  ++  A+ N   N
Sbjct: 222 DQKYNRRAVARIAAGHTVLDCFTHTGSFALNAAKGGAARVTAADISAEAIAMAQRNAQRN 281

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQ 313
           ++ N+  +   + E    + +E             + +  I +DPP       TV   ++
Sbjct: 282 NLTNMDFLCEDTFELLPRLEKE------------GHPYDFIILDPPAFTKARRTVENAMR 329

Query: 314 AYPHILY 320
            Y  I Y
Sbjct: 330 GYKEINY 336


>gi|218708756|ref|YP_002416377.1| hypothetical protein VS_0753 [Vibrio splendidus LGP32]
 gi|218321775|emb|CAV17731.1| Protein hemK homolog [Vibrio splendidus LGP32]
          Length = 290

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 89/274 (32%), Gaps = 45/274 (16%)

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA------WRECAIRLRDALH 143
           M +   +E  L++ + Q+    + S     T++    LD        W E  +       
Sbjct: 1   MQSAYTVESALKSAIVQLQEGDNTSPSIDATVLLCHALDKPRSYLLTWPEKHLTSEQESE 60

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
                 + +       I  +R++    L V+  TLI R                ++E  L
Sbjct: 61  FNTLLKRRLTGEPVAYIVGEREFWSLPLKVSPSTLIPRPD-----------TERLVEVAL 109

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             T G QG +L+L  G G  +L LA       V  +++   + + A  N    ++ N   
Sbjct: 110 DKTYGKQGAILDLGTGTGAIALALASEMPNRPVTGIDLRPEAQQLATENAQRLNITNATF 169

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--------------RSGLDDA 307
           +  S  E   ++  E            + +F  I  +PP              R     A
Sbjct: 170 LHGSWFEPLNSVNSEE----------KAVKFSLIVSNPPYIEKNDPHLSQGDVRFEPITA 219

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSIL--STTH 339
            V   +    I YIS N  S   +   L     +
Sbjct: 220 LVAEEKGLADIRYISENARSFLENEGWLAFEHGY 253


>gi|330509051|ref|YP_004385479.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328929859|gb|AEB69661.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 362

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 167 VDERLTVAGRT--LIYRQ-IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
            +ER T   +   L YR  +E ++      +    L   +A+  G    +L+++ G G F
Sbjct: 169 GEERTTTTHKEHGLRYRIDLEGAYF--TPRLGTERLR--IASLVGPTDVVLDMFAGVGPF 224

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           S+++A+    V+A++    +V+  R N   N V N+ I+   + E  
Sbjct: 225 SILMAKRCRWVVAMDKNPVAVQYLRENARLNKVENIDILEGDANEIA 271


>gi|153801641|ref|ZP_01956227.1| hemK protein [Vibrio cholerae MZO-3]
 gi|124122818|gb|EAY41561.1| hemK protein [Vibrio cholerae MZO-3]
          Length = 286

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N +  + S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFFQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|15642177|ref|NP_231809.1| hemK protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121586800|ref|ZP_01676582.1| hemK protein [Vibrio cholerae 2740-80]
 gi|153818816|ref|ZP_01971483.1| hemK protein [Vibrio cholerae NCTC 8457]
 gi|153823574|ref|ZP_01976241.1| hemK protein [Vibrio cholerae B33]
 gi|227082303|ref|YP_002810854.1| hemK protein [Vibrio cholerae M66-2]
 gi|229507744|ref|ZP_04397249.1| methylase of polypeptide chain release factors [Vibrio cholerae BX
           330286]
 gi|229512020|ref|ZP_04401499.1| methylase of polypeptide chain release factors [Vibrio cholerae
           B33]
 gi|229607289|ref|YP_002877937.1| methylase of polypeptide chain release factor [Vibrio cholerae
           MJ-1236]
 gi|254849257|ref|ZP_05238607.1| hemK protein [Vibrio cholerae MO10]
 gi|255745093|ref|ZP_05419042.1| methylase of polypeptide chain release factors [Vibrio cholera CIRS
           101]
 gi|298497807|ref|ZP_07007614.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio cholerae MAK 757]
 gi|18203196|sp|Q9KQ26|HEMK_VIBCH RecName: Full=Protein methyltransferase hemK homolog; AltName:
           Full=M.VchAHemK2P
 gi|9656732|gb|AAF95323.1| hemK protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548967|gb|EAX59006.1| hemK protein [Vibrio cholerae 2740-80]
 gi|126510659|gb|EAZ73253.1| hemK protein [Vibrio cholerae NCTC 8457]
 gi|126518909|gb|EAZ76132.1| hemK protein [Vibrio cholerae B33]
 gi|227010191|gb|ACP06403.1| hemK protein [Vibrio cholerae M66-2]
 gi|229351985|gb|EEO16926.1| methylase of polypeptide chain release factors [Vibrio cholerae
           B33]
 gi|229355249|gb|EEO20170.1| methylase of polypeptide chain release factors [Vibrio cholerae BX
           330286]
 gi|229369944|gb|ACQ60367.1| methylase of polypeptide chain release factor [Vibrio cholerae
           MJ-1236]
 gi|254844962|gb|EET23376.1| hemK protein [Vibrio cholerae MO10]
 gi|255736923|gb|EET92319.1| methylase of polypeptide chain release factors [Vibrio cholera CIRS
           101]
 gi|297542140|gb|EFH78190.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio cholerae MAK 757]
          Length = 286

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N +  + S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFFQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|317132483|ref|YP_004091797.1| methyltransferase small [Ethanoligenens harbinense YUAN-3]
 gi|315470462|gb|ADU27066.1| methyltransferase small [Ethanoligenens harbinense YUAN-3]
          Length = 398

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 14/118 (11%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            A      G +L+ +C  G F+L  AR   D V AV+I+  ++E  R N A N + N+  
Sbjct: 218 AALAPFSSGAVLDCFCHTGGFALHAARYGADTVEAVDISSAALEMVRRNAALNGLANITT 277

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
              +  +  +A ++E              ++  + +DPP      + +    + Y  I
Sbjct: 278 TEANVFDLLKAYQQE------------GRQYDLVILDPPAFAKSKSALQSAARGYKEI 323


>gi|156973550|ref|YP_001444457.1| hypothetical protein VIBHAR_01251 [Vibrio harveyi ATCC BAA-1116]
 gi|156525144|gb|ABU70230.1| hypothetical protein VIBHAR_01251 [Vibrio harveyi ATCC BAA-1116]
          Length = 285

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 29/172 (16%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W E A+            ++ I       I  +R++    L V+  TLI R         
Sbjct: 48  WPEKALEAEQQAQFDDLLVRRIAGEPVAYIIGEREFWSLPLKVSPSTLIPRPD------- 100

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAAR 248
                  ++E  L  T    G +L+L  G G  +L LA      +V+ V++ + + E A 
Sbjct: 101 ----TERLVEVALDKTYEQTGPILDLGTGTGAIALALASEMPKRQVMGVDLKQEAKELAE 156

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           YN +  ++ NV   + S                  +  +   +F  I  +PP
Sbjct: 157 YNASQLNIKNVTFDQGS----------------WFEPIVSGTKFALIVSNPP 192


>gi|229519156|ref|ZP_04408599.1| methylase of polypeptide chain release factors [Vibrio cholerae
           RC9]
 gi|229343845|gb|EEO08820.1| methylase of polypeptide chain release factors [Vibrio cholerae
           RC9]
          Length = 286

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N +  + S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFFQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|77919261|ref|YP_357076.1| putative oxidoreductase [Pelobacter carbinolicus DSM 2380]
 gi|77545344|gb|ABA88906.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380]
          Length = 392

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAAN-HVNNVKIVRMSSKE 268
             +L+L+C +G++++  AR     VL ++I+  +V  A+ N   N      + V+     
Sbjct: 218 KRILDLFCYSGSWAIHAARYGAKEVLGIDISAGAVALAQENARLNFQDATCRFVQADV-- 275

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                     F+RL+++     RF  I +DPP    +  
Sbjct: 276 ----------FDRLRELHSQKERFDGIILDPPAFIKNRK 304


>gi|259908617|ref|YP_002648973.1| Protein methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224964239|emb|CAX55746.1| Protein methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|283478590|emb|CAY74506.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Erwinia pyrifoliae DSM 12163]
          Length = 281

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 30/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           +  +R++    L+V   TLI R   +S           ++E  LA      G +L+L  G
Sbjct: 71  LTGEREFWSLSLSVTPDTLIPR--PDS---------EVLVEQALAHLPVAAGSILDLGTG 119

Query: 220 NGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           +G  +L LA  R   +V+ ++    +V  A++N A   + N   +               
Sbjct: 120 SGAIALALASERPDCQVIGIDRIPAAVALAQHNAARLGLTNATFMPGD------------ 167

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ LK       +F  I  +PP
Sbjct: 168 WFSALK-----QQQFAVIVSNPP 185


>gi|212640143|ref|YP_002316663.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
 gi|212561623|gb|ACJ34678.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
          Length = 397

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +      +  +L+ +   G+F L         V AV+I++ ++E A+ N   N   NV 
Sbjct: 213 AIKPLITSESTVLDCFTHTGSFMLNACLYGAKHVTAVDISEHAIETAKRNAELNGFTNVD 272

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            V  ++            F+ L++      ++  + +DPP       A    +  Y  I
Sbjct: 273 FVVANA------------FDYLRECVQQGKKWDVVIIDPPAFAKSAHAVPKALAGYKDI 319


>gi|310767483|gb|ADP12433.1| Protein methyltransferase [Erwinia sp. Ejp617]
          Length = 281

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 30/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           +  +R++    L+V   TLI R   +S           ++E  LA      G +L+L  G
Sbjct: 71  LTGEREFWSLSLSVTPDTLIPR--PDS---------EVLVEQALAHLPVAAGSILDLGTG 119

Query: 220 NGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           +G  +L LA  R   +V+ ++    +V  A++N A   + N   +               
Sbjct: 120 SGAIALALASERPDCQVIGIDRIPAAVALAQHNAARLGLTNATFMPGD------------ 167

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ LK       +F  I  +PP
Sbjct: 168 WFSALK-----QQQFAVIVSNPP 185


>gi|297531187|ref|YP_003672462.1| hypothetical protein GC56T3_2944 [Geobacillus sp. C56-T3]
 gi|297254439|gb|ADI27885.1| Protein of unknown function methylase putative [Geobacillus sp.
           C56-T3]
          Length = 394

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 14/119 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            L    G +  +L+ +   G+F L           AV+I++ ++E A+ N A N   NV+
Sbjct: 210 ALRPLIGPETTVLDCFTHTGSFMLNACLYGAKHATAVDISEHAIETAKRNAALNGFTNVE 269

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            V  ++            F+ L++      ++  + +DPP       A    ++ Y  I
Sbjct: 270 FVVANA------------FDYLRESVRAGKQWDVVIIDPPAFAKSAHAVPKALRGYKDI 316


>gi|261418850|ref|YP_003252532.1| hypothetical protein GYMC61_1409 [Geobacillus sp. Y412MC61]
 gi|319765667|ref|YP_004131168.1| hypothetical protein GYMC52_0530 [Geobacillus sp. Y412MC52]
 gi|261375307|gb|ACX78050.1| protein of unknown function Met10 [Geobacillus sp. Y412MC61]
 gi|317110533|gb|ADU93025.1| Conserved hypothetical protein CHP00095 [Geobacillus sp. Y412MC52]
          Length = 394

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 14/119 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            L    G +  +L+ +   G+F L           AV+I++ ++E A+ N A N   NV+
Sbjct: 210 ALRPLIGPETTVLDCFTHTGSFMLNACLYGAKHATAVDISEHAIETAKRNAALNGFTNVE 269

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            V  ++            F+ L++      ++  + +DPP       A    ++ Y  I
Sbjct: 270 FVVANA------------FDYLRESVRAGKQWDVVIIDPPAFAKSAHAVPKALRGYKDI 316


>gi|153213281|ref|ZP_01948693.1| hemK protein [Vibrio cholerae 1587]
 gi|124116081|gb|EAY34901.1| hemK protein [Vibrio cholerae 1587]
          Length = 286

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLSLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPMRQVTGIDLRPEAAELARENATRLAIHNAQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|261209905|ref|ZP_05924206.1| Polypeptide chain release factor methylase [Vibrio sp. RC341]
 gi|260841091|gb|EEX67616.1| Polypeptide chain release factor methylase [Vibrio sp. RC341]
          Length = 286

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 45/198 (22%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     + G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALVDGELLDLGTG 123

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      RV  +++   +   A+ N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPQRRVTGIDLRPEAAALAQENATRLAIHNTQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP--------------RSGLDDATVGMVQAYPHILYISC 323
            F+ L D      +F  I  +PP              R     A V        I YIS 
Sbjct: 172 WFSPLAD----GTKFALIVSNPPYIEENDPHLSQGDVRFEPQSALVAKENGLADIRYIST 227

Query: 324 NPDSLCRDLSIL--STTH 339
           +      D   L     +
Sbjct: 228 HAPHFLLDGGWLLFEHGY 245


>gi|327484700|gb|AEA79107.1| Methylase of polypeptide chain release factor [Vibrio cholerae
           LMA3894-4]
          Length = 256

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|147918746|ref|YP_687531.1| putative SAM-dependent methyltransferase [uncultured methanogenic
           archaeon RC-I]
 gi|110622927|emb|CAJ38205.1| putative SAM-dependent methyltransferase [uncultured methanogenic
           archaeon RC-I]
          Length = 337

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++++ G G F++  A+    V+AV+    +VE  + NI  NHV N++ V    +E    
Sbjct: 184 VVDMFAGIGPFAIPAAKKAMYVVAVDKNPYAVEYMKRNIQINHVTNIEAVCADVREIKLP 243

Query: 273 MRREREFNRLK 283
            + +R    L 
Sbjct: 244 QQADRAIMNLP 254


>gi|323702677|ref|ZP_08114338.1| PUA domain containing protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323532340|gb|EGB22218.1| PUA domain containing protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 391

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 13/109 (11%)

Query: 212 DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+ +C  G FS+  A+     VL ++IA P++E AR N   N  +++           
Sbjct: 219 RVLDCFCHTGTFSMYAAKFGAREVLGLDIAAPALEVARVNARLNGYSDI----------- 267

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
              +    F+ L+ ++    +F  + +DPP        V   ++ Y  I
Sbjct: 268 CTFKETNSFDELRAMEKAGEKFDVVILDPPAFTKSRQAVEGAIRGYKEI 316


>gi|330818647|ref|YP_004362352.1| Predicted SAM-dependent methyltransferase [Burkholderia gladioli
           BSR3]
 gi|327371040|gb|AEA62396.1| Predicted SAM-dependent methyltransferase [Burkholderia gladioli
           BSR3]
          Length = 417

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 28/203 (13%)

Query: 129 DAWRECAIRLRDALHA-----RKYQIQLIGRANKTKI--CLDRDYVDERLTVAGRTLIYR 181
           +AW+E  +    A         +  + +  +    ++   L  D     L      + Y 
Sbjct: 155 EAWKEAIVAALVAATGCPNVYERSDVSIRQKEGLEQVTGVLAGDAPPPTLIARENGVRYH 214

Query: 182 QIENSFTQPNAGINVHMLEW----VLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLA 236
                   PN       ++      L      + ++L  +C  G FSL  LA    RV++
Sbjct: 215 VDV-----PNGHKTGFYVDQRDNRALVGQLAREREVLNCFCYTGGFSLAALAGGARRVVS 269

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           ++ +  ++  A+ N+AAN ++  +   + +  F       +   RL D      RF  + 
Sbjct: 270 IDSSGDALTLAQRNVAANGLDPARASWLDADAF-------KTLRRLAD---EGERFDLVV 319

Query: 297 VDPPRSG-LDDATVGMVQAYPHI 318
           +DPP+     +      +AY  I
Sbjct: 320 LDPPKFAPAREHVDRAARAYKDI 342


>gi|254291409|ref|ZP_04962202.1| hemK protein [Vibrio cholerae AM-19226]
 gi|150422739|gb|EDN14693.1| hemK protein [Vibrio cholerae AM-19226]
          Length = 286

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLSLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|229524174|ref|ZP_04413579.1| methylase of polypeptide chain release factors [Vibrio cholerae bv.
           albensis VL426]
 gi|229337755|gb|EEO02772.1| methylase of polypeptide chain release factors [Vibrio cholerae bv.
           albensis VL426]
          Length = 286

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|197335225|ref|YP_002155530.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio fischeri MJ11]
 gi|197316715|gb|ACH66162.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio fischeri MJ11]
          Length = 284

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I   R++    L V+  TLI R                ++E  L         +L+L  G
Sbjct: 75  IVGYREFWSLPLKVSPTTLIPRPD-----------TERLVEVALDHLTPNAQSILDLGTG 123

Query: 220 NGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L +A       V+ V+    +VE A+ N   NH+NNV+  + S            
Sbjct: 124 TGAIALAIASEMPTLNVIGVDYQDDAVELAKENAKINHINNVEFRQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                 +    S +F  I  +PP
Sbjct: 172 ----WFEPISLSDKFDIIVSNPP 190


>gi|153825564|ref|ZP_01978231.1| hemK protein [Vibrio cholerae MZO-2]
 gi|149740715|gb|EDM54814.1| hemK protein [Vibrio cholerae MZO-2]
          Length = 286

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|119623238|gb|EAX02833.1| chromosome X open reading frame 34, isoform CRA_c [Homo sapiens]
 gi|119623239|gb|EAX02834.1| chromosome X open reading frame 34, isoform CRA_c [Homo sapiens]
          Length = 373

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 59/277 (21%)

Query: 9   QYEQQLAEK---VDRLRQMMLAF-----------QVPNLQ--------IFRSEPI-HYRM 45
            YE+QL  K     ++ Q + ++            VP  +        I  S  I  YR 
Sbjct: 95  SYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVPKSERLSCLLHPIIPSPVINGYRN 154

Query: 46  RAEFHIWHDGDDL-----YHIMFDQQTK----ERMRIDYFMPGSLLINALMIEMMATIRL 96
           ++ F +    D       +++   +       +   +         +       +    L
Sbjct: 155 KSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLRQSPL 214

Query: 97  EPLLRAK----LFQIDYLTSQSDQAIVTLIYH--RLLDDAWRECAIRLRDA--------- 141
           EP L         ++   T+     +  + +H  +L  +        +++          
Sbjct: 215 EPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKLSQEELHVQKEIVKEFFIRGPGAAC 274

Query: 142 -LHARKYQIQLIGRANKTK----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
            L +  +Q   + R +  +    +     Y+ E L     +L  R   ++F Q N     
Sbjct: 275 GLTSLYFQESTMTRCSHQQSPYQLLFGEPYIFEELL----SLKIRISPDAFFQINTAGAE 330

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF 231
            ML   +    G+  D  LL++ CG G     L+   
Sbjct: 331 -MLYRTVGELTGVNSDTILLDICCGTGKCDWPLSGSA 366


>gi|153828622|ref|ZP_01981289.1| hemK protein [Vibrio cholerae 623-39]
 gi|148875893|gb|EDL74028.1| hemK protein [Vibrio cholerae 623-39]
          Length = 286

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|229522129|ref|ZP_04411546.1| methylase of polypeptide chain release factors [Vibrio cholerae TM
           11079-80]
 gi|229341054|gb|EEO06059.1| methylase of polypeptide chain release factors [Vibrio cholerae TM
           11079-80]
          Length = 286

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLSLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|78101439|pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
           Methyltransferase
 gi|78101440|pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
           Methyltransferase
          Length = 396

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 14/112 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
            L         +L+++   G F++  A    D V+ ++ +  ++E A+ N   N V +  
Sbjct: 210 ALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRX 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           K +  S+            F   + +     +F  + +DPP     +  +  
Sbjct: 270 KFIVGSA------------FEEXEKLQKKGEKFDIVVLDPPAFVQHEKDLKA 309


>gi|229528815|ref|ZP_04418205.1| methylase of polypeptide chain release factors [Vibrio cholerae
           12129(1)]
 gi|229332589|gb|EEN98075.1| methylase of polypeptide chain release factors [Vibrio cholerae
           12129(1)]
          Length = 286

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|254226891|ref|ZP_04920459.1| hemK protein [Vibrio cholerae V51]
 gi|125620573|gb|EAZ48939.1| hemK protein [Vibrio cholerae V51]
          Length = 286

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|225873910|ref|YP_002755369.1| hypothetical protein ACP_2325 [Acidobacterium capsulatum ATCC
           51196]
 gi|225792716|gb|ACO32806.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 452

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            AA +   G  L++    G F+L LA+   RV  V+I++ ++E A  N+AAN        
Sbjct: 269 AAAARHAHGQALDICTYQGGFALHLAQVCPRVTGVDISRAALEVAELNLAAN------YS 322

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +++ E          F+ L+D       + TI +DPP        + 
Sbjct: 323 ALAASEV--DWIEANAFDLLRDWSDAGNAYDTIVLDPPAFAKSKRALE 368


>gi|229513824|ref|ZP_04403286.1| methylase of polypeptide chain release factors [Vibrio cholerae TMA
           21]
 gi|229349005|gb|EEO13962.1| methylase of polypeptide chain release factors [Vibrio cholerae TMA
           21]
          Length = 286

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N + ++ S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNAQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|218290104|ref|ZP_03494266.1| methyltransferase small [Alicyclobacillus acidocaldarius LAA1]
 gi|218239813|gb|EED07002.1| methyltransferase small [Alicyclobacillus acidocaldarius LAA1]
          Length = 413

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 14/102 (13%)

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKE 268
             +L+ +C  G F++  L      V AV+I+  +VE AR N   N  ++       ++  
Sbjct: 237 AHVLDCFCHTGAFAVHALHYGAAHVTAVDISADAVELARQNARRNGVLDRADFAVANA-- 294

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                     F+ L++ D    R+  + +DPP       ++ 
Sbjct: 295 ----------FDYLREQDARGARYDVVILDPPAFAKSRQSIE 326


>gi|182418466|ref|ZP_02949760.1| ribosomal protein L11 methyltransferase [Clostridium butyricum
           5521]
 gi|237666515|ref|ZP_04526500.1| ribosomal protein L11 methyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182377848|gb|EDT75392.1| ribosomal protein L11 methyltransferase [Clostridium butyricum
           5521]
 gi|237657714|gb|EEP55269.1| ribosomal protein L11 methyltransferase [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 314

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 74/202 (36%), Gaps = 4/202 (1%)

Query: 87  MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARK 146
            I ++       +++A   Q D +    D     L     +D    E ++  ++ +H   
Sbjct: 54  DINILEHKGNAAVVKAYFSQDDKVDEIIDTVKKGLEELEKMDIEIGEGSVSYKE-MHEED 112

Query: 147 YQIQLIGRANKTKIC--LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
           +           KI   +    + E+   + + L+                  M    L 
Sbjct: 113 WANNWKQYYKPVKITDKIVIKPIWEQYEESEKDLVIELDPGMAFGTGTHETTRMCIQALD 172

Query: 205 ATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                   + ++ CG+G  ++  A+     V+ V++   +V++A+ N+  N+++N++I+ 
Sbjct: 173 KYVEPDTTVFDVGCGSGILAIAGAKLGAKHVVGVDLDPVAVDSAKENVGFNNLDNIEILE 232

Query: 264 MSSKEFTQAMRREREFNRLKDI 285
            +  +  +        N + +I
Sbjct: 233 GNLLDVVEGKADIVVANIIAEI 254


>gi|322689524|ref|YP_004209258.1| hypothetical protein BLIF_1341 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691481|ref|YP_004221051.1| hypothetical protein BLLJ_1292 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456337|dbj|BAJ66959.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460860|dbj|BAJ71480.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 200

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    + GD L+L CG G  +L LA       V AV++ + +V+    N  AN   N+  
Sbjct: 35  APEPPLTGDFLDLGCGWGPIALTLAFESPEANVWAVDVNERAVDLTHANAQANGHTNIHT 94

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            ++           +  F      D+    F  I+ +PP     +A   ++ A+
Sbjct: 95  AQVDESSTPLPAENQPAFCETVPSDLT---FDVIWSNPPIRVGKEALHTLLMAW 145


>gi|239621147|ref|ZP_04664178.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515608|gb|EEQ55475.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 218

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    + GD L+L CG G  +L LA       V AV++ + +V+    N  AN   N+  
Sbjct: 53  APEPPLTGDFLDLGCGWGPIALTLAFESPEANVWAVDVNERAVDLTHANAQANGHTNIHT 112

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            ++           +  F      D+    F  I+ +PP     +A   ++ A+
Sbjct: 113 AQVDESSTPLPAENQPAFCETVPSDLT---FDVIWSNPPIRVGKEALHTLLMAW 163


>gi|23465867|ref|NP_696470.1| hypothetical protein BL1306 [Bifidobacterium longum NCC2705]
 gi|227547538|ref|ZP_03977587.1| possible 16S rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|317483527|ref|ZP_07942511.1| methyltransferase small domain-containing protein [Bifidobacterium
           sp. 12_1_47BFAA]
 gi|23326568|gb|AAN25106.1| conserved hypothetical protein possibly in upfoo20 [Bifidobacterium
           longum NCC2705]
 gi|227211948|gb|EEI79844.1| possible 16S rRNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|316915017|gb|EFV36455.1| methyltransferase small domain-containing protein [Bifidobacterium
           sp. 12_1_47BFAA]
          Length = 218

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    + GD L+L CG G  +L LA       V AV++ + +V+    N  AN   N+  
Sbjct: 53  APEPPLTGDFLDLGCGWGPIALTLAFESPEANVWAVDVNERAVDLTHANAQANGHTNIHT 112

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            ++           +  F      D+    F  I+ +PP     +A   ++ A+
Sbjct: 113 AQVDESSTPLPAENQPAFCETVPSDLT---FDVIWSNPPIRVGKEALHTLLMAW 163


>gi|315179417|gb|ADT86331.1| hemK protein [Vibrio furnissii NCTC 11218]
          Length = 278

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 38/184 (20%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +     +LLDD          DAL AR+   + +       I  +R++    L V+  TL
Sbjct: 30  LLTWPDKLLDD----TTHAAFDALLARRLTGEPVAY-----IIGEREFWSLPLKVSPSTL 80

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLA 236
           I R                ++E  L   + + GD+L+L  G G  +L LA      RV+ 
Sbjct: 81  IPRPD-----------TERLVEVALEKAQTLTGDILDLGTGTGAIALALASELPQRRVVG 129

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +++   + + A  N    H+ NV  ++ S                  +   H  +F  I 
Sbjct: 130 IDLRDEAQQLASDNANRLHLTNVTFLQGS----------------WFEPLSHGTKFALIV 173

Query: 297 VDPP 300
            +PP
Sbjct: 174 SNPP 177


>gi|295090909|emb|CBK77016.1| SAM-dependent methyltransferase [Clostridium cf. saccharolyticum
           K10]
          Length = 401

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 31/211 (14%)

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           + ++  I  R+L     E  IR+R        +++L     +TK  +  ++ D ++ +  
Sbjct: 136 KPLIVEILKRIL----AEDGIRIRGVYERSDAKVRLQEGMERTKGFIGEEF-DTKVEIVE 190

Query: 176 RTLIYRQI-----ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-R 229
             + Y        +  F              +          +L+ +   G+F+L  A  
Sbjct: 191 NGVRYLVDVKDGQKTGFF------LDQKYNRLAIQKLCRGKRVLDCFTHTGSFALNAAVS 244

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               VL V+ ++  V  AR N   N V + V  V     E             L +++  
Sbjct: 245 GASEVLGVDASELGVSQARENARLNQVSDRVSFVCADVFEL------------LPELEKK 292

Query: 289 SYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
             +F  + +DPP       +    V+ Y  I
Sbjct: 293 GEKFDVVILDPPAFTKSRSSVKNAVKGYREI 323


>gi|167822225|ref|ZP_02453696.1| predicted SAM-dependent methyltransferase [Burkholderia
           pseudomallei 9]
          Length = 291

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 107 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 166

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 167 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 216


>gi|320335602|ref|YP_004172313.1| SAM-dependent methyltransferase [Deinococcus maricopensis DSM
           21211]
 gi|319756891|gb|ADV68648.1| SAM-dependent methyltransferase [Deinococcus maricopensis DSM
           21211]
          Length = 391

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +G  L+++  +G+F L LA     V  ++ +  ++  A  N+  N   NV     ++   
Sbjct: 218 RGAALDVFSYHGSFGLHLAPGAAHVELIDASGAALARAEENMRLNGHTNVTYTEANA--- 274

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                    F+RL+D++    RF TI +DPP       
Sbjct: 275 ---------FDRLRDLESAGQRFDTISLDPPAFAKRAK 303


>gi|256810678|ref|YP_003128047.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256793878|gb|ACV24547.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 385

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           L         +L++ C  G FS+  A     V+ V+++K +++ A  N+  N++  +  +
Sbjct: 206 LERFVKEGDRVLDICCYTGGFSVHAAIRGAEVVGVDLSKKALKTAEENMELNNIPKDKYE 265

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +  ++            F  +K+      +F  + +DPP        + 
Sbjct: 266 FIEGNA------------FEVMKEFIEDGEKFDVVVLDPPAFAQSKKALK 303


>gi|154150773|ref|YP_001404391.1| methyltransferase type 11 [Candidatus Methanoregula boonei 6A8]
 gi|153999325|gb|ABS55748.1| Methyltransferase type 11 [Methanoregula boonei 6A8]
          Length = 180

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 27/71 (38%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +          +L+L CG G  ++  A    +V A++    ++  A+         N++ 
Sbjct: 20  LFKMNITSSDTVLDLGCGTGKVAIAAALRAKKVYAIDRRPEAIAYAQKAAQEAGAANIEF 79

Query: 262 VRMSSKEFTQA 272
               + +F  +
Sbjct: 80  FCGEAADFLAS 90


>gi|167717569|ref|ZP_02400805.1| predicted SAM-dependent methyltransferase [Burkholderia
           pseudomallei DM98]
          Length = 286

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 102 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 161

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 162 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 211


>gi|15669845|ref|NP_248659.1| hypothetical protein MJ_1649 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3334438|sp|Q59043|Y1649_METJA RecName: Full=Putative ribosomal RNA large subunit
           methyltransferase MJ1649
 gi|1592232|gb|AAB99670.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 387

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 27/136 (19%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           L         +L++ C  G FS+  A     V+ V+++K +++ A  NI  N++  +  +
Sbjct: 207 LEKFIKEGDRVLDICCYTGGFSVHAAIRGAEVVGVDLSKKALKLAEENIELNNIPKDRYE 266

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-------------RSGLDDA 307
            +  ++ E  + M  ++E            +F  + +DPP             R+     
Sbjct: 267 FIEGNAFEVMKEMIEDKE------------KFDVVILDPPAFTQTEDDIKNALRAYASLN 314

Query: 308 TVGMVQAYPHILYISC 323
            +G+  A    +  SC
Sbjct: 315 YLGIKLAKRIFVTCSC 330


>gi|295397937|ref|ZP_06807994.1| methyltransferase domain protein [Aerococcus viridans ATCC 11563]
 gi|294973822|gb|EFG49592.1| methyltransferase domain protein [Aerococcus viridans ATCC 11563]
          Length = 217

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 29/170 (17%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPN-AGINVHMLEWVLAATKGIQGDLLELYCGN 220
           L  D+      +  R+  ++     F++ N       MLE  L   + + GDLL+L  G 
Sbjct: 26  LGHDFKQYETVIFDRSFTFKTDSGVFSRDNLDFGTRVMLE-ALDLDQLVPGDLLDLGAGY 84

Query: 221 GNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G   +++        +  V+I++ ++  A+ N AANHV+NV     ++ E          
Sbjct: 85  GPVGVIMGTMLPDRAIYGVDISERAIGLAKDNAAANHVDNVTFQVSNAYE---------- 134

Query: 279 FNRLKDIDIHSYRFKTIFVDPP-RSGLD------DATVGMVQAYPHILYI 321
                   I    F  I  +PP R+G +         +  ++    I Y+
Sbjct: 135 -------AIAKRDFGVILTNPPVRAGKEMVHHFMSEAIHYLKPGGEI-YV 176


>gi|167736612|ref|ZP_02409386.1| predicted SAM-dependent methyltransferase [Burkholderia
           pseudomallei 14]
          Length = 286

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 102 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 161

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 162 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 211


>gi|283796001|ref|ZP_06345154.1| hydrogenase-4, F subunit [Clostridium sp. M62/1]
 gi|291076646|gb|EFE14010.1| hydrogenase-4, F subunit [Clostridium sp. M62/1]
 gi|295114690|emb|CBL35537.1| SAM-dependent methyltransferase [butyrate-producing bacterium
           SM4/1]
          Length = 401

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 31/211 (14%)

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           + ++  I  R+L     E  IR+R        +++L     +TK  +  ++ D ++ +  
Sbjct: 136 KPLIVEILKRIL----AEDGIRIRGVYERSDAKVRLQEGMERTKGFIGEEF-DTKVEIVE 190

Query: 176 RTLIYRQI-----ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-R 229
             + Y        +  F              +          +L+ +   G+F+L  A  
Sbjct: 191 NGVRYLVDVKDGQKTGFF------LDQKYNRLAIQKLCRGKRVLDCFTHTGSFALNAAVS 244

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               VL V+ ++  V  AR N   N V + V  V     E             L +++  
Sbjct: 245 GASEVLGVDASELGVSQARENARLNQVSDRVSFVCADVFEL------------LPELEKK 292

Query: 289 SYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
             +F  + +DPP       +    V+ Y  I
Sbjct: 293 GEKFDVVILDPPAFTKSRSSVKNAVKGYREI 323


>gi|15669849|ref|NP_248663.1| hypothetical protein MJ_1653 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3334439|sp|Q59047|Y1653_METJA RecName: Full=Putative ribosomal RNA large subunit
           methyltransferase MJ1653
 gi|1500554|gb|AAB99674.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 385

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           L         +L++ C  G FS+  A     V+ V+++K +++ A  N+  N++  +  +
Sbjct: 206 LEKFIKEGDRVLDICCYTGGFSVHAAIRGAEVVGVDLSKKALKLAEENMELNNIPKDRYE 265

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +  ++            F  +++      +F  + +DPP        + 
Sbjct: 266 FIEGNA------------FKVMEEFIEDGEKFDVVILDPPAFAQSKKALK 303


>gi|167892318|ref|ZP_02479720.1| predicted SAM-dependent methyltransferase [Burkholderia
           pseudomallei 7894]
 gi|167900815|ref|ZP_02488020.1| predicted SAM-dependent methyltransferase [Burkholderia
           pseudomallei NCTC 13177]
          Length = 294

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 110 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 169

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 170 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 219


>gi|167843820|ref|ZP_02469328.1| predicted SAM-dependent methyltransferase [Burkholderia
           pseudomallei B7210]
 gi|167909035|ref|ZP_02496126.1| predicted SAM-dependent methyltransferase [Burkholderia
           pseudomallei 112]
          Length = 287

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 103 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 162

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 163 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 212


>gi|167835018|ref|ZP_02461901.1| hypothetical protein Bpse38_00924 [Burkholderia thailandensis
           MSMB43]
          Length = 423

 Score = 62.7 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A    + D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 239 RALVAQYARERDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 298

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       R   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 299 RAEWLDADAF-------RTLRRLVD---EGERFDLIVLDPPKFAPTRDSVERAARAYKDI 348


>gi|289548756|ref|YP_003473744.1| hypothetical protein Thal_0985 [Thermocrinis albus DSM 14484]
 gi|289182373|gb|ADC89617.1| protein of unknown function Met10 [Thermocrinis albus DSM 14484]
          Length = 391

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 14/103 (13%)

Query: 210 QGDL-LELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            GDL L+L+C  G F+L + R     V+AV+I+ P++E  + N   N+++ +  V  ++ 
Sbjct: 217 PGDLCLDLFCHTGGFALNMKRKGAKEVIAVDISAPALETGKKNAQLNNLDGIHWVEDNAF 276

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +F + M +E              +F  + +DPP      A++ 
Sbjct: 277 DFLRKMHKE------------GNQFDVVVIDPPSFTKTKASLE 307


>gi|295105451|emb|CBL02995.1| SAM-dependent methyltransferase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 409

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 14/124 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G+F+L  A+    RV A +I+  ++  A+ N   N +N
Sbjct: 225 YNRRAVARLAAGHTVLDCFTHTGSFALNAAKGGAARVTAADISAEAIAMAKRNAERNGLN 284

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316
           N+  +             E  F  L  ++   + +  I +DPP       TV   ++ Y 
Sbjct: 285 NMDFLC------------EDTFALLPRLEKEGHPYDFIILDPPAFTKARRTVENAMRGYK 332

Query: 317 HILY 320
            I Y
Sbjct: 333 EINY 336


>gi|294496018|ref|YP_003542511.1| RNA cap guanine-N2 methyltransferase [Methanohalophilus mahii DSM
           5219]
 gi|292667017|gb|ADE36866.1| RNA cap guanine-N2 methyltransferase [Methanohalophilus mahii DSM
           5219]
          Length = 350

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 14/94 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L ++ CG G  ++  A+   +V A+EI    +E A+ N     VNNV+ +   + +    
Sbjct: 39  LADISCGIGGQTIFFAKECKKVYAIEIDPVKIEHAKRNCQLYGVNNVEFICGDALD---- 94

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                      ++         +F DP R   + 
Sbjct: 95  ----------PEVIQKLPELDVVFSDPERPQKEK 118


>gi|223999803|ref|XP_002289574.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974782|gb|EED93111.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 680

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 31/108 (28%)

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY----------------------------PHIL 319
            +     + VDPPR GLD+  +  +                                 ++
Sbjct: 573 QALGADVLIVDPPRKGLDEPVIQQLCQPYNAIQPYVESPTMLSHLARHTINWTNDVRTLI 632

Query: 320 YISCNPDSLCRDLSIL---STTHTIERLALFDQFPYTRHMECGVLLVR 364
           Y+SC  D+L RD   +   S    +E    +  FP + H+E  V+  R
Sbjct: 633 YVSCGFDALARDCDQILSSSAGWKLESATGYVLFPGSNHVETVVVFRR 680



 Score = 38.1 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 40/224 (17%)

Query: 35  IFRSEPIHYRMRAEFHI-----WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIE 89
           +  S    +R +A+  +     W         ++++ +   + I         IN  +  
Sbjct: 219 VVPSSTTQWRTQAKLAVAPSSTWSRAQGCKLGLYERYSHNVLSIPDCAVHHPSINRAVEM 278

Query: 90  MMATIRL-----------EPLLRAKLFQIDYLTSQSDQAIVTLIYH-RLLDDAWRECAIR 137
           ++   +            E LLR    Q++  T +    +V      +            
Sbjct: 279 IVEATKKVRTPAFTEDTGEGLLRYVQLQVELSTGKICLTLVMNAEKLKECQPHLSFLVKE 338

Query: 138 LRDALHARKYQIQLIGRANKTK--ICLDRD-----------YVDERLT--------VAGR 176
           L+     ++    +    N++K      RD           Y+ E++             
Sbjct: 339 LKRMDDKKEVWHSIWCHCNESKGNAIFSRDSSHWHPLEGPPYIREKIPGSNPNDDPEVKE 398

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
            L+Y      F Q N       +   +  +      + ELY G 
Sbjct: 399 GLLY-FSPMVFRQGNLEGFGK-IAKEVRESIPRGSKVCELYAGV 440


>gi|260767752|ref|ZP_05876687.1| Polypeptide chain release factor methylase [Vibrio furnissii CIP
           102972]
 gi|260617261|gb|EEX42445.1| Polypeptide chain release factor methylase [Vibrio furnissii CIP
           102972]
          Length = 278

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 76/220 (34%), Gaps = 52/220 (23%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +     ++LDD          DAL AR+   + +       I  +R++    L V+  TL
Sbjct: 30  LLTWPDKILDD----TTHAAFDALLARRLTGEPVAY-----IIGEREFWSLPLKVSPSTL 80

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLA 236
           I R                ++E  L   + + GD+L+L  G G  +L LA      RV+ 
Sbjct: 81  IPRPD-----------TERLVEVALEKAQTLDGDILDLGTGTGAIALALASELPQRRVVG 129

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +++   + + A  N    H+ NV  ++ S                  +   H  +F  I 
Sbjct: 130 IDLRDEAQQLASDNANRLHLTNVTFLQGS----------------WFEPLSHGTKFALIV 173

Query: 297 VDPP--------------RSGLDDATVGMVQAYPHILYIS 322
            +PP              R     A V        I YIS
Sbjct: 174 SNPPYIEENDPHLAQGDVRFEPKSALVAADNGLADIKYIS 213


>gi|160945353|ref|ZP_02092579.1| hypothetical protein FAEPRAM212_02873 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443084|gb|EDP20089.1| hypothetical protein FAEPRAM212_02873 [Faecalibacterium prausnitzii
           M21/2]
          Length = 409

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G+F+L  A+    RV A +I+  ++  A+ N   N ++
Sbjct: 225 YNRRAVARLAAGHTVLDCFTHTGSFALNAAKGGAARVTAADISAEAIAMAKRNAERNGLD 284

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316
           N+  +             E  F  L  ++     +  I +DPP       TV   ++ Y 
Sbjct: 285 NMDFLC------------EDTFALLPRLEKEGSPYDFIILDPPAFTKARRTVENAMRGYK 332

Query: 317 HILY 320
            I Y
Sbjct: 333 EINY 336


>gi|187251747|ref|YP_001876229.1| putative SAM-dependent methyltransferase [Elusimicrobium minutum
           Pei191]
 gi|186971907|gb|ACC98892.1| putative SAM-dependent methyltransferases [Elusimicrobium minutum
           Pei191]
          Length = 390

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 12/99 (12%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
           +L+LY   G F +  A++   +V   + +  +VE A  N   N V + V   R  ++   
Sbjct: 217 VLDLYSYIGAFGIYAAKNGAAQVWGTDSSALAVEYANKNAKLNGVEDIVTYKRDDAERLL 276

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            AM ++     L D      +   + +DPP    +  ++
Sbjct: 277 SAMGKK----ELPD------QPDFVLLDPPAFVKNRKSL 305


>gi|297518199|ref|ZP_06936585.1| 23S rRNA methyluridine methyltransferase [Escherichia coli OP50]
          Length = 217

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 65/209 (31%), Gaps = 20/209 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           S   +     +QL+ K   L+ ++  F V             +R +A+  +    +    
Sbjct: 13  SCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAKMVVSGSVEKPLL 72

Query: 61  IMFDQQT--KERMRIDYFMPGSLLINALMIEMMATIRLEPLL----RAKLFQIDYLTSQS 114
            M  +    ++      +      + + +   +A   L P      R +L  I    SQS
Sbjct: 73  GMLHRDGTPEDLCDCPLYPASFAPVFSALKPFIARAGLTPYNVARKRGELKYILLTESQS 132

Query: 115 DQAIVTLIYHR------LLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRD 165
           D  ++     R       L  A      +L   L      IQ +  A    +T+I L   
Sbjct: 133 DGGMMLRFVLRSETKLAQLRKALPWLQEQLPQ-LKVITVNIQPVHMAIMEGETEIYLTE- 190

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGI 194
              + L      +       SF Q N  +
Sbjct: 191 --QQALAERFNDVPLWVRPQSFFQTNPAV 217


>gi|149377315|ref|ZP_01895061.1| methyltransferase small [Marinobacter algicola DG893]
 gi|149358412|gb|EDM46888.1| methyltransferase small [Marinobacter algicola DG893]
          Length = 398

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 83/234 (35%), Gaps = 39/234 (16%)

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHRLLDDAWRECAIRLRD 140
              + +   +  +P  R      D L+     + D  +V  I      +  +E  +R   
Sbjct: 88  ETALALRERLFDKPFYRWVFGDSDGLSGLVIDRFDDVVVVQI-STAGMEQMKESIVRAVQ 146

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVD-------ERLTVAGRTLIYRQ-IENS-----F 187
            L A    I L       K+     Y++       + L V    + +   +E       F
Sbjct: 147 RL-AHPRAIILKNDGKMRKVEGLDTYIEQAHGPEIDLLPVEENGVRFEVPMEGGQKTGWF 205

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEA 246
              +  +N   L+            +L+++   G + +  A     +V  V+ +  ++++
Sbjct: 206 Y--DHRMNRQRLQA-----YAPGKRVLDVFSYVGGWGIQAACAGATQVTCVDSSAGAIDS 258

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +N   N ++N++ +   + +  +A+  E+E            +F  + +DPP
Sbjct: 259 VHHNAKINGLDNIETIEGDAFDALKALCDEKE------------KFDIVVLDPP 300


>gi|9294083|dbj|BAB01935.1| unnamed protein product [Arabidopsis thaliana]
          Length = 511

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/380 (15%), Positives = 105/380 (27%), Gaps = 95/380 (25%)

Query: 18  VDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFM 77
           VD        + V +          +R RA+  +    D+    ++ + T   + I    
Sbjct: 70  VDEASDFFKRYGVDDFTFDSCRLWGWRCRAKLAVRGSSDNALIGLYQEGTHTVVDIPECK 129

Query: 78  PG------SLLINALMIEMMATIRLEPL-----------LRAKLFQIDYLTS-------- 112
                      INA +  +   I++  +           LR     +   ++        
Sbjct: 130 CNFDCAAHHPNINAAIELLREGIKVFDVVPFDEDQGTGDLRYVQMAVTTHSTNLRAPERY 189

Query: 113 QSDQAIVTLIY-HRLLDDAWRECAIRLRDAL-----HARKYQIQLIGRAN----KTKICL 162
           ++ +  V+L++  R       +    L   L        K+ +     AN       I  
Sbjct: 190 KNGKVQVSLVWNSRNERSHNADKLQALSTYLWRKGGPNSKFHLIHSVWANFQTSTNNIIF 249

Query: 163 DRDY----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
              +     +         +      +SF Q N      +L W L         + +LY 
Sbjct: 250 GNRWRHLLGERDFWEHVGGIDISLDPSSFGQANTRAFDSLL-WKLHKYVPGGSSVADLYA 308

Query: 219 GNGNFSLVLARH-------------------------------------FDRVLAVEIAK 241
           G G   L LA                                       F  V  +E+ K
Sbjct: 309 GAGVIGLSLATSRKCRQEQRLFTSVLNLKRLYMFILMKRLTQYFILKSDFSSVKCIEVNK 368

Query: 242 PSVEAARYNIAA--NHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            +  +    I    N +N  +      +             N L  I         + VD
Sbjct: 369 EARLSFEKTIQRLPNSLNCSISWHHADA-----------SVNPLSWI----IGSDVVVVD 413

Query: 299 PPRSGLDDATVGMVQAYPHI 318
           PPR GLD +   M+++ P I
Sbjct: 414 PPRRGLDASLRQMLESVPSI 433


>gi|153006689|ref|YP_001381014.1| hypothetical protein Anae109_3851 [Anaeromyxobacter sp. Fw109-5]
 gi|152030262|gb|ABS28030.1| protein of unknown function Met10 [Anaeromyxobacter sp. Fw109-5]
          Length = 388

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 53/124 (42%), Gaps = 3/124 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A +  +G  L+ +   G F+L LA   + V AVE+   +    R N+  N   NV++V
Sbjct: 209 LRAGEYARGRCLDCFAYAGGFALQLATRAEHVTAVEMQPTAAALLRENVTLNLAANVEVV 268

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMVQAYPHIL 319
             ++ ++ +    E     L  +D  ++      +   R G  +     + +++    ++
Sbjct: 269 EANAFDYLRDRAEEEPAFDLVVLDPPAFAKSKDALAAARRGYKEVNLRALQVLRPGGILV 328

Query: 320 YISC 323
             SC
Sbjct: 329 TASC 332


>gi|94971793|ref|YP_593841.1| SAM-dependent methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553843|gb|ABF43767.1| SAM-dependent methyltransferase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 405

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 28/136 (20%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            AA +  +GD L+++   G F+L L ++  RV  V++++P++E A  N   N   N++ +
Sbjct: 227 AAAAQYARGDALDVFTYQGGFALHLYQNCRRVTGVDMSRPALEVAEENATLNEY-NLEWI 285

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--------------- 307
             ++            F+ LKD  +    + TI +DPP                      
Sbjct: 286 EANA------------FDYLKDQSVGGRAYDTIVLDPPAFAKTAKNFDTAIRGYKELNLR 333

Query: 308 TVGMVQAYPHILYISC 323
            + M++A   ++  SC
Sbjct: 334 ALKMLRAGGTLISCSC 349


>gi|313239635|emb|CBY14532.1| unnamed protein product [Oikopleura dioica]
          Length = 161

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 14/86 (16%)

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHI---LYISCNPDS-LCR----DL------SILSTT 338
               VDPPR+GL    + +++    I   +++SC+  + + +    DL      S+    
Sbjct: 20  TVAIVDPPRAGLPKKVISVLRGNESIESLIFVSCDSSNKMAQGNIVDLCKPQSKSLRGDP 79

Query: 339 HTIERLALFDQFPYTRHMECGVLLVR 364
             +      D FP T H E   LL+R
Sbjct: 80  FRVALAKPVDLFPQTPHHELIFLLLR 105


>gi|288817382|ref|YP_003431729.1| SAM dependent methyl transferase [Hydrogenobacter thermophilus
           TK-6]
 gi|288786781|dbj|BAI68528.1| SAM dependent methyl transferase [Hydrogenobacter thermophilus
           TK-6]
 gi|308750989|gb|ADO44472.1| Methyltransferase type 11 [Hydrogenobacter thermophilus TK-6]
          Length = 391

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 120/347 (34%), Gaps = 50/347 (14%)

Query: 13  QLAEK---VDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLY--HIMFDQQT 67
           Q+  K    ++L+        P +  +  +P     + +  +  D    +  +   + Q 
Sbjct: 3   QVRVKPGVEEKLKSYFPWVYKPEITSYSKKPQ----KGDHVVVRDAGGHFLGYGYINPQA 58

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRL---EPLLRAKLFQIDYLTSQSDQAIVTLIY- 123
              +R+  F     +   L+ E +           L    F++ +        +V  +Y 
Sbjct: 59  NISIRLLSFEKEKKISYELIKERVEQAYNYRKSLSLNTDAFRLIHSEGDFLPGLVMDVYG 118

Query: 124 -------HRLLDDAWRECAI-RLRDALHARKYQIQLIGRANKTK-------ICLDRDYVD 168
                       +A RE  I  + + L  +    +    A K +       +   +  V 
Sbjct: 119 DYAVVEFTTFGMNAMREWVISAILEVLKPKGIYEKRNEYAQKAEGFKTEEGVIYGK--VP 176

Query: 169 ERLTVAGRTLIYRQ-IENS----FT--QPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
             +T+    L Y   I       F   Q        M+  ++          L+L+C  G
Sbjct: 177 PEITIYEGDLKYYVNIPQGQKTGFYLDQ---RKARSMIRQLVKPGY----RCLDLFCHTG 229

Query: 222 NFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
            F+L + +     VLAV+I+  ++E A+ N   N ++N+  +  ++ +F + + +E +  
Sbjct: 230 GFALNMRKAGAGEVLAVDISAQALEVAKRNAELNSLDNIVWMEENAFDFMRKLHKEGQVF 289

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH----ILYISC 323
            L  +D  S+      V     G  +  V  +         ++Y SC
Sbjct: 290 DLVLMDPPSFAKNRASVPNALRGYKELCVRGLHVVKRGGYLVIY-SC 335


>gi|218667536|ref|YP_002425370.1| hypothetical protein AFE_0892 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218519749|gb|ACK80335.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 407

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 36/213 (16%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             + Q   L    D  ++T     LL  A           L A     +L G  ++ ++ 
Sbjct: 128 HLVLQAGSLGMDRDLPLITAALQGLLRPAGI--------LLKASGAARRLEGLEDRVEVL 179

Query: 162 LDRDYVDERLTVAGRTLIYRQIENS------FTQPNAGINVHMLEWVLAATKGIQGDLLE 215
               ++ ERL V     +++           F         H               +L+
Sbjct: 180 FG--HIPERLEVWENDCLFQVDPRGGQKTGWFY-------DHRANRRRLRDFAQGRRVLD 230

Query: 216 LYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
            +   G F++ LA+     V AV+ + P++     N   N V  +  +   + E    +R
Sbjct: 231 CFAYLGGFAIPLAKAGASAVTAVDSSAPALAILEENARRNEVEGLHSIHGDAMETLHNLR 290

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
              E            +F  I +DPP       
Sbjct: 291 DRGE------------QFDLIVLDPPALIKSKK 311


>gi|198283142|ref|YP_002219463.1| methyltransferase small [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198247663|gb|ACH83256.1| methyltransferase small [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 407

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 36/213 (16%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
             + Q   L    D  ++T     LL  A           L A     +L G  ++ ++ 
Sbjct: 128 HLVLQAGSLGMDRDLPLITAALQGLLRPAGI--------LLKASGAARRLEGLEDRVEVL 179

Query: 162 LDRDYVDERLTVAGRTLIYRQIENS------FTQPNAGINVHMLEWVLAATKGIQGDLLE 215
               ++ ERL V     +++           F         H               +L+
Sbjct: 180 FG--HIPERLEVWENDCLFQVDPRGGQKTGWFY-------DHRANRRRLRDFAQGRRVLD 230

Query: 216 LYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
            +   G F++ LA+     V AV+ + P++     N   N V  +  +   + E    +R
Sbjct: 231 CFAYLGGFAIPLAKAGASAVTAVDSSAPALAILEENARRNEVEGLHSIHGDAMETLHNLR 290

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
              E            +F  I +DPP       
Sbjct: 291 DRGE------------QFDLIVLDPPALIKSKK 311


>gi|238028908|ref|YP_002913139.1| putative SAM-dependent methyltransferase [Burkholderia glumae BGR1]
 gi|237878102|gb|ACR30435.1| Predicted SAM-dependent methyltransferase [Burkholderia glumae
           BGR1]
          Length = 417

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  LA    RV++++ +  ++  A+ N++AN ++  
Sbjct: 233 RALVGQVSNGRDVLNCFCYTGGFSLAALAGGASRVVSIDSSGDALALAQRNVSANGLDPA 292

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  + +DPP+     +      +AY  I
Sbjct: 293 RASWLDADAF-------KTLRRLAD---EGERFDVVVLDPPKFAPAREHVDRAARAYKDI 342


>gi|170761495|ref|YP_001788270.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A3
           str. Loch Maree]
 gi|226710066|sp|B1KZN5|PRMA_CLOBM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169408484|gb|ACA56895.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A3
           str. Loch Maree]
          Length = 312

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 68/191 (35%), Gaps = 17/191 (8%)

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             ++  +  +D       + +V +  H++ ++ W     +            +    +NK
Sbjct: 81  DYIKKSVSNLDQFGIDKGEGLVEV--HKVNEEDWENNWKK----------YYKPTKVSNK 128

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             I      + E        +I                  M    L         + ++ 
Sbjct: 129 IVI----KPIWENYDKKQEEIIVELDPGMAFGTGTHETTRMCINALEKYIKEDRTVFDIG 184

Query: 218 CGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           CG+G  S+  A+     V+ V++   +V++++ NI  N+++N++I+  +  E  +     
Sbjct: 185 CGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGNLMEVVEGRANI 244

Query: 277 REFNRLKDIDI 287
              N + D+ I
Sbjct: 245 VVANIIADVII 255


>gi|168179388|ref|ZP_02614052.1| ribosomal protein L11 methyltransferase [Clostridium botulinum NCTC
           2916]
 gi|182669588|gb|EDT81564.1| ribosomal protein L11 methyltransferase [Clostridium botulinum NCTC
           2916]
          Length = 312

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 68/191 (35%), Gaps = 17/191 (8%)

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             ++  +  +D       + +V +  H++ ++ W     +            +    +NK
Sbjct: 81  DYIKKSVSNLDQFGIDKGEGLVEV--HKVNEEDWENNWKK----------YYKPTKVSNK 128

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             I      + E        +I                  M    L         + ++ 
Sbjct: 129 IVI----KPIWENYDKKQEEIIVELDPGMAFGTGTHETTRMCINALEKYIKEDRTVFDIG 184

Query: 218 CGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           CG+G  S+  A+     V+ V++   +V++++ NI  N+++N++I+  +  E  +     
Sbjct: 185 CGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGNLMEVVEGRANI 244

Query: 277 REFNRLKDIDI 287
              N + D+ I
Sbjct: 245 VVANIIADVII 255


>gi|148380909|ref|YP_001255450.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933190|ref|YP_001385217.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935106|ref|YP_001388686.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. Hall]
 gi|226950383|ref|YP_002805474.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A2
           str. Kyoto]
 gi|166223407|sp|A7FXL3|PRMA_CLOB1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223408|sp|A5I638|PRMA_CLOBH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254783051|sp|C1FVT8|PRMA_CLOBJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|148290393|emb|CAL84520.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929234|gb|ABS34734.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931020|gb|ABS36519.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A
           str. Hall]
 gi|226840767|gb|ACO83433.1| ribosomal protein L11 methyltransferase [Clostridium botulinum A2
           str. Kyoto]
          Length = 312

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 68/191 (35%), Gaps = 17/191 (8%)

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             ++  +  +D       + +V +  H++ ++ W     +            +    +NK
Sbjct: 81  DYIKKSVSNLDQFGIDKGEGLVEV--HKVNEEDWENNWKK----------YYKPTKVSNK 128

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             I      + E        +I                  M    L         + ++ 
Sbjct: 129 IVI----KPIWENYDKKQEEIIVELDPGMAFGTGTHETTRMCINALEKYIKEDRTVFDIG 184

Query: 218 CGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           CG+G  S+  A+     V+ V++   +V++++ NI  N+++N++I+  +  E  +     
Sbjct: 185 CGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGNLMEVVEGRANI 244

Query: 277 REFNRLKDIDI 287
              N + D+ I
Sbjct: 245 VVANIIADVII 255


>gi|217425089|ref|ZP_03456585.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
 gi|217392109|gb|EEC32135.1| conserved hypothetical protein [Burkholderia pseudomallei 576]
          Length = 425

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 241 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 300

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 301 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 350


>gi|167813710|ref|ZP_02445390.1| hypothetical protein Bpse9_01146 [Burkholderia pseudomallei 91]
          Length = 291

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 107 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 166

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F       +   RL D      RF  I +DPP+  
Sbjct: 167 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFA 200


>gi|154495970|ref|ZP_02034666.1| hypothetical protein BACCAP_00253 [Bacteroides capillosus ATCC
           29799]
 gi|150274853|gb|EDN01909.1| hypothetical protein BACCAP_00253 [Bacteroides capillosus ATCC
           29799]
          Length = 400

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 15/111 (13%)

Query: 211 GDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L+ +   G F+L  A      V+ V+ ++  V  A  N   N V + VK +      
Sbjct: 224 KRVLDCFTHTGAFALNAAVAGAREVIGVDASETGVRQAEENARLNGVEDRVKFLCRDV-- 281

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
                     F+ L ++D +  RF  + +DPP      D+    V+ Y  I
Sbjct: 282 ----------FDLLPEMDRNGERFDVVILDPPAFTKSRDSVKKAVRGYREI 322


>gi|291457545|ref|ZP_06596935.1| putative methyltransferase small domain protein [Bifidobacterium
           breve DSM 20213]
 gi|291380598|gb|EFE88116.1| putative methyltransferase small domain protein [Bifidobacterium
           breve DSM 20213]
          Length = 222

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    + G++L+L CG G  +L LA       V AV++ + ++E    N  AN   N+  
Sbjct: 57  APEPPVSGNVLDLGCGWGPIALALAFASPEANVWAVDVNERALELTHVNAEANGCRNIHT 116

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            ++   E +  +  +R+    + I      F  I+ +PP     +A   ++ A+
Sbjct: 117 TQVD--ETSTPLPADRQSAHCEPIP-GDLTFDAIWSNPPIRIGKEALHTLLMAW 167


>gi|163783320|ref|ZP_02178313.1| hypothetical protein HG1285_13762 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881428|gb|EDP74939.1| hypothetical protein HG1285_13762 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 391

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 122/337 (36%), Gaps = 54/337 (16%)

Query: 13  QLAEK---VDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHD--GDDLYHIMFDQQT 67
           Q+  K    DR+R        P +  +  +P     + E  +  D  G  L +   +   
Sbjct: 3   QIRVKPGIEDRIRGFFPWIYRPEIASYSRKPK----KGELVVVRDFGGKFLGYGYINPDV 58

Query: 68  KERMRIDYFMPGSLLINALMIE-MMATIRLEP--LLRAKLFQIDYLTSQSDQAIVTLIY- 123
              +RI  F     +  +L+ + ++          + +  F++ +        ++  +Y 
Sbjct: 59  SIAVRILSFDKKEPITPSLIKKRILEAYNYRKRLYINSNAFRLVHSEGDLLPGLIVDVYG 118

Query: 124 HRLLDDAWRECAIRLRDA-LHARKYQIQLIGRANKTKICLDR------------DYVDER 170
              + +       R RD  L A    ++  G   K  +   +              V E 
Sbjct: 119 EYAVVEFTTYGMTRFRDVVLEALVEILKPKGIYEKANLTAQKVEGIDAREGVVYGEVPEE 178

Query: 171 LTVAGRTLIY--RQIEN---SFT--QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           + +    L Y     E     F   Q N+          + +        L+++C  G F
Sbjct: 179 VVIWEHDLKYLINIPEGQKTGFFLDQRNS-------RRFVRSLVEPGDRCLDVFCHTGGF 231

Query: 224 SLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           +L + +   +RV+AV++++ ++E  + N   N ++ ++ V+ ++            F+ L
Sbjct: 232 ALNMKKMGAERVVAVDLSELALEVGKRNEELNGLSGIEWVQANA------------FDYL 279

Query: 283 KDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +++D    +F  + +DPP    +  A    ++ Y  +
Sbjct: 280 RELDTKGEKFDVVVIDPPSFAKNKHAVPNALRGYKEL 316


>gi|254295750|ref|ZP_04963207.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|157805784|gb|EDO82954.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
          Length = 425

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 241 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 300

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 301 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 350


>gi|317055290|ref|YP_004103757.1| methyltransferase small [Ruminococcus albus 7]
 gi|315447559|gb|ADU21123.1| methyltransferase small [Ruminococcus albus 7]
          Length = 409

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 21/214 (9%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV----DERLTVAGRTLIY 180
           RLL +      + LR  +      I+ +    + K     D++    +  +T      IY
Sbjct: 146 RLLTEELAADGVTLRGIMERNDVAIRELEGLEQGKGWYRADFLPTPPETPVTEICENGIY 205

Query: 181 RQIE------NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDR 233
            +++        F              + AA       +L+ +   G+F+L  A      
Sbjct: 206 YKVDVENGQKTGFF------LDQKYNRLAAAKLAKGKKVLDCFTHTGSFALNAAFGGAAH 259

Query: 234 VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           V AV++++ +V+ A+ N   N +++ +  V     +    +  E+       +D  ++  
Sbjct: 260 VTAVDVSQFAVDTAKANAERNGLSDKMDFVCGDVFDLLPKLTEEKAGYDFIILDPPAFTK 319

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILYI---SC 323
               V+    G  +     ++  P   Y+   SC
Sbjct: 320 SRKTVNSAERGYKEINYRAMKMLPRGGYLATCSC 353


>gi|262274707|ref|ZP_06052518.1| Polypeptide chain release factor methylase [Grimontia hollisae CIP
           101886]
 gi|262221270|gb|EEY72584.1| Polypeptide chain release factor methylase [Grimontia hollisae CIP
           101886]
          Length = 281

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 18/136 (13%)

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D A  E      + L AR+   + +       I   RD+   RL V   TLI R      
Sbjct: 48  DKALTEDEEAAFNTLLARRKTGEPVAY-----IIGYRDFWSLRLNVEPSTLIPRPD---- 98

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVE 245
                     ++E  L       G +L+L  G G  +L +A  R    V  V++   +V 
Sbjct: 99  -------TERLVELALERLPQGDGAVLDLGTGTGAIALAIASERKDIAVTGVDLRAEAVA 151

Query: 246 AARYNIAANHVNNVKI 261
            A  N   N +NN + 
Sbjct: 152 LAMKNGLENGINNAQF 167


>gi|86160140|ref|YP_466925.1| SAM-dependent methyltransferase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776651|gb|ABC83488.1| SAM-dependent methyltransferase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 389

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 48/111 (43%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A +   G  L+ +   G F+L LAR  +RV AVE+        R N A N   N+++V
Sbjct: 210 LRAGEYATGRCLDCFSYAGGFALQLARRAERVTAVEMQPVPAGLLRENAALNRAENLEVV 269

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             ++ ++ +    E     L  +D  ++      +   R G  +  +  +Q
Sbjct: 270 EENAFDYLRDRSEEEPAFDLVVLDPPAFAKNKESLPAARRGYKEVNLRALQ 320


>gi|219852672|ref|YP_002467104.1| methyltransferase small [Methanosphaerula palustris E1-9c]
 gi|219546931|gb|ACL17381.1| methyltransferase small [Methanosphaerula palustris E1-9c]
          Length = 204

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 21/138 (15%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEA 246
            Q  A +   +L   L         +L+L CG G  +   A      V  ++I   +++ 
Sbjct: 26  YQTPAPVAARLLYHALMQGDLEDRSILDLGCGTGVLTCGAAMMGAVSVTGIDIDARAIQV 85

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RS 302
           A  N     ++    +     + T  +                  F T+ ++PP    + 
Sbjct: 86  AEANARRCGIS-ATFITGDVSDQTLPLDGP---------------FDTVIMNPPFGAQKK 129

Query: 303 GLDDATVGMVQAYPHILY 320
             D   +        ++Y
Sbjct: 130 HADRPFIDRALLAGKVVY 147


>gi|255657532|ref|ZP_05402941.1| hypothetical protein CdifQCD-2_17941 [Clostridium difficile
           QCD-23m63]
 gi|296452796|ref|ZP_06894483.1| SAM dependent methyltransferase [Clostridium difficile NAP08]
 gi|296879952|ref|ZP_06903924.1| SAM dependent methyltransferase [Clostridium difficile NAP07]
 gi|296258344|gb|EFH05252.1| SAM dependent methyltransferase [Clostridium difficile NAP08]
 gi|296429066|gb|EFH14941.1| SAM dependent methyltransferase [Clostridium difficile NAP07]
          Length = 290

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNGNF 223
           E+ T+  + L +      F           +   M+E +  A + I+  +L L+   G  
Sbjct: 73  EQWTINYKNLKFHIKPTGFKHTGLFPEQAANWDWMIEKIKKANRPIK--VLNLFAYTGGA 130

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNR 281
           ++  A     V  V+ AK  V  A+ NI  + + N  V+ +     +F      ERE  R
Sbjct: 131 TVACASAGAEVCHVDAAKGMVNWAKENIELSGLKNQTVRFIVDDVVKFV-----EREIRR 185

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA 307
                    ++  I +DPP  G    
Sbjct: 186 -------GKKYDAIIMDPPSYGRGPK 204


>gi|306521861|ref|ZP_07408208.1| hypothetical protein CdifQ_20656 [Clostridium difficile QCD-32g58]
          Length = 296

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNGNF 223
           E+ T+  + L +      F           +   M+E +  A + I+  +L L+   G  
Sbjct: 73  EQWTINYKNLKFHIKPTGFKHTGLFPEQAANWDWMIEKIKKANRPIK--VLNLFAYTGGA 130

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNR 281
           ++  A     V  V+ AK  V  A+ NI  + + N  V+ +     +F      ERE  R
Sbjct: 131 TVACASAGAEVCHVDAAKGMVNWAKENIELSGLKNQTVRFIVDDVVKFV-----EREIRR 185

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA 307
                    ++  I +DPP  G    
Sbjct: 186 -------GKKYDAIIMDPPSYGRGPK 204


>gi|126701208|ref|YP_001090105.1| hypothetical protein CD3581 [Clostridium difficile 630]
 gi|254977208|ref|ZP_05273680.1| hypothetical protein CdifQC_17928 [Clostridium difficile QCD-66c26]
 gi|255094536|ref|ZP_05324014.1| hypothetical protein CdifC_18051 [Clostridium difficile CIP 107932]
 gi|255102794|ref|ZP_05331771.1| hypothetical protein CdifQCD-6_18426 [Clostridium difficile
           QCD-63q42]
 gi|255308615|ref|ZP_05352786.1| hypothetical protein CdifA_18636 [Clostridium difficile ATCC 43255]
 gi|255316289|ref|ZP_05357872.1| hypothetical protein CdifQCD-7_18124 [Clostridium difficile
           QCD-76w55]
 gi|255518950|ref|ZP_05386626.1| hypothetical protein CdifQCD-_17663 [Clostridium difficile
           QCD-97b34]
 gi|255652129|ref|ZP_05399031.1| hypothetical protein CdifQCD_18225 [Clostridium difficile
           QCD-37x79]
 gi|260685102|ref|YP_003216387.1| hypothetical protein CD196_3373 [Clostridium difficile CD196]
 gi|260688760|ref|YP_003219894.1| hypothetical protein CDR20291_3419 [Clostridium difficile R20291]
 gi|115252645|emb|CAJ70488.1| conserved hypothetical protein [Clostridium difficile]
 gi|260211265|emb|CBA66813.1| conserved hypothetical protein [Clostridium difficile CD196]
 gi|260214777|emb|CBE07492.1| conserved hypothetical protein [Clostridium difficile R20291]
          Length = 290

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNGNF 223
           E+ T+  + L +      F           +   M+E +  A + I+  +L L+   G  
Sbjct: 73  EQWTINYKNLKFHIKPTGFKHTGLFPEQAANWDWMIEKIKKANRPIK--VLNLFAYTGGA 130

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNR 281
           ++  A     V  V+ AK  V  A+ NI  + + N  V+ +     +F      ERE  R
Sbjct: 131 TVACASAGAEVCHVDAAKGMVNWAKENIELSGLKNQTVRFIVDDVVKFV-----EREIRR 185

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA 307
                    ++  I +DPP  G    
Sbjct: 186 -------GKKYDAIIMDPPSYGRGPK 204


>gi|120553745|ref|YP_958096.1| hypothetical protein Maqu_0812 [Marinobacter aquaeolei VT8]
 gi|120323594|gb|ABM17909.1| SAM-dependent methyltransferase [Marinobacter aquaeolei VT8]
          Length = 398

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 75/232 (32%), Gaps = 35/232 (15%)

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH- 143
              + +   +  +P  R      D L+         ++  ++      +    +  A+  
Sbjct: 88  EAALSLRERLFDKPFYRWVFGDSDGLSGLVVDRFDDVVVVQISTAGMEQMKEAIVRAVQR 147

Query: 144 -ARKYQIQLIGRANKTKICLDRDYVD-------ERLTVAGRTLIYRQI-ENS-----FTQ 189
            A    I L       K+     YV+       + + V      +            F  
Sbjct: 148 LAHARIIVLKNDGKMRKVEGLDTYVEFAHGPEADTVLVEENGARFEVPLAGGQKTGWFY- 206

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAAR 248
            +  +N   L+            +L+++   G + +  A     +V  V+ +  +V+A  
Sbjct: 207 -DHRMNRQRLQA-----YAPGKKVLDVFSYVGGWGIQAACAGASQVTCVDASSAAVDAVH 260

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +N   N + NV  +   + +  +A+  E+E            +F  + +DPP
Sbjct: 261 HNAKLNGLENVDTIEGDAFDALKALADEKE------------KFDIVVLDPP 300


>gi|262166265|ref|ZP_06034002.1| Polypeptide chain release factor methylase [Vibrio mimicus VM223]
 gi|262025981|gb|EEY44649.1| Polypeptide chain release factor methylase [Vibrio mimicus VM223]
          Length = 286

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I+G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALEKAALIEGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      RV  +++   + E A+ N     + N + ++ S            
Sbjct: 124 TGAIALALASELPLRRVTGIDLRPEAAELAQENATRLSILNTQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|229817998|ref|ZP_04448280.1| hypothetical protein BIFANG_03285 [Bifidobacterium angulatum DSM
           20098]
 gi|229784602|gb|EEP20716.1| hypothetical protein BIFANG_03285 [Bifidobacterium angulatum DSM
           20098]
          Length = 211

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A      G+LL+L CG G  +L LA       V A+++ + ++E    N   N   NV+ 
Sbjct: 53  APEPPEHGNLLDLGCGWGPIALSLAMASPEANVWALDVNERALELTALNAKRNGCGNVRT 112

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
           VR  +                 D       F  I+ +PP R G +     ++   P +
Sbjct: 113 VRTDADAL----------PVEPDAISPDLTFDAIWSNPPIRIGKEALHTLLMNWLPRL 160


>gi|237810384|ref|YP_002894835.1| PUA domain protein [Burkholderia pseudomallei MSHR346]
 gi|237504214|gb|ACQ96532.1| PUA domain protein [Burkholderia pseudomallei MSHR346]
          Length = 425

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 241 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 300

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 301 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 350


>gi|76811457|ref|YP_331804.1| SAM-dependent methyltransferase [Burkholderia pseudomallei 1710b]
 gi|226199854|ref|ZP_03795405.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
           9]
 gi|254188138|ref|ZP_04894650.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261767|ref|ZP_04952821.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
 gi|76580910|gb|ABA50385.1| predicted SAM-dependent methyltransferases [Burkholderia
           pseudomallei 1710b]
 gi|157935818|gb|EDO91488.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|225928205|gb|EEH24241.1| conserved hypothetical protein [Burkholderia pseudomallei Pakistan
           9]
 gi|254220456|gb|EET09840.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
          Length = 425

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 241 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 300

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 301 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 350


>gi|134283577|ref|ZP_01770276.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|134244986|gb|EBA45081.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
          Length = 425

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 241 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 300

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 301 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 350


>gi|262170843|ref|ZP_06038521.1| Polypeptide chain release factor methylase [Vibrio mimicus MB-451]
 gi|261891919|gb|EEY37905.1| Polypeptide chain release factor methylase [Vibrio mimicus MB-451]
          Length = 286

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I+G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALEKAALIEGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      RV  +++   + E A+ N     + N + ++ S            
Sbjct: 124 TGAIALALASELPLRRVTGIDLRPEAAELAQENATRLSILNTQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|242398027|ref|YP_002993451.1| N5-glutamine methyltransferase, HemK family [Thermococcus sibiricus
           MM 739]
 gi|242264420|gb|ACS89102.1| N5-glutamine methyltransferase, HemK family [Thermococcus sibiricus
           MM 739]
          Length = 199

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR 229
           L +     +Y   E++F              +        GD  L++  G G  +L++A+
Sbjct: 7   LKIKLHPHVYEPAEDTFL-------------LAENLMIKDGDFALDMGTGTGIIALLMAK 53

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
               VL V++   +VE A+ N   N + NVK  +  
Sbjct: 54  KAKFVLGVDVNPIAVELAKENARLNGITNVKFKQSD 89


>gi|87307314|ref|ZP_01089459.1| hypothetical protein DSM3645_17365 [Blastopirellula marina DSM
           3645]
 gi|87290054|gb|EAQ81943.1| hypothetical protein DSM3645_17365 [Blastopirellula marina DSM
           3645]
          Length = 389

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNN 258
            V AA       +L+++C  G F+L  A+      V+ ++ +  +++ AR N   N ++N
Sbjct: 206 RVAAAKYFSGRRVLDMFCYTGGFALAAAKLGGASEVIGIDGSDKAIDLARRNAERNGLSN 265

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           V+   + +            F+ LK +     +F  + +DPP+ 
Sbjct: 266 VRFESVDA------------FDHLKALVDAGEKFDAVILDPPKF 297


>gi|294635784|ref|ZP_06714244.1| protein-(glutamine-N5) methyltransferase [Edwardsiella tarda ATCC
           23685]
 gi|291090884|gb|EFE23445.1| protein-(glutamine-N5) methyltransferase [Edwardsiella tarda ATCC
           23685]
          Length = 278

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +++L  G G  +L LA  R   RV AVE    +V  AR N     
Sbjct: 99  LVEQALQRLPARPAQIVDLGTGTGAIALALASERPDCRVSAVEFNPEAVALARRNAERLG 158

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           +  V+I++ S                     +   RF  I  +PP    DDA + +
Sbjct: 159 LARVEILQGS-----------------WFAPLAGRRFDMIVANPPYIDADDAHLSL 197


>gi|163803584|ref|ZP_02197451.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Vibrio sp. AND4]
 gi|159172626|gb|EDP57483.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Vibrio sp. AND4]
          Length = 285

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 29/172 (16%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W E A+ +           + I       I  +R++    L V+  TLI R         
Sbjct: 48  WPEKALEIEQQAQFDDLLARRIAGEPVAYIIGEREFWSLPLKVSPSTLIPRPD------- 100

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAAR 248
                  ++E  L  T    G +L+L  G G  +L LA      +V+ V++ + + + A 
Sbjct: 101 ----TERLVEIALDKTYAQTGPILDLGTGTGAIALALASEMPKRQVMGVDLKQEAKDLAH 156

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           YN +  ++ NV   +                    +      +F  I  +PP
Sbjct: 157 YNASQLNIKNVTFAQG----------------CWFEPITSGTKFALIVSNPP 192


>gi|212224934|ref|YP_002308170.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
 gi|212009891|gb|ACJ17273.1| Hypothetical tRNA/rRNA methyltransferase [Thermococcus onnurineus
           NA1]
          Length = 396

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 14/111 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH-VNNV 259
            L         +L+++   G F++  A    ++V+AV+ +  ++E A+ N   N   + +
Sbjct: 210 ALEKYVKPGMKVLDVFTYTGGFAIHAAVAGAEKVVAVDKSPRAIEMAKENAKLNGVADRM 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           + +  S+            F  ++++     +F  + +DPP     +  + 
Sbjct: 270 EFIVGSA------------FPVMEEMIKRGEKFDIVILDPPAFVQHEKDLK 308


>gi|289192084|ref|YP_003458025.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
 gi|288938534|gb|ADC69289.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
          Length = 385

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           +         +L++ C  G FS+  A     V+ V+++K +++ A  N+  N++  +  +
Sbjct: 206 IEKFIKEGDRVLDICCYTGGFSVHAAIRGAEVVGVDLSKKALKLAEENMELNNIPKDKYE 265

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +  S+            F  +++      RF  + +DPP        + 
Sbjct: 266 FIEGSA------------FKVMEEFIEDGERFDVVILDPPAFAQSKKALK 303


>gi|126439215|ref|YP_001057247.1| hypothetical protein BURPS668_0194 [Burkholderia pseudomallei 668]
 gi|126218708|gb|ABN82214.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
          Length = 422

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 238 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 297

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 298 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 347


>gi|256811406|ref|YP_003128775.1| methyltransferase small [Methanocaldococcus fervens AG86]
 gi|256794606|gb|ACV25275.1| methyltransferase small [Methanocaldococcus fervens AG86]
          Length = 196

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 15/112 (13%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
               D+L+L CG G   + LA     V   +I + +++ A+ NI  N++ N   +R+   
Sbjct: 54  NEDEDILDLGCGYGVIGIALADEVKSVTMADINRRAIKLAKENIKLNNLENYD-IRVVHS 112

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +  +              ++   ++  I  +PP     +    +++    IL
Sbjct: 113 DLYE--------------NVKDKKYDKIITNPPIRAGKEVLHKIIKEGKEIL 150


>gi|167579400|ref|ZP_02372274.1| hypothetical protein BthaT_14729 [Burkholderia thailandensis TXDOH]
          Length = 423

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 239 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 298

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 299 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 348


>gi|154249281|ref|YP_001410106.1| PUA domain-containing protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153217|gb|ABS60449.1| PUA domain containing protein [Fervidobacterium nodosum Rt17-B1]
          Length = 394

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 64/188 (34%), Gaps = 30/188 (15%)

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY-----RQIENSFT-QPNAGINV 196
                 ++  G   KT+         E +      L +      Q   +F  Q     N 
Sbjct: 153 RTEGSAVKKEGLEEKTEWIYGN--GPELIPFEINGLKFLADTKGQKTGAFLDQ---RENA 207

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANH 255
             L            + L+ +   GNF + L +     V  V+ ++ +++ A+     N+
Sbjct: 208 KKL-----MEFAEGKECLDCFSYTGNFGMHLLKGGAKHVTFVDYSERAIDVAKEIAKLNN 262

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QA 314
             N K +  ++ +F            LK+   +S+ +  + +DPP      ++     + 
Sbjct: 263 FQNCKFIVANAFDF------------LKEEFENSHLYDIVVLDPPSFAKSASSRDAAFKG 310

Query: 315 YPHILYIS 322
           Y  I Y S
Sbjct: 311 YKEINYRS 318


>gi|59711376|ref|YP_204152.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Vibrio fischeri ES114]
 gi|59479477|gb|AAW85264.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Vibrio fischeri ES114]
          Length = 284

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I   R++    L V+  TLI R                ++E  L         +L+L  G
Sbjct: 75  IVGYREFWSLPLKVSPTTLIPRPD-----------TERLVEVALDHLTPNAQSILDLGTG 123

Query: 220 NGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L +A       V+ V+    +VE A+ N   NH+NNV+  + S            
Sbjct: 124 TGAIALAIASEMPTLNVIGVDYQDDAVELAKGNAKINHINNVEFRQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                 +    S +F  I  +PP
Sbjct: 172 ----WFEPISLSDKFDIIVSNPP 190


>gi|41408559|ref|NP_961395.1| hypothetical protein MAP2461c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396917|gb|AAS04778.1| HemK [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 300

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 35/181 (19%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
           LL+   +E   R RDA+ AR  ++ L       +  L         T A   ++      
Sbjct: 53  LLEPPGQEFFQRYRDAVSARARRVPL-------QHLLG--------TAAFGPVLLHVGPG 97

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF------DRVLAVEI 239
            F          +LEW  A     +  +++L  G+G  ++ LA H        R++ V+ 
Sbjct: 98  VF--VPRPETEALLEWATAQQLPPRPVIVDLCTGSGALAVALAHHCAGRGLPARIVGVDN 155

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  ++E AR N A      V++VR    E  +      + +          R   +  +P
Sbjct: 156 SDAALEYARRNAAG---TTVELVRADVIELARVPGSAPDLD---------GRVDLVVANP 203

Query: 300 P 300
           P
Sbjct: 204 P 204


>gi|21219512|ref|NP_625291.1| methyltransferase [Streptomyces coelicolor A3(2)]
 gi|11071204|emb|CAC14363.1| putative methyltransferase [Streptomyces coelicolor A3(2)]
          Length = 249

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 1/95 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +L+     +      +L+L CG G F++ LAR    V  V+++   +E AR   
Sbjct: 26  HAQAEELLDTSPLLSIPAGARVLDLCCGPGVFTVPLARRGYDVTGVDLSPAMLERARKRA 85

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           A      V  V+  ++ +      +   N      
Sbjct: 86  ADAGAQ-VTYVQADARAYEPPGAFDVVLNMFTSFG 119


>gi|218295004|ref|ZP_03495840.1| conserved hypothetical protein [Thermus aquaticus Y51MC23]
 gi|218244207|gb|EED10732.1| conserved hypothetical protein [Thermus aquaticus Y51MC23]
          Length = 381

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+++   G F+L LA  F  V+AV+ +K ++  A  N   N +  +K V  ++ ++ +
Sbjct: 212 RALDVFSYAGGFALHLALGFKEVVAVDSSKEALARAEENARLNGLA-LKTVEANAFDYLR 270

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           A+ R  E            RF  I +DPP        + 
Sbjct: 271 ALERAGE------------RFDLIVLDPPAFAKGKKDLE 297


>gi|168181643|ref|ZP_02616307.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Bf]
 gi|237796410|ref|YP_002863962.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Ba4
           str. 657]
 gi|259534499|sp|C3L3G5|PRMA_CLOB6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|182675116|gb|EDT87077.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Bf]
 gi|229261819|gb|ACQ52852.1| ribosomal protein L11 methyltransferase [Clostridium botulinum Ba4
           str. 657]
          Length = 312

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 68/191 (35%), Gaps = 17/191 (8%)

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             ++  +  +D       + +V +  H++ ++ W     +            +    +NK
Sbjct: 81  DYIKKSVSNLDQFGIDKGKGLVEV--HKVNEEDWENNWKK----------YYKPTKVSNK 128

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             I      + E        +I                  M    L         + ++ 
Sbjct: 129 IVI----KPIWENYDKKQEEIIVELDPGMAFGTGTHETTRMCINALEKHIKEDRTVFDIG 184

Query: 218 CGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           CG+G  S+  A+     V+ V++   +V++++ NI  N+++N++I+  +  E  +     
Sbjct: 185 CGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGNLMEVVEGRANI 244

Query: 277 REFNRLKDIDI 287
              N + D+ I
Sbjct: 245 VVANIIADVII 255


>gi|332158532|ref|YP_004423811.1| hypothetical protein PNA2_0891 [Pyrococcus sp. NA2]
 gi|331033995|gb|AEC51807.1| hypothetical protein PNA2_0891 [Pyrococcus sp. NA2]
          Length = 396

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
            L         +L+++   G F++  A    + V+ ++ +  ++E A+ N   N V + V
Sbjct: 210 ALEKWVRPGDRVLDVFTYTGGFAIHAAIAGAEEVIGIDKSPKAIETAKENAKLNGVEDRV 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             +  ++            F  ++ +     +F  + +DPP     +  +  
Sbjct: 270 NFMVGNA------------FEEMEKLQKRGEKFDIVILDPPAFVQHEKDLKA 309


>gi|78043572|ref|YP_360269.1| hypothetical protein CHY_1437 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995687|gb|ABB14586.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 390

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 35/151 (23%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+ +C  G FS+  A      V+ V+I+  ++  A+ N   N   +          F
Sbjct: 216 KKVLDCFCHTGAFSVYAAGFGAKEVIGVDISSEAITRAQENAVLNGFQDKIF-------F 268

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYISCNPDSL 328
            +A      F+ L++++ +   F  + +DPP      +A  G ++ Y  I     N    
Sbjct: 269 IEANC----FDYLRELEKNRANFDIVILDPPAFTKSKEALPGAIRGYKEI-----N---- 315

Query: 329 CRDLSILSTT---------HTIERLALFDQF 350
            R L +L+           + +      D F
Sbjct: 316 LRALKLLNEGGILVTSSCSYHLTE----DLF 342


>gi|297582071|ref|ZP_06943990.1| hemK protein [Vibrio cholerae RC385]
 gi|297533766|gb|EFH72608.1| hemK protein [Vibrio cholerae RC385]
          Length = 286

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I G+LL+L  G
Sbjct: 75  ILGEREFWSLSLKVSPSTLIPRPD-----------TERLVELALDKAALIDGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + E AR N     ++N   ++ S            
Sbjct: 124 TGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNALFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L D      +F  I  +PP
Sbjct: 172 WFSPLAD----GTKFALIVSNPP 190


>gi|293609439|ref|ZP_06691741.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827891|gb|EFF86254.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 271

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 19/178 (10%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L A++ Q  L G            +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTAQQEQDYLAGLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSV 244
                      ++E VL        ++++L  G G  +L LA  R   +V A++I  P++
Sbjct: 92  --------TEVLVETVLNLNLPNTANIVDLGTGTGAIALALASERPDWQVTAIDIYAPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           E A+ N  A+ +  VK    +  +  +  + +   +    ID      + +  +P R+
Sbjct: 144 EVAKENAQAHDLQRVKFACGAWFDALEPQKFDLIVSNPPYIDPEDEHMQALATEPRRA 201


>gi|260892856|ref|YP_003238953.1| methyltransferase small [Ammonifex degensii KC4]
 gi|260864997|gb|ACX52103.1| methyltransferase small [Ammonifex degensii KC4]
          Length = 392

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 13/109 (11%)

Query: 212 DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+ +C  G F++  A+   + V+AV++++ ++E AR N   N V           E  
Sbjct: 220 RVLDCFCYTGGFAVAAAKGEAEEVVAVDVSEQALELARENAVLNGV-----------EEK 268

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            + R    F+ L+ ++    +F  + +DPP      +A    ++ Y  I
Sbjct: 269 ISWREANCFDELRRLEKAGEKFDLVILDPPAFTKSKEALPSAMRGYKEI 317


>gi|289177356|gb|ADC84602.1| 16S rRNA m(2)G 1207 methyltransferase [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 255

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 22/119 (18%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    ++G  L+L CG G  +L LA       V AV++ + ++E AR N  AN   N+  
Sbjct: 106 APMPPLEGTFLDLGCGWGAIALALALESPEATVYAVDVNERAIELARSNAEANGCGNIH- 164

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
              ++                  +     RF  I+ +PP R G +     +++  P ++
Sbjct: 165 -AGTAA-----------------VVPGDVRFDVIWSNPPIRIGKEALHELLMEWLPRLV 205


>gi|219683279|ref|YP_002469662.1| 16S RNA G1207 methylase RsmC precursor [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|219620929|gb|ACL29086.1| putative 16S RNA G1207 methylase RsmC precursor [Bifidobacterium
           animalis subsp. lactis AD011]
          Length = 231

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 22/119 (18%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    ++G  L+L CG G  +L LA       V AV++ + ++E AR N  AN   N+  
Sbjct: 82  APMPPLEGTFLDLGCGWGAIALALALESPEATVYAVDVNERAIELARSNAEANGCGNIH- 140

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
              ++                  +     RF  I+ +PP R G +     +++  P ++
Sbjct: 141 -AGTAA-----------------VVPGDVRFDVIWSNPPIRIGKEALHELLMEWLPRLV 181


>gi|315231428|ref|YP_004071864.1| LSU methyltransferase [Thermococcus barophilus MP]
 gi|315184456|gb|ADT84641.1| LSU methyltransferase [Thermococcus barophilus MP]
          Length = 396

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 14/111 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-V 259
            L         +L+++   G F++  A    ++V+A++ +  ++E A+ N   N V + +
Sbjct: 210 ALEKYIRGGEKVLDVFTYTGGFAIHAAVAGAEKVIAIDKSPRAIEQAKENAKLNGVEDKM 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           + +  S+            F  ++ +     +F  + +DPP     +  + 
Sbjct: 270 EFIVGSA------------FPEMEKLQKRGEKFDIVILDPPAFVQHEKDLK 308


>gi|183602406|ref|ZP_02963772.1| hypothetical protein BIFLAC_05155 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191240|ref|YP_002968634.1| hypothetical protein Balac_1216 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196646|ref|YP_002970201.1| hypothetical protein Balat_1216 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218325|gb|EDT88970.1| hypothetical protein BIFLAC_05155 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249632|gb|ACS46572.1| hypothetical protein Balac_1216 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251200|gb|ACS48139.1| hypothetical protein Balat_1216 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794233|gb|ADG33768.1| hypothetical protein BalV_1180 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 209

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 22/119 (18%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    ++G  L+L CG G  +L LA       V AV++ + ++E AR N  AN   N+  
Sbjct: 60  APMPPLEGTFLDLGCGWGAIALALALESPEATVYAVDVNERAIELARSNAEANGCGNIH- 118

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
              ++                  +     RF  I+ +PP R G +     +++  P ++
Sbjct: 119 -AGTAA-----------------VVPGDVRFDVIWSNPPIRIGKEALHELLMEWLPRLV 159


>gi|83719434|ref|YP_440727.1| hypothetical protein BTH_I0169 [Burkholderia thailandensis E264]
 gi|167617500|ref|ZP_02386131.1| hypothetical protein BthaB_14424 [Burkholderia thailandensis Bt4]
 gi|257140624|ref|ZP_05588886.1| hypothetical protein BthaA_15650 [Burkholderia thailandensis E264]
 gi|83653259|gb|ABC37322.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 423

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 239 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 298

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 299 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 348


>gi|17547622|ref|NP_521024.1| methyltransferase [Ralstonia solanacearum GMI1000]
 gi|17429926|emb|CAD16610.1| probable methylase of polypeptide chain release factors protein
           [Ralstonia solanacearum GMI1000]
          Length = 306

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 36/194 (18%)

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDE----------RLTVAGRTLIYRQIENSFT-- 188
           AL AR     + G +    I  D   +D+             +AG  + Y   E  F   
Sbjct: 40  ALEARMLVSHVTGLSRVQLITQDTCGIDDGTRTRLAELATRRLAGEPMAYLLGEREFFGR 99

Query: 189 --QPNAGI------NVHMLEWVLAATKGIQ-GDLLELYCGNGNF--SLVLARHFDRVLAV 237
             Q    +         ++E  L          +L+L  G+G    ++ LAR   RV A 
Sbjct: 100 MFQVTPAVLIPRPDTELLVEQALDRIDDRDAPAVLDLGTGSGIIAVTIALARRDARVWAT 159

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           + +  ++  A  N  A    N+                   +  L + D     F  I  
Sbjct: 160 DTSADALAVAVRNAQALGAANMHAALGD------------WYAALPESDAPP-VFDLIVS 206

Query: 298 DPPRSGLDDATVGM 311
           +PP     DA +G 
Sbjct: 207 NPPYIASTDAHLGQ 220


>gi|167917074|ref|ZP_02504165.1| predicted SAM-dependent methyltransferase [Burkholderia
           pseudomallei BCC215]
          Length = 291

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+A N  +  
Sbjct: 107 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAENGFDAA 166

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 167 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 216


>gi|299065548|emb|CBJ36719.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Ralstonia solanacearum CMR15]
          Length = 306

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 36/194 (18%)

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDE----------RLTVAGRTLIYRQIENSFT-- 188
           AL AR     + G +    I  D   +D+             +AG  + Y   E  F   
Sbjct: 40  ALEARMLVSHVTGLSRVQLITQDTCGIDDGTRTRLAELATRRLAGEPMAYLLGEREFFGR 99

Query: 189 --QPNAGI------NVHMLEWVLAATKGIQ-GDLLELYCGNGNF--SLVLARHFDRVLAV 237
             Q    +         ++E  L          +L+L  G+G    ++ LAR   RV A 
Sbjct: 100 MFQVTPAVLIPRPDTELLVEQALDRIDDRDVPAVLDLGTGSGIIAVTIALARRDARVWAT 159

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           + +  ++  A  N  A    N+                   +  L + D     F  I  
Sbjct: 160 DTSADALAVAVRNAQALGAANMHAALGD------------WYAALPESDAPP-VFDLIVS 206

Query: 298 DPPRSGLDDATVGM 311
           +PP     DA +G 
Sbjct: 207 NPPYIASTDAHLGQ 220


>gi|303256279|ref|ZP_07342295.1| methyltransferase [Burkholderiales bacterium 1_1_47]
 gi|330998975|ref|ZP_08322700.1| 23S rRNA m5C1962 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|302861008|gb|EFL84083.1| methyltransferase [Burkholderiales bacterium 1_1_47]
 gi|329575717|gb|EGG57243.1| 23S rRNA m5C1962 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 408

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 20/186 (10%)

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRD-YVDERLTVAGRTLIYRQIENSFTQPNAGI 194
            R R+ L  RK  ++      + +I  D   Y  +            Q +      N  +
Sbjct: 162 TRAREGLPERKEVLEGEEPPQEVEIVEDGIKYGVDVRMGHKTGFYVDQRD------NRAL 215

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAA 253
              + E       G     L  +C  G FSL L A   + V++++ +  +++ A+ N   
Sbjct: 216 ARRLAEE-FKRVHGRGMRALNCFCYTGGFSLALKAGGAEEVVSIDSSADALQMAQENAKR 274

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMV 312
           N  +          + +        F  L++      +F  + +DPP+            
Sbjct: 275 NGFD----------DGSMKWIEANVFEALREFRDKGEQFDLVILDPPKFASSHHHVDKAA 324

Query: 313 QAYPHI 318
           +AY  I
Sbjct: 325 RAYKDI 330


>gi|260772291|ref|ZP_05881207.1| Polypeptide chain release factor methylase [Vibrio metschnikovii
           CIP 69.14]
 gi|260611430|gb|EEX36633.1| Polypeptide chain release factor methylase [Vibrio metschnikovii
           CIP 69.14]
          Length = 280

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 24/186 (12%)

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
           L+     +++ +    P L A L     L  +    ++T    RL  DA     + L   
Sbjct: 6   LLAKAKRQLIESGSDSPSLDAALLLCHVL-QKPRSYLLTWPDKRLDADAISAFEVLLARR 64

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           +                 I  +R++    L VA  TLI R                ++E 
Sbjct: 65  IAGEPIAY----------IIGEREFWSLPLKVAPSTLIPRPD-----------TERLVEL 103

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
            L     I GD+L+L  G G  +L LA       VL +++   +VE A  N     ++NV
Sbjct: 104 ALDKAVLIDGDILDLGTGTGAIALALASELPQRHVLGIDLRSEAVELAEDNRKRLQLSNV 163

Query: 260 KIVRMS 265
             ++ S
Sbjct: 164 TFLQGS 169


>gi|53724456|ref|YP_104731.1| hypothetical protein BMA3257 [Burkholderia mallei ATCC 23344]
 gi|67639319|ref|ZP_00438189.1| PUA domain protein [Burkholderia mallei GB8 horse 4]
 gi|121601217|ref|YP_994213.1| hypothetical protein BMASAVP1_A2919 [Burkholderia mallei SAVP1]
 gi|124385751|ref|YP_001028134.1| hypothetical protein BMA10229_A2170 [Burkholderia mallei NCTC
           10229]
 gi|126449249|ref|YP_001082945.1| hypothetical protein BMA10247_3429 [Burkholderia mallei NCTC 10247]
 gi|167003304|ref|ZP_02269092.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
 gi|254175173|ref|ZP_04881834.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|254201830|ref|ZP_04908194.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|254207160|ref|ZP_04913511.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|254359666|ref|ZP_04975937.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|52427879|gb|AAU48472.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|121230027|gb|ABM52545.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|124293771|gb|ABN03040.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
 gi|126242119|gb|ABO05212.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
 gi|147747724|gb|EDK54800.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|147752702|gb|EDK59768.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|148028880|gb|EDK86812.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|160696218|gb|EDP86188.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|238519855|gb|EEP83321.1| PUA domain protein [Burkholderia mallei GB8 horse 4]
 gi|243061114|gb|EES43300.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
          Length = 425

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 241 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 300

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F       +   RL D      RF  I +DPP+  
Sbjct: 301 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFA 334


>gi|195440939|ref|XP_002068292.1| GK19130 [Drosophila willistoni]
 gi|194164377|gb|EDW79278.1| GK19130 [Drosophila willistoni]
          Length = 449

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 78/209 (37%), Gaps = 20/209 (9%)

Query: 90  MMATIRLEPLLRAKL-FQIDYLTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKY 147
           +        +L++ L  + + LTS S    +  +  R  L          L D L   + 
Sbjct: 114 VYDNWTANEILKSILPLEEEGLTSYSRIGHIVHLNLRDHLLPFKSIIGQILLDKLPNCRS 173

Query: 148 QIQLIGRANKT------KICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHML 199
            +      + T      ++   +D  D ++      + +   E  F+Q   N  ++    
Sbjct: 174 VVNKASTIDNTYRNFQMELICGQD--DYQVETKENGIPF---EFDFSQVYWNPRLST--- 225

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           E          GD+L +++ G G FS+  A+   +V+A ++   S +  ++N   N  +N
Sbjct: 226 EHERIVKLLQPGDVLYDVFAGVGPFSVPAAKKRCQVMANDLNPHSFQWLQHNAKRNKCLN 285

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDID 286
           N+++     +EF     +     R    D
Sbjct: 286 NIQMFNKDGREFILKDLQRDLLERWHKSD 314


>gi|53717849|ref|YP_106835.1| hypothetical protein BPSL0207 [Burkholderia pseudomallei K96243]
 gi|52208263|emb|CAH34194.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
          Length = 425

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 241 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 300

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F       +   RL D      RF  I +DPP+  
Sbjct: 301 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFA 334


>gi|150015720|ref|YP_001307974.1| ribosomal protein L11 methyltransferase [Clostridium beijerinckii
           NCIMB 8052]
 gi|189037693|sp|A6LRN8|PRMA_CLOB8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|149902185|gb|ABR33018.1| ribosomal protein L11 methyltransferase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 314

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 3/150 (2%)

Query: 139 RDALHARKYQIQLIGRANKTKIC--LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
              +H   +           KI   +    + E        LI                 
Sbjct: 105 AKKMHEEDWANNWKQYYKPVKITDKIVVKPIWEEYEKNDEELIIELDPGMAFGTGTHETT 164

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
            M    L         + ++ CG+G  ++  A+     V+ V++   +V++++ NI+ N+
Sbjct: 165 RMCIQALDKYVKPDTTVFDVGCGSGILAIAAAKLGAKHVVGVDLDPVAVDSSKENISFNN 224

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           +NN++++  +  +           N + +I
Sbjct: 225 LNNIEVLEGNLLDVVDGKADIVVANIIAEI 254


>gi|126454780|ref|YP_001064489.1| hypothetical protein BURPS1106A_0206 [Burkholderia pseudomallei
           1106a]
 gi|242317774|ref|ZP_04816790.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
 gi|254196923|ref|ZP_04903347.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|126228422|gb|ABN91962.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a]
 gi|169653666|gb|EDS86359.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|242141013|gb|EES27415.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
          Length = 425

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 241 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 300

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F       +   RL D      RF  I +DPP+  
Sbjct: 301 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFA 334


>gi|254509163|ref|ZP_05121262.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio parahaemolyticus 16]
 gi|219547914|gb|EED24940.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio parahaemolyticus 16]
          Length = 286

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L VA  TLI R                ++E  L      +GD+L+L  G
Sbjct: 77  IVGEREFWSLPLDVAPSTLIPRPD-----------TERLVEIALDKASDSEGDILDLGTG 125

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      RV  V++ + + + A  N    ++ N +    S            
Sbjct: 126 TGAIALALASELPNRRVWGVDLKEDARQLASSNAKKLNIPNCEFRSGS------------ 173

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                 D      +F  I  +PP
Sbjct: 174 ----WFDPIESGTQFALIVSNPP 192


>gi|124028185|ref|YP_001013505.1| methyltransferase [Hyperthermus butylicus DSM 5456]
 gi|123978879|gb|ABM81160.1| predicted Methyltransferase [Hyperthermus butylicus DSM 5456]
          Length = 198

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 30/168 (17%)

Query: 153 GRANKTKICLDRDYVDE-RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
            R+ K    L  DY+    +     T ++   E             ++E  +      +G
Sbjct: 8   PRSRKGPRMLVSDYLRGVTVEFYVSTEVFSPREVD------EGTRLLIEHAI---VPEEG 58

Query: 212 DLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
            +L++ CG G   + LA+   R  V+ V++   +VE AR N   N V N V++++    E
Sbjct: 59  TVLDMGCGYGAIGITLAKAHPRLHVVMVDVNPKAVELARLNARHNGVENRVEVLQGDLYE 118

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                             +  Y F  I  +PP +        ++   P
Sbjct: 119 -----------------PVKGYHFDAIISNPPLAAGMKIIEKLILEAP 149


>gi|213025876|ref|ZP_03340323.1| tRNA (uracil-5-)-methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 64

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/64 (57%), Positives = 47/64 (73%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
           MA +R    LR KLFQIDYLT+ S+QA+V+L+YH+ LD+ WRE A  LRDAL A+   + 
Sbjct: 1   MAGVRDNHALRHKLFQIDYLTTLSNQAVVSLLYHKKLDEEWREAATALRDALRAQGLNVH 60

Query: 151 LIGR 154
           LIGR
Sbjct: 61  LIGR 64


>gi|254182209|ref|ZP_04888806.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|184212747|gb|EDU09790.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
          Length = 425

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 241 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQRNVAANGFDAA 300

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F       +   RL D      RF  I +DPP+  
Sbjct: 301 RAQWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFA 334


>gi|317125286|ref|YP_004099398.1| 16S rRNA m(2)G 1207 methyltransferase [Intrasporangium calvum DSM
           43043]
 gi|315589374|gb|ADU48671.1| 16S rRNA m(2)G 1207 methyltransferase [Intrasporangium calvum DSM
           43043]
          Length = 204

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 23/117 (19%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             A      G LL+L CG G  SL LAR     RV  V++ + +++ A  N  A  V+NV
Sbjct: 54  AGAPDPSPTGHLLDLGCGWGPISLTLARRSPAARVWGVDVNRRALQLAALNAEAAGVDNV 113

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHS-YRFKTIFVDPPRSGLDDATVGMVQAY 315
                                  +  D+    RF TI+ +PP      A   +++ +
Sbjct: 114 TF--------------------CEPADVPGDLRFDTIWSNPPIHVGKSALHALLERW 150


>gi|269216929|ref|ZP_06160783.1| methyltransferase domain protein [Slackia exigua ATCC 700122]
 gi|269129736|gb|EEZ60820.1| methyltransferase domain protein [Slackia exigua ATCC 700122]
          Length = 279

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 16/106 (15%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG+G + L LA     V+ ++I+   +EAAR    A  V NV+ V+   ++   
Sbjct: 68  RVLDIGCGSGIYGLALASRVGEVVGIDISPKMIEAAREKACALDVRNVRFVQSDFRDMA- 126

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                  F+   D+              P  G  +A + M+     
Sbjct: 127 -------FDEGFDL--------VFAHMTPAIGDAEAFLKMMSLAKR 157


>gi|325525692|gb|EGD03451.1| PUA domain-containing protein [Burkholderia sp. TJI49]
          Length = 401

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 217 RALVAQYAADRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQQNVAANGFDAA 276

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 277 RASWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 326


>gi|323706445|ref|ZP_08118007.1| hypothetical protein CHP00095 [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534230|gb|EGB24019.1| hypothetical protein CHP00095 [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 391

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
                      D+L+ +   G+FS+  L      V  V+I++ +++ A+ N A N  ++ 
Sbjct: 208 RAAIKKYVKDADVLDCFSHTGSFSVHALHYGAKSVETVDISEAALDMAKKNAALNGYLDR 267

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH 317
            +    ++            F+ LK  D  + +F  + +DPP      +     ++ Y  
Sbjct: 268 CRFTCENA------------FDLLKKYDEENKKFDVVILDPPAFTKSKETVKDAIRGYKE 315

Query: 318 I 318
           I
Sbjct: 316 I 316


>gi|291546996|emb|CBL20104.1| SAM-dependent methyltransferase [Ruminococcus sp. SR1/5]
          Length = 400

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 25/200 (12%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI-- 183
            L +   E  IR+R        +++       TK  +  ++    + +    + Y     
Sbjct: 141 ALKEVLAEDGIRIRGVYERSDAKVRRQEGMELTKGFIGEEFPT-LVQIEENGVKYEVDIR 199

Query: 184 ---ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEI 239
              +  F              +          +L+ +   G+F+L         VL V+ 
Sbjct: 200 DGQKTGFF------LDQKYNRLAIQKLCKGAKVLDCFTHTGSFALNAGIAGAQSVLGVDA 253

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           ++ +V  AR N + N ++            T     E  F  L +++    +F  + +DP
Sbjct: 254 SETAVLQARRNASLNGLDG-----------TVKFLCEDVFELLPELEEKGEKFDVVVLDP 302

Query: 300 PRSGLD-DATVGMVQAYPHI 318
           P       +    ++ Y  I
Sbjct: 303 PAFTKSRSSVKNAIKGYREI 322


>gi|304415272|ref|ZP_07395968.1| N5-glutamine methyltransferase [Candidatus Regiella insecticola
           LSR1]
 gi|304282878|gb|EFL91345.1| N5-glutamine methyltransferase [Candidatus Regiella insecticola
           LSR1]
          Length = 273

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 22/157 (14%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           +  +R++    LTV+  +LI R                ++E  L         +L+L  G
Sbjct: 72  LVGEREFWSLPLTVSSASLIPRPD-----------TESLVEQALVCLPADACRILDLGSG 120

Query: 220 NGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM---SSKEFTQAMR 274
           +G  +L LA  R    V+ ++I   +V  AR+N     +NN++ V+    +   FT+   
Sbjct: 121 SGAIALALASERPDCLVIGIDINADAVTLARHNALKLAINNLRFVQGNWFNINAFTKQGV 180

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               F+ L         F+ I  +PP    DD  + M
Sbjct: 181 ERDHFSSLMA------GFRLIVSNPPYIASDDPHLKM 211


>gi|328717362|ref|XP_003246183.1| PREDICTED: hypothetical protein LOC100573105 [Acyrthosiphon pisum]
          Length = 592

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 58/175 (33%), Gaps = 8/175 (4%)

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
            H  L  +  E      +A+           RA+ TK  L        L       I   
Sbjct: 136 NHHPLPVSRIEEPSPAAEAVTTANDAPLPAARADTTKKTLKYWGKRYTLFSKFDDGILM- 194

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
            E SF       +  +M E       G     ++ +CG G   + LAR FD+V+AV+I  
Sbjct: 195 DEESFYSVCPEKLCAYMAEQ-----CGRVKVAVDPFCGAGGNVIHLARRFDKVIAVDIDA 249

Query: 242 PSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
             +  A+ N A   V + ++ +     +    ++ +              +   I
Sbjct: 250 DKIIMAKQNAAIYGVGDKIEFIVGDYFKLENQIKGDVIVTSPPWGGPEYSKMDVI 304


>gi|307544473|ref|YP_003896952.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Halomonas elongata DSM 2581]
 gi|307216497|emb|CBV41767.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Halomonas elongata DSM 2581]
          Length = 282

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 19/119 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++   L+      G LL+L  G+G  +L LA  R     L +++   +V  AR N  
Sbjct: 97  TETLVAAALSRMPARAGRLLDLGTGSGAVALALASERPDWYALGIDLNPGAVALARRNAE 156

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
              + NV                   F  L + D     F  I  +PP    DD  + +
Sbjct: 157 RLGIANVGFRVGD------------WFAALDESD-----FDVIVANPPYLADDDPHLEL 198


>gi|206901995|ref|YP_002249964.1| methyltransferase [Dictyoglomus thermophilum H-6-12]
 gi|206741098|gb|ACI20156.1| methyltransferase [Dictyoglomus thermophilum H-6-12]
          Length = 395

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 15/111 (13%)

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKE 268
            ++L+++C  G FSL  L     +V+AV+ +  ++E A+ N   N  ++ ++ +  ++ +
Sbjct: 219 AEVLDVFCYTGGFSLHALKYGASKVIAVDSSSTALEMAKENAKINGFIDKIEFIEENAFD 278

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
             +   +E               F  + +DPP          G ++ Y  I
Sbjct: 279 LLRRFHKE------------GKTFDVVILDPPAFAKSSKNLDGALRGYKEI 317


>gi|312135034|ref|YP_004002372.1| ribosomal L11 methyltransferase [Caldicellulosiruptor owensensis
           OL]
 gi|311775085|gb|ADQ04572.1| ribosomal L11 methyltransferase [Caldicellulosiruptor owensensis
           OL]
          Length = 389

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            V          +L+ +C  G F++  A+    +V+ V+I+  ++E A  N   N V + 
Sbjct: 206 RVAIRNFVKDKVVLDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNGVESK 265

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAY 315
            + V  +  ++   +  ++E   +  +D+ ++      ++  + G  +     + +++  
Sbjct: 266 CEFVVANVFDYLNELDDKKEKYDMIILDLPAFAKSIHTLENAKRGYKEINLRAMKILKKG 325

Query: 316 PHILYISC 323
             ++  SC
Sbjct: 326 GILVTCSC 333


>gi|270156936|ref|ZP_06185593.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|289164637|ref|YP_003454775.1| hypothetical protein LLO_1296 [Legionella longbeachae NSW150]
 gi|269988961|gb|EEZ95215.1| conserved hypothetical protein [Legionella longbeachae D-4968]
 gi|288857810|emb|CBJ11656.1| putative unknown protein [Legionella longbeachae NSW150]
          Length = 390

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 45/117 (38%), Gaps = 17/117 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A      ++L+LY   G F+L  A+    +V AV+ +  ++   R N   N +  ++ + 
Sbjct: 216 AQLSQGKNVLDLYSYTGGFALHAAKAGALKVTAVDSSAQAIAQGRKNALLNQLTQIEFIE 275

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
             S+++                   +  +  I +DPP+       +   + Y   L+
Sbjct: 276 ADSRDYLT----------------KAGEYDVIILDPPKLVPSQQHLQRAKNYYRFLH 316


>gi|254172001|ref|ZP_04878677.1| methylase, putative [Thermococcus sp. AM4]
 gi|214033897|gb|EEB74723.1| methylase, putative [Thermococcus sp. AM4]
          Length = 193

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L++  G G  +L++AR    VL V++   ++E AR N   N + NVK 
Sbjct: 38  LDIGTGTGIIALLMARKAKHVLGVDVNPKAIELARKNALLNGIENVKF 85


>gi|312127719|ref|YP_003992593.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777738|gb|ADQ07224.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 389

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 82/260 (31%), Gaps = 36/260 (13%)

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           +  E + ID+F             +  T     +     F    +  +    +V     +
Sbjct: 67  RKNEEINIDFFRKRVQDAWDYRKSIGYTQNCRLIFAEADFLPGLIVDKFGDVLVMQTLSK 126

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI---------CLDRDYVDERLTVAGR 176
            +D    +    L   ++ +   I     A   +I               V+  +   G 
Sbjct: 127 GVDKFKDKLVEILVGIVNPK--AIYERNDARVREIEGLDLRKGFLYGSSPVEVEIEENGI 184

Query: 177 TLIYRQIENSFTQPNAGINVHMLEW----VLAATKGIQGDLLELYCGNGNFSLVLAR-HF 231
            +I           N     + L+     V          +L+ +C  G F++  A+   
Sbjct: 185 KMIVDIE-------NGQKTGYFLDQKENRVAIRNFVKDKVVLDCFCHTGGFTINAAKFGA 237

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
            +V+ V+I+  ++E A  N   N V +  + V  +             F+ L ++D    
Sbjct: 238 SKVIGVDISDTAIEQAVKNAKLNGVESKCEFVVANV------------FDYLNELDDKKE 285

Query: 291 RFKTIFVDPPRSGLDDATVG 310
           ++  I +DPP       T+ 
Sbjct: 286 KYDMIILDPPAFAKSIHTLE 305


>gi|312793397|ref|YP_004026320.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180537|gb|ADQ40707.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 389

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 14/112 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            V          +L+ +C  G F++  A+    +V+ V+I+  ++E A  N   N V + 
Sbjct: 206 RVAIRNFVKDKVVLDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNGVESK 265

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            + V  +             F+ L ++D    ++  I +DPP       T+ 
Sbjct: 266 CEFVVANV------------FDYLNELDDKKEKYDMIILDPPAFAKSIHTLE 305


>gi|134101838|ref|YP_001107499.1| putative methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914461|emb|CAM04574.1| putative methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 145

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCG 219
                YV E+L         R                ++E +   T    GD +L++ CG
Sbjct: 10  LAGVPYVPEQLFAQAAPFYARYRPG--------YPAELVELLAERTGLDSGDLVLDVGCG 61

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            G  +L LAR   +V+AV+     ++ AR       V N+   +  +    
Sbjct: 62  TGQLALPLARRVRQVVAVDPQPGMLDHAREAARRAGVGNIDWRQADASALA 112


>gi|312877028|ref|ZP_07737001.1| protein of unknown function Met10 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796169|gb|EFR12525.1| protein of unknown function Met10 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 389

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 14/112 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            V          +L+ +C  G F++  A+    +V+ V+I+  ++E A  N   N V + 
Sbjct: 206 RVAIRNFVKDKVVLDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNGVESK 265

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            + V  +             F+ L ++D    ++  I +DPP       T+ 
Sbjct: 266 CEFVVANV------------FDYLNELDDKKEKYDMIILDPPAFAKSIHTLE 305


>gi|240102561|ref|YP_002958870.1| Methylase, putative, hemK and PrmA related [Thermococcus
           gammatolerans EJ3]
 gi|239910115|gb|ACS33006.1| Methylase, putative, hemK and PrmA related [Thermococcus
           gammatolerans EJ3]
          Length = 195

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 12/83 (14%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           +Y   E++F          +L   L    G     L++  G G  +L++AR    VL V+
Sbjct: 17  VYEPAEDTF----------LLAETLEVRPGEIA--LDVGTGTGLIALLMARKAKYVLGVD 64

Query: 239 IAKPSVEAARYNIAANHVNNVKI 261
           +   +VE AR N   N ++NV+ 
Sbjct: 65  VNPKAVELARRNARLNGISNVEF 87


>gi|308231588|ref|ZP_07413001.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308369432|ref|ZP_07417752.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308370447|ref|ZP_07421523.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308371706|ref|ZP_07425893.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308372931|ref|ZP_07430423.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308374042|ref|ZP_07434610.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308375194|ref|ZP_07443044.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308376441|ref|ZP_07438834.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308377459|ref|ZP_07479236.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308378671|ref|ZP_07483429.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308379813|ref|ZP_07487662.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308395844|ref|ZP_07492167.2| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|308216770|gb|EFO76169.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu001]
 gi|308327629|gb|EFP16480.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu002]
 gi|308331984|gb|EFP20835.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu003]
 gi|308335771|gb|EFP24622.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu004]
 gi|308339377|gb|EFP28228.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu005]
 gi|308343253|gb|EFP32104.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu006]
 gi|308347145|gb|EFP35996.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu007]
 gi|308351083|gb|EFP39934.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu008]
 gi|308355719|gb|EFP44570.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu009]
 gi|308359674|gb|EFP48525.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu010]
 gi|308363579|gb|EFP52430.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu011]
 gi|308367215|gb|EFP56066.1| benzoquinone methyltransferase [Mycobacterium tuberculosis SUMu012]
 gi|323721034|gb|EGB30098.1| benzoquinone methyltransferase [Mycobacterium tuberculosis
           CDC1551A]
          Length = 225

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L      +GD+L++ CG    SL LA      + ++++  +VE AR+  A   + N   
Sbjct: 39  ALIVQGKFRGDVLDVGCGEAAISLALAERGHTTVGLDLSPAAVELARHEAAKRGLANASF 98

Query: 262 VRMSSKEFT 270
               +  FT
Sbjct: 99  EVADASSFT 107


>gi|302871980|ref|YP_003840616.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574839|gb|ADL42630.1| RNA cap guanine-N2 methyltransferase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 389

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 14/112 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            V          +L+ +C  G F++  A+    +V+ V+I+  ++E A  N   N V + 
Sbjct: 206 RVAIRNFVKNKVVLDCFCHTGGFTINAAKFGASKVIGVDISDTAIEQAVKNAKLNGVESK 265

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            + V  +             F+ L ++D    ++  I +DPP       T+ 
Sbjct: 266 CEFVVANV------------FDYLNELDDKKEKYDMIILDPPAFAKSMHTLE 305


>gi|15607700|ref|NP_215074.1| benzoquinone methyltransferase [Mycobacterium tuberculosis H37Rv]
 gi|15839958|ref|NP_334995.1| hypothetical protein MT0586 [Mycobacterium tuberculosis CDC1551]
 gi|31791742|ref|NP_854235.1| benzoquinone methyltransferase [Mycobacterium bovis AF2122/97]
 gi|121636478|ref|YP_976701.1| putative benzoquinone methyltransferase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148660329|ref|YP_001281852.1| putative benzoquinone methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148821761|ref|YP_001286515.1| benzoquinone methyltransferase [Mycobacterium tuberculosis F11]
 gi|167968367|ref|ZP_02550644.1| hypothetical benzoquinone methyltransferase [Mycobacterium
           tuberculosis H37Ra]
 gi|215402326|ref|ZP_03414507.1| benzoquinone methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|215410097|ref|ZP_03418905.1| benzoquinone methyltransferase [Mycobacterium tuberculosis
           94_M4241A]
 gi|215425795|ref|ZP_03423714.1| benzoquinone methyltransferase [Mycobacterium tuberculosis T92]
 gi|215429392|ref|ZP_03427311.1| benzoquinone methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|215444670|ref|ZP_03431422.1| benzoquinone methyltransferase [Mycobacterium tuberculosis T85]
 gi|218752198|ref|ZP_03530994.1| benzoquinone methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|219556396|ref|ZP_03535472.1| benzoquinone methyltransferase [Mycobacterium tuberculosis T17]
 gi|224988950|ref|YP_002643637.1| putative benzoquinone methyltransferase [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253797492|ref|YP_003030493.1| benzoquinone methyltransferase [Mycobacterium tuberculosis KZN
           1435]
 gi|254230903|ref|ZP_04924230.1| hypothetical protein TBCG_00555 [Mycobacterium tuberculosis C]
 gi|254363519|ref|ZP_04979565.1| hypothetical benzoquinone methyltransferase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549515|ref|ZP_05139962.1| benzoquinone methyltransferase [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185434|ref|ZP_05762908.1| benzoquinone methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|260199563|ref|ZP_05767054.1| benzoquinone methyltransferase [Mycobacterium tuberculosis T46]
 gi|260203717|ref|ZP_05771208.1| benzoquinone methyltransferase [Mycobacterium tuberculosis K85]
 gi|289441945|ref|ZP_06431689.1| benzoquinone methyltransferase [Mycobacterium tuberculosis T46]
 gi|289446107|ref|ZP_06435851.1| benzoquinone methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289552812|ref|ZP_06442022.1| benzoquinone methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289568488|ref|ZP_06448715.1| benzoquinone methyltransferase [Mycobacterium tuberculosis T17]
 gi|289573152|ref|ZP_06453379.1| benzoquinone methyltransferase [Mycobacterium tuberculosis K85]
 gi|289744273|ref|ZP_06503651.1| benzoquinone methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289749059|ref|ZP_06508437.1| benzoquinone methyltransferase [Mycobacterium tuberculosis T92]
 gi|289752599|ref|ZP_06511977.1| benzoquinone methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289756637|ref|ZP_06516015.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289760679|ref|ZP_06520057.1| benzoquinone methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|294996070|ref|ZP_06801761.1| benzoquinone methyltransferase [Mycobacterium tuberculosis 210]
 gi|297633050|ref|ZP_06950830.1| benzoquinone methyltransferase [Mycobacterium tuberculosis KZN
           4207]
 gi|297730027|ref|ZP_06959145.1| benzoquinone methyltransferase [Mycobacterium tuberculosis KZN
           R506]
 gi|313657355|ref|ZP_07814235.1| benzoquinone methyltransferase [Mycobacterium tuberculosis KZN
           V2475]
 gi|2114022|emb|CAB08971.1| POSSIBLE BENZOQUINONE METHYLTRANSFERASE (METHYLASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|13880098|gb|AAK44809.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|31617328|emb|CAD93437.1| POSSIBLE BENZOQUINONE METHYLTRANSFERASE (METHYLASE) [Mycobacterium
           bovis AF2122/97]
 gi|121492125|emb|CAL70590.1| POssible benzoquinone methyltransferase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124599962|gb|EAY58972.1| hypothetical protein TBCG_00555 [Mycobacterium tuberculosis C]
 gi|134149033|gb|EBA41078.1| hypothetical benzoquinone methyltransferase [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504481|gb|ABQ72290.1| putative benzoquinone methyltransferase [Mycobacterium tuberculosis
           H37Ra]
 gi|148720288|gb|ABR04913.1| hypothetical benzoquinone methyltransferase [Mycobacterium
           tuberculosis F11]
 gi|224772063|dbj|BAH24869.1| putative benzoquinone methyltransferase [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253318995|gb|ACT23598.1| benzoquinone methyltransferase [Mycobacterium tuberculosis KZN
           1435]
 gi|289414864|gb|EFD12104.1| benzoquinone methyltransferase [Mycobacterium tuberculosis T46]
 gi|289419065|gb|EFD16266.1| benzoquinone methyltransferase [Mycobacterium tuberculosis CPHL_A]
 gi|289437444|gb|EFD19937.1| benzoquinone methyltransferase [Mycobacterium tuberculosis KZN 605]
 gi|289537583|gb|EFD42161.1| benzoquinone methyltransferase [Mycobacterium tuberculosis K85]
 gi|289542242|gb|EFD45890.1| benzoquinone methyltransferase [Mycobacterium tuberculosis T17]
 gi|289684801|gb|EFD52289.1| benzoquinone methyltransferase [Mycobacterium tuberculosis 02_1987]
 gi|289689646|gb|EFD57075.1| benzoquinone methyltransferase [Mycobacterium tuberculosis T92]
 gi|289693186|gb|EFD60615.1| benzoquinone methyltransferase [Mycobacterium tuberculosis EAS054]
 gi|289708185|gb|EFD72201.1| benzoquinone methyltransferase [Mycobacterium tuberculosis GM 1503]
 gi|289712201|gb|EFD76213.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|326902389|gb|EGE49322.1| benzoquinone methyltransferase [Mycobacterium tuberculosis W-148]
 gi|328457277|gb|AEB02700.1| benzoquinone methyltransferase [Mycobacterium tuberculosis KZN
           4207]
          Length = 241

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L      +GD+L++ CG    SL LA      + ++++  +VE AR+  A   + N   
Sbjct: 55  ALIVQGKFRGDVLDVGCGEAAISLALAERGHTTVGLDLSPAAVELARHEAAKRGLANASF 114

Query: 262 VRMSSKEFT 270
               +  FT
Sbjct: 115 EVADASSFT 123


>gi|325067277|ref|ZP_08125950.1| (Uracil-5)-methyltransferase [Actinomyces oris K20]
          Length = 180

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVL------AATKGIQGDLLELYCGNGNFSLVLARH 230
            L Y      F Q +      ++E V+               +LELY G G F+L LA  
Sbjct: 94  ELTYSVHAEGFWQVHVDAPRMLVERVVRGALREDLEGAAGSRVLELYSGAGLFTLPLAAL 153

Query: 231 F---DRVLAVEIAKPSVEAARYNI 251
                +VL++E  + +V  AR  +
Sbjct: 154 AGDRGQVLSLEGNEQAVRDARRTL 177


>gi|296109294|ref|YP_003616243.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
 gi|295434108|gb|ADG13279.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
          Length = 381

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 15/123 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNV 259
            L         +L+++C  G FS+  A     V  ++++K ++  A  N+  N++  +  
Sbjct: 200 ALEKFIKPGDRVLDVFCYTGGFSVHAAIRGAYVTGIDLSKKALSVAEQNMEINNIPKDRY 259

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
           + +  ++            F  L D+     ++  + +DPP    D+  +   ++AY  I
Sbjct: 260 EFIEGNA------------FEILTDLADRGEKYDVVILDPPAFTRDEDDIKRALKAYSTI 307

Query: 319 LYI 321
            Y+
Sbjct: 308 NYL 310


>gi|298524048|ref|ZP_07011457.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298493842|gb|EFI29136.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 238

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L      +GD+L++ CG    SL LA      + ++++  +VE AR+  A   + N   
Sbjct: 52  ALIVQGKFRGDVLDVGCGEAAISLALAERGHTTVGLDLSPAAVELARHEAAKRGLANASF 111

Query: 262 VRMSSKEFT 270
               +  FT
Sbjct: 112 EVADASSFT 120


>gi|261402840|ref|YP_003247064.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
 gi|261369833|gb|ACX72582.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
          Length = 385

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           L         +L++ C  G FS+  A     V+ V+++K +++ A  N+  N++  +  +
Sbjct: 206 LERFIKEGDRVLDVCCYTGGFSVHAAIRGAEVVGVDLSKKALKTAEENMELNNIPKDKYE 265

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +  ++            F  +++      RF  + +DPP       ++ 
Sbjct: 266 FIEGNA------------FKIMEEFIEDGERFDVVILDPPAFAQSKKSLK 303


>gi|262404523|ref|ZP_06081078.1| Polypeptide chain release factor methylase [Vibrio sp. RC586]
 gi|262349555|gb|EEY98693.1| Polypeptide chain release factor methylase [Vibrio sp. RC586]
          Length = 286

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I+G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALEKAALIEGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      RV  +++   + E A+ N     + N + ++ S            
Sbjct: 124 TGAIALALASELPLRRVTGIDLRPEAAELAQENATRLSILNTQFLQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                        +F  I  +PP
Sbjct: 172 ----WFSPLAGGTKFALIVSNPP 190


>gi|225461279|ref|XP_002284299.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 608

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 20/253 (7%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLR 139
            L+   +       ++  +L A L +   + S  +  +V  I H  L D+      +  +
Sbjct: 302 ELVKCKLTLFYNYWQMNEILEALLPEGMIVPSAFE--MVGHIAHLNLRDEHLPYKKLIAK 359

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTV--AGRTLIYRQIENS-FTQP------ 190
             L   K +IQ +   NKT   +  DY   +L V    R+L+   IEN    Q       
Sbjct: 360 VVLDKNKPKIQTVV--NKTD-AIHNDYRTMQLEVLAGNRSLVTTVIENGMRFQVDLATVY 416

Query: 191 -NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N+ +        L         + +++ G G  ++  A+   RV A ++   ++E    
Sbjct: 417 WNSRLATE--RQRLLNCFTRNDVVCDVFSGVGPIAISAAKKVKRVYANDLNPYAIEYLES 474

Query: 250 NIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           N   N +   +K+  M  + F  AM    +   +  + ++       F+D  R      +
Sbjct: 475 NSVLNKLERKIKVFNMDGRRFINAMFTSDKAESITQVVMNLPNDAAEFLDAFRGIFRKKS 534

Query: 309 VGMVQAYPHI-LY 320
                  P I +Y
Sbjct: 535 RDKQLKLPMIHVY 547


>gi|54294134|ref|YP_126549.1| hypothetical protein lpl1198 [Legionella pneumophila str. Lens]
 gi|53753966|emb|CAH15437.1| hypothetical protein lpl1198 [Legionella pneumophila str. Lens]
 gi|307609945|emb|CBW99473.1| hypothetical protein LPW_12461 [Legionella pneumophila 130b]
          Length = 390

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +L+LY   G F+L  A+     V AV+ +  ++E A+ N   NH+N ++ ++
Sbjct: 216 AKLSRGKRVLDLYTFTGGFALHAAKAGALHVTAVDSSAQAIEQAKNNAVLNHLNTIEFIK 275

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
             ++E+ +                 +  +  + +DPP+       +   + Y   L+
Sbjct: 276 ADAREYLK----------------MAGEYDVVILDPPKLVPSQKHLQQAKNYYRFLH 316


>gi|312081621|ref|XP_003143104.1| hypothetical protein LOAG_07527 [Loa loa]
 gi|307761735|gb|EFO20969.1| hypothetical protein LOAG_07527 [Loa loa]
          Length = 499

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 73/256 (28%), Gaps = 54/256 (21%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF------------QVPNLQ-----IFRSEP-IHYRMR 46
           L    Y +QL  K+  ++++ + F               +++     I  S     YR +
Sbjct: 208 LADKPYNEQLEIKMKDVKRIAMNFLKEMIGARVNGASKVDIESLIESILPSPRITEYRNK 267

Query: 47  AEFHIW-----HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLR 101
            EF I      H         F       + +D     S  +  ++      +     L 
Sbjct: 268 CEFTIGRNIDGHISVGFVGGRFAANQHFVVSVDTCDNISAHMKRIVGAFEKLVVESGELP 327

Query: 102 AKLFQIDYL-----TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
              F+   +       +    I+ ++    ++D  +E    L   +  R  Q+  +   N
Sbjct: 328 FNEFERKGVWKMLSIREFGSDIMMIVTIFPMED--KEREKALIKVVEERFLQLDNLFDEN 385

Query: 157 KT--------------------KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
                                 +      Y+ E +  A     +R   +SF Q N     
Sbjct: 386 SLFRITSLYWQRLANASDPVIYEHIAGAPYIYETILDA----RFRVSPSSFFQTNTAGAA 441

Query: 197 HMLEWVLAATKGIQGD 212
            + + +       + D
Sbjct: 442 ILYKTIAEKCGLCKMD 457


>gi|187778462|ref|ZP_02994935.1| hypothetical protein CLOSPO_02056 [Clostridium sporogenes ATCC
           15579]
 gi|187772087|gb|EDU35889.1| hypothetical protein CLOSPO_02056 [Clostridium sporogenes ATCC
           15579]
          Length = 312

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 68/191 (35%), Gaps = 17/191 (8%)

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             ++  +  +        + +V +  H++ ++ W     +            +    ++K
Sbjct: 81  DYIKESISNLGQFGIDKGEGLVEV--HKVNEEDWENNWKK----------YYKPTKVSDK 128

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             I      + E        +I +                M    L         + ++ 
Sbjct: 129 IVI----KPIWENYDKKEEEIIVQLDPGMAFGTGTHETTRMCINALEKYIKEDKTVFDIG 184

Query: 218 CGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           CG+G  S+  A+     V+ V++   +V++++ NI  N+++N++I+  +  E  +     
Sbjct: 185 CGSGILSIASAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGNLMEVVEGRANI 244

Query: 277 REFNRLKDIDI 287
              N + D+ I
Sbjct: 245 VVANIIADVII 255


>gi|56418632|ref|YP_145950.1| hypothetical protein GK0097 [Geobacillus kaustophilus HTA426]
 gi|56378474|dbj|BAD74382.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 261

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 30/116 (25%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            G+ GDLL++ CG G   L LA+ F   RV  +++ + ++E A+ N  AN ++N  I + 
Sbjct: 117 PGVAGDLLDVGCGYGPIGLALAKSFPNRRVHMIDVNERALELAQENKQANGIDNAVIYKS 176

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                         F+ + +      RF  +  +PP           ++A   ++Y
Sbjct: 177 D------------LFSEVGEQ-----RFAAVVTNPP-----------IRAGKRVVY 204


>gi|296106821|ref|YP_003618521.1| Predicted SAM-dependent methyltransferase [Legionella pneumophila
           2300/99 Alcoy]
 gi|295648722|gb|ADG24569.1| Predicted SAM-dependent methyltransferase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 390

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +L+LY   G F+L  A+     V AV+ +  ++E A+ N   NH+N ++ ++
Sbjct: 216 AKLSRGKRVLDLYTFTGGFALHAAKAGALHVTAVDSSAQAIEQAKNNAVLNHLNTIEFIK 275

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
             ++E+ +                 +  +  + +DPP+       +   + Y   L+
Sbjct: 276 ADAREYLK----------------MAGEYDVVILDPPKLVPSQKHLQQAKNYYRFLH 316


>gi|224098788|ref|XP_002192822.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
          Length = 89

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 15/76 (19%)

Query: 304 LDDATVGMVQAYP---HILYISCNPDSLC-RDLSILS-----------TTHTIERLALFD 348
            D   V  ++       +LYISC P+    R+   L                      FD
Sbjct: 14  ADHRVVRAIRNCRSIRRLLYISCKPEGEAMRNFLELCCPPDPQKKLAGEPFVPVLAIPFD 73

Query: 349 QFPYTRHMECGVLLVR 364
            FP+T H E  +L  R
Sbjct: 74  MFPHTVHCELVLLFTR 89


>gi|323492376|ref|ZP_08097529.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Vibrio brasiliensis LMG 20546]
 gi|323313423|gb|EGA66534.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Vibrio brasiliensis LMG 20546]
          Length = 286

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L      QGD+L+L  G
Sbjct: 77  IVGEREFWSLPLKVSPSTLIPRPD-----------TERLVEIALDKALNNQGDILDLGTG 125

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      ++  V++   + + A+ N  A  ++N + +  S            
Sbjct: 126 TGAIALALASELPQRQIWGVDLKSEAQQLAQSNAKALKLHNTRFLAGS------------ 173

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                 +       F  I  +PP
Sbjct: 174 ----WFEPIDDGTEFALIVSNPP 192


>gi|210624200|ref|ZP_03294255.1| hypothetical protein CLOHIR_02211 [Clostridium hiranonis DSM 13275]
 gi|210153187|gb|EEA84193.1| hypothetical protein CLOHIR_02211 [Clostridium hiranonis DSM 13275]
          Length = 289

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 26/183 (14%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP- 190
            E    L    H   ++    G + + K         E  T+  + L +      F    
Sbjct: 41  MEKEWSLWKNPHGHYHRSNRGGGSWEQKKKY-----PESWTINYKNLKFNIRPTGFKHTG 95

Query: 191 -NAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
                  +   M++ +  A + I+  +L L+   G  ++  A     V  V+ AK  V  
Sbjct: 96  LFPEQAANWDWMIDKIKKAKRPIK--VLNLFAYTGGATVACASAGAEVCHVDAAKGMVNW 153

Query: 247 ARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           A+ NIA + + N  V+ +     +F      ERE  R         ++  I +DPP  G 
Sbjct: 154 AKDNIALSGLQNQTVRFIVDDVVKFV-----EREIRR-------GRKYDAIIMDPPSYGR 201

Query: 305 DDA 307
              
Sbjct: 202 GPK 204


>gi|153940913|ref|YP_001392234.1| ribosomal protein L11 methyltransferase [Clostridium botulinum F
           str. Langeland]
 gi|170754529|ref|YP_001782590.1| ribosomal protein L11 methyltransferase [Clostridium botulinum B1
           str. Okra]
 gi|166223409|sp|A7GHH4|PRMA_CLOBL RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226710065|sp|B1ILM1|PRMA_CLOBK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|152936809|gb|ABS42307.1| ribosomal protein L11 methyltransferase [Clostridium botulinum F
           str. Langeland]
 gi|169119741|gb|ACA43577.1| ribosomal protein L11 methyltransferase [Clostridium botulinum B1
           str. Okra]
 gi|295320232|gb|ADG00610.1| ribosomal protein L11 methyltransferase [Clostridium botulinum F
           str. 230613]
          Length = 312

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 67/191 (35%), Gaps = 17/191 (8%)

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             ++  +  +D       + +V +  H + ++ W     +            +    +NK
Sbjct: 81  DYIKKSVSNLDQFGIDKGEGLVEV--HEVNEEDWENNWKK----------YYKPTKVSNK 128

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             I      + E        +I                  M    L         + ++ 
Sbjct: 129 IVI----KPIWENYDKKQEEIIVELDPGMAFGTGTHETTRMCINALEKYIKEDRTVFDIG 184

Query: 218 CGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           CG+G  S+  A+     V+ V++   +V++++ NI  N+++N++I+  +  E  +     
Sbjct: 185 CGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKYNNLDNIEILEGNLMEVVEGRANI 244

Query: 277 REFNRLKDIDI 287
              N + D+ I
Sbjct: 245 VVANIIADVII 255


>gi|41408904|ref|NP_961740.1| hypothetical protein MAP2806c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397263|gb|AAS05123.1| hypothetical protein MAP_2806c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 361

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 89/279 (31%), Gaps = 61/279 (21%)

Query: 40  PIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPL 99
           P  +R R    +  D    +H    ++    +R     PG                    
Sbjct: 129 PTGWRTRVRLDVGADRRPGFHRYHSEELVTDLRCAQLPPG-------------------- 168

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK 159
           +   + +  + ++      V        DD  R     LR             GR   TK
Sbjct: 169 MLDGIAETQWPSAAQLHVAV-------DDDGARHVVRTLRQ------------GRRTATK 209

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYC 218
           +   R    +R++       +R    +F Q +          VL   +   G    +LY 
Sbjct: 210 VIEGRYEAVQRVS----GRSWRVPVTAFWQAHRDAAATYRALVLDWAQPGAGMTAWDLYG 265

Query: 219 GNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           G G F+  L        RVL+V+ ++ S  AAR  +A   +  V++V  S +    A R 
Sbjct: 266 GAGVFAAALGEAVCASGRVLSVDTSRASTRAARAALA--DLPQVQVVTDSVRRALAAQRT 323

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                        + +     +DPPR+G     +  + A
Sbjct: 324 P------------ALQADVAVLDPPRAGAGREVIDSLAA 350


>gi|23335469|ref|ZP_00120705.1| COG2813: 16S RNA G1207 methylase RsmC [Bifidobacterium longum
           DJO10A]
 gi|189439026|ref|YP_001954107.1| 16S RNA G1207 methylase [Bifidobacterium longum DJO10A]
 gi|312132466|ref|YP_003999805.1| rsmc [Bifidobacterium longum subsp. longum BBMN68]
 gi|189427461|gb|ACD97609.1| 16S RNA G1207 methylase [Bifidobacterium longum DJO10A]
 gi|291516654|emb|CBK70270.1| 16S rRNA m(2)G 1207 methyltransferase [Bifidobacterium longum
           subsp. longum F8]
 gi|311773388|gb|ADQ02876.1| RsmC [Bifidobacterium longum subsp. longum BBMN68]
          Length = 218

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    + GD L+L CG G  +L LA       V AV++ + +++    N  AN   N+  
Sbjct: 53  APEPPLTGDFLDLGCGWGPIALTLAFESPEANVWAVDVNERALDLTHANAQANGHTNIHT 112

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            ++           +  F      D+    F  I+ +PP     +A   ++ A+
Sbjct: 113 AQVDESSTPLPAENQPAFCETVPSDLT---FDVIWSNPPIRVGKEALHTLLMAW 163


>gi|258626138|ref|ZP_05720986.1| Protein hemK [Vibrio mimicus VM603]
 gi|258581493|gb|EEW06394.1| Protein hemK [Vibrio mimicus VM603]
          Length = 177

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 13/108 (12%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L     I+G+LL+L  G
Sbjct: 75  ILGEREFWSLPLKVSPSTLIPRPD-----------TERLVELALEKAALIEGELLDLGTG 123

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            G  +L LA      RV  +++   + E A+ N     + N +     
Sbjct: 124 TGAIALALASELPLRRVTGIDLRPEAAELAQENATRLSILNTQFFAGE 171


>gi|182414517|ref|YP_001819583.1| putative SAM-dependent methyltransferase [Opitutus terrae PB90-1]
 gi|177841731|gb|ACB75983.1| putative SAM-dependent methyltransferase [Opitutus terrae PB90-1]
          Length = 408

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 16/120 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            V A   G    +L+ +C  G F+L  AR    +VL ++ A+ +V AAR N   N + N 
Sbjct: 228 RVAAYCAG--KRVLDAFCNQGAFALHAARAGASKVLGLDSAEDAVAAARRNATQNRL-NA 284

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
           +    +  ++  A  R  E             +  I +DPP      + +   ++ Y  I
Sbjct: 285 EFGVANVFDWFNAPGRAAE-----------PLWDVIILDPPPFAKSKSALEGALRGYKEI 333


>gi|54297147|ref|YP_123516.1| hypothetical protein lpp1192 [Legionella pneumophila str. Paris]
 gi|53750932|emb|CAH12343.1| hypothetical protein lpp1192 [Legionella pneumophila str. Paris]
          Length = 390

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 17/117 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +L+LY   G F+L  A+    +V AV+ +  ++E A+ N   NH+N ++ ++
Sbjct: 216 AKLSRGKRVLDLYTFTGGFALHAAKAGALQVTAVDSSAQAIEQAKNNAVLNHLNTIEFIK 275

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
             ++E+ +                 +  +  + +DPP+       +   + Y   L+
Sbjct: 276 ADAREYLK----------------MAGEYDVVILDPPKLVPSQKHLQQAKNYYRFLH 316


>gi|153948102|ref|YP_001401038.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pseudotuberculosis IP 31758]
 gi|152959597|gb|ABS47058.1| methyltransferase, HemK family [Yersinia pseudotuberculosis IP
           31758]
          Length = 276

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA    +   +L+L  G G  +L LA  R    V+AV+I   +V  AR+N     
Sbjct: 98  LVEQALARLPSMPCRILDLGTGTGAIALALASERRDCAVIAVDINADAVALARHNAKKLA 157

Query: 256 VNNVKIVRMS 265
           ++NV  ++ S
Sbjct: 158 IDNVCFLQGS 167


>gi|226323527|ref|ZP_03799045.1| hypothetical protein COPCOM_01302 [Coprococcus comes ATCC 27758]
 gi|225208211|gb|EEG90565.1| hypothetical protein COPCOM_01302 [Coprococcus comes ATCC 27758]
          Length = 405

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 64/192 (33%), Gaps = 26/192 (13%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI-- 183
           +L +   E  I +R        +++      + K  +  ++ D ++ +    + Y     
Sbjct: 146 ILKEVLSEDGITIRGVYERSDAKVRQNEGMERVKGFIGEEF-DTKVEIVENGVRYMVDVK 204

Query: 184 ---ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEI 239
              +  F              +         ++L+ +   G+F+L         V  V+ 
Sbjct: 205 DGQKTGFF------LDQKYNRLAIQRLCKDAEVLDCFTHTGSFALNAGIAGAKHVTGVDA 258

Query: 240 AKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           ++  +E AR N   N + + V+ V                F+ L  ++    ++  + +D
Sbjct: 259 SELGIEQARENARLNGLEDRVEFVCADV------------FDLLPKLEEEGKQYDVVILD 306

Query: 299 PPRSGLDDATVG 310
           PP       T+ 
Sbjct: 307 PPAFTKSRKTIK 318


>gi|51596332|ref|YP_070523.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pseudotuberculosis IP 32953]
 gi|170024409|ref|YP_001720914.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pseudotuberculosis YPIII]
 gi|186895375|ref|YP_001872487.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pseudotuberculosis PB1/+]
 gi|51589614|emb|CAH21244.1| putative protoporphyrinogen oxidase [Yersinia pseudotuberculosis IP
           32953]
 gi|169750943|gb|ACA68461.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Yersinia pseudotuberculosis YPIII]
 gi|186698401|gb|ACC89030.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Yersinia pseudotuberculosis PB1/+]
          Length = 276

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA    +   +L+L  G G  +L LA  R    V+AV+I   +V  AR+N     
Sbjct: 98  LVEQALARLPSMPCRILDLGTGTGAIALALASERRDCAVIAVDINADAVALARHNAKKLA 157

Query: 256 VNNVKIVRMS 265
           ++NV  ++ S
Sbjct: 158 IDNVCFLQGS 167


>gi|261417598|ref|YP_003251280.1| methyltransferase small [Geobacillus sp. Y412MC61]
 gi|261374055|gb|ACX76798.1| methyltransferase small [Geobacillus sp. Y412MC61]
          Length = 202

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 30/116 (25%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            G+ GDLL++ CG G   L LA+ F   RV  +++ + ++E A+ N  AN ++N  I + 
Sbjct: 58  PGVAGDLLDVGCGYGPIGLALAKSFPNRRVHMIDVNERALELAQENKQANGIDNAVIYKS 117

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                         F+ + +      RF  +  +PP           ++A   ++Y
Sbjct: 118 D------------LFSEVGEQ-----RFAAVVTNPP-----------IRAGKRVVY 145


>gi|88603852|ref|YP_504030.1| methyltransferase small [Methanospirillum hungatei JF-1]
 gi|88189314|gb|ABD42311.1| methyltransferase [Methanospirillum hungatei JF-1]
          Length = 202

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 19/137 (13%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            Q  A +   ++   + A       +L+L CG G  ++  A     V+AVE    ++  A
Sbjct: 26  YQTPAPLAARLIHMAMLAGDITDRTVLDLGCGTGILAIGAALLGAEVVAVEDDVEAIRIA 85

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---- 303
             N      + ++ ++            E     + D         T+ ++PP       
Sbjct: 86  EANARDLGCS-IRFIKTDVA-------GEEALALIPD-------CDTVIMNPPFGAQTEH 130

Query: 304 LDDATVGMVQAYPHILY 320
            D   + M     H++Y
Sbjct: 131 ADRPFLDMALLKAHVIY 147


>gi|254520439|ref|ZP_05132495.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226914188|gb|EEH99389.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 391

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
                      D+L+ +   G+F+L         VL +++++ +++ A+ N   N++ + 
Sbjct: 208 RAAMHRICKDKDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAIDCAKKNAELNNLQDV 267

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH 317
           VK    ++            F+ L D      +F  + +DPP       T+   ++ Y  
Sbjct: 268 VKFECHNA------------FDVLGDWSREGKQFDVVILDPPAFTKSRNTIKSAIRGYKE 315

Query: 318 I 318
           I
Sbjct: 316 I 316


>gi|297528473|ref|YP_003669748.1| methyltransferase small [Geobacillus sp. C56-T3]
 gi|319765256|ref|YP_004130757.1| methyltransferase small [Geobacillus sp. Y412MC52]
 gi|297251725|gb|ADI25171.1| methyltransferase small [Geobacillus sp. C56-T3]
 gi|317110122|gb|ADU92614.1| methyltransferase small [Geobacillus sp. Y412MC52]
          Length = 200

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 30/116 (25%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            G+ GDLL++ CG G   L LA+ F   RV  +++ + ++E A+ N  AN ++N  I + 
Sbjct: 56  PGVAGDLLDVGCGYGPIGLALAKSFPNRRVHMIDVNERALELAQENKQANGIDNAVIYKS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                         F+ + +      RF  +  +PP           ++A   ++Y
Sbjct: 116 D------------LFSEVGEQ-----RFAAVVTNPP-----------IRAGKRVVY 143


>gi|257783882|ref|YP_003179099.1| SAM-dependent methyltransferase [Atopobium parvulum DSM 20469]
 gi|257472389|gb|ACV50508.1| SAM-dependent methyltransferase [Atopobium parvulum DSM 20469]
          Length = 439

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV- 256
                         +L+ +C  G F L   A   D V  V++++ +++ AR N   N + 
Sbjct: 247 YNRRAVRQLAQGHRVLDCFCHVGPFGLNATAGGADFVRCVDVSQTAIDLARQNAELNGLA 306

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAY 315
           + +     +  E+   + R+R       +      F  I +DPP      D     ++ Y
Sbjct: 307 DRIDFTCANVLEYLPELARDR-----TQLKAEGGPFDLIILDPPAFTKTRDKVRSAMRGY 361

Query: 316 PHI 318
             I
Sbjct: 362 KEI 364


>gi|294495331|ref|YP_003541824.1| methyltransferase [Methanohalophilus mahii DSM 5219]
 gi|292666330|gb|ADE36179.1| methyltransferase [Methanohalophilus mahii DSM 5219]
          Length = 331

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 17/110 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++++ G G +S+  A+    V A++    +VE  + NI  N ++NV+     +++    
Sbjct: 184 VVDMFAGVGPYSIPAAKKCSYVYAIDKNPHAVEYLQKNIEINRLDNVEAFVADARDL--- 240

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYPHILY 320
                         +       + ++ P +  D  D  V + +    I Y
Sbjct: 241 ------------PGMLGQVADHVIMNLPHNACDFVDEAVALTKPGGLIHY 278


>gi|256810964|ref|YP_003128333.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256794164|gb|ACV24833.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 266

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 47/113 (41%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            + +       + +L  G+G  +++ AR   +V A+E+   + + A+ N+  N  +N+++
Sbjct: 27  AIESVVDKDDIVFDLGTGSGILAMIAARKAKKVYAIELDPFTYDYAKENVKINGFDNIEV 86

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +   + E+    + +     L D  + +     +     + G       ++ A
Sbjct: 87  IEGDASEYNFKEKADVVIAELLDTALITEPQVKVINSIIKRGFLKENARIIPA 139


>gi|212695650|ref|ZP_03303778.1| hypothetical protein ANHYDRO_00167 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677323|gb|EEB36930.1| hypothetical protein ANHYDRO_00167 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 146

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 62/155 (40%), Gaps = 12/155 (7%)

Query: 6   LIDQYEQQLAEKVDRLRQMM---LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
           +   Y+ Q+  K + ++  +      ++ ++++ +S+   YR +    I  DG   Y+  
Sbjct: 1   MDINYKSQIKLKENLIKNALLKSAKIELEDIEVLQSKEFSYRNKIRLQITKDGKLAYNKK 60

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           +   + + + I   +    LI   + ++  TI  E   +      +     +D+ I+  I
Sbjct: 61  Y---SNDLVEIKDCLLAKDLIRDNLGQI-ETITKEISKKYPNSLEEITIRANDEEILLNI 116

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
             ++ DD   +    ++       + I LI +  K
Sbjct: 117 --KIKDD---KIIPYIKKQYKNSSFNINLINKKKK 146


>gi|53804791|ref|YP_113525.1| protein methyltransferase HemK [Methylococcus capsulatus str. Bath]
 gi|53758552|gb|AAU92843.1| protein methyltransferase HemK [Methylococcus capsulatus str. Bath]
          Length = 284

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 64/175 (36%), Gaps = 33/175 (18%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICL---DRDYVDERLTVAGRTLIYRQIENSFT 188
           R    RL  A   R++   +  RA    +      R++      V    LI R       
Sbjct: 43  RAWPERLLQADEERRFLASIAARARGVPVAYLTGVREFWSRSFKVCPDVLIPRPE----- 97

Query: 189 QPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVE 245
                    ++E  + AA +  +  +L+L  G+G  ++ LA       V AV++++ ++ 
Sbjct: 98  ------TELLVELAVEAACRRNRPRILDLGTGSGVIAVTLALECPDAEVWAVDVSESALA 151

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            AR+N AA     V+ +R               F  L        RF  I  +PP
Sbjct: 152 VARHNAAALGAKTVRFLRGD------------WFAPLP----ADIRFDLIVSNPP 190


>gi|256810236|ref|YP_003127605.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256793436|gb|ACV24105.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 383

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 52/136 (38%), Gaps = 27/136 (19%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           L         +L++ C  G FS+  A     V+ V+++K +++ A  N+  N++  +  +
Sbjct: 203 LERFVKEGDRVLDICCYTGGFSVHAAIRGAEVVGVDLSKKALKTAEENMELNNIPKDKYE 262

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-------------RSGLDDA 307
            +  ++            F  +K+      +F  + +DPP             R+     
Sbjct: 263 FIEGNA------------FEVMKEFIEDGEKFDVVVLDPPAFTQTEEDIKNALRAYASLN 310

Query: 308 TVGMVQAYPHILYISC 323
            +G+  A    +  SC
Sbjct: 311 YLGIKLAKRIFVTCSC 326


>gi|124485828|ref|YP_001030444.1| hypothetical protein Mlab_1008 [Methanocorpusculum labreanum Z]
 gi|124363369|gb|ABN07177.1| Methyltransferase type 11 [Methanocorpusculum labreanum Z]
          Length = 270

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 56/179 (31%), Gaps = 24/179 (13%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
            E          Y Q+     Q N  +   +LE           D+L++ CG G +SL L
Sbjct: 21  IELWDSQAEDPTYHQMPT--FQDNKFLQ--LLEQ--EHMIDSTSDVLDIGCGAGVYSLAL 74

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--SKEFTQAMRREREFNRLKDI 285
           A+    V  V+ +   ++ A+  +  +   NV        + +  Q   +ER        
Sbjct: 75  AQRVQSVTGVDFSPNMIQKAQEKLTEHQKTNVVFTCKDWNAVDLEQEGFKERF------- 127

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
                         P          M  +      +S NP  +     ++S  H I  +
Sbjct: 128 ------DLVFAHTSPAISDAATFEKMNASSKRFCAVS-NPTKMIE--PVMSEVHKIAGV 177


>gi|146306095|ref|YP_001186560.1| HemK family modification methylase [Pseudomonas mendocina ymp]
 gi|145574296|gb|ABP83828.1| [protein release factor]-glutamine N5-methyltransferase
           [Pseudomonas mendocina ymp]
          Length = 294

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/136 (22%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
              E    L  A   R+ Q + +       I   + +    L VA  TLI R        
Sbjct: 62  ELDEQQQALFQANLMRRRQGEPVAY-----ILGHQGFWSLELEVAPHTLIPRPD------ 110

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAA 247
                   ++E  L         +L+L  G G  +L LA  R   RV  V+  + +V  A
Sbjct: 111 -----TELLVETALELLPATPLTVLDLGTGTGAIALALASERPAWRVTGVDRVEDAVALA 165

Query: 248 RYNIAANHVNNVKIVR 263
             N     ++N   V 
Sbjct: 166 ERNRQRLQLDNAAFVH 181


>gi|212225058|ref|YP_002308294.1| N5-glutamine methyltransferase [Thermococcus onnurineus NA1]
 gi|212010015|gb|ACJ17397.1| N5-glutamine methyltransferase [Thermococcus onnurineus NA1]
          Length = 194

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR 229
           L +     +Y   E++F              +        GD+ L++  G G  +L++AR
Sbjct: 8   LKLKLHPQVYEPAEDTFL-------------LAENLAVKHGDVALDMGTGTGIIALLMAR 54

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             + VL V++   +++ AR N   N + NV+ ++ +  E
Sbjct: 55  KAEYVLGVDVNPLAIKLARENARLNGIENVEFIQSNLFE 93


>gi|300727618|ref|ZP_07061007.1| ribosomal protein L11 methyltransferase [Prevotella bryantii B14]
 gi|299775138|gb|EFI71741.1| ribosomal protein L11 methyltransferase [Prevotella bryantii B14]
          Length = 273

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
                 M+   L         +L+  CG G   L  ++     ++  +I + SVE A++N
Sbjct: 119 THQTTRMIVSALLHMGVHDKRILDCGCGTGILGLAASKLGAKDIVGYDIDEWSVENAKHN 178

Query: 251 IAANHVNNVKIVRMSS 266
              N V N++I    +
Sbjct: 179 AEINGVKNMEIYHGDA 194


>gi|225574873|ref|ZP_03783483.1| hypothetical protein RUMHYD_02951 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037947|gb|EEG48193.1| hypothetical protein RUMHYD_02951 [Blautia hydrogenotrophica DSM
           10507]
          Length = 408

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 27/201 (13%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY--RQI 183
           LL +   E  I++R        +++L    ++ K  L   + D  + +    + Y     
Sbjct: 149 LLKEVLAEDGIQIRGIYERSDAKVRLNEGMDRVKGFLSEPF-DTNVPITENGIRYLVDVK 207

Query: 184 EN---SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEI 239
           E     F              +          +L+ +   G+F+L  A      VL V+ 
Sbjct: 208 EGQKTGFF------LDQKYNRLAIQRLCRDARVLDCFTHTGSFALNAALGGARSVLGVDA 261

Query: 240 AKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           ++     AR N   N + + V+ +     E    + +E E            +F  + +D
Sbjct: 262 SESGCARARENARLNGMEDRVEFLCADVFELLPQLEQEGE------------KFDVVILD 309

Query: 299 PPRSGLDD-ATVGMVQAYPHI 318
           PP       +    V+ Y  I
Sbjct: 310 PPAFTKSRNSVKNAVKGYREI 330


>gi|217957676|ref|YP_002336220.1| ybxB protein [Bacillus cereus AH187]
 gi|222093871|ref|YP_002527921.1| ybxb protein [Bacillus cereus Q1]
 gi|229136947|ref|ZP_04265574.1| hypothetical protein bcere0013_910 [Bacillus cereus BDRD-ST26]
 gi|229194491|ref|ZP_04321294.1| hypothetical protein bcere0001_870 [Bacillus cereus m1293]
 gi|217063004|gb|ACJ77254.1| ybxB protein [Bacillus cereus AH187]
 gi|221237919|gb|ACM10629.1| ybxB protein [Bacillus cereus Q1]
 gi|228588957|gb|EEK46972.1| hypothetical protein bcere0001_870 [Bacillus cereus m1293]
 gi|228646485|gb|EEL02692.1| hypothetical protein bcere0013_910 [Bacillus cereus BDRD-ST26]
          Length = 199

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + 
Sbjct: 56  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  H++
Sbjct: 116 SVYENVDGMYAA------------------ILSNPPIRAGKDIVHEILEKAIEHLV 153


>gi|28211651|ref|NP_782595.1| ribosomal protein L11 methyltransferase [Clostridium tetani E88]
 gi|38605254|sp|Q892R2|PRMA_CLOTE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|28204093|gb|AAO36532.1| ribosomal protein L11 methyltransferase [Clostridium tetani E88]
          Length = 314

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 83/242 (34%), Gaps = 27/242 (11%)

Query: 47  AEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ 106
            EF   + GD      +D   +  + I+       +I A   E    ++    +   +  
Sbjct: 43  VEFQKKNKGD------WDYFDETLINIEEGA----VIKAYYREDKNFMKYLKYIEESVKN 92

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           ++ L     + IVT    ++ ++ W     +            +      K  I      
Sbjct: 93  LEQLGFDKGKGIVT--TSKVNEEDWENNWKK----------YYKPTKVGEKIVI----KP 136

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           + E        +I                  M    L      +  + ++  G+G   + 
Sbjct: 137 IWEEYGENPEEIILELDPGMAFGTGTHETTRMCIESLEKYVKEEDVVFDIGTGSGILGIA 196

Query: 227 LAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            A+ +  +V+ V++ + +V++A+ N+  NH++N++I+     E  +        N + DI
Sbjct: 197 AAKLNAKKVIGVDLDEVAVDSAKKNVGFNHLDNIEILHGDLMEVVKGKCNIIVANIIADI 256

Query: 286 DI 287
            I
Sbjct: 257 II 258


>gi|332306090|ref|YP_004433941.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173419|gb|AEE22673.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 287

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 59/153 (38%), Gaps = 22/153 (14%)

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
           +   +     + LD A     +R  + L  ++ Q   +       +   RD+   RL V+
Sbjct: 45  NTVYLMTWPEKPLDAA----QLRAFEHLVEKRKQGHPVAY-----LLGYRDFWSLRLQVS 95

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFD 232
             TLI R                ++E  L      + ++L+L  G G  +L LA  +   
Sbjct: 96  PATLIPRPE-----------TELLVETALDLPLNNEANVLDLGTGTGAIALALASEKPDW 144

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +V  ++    +V  A+ N  AN + +V+  +  
Sbjct: 145 QVAGIDKNADAVALAKQNGQANKLPHVRFTQSD 177


>gi|320449949|ref|YP_004202045.1| SAM-dependent methyltransferase [Thermus scotoductus SA-01]
 gi|320150118|gb|ADW21496.1| SAM-dependent methyltransferase [Thermus scotoductus SA-01]
          Length = 381

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+++   G+F L LA  F  V++V+ +  ++  A  N   N +  +K V  ++     
Sbjct: 212 RALDVFSYAGSFGLHLALGFKEVISVDSSGEALRQAEENARLNGLT-LKTVEANA----- 265

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                  F+ L+ ++    RF  I +DPP        + 
Sbjct: 266 -------FDHLRALEKAGERFDLIVLDPPAFAKGKKDLE 297


>gi|255525325|ref|ZP_05392265.1| ribosomal protein L11 methyltransferase [Clostridium
           carboxidivorans P7]
 gi|296188193|ref|ZP_06856585.1| ribosomal protein L11 methyltransferase [Clostridium
           carboxidivorans P7]
 gi|255510997|gb|EET87297.1| ribosomal protein L11 methyltransferase [Clostridium
           carboxidivorans P7]
 gi|296047319|gb|EFG86761.1| ribosomal protein L11 methyltransferase [Clostridium
           carboxidivorans P7]
          Length = 311

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           + E  +     L+                  M    L      +  + ++  G+G  ++ 
Sbjct: 134 IWEEYSKKDDELVVELDPGMAFGTGTHETTRMCIKALEKYVKPESKIFDIGTGSGILAIT 193

Query: 227 LAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            A+     V+ V++   +V++A  N+  N V+N+KI+  +  E  Q        N + D+
Sbjct: 194 AAKLKAKEVIGVDLDPVAVKSASENVKYNDVDNIKILHGNLMEVVQGKADIVVANIIADV 253

Query: 286 DIHSYRFKTIFVDP-PRSGLDDATVG 310
            I        F+ P  R       + 
Sbjct: 254 IIFLTDGVKDFIVPGGRFICSGIILD 279


>gi|238916542|ref|YP_002930059.1| putative SAM-dependent methyltransferase [Eubacterium eligens ATCC
           27750]
 gi|238871902|gb|ACR71612.1| putative SAM-dependent methyltransferase [Eubacterium eligens ATCC
           27750]
          Length = 420

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G F+L         V  ++I++ +VE AR N   N + 
Sbjct: 232 YNRLAMQKLCKDKRVLDCFTHMGTFALNAGIAGAKEVTGLDISEYAVEQARANAKLNGLE 291

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP 316
           +           T   +     + L  ++    ++  + +DPP      +AT   ++ Y 
Sbjct: 292 D-----------TVHFKCANVLDELPKLNEAGEKYDVVILDPPAFTKSREATKNAIKGYR 340

Query: 317 HI 318
            I
Sbjct: 341 EI 342


>gi|115377525|ref|ZP_01464725.1| SAM-dependent methyltransferases [Stigmatella aurantiaca DW4/3-1]
 gi|310820069|ref|YP_003952427.1| hypothetical protein STAUR_2802 [Stigmatella aurantiaca DW4/3-1]
 gi|115365465|gb|EAU64500.1| SAM-dependent methyltransferases [Stigmatella aurantiaca DW4/3-1]
 gi|309393141|gb|ADO70600.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 394

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 17/120 (14%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A +  +G+ L+L+  +G F+L L+R  D VLAVE    +    + N   N   NV + 
Sbjct: 215 LRAGELARGEALDLFSYHGGFALALSRTCDTVLAVEQDPKASGRIQANAERNGRTNVTVE 274

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVGMVQAYPH 317
             ++ +  +                   RF T+ +DPP     R GL  A     +    
Sbjct: 275 NANAFDVLRRFAD------------TGRRFDTVVLDPPGLAKRREGLATALRAYHELNLR 322


>gi|94676905|ref|YP_588738.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220055|gb|ABF14214.1| protein methyltranferase HemK [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 281

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 2/132 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L     I   +L+L  G G  +L LA  R   +   V+    +VE A  N A   
Sbjct: 99  LVEQALGLLLPIHAKVLDLGTGTGAITLALASERPSWQFTGVDNHPGAVELADINAARLG 158

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           +NNV+ +  S  E  Q+    R    + +          +           A V      
Sbjct: 159 LNNVRFLCGSWFEPLQSQVTPRYSLIISNPPYVDANDPHLNNLGVCFEPKSALVADCNGI 218

Query: 316 PHILYISCNPDS 327
             +  I C   +
Sbjct: 219 ADLAAICCQAST 230


>gi|269961570|ref|ZP_06175932.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833611|gb|EEZ87708.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 285

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L  T G  G +L+L  G
Sbjct: 77  IIGEREFWSLPLKVSPSTLIPRPD-----------TERLVEVALDKTFGQTGPILDLGTG 125

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V+ +++ + + E A +N +  ++ NV   + S            
Sbjct: 126 TGAIALALASEMPNRQVMGIDLKQEAKELAEHNASQLNIKNVTFDQGS------------ 173

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                 +      +F  I  +PP
Sbjct: 174 ----WFEPIASGTKFALIVSNPP 192


>gi|152979100|ref|YP_001344729.1| HemK family modification methylase [Actinobacillus succinogenes
           130Z]
 gi|150840823|gb|ABR74794.1| modification methylase, HemK family [Actinobacillus succinogenes
           130Z]
          Length = 286

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/225 (20%), Positives = 82/225 (36%), Gaps = 43/225 (19%)

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           +   ++ +P L AK      L S + +    +I     D    E  ++   AL  R+   
Sbjct: 14  LSQNLKNDPYLNAKFDANLLLQSVTQKTKSQIIAFS--DTVLDEKTLQNLTALLNRRATG 71

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           + +       I  + ++    L V+  TLI R                ++E  L      
Sbjct: 72  EPVAY-----ILGETEFWTLSLKVSPHTLIPRPD-----------TEILVERALERIPLK 115

Query: 210 QG-DLLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            G  +L+L  G G  +L LA+   +      VL V++   +V  A+ N   N +++V+  
Sbjct: 116 DGVSVLDLGTGTGAIALSLAKELKKRGQKYWVLGVDLMPEAVVLAQRNAERNQLDDVEF- 174

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                      RR   FN + +       F  +  +PP    DDA
Sbjct: 175 -----------RRSSWFNNIHE------TFDLVVSNPPYIDADDA 202


>gi|326389917|ref|ZP_08211480.1| Protein of unknown function methylase putative [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993977|gb|EGD52406.1| Protein of unknown function methylase putative [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 391

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 31/150 (20%)

Query: 210 QGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
           + ++L+ +   G+F++  L     RV  V+I++ ++E A+ N+  N        V  ++ 
Sbjct: 217 EAEVLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEMAKKNVELNGYQERCDFVCDNA- 275

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYISCNPD 326
                      F+ L+  D  S +F TI +DPP      +     ++ Y  I     N  
Sbjct: 276 -----------FDLLRRYDKESRKFDTIILDPPAFTKSKETVKDALRGYKEI-----N-- 317

Query: 327 SLCRDLSILSTTHTI------ERLALFDQF 350
              R L IL     +      + +   D F
Sbjct: 318 --LRALKILREGGFLITCSCSQHIKP-DMF 344


>gi|228912840|ref|ZP_04076487.1| hypothetical protein bthur0012_890 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846776|gb|EEM91781.1| hypothetical protein bthur0012_890 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 213

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + 
Sbjct: 70  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQS 129

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  H++
Sbjct: 130 SVYENVDGMYAA------------------ILSNPPIRAGKDVVHEILEKAVEHLV 167


>gi|300119588|ref|ZP_07057132.1| ybxB protein [Bacillus cereus SJ1]
 gi|298723060|gb|EFI63958.1| ybxB protein [Bacillus cereus SJ1]
          Length = 199

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + 
Sbjct: 56  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  H++
Sbjct: 116 SVYENVDGMYAA------------------ILSNPPIRAGKDVVHEILEKAVEHLV 153


>gi|30260292|ref|NP_842669.1| ybxB protein [Bacillus anthracis str. Ames]
 gi|47525356|ref|YP_016705.1| methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183135|ref|YP_026387.1| ybxB protein [Bacillus anthracis str. Sterne]
 gi|65317558|ref|ZP_00390517.1| COG2813: 16S RNA G1207 methylase RsmC [Bacillus anthracis str.
           A2012]
 gi|165873340|ref|ZP_02217942.1| ybxB protein [Bacillus anthracis str. A0488]
 gi|167636698|ref|ZP_02394985.1| ybxB protein [Bacillus anthracis str. A0442]
 gi|167642036|ref|ZP_02400265.1| ybxB protein [Bacillus anthracis str. A0193]
 gi|170689708|ref|ZP_02880884.1| ybxB protein [Bacillus anthracis str. A0465]
 gi|170709437|ref|ZP_02899844.1| ybxB protein [Bacillus anthracis str. A0389]
 gi|177656135|ref|ZP_02937162.1| ybxB protein [Bacillus anthracis str. A0174]
 gi|190569398|ref|ZP_03022285.1| ybxB protein [Bacillus anthracis Tsiankovskii-I]
 gi|227812774|ref|YP_002812783.1| ybxB protein [Bacillus anthracis str. CDC 684]
 gi|228983356|ref|ZP_04143569.1| hypothetical protein bthur0001_870 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229602055|ref|YP_002864752.1| ybxB protein [Bacillus anthracis str. A0248]
 gi|254684395|ref|ZP_05148255.1| ybxB protein [Bacillus anthracis str. CNEVA-9066]
 gi|254720822|ref|ZP_05182614.1| ybxB protein [Bacillus anthracis str. A1055]
 gi|254733744|ref|ZP_05191459.1| ybxB protein [Bacillus anthracis str. Western North America
           USA6153]
 gi|254739413|ref|ZP_05197113.1| ybxB protein [Bacillus anthracis str. Kruger B]
 gi|254751214|ref|ZP_05203252.1| ybxB protein [Bacillus anthracis str. Vollum]
 gi|254756813|ref|ZP_05208841.1| ybxB protein [Bacillus anthracis str. Australia 94]
 gi|30253613|gb|AAP24155.1| ybxB protein [Bacillus anthracis str. Ames]
 gi|47500504|gb|AAT29180.1| ybxB protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177062|gb|AAT52438.1| ybxB protein [Bacillus anthracis str. Sterne]
 gi|164710920|gb|EDR16495.1| ybxB protein [Bacillus anthracis str. A0488]
 gi|167510002|gb|EDR85419.1| ybxB protein [Bacillus anthracis str. A0193]
 gi|167527872|gb|EDR90699.1| ybxB protein [Bacillus anthracis str. A0442]
 gi|170125654|gb|EDS94574.1| ybxB protein [Bacillus anthracis str. A0389]
 gi|170666333|gb|EDT17120.1| ybxB protein [Bacillus anthracis str. A0465]
 gi|172079855|gb|EDT64967.1| ybxB protein [Bacillus anthracis str. A0174]
 gi|190559491|gb|EDV13489.1| ybxB protein [Bacillus anthracis Tsiankovskii-I]
 gi|227007229|gb|ACP16972.1| ybxB protein [Bacillus anthracis str. CDC 684]
 gi|228776346|gb|EEM24699.1| hypothetical protein bthur0001_870 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229266463|gb|ACQ48100.1| ybxB protein [Bacillus anthracis str. A0248]
          Length = 199

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + 
Sbjct: 56  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  H++
Sbjct: 116 SVYENVDGMYAA------------------ILSNPPIRAGKDIVHEILEKAVEHLV 153


>gi|134297262|ref|YP_001120997.1| SAM-dependent methyltransferase [Burkholderia vietnamiensis G4]
 gi|134140419|gb|ABO56162.1| 23S rRNA m(5)C-1962 methyltransferase / SAM-dependent
           methyltransferase [Burkholderia vietnamiensis G4]
          Length = 408

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 224 RALVAQYAAGRDVLNCFCYTGGFSLAALKGGAQRVVSIDSSGDALALAQQNVAANGFDAA 283

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+   + D+     +AY  I
Sbjct: 284 RASWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPNRDSVERAARAYKDI 333


>gi|251780229|ref|ZP_04823149.1| PUA domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084544|gb|EES50434.1| putative RNA methylase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 396

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
                      D+L+ +   G+F+L         VL +++++ +++ A  N   N++ + 
Sbjct: 208 RAAIHRICKDKDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAIDCANKNAELNNLQDT 267

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           VK    ++ +   A  RE +            +F  + +DPP       T+   +
Sbjct: 268 VKFECHNAFDVLPAWSREEK------------KFDVVILDPPAFTKSRNTINAAK 310


>gi|187933779|ref|YP_001884339.1| PUA domain containing protein [Clostridium botulinum B str. Eklund
           17B]
 gi|187721932|gb|ACD23153.1| putative RNA methylase [Clostridium botulinum B str. Eklund 17B]
          Length = 396

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
                      D+L+ +   G+F+L         VL +++++ +++ A  N   N++ + 
Sbjct: 208 RAAIHRICKDKDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAIDCANKNAELNNLQDT 267

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           VK    ++ +   A  RE +            +F  + +DPP       T+   +
Sbjct: 268 VKFECHNAFDVLPAWSREEK------------KFDVVILDPPAFTKSRNTINAAK 310


>gi|188589114|ref|YP_001919523.1| PUA domain containing protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499395|gb|ACD52531.1| PUA domain containing protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 396

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
                      D+L+ +   G+F+L         VL +++++ +++ A  N   N++ + 
Sbjct: 208 RAAIHRICKDKDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAIDCANKNAELNNLQDT 267

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           VK    ++ +   A  RE +            +F  + +DPP       T+   +
Sbjct: 268 VKFECHNAFDVLPAWSREEK------------KFDVVILDPPAFTKSRNTINAAK 310


>gi|42779182|ref|NP_976429.1| ybxB protein [Bacillus cereus ATCC 10987]
 gi|42735097|gb|AAS39037.1| ybxB protein [Bacillus cereus ATCC 10987]
 gi|324324091|gb|ADY19351.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 199

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + 
Sbjct: 56  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  H++
Sbjct: 116 SVYENVDGMYAA------------------ILSNPPIRAGKDIVHEILEKAVEHLV 153


>gi|45551508|ref|NP_728821.2| CG32281 [Drosophila melanogaster]
 gi|45445776|gb|AAN11538.2| CG32281 [Drosophila melanogaster]
 gi|226443439|gb|ACO57630.1| MIP05081p [Drosophila melanogaster]
          Length = 457

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 89/245 (36%), Gaps = 28/245 (11%)

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF-QIDYLTSQSDQAIVTLIYHRL 126
           ++++  + F    L +               +L++ L  + + LTS S    +  +  R 
Sbjct: 111 RQKVNAENFSFADLELR------YENWSANEILKSVLPTEEEGLTSYSRIGHIAHLNLRD 164

Query: 127 LDDAWRECAIR-LRDALHARKYQIQLIGRANKT-------KICLDRDYVDERLTVAGRTL 178
               +++   + LRD L   +  +      + T        IC D DY  E        +
Sbjct: 165 HLLPYKQLIGQVLRDKLPNCRTVVNKASSIDNTYRNFQLELICGDPDYQVET---KENGV 221

Query: 179 IYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235
            +   E  F++   N  ++    E           D+L +++ G G FS+  A+    VL
Sbjct: 222 PF---EFDFSKVYWNPRLST---EHERIVKMLKSDDVLYDVFAGVGPFSIPAAKKRCHVL 275

Query: 236 AVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           A ++   S    ++N   N  + N+K+     ++F     RE    RL   D  +Y    
Sbjct: 276 ANDLNPESFRWLQHNAKRNKCLPNIKMSNKDGRQFIVEELREDLLKRLCTTDTTTYGIHI 335

Query: 295 IFVDP 299
               P
Sbjct: 336 TMNLP 340


>gi|49476714|ref|YP_034453.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196036938|ref|ZP_03104319.1| ybxB protein [Bacillus cereus W]
 gi|196042331|ref|ZP_03109606.1| ybxB protein [Bacillus cereus NVH0597-99]
 gi|218901304|ref|YP_002449138.1| ybxB protein [Bacillus cereus AH820]
 gi|228925354|ref|ZP_04088450.1| hypothetical protein bthur0010_880 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931603|ref|ZP_04094509.1| hypothetical protein bthur0009_960 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228943907|ref|ZP_04106292.1| hypothetical protein bthur0007_880 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119763|ref|ZP_04249024.1| hypothetical protein bcere0016_880 [Bacillus cereus 95/8201]
 gi|301051838|ref|YP_003790049.1| hypothetical protein BACI_c01280 [Bacillus anthracis CI]
 gi|49328270|gb|AAT58916.1| conserved hypothetical protein, possible methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|195990451|gb|EDX54438.1| ybxB protein [Bacillus cereus W]
 gi|196026837|gb|EDX65469.1| ybxB protein [Bacillus cereus NVH0597-99]
 gi|218536109|gb|ACK88507.1| ybxB protein [Bacillus cereus AH820]
 gi|228663664|gb|EEL19243.1| hypothetical protein bcere0016_880 [Bacillus cereus 95/8201]
 gi|228815740|gb|EEM61976.1| hypothetical protein bthur0007_880 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828031|gb|EEM73759.1| hypothetical protein bthur0009_960 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834276|gb|EEM79817.1| hypothetical protein bthur0010_880 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|300374007|gb|ADK02911.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 199

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + 
Sbjct: 56  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  H++
Sbjct: 116 SVYENVDGMYAA------------------ILSNPPIRAGKDVVHEILEKAVEHLV 153


>gi|299135751|ref|ZP_07028935.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
 gi|298601875|gb|EFI58029.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
          Length = 435

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G  G  L++   +G F+L LA+  +RV  V+ ++ ++E A  N+A N        ++ ++
Sbjct: 259 GRTGRALDVCTYHGGFALHLAQVCERVTGVDASRTALEVADQNLALN-------PQLKAE 311

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                      F  L   D    RF  I +DPP          
Sbjct: 312 ---TDWIEADAFELLSAYDTQHERFDAIVLDPPAFAKSKRAAE 351


>gi|293395775|ref|ZP_06640057.1| protein methyltransferase HemK [Serratia odorifera DSM 4582]
 gi|291421712|gb|EFE94959.1| protein methyltransferase HemK [Serratia odorifera DSM 4582]
          Length = 276

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANH 255
           ++E  LA     + ++L+L  G G  +L LA       V  V++   +V  A++N     
Sbjct: 98  LVEQALARLPAHRCEILDLGTGTGAIALALASERADCMVTGVDLQPQAVALAQHNAQKLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + NV+  +                       +   RF  I  +PP
Sbjct: 158 IGNVQFHQGD-----------------WFTPVAGRRFDLIASNPP 185


>gi|167471071|ref|ZP_02335775.1| methyltransferase, HemK family protein [Yersinia pestis FV-1]
          Length = 267

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA    +   +L+L  G G  +L LA  R    V+AV+I   +V  AR+N     
Sbjct: 89  LVEQALARLPAMPCRILDLGTGTGAIALALATERRDCAVIAVDINADAVALARHNAEKLT 148

Query: 256 VNNVKIVRMS 265
           ++NV  ++ S
Sbjct: 149 IDNVCFLQGS 158


>gi|312137195|ref|YP_004004532.1| methyltransferase type 11 [Methanothermus fervidus DSM 2088]
 gi|311224914|gb|ADP77770.1| Methyltransferase type 11 [Methanothermus fervidus DSM 2088]
          Length = 274

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 30/179 (16%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGI---NVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           E++ +  + + +      F   N  I   N + +  +       +  +L++ CG G  ++
Sbjct: 27  EKIKIYSKNIDWDSRAKKF---NKAIKCNNDYSINVLKRIKLDPEWSVLDVGCGPGTLAI 83

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            +A+    V AV+I+K  ++  + N     ++N+ IV                    KDI
Sbjct: 84  PIAKEVKHVTAVDISKEMLKLLKKNAEKEGISNINIVNAD----------------FKDI 127

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI----LYISCNPDSLCRDLSILSTTHT 340
           DI   +   + +     GL       ++    +    +YI     SL +D  +    + 
Sbjct: 128 DIEKIKPHDVVIASRFCGLTGDLKYELKKLDSLAKKYVYI----TSLAQDRKLNLKIYK 182


>gi|22126174|ref|NP_669597.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis KIM 10]
 gi|45441670|ref|NP_993209.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108807398|ref|YP_651314.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis Antiqua]
 gi|108811663|ref|YP_647430.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis Nepal516]
 gi|145598395|ref|YP_001162471.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis Pestoides F]
 gi|149366050|ref|ZP_01888085.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis CA88-4125]
 gi|162418925|ref|YP_001606877.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis Angola]
 gi|165926407|ref|ZP_02222239.1| methyltransferase, HemK family [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165938832|ref|ZP_02227386.1| methyltransferase, HemK family [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009186|ref|ZP_02230084.1| methyltransferase, HemK family [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211074|ref|ZP_02237109.1| methyltransferase, HemK family [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401386|ref|ZP_02306883.1| methyltransferase, HemK family [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419945|ref|ZP_02311698.1| methyltransferase, HemK family [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167424706|ref|ZP_02316459.1| methyltransferase, HemK family [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|218929129|ref|YP_002347004.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis CO92]
 gi|229894729|ref|ZP_04509909.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis Pestoides A]
 gi|229897429|ref|ZP_04512585.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898072|ref|ZP_04513223.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901941|ref|ZP_04517062.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis Nepal516]
 gi|270490876|ref|ZP_06207950.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Yersinia pestis KIM D27]
 gi|294503911|ref|YP_003567973.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis Z176003]
 gi|21959138|gb|AAM85848.1|AE013831_11 possible protoporphyrinogen oxidase [Yersinia pestis KIM 10]
 gi|45436532|gb|AAS62086.1| putative protoporphyrinogen oxidase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108775311|gb|ABG17830.1| protoporphyrinogen oxidase [Yersinia pestis Nepal516]
 gi|108779311|gb|ABG13369.1| putative protoporphyrinogen oxidase [Yersinia pestis Antiqua]
 gi|115347740|emb|CAL20655.1| putative protoporphyrinogen oxidase [Yersinia pestis CO92]
 gi|145210091|gb|ABP39498.1| protoporphyrinogen oxidase [Yersinia pestis Pestoides F]
 gi|149292463|gb|EDM42537.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis CA88-4125]
 gi|162351740|gb|ABX85688.1| methyltransferase, HemK family [Yersinia pestis Angola]
 gi|165913195|gb|EDR31818.1| methyltransferase, HemK family [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921628|gb|EDR38825.1| methyltransferase, HemK family [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991741|gb|EDR44042.1| methyltransferase, HemK family [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166208254|gb|EDR52734.1| methyltransferase, HemK family [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166961640|gb|EDR57661.1| methyltransferase, HemK family [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167049082|gb|EDR60490.1| methyltransferase, HemK family [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056588|gb|EDR66357.1| methyltransferase, HemK family [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|229680837|gb|EEO76932.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis Nepal516]
 gi|229689113|gb|EEO81178.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229693766|gb|EEO83815.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229702202|gb|EEO90221.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis Pestoides A]
 gi|262361968|gb|ACY58689.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis D106004]
 gi|262365893|gb|ACY62450.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis D182038]
 gi|270339380|gb|EFA50157.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Yersinia pestis KIM D27]
 gi|294354370|gb|ADE64711.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia pestis Z176003]
 gi|320015304|gb|ADV98875.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 276

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA    +   +L+L  G G  +L LA  R    V+AV+I   +V  AR+N     
Sbjct: 98  LVEQALARLPAMPCRILDLGTGTGAIALALATERRDCAVIAVDINADAVALARHNAEKLT 157

Query: 256 VNNVKIVRMS 265
           ++NV  ++ S
Sbjct: 158 IDNVCFLQGS 167


>gi|312884084|ref|ZP_07743797.1| methylase of polypeptide chain release factor [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309368254|gb|EFP95793.1| methylase of polypeptide chain release factor [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 286

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 53/143 (37%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L V+  TLI R                ++E  L  +  ++GD+L+L  G
Sbjct: 77  IVGEREFWSLNLKVSSSTLIPRPD-----------TERLVELALEKSTLVKGDILDLGTG 125

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA       V  V++ + +   A+ N     + N + +               
Sbjct: 126 TGAIALALASELPDRNVWGVDLKQEAQHIAQDNAERLSIKNAQFL--------------- 170

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F    +   H  +F  I  +PP
Sbjct: 171 -FGSWFEPLDHDAKFALIVSNPP 192


>gi|21227589|ref|NP_633511.1| methyltransferase [Methanosarcina mazei Go1]
 gi|20905974|gb|AAM31183.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 381

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G L ++ CG G  ++  A+  + V AVEI    +E A+ N     ++NVK +   + +  
Sbjct: 72  GTLADISCGIGGQTVFFAQQCEFVYAVEIDPKKIEYAKKNCEMYGLDNVKFICGDALD-- 129

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                         +         +F DP R   +D 
Sbjct: 130 ------------PKVIEQIPAVDVVFSDPFRPAEEDK 154


>gi|297623419|ref|YP_003704853.1| methyltransferase small [Truepera radiovictrix DSM 17093]
 gi|297164599|gb|ADI14310.1| methyltransferase small [Truepera radiovictrix DSM 17093]
          Length = 402

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV-- 262
           A +  +G  L+++C +G F+L LAR  D V+AV+ +  ++       A N     + V  
Sbjct: 218 AGEHARGRALDVFCYHGGFALQLARRADEVVAVDSSAAALAELERGAAENGPEVARRVST 277

Query: 263 -RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            R  + E  +A  R  E            RF T+ +DPP      A
Sbjct: 278 RRGDAFELLRAAVRAGE------------RFDTVVLDPPAFAKARA 311


>gi|291009557|ref|ZP_06567530.1| putative methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 133

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNF 223
            YV E+L         R                ++E +   T    GD +L++ CG G  
Sbjct: 2   PYVPEQLFAQAAPFYARYRPG--------YPAELVELLAERTGLDSGDLVLDVGCGTGQL 53

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L LAR   +V+AV+     ++ AR       V N+   +  +    
Sbjct: 54  ALPLARRVRQVVAVDPQPGMLDHAREAARRAGVGNIDWRQADASALA 100


>gi|262372380|ref|ZP_06065659.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter junii SH205]
 gi|262312405|gb|EEY93490.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter junii SH205]
          Length = 272

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 20/208 (9%)

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK------IC 161
             + S   Q    L+ H +L     E  +RL   L   + Q  L G A          + 
Sbjct: 11  GEIDSYERQEAAWLLEH-ILGINSLELKLRLEQELTEIQEQAYLNGLARIDHGEPLAYVT 69

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
             + +    L V   TL+ R                ++E VL        ++++L  G G
Sbjct: 70  GSQPFWTLDLKVTHDTLVPRPD-----------TEILIETVLKLELDSTSNVVDLGTGTG 118

Query: 222 NFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
             +L LA  R   +V A +I +P++E A+ N   + + +VK    +  +  +    +   
Sbjct: 119 AIALALASERPQWKVTATDIYQPTLEVAQENAIRHGLTHVKFACGAWFDALEKQFFDLIV 178

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +    ID      + +  +P R+ + D 
Sbjct: 179 SNPPYIDPEDVHMQMLKSEPERALIADK 206


>gi|297544803|ref|YP_003677105.1| hypothetical protein Tmath_1380 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842578|gb|ADH61094.1| protein of unknown function Met10 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 391

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 31/150 (20%)

Query: 210 QGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
             ++L+ +   G+F++  L     RV  V+I++ ++E A+ N+  N        V  ++ 
Sbjct: 217 DAEVLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEMAKKNVELNGYQGRCNFVCDNA- 275

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYISCNPD 326
                      F+ L+  D    +F TI +DPP      +     ++ Y  I     N  
Sbjct: 276 -----------FDILRRYDKEGRKFDTIILDPPAFTKSKETVKDALRGYKEI-----N-- 317

Query: 327 SLCRDLSILSTTHTI------ERLALFDQF 350
              R L IL     +      + +   D F
Sbjct: 318 --LRALKILREGGFLITCSCSQHIKP-DMF 344


>gi|242399746|ref|YP_002995171.1| Probable tRNA/rRNA methyltransferase [Thermococcus sibiricus MM
           739]
 gi|242266140|gb|ACS90822.1| Probable tRNA/rRNA methyltransferase [Thermococcus sibiricus MM
           739]
          Length = 393

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-V 259
            L         +L+++   G F++  A    ++V+AV+ +  ++E A+ N   N V+  +
Sbjct: 207 ALEKYIKGGEKVLDVFTYTGGFAIHAAVAGAEKVIAVDKSPAAIEQAKENAKLNDVDGKM 266

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             +  S+    + M++               +F  + +DPP     +  + 
Sbjct: 267 DFLVGSAFSIMEKMQK------------KGEKFDIVILDPPAFVQHEKDLK 305


>gi|52841423|ref|YP_095222.1| hypothetical protein lpg1190 [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|148358776|ref|YP_001249983.1| hypothetical protein LPC_0657 [Legionella pneumophila str. Corby]
 gi|52628534|gb|AAU27275.1| SAM-dependent methyltransferase [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|148280549|gb|ABQ54637.1| hypothetical protein LPC_0657 [Legionella pneumophila str. Corby]
          Length = 390

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +L+LY   G F+L  A+     V AV+ +  ++E A+ N   NH+N ++ ++
Sbjct: 216 AKLSRGKRVLDLYTFTGGFALHAAKAGALHVTAVDSSVQAIEQAKNNAVLNHLNTIEFIK 275

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
             ++E+ +                 +  +  + +DPP+       +   + Y   L+
Sbjct: 276 ADAREYLK----------------MAGEYDVVILDPPKLVPSQKHLQQAKNYYRFLH 316


>gi|296109907|ref|YP_003616856.1| methyltransferase small [Methanocaldococcus infernus ME]
 gi|295434721|gb|ADG13892.1| methyltransferase small [Methanocaldococcus infernus ME]
          Length = 196

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 21/116 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++E V       + ++L+L CG G   + LA    +VL V+I + +++ A+ N+  N++ 
Sbjct: 47  LIETV---EVNKEDEILDLGCGYGAIGIALADEVKKVLMVDINRRALKLAKENVKLNNIK 103

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++               R  +  +++D    +F  I  +PP     D    +V 
Sbjct: 104 NAEV---------------RFSDLYENVD---EKFDKIITNPPIRAGKDVVKKIVS 141


>gi|189424156|ref|YP_001951333.1| hypothetical protein Glov_1090 [Geobacter lovleyi SZ]
 gi|189420415|gb|ACD94813.1| protein of unknown function Met10 [Geobacter lovleyi SZ]
          Length = 391

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 27/137 (19%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
           +L        D+L+ +C +G+++          VL ++I++ +V  A  N A N + + V
Sbjct: 209 LLLQAISKDTDVLDCFCYSGSWAAHAGFFGARSVLGLDISERAVALAGRNAALNGLSDRV 268

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVGMVQA 314
                 +            F+RL+ + +    F  + +DPP     R  L +AT G +  
Sbjct: 269 SFEECDA------------FDRLRSLKLEGRSFGVVVMDPPAFVKNRKNLAEATKGYITI 316

Query: 315 YPHIL-------Y-ISC 323
               L       Y ISC
Sbjct: 317 NRRALELLEPGGYLISC 333


>gi|289578528|ref|YP_003477155.1| hypothetical protein Thit_1332 [Thermoanaerobacter italicus Ab9]
 gi|289528241|gb|ADD02593.1| protein of unknown function Met10 [Thermoanaerobacter italicus Ab9]
          Length = 391

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 31/150 (20%)

Query: 210 QGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
           + ++L+ +   G+F++  L     RV  V+I++ ++E A+ N+  N        V  ++ 
Sbjct: 217 EAEVLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEMAKKNVELNGYQGRCNFVCDNA- 275

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYISCNPD 326
                      F+ L+  D    +F TI +DPP      +     ++ Y  I     N  
Sbjct: 276 -----------FDILRRYDKEGRKFDTIILDPPAFTKSKETVKDALRGYKEI-----N-- 317

Query: 327 SLCRDLSILSTTHTI------ERLALFDQF 350
              R L IL     +      + +   D F
Sbjct: 318 --LRALKILREGGFLITCSCSQHIKP-DMF 344


>gi|229083421|ref|ZP_04215769.1| hypothetical protein bcere0022_1010 [Bacillus cereus Rock3-44]
 gi|228699854|gb|EEL52491.1| hypothetical protein bcere0022_1010 [Bacillus cereus Rock3-44]
          Length = 213

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++E A+ N A N ++NV+I 
Sbjct: 68  QMPDIKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALELAKENAANNKIDNVRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G       + +A  H++
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKHIVHEILEKAVDHLV 167


>gi|57641608|ref|YP_184086.1| N5-glutamine methyltransferase, HemK family [Thermococcus
           kodakarensis KOD1]
 gi|57159932|dbj|BAD85862.1| N5-glutamine methyltransferase, HemK family [Thermococcus
           kodakarensis KOD1]
          Length = 194

 Score = 59.3 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L++  G G  +L+LAR    VL V+I   +VE AR N   N + NV+ 
Sbjct: 39  LDMGTGTGIIALLLARKARWVLGVDINPLAVELARENARINGIINVEF 86


>gi|327400909|ref|YP_004341748.1| hypothetical protein Arcve_1022 [Archaeoglobus veneficus SNP6]
 gi|327316417|gb|AEA47033.1| protein of unknown function Met10 [Archaeoglobus veneficus SNP6]
          Length = 277

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A        +L ++ G G F++V+A+      V+ VE+   +VE  R N+  N V NVK
Sbjct: 114 IAKLVKPGERVLVMFAGVGPFAIVIAKLAKPSEVVGVELNPAAVEYFRRNVELNKVENVK 173

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +     +E    +    +   +    I         +
Sbjct: 174 VYGGDVREIVPKLEGGFDRVLMPSPQIAESFVDVAAM 210


>gi|300914495|ref|ZP_07131811.1| Protein of unknown function methylase putative [Thermoanaerobacter
           sp. X561]
 gi|307724269|ref|YP_003904020.1| hypothetical protein Thet_1126 [Thermoanaerobacter sp. X513]
 gi|320116164|ref|YP_004186323.1| hypothetical protein Thebr_1366 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|300889430|gb|EFK84576.1| Protein of unknown function methylase putative [Thermoanaerobacter
           sp. X561]
 gi|307581330|gb|ADN54729.1| Conserved hypothetical protein CHP00095 [Thermoanaerobacter sp.
           X513]
 gi|319929255|gb|ADV79940.1| Conserved hypothetical protein CHP00095 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 391

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 31/150 (20%)

Query: 210 QGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
             ++L+ +   G+F++  L     RV  V+I++ ++E A+ N+  N        V  ++ 
Sbjct: 217 DAEVLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEMAKKNVELNGYQERCNFVCDNA- 275

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYISCNPD 326
                      F+ L+  D  + +F T+ +DPP      +     ++ Y  I     N  
Sbjct: 276 -----------FDLLRKYDKENRKFDTVILDPPAFTKSKETVKDALRGYKEI-----N-- 317

Query: 327 SLCRDLSILSTTHTI------ERLALFDQF 350
              R L IL     +      + +   D F
Sbjct: 318 --LRALKILREGGFLITCSCSQHIKP-DMF 344


>gi|240104027|ref|YP_002960336.1| Ribosomal RNA small subunit methyltransferase C (rsmC)
           [Thermococcus gammatolerans EJ3]
 gi|239911581|gb|ACS34472.1| Ribosomal RNA small subunit methyltransferase C (rsmC)
           [Thermococcus gammatolerans EJ3]
          Length = 195

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 17/110 (15%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                +L+L CG G   +V +R  D V+  ++ K +V  AR N+  N V N ++   S  
Sbjct: 55  DRGWRVLDLGCGYGAIGIVASRFVDYVVMTDVNKRAVSIARKNLKINGVRNAEVRWGSLY 114

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           E                  +   +F +I  +PP     +    +V   P 
Sbjct: 115 E-----------------PVKGEKFDSIITNPPVHAGKEVLREIVINAPR 147


>gi|323496830|ref|ZP_08101867.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Vibrio sinaloensis DSM 21326]
 gi|323318089|gb|EGA71063.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Vibrio sinaloensis DSM 21326]
          Length = 286

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L+VA  TLI R                ++E  L      QGD+L+L  G
Sbjct: 77  IIGEREFWSLPLSVAPSTLIPRPD-----------TERLVEVALDKANLNQGDILDLGTG 125

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA      +V  +++   + + A  N     + N +    S            
Sbjct: 126 TGAIALALASELPERKVWGIDLKIDAQQLASSNADKLGITNCEFRAGS------------ 173

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                 D      +F  I  +PP
Sbjct: 174 ----WFDPVDAGTQFALIVSNPP 192


>gi|300710969|ref|YP_003736783.1| protein-L-isoaspartate O-methyltransferase [Halalkalicoccus
           jeotgali B3]
 gi|299124652|gb|ADJ14991.1| protein-L-isoaspartate O-methyltransferase [Halalkalicoccus
           jeotgali B3]
          Length = 204

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +  A  G +  +L+L CG G  +L LA    RV+  +I++  +E AR   A   +NNV+ 
Sbjct: 36  IEHADPGPEETVLDLGCGTGAIALALAPDAGRVVGRDISEGMMERAREKAAERGLNNVEF 95


>gi|217966763|ref|YP_002352269.1| protein of unknown function Met10 [Dictyoglomus turgidum DSM 6724]
 gi|217335862|gb|ACK41655.1| protein of unknown function Met10 [Dictyoglomus turgidum DSM 6724]
          Length = 395

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 15/111 (13%)

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKE 268
            ++L+++C  G FSL  L     +V+AV+ +  ++E A+ N   N  ++ ++ +  ++ +
Sbjct: 219 AEVLDVFCYTGGFSLHALKYGASKVVAVDSSGIALEIAKENAKLNGFMDRIEFIEENAFD 278

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
             +   +E               F  + +DPP        +   ++ Y  I
Sbjct: 279 LLRRFHKE------------GRSFDVVILDPPAFAKSSKNIDGALRGYKEI 317


>gi|153004357|ref|YP_001378682.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
 gi|152027930|gb|ABS25698.1| putative RNA methylase [Anaeromyxobacter sp. Fw109-5]
          Length = 408

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A    + ++L L+   G FS+  A      V+ V++ + ++  AR N  AN ++    
Sbjct: 225 VRALAAGRPEVLNLFGYTGGFSVAAALGGARHVVTVDVDRDAIALARENFRANGLDPAD- 283

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
                     A   E  F  L        RF  +  DPP        V    A     Y 
Sbjct: 284 ---------HAFASEDAFELLARYKREGRRFDLVVCDPPAFAKSQKAVDAALAG----YA 330

Query: 322 SCNPDSLC 329
           S N  +L 
Sbjct: 331 SLNRAALA 338


>gi|121535706|ref|ZP_01667510.1| protein of unknown function Met10 [Thermosinus carboxydivorans
           Nor1]
 gi|121305737|gb|EAX46675.1| protein of unknown function Met10 [Thermosinus carboxydivorans
           Nor1]
          Length = 393

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 15/109 (13%)

Query: 213 LLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFT 270
           +L+ +C  G+F++  A     RV A++I++ ++E AR N A N   +       ++    
Sbjct: 222 VLDCFCHTGSFAVHAAVYGAKRVQAIDISEMAIELARKNAALNGVADRCSFEVANA---- 277

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
                   F+ L+++     +F  + +DPP       T+    + Y  I
Sbjct: 278 --------FDALRELSDERRQFDIVILDPPAFTKSRGTLESAARGYKEI 318


>gi|167037750|ref|YP_001665328.1| hypothetical protein Teth39_1338 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040444|ref|YP_001663429.1| hypothetical protein Teth514_1811 [Thermoanaerobacter sp. X514]
 gi|256752474|ref|ZP_05493332.1| protein of unknown function Met10 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|166854684|gb|ABY93093.1| protein of unknown function Met10 [Thermoanaerobacter sp. X514]
 gi|166856584|gb|ABY94992.1| protein of unknown function Met10 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748676|gb|EEU61722.1| protein of unknown function Met10 [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 415

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 31/150 (20%)

Query: 210 QGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
             ++L+ +   G+F++  L     RV  V+I++ ++E A+ N+  N        V  ++ 
Sbjct: 241 DAEVLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEMAKKNVELNGYQERCNFVCDNA- 299

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYISCNPD 326
                      F+ L+  D  + +F T+ +DPP      +     ++ Y  I     N  
Sbjct: 300 -----------FDLLRKYDKENRKFDTVILDPPAFTKSKETVKDALRGYKEI-----N-- 341

Query: 327 SLCRDLSILSTTHTI------ERLALFDQF 350
              R L IL     +      + +   D F
Sbjct: 342 --LRALKILREGGFLITCSCSQHIKP-DMF 368


>gi|261403215|ref|YP_003247439.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
 gi|261370208|gb|ACX72957.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
          Length = 378

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           L         +L++ C  G FS+  A     V+ V+++K +++ A  N+  N++  +  +
Sbjct: 198 LERFIKEGDRVLDVCCYTGGFSVHAAIRGAEVVGVDLSKKALKTAEENMELNNIPKDKYE 257

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +  ++            F  +++      RF  + +DPP     +  + 
Sbjct: 258 FIEGNA------------FKIMEEFIEDGERFDVVILDPPAFAQTEKNLK 295


>gi|254172850|ref|ZP_04879524.1| ribosomal RNA small subunit methyltransferase C [Thermococcus sp.
           AM4]
 gi|214033006|gb|EEB73834.1| ribosomal RNA small subunit methyltransferase C [Thermococcus sp.
           AM4]
          Length = 195

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 17/110 (15%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +   +L+L CG G   +V +R  D V+  ++ + +V  AR N+  N V N ++   S  
Sbjct: 55  DMNWRVLDLGCGYGAIGIVASRFVDYVVMTDVNRRAVSIARKNLKINGVRNAEVRWGSLY 114

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           E                  +   +F +I  +PP     +    +V   P 
Sbjct: 115 E-----------------PVKGEKFDSIITNPPVHAGKEVLREIVINAPR 147


>gi|281425741|ref|ZP_06256654.1| ribosomal protein L11 methyltransferase [Prevotella oris F0302]
 gi|281400149|gb|EFB30980.1| ribosomal protein L11 methyltransferase [Prevotella oris F0302]
          Length = 287

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
             HM+   L         +L+  CG G   ++ A+     V+  +I + SVE +++NIA 
Sbjct: 136 TTHMIASTLLHLDLKDKRILDCGCGTGILGIIAAKYGAKAVVGYDIDEWSVENSQHNIAI 195

Query: 254 NHVNNVKIVRMSS 266
           N+V N++I    +
Sbjct: 196 NNVENIEIYHGDA 208


>gi|326437370|gb|EGD82940.1| hypothetical protein PTSG_03573 [Salpingoeca sp. ATCC 50818]
          Length = 1612

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 70/203 (34%), Gaps = 32/203 (15%)

Query: 132  RECAIRLRDALHARKYQIQLIGRANKTK--ICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
            +E +    DALH R +    +   +     I L  D V     +   TL  R+ + +F  
Sbjct: 1321 QELSRVAGDALHERYHVPANMTDYDVNVRVIALGEDKVLLGSQLTAETLS-RRHKQAF-- 1377

Query: 190  PNAGINVHMLEWVL--AATKGIQGDLLELYCGNGNFSL-VLARHFDRV--LAVEIAKPSV 244
             N       + ++L   A  G    +L+ +CG+    L  LA     +    V+ +  ++
Sbjct: 1378 VNHVTTRSNIAYILFALARVGPGATVLDPFCGSATILLEALAASGGSITCHGVDYSPKAI 1437

Query: 245  EAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--- 300
              A  N      ++  +  +  ++  T+                    F  I  +PP   
Sbjct: 1438 RGATQNAKMEGVLDKCRFHKGDARTLTKLF--------------EPASFDAIITNPPWGV 1483

Query: 301  RSGLDDATVGM----VQAYPHIL 319
            RSG     V +    +Q    I+
Sbjct: 1484 RSGQSTDLVQLYTIFLQDAARII 1506


>gi|258511431|ref|YP_003184865.1| hypothetical protein Aaci_1451 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478157|gb|ACV58476.1| Protein of unknown function methylase putative [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 413

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 15/111 (13%)

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKE 268
             +L+ +C  G F++  L        AV+I+  +VE AR N   N  ++       ++  
Sbjct: 237 AHVLDCFCHTGAFAVHALHYGAAHGTAVDISADAVELARQNARRNGVLDRADFAVANA-- 294

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
                     F+ L++ D    R+  + +DPP       ++    + Y  I
Sbjct: 295 ----------FDYLREQDARGARYDVVILDPPAFAKSRQSIESAARGYKEI 335


>gi|239917403|ref|YP_002956961.1| putative methyltransferase [Micrococcus luteus NCTC 2665]
 gi|281414112|ref|ZP_06245854.1| putative methyltransferase [Micrococcus luteus NCTC 2665]
 gi|239838610|gb|ACS30407.1| putative methyltransferase [Micrococcus luteus NCTC 2665]
          Length = 187

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA- 253
             +  W+ A        +L+LY G+G       +R    VL VE  + +V A R N A  
Sbjct: 31  EALFSWLEARDWLDGTAVLDLYAGSGALGCEAASRGAASVLLVERDRKAVTACRANAALV 90

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N      +VR+ +    QA+  E            +     I  DPP          +++
Sbjct: 91  NRARGADVVRVRAGSVEQALAAE------------AAPVDLILADPPYPVAGPPLEAVLE 138

Query: 314 A 314
           A
Sbjct: 139 A 139


>gi|261253597|ref|ZP_05946170.1| Polypeptide chain release factor methylase [Vibrio orientalis CIP
           102891]
 gi|260936988|gb|EEX92977.1| Polypeptide chain release factor methylase [Vibrio orientalis CIP
           102891]
          Length = 286

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 34/175 (19%)

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D       +   D L  R+   + +       I  +R++    L V+  TLI R      
Sbjct: 50  DKILDAQQLAAFDDLLQRRLTGEPVAY-----IVGEREFWSLPLKVSPTTLIPRPD---- 100

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVE 245
                     ++E  L     + GD+L+L  G G  +L LA      +V  +++ + + +
Sbjct: 101 -------TERLVEIALDKAMQMDGDILDLGTGTGAIALALASELPQRQVTGIDLKQDAQQ 153

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A+ N +A +++N + +  S                  +       F  I  +PP
Sbjct: 154 LAQSNASALNLSNTQFLAGS----------------WFEPLAAGTEFALIVSNPP 192


>gi|312622544|ref|YP_004024157.1| methyltransferase type 12 [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203011|gb|ADQ46338.1| Methyltransferase type 12 [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 389

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 85/264 (32%), Gaps = 44/264 (16%)

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS----DQAIVTL 121
           +  E + ID+F            E   +I      R    + D+L           +V  
Sbjct: 67  RKNEEINIDFFRKRV----QDAWEYRKSIGYTQNCRLIFAEADFLPGLIVDKFGDVLVMQ 122

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI---------CLDRDYVDERLT 172
              + +D    +    L + ++ +   I     A   +I               V+  + 
Sbjct: 123 TLSKGVDKFKDKLVEILVEVVNPK--AIYERNDARVREIEGLDLRKGFLYGSSPVEVEIE 180

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEW----VLAATKGIQGDLLELYCGNGNFSLVLA 228
             G  +I           N     + L+     V          +L+ +C  G F++  A
Sbjct: 181 ENGIKMIVDIE-------NGQKTGYFLDQKENRVAIRNFVKDKVILDCFCHTGGFTINAA 233

Query: 229 R-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
           +    +V+ V+I+  ++E A  N   N V +  + V  +             F+ L ++D
Sbjct: 234 KFGASKVIGVDISDTAIEQAVKNAKLNEVESKCEFVVANV------------FDYLNELD 281

Query: 287 IHSYRFKTIFVDPPRSGLDDATVG 310
               ++  I +DPP       T+ 
Sbjct: 282 DKKEKYDMIILDPPAFAKSIHTLE 305


>gi|295109242|emb|CBL23195.1| SAM-dependent methyltransferase [Ruminococcus obeum A2-162]
          Length = 400

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G+F+L         V  V+ ++ +V  A+ N   N ++
Sbjct: 212 YNRLAIQKLCKDARVLDCFTHTGSFALNAGIAGAKEVTGVDASELAVHQAQENAKLNGLD 271

Query: 258 -NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAY 315
             VK +     E    +  E E            ++  + +DPP       +    V+ Y
Sbjct: 272 KTVKFICEDVFELLPKLEEEGE------------KYDVVILDPPAFTKSRSSVKNAVKGY 319

Query: 316 PHI 318
             I
Sbjct: 320 REI 322


>gi|222529209|ref|YP_002573091.1| hypothetical protein Athe_1218 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456056|gb|ACM60318.1| protein of unknown function Met10 [Caldicellulosiruptor bescii DSM
           6725]
          Length = 389

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 85/264 (32%), Gaps = 44/264 (16%)

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS----DQAIVTL 121
           +  E + ID+F            E   +I      R    + D+L           +V  
Sbjct: 67  RKNEEINIDFFRKRV----QDAWEYRKSIGYTQNCRLIFAEADFLPGLIVDKFGDVLVMQ 122

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI---------CLDRDYVDERLT 172
              + +D    +    L + ++ +   I     A   +I               V+  + 
Sbjct: 123 TLSKGVDKFKDKLVEILVEVVNPK--AIYERNDARVREIEGLDLRKGFLYGSSPVEVEIE 180

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEW----VLAATKGIQGDLLELYCGNGNFSLVLA 228
             G  +I           N     + L+     V          +L+ +C  G F++  A
Sbjct: 181 ENGIKMIVDIE-------NGQKTGYFLDQKENRVAIRNFVKDKVILDCFCHTGGFTINAA 233

Query: 229 R-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
           +    +V+ V+I+  ++E A  N   N V +  + V  +             F+ L ++D
Sbjct: 234 KFGASKVIGVDISDTAIEQAVKNAKLNEVESKCEFVVANV------------FDYLNELD 281

Query: 287 IHSYRFKTIFVDPPRSGLDDATVG 310
               ++  I +DPP       T+ 
Sbjct: 282 DKKEKYDMIILDPPAFAKSIHTLE 305


>gi|169836566|ref|ZP_02869754.1| hypothetical protein cdivTM_05575 [candidate division TM7
           single-cell isolate TM7a]
          Length = 33

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 324 NPDSLCRDLSILSTT-HTIERLALFDQFPYTRH 355
           NP +  RD+ IL+   + ++++   D FP T H
Sbjct: 1   NPATFARDVKILAENEYVLKKITPVDMFPQTAH 33


>gi|18311815|ref|NP_558482.1| methylase, conjectural [Pyrobaculum aerophilum str. IM2]
 gi|18159224|gb|AAL62664.1| methylase, conjectural [Pyrobaculum aerophilum str. IM2]
          Length = 204

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 15/171 (8%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A  +G+  ++L+L CG G FSL  A     RVL ++I   +++ A+       +  V  +
Sbjct: 42  AYMRGLLTEVLDLGCGTGRFSLAAAAMGARRVLCIDIDPEAIQIAKEAAEDLGLGAVDFL 101

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
              +            F                F+    +      V  +   P + Y+S
Sbjct: 102 VADATRLWLGRSFAVVFQNPPFGIWSGRGSDIAFLQ--TALRHGEVVYTIHKLPTLNYVS 159

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQFPYTRH------MECGVLLVRKPS 367
              + L   L +L     +  +     + +  H      +E  + +VR+ +
Sbjct: 160 AKAEELGGVLKVLERA--VITIKP--MYRH--HRKRLHKVEVFLAVVRRKA 204


>gi|320531243|ref|ZP_08032224.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           sp. oral taxon 171 str. F0337]
 gi|320136545|gb|EFW28512.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Actinomyces
           sp. oral taxon 171 str. F0337]
          Length = 262

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 63/231 (27%), Gaps = 31/231 (13%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
             QLA K  R+  ++       L      S P  +R +A+  +          + D    
Sbjct: 30  PDQLAAKQSRVAALLADHIPSGLWQAPAASAPTGFRNKAKMAVAGTSAHPTLGILD-GAG 88

Query: 69  ERMRIDYFMPGSLLINALMIEMMATI-------RLEPLLRAKLFQIDYLTSQSDQAIV-- 119
             + +         I A +  +   I          P  R +L  +    S  D  +V  
Sbjct: 89  CGVDLRTCPLHVPAIEAALPVLAGLITELGLRPYDVPTRRGELKYVLVTASPDDDLMVRF 148

Query: 120 ---TLIYHRLLDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
              +  +   L  A  +   RL     A    +   Q +    +  +    D +  RL++
Sbjct: 149 VLRSRHHLERLRAALPDLHRRLPQLAVAAVNIQSVHQAVIEGPEEIVLTQEDRLLMRLSL 208

Query: 174 AG-------------RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
                            L       SF Q N  +   +        +  Q 
Sbjct: 209 PSPEHGGRAGRRADGVELSLYLPTRSFFQTNTAVAEALYATARDWAQEAQP 259


>gi|300702901|ref|YP_003744502.1| n5-glutamine methyltransferase, modifies release factors rf-1 and
           rf-2 [Ralstonia solanacearum CFBP2957]
 gi|299070563|emb|CBJ41858.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Ralstonia solanacearum CFBP2957]
          Length = 281

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 26/152 (17%)

Query: 173 VAGRTLIYRQIENSFT----QPNAGI------NVHMLEWVLAATKGIQ-GDLLELYCGNG 221
           +AG  + Y   E  F     Q    +         ++E  L   +     D+L+L  G+G
Sbjct: 57  LAGEPMAYLLGEREFFGRLFQVTPAVLIPRPDTELLVEQALDRIEDRDAPDVLDLGTGSG 116

Query: 222 NF--SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
               ++ LAR   RV A + +  ++  A  N  A    NV +                 +
Sbjct: 117 IIAVTIALARRDARVWATDASADALAVAAGNAQALGAANVHVAHGD------------WY 164

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             L + D     F  I  +PP     DA +G 
Sbjct: 165 GALPESDAPPA-FDLIVSNPPYIASADAHLGQ 195


>gi|47570394|ref|ZP_00241034.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus G9241]
 gi|47552936|gb|EAL11347.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus G9241]
          Length = 199

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A  N A N + NV I + 
Sbjct: 56  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAEENAANNRIGNVHIFQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  +++
Sbjct: 116 SVYENVDGMYAA------------------ILSNPPIRAGKDIVHEILEKAVEYLV 153


>gi|330863232|emb|CBX73358.1| protein methyltransferase hemK [Yersinia enterocolitica W22703]
          Length = 279

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 20/105 (19%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V+ V+I   +V  AR+N     
Sbjct: 93  LVEQALAHLPATPCRILDLGTGTGAIALALASERPDFAVMGVDIKADAVALARHNAKKLA 152

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +NNV  ++ S                    D  S RF  I  +PP
Sbjct: 153 INNVDFLQSS------------------WFDSVSGRFTLIVSNPP 179


>gi|160879491|ref|YP_001558459.1| putative RNA methylase [Clostridium phytofermentans ISDg]
 gi|160428157|gb|ABX41720.1| putative RNA methylase [Clostridium phytofermentans ISDg]
          Length = 400

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 25/201 (12%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI- 183
           RLL +   E  + +R        +++      + K  L   + D  + +    + Y    
Sbjct: 140 RLLKEILLEDGVIIRGVYERSDAKVRTQEGMERIKGFLGEPF-DTNVLITENGVKYYVDV 198

Query: 184 ----ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVE 238
               +  F              +          +L+ +   G+F+L         VL ++
Sbjct: 199 EDGQKTGFF------LDQKYNRLAIQRICKDAKVLDCFTHTGSFALNAGIGGAKEVLGID 252

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            ++  V  AR N   N +   KIVR   ++  + + R  E            +F  I +D
Sbjct: 253 ASELGVNQARKNAELNGLE--KIVRFQCEDVFELLPRLEE---------SGEKFDVIILD 301

Query: 299 PPRSGLDD-ATVGMVQAYPHI 318
           PP       +    ++ Y  I
Sbjct: 302 PPAFTKSRNSVKNAIKGYREI 322


>gi|219115307|ref|XP_002178449.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410184|gb|EEC50114.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 620

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 25/227 (11%)

Query: 117 AIVTLIYHRL---LDDAWRECAIRLRDALHARKYQIQLIGRANKTK-----ICLDRDYVD 168
           AIV  + H L    D  WR    RLR   +  +         +        + +D D   
Sbjct: 334 AIVAALRHVLPSSFDIVWRTTGSRLRQDGYQSESNENNKKTIDDEDQDEHAMVIDSDQPP 393

Query: 169 ER-LTVAGRTLIYRQIENSFTQPNAGINVHMLEW----VLAATKGIQGDLLELYCGNGNF 223
           +  +     ++ YR    +    N        +      L AT      +L+L C +G F
Sbjct: 394 DTPVLSLENSVAYRVYPYA----NGQKTGVYCDQRDNRALLATLCRDKRVLDLCCYHGGF 449

Query: 224 SL--VLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRREREF 279
           +L  +L  H   V  V+ +  ++ A   N+  N +  +  + V+     F QA    RE+
Sbjct: 450 ALNAILNGHASFVTGVDSSADAIAACHENVRLNEIGDDRTEFVKDDVTHFLQASFGTREY 509

Query: 280 NRLKDIDIHSYRFKTIFVDPPRS---GLDDATVGMVQAYPHILYISC 323
           + +  +D          +D  R    GL+   + +V      L+++C
Sbjct: 510 DVVV-LDPPKLAPSVATLDKARRKYHGLNRDAIKVVNREKGGLFLTC 555


>gi|170290684|ref|YP_001737500.1| SAM-dependent methyltransferase [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170174764|gb|ACB07817.1| SAM-dependent methyltransferase [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 387

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +N   +E +     G    +L+L+   G F +  A    RV AVE +  ++     N+  
Sbjct: 207 MNRLKVERLA----GPGDKVLDLFSYTGGFGIHAALFGARVTAVEESDYAIAEMNENMRL 262

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N V  ++ +R  ++EF +      +   +        + K          L+ + +  V 
Sbjct: 263 NSVE-MRAIRSRAREFLETDDDLYDIVIVDPPAFAPSKEKIDAARRAYVALNSSAMSKVA 321

Query: 314 AYPHILYISC 323
               I+  SC
Sbjct: 322 PGGIIITYSC 331


>gi|91228928|ref|ZP_01262826.1| HemK protein [Vibrio alginolyticus 12G01]
 gi|91187511|gb|EAS73845.1| HemK protein [Vibrio alginolyticus 12G01]
          Length = 284

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 38/184 (20%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +     + L+   +       DAL  R+   + +       I  +R++      V+  TL
Sbjct: 45  LLTWPEKALEAEQKSQF----DALLERRLTGEPVAY-----IIGEREFWSLPFKVSPSTL 95

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLA 236
           I R                ++E  L  T    G +L+L  G G  ++ LA      +V+ 
Sbjct: 96  IPRPD-----------TERLVEVALDKTYEQTGPVLDLGTGTGAIAIALASEMPKRQVMG 144

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           V++ + +   A YN    ++ NV   + S                  +      +F  I 
Sbjct: 145 VDLKQEAKALAEYNAEQLNIKNVTFAQGS----------------WFEPITEGTKFALIV 188

Query: 297 VDPP 300
            +PP
Sbjct: 189 SNPP 192


>gi|1246430|emb|CAA48793.1| orfB [Clostridium acetobutylicum]
          Length = 298

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L        ++ ++  G+G  ++  A+ +  +VL V++   +V+AA+ NI  
Sbjct: 162 TTRMCIQALERYVNEDAEVFDIGTGSGILAIAAAKLNAKKVLGVDLDSVAVKAAKENIQY 221

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N+VNN++I+  +  E  Q        N + D+
Sbjct: 222 NNVNNIEILHGNLMEVVQGKADIIVANIIADV 253


>gi|541428|pir||S41759 ribosomal protein L11 methyltransferase (EC 2.1.1.-) - Clostridium
           acetobutylicum
          Length = 300

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L        ++ ++  G+G  ++  A+ +  +VL V++   +V+AA+ NI  
Sbjct: 162 TTRMCIQALERYVNEDAEVFDIGTGSGILAIAAAKLNAKKVLGVDLDSVAVKAAKENIQY 221

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N+VNN++I+  +  E  Q        N + D+
Sbjct: 222 NNVNNIEILHGNLMEVVQGKADIIVANIIADV 253


>gi|15894566|ref|NP_347915.1| ribosomal protein L11 methyltransferase [Clostridium acetobutylicum
           ATCC 824]
 gi|18314338|sp|P45558|PRMA_CLOAB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|15024213|gb|AAK79255.1|AE007641_1 SAM-dependent methyltransferase [Clostridium acetobutylicum ATCC
           824]
 gi|325508698|gb|ADZ20334.1| ribosomal protein L11 methyltransferase [Clostridium acetobutylicum
           EA 2018]
          Length = 311

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L        ++ ++  G+G  ++  A+ +  +VL V++   +V+AA+ NI  
Sbjct: 162 TTRMCIQALERYVNEDAEVFDIGTGSGILAIAAAKLNAKKVLGVDLDSVAVKAAKENIQY 221

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N+VNN++I+  +  E  Q        N + D+
Sbjct: 222 NNVNNIEILHGNLMEVVQGKADIIVANIIADV 253


>gi|289192748|ref|YP_003458689.1| methyltransferase small [Methanocaldococcus sp. FS406-22]
 gi|288939198|gb|ADC69953.1| methyltransferase small [Methanocaldococcus sp. FS406-22]
          Length = 197

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 15/118 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V         D+L+L CG G   + LA     V   +I + +++ A+ NI  N++     
Sbjct: 48  VENVIVDKDDDILDLGCGYGVIGIALADEVKSVTMADINRRAIKLAKENIKLNNLEGYD- 106

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +R+   +  +              ++    +  I  +PP     +    +++    IL
Sbjct: 107 IRVIHSDLYE--------------NVRDREYDKIITNPPIRAGKEVLHKIIKEGKEIL 150


>gi|229089232|ref|ZP_04220513.1| hypothetical protein bcere0021_870 [Bacillus cereus Rock3-42]
 gi|228694071|gb|EEL47753.1| hypothetical protein bcere0021_870 [Bacillus cereus Rock3-42]
          Length = 164

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + 
Sbjct: 21  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQS 80

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  H++
Sbjct: 81  SVYENVDGMYAA------------------ILSNPPIRAGKDVVHEILEKAVEHLV 118


>gi|261403492|ref|YP_003247716.1| methyltransferase small [Methanocaldococcus vulcanius M7]
 gi|261370485|gb|ACX73234.1| methyltransferase small [Methanocaldococcus vulcanius M7]
          Length = 196

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 15/112 (13%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
               D+L+L CG G   + LA     V   +I + +++ A+ NI  N++ N   +R+   
Sbjct: 54  DKDDDILDLGCGYGVIGIALADEVKSVTMADINRRAIKLAKENIKLNNLENYD-IRVVHS 112

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +  +              ++   ++  I  +PP     +    +++    +L
Sbjct: 113 DLYE--------------NVKDRKYDKIITNPPIRAGKEVLHRIIEEGKELL 150


>gi|320457825|dbj|BAJ68446.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 187

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    + GD L+L CG G  +L LA       V AV++ + +++    N  AN   N+  
Sbjct: 22  APEPPLAGDFLDLGCGWGPIALTLAFESPEANVWAVDVNERALDLTHANAQANGRTNIHT 81

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            ++           +  F      D+    F  I+ +PP     +A   ++ A+
Sbjct: 82  AQVDESSTPLPAENQPAFCETVPGDLT---FDVIWSNPPIRVGKEALHTLLMAW 132


>gi|213691732|ref|YP_002322318.1| methyltransferase small [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523193|gb|ACJ51940.1| methyltransferase small [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 218

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    + GD L+L CG G  +L LA       V AV++ + +++    N  AN   N+  
Sbjct: 53  APEPPLAGDFLDLGCGWGPIALTLAFESPEANVWAVDVNERALDLTHANAQANGRTNIHT 112

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            ++           +  F      D+    F  I+ +PP     +A   ++ A+
Sbjct: 113 AQVDESSTPLPAENQPAFCETVPGDLT---FDVIWSNPPIRVGKEALHTLLMAW 163


>gi|20089093|ref|NP_615168.1| hypothetical protein MA0195 [Methanosarcina acetivorans C2A]
 gi|19913956|gb|AAM03648.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 402

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 16/111 (14%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             L ++ CG G  ++  A+  + V AVEI    +E A+ N     ++NVK +   + +  
Sbjct: 93  KTLADISCGIGGQTVFFAQQCEFVYAVEIDPKKIEYAKQNCEMYGLDNVKFICGDALD-- 150

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHIL 319
                         +         +F DP R   +D      +    P +L
Sbjct: 151 ------------PKVIEQIPAVDVVFSDPFRPAEEDRRQVSSLEPGIPKVL 189


>gi|4104516|gb|AAD02056.1| unknown [Clostridium acetobutylicum DSM 1731]
          Length = 244

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L        ++ ++  G+G  ++  A+ +  +VL V++   +V+AA+ NI  
Sbjct: 95  TTRMCIQALERYVNEDAEVFDIGTGSGILAIAAAKLNAKKVLGVDLDSVAVKAAKENIQY 154

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N+VNN++I+  +  E  Q        N + D+
Sbjct: 155 NNVNNIEILHGNLMEVVQGKADIIVANIIADV 186


>gi|302143105|emb|CBI20400.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 92/253 (36%), Gaps = 20/253 (7%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLR 139
            L+   +       ++  +L A L +   + S  +  +V  I H  L D+      +  +
Sbjct: 69  ELVKCKLTLFYNYWQMNEILEALLPEGMIVPSAFE--MVGHIAHLNLRDEHLPYKKLIAK 126

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTV--AGRTLIYRQIENS-FTQP------ 190
             L   K +IQ +   NKT   +  DY   +L V    R+L+   IEN    Q       
Sbjct: 127 VVLDKNKPKIQTVV--NKTD-AIHNDYRTMQLEVLAGNRSLVTTVIENGMRFQVDLATVY 183

Query: 191 -NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N+ +        L         + +++ G G  ++  A+   RV A ++   ++E    
Sbjct: 184 WNSRLATE--RQRLLNCFTRNDVVCDVFSGVGPIAISAAKKVKRVYANDLNPYAIEYLES 241

Query: 250 NIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           N   N +   +K+  M  + F  AM    +   +  + ++       F+D  R      +
Sbjct: 242 NSVLNKLERKIKVFNMDGRRFINAMFTSDKAESITQVVMNLPNDAAEFLDAFRGIFRKKS 301

Query: 309 VGMVQAYPHI-LY 320
                  P I +Y
Sbjct: 302 RDKQLKLPMIHVY 314


>gi|289705869|ref|ZP_06502249.1| RNA methyltransferase, RsmD family [Micrococcus luteus SK58]
 gi|289557412|gb|EFD50723.1| RNA methyltransferase, RsmD family [Micrococcus luteus SK58]
          Length = 187

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 7/126 (5%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA- 253
             +  W+ A        +L+LY G+G       +R    VL VE  + +V A R N A  
Sbjct: 31  EALFSWLEARDWLDGTAVLDLYAGSGALGCEAASRGAASVLLVERDRKAVTACRANAALV 90

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N      +VR+ +    QA+  E        +D+           PP   + +A    + 
Sbjct: 91  NRARGADVVRVRAGSVEQALAAEA-----APVDLILADPPYPVAGPPLEAVVEAAAERLA 145

Query: 314 AYPHIL 319
               ++
Sbjct: 146 PGGLLV 151


>gi|88704042|ref|ZP_01101757.1| protoporphyrinogen oxidase [Congregibacter litoralis KT71]
 gi|88701869|gb|EAQ98973.1| protoporphyrinogen oxidase [Congregibacter litoralis KT71]
          Length = 280

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 57/173 (32%), Gaps = 30/173 (17%)

Query: 130 AWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           AW +  +    A H R    Q         +  +R++    L V   TLI R        
Sbjct: 40  AWPDAEVEASAAEHYRHLLAQRASGIPVAYLLGEREFWSLTLRVNDATLIPRPD------ 93

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAA 247
                   ++E  L         +L+L  G+G  +L LA  R   ++  VE +  ++E A
Sbjct: 94  -----TELLVEQALKLDLSPGASVLDLGTGSGAIALALASERPRWQITGVEHSPEALEIA 148

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           R N     + +V   R                       +   RF  I  +PP
Sbjct: 149 RTNGKRLGLKDVAFHRSD-----------------WFTAVRGQRFDLIVSNPP 184


>gi|134299906|ref|YP_001113402.1| PUA domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134052606|gb|ABO50577.1| SAM-dependent methyltransferase [Desulfotomaculum reducens MI-1]
          Length = 418

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 15/110 (13%)

Query: 212 DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
            +L+ +C  G FS+   +     VL ++IA P++E AR N   N   +       +S + 
Sbjct: 246 RVLDCFCHTGTFSMYATKYGAKEVLGLDIAAPALEVARVNAQLNGYGDRCTFKECNSFDE 305

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
            +AM R  E            +F  + +DPP        +   ++ Y  I
Sbjct: 306 LRAMERAEE------------KFDVVILDPPAFTKSRKAIEGAIRGYKEI 343


>gi|220915318|ref|YP_002490622.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953172|gb|ACL63556.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 197

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            LA    I GD+L++ CG G  +L LA    RVL V+ +  ++  A    AA  +  V  
Sbjct: 31  ALAEAGEIVGDVLDVGCGTGENALHLAALGKRVLGVDGSPTAIARALEKAAARGLQ-VPF 89

Query: 262 VRMSSKEFTQAMRR 275
           +   + +     RR
Sbjct: 90  LVADALDLKALHRR 103


>gi|157370233|ref|YP_001478222.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Serratia proteamaculans 568]
 gi|157321997|gb|ABV41094.1| modification methylase, HemK family [Serratia proteamaculans 568]
          Length = 276

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L        ++L+L  G G  +L LA  R   RV  V++   +V  A++N     
Sbjct: 98  LVELALERLPSSSCNILDLGTGTGAIALALASERQDCRVTGVDLQPEAVALAQHNAQKLA 157

Query: 256 VNNVKIVRMS 265
           + N + ++ S
Sbjct: 158 IGNAQFLQGS 167


>gi|322433866|ref|YP_004216078.1| hypothetical protein AciX9_0224 [Acidobacterium sp. MP5ACTX9]
 gi|321161593|gb|ADW67298.1| hypothetical protein AciX9_0224 [Acidobacterium sp. MP5ACTX9]
          Length = 423

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L +  AA     G  L++    G F+L LA+  DRV  V+ ++ ++E A  N+A N    
Sbjct: 239 LNYAAAARYA-HGRALDVCTYQGGFALHLAQTCDRVTGVDTSRAALEVADANLALN---- 293

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F+ L++ +    RF TI +DPP        + 
Sbjct: 294 ------PHLKARTDWMEADAFDLLREYESTGERFDTIVLDPPAFAKSQRALE 339


>gi|296454450|ref|YP_003661593.1| methyltransferase small [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183881|gb|ADH00763.1| methyltransferase small [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 218

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    + GD L+L CG G  +L LA       V AV++ + +++    N  AN   N+  
Sbjct: 53  APEPPLTGDFLDLGCGWGPIALTLAFESPEANVWAVDVNERALDLTHANAQANGRTNIHT 112

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            ++           +  F      D+    F  I+ +PP     +A   ++ A+
Sbjct: 113 AQVDESSTPLPAENQPAFCETVPGDLT---FDAIWSNPPIRVGKEALHTLLMAW 163


>gi|126179788|ref|YP_001047753.1| methyltransferase small [Methanoculleus marisnigri JR1]
 gi|125862582|gb|ABN57771.1| methyltransferase [Methanoculleus marisnigri JR1]
          Length = 203

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 16/114 (14%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEA 246
            Q  A +   +L             + +L CG G  +   A      V  ++I   ++  
Sbjct: 26  YQTPAPVAARLLHHAAMQGAIEGRAVCDLGCGTGILACGAALLGASAVTGIDIDPAAIAV 85

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           AR N     V  V+      ++               D+D  +    T+ ++PP
Sbjct: 86  ARRNAELLGVT-VEFQVADVRD--------------PDLDREALACDTVVMNPP 124


>gi|56552785|ref|YP_163624.1| SAM-dependent methyltransferase-like protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241762475|ref|ZP_04760552.1| SAM-dependent methyltransferase-like protein [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|56544359|gb|AAV90513.1| SAM-dependent methyltransferase-like protein [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|241372977|gb|EER62644.1| SAM-dependent methyltransferase-like protein [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 291

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 25/185 (13%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R   D W+     +  +      +  L     K    L      E +    +   +R + 
Sbjct: 46  RPAQDNWQADGEFIGASDEDGGGRWHLKPYVPKDGWLLQ----WEDVCFLAQNTSFRHL- 100

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F    A     M E V         ++L L+   G  SL LA    +V  V+ +K SV
Sbjct: 101 -AFFPDMAPQWAWMRERVTE-----DAEILNLFGYTGVGSLALAAKGGKVTHVDASKKSV 154

Query: 245 EAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            +A+ N   + + +  ++ +   + +FT      RE  R +       R+  I +DPP+ 
Sbjct: 155 ASAKNNAELSGLTDKPIRWIVDDAVKFT-----AREVRRHR-------RYDGILMDPPKF 202

Query: 303 GLDDA 307
           G   A
Sbjct: 203 GRGPA 207


>gi|229170952|ref|ZP_04298553.1| hypothetical protein bcere0006_880 [Bacillus cereus MM3]
 gi|228612492|gb|EEK69713.1| hypothetical protein bcere0006_880 [Bacillus cereus MM3]
          Length = 213

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + 
Sbjct: 70  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQS 129

Query: 265 SSKEFTQAMRREREFN 280
           S  E    M      N
Sbjct: 130 SVYENVDGMYAAILSN 145


>gi|253688499|ref|YP_003017689.1| modification methylase, HemK family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755077|gb|ACT13153.1| modification methylase, HemK family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 281

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L LA  R   RV  V++   +V  A  N     
Sbjct: 98  LVEQALLRLPQKPCAVLDLGTGTGAIALALASERRDCRVTGVDVQPDAVALATKNAQQLG 157

Query: 256 VNNVKIVRMS 265
           ++N   +  S
Sbjct: 158 LDNAHFLSGS 167


>gi|52549034|gb|AAU82883.1| predicted methyltransferase [uncultured archaeon GZfos22D9]
          Length = 367

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 13/203 (6%)

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +E + +  F+     I+     +   +   P     +  I  LT   D    T   H   
Sbjct: 55  REEVGVTEFLTADFAISEPRRSIEDILGFSPAYE-IIGDIAVLTGAGDSITETNEQHVAH 113

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS- 186
               R   I++      R   ++ + R  K KI    +   E +        Y+      
Sbjct: 114 TILNRHKNIKVVAK---RISPVEGVYRNRKLKILAGENR-TETIH-KENGCRYKLDPEKV 168

Query: 187 -FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPS 243
            F   N G+        +         +++++ G G+FS+ +A+   +  V A++I   +
Sbjct: 169 YF---NPGLAGERNRVAMQVELSKNELIIDMFAGVGSFSIQIAKRAPQSIVTAIDINPDA 225

Query: 244 VEAARYNIAANHVNNVKIVRMSS 266
           +     N+  N V N++ +    
Sbjct: 226 IRYLHENMELNGVRNIEPIEGDV 248


>gi|269965454|ref|ZP_06179573.1| HemK protein [Vibrio alginolyticus 40B]
 gi|269829933|gb|EEZ84163.1| HemK protein [Vibrio alginolyticus 40B]
          Length = 284

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 38/184 (20%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +     + L+   +       DAL  R+   + +       I  +R++      V+  TL
Sbjct: 45  LLTWPEKALEAEQQAKF----DALLERRLTGEPVAY-----IIGEREFWSLPFKVSPSTL 95

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLA 236
           I R                ++E  L  T    G +L+L  G G  ++ LA      +V+ 
Sbjct: 96  IPRPD-----------TERLVEVALDKTYEQTGPILDLGTGTGAIAIALASEMPKRQVMG 144

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           V++ + +   A YN    ++ NV   + S                  +      +F  I 
Sbjct: 145 VDLKQEAKALAEYNAEQLNIKNVTFAQGS----------------WFEPITEGTKFALIV 188

Query: 297 VDPP 300
            +PP
Sbjct: 189 SNPP 192


>gi|227111331|ref|ZP_03824987.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 281

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L LA  RH  RV  V++   +V  A  N     
Sbjct: 98  LVEQALLRLPQTPCAVLDLGTGTGAIALALASERHDCRVTGVDVQPDAVALATKNAQQLG 157

Query: 256 VNNVKIVRMS 265
           + NV  +  S
Sbjct: 158 LGNVHFLSGS 167


>gi|52145117|ref|YP_081712.1| methyltransferase [Bacillus cereus E33L]
 gi|51978586|gb|AAU20136.1| conserved hypothetical protein; possible methyltransferase
           [Bacillus cereus E33L]
          Length = 199

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + 
Sbjct: 56  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNKIGNVHIFQS 115

Query: 265 SSKEFTQAMRREREFN 280
           S  E    M      N
Sbjct: 116 SVYENVDGMYAAILSN 131


>gi|332161452|ref|YP_004298029.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318605429|emb|CBY26927.1| methylase of polypeptide chain release factors [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665682|gb|ADZ42326.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
          Length = 284

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 20/105 (19%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V+ V+I   +V  AR+N     
Sbjct: 98  LVEQALAHLPATPCRILDLGTGTGAIALALASERPDFAVMGVDIKADAVALARHNAKKLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +NNV  ++ S                    D  S RF  I  +PP
Sbjct: 158 INNVDFLQSS------------------WFDSVSGRFTLIVSNPP 184


>gi|229542213|ref|ZP_04431273.1| methyltransferase small [Bacillus coagulans 36D1]
 gi|229326633|gb|EEN92308.1| methyltransferase small [Bacillus coagulans 36D1]
          Length = 200

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 32/142 (22%)

Query: 177 TLIYRQIENSF-TQPNAGINVH---------MLEWVLAATKGIQGDLLELYCGNGNFSLV 226
              +    ++F  Q + G+            +L+ V       +G +L++ CG G   L 
Sbjct: 18  DFTFTLRGHTFHFQTDQGVFSKKEVDFGSRVLLDLV--TMPETEGPVLDMGCGYGPIGLA 75

Query: 227 LARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           LA  F    V  V+I   +VE A  N A NH++NV I   +  E                
Sbjct: 76  LATSFPGRHVHMVDINTRAVELAEKNAARNHISNVSIYESNLFE---------------- 119

Query: 285 IDIHSYRFKTIFVDPP-RSGLD 305
            ++ S  F  I  +PP R+G  
Sbjct: 120 -NVKSGPFALIATNPPIRAGKQ 140


>gi|289193240|ref|YP_003459181.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
 gi|288939690|gb|ADC70445.1| Methyltransferase type 11 [Methanocaldococcus sp. FS406-22]
          Length = 277

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 135 AIRLRDALHARKYQIQLIGRANKTK--ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
             RL       K     I    K K  I  D+++  ++L++    +I R         N 
Sbjct: 1   MKRLLKYKIDIKDTWDKIKAERKGKPKITYDKEFF-KKLSIDSSNIIKR--------NNY 51

Query: 193 GINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           G     +E +    +G     +LE+  G G  ++ LA+   +V+A+E ++ ++   + N+
Sbjct: 52  GYGKKAVEILKENLEGFSNFTVLEIGTGAGTLTIPLAKEVKKVIAIEKSEMNIRLLKENL 111

Query: 252 AANHVNNVKIVRMS 265
             N + NV+I+   
Sbjct: 112 RENGIENVEIINAD 125


>gi|254246903|ref|ZP_04940224.1| hypothetical protein BCPG_01675 [Burkholderia cenocepacia PC184]
 gi|124871679|gb|EAY63395.1| hypothetical protein BCPG_01675 [Burkholderia cenocepacia PC184]
          Length = 404

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A    + D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  
Sbjct: 220 RALVAQYAAERDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAA 279

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 280 RATWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 329


>gi|154151210|ref|YP_001404828.1| protein of unknown function Met10 [Candidatus Methanoregula boonei
           6A8]
 gi|153999762|gb|ABS56185.1| protein of unknown function Met10 [Methanoregula boonei 6A8]
          Length = 292

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENS--FTQPNAGINVHMLEWVLAATKGIQGDLLE 215
           T+I          +        Y        F Q N    + M   V  +  G    + +
Sbjct: 104 TEILWGSA---GEVCHREEGYTYYLDPGRVMFAQGNRDEKMRMARLVRESPAG--ARVAD 158

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
           ++ G G F++ +A    +V A+EI   +      NIAAN +   V++     +
Sbjct: 159 MFAGIGYFAIPMAGSGAKVHAMEINPVACAYLERNIAANGLAGRVQVSCGDCR 211


>gi|229027949|ref|ZP_04184102.1| hypothetical protein bcere0028_880 [Bacillus cereus AH1271]
 gi|228733337|gb|EEL84166.1| hypothetical protein bcere0028_880 [Bacillus cereus AH1271]
          Length = 213

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N + NV I + S
Sbjct: 71  DIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRIGNVHIFQSS 130

Query: 266 SKEFTQAMRREREFN 280
             E    M      N
Sbjct: 131 VYENVDGMYAAILSN 145


>gi|107024019|ref|YP_622346.1| PUA domain-containing protein [Burkholderia cenocepacia AU 1054]
 gi|116691106|ref|YP_836729.1| PUA domain-containing protein [Burkholderia cenocepacia HI2424]
 gi|170734438|ref|YP_001766385.1| PUA domain-containing protein [Burkholderia cenocepacia MC0-3]
 gi|105894208|gb|ABF77373.1| 23S rRNA m(5)C-1962 methyltransferase / SAM-dependent
           methyltransferase [Burkholderia cenocepacia AU 1054]
 gi|116649195|gb|ABK09836.1| SAM-dependent methyltransferase / 23S rRNA m(5)C-1962
           methyltransferase [Burkholderia cenocepacia HI2424]
 gi|169817680|gb|ACA92263.1| PUA domain containing protein [Burkholderia cenocepacia MC0-3]
          Length = 404

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  
Sbjct: 220 RALVAQYAADRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAA 279

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 280 RATWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 329


>gi|307353138|ref|YP_003894189.1| hypothetical protein Mpet_0984 [Methanoplanus petrolearius DSM
           11571]
 gi|307156371|gb|ADN35751.1| protein of unknown function Met10 [Methanoplanus petrolearius DSM
           11571]
          Length = 296

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 175 GRTLIYRQIENS--FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                +R   +   F Q N      M E+V  A  G    + +++ G G F++ +A+   
Sbjct: 118 EEGYSFRLDPSKVMFAQGNREEKKRMAEYVGMAPTGE--RVADMFAGIGYFTIPMAKAGA 175

Query: 233 RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQA 272
            V A+EI   S    + NIA N V  NV       ++  + 
Sbjct: 176 FVHAMEINPVSFGYLKENIAENCVGENVTAENGDCRDLLKG 216


>gi|92113654|ref|YP_573582.1| HemK family modification methylase [Chromohalobacter salexigens DSM
           3043]
 gi|91796744|gb|ABE58883.1| [protein release factor]-glutamine N5-methyltransferase
           [Chromohalobacter salexigens DSM 3043]
          Length = 286

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 19/116 (16%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E +LA      G  L+L  G+G  +L LA  R    V+ V+    +V  A  N     
Sbjct: 100 LVEALLARMPHATGRALDLGTGSGAIALALASERPAWHVVGVDKVPGAVRLATANAERLA 159

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           ++N   +     ++  A+  E               F  I  +PP    DD  +  
Sbjct: 160 LSNATFL---VSDWFSALGNET--------------FDVIAANPPYIAEDDPHLAQ 198


>gi|313156842|gb|EFR56282.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 382

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 49/192 (25%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
              +F Q ++           AA K I GD  L+L CG G  +L L+R F RV+ +E ++
Sbjct: 67  PPLAFEQASSE--------ACAAHKRIDGDTALDLTCGLGVDALFLSRRFRRVVTLERSE 118

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
                A  N       N+++V  S++E+ Q                   RF  IF DP R
Sbjct: 119 TLARIAAENFRRLQAANIEVVHTSAEEYLQR---------------PGLRFDWIFADPDR 163

Query: 302 SGLDDATVGMVQAYPHILYISCNPD-SL-----CRDLSILSTTHTIERLALFD------Q 349
              D   +  ++A        C+PD +       R    L     I+   LFD       
Sbjct: 164 RSADGRKLVRLEA--------CSPDVTALMPLIARASGRLC----IKNSPLFDVDEALRL 211

Query: 350 FPYTRHMECGVL 361
           FP +R +E   L
Sbjct: 212 FPDSR-VEVVSL 222


>gi|303240940|ref|ZP_07327451.1| protein of unknown function Met10 [Acetivibrio cellulolyticus CD2]
 gi|302591526|gb|EFL61263.1| protein of unknown function Met10 [Acetivibrio cellulolyticus CD2]
          Length = 389

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 13/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                       +L+ +   G+F+L         VL ++I+  +VE A  N   N+++ V
Sbjct: 206 RAALKPFVKDAKVLDCFSHTGSFALHAGYYGASNVLGIDISDHAVECASRNAKLNNLDGV 265

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                              F++L++    + +F TI +DPP       A  G V+ Y  I
Sbjct: 266 -----------CTFEAANTFDKLREFYDTNEQFDTIILDPPAFTKTRGAVEGAVRGYKEI 314


>gi|193214995|ref|YP_001996194.1| Mg-protoporphyrin IX methyl transferase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193088472|gb|ACF13747.1| magnesium protoporphyrin O-methyltransferase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 233

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +A +      W+++        +L+  CG G FS+ +A+    V A++IA   VE A+ +
Sbjct: 47  HAQMMAQAESWLMSHNLPKGATILDAGCGTGLFSIAIAKRGFNVTAIDIAAQMVEQAKVD 106

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
                  + +       +  + +      F+ L       ++
Sbjct: 107 AKREGVADRINFNVGDLESISGSFDAVVCFDVLIHYPAKGFK 148


>gi|153809749|ref|ZP_01962417.1| hypothetical protein RUMOBE_00130 [Ruminococcus obeum ATCC 29174]
 gi|149833927|gb|EDM89007.1| hypothetical protein RUMOBE_00130 [Ruminococcus obeum ATCC 29174]
          Length = 400

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 15/123 (12%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G+F+L         V  V+ ++ +V+ A  N   N ++
Sbjct: 212 YNRLAIQKLCKDARVLDCFTHTGSFALNAGIAGAKEVTGVDASQLAVDQATENAKLNGLD 271

Query: 258 N-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAY 315
           + VK +     E    +  E E            ++  + +DPP       +    V+ Y
Sbjct: 272 DKVKFICEDVFELLPKLEEEGE------------KYDVVILDPPAFTKSRSSVKNAVKGY 319

Query: 316 PHI 318
             I
Sbjct: 320 REI 322


>gi|296109721|ref|YP_003616670.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
 gi|295434535|gb|ADG13706.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
          Length = 383

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           L         +L+++C  G FS+  A     V  ++++K ++  A  N+  N++  +  +
Sbjct: 204 LEKFIKPGDRVLDVFCYTGGFSVHAAIRGAYVTGIDLSKKALSVAEQNMEINNIPKDRYE 263

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +  ++            F  L D+     ++  + +DPP        + 
Sbjct: 264 FIEGNA------------FEILTDLADRGEKYDVVILDPPAFAQSKKYLK 301


>gi|327298675|ref|XP_003234031.1| hypothetical protein TERG_05899 [Trichophyton rubrum CBS 118892]
 gi|326464209|gb|EGD89662.1| hypothetical protein TERG_05899 [Trichophyton rubrum CBS 118892]
          Length = 294

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 + + V A  +G     L+L CG+G  +  LA  F +V  ++ +   +E A  N+
Sbjct: 19  PEYPQKLYDMVFAYHRGGHDTCLDLGCGHGLIARFLAPKFKKVYGIDPSTGMIEQA-KNL 77

Query: 252 AANHVNNVKIVRMSSKEF 269
                 NV+ V+ +++  
Sbjct: 78  TKEQ--NVEFVQAAAESL 93


>gi|255021278|ref|ZP_05293327.1| LSU m5C1962 methyltransferase RlmI [Acidithiobacillus caldus ATCC
           51756]
 gi|254969289|gb|EET26802.1| LSU m5C1962 methyltransferase RlmI [Acidithiobacillus caldus ATCC
           51756]
          Length = 432

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 212 DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L+   G F+L LAR     VLAV+ +  ++     N   N ++ V      + E  
Sbjct: 225 RVLDLFSYLGGFALPLARAGAVEVLAVDRSASALALLEENARRNGLSQVHGHEGEALETL 284

Query: 271 QAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327
           + +R   E   L  +D  +    R          + L+D  + +++    +   SC+   
Sbjct: 285 RQLRDRAESFDLILLDPPALIKSRKDVRDGTAAYARLNDLALRLLRPDGLLFTASCSYH- 343

Query: 328 LCRDL 332
           L RD 
Sbjct: 344 LSRDA 348


>gi|56961923|ref|YP_173645.1| 16S rRNA G1207 methylase [Bacillus clausii KSM-K16]
 gi|56908157|dbj|BAD62684.1| 16S rRNA G1207 methylase [Bacillus clausii KSM-K16]
          Length = 219

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 18/117 (15%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             G+ GD+L++ CG G   L LA+     RV+ +++ + + + A  N  AN V N  I  
Sbjct: 70  FPGLDGDILDVGCGYGPIGLALAKADPSRRVVMIDVNERACQLAEKNAKANGVKNADI-- 127

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
                F +      E          S R+  +  +PP R+G D       QAY  ++
Sbjct: 128 ----HFDERGLAGFE---------RSARYAAVVTNPPIRAGKDVVHDIYEQAYERLI 171


>gi|153953538|ref|YP_001394303.1| ribosomal protein L11 methyltransferase [Clostridium kluyveri DSM
           555]
 gi|219854160|ref|YP_002471282.1| hypothetical protein CKR_0817 [Clostridium kluyveri NBRC 12016]
 gi|189037694|sp|A5N6M4|PRMA_CLOK5 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|254783297|sp|B9E043|PRMA_CLOK1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|146346419|gb|EDK32955.1| PrmA [Clostridium kluyveri DSM 555]
 gi|219567884|dbj|BAH05868.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 312

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 72/207 (34%), Gaps = 17/207 (8%)

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
           +I A   E  +       +R  +  ++ L     + +V +  +++ ++ W     +    
Sbjct: 65  VIKAYYRESESFYGYLKYIRHNINNLENLGIDKGKGLVVV--NKVNEEDWENGWKKYYKP 122

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
             A              KI +    + E      + ++                  M   
Sbjct: 123 YRA------------GEKIVI--KPLWEEYENKKQDIVVEIDPGMAFGTGTHETTKMCIK 168

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            L      + ++ ++  G+G  ++  ++     V AV++   +VE+A  NI+ N++ N+K
Sbjct: 169 ALEKYVRPESNVFDIGTGSGILAIAASKLGAKEVTAVDLDPVAVESALKNISYNNIKNIK 228

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDI 287
           +   +  E           N + D+ +
Sbjct: 229 VFHGNLMEGVHGKADILVINIIADVIL 255


>gi|240169514|ref|ZP_04748173.1| modification methylase HemK [Mycobacterium kansasii ATCC 12478]
          Length = 282

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 20/131 (15%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH- 230
           TV+   +  R     F  P       +LEW  A     +  +++L  G+G  ++ LARH 
Sbjct: 76  TVSFGPVELRVGPGVFI-PRPE-TEALLEWATAQPLPQRAVIVDLCTGSGALAVALARHR 133

Query: 231 -FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              R++ ++ ++ ++E AR N      +NV+++R                    D+D   
Sbjct: 134 PAARIIGLDDSEAALEYARRNAEG---SNVELIRADVT----------TLGLRPDLD--- 177

Query: 290 YRFKTIFVDPP 300
            R   +  +PP
Sbjct: 178 RRVDLVIANPP 188


>gi|260753487|ref|YP_003226380.1| hypothetical protein Za10_1253 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552850|gb|ACV75796.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 291

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 25/185 (13%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R   D W+     +  +      +  L     K    L      E +    +   +R + 
Sbjct: 46  RPAQDNWQADGEFIGASDEDGGGRWHLKPYVPKDGWLLQ----WEDVCFLAQNTSFRHL- 100

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +F    A     M E V         ++L L+   G  SL LA    +V  V+ +K SV
Sbjct: 101 -AFFPDMAPQWAWMQERVTE-----DAEILNLFGYTGVGSLALAAKGGKVTHVDASKKSV 154

Query: 245 EAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            +A+ N   + + +  ++ +   + +FT      RE  R +       R+  I +DPP+ 
Sbjct: 155 ASAKNNAELSGLTDKPIRWIVDDAVKFT-----AREVRRHR-------RYDGILMDPPKF 202

Query: 303 GLDDA 307
           G   A
Sbjct: 203 GRGPA 207


>gi|118444755|ref|YP_878564.1| ribosomal protein L11 methyltransferase [Clostridium novyi NT]
 gi|166223410|sp|A0Q1R2|PRMA_CLONN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|118135211|gb|ABK62255.1| ribosomal protein L11 methyltransferase [Clostridium novyi NT]
          Length = 312

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L         + ++  G+G  S+  A+ +   V+ V++   +V+AA+ N+  N+++N+
Sbjct: 169 KALEEYVNEDSVVFDIGTGSGILSIAAAKLNAKHVVGVDLDPVAVDAAKENVELNNLDNI 228

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDI 285
           +I+  +  E           N L DI
Sbjct: 229 EILYGNLMEVVDGKANIVVANILADI 254


>gi|297621956|ref|YP_003710093.1| hypothetical protein wcw_1746 [Waddlia chondrophila WSU 86-1044]
 gi|297377257|gb|ADI39087.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 268

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 24/201 (11%)

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
            L   ++       + + K    R  + +   V    + ++     F           + 
Sbjct: 36  KLPQEEWDKADGVFSREGKSHWKRP-IKKTWNVKIGGIAFKLAATDFGHIGVFPEHEEVW 94

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
              A        +L L+  +G  +L   +    V  V+ +K +VE AR N A N+++   
Sbjct: 95  HWSADRIKPGDHVLNLFAYSGGATLACVKAGAEVCHVDASKGTVEWARENAALNNLD-AA 153

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD------------DAT 308
            +R    +  + ++RE +  R         R+  I +DPP  G               A 
Sbjct: 154 PIRWIVDDVVKFLKRELKRGR---------RYDGIILDPPTFGRGSQGQVFKIERDLPAL 204

Query: 309 VGMVQAY-PHILYISCNPDSL 328
           +GM+  + P  + +SC+  S 
Sbjct: 205 LGMLAQFKPRFISLSCHTGSF 225


>gi|262279541|ref|ZP_06057326.1| methyl transferase [Acinetobacter calcoaceticus RUH2202]
 gi|262259892|gb|EEY78625.1| methyl transferase [Acinetobacter calcoaceticus RUH2202]
          Length = 270

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 19/178 (10%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L  ++ Q  L G            +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTTQQEQDYLAGLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSV 244
                      ++E VL+       ++++L  G G  +L LA      +V A +I  P++
Sbjct: 92  --------TEVLVETVLSLNLPKNANIVDLGTGTGAIALALASEHPDWQVTATDIYAPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           E A+ N   + +  VK    +  +     + +   +    ID      + +  +P R+
Sbjct: 144 EVAKENAQTHGLQQVKFACGAWFDALDKQQFDLIVSNPPYIDPEDEHMQALATEPRRA 201


>gi|254230551|ref|ZP_04923919.1| protein methyltransferase HemK (Protein-glutamine
           N-methyltransferase hemK) (Protein-(glutamine-N5) MTase
           hemK) [Vibrio sp. Ex25]
 gi|262394971|ref|YP_003286825.1| Polypeptide chain release factor methylase [Vibrio sp. Ex25]
 gi|151936923|gb|EDN55813.1| protein methyltransferase HemK (Protein-glutamine
           N-methyltransferase hemK) (Protein-(glutamine-N5) MTase
           hemK) [Vibrio sp. Ex25]
 gi|262338565|gb|ACY52360.1| Polypeptide chain release factor methylase [Vibrio sp. Ex25]
          Length = 284

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 29/172 (16%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W E A+             + +       I  +R++      V+  TLI R         
Sbjct: 48  WPEKALEAEQQAKFNALLERRLAGEPVAYIIGEREFWSLPFKVSPSTLIPRPD------- 100

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAAR 248
                  ++E  L  T    G +L+L  G G  ++ LA      +V+ V++ + +   A 
Sbjct: 101 ----TERLVEVALDKTYEQTGPILDLGTGTGAIAIALASEMPTRQVMGVDLKQEAKALAE 156

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           YN    ++ NV   + S                  +      +F  I  +PP
Sbjct: 157 YNAEQLNIKNVTFAQGS----------------WFEPITEGTKFALIVSNPP 192


>gi|302821949|ref|XP_002992635.1| hypothetical protein SELMODRAFT_448841 [Selaginella moellendorffii]
 gi|300139599|gb|EFJ06337.1| hypothetical protein SELMODRAFT_448841 [Selaginella moellendorffii]
          Length = 446

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 73/289 (25%), Gaps = 80/289 (27%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAF----------QVPNLQ-----------------IFR 37
           L    YE+QL EK D +  ++  F            P  +                 I  
Sbjct: 157 LASQSYEEQLREKRDGVATVLRKFVRHTRKCCVHGTPVPEWLTPGKEKGGMACDFEGIIS 216

Query: 38  SEP-IHYRMRAEFHIWHDGDDLYHIMFDQQ--TKERMRIDYFMPGSLLINALMIEMMATI 94
           S     YR + EF I    D    + F      K    I          N   I      
Sbjct: 217 SPVVEGYRNKCEFSIGFSADGESVVGFQMGMFRKGITTIGNPRNCR---NVSDIAKFYAG 273

Query: 95  RLEPLLRAKLFQI-------------------------DYLTSQSDQAIVTLIYHRLL-- 127
            LE  +R   FQ+                         + + + ++  +V     R L  
Sbjct: 274 ALESFIRTSEFQVWNKENNSGFWRMLTVREGRHPRTCQEEVPTVAEVMLVVQYLCRYLHV 333

Query: 128 DDAWRECAIRLRDALHARKYQ-----------------IQLIGRANKTKICL---DRDYV 167
            DA  +   R+   L +  +                  +     A+   I L     +  
Sbjct: 334 SDAKMKEYERMARELSSAAFSAAPPVTLTALLVQEHVGVSNAAPADAPLISLAIPGTEVS 393

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
            + +      L +R    +F Q N+     +              LL  
Sbjct: 394 VQYIHDYIGDLQFRISPTAFFQVNSFAAEKLYALAGEWAGLGPNTLLSA 442


>gi|257453785|ref|ZP_05619063.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enhydrobacter aerosaccus SK60]
 gi|257448712|gb|EEV23677.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enhydrobacter aerosaccus SK60]
          Length = 284

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/203 (23%), Positives = 74/203 (36%), Gaps = 40/203 (19%)

Query: 169 ERLTVAGRTLIYRQIENSFTQ----PNAGI------NVHMLEWVLAATKGI---QGDLLE 215
           E L +AG+   Y   + SF Q     N            ++E VL   K     Q ++L+
Sbjct: 61  EEL-IAGKPFAYVVGKQSFWQHEFLVNQHTLIPRPDTERLIEAVLNHHKNSLSKQMNILD 119

Query: 216 LYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQA 272
           L  G+G  ++ LA  F    V AV+ +  ++  A  N     V+N+     S  + F  A
Sbjct: 120 LGTGSGCIAITLAEEFKNSSVSAVDKSPQALSVATQNAKRIGVSNIAFFEGSWYEPFMTA 179

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDL 332
                           S +F  I  +PP    +D  +  +   P    IS    +L  D 
Sbjct: 180 ------------HGDESNKFDIIVSNPPYIDPNDPHLAGLTDEP----IS----ALIADN 219

Query: 333 SILSTTHTIERLALFDQFPYTRH 355
             ++    I + A   QF    H
Sbjct: 220 KGMADICHIVKTAP--QFLQ-PH 239


>gi|50121118|ref|YP_050285.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pectobacterium atrosepticum SCRI1043]
 gi|49611644|emb|CAG75093.1| protein methyltransferase [Pectobacterium atrosepticum SCRI1043]
          Length = 281

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 2/96 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L LA  R   RV+ V++   +V  A  N     
Sbjct: 98  LVEQALLRLPQTPCSVLDLGTGTGAIALALASERRDCRVIGVDLQPDAVALATKNAQQLK 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
           ++N + +  S     + MR     +    ID+    
Sbjct: 158 LDNARFLPGSWYSPLEHMRFALIVSNPPYIDVDDVH 193


>gi|312172220|emb|CBX80477.1| K02493 methyltransferase [Erwinia amylovora ATCC BAA-2158]
          Length = 295

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 76/213 (35%), Gaps = 34/213 (15%)

Query: 94  IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE-CAIRLRDALHARKYQIQLI 152
           +++   LRA   Q+    S    A + L        AW       + DA    +    L 
Sbjct: 1   MQIRDWLRAATAQLSESESPKRDAEILLQLVTGKSRAWLIGFDDSVLDAAALEQLHALLT 60

Query: 153 GRANKTKICL---DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
            RA    I     +R++    L V   TLI R   +S           ++E  LA     
Sbjct: 61  RRAAGEPIAYLTGEREFWSLSLNVTPDTLIPR--PDS---------EVLVEQALAHLPDA 109

Query: 210 QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L+L  G+G  +L LA  R   ++  ++    +V  A++N A   + N   +  +  
Sbjct: 110 ACSILDLGTGSGAIALALASERPDCQISGIDRIPAAVALAQHNAARLGLANATFMPGN-- 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                      F+ LK       +F  I  +PP
Sbjct: 168 ----------WFSALK-----PQQFAVIVSNPP 185


>gi|212223247|ref|YP_002306483.1| ribosomal RNA small subunit methyltransferase C [Thermococcus
           onnurineus NA1]
 gi|212008204|gb|ACJ15586.1| ribosomal RNA small subunit methyltransferase C [Thermococcus
           onnurineus NA1]
          Length = 209

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 17/116 (14%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + +        +L+L CG G   +V +R  + V+  ++ + +V  AR N+  N+V N ++
Sbjct: 63  IESMILDGNWRVLDLGCGYGAIGIVASRFVEYVVMTDVNRRAVSIARKNLKINNVRNAEV 122

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
              S  E                  +   +F TI  +PP     +    +V   P 
Sbjct: 123 RWGSLYE-----------------PVRGEKFDTIITNPPVHAGKEILREIVINAPR 161


>gi|18311530|ref|NP_563464.1| putative methyltransferase [Clostridium perfringens str. 13]
 gi|110802567|ref|YP_699802.1| putative methyltransferase [Clostridium perfringens SM101]
 gi|18146214|dbj|BAB82254.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|110683068|gb|ABG86438.1| putative methyltransferase [Clostridium perfringens SM101]
          Length = 391

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                      D+L+ +   G+F+L         VL +++++ +V+ A  N   N++ + 
Sbjct: 208 RAAMHRICKDMDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDR 267

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                          +   F+ L D      +F  + +DPP            ++ Y  I
Sbjct: 268 -----------VKFEKHNAFDVLGDWSREGKQFDVVILDPPAFTKSRNTVKQAIRGYKEI 316


>gi|170723616|ref|YP_001751304.1| protein-(glutamine-N5) methyltransferase [Pseudomonas putida W619]
 gi|169761619|gb|ACA74935.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Pseudomonas putida W619]
          Length = 276

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 19/119 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA      +V A++  + +V  A  N  
Sbjct: 94  TELLVETALELQPATPAKVLDLGTGTGAIALALASECPAWQVTALDRVEEAVALAERNRQ 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
              + NVK++   +  +  A+  ER              F  I  +PP    +D  +  
Sbjct: 154 RLGLGNVKVL---ASHWFSALDGER--------------FDLILSNPPYIAAEDPHLAA 195


>gi|317048555|ref|YP_004116203.1| release factor-specific protein-(glutamine-N5) methyltransferase
           [Pantoea sp. At-9b]
 gi|316950172|gb|ADU69647.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Pantoea sp. At-9b]
          Length = 276

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 19/108 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  LA        +L+L  G G  +L LA  R   +V   +  + +V  A+ N  
Sbjct: 95  TEVLVEQALAHLPATAATILDLGTGTGAIALALASERPDCQVTGCDRVEAAVALAQDNAQ 154

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             H+ NV+                  F       + S RF  I  +PP
Sbjct: 155 RLHITNVQF-----------------FLSHWFAALPSQRFDLIASNPP 185


>gi|294813601|ref|ZP_06772244.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326441993|ref|ZP_08216727.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294326200|gb|EFG07843.1| putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 326

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++             +L+L CG G F + LAR   RV  V+++   +E AR         
Sbjct: 109 LVASARLLDFPRGSRVLDLCCGPGLFLVPLARRGHRVTGVDLSPAMLERARAACERAGAE 168

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
            V+++R    ++T     +   N        +    
Sbjct: 169 -VELIRADMLDYTAPGAYDVILNVFTSFGYFADPAD 203


>gi|254391740|ref|ZP_05006936.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
 gi|197705423|gb|EDY51235.1| methyltransferase type 11 [Streptomyces clavuligerus ATCC 27064]
          Length = 238

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++             +L+L CG G F + LAR   RV  V+++   +E AR         
Sbjct: 21  LVASARLLDFPRGSRVLDLCCGPGLFLVPLARRGHRVTGVDLSPAMLERARAACERAGAE 80

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
            V+++R    ++T     +   N        +    
Sbjct: 81  -VELIRADMLDYTAPGAYDVILNVFTSFGYFADPAD 115


>gi|154149687|ref|YP_001403305.1| protein of unknown function Met10 [Candidatus Methanoregula boonei
           6A8]
 gi|153998239|gb|ABS54662.1| protein of unknown function Met10 [Methanoregula boonei 6A8]
          Length = 303

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 21/148 (14%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +A   G    +L+++ G G F++ LA H   V+A ++   +V     NI  +   NV  +
Sbjct: 155 IAEKMGRNELVLDMFAGVGPFAITLAPHAALVVAADLNPRAVALLMENIRNSRATNVLPL 214

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYPHILY 320
              ++                   I  ++F  I ++ P +G +       +++    I +
Sbjct: 215 LFDARRLDA---------------ILPWKFDRIIMNLPLAGTEFLPEAFRLIRPGGTIHF 259

Query: 321 ---ISCNPDSLCRDLSILSTTHTIERLA 345
              +SC  + L R +  L      ER+ 
Sbjct: 260 YSLVSCEKEHLDR-IRELGGAEVTERVV 286


>gi|255524020|ref|ZP_05390982.1| protein of unknown function Met10 [Clostridium carboxidivorans P7]
 gi|296186877|ref|ZP_06855278.1| Met-10+ like-protein [Clostridium carboxidivorans P7]
 gi|255512307|gb|EET88585.1| protein of unknown function Met10 [Clostridium carboxidivorans P7]
 gi|296048591|gb|EFG88024.1| Met-10+ like-protein [Clostridium carboxidivorans P7]
          Length = 391

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 15/112 (13%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
             D+L+ +   G+F+L         VL ++I++ +++ A  N A N + + V+    ++ 
Sbjct: 217 DADVLDCFTHTGSFALNAGVAGAKSVLGIDISQLAIDDASKNAALNKLSDTVRFECHNAF 276

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
           +      +E              ++  + +DPP      +T+   V+ Y  I
Sbjct: 277 DVLHEWAKE------------GRQYDVVILDPPAFTKSRSTIKSAVRGYKEI 316


>gi|197120607|ref|YP_002132558.1| methyltransferase type 11 [Anaeromyxobacter sp. K]
 gi|196170456|gb|ACG71429.1| Methyltransferase type 11 [Anaeromyxobacter sp. K]
          Length = 197

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            LA    I GD+L++ CG G  +L LA    RV+ V+ +  ++  A    AA  +  V  
Sbjct: 31  ALAEAGEIVGDVLDVGCGTGENALHLAALGKRVMGVDGSPTAIARALEKAAARGLQ-VPF 89

Query: 262 VRMSSKEFTQAMRR 275
           +   + +     RR
Sbjct: 90  LVADALDLKALHRR 103


>gi|261409530|ref|YP_003245771.1| methyltransferase small [Paenibacillus sp. Y412MC10]
 gi|261285993|gb|ACX67964.1| methyltransferase small [Paenibacillus sp. Y412MC10]
          Length = 201

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 20/107 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + A   G    +L++ CG G   L  AR      V  ++I   +VE A+ N   N + NV
Sbjct: 51  IDAMDFGQDAQVLDVGCGYGPIGLTAARMASQGHVTMIDINSRAVELAKENAKRNGIINV 110

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
            I+     E                  +   +F  +  +PP R+G +
Sbjct: 111 TILESDLFE-----------------AVKDQQFDVVLTNPPIRAGKE 140


>gi|220904778|ref|YP_002480090.1| cyclopropane-fatty-acyl-phospholipid synthase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869077|gb|ACL49412.1| cyclopropane-fatty-acyl-phospholipid synthase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 275

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 18/122 (14%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
              A     G +L++ CG G+ +L LA     V   +IA   VE A+ N A +   N   
Sbjct: 54  ARKAQLDPSGAVLDIGCGPGSHALELASLAGSVEGFDIAPKMVELAKENAARDGCANAHF 113

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
             +                   D+D   +R K   V   R+      V    A   ++  
Sbjct: 114 QVLD--------------WSHADLDDQGWRKKFQMVLASRT----PAVNDRAALEKMIAA 155

Query: 322 SC 323
           SC
Sbjct: 156 SC 157


>gi|313906027|ref|ZP_07839380.1| RNA cap guanine-N2 methyltransferase [Eubacterium cellulosolvens 6]
 gi|313469140|gb|EFR64489.1| RNA cap guanine-N2 methyltransferase [Eubacterium cellulosolvens 6]
          Length = 426

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 15/123 (12%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV- 256
           L  +         ++L+ +   G+F L  A      V++V+ ++ ++E AR N   N + 
Sbjct: 238 LNRLAIQPVCKGAEVLDCFTHTGSFGLNAALGGASHVISVDASELAIEQARKNAELNGLQ 297

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAY 315
           + +        E             L +++     F  + +DPP      A++   V+ Y
Sbjct: 298 DRIDYQCADVFEL------------LPNLERQGRSFDVVILDPPAFTKSRASIKAAVRGY 345

Query: 316 PHI 318
             I
Sbjct: 346 REI 348


>gi|292488089|ref|YP_003530966.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Erwinia amylovora CFBP1430]
 gi|292899300|ref|YP_003538669.1| protein methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291199148|emb|CBJ46262.1| protein methyltransferase [Erwinia amylovora ATCC 49946]
 gi|291553513|emb|CBA20558.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Erwinia amylovora CFBP1430]
          Length = 281

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/213 (21%), Positives = 76/213 (35%), Gaps = 34/213 (15%)

Query: 94  IRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE-CAIRLRDALHARKYQIQLI 152
           +++   LRA   Q+    S    A + L        AW       + DA    +    L 
Sbjct: 1   MQIRDWLRAATAQLSESESPKRDAEILLQLVTGKSRAWLIGFDDSVLDAAALEQLHALLT 60

Query: 153 GRANKTKICL---DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
            RA    I     +R++    L V   TLI R   +S           ++E  LA     
Sbjct: 61  RRAAGEPIAYLTGEREFWSLSLNVTPDTLIPR--PDS---------EVLVEQALAHLPDA 109

Query: 210 QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L+L  G+G  +L LA  R   ++  ++    +V  A++N A   + N   +  +  
Sbjct: 110 ACSILDLGTGSGAIALALASERPDCQISGIDRIPAAVALAQHNAARLGLANATFMPGN-- 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                      F+ LK       +F  I  +PP
Sbjct: 168 ----------WFSALK-----PQQFAVIVSNPP 185


>gi|315231778|ref|YP_004072214.1| N5-glutamine methyltransferase [Thermococcus barophilus MP]
 gi|315184806|gb|ADT84991.1| N5-glutamine methyltransferase [Thermococcus barophilus MP]
          Length = 200

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 14/99 (14%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR 229
           + +   + +Y   E++F              +    K  +GD+ L++  G G  +L++A+
Sbjct: 9   IKLKLHSQVYEPAEDTFL-------------LAENLKIREGDIALDVGTGTGIIALLMAK 55

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               VL V+I   +VE A+ N   N + NV+       E
Sbjct: 56  KAKFVLGVDINPIAVELAKENARINEIKNVEFRVSDLFE 94


>gi|73668886|ref|YP_304901.1| hypothetical protein Mbar_A1360 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396048|gb|AAZ70321.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 375

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 14/95 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L ++ CG G  ++  A+  + V AVEI    +E A+ N A   ++NVK +   + +    
Sbjct: 69  LADISCGIGGQTVFFAQQCEFVYAVEIDPKKIEYAKQNCAMYGLDNVKFICGDALD---- 124

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                       +         IF DP R   +  
Sbjct: 125 ----------PKVIEQIPAVDVIFSDPFRPAEESE 149


>gi|118468920|ref|YP_889201.1| modification methylase, HemK family protein [Mycobacterium
           smegmatis str. MC2 155]
 gi|118170207|gb|ABK71103.1| modification methylase, HemK family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 281

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 20/131 (15%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH- 230
           T A   L        F  P       +LEW +A        +++L  G G  +L LA+H 
Sbjct: 75  TAAFGPLTLEVGPGVFI-PRPE-TESLLEWAVAQQLPRDAVIVDLCTGTGALALALAQHR 132

Query: 231 -FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              RV+AVE +  ++E AR N A            +S E   A     +   L ++D   
Sbjct: 133 PQARVIAVEDSPAALEYARCNAA-----------GTSVEVLAADVTAPDL--LPELD--- 176

Query: 290 YRFKTIFVDPP 300
                +  +PP
Sbjct: 177 GAVDLVVSNPP 187


>gi|187736308|ref|YP_001878420.1| SAM-dependent methyltransferase [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426360|gb|ACD05639.1| putative SAM-dependent methyltransferase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 394

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 10/120 (8%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +   A       +L+ +C  G F+L  A      V AV++++ +++A   N   N V+ V
Sbjct: 205 YAAVARFARGRRVLDCFCNQGGFALACALAGASEVTAVDVSQDAMDAVARNARLNGVS-V 263

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
           + V  ++ +F   +++E    R    D   +++  I +DPP    +       ++ Y  I
Sbjct: 264 QCVTDNAFDF---LKKEAALVR----DGGEHKWDLIILDPPSFTRNKKSVHDAMRGYKEI 316


>gi|194865986|ref|XP_001971702.1| GG15106 [Drosophila erecta]
 gi|190653485|gb|EDV50728.1| GG15106 [Drosophila erecta]
          Length = 457

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 22/225 (9%)

Query: 91  MATIRLEPLLRAKLF-QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR-LRDALHARKYQ 148
                   +L++ L  + + LTS S    +  +  R     +++   + LRD L   +  
Sbjct: 128 YENWSANEILKSVLPTEEEGLTSYSRIGHIAHLNLRDHLLPYKQLIGQVLRDKLPNCRTV 187

Query: 149 IQLIGRANKT-------KICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHML 199
           +      + T        IC D +Y  E        + +   E  F++   N  ++    
Sbjct: 188 VNKASSIDNTYRNFQLELICGDPEYQVET---KENGVPF---EFDFSKVYWNPRLST--- 238

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           E           D+L +++ G G FS+  A+    VLA ++   S    ++N   N  + 
Sbjct: 239 EHERIVKLLKSDDVLYDVFAGVGPFSVPAAKKGCHVLANDLNPESFRWLQHNAKRNKCLP 298

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           N+++     ++F     RE    RL+  D  +Y        P  +
Sbjct: 299 NIQMCNKDGRQFIVEELREDLLKRLRTTDTTTYDIHITMNLPATA 343


>gi|90415052|ref|ZP_01223011.1| putative SAM-dependent methyltransferase [Photobacterium profundum
           3TCK]
 gi|90323826|gb|EAS40436.1| putative SAM-dependent methyltransferase [Photobacterium profundum
           3TCK]
          Length = 397

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSK 267
             +L  +C  G F L  L     +V+ V++++P+++ AR N  AN +   N + V     
Sbjct: 223 KRVLNCFCYTGGFGLYALKGGASQVINVDVSQPALDTARLNAEANGLPVENAEFVNADVF 282

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +  +  R   EF            F  + +DPP+        VG  + Y  I
Sbjct: 283 KLLREYRERGEF------------FDVVIMDPPKFAESKSQLVGACRGYKDI 322


>gi|227328866|ref|ZP_03832890.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 281

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L LA  R   RV  V++   +V  A  N     
Sbjct: 98  LVEQALLRLPQTPCAVLDLGTGTGAIALALASERRDCRVTGVDVQPDAVALATKNAQQLG 157

Query: 256 VNNVKIVRMS 265
           ++N   +  S
Sbjct: 158 LDNASFLSGS 167


>gi|226952753|ref|ZP_03823217.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Acinetobacter sp. ATCC 27244]
 gi|226836502|gb|EEH68885.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Acinetobacter sp. ATCC 27244]
          Length = 270

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 20/203 (9%)

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK------IC 161
             + S   Q    L+ H +L     E  +RL   L   + Q  L G A   +      + 
Sbjct: 11  GEIDSYERQEAAWLLEH-ILGVNSLELKLRLEQELTEIQEQAYLDGLARIEQGEPLAYVT 69

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
             + +    L V   TL+ R                ++E VL  +   Q ++++L  G G
Sbjct: 70  GSQPFWTLDLKVTHDTLVPRPD-----------TEILVETVLKLSLDPQANIVDLGTGTG 118

Query: 222 NFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
             +L LA  R    V A +I +P++E A+ N   + ++ VK    +  E  +  + +   
Sbjct: 119 AIALALASERPQWSVTATDIYQPTLEVAQENALKHGLSQVKFACGAWFEALEQQQFDLIV 178

Query: 280 NRLKDIDIHSYRFKTIFVDPPRS 302
           +    ID      + +  +P R+
Sbjct: 179 SNPPYIDPDDVHMQKLKSEPERA 201


>gi|269138758|ref|YP_003295459.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Edwardsiella tarda EIB202]
 gi|267984419|gb|ACY84248.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Edwardsiella tarda EIB202]
 gi|304558751|gb|ADM41415.1| hypothetical protein ETAF_1303 [Edwardsiella tarda FL6-60]
          Length = 279

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +++L  G G  +L LA  R   RV AVE    +V  A++N A   
Sbjct: 98  LVEQALMRLPAAPAQIVDLGTGTGAIALALASERPDCRVSAVEFNPDAVALAQHNAARLG 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++ V+I++ S                     +   RF  I  +PP
Sbjct: 158 LSRVEILQGS-----------------WFTPLAGRRFTLIVSNPP 185


>gi|15612687|ref|NP_240990.1| hypothetical protein BH0124 [Bacillus halodurans C-125]
 gi|10172736|dbj|BAB03843.1| BH0124 [Bacillus halodurans C-125]
          Length = 201

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 30/118 (25%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   + LAR      V  V++ + +++ A+ N  ANHV NV + 
Sbjct: 54  QFPEIEGDVLDVGCGYGPIGISLARDGGERSVHMVDVNERAIDLAKRNATANHVKNVVVY 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           R    +                  +   +F  I  +PP           ++A   +++
Sbjct: 114 RSDLFQ-----------------QVQDRQFAAIVTNPP-----------IRAGKRVVH 143


>gi|148653569|ref|YP_001280662.1| HemK family modification methylase [Psychrobacter sp. PRwf-1]
 gi|148572653|gb|ABQ94712.1| modification methylase, HemK family [Psychrobacter sp. PRwf-1]
          Length = 314

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 21/119 (17%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-----------RVLAVEIAKPSVEAARYNIAANHVN 257
           +   LL+L  G+G  ++ LA               +V A++ + P++E AR N A N V 
Sbjct: 131 LPKRLLDLGTGSGCIAISLAHELQMLAPNHTASQWQVTAIDYSNPALEVARRNAALNKVT 190

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           N++ ++       +A    +E  R          F  I  +PP    DD  +  ++A P
Sbjct: 191 NIEFIQSDWFSALEAANTNKESPR----------FDIIVSNPPYIVDDDEHLDKLKAEP 239


>gi|91774355|ref|YP_567047.1| methyltransferase [Methanococcoides burtonii DSM 6242]
 gi|91713370|gb|ABE53297.1| SAM-dependent methyltransferase [Methanococcoides burtonii DSM
           6242]
          Length = 357

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 16/110 (14%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + ++ CG G  ++  A+   +V A+EI    +E A  N     ++NV+ +   +     
Sbjct: 48  TIADISCGIGGQTIFFAKECKKVYAIEIDLKKIEYAEINCERYGLDNVEFICGDA----- 102

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHIL 319
               E   N++  +D        +F DP R   +D      +    P +L
Sbjct: 103 --LSEEVINQIPKLD-------VLFSDPARPPSEDERRLSSLQPGIPQVL 143


>gi|159905750|ref|YP_001549412.1| hypothetical protein MmarC6_1367 [Methanococcus maripaludis C6]
 gi|159887243|gb|ABX02180.1| protein of unknown function Met10 [Methanococcus maripaludis C6]
          Length = 380

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L         +L++    G F++        V AV++++ ++  A  N+  N V N   +
Sbjct: 201 LENYVKPGDKVLDVCSYTGGFAVHAGIKGGEVTAVDLSEKALAVAEENMELNGVKNYNFI 260

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++            F+ +K++  ++ +F  + +DPP
Sbjct: 261 VSNA------------FDAMKELINNNEKFDVVVLDPP 286


>gi|327393651|dbj|BAK11073.1| protein methyltransferase HemK [Pantoea ananatis AJ13355]
          Length = 280

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 29/131 (22%)

Query: 182 QIENSFT----QPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--R 229
             E  F     Q N            ++E  LA        +L++  G+G  +L +A  R
Sbjct: 72  IGEREFWSLPLQVNDATLIPRPDTEILVEQALAHLPESPARVLDMGTGSGAIALAIASER 131

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ V+    +V  A+ N A   + N   ++  S  F Q               I  
Sbjct: 132 PDCDVIGVDRIPAAVALAQRNAAHLAIPNATFIQ--SHWFAQ---------------ITP 174

Query: 290 YRFKTIFVDPP 300
            RF  I  +PP
Sbjct: 175 ARFDLIVSNPP 185


>gi|307267036|ref|ZP_07548551.1| Protein of unknown function methylase putative [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306917961|gb|EFN48220.1| Protein of unknown function methylase putative [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 391

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 31/150 (20%)

Query: 210 QGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
             ++L+ +   G+F++  L     RV  V+I++ ++E A+ N+  N        V  ++ 
Sbjct: 217 DAEVLDCFSHTGSFTVHALHYGAKRVETVDISEEAIEIAKKNVELNGYQERCNFVCDNA- 275

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYISCNPD 326
                      F+ L+  D  S +F T+ +DPP      +     ++ Y  I     N  
Sbjct: 276 -----------FDLLRRYDKESRKFDTVILDPPAFTKSKETVKDALRGYKEI-----N-- 317

Query: 327 SLCRDLSILSTTHTI------ERLALFDQF 350
              R L IL     +      + +   D F
Sbjct: 318 --LRALKILREGGFLITCSCSQHIKP-DMF 344


>gi|299140732|ref|ZP_07033870.1| ribosomal protein L11 methyltransferase [Prevotella oris C735]
 gi|298577698|gb|EFI49566.1| ribosomal protein L11 methyltransferase [Prevotella oris C735]
          Length = 287

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M+   L         +L+  CG G   ++ A+     V+  +I + SVE +++NIA 
Sbjct: 136 TTRMIASTLLHLDLKDKRILDCGCGTGILGIIAAKYGAKAVVGYDIDEWSVENSQHNIAI 195

Query: 254 NHVNNVKIVRMSS 266
           N+V N++I    +
Sbjct: 196 NNVENIEIYHGDA 208


>gi|115353185|ref|YP_775024.1| PUA domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115283173|gb|ABI88690.1| SAM-dependent methyltransferase / 23S rRNA m(5)C-1962
           methyltransferase [Burkholderia ambifaria AMMD]
          Length = 404

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 28/203 (13%)

Query: 129 DAWRECAIRLRDALHA-------RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +AW+E  +    +              I+      +T   L  D     L      + Y 
Sbjct: 142 EAWKEAIVAALTSATGCPNVYERSDVSIRDKEGLEQTTGVLAGDAPPATLIANENGVRYH 201

Query: 182 QIENSFTQPNAGINVHMLEW----VLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLA 236
                   PN       ++      L A    + D+L  +C  G FSL  L     RV++
Sbjct: 202 VDV-----PNGHKTGFYVDQRDNRALVAQYAAERDVLNCFCYTGGFSLAALKGGAKRVVS 256

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           ++ +  ++  A+ N+ AN  +  +   + +  F       +   RL D      RF  I 
Sbjct: 257 IDSSGDALALAQQNVVANGFDAERATWLDADAF-------KTLRRLVD---EGERFDLIV 306

Query: 297 VDPPRSG-LDDATVGMVQAYPHI 318
           +DPP+     D+     +AY  I
Sbjct: 307 LDPPKFAPTRDSVDRAARAYKDI 329


>gi|169795524|ref|YP_001713317.1| methyl transferase [Acinetobacter baumannii AYE]
 gi|213158535|ref|YP_002319833.1| protein methylase, HemK family [Acinetobacter baumannii AB0057]
 gi|215483011|ref|YP_002325216.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter baumannii AB307-0294]
 gi|301344981|ref|ZP_07225722.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter baumannii AB056]
 gi|301513509|ref|ZP_07238746.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter baumannii AB058]
 gi|301597422|ref|ZP_07242430.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter baumannii AB059]
 gi|332850712|ref|ZP_08432959.1| protein-(glutamine-N5) methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332866987|ref|ZP_08437304.1| protein-(glutamine-N5) methyltransferase [Acinetobacter baumannii
           6013113]
 gi|169148451|emb|CAM86317.1| methyl transferase [Acinetobacter baumannii AYE]
 gi|213057695|gb|ACJ42597.1| protein methylase, HemK family [Acinetobacter baumannii AB0057]
 gi|213988463|gb|ACJ58762.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter baumannii AB307-0294]
 gi|332730549|gb|EGJ61865.1| protein-(glutamine-N5) methyltransferase [Acinetobacter baumannii
           6013150]
 gi|332734316|gb|EGJ65444.1| protein-(glutamine-N5) methyltransferase [Acinetobacter baumannii
           6013113]
          Length = 271

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 19/178 (10%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L A++ Q  L G            +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTAQQEQDYLAGLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSV 244
                      ++E VL        ++++L  G G  +L LA  R    V A +I  P++
Sbjct: 92  --------TEVLVETVLNLNLPKNANIVDLGTGTGAIALALASERPDWFVTATDIYAPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           + A+ N   + +++VK    +  E  +  + +   +    ID      + +  +P R+
Sbjct: 144 DVAKENAQTHGLHHVKFACGAWFEALEPQQFDLIVSNPPYIDPEDEHMQALATEPRRA 201


>gi|271500558|ref|YP_003333583.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dickeya dadantii Ech586]
 gi|270344113|gb|ACZ76878.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dickeya dadantii Ech586]
          Length = 282

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L +A  R   +V+ ++    +V  A  N     
Sbjct: 98  LVEQALAVLPDGASSVLDLGTGTGAIALAIAHERPDCQVVGIDRQPDAVALASQNARRLG 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++N + +                        +   RF  I  +PP
Sbjct: 158 IHNARFLPGD-----------------WFSPLAGQRFAVIVSNPP 185


>gi|209521418|ref|ZP_03270128.1| PUA domain containing protein [Burkholderia sp. H160]
 gi|209498136|gb|EDZ98281.1| PUA domain containing protein [Burkholderia sp. H160]
          Length = 400

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L        D+L  +C  G FSL  L     RV++V+ +  ++  A+ N+AAN  +  
Sbjct: 216 RLLVQQYAQDRDVLNCFCYTGGFSLAALKGGAKRVVSVDSSGEALALAQQNVAANGFDAE 275

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     +      +AY  I
Sbjct: 276 RASWLDADAF-------KTLRRLYD---EGERFDLIVLDPPKFAPSREHVDRAARAYKDI 325


>gi|258593557|emb|CBE69898.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 236

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 35/69 (50%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            ++      +  +L++ CGNG  +  LA    R++ ++ ++ ++E A  +  +  ++++ 
Sbjct: 32  RLIREEPLRERAVLDVGCGNGRLTFALAEEAGRIIGIDWSEQAIEQANRHARSLSLDHIS 91

Query: 261 IVRMSSKEF 269
            V   +++ 
Sbjct: 92  FVCGDAEQI 100


>gi|39941690|ref|XP_360382.1| hypothetical protein MGG_05756 [Magnaporthe oryzae 70-15]
 gi|145022467|gb|EDK06487.1| hypothetical protein MGG_05756 [Magnaporthe oryzae 70-15]
          Length = 249

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 164 RDYVDERLTVAGR-TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG- 221
           R Y  +R ++        R   +++         + +   + A  G +  +++L+ G G 
Sbjct: 27  RKYWQQRYSIFSWYDYDVRLTHDAWFGVTPEPVANQIAQDMTA-SGTKTTVVDLFAGAGG 85

Query: 222 -NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREF 279
              +  LA  FDRV+A+E    ++  A++N         +  V     +F  A ++ +  
Sbjct: 86  NAIAFALAGSFDRVIAIERDADTLACAQHNAEVYGCGEWITWVHGDCFDFLAAQKKGKGN 145

Query: 280 N---RLKDIDIHSYRFKTIFVDPPRSGLD 305
           N    L D      +   IF  PP  G+D
Sbjct: 146 NSASSLPDNLRIDPKTTKIFASPPWGGVD 174


>gi|42521716|ref|NP_967096.1| HemK protein [Bdellovibrio bacteriovorus HD100]
 gi|39574246|emb|CAE77750.1| HemK protein [Bdellovibrio bacteriovorus HD100]
          Length = 293

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 16/146 (10%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
           I   RD+ + R  V  + LI R               H++E VLA     +  L  ++L 
Sbjct: 73  IMGYRDFFNHRFEVNNQVLIPRPE-----------TEHIVEDVLAWASDKEASLGLIDLG 121

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMR 274
           CG+G   L L + +   +++AV++   ++E A+ N  +    + V+ + + +      M 
Sbjct: 122 CGSGCIGLSLLKEYPNAKLIAVDLLPGAIEVAQRNAQSLDVADRVQFLNLDAGNVEAIMS 181

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPP 300
             ++F     ID+       I  D P
Sbjct: 182 AYKDFTGQSSIDVLVSNPPYIASDDP 207


>gi|193077722|gb|ABO12580.2| methyl transferase [Acinetobacter baumannii ATCC 17978]
          Length = 273

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 19/178 (10%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L A++ Q  L G            +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTAQQEQDYLAGLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSV 244
                      ++E VL        ++++L  G G  +L LA  R    V A +I  P++
Sbjct: 92  --------TEVLIETVLNLNLPKNANIVDLGTGTGAIALALASERPNWFVTATDIYAPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           + A+ N   + +++VK    +  E  +  + +   +    ID      + +  +P R+
Sbjct: 144 DVAKENAQTHGLHHVKFACGAWFEALEPQQFDLIVSNPPYIDPEDEHMQALATEPRRA 201


>gi|168205810|ref|ZP_02631815.1| putative methyltransferase [Clostridium perfringens E str. JGS1987]
 gi|169343327|ref|ZP_02864337.1| putative methyltransferase [Clostridium perfringens C str. JGS1495]
 gi|169298625|gb|EDS80706.1| putative methyltransferase [Clostridium perfringens C str. JGS1495]
 gi|170662746|gb|EDT15429.1| putative methyltransferase [Clostridium perfringens E str. JGS1987]
          Length = 391

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                      D+L+ +   G+F+L         VL +++++ +V+ A  N   N++ + 
Sbjct: 208 RAAMHRICKGMDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDR 267

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                          +   F+ L D      +F  + +DPP            ++ Y  I
Sbjct: 268 -----------VKFEKHNAFDVLGDWSREGKQFDVVILDPPAFTKSRNTVKQAIRGYKEI 316


>gi|253577170|ref|ZP_04854490.1| methyltransferase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843414|gb|EES71442.1| methyltransferase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 201

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 20/107 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + A       ++L++ CG G   L  AR      V  +++   +VE A+ N AAN VNNV
Sbjct: 50  IEAMDIPEDAEVLDVGCGYGPIGLAAARLATKGHVTMIDVNSRAVELAKENAAANGVNNV 109

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
            ++                        I + +F  +  +PP R+G  
Sbjct: 110 TVLESDLFS-----------------AIENRKFDVVLTNPPIRAGKA 139


>gi|182624317|ref|ZP_02952102.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
 gi|177910535|gb|EDT72908.1| putative methyltransferase [Clostridium perfringens D str. JGS1721]
          Length = 391

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                      D+L+ +   G+F+L         VL +++++ +V+ A  N   N++ + 
Sbjct: 208 RAAMHRICKGMDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDR 267

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                          +   F+ L D      +F  + +DPP            ++ Y  I
Sbjct: 268 -----------VKFEKHNAFDVLGDWSREGKQFDVVILDPPAFTKSRNTVKQAIRGYKEI 316


>gi|168209788|ref|ZP_02635413.1| putative methyltransferase [Clostridium perfringens B str. ATCC
           3626]
 gi|168213474|ref|ZP_02639099.1| putative methyltransferase [Clostridium perfringens CPE str. F4969]
 gi|170712114|gb|EDT24296.1| putative methyltransferase [Clostridium perfringens B str. ATCC
           3626]
 gi|170715017|gb|EDT27199.1| putative methyltransferase [Clostridium perfringens CPE str. F4969]
          Length = 391

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                      D+L+ +   G+F+L         VL +++++ +V+ A  N   N++ + 
Sbjct: 208 RAAMHRICKGMDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDR 267

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                          +   F+ L D      +F  + +DPP            ++ Y  I
Sbjct: 268 -----------VKFEKHNAFDVLGDWSREGKQFDVVILDPPAFTKSRNTVKQAIRGYKEI 316


>gi|291518832|emb|CBK74053.1| SAM-dependent methyltransferase [Butyrivibrio fibrisolvens 16/4]
          Length = 403

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 88/286 (30%), Gaps = 39/286 (13%)

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS- 112
               +   M  ++  + +  D+              ++  + L    R    + D+L   
Sbjct: 58  TNSKIRVRMMTRKKDQLIDDDFLYMRVKNAWEYRKSVLLPVDLN-CCRVIFGEADFLPGL 116

Query: 113 ---QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI------CLD 163
              + D  +V       +D    +    L++ + A  ++I+ +   +  K+         
Sbjct: 117 VIDKYDDVLVVESLALGIDKLKLKIVDMLKEIMTADGFKIRGVYERSDAKVRTKEGLAPY 176

Query: 164 RDYVDER----LTVAGRTLIYRQI-----ENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           + ++ E     + +    + Y        +  F              +          +L
Sbjct: 177 KGFIGEEFDTNVEIIENGVHYMVDVVNGQKTGFF------LDQKYNRLSIQRLCKDKRVL 230

Query: 215 ELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           + +   G F+L         V  ++I+  +V  A  N   N + N           T   
Sbjct: 231 DCFTHMGTFALNAGLGGASEVTGLDISDFAVAQATANAKLNGLEN-----------TVKF 279

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           ++    + L  +     +F  + +DPP      +AT   ++ Y  I
Sbjct: 280 KQANVLDELPKLAEAGEKFDVVILDPPAFTKSREATKNAIKGYREI 325


>gi|260779384|ref|ZP_05888276.1| Polypeptide chain release factor methylase [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605548|gb|EEX31843.1| Polypeptide chain release factor methylase [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 289

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L VA  TLI R                ++E  L      QGD+L+L  G
Sbjct: 77  ITGEREFWSLPLKVAPSTLIPRPD-----------TERLVEIALEKAVENQGDILDLGTG 125

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L +A      +V  V++ + + + A  N     + N + +  S            
Sbjct: 126 TGAIALAIASELPNRQVWGVDLKQEAKQLAESNAEHLGIRNTQFLSGS------------ 173

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                 +      +F  I  +PP
Sbjct: 174 ----WFEPVGTGTKFALIVSNPP 192


>gi|194225071|ref|XP_001492987.2| PREDICTED: similar to TRM5 tRNA methyltransferase 5 homolog (S.
           cerevisiae) [Equus caballus]
          Length = 559

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/272 (19%), Positives = 100/272 (36%), Gaps = 21/272 (7%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + MF   +  K  + I   +  +  I+   +E+     + E +LRA L +   +TS    
Sbjct: 192 YKMFTNDSFEKAELDILRQLNVNPQISKYNLELTYENFKSEEILRAVLPEGQDVTS--GF 249

Query: 117 AIVTLIYHRLLDDAWRECA----IRLRDALHARKYQIQLIGRANKTKICLDRD--YVDER 170
           + V  I H  L D            + D        +  I   + T      +    +E 
Sbjct: 250 SRVGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEEN 309

Query: 171 LTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVL 227
           +    R   Y   E  F++   N  ++    E          GD+L +++ G G F++ +
Sbjct: 310 MMTKVRENNYTY-EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAIPV 365

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
           A+    V A ++   S +   +N   N V+  VK+  +  K+F Q   RE    +L  + 
Sbjct: 366 AKKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGKDFLQGPVREELMQQLGPLS 425

Query: 287 IHSYRFKTIFVDPPRSGLD--DATVGMVQAYP 316
                   I ++ P   ++   A   ++   P
Sbjct: 426 KERKHSVHIVMNLPAKAIEFLSAFKLLLDGQP 457


>gi|17545416|ref|NP_518818.1| protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           GMI1000]
 gi|17427708|emb|CAD14227.1| probable protein-l-isoaspartate o-methyltransferase [Ralstonia
           solanacearum GMI1000]
          Length = 216

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         D+LE+  G+G  + +LA     V  V+IA   V  AR N+
Sbjct: 63  PRVEARVLQELAVRKHE---DVLEVGAGSGYMAALLAHRGRHVTTVDIAPELVAFARDNL 119

Query: 252 AANHVNNVKIVRMSSKE 268
           A N V NV +V+  + +
Sbjct: 120 ARNGVTNVDVVQGDAGQ 136


>gi|254482780|ref|ZP_05096017.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [marine gamma proteobacterium HTCC2148]
 gi|214036861|gb|EEB77531.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [marine gamma proteobacterium HTCC2148]
          Length = 277

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++EW L          L+L  G G  +L LA  +   RV   ++   +V+ A  N  
Sbjct: 94  TETLVEWALELPLPDDTVALDLGTGTGAIALALANEKPGWRVCGADVNIDAVQLASNNAL 153

Query: 253 ANHVNNVKIVRMS 265
           AN++  V+ ++  
Sbjct: 154 ANNLARVEFIQSD 166


>gi|160893506|ref|ZP_02074291.1| hypothetical protein CLOL250_01057 [Clostridium sp. L2-50]
 gi|156864901|gb|EDO58332.1| hypothetical protein CLOL250_01057 [Clostridium sp. L2-50]
          Length = 231

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 15/123 (12%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G+F+L         VL V+ +  +V+ A+ N   NH+ 
Sbjct: 43  YNRLAIQRLCKDAKVLDCFTHTGSFALNAGIAGATSVLGVDASALAVKQAQENAKLNHLE 102

Query: 258 N-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAY 315
           + V  +                F+ L +++    +F  + +DPP       ++   V+ Y
Sbjct: 103 DSVTFICKDV------------FDLLPELEEQGEKFDVVILDPPAFTKSRNSIKNAVKGY 150

Query: 316 PHI 318
             I
Sbjct: 151 REI 153


>gi|168217312|ref|ZP_02642937.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
 gi|182380570|gb|EDT78049.1| putative methyltransferase [Clostridium perfringens NCTC 8239]
          Length = 391

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                      D+L+ +   G+F+L         VL +++++ +V+ A  N   N++ + 
Sbjct: 208 RAAMHRICKGMDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDR 267

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                          +   F+ L D      +F  + +DPP            ++ Y  I
Sbjct: 268 -----------VKFEKHNAFDVLGDWSREGKQFDVVILDPPAFTKSRNTVKQAIRGYKEI 316


>gi|299068374|emb|CBJ39598.1| S-adenosyl-L-methionine-dependent methyltransferase [Ralstonia
           solanacearum CMR15]
          Length = 397

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  L      V++++ +  ++  A  N+A N  +  
Sbjct: 213 RALVGALARDRDVLNCFCYTGGFSLAALKGGARSVVSIDSSGEALAVAERNVALNGFDAA 272

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +   + +            F  L++      +F  I +DPP+            +AY  I
Sbjct: 273 RAEWLDA----------DVFKSLRNFRAEGRQFDLIVLDPPKFAASAQQVDRAARAYKEI 322


>gi|260554586|ref|ZP_05826807.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           protein [Acinetobacter baumannii ATCC 19606]
 gi|260411128|gb|EEX04425.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           protein [Acinetobacter baumannii ATCC 19606]
          Length = 273

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 19/178 (10%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L A++ Q  L G            +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTAQQEQDYLAGLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSV 244
                      ++E VL        ++++L  G G  +L LA  R    V A +I  P++
Sbjct: 92  --------TEVLVETVLNLNLPKNANIVDLGTGTGAIALALASERPDWFVTATDIYAPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           + A+ N   + +++VK    +  E  +  + +   +    ID      + +  +P R+
Sbjct: 144 DVAKENAQTHGLHHVKFACGAWFEALEPQQFDLIVSNPPYIDPEDEHMQALATEPRRA 201


>gi|257899726|ref|ZP_05679379.1| modification methylase HemK [Enterococcus faecium Com15]
 gi|293571481|ref|ZP_06682508.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E980]
 gi|257837638|gb|EEV62712.1| modification methylase HemK [Enterococcus faecium Com15]
 gi|291608486|gb|EFF37781.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E980]
          Length = 279

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 31/138 (22%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           D+ D RL V   TLI R                ++EW L  T  +  +++++  G G  +
Sbjct: 79  DFYDHRLKVTEATLIPRPE-----------TEELVEWCLDETPDVPLEVIDIGTGTGAIA 127

Query: 225 LVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           + L  AR    V AV++++ ++E A+ N        +     ++ E              
Sbjct: 128 ISLKAARKNWHVSAVDLSEEALEVAKENAQHEGTK-ISFYHGNTLE-------------- 172

Query: 283 KDIDIHSYRFKTIFVDPP 300
               +   RF  I  +PP
Sbjct: 173 ---PVQDRRFDVIISNPP 187


>gi|312196453|ref|YP_004016514.1| methyltransferase type 11 [Frankia sp. EuI1c]
 gi|311227789|gb|ADP80644.1| Methyltransferase type 11 [Frankia sp. EuI1c]
          Length = 261

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            G LL+L CG G  +L LA     V+ V+     +  A        + NV+ V+  +++ 
Sbjct: 37  AGRLLDLGCGPGTLALALAGQVGEVIGVDPEPDMLAEAARQTDLAGIQNVRWVKAHAEDL 96

Query: 270 TQAM 273
              +
Sbjct: 97  APDL 100


>gi|227552472|ref|ZP_03982521.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecium TX1330]
 gi|257888290|ref|ZP_05667943.1| modification methylase HemK [Enterococcus faecium 1,141,733]
 gi|257896820|ref|ZP_05676473.1| modification methylase HemK [Enterococcus faecium Com12]
 gi|293378551|ref|ZP_06624714.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium PC4.1]
 gi|227178384|gb|EEI59356.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecium TX1330]
 gi|257824344|gb|EEV51276.1| modification methylase HemK [Enterococcus faecium 1,141,733]
 gi|257833385|gb|EEV59806.1| modification methylase HemK [Enterococcus faecium Com12]
 gi|292642880|gb|EFF61027.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium PC4.1]
          Length = 279

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 31/138 (22%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           D+ D RL V   TLI R                ++EW L  T  +  +++++  G G  +
Sbjct: 79  DFYDHRLKVTEATLIPRPE-----------TEELVEWCLDETPDVPLEVIDIGTGTGAIA 127

Query: 225 LVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           + L  AR    V AV++++ ++E A+ N        +     ++ E              
Sbjct: 128 ISLKAARKNWHVSAVDLSEEALEVAKENAQHEGTK-ISFYHGNTLE-------------- 172

Query: 283 KDIDIHSYRFKTIFVDPP 300
               +   RF  I  +PP
Sbjct: 173 ---PVQDRRFDVIISNPP 187


>gi|121606321|ref|YP_983650.1| PUA domain-containing protein [Polaromonas naphthalenivorans CJ2]
 gi|120595290|gb|ABM38729.1| SAM-dependent methyltransferase / 23S rRNA m(5)C-1962
           methyltransferase [Polaromonas naphthalenivorans CJ2]
          Length = 394

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 11/94 (11%)

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            D+L  YC  G F++  LA     V +++ + P++E AR N+A N  +  +   + +   
Sbjct: 219 KDVLNCYCYTGGFTVAALAGGAQHVTSIDSSGPAIERARANVALNGFDAGRTTMLDAD-- 276

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
             AM R+               F  I +DPP+  
Sbjct: 277 VNAMLRQYL--------KEGRTFDAIVLDPPKFA 302


>gi|261333113|emb|CBH16108.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 420

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G   + +A+H    +V AV+I   ++ A+  N   N +   +   + S  F
Sbjct: 213 RVLDMCCGTGCVGIAIAKHVPSAQVTAVDILDEAIGASEENAKLNGLEASRFCTLKSDMF 272

Query: 270 TQAMRR----------EREFNRLKDIDIHSYRFKTIFVDPP 300
              +            + +  + +    H+  F  I  +PP
Sbjct: 273 ESFLVSNSGSLTGEDTKLDLKKKEPAAEHAGSFDIIVSNPP 313


>gi|71748306|ref|XP_823208.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70832876|gb|EAN78380.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 420

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G   + +A+H    +V AV+I   ++ A+  N   N +   +   + S  F
Sbjct: 213 RVLDMCCGTGCVGIAIAKHVPSAQVTAVDILDEAIGASEENAKLNGLEASRFCTLKSDMF 272

Query: 270 TQAMRR----------EREFNRLKDIDIHSYRFKTIFVDPP 300
              +            + +  + +    H+  F  I  +PP
Sbjct: 273 ESFLVSNSGSLTGEDTKLDLKKKEPAAEHAGSFDIIVSNPP 313


>gi|295094415|emb|CBK83506.1| SAM-dependent methyltransferase [Coprococcus sp. ART55/1]
          Length = 399

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G+F+L         VL V+ ++ ++  AR N A N + 
Sbjct: 211 YNRLAIQRICKDAKVLDCFTHTGSFALNAGIAGASSVLGVDASELAIAQARENAALNGL- 269

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316
                     E T +      F+ L +++    +F  + +DPP       ++   V+ Y 
Sbjct: 270 ----------ESTVSFECRDVFDLLPELESKGEQFDVVILDPPAFTKSRNSIKNAVKGYR 319

Query: 317 HI 318
            I
Sbjct: 320 EI 321


>gi|167031790|ref|YP_001667021.1| protein-(glutamine-N5) methyltransferase [Pseudomonas putida GB-1]
 gi|166858278|gb|ABY96685.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Pseudomonas putida GB-1]
          Length = 276

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 19/114 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   +V AV+  + +   A  N  
Sbjct: 94  TELLVETALELQPAAPAKVLDLGTGTGAIALALASDRPAWQVTAVDRVEEAAALAERNRQ 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              ++N ++            R    F+ L        RF  I  +PP    +D
Sbjct: 154 RLGLDNAQV------------RVSHWFDSL-----AGERFDLIVSNPPYIAAED 190


>gi|120402886|ref|YP_952715.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119955704|gb|ABM12709.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 209

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
               +  LE        I G +L++ CG G  +++LAR    VL ++ A  +VE AR N 
Sbjct: 26  PQQAIVELEQA----GLIGGRVLDVGCGTGEHTILLARAGYDVLGIDGAPTAVEQARRNA 81

Query: 252 AANHVNNVKIVRMSSKEFTQ 271
            A  V+  +     +     
Sbjct: 82  EAQGVD-ARFELADALHLGP 100


>gi|262382449|ref|ZP_06075586.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298374644|ref|ZP_06984602.1| protein-(glutamine-N5) methyltransferase [Bacteroides sp. 3_1_19]
 gi|262295327|gb|EEY83258.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298269012|gb|EFI10667.1| protein-(glutamine-N5) methyltransferase [Bacteroides sp. 3_1_19]
          Length = 318

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 90/240 (37%), Gaps = 28/240 (11%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           I   + ++      + L+R  + ++  L++      + L   + L D  +     + + L
Sbjct: 8   IRNSLKDIYPPGEAQALVRLIMERVCGLSTHQ----LLLGKGKELSDTEKFKIKEIVEGL 63

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
              K    L+G A         D+      V    LI R                ++E +
Sbjct: 64  RLYKPIQYLLGIA---------DFYGMEFKVTPDVLIPRPE-----------TAELVERI 103

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +   +G    +L++  G+G  ++ LA+H     V AV+I+  ++  A  N   N V+ V 
Sbjct: 104 ITDYRGQAPRILDIGTGSGCIAISLAKHLPKAEVAAVDISPEALAVAEENARLNQVS-VS 162

Query: 261 IVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
            + +    E   +  + +    +++  +     K+     P+S  ++  V  +  +  I+
Sbjct: 163 FLELDILSEGYPSFMQGKLKFHVEETKVSRKENKSFTYMKPKSHTEETAVSPIGNFNCIV 222


>gi|322807274|emb|CBZ04848.1| ribosomal protein L11 methyltransferase [Clostridium botulinum
           H04402 065]
          Length = 160

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L         + ++ CG+G  S+  A+     V+ V++   +V++++ NI  
Sbjct: 10  TTRMCINALEKYIKEDRTVFDIGCGSGILSIAAAKLGAKHVIGVDLDPVAVKSSKENIKY 69

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           N+++N++I+  +  E  +        N + D+ I
Sbjct: 70  NNLDNIEILEGNLMEVVEGRANIVVANIIADVII 103


>gi|320167535|gb|EFW44434.1| Tgs1 protein [Capsaspora owczarzaki ATCC 30864]
          Length = 522

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 13/142 (9%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG--NFSLVLARHFDRVLAVEIAK 241
           E  +      +    + W  AA     G +++ +CG G       L+ HF  V+A++I  
Sbjct: 314 EEGWYSVTPEVIAAHIAWRCAA-----GVVVDAFCGVGGNTIQFALSSHF--VIAIDIDP 366

Query: 242 PSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV--D 298
             +E AR+N     V + ++ +          +R +  F             +   +   
Sbjct: 367 RKIECARHNARLYGVEDRIEFIVADFFAVAPRLRADVVFLSPPWGGPSYLEKEVFALEDM 426

Query: 299 PPRSGLDDATVGMVQAYPHILY 320
            PR G  +         P+I Y
Sbjct: 427 LPRHGA-EIFRAAQSISPNIAY 447


>gi|118465310|ref|YP_880756.1| modification methylase, HemK family protein [Mycobacterium avium
           104]
 gi|254774339|ref|ZP_05215855.1| modification methylase, HemK family protein [Mycobacterium avium
           subsp. avium ATCC 25291]
 gi|118166597|gb|ABK67494.1| modification methylase, HemK family protein [Mycobacterium avium
           104]
          Length = 312

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 35/181 (19%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
           LL+   +E   R RDA+ AR  ++ L       +  L         T A   ++      
Sbjct: 50  LLESPGQEFFQRYRDAVLARARRVPL-------QHLLG--------TAAFGPVLLHVGPG 94

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF------DRVLAVEI 239
            F          +LEW  A     +  +++L  G+G  ++ LA H        R++ V+ 
Sbjct: 95  VF--VPRPETEALLEWATAQQLPPRPVIVDLCTGSGALAVALAHHRAGRGLPARIVGVDN 152

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  ++E AR N A      V++VR    E  +      + +          R   +  +P
Sbjct: 153 SDAALEYARRNAAG---TTVELVRADVIELARVPGSAPDLD---------GRVDLVVANP 200

Query: 300 P 300
           P
Sbjct: 201 P 201


>gi|262196571|ref|YP_003267780.1| RNA methylase [Haliangium ochraceum DSM 14365]
 gi|262079918|gb|ACY15887.1| putative RNA methylase [Haliangium ochraceum DSM 14365]
          Length = 412

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 208 GIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               ++L LY   G FS+  A     RV +V+IA+P++ +AR N A N ++        +
Sbjct: 235 AAGAEVLNLYAYTGGFSVHAALGGAQRVSSVDIARPAIASARDNFALNGLDP------DA 288

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT-VGMVQAYPHI 318
            EF      E     L+ +     RF  + VDPP     +      ++AY  +
Sbjct: 289 HEFA----AEDALAFLERVQQRGRRFDLVIVDPPSFAPSERAKPKALRAYGKV 337


>gi|157165657|ref|YP_001465977.1| flagellar basal-body rod protein [Campylobacter concisus 13826]
 gi|112801709|gb|EAT99053.1| methyltransferase domain family [Campylobacter concisus 13826]
          Length = 241

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 17/131 (12%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           + I   +    LA      G D+L++ CG G +S+ L++    +  ++ ++  +E    +
Sbjct: 20  SAIQQQIFGKALAWGVDFSGKDILDIGCGTGVWSIFLSKTAKHITGIDSSEKMIEILNED 79

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                V N           T  +   REF  LK  DI       I    P    D+  + 
Sbjct: 80  AKRFGVTN----------LTSEVCSWREFKPLKHFDIA------ICTMSPAVASDEDFLK 123

Query: 311 MVQAYPHILYI 321
                   LY+
Sbjct: 124 FQNCAKQKLYL 134


>gi|327400883|ref|YP_004341722.1| RNA cap guanine-N2 methyltransferase [Archaeoglobus veneficus SNP6]
 gi|327316391|gb|AEA47007.1| RNA cap guanine-N2 methyltransferase [Archaeoglobus veneficus SNP6]
          Length = 399

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++ CG G   L  A H  +V  VEI       A  N  A  +NN++I+   +      
Sbjct: 101 IADVSCGVGGQLLFFATHCKKVYGVEINPKRAIIAALNAMALELNNIEIIAGDA------ 154

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQAYP-HIL 319
                     +++ +       IF DP R  G +  T+  ++  P  I+
Sbjct: 155 --------LGEEVPVLVRDADIIFSDPARPPGEEIRTIDSLEPNPLRIV 195


>gi|17544770|ref|NP_518172.1| hypothetical protein RSc0051 [Ralstonia solanacearum GMI1000]
 gi|17427059|emb|CAD13579.1| putative predicted sam-dependent methyltransferase protein
           [Ralstonia solanacearum GMI1000]
          Length = 397

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  L      V++++ +  ++  A  N+A N  +  
Sbjct: 213 RALVGALARDRDVLNCFCYTGGFSLAALKGGARSVISIDSSGEALAVAERNVALNGFDAA 272

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +   + +            F  L++      +F  I +DPP+            +AY  I
Sbjct: 273 RAEWLDA----------DVFKSLRNFRAEGRQFDLIVLDPPKFAASAQQVDRAARAYKEI 322


>gi|304405628|ref|ZP_07387287.1| methyltransferase small [Paenibacillus curdlanolyticus YK9]
 gi|304345667|gb|EFM11502.1| methyltransferase small [Paenibacillus curdlanolyticus YK9]
          Length = 204

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 20/107 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + A    +  ++L++ CG G   L  A+      V  ++I + ++  A+ N   N ++N 
Sbjct: 50  IDALDIPVDAEVLDVGCGYGPIGLSAAKLATKGHVTMIDINERAIALAQENAKLNGIDN- 108

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
             + +   +  Q++R  R              +  I  +PP R+G  
Sbjct: 109 --ITVKQSDVYQSVRENR--------------YDAILTNPPIRAGKS 139


>gi|288924992|ref|ZP_06418928.1| ribosomal protein L11 methyltransferase [Prevotella buccae D17]
 gi|288338182|gb|EFC76532.1| ribosomal protein L11 methyltransferase [Prevotella buccae D17]
          Length = 288

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
                 M+  +L      +  +L+  CG G   +  A+     V+  +I + SVE  R+N
Sbjct: 136 HETTRMMVSTLLNMDLDGK-RILDCGCGTGILGIAAAKMGAREVVGYDIDEWSVENTRHN 194

Query: 251 IAANHVNNVKIVRMSS 266
              NHV N+++    +
Sbjct: 195 AELNHVENLEVYHGDA 210


>gi|88797559|ref|ZP_01113148.1| hypothetical protein MED297_10416 [Reinekea sp. MED297]
 gi|88779731|gb|EAR10917.1| hypothetical protein MED297_10416 [Reinekea sp. MED297]
          Length = 414

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
             LAA       +L+++   G + +  A +    V+  +++  ++     N   N  ++ 
Sbjct: 228 RALAAKWSAGKRVLDVFSYLGGWGITCAAQGAAEVICSDVSNSALSGVMENARLNGCDDR 287

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           V  ++  + +    + +ER+            RF  + VDPP        +  
Sbjct: 288 VSTIQGDAFDVLDQLNQERQ------------RFDVVIVDPPAFIARRKDIAA 328


>gi|224493320|sp|A0KKF0|RLMI_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
          Length = 397

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 16/120 (13%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NV 259
            AA       +L  +C  G F +  L      V+ V++++ +++ AR N   N ++  N 
Sbjct: 215 AAAKYTEGKRVLNCFCYTGGFGVYALKGGAKEVVNVDLSQNALDIARQNAELNGLDTSNT 274

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
           + VR               F  L++      +F  I +DPP+     A  +G  + Y  I
Sbjct: 275 QFVRHDV------------FKLLREYREKGDKFDVIVLDPPKFAESKAQLLGACRGYKDI 322


>gi|117618137|ref|YP_856751.1| methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559544|gb|ABK36492.1| methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 413

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 16/120 (13%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NV 259
            AA       +L  +C  G F +  L      V+ V++++ +++ AR N   N ++  N 
Sbjct: 231 AAAKYTEGKRVLNCFCYTGGFGVYALKGGAKEVVNVDLSQNALDIARQNAELNGLDTSNT 290

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
           + VR               F  L++      +F  I +DPP+     A  +G  + Y  I
Sbjct: 291 QFVRHDV------------FKLLREYREKGDKFDVIVLDPPKFAESKAQLLGACRGYKDI 338


>gi|268592709|ref|ZP_06126930.1| protein-(glutamine-N5) methyltransferase [Providencia rettgeri DSM
           1131]
 gi|291311852|gb|EFE52305.1| protein-(glutamine-N5) methyltransferase [Providencia rettgeri DSM
           1131]
          Length = 277

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +E  L+     +  +L+L  G G  +L LA    +  V+ V+    +V  A+ N    ++
Sbjct: 99  VEQALSRLTEQKNQILDLGTGTGAIALALASEMQQSQVIGVDFNPDAVALAQRNQQRLNI 158

Query: 257 NNVKIVR 263
           +NVK ++
Sbjct: 159 SNVKFIQ 165


>gi|302876654|ref|YP_003845287.1| PUA domain containing protein [Clostridium cellulovorans 743B]
 gi|307687328|ref|ZP_07629774.1| PUA domain containing protein [Clostridium cellulovorans 743B]
 gi|302579511|gb|ADL53523.1| PUA domain containing protein [Clostridium cellulovorans 743B]
          Length = 395

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 15/112 (13%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
             ++L+++   G+F+L         V  ++I++ +V+  R N   N++ + V+ V   + 
Sbjct: 217 DAEVLDVFTHTGSFALNAGIAGAKHVTGLDISEHAVDFCRKNAELNNLQDKVEFVCGDAF 276

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
           E  +    E              ++  + VDPP       T+    + Y  I
Sbjct: 277 EVMKNWAYE------------GKKYDVVIVDPPAFTKARDTIKNAKKGYKKI 316


>gi|225862153|ref|YP_002747531.1| ybxB protein [Bacillus cereus 03BB102]
 gi|229182495|ref|ZP_04309746.1| hypothetical protein bcere0004_880 [Bacillus cereus BGSC 6E1]
 gi|225786254|gb|ACO26471.1| ybxB protein [Bacillus cereus 03BB102]
 gi|228600950|gb|EEK58519.1| hypothetical protein bcere0004_880 [Bacillus cereus BGSC 6E1]
          Length = 199

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   ++  V++ + ++E A+ N A N + NV I + 
Sbjct: 56  PDIKGDILDVGCGYGPIGLSLAKEFQDRKIHMVDVNERALELAKENAANNKIGNVHIFQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  H++
Sbjct: 116 SVYENVDGMYAA------------------ILSNPPIRAGKDVVHEILEKAVEHLV 153


>gi|123442666|ref|YP_001006643.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122089627|emb|CAL12477.1| putative protoporphyrinogen oxidase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 284

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 20/105 (19%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V+ V+I   +V  AR+N     
Sbjct: 98  LVEQALAHLPVTPCRILDLGTGTGAIALALASERPDCAVMGVDIKADAVALARHNAKKLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +NNV  ++ S                    D  S RF  I  +PP
Sbjct: 158 INNVDFLQSS------------------WFDSVSGRFTLIVSNPP 184


>gi|315506068|ref|YP_004084955.1| methyltransferase type 11 [Micromonospora sp. L5]
 gi|315412687|gb|ADU10804.1| Methyltransferase type 11 [Micromonospora sp. L5]
          Length = 264

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A   G    +++L CG G  SL LA     V+ ++     +  AR       + N   
Sbjct: 29  AAAFQLGADDTVVDLGCGTGQLSLPLADRVGTVIGMDPEPDMLAIARRTALDQGIGNATW 88

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           V  S  +   A+ R      L    + +           R  L +A   +V+    I  +
Sbjct: 89  VLGSDGDV-PALARL-----LGGRTVGALTVAVAIHFVDRDALFEAARPLVRPGGGIAVV 142


>gi|118475870|ref|YP_893021.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
 gi|118415095|gb|ABK83514.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis str.
           Al Hakam]
          Length = 213

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   ++  V++ + ++E A+ N A N + NV I + 
Sbjct: 70  PDIKGDILDVGCGYGPIGLSLAKEFQDRKIHMVDVNERALELAKENAANNKIGNVHIFQS 129

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  H++
Sbjct: 130 SVYENVDGMYAA------------------ILSNPPIRAGKDVVHEILEKAVEHLV 167


>gi|300692940|ref|YP_003753935.1| S-adenosyl-L-methionine-dependent methyltransferase [Ralstonia
           solanacearum PSI07]
 gi|299080000|emb|CBJ52675.1| S-adenosyl-L-methionine-dependent methyltransferase [Ralstonia
           solanacearum PSI07]
          Length = 397

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  L      V++++ +  ++  A  N+A N  +  
Sbjct: 213 RALVGALARDRDVLNCFCYTGGFSLAALKGGARSVVSIDSSGEALAVAERNVALNGFDAA 272

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +   + +            F  L++      +F  I +DPP+            +AY  I
Sbjct: 273 RAEWLDA----------DVFKSLRNFRAEGRQFDLIVLDPPKFAASAQQVDRAARAYKEI 322


>gi|229153879|ref|ZP_04282009.1| hypothetical protein bcere0010_860 [Bacillus cereus ATCC 4342]
 gi|228629560|gb|EEK86257.1| hypothetical protein bcere0010_860 [Bacillus cereus ATCC 4342]
          Length = 199

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I+GD+L++ CG G   L LA+ F   +V  V++ + ++E A+ N A N V NV I + 
Sbjct: 56  PDIKGDILDVGCGYGPIGLSLAKEFQDRKVHMVDVNERALELAKENAANNRVGNVHIFQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           S  E    M                     I  +PP R+G D     + +A  H++
Sbjct: 116 SIYENVDGMYAA------------------ILSNPPIRAGKDIVHEILEKAVEHLV 153


>gi|83748652|ref|ZP_00945670.1| Methyltransferase [Ralstonia solanacearum UW551]
 gi|207741930|ref|YP_002258322.1| predicted sam-dependent methyltransferase protein [Ralstonia
           solanacearum IPO1609]
 gi|83724696|gb|EAP71856.1| Methyltransferase [Ralstonia solanacearum UW551]
 gi|206593316|emb|CAQ60243.1| predicted sam-dependent methyltransferase protein [Ralstonia
           solanacearum IPO1609]
          Length = 397

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  L      V++++ +  ++  A  N+A N  +  
Sbjct: 213 RALVGALAKDRDVLNCFCYTGGFSLAALKGGARSVVSIDSSGEALAVAERNVALNGFDAA 272

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +   + +            F  L++      +F  I +DPP+            +AY  I
Sbjct: 273 RAEWLDA----------DVFKSLRNFRAEGRQFDLIVLDPPKFAASAQQVDRAARAYKEI 322


>gi|329925612|ref|ZP_08280453.1| methyltransferase small domain protein [Paenibacillus sp. HGF5]
 gi|328939741|gb|EGG36083.1| methyltransferase small domain protein [Paenibacillus sp. HGF5]
          Length = 201

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 20/107 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + A   G    +L++ CG G   L  AR      V  ++I   +VE A+ N   N + NV
Sbjct: 51  IDAMDFGQDAQVLDVGCGYGPIGLTAARMASQGHVTMIDINSRAVELAKENAKRNGIINV 110

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
            I+     E  +                    F  +  +PP R+G +
Sbjct: 111 TILESDLFEAVKDQL-----------------FDVVLTNPPIRAGKE 140


>gi|242239291|ref|YP_002987472.1| modification methylase, HemK family [Dickeya dadantii Ech703]
 gi|242131348|gb|ACS85650.1| modification methylase, HemK family [Dickeya dadantii Ech703]
          Length = 279

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L +A  R    VL V+    +V  A +N     
Sbjct: 98  LVEQALQRLPPQALSVLDLGTGTGAIALAIASERPACDVLGVDCQPDAVTLATHNARRLG 157

Query: 256 VNNVKIVRMS 265
           ++NV+ +   
Sbjct: 158 IHNVRFLLGD 167


>gi|195014269|ref|XP_001983992.1| GH16197 [Drosophila grimshawi]
 gi|193897474|gb|EDV96340.1| GH16197 [Drosophila grimshawi]
          Length = 436

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 22/222 (9%)

Query: 91  MATIRLEPLLRAKL-FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR-LRDALHARKYQ 148
                   +L++ L    + LTS S    +  +  R     +++     LRD L   +  
Sbjct: 105 YENWSANEILKSVLPADEEGLTSFSRIGHIVHLNLRDHLLPYKQLIGEVLRDKLPNCRTV 164

Query: 149 IQLIGRANKT-------KICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHML 199
           +      + T        IC D +Y  E        + +   E  F++   N  ++    
Sbjct: 165 VNKAASIDNTYRNFQLELICGDAEYQVET---KENGVPF---EFDFSKVYWNPRLST--- 215

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           E          GD+L +++ G G FS+  A+   +VLA ++   S    ++N   N  + 
Sbjct: 216 EHERIVKLLQTGDVLYDVFAGVGPFSVPAAKKRCQVLANDLNPVSYHWLQHNAKRNKCLA 275

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           ++++     +EF +   R+    R K    +SY        P
Sbjct: 276 HIQMFNKDGREFIRKELRDDLLQRWKSPPANSYNIHITMNLP 317


>gi|291617196|ref|YP_003519938.1| HemK [Pantoea ananatis LMG 20103]
 gi|291152226|gb|ADD76810.1| HemK [Pantoea ananatis LMG 20103]
          Length = 344

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 29/131 (22%)

Query: 182 QIENSFT----QPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--R 229
             E  F     Q N            ++E  LA        +L++  G+G  +L +A  R
Sbjct: 73  IGEREFWSLPLQVNDATLIPRPDTEILVEQALAHLPESPARVLDMGTGSGAIALAIASER 132

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+ V+    +V  A+ N A   + N   ++  S  F Q               I  
Sbjct: 133 PDCDVIGVDRIPAAVALAQRNAAHLAIPNATFIQ--SHWFAQ---------------ITP 175

Query: 290 YRFKTIFVDPP 300
            R   I  +PP
Sbjct: 176 ARLDLIVSNPP 186


>gi|169633251|ref|YP_001706987.1| methyl transferase [Acinetobacter baumannii SDF]
 gi|169152043|emb|CAP00927.1| methyl transferase [Acinetobacter baumannii]
          Length = 273

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/193 (20%), Positives = 65/193 (33%), Gaps = 36/193 (18%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L A++ Q  L G            +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTAQQEQDYLAGLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSV 244
                      ++E VL        ++++L  G G  +L LA  R    V A +I  P++
Sbjct: 92  --------TEVLVETVLNLNLPKNANIVDLGTGTGAIALALASERPDWFVTATDIYAPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E A+ N   + +++VK                 E            +F  I  +PP    
Sbjct: 144 EVAKENAQTHGLHHVKFACG-------VWYEALE----------PQQFDLIVSNPPYIDP 186

Query: 305 DDATVGMVQAYPH 317
           +D  +  +   P 
Sbjct: 187 EDEHMQALATEPR 199


>gi|300705545|ref|YP_003747148.1| s-adenosyl-l-methionine-dependent methyltransferase [Ralstonia
           solanacearum CFBP2957]
 gi|299073209|emb|CBJ44567.1| S-adenosyl-L-methionine-dependent methyltransferase [Ralstonia
           solanacearum CFBP2957]
          Length = 397

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  L      V++++ +  ++  A  N+A N  +  
Sbjct: 213 RALVGALAKDRDVLNCFCYTGGFSLAALKGGARSVVSIDSSGEALAVAERNVALNGFDAA 272

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +   + +            F  L++      +F  I +DPP+            +AY  I
Sbjct: 273 RAEWLDA----------DVFKSLRNFRAEGRQFDLIVLDPPKFAASAQQVDRAARAYKEI 322


>gi|118616465|ref|YP_904797.1| methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118568575|gb|ABL03326.1| methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 243

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L     + G++L+  CG    ++ LA     V+ ++I+  +VE A    A   + N    
Sbjct: 40  LIEQGKVHGEVLDAGCGEAALAMALAGRGHPVVGLDISPTAVELAGREAARPGLTNASFA 99

Query: 263 RMSSKEFT 270
                +F 
Sbjct: 100 VADITDFA 107


>gi|225405322|ref|ZP_03760511.1| hypothetical protein CLOSTASPAR_04542 [Clostridium asparagiforme
           DSM 15981]
 gi|225043146|gb|EEG53392.1| hypothetical protein CLOSTASPAR_04542 [Clostridium asparagiforme
           DSM 15981]
          Length = 428

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 17/114 (14%)

Query: 209 IQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMS 265
               +L+ +   G+F+L   LA    +V  V+ ++ +V+ A  N A N + + V  +   
Sbjct: 250 TPERVLDCFTHTGSFALNAGLA-GAGQVTGVDASQLAVDQAAENAALNGLSDRVSFLCAD 308

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
                        F+ L  ++    R+  + +DPP      +++   V+ Y  I
Sbjct: 309 V------------FDLLPKLEKDGERYDVVILDPPAFTKSRSSIKQAVKGYREI 350


>gi|170703227|ref|ZP_02894030.1| PUA domain containing protein [Burkholderia ambifaria IOP40-10]
 gi|170131860|gb|EDT00385.1| PUA domain containing protein [Burkholderia ambifaria IOP40-10]
          Length = 404

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  
Sbjct: 220 RALVAQYAADRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAD 279

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 280 RATWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 329


>gi|77736077|ref|NP_001029737.1| tRNA (guanine-N(1)-)-methyltransferase [Bos taurus]
 gi|119371016|sp|Q3MHN8|TRMT5_BOVIN RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; AltName:
           Full=M1G-methyltransferase; AltName: Full=tRNA [GM37]
           methyltransferase; AltName: Full=tRNA methyltransferase
           5
 gi|75947608|gb|AAI05168.1| TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) [Bos taurus]
 gi|296482975|gb|DAA25090.1| tRNA methyltransferase 5 [Bos taurus]
          Length = 497

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 102/272 (37%), Gaps = 21/272 (7%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + MF   +  KE + I   +  +  I+   +++     + E +LRA L +   +TS    
Sbjct: 141 YKMFTVDSFEKEELSILKQLNVNPQISKYNLDLTYENFKSEEILRAVLPEGQDVTS--GF 198

Query: 117 AIVTLIYHRLLDDAWRECA----IRLRDALHARKYQIQLIGRANKTKICLDRD--YVDER 170
           + V  I H  L D            + D        +  I   + T    + +    +E 
Sbjct: 199 SRVGHIAHLNLRDHQLPYKHLIGQVMIDKNPGITSAVNKINNIDNTYRNFEMEVLSGEEN 258

Query: 171 LTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVL 227
           +    R   Y   E  F++   N  ++    E          GD+L +++ G G F++  
Sbjct: 259 MMTKVRENNYTY-EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAIPA 314

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
           A+    V A ++   S +   +N   N V+  VK+  +  ++F Q   RE    +L  + 
Sbjct: 315 AKKKCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGRDFLQGPVREELMQQLGPLS 374

Query: 287 IHSYRFKTIFVDPPRSGLD--DATVGMVQAYP 316
                   I ++ P   ++   A   +++  P
Sbjct: 375 KERKHSVHIVMNLPAKAIEFLSAFKALLEGQP 406


>gi|254821111|ref|ZP_05226112.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 220

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            LAA    + D+L+  CG    SL LA     V+ V++   +V AA  +     +     
Sbjct: 30  ALAAAGKFRSDVLDAGCGVAELSLSLAAQGYTVVGVDLTPTAVAAATKSAQERGLTRASF 89

Query: 262 VRMS 265
           V+  
Sbjct: 90  VQAD 93


>gi|302783749|ref|XP_002973647.1| hypothetical protein SELMODRAFT_99851 [Selaginella moellendorffii]
 gi|300158685|gb|EFJ25307.1| hypothetical protein SELMODRAFT_99851 [Selaginella moellendorffii]
          Length = 417

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +L+L C  G F+L  A     RV+ V+ +K +++ A  NI+ N+++  +++     +
Sbjct: 241 DKTILDLCCYTGAFALNAAITGASRVIGVDSSKSAIDLADANISLNNID-PQVITFEKAD 299

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             Q M+                 +  + +DPP+       +    
Sbjct: 300 IVQYMKAALS---------KGETWDVVVLDPPKLAPSRKFLEKAA 335


>gi|312070450|ref|XP_003138152.1| hypothetical protein LOAG_02567 [Loa loa]
 gi|307766689|gb|EFO25923.1| hypothetical protein LOAG_02567 [Loa loa]
          Length = 460

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 9/121 (7%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           +   +D   E +    R  +Y      F   N       +    +     Q  + +++ G
Sbjct: 112 LLYGKDGWVEHIDGDIR-FLYDVT-KCFFNVNNASEKQRI----SEFDCHQEVITDMFAG 165

Query: 220 NGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRRE 276
            G + L   ++ H   V A+E  + ++EA R ++ +N V +   I++  S++ T     +
Sbjct: 166 IGYYVLPYLVSAHAKHVYAIEWNEDAIEALRRSLQSNGVQDRCTIIQGDSRKVTPQGVAD 225

Query: 277 R 277
           R
Sbjct: 226 R 226


>gi|266622193|ref|ZP_06115128.1| hydrogenase-4, F subunit [Clostridium hathewayi DSM 13479]
 gi|288866097|gb|EFC98395.1| hydrogenase-4, F subunit [Clostridium hathewayi DSM 13479]
          Length = 401

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 17/124 (13%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
              +          +L+ +   G+F+L   LA     VL V+ ++  V  A  N A N +
Sbjct: 212 YNRLAIQRLCPGKRVLDCFTHTGSFALNAGLA-GASSVLGVDASELGVAQAEENAALNGL 270

Query: 257 -NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQA 314
            + V        E             L +++    +F  + +DPP       +    V+ 
Sbjct: 271 SDTVHFRCADVFEL------------LPELERQGEKFDVVILDPPAFTKSRSSVKNAVKG 318

Query: 315 YPHI 318
           Y  I
Sbjct: 319 YREI 322


>gi|227495842|ref|ZP_03926153.1| possible 16S rRNA methyltransferase [Actinomyces urogenitalis DSM
           15434]
 gi|226834599|gb|EEH66982.1| possible 16S rRNA methyltransferase [Actinomyces urogenitalis DSM
           15434]
          Length = 202

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +L+ V        G  L+L CG G  +L LA       VLA ++ + S+E    N A
Sbjct: 46  TQVLLDHV--PDPPETGTFLDLGCGWGPITLALADAAPQAHVLAADVNERSLELTARNAA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           A   + V+ V+  ++E    +R                R   I+ +PP     +A   ++
Sbjct: 104 AAGHHQVRAVQ--AEELLAELRE------------TGQRLDLIWSNPPVRIGKEALHELL 149

Query: 313 QAY 315
             +
Sbjct: 150 GTW 152


>gi|147856392|emb|CAN80307.1| hypothetical protein VITISV_043558 [Vitis vinifera]
          Length = 477

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQ 271
           + +++ G G F++  A+    V A ++   S+   + N   N V +N+    M +++F  
Sbjct: 246 ICDMFSGVGPFTIPAAQKGCLVYANDLNPDSIRYLKINAKINKVDDNIWAYNMDARKFIS 305

Query: 272 AMRREREFNRLKDIDIHSYRFK 293
            +        L + D+   +  
Sbjct: 306 QLMEVPVHEILPEPDVPVLKAT 327


>gi|237747504|ref|ZP_04577984.1| 3-demethylubiquinone-9 3-methyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229378855|gb|EEO28946.1| 3-demethylubiquinone-9 3-methyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 231

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 63/145 (43%), Gaps = 15/145 (10%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +N   L+W+ A       ++L++ CG G  S  LA+    V  +++A+ ++E AR + 
Sbjct: 29  HDLNPVRLQWIAAQVPLDGKNVLDIGCGGGILSESLAQANASVTGIDLAENALETAREHG 88

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             + +  ++ + +S++EF +    + +     ++  H     +I           A   +
Sbjct: 89  KKSGLA-IRYLAVSAEEFAKQEPEQYDVITCMELLEHVPDPGSIVN---------ACSKL 138

Query: 312 VQAYPHILYISCNPDSLCRDLSILS 336
           V+   H+ +      +L R+L  L 
Sbjct: 139 VKPGGHVFF-----ATLNRNLKSLC 158


>gi|317056575|ref|YP_004105042.1| type 11 methyltransferase [Ruminococcus albus 7]
 gi|315448844|gb|ADU22408.1| Methyltransferase type 11 [Ruminococcus albus 7]
          Length = 254

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L+L CG G  SL  AR    V+ ++I K  ++ A  N   N ++N K +    ++ 
Sbjct: 44  RILDLACGYGRHSLEFARRGYEVVGIDITKIYIDDAVKNAHGNGLDNAKFLCCDIRDV 101


>gi|57641442|ref|YP_183920.1| ribosomal RNA small subunit methyltransferase C [Thermococcus
           kodakarensis KOD1]
 gi|57159766|dbj|BAD85696.1| ribosomal RNA small subunit methyltransferase C [Thermococcus
           kodakarensis KOD1]
          Length = 195

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L+L CG G   +V +R  D V+  ++ + +V  A+ N+  N V N ++   S  E  
Sbjct: 58  WRVLDLGCGYGPIGIVASRFVDYVVMTDVNRRAVSIAKKNLKINGVRNAEVRWGSLYE-- 115

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                           +   +F +I  +PP     +    +V   P 
Sbjct: 116 ---------------PVAGEKFDSIITNPPVHAGKEVLREIVINAPR 147


>gi|158314418|ref|YP_001506926.1| methyltransferase type 11 [Frankia sp. EAN1pec]
 gi|158109823|gb|ABW12020.1| Methyltransferase type 11 [Frankia sp. EAN1pec]
          Length = 260

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 30/84 (35%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            G     L  V        G LL+L CG G  ++ LA      + V+     +  A    
Sbjct: 18  PGYPTAFLTEVARRFSLPGGRLLDLGCGPGTLTIALAGRVREAVGVDPEPDMLAEATQQA 77

Query: 252 AANHVNNVKIVRMSSKEFTQAMRR 275
           +   + N++ V   ++     + R
Sbjct: 78  SLAGIRNIRWVEARAENLPPDLGR 101


>gi|85058487|ref|YP_454189.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|84779007|dbj|BAE73784.1| putative RNA methyltransferase [Sodalis glossinidius str.
           'morsitans']
          Length = 262

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 51/177 (28%), Gaps = 31/177 (17%)

Query: 26  LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK--ERMRIDYFMPGSLLI 83
               VP++    S    YR R    + +     +  M  +Q K  E + I         +
Sbjct: 115 QPGAVPDVAQIGSSAYCYRRRTRLGLVYRPKGCHLSMGYRQAKSSELVDIHACPILRPEL 174

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
             L+  + A +     + A L  ++   + +   +V     R L     E   RL D L 
Sbjct: 175 EQLIAPLRACLEGLRAV-AHLGHVELAAADNGPLVVV----RHLQPLGEEDRRRLLDCLR 229

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
                 ++                          L  R     F Q N  +N  M+ 
Sbjct: 230 GEPPFYRIAA------------------------LTLRFSPRDFIQINDEVNRQMVA 262


>gi|171320567|ref|ZP_02909591.1| PUA domain containing protein [Burkholderia ambifaria MEX-5]
 gi|171094194|gb|EDT39277.1| PUA domain containing protein [Burkholderia ambifaria MEX-5]
          Length = 404

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 69/203 (33%), Gaps = 28/203 (13%)

Query: 129 DAWRECAIRLRDALHA-------RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           +AW+E  +                   I+      +T   L  D     L      + Y 
Sbjct: 142 EAWKEAIVAALTGATGCPNVYERSDVSIRDKEGLEQTTGVLAGDAPPATLIANENGVRYH 201

Query: 182 QIENSFTQPNAGINVHMLEW----VLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLA 236
                   PN       ++      L A      D+L  +C  G FSL  L     RV++
Sbjct: 202 VDV-----PNGHKTGFYVDQRDNRALVAQYAADRDVLNCFCYTGGFSLAALKGGAKRVVS 256

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           ++ +  ++  A+ N+ AN  +  +   + +  F       +   RL D      RF  I 
Sbjct: 257 IDSSGDALALAQQNVVANGFDAERATWLDADAF-------KTLRRLVD---EGERFDLIV 306

Query: 297 VDPPRSG-LDDATVGMVQAYPHI 318
           +DPP+     D+     +AY  I
Sbjct: 307 LDPPKFAPTRDSVDRAARAYKDI 329


>gi|257387260|ref|YP_003177033.1| methyltransferase [Halomicrobium mukohataei DSM 12286]
 gi|257169567|gb|ACV47326.1| methyltransferase [Halomicrobium mukohataei DSM 12286]
          Length = 360

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVK 260
                 G +  +L+++ G G F+L +AR    V AVE    S      N+  N   + V+
Sbjct: 201 AARHATGERERVLDMFAGIGYFTLPMARAGATVTAVERNPVSFRYLIENVQLNEVADRVQ 260

Query: 261 IVRMSSKEFTQAMRRER 277
             R   ++ T  +  + 
Sbjct: 261 PYRADCRDVTPDLAADP 277


>gi|78067907|ref|YP_370676.1| SAM-dependent methyltransferase [Burkholderia sp. 383]
 gi|77968652|gb|ABB10032.1| 23S rRNA m(5)C-1962 methyltransferase / SAM-dependent
           methyltransferase [Burkholderia sp. 383]
          Length = 404

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  
Sbjct: 220 RALVAQYAADRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAE 279

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 280 RATWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 329


>gi|308234160|ref|ZP_07664897.1| SAM-dependent methyltransferase [Atopobium vaginae DSM 15829]
 gi|328944417|ref|ZP_08241879.1| methyltransferase [Atopobium vaginae DSM 15829]
 gi|327491001|gb|EGF22778.1| methyltransferase [Atopobium vaginae DSM 15829]
          Length = 430

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 211 GDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+ +   G F+L  A      V AV+I++ +++ A+ N   NHV    IV  S  + 
Sbjct: 250 KRVLDCFSHVGPFALNAAVAGAKTVRAVDISELALKLAQENARLNHVE--HIVHCSCADV 307

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHILY 320
              +R+  +             F  I +DPP      +T+   ++ Y  I Y
Sbjct: 308 LDYLRKLEQDKNYAH--AEGGPFDVIILDPPAFTKSRSTISSAMRGYKEINY 357


>gi|167534001|ref|XP_001748679.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772920|gb|EDQ86566.1| predicted protein [Monosiga brevicollis MX1]
          Length = 454

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 25/237 (10%)

Query: 131 WRECAIRL-RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           W   A  L ++ +  R+     + R  + ++ L  D   E +    R   Y      F+ 
Sbjct: 163 WACVAGALGKERVAIRRAIADNLRREAQVELVLGADGWVEHVDNRVR-YTYDVTRCMFSA 221

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAA 247
            N  I+  +    L     +   +++L+ G G F+L   +      + A E    +VEA 
Sbjct: 222 GN--ISEKLRVAALPCADEV---VVDLFAGIGYFTLPYLVHARARFLHACEWNPHAVEAL 276

Query: 248 RYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-- 304
           R N+  N   +  ++    +++       +R    L      S+      + P R G+  
Sbjct: 277 RRNLKLNQVADRCEVHEGDNRQVAPVGCADRVNLGLIPTSKESWATALACLRPDRGGMLH 336

Query: 305 --DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG 359
             ++ T G  +    +  +      LC DL+ LS       +          H+EC 
Sbjct: 337 VHENVTTGEGEQNEAVWALF--GAQLCADLTALSAGRVACTVQ---------HIECV 382


>gi|332981031|ref|YP_004462472.1| 16S rRNA m(2)G 1207 methyltransferase [Mahella australiensis 50-1
           BON]
 gi|332698709|gb|AEE95650.1| 16S rRNA m(2)G 1207 methyltransferase [Mahella australiensis 50-1
           BON]
          Length = 201

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 31/119 (26%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    + G +L++ CG G   + +A+ +    V+ V+I   +VE A+ NI  N +NN  +
Sbjct: 52  ALPDRLSGRVLDMGCGYGAIGISIAKAYQDVEVVMVDINSRAVELAQGNIKLNSINNATV 111

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            +       + +                  F  I  +PP           ++A   ++Y
Sbjct: 112 YQSDGFAQVEGL------------------FDIIVSNPP-----------IRAGKRVVY 141


>gi|104780101|ref|YP_606599.1| methylase of polypeptide chain release factors [Pseudomonas
           entomophila L48]
 gi|95109088|emb|CAK13785.1| Methylase of polypeptide chain release factors [Pseudomonas
           entomophila L48]
          Length = 276

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 21/126 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA      +V AV+  + +V  A  N  
Sbjct: 94  TELLVETALELVPAKPARVLDLGTGTGAIALALASECPAWQVTAVDRIEEAVALAERNRQ 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGLDDATVG 310
              + NV++    +  +  A+  E               F  I  +PP  R+       G
Sbjct: 154 RLGLGNVQV---RASHWYDALEGE--------------HFDLILSNPPYIRAADPHLVAG 196

Query: 311 MVQAYP 316
            V+  P
Sbjct: 197 DVRFEP 202


>gi|309776359|ref|ZP_07671346.1| putative methyltransferase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915878|gb|EFP61631.1| putative methyltransferase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 415

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G+F+L  AR     V AV+I++ +++ A+ +   NH+ 
Sbjct: 230 YNRAAIARIAKGKHVLDCFTHTGSFALNAARGGAKHVHAVDISQTAIDMAQEHAKRNHL- 288

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP 316
                     E   +      F  LK++      +  I +DPP       T+   V+ Y 
Sbjct: 289 ----------EERMSFETADVFELLKELKKQPRIYDMIILDPPAFTKSRETISHAVKGYR 338

Query: 317 HI 318
            I
Sbjct: 339 QI 340


>gi|295675161|ref|YP_003603685.1| PUA domain containing protein [Burkholderia sp. CCGE1002]
 gi|295435004|gb|ADG14174.1| PUA domain containing protein [Burkholderia sp. CCGE1002]
          Length = 400

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L        D+L  +C  G FSL  L     RV++V+ +  ++  A+ N+AAN  +  
Sbjct: 216 RLLVQQFAKDRDVLNCFCYTGGFSLAALKGGAKRVVSVDSSGEALALAQQNVAANGFDVD 275

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F       +   RL D      RF  I +DPP+  
Sbjct: 276 RASWLDADAF-------KTLRRLYD---EGERFDLIVLDPPKFA 309


>gi|332670095|ref|YP_004453103.1| methyltransferase small [Cellulomonas fimi ATCC 484]
 gi|332339133|gb|AEE45716.1| methyltransferase small [Cellulomonas fimi ATCC 484]
          Length = 203

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 22/117 (18%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A     QGDLL+L CG G  +L LA      RV AV++ + +++  R N AA  + NV  
Sbjct: 55  APPAPAQGDLLDLGCGWGPVALSLALESPDARVWAVDVNERALDLVRRNAAALGLANVVA 114

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPH 317
                               L D      RF TI  +PP R G D     +++  P 
Sbjct: 115 A-------------------LPDDVPDDVRFATIRSNPPIRVGKDALHTLLLRWLPR 152


>gi|330445231|ref|ZP_08308883.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489422|dbj|GAA03380.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 284

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 64/202 (31%), Gaps = 40/202 (19%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +     + LDDA  E    L             I       I  +R++    L V+  TL
Sbjct: 43  LLTWPEKQLDDAQYEAFQALLTR---------RINGEPVAYIIGEREFWSLSLKVSPSTL 93

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLA 236
           I R                ++E  L         +L+L  G G  +L +A      +V  
Sbjct: 94  IPRPD-----------TERLVELALEKISASATKVLDLGTGTGAIALAIASECPMLQVTG 142

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +++ + + + A  N     ++N + +  S                       +  F  I 
Sbjct: 143 IDLRQEAADLALENSQRLSISNTRFLAGS----------------WYSPLQQNETFDVIV 186

Query: 297 VDPPRSGLDDATVGMVQAYPHI 318
            +PP   +D+A   +VQ     
Sbjct: 187 SNPPY--IDEADPHLVQGDVRF 206


>gi|209694373|ref|YP_002262301.1| protein methyltransferase HemK [Aliivibrio salmonicida LFI1238]
 gi|208008324|emb|CAQ78476.1| protein methyltransferase HemK [Aliivibrio salmonicida LFI1238]
          Length = 288

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I   R++    L V+  TLI R                ++E  L         +L+L  G
Sbjct: 75  IIGYREFWSLPLKVSPTTLIPRPD-----------TERLVEVALEHLSPSSEKVLDLGTG 123

Query: 220 NGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L +A       V+ V+    +V  A+ N   N++ N +  + S            
Sbjct: 124 TGAIALAIASEMPDMCVIGVDYQYDAVALAKDNAKDNNILNTEFRQGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                 D      +F  I  +PP
Sbjct: 172 ----WFDPIRMDEQFSIIVSNPP 190


>gi|297565875|ref|YP_003684847.1| hypothetical protein Mesil_1446 [Meiothermus silvanus DSM 9946]
 gi|296850324|gb|ADH63339.1| conserved hypothetical protein [Meiothermus silvanus DSM 9946]
          Length = 390

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 13/97 (13%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+++  +G+F+L LA +F RV+AV+ +  ++  A+ N AAN +  ++    ++ EF +  
Sbjct: 222 LDVFSYHGSFALHLAANFSRVVAVDSSADALRRAQENAAANRL-GLETREANAFEFLREQ 280

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            ++R              +  I +DPP        + 
Sbjct: 281 EKQRNL------------YDLIVLDPPAFAKSKRDLE 305


>gi|226946180|ref|YP_002801253.1| Modification methylase HemK [Azotobacter vinelandii DJ]
 gi|226721107|gb|ACO80278.1| Modification methylase HemK [Azotobacter vinelandii DJ]
          Length = 276

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 19/119 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  LA       ++L+L  G+G  +L LA  R   R+  V+    +V  A  N  
Sbjct: 94  TELLVETALALLPATPAEVLDLGTGSGAIALALAAERPAWRLTGVDRVMEAVALAERNRR 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
              + N   +                        +   RF  I  +PP    DD  + +
Sbjct: 154 RLGLGNATFLPSD-----------------WFSALDGRRFALIAGNPPYIAADDPHLAL 195


>gi|317502782|ref|ZP_07960888.1| ribosomal protein L11 methyltransferase [Prevotella salivae DSM
           15606]
 gi|315666093|gb|EFV05654.1| ribosomal protein L11 methyltransferase [Prevotella salivae DSM
           15606]
          Length = 305

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA 253
              M+   L         +L+  CG G   +  L      V+  +I + SVE A++N   
Sbjct: 154 TTRMIVSTLLHFDLTDKRVLDCGCGTGILGIVALKYGAKSVVGYDIDEWSVENAKHNAEI 213

Query: 254 NHVNNVKIVRMSS 266
           N+V N++I +  +
Sbjct: 214 NNVENIEIYQGDA 226


>gi|302387707|ref|YP_003823529.1| RNA methylase [Clostridium saccharolyticum WM1]
 gi|302198335|gb|ADL05906.1| putative RNA methylase [Clostridium saccharolyticum WM1]
          Length = 401

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 72/232 (31%), Gaps = 36/232 (15%)

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD- 163
           F    +  +    +V       +D        +L+  L     +IQ I   +  K+ L  
Sbjct: 109 FLPGIVVDKFGHVLVVESLALGIDRLKPVILEKLKKVLKEDGIEIQGIYERSDAKVRLQE 168

Query: 164 -----RDYV----DERLTVAGRTLIYRQIEN-----SFTQPNAGINVHMLEWVLAATKGI 209
                + ++    D ++ +    + Y           F              +       
Sbjct: 169 GMERIKGFIGPSFDTKVEITENGVKYLVDVQDGQKTGFF------LDQKYNRLAIQRLCK 222

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
              +L+ +   G+F+L         VL V+ ++  +  A+ N   N +++ V        
Sbjct: 223 DKRVLDCFTHTGSFALNAGIAGAREVLGVDASELGIAQAKENAELNGLSHRVAFQCADV- 281

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                      F  L +++ +  +F  + +DPP       +    V+ Y  I
Sbjct: 282 -----------FELLPELEKNGEKFDVVILDPPAFTKSRNSVKNAVKGYREI 322


>gi|83590481|ref|YP_430490.1| hypothetical protein Moth_1645 [Moorella thermoacetica ATCC 39073]
 gi|83573395|gb|ABC19947.1| hypothetical protein Moth_1645 [Moorella thermoacetica ATCC 39073]
          Length = 292

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++L++ CG GN++L LAR   RV+A++ A   +   +   AA  +NNV+ ++M+ +E   
Sbjct: 79  EVLDIGCGTGNYALPLARRARRVVALDPAAEMLAILKEKAAAEGINNVEPIQMAWEEVDL 138

Query: 272 AMRREREFNRL 282
             +  RE   L
Sbjct: 139 EKQGWREAFDL 149


>gi|150402477|ref|YP_001329771.1| methyltransferase small [Methanococcus maripaludis C7]
 gi|150033507|gb|ABR65620.1| methyltransferase small [Methanococcus maripaludis C7]
          Length = 380

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L         +L++    G F++    +   V AV++++ ++  A  N+  N V N   +
Sbjct: 201 LENYVKPGDKVLDVCSYTGGFAVHAGINGGNVTAVDLSEKALAVAEENMELNGVKNYNFI 260

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++ +  + M +  E            +F  + +DPP
Sbjct: 261 VSNAFDAMKEMIKNNE------------KFDVVVLDPP 286


>gi|315038377|ref|YP_004031945.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus
           amylovorus GRL 1112]
 gi|312276510|gb|ADQ59150.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus
           amylovorus GRL 1112]
          Length = 88

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPH-ILYISCNPDSLCRDLSILST-THTIERLALFDQ 349
             I    P+ GL    +   V+  P   +Y+S NPD+L  DL +     +  + +   D 
Sbjct: 12  SVIIATAPKKGLLKGFIEASVKMQPREFIYLSFNPDTLVCDLKLFKQNGYETKAITPIDV 71

Query: 350 FPYTRHMECGVLLVRKP 366
            P T  M C   L ++ 
Sbjct: 72  APQTPDMMCICRLDKEN 88


>gi|206558905|ref|YP_002229665.1| hypothetical protein BCAL0504 [Burkholderia cenocepacia J2315]
 gi|198034942|emb|CAR50814.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 404

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  
Sbjct: 220 RALVAQYAADRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAE 279

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 280 RATWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 329


>gi|186474844|ref|YP_001856314.1| PUA domain-containing protein [Burkholderia phymatum STM815]
 gi|184191303|gb|ACC69268.1| PUA domain containing protein [Burkholderia phymatum STM815]
          Length = 400

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 23/170 (13%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQI-----ENSFTQPNAGINVHMLEWVLAATKGIQ 210
           ++T   L  D   E L  +   + Y        +  F   +   N  +++ +        
Sbjct: 172 DQTVGVLAGDAPPETLIASENGVRYHVDVRDGHKTGFY-VDQRDNRALVQEL-----SKD 225

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN     +   + +  F
Sbjct: 226 RDVLNCFCYTGGFSLAALKGGARRVVSIDSSGEALALAQQNVTANGFEPARATWLDADAF 285

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            + +RR  E            RF  I +DPP+     +      +AY  I
Sbjct: 286 -KTLRRLYE---------EGERFDLIVLDPPKFAPSREHVDRAARAYKDI 325


>gi|331270010|ref|YP_004396502.1| 50S ribosomal protein L11 methyltransferase [Clostridium botulinum
           BKT015925]
 gi|329126560|gb|AEB76505.1| ribosomal protein L11 methyltransferase [Clostridium botulinum
           BKT015925]
          Length = 312

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 5/149 (3%)

Query: 141 ALHARKYQIQLIGRANKTKI---CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
            +  + +          TKI    + +   +E +      +I      +F          
Sbjct: 107 KVDEQDWANNWKKYYKPTKIGNEIVVKPTWEEYIKKDDEIVIELDPGMAFG-TGTHETTR 165

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV 256
           +    L         + ++  G+G  S+  A+ +   V+ V++   +V+AA+ N+  N++
Sbjct: 166 LCVKALEEYVKEDSVVFDIGTGSGILSIAAAKLNAKHVVGVDLDPVAVDAAKENVQLNNL 225

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           NN++I+  +  E           N L DI
Sbjct: 226 NNIEILYGNLMEVVNGKATIIVANILADI 254


>gi|301308352|ref|ZP_07214306.1| putative protein-(glutamine-N5) methyltransferase, release
           factor-specific [Bacteroides sp. 20_3]
 gi|300833822|gb|EFK64438.1| putative protein-(glutamine-N5) methyltransferase, release
           factor-specific [Bacteroides sp. 20_3]
          Length = 318

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 90/240 (37%), Gaps = 28/240 (11%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           I   + ++      + L+R  + ++  L++      + L   + L D  +     + + L
Sbjct: 8   IRNSLKDIYPPGEAQALVRLIMERVCGLSTHQ----LLLGKGKELSDTEKFKIKEIVEGL 63

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
              K    L+G A         D+      V    LI R                ++E +
Sbjct: 64  RLYKPIQYLLGIA---------DFYGIEFKVTPDVLIPRPE-----------TAELVERI 103

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +   +G    +L++  G+G  ++ LA+H     V AV+I+  ++  A  N   N V+ V 
Sbjct: 104 ITDYRGQAPRILDIGTGSGCIAISLAKHLPKAEVAAVDISPEALAVAEENARLNQVS-VS 162

Query: 261 IVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
            + +    E   +  + +    +++  +     K+     P+S  ++  V  +  +  I+
Sbjct: 163 FLELDILSEGYPSFMQGKLKFHVEETKVSRKENKSFTYMKPKSHTEETAVSPIGNFNCIV 222


>gi|299769518|ref|YP_003731544.1| methylase of polypeptide chain release factor [Acinetobacter sp.
           DR1]
 gi|298699606|gb|ADI90171.1| methylase of polypeptide chain release factor [Acinetobacter sp.
           DR1]
          Length = 271

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 19/178 (10%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L A++ Q  L G            +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTAQQEQDYLAGLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSV 244
                      ++E VL  T     ++++L  G G  +L LA  R    V A +I  P++
Sbjct: 92  --------TEILVETVLNLTLPNTANIVDLGTGTGAIALALASERPDWFVTATDIYAPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           E A+ N  A+++  VK    +  E  +  + +   +    ID      + +  +P R+
Sbjct: 144 EVAKENALAHNLQRVKFACGAWFEALEPQKFDLIVSNPPYIDPEDEHMQALATEPRRA 201


>gi|224543831|ref|ZP_03684370.1| hypothetical protein CATMIT_03052 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523250|gb|EEF92355.1| hypothetical protein CATMIT_03052 [Catenibacterium mitsuokai DSM
           15897]
          Length = 407

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 15/123 (12%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G F+L         VL V+ ++ +V+ A  N   N + 
Sbjct: 218 YNRLAIQKLCKDAKVLDCFTYIGTFALNAGIAGAQSVLGVDASQFAVDLANENSKFNGLE 277

Query: 258 N-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAY 315
           + VK       +F            L +++     F  + +DPP      A++   ++ Y
Sbjct: 278 DTVKFECHDVFDF------------LPELEAQGELFDMVILDPPAFTKSRASIKNAIKGY 325

Query: 316 PHI 318
             I
Sbjct: 326 REI 328


>gi|116621606|ref|YP_823762.1| type 11 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224768|gb|ABJ83477.1| Methyltransferase type 11 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 252

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                 ++ +LA +    G +L+L CG G  S+ LA     V  V+     +  AR + A
Sbjct: 24  AAAAEQVDQILALSGIHSGAVLDLCCGAGRHSVALAHKGFAVTGVDRTPYLLNRARAHAA 83

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFN 280
            + + N++ V    +EF ++   +   N
Sbjct: 84  DSGL-NIEFVLEDMREFRRSGAFDLAIN 110


>gi|296124262|ref|YP_003632040.1| hypothetical protein Plim_4030 [Planctomyces limnophilus DSM 3776]
 gi|296016602|gb|ADG69841.1| protein of unknown function Met10 [Planctomyces limnophilus DSM
           3776]
          Length = 552

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 25/146 (17%)

Query: 162 LDRDYVDERLTVAGRTLIYR-QIENS----FTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
              +   E + V    + Y  Q E+     F                 A       +L+L
Sbjct: 303 FGSENAPESVQVVENGVKYEVQFEDGHKTGFF------CDQRQNRARVAELAAGQRVLDL 356

Query: 217 YCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            C +G F+L  A      V  V++ + ++  A+ N   N             +       
Sbjct: 357 CCYSGGFALSAAVSGAKSVHGVDLDEAAIAVAKKNAKLN-------------KVQIEWAH 403

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPR 301
              F  +++      ++  + +DPP+
Sbjct: 404 ADIFAWMREAQKQGQQWDIVVLDPPK 429


>gi|239501458|ref|ZP_04660768.1| methyl transferase [Acinetobacter baumannii AB900]
          Length = 273

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 19/178 (10%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L A++ Q  L              +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTAQQEQDYLASLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSV 244
                      ++E VL        ++++L  G G  +L LA  R    V A +I  P++
Sbjct: 92  --------TEVLVETVLNLNLPKNANIVDLGTGTGAIALALASERPDWFVTATDIYAPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           + A+ N   + +++VK    +  E  +  + +   +    ID      + +  +P R+
Sbjct: 144 DVAKENAQTHGLHHVKFACGAWFEALEPQQFDLIVSNPPYIDPEDEHMQALATEPRRA 201


>gi|196234488|ref|ZP_03133313.1| deoxyribonuclease/rho motif-related TRAM [Chthoniobacter flavus
           Ellin428]
 gi|196221469|gb|EDY16014.1| deoxyribonuclease/rho motif-related TRAM [Chthoniobacter flavus
           Ellin428]
          Length = 218

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 9/97 (9%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQ-----VPNLQIFRSEPIHYRMRAEFHIWHDGD 56
             +     Y +QL  K  ++ Q +              +   +P  YR R   H     +
Sbjct: 79  GCSYQHITYARQLQIKAAQVEQTLRRVGRMETVPMRPIVAAPQPYGYRNRIRVH----SE 134

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMAT 93
                 F Q     + I+  +     +N  +  +  T
Sbjct: 135 GGVTGFFAQDAHVLVDIEQCLLAVPEVNRALKRLRDT 171


>gi|329296265|ref|ZP_08253601.1| release factor-specific protein-(glutamine-N5) methyltransferase
           [Plautia stali symbiont]
          Length = 276

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 40/213 (18%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     + ++T +S   ++      L D    +    L   +                 +
Sbjct: 22  RDAEILLGFVTGKSRSGLIAFDDSPLNDAQLAQLETLLARRVRGEPIAH----------L 71

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
             +R++    L V+  TLI R                ++E  L         +L+L  G 
Sbjct: 72  VGEREFWSLPLRVSDATLIPRPD-----------TEVLVEQALLRLPATPSAVLDLGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G  +L LA  R   ++   +    +V  A+ N    H+ N   V                
Sbjct: 121 GAIALALASERPDCQITGCDRIAAAVALAQDNAQRLHLTNAGFV---------------- 164

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            +   D D+ + RF  I  +PP     D  +  
Sbjct: 165 LSHWFD-DLPAQRFDLIVSNPPYIDAADEHLQQ 196


>gi|297738868|emb|CBI28113.3| unnamed protein product [Vitis vinifera]
          Length = 983

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQ 271
           + +++ G G F++  A+    V A ++   S+   + N   N V +N+    M +++F  
Sbjct: 225 ICDMFSGVGPFAIPAAQKGCLVYANDLNPDSIRYLKINAKINKVDDNIWAYNMDARKFIS 284

Query: 272 AMRREREFNRLKDIDIHSYRFK 293
            +        L + D+   +  
Sbjct: 285 QLMEVPVHEILPEPDVPVLKAT 306


>gi|51894217|ref|YP_076908.1| hypothetical protein STH3082 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857906|dbj|BAD42064.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 206

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 20/107 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + A   G    +L+L CG G   +V AR      +  VEI + + E AR N+ AN + N 
Sbjct: 50  IEAMEIGPADTVLDLGCGYGPIGIVAARLAPQGFIYMVEINERAAELARRNLEANAIANA 109

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
           ++      E                  +    F  +  +PP R+G  
Sbjct: 110 EVRVGDGLE-----------------PVAGIAFDAVVTNPPIRAGKA 139


>gi|240172077|ref|ZP_04750736.1| hypothetical protein MkanA1_22365 [Mycobacterium kansasii ATCC
           12478]
          Length = 228

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L       GD+L+  CG    SL LA      + ++++  ++E AR   A   ++N   
Sbjct: 39  ALIEQGKFHGDVLDAGCGEAAISLQLAELGYTTVGLDLSPTAIELARAEAAKRGLSNATF 98

Query: 262 VRMSSKEFT 270
                 +FT
Sbjct: 99  AVADISDFT 107


>gi|291406535|ref|XP_002719574.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Oryctolagus
           cuniculus]
          Length = 553

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 103/306 (33%), Gaps = 29/306 (9%)

Query: 14  LAEKVDRLRQMMLAFQVPNLQ------IFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT 67
           L  K + + ++M A +   LQ      +            E  +              + 
Sbjct: 147 LKVKKEIVNRLMRALKRVALQRPGVKRVIEDPADG-----ESRLVLLDPRKVLGHDSFE- 200

Query: 68  KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRL 126
           K  + +   +     I    +E+     + E +LRA L +   +TS   +  V  I H  
Sbjct: 201 KAELSVLKQLNVHPQIAEYNLELTYENFKSEEILRAVLPEGQDVTSSFSR--VGHIAHLN 258

Query: 127 LDDAWRECA----IRLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLTVAGRTLIY 180
           L D            + D        +  I   + T      +    +E +    R   Y
Sbjct: 259 LRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEENMMAKVRENNY 318

Query: 181 RQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAV 237
              E  F++   N  ++    E          GD+L +++ G G F++  A+    V A 
Sbjct: 319 TY-EFDFSKVYWNPRLST---EHSRITDLLHPGDVLFDVFAGVGPFAIPAAKKNCTVFAN 374

Query: 238 EIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           ++   S +   +N   N V++ VKI  +  K+F Q   R     +L+      +    + 
Sbjct: 375 DLNPESHKWLLHNCKLNKVDHKVKIFNLDGKDFLQGPVRAELMQQLEPATERKHAVHIVM 434

Query: 297 VDPPRS 302
             P R+
Sbjct: 435 NLPARA 440


>gi|302787863|ref|XP_002975701.1| hypothetical protein SELMODRAFT_103822 [Selaginella moellendorffii]
 gi|300156702|gb|EFJ23330.1| hypothetical protein SELMODRAFT_103822 [Selaginella moellendorffii]
          Length = 417

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +L+L C  G F+L  A     RV+ ++ +K +++ A  NI+ N+++  +++     +
Sbjct: 241 DKTILDLCCYTGAFALNAAITGASRVIGIDSSKSAIDLADANISLNNID-PQVITFEKAD 299

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             Q M+                 +  + +DPP+       +    
Sbjct: 300 IVQYMKAALS---------KGETWDVVVLDPPKLAPSRKFLEKAA 335


>gi|260840790|ref|XP_002613805.1| hypothetical protein BRAFLDRAFT_124175 [Branchiostoma floridae]
 gi|229299195|gb|EEN69814.1| hypothetical protein BRAFLDRAFT_124175 [Branchiostoma floridae]
          Length = 1421

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 64/179 (35%), Gaps = 12/179 (6%)

Query: 131 WRECAIRLRDALHARKYQIQLIGR-ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           W+     L     ARK  IQ     + + ++ L  D+     T  G    +      F+ 
Sbjct: 159 WQLITESLGGTRLARKGTIQDDLYRSPRVELLLG-DHGWVGHTDNGIRYTFDVTRCMFSP 217

Query: 190 PNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEA 246
            N      + E +  A  G +G  +++LY G G F+L   +      V A E    +VEA
Sbjct: 218 GN------ITEKLRVARMGCEGQTVVDLYAGIGYFTLPFLVHGKAAEVHACEWNPAAVEA 271

Query: 247 ARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            + N+  N V +   +    +++       +R    L       +      + P   G+
Sbjct: 272 LQKNLQINKVQDRCTVHHGDNRQVCPRGVADRVNLGLIPSSRSGWPVACAALRPTTGGI 330


>gi|329936747|ref|ZP_08286454.1| DNA methylase [Streptomyces griseoaurantiacus M045]
 gi|329303977|gb|EGG47860.1| DNA methylase [Streptomyces griseoaurantiacus M045]
          Length = 195

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L  L+R    VL VE    +    R N  A  +   ++    +++  
Sbjct: 49  RVLDLYAGSGAVGLEALSRGAGHVLLVEADARAARTVRENARALGLPGAEVRAGKAEQTV 108

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +                 S  +  +F+DPP +  DDA   ++
Sbjct: 109 RTAP-------------PSDPYDLVFLDPPYAVRDDALREIL 137


>gi|312958851|ref|ZP_07773370.1| modification methylase [Pseudomonas fluorescens WH6]
 gi|311286621|gb|EFQ65183.1| modification methylase [Pseudomonas fluorescens WH6]
          Length = 276

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W E  +   DAL    Y  +         I   + +    L VA  TLI R         
Sbjct: 41  WPEKIVSSEDALTFAGYLQRRRAGEPVAYILGQQGFWKLDLEVAPHTLIPRPD------- 93

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
                  +++  L         +L+L  G+G  +L LA  R    V AV+    +V  A 
Sbjct: 94  ----TELLVDAALELLPATPTRVLDLGTGSGAIALALASERPAWHVTAVDRVLEAVALAE 149

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N    H++N  +                  N      +  +R+  I  +PP
Sbjct: 150 RNRQRLHLHNAMV-----------------LNSHWFSALQGHRYDLIISNPP 184


>gi|330829594|ref|YP_004392546.1| ribosomal RNA large subunit methyltransferase I [Aeromonas veronii
           B565]
 gi|328804730|gb|AEB49929.1| Ribosomal RNA large subunit methyltransferase I [Aeromonas veronii
           B565]
          Length = 397

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NV 259
            AA       +L  +C  G F +  L      V+ V++++ +++ AR N   N ++  N 
Sbjct: 215 AAAKYTEGKRVLNCFCYTGGFGVYALKGGAKEVVNVDLSQNALDIARQNAELNGLDTSNT 274

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
           + VR               F  L++       F  I +DPP+     A  +G  + Y  I
Sbjct: 275 QFVRHDV------------FKLLREYREKGENFDVIVLDPPKFAESKAQLLGACRGYKDI 322


>gi|315608028|ref|ZP_07883021.1| ribosomal protein L11 methyltransferase [Prevotella buccae ATCC
           33574]
 gi|315250497|gb|EFU30493.1| ribosomal protein L11 methyltransferase [Prevotella buccae ATCC
           33574]
          Length = 288

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
                 M+  +L      +  +L+  CG G   +  A+     V+  +I + SVE  R+N
Sbjct: 136 HETTRMMVSTLLNMDLDGK-RILDCGCGTGILGIAAAKMGAREVVGYDIDEWSVENTRHN 194

Query: 251 IAANHVNNVKIVRMSS 266
              NHV N ++    +
Sbjct: 195 AELNHVENFEVYHGDA 210


>gi|219853201|ref|YP_002467633.1| protein of unknown function Met10 [Methanosphaerula palustris
           E1-9c]
 gi|219547460|gb|ACL17910.1| protein of unknown function Met10 [Methanosphaerula palustris
           E1-9c]
          Length = 315

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+++ G G F++ LA    +V+A ++   +V   + N   N   N+  V   +      
Sbjct: 172 VLDMFAGAGPFAITLAGRASQVVACDLNPAAVLQMQVNARLNRCRNLLPVLADAGH---- 227

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                    LK I +     + +   P   G 
Sbjct: 228 ---------LKGIFLPGQFDRVVMNLPLSKGA 250


>gi|162448293|ref|YP_001610660.1| hypothetical protein sce0024 [Sorangium cellulosum 'So ce 56']
 gi|161158875|emb|CAN90180.1| hypothetical protein sce0024 [Sorangium cellulosum 'So ce 56']
          Length = 386

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 59/171 (34%), Gaps = 27/171 (15%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQI-----ENSFTQPNAGINVHMLEWVLAATKGIQGDLLE 215
            +  D   ++L    R L Y        +  F          +   V          +L+
Sbjct: 163 VVRGDPALDQLRFVERGLRYTIPLALGHKTGFY----LDQRTLRTRVEQLAHNR--RVLD 216

Query: 216 LYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAM 273
            +C  G F++  AR     VLA++ +  ++E        N  ++ +K  R  +++  Q  
Sbjct: 217 AFCFVGTFAMAAARGGASEVLAIDESATAIEVGAECARENGLLDRIKFTRDDARKALQNA 276

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQAYPHILYISC 323
            R+               +  +  DPP+ +G   +    + AY  +   +C
Sbjct: 277 SRQA-------------GYDLVICDPPKLAGTRASKDTALTAYRRLAAGAC 314


>gi|54309993|ref|YP_131013.1| putative HemK protein, methylase of polypeptide chain release
           factors [Photobacterium profundum SS9]
 gi|46914432|emb|CAG21211.1| putative HemK protein, Methylase of polypeptide chain release
           factors [Photobacterium profundum SS9]
          Length = 282

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           L +AL AR+   + +       I  +R++    L V+  TLI R                
Sbjct: 58  LFEALLARRITGEPVAY-----ILGEREFWSLPLKVSPFTLIPRPD-----------TER 101

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L +A  R+  +V  +++   + E A  N    +
Sbjct: 102 LVELALEKIPTQACTVLDLGTGTGAIALAIASERNDAQVTGIDLRPEAAELAAENGQRLN 161

Query: 256 VNNVKIVRMS 265
           + NV+ +  S
Sbjct: 162 IQNVRFLAGS 171


>gi|326921162|ref|XP_003206832.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Meleagris
           gallopavo]
          Length = 512

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 21/233 (9%)

Query: 80  SLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL 138
           S  ++   +E+     + E +LRA L +   +TS    + V  I H  L D        +
Sbjct: 175 SPEVSEYNLELTYENFKSEEILRAVLPEGQDVTS--GFSRVGHIAHVNLRDHQLPYRHLI 232

Query: 139 RDALHARKYQIQLIGRANKTKIC--LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
              +  +   I  +   NKT I     R++  E L      L+ +  EN+FT     ++ 
Sbjct: 233 GQVIVDKNPGITCVV--NKTNIIDSTYRNFQMEVL-AGESNLVTKVKENNFT---YELDF 286

Query: 197 HMLEWVLAATKG--------IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
             + W    +            GD+L +++ G G F++  A+    V A ++   S    
Sbjct: 287 AKVYWNPRLSTEHGRIVELLKPGDVLFDVFAGIGPFAIPAAKKKCVVFANDLNPESYNWL 346

Query: 248 RYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            +N   N V+N +K   M  ++F     RE     L  +      F  +   P
Sbjct: 347 LHNCKLNKVDNKIKAFNMDGRDFLLGPVREELRKELTLVKEQKTAFHIVMNLP 399


>gi|257468238|ref|ZP_05632334.1| tRNA (Uracil-5-) -methyltransferase [Fusobacterium ulcerans ATCC
           49185]
 gi|317062520|ref|ZP_07927005.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium ulcerans ATCC
           49185]
 gi|313688196|gb|EFS25031.1| tRNA (Uracil-5-)-methyltransferase [Fusobacterium ulcerans ATCC
           49185]
          Length = 164

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQV-----PNLQIFRSEPIHYRMRAEFHIWHDGD 56
                + +Y+ QL  K   +  ++              I   +P HYR +          
Sbjct: 81  GCDFGMLKYDAQLKYKKLMVEDVIKKIGKIENVSVEDVIGSEDPYHYRNKIIEPFRKSKG 140

Query: 57  DLYHIMFDQQTKERMRIDYFMPGS 80
           ++    F +++ +   ++  +  S
Sbjct: 141 EIISGFFKRKSHDVFEVEENILNS 164


>gi|167568328|ref|ZP_02361202.1| hypothetical protein BoklC_00709 [Burkholderia oklahomensis C6786]
          Length = 426

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+  N  +  
Sbjct: 242 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQQNVVTNGFDAA 301

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F + +RR  E            RF  I +DPP+     D+     +AY  I
Sbjct: 302 RAEWLDADAF-KTLRRLVE---------EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 351


>gi|167561110|ref|ZP_02354026.1| hypothetical protein BoklE_01034 [Burkholderia oklahomensis EO147]
          Length = 426

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+  N  +  
Sbjct: 242 RALVAQYARDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQQNVVTNGFDAA 301

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F + +RR  E            RF  I +DPP+     D+     +AY  I
Sbjct: 302 RAEWLDADAF-KTLRRLVE---------EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 351


>gi|167585123|ref|ZP_02377511.1| PUA domain containing protein [Burkholderia ubonensis Bu]
          Length = 402

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  
Sbjct: 218 RALVTQCANGRDVLNCFCYTGGFSLAALKGGAARVVSIDSSGDALALAQQNVVANGFDPA 277

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 278 RASWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 327


>gi|284039476|ref|YP_003389406.1| methyltransferase type 11 [Spirosoma linguale DSM 74]
 gi|283818769|gb|ADB40607.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
          Length = 270

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
             FT+  A +       V          +L+L CG+G  +L  A+    VL V+IA+  V
Sbjct: 11  GDFTKVAATMRESGTALVAQLEITKDMTILDLGCGDGTTALPEAKLGATVLGVDIARNLV 70

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +A      A  + N       + + + 
Sbjct: 71  DAGNRRANAEGLTNCTFQEGDACDLSD 97


>gi|225445326|ref|XP_002281488.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 506

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQ 271
           + +++ G G F++  A+    V A ++   S+   + N   N V +N+    M +++F  
Sbjct: 221 ICDMFSGVGPFAIPAAQKGCLVYANDLNPDSIRYLKINAKINKVDDNIWAYNMDARKFIS 280

Query: 272 AMRREREFNRLKDIDIHSYRFK 293
            +        L + D+   +  
Sbjct: 281 QLMEVPVHEILPEPDVPVLKAT 302


>gi|332157868|ref|YP_004423147.1| hypothetical protein PNA2_0225 [Pyrococcus sp. NA2]
 gi|331033331|gb|AEC51143.1| hypothetical protein PNA2_0225 [Pyrococcus sp. NA2]
          Length = 195

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 17/109 (15%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               +L+L CG G   +V +R  D V+  +I + +V  A+ N+  N+V N ++   +  E
Sbjct: 56  PNWRVLDLGCGYGPIGIVASRFVDYVIMTDINRRAVAIAKKNLKLNNVTNAEVRSGNLYE 115

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                             +   +F +I  +PP     D    +V   P+
Sbjct: 116 -----------------PVEGEKFDSIITNPPVHAGKDILREIVINAPN 147


>gi|170693978|ref|ZP_02885134.1| PUA domain containing protein [Burkholderia graminis C4D1M]
 gi|170141050|gb|EDT09222.1| PUA domain containing protein [Burkholderia graminis C4D1M]
          Length = 400

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L        D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  N  
Sbjct: 216 RLLVQQLAQDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGEALALAQQNVAANGFNAE 275

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F       +   RL D      RF  I +DPP+  
Sbjct: 276 RATWLDADAF-------KTLRRLYD---EGERFDLIVLDPPKFA 309


>gi|90581728|ref|ZP_01237515.1| putative HemK protein, Methylase of polypeptide chain release
           factors [Vibrio angustum S14]
 gi|90437082|gb|EAS62286.1| putative HemK protein, Methylase of polypeptide chain release
           factors [Vibrio angustum S14]
          Length = 284

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 84/239 (35%), Gaps = 42/239 (17%)

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
           L+     E+ +     P L + +     L     ++ +     + LDD        +   
Sbjct: 8   LLKQTTEELASAGSESPQLDSAVLLCHVL--DKPRSYLLTWPEKQLDDE----QYNIFQQ 61

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           L AR+   + I       I  +R++    L V+  TLI R                ++E 
Sbjct: 62  LLARRLNGEPIAY-----IVGEREFWSLPLKVSPSTLIPRPD-----------TERLVEL 105

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
            L         +L+L  G G  +L +A      +V  +++ + + E A  N     + N 
Sbjct: 106 ALDKITSATTKVLDLGTGTGAIALAIASECPSVQVTGIDLRQEAAELAHENSQRLSILNT 165

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           + +  S             ++ L++ D+    F+ I  +PP   +D A   +VQ     
Sbjct: 166 RFLAGS------------WYSPLQNNDV----FELIVSNPPY--IDHADPHLVQGDVRF 206


>gi|313497100|gb|ADR58466.1| HemK family modification methylase [Pseudomonas putida BIRD-1]
          Length = 276

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 19/114 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   +V AV+  + +   A  N  
Sbjct: 94  TELLVETALELQPASPAKVLDLGTGTGAIALALASERPAWQVTAVDRVEEAAALAERNRQ 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              + N ++            R    F+ L        RF  I  +PP    +D
Sbjct: 154 RLGLANARV------------RLSHWFDSL-----AGERFDLIVSNPPYIAAED 190


>gi|253576493|ref|ZP_04853822.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844130|gb|EES72149.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 287

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 21/148 (14%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNG 221
           + +R T++   L +     +F           +   M++ +  A + IQ  +L L+   G
Sbjct: 70  IPDRWTISYDRLKFYIRPTNFKHTGLFPEQAANWRWMMDKIAGAGRPIQ--VLNLFAYTG 127

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRREREF 279
             ++ +A     V+ V+ AK  V+ A+ N+A + +   +V+ +     +F Q  +R    
Sbjct: 128 GATVAVASAGASVVHVDAAKGMVQWAKENLALSGLADRHVRFITDDVFKFVQREQR---- 183

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                      R+  I +DPP  G    
Sbjct: 184 --------RGNRYDAIIMDPPSYGRGPG 203


>gi|148546008|ref|YP_001266110.1| HemK family modification methylase [Pseudomonas putida F1]
 gi|148510066|gb|ABQ76926.1| modification methylase, HemK family [Pseudomonas putida F1]
          Length = 276

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 19/114 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   +V AV+  + +   A  N  
Sbjct: 94  TELLVETALELQPASPAKVLDLGTGTGAIALALASERPAWQVTAVDRVEEAAALAERNRQ 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              + N ++            R    F+ L        RF  I  +PP    +D
Sbjct: 154 RLGLANARV------------RLSHWFDSL-----AGERFDLIVSNPPYIAAED 190


>gi|114798268|ref|YP_759648.1| hypothetical protein HNE_0921 [Hyphomonas neptunium ATCC 15444]
 gi|114738442|gb|ABI76567.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 282

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 185 NSFT---QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             FT   Q        +++ +          +L+L CG+G  +L  AR    VL V+IA 
Sbjct: 23  GDFTRIAQTMRASGEALVQSL---GIQKGHKVLDLGCGDGTTALPAARLGAEVLGVDIAS 79

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             V A     A   +   +  +  +   +
Sbjct: 80  NLVAAGNRRAAEEGLKTCRFQQGDASHLS 108


>gi|172062037|ref|YP_001809689.1| PUA domain-containing protein [Burkholderia ambifaria MC40-6]
 gi|171994554|gb|ACB65473.1| PUA domain containing protein [Burkholderia ambifaria MC40-6]
          Length = 404

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  
Sbjct: 220 RALVAQYAAGRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAE 279

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 280 RATWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 329


>gi|225377978|ref|ZP_03755199.1| hypothetical protein ROSEINA2194_03638 [Roseburia inulinivorans DSM
           16841]
 gi|225210229|gb|EEG92583.1| hypothetical protein ROSEINA2194_03638 [Roseburia inulinivorans DSM
           16841]
          Length = 399

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G F+L         V  ++I++ +V  A  N   NH+ 
Sbjct: 211 YNRLAMQRICKGKKVLDCFTHMGTFALNAGIVGAADVTGLDISEYAVSQAEANARLNHLE 270

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP 316
           N           T   R+    + L  +     ++  + +DPP      +AT   ++ Y 
Sbjct: 271 N-----------TVHFRQANVLDELPKLAQAGEKYDVVILDPPAFTKSREATKNAIKGYR 319

Query: 317 HI 318
            I
Sbjct: 320 EI 321


>gi|161526252|ref|YP_001581264.1| PUA domain-containing protein [Burkholderia multivorans ATCC 17616]
 gi|189349034|ref|YP_001944662.1| putative SAM-dependent methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|160343681|gb|ABX16767.1| PUA domain containing protein [Burkholderia multivorans ATCC 17616]
 gi|189333056|dbj|BAG42126.1| putative SAM-dependent methyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 404

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW----VLAATKGIQG 211
            +T   L  D     L V    + Y         PN       ++      L A      
Sbjct: 176 EQTTGVLAGDAPPATLIVDENGVRYHVDV-----PNGHKTGFYVDQRDNRALVAQHAAGR 230

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  +   + +  F 
Sbjct: 231 DVLNCFCYTGGFSLAALKGGATRVVSIDSSGDALALAQQNVVANGFDPARATWLDADAF- 289

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
                 +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 290 ------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 329


>gi|302525631|ref|ZP_07277973.1| predicted protein [Streptomyces sp. AA4]
 gi|302434526|gb|EFL06342.1| predicted protein [Streptomyces sp. AA4]
          Length = 234

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L A  G  G++L++ CG G  ++ LA    RV  ++ A  ++  AR   A   ++ V  
Sbjct: 35  ALEADGGFHGEVLDIGCGLGENAMYLASRGHRVTGLDGAPTALARARETAAKRGLD-VTF 93

Query: 262 VRMSSKEF 269
            +  +   
Sbjct: 94  AQADATRL 101


>gi|320103066|ref|YP_004178657.1| PUA domain-containing protein [Isosphaera pallida ATCC 43644]
 gi|319750348|gb|ADV62108.1| PUA domain containing protein [Isosphaera pallida ATCC 43644]
          Length = 422

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 18/133 (13%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHV 256
           L  + AA       +L+LYC  G FSLV  +H   V  L  + +  +VE AR +   NH+
Sbjct: 237 LNRLAAARYARGRCVLDLYCHVGGFSLVALKHGGAVSSLGFDSSSVAVEFARRHAVINHL 296

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAY 315
              +       +             LK +      F  + VDPP+           V+AY
Sbjct: 297 PTARFEVAHVPDA------------LKMLKATGRTFGMVVVDPPKFARSTKGVEEAVKAY 344

Query: 316 PHILYISCNPDSL 328
             +   +C+  SL
Sbjct: 345 VRL---NCDAVSL 354


>gi|300690279|ref|YP_003751274.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Ralstonia solanacearum PSI07]
 gi|299077339|emb|CBJ49964.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Ralstonia solanacearum PSI07]
          Length = 295

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNF--SLVLARHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L         D+L+L  G+G    ++ LAR   RV A + +  ++  A  N 
Sbjct: 103 TELLVEQALDRIDDRDAPDVLDLGTGSGIIAVTIALARRDARVWATDTSADALTVAVRNA 162

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A    NV +                 +  L + D     F  I  +PP
Sbjct: 163 QALGAANVHVALGD------------WYAALPENDAPP-VFDLIASNPP 198


>gi|284992527|ref|YP_003411081.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geodermatophilus obscurus DSM 43160]
 gi|284065772|gb|ADB76710.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geodermatophilus obscurus DSM 43160]
          Length = 286

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARH-- 230
             R+L        F          ++EW LA   G+ +  +++L  G+G  +L +A    
Sbjct: 76  PFRSLELAVGPGVF--VPRPETEQLVEWALARLAGLAEPVVVDLGSGSGAIALSIAHEHP 133

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT-QAMRREREFNRLKDIDIHS 289
             RV AVE    ++E  R+N A+        V + S + T   + RE +      +    
Sbjct: 134 GARVTAVERDPGAIEWTRHNAASRAAAGDTPVDVLSGDMTDPGLLRELDGTVDLVVSNPP 193

Query: 290 YRFKTIFVDPPRSGLDD 306
           Y      V  PR   D 
Sbjct: 194 YVPDGATV--PREVADH 208


>gi|257388001|ref|YP_003177774.1| methyltransferase [Halomicrobium mukohataei DSM 12286]
 gi|257170308|gb|ACV48067.1| methyltransferase [Halomicrobium mukohataei DSM 12286]
          Length = 333

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 15/117 (12%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVR 263
              G     L+++ G G F +  A+     + V++   ++E  R N   N   + V  + 
Sbjct: 177 EQVGADERALDMFAGVGPFVVPFAQRGATAVGVDVNPTAIEYLRENARRNGVADRVTAIE 236

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
              +                  D   +  + +   P  +         + A   +L+
Sbjct: 237 GDVRAVAP--------------DYEDWADRLVMNLPHSADEFLDAAETIAANDCVLH 279


>gi|323524460|ref|YP_004226613.1| PUA domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323381462|gb|ADX53553.1| PUA domain containing protein [Burkholderia sp. CCGE1001]
          Length = 400

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L        ++L  +C  G FSL  L     RV++V+ +  ++  A+ N+AAN  +  
Sbjct: 216 RLLVQQFARDREVLNCFCYTGGFSLAALKGGAKRVVSVDSSGEALALAQQNVAANGFDAG 275

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F + +RR  E            RF  I +DPP+  
Sbjct: 276 RATWLDADAF-KTLRRLYE---------EGERFDLIVLDPPKFA 309


>gi|307131077|ref|YP_003883093.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Dickeya dadantii 3937]
 gi|306528606|gb|ADM98536.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Dickeya dadantii 3937]
          Length = 283

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L +A  R   +V+ ++    +V  A +N +   
Sbjct: 98  LVEHALAHLPAGASSVLDLGTGTGAIALAIAHERPDCQVVGIDRQPDAVALASHNASQLG 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + N + +                        +   RF  I  +PP
Sbjct: 158 IANARFLPGD-----------------WFSPLDGQRFSLIVSNPP 185


>gi|221201911|ref|ZP_03574948.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221207583|ref|ZP_03580591.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221172429|gb|EEE04868.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221178331|gb|EEE10741.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 426

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  
Sbjct: 242 RALVAQHAAGRDVLNCFCYTGGFSLAALKGGATRVVSIDSSGDALALAQQNVVANGFDPA 301

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 302 RATWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 351


>gi|14590157|ref|NP_142222.1| hypothetical protein PH0226 [Pyrococcus horikoshii OT3]
 gi|3256615|dbj|BAA29298.1| 227aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 227

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LE +L      +G +L+L CG G FS +L  +   V+ V+I++  +  AR    +   +N
Sbjct: 28  LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-SN 86

Query: 259 VKIVRMSSKEFT 270
           V+ +   +++ +
Sbjct: 87  VEFIVGDARKLS 98


>gi|254251133|ref|ZP_04944451.1| hypothetical protein BDAG_00308 [Burkholderia dolosa AUO158]
 gi|124893742|gb|EAY67622.1| hypothetical protein BDAG_00308 [Burkholderia dolosa AUO158]
          Length = 404

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A      D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  
Sbjct: 220 RALVAQYAAGRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAE 279

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   + +  F       +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 280 RATWLDADAF-------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 329


>gi|254479719|ref|ZP_05093009.1| Met-10+ like-protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034348|gb|EEB75132.1| Met-10+ like-protein [Carboxydibrachium pacificum DSM 12653]
          Length = 393

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 31/152 (20%)

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            ++L+ +   G+F++  L     RV  V+I++ ++E A+ N+  N      + +R ++ +
Sbjct: 220 AEVLDCFSHTGSFAVHALHYGAKRVEIVDISEEALEMAKKNVELNGYQQRAEFIRENAFD 279

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYISCNPDS 327
             +   RE++            +F T+ +DPP      +     ++ Y  I     N   
Sbjct: 280 LLRRYDREKK------------KFDTVILDPPAFTKSKETVKDALRGYKEI-----N--- 319

Query: 328 LCRDLSILSTTHTI------ERLALFDQFPYT 353
             R L I+     +      + +   D F  T
Sbjct: 320 -LRALKIIREGGFLITCSCSQHIRP-DMFLNT 349


>gi|20807963|ref|NP_623134.1| SAM-dependent methyltransferase [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516535|gb|AAM24738.1| predicted SAM-dependent methyltransferases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 391

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 61/152 (40%), Gaps = 31/152 (20%)

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            ++L+ +   G+F++  L     RV  V+I++ ++E A+ N+  N      + +R ++ +
Sbjct: 218 AEVLDCFSHTGSFAVHALHYGAKRVEIVDISEEALEMAKKNVELNGYQQRAEFIRENAFD 277

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHILYISCNPDS 327
             +   RE++            +F T+ +DPP      +     ++ Y  I     N   
Sbjct: 278 LLRRYDREKK------------KFDTVILDPPAFTKSKETVKDALRGYKEI-----N--- 317

Query: 328 LCRDLSILSTTHTI------ERLALFDQFPYT 353
             R L I+     +      + +   D F  T
Sbjct: 318 -LRALKIIREGGFLITCSCSQHIRP-DMFLNT 347


>gi|160938430|ref|ZP_02085785.1| hypothetical protein CLOBOL_03328 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438803|gb|EDP16560.1| hypothetical protein CLOBOL_03328 [Clostridium bolteae ATCC
           BAA-613]
          Length = 410

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 72/204 (35%), Gaps = 30/204 (14%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI-- 183
            L     E  I +R        +++L     + K  +  D  D ++ +    + Y     
Sbjct: 148 KLRKVMAEDGITIRGVYERSDAKVRLQEGMERHKGFMG-DAFDTKVEILENGVRYMVDVE 206

Query: 184 ---ENSFT--QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLA 236
              +  F   Q     N   ++ +    +  Q  +L+ +   G+F+L   LA     VL 
Sbjct: 207 DGQKTGFFLDQ---KYNRLAVQNLCRRIQPKQ--VLDCFTHTGSFALNAGLAGSA-HVLG 260

Query: 237 VEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           V+ ++ +V  AR N A N +   V+       +    + +E              ++  +
Sbjct: 261 VDASELAVNQARENAALNGLTEQVQFECADVFDLLPRLEQE------------GRKYDVV 308

Query: 296 FVDPPRSGLDDATVG-MVQAYPHI 318
            +DPP       ++   V+ Y  I
Sbjct: 309 ILDPPAFTKSRNSIKNAVKGYREI 332


>gi|282162875|ref|YP_003355260.1| hypothetical protein MCP_0205 [Methanocella paludicola SANAE]
 gi|282155189|dbj|BAI60277.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 289

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 21/227 (9%)

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSD 115
                 MF++Q    + +      +LL + L  E +A +     +  ++  I        
Sbjct: 2   GKNNSKMFNKQ--RGIPVPADPLATLLKDRLTPEELAVLPRGWQIIGEVLLIHIPPVLQT 59

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +  +       L    R      R A   R+   + I   + T+     +YV  +L VA 
Sbjct: 60  KKALIAEALLTLYPRCRTVMETHRIAGEYRQPVFERIS-GDGTETLHKENYVVYKLDVA- 117

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
                + +   F+Q N        E     T G    +++++ G G FSL +A H    +
Sbjct: 118 -----KIM---FSQGN------FYERRRMGTVGKGERVVDMFAGIGYFSLPMAVHARPGK 163

Query: 234 VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF 279
           +LA+E+   S      N+  NHV + V+ V    +E       +R  
Sbjct: 164 ILAIELNPESYGYLCENVRLNHVEDIVEPVLGDCREKAPEGWADRAI 210


>gi|237808749|ref|YP_002893189.1| PUA domain containing protein [Tolumonas auensis DSM 9187]
 gi|259491982|sp|C4L7I7|RLMI_TOLAT RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|237501010|gb|ACQ93603.1| PUA domain containing protein [Tolumonas auensis DSM 9187]
          Length = 397

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +A        +L  +C  G F +  L      V+ V++++ ++E A++N   N ++  
Sbjct: 213 RAIAGRYAKDRRVLNCFCYTGGFGVYALQGGAKEVINVDVSESALELAKHNATLNKLDLT 272

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
           K  R   ++  + +R  RE            +F  I +DPP+   + A  +G  + Y  I
Sbjct: 273 K-ARFEKQDVFKLLREYRE---------RGEKFDMIVLDPPKFAENKAQLIGACRGYKDI 322


>gi|55379501|ref|YP_137351.1| methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55232226|gb|AAV47645.1| putative methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 378

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIV 262
            A +     +L+++ G G F+L +AR    V AVE    S      N+  N V+  V+  
Sbjct: 220 EAAREGGERVLDMFAGIGYFTLPMARAGAHVTAVERNPTSFRFLVENVMLNDVDERVQPY 279

Query: 263 RMSSKEFTQAMRREREFNR 281
           R   ++       E   +R
Sbjct: 280 RADCRDVVPGFASEGRADR 298


>gi|221215808|ref|ZP_03588767.1| PUA domain containing protein [Burkholderia multivorans CGD1]
 gi|221164344|gb|EED96831.1| PUA domain containing protein [Burkholderia multivorans CGD1]
          Length = 426

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW----VLAATKGIQG 211
            +T   L  D     L V    + Y         PN       ++      L A      
Sbjct: 198 EQTTGVLAGDAPPATLIVDENGVRYHVDV-----PNGHKTGFYVDQRDNRALVAQHAAGR 252

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D+L  +C  G FSL  L     RV++++ +  ++  A+ N+ AN  +  +   + +  F 
Sbjct: 253 DVLNCFCYTGGFSLAALKGGATRVVSIDSSGDALALAQQNVVANGFDPARATWLDADAF- 311

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
                 +   RL D      RF  I +DPP+     D+     +AY  I
Sbjct: 312 ------KTLRRLVD---EGERFDLIVLDPPKFAPTRDSVDRAARAYKDI 351


>gi|86158798|ref|YP_465583.1| SAM-dependent methyltransferase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775309|gb|ABC82146.1| SAM-dependent methyltransferase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 400

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 19/136 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAA 253
           N  M+  +       + + L L+   G FS+  A      V+ V++ + ++  AR N  A
Sbjct: 213 NRRMVRDLAR----GRAEALNLFGYTGGFSVAAALGGAGHVVTVDVDRDAIALARENFRA 268

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++              A   E  F  L        RF  +  DPP        V    
Sbjct: 269 NGLDAAD----------HAFAAEDCFELLARYKREGRRFDLVVCDPPAFAKSQKAVEGAL 318

Query: 314 AYPHILYISCNPDSLC 329
           A     Y S N  +L 
Sbjct: 319 AG----YASLNRAALA 330


>gi|313127040|ref|YP_004037310.1| methyltransferase [Halogeometricum borinquense DSM 11551]
 gi|312293405|gb|ADQ67865.1| methyltransferase [Halogeometricum borinquense DSM 11551]
          Length = 342

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFT 270
            + +++ G G F + +A+    V+  ++   +VE  R N   N V   V   +   ++  
Sbjct: 192 RVFDMFAGVGPFVIPMAKRGAEVVGCDLNAAAVEYLRENARRNGVEERVTARQGDVRDVA 251

Query: 271 QAMRRE 276
                 
Sbjct: 252 DDYEGW 257


>gi|299132437|ref|ZP_07025632.1| Methyltransferase type 11 [Afipia sp. 1NLS2]
 gi|298592574|gb|EFI52774.1| Methyltransferase type 11 [Afipia sp. 1NLS2]
          Length = 158

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+L CG+G  +L  A+    VL V+IAK  VEA       + + N K     +    +
Sbjct: 38  KVLDLGCGDGTMALPEAKLGADVLGVDIAKNLVEAGNKRAQEHGLTNCKFQEGDASNLHE 97


>gi|297618925|ref|YP_003707030.1| methyltransferase small [Methanococcus voltae A3]
 gi|297377902|gb|ADI36057.1| methyltransferase small [Methanococcus voltae A3]
          Length = 214

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 18/106 (16%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSK 267
           + D+L++ CG G   + LA   + V+  +I K SV  A+ NI  NHV   N+KI + +  
Sbjct: 56  EDDILDMGCGYGAIGISLADDVNSVIMTDINKRSVSLAKQNIKLNHVKNKNIKIFQGN-- 113

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                         L +      +F TI  +PP          ++ 
Sbjct: 114 --------------LYEEVPKDAKFDTIISNPPIKAGKAIIHKIIS 145


>gi|195160853|ref|XP_002021288.1| GL24890 [Drosophila persimilis]
 gi|194118401|gb|EDW40444.1| GL24890 [Drosophila persimilis]
          Length = 440

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 91/245 (37%), Gaps = 28/245 (11%)

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY-LTSQSDQAIVTLIYHRL 126
           K+++  D F    L +N              +L++ L + +  +TS S    +  +  R 
Sbjct: 88  KQQVTQDNFSFVELELN------YENWSANEILKSVLPEEEDGMTSYSRIGHIVHLNLRD 141

Query: 127 LDDAWRECAIR-LRDALHARKYQIQLIGRANKT-------KICLDRDYVDERLTVAGRTL 178
               +++     LRD L   +  +      + T        IC + +Y  E        +
Sbjct: 142 HLLPYKQLIGEVLRDKLPNCRTVVNKASSIDNTYRNFQLELICGEAEYQVET---KENGI 198

Query: 179 IYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235
            +   E  F++   N  ++    E          GD+L +++ G G FS+  A+    VL
Sbjct: 199 PF---EFDFSKVYWNPRLST---EHERIVKLLQPGDVLYDVFAGVGPFSVPAAKKRCHVL 252

Query: 236 AVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           A ++   S    ++N   N  ++N+K+     +EF     R     RL+  D  SY    
Sbjct: 253 ANDLNPVSFHWLQHNAKRNKCLSNIKMSNKDGREFILKELRADLLQRLRLTDTSSYATHI 312

Query: 295 IFVDP 299
               P
Sbjct: 313 TMNLP 317


>gi|256004989|ref|ZP_05429961.1| conserved hypothetical protein [Clostridium thermocellum DSM 2360]
 gi|281416998|ref|ZP_06248018.1| conserved hypothetical protein [Clostridium thermocellum JW20]
 gi|255991058|gb|EEU01168.1| conserved hypothetical protein [Clostridium thermocellum DSM 2360]
 gi|281408400|gb|EFB38658.1| conserved hypothetical protein [Clostridium thermocellum JW20]
 gi|316940964|gb|ADU74998.1| hypothetical protein Clo1313_1951 [Clostridium thermocellum DSM
           1313]
          Length = 291

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 21/147 (14%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNG 221
           + ER T++   L +      F          V+   M++ + +A++ I  ++L L+   G
Sbjct: 71  LPERWTISYHDLSFYIEPTGFKHTGLFPEQAVNWKWMIDKIRSASRNI--NVLNLFAYTG 128

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREF 279
             ++  A     V  V+ AK  V+ A+ N+A + + +  V+ +     +F Q  +R    
Sbjct: 129 GATVACAYANASVCHVDAAKGMVQRAKENLALSGLADRSVRFIVDDVIKFVQREKR---- 184

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                      ++  + +DPP  G   
Sbjct: 185 --------RGRQYDAVIMDPPSYGRGP 203


>gi|72162084|ref|YP_289741.1| 16S rRNA m(2)G 1207 methyltransferase [Thermobifida fusca YX]
 gi|71915816|gb|AAZ55718.1| 16S rRNA m(2)G 1207 methyltransferase [Thermobifida fusca YX]
          Length = 205

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 17/120 (14%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +LE V        G LL+L CG G  +L +A       V+ ++  + ++  AR N  AN 
Sbjct: 49  LLETV--PPPPDHGTLLDLGCGYGPIALAMALRAPKATVVGIDTNQRALALARRNAEANA 106

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           V NV   R                       +    F  ++ +PP      A   ++  +
Sbjct: 107 VPNVSFHRA-------------PGPEDPVDPLLRGPFAALWSNPPIRIGKQALHTLLTTW 153


>gi|291230494|ref|XP_002735219.1| PREDICTED: tRNA methyltransferase 5-like [Saccoglossus kowalevskii]
          Length = 445

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 111/284 (39%), Gaps = 36/284 (12%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLI---NALMIEMMA-------- 92
           R R    I  D  +  +  +    ++   ++ F   +  I   N++  ++          
Sbjct: 51  RKRCHIKIMRDVPNEENKFWLLDPEKVTDMNSFSEETRQILKDNSVEEKLYEYDLEIRYK 110

Query: 93  TIRLEPLLRAKLFQ-IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
               + +LR+ +   I+ ++S S    +    H  L D   +    +   +  +   +++
Sbjct: 111 EWSADEILRSVMPHDIEVISSFSRLGHIA---HMNLRDEQMQYKKIIGQVILDKNPGLKM 167

Query: 152 IGRANKTKICLDRDY---------VDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLE 200
           +     T   +D ++          +E   V      +   E  F++   N+ ++    E
Sbjct: 168 VVNKVNT---IDNEFRFFQMELMAGEETSMVTSTKENHCTFEFDFSKVYWNSRLST---E 221

Query: 201 WVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
                +   +GD++ +++ G G F++  A+   +VLA ++   S +  + N+  N VNN 
Sbjct: 222 HDRIVSMLQKGDVIYDVFAGVGPFAVPAAKKGCKVLANDLNPESFKWLQRNVKLNKVNNR 281

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT--IFVDPP 300
           V+   +  +EF + + ++     +K+    +    T  I ++ P
Sbjct: 282 VQCFNLDGREFIKVVFKDNYLKHIKEKSKEANDDATYHIIMNLP 325


>gi|220916689|ref|YP_002491993.1| PUA domain containing protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954543|gb|ACL64927.1| PUA domain containing protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 400

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 19/136 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAA 253
           N  M+  +       + + L L+   G FS+  A      V+ V++ + ++  AR N  A
Sbjct: 213 NRRMVRDLAR----GRAEALNLFGYTGGFSVAAALGGAGHVVTVDVDRDAIALARENFRA 268

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++              A   E  F  L        RF  +  DPP        V    
Sbjct: 269 NGLDAAD----------HAFAAEDCFELLARYKREGRRFDLVVCDPPAFAKSQKAVEGAL 318

Query: 314 AYPHILYISCNPDSLC 329
           A     Y S N  +L 
Sbjct: 319 AG----YASLNRAALA 330


>gi|319940773|ref|ZP_08015113.1| PUA domain-containing protein [Sutterella wadsworthensis 3_1_45B]
 gi|319805793|gb|EFW02569.1| PUA domain-containing protein [Sutterella wadsworthensis 3_1_45B]
          Length = 401

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 13/118 (11%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                G     L  +C  G FSL L +   + V++V+ ++ ++  AR N   N   N   
Sbjct: 219 FRRRHGRGLRALNCFCYTGGFSLALLKGGAEEVVSVDSSEEALAMARANAERNGFTNR-- 276

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                         E  F  L+ +     +F  + +DPP+            +AY  I
Sbjct: 277 ---------AEWLCEDVFTCLRRLRDAGEKFDLVILDPPKFASSHYHVDRAARAYKDI 325


>gi|222823086|ref|YP_002574659.1| hypothetical protein Cla_0040 [Campylobacter lari RM2100]
 gi|222538307|gb|ACM63408.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 232

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++ CG+G ++L LA+    VL V+ +   +E  + +   + ++N+K + +  + F + 
Sbjct: 37  VVDIGCGSGVWTLHLAQKAKDVLGVDSSSAMLEILQDDAKTHAISNIKTINLDFENFYKN 96

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
            + + +                     P    +   +  +   P  +Y+
Sbjct: 97  NKEKFDL--------------AFLSMSPALQNEQDFLAFLNLAPKRIYL 131


>gi|226362772|ref|YP_002780550.1| hypothetical protein ROP_33580 [Rhodococcus opacus B4]
 gi|226241257|dbj|BAH51605.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 219

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA+     G +L+  CG G+ +L +A    RVL V++A+ +V  AR    A  ++  + V
Sbjct: 52  LASNGRFAGAVLDAGCGTGDNALHVASLGSRVLGVDVAETAVAIAREKAGARGID-AEFV 110

Query: 263 RMSSKEF 269
              + E 
Sbjct: 111 VGDAFEL 117


>gi|217970324|ref|YP_002355558.1| PUA domain containing protein [Thauera sp. MZ1T]
 gi|217507651|gb|ACK54662.1| PUA domain containing protein [Thauera sp. MZ1T]
          Length = 396

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 10/104 (9%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L         +L  +C  G FSL  LA     VL+++ + P++ +AR N+A N   + 
Sbjct: 211 RLLTGQLAGGRTVLNCFCYTGGFSLQALAGGAASVLSIDSSGPALASARRNLALNPQLDA 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +       +  +A+R  ++  R         +F  I +DPP+  
Sbjct: 271 ERAEWLEADVFKALRALKDEGR---------KFDLIVLDPPKFA 305


>gi|116670026|ref|YP_830959.1| methyltransferase small [Arthrobacter sp. FB24]
 gi|116610135|gb|ABK02859.1| 16S rRNA m(2)G 1207 methyltransferase [Arthrobacter sp. FB24]
          Length = 204

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              QG+LL++ CG G  +L +A       V AV++ +  V     N     +NNV     
Sbjct: 57  PSPQGNLLDIGCGWGPIALTMALRAPHSHVYAVDVNERCVALTNENAGLLGLNNVTA--- 113

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
                            L D      RF TI+ +PP R G D+    ++   P + 
Sbjct: 114 ----------------SLPDDVDPGLRFDTIWSNPPIRIGKDELHSMLLLWLPRLA 153


>gi|293334143|ref|NP_001169015.1| hypothetical protein LOC100382848 [Zea mays]
 gi|223974453|gb|ACN31414.1| unknown [Zea mays]
          Length = 322

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 210 QGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSS 266
              +L+L C +G F+L  A+   D V+ ++ +  +++ A  NI  N +N   V  V+  +
Sbjct: 146 DQRVLDLCCYSGGFALNAAKGGADNVIGIDSSGSALDLANENIVLNELNQGKVSFVKGDA 205

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             F +    E E             +  + +DPP+       +      
Sbjct: 206 TTFMKGAISENEL------------WDLVILDPPKLAPRKKVLQSASGM 242


>gi|26987470|ref|NP_742895.1| methyl transferase [Pseudomonas putida KT2440]
 gi|24982134|gb|AAN66359.1|AE016264_3 methyl transferase [Pseudomonas putida KT2440]
          Length = 276

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 19/114 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   +V AV+  + +   A  N  
Sbjct: 94  TELLVETALELQPASPAKVLDLGTGTGAIALALASERPAWQVTAVDRVEEAAALAERNRQ 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              + N ++            R    F+ L      + RF  I  +PP    +D
Sbjct: 154 RLGLANARV------------RLSHWFDSL-----AAERFDLIVSNPPYIAAED 190


>gi|184158673|ref|YP_001847012.1| methylase of polypeptide chain release factor [Acinetobacter
           baumannii ACICU]
 gi|332874368|ref|ZP_08442279.1| protein-(glutamine-N5) methyltransferase [Acinetobacter baumannii
           6014059]
 gi|183210267|gb|ACC57665.1| Methylase of polypeptide chain release factor [Acinetobacter
           baumannii ACICU]
 gi|322507516|gb|ADX02970.1| Methyl transferase [Acinetobacter baumannii 1656-2]
 gi|323518588|gb|ADX92969.1| methylase of polypeptide chain release factor [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332737447|gb|EGJ68363.1| protein-(glutamine-N5) methyltransferase [Acinetobacter baumannii
           6014059]
          Length = 271

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 66/178 (37%), Gaps = 19/178 (10%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L  ++ Q  L G            +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTVQQEQDYLAGLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSV 244
                      ++E VL        ++++L  G G  +L LA  R    V A +I  P++
Sbjct: 92  --------TEVLVETVLNLNLPKNANIVDLGTGTGAIALALASERPDWFVTATDIYAPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           + A+ N   + +++VK    +  E  +  + +   +    ID      + +  +P R+
Sbjct: 144 DVAKENAQTHGLHHVKFACGAWFEALEPQQFDLIVSNPPYIDPEDEHMQALATEPRRA 201


>gi|293567648|ref|ZP_06678991.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1071]
 gi|291589583|gb|EFF21388.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1071]
          Length = 279

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLI 179
           L +   +++   E   RL       +  ++L+   +  +  L   D+ D RL V   TLI
Sbjct: 40  LDWLLHMNEEISEEEQRL------IETDLRLLLADHPPQYLLGYADFYDHRLKVTEATLI 93

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAV 237
            R                ++EW L  T G+  +++++  G G  ++ L  AR    V AV
Sbjct: 94  PRPE-----------TEELVEWCLDETPGVPLEVIDIGTGTGAIAISLKAARKNWHVSAV 142

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           ++++ ++E A+ N        +      +                    +   +F  I  
Sbjct: 143 DLSEEALEVAKENAQKEGTK-ISFYHGDTL-----------------GPVMDQQFDVIIS 184

Query: 298 DPP 300
           +PP
Sbjct: 185 NPP 187


>gi|269126609|ref|YP_003299979.1| methyltransferase small [Thermomonospora curvata DSM 43183]
 gi|268311567|gb|ACY97941.1| methyltransferase small [Thermomonospora curvata DSM 43183]
          Length = 228

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 23/120 (19%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +LE V A     +GDLL++ CG G  +L +A      RV  V++ + +++ AR N     
Sbjct: 66  LLETVPA--PPAEGDLLDVGCGYGPIALAMALRSPRARVYGVDVNERALQLARLNARTAG 123

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N    R                    +    + RF  ++ +PP      A   ++  +
Sbjct: 124 IGNASFHR-------------------PEQIDPAMRFAALWSNPPIRIGKAALHELLTTW 164


>gi|302672210|ref|YP_003832170.1| hypothetical protein bpr_I2858 [Butyrivibrio proteoclasticus B316]
 gi|302396683|gb|ADL35588.1| hypothetical protein bpr_I2858 [Butyrivibrio proteoclasticus B316]
          Length = 431

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+ +   G+F+L   A     VL V+ +      A  N A N +           E 
Sbjct: 255 KKVLDCFTHTGSFALNAAAGGASSVLGVDASDLGCRQAEENAALNGL-----------EK 303

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             + +    F  L D++    +F  + +DPP      A++    
Sbjct: 304 IASFQCADVFELLPDLEKKGEKFDVVILDPPAFTKSRASIKKAA 347


>gi|296161399|ref|ZP_06844206.1| Protein of unknown function methylase putative [Burkholderia sp.
           Ch1-1]
 gi|295888385|gb|EFG68196.1| Protein of unknown function methylase putative [Burkholderia sp.
           Ch1-1]
          Length = 400

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L        D+L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 216 RLLVQQLAQDRDVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALAIAQQNVAANGFDAE 275

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F       +   RL D      RF  + +DPP+  
Sbjct: 276 RATWLDADAF-------KTLRRLYD---DGERFDLVVLDPPKFA 309


>gi|257052094|ref|YP_003129927.1| methyltransferase [Halorhabdus utahensis DSM 12940]
 gi|256690857|gb|ACV11194.1| methyltransferase [Halorhabdus utahensis DSM 12940]
          Length = 365

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
           G    +L+++ G G F+L +AR    V+AVE    + +    N   N V + V+  R   
Sbjct: 215 GDDETVLDMFAGIGYFTLPMARADADVIAVERNPTAFQYLLENARLNDVTDRVQPYRADC 274

Query: 267 KEFTQAMRRER 277
           ++    +  +R
Sbjct: 275 RDVVDGVSVDR 285


>gi|217927670|gb|ACK57236.1| CG32281-like protein [Drosophila affinis]
          Length = 359

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 20/221 (9%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
                   +L++ L + +   +   +  +  I H  L D        + + L  +    +
Sbjct: 109 YENWSANEILKSVLPEDEEGMTSYSR--IGHIVHLNLRDHLLPYKQLIGEVLRDKLPNCR 166

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQ--------IENSFTQP--NAGINVHMLE 200
            +     T   +D  Y + +L +      Y+          E  F++   N  ++    E
Sbjct: 167 TVVNKAST---IDNTYRNFQLELICGEAEYQVETKENGIPFEFDFSKVYWNPRLST---E 220

Query: 201 WVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
                     GD+L +++ G G FS+  A+    VLA ++   S    ++N   N  ++N
Sbjct: 221 HERIVKLLQPGDVLYDVFAGVGPFSVPAAKKRCHVLANDLNPVSFHWLQHNAKRNKCLSN 280

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K+     ++F     R     RLK  D  SY        P
Sbjct: 281 IKMFNKDGRQFILEELRVDLLQRLKSTDTSSYATHITMNLP 321


>gi|291522115|emb|CBK80408.1| SAM-dependent methyltransferase [Coprococcus catus GD/7]
          Length = 400

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV- 256
              +          +L+ +   G+F+L         V  V+ ++ +V  A  N A N + 
Sbjct: 212 YNRLAIQKLCRGARVLDCFTHTGSFALNAGIAGAAEVTGVDASELAVHQAEENAALNQLQ 271

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAY 315
           + V                   FN L +++    ++  + +DPP       +    ++ Y
Sbjct: 272 DTVHFQCADV------------FNLLPELEKQGEKYDVVILDPPAFTKSRNSVKHAMKGY 319

Query: 316 PHI 318
             I
Sbjct: 320 REI 322


>gi|254454411|ref|ZP_05067848.1| protein-L-isoaspartate O-methyltransferase [Octadecabacter
           antarcticus 238]
 gi|198268817|gb|EDY93087.1| protein-L-isoaspartate O-methyltransferase [Octadecabacter
           antarcticus 238]
          Length = 207

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 19/126 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             MLE        +   +L+L CG G  + VLA+  D V+AVE      + A+ N++ + 
Sbjct: 58  AKMLEAADVQPSDV---VLDLGCGLGYSTAVLAQLADFVVAVEDEPGRAQEAQQNLSDHG 114

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           V+N  +   +                L D    +  +  I +      +    +  ++  
Sbjct: 115 VDNAAVFEGA----------------LADGAAKNGPYDVIMLQGAVEQIPANLLAQIKDG 158

Query: 316 PHILYI 321
             I+ I
Sbjct: 159 GRIVAI 164


>gi|158339356|ref|YP_001520533.1| methyltransferase [Acaryochloris marina MBIC11017]
 gi|158309597|gb|ABW31214.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
          Length = 241

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAAN 254
           ML+            +L+L  G G  ++  A+   R   V+ V+IA   +E AR   AA 
Sbjct: 1   MLDHA---FLSQGQRVLDLATGTGLVAIDAAQRVGRTGSVIGVDIATDMIECARQKAAAL 57

Query: 255 HVNNVKIVRMSSKEF 269
            + NV  +   +++ 
Sbjct: 58  GLTNVDFLVADAEDL 72


>gi|326484777|gb|EGE08787.1| Crg1p [Trichophyton equinum CBS 127.97]
          Length = 294

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           T A     Y     SF          + + + A  +G     L+L CG+G  +  LA  F
Sbjct: 3   TFASNNFSYTAYA-SFR---PEYPQRLYDMICAYHRGGYDTCLDLGCGHGLVARFLAPKF 58

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +V  V+ +   +E A  N+      NV+ V+ +++  
Sbjct: 59  KKVYGVDPSAGMIEQA-KNLTKEQ--NVEFVQAAAESL 93


>gi|90412791|ref|ZP_01220791.1| putative HemK protein, Methylase of polypeptide chain release
           factors [Photobacterium profundum 3TCK]
 gi|90326150|gb|EAS42577.1| putative HemK protein, Methylase of polypeptide chain release
           factors [Photobacterium profundum 3TCK]
          Length = 282

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 18/130 (13%)

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           L +AL AR+   + +       I  +R++    L V+  TLI R                
Sbjct: 58  LFEALLARRITGEPVAY-----ILGEREFWSLPLKVSPFTLIPRPD-----------TER 101

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L +A  R+  +V  +++   + E A  N    +
Sbjct: 102 LVEVALEKIPTQACTVLDLGTGTGAIALAIASERNDAQVTGIDLRPEAAELAAENGQRLN 161

Query: 256 VNNVKIVRMS 265
           + N + +  S
Sbjct: 162 IQNARFLAGS 171


>gi|282163595|ref|YP_003355980.1| 1-methylguanosine tRNA methyltransferase [Methanocella paludicola
           SANAE]
 gi|282155909|dbj|BAI60997.1| 1-methylguanosine tRNA methyltransferase [Methanocella paludicola
           SANAE]
          Length = 331

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 36/71 (50%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+++ G G F++ +++     +AV+    +VE  + NIA N  + ++ V M +++    
Sbjct: 182 VLDMFAGVGPFAIPISKRAMYTIAVDKNPDAVEYLKKNIALNKASRIEAVNMDARDIQTP 241

Query: 273 MRREREFNRLK 283
              +R    L 
Sbjct: 242 QPPDRIIMNLP 252


>gi|253579565|ref|ZP_04856834.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849066|gb|EES77027.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 400

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 15/123 (12%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV- 256
              +          +L+ +   G+F+L       + V  V+ ++ +V+ A  N A N + 
Sbjct: 212 YNRLAIQKLCKGAKVLDCFTHTGSFALNAGIAGAESVTGVDASQLAVDQATANAALNGLS 271

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAY 315
           ++VK +     E             L +++    +F  + +DPP       ++   V+ Y
Sbjct: 272 DSVKFICEDVFEL------------LPELEEKGEKFDVVILDPPAFTKSRNSIKNAVKGY 319

Query: 316 PHI 318
             I
Sbjct: 320 REI 322


>gi|15827566|ref|NP_301829.1| protoporphyrinogen oxidase [Mycobacterium leprae TN]
 gi|221230043|ref|YP_002503459.1| putative protoporphyrinogen oxidase [Mycobacterium leprae Br4923]
 gi|13432147|sp|P45832|HEMK_MYCLE RecName: Full=Protein methyltransferase hemK homolog; AltName:
           Full=M.MleHemKP
 gi|13093116|emb|CAC31516.1| possible protoporphyrinogen oxidase [Mycobacterium leprae]
 gi|219933150|emb|CAR71230.1| possible protoporphyrinogen oxidase [Mycobacterium leprae Br4923]
          Length = 288

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 35/190 (18%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
           LLD    E   R  DA+ AR  ++ L       +  +         TV+   ++     +
Sbjct: 45  LLDTPGEEFFRRYSDAVAARSRRVPL-------QHLIG--------TVSFGPVVLHVGPD 89

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPS 243
            F  P       +L WV+A     +  +++   G+G  ++ LA H    RV+ ++ +  +
Sbjct: 90  VFI-PRPE-TEAILAWVMAQRLPERPVIVDACTGSGALAVALAHHRPAARVIGIDDSDSA 147

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++ AR N        V+ VR      T A+        L ++D           +PP   
Sbjct: 148 LDYARRNAEG---TAVECVRADVT--TPAL--------LPELD---GCVDLFVANPPYVP 191

Query: 304 LDDATVGMVQ 313
            D     +++
Sbjct: 192 DDPVVQSILE 201


>gi|260063120|ref|YP_003196200.1| putative protoporphyrinogen oxidase [Robiginitalea biformata
           HTCC2501]
 gi|88784689|gb|EAR15859.1| putative protoporphyrinogen oxidase [Robiginitalea biformata
           HTCC2501]
          Length = 304

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 195 NVHMLEWVLAATKG--IQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYN 250
              ++ WVL        +G++L++  G+G  +L LA+     RV A++I+  ++E AR N
Sbjct: 98  TEELVRWVLERHAADLREGNILDIGTGSGCIALGLAKSLPAARVTALDISGEALEVAREN 157

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                ++    VR+   +         E     + +   Y    I  +PP
Sbjct: 158 ARHLGLD----VRLVRADIRNPEGEWPESILNPEGEWPGY--DLIISNPP 201


>gi|297625830|ref|YP_003687593.1| methyltransferase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921595|emb|CBL56149.1| methyltransferase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 209

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 20/146 (13%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           T+ G    +R     F+Q    +   +L   L          L+L CG G  ++ LA   
Sbjct: 30  TIWGHDYEFRSSNGVFSQYRLDLGTSVLLRTLDPPVDRPARFLDLGCGFGPIAVALATEC 89

Query: 232 --DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              RV A+++ + +VE    N  A  V     V  S+                 D     
Sbjct: 90  PRARVDAIDVNERAVELTAMNAKALGV--ASQVSASA----------------PDQVPAD 131

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAY 315
            R+  I+ +PP      A   ++  +
Sbjct: 132 VRYDEIWSNPPIRIGKPALHELLDTW 157


>gi|195491306|ref|XP_002093506.1| GE21330 [Drosophila yakuba]
 gi|194179607|gb|EDW93218.1| GE21330 [Drosophila yakuba]
          Length = 457

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 20/221 (9%)

Query: 91  MATIRLEPLLRAKLF-QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR-LRDALHARKYQ 148
                   +L++ L  + + LTS S    +  +  R     +++   + LRD L   +  
Sbjct: 128 YENWSANEILKSVLPTEEEGLTSYSRIGHIAHLNLRDHLLPYKQLIGQVLRDKLPNCRTV 187

Query: 149 IQLIGRANKT-------KICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHML 199
           +      + T        IC D +Y  E        + +   E  F++   N  ++    
Sbjct: 188 VNKASTIDNTYRNFQLELICGDAEYQVET---KENGVPF---EFDFSKVYWNPRLSTEH- 240

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
           E ++   K +   L +++ G G FS+  A+    VLA ++   S +  ++N   N  V N
Sbjct: 241 ERIVKMLKSVD-VLYDVFAGVGPFSVPAAKKRCHVLANDLNPESFKWLQHNAKRNKCVPN 299

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +++     ++F     RE    RL+  D  +Y        P
Sbjct: 300 IQMFNKDGRQFIVEELREDLLKRLRTTDTTTYAIHITMNLP 340


>gi|95930410|ref|ZP_01313146.1| methyltransferase small [Desulfuromonas acetoxidans DSM 684]
 gi|95133450|gb|EAT15113.1| methyltransferase small [Desulfuromonas acetoxidans DSM 684]
          Length = 402

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 26/150 (17%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQI--ENSFTQPNAGI---NVHMLEWVLAATKGIQGDLLE 215
            L    V +R TV    L YR    E      N G+          +    +G    +L 
Sbjct: 179 LLAGSAVPDRYTVEENHLTYRVSLEEG----LNTGLFMDQRANRRDLAERCQG--KRVLN 232

Query: 216 LYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQA 272
           L+C  G FS+  A     RV +V+ +   ++ AR N   N +N      +          
Sbjct: 233 LFCYTGAFSVAAAASGATRVTSVDASPHYLDQARENFGLNRINAKRHAFICGDC------ 286

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                 F+ L D+     RF  + +DPP  
Sbjct: 287 ------FDVLPDLLAQGERFDIVIMDPPSF 310


>gi|313202187|ref|YP_004040845.1| HemK family modification methylase [Methylovorus sp. MP688]
 gi|312441503|gb|ADQ85609.1| modification methylase, HemK family [Methylovorus sp. MP688]
          Length = 297

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 19/155 (12%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYC 218
           I  +R++   RL V+  TLI R                ++E  LA     +   +L+L  
Sbjct: 78  ILGNREFFGLRLAVSPATLIPRPD-----------TETLVEAALAHIPSEETRQVLDLGT 126

Query: 219 GNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           G G  +L +A H    RV+AV+ +  +++ AR+N  A  +   +     + +     R  
Sbjct: 127 GTGAIALAIAAHRPQSRVIAVDASAAALQVARHNAEALGLATPEAGDQDTTKGNVEFRLG 186

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             F  L        +F  I  +PP    DD  +  
Sbjct: 187 SWFTPL-----AGLKFDVIVSNPPYIRKDDPHLQQ 216


>gi|171687583|ref|XP_001908732.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943753|emb|CAP69405.1| unnamed protein product [Podospora anserina S mat+]
          Length = 344

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 9/148 (6%)

Query: 208 GIQGDLLELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRM 264
             +  +++L+ G G    +  L+  ++ V+++E    ++  A++N     V+  +  +  
Sbjct: 166 PRRTTIVDLFGGAGGNTIAFALSEKWEHVISIERDASTLACAQHNAEVYGVSGYITFIHG 225

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD---DATVGMVQAYP---HI 318
              +F   ++   E   L   +        +F  PP  G+D        +    P    +
Sbjct: 226 DCLDFLDRLKYHPETLDLSLREKCDMSQTVLFASPPWGGVDYKEQDVFDLSTMEPYNLEV 285

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLAL 346
           L+ SC+P      L   S    I +LA 
Sbjct: 286 LHKSCSPMEHALYLPRTSDLRQIAKLAP 313


>gi|126642198|ref|YP_001085182.1| methyl transferase [Acinetobacter baumannii ATCC 17978]
          Length = 206

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 2/110 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E VL        ++++L  G G  +L LA  R    V A +I  P+++ A+ N  
Sbjct: 25  TEVLIETVLNLNLPKNANIVDLGTGTGAIALALASERPNWFVTATDIYAPTLDVAKENAQ 84

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            + +++VK    +  E  +  + +   +    ID      + +  +P R+
Sbjct: 85  THGLHHVKFACGAWFEALEPQQFDLIVSNPPYIDPEDEHMQALATEPRRA 134


>gi|260549388|ref|ZP_05823607.1| protein-(glutamine-N5) methyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260407497|gb|EEX00971.1| protein-(glutamine-N5) methyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 271

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 19/178 (10%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L A++ Q  L G            +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTAQQEQDYLAGLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSV 244
                      ++E VL      + ++++L  G G  +L LA  R    V A +I  P++
Sbjct: 92  --------TEVLVETVLNLNLPNKANIVDLGTGTGAIALALASERPDWFVTATDIYAPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
             A+ N   + + +VK    +  E  +  + +   +    ID      + +  +P R+
Sbjct: 144 NIAKENAQTHGLYHVKFACGAWFEALEPQQFDLIVSNPPYIDPEDEHMQALATEPRRA 201


>gi|261403419|ref|YP_003247643.1| methylase [Methanocaldococcus vulcanius M7]
 gi|261370412|gb|ACX73161.1| methylase [Methanocaldococcus vulcanius M7]
          Length = 198

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 31/133 (23%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           E + +   + +Y   E++F          +L+ ++        ++LE+  G G  S+  A
Sbjct: 6   EGIKIKLHSEVYEPAEDTFL---------LLKNIVDVEN---KEVLEIGVGTGIISIACA 53

Query: 229 RH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           +    +V+ V+I   +V  A  N   N+VNNV  ++    E  +                
Sbjct: 54  KRGAKKVVGVDINPFAVNLALENAKLNNVNNVSFIKSDLFENVRG--------------- 98

Query: 288 HSYRFKTIFVDPP 300
               F  I  +PP
Sbjct: 99  ---EFDVILFNPP 108


>gi|220935907|ref|YP_002514806.1| putative RNA methylase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997217|gb|ACL73819.1| putative RNA methylase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 426

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 85/253 (33%), Gaps = 42/253 (16%)

Query: 79  GSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHRLLDDAWR 132
            SLL++ L + +     +  EP  R    + D L      +    +V  +    ++    
Sbjct: 83  ASLLVHRLKVALSLRERLFTEPCYRLAYGESDGLPGLVVDRYGDVLVAQVTTAGMEVMQD 142

Query: 133 ECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDYVDERLTVAGRTLIYRQIEN 185
                L  A+H +    +      +        +  L    V E +T+      +     
Sbjct: 143 AILEALHKAVHPKAVLWRNDSPVRELEGLDLYMRPALGE--VPETVTLTEHGARFHAPLL 200

Query: 186 S------FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVE 238
           S      F             W+   ++G++  +L+L+   G + +  A    + V  V+
Sbjct: 201 SGQKTGWFF-----DQRDNRAWLARVSRGMK--VLDLFSYVGAWGVQAALNGAESVTCVD 253

Query: 239 IAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
            +  ++E+   N A N V + V  V+  + E  + +R ++             RF  +  
Sbjct: 254 ASGDALESMAANAAENGVGDRVSGVKGDAFEVLKQLREDQ------------ARFDVVIT 301

Query: 298 DPPRSGLDDATVG 310
           DPP        V 
Sbjct: 302 DPPAFIKRRKDVK 314


>gi|195587377|ref|XP_002083441.1| GD13733 [Drosophila simulans]
 gi|194195450|gb|EDX09026.1| GD13733 [Drosophila simulans]
          Length = 457

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 28/245 (11%)

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF-QIDYLTSQSDQAIVTLIYHRL 126
           ++++  + F    L +               +L++ L  + + LTS S    +  +  R 
Sbjct: 111 RQKVNAENFSFADLELR------YENWSANEILKSVLPTEEEGLTSYSRIGHIAHLNLRD 164

Query: 127 LDDAWRECAIR-LRDALHARKYQIQLIGRANKT-------KICLDRDYVDERLTVAGRTL 178
               +++   + LRD L   +  +      + T        IC D +Y  E        +
Sbjct: 165 HLLPYKQLIGQVLRDKLPNCRTVVNKASSIDNTYRNFQLELICGDPNYQVET---KENGV 221

Query: 179 IYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235
            +   E  F++   N  ++    E           D+L +++ G G FS+  A+    VL
Sbjct: 222 PF---EFDFSKVYWNPRLST---EHERIVKMLKSDDVLYDVFAGVGPFSVPAAKKRCHVL 275

Query: 236 AVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           A ++   S    ++N   N  + N+K+     ++F     RE    RL   D  +Y    
Sbjct: 276 ANDLNPESFRWLQHNAKRNKCMPNIKMSNKDGRQFIVEELREDLLKRLCTTDTTTYAIHI 335

Query: 295 IFVDP 299
               P
Sbjct: 336 TMNLP 340


>gi|110800285|ref|YP_697236.1| putative methyltransferase [Clostridium perfringens ATCC 13124]
 gi|110674932|gb|ABG83919.1| putative methyltransferase [Clostridium perfringens ATCC 13124]
          Length = 391

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                      D+L+ +   G+F+L         VL +++++ +V+ A  N   N++ + 
Sbjct: 208 RAAMHRICKGMDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAVDCATRNAELNNLQDR 267

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                          +   F+ L D      +F  + +DPP            ++ Y  I
Sbjct: 268 -----------VKFEKHNAFDVLGDWSREGKQFGVVILDPPAFTKSRNTVKQAIRGYKEI 316


>gi|325068459|ref|ZP_08127132.1| hypothetical protein AoriK_11587 [Actinomyces oris K20]
          Length = 152

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 18/120 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +L+ V        G  L+L CG G  +L LA      RVLA ++ + S+     N  
Sbjct: 48  TQVLLDHV--PDPAQTGTFLDLGCGWGPITLALAGAAPQARVLATDVNERSLALTARNAT 105

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           A  ++NV+     +               L ++   S     I+ +PP     +A   ++
Sbjct: 106 AAGLDNVRTAPADA--------------LLAELRQSSTPVDLIWSNPPVRIGKEALHTLL 151


>gi|312143008|ref|YP_003994454.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus']
 gi|311903659|gb|ADQ14100.1| Methyltransferase type 11 [Halanaerobium sp. 'sapolanicus']
          Length = 263

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 212 DLLELYCGNGNFSLVLARHF----DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G F   LA        +V+ +++ +  VE AR N   N V NV+ +    +
Sbjct: 83  TVLDLGSGAG-FDAFLASREVGEKGKVIGIDMTEEMVEKARENAQKNGVKNVEFILGEIE 141

Query: 268 EFTQA 272
           +   A
Sbjct: 142 DLPLA 146


>gi|89093754|ref|ZP_01166700.1| hypothetical protein MED92_04629 [Oceanospirillum sp. MED92]
 gi|89081884|gb|EAR61110.1| hypothetical protein MED92_04629 [Oceanospirillum sp. MED92]
          Length = 398

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 58/172 (33%), Gaps = 44/172 (25%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
                       +L+L+   G +    LA    + + V+ +  ++E A  N   N+  + 
Sbjct: 212 RAQMQKHVEGKRVLDLFSYVGGWGAQALAAGASQAICVDASHFALEVAAENARINNAEDR 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---------RSG------ 303
            +     + +  +++  ++E            +F  + +DPP         R+G      
Sbjct: 272 FEGFHGDAFDICKSLIADKE------------KFDVVVLDPPAFIQKKKDVRNGERAYSR 319

Query: 304 LDDATVGMVQAYPHILYISC---------------NPDSLCRDLSILSTTHT 340
           +++  + +++    ++  SC               N   L R+  I    H 
Sbjct: 320 MNNFAMRLLKKDGILVSASCSMHLQRERLVDIIRSNSRELDRNAQIFDQGHQ 371


>gi|288941779|ref|YP_003444019.1| hypothetical protein Alvin_2065 [Allochromatium vinosum DSM 180]
 gi|288897151|gb|ADC62987.1| protein of unknown function Met10 [Allochromatium vinosum DSM 180]
          Length = 398

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 65/233 (27%), Gaps = 36/233 (15%)

Query: 89  EMMATIRLEPLLRAKLFQIDYLTSQSDQ--------AIVTLIYHRLLDDAWRECAIRLRD 140
            +   +   P  R    + D L               I T    R   +        LR 
Sbjct: 92  ALRERLYTAPFYRLVFGESDGLPGLIVDRYGDRLAVQITTAGMERARAEILAALEQVLRP 151

Query: 141 A---LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS----FTQPNAG 193
               L       +L G     +  L     D  LT  G       +       F      
Sbjct: 152 QAIVLRNDTSVRELEGLEPGVEHVLGEPSGDWILTEQGLEFAIDPMRGQKTGWFF----D 207

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIA 252
              +       A  G+   +L++    G + L  A      V  V+ +  ++E  + N  
Sbjct: 208 QAEN---RARLARYGVGERVLDVCSYVGAWGLRAAALGASDVTCVDASADALERLQSNAE 264

Query: 253 ANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            N +   V+ ++  + E  + +R                RF T+ +DPP    
Sbjct: 265 RNGLSARVRPLQGDAFEVLRQLRD------------QGRRFDTVLLDPPAFIK 305


>gi|313897900|ref|ZP_07831441.1| putative 23S rRNA m5C1962 methyltransferase [Clostridium sp. HGF2]
 gi|312957435|gb|EFR39062.1| putative 23S rRNA m5C1962 methyltransferase [Clostridium sp. HGF2]
          Length = 410

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 15/123 (12%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV- 256
                 A       +L+ +   G+F+L  A+     V AV+I++ +++ A+++   N + 
Sbjct: 225 YNRAAIARIAKGKHVLDCFTHTGSFALNAAKGGAAHVHAVDISQTAIDMAQHHADINGLQ 284

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAY 315
             +        +  +A+++                +  I +DPP       T+   V+ Y
Sbjct: 285 ERMSFETADVFDLLKALKK------------QPRVYDMIILDPPAFTKSRETISHAVKGY 332

Query: 316 PHI 318
             I
Sbjct: 333 REI 335


>gi|146283508|ref|YP_001173661.1| methyl transferase [Pseudomonas stutzeri A1501]
 gi|145571713|gb|ABP80819.1| methyl transferase [Pseudomonas stutzeri A1501]
          Length = 275

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   +V  V+  + +V  A  N  
Sbjct: 94  TELLVETALQLLSAAPARVLDLGTGTGAIALALATERPAWQVCGVDRVEAAVRLAERNRL 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              ++N                            ++  RF+ I  +PP
Sbjct: 154 RLGLHNAAFTLSD-----------------WFAGLNGERFQMIVSNPP 184


>gi|182418531|ref|ZP_02949819.1| methyltransferase [Clostridium butyricum 5521]
 gi|237668015|ref|ZP_04527999.1| PUA domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377623|gb|EDT75171.1| methyltransferase [Clostridium butyricum 5521]
 gi|237656363|gb|EEP53919.1| putative RNA methylase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 391

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
                      D+L+ +   G+F+L         VL +++++ +V+ A  N   N++ + 
Sbjct: 208 RAAIHRICKGKDVLDCFTHTGSFALNAGIAGAKSVLGIDVSQHAVDCAIRNSELNNLQDI 267

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPH 317
           VK    ++            FN L +       F  + +DPP       T+   ++ Y  
Sbjct: 268 VKFECHNA------------FNVLGEWSRDGREFDVVILDPPAFTKSKNTINQAIRGYKE 315

Query: 318 I 318
           I
Sbjct: 316 I 316


>gi|238925418|ref|YP_002938935.1| putative methyltransferase [Eubacterium rectale ATCC 33656]
 gi|238877094|gb|ACR76801.1| putative methyltransferase [Eubacterium rectale ATCC 33656]
 gi|291527687|emb|CBK93273.1| SAM-dependent methyltransferase [Eubacterium rectale M104/1]
          Length = 435

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G F+L         V  ++I++ +V+ A  N   N+++
Sbjct: 243 YNRLAMQRICKGKRVLDCFTHMGTFALNAGIAGASEVTGLDISEYAVKQATENAKRNNLS 302

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP 316
           +           T   R     + L  +     ++  + +DPP      +AT   ++ Y 
Sbjct: 303 D-----------TVKFRVANVLDELPRLAADGEKYDVVILDPPAFTKSREATKNAIKGYR 351

Query: 317 HI 318
            I
Sbjct: 352 EI 353


>gi|149178312|ref|ZP_01856904.1| hypothetical protein PM8797T_01144 [Planctomyces maris DSM 8797]
 gi|148842838|gb|EDL57209.1| hypothetical protein PM8797T_01144 [Planctomyces maris DSM 8797]
          Length = 416

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 15/117 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL--VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            + AA        LEL+C  G F+L  ++      V++ + ++ +++ A  N   N + N
Sbjct: 232 RLAAARYLKNHRTLELHCYTGAFALNAIIHGQAQSVVSYDSSQSAIDQATANAELNGIGN 291

Query: 259 -VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            +      +    +  + E E            +F +I +DPP+     + V     
Sbjct: 292 RIHFQTGKAYAVLEQFKAEGE------------QFDSIILDPPKMARHRSGVKQALK 336


>gi|238919471|ref|YP_002932986.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Edwardsiella ictaluri 93-146]
 gi|238869040|gb|ACR68751.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Edwardsiella ictaluri 93-146]
          Length = 279

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +++L  G G  +L LA  R   +V AVE    +V  A++N A   
Sbjct: 98  LVEQALLRLPATPVQIVDLGTGTGAIALALASERPDCQVSAVEFNPDAVALAQHNAARLG 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++ V+I++ S                     +   RF  I  +PP
Sbjct: 158 LSRVEILQGS-----------------WFTPLAGRRFTLIVSNPP 185


>gi|294101117|ref|YP_003552975.1| methyltransferase small [Aminobacterium colombiense DSM 12261]
 gi|293616097|gb|ADE56251.1| methyltransferase small [Aminobacterium colombiense DSM 12261]
          Length = 402

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 210 QGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSS 266
           + D+L+ +C  G+F L  L      V AVE ++ ++   R N+  N +   +V +   ++
Sbjct: 225 EADVLDCFCFQGHFGLHALHWGARSVTAVEQSEEALAVYRENLQMNGLSSKDVDLRHGNA 284

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV---GMVQAYPHILYISC 323
            +  + +  E++   +  +D   +      ++  R G  +  +    +++    +LY+ C
Sbjct: 285 FDELRRLEGEKKLYDIIIMDPPPFSPGKAQIESARRGYKELALRAYRLLRPEGVLLYLCC 344


>gi|261879547|ref|ZP_06005974.1| ribosomal protein L11 methyltransferase [Prevotella bergensis DSM
           17361]
 gi|270333773|gb|EFA44559.1| ribosomal protein L11 methyltransferase [Prevotella bergensis DSM
           17361]
          Length = 288

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA 252
               M+   L         +L+  CG+G   +V ++     V+  +I + SV+ AR+N  
Sbjct: 134 QTTRMIISTLLNLPLQGKRVLDCGCGSGILGIVASKFGAKSVIGYDIDEWSVDNARHNAE 193

Query: 253 ANHVNNVKIVRMSS 266
            N V+N++++   +
Sbjct: 194 QNRVSNLEVIHGDA 207


>gi|193211933|ref|YP_001997886.1| Mg-protoporphyrin IX methyl transferase [Chlorobaculum parvum NCIB
           8327]
 gi|193085410|gb|ACF10686.1| magnesium protoporphyrin O-methyltransferase [Chlorobaculum parvum
           NCIB 8327]
          Length = 232

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 10/126 (7%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y D++L+    T+          Q +A +     EW+ +        +L+  CG G F++
Sbjct: 31  YGDDKLSTVRSTVR---------QGHAVMMDKAFEWLQSTGLPKGSKILDAGCGTGLFTI 81

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKD 284
            LA++  RV A +IA+  V   R +       +NV+    S +  +        F+ L  
Sbjct: 82  RLAKNGYRVKAADIAEQMVNKTREDAQKEGVADNVEFEVSSIESVSGTFDTVVCFDVLIH 141

Query: 285 IDIHSY 290
                +
Sbjct: 142 YPAEGF 147


>gi|21674770|ref|NP_662835.1| Mg-protoporphyrin IX methyl transferase [Chlorobium tepidum TLS]
 gi|21647984|gb|AAM73177.1| magnesium-protoporphyrin IX monomethyl ester oxidative cyclase, 25
           kDa subunit [Chlorobium tepidum TLS]
          Length = 232

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y D++L+    T+          Q +A +     EW+          +L+  CG G F++
Sbjct: 31  YGDDKLSTVRSTVR---------QGHAVMMDKAFEWLQKTGLPKGSKILDAGCGTGLFTI 81

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKD 284
            LA+   RV A +IA+  V   R +     V  NV+    S +  +        F+ L  
Sbjct: 82  RLAKSGYRVKAADIAEQMVNKTREDAEKAGVAGNVEFEVNSIESVSGTFDAVVCFDVLIH 141

Query: 285 IDIHSY 290
                +
Sbjct: 142 YPAEGF 147


>gi|153003070|ref|YP_001377395.1| type 12 methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152026643|gb|ABS24411.1| Methyltransferase type 12 [Anaeromyxobacter sp. Fw109-5]
          Length = 198

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA    ++G +L++ CG G  +L LA    RV+ V+ ++ ++  AR   A   +  V   
Sbjct: 32  LADEGEVKGTVLDVGCGTGENALHLASLGKRVVGVDGSRAAIARAREKAAERGLP-VAFH 90

Query: 263 RMSS 266
              +
Sbjct: 91  VADA 94


>gi|270261429|ref|ZP_06189702.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Serratia odorifera 4Rx13]
 gi|270044913|gb|EFA18004.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Serratia odorifera 4Rx13]
          Length = 277

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L LA  R    V  V++   +V  A++N     
Sbjct: 98  LVELALERLPPSPCTILDLGTGTGAIALALASERPDCAVTGVDLQPEAVALAQHNAQKLA 157

Query: 256 VNNVKIVRMS 265
           + N + ++ S
Sbjct: 158 IGNAQFLQGS 167


>gi|261403589|ref|YP_003247813.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus vulcanius M7]
 gi|261370582|gb|ACX73331.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus vulcanius M7]
          Length = 180

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 38/67 (56%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++ CG+G  ++ +A+    V A++    ++E  + N+A  ++ N +I++  +++    
Sbjct: 36  VVDIGCGSGGMTVEIAKRCKFVYAIDYLDDAIELTQQNLAKFNIKNCQIIKGRAEDVLDK 95

Query: 273 MRREREF 279
           ++  + F
Sbjct: 96  LKFNKAF 102


>gi|307103939|gb|EFN52196.1| hypothetical protein CHLNCDRAFT_37067 [Chlorella variabilis]
          Length = 411

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 10/111 (9%)

Query: 166 YVDERLTVAGRTLIYRQIE---NSFTQPNAGINVHMLEWVLAATKGIQGD-----LLELY 217
           Y  E + +   +   RQ      +F Q        ML W   A   + GD     +L++ 
Sbjct: 135 YWGEHIHLGHYSEEERQRGYKKKNFIQAKYDFVEEMLRWSGWACADVSGDGGVPKILDVG 194

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           CG G  S  LA  F    V  + ++   V+      A   ++N K   M +
Sbjct: 195 CGIGGTSRYLAAKFPQASVTGITLSPSQVQRGTELAAERGLSNAKFQVMDA 245


>gi|255078480|ref|XP_002502820.1| predicted protein [Micromonas sp. RCC299]
 gi|226518086|gb|ACO64078.1| predicted protein [Micromonas sp. RCC299]
          Length = 569

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 317 HILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
            ++Y+SC   +  RD   L  S    +     F+ FP + H+E   +  R+ +G
Sbjct: 510 RLIYLSCGFAAFQRDCDALVKSGEWRLTHAEGFNFFPGSDHVETLAVFDREETG 563



 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 88/343 (25%), Gaps = 54/343 (15%)

Query: 20  RLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWH-------DGDDLYHIMFDQQTKERMR 72
           R R+               +   +R RA              G+ L   +F + + + + 
Sbjct: 93  RAREYFARSHDAAFDCATGDVRGWRTRARLAARMVPDEDAAGGEKLALGLFARGSHDLVE 152

Query: 73  IDYFMPGSLLIN-----------ALMIEMMATIRLEPLLRAKLFQIDYLTSQSD------ 115
           I   +     +N              I        E  LR           ++D      
Sbjct: 153 IPGCVVQHPRLNDAAALIASACERAGIRAYDETTGEGELRYVQLTAVGADGRADLDTDAA 212

Query: 116 --QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ-------IQLIGRANKTKICLD--- 163
              A+V                  +  AL             I+         + +D   
Sbjct: 213 VQVALVWNSPAPTTAAGPMTAPRAIALALKLWNSNSADGPGDIEPPNGVRVHSVWIDWND 272

Query: 164 --RDYVDERLTVAGRTLIY----------RQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
              + +        +   +               SF Q N+      LE + +       
Sbjct: 273 APGNKITGPHWTHLKGERFVWARHGAADVCFTPGSFVQANSRAFDAALERIRSFVF-RGA 331

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + ELY G G   L +A         E +   VE           +  K+     +  + 
Sbjct: 332 AVSELYAGAGPIGLSIAATMGEDGDDEGSVRCVEIVGAAAETFERSKSKLPEGVGRRVSM 391

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           A+ R  +  R    D        + VDPPR GLD  T+  +  
Sbjct: 392 AISRAEDACRDAVRDA-----DVVIVDPPRMGLDPRTLTALTG 429


>gi|170594083|ref|XP_001901793.1| Met-10+ like-protein [Brugia malayi]
 gi|158590737|gb|EDP29352.1| Met-10+ like-protein [Brugia malayi]
          Length = 456

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 67/172 (38%), Gaps = 18/172 (10%)

Query: 118 IVTLIYHRLLDDAWR----ECAIRLRDALHARKYQIQLIGRANK-----TKICLDRDYVD 168
           ++ L ++      WR    +    + + L+ R+   + +   ++       +   +D   
Sbjct: 59  MIILPHNCFKHPNWRLMGPKLWEMVTELLNTRRLGKKRVIEGDEFHEPHIDLLYGKDGWV 118

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-- 226
           E +    R  +Y      F   N       +    +     Q  + +++ G G ++L   
Sbjct: 119 EHIDGDIR-FLYDVT-KCFFNVNNASEKQRI----SEFDCHQEVVTDMFAGIGYYTLPYL 172

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRRER 277
           ++ H   V A++  + ++EA + ++  N V +   +++  S++ T     +R
Sbjct: 173 ISAHAKHVYAIDWNEDAIEALKRSLQINCVQDRCTVIQGDSRKVTPQGVADR 224


>gi|152012722|gb|AAI50348.1| LOC564078 protein [Danio rerio]
          Length = 481

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 82/218 (37%), Gaps = 18/218 (8%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
               + E +LRA L +   +TS    + V  I H  L +        +   +  +   I 
Sbjct: 162 YENFKSEEILRAVLPEGQDVTS--GFSRVGHIAHMNLREHQLPYRKLIGQVIIDKNPGIT 219

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS------FTQP--NAGINVHMLEWV 202
            +     T     R++  E L      ++ +  EN       F++   N  ++    E +
Sbjct: 220 CVVNKTNTIDSTYRNFQMEVL-AGESNMVAKVRENGVLYEFDFSRVYWNPRLSTEH-ERI 277

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           ++        +++++ G G F++  AR    VLA ++   S    ++N   N V+  +  
Sbjct: 278 VSLLH-RDDTVVDVFAGVGPFAIPAARRGCAVLANDLNPESFRWLQHNAKLNKVDQKITT 336

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             +  ++F +   RE    RL  +   S +   +   P
Sbjct: 337 SNLDGRDFIRGPVRE----RLPALMKGSQKIHVVMNLP 370


>gi|145299047|ref|YP_001141888.1| SAM-dependent methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|224493199|sp|A4SML8|RLMI_AERS4 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|142851819|gb|ABO90140.1| SAM-dependent methyltransferase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 396

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 16/113 (14%)

Query: 210 QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSS 266
              +L  +   G F +  L      V+ V++++ +++ AR N   N ++  N + +R   
Sbjct: 221 AKRVLNCFSYTGGFGIYALKGGAKEVVNVDLSQTALDMARQNAELNGLDISNTQFIRHDV 280

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
                       F  L++      +F  I +DPP+     A  +G  + Y  I
Sbjct: 281 ------------FKLLREYREKGEKFDVIVLDPPKFAESKAQLLGACRGYKDI 321


>gi|323691690|ref|ZP_08105951.1| hydrogenase-4 [Clostridium symbiosum WAL-14673]
 gi|323504234|gb|EGB20035.1| hydrogenase-4 [Clostridium symbiosum WAL-14673]
          Length = 402

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G+F+L  A      VL V+ ++  +  AR N   N V+
Sbjct: 213 YNRLAIQKLCKGKRVLDCFTHTGSFALNAAVSGASEVLGVDASELGITQARQNAELNGVS 272

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP 316
                       T +      F  L  ++ +  +F  + +DPP       +    V+ Y 
Sbjct: 273 G-----------TTSFLCADVFELLPSLEHNGEKFDVVILDPPAFTKSRNSVKNAVKGYR 321

Query: 317 HI 318
            I
Sbjct: 322 EI 323


>gi|323485614|ref|ZP_08090955.1| hypothetical protein HMPREF9474_02706 [Clostridium symbiosum
           WAL-14163]
 gi|323401084|gb|EGA93441.1| hypothetical protein HMPREF9474_02706 [Clostridium symbiosum
           WAL-14163]
          Length = 402

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G+F+L  A      VL V+ ++  +  AR N   N V+
Sbjct: 213 YNRLAIQKLCKGKRVLDCFTHTGSFALNAAVSGASEVLGVDASELGITQARQNAELNGVS 272

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP 316
                       T +      F  L  ++ +  +F  + +DPP       +    V+ Y 
Sbjct: 273 G-----------TTSFLCADVFELLPSLEHNGEKFDVVILDPPAFTKSRNSVKNAVKGYR 321

Query: 317 HI 318
            I
Sbjct: 322 EI 323


>gi|228989310|ref|ZP_04149301.1| hypothetical protein bpmyx0001_870 [Bacillus pseudomycoides DSM
           12442]
 gi|228770388|gb|EEM18961.1| hypothetical protein bpmyx0001_870 [Bacillus pseudomycoides DSM
           12442]
          Length = 213

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 23/121 (19%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N V NV+I 
Sbjct: 68  QMPDIKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALGLAKENAANNKVENVRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHILYI 321
           + S  E                      ++  I  +PP R+G     V  +     I  +
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKH--IVHEILEKAAIHLV 167

Query: 322 S 322
           S
Sbjct: 168 S 168


>gi|195337055|ref|XP_002035148.1| GM14540 [Drosophila sechellia]
 gi|194128241|gb|EDW50284.1| GM14540 [Drosophila sechellia]
          Length = 457

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 28/245 (11%)

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF-QIDYLTSQSDQAIVTLIYHRL 126
           ++++  + F    L +               +L++ L  + + LTS S    +  +  R 
Sbjct: 111 RQKVNAENFSFADLELR------YENWSANEILKSVLPTEEEGLTSYSRIGHIAHLNLRD 164

Query: 127 LDDAWRECAIR-LRDALHARKYQIQLIGRANKT-------KICLDRDYVDERLTVAGRTL 178
               +++   + LRD L   +  +      + T        IC D +Y  E        +
Sbjct: 165 HLLPYKQLIGQVLRDKLPNCRTVVNKASSIDNTYRNFQLELICGDPNYQVET---KENGV 221

Query: 179 IYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235
            +   E  F++   N  ++    E           D+L +++ G G FS+  A+    VL
Sbjct: 222 PF---EFDFSKVYWNPRLST---EHERIVKMLKSDDVLYDVFAGVGPFSVPAAKKRCHVL 275

Query: 236 AVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           A ++   S    ++N   N  + N+K+     ++F     RE    RL   D  +Y    
Sbjct: 276 ANDLNPESFRWLQHNAKRNKCMPNIKMSNKDGRQFIVEELREDLIKRLCTTDTTTYAIHI 335

Query: 295 IFVDP 299
               P
Sbjct: 336 TMNLP 340


>gi|149182225|ref|ZP_01860706.1| putative methyltransferase [Bacillus sp. SG-1]
 gi|148850084|gb|EDL64253.1| putative methyltransferase [Bacillus sp. SG-1]
          Length = 260

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E +     G  G++L+L CG G   + LA +FD+   ++I    +E AR       + NV
Sbjct: 29  EIITEYQTGGSGNMLDLGCGTGEVIVPLAGYFDKAYGIDINAEMLEKARERAEEAGLTNV 88

Query: 260 KIVRMSSK 267
              + S++
Sbjct: 89  VWKQASAE 96


>gi|325281900|ref|YP_004254442.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Odoribacter splanchnicus DSM 20712]
 gi|324313709|gb|ADY34262.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Odoribacter splanchnicus DSM 20712]
          Length = 290

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIA 252
              ++ WV          LL++  G+G   + LAR      V  V+I+  ++E AR N  
Sbjct: 99  TEELVRWV-GEWLKPGNRLLDVGSGSGCIGISLARLCQGAHVTGVDISPEAIELARENAI 157

Query: 253 ANHVN 257
            N V 
Sbjct: 158 LNGVK 162


>gi|222099858|ref|YP_002534426.1| SAM-dependent methyltransferase [Thermotoga neapolitana DSM 4359]
 gi|221572248|gb|ACM23060.1| SAM-dependent methyltransferase [Thermotoga neapolitana DSM 4359]
          Length = 389

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 18/120 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
           N  M+              L+++   GNF+  L +     V  V+ ++ S+E AR  +  
Sbjct: 203 NAKMV-----LDFAKDKVCLDVFSYTGNFAAHLLKGSARHVTLVDYSERSLEIAREILKM 257

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N   N   +  ++            F+ LKD D    ++  + +DPP       ++   +
Sbjct: 258 NGFENFDTITGNA------------FDILKDFDKSGKKYDLVVLDPPSFAKSSRSLESAK 305


>gi|304392321|ref|ZP_07374262.1| SAM dependent methyltransferase [Ahrensia sp. R2A130]
 gi|303295425|gb|EFL89784.1| SAM dependent methyltransferase [Ahrensia sp. R2A130]
          Length = 393

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 30/212 (14%)

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           KL +    T +  +     + HR   + W                         +     
Sbjct: 106 KLERYGTTTIRRPEGQAMWLPHRPASE-WDGADATFTGDTDEEGPGRWKFSDPAR----- 159

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELY 217
                +ER  +    L Y     SF          VH   M++ +  A K     +L L+
Sbjct: 160 -----EERFPLEVDGLPYWGRFTSFRHTGIFPEQVVHWRSMVKAIEQAPKDRPVSVLNLF 214

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV--KIVRMSSKEFTQAMRR 275
              G  SL+ AR    V  V+ +K ++  AR N     + +   + +   + +F Q   R
Sbjct: 215 GYTGLASLMAARAGAHVTHVDASKKAIGWARENAELAGLADAPIRWICDDAMKFCQRDVR 274

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             +             +  I +DPP  G    
Sbjct: 275 REQ------------TYDIILLDPPAYGRGPK 294


>gi|229424411|gb|ACQ63619.1| SAM-dependent methyltransferase [Streptomyces sp. MK730-62F2]
          Length = 210

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 1/127 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                     +        G LL++ CG G +SL++A     V  V+ ++  VE AR   
Sbjct: 25  PEQAAAWGALLAEVYPVHTGRLLDIGCGTGTYSLLIAELGFDVHGVDTSERMVERARAKA 84

Query: 252 AANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                   V    + +++ +         N L  +       +T+      S +  A   
Sbjct: 85  LERGAGPGVSFSTLPAQDISGQYDAVFSRNVLWTVADPGRLAETVREHTTESAVWIAVET 144

Query: 311 MVQAYPH 317
           M   +P 
Sbjct: 145 MWDGHPR 151


>gi|289580575|ref|YP_003479041.1| hypothetical protein Nmag_0895 [Natrialba magadii ATCC 43099]
 gi|289530128|gb|ADD04479.1| protein of unknown function Met10 [Natrialba magadii ATCC 43099]
          Length = 366

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVR 263
                   + +++ G G F +  A      + V++   ++E  R N   N   + V  + 
Sbjct: 210 EQAAPDEQVFDMFAGVGPFVIPFANRGAECVGVDVNPDAIEYLRENARRNGVADRVTAIC 269

Query: 264 MSSKEFT 270
              ++ +
Sbjct: 270 DDVRDVS 276


>gi|207721784|ref|YP_002252222.1| methylase of polypeptide chain release factors protein [Ralstonia
           solanacearum MolK2]
 gi|206586948|emb|CAQ17532.1| methylase of polypeptide chain release factors protein [Ralstonia
           solanacearum MolK2]
          Length = 245

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 26/152 (17%)

Query: 173 VAGRTLIYRQIENSFT----QPNAGI------NVHMLEWVLAATKGIQ-GDLLELYCGNG 221
           +AG  + Y   E  F     Q    +         ++E  L   +     D+L+L  G+G
Sbjct: 71  LAGEPMAYLLGEREFFGRLFQVTPAVLIPRPDTELLVEQALDRIEDRDAPDVLDLGTGSG 130

Query: 222 NF--SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
               ++ LAR   RV A + +  ++  A  N       NV +                 +
Sbjct: 131 IIAVTVALARRDARVWATDASADALAVAAGNAQTLGAANVHVALGD------------WY 178

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             L + D     F  I  +PP     DA +  
Sbjct: 179 GALPESDAPPA-FDLIVSNPPYIASADAHLDQ 209


>gi|52549299|gb|AAU83148.1| predicted methyltransferase [uncultured archaeon GZfos26G2]
          Length = 367

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 13/203 (6%)

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +E + +  F+     I+     +   +   P     +  I  LT   D   +T    + +
Sbjct: 55  REEVGVTEFLTADFAISEPRRSIEDILGFSPAYE-IIGDIAVLTGAGDS--ITETNEQRV 111

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS- 186
                     ++  +  R   ++ + R  K KI    +   E +        Y+      
Sbjct: 112 AHTILNLHKNIK-VVAKRISPVEGVFRNRKLKILAGENR-TETIH-KENGCRYKLDPEKV 168

Query: 187 -FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPS 243
            F   N  +        +   +     +++++ G G+FS+ +A+   +  V A++I   +
Sbjct: 169 YF---NPSLAGERNRVAMQVERSKNELIIDMFAGVGSFSIQIAKRAPQSIVTAIDINPDA 225

Query: 244 VEAARYNIAANHVNNVKIVRMSS 266
           +     N+  N V N++ +    
Sbjct: 226 IRYLHENMEQNGVRNIEPIEGDV 248


>gi|89895874|ref|YP_519361.1| ribosomal protein L11 methylase [Desulfitobacterium hafniense Y51]
 gi|122481887|sp|Q24SS5|PRMA_DESHY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|89335322|dbj|BAE84917.1| ribosomal protein L11 methylase [Desulfitobacterium hafniense Y51]
          Length = 312

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 72/226 (31%), Gaps = 17/226 (7%)

Query: 79  GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH------RLLDDAWR 132
           G   ++    E++ +           F    LT  S         H      R LD+  +
Sbjct: 26  GCPGVSVEDPELLQSYVESGNWDYHDFGEIALTGTSVVKGYICEDHELQPKLRQLDEGLK 85

Query: 133 ECAIRLRD-ALHARKYQIQLIGRANK-----TKICLDRDYVD----ERLTVAGRTLIYRQ 182
           E   R  +  L  +   +Q    A         + + R ++     E +T     +I   
Sbjct: 86  ELLQRFPEWVLQVKGLTVQEEDWATSWKAYFKPVRIGRHFLIKPSWEEVTPLPEDIILEL 145

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
                          +    L  T      + +L  G+G  ++  A+   +V A+++   
Sbjct: 146 DPGMAFGTGTHATTSLCLETLEETVKPDMRIFDLGTGSGILAIAAAKLGAQVEAIDLDSV 205

Query: 243 SVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           +V+ A+ N+  N   + + + +       Q        N + D+ +
Sbjct: 206 AVKVAQENVELNQVADRISVRQGDLGTVLQGQADLVVANIIADVIL 251


>gi|219670303|ref|YP_002460738.1| ribosomal protein L11 methyltransferase [Desulfitobacterium
           hafniense DCB-2]
 gi|254783300|sp|B8FUN2|PRMA_DESHD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|219540563|gb|ACL22302.1| ribosomal protein L11 methyltransferase [Desulfitobacterium
           hafniense DCB-2]
          Length = 312

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 72/226 (31%), Gaps = 17/226 (7%)

Query: 79  GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH------RLLDDAWR 132
           G   ++    E++ +           F    LT  S         H      R LD+  +
Sbjct: 26  GCPGVSVEDPELLQSYVESGNWDYHDFGEIALTGTSVVKGYICEDHELQPKLRQLDEGLK 85

Query: 133 ECAIRLRD-ALHARKYQIQLIGRANK-----TKICLDRDYVD----ERLTVAGRTLIYRQ 182
           E   R  +  L  +   +Q    A         + + R ++     E +T     +I   
Sbjct: 86  ELLQRFPEWVLQVKGLTVQEEDWATSWKAYFKPVRIGRHFLIKPSWEEVTPLPEDIILEL 145

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
                          +    L  T      + +L  G+G  ++  A+   +V A+++   
Sbjct: 146 DPGMAFGTGTHATTSLCLETLEETVKPDMRIFDLGTGSGILAIAAAKLGAQVEAIDLDSV 205

Query: 243 SVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           +V+ A+ N+  N   + + + +       Q        N + D+ +
Sbjct: 206 AVKVAQENVELNQVADRISVRQGDLGTVLQGQADLVVANIIADVIL 251


>gi|315649712|ref|ZP_07902796.1| methyltransferase small [Paenibacillus vortex V453]
 gi|315274900|gb|EFU38276.1| methyltransferase small [Paenibacillus vortex V453]
          Length = 201

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 20/107 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + A        +L++ CG G   L  A+      V  ++I   +VE A+ N   N ++NV
Sbjct: 51  IDAMEFQQNASVLDVGCGYGPIGLTAAKMVVDGHVTMIDINSRAVELAKENARRNGISNV 110

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
            I+                        +   +F  I  +PP R+G +
Sbjct: 111 TILESDLFAV-----------------VKDQQFDVILTNPPIRAGKE 140


>gi|228898854|ref|ZP_04063136.1| hypothetical protein bthur0014_880 [Bacillus thuringiensis IBL
           4222]
 gi|228860754|gb|EEN05132.1| hypothetical protein bthur0014_880 [Bacillus thuringiensis IBL
           4222]
          Length = 199

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 54  QMPDIKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           + S  E                      ++  I  +PP     D    +++ 
Sbjct: 114 QSSVYENVDG------------------KYAAILSNPPIRAGKDVVHEILEK 147


>gi|251799654|ref|YP_003014385.1| methyltransferase small [Paenibacillus sp. JDR-2]
 gi|247547280|gb|ACT04299.1| methyltransferase small [Paenibacillus sp. JDR-2]
          Length = 201

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 20/107 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + A        +L++ CG G   L  A+      V  ++I + +VE ++ N   N V+NV
Sbjct: 50  LDALVLAPSAQVLDVGCGYGPIGLTAAKLAPEGHVTMIDINERAVELSKENAKLNGVSNV 109

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
            IV+    E                  + + R+  I  +PP R+G  
Sbjct: 110 TIVQSDIYE-----------------SVKNNRYDVILTNPPIRAGKQ 139


>gi|260598214|ref|YP_003210785.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Cronobacter turicensis z3032]
 gi|260217391|emb|CBA31447.1| Protein methyltransferase hemK [Cronobacter turicensis z3032]
          Length = 280

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L +A  R    V A+++   +VE A+ N     
Sbjct: 98  LVEQALARLPATACRILDLGTGTGAIALAIASERPDCHVTALDVIPEAVELAKRNAQRLG 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++NV +++               F+ L D+     RF  I  +PP
Sbjct: 158 IDNVTVLQ------------SHWFSALTDV-----RFSLIVSNPP 185


>gi|261821676|ref|YP_003259782.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pectobacterium wasabiae WPP163]
 gi|261605689|gb|ACX88175.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Pectobacterium wasabiae WPP163]
          Length = 281

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L        D+L+L  G G  +L +A  RH   V+ V++   +V  A  N     
Sbjct: 98  LVEQALLRLPKKPCDVLDLGTGTGAIALAIASERHDCLVVGVDLQPEAVALATKNAQQLR 157

Query: 256 VNNVKIVRMS 265
           ++N + +  S
Sbjct: 158 LDNARFLPGS 167


>gi|239996063|ref|ZP_04716587.1| peptide release factor-glutamine N5-methyltransferase(HemK)
           [Alteromonas macleodii ATCC 27126]
          Length = 279

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 45/144 (31%), Gaps = 29/144 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN-VHMLEWVLAATKGIQGDLLELYC 218
           I   RD+    L  +  TLI R        P+  +   H+L W           + +L  
Sbjct: 71  IIGKRDFWTLSLFTSPDTLIPR--------PDTEVLVEHVLNWA-NQHSSASLSICDLGT 121

Query: 219 GNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           G G  +L LA       V  V+    +V  A  N  AN + N   V+             
Sbjct: 122 GTGAIALALASELPEASVTGVDFQAGAVNLATRNAQANSIANAHFVQSD----------- 170

Query: 277 REFNRLKDIDIHSYRFKTIFVDPP 300
                     +    F  I  +PP
Sbjct: 171 ------WFSALAGQTFDIIVSNPP 188


>gi|254428746|ref|ZP_05042453.1| Methyltransferase small domain family [Alcanivorax sp. DG881]
 gi|196194915|gb|EDX89874.1| Methyltransferase small domain family [Alcanivorax sp. DG881]
          Length = 324

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +L  + A T G  G ++++ CG G  S+ LAR   +V  V+++  +V A+  ++A N 
Sbjct: 173 ALLLAAMEAHTLGKPGKVIDMGCGAGVISVWLARQGWQVQGVDVSASAVAASTDSLARNG 232

Query: 256 VNN 258
           +  
Sbjct: 233 LQG 235


>gi|83942269|ref|ZP_00954730.1| hypothetical protein EE36_14552 [Sulfitobacter sp. EE-36]
 gi|83846362|gb|EAP84238.1| hypothetical protein EE36_14552 [Sulfitobacter sp. EE-36]
          Length = 408

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 15/121 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             AA       +L+++   G FSL  LA      +AV+ + P++E A+    A  V +  
Sbjct: 227 AFAANLTKGKRVLDVFAHVGGFSLAALAHGASSAVAVDGSAPALELAQQGAEAMGVTDRF 286

Query: 261 IVR-MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHI 318
             R   + +   A+R E E             F  +  DPP        +   ++AY  +
Sbjct: 287 ATRQGDAFDILTALRAEGE------------EFDVVICDPPAFAPGKPALEAGLRAYERV 334

Query: 319 L 319
            
Sbjct: 335 A 335


>gi|126631509|gb|AAI33896.1| LOC564078 protein [Danio rerio]
          Length = 475

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 18/218 (8%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
               + E +LRA L +   +TS    + V  I H  L +        +   +  +   I 
Sbjct: 156 YENFKSEEILRAVLPEGQGVTS--GFSRVGHIAHMNLREHQLPYRKLIGQVIIDKNPGIT 213

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS------FTQP--NAGINVHMLEWV 202
            +     T     R++  E L      ++ +  EN       F++   N  ++      V
Sbjct: 214 CVVNKTNTIDSTYRNFQMEVL-AGESNMVAKVRENGVLYEFDFSRVYWNPRLSTEHERIV 272

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
               +G    +++++ G G F++  AR    VLA ++   S    ++N   N V+  +  
Sbjct: 273 SLLHRG--DTVVDVFAGVGPFAIPAARRGCAVLANDLNPESFRWLQHNAKLNKVDQKITT 330

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             +  ++F +   RE    RL  +   S +   +   P
Sbjct: 331 SNLDGRDFIRGPVRE----RLPALMKGSQKIHVVMNLP 364


>gi|307298575|ref|ZP_07578378.1| Methyltransferase type 11 [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915740|gb|EFN46124.1| Methyltransferase type 11 [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 220

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 202 VLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            L       GD LL++  G G +++  + +  +V+ ++I++  +E AR NIA+  V NV+
Sbjct: 41  ALDYLDLDSGDTLLDIGTGRGRWAVAASPYCRKVIGIDISRRMLEDARSNIASAGVENVE 100

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
             R S     +    E   +R+    + +        DP +         +++    I+
Sbjct: 101 FFRGS----FENPCEEVNLSRMNINKVVAIYSLHHLTDPMKMEAISKLTQILKRPGRIV 155


>gi|229015503|ref|ZP_04172501.1| hypothetical protein bcere0030_990 [Bacillus cereus AH1273]
 gi|229021712|ref|ZP_04178294.1| hypothetical protein bcere0029_910 [Bacillus cereus AH1272]
 gi|228739580|gb|EEL89994.1| hypothetical protein bcere0029_910 [Bacillus cereus AH1272]
 gi|228745790|gb|EEL95794.1| hypothetical protein bcere0030_990 [Bacillus cereus AH1273]
          Length = 213

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 68  QMPDIKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNRIENIRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           + S  E                      ++  I  +PP     D    +++ 
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKDVVHEILEK 161


>gi|224496024|ref|NP_001139055.1| tRNA (guanine-N(1)-)-methyltransferase [Danio rerio]
 gi|220678649|emb|CAX14731.1| novel protein similar to H.sapiens TRMT5, TRM5 tRNA
           methyltransferase 5 homolog (S. cerevisiae) (TRMT5)
           [Danio rerio]
          Length = 480

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 81/218 (37%), Gaps = 18/218 (8%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
               + E +LRA L +   +TS    + V  I H  L +        +   +  +   I 
Sbjct: 161 YENFKSEEILRAVLPEGQGVTS--GFSRVGHIAHMNLREHQLPYRKLIGQVIIDKNPGIT 218

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS------FTQP--NAGINVHMLEWV 202
            +     T     R++  E L      ++ +  EN       F++   N  ++      V
Sbjct: 219 CVVNKTNTIDSTYRNFQMEVL-AGESNMVAKVRENGVLYEFDFSRVYWNPRLSTEHERIV 277

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
               +G    +++++ G G F++  AR    VLA ++   S    ++N   N V+  +  
Sbjct: 278 SLLHRG--DTVVDVFAGVGPFAIPAARRGCAVLANDLNPESFRWLQHNAKLNKVDQKITT 335

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             +  ++F +   RE    RL  +   S +   +   P
Sbjct: 336 SNLDGRDFIRGPVRE----RLPALMKGSQKIHVVMNLP 369


>gi|284166016|ref|YP_003404295.1| hypothetical protein Htur_2749 [Haloterrigena turkmenica DSM 5511]
 gi|284015671|gb|ADB61622.1| protein of unknown function Met10 [Haloterrigena turkmenica DSM
           5511]
          Length = 326

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
              + +++ G G F +  A+     + V++   +++  R N   N V + V       +E
Sbjct: 175 DEHVFDMFAGVGPFVIPFAKRGAECVGVDVNPEAIDYLRENARRNGVEDRVTATCDDVRE 234

Query: 269 FTQAMRRERE 278
                    +
Sbjct: 235 VAPGYEGWAD 244


>gi|207727539|ref|YP_002255933.1| predicted sam-dependent methyltransferase protein [Ralstonia
           solanacearum MolK2]
 gi|206590776|emb|CAQ56388.1| predicted sam-dependent methyltransferase protein [Ralstonia
           solanacearum MolK2]
          Length = 397

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  L      V++++ +  ++  A  N+  N  +  
Sbjct: 213 RALVGALAKDRDVLNCFCYTGGFSLAALKGGARSVVSIDSSGEALAVAERNVTLNGFDAA 272

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +   + +            F  L++      +F  I +DPP+            +AY  I
Sbjct: 273 RAEWLDA----------DVFKSLRNFRAEGRQFDLIVLDPPKFAASAQQVDRAARAYKEI 322


>gi|254439843|ref|ZP_05053337.1| Protein-L-isoaspartate O-methyltransferase superfamily
           [Octadecabacter antarcticus 307]
 gi|198255289|gb|EDY79603.1| Protein-L-isoaspartate O-methyltransferase superfamily
           [Octadecabacter antarcticus 307]
          Length = 217

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 19/126 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             MLE V      +   +L+L CG G  + VLA+  D V+AVE      + A+ N++ + 
Sbjct: 68  AKMLEAVDVQPNDV---VLDLGCGLGYSTAVLAQLADFVVAVEDEPDRAQEAQQNLSDHG 124

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           V+N  +   +                L D    +  +  I +      +    +  ++  
Sbjct: 125 VDNAAVFEGA----------------LVDGAAKNGPYDVIILQGAVEHIPSNLLAQIKDG 168

Query: 316 PHILYI 321
             I+ I
Sbjct: 169 GRIVAI 174


>gi|311693604|gb|ADP96477.1| modification methylase, HemK family [marine bacterium HP15]
          Length = 283

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 34/213 (15%)

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ--IQ 150
           ++  E LL+    +I+  + + D  ++      L   ++R    R     HA  ++  +Q
Sbjct: 6   SLTCEALLKEASSRIESDSPRLDAELLLSHITGLSRTSFRAWPEREVTDTHAEAFERLVQ 65

Query: 151 LIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                      L  +++    L V+  TLI R                ++E  LA     
Sbjct: 66  DRVAGRPVAHLLGHQEFWSLPLKVSASTLIPRPD-----------TECLVEVALALPLPR 114

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           Q  +L+L  G G  +L LA      R+ A +    +V  AR N  A  + N+ +V+ S  
Sbjct: 115 QASVLDLGTGTGAIALALASEHGGWRISACDAVPEAVALARENAVALGL-NLSVVQSS-- 171

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                              +   RF  I  +PP
Sbjct: 172 ---------------WFSGLEPERFDLIVSNPP 189


>gi|168703374|ref|ZP_02735651.1| methyltransferase small [Gemmata obscuriglobus UQM 2246]
          Length = 348

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 49/165 (29%), Gaps = 44/165 (26%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSL---VLARHFDRVLAVEIAKPSVEAARYNIA 252
             MLE            +L+L CGNG        +A    RV  ++ +  ++  A  N  
Sbjct: 197 RAMLEVA---EIRPGDTVLDLGCGNGAVGCLAGAMAGPDARVTFIDSSLRAIALAELNAK 253

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           AN V N + V                 N  +   +   +F  I  +PP     + T   +
Sbjct: 254 ANGVTNTRFV-----------------NATRLQGLEEDKFDVILANPPYYAKSEITRLFI 296

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLAL-------FDQF 350
           +                RDL      + +            FD F
Sbjct: 297 EG--------------ARDLLKPGGRYYLVTKMPTAVMPLIFDTF 327


>gi|294650078|ref|ZP_06727462.1| protein-glutamine N-methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292824029|gb|EFF82848.1| protein-glutamine N-methyltransferase [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 273

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 36/225 (16%)

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK------IC 161
             + S   Q    L+ H +L     E  +RL   L   + Q  L G A   +      + 
Sbjct: 11  GEIDSYERQEAAWLLEH-ILGVNSLELKLRLEQELTEIQEQAYLDGLARIEQGEPLAYVT 69

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
             + +    L V   TL+ R                ++E VL  +   Q ++++L  G G
Sbjct: 70  GSQPFWTLDLKVTHDTLVPRPD-----------TEILVETVLKLSLDPQANIVDLGTGTG 118

Query: 222 NFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
             +L LA  R    V A +I +P+++ A+ N   + ++ VK    +              
Sbjct: 119 AIALALASERPQWSVTATDIYQPTLDVAQDNALKHGLSLVKFACGA-------------- 164

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
               +  +   +F  I  +PP    DD  +  +++ P    I+ N
Sbjct: 165 --WFEALVEQQQFDLIVSNPPYIDPDDVHMQKLKSEPERALIAAN 207


>gi|58267256|ref|XP_570784.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227018|gb|AAW43477.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 427

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ +CG G  ++  A+  +RV+A++     ++ AR+N   +   + ++ +     EF +
Sbjct: 251 IVDAFCGVGGNAIAFAKTCERVIAIDNDITRLKLARHNALHHGVADRIEFILGDYTEFAR 310

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           +   +              +   +F+ PP  G+D
Sbjct: 311 SFAEKN----------PGDKIDVVFLSPPWGGID 334


>gi|134111829|ref|XP_775450.1| hypothetical protein CNBE1650 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258109|gb|EAL20803.1| hypothetical protein CNBE1650 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 427

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ +CG G  ++  A+  +RV+A++     ++ AR+N   +   + ++ +     EF +
Sbjct: 251 IVDAFCGVGGNAIAFAKTCERVIAIDNDITRLKLARHNALHHGVADRIEFILGDYTEFAR 310

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           +   +              +   +F+ PP  G+D
Sbjct: 311 SFAEKN----------PGDKIDVVFLSPPWGGID 334


>gi|322371733|ref|ZP_08046276.1| protein-L-isoaspartate O-methyltransferase [Haladaptatus
           paucihalophilus DX253]
 gi|320548618|gb|EFW90289.1| protein-L-isoaspartate O-methyltransferase [Haladaptatus
           paucihalophilus DX253]
          Length = 201

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V  A  G    +L+L  G G  +L LA   +RV+  +I++  ++ AR     N + NV+ 
Sbjct: 36  VDHADPGANDTVLDLGTGTGAIALALAPGAERVIGRDISEGMLDEARTKAEENGIENVEF 95

Query: 262 VRMSSKE 268
                ++
Sbjct: 96  GEGRFRD 102


>gi|317507578|ref|ZP_07965293.1| methyltransferase domain-containing protein [Segniliparus rugosus
           ATCC BAA-974]
 gi|316254125|gb|EFV13480.1| methyltransferase domain-containing protein [Segniliparus rugosus
           ATCC BAA-974]
          Length = 228

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L     I+G +L+  CG G  S+ LA     V+ ++++  +VE AR   A   V+  + 
Sbjct: 39  ALEERGEIRGAVLDAGCGVGVTSVWLAERGHEVVGLDLSAVAVERARRLAAERGVS-AQF 97

Query: 262 VRMSSKEF 269
                 EF
Sbjct: 98  AAADLSEF 105


>gi|220933706|ref|YP_002512605.1| HemK protein, putative protoporphyrinogen oxidase [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995016|gb|ACL71618.1| HemK protein, putative protoporphyrinogen oxidase [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 274

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 26/155 (16%)

Query: 195 NVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L         DL +L  G+G  +L LA  R   RV+A + +  ++  A  N 
Sbjct: 91  TELLVETALGLIPTDAAWDLADLGTGSGAIALALASERPACRVVATDKSPGALAVAEANA 150

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             + + N++ V+                       +   RF  +  +PP   + +A   +
Sbjct: 151 RDHGLANLRFVQGE-----------------WWAPLAGERFHLVVSNPPY--VAEADPHL 191

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
            +           P +L      L     I + A 
Sbjct: 192 ARGDLRFE----PPTALASGPDGLDDLRRIIKAAP 222


>gi|295698658|ref|YP_003603313.1| protein methyltransferase HemK (Protein-glutamine
           N-methyltransferase hemK) (Protein-(glutamine-N5) MTase
           hemK) [Candidatus Riesia pediculicola USDA]
 gi|291157335|gb|ADD79780.1| protein methyltransferase HemK (Protein-glutamine
           N-methyltransferase hemK) (Protein-(glutamine-N5) MTase
           hemK) [Candidatus Riesia pediculicola USDA]
          Length = 190

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 20/135 (14%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNI 251
             H++E  L      +G  +L+L  G G  SL LA+      ++  +I +  +  AR N 
Sbjct: 7   TEHLVELALKLANKKKGLKILDLGAGAGPISLALAKELQSSFIVGTDIDESVISIARANA 66

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           +   + NVK                 + N          +F  I  +PP    DD  +  
Sbjct: 67  SNLSIRNVKF---------------LKSNWFDCFHKKKKKFDLIVSNPPYISKDDPCLKF 111

Query: 312 --VQAYPHILYISCN 324
             ++  P    IS N
Sbjct: 112 GDLRYEPRRALISSN 126


>gi|75763956|ref|ZP_00743584.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74488558|gb|EAO52146.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 213

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 68  QMPDIKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           + S  E                      ++  I  +PP     D    +++ 
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKDVVHEILEK 161


>gi|307595611|ref|YP_003901928.1| methyltransferase [Vulcanisaeta distributa DSM 14429]
 gi|307550812|gb|ADN50877.1| methyltransferase small [Vulcanisaeta distributa DSM 14429]
          Length = 214

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 23/125 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                      +L+L CG G F++  A     +V+ V+I   ++  A+ + +   +NNV 
Sbjct: 49  AYMRNYLTNARVLDLGCGTGRFAIAAALMGARQVICVDIDPEALTIAKESASEYGLNNVD 108

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVGMVQAY 315
            V    +                     + +F  IF +PP       GLD   +     +
Sbjct: 109 FVTNDVRNMA-----------------ITGKFNVIFQNPPFGIQSERGLDVKFLTTAINH 151

Query: 316 PHILY 320
            +I+Y
Sbjct: 152 SNIIY 156


>gi|118092135|ref|XP_421419.2| PREDICTED: similar to tRNA-(N1G37) methyltransferase [Gallus
           gallus]
          Length = 442

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
               + E +LRA L +   +TS    + V  I H  L D        +   +  +   I 
Sbjct: 117 YENFKSEEILRAVLPEGQDVTS--GFSRVGHIAHVNLRDHQLPYRHLIGQVIVDKNPGIT 174

Query: 151 LIGRANKTKIC--LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
            +   NKT I     R++  E L      L+ +  EN+FT     ++   + W    +  
Sbjct: 175 CVV--NKTSIIDSTYRNFQMEVL-AGENNLVTKVKENNFT---YELDFAKVYWNPRLSTE 228

Query: 209 --------IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
                     GD+L +++ G G F++  AR    V A ++   S     +N   N V+N 
Sbjct: 229 HGRIVELLKPGDVLFDVFAGIGPFAIPAARKKCVVFANDLNPESYHWLLHNCKLNKVDNK 288

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +K   M  ++F     RE     L         F  +   P
Sbjct: 289 IKAFNMDGRDFLLGPVREELRKELTLAKEQKTAFHIVMNLP 329


>gi|307103629|gb|EFN51887.1| hypothetical protein CHLNCDRAFT_8704 [Chlorella variabilis]
          Length = 425

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 5/128 (3%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN- 258
                       +L+L C  G F+L  A      VL V+ + P+VE A  N A N   + 
Sbjct: 242 RAAVRQLASGLRVLDLCCYAGGFALSAAAGGAGEVLGVDSSAPAVELAARNAALNGWQDV 301

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---LDDATVGMVQAY 315
              VR    EF +  R  R    L   D          +D        L+   + +V+  
Sbjct: 302 CSFVRGDVTEFMKQARACRRRWDLVVFDPPKLAPSRKALDKATRKYRRLNALAIQLVEPG 361

Query: 316 PHILYISC 323
             ++  SC
Sbjct: 362 GLLMTCSC 369


>gi|300716407|ref|YP_003741210.1| protein methyltransferase [Erwinia billingiae Eb661]
 gi|299062243|emb|CAX59360.1| Protein methyltransferase [Erwinia billingiae Eb661]
          Length = 276

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 23/163 (14%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     + ++T +S   I+      L  +   +      D L AR+   + +        
Sbjct: 22  RDAEILLGFVTGKSRSWIIAFDDSELSAEQLSQL-----DDLLARRANGEPVAYLTGQ-- 74

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
              R++    L+V+  TLI R                ++E  LA        +L+L  G 
Sbjct: 75  ---REFWSLSLSVSPDTLIPRPD-----------TELLVEQALAHLPETASTVLDLGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           G  +L +A  R   +V  V+    +V  A  N     + N + 
Sbjct: 121 GAIALAIASERPDCQVTGVDRIAAAVSLAESNAQRLGITNARF 163


>gi|268325441|emb|CBH39029.1| conserved hypothetical protein, Met-10+ like-protein family
           [uncultured archaeon]
 gi|268325748|emb|CBH39336.1| conserved hypothetical protein, Met-10+ like-protein family
           [uncultured archaeon]
          Length = 367

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 72/203 (35%), Gaps = 13/203 (6%)

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL 127
           +E + +  F+     I+     +   +   P     +  I   TS  D   +T    + +
Sbjct: 55  REEVGVTEFLTADFAISEPRRSIEDILGFRPAYE-IIGDIAVFTSDGDS--ITETNEQRV 111

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS- 186
                     ++  +  R   ++ + R  K KI    +   E +        Y+      
Sbjct: 112 AHTILNLHKNIK-VVAKRISPVEGVFRNRKLKILAGENR-TETIH-KENGCRYKLDPEKV 168

Query: 187 -FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPS 243
            F   N G+        +   +     +++++ G G+FS+ +A+   +  V A++I   +
Sbjct: 169 YF---NPGLAGERNRVAMQVERSKNELIIDMFAGVGSFSIQIAKRAPQSIVTAIDINPDA 225

Query: 244 VEAARYNIAANHVNNVKIVRMSS 266
           +     N+  N V N++ +    
Sbjct: 226 IRYLHENMEQNGVRNIEPIEGDV 248


>gi|197121897|ref|YP_002133848.1| PUA domain containing protein [Anaeromyxobacter sp. K]
 gi|196171746|gb|ACG72719.1| PUA domain containing protein [Anaeromyxobacter sp. K]
          Length = 400

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 19/136 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAA 253
           N  M+  +       + + L L+   G FS+  A      V+ V++ + ++  AR N  A
Sbjct: 213 NRRMVRDLAR----GRAEALNLFGYTGGFSVAAALGGAGHVVTVDVDRDAIALARENFHA 268

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++              A   E  F  L        RF  +  DPP        V    
Sbjct: 269 NGLDAAD----------HAFAAEDCFELLARYKREGRRFDLVVCDPPAFAKSQKAVEGAL 318

Query: 314 AYPHILYISCNPDSLC 329
           A     Y S N  +L 
Sbjct: 319 AG----YASLNRAALA 330


>gi|187922353|ref|YP_001893995.1| PUA domain containing protein [Burkholderia phytofirmans PsJN]
 gi|187713547|gb|ACD14771.1| PUA domain containing protein [Burkholderia phytofirmans PsJN]
          Length = 400

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L        ++L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 216 RLLVQQLAQDREVLNCFCYTGGFSLAALKGGAKRVVSIDSSGDALAIAQQNVAANGFDAE 275

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F       +   RL D      RF  I +DPP+  
Sbjct: 276 RATWLDADAF-------KTLRRLHD---EGERFDLIVLDPPKFA 309


>gi|156933677|ref|YP_001437593.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156531931|gb|ABU76757.1| hypothetical protein ESA_01499 [Cronobacter sakazakii ATCC BAA-894]
          Length = 285

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V A+++   +V  A+ N     
Sbjct: 98  LVEQALARLPATPCCILDLGTGTGAIALALASERPDCHVTALDVIPEAVALAKRNAQRLG 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++NV I++               F+ L D+     RF  I  +PP
Sbjct: 158 IDNVTILQ------------SHWFSALTDV-----RFSLIVSNPP 185


>gi|332158379|ref|YP_004423658.1| sterol biosynthesis methyltransferase related protein [Pyrococcus
           sp. NA2]
 gi|331033842|gb|AEC51654.1| sterol biosynthesis methyltransferase related protein [Pyrococcus
           sp. NA2]
          Length = 228

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LE +L      +G +L+L CG G FS +L  H   V+ ++I++  +E+A+    A     
Sbjct: 29  LEPLLIKYMPRRGKVLDLACGVGGFSFLLEDHGFEVVGIDISEEMIESAKRYAEARESK- 87

Query: 259 VKIVRMSSKEF 269
           V+ +   +K+ 
Sbjct: 88  VEFLVGDAKKI 98


>gi|330502034|ref|YP_004378903.1| HemK family modification methylase [Pseudomonas mendocina NK-01]
 gi|328916320|gb|AEB57151.1| HemK family modification methylase [Pseudomonas mendocina NK-01]
          Length = 277

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 19/119 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L          L+L  G G  +L LA  R   +V  V+  + +V  A  N  
Sbjct: 94  TELLVETALDLLPATPLVALDLGTGTGAIALALASERPAWQVTGVDRIEEAVALAERNRQ 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
              + N + V                F+ L        R+  I  +PP    DD  +  
Sbjct: 154 RLQLGNARFVH------------SHWFSALP-----GQRYGLILSNPPYIRADDQHLEQ 195


>gi|330009866|ref|ZP_08306622.1| protein-(glutamine-N5) methyltransferase [Klebsiella sp. MS 92-3]
 gi|328534692|gb|EGF61257.1| protein-(glutamine-N5) methyltransferase [Klebsiella sp. MS 92-3]
          Length = 283

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV++   +V  A  N     
Sbjct: 99  LVEQALARLPTAPCRILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAEHLG 158

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + NV I +               F+ L        RF TI  +PP
Sbjct: 159 IANVTISQSD------------WFSEL-----DGQRFATIVSNPP 186


>gi|308177223|ref|YP_003916629.1| site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
 gi|307744686|emb|CBT75658.1| putative site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
          Length = 194

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 12/131 (9%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +   + +        +L+L+ G+G+  +   +R   +V+ VE A  +V   ++N A
Sbjct: 29  VKEALFSRLESWDILSGARVLDLFAGSGSLGIETASRGARQVVLVEKAPKAVAVCQHNAA 88

Query: 253 A----NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                   N V + R +                     + S  F  + +DPP    ++  
Sbjct: 89  LVNKVLKTNTVTVQRGNVDSVLDGYYNAIS-------GVPSKTFDVVLMDPPYPLAEEEL 141

Query: 309 VGMVQAYPHIL 319
              ++    IL
Sbjct: 142 AITLEKISKIL 152


>gi|150399368|ref|YP_001323135.1| methyltransferase-like protein [Methanococcus vannielii SB]
 gi|150012071|gb|ABR54523.1| methyltransferase related protein [Methanococcus vannielii SB]
          Length = 381

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L         +L++    G FS+        V A++I++ +   A+ N+  N + N   +
Sbjct: 201 LENYVKKGDKVLDICSYTGGFSVHAGIRGAEVTAIDISEKASIQAKENMELNDIKNYNFL 260

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++ +  + M +  +             +  + +DPP
Sbjct: 261 TGNAFDLMKEMIKNND------------VYDVVILDPP 286


>gi|85703285|ref|ZP_01034389.1| hypothetical protein ROS217_21127 [Roseovarius sp. 217]
 gi|85672213|gb|EAQ27070.1| hypothetical protein ROS217_21127 [Roseovarius sp. 217]
          Length = 398

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 30/160 (18%)

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
              Y+ + L      L Y Q  N                  AA       +L+++   G 
Sbjct: 193 GAIYMADLLGGQKTGLFYDQRPN---------------HAFAARLTKGARVLDMFSHVGG 237

Query: 223 FSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFN 280
           FSL  LA   D  LAV+ ++P++  A    A           R  + +  +A+  E    
Sbjct: 238 FSLAALASGADHALAVDGSEPALSLAADGAARMGASERFTTRRGDAFDVMEALAAE---- 293

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
                     RF  +  DPP        +   ++AY  + 
Sbjct: 294 --------GARFDVVICDPPAFAPTKQAMEKGLRAYERVA 325


>gi|229188386|ref|ZP_04315434.1| hypothetical protein bcere0002_880 [Bacillus cereus ATCC 10876]
 gi|228595060|gb|EEK52831.1| hypothetical protein bcere0002_880 [Bacillus cereus ATCC 10876]
          Length = 213

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 68  QMPDIKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 167


>gi|206972250|ref|ZP_03233197.1| ybxB protein [Bacillus cereus AH1134]
 gi|228950649|ref|ZP_04112783.1| hypothetical protein bthur0006_890 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229077398|ref|ZP_04210055.1| hypothetical protein bcere0023_1120 [Bacillus cereus Rock4-2]
 gi|206732824|gb|EDZ49999.1| ybxB protein [Bacillus cereus AH1134]
 gi|228705911|gb|EEL58240.1| hypothetical protein bcere0023_1120 [Bacillus cereus Rock4-2]
 gi|228809000|gb|EEM55485.1| hypothetical protein bthur0006_890 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 199

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 54  QMPDIKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 114 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 153


>gi|168044055|ref|XP_001774498.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674210|gb|EDQ60722.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 208

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 45/129 (34%), Gaps = 23/129 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARY 249
             I   ML     +   I G ++ +L CG G   +  A     +V+ V++ + ++  A+ 
Sbjct: 30  PHIASRMLYMAENSFGDITGKVVADLGCGCGTLGIAAALLDAGQVVGVDVDEDALALAQE 89

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
           N     V           +  QA         L ++ +      T+ ++PP    R G D
Sbjct: 90  NCEELEVEM---------DLIQA--------NLSELPLQGLVVDTVVMNPPFGTRRKGAD 132

Query: 306 DATVGMVQA 314
              +     
Sbjct: 133 MEFLAAALK 141


>gi|163814767|ref|ZP_02206156.1| hypothetical protein COPEUT_00918 [Coprococcus eutactus ATCC 27759]
 gi|158450402|gb|EDP27397.1| hypothetical protein COPEUT_00918 [Coprococcus eutactus ATCC 27759]
          Length = 399

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G+F+L         VL V+ ++ ++  AR N   N + 
Sbjct: 211 YNRLAIQKLCKGAKVLDCFTHTGSFALNAGIAGASSVLGVDASELAIAQARENAVLNGLE 270

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316
           +           T +      F+ L +++    +F  + +DPP       ++   V+ Y 
Sbjct: 271 D-----------TVSFECRDVFDLLPELESKGEKFDVVILDPPAFTKSRNSIKNAVKGYR 319

Query: 317 HI 318
            I
Sbjct: 320 EI 321


>gi|15669072|ref|NP_247877.1| hypothetical protein MJ_0882 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2842581|sp|Q58292|Y882_METJA RecName: Full=Putative protein methyltransferase MJ0882
 gi|1499712|gb|AAB98886.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 197

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 15/112 (13%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
               D+L+L CG G   + LA         +I + +++ A+ NI  N+++N   +R+   
Sbjct: 54  DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYD-IRVVHS 112

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +  +              ++   ++  I  +PP     +    +++    +L
Sbjct: 113 DLYE--------------NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELL 150


>gi|260940781|ref|XP_002615230.1| hypothetical protein CLUG_04112 [Clavispora lusitaniae ATCC 42720]
 gi|238850520|gb|EEQ39984.1| hypothetical protein CLUG_04112 [Clavispora lusitaniae ATCC 42720]
          Length = 248

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                 +       ++        ++L++ CG G  ++  A+ F  V  V++   +++ +
Sbjct: 52  YSVTPEVTARFTARLVKKLLPDCENILDVCCGGGGNTIQFAKIFKNVGGVDVNANNIKCS 111

Query: 248 RYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++N     V+ N   V+           +  E +    +D+ + +F  IF  PP  G
Sbjct: 112 QHNSTVYGVDANTWFVQGD-------WNKLSEDSSWIPVDLPNGKFDFIFCSPPWGG 161


>gi|91781470|ref|YP_556676.1| SAM-dependent methyltransferase [Burkholderia xenovorans LB400]
 gi|91685424|gb|ABE28624.1| 23S rRNA m(5)C-1962 methyltransferase / SAM-dependent
           methyltransferase [Burkholderia xenovorans LB400]
          Length = 400

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 29/188 (15%)

Query: 129 DAWRECAIRLRDALHA-----RKYQIQLIGRANKTKI--CLDRDYVDERLTVAGRTLIYR 181
           +AW+E  +              +  + +  +    +I   L  +   E L V+   + Y 
Sbjct: 138 EAWKEAIVAALTGATGCPNVYERSDVSIRQKEGLEQITGVLAGEPPSEALIVSENDVRYH 197

Query: 182 QI-----ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVL 235
                  +  F   +   N  +++ +         D+L  +C  G FSL  L     RV+
Sbjct: 198 VDVRNGHKTGFY-VDQRDNRPLVQQLAQDR-----DMLNCFCYTGGFSLAALKGGAKRVV 251

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           +++ +  ++  A+ N+AAN  +  +   + +  F       +   RL D      RF  +
Sbjct: 252 SIDSSGDALAIAQQNVAANGFDAERATWLDADAF-------KTLRRLYD---DGERFDLV 301

Query: 296 FVDPPRSG 303
            +DPP+  
Sbjct: 302 VLDPPKFA 309


>gi|325190286|emb|CCA24762.1| trimethylguanosine synthase putative [Albugo laibachii Nc14]
          Length = 753

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 186 SFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           S+       I  H+ E V        G +++L+ G G  ++ LA+    V+A+EI    +
Sbjct: 576 SWYSVTPQAIAEHIAERVRC------GTVVDLFAGCGGNTIQLAQTCHHVIAIEIDPLRI 629

Query: 245 EAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREF 279
             A++N     V + ++ +   + E    ++ +  F
Sbjct: 630 HKAKHNAQVYGVSDRIEWICGDALEVISRLQADVIF 665


>gi|254383284|ref|ZP_04998637.1| RNA methylase [Streptomyces sp. Mg1]
 gi|194342182|gb|EDX23148.1| RNA methylase [Streptomyces sp. Mg1]
          Length = 192

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 18/120 (15%)

Query: 198 MLEWVLAATKGIQG----DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           M E + +  + + G     +L+LY G+G   L  L+R   R L VE    + +A R NI 
Sbjct: 29  MREGLFSTWESLHGVEGARVLDLYAGSGAVGLESLSRGAGRALLVEPDAKAAKAIRDNIE 88

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           A  +   +     +++   A                   +  +F+DPP +        ++
Sbjct: 89  AVGLPGAEFRAGKAEQIVAA-------------AAQGEPYDIVFLDPPYAVDHQELREIL 135


>gi|297582440|ref|YP_003698220.1| methyltransferase small [Bacillus selenitireducens MLS10]
 gi|297140897|gb|ADH97654.1| methyltransferase small [Bacillus selenitireducens MLS10]
          Length = 201

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 21/107 (19%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH-VNNVKIVR 263
              +GDLL++ CG G   + LA      R+  +++ + SVE AR N  AN   +NV I +
Sbjct: 56  PETEGDLLDIGCGWGPIGIALAMSTDQRRINMIDVNERSVELARLNAEANGVADNVHIEQ 115

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATV 309
             + E                  +       I  +PP R+G D    
Sbjct: 116 RDATE-----------------GLPGDGCAAILTNPPIRAGKDVVFA 145


>gi|157130331|ref|XP_001655665.1| hypothetical protein AaeL_AAEL011749 [Aedes aegypti]
 gi|108871917|gb|EAT36142.1| conserved hypothetical protein [Aedes aegypti]
          Length = 305

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 16/122 (13%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARY 249
           + I  HML  +      ++   +L+L CG G  S+  A      V+ VEI   ++E  + 
Sbjct: 127 SHIASHMLYTIQTNYDDLENKLVLDLGCGAGMLSVGAALLGAAHVVGVEIDADAIEIFKG 186

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           NI    ++NV  ++                  ++DID   ++F T+ ++PP     ++ +
Sbjct: 187 NIEGFELDNVDCIQWDVL-------------GMEDIDFE-HKFDTVLMNPPFGTKQNSGI 232

Query: 310 GM 311
            M
Sbjct: 233 DM 234


>gi|302561467|ref|ZP_07313809.1| ubiquinone/menaquinone biosynthesis methyltransferase [Streptomyces
           griseoflavus Tu4000]
 gi|302479085|gb|EFL42178.1| ubiquinone/menaquinone biosynthesis methyltransferase [Streptomyces
           griseoflavus Tu4000]
          Length = 206

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 9/128 (7%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +     E +        GD+L+L CG G+ +L+ A    RV  V+ +   V  AR  +
Sbjct: 34  PEVRAAWAERLRDWLPERAGDVLDLGCGTGSLALLAAGQGHRVTGVDRSPAMVALAREKL 93

Query: 252 AANHVNNVKIVRMSS------KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           A     +   +   +      +E    +        L + D     ++ +     R  L 
Sbjct: 94  AGR---DAVFLVGDAAAPPVGEERYDTVLVRHVLWTLPEPDRALRHWRDLLRPGGRLVLV 150

Query: 306 DATVGMVQ 313
           +   G V 
Sbjct: 151 EGVWGTVS 158


>gi|299821048|ref|ZP_07052936.1| methyltransferase domain protein [Listeria grayi DSM 20601]
 gi|299816713|gb|EFI83949.1| methyltransferase domain protein [Listeria grayi DSM 20601]
          Length = 200

 Score = 55.4 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A     G +L++ CG G   L LA+     R+  V++ + ++E A+ N   NH++N  I 
Sbjct: 54  APNSTDGKVLDVGCGYGPIGLALAKAYPAMRIDMVDVNERAIELAKENATLNHIDNAAIF 113

Query: 263 RMSSKE 268
             S  E
Sbjct: 114 ESSVYE 119


>gi|325106620|ref|YP_004267688.1| methyltransferase type 11 [Planctomyces brasiliensis DSM 5305]
 gi|324966888|gb|ADY57666.1| Methyltransferase type 11 [Planctomyces brasiliensis DSM 5305]
          Length = 423

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 34/191 (17%)

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           +AI+ L+  RL  + W        ++    +++ Q       +            +   G
Sbjct: 168 EAILQLLQERLGTEHWCISTAPHTESTEGYEHEPQFSEGCPNSV----------TIEEFG 217

Query: 176 RTLIYRQIEN---SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--H 230
                +  E     F            + +     G +  +L+L C +G FSL   R   
Sbjct: 218 TRFRVQFSEGHKTGFF----CDQRENRKRIADFCGGAK--VLDLCCYSGGFSLQADRLGG 271

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
            + V  V++ + +V  AR N   N+   VK V                F  ++D+  +  
Sbjct: 272 AEEVTGVDLDEAAVAMARNNAKLNN-QKVKFVHADV------------FPYMRDMLRNGN 318

Query: 291 RFKTIFVDPPR 301
            +  + +DPP+
Sbjct: 319 TYDVVILDPPK 329


>gi|289422554|ref|ZP_06424397.1| SAM dependent methyltransferase [Peptostreptococcus anaerobius
           653-L]
 gi|289157126|gb|EFD05748.1| SAM dependent methyltransferase [Peptostreptococcus anaerobius
           653-L]
          Length = 290

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNGNF 223
           E  T+    L ++     F           +   M++ + +A + I+  +L L+   G  
Sbjct: 73  EMWTINYGKLTFKIKPTGFKHTGLFPEQAANWDWMMDKISSAKRPIK--VLNLFAYTGGA 130

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNR 281
           S+  A     V  V+ AK  V  A+ N+  + + +  V+ +     +F      ERE  R
Sbjct: 131 SVACASAGAEVCHVDAAKGMVNWAKENLELSGLKDRKVRFIVDDVFKFV-----EREVRR 185

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA 307
                    ++  I +DPP  G    
Sbjct: 186 -------GNKYDAIIMDPPSYGRGPK 204


>gi|237744128|ref|ZP_04574609.1| methyltransferase [Fusobacterium sp. 7_1]
 gi|229431357|gb|EEO41569.1| methyltransferase [Fusobacterium sp. 7_1]
          Length = 370

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 32/160 (20%)

Query: 163 DRDYVDERLTV---AGRTLIYRQIENSF----TQPNAGI------NVHMLEWVLAATKGI 209
           D+D + E L +     + L Y   E  F     + N G+         ++E  +   + +
Sbjct: 122 DKDKIREMLVLRAKKRKPLQYILGEWEFYGLPFKVNEGVLIPRADTEILVEQCIQLMREV 181

Query: 210 Q-GDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +  ++L++  G+G  S+ +A       V  ++I + ++E A  N   N + NV  +    
Sbjct: 182 EEPNILDIGSGSGAISIAIANELKSSSVTGIDINEKAIELAIENKTLNKIENVNFI---- 237

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                      E N  + +D   +++  I  +PP    ++
Sbjct: 238 -----------ESNLFEKLD-KDFKYDLIVSNPPYISKEE 265


>gi|187930761|ref|YP_001901248.1| PUA domain-containing protein [Ralstonia pickettii 12J]
 gi|187727651|gb|ACD28816.1| PUA domain containing protein [Ralstonia pickettii 12J]
          Length = 400

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  L      V++++ +  ++  A  N+  N  +  
Sbjct: 216 RALVGALARDRDVLNCFCYTGGFSLAALKGGARSVVSIDSSGEALAVAERNVTLNGFDPA 275

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +   + +            F  L++      +F  I +DPP+            +AY  I
Sbjct: 276 RAEWLDA----------DVFKSLRNFRAEGRQFDLIVLDPPKFAASAQQVDRAARAYKEI 325


>gi|194334013|ref|YP_002015873.1| hypothetical protein Paes_1197 [Prosthecochloris aestuarii DSM 271]
 gi|194311831|gb|ACF46226.1| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271]
          Length = 394

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 28/168 (16%)

Query: 159 KICLDRD----YVDERLTVAGRTLIYRQIENSFT--QPNAGINVHMLEWVLAATKGIQGD 212
           KI L  +     +     +  +T ++   +  F   Q     N  M+  + A       D
Sbjct: 170 KIVLGSETDAQPIIYDTGIRYKTHLFEGHKTGFFLDQ---RENRRMIRKLAA-----NAD 221

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L+++  +G F L  L      +  V+++  ++  A  N   N+  N   ++  + +  +
Sbjct: 222 TLDVFSSDGGFGLNALHGGASALTMVDVSVDALARAEENARLNNFGNCCALQGDAFDVMK 281

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
            + +E               +  + +DPP            +QAY  +
Sbjct: 282 NLIKE------------GKSYDLVILDPPSFTKSRKNLPTALQAYKKL 317


>gi|167465651|ref|ZP_02330740.1| possible 16S rRNA methyltransferase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 171

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 20/105 (19%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A        +L++ CG G   L  A+      V  ++I + +VE A+ N   NH++NV I
Sbjct: 52  AMELPKDARILDVGCGYGPIGLTAAKLCPAGHVTLIDINERAVELAKLNARNNHISNVTI 111

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
           ++ +  E                  +   +F  I  +PP R+G  
Sbjct: 112 LQSNLFE-----------------HVRDQKFDVILTNPPIRAGKQ 139


>gi|240102669|ref|YP_002958978.1| SAM-dependent methyltransferase, putative [Thermococcus
           gammatolerans EJ3]
 gi|239910223|gb|ACS33114.1| SAM-dependent methyltransferase, putative [Thermococcus
           gammatolerans EJ3]
          Length = 455

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
            L         +L+++   G F++  A    D V+AV+ +  ++   + N   N V + +
Sbjct: 266 ALEKYVKPGMRVLDVFTYTGGFAIHAAVAGADEVVAVDKSPWAINMVKENAKLNGVEDRM 325

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           + +  S+            F  ++++     +F  + +DPP     +  + 
Sbjct: 326 RYITGSA------------FPVMEEMIKKGEKFDIVILDPPAFVQHEKDLK 364


>gi|125974030|ref|YP_001037940.1| SAM-dependent methyltransferase [Clostridium thermocellum ATCC
           27405]
 gi|125714255|gb|ABN52747.1| SAM-dependent methyltransferase [Clostridium thermocellum ATCC
           27405]
          Length = 409

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 14/123 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G+F L  A    + V  V+I++ +++ A+ N   N ++
Sbjct: 223 YNRAAVARIAKGKRVLDCFTHTGSFGLNAALGGAEHVTCVDISQSAIDMAKANAVRNGLD 282

Query: 258 N-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAY 315
             +  V     +    +  +             + +  I +DPP       TV    + Y
Sbjct: 283 GKMDFVCEDVFDLLTKLAEQ-----------KCHDYDYIILDPPAFTKSRKTVQSAARGY 331

Query: 316 PHI 318
             I
Sbjct: 332 KEI 334


>gi|332306459|ref|YP_004434310.1| PUA domain containing protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173788|gb|AEE23042.1| PUA domain containing protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 395

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 38/163 (23%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFS-LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
             +AA      D+L  +C  G F    LA   + V  ++++  ++E A+ N+  N ++N 
Sbjct: 211 RAIAAQYAKDRDVLNCFCYTGTFGSYALAAGANSVTNLDVSDLALETAKRNVEINQLDNS 270

Query: 259 -VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
             + +                F  L++    S +F  I +DPP+     A++        
Sbjct: 271 KCEFINNDV------------FQALREYKAQSKQFSQIILDPPKFVDSKASLNRACRG-- 316

Query: 318 ILYISCNPDSLCRDLSILS----------TTHTIERLALFDQF 350
             Y         +D+++L+           T +   L  FD F
Sbjct: 317 --Y---------KDINMLAMQIMEPGGILATFSCSGLMPFDLF 348


>gi|242060686|ref|XP_002451632.1| hypothetical protein SORBIDRAFT_04g004900 [Sorghum bicolor]
 gi|241931463|gb|EES04608.1| hypothetical protein SORBIDRAFT_04g004900 [Sorghum bicolor]
          Length = 460

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 15/109 (13%)

Query: 210 QGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVK--IVRMSS 266
              +L+L C +G F+L  A+   D V+ ++ +  +++ A  NI  N +N+ K   V+  +
Sbjct: 284 DQRVLDLCCYSGGFALNAAKGGADNVIGIDSSGLALDLANENIVLNELNHGKISFVKGDA 343

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             F +    E E             +  + +DPP+       +      
Sbjct: 344 TTFMKGAISENEL------------WDLVILDPPKLAPRKKVLQSASGM 380


>gi|182414387|ref|YP_001819453.1| oxidoreductase [Opitutus terrae PB90-1]
 gi|177841601|gb|ACB75853.1| oxidoreductase [Opitutus terrae PB90-1]
          Length = 413

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 32/140 (22%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L A       +L+L C  G FSL   +A   + V +V++ + ++  A+ N   N    +K
Sbjct: 231 LLAKFTRGARVLDLCCYTGGFSLNAKVAGGAEEVTSVDLDEAAIAQAKRNANLNQAR-LK 289

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG----------------- 303
            V   +  + + M++            +  ++  + +DPP+                   
Sbjct: 290 FVHADAFAYARQMQQ------------NGEKWDVVVLDPPKFIFTRDDHGNWEGRQKYED 337

Query: 304 LDDATVGMVQAYPHILYISC 323
           L+   + +V+     +  SC
Sbjct: 338 LNLLAISLVKPGGIFVTCSC 357


>gi|134045331|ref|YP_001096817.1| SAM-dependent methyltransferase [Methanococcus maripaludis C5]
 gi|132662956|gb|ABO34602.1| SAM-dependent methyltransferase [Methanococcus maripaludis C5]
          Length = 380

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L         +L++    G F++        V AV+++  ++  A  N+  N V N   +
Sbjct: 201 LENYVKPGDKVLDICSYTGGFAVHAGIKGGEVTAVDLSDKALAVAEENMELNGVKNYNCI 260

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++ +  + M +  E            +F  + +DPP
Sbjct: 261 VSNAFDAMKEMIKNNE------------KFDVVVLDPP 286


>gi|268326005|emb|CBH39593.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
          Length = 254

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 36/74 (48%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++ ++        + +LL++ CG+G FS+  AR    V  V+++   +E A+    AN+
Sbjct: 28  EYLQQYFEFCGMAPEDNLLDVACGSGEFSIFCARKMRYVCGVDLSDRMIELAKNQATANN 87

Query: 256 VNNVKIVRMSSKEF 269
           +  ++      ++ 
Sbjct: 88  LEYIEFECHDVEDI 101


>gi|229067866|ref|ZP_04201183.1| hypothetical protein bcere0025_900 [Bacillus cereus F65185]
 gi|229176701|ref|ZP_04304105.1| hypothetical protein bcere0005_880 [Bacillus cereus 172560W]
 gi|228606744|gb|EEK64161.1| hypothetical protein bcere0005_880 [Bacillus cereus 172560W]
 gi|228715225|gb|EEL67084.1| hypothetical protein bcere0025_900 [Bacillus cereus F65185]
          Length = 213

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 68  QMPDIKGDILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 167


>gi|226309797|ref|YP_002769691.1| hypothetical protein BBR47_02100 [Brevibacillus brevis NBRC 100599]
 gi|226092745|dbj|BAH41187.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 198

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 20/101 (19%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                +L++ CG G   L  A+     RV  +++ + +V  AR N  AN + NV++    
Sbjct: 56  NSHARVLDVGCGYGPMGLTAAKLADHGRVTMIDVNERAVNLARRNAEANGIKNVEVRVSD 115

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
                                +   +F  I  +PP R+G +
Sbjct: 116 V-----------------YSGVQGEQFDVILTNPPIRAGKE 139


>gi|119896889|ref|YP_932102.1| SAM dependent methyl transferase [Azoarcus sp. BH72]
 gi|119669302|emb|CAL93215.1| probable SAM dependent methyl transferase [Azoarcus sp. BH72]
          Length = 395

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L         +L  +C  G FSL  LA   + VL+++ + P++  A  N+A N    +
Sbjct: 210 RLLTGRLARGRRVLNCFCYTGGFSLQALAGGAESVLSIDSSGPALATAARNLALN--PQL 267

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              R            E  F  L+ +      F  I +DPP+  
Sbjct: 268 DAARAD-------WWEEDVFEALRALRAEGRSFDLIVLDPPKFA 304


>gi|89073092|ref|ZP_01159631.1| putative HemK protein, Methylase of polypeptide chain release
           factors [Photobacterium sp. SKA34]
 gi|89051045|gb|EAR56502.1| putative HemK protein, Methylase of polypeptide chain release
           factors [Photobacterium sp. SKA34]
          Length = 284

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 78/239 (32%), Gaps = 42/239 (17%)

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDA 141
           L+     ++ +     P L + +     L  +    ++T    +L D+ +      L   
Sbjct: 8   LLKQTTEQLASAGSESPQLDSAVLLCHVLD-KPRSYLLTWPEKQLDDEQYNIFQQVLARR 66

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           L+                I  +R++    L V+  TLI R                ++E 
Sbjct: 67  LNGEPIAY----------IVGEREFWSLPLKVSPSTLIPRPD-----------TERLVEL 105

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
            L         +L+L  G G  +L +A  +   +V  +++ + + E A  N     + N 
Sbjct: 106 ALDKITSATSKVLDLGTGTGAIALAIASEYPSLQVTGIDLRQEAAELAHENSQRLSILNT 165

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           + +  S                      H+  F+ I  +PP   +D A   +VQ     
Sbjct: 166 RFLAGS----------------WYSPLQHNDVFELIVSNPPY--IDHADPHLVQGDVRF 206


>gi|227355361|ref|ZP_03839762.1| protein methyltransferase (protein-glutamine N-methyltransferase)
           [Proteus mirabilis ATCC 29906]
 gi|227164585|gb|EEI49456.1| protein methyltransferase (protein-glutamine N-methyltransferase)
           [Proteus mirabilis ATCC 29906]
          Length = 282

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L +A  R   RVL V+    +V  A  N     
Sbjct: 98  LVEKALEKLSAQASRILDLGTGTGAIALAIASERSDCRVLGVDFQPEAVALAIENAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++NV        EFT++              +  Y+F  I  +PP
Sbjct: 158 LSNV--------EFTESCWFS---------SLSGYQFDMIISNPP 185


>gi|108762459|ref|YP_630466.1| hypothetical protein MXAN_2245 [Myxococcus xanthus DK 1622]
 gi|108466339|gb|ABF91524.1| hypothetical protein MXAN_2245 [Myxococcus xanthus DK 1622]
          Length = 401

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 41/80 (51%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           H+L W+   TK  + +++EL CG G+ +   A+    V   +I  PSV AA+  + A  +
Sbjct: 59  HVLPWLARYTKLGKANVVELGCGTGSSTAAFAQVASHVTGYDIHAPSVRAAQSRMKALGL 118

Query: 257 NNVKIVRMSSKEFTQAMRRE 276
            NV    +   +  + +R+E
Sbjct: 119 RNVDTRVVEPAKLLEQLRQE 138


>gi|83955504|ref|ZP_00964135.1| hypothetical protein NAS141_19674 [Sulfitobacter sp. NAS-14.1]
 gi|83840148|gb|EAP79323.1| hypothetical protein NAS141_19674 [Sulfitobacter sp. NAS-14.1]
          Length = 391

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             AA       +L+++   G FSL  LA      +AV+ + P++E A+    A  V++  
Sbjct: 210 AFAANLSKGKRVLDVFAHVGGFSLAALANGASSAVAVDGSAPALELAQQGAEAMGVSDRF 269

Query: 261 IVR-MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHI 318
             R   + +   A+R E E             F  +  DPP        +   ++AY  +
Sbjct: 270 ATRQGDAFDILTALRAEGE------------EFDVVICDPPAFAPGKPALEAGLRAYERV 317

Query: 319 L 319
            
Sbjct: 318 A 318


>gi|37679116|ref|NP_933725.1| methylase of polypeptide chain release factor [Vibrio vulnificus
           YJ016]
 gi|37197858|dbj|BAC93696.1| methylase of polypeptide chain release factor [Vibrio vulnificus
           YJ016]
          Length = 291

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 70/220 (31%), Gaps = 52/220 (23%)

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D    E   +  +AL AR+   + +       I  +R++      VA  TLI R      
Sbjct: 50  DKILTEQEQQQFEALVARRLSGEPVAY-----IIGEREFWSLPFKVAPSTLIPRPD---- 100

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVE 245
                     ++E  L  T    G +L+L  G G  ++ LA       V+ V++ + +  
Sbjct: 101 -------TERLVELALEKTATQTGSILDLGTGTGAIAIALASELPHRTVMGVDLQQEAKL 153

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----- 300
            A  N  A ++ NV   + S                  +  +   +F  I  +PP     
Sbjct: 154 LAESNALALNIKNVTFKQGS----------------WFEPVVQGTKFALIVSNPPYIDEN 197

Query: 301 ---------RSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
                    R     A V        I YI        RD
Sbjct: 198 DPHLNQGDVRFEPKSALVAEESGLADIRYI----AQQARD 233


>gi|315445419|ref|YP_004078298.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
 gi|315263722|gb|ADU00464.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
          Length = 212

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 1/112 (0%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     I G +L++ CG G  +++L      VL V+ A  +VE AR+N     ++  +  
Sbjct: 35  IERAGLITGRVLDVGCGTGEHTILLTAAGYDVLGVDGAPSAVEQARHNAKTRGID-ARFD 93

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
              + +       +   +            +       R+    + V ++  
Sbjct: 94  VADALDLGDEPAYDTIIDSALFHIFDDADREKYVRSLGRATAPGSVVHLLAL 145


>gi|241664951|ref|YP_002983311.1| PUA domain-containing protein [Ralstonia pickettii 12D]
 gi|309780243|ref|ZP_07674994.1| methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|240866978|gb|ACS64639.1| PUA domain containing protein [Ralstonia pickettii 12D]
 gi|308920946|gb|EFP66592.1| methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 397

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  L      V++++ +  ++  A  N+  N  +  
Sbjct: 213 RALVGALARDRDVLNCFCYTGGFSLAALKGGARSVVSIDSSGEALAVAERNVTLNGFDPA 272

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +   + +            F  L++      +F  I +DPP+            +AY  I
Sbjct: 273 RAEWLDA----------DVFKSLRNFRAEGRQFDLIVLDPPKFAASAQQVDRAARAYKEI 322


>gi|57641720|ref|YP_184198.1| tRNA/rRNA methyltransferase [Thermococcus kodakarensis KOD1]
 gi|57160044|dbj|BAD85974.1| probable tRNA/rRNA methyltransferase [Thermococcus kodakarensis
           KOD1]
          Length = 396

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-V 259
            L         +L+++   G F++  A    D V+AV+ +  ++   + N   N V + +
Sbjct: 210 ALEKYVKPGMRVLDVFTYTGGFAIHAAVAGADEVVAVDKSPWAINMVKENAKLNGVEDKM 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           K +  S+            F  ++++     +F  + +DPP     +  + 
Sbjct: 270 KYIVGSA------------FPVMEEMIKRGEKFDIVILDPPAFVQHEKDLK 308


>gi|320103500|ref|YP_004179091.1| type 11 methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319750782|gb|ADV62542.1| Methyltransferase type 11 [Isosphaera pallida ATCC 43644]
          Length = 476

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 15/98 (15%)

Query: 212 DLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           ++L++ C  G F+L   L      V  V++ + ++  AR N   N V  V  V+  +   
Sbjct: 292 NVLDVCCYTGGFALAAKLQGGAAEVQGVDLDEKAIALARENAHLNQVR-VSFVQSDA--- 347

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                    F  L+ + ++  RF  I +DPP+   D  
Sbjct: 348 ---------FGYLRQMAVNQRRFGVIVLDPPKLIADRE 376


>gi|271964060|ref|YP_003338256.1| type 11 methyltransferase [Streptosporangium roseum DSM 43021]
 gi|270507235|gb|ACZ85513.1| methyltransferase type 11 [Streptosporangium roseum DSM 43021]
          Length = 281

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
            N+G N H+L        G +  +L++ CGNG  + + AR         ++++ P +  A
Sbjct: 31  VNSGFNDHLLAAAA---VGERDRVLDVGCGNGQVTRLAARRARLGHTTGIDLSAPMLRRA 87

Query: 248 RYNIAANHVNNVKIVRMSS 266
           R   A   V NV   R  +
Sbjct: 88  RACAADEGVANVTFERGDA 106


>gi|88604231|ref|YP_504409.1| hypothetical protein Mhun_3003 [Methanospirillum hungatei JF-1]
 gi|88189693|gb|ABD42690.1| methyltransferase [Methanospirillum hungatei JF-1]
          Length = 305

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
                 +++++ G G F++ LA+    V A +I   +V     NIA N + NV  +   +
Sbjct: 159 MNEGERVIDMFAGVGPFAIPLAKKASIVYAGDINPEAVILMVRNIARNRLTNVVPILSDA 218


>gi|118475227|ref|YP_891483.1| hypothetical protein CFF8240_0281 [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414453|gb|ABK82873.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 263

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 14/122 (11%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E+V          +L++ CG G   L LA+    VL  + +   ++  + N A   ++NV
Sbjct: 52  EFVSKIKFDKSTTVLDMGCGPGTIGLKLAKDVKNVLCCDYSDEMLKCVKSNAANLGLDNV 111

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           K          + +  E  +  L   DI          D       DA   ++      +
Sbjct: 112 K---------VKKLSFEDSWEELPKYDIIIASRCLEVSD-----AKDALTKLISKANRAV 157

Query: 320 YI 321
           YI
Sbjct: 158 YI 159


>gi|71905838|ref|YP_283425.1| SAM-dependent methyltransferase [Dechloromonas aromatica RCB]
 gi|71845459|gb|AAZ44955.1| SAM-dependent methyltransferase / 23S rRNA m(5)C-1962
           methyltransferase [Dechloromonas aromatica RCB]
          Length = 396

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 10/104 (9%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  +A     VL+++ + P++  A+ N+A N     
Sbjct: 211 RALLGQLSAGKDVLNCFCYTGGFSLQAMAGGAKSVLSIDSSGPALAQAKANLALNPQLPA 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                   +  QA+R  R+  +L         F  I +DPP+  
Sbjct: 271 DRAEWQEADVFQALRDFRKAGKL---------FDLIVLDPPKFA 305


>gi|283853961|ref|ZP_06371159.1| protein of unknown function Met10 [Desulfovibrio sp. FW1012B]
 gi|283570648|gb|EFC18710.1| protein of unknown function Met10 [Desulfovibrio sp. FW1012B]
          Length = 397

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 84/281 (29%), Gaps = 39/281 (13%)

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           G  +   + D+  +  +  D+F        AL   + AT     L          +  + 
Sbjct: 62  GSLICARIMDRDPQTVIDTDFFRSRLRDALALRERLYATPHYRLLFSEGDHVPGLVLDRY 121

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ-------LIGRANKTKICLDRDYV 167
              +V  +    +D    E    +   L  +    +       L G     +        
Sbjct: 122 GDVVVAQLTTAGMDRRREEIVAAIVAELAPKTIIFRNDATIRDLEGLPRDVETVYGT--A 179

Query: 168 DERLTVAGRTLIYRQIENS------FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
            + LT+     ++     S      F          M E      +   G  +L+L+   
Sbjct: 180 PDTLTINEDGAVFEVPALSGQKTGWFY--------DMRENRTRLCRLTPGRTVLDLFAYA 231

Query: 221 GNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRERE 278
           G FS+  A      V  ++ ++ +   AR N   N V   V  V+  +  F         
Sbjct: 232 GAFSVRAALAGASAVTCLDSSETACAMARDNATRNGVGGKVATVKADAAAF--------- 282

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHI 318
              L++       F  + +DPP        +   ++AY  +
Sbjct: 283 ---LEECAASGRTFDVVSLDPPALVKRKKDLEAGLRAYERL 320


>gi|156087955|ref|XP_001611384.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154798638|gb|EDO07816.1| conserved hypothetical protein [Babesia bovis]
          Length = 537

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 190 PNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEA 246
            N  +     E  +   K +  D  +L++  G G  SL  A+   R V+ ++     ++ 
Sbjct: 168 VNDRVRTGAYESFIRLNKSLFKDKVVLDVGSGCGILSLFAAKAGARLVVGIDNCDNMIKM 227

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +  +   N + NV+ +    ++            +  D+    ++   +  
Sbjct: 228 SENHARINGIGNVQFLHGKVEDSDLVYSGGVVQFKRDDLPCEPFKCDILIS 278


>gi|53804792|ref|YP_113524.1| hypothetical protein MCA1049 [Methylococcus capsulatus str. Bath]
 gi|53758553|gb|AAU92844.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 399

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH-V 256
           L   +AA       +L+L+   G + +  A    + V  V+ ++ ++  A  N   N   
Sbjct: 211 LNRAVAARLSKCQRVLDLFSYTGGWGVQAALGGAESVDCVDSSESALALAAENARLNGVA 270

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDATVGMVQ 313
           + +  +R    EF + +R +R+   L   D  +    +            L+ A + ++ 
Sbjct: 271 DRMGFIRQDVFEFLKQLRHKRQRYDLIVADPPALIKRKKDVKAGVEAYHRLNQAAMQVLN 330

Query: 314 AYPHILYISC 323
               ++  SC
Sbjct: 331 PGGVLVSASC 340


>gi|258593872|emb|CBE70213.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 268

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 180 YRQIENSFT-----QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
           Y QIE+ F      Q         +E ++   +   G  L+L CG G  +++LAR   RV
Sbjct: 25  YDQIEDQFYFAECYQV----YRETVERII--CEKPDGIALDLGCGTGKQTVLLARRAGRV 78

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           + ++I+   +EAAR     N   NV +V   
Sbjct: 79  VGIDISDQMIEAARQ--RCNGRPNVSLVTGD 107


>gi|198465053|ref|XP_002134903.1| GA23546 [Drosophila pseudoobscura pseudoobscura]
 gi|198149995|gb|EDY73530.1| GA23546 [Drosophila pseudoobscura pseudoobscura]
          Length = 440

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 28/245 (11%)

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDY-LTSQSDQAIVTLIYHRL 126
           K+++  + F    L +N              +L++ L + +  +TS S    +  +  R 
Sbjct: 88  KQQVTQENFSFVELELN------YENWSANEILKSVLPEEEEGMTSYSRIGHIVHLNLRD 141

Query: 127 LDDAWRECAIR-LRDALHARKYQIQLIGRANKT-------KICLDRDYVDERLTVAGRTL 178
               +++     LRD L   +  +      + T        IC + +Y  E        +
Sbjct: 142 HLLPYKQLIGEVLRDKLPNCRTVVNKASSIDNTYRNFQLELICGEAEYQVET---KENGI 198

Query: 179 IYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235
            +   E  F++   N  ++    E          GD+L +++ G G FS+  A+    VL
Sbjct: 199 PF---EFDFSKVYWNPRLST---EHERIVKLLQPGDVLYDVFAGVGPFSVPAAKKRCHVL 252

Query: 236 AVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           A ++   S    ++N   N  ++N+K+     +EF     R     RL+  D  SY    
Sbjct: 253 ANDLNPVSFHWLQHNAKRNKCLSNIKMSNKDGREFILKELRADLLQRLRLTDTSSYATHI 312

Query: 295 IFVDP 299
               P
Sbjct: 313 TMNLP 317


>gi|197284959|ref|YP_002150831.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Proteus mirabilis HI4320]
 gi|194682446|emb|CAR42348.1| protein methyltransferase (protein-glutamine N-methyltransferase)
           [Proteus mirabilis HI4320]
          Length = 282

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L +A  R   RVL V+    +V  A  N     
Sbjct: 98  LVEKALEKLSAQASRILDLGTGTGAIALAIASERSDCRVLGVDFQPEAVALAIENAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++NV        EFT++              +  Y+F  I  +PP
Sbjct: 158 LSNV--------EFTESCWFS---------SLSGYQFDMIISNPP 185


>gi|56460001|ref|YP_155282.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Idiomarina loihiensis L2TR]
 gi|56179011|gb|AAV81733.1| Modification methylase, HemK family [Idiomarina loihiensis L2TR]
          Length = 309

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 78/192 (40%), Gaps = 25/192 (13%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           RA L  +  LT+    A+    + R+L+   +E    L+  +        L  +A    +
Sbjct: 46  RALLSFVLQLTTAQLAAM---GHCRMLNSEKQEFVELLKQRVEQHIPAAYLTHQAWFAGL 102

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
                YVDER+ V  R+ I   IEN F Q           W++ A       +L+L  G 
Sbjct: 103 PF---YVDERVLV-PRSPIAELIENGF-QT----------WLVEAPH----RVLDLCTGG 143

Query: 221 GNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRER 277
           G  ++  A  F    V A++I+  ++E A +NI  + + + V  ++    +  +A + + 
Sbjct: 144 GCIAIACAYAFPEAEVDALDISTEALEVAEFNIEQHGLTHRVTPIQSDLFDAVKAEKYDL 203

Query: 278 EFNRLKDIDIHS 289
                  +D   
Sbjct: 204 IVTNPPYVDAED 215


>gi|15790204|ref|NP_280028.1| hypothetical protein VNG1117C [Halobacterium sp. NRC-1]
 gi|169235933|ref|YP_001689133.1| hypothetical protein OE2614F [Halobacterium salinarum R1]
 gi|10580660|gb|AAG19508.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726999|emb|CAP13785.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 327

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFT 270
            + +++ G G +++ +A    RV+A ++ + +++  + N A N   + V  V    +E  
Sbjct: 177 HVFDMFAGVGPYAVPMASAGARVVATDVNETAIDYLQANAARNGVADRVTGVAGDVREVA 236


>gi|333027280|ref|ZP_08455344.1| putative methyltransferase [Streptomyces sp. Tu6071]
 gi|332747132|gb|EGJ77573.1| putative methyltransferase [Streptomyces sp. Tu6071]
          Length = 232

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 192 AGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
              + H+L   L     G    +L+L  G+G  +L+ AR   RV A +++  +V +AR N
Sbjct: 23  PQADTHLLARALGTEPIGPHTHVLDLCTGSGALALLAARRGARVCATDLSWRAVVSARIN 82

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            A      V+++R       +  R +        +    Y         PR G   A   
Sbjct: 83  AARAG-QRVRVLRGDLSGPVRGQRFDLV------VSNPPYVPDPAARTGPRRGRSHAASL 135

Query: 311 MVQAYP 316
              A P
Sbjct: 136 AWDAGP 141


>gi|300723055|ref|YP_003712353.1| N5-glutamine methyltransferase [Xenorhabdus nematophila ATCC 19061]
 gi|297629570|emb|CBJ90173.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Xenorhabdus nematophila ATCC 19061]
          Length = 286

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L LA  RH   V  V+I   +V  A+ N   N 
Sbjct: 98  LVEKALELLPDSPAQILDLGTGTGAIALALASERHDCHVTGVDINPDAVALAKRNAERN- 156

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               + +      F Q+       +R         +F  I  +PP
Sbjct: 157 ---TEKLPFHYVNFLQSEWFAEVGHR---------QFDMIVSNPP 189


>gi|149540272|ref|XP_001517753.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus]
          Length = 421

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 97/279 (34%), Gaps = 24/279 (8%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSE--PIHYRMRAEFHIWHDGDDLYHIMFDQQTK 68
           +QQL +K  R++++        L +        H +   E  +    +    +   Q   
Sbjct: 34  KQQLLDKRHRVKKL--PGGTVALPVVEETFIEQHLQ---ELKMHVAPESTCVLARIQNPL 88

Query: 69  ERMRIDYFMPGSLLINALMIEM-----MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
              R     P   L +A+   +       +  LE  L     +   L   S+ +    ++
Sbjct: 89  LSKRAQLRSPAQKLRSAVRCLVEGRGVPWSAGLERDLPRAWQRHGDLLLVSEDSFRAPLW 148

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRAN-KTKICLDRDYVDERLTVAGRTLIYRQ 182
             L  + W   A  L     A++ ++   G    +  + L  D   E +    R   +  
Sbjct: 149 EELGQELWETVAAALGVRRLAKRGRVAPGGTRTPRVTLLLGDDGWVEHVDDGIR-YTFDV 207

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD--RVLAVEI 239
            +  F   N      + E +  A+    G++L +LY G G F+L    H     V A E 
Sbjct: 208 TQCMFCPGN------VTEKLRVASLPCAGEVLVDLYAGIGYFTLPFLVHAGVAFVHACEW 261

Query: 240 AKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRRER 277
              +V A R N+  N   +  +I    +++     R +R
Sbjct: 262 NPHAVAALRRNLELNGVADRCQIHAGDNRKLDLEDRADR 300


>gi|110834447|ref|YP_693306.1| hypothetical protein ABO_1586 [Alcanivorax borkumensis SK2]
 gi|123050454|sp|Q0VP64|RSMC_ALCBS RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|110647558|emb|CAL17034.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 325

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 34/63 (53%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +L+ +     G  G ++++ CG G  S+ LARH  +V  V+++  +V A+  ++A N 
Sbjct: 173 ALLLQAMEGHNLGKPGKVIDMGCGAGVISVWLARHGWQVQGVDVSASAVTASTESLARNG 232

Query: 256 VNN 258
           +  
Sbjct: 233 LQG 235


>gi|54309372|ref|YP_130392.1| putative SAM-dependent methyltransferase [Photobacterium profundum
           SS9]
 gi|46913808|emb|CAG20590.1| putative SAM-dependent methyltransferase [Photobacterium profundum
           SS9]
          Length = 418

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSK 267
             +L  +C  G F L  L     +V+ V++++P+++ AR N  AN +   N + V     
Sbjct: 244 KRVLNCFCYTGGFGLYALKGGASQVVNVDVSQPALDTARLNTEANGLPVENAEFVNADVF 303

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +  +  R   EF            F  + +DPP+        VG  + Y  I
Sbjct: 304 KLLREYRERGEF------------FDVVIMDPPKFAESKSQLVGACRGYKDI 343


>gi|332305937|ref|YP_004433788.1| Methyltransferase type 12 [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173266|gb|AEE22520.1| Methyltransferase type 12 [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 417

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 201 WVLAATKGIQG-DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN 257
           W+           +L++ C  G+ +L LA+HF   +V+AV++A+PS+  A    A+  + 
Sbjct: 191 WLKTQHPDFSPKRILDIGCTVGHNALPLAQHFPDAQVIAVDVARPSLRYAHARAASLGIE 250

Query: 258 NVKIVRMSSKEFTQ 271
           N++ V+ +++E +Q
Sbjct: 251 NIQFVQANAEELSQ 264


>gi|302537160|ref|ZP_07289502.1| RsmD family RNA methyltransferase [Streptomyces sp. C]
 gi|302446055|gb|EFL17871.1| RsmD family RNA methyltransferase [Streptomyces sp. C]
          Length = 192

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 18/120 (15%)

Query: 198 MLEWVLAATKGIQG----DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           M E + +  + + G     +L+LY G+G   L  L+R     L VE    + +A R NI 
Sbjct: 29  MREGLFSTWESLHGVDGSRVLDLYGGSGAVGLEALSRGAAHTLLVEADAKAAKAIRDNIK 88

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           A  +   +     +++   A                   +  +F+DPP +        ++
Sbjct: 89  ALGLPGAEFRAGKAEQIVAA-------------AASGDPYDIVFLDPPYAVEHADLGEIL 135


>gi|15605803|ref|NP_213180.1| hypothetical protein aq_262 [Aquifex aeolicus VF5]
 gi|2982969|gb|AAC06583.1| putative protein [Aquifex aeolicus VF5]
          Length = 189

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 2/119 (1%)

Query: 199 LEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +E  L A    + ++  +L CG G F+L LA+   +V AV++ +  +E          + 
Sbjct: 24  VEVFLKAVNPSENEVWVDLGCGPGYFTLPLAKRVKKVYAVDLEEKMLEVCEMRAREEGIE 83

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           N++ V+   ++         +   + ++     + K    +  R     A + ++  +P
Sbjct: 84  NIEFVKCE-EDRIPLPDEIADGVLMANLIHELIKPKEFLSEVKRISKPAAKIVVIDWHP 141


>gi|300692286|ref|YP_003753281.1| protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           PSI07]
 gi|299079346|emb|CBJ52018.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           PSI07]
          Length = 246

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         D+LE+  G+G  + +LA     V  V+IA   V  AR N+
Sbjct: 93  PRVEARVLQELAVRKHE---DVLEVGAGSGYMAALLAHRGRHVTTVDIASELVAFARDNL 149

Query: 252 AANHVNNVKIVRMSSKE 268
           A N V NV +    + +
Sbjct: 150 ARNGVTNVDVAEGDAAQ 166


>gi|311245620|ref|XP_003121896.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Sus scrofa]
          Length = 499

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 100/272 (36%), Gaps = 21/272 (7%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + +F   +  KE + I   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 143 YKIFTSDSFEKEELSILKQLNVSPQISKYNLELTYENFKSEEILRAVLPEGQDVTS--GF 200

Query: 117 AIVTLIYHRLLDDAWRECAIRL----RDALHARKYQIQLIGRANKTKICLDRD--YVDER 170
           + V  I H  L D        +     D        +  I   + T      +    +E 
Sbjct: 201 SRVGHIAHLNLRDHQLPYKHLIGQVTIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEEN 260

Query: 171 LTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVL 227
           +    R   Y   E  F++   N  ++    E          GD+L +++ G G F++  
Sbjct: 261 MMTKVRENNYTY-EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAIPA 316

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
           A+    V A ++   S +   +N   N V+  VK+  +  K+F Q   RE    +L  + 
Sbjct: 317 AKKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGKDFLQGPVREELMQQLGLLS 376

Query: 287 IHSYRFKTIFVDPPRSGLDD--ATVGMVQAYP 316
                   I ++ P   ++   A   ++   P
Sbjct: 377 KERKHSVHIVMNLPAKAVEFLCAFKSLLDGQP 408


>gi|9955209|pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
          Length = 194

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 15/112 (13%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
               D+L+L CG G   + LA         +I + +++ A+ NI  N+++N   +R+   
Sbjct: 51  DKDDDILDLGCGYGVIGIALADEVKSTTXADINRRAIKLAKENIKLNNLDNYD-IRVVHS 109

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +  +              ++   ++  I  +PP     +    +++    +L
Sbjct: 110 DLYE--------------NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELL 147


>gi|254172039|ref|ZP_04878715.1| Met-10+ like protein [Thermococcus sp. AM4]
 gi|214033935|gb|EEB74761.1| Met-10+ like protein [Thermococcus sp. AM4]
          Length = 331

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 33/73 (45%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +++ G G +S++LAR    V AV++   ++     NI  N V NV  +    ++    
Sbjct: 185 VFDMFAGVGPYSILLARKAKLVFAVDLNPWAIRYLEENIRLNKVYNVVPILGDVRKVAGK 244

Query: 273 MRREREFNRLKDI 285
           +  +R    L   
Sbjct: 245 LMADRVIMNLPKF 257


>gi|315041851|ref|XP_003170302.1| Crg1p [Arthroderma gypseum CBS 118893]
 gi|311345336|gb|EFR04539.1| Crg1p [Arthroderma gypseum CBS 118893]
          Length = 294

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           T A     Y     SF          + + + +  +G     ++L CG+G  S  LA  F
Sbjct: 3   TFASNNFSYTAYA-SFR---PEYPQKLYDMIFSYHQGEYNTCVDLGCGHGLVSRALAPKF 58

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +V  ++ +   +E A  N+      NV+ V+ +++  
Sbjct: 59  KKVHGIDPSAGMIEQA-KNLT--QEQNVEFVQAAAESL 93


>gi|156326678|ref|XP_001618669.1| hypothetical protein NEMVEDRAFT_v1g224919 [Nematostella vectensis]
 gi|156199778|gb|EDO26569.1| predicted protein [Nematostella vectensis]
          Length = 244

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 59/182 (32%), Gaps = 30/182 (16%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W E  +        +   ++         I   + +    L VA  TLI R         
Sbjct: 41  WPERELDAPQLERYQAAIVRRQAGEPVAYILGQQGFWSLELEVAAHTLIPRPD------- 93

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
                  ++E VLA        LL+L  G G  +L LA  R   R+  V+    +V  A 
Sbjct: 94  ----TELLVETVLALLPATSAALLDLGTGTGAIALALASERPAWRLTGVDRVSEAVALAE 149

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N A   ++N                    F+ L       +RF+ I  +PP    DD  
Sbjct: 150 RNRARLKLSNANFA------------ESHWFSVL-----VGHRFQLIVSNPPYIAADDRH 192

Query: 309 VG 310
           + 
Sbjct: 193 LA 194


>gi|153003698|ref|YP_001378023.1| methyltransferase small [Anaeromyxobacter sp. Fw109-5]
 gi|152027271|gb|ABS25039.1| methyltransferase small [Anaeromyxobacter sp. Fw109-5]
          Length = 414

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV- 256
           ++    A        ++E+  G G  +LVLAR   RV+A ++   +V  AR N A   + 
Sbjct: 222 LVASAAAEWPVAGKRVIEVGTGTGVLALVLARAGARVIATDVEPAAVACARENAARLGLA 281

Query: 257 NNVKIVRMS 265
             V++VR  
Sbjct: 282 ERVEVVRAD 290


>gi|312383152|gb|EFR28345.1| hypothetical protein AND_03887 [Anopheles darlingi]
          Length = 500

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
           +GDLL +LY G G F++  A+    V+A ++   S  A   N   N V  NVK   M + 
Sbjct: 224 EGDLLYDLYAGVGPFTVPAAKRGCTVIANDLNPDSYSALVINCGLNKVMRNVKCYNMDAV 283

Query: 268 EFTQAMRREREFNRLKDIDIHS 289
           +F +   R     +L D     
Sbjct: 284 DFIKVELRNDLLAKLADDKFQG 305


>gi|260494287|ref|ZP_05814418.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Fusobacterium sp. 3_1_33]
 gi|260198433|gb|EEW95949.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Fusobacterium sp. 3_1_33]
          Length = 383

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 32/160 (20%)

Query: 163 DRDYVDERLTV---AGRTLIYRQIENSF----TQPNAGI------NVHMLEWVLAATKGI 209
           D+D + E L +     + L Y   E  F     + N G+         ++E  +   + +
Sbjct: 135 DKDKIREMLVLRAKKRKPLQYILGEWEFYGLPFKVNEGVLIPRADTEILVEQCIQLMREV 194

Query: 210 Q-GDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +  ++L++  G+G  S+ +A       V  ++I + ++E A  N   N + NV  +    
Sbjct: 195 EEPNILDIGSGSGAISIAIANELKSSSVTGIDINEKAIELAIENKTLNKIENVNFI---- 250

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                      E N  + +D   +++  I  +PP    ++
Sbjct: 251 -----------ESNLFEKLD-KDFKYDLIVSNPPYISKEE 278


>gi|331084302|ref|ZP_08333407.1| hypothetical protein HMPREF0992_02331 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401837|gb|EGG81414.1| hypothetical protein HMPREF0992_02331 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 190

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           P    N  + +            +L++ CG G FSL LA+   +V   +++   + AA+ 
Sbjct: 38  PTPEENPFLKQVYEEMQIDEHTRILDIGCGAGRFSLALAKSGAQVTGTDVSSEMIMAAKE 97

Query: 250 NIAANHVNNVKIVRMS 265
                H+ NV      
Sbjct: 98  LAEKEHLENVSFFHAD 113


>gi|291612617|ref|YP_003522774.1| hypothetical protein Slit_0145 [Sideroxydans lithotrophicus ES-1]
 gi|291582729|gb|ADE10387.1| protein of unknown function Met10 [Sideroxydans lithotrophicus
           ES-1]
          Length = 447

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L  T     D+L  +C  G FSL  L      VL+++ ++ +++ A+ N+  N ++  
Sbjct: 262 RALTGTLAAGRDVLNCFCYTGGFSLYALRGGAKSVLSIDSSQEALQLAQTNVQLNALDAA 321

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           K     + +   A+R+ R+ NR         +F  I +DPP+     A   
Sbjct: 322 KAEWQCA-DVFDALRKLRDQNR---------KFDLIVLDPPKFAPTAAFAE 362


>gi|224493316|sp|Q6LQ36|RLMI_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
          Length = 397

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSK 267
             +L  +C  G F L  L     +V+ V++++P+++ AR N  AN +   N + V     
Sbjct: 223 KRVLNCFCYTGGFGLYALKGGASQVVNVDVSQPALDTARLNTEANGLPVENAEFVNADVF 282

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +  +  R   EF            F  + +DPP+        VG  + Y  I
Sbjct: 283 KLLREYRERGEF------------FDVVIMDPPKFAESKSQLVGACRGYKDI 322


>gi|159899439|ref|YP_001545686.1| DNA methylase N-4/N-6 domain-containing protein [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892478|gb|ABX05558.1| DNA methylase N-4/N-6 domain protein [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 309

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            +L  ++       G +L+ + G G   L  A+   + + +E++   ++       A ++
Sbjct: 83  ALLSEIIRFFTKPNGWVLDPFAGVGGTLLACAQTQRQAIGIELSPHYIDLYGQAADALNL 142

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             + +++  ++E             L    I   RF  +  DPP
Sbjct: 143 ARLPVLQGDAREV------------LNSPSIQQQRFDLVLTDPP 174


>gi|147921607|ref|YP_684576.1| N6 adenine-specific DNA methyltransferase [uncultured methanogenic
           archaeon RC-I]
 gi|110619972|emb|CAJ35250.1| predicted N6 adenine-specific DNA methyltransferase [uncultured
           methanogenic archaeon RC-I]
          Length = 225

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 21/141 (14%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL---VLARHFD-----RVLAVEIAKPS 243
           A +   +L +       + G +++L CG G  ++   +L          +V+ ++    +
Sbjct: 30  AVVAADLLYFAF-MNGDLDGSVIDLGCGTGILAIGARLLKDDAGMDSTQKVIGIDSDIRA 88

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--- 300
           +E A+ N  +    +V  V    ++             +  +     RF T+ ++PP   
Sbjct: 89  LEVAKANAESLG-TDVDWVHCDVRDV-------NNIPEIAVVLNAGSRFDTVVMNPPFGA 140

Query: 301 -RSGLDDATVGMVQAYPHILY 320
              G D   +        ++Y
Sbjct: 141 QEKGNDRPFLDKALEIGRVVY 161


>gi|145596403|ref|YP_001160700.1| methyltransferase small [Salinispora tropica CNB-440]
 gi|145305740|gb|ABP56322.1| 16S rRNA m(2)G 1207 methyltransferase [Salinispora tropica CNB-440]
          Length = 201

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +L           G LL+L CG G  + VLA       V AV++ + + E    N A
Sbjct: 47  TAVLLRKAELPAPDSTGHLLDLGCGFGPITCVLATSVPSATVWAVDVNERARELTTANAA 106

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                    V                     D    +  F  I+ +PP R G ++    +
Sbjct: 107 RVGAAGRVRVA------------------PPDAVPAAVTFDQIWSNPPIRIGKNELHQLL 148

Query: 312 VQAYPHIL 319
           ++  P + 
Sbjct: 149 LRWLPRLA 156


>gi|71909548|ref|YP_287135.1| ribosomal protein L11 methyltransferase [Dechloromonas aromatica
           RCB]
 gi|123626321|sp|Q478R6|PRMA_DECAR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|71849169|gb|AAZ48665.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Dechloromonas aromatica RCB]
          Length = 296

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L         +L+  CG+G  ++  AR     V  V+I   +VEAAR N   N V 
Sbjct: 155 LEW-LERNVSEACTVLDYGCGSGILAIAAARLGAGHVAGVDIDPQAVEAARANAERNGVT 213


>gi|83746208|ref|ZP_00943262.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           UW551]
 gi|83727174|gb|EAP74298.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           UW551]
          Length = 246

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         D+LE+  G+G  + +LA     V  V+IA   V  AR N+
Sbjct: 93  PRVEARVLQELAVRKHE---DVLEVGAGSGYMAALLAHRGRHVTTVDIAPELVAFARDNL 149

Query: 252 AANHVNNVKIVRMSSK 267
           A N V N  +   ++ 
Sbjct: 150 ARNGVTNADVAEGNAA 165


>gi|116624278|ref|YP_826434.1| type 11 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227440|gb|ABJ86149.1| Methyltransferase type 11 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 307

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            +L+L  G+G  ++ LA+    V+ ++IA   VEA     A   +N VK     +
Sbjct: 75  RILDLGSGDGTTAIPLAQMGAEVVGIDIASNLVEAGNKRAAEAGLNRVKFQEGDA 129


>gi|311245614|ref|XP_003121894.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Sus scrofa]
          Length = 499

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/272 (19%), Positives = 100/272 (36%), Gaps = 21/272 (7%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + +F   +  KE + I   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 143 YKIFTSDSFEKEELSILKQLNVSPQISKYNLELTYENFKSEEILRAVLPEGQDVTS--GF 200

Query: 117 AIVTLIYHRLLDDAWRECAIRL----RDALHARKYQIQLIGRANKTKICLDRD--YVDER 170
           + V  I H  L D        +     D        +  I   + T      +    +E 
Sbjct: 201 SRVGHIAHLNLRDHQLPYKHLIGQVTIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEEN 260

Query: 171 LTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVL 227
           +    R   Y   E  F++   N  ++    E          GD+L +++ G G F++  
Sbjct: 261 MMTKVRENNYTY-EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAIPA 316

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
           A+    V A ++   S +   +N   N V+  VK+  +  K+F Q   RE    +L  + 
Sbjct: 317 AKKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGKDFLQGPVREELMQQLGLLS 376

Query: 287 IHSYRFKTIFVDPPRSGLDD--ATVGMVQAYP 316
                   I ++ P   ++   A   ++   P
Sbjct: 377 KERKHSVHIVMNLPAKAVEFLCAFKSLLDGQP 408


>gi|291301387|ref|YP_003512665.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290570607|gb|ADD43572.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 243

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            + A   ++G +L++ CG G  +L LA    RV  V+I+  ++E AR   A   V  V  
Sbjct: 48  AVEAAGQVRGTVLDVGCGLGENALFLAGRGYRVTGVDISPTALEQARQRAADKGVE-VDF 106

Query: 262 VRMSSKEFT 270
           V   +    
Sbjct: 107 VVGDATRLA 115


>gi|256004628|ref|ZP_05429605.1| putative RNA methylase [Clostridium thermocellum DSM 2360]
 gi|255991363|gb|EEU01468.1| putative RNA methylase [Clostridium thermocellum DSM 2360]
 gi|316941278|gb|ADU75312.1| SAM-dependent methyltransferase [Clostridium thermocellum DSM 1313]
          Length = 409

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 14/123 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G+F L  A    + V  V+I++ +++ A+ N   N ++
Sbjct: 223 YNRAAVARIANGKRVLDCFTHTGSFGLNAALGGAEHVTCVDISQSAIDMAKANAVRNGLD 282

Query: 258 N-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAY 315
             +  V     +    +  +             + +  I +DPP       TV    + Y
Sbjct: 283 GKMDFVCEDVFDLLTKLAEQ-----------KCHDYDYIILDPPAFTKSRKTVQSAARGY 331

Query: 316 PHI 318
             I
Sbjct: 332 KEI 334


>gi|226364497|ref|YP_002782279.1| hypothetical protein ROP_50870 [Rhodococcus opacus B4]
 gi|226242986|dbj|BAH53334.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 202

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E ++       G++L++ CG G+ ++ +AR   +V  ++  + +++ AR       V+ 
Sbjct: 32  IETLIDPFDAPPGEVLDIGCGTGDHAIEMARRGWQVTGIDTVQLALDKARSKARKAGVD- 90

Query: 259 VKIVRMSSKEFTQAMRR 275
           V+ +   + +   A+ R
Sbjct: 91  VRFMHADATDLEHAVGR 107


>gi|299067764|emb|CBJ38974.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           CMR15]
          Length = 216

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         D+LE+  G+G  + +LA     V  V+IA      AR N+
Sbjct: 63  PRVEARVLQELAVRKHE---DVLEVGAGSGYMAALLAHRGRHVTTVDIAPELAAFARDNL 119

Query: 252 AANHVNNVKIVRMSSKE 268
           A N V NV +V+  + +
Sbjct: 120 ARNGVTNVDVVQGDAGQ 136


>gi|91772960|ref|YP_565652.1| methyltransferase [Methanococcoides burtonii DSM 6242]
 gi|91711975|gb|ABE51902.1| tRNA (guanine-N(1)-)-methyltransferase [Methanococcoides burtonii
           DSM 6242]
          Length = 331

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 33/58 (56%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++++ G G +S+ +A+    V+A++    ++   + N+  N V+N++++   + E  
Sbjct: 184 VVDMFAGVGPYSIPIAKKCKMVIAMDKNPDAIHFLKENVILNSVDNIEVIEGDANEIV 241


>gi|255607375|ref|XP_002538718.1| methyltransferase, putative [Ricinus communis]
 gi|223510766|gb|EEF23665.1| methyltransferase, putative [Ricinus communis]
          Length = 206

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           W  A     +G LLEL  G+G  +L+ AR   R    +I   +V +A+ N A N +    
Sbjct: 25  WWAAHLDEARGSLLELGAGSGALTLLAARQGWRATGADIDGAAVSSAQENAARNGIE--- 81

Query: 261 IVRMSSKEFTQAMRRER 277
                  +  +A + ER
Sbjct: 82  -AEFRQSDLFEAFKGER 97


>gi|14520947|ref|NP_126422.1| hypothetical protein PAB0505 [Pyrococcus abyssi GE5]
 gi|74547078|sp|Q9V0Q0|TRM5B_PYRAB RecName: Full=tRNA (guanine-N(1)-)-methyltransferase Trm5b;
           AltName: Full=M1G-methyltransferase; AltName: Full=tRNA
           [GM37] methyltransferase
 gi|5458164|emb|CAB49653.1| Hypothetical protein, Met-10+ like protein [Pyrococcus abyssi GE5]
          Length = 330

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E +       +G+++ +++ G G FS++LA+  + V A +I   +++    NI  N VNN
Sbjct: 172 ERMRVFKMAQEGEVVFDMFAGVGPFSILLAKKAELVFACDINPWAIKYLEENIKLNKVNN 231

Query: 259 VKIVRMSSKEF 269
           V  +   S+E 
Sbjct: 232 VVPILGDSREI 242


>gi|302538112|ref|ZP_07290454.1| methyltransferase [Streptomyces sp. C]
 gi|302447007|gb|EFL18823.1| methyltransferase [Streptomyces sp. C]
          Length = 248

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             G  L+L CG G  +L LA     V AV+++  +V  A           V+  R  +  
Sbjct: 66  RPGRALDLGCGPGRNALHLASLGFEVDAVDLSPTAVAWAEERARETGATGVRFHRGDAFR 125

Query: 269 FTQA 272
            T A
Sbjct: 126 LTTA 129


>gi|261334706|emb|CBH17700.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative,pseudogene
           [Trypanosoma brucei gambiense DAL972]
          Length = 251

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMS 265
           +G  L+L+CG G  ++ LA+ F++V+AV+I   ++EAA+ N     V   V  +   
Sbjct: 61  KGCCLDLFCGCGGDTVQLAQVFEKVIAVDIDPDAIEAAKKNAEVYGVSTRVTFLCAD 117


>gi|29829212|ref|NP_823846.1| RNA methylase [Streptomyces avermitilis MA-4680]
 gi|29606318|dbj|BAC70381.1| putative RNA methylase [Streptomyces avermitilis MA-4680]
          Length = 195

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 15/114 (13%)

Query: 201 WVLAATKGIQGD-LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           W       + G+ +L+LY G+G   L  L+R     L VE    +V   R N+ +  +  
Sbjct: 37  WQALLGGPLDGERVLDLYAGSGAVGLEALSRGAGHTLLVEADTRAVRTVRENVKSLGLPG 96

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            ++    +++  Q                 +  +  +F+DPP +  DD    ++
Sbjct: 97  AEVRAGKAEQIVQT-------------PASADPYDIVFLDPPYAVSDDDLREIL 137


>gi|14520742|ref|NP_126217.1| hypothetical protein PAB0359 [Pyrococcus abyssi GE5]
 gi|5457958|emb|CAB49448.1| Ribosomal RNA small subunit methyltransferase C (rRNA
           (guanine-n2-)-methyltransferase) (16S rRNA M2G1207
           methyltransferase) [Pyrococcus abyssi GE5]
          Length = 195

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 17/109 (15%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               +L+L CG G   +V +R  + V+  +I K +V+ AR NI  N V N ++   +  E
Sbjct: 56  PDWKILDLGCGYGVIGIVASRFVNYVVMTDINKRAVQIARKNIKINGVKNAEVRLGNLYE 115

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                             +   +F +I  +PP     D    +V   P+
Sbjct: 116 -----------------PVEGEKFHSIITNPPVHAGKDILREIVINAPN 147


>gi|296227242|ref|XP_002759290.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog
           [Callithrix jacchus]
          Length = 448

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 69/200 (34%), Gaps = 16/200 (8%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 108 CVEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETIA 165

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G    T   L  D+        G    +   +   SF      
Sbjct: 166 SALGVQRLAKRGRVSPDGTRTPTVTLLLGDHGWVEHVDNGIHYKFDVTQCMFSF------ 219

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 220 --GNITEKLRMASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 277

Query: 251 IAANH-VNNVKIVRMSSKEF 269
           +  N   +  +I    +++ 
Sbjct: 278 LEINGVADRCQIHFGDNRKL 297


>gi|293553328|ref|ZP_06673964.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1039]
 gi|291602552|gb|EFF32768.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1039]
          Length = 279

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 38/183 (20%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLI 179
           L +   +++   E   RL       +  ++L+   +  +  L   D+ D RL V   TLI
Sbjct: 40  LDWLLHMNEEISEEEQRL------IETDLRLLLADHPPQYLLGYADFYDHRLKVTEATLI 93

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAV 237
            R                ++EW L  T  +  +++++  G G  ++ L  AR    V AV
Sbjct: 94  PRPE-----------TEELVEWCLDETPDVPLEVIDIGTGTGAIAISLKAARRNWHVSAV 142

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           ++++ ++E A+ N        +      +                    +   +F  I  
Sbjct: 143 DLSEEALEVAKENAQKEGTK-ISFYHGDTL-----------------GPVMDQQFDVIIS 184

Query: 298 DPP 300
           +PP
Sbjct: 185 NPP 187


>gi|254000221|ref|YP_003052284.1| HemK family modification methylase [Methylovorus sp. SIP3-4]
 gi|253986900|gb|ACT51757.1| modification methylase, HemK family [Methylovorus sp. SIP3-4]
          Length = 297

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 23/157 (14%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYC 218
           I  +R++   RL V+  TLI R                ++E  LA        ++L+L  
Sbjct: 78  ILGNREFFGLRLAVSPATLIPRPD-----------TETLVEAALARIPSEDTREVLDLGT 126

Query: 219 GNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           G G  +L +A H    RV+ V+ +  +++ AR N  A  +         ++  T  + + 
Sbjct: 127 GTGAIALAIAAHRPKSRVIGVDASAAALQVARQNAEALGL-------AITEPDTHGITKG 179

Query: 277 REFNRLKDI--DIHSYRFKTIFVDPPRSGLDDATVGM 311
               RL      +   +F  I  +PP    DD  +  
Sbjct: 180 NVEFRLGSWFTPLAGLKFDVIVSNPPYIRKDDPHLQQ 216


>gi|240102982|ref|YP_002959291.1| Met-10 like-protein, putative SAM-dependent methyltransferase
           [Thermococcus gammatolerans EJ3]
 gi|239910536|gb|ACS33427.1| Met-10 like-protein, putative SAM-dependent methyltransferase
           [Thermococcus gammatolerans EJ3]
          Length = 331

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 33/73 (45%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +++ G G +S++LAR    V A ++   ++     NI  N  +N+  +    ++    
Sbjct: 185 VFDMFAGVGPYSILLARKAKLVFACDLNPWAIRYLEENIRLNKAHNLVPILGDVRKVAGK 244

Query: 273 MRREREFNRLKDI 285
           ++ +R    L   
Sbjct: 245 LKADRVIMNLPKF 257


>gi|269956054|ref|YP_003325843.1| methyltransferase small [Xylanimonas cellulosilytica DSM 15894]
 gi|269304735|gb|ACZ30285.1| methyltransferase small [Xylanimonas cellulosilytica DSM 15894]
          Length = 210

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 21/111 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
               G+LL+L CG G  +L LA       V AV++++ +++  R N     + NV+    
Sbjct: 62  PPSAGNLLDLGCGWGPIALTLATRSPGATVWAVDVSERALDLTRRNAERLGLANVRTAT- 120

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                              D      RF  I+ +PP     D   GM++ +
Sbjct: 121 ------------------PDAVPADVRFSAIWSNPPIRVGKDVLHGMLRTW 153


>gi|125544200|gb|EAY90339.1| hypothetical protein OsI_11916 [Oryza sativa Indica Group]
          Length = 690

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            G +++ + G G  ++  A     V+A++I    ++ A++N     V +++  VR     
Sbjct: 512 AGIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQHNATVYGVHDHIDFVRGDFIH 571

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKT 294
               ++ E  F           +   
Sbjct: 572 VAPRLKGETVFMSPPWGGPDYAKVDV 597


>gi|115453397|ref|NP_001050299.1| Os03g0396900 [Oryza sativa Japonica Group]
 gi|14029021|gb|AAK52562.1|AC079853_15 Unknown protein [Oryza sativa Japonica Group]
 gi|108708634|gb|ABF96429.1| WW domain-containing protein, putative, expressed [Oryza sativa
           Japonica Group]
 gi|113548770|dbj|BAF12213.1| Os03g0396900 [Oryza sativa Japonica Group]
 gi|215737194|dbj|BAG96123.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625074|gb|EEE59206.1| hypothetical protein OsJ_11156 [Oryza sativa Japonica Group]
          Length = 690

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            G +++ + G G  ++  A     V+A++I    ++ A++N     V +++  VR     
Sbjct: 512 AGIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQHNATVYGVHDHIDFVRGDFIH 571

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKT 294
               ++ E  F           +   
Sbjct: 572 VAPRLKGETVFMSPPWGGPDYAKVDV 597


>gi|328708016|ref|XP_003243572.1| PREDICTED: hypothetical protein LOC100573483 isoform 2
           [Acyrthosiphon pisum]
          Length = 407

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF      +  + +             +L+ +CG G   + LA+   RVLA +I    + 
Sbjct: 230 SFYSVCPEVLSYHIAKRCKNNI-----VLDPFCGAGGNIIQLAKTCKRVLACDIDPNKIR 284

Query: 246 AARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF 279
            AR+N     V + +  V     +    +R +  F
Sbjct: 285 LARHNAEIYGVAHKIDFVVGDIFQIYPKLRADVVF 319


>gi|328708014|ref|XP_003243571.1| PREDICTED: hypothetical protein LOC100573483 isoform 1
           [Acyrthosiphon pisum]
          Length = 445

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           SF      +  + +             +L+ +CG G   + LA+   RVLA +I    + 
Sbjct: 268 SFYSVCPEVLSYHIAKRCKNNI-----VLDPFCGAGGNIIQLAKTCKRVLACDIDPNKIR 322

Query: 246 AARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF 279
            AR+N     V + +  V     +    +R +  F
Sbjct: 323 LARHNAEIYGVAHKIDFVVGDIFQIYPKLRADVVF 357


>gi|89094906|ref|ZP_01167838.1| Methylase of polypeptide chain release factor [Oceanospirillum sp.
           MED92]
 gi|89080863|gb|EAR60103.1| Methylase of polypeptide chain release factor [Oceanospirillum sp.
           MED92]
          Length = 283

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 33/205 (16%)

Query: 100 LRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR-DALHARKYQIQLIGRANKT 158
           L  KL  I        Q ++  +  +     +      L+     + +  +Q   +    
Sbjct: 9   LSEKLAAISDSPQLDMQYLLCHVLDKPESYLFTWPERELQPGEQESLEQLLQRRLKGEPV 68

Query: 159 KICLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
              +  R +    L V+  TLI R                ++E  L         +++L 
Sbjct: 69  AHIIGKRGFWSFELEVSPHTLIPRPD-----------TEVLVEKALELCSLPAARVVDLG 117

Query: 218 CGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G G  +L LA+      V A +  K + E A  N    H+ N+++++ S          
Sbjct: 118 TGTGAVALALAKENPGWEVFASDYVKEAAELAERNRQRLHITNMQVLQGS---------- 167

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPP 300
                     + HS RF  I  +PP
Sbjct: 168 --------WYEPHSGRFDMIVSNPP 184


>gi|332830505|gb|EGK03131.1| hypothetical protein HMPREF9455_00764 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 169

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                  +L+  CG G  +L +AR+ + V  V+I+   ++ A  N    +++N   +
Sbjct: 58  HIKPDDTVLDFGCGTGAITLRIARNANEVYGVDISGGMLKRAELNRENQNIDNASFI 114


>gi|302518894|ref|ZP_07271236.1| methyltransferase [Streptomyces sp. SPB78]
 gi|302427789|gb|EFK99604.1| methyltransferase [Streptomyces sp. SPB78]
          Length = 219

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 192 AGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
              + H+L   L     G    +L+L  G+G  +L+ AR   RV A +++  +V +AR N
Sbjct: 10  PQADTHLLARALGTEPIGPHTHVLDLCTGSGALALLAARRGARVCATDLSWRAVVSARIN 69

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            A      V+++R       +  R E       D +   Y         PR     A   
Sbjct: 70  AARAG-QRVRVLRGDLSGPVRGQRFE------PDREQPPYVPDPAARTSPRRDRSHAASL 122

Query: 311 MVQAYP 316
              A P
Sbjct: 123 AWDAGP 128


>gi|219130845|ref|XP_002185565.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217402973|gb|EEC42930.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 386

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            G++LEL CG G  SL  A      V+A +     VE A  NI AN   +    +  S  
Sbjct: 197 NGNVLELGCGVGLVSLTAAILGAASVVATDGNPKVVELASRNIQANGYADCVKAQTLSWG 256

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
              AM    + + L   D+                L ++   +V+   +ILY+S
Sbjct: 257 LLDAMDNADQADWLVGSDLTYNAANWRV-------LAESMATIVKQEGYILYVS 303


>gi|327481906|gb|AEA85216.1| methyl transferase [Pseudomonas stutzeri DSM 4166]
          Length = 275

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   +V  V+  + +V  A  N  
Sbjct: 94  TELLVETALQLLPATPARVLDLGTGTGAIALALAAERPQWQVSGVDRIEAAVVLAERNRL 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
              + N    R                      ++   RF+ I  +PP     D  +  
Sbjct: 154 RLGLGNAHFARSD-----------------WFAEVTGERFQLIVSNPPYIPASDPHLQQ 195


>gi|330811718|ref|YP_004356180.1| methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379826|gb|AEA71176.1| Putative methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 276

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 19/114 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  LA        +L+L  G+G  +L LA  R   +V AV+    +V  A  N  
Sbjct: 94  TELLVETALALLPATPARVLDLGTGSGAIALALASERPAWKVTAVDRVLEAVALAERNRQ 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              ++NV +                 F+ L+D      RF+ I  +PP     D
Sbjct: 154 RLDLHNVTV------------LSSHWFSALED-----TRFELIISNPPYIAASD 190


>gi|89100359|ref|ZP_01173224.1| hypothetical protein B14911_01449 [Bacillus sp. NRRL B-14911]
 gi|89084980|gb|EAR64116.1| hypothetical protein B14911_01449 [Bacillus sp. NRRL B-14911]
          Length = 200

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 20/102 (19%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             ++G++L++ CG G   L +A+ F    V  V++   ++E A+ N A N V+N  I   
Sbjct: 56  PELEGNILDVGCGYGPIGLSIAKSFPERTVHMVDVNLRAIELAKENAAGNSVSNAAIY-- 113

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
                        E +RL  +     +F  I  +PP R+G  
Sbjct: 114 -------------ESDRLTGVG--GGKFAAILTNPPIRAGKQ 140


>gi|307728181|ref|YP_003905405.1| hypothetical protein BC1003_0110 [Burkholderia sp. CCGE1003]
 gi|307582716|gb|ADN56114.1| Conserved hypothetical protein CHP00095 [Burkholderia sp. CCGE1003]
          Length = 400

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 11/104 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L        ++L  +C  G FSL  L     RV++++ +  ++  A+ N+AAN  +  
Sbjct: 216 RLLVQQFAEGREVLNCFCYTGGFSLAALKGGAKRVVSIDSSGEALALAQQNVAANGFDAE 275

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   + +  F       +   RL D      RF  I +DPP+  
Sbjct: 276 RATWLDADAF-------KTLRRLYD---EGQRFDLIVLDPPKFA 309


>gi|257885489|ref|ZP_05665142.1| modification methylase HemK [Enterococcus faecium 1,231,501]
 gi|257821345|gb|EEV48475.1| modification methylase HemK [Enterococcus faecium 1,231,501]
          Length = 290

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 38/183 (20%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLI 179
           L +   +++   E   RL       +  ++L+   +  +  L   D+ D RL V   TLI
Sbjct: 51  LDWLLHMNEEISEEEQRL------IETDLRLLLADHPPQYLLGYADFYDHRLKVTEATLI 104

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAV 237
            R                ++EW L  T  +  +++++  G G  ++ L  AR    V AV
Sbjct: 105 PRPE-----------TEELVEWCLDETPDVPLEVIDIGTGTGAIAISLKAARRNWHVSAV 153

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           ++++ ++E A+ N        +      +                    +   +F  I  
Sbjct: 154 DLSEEALEVAKENAQKEGTK-ISFYHGDTL-----------------GPVMDQQFDVIIS 195

Query: 298 DPP 300
           +PP
Sbjct: 196 NPP 198


>gi|256839099|ref|ZP_05544609.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Parabacteroides sp. D13]
 gi|256740018|gb|EEU53342.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Parabacteroides sp. D13]
          Length = 318

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 26/176 (14%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           I   + ++      + L+R  + ++  L++      + L   + L D  +     + + L
Sbjct: 8   IRNSLKDIYPPGEAQALVRLIMERVCGLSTHQ----LLLGKGKELSDTEKFKIKEIVEGL 63

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
              K    L+G A         D+      V    LI R                ++E +
Sbjct: 64  RLYKPIQYLLGIA---------DFYGMEFKVTPDVLIPRPE-----------TAELVERI 103

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV 256
           +   +G    +L++  G+G  ++ LA+H     V AV+I+  ++  A  N   N V
Sbjct: 104 ITDYQGQAPRILDIGTGSGCIAISLAKHLPKAEVAAVDISPEALAMAEENARMNQV 159


>gi|302536303|ref|ZP_07288645.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302445198|gb|EFL17014.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 425

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                        + +L CG G  +L LAR   RVLAV++   +V  AR N  A  + ++
Sbjct: 120 YRAERLHGLGVRSVADLCCGIGGDALALARRGIRVLAVDLDPLTVAVARANAEALGLADL 179

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
             VR +                +  +D+ +Y    +F+DP R G
Sbjct: 180 IEVREA---------------DVTAVDVSAY--DAVFLDPARRG 206


>gi|268325126|emb|CBH38714.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
          Length = 272

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N       +E  L+   G   ++LE+  G+G  ++ LA+   +V+A+E ++ +V+  + 
Sbjct: 44  NNYEYGRKTVE-ALSEILGENFEVLEIGAGSGTLTIPLAKKIKKVVAIESSEMAVDYLKR 102

Query: 250 NIAANHVNNVKIV 262
           NI  + V NV+I+
Sbjct: 103 NIKESRVENVEII 115


>gi|27363733|ref|NP_759261.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Vibrio vulnificus CMCP6]
 gi|320157138|ref|YP_004189517.1| methylase of polypeptide chain release factors [Vibrio vulnificus
           MO6-24/O]
 gi|27359849|gb|AAO08788.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Vibrio vulnificus CMCP6]
 gi|319932450|gb|ADV87314.1| methylase of polypeptide chain release factors [Vibrio vulnificus
           MO6-24/O]
          Length = 291

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 69/220 (31%), Gaps = 52/220 (23%)

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D    E   +  +AL AR+   + +       I  +R++      VA  TLI R      
Sbjct: 50  DKILTEQEQQQFEALVARRLSGEPVAY-----IIGEREFWSLPFKVAPSTLIPRPD---- 100

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVE 245
                     ++E  L  T    G +L+L  G G  ++ LA       V+ V++ + +  
Sbjct: 101 -------TERLVELALEKTATQTGSILDLGTGTGAIAIALASELPHRTVMGVDLQQEAKL 153

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----- 300
            A  N  A ++ NV   + S                  +      +F  I  +PP     
Sbjct: 154 LAESNALALNIKNVTFKQGS----------------WFEPVAQGTKFALIVSNPPYIDEN 197

Query: 301 ---------RSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
                    R     A V        I YI        RD
Sbjct: 198 DPHLNQGDVRFEPKSALVAEESGLADIRYI----AQQARD 233


>gi|76801591|ref|YP_326599.1| hypothetical protein NP1886A [Natronomonas pharaonis DSM 2160]
 gi|76557456|emb|CAI49034.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 345

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSS 266
                + +++ G G F +  A+     + V++   ++E  R N   N   + +  +    
Sbjct: 181 EADESVFDMFAGVGPFVIPAAKRGADCVGVDLNAAAIEYLRRNAERNSVADRITAIHGDV 240

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E       E    R +  D +      I ++ P S 
Sbjct: 241 REVV----SEPPDERSEAADSYDDWADRIVMNLPHSA 273


>gi|300704889|ref|YP_003746492.1| protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum
           CFBP2957]
 gi|299072553|emb|CBJ43903.1| Protein-L-isoaspartate O-methyltransferase [Ralstonia solanacearum
           CFBP2957]
          Length = 246

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         D+LE+  G+G  + +LA     V  V+IA   V  AR N+
Sbjct: 93  PRVEARVLQELAVRKHE---DVLEVGAGSGYMAALLAHRGRHVTTVDIAPELVAFARDNL 149

Query: 252 AANHVNNVKIVRMSSK 267
           A N V N  +   ++ 
Sbjct: 150 ARNGVTNADVAEGNAA 165


>gi|294615326|ref|ZP_06695201.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1636]
 gi|294617195|ref|ZP_06696847.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1679]
 gi|291591829|gb|EFF23463.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1636]
 gi|291596540|gb|EFF27781.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1679]
          Length = 279

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 38/183 (20%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLI 179
           L +   +++   E   RL       +  ++L+   +  +  L   D+ D RL V   TLI
Sbjct: 40  LDWLLHMNEEISEEEQRL------IETDLRLLLADHPPQYLLGYADFYDHRLKVTEATLI 93

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAV 237
            R                ++EW L  T  +  +++++  G G  ++ L  AR    V AV
Sbjct: 94  PRPE-----------TEELVEWCLDETPDVPLEVIDIGTGTGAIAISLKAARRNWHVSAV 142

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           ++++ ++E A+ N        +      +                    +   +F  I  
Sbjct: 143 DLSEEALEVAKENAQKEGTK-ISFYHGDTL-----------------GPVMDQQFDVIIS 184

Query: 298 DPP 300
           +PP
Sbjct: 185 NPP 187


>gi|57090201|ref|XP_537470.1| PREDICTED: similar to tRNA-(N1G37) methyltransferase [Canis
           familiaris]
          Length = 541

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 93/258 (36%), Gaps = 23/258 (8%)

Query: 79  GSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA-- 135
            +  I+   +E+     + E +L+A L +   +TS    + V  I H  L D        
Sbjct: 208 VNPQISKYNLELTYENFKSEEILKAVLPEGQDVTS--GFSRVGHIAHLNLRDHQLPFKHL 265

Query: 136 --IRLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLTVAGRTLIYRQIENSFTQP- 190
               + D        +  I   + T      +    +E +    R   Y   E  F++  
Sbjct: 266 IGQVMIDKNPGITSAVNKINNIDNTYRNFQMEVLSGEENMMTKVRENSYTY-EFDFSKVY 324

Query: 191 -NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            N  ++    E          GD+L +++ G G F++ +A+    V A ++   S +   
Sbjct: 325 WNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESHKWLL 381

Query: 249 YNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +N   N V+  VK+  +  K+F Q   R+    +L  +         I ++ P   ++  
Sbjct: 382 HNCKLNKVDQKVKVFNLDGKDFLQGPVRKELMEQLGPLSKERKHSVHIVMNLPAKAIEFL 441

Query: 308 -TVGMVQAYPHILYISCN 324
                +   P     SCN
Sbjct: 442 NVFKSLLDGP-----SCN 454


>gi|125973835|ref|YP_001037745.1| 50S ribosomal protein L11P methyltransferase [Clostridium
           thermocellum ATCC 27405]
 gi|256004287|ref|ZP_05429269.1| ribosomal protein L11 methyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|281417995|ref|ZP_06249015.1| ribosomal protein L11 methyltransferase [Clostridium thermocellum
           JW20]
 gi|166223411|sp|A3DF23|PRMA_CLOTH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|125714060|gb|ABN52552.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Clostridium thermocellum ATCC 27405]
 gi|255991721|gb|EEU01821.1| ribosomal protein L11 methyltransferase [Clostridium thermocellum
           DSM 2360]
 gi|281409397|gb|EFB39655.1| ribosomal protein L11 methyltransferase [Clostridium thermocellum
           JW20]
 gi|316939969|gb|ADU74003.1| ribosomal protein L11 methyltransferase [Clostridium thermocellum
           DSM 1313]
          Length = 313

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M   +L         ++++ CG G  S++ ++     V AV+I + +V+ A+ N+  
Sbjct: 160 TTKMCAVLLDKYVKDGCRVIDVGCGTGILSIIASKLGAAEVTAVDIDEVAVKVAKENLEL 219

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N V+NV++ +    +  +  R     N + ++
Sbjct: 220 NKVDNVRVFKGVLDDIEKEKRDIVVANIIANV 251


>gi|260830557|ref|XP_002610227.1| hypothetical protein BRAFLDRAFT_245805 [Branchiostoma floridae]
 gi|229295591|gb|EEN66237.1| hypothetical protein BRAFLDRAFT_245805 [Branchiostoma floridae]
          Length = 411

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 104/298 (34%), Gaps = 30/298 (10%)

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
               ++  +  +  +  +  L +    +   + +L A L + +  T+ S    +  +  R
Sbjct: 86  GEHGKLLQENGVTAAPHLYDLQLG-YESWTAQEVLTAVLPEGEVTTAFSRVGHIAHLNLR 144

Query: 126 LLDDAWRECAIR-LRDALHARKYQIQLIGRANKT------KICLDRDYVDERLTVAGRTL 178
                ++    + + D        +      N T      ++    D     +     + 
Sbjct: 145 DHQLPYKTLIGQVIMDKNQGITSVVNKTNIINNTFRFFSMELIAGEDKTTVTVKENHCSF 204

Query: 179 IYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
            +      F Q   N  +        +      +  + +++ G G FS+  AR    +LA
Sbjct: 205 EF-----DFAQVYWNPRLGTE--HERITNKLRARDVVYDVFAGVGPFSIPAARKRCEILA 257

Query: 237 VEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFK 293
            ++   S +   +N   N V + V+   M  ++F Q + ++   +R +  D D+  +   
Sbjct: 258 NDLNPESYKWLVHNTKLNKVQDRVRTFNMDGRQFIQEVVKKDMIDRCQAEDADLQDHTSH 317

Query: 294 TIFVDPPRSG-LDDATVGMVQA------YPHILYISCNPDSLCRDLSILSTTHTIERL 344
            I   P  +    DA VG++         P +++  C+  S   D +     H +E +
Sbjct: 318 VIMNLPAMAVEFLDAFVGLLAGETLQEYRPPMIH--CHTFSKADDPAA-DARHRVEEV 372


>gi|207728149|ref|YP_002256543.1| protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum
           MolK2]
 gi|206591394|emb|CAQ57006.1| protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum
           MolK2]
          Length = 233

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         D+LE+  G+G  + +LA     V  V+IA   V  AR N+
Sbjct: 80  PRVEARVLQELAVRKHE---DVLEVGAGSGYMAALLAHRGRHVTTVDIAPELVAFARDNL 136

Query: 252 AANHVNNVKIVRMSSK 267
           A N V N  +   ++ 
Sbjct: 137 ARNGVTNADVAEGNAA 152


>gi|168699209|ref|ZP_02731486.1| oxidoreductase [Gemmata obscuriglobus UQM 2246]
          Length = 394

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 41/186 (22%)

Query: 173 VAGRTLIYRQIENS-----FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           +    L +R    S     F   +   N   L  + A        +L++ C  G F +  
Sbjct: 185 INEHGLKFRVAPGSKHKTGFF-VDQRDNRKTLAGLCA-----GKRVLDICCNTGGFGVY- 237

Query: 228 ARH---FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           A+       V+ +++ + +++ A+ N   N    V+ V+               F  L+D
Sbjct: 238 AKALGGAAEVVGLDLDEQALDMAKQNAKLNGAQ-VRYVQAD------------LFAWLRD 284

Query: 285 IDIHSYRFKTIFVDPP-------------RSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
           +  +  RF T+ +DP              +   D   + M+   P  + +SC+   L  +
Sbjct: 285 VIPNGERFDTVILDPAKLTRDREDVESALKKYCDMNRLAMLVVKPGGVLLSCSCTGLVSE 344

Query: 332 LSILST 337
              L +
Sbjct: 345 ADFLES 350


>gi|149175244|ref|ZP_01853866.1| putative methyltransferase [Planctomyces maris DSM 8797]
 gi|148845853|gb|EDL60194.1| putative methyltransferase [Planctomyces maris DSM 8797]
          Length = 260

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +L+    A     G LL+L CG G  ++ LA  F+ VLAV+     + AA+      
Sbjct: 22  QALLLQVCEQAPLTGSGRLLDLGCGTGELAIRLASRFEEVLAVDPDAEMLAAAQQKAREQ 81

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              N++    S+++F+     E +   L  I    +      + P
Sbjct: 82  QATNIQWRNQSAEQFST----EPDSFELITIGAAFHWMDRPVMAP 122


>gi|297848002|ref|XP_002891882.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337724|gb|EFH68141.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 437

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 28/127 (22%)

Query: 213 LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEF 269
           +L+L C +G F+L  AR     V+ ++ + P++E AR N+  N+++   V   +  S EF
Sbjct: 264 VLDLCCYSGGFALNAARGGATSVIGIDSSLPALELARENVILNNMDPEKVVFFKQDSTEF 323

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
            +      E             +  + +DPP+          +     +L+   N   + 
Sbjct: 324 MKGALSREE------------TWDIVILDPPK----------LAPRKKVLH---NAAGMY 358

Query: 330 RDLSILS 336
           R+L+ L+
Sbjct: 359 RNLNSLA 365


>gi|320094007|ref|ZP_08025832.1| 16S rRNA methyltransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979051|gb|EFW10569.1| 16S rRNA methyltransferase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 203

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 17/148 (11%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV--L 227
           R++  G  L  R     F+     +    L    A     +G LL+L CG G  ++V  L
Sbjct: 21  RVSARGHELTMRVSPKVFSSSRLDLGTRQL-LAEAPELPGRGTLLDLGCGWGPLAVVMGL 79

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                 V AV++   +++    N  AN   NV    M++ E  +  R E           
Sbjct: 80  ESPGATVWAVDVNTRALDLTERNAEANGAANVS--AMNAGEALERARSE----------- 126

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAY 315
              RF  I+ +PP     +A   M+  +
Sbjct: 127 -GVRFDAIWSNPPVRVGKEAMRRMLSDW 153


>gi|298372803|ref|ZP_06982793.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275707|gb|EFI17258.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 283

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 51/243 (20%)

Query: 82  LINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW---RECAIRL 138
           +IN +  E+ A      +         +++   D+        RL+ D      E   R+
Sbjct: 6   IINRIKSELSALYDKNEV-------ESFVSLLLDKICGLNTTKRLISDKIYLSDEQNGRI 58

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
            DAL       +L        I    D+    L    R LI R                +
Sbjct: 59  DDALE------RLKRYEPIQYIIGYTDFYGLTLRTDRRALIPRPE-----------TEEL 101

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           ++W+L        +++++  G+G  ++ LA++    +V A++I+  ++  AR N   N  
Sbjct: 102 VDWILQECS-TAKNVIDICTGSGCIAVCLAKYLKEAKVSALDISSEAIGLARENA-LNQR 159

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            ++   +                  +   D    +F  I  +PP   L++     +   P
Sbjct: 160 LDIVFYQKD----------------IMATDSLWQKFDLIVANPPYVTLNEK----IDMMP 199

Query: 317 HIL 319
           ++L
Sbjct: 200 NVL 202


>gi|300867857|ref|ZP_07112499.1| Mg-protoporphyrin IX methyl transferase [Oscillatoria sp. PCC 6506]
 gi|300334188|emb|CBN57675.1| Mg-protoporphyrin IX methyl transferase [Oscillatoria sp. PCC 6506]
          Length = 228

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 16/134 (11%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA--RYNIAANH 255
           +LEW++A        + +  CG G+ S+ LA     V A +I++  V  A  R N     
Sbjct: 49  VLEWLVADGNLPGLLVCDAGCGVGSLSIPLAEAGAIVYASDISEKMVAEAYERANAVPGK 108

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            NNV       +  +                 H+     + +  P+   +     +    
Sbjct: 109 ANNVTFTAQDLEALSGQY--------------HTVICLDVLIHYPQEQAEGMISHLSSMA 154

Query: 316 PHILYISCNPDSLC 329
              + +S  P +L 
Sbjct: 155 ESRVIVSFAPKTLA 168


>gi|299470614|emb|CBN80236.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1003

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L+L CG G F+L   A     V+ V+ A  +V  A  N  AN +++ 
Sbjct: 658 KALVRKLARGLDVLDLMCGTGGFALNAAAGGARSVIGVDKAARAVRTATKNARANGLDDA 717

Query: 260 KIV 262
              
Sbjct: 718 ATF 720


>gi|120609499|ref|YP_969177.1| SAM-dependent methyltransferase [Acidovorax citrulli AAC00-1]
 gi|120587963|gb|ABM31403.1| 23S rRNA m(5)C-1962 methyltransferase / SAM-dependent
           methyltransferase [Acidovorax citrulli AAC00-1]
          Length = 395

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  YC  G F++  LA    +V +++ + P++E AR + A N  +  +   + + +  
Sbjct: 220 QVLNCYCYTGGFTVAALAGGASQVTSIDSSGPALERARSHAALNGFDAARTEFLDA-DVN 278

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            ++RR  +  R         RF  I +DPP+  
Sbjct: 279 ASLRRFLQEGR---------RFDAIVLDPPKFA 302


>gi|300781317|ref|ZP_07091171.1| RsmD family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
 gi|300533024|gb|EFK54085.1| RsmD family RNA methyltransferase [Corynebacterium genitalium ATCC
           33030]
          Length = 195

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 209 IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +   +L+L+ G+G   L   +R  D V+ VE    +VE  ++N  A    NV I  + + 
Sbjct: 43  VGKRVLDLFSGSGALGLEAASRGADEVVLVESDPKAVEIIKHNAQAVGHPNVHIEPVKAS 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            +     R                F  +  DPP    D+    M++A  
Sbjct: 103 AYVPRAPRAY--------------FDMVLADPPYDLPDEDVAAMLEALK 137


>gi|159039552|ref|YP_001538805.1| HemK family modification methylase [Salinispora arenicola CNS-205]
 gi|157918387|gb|ABV99814.1| modification methylase, HemK family [Salinispora arenicola CNS-205]
          Length = 304

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 10/154 (6%)

Query: 161 CLDRDYVDERLTVAGRTLIYR-----QIENSFTQPNAGINVHMLEW-VLAATKGIQGDLL 214
            + R    E L     +  +R          F          +  W V  A +     ++
Sbjct: 72  LVTRRAAREPLQYLTGSAPFRYLELAVGPGVF--VPRPETELLAGWGVEQARREAAPLVV 129

Query: 215 ELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L  G+G  +L +A+     RV+AVE +  ++   R N+A+      + V + + + T  
Sbjct: 130 DLCSGSGAIALAVAQEVPAARVVAVEGSPAALSWLRRNVASRAAGGDRAVEVVAADVTAP 189

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                   R+  +  +        V PP  G  D
Sbjct: 190 DLLAELLGRVDVLLCNPPYVPADIVVPPEVGRHD 223


>gi|321259059|ref|XP_003194250.1| hypothetical protein CGB_E2230C [Cryptococcus gattii WM276]
 gi|317460721|gb|ADV22463.1| conserved hypothetical protein [Cryptococcus gattii WM276]
          Length = 426

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ +CG G  ++  A+  +RV+A++     ++ AR+N   +   + ++ +     EF +
Sbjct: 250 IVDAFCGVGGNAIAFAKTCERVIAIDNDITRLKLARHNALHHGVADRIEFILGDYTEFAR 309

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           +   +   +++            +F+ PP  G+D
Sbjct: 310 SFAEKNPEDKV----------DVVFLSPPWGGID 333


>gi|157145533|ref|YP_001452852.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Citrobacter koseri ATCC BAA-895]
 gi|157082738|gb|ABV12416.1| hypothetical protein CKO_01276 [Citrobacter koseri ATCC BAA-895]
          Length = 277

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPDSPCRILDLGTGTGAIALALATERPDCEVTAVDRMPDAVALAGRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           ++NV+I++                       +   +F  I  +PP     D  +  
Sbjct: 158 IHNVRILQSD-----------------WFAALPGQQFDMIVSNPPYIDAHDPHLAQ 196


>gi|289192404|ref|YP_003458345.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus sp. FS406-22]
 gi|288938854|gb|ADC69609.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus sp. FS406-22]
          Length = 186

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 38/67 (56%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++ CG+G  ++ +AR    V A++  + ++E  + N+A  ++ N +I++  +++    
Sbjct: 42  VVDVGCGSGGMTVEIARRCKFVYAIDYLEDAIEVTKQNLAKFNIKNCQIIKGRAEDILDK 101

Query: 273 MRREREF 279
           +   + F
Sbjct: 102 LEFNKAF 108


>gi|262041833|ref|ZP_06015018.1| protein methyltransferase HemK [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040825|gb|EEW41911.1| protein methyltransferase HemK [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 283

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV++   +V  A  N     
Sbjct: 99  LVEQALARLPTAPCRILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAEHLG 158

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + NV I +                       +   RF TI  +PP
Sbjct: 159 IANVTISQSD-----------------WFSALDGQRFATIVSNPP 186


>gi|111021990|ref|YP_704962.1| hypothetical protein RHA1_ro05023 [Rhodococcus jostii RHA1]
 gi|110821520|gb|ABG96804.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 197

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           ++ +L       G++L++ CG G+ ++ +AR   +V  ++  + +++ AR       V+ 
Sbjct: 27  IDTLLDPFDAPPGEVLDIGCGTGDHAIEMARRGWQVTGIDTVQLALDKARSKARKAGVD- 85

Query: 259 VKIVRMSSKEFTQAMRREREF-------NRLKDIDIHSYRFKTIFVDPPRS 302
           V+ +   + +   A+ R           + L D D  +Y      V  P +
Sbjct: 86  VRFMHADATDLEHAVGRGYHLILDVGCYHGLSDHDRVAYAENVTTVSEPHA 136


>gi|330941683|gb|EGH44458.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 277

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEKLVEAALELVPAFAPAQVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +NN ++                 F       +   +F  I  +PP
Sbjct: 154 QRLQLNNAEV-----------------FESHWLSGLQGRQFDLIISNPP 185


>gi|154151708|ref|YP_001405326.1| methyltransferase small [Candidatus Methanoregula boonei 6A8]
 gi|154000260|gb|ABS56683.1| methyltransferase small [Methanoregula boonei 6A8]
          Length = 202

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 25/140 (17%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEA 246
            Q  A +   +L     +    +  +++L CG G  ++  A      V   +I   ++  
Sbjct: 26  YQTPATLAARLLYDAFVSGDIAEKTVMDLGCGTGILAIGAALLGAREVRGTDIDPEALRT 85

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--- 303
           A  N A    + V  +                    + ID       T+ ++PP      
Sbjct: 86  AEKNAALLGAD-VTFIAADVGST-------------EKID----PCDTVVMNPPFGAQKQ 127

Query: 304 ---LDDATVGMVQAYPHILY 320
               D   +    A   + Y
Sbjct: 128 NIHADRPFIDCALAIAPVTY 147


>gi|78187088|ref|YP_375131.1| hypothetical protein Plut_1226 [Chlorobium luteolum DSM 273]
 gi|78166990|gb|ABB24088.1| SAM-dependent methyltransferase [Chlorobium luteolum DSM 273]
          Length = 393

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+++  +G F L  LA      L V+ ++ +++ A  N   N ++N  ++   + + 
Sbjct: 220 ARVLDVFTNDGGFGLNALAGGASSALLVDASEEALKRAERNAGLNGMDNFSLMAGDAFDV 279

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
            Q M   +E            +F  + +DPP            ++AY  +
Sbjct: 280 LQQMIDAKE------------QFDIVILDPPSFTKSRKNLPVALKAYKKL 317


>gi|261208267|ref|ZP_05922940.1| modification methylase HemK [Enterococcus faecium TC 6]
 gi|289565644|ref|ZP_06446090.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium D344SRF]
 gi|260077524|gb|EEW65242.1| modification methylase HemK [Enterococcus faecium TC 6]
 gi|289162612|gb|EFD10466.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium D344SRF]
          Length = 290

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 67/183 (36%), Gaps = 38/183 (20%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLI 179
           L +   +++   E   RL       +  ++L+   +  +  L   D+ D RL V   TLI
Sbjct: 51  LDWLLHMNEEISEEEQRL------IETDLRLLLADHPPQYLLGYADFYDHRLKVTEATLI 104

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAV 237
            R                ++EW L  T  +  +++++  G G  ++ L  AR    V AV
Sbjct: 105 PRPE-----------TEELVEWCLDETPDVPLEVIDIGTGTGAIAISLKAARRNWHVSAV 153

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           ++++ ++E A+ N        +      +                    +   +F  I  
Sbjct: 154 DLSEEALEVAKENAQKEGTK-ISFYHGDTL-----------------GPVMDQQFDVIIS 195

Query: 298 DPP 300
           +PP
Sbjct: 196 NPP 198


>gi|229003116|ref|ZP_04160963.1| hypothetical protein bmyco0002_1050 [Bacillus mycoides Rock1-4]
 gi|228758131|gb|EEM07329.1| hypothetical protein bmyco0002_1050 [Bacillus mycoides Rock1-4]
          Length = 199

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 21/104 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N V NV+I 
Sbjct: 54  QMPDIKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALGLAKENAANNKVENVRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
           + S  E                      ++  I  +PP R+G  
Sbjct: 114 QSSVYENVDG------------------KYAAILSNPPIRAGKH 139


>gi|53805109|ref|YP_113211.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Methylococcus capsulatus str. Bath]
 gi|53758870|gb|AAU93161.1| modification methylase, HemK family [Methylococcus capsulatus str.
           Bath]
          Length = 321

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 33/143 (23%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           YVDER+ V  R+ I   IEN F QP          W++       GD+L+L  G+G  ++
Sbjct: 104 YVDERVLV-PRSPIAELIENQF-QP----------WLV---PDAVGDVLDLCTGSGCIAI 148

Query: 226 VLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
             A  F   RV AV+I+  ++E A  N+ A+ +   + VR+   +  Q +          
Sbjct: 149 ACAEAFPQARVDAVDISGGALEVAGMNVRAHGLE--ETVRLVHSDLYQQL---------- 196

Query: 284 DIDIHSYRFKTIFVDPPRSGLDD 306
                  R+  I  +PP   L +
Sbjct: 197 ----DGSRYDLIVSNPPYVNLQE 215


>gi|332184656|gb|AEE26910.1| modification methylase, HemK family [Francisella cf. novicida 3523]
          Length = 284

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 77/216 (35%), Gaps = 34/216 (15%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKI 160
           AK  Q D  T    Q I+  +              RL ++ L     +I  +        
Sbjct: 15  AKFNQCDISTKHDLQMIICDVLDVDKTYLCINSDRRLDKNTLKEIDEKILRLLAGEPLAY 74

Query: 161 CLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
            L  + + +++L V   TLI R                ++  VL         L  L+L 
Sbjct: 75  ILGYKYFWNQKLYVTKDTLIPR-----------ADTEVLVSTVLDDIVDKNAKLKILDLG 123

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G G   L LA      +++AV++ + S++ A+ N  AN++ NVK ++ S          
Sbjct: 124 TGTGAIGLALAAELVNSQIVAVDLYQQSLDVAKNNAQANNITNVKFIQSS---------- 173

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                      + + +F  I  +PP   L D  +  
Sbjct: 174 -------WYTSLDTGKFDIIVSNPPYIDLADTNIEQ 202


>gi|302676902|ref|XP_003028134.1| hypothetical protein SCHCODRAFT_28617 [Schizophyllum commune H4-8]
 gi|300101822|gb|EFI93231.1| hypothetical protein SCHCODRAFT_28617 [Schizophyllum commune H4-8]
          Length = 258

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEF 269
             +L+ +CG G  ++  A+   RV+A++     +  AR+N       + ++ +      F
Sbjct: 67  DTILDAFCGVGGNAIAFAQTCQRVIALDTDPTRLALARHNAQIYGVADRIEFILTDYVAF 126

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            +A    +E ++   +   +     +F+ PP  G
Sbjct: 127 AEAYISRKEISQ-TAVTKPARMIDVVFLSPPWGG 159


>gi|296395007|ref|YP_003659891.1| type 11 methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296182154|gb|ADG99060.1| Methyltransferase type 12 [Segniliparus rotundus DSM 44985]
          Length = 478

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             L     I+G +L+  CG G  S+ LA     V+ ++++  +VE AR   A   V    
Sbjct: 287 QALRKQGEIKGSVLDAGCGVGVTSVWLAEQGHPVVGLDLSSVAVERARRLAAERGVV-AD 345

Query: 261 IVRMSSKEFT 270
                  EFT
Sbjct: 346 FEAADLSEFT 355


>gi|228995491|ref|ZP_04155159.1| hypothetical protein bmyco0003_950 [Bacillus mycoides Rock3-17]
 gi|228764220|gb|EEM13099.1| hypothetical protein bmyco0003_950 [Bacillus mycoides Rock3-17]
          Length = 213

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 21/104 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N V NV+I 
Sbjct: 68  QMPDIKGDVLDVGCGYGPIGLSLAKEFQERSVHMVDVNERALGLAKENAANNKVENVRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
           + S  E                      ++  I  +PP R+G  
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKH 153


>gi|13899148|gb|AAG12413.1| BchM [Chlorobaculum tepidum]
          Length = 232

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y D++L+    T+          Q +A +     EW+          +L+  CG G F++
Sbjct: 31  YGDDKLSTVRSTVR---------QGHAVMMDKAFEWLQKTGLPKGSKILDAGCGTGLFTI 81

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKD 284
            LA+   RV A +IA+  V   R +     V  N+K    S K  +        F+ L  
Sbjct: 82  RLAKSGYRVKAADIAEQMVNKTREDAEKAGVAGNIKFEVNSIKSVSGTFDAVVCFDVLIH 141

Query: 285 IDIHSY 290
                +
Sbjct: 142 YPAEGF 147


>gi|296418726|ref|XP_002838976.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634970|emb|CAZ83167.1| unnamed protein product [Tuber melanosporum]
          Length = 248

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 182 QIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNG--NFSLVLARHFDRVLAVE 238
             +N + +     +   + + VL +       +L+++CG G       L+    RV+AV+
Sbjct: 60  ITQNGWFEVTPEKVARKIADHVLGSPVE---TILDVFCGIGGNAIQFALSTSCKRVIAVD 116

Query: 239 IAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
             + +++ AR+N      ++ ++ V     +       E++  RL            +F+
Sbjct: 117 KDQTAIDCARHNARIYGVLDKIEFVVGDVFQLI-----EKQDPRLAA--------DAVFM 163

Query: 298 DPPRSG 303
            PP  G
Sbjct: 164 SPPWGG 169


>gi|256421554|ref|YP_003122207.1| methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
 gi|256036462|gb|ACU60006.1| Methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
          Length = 280

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 31/58 (53%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D+L+L CG+G  +L  AR   RVL V+IA+  V A    I    + N++I+   +   
Sbjct: 48  DVLDLGCGDGTTALPSARLGARVLGVDIARNLVAAGNKRIEEEGLTNIRILEGDATHL 105


>gi|66547731|ref|XP_393324.2| PREDICTED: hemK methyltransferase family member 1-like isoform 1
           [Apis mellifera]
          Length = 349

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
           + Q +K ++        +L    +    +  I  +   R K   I       +  +  +I
Sbjct: 20  YVQCSKAKITTFNRSTRNLSTINVQCPTIGEIIEQWSNRFKNEHIPEPVESIEHIVAHVI 79

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK--TKICLDRDYVDERLTVAGRTLIY 180
               + D       RL          +     +      I  + D+ D  L +     I 
Sbjct: 80  GTNKILDLVDIKNERLTSVQRDTLDSLCECRLSRMPIQYIIGEWDFCDITLKLVPPIFIP 139

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVE 238
           R        P   I VH +   L ++   + ++LE+ CG+G  SL +A     V  +A++
Sbjct: 140 R--------PETEILVHYILKALKSSDNNKQEILEIGCGSGAISLAIAHANKTVHCIAID 191

Query: 239 IAKPSVEAARYNI-AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
               + E  + N    N  + + +V  + K+           N  K++D++S  F  I  
Sbjct: 192 SNPEACELTKKNRDKLNLKDRISVVHATLKDNGSIEISNESKNESKNLDLNSKIFDFIVS 251

Query: 298 DPP 300
           +PP
Sbjct: 252 NPP 254


>gi|88859887|ref|ZP_01134526.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
           methyltransferase activity and a PUA domain
           [Pseudoalteromonas tunicata D2]
 gi|88817881|gb|EAR27697.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
           methyltransferase activity and a PUA domain
           [Pseudoalteromonas tunicata D2]
          Length = 396

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                      D+L  +C  G F L  L  +   V+ V++++P+++ A+ N+  N+++  
Sbjct: 212 RAALERFSEGNDVLNCFCYTGTFGLYALRGNCKSVINVDVSQPALDTAKRNVEINNLDLT 271

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
           K   +  ++  + +R+ RE  RL         F T+ +DPP+   + A   G  + Y  I
Sbjct: 272 KAEFVK-QDVFKLLRQYREEGRL---------FDTVVMDPPKFADNKAQLTGACRGYKDI 321


>gi|296215208|ref|XP_002753998.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Callithrix
           jacchus]
          Length = 574

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 95/262 (36%), Gaps = 31/262 (11%)

Query: 60  HIMFDQQTKER--MRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + MF   + E   + +   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 208 YKMFTHDSFEEAELSVLEQLNVSPQISEYNLELTYENFKSEEILRAVLPEGQDVTS--GF 265

Query: 117 AIVTLIYHRLLDDAWRECA----IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
           + V  I H  L D            + D        +  I   + T     R++  E L+
Sbjct: 266 SRVGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNT----YRNFQMEVLS 321

Query: 173 --------VAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNG 221
                   V      Y   E  F++   N  ++    E          GD+L +++ G G
Sbjct: 322 GEQNMMTKVRENNYTY---EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVG 375

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFN 280
            F++ +A+    V A ++   S +   +N   N V+ NVK+  +  K+F Q   +E    
Sbjct: 376 PFAIPVAKKNCTVFANDLNPESHKWLLHNCKLNKVDQNVKVFNLDGKDFLQGPIKEELMQ 435

Query: 281 RLKDIDIHSYRFKTIFVDPPRS 302
            L            +   P ++
Sbjct: 436 LLSLSKERKPSVHIVMNLPAKA 457


>gi|260220000|emb|CBA27100.1| Ribosomal RNA large subunit methyltransferase I [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 395

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  Y   G FS+  LA     V +++ + P++E A+ N+A N  +  +   M + +  
Sbjct: 220 RVLNCYSYTGGFSVAALAGGAAHVTSIDSSGPAIEKAKANVALNGFDAARATFMDA-DVN 278

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            ++R                 F  I +DPP+  
Sbjct: 279 ASLRA---------FAAEGRTFDAIILDPPKFA 302


>gi|291534480|emb|CBL07592.1| SAM-dependent methyltransferase [Roseburia intestinalis M50/1]
          Length = 415

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G F+L         V  ++I++ +V+ A  N   N + 
Sbjct: 223 YNRLAMQRICKGKKVLDCFTHMGTFALNAGIAGAADVTGLDISEYAVQQANENARRNGLE 282

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316
           +           T   R     + L  +     ++  + +DPP            ++ Y 
Sbjct: 283 D-----------TVHFRCANVLDELPKLAQSGEQYDVVILDPPAFTKSRQATKNAIKGYR 331

Query: 317 HI 318
            I
Sbjct: 332 EI 333


>gi|149185849|ref|ZP_01864164.1| Methyltransferase type 12 [Erythrobacter sp. SD-21]
 gi|148830410|gb|EDL48846.1| Methyltransferase type 12 [Erythrobacter sp. SD-21]
          Length = 353

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 19/149 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +         + ++ CG+G+ S+++A+ +    V+  +  +PS+E AR    A  V NV 
Sbjct: 168 VEEKLKAGAKIADIGCGHGSSSILMAQAYPNSEVIGFDFHEPSIEEARRKAKAAGVGNVH 227

Query: 261 IVRMSSKEFT-QAMRREREFNRLKDIDIHSY----------RFKTIFVDPPRSGLDDATV 309
               S++++  +A      F+ L D+                  T  +  P +G  D+  
Sbjct: 228 FEVASAQDYPGKAYDFACIFDALHDMGDPVGAARHIRETLKEDGTFMLVEPMAG--DSMA 285

Query: 310 GMVQAYPHILYI----SCNPDSLCRDLSI 334
             +     I Y      C P SL +D+ +
Sbjct: 286 DNMHPLGQIFYAFSTTVCTPASLAQDVGL 314


>gi|291541322|emb|CBL14433.1| SAM-dependent methyltransferase [Roseburia intestinalis XB6B4]
          Length = 403

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G F+L         V  ++I++ +V+ A  N   N + 
Sbjct: 211 YNRLAMQRICKGKKVLDCFTHMGTFALNAGIAGAADVTGLDISEYAVQQANENARRNGLE 270

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316
           +           T   R     + L  +     ++  + +DPP            ++ Y 
Sbjct: 271 D-----------TVHFRCANVLDELPKLAQSGEQYDVVILDPPAFTKSRQATKNAIKGYR 319

Query: 317 HI 318
            I
Sbjct: 320 EI 321


>gi|156937981|ref|YP_001435777.1| methyltransferase type 11 [Ignicoccus hospitalis KIN4/I]
 gi|156566965|gb|ABU82370.1| Methyltransferase type 11 [Ignicoccus hospitalis KIN4/I]
          Length = 263

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 1/102 (0%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            V ++   L +     G +L+  CG G  ++ LA +   VL ++I+   VE A   IA  
Sbjct: 31  QVALIARALKSHGVRSGLVLDAGCGTGRITVGLAEYGYEVLGIDISPKFVEEANERIARA 90

Query: 255 HVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            V N  + V    +   + ++  R    +       +    +
Sbjct: 91  GVENKARCVVGDLRRLPEVVKDLRFDAVVSWFSSFGFYGDEV 132


>gi|58584248|ref|YP_203264.1| oxidoreductase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58428842|gb|AAW77879.1| oxidoreductase [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 450

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 16/101 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+    +G    +L+L C  G F++   AR    VL V+I +  +  A+ N   N+V  
Sbjct: 270 QWLSEQVEGKT--VLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVR- 326

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K V+               F  L+D      +F  + +DP
Sbjct: 327 PKFVQAD------------IFPWLRDASNRGEQFDVVILDP 355


>gi|189347631|ref|YP_001944160.1| Mg-protoporphyrin IX methyl transferase [Chlorobium limicola DSM
           245]
 gi|189341778|gb|ACD91181.1| magnesium protoporphyrin O-methyltransferase [Chlorobium limicola
           DSM 245]
          Length = 232

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y D++L+    T+          Q +A +      W+          +L+  CG G FS+
Sbjct: 31  YGDDKLSTVRNTVR---------QGHAVMMDKAFSWLQQLNLPKGATILDAGCGTGLFSI 81

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            LA+   +V AV+IA   VE A+ +     VNN
Sbjct: 82  RLAKEGYKVKAVDIASQMVEKAKADATMQGVNN 114


>gi|228905898|ref|ZP_04069795.1| hypothetical protein bthur0013_890 [Bacillus thuringiensis IBL 200]
 gi|228853713|gb|EEM98473.1| hypothetical protein bthur0013_890 [Bacillus thuringiensis IBL 200]
          Length = 213

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 68  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           + S  E                      ++  I  +PP     D    +++ 
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKDVVHEILEK 161


>gi|228963201|ref|ZP_04124370.1| hypothetical protein bthur0004_920 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796459|gb|EEM43898.1| hypothetical protein bthur0004_920 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 199

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 54  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           + S  E                      ++  I  +PP     D    +++ 
Sbjct: 114 QSSVYENVDG------------------KYAAILSNPPIRAGKDVVHEILEK 147


>gi|218895236|ref|YP_002443647.1| ybxB protein [Bacillus cereus G9842]
 gi|218542476|gb|ACK94870.1| ybxB protein [Bacillus cereus G9842]
          Length = 199

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 54  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           + S  E                      ++  I  +PP     D    +++ 
Sbjct: 114 QSSVYENVDG------------------KYAAILSNPPIRAGKDVVHEILEK 147


>gi|307298996|ref|ZP_07578798.1| methyltransferase small [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915421|gb|EFN45806.1| methyltransferase small [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 225

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 19/133 (14%)

Query: 174 AGRTLIYRQIENSFTQPNAGIN--VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
                +    E  F+  +A IN    +L W +   KG +   LEL  G+G  S+ LA++F
Sbjct: 7   DFDPYVLEAFEFDFSSRHARINHGTVLLSWFVEPPKGSR-RALELGAGSGVISIYLAKNF 65

Query: 232 D-RVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              V  VE+ +     A  N + N V N+ + V     ++    R E             
Sbjct: 66  GLEVTGVEVDRELHAVATKNASLNGVENLTRFVNCDIDDYAANNRGE------------- 112

Query: 290 YRFKTIFVDPPRS 302
             F  +  +PP  
Sbjct: 113 -VFDMVVSNPPHF 124


>gi|329939180|ref|ZP_08288554.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus
           M045]
 gi|329302065|gb|EGG45958.1| SAM-dependent methyltransferase [Streptomyces griseoaurantiacus
           M045]
          Length = 204

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 9/119 (7%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +     G  GDLL+L CG G+ SL+ A    RV  V+ +   ++ AR         + +
Sbjct: 42  RLRRWLPGSPGDLLDLGCGTGSLSLLAAEAGHRVTGVDASPAMLDRAR--AKLAG-RDAE 98

Query: 261 IVRMSSKE------FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            +R  +           A+        L D       +  +     R  L +   G V 
Sbjct: 99  FLRGDAAAPPVGGRRFDAVLVRHVLWTLPDPAAALRHWHGLLRSGGRMVLVEGVWGTVS 157


>gi|313892389|ref|ZP_07825981.1| putative 23S rRNA m5C1962 methyltransferase [Dialister
           microaerophilus UPII 345-E]
 gi|313119248|gb|EFR42448.1| putative 23S rRNA m5C1962 methyltransferase [Dialister
           microaerophilus UPII 345-E]
          Length = 404

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 15/121 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            A       ++L+ +   G F+L  A+     V A++I++ +V+ A ++   N + N+K+
Sbjct: 223 AAGNIAKGKNVLDCFTHTGAFALNAAKSGAKSVTAIDISQHAVDMATHHAEINELENMKV 282

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDI-HSYRFKTIFVDPPRSGLDDATVGMV-QAYPHIL 319
           V+               F+ L + D  H +++  I +DPP      +TV    + Y  I 
Sbjct: 283 VKADV------------FDYLTEQDKNHEHKYDYIILDPPAFTKSGSTVHSAFRGYKEIN 330

Query: 320 Y 320
           Y
Sbjct: 331 Y 331


>gi|134102544|ref|YP_001108205.1| methyltransferase (methylase) [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915167|emb|CAM05280.1| possible methyltransferase (methylase) [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 208

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +   + +AT+     +L+LY G+G   L  L+R       VE  + +V+  R N +
Sbjct: 43  VREALFSALESATELAGARVLDLYGGSGALGLEALSRGAAHATFVESDRRAVQLLRRNAS 102

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIF 296
           A    +V + +   +    +   E     L D   D+ + R   + 
Sbjct: 103 ALGFRDVSVAQGKVETVLASAAGEPFDVVLADPPYDVDAARLDQVL 148


>gi|84626018|ref|YP_453390.1| oxidoreductase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84369958|dbj|BAE71116.1| oxidoreductase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 388

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 16/109 (14%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+    +G    +L+L C  G F++   AR    VL V+I +  +  A+ N   N+V  
Sbjct: 208 QWLSEQVEGKT--VLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVR- 264

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            K V+               F  L+D      +F  + +DP +   D A
Sbjct: 265 PKFVQAD------------IFPWLRDASNRGEQFDVVILDPAKMTRDRA 301


>gi|125972799|ref|YP_001036709.1| hypothetical protein Cthe_0277 [Clostridium thermocellum ATCC
           27405]
 gi|125713024|gb|ABN51516.1| conserved hypothetical protein [Clostridium thermocellum ATCC
           27405]
          Length = 291

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 61/150 (40%), Gaps = 27/150 (18%)

Query: 167 VDERLTVAGRTLIYRQIENSFT-------QPNAGIN-VHMLEWVLAATKGIQGDLLELYC 218
           + ER T++   L +      F        Q    +N   M++ + +A++ I  ++L L+ 
Sbjct: 71  LPERWTISYHDLSFYIEPTGFKHTGLFPEQV---VNWKWMIDKIRSASRNI--NVLNLFA 125

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRE 276
             G  ++  A     V  V+ AK  V+ A+ N+A + + +  V+ +     +F Q  +R 
Sbjct: 126 YTGGATVACAYANASVCHVDAAKGMVQRAKENLALSGLADRSVRFIVDDVIKFVQREKR- 184

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                         ++  + +DPP  G   
Sbjct: 185 -----------RGRQYDAVIMDPPSYGRGP 203


>gi|318058889|ref|ZP_07977612.1| hypothetical protein SSA3_13145 [Streptomyces sp. SA3_actG]
          Length = 213

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 192 AGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
              + H+L   L     G    +L+L  G+G  +L+ AR   RV A +++  +V +AR N
Sbjct: 4   PQADTHLLARALGTEPIGPHTHVLDLCTGSGALALLAARRGARVCATDLSWRAVVSARIN 63

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            A      V+++R       +  R +        +    Y         PR G   A   
Sbjct: 64  AARAG-QRVRVLRGDLSGPVRGQRFDLV------VSNPPYVPDPAARTGPRRGRSHAASL 116

Query: 311 MVQAYP 316
              A P
Sbjct: 117 AWDAGP 122


>gi|291007089|ref|ZP_06565062.1| methyltransferase (methylase) [Saccharopolyspora erythraea NRRL
           2338]
          Length = 193

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +   + +AT+     +L+LY G+G   L  L+R       VE  + +V+  R N +
Sbjct: 28  VREALFSALESATELAGARVLDLYGGSGALGLEALSRGAAHATFVESDRRAVQLLRRNAS 87

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIF 296
           A    +V + +   +    +   E     L D   D+ + R   + 
Sbjct: 88  ALGFRDVSVAQGKVETVLASAAGEPFDVVLADPPYDVDAARLDQVL 133


>gi|168334727|ref|ZP_02692859.1| ribosomal protein L11 methyltransferase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 312

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 92/284 (32%), Gaps = 21/284 (7%)

Query: 46  RAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF 105
             EF I      +  I +         ++   P    IN    +       E LL A + 
Sbjct: 3   CIEFKIETTTAAVEAISYFIADTLEGGVEICDPKD-AINQDKTQTWYDFIDESLLDADMN 61

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKICLDR 164
            + ++ +  ++ I    Y   +          L   A      +I     AN+ K     
Sbjct: 62  TV-FVKAYFNKGINIEEYKEKISAELEHIKEFLDVGAAQIIVSEIPEEKWANEWKKYYKT 120

Query: 165 DYVDERLTVAGRTLIYRQIEN----------SF---TQPNAGINVHMLEWVLAATKGIQG 211
             + +++ +    L Y    +          +F   T     + V +LE           
Sbjct: 121 FNITDKIVIKPSWLAYDVAGDEIVIEMDPGMAFGSGTHETTSMCVQLLEK----YLKKSN 176

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFT 270
            +L++  G+G   +V A+    VL V+I   SV+ A  N+A N   +++ +V+    E  
Sbjct: 177 RVLDVGTGSGILGIVAAKLGASVLGVDIDPMSVKVAIENVAINGVADDMAVVQGDLLEVV 236

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                    N + D+ I         + P    +    +   +A
Sbjct: 237 AEKADIVISNIIADVIIVLAAQVRQVLKPGGVWIASGIIDTKKA 280


>gi|240145244|ref|ZP_04743845.1| methyltransferase [Roseburia intestinalis L1-82]
 gi|257202707|gb|EEV00992.1| methyltransferase [Roseburia intestinalis L1-82]
          Length = 403

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G F+L         V  ++I++ +V+ A  N   N + 
Sbjct: 211 YNRLAMQRICKGKKVLDCFTHMGTFALNAGIAGAADVTGLDISEYAVQQANENARRNGLE 270

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316
           +           T   R     + L  +     ++  + +DPP            ++ Y 
Sbjct: 271 D-----------TVHFRCANVLDELPKLAQSGEQYDVVILDPPAFTKSRQATKNAIKGYR 319

Query: 317 HI 318
            I
Sbjct: 320 EI 321


>gi|242399436|ref|YP_002994861.1| Met-10+ like protein [Thermococcus sibiricus MM 739]
 gi|242265830|gb|ACS90512.1| Met-10+ like protein [Thermococcus sibiricus MM 739]
          Length = 333

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 35/87 (40%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +++ G G +S++LA+    V A ++   ++     N   N V N+  +    ++    
Sbjct: 188 VFDMFAGVGPYSILLAKKVKMVFACDVNPIAIRYLEENKKLNKVENLIPILGDVRKVAGQ 247

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDP 299
           ++ +R    L        +   I V  
Sbjct: 248 VKADRVIMNLPKFAHEFLKEAMISVRK 274


>gi|30017517|gb|AAP12939.1| putative PRIP-interacting protein, 5'-partial [Oryza sativa
           Japonica Group]
          Length = 282

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            G +++ + G G  ++  A     V+A++I    ++ A++N     V +++  VR     
Sbjct: 104 AGIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQHNATVYGVHDHIDFVRGDFIH 163

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKT 294
               ++ E  F           +   
Sbjct: 164 VAPRLKGETVFMSPPWGGPDYAKVDV 189


>gi|294787522|ref|ZP_06752775.1| putative methyltransferase small domain protein [Parascardovia
           denticolens F0305]
 gi|315226897|ref|ZP_07868685.1| 16S rRNA methyltransferase [Parascardovia denticolens DSM 10105]
 gi|294484878|gb|EFG32513.1| putative methyltransferase small domain protein [Parascardovia
           denticolens F0305]
 gi|315121029|gb|EFT84161.1| 16S rRNA methyltransferase [Parascardovia denticolens DSM 10105]
          Length = 250

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 15/108 (13%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
              A      + L+L CG G  SL LAR +    V A+++ + +VE  + N   NHV +V
Sbjct: 58  ADEAEGHRVKNCLDLGCGWGPISLALAREYPQATVWALDVNERAVELTKANARRNHVASV 117

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDD 306
           +    +++       +               RF  I+ +PP R G ++
Sbjct: 118 Q--AGTAESLAADYGQA----------WEEARFDLIWSNPPIRVGKEE 153


>gi|84500440|ref|ZP_00998689.1| methyltransferase, UbiE/COQ5 family protein [Oceanicola batsensis
           HTCC2597]
 gi|84391393|gb|EAQ03725.1| methyltransferase, UbiE/COQ5 family protein [Oceanicola batsensis
           HTCC2597]
          Length = 207

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N   +   +    A+  G    +LE+ CG G  +L LA H   VLA +++   ++ AR  
Sbjct: 21  NTDQHERTVARA-ASYLGPDARVLEVGCGTGTIALKLAPHAAVVLATDLSGALLDIARQR 79

Query: 251 IAANHVNNVKIVRMSSKEFTQA 272
            A   V NV   R +  +  + 
Sbjct: 80  AADAGVENVGFARHAVDDLPEG 101


>gi|325967647|ref|YP_004243839.1| methyltransferase [Vulcanisaeta moutnovskia 768-28]
 gi|323706850|gb|ADY00337.1| methyltransferase [Vulcanisaeta moutnovskia 768-28]
          Length = 214

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 23/125 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                  I   +L+L CG G F++  A     +V+ ++I   ++  AR + +   ++NV 
Sbjct: 49  AYMRNYLINARVLDLGCGTGRFAIAAALMGVRQVICIDIDPEALAIARESASKYGLSNVD 108

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVGMVQAY 315
            +    +                       RF  +F +PP       GLD   +     +
Sbjct: 109 FITNDIRNMA-----------------IMGRFDVVFQNPPFGIQSERGLDMKFLATAINH 151

Query: 316 PHILY 320
             I+Y
Sbjct: 152 SGIVY 156


>gi|194705956|gb|ACF87062.1| unknown [Zea mays]
 gi|195638364|gb|ACG38650.1| S-adenosylmethionine-dependent methyltransferase [Zea mays]
          Length = 211

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 24/136 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARY 249
             I   ML     +   I G ++ +  CG G  ++  A    + VL ++I   S+E A+ 
Sbjct: 30  PHIASRMLYMAENSFNDITGKVVADFGCGCGTLAVASALLDAEHVLGIDIDPQSLELAQE 89

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
           N A   ++                  +  ++ +K++++      T+ ++PP    R+G D
Sbjct: 90  NAADLELD-----------------IDLVWSDIKNLNLKGVHVDTVVMNPPFGTRRNGAD 132

Query: 306 DATVGM-VQAYPHILY 320
              + M +Q     +Y
Sbjct: 133 MEFLSMALQVASQAVY 148


>gi|42571865|ref|NP_974023.1| RNA binding [Arabidopsis thaliana]
 gi|332194958|gb|AEE33079.1| S-adenosylmethionine-dependent methyltransferase domain-containing
           protein [Arabidopsis thaliana]
          Length = 454

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 28/129 (21%)

Query: 211 GDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSK 267
             +L+L C +G F+L  AR     V+ ++ + P++E AR N+  N+++   V   +  S 
Sbjct: 279 KRVLDLCCYSGGFALNAARGGATSVIGIDSSLPALELARENVILNNMDPEKVVFFKQDST 338

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327
           EF +      E             +  + +DPP+          +     +L+   N   
Sbjct: 339 EFMKGALSREE------------TWDIVILDPPK----------LAPRKKVLH---NASG 373

Query: 328 LCRDLSILS 336
           + R+L+ L+
Sbjct: 374 MYRNLNSLA 382


>gi|309776642|ref|ZP_07671618.1| methyltransferase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915602|gb|EFP61366.1| methyltransferase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 400

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            VL         +++ +   G F+L  A  +  +V+AV++++ +++ A  N   N + N 
Sbjct: 219 RVLLREMAQGKRVMDCFSHTGGFALNAAYGNAQQVVAVDVSQTALDQAYENAKLNQLENR 278

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH 317
           +  V+    ++  A                  +F  I +DPP       T+      Y  
Sbjct: 279 ISFVKADVFKYLDA--------------CEEGQFDIIILDPPAFTKSRRTIDHAYNGYKR 324

Query: 318 I 318
           I
Sbjct: 325 I 325


>gi|255280074|ref|ZP_05344629.1| Met-10+ like-protein [Bryantella formatexigens DSM 14469]
 gi|255269165|gb|EET62370.1| Met-10+ like-protein [Bryantella formatexigens DSM 14469]
          Length = 494

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 19/214 (8%)

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           F+++     S++  V L+  +L     +E   +L +A    + +I+L+G      I L +
Sbjct: 249 FRLEVRAQLSNEQKVDLV-KKLARALEKESGRQLLNAPGGYEIEIRLVGNREGRFIPLLK 307

Query: 165 DYVDERLTVAGRTLIYR--QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            Y     T+  R   YR   +  S    NA + ++M++  L         +L+ +CG G 
Sbjct: 308 LY-----TIKDRRFAYRAGSLPVSIAPVNAALIMYMVKEYLRE----GARVLDPFCGVGT 358

Query: 223 FSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN----NVKIVRMSSKE-FTQAMRR 275
             +   +      +  V+I + +V+ AR N A  HVN    N      + ++ F + +  
Sbjct: 359 MLIERRQVVTPGTLYGVDILEEAVQKARRNSALAHVNAHYINRDFFDFTHEKPFDEIVTN 418

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
                RL+++D  +  +       P+     AT+
Sbjct: 419 LPAAGRLRNLDNVAALYDRFLEYIPKVARRGATI 452


>gi|288958306|ref|YP_003448647.1| ubiquinone/menaquinone biosynthesis methyltransferase ubi
           [Azospirillum sp. B510]
 gi|288910614|dbj|BAI72103.1| ubiquinone/menaquinone biosynthesis methyltransferase ubi
           [Azospirillum sp. B510]
          Length = 254

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +L+L CG G+ S   A H   V+AV++    +EA   N A   + N+   +  ++  
Sbjct: 44  DARVLDLGCGGGHVSYRAAPHVAEVVAVDLTPEMLEAVARNAAERGLTNIATRQAPAERL 103


>gi|282856081|ref|ZP_06265367.1| SAM-dependent methyltransferase [Pyramidobacter piscolens W5455]
 gi|282586102|gb|EFB91384.1| SAM-dependent methyltransferase [Pyramidobacter piscolens W5455]
          Length = 409

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 6/129 (4%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
              AA      D+L+ +   G+F+L  +      V AV+++  ++E AR+N A N  +  
Sbjct: 225 RAAAARLCAGLDVLDCFTHTGSFALNAVRGGAAHVTAVDVSAGALEMARHNAALNGCLGK 284

Query: 259 VKIVRMSSKEFTQAMR-REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +  +     +    M  R R    +  +D  ++      V     G  +  +  ++  P 
Sbjct: 285 MDFIAADVFDLLSDMASRGRGEYGMIILDPPAFAKSRRSVRDAARGYKEINLKAMKLLPR 344

Query: 318 ILYI---SC 323
             Y+   SC
Sbjct: 345 GGYLATASC 353


>gi|308171997|ref|YP_003918702.1| ribosomal RNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307604861|emb|CBI41232.1| ribosomal RNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|328551807|gb|AEB22299.1| ribosomal RNA methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328910068|gb|AEB61664.1| ribosomal RNA methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 201

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I GD L+  CG G   L LA  F    V  +++ + +VE +  N   N + NV+I + 
Sbjct: 56  PEIDGDFLDAGCGYGPIGLSLAGEFTDRTVHMIDVNERAVELSNENAEKNGIKNVRIYQS 115

Query: 265 S 265
            
Sbjct: 116 D 116


>gi|254172185|ref|ZP_04878861.1| methyltransferase small [Thermococcus sp. AM4]
 gi|214034081|gb|EEB74907.1| methyltransferase small [Thermococcus sp. AM4]
          Length = 396

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 14/111 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-V 259
            L         +L+++   G F++  A    D V+AV+ +  ++   + N   N V + +
Sbjct: 210 ALEKYVKPGMRVLDVFTYTGGFAMHAAVAGADEVVAVDKSPWAINMVKENAKLNGVEDKM 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           K +  S+            F  ++++      F  + +DPP     +  + 
Sbjct: 270 KYIVGSA------------FPVMEEMIKRGEEFDIVILDPPAFVQHEKDLK 308


>gi|167461259|ref|ZP_02326348.1| possible 16S rRNA methyltransferase [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381135|ref|ZP_08055138.1| ribosomal RNA methyltransferase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154711|gb|EFX46982.1| ribosomal RNA methyltransferase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 199

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 20/105 (19%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A        +L++ CG G   L  A+      V  ++I + +VE A+ N   NH++NV I
Sbjct: 52  AMELPKDARILDVGCGYGPIGLTAAKLCPAGHVTLIDINERAVELAKLNARNNHISNVTI 111

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
           ++ +  E                  +   +F  I  +PP R+G  
Sbjct: 112 LQSNLFE-----------------HVRDQKFDVILTNPPIRAGKQ 139


>gi|154684624|ref|YP_001419785.1| YbxB [Bacillus amyloliquefaciens FZB42]
 gi|154350475|gb|ABS72554.1| YbxB [Bacillus amyloliquefaciens FZB42]
          Length = 201

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I GD L+  CG G   L LA  F    V  +++ + +VE +  N   N + NV+I + 
Sbjct: 56  PEIDGDFLDAGCGYGPIGLSLAGEFTDRTVHMIDVNERAVELSNENAEKNGIKNVRIYQS 115

Query: 265 S 265
            
Sbjct: 116 D 116


>gi|154509065|ref|ZP_02044707.1| hypothetical protein ACTODO_01582 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798699|gb|EDN81119.1| hypothetical protein ACTODO_01582 [Actinomyces odontolyticus ATCC
           17982]
          Length = 204

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 19/128 (14%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFS--LVLARHFDRVLAVEIAKPSVEAARYNIA 252
              +LE  +A      G  L+L CG G  +  + L      V AV++   +V+  + N  
Sbjct: 47  TRQLLE--IAPDLPEDGTFLDLGCGWGPIATIMSLESPNADVWAVDVNSRAVDLTQRNAQ 104

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +N    V+   + ++E   + +                RF  I+ +PP R G D     +
Sbjct: 105 SNGAKGVR--ALKAEEALTSSQE------------SDTRFDVIWSNPPVRVGKDAMHEML 150

Query: 312 VQAYPHIL 319
           +     ++
Sbjct: 151 LAWLGRLI 158


>gi|71281920|ref|YP_268972.1| hypothetical protein CPS_2247 [Colwellia psychrerythraea 34H]
 gi|123632632|sp|Q482P5|RLMI_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|71147660|gb|AAZ28133.1| conserved hypothetical protein [Colwellia psychrerythraea 34H]
          Length = 396

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 15/105 (14%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV--N 257
            + A        +L  +     F+L  A +    V+ V++++ +++    N+A N +   
Sbjct: 212 RLAAGKFAKDKTVLNCFSYTSTFALHCAANNAKEVINVDVSQDALDMGERNLALNGLSDA 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           NV  V+   ++  + +RR RE  R          F  I +DPP+ 
Sbjct: 272 NVSFVK---EDVFKLLRRYREEKR---------TFDMIILDPPKF 304


>gi|45359164|ref|NP_988721.1| putative RNA methylase [Methanococcus maripaludis S2]
 gi|45048039|emb|CAF31157.1| Putative RNA methylase [Methanococcus maripaludis S2]
          Length = 260

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +  +      + +L  G+G  +++ A++   V AVE+   + E  R NI  N+ +N+ +
Sbjct: 27  AVETSVKPGDIVFDLGTGSGILAMIAAKNAKHVYAVELDPITTEYTRENIKENNYDNITV 86

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           +   +  +  + + +     L D  + +     +       GL      ++   P  +Y 
Sbjct: 87  IEDDAAYYPFSEKADVVIAELLDTGLITEPQVPVLNSIIEKGLLKEGGLII---PEEVYN 143

Query: 322 S 322
           S
Sbjct: 144 S 144


>gi|325282111|ref|YP_004254653.1| Ribosomal protein L11 methyltransferase [Odoribacter splanchnicus
           DSM 20712]
 gi|324313920|gb|ADY34473.1| Ribosomal protein L11 methyltransferase [Odoribacter splanchnicus
           DSM 20712]
          Length = 283

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 191 NAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAAR 248
           +      ML  +L   + I G  +L++ CG G  S++ A+     +  ++I + +   A 
Sbjct: 127 HHSTTALMLRTILDNKERITGKRVLDMGCGTGILSILAAKTGAREITGIDIDEWAYNNAM 186

Query: 249 YNIAANHVNNVKIVRMSSK 267
            NI AN +NN+ I    ++
Sbjct: 187 ENIRANGLNNITIKIGDAR 205


>gi|255035397|ref|YP_003086018.1| Methyltransferase type 11 [Dyadobacter fermentans DSM 18053]
 gi|254948153|gb|ACT92853.1| Methyltransferase type 11 [Dyadobacter fermentans DSM 18053]
          Length = 274

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V         D+L+L CG+G  +L  AR    V  V+IA+  V A      A  + N+  
Sbjct: 32  VAKLGVKKDMDVLDLGCGDGTTALPSARLGANVQGVDIARNLVAAGNARAQAEGLTNITF 91

Query: 262 VRMSS 266
               +
Sbjct: 92  REGDA 96


>gi|310644213|ref|YP_003948972.1| methyltransferase small [Paenibacillus polymyxa SC2]
 gi|309249164|gb|ADO58731.1| Methyltransferase small [Paenibacillus polymyxa SC2]
          Length = 204

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 20/107 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + A        +L++ CG G   L  A       V  V+I + +V+ A  N   N + NV
Sbjct: 50  IEAMQLPTNASVLDVGCGYGPIGLTAATLVPDGHVTMVDINERAVQLAIENAERNGIKNV 109

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
            I +                      ++   RF  I  +PP R+G +
Sbjct: 110 TIKQSDL-----------------FAEVQHERFDVILTNPPIRAGKE 139


>gi|258614611|ref|ZP_05712381.1| hemK protein [Enterococcus faecium DO]
 gi|260560330|ref|ZP_05832506.1| modification methylase HemK [Enterococcus faecium C68]
 gi|293563061|ref|ZP_06677527.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1162]
 gi|294623634|ref|ZP_06702472.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium U0317]
 gi|314947686|ref|ZP_07851095.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0082]
 gi|260073675|gb|EEW62001.1| modification methylase HemK [Enterococcus faecium C68]
 gi|291596960|gb|EFF28173.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium U0317]
 gi|291604975|gb|EFF34443.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecium E1162]
 gi|313645927|gb|EFS10507.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0082]
          Length = 279

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLI 179
           L +   +++   E   RL       +  ++L+   +  +  L   D+ D RL V   TLI
Sbjct: 40  LDWLLHMNEEISEEEQRL------IETDLRLLLADHPPQYLLGYADFYDHRLKVTEATLI 93

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAV 237
            R                ++EW L  T G+  +++++  G G  ++ L  AR    + AV
Sbjct: 94  PRPE-----------TEELVEWCLDETPGVPLEVIDIGTGTGAIAISLKAARKNWHISAV 142

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           ++++ ++E A+ N        +      +                    +   +F  I  
Sbjct: 143 DLSEEALEVAKENAQKEGTK-ISFYHGDTL-----------------GPVMDQQFDVIIS 184

Query: 298 DPP 300
           +PP
Sbjct: 185 NPP 187


>gi|314937738|ref|ZP_07845060.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133a04]
 gi|314942364|ref|ZP_07849211.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133C]
 gi|314952117|ref|ZP_07855136.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133A]
 gi|314992372|ref|ZP_07857804.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133B]
 gi|314997441|ref|ZP_07862388.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133a01]
 gi|313588450|gb|EFR67295.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133a01]
 gi|313593097|gb|EFR71942.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133B]
 gi|313595736|gb|EFR74581.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133A]
 gi|313598877|gb|EFR77722.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133C]
 gi|313642876|gb|EFS07456.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecium
           TX0133a04]
          Length = 279

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLI 179
           L +   +++   E   RL       +  ++L+   +  +  L   D+ D RL V   TLI
Sbjct: 40  LDWLLHMNEEISEEEQRL------IETDLRLLLADHPPQYLLGYADFYDHRLKVTEATLI 93

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAV 237
            R                ++EW L  T G+  +++++  G G  ++ L  AR    + AV
Sbjct: 94  PRPE-----------TEELVEWCLDETPGVPLEVIDIGTGTGAIAISLKAARKNWHISAV 142

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           ++++ ++E A+ N        +      +                    +   +F  I  
Sbjct: 143 DLSEEALEVAKENAQKEGTK-ISFYHGDTL-----------------GPVMDQQFDVIIS 184

Query: 298 DPP 300
           +PP
Sbjct: 185 NPP 187


>gi|326937895|gb|AEA13791.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 199

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 54  QMPDIKGDILDVGCGYGPIGLSLAKEFQGCEVHMVDVNERALGLAKENAANNRIENIRIF 113

Query: 263 RMSSKE 268
           + S  E
Sbjct: 114 QSSVYE 119


>gi|222479168|ref|YP_002565405.1| protein of unknown function Met10 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452070|gb|ACM56335.1| protein of unknown function Met10 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 329

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++++ G G +++ +A     V+A ++ + +VE  R N   N   + V  +    +    
Sbjct: 180 VIDMFAGVGPYAVPMAARGAEVVACDLNERAVEYLRENAERNGVADRVTAIAGDVRGIAD 239

Query: 272 AMR 274
           A  
Sbjct: 240 AYA 242


>gi|298674302|ref|YP_003726052.1| hypothetical protein Metev_0330 [Methanohalobium evestigatum
           Z-7303]
 gi|298287290|gb|ADI73256.1| protein of unknown function Met10 [Methanohalobium evestigatum
           Z-7303]
          Length = 341

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 24/218 (11%)

Query: 68  KERMRIDYFMP----GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           K+ +  ++F         ++     E+M      P     L  I +     D AIV    
Sbjct: 49  KQPVNSEFFEIKQVSNDFIVGDYEFELME---KSPTFEDLLGYIPHYEIVGDIAIVDEDD 105

Query: 124 H---RLLDDAWRECAIRLRDALHARKYQIQLIGRA---NKTKICLDRDYVDERLTVAGRT 177
               R + DA     IRL   +         IG        K+    D  +      G  
Sbjct: 106 ESEARKIADA----IIRLHPNIKTVVGTTAPIGGEYRVRNVKVIAGEDRTETIHKEHGCR 161

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVL 235
            +    E  FT     ++    E VL+        +++++ G G +S+++A+     +V+
Sbjct: 162 YVVDIAEAYFT---PRLSTE-RERVLSLISSRDL-VVDMFAGVGPYSILIAKKVDVKKVI 216

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           A++    +V   R NI  N VNNV  +   + +  Q +
Sbjct: 217 AIDKNPTAVRFLRRNIELNSVNNVVAIEGDAGDKEQEL 254


>gi|326472516|gb|EGD96525.1| hypothetical protein TESG_03965 [Trichophyton tonsurans CBS 112818]
          Length = 294

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 + + + A  +G     L+L CG+G  +  LA  F +V  V  +   +E A  N+
Sbjct: 19  PEYPQRLYDMICAYHRGGYDTCLDLGCGHGLVARFLAPKFKKVYGVNPSAGMIEQA-KNL 77

Query: 252 AANHVNNVKIVRMSSKEF 269
                 NV+ V+ +++  
Sbjct: 78  TKEQ--NVEFVQAAAESL 93


>gi|228956542|ref|ZP_04118338.1| hypothetical protein bthur0005_880 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228803107|gb|EEM49929.1| hypothetical protein bthur0005_880 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 213

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 68  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 167


>gi|228919051|ref|ZP_04082430.1| hypothetical protein bthur0011_870 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229041006|ref|ZP_04189769.1| hypothetical protein bcere0027_870 [Bacillus cereus AH676]
 gi|228727303|gb|EEL78497.1| hypothetical protein bcere0027_870 [Bacillus cereus AH676]
 gi|228840576|gb|EEM85838.1| hypothetical protein bthur0011_870 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 213

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 68  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 167


>gi|229107787|ref|ZP_04237423.1| hypothetical protein bcere0018_880 [Bacillus cereus Rock1-15]
 gi|228675636|gb|EEL30844.1| hypothetical protein bcere0018_880 [Bacillus cereus Rock1-15]
          Length = 199

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 54  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 114 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 153


>gi|229142907|ref|ZP_04271348.1| hypothetical protein bcere0012_880 [Bacillus cereus BDRD-ST24]
 gi|296500935|ref|YP_003662635.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           BMB171]
 gi|228640528|gb|EEK96917.1| hypothetical protein bcere0012_880 [Bacillus cereus BDRD-ST24]
 gi|296321987|gb|ADH04915.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus thuringiensis
           BMB171]
          Length = 199

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 54  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 114 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 153


>gi|218231310|ref|YP_002364950.1| ybxB protein [Bacillus cereus B4264]
 gi|218159267|gb|ACK59259.1| ybxB protein [Bacillus cereus B4264]
          Length = 199

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 54  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 114 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 153


>gi|207744117|ref|YP_002260509.1| protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum
           IPO1609]
 gi|206595521|emb|CAQ62448.1| protein-l-isoaspartate o-methyltransferase [Ralstonia solanacearum
           IPO1609]
          Length = 216

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         D+LE+  G+G  + +LA     V  V+IA   V  AR N+
Sbjct: 63  PRVEARVLQELAVRKHE---DVLEVGAGSGYMAALLAHRGRHVTTVDIAPELVAFARDNL 119

Query: 252 AANHVNNVKIVRMSSK 267
           A N V N  +   ++ 
Sbjct: 120 ARNGVTNADVAEGNAA 135


>gi|289662295|ref|ZP_06483876.1| oxidoreductase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 388

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+     G    +L+L C  G F++   AR    VL V+I +  +  A+ N   N+V  
Sbjct: 208 QWLSEQVAGKT--VLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVR- 264

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K V+               F  L+D      +F  + +DP
Sbjct: 265 PKFVQAD------------IFPWLRDASHRGDQFDVVILDP 293


>gi|269929312|ref|YP_003321633.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269788669|gb|ACZ40811.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 286

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A       +L+L CG G  ++ LA+    VLA +++   +  AR   A   V   + V
Sbjct: 36  LDAAFHPGDRVLDLGCGTGEDAVRLAQRGIDVLATDVSAGMIAVAREKAADAGV--AERV 93

Query: 263 RMSSKEFTQAMRREREFNRLKD-IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
            ++  +  +         R  D ID     F  +   P R  L       ++    ++ +
Sbjct: 94  HLAQVDLREHPLSLPASWRGPDGIDGSFSSFGALNCLPDRRRLASTLAAWIRPGGRLVLV 153


>gi|228937403|ref|ZP_04100049.1| hypothetical protein bthur0008_880 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970289|ref|ZP_04130948.1| hypothetical protein bthur0003_870 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976859|ref|ZP_04137271.1| hypothetical protein bthur0002_870 [Bacillus thuringiensis Bt407]
 gi|228782829|gb|EEM30995.1| hypothetical protein bthur0002_870 [Bacillus thuringiensis Bt407]
 gi|228789398|gb|EEM37318.1| hypothetical protein bthur0003_870 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822236|gb|EEM68218.1| hypothetical protein bthur0008_880 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 213

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 68  QMPDIKGDILDVGCGYGPIGLSLAKEFQGCEVHMVDVNERALGLAKENAANNRIENIRIF 127

Query: 263 RMSSKE 268
           + S  E
Sbjct: 128 QSSVYE 133


>gi|229159274|ref|ZP_04287298.1| hypothetical protein bcere0009_870 [Bacillus cereus R309803]
 gi|228624166|gb|EEK80968.1| hypothetical protein bcere0009_870 [Bacillus cereus R309803]
          Length = 158

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+GD+L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 13  QMPDIKGDILDVGCGYGPIGLSLAKEFQGCNVHMVDVNERALGLAKENAANNRIENIRIF 72

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 73  QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 112


>gi|88861345|ref|ZP_01135975.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Pseudoalteromonas tunicata D2]
 gi|88816611|gb|EAR26436.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Pseudoalteromonas tunicata D2]
          Length = 281

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 13/135 (9%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W + A+  +      +   + +       I   R++   +L V+  TLI R         
Sbjct: 46  WPDKALTAQQQTQFEQAVARRLAGEPIAHIIGYREFWSLKLKVSPATLIPRPD------- 98

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
                  ++E  L+        +L+L  G G  +L LA  +   +V   +  + +V  A+
Sbjct: 99  ----TETLVEHALSLALPEHAKVLDLGTGTGAIALALASEQFNWQVTGCDRIEDAVVLAQ 154

Query: 249 YNIAANHVNNVKIVR 263
            N AA  + N + V+
Sbjct: 155 TNQAALEIKNCRFVQ 169


>gi|317126138|ref|YP_004100250.1| methyltransferase type 11 [Intrasporangium calvum DSM 43043]
 gi|315590226|gb|ADU49523.1| Methyltransferase type 11 [Intrasporangium calvum DSM 43043]
          Length = 266

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 17/138 (12%)

Query: 199 LEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+L+  +    D+ L++  G G  S  LA    RV+AV+  +  +E  R  + A    
Sbjct: 33  LPWLLSHVEPRPDDVVLDVAAGTGIVSRALAPDAARVVAVDSTEAMIEQGRSRVVAEGHL 92

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT-IFVDPPRSGLDDATVGMVQAYP 316
           N+  VR ++++              ++  +   RF    F DPPR+      V +++   
Sbjct: 93  NLGFVRGAAEDL---------PFSNQEFSLVVTRFSLHHFADPPRA--LREMVRVLRRAG 141

Query: 317 HILYI----SCNPDSLCR 330
            ++ +    S +P    R
Sbjct: 142 RLVVMDLVASTDPTIAAR 159


>gi|239928710|ref|ZP_04685663.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291437034|ref|ZP_06576424.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291339929|gb|EFE66885.1| DNA methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 195

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 15/114 (13%)

Query: 201 WVLAATKGIQGD-LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           W       + G+ +L+LY G+G   L  L+R     L VE    +V   R N  +  +  
Sbjct: 37  WQALLGGPLDGERVLDLYAGSGAVGLEALSRGAGHALLVEADARAVRTVRDNARSLGLPG 96

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            ++    +++  +                    +  +F+DPP +  DD    ++
Sbjct: 97  AEVRSGKAEQVIRTAP-------------PDEPYDLVFLDPPYAVSDDDLREIL 137


>gi|206578511|ref|YP_002237909.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Klebsiella pneumoniae 342]
 gi|206567569|gb|ACI09345.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Klebsiella pneumoniae 342]
          Length = 282

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA    +   +L+L  G G  +L LA  R    V AV++   +V  A  N A   
Sbjct: 98  LVEQALARLPAVPCRILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAAHLD 157

Query: 256 VNNVKIVRMS 265
           + NV I +  
Sbjct: 158 IANVTIRQSD 167


>gi|149914784|ref|ZP_01903314.1| methyltransferase, UbiE/COQ5 family protein [Roseobacter sp.
           AzwK-3b]
 gi|149811577|gb|EDM71412.1| methyltransferase, UbiE/COQ5 family protein [Roseobacter sp.
           AzwK-3b]
          Length = 207

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A      LE   A   G Q D+LEL CG G  +L LA H  R+   + +   ++ A   +
Sbjct: 22  AAAYETTLERTAAHLTGAQ-DVLELGCGTGATALRLAAHVGRLTGCDTSSEMIQIAGERL 80

Query: 252 AANHVNNVKIVRMSSKE 268
           A +   NV   R  + +
Sbjct: 81  AEDGAQNVVFRRCDAFD 97


>gi|69249627|ref|ZP_00605025.1| Modification methylase HemK [Enterococcus faecium DO]
 gi|257880057|ref|ZP_05659710.1| modification methylase HemK [Enterococcus faecium 1,230,933]
 gi|257882293|ref|ZP_05661946.1| modification methylase HemK [Enterococcus faecium 1,231,502]
 gi|257891148|ref|ZP_05670801.1| modification methylase HemK [Enterococcus faecium 1,231,410]
 gi|257893962|ref|ZP_05673615.1| modification methylase HemK [Enterococcus faecium 1,231,408]
 gi|68194106|gb|EAN08646.1| Modification methylase HemK [Enterococcus faecium DO]
 gi|257814285|gb|EEV43043.1| modification methylase HemK [Enterococcus faecium 1,230,933]
 gi|257817951|gb|EEV45279.1| modification methylase HemK [Enterococcus faecium 1,231,502]
 gi|257827508|gb|EEV54134.1| modification methylase HemK [Enterococcus faecium 1,231,410]
 gi|257830341|gb|EEV56948.1| modification methylase HemK [Enterococcus faecium 1,231,408]
          Length = 290

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 38/183 (20%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTVAGRTLI 179
           L +   +++   E   RL       +  ++L+   +  +  L   D+ D RL V   TLI
Sbjct: 51  LDWLLHMNEEISEEEQRL------IETDLRLLLADHPPQYLLGYADFYDHRLKVTEATLI 104

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAV 237
            R                ++EW L  T G+  +++++  G G  ++ L  AR    + AV
Sbjct: 105 PRPE-----------TEELVEWCLDETPGVPLEVIDIGTGTGAIAISLKAARKNWHISAV 153

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           ++++ ++E A+ N        +      +                    +   +F  I  
Sbjct: 154 DLSEEALEVAKENAQKEGTK-ISFYHGDTL-----------------GPVMDQQFDVIIS 195

Query: 298 DPP 300
           +PP
Sbjct: 196 NPP 198


>gi|323180731|gb|EFZ66274.1| 23S rRNA (uracil-5-)-methyltransferase rumA domain protein
           [Escherichia coli 1180]
          Length = 54

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
             +L+L+CG GNF+L LA+    V+ VE   P+ E
Sbjct: 1   DRVLDLFCGMGNFTLPLAKQAASVVGVEGVPPAPE 35


>gi|289667660|ref|ZP_06488735.1| oxidoreductase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 388

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+     G    +L+L C  G F++   AR    VL V+I +  +  A+ N   N+V  
Sbjct: 208 QWLSEQVAGKT--VLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVR- 264

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K V+               F  L+D      +F  + +DP
Sbjct: 265 PKFVQAD------------IFPWLRDASHRGDQFDVVILDP 293


>gi|269797258|ref|YP_003311158.1| methyltransferase type 11 [Veillonella parvula DSM 2008]
 gi|269093887|gb|ACZ23878.1| Methyltransferase type 11 [Veillonella parvula DSM 2008]
          Length = 273

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +   L++       +L++  G G+F++  A+H   V A+E +K  V   + N     V N
Sbjct: 57  VYAALSSVLTPDSSMLDIGAGPGSFTIPFAQHIKSVTAIEPSKGMVAVFKENAKELGVEN 116

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             I+    +E  Q + ++  F+   D+   S          PR
Sbjct: 117 FNII----EEMVQDLPQDGSFDSQFDVVAISLVLWMFPDVWPR 155


>gi|322832985|ref|YP_004213012.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Rahnella sp. Y9602]
 gi|321168186|gb|ADW73885.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Rahnella sp. Y9602]
          Length = 289

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L LA  R   +V  V++   +V  A++N    +
Sbjct: 98  LVEQALIRLPSQPVSILDLGTGTGAIALALASERPDCKVTGVDLQPDAVRLAQHNAQKLN 157

Query: 256 VNNVKIVRMS 265
           + N + +  S
Sbjct: 158 ILNARFLPGS 167


>gi|320527464|ref|ZP_08028645.1| Met-10+ like-protein [Solobacterium moorei F0204]
 gi|320132177|gb|EFW24726.1| Met-10+ like-protein [Solobacterium moorei F0204]
          Length = 401

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 16/111 (14%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            VL         +L+ +   G F+L  A  +   V AV+++  +++    N   NH+ + 
Sbjct: 220 RVLLRHIARDKRVLDCFSHTGGFALNAAYGNAKAVTAVDVSNVALQQGYQNAKLNHLEDK 279

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           ++ V+    ++ + ++                 F  I +DPP       TV
Sbjct: 280 IQFVQADVFDYLEQLK--------------GNEFDIIVLDPPAFTKSRKTV 316


>gi|294791499|ref|ZP_06756656.1| putative methyltransferase small domain protein [Scardovia
           inopinata F0304]
 gi|294457970|gb|EFG26324.1| putative methyltransferase small domain protein [Scardovia
           inopinata F0304]
          Length = 243

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
              A        L+L CG G  SL LAR +   RV A++  + +VE  + N   N +   
Sbjct: 81  ADQAEGRTVATCLDLGCGWGPISLALAREYPQARVWALDSNERAVELTQANANRNGLT-- 138

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
            I   + ++       E               F  I+ +PP R G D     ++   P +
Sbjct: 139 TIAAGTRQDLEDRYGAE----------WTDASFDLIWSNPPIRIGKDPLHNLLMTYLPRL 188


>gi|288934822|ref|YP_003438881.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Klebsiella variicola At-22]
 gi|288889531|gb|ADC57849.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Klebsiella variicola At-22]
          Length = 282

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA    +   +L+L  G G  +L LA  R    V AV++   +V  A  N A   
Sbjct: 98  LVEQALARLPAVPCRILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAAHLD 157

Query: 256 VNNVKIVRMS 265
           + NV I +  
Sbjct: 158 IANVTIRQSD 167


>gi|261350337|ref|ZP_05975754.1| met-10+ protein [Methanobrevibacter smithii DSM 2374]
 gi|288861121|gb|EFC93419.1| met-10+ protein [Methanobrevibacter smithii DSM 2374]
          Length = 335

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++L+++CG G F +V+A++ +  + AV+I K +++    NI  N ++N++ +     E +
Sbjct: 188 NILDMFCGIGPFPVVIAKNNNVNITAVDINKNAIKYLNENIRLNKLHNIEAICGDINEVS 247

Query: 271 QAMRRERE 278
           + + ++ +
Sbjct: 248 KNLNKKYD 255


>gi|166714245|ref|ZP_02245452.1| oxidoreductase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 388

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 16/101 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+    +G    +L+L C  G F++   AR    VL V+I +  +  A+ N   N+V  
Sbjct: 208 QWLSEQVEGKT--VLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVR- 264

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K V+               F  L+D      +F  + +DP
Sbjct: 265 PKFVQAD------------IFPWLRDASNRGEQFDVVILDP 293


>gi|319936769|ref|ZP_08011181.1| methyltransferase [Coprobacillus sp. 29_1]
 gi|319808037|gb|EFW04609.1| methyltransferase [Coprobacillus sp. 29_1]
          Length = 400

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 17/121 (14%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            VL         +L+ +   G F+L  A      V AV++++ ++  A  N   NH+ N 
Sbjct: 219 RVLLRKMAHGKKVLDCFSHTGGFALNAAYGKAKEVHAVDVSQTALNQAYENAKLNHLENK 278

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH 317
           ++ ++    ++    +                ++  I +DPP       T+      Y  
Sbjct: 279 MRFIKDDVFDYLDKCKV--------------GQYDIIVLDPPAFTKSRRTIDHAYNGYKK 324

Query: 318 I 318
           I
Sbjct: 325 I 325


>gi|261337500|ref|ZP_05965384.1| putative methyltransferase small domain protein [Bifidobacterium
           gallicum DSM 20093]
 gi|270277897|gb|EFA23751.1| putative methyltransferase small domain protein [Bifidobacterium
           gallicum DSM 20093]
          Length = 218

 Score = 54.2 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 40/152 (26%)

Query: 183 IENSFT------QPNAG-----------INVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           + ++FT      Q N                 +L           G  L+L  G G  +L
Sbjct: 32  VPHTFTVRGHEVQVNTSHGVFSADRVDLGTQVLLRHAPDL--PETGTFLDLGSGWGPIAL 89

Query: 226 VLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            +A      RV AV++ + S++  R N  AN   N  IV  ++++    +R  R      
Sbjct: 90  AMALDAPDARVYAVDVNERSIDLTRENAQANGCAN--IVAGTAQDVPDDVRFAR------ 141

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                      I+ +PP     +A   ++  +
Sbjct: 142 -----------IWSNPPIRIGKEALHELLMTW 162


>gi|325962850|ref|YP_004240756.1| 16S rRNA m(2)G 1207 methyltransferase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468937|gb|ADX72622.1| 16S rRNA m(2)G 1207 methyltransferase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 207

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 22/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              QG+LL++ CG G  +L +A      +V AV++ +  +     N AA  + NVK    
Sbjct: 57  PAPQGNLLDIGCGWGPIALTMALRAPSAQVYAVDVNERCITLTNENAAALGLTNVKASTP 116

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
            + +                      RF TI+ +PP R G D+    +    P + 
Sbjct: 117 EAVD-------------------PDIRFDTIWSNPPIRIGKDELHSLLKLWLPRLA 153


>gi|222445095|ref|ZP_03607610.1| hypothetical protein METSMIALI_00714 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434660|gb|EEE41825.1| hypothetical protein METSMIALI_00714 [Methanobrevibacter smithii
           DSM 2375]
          Length = 335

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++L+++CG G F +V+A++ +  + AV+I K +++    NI  N ++N++ +     E +
Sbjct: 188 NILDMFCGIGPFPVVIAKNNNVNITAVDINKNAIKYLNENIRLNKLHNIEAICGDINEVS 247

Query: 271 QAMRRERE 278
           + + ++ +
Sbjct: 248 KNLNKKYD 255


>gi|281418183|ref|ZP_06249203.1| putative RNA methylase [Clostridium thermocellum JW20]
 gi|281409585|gb|EFB39843.1| putative RNA methylase [Clostridium thermocellum JW20]
          Length = 409

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 14/123 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G+F L  A    + V  V+I++ +++ A+ N   N ++
Sbjct: 223 YNRAAVARIANGKRVLDCFTHTGSFGLNAALGGAEHVTCVDISQSAIDMAKSNAVRNGLD 282

Query: 258 N-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAY 315
             +  V     +    +  +             + +  I +DPP       TV    + Y
Sbjct: 283 GKMDFVCEDVFDLLTKLAEQ-----------KCHDYDYIILDPPAFTKSRKTVQSAARGY 331

Query: 316 PHI 318
             I
Sbjct: 332 KEI 334


>gi|148642862|ref|YP_001273375.1| methyltransferase [Methanobrevibacter smithii ATCC 35061]
 gi|148551879|gb|ABQ87007.1| methyltransferase [Methanobrevibacter smithii ATCC 35061]
          Length = 335

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++L+++CG G F +V+A++ +  + AV+I K +++    NI  N ++N++ +     E +
Sbjct: 188 NILDMFCGIGPFPVVIAKNNNVNITAVDINKNAIKYLNENIRLNKLHNIEAICGDINEVS 247

Query: 271 QAMRRERE 278
           + + ++ +
Sbjct: 248 KNLNKKYD 255


>gi|20094503|ref|NP_614350.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
 gi|19887612|gb|AAM02280.1| Predicted SAM-dependent methyltransferase [Methanopyrus kandleri
           AV19]
          Length = 403

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 21/157 (13%)

Query: 186 SFT--QP-NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAK 241
            F   Q  N      +++          G +L+++   G F++  A    + V+ ++   
Sbjct: 209 GFYIDQVENRAKVQELVD---------GGRVLDVFTYVGGFAIHAAVGGAEEVVGIDKFD 259

Query: 242 PSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V+AA  N   N V + VK +   +    +   R  E   +  +D  ++      ++  
Sbjct: 260 RVVQAAYRNADLNDVRDRVKFLVGDAFALLEKFERRGEEFDVVVLDPPAFVTSKEHLNRG 319

Query: 301 RSG---LDDATVGMVQAYPHILYISC----NPDSLCR 330
           R     ++   +G+V+     +  SC     P    R
Sbjct: 320 RRAYFDVNYKALGLVRDGGLFVTCSCSHFLEPSDFVR 356


>gi|83747501|ref|ZP_00944539.1| Peptide release factor-glutamine N5-methyltransferase [Ralstonia
           solanacearum UW551]
 gi|207744460|ref|YP_002260852.1| methylase of polypeptide chain release factors protein [Ralstonia
           solanacearum IPO1609]
 gi|83725815|gb|EAP72955.1| Peptide release factor-glutamine N5-methyltransferase [Ralstonia
           solanacearum UW551]
 gi|206595866|emb|CAQ62793.1| methylase of polypeptide chain release factors protein [Ralstonia
           solanacearum IPO1609]
          Length = 309

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 51/152 (33%), Gaps = 26/152 (17%)

Query: 173 VAGRTLIYRQIENSFT----QPNAGI------NVHMLEWVLAATKGIQ-GDLLELYCGNG 221
           +AG  + Y   E  F     Q    +         ++E  L   +     D+L+L  G+G
Sbjct: 85  LAGEPMAYLLGEREFFGRLFQVTPAVLIPRPDTELLVEQALDRIEDRDAPDVLDLGTGSG 144

Query: 222 NF--SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
               ++ LAR   RV A + +  ++  A  N       NV +                 +
Sbjct: 145 IIAVTIALARRDARVWATDASADALAVAAGNAQTLDAANVHVALGD------------WY 192

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             L + D     F  I  +PP     DA +  
Sbjct: 193 GALPESDAPPA-FDLIVSNPPYIASADAHLDQ 223


>gi|332670947|ref|YP_004453955.1| methyltransferase [Cellulomonas fimi ATCC 484]
 gi|332339985|gb|AEE46568.1| methyltransferase [Cellulomonas fimi ATCC 484]
          Length = 185

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +L+LY G+G   L  A    R V  VE A+ + +  R N+A   + +V +V   ++ 
Sbjct: 44  DARVLDLYAGSGALGLEAASRGARAVTLVESAREAADVCRRNVATLGLRDVTVVAERAER 103

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           F Q          L D            V    +G
Sbjct: 104 FVQRRPVAPWDLVLVDPPYDVAEPDLAAVLADVAG 138


>gi|271966807|ref|YP_003341003.1| 16S rRNA m(2)G 1207 methyltransferase [Streptosporangium roseum DSM
           43021]
 gi|270509982|gb|ACZ88260.1| 16S rRNA m(2)G 1207 methyltransferase [Streptosporangium roseum DSM
           43021]
          Length = 209

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +LE V       +GDLL+L CG G  +L +A       V AV++ + SVE    N  A  
Sbjct: 54  LLETV--PPPPAEGDLLDLGCGYGPIALTMASRAPGATVWAVDVNRRSVELCARNARAAA 111

Query: 256 VNNVKIVRMS 265
           ++ V+ V + 
Sbjct: 112 LDKVRSVHVD 121


>gi|325122702|gb|ADY82225.1| methyl transferase [Acinetobacter calcoaceticus PHEA-2]
          Length = 271

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 19/178 (10%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENS 186
           E   RL   L  ++ Q  L G            +   + +    L V   TL+ R     
Sbjct: 35  ELKFRLEQELTVQQEQDYLAGLERIQNGEPLAYVTGSQPFWTLDLKVTSDTLVPRPD--- 91

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSV 244
                      ++E VL        ++++L  G G  +L LA  R    V A +I  P++
Sbjct: 92  --------TEILVETVLNLNLPNTANIVDLGTGTGAIALALASERPDWFVTATDIYVPTL 143

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           E A+ N   +++  VK    +  +  +  + +   +    ID      + +  +P R+
Sbjct: 144 EVAKENAQVHNLQRVKFACGAWFDALEPQKFDLIVSNPPYIDPEDEHMQALATEPRRA 201


>gi|15805067|ref|NP_293752.1| methyltransferase [Deinococcus radiodurans R1]
 gi|6457685|gb|AAF09618.1|AE001866_5 methyltransferase, putative [Deinococcus radiodurans R1]
          Length = 269

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              G +L++  G G  +L LA     V+  +IA   +E AR   A    +NV+ V   + 
Sbjct: 42  PPTGRVLDVATGTGTVALTLAPKVAEVMGTDIAPAMIEQARQRAA--GRSNVQFVLAEAT 99

Query: 268 EFTQA 272
             T A
Sbjct: 100 ALTFA 104


>gi|325916706|ref|ZP_08178963.1| SAM-dependent methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537055|gb|EGD08794.1| SAM-dependent methyltransferase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 388

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+     G    +L+L C  G F++   AR    VL V+I +  +  A+ N   N+V  
Sbjct: 208 QWLSEQVDGKS--VLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVR- 264

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K V+               F  L+D      +F  + +DP
Sbjct: 265 PKFVQAD------------IFPWLRDAANRGEQFDVVILDP 293


>gi|291524287|emb|CBK89874.1| SAM-dependent methyltransferase [Eubacterium rectale DSM 17629]
          Length = 413

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
              +          +L+ +   G F+L         V  ++I++ +V+ A  N   N+++
Sbjct: 221 YNRLAMQRICKGKRVLDCFTHMGTFALNAGIAGASEVTGLDISEYAVKQATENAKRNNLS 280

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP 316
                       T   R     + L  +     ++  + +DPP      +AT   ++ Y 
Sbjct: 281 E-----------TVKFRVANVLDELPRLAADGEKYDVVILDPPAFTKSREATKNAIKGYR 329

Query: 317 HI 318
            I
Sbjct: 330 EI 331


>gi|229125618|ref|ZP_04254650.1| hypothetical protein bcere0015_880 [Bacillus cereus BDRD-Cer4]
 gi|228657810|gb|EEL13616.1| hypothetical protein bcere0015_880 [Bacillus cereus BDRD-Cer4]
          Length = 213

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 68  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIKNIRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 167


>gi|229148510|ref|ZP_04276766.1| hypothetical protein bcere0011_880 [Bacillus cereus m1550]
 gi|228634926|gb|EEK91499.1| hypothetical protein bcere0011_880 [Bacillus cereus m1550]
          Length = 213

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 68  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIENIRIF 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 128 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 167


>gi|30018371|ref|NP_830002.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus ATCC 14579]
 gi|29893911|gb|AAP07203.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus cereus ATCC 14579]
          Length = 199

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I+G++L++ CG G   L LA+ F    V  V++ + ++  A+ N A N + N++I 
Sbjct: 54  QMPDIKGNILDVGCGYGPIGLSLAKEFQGREVHMVDVNERALGLAKENAANNKIKNIRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 114 QSSVYENVDG------------------KYAAILSNPPIRAGKDIVHEILEKAVEYLV 153


>gi|86131745|ref|ZP_01050342.1| methyltransferase, HemK family [Dokdonia donghaensis MED134]
 gi|85817567|gb|EAQ38741.1| methyltransferase, HemK family [Dokdonia donghaensis MED134]
          Length = 291

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 24/143 (16%)

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTV---AGRTLIYRQIENSF----TQPNAGI- 194
           H  K     I  + K  I   +    E +T        + Y    +SF     Q N    
Sbjct: 33  HVLKMNRVEISLSRKQNIHPSQRKELEEITARLSKSEPMQYITGSSSFYGLDFQVNPATL 92

Query: 195 -----NVHMLEWVLA--------ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEI 239
                   ++ W++                 LL++  G+G  ++ LA++ ++  V AV+I
Sbjct: 93  IPRPETEELVAWIIDDVAQGLLKEEAQDMLRLLDIGTGSGCIAITLAKNINKATVEAVDI 152

Query: 240 AKPSVEAARYNIAANHVNNVKIV 262
           ++ ++  A  N  AN V  V   
Sbjct: 153 SQNALATAYQNAKANGVK-VDFY 174


>gi|138893776|ref|YP_001124229.1| 16S rRNA m(2)G 1207 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196251113|ref|ZP_03149792.1| methyltransferase small [Geobacillus sp. G11MC16]
 gi|134265289|gb|ABO65484.1| 16S rRNA m(2)G 1207 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209354|gb|EDY04134.1| methyltransferase small [Geobacillus sp. G11MC16]
          Length = 200

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 30/116 (25%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             + GDLL++ CG G   L LA+ F   RV  +++ + ++E A  N  AN ++N  I + 
Sbjct: 56  PDVAGDLLDVGCGYGPIGLALAKSFPDRRVQMIDVNERALELAEENKQANGIHNAIIYKS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                         F+ + +      RF  +  +PP           ++A   +++
Sbjct: 116 D------------LFSEVGEQ-----RFAAVITNPP-----------IRAGKRVVH 143


>gi|42522494|ref|NP_967874.1| putative methyltransferase [Bdellovibrio bacteriovorus HD100]
 gi|39575026|emb|CAE78867.1| putative methyltransferase [Bdellovibrio bacteriovorus HD100]
          Length = 405

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
           N  M++            +L L+   G FS+  A+     V +V+IAK +++A   N   
Sbjct: 221 NRKMIQ-----HFAKDKTVLNLFSYTGGFSIFAAKGGAKEVTSVDIAKVAIQAVARNFEI 275

Query: 254 NHVNNVKI-VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           N +  V   V   +  + + +  E++            ++  +  DPP    ++ +V   
Sbjct: 276 NDLKTVHHDVATDAFAYLEQLNTEKK------------KYDIVITDPPSFAPNEKSVEQA 323

Query: 313 QA 314
           +A
Sbjct: 324 KA 325


>gi|114319434|ref|YP_741117.1| HemK family modification methylase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225828|gb|ABI55627.1| [protein release factor]-glutamine N5-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 295

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 21/116 (18%)

Query: 195 NVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
              ++E  LA   G  Q  + +L  G G  +L LA      RV AVE +  ++  AR N 
Sbjct: 112 TELLVEAALARVDGDRQLRVADLGTGTGAIALALADECPAWRVTAVEASAGALVVARENA 171

Query: 252 AANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
               + + V++V  S             F  L        RF  +  +PP  G+ +
Sbjct: 172 RRLGLADRVQVVAGS------------WFGPL-----AGERFDLVVSNPPYVGVHE 210


>gi|332237254|ref|XP_003267819.1| PREDICTED: high mobility group nucleosome-binding domain-containing
           protein 4-like isoform 1 [Nomascus leucogenys]
          Length = 508

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 97/270 (35%), Gaps = 26/270 (9%)

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTL 121
            D   K  + +   +  S  I+   +E+     + E +LRA L +   +TS    + V  
Sbjct: 147 HDSFEKAELSVLEQLNVSPQISKYNLELTYENFKSEEILRAVLPEGQDVTS--GFSRVGH 204

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC--LDRDYVDERLT------- 172
           I H  L D        +   +  +   I      NK  I   + R++  E L+       
Sbjct: 205 IAHLNLRDHQLPFKHLIGQVMIDKNPGITSAV--NKINIIDNMYRNFQMEVLSGEQNMMT 262

Query: 173 -VAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA 228
            V      Y   E  F++   N  ++    E          GD+L +++ G G F++ +A
Sbjct: 263 KVRENNYTY---EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAIPVA 316

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           +    V A ++   S +   +N   N V+  VK+  +  K+F Q   +E     L     
Sbjct: 317 KKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGLSKE 376

Query: 288 HSYRFKTIFVDPPRSG-LDDATVGMVQAYP 316
                  +   P ++     A   ++   P
Sbjct: 377 RKPSVHVVMNLPAKAIEFLSAFKWLLDGQP 406


>gi|223986800|ref|ZP_03636782.1| hypothetical protein HOLDEFILI_04105 [Holdemania filiformis DSM
           12042]
 gi|223961233|gb|EEF65763.1| hypothetical protein HOLDEFILI_04105 [Holdemania filiformis DSM
           12042]
          Length = 301

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 25/151 (16%)

Query: 167 VDERLTVAGRTLIYRQIENSFT-------Q-PNAGINVHMLEWVLAATKGIQGDLLELYC 218
           V E  TV+ + L ++     F        Q  N       +    AA  G    +L L+ 
Sbjct: 70  VPETWTVSYKELTFKVSPTGFKHTGLFPEQAVNWDWMQSKIRKAKAA--GRPVRILNLFA 127

Query: 219 GNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRR 275
             G  ++  A    D V+ V+ +K  V+ A+ N+  +H+ N  ++ +     +F    +R
Sbjct: 128 YTGGATMACASAGADEVVHVDASKGMVQWAKENMTLSHLENRTIRFIVDDVLKFVAREKR 187

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                         + ++ I +DPP  G   
Sbjct: 188 ------------RGHTYQGILMDPPSYGRGP 206


>gi|55297221|dbj|BAD68985.1| putative tRNA-(N1G37) methyltransferase [Oryza sativa Japonica
           Group]
          Length = 586

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 89/262 (33%), Gaps = 41/262 (15%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD 140
            L+   +        +  +L   L +   + +  +   V  I H  L D          D
Sbjct: 277 ELVQCQLTLFYNYWPMNEILEEILPEGIIVPTGFET--VGHIAHLNLRD----------D 324

Query: 141 ALHARKYQIQLIGRANKTKI--------CLDRDYVDERLTV--AGRTLIYRQIENSF-TQ 189
            L  +K   Q++   NK KI         +  DY   +L V     +L+   IE+    Q
Sbjct: 325 HLPYKKLIAQVVLDKNKPKIQTVVNKIDAIQNDYRTMQLEVLAGIDSLVTTVIESGLRFQ 384

Query: 190 P-------NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
                   N+ ++    + ++         + +++ G G  ++  AR    V A ++   
Sbjct: 385 VDLSTVYWNSRLSTE-RQRLVDHVFKNSDVVCDVFSGVGPIAISAARKVKYVYANDLNPT 443

Query: 243 SVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           +VE    NI  N +   +++  M ++ F  ++   +  + +          + +   P  
Sbjct: 444 AVEYLERNIVLNKLERKIEVFNMDARRFISSIYSSQHVHPVT---------QVVMNLPND 494

Query: 302 SGLDDATVGMVQAYPHILYISC 323
           +         +    H+   SC
Sbjct: 495 AAEFLDVFRGISWNHHLAVPSC 516


>gi|269114935|ref|YP_003302698.1| Protoporphinogen oxydase HEMK [Mycoplasma hominis]
 gi|268322560|emb|CAX37295.1| Protoporphinogen oxydase HEMK [Mycoplasma hominis ATCC 23114]
          Length = 235

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 63/180 (35%), Gaps = 39/180 (21%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
            KI   +++ +  L +  +TLI R                 +          +  +L+L 
Sbjct: 35  QKIIGYQEFQNVILNLKYKTLIPRY------------ETEEVILAAYPFIKKESKVLDLG 82

Query: 218 CGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           CG+G   L + +     V   +I++ +++  + N   N++ NV ++R +           
Sbjct: 83  CGSGLIGLAIKKNKDANVTLSDISRFAIKQTKINAKLNNL-NVNVIRSN----------- 130

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILS 336
             FN++        +F  I  +PP        +  ++  P             RD  + +
Sbjct: 131 -WFNKITS------KFDVIVCNPPYLKKQKKLIKSLKWEPKR-------ALFARDNGLFA 176


>gi|188579249|ref|YP_001916178.1| oxidoreductase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523701|gb|ACD61646.1| oxidoreductase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 364

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 16/101 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+    +G    +L+L C  G F++   AR    VL V+I +  +  A+ N   N+V  
Sbjct: 184 QWLSEQVEGKT--VLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIAIAKGNAKLNNVR- 240

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K V+               F  L+D      +F  + +DP
Sbjct: 241 PKFVQAD------------IFPWLRDASNRGEQFDVVILDP 269


>gi|162456339|ref|YP_001618706.1| putative methyltransferase HemK [Sorangium cellulosum 'So ce 56']
 gi|161166921|emb|CAN98226.1| putative methyltransferase HemK [Sorangium cellulosum 'So ce 56']
          Length = 294

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 16/168 (9%)

Query: 139 RDALHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           R  L A +   Q           L  R++      V  R LI R        P+  I V 
Sbjct: 63  RAELAAYRELHQRRRAGEPVAYLLGVREFYGRPFRVDPRVLIPR--------PDTEILVE 114

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
            +         +   +L+L  G+G  ++ LA  R   RVL V+I+  ++  AR N     
Sbjct: 115 -VALARTRHLALSARVLDLCTGSGCVAISLACERPTSRVLGVDISDGALAVARENALRLG 173

Query: 256 VNNVKIVRMSSKEFTQAMRREREF----NRLKDIDIHSYRFKTIFVDP 299
             N   +R        +  R          + D D+ + +      +P
Sbjct: 174 AVNAGFLRSDLFAGVPSGLRYDLITANPPYIPDEDVAALQIDIRGYEP 221


>gi|326515942|dbj|BAJ87994.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518766|dbj|BAJ92544.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 576

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 96/266 (36%), Gaps = 38/266 (14%)

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
                L+   +        +  +L A L   + +   +    V  I H  L D       
Sbjct: 265 PFAYELVQCQITLFYNYWPMNEVLEALLP--EGIIIPAGFETVGHIAHLNLRD------- 315

Query: 137 RLRDALHARKYQIQLIGRANKTKI--------CLDRDYVDERL-----------TVAGRT 177
              + L  +    Q++   NK KI         +  DY   +L           TV    
Sbjct: 316 ---EHLPYKTLIAQVVLDKNKPKIQTVVNKIDAIQNDYRTMQLEILAGHDSLVTTVIESG 372

Query: 178 LIYRQ-IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
           L +R  +   +   N+ ++    + ++ +       + +++ G G  ++  A+    V A
Sbjct: 373 LRFRVDLATVYW--NSRLSTE-RQRLVNSIFQNSDVVCDVFSGVGPIAISAAKKVKYVYA 429

Query: 237 VEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            ++   +VE    NI  N +   +++  M ++ F  AM   +  + +  + ++  +    
Sbjct: 430 NDLNPAAVEYLERNIVLNKLERKIEVFNMDARRFVNAMFSSQHVHPVTQVVMNLPKDAAE 489

Query: 296 FVDPPRSGLDDATVGMVQAYPHI-LY 320
           F+D  R  L +   G + A P I +Y
Sbjct: 490 FLDVFRGILRNRQTGHI-AMPKIHVY 514


>gi|219852321|ref|YP_002466753.1| methyltransferase type 11 [Methanosphaerula palustris E1-9c]
 gi|219546580|gb|ACL17030.1| methyltransferase type 11 [Methanosphaerula palustris E1-9c]
          Length = 174

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 10/83 (12%), Positives = 30/83 (36%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              +  M   +          + ++ CG G  ++ +A     V+AV+  + ++  A    
Sbjct: 7   PTQDEVMAISLFKLGVQSGDTVADIGCGTGKVAIAMAADAGSVIAVDRREEAIAVAEQAA 66

Query: 252 AANHVNNVKIVRMSSKEFTQAMR 274
                +N++     + +  + + 
Sbjct: 67  LEAGTSNIEFHCGEATDLLRQIP 89


>gi|320527943|ref|ZP_08029109.1| SAM-dependent methyltransferase family protein [Solobacterium
           moorei F0204]
 gi|320131569|gb|EFW24133.1| SAM-dependent methyltransferase family protein [Solobacterium
           moorei F0204]
          Length = 292

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 30/173 (17%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEW---VLAATKGIQGDLLELYC 218
           R  + E  T+  + L ++     F          V+  +W   ++      +  +L L+ 
Sbjct: 68  RKKLPESWTINYKDLTFKVSPTGFKHTGLFPEQAVNW-DWMSDLIKKYPNEEIRVLNLFA 126

Query: 219 GNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRR 275
             G  ++  A+     V+ V+ +K  V+ A+ N     + N  ++ +     +F +  +R
Sbjct: 127 YTGGATMACAKAGAAEVVHVDASKGMVQWAKENRDLCGLQNNKIRFIVDDCLKFVEREKR 186

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSG---------LDDATVGMVQAYPHIL 319
                         + +  I +DPP  G          +     ++QA   IL
Sbjct: 187 ------------RGHTYHGILMDPPSYGRGPNGEMWKFEKEVTRLIQACVEIL 227


>gi|67463853|pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
 gi|67463854|pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
           Horikoshii Ot3
          Length = 227

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LE +L      +G +L+L CG G FS +L  +   V+ V+I++  +  AR    +   +N
Sbjct: 28  LEPLLXKYXKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDXIRKAREYAKSRE-SN 86

Query: 259 VKIVRMSSKEFT 270
           V+ +   +++ +
Sbjct: 87  VEFIVGDARKLS 98


>gi|55378190|ref|YP_136040.1| methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55230915|gb|AAV46334.1| predicted methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 326

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSS 266
           G      +++ G G F++  A+     +  +I + ++E  + N   N   + +  +    
Sbjct: 173 GEGEQTFDMFAGVGPFAIPFAKRGASCVGTDINETAIEYLQANAERNGVADRMTGICGDV 232

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +E       E E    + +    +          R   D+  V 
Sbjct: 233 REVA----GEYEDWADRVVMNLPHSADEFLETAVRLAADECVVH 272


>gi|331008867|gb|EGH88923.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 277

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELAPAFAPAKVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  NR     +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNRHWFSALEGQQFDLIISNPP 185


>gi|257870490|ref|ZP_05650143.1| rRNA small subunit methyltransferase C [Enterococcus gallinarum
           EG2]
 gi|257804654|gb|EEV33476.1| rRNA small subunit methyltransferase C [Enterococcus gallinarum
           EG2]
          Length = 200

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 18/152 (11%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
            D+      + G+   +      F++        +L          +G +L++ CG G  
Sbjct: 14  HDFEQWSFELKGKKFQFVTDSGVFSRETVDYGSRVLIDAFEWADLPEGTILDVGCGYGPI 73

Query: 224 SLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            L LA    R V  ++I + +V+ A+ N   N + N  I   +  E              
Sbjct: 74  GLSLAYASQRPVEMIDINQRAVDLAQGNAKRNGIENADIHASNIYE-------------- 119

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
               +H   +  I  +PP     +    ++  
Sbjct: 120 ---TLHQGEYAAILSNPPIRAGKEVVHEILTG 148


>gi|167750458|ref|ZP_02422585.1| hypothetical protein EUBSIR_01434 [Eubacterium siraeum DSM 15702]
 gi|167656609|gb|EDS00739.1| hypothetical protein EUBSIR_01434 [Eubacterium siraeum DSM 15702]
          Length = 288

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 68/181 (37%), Gaps = 38/181 (20%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFT-------Q-PNAGINVHMLEWVLAATKGIQGDLLE 215
           R  + E   ++ + L +      F        Q  N  +   +++       G + ++L 
Sbjct: 67  RKQLPESWNISYKGLTFMVKPTGFKHTGIFPEQAVNWDLCSELIKNA-----GREINVLN 121

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAM 273
           ++   G  +L  A+   +V  ++  K  V+  R N   + +++  ++ +   + +F    
Sbjct: 122 MFAYTGGATLACAKAGAKVCHLDAVKGMVDWGRTNAKLSGLSDKPIRWIVDDAVKFL--- 178

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSG---------LDDATVGMVQAYPHILYISCN 324
              RE  R         R+  I +DPP  G         L+D+   ++     +L  S N
Sbjct: 179 --GREIRR-------GNRYDGIILDPPSYGRGTNGEMWKLEDSICDLMNMCTEVL--SDN 227

Query: 325 P 325
           P
Sbjct: 228 P 228


>gi|315604446|ref|ZP_07879512.1| 16S rRNA methyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315314152|gb|EFU62203.1| 16S rRNA methyltransferase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 204

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 18/123 (14%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIA 252
              +LE  +A     +G LL+L CG G  + V++    R  V AV++   +V+    N A
Sbjct: 47  TRQLLE--VAPDLPPRGALLDLGCGWGPLATVMSLEAPRCEVWAVDVNSRAVDLTARNAA 104

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           AN  + V+   + + E      R   F            F  I+ +PP     +A   M+
Sbjct: 105 ANGASGVR--ALKACEALAESVRSATF------------FDVIWSNPPVRIGKEAMHEML 150

Query: 313 QAY 315
             +
Sbjct: 151 SQW 153


>gi|15679861|ref|NP_276979.1| met-10+ protein [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2623010|gb|AAB86339.1| met-10+ protein [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 352

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 40/168 (23%)

Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEF 269
           +L+++ G G F++ +ARH    RV AV+I   +V     N   NH  +V   V    +EF
Sbjct: 191 VLDMFAGAGPFAIAVARHGRASRVYAVDINPAAVRYIEENARLNHAEDVIVAVEGDVREF 250

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYPHILYISCNPDS 327
                R+RE                I ++ P S  +  D  +  ++    I Y       
Sbjct: 251 L----RDRECF-----------ADHIIMNLPGSACEFLDDAIRALRDGGVIHY-----YE 290

Query: 328 LCRDLSILSTTHTIERLA-LFDQFPYTRHMECG----VLLVRKPSGWH 370
             RD    +  + ++  A  F       H++      V   R P  WH
Sbjct: 291 FARDFK--TPVNRLKEAAKPF-------HVDVLDMRRVK-SRSPGVWH 328


>gi|326780899|ref|ZP_08240164.1| methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326661232|gb|EGE46078.1| methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 252

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 19/110 (17%)

Query: 192 AGINVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
              +  +L   +     G   DLL+L  G+G  +L  AR   RV AV+I++ +V +AR N
Sbjct: 48  PQTDTLLLALAMRREGIGPGTDLLDLCTGSGALALHAARLGARVTAVDISRRAVASARLN 107

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A   +     V +   +  +A+                + F  +  +PP
Sbjct: 108 TALARLP----VTVRRGDLLRAL--------------PGHTFDAVVSNPP 139


>gi|284166828|ref|YP_003405107.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284016483|gb|ADB62434.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 270

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF- 269
             +L++ CG G  +  +A     V+ V+I+   +E A+       + NV   RMS+ E  
Sbjct: 111 PTVLDVACGTGRITRRVAGDAASVVGVDISGGMLERAQRYAVREGIENVAFARMSADELW 170

Query: 270 --TQAMRRER---EFNRLKDIDIHSYRFKTIF 296
             T A  R       +   DID      + + 
Sbjct: 171 IGTDAFDRVACCWALHLFPDIDAALAEIRRVL 202


>gi|326315554|ref|YP_004233226.1| S-adenosylmethionine-dependent methyltransferase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372390|gb|ADX44659.1| S-adenosylmethionine-dependent methyltransferase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 395

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  YC  G F++  LA    +V +++ + P++E AR + A N     +   + + +  
Sbjct: 220 QVLNCYCYTGGFTVAALAGGASQVTSIDSSGPALERARSHAALNGFEAARTEFLDA-DVN 278

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            ++RR  +  R         RF  I +DPP+  
Sbjct: 279 ASLRRFLQEGR---------RFDAIVLDPPKFA 302


>gi|253990003|ref|YP_003041359.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253781453|emb|CAQ84616.1| protein methyltranferase hemk (protein-glutamine n
           methyltransferase) [Photorhabdus asymbiotica]
          Length = 283

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 51/143 (35%), Gaps = 30/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    LTV+  TLI R                ++E  L         +L+L  G
Sbjct: 72  ITGEREFWSLSLTVSPATLIPRPD-----------TECLVEKALECLSLTPCRILDLGTG 120

Query: 220 NGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L +A  R   +V  V+I   +V  A+ N     + NV                  
Sbjct: 121 TGAIALAIASERSDCQVTGVDINPDAVMLAQGNAEKLKIQNVDF---------------- 164

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
             N      +++ +F  I  +PP
Sbjct: 165 -LNSNWFSSLNNQQFDMIVSNPP 186


>gi|254444480|ref|ZP_05057956.1| Conserved hypothetical protein 95 [Verrucomicrobiae bacterium
           DG1235]
 gi|198258788|gb|EDY83096.1| Conserved hypothetical protein 95 [Verrucomicrobiae bacterium
           DG1235]
          Length = 413

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 208 GIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
               D+L++ C  G F+L   ++     V AV++ + ++  A+ N   N    V      
Sbjct: 237 ARGKDVLDVCCYTGGFALSAMVSGGASEVTAVDLDEKAIAQAKRNANLNGQARVNWTHCD 296

Query: 266 SKEFTQAMRREREFNRLKDID 286
           +  F + M+R  +   L ++D
Sbjct: 297 AFSFMRQMQRNGKRWDLVNLD 317


>gi|182440236|ref|YP_001827955.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178468752|dbj|BAG23272.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 252

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 19/110 (17%)

Query: 192 AGINVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
              +  +L   +     G   DLL+L  G+G  +L  AR   RV AV+I++ +V +AR N
Sbjct: 48  PQTDTLLLALAMRREGIGPGTDLLDLCTGSGALALHAARLGARVTAVDISRRAVASARLN 107

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A   +     V +   +  +A+                + F  +  +PP
Sbjct: 108 TALARLP----VTVRRGDLLRAL--------------PGHTFDAVVSNPP 139


>gi|300711062|ref|YP_003736876.1| hypothetical protein HacjB3_08505 [Halalkalicoccus jeotgali B3]
 gi|299124745|gb|ADJ15084.1| hypothetical protein HacjB3_08505 [Halalkalicoccus jeotgali B3]
          Length = 329

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVR 263
                   + +++ G G F++  A    + +  ++   ++E  R N   N V + V    
Sbjct: 170 EQVAENEHVFDMFAGVGPFAIPAAARGAQAVGADVNGRAIEYLRENAERNGVGDRVTAFH 229

Query: 264 MSSKEFTQAMRRERE 278
              +E         +
Sbjct: 230 GDVREVAPEYEGWAD 244


>gi|260437928|ref|ZP_05791744.1| methyltransferase [Butyrivibrio crossotus DSM 2876]
 gi|292809680|gb|EFF68885.1| methyltransferase [Butyrivibrio crossotus DSM 2876]
          Length = 425

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 27/186 (14%)

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA---GRTLIYRQIENSF-TQPNAG 193
           L++ L +    I+ +   +  K+ L+     ER+              +EN      N  
Sbjct: 167 LKEELASHGMNIRGVYERSDAKVRLNE--GMERVKGFIGEPFDTKVEIVENGVKYMVNVA 224

Query: 194 INVH-------MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVE 245
                                     +L+ +   G+F+L  A      VL V+ ++  VE
Sbjct: 225 DGQKTGFFLDQKYNRAAVGRLCKGAKVLDCFTHTGSFALNAATSGAESVLGVDASELGVE 284

Query: 246 AARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A+ N   N+V +  + +     E             L ++     ++  + +DPP    
Sbjct: 285 QAKENAILNNVQDKTEFICRDVFEL------------LPELVEKGEQYDVVILDPPAFTK 332

Query: 305 DDATVG 310
              +V 
Sbjct: 333 SRNSVK 338


>gi|159039802|ref|YP_001539055.1| methyltransferase small [Salinispora arenicola CNS-205]
 gi|157918637|gb|ABW00065.1| methyltransferase small [Salinispora arenicola CNS-205]
          Length = 201

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 21/128 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +L           G LL+L CG G  + VLA       V AV++   + E    N A
Sbjct: 47  TAVLLRKADLPAPTTTGQLLDLGCGFGPITCVLATSAPSATVWAVDVNARARELTTVNAA 106

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                    V                     D    +  F  I+ +PP R G ++    +
Sbjct: 107 RVGAAGRVRVVE------------------PDAVAAAVTFDQIWSNPPIRIGKNELHQLL 148

Query: 312 VQAYPHIL 319
           ++  P + 
Sbjct: 149 LRWLPRLA 156


>gi|300853986|ref|YP_003778970.1| ribosomal protein L11 methyltransferase [Clostridium ljungdahlii
           DSM 13528]
 gi|300434101|gb|ADK13868.1| ribosomal protein L11 methyltransferase [Clostridium ljungdahlii
           DSM 13528]
          Length = 313

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 67/205 (32%), Gaps = 21/205 (10%)

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD--DAWRECAIRLRDALHARKYQIQLIGRA 155
             ++  +  ++       + ++T+      D  + W+E     +   H     I     A
Sbjct: 82  KYIKDSINNLESFGIDKGKGLITVSKVNEEDWENKWKEYYKPYKVGKHIVVKPIWENYEA 141

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLE 215
            K  I ++ D      T    T                    M    L      +  + +
Sbjct: 142 EKDDIIVELDPGMAFGTGTHET------------------TKMCIKALEKYIKPEYTVFD 183

Query: 216 LYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +  G+G  ++  ++     V  V++   +V++A  N+  NH+ NV I+     +  +   
Sbjct: 184 IGTGSGILAITSSKLGAKEVTGVDLDPVAVKSASTNVGYNHIKNVNILHGDLMDVVKGKA 243

Query: 275 REREFNRLKDIDIHSYRFKTIFVDP 299
                N + D+ I        F+ P
Sbjct: 244 NIVVANIIADVIIFLADGVKDFMLP 268


>gi|126734373|ref|ZP_01750120.1| magnesium protoporphyrin O-methyltransferase [Roseobacter sp. CCS2]
 gi|126717239|gb|EBA14103.1| magnesium protoporphyrin O-methyltransferase [Roseobacter sp. CCS2]
          Length = 230

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML  +    +G    +L+  CG G  ++ LA+    V+AV+I+   V  A   + AN 
Sbjct: 48  ALMLAQLPEDLRG--ARVLDAGCGTGAMAVELAQRGADVVAVDISPALVGIAEQRMPANL 105

Query: 256 VNNVKIVRMSSKEFTQAM------------RREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
             ++  V     E T  M                +   L          K +F  PPR+ 
Sbjct: 106 AGHITWVAGDMLEATNGMFDHALAMDSMIYYSAPDIAALLGRASSRINGKFVFTLPPRTP 165

Query: 304 LDDATVGMVQAYPH 317
              A   + + +P 
Sbjct: 166 ALMAMWRVGKLFPR 179


>gi|329893827|ref|ZP_08269898.1| methyltransferase [gamma proteobacterium IMCC3088]
 gi|328923426|gb|EGG30741.1| methyltransferase [gamma proteobacterium IMCC3088]
          Length = 275

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 48/113 (42%), Gaps = 13/113 (11%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  +L++ CG G  +L LA+   +V  V++++P +  A+   A    +N++++   +   
Sbjct: 47  EERVLDVGCGCGATTLALAQSGAQVTGVDLSEPMINRAKERAA--GYDNIELIVKDA--- 101

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                    ++ +   D+   RF  +F   P           ++    +++I 
Sbjct: 102 -------CVYDTMHQFDLIFSRFGVMFFADPYEAFGH-LHAQLKPNGRLVFIC 146


>gi|242094784|ref|XP_002437882.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor]
 gi|241916105|gb|EER89249.1| hypothetical protein SORBIDRAFT_10g004380 [Sorghum bicolor]
          Length = 209

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 24/136 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARY 249
             I   ML     +   I G ++ +  CG G  ++  A    + VL ++I   S+E A+ 
Sbjct: 30  PHIASRMLYTAENSFDDITGKVVADFGCGCGTLAVGSALLEAEHVLGIDIDPQSLELAQE 89

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
           N A   ++                  +  ++ +K++++      T+ ++PP    R+G D
Sbjct: 90  NAADLELD-----------------IDLVWSDIKNLNLKGVHVDTVVMNPPFGTRRNGAD 132

Query: 306 DATVGM-VQAYPHILY 320
              + M ++     +Y
Sbjct: 133 MEFLSMGLKVASQAVY 148


>gi|145219787|ref|YP_001130496.1| SAM-dependent methyltransferase [Prosthecochloris vibrioformis DSM
           265]
 gi|145205951|gb|ABP36994.1| SAM-dependent methyltransferase [Chlorobium phaeovibrioides DSM
           265]
          Length = 393

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+++  +G F L  LA      + V+ ++ +++ A +N   N  +N  ++   +   
Sbjct: 220 ARVLDVFTNDGGFGLNALAAGAGSAILVDASEDALKRAEHNAKLNGYDNFSLIADDAFNI 279

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
            Q M   +E             F  + +DPP          G ++AY  +
Sbjct: 280 LQQMIDAKE------------SFDLVILDPPSFTKSRKNVPGALKAYRKL 317


>gi|187930215|ref|YP_001900702.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ralstonia pickettii 12J]
 gi|187727105|gb|ACD28270.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ralstonia pickettii 12J]
          Length = 300

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 16/120 (13%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L   +      +L++  G+G    ++ LAR   RV A + +  ++  A  N 
Sbjct: 103 TELLVEQALDHLEECDAPAVLDMGTGSGIIAITIALARRDARVWATDASADALAVAIDNA 162

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            A    NV+                  +  L   D     F  I  +PP     DA +  
Sbjct: 163 KALGATNVQTALGD------------WYGALAGTDAPPA-FDLIASNPPYIAATDAHLDQ 209


>gi|241664383|ref|YP_002982743.1| modification methylase, HemK family [Ralstonia pickettii 12D]
 gi|240866410|gb|ACS64071.1| modification methylase, HemK family [Ralstonia pickettii 12D]
          Length = 300

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 16/120 (13%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L   +      +L++  G+G    S+ LAR   RV A + +  ++  A  N 
Sbjct: 103 TEVLVEQALDRLEERDAPAVLDMGTGSGIIAISIALARRDARVWATDASADALAVAIDNA 162

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            A    NV+                  +  L   D     F  I  +PP     DA +  
Sbjct: 163 KALGATNVQAALGD------------WYGALAGTDAPPA-FDLIASNPPYIAATDAHLDQ 209


>gi|288560192|ref|YP_003423678.1| SAM-dependent methyltransferase [Methanobrevibacter ruminantium M1]
 gi|288542902|gb|ADC46786.1| SAM-dependent methyltransferase [Methanobrevibacter ruminantium M1]
          Length = 271

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ++E +       +  +L+L CG+G+ ++ LA+    V  V+ A   +E    N     
Sbjct: 49  TKIIERI---NVSKEDTILDLGCGDGSITIPLAKKAKSVTGVDSAYKMLEILNENAKKEG 105

Query: 256 VNNVKIVRMS 265
           + N++ +   
Sbjct: 106 IENIRTLEED 115


>gi|268326449|emb|CBH40037.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 11 family [uncultured archaeon]
          Length = 273

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 1/90 (1%)

Query: 184 ENSFTQ-PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           + SF+   N       ++  L+     + ++LE+  G G F +  A    +V AVE ++ 
Sbjct: 36  DFSFSHKTNGFEYGEKVKNALSGVLNSKSEVLEIGPGPGTFVIPFASEVRKVTAVEPSEG 95

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            V   + N     + N +++    +E  ++
Sbjct: 96  MVRELKKNAEKAGIGNCEVINKKWEEVDES 125


>gi|254383852|ref|ZP_04999199.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194342744|gb|EDX23710.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 218

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + +     + D+L+  CG G+ SL+LA    RV  V++A   VE A   +AA      + 
Sbjct: 40  LRSWLPDARADVLDAGCGTGSLSLLLAEAGHRVTGVDLAPHMVERAEAKLAAAGRAG-RF 98

Query: 262 VRMSSK 267
           +   + 
Sbjct: 99  LVGDAA 104


>gi|318079764|ref|ZP_07987096.1| methyltransferase [Streptomyces sp. SA3_actF]
          Length = 115

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 8/118 (6%)

Query: 192 AGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
              + H+L   L     G    +L+L  G+G  +L+ AR   RV A +++  +V +AR N
Sbjct: 4   PQADTHLLARALGTEPIGPHTHVLDLCTGSGALALLAARRGARVCATDLSWRAVVSARIN 63

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            A      V+++R       +  R +        +    Y         PR G   A 
Sbjct: 64  AARAG-QRVRVLRGDLSGPVRGQRFDLV------VSNPPYVPDPAARTGPRRGRSHAA 114


>gi|325919740|ref|ZP_08181737.1| SAM-dependent methyltransferase [Xanthomonas gardneri ATCC 19865]
 gi|325549765|gb|EGD20622.1| SAM-dependent methyltransferase [Xanthomonas gardneri ATCC 19865]
          Length = 388

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 210 QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +L+L C  G F++   AR    VL V+I +  +  A+ N   N+V   K V+     
Sbjct: 216 DKTVLDLCCNTGGFAVYAAARGASEVLGVDIDEDVIALAKGNAKLNNVR-PKFVQAD--- 271

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
                     F  L+D      +F  + +DP
Sbjct: 272 ---------IFPWLRDAANRGDQFDVVILDP 293


>gi|257051330|ref|YP_003129163.1| methyltransferase [Halorhabdus utahensis DSM 12940]
 gi|256690093|gb|ACV10430.1| methyltransferase [Halorhabdus utahensis DSM 12940]
          Length = 326

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVR 263
              G      +++ G G F + +A+     + V++   ++E  R N   N   + +  + 
Sbjct: 170 EQVGAGEQAFDMFAGVGPFVIPMAKEGATCVGVDVNPDAIEYLRENARRNDVADRITAIE 229

Query: 264 MSSKEFTQA 272
              +E   A
Sbjct: 230 GDVRETVPA 238


>gi|171916113|ref|NP_001116448.1| tRNA wybutosine-synthesizing protein 2 homolog [Rattus norvegicus]
 gi|143679922|sp|Q4V8B8|TYW2_RAT RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|127800077|gb|AAH97456.2| Trmt12 protein [Rattus norvegicus]
 gi|149066341|gb|EDM16214.1| rCG59483 [Rattus norvegicus]
          Length = 437

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 61/175 (34%), Gaps = 13/175 (7%)

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
            LE  L     +   L   S+       + RL  + W   A  L     A++ ++   G 
Sbjct: 115 ELEADLPRSWQRHGDLMLLSEDCFQATQWKRLEPELWETVASALGVQRLAKRGRVLPDGT 174

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAGINVHMLEWVLAATKGIQGD 212
              T   L  D+        G    +   +   SF         ++ E +  A+    G+
Sbjct: 175 RTPTVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSF--------GNITEKLRVASLSCAGE 226

Query: 213 LL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           +L +LY G G F+L    H     V A E    +V A R N+  N V +   +  
Sbjct: 227 VLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRKNLEINGVADRCQIHF 281


>gi|328543734|ref|YP_004303843.1| methyltransferase small [polymorphum gilvum SL003B-26A1]
 gi|326413478|gb|ADZ70541.1| Methyltransferase small [Polymorphum gilvum SL003B-26A1]
          Length = 365

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           L W L+A  G     L+L  G G  +L LA     V+AVEI   +   A+ N AAN +
Sbjct: 128 LAWRLSAKPG--DRALDLCAGPGIQALRLAAMGAEVVAVEINPVAASLAQLNAAANGL 183


>gi|121610059|ref|YP_997866.1| 3-demethylubiquinone-9 3-methyltransferase [Verminephrobacter
           eiseniae EF01-2]
 gi|121554699|gb|ABM58848.1| 3-demethylubiquinone-9 3-methyltransferase [Verminephrobacter
           eiseniae EF01-2]
          Length = 236

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 14/144 (9%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L+W+    +     +L++ CG G  +  +AR    VL +++A  S+  A+ + 
Sbjct: 33  HQINPLRLDWIDGLCELSGKRVLDVGCGGGILTDAMARKGADVLGIDLASKSLCVAQLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                 NV+   +S++   Q      +     ++  H     ++           A   +
Sbjct: 93  LDAGTKNVQYRELSAEALAQEQPASFDAVTCMEMLEHVPEPASVV---------HACSAL 143

Query: 312 VQAYPHILYISCNPDSLCRDLSIL 335
           V+    + +      +L R+    
Sbjct: 144 VKPGGWVFF-----STLNRNAKAF 162


>gi|82411929|gb|ABB76038.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
          Length = 321

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 58/174 (33%), Gaps = 31/174 (17%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L    G   D+L+  CG+G  ++  L      V+ ++I   +VEA+  N   N  +
Sbjct: 172 LEW-LDENLGGGEDVLDYGCGSGILAIAALKMGAHHVVGIDIDPQAVEASCQNARLNQCS 230

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
             +I      EF   M    +  R       +     I  +P    L        +    
Sbjct: 231 ETEI------EFHTQMAERTDTERG---GWANIVVANILANP-LIMLAPILTHAARPGGR 280

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM----ECGVLLV--RK 365
           I  +S     L      +   +       FD      H+    E  VLL   RK
Sbjct: 281 IA-LS---GILAEQAEEVMAAYQ----QSFDM-----HIALNREGWVLLTGARK 321


>gi|322503822|emb|CBZ38908.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 514

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 212 DLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G   + LA+H     V A++I   +V  +R N   N ++  +   M S  F
Sbjct: 305 RILDVCCGTGCIGVALAKHLPSAVVTALDILPEAVRVSRENAMRNGISPARYSAMESDMF 364

Query: 270 TQAMRREREFNRLKDIDIHSYRF------------KTIFVDPP 300
           +  +  +         D+   R               I  +PP
Sbjct: 365 SCFLEGQVSGQPGDSADLSEDRPFGTVKDAYAGTYDVIVSNPP 407


>gi|293192305|ref|ZP_06609416.1| putative methyltransferase small domain protein [Actinomyces
           odontolyticus F0309]
 gi|292820220|gb|EFF79214.1| putative methyltransferase small domain protein [Actinomyces
           odontolyticus F0309]
          Length = 204

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFS--LVLARHFDRVLAVEIAKPSVEAARYNIA 252
              +LE  +A      G  L+L CG G  +  + L      V AV++   +V+  + N  
Sbjct: 47  TRQLLE--IAPDLPEDGTFLDLGCGWGPIATIMSLESPNADVWAVDVNSRAVDLTQRNAQ 104

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +N    V+   + ++E   + +                RF  I+ +PP     DA   M+
Sbjct: 105 SNGAKGVR--ALKAEEALTSSQE------------SDTRFDVIWSNPPVRVGKDAMHEML 150

Query: 313 QAY 315
            A+
Sbjct: 151 LAW 153


>gi|127800251|gb|AAH79303.2| Trmt12 protein [Rattus norvegicus]
          Length = 437

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 61/175 (34%), Gaps = 13/175 (7%)

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
            LE  L     +   L   S+       + RL  + W   A  L     A++ ++   G 
Sbjct: 115 ELEADLPRSWQRHGDLMLLSEDCFQATQWKRLEPELWETVASALGVQRLAKRGRVLPDGT 174

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAGINVHMLEWVLAATKGIQGD 212
              T   L  D+        G    +   +   SF         ++ E +  A+    G+
Sbjct: 175 RTPTVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSF--------GNITEKLRVASLSCAGE 226

Query: 213 LL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           +L +LY G G F+L    H     V A E    +V A R N+  N V +   +  
Sbjct: 227 VLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRKNLEINGVADRCQIHF 281


>gi|308176885|ref|YP_003916291.1| methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744348|emb|CBT75320.1| putative methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 201

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 22/121 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +L      +G +L++ CG G  +L  A       V  V++ + S++ AR N  A  ++NV
Sbjct: 50  LLQYVPTPRGRILDIGCGWGPITLTAAEQSPDSEVYGVDVNERSIDLARLNATAFGLSNV 109

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
             V  S                  D    S +F TI+ +PP R G D     ++   P +
Sbjct: 110 --VVGS-----------------PDSIDPSLQFDTIWSNPPIRIGKDALHELLMLWLPRL 150

Query: 319 L 319
            
Sbjct: 151 A 151


>gi|310658220|ref|YP_003935941.1| hypothetical protein CLOST_0911 [Clostridium sticklandii DSM 519]
 gi|308824998|emb|CBH21036.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 289

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 22/148 (14%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNG 221
           + ER T++ + L +     +F           +   M++ +  A + I+  +L L+   G
Sbjct: 71  IPERWTISYKGLSFYIKPTAFKHTGLFPEQAANWSWMMDKISKANRPIK--VLNLFAYTG 128

Query: 222 NFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRERE 278
             +   +    + V  V+ +K  V  A+ N   + ++N  ++ +     +F Q     RE
Sbjct: 129 GATCAASYAGAEEVCHVDASKGMVAWAKENAELSGLSNNKIRYIVDDCFKFVQ-----RE 183

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
             R         ++  + +DPP  G   
Sbjct: 184 IRR-------GNKYDAVIMDPPSYGRGP 204


>gi|290508965|ref|ZP_06548336.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Klebsiella sp. 1_1_55]
 gi|289778359|gb|EFD86356.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Klebsiella sp. 1_1_55]
          Length = 282

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV++   +V  A  N A   
Sbjct: 98  LVEQALARLPAAPCHILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAAHLD 157

Query: 256 VNNVKIVRMS 265
           + NV I +  
Sbjct: 158 IANVTIRQSD 167


>gi|269986472|gb|EEZ92757.1| methylase [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 196

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK- 260
           +L A K   GD+L++  G+G   L  AR  + V  V+I   +++A  YN   N ++N + 
Sbjct: 20  LLNAVKYAHGDVLDMCAGSGIIGLNAARLANTVPFVDINPKAIKAIEYNARKNGISNFEC 79

Query: 261 -----IVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
                   +  ++F           +  +     Y
Sbjct: 80  INSDLFYALDKRKFDIIYANPPYLPKKMEKGWIGY 114


>gi|312797554|ref|YP_004030476.1| methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312169329|emb|CBW76332.1| Methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454]
          Length = 448

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L        D+L  +C  G FSL  L     RV++++ +  +++ AR N+A N  +  
Sbjct: 264 RWLVQQHAAGRDVLNCFCYTGGFSLAALRGGASRVVSIDSSGEALQVARANLAVNDFDPA 323

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +     +  F       +   +L D      RF  I +DPP+     +      +AY  I
Sbjct: 324 RAQWHDADAF-------KTLRQLYD---AGERFDLIVLDPPKFAPSREHVARAARAYKDI 373

Query: 319 LYISCNPDSLC--RDLSILSTTHTIERLALFDQF 350
                N       R   +L  T++       D F
Sbjct: 374 -----NLSGFKLLRPGGLL-ATYSCSGAIDMDLF 401


>gi|325981710|ref|YP_004294112.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Nitrosomonas sp. AL212]
 gi|325531229|gb|ADZ25950.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Nitrosomonas sp. AL212]
          Length = 278

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 20/120 (16%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
              ++EW L      +   +L+L  G+G   + +A+H    +V+AV+++  +++  + N+
Sbjct: 93  TELLVEWALELIPSQKFCKVLDLGTGSGAIGISIAKHRPQSQVIAVDLSPAAIDVCQSNV 152

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               V N+ ++R +             F+ L        +F  I  +PP    DD  +  
Sbjct: 153 EILEVANLNVIRGN------------WFDEL-----SGEKFDLIVSNPPYVAEDDPHLQQ 195


>gi|146104511|ref|XP_001469847.1| hypothetical protein [Leishmania infantum]
 gi|134074217|emb|CAM72959.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 514

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 212 DLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G   + LA+H     V A++I   +V  +R N   N ++  +   M S  F
Sbjct: 305 RILDVCCGTGCIGVALAKHLPSAVVTALDILPEAVRVSRENAMRNGISPARYSAMESDMF 364

Query: 270 TQAMRREREFNRLKDIDIHSYRF------------KTIFVDPP 300
           +  +  +         D+   R               I  +PP
Sbjct: 365 SCFLEGQVSGQPGDSADLSEDRPFGTVKDAYAGTYDVIVSNPP 407


>gi|86159623|ref|YP_466408.1| type 12 methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776134|gb|ABC82971.1| Methyltransferase type 12 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 198

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 12/124 (9%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QP       ++E + A      G  L+L CG G  ++ LA H  +V  V++   ++  AR
Sbjct: 19  QPLPPELSALVEGLRAR---PPGRALDLGCGRGAHAVYLASHGWKVTGVDLVPAALAKAR 75

Query: 249 YNIAANHVNNVKIVRMSSKEF--------TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                  V+ V+ +                  +     F+ L D +  +Y      +  P
Sbjct: 76  QRATDAGVD-VQFLDGDVTRLDTLGLSPGYDLLLDAGCFHGLSDPERAAYARGVTALRAP 134

Query: 301 RSGL 304
           R+ +
Sbjct: 135 RAAM 138


>gi|316972896|gb|EFV56542.1| tRNA (guanine-N(1)-)-methyltransferase [Trichinella spiralis]
          Length = 421

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 94/275 (34%), Gaps = 30/275 (10%)

Query: 81  LLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR-LLDDAWRECAIRL 138
           L I++  IE+      L+ +L A L      +S S    +  +  +  L          +
Sbjct: 96  LQIDSREIEISYDNWSLDDILNAVLPDGQSFSSFSLIGHIAHLNLKEPLLPFKNVIGKDV 155

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERL-------TVAGRTLIYRQIENS----- 186
             A    K  + L      T +    D +++                + R  EN      
Sbjct: 156 LKARRVIKADVLLDKVPKCTTVVNKMDIIEDEFRNLRFEHLSGVMEYVTRVRENGCTYEL 215

Query: 187 -FTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            F+Q   N  +        L         + +++ G G F +  A+   RV A ++    
Sbjct: 216 DFSQVFWNPRLGTE--HQRLVNCFQRGDCVFDVFAGVGPFVIPAAKKRCRVYANDLNPKC 273

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE------REFNRLKDIDIHSYRFKTIFV 297
           +   + N   N V  +++      EF +A          RE    K   I +     +  
Sbjct: 274 IHWLQKNCRMNKVK-IEMYNEDGSEFLKAYCSHELAKLCRENFPGKCHFIMNLPATAVTF 332

Query: 298 DPPRSG-LDDATVGMVQAYPHILYISCNPDSLCRD 331
            P   G +D++ +G V+ +PH +Y+ C   +  +D
Sbjct: 333 LPYFIGLMDNSEIGSVKHFPH-VYVHC--YTFSKD 364


>gi|296129408|ref|YP_003636658.1| methyltransferase small [Cellulomonas flavigena DSM 20109]
 gi|296021223|gb|ADG74459.1| methyltransferase small [Cellulomonas flavigena DSM 20109]
          Length = 205

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 24/128 (18%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              +L  V A      GDLL+L CG G  +L LA      RV AV++ + +++  R N A
Sbjct: 53  TQVLLRTVPA--PPATGDLLDLGCGWGPVALTLALLSPDARVWAVDVNERALDLVRRNAA 110

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
              + NV                        D       F  ++ +PP R G       +
Sbjct: 111 RLGLGNVVAAT-------------------PDDVPVDVAFAALWSNPPVRIGKPALRELL 151

Query: 312 VQAYPHIL 319
           ++  P + 
Sbjct: 152 LRWLPRVA 159


>gi|150010265|ref|YP_001305008.1| putative protoporphyrinogen oxidase [Parabacteroides distasonis
           ATCC 8503]
 gi|255012466|ref|ZP_05284592.1| putative protoporphyrinogen oxidase [Bacteroides sp. 2_1_7]
 gi|149938689|gb|ABR45386.1| putative protoporphyrinogen oxidase [Parabacteroides distasonis
           ATCC 8503]
          Length = 318

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 26/176 (14%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           I   + ++      + L+R  + ++  L++      + L   + L D  +     + + L
Sbjct: 8   IRNSLKDIYPPGEAQALVRLIMERVCGLSTHQ----LLLGKGKELSDTEKFKIKEIVEGL 63

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
              K    L+G A         D+      V    LI R                ++E +
Sbjct: 64  RLYKPIQYLLGIA---------DFYGMEFKVTPDVLIPRPE-----------TAELVERI 103

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV 256
           +   +G    +L++  G+G  ++ LA+H     V AV+I+  ++  A  N   N V
Sbjct: 104 ITDYQGQAPRILDIGTGSGCIAISLAKHLPEAEVAAVDISPEALAVAEENARMNQV 159


>gi|89900073|ref|YP_522544.1| HemK family modification methylase [Rhodoferax ferrireducens T118]
 gi|89344810|gb|ABD69013.1| modification methylase, HemK family [Rhodoferax ferrireducens T118]
          Length = 280

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 21/127 (16%)

Query: 195 NVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVL-ARHFD-RVLAVEIAKPSVEAARY 249
              ++EW L   +   G    +L+L  G+G  +L L A   + RV AV+ +  ++  AR 
Sbjct: 95  TETLVEWALDVLQAPTGTAPAVLDLGTGSGAIALALKATRPELRVSAVDYSADALAVARA 154

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N     +  V+  + +                L  +     RF  I  +PP     D  +
Sbjct: 155 NAQRLGLA-VQFSQGA---------------WLAGLAQPDARFDAIVSNPPYVAAQDKHL 198

Query: 310 GMVQAYP 316
             +   P
Sbjct: 199 DALTFEP 205


>gi|21220225|ref|NP_626004.1| hypothetical protein SCO1731 [Streptomyces coelicolor A3(2)]
 gi|256788661|ref|ZP_05527092.1| hypothetical protein SlivT_29592 [Streptomyces lividans TK24]
 gi|289772556|ref|ZP_06531934.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|5531441|emb|CAB50946.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
 gi|289702755|gb|EFD70184.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 205

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A +       + +      GD+L+L CG G+ SL+ A    RV  V+++   VE AR  +
Sbjct: 33  AEVRRAWAARLASWLPAPPGDVLDLGCGTGSLSLLAAEQGHRVTGVDLSPAMVELARTKL 92

Query: 252 AANHVNNVKIVRMSSK 267
           A     +   +   + 
Sbjct: 93  AGR---DAVFLTGDAA 105


>gi|78188211|ref|YP_378549.1| Mg-protoporphyrin IX methyl transferase [Chlorobium chlorochromatii
           CaD3]
 gi|78170410|gb|ABB27506.1| Magnesium protoporphyrin O-methyltransferase [Chlorobium
           chlorochromatii CaD3]
          Length = 232

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y D++L+    T+          Q +A +     +W+          +L+  CG G FS+
Sbjct: 31  YGDDKLSTVRNTVR---------QGHAVMMDKAFDWLEKLRLPKGATVLDAGCGTGLFSI 81

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKD 284
            LA+   +V +V+IA   VE AR       V  N+     + +  +        F+ L  
Sbjct: 82  RLAKAGYKVKSVDIASQMVEKARAEATKQGVAGNMDFEVNTIEAVSGTYDAVVCFDVLIH 141

Query: 285 IDIHSY 290
                +
Sbjct: 142 YPAEGF 147


>gi|294494828|ref|YP_003541321.1| methyltransferase type 11 [Methanohalophilus mahii DSM 5219]
 gi|292665827|gb|ADE35676.1| Methyltransferase type 11 [Methanohalophilus mahii DSM 5219]
          Length = 278

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           DE++    R   Y      F Q +      + + +          +L++  G G+ ++ L
Sbjct: 23  DEQVQQPDRWGTY-ANAKRFWQSSRKSGKRLEKALQDIKHDSDSRILDIGAGPGSMAIPL 81

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A+    V AVE A    E  + NIA  +++NV  ++ + ++         E + + D+ I
Sbjct: 82  AQRVSHVTAVEPADGMTEVLKENIADYNLDNVTCIQKNWEDV-----AVEELDGMYDVII 136

Query: 288 HSYRFKT 294
            SY    
Sbjct: 137 ASYSLHV 143


>gi|260589986|ref|ZP_05855899.1| methyltransferase domain protein [Blautia hansenii DSM 20583]
 gi|260539793|gb|EEX20362.1| methyltransferase domain protein [Blautia hansenii DSM 20583]
          Length = 273

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           P    N  + +            +L++ CG G FSL LA+   +V   +++   + AA+ 
Sbjct: 38  PTPEENPFLKQVYEEMQIDEHTRILDIGCGAGRFSLALAKSGAQVTGTDVSSEMIMAAKE 97

Query: 250 NIAANHVNNVKIVRMS 265
                H  NV      
Sbjct: 98  LAEKEHQKNVSFFHAD 113


>gi|162139860|ref|YP_413430.2| ribosomal protein L11 methyltransferase [Nitrosospira multiformis
           ATCC 25196]
          Length = 304

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 58/174 (33%), Gaps = 31/174 (17%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L    G   D+L+  CG+G  ++  L      V+ ++I   +VEA+  N   N  +
Sbjct: 155 LEW-LDENLGGGEDVLDYGCGSGILAIAALKMGAHHVVGIDIDPQAVEASCQNARLNQCS 213

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
             +I      EF   M    +  R       +     I  +P    L        +    
Sbjct: 214 ETEI------EFHTQMAERTDTERG---GWANIVVANILANP-LIMLAPILTHAARPGGR 263

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM----ECGVLLV--RK 365
           I  +S     L      +   +       FD      H+    E  VLL   RK
Sbjct: 264 IA-LS---GILAEQAEEVMAAYQ----QSFDM-----HIALNREGWVLLTGARK 304


>gi|328953306|ref|YP_004370640.1| ribosomal L11 methyltransferase [Desulfobacca acetoxidans DSM
           11109]
 gi|328453630|gb|AEB09459.1| ribosomal L11 methyltransferase [Desulfobacca acetoxidans DSM
           11109]
          Length = 275

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 9/141 (6%)

Query: 165 DYVDERLTVAGRTLIYRQIEN-SF---TQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
            + +E        LI R     +F     P   + + ++  +          +L+L  G 
Sbjct: 92  PFWEEPHPQPEEQLI-RLDPGVAFGSGFHPTTQMCLRLISRLY--HTTTLPTVLDLGTGT 148

Query: 221 GNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRERE 278
           G  SL  LA    R+LAV+    ++  A+ N   N   N +  V     ++         
Sbjct: 149 GILSLACLAMGAKRILAVDNHTLAIATAQKNAVYNRAENHITFVCGDVLDYLATPADLVL 208

Query: 279 FNRLKDIDIHSYRFKTIFVDP 299
            N    +       +  F  P
Sbjct: 209 ANIFFSVLSSMLDQEVFFNKP 229


>gi|297561040|ref|YP_003680014.1| methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845488|gb|ADH67508.1| Methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 265

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           LL++ CG G+ +  LAR     RV AV+ +  +VE AR +      +N++       + 
Sbjct: 38  LLDVGCGPGSITADLARRVAPGRVTAVDASAEAVELARASAREAGADNIEFRVGDVHDL 96


>gi|237654104|ref|YP_002890418.1| ribosomal protein L11 methyltransferase [Thauera sp. MZ1T]
 gi|237625351|gb|ACR02041.1| ribosomal protein L11 methyltransferase [Thauera sp. MZ1T]
          Length = 300

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+          +L+  CG+G   +  A+     VL ++I + +VEAAR N A NH  
Sbjct: 157 LEWLCEVVTP-GCSVLDYGCGSGILGIAAAKLGAGAVLGIDIDEKAVEAARDNAARNHAA 215


>gi|326382339|ref|ZP_08204031.1| putative methyltransferase [Gordonia neofelifaecis NRRL B-59395]
 gi|326199069|gb|EGD56251.1| putative methyltransferase [Gordonia neofelifaecis NRRL B-59395]
          Length = 247

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           +YR   +S     A +   M+  +L  +  I G ++EL  G+G  S+  A    RV A++
Sbjct: 32  VYRPSTDS-----ALLCSRMVAELLDVSSPI-GTVIELCAGSGIASVYAASAGARVTAID 85

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               +  A R N +AN V  V +VR   +        +        +            +
Sbjct: 86  DTAAAERAVRANASANGV-MVDVVRADVRNLPPLPAADLVVANPPYVPAPPTAPPGHAWN 144

Query: 299 PPRSGLDDATVGMVQAYPHIL 319
               G D     M+   P ++
Sbjct: 145 AGPDGRD-VLDAMIAVLPRLV 164


>gi|198434782|ref|XP_002127192.1| PREDICTED: similar to tRNA methyltransferase 12 homolog [Ciona
           intestinalis]
          Length = 294

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 85/251 (33%), Gaps = 13/251 (5%)

Query: 80  SLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR 139
           +LL NA  I++   + ++ L R      D +   S+   + +      +  W+  A  L 
Sbjct: 13  NLLKNAWNIDLNDDL-IKDLPRKWEKHGDLVMLPSNCFHLKVWAQLPQEQLWKYVAEALN 71

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
               A++  I      +   + L  D              +   ++ F+  N      + 
Sbjct: 72  VNRVAQQKNILNSDYRSPQVVMLLGDDTWVTHIDNRIIYKFDITKSMFSSGN------IT 125

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           E +  A     G+ +++++ G G F+L L        V A E    SV A + N+  N V
Sbjct: 126 EKIRMANLNCDGEIVIDMFAGIGYFTLPLLVHSKARFVHACEWNPDSVTALKANLLLNKV 185

Query: 257 NN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVDPPRSGLDDATVGMVQ 313
            +  KI    ++        +R    L      SY    K + V      +      +  
Sbjct: 186 ESKCKIYEGDNRVVCPTEVGDRIILGLIPTAEQSYIAACKALKVKGGIFHIHHNVTSIKN 245

Query: 314 AYPHILYISCN 324
                +  SCN
Sbjct: 246 NDTEKIVKSCN 256


>gi|51246577|ref|YP_066461.1| HemK methylase [Desulfotalea psychrophila LSv54]
 gi|50877614|emb|CAG37454.1| related to HemK methylase [Desulfotalea psychrophila LSv54]
          Length = 291

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 15/107 (14%)

Query: 173 VAGRTLIYRQIENSF----TQPNAGI------NVHMLEWVLA---ATKGIQGDLLELYCG 219
           V    L Y   E  F     + N+ +         MLE VLA   A +     +L+L  G
Sbjct: 65  VQREPLAYILGEQEFWSLDFKVNSHVLIPRPETEFMLEKVLASAGAWRESVTPVLDLCTG 124

Query: 220 NGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +G  ++VLA+   R V+AV+I++ +++ AR+N   +HV  +  +R  
Sbjct: 125 SGVIAVVLAKELGRPVVAVDISEEALQVARFNAHRHHVA-INFIRSD 170


>gi|300709636|ref|YP_003735450.1| methyltransferase [Halalkalicoccus jeotgali B3]
 gi|299123319|gb|ADJ13658.1| methyltransferase [Halalkalicoccus jeotgali B3]
          Length = 338

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFT 270
            +L+++ G G F+L +AR    V A+E    +      N   N V   +   R   ++  
Sbjct: 190 RVLDMFAGIGYFTLPMARAGAHVSAIERNPVAFRYLLENAVLNGVEERIDAYRADCRDVE 249

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                       +  D        +         DD  + M +A P 
Sbjct: 250 VTGVDRVVMGYYEAHDYLDRALDAL--------RDDGVLHMHEATPE 288


>gi|229074162|ref|ZP_04207208.1| hypothetical protein bcere0024_880 [Bacillus cereus Rock4-18]
 gi|228708932|gb|EEL61059.1| hypothetical protein bcere0024_880 [Bacillus cereus Rock4-18]
          Length = 199

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               ++G++L++ CG G   L LA+ F    +  V++ + ++  A+ N A N + NV+I+
Sbjct: 54  EMPDVKGNVLDVGCGYGPIGLSLAKEFQDREIHMVDVNERALGLAKENAANNKIENVRIL 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 114 QSSVYENVDG------------------KYAVILSNPPIRAGKDIVHEILEKAVEYLV 153


>gi|291442928|ref|ZP_06582318.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291345875|gb|EFE72779.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 213

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 192 AGINVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
              +  +L   +     G   DLL+L  G+G  +L  AR   RV AV+I++ +V +AR N
Sbjct: 9   PQTDTLLLALAMRREGIGPGTDLLDLCTGSGALALHAARLGARVTAVDISRRAVASARLN 68

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A   +     V +   +  +A+                  F  +  +PP
Sbjct: 69  TALARLP----VTVRRGDLLRAL--------------PGRTFDAVVSNPP 100


>gi|239939498|ref|ZP_04691435.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239985987|ref|ZP_04706651.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
          Length = 255

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 192 AGINVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
              +  +L   +     G   DLL+L  G+G  +L  AR   RV AV+I++ +V +AR N
Sbjct: 51  PQTDTLLLALAMRREGIGPGTDLLDLCTGSGALALHAARLGARVTAVDISRRAVASARLN 110

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A   +     V +   +  +A+                  F  +  +PP
Sbjct: 111 TALARLP----VTVRRGDLLRAL--------------PGRTFDAVVSNPP 142


>gi|222635010|gb|EEE65142.1| hypothetical protein OsJ_20224 [Oryza sativa Japonica Group]
          Length = 772

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 24/136 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARY 249
             I   ML     +   I G ++ +  CG G  S+  +    + V+ ++I   S+E A+ 
Sbjct: 30  PHIASRMLYTAENSFDDITGKVVADFGCGCGTLSVASSLLDAEHVVGIDIDPQSLELAQE 89

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
           N A   ++ + +++                  +K++++      T+ ++PP    R G D
Sbjct: 90  NAADLELD-IDLIQCD----------------IKNLNLRGLLVDTVVMNPPFGTSRKGAD 132

Query: 306 DATVGM-VQAYPHILY 320
              + M ++     +Y
Sbjct: 133 MEFISMGMKVATRAVY 148


>gi|54027757|ref|YP_121998.1| putative methyltransferase [Nocardia farcinica IFM 10152]
 gi|54019265|dbj|BAD60634.1| putative methyltransferase [Nocardia farcinica IFM 10152]
          Length = 306

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L    G  G L++L CG G  ++ L   F  V AV++    +E  R         N+   
Sbjct: 64  LINRVGEGGVLVDLACGTGEIAIPLHTRFGHVYAVDLEPDMIEVGRAKAEQAGAINISWS 123

Query: 263 RMSSKEFT 270
              +++  
Sbjct: 124 TGKAEDLV 131


>gi|183600473|ref|ZP_02961966.1| hypothetical protein PROSTU_04049 [Providencia stuartii ATCC 25827]
 gi|188019957|gb|EDU57997.1| hypothetical protein PROSTU_04049 [Providencia stuartii ATCC 25827]
          Length = 272

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +++ +           LL++ CG G+  L LA+HF  ++ ++ ++  ++AA+    A  +
Sbjct: 47  YLIRFRELMDFTGAKTLLDVGCGPGSVCLALAKHFTTIIGIDYSQGMLDAAQERAKAMDI 106

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           NNV+          + +  E  + +L  +DI      T+  D
Sbjct: 107 NNVRF---------EQLAWEDNWAQLPKVDIAVASRSTLVDD 139


>gi|126180304|ref|YP_001048269.1| protein of unknown function Met10 [Methanoculleus marisnigri JR1]
 gi|125863098|gb|ABN58287.1| methyltransferase [Methanoculleus marisnigri JR1]
          Length = 304

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L+++ G G F++ LA     V+A ++   +V     NIA N   NV  V   +   
Sbjct: 164 RVLDMFAGVGPFAITLAGKAGIVVAADLNPAAVHLLIENIALNRAGNVIPVLADAAHL 221


>gi|307243164|ref|ZP_07525337.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493425|gb|EFM65405.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 289

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 21/146 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNGNF 223
           ++ T+    L ++     F           +   M++ +  A + I+  +L L+   G  
Sbjct: 73  DQWTINYGPLKFKIKPTGFKHTGLFPEQAANWDWMIDKIRTAKRPIK--VLNLFAYTGGA 130

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNR 281
           S+  A     V  V+ AK  V  A+ NI  + + +  V+ +     +F      ERE  R
Sbjct: 131 SVACAYAGAEVCHVDAAKGMVNWAKENIDLSGLKDRTVRFIVDDVVKFV-----EREIRR 185

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDA 307
                    ++  I +DPP  G    
Sbjct: 186 -------GNKYDAIIMDPPSYGRGPK 204


>gi|212711978|ref|ZP_03320106.1| hypothetical protein PROVALCAL_03054 [Providencia alcalifaciens DSM
           30120]
 gi|212685500|gb|EEB45028.1| hypothetical protein PROVALCAL_03054 [Providencia alcalifaciens DSM
           30120]
          Length = 277

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANH 255
           ++E  L      +  +L+L  G G   L LA       V+ V+    +V  A+ N     
Sbjct: 98  LVEQALVRLPNAECRILDLGTGTGAIGLALASELPNSCVVGVDFNPEAVALAQRNQQRLA 157

Query: 256 VNNVKIVRMS 265
           + N++  +  
Sbjct: 158 LPNIQFSQSD 167


>gi|220907316|ref|YP_002482627.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219863927|gb|ACL44266.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 266

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 200 EWVLAATKGIQG-DLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANH 255
           E +L       G  ++E+ CG GN S  LAR       V+ V+++   VE AR    A  
Sbjct: 29  EQLLQRAGLQAGMRVVEIGCGTGNMSCWLARQVGGNGSVIGVDVSPAQVEQARLQAEAFG 88

Query: 256 VNNVKIVRMSS 266
           + NV      +
Sbjct: 89  LTNVSFAVADA 99


>gi|213964542|ref|ZP_03392742.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Corynebacterium amycolatum SK46]
 gi|213952735|gb|EEB64117.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Corynebacterium amycolatum SK46]
          Length = 314

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGI------QGDLLELYCGNGNFSLVLARH 230
           +L  +     F          + +W +   + +      +  +++L  G+G  +L +A  
Sbjct: 102 SLELQVGPGVF--VPRPETELLAQWAIDRARELVASGVVKPKIVDLCTGSGALALAIADA 159

Query: 231 FDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
                V+AVE+++ +   A  NI       V+++     +       ++  +   ++   
Sbjct: 160 VPEADVVAVELSERARAWAAKNIETYGDGRVRLIAGDVTD-------DQLIDDGGELADW 212

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                 +  +PP    D      V+A PH
Sbjct: 213 VGETDIVVSNPPYVPEDTEVTPEVRADPH 241


>gi|313898494|ref|ZP_07832031.1| putative 23S rRNA m5C1962 methyltransferase [Clostridium sp. HGF2]
 gi|312956876|gb|EFR38507.1| putative 23S rRNA m5C1962 methyltransferase [Clostridium sp. HGF2]
          Length = 400

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 17/121 (14%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            VL         +++ +   G F+L  A  +  +V+AV++++ +++ A  N   NH+ N 
Sbjct: 219 RVLLREMAHGKRVMDCFSHTGGFALNAAYGNASQVVAVDVSQTALDQAYANAKLNHLENR 278

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH 317
           +  V+    ++    +                +F  I +DPP       T+      Y  
Sbjct: 279 ISFVKADVFKYLDTCKE--------------GQFDIIVLDPPAFTKSRRTIDHAYSGYKR 324

Query: 318 I 318
           I
Sbjct: 325 I 325


>gi|330961729|gb|EGH61989.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 277

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G   L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFASAQVLDLGTGTGAIGLALANERKQWKVTAVDRVAEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              H+NN +I                 F       +   +F  I  +PP
Sbjct: 154 QRLHLNNAEI-----------------FESHWFSGLQGRQFDLIISNPP 185


>gi|264677569|ref|YP_003277475.1| ubiquinone biosynthesis O-methyltransferase [Comamonas testosteroni
           CNB-2]
 gi|299532463|ref|ZP_07045854.1| 3-demethylubiquinone-9 3-methyltransferase [Comamonas testosteroni
           S44]
 gi|262208081|gb|ACY32179.1| ubiquinone biosynthesis O-methyltransferase [Comamonas testosteroni
           CNB-2]
 gi|298719548|gb|EFI60514.1| 3-demethylubiquinone-9 3-methyltransferase [Comamonas testosteroni
           S44]
          Length = 237

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 44/105 (41%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L+W+ A        +L++ CG G  +  +AR   +V+ +++A  ++  A+ + 
Sbjct: 33  HQINPLRLDWINAQAPLANQRVLDVGCGGGILADSMARKGAKVVGIDLATKALRVAQLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
                 N++   +S ++  Q      +     ++  H     +I 
Sbjct: 93  LEAGTPNIQYHEVSVEQLAQEQPASFDVVTCMEMLEHVPDPASIV 137


>gi|119867652|ref|YP_937604.1| methyltransferase type 11 [Mycobacterium sp. KMS]
 gi|126434151|ref|YP_001069842.1| methyltransferase type 11 [Mycobacterium sp. JLS]
 gi|119693741|gb|ABL90814.1| Methyltransferase type 11 [Mycobacterium sp. KMS]
 gi|126233951|gb|ABN97351.1| Methyltransferase type 11 [Mycobacterium sp. JLS]
          Length = 210

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L     I G +L+  CG G  +++L      VL V+ +  +VE AR N AA  V N +  
Sbjct: 34  LERRGAISGAVLDAGCGAGEHTILLTGLGYDVLGVDFSARAVELARANAAARGV-NARFE 92

Query: 263 RMSSKEFTQAMRRE-----REFNRLKDIDIHSYRFKTIFVDPP 300
              +       R +       F+   DID   Y      V  P
Sbjct: 93  VADATRLDGGPRFDTVVDSALFHVFDDIDRRRYVDSLASVCRP 135


>gi|295107557|emb|CBL05100.1| SAM-dependent methyltransferases related to tRNA
           (uracil-5-)-methyltransferase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 263

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE-- 268
             +  L C  G  +L LA    RV  V++A  +V  A+       + NV+ V     +  
Sbjct: 47  KRVAHLQCNVGFDTLALAESAARVTGVDLAPENVRCAQRLAEDFGIGNVEFVEADVCDLP 106

Query: 269 ------FTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                 F  A   E     L D+D  +   + + VD
Sbjct: 107 ASLNGRFDVAFTSEGVLGWLPDLDAWARGVRRLLVD 142


>gi|320106604|ref|YP_004182194.1| type 11 methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319925125|gb|ADV82200.1| Methyltransferase type 11 [Terriglobus saanensis SP1PR4]
          Length = 277

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 2/115 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V       +  +L++ CG GN ++ LAR    V  V+IA   +  AR   AA  +  V  
Sbjct: 39  VHRLALPPESRVLDVACGTGNLAIPLARQGCVVTGVDIAPNLLVQARERAAAEGLT-VSF 97

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
               ++E         +        + + R + +  +  R       + M    P
Sbjct: 98  DEGDAEEL-PYDDETFDAVVTMFGAMFAPRPEVVTAELARVLKPGGLLAMANWNP 151


>gi|289596923|ref|YP_003483619.1| Methyltransferase type 11 [Aciduliprofundum boonei T469]
 gi|289534710|gb|ADD09057.1| Methyltransferase type 11 [Aciduliprofundum boonei T469]
          Length = 385

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 16/110 (14%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + ++ CG G  ++  AR   +VL V+I K  +E AR N     + N++ +         
Sbjct: 93  TIADISCGVGMQAIFFARTNRKVLCVDIDKRRIEYARRNAKTYGIKNMQFICGDC----- 147

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATVGMVQAYPHIL 319
                       +I   + R+  IF DP R     +     ++ +   I+
Sbjct: 148 ---------CSNEIYNIAKRYDIIFSDPARSEEEKERDLRNLLPSPLKII 188


>gi|146328946|ref|YP_001209003.1| HemK family modification methylase [Dichelobacter nodosus VCS1703A]
 gi|146232416|gb|ABQ13394.1| modification methylase, HemK family [Dichelobacter nodosus
           VCS1703A]
          Length = 276

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 20/131 (15%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              +++  LA         +++L  G+G  +L +A  R   RVLAV+ +  ++  A+ N 
Sbjct: 94  TEQLVDAALAKIPPQDCYRVIDLGTGSGAIALAIAAERPHCRVLAVDKSWDALRVAQENA 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               + NV  V                        I   R   I  +PP     D  +  
Sbjct: 154 RHLQLANVHFVLSD-----------------WLTAIADARADMIVSNPPYIDAHDEHLAA 196

Query: 312 VQAYPHILYIS 322
           +   P +  +S
Sbjct: 197 LAYEPQMALVS 207


>gi|15668567|ref|NP_247365.1| cobalamin biosynthesis precorrin-8W decarboxylase CbiT
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2495954|sp|Q57836|CBIT_METJA RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|1591095|gb|AAB98376.1| cobalamin biosynthesis precorrin-8W decarboxylase (cbiT)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 183

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 37/67 (55%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++ CG+G  ++ +A+    V A++    ++E  + N+A  ++ N +I++  +++    
Sbjct: 39  VVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK 98

Query: 273 MRREREF 279
           +   + F
Sbjct: 99  LEFNKAF 105


>gi|329946298|ref|ZP_08293892.1| methyltransferase small domain protein [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328527590|gb|EGF54585.1| methyltransferase small domain protein [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 549

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+L CG G  +L L RH + V+A +I++ ++    +N A   V+ +   R  + +   
Sbjct: 188 TALDLGCGCGIQTLYLLRHAEHVVATDISERALAFTAFNAALAGVSVIDGPRPGA-DAGS 246

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A R E     L +  +   RF  I  +PP      A    
Sbjct: 247 AGRLELRLGSLLEP-VAGRRFDLIASNPPFVLTPPAVREA 285


>gi|229100900|ref|ZP_04231704.1| hypothetical protein bcere0019_1050 [Bacillus cereus Rock3-28]
 gi|228682479|gb|EEL36552.1| hypothetical protein bcere0019_1050 [Bacillus cereus Rock3-28]
          Length = 199

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               ++G++L++ CG G   L LA+ F    +  V++ + ++  A+ N A N + NV+I+
Sbjct: 54  QMPDVKGNVLDVGCGYGPIGLSLAKEFQDREIHMVDVNERALGLAKENAANNKIENVRIL 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 114 QSSVYENVDG------------------KYAVILSNPPIRAGKDIVHEILEKAVEYLV 153


>gi|145609305|ref|XP_001409361.1| hypothetical protein MGG_13406 [Magnaporthe oryzae 70-15]
 gi|145016692|gb|EDK01122.1| hypothetical protein MGG_13406 [Magnaporthe oryzae 70-15]
          Length = 264

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 11/148 (7%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAV 237
           +++  S+T  NA      L  +          +L++ CG GN +  LA+      RV  +
Sbjct: 6   KELAKSYTANNATQQNAGLFLIDRLAIRPGMHILDVGCGPGNITAHLAKLVGPTGRVAGI 65

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEF-------TQAMRREREFNRLKDIDIHSY 290
           + +K  +   +  +AA+   N       +++           +     F+ + D      
Sbjct: 66  DPSKERIALGQE-LAASTAPNASFAVGRAEDLSRFQDASFDVVYVNSTFHWIADQAAAMR 124

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            F  +     R G+   +     A+  I
Sbjct: 125 EFSRVLKPRGRLGISGGSGDTGSAHRRI 152


>gi|154346308|ref|XP_001569091.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134066433|emb|CAM44225.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 497

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 212 DLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G   + LA+H     V A++I   +V  +R N A N +   +   M S  F
Sbjct: 288 RILDVCCGTGCIGVALAKHLSTATVTALDILSEAVRVSRENAARNGIPPERYSAMESDMF 347

Query: 270 T-----QAMRREREFNRLKD-------IDIHSYRFKTIFVDPP 300
           +     QA     E   L D        D ++  +  I  +PP
Sbjct: 348 SCFLDEQASALPGERANLSDDRPMGTVKDTYAGTYDVIVSNPP 390


>gi|325983707|ref|YP_004296109.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosomonas sp. AL212]
 gi|325533226|gb|ADZ27947.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosomonas sp. AL212]
          Length = 217

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 182 QIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +I   F Q    +   M   +L          +LE+  G+G  + +LA     V +VEI 
Sbjct: 51  EIPLGFGQV--MLTPKMEARILQELHIRKTDKILEVGSGSGYMTALLADKGAHVYSVEII 108

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSK 267
                 A  N+ A+ + NV + +  + 
Sbjct: 109 PELKAMAEKNLKAHGIINVTLEQGDAA 135


>gi|254167591|ref|ZP_04874442.1| hypothetical protein ABOONEI_2925 [Aciduliprofundum boonei T469]
 gi|197623400|gb|EDY35964.1| hypothetical protein ABOONEI_2925 [Aciduliprofundum boonei T469]
          Length = 372

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 16/110 (14%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + ++ CG G  ++  AR   +VL V+I K  +E AR N     + N++ +         
Sbjct: 80  TIADISCGVGMQAIFFARTNRKVLCVDIDKRRIEYARRNAKTYGIKNMQFICGDC----- 134

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATVGMVQAYPHIL 319
                       +I   + R+  IF DP R     +     ++ +   I+
Sbjct: 135 ---------CSNEIYNIAKRYDIIFSDPARSEEEKERDLRNLLPSPLKII 175


>gi|108798553|ref|YP_638750.1| methyltransferase type 11 [Mycobacterium sp. MCS]
 gi|108768972|gb|ABG07694.1| Methyltransferase type 11 [Mycobacterium sp. MCS]
          Length = 197

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L     I G +L+  CG G  +++L      VL V+ +  +VE AR N AA  V N +  
Sbjct: 21  LERRGAISGAVLDAGCGAGEHTILLTGLGYDVLGVDFSARAVELARANAAARGV-NARFE 79

Query: 263 RMSSKEFTQAMRRE-----REFNRLKDIDIHSYRFKTIFVDPP 300
              +       R +       F+   DID   Y      V  P
Sbjct: 80  VADATRLDGGPRFDTVVDSALFHVFDDIDRRRYVDSLASVCRP 122


>gi|326510103|dbj|BAJ87268.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 454

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L C +G F+L  A+     V  ++ +  +++ A  NI  N ++  + +    ++ T
Sbjct: 280 RVLDLCCYSGGFALSAAKGGATNVTGIDSSGSALDLANENILLNKLD-AERISFLKEDAT 338

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             M+     N L D+         + +DPP+       +      
Sbjct: 339 AFMKGAISRNELWDL---------VILDPPKLAPRKKVLQSASGM 374


>gi|308070985|ref|YP_003872590.1| hypothetical protein PPE_04288 [Paenibacillus polymyxa E681]
 gi|305860264|gb|ADM72052.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 200

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 20/107 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + A     Q  +L++ CG G   L  A       V  V+I + +V+ A  N   N V NV
Sbjct: 50  IEAMQLPAQASVLDVGCGYGPIGLTAAALVPEGHVTMVDINERAVQLAIENAERNGVKNV 109

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
            I +                      ++ + RF  I  +PP R+G +
Sbjct: 110 TIKQSDL-----------------FAEVKNERFDVILTNPPIRAGKE 139


>gi|83592090|ref|YP_425842.1| modification methylase HemK [Rhodospirillum rubrum ATCC 11170]
 gi|83575004|gb|ABC21555.1| Modification methylase HemK [Rhodospirillum rubrum ATCC 11170]
          Length = 325

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRV-LAVEIAKPSVEAARYNIA 252
              ++E  LA  +G  G +L+L  G+G   L  LA     + L ++IA  +V  A  N  
Sbjct: 119 TETLVEAGLAVLEGCGGRILDLGTGSGCILLALLADRPGAIGLGIDIAPGAVRVALRNAR 178

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREF-----NRLKDIDIHSYRFKTIFVDPPRS 302
           A  +    +      ++  A+    +        +   DI +   +    DP R+
Sbjct: 179 ALGLERRALFA--VGDWAAAVAGPFDLIVSNPPYIPSADIAALEPEVARFDPSRA 231


>gi|251789677|ref|YP_003004398.1| modification methylase, HemK family [Dickeya zeae Ech1591]
 gi|247538298|gb|ACT06919.1| modification methylase, HemK family [Dickeya zeae Ech1591]
          Length = 283

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +++L  G G  +L +A  R   RV+ V+    +V  A +N     
Sbjct: 98  LVEHALAHLPAGASSVVDLGTGTGAIALAIAHERPDCRVVGVDRQHDAVVLASHNARRLE 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +NN + +                        +   RF  I  +PP
Sbjct: 158 INNAQFLPGD-----------------WFSPLAGQRFSLIVSNPP 185


>gi|225175076|ref|ZP_03729072.1| ribosomal protein L11 methyltransferase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225169252|gb|EEG78050.1| ribosomal protein L11 methyltransferase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 313

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 31/258 (12%)

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQ-IDYLTSQSDQAIV-TLIYHRLLDDA- 130
           DYF P +   +  MI +     L  L   K  + + +L       +    +  R +D+A 
Sbjct: 48  DYFPPAADAGHDNMITIRGYFPLSFLGSKKETELVSFLDGLPGFGLAPAQVMFREVDEAD 107

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W +   +            Q      K  I     +++E      + L  R    +    
Sbjct: 108 WEQAWKQ----------YWQPTPIGEKLVIMPA--WLNENPWPQRKVL--RLDPGAAFGT 153

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAAR 248
                  +   +L         +L+L CG+G  +L  AR      V+ V++ + ++ A+ 
Sbjct: 154 GTHETTRLCLEILEKVATEDTTMLDLGCGSGILALA-ARLLGIKDVMGVDVDEAAIRASL 212

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP------RS 302
            N   N + +V  +      F +   +E    R  D+   +     +           R 
Sbjct: 213 ENAKRNDMEDVPFIHADL--FAEEAWKEL---RAADVVTANLTADALLAITGRIRHVLRP 267

Query: 303 GLDDATVGMVQAYPHILY 320
           G      G+V      +Y
Sbjct: 268 GGLLIASGIVHDRAREVY 285


>gi|331701219|ref|YP_004398178.1| protein-(glutamine-N5) methyltransferase [Lactobacillus buchneri
           NRRL B-30929]
 gi|329128562|gb|AEB73115.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lactobacillus buchneri NRRL B-30929]
          Length = 282

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 21/115 (18%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              +++W+LA     +  +L++  G+G  ++ L  AR   +V A +I+ P+++ AR N  
Sbjct: 102 TEELVDWILADNSDSKLKVLDIGTGSGAIAIALKHARPHWQVFASDISLPAIKVARQNAI 161

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           ANH      +     +   A+                  F  I  +PP    D+ 
Sbjct: 162 ANH----TAIHFMVSDVFAAIDE---------------SFDVIVSNPPYIAKDEQ 197


>gi|296818557|ref|XP_002849615.1| Crg1p [Arthroderma otae CBS 113480]
 gi|238840068|gb|EEQ29730.1| Crg1p [Arthroderma otae CBS 113480]
          Length = 294

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 + + V +  +G     L+L CG+G  S  L+  F +V  ++ +   +E A  N+
Sbjct: 19  PEYPQKLYDMVFSYHQGAYNTCLDLGCGHGLVSRALSPRFKKVYGIDPSAGMIEQA-KNM 77

Query: 252 AANHVNNVKIVRMSSKEF 269
                 NV+ V+ +++  
Sbjct: 78  TTEQ--NVEFVQAAAESL 93


>gi|269978122|ref|ZP_06185072.1| 16S rRNA m2G1207 methyltransferase [Mobiluncus mulieris 28-1]
 gi|269933631|gb|EEZ90215.1| 16S rRNA m2G1207 methyltransferase [Mobiluncus mulieris 28-1]
          Length = 272

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 39/175 (22%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              +L  V    +G  G  +++ CG G  SLV+AR     RV+AV++   +++    N  
Sbjct: 115 TAVLLRKVPKLPEG--GVFVDVGCGWGPLSLVMARQRPAARVVAVDVNARALDLTAKNAR 172

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N + N++++  ++              +L D  +       I+ +PP     DA   M 
Sbjct: 173 ENGLGNLEVLAETAA-----------LAQLADGSV-----DVIWSNPPVRIGKDALHAMW 216

Query: 313 QAYPH------ILYI-------SCNPDSLCRD----LSIL--STTHTIERLALFD 348
            A+        + Y+       +    +  RD       L  S    + +L   D
Sbjct: 217 TAWRVKLRPGGVAYLVMGRNLGADTFAAWARDSGWETERLASSKGFRVLQLRPMD 271


>gi|227875232|ref|ZP_03993374.1| possible 16S rRNA methyltransferase [Mobiluncus mulieris ATCC
           35243]
 gi|227844137|gb|EEJ54304.1| possible 16S rRNA methyltransferase [Mobiluncus mulieris ATCC
           35243]
          Length = 282

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 65/175 (37%), Gaps = 39/175 (22%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              +L  V    +G  G  +++ CG G  SLV+AR     RV+AV++   +++    N  
Sbjct: 125 TAVLLRKVPKLPEG--GVFVDVGCGWGPLSLVMARQRPAARVVAVDVNARALDLTAKNAR 182

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N + N++++  ++              +L D  +       I+ +PP     DA   M 
Sbjct: 183 ENGLGNLEVLAETAA-----------LAQLADGSV-----DVIWSNPPVRIGKDALHAMW 226

Query: 313 QAYPH------ILYI-------SCNPDSLCRD----LSIL--STTHTIERLALFD 348
            A+        + Y+       +    +  RD       L  S    + +L   D
Sbjct: 227 TAWRVKLRPGGVAYLVMGRNLGADTFAAWARDSGWETERLASSKGFRVLQLRPMD 281


>gi|296130140|ref|YP_003637390.1| methyltransferase [Cellulomonas flavigena DSM 20109]
 gi|296021955|gb|ADG75191.1| methyltransferase [Cellulomonas flavigena DSM 20109]
          Length = 192

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+LY G+G   L   +R   RV+ VE A+ +V+  R N  +  + +   V     + 
Sbjct: 45  ARVLDLYAGSGALGLEAASRGARRVVLVETARGAVDVCRRNARSLGLADRVEVVADRVDR 104

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             A     +          +  F  + +DPP
Sbjct: 105 YLARVAPTDGP-------AAESFDLVLLDPP 128


>gi|13472006|ref|NP_103573.1| hypothetical protein mll2162 [Mesorhizobium loti MAFF303099]
 gi|14022751|dbj|BAB49359.1| mll2162 [Mesorhizobium loti MAFF303099]
          Length = 198

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 1/116 (0%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +L+         L+L CG+G F+  LA+    RV A+++    + AA+  +    V+ +K
Sbjct: 27  LLSLGVEPGMTALDLCCGDGYFTAPLAKIVSGRVYALDLDPEMIVAAKAEVKQLGVSVLK 86

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            +   + E  + +  + +F  + +          +     R+        +V  + 
Sbjct: 87  WIVADASEVAELIPEKIDFALIANTFHGVPDQPALVKAVARTLKPRGLFALVNWHR 142


>gi|118581410|ref|YP_902660.1| HemK family modification methylase [Pelobacter propionicus DSM
           2379]
 gi|118504120|gb|ABL00603.1| [protein release factor]-glutamine N5-methyltransferase [Pelobacter
           propionicus DSM 2379]
          Length = 288

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 21/108 (19%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              ++E  L     +   +L++  G+G  ++ LAR     R++A +I+  ++E AR N  
Sbjct: 103 TETLVEEALRR-APLARTVLDIGTGSGCIAVSLARRLPGARIVASDISAVALEMARANAR 161

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           AN V+ V+ +  S  E                  +    F  I  +PP
Sbjct: 162 ANGVD-VEFLHGSLLE-----------------PVAGRCFDLIVSNPP 191


>gi|325283595|ref|YP_004256136.1| methyltransferase small [Deinococcus proteolyticus MRP]
 gi|324315404|gb|ADY26519.1| methyltransferase small [Deinococcus proteolyticus MRP]
          Length = 387

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 22/109 (20%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+L CG G      A+    V  V+    SV +AR  +AAN ++  + +          
Sbjct: 251 VLDLGCGTGLIGAWAAQRGAAVTLVDGDLQSVRSARLTLAANGLSG-EAIHSDV------ 303

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGMVQAYPH 317
                      D D+   RF  +  +PP    R  + D     + A   
Sbjct: 304 -----------DADLGERRFDMVLTNPPFHVGRGVVLDVAREFIAAARR 341


>gi|308186586|ref|YP_003930717.1| possible protoporphyrinogen oxidase [Pantoea vagans C9-1]
 gi|308057096|gb|ADO09268.1| possible protoporphyrinogen oxidase [Pantoea vagans C9-1]
          Length = 277

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 23/163 (14%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     + ++T +S   ++      L D    +      D+L AR+ + + +       +
Sbjct: 22  RDAEILLGFVTGKSRSWLIAFDETALSDAQLAQL-----DSLLARRARGEPVAH-----L 71

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
             +R++    L V+  TLI R                ++E  LA        +L++  G 
Sbjct: 72  VGEREFWSLPLRVSDATLIPRPD-----------TELLVEQALAHLPATPSTILDMGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           G  +L LA  R   +V  V+  + +VE A  N    +++N   
Sbjct: 121 GAIALALASERPDCQVTGVDRIEAAVELAGSNAEQLNLSNTTF 163


>gi|225420025|ref|ZP_03762328.1| hypothetical protein CLOSTASPAR_06368 [Clostridium asparagiforme
           DSM 15981]
 gi|225041281|gb|EEG51527.1| hypothetical protein CLOSTASPAR_06368 [Clostridium asparagiforme
           DSM 15981]
          Length = 502

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 7/116 (6%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL--VL 227
            L     T     I  S    NA +   +              +L+ +CG G   +    
Sbjct: 317 TLKDMRFTYRRDVIPTSIRPVNAALTAAL----AREYMKEDAQVLDPFCGVGTMLIERHK 372

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           A   +    ++I + ++  AR N  A     +  V     +FT   R +     + 
Sbjct: 373 AVRANTSYGIDILEEAILKARENAEAAK-QVIHFVNRDFFQFTHDYRFDEVITDMP 427


>gi|220912236|ref|YP_002487545.1| methyltransferase small [Arthrobacter chlorophenolicus A6]
 gi|219859114|gb|ACL39456.1| methyltransferase small [Arthrobacter chlorophenolicus A6]
          Length = 207

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 22/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
               G+LL++ CG G  +L +A      +V AV++ +  +     N AA  ++NV     
Sbjct: 57  PAATGNLLDIGCGWGPIALTMALKAPHAQVYAVDVNERCIALTNGNAAALGLSNVAASTP 116

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
            + +                    + +F TI+ +PP R G D+    +    P + 
Sbjct: 117 DAVD-------------------PAVQFDTIWSNPPIRIGKDELHSLLKLWLPRLA 153


>gi|218295159|ref|ZP_03495995.1| methyltransferase small [Thermus aquaticus Y51MC23]
 gi|218244362|gb|EED10887.1| methyltransferase small [Thermus aquaticus Y51MC23]
          Length = 374

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 18/104 (17%)

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +LE ++ A   ++G  +L+L  G G  +L LAR    V AVE    SV + R ++  N +
Sbjct: 219 LLEALVTAVPSLKGRRVLDLGAGYGALTLPLARLGAEVTAVEDDLVSVLSLRRSLEENGL 278

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                 R    +  +A+  E              RF  I  +PP
Sbjct: 279 E----ARALHSDVDEALTPEE-------------RFDIIVTNPP 305


>gi|312194935|ref|YP_004014996.1| methyltransferase [Frankia sp. EuI1c]
 gi|311226271|gb|ADP79126.1| methyltransferase [Frankia sp. EuI1c]
          Length = 185

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             + +LY G+G   L  L+R     L VE    + +  R N A   +   +IV  + +  
Sbjct: 46  ARVADLYAGSGAVGLEALSRGAAHALLVERDPKAAQVVRRNAAELGLAGAEIVVGAVERV 105

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
             A                   +  +F+DPP +
Sbjct: 106 VDA--------------TPGQAYDVVFLDPPYA 124


>gi|328773183|gb|EGF83220.1| hypothetical protein BATDEDRAFT_21725 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 304

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 49/131 (37%), Gaps = 3/131 (2%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            +   ++   +A        +++ +CG G  ++  A   D+V+A++I    +E AR+N A
Sbjct: 122 SVTPELIAQHIAQRSAGCKVMVDGFCGVGGNAIQFAMTCDKVIAIDIDPVRLECARHNAA 181

Query: 253 ANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI--FVDPPRSGLDDATV 309
              V + ++ +     E    ++ +  F           +          P +G     +
Sbjct: 182 VYGVQDKIEFICGDFMELAPTIKADGVFMSPPWGGPQYIQADVFDLETMMPMNGTHLFNL 241

Query: 310 GMVQAYPHILY 320
                  +I+Y
Sbjct: 242 VKSNITSNIIY 252


>gi|296333103|ref|ZP_06875557.1| ribosomal RNA methyltransferase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672805|ref|YP_003864476.1| ribosomal RNA methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149719|gb|EFG90614.1| ribosomal RNA methyltransferase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411048|gb|ADM36166.1| ribosomal RNA methyltransferase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 201

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             ++G +L++ CG G   L LA  F    +  +++ + +VE +  N   N + NVKI + 
Sbjct: 56  PEVEGSILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQNGITNVKIYQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYR 291
               F+     +   + L +  I + +
Sbjct: 116 DM--FSNVDSAQTFASILTNPPIRAGK 140


>gi|229094823|ref|ZP_04225828.1| hypothetical protein bcere0020_890 [Bacillus cereus Rock3-29]
 gi|229113777|ref|ZP_04243212.1| hypothetical protein bcere0017_900 [Bacillus cereus Rock1-3]
 gi|228669648|gb|EEL25055.1| hypothetical protein bcere0017_900 [Bacillus cereus Rock1-3]
 gi|228688566|gb|EEL42439.1| hypothetical protein bcere0020_890 [Bacillus cereus Rock3-29]
          Length = 213

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               ++G++L++ CG G   L LA+ F    +  V++ + ++  A+ N A N + NV+I+
Sbjct: 68  QMPDVKGNVLDVGCGYGPIGLSLAKEFQDREIHMVDVNERALGLAKENAANNKIENVRIL 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 128 QSSVYENVDG------------------KYAVILSNPPIRAGKDIVHEILEKAVEYLV 167


>gi|254167033|ref|ZP_04873886.1| hypothetical protein ABOONEI_441 [Aciduliprofundum boonei T469]
 gi|197623889|gb|EDY36451.1| hypothetical protein ABOONEI_441 [Aciduliprofundum boonei T469]
          Length = 374

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 27/153 (17%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE--- 268
            + ++ CG G  ++  AR   RVL V+I K  +E A+ N     + N++ +         
Sbjct: 82  TIADISCGVGMQAIFFARTNRRVLCVDIDKRRIEYAKRNAKTYGIKNMQFICGDCCSNEI 141

Query: 269 ----------FTQAMRREREFNR-----LK---DIDIHSYRFKTIFVDPPRSGLDDATVG 310
                     F+   RRE E  R     L     I     +   IF  PP+   D     
Sbjct: 142 YNIAKRYDIIFSDPARREEEKERDLRNLLPSPLKIIEKYGKRDYIFDLPPQISQDKIPKD 201

Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIER 343
             +      YIS N  S+ R  + L + + ++R
Sbjct: 202 WEKE-----YISLN-GSIRRLTAYLGSLYRVDR 228


>gi|254383123|ref|ZP_04998477.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194342022|gb|EDX22988.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 413

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFTQ 271
           + +L CG G  +L LAR   RVLAV+    +V  AR N  A  + ++  VR     E   
Sbjct: 101 VADLCCGIGGDALALARLGIRVLAVDRDPLTVAVARANAEALGLADLIEVREADVTEVDT 160

Query: 272 A------MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +      +   R   R +  D   Y     +          A + +    PH
Sbjct: 161 SAYDAVFIDPARRGGRGRVFDPEGYSPPLSWAVRAALTARHAAIKIAPGIPH 212


>gi|156936955|ref|YP_001434751.1| methyltransferase small [Ignicoccus hospitalis KIN4/I]
 gi|156565939|gb|ABU81344.1| methyltransferase small [Ignicoccus hospitalis KIN4/I]
          Length = 194

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 17/117 (14%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
                   +G +L++ CG G   +++A+      V  V++   +V+AA+ N   N V  V
Sbjct: 47  AEFMEIPKEGKVLDVGCGYGVLGILMAKLNPNLEVYMVDVNPVAVDAAKRNAELNGVR-V 105

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            +++ +       +    +   +KD       F TI  +PP +   +    +++  P
Sbjct: 106 TVLQGN-------LYEPTDLLGIKD-------FSTIVSNPPLAAGKEVVKEIIEGAP 148


>gi|254519875|ref|ZP_05131931.1| ribosomal protein L11 methyltransferase [Clostridium sp. 7_2_43FAA]
 gi|226913624|gb|EEH98825.1| ribosomal protein L11 methyltransferase [Clostridium sp. 7_2_43FAA]
          Length = 313

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 64/181 (35%), Gaps = 3/181 (1%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
            ID +    ++ +  L    +     +  + ++ +   A  ++          KI +   
Sbjct: 76  NIDEILKYINEKMNELKELGIDTGVAKVESEKMFEEDWANNWKKYYKPTKVGEKIVV--K 133

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
            + E     G  L+                  M    L         + ++ CG+G  ++
Sbjct: 134 PIWEEYDAQGEELVVELDPGMAFGTGTHETTRMCIQSLEKYVKEDSTVFDVGCGSGILAI 193

Query: 226 VLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
             A+   +  + V++   +VE+A+ N+  N++ N++I+  +  E           N + +
Sbjct: 194 AAAKLGSKMAVGVDLDPVAVESAKENVGYNNLENIQILYGNLVEVIDGKADIVVANIIAE 253

Query: 285 I 285
           +
Sbjct: 254 V 254


>gi|255088005|ref|XP_002505925.1| methyltransferase [Micromonas sp. RCC299]
 gi|226521196|gb|ACO67183.1| methyltransferase [Micromonas sp. RCC299]
          Length = 386

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 61/169 (36%), Gaps = 37/169 (21%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN---------HVNNVKIVR 263
           +L+L CG G  +L  ++    V A ++   +V     N   N         +++  + +R
Sbjct: 199 VLDLCCGVGPIALPASKKCLAVYANDLNPAAVAYLGRNAKRNKGTSLAGVTNLDAGECLR 258

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH------ 317
           +   EF  A  +++  +   + D+   RF  + ++ P  G        V A+        
Sbjct: 259 VRIAEFAAA--KKKGGSNFDERDLAKMRFTRVVMNLP-QGSLTLLPCFVGAFDRETWPPE 315

Query: 318 ---ILYI-----SCNPDS-----------LCRDLSILSTTHTIERLALF 347
              I++      S +P+S           L  D + L       R+ L 
Sbjct: 316 FLPIVHAYAFSKSDDPESDAGARAAKELGLEEDAAALGDGVGYRRVRLV 364


>gi|237799728|ref|ZP_04588189.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022583|gb|EGI02640.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 277

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFASAQVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              H++N +   + S  F+                +   +F  I  +PP
Sbjct: 154 KRLHLDNAE--VLDSNWFSA---------------LQGRQFDLIISNPP 185


>gi|329121319|ref|ZP_08249945.1| methyltransferase [Dialister micraerophilus DSM 19965]
 gi|327469728|gb|EGF15194.1| methyltransferase [Dialister micraerophilus DSM 19965]
          Length = 404

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 13/120 (10%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            A       ++L+ +   G F+L  A+     V A++I++ +V+ A ++   N + N+K+
Sbjct: 223 AAGNIAKGKNVLDCFTHTGAFALNAAKSGAKSVTAIDISQHAVDMATHHAEINELENMKV 282

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHILY 320
           ++    ++     +  E           +++  I +DPP      +TV    + Y  I Y
Sbjct: 283 LKADVFDYLTQQDKNHE-----------HKYDYIILDPPAFTKSGSTVHSAFRGYKEINY 331


>gi|167772467|ref|ZP_02444520.1| hypothetical protein ANACOL_03845 [Anaerotruncus colihominis DSM
           17241]
 gi|167665570|gb|EDS09700.1| hypothetical protein ANACOL_03845 [Anaerotruncus colihominis DSM
           17241]
          Length = 404

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 62/188 (32%), Gaps = 23/188 (12%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ-IENS---- 186
            +   R+R         I+ +    + +     D    +  +    + Y    EN     
Sbjct: 153 EQDGQRIRGVYERNDVPIRELEGLTQGRGWFGSDSGGTKTQIVENGITYEVDFENGQKTG 212

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVE 245
           F                 A       +L+ +   G+F+L  A      V AV++++ +V 
Sbjct: 213 FF------LDQKYNRRAVARLAKGRRVLDCFTHTGSFALNAAHGGAAYVRAVDVSETAVT 266

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N   N ++ V              +    F+ L +++    RF  I +DPP     
Sbjct: 267 LARDNAVRNGLDGVI-----------ECQAANVFDLLPELEAAGERFDFIILDPPAFTKS 315

Query: 306 DATVGMVQ 313
             TVG  Q
Sbjct: 316 RRTVGGAQ 323


>gi|158317108|ref|YP_001509616.1| methyltransferase type 11 [Frankia sp. EAN1pec]
 gi|158112513|gb|ABW14710.1| Methyltransferase type 11 [Frankia sp. EAN1pec]
          Length = 268

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 11/119 (9%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            A      G LL++ CG G+ +L++A  F+  + ++     +  AR        +NV  V
Sbjct: 65  AALGHAPVGRLLDVGCGPGSLTLLVAGLFEAAVGLDPDPDMISYARAAAQRAGTDNVTWV 124

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           RM +++    +   R  +  +                 R  +  A   M+      +++
Sbjct: 125 RMRAEDLPGGLGVFRVVSFAQSFHWLG-----------RPRVAAAVHPMLAPDGRCVFV 172


>gi|15791245|ref|NP_281069.1| hypothetical protein VNG2475C [Halobacterium sp. NRC-1]
 gi|169237001|ref|YP_001690201.1| hypothetical protein OE4468F [Halobacterium salinarum R1]
 gi|10581873|gb|AAG20549.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167728067|emb|CAP14855.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 346

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSS 266
           G    +L+++ G G F+L +AR    V AVE    +      N   N     +  +    
Sbjct: 185 GPGERVLDMFAGVGYFALPMARAGATVTAVEKNPTAFRFLAENAQLNDVAETLDTILGDC 244

Query: 267 KEF 269
           +E 
Sbjct: 245 REV 247


>gi|226366125|ref|YP_002783908.1| methyltransferase [Rhodococcus opacus B4]
 gi|226244615|dbj|BAH54963.1| putative methyltransferase [Rhodococcus opacus B4]
          Length = 223

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 19/106 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + E + A   G    +L+L CG G  S+   A     V AV++++ +  +   N   N  
Sbjct: 18  LAEVLAARDLGPGTRVLDLCCGTGALSVEACAAGAGWVTAVDVSRRAAISTWLNATLNR- 76

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
             +++VR    +  + +R                 F  +  +PP +
Sbjct: 77  RTIRVVRGDLVDAVRTLR-----------------FDVVVANPPYA 105


>gi|41406223|ref|NP_959059.1| hypothetical protein MAP0125c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394571|gb|AAS02442.1| hypothetical protein MAP_0125c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 231

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L       GD+L+  CG    SL LA      + ++ +  +++ AR   A   + +   
Sbjct: 41  ALIEAGKFHGDVLDAGCGEAAVSLYLAERGFTTVGLDQSPTAIKLAREKAARRGLTSASF 100

Query: 262 VRMSSKEFT 270
                 +FT
Sbjct: 101 EVADISDFT 109


>gi|168053585|ref|XP_001779216.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669391|gb|EDQ55979.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 320

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 210 QGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             ++L+L  GNG     LA+  F  +   + ++ ++E AR   A N+V+N+  V     +
Sbjct: 139 SWNVLDLGTGNGLLLHALAKQGFTDLTGTDYSEGAIELARAISARNNVDNITFVVDDVLD 198

Query: 269 --FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
               Q  +   +   L  I +H            R     A   ++     ++  SCN
Sbjct: 199 TRINQLFKLVTDKGTLDAIGLHPDGPSR------RVQYWKALTKLLAPGGILVITSCN 250


>gi|325956773|ref|YP_004292185.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus
           acidophilus 30SC]
 gi|325333338|gb|ADZ07246.1| 23S rRNA (uracil-5-)-methyltransferase RumA2 [Lactobacillus
           acidophilus 30SC]
          Length = 88

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 293 KTIFVDPPRSGLDDATVGM-VQAYPH-ILYISCNPDSLCRDLSILSTT-HTIERLALFDQ 349
             I    P+ GL    +   V+  P   +Y+S NPD+L  DL +     +  + +   D 
Sbjct: 12  SVIIETAPKKGLLKGFIEASVKMQPREFIYLSFNPDTLVCDLKLFKQNCYETKAITPIDV 71

Query: 350 FPYTRHMECGVLLVRKP 366
            P T  M C   L ++ 
Sbjct: 72  APQTPDMMCICRLDKEN 88


>gi|322825679|gb|EFZ30569.1| proliferator-activated receptor-interacting protein interacting
           protein, putative [Trypanosoma cruzi]
          Length = 250

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 17/92 (18%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQ 271
           +L+L+CG G  ++ LAR +++V+AV+I   ++EAA+ N+    V + V            
Sbjct: 64  VLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCD------ 117

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  F  LK   + +  F  +   PP  G
Sbjct: 118 -------FRTLK---LDNMEFDAVHCSPPWGG 139


>gi|303290222|ref|XP_003064398.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453996|gb|EEH51303.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 384

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 212 DLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
            ++++ C  G F++  A      V  V+ ++P+++ A  N + N V + ++ V+  + + 
Sbjct: 208 KVMDVCCYTGGFAVNAALGGASDVTGVDSSRPALDVAAKNASLNGVTDRIRWVKNDAFKH 267

Query: 270 TQAMRREREFN-----RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
             A     E        L    +           P   G++   + +++    ++  SC
Sbjct: 268 LDACLENGEAGTYDLIVLDPPKLAPNVKSVARAVPKYVGMNQRAMKLLRPGGILVTCSC 326


>gi|171911114|ref|ZP_02926584.1| hypothetical protein VspiD_08060 [Verrucomicrobium spinosum DSM
           4136]
          Length = 412

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 31/129 (24%)

Query: 212 DLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ C +G FS+  A+      V+ V++ + +VE AR N   N    +  V   +  +
Sbjct: 242 RVLDVCCYSGGFSVA-AKLGGAAEVIGVDLDEKAVEQARKNANLNQ-QRIDFVHADAFTY 299

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSG----------LDDATVGMVQA 314
            + M+R            +   +  + +DPP     R G          L+   + +V  
Sbjct: 300 MRQMQR------------NGATWDAVVLDPPKLVHSREGFEEGKARYHDLNKLALSLVAR 347

Query: 315 YPHILYISC 323
               +  SC
Sbjct: 348 GGLFVTCSC 356


>gi|14517939|gb|AAK64442.1|AF377339_3 protoporphyrinogen oxidase HemK [Myxococcus xanthus]
          Length = 293

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 32/173 (18%)

Query: 139 RDALHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           +D L A +  I+       T+     R++ +    V  R LI R                
Sbjct: 56  KDELGAYRALIERRMAGEPTQYLTGVREFYNRPFKVDARVLIPRPE-----------TEL 104

Query: 198 MLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAAN 254
           ++E  L    K   G  L+L  G+G  ++ LA  R    V+A +++  +   AR N  A 
Sbjct: 105 LVEAALRMLPKDAPGRALDLCTGSGCIAISLAAERPQATVIATDLSPDACALARENAQAL 164

Query: 255 H-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              + V +++     FT     ER              F+ +  +PP     +
Sbjct: 165 GVADRVTVLQGDL--FTPVPAGER--------------FQVVVSNPPYIASGE 201


>gi|108762567|ref|YP_630205.1| ArsR family transcriptional regulator [Myxococcus xanthus DK 1622]
 gi|108466447|gb|ABF91632.1| transcriptional regulator, ArsR family [Myxococcus xanthus DK 1622]
          Length = 298

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 9/133 (6%)

Query: 193 GINVHMLE-------WVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +N  +LE       W  A    +   ++ +  CG G  S+ +AR   RV A++    ++
Sbjct: 110 ALNERLLEPGQSWFLWAGALASLLPPLEVADFGCGTGVLSVAIARWARRVWAIDQNADAL 169

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E AR       + N++ +R      + A     +   +     H    +++  +  R   
Sbjct: 170 EQARERAGREGLENIRFLREDLHRLSLA-SGSLDLVVISQSLHHVEEPQSVLSESARLLK 228

Query: 305 DDATVGMVQAYPH 317
               + +++  PH
Sbjct: 229 PGGRLVLLELMPH 241


>gi|103487624|ref|YP_617185.1| 3-demethylubiquinone-9 3-methyltransferase [Sphingopyxis alaskensis
           RB2256]
 gi|98977701|gb|ABF53852.1| 3-demethylubiquinone-9 3-methyltransferase [Sphingopyxis alaskensis
           RB2256]
          Length = 272

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 7/132 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                      +L++ CG G     LAR   +V+ ++ A  ++ AA+ + A   +  +  
Sbjct: 54  ARERHPLAGKHVLDVGCGAGLLCEPLARMGAKVIGIDAAPENIAAAKDHAAGQGLA-ISY 112

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
                 +             L   D+               G       +V +   I ++
Sbjct: 113 FAGELADLPNPFVSSEVETLLGSADLRGVSTSLDTN-----GEGKGQFDLVTSMEVIEHV 167

Query: 322 SCNPDSLCRDLS 333
             +P     +L+
Sbjct: 168 V-DPAVFVAELA 178


>gi|71030202|ref|XP_764743.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351699|gb|EAN32460.1| hypothetical protein TP02_0179 [Theileria parva]
          Length = 1303

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 96/291 (32%), Gaps = 31/291 (10%)

Query: 50   HIWHDGDDLYHIMF-DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQID 108
             I  +  D    MF D++ +  +R       +LLI  +       I  E + +       
Sbjct: 924  RIKQNPRDKLLAMFKDKELETIVRNVEVFGDNLLITPVRGLDFPEIDWESVSKEFKVSSV 983

Query: 109  YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK---TKICLDRD 165
             L  + +        HR ++  +      +R+      + I+    +      +I + + 
Sbjct: 984  ALVGEIEGE----ERHRQVELLYGNGDASIRENGVTYIFNIKTNMFSKGNSSERIRIQKM 1039

Query: 166  YV-DERLTVAGRTLIY--RQIENSFTQPNAG----INVHMLEWVLAATKGIQGDL-LELY 217
            Y  D R     R   +        F   N        +H  E    +   ++G++ ++ +
Sbjct: 1040 YFSDYRHHRRVREYKFSDELTPYYFLASNNYHPKLKPIHHYELKDLSKYQLEGEIMVDFF 1099

Query: 218  CGNGNFSLVL-----ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
            CG G F++ +      +   RVL V++ + +++    N  AN +                
Sbjct: 1100 CGIGYFTIPILKYTDEKRLSRVLCVDVNETAIKYLMENAKANKI--------DLSRIEVK 1151

Query: 273  MRREREFNRLKDIDIHSYRFKTIFVDPP--RSGLDDATVGMVQAYPHILYI 321
            +     F +    D      K +    P  R G   A   +   +  I+Y+
Sbjct: 1152 VGNCGMFGKSYGFDYVGEADKILLGLLPSSRVGWIPAIAAVNTMHGGIVYV 1202


>gi|282849338|ref|ZP_06258723.1| methyltransferase, FkbM family [Veillonella parvula ATCC 17745]
 gi|282581042|gb|EFB86440.1| methyltransferase, FkbM family [Veillonella parvula ATCC 17745]
          Length = 276

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 39/82 (47%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +   L++       +L++  G G+F++  A+H   V A+E +K  V   + N    +V N
Sbjct: 57  VYAALSSVLNPDSTMLDIGAGPGSFTIPFAQHIQSVTAIEPSKGMVAVLKENAKELNVEN 116

Query: 259 VKIVRMSSKEFTQAMRREREFN 280
           + I+    ++  Q    + +F+
Sbjct: 117 INIIEELVQDLPQDGSSDFKFD 138


>gi|301111690|ref|XP_002904924.1| trimethylguanosine synthase [Phytophthora infestans T30-4]
 gi|262095254|gb|EEY53306.1| trimethylguanosine synthase [Phytophthora infestans T30-4]
          Length = 336

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           S+      +    +   LA        +++ + G G   + LA    +V+A++I    + 
Sbjct: 146 SWYSVTPQVIAEHIAKRLACDV-----VVDPFSGCGGNVIQLAMTCKQVIAIDIDPEKIR 200

Query: 246 AARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF 279
            A++N A   V + ++ V  +S +    ++ +  F
Sbjct: 201 MAKHNAAIYGVADKIEFVVGNSIDILPNLKADAVF 235


>gi|254773164|ref|ZP_05214680.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 222

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L       GD+L+  CG    SL LA      + ++ +  +++ AR   A   + +   
Sbjct: 32  ALIEAGKFHGDVLDAGCGEAAVSLYLAERGFTTVGLDQSPTAIKLAREKAARRGLTSASF 91

Query: 262 VRMSSKEFT 270
                 +FT
Sbjct: 92  EVADISDFT 100


>gi|118465195|ref|YP_879415.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium avium 104]
 gi|118166482|gb|ABK67379.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium avium 104]
          Length = 231

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L       GD+L+  CG    SL LA      + ++ +  +++ AR   A   + +   
Sbjct: 41  ALIEAGKFHGDVLDAGCGEAAVSLYLAERGFTTVGLDQSPTAIKLAREKAARRGLTSASF 100

Query: 262 VRMSSKEFT 270
                 +FT
Sbjct: 101 EVADISDFT 109


>gi|116004541|ref|NP_001070632.1| tRNA wybutosine-synthesizing protein 2 homolog [Danio rerio]
 gi|123905829|sp|Q0P466|TYW2_DANRE RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|112419413|gb|AAI22255.1| Zgc:153361 [Danio rerio]
          Length = 408

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           E +  A+    G+ +++LY G G F+L   +  +   V A E    +V A + N+  N V
Sbjct: 207 EKLRIASFDCSGETVVDLYAGIGYFTLPYLVHANAAHVHACEWNPDAVAALQRNLEINGV 266

Query: 257 NN-VKIVRMSSKEFTQAMRRER 277
           +N   + +  +++ + +   +R
Sbjct: 267 SNRCTVHQGDNRQLSLSDLADR 288


>gi|19074139|ref|NP_584745.1| similarity to HYPOTHETICAL PROTEINS Y883_METJA [Encephalitozoon
           cuniculi GB-M1]
 gi|19068781|emb|CAD25249.1| similarity to HYPOTHETICAL PROTEINS Y883_METJA [Encephalitozoon
           cuniculi GB-M1]
          Length = 360

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 78/211 (36%), Gaps = 25/211 (11%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD 140
           + IN  +           +LR  L   + + + S   IV  I H  LD    +    +  
Sbjct: 77  VPINVELELCYEYFTYSEVLRRILP--EEVQTPSSFEIVGSIVHLNLDGEQMKHKNIIGR 134

Query: 141 ALHARKYQIQLIGRANKTKI-------CLDRDYVDERLTVAGRTLI---YR-QIENSFTQ 189
            +H +  +  +      +          +  D V E +   G  L    YR     S  Q
Sbjct: 135 VVHDKTGKTVITKIGQISNAYRSFDLEVIGGDPVLETIHREGDILFCIDYRSVYWCSKLQ 194

Query: 190 PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
                     E  + A K   G++L + +CG G  SL   +   RV + ++   ++E   
Sbjct: 195 S---------ERAILAGKFKAGEVLCDPFCGVGPVSLPALKKGCRVYSNDLNLRAIECLE 245

Query: 249 YNIAANHVN--NVKIVRMSSKEFTQAMRRER 277
            +I  N ++  N++I  +S+ EF + M   +
Sbjct: 246 KSIKINRLDPRNIEIFNLSANEFLEKMAGRK 276


>gi|296101960|ref|YP_003612106.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056419|gb|ADF61157.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 276

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV++   +V  A+ N+    
Sbjct: 98  LVEQALARLPAAASRILDLGTGTGAIALALATERPDCAVTAVDVMPDAVALAQRNVERLG 157

Query: 256 VNNVKIVR 263
           V NV +++
Sbjct: 158 VTNVTVLQ 165


>gi|124486470|ref|YP_001031086.1| methyltransferase [Methanocorpusculum labreanum Z]
 gi|124364011|gb|ABN07819.1| methyltransferase [Methanocorpusculum labreanum Z]
          Length = 308

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 92/250 (36%), Gaps = 17/250 (6%)

Query: 46  RAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLF 105
                +    +    ++ + +    +R  Y   G LL+  L    +        +R +L 
Sbjct: 9   CVRIPVREGEEGRRKLIAEGKADRSLR-PYVEDGHLLVPVLEETSLQAEFSTTGIREELP 67

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK---ICL 162
           + + +       IV L   +  D A  E  +  R + H   +    +    +TK   +  
Sbjct: 68  RHEQIGG-----IVVL---QEEDIAGAEKILAARPSAHTALFATSPVEGEFRTKTFRVLA 119

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
             +  +      G  +I       F    +    +  + +L++ K  +  +L+++ G G 
Sbjct: 120 GENTTETMYHEYGHRMIIDLTAAYF----SARLSNERQRILSSMKEGE-RILDMFAGVGP 174

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           F ++L      V+A +I   +V   + NI  NH++NV  +   +    + +   +    +
Sbjct: 175 FPVMLGGKAKLVVANDINPSAVYLLQKNIRLNHLHNVVPILGDAMNLPEMLDSLKFDRII 234

Query: 283 KDIDIHSYRF 292
            ++   +Y F
Sbjct: 235 MNLPFAAYGF 244


>gi|326794005|ref|YP_004311825.1| hypothetical protein Marme_0706 [Marinomonas mediterranea MMB-1]
 gi|326544769|gb|ADZ89989.1| hypothetical protein Marme_0706 [Marinomonas mediterranea MMB-1]
          Length = 401

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 82/252 (32%), Gaps = 26/252 (10%)

Query: 73  IDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           +D  +  S L++ L I +    +    P  R      D L+         ++  ++    
Sbjct: 75  VDTVLNKSTLVHRLKIALSLRESSYNTPYYRLVFGDADGLSGLVVDRFADILVVQISTAG 134

Query: 131 WRECAIRLRDALH-ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
                  + +AL    K    L+    K +     D   E +      ++Y Q  ++  Q
Sbjct: 135 MERVKSEIIEALQDVVKPVAILMKNDGKMRNIEGLDTYVEEVVGTVPEVVYLQENDTLFQ 194

Query: 190 PNAGINVHMLEWVLAATKGIQ--------GDLLELYCGNGNFSL-VLARHFDRVLAVEIA 240
                      W     +  +          +L+++   G + +   A     V  ++ +
Sbjct: 195 APVWDGQK-TGWFYDHRENRKTMQQYCAGKRVLDVFSYVGGWGVQAAAAGATDVTFIDAS 253

Query: 241 KPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            P+++    N+A N    N  ++   + E  Q++  ++E            RF  + +DP
Sbjct: 254 APALDHVEANLALNQFEGNSDLMNGDAFEAMQSLIEDKE------------RFDVVVMDP 301

Query: 300 PRSGLDDATVGM 311
           P        +  
Sbjct: 302 PAFIARRKDIKA 313


>gi|71665723|ref|XP_819828.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70885147|gb|EAN97977.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 420

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 18/126 (14%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
            +  +  H+          +   +L++ CG G   + +A H     V+AV++ + +V+ +
Sbjct: 191 THWFVQRHLSRATADEKSPL--RVLDMCCGTGCVGIAIAVHLPHTEVVAVDVMEEAVKVS 248

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRRER-------------EFNRLKDIDIHSYRFKT 294
             N   N + +V   R    +  +A                  E  + +  D+H   F  
Sbjct: 249 EENARRNGI-HVSRYRAIKSDMFEAFVELDDTSSSGKNKEGISENKKTQIADLHVGSFDI 307

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 308 IVSNPP 313


>gi|323140978|ref|ZP_08075888.1| putative 23S rRNA m5C1962 methyltransferase [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414515|gb|EFY05324.1| putative 23S rRNA m5C1962 methyltransferase [Phascolarctobacterium
           sp. YIT 12067]
          Length = 407

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIEN---SFTQPNAGINVHMLEWVLAATKGIQGDLL 214
           T +C +   V   +   G              F                 A       +L
Sbjct: 183 TDLCPEPGAVTTEIVENGIEYTVDVENGQKTGFF------LDQKYNRQAIAKIAKGKHVL 236

Query: 215 ELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEFTQA 272
           + +   G+F+L  A+     V AV+I+  +V+ A +N A N+ ++V   ++ +  +    
Sbjct: 237 DCFTHTGSFALNAAKGGAASVTAVDISAEAVQMAEHNAAINNCSDVMHGLQANVFDLLSD 296

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
           +            + HS  +  I +DPP      +TV   ++ Y  I
Sbjct: 297 L-----------FNKHSREYDFIILDPPAFTKSGSTVKNAIRGYKEI 332


>gi|145343256|ref|XP_001416301.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576526|gb|ABO94594.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 306

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEIAK 241
             F Q        M +W   +       +L++ CG G  S  LA+ F +   V  + ++ 
Sbjct: 63  KDFIQAKFDFVDEMADW---SEADKPAKVLDVGCGIGGTSRHLAKRFGQGTSVTGITLSP 119

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             V+ A    A   V N K   M++     AM  E +   L                P +
Sbjct: 120 NQVKRATELAAEQGVPNAKFQVMNA----LAMEFEDDTFDLVWACESGEH------MPDK 169

Query: 302 SGLDDATVGMVQAYPHIL 319
               +  V +++    I+
Sbjct: 170 KKYVEEMVRVLKPGGKIV 187


>gi|126729900|ref|ZP_01745713.1| hypothetical protein SSE37_05480 [Sagittula stellata E-37]
 gi|126710019|gb|EBA09072.1| hypothetical protein SSE37_05480 [Sagittula stellata E-37]
          Length = 406

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 13/120 (10%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             AA       +++++   G F L  LA     VL V+ + P+++ AR    A  V +  
Sbjct: 225 AFAAKLSADASVIDVFSHVGGFGLAALAGGAREVLCVDGSAPALDLARAGADAMGVADRF 284

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
                      A R+   F+ L  +     R+  +  DPP        +   ++AY  I 
Sbjct: 285 -----------ATRQGDAFDTLTALQEDDARYDVVVCDPPAFAPSKQALDKGLRAYERIA 333


>gi|94500022|ref|ZP_01306557.1| modification methylase, HemK family protein [Oceanobacter sp.
           RED65]
 gi|94427880|gb|EAT12855.1| modification methylase, HemK family protein [Oceanobacter sp.
           RED65]
          Length = 281

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 15/134 (11%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I     + D  + V+  TLI R           G    ++++++        ++L+L  G
Sbjct: 74  IIGQTGFWDLTIKVSPATLIPR-----------GDTESLMDYIVEHFNP--KNVLDLGTG 120

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L  A+ +    V+AV++ + +V  A+ N   N V NV+I++          R + 
Sbjct: 121 TGALALATAKEYPQASVVAVDVIEEAVALAKENAKLNKVTNVEILQSDWFALVPKRRFDL 180

Query: 278 EFNRLKDIDIHSYR 291
             +    ID + + 
Sbjct: 181 IVSNPPYIDANDHH 194


>gi|20804044|emb|CAD31621.1| HYPOTHETICAL PROTEIN [Mesorhizobium loti R7A]
          Length = 226

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 201 WVLAATKGIQGD-LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           W       ++G  +LE+ CG G   L LA+     ++A +I   +V  A  N A N + N
Sbjct: 47  WYTDNFPPVEGKSILEIGCGFGLPGLYLAKLGAASLVACDIDPKAVANALENAARNGIKN 106

Query: 259 VKIVRMS 265
           V+++   
Sbjct: 107 VEVIESD 113


>gi|18978023|ref|NP_579380.1| hypothetical protein PF1651 [Pyrococcus furiosus DSM 3638]
 gi|18893806|gb|AAL81775.1| hypothetical protein PF1651 [Pyrococcus furiosus DSM 3638]
          Length = 195

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 17/109 (15%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               + +L CG G   +V +R  + V+  +I + +V  AR N+  N+V N ++   +  E
Sbjct: 56  PNWRVFDLGCGYGPIGIVASRFVEYVVMSDINRRAVSIARKNLKINNVTNAEVRWGNLYE 115

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                             +   +F +I  +PP     +    +V   P 
Sbjct: 116 -----------------PVKGEKFHSIITNPPIHAGKEILREIVINAPK 147


>gi|320354564|ref|YP_004195903.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Desulfobulbus propionicus DSM 2032]
 gi|320123066|gb|ADW18612.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Desulfobulbus propionicus DSM 2032]
          Length = 286

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 20/130 (15%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIA 252
              MLE VL    G      L++  G+G  ++VLAR   R V+AV+I++ ++  A  N+ 
Sbjct: 97  TEFMLEQVLTTCAGTTVERALDMCTGSGAIAVVLARELGRPVIAVDISEAALAVAADNVR 156

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATV 309
            + V N+  V +   +   A+   R F               I  +PP    + +D    
Sbjct: 157 CHGVANL--VTLLCGDLFAALNPARTF-------------DLIVSNPPYIAEAVIDQLEP 201

Query: 310 GMVQAYPHIL 319
            + QA P + 
Sbjct: 202 EVAQAEPRLA 211


>gi|268317049|ref|YP_003290768.1| hypothetical protein Rmar_1493 [Rhodothermus marinus DSM 4252]
 gi|262334583|gb|ACY48380.1| Protein of unknown function methylase putative [Rhodothermus
           marinus DSM 4252]
          Length = 400

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 16/118 (13%)

Query: 205 ATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKI 261
           A       +L+++  +G F L   AR    V  ++I++P+++ AR N   N ++   +  
Sbjct: 211 ARLARDRRVLDVFSADGGFGLMAAARGAAHVHLLDISEPAMQRARENARLNGLDLSRLTF 270

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
              ++             +RL ++      +  I +DPP             +AY  I
Sbjct: 271 DVANA------------LDRLGELVAQGATYDLIVLDPPAFAKSKRHLDDARRAYQRI 316


>gi|57640432|ref|YP_182910.1| Met-10+ like protein [Thermococcus kodakarensis KOD1]
 gi|57158756|dbj|BAD84686.1| Met-10+ like protein [Thermococcus kodakarensis KOD1]
          Length = 331

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +++ G G +S++LA+    V A +I   +V     N   N   NV  +    ++    
Sbjct: 185 VFDMFAGVGPYSILLAKKAKLVFACDINPWAVRYLEENKKLNKTPNVIPILGDVRKVAGQ 244

Query: 273 MRREREFNRLKDI 285
           ++ +R    L   
Sbjct: 245 IKADRVIMNLPKF 257


>gi|327539611|gb|EGF26219.1| SAM-dependent methyltransferase [Rhodopirellula baltica WH47]
          Length = 453

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 14/124 (11%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANH 255
             L    AA+      +L++    G F+L  AR     V+AV+ ++ +++ A+ N   N 
Sbjct: 267 QQLNHAAAASYMADRRVLDICTYTGGFALAAARAGAKEVVAVDSSERALDIAKRNAERNQ 326

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQA 314
           + NV+  +               F+ LK+      +F  I +DPPR +G  + T   ++A
Sbjct: 327 LTNVRFDQGDC------------FDDLKERRERGEQFDAIILDPPRFAGSRNQTNAALRA 374

Query: 315 YPHI 318
           Y  +
Sbjct: 375 YTRL 378


>gi|288957175|ref|YP_003447516.1| SAM-dependent methyltransferase [Azospirillum sp. B510]
 gi|288909483|dbj|BAI70972.1| SAM-dependent methyltransferase [Azospirillum sp. B510]
          Length = 403

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 31/149 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A+    G  ++ +  NG F +  A     RV+AV+ +  ++E A     AN V + 
Sbjct: 220 RAFIASLARGGRAIDFFSYNGGFGIQCAVAGATRVIAVDRSALALENATRAAEANGVAD- 278

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--------GM 311
              R  +       R+   F  L+ ++     F+ +  DPP        +         M
Sbjct: 279 ---RFEA-------RKADAFQELERLNAAGETFQVVVADPPAFVKSKKDLAVGCRAYRKM 328

Query: 312 VQAYPHI-------LYISC----NPDSLC 329
            +    I       L  SC    +P +  
Sbjct: 329 ARLAARITAPGGYLLCGSCSHNVDPPTFA 357


>gi|37525988|ref|NP_929332.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36785418|emb|CAE14364.1| Protein methyltranferase HemK (Protein-glutamine
           N-methyltransferase) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 282

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L +A  R   RV  V+I   +V  A+ N     
Sbjct: 98  LVEKALERLSLTPCRILDLGTGTGAIALAIASERPDCRVTGVDINPDAVMLAQGNAEKLK 157

Query: 256 VNNVKI 261
           + NV  
Sbjct: 158 IQNVDF 163


>gi|32474248|ref|NP_867242.1| SAM-dependent methyltransferase [Rhodopirellula baltica SH 1]
 gi|32444786|emb|CAD74788.1| conserved hypothetical protein-putative SAM-dependent
           methyltransferases [Rhodopirellula baltica SH 1]
          Length = 453

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 14/124 (11%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANH 255
             L    AA+      +L++    G F+L  AR     V+AV+ ++ +++ A+ N   N 
Sbjct: 267 QQLNHAAAASYMADRRVLDICTYTGGFALAAARAGAKEVVAVDSSERALDIAKRNAERNQ 326

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQA 314
           + NV+  +               F+ LK+      +F  I +DPPR +G  + T   ++A
Sbjct: 327 LTNVRFDQGDC------------FDDLKERRERGEQFDAIILDPPRFAGSRNQTNAALRA 374

Query: 315 YPHI 318
           Y  +
Sbjct: 375 YTRL 378


>gi|262091715|gb|ACY25305.1| 16S RNA G1207 methylase RsmC [uncultured actinobacterium]
          Length = 225

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 21/115 (18%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            A      G+ L+L CG+G  ++ LA +    +V A+++   +++    N   N + N+ 
Sbjct: 77  AAPRPSTTGNFLDLGCGSGAIAMALASYSPEAKVWAIDVNARALQLVGENAQRNGLGNIT 136

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            +                F +    DI    F  I+ +PP      A   ++  +
Sbjct: 137 AL----------------FPQSVSPDIQ---FDLIWSNPPIRIGKQALHDLLDTW 172


>gi|109899040|ref|YP_662295.1| methyltransferase type 12 [Pseudoalteromonas atlantica T6c]
 gi|109701321|gb|ABG41241.1| Methyltransferase type 12 [Pseudoalteromonas atlantica T6c]
          Length = 422

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 201 WVLAATKGIQG-DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN 257
           W+           +L++ C  G+ +L LA HF    V+AV++A+PS+  A     +  ++
Sbjct: 192 WLKTQHPDFAPKRILDIGCTVGHNALPLAEHFPDAEVIAVDVARPSLRYAHARAKSLGLS 251

Query: 258 NVKIVRMSSKEFTQ 271
           N++ V+ ++++ +Q
Sbjct: 252 NIQFVQANAEDLSQ 265


>gi|323450126|gb|EGB06009.1| hypothetical protein AURANDRAFT_16878 [Aureococcus anophagefferens]
          Length = 101

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            +    +   +A   G    +++ +CG G  ++ LA     V+AV++    ++ AR+N A
Sbjct: 26  SVTPEKVAASIARRVGGGRVVIDAFCGCGGNAIALASEGAWVVAVDVDARKLDMARHNAA 85

Query: 253 ANH-VNNVKIVRMSS 266
                + +  V   +
Sbjct: 86  IYGVADRIDFVAADA 100


>gi|194334774|ref|YP_002016634.1| Mg-protoporphyrin IX methyl transferase [Prosthecochloris aestuarii
           DSM 271]
 gi|194312592|gb|ACF46987.1| magnesium protoporphyrin O-methyltransferase [Prosthecochloris
           aestuarii DSM 271]
          Length = 233

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q +A +      W+          +L+  CG G FS+ LA +  RV AV+IA   V  A+
Sbjct: 46  QGHAVMMDEAFAWIEKLNLPKGATILDAGCGTGLFSIRLAENGYRVKAVDIASQMVGKAK 105

Query: 249 YNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
            +  A  V N +     + +E          F+ L       +
Sbjct: 106 EDATAKGVANMIDFEVNTIEEVKGQYDAVVCFDVLIHYPAEGF 148


>gi|169832126|ref|YP_001718108.1| type 11 methyltransferase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638970|gb|ACA60476.1| Methyltransferase type 11 [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 261

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 8/115 (6%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVKI 261
           A   G    LL+  CG G  ++ LA  F  RVL V++   ++E AR + A   + + V+ 
Sbjct: 40  ALALGPGDFLLDAACGTGTSAVFLAGVFGCRVLGVDLGAENLEQARRHAADAGLTDRVEF 99

Query: 262 VRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +  ++          A+  E  F    D +  +     +     R GL D  V 
Sbjct: 100 RQGDAERLPLEDGACTAVISECSFCLFPDKETAAREMFRVLAAGGRVGLTDMVVD 154


>gi|258648575|ref|ZP_05736044.1| ribosomal protein L11 methyltransferase [Prevotella tannerae ATCC
           51259]
 gi|260851353|gb|EEX71222.1| ribosomal protein L11 methyltransferase [Prevotella tannerae ATCC
           51259]
          Length = 285

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARY 249
           +      ML+ +L+     +  +L++ CG G  +++ A +  D  +A++I +  V  A  
Sbjct: 130 HHETTSQMLKAILSLDLKGK-KVLDMGCGTGLLAILAAMKGADNCMAIDIDEWCVNNAME 188

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N+A NH+NN++++   +                 D+ + +     I  D P
Sbjct: 189 NLALNHINNIEVLLGDAAGLKDKGPF--------DVILANIHLNVILNDMP 231


>gi|260589000|ref|ZP_05854913.1| SmtA protein [Blautia hansenii DSM 20583]
 gi|260540779|gb|EEX21348.1| SmtA protein [Blautia hansenii DSM 20583]
          Length = 564

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           I    L+ +L      +  +L++ CG+G F++++A+    V+ V++    +  A+  +AA
Sbjct: 354 IAQRWLKEILQYVPKKKLKILDVGCGSGFFTILMAQQGHEVIGVDLTADMITRAKE-LAA 412

Query: 254 NHVNNVKIVRMSSKEFTQA 272
               +     M ++    A
Sbjct: 413 EEKADCTFQVMDAENLEFA 431


>gi|320109081|ref|YP_004184671.1| hypothetical protein AciPR4_3928 [Terriglobus saanensis SP1PR4]
 gi|319927602|gb|ADV84677.1| hypothetical protein AciPR4_3928 [Terriglobus saanensis SP1PR4]
          Length = 438

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 11/138 (7%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                L +    NS  Q         L +   A    +G  L++    G F+L +A+  D
Sbjct: 228 FHLNGLQFHFDANS-GQKTGAFLDQRLNYAATARYA-RGRALDICTYQGGFALHMAKVCD 285

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V  V+ ++ ++E A  N+  N          S  +          F  L+  D    +F
Sbjct: 286 SVTGVDQSRSALEVAERNLDLNR---------SQLKAQVDWVEADAFELLRAYDSDMEKF 336

Query: 293 KTIFVDPPRSGLDDATVG 310
            TI +DPP          
Sbjct: 337 DTIVLDPPAFAKSKRAAE 354


>gi|229053947|ref|ZP_04195381.1| hypothetical protein bcere0026_870 [Bacillus cereus AH603]
 gi|228721365|gb|EEL72886.1| hypothetical protein bcere0026_870 [Bacillus cereus AH603]
          Length = 199

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               ++G++L++ CG G   L LA+ F    +  V++ + ++  A+ N A N + N++I+
Sbjct: 54  QMPDVKGNVLDVGCGYGPIGLSLAKEFQNREIYMVDVNERALGLAKENAANNRIENIRIL 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 114 QSSVYENVDG------------------KYAVILSNPPIRAGKDIVHEILEKAVEYLV 153


>gi|45358870|ref|NP_988427.1| methyltransferase-like protein [Methanococcus maripaludis S2]
 gi|45047736|emb|CAF30863.1| methyltransferase related protein [Methanococcus maripaludis S2]
          Length = 380

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 12/98 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L         +L++    G F++        V AV++++ ++  A  N+  N V N   +
Sbjct: 201 LENYVKPGDKVLDICSYTGGFAVHAGIKGGEVTAVDLSEKALAVAEENMELNRVKNYNCM 260

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++ +  + M +  E            +F  + +DPP
Sbjct: 261 VSNAFDAMKEMIKNNE------------KFDVVVLDPP 286


>gi|89070427|ref|ZP_01157729.1| Protein-L-isoaspartate carboxylmethyltransferase [Oceanicola
           granulosus HTCC2516]
 gi|89043993|gb|EAR50170.1| Protein-L-isoaspartate carboxylmethyltransferase [Oceanicola
           granulosus HTCC2516]
          Length = 217

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 19/126 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML+   A        +L+L CG G  + VLAR  D V  VE  +   E A+  ++   
Sbjct: 68  AKMLD---ALDIQPHESVLDLGCGLGYSTAVLARLADFVAGVEDDEARAEEAQQTLSEQG 124

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           V+N  ++  +                L +    S  +  I  +     +  A V  ++  
Sbjct: 125 VDNAAVIHGA----------------LAEGAAKSGPYDIIICEGAVEEIPPALVEQLKDG 168

Query: 316 PHILYI 321
             I+ I
Sbjct: 169 GRIVAI 174


>gi|281201034|gb|EFA75248.1| tRNA guanine-N1--methyltransferase [Polysphondylium pallidum PN500]
          Length = 426

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 91/245 (37%), Gaps = 34/245 (13%)

Query: 55  GDDLYHIMFDQQTKERMR------IDYFMPGSLLINALMIEMMATIRLEPLLR--AKLFQ 106
            D + HI+ D  +K++        I+    G+  +N  + + + +      +       Q
Sbjct: 41  RDRVKHIVDDSDSKDKKLVLLSESIENGNVGAYGVNKQLPDNLQSFLKTHSIEVVKHQVQ 100

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWREC-----AIRLRDALHARKYQIQLIGRANKT--- 158
           ++Y     ++ +  LI   L      E       + L++ L   K  I  +    K    
Sbjct: 101 LNYNNFSYEEVMKELIPTGLPIPHAFEKIGHIAHLNLKEELLPYKNMIGQVILDKKGPQI 160

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV---------LAATKGI 209
           +  L++     ++    RT  +  +          +   ++ W          L  T   
Sbjct: 161 RTVLNK---VGKIDTVFRTFNFELLAGD-----NDLLAQVVYWNSRLQFEHSNLIQTFKS 212

Query: 210 QGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +++++ G G F++  ++    +V A ++   SV+  R N   N  + ++I  + +++
Sbjct: 213 HDIVVDMFAGVGPFAVPASKLVKCKVYANDLNPNSVKYMRENATRNKASTIEISNLDARD 272

Query: 269 FTQAM 273
           F + +
Sbjct: 273 FVREL 277


>gi|91786960|ref|YP_547912.1| SAM-dependent methyltransferase [Polaromonas sp. JS666]
 gi|91696185|gb|ABE43014.1| 23S rRNA m(5)C-1962 methyltransferase / SAM-dependent
           methyltransferase [Polaromonas sp. JS666]
          Length = 422

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  YC  G F++  LA     V +++ + P+++ A+ N+A N  +  +   + +    
Sbjct: 246 RVLNCYCYTGGFTVAALAGGAKHVTSIDSSGPALDRAKANVALNGFDASRTTMLDAD--V 303

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            AM R+ +             F  I +DPP+  
Sbjct: 304 NAMLRQYQ--------KEGRTFDAIVLDPPKFA 328


>gi|78486190|ref|YP_392115.1| methyltransferase small [Thiomicrospira crunogena XCL-2]
 gi|78364476|gb|ABB42441.1| SAM-dependent methyltransferase [Thiomicrospira crunogena XCL-2]
          Length = 398

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/305 (12%), Positives = 93/305 (30%), Gaps = 64/305 (20%)

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHRLLDDAWRECAIRLRD 140
                +       P  R    + D L      +     V  I    ++    E    + +
Sbjct: 88  QAAQALREANFDAPFYRLVFGESDGLPGLVIDRFGDVFVAQITTAGMETLKEELVQTIEN 147

Query: 141 ALHARKYQIQLIGRANK-------TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
             H +   ++    + +       T++ +    + E + +      +             
Sbjct: 148 LYHPQALVLRNDSPSRELEGLSLYTEVAIG--PLPEEIVIEENGAKFAI---------PT 196

Query: 194 INVHMLEWVLAATKGI--------QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSV 244
            N     W                   +L+++   G + +  A      V  V+ +  ++
Sbjct: 197 ENGQKTGWFYDHRMARGRLQDFVKDKTVLDVFSYLGGWGIEAAVAGAKEVTCVDASTFAL 256

Query: 245 EAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--- 300
           +    N   N     V  +  ++ +  +A+  E            ++++  + VDPP   
Sbjct: 257 DGVDRNAELNGVAEKVITIEGNAFDVLKALATE------------AHKYDVVIVDPPAFV 304

Query: 301 ------RSGLD------DATVGMVQAYPHILYISCNPDSLCRDLSI----LSTTHTIERL 344
                 ++G D      +  + ++     ++  SC+   + RD  +    L++ H    +
Sbjct: 305 KRKKDFKAGADGYRRINELAMRLLNPDGILVSASCSHH-MSRDALLQQIQLASRHIDRNI 363

Query: 345 ALFDQ 349
            +FDQ
Sbjct: 364 QMFDQ 368


>gi|82544334|ref|YP_408281.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella boydii Sb227]
 gi|157156593|ref|YP_001462465.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli E24377A]
 gi|300921822|ref|ZP_07137979.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           182-1]
 gi|301327072|ref|ZP_07220354.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 78-1]
 gi|81245745|gb|ABB66453.1| possible protoporphyrinogen oxidase [Shigella boydii Sb227]
 gi|157078623|gb|ABV18331.1| protein methyltransferase HemK [Escherichia coli E24377A]
 gi|300421748|gb|EFK05059.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           182-1]
 gi|300846325|gb|EFK74085.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 78-1]
 gi|332094776|gb|EGI99820.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella boydii 3594-74]
          Length = 277

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 26/223 (11%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     ++++T +    I+     +L D+  ++      DAL  R+   + I       +
Sbjct: 22  RDAEILLEHVTGRGRTFILAFGETQLTDEQCQQL-----DALLTRRRDGEPIAH-----L 71

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
              R++    L V+  TLI R                ++E  LA        +L+L  G 
Sbjct: 72  TGGREFWSLPLFVSPATLIPRPD-----------TECLVEQALARLPEQPCRILDLGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G  +L LA  R    ++AV+    +V  A+ N     + N+ I++    ++  A+  ++ 
Sbjct: 121 GAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ---SDWFSALAGQQF 177

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
              + +      +   +     R     A V        I++I
Sbjct: 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHI 220


>gi|71409126|ref|XP_806926.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT) [Trypanosoma
 gi|70870807|gb|EAN85075.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative [Trypanosoma cruzi]
          Length = 200

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMS 265
           +L+L+CG G  ++ LAR +++V+AV+I   ++EAA+ N+    V + V      
Sbjct: 64  VLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCD 117


>gi|71409977|ref|XP_807306.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT) [Trypanosoma
 gi|70871278|gb|EAN85455.1| proliferator-activated receptor-interacting protein (PRIP)
           interacting protein (PIMT), putative [Trypanosoma cruzi]
          Length = 250

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMS 265
           +L+L+CG G  ++ LAR +++V+AV+I   ++EAA+ N+    V + V      
Sbjct: 64  VLDLFCGCGGDTVQLARVYEKVVAVDIDPDAIEAAKKNVEVYGVGDRVSFYCCD 117


>gi|295095635|emb|CBK84725.1| [protein release factor]-glutamine N5-methyltransferase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 276

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV++   +V  AR N+    
Sbjct: 98  LVEQALARLPAQPCQILDLGTGTGAIALALASERPDCTVTAVDVMPDAVALARRNVERLG 157

Query: 256 VNNVKIVR 263
           +NNV +++
Sbjct: 158 LNNVSVLQ 165


>gi|281349357|gb|EFB24941.1| hypothetical protein PANDA_000852 [Ailuropoda melanoleuca]
          Length = 493

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 95/255 (37%), Gaps = 27/255 (10%)

Query: 79  GSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA-- 135
            +  I+   +E+     + E +L+A L +   +TS    + V  I H  L D        
Sbjct: 160 VNPQISKYNLELTYENFKSEEILKAVLPEGQDVTS--GFSRVGHIAHLNLRDHQLPFKHL 217

Query: 136 --IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS------F 187
               + D        +  I   + T     R++  E L+     +  +  ENS      F
Sbjct: 218 IGQVMIDKNPGITSAVNKINNIDNT----YRNFQMEVLSGEENMMT-KVRENSYAYEFDF 272

Query: 188 TQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           ++   N  ++    E          GD+L +++ G G F++ +A+    V A ++   S 
Sbjct: 273 SKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESH 329

Query: 245 EAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   +N   N V+  VK+  +  K+F Q   R+    +L  +         I ++ P   
Sbjct: 330 KWLLHNCKLNKVDQKVKVFNLDGKDFLQGPVRKELMQQLGPLSKERKHSVHIVMNLPAKA 389

Query: 304 LD--DATVGMVQAYP 316
           ++       ++   P
Sbjct: 390 IEFLSVFKSLLDGPP 404


>gi|223982933|ref|ZP_03633145.1| hypothetical protein HOLDEFILI_00421 [Holdemania filiformis DSM
           12042]
 gi|223965094|gb|EEF69394.1| hypothetical protein HOLDEFILI_00421 [Holdemania filiformis DSM
           12042]
          Length = 402

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
            VL         +L+ +   G F+L  A  +   V+AV++++ +++  R N   NH+ + 
Sbjct: 219 RVLLRQMAHGKRVLDCFSHTGGFALNAALGNAQSVVAVDVSQTALDQGRANAVLNHLEDR 278

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH 317
           ++ V+    E+                     ++  I +DPP       T+      Y  
Sbjct: 279 IQFVKADVFEYLDRCAM--------------GQYDIIVLDPPAFTKSRKTIHQAYAGYKR 324

Query: 318 ILY 320
           I Y
Sbjct: 325 INY 327


>gi|163938109|ref|YP_001642993.1| methyltransferase small [Bacillus weihenstephanensis KBAB4]
 gi|163860306|gb|ABY41365.1| methyltransferase small [Bacillus weihenstephanensis KBAB4]
          Length = 199

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               ++G++L++ CG G   L LA+ F    +  V++ + ++  A+ N A N + N++I+
Sbjct: 54  QMPDVKGNVLDVGCGYGPIGLSLAKEFQNREIHMVDVNERALGLAKENAANNRIENIRIL 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 114 QSSVYENVDG------------------KYAVILSNPPIRAGKDIVHEILEKAVEYLV 153


>gi|325273243|ref|ZP_08139523.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas sp. TJI-51]
 gi|324101620|gb|EGB99186.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas sp. TJI-51]
          Length = 276

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 19/114 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   +V AV+    +   A  N  
Sbjct: 94  TELLVETALELQPAAPARVLDLGTGTGAIALALASERPAWQVTAVDRVAEAAALAERNRQ 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              ++N ++            R    F+ L        RF  I  +PP     D
Sbjct: 154 RLSLSNTQV------------RLSHWFDSL-----AGERFDLIVSNPPYIAAAD 190


>gi|302527461|ref|ZP_07279803.1| conserved hypothetical protein [Streptomyces sp. AA4]
 gi|302436356|gb|EFL08172.1| conserved hypothetical protein [Streptomyces sp. AA4]
          Length = 210

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LAA    +G +L+  CG G  +L LA     ++ +++A+ +V  A+       +   +  
Sbjct: 41  LAAEGAFRGTVLDAGCGTGENALHLAASGLSIVGIDVAETAVAQAQEKARRRGIA-AEFA 99

Query: 263 RMSS 266
              +
Sbjct: 100 VGDA 103


>gi|270263999|ref|ZP_06192267.1| hypothetical protein SOD_f02130 [Serratia odorifera 4Rx13]
 gi|270042192|gb|EFA15288.1| hypothetical protein SOD_f02130 [Serratia odorifera 4Rx13]
          Length = 83

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    LEW+          +L+L+CG G      A     VL +E     V   +YN   
Sbjct: 1   MAAQALEWL---DIQPNDRVLDLFCGMGQLYPAAA-----VLGIEGIATLVANGQYNAHK 52

Query: 254 NHVNNVKIV 262
           N +NN    
Sbjct: 53  NKLNNAPFF 61


>gi|256082248|ref|XP_002577371.1| s-adenosylmethionine-dependent methyltransferase related
           [Schistosoma mansoni]
 gi|238662684|emb|CAZ33609.1| s-adenosylmethionine-dependent methyltransferase related
           [Schistosoma mansoni]
          Length = 649

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
               +  V   +      +L+++CG G+ ++  A    RV+A+E     +  A  N    
Sbjct: 430 QAKRIYRVFTPSTKGSYTVLDIFCGTGSNAIQFALRGFRVIAIESDPIRISMASNNAEIY 489

Query: 255 HVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            V + ++ V      FT A ++ +     +    ++  +    + PP  G
Sbjct: 490 GVRHLIEFVCEDY--FTWAWKQIQSIFVSQSGVTNNLGYTAALMSPPWGG 537


>gi|21227877|ref|NP_633799.1| methyltransferase [Methanosarcina mazei Go1]
 gi|20906292|gb|AAM31471.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 336

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                  +++++ G G +S++LA+     RV+A++    +V     NI+ N   N++ + 
Sbjct: 180 WIKEGDTVVDMFAGVGPYSILLAKSKKPSRVVAIDKNPEAVRYLNENISLNSAKNIEAIE 239

Query: 264 MSSKEFTQAMRR 275
             ++E  +    
Sbjct: 240 GDAREEAKRFAG 251


>gi|21233648|ref|NP_639565.1| oxidoreductase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770613|ref|YP_245375.1| oxidoreductase [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993847|ref|YP_001905857.1| hypothetical protein xccb100_4452 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21115519|gb|AAM43447.1| oxidoreductase [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575945|gb|AAY51355.1| oxidoreductase [Xanthomonas campestris pv. campestris str. 8004]
 gi|167735607|emb|CAP53825.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris]
          Length = 389

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 210 QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +L+L C  G F++   AR    VL V+I +  +  A+ N   N+V   K V+     
Sbjct: 216 DKTVLDLCCNTGGFAVYAAARGATEVLGVDIDEDVIAIAKGNAKLNNVR-PKFVQAD--- 271

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
                     F  L+D      ++  + +DP
Sbjct: 272 ---------IFPWLRDAANRGEKYDVVILDP 293


>gi|302186443|ref|ZP_07263116.1| modification methylase HemK [Pseudomonas syringae pv. syringae 642]
          Length = 277

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          LL+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFASAQLLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +NN ++                 F       +   +F  I  +PP
Sbjct: 154 KRLQLNNAEV-----------------FESHWFSGLQGRQFDLIISNPP 185


>gi|258540448|ref|YP_003174947.1| 16S rRNA m(2)G 1207 methyltransferase [Lactobacillus rhamnosus Lc
           705]
 gi|257152124|emb|CAR91096.1| 16S rRNA m(2)G 1207 methyltransferase [Lactobacillus rhamnosus Lc
           705]
          Length = 198

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 21/121 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
             ++  VLA T    G +L++  G G   L LA+HF   +V   ++ + ++  A+ N A 
Sbjct: 46  RVLIAAVLAETLP-DGPILDVGAGYGPIGLPLAKHFPNRQVTMSDVNERALALAKQNAAD 104

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + NV I+  S                    D    +F  +  +PP         G++ 
Sbjct: 105 NGITNVSIIESSM------------------YDSIDDQFAVVVTNPPIRAGKAIVSGILS 146

Query: 314 A 314
            
Sbjct: 147 G 147


>gi|254230124|ref|ZP_04923520.1| putative methyltransferase [Vibrio sp. Ex25]
 gi|151937369|gb|EDN56231.1| putative methyltransferase [Vibrio sp. Ex25]
          Length = 246

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G       +R  ++V  VE+   + +  + N+A
Sbjct: 93  VKETLFNWLAQDVP--QAKCLDLFAGSGGLGFESASRQAEQVTMVELNPQAFQQLQKNVA 150

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           + + NN+++V   +  F +                       +F+DPP R GL D TV +
Sbjct: 151 SLNANNIQVVNTDALSFLKQ---------------PGTAHHVVFIDPPFRKGLLDETVAL 195

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 196 LEQNGWLAEDAMIYI 210


>gi|194337569|ref|YP_002019363.1| magnesium protoporphyrin O-methyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310046|gb|ACF44746.1| magnesium protoporphyrin O-methyltransferase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 232

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y D++L+    T+          Q +A +     +W+          +L+  CG G FS+
Sbjct: 31  YGDDKLSSVRNTVR---------QGHAVMMDKAFDWLQQLGLPKGASILDAGCGTGLFSI 81

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKD 284
            LA+   +V +V+IA   V  A+       V  N+     + +  +        F+ L  
Sbjct: 82  RLAKAGYKVTSVDIASQMVNKAKEEATRQGVEKNITFEVNTLESVSGTYDAVVCFDVLIH 141

Query: 285 IDIHSY 290
                +
Sbjct: 142 YPAEGF 147


>gi|326317245|ref|YP_004234917.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374081|gb|ADX46350.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 236

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   ML+            +LE+  G+G  + +LA   + V+ +EI    VE AR N+
Sbjct: 83  PRVEARMLQ---DLQVKPTDRVLEIGAGSGYMAALLAHRAEHVVTLEIVPDLVEFARENL 139

Query: 252 AANHVNNVKIVRMS 265
            +  ++NV + +  
Sbjct: 140 LSAGIDNVTVRQGD 153


>gi|262375290|ref|ZP_06068523.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter lwoffii SH145]
 gi|262309544|gb|EEY90674.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter lwoffii SH145]
          Length = 272

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E VL         +++L  G G  +L LA  R    V A +I +P++E A+YN  
Sbjct: 92  TEVLVETVLKLDLPEDARVVDLGTGTGAIALSLASERSNWTVTASDIYEPTLEVAKYNAE 151

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS------GLDD 306
            + + NV+ V  S  +       +   +    ID      + +  +P R+      GL D
Sbjct: 152 QHDIENVEFVLGSWLKPFGRQFFDAIVSNPPYIDADDVHMQNLATEPERALVADKKGLAD 211

Query: 307 ATVGMVQAYPHI 318
             + ++QA  H+
Sbjct: 212 IEMIILQAKKHL 223


>gi|260803097|ref|XP_002596428.1| hypothetical protein BRAFLDRAFT_130336 [Branchiostoma floridae]
 gi|229281683|gb|EEN52440.1| hypothetical protein BRAFLDRAFT_130336 [Branchiostoma floridae]
          Length = 774

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   ++ +V           +++ CG+G  +++LA HF RV  +++++  V  A    
Sbjct: 59  PELAEKIVTFVREKKTTPLDQAVDIGCGSGQSTVILAPHFQRVTGIDVSESQVAIA---A 115

Query: 252 AANHVNNVKIVRMSSKEF 269
           A N ++NV+     ++  
Sbjct: 116 AQNKLSNVQYRVGGAEHI 133



 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A     ++ +V           +++ CG+G  S +LA HF  VL +++++P +  A  N 
Sbjct: 305 AEFAEKVVTFVKEKRSSPLLRAVDIGCGSGQSSEILAPHFQHVLGIDVSEPQIAMASAN- 363

Query: 252 AANHVNNVKIVRMSSK 267
             N +NNV+     ++
Sbjct: 364 --NKLNNVEYRVAPAE 377



 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             +++ CG+G  S +LA HF  VL +++++P +  A  N   N +NNV+     ++
Sbjct: 553 HAVDIGCGSGQSSEILAPHFQHVLGIDVSEPQIAMASAN---NKLNNVEYRVAPAE 605


>gi|149051438|gb|EDM03611.1| TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) (predicted),
           isoform CRA_b [Rattus norvegicus]
          Length = 500

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 86/264 (32%), Gaps = 32/264 (12%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
               + E +LRA L +   +TS    + V  I H  L D        +   +  +   I 
Sbjct: 169 YENFKSEEILRAVLPEGQDVTS--GFSRVGHIAHLNLRDHQLPFKHLIGQVMVDKNPGIT 226

Query: 151 LIGRANKTKICLDRDYVDERLT--------VAGRTLIYRQIENSFTQP--NAGINVHMLE 200
                        R++  E L         V      Y   E  F++   N  ++    E
Sbjct: 227 SAVNKTSNIDNTYRNFQMEVLCGEENMLTKVRENNYTY---EFDFSKVYWNPRLST---E 280

Query: 201 WVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
                     GD+L +++ G G F++  AR    V A ++   S     +N   N V+  
Sbjct: 281 HGRITELLNPGDVLFDVFAGVGPFAIPAARKNCTVFANDLNPESHRWLLHNCKLNKVDQK 340

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP- 316
           VK+  M  K+F Q   RE    RL            +   P ++         ++   P 
Sbjct: 341 VKVFNMDGKDFLQGPVREELMLRLGLSTEGKPSLHIVMNLPAKAIEFLSVFRSLLDGQPC 400

Query: 317 -----HILYISC-----NPDSLCR 330
                 I++  C     +P    R
Sbjct: 401 STERLPIVHCYCFSKDSDPAKDAR 424


>gi|21672941|ref|NP_661006.1| hypothetical protein CT0100 [Chlorobium tepidum TLS]
 gi|21645998|gb|AAM71348.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 399

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 16/120 (13%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           EW  +  +G     ++L  G G  +L LA+ FD V++ E  +     A  N     V NV
Sbjct: 83  EWKASLMRG--WRAIDLTGGLGIDTLFLAQRFDSVVSCERNEALARLAEANRRMMGVTNV 140

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           + +   S+E                       F  + VDP R      + G+  + P ++
Sbjct: 141 ETLIGDSEELLA--------------GYADDSFDWVLVDPARREHGGRSAGLSASSPDVV 186


>gi|23097566|ref|NP_691032.1| hypothetical protein OB0111 [Oceanobacillus iheyensis HTE831]
 gi|22775789|dbj|BAC12067.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 204

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 19/100 (19%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           I GD+L++ CG G   L LA  F    V  V+I   +VE A+ N + N++ NV I     
Sbjct: 61  INGDILDVGCGYGPIGLSLAAEFEDRAVSMVDINDRAVELAKRNASVNNITNVTIQTSD- 119

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
                          +      + RF  +  +PP R+G  
Sbjct: 120 ---------------IYSAIGETLRFAAVVTNPPIRAGKK 144


>gi|118581940|ref|YP_903190.1| hypothetical protein Ppro_3540 [Pelobacter propionicus DSM 2379]
 gi|118504650|gb|ABL01133.1| SAM-dependent methyltransferase [Pelobacter propionicus DSM 2379]
          Length = 409

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 79/255 (30%), Gaps = 34/255 (13%)

Query: 67  TKERMRIDYFMPGSLLINALMIE-MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           + ER+R+D       L  +L +    A +      R    + D L   +       +  +
Sbjct: 68  SHERIRLDAAWIRRRLEASLTLRRDHADLGESDAFRLVNAEGDGLPGLTVDCYGQFLMVQ 127

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI--------------CLDRDYVDERL 171
           L    WR     L   L        +  ++   K                L  +   +RL
Sbjct: 128 LYCAGWRPHLKTLSGELMELLQPRGIYEKSRPQKTRELEAARDDKRYGRLLSGESAPQRL 187

Query: 172 TVAGRTLIYRQI-ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR 229
            V    L +    E      N G+ +            ++G  +L L+   G FS+  A 
Sbjct: 188 QVRENGLSFLVSLEQG---LNTGLFLDQRRNRRDLMNRVEGKRVLNLFAYTGAFSVAAAS 244

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
              RV +V+++   +E AR N   N +N    + +          + +            
Sbjct: 245 AGARVTSVDVSAGYLEWARDNFGINRLNPKRHEFITGDCLAVLCQLAQ------------ 292

Query: 288 HSYRFKTIFVDPPRS 302
               F  I +DPP  
Sbjct: 293 KGQGFDVILMDPPSF 307


>gi|92115084|ref|YP_575012.1| SAM-dependent methyltransferase [Chromohalobacter salexigens DSM
           3043]
 gi|91798174|gb|ABE60313.1| SAM-dependent methyltransferase [Chromohalobacter salexigens DSM
           3043]
          Length = 396

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 78/260 (30%), Gaps = 54/260 (20%)

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTSQS----DQAIVTLIYHR 125
            +D  +  SLL++     +   A +  +P  R    + D L        D  +V  +   
Sbjct: 72  DVDVRLDRSLLVHRFKQALSLRARLFAKPFYRLVHGEGDLLPGLIIDRFDDVLVVQLNTV 131

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKT----------------KICLDRD---Y 166
            +D    E    L   L  R    +      +                 ++ L+ +   +
Sbjct: 132 GMDRLRDEIVAALEKVLAPRAIVFKNDSSGRRQEQLGEEVEVAYGELPDQVLLEENGVRF 191

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           V   L        +    N                           +L+++   G++ + 
Sbjct: 192 VAPVLDGQKTGWFFDHRPN---------------RAWLNGLVAGKRVLDVFSYVGSWGIQ 236

Query: 227 LARHFDR-VLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKD 284
            A H    VL V+ +  ++E    N A N +   V I    + E   A++ E E      
Sbjct: 237 AAAHGASDVLCVDSSAQALEHVAENAALNGLAEQVAIGEGDAFEALAALKAEGE------ 290

Query: 285 IDIHSYRFKTIFVDPPRSGL 304
                 +F  I +DPP    
Sbjct: 291 ------QFDVIVLDPPAFIK 304


>gi|311070753|ref|YP_003975676.1| ribosomal RNA methyltransferase [Bacillus atrophaeus 1942]
 gi|310871270|gb|ADP34745.1| ribosomal RNA methyltransferase [Bacillus atrophaeus 1942]
          Length = 201

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +GD L++ CG G   L LA  F    +  +++ + +VE +  N   N + NV+I + 
Sbjct: 56  PEAEGDFLDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEHNGIENVRIYQS 115

Query: 265 S 265
            
Sbjct: 116 D 116


>gi|158319737|ref|YP_001512244.1| hypothetical protein Clos_0689 [Alkaliphilus oremlandii OhILAs]
 gi|158139936|gb|ABW18248.1| conserved hypothetical protein [Alkaliphilus oremlandii OhILAs]
          Length = 287

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 21/147 (14%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNG 221
           + ER T++   L +      F          V+   M+E + +A + I+  +L L+   G
Sbjct: 70  LPERWTISFGPLSFYIEPTGFKHTGLFPEQAVNWKWMMEKIQSAGRPIK--VLNLFAYTG 127

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREF 279
             ++  A     V  V+ +K  V  A+ N+  + + N  V+ +     +F Q  +R    
Sbjct: 128 GATVASAYAGAEVCHVDASKGMVTWAKENMELSGLGNKPVRFIVDDVMKFVQREKR---- 183

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                       +  I +DPP  G   
Sbjct: 184 --------RGKTYDAIIMDPPSYGRGP 202


>gi|330972815|gb|EGH72881.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 277

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAQVLDLGTGTGAIALALANDRQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +NN ++                 F       +   +F  I  +PP
Sbjct: 154 QRLQLNNAEV-----------------FESHWFSGLQGRQFDLIISNPP 185


>gi|296194691|ref|XP_002745061.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Callithrix
           jacchus]
          Length = 509

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 94/258 (36%), Gaps = 23/258 (8%)

Query: 60  HIMFDQQTKER--MRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + MF   + E   + +   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 143 YKMFTHDSFEEAELSVLEQLNVSPQISEYNLELTYENFKSEEILRAVLPEGQDVTS--GF 200

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT---- 172
           + V  I H  L D        +   +  +   I            + R++  E L+    
Sbjct: 201 SRVGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQN 260

Query: 173 ----VAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
               V      Y   E  F++   N  ++    E          GD+L +++ G G F++
Sbjct: 261 MMTKVRENNYTY---EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAI 314

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKD 284
            +A+    V A ++   S +   +N   N V+ NVK+  +  K+F Q   +E     L  
Sbjct: 315 PVAKKNCTVFANDLNPESHKWLLHNCKLNKVDQNVKVFNLDGKDFLQGPIKEELMQLLSL 374

Query: 285 IDIHSYRFKTIFVDPPRS 302
                     +   P ++
Sbjct: 375 SKERKPSVHIVMNLPAKA 392


>gi|268326472|emb|CBH40060.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 11 family [uncultured archaeon]
          Length = 268

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 6/108 (5%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           +DY  E   +A     + +        N       +   L        ++LE+  G G F
Sbjct: 23  KDYGIEYWDIAAEDFSFSRK------TNGYEYGGKVRNALGEVLNSDSEVLEIGPGPGTF 76

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +  A    +V AVE ++  +   + N     + N +I+    ++  +
Sbjct: 77  VIPFASEVRKVTAVEPSEGMIGELKKNAEEKGIGNFEIINKKWEDVDE 124


>gi|222112164|ref|YP_002554428.1| sam-dependent methyltransferase [Acidovorax ebreus TPSY]
 gi|221731608|gb|ACM34428.1| SAM-dependent methyltransferase [Acidovorax ebreus TPSY]
          Length = 395

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  YC  G F++  LA    +V +++ + P++E AR ++  N  +  +   + + +  
Sbjct: 220 RVLNCYCYTGGFTVAALAGGAGQVTSIDSSGPALERARAHVQLNGFDAARAEFLDA-DVN 278

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            ++RR               RF  I +DPP+  
Sbjct: 279 GSLRR---------FLAEGRRFDAIVLDPPKFA 302


>gi|212223821|ref|YP_002307057.1| Met-10+ like protein [Thermococcus onnurineus NA1]
 gi|212008778|gb|ACJ16160.1| Met-10+ like protein [Thermococcus onnurineus NA1]
          Length = 331

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +++ G G +S++LA+    V A +I   +V     N   N + NV  +    ++    
Sbjct: 185 VFDMFAGVGPYSILLAKKAKLVFACDINPWAVRYLEENRKLNKMPNVVPILGDVRKIAGR 244

Query: 273 MRREREFNRLKDI 285
           +  +R    L   
Sbjct: 245 IEADRVIMNLPKF 257


>gi|121595976|ref|YP_987872.1| SAM-dependent methyltransferase [Acidovorax sp. JS42]
 gi|120608056|gb|ABM43796.1| SAM-dependent methyltransferase / 23S rRNA m(5)C-1962
           methyltransferase [Acidovorax sp. JS42]
          Length = 395

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  YC  G F++  LA    +V +++ + P++E AR ++  N  +  +   + + +  
Sbjct: 220 RVLNCYCYTGGFTVAALAGGAGQVTSIDSSGPALERARAHVQLNGFDAARAEFLDA-DVN 278

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            ++RR               RF  I +DPP+  
Sbjct: 279 GSLRR---------FLAEGRRFDAIVLDPPKFA 302


>gi|66044203|ref|YP_234044.1| modification methylase HemK [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254910|gb|AAY36006.1| Modification methylase HemK [Pseudomonas syringae pv. syringae
           B728a]
          Length = 277

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAQVLDLGTGTGAIALALANDRQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +NN ++                 F       +   +F  I  +PP
Sbjct: 154 QRLQLNNAEV-----------------FESHWFSGLQGRQFDLIISNPP 185


>gi|324326143|gb|ADY21403.1| hypothetical protein YBT020_10785 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 237

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A     + E ++         +L+L CG G+F+  L  +   V  ++ +   +E AR N 
Sbjct: 25  AEQAYLLFEKLVLQYAPPHSHILDLCCGTGHFTKKLIDNSFVVTGIDGSAQMIEYARQNA 84

Query: 252 AANHVNNVKIVRMSSKEF 269
                 +   +   ++ F
Sbjct: 85  -----PDATFIVDDARYF 97


>gi|315499962|ref|YP_004088765.1| sam dependent methyltransferase [Asticcacaulis excentricus CB 48]
 gi|315417974|gb|ADU14614.1| SAM dependent methyltransferase [Asticcacaulis excentricus CB 48]
          Length = 310

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 26/189 (13%)

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
            +     D W +                    R    +  L  D    R+   GR   +R
Sbjct: 46  WWSPKYPDLWDKADAVFDAENEDEDGGRWSFRRRPDEQWALGYD----RVKFYGRFTAFR 101

Query: 182 QIENSFTQPNAGINVHMLEWVLA----ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
            +  +F         +   W         +  Q  +L L+   G  SLV A    RV  V
Sbjct: 102 HL--AFF---PEQAAN---WAWQKTAIEARNDQPRVLNLFGYTGVASLVCAAAGARVTHV 153

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           + +K SV  AR N A + + +   +R   ++  + ++RE +            +++ I +
Sbjct: 154 DASKKSVAYARDNAALSGMADA-PIRWIVEDARKYVQREVK---------RGSKYEGIIL 203

Query: 298 DPPRSGLDD 306
           DPP+ G   
Sbjct: 204 DPPKYGRGP 212


>gi|268324923|emb|CBH38511.1| conserved hypothetical protein, methyltransferase family
           [uncultured archaeon]
          Length = 263

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 35/68 (51%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  +L++  G G F++ LA++   V  VE +K   +    +   N +NN++++    ++ 
Sbjct: 60  ESTVLDVGAGTGAFAIPLAKNVSAVTVVEPSKEMAQYLMKSADRNGLNNIEVITKRWEDI 119

Query: 270 TQAMRRER 277
           ++   RE 
Sbjct: 120 SRDDLREY 127


>gi|302867527|ref|YP_003836164.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302570386|gb|ADL46588.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 262

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 23/68 (33%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A   G    L++L CG G  S+ LA     V+ ++     +  AR         N   
Sbjct: 29  AAAFQLGADDTLVDLGCGTGQLSIPLADRVGAVIGMDPEPDMLAIARRTALDRGTANATW 88

Query: 262 VRMSSKEF 269
           +     + 
Sbjct: 89  MLGGDGDV 96


>gi|313127018|ref|YP_004037288.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
 gi|312293383|gb|ADQ67843.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
          Length = 212

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V  A    +  +L+L  G G  +L LA    RV+  +I++  +E AR       ++NV+ 
Sbjct: 36  VEHADPTDEDVVLDLGTGTGAIALALAPDAKRVVGRDISEGMLEQAREKAQDAGIDNVEF 95

Query: 262 VRMSSKE 268
                ++
Sbjct: 96  GEGRFRD 102


>gi|158312985|ref|YP_001505493.1| putative methyltransferase [Frankia sp. EAN1pec]
 gi|158108390|gb|ABW10587.1| putative methyltransferase [Frankia sp. EAN1pec]
          Length = 185

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 15/93 (16%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             + +LY G+G   L  L+R     L V+    +V   R N  A  +   ++VR + +  
Sbjct: 46  ARVADLYAGSGAVGLEALSRGAAHALLVDRDATAVRTLRRNAEALGLAGAEVVRSAVERV 105

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
             A   E               +  +F+DPP +
Sbjct: 106 LSATPAEA--------------YDVVFLDPPYA 124


>gi|330951101|gb|EGH51361.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae Cit 7]
          Length = 277

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAQVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +NN ++                 F       +   +F  I  +PP
Sbjct: 154 QRLQLNNAEV-----------------FESHWFSGLQGRQFDLIISNPP 185


>gi|299068570|emb|CBJ39798.1| putative sam-dependent methyltransferase protein [Ralstonia
           solanacearum CMR15]
          Length = 274

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANH 255
            M ++        Q  LL++  G+G  +L LAR+   RV  V++   +++ AR    A  
Sbjct: 49  EMRQFARWLELSPQSHLLDVCSGSGGPALFLARNSGCRVTGVDLHPDALQTARQLAQALE 108

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++          +F +   R+R        D   +   ++   P R  L      +++  
Sbjct: 109 LH-------DRSQFVECDVRQRMPFPDGTFDAL-WCIDSVIHIPDRLALLREWCRLLKPG 160

Query: 316 PHILY 320
              LY
Sbjct: 161 GRFLY 165


>gi|94311641|ref|YP_584851.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Cupriavidus metallidurans CH34]
 gi|93355493|gb|ABF09582.1| Protein-L-isoaspartate O-methyltransferase [Cupriavidus
           metallidurans CH34]
          Length = 217

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 24/160 (15%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+           ++LE+  G+G  + +LA     VL V++    V  AR N+
Sbjct: 63  PRVEARLLQ---DLNVRKHENVLEIGAGSGYMAALLANRARHVLTVDVHPELVALARQNL 119

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A   + NV +   ++ E                    +  +  I +      +  A +  
Sbjct: 120 ANAGITNVDVAEGNAAE----------------GWAVAAPYDVICISASVPEIPSAILSQ 163

Query: 312 VQAYPHI-LYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
           V+    I   +   P    R ++  S         + D F
Sbjct: 164 VKVGGRIAAIVGSAPVMEARIITRASE----TEYQVVDLF 199


>gi|323669718|emb|CBJ94841.1| Putative methyltransferase [Salmonella bongori]
          Length = 294

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 7/116 (6%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           +    A ++KI  D     +R+      L       S  Q    +    + W +A+    
Sbjct: 12  RPQLSAEESKIPWDEPAFSQRMLENH--LSQEHDWASRRQT---VIEQQVAW-IASQLPA 65

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              +L+L CG G ++  LA    R   V+ +  S+E AR    A  + N+  +   
Sbjct: 66  GARVLDLGCGPGFYTRRLAERGFRCTGVDFSPASIEWARQQAQAAEL-NIDYIHQD 120


>gi|294793156|ref|ZP_06758302.1| putative ribosomal RNA adenine dimethylase [Veillonella sp. 6_1_27]
 gi|294456101|gb|EFG24465.1| putative ribosomal RNA adenine dimethylase [Veillonella sp. 6_1_27]
          Length = 276

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 41/97 (42%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +   L++       +L++  G G+F++  A+H   V A+E +K  V   + N    +V N
Sbjct: 57  VYAALSSVLTPDSSMLDIGAGPGSFTIPFAQHIKSVTAIEPSKGMVAVLKENAKELNVEN 116

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           + I+    ++  Q    + +F+ +    +        
Sbjct: 117 INIIEEMVQDLPQDGSLDSQFDVVAISLVLWMFPDVW 153


>gi|167752881|ref|ZP_02425008.1| hypothetical protein ALIPUT_01143 [Alistipes putredinis DSM 17216]
 gi|167659950|gb|EDS04080.1| hypothetical protein ALIPUT_01143 [Alistipes putredinis DSM 17216]
          Length = 383

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 11/137 (8%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              +F Q ++           A        +L+L CG G  +L L++ F  V+ +E    
Sbjct: 67  PPLAFEQASSEACA-------ARKSCSGNTVLDLTCGLGVDALYLSKRFREVITLERDAT 119

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
               A  N       N++++  S++ F  +     ++    D D  S   + +       
Sbjct: 120 LAAVAEENFRRLGATNIRVINSSAEAFLASTLDHFDW-IYADPDRRSAGGRKLVRL---E 175

Query: 303 GLDDATVGMVQAYPHIL 319
                   ++     I 
Sbjct: 176 DCSPDIPKLLPELRRIA 192


>gi|237742324|ref|ZP_04572805.1| methyltransferase [Fusobacterium sp. 4_1_13]
 gi|229429972|gb|EEO40184.1| methyltransferase [Fusobacterium sp. 4_1_13]
          Length = 370

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 21/133 (15%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR-- 233
            L ++  E             ++E  +   + ++  ++L++  G G  S+ +A       
Sbjct: 151 GLPFKVSEGVLIP--RADTEILVEQCIQLMREVEEPNILDIGSGTGAISIAIANELKSSS 208

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  ++I + ++E A  N   N + NV  ++                  L +     +++ 
Sbjct: 209 VTGIDINEKAIELANENKTLNKIENVNFIKSD----------------LFEKIDKDFKYD 252

Query: 294 TIFVDPPRSGLDD 306
            I  +PP    ++
Sbjct: 253 LIVSNPPYISKNE 265


>gi|229009610|ref|ZP_04166836.1| hypothetical protein bmyco0001_860 [Bacillus mycoides DSM 2048]
 gi|229131108|ref|ZP_04260020.1| hypothetical protein bcere0014_860 [Bacillus cereus BDRD-ST196]
 gi|228652321|gb|EEL08246.1| hypothetical protein bcere0014_860 [Bacillus cereus BDRD-ST196]
 gi|228751632|gb|EEM01432.1| hypothetical protein bmyco0001_860 [Bacillus mycoides DSM 2048]
          Length = 213

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               ++G++L++ CG G   L LA+ F    +  V++ + ++  A+ N A N + N++I+
Sbjct: 68  QMPDVKGNVLDVGCGYGPIGLSLAKEFQNREIHMVDVNERALGLAKENAANNRIENIRIL 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 128 QSSVYENVDG------------------KYAVILSNPPIRAGKDIVHEILEKAVEYLV 167


>gi|152970780|ref|YP_001335889.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150955629|gb|ABR77659.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 283

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV++   +V  A  N     
Sbjct: 99  LVEQALARLPTAPCRILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAEHLS 158

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + NV I +                       +   RF TI  +PP
Sbjct: 159 IANVTISQSD-----------------WFSALAGQRFATIVSNPP 186


>gi|21313170|ref|NP_083856.1| tRNA (guanine-N(1)-)-methyltransferase [Mus musculus]
 gi|81904625|sp|Q9D0C4|TRMT5_MOUSE RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; AltName:
           Full=M1G-methyltransferase; AltName: Full=tRNA [GM37]
           methyltransferase; AltName: Full=tRNA methyltransferase
           5
 gi|12847791|dbj|BAB27710.1| unnamed protein product [Mus musculus]
 gi|15214776|gb|AAH12521.1| TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) [Mus
           musculus]
          Length = 501

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 21/239 (8%)

Query: 77  MPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
           +  S  ++   +E+     + E +L+A L +   +TS    + V  I H  L D      
Sbjct: 155 LDVSPQLSQYNLELTYENFKSEEILKAVLPEGQDVTS--GFSRVGHIAHLNLRDHQLPFK 212

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--------VAGRTLIYRQIENSF 187
             +   +  +   I              R++  E L         V      Y   E  F
Sbjct: 213 HLIGQVMVDKNPGITSAVNKTSNIDNTYRNFQMEVLCGEENMLTKVRENNYTY---EFDF 269

Query: 188 TQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           ++   N  ++    E          GD+L +++ G G F++  AR    V A ++   S 
Sbjct: 270 SKVYWNPRLST---EHGRITELLNPGDVLFDVFAGVGPFAIPAARKNCTVFANDLNPESH 326

Query: 245 EAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +   +N   N V+  VK+  M  K+F Q   RE    RL            +   P ++
Sbjct: 327 KWLLHNCKLNKVDQKVKVFNMDGKDFIQGPVREELMLRLGLSAEAKPSVHIVMNLPAKA 385


>gi|312134917|ref|YP_004002255.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor owensensis OL]
 gi|311774968|gb|ADQ04455.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor owensensis OL]
          Length = 288

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 87/232 (37%), Gaps = 50/232 (21%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQ--------IQLIGRANKTKICLDRDYVDER------ 170
           + + +   E A+RLRD    ++          +  I   +KT++ L++D   E+      
Sbjct: 6   KTISEVLNEAALRLRDYCENKEEDYKKIALMMVSHILDIDKTEVILNKDLPVEQDKYEKI 65

Query: 171 ---LTVAGRTLIYRQ-IENSFTQP-------NAGI----NVHMLEWVLAATKGIQG-DLL 214
              ++   +    +     +F          N  I       ++E  +   KG +    L
Sbjct: 66  VNAISKYLQDYPLQYCTNKAFFMGLEFYVDENVLIPRFDTEVLVEVAIEIFKGRKNLYFL 125

Query: 215 ELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQA 272
           ++  G+G  ++ L R  D +VLAV+I++ ++E AR N   N V N V  VR +  E    
Sbjct: 126 DIGTGSGCIAVALCRFLDCKVLAVDISERALEVARKNAKLNGVENRVSFVRSNLFENIP- 184

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYIS 322
                           + RF  I  +PP     +       V   PHI   S
Sbjct: 185 ---------------KNLRFDAILSNPPYISESERFKLEKQVLKEPHIALFS 221


>gi|157690889|ref|YP_001485351.1| 16S rRNA methyltransferase [Bacillus pumilus SAFR-032]
 gi|157679647|gb|ABV60791.1| possible 16S rRNA methyltransferase [Bacillus pumilus SAFR-032]
          Length = 201

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             + GD+L++ CG G   L LA       +  +++ + +VE ++ N   N ++NV+I + 
Sbjct: 56  PDVDGDVLDVGCGYGPIGLSLANEMTSRTIHMIDVNERAVELSKENAKHNRIDNVRIYQS 115

Query: 265 S 265
            
Sbjct: 116 D 116


>gi|121608525|ref|YP_996332.1| HemK family modification methylase [Verminephrobacter eiseniae
           EF01-2]
 gi|121553165|gb|ABM57314.1| modification methylase, HemK family [Verminephrobacter eiseniae
           EF01-2]
          Length = 294

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 22/131 (16%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251
              +++W L     +    +L+L  G+G  +L L RH     +LA++ +  ++  AR N 
Sbjct: 106 TETLVDWALEVIAPLPAPRVLDLGTGSGAIALALQRHCPGAWILAIDASADALAVARANA 165

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +                     +  +   +      F  I  +PP  G  D  +  
Sbjct: 166 GRLGL-------------------PVQLAQGHWLSGAPAGFDAIVSNPPYLGAQDPHLAA 206

Query: 312 VQAYPHILYIS 322
           +   P    +S
Sbjct: 207 LAHEPRQALVS 217


>gi|119897152|ref|YP_932365.1| ribosomal protein L11 methyltransferase [Azoarcus sp. BH72]
 gi|119669565|emb|CAL93478.1| ribosomal protein L11 methyltransferase [Azoarcus sp. BH72]
          Length = 294

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+    +     +L+  CG+G   +  AR     VL ++I   ++EAAR N + N V 
Sbjct: 154 LEWLCDTVQPGTS-VLDYGCGSGILGIAAARLGAGDVLGIDIDDKAIEAARDNASRNGVT 212


>gi|110680008|ref|YP_683015.1| hypothetical protein RD1_2799 [Roseobacter denitrificans OCh 114]
 gi|109456124|gb|ABG32329.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 407

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 15/121 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNV 259
             AA+      +L+++   G FSL  LA      LAV+ +  ++  A     A+   +  
Sbjct: 226 AFAASLARDARVLDVFSHVGGFSLAALAGGAQSALAVDGSAAALTLAEAGAKASGCADRF 285

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHI 318
           +  +  + E   A+ +E              +F  +  DPP        +   ++AY  +
Sbjct: 286 QTRQGDAFEVLAALAQE------------GAQFDLVICDPPAFAPSKQALDAGLRAYERV 333

Query: 319 L 319
            
Sbjct: 334 A 334


>gi|77919821|ref|YP_357636.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77545904|gb|ABA89466.1| SAM-dependent methyltransferase [Pelobacter carbinolicus DSM 2380]
          Length = 249

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 21/123 (17%)

Query: 202 VLAATKGIQG--DLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV- 256
           +L A  G QG   + +L CG+G   L+L+R     R++ VEI + S + AR ++  N V 
Sbjct: 38  LLCAFAGFQGVERICDLGCGSGVIPLILSRTSDARRIVGVEIQEESADRARRSVLLNGVQ 97

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGLDDATVGMVQA 314
           + V+IVR   +   + +  E                + +  +PP  R G      G  +A
Sbjct: 98  DRVEIVRRDVRSVREVLAAE--------------SCQVVMTNPPYRRPGTGRLAPGDERA 143

Query: 315 YPH 317
              
Sbjct: 144 RAR 146


>gi|14591412|ref|NP_143492.1| hypothetical protein PH1642 [Pyrococcus horikoshii OT3]
 gi|3258071|dbj|BAA30754.1| 198aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 198

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 17/107 (15%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L+L CG G   +V +R  + V+  +I K +V  AR N+  N+V+N ++   +  E  
Sbjct: 61  WKVLDLGCGYGPIGIVASRFVEYVVMTDINKRAVTIARKNMKLNNVSNGEVRLGNLYE-- 118

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                           +   +F +I  +PP     D    +V   P+
Sbjct: 119 ---------------PVEGEKFNSIITNPPVHAGKDVLREIVINAPN 150


>gi|34763569|ref|ZP_00144504.1| METHYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27886758|gb|EAA23896.1| METHYLTRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 370

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 50/133 (37%), Gaps = 21/133 (15%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR-- 233
            L ++  E             ++E  +   + ++  ++L++  G+G  S+ +A       
Sbjct: 151 GLPFKVSEGVLIP--RADTEILVEQCIQLMREVEEPNILDIGSGSGAISIAIANELKSSS 208

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  ++I + ++E A  N   N + NV  ++                  L +     +++ 
Sbjct: 209 VTGIDINEKAIELANENKTLNKIENVNFIKSD----------------LFEKIDKDFKYD 252

Query: 294 TIFVDPPRSGLDD 306
            I  +PP    ++
Sbjct: 253 LIVSNPPYISKNE 265


>gi|148704565|gb|EDL36512.1| TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae), isoform
           CRA_b [Mus musculus]
          Length = 509

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 21/239 (8%)

Query: 77  MPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
           +  S  ++   +E+     + E +L+A L +   +TS    + V  I H  L D      
Sbjct: 163 LDVSPQLSQYNLELTYENFKSEEILKAVLPEGQDVTS--GFSRVGHIAHLNLRDHQLPFK 220

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--------VAGRTLIYRQIENSF 187
             +   +  +   I              R++  E L         V      Y   E  F
Sbjct: 221 HLIGQVMVDKNPGITSAVNKTSNIDNTYRNFQMEVLCGEENMLTKVRENNYTY---EFDF 277

Query: 188 TQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           ++   N  ++    E          GD+L +++ G G F++  AR    V A ++   S 
Sbjct: 278 SKVYWNPRLST---EHGRITELLNPGDVLFDVFAGVGPFAIPAARKNCTVFANDLNPESH 334

Query: 245 EAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +   +N   N V+  VK+  M  K+F Q   RE    RL            +   P ++
Sbjct: 335 KWLLHNCKLNKVDQKVKVFNMDGKDFIQGPVREELMLRLGLSAEAKPSVHIVMNLPAKA 393


>gi|332798043|ref|YP_004459542.1| methyltransferase small [Tepidanaerobacter sp. Re1]
 gi|332695778|gb|AEE90235.1| methyltransferase small [Tepidanaerobacter sp. Re1]
          Length = 251

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 3/114 (2%)

Query: 208 GIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRM 264
                ++++  G+G  +L+L+       ++ +EI   + + A  N+  N +   VKIV  
Sbjct: 45  DKNDRVIDIGTGSGVIALLLSAKTDAKEIVGIEIVGEAFDRAVRNVKMNRLEERVKIVHG 104

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
             KE  +   RE     + +          I  +P  +         ++    +
Sbjct: 105 DLKEAVKIFGRESFSVVVTNPPYMMINEGKISPNPSIAVARHEVAATLEDVAKV 158


>gi|329113390|ref|ZP_08242171.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter pomorum
           DM001]
 gi|326697215|gb|EGE48875.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter pomorum
           DM001]
          Length = 246

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 24/156 (15%)

Query: 192 AGINVHMLEWV-----LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
             +N   +EW      L   K  +  +L++ CG G  S  LA+    VL ++ +   + A
Sbjct: 38  HAMNGLRIEWASRHLPLRGRKSRKPHVLDIGCGAGLASEALAKAGYNVLGLDASANGIAA 97

Query: 247 ARYNIAAN----HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           A+ ++ AN        +   + S++E      +      L +I  H    +   V     
Sbjct: 98  AQAHLEANPLPAGSGTLHYRQGSAEELVAEHAKFDAVMAL-EIIEHVTDPEAFMVM---- 152

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT 338
                   +V A   I+ +S    ++ R L  L+  
Sbjct: 153 -----LAQLVDANGTII-VS----TMNRTLRSLAVG 178


>gi|302841322|ref|XP_002952206.1| hypothetical protein VOLCADRAFT_81786 [Volvox carteri f.
           nagariensis]
 gi|300262471|gb|EFJ46677.1| hypothetical protein VOLCADRAFT_81786 [Volvox carteri f.
           nagariensis]
          Length = 600

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 18/121 (14%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVK 260
             A  G+   +L+L C +G F L  A     RVL V+ ++P+V+ A  N   N +     
Sbjct: 418 AQAAAGLPVSVLDLCCYSGGFGLAAAAAGATRVLGVDSSEPAVKLATANAELNGLSATAS 477

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            VR    +F +A                  ++  + +DPP+   D + +    A   I Y
Sbjct: 478 FVRADISDFMKAAVA------------QGQQYDVVVLDPPKLAPDRSAL----ARARIKY 521

Query: 321 I 321
           +
Sbjct: 522 L 522


>gi|224005983|ref|XP_002291952.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220972471|gb|EED90803.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 376

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 28/179 (15%)

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD--YVDERLTVAGRTLIYRQIE 184
           +D  WR    RL    +     +  +     + +  +    Y+        +T  Y    
Sbjct: 118 IDIVWRNTPSRLNQDGYELGGDVDEVVDTETSVVATESSIKYLTYPYADGQKTGFYCDQR 177

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL--VLARHFDRVLAVEIAKP 242
           +         N  M+  +       +  +L+L C NG F+L  ++       + V+ ++ 
Sbjct: 178 D---------NRLMVAELCE-----KKRVLDLCCYNGGFALNAMVRGRASSAVGVDSSQD 223

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           +V+AA  N   N +++ K V     +    M+   E N           +  I +DPP+
Sbjct: 224 AVDAATANAELNGLDS-KTVSFLRDDIASYMKTAMEANE---------EYDVIVLDPPK 272


>gi|168215654|ref|ZP_02641279.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           NCTC 8239]
 gi|182382073|gb|EDT79552.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           NCTC 8239]
          Length = 313

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L         + ++  G+G  +LV ++     V+ V++   +V++A+ NI+ 
Sbjct: 163 TTRMCVQALDKYVKADTTVFDIGTGSGILALVASKLGAKHVIGVDLDPVAVDSAKENISF 222

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N+V+N++++  +  +           N + +I
Sbjct: 223 NNVDNIEVLYGNLLDVVDGKADIVVANIIAEI 254


>gi|297193706|ref|ZP_06911104.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151889|gb|EFH31400.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 279

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           AA  G +  +L++ CG G+ + + AR         V++++P +E AR +  A H+ NV  
Sbjct: 42  AAAIGREDAVLDIGCGAGSTTRLAARRVADGHATGVDLSRPMLERARESARAEHLGNVTF 101

Query: 262 VRMSS 266
               +
Sbjct: 102 EHGDA 106


>gi|253574628|ref|ZP_04851968.1| PUA domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845674|gb|EES73682.1| PUA domain-containing protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 457

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 17/142 (11%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
           A +N +  E       G    +LE +   G+F+L   +    +V  ++I++ ++E+A+ N
Sbjct: 238 APVNRNGKEVTFPYWDGAT--VLECFSHTGSFTLHACKYGAKKVTCLDISEHAIESAKRN 295

Query: 251 IAANHV-NNVKIVRMSSKEFTQAMRREREFN-RLKDIDIH-----------SYRFKTIFV 297
           +  N   + V+ V   + ++ ++  +  E   R    D                +  + +
Sbjct: 296 VELNGFTDRVEFVVADAFDYLRSQVKGLEERARRAAQDAKVDTSVPLTAGGGRTWDVVIL 355

Query: 298 DPPRSGLDDATVG-MVQAYPHI 318
           DPP      A V   V+ Y  I
Sbjct: 356 DPPAFAKTKAAVKGAVRGYKDI 377


>gi|238895294|ref|YP_002920029.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238547611|dbj|BAH63962.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 282

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV++   +V  A  N     
Sbjct: 98  LVEQALARLPTAPCRILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAEHLS 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + NV I +                       +   RF TI  +PP
Sbjct: 158 IANVTISQSD-----------------WFSALAGQRFATIVSNPP 185


>gi|297562956|ref|YP_003681930.1| hypothetical protein Ndas_4027 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847404|gb|ADH69424.1| conserved hypothetical protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 428

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           +L CG G   L LA     V  V+    +V  AR NI A  ++ +  VR      T   R
Sbjct: 124 DLCCGVGADLLALAARGVPVEGVDADPLTVAVARANIGALGLSGLARVREGDASATAPGR 183

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPP-------RSGLDDATVGMVQAYPH 317
               F            F      PP        SG   A +      PH
Sbjct: 184 YPLLFCDPARRGGRGRVFDPSAYSPPWDTAVDLASGAQAACLKAAPGVPH 233


>gi|83589437|ref|YP_429446.1| 50S ribosomal protein L11P methyltransferase [Moorella
           thermoacetica ATCC 39073]
 gi|123524952|sp|Q2RKY6|PRMA_MOOTA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|83572351|gb|ABC18903.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Moorella
           thermoacetica ATCC 39073]
          Length = 318

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 62/203 (30%), Gaps = 17/203 (8%)

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           LD        RL           +       TK    +   +E     G T+I      +
Sbjct: 93  LDPGAATVRYRLAREEEWAYGWQKYYHPVRVTKGLTIKPTWEEYTPSPGETVIEIDPGMA 152

Query: 187 F---TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKP 242
           F   T P   +++  LE VL         ++++ CG G  +L  A+     VLA+++   
Sbjct: 153 FGTGTHPTTILSLQALERVLK----PGARVVDVGCGTGILALAAAKMGAGAVLALDLDPV 208

Query: 243 SVEAARYNIAANHVNNVKIVR---------MSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +V  AR NIA N   +   VR                  +  E     + D         
Sbjct: 209 AVAVARKNIARNGAADKVTVRNNDLLAGLEGPFDLVVANILAEVILKMIPDAGRVLPAGG 268

Query: 294 TIFVDPPRSGLDDATVGMVQAYP 316
           T+       G        + A  
Sbjct: 269 TLIASGISRGKAGVVEDALLANG 291


>gi|261346639|ref|ZP_05974283.1| putative methyltransferase [Providencia rustigianii DSM 4541]
 gi|282565345|gb|EFB70880.1| putative methyltransferase [Providencia rustigianii DSM 4541]
          Length = 272

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              LL++ CG G+ SL LA  F+ V+ ++ ++  +E A       ++ N +         
Sbjct: 60  AKTLLDVGCGPGSISLALANQFESVIGIDYSQGMLEMAEIRAKEMNITNARF-------- 111

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            + +  E  ++ L  +DI      T+  D
Sbjct: 112 -EPLAWEDNWDSLPKVDISVASRSTLVDD 139


>gi|254442532|ref|ZP_05056008.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
 gi|198256840|gb|EDY81148.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
          Length = 249

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
              F Q        + E +      + G   L+  CG G  +  L+R F++ + V+I+K 
Sbjct: 35  PEEFYQSGEDCIRGLQERLAQIDISLAGATALDFGCGVGRLTFPLSRRFEKAIGVDISKS 94

Query: 243 SVEAARYNIAANHVNNVKIV 262
            ++AA  N   N   N + +
Sbjct: 95  MIDAANQNA--NRGKNCQFI 112


>gi|115466582|ref|NP_001056890.1| Os06g0162600 [Oryza sativa Japonica Group]
 gi|55296080|dbj|BAD67642.1| putative early nodule-specific-like protein ENOD8 [Oryza sativa
           Japonica Group]
 gi|113594930|dbj|BAF18804.1| Os06g0162600 [Oryza sativa Japonica Group]
 gi|215694922|dbj|BAG90113.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218197644|gb|EEC80071.1| hypothetical protein OsI_21788 [Oryza sativa Indica Group]
          Length = 227

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 24/136 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARY 249
             I   ML     +   I G ++ +  CG G  S+  +    + V+ ++I   S+E A+ 
Sbjct: 30  PHIASRMLYTAENSFDDITGKVVADFGCGCGTLSVASSLLDAEHVVGIDIDPQSLELAQE 89

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
           N A   ++ + +++                  +K++++      T+ ++PP    R G D
Sbjct: 90  NAADLELD-IDLIQCD----------------IKNLNLRGLLVDTVVMNPPFGTSRKGAD 132

Query: 306 DATVGM-VQAYPHILY 320
              + M ++     +Y
Sbjct: 133 MEFISMGMKVATRAVY 148


>gi|284161594|ref|YP_003400217.1| hypothetical protein Arcpr_0478 [Archaeoglobus profundus DSM 5631]
 gi|284011591|gb|ADB57544.1| protein of unknown function Met10 [Archaeoglobus profundus DSM
           5631]
          Length = 277

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN-V 259
           +A        +L ++ G G +++V+A+      V+ VE+   +VE  R N+  N V   V
Sbjct: 114 IARMVKEGERVLVMFAGVGPYAIVIAKLAKPSEVIGVELNPKAVEYFRKNVKLNKVEGIV 173

Query: 260 KIVRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPPRSG 303
           K+     ++    +  E +F+R L      +  F  +  D  + G
Sbjct: 174 KVYEGDVRDVVPKL--EGKFDRILMPAPYSAENFVYLVRDKIKKG 216


>gi|302560459|ref|ZP_07312801.1| UbiE/COQ5 family methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302478077|gb|EFL41170.1| UbiE/COQ5 family methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 284

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           AA       +L++ CG G  +L+ AR      VL V+++ P +E AR +  A  V NV  
Sbjct: 42  AAGIAAGDRVLDVGCGTGQTTLIAARRAYDGSVLGVDLSAPMLERARRDAVAEGVGNVGF 101

Query: 262 VRMSS 266
            +  +
Sbjct: 102 EQGDA 106


>gi|298245425|ref|ZP_06969231.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297552906|gb|EFH86771.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 258

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 199 LEW-VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W V AA       ++++  G G+ +L LA H   V+A++   P +EA R      H+ 
Sbjct: 32  LQWLVEAARLDGSEVVVDVATGTGHTALALAPHAREVVAIDFTAPMLEAGRKLAQERHIA 91

Query: 258 NVKIVRMSS 266
           NV+ +   +
Sbjct: 92  NVRFIEGDA 100


>gi|332528834|ref|ZP_08404808.1| PUA domain-containing protein [Hylemonella gracilis ATCC 19624]
 gi|332041693|gb|EGI78045.1| PUA domain-containing protein [Hylemonella gracilis ATCC 19624]
          Length = 393

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  YC  G F++  L      V +++ + P++  AR N+A N ++  +   + + +  
Sbjct: 220 KVLNCYCYTGGFTVAALTGGAAHVTSIDSSGPALTQARANVALNGLDQQRCEFLDA-DVN 278

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            ++RR  +  R         RF  I +DPP+  
Sbjct: 279 ASLRRFADEGR---------RFDAIILDPPKFA 302


>gi|238854674|ref|ZP_04645004.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           269-3]
 gi|260664383|ref|ZP_05865235.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           SJ-7A-US]
 gi|282932935|ref|ZP_06338332.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           208-1]
 gi|238832464|gb|EEQ24771.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           269-3]
 gi|260561448|gb|EEX27420.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           SJ-7A-US]
 gi|281302970|gb|EFA95175.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           208-1]
          Length = 314

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 91/236 (38%), Gaps = 25/236 (10%)

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            I+        I A   +      L    ++KL +++     + +  ++  Y +  D+ W
Sbjct: 55  DIENLPEDMEFI-AYFDQERDPDDLIKQYKSKLAELESYGLDTGKKEISYDYVQ--DEDW 111

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
            +   +    L+  ++   +    N        ++ D+++      L +    ++ TQ  
Sbjct: 112 NKVWQKYYHVLNFSRHLAIVPEWEN-----YQPEFPDQKVITLDPGLAFGTGGHTTTQ-- 164

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
                 ++   L  +      +L++  G+G  ++  ++     VLA +I+  +V AA  N
Sbjct: 165 ------LVMMALERSLTKPVKVLDVGTGSGILAIAASKLGAKSVLATDISDEAVTAANEN 218

Query: 251 IAANHVNNVKIVRMSSKE--------FTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           IA N +NN+++++ +  +            +  E  F+ + D+D H      +   
Sbjct: 219 IALNKLNNIEVIKANLLKDVDGKFDLILANILAEILFDLIPDLDKHLAPNGKVIFS 274


>gi|148704564|gb|EDL36511.1| TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae), isoform
           CRA_a [Mus musculus]
          Length = 449

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 21/239 (8%)

Query: 77  MPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
           +  S  ++   +E+     + E +L+A L +   +TS    + V  I H  L D      
Sbjct: 103 LDVSPQLSQYNLELTYENFKSEEILKAVLPEGQDVTS--GFSRVGHIAHLNLRDHQLPFK 160

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--------VAGRTLIYRQIENSF 187
             +   +  +   I              R++  E L         V      Y   E  F
Sbjct: 161 HLIGQVMVDKNPGITSAVNKTSNIDNTYRNFQMEVLCGEENMLTKVRENNYTY---EFDF 217

Query: 188 TQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           ++   N  ++    E          GD+L +++ G G F++  AR    V A ++   S 
Sbjct: 218 SKVYWNPRLST---EHGRITELLNPGDVLFDVFAGVGPFAIPAARKNCTVFANDLNPESH 274

Query: 245 EAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +   +N   N V+  VK+  M  K+F Q   RE    RL            +   P ++
Sbjct: 275 KWLLHNCKLNKVDQKVKVFNMDGKDFIQGPVREELMLRLGLSAEAKPSVHIVMNLPAKA 333


>gi|268324410|emb|CBH37998.1| putative SAM dependent methyltransferase [uncultured archaeon]
          Length = 263

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 33/66 (50%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++  G G F++ LA+    V  VE +K   +    +   N +NN++++    ++ ++
Sbjct: 62  TVLDVGAGTGAFAIPLAKKVSAVTVVEPSKEMAQYLMKSADRNGLNNIEVITKRWEDISR 121

Query: 272 AMRRER 277
              RE 
Sbjct: 122 DDLREY 127


>gi|224051859|ref|XP_002200401.1| PREDICTED: TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae)
           [Taeniopygia guttata]
          Length = 554

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/252 (21%), Positives = 93/252 (36%), Gaps = 28/252 (11%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
               + E +LRA L +   +TS    + V  I H  L D        +   +  +   + 
Sbjct: 173 YENFKTEEILRAVLPEGQEVTS--GFSRVGHIAHLNLRDHQLPYRHLIGQVIMDKNPGVT 230

Query: 151 LIGRANKTKIC--LDRDYVDERLTVAGRTLIYRQIEN------SFTQP--NAGINVHMLE 200
            +   NKT I     R++  E L      L+ +  EN       F++   N  ++    E
Sbjct: 231 CVV--NKTNIIDSTYRNFEMEVL-AGENNLVTKVKENNIAYELDFSKVYWNPRLST---E 284

Query: 201 WVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
                     GD+L +++ G G F++  A+   RV A ++   S     +N   N V+  
Sbjct: 285 HGRIVELLRAGDVLFDVFAGIGPFAIPAAKRRCRVFANDLNPESYTWLLHNCRLNKVDTK 344

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYP 316
           VK   M  ++F +   RE     L  +         I ++ P   ++  D    ++   P
Sbjct: 345 VKAFNMDGRDFLRGPVREELSRELPLLREEQKTAFHIVMNLPALAVEFLDVFRHLLVGEP 404

Query: 317 HILYISCNPDSL 328
                 C+P  L
Sbjct: 405 ------CSPAGL 410


>gi|149923651|ref|ZP_01912047.1| hypothetical protein PPSIR1_16920 [Plesiocystis pacifica SIR-1]
 gi|149815466|gb|EDM75003.1| hypothetical protein PPSIR1_16920 [Plesiocystis pacifica SIR-1]
          Length = 286

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 22/138 (15%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +   M  W  A        +++  CG G  ++  AR    V+AVE     +  AR+N   
Sbjct: 99  LAKRMARWAAAQGVEA---VIDAGCGAGGNAIAFARAGLEVVAVEADAGRLAMARHNAGI 155

Query: 254 NHVNNV-KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA----- 307
             V +  ++V   +      +  E    R             +F DPP  G D       
Sbjct: 156 YGVADALRLVHGDAVADLPTLLDELGPAR-----------TLVFFDPPWGGDDSKQRTEV 204

Query: 308 --TVGMVQAYPHILYISC 323
                +  A P +  + C
Sbjct: 205 GDFPLLAAALPRVRALGC 222


>gi|254705330|ref|ZP_05167158.1| hypothetical protein Bsuib36_15698 [Brucella suis bv. 3 str. 686]
          Length = 385

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 27/188 (14%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYC 218
           +DE   +    + +     SF           H      ++   +    G    +L L+ 
Sbjct: 161 LDETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFG 218

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRE 276
             G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R 
Sbjct: 219 YTGVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREERR 278

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSI 334
             F            +  I +DPP  G         + +  P ++  +C      + L++
Sbjct: 279 GSF------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAV 325

Query: 335 LSTTHTIE 342
           + T ++I 
Sbjct: 326 ILTAYSIR 333


>gi|159795650|pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
           Decarboxylase (Cbit)
 gi|159795651|pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
           Decarboxylase (Cbit)
          Length = 183

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 37/67 (55%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++ CG+G  ++ +A+    V A++    ++E  + N+A  ++ N +I++  +++    
Sbjct: 39  VVDVGCGSGGXTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK 98

Query: 273 MRREREF 279
           +   + F
Sbjct: 99  LEFNKAF 105


>gi|23501062|ref|NP_697189.1| SAM dependent methyltransferase [Brucella suis 1330]
 gi|161618139|ref|YP_001592026.1| hypothetical protein BCAN_A0156 [Brucella canis ATCC 23365]
 gi|260567211|ref|ZP_05837681.1| SAM dependent methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261756041|ref|ZP_05999750.1| SAM dependent methyltransferase [Brucella suis bv. 3 str. 686]
 gi|23346929|gb|AAN29104.1| SAM dependent methyltransferase, putative [Brucella suis 1330]
 gi|161334950|gb|ABX61255.1| Hypothetical protein BCAN_A0156 [Brucella canis ATCC 23365]
 gi|260156729|gb|EEW91809.1| SAM dependent methyltransferase [Brucella suis bv. 4 str. 40]
 gi|261745794|gb|EEY33720.1| SAM dependent methyltransferase [Brucella suis bv. 3 str. 686]
          Length = 381

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 68/188 (36%), Gaps = 27/188 (14%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYC 218
           +DE   +    + +     SF           H      ++   +    G    +L L+ 
Sbjct: 157 LDETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFG 214

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRE 276
             G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R 
Sbjct: 215 YTGVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREERR 274

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSI 334
             F            +  I +DPP  G         + +  P ++  +C      + L++
Sbjct: 275 GSF------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAV 321

Query: 335 LSTTHTIE 342
           + T ++I 
Sbjct: 322 ILTAYSIR 329


>gi|301754483|ref|XP_002913077.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Ailuropoda
           melanoleuca]
          Length = 438

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 95/255 (37%), Gaps = 27/255 (10%)

Query: 79  GSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA-- 135
            +  I+   +E+     + E +L+A L +   +TS    + V  I H  L D        
Sbjct: 105 VNPQISKYNLELTYENFKSEEILKAVLPEGQDVTS--GFSRVGHIAHLNLRDHQLPFKHL 162

Query: 136 --IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS------F 187
               + D        +  I   + T     R++  E L+     +  +  ENS      F
Sbjct: 163 IGQVMIDKNPGITSAVNKINNIDNT----YRNFQMEVLSGEENMMT-KVRENSYAYEFDF 217

Query: 188 TQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           ++   N  ++    E          GD+L +++ G G F++ +A+    V A ++   S 
Sbjct: 218 SKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAIPVAKKNCTVFANDLNPESH 274

Query: 245 EAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +   +N   N V+  VK+  +  K+F Q   R+    +L  +         I ++ P   
Sbjct: 275 KWLLHNCKLNKVDQKVKVFNLDGKDFLQGPVRKELMQQLGPLSKERKHSVHIVMNLPAKA 334

Query: 304 LD--DATVGMVQAYP 316
           ++       ++   P
Sbjct: 335 IEFLSVFKSLLDGPP 349


>gi|297623053|ref|YP_003704487.1| hypothetical protein Trad_0810 [Truepera radiovictrix DSM 17093]
 gi|297164233|gb|ADI13944.1| Protein of unknown function methylase putative [Truepera
           radiovictrix DSM 17093]
          Length = 174

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 20/124 (16%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           ++G  L+LY G+G   L  A      + VE+++ +    R N  A  ++ V++V+  +  
Sbjct: 42  VRGRFLDLYSGSGAVGLEAASRGFEAVCVELSRGAAAVIRKNARALDLD-VQVVQGDALA 100

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS-GLDDATVGMVQAYPHI---LYISCN 324
           F +A               H   F+ +F  PP    L +    +++A P     LY+  +
Sbjct: 101 FARA---------------HPGAFEVVFAAPPYPLELREVFAAILEARPCKAGGLYVFQH 145

Query: 325 PDSL 328
           P  L
Sbjct: 146 PAEL 149


>gi|196009009|ref|XP_002114370.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens]
 gi|190583389|gb|EDV23460.1| hypothetical protein TRIADDRAFT_58107 [Trichoplax adhaerens]
          Length = 725

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G   +  A+  D V+A++I    ++ AR+N    +V + ++ +     +   
Sbjct: 565 IIDAFCGVGGNCIQFAKTCDHVIAIDIDPNKIKCARHNAKIYNVEHKIEFIVGDFLQLAP 624

Query: 272 AMRREREFNRLKDIDIHSYRFKTI 295
           +++ +  F           +  T 
Sbjct: 625 SLKADVVFLSPPWGGPTYLKADTF 648


>gi|225156151|ref|ZP_03724632.1| putative SAM-dependent methyltransferase [Opitutaceae bacterium
           TAV2]
 gi|224803129|gb|EEG21371.1| putative SAM-dependent methyltransferase [Opitutaceae bacterium
           TAV2]
          Length = 446

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 21/140 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN 258
           +    A       +L+ +C  G F+L  AR     VL ++ A+ ++  AR N+  NH+  
Sbjct: 232 QHAAVAKYCEGKRVLDAFCNQGPFALHAARAGATEVLGLDSAEDAIAQARRNVERNHLAA 291

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR-------------------FKTIFVDP 299
              VR                +        S                     +  I +DP
Sbjct: 292 DGRVRFEVANVFDWFNANSASSMRPSPPPPSPARSTTAPASAATAATATAGLWDVIVLDP 351

Query: 300 PRSGLDDATV-GMVQAYPHI 318
           P      + + G ++ Y  I
Sbjct: 352 PPFAKSKSALPGALRGYKEI 371


>gi|157823371|ref|NP_001102183.1| tRNA (guanine-N(1)-)-methyltransferase [Rattus norvegicus]
 gi|149051437|gb|EDM03610.1| TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) (predicted),
           isoform CRA_a [Rattus norvegicus]
          Length = 449

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 86/264 (32%), Gaps = 32/264 (12%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
               + E +LRA L +   +TS    + V  I H  L D        +   +  +   I 
Sbjct: 118 YENFKSEEILRAVLPEGQDVTS--GFSRVGHIAHLNLRDHQLPFKHLIGQVMVDKNPGIT 175

Query: 151 LIGRANKTKICLDRDYVDERLT--------VAGRTLIYRQIENSFTQP--NAGINVHMLE 200
                        R++  E L         V      Y   E  F++   N  ++    E
Sbjct: 176 SAVNKTSNIDNTYRNFQMEVLCGEENMLTKVRENNYTY---EFDFSKVYWNPRLST---E 229

Query: 201 WVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
                     GD+L +++ G G F++  AR    V A ++   S     +N   N V+  
Sbjct: 230 HGRITELLNPGDVLFDVFAGVGPFAIPAARKNCTVFANDLNPESHRWLLHNCKLNKVDQK 289

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP- 316
           VK+  M  K+F Q   RE    RL            +   P ++         ++   P 
Sbjct: 290 VKVFNMDGKDFLQGPVREELMLRLGLSTEGKPSLHIVMNLPAKAIEFLSVFRSLLDGQPC 349

Query: 317 -----HILYISC-----NPDSLCR 330
                 I++  C     +P    R
Sbjct: 350 STERLPIVHCYCFSKDSDPAKDAR 373


>gi|18311009|ref|NP_562943.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           str. 13]
 gi|110801769|ref|YP_699308.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           SM101]
 gi|168204734|ref|ZP_02630739.1| ribosomal protein L11 methyltransferase [Clostridium perfringens E
           str. JGS1987]
 gi|168208729|ref|ZP_02634354.1| ribosomal protein L11 methyltransferase [Clostridium perfringens B
           str. ATCC 3626]
 gi|168212936|ref|ZP_02638561.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           CPE str. F4969]
 gi|169343726|ref|ZP_02864725.1| ribosomal protein L11 methyltransferase [Clostridium perfringens C
           str. JGS1495]
 gi|182626897|ref|ZP_02954631.1| ribosomal protein L11 methyltransferase [Clostridium perfringens D
           str. JGS1721]
 gi|38605393|sp|Q8XIT6|PRMA_CLOPE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|123145978|sp|Q0SRE9|PRMA_CLOPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|18145691|dbj|BAB81733.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           str. 13]
 gi|110682270|gb|ABG85640.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           SM101]
 gi|169298286|gb|EDS80376.1| ribosomal protein L11 methyltransferase [Clostridium perfringens C
           str. JGS1495]
 gi|170663557|gb|EDT16240.1| ribosomal protein L11 methyltransferase [Clostridium perfringens E
           str. JGS1987]
 gi|170713216|gb|EDT25398.1| ribosomal protein L11 methyltransferase [Clostridium perfringens B
           str. ATCC 3626]
 gi|170715644|gb|EDT27826.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           CPE str. F4969]
 gi|177907747|gb|EDT70359.1| ribosomal protein L11 methyltransferase [Clostridium perfringens D
           str. JGS1721]
          Length = 313

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L         + ++  G+G  +LV ++     V+ V++   +V++A+ NI+ 
Sbjct: 163 TTRMCVQALDKYVKADTTVFDIGTGSGILALVASKLGAKHVVGVDLDPVAVDSAKENISF 222

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N+V+N++++  +  +           N + +I
Sbjct: 223 NNVDNIEVLYGNLLDVVDGKADIVVANIIAEI 254


>gi|330508817|ref|YP_004385245.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328929625|gb|AEB69427.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 198

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 63/184 (34%), Gaps = 28/184 (15%)

Query: 182 QIENSFT--Q--PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
             E SF   Q    A +   +L   LAA +   G + +L CG G  ++  A    R + V
Sbjct: 16  FSEPSFIREQYATPASVAAEIL--FLAALRNDLGTVCDLGCGTGVLAIGAALMGARAVGV 73

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           EI K ++  AR N     V +V  +R   ++           N        S   +    
Sbjct: 74  EIDKDALATARKNAENLGV-HVDFIRADVRKLELEGIDTVIMNPPFGAQKASEGDRAFLS 132

Query: 298 DPPR----------SGLDDATVGMVQAYPHIL-YISCNPDSLCR-------DLSILS-TT 338
              R           G  D     +  +P+++  + C P  L R       D+ ++    
Sbjct: 133 TAQRIARNIYTLHNRGSHDFIKKYI--FPNVVQEVYCIPFPLKRCFEFHSKDIKVIEVEL 190

Query: 339 HTIE 342
           + I 
Sbjct: 191 YRIT 194


>gi|302549517|ref|ZP_07301859.1| methyltransferase type 11 [Streptomyces viridochromogenes DSM
           40736]
 gi|302467135|gb|EFL30228.1| methyltransferase type 11 [Streptomyces viridochromogenes DSM
           40736]
          Length = 288

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V A      G +L++ CG G  +  +AR     + V+I+ P +EAAR       V     
Sbjct: 47  VEAMASERAGRVLDVGCGTGGITRAVARRVGPCVGVDISGPMIEAARAWAEREGVP-ASF 105

Query: 262 VRMSSKE 268
           VR  ++E
Sbjct: 106 VRADAQE 112


>gi|256845603|ref|ZP_05551061.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Fusobacterium sp. 3_1_36A2]
 gi|256719162|gb|EEU32717.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Fusobacterium sp. 3_1_36A2]
          Length = 383

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 50/133 (37%), Gaps = 21/133 (15%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR-- 233
            L ++  E             ++E  +   + ++  ++L++  G+G  S+ +A       
Sbjct: 164 GLPFKVSEGVLIP--RADTEILVEQCIQLMREVEEPNILDIGSGSGAISIAIANELKSSS 221

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  ++I + ++E A  N   N + NV  ++                  L +     +++ 
Sbjct: 222 VTGIDINEKAIELANENKTLNKIENVNFIKSD----------------LFEKIDKDFKYD 265

Query: 294 TIFVDPPRSGLDD 306
            I  +PP    ++
Sbjct: 266 LIVSNPPYISKNE 278


>gi|239979273|ref|ZP_04701797.1| methyltransferas [Streptomyces albus J1074]
 gi|291451152|ref|ZP_06590542.1| methyltransferase [Streptomyces albus J1074]
 gi|291354101|gb|EFE81003.1| methyltransferase [Streptomyces albus J1074]
          Length = 224

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 18/106 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +   V A   G   ++L+L  G G  +L  AR   RV AV+I+  +V  AR N A  
Sbjct: 25  TALLTRAVTAEQPGPGTEVLDLGTGTGAVALHAARTGARVTAVDISWTAVLTARLNAARA 84

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +++ R                       +    F  +  +PP
Sbjct: 85  RCR-LRVHRGDLT-----------------APVTGRTFDLVVSNPP 112


>gi|312963653|ref|ZP_07778134.1| SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
 gi|311282162|gb|EFQ60762.1| SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
          Length = 398

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 27/139 (19%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A       +L+LY   G + +   A     V  V+ +  +++    N A N V   
Sbjct: 212 RARLAPYAKGKRVLDLYSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGV--- 268

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------------L 304
                 +++ T        F  LK++     RF  I  DPP                  L
Sbjct: 269 ------AEKMT--CIEGDVFEALKELKASEERFDVIVADPPAFIKRKKDMKNGEGAYRRL 320

Query: 305 DDATVGMVQAYPHILYISC 323
           ++  + ++     ++  SC
Sbjct: 321 NEQAMRLLSKDGILVSASC 339


>gi|229593165|ref|YP_002875284.1| hypothetical protein PFLU5795 [Pseudomonas fluorescens SBW25]
 gi|229365031|emb|CAY53198.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 398

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 27/139 (19%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A       +L+LY   G + +   A     V  V+ +  +++    N A N V   
Sbjct: 212 RARLAPYAKGKRVLDLYSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGV--- 268

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------------L 304
                 +++ T        F  LK++     RF  I  DPP                  L
Sbjct: 269 ------AEKMT--CIEGDVFEALKELKASEERFDVIVADPPAFIKRKKDMKNGEGAYRRL 320

Query: 305 DDATVGMVQAYPHILYISC 323
           ++  + ++     ++  SC
Sbjct: 321 NEQAMRLLSKDGILVSASC 339


>gi|57641208|ref|YP_183686.1| SAM-dependent methyltransferase [Thermococcus kodakarensis KOD1]
 gi|57159532|dbj|BAD85462.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus
           kodakarensis KOD1]
          Length = 249

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L+L CG G  +L LA     VL +++ +  +  AR    A  + NVK +R ++ + +
Sbjct: 43  KRVLDLACGTGIPTLELAERGYEVLGLDLHEEMLRVARRKAEARGL-NVKFIRGNALDIS 101


>gi|330899754|gb|EGH31173.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 277

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFASAQVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +NN ++                 F       +   +F  I  +PP
Sbjct: 154 QRLQLNNAEV-----------------FESHWFGGLQGRQFDLIISNPP 185


>gi|226326408|ref|ZP_03801926.1| hypothetical protein PROPEN_00256 [Proteus penneri ATCC 35198]
 gi|225205191|gb|EEG87545.1| hypothetical protein PROPEN_00256 [Proteus penneri ATCC 35198]
          Length = 219

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            LL++ CG G+ S+ +A  F +++ ++ +   +  A+       +N+ + +  S      
Sbjct: 8   TLLDVGCGPGSISIHVADKFKKIIGIDYSTGMLAVAKRRAEQAGINHAEFITCS------ 61

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
               E  ++ L   DI      T+ +D     L  A + + +     +Y
Sbjct: 62  ---WEDSWDELPRCDIAVASRSTLVMD-----LKAALIKLNRQAKLRVY 102


>gi|15891269|ref|NP_356941.1| putative siderophore biosynthesis protein [Agrobacterium
           tumefaciens str. C58]
 gi|15159640|gb|AAK89726.1| putative siderophore biosynthesis protein [Agrobacterium
           tumefaciens str. C58]
          Length = 298

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +   +  L   + +       +L+L CG G+ + ++A     V  ++ ++  +  AR N 
Sbjct: 28  SEQKIAPLARAVLSQLPNGASVLDLCCGTGHLAKLMADRGYAVTGLDGSQDMINHARGNA 87

Query: 252 AANHVNNVKIVRMSSKEFT 270
                 +++ V   +++FT
Sbjct: 88  -----PDLEFVLGDARDFT 101


>gi|134098593|ref|YP_001104254.1| methyltransferase type 11 [Saccharopolyspora erythraea NRRL 2338]
 gi|291008210|ref|ZP_06566183.1| methyltransferase type 11 [Saccharopolyspora erythraea NRRL 2338]
 gi|133911216|emb|CAM01329.1| methyltransferase type 11 [Saccharopolyspora erythraea NRRL 2338]
          Length = 209

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L  T  I+G +L+   G G  ++ LA     VL V+ +  +VE AR N  A  V   +  
Sbjct: 33  LERTGAIRGAVLDAGTGAGEHTIHLAELGYDVLGVDFSPFAVEQARANARARGVE-ARFE 91

Query: 263 RMSS 266
              +
Sbjct: 92  VADA 95


>gi|71909296|ref|YP_286883.1| modification methylase HemK [Dechloromonas aromatica RCB]
 gi|71848917|gb|AAZ48413.1| [protein release factor]-glutamine N5-methyltransferase
           [Dechloromonas aromatica RCB]
          Length = 270

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 31/149 (20%)

Query: 176 RTLIYRQIENSF----TQPNAGI------NVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
             L Y   E  F     Q +  +         ++E  LA   G+    +++L  G+G  +
Sbjct: 61  EPLAYLVGEAEFRGRVFQVSPAVLIPRPETEVLIELALAKLPGLAAPKVVDLGTGSGIVA 120

Query: 225 LVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           + LA       V+AV+++  ++  AR N        +   +                   
Sbjct: 121 ISLALESPAATVVAVDLSAEAISVARNNAGRLGAR-IDFRQGD----------------- 162

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +   RF  I  +PP     D  + +
Sbjct: 163 WFSPLAGERFDLIVSNPPYVADGDPHLAL 191


>gi|15790327|ref|NP_280151.1| hypothetical protein VNG1280C [Halobacterium sp. NRC-1]
 gi|169236060|ref|YP_001689260.1| hypothetical protein OE2833R [Halobacterium salinarum R1]
 gi|10580801|gb|AAG19631.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167727126|emb|CAP13912.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 200

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 5/110 (4%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A  G    +L+L CG G  +L LA    RV+  +I+   +  AR       V+NV     
Sbjct: 38  ADVGGADTVLDLGCGTGAIALGLAADAGRVVGRDISDGMLTQAREKATTRGVDNVAFDTG 97

Query: 265 SSKE-----FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
             +E         +      + L D +  S       ++P R  L D  +
Sbjct: 98  RFREPNYDGDADVVVSNFAMHHLSDAEKRSAIDTIAGLNPHRIVLGDVML 147


>gi|323447702|gb|EGB03614.1| hypothetical protein AURANDRAFT_59615 [Aureococcus anophagefferens]
          Length = 223

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 19/137 (13%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +A     +LEW  A  +     L +L CG G+ ++ +A+   +V A +I+   V  A   
Sbjct: 44  HAETVAKVLEWADAEGR----TLCDLGCGCGDLAIPMAKKGAKVEASDISAAMVSEATER 99

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            AA  V          +    A                +     + +  P   +      
Sbjct: 100 AAAAGVT-ASFETSDMENVNGAY--------------DTVSCIDVMIHYPTDKMVGLVDK 144

Query: 311 MVQAYPHILYISCNPDS 327
           +       +Y+S  P +
Sbjct: 145 LASLSTDTIYVSFAPKT 161


>gi|293407667|gb|ADE44321.1| putative glycosyl transferase [Burkholderia pseudomallei]
          Length = 594

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            HM  +++A        +L++ CG G  S  L++    V+ V+I++ +V  A        
Sbjct: 48  EHMHRYLVARKLAAGMRVLDIACGEGYGSFALSQTAASVVGVDISEEAVRHAVA-AYGQR 106

Query: 256 VNNVKIVRMSSKEF 269
            +N++ V  S+ + 
Sbjct: 107 ADNLEFVVGSAADI 120


>gi|294670647|ref|ZP_06735523.1| hypothetical protein NEIELOOT_02370 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307617|gb|EFE48860.1| hypothetical protein NEIELOOT_02370 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 271

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 18/119 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
             H++E  L      QG + +L  G+G  ++ LA  R    VLA +I+  ++  AR N A
Sbjct: 88  TEHLVEAALQ-HLPPQGLVWDLGTGSGAVAVTLACERPDASVLASDISPAALAVARQNAA 146

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            N  + V     S  +               D     + F  +  +PP    DD  +  
Sbjct: 147 DNGAD-VSFACGSWFDI--------------DRPSEKHGFDLLVSNPPYIEADDGHLQQ 190


>gi|261400801|ref|ZP_05986926.1| protein-(glutamine-N5) methyltransferase [Neisseria lactamica ATCC
           23970]
 gi|269209402|gb|EEZ75857.1| protein-(glutamine-N5) methyltransferase [Neisseria lactamica ATCC
           23970]
          Length = 273

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGTVAVTVALERPDAFVRASDISPPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
                G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|222622281|gb|EEE56413.1| hypothetical protein OsJ_05572 [Oryza sativa Japonica Group]
          Length = 387

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 210 QGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSS 266
              +L+L C +G F+L  A+   + V+ ++ +  +++ A  NI  N ++   +  V+  +
Sbjct: 211 DQRVLDLCCYSGGFALNAAKGGANNVIGIDSSASALDLANKNIILNKLDTQRISFVKEDA 270

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             F +      E             +  + +DPP+       +      
Sbjct: 271 TAFMKGAISRNE------------VWDLVILDPPKLAPRKKVLQSASGM 307


>gi|115444525|ref|NP_001046042.1| Os02g0173700 [Oryza sativa Japonica Group]
 gi|49388970|dbj|BAD26187.1| SAM-dependent methyltransferase-like [Oryza sativa Japonica Group]
 gi|113535573|dbj|BAF07956.1| Os02g0173700 [Oryza sativa Japonica Group]
          Length = 346

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 210 QGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSS 266
              +L+L C +G F+L  A+   + V+ ++ +  +++ A  NI  N ++   +  V+  +
Sbjct: 170 DQRVLDLCCYSGGFALNAAKGGANNVIGIDSSASALDLANKNIILNKLDTQRISFVKEDA 229

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             F +      E             +  + +DPP+       +      
Sbjct: 230 TAFMKGAISRNE------------VWDLVILDPPKLAPRKKVLQSASGM 266


>gi|332140930|ref|YP_004426668.1| peptide release factor-glutamine N5-methyltransferase(HemK)
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550952|gb|AEA97670.1| peptide release factor-glutamine N5-methyltransferase(HemK)
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 285

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 33/149 (22%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN-VHMLEWVLAATKGIQGD-----L 213
           I   RD+    L  +  TLI R        P+  +   H++ W          +     +
Sbjct: 71  IIGKRDFWTLSLFTSSHTLIPR--------PDTEVLVEHVINWATGNVSANTPNKPPLSI 122

Query: 214 LELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L  G G  +L LA       V+ V+    +V  A+ N  +N +NN + ++        
Sbjct: 123 CDLGTGTGAIALALASELPQASVIGVDFLSDAVALAKRNANSNKINNARFMQSD------ 176

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                          +  + F  I  +PP
Sbjct: 177 -----------WFSALRGHTFDIIVSNPP 194


>gi|94985722|ref|YP_605086.1| rRNA (guanine-N(2)-)-methyltransferase [Deinococcus geothermalis
           DSM 11300]
 gi|94556003|gb|ABF45917.1| 16S rRNA m(2)G 1207 methyltransferase [Deinococcus geothermalis DSM
           11300]
          Length = 407

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 23/124 (18%)

Query: 199 LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LE +      + G  +L+L CG G      AR   +V  V+    SV +A+  +AAN ++
Sbjct: 256 LEALDLTELDLTGKRVLDLGCGTGLMGAWAARRGAQVTLVDGDLQSVRSAQATLAANGLS 315

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGMVQ 313
               +                     D  +    F  I  +PP    R  + D     + 
Sbjct: 316 GDVFLSD------------------VDAALGERTFDVILTNPPFHVGRGVVLDVAREFIA 357

Query: 314 AYPH 317
           A   
Sbjct: 358 AAGR 361


>gi|332031558|gb|EGI71030.1| Trimethylguanosine synthase [Acromyrmex echinatior]
          Length = 1035

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
             +++ +CG G+ ++  A   +RV+A++I    ++ AR+N     V++ ++ +     + 
Sbjct: 878 DTIIDAFCGAGSNAIQFAFTCERVIAIDIDPDKIKIARHNAGIYGVDDRIEFITGDFLQL 937

Query: 270 TQAMRREREF--NRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
              +  +  F        D I    F    + PP  G         +   H+ Y
Sbjct: 938 APQLVADVVFLSPPWGGPDYIKRKVFDLESIMPP-IGGRSIFEAARRITQHVAY 990


>gi|322815425|gb|EFZ24082.1| hypothetical protein TCSYLVIO_9800 [Trypanosoma cruzi]
          Length = 420

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G   + +A H     V+AV++ + +V+ +  N   N + +V   R    + 
Sbjct: 211 RVLDMCCGTGCVGIAIAVHLPHTEVVAVDVMEEAVKVSEENARRNGI-HVSRYRAIKSDM 269

Query: 270 TQAMRRER-------------EFNRLKDIDIHSYRFKTIFVDPP 300
            +A                  E  + +  D+H   F  I  +PP
Sbjct: 270 FEAFVELDDTSSRGKSKEGMSENKKAQIADLHVGSFDIIVSNPP 313


>gi|290475216|ref|YP_003468102.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Xenorhabdus bovienii SS-2004]
 gi|289174535|emb|CBJ81329.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Xenorhabdus bovienii SS-2004]
          Length = 286

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 23/109 (21%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAAN- 254
           ++E  L         +L+L  G G  +L LA  R+   V  V+I   +V  A+YN   N 
Sbjct: 98  LVEKALELLPDSPARILDLGTGTGAIALALASERNDCYVTGVDINSDAVMLAQYNAEKNA 157

Query: 255 ---HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++NV  ++  S+ F     +               +F  I  +PP
Sbjct: 158 GKLAIHNVNFLQ--SEWFAAVGNQ---------------QFDMIVSNPP 189


>gi|291612729|ref|YP_003522886.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Sideroxydans lithotrophicus ES-1]
 gi|291582841|gb|ADE10499.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Sideroxydans lithotrophicus ES-1]
          Length = 286

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV-AGRTLIYRQIE 184
           LL +A +     L           Q    AN  +  L  + V   L       L ++   
Sbjct: 33  LLQNALKVPRSYLLAHPEQVLDATQQASYANLLQRRLQGEPVAHILGEREFFGLNFKVTP 92

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAK 241
            +   P       ++E  L          +L++  G+G  +L +A  R    V+AV+ + 
Sbjct: 93  ATLI-PRPE-TELLVELALQRIPAHGHFRVLDMGTGSGAIALSIAHARPEAEVVAVDASG 150

Query: 242 PSVEAARYNIAANHVNNVKIVRMS 265
            ++E AR N     + N   +R  
Sbjct: 151 AALEVARENAVRLGIRNATFIRSD 174


>gi|221234183|ref|YP_002516619.1| methyltransferase [Caulobacter crescentus NA1000]
 gi|220963355|gb|ACL94711.1| methyltransferase [Caulobacter crescentus NA1000]
          Length = 303

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-- 258
             L A  G Q  +L L+   G  SLV A     V  V+ +K SV  AR N A   + +  
Sbjct: 122 RALCAGSGPQPKVLNLFGYTGVASLVCAAAGAAVTHVDASKKSVGFARENAAFAGLADKP 181

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           ++ +   +++F     R                +  I +DPP+ G   
Sbjct: 182 IRWIVEDARKFVAREVR------------RGNTYDGIILDPPKFGRGA 217


>gi|297618670|ref|YP_003706775.1| hypothetical protein Mvol_0142 [Methanococcus voltae A3]
 gi|297377647|gb|ADI35802.1| protein of unknown function Met10 [Methanococcus voltae A3]
          Length = 411

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 42/100 (42%), Gaps = 14/100 (14%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI- 261
           L         +L++    G F++        + +V++++ ++E A+ N+  N + + K  
Sbjct: 230 LENYVKKDDKVLDICSYTGGFAVHAGIKGAEITSVDMSEKALEFAKENMELNGIGSDKYN 289

Query: 262 -VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +   +            F+ +K++     +F  + +DPP
Sbjct: 290 GICGDA------------FSIMKEMINRGEKFDVVILDPP 317


>gi|148657852|ref|YP_001278057.1| methyltransferase small [Roseiflexus sp. RS-1]
 gi|148569962|gb|ABQ92107.1| methyltransferase small [Roseiflexus sp. RS-1]
          Length = 198

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 2/95 (2%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                 +L+L CG G   +VLAR F   RV+  +    +V  AR+N A N   NV+++  
Sbjct: 52  PDSPQTILDLGCGCGVIGIVLARWFPQARVILADRDLLAVRYARHNAALNQTPNVEVIGS 111

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              E   A+  +   + +          +   +DP
Sbjct: 112 VGFEHIPALPFDLIVSNIPAKIGDEAIEREFILDP 146


>gi|330975578|gb|EGH75644.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 277

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAQVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +NN ++                 F       +   +F  I  +PP
Sbjct: 154 QRLQLNNAEV-----------------FESHWFGGLQGRQFDLIISNPP 185


>gi|302669959|ref|YP_003829919.1| hypothetical protein bpr_I0592 [Butyrivibrio proteoclasticus B316]
 gi|302394432|gb|ADL33337.1| hypothetical protein bpr_I0592 [Butyrivibrio proteoclasticus B316]
          Length = 288

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEW--VLAATKGIQGDLLELYCGNGN 222
           + E  T+  + L +     SF           +  +W   L         +L L+   G 
Sbjct: 69  LPEEWTINYKGLTFNLKPFSFKHTGLFPEQATNW-DWFSSLIKEANSPIKVLNLFAYTGG 127

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV--KIVRMSSKEFTQAMRREREFN 280
            ++  A+    V  V+ +K  V  A+ N A++ +++   + +     +F +   R     
Sbjct: 128 ATVSAAKAGASVTHVDASKGMVGWAKENAASSGLSDAPIRYLVDDCVKFVEREIR----- 182

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                  H  ++  I +DPP  G    
Sbjct: 183 -------HGNKYDAIIMDPPSYGRGPK 202


>gi|240171251|ref|ZP_04749910.1| hypothetical protein MkanA1_18201 [Mycobacterium kansasii ATCC
           12478]
          Length = 247

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A  GI+G++L+   G G  ++  A     V  V+ +  ++E AR N     V  V   
Sbjct: 38  LVAFGGIRGEVLDPGTGPGYHAIHYASQGFSVTGVDGSPSAIERARRNADRAGVT-VDFR 96

Query: 263 RMSSKEF 269
              +   
Sbjct: 97  VADATRL 103


>gi|311898531|dbj|BAJ30939.1| putative RNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 191

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 15/119 (12%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA 253
             M   V A +  I G  +L+L+ G+G   L  L+R     L VE    +V   R N+  
Sbjct: 28  EAMFSTVEALSGPIAGARMLDLFAGSGAVGLEALSRGAAHALLVESDPGAVRTVRENVRT 87

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
             +   ++    +++   +                +  +  +F+DPP +  D     M+
Sbjct: 88  LGLPGAEVRAEKAEKVIASAP-------------PATPYDLVFLDPPYAVEDAVLREML 133


>gi|331646530|ref|ZP_08347633.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli M605]
 gi|281178398|dbj|BAI54728.1| putative methyltransferase [Escherichia coli SE15]
 gi|330911077|gb|EGH39587.1| methylase of polypeptide chain release factor [Escherichia coli
           AA86]
 gi|331045282|gb|EGI17409.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli M605]
          Length = 277

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVALAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|269102825|ref|ZP_06155522.1| hypothetical protein VDA_002251 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162723|gb|EEZ41219.1| hypothetical protein VDA_002251 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 396

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 16/112 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH--VNNVKIVRMSSK 267
             +L  +C  G F L  L     +V+ V++++P+++ A+ N   N   + N + +     
Sbjct: 222 KRVLNCFCYTGGFGLYALKGGASQVVNVDVSQPALDTAKMNAEMNGYPLENAEFLNADV- 280

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
                      F  L++      +F  + +DPP+        VG  + Y  I
Sbjct: 281 -----------FKLLREYRDRGEQFDVVIMDPPKFAESKSQLVGACRGYKDI 321


>gi|194709257|pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
           In Complex With Adomet
 gi|194709258|pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
           In Complex With Adohcy
 gi|194709259|pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
           In Complex With Adomet And Guanosine
          Length = 381

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 21/147 (14%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNFSLVLARHFD 232
              +  +   F+         +L   L    G +G     +L+L  G G  +L LAR   
Sbjct: 197 EYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA 256

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE    SV + +  + AN +      +    +  +A+  E              RF
Sbjct: 257 EVVGVEDDLASVLSLQKGLEANALK----AQALHSDVDEALTEEA-------------RF 299

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHIL 319
             I  +PP        + + QA+ ++ 
Sbjct: 300 DIIVTNPPFHVGGAVILDVAQAFVNVA 326


>gi|55980502|ref|YP_143799.1| ribosomal RNA small subunit methyltransferase [Thermus thermophilus
           HB8]
 gi|262118483|pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
           Methyltransferase Rsmc (Ttha0533) In Complex With
           Cofactor S-Adenosyl-L-Methionine
 gi|281500681|pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
           Methyltransferase Rsmc (Ttha0533)
 gi|55771915|dbj|BAD70356.1| probable ribosomal RNA small subunit methyltransferase [Thermus
           thermophilus HB8]
          Length = 375

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 21/147 (14%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNFSLVLARHFD 232
              +  +   F+         +L   L    G +G     +L+L  G G  +L LAR   
Sbjct: 197 EYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA 256

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE    SV + +  + AN +      +    +  +A+  E              RF
Sbjct: 257 EVVGVEDDLASVLSLQKGLEANALK----AQALHSDVDEALTEEA-------------RF 299

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHIL 319
             I  +PP        + + QA+ ++ 
Sbjct: 300 DIIVTNPPFHVGGAVILDVAQAFVNVA 326


>gi|329889554|ref|ZP_08267897.1| SAM dependent methyltransferase [Brevundimonas diminuta ATCC 11568]
 gi|328844855|gb|EGF94419.1| SAM dependent methyltransferase [Brevundimonas diminuta ATCC 11568]
          Length = 303

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 19/124 (15%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F         +  EW+ A  + +Q   +L L+   G  SL  +     V  V+ +K SV
Sbjct: 106 AFF---PEQAANW-EWLDARVRTLQQPKILNLFGYTGVASLACSAAGAHVTHVDASKKSV 161

Query: 245 EAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
             AR N   + + +  ++ +   +++F     R               ++  I +DPP+ 
Sbjct: 162 AYARENAELSGLADRPIRWIVEDARKFVAREVR------------RGSKYDGIILDPPKY 209

Query: 303 GLDD 306
           G   
Sbjct: 210 GRGA 213


>gi|321313777|ref|YP_004206064.1| ribosomal RNA methyltransferase [Bacillus subtilis BSn5]
 gi|320020051|gb|ADV95037.1| ribosomal RNA methyltransferase [Bacillus subtilis BSn5]
          Length = 201

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             ++G +L++ CG G   L LA  F    +  +++ + +VE +  N   N + NVKI + 
Sbjct: 56  PEVEGGILDVGCGYGPIGLSLASDFKDRSIHMIDVNERAVELSNENAEQNGITNVKIYQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYR 291
               F+     +   + L +  I + +
Sbjct: 116 DL--FSNVDSAQTFASILTNPPIRAGK 140


>gi|304316987|ref|YP_003852132.1| hypothetical protein Tthe_1538 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778489|gb|ADL69048.1| protein of unknown function Met10 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 391

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
                    + D+L+ +   G+FS+  L      V  V+I++ +++ A+ NI  N  ++ 
Sbjct: 208 RAAIKKYVNEADVLDCFSHTGSFSVHALHYGAKSVETVDISQTALDIAKKNIELNGYLDR 267

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPH 317
                 ++            F+ LK  D    +F  + +DPP      +     ++ Y  
Sbjct: 268 CHFTCDNA------------FDLLKKYDEKKKKFDVVILDPPAFTKSKETVKDAIRGYKE 315

Query: 318 I 318
           I
Sbjct: 316 I 316


>gi|134046833|ref|YP_001098318.1| putative RNA methylase [Methanococcus maripaludis C5]
 gi|132664458|gb|ABO36104.1| putative RNA methylase [Methanococcus maripaludis C5]
          Length = 260

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +  +   +  + +L  G+G  +++ A++   V AVE+   + E  R NI  N   N+ +
Sbjct: 27  AVETSVKSEDIVFDLGTGSGILAMIAAKNAKHVYAVELDPITTEYTRENIKENDFKNITV 86

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           +  ++  +  + + +     L D  + +     +       GL      ++   P  +Y 
Sbjct: 87  IEDNAAYYPFSEKADLVIAELLDTGLITEPQVPVLNSIIEKGLLKKGGIII---PEEVYN 143

Query: 322 S 322
           S
Sbjct: 144 S 144


>gi|119719756|ref|YP_920251.1| methyltransferase small [Thermofilum pendens Hrk 5]
 gi|119524876|gb|ABL78248.1| methyltransferase small [Thermofilum pendens Hrk 5]
          Length = 207

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 61/157 (38%), Gaps = 14/157 (8%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA 236
            L        FT P    +  ++  VL A+   +  + E+  G G  +L+ A+     + 
Sbjct: 25  GLTLLVPPGCFT-PIGTYSTWLVSRVLEASPSAEVAV-EVGTGVGTLALLAAKRGAYAVG 82

Query: 237 VEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           VE+++P + AA+ N   N ++  +  V   +    ++      F     + + S + + +
Sbjct: 83  VEVSEPCLRAAKANARRNSLDGLLDFVLCDAGSCLRSSSAGLVFTNPPYLPVDSEKPEDV 142

Query: 296 FVDPPRSGLDDA--------TVGMVQAYPHILYISCN 324
              P   G D +         V + +    ++Y + N
Sbjct: 143 ---PVAGGSDLSIFKKMLVNAVRIAKPGAPVVYSASN 176


>gi|110799361|ref|YP_696707.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           ATCC 13124]
 gi|122958752|sp|Q0TNT3|PRMA_CLOP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|110674008|gb|ABG82995.1| ribosomal protein L11 methyltransferase [Clostridium perfringens
           ATCC 13124]
          Length = 313

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 1/92 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L         + ++  G+G  +LV ++     VL V++   +V++A+ NI+ 
Sbjct: 163 TTRMCVQALDKYVKADTTVFDIGTGSGILALVASKLGAKHVLGVDLDPVAVDSAKENISF 222

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N+V+N++++  +  +           N + +I
Sbjct: 223 NNVDNIEVLYGNLLDVVDGKADIVVANIIAEI 254


>gi|66814686|ref|XP_641522.1| tRNA -methyltransferase [Dictyostelium discoideum AX4]
 gi|60469559|gb|EAL67549.1| tRNA -methyltransferase [Dictyostelium discoideum AX4]
          Length = 460

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 67/168 (39%), Gaps = 15/168 (8%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL------- 171
           +  I H  L D        +  A+  +  Q++ +         + R +  E L       
Sbjct: 118 IGHIIHVNLKDEQLPFKYIIGQAILDKNIQVKTVLNKVGEIDTVFRTFKIEILAGEPDLV 177

Query: 172 -TVAGRTLIYRQ-IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
             +     I+R   E  +   N+ +    +E V   T   +  + +++ G G F+L  A+
Sbjct: 178 AEIKENECIFRFNFEEVYW--NSRLQYEHMELV--NTFKKEDIICDMFAGVGPFALPAAK 233

Query: 230 -HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRR 275
               +V A ++   SV+  + N   N + + V+I  + +++F +++  
Sbjct: 234 IKKCKVYANDLNPSSVKYMKENAKTNRLESKVEISNLDARDFVKSLVE 281


>gi|332214229|ref|XP_003256234.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Nomascus
           leucogenys]
          Length = 448

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 66/194 (34%), Gaps = 15/194 (7%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 108 CLEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWEIVA 165

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
           + L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 166 LALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSF------ 219

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 220 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 277

Query: 251 IAANHVNNVKIVRM 264
           +  N V +   V  
Sbjct: 278 LEINGVADRCQVHF 291


>gi|296269771|ref|YP_003652403.1| methyltransferase small [Thermobispora bispora DSM 43833]
 gi|296092558|gb|ADG88510.1| methyltransferase small [Thermobispora bispora DSM 43833]
          Length = 203

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 23/123 (18%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +LE         +G+LL+L CG G+ +L LA       V AV++ + S+E    N  
Sbjct: 45  TRVLLETA--PPPPPEGNLLDLGCGYGSIALTLAMRAPGATVWAVDVNRRSLELCARNAQ 102

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              + NV+ +                   +        RF  I+ +PP      A   ++
Sbjct: 103 RACLYNVRTMHAD---------------EMPG----DVRFTGIWSNPPIRIGKAALHALL 143

Query: 313 QAY 315
             +
Sbjct: 144 TRW 146


>gi|288927293|ref|ZP_06421140.1| ribosomal protein L11 methyltransferase [Prevotella sp. oral taxon
           317 str. F0108]
 gi|288330127|gb|EFC68711.1| ribosomal protein L11 methyltransferase [Prevotella sp. oral taxon
           317 str. F0108]
          Length = 280

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 20/130 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M+   L +       +L+  CG G   +V A+   DRVL  ++ + SV+ + +N   
Sbjct: 128 TTRMVVAQLLSMPLKGKRILDCGCGTGILGIVAAKLGADRVLGYDVDEWSVDNSLHNADL 187

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N V N+ + +  +                   +    +F  +  +  R+ L       VQ
Sbjct: 188 NGVQNMAVRKGDATTL----------------NAGDGQFDVVVANINRNILLADMPRWVQ 231

Query: 314 AY---PHILY 320
                  I++
Sbjct: 232 MMAQGGRIVF 241


>gi|158295382|ref|XP_316184.4| AGAP006124-PA [Anopheles gambiae str. PEST]
 gi|157016010|gb|EAA10891.4| AGAP006124-PA [Anopheles gambiae str. PEST]
          Length = 556

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRM 264
                  L +LY G G F++  AR   +VLA ++   S EA   N A N V  +V     
Sbjct: 255 MLAKTDTLFDLYAGVGPFTVPAARRGCKVLANDLNPDSYEALVNNCALNKVSKHVTCHNK 314

Query: 265 SSKEFTQAMRREREFNRLKDIDIHS 289
            + +F +   ++    +  D  +  
Sbjct: 315 DAVDFIKHEVKQALLEKCTDESMEG 339


>gi|73669891|ref|YP_305906.1| methyltransferase [Methanosarcina barkeri str. Fusaro]
 gi|72397053|gb|AAZ71326.1| methyltransferase [Methanosarcina barkeri str. Fusaro]
          Length = 343

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 92/273 (33%), Gaps = 40/273 (14%)

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA---------RKY 147
           +  L+  L + +  +  S   I+  I    + +   +   R+ +AL +         R +
Sbjct: 75  KDSLKGFLSETELASVPSGWQILGDIIIVFIPEILEDKKKRIAEALLSMYPRCRTVVRDF 134

Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML------EW 201
            I+   R  K ++ L      E  T+      +      F Q    +   M       E 
Sbjct: 135 GIEGQFRQPKRELLLG----SETETIHREHGCF------FKQ---DVTKVMYSKGNLEER 181

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
              +  G    +++++ G G FS+ +A      +++ +EI   S    + NI  N V ++
Sbjct: 182 KRMSRLGEGEVIVDMFAGIGYFSIPMAVHSRPKKIIGIEINPESFAYLKENIRLNKVEDI 241

Query: 260 KI-VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-----DATVGMVQ 313
            + +             +R          H        +      L        ++  ++
Sbjct: 242 FVPICGDCSRVAPEGTADRVLMGYVGTTHHYLEPAIKALKKNGGILHYHETVPESLARIR 301

Query: 314 AYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
               I   +C   +L + + IL  TH I++ + 
Sbjct: 302 PKERIEKAAC---ALGKKVEIL-ETHRIKKYSP 330


>gi|289678405|ref|ZP_06499295.1| modification methylase HemK [Pseudomonas syringae pv. syringae FF5]
          Length = 277

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAQVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +NN ++                 F       +   +F  I  +PP
Sbjct: 154 QRLQLNNAEV-----------------FESHWFGGLQGRQFDLIISNPP 185


>gi|284163497|ref|YP_003401776.1| hypothetical protein Htur_0202 [Haloterrigena turkmenica DSM 5511]
 gi|284013152|gb|ADB59103.1| protein of unknown function Met10 [Haloterrigena turkmenica DSM
           5511]
          Length = 416

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           E       G   + + +++ G G F+L +AR   RV A EI   +      N   N V +
Sbjct: 229 ERARMGELGSTDERVFDMFAGIGYFTLPMARAGARVTATEINPTAFRYLLENAMLNDVGD 288

Query: 258 NVKIVRMSSKEFTQAMRRER 277
            V       +E    +  +R
Sbjct: 289 RVDAYMTDCRELAGELEADR 308


>gi|283785499|ref|YP_003365364.1| protein methyltransferase hemk (protein-glutamine N
           methyltransferase) [Citrobacter rodentium ICC168]
 gi|282948953|emb|CBG88556.1| protein methyltransferase hemk (protein-glutamine N
           methyltransferase) [Citrobacter rodentium ICC168]
          Length = 278

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N A   
Sbjct: 98  LVEQALARLPASPCRILDLGTGTGAIALALATERPDCVITAVDRMPDAVALAQRNAAHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + NV+I++                       +   +F  I  +PP
Sbjct: 158 IGNVRILQSD-----------------WFSAVKGEQFDMIVSNPP 185


>gi|256784978|ref|ZP_05523409.1| DNA methylase [Streptomyces lividans TK24]
 gi|289768870|ref|ZP_06528248.1| RsmD family RNA methyltransferase [Streptomyces lividans TK24]
 gi|289699069|gb|EFD66498.1| RsmD family RNA methyltransferase [Streptomyces lividans TK24]
          Length = 195

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L  L+R    VL VE    +    R N+ +  +   ++    +++  
Sbjct: 49  RVLDLYAGSGAVGLEALSRGAGHVLLVEADARAARTVRANVDSLGLPGAEVRAGRAEQII 108

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +                 +  +  +F+DPP +  DD    ++
Sbjct: 109 RT-------------PAPAEPYDVVFLDPPYAVSDDDLREIL 137


>gi|163803407|ref|ZP_02197282.1| hypothetical protein 1103602000602_AND4_16474 [Vibrio sp. AND4]
 gi|159172811|gb|EDP57656.1| hypothetical protein AND4_16474 [Vibrio sp. AND4]
          Length = 206

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G       +R  ++V  +E+   + +  + N+A
Sbjct: 46  VKETLFNWLAQDVP--QAKCLDLFAGSGGLGFESASRQAEQVTMIELNPQAFQQLQKNVA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           + + NN++IV   +  F Q                       +F+DPP R GL D TV +
Sbjct: 104 SLNANNIQIVNTDAIHFLQQ---------------PGTPHHVVFIDPPFRKGLLDETVTL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LEQNGWLAEDAMIYI 163


>gi|126322017|ref|XP_001372768.1| PREDICTED: similar to epithelial calcium channel [Monodelphis
           domestica]
          Length = 442

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 18/199 (9%)

Query: 76  FMPGSLLINALMIEM-----MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
             P   L   L   +     M +  LE  L     +   L   S+ +     + +L    
Sbjct: 92  CSPAQKLCQELQCLVESQGHMWSTELEKDLPRSWQRHGDLLLLSEDSFKDPHWKKLEPGL 151

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR--QIENSFT 188
           W+  A  L     A++ ++   G      I +  D+        G    +   Q   SF 
Sbjct: 152 WKTVASALGGQRLAKRGRVSPGGTRTPKVILMLGDHGWVEHVDNGIRYTFDVTQSMFSF- 210

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVEIAKPSVE 245
                   ++ E +  A+    G++L +LY G G F+L   +  +   V A E    +  
Sbjct: 211 -------GNITEKLRVASMSCAGEVLVDLYAGIGYFTLPFLIHANAAFVHACEWDPHAAA 263

Query: 246 AARYNIAANHVNNVKIVRM 264
           A + N+  N V++   + +
Sbjct: 264 ALKKNLELNGVSDRCSIHL 282


>gi|21223923|ref|NP_629702.1| DNA methylase [Streptomyces coelicolor A3(2)]
 gi|4007726|emb|CAA22410.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
          Length = 195

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L  L+R    VL VE    +    R N+ +  +   ++    +++  
Sbjct: 49  RVLDLYAGSGAVGLEALSRGAGHVLLVEADARAARTVRANVDSLGLPGAEVRAGRAEQII 108

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +                 +  +  +F+DPP +  DD    ++
Sbjct: 109 RT-------------PAPAEPYDVVFLDPPYAVSDDDLREIL 137


>gi|87309429|ref|ZP_01091564.1| Putative RNA methylase [Blastopirellula marina DSM 3645]
 gi|87287737|gb|EAQ79636.1| Putative RNA methylase [Blastopirellula marina DSM 3645]
          Length = 308

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 1/125 (0%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVK 260
            + AT      +++L  G G  S   AR    V   E     V+AA+  +  NHV   V 
Sbjct: 44  AIEATVRPGDKVVDLGGGTGVLSFFAARAGAEVWYCERNPELVDAAQRILRDNHVSQQVH 103

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           IV+  + EF      +     +  + +   +   +     R+        + +  P    
Sbjct: 104 IVQADAAEFAPPTPVDFVICEMLHVGLLREKQIAVISAFQRNYQQAHGPALPRFIPEGTL 163

Query: 321 ISCNP 325
           ++C P
Sbjct: 164 LACQP 168


>gi|84494538|ref|ZP_00993657.1| putative methylase [Janibacter sp. HTCC2649]
 gi|84384031|gb|EAP99911.1| putative methylase [Janibacter sp. HTCC2649]
          Length = 285

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 27/135 (20%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI------QGDLLELYCGNGNFSLVL 227
             R L        F          +  W + A          +  +++L  G+G  +L +
Sbjct: 77  WFRGLELEVGPGVF--VPRPETEVVAGWAIDAVTECVEVGVAEPVVIDLCTGSGAIALAI 134

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  RV AVE++  +V  A+ N     ++ V+IV   +            F  L ++
Sbjct: 135 KSEVPDARVHAVEVSDLAVAWAQRNRERLGLD-VEIVHGDA---------VTAFEELAEV 184

Query: 286 DIHSYRFKTIFVDPP 300
           D        +  +PP
Sbjct: 185 D-------VVVSNPP 192


>gi|255083204|ref|XP_002504588.1| predicted protein [Micromonas sp. RCC299]
 gi|226519856|gb|ACO65846.1| predicted protein [Micromonas sp. RCC299]
          Length = 434

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 15/126 (11%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAA 253
            MLEW  +        +L++ CG G  S  LA+      +V  + ++   V+ A    A 
Sbjct: 184 KMLEW--SECPPEPARVLDVGCGIGGTSRHLAKRLGPNSQVQGITLSPNQVKRATELAAE 241

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             V N K   M++     AM    +   L                P +    +  + +++
Sbjct: 242 QGVPNAKFQVMNA----LAMDFPDDTFDLVWACESGEH------MPDKKKYVEEMIRVLK 291

Query: 314 AYPHIL 319
               I+
Sbjct: 292 PGGTIV 297


>gi|118470628|ref|YP_886876.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171915|gb|ABK72811.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 226

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             G++L+  CG    +L LA      + ++ +  ++E AR   A   + N          
Sbjct: 44  FHGEVLDAGCGEAATALYLAAQGFTTVGLDQSPTAIELARAEAARRGLTNATFEVADISS 103

Query: 269 FT 270
           FT
Sbjct: 104 FT 105


>gi|126180199|ref|YP_001048164.1| methyltransferase type 11 [Methanoculleus marisnigri JR1]
 gi|125862993|gb|ABN58182.1| Methyltransferase type 11 [Methanoculleus marisnigri JR1]
          Length = 196

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 9/115 (7%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA    I G +L++ CG G+  L  A     VL ++ A  ++  AR   A   +   +  
Sbjct: 26  LARAGEITGSVLDIGCGTGDHVLFFAGEGHEVLGIDTASLAIRKAREKAAKRGLQ-AQFF 84

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
             ++ E +         NR  D  I S  F T   D  R  L ++   ++     
Sbjct: 85  VGNALELSA-------LNRTFDTVIDSGLFHT-LSDEDRPALAESLAAVLAPGGR 131


>gi|226942497|ref|YP_002797570.1| SAM-dependent methyltransferase [Azotobacter vinelandii DJ]
 gi|226717424|gb|ACO76595.1| SAM-dependent methyltransferase [Azotobacter vinelandii DJ]
          Length = 397

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 27/141 (19%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L     A       +L+L+   G + +   A     V+ V+ +  +++    N A N V 
Sbjct: 210 LNRARLAPYVKGKRVLDLFSYVGGWGVQAAAFGASEVMCVDGSALALDGVERNAALNGV- 268

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-------------- 303
                   +++   A      F  +K++     RF  +  DPP                 
Sbjct: 269 --------AEKM--ACVEGDVFEAMKELKAAEERFDVVIADPPAFIKRKKDLKNGEAAYR 318

Query: 304 -LDDATVGMVQAYPHILYISC 323
            L++A + ++     ++  SC
Sbjct: 319 RLNEAAMRLLNKDGILVSASC 339


>gi|302541623|ref|ZP_07293965.1| methyltransferase domain protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459241|gb|EFL22334.1| methyltransferase domain protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 255

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 20/152 (13%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-------------LELYCGNGNFSL 225
            YR+   S+ Q  +      + W    +     D+             L+L CGNG  + 
Sbjct: 4   RYREAWESYWQATSDAPGEAI-WDADPSLSAARDVDRLAPHADLSLPILDLGCGNGTQTR 62

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA    R L ++++  +VE AR    A+     +  ++S  +   A  RE    RL D 
Sbjct: 63  YLAARCGRALGIDLSHAAVEHARR---ADTARTAEFRQLSLTD--PAAVREL-HERLGDA 116

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +++          P R  + +A   +V +   
Sbjct: 117 NVYMRAVIHQSDAPDRRPVAEAVATLVGSRGR 148


>gi|108805666|ref|YP_645603.1| type 11 methyltransferase [Rubrobacter xylanophilus DSM 9941]
 gi|108766909|gb|ABG05791.1| Methyltransferase type 11 [Rubrobacter xylanophilus DSM 9941]
          Length = 246

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 213 LLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L  G G  +L  AR      RV  +++    VE AR N +   V+NV+ ++   ++ 
Sbjct: 64  VLDLGSGGGLDALRAARRVSPGGRVYGLDMTGEMVELARRNASEAGVHNVEFLQGEIEDI 123


>gi|315230383|ref|YP_004070819.1| tRNA (Guanine37-N1) -methyltransferase [Thermococcus barophilus MP]
 gi|315183411|gb|ADT83596.1| tRNA (Guanine37-N1) -methyltransferase [Thermococcus barophilus MP]
          Length = 330

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +++ G G +S++LA+    V A +I   +V+    N   N   NV  +    ++    
Sbjct: 185 VFDMFAGVGPYSILLAKKVRLVFACDINPWAVKYLEENKRLNKTPNVIPILGDVRKVAGQ 244

Query: 273 MRREREFNRLKDIDIH 288
           ++ +R    L      
Sbjct: 245 IKADRVIMNLPKFAHE 260


>gi|296109790|ref|YP_003616739.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
 gi|295434604|gb|ADG13775.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
          Length = 252

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 43/96 (44%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA  K  +G + +L  G+G  +++ A+  ++V A+E+   + E A+ NI  N   N+ + 
Sbjct: 24  LAIEKYAKGIVYDLGTGSGILAMIAAKKAEKVYALELDSFTYEYAKENIERNGFKNILLY 83

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
              ++ F    + +     L D  + +     +   
Sbjct: 84  EADAEFFDYKEKADLIIAELLDTALITEPQVRVLNT 119


>gi|227824240|ref|ZP_03989072.1| modification methylase [Acidaminococcus sp. D21]
 gi|226904739|gb|EEH90657.1| modification methylase [Acidaminococcus sp. D21]
          Length = 298

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 28/143 (19%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  ++ ++D    V   TLI R                ++E +LA T     D+LEL  G
Sbjct: 78  ILGEKGFLDYTFAVTADTLIPRPE-----------TELLVEKILAVTADGPLDILELGVG 126

Query: 220 NG--NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           +G    SL+L R   + L V+I++ +V  AR N     V +               R E 
Sbjct: 127 SGAILISLLLKRKEAQGLGVDISEGAVAVARKNAKNLGVTD---------------RSEI 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
             + L +      +F  I  +PP
Sbjct: 172 IVSDLFEKVPEGRKFDLIVSNPP 194


>gi|154250324|ref|YP_001411149.1| ribosomal L11 methyltransferase [Fervidobacterium nodosum Rt17-B1]
 gi|154154260|gb|ABS61492.1| ribosomal L11 methyltransferase [Fervidobacterium nodosum Rt17-B1]
          Length = 247

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
               M    L        D+L+L CG+G   + LA+    +RVLAV+    +VE A  N 
Sbjct: 104 QTTKMSAMYLKRYLKPGMDVLDLGCGSGILGI-LAKKLGANRVLAVDNDPLAVEVAMENA 162

Query: 252 AANHVN 257
             N V+
Sbjct: 163 ERNKVD 168


>gi|11499555|ref|NP_070797.1| hypothetical protein AF1973 [Archaeoglobus fulgidus DSM 4304]
 gi|2648568|gb|AAB89282.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 336

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 30/258 (11%)

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           + F  G  ++            L  +LR K+ +    T+      + ++    LD+  RE
Sbjct: 53  ESFFKGYTIVEQDNPVFSRKRSLREILRGKVPEELIPTNYKVIGDIVVV---KLDERARE 109

Query: 134 CAIRLRDALHARK--------YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            A  + +AL            Y    + R  + ++      V E          +R    
Sbjct: 110 YAKVIGEALMQINPCKAVWCDYGRYGMKRKPRMELIAGEGSVTEH---RENGCRFRIDVA 166

Query: 186 S--FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAK 241
              F+  N      M    +A        +++++ G G FS+ +A      R+ ++EI  
Sbjct: 167 KVMFSLGN--QAERMR---IARLVEDGEVVVDMFAGIGYFSIPIAVHSKARRIYSIEINP 221

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S +    NI  N V N+  +   S+  T     +R    +  I  H Y    I     R
Sbjct: 222 ESYKLLLENIKLNDVGNIVPILGDSQFVTPEGVADRVV--MGHIYCHDYLHTAI-----R 274

Query: 302 SGLDDATVGMVQAYPHIL 319
           +  +   V   +A P  +
Sbjct: 275 ALKERGVVHYHEATPEAV 292


>gi|323704814|ref|ZP_08116391.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535740|gb|EGB25514.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 279

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 21/146 (14%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVL 235
            LI++   N     N      ++E VL   +     +L++  G+G  ++ +A+    +V 
Sbjct: 80  GLIFKVSPNVLIPRND--TEVLVEEVLKRLQ-KNDVVLDIGTGSGAIAVSIAKYKDVKVY 136

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AV+I+  ++  AR N   N V + KIV + S  F+   +                +F  I
Sbjct: 137 AVDISDDALSVARDNAYENGVLD-KIVFLKSDLFSSVPK--------------DVKFDVI 181

Query: 296 FVDPP--RSGLDDATVGMVQAYPHIL 319
             +PP  RSG  D     V+  P I 
Sbjct: 182 VSNPPYIRSGDIDKLQEEVKKEPKIA 207


>gi|227500739|ref|ZP_03930788.1| methylase of polypeptide chain release factor family protein
           [Anaerococcus tetradius ATCC 35098]
 gi|227217146|gb|EEI82499.1| methylase of polypeptide chain release factor family protein
           [Anaerococcus tetradius ATCC 35098]
          Length = 455

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L             +L+L  G G   ++ A+   +V+++EI   +V   R NI  N ++ 
Sbjct: 138 LYLAENIKFDKDAIVLDLCSGTGIQGMIAAKSAKKVISIEINPKAVNICRLNIFLNKLDK 197

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +                E     L +    + +F  I+ +PP
Sbjct: 198 I---------------IELRKGNLYNCLNSNEKFDYIYANPP 224


>gi|221068228|ref|ZP_03544333.1| ubiquinone biosynthesis O-methyltransferase [Comamonas testosteroni
           KF-1]
 gi|220713251|gb|EED68619.1| ubiquinone biosynthesis O-methyltransferase [Comamonas testosteroni
           KF-1]
          Length = 237

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 63/153 (41%), Gaps = 9/153 (5%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L+W+ A        +L++ CG G  +  +AR   +V+ +++A  ++  A+ + 
Sbjct: 33  HQINPLRLDWINAQAPLANQRVLDVGCGGGILADSMARKGAKVVGIDLATKALRVAQLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                 N++   +S ++  Q      +     ++  H     +I           A   +
Sbjct: 93  LETGTPNIQYHEVSVEQLAQEQPASFDVVTCMEMLEHVPDPASIV---------RACAQL 143

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
           V+    + + + N ++    L+I++  + ++ +
Sbjct: 144 VKPGGWVFFSTINRNAKAFALAIVAAEYMLKMI 176


>gi|319945453|ref|ZP_08019713.1| protein methyltransferase HemK [Lautropia mirabilis ATCC 51599]
 gi|319741239|gb|EFV93666.1| protein methyltransferase HemK [Lautropia mirabilis ATCC 51599]
          Length = 297

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 73/229 (31%), Gaps = 31/229 (13%)

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA 144
                +   IR   L RA+  ++  L   + Q +   + H   DD           AL  
Sbjct: 13  DTAPSIDDLIRHSQLPRAEARRL--LACLTGQPLTWFMAH--GDDPADPDIAARFQALAE 68

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
           R+   + +      +    R +      +  R      +E +  Q         L  +  
Sbjct: 69  RRRAGEPLAYLLGQQEFYGRPFAVSPAVLIPRADTETLVETALEQ---------LTLLRQ 119

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
             + +   LLEL  G+G  ++ LA       V AVE +  ++  A+ N  A   + +   
Sbjct: 120 QRRAVPLSLLELGTGSGIIAITLALEAPDTEVHAVERSPEALAMAQQNAKALGADRIHWH 179

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             S   + QA+   R              F  I  +PP     D  +  
Sbjct: 180 AGS---WWQALASPR-------------HFDLIVSNPPYIAAGDHHLQQ 212


>gi|168060475|ref|XP_001782221.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666314|gb|EDQ52972.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 480

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 15/117 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVN-- 257
            +L  +      +L+L C +G F+L  A      +  V+ + P++E A+ N + N ++  
Sbjct: 295 RLLLRSLASGSSVLDLCCYSGGFALNAALGGASYITGVDSSSPALELAKSNASLNRLDAN 354

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           ++  V+    E+ ++   E              ++  + +DPP+   +   +    A
Sbjct: 355 SIDFVKADVAEYMKSALSE------------GKQWDIVVLDPPKLAPNRKVLQRATA 399


>gi|302558167|ref|ZP_07310509.1| RsmD family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302475785|gb|EFL38878.1| RsmD family RNA methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 195

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L  L+R    VL VE    +V   R N+ +  +   ++    +++  
Sbjct: 49  RVLDLYAGSGAVGLEALSRGAGHVLLVEADARAVRTVRENVTSLGLPGAEVRSGKAEQIA 108

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +                    +  +F+DPP +  D     ++
Sbjct: 109 RTAP-------------PPEPYDLVFLDPPYAVPDGDLREIL 137


>gi|149197630|ref|ZP_01874680.1| hypothetical protein LNTAR_20393 [Lentisphaera araneosa HTCC2155]
 gi|149139200|gb|EDM27603.1| hypothetical protein LNTAR_20393 [Lentisphaera araneosa HTCC2155]
          Length = 378

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 49/167 (29%), Gaps = 36/167 (21%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR- 229
           ++        +     F+   A      L   +    G   ++L+L CG G   L LA+ 
Sbjct: 201 VSTMNAEFTMQTRPGVFSHGRADTGGVALSEAIDVIPGE--NILDLGCGAGLIGLALAKR 258

Query: 230 -------HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
                  H   V+ V+    S+E  + NI  N   N + +     E  +           
Sbjct: 259 QNDAKPDHGGSVVLVDSNIRSIECCKKNIEINGFENCEAIASDLYETEKT---------- 308

Query: 283 KDIDIHSYRFKTIFVDPPRSGLD-------DATVGMVQAYPHILYIS 322
                    F  I  +PP            +  +  +     +  +S
Sbjct: 309 ---------FDLIVGNPPYFAGQRIGEYFIETAMKYLNKTGRLAIVS 346


>gi|193069963|ref|ZP_03050911.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli E110019]
 gi|192956716|gb|EDV87171.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli E110019]
          Length = 277

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSQAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|311063947|ref|YP_003970672.1| 16S RNA methylase [Bifidobacterium bifidum PRL2010]
 gi|310866266|gb|ADP35635.1| 16S RNA methylase [Bifidobacterium bifidum PRL2010]
          Length = 217

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 27/126 (21%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
               G LL+L CG G  SL LA       V AV++ + +++  R N  +N   ++     
Sbjct: 71  PPETGTLLDLGCGWGPVSLALAFASPKADVWAVDVNERALDLTRANAKSNGCEHIHAAS- 129

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHILYISC 323
                              +       F  I+ +PP R G D     ++   P +     
Sbjct: 130 ------------------PEQVPADLTFDAIWSNPPIRIGKDALHDLLMTWLPRL----- 166

Query: 324 NPDSLC 329
           NP    
Sbjct: 167 NPAGAA 172


>gi|297683586|ref|XP_002819452.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Pongo
           abelii]
          Length = 448

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 108 CLEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLMLLSEDCFQAKQWKNLGPELWETVA 165

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
           + L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 166 LALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSF------ 219

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 220 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 277

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +  N   +  +I    +++   +   +R    L       +      +     G+
Sbjct: 278 LEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGI 332


>gi|229085650|ref|ZP_04217881.1| Methyltransferase type 11 [Bacillus cereus Rock3-44]
 gi|228697676|gb|EEL50430.1| Methyltransferase type 11 [Bacillus cereus Rock3-44]
          Length = 261

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+    LA  F  V+A+++ +  +E 
Sbjct: 19  VNSQIHAKGQDLQYVVQQVKNRKNIHLLDIATGGGHVVNTLAPLFKSVIALDLTEKMIEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEF 269
           A+  I +N  +NV  V  ++++ 
Sbjct: 79  AKEFIHSNGHDNVSFVAGNAEDL 101


>gi|150401069|ref|YP_001324835.1| methyltransferase small [Methanococcus aeolicus Nankai-3]
 gi|150013772|gb|ABR56223.1| methyltransferase small [Methanococcus aeolicus Nankai-3]
          Length = 201

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V A   G   D+L++ CG G   + +A   + +   +I   +V  A+ N+  N+++  K 
Sbjct: 48  VEALQLGKNYDILDIGCGYGVVGISIANEVNSITMTDINNRAVNLAKKNLKLNNID--KY 105

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +        Q    +   N+         ++  I  +PP     D    +++    IL
Sbjct: 106 LEEDKITIVQGNLYQNVKNK---------KYDLIISNPPIKAGKDIIQQIIKDGKEIL 154


>gi|322491043|emb|CBZ26307.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 514

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 14/103 (13%)

Query: 212 DLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G   + LA+H     V A++I   +V  +R N   N ++  +   M S  F
Sbjct: 305 RILDVCCGTGCIGVALAKHLSSAVVTALDILPEAVRVSRENAMRNGISPERYTAMESDMF 364

Query: 270 TQAMRREREFNRLKDI------------DIHSYRFKTIFVDPP 300
           +  +       +                D ++  +  I  +PP
Sbjct: 365 SCFLEEPVPAQQGDSAHLSEDRPLGTVNDAYAGTYDVIVSNPP 407


>gi|238026431|ref|YP_002910662.1| protein-L-isoaspartate O-methyltransferase [Burkholderia glumae
           BGR1]
 gi|237875625|gb|ACR27958.1| Protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           glumae BGR1]
          Length = 217

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   ML+ +          +LE+  G+G  + +LA     V+ V+I    V  A  N+
Sbjct: 63  PRVEARMLQELAVKKHES---ILEIGAGSGYMAALLAHRGQHVVTVDIDPELVRFATDNL 119

Query: 252 AANHVNNVKIVRMSSK 267
             N V NV++V   + 
Sbjct: 120 RNNGVTNVEVVLGDAA 135


>gi|199599024|ref|ZP_03212431.1| 16S RNA G1207 methylase RsmC [Lactobacillus rhamnosus HN001]
 gi|199590060|gb|EDY98159.1| 16S RNA G1207 methylase RsmC [Lactobacillus rhamnosus HN001]
          Length = 198

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 21/121 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
             ++  VLA T    G +L++  G G   L LA+HF   +V   ++ + ++  A+ N A 
Sbjct: 46  RVLIATVLAETLP-DGPILDVGAGYGPIGLALAKHFPNRQVTMSDVNERALALAKQNAAD 104

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + NV I+  S                    D    +F  +  +PP         G++ 
Sbjct: 105 NGITNVSIIESSM------------------YDGIDDQFAVVVTNPPIRAGKAIVSGILS 146

Query: 314 A 314
            
Sbjct: 147 G 147


>gi|195376371|ref|XP_002046970.1| GJ13175 [Drosophila virilis]
 gi|194154128|gb|EDW69312.1| GJ13175 [Drosophila virilis]
          Length = 438

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 22/222 (9%)

Query: 91  MATIRLEPLLRAKL-FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR-LRDALHARKYQ 148
                   +L++ L    + L+S S    +  +  R     +++   + LRD L   +  
Sbjct: 105 YENWSANEILKSVLPADEEGLSSFSRIGHIVHLNLRDHLLPYKQLIGKVLRDKLPNCRTV 164

Query: 149 IQLIGRANKT-------KICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHML 199
           +      + T        IC + +Y  E        + +   E  F++   N  ++    
Sbjct: 165 VNKAASIDNTYRNFQLELICGEPEYQVET---KENGVPF---EFDFSKVYWNPRLST--- 215

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           E           D+L +++ G G FS+  A+   +VLA ++   S    ++N   N  + 
Sbjct: 216 EHERIVKLLQPNDVLYDVFAGVGPFSVPAAKKRCQVLANDLNPVSYHWLQHNAKRNKCLV 275

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           ++K+     +EF     RE    R ++     Y        P
Sbjct: 276 HIKMYNKDGREFILKELREDLLERWRNPAATPYSIHITMNLP 317


>gi|195127431|ref|XP_002008172.1| GI13347 [Drosophila mojavensis]
 gi|193919781|gb|EDW18648.1| GI13347 [Drosophila mojavensis]
          Length = 435

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 23/223 (10%)

Query: 91  MATIRLEPLLRAKLFQ-IDYLTSQSDQAIVTLIYHRLLDDAWRECAIR-LRDALHARKYQ 148
                   +L++ L +  + L+S S    +  +  R     +++     LRD L   +  
Sbjct: 105 YENWSANEILKSVLPENEEGLSSFSRIGHIVHLNLRDHLLPYKQLIGEVLRDKLPNCRTV 164

Query: 149 IQLIGRANKT-------KICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHML 199
           +      + T        IC + DY  E        + +   E  F++   N  ++    
Sbjct: 165 VNKAASIDNTYRNFQLELICGEPDYQVET---KENGVPF---EFDFSKVYWNPRLST--- 215

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           E           D+L +++ G G FS+  A+   +VLA ++   S +  ++N   N  + 
Sbjct: 216 EHERIVNILKPNDVLYDVFAGVGPFSVPAAKKRCKVLANDLNPVSYQWLQHNAKRNKCLT 275

Query: 258 NVKIVRMSSKEFTQAMRREREFNRL-KDIDIHSYRFKTIFVDP 299
           ++K+     +EF     RE    R         Y        P
Sbjct: 276 HIKMFNKDGREFILKDLREDLLERWRTSAAAEPYNIHITMNLP 318


>gi|330887863|gb|EGH20524.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 277

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAKVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNSHWFSALEGQQFDLIISNPP 185


>gi|307329692|ref|ZP_07608849.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
 gi|306884632|gb|EFN15661.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
          Length = 372

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +       +        GD+L+L CG G+ +L+ A    RV  V+ +   VE AR   
Sbjct: 29  PVVREAWAARLWGWLPERAGDVLDLGCGTGSLALLAAERGHRVTGVDRSPRMVELAR--- 85

Query: 252 AANHVNNVKIVRMSSKE 268
           A        ++   + E
Sbjct: 86  AKLGGTGATVLVGDAAE 102


>gi|297160961|gb|ADI10673.1| Methyltransferase type 11 [Streptomyces bingchenggensis BCW-1]
          Length = 247

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++  ++        G  L+L CG G  +L LA     V AV+++  ++  A        
Sbjct: 54  ENLASYLDRGLIASPGRALDLGCGPGRNALHLAAQGFEVDAVDLSSTAIAWAEDRAREAK 113

Query: 256 VNNVKIVRMSSKEFTQ 271
            ++++     +   T 
Sbjct: 114 ASSIRFHCGDAFALTD 129


>gi|296122426|ref|YP_003630204.1| methyltransferase small [Planctomyces limnophilus DSM 3776]
 gi|296014766|gb|ADG68005.1| methyltransferase small [Planctomyces limnophilus DSM 3776]
          Length = 393

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%)

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSS 266
            G++L+L C +  F +   RH     V+ V+ +K +VE A  N+  N + +   VR   +
Sbjct: 219 SGNMLDLCCYSAGFGMNALRHGEVTHVIGVDTSKIAVENATANVTRNGLADRYEVRHGDA 278

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            E     R                RF+TI +DPP+
Sbjct: 279 FEVLTEFRN------------QGVRFQTIVLDPPK 301


>gi|156551658|ref|XP_001600874.1| PREDICTED: similar to GA18057-PA [Nasonia vitripennis]
          Length = 1312

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 68/216 (31%), Gaps = 31/216 (14%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA-----ATKGIQGDLLELYCGN 220
           +  E L  +   +  +    +    N   N+  +E +            +  ++E+ CG 
Sbjct: 237 FGSETLDDSIGNVKIQLAPKA----NVWANLAGVEVLADVVTSYLVPTQKTTVIEIGCGT 292

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SL++A    +V+ V++ K  +  A      N + N   +    K     +       
Sbjct: 293 GLISLLIASKCQKVIGVDVQKE-IAEAEILSELNEIKNATFLTGKPKLVMSQI------- 344

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY---PHILYISCNPDSLCRDLSILST 337
              D  I + +   +       G     +  ++       I+ I+       R +  L+ 
Sbjct: 345 ---DKSIATSKAVAVINTNNAFGRSIEVISSLRQMSTLGRIVIITTLTKQAIRSILELTQ 401

Query: 338 --------THTIERLALFDQFPYTRHMECGVLLVRK 365
                        +  + D  P +   E  + + R+
Sbjct: 402 PADEIYGNPFIPIKACIVDTTPKSFGFEIVMSMERR 437


>gi|303230005|ref|ZP_07316779.1| methyltransferase domain protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515371|gb|EFL57339.1| methyltransferase domain protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 276

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +   L++       +L++  G G+F++  A+H   V A+E +K  V   + N    +V N
Sbjct: 57  VYAALSSILTPDSSMLDIGAGPGSFTIPFAQHIKSVTAIEPSKGMVTVLKENAKELNVEN 116

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           + I+    ++  Q    + +F+ L  I +  + F  ++   PR
Sbjct: 117 INIIEELVQDLPQDGSPDFQFD-LVAISLVLWMFPDVW---PR 155


>gi|297157652|gb|ADI07364.1| hypothetical protein SBI_04243 [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + +        +L++ CG G+ + +LA     V  V+++   V+ AR  + A  +     
Sbjct: 39  LESWMPPAPARVLDVGCGTGSLTHLLAAAGHHVTGVDLSPRMVDQARAKLTAAGLTG-TF 97

Query: 262 VRMSS------KEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +   +      ++   A+        L D      ++  
Sbjct: 98  LVGDAAQPPTGEDRFDALLCRHLLWTLPDPHAALRQWTA 136


>gi|163839486|ref|YP_001623891.1| 16S rRNA m2G1207 methyltransferase [Renibacterium salmoninarum ATCC
           33209]
 gi|162952962|gb|ABY22477.1| 16S rRNA m2G1207 methyltransferase [Renibacterium salmoninarum ATCC
           33209]
          Length = 205

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 21/116 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
             A      GDLL++ CG G  +L LA      R+ AV++ + S+     N AA  + NV
Sbjct: 55  AEAPAPASDGDLLDIGCGWGPIALTLALKSPQARIHAVDVNERSLALTAENAAALGLGNV 114

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++ +                    D    S RF+TI+ +PP     D    +++ +
Sbjct: 115 QVSQ-------------------PDELDPSIRFQTIWSNPPIRVGKDVLHHILRTW 151


>gi|110634437|ref|YP_674645.1| methyltransferase type 11 [Mesorhizobium sp. BNC1]
 gi|110285421|gb|ABG63480.1| Methyltransferase type 11 [Chelativorans sp. BNC1]
          Length = 258

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 10/134 (7%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +   V          +L+L CG G+ +  +A     V+A +++   +E      
Sbjct: 28  HAQGEDLQSLVARMAGKSGARVLDLGCGGGHVTFHIAPLVREVVAYDLSPEMLEVVGRTA 87

Query: 252 AANHVNNVKIVRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
               + N+   R  ++          A+      +  +D+D        +     + G  
Sbjct: 88  RERGLANIATARGVAESLPFEADSFDAVLSRFSAHHWRDLDAGLREAARVL----KPGGS 143

Query: 306 DATVGMVQAYPHIL 319
              +  V A   I+
Sbjct: 144 VIILDTVTAGVPII 157


>gi|261340149|ref|ZP_05968007.1| protein-(glutamine-N5) methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
 gi|288317664|gb|EFC56602.1| protein-(glutamine-N5) methyltransferase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 276

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV++   +V  A+ N+    
Sbjct: 98  LVEQALARLPEQSTAILDLGTGTGAIALALASERPDCSVTAVDLMPDAVALAQRNVQRLG 157

Query: 256 VNNVKIVR 263
           + NV +++
Sbjct: 158 LCNVTVLQ 165


>gi|60360398|dbj|BAD90443.1| mKIAA1393 protein [Mus musculus]
          Length = 410

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/239 (20%), Positives = 84/239 (35%), Gaps = 21/239 (8%)

Query: 77  MPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
           +  S  ++   +E+     + E +L+A L +   +TS    + V  I H  L D      
Sbjct: 78  LDVSPQLSQYNLELTYENFKSEEILKAVLPEGQDVTS--GFSRVGHIAHLNLRDHQLPFK 135

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--------VAGRTLIYRQIENSF 187
             +   +  +   I              R++  E L         V      Y   E  F
Sbjct: 136 HLIGQVMVDKNPGITSAVNKTSNIDNTYRNFQMEVLCGEENMLTKVRENNYTY---EFDF 192

Query: 188 TQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           ++   N  ++    E          GD+L +++ G G F++  AR    V A ++   S 
Sbjct: 193 SKVYWNPRLST---EHGRITELLNPGDVLFDVFAGVGPFAIPAARKNCTVFANDLNPESH 249

Query: 245 EAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +   +N   N V+  VK+  M  K+F Q   RE    RL            +   P ++
Sbjct: 250 KWLLHNCQLNKVDQKVKVFNMDGKDFIQGPVREELMLRLGLSAEAKPSVHIVMNLPAKA 308


>gi|325204980|gb|ADZ00434.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis M01-240355]
          Length = 242

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 38  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAEFVKGIDMAEQSLETARLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 98  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 143


>gi|294893292|ref|XP_002774399.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239879792|gb|EER06215.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 414

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 89/248 (35%), Gaps = 24/248 (9%)

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL-----FQID 108
           D  +   I F        ++  F   S  I     +M     L  +L A L     F+  
Sbjct: 63  DPKNNKIICFKADADLPKKVRNFGVISHEIVRGYAQMSTEEILRKILPANLEVPSSFESI 122

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLR------DALHARKYQIQLIGRANKTKICL 162
              +  +     L Y +++ D   +    ++        LH     ++L   A+      
Sbjct: 123 GHIAHFNLKNSHLPYKKVIGDVILDKNPAIKLVVTKVANLHNEFRTMELEVMASAD---- 178

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGN 220
             D  D   TV    + ++     F++   N+ +   M + +L         ++++ CG 
Sbjct: 179 GCDPTDFITTVKENGMQFKM---DFSKVYWNSRL-STMRQGLLEDLNSSNSVVVDMCCGV 234

Query: 221 GNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRER 277
           G F+++ A+    RV A ++   S +    N   N V +  + I     +EF + +  E 
Sbjct: 235 GAFAIMAAKKIGCRVYANDLNPESTKWCLENAKLNKVPSGLMTISTEDGREFVKRLVSEG 294

Query: 278 EFNRLKDI 285
            F+  KD 
Sbjct: 295 VFDEKKDF 302


>gi|125538276|gb|EAY84671.1| hypothetical protein OsI_06043 [Oryza sativa Indica Group]
          Length = 464

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 210 QGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSS 266
              +L+L C +G F+L  A+   + V+ ++ +  +++ A  NI  N ++   +  V+  +
Sbjct: 288 DQRVLDLCCYSGGFALNAAKGGANNVIGIDSSASALDLASKNIILNKLDTQRISFVKEDA 347

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             F +      E             +  + +DPP+       +      
Sbjct: 348 TAFMKGAISRNE------------VWDLVILDPPKLAPRKKVLQSASGM 384


>gi|220904265|ref|YP_002479577.1| type 11 methyltransferase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868564|gb|ACL48899.1| Methyltransferase type 11 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 255

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 198 MLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           ML           G  +L++ CG+G ++L LAR    V AV++A   +   R + AA  +
Sbjct: 36  MLRHATENGVDFNGKRILDVGCGSGMYTLRLARMAGSVTAVDVADEMLRLLREDAAAMGI 95

Query: 257 NNVKIVR 263
            N+  V 
Sbjct: 96  TNITTVC 102


>gi|322369359|ref|ZP_08043924.1| hypothetical protein ZOD2009_07719 [Haladaptatus paucihalophilus
           DX253]
 gi|320551091|gb|EFW92740.1| hypothetical protein ZOD2009_07719 [Haladaptatus paucihalophilus
           DX253]
          Length = 321

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKI 261
           +A          +++ G G F +  A+    V+  ++   +++    N   N V + V  
Sbjct: 163 VAEQVEPDERAFDMFAGVGPFVIPFAKRGATVVGADVNDVAIDYLNENARRNGVEDRVTA 222

Query: 262 VRMSSKEFTQAMRREREFNRL 282
           +    +E   A   E   +RL
Sbjct: 223 ICGDVRE--TATEYENWADRL 241


>gi|304397560|ref|ZP_07379437.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Pantoea sp. aB]
 gi|304354732|gb|EFM19102.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Pantoea sp. aB]
          Length = 276

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 23/163 (14%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     + Y+T +S   ++      L D+   +      ++L AR+ + + +       +
Sbjct: 22  RDAEILLGYVTGKSRSWLIAFDETVLSDEQLAQL-----NSLLARRARGEPVAH-----L 71

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
             +R++    L V   TLI R                ++E  LA        +L++  G 
Sbjct: 72  VGEREFWSLPLRVTDATLIPRPD-----------TELLVEQALAHLPATPSTILDMGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           G  +L LA  R   +V  V+  + +VE A  N     ++N + 
Sbjct: 121 GAIALALASERPDCQVTGVDRIQAAVELAGSNAQQLSLSNTRF 163


>gi|258509264|ref|YP_003172015.1| 16S rRNA m(2)G 1207 methyltransferase [Lactobacillus rhamnosus GG]
 gi|257149191|emb|CAR88164.1| 16S rRNA m(2)G 1207 methyltransferase [Lactobacillus rhamnosus GG]
 gi|259650546|dbj|BAI42708.1| 16S rRNA methylase [Lactobacillus rhamnosus GG]
          Length = 198

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 21/121 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
             ++  VLA T    G +L++  G G   L LA+HF   +V   ++ + ++  A+ N A 
Sbjct: 46  RVLIATVLAETLP-DGPILDVGAGYGPIGLALAKHFPNRQVTMSDVNERALALAKQNAAD 104

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + NV I+  S                    D    +F  +  +PP         G++ 
Sbjct: 105 NGITNVSIIESSM------------------YDSIDDQFAVVVTNPPIRAGKAIVSGILS 146

Query: 314 A 314
            
Sbjct: 147 G 147


>gi|298208825|ref|YP_003717004.1| hypothetical protein CA2559_11313 [Croceibacter atlanticus
           HTCC2559]
 gi|83848752|gb|EAP86621.1| hypothetical protein CA2559_11313 [Croceibacter atlanticus
           HTCC2559]
          Length = 411

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 14/100 (14%)

Query: 213 LLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAAN-HVNNVKIVRMSSKEFT 270
           +L+++   G FS+  LA+    V +++I+  ++  A+ N   N H     I+   +    
Sbjct: 241 VLDVFSYAGGFSVHALAKGAKDVTSLDISAQALAVAKENATLNDHKGTHHIIEGDA---- 296

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                   F +L+ +   + +F  + +DPP        V 
Sbjct: 297 --------FEKLQQLIQKNRKFDVVVIDPPSFAKKATDVE 328


>gi|108804026|ref|YP_643963.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108765269|gb|ABG04151.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 214

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 9/126 (7%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
               +   M+E   A   G +  +LE+  G G  + +LAR    V +VE      EAAR 
Sbjct: 58  TQPSLVARMVE---ALGLGGEERVLEIGTGYGFQTALLARLCAFVWSVERHPDVAEAARQ 114

Query: 250 NIAANHVNNVKIVRMS------SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           N++ + V+N ++V          +    A+     F R+ +            V P   G
Sbjct: 115 NLSRHGVSNARVVVGDGTRGLPGEAPFDAILVSAAFTRVPEPLARQLAPGGRLVQPVGPG 174

Query: 304 LDDATV 309
            ++  V
Sbjct: 175 GEEEVV 180


>gi|257388443|ref|YP_003178216.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257170750|gb|ACV48509.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 210

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 4/121 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V  A       +L+L  G G  +L LA     V+  +I++  +E AR       ++NV  
Sbjct: 36  VRHAAPAADDVVLDLGTGTGAIALPLADAAAEVVGRDISEGMLEQARTKATERGIDNVSF 95

Query: 262 ----VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                R  S +    +          D +        I    PR  +    +   +  P 
Sbjct: 96  GEGRFREPSVDREVDVVTSNFAMHHLDDEAKREAIDAIAALEPRRFVLGDVMFFDEPDPS 155

Query: 318 I 318
           I
Sbjct: 156 I 156


>gi|113868832|ref|YP_727321.1| protein-L-isoaspartate carboxylmethyltransferase [Ralstonia
           eutropha H16]
 gi|113527608|emb|CAJ93953.1| Protein-L-isoaspartate carboxylmethyltransferase [Ralstonia
           eutropha H16]
          Length = 217

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           ++LE+  G+G  + +LA     VL V+I    VE AR N+A   V NV +   ++ +
Sbjct: 80  NVLEIGAGSGYMAALLANRARHVLTVDIVPELVELARTNLANAGVTNVDVAEGNAAD 136


>gi|84995642|ref|XP_952543.1| hypothetical protein [Theileria annulata strain Ankara]
 gi|65302704|emb|CAI74811.1| hypothetical protein, conserved [Theileria annulata]
          Length = 1272

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 213  LLELYCGNGNFSLVLARH-----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +++ +CG G F++ + +        RVL V++   ++E    N  AN ++  +I      
Sbjct: 1065 IVDFFCGIGYFTIPILKFTDEKIVSRVLCVDVNPTAIEYLEENAKANQIDLSRIEV--RV 1122

Query: 268  EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
            +  Q   +   F  +   D          +   R G   A   + + Y  ILYI
Sbjct: 1123 DNCQNFGKTYGFEYIDKADKILLG----LLPSSRVGWIPAMAALNKKYGGILYI 1172


>gi|330988604|gb|EGH86707.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 277

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAKVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNSHWFSALEGQQFDLIISNPP 185


>gi|330823523|ref|YP_004386826.1| protein-(glutamine-N5) methyltransferase [Alicycliphilus
           denitrificans K601]
 gi|329308895|gb|AEB83310.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Alicycliphilus denitrificans K601]
          Length = 281

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 22/125 (17%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNI 251
              +++W L     +    + +L  G+G  +L L  AR   RVLAV+ +  ++  AR N 
Sbjct: 98  TEILVDWALELLAPLPAPRVADLGTGSGAIALALQHARPDARVLAVDASAGALAVARANA 157

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +  V+ V+                     +   +  F  I  +PP     D  +  
Sbjct: 158 ERLGLP-VRFVQAD------------------WLAGIAGPFDAIVSNPPYIPAQDPHLAA 198

Query: 312 VQAYP 316
           +   P
Sbjct: 199 LAHEP 203


>gi|290769838|gb|ADD61611.1| putative protein [uncultured organism]
 gi|291542958|emb|CBL16068.1| Predicted SAM-dependent methyltransferases [Ruminococcus bromii
           L2-63]
          Length = 287

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 32/175 (18%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGI-NVHMLEWVLAA----TKGIQGDLLELYCGNG 221
           V +R TV    L++      F   + G+     + W  AA     +     +L L+   G
Sbjct: 70  VPDRWTVNYGDLVFNIKPMGFK--HTGVFPEQAVNWDFAAEKIKNENRPLKILNLFGYTG 127

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREF 279
             +L        V  V+ +K  V+ A+ N A++ + +  V+ +     +F Q     RE 
Sbjct: 128 CATLACMNAGATVCHVDASKGMVQWAKENAASSGIADRPVRWLVDDCVKFVQ-----REI 182

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSG---------LDDATVGMVQAYPHILYISCNP 325
            R         R+  I +DPP  G         L++    +V     +L  S NP
Sbjct: 183 RR-------GNRYDGIIMDPPSYGRGPGGEVWKLEEQLYSLVTLCKQVL--SDNP 228


>gi|16077174|ref|NP_387987.1| ribosomal RNA methyltransferase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221307918|ref|ZP_03589765.1| hypothetical protein Bsubs1_00550 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312239|ref|ZP_03594044.1| hypothetical protein BsubsN3_00545 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317173|ref|ZP_03598467.1| hypothetical protein BsubsJ_00550 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321436|ref|ZP_03602730.1| hypothetical protein BsubsS_00550 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|586914|sp|P37872|YBXB_BACSU RecName: Full=Uncharacterized protein ybxB; AltName: Full=ORF23;
           AltName: Full=P23
 gi|402362|gb|AAB00971.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|2632373|emb|CAB11882.1| ribosomal RNA methyltransferase [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 201

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             ++G +L++ CG G   L LA  F    +  +++ + +VE +  N   N + NVKI + 
Sbjct: 56  PEVEGGILDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQNGITNVKIYQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYR 291
               F+     +   + L +  I + +
Sbjct: 116 DL--FSNVDSAQTFASILTNPPIRAGK 140


>gi|7476090|pir||T09985 protoporphyrinogen oxidase homolog - Mycobacterium leprae
 gi|699335|gb|AAA63096.1| hemK [Mycobacterium leprae]
          Length = 191

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 24/155 (15%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
           LLD    E   R  DA+ AR  ++ L       +  +         TV+   ++     +
Sbjct: 45  LLDTPGEEFFRRYSDAVAARSRRVPL-------QHLIG--------TVSFGPVVLHVGPD 89

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPS 243
            F  P       +L WV+A     +  +++   G+G  ++ LA H    RV+ ++ +  +
Sbjct: 90  VFI-PRPE-TEAILAWVMAQRLPERPVIVDACTGSGALAVALAHHRPAARVIGIDDSDSA 147

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           ++ AR N        V+ VR      T A+  E +
Sbjct: 148 LDYARRNAEG---TAVECVRADVT--TPALLPELD 177


>gi|298485682|ref|ZP_07003761.1| modification methylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298159708|gb|EFI00750.1| modification methylase [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
          Length = 277

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELAPAFAPAKVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N  +                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAHV-----------------LNSHWFSALEGRQFDLIISNPP 185


>gi|78044707|ref|YP_359098.1| putative methyltransferase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996822|gb|ABB15721.1| putative methyltransferase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 235

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               LL+  CG GN++L LA     V  ++I    +  A+    A   NNVK +      
Sbjct: 30  PAKKLLDAGCGTGNYALSLAERGFEVTGIDINPEFISLAQK--KARGKNNVKFLTADLTA 87

Query: 269 FTQAMRREREF 279
           F      E  F
Sbjct: 88  FHLKESFEGIF 98


>gi|20089502|ref|NP_615577.1| 1-methylguanosine tRNA methyltransferase [Methanosarcina
           acetivorans C2A]
 gi|19914410|gb|AAM04057.1| 1-methylguanosine tRNA methyltransferase [Methanosarcina
           acetivorans C2A]
          Length = 336

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                  +++++ G G +S++LA+     +V+A++    +V   + NI+ N   N++ + 
Sbjct: 180 WVKEGDTVVDMFAGVGPYSILLAKSNKPSKVVAIDKNPDAVHYLKENISLNSAKNIEAIE 239

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRF--KTIFVDPPRSGLD 305
             ++E  +        + + ++  ++Y F    + +  P   + 
Sbjct: 240 GDAREEAERFAG-TAAHVIMNLPHNAYEFLDSAVLLTKPAGIIH 282


>gi|254168253|ref|ZP_04875099.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|197622762|gb|EDY35331.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
          Length = 311

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNV 259
           W +         + +++ G G FS+++A++   ++ A +I   ++E    NI  N V  +
Sbjct: 153 WRVVEKVKDGETIFDMFAGCGPFSILIAKYKKVKIYACDINPYAIEYLEENIKINKVEGI 212

Query: 260 KIVRMSSKEFTQAMRREREFNRLK 283
             +   +++  + ++ +R    L 
Sbjct: 213 TPILGDARDVAKEIKADRIIMNLP 236


>gi|156741118|ref|YP_001431247.1| methyltransferase small [Roseiflexus castenholzii DSM 13941]
 gi|156232446|gb|ABU57229.1| methyltransferase small [Roseiflexus castenholzii DSM 13941]
          Length = 198

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L+L CG G   +VLAR F   RV+ V+    +V  AR+N A N   NV+++     E+
Sbjct: 57  TILDLGCGCGVIGIVLARWFPQARVILVDRDLLAVRYARHNAALNQTPNVEVIGSVGFEY 116

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +  +   + +              + P
Sbjct: 117 VPDIPFDLIVSNIPAKIGDEAIEHEFILAP 146


>gi|114621593|ref|XP_519945.2| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Pan
           troglodytes]
          Length = 448

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 108 CLEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVA 165

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
           + L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 166 LALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSF------ 219

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 220 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 277

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +  N   +  +I    +++   +   +R    L       +      +     G+
Sbjct: 278 LEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGI 332


>gi|56697367|ref|YP_167735.1| hypothetical protein SPO2520 [Ruegeria pomeroyi DSS-3]
 gi|56679104|gb|AAV95770.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 403

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV-K 260
            A   G    +L+++   G F+L  LA      LAV+ + P++  A     A+ +    +
Sbjct: 223 AARLAGQGTRVLDVFSHVGGFALAMLAGGAGSALAVDGSAPALALAEQGALASGLAGRFE 282

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
             +  + +   A+  E E             F  +  DPP        +   ++AY  + 
Sbjct: 283 TRQGDAFDVLTALAEEGE------------TFDVVICDPPAFAPSKQALDAGLRAYERVA 330


>gi|46198473|ref|YP_004140.1| ribosomal RNA small subunit methyltransferase C [Thermus
           thermophilus HB27]
 gi|46196095|gb|AAS80513.1| ribosomal RNA small subunit methyltransferase C [Thermus
           thermophilus HB27]
          Length = 375

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 21/143 (14%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNFSLVLARHFD 232
              +  +   F+         +L   L    G +G     +L+L  G G  +L LAR   
Sbjct: 197 EYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA 256

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE    SV + +  + AN +      +    +  +A+  E              RF
Sbjct: 257 EVVGVEDDLASVLSLQKGLEANALK----AQALHSDVDEALTEEA-------------RF 299

Query: 293 KTIFVDPPRSGLDDATVGMVQAY 315
             I  +PP        + + QA+
Sbjct: 300 DIIVTNPPFHVGGAVILDVAQAF 322


>gi|320637364|gb|EFX07171.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. G5101]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LAR      + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALARERPDCEITAVDRMPDAVALAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++ +A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFRALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|307546412|ref|YP_003898891.1| SAM-dependent methyltransferase [Halomonas elongata DSM 2581]
 gi|307218436|emb|CBV43706.1| K06969 putative SAM-dependent methyltransferase [Halomonas elongata
           DSM 2581]
          Length = 398

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 14/99 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L+L+   G + +   A     VL V+ ++ +++    N   N +   V +    + E
Sbjct: 223 KRVLDLFSYVGGWGVQAAAHGASEVLCVDASERALQGVAENAELNGLQERVAVGEGDAFE 282

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
              A++ + E            RF  + +DPP       
Sbjct: 283 ALAALKADDE------------RFDVVILDPPAFIKKRK 309


>gi|296170241|ref|ZP_06851834.1| protein-(glutamine-N5) methyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895117|gb|EFG74835.1| protein-(glutamine-N5) methyltransferase [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 282

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 20/131 (15%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH- 230
           T A   +        F          +L WV A     +  +++L  G+G  ++ LA   
Sbjct: 75  TAAFGPVSLHVGPGVF--VPRPETEALLAWVTAQPLPARPVIVDLCTGSGALAVALAHEY 132

Query: 231 -FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              R++A++++  ++  AR N A            ++ E  QA   E     L ++D   
Sbjct: 133 PAARIVAIDVSASALGYARRNAA-----------GTAVELVQADVAEPGL--LAELD--- 176

Query: 290 YRFKTIFVDPP 300
                +  +PP
Sbjct: 177 GGVDAVVANPP 187


>gi|268316279|ref|YP_003289998.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
 gi|262333813|gb|ACY47610.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
          Length = 246

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A   V ++E ++    G   ++L++ CG G  + VLAR   RV  +++A+ +++ AR   
Sbjct: 25  AEQVVDLIERLVRPAPGS--EILDVGCGRGRHARVLARRGYRVTGIDVAERALQIARERA 82

Query: 252 AANHVNNVKIVRMSSKE 268
            A  +++V+ +R   +E
Sbjct: 83  EAEGLHHVRFLRHDMRE 99


>gi|251796228|ref|YP_003010959.1| PUA domain containing protein [Paenibacillus sp. JDR-2]
 gi|247543854|gb|ACT00873.1| PUA domain containing protein [Paenibacillus sp. JDR-2]
          Length = 455

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKE 268
             +LE +   G+F+L   +    +V  +++++ +++ AR N+  N   + V+ V   + +
Sbjct: 259 ATVLECFAHTGSFTLHACKYGAKKVTCLDVSEHAIDTARRNVERNGFADRVEFVVADAFD 318

Query: 269 FT---------QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPHI 318
           +          +A R     +  K +      +  + +DPP       A  G  + Y  I
Sbjct: 319 YLRTQVKGVEERAERSRAGADTSKPLSGGGRTWDVVILDPPAFAKTKSAVAGACRGYKDI 378


>gi|167751821|ref|ZP_02423948.1| hypothetical protein ALIPUT_00063 [Alistipes putredinis DSM 17216]
 gi|167660062|gb|EDS04192.1| hypothetical protein ALIPUT_00063 [Alistipes putredinis DSM 17216]
          Length = 282

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 25/122 (20%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEI 239
            Q   G+         ++ W+  +       +L++  G+G  ++ LAR     RV AV+I
Sbjct: 83  FQVREGVLIPRPETEELVRWIAESPAPDNPAVLDVGTGSGCIAVTLARLIPGARVTAVDI 142

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSS-KEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           ++ ++  AR N        V   +  +  E     R                +F  I  +
Sbjct: 143 SEKALSIARENARRLDAE-VDFRQGDALGELFPGQRE---------------QFDLIVSN 186

Query: 299 PP 300
           PP
Sbjct: 187 PP 188


>gi|156937113|ref|YP_001434909.1| methyltransferase [Ignicoccus hospitalis KIN4/I]
 gi|156566097|gb|ABU81502.1| methyltransferase [Ignicoccus hospitalis KIN4/I]
          Length = 323

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 101/278 (36%), Gaps = 33/278 (11%)

Query: 57  DLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS-- 114
           D  + + +   K  + +   + G  ++   +        L+  L  +L + D+  S S  
Sbjct: 25  DQNYKIKEVGDKVLIPVKAPVEGYEVVEIELERRERPKSLKECLEERLGKGDWPRSFSVV 84

Query: 115 -DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC----LDRDYVDE 169
            D A+++L    LL  + +E    ++ +    K     +G   + ++     L  +   E
Sbjct: 85  GDLAVISLKDEELLKYS-KELWECIKASQKRVKSLWAKLGTEGEHRVAKLVHLGGEKRTE 143

Query: 170 RLTVAGRTLIYRQ-IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
            L      LI++  +  ++   N  ++    E   A   G    +L+++ G G F + +A
Sbjct: 144 TL-YKEYGLIFKVDLAKAY--VNPSLSEEHREVSEAVRDGE--RVLDMFAGVGFFPIHIA 198

Query: 229 -RHFDRVLAVEIAKPSVEAARYNIAANHVN---NVKIVRMSSKEFTQAMRREREFNRLKD 284
            +    V+A+++   +V+    NI  N       +  +   + E T+  +          
Sbjct: 199 SKRTATVVAIDLNPNAVKLMIDNIKLNKKKLRGTIIPIMGDASEVTKFFK---------- 248

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI-LYI 321
                  F  + ++ P    +        A   I LY+
Sbjct: 249 ----DKSFDVVIMNLPHKAEEFLNEAKRLAKRAILLYV 282


>gi|7021077|dbj|BAA91374.1| unnamed protein product [Homo sapiens]
          Length = 448

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 108 CLEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVA 165

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
           + L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 166 LALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSF------ 219

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 220 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 277

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +  N   +  +I    +++   +   +R    L       +      +     G+
Sbjct: 278 LEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGI 332


>gi|289647288|ref|ZP_06478631.1| hemK protein [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELAPAFAPAKVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNSHWFSALEGQQFDLIISNPP 185


>gi|288870960|ref|ZP_06115918.2| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288865256|gb|EFC97554.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 505

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           RL     +    +L +     +++I+LI     +   L + +    L     +     I 
Sbjct: 279 RLSSKIEKLSGRKLINTTSNYEFEIRLIENKEGSCNVLIKLF---TLKDERFSYRKEVIP 335

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL--VLARHFDRVLAVEIAKP 242
            S    NA + V +              +L+ +CG G   +    A     +  ++I + 
Sbjct: 336 TSIKAVNAALTVKL----AQPYMKEGAQVLDPFCGVGTMLIERHKAVKAGTMYGLDILEE 391

Query: 243 SVEAARYNIAANH 255
           ++E AR N AA  
Sbjct: 392 AIEKARENTAAAG 404


>gi|257064807|ref|YP_003144479.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit,precorrin-6Y C5,15-methyltransferase
           (decarboxylating), CbiT subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256792460|gb|ACV23130.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit,precorrin-6Y C5,15-methyltransferase
           (decarboxylating), CbiT subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 451

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 199 LEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254
           +  V  +  GI  D  + ++  G G+ ++  AR     +V AVE+   +VE  R N++  
Sbjct: 281 IRAVAVSKLGIAPDSVVWDVGSGTGSITVACARAACAGQVHAVEMRPEAVELTRRNVSKF 340

Query: 255 HVNNVKIVRMSSKEFTQAMRRER 277
            + NV + +  + E    +    
Sbjct: 341 GLGNVTVTQGRAPEALAGLPAPD 363


>gi|257482008|ref|ZP_05636049.1| hemK protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELAPAFAPAKVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNSHWFSALEGQQFDLIISNPP 185


>gi|254822596|ref|ZP_05227597.1| hypothetical protein MintA_21884 [Mycobacterium intracellulare ATCC
           13950]
          Length = 222

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L       GD+L+  CG    SL LA      + ++ +  ++E AR   A   + +   
Sbjct: 32  ALIEAGKFHGDVLDAGCGEAAVSLYLAERGFTTVGLDQSPTAIELAREKAARRGLTSASF 91

Query: 262 VRMSSKEFT 270
                  FT
Sbjct: 92  DVADISAFT 100


>gi|288555681|ref|YP_003427616.1| ribosomal protein L11 methyltransferase [Bacillus pseudofirmus OF4]
 gi|288546841|gb|ADC50724.1| ribosomal protein L11 methyltransferase [Bacillus pseudofirmus OF4]
          Length = 310

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 62/150 (41%), Gaps = 16/150 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L +      +++++  G+G  S+  A+    RV+ +++ + +V++A  N+  N V++ 
Sbjct: 166 QALESVMQGGEEVIDVGTGSGVLSIAAAKLGAKRVIGLDLDQVAVDSAALNVELNQVHDT 225

Query: 260 KIVR-MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
             VR  +  E           N L ++ +   +     + P   G    T G+++     
Sbjct: 226 VTVRQGNLLEQIDGSYDLVVANILAEVIVQFVQDAAAILKP---GGAFITSGIIKRKKQE 282

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFD 348
           +          +D S++S   TI+ +   D
Sbjct: 283 V----------KD-SLVSAGFTIDEVIEMD 301


>gi|289581698|ref|YP_003480164.1| hypothetical protein Nmag_2032 [Natrialba magadii ATCC 43099]
 gi|289531251|gb|ADD05602.1| protein of unknown function Met10 [Natrialba magadii ATCC 43099]
          Length = 409

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMS 265
                 + +++ G G F+L +AR   +V A EI   +      N   N V + V      
Sbjct: 226 CEPDERVFDMFAGIGYFTLPMARAGAQVTATEINPTAFRYLLENAMLNDVGDRVDAYMSD 285

Query: 266 SKEFTQAMRRER 277
            ++ T  +  +R
Sbjct: 286 CRDLTSEVAADR 297


>gi|221201094|ref|ZP_03574134.1| glycosyl transferase, group 1 [Burkholderia multivorans CGD2M]
 gi|221206454|ref|ZP_03579467.1| glycosyl transferase, group 1 [Burkholderia multivorans CGD2]
 gi|221173763|gb|EEE06197.1| glycosyl transferase, group 1 [Burkholderia multivorans CGD2]
 gi|221178944|gb|EEE11351.1| glycosyl transferase, group 1 [Burkholderia multivorans CGD2M]
          Length = 1714

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            HM  +++A        +L++ CG G  S  L+R    V+ V+I+  ++  A+ +   + 
Sbjct: 43  EHMHRYLIARKLAAGLHVLDIACGEGYGSYALSRTAASVVGVDISDDAIRHAQ-SAYGDK 101

Query: 256 VNNVKIVRMSSKEFTQA 272
            NN+  V  S+ +   A
Sbjct: 102 ANNLTFVVGSAADIPLA 118


>gi|158522589|ref|YP_001530459.1| methyltransferase type 11 [Desulfococcus oleovorans Hxd3]
 gi|158511415|gb|ABW68382.1| Methyltransferase type 11 [Desulfococcus oleovorans Hxd3]
          Length = 217

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 19/146 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F  P    N  M+             +L++ CG G  +L LA     V  V++++  +  
Sbjct: 18  FFDPVETANRQMI----LDFVPEGSTVLDVGCGTGRLALELAAKCRHVTGVDLSRRMLAY 73

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                    V N+      S    Q + R  +   +  + +H                  
Sbjct: 74  CERQKNKRGVKNLDFAFGDSTRLAQDLDRSYDVA-VTSLALHEMGPDE---------RHA 123

Query: 307 ATVGMVQAYPHILYISCN----PDSL 328
               M      ++ IS +    P +L
Sbjct: 124 TVRAMAAVADRLV-ISDHTVPQPATL 148


>gi|67971752|dbj|BAE02218.1| unnamed protein product [Macaca fascicularis]
          Length = 505

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 108 CLEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLLLLSEDCFQANQWKNLGPELWETVA 165

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 166 SALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGILYKFDVTQCMFSF------ 219

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 220 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 277

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +  N   +  +I    +++   +   +R    L       +      +     G+
Sbjct: 278 LEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGI 332


>gi|109898485|ref|YP_661740.1| PUA domain-containing protein [Pseudoalteromonas atlantica T6c]
 gi|123171220|sp|Q15TV2|RLMI_PSEA6 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|109700766|gb|ABG40686.1| 23S rRNA m(5)C-1962 methyltransferase / SAM-dependent
           methyltransferase [Pseudoalteromonas atlantica T6c]
          Length = 395

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 38/163 (23%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFS-LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
             +AA      D+L  +C  G F    LA     V +++++  ++E A+ N+  N +++ 
Sbjct: 211 RAIAAQYAKDRDVLNCFCYTGTFGSYALAAGACSVTSLDVSDLALETAKRNVDINQLDSS 270

Query: 259 -VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
             + +                F  L+D    S +F  I +DPP+     A++        
Sbjct: 271 KCEFINHDV------------FQALRDYKAQSKQFSQIILDPPKFVDSKASLNRACRG-- 316

Query: 318 ILYISCNPDSLCRDLSILS----------TTHTIERLALFDQF 350
             Y         +D+++L+           T +   L  FD F
Sbjct: 317 --Y---------KDINMLAMQIMAPGGILATFSCSGLMPFDLF 348


>gi|297300061|ref|XP_001101713.2| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Macaca
           mulatta]
          Length = 505

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 108 CLEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLLLLSEDCFQANQWKNLGPELWETVA 165

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 166 SALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGILYKFDVTQCMFSF------ 219

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 220 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 277

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +  N   +  +I    +++   +   +R    L       +      +     G+
Sbjct: 278 LEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGI 332


>gi|86138631|ref|ZP_01057204.1| hypothetical protein MED193_22326 [Roseobacter sp. MED193]
 gi|85824691|gb|EAQ44893.1| hypothetical protein MED193_22326 [Roseobacter sp. MED193]
          Length = 408

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 15/120 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            A      GD+L+++   G F L + A     V  V+ +  +++ A     A+   +  +
Sbjct: 227 AARLVPQGGDVLDVFSHVGGFGLAMRAAGAGTVTCVDGSSAALDLAGQGAQASGFGDSFM 286

Query: 262 VR-MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
            R   + E   A+  E               F  +  DPP        +   ++AY  I 
Sbjct: 287 ARQGDAFEQLAALAEE------------GRSFDVVICDPPAFAPSKQALEAGLRAYERIA 334


>gi|194749191|ref|XP_001957023.1| GF20072 [Drosophila ananassae]
 gi|190624305|gb|EDV39829.1| GF20072 [Drosophila ananassae]
          Length = 435

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 22/222 (9%)

Query: 91  MATIRLEPLLRAKL-FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR-LRDALHARKYQ 148
                   +L++ L  + + LTS S    +  +  R     +++   +   D L   +  
Sbjct: 105 YDNWSANEILKSVLPAEEEGLTSYSRIGHIVHLNLRDHLLPYKQLIGQVFLDKLPNCRTV 164

Query: 149 IQLIGRANKT-------KICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHML 199
           +      + T        IC + DY  E        + +   E  F++   N  ++    
Sbjct: 165 VNKAATIDNTYRNFQLELICGEEDYQVET---KENGVPF---EFDFSKVYWNPRLSTEH- 217

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           E ++ A     GD+L +++ G G FS+  A+    VLA ++   S +  ++N   N  ++
Sbjct: 218 ERIVKALNA--GDVLYDVFAGVGPFSVPAAKKRCHVLANDLNPVSFQWLQHNAKRNKCLS 275

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           ++++     ++F     +     RL + D  SY        P
Sbjct: 276 HIQMFNKEGRQFILEELKNDLQKRLLETDTTSYSIHITMNLP 317


>gi|157388919|ref|NP_060426.2| tRNA wybutosine-synthesizing protein 2 homolog [Homo sapiens]
 gi|74726289|sp|Q53H54|TYW2_HUMAN RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|62897013|dbj|BAD96447.1| hypothetical protein FLJ20772 variant [Homo sapiens]
 gi|119612468|gb|EAW92062.1| tRNA methyltranferase 12 homolog (S. cerevisiae) [Homo sapiens]
          Length = 448

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 108 CLEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVA 165

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
           + L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 166 LALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSF------ 219

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 220 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 277

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +  N   +  +I    +++   +   +R    L       +      +     G+
Sbjct: 278 LEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGI 332


>gi|18977787|ref|NP_579144.1| met-10+ protein [Pyrococcus furiosus DSM 3638]
 gi|18893532|gb|AAL81539.1| met-10+ protein [Pyrococcus furiosus DSM 3638]
          Length = 333

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 40/87 (45%), Gaps = 1/87 (1%)

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E +       +G+++ +++ G G +S++L+R    V A +I   +++    NI  N   N
Sbjct: 173 ERMRVFNMAKEGEVVFDMFAGVGPYSILLSRKAKLVFACDINPWAIKYLEENIRLNKSFN 232

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDI 285
           V  +    ++ +  ++ +R    L   
Sbjct: 233 VIPILGDVRKVSGLIKADRIIMNLPKF 259


>gi|326437554|gb|EGD83124.1| Tgs1 protein [Salpingoeca sp. ATCC 50818]
          Length = 821

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 14/94 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           L++ +CG G  ++  AR  DRV+A++I    +   R+N     V + ++ +     E   
Sbjct: 635 LVDGFCGVGGSAIQFARTCDRVIAIDIDPNKINYCRHNARIYGVEDKIEFITGDFFEVLP 694

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            +R   E                +F+ PP  G D
Sbjct: 695 RLRARMEI-------------DVVFLSPPWGGPD 715


>gi|255505162|ref|ZP_05344833.3| hydrogenase-4, F subunit [Bryantella formatexigens DSM 14469]
 gi|255269369|gb|EET62574.1| hydrogenase-4, F subunit [Bryantella formatexigens DSM 14469]
          Length = 380

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 15/111 (13%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L+ +   G+F+L   A     VL V+ ++  VE A  N   N + + VK V      
Sbjct: 204 ARVLDCFTHTGSFALNAGAAGAAEVLGVDASQTGVEQAELNARLNGLEDRVKFVCRDV-- 261

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
                     F  L +++     F  + +DPP       +    V+ Y  I
Sbjct: 262 ----------FELLPELEEKGETFDLVILDPPAFTKSRSSVKNAVKGYREI 302


>gi|320181781|gb|EFW56691.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella boydii ATCC 9905]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 26/223 (11%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     ++Y+T +    ++     +L D+  ++      DAL AR+   + +        
Sbjct: 22  RDAEILLEYVTGRGRTFVLAFGETQLTDEQLQQL-----DALLARRRTGEPVAHLTGQ-- 74

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
              R++    L V+  TLI R                ++E  L         +L+L  G 
Sbjct: 75  ---REFWSLPLFVSPATLIPRPD-----------TECLVEQALERLPEQPCRILDLGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G  +L LA  R    + AV+    +V  A+ N     + N+ I++    ++  A+  ++ 
Sbjct: 121 GAIALALASERPDCEITAVDRMPDAVALAQRNAQHLAIKNIHILQ---SDWFSALAGQQF 177

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
              + +      +   +     R     A V        I++I
Sbjct: 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHI 220


>gi|299756265|ref|XP_001829211.2| tRNA (guanine-N(1)-)-methyltransferase [Coprinopsis cinerea
           okayama7#130]
 gi|298411598|gb|EAU92537.2| tRNA (guanine-N(1)-)-methyltransferase [Coprinopsis cinerea
           okayama7#130]
          Length = 457

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 72/207 (34%), Gaps = 22/207 (10%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR-----------ECAIRLR 139
                 + +L++ L +     + S  A+V  I H  L++ +            E   R+R
Sbjct: 111 YNYWTADEILQSFLPEELREGAPSGFAMVGHIAHLNLNEEYLPYKYIIGQLILEKNNRVR 170

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVH 197
             ++                +  + DYV E      R          FT+   N+ ++  
Sbjct: 171 TVVNKINSIDTQFRFFKMELLAGEPDYVVEHHESDCR------FMFDFTKVYWNSRLHTE 224

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
             + ++   +  +  + +++ G G F++   +    VLA ++   S +    N   N V+
Sbjct: 225 H-DRLIQVFQPEE-VVADVFAGVGPFAIPAGKKGCGVLANDLNPESYKYLAINAKNNRVD 282

Query: 258 N-VKIVRMSSKEFTQAMRREREFNRLK 283
           + VK      +EF Q          L 
Sbjct: 283 DTVKAFCEDGREFIQKSVSRLWEEPLP 309


>gi|297156229|gb|ADI05941.1| hypothetical protein SBI_02820 [Streptomyces bingchenggensis BCW-1]
          Length = 239

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 53/152 (34%), Gaps = 20/152 (13%)

Query: 179 IYRQIENSFTQPNAGINVHMLEW-------------VLAATKGIQGDLLELYCGNGNFSL 225
            YRQ   S+ Q  +      + W             +LA        + +L CGNG  + 
Sbjct: 6   RYRQAWESYWQNTSDAPGEAI-WDADPSLSAIPHLALLAPHADATLPIADLGCGNGTQTR 64

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            LA  F R + V+++  ++E AR        +  K+        T   R      RL D+
Sbjct: 65  YLATRFPRAIGVDLSHAAIEHARR------ADTEKVAEFEQLSLTDTARVRELHERLGDV 118

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +++          P R  + +A   ++     
Sbjct: 119 NVYLRAVIHQSDAPDRPPVAEAVATLLGRRGR 150


>gi|227488104|ref|ZP_03918420.1| possible methyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227541501|ref|ZP_03971550.1| possible methyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227091966|gb|EEI27278.1| possible methyltransferase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227182783|gb|EEI63755.1| possible methyltransferase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 190

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 15/109 (13%)

Query: 212 DLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L+ G+G   L  A      V+ VE    +    R N  A  +N V +    +  + 
Sbjct: 46  RVLDLFAGSGALGLEAASRGAEMVVLVESNPKAAAICRDNAKAVGINGVFVEETKASTYV 105

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
            +  RE               F  +  DPP     +    +V+A   +L
Sbjct: 106 ASAPRE--------------HFDMVLADPPYDLAPETVDEIVEALRPLL 140


>gi|218549097|ref|YP_002382888.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia fergusonii ATCC 35469]
 gi|218356638|emb|CAQ89264.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia fergusonii ATCC 35469]
 gi|325497512|gb|EGC95371.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia fergusonii ECD227]
          Length = 276

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 23/167 (13%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     ++Y+T +    I+     +L D+  ++      DAL AR+   + +        
Sbjct: 22  RDAEILLEYVTGRGRTFILAFGETQLTDEQLQQL-----DALLARRRAGEPVAHLTGQ-- 74

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
              R++    L V+  TLI R                ++E  L         +L+L  G 
Sbjct: 75  ---REFWSLPLFVSPATLIPRPD-----------TECLVEQALERLPEQPCRILDLGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G  +L LA  R    + AV+    +V  A+ N     + N+ I++  
Sbjct: 121 GAIALALASERPDCEITAVDRMPDAVALAQRNAQHLAIKNIHILQSD 167


>gi|220935549|ref|YP_002514448.1| Methylase of polypeptide chain release factors-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996859|gb|ACL73461.1| Methylase of polypeptide chain release factors-like protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 296

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           LA  +G    +++L  G GN +L +A      RV   ++++ +V  AR N A     +V 
Sbjct: 116 LADVEGESPRVVDLCTGCGNLALAMAVSAPRARVWGSDLSEEAVALARENAAFIGRPDVS 175

Query: 261 IVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +    +  F              D D    R   +  +PP
Sbjct: 176 FMAGDLAAPF--------------DNDDFLGRMDLLTCNPP 202


>gi|70733157|ref|YP_262930.1| hypothetical protein PFL_5872 [Pseudomonas fluorescens Pf-5]
 gi|68347456|gb|AAY95062.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 398

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARLAPYAKGKRVLDLYSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGFAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 272 MTCIEGDV------------FEALKELKASEERFDVIVADPPAFIKRKKDLKNGEGAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNEQAMRLLNKDGILVSASC 339


>gi|4239958|dbj|BAA74757.1| Orf375 [Thermus thermophilus]
          Length = 375

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 21/143 (14%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNFSLVLARHFD 232
              +  +   F+         +L   L    G +G     +L+L  G G  +L LAR   
Sbjct: 197 EYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA 256

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            V+ VE    SV + +  + AN +      +    +  +A+  E              RF
Sbjct: 257 EVVGVEDDLASVLSLQKGLEANALK----AQALHSDVDEALTEEA-------------RF 299

Query: 293 KTIFVDPPRSGLDDATVGMVQAY 315
             I  +PP        + + QA+
Sbjct: 300 DIIVTNPPFHVGGAVILDVAQAF 322


>gi|289627917|ref|ZP_06460871.1| hemK protein [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|320325691|gb|EFW81752.1| hemK protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327390|gb|EFW83404.1| hemK protein [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868899|gb|EGH03608.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELAPAFAPAKVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNSHWFSALEGQQFDLIISNPP 185


>gi|119475428|ref|ZP_01615781.1| SAM-dependent methyltransferase [marine gamma proteobacterium
           HTCC2143]
 gi|119451631|gb|EAW32864.1| SAM-dependent methyltransferase [marine gamma proteobacterium
           HTCC2143]
          Length = 336

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 17/165 (10%)

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE 169
           +T +   +I     HR L+D+  E    L   +       Q I  A++TKI    D V  
Sbjct: 79  ITRREGNSIFYRRAHRNLNDSLNEMQQALITTI-----DRQPISTAHQTKI----DAVQH 129

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLE-----WVLAATKGIQ--GDLLELYCGNGN 222
                     + +  + F+Q    +  + L       +L ++   +  G ++E+  G G 
Sbjct: 130 ERAANSAQF-FDENADLFSQQQEQVAAYELYGPNAIELLTSSFNRKNYGSVIEVGPGEGA 188

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           F   LA  F  V AV+ ++  ++ A      + ++N+  V   +K
Sbjct: 189 FLAELAPRFQHVYAVDNSQQMLDKASSFAKKSGLSNITFVYGDTK 233


>gi|319792465|ref|YP_004154105.1| ubiquinone biosynthesis o-methyltransferase [Variovorax paradoxus
           EPS]
 gi|315594928|gb|ADU35994.1| ubiquinone biosynthesis O-methyltransferase [Variovorax paradoxus
           EPS]
          Length = 242

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 43/105 (40%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   LEW+       Q  ++++ CG G  +  +AR    VL +++A  +++ A+ + 
Sbjct: 33  HEINPLRLEWIDGIAPISQRRVVDIGCGGGILADSMARKGAEVLGIDLAGKALKVAQLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
                  VK   +S++          +     ++  H  +  ++ 
Sbjct: 93  LEAGTRGVKYREISAEALAAEQPGSFDVVTCMEMLEHVPKPASVI 137


>gi|330967415|gb|EGH67675.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAQVLDLGTGTGAIALALANDRQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNSHWFSALEGRQFDLIISNPP 185


>gi|330873306|gb|EGH07455.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAQVLDLGTGTGAIALALANDRQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNSHWFSALEGRQFDLIISNPP 185


>gi|269219854|ref|ZP_06163708.1| protein-(glutamine-N5) methyltransferase [Actinomyces sp. oral
           taxon 848 str. F0332]
 gi|269210759|gb|EEZ77099.1| protein-(glutamine-N5) methyltransferase [Actinomyces sp. oral
           taxon 848 str. F0332]
          Length = 306

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATK----GIQGDLLELYCGNGNFSLVLARHF--DRVLAV 237
             +F            + V  A +    G +  +L+L  G+G  +L +A       V+ V
Sbjct: 86  PGAFI-VRPETEAVAQDAVDEARRIADRGERPRVLDLCTGSGAIALAVATEVPGSAVVGV 144

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS-------- 289
           + +  +++ AR N AA     V+ V   + EF+ A   E +                   
Sbjct: 145 DASAEALQVARENNAAYG-GPVEFVLADALEFSCA--HEPDVREDPGASESGALGSGGAR 201

Query: 290 YRFKTIFVDPP 300
            +F  +  +PP
Sbjct: 202 GKFDVVVANPP 212


>gi|194434244|ref|ZP_03066510.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella dysenteriae 1012]
 gi|194417475|gb|EDX33578.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella dysenteriae 1012]
 gi|332092252|gb|EGI97329.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella boydii 5216-82]
 gi|332098227|gb|EGJ03200.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella dysenteriae 155-74]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 26/223 (11%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     ++Y+T +    ++     +L D+  ++      DAL AR+   + +        
Sbjct: 22  RDAEILLEYVTGRGRTFVLAFGETQLTDEQLQQL-----DALLARRRTGEPVAHLTGQ-- 74

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
              R++    L V+  TLI R                ++E  L         +L+L  G 
Sbjct: 75  ---REFWSLPLFVSPATLIPRPD-----------TECLVEQALERLPEQPCRILDLGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G  +L LA  R    + AV+    +V  A+ N     + N+ I++    ++  A+  ++ 
Sbjct: 121 GAIALALASERPDCEITAVDRMPDAVALAQRNAQHLAIKNIHILQ---SDWFSALAGQQF 177

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
              + +      +   +     R     A V        I++I
Sbjct: 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHI 220


>gi|172037957|ref|YP_001804458.1| hypothetical protein cce_3044 [Cyanothece sp. ATCC 51142]
 gi|171699411|gb|ACB52392.1| hypothetical protein cce_3044 [Cyanothece sp. ATCC 51142]
          Length = 304

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
               +E +L +  G +  LL+L CG G+ +  L     +V   + ++  +  AR N    
Sbjct: 40  QEKPIETLLLSRLGEEATLLDLCCGTGHLTQQLLEKGYQVTGFDGSEGMLAYARQNA--- 96

Query: 255 HVNNVKIVRMSSKEF 269
              N + +   ++ F
Sbjct: 97  --PNGRFLVGDARGF 109


>gi|90416953|ref|ZP_01224882.1| hemK protein [marine gamma proteobacterium HTCC2207]
 gi|90331300|gb|EAS46544.1| hemK protein [marine gamma proteobacterium HTCC2207]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 19/108 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L      Q  +L+L  G G  +L LA  R+  ++ AV++ + +V+ A  N  
Sbjct: 95  TELLVEVALDLALPEQAAVLDLGTGTGAIALALASERNGWQICAVDLQQSAVDLAERNRQ 154

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              +NN   VR+ + ++  A+  +R              F  I  +PP
Sbjct: 155 RYQLNN---VRLFASDWFAAIPVQR--------------FDLIVSNPP 185


>gi|52078600|ref|YP_077391.1| hypothetical protein BL02799 [Bacillus licheniformis ATCC 14580]
 gi|52783962|ref|YP_089791.1| YbxB [Bacillus licheniformis ATCC 14580]
 gi|52001811|gb|AAU21753.1| hypothetical protein with SAM binding motif [Bacillus licheniformis
           ATCC 14580]
 gi|52346464|gb|AAU39098.1| YbxB [Bacillus licheniformis ATCC 14580]
          Length = 201

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 19/102 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +GD L++ CG G   L LA  F    V  +++ + +VE ++ N   N ++N+KI + 
Sbjct: 56  PDAEGDFLDVGCGYGPIGLSLAADFEDRMVHMIDVNERAVELSKENALNNQIDNIKIYQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
                            L      + +F +I  +PP R+G  
Sbjct: 116 D----------------LFANVEPAKKFASIITNPPIRAGKK 141


>gi|326332231|ref|ZP_08198511.1| putative methyltransferase small domain protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325949937|gb|EGD41997.1| putative methyltransferase small domain protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 202

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 21/119 (17%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                  G +L++ CG G   L  A      +V  V++ + +V  A  N A   + +   
Sbjct: 56  ETDPPEGGRILDMGCGYGIIGLACALAAPSAQVTGVDVNERAVLLANENAAKLGLGDRYR 115

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
             + ++                        +  I+ +PP R G       ++   P + 
Sbjct: 116 AAVPAE------------------IDPGTTYDEIWSNPPIRIGKQALHELLLTWLPRLA 156


>gi|296167043|ref|ZP_06849455.1| thiopurine S-methyltransferase family protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897600|gb|EFG77194.1| thiopurine S-methyltransferase family protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 222

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 24/68 (35%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L       GD+L+  CG    SL LA      + ++ +  +++ A    A   + N   
Sbjct: 32  ALIEAGKFHGDVLDAGCGEAAVSLFLAERGFTTVGLDQSPTAIKLATEKAARRGLANATF 91

Query: 262 VRMSSKEF 269
                  F
Sbjct: 92  DVADISAF 99


>gi|156095911|ref|XP_001613990.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802864|gb|EDL44263.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 480

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 91/256 (35%), Gaps = 51/256 (19%)

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
           + L   ++        ++     ++ L +  ++A++ ++  + +     +   RL + L 
Sbjct: 197 DNLPGLIIDRYHDYVAIQHLTLGMELLAATINEALLEVLNPKAIL-FRNDNKERLNERLQ 255

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ-IENSFTQPNAG--INVHMLE 200
             K            KI   +  + E++ +      +   + NS   PN G   N   L 
Sbjct: 256 IYK------------KIAHGK--LPEQVMLTENDCFFFIDMINS---PNTGWFHNRRHLR 298

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVN- 257
            +L+        +L+L+   G+F +  A+     +VL VE      + A+ +   N++  
Sbjct: 299 QLLSDY-AYDKKILDLFSYVGSFGIQCAKKGKAKKVLCVEKDSKFTQLAKKSAYLNNLTS 357

Query: 258 -NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT-------- 308
            +++ V   +  F +  +                 F  I +DPP                
Sbjct: 358 SDIEFVCSDAIAFLENCKEL---------------FDIIILDPPNLIPKSNLILSGTKRY 402

Query: 309 VGMVQAYPHILYISCN 324
           + ++Q   +  Y+S N
Sbjct: 403 IQLIQLAKN--YVSSN 416


>gi|158520779|ref|YP_001528649.1| arsenite S-adenosylmethyltransferase [Desulfococcus oleovorans
           Hxd3]
 gi|158509605|gb|ABW66572.1| Methyltransferase type 11 [Desulfococcus oleovorans Hxd3]
          Length = 266

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 212 DLLELYCGNGNFSLVLARHF----DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G F   LA        +V+ V++    V  AR N       NV+      +
Sbjct: 83  TVLDLGSG-GGFDCFLAGRAVGDSGQVIGVDMTPEMVAKARRNAEQLGAENVEFRLGELE 141

Query: 268 EFTQA 272
               A
Sbjct: 142 NLPVA 146


>gi|152997600|ref|YP_001342435.1| HemK family modification methylase [Marinomonas sp. MWYL1]
 gi|150838524|gb|ABR72500.1| modification methylase, HemK family [Marinomonas sp. MWYL1]
          Length = 282

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 19/109 (17%)

Query: 195 NVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNI 251
              ++E  L+         +L+L  G G  +L LA    +  V+ V++ + +V  A+ N 
Sbjct: 96  TERLVEVALSVLDISKVNRILDLGTGTGAIALSLASEQPKSTVMGVDLVEDAVALAKRNA 155

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             N ++NV  ++ S             F+ L+  +     F  I  +PP
Sbjct: 156 LRNKLSNVDFLQSS------------WFDALEGCE----PFDLIVSNPP 188


>gi|262392911|ref|YP_003284765.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. Ex25]
 gi|262336505|gb|ACY50300.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. Ex25]
          Length = 199

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G       +R  ++V  VE+   + +  + N+A
Sbjct: 46  VKETLFNWLAQDVP--QAKCLDLFAGSGGLGFESASRQAEQVTMVELNPQAFQQLQKNVA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           + + NN+++V   +  F +                       +F+DPP R GL D TV +
Sbjct: 104 SLNANNIQVVNTDALSFLKQ---------------PGTAHHVVFIDPPFRKGLLDETVAL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LEQNGWLAEDAMIYI 163


>gi|30249864|ref|NP_841934.1| hemK_fam: modification methylase [Nitrosomonas europaea ATCC 19718]
 gi|30180901|emb|CAD85823.1| hemK_fam: modification methylase [Nitrosomonas europaea ATCC 19718]
          Length = 289

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 22/137 (16%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDR-- 233
            L++    +    P       ++E  L+      + ++L+L  G+G  ++ LARH     
Sbjct: 91  DLVFEVTPDVLI-PRPE-TELLVEMALSKIPSDRKCNVLDLGTGSGAIAITLARHRASTC 148

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V AV+ +  ++  AR N   + V NV  +                          S +F 
Sbjct: 149 VTAVDFSPGAMAVARRNARMHAVKNVVFIEAD-----------------WFSSFTSEKFD 191

Query: 294 TIFVDPPRSGLDDATVG 310
            I  +PP     D  + 
Sbjct: 192 VIVANPPYVAAGDPHLE 208


>gi|218889095|ref|YP_002437959.1| putative SAM-dependent methyltransferase [Pseudomonas aeruginosa
           LESB58]
 gi|254237410|ref|ZP_04930733.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126169341|gb|EAZ54852.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218769318|emb|CAW25078.1| putative SAM-dependent methyltransferase [Pseudomonas aeruginosa
           LESB58]
          Length = 398

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A       +L+L+   G + +   A     V+ V+ +  +++    N A N V   
Sbjct: 212 RARLAPYVRGKRVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGV--A 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------------L 304
           + V     +  +A+R  +  +          RF  +  DPP                  L
Sbjct: 270 EKVACVEGDVFEALRELKAADE---------RFDVVIADPPAFIKRKKDLKNGEAAYRRL 320

Query: 305 DDATVGMVQAYPHILYISC 323
           ++  + ++     ++  SC
Sbjct: 321 NEQAMRLLSKDGILVSASC 339


>gi|330881881|gb|EGH16030.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELAPAFAPAKVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNSHWFSALEGQQFDLIISNPP 185


>gi|291388505|ref|XP_002710656.1| PREDICTED: hypothetical protein, partial [Oryctolagus cuniculus]
          Length = 391

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 64/194 (32%), Gaps = 15/194 (7%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +     + A  +   A +  +  L     +   L   S++      +  L  + W   A
Sbjct: 99  CLQVRRWVEARGVAWSAELEAD--LPRSWQRHGDLLLLSEECFQAKQWGNLEPELWDTVA 156

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G        L  D+        G    +       SF      
Sbjct: 157 SALGVQRLAKRGRVLPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTRCMFSF------ 210

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 211 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVAALRKN 268

Query: 251 IAANHVNNVKIVRM 264
           +  N V +   +  
Sbjct: 269 LEINGVADRCQIHF 282


>gi|319644932|ref|ZP_07999165.1| YqeM protein [Bacillus sp. BT1B_CT2]
 gi|317392741|gb|EFV73535.1| YqeM protein [Bacillus sp. BT1B_CT2]
          Length = 258

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E  + A +  +  +L+L CG G  S+ LA     V  ++I++  +  A+Y  A   ++ 
Sbjct: 26  IEQTIGAQQKERIRVLDLACGTGEISVRLAEKGYDVTGIDISEDMLAQAQYKAAVRQLD- 84

Query: 259 VKIVRMSSKEFT 270
           ++  +   +E  
Sbjct: 85  IQFFQQDMRELA 96


>gi|303243579|ref|ZP_07329921.1| protein of unknown function Met10 [Methanothermococcus okinawensis
           IH1]
 gi|302486140|gb|EFL49062.1| protein of unknown function Met10 [Methanothermococcus okinawensis
           IH1]
          Length = 252

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A        +++++ G G F++ +A+     ++ A+EI   S      NI  N + NV 
Sbjct: 89  MAYISNSDETVVDMFAGIGYFTIPMAKYSKPKKIYAIEINPDSYHYMVENIKLNKLTNVV 148

Query: 261 IVRMSSKEFTQAMRRER 277
            +   +++       +R
Sbjct: 149 PILSDNRDVALKNIADR 165


>gi|300784405|ref|YP_003764696.1| transferase [Amycolatopsis mediterranei U32]
 gi|299793919|gb|ADJ44294.1| putative transferase [Amycolatopsis mediterranei U32]
          Length = 231

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            LA      G++L++ CG G+ S  LA    RV  ++ A  ++E AR   A   ++ ++ 
Sbjct: 35  ALADAGEFTGEVLDIGCGLGDNSAFLASRGLRVTGLDGAPSALEQARSRAAEKGLD-IEF 93

Query: 262 VRMSSKEF 269
               + + 
Sbjct: 94  AVADATKL 101


>gi|320095377|ref|ZP_08027057.1| transferase [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977682|gb|EFW09345.1| transferase [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 434

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           G  L+L CG G  +L LA H  RV+A +++  +    ++N A N  
Sbjct: 74  GSALDLGCGCGTQALYLATHCGRVVATDLSARAGALTQFNAALNGA 119


>gi|281417301|ref|ZP_06248321.1| Methyltransferase type 11 [Clostridium thermocellum JW20]
 gi|281408703|gb|EFB38961.1| Methyltransferase type 11 [Clostridium thermocellum JW20]
          Length = 215

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 33/60 (55%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +++L CG G  ++ LA++  +V AV+I++  +E  R      ++ N++  ++  +  +
Sbjct: 35  KKVMDLGCGTGRHTIYLAQNGYQVFAVDISETGIEVTRAKAEKLNLTNIEFAQLDMRNLS 94


>gi|324113972|gb|EGC07946.1| protein-(glutamine-N5) methyltransferase [Escherichia fergusonii
           B253]
          Length = 276

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 23/167 (13%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     ++Y+T +    I+     +L D+  ++      DAL AR+   + I        
Sbjct: 22  RDAEILLEYVTGRGRTFILAFGETQLTDEQLQQL-----DALLARRRAGEPIAHLTGQ-- 74

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
              R++    L V+  TLI R                ++E  L         +L+L  G 
Sbjct: 75  ---REFWSLPLFVSPATLIPRPD-----------TECLVEQALERLPEQPCRILDLGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G  +L LA  R    + AV+    +V  A+ N     + N+ I++  
Sbjct: 121 GAIALALASERPDCEITAVDRMPDAVALAQRNAQHLAIKNIHILQSD 167


>gi|312793257|ref|YP_004026180.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180397|gb|ADQ40567.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 288

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 21/133 (15%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIA 252
              ++E  +   KG +    L++  G+G  ++ L +  D +VLAV+I++ ++E AR N  
Sbjct: 105 TEVLVEVAIEIFKGRKNLYFLDIGTGSGCIAVALCKFLDCKVLAVDISERALEVARKNAK 164

Query: 253 ANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATV 309
            N V N +  +R +  E                    + +F  I  +PP    D+     
Sbjct: 165 LNGVENKISFIRSNLFENIP----------------QNLKFDAILSNPPYISKDEIFELD 208

Query: 310 GMVQAYPHILYIS 322
             V   PHI   S
Sbjct: 209 QRVLKEPHIALFS 221


>gi|315505164|ref|YP_004084051.1| methyltransferase type 11 [Micromonospora sp. L5]
 gi|315411783|gb|ADU09900.1| Methyltransferase type 11 [Micromonospora sp. L5]
          Length = 294

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 12/117 (10%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIA 252
             ++E V          +L++ CG+G      A       RV+ ++IA   VE AR   A
Sbjct: 40  RRLVERVA---PAPGHRVLDVGCGSGACLFPAAARVGPAGRVVGIDIAPGMVETARAEAA 96

Query: 253 ANHVNNVKIVRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              V NV+   M  +           +        L D+     R+  + V   R G
Sbjct: 97  RRGVGNVEARVMDGERVDFPAASFDVVIGSYSLIFLPDVRSALRRYAQVLVPGGRIG 153


>gi|257052325|ref|YP_003130158.1| putative RNA methylase [Halorhabdus utahensis DSM 12940]
 gi|256691088|gb|ACV11425.1| putative RNA methylase [Halorhabdus utahensis DSM 12940]
          Length = 343

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 5/145 (3%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F QP +           AA       +L+  CG G   L  +R    V+ V+  +  V  
Sbjct: 175 FFQPGSMDPALARALGNAAGARPGARVLDPMCGTGGLLLEASRVGATVVGVDALEKMVRG 234

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            R N+ A   +   + R  ++     +    +      +D    R   I  D     L+D
Sbjct: 235 TRENLVAAGADEFLVCRGDARR----LPFGTDAFDAVVVDAPYGRQTKISADSLAVLLED 290

Query: 307 ATVGMVQAYPHILYISCNP-DSLCR 330
           A     +  P  + +   P  ++ R
Sbjct: 291 ALAQARRVAPRAVVVGDRPWAAVAR 315


>gi|167903945|ref|ZP_02491150.1| glycosyl transferase, group 1 [Burkholderia pseudomallei NCTC
           13177]
          Length = 1741

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            HM  +++A        +L++ CG G  S  LAR    V+ V+I++ ++  AR       
Sbjct: 48  EHMHRYLVARKLAKGLRVLDIACGEGYGSFALAREAATVVGVDISEDAIRHAREEYGQR- 106

Query: 256 VNNVKIVRMSSKEF 269
             N++ V  S+   
Sbjct: 107 AANLEFVVGSAANI 120


>gi|329924055|ref|ZP_08279318.1| 23S rRNA m5C1962 methyltransferase [Paenibacillus sp. HGF5]
 gi|328940894|gb|EGG37202.1| 23S rRNA m5C1962 methyltransferase [Paenibacillus sp. HGF5]
          Length = 457

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 14/114 (12%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +LE +   G+F+L   +    +V  ++I++ ++E+A+ N+  N   + V+ V   + +
Sbjct: 255 ATVLECFSHTGSFTLHACKYGAKKVTCLDISEHAIESAKENVELNGFQDRVEFVVDDAFQ 314

Query: 269 FTQAMRREREFNRLKDIDIH------------SYRFKTIFVDPPRSGLDDATVG 310
           + ++  +  E   L+                    +  + +DPP      + V 
Sbjct: 315 YLRSQVKGLEERELRAQGDQKVDTSKPLTAGGGRSWDVVILDPPAFAKTRSAVK 368


>gi|157098465|gb|AAH03057.2| TRMT12 protein [Homo sapiens]
          Length = 366

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 99  CLEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVA 156

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
           + L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 157 LALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSF------ 210

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 211 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 268

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +  N   +  +I    +++   +   +R    L       +      +     G+
Sbjct: 269 LEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGI 323


>gi|115946840|ref|XP_001180639.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 326

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 212 DLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV-RMSSKE 268
            +++LY G G F+L   +      + A E    +V+A R N+  N VN+  I+    +++
Sbjct: 22  TVVDLYAGIGYFTLPYLVHAKAKLLYACEWNPHAVKALRTNLKLNGVNDRCIILEGDNRK 81

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                  +R    L  +    +      ++P   G+
Sbjct: 82  VCPVGVADRVNLGLIPLSEQGWPVACAALNPITGGV 117


>gi|115911664|ref|XP_798254.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 334

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 212 DLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV-RMSSKE 268
            +++LY G G F+L   +      + A E    +V+A R N+  N VN+  I+    +++
Sbjct: 30  TVVDLYAGIGYFTLPYLVHAKAKLLYACEWNPHAVKALRTNLKLNGVNDRCIILEGDNRK 89

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                  +R    L  +    +      ++P   G+
Sbjct: 90  VCPVGVADRVNLGLIPLSEQGWPVACAALNPITGGV 125


>gi|160871768|ref|ZP_02061900.1| 3-demethylubiquinone-9 3-O-methyltransferase [Rickettsiella grylli]
 gi|159120567|gb|EDP45905.1| 3-demethylubiquinone-9 3-O-methyltransferase [Rickettsiella grylli]
          Length = 234

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 57/154 (37%), Gaps = 20/154 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           IN   LE++          ++++ CG G F+  +A+    V  ++ +   ++ A+ + A 
Sbjct: 34  INPLRLEFLETWQTLKGKKVIDVGCGGGIFAEAMAQRGAEVTGIDKSGALIDVAKKHAAD 93

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N +  +      ++ F    R   +     ++  H     ++           A   + +
Sbjct: 94  NQLP-IDYFSAEAESFATHQRESYDVVCCMELLEHVPCPLSLI---------QACSQLAK 143

Query: 314 AYPHILYISCNPDSLCRD-----LSILSTTHTIE 342
               I +      ++ R+     L+IL   H ++
Sbjct: 144 PNARIFF-----STINRNPRAYFLAILGAEHLLK 172


>gi|15079819|gb|AAH11713.1| TRNA methyltransferase 12 homolog (S. cerevisiae) [Homo sapiens]
          Length = 448

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 16/235 (6%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 108 CLEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVA 165

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
           + L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 166 LALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSF------ 219

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 220 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 277

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +  N   +  +I    +++   +   +R    L       +      +     G+
Sbjct: 278 LEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGI 332


>gi|71735390|ref|YP_273269.1| hemK protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555943|gb|AAZ35154.1| hemK protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 277

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAKVLDLGTGTGAIALALANERQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNSHWFNALEGQQFDLIISNPP 185


>gi|312100431|gb|ADQ27825.1| glycosyltransferase [Burkholderia pseudomallei]
          Length = 1706

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            HM  +++A        +L++ CG G  S  L++    V+ V+I++ +V  A        
Sbjct: 50  EHMHRYLVARKLAAGMRVLDIACGEGYGSFALSQTAASVVGVDISEEAVRHAVA-AYGQR 108

Query: 256 VNNVKIVRMSSKEF 269
            +N++ V  S+ + 
Sbjct: 109 ADNLEFVVGSAADI 122


>gi|283131229|dbj|BAI63280.1| putative SAM-dependent methyltransferase [Streptomyces sp.
           SNA15896]
          Length = 228

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +     ++GD+ +  CG G  SL LA     V  V+ +  ++  AR       ++    
Sbjct: 34  AIEEAGLVKGDVFDPGCGTGETSLYLASKGHTVTGVDFSATAIATARRKAEERGLDVTFE 93

Query: 262 VRMSSKE 268
           V    ++
Sbjct: 94  VADILED 100


>gi|255348769|ref|ZP_05380776.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis 70]
 gi|255503309|ref|ZP_05381699.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis 70s]
 gi|255506988|ref|ZP_05382627.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis D(s)2923]
 gi|289525446|emb|CBJ14923.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis Sweden2]
 gi|296434998|gb|ADH17176.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis E/150]
 gi|296438718|gb|ADH20871.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis E/11023]
          Length = 275

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L L+   G  S+  A+    V  V+ +K +V+ A+ N+  N   + +I          
Sbjct: 108 RVLNLFAYTGASSIFCAQQGATVYHVDASKAAVKWAQKNVEGNAFQDKRIF--------- 158

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
               E  F+ LK        +  I +DPP  G   
Sbjct: 159 -WIIEDVFSFLKKEIRRGKTYDVILLDPPTYGRGP 192


>gi|187734982|ref|YP_001877094.1| methyltransferase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425034|gb|ACD04313.1| methyltransferase [Akkermansia muciniphila ATCC BAA-835]
          Length = 191

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 210 QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + D+L+L+ G+G F L  L+R       V+ ++ S  AAR N+    +    +++  + +
Sbjct: 41  RADVLDLFAGSGAFGLEALSRGARDARMVDFSRLSCAAARANLVKTGLEGGTVIQGDAVQ 100

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           F    RRE    R         ++  IF DPP
Sbjct: 101 FV---RRELLAGR---------KYDIIFADPP 120


>gi|148270127|ref|YP_001244587.1| SAM-dependent methyltransferase-like protein [Thermotoga petrophila
           RKU-1]
 gi|281412531|ref|YP_003346610.1| methyltransferase small [Thermotoga naphthophila RKU-10]
 gi|147735671|gb|ABQ47011.1| SAM-dependent methyltransferase [Thermotoga petrophila RKU-1]
 gi|281373634|gb|ADA67196.1| methyltransferase small [Thermotoga naphthophila RKU-10]
          Length = 391

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 16/120 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
           N  M+          +   L+ +   GNF++ L +     V  V+ ++ ++E AR  +  
Sbjct: 204 NAKMV-----MDLAEEKVCLDAFSYTGNFAVHLLKGGAKHVTLVDYSERALEVARETLKL 258

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N  ++ +            +     F+ LK  D    ++  + +DPP      + +   +
Sbjct: 259 NGFDSSRY----------DLLPGNAFDILKSFDREGQKYDLVVLDPPSFAKSSSNLESAK 308


>gi|107099338|ref|ZP_01363256.1| hypothetical protein PaerPA_01000350 [Pseudomonas aeruginosa PACS2]
          Length = 398

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A       +L+L+   G + +   A     V+ V+ +  +++    N A N V   
Sbjct: 212 RARLAPYVRGKRVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGV--A 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------------L 304
           + V     +  +A+R  +  +          RF  +  DPP                  L
Sbjct: 270 EKVACVEGDVFEALRELKAADE---------RFDVVIADPPAFIKRKKDLKNGEAAYRRL 320

Query: 305 DDATVGMVQAYPHILYISC 323
           ++  + ++     ++  SC
Sbjct: 321 NEQAMRLLSKDGILVSASC 339


>gi|15605129|ref|NP_219914.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis D/UW-3/CX]
 gi|76789135|ref|YP_328221.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis A/HAR-13]
 gi|237802829|ref|YP_002888023.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804751|ref|YP_002888905.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311210|ref|ZP_05353780.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis 6276]
 gi|255317512|ref|ZP_05358758.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis 6276s]
 gi|3328831|gb|AAC68001.1| SAM dependent methyltransferase [Chlamydia trachomatis D/UW-3/CX]
 gi|76167665|gb|AAX50673.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis A/HAR-13]
 gi|231273051|emb|CAX09964.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274063|emb|CAX10857.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296435925|gb|ADH18099.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis G/9768]
 gi|296436852|gb|ADH19022.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis G/11222]
 gi|296437786|gb|ADH19947.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis G/11074]
 gi|297140286|gb|ADH97044.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis G/9301]
 gi|297748534|gb|ADI51080.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis D-EC]
 gi|297749414|gb|ADI52092.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis D-LC]
          Length = 275

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L L+   G  S+  A+    V  V+ +K +V+ A+ N+  N   + +I          
Sbjct: 108 RVLNLFAYTGASSIFCAQQGATVYHVDASKAAVKWAQKNVEGNAFQDKRIF--------- 158

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
               E  F+ LK        +  I +DPP  G   
Sbjct: 159 -WIIEDVFSFLKKEIRRGKTYDVILLDPPTYGRGP 192


>gi|312100417|gb|ADQ27813.1| glycosyltransferase [Burkholderia pseudomallei]
 gi|312100462|gb|ADQ27848.1| putative glycosyltransferase [Burkholderia pseudomallei]
          Length = 1738

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            HM  +++A        +L++ CG G  S  L++    V+ V+I++ +V  A        
Sbjct: 50  EHMHRYLVARKLAAGMRVLDIACGEGYGSFALSQTAASVVGVDISEEAVRHAVA-AYGQR 108

Query: 256 VNNVKIVRMSSKEF 269
            +N++ V  S+ + 
Sbjct: 109 ADNLEFVVGSAADI 122


>gi|159028034|emb|CAO87994.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 264

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           DY  + +        Y   +N FTQ         L+ V          +L++  G G  +
Sbjct: 4   DYQRQVIDFYALRHDY---DNDFTQ------ARALKLVNYLYLQKSQSVLDVATGTGFIA 54

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           + +A     V+ V+     +  A   + A ++ N+ ++   
Sbjct: 55  VAIAPKVKSVIGVDFTPEMIARAEKKLEALNIENIDLINAD 95


>gi|307293629|ref|ZP_07573473.1| Conserved hypothetical protein CHP00095 [Sphingobium
           chlorophenolicum L-1]
 gi|306879780|gb|EFN10997.1| Conserved hypothetical protein CHP00095 [Sphingobium
           chlorophenolicum L-1]
          Length = 289

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 22/189 (11%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R +    +      +D   A    I         +   +R    E   +    + ++   
Sbjct: 32  RFIRPEPQAMWAPAQDDWTADGEFIPGSDEEGGGRWFYERPVPAEGWPLHWNDVTFQASC 91

Query: 185 N-----SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
                  F    A +   M   +       Q  ++ L+   G  +L +A    +++ V+ 
Sbjct: 92  TPFRHLGFFPDMAPVWDWMRGKIADKD---QAQVMNLFGYTGVGTLAMAAAGAQMVHVDA 148

Query: 240 AKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +K SV  AR N A + + +  V+ +   + +F     R               R+  I +
Sbjct: 149 SKKSVAQARANAALSGLEDRPVRWIVDDAAKFVAREVR------------RGRRYDGILL 196

Query: 298 DPPRSGLDD 306
           DPP+ G   
Sbjct: 197 DPPKYGRGP 205


>gi|284921024|emb|CBG34089.1| protein methyltransferase hemk (protein-glutamine N
           methyltransferase) [Escherichia coli 042]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 81/223 (36%), Gaps = 26/223 (11%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     ++++T +    I+     +L D+  ++      DAL  R+   + I       +
Sbjct: 22  RDAEILLEHVTGKGRTFILAFGETQLTDEQCQQL-----DALLTRRRDGEPIAH-----L 71

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
              R++    L V+  TLI R                ++E  LA        +L+L  G 
Sbjct: 72  TGGREFWSLPLFVSPATLIPRPD-----------TECLVEQALARLPEQPCRILDLGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G  +L LA  R    + AV+    +V  A+ N     + N+ I++    ++  A+  ++ 
Sbjct: 121 GAIALALASERPDCEITAVDRMPDAVSLAQRNAQNLAIKNIHILQ---SDWFSALAGQQF 177

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
              + +      +   +     R     A V        I++I
Sbjct: 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHI 220


>gi|224029597|gb|ACN33874.1| unknown [Zea mays]
          Length = 589

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            G +++ + G G  ++  A+    V+AV+I    ++ A +N +   V +++  +      
Sbjct: 429 AGVMIDCFTGVGGNAIQFAKKCKHVIAVDIDPQKIDCAHHNASIYGVNDHIDFIVGDFIH 488

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKT 294
               ++ E  F           +   
Sbjct: 489 IAPHLKGETAFMSPPWGGPDYAKVDV 514


>gi|319649125|ref|ZP_08003333.1| YbxB protein [Bacillus sp. BT1B_CT2]
 gi|317388825|gb|EFV69644.1| YbxB protein [Bacillus sp. BT1B_CT2]
          Length = 184

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 19/102 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +GD L++ CG G   L LA  F    V  +++ + +VE ++ N   N ++N+KI + 
Sbjct: 39  PDAEGDFLDVGCGYGPIGLSLAADFEDRMVHMIDVNERAVELSKENALNNQIDNIKIYQS 98

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
                            L      + +F +I  +PP R+G  
Sbjct: 99  D----------------LFANVEPAKKFASIITNPPIRAGKK 124


>gi|296108842|ref|YP_003615791.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus infernus ME]
 gi|295433656|gb|ADG12827.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus infernus ME]
          Length = 178

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 35/67 (52%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++  G G  S+ +A    +V ++++ + ++E  + N+   ++ N +I+   ++E  + 
Sbjct: 34  VADIGSGAGGMSVEIALRAKKVYSIDLNREAIENLKENLKKFNIKNCEIIHGKAEEAIKN 93

Query: 273 MRREREF 279
           +   + F
Sbjct: 94  LEFNKAF 100


>gi|166366430|ref|YP_001658703.1| methyltransferase [Microcystis aeruginosa NIES-843]
 gi|166088803|dbj|BAG03511.1| probable methyltransferase [Microcystis aeruginosa NIES-843]
          Length = 264

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           DY  + +        Y   +N FTQ         L+ V          +L++  G G  +
Sbjct: 4   DYQRQVIDFYALRHDY---DNDFTQ------ARALKLVNYLYLQKSQSVLDVATGTGFIA 54

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           + +A     V+ V+     +  A   + A ++ N+ ++   
Sbjct: 55  VAIAPKVKSVIGVDFTPEMIARAEKKLEALNIENIDLINAD 95


>gi|15595551|ref|NP_249045.1| hypothetical protein PA0354 [Pseudomonas aeruginosa PAO1]
 gi|116054082|ref|YP_788525.1| hypothetical protein PA14_04640 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296386850|ref|ZP_06876349.1| SAM-dependent methyltransferase [Pseudomonas aeruginosa PAb1]
 gi|313112031|ref|ZP_07797816.1| putative SAM-dependent methyltransferase [Pseudomonas aeruginosa
           39016]
 gi|9946204|gb|AAG03743.1|AE004473_5 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115589303|gb|ABJ15318.1| putative SAM-dependent methyltransferase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310884318|gb|EFQ42912.1| putative SAM-dependent methyltransferase [Pseudomonas aeruginosa
           39016]
          Length = 398

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A       +L+L+   G + +   A     V+ V+ +  +++    N A N V   
Sbjct: 212 RARLAPYVQGKRVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGV--A 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------------L 304
           + V     +  +A+R  +  +          RF  +  DPP                  L
Sbjct: 270 EKVACVEGDVFEALRELKAADE---------RFDVVIADPPAFIKRKKDLKNGEAAYRRL 320

Query: 305 DDATVGMVQAYPHILYISC 323
           ++  + ++     ++  SC
Sbjct: 321 NEQAMRLLSKDGILVSASC 339


>gi|294628562|ref|ZP_06707122.1| ubiquinone/menaquinone biosynthesis methyltransferase [Streptomyces
           sp. e14]
 gi|292831895|gb|EFF90244.1| ubiquinone/menaquinone biosynthesis methyltransferase [Streptomyces
           sp. e14]
          Length = 208

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +     E +         D+L+L CG G+ SL+ A    RV  V++++  +E AR   
Sbjct: 37  PLVRAAWAERLRGWLPARPADVLDLGCGTGSLSLLAAEQGHRVTGVDLSEAMIERAR--A 94

Query: 252 AANHVNNVKIVRMSSK 267
                 +   +   + 
Sbjct: 95  KLAG-RDAVFLPGDAA 109


>gi|289765719|ref|ZP_06525097.1| methyltransferase [Fusobacterium sp. D11]
 gi|289717274|gb|EFD81286.1| methyltransferase [Fusobacterium sp. D11]
          Length = 370

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 64/160 (40%), Gaps = 32/160 (20%)

Query: 163 DRDYVDERLTV---AGRTLIYRQIENSF----TQPNAGI------NVHMLEWVLAATKGI 209
           D+D + E L +     + L Y   E  F     + N G+         ++E  +   + +
Sbjct: 122 DKDKIREMLVLRAKKRKPLQYILGEWEFYGLPFKVNEGVLIPRADTEILVEQCIQLMREV 181

Query: 210 Q-GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +  ++L++  G+G  S+ +A       +  ++I + +++ A  N   N + NV  +    
Sbjct: 182 EEPNILDIGSGSGAISIAIANELKSSSITGIDINEKAIKLANENKILNKIENVNFI---- 237

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                      E N  + +D   +++  I  +PP    ++
Sbjct: 238 -----------ESNLFEKLD-KDFKYDLIVSNPPYISKEE 265


>gi|302550399|ref|ZP_07302741.1| phosphatidylethanolamine N-methyltransferase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468017|gb|EFL31110.1| phosphatidylethanolamine N-methyltransferase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 223

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            G+       +     G  GD+L+L CG G+ SL+ +    RV  V+++   V  AR  +
Sbjct: 37  PGVRRAWAGRLRGWLPGRAGDVLDLGCGTGSLSLLASEQGHRVTGVDLSPAMVALARRKL 96

Query: 252 AANHVNNVKIVRMSSKE 268
           A     +   +   + +
Sbjct: 97  AGR---DALFLVGDAAQ 110


>gi|169629918|ref|YP_001703567.1| hypothetical protein MAB_2834c [Mycobacterium abscessus ATCC 19977]
 gi|169241885|emb|CAM62913.1| Conserved hypothetical protein (methyltransferase?) [Mycobacterium
           abscessus]
          Length = 227

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QP   I + ++E        + GD+L+  CG    +L LA      + ++ A  +++ A+
Sbjct: 31  QPQPEI-LKLIEQ-----GKVHGDVLDAGCGEAATALYLAERGHTAVGLDAAPTAIQLAK 84

Query: 249 YNIAANHVNNVKIVRMSSKEFT 270
              A   + NV         FT
Sbjct: 85  GYAAERGLTNVTFDVADISNFT 106


>gi|261405598|ref|YP_003241839.1| PUA domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261282061|gb|ACX64032.1| PUA domain containing protein [Paenibacillus sp. Y412MC10]
          Length = 457

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 14/114 (12%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +LE +   G+F+L   +    +V  ++I++ ++E+A+ N+  N   + V+ V   + +
Sbjct: 255 ATVLECFSHTGSFTLHACKYGAKKVTCLDISEHAIESAKENVELNGFQDRVEFVVDDAFQ 314

Query: 269 FTQAMRREREFNRLKDIDIH------------SYRFKTIFVDPPRSGLDDATVG 310
           + ++  +  E   L+                    +  + +DPP      + V 
Sbjct: 315 YLRSQVKGLEERELRAQGDQKVDTSKPLTAGGGRSWDVVILDPPAFAKTRSAVK 368


>gi|115373887|ref|ZP_01461179.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|310820973|ref|YP_003953331.1| hypothetical protein STAUR_3716 [Stigmatella aurantiaca DW4/3-1]
 gi|115369153|gb|EAU68096.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309394045|gb|ADO71504.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 398

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 64/216 (29%), Gaps = 36/216 (16%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGR--ANKTKICLDRDYVDERLTVAGRTLIYRQI 183
           LL +A +     L+  +   +     +       T   L      E + +  R   +   
Sbjct: 138 LLVEALKAALPELKGIIGRDEVARDDVEEEEGRGTGRMLYGPQAPELIPIRERGATFLVD 197

Query: 184 E-----NSFT--QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVL 235
                   F   Q     N  ++  +         ++L  +C +G FS+  A      V 
Sbjct: 198 AWKGQKTGFFLDQ---RENRFLIRRLA-----KDREVLNCFCFSGGFSVNAALGGAKSVF 249

Query: 236 AVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           +V++   ++  AR N   N +       +     +  Q+ + E               F 
Sbjct: 250 SVDLDPDAIALARENFTRNGLPAERHDFLAADVFKIIQSFKDE------------GRTFD 297

Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
            I +DPP        V          Y S N  +L 
Sbjct: 298 LIILDPPAFAKSQKAVQAAIDG----YASLNRQALA 329


>gi|152988111|ref|YP_001345842.1| hypothetical protein PSPA7_0447 [Pseudomonas aeruginosa PA7]
 gi|150963269|gb|ABR85294.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 398

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A       +L+L+   G + +   A     V+ V+ +  +++    N A N V   
Sbjct: 212 RARLAPYVQGKRVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGV--A 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------------L 304
           + V     +  +A+R  +  +          RF  +  DPP                  L
Sbjct: 270 EKVACVEGDVFEALRELKAADE---------RFDVVIADPPAFIKRKKDLKNGEAAYRRL 320

Query: 305 DDATVGMVQAYPHILYISC 323
           ++  + ++     ++  SC
Sbjct: 321 NEQAMRLLSKDGILVSASC 339


>gi|254243452|ref|ZP_04936774.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126196830|gb|EAZ60893.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 398

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 27/139 (19%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A       +L+L+   G + +   A     V+ V+ +  +++    N A N V   
Sbjct: 212 RARLAPYVQGKRVLDLFSYIGGWGIQAAAFGASEVMCVDASAFALDGVERNAALNGV--A 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------------L 304
           + V     +  +A+R  +  +          RF  +  DPP                  L
Sbjct: 270 EKVACVEGDVFEALRELKAADE---------RFDVVIADPPAFIKRKKDLKNGEAAYRRL 320

Query: 305 DDATVGMVQAYPHILYISC 323
           ++  + ++     ++  SC
Sbjct: 321 NEQAMRLLSKDGILVSASC 339


>gi|295702341|ref|YP_003595416.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus megaterium DSM 319]
 gi|294800000|gb|ADF37066.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus megaterium DSM 319]
          Length = 200

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                 G LL++ CG G   L LA+   +  V  V++ + ++  A+ N   N V+NV I 
Sbjct: 54  QMPESPGPLLDVGCGYGPIGLALAKEDSQRNVHMVDVNERALALAQKNAEVNSVSNVSIY 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           + S  E                 ++    F  I  +PP          +++ 
Sbjct: 114 QSSCYE-----------------NVKETNFAAILSNPPIRAGKKVVHEILEK 148


>gi|294496974|ref|YP_003560674.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus megaterium QM
           B1551]
 gi|294346911|gb|ADE67240.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus megaterium QM
           B1551]
          Length = 200

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                 G LL++ CG G   L LA+   +  V  V++ + ++  A+ N   N V+NV I 
Sbjct: 54  QMPESPGPLLDVGCGYGPIGLALAKEDSQRNVHMVDVNERALALAQKNAEVNSVSNVSIY 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           + S  E                 ++    F  I  +PP          +++ 
Sbjct: 114 QSSCYE-----------------NVKETNFAAILSNPPIRAGKKVVHEILEK 148


>gi|224025263|ref|ZP_03643629.1| hypothetical protein BACCOPRO_02000 [Bacteroides coprophilus DSM
           18228]
 gi|224018499|gb|EEF76497.1| hypothetical protein BACCOPRO_02000 [Bacteroides coprophilus DSM
           18228]
          Length = 279

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              ++ W++     +   +L++  G+G   + LA       V A +++  ++E AR N  
Sbjct: 96  TEELVSWIVEDHPDVPVRILDIGTGSGCIPVSLAHRLPLSTVHAWDVSPEALEVARRNAI 155

Query: 253 ANHVNNVKIVRMSS 266
            N V  V   ++ +
Sbjct: 156 RNGVT-VHFQQVDA 168


>gi|189499722|ref|YP_001959192.1| Methyltransferase type 11 [Chlorobium phaeobacteroides BS1]
 gi|189495163|gb|ACE03711.1| Methyltransferase type 11 [Chlorobium phaeobacteroides BS1]
          Length = 267

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A  G    +L+L  G G    + A        V+ V++    +E AR N   N V NV+ 
Sbjct: 68  ANLGNNETVLDLGSGAGFDCFLAAAKVGPQGNVIGVDMTPAMIEKARANAKNNGVENVEF 127

Query: 262 VRMSSKEFTQA 272
                +    A
Sbjct: 128 RLGEIENLPVA 138


>gi|110667583|ref|YP_657394.1| methyltransferase [Haloquadratum walsbyi DSM 16790]
 gi|109625330|emb|CAJ51752.1| predicted methyltransferase [Haloquadratum walsbyi DSM 16790]
          Length = 329

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
                +++++ G G F++ +A     V+A E+ + +VE    N   N V +N  IV    
Sbjct: 175 DAHDHVIDMFAGVGPFAVPMAARGADVVAAELNENAVEYLSINAEQNDVDDNFTIVSGDV 234

Query: 267 K 267
           +
Sbjct: 235 R 235


>gi|15801441|ref|NP_287458.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 EDL933]
 gi|15830971|ref|NP_309744.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168750772|ref|ZP_02775794.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4113]
 gi|168758137|ref|ZP_02783144.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764381|ref|ZP_02789388.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771101|ref|ZP_02796108.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776895|ref|ZP_02801902.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4196]
 gi|168782568|ref|ZP_02807575.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4076]
 gi|168787716|ref|ZP_02812723.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC869]
 gi|168801525|ref|ZP_02826532.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC508]
 gi|195939100|ref|ZP_03084482.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208806533|ref|ZP_03248870.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4206]
 gi|208815524|ref|ZP_03256703.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4045]
 gi|208822687|ref|ZP_03263006.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4042]
 gi|209396125|ref|YP_002270146.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4115]
 gi|217328046|ref|ZP_03444128.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. TW14588]
 gi|254792682|ref|YP_003077519.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261224944|ref|ZP_05939225.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257199|ref|ZP_05949732.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291282237|ref|YP_003499055.1| Protein-(Glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O55:H7 str. CB9615]
 gi|12514925|gb|AAG56070.1|AE005338_10 possible protoporphyrinogen oxidase [Escherichia coli O157:H7 str.
           EDL933]
 gi|13361182|dbj|BAB35140.1| possible protoporphyrinogen oxidase [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767812|gb|EDU31656.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4196]
 gi|188015064|gb|EDU53186.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000050|gb|EDU69036.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4076]
 gi|189354975|gb|EDU73394.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4401]
 gi|189360088|gb|EDU78507.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365629|gb|EDU84045.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4501]
 gi|189372472|gb|EDU90888.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC869]
 gi|189376321|gb|EDU94737.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC508]
 gi|208726334|gb|EDZ75935.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4206]
 gi|208732172|gb|EDZ80860.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4045]
 gi|208738172|gb|EDZ85855.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4042]
 gi|209157525|gb|ACI34958.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. EC4115]
 gi|209772518|gb|ACI84571.1| possible protoporphyrinogen oxidase [Escherichia coli]
 gi|209772520|gb|ACI84572.1| possible protoporphyrinogen oxidase [Escherichia coli]
 gi|209772522|gb|ACI84573.1| possible protoporphyrinogen oxidase [Escherichia coli]
 gi|209772524|gb|ACI84574.1| possible protoporphyrinogen oxidase [Escherichia coli]
 gi|209772526|gb|ACI84575.1| possible protoporphyrinogen oxidase [Escherichia coli]
 gi|217318473|gb|EEC26899.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O157:H7 str. TW14588]
 gi|254592082|gb|ACT71443.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290762110|gb|ADD56071.1| Protein-(Glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli O55:H7 str. CB9615]
 gi|320188004|gb|EFW62671.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. EC1212]
 gi|320643226|gb|EFX12427.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H- str. 493-89]
 gi|320648163|gb|EFX16839.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H- str. H 2687]
 gi|320653997|gb|EFX22071.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320659476|gb|EFX27045.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664613|gb|EFX31764.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326342760|gb|EGD66530.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. 1044]
 gi|326346387|gb|EGD70124.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. 1125]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LAR      + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALARERPDCEITAVDRMPDAVALAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|316940665|gb|ADU74699.1| Methyltransferase type 11 [Clostridium thermocellum DSM 1313]
          Length = 220

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 33/60 (55%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +++L CG G  ++ LA++  +V AV+I++  +E  R      ++ N++  ++  +  +
Sbjct: 40  KKVMDLGCGTGRHTIYLAQNGYQVFAVDISETGIEVTRAKAEKLNLTNIEFAQLDMRNLS 99


>gi|300906881|ref|ZP_07124555.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 84-1]
 gi|301305582|ref|ZP_07211673.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           124-1]
 gi|300401314|gb|EFJ84852.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 84-1]
 gi|300839171|gb|EFK66931.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           124-1]
 gi|315254828|gb|EFU34796.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli MS 85-1]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LAR      + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALARERPDCEITAVDRMPDAVALAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|125973110|ref|YP_001037020.1| methyltransferase type 11 [Clostridium thermocellum ATCC 27405]
 gi|256003903|ref|ZP_05428889.1| Methyltransferase type 11 [Clostridium thermocellum DSM 2360]
 gi|125713335|gb|ABN51827.1| Methyltransferase type 11 [Clostridium thermocellum ATCC 27405]
 gi|255992031|gb|EEU02127.1| Methyltransferase type 11 [Clostridium thermocellum DSM 2360]
          Length = 221

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 33/60 (55%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +++L CG G  ++ LA++  +V AV+I++  +E  R      ++ N++  ++  +  +
Sbjct: 41  KKVMDLGCGTGRHTIYLAQNGYQVFAVDISETGIEVTRAKAEKLNLTNIEFAQLDMRNLS 100


>gi|332652543|ref|ZP_08418288.1| ribosomal protein L11 methyltransferase [Ruminococcaceae bacterium
           D16]
 gi|332517689|gb|EGJ47292.1| ribosomal protein L11 methyltransferase [Ruminococcaceae bacterium
           D16]
          Length = 323

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A      D+L+L CG+G  S+  L       LAV+I   +V+ A  N A N +   + 
Sbjct: 172 VEAHTKAGDDVLDLGCGSGILSIAALVLGASHALAVDIDPKAVDVAYENAALNGIGKDRY 231

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
              +    + A        +   + + +     I 
Sbjct: 232 TVRAGDVLSDAALAAEIAQQRYPLVLANIVADVII 266


>gi|329947105|ref|ZP_08294481.1| methyltransferase small domain protein [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526282|gb|EGF53299.1| methyltransferase small domain protein [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 202

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 19/115 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +L+ V        G  L+L CG G  +L LA       VLAV++ + S+     N  
Sbjct: 46  TQVLLDHV--PDPPETGSFLDLGCGWGPITLALADAASGATVLAVDVNERSLALTARNAE 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDD 306
              ++NV+     +               L ++   S     I+ +PP R G + 
Sbjct: 104 TAGLDNVRTSPAEA--------------LLTELRESSRTVDLIWSNPPVRIGKEA 144


>gi|307352708|ref|YP_003893759.1| hypothetical protein Mpet_0547 [Methanoplanus petrolearius DSM
           11571]
 gi|307155941|gb|ADN35321.1| protein of unknown function Met10 [Methanoplanus petrolearius DSM
           11571]
          Length = 304

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +AA       LL+++ G G F++ L+     V A +I   +V     NI  N   N+  V
Sbjct: 155 IAAMMKDGERLLDMFAGVGPFAITLSGKCSVVYANDINPAAVSLLADNIRLNKKKNILPV 214

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
              ++        E     + ++ + S  F
Sbjct: 215 LADARRLGSIFPPENFDRIIMNLPMKSSEF 244


>gi|294815916|ref|ZP_06774559.1| Putative methyltransferase-UbiE family [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328515|gb|EFG10158.1| Putative methyltransferase-UbiE family [Streptomyces clavuligerus
           ATCC 27064]
          Length = 286

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R   NS          ++L  +          +L++ CG G  +  LA      R
Sbjct: 32  RSHTWRTAANS--------AAYLLGELSEL--PPDARVLDIGCGPGTITADLAALVPHGR 81

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           V  V+     VE AR + A   + N           
Sbjct: 82  VTGVDRDPGVVERARAHAAGRGLANADFAVADVNAL 117


>gi|239817176|ref|YP_002946086.1| modification methylase, HemK family [Variovorax paradoxus S110]
 gi|239803753|gb|ACS20820.1| modification methylase, HemK family [Variovorax paradoxus S110]
          Length = 283

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 22/125 (17%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNI 251
              +++W L   +G     +L+L  G+G  +L L  AR    V AV+ +  ++  A  N 
Sbjct: 102 TETLVDWALQCLEGRDAPRVLDLGTGSGAIALALQHARPDALVDAVDASADALAVAEANA 161

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +                      F +   +D  +  +  I  +PP     D  +  
Sbjct: 162 QRLGL-------------------PVRFRQAHWLDGAAGGYAVIASNPPYIAAGDPHLAA 202

Query: 312 VQAYP 316
           +Q  P
Sbjct: 203 LQHEP 207


>gi|213967223|ref|ZP_03395372.1| hemK protein [Pseudomonas syringae pv. tomato T1]
 gi|301381041|ref|ZP_07229459.1| hemK protein [Pseudomonas syringae pv. tomato Max13]
 gi|302060377|ref|ZP_07251918.1| hemK protein [Pseudomonas syringae pv. tomato K40]
 gi|302134867|ref|ZP_07260857.1| hemK protein [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928065|gb|EEB61611.1| hemK protein [Pseudomonas syringae pv. tomato T1]
 gi|331018121|gb|EGH98177.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAQVLDLGTGTGAIALALANDRQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++N ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDNAQV-----------------LNSHWFSALEGRQFDLIISNPP 185


>gi|168233806|ref|ZP_02658864.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194470184|ref|ZP_03076168.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456548|gb|EDX45387.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205332122|gb|EDZ18886.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPLKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|167755339|ref|ZP_02427466.1| hypothetical protein CLORAM_00853 [Clostridium ramosum DSM 1402]
 gi|167704278|gb|EDS18857.1| hypothetical protein CLORAM_00853 [Clostridium ramosum DSM 1402]
          Length = 400

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 17/121 (14%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            VL         +L+ +   G F+L  A      V+AV++++ +++    N   N++   
Sbjct: 219 RVLLRNIAYGKKVLDCFSHTGGFALNAAYGKAKEVVAVDVSQTALDQGYANAKLNNLQGC 278

Query: 260 -KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPH 317
              V+    ++    ++               +F  I +DPP       TV      Y  
Sbjct: 279 ISFVKDDVFDYLDKCKK--------------GQFDIIVLDPPAFTKSRRTVDHAYNGYKK 324

Query: 318 I 318
           I
Sbjct: 325 I 325


>gi|52081111|ref|YP_079902.1| SAM dependent methyltransferase [Bacillus licheniformis ATCC 14580]
 gi|52786489|ref|YP_092318.1| YqeM [Bacillus licheniformis ATCC 14580]
 gi|52004322|gb|AAU24264.1| SAM dependent methyltransferase [Bacillus licheniformis ATCC 14580]
 gi|52348991|gb|AAU41625.1| YqeM [Bacillus licheniformis ATCC 14580]
          Length = 251

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E  + A +  +  +L+L CG G  S+ LA     V  ++I++  +  A+Y  A   ++ 
Sbjct: 26  IEQTIGAQQKERIRVLDLACGTGEISVRLAEKGYDVTGIDISEDMLAQAQYKAAVRQLD- 84

Query: 259 VKIVRMSSKEFT 270
           ++  +   +E  
Sbjct: 85  IQFFQQDMRELA 96


>gi|284165470|ref|YP_003403749.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284015125|gb|ADB61076.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 266

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 192 AGINVHMLEWVL----AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
             +  +ML  +     AA       +L++ CG GN +L   R    V+ +++A   +E A
Sbjct: 22  PAMAPNMLPAIARLVNAAGIDPGNRVLDVGCGTGNAALTARRSGADVVGLDLAHDMLELA 81

Query: 248 RYNIAANHVNNVKIVRMSSKEF 269
           R N A    +++  +   ++  
Sbjct: 82  RENAALAGYDDIGWLTGDAEAL 103


>gi|227893053|ref|ZP_04010858.1| hypothetical protein HMPREF0548_0576 [Lactobacillus ultunensis DSM
           16047]
 gi|227865166|gb|EEJ72587.1| hypothetical protein HMPREF0548_0576 [Lactobacillus ultunensis DSM
           16047]
          Length = 54

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 313 QAYPHILYISCNPDSLCRDLSILST-THTIERLALFDQFPYTRHMECGVLLVRK 365
                ++Y+S +P +L RD+   S   +  + +   D  P    ++   LL  K
Sbjct: 1   MGVKKVVYVSASPATLVRDIKEASKYGYHCDHITPIDLAPQKSEIKSVTLLQLK 54


>gi|261343908|ref|ZP_05971553.1| protein-(glutamine-N5) methyltransferase [Providencia rustigianii
           DSM 4541]
 gi|282568294|gb|EFB73829.1| protein-(glutamine-N5) methyltransferase [Providencia rustigianii
           DSM 4541]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L LA  R    V+ V+    +V  A  N     
Sbjct: 98  LVEQALIRLPSTDCRILDLGTGTGAIALALASERPNSTVIGVDFNPEAVVLAERNQQRLS 157

Query: 256 VNNVKIVRMS 265
           + NV+  +  
Sbjct: 158 IFNVRFSQSD 167


>gi|125623425|ref|YP_001031908.1| putative protoporphyrinogen oxidase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124492233|emb|CAL97162.1| putative protoporphyrinogen oxidase [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070172|gb|ADJ59572.1| putative protoporphyrinogen oxidase [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 270

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 37/188 (19%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L +  L+ +   +  + L   L  R     LI       I    ++ + +  V  R LI 
Sbjct: 33  LSWLNLMREKITDQELNLLTELSER-----LIKNEPPQYIVGWAEFYELKFKVDERVLIP 87

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVE 238
           R                ++E +L         +L++  G+G  ++ LA  R    V A +
Sbjct: 88  RPE-----------TEELVEMILTENNNDSLKILDIGTGSGAIAISLAKARQNWSVKASD 136

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I++ ++E A  N   NHV N++ ++                     +D  + RF  I  +
Sbjct: 137 ISQNALELAAENAKMNHV-NLEFIQSDV------------------MDELTDRFDIIVSN 177

Query: 299 PPRSGLDD 306
           PP    D+
Sbjct: 178 PPYIAFDE 185


>gi|325957949|ref|YP_004289415.1| Ribosomal RNA small subunit methyltransferase A [Methanobacterium
           sp. AL-21]
 gi|325329381|gb|ADZ08443.1| Ribosomal RNA small subunit methyltransferase A [Methanobacterium
           sp. AL-21]
          Length = 273

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N  +N  +L  ++  ++  + D +LE+  G G  ++ LA++  +V AVE    +    + 
Sbjct: 23  NYLVNRDILSKIIQNSELSKNDRVLEIGAGIGTLTIPLAKNAGKVYAVEQDGKAANVLKK 82

Query: 250 NIAANHVNNVKIVRMSSKE 268
            +    ++NV+++   + +
Sbjct: 83  RLEKLELDNVEVIVEDATK 101


>gi|126179185|ref|YP_001047150.1| protein of unknown function Met10 [Methanoculleus marisnigri JR1]
 gi|125861979|gb|ABN57168.1| methyltransferase [Methanoculleus marisnigri JR1]
          Length = 289

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F+Q N   N       +AA       + +++ G G F++  A    RV A+EI   + E 
Sbjct: 132 FSQGNR--NEKAR---IAALVRPGERVADMFAGIGYFTIPAAMSGARVHAMEINPIAFEY 186

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            + NI ANHV     V     +    +    +   +   D  S     + 
Sbjct: 187 LQRNIMANHV--ADRVTAELGDCRDLLAGVYDRVLMGHFDAPSMLADALA 234


>gi|301609194|ref|XP_002934152.1| PREDICTED: trimethylguanosine synthase-like [Xenopus (Silurana)
           tropicalis]
          Length = 845

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 181 RQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           +  E  +       I  H+   V  +     G +++ +CG G  ++  A+  +RV+AV+I
Sbjct: 660 KLDEEGWFSVTPEKIAEHIASRVRQSCD--CGVVVDAFCGVGGNAIQFAKAGNRVIAVDI 717

Query: 240 AKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREF 279
               ++ AR N     V + ++ +R       Q ++ +  F
Sbjct: 718 DPVKLDFARNNAEVYGVTDRIEFIRGDFMLLAQDLKADAVF 758


>gi|145596154|ref|YP_001160451.1| HemK family modification methylase [Salinispora tropica CNB-440]
 gi|145305491|gb|ABP56073.1| modification methylase, HemK family [Salinispora tropica CNB-440]
          Length = 309

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARH-- 230
             R L        F          +  W V  A +     +++L  G+G  +L +A+   
Sbjct: 87  PFRHLELAVGPGVF--VPRPETELLAGWGVEQARREAAPLVVDLCSGSGAIALAVAQEVP 144

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             RV+AVE +  ++   R N  +      + V + + + T +   +    R+  +  +  
Sbjct: 145 AARVVAVEGSPAALSWLRRNATSRAAVGDRPVEVVAADVTASDLLDDLLGRVDVLLCNPP 204

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYP 316
                 V PP     D    +     
Sbjct: 205 YVPAGVVVPPEVSRHDPARAVFAGMD 230


>gi|86749135|ref|YP_485631.1| ribosomal L11 methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86572163|gb|ABD06720.1| LSU ribosomal protein L11P methyltransferase [Rhodopseudomonas
           palustris HaA2]
          Length = 296

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYN 250
               + +L+ VL A  G    +L+L  G G  ++  A+   + VLA +I + SV  AR N
Sbjct: 139 TRGCLTLLDLVLRA--GPPRSVLDLGTGTGVLAIAAAKALRQPVLATDIDRQSVAVAREN 196

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              N V N+     ++   + A      F+
Sbjct: 197 ARLNGVGNLVHAEWATGFASPAFAAHAPFD 226


>gi|7243167|dbj|BAA92631.1| KIAA1393 protein [Homo sapiens]
          Length = 500

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 97/273 (35%), Gaps = 24/273 (8%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + +F   +  K  + +   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 134 YKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTS--GF 191

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT---- 172
           + +  I H  L D        +   +  +   I            + R++  E L+    
Sbjct: 192 SRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQN 251

Query: 173 ----VAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
               V      Y   E  F++   N  ++    E          GD+L +++ G G F++
Sbjct: 252 MMTKVRENNYTY---EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAI 305

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKD 284
            +A+    V A ++   S +   YN   N V+  VK+  +  K+F Q   +E     L  
Sbjct: 306 PVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGL 365

Query: 285 IDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP 316
                     +   P ++     A   ++   P
Sbjct: 366 SKERKPSVHVVMNLPAKAIKFLSAFKWLLDGQP 398


>gi|295395537|ref|ZP_06805731.1| methylase of polypeptide chain release factors [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971556|gb|EFG47437.1| methylase of polypeptide chain release factors [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 534

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 18/90 (20%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
              L+L  G G  ++ LARH D V+A +I+  ++   R N   N  +N++    S  E T
Sbjct: 173 HTALDLGTGCGIQAIALARHCDHVIATDISARALAFTRANATLNGAHNIETREGSLFEPT 232

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                               +F  I  +PP
Sbjct: 233 P------------------EQFDLIVSNPP 244


>gi|256810827|ref|YP_003128196.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus fervens AG86]
 gi|256794027|gb|ACV24696.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanocaldococcus fervens AG86]
          Length = 180

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 36/67 (53%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++ CG+G  ++ +AR    V A++  + ++   + N+A  ++ N +++   +++    
Sbjct: 36  VVDIGCGSGGMTVEIARRCKFVYAIDYEEEAINLTKQNLAKFNIKNCQVIMGRAEDILNN 95

Query: 273 MRREREF 279
           +   + F
Sbjct: 96  LEFNKAF 102


>gi|20094927|ref|NP_614774.1| rRNA/ tRNA methylase [Methanopyrus kandleri AV19]
 gi|19888169|gb|AAM02704.1| Predicted rRNA/ tRNA methylase [Methanopyrus kandleri AV19]
          Length = 196

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 34/133 (25%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVL 227
           RL +     +Y   E+SF              +LA  +G+ G   +L++  G G   L  
Sbjct: 13  RLKLLVFENVYPPAEDSF--------------LLAEHQGVSGSERVLDVGTGCGIQGLSA 58

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A     V+A ++   +V  AR+N   N + N+ +      E                  +
Sbjct: 59  AAKGCEVVATDVNPAAVHCARWNAHLNDL-NIDVRVGDLFE-----------------PV 100

Query: 288 HSYRFKTIFVDPP 300
              RF  +  +PP
Sbjct: 101 RDERFDIVLFNPP 113


>gi|256027763|ref|ZP_05441597.1| methyltransferase [Fusobacterium sp. D11]
          Length = 383

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 64/160 (40%), Gaps = 32/160 (20%)

Query: 163 DRDYVDERLTV---AGRTLIYRQIENSF----TQPNAGI------NVHMLEWVLAATKGI 209
           D+D + E L +     + L Y   E  F     + N G+         ++E  +   + +
Sbjct: 135 DKDKIREMLVLRAKKRKPLQYILGEWEFYGLPFKVNEGVLIPRADTEILVEQCIQLMREV 194

Query: 210 Q-GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +  ++L++  G+G  S+ +A       +  ++I + +++ A  N   N + NV  +    
Sbjct: 195 EEPNILDIGSGSGAISIAIANELKSSSITGIDINEKAIKLANENKILNKIENVNFI---- 250

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                      E N  + +D   +++  I  +PP    ++
Sbjct: 251 -----------ESNLFEKLD-KDFKYDLIVSNPPYISKEE 278


>gi|126740647|ref|ZP_01756333.1| hypothetical protein RSK20926_16817 [Roseobacter sp. SK209-2-6]
 gi|126718162|gb|EBA14878.1| hypothetical protein RSK20926_16817 [Roseobacter sp. SK209-2-6]
          Length = 404

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            A      G++L+++   G F L + A    +V  V+ +  ++E A     A+   +   
Sbjct: 223 AARLVPEDGEVLDVFSHVGGFGLAMRAAGAAQVTCVDGSAAALELAGQGATASGFGDSFT 282

Query: 262 VR-MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
            R   + E   A+  E              RF  +  DPP        +   ++AY  I 
Sbjct: 283 ARQGDAFEQLTALAEE------------GKRFDVVICDPPAFAPSKPALEAGLRAYERIA 330


>gi|74312448|ref|YP_310867.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella sonnei Ss046]
 gi|191166624|ref|ZP_03028452.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli B7A]
 gi|218694726|ref|YP_002402393.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli 55989]
 gi|300821018|ref|ZP_07101167.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           119-7]
 gi|307310033|ref|ZP_07589683.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli W]
 gi|309794303|ref|ZP_07688727.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           145-7]
 gi|331676992|ref|ZP_08377688.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli H591]
 gi|73855925|gb|AAZ88632.1| possible protoporphyrinogen oxidase [Shigella sonnei Ss046]
 gi|190903273|gb|EDV62994.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli B7A]
 gi|218351458|emb|CAU97166.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli 55989]
 gi|300526317|gb|EFK47386.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           119-7]
 gi|306909751|gb|EFN40245.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli W]
 gi|308122208|gb|EFO59470.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           145-7]
 gi|315060463|gb|ADT74790.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli W]
 gi|320199251|gb|EFW73842.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli EC4100B]
 gi|323168382|gb|EFZ54063.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella sonnei 53G]
 gi|323172434|gb|EFZ58071.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli LT-68]
 gi|323185626|gb|EFZ70987.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli 1357]
 gi|323378973|gb|ADX51241.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli KO11]
 gi|331075681|gb|EGI46979.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli H591]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|330812398|ref|YP_004356860.1| hypothetical protein PSEBR_a5353 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380506|gb|AEA71856.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 398

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 84/283 (29%), Gaps = 47/283 (16%)

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHR 125
            +   +  SLL++ L + +     +  +P  R      D L      +    +V  I   
Sbjct: 73  DVKLPLDKSLLVHRLNVALSLRERLFDKPFYRLVYGDSDLLPGLVVDRFGDILVVQIASA 132

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDYVDERLTVAGRTL 178
            ++    +    L   L       +    A          +       V E + +    +
Sbjct: 133 TMEAHKDDVIAALTQVLKPSGILFKNDSAARDAEGLTRYVETVFG--LVPEWVALEENGV 190

Query: 179 IYR--QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVL 235
            +    +E    Q       H +     A       +L+L+   G + +   A     V 
Sbjct: 191 KFEAPVMEG---QKTGWFYDHRMNRARLAPYAKGKRVLDLFSYIGGWGVQAAAFGASEVF 247

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            V+ +  +++    N A N           +++ T        F  LK++     RF  I
Sbjct: 248 CVDASAFALDGVERNAALNGF---------AEKLT--CIEGDVFEALKELKASEERFDVI 296

Query: 296 FVDPPRSG---------------LDDATVGMVQAYPHILYISC 323
             DPP                  L++  + ++     ++  SC
Sbjct: 297 VADPPAFIKRKKDLKNGEGAYRRLNEQAMRLLSKDGILVSASC 339


>gi|294631618|ref|ZP_06710178.1| RsmD family RNA methyltransferase [Streptomyces sp. e14]
 gi|292834951|gb|EFF93300.1| RsmD family RNA methyltransferase [Streptomyces sp. e14]
          Length = 195

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L  L+R     L VE    +    R N+ +  +   ++    +++  
Sbjct: 49  RVLDLYAGSGAVGLEALSRGAGHTLLVEADARAARIVRENVKSLGLPGAEVRTGKAEQIV 108

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           Q+                +  +  +F+DPP +  DD    ++
Sbjct: 109 QS-------------PPPAGPYDIVFLDPPYAVTDDDLREIL 137


>gi|256823778|ref|YP_003147741.1| methyltransferase [Kangiella koreensis DSM 16069]
 gi|256797317|gb|ACV27973.1| methyltransferase [Kangiella koreensis DSM 16069]
          Length = 203

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 24/135 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             +  W+     G   + L+L+ G+G   +  L+R       VE+ + +      N+   
Sbjct: 55  ETLFNWLQNEIHG--ANCLDLFAGSGAIGIEALSRGASEASFVELNRKAFHQLEENLGLV 112

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
           + +N  ++   + +F Q+ ++                F  IF+DPP   G+    +  + 
Sbjct: 113 NADNAYVMHGDAFDFIQSNQK---------------SFDIIFLDPPFHKGIAQKVIEQLD 157

Query: 314 AYPHILYISCNPDSL 328
           A   +      P++L
Sbjct: 158 AAEWL-----KPETL 167


>gi|326444253|ref|ZP_08218987.1| hypothetical protein SclaA2_24444 [Streptomyces clavuligerus ATCC
           27064]
          Length = 272

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R   NS          ++L  +          +L++ CG G  +  LA      R
Sbjct: 18  RSHTWRTAANS--------AAYLLGELSEL--PPDARVLDIGCGPGTITADLAALVPHGR 67

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           V  V+     VE AR + A   + N           
Sbjct: 68  VTGVDRDPGVVERARAHAAGRGLANADFAVADVNAL 103


>gi|317507641|ref|ZP_07965353.1| methyltransferase domain-containing protein [Segniliparus rugosus
           ATCC BAA-974]
 gi|316254078|gb|EFV13436.1| methyltransferase domain-containing protein [Segniliparus rugosus
           ATCC BAA-974]
          Length = 200

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +++          G  L++ CG G+ ++ LAR   RV  V+    ++  AR   A+  
Sbjct: 29  AELVDGDGERPALAPGRALDVGCGTGDAAIYLARRGWRVTGVDFTPKALRLARRKAASAG 88

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            + +  V     +  +   +   F+ + D  +             R+G       +  
Sbjct: 89  AD-IDFVHADVTKLRENGLQPG-FDLIVDFGLLHGVDD-----KTRAGYAREVSALAA 139


>gi|310820054|ref|YP_003952412.1| ArsR family transcriptional regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393126|gb|ADO70585.1| Transcriptional regulator, ArsR family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 298

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 193 GINVHMLE-------WVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +N  +LE       W  A    +   D+ +  CG+G  S+ +AR   RV A++    ++
Sbjct: 110 ALNERLLEPGQSWSLWASALASLLPPLDVADFGCGSGTLSVAIARWARRVWAIDQNPEAL 169

Query: 245 EAARYNIAANHVNNVKIVR 263
             A+        +N++ + 
Sbjct: 170 AQAKERATREGRSNIQFLC 188


>gi|289547839|ref|YP_003472827.1| ribosomal L11 methyltransferase [Thermocrinis albus DSM 14484]
 gi|289181456|gb|ADC88700.1| ribosomal L11 methyltransferase [Thermocrinis albus DSM 14484]
          Length = 239

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 19/107 (17%)

Query: 169 ERLTVAGRTLIYR-QIENSF---------TQPNAGIN--------VHMLEWVLAATKGIQ 210
           + + +  +  I+R     SF            N G+           +   ++       
Sbjct: 51  QEVKIVPQERIFRPFTVGSFLIHRPDLIPISVNPGMAFGTGLHPTTKVCLRLIEKYFLPG 110

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV 256
              L++ CG+G  S+ LA+     VLA++I + +VE  + N   N V
Sbjct: 111 WTALDVGCGSGILSIALAKLGAREVLAIDIDERAVEETKENAKRNGV 157


>gi|254440168|ref|ZP_05053662.1| Methyltransferase domain family [Octadecabacter antarcticus 307]
 gi|198255614|gb|EDY79928.1| Methyltransferase domain family [Octadecabacter antarcticus 307]
          Length = 210

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             G    +LE+ CG G+ +L+LA H   ++  +++   V+ AR    A  + N      +
Sbjct: 36  YLGANDRVLEMGCGTGSTALLLAPHVRDIIGTDLSPAMVDIARAKADAGGIKNASFRVAT 95

Query: 266 SKE 268
           + E
Sbjct: 96  ASE 98


>gi|295401929|ref|ZP_06811892.1| methyltransferase small [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109252|ref|YP_003987568.1| methyltransferase small [Geobacillus sp. Y4.1MC1]
 gi|294976059|gb|EFG51674.1| methyltransferase small [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214353|gb|ADP72957.1| methyltransferase small [Geobacillus sp. Y4.1MC1]
          Length = 200

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 30/116 (25%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             + G  L++ CG G   L +A+ F    V  ++I K ++E A  N   NH+ NV I   
Sbjct: 56  PDVDGGFLDVGCGYGPIGLAVAKSFPNRHVDMIDINKRALELANENKRVNHIANVSIYES 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
              E                  +   +F  I  +PP           ++A   ++Y
Sbjct: 116 DLFE-----------------QVGDKKFAAILTNPP-----------IRAGKRVVY 143


>gi|153003322|ref|YP_001377647.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5]
 gi|152026895|gb|ABS24663.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. Fw109-5]
          Length = 439

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 23/146 (15%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH---FDRVLAVEIAKPSV 244
            Q        +  +     +G +  +L+     G  +  LA        V+AVE+     
Sbjct: 230 FQVQDEAAQLVTLYAAGGLRGTRARVLDACAAPGGKAFHLAEQLAPGSEVVAVELHPRKA 289

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E      A   +  V++V   +                    + +  F  + VD P +GL
Sbjct: 290 EELAREAARRGLAGVRVVCADAAR--------------PIPGLEAGSFDAVLVDAPCAGL 335

Query: 305 DDATVGMVQAYPHILYISCNPDSLCR 330
                        +      P+ L R
Sbjct: 336 GTLRRHPELKLRRV------PEDLAR 355


>gi|186683603|ref|YP_001866799.1| methyltransferase type 11 [Nostoc punctiforme PCC 73102]
 gi|186466055|gb|ACC81856.1| Methyltransferase type 11 [Nostoc punctiforme PCC 73102]
          Length = 248

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N  + V ++E +L      +  +L+L CG G  +  L     +V  ++ ++        
Sbjct: 23  VNYDVWVELMEKLLLQYLPKEAHILDLCCGTGPVAQRLLLMGYQVTGLDGSEEM-----L 77

Query: 250 NIAANHVNNVKIVRMSSKEF 269
           N+A     +VK ++  ++ F
Sbjct: 78  NLARQKAPSVKFLQGDARFF 97


>gi|302142307|emb|CBI19510.3| unnamed protein product [Vitis vinifera]
          Length = 683

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
            G +++ + G G  ++  A+    V+A++I    +E A++N A   V++ +  ++  S  
Sbjct: 515 SGIIVDCFTGVGGNAIQFAQRSKHVIAIDIDPKKIEYAQHNAAIYGVDDRIDFIKGDSFL 574

Query: 269 FTQAMRREREF--NRLKDID-IHSYRFKTIFVDPPRSG 303
               ++ +  F        D      +    +  P  G
Sbjct: 575 LASTLKADTVFLSPPWGGPDYAKVETYDIKTMLKPHDG 612


>gi|225458633|ref|XP_002282801.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 780

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
            G +++ + G G  ++  A+    V+A++I    +E A++N A   V++ +  ++  S  
Sbjct: 612 SGIIVDCFTGVGGNAIQFAQRSKHVIAIDIDPKKIEYAQHNAAIYGVDDRIDFIKGDSFL 671

Query: 269 FTQAMRREREF--NRLKDID-IHSYRFKTIFVDPPRSG 303
               ++ +  F        D      +    +  P  G
Sbjct: 672 LASTLKADTVFLSPPWGGPDYAKVETYDIKTMLKPHDG 709


>gi|158522668|ref|YP_001530538.1| hypothetical protein Dole_2658 [Desulfococcus oleovorans Hxd3]
 gi|158511494|gb|ABW68461.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3]
          Length = 325

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 18/119 (15%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRV-LAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                D L L+C +G F+   AR   R   +V+ ++ ++  AR N+A N + +       
Sbjct: 156 MADGKDFLNLFCYSGTFTCYAARGGARSTTSVDRSRTAIRWARENMALNSIPSK------ 209

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVGMVQAYPHIL 319
                  + +   F+ L+     + RF    VDPP     R G  +  + +V+ +P +L
Sbjct: 210 ----GHTLVQAHVFDFLEKAAADARRFDLAIVDPPSFATSRDGAHN--MDIVKDHPRLL 262


>gi|115378884|ref|ZP_01466022.1| SAM-dependent methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115364123|gb|EAU63220.1| SAM-dependent methyltransferase [Stigmatella aurantiaca DW4/3-1]
          Length = 276

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 193 GINVHMLE-------WVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
            +N  +LE       W  A    +   D+ +  CG+G  S+ +AR   RV A++    ++
Sbjct: 88  ALNERLLEPGQSWSLWASALASLLPPLDVADFGCGSGTLSVAIARWARRVWAIDQNPEAL 147

Query: 245 EAARYNIAANHVNNVKIVR 263
             A+        +N++ + 
Sbjct: 148 AQAKERATREGRSNIQFLC 166


>gi|257888043|ref|ZP_05667696.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,141,733]
 gi|257896338|ref|ZP_05675991.1| rRNA small subunit methyltransferase C [Enterococcus faecium Com12]
 gi|257899313|ref|ZP_05678966.1| rRNA small subunit methyltransferase C [Enterococcus faecium Com15]
 gi|257824097|gb|EEV51029.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,141,733]
 gi|257832903|gb|EEV59324.1| rRNA small subunit methyltransferase C [Enterococcus faecium Com12]
 gi|257837225|gb|EEV62299.1| rRNA small subunit methyltransferase C [Enterococcus faecium Com15]
          Length = 201

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 19/125 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
             +++         +G +L++ CG G   L LA    R V  V+I + +V  A+ N   N
Sbjct: 47  RVLIDAFDWEELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVSLAQGNAKRN 106

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
            +  V I + +  E                  +H   +  I  +PP R+G       +  
Sbjct: 107 QIEQVDIHQSNIYEV-----------------LHEETYAAIVSNPPIRAGKKVVHEILTG 149

Query: 314 AYPHI 318
           AYP +
Sbjct: 150 AYPRL 154


>gi|239944592|ref|ZP_04696529.1| putative RNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|239991054|ref|ZP_04711718.1| putative RNA methylase [Streptomyces roseosporus NRRL 11379]
 gi|291448056|ref|ZP_06587446.1| RNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291351003|gb|EFE77907.1| RNA methylase [Streptomyces roseosporus NRRL 15998]
          Length = 194

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 14/113 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           W           + +LY G+G   L  L+R     L VE    +V   R N+    +   
Sbjct: 37  WQALLGTLEGTRVADLYAGSGAVGLEALSRGAVHALLVEADPKAVRTVRDNVRTLGLPGA 96

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           ++    +++                    S  +  +F+DPP +  DD    ++
Sbjct: 97  EVRAGKAEQIVTG-------------PAPSDPYDIVFLDPPYAVTDDDLREIL 136


>gi|229552941|ref|ZP_04441666.1| methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|229313685|gb|EEN79658.1| methyltransferase [Lactobacillus rhamnosus LMS2-1]
          Length = 206

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 21/121 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
             ++  VLA T    G +L++  G G   L LA+HF   +V   ++ + ++  A+ N A 
Sbjct: 54  RVLIAAVLAETLP-DGPILDVGAGYGPIGLALAKHFPNRQVTMSDVNERALALAKQNAAD 112

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + NV I+  S                    D    +F  +  +PP         G++ 
Sbjct: 113 NGITNVSIIESSM------------------YDSIDDQFAVVVTNPPIRAGKAIVSGILS 154

Query: 314 A 314
            
Sbjct: 155 G 155


>gi|149278269|ref|ZP_01884407.1| PUA domain containing protein [Pedobacter sp. BAL39]
 gi|149231035|gb|EDM36416.1| PUA domain containing protein [Pedobacter sp. BAL39]
          Length = 394

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            ++ +       +L+ +C +G FSL  L +    V +V+ +  ++E  ++N+  N  +  
Sbjct: 210 RLILSEYTKGKKVLDCFCYSGGFSLNSLKQGAAEVTSVDSSPLAIETLQHNLQLNGFD-A 268

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            + +    +  + +R  +E  R         +F  I +DPP+     + + 
Sbjct: 269 SLQQSIQSDVNKQLRVFKEEGR---------KFDVIVLDPPKYAPSRSALD 310


>gi|291482478|dbj|BAI83553.1| hypothetical protein BSNT_00207 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 201

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             ++G  L++ CG G   L LA  F    +  +++ + +VE +  N   N + NVKI + 
Sbjct: 56  PEVEGSFLDVGCGYGPIGLSLASDFKDRTIHMIDVNERAVELSNENAEQNGITNVKIYQS 115

Query: 265 S 265
            
Sbjct: 116 D 116


>gi|222102647|ref|YP_002539686.1| hypothetical protein Avi_7304 [Agrobacterium vitis S4]
 gi|221739248|gb|ACM39981.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 296

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E V+       G +L+L CG G  +  L+     V+ ++ +   +  AR N       +
Sbjct: 35  IERVVLPHVPAGGAILDLCCGTGQLAAALSERGFNVIGLDGSADMLRYARENA-----PS 89

Query: 259 VKIVRMSSKEFT 270
           V      +  FT
Sbjct: 90  VTFTEGDACNFT 101


>gi|91227503|ref|ZP_01261840.1| hypothetical protein V12G01_09647 [Vibrio alginolyticus 12G01]
 gi|269968644|ref|ZP_06182641.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|91188527|gb|EAS74819.1| hypothetical protein V12G01_09647 [Vibrio alginolyticus 12G01]
 gi|269826731|gb|EEZ81068.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 199

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G       +R  ++V  VE+   + +  + N+A
Sbjct: 46  VKETLFNWLAQDVP--QAKCLDLFAGSGGLGFESASRQAEQVTMVELNPQAFQQLQKNVA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           + + NN+++V   +  F +                       +F+DPP R GL D TV +
Sbjct: 104 SLNANNIQVVNTDALSFLKQ---------------PGSAHHVVFIDPPFRKGLLDETVAL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LEQNGWLAEDAMIYI 163


>gi|116511388|ref|YP_808604.1| methylase of polypeptide chain release factor [Lactococcus lactis
           subsp. cremoris SK11]
 gi|116107042|gb|ABJ72182.1| Methylase of polypeptide chain release factor [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 271

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 37/188 (19%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           L +  L+ +   +  + L   L  R     LI       I    ++ + +  V  R LI 
Sbjct: 33  LSWLNLMREKITDQELNLLTELSER-----LIKNEPPQYIVGWAEFYELKFKVDERVLIP 87

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVE 238
           R                ++E +L         +L++  G+G  ++ LA  R    V A +
Sbjct: 88  RPE-----------TEELVEMILTENNNDSLKILDIGTGSGAIAISLAKARQNWSVKASD 136

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I++ ++E A  N   NHV N++ ++                     +D  + RF  I  +
Sbjct: 137 ISQNALELAAENAKMNHV-NLEFIQSDV------------------MDELTDRFDIIVSN 177

Query: 299 PPRSGLDD 306
           PP    D+
Sbjct: 178 PPYIAFDE 185


>gi|238913675|ref|ZP_04657512.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|15669118|ref|NP_247923.1| protoporphyrinogen oxidase HemK [Methanocaldococcus jannaschii DSM
           2661]
 gi|3024936|sp|Q58338|Y928_METJA RecName: Full=Putative protein methyltransferase MJ0928; AltName:
           Full=M.MjaHemkP
 gi|1591599|gb|AAB98930.1| protoporphyrinogen oxidase (hemK) [Methanocaldococcus jannaschii
           DSM 2661]
          Length = 197

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 20/92 (21%)

Query: 210 QGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             D+LE+  G G  S+  A+    +++ V+I   +V+ A+ N   N+V N+        E
Sbjct: 35  NKDVLEIGVGTGLISIACAKKGAKKIVGVDINPYAVKLAKENAKLNNV-NISFFESDLFE 93

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                                 +F  I  +PP
Sbjct: 94  NVTG------------------KFDVILFNPP 107


>gi|116621515|ref|YP_823671.1| type 11 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224677|gb|ABJ83386.1| Methyltransferase type 11 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 252

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN--IAANHV 256
           LE +        G +L++ CG G  + +L+     V  ++ +   +  AR N   A  H+
Sbjct: 27  LERIWLPRIPEDGRVLDVCCGTGYLAGLLSARGLHVTGIDASPGMIAHARENVPAAEFHI 86

Query: 257 NNVKIVR 263
            +    R
Sbjct: 87  ADASAFR 93


>gi|330723257|gb|AEC45627.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Mycoplasma hyorhinis MCLD]
          Length = 243

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 21/108 (19%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIA 252
              ++        G Q  +L+L CG+G   L +A+     +V+  +I   ++  ++ N  
Sbjct: 69  TEELILQAYKYING-QSTVLDLGCGSGFIGLAIAKNTKAKQVVLSDIDSQAILQSKINAK 127

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N +  VKI++    +                 ++  Y+F  I  +PP
Sbjct: 128 LNKLK-VKIIQSDLFD-----------------NLKKYKFDVIICNPP 157


>gi|330470140|ref|YP_004407883.1| methyltransferase small [Verrucosispora maris AB-18-032]
 gi|328813111|gb|AEB47283.1| methyltransferase small [Verrucosispora maris AB-18-032]
          Length = 204

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 21/127 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +L          +G LL+L CG G  S VLA       V AV++ + + E    N  
Sbjct: 50  TAVLLRKADLPPATTEGALLDLGCGFGPISCVLATVAPTATVWAVDVNERARELTAANAD 109

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
              + +   V                     +       F  I+ +PP R G D+    +
Sbjct: 110 RLGLADRLRVA------------------PPEDVPADLTFAQIWSNPPIRPGKDELHALL 151

Query: 312 VQAYPHI 318
           ++  P +
Sbjct: 152 LRWLPRL 158


>gi|323187442|gb|EFZ72751.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli RN587/1]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAVALAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|316983955|gb|EFV62934.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis H44/76]
          Length = 410

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 175 EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 224

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 225 ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 277

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 278 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 321

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
                G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 322 KHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 372


>gi|256371293|ref|YP_003109117.1| Methyltransferase type 11 [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007877|gb|ACU53444.1| Methyltransferase type 11 [Acidimicrobium ferrooxidans DSM 10331]
          Length = 235

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G   ++++L CG+G  SL  A     V  V+I++  V        A ++ NV       +
Sbjct: 45  GPTDEVVDLGCGSGQVSLPAAAIAHHVHGVDISERMVARLLERARAANLANVTAEATPLE 104

Query: 268 EFT 270
            F 
Sbjct: 105 RFA 107


>gi|15677887|ref|NP_275055.1| hemK protein [Neisseria meningitidis MC58]
 gi|7227327|gb|AAF42384.1| hemK protein [Neisseria meningitidis MC58]
          Length = 423

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 188 EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 237

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 238 ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 290

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 291 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 334

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
                G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 335 KHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 385


>gi|82776552|ref|YP_402901.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella dysenteriae Sd197]
 gi|309789160|ref|ZP_07683753.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella dysenteriae 1617]
 gi|81240700|gb|ABB61410.1| possible protoporphyrinogen oxidase [Shigella dysenteriae Sd197]
 gi|308922914|gb|EFP68428.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella dysenteriae 1617]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LAR      + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALARERPDCEITAVDRMPDAVALAQRNAQHLA 157

Query: 256 VNNVKIVRMS 265
           + N+ I++  
Sbjct: 158 IKNIHILQSD 167


>gi|83594198|ref|YP_427950.1| 50S ribosomal protein L11P methyltransferase [Rhodospirillum rubrum
           ATCC 11170]
 gi|83577112|gb|ABC23663.1| LSU ribosomal protein L11P methyltransferase [Rhodospirillum rubrum
           ATCC 11170]
          Length = 297

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++L++ CG+G  SL  AR F R V AV+I   SV  AR+N   N +     +R       
Sbjct: 160 NILDMGCGSGILSLAAARAFARPVRAVDIDVESVRVARFNAHLNGL--AAFIRAEHGN-- 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
               R R        D+         +  P  GL     G++     ++
Sbjct: 216 --GARGRTVIEGGPYDLILAN----ILARPLCGLARPLAGLLAPKGKVV 258


>gi|268324959|emb|CBH38547.1| hypothetical protein, SAM dependent methyltransferases family
           [uncultured archaeon]
          Length = 305

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 34/80 (42%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +++ W+         +++E+ CG G+ ++ LA+    V A +I   S+          +
Sbjct: 52  QYIVPWIERYIDLENANIVEIGCGTGSLTVALAQSAHHVYAYDIQYTSINMTMRRARIMN 111

Query: 256 VNNVKIVRMSSKEFTQAMRR 275
           + NV      + E   A+ +
Sbjct: 112 LTNVTCYLKETNELLNAVYK 131


>gi|255067757|ref|ZP_05319612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria sicca ATCC
           29256]
 gi|255047968|gb|EET43432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Neisseria sicca ATCC
           29256]
          Length = 704

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSE----PIHYRMRAEFHIWHDGDD 57
             +L       Q+A K   L + +        +           HYR RA   +  D   
Sbjct: 110 GCSLQHVSPTAQVALKQRILEEQLERIGRVKSEQILPPIYGSAWHYRDRARLSVSVDKKG 169

Query: 58  LYHIMF-DQQTKERMRIDYFMPGSLLINALMIEM 90
              + F  ++T E + I+        I+ ++  +
Sbjct: 170 RLKMGFQAKKTNEVVDIETCQVLPKHISDVLPMV 203


>gi|226311627|ref|YP_002771521.1| hypothetical protein BBR47_20400 [Brevibacillus brevis NBRC 100599]
 gi|226094575|dbj|BAH43017.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 431

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 14/112 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
             +        ++LE +   G+F+L        +V A++I++ ++E A+ NI  N  ++ 
Sbjct: 245 KAVKNPFWDGAEVLECFTHTGSFTLNACKHGAKKVTALDISEHAIETAKRNITLNGFLHR 304

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           V  V  ++            F+ L++       +  + +DPP        V 
Sbjct: 305 VDFVVANA------------FDYLRENVEAGKSWDVVILDPPAFAKSRGAVK 344


>gi|242015860|ref|XP_002428565.1| prip interacting protein. pimt, putative [Pediculus humanus
           corporis]
 gi|212513199|gb|EEB15827.1| prip interacting protein. pimt, putative [Pediculus humanus
           corporis]
          Length = 553

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQ 271
           +++ +CG G  S+  A   +RV+A++I    ++ A++N     V + ++ +    K+   
Sbjct: 394 VIDAFCGVGGNSIQFAFTCERVIAIDIDPNKIKLAKHNARIYGVEDRIEFIIGDFKQLAS 453

Query: 272 AMRREREFNRLKDIDIHSYRFKTI---FVDPPRSGLDDATVGMVQAYPHILY 320
           +M  +  F                    + PP  G+    +   +   HI Y
Sbjct: 454 SMWGDVVFLSPPWGGPEYKTLDVYDLGLILPPLGGVGLFNLAS-KITDHIAY 504


>gi|212225087|ref|YP_002308323.1| Hypothetical DNA methylase [Thermococcus onnurineus NA1]
 gi|212010044|gb|ACJ17426.1| Hypothetical DNA methylase [Thermococcus onnurineus NA1]
          Length = 203

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 14/153 (9%)

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI 251
           +   +L W+  +   I G ++ +L  G G  S        +RV AVEI + ++  AR NI
Sbjct: 32  VAAELL-WLAHSLGDIGGKVIADLGAGTGVLSAGACLMGAERVYAVEIDEEALRVARENI 90

Query: 252 AANHVNNV-KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +  + +  + V     +F+  +              H+ R   +       G+ D    
Sbjct: 91  ESLGIEDCVEFVNSDVLDFSARVDTVIMNPPFGSQVKHADRPFLMRA----FGISDVVYS 146

Query: 311 MVQAYPHI-LYISCNPDSLCRDLSILSTTHTIE 342
           +  A P +  +I    ++  RD    S TH I 
Sbjct: 147 IHLAKPEVRRFI----ETFVRDAG-FSITHRIT 174


>gi|146311982|ref|YP_001177056.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterobacter sp. 638]
 gi|145318858|gb|ABP61005.1| [protein release factor]-glutamine N5-methyltransferase
           [Enterobacter sp. 638]
          Length = 276

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 2/127 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R   ++ AV++   +V  A  N+A   
Sbjct: 98  LVEHALARLPATACRILDLGTGTGAIALALASERPDCQITAVDVMPDAVALALRNVARLG 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            NNVKI + S  +     + E   +    ID          V         A    +   
Sbjct: 158 FNNVKIQQSSWFDALVGQQFEMIVSNPPYIDERDPHLSQGDVRFEPLTALVAAEEGLADI 217

Query: 316 PHILYIS 322
            HI+ +S
Sbjct: 218 AHIVTVS 224


>gi|91792281|ref|YP_561932.1| HemK family modification methylase [Shewanella denitrificans OS217]
 gi|91714283|gb|ABE54209.1| modification methylase, HemK family [Shewanella denitrificans
           OS217]
          Length = 284

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/214 (21%), Positives = 77/214 (35%), Gaps = 38/214 (17%)

Query: 108 DYLTSQSDQAIV---TLIYHRLLDDA-----WRECAIRLRDALHARKYQIQLIGRANKTK 159
             L S SD A V    L+ H L         W E A+ ++         ++         
Sbjct: 18  SQLASSSDTAHVDAEVLLLHCLNKPKSFIYTWPEKALSVQQFRAFNNMVLKRQQGVPVAH 77

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++      V   TLI R                ++E  L  T      +L+L  G
Sbjct: 78  IIGEREFWSLPFIVNESTLIPRPD-----------TEILVETALNLTLSPHAKVLDLGTG 126

Query: 220 NGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA  R   +V A++    +VE A+ N    ++  V+I++              
Sbjct: 127 TGAIALSLASERPDWKVTAIDKVDEAVELAKANRQNLNLPQVEILQSD------------ 174

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            F+ +KD D     F  I  +PP    +D  + +
Sbjct: 175 WFSAVKDRD-----FDLIVSNPPYIDAEDEHLNL 203


>gi|297721407|ref|NP_001173066.1| Os02g0606301 [Oryza sativa Japonica Group]
 gi|255671073|dbj|BAH91795.1| Os02g0606301 [Oryza sativa Japonica Group]
          Length = 221

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSK 267
           +GD++ +++ G G FS+  A+    V A ++   SV   R N   N V++      M ++
Sbjct: 99  KGDVICDMFAGIGPFSIPAAQKGCIVYANDLNPDSVRYLRTNAQINKVDDYIFTYNMDAR 158

Query: 268 EFTQAMRR 275
            F Q +  
Sbjct: 159 VFMQNLLE 166


>gi|153001899|ref|YP_001367580.1| PUA domain-containing protein [Shewanella baltica OS185]
 gi|224493224|sp|A6WRS8|RLMI_SHEB8 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|151366517|gb|ABS09517.1| PUA domain containing protein [Shewanella baltica OS185]
          Length = 396

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV--N 257
             +AA       +L  +C  G F L  A+     +  V+++  ++  AR N+  N +  +
Sbjct: 212 RAIAARFVKDKSVLNCFCYTGTFGLYAAKAGAASIENVDVSSLALATARLNMQVNGLSDD 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP 316
           NV        +  +  R E               F  I +DPP+   + A + G  + Y 
Sbjct: 272 NVHYNEADVFKLLRQYRDE------------GKTFDVIVLDPPKFADNKAQLNGACRGYK 319

Query: 317 HILYISCNPDSLCRDLSILSTT-----HTIERLALFDQF 350
            I  I+         L +L+        +   L   D F
Sbjct: 320 DINMIA---------LQLLNPGGVLLTFSCSGLMPADLF 349


>gi|91772684|ref|YP_565376.1| methyltransferase [Methanococcoides burtonii DSM 6242]
 gi|91711699|gb|ABE51626.1| Methyltransferase superfamily protein [Methanococcoides burtonii
           DSM 6242]
          Length = 337

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 12/165 (7%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254
           ++ E    +  G    +++++ G G FS+ LA H    +V ++E+   S      NI  N
Sbjct: 172 NLAEKKRMSKLGKGDVVVDMFAGIGYFSIPLAVHGNPKKVYSIELNPVSYGYLLENIRLN 231

Query: 255 HVNNV-KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL--DDATVGM 311
           H  +V + +  + K+ T     +R             R     +      L   + T   
Sbjct: 232 HQEDVIEAINGNCKDVTPVGIADRVIMGYVGTTHEYLRQGISAIRKEGGTLHYHETTPEC 291

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLAL------FDQF 350
           +     +  I     SL RD+ I+   + I++ +        D F
Sbjct: 292 LVFDRPVQRIKDAVASLGRDVDIMGC-YRIKKYSPGVWHVVVDAF 335


>gi|120597842|ref|YP_962416.1| PUA domain-containing protein [Shewanella sp. W3-18-1]
 gi|146294022|ref|YP_001184446.1| PUA domain-containing protein [Shewanella putrefaciens CN-32]
 gi|224493226|sp|A4Y9L4|RLMI_SHEPC RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|224493228|sp|A1RGR7|RLMI_SHESW RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|120557935|gb|ABM23862.1| SAM-dependent methyltransferase [Shewanella sp. W3-18-1]
 gi|145565712|gb|ABP76647.1| SAM-dependent methyltransferase [Shewanella putrefaciens CN-32]
          Length = 396

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV--N 257
             +AA       +L  +C  G F L  A+     +  V+++  ++  AR N+  N +  +
Sbjct: 212 RAIAARFVKDKSVLNCFCYTGTFGLYAAKAGAASIENVDVSSLALATARLNMQVNGLSDD 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP 316
           NV        +  +  R E               F  I +DPP+   + A + G  + Y 
Sbjct: 272 NVHYNEADVFKLLRQYRDE------------GKTFDVIVLDPPKFADNKAQLNGACRGYK 319

Query: 317 HILYISCNPDSLCRDLSILSTT-----HTIERLALFDQF 350
            I  I+         L +L+        +   L   D F
Sbjct: 320 DINMIA---------LQLLNPGGVLLTFSCSGLMPADLF 349


>gi|293556577|ref|ZP_06675145.1| 16S RNA methylase [Enterococcus faecium E1039]
 gi|293571203|ref|ZP_06682238.1| methyltransferase small domain superfamily [Enterococcus faecium
           E980]
 gi|291601253|gb|EFF31537.1| 16S RNA methylase [Enterococcus faecium E1039]
 gi|291608714|gb|EFF38001.1| methyltransferase small domain superfamily [Enterococcus faecium
           E980]
          Length = 210

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 19/125 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
             +++         +G +L++ CG G   L LA    R V  V+I + +V  A+ N   N
Sbjct: 56  RVLIDAFDWEELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVSLAQGNAKRN 115

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
            +  V I + +  E                  +H   +  I  +PP R+G       +  
Sbjct: 116 QIEQVDIHQSNIYEV-----------------LHEETYAAIVSNPPIRAGKKVVHEILTG 158

Query: 314 AYPHI 318
           AYP +
Sbjct: 159 AYPRL 163


>gi|325678798|ref|ZP_08158396.1| hypothetical protein CUS_8134 [Ruminococcus albus 8]
 gi|324109302|gb|EGC03520.1| hypothetical protein CUS_8134 [Ruminococcus albus 8]
          Length = 287

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 19/147 (12%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK----GIQGDLLELYCGNGN 222
           + E   +    L +      F           + W   A      G    +L L+   G 
Sbjct: 70  LPESWKINYGDLTFVIRPTGFKHT-GLFPEQAVNWNFMADMIKNAGRPIKVLNLFAYTGG 128

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFN 280
            +L  A     V  V+ +K  V+ AR N AA+ +++  ++ +    ++F +   R   F 
Sbjct: 129 ATLACANAGASVSHVDASKGMVQWARDNAAASGLSDKPIRWLVDDCEKFVKREIRRGNF- 187

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                      +  I +DPP  G    
Sbjct: 188 -----------YDGIVMDPPSYGRGPG 203


>gi|200389878|ref|ZP_03216489.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199602323|gb|EDZ00869.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|330810798|ref|YP_004355260.1| methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327378906|gb|AEA70256.1| putative methyltransferase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 254

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            +A      L     A +G    +L+L CG G+ S  +A     V+A ++++  ++    
Sbjct: 26  VHAQGAEFALLQAALAGRG-DARVLDLGCGAGHVSFHVAPLAGEVVAYDLSQQMLDVVAT 84

Query: 250 NIAANHVNNVKIVRMSSKEFTQA 272
             A   + N+  V  +++    A
Sbjct: 85  AAAERGLGNISTVCGAAERLPFA 107


>gi|309792559|ref|ZP_07687021.1| PUA domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225373|gb|EFO79139.1| PUA domain-containing protein [Oscillochloris trichoides DG6]
          Length = 396

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E V A   G   ++L+ +  +G F+L  AR    ++  V+ +  +++ AR ++A N +  
Sbjct: 214 ERVAAYCAG--AEVLDCFTYSGGFALYAARAGAKQLTLVDTSPAALDLARQHLALNQLET 271

Query: 259 -VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             + V     +  +  R E+             RF  I +DPP+       + 
Sbjct: 272 PAEFVEGDVFKVLRTYREEQ------------RRFDVIILDPPKFAHSQKHID 312


>gi|294979860|pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
 gi|294979861|pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
          Length = 276

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 195 NVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYN 250
               LE +L           +LE  CG G  +++LA++     + +++I+  S+E AR N
Sbjct: 21  QAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAREN 80

Query: 251 IAANHVNNVKIVRMS 265
              N + NVK ++ +
Sbjct: 81  TEKNGIKNVKFLQAN 95


>gi|322421516|ref|YP_004200739.1| polysaccharide deacetylase [Geobacter sp. M18]
 gi|320127903|gb|ADW15463.1| polysaccharide deacetylase [Geobacter sp. M18]
          Length = 496

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 36/61 (59%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            ++E+  G G F+L +AR+   VLAV+I+   +E  R    +  ++N++IV+ + +E   
Sbjct: 315 RVMEIGAGTGIFTLDIARNCGEVLAVDISGNMLELLRKKAQSAGIDNIRIVKGNVEEMEP 374

Query: 272 A 272
           A
Sbjct: 375 A 375


>gi|254173527|ref|ZP_04880199.1| methyltransferase [Thermococcus sp. AM4]
 gi|214032219|gb|EEB73049.1| methyltransferase [Thermococcus sp. AM4]
          Length = 387

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                  +     + ++ CG G   +  A   +R   ++I    +E AR N     VNN+
Sbjct: 78  YRAKRLRELGVKSIADVSCGIGIQLIFYAMEVERAYGIDIDPVKIEFARRNAEKYGVNNI 137

Query: 260 KIVRMS--SKEFTQAMRREREFNRLKDIDIHSYR 291
           + +     SKE  + +  E  F+          R
Sbjct: 138 EFINADSLSKEVVERIDAEVVFSDPARPPEAPER 171


>gi|254168426|ref|ZP_04875271.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|289595799|ref|YP_003482495.1| protein of unknown function Met10 [Aciduliprofundum boonei T469]
 gi|197622707|gb|EDY35277.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|289533586|gb|ADD07933.1| protein of unknown function Met10 [Aciduliprofundum boonei T469]
          Length = 311

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNV 259
           W +         + +++ G G FS+++A++   ++ A +I   ++E    NI  N V  +
Sbjct: 153 WRVVQKVKDGETIFDMFAGCGPFSILIAKYKKVKIYACDINPYAIEYLEENIKMNKVKGI 212

Query: 260 KIVRMSSKEFTQAMRREREFNRLK 283
             +   +++  + ++ +R    L 
Sbjct: 213 TPILGDARDVAKEIKADRIIMNLP 236


>gi|77461575|ref|YP_351082.1| SAM-dependent methyltransferase [Pseudomonas fluorescens Pf0-1]
 gi|77385578|gb|ABA77091.1| SAM-dependent methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 398

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 35/112 (31%), Gaps = 14/112 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N   + 
Sbjct: 212 RARLAPYAKGKRVLDLYSYIGGWGVQAAAFGASEVFCVDASGFALDGVERNAALNGFADK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +  +                F  LK++     RF  I  DPP        + 
Sbjct: 272 MTCIEGDV------------FEALKELKASEERFDVIVADPPAFIKRKKDLK 311


>gi|332366922|gb|EGJ44663.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           SK1059]
          Length = 276

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 48/242 (19%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           +  L  E++A       L      ++ L+        T    +L  +  +E   +L+   
Sbjct: 7   LAELEQELVAAGEEAESLSFVYRALNKLS-------FTDFVLKLRTEVSQEDRKQLKAI- 58

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                Q QL+       I    D+    L V  R LI R                ++E +
Sbjct: 59  -----QEQLLAHKPAQYIIGSSDFHGLTLKVDERVLIPRPE-----------TEELVELI 102

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L+        +L++  G+G  +L LA  R   ++ A ++++ ++  A  N  +  + N+ 
Sbjct: 103 LSENPESSVSVLDIGTGSGAIALALANNRPDWQITASDLSEDALALATENAQSCGL-NLT 161

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPH 317
            VR    +  Q                   +F  I  +PP       D+  + ++ + PH
Sbjct: 162 FVRSDCLDAIQ------------------EKFDIIVSNPPYISEEDKDEVGLNVLTSEPH 203

Query: 318 IL 319
           + 
Sbjct: 204 MA 205


>gi|229495928|ref|ZP_04389654.1| ribosomal protein L11 methyltransferase [Porphyromonas endodontalis
           ATCC 35406]
 gi|229317241|gb|EEN83148.1| ribosomal protein L11 methyltransferase [Porphyromonas endodontalis
           ATCC 35406]
          Length = 306

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA 252
              ML  +L     +    +L++ CG G   +  A    +RV  V+I   +VE AR+N  
Sbjct: 149 TQMMLSLLLEEHSALAHARVLDVGCGTGVLGIAAALLGAERVSFVDIDATAVENARHNAE 208

Query: 253 ANHVN-NVKIVRMSSKEFT 270
            N +           +E  
Sbjct: 209 LNGLRVPCSFYEGILEELA 227


>gi|220907021|ref|YP_002482332.1| Mg-protoporphyrin IX methyl transferase [Cyanothece sp. PCC 7425]
 gi|219863632|gb|ACL43971.1| magnesium protoporphyrin O-methyltransferase [Cyanothece sp. PCC
           7425]
          Length = 253

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA--ANH 255
           +LEW+ A     +    +  CG G+ S+ LA    RV A ++++  VE AR         
Sbjct: 74  VLEWLRADGNLAERTFCDAGCGVGSLSIPLAAMGGRVYASDLSEKMVEEARQRAKTVLEQ 133

Query: 256 VNNVKIVRMSSKEF 269
             N +      +  
Sbjct: 134 SENPQFGVQDLEHL 147


>gi|187479535|ref|YP_787560.1| methyltransferase [Bordetella avium 197N]
 gi|115424122|emb|CAJ50675.1| putative methyltransferase [Bordetella avium 197N]
          Length = 254

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M  W  A        +L+L CG G+ S  +A     V+A ++++  ++      A   +
Sbjct: 35  EMASWARA-----DARVLDLGCGGGHVSFHVAPRAAEVVAYDLSQSMLDVVAAEAARRGL 89

Query: 257 NNVKIVRMSSKEFTQA 272
           NN++  +  ++    A
Sbjct: 90  NNLRTCQGKAERLPFA 105


>gi|332654575|ref|ZP_08420318.1| putative methyltransferase [Ruminococcaceae bacterium D16]
 gi|332516539|gb|EGJ46145.1| putative methyltransferase [Ruminococcaceae bacterium D16]
          Length = 409

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 16/119 (13%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIV 262
           A       +L+ +   G+F+L  A    + V AV++++ +V+ AR N   N +   +  +
Sbjct: 231 AKLARGKRVLDCFTHTGSFALNAALGGAEHVTAVDVSQAAVDLARDNAVRNGLEGRMDFL 290

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHILY 320
                +    +              H   +  I +DPP       T    ++ Y  I Y
Sbjct: 291 CADVFDLLPTLE-------------HQPDYDFIILDPPAFTKSRKTARNAMRGYKEINY 336


>gi|304373117|ref|YP_003856326.1| Protein-(Glutamine-N5) methyltransferase, release factor-specific
           [Mycoplasma hyorhinis HUB-1]
 gi|304309308|gb|ADM21788.1| Protein-(Glutamine-N5) methyltransferase, release factor-specific
           [Mycoplasma hyorhinis HUB-1]
          Length = 243

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 21/108 (19%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIA 252
              ++        G Q  +L+L CG+G   L +A+     +V+  +I   ++  ++ N  
Sbjct: 69  TEELILQAYKYING-QSTVLDLGCGSGFIGLAIAKNTKAKQVVLSDIDSQAILQSKINAK 127

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N +  VKI++    +                 ++  Y+F  I  +PP
Sbjct: 128 LNKLK-VKIIQSDLFD-----------------NLKKYKFDVIICNPP 157


>gi|239625473|ref|ZP_04668504.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519703|gb|EEQ59569.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 410

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 17/114 (14%)

Query: 209 IQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMS 265
           +   +L+ +   G+F+L   LA     VL V+ ++ +V+ A  N   + + + V      
Sbjct: 232 LPDKVLDCFTHTGSFALNAGLAGS-KDVLGVDASQLAVDQASENAQLSGIGDRVHFECAD 290

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
             +    + +E              +F  + +DPP       ++   V+ Y  I
Sbjct: 291 VFDLLPRLEQE------------GQKFDVVILDPPAFTKSRNSIKNAVKGYREI 332


>gi|218191132|gb|EEC73559.1| hypothetical protein OsI_07994 [Oryza sativa Indica Group]
          Length = 677

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSK 267
           +GD++ +++ G G FS+  A+    V A ++   SV   R N   N V++      M ++
Sbjct: 226 KGDVICDMFAGIGPFSIPAAQKGCIVYANDLNPDSVRYLRTNAQINKVDDYIFTYNMDAR 285

Query: 268 EFTQAMRR 275
            F Q +  
Sbjct: 286 VFMQNLLE 293



 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSK 267
           +GD++ +++ G G FS+  A+    V A ++   SV   R N   N V++      M ++
Sbjct: 438 KGDVICDMFAGIGPFSIPAAQKGCIVYANDLNPDSVRYLRTNAQINKVDDYIFTYNMDAR 497

Query: 268 EFTQAMRR 275
            F Q +  
Sbjct: 498 VFMQNLLE 505


>gi|217420529|ref|ZP_03452034.1| glycosyltransferase, group 1 [Burkholderia pseudomallei 576]
 gi|217395941|gb|EEC35958.1| glycosyltransferase, group 1 [Burkholderia pseudomallei 576]
          Length = 1736

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            HM  +++A        +L++ CG G  S  LAR    V+ V+I++ ++  AR       
Sbjct: 43  EHMHRYLVARKLAKGLRVLDIACGEGYGSFALAREAATVVGVDISEDAIRHARAEYGQR- 101

Query: 256 VNNVKIVRMSSKEF 269
             N++ V  S+   
Sbjct: 102 AANLEFVVGSAANI 115


>gi|212275358|ref|NP_001130238.1| hypothetical protein LOC100191332 [Zea mays]
 gi|194688642|gb|ACF78405.1| unknown [Zea mays]
          Length = 176

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 24/130 (18%)

Query: 198 MLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANH 255
           ML     +   I G ++ +  CG G  ++  A    + VL ++I   S+E A+ N A   
Sbjct: 1   MLYMAENSFNDITGKVVADFGCGCGTLAVASALLDAEHVLGIDIDPQSLELAQENAADLE 60

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           ++                  +  ++ +K++++      T+ ++PP    R+G D   + M
Sbjct: 61  LD-----------------IDLVWSDIKNLNLKGVHVDTVVMNPPFGTRRNGADMEFLSM 103

Query: 312 -VQAYPHILY 320
            +Q     +Y
Sbjct: 104 ALQVASQAVY 113


>gi|88192213|pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
           Methylation By Prmc
          Length = 276

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|16765116|ref|NP_460731.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|62180339|ref|YP_216756.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161613729|ref|YP_001587694.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|167993218|ref|ZP_02574313.1| protein methyltransferase HemK [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168237829|ref|ZP_02662887.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168820513|ref|ZP_02832513.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194443667|ref|YP_002041025.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194735200|ref|YP_002114805.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197265643|ref|ZP_03165717.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198245434|ref|YP_002215370.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207856718|ref|YP_002243369.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224583735|ref|YP_002637533.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|17865746|sp|P40816|HEMK_SALTY RecName: Full=Protein methyltransferase hemK; AltName:
           Full=M.StyLTHemKP; AltName:
           Full=Protein-(glutamine-N(5)) MTase hemK; AltName:
           Full=Protein-glutamine N-methyltransferase hemK
 gi|16420305|gb|AAL20690.1| putative protoporphyrinogen oxidase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62127972|gb|AAX65675.1| putative protoporphyrinogen oxidase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161363093|gb|ABX66861.1| hypothetical protein SPAB_01454 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402330|gb|ACF62552.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194710702|gb|ACF89923.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197243898|gb|EDY26518.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197289229|gb|EDY28596.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939950|gb|ACH77283.1| protein methyltransferase HemK [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205328672|gb|EDZ15436.1| protein methyltransferase HemK [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205342641|gb|EDZ29405.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|206708521|emb|CAR32842.1| HemK protein, putative protoporphyrinogen oxidase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|224468262|gb|ACN46092.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261246961|emb|CBG24778.1| HemK protein, putative protoporphyrinogen oxidase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267993723|gb|ACY88608.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301158299|emb|CBW17798.1| HemK protein, putative protoporphyrinogen oxidase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312912764|dbj|BAJ36738.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|320085724|emb|CBY95502.1| possible protoporphyrinogen oxidase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321224403|gb|EFX49466.1| protein-glutamine-N5 methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322616771|gb|EFY13679.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620419|gb|EFY17285.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322625679|gb|EFY22498.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322626129|gb|EFY22939.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322633736|gb|EFY30476.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638890|gb|EFY35583.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640873|gb|EFY37522.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322644094|gb|EFY40639.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322649165|gb|EFY45603.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655324|gb|EFY51632.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660918|gb|EFY57149.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322662785|gb|EFY58992.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322667969|gb|EFY64128.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322674269|gb|EFY70363.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322678550|gb|EFY74608.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322683209|gb|EFY79225.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686903|gb|EFY82881.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|322714813|gb|EFZ06384.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130045|gb|ADX17475.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|323195207|gb|EFZ80387.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200202|gb|EFZ85288.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323204530|gb|EFZ89534.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323207353|gb|EFZ92301.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323213948|gb|EFZ98717.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323217338|gb|EGA02057.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323228021|gb|EGA12166.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323231360|gb|EGA15473.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323235800|gb|EGA19879.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323240369|gb|EGA24412.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323245261|gb|EGA29261.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249066|gb|EGA32986.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252823|gb|EGA36659.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323254892|gb|EGA38686.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323266734|gb|EGA50220.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323268941|gb|EGA52397.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|326623116|gb|EGE29461.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|332988662|gb|AEF07645.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 277

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|254244444|ref|ZP_04937766.1| hypothetical protein PA2G_05302 [Pseudomonas aeruginosa 2192]
 gi|126197822|gb|EAZ61885.1| hypothetical protein PA2G_05302 [Pseudomonas aeruginosa 2192]
          Length = 276

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 19/108 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  LA        +L+L  G G  +L LA  R    V AV+  + +V  A  N  
Sbjct: 94  TELLVETALATLTADTATVLDLGTGTGAIALALASERPLWTVTAVDRVEEAVALAERNRQ 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              + NV++            RR   F+ L        RF+ I  +PP
Sbjct: 154 RLLLENVEV------------RRSHWFSAL-----DGRRFRMIVGNPP 184


>gi|293414489|ref|ZP_06657138.1| methyltransferase [Escherichia coli B185]
 gi|291434547|gb|EFF07520.1| methyltransferase [Escherichia coli B185]
          Length = 277

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|213648796|ref|ZP_03378849.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 179

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 59  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 118

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 119 IRNVRILQ 126


>gi|205352557|ref|YP_002226358.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205272338|emb|CAR37218.1| HemK protein, putative protoporphyrinogen oxidase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627617|gb|EGE33960.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 277

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|332702161|ref|ZP_08422249.1| Protein of unknown function methylase putative [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552310|gb|EGJ49354.1| Protein of unknown function methylase putative [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 394

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 30/264 (11%)

Query: 89  EMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQ 148
           E+   +   P  R    + DYL          L+  +L           L +AL A    
Sbjct: 90  ELREKLFDTPHYRLAFGEGDYLPGLVIDRYGDLLVAQLTTAGMDSRRKALAEALRATVRN 149

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS--------FTQPNAGINVHMLE 200
            +++ + + T   L      E L ++   L     + +        F             
Sbjct: 150 ARIVFKNDSTAREL------EGLPLSVEALEGDVPDEAELAESGAKF--VTPLAGGQKTG 201

Query: 201 WVLAATKGIQ--------GDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNI 251
           W        Q        G +L+++   G   ++ A R     + ++ ++ +++ A  N 
Sbjct: 202 WFYDMRPNRQRLAGLATGGRVLDVFSYVGGLGVLAAVRGASEAICLDSSETALKYAARNA 261

Query: 252 AANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDA 307
             N V + V+  R  + +    +    E      +D  ++   +          + ++  
Sbjct: 262 ELNGVADKVRTERGDAFDVLARLHDAGERFDAVSVDPPAFIKRKKDHPQGMQAYTNINRL 321

Query: 308 TVGMVQAYPHILYISCNPDSLCRD 331
            + +V+    +L  SC+   L RD
Sbjct: 322 AMRLVRDGGWLLSASCSQH-LSRD 344


>gi|294010664|ref|YP_003544124.1| putative SAM-dependent methyltransferase [Sphingobium japonicum
           UT26S]
 gi|292673994|dbj|BAI95512.1| putative SAM-dependent methyltransferase [Sphingobium japonicum
           UT26S]
          Length = 289

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 22/189 (11%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R +    +      +D   A    I         +   +R    E   +  + + ++   
Sbjct: 32  RFIRPEPQAMWAPAQDDWQADGEFIPGSDEEGGGRWFYERPVPAEGWPLHWQEVTFQASC 91

Query: 185 N-----SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
                  F    A +   M   +       Q  ++ L+   G  +L +A    +++ V+ 
Sbjct: 92  TPFRHLGFFPDMAPVWDWMRGRIADKD---QAQVMNLFGYTGVGTLAMAAAGAQMVHVDA 148

Query: 240 AKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +K SV  AR N A + + +  V+ +   + +F     R               R+  I +
Sbjct: 149 SKKSVAQARANAALSGLEDRPVRWIVDDAAKFVAREVR------------RGRRYDGILL 196

Query: 298 DPPRSGLDD 306
           DPP+ G   
Sbjct: 197 DPPKYGRGP 205


>gi|227550698|ref|ZP_03980747.1| methyltransferase [Enterococcus faecium TX1330]
 gi|293379424|ref|ZP_06625568.1| methyltransferase small domain protein [Enterococcus faecium PC4.1]
 gi|227180159|gb|EEI61131.1| methyltransferase [Enterococcus faecium TX1330]
 gi|292641947|gb|EFF60113.1| methyltransferase small domain protein [Enterococcus faecium PC4.1]
          Length = 210

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 19/125 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
             +++         +G +L++ CG G   L LA    R V  V+I + +V  A+ N   N
Sbjct: 56  RVLIDAFDWEELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVSLAQGNAKRN 115

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
            +  V I + +  E                  +H   +  I  +PP R+G       +  
Sbjct: 116 QIEQVDIHQSNIYEV-----------------LHEETYAAIVSNPPIRAGKKVVHEILTG 158

Query: 314 AYPHI 318
           AYP +
Sbjct: 159 AYPRL 163


>gi|126665162|ref|ZP_01736145.1| Modification methylase HemK [Marinobacter sp. ELB17]
 gi|126630532|gb|EBA01147.1| Modification methylase HemK [Marinobacter sp. ELB17]
          Length = 314

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/220 (20%), Positives = 83/220 (37%), Gaps = 22/220 (10%)

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTL---IYHRLLDDAWRECAIRLRDALHARKYQ 148
           AT+R + LLRA   +I   + Q D  ++ +    + R    A+ E  + L  A    +  
Sbjct: 15  ATLRCDDLLRAAASRIGSDSPQLDAELLLVQVTGWSRTRFRAFPEQHVSLVQAAAFEQLV 74

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
            +         +   +++    L V+  TLI R                ++E  L     
Sbjct: 75  DKRAAGEPVAYVLGWQEFWSLPLQVSAATLIPRPD-----------TECVVEQALTLDLP 123

Query: 209 IQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHV-----NNVKI 261
            Q  +L+L  G G  +L LA  R    + A +    +V  A+ N AA ++      +   
Sbjct: 124 AQARVLDLGTGTGAIALALASERPDWDITASDFVDAAVALAQSNAAALNLPIQVVKSHWF 183

Query: 262 VRMSSKEFTQAMRREREFNR-LKDIDIHSYRFKTIFVDPP 300
            ++++  F Q +    +  R L+        F  I  +PP
Sbjct: 184 DQLTAVCFDQRLDESGDPRRDLRGDLNRDQGFDLIVSNPP 223


>gi|37522659|ref|NP_926036.1| gamma-tocopherol methyltransferase [Gloeobacter violaceus PCC 7421]
 gi|35213660|dbj|BAC91031.1| gamma-tocopherol methyltransferase [Gloeobacter violaceus PCC 7421]
          Length = 281

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 18/151 (11%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAAN 254
           V +L+W           ++++ CG G  SL LA  F  RV  + ++    + A      +
Sbjct: 53  VRLLDWA---GIDRAESIVDVGCGIGGSSLFLAERFGARVEGITLSPVQCKRAAERAREH 109

Query: 255 HVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           H++         +     A  R      L+  +  + + + +               +++
Sbjct: 110 HLDGRAHFQVADAHRMPFADGRFDLVWSLESGEHMADKAQFL----------RECHRVLR 159

Query: 314 AYPHILYI--SCNPDSL-CRDLSILSTTHTI 341
                +++   C   +L  RD   L   + I
Sbjct: 160 PGGRFVFVTWCCRHGALDARDQKWLGAIYRI 190


>gi|15677854|ref|NP_275022.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           MC58]
 gi|11256790|pir||H81015 3-demethylubiquinone-9 3-methyltransferase NMB2030 [imported] -
           Neisseria meningitidis (strain MC58 serogroup B)
 gi|7227291|gb|AAF42352.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           MC58]
 gi|316983907|gb|EFV62886.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis H44/76]
 gi|325131272|gb|EGC53983.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis M6190]
 gi|325137300|gb|EGC59888.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis ES14902]
 gi|325141426|gb|EGC63904.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis 961-5945]
 gi|325199120|gb|ADY94576.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis G2136]
          Length = 242

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 38  HDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 98  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 143


>gi|16129175|ref|NP_415730.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli str. K-12 substr. MG1655]
 gi|24112611|ref|NP_707121.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella flexneri 2a str. 301]
 gi|30062736|ref|NP_836907.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella flexneri 2a str. 2457T]
 gi|89108057|ref|AP_001837.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli str. K-12 substr. W3110]
 gi|157160717|ref|YP_001458035.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli HS]
 gi|170020421|ref|YP_001725375.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli ATCC 8739]
 gi|170080840|ref|YP_001730160.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|187731012|ref|YP_001879995.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella boydii CDC 3083-94]
 gi|188492205|ref|ZP_02999475.1| protein methyltransferase HemK [Escherichia coli 53638]
 gi|218553766|ref|YP_002386679.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli IAI1]
 gi|238900443|ref|YP_002926239.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli BW2952]
 gi|256018538|ref|ZP_05432403.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella sp. D9]
 gi|256023111|ref|ZP_05436976.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia sp. 4_1_40B]
 gi|260854873|ref|YP_003228764.1| N5-glutamine methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260867617|ref|YP_003234019.1| N5-glutamine methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300816903|ref|ZP_07097123.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           107-1]
 gi|300951679|ref|ZP_07165503.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           116-1]
 gi|300955612|ref|ZP_07167969.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           175-1]
 gi|301029485|ref|ZP_07192567.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           196-1]
 gi|312971399|ref|ZP_07785574.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli 1827-70]
 gi|331652250|ref|ZP_08353269.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli M718]
 gi|331667596|ref|ZP_08368460.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli TA271]
 gi|332279598|ref|ZP_08392011.1| protoporphyrinogen oxidase hemK [Shigella sp. D9]
 gi|81170789|sp|P0ACC1|HEMK_ECOLI RecName: Full=Protein methyltransferase hemK; AltName:
           Full=M.EcoKHemKP; AltName: Full=Protein-(glutamine-N(5))
           MTase hemK; AltName: Full=Protein-glutamine
           N-methyltransferase hemK
 gi|81170790|sp|P0ACC2|HEMK_SHIFL RecName: Full=Protein methyltransferase hemK; AltName:
           Full=Protein-(glutamine-N(5)) MTase hemK; AltName:
           Full=Protein-glutamine N-methyltransferase hemK
 gi|50513699|pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
           (N5)-Glutamine Methyltransferase (Hemk)
 gi|968931|gb|AAC43438.1| possible protoporphyrinogen oxidase [Escherichia coli]
 gi|1651602|dbj|BAA36070.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli str. K12 substr. W3110]
 gi|1787463|gb|AAC74296.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli str. K-12 substr. MG1655]
 gi|18376673|dbj|BAB84109.1| protein-(glutamine-N5) methyl transferase [Escherichia coli]
 gi|24051516|gb|AAN42828.1| possible protoporphyrinogen oxidase [Shigella flexneri 2a str. 301]
 gi|30040984|gb|AAP16714.1| possible protoporphyrinogen oxidase [Shigella flexneri 2a str.
           2457T]
 gi|157066397|gb|ABV05652.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli HS]
 gi|169755349|gb|ACA78048.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli ATCC 8739]
 gi|169888675|gb|ACB02382.1| release factors RF-1 and RF-2 N5-glutamine methyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|187428004|gb|ACD07278.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella boydii CDC 3083-94]
 gi|188487404|gb|EDU62507.1| protein methyltransferase HemK [Escherichia coli 53638]
 gi|218360534|emb|CAQ98092.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli IAI1]
 gi|238861844|gb|ACR63842.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli BW2952]
 gi|257753522|dbj|BAI25024.1| N5-glutamine methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257763973|dbj|BAI35468.1| N5-glutamine methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|260449653|gb|ACX40075.1| modification methylase, HemK family [Escherichia coli DH1]
 gi|281600636|gb|ADA73620.1| Protein methyltransferase hemK [Shigella flexneri 2002017]
 gi|299877628|gb|EFI85839.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           196-1]
 gi|300317505|gb|EFJ67289.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           175-1]
 gi|300449125|gb|EFK12745.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           116-1]
 gi|300530677|gb|EFK51739.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           107-1]
 gi|310335996|gb|EFQ01196.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli 1827-70]
 gi|313649401|gb|EFS13832.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella flexneri 2a str. 2457T]
 gi|315135848|dbj|BAJ43007.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli DH1]
 gi|320174902|gb|EFW50021.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella dysenteriae CDC 74-1112]
 gi|320185615|gb|EFW60377.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella flexneri CDC 796-83]
 gi|323153189|gb|EFZ39451.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli EPECa14]
 gi|323179273|gb|EFZ64843.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli 1180]
 gi|323942491|gb|EGB38659.1| protein-(glutamine-N5) methyltransferase [Escherichia coli E482]
 gi|323947505|gb|EGB43509.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H120]
 gi|324117240|gb|EGC11147.1| protein-(glutamine-N5) methyltransferase [Escherichia coli E1167]
 gi|331050528|gb|EGI22586.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli M718]
 gi|331065181|gb|EGI37076.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli TA271]
 gi|332101950|gb|EGJ05296.1| protoporphyrinogen oxidase hemK [Shigella sp. D9]
 gi|332757865|gb|EGJ88192.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella flexneri 4343-70]
 gi|332759447|gb|EGJ89755.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella flexneri 2747-71]
 gi|332760306|gb|EGJ90596.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella flexneri K-671]
 gi|332767446|gb|EGJ97640.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella flexneri 2930-71]
 gi|333005051|gb|EGK24571.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella flexneri VA-6]
 gi|333005663|gb|EGK25181.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella flexneri K-218]
 gi|333007545|gb|EGK27023.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella flexneri K-272]
 gi|333019222|gb|EGK38509.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella flexneri K-304]
 gi|333019925|gb|EGK39197.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shigella flexneri K-227]
          Length = 277

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|257878705|ref|ZP_05658358.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,230,933]
 gi|257881346|ref|ZP_05660999.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,502]
 gi|257890564|ref|ZP_05670217.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,410]
 gi|260558265|ref|ZP_05830461.1| methyltransferase [Enterococcus faecium C68]
 gi|257812933|gb|EEV41691.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,230,933]
 gi|257817004|gb|EEV44332.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,502]
 gi|257826924|gb|EEV53550.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,410]
 gi|260075439|gb|EEW63745.1| methyltransferase [Enterococcus faecium C68]
          Length = 201

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 19/125 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
             +++         +G +L++ CG G   L LA    R V  V+I + +V  A+ N   N
Sbjct: 47  RVLIDAFDWEELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVSLAQGNAKRN 106

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
            + +V I + +  E                  +H   +  I  +PP R+G       +  
Sbjct: 107 QIEHVDIHQSNIYE-----------------AVHEETYAAIVSNPPIRAGKKVVHEILTG 149

Query: 314 AYPHI 318
           AYP +
Sbjct: 150 AYPRL 154


>gi|194100022|ref|YP_002003161.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|268593874|ref|ZP_06128041.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268683342|ref|ZP_06150204.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|193935312|gb|ACF31136.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           NCCP11945]
 gi|268547263|gb|EEZ42681.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|268623626|gb|EEZ56026.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|325208882|gb|ADZ04334.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis NZ-05/33]
          Length = 242

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 38  HDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 98  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 143


>gi|183980717|ref|YP_001849008.1| hypothetical protein MMAR_0694 [Mycobacterium marinum M]
 gi|183174043|gb|ACC39153.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 504

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
           N  ML    AA  G Q  +L+L CGNG  S  LAR    +V  ++++   +  A+   A 
Sbjct: 87  NEQMLR---AARIGPQSRVLDLGCGNGTVSAWLARQTGAQVTGIDLSAVRIANAQRLAAD 143

Query: 254 NHVNNVKIVRMSSKEFTQA 272
           N    ++ +  S+     A
Sbjct: 144 NPQLQLEFMASSASALPFA 162


>gi|204927633|ref|ZP_03218834.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204322975|gb|EDZ08171.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 277

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|167553920|ref|ZP_02347663.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168462749|ref|ZP_02696680.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195633874|gb|EDX52226.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|205321752|gb|EDZ09591.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 277

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|166154615|ref|YP_001654733.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis 434/Bu]
 gi|166155490|ref|YP_001653745.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335882|ref|ZP_07224126.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis L2tet1]
 gi|165930603|emb|CAP04100.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis 434/Bu]
 gi|165931478|emb|CAP07054.1| N6-adenine-specific DNA methylase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 275

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L L+   G  S+  A+    V  V+ +K +V+ A+ N+  N   + ++          
Sbjct: 108 RVLNLFAYTGASSIFCAQQGATVYHVDASKAAVKWAQKNVEGNAFQDKRVF--------- 158

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
               E  F+ LK        +  I +DPP  G   
Sbjct: 159 -WIIEDVFSFLKKEIRRGKTYDVILLDPPTYGRGP 192


>gi|121534357|ref|ZP_01666181.1| methyltransferase small [Thermosinus carboxydivorans Nor1]
 gi|121307127|gb|EAX48045.1| methyltransferase small [Thermosinus carboxydivorans Nor1]
          Length = 252

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 14/101 (13%)

Query: 211 GDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              ++L  G G   L+L AR   RV+ VEI   + E A+ ++  N +     V  +    
Sbjct: 48  ATAVDLGTGTGVIGLLLVARGAGRVVGVEIDAVAAERAQRSVQLNGLTKQMAVVAA---- 103

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                   +  RLK + + +  +  +  +PP   + D  + 
Sbjct: 104 --------DLRRLKGV-LPAGAWDLVVANPPYRPVGDGRIS 135


>gi|110805217|ref|YP_688737.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella flexneri 5 str. 8401]
 gi|110614765|gb|ABF03432.1| possible protoporphyrinogen oxidase [Shigella flexneri 5 str. 8401]
          Length = 277

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|157878942|ref|XP_001687302.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|321438217|emb|CBZ11969.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 390

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           +++++CG G F+L LA H     + A+E    S++  + N   N V++ +  V   ++E 
Sbjct: 233 VVDMFCGIGYFTLPLAMHGNVAAIHALEKNPDSIDFVKLNAVLNKVDHLIHPVCGDNREV 292

Query: 270 TQAMRR 275
            + +  
Sbjct: 293 GEELLG 298


>gi|303238635|ref|ZP_07325168.1| ribosomal protein L11 methyltransferase [Acetivibrio cellulolyticus
           CD2]
 gi|302593754|gb|EFL63469.1| ribosomal protein L11 methyltransferase [Acetivibrio cellulolyticus
           CD2]
          Length = 314

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAA 253
              M   +L         +++L CG G  S++ A+     V AV+I + +V+ A+ N A 
Sbjct: 160 TTQMCSILLEKYVKPGDKVIDLGCGTGILSIIAAKLGAEAVTAVDIDEVAVKVAKENCAI 219

Query: 254 NHVNN 258
           N V+ 
Sbjct: 220 NGVDG 224


>gi|297156904|gb|ADI06616.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 195

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 13/103 (12%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+LY G+G   L  L+R  + VL VE    +    R N+ A  +   ++    +++ 
Sbjct: 47  ARVLDLYGGSGAVGLEALSRGAEHVLLVESDARAARTIRANVRALGLPGAELRTGRAEQA 106

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 E            S  +  +F+DPP +  D+    ++
Sbjct: 107 IAGPAPE------------SGPYDVVFLDPPYAVADEELREIL 137


>gi|153835098|ref|ZP_01987765.1| putative methyltransferase [Vibrio harveyi HY01]
 gi|148868448|gb|EDL67556.1| putative methyltransferase [Vibrio harveyi HY01]
          Length = 199

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G       +R  D+V  +E+   + +  + N+A
Sbjct: 46  VKETLFNWLAQDVP--QAKCLDLFAGSGGLGFESASRQADQVTMIELNPQAFQQLQKNVA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           + + NN+++V   +  F Q                       +F+DPP R GL D TV +
Sbjct: 104 SLNANNIQVVNTDAISFLQQ---------------PGTPHHVVFIDPPFRKGLLDETVTL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LEQNGWLAEDAMIYI 163


>gi|262274338|ref|ZP_06052149.1| hypothetical protein VHA_001313 [Grimontia hollisae CIP 101886]
 gi|262220901|gb|EEY72215.1| hypothetical protein VHA_001313 [Grimontia hollisae CIP 101886]
          Length = 395

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 33/189 (17%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH       ++   N  KI +D       +T   +T  Y    +S     
Sbjct: 163 KEGLKERTGVLHGDMPPASVVIEENGVKISVD-------ITGGHKTGFYLDQRDS----- 210

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               V  +             +L  +C  G F L  L      V+ V++++P+++ A+ N
Sbjct: 211 REAAVKYV---------SGKRVLNCFCYTGGFGLYALKGGAAEVINVDVSQPALDIAQSN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATV 309
              N  +  K   +++ +  + +R  R+   L         F  + +DPP+         
Sbjct: 262 AEMNGYDLSKAQFVNA-DVFKLLREYRDAGEL---------FDVVIMDPPKFAESKSQLA 311

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 312 GACRGYKDI 320


>gi|289812520|ref|ZP_06543149.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 139

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 59  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 118

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 119 IRNVRILQ 126


>gi|309782947|ref|ZP_07677667.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ralstonia sp. 5_7_47FAA]
 gi|308918371|gb|EFP64048.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ralstonia sp. 5_7_47FAA]
          Length = 300

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 16/120 (13%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L   +      +L++  G+G    ++ LAR   RV A + +  ++  A  N 
Sbjct: 103 TELLVEQALDHLEECDAPAVLDMGTGSGIIAITIALARRDARVWATDASTDALAVAIDNA 162

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            A    NV+                  +  L   +     F  I  +PP     DA +  
Sbjct: 163 KALGATNVQAALGD------------WYGALAGTEAPPA-FDLIASNPPYIAATDAHLDQ 209


>gi|316933204|ref|YP_004108186.1| ribosomal L11 methyltransferase [Rhodopseudomonas palustris DX-1]
 gi|315600918|gb|ADU43453.1| ribosomal L11 methyltransferase [Rhodopseudomonas palustris DX-1]
          Length = 327

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYN 250
               + +L+ VL A  G    +L+L  G G  ++  A+     VLA +I K SV  AR N
Sbjct: 170 TRGCLTLLDLVLRA--GPPQRVLDLGTGTGVLAIAAAKALRHTVLATDIDKQSVAVAREN 227

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              N V N+     ++   +        F+
Sbjct: 228 ARLNGVGNLVQAEWATGFASPVFAAHAPFD 257


>gi|260664919|ref|ZP_05865770.1| 16S RNA methylase RsmC [Lactobacillus jensenii SJ-7A-US]
 gi|313472534|ref|ZP_07813024.1| methyltransferase domain protein [Lactobacillus jensenii 1153]
 gi|239529969|gb|EEQ68970.1| methyltransferase domain protein [Lactobacillus jensenii 1153]
 gi|260561402|gb|EEX27375.1| 16S RNA methylase RsmC [Lactobacillus jensenii SJ-7A-US]
          Length = 203

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A   + G++L++ CG G   L  A+     +V  V++ + +++ AR N   N V N  I 
Sbjct: 59  AESPVSGNILDVGCGYGPIGLFAAKKWPERQVDMVDVNERAMDLARKNAEVNGVTNANIF 118

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
             S  E                      ++  I  +PP R+G    +  + ++  H++
Sbjct: 119 ASSVYENVDK------------------QYAMILTNPPIRAGKSVVSEILAKSAEHLV 158


>gi|238855365|ref|ZP_04645677.1| methyltransferase small domain protein [Lactobacillus jensenii
           269-3]
 gi|282934595|ref|ZP_06339842.1| 16S RNA G1207 methylase RsmC [Lactobacillus jensenii 208-1]
 gi|238832026|gb|EEQ24351.1| methyltransferase small domain protein [Lactobacillus jensenii
           269-3]
 gi|281301347|gb|EFA93644.1| 16S RNA G1207 methylase RsmC [Lactobacillus jensenii 208-1]
          Length = 199

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A   + G++L++ CG G   L  A+     +V  V++ + +++ AR N   N V N  I 
Sbjct: 55  AESPVSGNILDVGCGYGPIGLFAAKKWPERQVDMVDVNERAMDLARKNAEVNGVTNANIF 114

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
             S  E                      ++  I  +PP R+G    +  + ++  H++
Sbjct: 115 ASSVYENVDK------------------QYAMILTNPPIRAGKSVVSEILAKSAEHLV 154


>gi|91200515|emb|CAJ73564.1| similar to SAM-dependent methyltransferase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 408

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 15/112 (13%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              ++L+ +C  G F +   R   R    V++ + ++E A+ N   N    +  V +   
Sbjct: 217 RDKEVLDCFCYTGGFGISAMRAGARSATGVDLDEKALETAKENARLNSAA-ISYVHIDVF 275

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQAYPHI 318
           +F + M                 +   + +DP + +G        ++ Y  I
Sbjct: 276 DFLRKMYN------------SGTQTDVVILDPAKLAGCTGEIKRAMRTYGDI 315


>gi|325104088|ref|YP_004273742.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase [Pedobacter
           saltans DSM 12145]
 gi|324972936|gb|ADY51920.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase [Pedobacter
           saltans DSM 12145]
          Length = 277

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 5/111 (4%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN---SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           D+ YV        +   Y  + +   +F   +      M+EW+L      + ++L++ CG
Sbjct: 94  DQVYVRATFHEPKQAFPYEIVIDPKMAFGTGHHQTTTLMMEWLLETEVEGK-NVLDMGCG 152

Query: 220 NGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
                ++ ++     V A++       +A+ N   N +NNV +   S +  
Sbjct: 153 TAILGILASKQGAKAVDAIDYDDVCYLSAKENAELNDINNVSVFCGSKEAI 203


>gi|21228051|ref|NP_633973.1| methyltransferase [Methanosarcina mazei Go1]
 gi|20906485|gb|AAM31645.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 266

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 195 NVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYN 250
               LE +L           +LE  CG G  +++LA++     + +++I+  S+E AR N
Sbjct: 19  QAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAREN 78

Query: 251 IAANHVNNVKIVRMS 265
              N + NVK ++ +
Sbjct: 79  TEKNGIKNVKFLQAN 93


>gi|291299303|ref|YP_003510581.1| methyltransferase small [Stackebrandtia nassauensis DSM 44728]
 gi|290568523|gb|ADD41488.1| methyltransferase small [Stackebrandtia nassauensis DSM 44728]
          Length = 378

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 19/104 (18%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
             ++ V AA       + ++  G G  + +LA+   RV+A +IA  +VE A  N+    +
Sbjct: 187 EYVDLVAAAPLPEGATVFDIGTGTGVLAALLAKRGARVVATDIAPRAVECAADNMTRLGL 246

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +          E  +A                  R   +  +PP
Sbjct: 247 D-------DRVEVVEADL------------FPPGRADVVLCNPP 271


>gi|14591212|ref|NP_143288.1| hypothetical protein PH1416 [Pyrococcus horikoshii OT3]
 gi|3257839|dbj|BAA30522.1| 330aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 330

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E +       +G+ + +++ G G FS++LA+    V A +I   +++    NI  N V N
Sbjct: 172 ERMRVFKMAREGEIVFDMFAGVGPFSILLAKKARMVFACDINPWAIKYLEENIKLNKVKN 231

Query: 259 VKIVRMSSKEF 269
           +  +     + 
Sbjct: 232 IIPILSDVTKV 242


>gi|332193122|gb|AEE31243.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 221

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ + G G  ++  A+    V+A++I    +  A  N     V N +  V     +   
Sbjct: 65  VIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVYGVANRIDFVTGDFMQLAP 124

Query: 272 AMRREREFNRLKDID-----IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +++ +  F            + SY+   +    PR G        +   P+I+
Sbjct: 125 SLKGDVLFLSPPWGGPTYSKVESYKLDMLL---PRDG-YSLFQTALSITPNII 173


>gi|323261019|gb|EGA44614.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
          Length = 292

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|297180645|gb|ADI16855.1| methylase of polypeptide chain release factors [uncultured alpha
           proteobacterium HF0010_13E22]
          Length = 296

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 19/106 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANH 255
           +   + A   G    +L+L CG G   L     R       V+IA  +VEAA  N   N 
Sbjct: 106 VAAALAATDPGKPCRMLDLGCGTGALLLACLSERPDATGTGVDIAGEAVEAATRNAGKNG 165

Query: 256 V-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +      V                     D D+    +  I  +PP
Sbjct: 166 LSARADFVIGD----------------FSDPDVAPGIYDLILCNPP 195


>gi|238478691|ref|NP_001154386.1| unknown protein [Arabidopsis thaliana]
          Length = 239

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ + G G  ++  A+    V+A++I    +  A  N     V N +  V     +   
Sbjct: 83  VIDCFSGVGGNTIQFAKVCSSVIAIDIDPMKIALAMNNAKVYGVANRIDFVTGDFMQLAP 142

Query: 272 AMRREREFNRLKDID-----IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +++ +  F            + SY+   +    PR G        +   P+I+
Sbjct: 143 SLKGDVLFLSPPWGGPTYSKVESYKLDMLL---PRDG-YSLFQTALSITPNII 191


>gi|222623203|gb|EEE57335.1| hypothetical protein OsJ_07451 [Oryza sativa Japonica Group]
          Length = 494

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSK 267
           +GD++ +++ G G FS+  A+    V A ++   SV   R N   N V++      M ++
Sbjct: 226 KGDVICDMFAGIGPFSIPAAQKGCIVYANDLNPDSVRYLRTNAQINKVDDYIFTYNMDAR 285

Query: 268 EFTQAMRR 275
            F Q +  
Sbjct: 286 VFMQNLLE 293


>gi|114046517|ref|YP_737067.1| SAM-dependent methyltransferase [Shewanella sp. MR-7]
 gi|122944876|sp|Q0HXZ5|RLMI_SHESR RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|113887959|gb|ABI42010.1| SAM-dependent methyltransferase [Shewanella sp. MR-7]
          Length = 396

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 26/157 (16%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +AA       +L  +C  G F L  A+     +  V+++  +++ AR N+  N + N 
Sbjct: 212 RAMAARFVKGKSVLNCFCYTGTFGLYAAKAGAASIENVDVSALALDTARLNMRVNGL-ND 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             V  +  +  + +R+ R+             F  I +DPP+   +     G  + Y  I
Sbjct: 271 DNVHYNEADVFKLLRQYRD---------EGKTFDVIVLDPPKFADNKSQLNGACRGYKDI 321

Query: 319 LYISCNPDSLCRDLSILSTT-----HTIERLALFDQF 350
             I+         L +L+        +   L   D F
Sbjct: 322 NMIA---------LQLLNPGGVLLTFSCSGLMPADLF 349


>gi|193064883|ref|ZP_03045960.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli E22]
 gi|194425825|ref|ZP_03058381.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli B171]
 gi|260843504|ref|YP_003221282.1| N5-glutamine methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|192927568|gb|EDV82185.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli E22]
 gi|194415880|gb|EDX32146.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli B171]
 gi|257758651|dbj|BAI30148.1| N5-glutamine methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|323162263|gb|EFZ48121.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli E128010]
          Length = 277

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|325133357|gb|EGC56022.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis M13399]
 gi|325143588|gb|EGC65908.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis M01-240013]
 gi|325206935|gb|ADZ02388.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis M04-240196]
          Length = 242

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 38  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 98  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 143


>gi|325133243|gb|EGC55909.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis M13399]
 gi|325139388|gb|EGC61928.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis CU385]
 gi|325201113|gb|ADY96568.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis H44/76]
          Length = 273

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
                G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|291302742|ref|YP_003514020.1| methyltransferase type 12 [Stackebrandtia nassauensis DSM 44728]
 gi|290571962|gb|ADD44927.1| Methyltransferase type 12 [Stackebrandtia nassauensis DSM 44728]
          Length = 214

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N  +++ V        G +L+L CG G  ++ LA    RV +V+I+  ++     N  A 
Sbjct: 33  NPVLVDTVADVE---PGTVLDLGCGEGGDAVWLASKGWRVTSVDISGTAIARTLDNAKAA 89

Query: 255 HVNNVKIVRMSSKEFTQAMR 274
            V +   VR    +  +   
Sbjct: 90  GVGD--RVRGERHDLAETFP 107


>gi|322802317|gb|EFZ22713.1| hypothetical protein SINV_12301 [Solenopsis invicta]
          Length = 1030

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
             +++ +CG G+ S+  A   +RV+A++I    ++ AR+N     V++ ++ +     + 
Sbjct: 873 DTIIDAFCGAGSNSIQFAFTCERVIAIDIDPNKIKIARHNAGIYGVDDRIEFITGDFLQL 932

Query: 270 TQAMRREREF--NRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
              +  +  F        D I    F    + PP  G         +   H+ Y
Sbjct: 933 APQLVADVVFLSPPWGGPDYIKRRVFDLESIIPP-IGGRSVFKAARRITQHVAY 985


>gi|148560549|ref|YP_001258184.1| putative SAM dependent methyltransferase [Brucella ovis ATCC 25840]
 gi|148371806|gb|ABQ61785.1| putative SAM dependent methyltransferase [Brucella ovis ATCC 25840]
          Length = 381

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 67/186 (36%), Gaps = 27/186 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 159 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRERE 278
           G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q  +R   
Sbjct: 217 GVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREKRRGS 276

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILS 336
           F            +  I +DPP  G         + +  P ++  +C      + L+++ 
Sbjct: 277 F------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAVIL 323

Query: 337 TTHTIE 342
           T ++I 
Sbjct: 324 TAYSIR 329


>gi|121635687|ref|YP_975932.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           FAM18]
 gi|120867393|emb|CAM11165.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           FAM18]
          Length = 249

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 45  HDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 104

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 105 AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 150


>gi|39936576|ref|NP_948852.1| ribosomal L11 methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|39650432|emb|CAE28955.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 311

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYN 250
               + +L+ VL A  G    +L+L  G G  ++  A+     VLA +I K SV  AR N
Sbjct: 154 TRGCLTLLDLVLRA--GPPQRVLDLGTGTGVLAIAAAKALRHTVLATDIDKQSVAVAREN 211

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              N V N+     ++   +        F+
Sbjct: 212 ARLNGVGNLVQAEWATGFASPVFAAHAPFD 241


>gi|113969317|ref|YP_733110.1| SAM-dependent methyltransferase [Shewanella sp. MR-4]
 gi|123130678|sp|Q0HLL4|RLMI_SHESM RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|113884001|gb|ABI38053.1| SAM-dependent methyltransferase [Shewanella sp. MR-4]
          Length = 396

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 26/157 (16%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +AA       +L  +C  G F L  A+     +  V+++  +++ AR N+  N + N 
Sbjct: 212 RAMAARFVKGKSVLNCFCYTGTFGLYAAKAGAASIENVDVSALALDTARLNMRVNGL-ND 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             V  +  +  + +R+ R+             F  I +DPP+   +     G  + Y  I
Sbjct: 271 DNVHYNEADVFKLLRQYRD---------EGKTFDVIVLDPPKFADNKSQLNGACRGYKDI 321

Query: 319 LYISCNPDSLCRDLSILSTT-----HTIERLALFDQF 350
             I+         L +L+        +   L   D F
Sbjct: 322 NMIA---------LQLLNPGGVLLTFSCSGLMPADLF 349


>gi|325129341|gb|EGC52176.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis OX99.30304]
 gi|325135425|gb|EGC58045.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis M0579]
 gi|325201332|gb|ADY96786.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis M01-240149]
          Length = 242

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 38  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 98  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 143


>gi|257893152|ref|ZP_05672805.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,408]
 gi|257829531|gb|EEV56138.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,408]
          Length = 201

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 19/125 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
             +++         +G +L++ CG G   L LA    R V  V+I + +V  A+ N   N
Sbjct: 47  RVLIDAFDWKELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVSLAQGNAKRN 106

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
            +  V I + +  E                  +H   +  I  +PP R+G       +  
Sbjct: 107 QIEQVDIHQSNIYEV-----------------LHEETYAAIVSNPPIRAGKKVVHEILTG 149

Query: 314 AYPHI 318
           AYP +
Sbjct: 150 AYPRL 154


>gi|224824643|ref|ZP_03697750.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lutiella nitroferrum 2002]
 gi|224603136|gb|EEG09312.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lutiella nitroferrum 2002]
          Length = 270

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 19/119 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
             H++E  LA        +++L CG+G  ++ LA      +V AV+++  ++  AR N A
Sbjct: 88  TEHLVEAALARVGRSPAQVVDLGCGSGAIAVTLALEAPHWQVSAVDVSDAALAIARQNAA 147

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                 V   + S                       +  F  I  +PP     D  +  
Sbjct: 148 RLMAP-VTFFQGS----------------WYAPLPPAAVFDLIVSNPPYIAAADRHLEQ 189


>gi|168241357|ref|ZP_02666289.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194447419|ref|YP_002045818.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194405723|gb|ACF65942.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205339433|gb|EDZ26197.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
          Length = 277

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|260062040|ref|YP_003195120.1| ribosomal protein L11 methyltransferase [Robiginitalea biformata
           HTCC2501]
 gi|88783602|gb|EAR14773.1| ribosomal protein L11 methyltransferase [Robiginitalea biformata
           HTCC2501]
          Length = 277

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHV 256
           ML ++L      +  LL++  G G  +++ AR   R VLAV+I   S E  R N A N V
Sbjct: 131 MLRYLLDMDLNGKA-LLDMGSGTGVLAILAARRGARPVLAVDIDPWSAENCRENAARNGV 189

Query: 257 NNVKIVRMSSKEF 269
             ++ V    +  
Sbjct: 190 PEIEAVLGDVRAI 202


>gi|319938249|ref|ZP_08012646.1| hypothetical protein HMPREF9488_03482 [Coprobacillus sp. 29_1]
 gi|319806542|gb|EFW03200.1| hypothetical protein HMPREF9488_03482 [Coprobacillus sp. 29_1]
          Length = 483

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGN--FSLVLARHFDRVLAVEIAKPSVEAARY 249
           + +   M++            +L+ + G G        A+    V+ +++    +E+AR 
Sbjct: 316 SYVAATMVQLAKPYMIE-DAKVLDPFVGTGTLLIERCFAKSAHFVMGIDVYGQGIESARK 374

Query: 250 NIAANHVNNVKIVRMSSKEFT 270
           N       N+  V   S  F 
Sbjct: 375 NAKLAG-QNIYFVHKDSLRFV 394


>gi|254454541|ref|ZP_05067978.1| methyltransferase, UbiE/COQ5 family [Octadecabacter antarcticus
           238]
 gi|198268947|gb|EDY93217.1| methyltransferase, UbiE/COQ5 family [Octadecabacter antarcticus
           238]
          Length = 210

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM- 264
                  +LE+ CG G+ +L +A H   +   +I+    E AR   AA  + NV+     
Sbjct: 36  YLNADDRVLEMGCGTGSTALQIAPHVREMTGTDISPVMAEIARTKAAAGGIKNVEFRVAT 95

Query: 265 --SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              + + +        FN    +      F  ++    R G
Sbjct: 96  AQDAAKLSGTFDVVLGFNLFHLVRAPEDIFDDVYAMLLRGG 136


>gi|168260000|ref|ZP_02681973.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205350947|gb|EDZ37578.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 277

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|197249709|ref|YP_002146254.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197213412|gb|ACH50809.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 277

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALAQLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|192292397|ref|YP_001993002.1| ribosomal L11 methyltransferase [Rhodopseudomonas palustris TIE-1]
 gi|192286146|gb|ACF02527.1| ribosomal L11 methyltransferase [Rhodopseudomonas palustris TIE-1]
          Length = 296

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYN 250
               + +L+ VL A  G    +L+L  G G  ++  A+     VLA +I K SV  AR N
Sbjct: 139 TRGCLTLLDLVLRA--GPPQRVLDLGTGTGVLAIAAAKALRHTVLATDIDKQSVAVAREN 196

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              N V N+     ++   +        F+
Sbjct: 197 ARLNGVGNLVQAEWATGFASPVFAAHAPFD 226


>gi|114706459|ref|ZP_01439361.1| SAM dependent methyltransferase [Fulvimarina pelagi HTCC2506]
 gi|114538320|gb|EAU41442.1| SAM dependent methyltransferase [Fulvimarina pelagi HTCC2506]
          Length = 378

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQ--PNAGINVHML---EWVLAATKGIQGDLLELYCGNGNF 223
           E   ++   L +     SF           H     E V AA + ++  LL L+   G  
Sbjct: 163 ETWPLSYERLAFHGRFTSFRHTGVFPEQAAHWAFVDETVRAAKRPVK--LLNLFGYTGLA 220

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           SLV AR    V  V+ +K ++  AR N A   +++   +R   ++  +   RE +     
Sbjct: 221 SLVAARAGAEVTHVDASKKAIGWARENQALAEMDDA-PIRWICEDAVRYCEREVK----- 274

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA--TVGMVQAYPHIL 319
                  R+  I +DPP+ G         +++  P++L
Sbjct: 275 ----RGNRYDAILLDPPKFGRGPKGEVWQILEDLPYLL 308


>gi|56413304|ref|YP_150379.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197362229|ref|YP_002141866.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56127561|gb|AAV77067.1| HemK protein, putative protoporphyrinogen oxidase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197093706|emb|CAR59178.1| HemK protein, putative protoporphyrinogen oxidase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
          Length = 277

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IQNVRILQ 165


>gi|297198629|ref|ZP_06916026.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197714625|gb|EDY58659.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 212

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E +         D+L+L CG G+ SL+ A    RV  V+ +   V+ AR         + 
Sbjct: 51  ERLRGWLPERPSDVLDLGCGTGSLSLLAAEQGHRVTGVDRSPAMVDLAR--AKLAG-RDA 107

Query: 260 KIVRMSSKE 268
             +   +  
Sbjct: 108 VFLVGDAAH 116


>gi|110598249|ref|ZP_01386525.1| magnesium protoporphyrin O-methyltransferase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340164|gb|EAT58663.1| magnesium protoporphyrin O-methyltransferase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 262

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 10/126 (7%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y D++L+    T+          Q +A +     +W+          +L+  CG G FS+
Sbjct: 61  YGDDKLSSVRNTVR---------QGHAVMMDKAFDWLQKLGLPKGATVLDAGCGTGLFSI 111

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKD 284
            LA+   +V +V+IA   V  A+       V+ N++    + +  +        F+ L  
Sbjct: 112 RLAKAGYKVKSVDIASQMVGKAKEEAIKQGVDGNIEFEVNTIESVSGTYDAVVCFDVLIH 171

Query: 285 IDIHSY 290
                +
Sbjct: 172 YPAEGF 177


>gi|304320585|ref|YP_003854228.1| hypothetical protein PB2503_05057 [Parvularcula bermudensis
           HTCC2503]
 gi|303299487|gb|ADM09086.1| hypothetical protein PB2503_05057 [Parvularcula bermudensis
           HTCC2503]
          Length = 248

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 18/101 (17%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E   AA       +L+L  G G  +   +   D+++A +++  ++  A  N     V NV
Sbjct: 49  EQSCAAYCNHGDRVLDLGTGCGVGAYFCSEKADQIVASDVSATALANAAENCRRFGVTNV 108

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +                         D    RF  I  +PP
Sbjct: 109 EFRHSDM------------------FDNIQGRFDLILANPP 131


>gi|116624370|ref|YP_826526.1| type 11 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227532|gb|ABJ86241.1| Methyltransferase type 11 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 246

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 12/126 (9%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E+ L      +  +L+L CG G  +  L++HFD VLA++I++P +  AR   A     N+
Sbjct: 47  EFFLENLPRRRRRVLDLGCGAGLLAQELSKHFDSVLAIDISEPMLAIAR---AKRSAPNI 103

Query: 260 KIVRMSS--KEF---TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +     +   EF     A+     F+ + D+     RFK +     R       + +V  
Sbjct: 104 EYRLADASTAEFEGEFDAVVSHTTFHHIADVAGTITRFKPMLARQGRF----LIIDLVDR 159

Query: 315 YPHILY 320
           +P   Y
Sbjct: 160 WPRFRY 165


>gi|317491753|ref|ZP_07950188.1| methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920187|gb|EFV41511.1| methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 280

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R   + + V+ +  +   A  N +  +
Sbjct: 98  LVEKALALLPVAACSVLDLGTGTGAIALALASERPDCQFVGVDYSADATALASRNASRLN 157

Query: 256 VNNVKIVRMS 265
           + NV  V  S
Sbjct: 158 ITNVTFVTGS 167


>gi|239825684|ref|YP_002948308.1| methyltransferase small [Geobacillus sp. WCH70]
 gi|239805977|gb|ACS23042.1| methyltransferase small [Geobacillus sp. WCH70]
          Length = 200

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 30/114 (26%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           + GD L++ CG G   L +A+ F    V  ++I K ++E A  N  ANH+ N  I     
Sbjct: 58  VDGDFLDVGCGYGPIGLSIAKAFPNRHVDMIDINKRALELANENKHANHITNASIYESDL 117

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
             F Q   +               +F  I  +PP           ++A   +++
Sbjct: 118 --FAQVGDK---------------KFAAILTNPP-----------IRAGKRVVH 143


>gi|170768219|ref|ZP_02902672.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia albertii TW07627]
 gi|170122985|gb|EDS91916.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia albertii TW07627]
          Length = 277

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 26/223 (11%)

Query: 101 RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI 160
           R     ++++T +  +  +       L DA RE      D L AR+   + +        
Sbjct: 22  RDAEILLEHVTGK-GRTWILAFGETQLTDAQREQ----LDVLLARRRVGEPVAHLTGV-- 74

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
              R++   RL V+  TLI R                ++E  LA        +L+L  G 
Sbjct: 75  ---REFWSLRLFVSSATLIPRPD-----------TECLVEQALARLPEQPCRILDLGTGT 120

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
           G  +L LA  R    + AV+    +VE A+ N     + N+ I++    ++  A+  ++ 
Sbjct: 121 GAIALALASERTDCDITAVDRMPDAVELAKRNARHLAIKNIHILQ---SDWFSALVGQQF 177

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
              + +      +   +     R     A V        I++I
Sbjct: 178 AMIVSNPPYIDEQDPHLQQGDVRFEPLSALVAADSGMADIVHI 220


>gi|47497926|dbj|BAD20131.1| putative met-10+ protein [Oryza sativa Japonica Group]
          Length = 480

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSK 267
           +GD++ +++ G G FS+  A+    V A ++   SV   R N   N V++      M ++
Sbjct: 260 KGDVICDMFAGIGPFSIPAAQKGCIVYANDLNPDSVRYLRTNAQINKVDDYIFTYNMDAR 319

Query: 268 EFTQAMRR 275
            F Q +  
Sbjct: 320 VFMQNLLE 327


>gi|17369082|sp|Q9JXI7|UBIG_NEIMB RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|254673723|emb|CBA09364.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           alpha275]
 gi|308390128|gb|ADO32448.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           alpha710]
 gi|325139352|gb|EGC61892.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis CU385]
 gi|325201077|gb|ADY96532.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis H44/76]
          Length = 238

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 34  HDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 94  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 139


>gi|297250661|ref|ZP_06864760.2| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           polysaccharea ATCC 43768]
 gi|296838367|gb|EFH22305.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           polysaccharea ATCC 43768]
          Length = 243

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 39  HDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 98

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 99  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 144


>gi|160934128|ref|ZP_02081515.1| hypothetical protein CLOLEP_02991 [Clostridium leptum DSM 753]
 gi|156866801|gb|EDO60173.1| hypothetical protein CLOLEP_02991 [Clostridium leptum DSM 753]
          Length = 316

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 24/180 (13%)

Query: 134 CAIRLRDALHARKYQIQLIGRA----NKTKICLDRDYVDERLTVAGRTLIYR--QIENSF 187
             + L    HAR  +    G A     K        Y D R  +      +     E + 
Sbjct: 67  KQLALWKQAHARYRRSSTGGGAWQILKKVPPVWKISYGDLRFQLKTMGFKHTGVFPEQA- 125

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
              N     +++             +L L+   G  +L  A+    V  V+ +K  V  A
Sbjct: 126 --VNWDFTGNLIRNA-----PKPLKVLNLFAYTGGATLACAQAGASVCHVDASKGMVAWA 178

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           R N AA+ +++ + +R    +  + ++RE+             R+  I +DPP  G    
Sbjct: 179 RENAAASGLSD-RPIRWLVDDCIKFVQREQR---------RGNRYDGIIMDPPSYGRGPG 228


>gi|218767397|ref|YP_002341909.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           Z2491]
 gi|17369073|sp|Q9JWE6|UBIG_NEIMA RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|121051405|emb|CAM07698.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           Z2491]
          Length = 238

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 34  HDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 94  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 139


>gi|194436964|ref|ZP_03069063.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli 101-1]
 gi|253773789|ref|YP_003036620.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161294|ref|YP_003044402.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli B str. REL606]
 gi|297517276|ref|ZP_06935662.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli OP50]
 gi|300920410|ref|ZP_07136844.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           115-1]
 gi|300928242|ref|ZP_07143779.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           187-1]
 gi|301648135|ref|ZP_07247888.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           146-1]
 gi|307137827|ref|ZP_07497183.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli H736]
 gi|331641742|ref|ZP_08342877.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli H736]
 gi|194423947|gb|EDX39935.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli 101-1]
 gi|242376991|emb|CAQ31714.1| protein-(glutamine-N5) methyltransferase [Escherichia coli
           BL21(DE3)]
 gi|253324833|gb|ACT29435.1| modification methylase, HemK family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973195|gb|ACT38866.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli B str. REL606]
 gi|253977409|gb|ACT43079.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|300412543|gb|EFJ95853.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           115-1]
 gi|300463711|gb|EFK27204.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           187-1]
 gi|301073721|gb|EFK88527.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           146-1]
 gi|309701511|emb|CBJ00818.1| protein methyltransferase hemk (protein-glutamine N
           methyltransferase) [Escherichia coli ETEC H10407]
 gi|315615946|gb|EFU96572.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli 3431]
 gi|323937933|gb|EGB34197.1| protein-(glutamine-N5) methyltransferase [Escherichia coli E1520]
 gi|323962790|gb|EGB58368.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H489]
 gi|323973390|gb|EGB68577.1| protein-(glutamine-N5) methyltransferase [Escherichia coli TA007]
 gi|331038540|gb|EGI10760.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli H736]
 gi|332342794|gb|AEE56128.1| protein-(glutamine-N5) methyltransferase HemK [Escherichia coli
           UMNK88]
          Length = 277

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAVALAQRNAQHLA 157

Query: 256 VNNVKIVRMS 265
           + N++I++  
Sbjct: 158 IKNIRILQSD 167


>gi|69247085|ref|ZP_00604217.1| Methyltransferase small [Enterococcus faecium DO]
 gi|258615232|ref|ZP_05713002.1| hypothetical protein EfaeD_05923 [Enterococcus faecium DO]
 gi|293562924|ref|ZP_06677391.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1162]
 gi|293567952|ref|ZP_06679293.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1071]
 gi|294623795|ref|ZP_06702623.1| 16S RNA methylase [Enterococcus faecium U0317]
 gi|314937587|ref|ZP_07844913.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133a04]
 gi|314942914|ref|ZP_07849727.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133C]
 gi|314947950|ref|ZP_07851354.1| methyltransferase small domain protein [Enterococcus faecium
           TX0082]
 gi|314950866|ref|ZP_07853935.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133A]
 gi|314991485|ref|ZP_07856962.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133B]
 gi|314994995|ref|ZP_07860115.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194969|gb|EAN09436.1| Methyltransferase small [Enterococcus faecium DO]
 gi|291589537|gb|EFF21344.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1071]
 gi|291596749|gb|EFF27972.1| 16S RNA methylase [Enterococcus faecium U0317]
 gi|291605050|gb|EFF34517.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1162]
 gi|313590721|gb|EFR69566.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133a01]
 gi|313593965|gb|EFR72810.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133B]
 gi|313596875|gb|EFR75720.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133A]
 gi|313598386|gb|EFR77231.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133C]
 gi|313642964|gb|EFS07544.1| methyltransferase small domain protein [Enterococcus faecium
           TX0133a04]
 gi|313645548|gb|EFS10128.1| methyltransferase small domain protein [Enterococcus faecium
           TX0082]
          Length = 210

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 19/125 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
             +++         +G +L++ CG G   L LA    R V  V+I + +V  A+ N   N
Sbjct: 56  RVLIDAFDWEELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVSLAQGNAKRN 115

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
            + +V I + +  E                  +H   +  I  +PP R+G       +  
Sbjct: 116 QIEHVDIHQSNIYE-----------------AVHEETYAAIVSNPPIRAGKKVVHEILTG 158

Query: 314 AYPHI 318
           AYP +
Sbjct: 159 AYPRL 163


>gi|319778151|ref|YP_004134581.1| methyltransferase small [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171870|gb|ADV15407.1| methyltransferase small [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 241

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 20/134 (14%)

Query: 192 AGINVHMLEW---VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEA 246
                 +L      +   +     ++++ CG+GN +L +A      RV  V++   +V  
Sbjct: 33  PRQETELLGQRALAILGDRAPGPMVIDMCCGSGNLALAIAAEVPSARVWGVDVTDSTVAL 92

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR---SG 303
           AR N     + +   +R           +   F  L+   +       I  +PP    + 
Sbjct: 93  ARSNAERLALQDRVTIR-----------KGDLFGALEGDGLIGA-ADMIVCNPPYISTAR 140

Query: 304 LDDATVGMVQAYPH 317
           L+  +  +++  P 
Sbjct: 141 LEGESAHLLEGEPR 154


>gi|307213126|gb|EFN88648.1| Trimethylguanosine synthase-like protein [Harpegnathos saltator]
          Length = 978

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 62/174 (35%), Gaps = 14/174 (8%)

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
            +++ IV  +    + +        L +    ++ + +        ++  + D    R  
Sbjct: 715 DNEEIIVHELTELDVSEDNESNEEELWERRRCKRLRTEDDTAEPPQEV--EDDPTLVRYW 772

Query: 173 VAGRTLIYRQIEN------SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           +    L ++  E       S+           +             +++ +CG G  ++ 
Sbjct: 773 LNRYELFHKYDEGIQLDKESWYSVTPERIAKQIARRCKCNI-----IIDAFCGAGGNTIQ 827

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF 279
            A   ++V+A++I    +E A++N     V+N ++ +  +  E    +  +  F
Sbjct: 828 FALTCNKVIAIDIDPIKIELAKHNAKIYGVDNKIEFIVGNFLELAPKLEADVVF 881


>gi|239998024|ref|ZP_04717948.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           35/02]
 gi|240013207|ref|ZP_04720120.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           DGI18]
 gi|240120278|ref|ZP_04733240.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           PID24-1]
 gi|240124769|ref|ZP_04737655.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254670373|emb|CBA05857.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           alpha153]
 gi|325127308|gb|EGC50243.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis N1568]
          Length = 238

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 34  HDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 94  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 139


>gi|118468119|ref|YP_886428.1| methyltransferase type 12 [Mycobacterium smegmatis str. MC2 155]
 gi|118169406|gb|ABK70302.1| methyltransferase type 12 [Mycobacterium smegmatis str. MC2 155]
          Length = 211

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L     I+  +L++ CG G  +++L R    VL ++ +  ++E AR N     V+  +  
Sbjct: 33  LERAGLIRSRVLDVGCGAGEHTILLTRLGYDVLGIDFSPQAIEMARENARGRGVD-ARFA 91

Query: 263 RMSS 266
              +
Sbjct: 92  VGDA 95


>gi|75048562|sp|Q95KJ2|TRMT5_MACFA RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; AltName:
           Full=M1G-methyltransferase; AltName: Full=tRNA [GM37]
           methyltransferase; AltName: Full=tRNA methyltransferase
           5
 gi|13874473|dbj|BAB46864.1| hypothetical protein [Macaca fascicularis]
          Length = 509

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 97/271 (35%), Gaps = 20/271 (7%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + +F   +  K  + +   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 143 YKIFTHDSFEKAGLSVLEQLNVSPQISKYNLELTYENFKSEEILRAVLPEGQDVTS--GF 200

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY------VDER 170
           + V  I H  L D        +   +  +   I            + R++       ++ 
Sbjct: 201 SRVGHIAHLNLRDHQLPFKQLIGQVMIDKNPGITSAVNKINNIDNMYRNFHMEVLSGEQN 260

Query: 171 LTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVL 227
           +    R   Y   E  F++   N  ++    E          GD+L +++ G G F++ +
Sbjct: 261 MMTKVRENKYTY-EFDFSKVYWNPRLST---EHSRITELLKAGDVLFDVFAGVGPFAIPV 316

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
           A+    V A ++   S +   +N   N V+  VKI  +  K+F Q   +E     L    
Sbjct: 317 AKKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKIFNLDGKDFLQGPVKEELIQLLSLSK 376

Query: 287 IHSYRFKTIFVDPPRSG-LDDATVGMVQAYP 316
                   +   P ++     A   ++   P
Sbjct: 377 ERKPSVHIVMNLPAKAIEFLSAFKWLLDGQP 407


>gi|324994441|gb|EGC26354.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           SK678]
          Length = 276

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 48/242 (19%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           +  L  E++A       L      ++ L+        T    +L  +  +E   +L+   
Sbjct: 7   LAELEQELVAAGEEAESLSFVYRALNKLS-------FTDFVLKLRTEVSQEDRKQLKAI- 58

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                Q QL+       I    D+    L V  R LI R                ++E +
Sbjct: 59  -----QEQLLAHKPAQYIIGSSDFHGLTLKVDERVLIPRPE-----------TEELVELI 102

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L+        +L++  G+G  +L LA  R   ++ A +++  ++  A  N  +  + N+ 
Sbjct: 103 LSENPESSLSVLDIGTGSGAIALALANSRPNWQITASDLSDDALALAAENAQSCGL-NLA 161

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPH 317
            V+                     +D  S  F  I  +PP    +  D+  + ++ + PH
Sbjct: 162 FVQSDC------------------LDAISGNFDIIVSNPPYISEADKDEVGLNVLTSEPH 203

Query: 318 IL 319
           + 
Sbjct: 204 MA 205


>gi|304410322|ref|ZP_07391941.1| PUA domain containing protein [Shewanella baltica OS183]
 gi|307301967|ref|ZP_07581725.1| PUA domain containing protein [Shewanella baltica BA175]
 gi|304351731|gb|EFM16130.1| PUA domain containing protein [Shewanella baltica OS183]
 gi|306914005|gb|EFN44426.1| PUA domain containing protein [Shewanella baltica BA175]
          Length = 396

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV--N 257
             +AA       +L  +C  G F L  A+     +  V+++  ++  AR N+  N +  +
Sbjct: 212 RAIAARFVKDKSVLNCFCYTGTFGLYAAKAGAASIENVDVSSLALATARQNMQVNGLSDD 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP 316
           NV        +  +  R E               F  I +DPP+   + A + G  + Y 
Sbjct: 272 NVHYNEADVFKLLRLYRDE------------GKTFDVIVLDPPKFADNKAQLNGACRGYK 319

Query: 317 HILYISCNPDSLCRDLSILSTT-----HTIERLALFDQF 350
            I  I+         L +L+        +   L   D F
Sbjct: 320 DINMIA---------LQLLNPGGVLLTFSCSGLMPADLF 349


>gi|289706441|ref|ZP_06502799.1| methyltransferase small domain protein [Micrococcus luteus SK58]
 gi|289556936|gb|EFD50269.1| methyltransferase small domain protein [Micrococcus luteus SK58]
          Length = 215

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 22/116 (18%)

Query: 207 KGIQGDLLELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +G  L++  G G    +L LA     V  VE+ + S+  AR N AA   +N + +  
Sbjct: 61  PPARGAFLDVGAGWGPLALTLALASPEAEVTGVEVNERSLALARDNAAAVGASNARFLT- 119

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
                              +      RF  ++ +PP R G       + Q  P + 
Sbjct: 120 ------------------PEQVPDDARFDLVWSNPPIRIGKAALHDLLAQWLPRLA 157


>gi|254804125|ref|YP_003082346.1| heme biosynthesis protein [Neisseria meningitidis alpha14]
 gi|254667667|emb|CBA03497.1| heme biosynthesis protein [Neisseria meningitidis alpha14]
          Length = 273

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
                G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|220929833|ref|YP_002506742.1| hypothetical protein Ccel_2432 [Clostridium cellulolyticum H10]
 gi|220000161|gb|ACL76762.1| conserved hypothetical protein [Clostridium cellulolyticum H10]
          Length = 287

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 21/148 (14%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNG 221
           V +R T++   L +      F          V+   M+  +  A + I   +L L+   G
Sbjct: 69  VPKRWTISFNDLKFYIEPTGFKHTGLFPEQAVNWKWMINSIQKANRPI--RVLNLFAYTG 126

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREF 279
             ++  A     V  V+ AK  V  A+ N+A + + +  V+ +     +F Q     RE 
Sbjct: 127 GATVATAYAGAEVCHVDAAKGMVNWAKENLALSGLADRPVRFITDDCMKFVQ-----REI 181

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            R         ++  I +DPP  G    
Sbjct: 182 RR-------GKKYDGIIMDPPSYGRGPG 202


>gi|152984205|ref|YP_001350645.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Pseudomonas aeruginosa PA7]
 gi|150959363|gb|ABR81388.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Pseudomonas aeruginosa PA7]
          Length = 276

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  LA        +L+L  G G  +L LA  R    V AV+  + +V  A  N  
Sbjct: 94  TELLVETALATLAADSATVLDLGTGTGAIALALASERPLWTVTAVDRVEEAVALAERNRQ 153

Query: 253 ANHVNNVKIVR 263
              + NV++  
Sbjct: 154 RLLLENVEVCH 164


>gi|88603266|ref|YP_503444.1| methyltransferase [Methanospirillum hungatei JF-1]
 gi|88188728|gb|ABD41725.1| methyltransferase [Methanospirillum hungatei JF-1]
          Length = 283

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             V A        +L++  G G   + LA     V AVE ++  +   R NIA   + NV
Sbjct: 56  ARVSAMDIDESYRILDVGAGPGTLVIPLASIVAHVTAVEPSEGMLSCLRENIALAAITNV 115

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
            IV    +E       +++ N   D+ + SY             L +  + MV A    +
Sbjct: 116 DIVPKKWEEV----DVKQDLNPPYDVVVASYSLGF-------PDLREGILKMVAASSRYV 164

Query: 320 YI 321
           YI
Sbjct: 165 YI 166


>gi|313898061|ref|ZP_07831600.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312957089|gb|EFR38718.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 293

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 17/144 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGD---LLELYCGNGNF 223
           +  TV+   L ++     F           +  +W++   +G   +   +L L+   G  
Sbjct: 72  DSWTVSYGDLRFKVSPTGFKHTGLFPEQAANW-DWMMDTIQGSGREDLRVLNLFAYTGGA 130

Query: 224 SLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           ++  A      V+ V+ +K  V  A+ N+  +H+ N K +R    +  + + RE+   R 
Sbjct: 131 TMACASAGAAEVVHVDASKGMVNWAKENMMLSHLENHK-IRFIVDDVLKFVAREKRRGR- 188

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDD 306
                    +  I +DPP  G   
Sbjct: 189 --------TYHAIIMDPPSYGRGP 204


>gi|229128231|ref|ZP_04257212.1| Methyltransferase type 11 [Bacillus cereus BDRD-Cer4]
 gi|229145471|ref|ZP_04273855.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST24]
 gi|296503427|ref|YP_003665127.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171]
 gi|228637924|gb|EEK94370.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST24]
 gi|228655090|gb|EEL10947.1| Methyltransferase type 11 [Bacillus cereus BDRD-Cer4]
 gi|296324479|gb|ADH07407.1| SAM-dependent methyltransferase [Bacillus thuringiensis BMB171]
          Length = 261

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ ++     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKVHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  ++++   A
Sbjct: 79  AKVFIKQNGHENVSFVAGNAEDLPFA 104


>gi|297559190|ref|YP_003678164.1| methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296843638|gb|ADH65658.1| methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 193

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +++LY G+G   L  L+R     L VE  + + +  R NI    +   ++V    +  
Sbjct: 47  ARVMDLYAGSGAIGLEALSRGAAHALLVEADRRAAQVLRDNIQTLGLPGARLVADRVERV 106

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             A             D     +  +  DPP +  D    G++ 
Sbjct: 107 VGA-------------DNTGDPYDVVVADPPYAVTDAEVAGVLA 137


>gi|239617288|ref|YP_002940610.1| methyltransferase small [Kosmotoga olearia TBF 19.5.1]
 gi|239506119|gb|ACR79606.1| methyltransferase small [Kosmotoga olearia TBF 19.5.1]
          Length = 393

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 15/114 (13%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
              L+L+   G F + +A+    V+ V+ +   +E A  N A N V   +  V+M   ++
Sbjct: 220 KRALDLFSFTGGFGINMAKAGAEVVCVDKSGEDLEVAELNAALNDVKERMSFVQMDVFKY 279

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPHILYIS 322
            +++ ++ +F               + +DPP            ++    ++ +S
Sbjct: 280 LKSLEKKEQF-------------DIVVLDPPSLIKRKKELRRGIELLKELVSLS 320


>gi|194758481|ref|XP_001961490.1| GF14906 [Drosophila ananassae]
 gi|190615187|gb|EDV30711.1| GF14906 [Drosophila ananassae]
          Length = 214

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAA 253
              +++W++      Q  +L+L CGNG F + LA    +++  V+ +  +VE A+     
Sbjct: 43  QQRVIDWLVKQKIDKQARVLDLGCGNGMFLVGLANEGYEQLTGVDYSANAVELAKNIAQD 102

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV- 312
           N +N    +     + TQ       F+ + D   +            +  L  ATV  + 
Sbjct: 103 NQMN----ITYKVADLTQPQDELGAFDVVHDKGTYDAVSLCPENPKEKRSLYLATVEKLL 158

Query: 313 -QAYPHILYISCN 324
             A    +  SCN
Sbjct: 159 SSADSLFVITSCN 171


>gi|220915514|ref|YP_002490818.1| modification methylase, HemK family [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953368|gb|ACL63752.1| modification methylase, HemK family [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 286

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 21/129 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++           G  L+L  G+G   + LA  R   RV+A +++  ++  A  N  
Sbjct: 102 ETELVLEAARDALPEGGAALDLCTGSGALGVSLALERPGARVVATDLSADALAVAAENAR 161

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATVG 310
           A            + +  Q          L        RF  I  +PP    G  D    
Sbjct: 162 ALGA---------AVDLRQ--------GDLWAPLRAGERFDVIVSNPPYVPRGELDTLPR 204

Query: 311 MVQAYPHIL 319
            V+  P + 
Sbjct: 205 EVRREPRLA 213


>gi|108759552|ref|YP_633065.1| putative protein methyltransferase HemK [Myxococcus xanthus DK
           1622]
 gi|108463432|gb|ABF88617.1| putative protein methyltransferase HemK [Myxococcus xanthus DK
           1622]
          Length = 293

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 32/173 (18%)

Query: 139 RDALHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           +D L A +  I+       T+     R++ +    V  R LI R                
Sbjct: 56  KDELGAYRALIERRMAGEPTQYLTGVREFYNRPFKVDARVLIPRPE-----------TEL 104

Query: 198 MLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAAN 254
           ++E  L    K   G  L++  G+G  ++ LA  R    V+A +++  +   AR N  A 
Sbjct: 105 LVEAALRMLPKDAPGRALDVCTGSGCIAISLAAERPQATVIATDLSPDACALARENAQAL 164

Query: 255 H-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              + V +++     FT     ER              F+ +  +PP     +
Sbjct: 165 GVADRVTVLQGDL--FTPVPAGER--------------FQVVVSNPPYIASGE 201


>gi|30021008|ref|NP_832639.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579]
 gi|29896561|gb|AAP09840.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579]
          Length = 261

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ ++     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKVHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  ++++   A
Sbjct: 79  AKVFIKQNGHENVSFVAGNAEDLPFA 104


>gi|11498311|ref|NP_069538.1| hypothetical protein AF0704 [Archaeoglobus fulgidus DSM 4304]
 gi|2649912|gb|AAB90537.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 273

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN-V 259
           +A   G    +L ++ G G + +V+A+      V+ VE+   +VE  R N+  N V   V
Sbjct: 114 IARLVGEGERVLVMFAGVGPYPIVIAKLARPREVVGVELNPHAVEYFRQNVRLNKVEGVV 173

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           K++    +E    +  + +   +      +  F  +     R G
Sbjct: 174 KVIEGDVEEVVPQLSGQFDRVVMPAP-YSAENFIHLLRGKVRRG 216


>gi|16760668|ref|NP_456285.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29141573|ref|NP_804915.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213051785|ref|ZP_03344663.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213419807|ref|ZP_03352873.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
 gi|213426496|ref|ZP_03359246.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213581390|ref|ZP_03363216.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213859592|ref|ZP_03385296.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|289827377|ref|ZP_06545997.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25513362|pir||AI0719 HemK protein, probable protoporphyrinogen oxidase hemK [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502964|emb|CAD02130.1| HemK protein, putative protoporphyrinogen oxidase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29137200|gb|AAO68764.1| HemK protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 277

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|323351594|ref|ZP_08087248.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           VMC66]
 gi|322122080|gb|EFX93806.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           VMC66]
          Length = 276

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 85/240 (35%), Gaps = 48/240 (20%)

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA 144
            L  E++A       L      ++ L+        T    +L  +  +E   +L+     
Sbjct: 9   ELEQELVAAGEEAESLSFVYRALNKLS-------FTDFVLKLRTEVSQEDRKQLKAI--- 58

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
              Q QL+       I    D+    L V  R LI R                ++E +L+
Sbjct: 59  ---QEQLLAHKPAQYIIGSSDFHGLTLKVDERVLIPRPE-----------TEELVELILS 104

Query: 205 ATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                   +L++  G+G  +L LA  R   ++ A +++  ++  A  N  ++ + N+  V
Sbjct: 105 ENPESSLSVLDIGTGSGAIALALANSRPDWQITASDLSGDALALAAENAQSSGL-NLVFV 163

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPHIL 319
           +    +  Q                   +F  I  +PP    +  D+  + ++ + PH+ 
Sbjct: 164 QSDCLDAIQG------------------KFDIIVSNPPYISEADKDEVGLNVLTSEPHMA 205


>gi|312382192|gb|EFR27733.1| hypothetical protein AND_05214 [Anopheles darlingi]
          Length = 1097

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 21/125 (16%)

Query: 181  RQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
            R    S+       +  H  E            +++ +CG G  ++  A    +V+A++I
Sbjct: 911  RLDRESWFSVTPEKVAAHTAERC------RSDLIVDAFCGCGGNTIQFAFTCQKVIAIDI 964

Query: 240  AKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                +E A++N A     + ++ +                F +L        +  T+F+ 
Sbjct: 965  DPRKIEMAKHNAAVYGVADRIEFITGD-------------FVQLAAAGGGRLKADTVFLS 1011

Query: 299  PPRSG 303
            PP  G
Sbjct: 1012 PPWGG 1016


>gi|307171691|gb|EFN63426.1| Trimethylguanosine synthase-like protein [Camponotus floridanus]
          Length = 1026

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 5/114 (4%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
             +++ +CG G+ S+  A   +RV+A++I    ++ AR+N     V++ ++ +     + 
Sbjct: 869 DTIIDAFCGAGSNSIQFAFTCERVIAIDIDPNKIKIARHNAGIYGVDDRIEFITGDFLQL 928

Query: 270 TQAMRREREF--NRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
              +  +  F        D I    F    + PP  G++       +   H+ Y
Sbjct: 929 APQLVADVVFLSPPWGGPDYIKRKVFNLEDIMPPVGGIN-VFKAAKEITEHVAY 981


>gi|258567546|ref|XP_002584517.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237905963|gb|EEP80364.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 245

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 13/201 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF------QVPNLQIFRSEPIHYRMRAEFHIWHDG 55
                +  YE QL  K   + +    F      QVP ++     P+ Y  R +    H  
Sbjct: 36  GCQFQMLPYEDQLKHKKRIIEKAYSNFSGLNPEQVPAIKETMGSPLQYGYRTKLT-PHFS 94

Query: 56  DDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ-- 113
                    Q+  E   I + M G   +  +    + T  +   L+ +  ++    +Q  
Sbjct: 95  LPFSRKKGPQKLTEVPNIGFMMKGRRTVMDIEDCPLGTDIVRTGLKNERKRVVDNLNQFK 154

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           +   ++     + +     E      D                K+ I   +    E +  
Sbjct: 155 AGATLLVRENTKRIPKNKEEEDTSGNDTTRDVIRTEYPDYIEEKSYITDQKGISSEYI-- 212

Query: 174 AGRTLIYRQIENSFTQPNAGI 194
                ++R +  +F Q N  I
Sbjct: 213 --DDYLFRNVAGTFFQNNNSI 231


>gi|254479291|ref|ZP_05092632.1| Methyltransferase small domain superfamily protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034766|gb|EEB75499.1| Methyltransferase small domain superfamily protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 241

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 17/93 (18%)

Query: 211 GDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
             +++L CGNG   +++A       +  VEI +  V+ A  ++A N + N +KI+    +
Sbjct: 37  DRIVDLGCGNGIIPILIAAKTKDTFIYGVEIQEEMVDMAIRSVAINSLENRIKIIHGDVR 96

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           E  + +  E              +F  +  +PP
Sbjct: 97  EVEKLLGYE--------------KFDVVTSNPP 115


>gi|323219316|gb|EGA03805.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
          Length = 199

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|291616647|ref|YP_003519389.1| Hypothetical Protein PANA_1094 [Pantoea ananatis LMG 20103]
 gi|291151677|gb|ADD76261.1| Hypothetical Protein PANA_1094 [Pantoea ananatis LMG 20103]
          Length = 232

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 57/171 (33%), Gaps = 24/171 (14%)

Query: 189 QPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEA 246
           Q NA      + W+ AA      G  LEL CGNG  +    A    RV  V+I+  +V+ 
Sbjct: 30  QLNAT-----IGWLDAAQFIPTGGTFLELGCGNGAMASHCFAEKGFRVFGVDISAVAVDW 84

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR   AA+ ++     +    +         +        +         + P R+    
Sbjct: 85  ARSRFAASGLSGC-FDQGDVCDLAHYPDATFDV-------VFDGSCFHCLIGPQRAACLK 136

Query: 307 ATVGMVQAYPHILYIS-CNPDSLCRDLS--------ILSTTHTIERLALFD 348
           A   ++ A   ++  S C       DL         ++   H    L   D
Sbjct: 137 ALHRVLAANGTLIISSMCGAPKQRTDLDRYDAHSGVLMVNGHPWRTLKPLD 187


>gi|310659095|ref|YP_003936816.1| ribosomal protein l11 methyltransferase [Clostridium sticklandii
           DSM 519]
 gi|308825873|emb|CBH21911.1| Ribosomal protein L11 methyltransferase [Clostridium sticklandii]
          Length = 312

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 2/122 (1%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           E        L+                 +M    L         +L++ CG+G  S+  A
Sbjct: 135 EEYNAKLNELVIELDPGMAFGTGTHETTNMCIQALERHIDSNCSVLDIGCGSGILSIAAA 194

Query: 229 R-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
           +   DRVL V++   +V+ ++ NI  N++   V+I   +  +           N + DI 
Sbjct: 195 KLGADRVLGVDLDPVAVKVSKENIEQNNLLGFVEIRHGNLMDVVTEKADIVVANIIADIV 254

Query: 287 IH 288
           I 
Sbjct: 255 IK 256


>gi|315231653|ref|YP_004072089.1| N6-adenine-specific RNA methylase [Thermococcus barophilus MP]
 gi|315184681|gb|ADT84866.1| N6-adenine-specific RNA methylase [Thermococcus barophilus MP]
          Length = 365

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
           A I   M E          G +++  CG+G   + LA      R++ +E  K  +  AR 
Sbjct: 204 ASIANAMTELAEVD----GGSVIDPMCGSGTILIELALRGYEGRIIGIEKYKKHLRGARM 259

Query: 250 NIAANH-VNNVKIVRMSSKEFTQ 271
           N  A   ++ ++ ++  + + TQ
Sbjct: 260 NALAAGVLDRIEFIQGDATKLTQ 282


>gi|116753346|ref|YP_842464.1| protein of unknown function Met10 [Methanosaeta thermophila PT]
 gi|116664797|gb|ABK13824.1| methyltransferase [Methanosaeta thermophila PT]
          Length = 328

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E +  A +   GD +++++ G G FSL++A+   RV+A++    + +  + N   N ++ 
Sbjct: 156 ERLRVAEQVRPGDLVVDMFAGVGPFSLLMAKRGARVIAIDKNPCAAKLLKENARMNRLD- 214

Query: 259 VKIVRMSSKEFTQAMRRERE 278
           V+I    +   T+ +  + +
Sbjct: 215 VEIREGDASSLTEDLADKAD 234


>gi|304437371|ref|ZP_07397330.1| ribosomal protein L11 methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369627|gb|EFM23293.1| ribosomal protein L11 methyltransferase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 317

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 69/217 (31%), Gaps = 16/217 (7%)

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARKYQ 148
           +    RLE  L     +I+ L           + H  + D+ W E     +  +H  K  
Sbjct: 67  LPEDERLESSLLTLTERIEGLRRADAPIGAGTVSHVFVADEDWAETW---KAYIHTEKVG 123

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
            +++ R              E  T  G  ++      +     A     M    L     
Sbjct: 124 RRIVVRPT-----------WEEYTPLGDEIVIDLDPGAAFGTGAHATTAMCLRWLEHVVC 172

Query: 209 IQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
               + ++ CG+G  ++  ++     V+A++    +V  A  NI  NHV NV  ++    
Sbjct: 173 PGMRVYDVGCGSGILAIAASKLGAGEVIAMDYDPVAVSVAEENIKQNHVTNVVALQSDLL 232

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                M            DI    F  +     R G+
Sbjct: 233 AVCCGMAPAELITANIIADIIIRLFDQLDQHLARGGV 269


>gi|194017567|ref|ZP_03056178.1| methyltransferase small domain superfamily [Bacillus pumilus ATCC
           7061]
 gi|194010839|gb|EDW20410.1| methyltransferase small domain superfamily [Bacillus pumilus ATCC
           7061]
          Length = 228

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             + GD+L++ CG G   L LA       +  +++ + +VE ++ N   N V+NV+I + 
Sbjct: 83  PDVDGDILDVGCGYGPIGLSLANEMTSRTIHMIDVNERAVELSKENAKHNRVDNVRIYQS 142

Query: 265 S 265
            
Sbjct: 143 D 143


>gi|167855821|ref|ZP_02478573.1| HemK-like protein [Haemophilus parasuis 29755]
 gi|167853034|gb|EDS24296.1| HemK-like protein [Haemophilus parasuis 29755]
          Length = 416

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 21/116 (18%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNI 251
              LEW        +   +L+L  G G  +L LA        ++ ++    +V+ A  N 
Sbjct: 233 EVALEWAYKRLDSSKNLQILDLGTGTGAIALALASELGTKAEIIGIDKQPDAVQLAEKNR 292

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                 NV+ ++               F  LK+      RF  I  +PP    DD 
Sbjct: 293 QKLGFENVRFLQSD------------WFEALKNQ-----RFDLIVSNPPYIDKDDE 331


>gi|159905453|ref|YP_001549115.1| methyltransferase small [Methanococcus maripaludis C6]
 gi|159886946|gb|ABX01883.1| methyltransferase small [Methanococcus maripaludis C6]
          Length = 260

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L  G+G  +++ AR   +V AVE+   + E  + N+  N+  N+K++   +  +  +
Sbjct: 38  VFDLGTGSGILAMIAARTAKQVYAVELDPITTEYTKENVKENNFKNIKVIEDDAAYYPFS 97

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
            + +     L D  + +     +       GL      ++   P  +Y S
Sbjct: 98  EKADVVIAELLDTGLITEPQVPVLNSIIEKGLLKEGGIII---PEEVYNS 144


>gi|14520648|ref|NP_126123.1| hypothetical protein PAB0284 [Pyrococcus abyssi GE5]
 gi|5457864|emb|CAB49354.1| Predicted rRNA or tRNA methylase [Pyrococcus abyssi GE5]
          Length = 197

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           L +     +Y   E++F      +   +LE V          +L++  G+G  +L+ A+ 
Sbjct: 8   LRIEVEESVYEPAEDTFL-----LAEALLEEVREDDI-----VLDVGTGSGILALLAAKK 57

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              V+ ++I + +++ A  N   N + NV  V   
Sbjct: 58  AKFVVGLDINEKAIDLAWRNAQLNGIKNVVFVVSD 92


>gi|323476128|gb|ADX86734.1| Methyltransferase type 11 [Sulfolobus islandicus REY15A]
 gi|323478851|gb|ADX84089.1| methyltransferase type 11 [Sulfolobus islandicus HVE10/4]
          Length = 243

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             ++  +L++ CG G  S  LA    +V  ++I++  +  AR N     + N K +    
Sbjct: 39  YKLEKKVLDVPCGIGRVSYFLANRGYKVTGIDISERMISMARAN-----IQNGKFIVGDM 93

Query: 267 KEFTQAMRRER---EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           ++  + +  E+     N    +  +S       ++  R+      V  +    +I+Y
Sbjct: 94  RKIKEIIGNEKYDLVINIYNSLGYYSEEDDLKILESLRNSTRKILVINLDNRDYIIY 150


>gi|319654859|ref|ZP_08008934.1| hypothetical protein HMPREF1013_05556 [Bacillus sp. 2_A_57_CT2]
 gi|317393422|gb|EFV74185.1| hypothetical protein HMPREF1013_05556 [Bacillus sp. 2_A_57_CT2]
          Length = 200

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 20/102 (19%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +G++L++ CG G   L  A+      V  V++ + ++  A+ N   N + NV+I   
Sbjct: 56  PEAEGNILDVGCGYGPIGLTAAKLMPERTVHMVDVNERALGLAKENAELNGIKNVQIYES 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
              E T+                   +F  I  +PP R+G  
Sbjct: 116 DRLENTK-----------------GNKFAAILTNPPIRAGKK 140


>gi|297571643|ref|YP_003697417.1| methyltransferase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931990|gb|ADH92798.1| methyltransferase [Arcanobacterium haemolyticum DSM 20595]
          Length = 187

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 19/109 (17%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D+L+L+ G+G  +L  L+R   R + V+ A+ ++ A   N                   T
Sbjct: 46  DVLDLFAGSGALALEALSRGATRAIGVDSAEEAIRAMNANARE----------------T 89

Query: 271 QAMRREREFNRLKDIDIHSYR--FKTIFVDPPRSGLDDATVGMVQAYPH 317
           Q   +  +   L  +        F  I +DPP    DD+   ++   P 
Sbjct: 90  QLPLKAIKSQVLTYVSQPGTDGPFDVIILDPPYDFPDDSLTAILHELPR 138


>gi|229586224|ref|YP_002844726.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.27]
 gi|238621209|ref|YP_002916035.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.4]
 gi|228021274|gb|ACP56681.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.27]
 gi|238382279|gb|ACR43367.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.4]
          Length = 243

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             ++  +L++ CG G  S  LA    +V  ++I++  +  AR N     + N K +    
Sbjct: 39  YKLEKKVLDVPCGIGRVSYFLANRGYKVTGIDISERMISMARAN-----IQNGKFIVGDM 93

Query: 267 KEFTQAMRRER---EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           ++  + +  E+     N    +  +S       ++  R+      V  +    +I+Y
Sbjct: 94  RKIKEIIGNEKYDLVINIYNSLGYYSEEDDLKILESLRNSTRKILVINLDNRDYIIY 150


>gi|227829014|ref|YP_002830794.1| methyltransferase type 11 [Sulfolobus islandicus M.14.25]
 gi|227460810|gb|ACP39496.1| Methyltransferase type 11 [Sulfolobus islandicus M.14.25]
          Length = 243

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             ++  +L++ CG G  S  LA    +V  ++I++  +  AR N     + N K +    
Sbjct: 39  YKLEKKVLDVPCGIGRVSYFLANRGYKVTGIDISERMISMARAN-----IQNGKFIVGDM 93

Query: 267 KEFTQAMRRER---EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           ++  + +  E+     N    +  +S       ++  R+      V  +    +I+Y
Sbjct: 94  RKIKEIIGNEKYDLVINIYNSLGYYSEEDDLKILESLRNSTRKILVINLDNRDYIIY 150


>gi|227831752|ref|YP_002833532.1| Methyltransferase type 11 [Sulfolobus islandicus L.S.2.15]
 gi|229580716|ref|YP_002839116.1| Methyltransferase type 11 [Sulfolobus islandicus Y.G.57.14]
 gi|284999318|ref|YP_003421086.1| Methyltransferase type 11 [Sulfolobus islandicus L.D.8.5]
 gi|227458200|gb|ACP36887.1| Methyltransferase type 11 [Sulfolobus islandicus L.S.2.15]
 gi|228011432|gb|ACP47194.1| Methyltransferase type 11 [Sulfolobus islandicus Y.G.57.14]
 gi|284447214|gb|ADB88716.1| Methyltransferase type 11 [Sulfolobus islandicus L.D.8.5]
          Length = 243

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             ++  +L++ CG G  S  LA    +V  ++I++  +  AR N     + N K +    
Sbjct: 39  YKLEKKVLDVPCGIGRVSYFLANRGYKVTGIDISERMISMARAN-----IQNGKFIVGDM 93

Query: 267 KEFTQAMRRER---EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           ++  + +  E+     N    +  +S       ++  R+      V  +    +I+Y
Sbjct: 94  RKIKEIIGNEKYDLVINIYNSLGYYSEEDDLKILESLRNSTRKILVINLDNRDYIIY 150


>gi|229583566|ref|YP_002841965.1| Methyltransferase type 11 [Sulfolobus islandicus Y.N.15.51]
 gi|228014282|gb|ACP50043.1| Methyltransferase type 11 [Sulfolobus islandicus Y.N.15.51]
          Length = 243

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 8/117 (6%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             ++  +L++ CG G  S  LA    +V  ++I++  +  AR N     + N K +    
Sbjct: 39  YKLEKKVLDVPCGIGRVSYFLANRGYKVTGIDISERMISMARAN-----IQNGKFIVGDM 93

Query: 267 KEFTQAMRRER---EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           ++  + +  E+     N    +  +S       ++  R+      V  +    +I+Y
Sbjct: 94  RKIKEIIGNEKYDLVINIYNSLGYYSEEDDLKILESLRNSTRKILVINLDNRDYIIY 150


>gi|20806632|ref|NP_621803.1| SAM-dependent methyltransferase [Thermoanaerobacter tengcongensis
           MB4]
 gi|20515079|gb|AAM23407.1| SAM-dependent methyltransferases [Thermoanaerobacter tengcongensis
           MB4]
          Length = 251

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 17/93 (18%)

Query: 211 GDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
             +++L CGNG   +++A       +  VEI +  V+ A  ++A N + N +KI+    +
Sbjct: 47  DRIVDLGCGNGIIPILIAAKTKDTFIYGVEIQEEMVDMAIRSVAINSLENRIKIIHGDVR 106

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           E  + +  E              +F  +  +PP
Sbjct: 107 EVEKLLGYE--------------KFDVVTSNPP 125


>gi|76801331|ref|YP_326339.1| hypothetical protein NP1360A [Natronomonas pharaonis DSM 2160]
 gi|76557196|emb|CAI48771.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
          Length = 345

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFT 270
            + +++ G G F+L +AR    V A EI   +      N+  N V + V+ V    ++  
Sbjct: 201 RVFDMFAGIGYFTLPMARSGATVTAAEIDPDAYRLLVENLQLNGVSDAVRPVLGDCRDVA 260

Query: 271 QAMRRE----REFNRLKDIDIHSYRFKTIF 296
               R      + +   D  + +     + 
Sbjct: 261 TTADRVVMGYYDAHEYLDAALSALAPDGVV 290


>gi|225164568|ref|ZP_03726817.1| hypothetical protein ObacDRAFT_6144 [Opitutaceae bacterium TAV2]
 gi|224800827|gb|EEG19174.1| hypothetical protein ObacDRAFT_6144 [Opitutaceae bacterium TAV2]
          Length = 250

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++E  + A     G   +L CG GNF+ +LA HF RV A +++   ++ AR   A + ++
Sbjct: 28  LVERHVRALADADGTAADLGCGVGNFTPLLAEHFGRVHACDLSPRLLDQARR--ACDGLD 85

Query: 258 NVKIVRMS 265
           NV   +  
Sbjct: 86  NVVFQQTD 93


>gi|219870998|ref|YP_002475373.1| HemK-like protein/protein-glutamine N-methyl transferase
           [Haemophilus parasuis SH0165]
 gi|219691202|gb|ACL32425.1| HemK-like protein/protein-glutamine N-methyl transferase
           [Haemophilus parasuis SH0165]
          Length = 289

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 21/116 (18%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNI 251
              LEW        +   +L+L  G G  +L LA        ++ ++    +V+ A  N 
Sbjct: 106 EVALEWAYKRLDSSKNLQILDLGTGTGAIALALASELGTKAEIIGIDKQPDAVQLAEKNR 165

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                 NV+ ++               F  LK+      RF  I  +PP    DD 
Sbjct: 166 QKLGFENVRFLQSD------------WFEALKNQ-----RFDLIVSNPPYIDKDDE 204


>gi|161869172|ref|YP_001598338.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           053442]
 gi|254804158|ref|YP_003082379.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           alpha14]
 gi|189037623|sp|A9M0C4|UBIG_NEIM0 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|161594725|gb|ABX72385.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           053442]
 gi|254667700|emb|CBA03563.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria meningitidis
           alpha14]
          Length = 238

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 34  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 94  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 139


>gi|56460032|ref|YP_155313.1| hypothetical protein IL0924 [Idiomarina loihiensis L2TR]
 gi|56179042|gb|AAV81764.1| Protoporphyrinogen oxidase [Idiomarina loihiensis L2TR]
          Length = 281

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 62/183 (33%), Gaps = 30/183 (16%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W E  +      H  +  +          I   R++    L V   TLI R         
Sbjct: 42  WPEKPLTQEQQRHYEECILARQKGKPVAHITGRREFWSLMLEVNASTLIPRPD------- 94

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
                  ++E  L+        +L+L  G G  +L L   R   +V A + +  +VE AR
Sbjct: 95  ----TETLVEAALSLELPENARVLDLGTGTGAVALALKSERPGWQVWACDKSGDAVELAR 150

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N  A  + NV+I+                 N  + +   S +F  I  +PP     D  
Sbjct: 151 RNSQALGL-NVEILC---------------SNWFQSVP-KSLKFDLILSNPPYIDAGDPH 193

Query: 309 VGM 311
           + M
Sbjct: 194 LSM 196


>gi|328953125|ref|YP_004370459.1| Ribosomal protein L11 methyltransferase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453449|gb|AEB09278.1| Ribosomal protein L11 methyltransferase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 298

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 34/183 (18%)

Query: 190 PNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           P+  + +  LE V           +L++  G G   L  AR   RVLA+++   ++ AAR
Sbjct: 143 PSTWLCLKALEEVTYNWSQHPPRWVLDVGTGTGILGLAAARLGARVLAIDVDPEALAAAR 202

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD---PPRSGLD 305
            NI  N ++++    M  ++   +  R+              +F  IF +   P    L 
Sbjct: 203 ENILLNELHDL----MRVEDLPLSAIRQ--------------QFDLIFANLTAPDLQTLA 244

Query: 306 DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHME---CGVLL 362
           ++  G +     ++ IS     L  DL  +      + L        T H++     ++L
Sbjct: 245 ESLAGRLLPEGQMI-IS---GFLQTDLPEMEERFRAQGLQSV----QT-HLKDDWAVLVL 295

Query: 363 VRK 365
            R+
Sbjct: 296 KRR 298


>gi|289192702|ref|YP_003458643.1| methylase [Methanocaldococcus sp. FS406-22]
 gi|288939152|gb|ADC69907.1| methylase [Methanocaldococcus sp. FS406-22]
          Length = 197

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             ++LE+  G G  S+  A+    +V+ V+I   +V+ A+ N   N+V+ +  
Sbjct: 35  NKEVLEIGIGTGLISIACAKKGAKKVVGVDINPYAVKLAKENAKLNNVDVLFF 87


>gi|262301023|gb|ACY43104.1| arg methyltransferase [Armadillidium vulgare]
          Length = 243

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L++ CG G  S+  A+    +V  +E++   VE A+  IAAN+ +N++I+    +E 
Sbjct: 26  VLDVGCGTGILSMFAAKAGAAKVYGIEMSNI-VEQAKKIIAANNFDNIEIIHGKVEEV 82


>gi|197120813|ref|YP_002132764.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Anaeromyxobacter sp. K]
 gi|196170662|gb|ACG71635.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Anaeromyxobacter sp. K]
          Length = 286

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 21/129 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++           G  L+L  G+G   + LA  R   RV+A +++  ++  A  N  
Sbjct: 102 ETELVLEAARDALPEGGAALDLCTGSGALGVSLALERPGARVVATDLSADALAVAAENAR 161

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATVG 310
           A            + +  Q          L        RF  I  +PP    G  D    
Sbjct: 162 ALGA---------AVDLRQ--------GDLWAPLREGERFDVIVSNPPYVPRGELDTLPR 204

Query: 311 MVQAYPHIL 319
            V+  P + 
Sbjct: 205 EVRREPRLA 213


>gi|329664270|ref|NP_001192627.1| trimethylguanosine synthase [Bos taurus]
 gi|297482318|ref|XP_002692697.1| PREDICTED: hypothetical protein [Bos taurus]
 gi|296480654|gb|DAA22769.1| hypothetical protein BOS_13850 [Bos taurus]
          Length = 852

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 18/103 (17%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKE 268
            G +++ +CG G  ++  A    RV+A++I    ++ AR N      V+ ++ +      
Sbjct: 690 SGTIVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEIYGVVDKIEFICGD--- 746

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           F Q                 S +   +F+ PP  G D AT  +
Sbjct: 747 FLQL--------------ASSLKADVVFLSPPWGGPDYATAEI 775


>gi|297181090|gb|ADI17289.1| methylase of polypeptide chain release factors [uncultured alpha
           proteobacterium HF0070_17D04]
          Length = 296

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 31/147 (21%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLEL 216
           ++I   R++   RL +   TL  R   +S           ++   LAAT   +   +L+L
Sbjct: 76  SRIRGWREFWTLRLELTPATLDPR--PDS---------ETIVAAALAATDPRKPCRMLDL 124

Query: 217 YCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAM 273
            CG G   L     R       V+IA  +VEAA  N   N +      V           
Sbjct: 125 GCGTGALLLACLSERPDATGTGVDIAGEAVEAATRNAGKNGLSARADFVIGD-------- 176

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPP 300
                     D D+    +  I  +PP
Sbjct: 177 --------FSDPDVAPGIYDLILCNPP 195


>gi|304388644|ref|ZP_07370706.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis ATCC 13091]
 gi|304337390|gb|EFM03562.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           meningitidis ATCC 13091]
          Length = 243

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 39  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 98

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 99  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 144


>gi|261393356|emb|CAX50992.1| 3-demethylubiquinone-9 3-methyltransferase
           (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase;
           DHHB methyltransferase) [Neisseria meningitidis 8013]
          Length = 238

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 34  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 94  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 139


>gi|307352999|ref|YP_003894050.1| hypothetical protein Mpet_0841 [Methanoplanus petrolearius DSM
           11571]
 gi|307156232|gb|ADN35612.1| protein of unknown function Met10 [Methanoplanus petrolearius DSM
           11571]
          Length = 266

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 166 YVDER-LTVAGR-TLIYRQ-IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
           Y D R +TV     L Y   +++SF   N  +    +   +AA       +L  + G G 
Sbjct: 79  YGDPRTVTVHRESGLSYMVDLKDSFF--NPRLCTERMR--VAAMVNGNEIVLVPFAGVGP 134

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRERE 278
           F+++ A+    V AVE+   +    R N+  N  +  ++I+R  + +       E +
Sbjct: 135 FAILPAKRGANVYAVEMNPAACGWLRKNMELNDASGSLEIIRGDAHDIPDIFSTEFD 191


>gi|262404020|ref|ZP_06080575.1| hypothetical protein VOA_002008 [Vibrio sp. RC586]
 gi|262349052|gb|EEY98190.1| hypothetical protein VOA_002008 [Vibrio sp. RC586]
          Length = 397

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 30/180 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH       L+   N  KI +D       +    +T  Y    +S  Q  
Sbjct: 163 KEGLEERVGVLHGELPPKSLVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ-- 213

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                       +       ++L  +   G F L  L     RV+  ++++P+++ A+ N
Sbjct: 214 ------------SMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKLN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N             +          F  L++      RF  + +DPP+     A + 
Sbjct: 262 AELNG--------FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 313


>gi|296108940|ref|YP_003615889.1| ribosomal L11 methyltransferase [Methanocaldococcus infernus ME]
 gi|295433754|gb|ADG12925.1| ribosomal L11 methyltransferase [Methanocaldococcus infernus ME]
          Length = 201

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 32/146 (21%)

Query: 190 PNAGINVHML--------EWVLAATKGIQGD-LLELYCGNGNFSLVLAR--HFDRVLAVE 238
           PN  + +           E +  A K   G  +L+L CG G  ++  A+     R + ++
Sbjct: 17  PNPKVELEQYTISGSLASELLFLAQKDFIGKTVLDLGCGTGRLAIG-AKLLGAKRAVGID 75

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I + S+E A+ N  A  V+ V+ +    +   + M  E                  +  +
Sbjct: 76  IDRESIEVAKENAKALGVD-VEFICNDVRNIKREMFDEEV---------------VVIQN 119

Query: 299 PP----RSGLDDATVGMVQAYPHILY 320
           PP    + G D   +        ++Y
Sbjct: 120 PPFGAQKKGSDRIFLEKALELGDVIY 145


>gi|148643508|ref|YP_001274021.1| SAM-dependent methyltransferase [Methanobrevibacter smithii ATCC
           35061]
 gi|148552525|gb|ABQ87653.1| SAM-dependent methyltransferase [Methanobrevibacter smithii ATCC
           35061]
          Length = 272

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                LL+L CG G+ +L +A+   +V  V+ +   +E         ++ NV  +  S +
Sbjct: 58  NENDSLLDLGCGEGSITLPIAKQVRKVTGVDSSTKMLELLNQRAQEQNIKNVDTILKSLE 117

Query: 268 EFT 270
           + +
Sbjct: 118 DIS 120


>gi|322487896|emb|CBZ23140.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 321

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           +++++CG G F+L LA H     + A+E    S++  + N   N V++ +  V   ++E 
Sbjct: 164 VVDMFCGIGYFTLPLAMHGNVAAIHALEKNPDSIDFVKLNAVLNKVDHLIHPVCGDNREV 223

Query: 270 TQAMRR 275
            + +  
Sbjct: 224 GEELLG 229


>gi|307187716|gb|EFN72688.1| tRNA (guanine-N(1)-)-methyltransferase [Camponotus floridanus]
          Length = 452

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           E     T  +Q D+L +++ G G F++  AR   +V A ++   S +  + N AAN + N
Sbjct: 245 EHTRMTTFMMQDDVLYDVFAGVGPFAIPAARKKIQVFANDLNPESYKWLQKNAAANKLKN 304

Query: 258 NVKIVRMSSKEFTQAMRREREFNR 281
           N K   M  ++F + + ++   +R
Sbjct: 305 NFKAFNMDGRDFLRNIVKDDILSR 328


>gi|283832856|ref|ZP_06352597.1| protein-(glutamine-N5) methyltransferase [Citrobacter youngae ATCC
           29220]
 gi|291071456|gb|EFE09565.1| protein-(glutamine-N5) methyltransferase [Citrobacter youngae ATCC
           29220]
          Length = 277

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPASACRILDLGTGTGAIALALASERPDCAVTAVDRMPDAVALAMRNTRHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++NV++++                       +   +F  I  +PP
Sbjct: 158 IDNVQVLQSD-----------------WFSALSGQQFDMIVSNPP 185


>gi|254465429|ref|ZP_05078840.1| SAM-dependent methyltransferase [Rhodobacterales bacterium Y4I]
 gi|206686337|gb|EDZ46819.1| SAM-dependent methyltransferase [Rhodobacterales bacterium Y4I]
          Length = 404

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            A        +L+++   G F L  LA    +   V+ +  ++E A     A    +   
Sbjct: 223 AARLTAPGARVLDVFSHVGGFGLAMLAGGAGQATCVDGSAAALELAAQGAEAGGFKDKFT 282

Query: 262 VR-MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
            R   + +   A+  E E             F  +  DPP        +   ++AY  + 
Sbjct: 283 ARQGDAFDVLTALGEEGE------------SFDVVICDPPAFAPSKQALEAGLRAYERVA 330


>gi|143679771|sp|Q4R3U8|TYW2_MACFA RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
          Length = 448

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 76/235 (32%), Gaps = 16/235 (6%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    ++  A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 108 CLEVSRWVEGRGVKWSAELEAD--LPRSWQRHGNLLLLSEDCFQANQWKNLGPELWETVA 165

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 166 SALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGILYKFDVTQCMFSF------ 219

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 220 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 277

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +  N   +  +I    +++   +   +R    L       +      +     G+
Sbjct: 278 LEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGI 332


>gi|13475623|ref|NP_107190.1| methyl transferase [Mesorhizobium loti MAFF303099]
 gi|14026379|dbj|BAB52976.1| probable methyl transferase [Mesorhizobium loti MAFF303099]
          Length = 230

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANH-VNN 258
           VL         ++++ CG GN +  +A H    RV A ++    V+ AR N A +   + 
Sbjct: 46  VLHQMNLPAPRIVDMCCGTGNLACAIAHHIPAARVWASDLTDGCVDVARRNAAHHGMADR 105

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAY 315
           V +++    +    +  +R                 I  +PP      L+     +V+  
Sbjct: 106 VSVLQGDLFDALSGLGLDRTI-------------DVIVCNPPYISEKRLEGDRAHLVELE 152

Query: 316 PH 317
           P 
Sbjct: 153 PR 154


>gi|262197522|ref|YP_003268731.1| methyltransferase type 11 [Haliangium ochraceum DSM 14365]
 gi|262080869|gb|ACY16838.1| Methyltransferase type 11 [Haliangium ochraceum DSM 14365]
          Length = 415

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNG---NFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
             MLE            +L L CG G     +  L      V+ ++IA   V  A     
Sbjct: 35  QKMLEQA---RLQTGETVLNLGCGTGMDSFLTAPLIGEEGSVVGIDIAPEMVRLANEKAG 91

Query: 253 ANHVNNVKIVRMSSKEF 269
           +  ++NV    M +++ 
Sbjct: 92  SRGLDNVTFQVMDAEKL 108


>gi|268591533|ref|ZP_06125754.1| putative methyltransferase [Providencia rettgeri DSM 1131]
 gi|291312987|gb|EFE53440.1| putative methyltransferase [Providencia rettgeri DSM 1131]
          Length = 272

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 14/124 (11%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +++ +           LL++ CG G+ SL LA  F   + ++ ++  +E A       ++
Sbjct: 47  YLVRFRELMDLAGAETLLDVGCGPGSVSLSLANEFKETIGIDYSRGMLEMAELRAKELNI 106

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            N +          + +  E +++ L  +DI      T+  D     L  A + + +   
Sbjct: 107 PNARF---------EQLAWEDDWSSLPKVDISVASRSTLVDD-----LKAALLKLNRQTK 152

Query: 317 HILY 320
             +Y
Sbjct: 153 LRVY 156


>gi|319409660|emb|CBY89961.1| 3-demethylubiquinone-9 3-methyltransferase
           (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase;
           DHHB methyltransferase) [Neisseria meningitidis WUE
           2594]
          Length = 238

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 34  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 94  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 139


>gi|269213961|ref|ZP_05983248.2| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria cinerea
           ATCC 14685]
 gi|269145021|gb|EEZ71439.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria cinerea
           ATCC 14685]
          Length = 243

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 39  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 98

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++  +A     +     ++  H      I 
Sbjct: 99  AALNNVADIEYECIRVEDLAEAEPHSFDVVTCMEMMEHVPDPAAIV 144


>gi|213617487|ref|ZP_03372313.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 262

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVR 263
           + NV+I++
Sbjct: 158 IRNVRILQ 165


>gi|146085575|ref|XP_001465317.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|321398858|emb|CBZ08309.1| conserved hypothetical protein [Leishmania infantum JPCM5]
 gi|322496175|emb|CBZ31246.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 390

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           +++++CG G F+L LA H     + A+E    S++  + N   N V++ ++ V   ++E 
Sbjct: 233 VVDMFCGIGYFTLPLAMHGNVAAIHALEKNPDSIDFLKLNAVLNKVDHLIRPVCGDNREV 292

Query: 270 TQAMRR 275
            + +  
Sbjct: 293 GEELLG 298


>gi|303243574|ref|ZP_07329916.1| methyltransferase small [Methanothermococcus okinawensis IH1]
 gi|302486135|gb|EFL49057.1| methyltransferase small [Methanothermococcus okinawensis IH1]
          Length = 201

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V A       D+L++ CG G   + +A   + +   +I K +V  A+ NI  N  +  K 
Sbjct: 48  VEALKLNKNYDVLDIGCGYGVVGIAIADEVNSITMTDINKRAVRLAKENIKLNDTSKDKN 107

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +R+   +  +              ++    +  I  +PP     +    +++    +L
Sbjct: 108 IRVVQGDLYE--------------NVKDKNYDMIISNPPIKAGKETIHRIIKEGKELL 151


>gi|261350436|ref|ZP_05975853.1| methyltransferase domain protein [Methanobrevibacter smithii DSM
           2374]
 gi|288861219|gb|EFC93517.1| methyltransferase domain protein [Methanobrevibacter smithii DSM
           2374]
          Length = 272

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                LL+L CG G+ +L +A+   +V  V+ +   +E         ++ NV  +  S +
Sbjct: 58  NENDSLLDLGCGEGSITLPIAKQVRKVTGVDSSTKMLELLNQRAQEQNIKNVDTILKSLE 117

Query: 268 EFT 270
           + +
Sbjct: 118 DIS 120


>gi|149191042|ref|ZP_01869302.1| putative SAM-dependent methyltransferase [Vibrio shilonii AK1]
 gi|148835070|gb|EDL52047.1| putative SAM-dependent methyltransferase [Vibrio shilonii AK1]
          Length = 396

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 32/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH       ++   N  KI +D       +    +T  Y    +S  Q  
Sbjct: 163 KEGLRERTGVLHGETPSKPVVIEENGVKISVD-------IINGHKTGFYLDQRDSRYQ-- 213

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                       A       ++L  +   G F L  L     RV+  ++++ +++ A++N
Sbjct: 214 ------------AQKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQLALDTAKHN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N     K     + +  + +R  R+            +F  + +DPP+     A + 
Sbjct: 262 AELNGFTEKKKAVFLNADVFKLLREYRD---------QGTKFDVVIMDPPKFAESKAQLN 312

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 313 GACRGYKDI 321


>gi|326491707|dbj|BAJ94331.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 370

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 11/98 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L C +G F+L  A+     V  ++ +  +++ A  NI  N ++  + +    ++ T
Sbjct: 280 RVLDLCCYSGGFALSAAKGGATNVTGIDSSGSALDLANENILLNKLD-AERISFLKEDAT 338

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
             M+     N L D+         + +DPP+       
Sbjct: 339 AFMKGAISRNELWDL---------VILDPPKLAPRKKV 367


>gi|170085613|ref|XP_001874030.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164651582|gb|EDR15822.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 458

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 22/207 (10%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR-----------ECAIRLR 139
                 + +L+A L       S +  A+   I H  L+D +            E   +++
Sbjct: 111 YDYWTADEILQAFLPPDLRERSPTGFAMTGHIAHVNLNDEYLPYKHIIGQLILEKNKKVK 170

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVH 197
             ++                I  D D+V E      R   +      F+Q   N+ ++  
Sbjct: 171 TVVNKLNNIDTQFRFFKMELIAGDADFVVEHHESDCR-FTF-----DFSQVYWNSRLHTE 224

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
             + ++      +  + +++ G G F++  A+    VLA ++   S +    N+  N V 
Sbjct: 225 H-DRLVRLFNPTE-VVADVFAGVGPFAVPAAKKGCAVLANDLNPNSEKYLAINVKNNQVT 282

Query: 258 N-VKIVRMSSKEFTQAMRREREFNRLK 283
           + V+      ++F      E   N   
Sbjct: 283 DLVRTFCQDGRDFICQCILELSDNPFP 309


>gi|167516500|ref|XP_001742591.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779215|gb|EDQ92829.1| predicted protein [Monosiga brevicollis MX1]
          Length = 216

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 16/130 (12%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARY 249
           A I  HM   +  A   + G  +++L CG G  S+  A +  D VLAV+I   +++ A  
Sbjct: 31  AHIAAHMAFTMENAFGDLLGKTVVDLGCGCGMLSIACALQGADHVLAVDIDSAALDIALD 90

Query: 250 NIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           N A   + +++  V   +                  +   + +  T+ ++PP     +A 
Sbjct: 91  NAARLELEDDIDFVLADA-------------PWPLALGPGARQVDTVVMNPPFGTKHNAG 137

Query: 309 VGMVQAYPHI 318
           + ++     I
Sbjct: 138 LDVLFLRRAI 147


>gi|42781230|ref|NP_978477.1| hypothetical protein BCE_2164 [Bacillus cereus ATCC 10987]
 gi|42737152|gb|AAS41085.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 231

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +LE ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       
Sbjct: 25  LLEKLVLQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA-----P 79

Query: 258 NVKIVRMSSKEF 269
           N   +   ++ F
Sbjct: 80  NATFIVDDARYF 91


>gi|312879663|ref|ZP_07739463.1| SAM dependent methyl transferase [Aminomonas paucivorans DSM 12260]
 gi|310782954|gb|EFQ23352.1| SAM dependent methyl transferase [Aminomonas paucivorans DSM 12260]
          Length = 398

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 201 WVLAATKGIQG-DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           WV    +  +G  +L+ +   G+F L  LA   +RV+A+E +  +V  A      N + +
Sbjct: 209 WVRPLLERFEGARVLDAFSYQGHFGLHALAAGAERVVALEQSDEAVALAVRGRGINALPD 268

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV---GMVQA 314
            ++ +R ++ +  + + R  +   +  +D   +      ++  R G  D  +    +++ 
Sbjct: 269 RMEWMRGNAFDSLRELERRGDRFDVAVLDPPPFSPSRGQLEGARRGYKDLALRAFRLLEP 328

Query: 315 YPHILYISC 323
              +L+ SC
Sbjct: 329 GGTLLFGSC 337


>gi|240139856|ref|YP_002964333.1| putative methyltransferase small [Methylobacterium extorquens AM1]
 gi|254562275|ref|YP_003069370.1| methyltransferase small [Methylobacterium extorquens DM4]
 gi|240009830|gb|ACS41056.1| putative methyltransferase small [Methylobacterium extorquens AM1]
 gi|254269553|emb|CAX25519.1| putative methyltransferase small [Methylobacterium extorquens DM4]
          Length = 250

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 12/111 (10%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARY 249
           AG +  +L  +LA   G    L +L    G   L +AR     RV+ VE     V  AR 
Sbjct: 25  AGTDAVLLARLLAPAPGAT--LYDLGAATGAVGLAVARLTEVGRVVLVERDPDLVALARE 82

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N AAN ++  ++  + +      ++R           +       +  +PP
Sbjct: 83  NAAANGLDG-RVAVIEADLLAPGVQRR-------AAGLEPDSADIVLTNPP 125


>gi|90578896|ref|ZP_01234706.1| putative SAM-dependent methyltransferase [Vibrio angustum S14]
 gi|90439729|gb|EAS64910.1| putative SAM-dependent methyltransferase [Vibrio angustum S14]
          Length = 396

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH--VNNVKIVRMSSK 267
             +L  +C  G F L  L      V+ V++++ +++ A  N   N   V N + +     
Sbjct: 222 KRVLNCFCYTGGFGLYALKGGAKEVVNVDVSQHALDTALQNAQDNGFPVENAQFLNADVF 281

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +  +  R   E             F  + +DPP+        VG  + Y  I
Sbjct: 282 KLLREYRDRGEL------------FDVVIMDPPKFAESKSQLVGACRGYKDI 321


>gi|126175494|ref|YP_001051643.1| PUA domain-containing protein [Shewanella baltica OS155]
 gi|160876621|ref|YP_001555937.1| PUA domain-containing protein [Shewanella baltica OS195]
 gi|217972250|ref|YP_002357001.1| PUA domain-containing protein [Shewanella baltica OS223]
 gi|224493223|sp|A3D7R1|RLMI_SHEB5 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|224493225|sp|A9L0P6|RLMI_SHEB9 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|125998699|gb|ABN62774.1| SAM-dependent methyltransferase [Shewanella baltica OS155]
 gi|160862143|gb|ABX50677.1| PUA domain containing protein [Shewanella baltica OS195]
 gi|217497385|gb|ACK45578.1| PUA domain containing protein [Shewanella baltica OS223]
 gi|315268818|gb|ADT95671.1| PUA domain containing protein [Shewanella baltica OS678]
          Length = 396

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV--N 257
             +AA       +L  +C  G F L  A+     +  V+++  ++  AR N+  N +  +
Sbjct: 212 RAIAARFVKDKSVLNCFCYTGTFGLYAAKAGAASIENVDVSSLALATARLNMQVNGLSDD 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP 316
           NV        +  +  R E               F  I +DPP+   + A + G  + Y 
Sbjct: 272 NVHYNEADVFKLLRLYRDE------------GKTFDVIVLDPPKFADNKAQLNGACRGYK 319

Query: 317 HILYISCNPDSLCRDLSILSTT-----HTIERLALFDQF 350
            I  I+         L +L+        +   L   D F
Sbjct: 320 DINMIA---------LQLLNPGGVLLTFSCSGLMPADLF 349


>gi|119356808|ref|YP_911452.1| SAM-dependent methyltransferase [Chlorobium phaeobacteroides DSM
           266]
 gi|119354157|gb|ABL65028.1| SAM-dependent methyltransferase [Chlorobium phaeobacteroides DSM
           266]
          Length = 393

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            D+L+++  +G F+L  L     R   ++ +K ++E A  N   N+ +  +++   + E 
Sbjct: 220 ADVLDVFTNDGGFALNALYAGAARATLIDSSKEALERADNNARLNNFSEYRLIAADAFET 279

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
              M  ++E             F  + +DPP    +       ++AY  I
Sbjct: 280 LGIMTEQKE------------SFDVVILDPPSFAKNRKNLATALKAYKRI 317


>gi|330446214|ref|ZP_08309866.1| 23S rRNA m5C1962 methyltransferase monomer [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490405|dbj|GAA04363.1| 23S rRNA m5C1962 methyltransferase monomer [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 396

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH--VNNVKIVRMSSK 267
             +L  +C  G F L  L      V+ V++++ +++ A  N   N   V N + +     
Sbjct: 222 KRVLNCFCYTGGFGLYALKGGAKEVVNVDVSQHALDTALKNAQDNGYPVENAQFLNADVF 281

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +  +  R   E             F  + +DPP+        VG  + Y  I
Sbjct: 282 KLLREYRDRGEL------------FDVVIMDPPKFAESKSQLVGACRGYKDI 321


>gi|241667854|ref|ZP_04755432.1| HemK family modification methylase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876396|ref|ZP_05249106.1| modification methylase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842417|gb|EET20831.1| modification methylase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 285

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 32/155 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
           I   + + +++L V   TLI R                ++  VL   +     L  L+L 
Sbjct: 75  ILGYKYFWNQKLYVTKDTLIPR-----------ADTEVIVAAVLDDIQDKNAQLKILDLG 123

Query: 218 CGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G+G  +L LA    R  V+AV++   +++ A+ N  AN + NV        EF Q+   
Sbjct: 124 AGSGAIALALADELPRSQVVAVDLYSKTLDVAKKNALANKIVNV--------EFMQSSWY 175

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           E         ++   +F  I  +PP   +DDA + 
Sbjct: 176 E---------NLDGTKFDIIVSNPPYIDVDDANID 201


>gi|111225293|ref|YP_716087.1| N5-glutamine methyltransferase [Frankia alni ACN14a]
 gi|111152825|emb|CAJ64569.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Frankia alni ACN14a]
          Length = 309

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 195 NVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
              ++ W LAA   + G     ++L  G+G  +L LA      RV AVE+   ++   R 
Sbjct: 106 TESVVGWALAALPSVSGGGPVCVDLCAGSGAIALSLAGEVPGARVHAVEVDPAALGWLRR 165

Query: 250 NIAANHVN--------NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           N+AA+ +             +   ++              L D D      +    DPPR
Sbjct: 166 NVAASGLPVTVHEADVTAPPIASLARLAGSVDLVVSNPPYLPDADRDEVEPEVGEHDPPR 225

Query: 302 S 302
           +
Sbjct: 226 A 226


>gi|15898957|ref|NP_343562.1| SAM-dependent methyltransferase, putative [Sulfolobus solfataricus
           P2]
 gi|284175465|ref|ZP_06389434.1| SAM-dependent methyltransferase, putative [Sulfolobus solfataricus
           98/2]
 gi|13815474|gb|AAK42352.1| SAM-dependent methyltransferase, putative [Sulfolobus solfataricus
           P2]
 gi|261603378|gb|ACX92981.1| Methyltransferase type 11 [Sulfolobus solfataricus 98/2]
          Length = 243

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             ++  +L++ CG G  S  LA    +V  ++I++  +  AR N     + N K +    
Sbjct: 39  YKLEKKVLDIPCGIGRVSYFLANRGYKVTGIDISERMISMARSN-----IQNGKFIVGDM 93

Query: 267 KEFTQAMRRER---EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           ++  + +  E+     N    +  +S       ++  R       V  +    +I+Y
Sbjct: 94  RKIKEIIGNEKYDLVINIYNSLGYYSEEDDLKILESLRDSTRKIVVINLDNRDYIIY 150


>gi|269837011|ref|YP_003319239.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269786274|gb|ACZ38417.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 255

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +LEL CG G   L LAR   +V  ++ +   +  A+  +    V++V++      + + 
Sbjct: 37  VLELGCGTGRLLLPLARAGLQVHGIDSSPAMIARAQARLEDAGVSDVELRTGDMTDLSA 95


>gi|222478986|ref|YP_002565223.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
 gi|222451888|gb|ACM56153.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
          Length = 255

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
             +LE+ CG G F+ +LA     ++ ++I++  +E  R   A   + + V+ VR  +
Sbjct: 47  HRVLEVACGTGRFTTMLADQGAHIVGIDISREMLEQGRQKAAEAGLSDTVEFVRGDA 103


>gi|254459680|ref|ZP_05073096.1| SAM-dependent methyltransferase [Rhodobacterales bacterium
           HTCC2083]
 gi|206676269|gb|EDZ40756.1| SAM-dependent methyltransferase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 398

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 30/150 (20%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             AA      D+L+++   G F L  LA      L V+ + P++  A          +  
Sbjct: 217 AFAARLSEGADVLDVFSHVGGFGLAALAGGAKSALCVDGSAPALALAELGAKDAGFGD-- 274

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG---------- 310
                    T + R+   F+ L+ +     ++  +  DPP      A +           
Sbjct: 275 ---------TMSTRKGDAFDVLEALGKDGAQYDVVICDPPAFAPGKAKLEVGLRAYERLA 325

Query: 311 -----MVQAYPHILYISCNPDSLCRDLSIL 335
                +V+   +++  SC   S   DL   
Sbjct: 326 KMAAPLVKEGGYLVLCSC---SHAADLGKF 352


>gi|255531472|ref|YP_003091844.1| 50S ribosomal protein L11 methyltransferase [Pedobacter heparinus
           DSM 2366]
 gi|255344456|gb|ACU03782.1| ribosomal L11 methyltransferase [Pedobacter heparinus DSM 2366]
          Length = 278

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 51/116 (43%), Gaps = 5/116 (4%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIEN---SFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           I  D+ YV      +     Y  + +   +F   +      M++++L A       +L++
Sbjct: 91  IIADQCYVRATFHQSQPQYKYEIVIDPKMAFGTGHHQTTTMMIQYLLDADVE-DKTVLDM 149

Query: 217 YCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            CG    +++ A+    R++A++  +   ++   N A N++ N++ +  S +   +
Sbjct: 150 GCGTAILAILAAKKGAARLVAIDNDEVCYQSTIENAALNNIRNIEALCGSKEAIPE 205


>gi|218232826|ref|YP_002367614.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus B4264]
 gi|229046593|ref|ZP_04192244.1| Methyltransferase type 11 [Bacillus cereus AH676]
 gi|229110342|ref|ZP_04239914.1| Methyltransferase type 11 [Bacillus cereus Rock1-15]
 gi|218160783|gb|ACK60775.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus B4264]
 gi|228673082|gb|EEL28354.1| Methyltransferase type 11 [Bacillus cereus Rock1-15]
 gi|228724768|gb|EEL76074.1| Methyltransferase type 11 [Bacillus cereus AH676]
          Length = 261

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  ++++   A
Sbjct: 79  AKVFIKQNGHENVSFVAGNAEDLPFA 104


>gi|294785108|ref|ZP_06750396.1| methyltransferase [Fusobacterium sp. 3_1_27]
 gi|294486822|gb|EFG34184.1| methyltransferase [Fusobacterium sp. 3_1_27]
          Length = 383

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 21/133 (15%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR-- 233
            L ++  E             ++E  +   + ++  ++L++  G+G  S+ +A       
Sbjct: 164 GLPFKVSEGVLIP--RADTEILVEQCIQLMREVEEPNILDIGSGSGAISIAIANELKSSS 221

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  ++I + ++E A  N   N + N+  V               + N  + ID   +++ 
Sbjct: 222 VTGIDINEKAIELANENKTLNKIKNINFV---------------KSNLFEKID-KDFKYD 265

Query: 294 TIFVDPPRSGLDD 306
            I  +PP    ++
Sbjct: 266 LIVSNPPYISKNE 278


>gi|239814629|ref|YP_002943539.1| 3-demethylubiquinone-9 3-methyltransferase [Variovorax paradoxus
           S110]
 gi|239801206|gb|ACS18273.1| ubiquinone biosynthesis O-methyltransferase [Variovorax paradoxus
           S110]
          Length = 242

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   LEW+       Q  +L++ CG G  +  +AR    VL +++A  +++ AR + 
Sbjct: 33  HEINPLRLEWIDGIAPISQRRVLDIGCGGGILADSMARKGADVLGIDLASKALKVARLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
                  VK   +S++          +     ++  H     +I 
Sbjct: 93  LEAGTQGVKYREVSAEALAAEQPGSFDVVTCMEMLEHVPEPASIV 137


>gi|15672580|ref|NP_266754.1| protoporphyrinogen oxidase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491064|ref|YP_003353044.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lactococcus lactis subsp. lactis KF147]
 gi|12723493|gb|AAK04696.1|AE006293_2 protoporphyrinogen oxidase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281374822|gb|ADA64342.1| Protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lactococcus lactis subsp. lactis KF147]
 gi|326406099|gb|ADZ63170.1| methylase of polypeptide chain release factor [Lactococcus lactis
           subsp. lactis CV56]
          Length = 270

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 41/189 (21%)

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
             +    + D   +    +   LH  +    ++G A          + D +L V  R LI
Sbjct: 36  LNLMREKITDQELKLLTEVSKRLHQNEPPQYIVGWAE---------FRDLKLKVDERVLI 86

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAV 237
            R                ++E +LA  +     +L++  G+G  ++ L  AR    V A 
Sbjct: 87  PRPE-----------TEELVEMILAENEKDSLKILDIGTGSGAIAISLAQARENWSVKAS 135

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +I+K ++  A  N   N   N++ ++                     +D  +  F  I  
Sbjct: 136 DISKEALTLAAENAEINQA-NLEFIQSDV------------------LDKITDSFDIIVS 176

Query: 298 DPPRSGLDD 306
           +PP    D+
Sbjct: 177 NPPYIAFDE 185


>gi|298208448|ref|YP_003716627.1| putative protoporphyrinogen oxidase [Croceibacter atlanticus
           HTCC2559]
 gi|83848371|gb|EAP86240.1| putative protoporphyrinogen oxidase [Croceibacter atlanticus
           HTCC2559]
          Length = 282

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 29/138 (21%)

Query: 175 GRTLIYRQIENSFTQPNAGIN----------VHMLEWVLAATKGIQGDLLELYCGNGNFS 224
              + Y   E  F   N  +             ++ W++        D+L+L  G+G  +
Sbjct: 68  FEPIQYIIGETEFFDLNFKVTPDVLIPRPETEDLVRWIIQDQHKTNLDVLDLCTGSGCIA 127

Query: 225 LVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           + L+++     V A++I+  ++  A+ N   N+  N+  +                   +
Sbjct: 128 ISLSKYLKDATVSALDISTSALAIAKENAENNN-TNIHFL----------------LKDI 170

Query: 283 KDIDIHSYRFKTIFVDPP 300
              D     +  I  +PP
Sbjct: 171 LASDSLPQHYDVIVSNPP 188


>gi|239628807|ref|ZP_04671838.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518953|gb|EEQ58819.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 499

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 7/116 (6%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL--VL 227
            L     +     I  S    NA +   +              +L+ +CG G   +    
Sbjct: 314 TLKDTRFSYRREVIPTSIKPVNAALTAAL----AKEYMKEDAQVLDPFCGVGTMLIERHK 369

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           A   +    ++I + ++  AR N  A     +  +     +FT     +     + 
Sbjct: 370 AVRANTSYGIDIQEDAILKARENAEAAR-QVIHFINRDFFQFTHDYLFDEVITNMP 424


>gi|222479392|ref|YP_002565629.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
 gi|222452294|gb|ACM56559.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
          Length = 217

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V  A       +L+L  G G  +L LA H +RVLA +I++  +E  R       + NV+ 
Sbjct: 35  VDYADPDSDDVVLDLGAGTGAIALALAPHAERVLARDISEGMMEEGRRKADERGLANVEF 94

Query: 262 VRMSSKE 268
                +E
Sbjct: 95  AYGEFRE 101


>gi|218288924|ref|ZP_03493175.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius LAA1]
 gi|218241013|gb|EED08190.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius LAA1]
          Length = 275

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 24/78 (30%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 + E ++A        +++L  G G  +        RV+ VE        A    
Sbjct: 24  PEAPETVRELLIAYLGHKPDTVIDLGSGTGLSTFPWRHEARRVIGVEPNDDMRAQAERRA 83

Query: 252 AANHVNNVKIVRMSSKEF 269
                +NV  ++  S   
Sbjct: 84  MDLGADNVTFLQGVSTAI 101


>gi|220932115|ref|YP_002509023.1| ribosomal protein L11 methyltransferase [Halothermothrix orenii H
           168]
 gi|219993425|gb|ACL70028.1| ribosomal protein L11 methyltransferase [Halothermothrix orenii H
           168]
          Length = 289

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             + V ++E   +       ++L++ CG G  S+V A      V+ ++  + +++AAR N
Sbjct: 137 TRMCVKLIEKYTSTYN--IKNMLDVGCGTGILSIVGAMLDVKEVVGIDRDRAAIKAAREN 194

Query: 251 IAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDI 285
              N V + V  V   + +           N L  I
Sbjct: 195 ARINGVEDFVNFVLQDASDKVTGNYSLVVANLLPHI 230


>gi|313896637|ref|ZP_07830185.1| ribosomal protein L11 methyltransferase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312974554|gb|EFR40021.1| ribosomal protein L11 methyltransferase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 317

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 17/179 (9%)

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARKYQ 148
           +     L+  LR    ++  L   + +     I H  + D+ W E     ++ +H  K  
Sbjct: 67  LPDDAHLQERLRTLAQRVAALQESAVRVGAGTISHTFMADEDWAETW---KEYVHTEKIG 123

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
            +++ R              E  T     ++      +     A     M    L     
Sbjct: 124 QRIVVRPT-----------WEEYTAKDDEIVIDLDPGAAFGTGAHATTAMCLRALEHLVV 172

Query: 209 IQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               + ++ CG+G  ++  A+     VLA++    +V  A  NI  N V    +V M S
Sbjct: 173 PGTRVYDVGCGSGILAIAAAKLGAGEVLAMDCDPVAVRVAEQNIVQNDVRG-HVVAMES 230


>gi|297160983|gb|ADI10695.1| 3-demethylubiquinone-9 3-methyltransferase protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 282

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVK 260
             A     +G L+++ CG G  +L LA+ F  V+ ++     ++ A    A     +  +
Sbjct: 35  ADALQLDGRGRLIDVGCGPGILALSLAQLFHEVVGLDPDSGMIDEAGREAALAGVADRTR 94

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            VR  ++E             L    + ++     ++D  R  +     GM++    +++
Sbjct: 95  WVRARAEELPAG---------LGTFTVATFGQSFHWMD--RDLVAATIKGMLRPGGALVH 143

Query: 321 IS 322
           IS
Sbjct: 144 IS 145


>gi|269215086|ref|ZP_05987708.2| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria lactamica
           ATCC 23970]
 gi|269208356|gb|EEZ74811.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria lactamica
           ATCC 23970]
          Length = 242

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 38  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
            A N+V +++   +  ++   A     +     ++  H      I  
Sbjct: 98  AALNNVADIEYECIRVEDLAGAEPHSFDAVTCMEMMEHVPDPAAIVC 144


>gi|218281367|ref|ZP_03487845.1| hypothetical protein EUBIFOR_00410 [Eubacterium biforme DSM 3989]
 gi|218217459|gb|EEC90997.1| hypothetical protein EUBIFOR_00410 [Eubacterium biforme DSM 3989]
          Length = 290

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 74/219 (33%), Gaps = 34/219 (15%)

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD- 165
           ++ +  +     V    ++   + W +  +R  D      + I+     NK      R  
Sbjct: 1   MNQIAKEWQDYEVIDTGNKEKLERWNQTILRRPD--PVAIWPIEDERAWNKADAVYHRSK 58

Query: 166 ----------YVDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQ 210
                      V E  T+  + L ++     F           +   M   +  + +   
Sbjct: 59  SGGGHWEMKKPVKEFWTIGYKGLRFKISPTGFKHTGLFPEQASNWDFMANKIKESKRD-D 117

Query: 211 GDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSK 267
             +L L+   G  ++  ++     V+ V+ +K  ++ A+ N+  +++ +  ++ +     
Sbjct: 118 LRILNLFAYTGGATMACSKAGAKEVVHVDASKGMIQWAKENMQLSNLQDHTIRFIVDDCI 177

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           +F +  +R               ++  I +DPP  G   
Sbjct: 178 KFVKREQR------------RGRKYDGIVMDPPSYGRGP 204


>gi|147920321|ref|YP_685908.1| hypothetical protein RCIX1287 [uncultured methanogenic archaeon
           RC-I]
 gi|110621304|emb|CAJ36582.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 266

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 167 VDERLTVAGR-TLIYRQ-IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
            +  +TV       YR  +  +F   N  +     + V +   G +  +L  + G G F+
Sbjct: 80  GEGTVTVHREHGFFYRLDLRETFF--NPRLGEE-RQRVASQVTGRE-RVLMPFAGVGPFA 135

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRRERE 278
           +  A     V A+E    +      N   N V + + I+   + +  + ++   +
Sbjct: 136 IPAAARGATVTAIEKNPAACHLLMENARINKVRDRIAIINGDAFDLGRMLKAVYD 190


>gi|300113601|ref|YP_003760176.1| methyltransferase type 12 [Nitrosococcus watsonii C-113]
 gi|299539538|gb|ADJ27855.1| Methyltransferase type 12 [Nitrosococcus watsonii C-113]
          Length = 356

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 39/75 (52%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           + W+  +       ++E+ CG+G+ +  LA H   V+  +I   +++AA     A  ++N
Sbjct: 54  VPWLKRSLDLSNACVVEIGCGSGSSTAALAHHCREVVGFDIDSGAIKAAEARCQAYGLSN 113

Query: 259 VKIVRMSSKEFTQAM 273
           V++  ++ ++   A+
Sbjct: 114 VRLQSVAPEDLLPAI 128


>gi|193213221|ref|YP_001999174.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Chlorobaculum parvum NCIB 8327]
 gi|193086698|gb|ACF11974.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Chlorobaculum parvum NCIB 8327]
          Length = 294

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 18/112 (16%)

Query: 194 INVHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARY 249
           +  H +E + A+         +L++  G+G  ++ LA      +V A++++  ++E AR 
Sbjct: 106 VLEHAIERLAASGLDSVDTPSILDIGTGSGCIAITLALRLPGAQVTALDVSADALEVARR 165

Query: 250 NIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N   + V + ++ V+  + +   A +                 F  +  +PP
Sbjct: 166 NAEEHGVSDRIRFVQADALDLAFAQKA-------------GGPFDLVISNPP 204


>gi|153813751|ref|ZP_01966419.1| hypothetical protein RUMOBE_04185 [Ruminococcus obeum ATCC 29174]
 gi|149830159|gb|EDM85252.1| hypothetical protein RUMOBE_04185 [Ruminococcus obeum ATCC 29174]
          Length = 796

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                    +  +L++ CG G F+++LA+   +V  +++    ++ AR        +  +
Sbjct: 616 QAQLPDDNKKLRILDVGCGAGFFTILLAKAGHQVTGIDLTPDMIKNARILAQEEGAD-CE 674

Query: 261 IVRMSSK 267
              M ++
Sbjct: 675 FTVMDAE 681



 Score = 39.6 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 26/54 (48%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +L       +  +  +L++  G G F+++LA    +V AV+  +  +  A+ N 
Sbjct: 42  LLGEAFPEREPGEIKILDVGTGPGFFAILLAEAGYQVTAVDYTEEMLREAQQNA 95


>gi|115760355|ref|XP_780350.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115949727|ref|XP_001184504.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 292

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 2/112 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +         +L+L CG G+ SLV A  +    V+ ++ ++ ++   +       + NV+
Sbjct: 99  IEEQMKSGIRILDLGCGRGSASLVFAESYPNSTVVGLDFSQEAINYGKERAKEKGLTNVE 158

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            V   +   ++      ++    D+         I +   R    D    M+
Sbjct: 159 FVCEDAACISEDWNNTIDYIYTNDVIHDLAHADKILLALNRILKPDGVFSMI 210


>gi|113866085|ref|YP_724574.1| SAM-dependent methyltransferase [Ralstonia eutropha H16]
 gi|113524861|emb|CAJ91206.1| SAM-dependent methyltransferase [Ralstonia eutropha H16]
          Length = 296

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 212 DLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L++ CG G+ ++ LAR      R   ++I++P + AAR     N  +    +R  +++
Sbjct: 55  HVLDVGCGTGSTTIALARKLGAQGRCTGIDISEPMLAAARARAQHNG-STASFIRADAQD 113

Query: 269 FTQA 272
           +  A
Sbjct: 114 YAFA 117


>gi|324505112|gb|ADY42202.1| Trimethylguanosine synthase [Ascaris suum]
          Length = 630

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 10/118 (8%)

Query: 196 VHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             M E +       +G L+ + + G G  ++  A     V+A+++    +  A  N    
Sbjct: 432 ERMAEHIADRMVRREGALIIDAFTGVGGNAIQFALKGAFVIAIDLDPVRLRCAARNAQVY 491

Query: 255 H-VNNVKIVRMSSKEFTQAMR--------REREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              + +  +      F ++ R         E+E  R ++     Y    +F+ PP  G
Sbjct: 492 GVADRINFICTDFFHFARSPRVWLPVVEDNEQEAGRSEEGTAEGYPVDAVFLSPPWGG 549


>gi|303244731|ref|ZP_07331061.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanothermococcus okinawensis IH1]
 gi|302484865|gb|EFL47799.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanothermococcus okinawensis IH1]
          Length = 120

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 38/67 (56%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++ CG+G  ++ +AR    V AV+ ++ ++   + N+   ++ N ++++ ++++    
Sbjct: 36  VVDIGCGSGGMTVEMARRCKFVYAVDNSEDAITTTKKNLDKFNIKNCELIKGNAEDVIYN 95

Query: 273 MRREREF 279
           +   + F
Sbjct: 96  LEFNKAF 102


>gi|215486444|ref|YP_002328875.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312966452|ref|ZP_07780674.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli 2362-75]
 gi|215264516|emb|CAS08883.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli O127:H6 str. E2348/69]
 gi|312288905|gb|EFR16803.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli 2362-75]
          Length = 277

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAVALAQRNAQHLT 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|84515722|ref|ZP_01003083.1| N-6 Adenine-specific DNA methylase [Loktanella vestfoldensis SKA53]
 gi|84510164|gb|EAQ06620.1| N-6 Adenine-specific DNA methylase [Loktanella vestfoldensis SKA53]
          Length = 255

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARY 249
           AG++  +L   +AA  G    +LEL CG G  +L L R      +  VE+     + AR 
Sbjct: 30  AGVDPVLLAASIAARAGQS--VLELGCGVGTAALCLGRRVPGLALTGVEVQTEYADLARR 87

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           N AAN +  ++++    +     +R+ R  + + +         T   DP R 
Sbjct: 88  NAAANDLP-LEVITADLRTLPAGLRQRRFDHVIMNPPYFDRDSGTAASDPGRD 139


>gi|238790019|ref|ZP_04633797.1| SAM-dependent methyltransferase [Yersinia frederiksenii ATCC 33641]
 gi|238721832|gb|EEQ13494.1| SAM-dependent methyltransferase [Yersinia frederiksenii ATCC 33641]
          Length = 280

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            I    ++W +         +L+L CG G +S +LA+       V+ +  S+E AR    
Sbjct: 50  AIIEQQVDW-ITQQLPANARVLDLGCGPGFYSQLLAQRGFHCTGVDFSPASIEYARQQSL 108

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           A  + N++  +   +E+T A   +       +I++
Sbjct: 109 AAGL-NIEYQQQDVREYTPAQPFDFIMMTFGEINV 142


>gi|301017244|ref|ZP_07182025.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 69-1]
 gi|300400375|gb|EFJ83913.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 69-1]
          Length = 277

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAVALAQRNAQNLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|291533344|emb|CBL06457.1| SAM-dependent methyltransferase [Megamonas hypermegale ART12/1]
          Length = 308

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G F+L  A      V AV+I++ +V+    NI  N ++
Sbjct: 221 YNRRAVAHLAKGRKVLDCFTHTGAFALNAASGGALSVTAVDISQEAVDMTTKNIEMNGLD 280

Query: 258 NVKIVRMSSKEFTQAMRRER 277
           N K ++         +  E+
Sbjct: 281 NAKAIKADVFNLLTKLIEEK 300


>gi|242062254|ref|XP_002452416.1| hypothetical protein SORBIDRAFT_04g025390 [Sorghum bicolor]
 gi|241932247|gb|EES05392.1| hypothetical protein SORBIDRAFT_04g025390 [Sorghum bicolor]
          Length = 465

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSK 267
           +GD++ +++ G G F++  A+    V A ++   SV   R N   N V++      M ++
Sbjct: 198 KGDVICDMFAGIGPFAIPAAQKGCVVYANDLNPDSVHYLRTNAKINKVDDYIFAYNMDAR 257

Query: 268 EFTQAMRREREFNRLKDIDIHS 289
            F Q +          D  + +
Sbjct: 258 VFMQNLMTVPGLETGSDCQVAA 279


>gi|167769486|ref|ZP_02441539.1| hypothetical protein ANACOL_00820 [Anaerotruncus colihominis DSM
           17241]
 gi|167668454|gb|EDS12584.1| hypothetical protein ANACOL_00820 [Anaerotruncus colihominis DSM
           17241]
          Length = 306

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 83/283 (29%), Gaps = 50/283 (17%)

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           L + + L      A++ L      + A     +R R       Y +Q      +      
Sbjct: 50  LIEQELLERDRTHAVIHLYISPDENPAEAVSFLRERFDAAGISYTVQTDLVDEEDWATAW 109

Query: 164 RDY-----VDERLTVAGRTLIYRQIEN----------SFTQPNAGINVHMLEWVLAATKG 208
           + Y     + ERL +      Y               +F          +   +L     
Sbjct: 110 KKYYFPTKIGERLVICPSWESYAPAPGETVLTMDPGMAFG-TGTHETTRLCIQLLEEAVT 168

Query: 209 IQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266
              DLL++  G+G  ++  L       + V+I + +V  AR N  AN V    + +    
Sbjct: 169 PGMDLLDIGTGSGILAIAALLFGARAAVGVDIDEVAVRVARENAKANGVGGRARFIAGDL 228

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPD 326
                 +      N + D+ I        F+     G      G++ A            
Sbjct: 229 AAKVDGVFPVVTANIVADVIIRLIPDLGRFLT---EGGAFIASGIIDARE---------- 275

Query: 327 SLCRDL--SILSTTHTIERLALFDQFPYTRHMEC---GVLLVR 364
              RD+  ++ +  + +E+             E      LL R
Sbjct: 276 ---RDVTSALEAAGYRVEK-----------RCESGGWVALLAR 304


>gi|103486883|ref|YP_616444.1| SAM-dependent methyltransferase [Sphingopyxis alaskensis RB2256]
 gi|98976960|gb|ABF53111.1| SAM-dependent methyltransferase [Sphingopyxis alaskensis RB2256]
          Length = 252

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 17/123 (13%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            F    A +   + E +           L L+   G  S  LA     V  V+ +K SV 
Sbjct: 61  GFFPDMAPVWDWLRERIADRPDPA---FLNLFGYTGVGSQALAAAGASVTHVDASKKSVA 117

Query: 246 AARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            AR N A   + +  V+ +   + +FT    R               R+  I +DPP+ G
Sbjct: 118 QARDNAALAGMADKPVRWLVDDAGKFTAREVR------------RGRRYDAILLDPPKFG 165

Query: 304 LDD 306
              
Sbjct: 166 RGP 168


>gi|312138483|ref|YP_004005819.1| sam dependent methyltransferase [Rhodococcus equi 103S]
 gi|311887822|emb|CBH47134.1| putative SAM dependent methyltransferase [Rhodococcus equi 103S]
          Length = 237

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A    H+L+  +A         L+L CG G+ S+ LA+    V AV+    ++E AR  +
Sbjct: 61  AEQLNHLLD-AVAVPGEAAARALDLGCGTGDHSIELAKRGWSVTAVDSVPLAIERARAKL 119

Query: 252 AANHVNNVKIVRMSSKEF 269
                + V+ V       
Sbjct: 120 PVAGAD-VRFVLGDVTHL 136


>gi|293375381|ref|ZP_06621662.1| methyltransferase small domain protein [Turicibacter sanguinis
           PC909]
 gi|325844450|ref|ZP_08168177.1| methyltransferase small domain protein [Turicibacter sp. HGF1]
 gi|292645934|gb|EFF63963.1| methyltransferase small domain protein [Turicibacter sanguinis
           PC909]
 gi|325489124|gb|EGC91508.1| methyltransferase small domain protein [Turicibacter sp. HGF1]
          Length = 197

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 20/115 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A   I G++L++ CG G   L LA+ +    V  V++ + ++E A+ N   N V NV I 
Sbjct: 52  AEPEISGNILDVGCGYGPIGLSLAKSYPNRNVHMVDVNQRALELAKKNAMNNGVENVMIY 111

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                E                      RF  I  +PP          +++    
Sbjct: 112 ESHCYEGVDD------------------RFAAILSNPPIRAGKKVVHAIIEEAKE 148


>gi|242040693|ref|XP_002467741.1| hypothetical protein SORBIDRAFT_01g033250 [Sorghum bicolor]
 gi|241921595|gb|EER94739.1| hypothetical protein SORBIDRAFT_01g033250 [Sorghum bicolor]
          Length = 690

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            G +++ + G G  ++  A     V+AV+I    ++ A +N +   V +++  +      
Sbjct: 530 AGVIIDCFTGVGGNAIQFATKCKHVIAVDIDPQKIDCAHHNASIYGVNDHIDFIVGDFIH 589

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKT 294
               ++ E  F           +   
Sbjct: 590 IAPHLKGETAFMSPPWGGPDYAKVDV 615


>gi|114326963|ref|YP_744120.1| SAM-dependent methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315137|gb|ABI61197.1| SAM-dependent methyltransferase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 261

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 29/73 (39%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M+  + A        +L++ CG G  +  +A     V  +++ +  +  AR    A  +
Sbjct: 41  AMVRTLAACALTPASRVLDVACGPGILACAMAEQAQHVSGIDLTEAMIGQARRRQNAAGL 100

Query: 257 NNVKIVRMSSKEF 269
           +N++     +   
Sbjct: 101 HNLEWHVGHAGSL 113


>gi|222444994|ref|ZP_03607509.1| hypothetical protein METSMIALI_00610 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434559|gb|EEE41724.1| hypothetical protein METSMIALI_00610 [Methanobrevibacter smithii
           DSM 2375]
          Length = 272

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 29/63 (46%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                LL+L CG G+ +L +A+   +V  V+ +   +E         ++ NV  +  S +
Sbjct: 58  NENDSLLDLGCGEGSITLPIAKQVRKVTGVDSSTKMLELLNQRAQEQNIKNVDTILKSLE 117

Query: 268 EFT 270
           + +
Sbjct: 118 DIS 120


>gi|168211815|ref|ZP_02637440.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170710232|gb|EDT22414.1| conserved hypothetical protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 256

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 33/160 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           A    +  +L+L  G G    ++   ++   V+ +EI +   E A  +   N++ + V  
Sbjct: 49  ANVNRKHSVLDLCTGTGIIPFIIYGKKNPKEVVGIEIQEEFAEMANRSAKINNIEDKVSF 108

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPH 317
           V    K+        +E N+L        +F  + V+PP    +   V     +  A   
Sbjct: 109 VCGDLKD--------KELNKLMP------KFDVVTVNPPYKLNNAGIVNPEDKLAIARHE 154

Query: 318 ILYISCN-----PDS--LCRDLSILSTTHTIERLALFDQF 350
           I+   CN       S    +D   L   H  ERLA  D F
Sbjct: 155 IM---CNLEDVIAASRRFLKDNGRLYMVHRPERLA--DIF 189


>gi|466533|dbj|BAA05915.1| possibly protoporphyrinogen oxidase [Escherichia coli]
          Length = 225

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMS 265
           + N+ I++  
Sbjct: 158 IKNIHILQSD 167


>gi|255020677|ref|ZP_05292739.1| protoporphyrinogen oxidase [Acidithiobacillus caldus ATCC 51756]
 gi|254969913|gb|EET27413.1| protoporphyrinogen oxidase [Acidithiobacillus caldus ATCC 51756]
          Length = 290

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
              +++  L       +  +L+L  G+G  +L LAR      +  V+++  ++  AR N 
Sbjct: 103 TEVLVQAALERMPLYGRQKVLDLGTGSGAIALALARSRPTAEITGVDLSSDALALARANA 162

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            A  +                   + +            RF  I  +PP    DD  +  
Sbjct: 163 KALGL-----------------VVDWQQGHWCRALAPGQRFDLIVSNPPYLAADDPHLAE 205

Query: 312 VQAYPHILYI 321
           +Q  P +  +
Sbjct: 206 LQHEPALALV 215


>gi|256380140|ref|YP_003103800.1| modification methylase, HemK family [Actinosynnema mirum DSM 43827]
 gi|255924443|gb|ACU39954.1| modification methylase, HemK family [Actinosynnema mirum DSM 43827]
          Length = 288

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 13/109 (11%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
              ++EW L A +G  +  +++L  G+G  +L +A H     V AVE    ++  AR N 
Sbjct: 98  TELLVEWALNAVRGAARPVVVDLCTGSGALALSIAHHRPDAVVHAVEKDPTALSWARRNA 157

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A        +R+   + T           L D+D        +  +PP
Sbjct: 158 DARSAAGDTPIRLHHGDVTA-------PGVLSDLD---GAVDLVVCNPP 196


>gi|218508003|ref|ZP_03505881.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli
           Brasil 5]
          Length = 248

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 16/206 (7%)

Query: 15  AEKVDRLRQMMLAFQVPNL--QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           A K   +   + +  +     +I  + P   R R  F       ++       ++   + 
Sbjct: 57  AFKRQLVVDALKSKGLTREVGEIVPARP-GERRRVVFAARKTEKEMLIGFNQAESHHIVA 115

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I+     S  I A +  + A I       A+ F++  L + S   +      +L D   R
Sbjct: 116 IEECPISSAGIVARLPAIKA-IAASLATNAEPFRVAVLETLSGLDLAIDEIKKLSDPQRR 174

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           +    +       +  +         K  +D   V+                  F Q   
Sbjct: 175 KAIETVLGLRGIARVTLNGEILVEPAKPIIDFGGVE-----------VSPPAGGFAQATK 223

Query: 193 GINVHMLEWVLAATKGIQGDLLELYC 218
                M E VLA   G    + +L+ 
Sbjct: 224 PAEEAMAELVLA-HIGKAKRIADLFA 248


>gi|170289865|ref|YP_001736681.1| methyltransferase type 11 [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173945|gb|ACB06998.1| Methyltransferase type 11 [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 273

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +  +L       G +LE +CGNG  ++ LA     VL  +I+ P ++ AR     + V++
Sbjct: 43  IAEILRENGLESGRVLEAFCGNGRVAIPLAIEGYDVLGFDISLPFIQDARQKAEKHRVSD 102

Query: 259 -VKIVRMSSKEFTQAMRRE 276
             K +   ++E    ++ E
Sbjct: 103 KAKFIVSDAREIDSRLKGE 121


>gi|145275187|ref|NP_065861.2| tRNA (guanine-N(1)-)-methyltransferase [Homo sapiens]
 gi|145559536|sp|Q32P41|TRMT5_HUMAN RecName: Full=tRNA (guanine-N(1)-)-methyltransferase; AltName:
           Full=M1G-methyltransferase; AltName: Full=tRNA [GM37]
           methyltransferase; AltName: Full=tRNA methyltransferase
           5; Short=TRM5
          Length = 509

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 97/273 (35%), Gaps = 24/273 (8%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + +F   +  K  + +   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 143 YKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTS--GF 200

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT---- 172
           + +  I H  L D        +   +  +   I            + R++  E L+    
Sbjct: 201 SRIGHIAHLNLRDHQLSFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQN 260

Query: 173 ----VAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
               V      Y   E  F++   N  ++    E          GD+L +++ G G F++
Sbjct: 261 MMTKVRENNYTY---EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAI 314

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKD 284
            +A+    V A ++   S +   YN   N V+  VK+  +  K+F Q   +E     L  
Sbjct: 315 PVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGL 374

Query: 285 IDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP 316
                     +   P ++     A   ++   P
Sbjct: 375 SKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQP 407


>gi|298247281|ref|ZP_06971086.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297549940|gb|EFH83806.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 271

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N       ++ +L      + ++L+L CG G     LA     +  ++  K  +E     
Sbjct: 33  NPAAE---VDRLLDQYAMPESNVLDLGCGAGQTLCRLAPKVKHIWGLDQNKEMLEVTGLR 89

Query: 251 IAANHVNNVKIVRMS 265
                + NV  V  S
Sbjct: 90  AERLGLKNVTTVHGS 104


>gi|288554406|ref|YP_003426341.1| modification methylase, HemK family protein [Bacillus pseudofirmus
           OF4]
 gi|288545566|gb|ADC49449.1| modification methylase, HemK family protein [Bacillus pseudofirmus
           OF4]
          Length = 293

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 28/131 (21%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFD--RVL 235
            Q N  +         ++E VL   + + GD    +L++  G+G   + LA      +V 
Sbjct: 90  FQVNGDVLIPRPETEELIEHVLHLKQSLWGDASVDVLDVGAGSGAIGVTLALECAEMKVE 149

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AV+I+K ++E AR N                 E   A     E + L        RF  I
Sbjct: 150 AVDISKEALEIARLNA----------------ETLDAKMSFFESDLLSTPIQMEKRFDII 193

Query: 296 FVDPPRSGLDD 306
             +PP   L +
Sbjct: 194 VSNPPYIPLGE 204


>gi|302868460|ref|YP_003837097.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302571319|gb|ADL47521.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 294

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 12/117 (10%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIA 252
             ++E V          +L++ CG+G      A       RV+ ++IA   VE AR   A
Sbjct: 40  RRLVERVA---PAPGHRVLDVGCGSGACLFPAAARVGPAGRVVGIDIAAGMVETARAEAA 96

Query: 253 ANHVNNVKIVRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              V NV+   M  +           +        L D+     R+  + V   R G
Sbjct: 97  RRGVGNVEARVMDGERVDFPAASFDVVIGSYSLIFLPDVRSALRRYAQVLVPGGRIG 153


>gi|269957065|ref|YP_003326854.1| methyltransferase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305746|gb|ACZ31296.1| methyltransferase [Xylanimonas cellulosilytica DSM 15894]
          Length = 184

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 20/124 (16%)

Query: 211 GDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
             +L+LY G+G   L  A      V  V+ A+ +VE A+ N+A   +   V++V   +  
Sbjct: 41  ARVLDLYAGSGALGLEAASRGAVGVTLVDSARGAVEVAKRNVATLGLGGTVRVVGDDAGR 100

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328
           F   +                     +F+DPP    + A  G++ +        C P  L
Sbjct: 101 FAAGLA-----------TAPGEPLDLVFLDPPYDLSEAALGGVLASL-------CAPGVL 142

Query: 329 CRDL 332
             D 
Sbjct: 143 APDA 146


>gi|302343651|ref|YP_003808180.1| hypothetical protein Deba_2222 [Desulfarculus baarsii DSM 2075]
 gi|301640264|gb|ADK85586.1| hypothetical protein Deba_2222 [Desulfarculus baarsii DSM 2075]
          Length = 185

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 19/123 (15%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN- 250
                 ++  +        G  LEL CG G  +  LAR   +VLAV+     +  AR N 
Sbjct: 22  PEAARRLIARL------PPGRALELCCGVGGLTRFLARD-RQVLAVDGDPERLALARANV 74

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIH-------SYRFKTIFVDPPR 301
            A      V  +    +    A+       RL   D D         ++      + PP 
Sbjct: 75  AAMGGATGVDFLCCDLER--PAITPRPGLFRLAILDPDWAPAGQPPNAWTDDLAQMRPPA 132

Query: 302 SGL 304
             L
Sbjct: 133 DAL 135


>gi|120611480|ref|YP_971158.1| type 11 methyltransferase [Acidovorax citrulli AAC00-1]
 gi|120589944|gb|ABM33384.1| Methyltransferase type 11 [Acidovorax citrulli AAC00-1]
          Length = 236

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+            +LE+  G+G  + +LA   + V+ +EI    VE AR N+
Sbjct: 83  PRVEARLLQ---DLQVKPTDRVLEIGAGSGYMAALLAHRAEHVVTLEIVPDLVEFARENL 139

Query: 252 AANHVNNVKIVRMS 265
            +  ++NV + +  
Sbjct: 140 LSAGIDNVAVRQGD 153


>gi|260911190|ref|ZP_05917793.1| ribosomal protein L11 methyltransferase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634670|gb|EEX52757.1| ribosomal protein L11 methyltransferase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 289

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 17/124 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M+   L         LL+  CG G   +V ++   + VL  +I + SV+ + +N   
Sbjct: 137 TTQMVVAQLLGMPLQGKRLLDCGCGTGILGIVASKLGAESVLGYDIDEWSVDNSLHNAML 196

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N V N+ + +  +   T                     F  +  +  R+ L       VQ
Sbjct: 197 NGVANMVVRKGDATSLTAG----------------DGPFDVVVANINRNILLADLPRWVQ 240

Query: 314 AYPH 317
           A   
Sbjct: 241 AMAK 244


>gi|167463934|ref|ZP_02329023.1| hypothetical protein Plarl_15464 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322384791|ref|ZP_08058453.1| hypothetical protein PL1_0692 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150362|gb|EFX43863.1| hypothetical protein PL1_0692 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 288

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 22/148 (14%)

Query: 167 VDERLTV-AGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGN 220
           + ER TV     L +      F           +   M+  +  A + ++  +L L+   
Sbjct: 70  LPERWTVSYDNKLRFHIKPTGFKHTGLFPEQAANWDWMIHKIQQAERPVK--VLNLFAYT 127

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRRERE 278
           G  S+  A     V+ V+ +K  V+ A+ N   + +   +V+ +     +F Q  +R   
Sbjct: 128 GGASVACAYAGASVVHVDASKGVVQWAKENQQLSGLGDRHVRFITDDVFKFVQREQR--- 184

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                       ++  I +DPP  G   
Sbjct: 185 ---------RGNQYDAIIMDPPSYGRGP 203


>gi|89073063|ref|ZP_01159610.1| putative SAM-dependent methyltransferase [Photobacterium sp. SKA34]
 gi|89051281|gb|EAR56737.1| putative SAM-dependent methyltransferase [Photobacterium sp. SKA34]
          Length = 396

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH--VNNVKIVRMSSK 267
             +L  +C  G F L  L      V+ V++++ +++ A  N   N   V N + +     
Sbjct: 222 KRVLNCFCYTGGFGLYALKGGAKEVVNVDVSQHALDTALQNAQDNGFPVENAQFLNADVF 281

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +  +  R   E             F  + +DPP+        VG  + Y  I
Sbjct: 282 KLLREYRDRGEL------------FDVVIMDPPKFAESKSQLVGACRGYKDI 321


>gi|307291612|ref|ZP_07571488.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0411]
 gi|306497373|gb|EFM66914.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0411]
          Length = 198

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 1/129 (0%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPAGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA    R V  V++ + +V  A+ N   N +  V  V  +  E T A        
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDNVYETLNETTYAAIVSNPPI 131

Query: 281 RLKDIDIHS 289
           R     +H 
Sbjct: 132 RAGKKVVHG 140


>gi|260774827|ref|ZP_05883729.1| ribosomal RNA small subunit methyltransferase D [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609252|gb|EEX35407.1| ribosomal RNA small subunit methyltransferase D [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 199

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G       +R  D V  +E+   +      NIA
Sbjct: 46  VKETLFNWLAQDVP--QAKCLDLFAGSGGLGFEAASRQADNVTMIELNPNAFNQLEKNIA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           A + +N+  +   +  F Q                       +F+DPP R GL + TV +
Sbjct: 104 ALNSDNLTAINSDALSFLQQ---------------AGTPHHVVFIDPPFRKGLLEQTVTL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LESNGWLAKDAMIYI 163


>gi|258588227|pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With
           Adomet
          Length = 272

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 13/156 (8%)

Query: 119 VTLIYHRLLDDAWRECAIRLR-DALHARKYQIQLIGRANKTKICLDRDY--VDERLTVAG 175
           V ++   L +D  RE   R +  A+     QI    R    KI   ++   + +      
Sbjct: 34  VVIVKKELSEDEIREIVKRTKCKAILLYTTQITGEFRTPHVKILYGKETETIHKEYGCLF 93

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-- 233
           +  + + +   ++Q N      M     A        +++++ G G F++ LA++     
Sbjct: 94  KLDVAKIM---WSQGNIEERKRM-----AFISNENEVVVDMFAGIGYFTIPLAKYSKPKL 145

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           V A+E    +      NI  N +NNV  +   +++ 
Sbjct: 146 VYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV 181


>gi|261368081|ref|ZP_05980964.1| SAM-dependent methyltransferase [Subdoligranulum variabile DSM
           15176]
 gi|282570071|gb|EFB75606.1| SAM-dependent methyltransferase [Subdoligranulum variabile DSM
           15176]
          Length = 287

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 32/179 (17%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGI-NVHMLEWVLA----ATKGIQGDLLELYCGNG 221
           + ++  +  + L        F   + G+     + W          G    +L L+   G
Sbjct: 70  LPQKWQIHWQDLTLIVSPTGFK--HTGVFPEQAVNWAWYQEKIRQAGRPIKVLNLFGYTG 127

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREF 279
             +L        V  V+ +K  V  AR N AA+H+ +   + +     +F Q     RE 
Sbjct: 128 GATLACLAAGASVTHVDASKGMVAWARENAAASHLADRPCRWIVDDCAKFVQ-----REI 182

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSG---------LDDATVGMVQAYPHILYISCNPDSLC 329
            R         ++  + +DPP  G         L+D    ++     +L  S +P    
Sbjct: 183 RR-------GNKYDGVIMDPPSYGRGPGGEIWKLEDNVYDLIALTEQVL--SDDPLFFA 232


>gi|116749149|ref|YP_845836.1| HemK family modification methylase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698213|gb|ABK17401.1| modification methylase, HemK family [Syntrophobacter fumaroxidans
           MPOB]
          Length = 288

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L    G +  +L++  G+G  ++ LA  R    V+A + +  ++E AR N  
Sbjct: 102 TEVLVEKALELLPGTRARVLDIGTGSGAIAVSLATERKDLTVVATDRSPGALEIARRNAV 161

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            + V +   V +++ +   A         L  +    Y     F   PR   +   V  +
Sbjct: 162 RHKVED--RVWLAAMDLFSAFLPAVPVFDLI-VANPPYIGDFEFAALPREIAEHEPVEAL 218

Query: 313 QA 314
           + 
Sbjct: 219 RG 220


>gi|330883391|gb|EGH17540.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 190

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 53/182 (29%), Gaps = 46/182 (25%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 15  RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 74

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 75  MTCIEGDV------------FEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEGAYRR 122

Query: 304 LDDATVGMVQAYPHILYISCNPD-----------SLC----RDLSILSTTHTIERLALFD 348
           L++  + ++     ++  SC+             +      R++ +L            D
Sbjct: 123 LNEQAMRLLSKDGILVSASCSMHLPEDDLQNVLLTSARHLDRNIQLLERGGQ--GADALD 180

Query: 349 QF 350
           QF
Sbjct: 181 QF 182


>gi|330838434|ref|YP_004413014.1| Ribosomal protein L11 methyltransferase [Selenomonas sputigena ATCC
           35185]
 gi|329746198|gb|AEB99554.1| Ribosomal protein L11 methyltransferase [Selenomonas sputigena ATCC
           35185]
          Length = 313

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 79/239 (33%), Gaps = 32/239 (13%)

Query: 71  MRIDYFMPGSLLINALMIEMMAT-------IRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           + +D     + L++ ++ E+ A          L   +R+ L+    L    +  +V +  
Sbjct: 6   VSVDTSHEATDLVSEILQELGAAGVVIEDPALLNEYIRSGLWDYTDLKESEETEVVRVKA 65

Query: 124 HRLLDDAWRECAIRLRDALHA-RKYQIQLIGRANKTKICLDRDYVD-------------- 168
           +  LD+        L + L +  ++ I     A   K   D D+ +              
Sbjct: 66  YWALDEELEGKLQNLSERLASLAQHGIDKGAGAVSWKAVADEDWAETWKEFFHTEKIGAR 125

Query: 169 -------ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
                  E        ++      +           +    L         + ++  G+G
Sbjct: 126 TVIKPTWEEYEAEAGEIVAELDPGAAFGTGQHATTSLCIRALEDLVRPGMTVFDVGTGSG 185

Query: 222 NFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
             ++V A+    RV AV+    +V  AR N+  N   +V  VR    +  +++  E + 
Sbjct: 186 VLAIVAAKLGAKRVEAVDFDPVAVRVARENVRQNGAEDV--VRTERSDLLKSVAGEADL 242


>gi|309812205|ref|ZP_07705963.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dermacoccus sp. Ellin185]
 gi|308433892|gb|EFP57766.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dermacoccus sp. Ellin185]
          Length = 483

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 23/150 (15%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL-ARHFD 232
             R+L  R     F          ML           G +++L  G+G  +L + A   D
Sbjct: 81  PFRSLELRVGPGVFV---PRPETEMLVDAALEAAPHGGRIVDLCTGSGAIALAIKAERPD 137

Query: 233 -RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V AVE+++ +   A  N     +     V +S ++  QA+                  
Sbjct: 138 LEVYAVELSEEAAAWAALNCKQIGLT----VNLSVEDARQALPELE------------GS 181

Query: 292 FKTIFVDPPR--SGLDDATVGMVQAYPHIL 319
           F  +  +PP   +G+      + +  P I 
Sbjct: 182 FDVVVSNPPYVPTGMVPIDPEVAEHDPEIA 211


>gi|228963094|ref|ZP_04124274.1| Methyltransferase type 11 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228796596|gb|EEM44025.1| Methyltransferase type 11 [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 261

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  ++++   A
Sbjct: 79  AKIFIKQNGHENVSFVAGNAEDLPFA 104


>gi|212637945|ref|YP_002314465.1| 16S RNA G1207 methylase RsmC [Anoxybacillus flavithermus WK1]
 gi|212559425|gb|ACJ32480.1| 16S RNA G1207 methylase RsmC [Anoxybacillus flavithermus WK1]
          Length = 202

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
             + G +L++ CG G   L LA+ F    V  +++ + ++E A+ N   N + NV+I 
Sbjct: 59  PNVSGSILDVGCGYGPIGLALAKDFPHRMVHMIDVNERAIELAKKNKQQNDIENVRIY 116


>gi|194364468|ref|YP_002027078.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Stenotrophomonas maltophilia R551-3]
 gi|194347272|gb|ACF50395.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Stenotrophomonas maltophilia R551-3]
          Length = 285

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 18/120 (15%)

Query: 195 NVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L    +     L +L  G+G  +L LA  R   +VLA + +  ++  A  N 
Sbjct: 100 TELLVELALERLPQDRALQLADLGTGSGAIALALASERPQAQVLATDASPGALTVAARNA 159

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A + + NV+        +                 +   RF  I  +PP    DD  +  
Sbjct: 160 ARHELGNVRFAEGGHDWYAP---------------LQGARFDLIASNPPYIASDDPHLEQ 204


>gi|110598639|ref|ZP_01386905.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase:UbiE/COQ5
           methyltransferase [Chlorobium ferrooxidans DSM 13031]
 gi|110339751|gb|EAT58260.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase:UbiE/COQ5
           methyltransferase [Chlorobium ferrooxidans DSM 13031]
          Length = 275

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN 258
           V  A       +L+L  G G  + + +       RV+ V++    +E AR N   N   N
Sbjct: 69  VALAVMKEGDVVLDLGSGAGVDAFLASNKVGERGRVIGVDMTPEMIERARVNARNNGYRN 128

Query: 259 VKIVRMSSKEF 269
           V+  +   +  
Sbjct: 129 VEFRQGEIENL 139


>gi|189346615|ref|YP_001943144.1| hypothetical protein Clim_1096 [Chlorobium limicola DSM 245]
 gi|189340762|gb|ACD90165.1| Protein of unknown function methylase putative [Chlorobium limicola
           DSM 245]
          Length = 393

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            D+L+++  +G F+L  L       + V+I++ +++ A  N   N   N  +V   + + 
Sbjct: 220 ADVLDVFTNDGGFALNALRGGARSAIMVDISEETLKRAEKNAVLNGFENFSLVASDAFDM 279

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
              M   +E             F  + +DPP            ++AY  +
Sbjct: 280 LGKMVEAKEL------------FDVVVLDPPSFTKSRKNLPTALKAYKRL 317


>gi|310643061|ref|YP_003947819.1| sam-dependent methyltransferase [Paenibacillus polymyxa SC2]
 gi|309248012|gb|ADO57579.1| Predicted SAM-dependent methyltransferase [Paenibacillus polymyxa
           SC2]
          Length = 459

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 12/122 (9%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
            V+         +LE +   G+F+L        +V  ++I++ ++E+AR N+  N   + 
Sbjct: 249 KVVEFPFWDGATVLECFSHTGSFTLNACKHGAKKVTCLDISEHAIESARDNVKLNGFEDR 308

Query: 259 VKIVRMSSKEFTQ---AMRREREFNRLKDIDIH-------SYRFKTIFVDPPRSGLDDAT 308
           V+ V   + ++ +       ER        D            F  + +DPP      + 
Sbjct: 309 VEFVVDDAFQYLRNQVKGVEERTARAGGKGDTSKPLTAGGGRTFDVVILDPPAFAKTKSA 368

Query: 309 VG 310
           V 
Sbjct: 369 VK 370


>gi|307685573|dbj|BAJ20717.1| TRM5 tRNA methyltransferase 5 homolog [synthetic construct]
          Length = 509

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 97/273 (35%), Gaps = 24/273 (8%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + +F   +  K  + +   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 143 YKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTS--GF 200

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT---- 172
           + +  I H  L D        +   +  +   I            + R++  E L+    
Sbjct: 201 SRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQN 260

Query: 173 ----VAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
               V      Y   E  F++   N  ++    E          GD+L +++ G G F++
Sbjct: 261 MMTKVRENNYTY---EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAI 314

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKD 284
            +A+    V A ++   S +   YN   N V+  VK+  +  K+F Q   +E     L  
Sbjct: 315 PVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGL 374

Query: 285 IDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP 316
                     +   P ++     A   ++   P
Sbjct: 375 SKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQP 407


>gi|197121242|ref|YP_002133193.1| methyltransferase small [Anaeromyxobacter sp. K]
 gi|196171091|gb|ACG72064.1| methyltransferase small [Anaeromyxobacter sp. K]
          Length = 382

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 1/114 (0%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++    A          ++  G G  ++VLAR   RV+A ++   +V  AR N A   + 
Sbjct: 193 LVASAAAERPLDGQRAFDVGTGTGVLAMVLARAGARVIATDLEPRAVACARENAARLGLA 252

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             ++  + +  F + +      N            +    DP  + L+    G+
Sbjct: 253 G-QVEVVEADLFPEGLADVVVCNPPWIPGPAHGPLERAVYDPGGAFLERLVRGL 305


>gi|88604419|ref|YP_504597.1| hypothetical protein Mhun_3196 [Methanospirillum hungatei JF-1]
 gi|88189881|gb|ABD42878.1| methyltransferase [Methanospirillum hungatei JF-1]
          Length = 265

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMR 274
            + G G +++ +A     VLA+EI K +      N   N V + + I+R  + +  Q +R
Sbjct: 127 PFAGVGPYAIPVAARGAEVLAIEINKSACSWMTINALENGVSSRLHIIRGDAMQANQTLR 186

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           R+     +                    G
Sbjct: 187 RKFSRIIIPTPYGLLNGPDIFLSMLSEGG 215


>gi|80478626|gb|AAI08285.1| TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) [Homo
           sapiens]
 gi|119601198|gb|EAW80792.1| TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) [Homo
           sapiens]
 gi|187950393|gb|AAI36608.1| TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) [Homo
           sapiens]
 gi|187953289|gb|AAI36607.1| TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) [Homo
           sapiens]
 gi|194375516|dbj|BAG56703.1| unnamed protein product [Homo sapiens]
          Length = 509

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 97/273 (35%), Gaps = 24/273 (8%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + +F   +  K  + +   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 143 YKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYEHFKSEEILRAVLPEGQDVTS--GF 200

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT---- 172
           + +  I H  L D        +   +  +   I            + R++  E L+    
Sbjct: 201 SRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQN 260

Query: 173 ----VAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
               V      Y   E  F++   N  ++    E          GD+L +++ G G F++
Sbjct: 261 MMTKVRENNYTY---EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAI 314

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKD 284
            +A+    V A ++   S +   YN   N V+  VK+  +  K+F Q   +E     L  
Sbjct: 315 PVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGL 374

Query: 285 IDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP 316
                     +   P ++     A   ++   P
Sbjct: 375 SKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQP 407


>gi|303240625|ref|ZP_07327140.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2]
 gi|302591862|gb|EFL61595.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2]
          Length = 226

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--SVEAARYNIAANHVNNV 259
           ++ +    +  +L++ CG+GN S++L+++F+ V+ ++I+     +   + N     + N+
Sbjct: 31  LVKSMPNKRNQVLDIGCGSGNKSILLSKYFEHVIGIDISDSFLQIAEHKKNAK--GIKNI 88

Query: 260 KIVRMSSKE 268
           + + M +++
Sbjct: 89  QFINMDAEK 97


>gi|316932583|ref|YP_004107565.1| methyltransferase small [Rhodopseudomonas palustris DX-1]
 gi|315600297|gb|ADU42832.1| methyltransferase small [Rhodopseudomonas palustris DX-1]
          Length = 259

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 8/121 (6%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNV 259
             +        ++E   G G   L LAR  D +  + VEI    V  AR N   N +   
Sbjct: 41  AASTRARAGDRVVEFGAGVGTAGLALARRVDGIAPVLVEIDSTLVAIARDNARLNGLA-A 99

Query: 260 KIVRMS----SKEFTQAMRREREFN-RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           ++V +     ++ F  A       +  L +   H         DP R     AT   ++A
Sbjct: 100 EVVCLDVTGPAETFAAAGLGPDTADTVLMNPPFHDAARHRGSPDPLRQAAHLATGATLEA 159

Query: 315 Y 315
           +
Sbjct: 160 W 160


>gi|257081465|ref|ZP_05575826.1| methyltransferase small [Enterococcus faecalis E1Sol]
 gi|256989495|gb|EEU76797.1| methyltransferase small [Enterococcus faecalis E1Sol]
          Length = 202

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPSGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA    R V  V++ + +V  A+ N   N +  V I   +  E            
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYE------------ 119

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 ++   +  I  +PP         G++  
Sbjct: 120 -----TLNETTYAAIVSNPPIRAGKKVVHGILTG 148


>gi|256960699|ref|ZP_05564870.1| methyltransferase small [Enterococcus faecalis Merz96]
 gi|293384758|ref|ZP_06630610.1| methyltransferase domain protein [Enterococcus faecalis R712]
 gi|293388025|ref|ZP_06632555.1| methyltransferase domain protein [Enterococcus faecalis S613]
 gi|312908686|ref|ZP_07767627.1| methyltransferase small domain protein [Enterococcus faecalis DAPTO
           512]
 gi|312909166|ref|ZP_07768024.1| methyltransferase small domain protein [Enterococcus faecalis DAPTO
           516]
 gi|256951195|gb|EEU67827.1| methyltransferase small [Enterococcus faecalis Merz96]
 gi|291077935|gb|EFE15299.1| methyltransferase domain protein [Enterococcus faecalis R712]
 gi|291082583|gb|EFE19546.1| methyltransferase domain protein [Enterococcus faecalis S613]
 gi|310625367|gb|EFQ08650.1| methyltransferase small domain protein [Enterococcus faecalis DAPTO
           512]
 gi|311290508|gb|EFQ69064.1| methyltransferase small domain protein [Enterococcus faecalis DAPTO
           516]
          Length = 202

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPSGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA    R V  V++ + +V  A+ N   N +  V I   +  E            
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYE------------ 119

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 ++   +  I  +PP         G++  
Sbjct: 120 -----TLNETTYAAIVSNPPIRAGKKVVHGILTG 148


>gi|168704435|ref|ZP_02736712.1| hypothetical protein GobsU_33174 [Gemmata obscuriglobus UQM 2246]
          Length = 391

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIV 262
           A      G++ +L CG G  ++ LAR    V AV++    V     N AA  V + V+ +
Sbjct: 90  ARRFAEFGNVADLCCGIGADAIALARAGLTVAAVDLDPLRVAMCGANAAALGVTDRVRGI 149

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
              +      +   R      D   +  RF
Sbjct: 150 AGDA--LAAPLPDARAAFADPDRRANGRRF 177


>gi|71899314|ref|ZP_00681475.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|71730940|gb|EAO33010.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
          Length = 389

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 27/156 (17%)

Query: 168 DERLTVAGRTLIYRQIE-----NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            E + +    + +           F            +W+     G    +L+L C  G 
Sbjct: 175 TESVVITEHGVKFLVDPMGAHKTGFF----ADQRENRQWLSQGVAGKT--VLDLCCNTGG 228

Query: 223 FSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           F++  A R    V+ V+I +  ++ A+ N   N                    +   F  
Sbjct: 229 FAVYAALRGAADVVGVDIDQDVIQIAKANAKLNS-------------VRPKFLQADIFPY 275

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           L+D  +   ++  + +DP +   D     ++ A   
Sbjct: 276 LRDAAVRGDQYDVVILDPAKMTRDRD--QIINALKK 309


>gi|260577563|ref|ZP_05845502.1| methylase of peptide chain release factor [Corynebacterium jeikeium
           ATCC 43734]
 gi|258604287|gb|EEW17525.1| methylase of peptide chain release factor [Corynebacterium jeikeium
           ATCC 43734]
          Length = 308

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 10/128 (7%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSL---VLARHFDRVLAVEIAKPSVEAARYN 250
              + +W      G     +++L CG G   L    L      +   EI+  ++  A  N
Sbjct: 113 TELLADWAAHFLTGRPTPHVVDLCCGPGTLGLGVSFLYDAPISLTGFEISPAALRLAEKN 172

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF-KTIFVDPPRSGLDDATV 309
                  N   V+        A+    E    +D+   ++     +  +PP         
Sbjct: 173 ARLVPQVNATFVQADL-----AVDDPLEPPATRDVSPGAFAPADVVVCNPPYVPESTEIS 227

Query: 310 GMVQAYPH 317
             V A PH
Sbjct: 228 PEVAADPH 235


>gi|161869127|ref|YP_001598293.1| HemK protein [Neisseria meningitidis 053442]
 gi|161594680|gb|ABX72340.1| HemK protein [Neisseria meningitidis 053442]
          Length = 234

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 36/180 (20%)

Query: 187 FTQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVE 238
           FT  N  +        H++E VLA      G + +L  G+G  ++ +A  R    V A +
Sbjct: 36  FT-VNPSVLIPRPETEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASD 93

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+ P++E AR N A      V+    S   F   M  E              ++  I  +
Sbjct: 94  ISPPALETARENAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSN 137

Query: 299 PP--RSGLDDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
           PP   +G      G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 138 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 196


>gi|152997751|ref|YP_001342586.1| hypothetical protein Mmwyl1_3750 [Marinomonas sp. MWYL1]
 gi|150838675|gb|ABR72651.1| conserved hypothetical protein 95 [Marinomonas sp. MWYL1]
          Length = 398

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 80/255 (31%), Gaps = 32/255 (12%)

Query: 73  IDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHRL 126
           ID F+  S L++ L I +         P  R      D L+     +    +V  I    
Sbjct: 72  IDTFLNKSTLVHRLKIALSLRELTYPAPYYRLVFGDSDGLSGLVVDRFADILVVQISTAG 131

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
           ++    E    L+D +  +   I +       +I     YV+E        L++ Q    
Sbjct: 132 MERVKNEIVEALQDVV--KPSAILMKNDGKMRQIEGLETYVEEAFGTVP-ELVFLQENGV 188

Query: 187 FTQPNAGINVHMLEWVLAATKGIQ--------GDLLELYCGNGNFSLVLARHFDR-VLAV 237
             Q           W     +  +          +L+++   G + +  A      V  +
Sbjct: 189 LFQAPVWDGQK-TGWFYDHRENRKTMQGFCDGKRVLDVFSYVGGWGVQAASAGATDVTFI 247

Query: 238 EIAKPSVEAARYNIAANHVNNVKIV-RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           + ++ ++     N+  N       +    + +  Q++  ++E            RF  + 
Sbjct: 248 DASESALSHVEENLKLNQFEGGSNLMHGDAFDAMQSLIEDKE------------RFDVVI 295

Query: 297 VDPPRSGLDDATVGM 311
           +DPP        +  
Sbjct: 296 MDPPAFIARRKDIKA 310


>gi|24372732|ref|NP_716774.1| SAM-dependent methyltransferase [Shewanella oneidensis MR-1]
 gi|81462958|sp|Q8EHR8|RLMI_SHEON RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|24346801|gb|AAN54219.1|AE015559_3 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 396

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 30/159 (18%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV--N 257
             +AA       +L  +C  G F L  A+     +  V+++  +++ AR N+  N +  +
Sbjct: 212 RAIAARFVKGKSVLNCFCYTGTFGLYAAKAGAASIENVDVSSLALDTARLNMRVNGLSDD 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP 316
           NV        +  +  R E               F  I +DPP+   +     G  + Y 
Sbjct: 272 NVHYNEADVFKLLRQYRDE------------GKTFDVIVLDPPKFADNKSQLNGACRGYK 319

Query: 317 HILYISCNPDSLCRDLSILSTT-----HTIERLALFDQF 350
            I  I+         L +L+        +   L   D F
Sbjct: 320 DINMIA---------LQLLNPGGVLLTFSCSGLMPADLF 349


>gi|56477677|ref|YP_159266.1| SAM-dependent methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56313720|emb|CAI08365.1| predicted SAM-dependent methyltransferases [Aromatoleum aromaticum
           EbN1]
          Length = 396

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L  +C  G FSL  LA     VL+++ + P+++A R N+A N   +         +  +
Sbjct: 223 VLNCFCYTGGFSLQALAGGATSVLSIDSSGPALDAGRRNLAMNPQLDASRAEWLQADVFE 282

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           A+R  +   R         RF  I +DPP+     A
Sbjct: 283 ALRVLKSEGR---------RFDLIVLDPPKFAPSAA 309


>gi|303240941|ref|ZP_07327452.1| methyltransferase small [Acetivibrio cellulolyticus CD2]
 gi|302591527|gb|EFL61264.1| methyltransferase small [Acetivibrio cellulolyticus CD2]
          Length = 197

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 31/123 (25%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN 257
           + ++ +   I G++L++ CG G   + L+R F   +V  ++I + +V+    NI  NH N
Sbjct: 46  DLLINSIPQITGEILDIGCGYGVIGISLSRLFPSAKVTMIDINERAVDLTTRNIKLNHAN 105

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           N   ++                         +  F  I  +PP           ++    
Sbjct: 106 NAGALQSD------------------GFINVTGMFDVIVSNPP-----------IRTGKK 136

Query: 318 ILY 320
           ++Y
Sbjct: 137 VIY 139


>gi|300088509|ref|YP_003759031.1| methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528242|gb|ADJ26710.1| Methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 274

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 212 DLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G F   LA        +V+ V++    +  AR N A +   NV+  +   +
Sbjct: 76  TVLDLGSGAG-FDAFLAARQVGPAGKVIGVDMTPDMLSRARDNAARSGFTNVEFRQGEIE 134

Query: 268 EFTQA 272
           +   A
Sbjct: 135 DLPVA 139


>gi|282934788|ref|ZP_06340026.1| 16S RNA G1207 methylase RsmC [Lactobacillus jensenii 208-1]
 gi|281301151|gb|EFA93457.1| 16S RNA G1207 methylase RsmC [Lactobacillus jensenii 208-1]
          Length = 199

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAA 253
            +MLE        + G++L++ CG G   L  A+     +V  V++ + +++ AR N   
Sbjct: 51  RNMLE-----ENPVSGNILDVGCGYGPIGLFAAKKWPDRQVDMVDVNERAMDLARKNAEV 105

Query: 254 NHVNNVKIVRMSSKE 268
           N V NV I   S  E
Sbjct: 106 NGVTNVNIFASSVYE 120


>gi|256852103|ref|ZP_05557490.1| 16S RNA methylase RsmC [Lactobacillus jensenii 27-2-CHN]
 gi|260661327|ref|ZP_05862240.1| 16S RNA methylase RsmC [Lactobacillus jensenii 115-3-CHN]
 gi|297205022|ref|ZP_06922418.1| methyltransferase domain protein [Lactobacillus jensenii JV-V16]
 gi|256615515|gb|EEU20705.1| 16S RNA methylase RsmC [Lactobacillus jensenii 27-2-CHN]
 gi|260547782|gb|EEX23759.1| 16S RNA methylase RsmC [Lactobacillus jensenii 115-3-CHN]
 gi|297149600|gb|EFH29897.1| methyltransferase domain protein [Lactobacillus jensenii JV-V16]
          Length = 203

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAA 253
            +MLE        + G++L++ CG G   L  A+     +V  V++ + +++ AR N   
Sbjct: 55  RNMLE-----ENPVSGNILDVGCGYGPIGLFAAKKWPDRQVDMVDVNERAMDLARKNAEV 109

Query: 254 NHVNNVKIVRMSSKE 268
           N V NV I   S  E
Sbjct: 110 NGVTNVNIFASSVYE 124


>gi|189218035|ref|YP_001938677.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
 gi|189184893|gb|ACD82078.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
          Length = 399

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 50/129 (38%), Gaps = 6/129 (4%)

Query: 191 NAGINVHMLEWVLAA----TKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVE 245
           N       L+                +L+ +   G FS+  AR   +  +AV+ +  +++
Sbjct: 203 NGQKTGLYLDQAANYKFISQIAKGKRVLDCFSYQGLFSIFCARGGAQCCVAVDQSAAAID 262

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
             + N +   +  ++ V  ++ ++ +   RE+E   L  +D  S+    +  +    G  
Sbjct: 263 IGKENASQLGLQ-IEWVCENAFDWLRKKEREKEKFDLIILDPPSFTKTKVQKESAFRGYH 321

Query: 306 DATVGMVQA 314
           +  +  ++ 
Sbjct: 322 EIHLRALRL 330


>gi|158335057|ref|YP_001516229.1| hypothetical protein AM1_1895 [Acaryochloris marina MBIC11017]
 gi|158305298|gb|ABW26915.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 266

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             L+  CG G  ++ LA     V  V+++   ++ A  N     V N   ++  
Sbjct: 76  HALDFGCGVGRIAIPLAGICQSVTGVDVSDSMLQEAVENCKRREVENATFIKGD 129


>gi|54295215|ref|YP_127630.1| hypothetical protein lpl2298 [Legionella pneumophila str. Lens]
 gi|53755047|emb|CAH16538.1| hypothetical protein lpl2298 [Legionella pneumophila str. Lens]
          Length = 212

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++ LAR   +V+A+E+    +  A+ N     V + +  V      F  
Sbjct: 60  VVDGFCGIGGSAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHLITFVHGD---FFD 116

Query: 272 AMRREREFNRLKDIDIHSYRFKTI 295
                +    L D      R++ I
Sbjct: 117 VAAEIKADAVLIDPPWGWPRYRKI 140


>gi|532249|gb|AAA65210.1| ORF5 [Streptomyces peucetius]
 gi|1093567|prf||2104259J ORF 5
          Length = 286

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 13/114 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L++ CG G      A       RV  ++IA   +E AR   A   + N+ +  M ++ 
Sbjct: 47  RVLDIGCGRGACLFPAAEKVGPQGRVHGIDIAPGMIEEARKEAAERGLRNIALDVMDAE- 105

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                       R  D+ + SY   ++   P   G      G++     I + S
Sbjct: 106 ------TPELPARSFDLVMGSY---SVIFLPDAVGALARYAGILDHGGRIAFTS 150


>gi|154331559|ref|XP_001561597.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134058916|emb|CAM36743.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 390

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           +++++CG G F+L LA H     + A+E    S++  + N   N V + +  V   ++E 
Sbjct: 233 VVDMFCGIGYFALPLAMHGNVAEIHALEKNPDSIDFVKLNAVLNRVGHLIHPVCGDNREV 292

Query: 270 TQAM 273
            + +
Sbjct: 293 GEEL 296


>gi|68536430|ref|YP_251135.1| methylase of peptide chain release factors [Corynebacterium
           jeikeium K411]
 gi|68264029|emb|CAI37517.1| methylase of peptide chain release factors [Corynebacterium
           jeikeium K411]
          Length = 308

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 10/128 (7%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSL---VLARHFDRVLAVEIAKPSVEAARYN 250
              + +W      G     +++L CG G   L    L      +   EI+  ++  A  N
Sbjct: 113 TELLADWAAHFLTGRPTPHVVDLCCGPGTLGLGVSFLYDAPISLTGFEISPAALRLAEKN 172

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF-KTIFVDPPRSGLDDATV 309
                  N   V+        A+    E    +D+   ++     +  +PP         
Sbjct: 173 ARLVPQVNATFVQADL-----AVDDPLEPPATRDVSPGAFAPADVVVCNPPYVPESTEIS 227

Query: 310 GMVQAYPH 317
             V A PH
Sbjct: 228 PEVAADPH 235


>gi|295695885|ref|YP_003589123.1| methyltransferase small [Bacillus tusciae DSM 2912]
 gi|295411487|gb|ADG05979.1| methyltransferase small [Bacillus tusciae DSM 2912]
          Length = 394

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 95/268 (35%), Gaps = 38/268 (14%)

Query: 71  MRIDYFMPGSLLINALMIEMMAT---IRLEPLLRAKLFQIDYLTSQS----DQAIVTLIY 123
            R+D  +  S     +   +      +   P  R    + D+L        +  +V  + 
Sbjct: 67  YRVDEPIDASWAARRVDEALAWRERFLPGVPSCRLIYGEADFLPGLIVDRFENILVVQVL 126

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQL---IGRANKTKICLDRDY--VDERLTVAGRTL 178
              ++  W      L D L+ R   ++    +       + +  D+  V ER+ +    L
Sbjct: 127 ALGMERLWPWIRRALVDRLNPRGILLRNDVPVRGKEGLPLDVREDFGQVPERVWIEENGL 186

Query: 179 -----IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFD 232
                ++R  +  +              +     G Q  +L+++   G F+L  L    +
Sbjct: 187 RLAVDVWRGQKTGYF----FDQRENRPAIAPLVPGAQ--VLDVFTHTGAFALHALKFGAE 240

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            V+ V+ ++ +++ AR N+  N  +   + V  ++            F+ L+ +     +
Sbjct: 241 HVVCVDQSREALDLARENVEVNGFSGRAEFVEANA------------FDELRALVDQGRQ 288

Query: 292 FKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           F  + +DPP       +  G ++ Y  I
Sbjct: 289 FDVVILDPPAFAKSRSSLPGAIRGYKEI 316


>gi|294954200|ref|XP_002788049.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239903264|gb|EER19845.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 462

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 21/109 (19%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAAN 254
             ++E+V          + +L C  G F++  A     RV+ V+I + S+  A+ N   N
Sbjct: 260 RKLMEYVRMNKVDS---VADLCCYTGAFAIHAAAGGARRVVGVDIQEKSITNAKVNADLN 316

Query: 255 H---VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                + +  +     +F +    E               F  I +DPP
Sbjct: 317 GNNIASKIDWLTSDVGDFCRNGGTE--------------EFDLIILDPP 351


>gi|254172772|ref|ZP_04879446.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus sp.
           AM4]
 gi|214032928|gb|EEB73756.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus sp.
           AM4]
          Length = 229

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LE +L      +G +L+L CG G FS +L  H   V+ V+ ++  +E AR        + 
Sbjct: 28  LEPLLLKFMPKRGRVLDLACGVGGFSFLLEDHGFEVVGVDSSELMLERAREYAKE-KRSR 86

Query: 259 VKIVRMSSKEF 269
           V+ V+  ++E 
Sbjct: 87  VQFVKADAQEL 97


>gi|12859716|dbj|BAB31750.1| unnamed protein product [Mus musculus]
          Length = 423

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 16/200 (8%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +     +    +   A +  +  L     +   L   S+      ++  L  + W   A
Sbjct: 98  CLEVRRWVEDRGVTWSAELEAD--LPRSWQRHGDLMLLSEDCFQATLWKGLEPELWETVA 155

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G    +   L  D+        G    +   +   SF      
Sbjct: 156 SALGVQRLAKRGRVLPDGTRTPSVTLLLGDHGWVEHMDNGIRYKFDVTQCMFSF------ 209

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 210 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 267

Query: 251 IAANH-VNNVKIVRMSSKEF 269
           +  N   +  +I    +++ 
Sbjct: 268 LEINGVADRCQIHFGDNRKL 287


>gi|15669752|ref|NP_248565.1| met-10+ related protein [Methanocaldococcus jannaschii DSM 2661]
 gi|3025176|sp|Q58952|TYW2_METJA RecName: Full=tRNA wyosine derivatives biosynthesis protein Taw2;
           AltName: Full=Alpha-amino-alpha-carboxypropyl
           transferase Taw2; AltName: Full=MjTYW2
 gi|1500450|gb|AAB99577.1| met-10+ related protein [Methanocaldococcus jannaschii DSM 2661]
          Length = 249

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 13/156 (8%)

Query: 119 VTLIYHRLLDDAWRECAIRLR-DALHARKYQIQLIGRANKTKICLDRDY--VDERLTVAG 175
           V ++   L +D  RE   R +  A+     QI    R    KI   ++   + +      
Sbjct: 11  VVIVKKELSEDEIREIVKRTKCKAILLYTTQITGEFRTPHVKILYGKETETIHKEYGCLF 70

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-- 233
           +  + + +   ++Q N      M     A        +++++ G G F++ LA++     
Sbjct: 71  KLDVAKIM---WSQGNIEERKRM-----AFISNENEVVVDMFAGIGYFTIPLAKYSKPKL 122

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           V A+E    +      NI  N +NNV  +   +++ 
Sbjct: 123 VYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV 158


>gi|256005297|ref|ZP_05430263.1| methyltransferase small [Clostridium thermocellum DSM 2360]
 gi|255990733|gb|EEU00849.1| methyltransferase small [Clostridium thermocellum DSM 2360]
 gi|316939532|gb|ADU73566.1| methyltransferase small [Clostridium thermocellum DSM 1313]
          Length = 196

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 31/123 (25%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + ++ +   + G +L++ CG G   + LA       V  ++I + +V+ A  NI  N V 
Sbjct: 46  DLLIRSVPPLDGSILDIGCGYGVIGISLALLNPSSFVTMIDINERAVDLASQNIHLNGVT 105

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           N   +                          S +F  I  +PP           ++A   
Sbjct: 106 NATALTSD------------------GFSNVSDKFDAIVSNPP-----------IRAGKK 136

Query: 318 ILY 320
           ++Y
Sbjct: 137 VIY 139


>gi|118150645|ref|NP_080918.2| tRNA wybutosine-synthesizing protein 2 homolog [Mus musculus]
 gi|81895986|sp|Q8BG71|TYW2_MOUSE RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|26327311|dbj|BAC27399.1| unnamed protein product [Mus musculus]
 gi|26345714|dbj|BAC36508.1| unnamed protein product [Mus musculus]
 gi|26347897|dbj|BAC37597.1| unnamed protein product [Mus musculus]
 gi|148697363|gb|EDL29310.1| mCG51593 [Mus musculus]
          Length = 446

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 16/200 (8%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +     +    +   A +  +  L     +   L   S+      ++  L  + W   A
Sbjct: 98  CLEVRRWVEDRGVTWSAELEAD--LPRSWQRHGDLMLLSEDCFQATLWKGLEPELWETVA 155

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G    +   L  D+        G    +   +   SF      
Sbjct: 156 SALGVQRLAKRGRVLPDGTRTPSVTLLLGDHGWVEHMDNGIRYKFDVTQCMFSF------ 209

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 210 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 267

Query: 251 IAANH-VNNVKIVRMSSKEF 269
           +  N   +  +I    +++ 
Sbjct: 268 LEINGVADRCQIHFGDNRKL 287


>gi|125975416|ref|YP_001039326.1| methyltransferase small [Clostridium thermocellum ATCC 27405]
 gi|281419377|ref|ZP_06250392.1| methyltransferase [Clostridium thermocellum JW20]
 gi|125715641|gb|ABN54133.1| 16S rRNA m(2)G 1207 methyltransferase [Clostridium thermocellum
           ATCC 27405]
 gi|281406997|gb|EFB37260.1| methyltransferase [Clostridium thermocellum JW20]
          Length = 196

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 31/123 (25%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + ++ +   + G +L++ CG G   + LA       V  ++I + +V+ A  NI  N V 
Sbjct: 46  DLLIRSVPPLDGSILDIGCGYGVIGISLALLNPSSFVTMIDINERAVDLASQNIHLNGVT 105

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           N   +                          S +F  I  +PP           ++A   
Sbjct: 106 NATALTSD------------------GFSNVSDKFDAIVSNPP-----------IRAGKK 136

Query: 318 ILY 320
           ++Y
Sbjct: 137 VIY 139


>gi|319948467|ref|ZP_08022603.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Dietzia cinnamea P4]
 gi|319437887|gb|EFV92871.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Dietzia cinnamea P4]
          Length = 322

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 22/131 (16%)

Query: 195 NVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
              ++EW LAA      +    +++L  G+G  +L +A  R   RV AVE+   ++E  R
Sbjct: 101 TELLVEWTLAALPAPTPEPGPVVVDLCAGSGTIALEIAHARPDARVHAVELHDAALEWLR 160

Query: 249 YNI---AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            N    AA     V++ R  + +                +     R   +  +PP   + 
Sbjct: 161 RNAHERAAAGDTPVEVHRADATDIET-------------LAHLRGRVAAVVSNPPYIPVT 207

Query: 306 DATVGMVQAYP 316
           D     V A+ 
Sbjct: 208 DDLPAEVLAHE 218


>gi|307707731|ref|ZP_07644210.1| methyltransferase small domain superfamily [Streptococcus mitis
           NCTC 12261]
 gi|307616229|gb|EFN95423.1| methyltransferase small domain superfamily [Streptococcus mitis
           NCTC 12261]
          Length = 195

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 196 VHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
            +++   +     +    ++L+   G G  +L LA+    V  V+I++  +E AR     
Sbjct: 21  ANLVYQAIEKQLDLLSDKEILDFGGGTGLLTLPLAKQAKSVTLVDISEKMLEQARLKAEQ 80

Query: 254 NHVNNVKIVRMS 265
             + N++ +   
Sbjct: 81  QEIKNIQFLEQD 92


>gi|303245172|ref|ZP_07331482.1| Methyltransferase type 11 [Methanothermococcus okinawensis IH1]
 gi|302484461|gb|EFL47415.1| Methyltransferase type 11 [Methanothermococcus okinawensis IH1]
          Length = 205

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            VL+ T   +  +L++ CG G  SL+LA     V+ +++++  +  A        + N+ 
Sbjct: 35  TVLSETFKGKMKILDVGCGTGFLSLILAELGHEVVGIDLSEGMLSKAEKKAGDLGL-NID 93

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
            +   ++          +    + I            +  R   ++  + ++++   
Sbjct: 94  FIIGDAENL-PFDDGSFDIVVERHILWTLPNPDKAIKEWSRVIKNEGKLILIESEKK 149


>gi|149186010|ref|ZP_01864325.1| SAM-dependent methyltransferase [Erythrobacter sp. SD-21]
 gi|148830571|gb|EDL49007.1| SAM-dependent methyltransferase [Erythrobacter sp. SD-21]
          Length = 295

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            F    A +   M E +   T     +L   Y G G  +L     + RV  V+ +K SV 
Sbjct: 104 GFFPDMAPVWTWMGEQLDGRTDAETMNLF-GYTGVGTQAL---SKYGRVTHVDASKKSVA 159

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL- 304
            AR N A   +++ + VR   ++  +   RE    R         R+  I +DPP+ G  
Sbjct: 160 QARENAALAGLDD-RPVRWLVEDAMKYTAREVRRGR---------RYDGIILDPPKFGRG 209

Query: 305 -DDATVGMVQAYPHIL 319
            D     + Q  P ++
Sbjct: 210 PDGEVWRLEQGLPDLV 225


>gi|148360197|ref|YP_001251404.1| hypothetical protein LPC_2129 [Legionella pneumophila str. Corby]
 gi|148281970|gb|ABQ56058.1| hypothetical protein LPC_2129 [Legionella pneumophila str. Corby]
          Length = 212

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++ LAR   +V+A+E+    +  A+ N     V + +  V      F  
Sbjct: 60  VVDGFCGIGGSAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHLITFVHGD---FFD 116

Query: 272 AMRREREFNRLKDIDIHSYRFKTI 295
                +    L D      R++ I
Sbjct: 117 VAAEIKADAVLIDPPWGWPRYRKI 140


>gi|109083855|ref|XP_001097647.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase isoform 3 [Macaca
           mulatta]
          Length = 509

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 97/271 (35%), Gaps = 20/271 (7%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + +F   +  K  + +   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 143 YKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYENFKSEEILRAVLPEGQDVTS--GF 200

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY------VDER 170
           + V  I H  L D        +   +  +   I            + R++       ++ 
Sbjct: 201 SRVGHIAHLNLRDHQLPFKQLIGQVMIDKNPGITSAVNKINNIDNMYRNFHMEVLSGEQN 260

Query: 171 LTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVL 227
           +    R   Y   E  F++   N  ++    E          GD+L +++ G G F++ +
Sbjct: 261 MMTKVRENKYTY-EFDFSKVYWNPRLST---EHSRITELLKAGDVLFDVFAGVGPFAIPV 316

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
           A+    V A ++   S +   +N   N V+  VKI  +  K+F Q   +E     L    
Sbjct: 317 AKKNCTVFANDLNPESHKWLLHNCKLNKVDQKVKIFNLDGKDFLQGPVKEELIQLLSLSK 376

Query: 287 IHSYRFKTIFVDPPRSG-LDDATVGMVQAYP 316
                   +   P ++     A   ++   P
Sbjct: 377 ERKPSVHIVMNLPAKAIEFLSAFKWLLDGQP 407


>gi|255319518|ref|ZP_05360732.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter radioresistens SK82]
 gi|262378459|ref|ZP_06071616.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter radioresistens SH164]
 gi|255303458|gb|EET82661.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter radioresistens SK82]
 gi|262299744|gb|EEY87656.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acinetobacter radioresistens SH164]
          Length = 274

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 73/213 (34%), Gaps = 34/213 (15%)

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK------ICLDRD 165
           S   Q  + L+ H +L+    E   R    L A +    L   A          I   + 
Sbjct: 15  SYERQENIWLLEH-ILNIKMFEFRFRQDKELTAEQQHAYLAALARLEAGEPLAYILGSQP 73

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           +    L V   TL+ R                ++E VL      +  +++L  G G  +L
Sbjct: 74  FWTLDLKVTRDTLVPRPD-----------TEVLVETVLTLELPEETKMVDLGTGTGAIAL 122

Query: 226 VLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            LA  + +  VLA ++  P++  AR N   + +  V+    +              N+L 
Sbjct: 123 ALASEKPYWSVLATDVYMPTLTVARENADKHGLQQVEFACGA---------WFAALNQLP 173

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           +       F  I  +PP    +D  +  +   P
Sbjct: 174 EP-----MFDLIVSNPPYIDAEDRHMKDLATEP 201


>gi|257064985|ref|YP_003144657.1| SAM-dependent methyltransferase [Slackia heliotrinireducens DSM
           20476]
 gi|256792638|gb|ACV23308.1| SAM-dependent methyltransferase [Slackia heliotrinireducens DSM
           20476]
          Length = 416

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 14/125 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHV- 256
                 A       +L+ +   G+F+L  A      V AV++++ +++ AR N   N   
Sbjct: 230 YNRRAVAALASGKRVLDCFTHTGSFALNAAVGGAEFVNAVDVSQLAIDQARANARLNGCE 289

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAY 315
           + +     +  +    M  +R+           + +  I +DPP       T+G   + Y
Sbjct: 290 DRMAFTCTNVFDLLPQMEEDRD-----------HSYDFIILDPPAFTKSRKTIGSASRGY 338

Query: 316 PHILY 320
             I Y
Sbjct: 339 KEINY 343


>gi|254385369|ref|ZP_05000698.1| methyltransferase [Streptomyces sp. Mg1]
 gi|194344243|gb|EDX25209.1| methyltransferase [Streptomyces sp. Mg1]
          Length = 341

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            V +++ ++         L++L CG+G F L L       + V+    S++ AR   A  
Sbjct: 139 AVPLVKRLITRLPEPPSALVDLGCGDGTFLLDLCEGGSPGIGVDPTAGSIDNARRAAAER 198

Query: 255 HV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            + + V  V  +++++   ++ E          + ++  + +     R    +     + 
Sbjct: 199 GMSDQVSFVNATAEDYMAQVKAEA---VGAPCFVTAFSLQEVLEQQGRGATVEVVRTALA 255

Query: 314 AYP 316
           + P
Sbjct: 256 SAP 258


>gi|184201225|ref|YP_001855432.1| putative methyltransferase [Kocuria rhizophila DC2201]
 gi|183581455|dbj|BAG29926.1| putative methyltransferase [Kocuria rhizophila DC2201]
          Length = 218

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 22/110 (20%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +LL++ CG G  ++ LA+     RV AV++ + S+     N AA  ++ V+ +       
Sbjct: 65  ELLDIGCGWGPLTIALAQAAPEARVTAVDVNERSLRLTAENAAALGLSGVEAL------- 117

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
                       L         F TI+ +PP R G D     +    P +
Sbjct: 118 ------------LPGDVPAGRTFDTIWSNPPIRVGKDALHEILATWLPRL 155


>gi|148554335|ref|YP_001261917.1| SAM-dependent methyltransferase-like protein [Sphingomonas
           wittichii RW1]
 gi|148499525|gb|ABQ67779.1| SAM-dependent methyltransferase-like protein [Sphingomonas
           wittichii RW1]
          Length = 288

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 23/141 (16%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL 227
           E +    +   +R +  +F      +      W     +  +GD ++ L+   G  +L L
Sbjct: 83  EEVRFTAQNTPFRHL--AFF---PDMAPQ---WAWMRDRTAEGDEVMNLFGYTGVGTLAL 134

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDI 285
           A    R+  V+ +K SVEAA+ N   + + +  ++ +   + +FT    R          
Sbjct: 135 AARGARMTHVDASKKSVEAAKANAFLSDMADRPIRWMVDDAAKFTAREVR---------- 184

Query: 286 DIHSYRFKTIFVDPPRSGLDD 306
                R+  IF+DPP+ G   
Sbjct: 185 --RGRRYDGIFLDPPKFGRGP 203


>gi|33416520|gb|AAH55850.1| TRNA methyltranferase 12 homolog (S. cerevisiae) [Mus musculus]
          Length = 446

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 16/200 (8%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +     +    +   A +  +  L     +   L   S+      ++  L  + W   A
Sbjct: 98  CLEVRRWVEDRGVTWSAELEAD--LPRSWQRHGDLMLLSEDCFQATLWKGLEPELWETVA 155

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G    +   L  D+        G    +   +   SF      
Sbjct: 156 SALGVQRLAKRGRVLPDGTRTPSVTLLLGDHGWVEHMDNGIRYKFDVTQCMFSF------ 209

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 210 --GNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 267

Query: 251 IAANH-VNNVKIVRMSSKEF 269
           +  N   +  +I    +++ 
Sbjct: 268 LEINGVADRCQIHFGDNRKL 287


>gi|332982517|ref|YP_004463958.1| type 11 methyltransferase [Mahella australiensis 50-1 BON]
 gi|332700195|gb|AEE97136.1| Methyltransferase type 11 [Mahella australiensis 50-1 BON]
          Length = 248

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           ++ +       +L++ CG G ++L +A+    ++ ++I++  ++ A  + A   +     
Sbjct: 24  LVQSVFDKSASVLDVACGTGTYTLAMAKMGYNMIGIDISRAMIDIAMASAADGGLT-AAF 82

Query: 262 VRMSSKEFT 270
             M   + +
Sbjct: 83  YVMDMTDLS 91


>gi|260888227|ref|ZP_05899490.1| ribosomal protein L11 methyltransferase [Selenomonas sputigena ATCC
           35185]
 gi|260862061|gb|EEX76561.1| ribosomal protein L11 methyltransferase [Selenomonas sputigena ATCC
           35185]
          Length = 320

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 79/239 (33%), Gaps = 32/239 (13%)

Query: 71  MRIDYFMPGSLLINALMIEMMAT-------IRLEPLLRAKLFQIDYLTSQSDQAIVTLIY 123
           + +D     + L++ ++ E+ A          L   +R+ L+    L    +  +V +  
Sbjct: 13  VSVDTSHEATDLVSEILQELGAAGVVIEDPALLNEYIRSGLWDYTDLKESEETEVVRVKA 72

Query: 124 HRLLDDAWRECAIRLRDALHA-RKYQIQLIGRANKTKICLDRDYVD-------------- 168
           +  LD+        L + L +  ++ I     A   K   D D+ +              
Sbjct: 73  YWALDEELEGKLQNLSERLASLAQHGIDKGAGAVSWKAVADEDWAETWKEFFHTEKIGAR 132

Query: 169 -------ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
                  E        ++      +           +    L         + ++  G+G
Sbjct: 133 TVIKPTWEEYEAEAGEIVAELDPGAAFGTGQHATTSLCIRALEDLVRPGMTVFDVGTGSG 192

Query: 222 NFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
             ++V A+    RV AV+    +V  AR N+  N   +V  VR    +  +++  E + 
Sbjct: 193 VLAIVAAKLGAKRVEAVDFDPVAVRVARENVRQNGAEDV--VRTERSDLLKSVAGEADL 249


>gi|291287502|ref|YP_003504318.1| Tellurite resistance methyltransferase, TehB, core [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884662|gb|ADD68362.1| Tellurite resistance methyltransferase, TehB, core [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 254

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           ++E +      ++G  +L++ CG G ++L LA+    V   +I++  +     +     +
Sbjct: 36  VIEMIQEKGVPLKGKTILDIGCGTGRYTLRLAKIAKDVTGTDISEDMLAIMDADARDEGL 95

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +N+K +R++ KE+T   R +  F  +         F  + 
Sbjct: 96  SNLKSIRVNWKEYTTDERWDVTFCTITPAVKTPEDFAKMV 135


>gi|73668917|ref|YP_304932.1| methyltransferase [Methanosarcina barkeri str. Fusaro]
 gi|72396079|gb|AAZ70352.1| methyltransferase [Methanosarcina barkeri str. Fusaro]
          Length = 336

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++++ G G +S+++A+     +VLA++    +V   R NI  N   N++ +   ++E  
Sbjct: 187 VVDMFAGVGPYSILIAKSKKPSKVLAIDKNPEAVRYLRENIILNSAKNIEAIEGDAREEA 246

Query: 271 QAMR--REREFNRLKDIDIHSYRFKTIFVDP 299
           +      +     L            +   P
Sbjct: 247 KKFAGTADHVIMNLPHSAFEFLDSAVLLTKP 277


>gi|319761652|ref|YP_004125589.1| protein-(glutamine-n5) methyltransferase, release factor-specific
           [Alicycliphilus denitrificans BC]
 gi|317116213|gb|ADU98701.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Alicycliphilus denitrificans BC]
          Length = 281

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 22/125 (17%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNI 251
              +++W L     +    + +L  G+G  +L L  AR   RVLA++ +  ++  AR N 
Sbjct: 98  TEILVDWALELLAPLPAPRVADLGTGSGAIALALQHARPDARVLAMDASAGALAVARANA 157

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +  V+ V+                     +   +  F  I  +PP     D  +  
Sbjct: 158 ERLGLP-VRFVQAD------------------WLAGIAGPFDAIVSNPPYIPAQDPHLAA 198

Query: 312 VQAYP 316
           +   P
Sbjct: 199 LAHEP 203


>gi|254713277|ref|ZP_05175088.1| putative SAM dependent methyltransferase [Brucella ceti M644/93/1]
 gi|254716370|ref|ZP_05178181.1| putative SAM dependent methyltransferase [Brucella ceti M13/05/1]
 gi|261218152|ref|ZP_05932433.1| SAM dependent methyltransferase [Brucella ceti M13/05/1]
 gi|261321000|ref|ZP_05960197.1| SAM dependent methyltransferase [Brucella ceti M644/93/1]
 gi|260923241|gb|EEX89809.1| SAM dependent methyltransferase [Brucella ceti M13/05/1]
 gi|261293690|gb|EEX97186.1| SAM dependent methyltransferase [Brucella ceti M644/93/1]
          Length = 381

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 27/186 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 159 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRERE 278
           G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R   
Sbjct: 217 GVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREERRGS 276

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILS 336
           F            +  I +DPP  G         + +  P ++  +C      + L+++ 
Sbjct: 277 F------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAVIL 323

Query: 337 TTHTIE 342
           T ++I 
Sbjct: 324 TAYSIR 329


>gi|240170754|ref|ZP_04749413.1| hypothetical protein MkanA1_15682 [Mycobacterium kansasii ATCC
           12478]
          Length = 239

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 200 EWVLAATKG--IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           E V+A   G  + G++L++ CG G+ ++ LA+H  RV A++I+  ++  A    A   V+
Sbjct: 60  ENVIAWQTGGWVHGEVLDIGCGFGDNAIYLAQHGHRVTAMDISPTALITAERRAADAGVD 119

Query: 258 NVKIVRMSSK 267
            V+     + 
Sbjct: 120 -VRFAAADAT 128


>gi|115760358|ref|XP_001198852.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115949723|ref|XP_001184273.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 620

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 2/112 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +         +L+L CG G  SLV A ++    V+ ++ ++ ++   +       + NV+
Sbjct: 427 IEEQMKSGIRILDLGCGRGLASLVFAENYPNSTVVGLDFSEEAINYGKERAKEKGLTNVE 486

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            V   +           ++    D+         + +   R    D    M+
Sbjct: 487 FVCEDAACIPDDWNNTIDYIYTFDVIHDLAHADNVLLALNRILKPDGVFSMI 538


>gi|116624275|ref|YP_826431.1| demethylmenaquinone methyltransferase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227437|gb|ABJ86146.1| demethylmenaquinone methyltransferase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 272

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYN 250
             + +LE            +L++ CG G  +   A        V+  +I+   ++  R  
Sbjct: 32  AQMRLLELAALRPGE---RVLDIACGTGLITFPAAIAVGMEGLVVGTDISAGMIDRGREE 88

Query: 251 IAANHVNNVKIVRMSSKEF 269
            A   + NV   R+ ++  
Sbjct: 89  AAKRGLANVTFQRVDAEAL 107


>gi|284164314|ref|YP_003402593.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284013969|gb|ADB59920.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 273

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           A  NV M E +  A     G  +L++ CG+G  +L+  R +  V  ++     +E A+  
Sbjct: 30  ARQNVVMAEALCEAVDPHPGQRVLDVACGSGTAALIAERRYCDVTGLDYVPGLIERAKTR 89

Query: 251 IAANHVNNVKIVRMSSKE 268
             AN    +      +++
Sbjct: 90  ARANGQE-IDFQVGDAQD 106


>gi|254694944|ref|ZP_05156772.1| putative SAM dependent methyltransferase [Brucella abortus bv. 3
           str. Tulya]
 gi|254700960|ref|ZP_05162788.1| putative SAM dependent methyltransferase [Brucella suis bv. 5 str.
           513]
 gi|254707156|ref|ZP_05168984.1| putative SAM dependent methyltransferase [Brucella pinnipedialis
           M163/99/10]
 gi|254718367|ref|ZP_05180178.1| putative SAM dependent methyltransferase [Brucella sp. 83/13]
 gi|256060293|ref|ZP_05450466.1| putative SAM dependent methyltransferase [Brucella neotomae 5K33]
 gi|256368615|ref|YP_003106121.1| SAM dependent methyltransferase, putative [Brucella microti CCM
           4915]
 gi|260169727|ref|ZP_05756538.1| SAM dependent methyltransferase, putative [Brucella sp. F5/99]
 gi|261215283|ref|ZP_05929564.1| SAM dependent methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261314634|ref|ZP_05953831.1| SAM dependent methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261324265|ref|ZP_05963462.1| SAM dependent methyltransferase [Brucella neotomae 5K33]
 gi|261751479|ref|ZP_05995188.1| SAM dependent methyltransferase [Brucella suis bv. 5 str. 513]
 gi|261759265|ref|ZP_06002974.1| SAM dependent methyltransferase [Brucella sp. F5/99]
 gi|265983328|ref|ZP_06096063.1| SAM dependent methyltransferase [Brucella sp. 83/13]
 gi|294851550|ref|ZP_06792223.1| SAM-dependent methyltransferase [Brucella sp. NVSL 07-0026]
 gi|306839598|ref|ZP_07472402.1| SAM dependent methyltransferase [Brucella sp. NF 2653]
 gi|255998773|gb|ACU47172.1| SAM dependent methyltransferase, putative [Brucella microti CCM
           4915]
 gi|260916890|gb|EEX83751.1| SAM dependent methyltransferase [Brucella abortus bv. 3 str. Tulya]
 gi|261300245|gb|EEY03742.1| SAM dependent methyltransferase [Brucella neotomae 5K33]
 gi|261303660|gb|EEY07157.1| SAM dependent methyltransferase [Brucella pinnipedialis M163/99/10]
 gi|261739249|gb|EEY27245.1| SAM dependent methyltransferase [Brucella sp. F5/99]
 gi|261741232|gb|EEY29158.1| SAM dependent methyltransferase [Brucella suis bv. 5 str. 513]
 gi|264661920|gb|EEZ32181.1| SAM dependent methyltransferase [Brucella sp. 83/13]
 gi|294820139|gb|EFG37138.1| SAM-dependent methyltransferase [Brucella sp. NVSL 07-0026]
 gi|306405296|gb|EFM61571.1| SAM dependent methyltransferase [Brucella sp. NF 2653]
          Length = 381

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 27/186 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 159 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRERE 278
           G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R   
Sbjct: 217 GVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREERRGS 276

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILS 336
           F            +  I +DPP  G         + +  P ++  +C      + L+++ 
Sbjct: 277 F------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAVIL 323

Query: 337 TTHTIE 342
           T ++I 
Sbjct: 324 TAYSIR 329


>gi|239618399|ref|YP_002941721.1| Methyltransferase type 11 [Kosmotoga olearia TBF 19.5.1]
 gi|239507230|gb|ACR80717.1| Methyltransferase type 11 [Kosmotoga olearia TBF 19.5.1]
          Length = 235

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAA 253
              +L W     K  +  +LEL  G+G  S+ LAR +D  + A+++ +  +E A  N   
Sbjct: 36  ATVLLAWYCVLPKATK-RVLELGTGSGAISIYLARKYDVEITAIDVDEELIEIAHKNARV 94

Query: 254 NHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           N+V + VK +++SS     AM  E+           +  F  +  +PP   
Sbjct: 95  NNVTDKVKFMQLSS-----AMAVEK---------FSAGSFDVVVSNPPHFA 131


>gi|192359316|ref|YP_001981173.1| methyltransferase, HemK family [Cellvibrio japonicus Ueda107]
 gi|190685481|gb|ACE83159.1| methyltransferase, HemK family [Cellvibrio japonicus Ueda107]
          Length = 265

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/198 (22%), Positives = 74/198 (37%), Gaps = 44/198 (22%)

Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
           +L  ++   + T   H L D++ R+    L     AR+   + I       I  +R++  
Sbjct: 15  HLLQKNRTWLYTWPDHLLADESLRQFETCL-----ARRETGEPIAH-----IIGEREFWS 64

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNFS 224
             L V   TLI R                ++E VLA+            L+L  G G  +
Sbjct: 65  LPLLVNNSTLIPRPD-----------TEVVVEQVLASFAEDAPTQVRRCLDLGTGTGAIA 113

Query: 225 LVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           L LA  +   +VLAV+ +  +V  AR N+A   + NV+++                    
Sbjct: 114 LALANEKKHWQVLAVDRSADAVALARTNVARLRLPNVQVLCSD----------------- 156

Query: 283 KDIDIHSYRFKTIFVDPP 300
               I +  F  I  +PP
Sbjct: 157 WFSAIPAQTFDVIVSNPP 174


>gi|163842421|ref|YP_001626825.1| hypothetical protein BSUIS_A0152 [Brucella suis ATCC 23445]
 gi|163673144|gb|ABY37255.1| Hypothetical protein BSUIS_A0152 [Brucella suis ATCC 23445]
          Length = 381

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 27/186 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 159 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRERE 278
           G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R   
Sbjct: 217 GVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREERRGS 276

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILS 336
           F            +  I +DPP  G         + +  P ++  +C      + L+++ 
Sbjct: 277 F------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAVIL 323

Query: 337 TTHTIE 342
           T ++I 
Sbjct: 324 TAYSIR 329


>gi|89901378|ref|YP_523849.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhodoferax
           ferrireducens T118]
 gi|89346115|gb|ABD70318.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rhodoferax
           ferrireducens T118]
          Length = 217

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   ML+            +LE+  G+G  + +LA    RV+++EI     + AR N+
Sbjct: 63  PRVEARMLQDAAVQKHE---KVLEIGAGSGYMAALLAHRAQRVISLEINPELAQMARANL 119

Query: 252 AANHVNNVKIVRMSSKEFTQA 272
               ++NV++ +    +   A
Sbjct: 120 QKAGIHNVEVRQFDGAKGVSA 140


>gi|307611227|emb|CBX00878.1| hypothetical protein LPW_25811 [Legionella pneumophila 130b]
          Length = 212

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++ LAR   +V+A+E+    +  A+ N     V + +  V      F  
Sbjct: 60  VVDGFCGIGGSAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHLITFVHGD---FFD 116

Query: 272 AMRREREFNRLKDIDIHSYRFKTI 295
                +    L D      R++ I
Sbjct: 117 VAAEIKADAVLIDPPWGWPRYRKI 140


>gi|297624094|ref|YP_003705528.1| rRNA (guanine-N(2)-)-methyltransferase [Truepera radiovictrix DSM
           17093]
 gi|297165274|gb|ADI14985.1| rRNA (guanine-N(2)-)-methyltransferase [Truepera radiovictrix DSM
           17093]
          Length = 387

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 11/91 (12%)

Query: 211 GDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L L+   G FSL   R     V +V++A  + E AR N A N           +  F
Sbjct: 211 KTVLNLFAYTGAFSLYAVRGGAAHVTSVDLAPRATEDARRNFALNG------FAPDAHRF 264

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             A      F  L D      RF  + +DPP
Sbjct: 265 LTA----DVFALLADYARGERRFDVVILDPP 291


>gi|54298357|ref|YP_124726.1| hypothetical protein lpp2419 [Legionella pneumophila str. Paris]
 gi|53752142|emb|CAH13572.1| hypothetical protein lpp2419 [Legionella pneumophila str. Paris]
          Length = 212

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++ LAR   +V+A+E+    +  A+ N     V + +  V      F  
Sbjct: 60  VVDGFCGIGGSAIALARTGKKVIAIEMDSVRLAMAKNNARVYGVEHLITFVHGD---FFD 116

Query: 272 AMRREREFNRLKDIDIHSYRFKTI 295
                +    L D      R++ I
Sbjct: 117 VAAEIKADAVLIDPPWGWPRYRKI 140


>gi|298346686|ref|YP_003719373.1| putative 16S rRNA methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236747|gb|ADI67879.1| possible 16S rRNA methyltransferase [Mobiluncus curtisii ATCC
           43063]
          Length = 167

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 18/111 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G  G L+++ CG G  +L LA      +V AV++   ++E  R N  AN ++N+      
Sbjct: 22  GGSGVLVDVGCGWGPLALTLAAECPSAQVYAVDVNARALELTRANATANGLHNI------ 75

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                Q +     F  L            I+ +PP      A   M +A+ 
Sbjct: 76  -----QVLSEADAFAALG-----PNSVDVIWSNPPVRVGKMALHAMWEAWR 116


>gi|282165125|ref|YP_003357510.1| hypothetical protein MCP_2455 [Methanocella paludicola SANAE]
 gi|282157439|dbj|BAI62527.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 213

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            + A++   G+ +E  CG G F+ V+A +   VLA +++   V+AAR N+    ++NV  
Sbjct: 36  AILASEHDPGNAVEFGCGTGYFTRVIAGNAKHVLATDMSPGMVDAARSNLR--DLHNVSF 93

Query: 262 VRMSSK 267
               S+
Sbjct: 94  QVQDSE 99


>gi|219848628|ref|YP_002463061.1| ribosomal protein L11 methyltransferase [Chloroflexus aggregans DSM
           9485]
 gi|219542887|gb|ACL24625.1| ribosomal protein L11 methyltransferase [Chloroflexus aggregans DSM
           9485]
          Length = 327

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L         +L+L  G+G  ++  A+     VLA++    +V  A+ N+  N VN V
Sbjct: 159 QLLERMVQPDQHVLDLGTGSGILAIAAAKLGAGHVLALDNDPIAVRVAQENVERNQVNAV 218

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
             V   S    QAM      +        + R +T     P++  D     ++      +
Sbjct: 219 VQVAEGSLGVGQAMGHWLSGDFGPAEPDPALRAQT-----PQAIFDLIAANLIAK----V 269

Query: 320 YISCNPDSLCRDL--SILSTTHTI 341
            +     +L  DL  ++    + I
Sbjct: 270 LV-----TLAPDLAAALKPGGYLI 288


>gi|116199927|ref|XP_001225775.1| hypothetical protein CHGG_08119 [Chaetomium globosum CBS 148.51]
 gi|88179398|gb|EAQ86866.1| hypothetical protein CHGG_08119 [Chaetomium globosum CBS 148.51]
          Length = 606

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 23/46 (50%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
               L+LY G G F+  LAR   RVL  E+   SVE  R   AAN 
Sbjct: 505 NKHALDLYAGIGYFAFPLARLGLRVLCWELNAWSVEGLRRGAAANG 550


>gi|114330226|ref|YP_746448.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosomonas eutropha C91]
 gi|114307240|gb|ABI58483.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosomonas eutropha C91]
          Length = 218

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +          +LE+  G G  + +LA+    V +VEI       AR N+ A+ + N+ +
Sbjct: 71  LQELNINKTDKILEVGTGTGYMTALLAKLGAHVYSVEIVPELHAMARINLQAHDITNITL 130

Query: 262 VRMSSK 267
            +  + 
Sbjct: 131 EQGDAA 136


>gi|332842374|ref|XP_522871.2| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase [Pan troglodytes]
          Length = 509

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 97/273 (35%), Gaps = 24/273 (8%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + +F   +  K  + +   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 143 YKIFTHDSFEKAELSVLEQLNVSPQISKYNLELTYENFKSEEILRAVLPEGQDVTS--GF 200

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT---- 172
           + +  I H  L D        +   +  +   I            + R++  E L+    
Sbjct: 201 SRIGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQN 260

Query: 173 ----VAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
               V      Y   E  F++   N  ++    E          GD+L +++ G G F++
Sbjct: 261 MMTKVRENNYTY---EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAI 314

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKD 284
            +A+    V A ++   S +   YN   N V+  VK+  +  K+F Q   +E     L  
Sbjct: 315 PVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGL 374

Query: 285 IDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP 316
                     +   P ++     A   ++   P
Sbjct: 375 SKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQP 407


>gi|163792498|ref|ZP_02186475.1| methyltransferase, UbiE/COQ5 family protein [alpha proteobacterium
           BAL199]
 gi|159182203|gb|EDP66712.1| methyltransferase, UbiE/COQ5 family protein [alpha proteobacterium
           BAL199]
          Length = 217

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +LLE  CG G+ +L LA    R+ A++I+   V  AR    ++ V NV  +R +  +F
Sbjct: 52  ELLEFGCGTGSTALALAPDVARITAIDISSKMVGIARRKAESSGVANVAFLRAAIDDF 109


>gi|218531357|ref|YP_002422173.1| methyltransferase small [Methylobacterium chloromethanicum CM4]
 gi|218523660|gb|ACK84245.1| methyltransferase small [Methylobacterium chloromethanicum CM4]
          Length = 250

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARY 249
           AG +  +L  +LA   G    L +L    G   L +AR     RV+ VE     V  AR 
Sbjct: 25  AGTDAVLLARLLAPAPGAT--LYDLGAATGAVGLAVARLCEVGRVVLVERDPDLVALARE 82

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N AAN ++  ++  + +       +R           +       +  +PP
Sbjct: 83  NAAANGLD-ARVAVIEADILAPGAQRR-------AAGMEPDSADIVLTNPP 125


>gi|50083338|ref|YP_044848.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter sp. ADP1]
 gi|57013199|sp|Q6FFY1|UBIG_ACIAD RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|49529314|emb|CAG67026.1| 3-demethylubiquinone-9 3-methyltransferase and
           2-octaprenyl-6-hydroxy phenol methylase [Acinetobacter
           sp. ADP1]
          Length = 238

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +  AR +
Sbjct: 32  HQINPLRLNWIDEHAGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLNVARLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
                V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AEQEQVANIEYRQIPVEELAQEQAGQYDIVTCMEMMEHVPDPASII 137


>gi|315053831|ref|XP_003176290.1| hypothetical protein MGYG_00377 [Arthroderma gypseum CBS 118893]
 gi|311338136|gb|EFQ97338.1| hypothetical protein MGYG_00377 [Arthroderma gypseum CBS 118893]
          Length = 234

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 37/114 (32%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           W           +L+  CG G+ +  L  H   V+ ++I++  VE    NI A  +   K
Sbjct: 45  WADMTGNAKSFRMLDYACGAGSMTRALLSHVSEVIGIDISQNMVEEYNKNITALGLPADK 104

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +        ++    E       + D+    F     + P   +      +   
Sbjct: 105 MFAKKGNLLSEKPSEEFSEPEYFNFDLVIIGFALHHFESPAFAMKRLVERLAPG 158


>gi|269217493|ref|ZP_06161347.1| methyltransferase small domain protein [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269213114|gb|EEZ79454.1| methyltransferase small domain protein [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 679

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            G    +L++  G G  +++ A    RV A +++  ++  AR+N A      +   R S 
Sbjct: 253 YGADERVLDVRTGCGYHAILAALCGARVTATDVSARALGYARFNAALAGAE-IDFRRGSL 311

Query: 267 KEFT--QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            E             + L        R+  +  +PP     +A   
Sbjct: 312 LEPVRGPRFDLADAVDSLDSWSAARERYDVVVSNPPFVITPEAARA 357


>gi|37678295|ref|NP_932904.1| N6-adenine-specific methylase [Vibrio vulnificus YJ016]
 gi|320154973|ref|YP_004187352.1| methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|326423802|ref|NP_760098.2| ribosomal RNA small subunit methyltransferase D [Vibrio vulnificus
           CMCP6]
 gi|37197034|dbj|BAC92875.1| N6-adenine-specific methylase [Vibrio vulnificus YJ016]
 gi|319930285|gb|ADV85149.1| methyltransferase [Vibrio vulnificus MO6-24/O]
 gi|319999170|gb|AAO09625.2| Ribosomal RNA small subunit methyltransferase D [Vibrio vulnificus
           CMCP6]
          Length = 197

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       +   L+L+ G+G       +R  ++V  +E+   +    + N+ 
Sbjct: 46  VKETLFNWLAQDIP--RARCLDLFAGSGGLGFEAASRQAEQVTMLELNPKAFAQLQQNVT 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           A   NN+K+++  + +F +                       +F+DPP R GL    V +
Sbjct: 104 ALKANNIKVIQGDALQFLKQ---------------QGTPHHVVFIDPPFRQGLLAEAVTL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LEQNGWLAEDAMIYI 163


>gi|312887827|ref|ZP_07747414.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Mucilaginibacter paludis DSM 18603]
 gi|311299646|gb|EFQ76728.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Mucilaginibacter paludis DSM 18603]
          Length = 290

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 11/88 (12%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF--DRVLAV 237
            Q N  +         ++EW++ A +       +L++  G+G   + L +H     V A+
Sbjct: 91  FQVNPSVLIPRPETEELVEWIIQAAQERHQQEAILDIGTGSGCIPVKLKKHLPDAEVSAI 150

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +I+  +++ A+ N   N V+ V  +   
Sbjct: 151 DISPAALQTAKQNATLNGVD-VAFIEAD 177


>gi|206891037|ref|YP_002248217.1| HemK family protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742975|gb|ACI22032.1| HemK family protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 279

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 195 NVHMLEWVLAATK---GIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARY 249
              ++E VL   K        +L+L  G+G  +L + ++     +  ++ ++ +V+ A  
Sbjct: 91  TEILVEQVLERQKLISNTGNRILDLCTGSGCIALAIGKNAPEFQIFGIDKSEKAVKYATE 150

Query: 250 NIAANHVNNVKIVRMSS 266
           N A N++ NV  +    
Sbjct: 151 NKALNNIKNVIFLVGDM 167


>gi|119961880|ref|YP_947365.1| methyltransferase small subunit [Arthrobacter aurescens TC1]
 gi|119948739|gb|ABM07650.1| putative methyltransferase small domain protein [Arthrobacter
           aurescens TC1]
          Length = 204

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 24/122 (19%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVL---ARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
                   +G LL++ CG G  +L L   A H   V AV++ +  +     N  A  + N
Sbjct: 52  AEVPPPSPKGHLLDIGCGWGPIALTLGLMAPHA-HVHAVDVNERCIALTNENATALGLTN 110

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPH 317
           V                      L      +  F TI+ +PP R G D+    ++   P 
Sbjct: 111 VAA-------------------SLPHEVDPAVEFDTIWSNPPIRIGKDELHSLLLTWLPR 151

Query: 318 IL 319
           + 
Sbjct: 152 LA 153


>gi|330965059|gb|EGH65319.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 398

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 83/288 (28%), Gaps = 57/288 (19%)

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHR 125
            I   +  SLL++ + + +     +  +P  R      D L      +    +V  +   
Sbjct: 73  DIKLALDKSLLVHRINVALSLRERLFDKPFYRLVFGDSDLLPGLVVDRFGDILVVQLASA 132

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDYVDERLTVAGRTL 178
            +++  ++    L   +       +    A          +       V E + +    +
Sbjct: 133 TMENHKKDIIAALVQVIKPSGILFKNDSAARDAEGLNRYVETVFG--LVPEWVALEENGV 190

Query: 179 IYRQIENS------FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHF 231
            +     +      F         H +     A       +L+LY   G + +   A   
Sbjct: 191 KFEAPVTAGQKTGWFY-------DHRMNRARIAPYVKGKRVLDLYSYIGGWGIQAAAFGA 243

Query: 232 DRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             V  V+ +  +++    N A N     +  +                F  LK++     
Sbjct: 244 SDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDV------------FEALKELKAGEE 291

Query: 291 RFKTIFVDPPRSG---------------LDDATVGMVQAYPHILYISC 323
           RF  I  DPP                  L++  + ++     ++  SC
Sbjct: 292 RFDVIVADPPAFIKRKKDMKNGEGAYRRLNEQAMRLLSKDGILISASC 339


>gi|283779451|ref|YP_003370206.1| hypothetical protein Psta_1671 [Pirellula staleyi DSM 6068]
 gi|283437904|gb|ADB16346.1| protein of unknown function Met10 [Pirellula staleyi DSM 6068]
          Length = 428

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 17/104 (16%)

Query: 210 QGDLLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
              +L+L C  G F++  A+       V+ V++ +  ++ A+ N   N V   + V+  +
Sbjct: 239 DKTVLDLCCYTGGFAVQ-AKKLGGASEVIGVDLDEEPLKLAKENANLNQVR-CRFVQADA 296

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                       F  ++D+     +F  + +DPP+     A + 
Sbjct: 297 ------------FAYMRDMQSSGRKFDVVVLDPPKLIRSRAEIE 328


>gi|259047254|ref|ZP_05737655.1| methyltransferase domain protein [Granulicatella adiacens ATCC
           49175]
 gi|259036304|gb|EEW37559.1| methyltransferase domain protein [Granulicatella adiacens ATCC
           49175]
          Length = 206

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 20/127 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
             ++E     +   +G LL++ CG G   L  A+ +    V  V++ + ++E AR N  A
Sbjct: 48  QLLIESYEVPSSFQEGKLLDVGCGYGPMGLSFAKAYPKMHVEMVDVNERALELARRNAKA 107

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMV 312
           N + NV I   S  +                 +I++  +  I  +PP R+G +     + 
Sbjct: 108 NGIENVLIHESSIYD-----------------EINAKDYSVIISNPPIRAGKEVVHRILE 150

Query: 313 QAYPHIL 319
           +AY H++
Sbjct: 151 EAYDHLI 157


>gi|15837009|ref|NP_297697.1| hypothetical protein XF0407 [Xylella fastidiosa 9a5c]
 gi|9105245|gb|AAF83217.1|AE003892_2 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 389

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 27/156 (17%)

Query: 168 DERLTVAGRTLIYRQIE-----NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            E + +    + +           F            +W+     G    +L+L C  G 
Sbjct: 175 TESVVITEHGVKFLVDPMGAHKTGFF----ADQRENRQWLSQGVAGKT--VLDLCCNTGG 228

Query: 223 FSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           F++  A R    V+ V+I +  ++ A+ N   N                    +   F  
Sbjct: 229 FAVYAALRGAADVVGVDIDQDVIQIAKANAKLNS-------------VRPKFLQADIFPY 275

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           L+D  +   ++  + +DP +   D     ++ A   
Sbjct: 276 LRDAAVRGDQYDVVILDPAKMTRDRD--QIINALKK 309


>gi|21223465|ref|NP_629244.1| methyltransferase [Streptomyces coelicolor A3(2)]
 gi|5541919|emb|CAB51133.1| putative methyltransferase [Streptomyces coelicolor A3(2)]
 gi|14717101|emb|CAC44207.1| putative methyltransferase [Streptomyces coelicolor A3(2)]
          Length = 208

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/224 (21%), Positives = 78/224 (34%), Gaps = 53/224 (23%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           +T        R   ++        NV ++E V   T    GD L+L CG+G  +L LAR 
Sbjct: 7   VTFWDGVYAARPAPDA-----PRPNVRLVETV---TGLPPGDALDLGCGSGGDALWLARR 58

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
             RV AV+I+  + E    +   + + + V  VR   ++     R           D+ S
Sbjct: 59  GWRVTAVDISGVAAERLAGHARTHGLGDLVDAVRHDLRDSFPEGR----------FDLVS 108

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPHILYI---SCNPDSL--------------CRDL 332
             +     D  R+ +       ++    +L +   S  P S                 DL
Sbjct: 109 AHYLHTPFDLDRASVLRGAAHALRPGGRLLVVDHGSTAPWSWDQDPDARHPAPQEVAADL 168

Query: 333 SILSTTHTIERLALFDQFP---------YTRHMECG--VLLVRK 365
           ++   T  +ER       P          T   E    VLLVR+
Sbjct: 169 ALDPATWRVERAEA----PRRTATGPGGRTA--EVVDHVLLVRR 206


>gi|297695247|ref|XP_002824859.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Pongo
           abelii]
          Length = 509

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 97/273 (35%), Gaps = 24/273 (8%)

Query: 60  HIMFDQQT--KERMRIDYFMPGSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQ 116
           + +F   +  K  + +   +  S  I+   +E+     + E +LRA L +   +TS    
Sbjct: 143 YKIFTHDSFEKAELSVLEQLNVSPQISTYNLELTYENFKSEEILRAVLPEGQEVTS--GF 200

Query: 117 AIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT---- 172
           + V  I H  L D        +   +  +   I            + R++  E L+    
Sbjct: 201 SRVGHIAHLNLRDHQLPFKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQN 260

Query: 173 ----VAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSL 225
               V      Y   E  F++   N  ++    E          GD+L +++ G G F++
Sbjct: 261 MMTKVRENNYTY---EFDFSKVYWNPRLST---EHSRITELLKPGDVLFDVFAGVGPFAI 314

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKD 284
            +A+    V A ++   S +   YN   N V+  VK+  +  K+F Q   +E     L  
Sbjct: 315 PVAKKNCTVFANDLNPESHKWLLYNCKLNKVDQKVKVFNLDGKDFLQGPVKEELMQLLGL 374

Query: 285 IDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYP 316
                     +   P ++     A   ++   P
Sbjct: 375 SKERKPSVHVVMNLPAKAIEFLSAFKWLLDGQP 407


>gi|294506164|ref|YP_003570222.1| RNA methylase family UPF0020 [Salinibacter ruber M8]
 gi|294342492|emb|CBH23270.1| Putative RNA methylase family UPF0020 [Salinibacter ruber M8]
          Length = 247

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV 256
           MLE   AA       +++L  G+G   +  A RH  R + VEI    +  AR N  A  V
Sbjct: 92  MLE---AAQVTSDDVVIDLGSGDGRIPIAAAQRHGARGIGVEIDPELIAKARENAEAAGV 148

Query: 257 NN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           ++ V+  +    E   +           +I++         +DP    +    
Sbjct: 149 SDLVEFRQGDLFEADLSEATVVTLYLWPEINVKLRPKLLRTLDPGDRIVSHDF 201


>gi|282879566|ref|ZP_06288297.1| ribosomal protein L11 methyltransferase [Prevotella timonensis CRIS
           5C-B1]
 gi|281306514|gb|EFA98543.1| ribosomal protein L11 methyltransferase [Prevotella timonensis CRIS
           5C-B1]
          Length = 288

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARY 249
           N      M+  +L      +  +L+  CG G  S+  ++   ++V+  +I + SV    +
Sbjct: 132 NHQTTRMMISMLLKLRL-SEKRVLDCGCGTGILSIAASKLGANKVIGYDIDEWSVNNTLH 190

Query: 250 NIAANHVNNVKIVRMSS 266
           N   N+V N+++   ++
Sbjct: 191 NATMNNVTNLEVFHGNA 207


>gi|258542221|ref|YP_003187654.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633299|dbj|BAH99274.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636358|dbj|BAI02327.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639411|dbj|BAI05373.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642467|dbj|BAI08422.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645522|dbj|BAI11470.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648575|dbj|BAI14516.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651628|dbj|BAI17562.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654619|dbj|BAI20546.1| 3-demethylubiquinone-9 3-methyltransferase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 246

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 24/156 (15%)

Query: 192 AGINVHMLEWV-----LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
             +N   +EW      L   K  +  +L++ CG G  S  LA+    VL ++ +   + A
Sbjct: 38  HAMNGLRIEWASRHLPLRGRKSRRPHVLDIGCGAGLASEALAKAGYDVLGLDASANGIAA 97

Query: 247 ARYNIAAN----HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           A+ ++ AN        +   + S++E      +      L +I  H    +   +     
Sbjct: 98  AQAHLEANPLPAGSGTLHYRQGSAEELVAEHAKFDAVMAL-EIIEHVTDPEAFMIM---- 152

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT 338
                   +V A   ++ +S    ++ R L  L+  
Sbjct: 153 -----LAQLVDANGTVI-VS----TMNRTLRSLAVG 178


>gi|289578109|ref|YP_003476736.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           italicus Ab9]
 gi|289527822|gb|ADD02174.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           italicus Ab9]
          Length = 308

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 74/223 (33%), Gaps = 37/223 (16%)

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
           YF   S  I+ + I +   I         +   D   S+ D+            + W   
Sbjct: 66  YFPIASDTIDKINI-LKDRIVELKSFGIDIGNFDLKVSEVDE------------EDWANN 112

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
             +    L                KI + +   +E ++     +I      +F       
Sbjct: 113 WKQYYKPLKI------------GKKIVI-KPSWEEYVSQGEEIIIELDPGMAFG-TGTHE 158

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M   +L      +  + ++ CG+G  S+  ++     V A +I + SVE AR N+  
Sbjct: 159 TTKMCLELLEEIVMPESIVFDIGCGSGILSIASSKLGAKEVYAADIDEVSVEVARQNVEL 218

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           N++ NVK+ +              EF+   DI + +     I 
Sbjct: 219 NNLQNVKVFKSDL---------LNEFDGKADIIVANIIADVII 252


>gi|237731779|ref|ZP_04562260.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Citrobacter sp. 30_2]
 gi|226907318|gb|EEH93236.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Citrobacter sp. 30_2]
          Length = 277

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPASACRILDLGTGTGAIALALATERPDCAVTAVDRMPDAVALAIRNKQQLG 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +NNV +++ +                     +   +F  I  +PP
Sbjct: 158 INNVCVLQSN-----------------WFSALQGQQFDMIVSNPP 185


>gi|219849890|ref|YP_002464323.1| putative SAM-dependent methyltransferase [Chloroflexus aggregans
           DSM 9485]
 gi|219544149|gb|ACL25887.1| putative SAM-dependent methyltransferase [Chloroflexus aggregans
           DSM 9485]
          Length = 298

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 20/130 (15%)

Query: 200 EWVLAATKGI-QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           EW+    +   Q   L L+   G  SL LARH   V  V+ +KP+V  A+ N A   + +
Sbjct: 110 EWLAQQVRRRNQPRALVLFGYTGLSSLHLARHGAHVTHVDASKPAVRWAQENQALAELTD 169

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------LDDATV 309
            + +R    +  + + RE              R+  I +DPP  G         L +   
Sbjct: 170 -RPIRWLIDDVGKFVARELR---------RGNRYDLILLDPPVFGRGPNGEIWRLHEQLP 219

Query: 310 GMVQAYPHIL 319
            ++     +L
Sbjct: 220 TLLAQCARLL 229


>gi|149907579|ref|ZP_01896326.1| peptide release factor-glutamine N5-methyltransferase [Moritella
           sp. PE36]
 gi|149809249|gb|EDM69178.1| peptide release factor-glutamine N5-methyltransferase [Moritella
           sp. PE36]
          Length = 279

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 30/154 (19%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I   R++    L V+  TLI R                ++E  LA        +L+L  G
Sbjct: 72  ILGYREFWSLELEVSADTLIPRPD-----------TEILVEQALACMPTHACQVLDLGTG 120

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L LA       V A+E  + +   AR N+     + V +++ S            
Sbjct: 121 TGAIALALASESPQATVTAIEYQQGAAALARRNVKRCGFD-VTVLQGS------------ 167

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                 +    S RF  I  +PP     D  + M
Sbjct: 168 ----WFEPLKASQRFDVIVSNPPYIDAHDPHLAM 197


>gi|94496055|ref|ZP_01302634.1| SAM-dependent methyltransferase [Sphingomonas sp. SKA58]
 gi|94424747|gb|EAT09769.1| SAM-dependent methyltransferase [Sphingomonas sp. SKA58]
          Length = 289

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 22/189 (11%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           R +    +       D   A    I         +   ++    E   +  + + ++   
Sbjct: 32  RFIRPEPQAMWQPASDDWRADGEFIPGSDEDGGGRWYYEQPVPVEGWPLHWKEVTFQSSC 91

Query: 185 N-----SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
                  F    A +   +   +         +++ L+   G  +L L+    R++ V+ 
Sbjct: 92  TPFRHLGFFPDMAPVWDDLRGSIADK---PDAEVMNLFGYTGVGTLALSAGGARMVHVDA 148

Query: 240 AKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +K SV  AR N A + + +  V+ +   + +F     R               R+  I +
Sbjct: 149 SKKSVAQARANAALSGMEDRPVRWIVEDAAKFVAREVR------------RGRRYDGILL 196

Query: 298 DPPRSGLDD 306
           DPP+ G   
Sbjct: 197 DPPKYGRGP 205


>gi|330993136|ref|ZP_08317074.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           sp. SXCC-1]
 gi|329759906|gb|EGG76412.1| Ribosomal RNA small subunit methyltransferase B [Gluconacetobacter
           sp. SXCC-1]
          Length = 395

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 20/143 (13%)

Query: 201 WVLAATKGIQGDLLELYCGN---------GNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           WV      +   LL++  G          G  +  LA     V A+E     +E  R N+
Sbjct: 187 WVQDMAASLPARLLDVKPGERVADLCAAPGGKTAQLACAGAEVFAIEREGRRIERLRANL 246

Query: 252 AANHVNNVKIVRMSSKEFTQAMR-----------REREFNRLKDIDIHSYRFKTIFVDPP 300
           A   +  V ++   +  +   M                  R  D            +   
Sbjct: 247 ARLGLGGVHVIHADAATWRPEMPLDAILLDAPCSATGTIRRHPDAMWIKRPRDIATMTEG 306

Query: 301 RSGLDDATVGMVQAYPHILYISC 323
           +  L  A   M++    ++Y  C
Sbjct: 307 QDRLLAAARDMLRPGGRLVYAVC 329


>gi|326800442|ref|YP_004318261.1| ribosomal protein L11 methyltransferase [Sphingobacterium sp. 21]
 gi|326551206|gb|ADZ79591.1| Ribosomal protein L11 methyltransferase [Sphingobacterium sp. 21]
          Length = 292

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 148 QIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIEN---SFTQPNAGINVHMLEWVL 203
               +  +N   I +D R YV            Y  I +   +F   +      M+E++L
Sbjct: 87  NWNAVWESNFEPITVDKRCYVRATFHAPKPDFEYEIIIDPKMAFGTGHHQTTSLMMEYLL 146

Query: 204 AATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            +    +  +L++ CG G  +++ A+   + V+A++      E+ + NI  N V  +KI 
Sbjct: 147 DSHVAGK-RVLDMGCGTGILAILAAKIGAEEVVAIDYDPVCYESVKENIELNQVPAIKIY 205

Query: 263 RMSSKEFTQ 271
             S +   Q
Sbjct: 206 CGSKEVIPQ 214


>gi|262369774|ref|ZP_06063102.1| methyl transferase [Acinetobacter johnsonii SH046]
 gi|262315842|gb|EEY96881.1| methyl transferase [Acinetobacter johnsonii SH046]
          Length = 272

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 19/125 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E VL         +++L  G G  +L LA  R    + A +I +P++  A+ N  
Sbjct: 92  TEVLVETVLRLDLPEDARIVDLGTGTGAVALSLACERDTWDITATDIYEPTLAVAQQNAE 151

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            + +N+V  V  S   F    R+                F  I  +PP    DDA +  +
Sbjct: 152 KHDLNDVTFVCGS--WFAPLNRKF---------------FDVIVSNPPYIDADDAHMQDL 194

Query: 313 QAYPH 317
              P 
Sbjct: 195 ATEPE 199


>gi|260654407|ref|ZP_05859897.1| putative precorrin-6y methylase [Jonquetella anthropi E3_33 E1]
 gi|260631040|gb|EEX49234.1| putative precorrin-6y methylase [Jonquetella anthropi E3_33 E1]
          Length = 409

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFS--LVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
             +L+      GD+L ++  G G+ S  L LA     V AVE     +E  R N AA   
Sbjct: 239 AQILSLLAPQPGDVLWDVGAGTGSVSVELALAAPEGIVWAVEREPEGIELIRANAAALRA 298

Query: 257 NNVKIVRMSSKEFTQAMRRER 277
            NVK+V  ++ E  +A+    
Sbjct: 299 YNVKVVAGTAPEALEALPSPD 319


>gi|229550582|ref|ZP_04439307.1| methyltransferase [Enterococcus faecalis ATCC 29200]
 gi|229304301|gb|EEN70297.1| methyltransferase [Enterococcus faecalis ATCC 29200]
          Length = 202

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWKNLPAGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA    R V  V++ + +V  A+ N   N +  V I   +  E            
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYE------------ 119

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 ++   +  I  +PP         G++  
Sbjct: 120 -----TLNETTYAAIVSNPPIRAGKKVVHGILTG 148


>gi|315231215|ref|YP_004071651.1| UbiE/COQ5-like methyltransferase [Thermococcus barophilus MP]
 gi|315184243|gb|ADT84428.1| UbiE/COQ5-like methyltransferase [Thermococcus barophilus MP]
          Length = 247

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 199 LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +E++L   +  +G  +L++ CG G  S+ LA+   RV  ++I++  +E AR       V 
Sbjct: 30  VEFLLNEFQLPKGAKILDVGCGVGRHSIELAKRGYRVTGIDISQGMLEEARKRAQKEGVE 89

Query: 258 NVKIVRMSSKEF 269
            V+ ++  + +F
Sbjct: 90  -VEFIKADATKF 100


>gi|319427361|gb|ADV55435.1| PUA domain containing protein [Shewanella putrefaciens 200]
          Length = 396

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 30/159 (18%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV--N 257
             +AA       +L  +C  G F L  A+     +  V+++  ++  AR N+  N +  +
Sbjct: 212 RAIAARFVKDKSVLNCFCYTGTFGLYAAKAGAASIENVDVSSLALSTARLNMQVNGLSDD 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYP 316
           NV        +  +  R E               F  I +DPP+   + A + G  + Y 
Sbjct: 272 NVHYNEADVFKLLRQYRDE------------GKTFDVIVLDPPKFADNKAQLNGACRGYK 319

Query: 317 HILYISCNPDSLCRDLSILSTT-----HTIERLALFDQF 350
            I  I+         L +L+        +   L   D F
Sbjct: 320 DINMIA---------LQLLNPGGVLLTFSCSGLMPADLF 349


>gi|282878591|ref|ZP_06287369.1| ribosomal protein L11 methyltransferase [Prevotella buccalis ATCC
           35310]
 gi|281299291|gb|EFA91682.1| ribosomal protein L11 methyltransferase [Prevotella buccalis ATCC
           35310]
          Length = 287

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAA 253
              M+   +         +L+  CG G   +  L    + V+  +I + SVE  ++N A 
Sbjct: 135 TTRMMIGAMLQLSLKGKRVLDSGCGTGILGIAALKLGAEAVVGFDIDEWSVENTQHNAAI 194

Query: 254 NHVNNVKIVRMSS 266
           N V+N+++    +
Sbjct: 195 NEVDNIEVFHGDA 207


>gi|225626690|ref|ZP_03784729.1| SAM dependent methyltransferase [Brucella ceti str. Cudo]
 gi|225618347|gb|EEH15390.1| SAM dependent methyltransferase [Brucella ceti str. Cudo]
          Length = 385

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 27/186 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 163 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 220

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRERE 278
           G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R   
Sbjct: 221 GVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREERRGS 280

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILS 336
           F            +  I +DPP  G         + +  P ++  +C      + L+++ 
Sbjct: 281 F------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAVIL 327

Query: 337 TTHTIE 342
           T ++I 
Sbjct: 328 TAYSIR 333


>gi|329942535|ref|ZP_08291345.1| TRNA/rRNA methyltransferase [Chlamydophila psittaci Cal10]
 gi|332287167|ref|YP_004422068.1| putative SAM-dependent methyltransferase [Chlamydophila psittaci
           6BC]
 gi|313847763|emb|CBY16753.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|325507103|gb|ADZ18741.1| putative SAM-dependent methyltransferase [Chlamydophila psittaci
           6BC]
 gi|328815445|gb|EGF85433.1| TRNA/rRNA methyltransferase [Chlamydophila psittaci Cal10]
 gi|328914412|gb|AEB55245.1| sam dependent methyltransferase [Chlamydophila psittaci 6BC]
          Length = 274

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 21/140 (15%)

Query: 165 DYVDERLTVAGRTLIYRQIENS-FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           D VD  L +     I    E+S F            E  L+  +     +L L+   G+ 
Sbjct: 70  DIVDCTLKLTSFGHIGIFPEHSGFWP----------ELKLSIERHSSCRVLNLFAYTGST 119

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           S+  A+   +V  V+ +KP+++ A+ N+  N +   +I              E  F+ L+
Sbjct: 120 SIFAAKCGAKVCHVDASKPAIKWAQKNVENNALPEKRIF----------WVVEDVFSFLQ 169

Query: 284 DIDIHSYRFKTIFVDPPRSG 303
                  ++  I +DPP  G
Sbjct: 170 KEIRKGKKYDIILLDPPTYG 189


>gi|311898377|dbj|BAJ30785.1| putative protein methyltransferase HemK [Kitasatospora setae
           KM-6054]
          Length = 288

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 18/132 (13%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI---QGDLLELYCGNGNFSLVLARH 230
             R L        F          ++EW + A + +   +  +++L  G+G  +L LA+ 
Sbjct: 75  FFRYLELEVGPGVF--VPRPETESVVEWAIDAVRAMDVAEPLVVDLCTGSGAIALALAQE 132

Query: 231 FDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
             R  V A E+ + ++   R N+ A    +   V +   + TQA   +R ++        
Sbjct: 133 LPRSTVHAFELDEGALAYTRRNVEA--SPDRARVHLHQGDATQAFADDRGWD-------- 182

Query: 289 SYRFKTIFVDPP 300
             RF  +  +PP
Sbjct: 183 -GRFDLVISNPP 193


>gi|167627297|ref|YP_001677797.1| HemK family modification methylase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597298|gb|ABZ87296.1| modification methylase, HemK family [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 285

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 32/155 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
           I   + + +++L V   TLI R                ++  VL   +     L  L+L 
Sbjct: 75  ILGYKYFWNQKLYVTKDTLIPR-----------ADTEAVVAAVLDDIQDKNAQLKILDLG 123

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G+G  +L LA      +V+AV++   +++ A+ N  AN + NV        EF Q+   
Sbjct: 124 TGSGAIALALAEELPKSQVVAVDLYSKTLDVAKKNALANKIVNV--------EFMQSSWY 175

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           E         ++ + +F  I  +PP   +DDA + 
Sbjct: 176 E---------NLDATKFDIIVSNPPYIDVDDANID 201


>gi|50954443|ref|YP_061731.1| methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950925|gb|AAT88626.1| methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 292

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 17/101 (16%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
            L A    +  + +L  G+G  +L LA      RV AVE +  +   +R NI A    NV
Sbjct: 116 ALRAVPSPEPIVADLGTGSGAIALALATEVPHARVFAVENSPEAFVWSRRNIDAAGAPNV 175

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + V     +    +                     +  +PP
Sbjct: 176 RAVFADLADALPDLDGAV---------------DVVISNPP 201


>gi|271966421|ref|YP_003340617.1| type 12 methyltransferase [Streptosporangium roseum DSM 43021]
 gi|270509596|gb|ACZ87874.1| methyltransferase type 12 [Streptosporangium roseum DSM 43021]
          Length = 226

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A +N  + E       G     L+L CG G  ++ LAR    V AV+I+  +VE  R   
Sbjct: 40  ARVNPLLAETAAPLRPGAA---LDLGCGAGGDAIWLARRGWHVTAVDISTTAVERVRERA 96

Query: 252 AANHVNNV 259
               + ++
Sbjct: 97  RDLGIADL 104


>gi|116333247|ref|YP_794774.1| 16S RNA G1207 methylase RsmC [Lactobacillus brevis ATCC 367]
 gi|116098594|gb|ABJ63743.1| 16S RNA G1207 methylase RsmC [Lactobacillus brevis ATCC 367]
          Length = 203

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 20/146 (13%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
            T+ G  L++      F++        +L     A K   G  L+L  G G   L LA+ 
Sbjct: 21  FTLLGNELLFTTDNGVFSKNRVDYGSRVLLEAFNAAKTPAGSWLDLGTGYGPIGLALAKR 80

Query: 231 --FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               +V  V++ + ++E AR N  AN + NV+I                        D  
Sbjct: 81  WPDRQVTMVDVNELALELARKNATANQIENVEIKTSD------------------IYDQV 122

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQA 314
           + R+  I  +PP          M+  
Sbjct: 123 TQRYAAILTNPPVRAGKQVVTAMLTG 148


>gi|313245968|emb|CBY34942.1| unnamed protein product [Oikopleura dioica]
          Length = 394

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 186 SFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           S+       I  H+ E            +++ +CG G  ++  A   +RV+A++I    +
Sbjct: 172 SWFSVTPEKIAEHIAERCRCEL------IVDGFCGVGGNAIQFAFTCERVIAIDIDPEKI 225

Query: 245 EAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           E A++N A   V + ++ +     +   ++R +  F         +Y  + IF      G
Sbjct: 226 EMAKHNAAIYGVEDRIEFIVGDYFKIIPSLRPDVVF-LSPPWGGPAYLDQDIFDLKDMGG 284

Query: 304 LDDATVGMVQAYP--HILY 320
           +D   +  V      +I Y
Sbjct: 285 MDGLEIYRVAKERTDNIAY 303


>gi|242398066|ref|YP_002993490.1| Predicted DNA methylase [Thermococcus sibiricus MM 739]
 gi|242264459|gb|ACS89141.1| Predicted DNA methylase [Thermococcus sibiricus MM 739]
          Length = 205

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 22/109 (20%)

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNI 251
           +   +L W+  +   I+G ++ +L  G G  S+  +     +V AVE  K ++E A+ N 
Sbjct: 32  VAAELL-WLAHSMGDIEGKIIADLGAGTGVLSIGASLMGAKKVYAVEKDKKALEIAKENA 90

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              ++ N++ + +S KEF                     R  T+ ++PP
Sbjct: 91  ETLNIKNIEFLEVSVKEF-------------------DARVDTVIMNPP 120


>gi|269125397|ref|YP_003298767.1| type 11 methyltransferase [Thermomonospora curvata DSM 43183]
 gi|268310355|gb|ACY96729.1| Methyltransferase type 11 [Thermomonospora curvata DSM 43183]
          Length = 337

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V          +++L CG G FS  +A    +VL ++ +   +  A           +  
Sbjct: 23  VDLLDPQPDERIIDLGCGTGVFSAAIAERGAQVLGIDGSPEMIAQAAAT-----YPQLSF 77

Query: 262 VRMSSKEFT 270
           V   + +FT
Sbjct: 78  VVADAHDFT 86


>gi|306813890|ref|ZP_07448063.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli NC101]
 gi|222033011|emb|CAP75751.1| Protein methyltransferase hemK [Escherichia coli LF82]
 gi|305852527|gb|EFM52975.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli NC101]
 gi|312945842|gb|ADR26669.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|320195778|gb|EFW70403.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli WV_060327]
 gi|324005999|gb|EGB75218.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 57-2]
          Length = 277

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|152965470|ref|YP_001361254.1| methyltransferase small [Kineococcus radiotolerans SRS30216]
 gi|151359987|gb|ABS02990.1| methyltransferase small [Kineococcus radiotolerans SRS30216]
          Length = 202

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 28/131 (21%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARY 249
             + + ++E   AA     GD+L+L CG G  +L LA    R  V AV++ + +++  R+
Sbjct: 47  TAVLLPLIEDADAA-----GDVLDLGCGWGPIALSLALRRPRQVVHAVDVNERALDLLRH 101

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDAT 308
           N A   V     VR S                L D      RF  I+ +PP R G +   
Sbjct: 102 NAARLGVA----VRAS----------------LPDEVDEDLRFTEIWSNPPIRIGKEALH 141

Query: 309 VGMVQAYPHIL 319
             +++  P + 
Sbjct: 142 DLLLRWLPRLA 152


>gi|150403386|ref|YP_001330680.1| type 11 methyltransferase [Methanococcus maripaludis C7]
 gi|150034416|gb|ABR66529.1| Methyltransferase type 11 [Methanococcus maripaludis C7]
          Length = 280

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           ++   +F   N+  N    ++++          +L++  G G  ++ +A     V AVE 
Sbjct: 36  KEAARAFL-NNSFANPERKQFIIDSLPLSPDSRVLDIGSGPGTIAVPVAGRVKHVTAVEP 94

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +    +      A N V+N+ IVR   +E   +
Sbjct: 95  SHGMADVMEEYAAENGVSNLDIVRKRWEELDPS 127


>gi|150399663|ref|YP_001323430.1| methyltransferase small [Methanococcus vannielii SB]
 gi|150012366|gb|ABR54818.1| methyltransferase small [Methanococcus vannielii SB]
          Length = 260

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 3/119 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +  +      + +L  G+G  ++V A+   +V AVE+   + E  + NI  N+  N+ +
Sbjct: 27  AIETSVKKGDTVFDLGTGSGILAMVAAKDAKKVYAVELDPITTEYTKRNITTNNFENIIV 86

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           +   +  +    + +     L D  + +     +     + GL      ++   P  +Y
Sbjct: 87  IESDATYYPFKEKADLVIAELLDTGLITEPQVPVLNSIIKRGLLKEGGIII---PKEVY 142


>gi|110800155|ref|YP_694735.1| hypothetical protein CPF_0275 [Clostridium perfringens ATCC 13124]
 gi|110674802|gb|ABG83789.1| conserved hypothetical protein [Clostridium perfringens ATCC 13124]
          Length = 249

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 33/160 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           A    +  +L+L  G G    ++   ++   V+ +EI +   E A  +   N++ + V  
Sbjct: 42  ANVNRKHSVLDLCTGTGIIPFIIYGKKNPKEVVGIEIQEEFAEMANRSAKINNIEDKVSF 101

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-----------G 310
           V    K+        +E N+L        +F  + V+PP    +   V            
Sbjct: 102 VCGDLKD--------KELNKLMP------KFDVVTVNPPYKLNNAGIVNPEDKLAIARHE 147

Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
           ++     ++ +S       +D   L   H  ERLA  D F
Sbjct: 148 IMCNLEDVIAVS---RRFLKDNGRLYMVHRPERLA--DIF 182


>gi|86157207|ref|YP_463992.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773718|gb|ABC80555.1| Methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 382

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 2/118 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++    A          ++  G G  +LVLAR   RV+A ++   +V  AR N A   + 
Sbjct: 193 LVAAAAAERPLHGKRAFDVGTGTGVLALVLARAGARVIATDLEPRAVACARENAARLGLA 252

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
               V     +       +        I   ++      V  P     +  +  + A+
Sbjct: 253 GQVEVV--EADLFPEGVADVIVCNPPWIPAPAHGPLERAVYDPGGAFLERLLRGLPAH 308


>gi|16330344|ref|NP_441072.1| hypothetical protein sll1693 [Synechocystis sp. PCC 6803]
 gi|1652833|dbj|BAA17752.1| sll1693 [Synechocystis sp. PCC 6803]
          Length = 440

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 213 LLELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L++ CG G    ++ LA    +V+ ++I+  S++ A   +  + ++N +   ++ ++  
Sbjct: 62  MLDVACGTGATTLTMALANPGAKVVGIDISPESIKIAEERLQYHKIDNSEFHVLALEDLD 121

Query: 271 QAMRR 275
           Q  ++
Sbjct: 122 QLGQK 126


>gi|257885613|ref|ZP_05665266.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,501]
 gi|257821469|gb|EEV48599.1| rRNA small subunit methyltransferase C [Enterococcus faecium
           1,231,501]
          Length = 201

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 18/120 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
             +++         +G +L++ CG G   L LA    R V  V+I + +V  A+ N   N
Sbjct: 47  RVLIDAFDWEELPDEGKVLDVGCGYGPIGLALAFATQRFVEMVDINERAVSLAQGNAKRN 106

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + +V I + +  E                  +H   +  I  +PP          ++  
Sbjct: 107 QIEHVDIHQSNIYE-----------------AVHEETYAAIVSNPPIRAGKKVVHEILTG 149


>gi|257087942|ref|ZP_05582303.1| methyltransferase small [Enterococcus faecalis D6]
 gi|312901155|ref|ZP_07760442.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0470]
 gi|256995972|gb|EEU83274.1| methyltransferase small [Enterococcus faecalis D6]
 gi|311291744|gb|EFQ70300.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0470]
 gi|315026767|gb|EFT38699.1| methyltransferase small domain protein [Enterococcus faecalis
           TX2137]
          Length = 202

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPAGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA    R V  V++ + +V  A+ N   N +  V I   +  E            
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYE------------ 119

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 ++   +  I  +PP         G++  
Sbjct: 120 -----TLNETTYAAIVSNPPIRAGKKVVHGILTG 148


>gi|256761972|ref|ZP_05502552.1| methyltransferase [Enterococcus faecalis T3]
 gi|256683223|gb|EEU22918.1| methyltransferase [Enterococcus faecalis T3]
          Length = 202

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPAGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA    R V  V++ + +V  A+ N   N +  V I   +  E            
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYE------------ 119

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 ++   +  I  +PP         G++  
Sbjct: 120 -----TLNETTYAAIVSNPPIRAGKKVVHGILTG 148


>gi|227519961|ref|ZP_03950010.1| methyltransferase [Enterococcus faecalis TX0104]
 gi|229546999|ref|ZP_04435724.1| methyltransferase [Enterococcus faecalis TX1322]
 gi|255971674|ref|ZP_05422260.1| methyltransferase [Enterococcus faecalis T1]
 gi|256618411|ref|ZP_05475257.1| methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256855133|ref|ZP_05560494.1| methyltransferase small [Enterococcus faecalis T8]
 gi|256956892|ref|ZP_05561063.1| methyltransferase [Enterococcus faecalis DS5]
 gi|257078562|ref|ZP_05572923.1| methyltransferase small [Enterococcus faecalis JH1]
 gi|257084115|ref|ZP_05578476.1| methyltransferase small [Enterococcus faecalis Fly1]
 gi|257088620|ref|ZP_05582981.1| methyltransferase [Enterococcus faecalis CH188]
 gi|257418729|ref|ZP_05595723.1| methyltransferase [Enterococcus faecalis T11]
 gi|257421465|ref|ZP_05598455.1| methyltransferase [Enterococcus faecalis X98]
 gi|300862211|ref|ZP_07108291.1| methyltransferase small domain protein [Enterococcus faecalis TUSoD
           Ef11]
 gi|307269054|ref|ZP_07550416.1| methyltransferase small domain protein [Enterococcus faecalis
           TX4248]
 gi|307276363|ref|ZP_07557488.1| methyltransferase small domain protein [Enterococcus faecalis
           TX2134]
 gi|307287050|ref|ZP_07567123.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0109]
 gi|312952570|ref|ZP_07771435.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0102]
 gi|227072509|gb|EEI10472.1| methyltransferase [Enterococcus faecalis TX0104]
 gi|229307927|gb|EEN73914.1| methyltransferase [Enterococcus faecalis TX1322]
 gi|255962692|gb|EET95168.1| methyltransferase [Enterococcus faecalis T1]
 gi|256597938|gb|EEU17114.1| methyltransferase [Enterococcus faecalis ATCC 4200]
 gi|256709646|gb|EEU24693.1| methyltransferase small [Enterococcus faecalis T8]
 gi|256947388|gb|EEU64020.1| methyltransferase [Enterococcus faecalis DS5]
 gi|256986592|gb|EEU73894.1| methyltransferase small [Enterococcus faecalis JH1]
 gi|256992145|gb|EEU79447.1| methyltransferase small [Enterococcus faecalis Fly1]
 gi|256997432|gb|EEU83952.1| methyltransferase [Enterococcus faecalis CH188]
 gi|257160557|gb|EEU90517.1| methyltransferase [Enterococcus faecalis T11]
 gi|257163289|gb|EEU93249.1| methyltransferase [Enterococcus faecalis X98]
 gi|295112480|emb|CBL31117.1| 16S rRNA m(2)G 1207 methyltransferase [Enterococcus sp. 7L76]
 gi|300848736|gb|EFK76493.1| methyltransferase small domain protein [Enterococcus faecalis TUSoD
           Ef11]
 gi|306501829|gb|EFM71119.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0109]
 gi|306506968|gb|EFM76113.1| methyltransferase small domain protein [Enterococcus faecalis
           TX2134]
 gi|306514624|gb|EFM83177.1| methyltransferase small domain protein [Enterococcus faecalis
           TX4248]
 gi|310629471|gb|EFQ12754.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0102]
 gi|315028782|gb|EFT40714.1| methyltransferase small domain protein [Enterococcus faecalis
           TX4000]
 gi|315031193|gb|EFT43125.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0017]
 gi|315035972|gb|EFT47904.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0027]
 gi|315143269|gb|EFT87285.1| methyltransferase small domain protein [Enterococcus faecalis
           TX2141]
 gi|315147092|gb|EFT91108.1| methyltransferase small domain protein [Enterococcus faecalis
           TX4244]
 gi|315151191|gb|EFT95207.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0012]
 gi|315153419|gb|EFT97435.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0031]
 gi|315156294|gb|EFU00311.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0043]
 gi|315158568|gb|EFU02585.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0312]
 gi|315160863|gb|EFU04880.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0645]
 gi|315165823|gb|EFU09840.1| methyltransferase small domain protein [Enterococcus faecalis
           TX1302]
 gi|315168183|gb|EFU12200.1| methyltransferase small domain protein [Enterococcus faecalis
           TX1341]
 gi|315171354|gb|EFU15371.1| methyltransferase small domain protein [Enterococcus faecalis
           TX1342]
 gi|315172588|gb|EFU16605.1| methyltransferase small domain protein [Enterococcus faecalis
           TX1346]
 gi|315579395|gb|EFU91586.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0630]
 gi|323479387|gb|ADX78826.1| S-adenosylmethionine-dependent methyltransferase domain protein
           [Enterococcus faecalis 62]
 gi|327533971|gb|AEA92805.1| methyltransferase domain protein [Enterococcus faecalis OG1RF]
 gi|329570892|gb|EGG52602.1| methyltransferase small domain protein [Enterococcus faecalis
           TX1467]
          Length = 202

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPAGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA    R V  V++ + +V  A+ N   N +  V I   +  E            
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYE------------ 119

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 ++   +  I  +PP         G++  
Sbjct: 120 -----TLNETTYAAIVSNPPIRAGKKVVHGILTG 148


>gi|29374820|ref|NP_813972.1| hypothetical protein EF0170 [Enterococcus faecalis V583]
 gi|227555823|ref|ZP_03985870.1| methyltransferase [Enterococcus faecalis HH22]
 gi|29342278|gb|AAO80044.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|227174990|gb|EEI55962.1| methyltransferase [Enterococcus faecalis HH22]
 gi|315573622|gb|EFU85813.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0309B]
 gi|315582030|gb|EFU94221.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0309A]
          Length = 202

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPAGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA    R V  V++ + +V  A+ N   N +  V I   +  E            
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYE------------ 119

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 ++   +  I  +PP         G++  
Sbjct: 120 -----TLNETTYAAIVSNPPIRAGKKVVHGILTG 148


>gi|26247535|ref|NP_753575.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli CFT073]
 gi|91210433|ref|YP_540419.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli UTI89]
 gi|110641442|ref|YP_669172.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli 536]
 gi|117623430|ref|YP_852343.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli APEC O1]
 gi|191170952|ref|ZP_03032503.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli F11]
 gi|218558141|ref|YP_002391054.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli S88]
 gi|218689159|ref|YP_002397371.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli ED1a]
 gi|227886366|ref|ZP_04004171.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli 83972]
 gi|237705174|ref|ZP_04535655.1| methyltransferase HemK [Escherichia sp. 3_2_53FAA]
 gi|300971919|ref|ZP_07171707.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 45-1]
 gi|300995965|ref|ZP_07181327.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           200-1]
 gi|301046861|ref|ZP_07193978.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           185-1]
 gi|331657263|ref|ZP_08358225.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli TA206]
 gi|26107936|gb|AAN80135.1|AE016759_409 Protein methyltransferase hemK [Escherichia coli CFT073]
 gi|91072007|gb|ABE06888.1| protein methyltransferase HemK [Escherichia coli UTI89]
 gi|110343034|gb|ABG69271.1| protein methyltransferase HemK [Escherichia coli 536]
 gi|115512554|gb|ABJ00629.1| protein methyltransferase HemK [Escherichia coli APEC O1]
 gi|190908684|gb|EDV68272.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli F11]
 gi|218364910|emb|CAR02606.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli S88]
 gi|218426723|emb|CAR07560.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli ED1a]
 gi|226899931|gb|EEH86190.1| methyltransferase HemK [Escherichia sp. 3_2_53FAA]
 gi|227836570|gb|EEJ47036.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli 83972]
 gi|294492037|gb|ADE90793.1| protein methyltransferase HemK [Escherichia coli IHE3034]
 gi|300301229|gb|EFJ57614.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           185-1]
 gi|300304662|gb|EFJ59182.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           200-1]
 gi|300411044|gb|EFJ94582.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 45-1]
 gi|307553267|gb|ADN46042.1| protein methyltransferase HemK [Escherichia coli ABU 83972]
 gi|307627265|gb|ADN71569.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli UM146]
 gi|315288567|gb|EFU47965.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           110-3]
 gi|315290790|gb|EFU50162.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           153-1]
 gi|315297346|gb|EFU56626.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 16-3]
 gi|323949671|gb|EGB45557.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H252]
 gi|323953933|gb|EGB49732.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H263]
 gi|324015638|gb|EGB84857.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 60-1]
 gi|331055511|gb|EGI27520.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli TA206]
          Length = 277

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|292655251|ref|YP_003535148.1| protein-L-isoaspartate O-methyltransferase [Haloferax volcanii DS2]
 gi|291370660|gb|ADE02887.1| protein-L-isoaspartate O-methyltransferase [Haloferax volcanii DS2]
          Length = 208

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V  A    +  +L+L  G G  +L LA    RV+  +I++  +E AR   A   + NV+ 
Sbjct: 36  VHYADPSPEDVVLDLGTGTGAIALALAPDAKRVVGRDISEGMLEQARTKAAEVGIENVEF 95

Query: 262 VRMSSKE 268
                ++
Sbjct: 96  DEGRFRD 102


>gi|242398179|ref|YP_002993603.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Thermococcus sibiricus MM 739]
 gi|242264572|gb|ACS89254.1| Cyclopropane-fatty-acyl-phospholipid synthase superfamily
           [Thermococcus sibiricus MM 739]
          Length = 245

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 199 LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++++L   K  +G  +L++ CG G  SL LA+   RV  V+I++  +E A        V 
Sbjct: 30  IDFLLEEFKLPEGAKILDVGCGVGRHSLELAKRGYRVTGVDISQKMLEKAEERAQKEGVE 89

Query: 258 NVKIVRMSSKEFT 270
            V+ ++  + +F 
Sbjct: 90  -VEFIKADATKFA 101


>gi|255080032|ref|XP_002503596.1| predicted protein [Micromonas sp. RCC299]
 gi|226518863|gb|ACO64854.1| predicted protein [Micromonas sp. RCC299]
          Length = 315

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAA 253
            ML W  +        +L++ CG G  S  LA+ F    +V  + ++   VE A      
Sbjct: 85  EMLAW--SECPDKPAKVLDVGCGIGGTSRHLAKTFGSGTQVTGITLSPKQVERATELAKE 142

Query: 254 NHVNNVKIVRMSSKE 268
            ++ N     M++ E
Sbjct: 143 QNLPNASFRVMNALE 157


>gi|170289748|ref|YP_001736564.1| putative RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173828|gb|ACB06881.1| putative RNA methylase [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 193

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 25/135 (18%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
           A +   ++             + +L CGNG  ++  L       + +++   ++E A+ N
Sbjct: 21  ANLAAALIHMCYMMGDLEGKSVADLGCGNGILAIGALLYGASSAIGIDLDPEAIEIAKRN 80

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
                 +   + + M  ++F++                      T+  +PP    R   D
Sbjct: 81  ADRLGLLGRARFLVMDVRDFSE-------------------EVDTVIQNPPFGSRRRHAD 121

Query: 306 DATVGMVQAYPHILY 320
              + +      ++Y
Sbjct: 122 TLFLDVALRRAKVVY 136


>gi|72175451|ref|XP_798637.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115949725|ref|XP_001184379.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 364

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 2/112 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +         +L+L CG G  SLV A ++    V+ ++ ++ ++   +       + NV+
Sbjct: 171 IEERMKSGIRILDLGCGRGLASLVFAENYPNSTVVGLDFSEEAINYGKERAKEKGLTNVE 230

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            V   +           ++    D+         + +   R    D    M+
Sbjct: 231 FVCEDAACIPDDWNNTIDYIYTFDVIHDLAHADNVLLALNRILKPDGVFSMI 282


>gi|302508000|ref|XP_003015961.1| ubiE/COQ5 methyltransferase, putative [Arthroderma benhamiae CBS
           112371]
 gi|291179529|gb|EFE35316.1| ubiE/COQ5 methyltransferase, putative [Arthroderma benhamiae CBS
           112371]
          Length = 267

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A   G     L+L CG+G  +  LA  F +V  ++ +   +E A  N+      NV+ 
Sbjct: 2   IFAYHHGGYDTCLDLGCGHGVVARFLAPKFKKVYGIDPSAGMIEQA-KNLTKEQ--NVEF 58

Query: 262 VRMSSKEF 269
           V+ +++  
Sbjct: 59  VQAAAESL 66


>gi|291286837|ref|YP_003503653.1| Methyltransferase type 11 [Denitrovibrio acetiphilus DSM 12809]
 gi|290883997|gb|ADD67697.1| Methyltransferase type 11 [Denitrovibrio acetiphilus DSM 12809]
          Length = 251

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 1/108 (0%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
              ML           G  +L++ CG G +++ LA+    VL  +I++  ++    +   
Sbjct: 30  EARMLNIAKKHGVDFTGQKILDVGCGTGMYTIRLAQEAASVLGTDISEEMLDILNTDAKR 89

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            ++ N++ V    K+F    R +  F  +      +Y  + +F    R
Sbjct: 90  ENITNLRTVLTDWKDFETDERFDLIFCSMTPAVHDNYTREKLFKYTDR 137


>gi|320592224|gb|EFX04663.1| mitochondrial n-glutamine methyltransferase mtq1 [Grosmannia
           clavigera kw1407]
          Length = 341

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 10/128 (7%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-----RVLAVEIAKPSVEAARYNIA 252
           + +W++    G    +L++  G G  +L+L          RV+ ++++  +V  AR N  
Sbjct: 105 LADWLMRPEIGPVSTILDVCTGTGCIALLLYERLRQQQHLRVVGIDVSPAAVALARANRR 164

Query: 253 ANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDAT 308
                ++      SS  F +A     ++  L   +    R   +  +PP   R G    T
Sbjct: 165 RLGFPSDRDGTDSSSVSFHRADVFADDWLHLAS-NAADGRIDVLVCNPPYVSRDGFAHET 223

Query: 309 VGMVQAYP 316
              V+ + 
Sbjct: 224 ARSVRLFE 231


>gi|310286651|ref|YP_003937909.1| N6-adenine-specific methylase [Bifidobacterium bifidum S17]
 gi|309250587|gb|ADO52335.1| N6-adenine-specific methylase [Bifidobacterium bifidum S17]
          Length = 442

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +         +     G  G +++L  G G     +AR F R + VE      E A +N 
Sbjct: 82  SQFAAQYKAGIARRVAGAGGAMVDLTGGFGVDCSYIARGFSRAVYVERQPHLCELAAHNF 141

Query: 252 AANHVNNVKIVRMSSKEFTQ--AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            A  + ++ ++   ++++ +     R    +        +     I++DP R        
Sbjct: 142 RALGLPHMDVINGDAEDWLRGVVDARAASADSAAVDSATAVPIALIYLDPARRDAHGGRT 201

Query: 310 GMVQAYPHILYISCNPDSLC-RDLSILSTTHTIERLALF 347
             +          C PD L  +D  +  + H + +L+  
Sbjct: 202 YAIAD--------CTPDVLALKDRLLAVSPHVMVKLSPM 232


>gi|308273620|emb|CBX30222.1| hypothetical protein N47_D30310 [uncultured Desulfobacterium sp.]
          Length = 210

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 32/77 (41%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +  +   + +      +++++ CG G+    LA+    V  VE++      A+    AN
Sbjct: 21  ALKEIRNTIVSQIDAGSNVMDIGCGTGSLVFDLAKKCSLVTGVELSSKMFGHAKRRQLAN 80

Query: 255 HVNNVKIVRMSSKEFTQ 271
            + NV+ V   +   + 
Sbjct: 81  KIQNVRFVHGDASNLSD 97


>gi|289433610|ref|YP_003463482.1| hypothetical protein lse_0241 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169854|emb|CBH26392.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 201

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           + + G +L++ CG G   L +A+ F   +V  V++   ++E A  N   N + NV+I   
Sbjct: 57  QEVSGKILDVGCGYGPMGLTVAKEFPESQVDMVDVNLRALELAGENAKLNQITNVRIYES 116

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           S  E                 ++    ++ I  +PP          +++ 
Sbjct: 117 SVYE-----------------NVADEDYQAIISNPPIRAGKQVVHAILEG 149


>gi|302879885|ref|YP_003848449.1| PUA domain containing protein [Gallionella capsiferriformans ES-2]
 gi|302582674|gb|ADL56685.1| PUA domain containing protein [Gallionella capsiferriformans ES-2]
          Length = 445

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 26/158 (16%)

Query: 164 RDYVDERLTVAGRTLIYRQI-----ENSFT--QPNAGINVHMLEWVLAATKGIQGDLLEL 216
           R  + + + V    L +R       +  F   Q     N  + E +         D+L  
Sbjct: 224 RGTLPDTVEVIEHGLRFRVDVADGQKTGFYLDQ---RDNRKLTETLAEGR-----DVLNC 275

Query: 217 YCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           +C  G FSL  L      VL+++ +  ++  A  N+  N+++          E     + 
Sbjct: 276 FCYTGGFSLYALRGGAKSVLSMDASGEALHIATDNLTRNNLD----------ESRAEWQE 325

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
              F  L+ +      F  I +DPP+     A      
Sbjct: 326 ADVFVALRKLRDQGKTFDMIILDPPKFAPTAAFAEKAA 363


>gi|242398949|ref|YP_002994373.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus
           sibiricus MM 739]
 gi|242265342|gb|ACS90024.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus
           sibiricus MM 739]
          Length = 249

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L CG G  +L LA+    V+ +++ +  +E A+       +  ++ ++  + E 
Sbjct: 43  KKILDLACGTGIPTLELAKRGYEVVGMDLHEEMLEVAKRKAKREGLT-IEFIQGDALEV 100


>gi|219850518|ref|YP_002464951.1| methyltransferase small [Chloroflexus aggregans DSM 9485]
 gi|219544777|gb|ACL26515.1| methyltransferase small [Chloroflexus aggregans DSM 9485]
          Length = 202

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 8/103 (7%)

Query: 165 DYVDERLTVAGRTLIYRQIEN----SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
            Y  +R+T   R   +         S  Q        +L  ++         +L+L CG 
Sbjct: 10  PYYKKRITYTLRGQQFAFDVGHTIFSSFQI--DEGTDLLLRLIEPAMTTPQHILDLGCGC 67

Query: 221 GNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           G   + LAR F    V  V+    +V  AR+N   N   NV +
Sbjct: 68  GVIGICLARRFPNAHVTLVDKDLLAVRYARHNAILNATPNVTV 110


>gi|162448507|ref|YP_001610874.1| precorrin-6Y C(5,15)-methyltransferase (decarboxylating) [Sorangium
           cellulosum 'So ce 56']
 gi|161159089|emb|CAN90394.1| Precorrin-6Y C(5,15)-methyltransferase (decarboxylating) [Sorangium
           cellulosum 'So ce 56']
          Length = 442

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + + T      + ++  G+G+ S+  A      RV A+E+    VE  R N+ A+ V+NV
Sbjct: 249 IASMTIRPDAVVWDVGAGSGSVSIEAAMLCPLGRVYAIEVDPEGVEICRDNVRAHGVDNV 308

Query: 260 KIVRMSSKEFTQAM 273
           ++V   + E   A+
Sbjct: 309 RVVAGRAPEALAAL 322


>gi|303232957|ref|ZP_07319638.1| Ribosomal RNA large subunit methyltransferase L family protein
           [Atopobium vaginae PB189-T1-4]
 gi|302480955|gb|EFL44034.1| Ribosomal RNA large subunit methyltransferase L family protein
           [Atopobium vaginae PB189-T1-4]
          Length = 896

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 16/168 (9%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN--V 259
           +A         L L+   G  +   A    +    V+++ PS+  A+ N+A N       
Sbjct: 719 MAKQTHGSKRFLNLFAYTGTSTCYAADGGAKFTTTVDMSAPSLAWAQRNMARNGFTGSEH 778

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSY------RFKTIFVDPPRSGLDDATVGMVQ 313
           + V+    E+ Q MR       L   D+ ++      +  +  V    + L      ++ 
Sbjct: 779 EFVQADVLEWVQDMRHSANRWDLILCDVPTFSNSSRMKRSSWDVQRDHAELIITLSRLLT 838

Query: 314 AYPHILYISCNPDSLCRDLSILSTTHT-IERL----ALFDQFPYTRHM 356
                ++ SCN  +   D   L+     +E L      FD F  ++H+
Sbjct: 839 KNGKAIF-SCNLRTFTLDADTLAKARVHVEPLGSASVPFD-FARSKHV 884


>gi|119776097|ref|YP_928837.1| putative SAM-dependent methyltransferase [Shewanella amazonensis
           SB2B]
 gi|224493222|sp|A1S9W1|RLMI_SHEAM RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|119768597|gb|ABM01168.1| SAM-dependent methyltransferase [Shewanella amazonensis SB2B]
          Length = 396

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +A        +L  +C  G F L  A+     +  V+++  +++ AR+N+A N + N 
Sbjct: 212 RAMAGRFVEGKSVLNCFCYTGTFGLYAAKAGAASIENVDVSTLALDTARHNMAINGL-ND 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
             V  S  +  + +R+ R+             F  I +DPP+   + A + G  + Y  I
Sbjct: 271 DHVTYSEADVFKLLRQYRD---------EGKTFDVIVLDPPKFADNKAQLNGACRGYKDI 321


>gi|323977217|gb|EGB72304.1| protein-(glutamine-N5) methyltransferase [Escherichia coli TW10509]
          Length = 277

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|300858340|ref|YP_003783323.1| hypothetical protein cpfrc_00922 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685794|gb|ADK28716.1| hypothetical protein cpfrc_00922 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206058|gb|ADL10400.1| N6-adenine-specific methylasee [Corynebacterium pseudotuberculosis
           C231]
 gi|302330609|gb|ADL20803.1| Putative DNA methylase [Corynebacterium pseudotuberculosis 1002]
 gi|308276294|gb|ADO26193.1| Putative DNA methylase [Corynebacterium pseudotuberculosis I19]
          Length = 192

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 13/144 (9%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L+ G+G   L   +R  D V+ VE    +V+  R+N+      NV +  M +  + 
Sbjct: 46  RVLDLFAGSGALGLEAASRGADEVVLVENNPKAVQIIRHNMQVVGHPNVTVAEMKASTYV 105

Query: 271 QAMRREREFNRLKDIDIHSYRFKT----IFVDPPRSGLDDATVGMVQAYPHILYISCN-P 325
            +  +E     L D              I + P         V   +  P   + SC  P
Sbjct: 106 ASAPKEYFDMVLADPPYDLPDSDIAEMLIALIPTLVDGAAVVVERHRESPETAWPSCFVP 165

Query: 326 DSLCRDLSILSTTHTIERLALFDQ 349
            +      +   T  I R    D 
Sbjct: 166 TTQ----KLKKRTFGIAR---MDM 182


>gi|332671312|ref|YP_004454320.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Cellulomonas fimi ATCC 484]
 gi|332340350|gb|AEE46933.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Cellulomonas fimi ATCC 484]
          Length = 306

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN 257
           E       G    +++L CG G   L +A      RV AV+ +  +V   R N A    +
Sbjct: 108 EAARLVAAGTSPVVVDLCCGAGGLGLAVATEVPGSRVAAVDASPAAVALTRRNAADAGAD 167

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            V+++    ++             L D+   + R   +  +PP
Sbjct: 168 -VRVLPGDVRDT----------GLLADL---AGRVDVVVSNPP 196


>gi|330957099|gb|EGH57359.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 398

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 82/284 (28%), Gaps = 49/284 (17%)

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHR 125
            I   +  SLL++ + + +     +  +P  R      D L      +    +V  +   
Sbjct: 73  DIKLPLDKSLLVHRINVALSLRERLFDKPFYRLVFGDSDLLPGLVVDRFGDILVVQLASA 132

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDYVDERLTVAGRTL 178
            +++   +    L   +       +    A          +       V E + +    +
Sbjct: 133 TMENHKEDIVAALVQVIKPSGILFKNDSAARDAEGLNRYVETVFG--LVPEWVALEENGV 190

Query: 179 IYR--QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVL 235
            +    +     Q       H +     A       +L+LY   G + +   A     V 
Sbjct: 191 KFEAPVMAG---QKTGWFYDHRMNRARLAPYVKGKRVLDLYSYIGGWGIQAAAFGAADVT 247

Query: 236 AVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            V+ +  +++    N A N     +  +                F  LK++     RF  
Sbjct: 248 CVDASSFALDGVERNAALNGFAEKMTCIEGDV------------FEALKELKAGEERFDV 295

Query: 295 IFVDPPRSG---------------LDDATVGMVQAYPHILYISC 323
           I  DPP                  L++  + ++     ++  SC
Sbjct: 296 IVADPPAFIKRKKDMKNGEGAYRRLNEQAMRLLSKDGILVSASC 339


>gi|329945389|ref|ZP_08293152.1| protein-(glutamine-N5) methyltransferase [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328529011|gb|EGF55942.1| protein-(glutamine-N5) methyltransferase [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 298

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 194 INVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
           +    +E       G  G +L  +L  G+G  +  +A+     RV+AVEI++ +   AR 
Sbjct: 111 VAGAAIEAAREVMAGGGGVVLTADLCTGSGAIAACVAKEVPGARVVAVEISETAAALARE 170

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N        V+++   + +             L   D++  +   +  +PP
Sbjct: 171 NCERLVPGRVEVIHADATD------------PLVLHDLNG-QVDVVVSNPP 208


>gi|313224250|emb|CBY20039.1| unnamed protein product [Oikopleura dioica]
          Length = 427

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 186 SFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           S+       I  H+ E            +++ +CG G  ++  A   +RV+A++I    +
Sbjct: 205 SWFSVTPEKIAEHIAERCRCEL------IVDGFCGVGGNAIQFAFTCERVIAIDIDPEKI 258

Query: 245 EAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           E A++N A   V + ++ +     +   ++R +  F         +Y  + IF      G
Sbjct: 259 EMAKHNAAIYGVEDRIEFIVGDYFKIIPSLRPDVVF-LSPPWGGPAYLDQDIFDLKDMGG 317

Query: 304 LDDATVGMVQAYP--HILY 320
           +D   +  V      +I Y
Sbjct: 318 MDGLEIYRVAKERTDNIAY 336


>gi|256833417|ref|YP_003162144.1| methyltransferase small [Jonesia denitrificans DSM 20603]
 gi|256686948|gb|ACV09841.1| methyltransferase small [Jonesia denitrificans DSM 20603]
          Length = 536

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 39/130 (30%)

Query: 186 SFT--QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           SFT  Q     NV              G +L++  G G  +L   RH  +V+A +I+  +
Sbjct: 173 SFTLAQVTPRTNV--------------GRVLDIGTGCGVQALAATRHARQVMATDISPRA 218

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP---- 299
           V  AR+N A N               +    RE  F       +H   F  +  +P    
Sbjct: 219 VAFARFNAALND--------------SDVEIREGSFFE----PVHGETFDLVVSNPPFVI 260

Query: 300 -PRSGLDDAT 308
            PR+G D A 
Sbjct: 261 TPRTGTDLAL 270


>gi|229165089|ref|ZP_04292884.1| hypothetical protein bcere0007_860 [Bacillus cereus AH621]
 gi|228618352|gb|EEK75382.1| hypothetical protein bcere0007_860 [Bacillus cereus AH621]
          Length = 213

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               ++G++L++ CG G   L LA+ F    +  V++ + ++  A+ N   N + N++I+
Sbjct: 68  QMPDVKGNVLDVGCGYGPIGLSLAKEFQNREIHMVDVNERALGLAKENAVNNRIENIRIL 127

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           + S  E                      ++  I  +PP R+G D     + +A  +++
Sbjct: 128 QSSVYENVDG------------------KYAVILSNPPIRAGKDIVHEILEKAVEYLV 167


>gi|148236727|ref|NP_001085693.1| trimethylguanosine synthase 1 [Xenopus laevis]
 gi|49119211|gb|AAH73206.1| MGC80481 protein [Xenopus laevis]
          Length = 837

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 181 RQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           +  E  +       I  H+   V  +     G +++ +CG G  ++  A+  +RV+AV+I
Sbjct: 652 KLDEEGWFSVTPEKIAEHIASRVRQSCD--CGLVVDAFCGVGGNAIQFAKAGNRVIAVDI 709

Query: 240 AKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREF 279
               ++ AR N     V + ++ +         A++ +  F
Sbjct: 710 DPAKLDFARNNAEVYGVTDQIEFILGDFMVLAPALKADAIF 750


>gi|313639730|gb|EFS04489.1| methyltransferase [Listeria seeligeri FSL S4-171]
          Length = 201

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 19/110 (17%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           + + G +L++ CG G   L +A+ F   +V  V++   ++E A  N   N + NV+I   
Sbjct: 57  QEVSGKILDVGCGYGPMGLTVAKEFPESQVDMVDVNLRALELAGENAKLNQITNVRIYES 116

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           S  E                 ++    ++ I  +PP          +++ 
Sbjct: 117 SVYE-----------------NVADEDYQAIISNPPIRAGKQVVHAILEG 149


>gi|307212279|gb|EFN88087.1| tRNA (guanine-N(1)-)-methyltransferase [Harpegnathos saltator]
          Length = 473

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKI 261
           L A       L +++ G G F++  AR   +VLA ++   S +  + N+ AN + NN K 
Sbjct: 247 LIACMKKDDVLYDVFAGVGPFAVPAARKGVKVLANDLNPESYKWLQINVTANKIKNNFKA 306

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
             M  ++F + + +    +R    D   +  + I ++ P S ++
Sbjct: 307 FNMDGRDFLRNIVKNDILSRR---DRELHGSEHIIMNLPSSAVE 347


>gi|194036729|ref|XP_001927911.1| PREDICTED: trimethylguanosine synthase [Sus scrofa]
          Length = 851

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    ++ AR N     V + ++ ++    +   
Sbjct: 692 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFIQGDFLQLAP 751

Query: 272 AMRREREF--NRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            ++ +  F        D   +  F    +  P          M+    +I+Y
Sbjct: 752 RLKADVVFLSPPWGGPDYATAETFDIRTMMAPDGFEIFRLSQMITN--NIVY 801


>gi|150402772|ref|YP_001330066.1| putative RNA methylase [Methanococcus maripaludis C7]
 gi|150033802|gb|ABR65915.1| putative RNA methylase [Methanococcus maripaludis C7]
          Length = 260

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +  +      + +L  G+G  +++ A++   V AVE+   + +  + NI  N   N+ +
Sbjct: 27  AVEESVKSGNIVFDLGTGSGILAMIAAKNAKHVYAVELDPITTDYTKENIKENDFKNITV 86

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           +   +  +  + + +     L D  + +     +     + GL      ++   P  +Y 
Sbjct: 87  IEDDAAYYPFSEKADIVIAELLDTGLITEPQVPVLNSIIKKGLLKEGGIII---PEEVYN 143

Query: 322 S 322
           S
Sbjct: 144 S 144


>gi|88798100|ref|ZP_01113687.1| 16S RNA G1207 methylase RsmC [Reinekea sp. MED297]
 gi|88779297|gb|EAR10485.1| 16S RNA G1207 methylase RsmC [Reinekea sp. MED297]
          Length = 319

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 30/201 (14%)

Query: 163 DRDYVDERLTVAG-RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           D+   +E+ T    + L    +   F+   AG      E +L+      G+LLE   G+G
Sbjct: 131 DQPSAEEQWTTFSWQDLTGYALPGVFS---AGRLDKGTEVLLSTLPEFHGELLEFGAGSG 187

Query: 222 NFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
             +  LA+     RV AVEI   +V +A   +  N + N   +  S  +  +++  +R  
Sbjct: 188 ILTSALAKQPSVRRVDAVEIDLLAVRSANRTVQENQLTNKAFIHWS--DGLESLPAQRYD 245

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI--------------SCNP 325
             + +   H               L       ++     +++                 P
Sbjct: 246 ALVSNPPFHQGLRTAYAAT---EKLFAQAHLWLKPGGQFIWVINDFLNYQMHLDSAFSAP 302

Query: 326 DSLCRDLSILSTTHTIERLAL 346
           ++L R          ++++ L
Sbjct: 303 ETLVR-----ERGFKVQKVTL 318


>gi|320529957|ref|ZP_08031033.1| ribosomal protein L11 methyltransferase [Selenomonas artemidis
           F0399]
 gi|320137754|gb|EFW29660.1| ribosomal protein L11 methyltransferase [Selenomonas artemidis
           F0399]
          Length = 317

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 17/179 (9%)

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARKYQ 148
           +    +L+  LR    ++  L   +       I H  + D+ W E     ++ +H  K  
Sbjct: 67  LPDDAQLQERLRTLAQRVAALQESAVHVGAGTISHTFMADEDWAETW---KEYVHTEKIG 123

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
            +++ R              E  T     ++      +     A     M    L     
Sbjct: 124 QRIVVRPT-----------WEEYTAKDDEIVIDLDPGAAFGTGAHATTAMCLRALEHLVV 172

Query: 209 IQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               + ++ CG+G  ++  A+     VLA++    +V  A  NI  N V    +V M S
Sbjct: 173 PGTRVYDVGCGSGILAIAAAKLGAGEVLAMDCDPVAVRVAEQNIVQNDVRG-HVVAMES 230


>gi|302872095|ref|YP_003840731.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574954|gb|ADL42745.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 288

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 21/133 (15%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIA 252
              ++E  +   K  +    L++  G+G  ++ L +  D +VLAV+I++ ++E AR N  
Sbjct: 105 TEVLVEVAIEIFKDRKNLYFLDIGTGSGCIAVALCKFLDCKVLAVDISERALEVARKNAK 164

Query: 253 ANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATV 309
            N V N +  VR +  E                    + RF  I  +PP     +     
Sbjct: 165 LNGVENRISFVRSNLFEDIP----------------KNLRFDAILSNPPYISESERFKLE 208

Query: 310 GMVQAYPHILYIS 322
             V   PHI   S
Sbjct: 209 KQVLKEPHIALFS 221


>gi|154296147|ref|XP_001548506.1| hypothetical protein BC1G_12803 [Botryotinia fuckeliana B05.10]
 gi|150843764|gb|EDN18957.1| hypothetical protein BC1G_12803 [Botryotinia fuckeliana B05.10]
          Length = 281

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 13/92 (14%)

Query: 180 YRQI-ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           +R     SF               +    G +  LL+L CG+G  S  LA HF++V   +
Sbjct: 17  FRPSYPQSFY-----------TKTINYHIGPRSTLLDLGCGHGVVSRALAPHFEKVYGTD 65

Query: 239 IAKPSVEAARYNIAANH-VNNVKIVRMSSKEF 269
            +   +  AR   A +    NV+  + S+++ 
Sbjct: 66  PSAVMINQARKIAAESDTAGNVQWRQASAEDL 97


>gi|83648628|ref|YP_437063.1| SAM-dependent methyltransferase [Hahella chejuensis KCTC 2396]
 gi|83636671|gb|ABC32638.1| predicted SAM-dependent methyltransferase [Hahella chejuensis KCTC
           2396]
          Length = 397

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 16/93 (17%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSK 267
             +L+L+   G + +  LA   + V  V+ ++ ++E A+ N     ++N   + +R  + 
Sbjct: 221 KRVLDLFSYVGGWGVQALANGAESVTFVDSSESALEWAQRNCRQ-QMDNPPCRFIREDA- 278

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                      FN L+++     +F  + VDPP
Sbjct: 279 -----------FNALENLCQEKEKFDVVIVDPP 300


>gi|320538899|ref|ZP_08038575.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Serratia symbiotica str. Tucson]
 gi|320031059|gb|EFW13062.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Serratia symbiotica str. Tucson]
          Length = 282

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++   L         +L+L  G G  +L LA  R    V+ V++   ++  A++N     
Sbjct: 98  LVALALERLPIASCHILDLGTGTGAIALALASERPDCTVIGVDVQPDALALAQHNARKLT 157

Query: 256 VNNVKIVRMS 265
           ++NV+ ++ +
Sbjct: 158 ISNVQFLQGN 167


>gi|306842562|ref|ZP_07475213.1| SAM dependent methyltransferase [Brucella sp. BO2]
 gi|306287418|gb|EFM58898.1| SAM dependent methyltransferase [Brucella sp. BO2]
          Length = 381

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 27/186 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 159 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRERE 278
           G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R   
Sbjct: 217 GVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREERRGS 276

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILS 336
           F            +  I +DPP  G         + +  P ++  +C      + L+++ 
Sbjct: 277 F------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAVIL 323

Query: 337 TTHTIE 342
           T ++I 
Sbjct: 324 TAYSIR 329


>gi|284992821|ref|YP_003411375.1| hypothetical protein Gobs_4454 [Geodermatophilus obscurus DSM
           43160]
 gi|284066066|gb|ADB77004.1| conserved hypothetical protein [Geodermatophilus obscurus DSM
           43160]
          Length = 407

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNV 259
                  G     ++L C +G  ++ LAR    VLAV+    + E    N  A    + V
Sbjct: 97  RAQRLLSGEVDSAVDLGCASGTDTVALARAGATVLAVDTDPLARELTAANAEALGVADRV 156

Query: 260 KIVRMSSKEFTQAMRR 275
            +V   + E   A R 
Sbjct: 157 WVVAGDAVELVDAARG 172


>gi|225024851|ref|ZP_03714043.1| hypothetical protein EIKCOROL_01739 [Eikenella corrodens ATCC
           23834]
 gi|224942380|gb|EEG23589.1| hypothetical protein EIKCOROL_01739 [Eikenella corrodens ATCC
           23834]
          Length = 240

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L ++   + G+ G ++L++ CG G  S  +AR   +   +++A+ S++ A+ +
Sbjct: 34  HEINPLRLGFIREHSGGLTGKNVLDVGCGGGILSEAIAREAAQATGIDMAEKSLQVAQAH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
                + N+    +S +          +     ++  H     ++  
Sbjct: 94  AEQQGLANLHYRCISVEALAAEQPAAYDVVTCMEMLEHVPDPASVIA 140


>gi|224282203|ref|ZP_03645525.1| N6-adenine-specific methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 442

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +         +     G  G +++L  G G     +AR F R + VE      E A +N 
Sbjct: 82  SQFAAQYKAGIARRVAGAGGAMVDLTGGFGVDCSYIARGFSRAVYVERQPHLCELAAHNF 141

Query: 252 AANHVNNVKIVRMSSKEFTQ--AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            A  + ++ ++   ++++ +     R    +        +     I++DP R        
Sbjct: 142 RALGLPHMDVINGDAEDWLRGVVDSRAASADSAAVDSATAVPIALIYLDPARRDAHGGRT 201

Query: 310 GMVQAYPHILYISCNPDSLC-RDLSILSTTHTIERLALF 347
             +          C PD L  +D  +  + H + +L+  
Sbjct: 202 YAIAD--------CTPDVLALKDRLLAVSPHVMVKLSPM 232


>gi|218886807|ref|YP_002436128.1| hypothetical protein DvMF_1714 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757761|gb|ACL08660.1| protein of unknown function Met10 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 404

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNF-SLVLARHFDRVLAVEIAKPSVEAARYNIAAN----- 254
              AA      D+L+++C  G+F +         V  V+ + P+VE A  N+ AN     
Sbjct: 210 RAFAARFAKGQDVLDVFCYVGSFGATAARAGAASVTLVDASLPAVELAVENVKANGRAYG 269

Query: 255 -----HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDD 306
                 V++   +   + E    +RRE     L  +D  ++   R             ++
Sbjct: 270 INGVGGVDDADGIEGDAFEAMAELRREGRKFGLVCLDPPAFIKRRKDAKQGLTAYQRANE 329

Query: 307 ATVGMVQAYPHILYISC 323
             + +V      +  SC
Sbjct: 330 LALDLVADGGVFVTCSC 346


>gi|182435706|ref|YP_001823425.1| putative RNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178464222|dbj|BAG18742.1| putative RNA methylase [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 194

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 14/113 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           W           + +LY G+G   L  L+R     L VE    +V   R N+    +   
Sbjct: 37  WEALLGTLDGARVADLYAGSGAVGLEALSRGAVHALLVEADPKAVRTVRDNVRTLGLPGA 96

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           ++    +++                    +  +  +F+DPP +  DD    ++
Sbjct: 97  EVRTGKAEQIVTG-------------PAPADPYDILFLDPPYAVTDDDLREIL 136


>gi|168215155|ref|ZP_02640780.1| conserved hypothetical protein [Clostridium perfringens CPE str.
           F4969]
 gi|170713428|gb|EDT25610.1| conserved hypothetical protein [Clostridium perfringens CPE str.
           F4969]
          Length = 256

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 33/160 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           A    +  +L+L  G G    ++   ++   V+ +EI +   E A  +   N++ + V  
Sbjct: 49  ANVNRKHSVLDLCTGTGIIPFIIYGKKNPKEVVGIEIQEEFAEMANRSAKINNIEDKVSF 108

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPH 317
           V    K+              K+++    +F  + V+PP    +   V     +  A   
Sbjct: 109 VCGDLKD--------------KELNKSMPKFDVVTVNPPYKLNNAGIVNPEDKLAIARHE 154

Query: 318 ILYISCN-----PDS--LCRDLSILSTTHTIERLALFDQF 350
           I+   CN       S    +D   L   H  ERLA  D F
Sbjct: 155 IM---CNLEDVIAASRRFLKDNGRLYMVHRPERLA--DIF 189


>gi|115375393|ref|ZP_01462655.1| methyltransferase, UbiE/COQ5 family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367595|gb|EAU66568.1| methyltransferase, UbiE/COQ5 family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 278

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
            L      +  +L+  CG G   L LA+      V+A ++++  VE A        + N+
Sbjct: 107 ALMHPLSPRARVLDPSCGPGGAVLRLAQRVPQGEVVAADLSRGMVETACEAARRARLTNL 166

Query: 260 KIVRMSSKEFTQAM 273
              +    +  +A 
Sbjct: 167 AFFQADVGKPPEAF 180


>gi|87240722|gb|ABD32580.1| SAM (and some other nucleotide) binding motif; WW/Rsp5/WWP
           [Medicago truncatula]
          Length = 681

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           E  +      I  H       A++   G L++ + G G  ++  A+    V+A++I    
Sbjct: 494 EEGWFSVTPEIIAH-----HQASRCAGGTLIDCFTGAGGNAIQFAQRCRHVVAIDIDPLK 548

Query: 244 VEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF 279
           ++ AR+N A   V++ +  +          ++ +  F
Sbjct: 549 IDYARHNAAIYRVDDQIDFIAGDFFVLAPKLKADTVF 585


>gi|85711947|ref|ZP_01043001.1| HemK [Idiomarina baltica OS145]
 gi|85694133|gb|EAQ32077.1| HemK [Idiomarina baltica OS145]
          Length = 282

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 30/183 (16%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W E  +        + +  +         I  +R++    L V   TLI R         
Sbjct: 47  WPERRLTDAQFQQLQNWVARRCRGEPVAYIVGEREFWSLSLAVDKSTLIPRPD------- 99

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
                  ++E  L+ +      +L+L  G G  +L L   R   +V AV+ +  +V  A+
Sbjct: 100 ----TECLVETALSLSLPADARVLDLGTGTGAIALALKSERPDWQVTAVDWSASAVSLAQ 155

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N     +                   E   +   D       +  I  +PP    DDA 
Sbjct: 156 RNARRLGL-----------------AVEVLHSHWFDSLADRSVYDLIVSNPPYIAEDDAH 198

Query: 309 VGM 311
           +  
Sbjct: 199 LAQ 201


>gi|330944165|gb|EGH46282.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 344

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 272 MTCIEGDV------------FEALKELKAAEERFDVIVADPPAFIKRKKDMKNGEGAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNEQAMRLLSKDGILVSASC 339


>gi|310825173|ref|YP_003957531.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309398245|gb|ADO75704.1| Methyltransferase [Stigmatella aurantiaca DW4/3-1]
          Length = 275

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
            L      +  +L+  CG G   L LA+      V+A ++++  VE A        + N+
Sbjct: 104 ALMHPLSPRARVLDPSCGPGGAVLRLAQRVPQGEVVAADLSRGMVETACEAARRARLTNL 163

Query: 260 KIVRMSSKEFTQAM 273
              +    +  +A 
Sbjct: 164 AFFQADVGKPPEAF 177


>gi|254492802|ref|ZP_05105973.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           1291]
 gi|268595932|ref|ZP_06130099.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268600390|ref|ZP_06134557.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           PID18]
 gi|268602623|ref|ZP_06136790.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           PID1]
 gi|268681173|ref|ZP_06148035.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           PID332]
 gi|268685649|ref|ZP_06152511.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291044807|ref|ZP_06570516.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|293397895|ref|ZP_06642101.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria gonorrhoeae
           F62]
 gi|226511842|gb|EEH61187.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           1291]
 gi|268549720|gb|EEZ44739.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|268584521|gb|EEZ49197.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           PID18]
 gi|268586754|gb|EEZ51430.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           PID1]
 gi|268621457|gb|EEZ53857.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           PID332]
 gi|268625933|gb|EEZ58333.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291011701|gb|EFE03697.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           DGI2]
 gi|291611841|gb|EFF40910.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria gonorrhoeae
           F62]
 gi|317165468|gb|ADV09009.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 242

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 38  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++   A     +     ++  H      I 
Sbjct: 98  AALNNVADIEYECVRVEDLAGAEPHSFDVVTCMEMMEHVPDPAAIV 143


>gi|225022636|ref|ZP_03711828.1| hypothetical protein CORMATOL_02679 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944544|gb|EEG25753.1| hypothetical protein CORMATOL_02679 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 195

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 15/108 (13%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L+ G+G   L   +R    V+ VE    +    R N  A    NV++++M++  +  
Sbjct: 49  VLDLFAGSGALGLEAASRGAAEVVLVESDPHTCAVIRRNAEAVGHPNVQVMQMAASAYVA 108

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
              R+               F  +  DPP     +  V M++A   +L
Sbjct: 109 QAPRKY--------------FDMVLADPPYDLAPETVVEMLEALRPLL 142


>gi|170039575|ref|XP_001847606.1| prip interacting protein, pimt [Culex quinquefasciatus]
 gi|167863124|gb|EDS26507.1| prip interacting protein, pimt [Culex quinquefasciatus]
          Length = 1016

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ +CG G  S+ LA   ++V+A++I    +E A++N A     + ++ +         
Sbjct: 861 VVDGFCGCGGNSIQLAFTCNQVIAIDIDPKKIEMAKHNAAVYGVADRIEFIVGDFLALAD 920

Query: 272 AMRREREF 279
            ++ +  F
Sbjct: 921 RLQADAVF 928


>gi|158335894|ref|YP_001517068.1| methyltransferase [Acaryochloris marina MBIC11017]
 gi|158306135|gb|ABW27752.1| methyltransferase, putative [Acaryochloris marina MBIC11017]
          Length = 284

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 16/104 (15%)

Query: 179 IYRQIENSFT----------QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
            ++Q    F           Q +  I   +LE+      G    +L++  G G  ++  A
Sbjct: 8   KFKQGVADFYDRRSRSYDQGQWHPQICDRLLEYA---RIGAGQTVLDIGTGTGYLAIASA 64

Query: 229 RHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +       V  V+I+   ++ A+  I    ++NV + R  ++  
Sbjct: 65  QRVGDQGHVTGVDISPGMLQQAQRKIQRLGLSNVVVQRADAEAL 108


>gi|59802375|ref|YP_209087.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           FA 1090]
 gi|59719270|gb|AAW90675.1| putative 3-demethylubiquinone-9 3-methyltransferase [Neisseria
           gonorrhoeae FA 1090]
          Length = 242

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 38  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++   A     +     ++  H      I 
Sbjct: 98  AALNNVADIEYECVRVEDLAGAEPHSFDVVTCMEMMEHVPDPAAIV 143


>gi|330837037|ref|YP_004411678.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Spirochaeta coccoides DSM 17374]
 gi|329748940|gb|AEC02296.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Spirochaeta coccoides DSM 17374]
          Length = 287

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 79/249 (31%), Gaps = 46/249 (18%)

Query: 80  SLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR 139
           S L  A  +   A +   P L A+L     +   S + ++   +  + ++A +  A  L 
Sbjct: 6   STLARATRLMKDAGLADSPSLDARLLLC-AVMDVSQEQLLARWHTEVPEEASQRFAAMLS 64

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             L A               I   R++   R  V  R LI R                ++
Sbjct: 65  ARLAATPMAY----------ILGWREFYGRRFHVDERVLIPRPD-----------TETLI 103

Query: 200 EWVLAATKGIQ---GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254
           E  LA  +       D+ ++  G+G   + LA      RV   +I+  ++E A  N    
Sbjct: 104 EAALAWIQEHSLEAPDIADICTGSGAVGITLALELPSSRVALTDISASALEVATENAMRL 163

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATVGMV 312
              N+++ +    E                  + S  F  +  +PP             V
Sbjct: 164 GAGNIRLYQGDVTE-----------------PVASESFDIVVSNPPYLTPHWYSHVEAQV 206

Query: 313 QAYPHILYI 321
              P +  +
Sbjct: 207 LKEPRLALV 215


>gi|311063544|ref|YP_003970269.1| Methyltransferase [Bifidobacterium bifidum PRL2010]
 gi|310865863|gb|ADP35232.1| Methyltransferase [Bifidobacterium bifidum PRL2010]
          Length = 442

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +         +     G  G +++L  G G     +AR F R + VE      E A +N 
Sbjct: 82  SQFAAQYKAGIARRVAGAGGAMVDLTGGFGVDCSYIARGFSRAVYVERQPHLCELAAHNF 141

Query: 252 AANHVNNVKIVRMSSKEFTQ--AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            A  + ++ ++   ++++ +     R    +        +     I++DP R        
Sbjct: 142 RALGLPHMDVINGDAEDWLRGVVDARAASADSAAVDSATAVPIALIYLDPARRDAHGGRT 201

Query: 310 GMVQAYPHILYISCNPDSLC-RDLSILSTTHTIERLALF 347
             +          C PD L  +D  +  + H + +L+  
Sbjct: 202 YAIAD--------CTPDVLALKDRLLAVSPHVMVKLSPM 232


>gi|255974679|ref|ZP_05425265.1| methyltransferase [Enterococcus faecalis T2]
 gi|256964102|ref|ZP_05568273.1| methyltransferase small [Enterococcus faecalis HIP11704]
 gi|307274139|ref|ZP_07555347.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0855]
 gi|307278573|ref|ZP_07559644.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0860]
 gi|255967551|gb|EET98173.1| methyltransferase [Enterococcus faecalis T2]
 gi|256954598|gb|EEU71230.1| methyltransferase small [Enterococcus faecalis HIP11704]
 gi|306504739|gb|EFM73938.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0860]
 gi|306509101|gb|EFM78163.1| methyltransferase small domain protein [Enterococcus faecalis
           TX0855]
          Length = 202

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWENLPAGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              L LA    R V  V++ + +V  A+ N   N +  V I   +  E
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYE 119


>gi|225024896|ref|ZP_03714088.1| hypothetical protein EIKCOROL_01784 [Eikenella corrodens ATCC
           23834]
 gi|224942300|gb|EEG23509.1| hypothetical protein EIKCOROL_01784 [Eikenella corrodens ATCC
           23834]
          Length = 289

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +          LL++ CG G  +L LA    R+  ++ +   +     N  A  + N+  
Sbjct: 73  IARMHLRPGDTLLDVGCGPGTLALRLAPKVQRLYGLDYSSGMLRCLESNAQAAGLVNITP 132

Query: 262 VRMSSKE 268
           + +S ++
Sbjct: 133 IHLSKED 139


>gi|117927850|ref|YP_872401.1| HemK family modification methylase [Acidothermus cellulolyticus
           11B]
 gi|117648313|gb|ABK52415.1| modification methylase, HemK family [Acidothermus cellulolyticus
           11B]
          Length = 294

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 18/182 (9%)

Query: 138 LRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
              AL A ++++     A +  ++ L         +V  R L        F         
Sbjct: 55  AAGALPAGRHEVFRQLVARRAQRVPLQHLTG----SVGFRRLELAVGPGVF--VPRPETE 108

Query: 197 HMLEWVLA---ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
            +  W +    A    Q  +++L  G+G  +L +A+     RV AV+    +   A+ N+
Sbjct: 109 VLAGWCIETLRADGPAQPLVVDLCTGSGAIALSIAQEVPAARVFAVDDDPVATAWAQRNV 168

Query: 252 AANHVNNVKIV-RMSSKEFTQAMRREREF-----NRLKDIDIHSYRFKTIFVDPPRSGLD 305
           A   +    +V    +      +  + +        L + D      +    DPPR+   
Sbjct: 169 AGTGLAGRVVVLCADAAVALPELDGQVDLVVANPPYLAEGDRQLLEPEVRDHDPPRALWS 228

Query: 306 DA 307
           DA
Sbjct: 229 DA 230


>gi|330954994|gb|EGH55254.1| SAM-dependent methyltransferase [Pseudomonas syringae Cit 7]
          Length = 398

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 272 MTCIEGDV------------FEALKELKAAEERFDVIVADPPAFIKRKKDMKNGEGAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNEQAMRLLSKDGILVSASC 339


>gi|193216078|ref|YP_001997277.1| Fmu (Sun) domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089555|gb|ACF14830.1| Fmu (Sun) domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 391

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                   +L+++  +G FSL  A      +LAV+I++ +++ A +N   N +       
Sbjct: 213 RPFAQDAHVLDIFTSDGGFSLNAAYGKAKEILAVDISEEALKRAHHNAEINQLK------ 266

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
                  + + +E  F+ ++ ++    +F  + +DPP       TV   + AY  +
Sbjct: 267 ------IENLIKEDAFSFIEKLEHEERKFDLVILDPPSLTKSKKTVSTAIHAYKKL 316


>gi|149377993|ref|ZP_01895718.1| hemK protein [Marinobacter algicola DG893]
 gi|149357702|gb|EDM46199.1| hemK protein [Marinobacter algicola DG893]
          Length = 282

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 71/220 (32%), Gaps = 34/220 (15%)

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLI---YHRLLDDAWRECAIRLRDALHARKYQIQLIG 153
           E LLR     I   T + D  ++      + R    AW E  +             Q   
Sbjct: 9   EALLRKAAAHIGGETPRLDAELLLGFVTGWSRTTFRAWPERELDATLIARFSTLVEQRCE 68

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
                 +  ++++    L V   TLI R                ++E  LA        +
Sbjct: 69  GHPVAHLLGEQEFWSLPLKVNPSTLIPRPD-----------TECLVEAALALDLPANASV 117

Query: 214 LELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           L+L  G G  +L LA  R   +V A +    +V+ A  N A   +               
Sbjct: 118 LDLGTGTGAIALALASERSGWQVSACDAILAAVDLAIDNAARLGLP-------------V 164

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            +++   F+     D+    F  I  +PP    DD  +G 
Sbjct: 165 TVQQSNWFS-----DLPPAVFDLIVSNPPYIAGDDVHLGQ 199


>gi|315656848|ref|ZP_07909735.1| 16S rRNA methyltransferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492803|gb|EFU82407.1| 16S rRNA methyltransferase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 213

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 18/111 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G  G L+++ CG G  +L LA  R   +V AV++   ++E  R N  AN ++N+      
Sbjct: 68  GGSGVLVDVGCGWGPLALTLAAERPSAQVYAVDVNARALELTRANATANGLHNI------ 121

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                Q +     F  L            I+ +PP      A   M +A+ 
Sbjct: 122 -----QVLSEADAFAALG-----PNSVDVIWSNPPVRVGKMALHAMWEAWR 162


>gi|331682701|ref|ZP_08383320.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli H299]
 gi|331080332|gb|EGI51511.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli H299]
          Length = 277

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALACERPDCEITAVDRMPDAVSLAQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDDQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|304389605|ref|ZP_07371567.1| 16S rRNA methyltransferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327158|gb|EFL94394.1| 16S rRNA methyltransferase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 214

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 18/111 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G  G L+++ CG G  +L LA  R   +V AV++   ++E  R N  AN ++N+      
Sbjct: 68  GGSGVLVDVGCGWGPLALTLAAERPSAQVYAVDVNARALELTRANATANGLHNI------ 121

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                Q +     F  L            I+ +PP      A   M +A+ 
Sbjct: 122 -----QVLSEADAFAALG-----PNSVDVIWSNPPVRVGKMALHAMWEAWR 162


>gi|260887903|ref|ZP_05899166.1| precorrin-6y c5,15-methyltransferase [Selenomonas sputigena ATCC
           35185]
 gi|330838764|ref|YP_004413344.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Selenomonas sputigena ATCC 35185]
 gi|260862409|gb|EEX76909.1| precorrin-6y c5,15-methyltransferase [Selenomonas sputigena ATCC
           35185]
 gi|329746528|gb|AEB99884.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Selenomonas sputigena ATCC 35185]
          Length = 195

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 28/164 (17%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL--VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            +  A  G    + ++  G G+ S+   L      V AVE  K +VE  R N A   + N
Sbjct: 28  TLAGAKIGKNDIVCDIGAGTGSLSIEAALLAKAGHVYAVERKKEAVELIRQNAAKFGIEN 87

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           + I+   +    + +    +   +     H            + G               
Sbjct: 88  ITIIESEAPAGLEQLPERLDAAIIGGTGSHLEEILEFLDKRLKPGG-------------F 134

Query: 319 LYISC-NPDSLCRDLSILST--TH----------TIERLALFDQ 349
           + I+C    +L   L+ +     +           ++++  +D 
Sbjct: 135 IVINCITVQTLASSLAYMRKKSGYLYDTVQVQVNRLKKVGPYDM 178


>gi|304388692|ref|ZP_07370752.1| protein-(glutamine-N5) methyltransferase [Neisseria meningitidis
           ATCC 13091]
 gi|254672055|emb|CBA04658.1| heme biosynthesis protein [Neisseria meningitidis alpha275]
 gi|304337359|gb|EFM03533.1| protein-(glutamine-N5) methyltransferase [Neisseria meningitidis
           ATCC 13091]
          Length = 423

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 188 EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 237

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 238 ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 290

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 291 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 334

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 335 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 385


>gi|254671226|emb|CBA08440.1| heme biosynthesis protein [Neisseria meningitidis alpha153]
          Length = 423

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 188 EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 237

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 238 ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 290

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 291 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 334

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 335 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 385


>gi|226361180|ref|YP_002778958.1| hypothetical protein ROP_17660 [Rhodococcus opacus B4]
 gi|226239665|dbj|BAH50013.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 277

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNN 258
                 G    +L++ CG G+ +L  A        V  V+++   +E  R   +   + N
Sbjct: 31  AFQLGLGPGDAVLDVCCGAGSSALPAATAVGPTGLVHGVDLSDELLEQGRVKASERGLQN 90

Query: 259 VKIVRMSSK 267
           ++ V   + 
Sbjct: 91  IEFVCADAT 99


>gi|167580892|ref|ZP_02373766.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           thailandensis TXDOH]
          Length = 217

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++LE+  G+G  + +LA    RV  VEI     + A  N+
Sbjct: 63  PRVEARVLQELAVKKHE---NVLEIGAGSGYMAALLAARGQRVTTVEIDPDLAKFAEENL 119

Query: 252 AANHVNNVKIVRMS 265
             N V N ++V   
Sbjct: 120 KRNGVTNAEVVLGD 133


>gi|146307858|ref|YP_001188323.1| glycosyl transferase family protein [Pseudomonas mendocina ymp]
 gi|145576059|gb|ABP85591.1| glycosyl transferase, family 2 [Pseudomonas mendocina ymp]
          Length = 1759

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
               L+  +         LL++ C +G FSL+ A+    VLA +I +  V  AR      
Sbjct: 31  QREHLQQDIIPLLEGDARLLDIGCADGEFSLLFAQKVAHVLAFDIGEELVAQARERAEHL 90

Query: 255 HVNNVKIVRMSSKEF 269
            + N++       EF
Sbjct: 91  GIGNIEFRVADIFEF 105


>gi|108804210|ref|YP_644147.1| hypothetical protein Rxyl_1372 [Rubrobacter xylanophilus DSM 9941]
 gi|108765453|gb|ABG04335.1| conserved hypothetical protein 95 [Rubrobacter xylanophilus DSM
           9941]
          Length = 177

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
           G++L+LY G G   +  L+R  DR + VE +  +  A R N+    +    ++V   +  
Sbjct: 40  GEVLDLYAGTGALGIEALSRGCDRAVFVEKSPRAAAAIRENLRRTGLEGRARVVVGDAVR 99

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
             + + R+               F  IF DPP         G+++    +L
Sbjct: 100 EMERLLRD------------GKVFNLIFADPPYRIAPAGAEGLLRRAEALL 138


>gi|313139343|ref|ZP_07801536.1| N6-adenine-specific methylase [Bifidobacterium bifidum NCIMB 41171]
 gi|313131853|gb|EFR49470.1| N6-adenine-specific methylase [Bifidobacterium bifidum NCIMB 41171]
          Length = 433

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 11/159 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +         +     G  G +++L  G G     +AR F R + VE      E A +N 
Sbjct: 73  SQFAAQYKAGIARRVAGAGGAMVDLTGGFGVDCSYIARGFSRAVYVERQPHLCELAAHNF 132

Query: 252 AANHVNNVKIVRMSSKEFTQ--AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            A  + ++ ++   ++++ +     R    +        +     I++DP R        
Sbjct: 133 RALGLPHMDVINGDAEDWLRGVVDSRAASADSAAVDSATAVPIALIYLDPARRDAHGGRT 192

Query: 310 GMVQAYPHILYISCNPDSLC-RDLSILSTTHTIERLALF 347
             +          C PD L  +D  +  + H + +L+  
Sbjct: 193 YAIAD--------CTPDVLALKDRLLAVSPHVMVKLSPM 223


>gi|313667695|ref|YP_004047979.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria lactamica
           ST-640]
 gi|313005157|emb|CBN86589.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria lactamica
           020-06]
          Length = 242

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 38  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++   A     +     ++  H      I 
Sbjct: 98  AALNNVADIEYECIRVEDLAGAEPHSFDAVTCMEMMEHVPDPAAIV 143


>gi|309378273|emb|CBX23104.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 238

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 34  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++   A     +     ++  H      I 
Sbjct: 94  AALNNVADIEYECIRVEDLAGAEPHSFDAVTCMEMMEHVPDPAAIV 139


>gi|295394650|ref|ZP_06804869.1| protein-(glutamine-N5) methyltransferase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972543|gb|EFG48399.1| protein-(glutamine-N5) methyltransferase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 300

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 17/177 (9%)

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
             +R  D     K Q      +   ++ L             R L        F  P   
Sbjct: 45  HVLRGTDVPREVKAQYARACESRAQRVPLQHITG----VAPFRYLEMHVGPGVFI-PRPE 99

Query: 194 INVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAAR 248
               M+ + +    G+ GD    ++L  G+G  ++ LA       V AVE++  +     
Sbjct: 100 -TELMVTYAIEHLAGLPGDNHTAIDLCTGSGAIAIALATEVPRTHVHAVELSPDAALYTE 158

Query: 249 YNIAA------NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            NI         H ++V      + EF  A   +        +         +  DP
Sbjct: 159 RNIERYRPTFEAHGSDVIPHLGDATEFLGATSAQVITCNPPYVARTVEHAPEVNSDP 215


>gi|259419236|ref|ZP_05743153.1| SAM-dependent methyltransferase [Silicibacter sp. TrichCH4B]
 gi|259345458|gb|EEW57312.1| SAM-dependent methyltransferase [Silicibacter sp. TrichCH4B]
          Length = 405

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 15/120 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVK 260
            A        +L+++   G F L  LA        V+ +  +++ A    AA+   +  +
Sbjct: 224 AARLVAPGARVLDVFSHVGGFGLAMLAAGAGHATCVDGSAAALDLATAGAAASGHGDRFE 283

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
             +  + +   A+  E              +F  +  DPP        +   ++AY  + 
Sbjct: 284 ARQGDAFDVLTALGAE------------GAQFDVVVCDPPAFAPSKQALEAGLRAYERVA 331


>gi|254489352|ref|ZP_05102555.1| Methyltransferase small domain superfamily protein [Roseobacter sp.
           GAI101]
 gi|214041859|gb|EEB82499.1| Methyltransferase small domain superfamily protein [Roseobacter sp.
           GAI101]
          Length = 229

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGI--NVHMLEWVLAAT----KGIQGDLLELYCGN 220
           V   +        +  I   F   N  +     ML                 +L++ CG 
Sbjct: 21  VRRPVVEKVDGFSFVVIPTVF---NPVVFRAGVMLGRAAGRITLEADERDKTMLDMGCGT 77

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           G      AR+  RV +V+I   +V  A+ N   N 
Sbjct: 78  GIVGAFAARNGFRVTSVDINPDAVRVAKANALLND 112


>gi|300121728|emb|CBK22303.2| unnamed protein product [Blastocystis hominis]
          Length = 256

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKI 261
             +G    +++LY G G F++ +A       VL  EI   SVEA + NI  N   +  ++
Sbjct: 91  EIRGNDEFVVDLYAGIGYFTIPIAVRSGAKHVLCFEINSDSVEALKRNIDQNGVADRCEV 150

Query: 262 VRMS 265
           +   
Sbjct: 151 ILGD 154


>gi|257417546|ref|ZP_05594540.1| methyltransferase [Enterococcus faecalis AR01/DG]
 gi|257159374|gb|EEU89334.1| methyltransferase [Enterococcus faecalis ARO1/DG]
          Length = 202

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRGTVDYGSRVLIDAFEWGNLPAGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA    R V  V++ + +V  A+ N   N +  V I   +  E            
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYE------------ 119

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 ++   +  I  +PP         G++  
Sbjct: 120 -----TLNETTYAAIVSNPPIRAGKKVVHGILTG 148


>gi|220915946|ref|YP_002491250.1| methyltransferase small [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953800|gb|ACL64184.1| methyltransferase small [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 386

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 1/114 (0%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++               ++  G G  +LVLAR   RV+A ++   +V  AR N A   + 
Sbjct: 193 LVGAAAKERPLDGKRAFDVGTGTGVLALVLARAGARVIATDLEPRAVACARENAARLGLA 252

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             ++  + +  F + +      N            +    DP  + L+    G+
Sbjct: 253 G-QVEVVEADLFPEGLADVIVCNPPWIPGPARGPLERAVYDPGGAFLERLVRGL 305


>gi|212710551|ref|ZP_03318679.1| hypothetical protein PROVALCAL_01614 [Providencia alcalifaciens DSM
           30120]
 gi|212686788|gb|EEB46316.1| hypothetical protein PROVALCAL_01614 [Providencia alcalifaciens DSM
           30120]
          Length = 272

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +++ +           LL++ CG G+ SL LA  F  V  ++ +   +E A       ++
Sbjct: 47  YLIRFRQLMDFTGANTLLDVGCGPGSISLYLANQFQSVTGIDYSSGMLEMANIRAKEMNI 106

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            N +          + +  E  ++ L   DI      T+  D
Sbjct: 107 TNAQF---------KPLAWEDGWDELPKADISVASRSTLVDD 139


>gi|120405642|ref|YP_955471.1| type 11 methyltransferase [Mycobacterium vanbaalenii PYR-1]
 gi|119958460|gb|ABM15465.1| Methyltransferase type 11 [Mycobacterium vanbaalenii PYR-1]
          Length = 280

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNV 259
           +AA  G +  +L+L CG G  +L LA           ++I++P + AAR      ++  V
Sbjct: 43  VAAAAGPREQILDLGCGTGATTLALAERLGAHGGCTGIDISEPMIHAARTRARDRNLP-V 101

Query: 260 KIVRMSSKEF 269
           + V   ++ F
Sbjct: 102 EFVVGDAQSF 111


>gi|269968220|ref|ZP_06182250.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827173|gb|EEZ81477.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 250

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               LL++ CG G  ++ L+     V+ ++ + P VE A    AA  V+N+    M + +
Sbjct: 37  QAPSLLDVCCGTGLVTIPLSNKLSHVVGIDFSSPMVEFAIEKSAA--VHNISFCEMDAVD 94

Query: 269 F 269
           F
Sbjct: 95  F 95


>gi|242045762|ref|XP_002460752.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor]
 gi|241924129|gb|EER97273.1| hypothetical protein SORBIDRAFT_02g034350 [Sorghum bicolor]
          Length = 356

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIA 252
           N  +L+ ++       GD +LE+  G GN +  L A H  RV+AVEI    VE+     A
Sbjct: 55  NPRVLDAIVRRAAISSGDAILEVGPGTGNLTARLLASHAARVVAVEIDPRMVESVTARAA 114

Query: 253 ANHVNN-VKIVRMSSKEF 269
           A  + + + ++   + E 
Sbjct: 115 ALGLADKLTVIAGDAVEV 132


>gi|238927384|ref|ZP_04659144.1| ribosomal protein L11 methyltransferase [Selenomonas flueggei ATCC
           43531]
 gi|238884666|gb|EEQ48304.1| ribosomal protein L11 methyltransferase [Selenomonas flueggei ATCC
           43531]
          Length = 322

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 77/225 (34%), Gaps = 18/225 (8%)

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDALHARKYQ 148
           +    RLE  L     +I+ L           + H  + D+ W E     +  +H  K  
Sbjct: 72  LPEDERLESSLLTLTERIEGLRRADAPIGAGTVSHAFVADEDWAETW---KVYIHTEKIG 128

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
            +++ R              E  T +G  ++      +     A     M    L     
Sbjct: 129 RRIVVRPT-----------WEEYTPSGDEIVIDLDPGAAFGTGAHATTAMCLRWLERLVC 177

Query: 209 IQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +  + ++ CG+G  ++  ++     V+A++    +V  A  NI  NHV NV  ++    
Sbjct: 178 SRMRVCDVGCGSGILAIAASKLGAGEVIAMDYDPVAVSVAEENIKQNHVTNVVALQSDLL 237

Query: 268 EFTQAMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              Q M        N + DI I  +     ++ P  + L    + 
Sbjct: 238 AACQGMPPAELITANIIADIIIRLFDQLDQYLAPGGALLASGIID 282


>gi|268318119|ref|YP_003291838.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
 gi|262335653|gb|ACY49450.1| Methyltransferase type 11 [Rhodothermus marinus DSM 4252]
          Length = 237

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVN 257
            LA    ++G  +L+L  G G   L+ AR      RV+ +++    V  AR N     V 
Sbjct: 58  ALAEWTALRGATVLDLGAGAGRDCLLAARQVGPEGRVIGIDLTPEMVALARENARKMGVT 117

Query: 258 NVKIVRMS 265
           NV      
Sbjct: 118 NVIFREGD 125


>gi|161503113|ref|YP_001570225.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160864460|gb|ABX21083.1| hypothetical protein SARI_01178 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 277

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 19/105 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    V AV+    +V  A  N     
Sbjct: 98  LVEQALARLPVKTCRILDLGTGTGAIALALASERPDCDVTAVDRMPDAVALAIRNAEHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + NV+I++               F+ L        +F  I  +PP
Sbjct: 158 IRNVRILQ------------SCWFSALP-----GQQFDMIVSNPP 185


>gi|125570502|gb|EAZ12017.1| hypothetical protein OsJ_01899 [Oryza sativa Japonica Group]
          Length = 271

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
           + ++         + +++ G G  ++  AR    V A ++   +VE    NI  N +   
Sbjct: 86  QRLVDHVFKNSDVVCDVFSGVGPIAISAARKVKYVYANDLNPTAVEYLERNIVLNKLERK 145

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           +++  M ++ F  ++   +  + +          + +   P  +         +    H+
Sbjct: 146 IEVFNMDARRFISSIYSSQHVHPVT---------QVVMNLPNDAAEFLDVFRGISWNHHL 196

Query: 319 LYISC 323
              SC
Sbjct: 197 AVPSC 201


>gi|94971497|ref|YP_593545.1| HemK family modification methylase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553547|gb|ABF43471.1| [protein release factor]-glutamine N5-methyltransferase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 280

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 20/116 (17%)

Query: 195 NVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNI 251
             H++E VL  A + ++ ++L++  G+G  +  LA+ F R  V AV+I+  +++ A+ N 
Sbjct: 97  TEHLIEAVLELAPREVRWEVLDVGTGSGCIAATLAKEFPRMKVTAVDISPEALQIAQANA 156

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           A         V     +   A+                 +F  I  +PP  G  +A
Sbjct: 157 ARLEAQ----VEFRVSDLLSAIE-------------PGRQFDMIVSNPPYVGECEA 195


>gi|73668710|ref|YP_304725.1| ribosomal RNA adenine dimethylase [Methanosarcina barkeri str.
           Fusaro]
 gi|72395872|gb|AAZ70145.1| ribosomal RNA adenine dimethylase [Methanosarcina barkeri str.
           Fusaro]
          Length = 274

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +          +L++  G G  ++ LA     V AVE +   +   + NI A  +NNV  
Sbjct: 53  IQRLDFTTDSKVLDIGSGPGTLTIPLAGMVKHVTAVEPSDGMLYCLKENIKAMGLNNVSW 112

Query: 262 VRMSSKEF 269
           ++   ++ 
Sbjct: 113 IQKKWEDV 120


>gi|66047988|ref|YP_237829.1| hypothetical protein Psyr_4764 [Pseudomonas syringae pv. syringae
           B728a]
 gi|289672466|ref|ZP_06493356.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae
           FF5]
 gi|302188128|ref|ZP_07264801.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. syringae
           642]
 gi|63258695|gb|AAY39791.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|330970967|gb|EGH71033.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aceris
           str. M302273PT]
 gi|330980022|gb|EGH78288.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 398

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 272 MTCIEGDV------------FEALKELKAAEERFDVIVADPPAFIKRKKDMKNGEGAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNEQAMRLLSKDGILVSASC 339


>gi|313680143|ref|YP_004057882.1| hypothetical protein Ocepr_1252 [Oceanithermus profundus DSM 14977]
 gi|313152858|gb|ADR36709.1| Conserved hypothetical protein CHP00095 [Oceanithermus profundus
           DSM 14977]
          Length = 174

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LY G+G   L  A      + VE    +V+  R N     ++ V++V  S+  F +  
Sbjct: 48  LDLYAGSGAVGLEAASEGFEAVLVESDPGAVKTLRENAHKLGLS-VRVVHESADRFLERS 106

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            R               RF  +F+DPP      A +  V     +
Sbjct: 107 AR------------TGERFDVVFLDPPYDQDLAAALARVLEAGIV 139


>gi|220929217|ref|YP_002506126.1| ribosomal protein L11 methyltransferase [Clostridium cellulolyticum
           H10]
 gi|254783296|sp|B8I303|PRMA_CLOCE RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|219999545|gb|ACL76146.1| ribosomal protein L11 methyltransferase [Clostridium cellulolyticum
           H10]
          Length = 316

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M   +L        ++L++ CG G  S++ A+    +V A++I + +V+ AR NI  
Sbjct: 160 TTQMCSILLDKYMKDDTEVLDIGCGTGILSIIAAKLGAKQVEAIDIDEVAVKVARENIEL 219

Query: 254 NH 255
           N 
Sbjct: 220 NQ 221


>gi|86156793|ref|YP_463578.1| HemK family modification methylase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773304|gb|ABC80141.1| [protein release factor]-glutamine N5-methyltransferase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 286

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 43/129 (33%), Gaps = 21/129 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++           G  L+L  G+G   + LA  R   RV+A +++  ++  A  N  
Sbjct: 102 ETELVLEAARDALPEGGAALDLCTGSGALGVSLALERAGARVVATDLSADALVVAEENAR 161

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATVG 310
           A        V +   +   A+R                RF  I  +PP    G  D    
Sbjct: 162 ALGAA----VDLRQGDLWAALR-------------EGERFDVIVSNPPYVPRGELDTLPR 204

Query: 311 MVQAYPHIL 319
            V+  P + 
Sbjct: 205 EVRREPRLA 213


>gi|7157956|gb|AAF37354.1|AF202319_3 BchM [Rhodospirillum rubrum]
          Length = 236

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA-N 254
             +L W+     G    LL+  CG G+F++  AR    V+A++I+   ++ AR   A   
Sbjct: 50  ETLLSWLPDDLSGT--RLLDAGCGTGSFAVEAARRGASVVAIDISPTLIDMARERAAEVT 107

Query: 255 HVNNVKIVRMSSKE 268
               ++       +
Sbjct: 108 GPGRIEFRVGDMLD 121


>gi|89093317|ref|ZP_01166266.1| hypothetical protein MED92_12731 [Oceanospirillum sp. MED92]
 gi|89082296|gb|EAR61519.1| hypothetical protein MED92_12731 [Oceanospirillum sp. MED92]
          Length = 301

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 25/143 (17%)

Query: 187 FTQP------NAGINVHMLE---WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLA 236
           F Q       N+G+ + M E   WV+    G    +L L+     FS+  LA   D V+ 
Sbjct: 106 FYQVKPQRNQNSGLFLDMREGRRWVMQNAGG--KRVLNLFSYTCAFSVAALAGGADHVVN 163

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           V++++ ++   + N   N + + + V+  + +  ++ +R R++            +  I 
Sbjct: 164 VDMSRGAINTGKENHRLNGLQDGR-VKFLAYDLFRSWKRVRQYG----------PYDLIV 212

Query: 297 VDPPRSGLDDATVGMVQAYPHIL 319
           +DPP            + Y  ++
Sbjct: 213 IDPPSFQPGSFVAE--KDYRRVI 233


>gi|312127876|ref|YP_003992750.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777895|gb|ADQ07381.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 288

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 21/133 (15%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIA 252
              ++E  +   KG +    L++  G+G  ++ L +  D +VLAV+I++ ++E AR N  
Sbjct: 105 TEVLVEVAIEIFKGRKNLYFLDIGTGSGCIAVALCKFLDCKVLAVDISERALEVARKNAK 164

Query: 253 ANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATV 309
            N V N +  VR +  E                    + R   I  +PP     +     
Sbjct: 165 LNGVENRISFVRSNLFEDIP----------------KNLRLDAILSNPPYISESERFKLE 208

Query: 310 GMVQAYPHILYIS 322
             V   PHI   S
Sbjct: 209 KQVLKEPHIALFS 221


>gi|296169616|ref|ZP_06851236.1| type 12 methyltransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895882|gb|EFG75577.1| type 12 methyltransferase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 180

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +++          G  L+L CG G+ S+ LA+H  +V  V+ A  +++ AR    A ++ 
Sbjct: 4   LVQGTNDTPPLPPGSALDLGCGTGDSSIYLAQHGWKVTGVDFAPRALDKAR--AKAANLP 61

Query: 258 NVKIVRMSSKEFTQA 272
            V  VR      +QA
Sbjct: 62  -VDFVRADVTRLSQA 75


>gi|240079789|ref|ZP_04724332.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           FA19]
 gi|240114743|ref|ZP_04728805.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           PID18]
 gi|240116943|ref|ZP_04731005.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           PID1]
 gi|240122584|ref|ZP_04735540.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           PID332]
 gi|240127287|ref|ZP_04739948.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260441444|ref|ZP_05795260.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           DGI2]
          Length = 238

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 34  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++   A     +     ++  H      I 
Sbjct: 94  AALNNVADIEYECVRVEDLAGAEPHSFDVVTCMEMMEHVPDPAAIV 139


>gi|256821857|ref|YP_003145820.1| HemK family modification methylase [Kangiella koreensis DSM 16069]
 gi|256795396|gb|ACV26052.1| modification methylase, HemK family [Kangiella koreensis DSM 16069]
          Length = 286

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 14/109 (12%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYC 218
           I  ++++    L V   TLI R                ++E  L      +   +++L  
Sbjct: 80  IIGEQEFWSLTLNVTRDTLIPRPE-----------TEMLVEQALLRIPSDESYSIVDLGT 128

Query: 219 GNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G+G  +L +A  R    V A+++++ +++ A+ N  +N ++NV   + S
Sbjct: 129 GSGAIALAIASERPQATVWALDMSELALKVAQANAESNQIDNVTFEQGS 177


>gi|325689727|gb|EGD31731.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           SK115]
          Length = 276

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 84/242 (34%), Gaps = 48/242 (19%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           +  L  E++A       L      ++ L+        T    +L  +  +E   +L+   
Sbjct: 7   LAELEQELLAAGEEAENLSFVYRALNELS-------FTDFVLKLRTEVSQEDHKQLKAI- 58

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                Q QL+       I    D+    L V  R LI R                ++E +
Sbjct: 59  -----QEQLLAHKPAQYIIGSSDFHGLTLKVDERVLIPRPE-----------TEELVELI 102

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L+        +L++  G+G  +L LA  R   ++ A +++  ++  A  N     + N+ 
Sbjct: 103 LSENPESSLSVLDIGTGSGAIALTLANSRPDWQITASDLSNDALALAAENAQFCRL-NLA 161

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPH 317
            V+    +  Q                   +F  I  +PP    +  D+  + ++ + PH
Sbjct: 162 FVQSDCLDAIQG------------------KFDIIVSNPPYISEADKDEVGLNVLTSEPH 203

Query: 318 IL 319
           + 
Sbjct: 204 MA 205


>gi|325199156|gb|ADY94612.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis G2136]
          Length = 273

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|313679089|ref|YP_004056828.1| rRNA (guanine-n(2)-)-methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313151804|gb|ADR35655.1| rRNA (guanine-N(2)-)-methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 381

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 2/118 (1%)

Query: 208 GIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMS 265
                +L L+  NG FS+  LA       +V++++ ++  AR N   N +    + VR  
Sbjct: 204 AAGARVLNLFAYNGGFSVYALAGGAAFARSVDVSEGALADARENARLNGLAERHEAVRAD 263

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
             EF  A     +   L    +   R +          L    +  V+    +   SC
Sbjct: 264 VFEFLNAHEETYDLVVLDPPALAKKRAQLRSALRAYVRLGAGAMRRVRPGGLLAAASC 321


>gi|312137230|ref|YP_004004567.1| dimethyladenosine transferase [Methanothermus fervidus DSM 2088]
 gi|311224949|gb|ADP77805.1| dimethyladenosine transferase [Methanothermus fervidus DSM 2088]
          Length = 283

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 191 NAGINVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N  IN ++   ++  A    +  +LE+  G G  ++ +A++  +V+A+E     VE  + 
Sbjct: 29  NFLINEYIRNKIINYANLNKKDTVLEIGPGIGTLTIPMAKYAKKVIAIEKDCKMVEILKD 88

Query: 250 NIAANHVNNVKIVRMSS 266
            I    ++N++I+   +
Sbjct: 89  RIHDLKIDNIEIINADA 105


>gi|221632271|ref|YP_002521492.1| putative S-adenosylmethionine (SAM)-dependent methyltransferase
           [Thermomicrobium roseum DSM 5159]
 gi|221155603|gb|ACM04730.1| putative S-adenosylmethionine (SAM)-dependent methyltransferase
           [Thermomicrobium roseum DSM 5159]
          Length = 269

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E  LA  +     +LE+ CG G     LAR    V  V+ +   +  AR  + A  + +
Sbjct: 26  IEVYLAFAQRTGDPILEIGCGTGRLLAPLARSGYTVHGVDRSPAMLARARERLRAEGLEH 85

Query: 259 VKIVRMSSKEFTQ 271
           V++ +  + +   
Sbjct: 86  VQLFQADAVDLRP 98


>gi|162457280|ref|YP_001619647.1| hypothetical protein sce8995 [Sorangium cellulosum 'So ce 56']
 gi|161167862|emb|CAN99167.1| hypothetical protein sce8995 [Sorangium cellulosum 'So ce 56']
          Length = 387

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E V     G++   L+L CG G  +  + R     + ++     VE A     A  ++NV
Sbjct: 200 ELVTLVDPGVEERCLDLGCGTGRLTREMGRRCHESIGIDATAAMVERAAQRAKALGLDNV 259

Query: 260 KIVRMSSKEF 269
                 +   
Sbjct: 260 TFREALATRL 269


>gi|145224776|ref|YP_001135454.1| putative methyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|315445106|ref|YP_004077985.1| methyltransferase [Mycobacterium sp. Spyr1]
 gi|145217262|gb|ABP46666.1| putative methyltransferase [Mycobacterium gilvum PYR-GCK]
 gi|315263409|gb|ADU00151.1| putative methyltransferase [Mycobacterium sp. Spyr1]
          Length = 174

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 17/137 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   M   + A        +L+LY G+G   L  L+R    VL VE    +      NIA
Sbjct: 17  VREAMFNLLSARIDFSGIRVLDLYAGSGALGLEALSRGARSVLFVESDARAASVIEQNIA 76

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           A       + R S      A                +     +  DPP          MV
Sbjct: 77  ALGARGATVRRGSVAAVLSAG--------------AATPVDLVLADPPYEVDAAQVADMV 122

Query: 313 QAYPHILYISCNPDSLC 329
            A  +  + S  P ++ 
Sbjct: 123 DALDNAGWAS--PGTVA 137


>gi|332298241|ref|YP_004440163.1| rRNA (guanine-N(2)-)-methyltransferase [Treponema brennaborense DSM
           12168]
 gi|332181344|gb|AEE17032.1| rRNA (guanine-N(2)-)-methyltransferase [Treponema brennaborense DSM
           12168]
          Length = 359

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 7/131 (5%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV---KIVRMSS 266
             +L L+C  G+FS+  A+     V +V+++   +  AR N+  N   +    + VR  +
Sbjct: 191 KRVLNLFCYTGSFSVYAAQGGAASVDSVDLSNTYLGWARRNMELNEFTDQARYRFVRADA 250

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATVGMVQAYPHILYISCN 324
             F +  + + +   L      + +     +D  R  + L    + ++     +LY S N
Sbjct: 251 ASFLKTAKEKWDIIILDPPTFSNSKKTETELDVNRDWAALATDCLNLLSGGG-VLYFSTN 309

Query: 325 PDSLCRDLSIL 335
              L  D + L
Sbjct: 310 SRKLVFDAAAL 320


>gi|224282622|ref|ZP_03645944.1| hypothetical protein BbifN4_02239 [Bifidobacterium bifidum NCIMB
           41171]
 gi|310287082|ref|YP_003938340.1| methyltransferase domain [Bifidobacterium bifidum S17]
 gi|313139781|ref|ZP_07801974.1| 16S RNA methylase RsmC [Bifidobacterium bifidum NCIMB 41171]
 gi|309251018|gb|ADO52766.1| Conserved hypothetical protein with methyltransferase domain
           [Bifidobacterium bifidum S17]
 gi|313132291|gb|EFR49908.1| 16S RNA methylase RsmC [Bifidobacterium bifidum NCIMB 41171]
          Length = 217

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 22/115 (19%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
               G LL+L CG G  SL LA       V AV++ + +++  R N  +N   ++     
Sbjct: 71  PPETGTLLDLGCGWGPVSLALAFASPKADVWAVDVNERALDLTRANAKSNGCEHIHAAS- 129

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
                              +       F  I+ +PP R G D     ++   P +
Sbjct: 130 ------------------PEQVPADLTFDAIWSNPPIRIGKDALHDLLMTWLPRL 166


>gi|20092161|ref|NP_618236.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
 gi|19917387|gb|AAM06716.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
          Length = 274

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
               +  Y+  E      N  +     E             L++  G G+ ++ LA+   
Sbjct: 28  YDDESASYQFSE------NPYVWKDGKERCRTIGMQNDWTALDIGAGAGSMTVPLAKICK 81

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           RV AVE +K        N+    ++NV+I+    ++  + + R  
Sbjct: 82  RVTAVEPSKTMARILSSNLKKAGLDNVQIINSRWEDAPEEIERHD 126


>gi|330815768|ref|YP_004359473.1| Protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           gladioli BSR3]
 gi|327368161|gb|AEA59517.1| Protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           gladioli BSR3]
          Length = 217

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   ML+ +          +LE+  G+G  + +LA     V+ V+I    V+ A  N+
Sbjct: 63  PRVEARMLQELAVKKHES---ILEIGAGSGYMAALLAHRGQHVVTVDIDPALVQFATDNL 119

Query: 252 AANHVNNVKIVRMSSK 267
             N V+N ++V   + 
Sbjct: 120 RDNGVSNAEVVLADAA 135


>gi|254561604|ref|YP_003068699.1| hypothetical protein METDI3191 [Methylobacterium extorquens DM4]
 gi|254268882|emb|CAX24843.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 341

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV 256
           LE    A       + ++ CG+G   +++A+      V+ V+I   ++ AAR N     V
Sbjct: 148 LEERARAGHPAPRRVADIGCGSGAAGILVAKRLPEAEVVLVDINPAALRAARINARLAGV 207

Query: 257 NNVKIVRMSS 266
           +NV+ V    
Sbjct: 208 DNVRPVHSDM 217


>gi|305682209|ref|ZP_07405013.1| RNA methyltransferase, RsmD family [Corynebacterium matruchotii
           ATCC 14266]
 gi|305658682|gb|EFM48185.1| RNA methyltransferase, RsmD family [Corynebacterium matruchotii
           ATCC 14266]
          Length = 193

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 15/108 (13%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L+ G+G   L   +R    V+ VE    +    R N  A    NV++++M++  +  
Sbjct: 47  VLDLFAGSGALGLEAASRGAAEVVLVESDPHTCAVIRRNAEAVGHPNVQVMQMAASAYVA 106

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
              R+               F  +  DPP     +  V M++A   +L
Sbjct: 107 QAPRKY--------------FDMVLADPPYDLAPETVVEMLEALRPLL 140


>gi|224109086|ref|XP_002315078.1| predicted protein [Populus trichocarpa]
 gi|222864118|gb|EEF01249.1| predicted protein [Populus trichocarpa]
          Length = 387

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 15/107 (14%)

Query: 212 DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L++ C +G F+L  A      V  V+ + P++E AR NI  N+++   +  +R  + +
Sbjct: 213 KVLDICCYSGGFALNAAHGGAIDVTGVDTSMPALELARENIVLNNLDPGRISFLREDAIQ 272

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           F +      E             +  + +DPP+       +      
Sbjct: 273 FMKGALSRNE------------SWDIVILDPPKLAPRKKVLQNASGM 307


>gi|170781618|ref|YP_001709950.1| hypothetical protein CMS_1213 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156186|emb|CAQ01328.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 205

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 22/116 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +G LL++ CG G  +L LA       V AV++ + ++E  R N  +  ++NV  V  
Sbjct: 57  PPAEGHLLDVGCGWGPVALDLAIRAPSATVWAVDVNERALELTRANARSLGLDNVNAV-- 114

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
                            L         F T++ +PP R G +     ++   P + 
Sbjct: 115 -----------------LPGDVPEGLSFATVWSNPPIRVGKEVLHQILLDWMPRLA 153


>gi|115695312|ref|XP_001199139.1| PREDICTED: similar to MGC80481 protein [Strongylocentrotus
            purpuratus]
 gi|115740951|ref|XP_791145.2| PREDICTED: similar to MGC80481 protein [Strongylocentrotus
            purpuratus]
          Length = 1449

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 16/233 (6%)

Query: 53   HDGDDLYHIMFDQQTKERMRIDY----FMPGSLLINALMIEMMATIRLEPLLRAKLFQID 108
            H        M D+   + + ID              A     M +        AKL  I 
Sbjct: 1141 HSNKQADQTMDDEVQSKDICIDEKGDALPIDLPKQAASEQNTMPSASGTIQTVAKLEDIK 1200

Query: 109  YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168
               ++ +   V      + DD  +      +        +  + G +        + Y  
Sbjct: 1201 KEENRVNAEEVVREKGEVKDDDQKSKPKAKQRRQRKYTSKHDIAGGSKHLNKYWAQRY-- 1258

Query: 169  ERLTVAGRTLIYRQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
             RL       I +  E  +       I  H  E            +++ +CG+G  ++  
Sbjct: 1259 -RLFSRFDEGI-KLDEEGWYSVTPERIAEHQAERCRCDL------IVDAFCGSGGNAIQF 1310

Query: 228  ARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREF 279
            A   +RV+AV+I    +E AR+N     V + ++ +     +    ++ +  F
Sbjct: 1311 AFTCERVVAVDIDPAKIELARHNATVYGVEDRIEFIVGDFFKVADYLKADVVF 1363


>gi|328887293|emb|CCA60532.1| Uncharacterized methyltransferase [Streptomyces venezuelae ATCC
           10712]
          Length = 229

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 18/106 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              + E +         D+L++  G G  +L  AR   RV+AV+++  +V AA+ N    
Sbjct: 29  TRLLAEALSREELDATTDVLDIGTGTGALALCAARTGARVVAVDVSWRAVIAAKLNA--- 85

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +   + +R+   +F+                +   RF  I  +PP
Sbjct: 86  -IRQGQRLRVLHGDFSTR--------------VQGRRFDLILTNPP 116


>gi|322368113|ref|ZP_08042682.1| methyltransferase [Haladaptatus paucihalophilus DX253]
 gi|320552129|gb|EFW93774.1| methyltransferase [Haladaptatus paucihalophilus DX253]
          Length = 333

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
               + +++ G G F+L +AR    V AVE    S +    N   N V + +   R   +
Sbjct: 185 PDERVFDMFAGIGYFTLPMARAGANVTAVERNPASFKFLVENAMLNDVPDRIDAYRADCR 244

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           E         E   +   D H Y    +    P
Sbjct: 245 EMADV---RVERVVMGYYDAHEYLDTALAALEP 274


>gi|168218269|ref|ZP_02643894.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
 gi|182379728|gb|EDT77207.1| conserved hypothetical protein [Clostridium perfringens NCTC 8239]
          Length = 256

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 59/160 (36%), Gaps = 33/160 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           A    +  +L+L  G G    ++   ++   V+ +EI +   E A  +   N++ + V  
Sbjct: 49  ANVNRKHSVLDLCTGTGIIPFIIYGKKNPKEVVGIEIQEEFAEMANRSAKINNIQDKVSF 108

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPH 317
           V    K+              K+++    +F  + V+PP    +   V     +  A   
Sbjct: 109 VCGDLKD--------------KELNKSMPKFDVVTVNPPYKLNNAGIVNPEDKLAIARHE 154

Query: 318 ILYISCN-----PDS--LCRDLSILSTTHTIERLALFDQF 350
           I+   CN       S    +D   L   H  ERLA  D F
Sbjct: 155 IM---CNLEDVIAASRRFLKDNGRLYMVHRPERLA--DIF 189


>gi|302868451|ref|YP_003837088.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302571310|gb|ADL47512.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 236

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           G    +++ V+   +     LL++ CG G     L+R F  V  +E+A+P  E AR    
Sbjct: 22  GAEAVLVDEVVRRHRPAARTLLDVACGTGAHLEALSRRFAHVEGLELAEPMRERARL--- 78

Query: 253 ANHVNNVKIVRMSSKEF 269
              +  V I     ++F
Sbjct: 79  --RLPGVHIRAGDMRDF 93


>gi|325205014|gb|ADZ00468.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis M01-240355]
          Length = 273

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|331662615|ref|ZP_08363538.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli TA143]
 gi|331061037|gb|EGI33001.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli TA143]
          Length = 277

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAVSLAQRNAQNLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|315505173|ref|YP_004084060.1| methyltransferase type 11 [Micromonospora sp. L5]
 gi|315411792|gb|ADU09909.1| Methyltransferase type 11 [Micromonospora sp. L5]
          Length = 236

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           G    +++ V+   +     LL++ CG G     L+R F  V  +E+A+P  E AR    
Sbjct: 22  GAEAVLVDEVVRRHRPAARTLLDVACGTGAHLEALSRRFAHVEGLELAEPMRERARL--- 78

Query: 253 ANHVNNVKIVRMSSKEF 269
              +  V I     ++F
Sbjct: 79  --RLPGVHIRAGDMRDF 93


>gi|284163359|ref|YP_003401638.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284013014|gb|ADB58965.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 226

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LE +          +L+  CG G  SL+LA     V  V+ A   +E AR    A   ++
Sbjct: 44  LEVLRERIGDEPRRVLDAGCGTGVLSLLLAELGHDVTGVDFAPSMLERAREKARATD-HS 102

Query: 259 VKIVRMSSKEFT 270
           ++  R  ++   
Sbjct: 103 IEFHRGDAESLA 114


>gi|225848840|ref|YP_002729004.1| PUA domain containing protein [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644387|gb|ACN99437.1| PUA domain containing protein [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 390

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 14/121 (11%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            V+         +L+L+  +G F +    +  D V  V+I+  +V     N+  N++ N 
Sbjct: 208 KVIYDYCQEGFKVLDLFSNSGGFGIHCGIKKADFVKFVDISSAAVNQIEKNLKINNLKNY 267

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
           +I++    +F            LK       ++  + +DPP          G ++ + ++
Sbjct: 268 EIIKEDVFDF------------LKQEVKSGDKYDIVILDPPPFAKTKNEVEGALRGFKYL 315

Query: 319 L 319
           +
Sbjct: 316 I 316


>gi|221639714|ref|YP_002525976.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           KD131]
 gi|221160495|gb|ACM01475.1| Magnesium protoporphyrin O-methyltransferase BchM [Rhodobacter
           sphaeroides KD131]
          Length = 228

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--SKEF 269
            +L+  CG G  +  LA    +V+AV+I+   VE AR  + A H + V        + + 
Sbjct: 68  RVLDAGCGAGQMTAELAARGAQVMAVDISPQLVEIARKRLPAAHQDRVTFASGDMLADDL 127

Query: 270 --TQAMRREREFNRLKDIDIHS--------YRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                +          D DI +         R   +F   PR+    A   M + +P 
Sbjct: 128 GRFDYVVAMDSLIYYTDADIAAALDRLGARTRHSVVFTVAPRTPFLMAFWTMGKLFPR 185


>gi|315230482|ref|YP_004070918.1| methyltransferase [Thermococcus barophilus MP]
 gi|315183510|gb|ADT83695.1| methyltransferase [Thermococcus barophilus MP]
          Length = 250

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L CG G  ++ LAR    V+ +++ +  +  AR       + N++ +   + + 
Sbjct: 43  KKVLDLACGTGIPTVELARRGYEVVGLDLHEEMLRVARRKAQELGL-NIEFIHGDALDI 100


>gi|18309261|ref|NP_561195.1| hypothetical protein CPE0279 [Clostridium perfringens str. 13]
 gi|168207833|ref|ZP_02633838.1| conserved hypothetical protein [Clostridium perfringens E str.
           JGS1987]
 gi|18143937|dbj|BAB79985.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170660846|gb|EDT13529.1| conserved hypothetical protein [Clostridium perfringens E str.
           JGS1987]
          Length = 256

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 33/160 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           A    +  +L+L  G G    ++   ++   V+ +EI +   E A  +   N++ + V  
Sbjct: 49  ANVNRKHSVLDLCTGTGIIPFIIYGKKNPKEVVGIEIQEEFAEMANRSAKINNIEDKVSF 108

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPH 317
           V    K+              K++     +F  + V+PP    +   V     +  A   
Sbjct: 109 VCGDLKD--------------KELSKSMPKFDVVTVNPPYKLNNAGIVNPEDKLAIARHE 154

Query: 318 ILYISCN-----PDS--LCRDLSILSTTHTIERLALFDQF 350
           I+   CN       S    +D   L   H  ERLA  D F
Sbjct: 155 IM---CNLEDVIAASRRFLKDNGRLYMVHRPERLA--DIF 189


>gi|326201637|ref|ZP_08191508.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
 gi|325988237|gb|EGD49062.1| Methyltransferase type 11 [Clostridium papyrosolvens DSM 2782]
          Length = 270

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 37/88 (42%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           D+L++ CG G +S+ +A     V  V+I+   +E  +       ++N+ + +    +F+ 
Sbjct: 59  DVLDIGCGAGAYSIAIADRVRTVTGVDISSKMIEHGKKKALELRLDNINLFQADWNQFSL 118

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDP 299
              R      L    +      ++ ++ 
Sbjct: 119 EDNRYDAHFDLVFAHMTPAVSDSVALEK 146


>gi|29831531|ref|NP_826165.1| hypothetical protein SAV_4988 [Streptomyces avermitilis MA-4680]
 gi|29608647|dbj|BAC72700.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 390

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 47/145 (32%), Gaps = 17/145 (11%)

Query: 187 FTQPN-------AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           F  PN       A +  H     L   +     + +L CG G  ++ LAR   RVLAV+ 
Sbjct: 71  FFTPNGVEQSTRAAVATH---RALRLRELGVTSVADLCCGIGGDAIALARAGIRVLAVDR 127

Query: 240 AKPSVEAARYNIAANHVNNVKIVR-MSSKEFTQAMRR------EREFNRLKDIDIHSYRF 292
              +   AR N     + ++  VR     E              R   R +  D  +Y  
Sbjct: 128 DPLTAAVARANAGELGLTDLIEVREADVTEVDPGPYDAVFVDPARRGGRGRVFDPEAYSP 187

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPH 317
              +          A + +    PH
Sbjct: 188 PLSWAIGTALAAPRAALKIAPGIPH 212


>gi|52143350|ref|YP_083478.1| methyltransferase [Bacillus cereus E33L]
 gi|51976819|gb|AAU18369.1| conserved hypothetical protein; possible methyltransferase
           [Bacillus cereus E33L]
          Length = 237

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +LE ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N    
Sbjct: 28  AYLLLEKLVLQYAPPHSHILDLCCGTGHLTKKLIDNSFVVTGIDGSAQMIEYARQNA--- 84

Query: 255 HVNNVKIVRMSSKEF 269
              +   +   ++ F
Sbjct: 85  --PDATFIVDDARYF 97


>gi|330468038|ref|YP_004405781.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Verrucosispora maris AB-18-032]
 gi|328811009|gb|AEB45181.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Verrucosispora maris AB-18-032]
          Length = 526

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 15/162 (9%)

Query: 168 DERLTVAGRTLIYRQIENSFT-QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           +E  T AG    Y++    ++ +PN  +       V  A +   G  L++ CG G  ++ 
Sbjct: 319 EEAFTEAGWEQRYQERPAVWSGRPNPQL-------VAEAAELTPGRALDVGCGEGADTVW 371

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           LA    RV  V+I+K +++ A  +         + +     +  +    E  ++ +    
Sbjct: 372 LAERGWRVTGVDISKTALQRAAQHAREVGEQVAQRIEWVHTDLLRGELDEGAYDLVSAQF 431

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328
           +H           PR  L       V     +L +  +P  L
Sbjct: 432 MH-------LPPQPRRELYARLAAAVAPGGRLLIVGHHPQDL 466


>gi|327482706|gb|AEA86016.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 398

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+L+   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARLAPYVKGKRVLDLFSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGVAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  V   + E  + ++   E            RF  +  DPP                  
Sbjct: 272 MTCVEGDAFEAMKELKNAEE------------RFDVVITDPPAFIKRKKDLKNGEAAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNETAMRLLNKDGILVSASC 339


>gi|320353361|ref|YP_004194700.1| type 11 methyltransferase [Desulfobulbus propionicus DSM 2032]
 gi|320121863|gb|ADW17409.1| Methyltransferase type 11 [Desulfobulbus propionicus DSM 2032]
          Length = 260

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L  G G    + AR       V+ V++    +  AR N A N   NV+      +  
Sbjct: 78  VLDLGSGAGFDCFLAARQVGESGHVIGVDMTPEMLSKARANAANNGYRNVEFRLGEIEHL 137

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTI 295
             A            I++   + +  
Sbjct: 138 PVADNAVDVILSNCVINLSPDKPQVF 163


>gi|86609554|ref|YP_478316.1| Mg-protoporphyrin IX methyl transferase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558096|gb|ABD03053.1| magnesium protoporphyrin O-methyltransferase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 221

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 16/110 (14%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGN 222
           R Y +E +    + +                    +E VL       G  + +  CG G+
Sbjct: 21  RIYGEEEVNFVQKDIRLGH-------------ARTVETVLQWLGDPSGLRICDAGCGVGS 67

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYN--IAANHVNNVKIVRMSSKEFT 270
            SL LA    +V A +I++  V  AR    +     +N        +E T
Sbjct: 68  LSLPLATRGAQVFASDISEQMVNEARRRQQMELGSTDNPHFWVSDLEELT 117


>gi|323345539|ref|ZP_08085762.1| ribosomal protein L11 methyltransferase [Prevotella oralis ATCC
           33269]
 gi|323093653|gb|EFZ36231.1| ribosomal protein L11 methyltransferase [Prevotella oralis ATCC
           33269]
          Length = 305

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 83/255 (32%), Gaps = 22/255 (8%)

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           +D+ +     I  +  E++A    E    +     + +       ++       L   + 
Sbjct: 25  VDFIISCKEEIKDMAKELLADAAGEAGFESFEDTENGIKGYVQTDMLDHNMLGELIRNFI 84

Query: 133 ECAIRLRDALHARKYQIQLIGRANK--TKICLDRDYVD-----ERLTVAGRTLIYRQIEN 185
              + +   L   + +        +    I +  D V      + LT   +  I    + 
Sbjct: 85  LPDVNISYTLSPMEDRNWNEEWEKQGFEPIVIGNDIVIYDAKHDSLTDDDKITIGIDTKQ 144

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSV 244
           +F          M+   L      +  +L+  CG G   +  L     + +  +I + SV
Sbjct: 145 AFG-TGTHETTRMIISALLTIDIKEKRILDCGCGTGILGIAALKLGAAQAVGYDIDEWSV 203

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             +++N   N ++N++++  +    T         N + DI + +     +  D P    
Sbjct: 204 NNSKHNAQINRIDNMQVLHGNVHVLTHV-------NGIFDIVLANINRNILLADLP---- 252

Query: 305 DDATVGMVQAYPHIL 319
             A   ++     I+
Sbjct: 253 --AFKEVLSKQGTII 265


>gi|292493192|ref|YP_003528631.1| hypothetical protein Nhal_3193 [Nitrosococcus halophilus Nc4]
 gi|291581787|gb|ADE16244.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
          Length = 398

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 82/259 (31%), Gaps = 39/259 (15%)

Query: 80  SLLINALMIEM--MATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHRLLDDAWRE 133
           SLLI+ L + +     +  +P  R    + D L      + D  +V  I    ++     
Sbjct: 81  SLLIHRLKVALSLRDRLFADPYYRLVFGESDGLPGLVVDRYDNILVVQITTAGMEQVKEA 140

Query: 134 CAIRLRDALHARKYQIQLIGRAN-----KTKICLDRDYVDERLTVAGRTLIYRQIENS-- 186
               L   +  +   ++           ++ + + +  V E   +      ++       
Sbjct: 141 IIAALNKTIPGQAIILRNDTPIRLLEGLQSYLEIVQGEVPEAAPLHENGGHFKVPLMGGQ 200

Query: 187 ----FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAK 241
               F         H L             +L+ +   G + +  L     +VL VE ++
Sbjct: 201 KTGWFF-------DHRLNRARMQHYVKGKRVLDAFSYLGAWGIQALVAGAHQVLCVESSE 253

Query: 242 PSVEAARYNIAAN-HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +V    +N   N   + V  +   +     A++ ++E            RF  + +DPP
Sbjct: 254 TAVNFIHHNAKLNPRASAVTALHGEAFSLLNALQADKE------------RFDAVILDPP 301

Query: 301 RSGLDDATVGM-VQAYPHI 318
                   +   + AY  +
Sbjct: 302 ALIKRKKDLKQGLTAYRRL 320


>gi|294781520|ref|ZP_06746858.1| methyltransferase small domain protein [Enterococcus faecalis
           PC1.1]
 gi|294451377|gb|EFG19841.1| methyltransferase small domain protein [Enterococcus faecalis
           PC1.1]
          Length = 202

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 18/154 (11%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D       + GRT  +      F++        +L           G LL++ CG G
Sbjct: 12  LAHDLESWSFPLRGRTFQFTTDSGVFSRETVDYGSRVLIDAFEWENLPAGRLLDVGCGYG 71

Query: 222 NFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA    R V  V++ + +V  A+ N   N +  V I   +  E            
Sbjct: 72  PIGLSLAAATGRLVEMVDVNQRAVGLAQMNAQRNQITTVDIHSSNVYE------------ 119

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                 ++   +  I  +PP         G++  
Sbjct: 120 -----TLNETTYAAIVSNPPIRAGKKVVHGILTG 148


>gi|268598048|ref|ZP_06132215.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           MS11]
 gi|268582179|gb|EEZ46855.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           MS11]
          Length = 242

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 38  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++   A     +     ++  H      I 
Sbjct: 98  AALNNVADIEYECIRVEDLAGAEPHSFDVVTCMEMMEHVPDPAAIV 143


>gi|240015651|ref|ZP_04722191.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           FA6140]
          Length = 238

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 34  HDINPLRLDYIDGHADLCGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++   A     +     ++  H      I 
Sbjct: 94  AALNNVADIEYECIRVEDLAGAEPHSFDVVTCMEMMEHVPDPAAIV 139


>gi|269837716|ref|YP_003319944.1| 50S ribosomal protein L11 methyltransferase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786979|gb|ACZ39122.1| ribosomal protein L11 methyltransferase [Sphaerobacter thermophilus
           DSM 20745]
          Length = 312

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV- 256
           L W+       +  LL+   G+G  S+  +AR    V AVEI   +V+A R+N+  N V 
Sbjct: 163 LRWLEELPVEGK-TLLDAGAGSGILSIAAIARGAAHVDAVEIDPVAVKALRHNLDLNQVT 221

Query: 257 NNVKIVRMSSKEFTQ 271
           + V++++    E  +
Sbjct: 222 DRVRVIQGDVVEVVE 236


>gi|237730884|ref|ZP_04561365.1| methyltransferase type 11 [Citrobacter sp. 30_2]
 gi|226906423|gb|EEH92341.1| methyltransferase type 11 [Citrobacter sp. 30_2]
          Length = 267

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 1/101 (0%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ +LA   G    +L+   G G  ++++A+    V   +++   V  A+       V +
Sbjct: 34  LDKLLADYAGQTLRVLDAGGGEGQTAILMAQRGHHVTLCDLSAEMVARAQRAAEEQGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           N+  +  ++++  Q +  + +      +       + +   
Sbjct: 94  NMHFIHCAAQDIPQHLDSQVDLILFHAVLEWVADPQAVLKT 134


>gi|260829457|ref|XP_002609678.1| hypothetical protein BRAFLDRAFT_123579 [Branchiostoma floridae]
 gi|229295040|gb|EEN65688.1| hypothetical protein BRAFLDRAFT_123579 [Branchiostoma floridae]
          Length = 1095

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 213  LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
            +++ +CG G  ++  A   +RV+A++I    +E AR+N A     + ++ ++       +
Sbjct: 941  IIDAFCGVGGNAIQFAFTCERVIAIDIDPVKLECARHNAAIYGVADRIEFLQGDYLHLAE 1000

Query: 272  AMRREREF 279
             ++ +  F
Sbjct: 1001 GLKADVVF 1008


>gi|170683182|ref|YP_001743982.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli SMS-3-5]
 gi|218699919|ref|YP_002407548.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli IAI39]
 gi|170520900|gb|ACB19078.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli SMS-3-5]
 gi|218369905|emb|CAR17680.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli IAI39]
          Length = 277

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDCMPDAVSLAQRNAQNLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|163757829|ref|ZP_02164918.1| hypothetical protein HPDFL43_20502 [Hoeflea phototrophica DFL-43]
 gi|162285331|gb|EDQ35613.1| hypothetical protein HPDFL43_20502 [Hoeflea phototrophica DFL-43]
          Length = 424

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 12/109 (11%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           M + +  A + ++  +L L+   G  SLV A+    V  V+ +K ++  AR N A   + 
Sbjct: 238 MADQITQAKRPLK--VLNLFGYTGVASLVAAKAGAEVTHVDASKKAIGWARENQALAGLE 295

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           + + VR   ++  + + RE              R+  I  DPP+ G   
Sbjct: 296 D-RPVRWICEDAMKFIAREER---------RGSRYDIILTDPPKFGRGP 334


>gi|150020095|ref|YP_001305449.1| ribosomal L11 methyltransferase [Thermosipho melanesiensis BI429]
 gi|259534597|sp|A6LJG3|PRMA_THEM4 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|149792616|gb|ABR30064.1| ribosomal L11 methyltransferase [Thermosipho melanesiensis BI429]
          Length = 258

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 11/102 (10%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIEN-SF---TQPNAGINVHMLEWVLAATKGIQGDLLELY 217
           +D  Y+D         L+ R     +F         +   +L+  L        D+L+L 
Sbjct: 83  IDGVYIDPDYHEINDKLVIRITPGLAFGTGLHTTTKLAATLLKKYLRQGM----DVLDLG 138

Query: 218 CGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVN 257
           CG+G  S+ LA+      VLAV+  K +VE+A  N+  N+V 
Sbjct: 139 CGSGILSI-LAKKLGASGVLAVDNDKMAVESAIENVEKNNVE 179


>gi|330874682|gb|EGH08831.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 398

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 82/288 (28%), Gaps = 57/288 (19%)

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHR 125
            I   +  SLL++ + + +     +  +P  R      D L      +    +V  +   
Sbjct: 73  DIKLALDKSLLVHRINVALSLRERLFDKPFYRLVFGDSDLLPGLVVDRFGDILVVQLASA 132

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDYVDERLTVAGRTL 178
            +++   +    L   +       +    A          +       V E + +    +
Sbjct: 133 TMENHKEDIIAALVQVIKPSGILFKNDSAARDAEGLNRYVETVFG--LVPEWVALEENGV 190

Query: 179 IYRQIENS------FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHF 231
            +     +      F         H +     A       +L+LY   G + +   A   
Sbjct: 191 KFEAPVTAGQKTGWFY-------DHRMNRARIAPYVKGKRVLDLYSYIGGWGIQAAAFGA 243

Query: 232 DRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             V  V+ +  +++    N A N     +  +                F  LK++     
Sbjct: 244 SDVTCVDASSFALDGVERNAALNGFAEKMTCIEGDV------------FEALKELKAGEE 291

Query: 291 RFKTIFVDPPRSG---------------LDDATVGMVQAYPHILYISC 323
           RF  I  DPP                  L++  + ++     ++  SC
Sbjct: 292 RFDVIVADPPAFIKRKKDMKNGEGAYRRLNEQAMRLLSKDGILISASC 339


>gi|330508737|ref|YP_004385165.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328929545|gb|AEB69347.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 250

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN 258
           +  A+      +L+L  G G  S + A       +V+ V++    +  AR N A    +N
Sbjct: 68  IALASIKEGETVLDLGSGAGFDSFLAANRVGPTGKVIGVDMTPEMINRARENAAIGGYSN 127

Query: 259 VKIVRMSSKEF 269
           V+ +    ++ 
Sbjct: 128 VQFLPGELEDL 138


>gi|295100326|emb|CBK97871.1| SAM-dependent methyltransferase [Faecalibacterium prausnitzii L2-6]
          Length = 409

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 14/124 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G+F+L  A     RV A +I+  ++  A+ N   N + 
Sbjct: 225 YNRRAVARLAAGHTVLDCFTHTGSFALNAASGGAARVTAADISADAIAMAQRNAERNGLT 284

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316
           N+  +   + E    + +E             + +  I +DPP       TV   ++ Y 
Sbjct: 285 NMDFLCEDTFELLPRLEKE------------GHPYDFIILDPPAFTKARRTVENAMRGYK 332

Query: 317 HILY 320
            I Y
Sbjct: 333 EINY 336


>gi|239999900|ref|ZP_04719824.1| HemK [Neisseria gonorrhoeae 35/02]
          Length = 273

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 84/232 (36%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEIRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPNVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISTPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  ER++               I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSERQW-------------DIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|146284322|ref|YP_001174475.1| hypothetical protein PST_4010 [Pseudomonas stutzeri A1501]
 gi|145572527|gb|ABP81633.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 398

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+L+   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARLAPYVKGKRVLDLFSYIGGWGVQAAAFGASEVFCVDASAFALDGVERNAALNGVAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  V   + E  + ++   E            RF  +  DPP                  
Sbjct: 272 MTCVEGDAFEAMKELKNAEE------------RFDVVITDPPAFIKRKKDLKNGEAAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNETAMRLLNKDGILVSASC 339


>gi|93006472|ref|YP_580909.1| ribosomal protein L11 methyltransferase [Psychrobacter
           cryohalolentis K5]
 gi|122415150|sp|Q1QA78|PRMA_PSYCK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|92394150|gb|ABE75425.1| LSU ribosomal protein L11P methyltransferase [Psychrobacter
           cryohalolentis K5]
          Length = 308

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W+          +++  CG+G   +  L      V AV+I   +V A   N A N V+
Sbjct: 152 LDWLTEQDL-TDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQAVLATNQNAARNSVD 210

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           N ++     ++FT   +++        +           +  P  GL    V ++     
Sbjct: 211 N-RLQAFLPEDFTAFWQQQNIAPVAVMVAN--------ILAKPLIGLAPYFVTLMAPKSR 261

Query: 318 IL 319
           I+
Sbjct: 262 IV 263


>gi|240013153|ref|ZP_04720066.1| HemK [Neisseria gonorrhoeae DGI18]
 gi|240081797|ref|ZP_04726340.1| HemK [Neisseria gonorrhoeae FA19]
 gi|240114077|ref|ZP_04728567.1| HemK [Neisseria gonorrhoeae MS11]
 gi|240116887|ref|ZP_04730949.1| HemK [Neisseria gonorrhoeae PID1]
 gi|240120224|ref|ZP_04733186.1| HemK [Neisseria gonorrhoeae PID24-1]
 gi|240122522|ref|ZP_04735478.1| HemK [Neisseria gonorrhoeae PID332]
 gi|240126630|ref|ZP_04739516.1| HemK [Neisseria gonorrhoeae SK-92-679]
 gi|240127232|ref|ZP_04739893.1| HemK [Neisseria gonorrhoeae SK-93-1035]
 gi|260441507|ref|ZP_05795323.1| HemK [Neisseria gonorrhoeae DGI2]
          Length = 273

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 84/232 (36%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEIRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPNVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISTPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  ER++               I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSERQW-------------DIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|223039310|ref|ZP_03609599.1| serine protease [Campylobacter rectus RM3267]
 gi|222879371|gb|EEF14463.1| serine protease [Campylobacter rectus RM3267]
          Length = 300

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           G +  +L++ CG G   + LA+    V  V+     +  AR N     + N+K ++
Sbjct: 59  GPEDSVLDVGCGPGRLIVPLAKIARSVTGVDAFAQMLSFARQNAQNAGLKNIKFLQ 114


>gi|167647055|ref|YP_001684718.1| hypothetical protein Caul_3093 [Caulobacter sp. K31]
 gi|167349485|gb|ABZ72220.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 304

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           +F  P    N    +  + A K  Q  +L L+   G  SLV A     V  V+ +K SV 
Sbjct: 105 AFF-PEQAANWAWQDQRVRAIKDRQPKVLNLFGYTGVASLVCAAAGAAVTHVDASKKSVG 163

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            AR N A   + + K +R   ++  + + RE     L         +  I +DPP+ G  
Sbjct: 164 YARENAAFAGLAD-KPIRWIVEDARRFVAREVRRGSL---------YDGIILDPPKFGRG 213

Query: 306 D 306
            
Sbjct: 214 A 214


>gi|149280236|ref|ZP_01886359.1| hypothetical protein PBAL39_19300 [Pedobacter sp. BAL39]
 gi|149229073|gb|EDM34469.1| hypothetical protein PBAL39_19300 [Pedobacter sp. BAL39]
          Length = 393

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 15/118 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +  +   ++G L++L  G G  S   A+    V   E+ +   E A +N A    +N+  
Sbjct: 81  IYKSRLALKGTLIDLTGGFGVDSFYFAKSCSSVTHCELNQELSEIAAHNAATLGQDNLTF 140

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                               +  +  ++  +  I++DP R G       +    P+++
Sbjct: 141 FAGD---------------GIAQLQNNTTHYDNIYIDPARRGTMGKVFMLKDCTPNVV 183


>gi|88797390|ref|ZP_01112980.1| 3-demethylubiquinone-9 3-methyltransferase [Reinekea sp. MED297]
 gi|88780259|gb|EAR11444.1| 3-demethylubiquinone-9 3-methyltransferase [Reinekea sp. MED297]
          Length = 247

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 17/95 (17%)

Query: 180 YRQIENSFTQPN------AGINVHMLEWVLAATKGIQG-----------DLLELYCGNGN 222
           YR++ +++ QP+        +N     W+    +                +L++ CG G 
Sbjct: 15  YRRLADTWWQPDGPFWPLHQLNQLRTRWIAEQWRKRHPMADSEQPLQGLHVLDVGCGGGI 74

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
            S  LAR   +V  V++   ++E AR +  A ++ 
Sbjct: 75  LSEALARLGAQVHGVDVVARNIEVARRHAKAQNLA 109


>gi|320169843|gb|EFW46742.1| methyltransferase [Capsaspora owczarzaki ATCC 30864]
          Length = 389

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRM 264
             Q  LL++ CG G+  ++ A+ F    +L VEIA   V  A+ +I  + +  NV++V+ 
Sbjct: 151 NSQDTLLDVGCGCGDQDVLFAKTFQPKSILGVEIAPSQVAQAQCHIQRHGLESNVQVVQG 210

Query: 265 SSKEFTQAMRREREFNRLKDID 286
           S+ +   + R  R+F+ +  +D
Sbjct: 211 SAVDLAASCRAARQFSVVLSLD 232


>gi|319762554|ref|YP_004126491.1| ubiquinone biosynthesis o-methyltransferase [Alicycliphilus
           denitrificans BC]
 gi|330824571|ref|YP_004387874.1| ubiquinone biosynthesis O-methyltransferase [Alicycliphilus
           denitrificans K601]
 gi|317117115|gb|ADU99603.1| ubiquinone biosynthesis O-methyltransferase [Alicycliphilus
           denitrificans BC]
 gi|329309943|gb|AEB84358.1| ubiquinone biosynthesis O-methyltransferase [Alicycliphilus
           denitrificans K601]
          Length = 237

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 15/164 (9%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   LEW+   +       L++ CG G  S  +AR    V  +++A  ++  AR + 
Sbjct: 33  HQINPLRLEWINQLSPLEGQKALDVGCGGGILSDSMARKGAEVTGIDLASKALRVARLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                  V+   +S +E  Q      +     ++  H    +++           A   +
Sbjct: 93  LEAQTPRVQYREISVEELAQESPGSFDTVTCMEMLEHVPDPQSVVT---------ACAHL 143

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355
           V+    + + + N ++    L+I+   + ++        P   H
Sbjct: 144 VKPGGWVFFSTINRNAKAFALAIVGAEYLLK------MLPQGTH 181


>gi|294887407|ref|XP_002772094.1| hypothetical protein Pmar_PMAR017324 [Perkinsus marinus ATCC 50983]
 gi|239876032|gb|EER03910.1| hypothetical protein Pmar_PMAR017324 [Perkinsus marinus ATCC 50983]
          Length = 51

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 345 ALFDQFPYTRHMECGVLLVRKP 366
              D FP+T H E  +LL R+P
Sbjct: 1   VPVDMFPHTYHCEAMLLLDREP 22


>gi|228908645|ref|ZP_04072482.1| Methyltransferase type 11 [Bacillus thuringiensis IBL 200]
 gi|228850986|gb|EEM95803.1| Methyltransferase type 11 [Bacillus thuringiensis IBL 200]
          Length = 205

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  ++++   A
Sbjct: 79  AKGFIKQNGHENVSFVAGNAEDLPFA 104


>gi|225462289|ref|XP_002265047.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 387

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 15/107 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK--IVRMSSKE 268
            +L++ C +G F+L  +      V  V+ + P++E A  NI  N+++  K   +R  + E
Sbjct: 213 RVLDMCCYSGGFALNAVCGGAVNVTGVDTSMPALELANENIILNNLDPGKISFLRRDATE 272

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           F            +KD    +  +  + +DPP+       +      
Sbjct: 273 F------------MKDAVARNESWDIVILDPPKLAPRRKVLQSASGM 307


>gi|171910033|ref|ZP_02925503.1| Methyltransferase type 12 [Verrucomicrobium spinosum DSM 4136]
          Length = 303

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           + + +  +   N  I   +       T      +LE+ CG G+ +   AR    V AV+I
Sbjct: 74  FDRTDGFYFGTNPYIREQV-----DFTSLAGKQVLEIGCGAGSAACAFARAGAHVTAVDI 128

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            + +V+  R N     + N++++RM +++         +F     +  HS   +  +   
Sbjct: 129 TEQAVKLTRRNAELKGITNLEVLRMDAEKLDGLADGRFDFVYSWGVLHHSSNPERCYQQV 188

Query: 300 PR 301
            R
Sbjct: 189 AR 190


>gi|297736111|emb|CBI24149.3| unnamed protein product [Vitis vinifera]
          Length = 387

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 44/107 (41%), Gaps = 15/107 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK--IVRMSSKE 268
            +L++ C +G F+L  +      V  V+ + P++E A  NI  N+++  K   +R  + E
Sbjct: 213 RVLDMCCYSGGFALNAVCGGAVNVTGVDTSMPALELANENIILNNLDPGKISFLRRDATE 272

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           F            +KD    +  +  + +DPP+       +      
Sbjct: 273 F------------MKDAVARNESWDIVILDPPKLAPRRKVLQSASGM 307


>gi|303244608|ref|ZP_07330941.1| protein of unknown function Met10 [Methanothermococcus okinawensis
           IH1]
 gi|302485034|gb|EFL47965.1| protein of unknown function Met10 [Methanothermococcus okinawensis
           IH1]
          Length = 345

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 21/120 (17%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +         +++++CG G FS+   ++  ++ A++I   ++E  + NI  N + N    
Sbjct: 198 IMEKVKFDDVVVDMFCGVGPFSIAC-KNAKKIYAIDINPNAIELLKKNIELNRLQN---- 252

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--LDDATVGMVQAYPHILY 320
                         +    LKD+ +   +   + ++ P+      D  + +V+    I Y
Sbjct: 253 --------------KITPILKDVRMVDVKGNRVIMNLPKYAHLFVDKALNIVEDNGIIHY 298


>gi|300939552|ref|ZP_07154209.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 21-1]
 gi|300455556|gb|EFK19049.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS 21-1]
          Length = 277

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDCMPDAVSLAQRNAQNLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|229496584|ref|ZP_04390298.1| SmtA protein [Porphyromonas endodontalis ATCC 35406]
 gi|229316481|gb|EEN82400.1| SmtA protein [Porphyromonas endodontalis ATCC 35406]
          Length = 256

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 59/171 (34%), Gaps = 40/171 (23%)

Query: 200 EWV-LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV 256
            W  +   +     +L++ CG G  +L+LA+ +    V A+EI   +VE A YN A    
Sbjct: 42  AWASIDTREETPLRILDVGCGTGLIALMLAQRYPRAEVTALEIEPTAVERATYNAA--QS 99

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--------RSGLDDAT 308
                VR+   +F+                     +  I  +PP        RS +    
Sbjct: 100 PFSSRVRVVQADFST-------------WQAPQALYDLIVSNPPYYKNTLQARSEVRHTA 146

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD------QFPYT 353
             +    P  +        L R  ++LS    +  +  +D       F +T
Sbjct: 147 RAIGFLSPKEV--------LRRASALLSPQGVVALVTPYDQLEELRMFAFT 189


>gi|150389315|ref|YP_001319364.1| cyclopropane-fatty-acyl-phospholipid synthase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949177|gb|ABR47705.1| Cyclopropane-fatty-acyl-phospholipid synthase [Alkaliphilus
           metalliredigens QYMF]
          Length = 276

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 57/121 (47%), Gaps = 9/121 (7%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH------MLEWVLA-ATKG 208
           +  KI   +D  +++     ++ ++     +F   N  +++       +++ +L      
Sbjct: 3   DVEKIVYWKDAWEKKKMDTKKSEVFWDNRAAFF--NTKVSLEKNESSDIIDLLLKKEMLH 60

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  +L++ CG G  ++ +AR   ++ A++I++  +   + N    +++N+K ++   K+
Sbjct: 61  EEMSVLDIGCGPGKHTIPMARIVKKITALDISENMLNHLQNNAKKMNLDNIKTLKKDWKD 120

Query: 269 F 269
            
Sbjct: 121 I 121


>gi|295090781|emb|CBK76888.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium cf. saccharolyticum K10]
          Length = 338

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E VL        D+L++  G+G   L LA    +  V A ++++ ++  A  N  
Sbjct: 119 TETLVEEVLRDCPDRNADILDMCTGSGCIGLSLAVLGRYRSVTAADVSEDALRVAAGNAK 178

Query: 253 ANHVNNVKIVRMSSKEF 269
              +    +VR  SK F
Sbjct: 179 RLFLIQKDVVRAESKNF 195


>gi|224097291|ref|XP_002190665.1| PREDICTED: similar to tRNA methyltransferase 12 homolog
           [Taeniopygia guttata]
          Length = 408

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 10/179 (5%)

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
            LE  L     +   L   S++      + RL  + W   A  L     AR+ ++   G 
Sbjct: 93  ELERDLPHAWQRHGDLLLLSEECFSGPAWERLGPELWETVASALGARRVARRGRVMPDGM 152

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
              +   L   +        G    +   +  F+  N      + E +  A+    G+++
Sbjct: 153 RTPSVTLLLGQHGWVEHVDNGIRYTFDVTKCMFSPGN------ITEKLRVASLPCSGEVV 206

Query: 215 -ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
            +LY G G F+L    H     V A E    +VEA   ++  N V    +I R  S++ 
Sbjct: 207 VDLYAGIGYFTLPFLVHAGAAFVHACEWNSHAVEALHRSLVLNGVRERCRIHRGDSRQL 265


>gi|116751314|ref|YP_848001.1| 50S ribosomal protein L11 methyltransferase [Syntrophobacter
           fumaroxidans MPOB]
 gi|166223498|sp|A0LQ64|PRMA_SYNFM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|116700378|gb|ABK19566.1| LSU ribosomal protein L11P methyltransferase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 290

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN 258
           +  L A     G LL++  G+G  ++  A      V AV+    +VE A  NIA N + +
Sbjct: 145 DRALQALPSAPGSLLDVGTGSGILAVAAALLGFHPVQAVDDDPEAVEVAAENIALNGMES 204

Query: 259 V-KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
             +++  ++++ + A   +     ++ I +     + + +  P +GL  A  G++     
Sbjct: 205 AIELLAGTARQASGAF--DVVIANIQAIPLVGMASELVRLTAP-AGL-AALSGILVEQGE 260

Query: 318 ILYISCNPDSLCRDLSIL 335
           ++       S  RDL +L
Sbjct: 261 VV------KSAYRDLGLL 272


>gi|332532478|ref|ZP_08408356.1| methylase of polypeptide chain release factors [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038121|gb|EGI74568.1| methylase of polypeptide chain release factors [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 279

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 62/203 (30%), Gaps = 32/203 (15%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR-KYQIQLIGRANKTKI 160
             L           Q ++  I  +     +      L D   ++    IQ   +      
Sbjct: 14  DLLASSSESAKLDAQVLLLHILQKPRSYLFTWPEHALSDEQQSQFNVFIQRRLKGEPVAH 73

Query: 161 CLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
               R++    L V   TLI R                ++E  L         +L+L  G
Sbjct: 74  ITGLREFWSLSLEVNATTLIPRPD-----------TETLVEQALEIALPATAKVLDLGTG 122

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L L       ++ AV+    +V  A  N     +NNV +            ++  
Sbjct: 123 TGAIALALGSEMPSWQITAVDRVSDAVALATRNQQRLAINNVHV------------KQSN 170

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
            F+ L     H  +F  I  +PP
Sbjct: 171 WFSEL-----HGEKFNLIVTNPP 188


>gi|255530544|ref|YP_003090916.1| hypothetical protein Phep_0632 [Pedobacter heparinus DSM 2366]
 gi|255343528|gb|ACU02854.1| conserved hypothetical protein [Pedobacter heparinus DSM 2366]
          Length = 404

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 95/279 (34%), Gaps = 39/279 (13%)

Query: 1   MSGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYH 60
           MS  + + Q++ QL+E       + +   + N Q    E     ++  +    +      
Sbjct: 1   MSNQVYLQQFKDQLSE--SITAGVFVKISMGNYQGNEKE-----LKNIYVRLVEIKRTAM 53

Query: 61  IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           + F  + K R  I  F                 I L     +  F+I  L +   + I+ 
Sbjct: 54  LSFTYRYKTRDIIKNFPIT------------EGITLMGNFISNDFRIATLFTTEKEVIL- 100

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--DRDYVDERLTVAGRTL 178
                   +  ++  I LR+       Q  L     K +I +   + Y+ E         
Sbjct: 101 --------EHGKKQLIALREKKVKTAVQPTLAHNKEKKRIIVPAGKTYLQELRISDADGN 152

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL--- 235
           +++  ++ + Q N  I   +L  ++    G   +++++  G G  +  L  +   VL   
Sbjct: 153 VFKNAQDKYRQINQYI--EILSSLMRELPGEVNNVVDMGSGKGYLTFALYDYLHHVLNQN 210

Query: 236 ----AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
                +E  +  V        ++  + +  V+ +  ++ 
Sbjct: 211 AKITGLEYREDLVALCNRIAESSGFDKLDFVQGTIADYA 249


>gi|163858288|ref|YP_001632586.1| putative N6-adenine-specific methyltransferase [Bordetella petrii
           DSM 12804]
 gi|163262016|emb|CAP44318.1| putative N6-adenine-specific methyltransferase [Bordetella petrii]
          Length = 220

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 17/110 (15%)

Query: 194 INVHMLEWVLAATKG--IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
           +   +  W+     G      +L+L+ G+G       +R   +VL VE  + +V A R  
Sbjct: 65  VRETLYNWLTHLWDGEFAGKRVLDLFAGSGALGFEAASRGATQVLLVEHDRTAVAALR-- 122

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A     N   VR+ + E  Q ++R           + + RF  I +DPP
Sbjct: 123 -ALRDKLNAAAVRVHAGEAMQVVQR-----------MDASRFDLILLDPP 160


>gi|254286549|ref|ZP_04961505.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|150423307|gb|EDN15252.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
          Length = 418

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH       ++   N  KI +D       +    +T  Y    +S  Q          
Sbjct: 192 GVLHGELPSKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ---------- 234

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               +     + ++L  +   G F L  L     RV+  ++++P+++ A++N   N    
Sbjct: 235 ----SMKYVKEKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--- 287

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F  L++      RF  + +DPP+     A + 
Sbjct: 288 -----FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 334


>gi|254709300|ref|ZP_05171111.1| putative SAM dependent methyltransferase [Brucella pinnipedialis
           B2/94]
 gi|256030823|ref|ZP_05444437.1| putative SAM dependent methyltransferase [Brucella pinnipedialis
           M292/94/1]
 gi|261316809|ref|ZP_05956006.1| SAM dependent methyltransferase [Brucella pinnipedialis B2/94]
 gi|261296032|gb|EEX99528.1| SAM dependent methyltransferase [Brucella pinnipedialis B2/94]
          Length = 433

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 27/186 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 159 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRERE 278
           G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R   
Sbjct: 217 GVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREERRGS 276

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILS 336
           F            +  I +DPP  G         + +  P ++  +C      + L+++ 
Sbjct: 277 F------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAVIL 323

Query: 337 TTHTIE 342
           T ++I 
Sbjct: 324 TAYSIR 329


>gi|296108760|ref|YP_003615709.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
 gi|295433574|gb|ADG12745.1| protein of unknown function Met10 [Methanocaldococcus infernus ME]
          Length = 244

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 166 YVDERLTVAGRT---LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
           Y +E  T+             +  ++Q N      M     A     +  +++++ G G 
Sbjct: 52  YGEETETIHKEHGCLFKLDVSKIMWSQGNIKERERM-----AFISNKRETVIDMFAGIGY 106

Query: 223 FSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           F++ +A+H    + A+E    + +    NI  N + NV  +   ++E 
Sbjct: 107 FTIPMAKHSKPFIYAIEKNPVAYKYLCENIKLNKLKNVAPILSDNREV 154


>gi|220911261|ref|YP_002486570.1| modification methylase, HemK family [Arthrobacter chlorophenolicus
           A6]
 gi|219858139|gb|ACL38481.1| modification methylase, HemK family [Arthrobacter chlorophenolicus
           A6]
          Length = 281

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             G +++L CG+G     LAR F    + AV+I   +VE AR N+ A       +     
Sbjct: 113 FDGVVVDLCCGSGAVGAALARRFPRAELHAVDIDSVAVECARSNVEAVG---GHVHTGDL 169

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            +      R R    +  ++      + I   PP + + +  + +
Sbjct: 170 FDALPCSLRSRVH--ILAVNAPYVPTEAIKTMPPEARVHEPLLSL 212


>gi|326575307|gb|EGE25235.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           CO72]
          Length = 310

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W LAA +     +++  CG+G   +  L     +VLAV+I   +V A R N A N V+
Sbjct: 153 LDW-LAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVD 211

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +              +  E + +R ++  +       I    P  G       +++    
Sbjct: 212 DR---------LLAFLPAEFDAHRTQNPQLADVITANILA-KPLIGFAPLFHDLLKTGGL 261

Query: 318 IL 319
           I+
Sbjct: 262 IV 263


>gi|326202287|ref|ZP_08192156.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium papyrosolvens DSM 2782]
 gi|325987405|gb|EGD48232.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium papyrosolvens DSM 2782]
          Length = 284

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 22/112 (19%)

Query: 195 NVHMLEWVLAATKGIQG---DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
              ++E V+   K        +L++  G+G  ++ +A       ++A +I++ +++ A+ 
Sbjct: 97  TEVLVEKVIELAKKSSNAGLKVLDMCTGSGCIAVSIAHFCPESSIVACDISEEAIKVAKA 156

Query: 250 NIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N   N V N V+       E  +                 SY+F  I  +PP
Sbjct: 157 NSDLNGVQNRVEFFCGDLFEALKG----------------SYKFDFIVSNPP 192


>gi|310659572|ref|YP_003937293.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           sticklandii DSM 519]
 gi|308826350|emb|CBH22388.1| putative Cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           sticklandii]
          Length = 276

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +L++  G GN+++  A+    V A++I++  V+  + N     + N+   + S +E 
Sbjct: 61  DSKVLDIGAGPGNYAIPFAKLVSEVTALDISEEMVKYLKENAQKEGLKNISAFQSSWEEL 120

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                R   F +  D+              P     ++ + M+ A     Y+S
Sbjct: 121 DTDTDR---FTKQYDL--------VFASMTPAVSSYESLIKMIDASRSYCYLS 162


>gi|320008319|gb|ADW03169.1| methyltransferase [Streptomyces flavogriseus ATCC 33331]
          Length = 194

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            + +LY G+G   L  L+R     L VE    +    R NI    +   +     +++  
Sbjct: 48  RVADLYAGSGAVGLEALSRGAVHALLVEADARAARTVRDNIRTLGLPGAEFRAGKAEQIV 107

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                             S  +  +F+DPP +  DD    ++
Sbjct: 108 TG-------------PAPSDPYDVLFLDPPYAVTDDDLREIL 136


>gi|256851208|ref|ZP_05556597.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           27-2-CHN]
 gi|260660632|ref|ZP_05861547.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           115-3-CHN]
 gi|256616270|gb|EEU21458.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           27-2-CHN]
 gi|260548354|gb|EEX24329.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           115-3-CHN]
          Length = 314

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              ++   L  +      +L++  G+G  ++  ++   + VLA +I+  +V AA  NIA 
Sbjct: 162 TTQLVMMALERSMTKPAKVLDVGTGSGILAIAASKLGAESVLATDISDEAVTAANENIAL 221

Query: 254 NHVNNVKIVRMS 265
           N +NN+K+++ +
Sbjct: 222 NKLNNIKVIKAN 233


>gi|289582957|ref|YP_003481423.1| methyltransferase type 11 [Natrialba magadii ATCC 43099]
 gi|289532510|gb|ADD06861.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099]
          Length = 209

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+L  G G  +L LA   +RV+  +I++  +E A    A   + NV+  R + +E
Sbjct: 46  VLDLGTGTGAIALALAPDAERVVGRDISEGMMEEAASKAADQGIENVEFDRGTFRE 101


>gi|326567542|gb|EGE17657.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis BC1]
          Length = 310

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 12/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W LAA +     +++  CG+G   +  L     +VLAV+I   +V A R N A N V+
Sbjct: 153 LDW-LAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVD 211

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +              +  E + +R ++  +       I    P  G       +++    
Sbjct: 212 DR---------LLAFLPAEFDAHRTQNPQLADVITANILA-KPLIGFAPLFHDLLKTGGL 261

Query: 318 IL 319
           I+
Sbjct: 262 IV 263


>gi|297206074|ref|ZP_06923469.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           JV-V16]
 gi|297149200|gb|EFH29498.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           JV-V16]
          Length = 314

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              ++   L  +      +L++  G+G  ++  ++   + VLA +I+  +V AA  NIA 
Sbjct: 162 TTQLVMMALERSMTKPAKVLDVGTGSGILAIAASKLGAESVLATDISDEAVTAANENIAL 221

Query: 254 NHVNNVKIVRMS 265
           N +NN+K+++ +
Sbjct: 222 NKLNNIKVIKAN 233


>gi|310689961|pdb|3OU2|A Chain A, Dhpi-Sah Complex Structure
 gi|310689963|pdb|3OU6|A Chain A, Dhpi-Sam Complex
 gi|310689964|pdb|3OU6|B Chain B, Dhpi-Sam Complex
 gi|310689965|pdb|3OU6|C Chain C, Dhpi-Sam Complex
 gi|310689966|pdb|3OU6|D Chain D, Dhpi-Sam Complex
 gi|310689967|pdb|3OU7|A Chain A, Dhpi-Sam-Hep Complex
 gi|310689968|pdb|3OU7|B Chain B, Dhpi-Sam-Hep Complex
 gi|310689969|pdb|3OU7|C Chain C, Dhpi-Sam-Hep Complex
 gi|310689970|pdb|3OU7|D Chain D, Dhpi-Sam-Hep Complex
 gi|268628098|gb|ACZ13460.1| SAM-dependent methyltransferase [Streptomyces luridus]
          Length = 218

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                 LE + A    I+GD+LEL  G G ++  L+   DRV A++ +   +  A     
Sbjct: 32  SAAPAALERLRA--GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR--- 86

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            + ++NV+  +    ++T   + +  F       +   RF+  +
Sbjct: 87  -HGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFW 129


>gi|291514663|emb|CBK63873.1| SAM-dependent methyltransferase [Alistipes shahii WAL 8301]
          Length = 399

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 15/118 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L         +L  +C  G FS+  L+     V +V+ ++ +V  A  N+  N  +N   
Sbjct: 220 LVKRYAKGRTVLNTFCYTGGFSVYALSGGAGEVCSVDSSERAVALATENMQLNFGDNAAH 279

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
             +++             + LKDI     ++  I +DPP        +G  +Q Y  +
Sbjct: 280 SEVAADAV----------DYLKDI---GDKYDLIILDPPAFAKHHKVLGNAMQGYKRL 324


>gi|283798431|ref|ZP_06347584.1| protein-(glutamine-N5) methyltransferase [Clostridium sp. M62/1]
 gi|291073836|gb|EFE11200.1| protein-(glutamine-N5) methyltransferase [Clostridium sp. M62/1]
          Length = 338

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E VL        D+L++  G+G   L LA    +  V A ++++ ++  A  N  
Sbjct: 119 TETLVEEVLRDCPDRNADILDMCTGSGCIGLSLAVLGRYRSVTAADVSEDALRVAAGNAK 178

Query: 253 ANHVNNVKIVRMSSKEF 269
              +    +VR  SK F
Sbjct: 179 RLFLIQKDVVRAESKNF 195


>gi|289209527|ref|YP_003461593.1| methyltransferase small [Thioalkalivibrio sp. K90mix]
 gi|288945158|gb|ADC72857.1| methyltransferase small [Thioalkalivibrio sp. K90mix]
          Length = 205

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLA--VEIAKPSVEAARYNIAANHVNNVKIVR 263
              D L+L CG G   L LAR   + +   V+    +VE +R N   N + NV+ V 
Sbjct: 62  PSDDCLDLGCGYGPIGLTLARKAPQGITTLVDTNFLAVEYSRRNAELNGITNVECVT 118


>gi|298252245|ref|ZP_06976048.1| methyltransferase small [Ktedonobacter racemifer DSM 44963]
 gi|297546837|gb|EFH80705.1| methyltransferase small [Ktedonobacter racemifer DSM 44963]
          Length = 400

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 13/115 (11%)

Query: 207 KGIQGDLLELYCGNGNFSL--VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
               G +L  +  +G FS+   L+    + ++V+++ P++EAAR + A N ++  K    
Sbjct: 221 YARGGRVLNGFSYSGGFSVYAALSSEETQTVSVDVSAPAIEAARQHFALNGLDASK---- 276

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
                      E  F  L+       RF  + +DPP    +       ++AY  +
Sbjct: 277 ------HEFHTEDVFEYLEQAAERGVRFDVVVLDPPAFAKNQGARTQALKAYRRL 325


>gi|150400941|ref|YP_001324707.1| methyltransferase type 11 [Methanococcus aeolicus Nankai-3]
 gi|150013644|gb|ABR56095.1| Methyltransferase type 11 [Methanococcus aeolicus Nankai-3]
          Length = 210

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N+  +   +   L    G +  +L++ CG G  SL+LA     V+ V++++  +  A+ 
Sbjct: 26  INSEKDKRAVRSALQEILGDRKKVLDVGCGTGFLSLILAELGHDVIGVDLSEGMLSKAKK 85

Query: 250 NIAANHVNNVKIVRMSSKEF 269
               N  + +      ++  
Sbjct: 86  KAEENGYD-ILFKLGDAENL 104


>gi|126664538|ref|ZP_01735522.1| predicted methyltransferase [Marinobacter sp. ELB17]
 gi|126630864|gb|EBA01478.1| predicted methyltransferase [Marinobacter sp. ELB17]
          Length = 217

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 30/187 (16%)

Query: 137 RLRDALHARKYQIQLIGRANKTK---ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
           RL    HA   Q       ++ +     +  D+   +LT      + R          A 
Sbjct: 9   RLLPKQHAADGQRPKSASGHRAQGELRIIGGDWRSRKLTFPDSGGV-RPTP-------AR 60

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
               +  W+     G     L+L+ G+G   L  L+R     + V+     V+A   N+A
Sbjct: 61  TRETLFNWLRFHLAG--ARCLDLFAGSGALGLEALSRGAAHSVFVDHTPELVKALNSNLA 118

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
               +N ++VR  +  F  +                   F  +F+DPP R G     +  
Sbjct: 119 LLRADNARVVRQDTDAFLAS---------------PGESFDIVFIDPPFRQGWLTRLLPA 163

Query: 312 VQAYPHI 318
           +     +
Sbjct: 164 LADNGWV 170


>gi|124026944|ref|YP_001012264.1| rRNA methylase family protein [Hyperthermus butylicus DSM 5456]
 gi|123977638|gb|ABM79919.1| predicted rRNA methylase family protein [Hyperthermus butylicus DSM
           5456]
          Length = 184

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 196 VHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             ++++V+   +  +GD+  +L CG+G  ++  AR   + + VE+ K  +EAA  N    
Sbjct: 28  RQLIDYVMRIARVGEGDIFYDLGCGDGRVAIEAARRGAKAVCVELRKDLIEAAMENARKA 87

Query: 255 HV-NNVKIVRMS 265
            V + VK V   
Sbjct: 88  GVYDRVKFVNDD 99


>gi|82703402|ref|YP_412968.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411467|gb|ABB75576.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nitrosospira multiformis ATCC 25196]
          Length = 225

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+            +LE+  G+G  + +LA+    V +VEI       A  N+
Sbjct: 65  PKVEARILQ---ELRINNTDRILEVGSGSGYLTALLAKKGKFVHSVEIVPELAAMAEKNL 121

Query: 252 AANHVNNVKIVRMSSK 267
             + + NV I    + 
Sbjct: 122 RNHQIANVLIENGDAA 137


>gi|15835299|ref|NP_297058.1| hypothetical protein TC0684 [Chlamydia muridarum Nigg]
 gi|270285472|ref|ZP_06194866.1| N6-adenine-specific DNA methylase [Chlamydia muridarum Nigg]
 gi|270289483|ref|ZP_06195785.1| N6-adenine-specific DNA methylase [Chlamydia muridarum Weiss]
 gi|301336869|ref|ZP_07225071.1| N6-adenine-specific DNA methylase [Chlamydia muridarum MopnTet14]
 gi|7190716|gb|AAF39501.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
          Length = 275

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L L+   G  S+  A+    V  V+ +K +V+ A+ N+  N  +  +I          
Sbjct: 108 KVLNLFAYTGASSIFCAQQGAAVYHVDASKAAVKWAQKNVEGNSFSEKRIF--------- 158

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
               E  F+ LK        +  I +DPP  G   
Sbjct: 159 -WIIEDVFSFLKKEIRRGKTYDVILLDPPTYGRGP 192


>gi|312865012|ref|ZP_07725240.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus downei F0415]
 gi|311099123|gb|EFQ57339.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus downei F0415]
          Length = 276

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 65/163 (39%), Gaps = 24/163 (14%)

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
           F    L        V L+  + + +  +    R+   L A +    ++G           
Sbjct: 26  FTFRNLKGLDMTGFVLLLR-QEVSEEDQALLARIAQRLLAHEPAQYILGYET-------- 76

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
            + D +L V  R LI R                +++ +LA     Q DLL++  G+G  +
Sbjct: 77  -FHDLKLKVDKRILIPRPE-----------TAELVDLILAENADEQLDLLDIGTGSGAIA 124

Query: 225 LVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           L LA  R   R++A +I++ +++ A+ N  AN +  V   +  
Sbjct: 125 LALAHERPTWRIVASDISQEALDLAKENAQANQIA-VDFCQSD 166


>gi|189485188|ref|YP_001956129.1| methylase of polypeptide chain release factors [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287147|dbj|BAG13668.1| methylase of polypeptide chain release factors [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 288

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNI 251
              ++E  L  A K  +  +L+L  G+G  ++ LA+   F  ++A +++  ++E AR N 
Sbjct: 101 TEILVETALKIAKKENKNSVLDLCTGSGCIAVSLAKLGKFKDIMASDVSGSALEIARENA 160

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +N+V ++  V+ +                     I    F  I  +PP
Sbjct: 161 RSNNVLDINFVKSNVFS-----------------GISGKNFDIIISNPP 192


>gi|170290212|ref|YP_001737028.1| methyltransferase type 11 [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174292|gb|ACB07345.1| Methyltransferase type 11 [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 262

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E +    KG    +L++ CG G  S+   R    V+ +++++  +  AR       + NV
Sbjct: 26  EVIKKFYKGRARRVLDVGCGTGMHSIEFGRRGYEVVGIDVSEDMINRAREKAK--GMENV 83

Query: 260 KIVRMSS 266
           K +   +
Sbjct: 84  KFLVGDA 90


>gi|332685759|ref|YP_004455533.1| ribosomal RNA small subunit methyltransferase C [Melissococcus
           plutonius ATCC 35311]
 gi|332369768|dbj|BAK20724.1| ribosomal RNA small subunit methyltransferase C [Melissococcus
           plutonius ATCC 35311]
          Length = 200

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +GD+L++ CG G   L LA    R V  V++ + ++  A+ N   NH+ NV I
Sbjct: 59  PEGDMLDVGCGYGPIGLTLASVTGRFVEMVDVNQRAIGLAKENAKRNHIKNVDI 112


>gi|288918436|ref|ZP_06412788.1| Methyltransferase type 11 [Frankia sp. EUN1f]
 gi|288350199|gb|EFC84424.1| Methyltransferase type 11 [Frankia sp. EUN1f]
          Length = 289

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 14/111 (12%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +       V        G +L++ CG G  ++ LA     V A+E++  ++  A 
Sbjct: 105 QPNGAL-------VAEVRGLTPGRVLDVGCGEGADAVWLANRGWDVTALEVSGVALRRAA 157

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            +     V  V+ V     E  QA      F      D+ S ++  +   P
Sbjct: 158 EHARDAGVT-VRWVHAELSEAAQAAVPPASF------DLVSAQYPALLRTP 201


>gi|297191820|ref|ZP_06909218.1| DNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151085|gb|EDY65919.2| DNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 194

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            + +LY G+G   L  L+R     L VE    +    R N+ A  +   ++    +++  
Sbjct: 48  RVADLYAGSGAVGLEALSRGASHALLVEADARAARVVRENVRALGLPGAEVRTGKAEQIV 107

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                                +  +F+DPP +  DD    ++
Sbjct: 108 TG-------------PAPESPYDVVFLDPPYAVTDDDLREIL 136


>gi|325675919|ref|ZP_08155602.1| site-specific DNA-methyltransferase (adenine-specific) [Rhodococcus
           equi ATCC 33707]
 gi|325553157|gb|EGD22836.1| site-specific DNA-methyltransferase (adenine-specific) [Rhodococcus
           equi ATCC 33707]
          Length = 175

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 15/104 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+LY G+G   L  L+R    VL VE    +    + N+AA  ++   +VR ++   
Sbjct: 32  ATVLDLYAGSGALGLEALSRGAAHVLLVESDAKAAAVVKQNVAAVGLSGA-VVRTATVAA 90

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                 EREF               +  DPP +  ++A   ++ 
Sbjct: 91  VVGGAAEREF-------------DVVLADPPYAVTEEAVTSVLS 121


>gi|295115023|emb|CBL35870.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [butyrate-producing bacterium SM4/1]
          Length = 338

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E VL        D+L++  G+G   L LA    +  V A ++++ ++  A  N  
Sbjct: 119 TETLVEEVLRDCPDRNADILDMCTGSGCIGLSLAVLGRYRSVTAADVSEDALRVAAGNAK 178

Query: 253 ANHVNNVKIVRMSSKEF 269
              +    +VR  SK F
Sbjct: 179 RLFLIQKDVVRAESKNF 195


>gi|261206971|ref|ZP_05921660.1| methyltransferase [Enterococcus faecium TC 6]
 gi|260078599|gb|EEW66301.1| methyltransferase [Enterococcus faecium TC 6]
          Length = 201

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 18/120 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
             +++         +G +L++ CG G   L LA    R V  V+I + +V  A+ N   N
Sbjct: 47  RVLIDAFDWEELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVSLAQGNAKRN 106

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + +V I + +  E                  +H   +  I  +PP          ++  
Sbjct: 107 QIEHVDIHQSNIYE-----------------AVHEETYAAIVSNPPIRAGKKVVHKILTG 149


>gi|297559305|ref|YP_003678279.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296843753|gb|ADH65773.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 287

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARH 230
             R L  R     F          M++W    L A       +++L  G+G  ++ +A+ 
Sbjct: 75  YFRYLELRVGPGVF--VPRPETEIMVDWAIQTLRAMDVADPLVVDLGTGSGAIAISIAQE 132

Query: 231 F--DRVLAVEIAKPSVEAARYNI-AANHVNNVKIVRMSSKEFTQAMRREREF 279
               RV  VE+   ++  AR NI A+ H + V       +     +    + 
Sbjct: 133 VPRSRVHTVEVDPDALAWARRNIDASGHADRVTSHHGDMRTALPQLNGRVDL 184


>gi|332975325|gb|EGK12223.1| UbiE/COQ5 family methyltransferase [Desmospora sp. 8437]
          Length = 257

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 199 LEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           LEW+          LL  ++  G G+ + VL+R   RV+ ++I    +E A        +
Sbjct: 31  LEWIAEEIGPSSPPLLALDIATGAGHTAFVLSRVCRRVVGLDITPRMLEIAAEEADRRGL 90

Query: 257 NNVKIVRMSSKEF 269
           +N+      ++  
Sbjct: 91  DNITWFEGDAENL 103


>gi|240111995|ref|ZP_04726485.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria gonorrhoeae
           MS11]
          Length = 238

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  +  +AR     V  +++A+ S+E AR +
Sbjct: 34  HDINPLRLDYIDGHADLRGKRVLDVGCGGGILAESMARRGAAFVKGIDMAEQSLETARLH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A N+V +++   +  ++   A     +     ++  H      I 
Sbjct: 94  AALNNVADIEYECIRVEDLAGAEPHSFDVVTCMEMMEHVPDPAAIV 139


>gi|239943370|ref|ZP_04695307.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239989823|ref|ZP_04710487.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
 gi|291446838|ref|ZP_06586228.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291349785|gb|EFE76689.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 227

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   +         G  G  L+L CG+G  +L LA     V AV+++  ++E    
Sbjct: 33  PNAVLAEVVTALASEPGSGGGGRALDLGCGHGGDALWLASLGWDVTAVDVSATALERVAA 92

Query: 250 NIAANHV-NNVKIVRMS 265
              A  + + V  +R  
Sbjct: 93  GADAAGLTDRVHPIRHD 109


>gi|254520991|ref|ZP_05133046.1| oxidoreductase [Stenotrophomonas sp. SKA14]
 gi|219718582|gb|EED37107.1| oxidoreductase [Stenotrophomonas sp. SKA14]
          Length = 389

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 17/123 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA 253
                EW+    +G    +L+L C  G F++   AR    V+ ++I +  ++ A+ N   
Sbjct: 203 QRENREWLSQQVEGKS--VLDLCCNTGGFAVYAAARGASEVVGIDIDEDVIQIAKGNSRL 260

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMV 312
           N+V   K V+               F  L+D      ++  + +DP +   D D  +  +
Sbjct: 261 NNVR-PKFVQSD------------IFPWLRDAANRGEQYDVVILDPAKMTRDRDQVITAL 307

Query: 313 QAY 315
           + Y
Sbjct: 308 KKY 310


>gi|163789044|ref|ZP_02183488.1| hypothetical protein FBALC1_09562 [Flavobacteriales bacterium
           ALC-1]
 gi|159875708|gb|EDP69768.1| hypothetical protein FBALC1_09562 [Flavobacteriales bacterium
           ALC-1]
          Length = 409

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 14/106 (13%)

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKE 268
             +L+++   G FS+  LA     V +++I+K +++ AR N   N  + V K +   +  
Sbjct: 237 KTVLDVFSYAGGFSVHALANEAIEVTSLDISKQALDIARENGKLNDYSGVHKTISGDA-- 294

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                     F  +K +      +  + +DPP      + + + + 
Sbjct: 295 ----------FKEMKALIEKGKTYDVVVIDPPSFAKQQSDIDLAKK 330


>gi|296170757|ref|ZP_06852329.1| thiopurine S-methyltransferase family protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894572|gb|EFG74309.1| thiopurine S-methyltransferase family protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 225

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 200 EWVLAATKG--IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + V+A   G  + GD+L++ CG G+ ++ LAR+  RV  ++I+  ++  A+        +
Sbjct: 49  DSVVAWHGGGWVHGDVLDIGCGLGDNAIYLARNGFRVTGLDISATALVTAQRRAHEAGAD 108

Query: 258 NVKIVRMSSKE---FTQAMRREREFNRLKDIDIHSYR 291
            V      + +   FT A     +      +D    R
Sbjct: 109 -VTFAVADATKLEGFTDAFDTVIDSGMFHCLDDDGKR 144


>gi|302419009|ref|XP_003007335.1| tRNA wybutosine-synthesizing protein [Verticillium albo-atrum
           VaMs.102]
 gi|261352986|gb|EEY15414.1| tRNA wybutosine-synthesizing protein [Verticillium albo-atrum
           VaMs.102]
          Length = 285

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                 +++Y G G F+   AR   RVL  E+   SVEA R    AN   +V + R 
Sbjct: 84  AAAPWAVDMYAGIGYFTFSYARLGMRVLCWELNPWSVEALRRGAVANGWGDVHVARG 140


>gi|213967814|ref|ZP_03395961.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|301382451|ref|ZP_07230869.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061157|ref|ZP_07252698.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tomato
           K40]
 gi|302132050|ref|ZP_07258040.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927590|gb|EEB61138.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 398

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 82/284 (28%), Gaps = 49/284 (17%)

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHR 125
            I   +  SLL++ + + +     +  +P  R      D L      +    +V  +   
Sbjct: 73  DIKLPLDKSLLVHRINVALSLRERLFDKPFYRLVFGDSDLLPGLVVDRFGDILVVQLASA 132

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDYVDERLTVAGRTL 178
            +++   +    L   +       +    A          +       V E + +    +
Sbjct: 133 TMENHKEDIIAALVQVIKPSGILFKNDSAARDAEGLNRYVETVFG--LVPEWVALEENGV 190

Query: 179 IYR--QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVL 235
            +    +     Q       H +     A       +L+LY   G + +   A     V 
Sbjct: 191 KFEAPVMAG---QKTGWFYDHRMNRARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVT 247

Query: 236 AVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            V+ +  +++    N A N     +  +                F  LK++     RF  
Sbjct: 248 CVDASSFALDGVERNAALNGFAEKMTCIEGDV------------FEALKELKAGEERFDV 295

Query: 295 IFVDPPRSG---------------LDDATVGMVQAYPHILYISC 323
           I  DPP                  L++  + ++     ++  SC
Sbjct: 296 IVADPPAFIKRKKDMKNGEGAYRRLNEQAMRLLSKDGILISASC 339


>gi|111225167|ref|YP_715961.1| RNA methylase [Frankia alni ACN14a]
 gi|111152699|emb|CAJ64442.1| putative RNA methylase; putative putative SAM-dependent
           methyltransferase domain [Frankia alni ACN14a]
          Length = 190

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             + +LY G+G   L  L+R     L V+    +V A R N+ A  ++  +I++ S    
Sbjct: 51  ARVADLYAGSGAVGLEALSRGAAHALLVDHDPAAVRALRRNVTALGLSGAEIIQASVARV 110

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            Q              +     +  +F+DPP +  D     ++  
Sbjct: 111 VQ--------------NTSGDPYDVMFLDPPYAMSDVELGEVLAK 141


>gi|86604842|ref|YP_473605.1| Mg-protoporphyrin IX methyl transferase [Synechococcus sp.
           JA-3-3Ab]
 gi|86553384|gb|ABC98342.1| magnesium protoporphyrin O-methyltransferase [Synechococcus sp.
           JA-3-3Ab]
          Length = 221

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 199 LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN--IAANH 255
           +E VL       G  + +  CG G+ SL LA    +V A +I++  V  AR    +    
Sbjct: 43  VETVLQWLGDPSGLRICDAGCGVGSLSLPLAARGAQVFASDISEQMVNEARRRQQMELGS 102

Query: 256 VNNVKIVRMSSKEFT 270
            +N +   +  +E T
Sbjct: 103 TDNPQFQVLDLEELT 117


>gi|54023022|ref|YP_117264.1| putative methyltransferase [Nocardia farcinica IFM 10152]
 gi|54014530|dbj|BAD55900.1| putative methyltransferase [Nocardia farcinica IFM 10152]
          Length = 290

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 16/112 (14%)

Query: 195 NVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
              +  W LA  + +  D    +++L  G+G  +L +A  R   +V AVE+   ++  AR
Sbjct: 98  TELLFAWALAHLETLPHDHQPIVIDLCTGSGALALAIAHARPDAQVHAVELDPAALRWAR 157

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N      +    + + + + T       + + L D++    R   +  +PP
Sbjct: 158 RNADERIADGDTPITLHADDVT-------DPSLLTDLN---GRVDLVVANPP 199


>gi|14520424|ref|NP_125899.1| sterol biosynthesis methyltransferase related [Pyrococcus abyssi
           GE5]
 gi|5457639|emb|CAB49130.1| SAM-dependent methyltransferase, ubiE/COQ5 family [Pyrococcus
           abyssi GE5]
          Length = 227

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LE +L      +G +L+L CG G FS +L  +   V+ ++I++  +  A+        +N
Sbjct: 28  LEPLLMKYMKRRGKVLDLACGVGGFSFLLEDYGFEVVGLDISEEMISKAKMYAKE-KSSN 86

Query: 259 VKIVRMSSKEF 269
           V+ +   +K+ 
Sbjct: 87  VEFIIGDAKKL 97


>gi|330994335|ref|ZP_08318263.1| hypothetical protein SXCC_04228 [Gluconacetobacter sp. SXCC-1]
 gi|329758802|gb|EGG75318.1| hypothetical protein SXCC_04228 [Gluconacetobacter sp. SXCC-1]
          Length = 251

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L+L CG G+ +  LA H + V+  +I    ++A  +  A   +NNV  V+  ++E 
Sbjct: 43  RVLDLGCGGGHVTYRLAPHVEEVVPCDITASMLDAVAHEAARQDLNNVATVQAPAEEL 100


>gi|302387451|ref|YP_003823273.1| Methyltransferase type 11 [Clostridium saccharolyticum WM1]
 gi|302198079|gb|ADL05650.1| Methyltransferase type 11 [Clostridium saccharolyticum WM1]
          Length = 224

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           ++L       G  L++ CG G  S +L+++  +V+AV++A   +E AR N   N  +N++
Sbjct: 32  YLLQHVPAGVGTCLDIGCGKGELSALLSKNAKKVIAVDLADKMIEYARSN---NAADNIE 88

Query: 261 IVRMS 265
            +  +
Sbjct: 89  YICGN 93


>gi|171912052|ref|ZP_02927522.1| hypothetical protein VspiD_12770 [Verrucomicrobium spinosum DSM
           4136]
          Length = 389

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +L+ +   G F+   A      V+AV+I++ +V  A  N  +          
Sbjct: 209 ARYAKGRRVLDCFTNQGGFAQACAVAGASEVVAVDISESAVNMALQNARSAG-------- 260

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
                     R E  F+ LK  + +   +  I +DPP       ++   ++ Y  I
Sbjct: 261 -----VALGARTENVFDFLKTAEKNGNTYDLIILDPPSFTKTKQSLHDALRGYKEI 311


>gi|188591038|ref|YP_001795638.1| s-adenosyl-l-methionine-dependent methyltransferase [Cupriavidus
           taiwanensis LMG 19424]
 gi|170937932|emb|CAP62916.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 412

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++L  +C  G FSL  L      V +++ +  +++ A  N+  N  +  +   + +    
Sbjct: 238 EVLNCFCYTGGFSLAALRGGAKAVTSIDSSGEALKIAAGNVTLNGFDPGRAAWLDA---- 293

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
                   F  L++      +F  I +DPP+       +    +AY  I
Sbjct: 294 ------DVFKTLREFRAEGRQFDLIVLDPPKFAPSAQHIDRAARAYKEI 336


>gi|108797408|ref|YP_637605.1| methyltransferase type 11 [Mycobacterium sp. MCS]
 gi|119866492|ref|YP_936444.1| methyltransferase type 11 [Mycobacterium sp. KMS]
 gi|108767827|gb|ABG06549.1| Methyltransferase type 11 [Mycobacterium sp. MCS]
 gi|119692581|gb|ABL89654.1| Methyltransferase type 11 [Mycobacterium sp. KMS]
          Length = 278

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
                  +    +     G     L++ CG+G  SL  AR    V+AV+I++   E    
Sbjct: 26  VTPESMQYGAHALRQLHIGRGTRFLDVACGSGALSLPAARLGADVVAVDISQAMTERVAA 85

Query: 250 NIAANHVNNVKIVRMSSKEFTQA 272
              A  ++N+    M+ ++   A
Sbjct: 86  RARAQGLSNIWCRVMNGQDLDLA 108


>gi|326776331|ref|ZP_08235596.1| methyltransferase [Streptomyces cf. griseus XylebKG-1]
 gi|326656664|gb|EGE41510.1| methyltransferase [Streptomyces cf. griseus XylebKG-1]
          Length = 194

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 14/113 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           W           + +LY G+G   L  L+R     L VE    +V   R N+    +   
Sbjct: 37  WEALLGTLDGARVADLYAGSGAVGLEALSRGAVHALLVEADPKAVRTVRDNVRTLGLPGA 96

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           ++    +++                    +  +  +F+DPP +  DD    ++
Sbjct: 97  EVRSGKAEQIVTG-------------PAPADPYDILFLDPPYAVTDDDLREIL 136


>gi|218704734|ref|YP_002412253.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli UMN026]
 gi|293404755|ref|ZP_06648747.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli FVEC1412]
 gi|298380398|ref|ZP_06989997.1| HemK protein [Escherichia coli FVEC1302]
 gi|300896600|ref|ZP_07115119.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           198-1]
 gi|218431831|emb|CAR12716.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Escherichia coli UMN026]
 gi|291426963|gb|EFE99989.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli FVEC1412]
 gi|298277840|gb|EFI19354.1| HemK protein [Escherichia coli FVEC1302]
 gi|300359543|gb|EFJ75413.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           198-1]
          Length = 277

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAVSLAQRNAQNLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|28867642|ref|NP_790261.1| hypothetical protein PSPTO_0412 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28850877|gb|AAO53956.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|331014955|gb|EGH95011.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 398

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 82/284 (28%), Gaps = 49/284 (17%)

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHR 125
            I   +  SLL++ + + +     +  +P  R      D L      +    +V  +   
Sbjct: 73  DIKLPLDKSLLVHRINVALSLRERLFDKPFYRLVFGDSDLLPGLVVDRFGDILVVQLASA 132

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDYVDERLTVAGRTL 178
            +++   +    L   +       +    A          +       V E + +    +
Sbjct: 133 TMENHKEDIIAALVQVIKPSGILFKNDSAARDAEGLNRYVETVFG--LVPEWVALEENGV 190

Query: 179 IYR--QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVL 235
            +    +     Q       H +     A       +L+LY   G + +   A     V 
Sbjct: 191 KFEAPVMAG---QKTGWFYDHRMNRARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVT 247

Query: 236 AVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            V+ +  +++    N A N     +  +                F  LK++     RF  
Sbjct: 248 CVDASSFALDGVERNAALNGFAEKMTCIEGDV------------FEALKELKAGEERFDV 295

Query: 295 IFVDPPRSG---------------LDDATVGMVQAYPHILYISC 323
           I  DPP                  L++  + ++     ++  SC
Sbjct: 296 IVADPPAFIKRKKDMKNGEGAYRRLNEQAMRLLSKDGILISASC 339


>gi|329897170|ref|ZP_08271910.1| HemK family modification methylase [gamma proteobacterium IMCC3088]
 gi|328921325|gb|EGG28719.1| HemK family modification methylase [gamma proteobacterium IMCC3088]
          Length = 275

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 19/119 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              +++  L     ++ ++L+L  G+G  +L LA  R    + AV+ ++ +++ A  N  
Sbjct: 94  TELLVDVALGLALDVKAEVLDLGTGSGAIALALASQRPQWSICAVDRSEDALDVATANQE 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
              + N+                           +  Y+F  I  +PP    D A +  
Sbjct: 154 NLGIKNIDFYCSD-----------------WFASLPQYQFDLIVSNPPYVEPDSAYLQQ 195


>gi|326773646|ref|ZP_08232929.1| RNA methyltransferase, RsmD family [Actinomyces viscosus C505]
 gi|326636876|gb|EGE37779.1| RNA methyltransferase, RsmD family [Actinomyces viscosus C505]
          Length = 204

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 15/125 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIA 252
           +   +   +          +L+L  G+G   L  A      V  V+ ++ + +  R NI 
Sbjct: 46  VREALFARLDHYRVLDGARVLDLCAGSGALGLEAASRGACEVTLVDSSRGASQTCRRNIR 105

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           A  ++ V  V   +  F                         + +DPP    ++    ++
Sbjct: 106 ALGLSGVSAVTAKAAAFLA--------------GPAGAPADLVLIDPPYELSEEELTAIL 151

Query: 313 QAYPH 317
            A   
Sbjct: 152 TALVR 156


>gi|282860871|ref|ZP_06269937.1| hypothetical protein SACTEDRAFT_0482 [Streptomyces sp. ACTE]
 gi|282564607|gb|EFB70143.1| hypothetical protein SACTEDRAFT_0482 [Streptomyces sp. ACTE]
          Length = 414

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 41/115 (35%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A  G    + +L CG G  ++ LAR    VLAV+    + + AR N  A  + +   VR 
Sbjct: 113 ARLGGVRSVADLCCGIGGDAIALARAGISVLAVDRDPLTAQVARANAEALGLQDRIEVRC 172

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +          +  F            F      PP S   +A +   +A   I 
Sbjct: 173 ADVTEIDTTPYDAVFVDPARRGGRGRIFDPEAYSPPLSWATEAALKAPRAALKIA 227


>gi|260553000|ref|ZP_05825915.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter sp.
           RUH2624]
 gi|260405242|gb|EEW98739.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter sp.
           RUH2624]
          Length = 237

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERAGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|240103150|ref|YP_002959459.1| S-adenosyl-L-methionine-dependent methyltransferase [Thermococcus
           gammatolerans EJ3]
 gi|239910704|gb|ACS33595.1| S-adenosyl-L-methionine-dependent methyltransferase [Thermococcus
           gammatolerans EJ3]
          Length = 385

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 16/122 (13%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                        + ++ CG G   +  A   +R   ++I    +E AR N     V+N+
Sbjct: 76  YRAKRLANFGVKSIADVSCGIGIQLIFYAMKVERAYGIDIDPVKIEFARRNAEKYRVSNI 135

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           + +   S               L +  I     + +F DP R     + T+  +   P  
Sbjct: 136 EFINGDS---------------LSEETIRRIDAEVVFSDPARPPEAPERTLEGLLPSPLR 180

Query: 319 LY 320
           +Y
Sbjct: 181 VY 182


>gi|255326353|ref|ZP_05367437.1| methyltransferase small [Rothia mucilaginosa ATCC 25296]
 gi|255296570|gb|EET75903.1| methyltransferase small [Rothia mucilaginosa ATCC 25296]
          Length = 207

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 22/121 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +  A       +L++ CG G  +L LA      +V AV++   S+     N AA  + NV
Sbjct: 51  LQEAPDPQGERMLDIGCGWGPITLTLAMLAPDAQVHAVDVNSRSISLTERNAAALGLPNV 110

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
            +    S +                      RF TI+ +PP R G +     ++   P +
Sbjct: 111 TVGTPESVD-------------------PELRFDTIWSNPPIRVGKEVLHEILLTWLPRL 151

Query: 319 L 319
            
Sbjct: 152 A 152


>gi|291614646|ref|YP_003524803.1| methyltransferase type 11 [Sideroxydans lithotrophicus ES-1]
 gi|291584758|gb|ADE12416.1| Methyltransferase type 11 [Sideroxydans lithotrophicus ES-1]
          Length = 270

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E + A+       +L++ CG G  +L LA+   +V  ++ ++  +   R  I      N+
Sbjct: 33  EAIAASNLKPNSTVLDVACGPGTLALRLAQQAGQVHGIDFSEAMLAIFRNKIEQAGHRNI 92

Query: 260 KIVRMSSKEFTQA 272
            +    ++    A
Sbjct: 93  ALHCGDAQTLPYA 105


>gi|126433027|ref|YP_001068718.1| methyltransferase type 11 [Mycobacterium sp. JLS]
 gi|126232827|gb|ABN96227.1| Methyltransferase type 11 [Mycobacterium sp. JLS]
          Length = 278

 Score = 50.0 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
                  +    +     G     L++ CG+G  SL  AR    V+AV+I++   E    
Sbjct: 26  VTPESMQYGAHALRQLHIGRGTRFLDVACGSGALSLPAARLGADVVAVDISQAMTERVAA 85

Query: 250 NIAANHVNNVKIVRMSSKEFTQA 272
              A  ++N+    M+ ++   A
Sbjct: 86  RARAQGLSNIWCRVMNGQDLDLA 108


>gi|327280035|ref|XP_003224760.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Anolis
           carolinensis]
          Length = 446

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 30/271 (11%)

Query: 79  GSLLINALMIEM-MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137
            S  I +  +E+     + E +L+A L +   +T+   +  V  I H  L D        
Sbjct: 102 VSPKIISYNMELTYDHFKAEEILQAVLPEGQEVTTAFSR--VGHIAHLNLRDHQLPYKHL 159

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN------SFTQP- 190
           +   +  +   I        T     R++  E L      +  +  EN       F++  
Sbjct: 160 IGQVIIDKNNGITCAVNKINTIESAYRNFQMEVLAGDESNMTTKVKENYLSYEFDFSKVY 219

Query: 191 -NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            N  ++    E           D+L +++ G G F++  A+    V A ++   S +  +
Sbjct: 220 WNPRLST---EHARIVNLLKSDDVLFDVFAGVGPFAIPAAKKNCIVFANDLNPESYKWLQ 276

Query: 249 YNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-- 305
            N   N V+  V++  M  +EF +   +E    +L   +  S     I ++ P   +D  
Sbjct: 277 RNCKLNKVDTKVQVFNMDGREFMKGPMKEELIKQLSLKERKSSLH--IVMNLPAMAIDFL 334

Query: 306 DATVGMVQAYP-----HILYISC-----NPD 326
           D    ++   P      I++  C     NP 
Sbjct: 335 DVFQDLLDGEPSSTELPIVHCHCFSKHENPA 365


>gi|326488038|dbj|BAJ89858.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326531960|dbj|BAK01356.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 213

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 24/136 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARY 249
             I   ML     +   I G ++ +  CG G  ++  A    + V  ++I   S+E A+ 
Sbjct: 30  PHIASRMLYTAENSFDDIAGKVVADFGCGCGTLAIASALLDAEHVTGIDIDLQSLELAQE 89

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
           N     ++ + +++                  +K++++      T+ ++PP    R G D
Sbjct: 90  NATDLELD-IDLIQCD----------------IKNLNLKGLLVDTVVMNPPFGTKRKGAD 132

Query: 306 DATVGM-VQAYPHILY 320
              + M ++     +Y
Sbjct: 133 MEFLSMGLKVASQAVY 148


>gi|226329847|ref|ZP_03805365.1| hypothetical protein PROPEN_03759 [Proteus penneri ATCC 35198]
 gi|225200642|gb|EEG82996.1| hypothetical protein PROPEN_03759 [Proteus penneri ATCC 35198]
          Length = 282

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L +A  R    ++ V+    +V  A+ N     
Sbjct: 98  LVEQALEKLPTEPITILDLGTGTGAIALAMASERPDCHIIGVDFQAEAVALAQENATRLA 157

Query: 256 VNNVKI 261
           +NN + 
Sbjct: 158 LNNTEF 163


>gi|150400710|ref|YP_001324476.1| protein of unknown function Met10 [Methanococcus aeolicus Nankai-3]
 gi|150013413|gb|ABR55864.1| protein of unknown function Met10 [Methanococcus aeolicus Nankai-3]
          Length = 355

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +      +  +++++CG G FS+   ++  ++ A++I   +VE  + NI  N + +
Sbjct: 210 IMEKVKPEDIVVDMFCGVGPFSIAC-KNAKKIYAIDINPDAVELLKKNIKLNKLQH 264


>gi|126652964|ref|ZP_01725106.1| YabB [Bacillus sp. B14905]
 gi|126590294|gb|EAZ84416.1| YabB [Bacillus sp. B14905]
          Length = 249

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 16/112 (14%)

Query: 210 QGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
           +G +++L  GNG   L L AR   ++  VE+    ++ A  ++  N + N ++++    K
Sbjct: 47  KGSIVDLCSGNGVIPLFLSARTRAQITGVELQPRLLDMAERSVRYNQLENQIQMILGDVK 106

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           E  + +  E              ++  +  +PP     +A+   +  +  I 
Sbjct: 107 EIPKQLGIE--------------KYDVVTCNPPYFLAHEASDKNLSEHHAIA 144


>gi|150399288|ref|YP_001323055.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus
           vannielii SB]
 gi|166225723|sp|A6UPM1|CBIT_METVS RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|150011991|gb|ABR54443.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus vannielii SB]
          Length = 180

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 35/67 (52%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG+G  ++ +++    V AV+ +K +++    N+   +V N ++    +K+    
Sbjct: 36  ILDIGCGSGGMTVEISKRCKFVYAVDGSKDAIDTTLKNMDKFNVKNCEVYFGDAKDLISN 95

Query: 273 MRREREF 279
            +  + F
Sbjct: 96  FKVNKAF 102


>gi|119897139|ref|YP_932352.1| putative protein-L-isoaspartate O-methyltransferase [Azoarcus sp.
           BH72]
 gi|119669552|emb|CAL93465.1| putative protein-L-isoaspartate O-methyltransferase [Azoarcus sp.
           BH72]
          Length = 217

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               +LE+  G+G F+ +LA   + V  V+I    V  A  N+A N V NV +    + +
Sbjct: 77  RSDSVLEVGAGSGYFAALLAARVEWVRTVDIEPELVRFAHANLARNGVENVIVEEGDAAQ 136


>gi|118579897|ref|YP_901147.1| type 12 methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118502607|gb|ABK99089.1| Methyltransferase type 12 [Pelobacter propionicus DSM 2379]
          Length = 270

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   +L+  CG G  ++ LAR    V AV+ ++  ++  R +     + NV  +  
Sbjct: 52  MQPAPSWSVLDFGCGAGTLAIPLARRVASVTAVDFSRVMLDLLRQSCREEGITNVTPLHG 111

Query: 265 S 265
           S
Sbjct: 112 S 112


>gi|152966102|ref|YP_001361886.1| methyltransferase type 11 [Kineococcus radiotolerans SRS30216]
 gi|151360619|gb|ABS03622.1| Methyltransferase type 11 [Kineococcus radiotolerans SRS30216]
          Length = 260

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           ++  A       +L++ CG G F+L+LA     V+ V+ A+ SVE AR   A      V+
Sbjct: 31  YLALAGTLHARRVLDVGCGTGTFALLLADRGCDVIGVDPAEASVEVAR---AKPGAERVR 87

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            V   +   T    R +  +R  D+   +     + VDPP
Sbjct: 88  WVVGDA---TAVQARGQVHDR--DLVTMTANTAQLIVDPP 122


>gi|71274646|ref|ZP_00650934.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71899641|ref|ZP_00681795.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|170730913|ref|YP_001776346.1| hypothetical protein Xfasm12_1828 [Xylella fastidiosa M12]
 gi|71164378|gb|EAO14092.1| conserved hypothetical protein [Xylella fastidiosa Dixon]
 gi|71730593|gb|EAO32670.1| conserved hypothetical protein [Xylella fastidiosa Ann-1]
 gi|167965706|gb|ACA12716.1| conserved hypothetical protein [Xylella fastidiosa M12]
          Length = 389

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 27/156 (17%)

Query: 168 DERLTVAGRTLIYRQIE-----NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            E + +    + +           F            +W+     G    +L+L C  G 
Sbjct: 175 TESVVITEHGVKFLVDPMGAHKTGFF----ADQRENRQWLSQGVAGKT--VLDLCCNTGG 228

Query: 223 FSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           F++  A R    V+ V+I +  ++ A+ N   N                    +   F  
Sbjct: 229 FAVYAALRGAADVVGVDIDQDVIQIAKANAKLNS-------------VRPKFLQTDIFPY 275

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           L+D  +   ++  + +DP +   D     ++ A   
Sbjct: 276 LRDAAVRGDQYDVVILDPAKMTRDRD--QIINALKK 309


>gi|302384869|ref|YP_003820691.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium saccharolyticum WM1]
 gi|302195497|gb|ADL03068.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium saccharolyticum WM1]
          Length = 288

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 19/109 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNI- 251
              ++E VL   KG    +L+L  G+G  ++ LA+   FDRV A +I++ ++  A  N  
Sbjct: 104 TETLVELVLKDYKGKMPKILDLCTGSGCIAISLAKLGGFDRVTAADISEEALLVAERNAG 163

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                  + +V+    +  +A + +R F               I  +PP
Sbjct: 164 KHLGEGRITLVK---SDLFEAFKNQRTF-------------DVIVSNPP 196


>gi|284165676|ref|YP_003403955.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284015331|gb|ADB61282.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 226

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                 L  +   T      +L+L CG G  SL+LA     V  +++    +E AR    
Sbjct: 38  EQREAWLAVLRQWTGDPPRRVLDLGCGTGTISLLLAELGHDVSGIDLTPEMLERARSKAR 97

Query: 253 ANHVNNVKIVRMSSKEF 269
              ++ +      ++  
Sbjct: 98  EARLS-IGFGLGDAEAL 113


>gi|115753806|ref|XP_001193617.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115928551|ref|XP_001183726.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 638

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 2/112 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +         +L+L CG G  SL  A  +    V+ ++ ++ ++   +       + NV+
Sbjct: 445 IEERMKSGIRILDLGCGRGLASLAFAESYPNSTVVGLDFSEEAINYGKERAKEKGLTNVE 504

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            +R  +           ++    ++         + +   R    D    M+
Sbjct: 505 FIREDAACIPDDWNNTIDYIYTFNVIHDLAHADKVLLALNRILKPDGVFSMI 556


>gi|82699066|ref|YP_413640.1| SAM dependent methyltransferase [Brucella melitensis biovar Abortus
           2308]
 gi|237814621|ref|ZP_04593619.1| SAM dependent methyltransferase [Brucella abortus str. 2308 A]
 gi|254690455|ref|ZP_05153709.1| SAM dependent methyltransferase, putative [Brucella abortus bv. 6
           str. 870]
 gi|254696575|ref|ZP_05158403.1| SAM dependent methyltransferase, putative [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254731488|ref|ZP_05190066.1| SAM dependent methyltransferase, putative [Brucella abortus bv. 4
           str. 292]
 gi|256258711|ref|ZP_05464247.1| SAM dependent methyltransferase, putative [Brucella abortus bv. 9
           str. C68]
 gi|260546425|ref|ZP_05822165.1| SAM dependent methyltransferase [Brucella abortus NCTC 8038]
 gi|260756007|ref|ZP_05868355.1| SAM dependent methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260759231|ref|ZP_05871579.1| SAM dependent methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260760953|ref|ZP_05873296.1| SAM dependent methyltransferase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260885027|ref|ZP_05896641.1| SAM dependent methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|297247543|ref|ZP_06931261.1| SAM-dependent methyltransferase [Brucella abortus bv. 5 str. B3196]
 gi|82615167|emb|CAJ10106.1| SAM dependent methyltransferase, putative [Brucella melitensis
           biovar Abortus 2308]
 gi|237789458|gb|EEP63668.1| SAM dependent methyltransferase [Brucella abortus str. 2308 A]
 gi|260096532|gb|EEW80408.1| SAM dependent methyltransferase [Brucella abortus NCTC 8038]
 gi|260669549|gb|EEX56489.1| SAM dependent methyltransferase [Brucella abortus bv. 4 str. 292]
 gi|260671385|gb|EEX58206.1| SAM dependent methyltransferase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676115|gb|EEX62936.1| SAM dependent methyltransferase [Brucella abortus bv. 6 str. 870]
 gi|260874555|gb|EEX81624.1| SAM dependent methyltransferase [Brucella abortus bv. 9 str. C68]
 gi|297174712|gb|EFH34059.1| SAM-dependent methyltransferase [Brucella abortus bv. 5 str. B3196]
          Length = 381

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 23/184 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 159 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SLV AR    V  V+ +K ++  AR N     +++ K +R   ++  + +RRE    
Sbjct: 217 GVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSD-KPIRWICEDAMKFVRREER-- 273

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILSTT 338
                      +  I +DPP  G         + +  P ++  +C      + L+++ T 
Sbjct: 274 -------RGSFYDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAVILTA 325

Query: 339 HTIE 342
           ++I 
Sbjct: 326 YSIR 329


>gi|51893507|ref|YP_076198.1| arsenite S-adenosylmethyltransferase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857196|dbj|BAD41354.1| putative methyltransferase [Symbiobacterium thermophilum IAM 14863]
          Length = 278

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 13/125 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L+L  G G    + AR      RV+ V++    +  AR N       NV+      + 
Sbjct: 96  TVLDLGSGAGFDCFLAARQVGESGRVIGVDMTPEMLARARENARKGGFANVEFRLGEIEH 155

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTI-----FVDPPRSGLDDATVGMVQAYPHI----- 318
              A            I++   + +        + P         V +    P +     
Sbjct: 156 LPVADESVDVIISNCVINLSPEKEQVFREAFRVLRPGGRIAVADMVSLAPLPPEVREDLA 215

Query: 319 LYISC 323
           LY  C
Sbjct: 216 LYAGC 220


>gi|307595644|ref|YP_003901961.1| methyltransferase [Vulcanisaeta distributa DSM 14429]
 gi|307550845|gb|ADN50910.1| methyltransferase small [Vulcanisaeta distributa DSM 14429]
          Length = 198

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 24/114 (21%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             D+L++ CG G   +V A+     RV+ V+I K +V+ A  NI  N V+N ++      
Sbjct: 57  DWDILDMGCGYGVLGIVAAKLAPRGRVVMVDINKLAVKLAAINIKINRVSNAEV------ 110

Query: 268 EFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
                        RL D+   +   +F TI  +PP  +GLD     +++A  H+
Sbjct: 111 -------------RLSDLYNAVQGEKFNTIISNPPITAGLDLNRRLIIEAKNHL 151


>gi|262281429|ref|ZP_06059210.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257255|gb|EEY75992.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 237

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERVGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
              ++V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQDNVQNIEYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|149184033|ref|ZP_01862393.1| hypothetical protein BSG1_11471 [Bacillus sp. SG-1]
 gi|148848261|gb|EDL62551.1| hypothetical protein BSG1_11471 [Bacillus sp. SG-1]
          Length = 201

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             I G LL++ CG G   L +A+ F    V  V++   ++  A  N  AN ++N  I   
Sbjct: 56  NEITGPLLDVGCGYGPVGLSMAKAFPERTVHMVDVNVRAIGLAEENARANGISNASIYES 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           S  +                 ++    F  +  +PP          +++
Sbjct: 116 SCFK-----------------NVSEKNFSAVLTNPPIRAGKSVVHEILE 147


>gi|74316198|ref|YP_313938.1| ribosomal protein L11 methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
 gi|123612443|sp|Q3SMB4|PRMA_THIDA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|74055693|gb|AAZ96133.1| ribosomal protein L11 methyltransferase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 296

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+ A  +G +  LL+  CG+G  ++  A+    RV  V+I   +V A+R N A N V+
Sbjct: 155 LRWLDANLRGGE-TLLDYGCGSGILAIAAAKLGARRVEGVDIDPQAVSASRDNAALNEVD 213


>gi|21674038|ref|NP_662103.1| hypothetical protein CT1213 [Chlorobium tepidum TLS]
 gi|21647187|gb|AAM72445.1| conserved hypothetical protein [Chlorobium tepidum TLS]
          Length = 394

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 4/121 (3%)

Query: 207 KGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                D+L++Y  +G F+L  +         V+I++ +++ A  N   N   N  IV   
Sbjct: 216 YAAGADVLDVYTNDGGFALNAMHAGAKSTTMVDISQEALQRAEQNARTNGFGNFSIVAAD 275

Query: 266 SKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
           + E    +R E     L  +D  S+   R          + L+   + +V+   ++   S
Sbjct: 276 AFETLGQLRHENHTFDLVILDPPSFTKSRKTVPTALKAYTKLNRLGLQLVRNEGYLATAS 335

Query: 323 C 323
           C
Sbjct: 336 C 336


>gi|81428745|ref|YP_395745.1| putative protoporphyrinogen oxidase, HemK [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610387|emb|CAI55437.1| Putative protoporphyrinogen oxidase, HemK [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 289

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 22/116 (18%)

Query: 195 NVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYN 250
              ++EWVL  A  K     +L++  G+G  ++ LA  R   +V AV+I+  ++  A+ N
Sbjct: 98  TEELVEWVLSVAPVKDRPLKVLDVGTGSGAIAITLACERPDWQVSAVDISPAAIAVAQQN 157

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                   V  +       T  M                 +F  I  +PP    D+
Sbjct: 158 AQTLGAK-VDFIEGD--FLTPVM---------------GQQFDVIVSNPPYIAEDE 195


>gi|146277053|ref|YP_001167212.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145555294|gb|ABP69907.1| magnesium protoporphyrin O-methyltransferase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 222

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK---- 267
            +L+  CG G  +  LA    +V AV+I+   VE AR  +   H++ V            
Sbjct: 62  RVLDAGCGAGQMTAELAARGAQVTAVDISPQLVEIARKRLPPEHLDRVTFASGDMLSDDL 121

Query: 268 ---EFTQAM-----RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
              ++  AM       + +  +  D      R   +F   PR+    A   M + +P 
Sbjct: 122 GPFDYVVAMDSLIYYTDEDIAKALDKLGARTRHSVVFTVAPRTPFLMAFWWMGKLFPR 179


>gi|323516123|gb|ADX90504.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 237

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERAGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|312837869|gb|ADR01068.1| NocQ [Nocardia sp. ATCC 202099]
          Length = 207

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            ++  +    +   G  L+L CG G  S+ LA H   V   +IA  ++  AR       V
Sbjct: 40  ELVALIEGPDRLAPGRALDLGCGTGGKSIYLAEHGWSVTGADIAPEALRRARKRAGDAGV 99

Query: 257 NNVKIVRMSSKEF 269
           + V+ V     + 
Sbjct: 100 D-VEFVECDLVDI 111


>gi|311069164|ref|YP_003974087.1| hypothetical protein BATR1942_11125 [Bacillus atrophaeus 1942]
 gi|310869681|gb|ADP33156.1| hypothetical protein BATR1942_11125 [Bacillus atrophaeus 1942]
          Length = 246

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 200 EW--VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           EW   + A+   +G +L+L CG G  S+ LA     V  ++I++  +  A+    A    
Sbjct: 21  EWTDWIEASLPQKGRVLDLACGTGEISIRLAEKGWEVTGIDISEEMLSYAQQ--KAAGKQ 78

Query: 258 NVKIVRMSSKEF 269
            +  ++   +E 
Sbjct: 79  PILFLQQDMREL 90


>gi|332873547|ref|ZP_08441496.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii 6014059]
 gi|322506247|gb|ADX01701.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter baumannii
           1656-2]
 gi|332738244|gb|EGJ69122.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii 6014059]
          Length = 237

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERAGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|169632065|ref|YP_001705801.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter baumannii
           SDF]
 gi|226695756|sp|B0VMN8|UBIG_ACIBS RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|169150857|emb|CAO99460.1| 3-demethylubiquinone-9 3-methyltransferase and
           2-octaprenyl-6-hydroxy phenol methylase [Acinetobacter
           baumannii]
          Length = 237

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERAGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|332529975|ref|ZP_08405925.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Hylemonella gracilis ATCC 19624]
 gi|332040448|gb|EGI76824.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Hylemonella gracilis ATCC 19624]
          Length = 283

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 31/140 (22%)

Query: 195 NVHMLEWVLAA------TKGIQGDLLELYCGNGNFSLVLAR------HFDRVLAVEIAKP 242
              +++W L         +     +++L  G+G  +L +AR          V A++++  
Sbjct: 95  TETLVDWALECLTDIGQAEDPPPQIIDLGTGSGAVALAMARFLAQTGRTGEVHALDVSPD 154

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++  A+ N     +                     +F     +   S R+  I  +PP  
Sbjct: 155 ALALAQANAERLDLR-------------------VQFMLGAWLTGISARYDLIVSNPPYI 195

Query: 303 GLDDATVGMVQAYPHILYIS 322
              D  +  +   P +  IS
Sbjct: 196 AEGDPHLAALGHEPRLALIS 215


>gi|264676910|ref|YP_003276816.1| modification methylase, HemK family [Comamonas testosteroni CNB-2]
 gi|262207422|gb|ACY31520.1| modification methylase, HemK family [Comamonas testosteroni CNB-2]
          Length = 291

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 20/125 (16%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              +++W L      Q   +++L  G+G  +L L   R   RV+AV+ +  ++  AR N 
Sbjct: 108 TETLVDWALELMPERQPVRVIDLGTGSGAIALALQSQRPSARVIAVDASADALAVARSNA 167

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A   +  V+    S              + L+ +D+       I  +PP    DD  +  
Sbjct: 168 ARLQLP-VQFAHGS---------WLEPLDGLEPVDL-------IVSNPPYIRADDPHLAA 210

Query: 312 VQAYP 316
           +   P
Sbjct: 211 LTHEP 215


>gi|326204204|ref|ZP_08194064.1| hypothetical protein Cpap_0804 [Clostridium papyrosolvens DSM 2782]
 gi|325985715|gb|EGD46551.1| hypothetical protein Cpap_0804 [Clostridium papyrosolvens DSM 2782]
          Length = 287

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 27/151 (17%)

Query: 167 VDERLTVAGRTLIYRQIENSFT-------Q-PNAGINVHMLEWVLAATKGIQGDLLELYC 218
           V +R TVA   L +      F        Q  N      M+  +  A + I+  +L L+ 
Sbjct: 69  VPKRWTVAFNDLKFYIEPTGFKHTGLFPEQSVNWK---WMINSIQKANRPIK--VLNLFA 123

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRE 276
             G  ++  A     V  V+ AK  V  A+ N+A + + +  V+ +     +F Q     
Sbjct: 124 YTGGATVATAYAGAEVCHVDAAKGMVSWAKENLALSGLADRPVRFITDDCMKFVQ----- 178

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           RE  R         ++  I +DPP  G    
Sbjct: 179 REIRR-------GKKYDGIIMDPPSYGRGPG 202


>gi|226939170|ref|YP_002794241.1| N6-adenine-specific methylase [Laribacter hongkongensis HLHK9]
 gi|226714094|gb|ACO73232.1| Possible N6-adenine-specific methylase [Laribacter hongkongensis
           HLHK9]
          Length = 191

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 21/108 (19%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L+ G+G       +RH  RV+ +E A+P     + N        + +V   + ++  
Sbjct: 57  VLDLFAGSGAMGFEAASRHAARVVMIEKARPVARQLQANARLLGCGRIHVVEADALQWLA 116

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
            +R                 F  I +DPP      AT  + QA P ++
Sbjct: 117 QVRE---------------SFDVIVMDPPF-----ATDLLAQALPRVV 144


>gi|16331764|ref|NP_442492.1| delta(24)-sterol C-methyltransferase [Synechocystis sp. PCC 6803]
 gi|1001725|dbj|BAA10562.1| delta(24)-sterol C-methyltransferase [Synechocystis sp. PCC 6803]
          Length = 317

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH 255
            +L W +         +L+L CG G  SL LA +H   V+   ++   VE A     A  
Sbjct: 82  ELLAWAVPQNSAKPRKILDLGCGIGGSSLYLAQQHQAEVMGASLSPVQVERAGERARALG 141

Query: 256 VN-NVKIVRMSSKEFTQA 272
           +    +    ++ +   A
Sbjct: 142 LGSTCQFQVANALDLPFA 159


>gi|297571232|ref|YP_003697006.1| methyltransferase small [Arcanobacterium haemolyticum DSM 20595]
 gi|296931579|gb|ADH92387.1| methyltransferase small [Arcanobacterium haemolyticum DSM 20595]
          Length = 210

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +L  V  +       + ++ CG G  +L LA  +   RV+A ++ + +V  A  N +
Sbjct: 46  TAVLLHKVPISDLEPGSVVADIGCGWGPITLALADTYPDARVVACDVNERAVALASKNCS 105

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDD 306
               +NV+     + +    +R E        ID        ++ +PP R G D+
Sbjct: 106 DLGFSNVQ--VGLADDVVAQLRDEISRGVHSGID-------VLWSNPPIRIGKDE 151


>gi|320009044|gb|ADW03894.1| hypothetical protein Sfla_2465 [Streptomyces flavogriseus ATCC
           33331]
          Length = 404

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           F  PN G+       V     G   +     + +L CG G  ++ LAR    VLAV+   
Sbjct: 81  FFTPN-GVEQATRTSVAVHRAGRFAELGVRSVADLCCGIGGDAIALARAGISVLAVDRDP 139

Query: 242 PSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +   AR N  A  + + V++      E   A   +  F            F      PP
Sbjct: 140 LTARVARANAEALGLQDLVEVRCADVTEIDTAPY-DAVFVDPARRGGRGRIFDPEAYSPP 198

Query: 301 RSGLDDATVGMVQAYPHIL 319
            S    A +   +A   I 
Sbjct: 199 LSWATGAALKAPRAALKIA 217


>gi|190576469|ref|YP_001974314.1| hypothetical protein Smlt4687 [Stenotrophomonas maltophilia K279a]
 gi|190014391|emb|CAQ48039.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 389

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 17/123 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA 253
                EW+    +G    +L+L C  G F++   AR    V+ ++I +  ++ A+ N   
Sbjct: 203 QRENREWLSQQVEGKS--VLDLCCNTGGFAVYAAARGASEVVGIDIDEDVIQIAKGNSRL 260

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMV 312
           N+V   K ++               F  L+D      ++  + +DP +   D D  +  +
Sbjct: 261 NNVR-PKFIQSD------------IFPWLRDAANRGEQYDVVILDPAKMTRDRDQVITAL 307

Query: 313 QAY 315
           + Y
Sbjct: 308 KKY 310


>gi|156975117|ref|YP_001446024.1| methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|156526711|gb|ABU71797.1| hypothetical protein VIBHAR_02844 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           LL++ CG G  ++ +A+  D  + ++IA+  ++ A+    A  ++N+  ++  + +F+
Sbjct: 30  LLDVCCGTGIVTIPVAKKLDNAVGIDIAEGMLKQAKR--KAQGLDNLSFLQQDATQFS 85


>gi|332967935|gb|EGK07023.1| 3-demethylubiquinone-9 3-O-methyltransferase [Kingella kingae ATCC
           23330]
          Length = 238

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYN 250
             IN   L+++    +     +L++ CG G  S  +A+   + VL +++A+ S++ A  +
Sbjct: 33  HDINPLRLDYIDQFAQLSGKTVLDVGCGGGILSESMAQRGAQSVLGIDMAELSLQTASAH 92

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
             AN V+NV+   +S ++    M    +     ++  H    ++I 
Sbjct: 93  AIANQVSNVQYRCISVEDLAAEMPHTFDVVSCMEMLEHVPDPESII 138


>gi|297799252|ref|XP_002867510.1| hypothetical protein ARALYDRAFT_492065 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313346|gb|EFH43769.1| hypothetical protein ARALYDRAFT_492065 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 617

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQ 271
           + +++ G G  +L  AR   RV A ++   +VE    N   N +   ++I  M  + F +
Sbjct: 445 VCDVFAGVGPIALAAARIVKRVYANDLNPHAVEFMEQNSVVNKLEKRIEIFNMDGRRFIK 504

Query: 272 AM--------RREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           AM          +   N  KD       F+ ++ D PR 
Sbjct: 505 AMFSSEKGRKVTQVVMNLPKDAAESLDAFRGVYNDRPRD 543


>gi|184156377|ref|YP_001844716.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter baumannii
           ACICU]
 gi|226695755|sp|B2I023|UBIG_ACIBC RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|183207971|gb|ACC55369.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
           [Acinetobacter baumannii ACICU]
          Length = 237

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERAGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAIGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|71066025|ref|YP_264752.1| ribosomal protein L11 methyltransferase [Psychrobacter arcticus
           273-4]
 gi|123648323|sp|Q4FRP0|PRMA_PSYA2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|71039010|gb|AAZ19318.1| LSU ribosomal protein L11P methyltransferase [Psychrobacter
           arcticus 273-4]
          Length = 308

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W+          +++  CG+G   +  L      V AV+I   +V A   N A N V+
Sbjct: 152 LDWLTEQDL-KDKVVIDYGCGSGILGIAALLLGARHVYAVDIDPQAVLATNQNAARNSVD 210

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           N ++     ++FT        F + +DI         I    P  GL      ++ +   
Sbjct: 211 N-RLQAFLPEDFT-------IFCQQQDIPAVEVMVANILA-KPLIGLAPYFATLMASKSR 261

Query: 318 IL 319
           I+
Sbjct: 262 IV 263


>gi|332360426|gb|EGJ38237.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           SK355]
          Length = 276

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 74/200 (37%), Gaps = 39/200 (19%)

Query: 110 LTSQSDQAIVTLIYHRLLDD-AWRECAIRLRDALHARKY------QIQLIGRANKTKICL 162
           L +  ++A      +R L++ ++ +  ++LR  +  ++       Q QL+       I  
Sbjct: 14  LVAAGEEAESLSFVYRALNELSFTDFVLKLRTEVSQKERDQLKVIQEQLLAHKPAQYIIG 73

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
             D+    L V  R LI R                ++E +L+        +L++  G+G 
Sbjct: 74  SSDFHGLTLKVDERVLIPRPE-----------TEELVELILSENPESSLSVLDIGTGSGA 122

Query: 223 FSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
            +L LA  R   ++ A ++++ ++  A  N     + N   V+    +  Q         
Sbjct: 123 IALALANSRPDWQITASDLSEDALSLAAENAQNCGL-NPTFVQSDCLDTIQG-------- 173

Query: 281 RLKDIDIHSYRFKTIFVDPP 300
                     +F  I  +PP
Sbjct: 174 ----------KFDIIVSNPP 183


>gi|304314357|ref|YP_003849504.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587816|gb|ADL58191.1| cobalt-precorrin-6Y C(15)-methyltransferase [Methanothermobacter
           marburgensis str. Marburg]
          Length = 188

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVR 263
           A  G     +++ CG G  +L L+R   RV A++ +  ++     N+  + + +NV ++ 
Sbjct: 29  ADPGKGDTAVDVGCGTGGVTLELSRRAGRVYAIDKSPDAISTTEMNLKKHGLGDNVTLIC 88

Query: 264 MSSKEFT 270
             + E  
Sbjct: 89  SDAVEAL 95


>gi|300696718|ref|YP_003747379.1| sam-dependent methyltransferase protein [Ralstonia solanacearum
           CFBP2957]
 gi|299073442|emb|CBJ52956.1| putative sam-dependent methyltransferase protein [Ralstonia
           solanacearum CFBP2957]
          Length = 274

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 9/125 (7%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANH 255
            M ++        Q  LL++  G+G  +L LAR+   RV  V+I    ++ AR       
Sbjct: 49  EMRQFSQWLELSPQSHLLDVCSGSGGPALFLARNSGCRVTGVDIHPDGLQTARQLAQELG 108

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           +           +F     R+R        D   +   ++   P R  L      +++  
Sbjct: 109 LQ-------DRSQFVDCDVRQRMPFPDGTFDAL-WCVDSVIHIPDRLALLREWCRLLKPG 160

Query: 316 PHILY 320
              LY
Sbjct: 161 GRFLY 165


>gi|298706546|emb|CBJ29516.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 225

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 23/135 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARY 249
           A +   M+         I+   +L+L CG G   +         V+ +++   ++ AA  
Sbjct: 35  AHLAARMVYTAEFEFGDIEDRSVLDLGCGTGMLGIAAGILGAGAVVGLDVDSGALSAAAE 94

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
           N  +  +  +  V                            RF T+ ++PP    R+G+D
Sbjct: 95  NAESMEI-GMDFVCCDVAR----------------NPCIPERFDTVLMNPPFGTRRAGID 137

Query: 306 DATVGMVQAYPHILY 320
              +         +Y
Sbjct: 138 VVFLERALEAAPTVY 152


>gi|239940188|ref|ZP_04692125.1| hypothetical protein SrosN15_04265 [Streptomyces roseosporus NRRL
           15998]
          Length = 505

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            + +   G +GD+L+L CG G+ SL+ A    RV AV+ +    E AR           +
Sbjct: 41  RLESWLPGTRGDVLDLGCGTGSLSLLAAGQGHRVTAVDRSPRMAEKAR--AKLAG-TGAE 97

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           ++   +        R     R  D+ +  +    +++ P  +   +   G+++    ++ 
Sbjct: 98  VLVGDAA-------RPPVGERAFDVVVARH---VVWLLPDPAAALEHWFGLLRPGGRLVL 147

Query: 321 I 321
           +
Sbjct: 148 V 148


>gi|169797755|ref|YP_001715548.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter baumannii
           AYE]
 gi|213155445|ref|YP_002317490.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii AB0057]
 gi|215485106|ref|YP_002327347.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii AB307-0294]
 gi|260557755|ref|ZP_05829969.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii ATCC 19606]
 gi|301347653|ref|ZP_07228394.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter baumannii
           AB056]
 gi|301511156|ref|ZP_07236393.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter baumannii
           AB058]
 gi|301595699|ref|ZP_07240707.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter baumannii
           AB059]
 gi|226695753|sp|B7H2Y9|UBIG_ACIB3 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|226695754|sp|B7IBN2|UBIG_ACIB5 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|226723584|sp|B0V5X4|UBIG_ACIBY RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|169150682|emb|CAM88592.1| 3-demethylubiquinone-9 3-methyltransferase and
           2-octaprenyl-6-hydroxy phenol methylase [Acinetobacter
           baumannii AYE]
 gi|213054605|gb|ACJ39507.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii AB0057]
 gi|213989132|gb|ACJ59431.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii AB307-0294]
 gi|260408928|gb|EEX02232.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii ATCC 19606]
          Length = 237

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERAGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|59802323|ref|YP_209035.1| hypothetical protein NGO2015 [Neisseria gonorrhoeae FA 1090]
 gi|59719218|gb|AAW90623.1| putative protoporphyrinogen oxidase [Neisseria gonorrhoeae FA 1090]
          Length = 285

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 84/232 (36%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 50  EEMPDEIRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPNVLIPRPE----- 99

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 100 ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISTPALET 152

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  ER++               I  +PP   +G 
Sbjct: 153 ARKNAADLGAR-VEFAHGS--WFDTDMPSERQW-------------DIIVSNPPYIENGD 196

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 197 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 247


>gi|27382345|ref|NP_773874.1| hypothetical protein bll7234 [Bradyrhizobium japonicum USDA 110]
 gi|27355516|dbj|BAC52499.1| bll7234 [Bradyrhizobium japonicum USDA 110]
          Length = 306

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A       LL++ CG G  ++  AR   +V  ++++   +E AR +    +++ V  V  
Sbjct: 77  AGVAAGQRLLDVGCGTGVVAITAARRGAKVRGLDLSPVLIERAREHAQLVNLD-VDFVDG 135

Query: 265 SSKEFTQAMRREREFNRLKDIDIH--SYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
            ++        + EF+ +     H  + R      +  R      T+      PH LY+
Sbjct: 136 DAESLP---YGDNEFDVVLSQFGHMFAPRPDVAIGEMLRVLKPGGTIAFSTWPPH-LYV 190


>gi|327405555|ref|YP_004346393.1| SAM-dependent methyltransferase [Fluviicola taffensis DSM 16823]
 gi|327321063|gb|AEA45555.1| SAM-dependent methyltransferase [Fluviicola taffensis DSM 16823]
          Length = 389

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A       +L  +C +G FSL  L      V +++ +K ++E    NI  N+  N 
Sbjct: 210 RALLAKYAEGAKILNTFCYSGGFSLAALKEGAREVHSLDSSKKAIELTDANIELNNFKNH 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           + +   +  F +    E +   L       +R K          L+   +  ++    ++
Sbjct: 270 QSIVADAMNFIRETGEEYDIVILDPPAFAKHRDKRHQAVQGYKRLNAMAIQHIRPGGLLM 329

Query: 320 YISC 323
             SC
Sbjct: 330 TYSC 333


>gi|307700840|ref|ZP_07637865.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Mobiluncus mulieris FB024-16]
 gi|307613835|gb|EFN93079.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Mobiluncus mulieris FB024-16]
          Length = 330

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 25/183 (13%)

Query: 173 VAGRTLIYRQIENSFTQPNAG---INVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLA 228
           +  R L  R     F         +    +E       +GI   +L+L CG+G   L +A
Sbjct: 78  MYFRGLKLRARPGVFV-VRPETEWVAEAGIETAQVWGAQGIPPQVLDLGCGSGALGLAVA 136

Query: 229 RHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--- 283
                  +++V+I+  +V   + N     +   +++   + +    +      +RL    
Sbjct: 137 AEVADTVLISVDISPEAVALTQENADLCGIK-ARVILADATDLGGLISALTADSRLAPHE 195

Query: 284 -DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342
            D    +   +      P    ++      +A P    I  NP             + IE
Sbjct: 196 TDRKAAATEGECQTEAAPHESENNGANET-KATPKFHVIVTNP------------PYVIE 242

Query: 343 RLA 345
            + 
Sbjct: 243 TVT 245


>gi|303246953|ref|ZP_07333229.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
 gi|302491660|gb|EFL51543.1| Methyltransferase type 11 [Desulfovibrio fructosovorans JJ]
          Length = 223

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 194 INVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            + + + W +LA        LL++ CG G  S+ L+R    V  V++    +  A   +A
Sbjct: 37  QDQYEVNWSILAKHVTPNSRLLDVGCGPGTLSIRLSRRCREVWGVDVTPEMIRVAEEKLA 96

Query: 253 ANHVNNVKIVRMSSKEF 269
                NV      + + 
Sbjct: 97  C-EPANVCFQEADACDL 112


>gi|299772074|ref|YP_003734100.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter sp. DR1]
 gi|298702162|gb|ADI92727.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter sp. DR1]
          Length = 237

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERVGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
              ++V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQDNVQNIEYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|86742400|ref|YP_482800.1| HemK family modification methylase [Frankia sp. CcI3]
 gi|86569262|gb|ABD13071.1| modification methylase, HemK family [Frankia sp. CcI3]
          Length = 338

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 48/145 (33%), Gaps = 18/145 (12%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD------LLELYCGNGNFSLVL 227
             R L        F  P       ++EW L    G  G        ++L  G+G  +L L
Sbjct: 118 GFRHLDLTVGPGVFI-PRPE-TESVVEWALTELTGSAGARRPGPLCVDLCAGSGAIALSL 175

Query: 228 ARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER-------- 277
           A       V AVE+   +V   R NIA   +         +    +++ R          
Sbjct: 176 AAELPGATVHAVEVDPAAVVWLRRNIAGTGLPVTAHAADIAAALPESLTRLAGTVDLIIS 235

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRS 302
               L D D H+   +    DP R+
Sbjct: 236 NPPYLPDADRHTVEPEVGEHDPARA 260


>gi|62289127|ref|YP_220920.1| SAM dependent methyltransferase [Brucella abortus bv. 1 str. 9-941]
 gi|62195259|gb|AAX73559.1| SAM dependent methyltransferase, hypothetical [Brucella abortus bv.
           1 str. 9-941]
          Length = 381

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 67/184 (36%), Gaps = 23/184 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 159 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  SLV AR    V  V+ +K ++  AR N     +++ K +R   ++  + +RRE    
Sbjct: 217 GVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSD-KPIRWICEDAMKFVRREER-- 273

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILSTT 338
                      +  I +DPP  G         + +  P ++  +C      + L+++ T 
Sbjct: 274 -------RGSFYDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAVILTA 325

Query: 339 HTIE 342
           ++I 
Sbjct: 326 YSIR 329


>gi|226944720|ref|YP_002799793.1| hypothetical protein Avin_26420 [Azotobacter vinelandii DJ]
 gi|226719647|gb|ACO78818.1| hypothetical protein Avin_26420 [Azotobacter vinelandii DJ]
          Length = 265

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             V          LL++  G G  ++  AR   +V A++I++P ++    N AA  V+N+
Sbjct: 45  AQVDILGLRPDESLLDVGAGPGRLAIPAARRARQVTALDISRPMLDELERNAAAAGVDNI 104

Query: 260 KIVRMSSKEFTQA----------MRREREFNRLKDIDIHSYRFKTIFV--DPPRSGLDDA 307
           + ++++  +              + R      L  +D    R   + +   P      D 
Sbjct: 105 QPLQIAWDKVLPGENVPLHDVVLLSRSPAMRDLAKVDALVRRAAYVMLYSGPSLKSFHDR 164

Query: 308 TVGMVQAYPHI 318
            V  ++  P +
Sbjct: 165 LVAGIEETPPV 175


>gi|289624668|ref|ZP_06457622.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330871120|gb|EGH05829.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 398

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 272 MTCIEGDV------------FEALKELKAGEERFDVIVADPPAFIKRKKDMKNGKGAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNEQAMRLLSKDGILVSASC 339


>gi|282889953|ref|ZP_06298488.1| hypothetical protein pah_c008o042 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500146|gb|EFB42430.1| hypothetical protein pah_c008o042 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 389

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 73/228 (32%), Gaps = 23/228 (10%)

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            + QI  +  +  + ++    +RLL          L           Q I   N      
Sbjct: 122 LVIQISTMGMERLKGLIVSELNRLLAPQLIYEKSLLPSRKEEGLQPFQDILMGN------ 175

Query: 163 DRDYVDERLTVAGRTLIYRQI-----ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
               + + + +    L ++       +  F   +  +   + +         Q  +L  +
Sbjct: 176 ----LPDEVEIFENGLRFKVSIVQGQKTGFFLDHREMRQEIRQLAA------QKRVLNCF 225

Query: 218 CGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEFTQAMRR 275
              G FS+  +A   + V +V+I++ ++E A+ N+  N      +       EF ++   
Sbjct: 226 SYTGGFSVYAVAGGAESVDSVDISEKAIEEAKINMELNSSQCKSEFYCEDVFEFLRSSTL 285

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
           + +   L        +   I        ++   +  +     +L  SC
Sbjct: 286 DYDLVILDPPAFAKKKSDQISACRAYKDINRVAMQKMPKGSLLLTSSC 333


>gi|206577774|ref|YP_002240746.1| methyltransferase family protein [Klebsiella pneumoniae 342]
 gi|206566832|gb|ACI08608.1| methyltransferase family protein [Klebsiella pneumoniae 342]
          Length = 545

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 7/132 (5%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
           D  +       +   A ++KI  D     +R+      L       S  Q    +    +
Sbjct: 2   DISNLISASRHIQLSAEESKIPWDEPAFSQRMLANH--LSQDHDWASRRQ---EVIERQV 56

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           EW+ +        +L+L CG G ++  LA        V+ +  SV  AR       + N+
Sbjct: 57  EWIASL-LPPGARILDLGCGPGFYTHRLAERGFHCTGVDFSPASVSWARQQAQNAGM-NI 114

Query: 260 KIVRMSSKEFTQ 271
             V+   + +  
Sbjct: 115 DYVQQDVRAYWP 126


>gi|311696382|gb|ADP99255.1| conserved hypothetical protein [marine bacterium HP15]
          Length = 216

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 18/125 (14%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             +  W+     G   D L+L+ G+G   L  L+R   +   V+       A R N+   
Sbjct: 62  ETLFNWLAFHLAGS--DCLDLFAGSGALGLEALSRGAGQATLVDHTPALARALRDNLRLL 119

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
             +N ++V    + +     R                F  +F+DPP R G  +    +++
Sbjct: 120 KSDNGEVVCSDVESYLAQRNRPP--------------FDIVFMDPPFRQGWLEKLFPLLE 165

Query: 314 AYPHI 318
               I
Sbjct: 166 QQAWI 170


>gi|257482977|ref|ZP_05637018.1| hypothetical protein PsyrptA_06961 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330891351|gb|EGH24012.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. mori str.
           301020]
 gi|330985922|gb|EGH84025.1| SAM-dependent methyltransferase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011782|gb|EGH91838.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 398

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 272 MTCIEGDV------------FEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEGAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNEQAMRLLSKDGILVSASC 339


>gi|83719769|ref|YP_442053.1| protein-L-isoaspartate O-methyltransferase [Burkholderia
           thailandensis E264]
 gi|167618994|ref|ZP_02387625.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           thailandensis Bt4]
 gi|257138235|ref|ZP_05586497.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           thailandensis E264]
 gi|83653594|gb|ABC37657.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           thailandensis E264]
          Length = 217

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++LE+  G+G  + +LA    RV  VEI     + A  N+
Sbjct: 63  PRVEARVLQELAVKKHE---NVLEIGAGSGYMAALLAARGQRVTTVEIDPDLAKFAEENL 119

Query: 252 AANHVNNVKIVRMS 265
             N V N ++V   
Sbjct: 120 KKNGVTNAEVVLGD 133


>gi|71736452|ref|YP_276895.1| hypothetical protein PSPPH_4795 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557005|gb|AAZ36216.1| conserved hypothetical protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320326358|gb|EFW82411.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331651|gb|EFW87589.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 398

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 272 MTCIEGDV------------FEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEGAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNEQAMRLLSKDGILVSASC 339


>gi|19704666|ref|NP_604228.1| methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714974|gb|AAL95527.1| Methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 354

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 19/115 (16%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNI 251
              ++E  +   + ++  ++L++  G+G  S+ +A       V  ++I + +++ A  N 
Sbjct: 151 TEILVEQCIQLMREVEEPNILDIGSGSGAISIAVANELKSSSVTGIDINEKAIKLAIENK 210

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
             N + NV  +               E N    +D   +++  I  +PP    D+
Sbjct: 211 ILNKIENVNFI---------------ESNLFGKLD-KDFKYDLIVSNPPYISKDE 249


>gi|325141378|gb|EGC63860.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis 961-5945]
          Length = 245

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|289648508|ref|ZP_06479851.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 398

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 272 MTCIEGDV------------FEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEGAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNEQAMRLLSKDGILVSASC 339


>gi|320537615|ref|ZP_08037551.1| hypothetical protein HMPREF9554_02303 [Treponema phagedenis F0421]
 gi|320145533|gb|EFW37213.1| hypothetical protein HMPREF9554_02303 [Treponema phagedenis F0421]
          Length = 281

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVL-AVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                  +L L+C  G F++  A      + +V+++K  +  A+ N+  N   + K    
Sbjct: 96  QIAANKKILNLFCYTGAFTVHAASGGAAAIDSVDLSKTYLSRAQKNMQLNGFTDTKRYSF 155

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              +  Q +++  E  +         ++  I  DPP
Sbjct: 156 IHADVIQFLQKAAEDRK---------KWDIIICDPP 182


>gi|294085839|ref|YP_003552599.1| putative O-methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665414|gb|ADE40515.1| Predicted O-methyltransferase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 253

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV-NN 258
           + AA       +L++ CG G  +L +A+      V AVEI    +  A  NI  N++   
Sbjct: 37  LAAAVPQRTKRILDMGCGVGGVALCIAKRLPDVHVTAVEIDPDMLALAERNIKDNNLAAQ 96

Query: 259 VKIVRMSSKEFTQAMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           ++++    K  +  +    +   +     D    R +         G D      V+A
Sbjct: 97  IRLLTGDIKALSPVLANSFDHVVSNPPYHDTRGTRPQNRSRALAHMGEDTKLADWVKA 154


>gi|289565392|ref|ZP_06445842.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|294615414|ref|ZP_06695287.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1636]
 gi|289162882|gb|EFD10732.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291591788|gb|EFF23424.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1636]
          Length = 210

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 18/120 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
             +++         +G +L++ CG G   L LA    R V  V+I + +V  A+ N   N
Sbjct: 56  RVLIDAFDWEELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVSLAQGNAKRN 115

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + +V I + +  E                  +H   +  I  +PP          ++  
Sbjct: 116 QIEHVDIHQSNIYE-----------------AVHEETYAAIVSNPPIRAGKKVVHKILTG 158


>gi|227357580|ref|ZP_03841933.1| methyltransferase [Proteus mirabilis ATCC 29906]
 gi|227162290|gb|EEI47294.1| methyltransferase [Proteus mirabilis ATCC 29906]
          Length = 274

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 14/124 (11%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +++++           LL++ CG G+ S+ +A  F +++ ++ +   +  A+   A   +
Sbjct: 48  YLIKFREMMDFSDAETLLDVGCGPGSISIHVADKFKKIIGIDYSTGMLTVAKRRAAQAGI 107

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           ++   +             E  ++ L   DI      T+ +D     L  A + + +   
Sbjct: 108 HHADFLH---------YSWEDNWDALPPCDIAVASRSTLVMD-----LKAALLKLNRQAK 153

Query: 317 HILY 320
             +Y
Sbjct: 154 LRVY 157


>gi|194215085|ref|XP_001916357.1| PREDICTED: similar to TRNA methyltransferase 12 homolog (S.
           cerevisiae) [Equus caballus]
          Length = 439

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 13/193 (6%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    +   A +  E  L     +   L   S+       +  L  + W+  A
Sbjct: 99  CLEVSRWVEDRGVTWSAEL--EDDLPRSWQRHGNLLLLSEDCFQAKQWKNLEPELWKTVA 156

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G        L  D+        G    +   +   SF      
Sbjct: 157 SALGVQRLAKRGRVSPDGARTPAVTLLLGDHGWVEHVDNGILYKFDVTQCMFSF----GN 212

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNI 251
           I   +   V +     + +L++LY G G F+L    H     V A E    +V A R N+
Sbjct: 213 ITEKL--RVASLPCAGE-ELVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNL 269

Query: 252 AANHVNNVKIVRM 264
             N V +   +  
Sbjct: 270 EINGVAHQCQIHF 282


>gi|221134589|ref|ZP_03560894.1| ubiquinone biosynthesis O-methyltransferase [Glaciecola sp.
           HTCC2999]
          Length = 244

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            ++++ CG G  +  LA H   V+ +++A+ S+  AR +     + NV    + ++EF 
Sbjct: 62  KIVDIGCGGGILAEALASHGAHVVGIDLAEESLTVARLHALETGLKNVTYELICAEEFA 120


>gi|119358085|ref|YP_912729.1| Mg-protoporphyrin IX methyl transferase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119355434|gb|ABL66305.1| magnesium protoporphyrin O-methyltransferase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 231

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 22/160 (13%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
            E    LR   + + +Q       +  K+   R  V E  TV         ++ +F    
Sbjct: 9   EEHKKMLRSYFNGQGFQRWASIYGDD-KLSTVRKTVREGHTVM--------MDKAF---- 55

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                   EW+       +  +L+  CG G FS+ +A+   +V AV+IA   V+ A+ + 
Sbjct: 56  --------EWLRKLALPPESSVLDAGCGTGLFSIRIAKEGYKVKAVDIASQMVDKAKADA 107

Query: 252 AANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
                  N+     + +           F+ L       +
Sbjct: 108 IKKGVAKNIDFEVNTIESVKGKYDVVVCFDVLIHYPAEGF 147


>gi|329900834|ref|ZP_08272602.1| 3-demethylubiquinone-9 3-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549362|gb|EGF33932.1| 3-demethylubiquinone-9 3-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 253

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 60/156 (38%), Gaps = 20/156 (12%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   LEW+ A        +L++ CG G  +  +AR   +V  +++++ +++ A  + 
Sbjct: 50  HQINPLRLEWINARVPLANKTVLDIGCGGGILAQSMARKGAKVTGIDLSEKALKVADLHS 109

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               ++ ++   +S++   +      +     ++  H    + I           A   +
Sbjct: 110 LEAGID-MRYEMISAENMAEREPASFDVVTCMEMLEHVPDPEAIV---------RACATL 159

Query: 312 VQAYPHILYISCNPDSLCRD-----LSILSTTHTIE 342
           V+    I +      +L R+      +IL   + + 
Sbjct: 160 VKPGGKIFF-----STLNRNPKSYLFAILGAEYILR 190


>gi|294994882|ref|ZP_06800573.1| hypothetical protein Mtub2_10319 [Mycobacterium tuberculosis 210]
          Length = 123

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + GD+L++ CG G+ ++ LAR+  +V  ++I+  ++  A+   +   V+ VK     + +
Sbjct: 45  VHGDVLDIGCGLGDNAIYLARNGYQVTGLDISPTALTTAKRRASDAGVD-VKFAVGDATK 103

Query: 269 FT 270
            T
Sbjct: 104 LT 105


>gi|293409599|ref|ZP_06653175.1| hypothetical protein ECEG_00538 [Escherichia coli B354]
 gi|331672744|ref|ZP_08373530.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli TA280]
 gi|291470067|gb|EFF12551.1| hypothetical protein ECEG_00538 [Escherichia coli B354]
 gi|331069965|gb|EGI41334.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli TA280]
          Length = 277

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    +V  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAVSLAQRNAQNLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+   +    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGHQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|294671163|ref|ZP_06736017.1| hypothetical protein NEIELOOT_02871 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307101|gb|EFE48344.1| hypothetical protein NEIELOOT_02871 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 239

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  S  +A      VL +++A+ S++ A  +
Sbjct: 36  HDINPIRLDYIDRFAGLAGKKVLDVGCGGGILSESMADRGAAEVLGIDLAEKSLQTAENH 95

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
                ++N+    +S ++      +  +     ++  H      I     R       V 
Sbjct: 96  AKMRQLDNIAYRCVSVEDLAAETPQAYDVVTCMEMMEHVPDPAAIIRSCARLAKPGGMVF 155

Query: 310 -GMVQAYPH 317
              +   P 
Sbjct: 156 FSTINRNPK 164


>gi|182435968|ref|YP_001823687.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776592|ref|ZP_08235857.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464484|dbj|BAG19004.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326656925|gb|EGE41771.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces cf. griseus XylebKG-1]
          Length = 281

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 38/188 (20%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
            + R  A  L   +H  K                D  Y +       R  +      +F 
Sbjct: 21  PSPRFDAEELAAFVHGVKRGALHTVPDTD----FDARYWETIARREAREPLQHITGRAFF 76

Query: 189 -----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHF--D 232
                Q   G+         ++ W + A +    ++  +++L  G+G  +L +A+     
Sbjct: 77  RYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPVVVDLCTGSGAIALAMAQEVPRS 136

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           RV AVE+++ ++   R N      + V + R  +             + L ++D    + 
Sbjct: 137 RVHAVELSEDALRWTRKNAEG---SRVTVHRGDA------------LSALPELD---GQV 178

Query: 293 KTIFVDPP 300
             +  +PP
Sbjct: 179 DLVISNPP 186


>gi|169825664|ref|YP_001695822.1| hypothetical protein Bsph_0054 [Lysinibacillus sphaericus C3-41]
 gi|168990152|gb|ACA37692.1| Hypothetical yabB protein [Lysinibacillus sphaericus C3-41]
          Length = 249

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 16/112 (14%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
           +G++++L  GNG   L L+ R   ++  VE+    ++ A  +I  N + N ++++    K
Sbjct: 47  KGNIVDLCSGNGVIPLFLSVRTKGQITGVELQPRLLDMAERSIRYNQLENQIQMILGDVK 106

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           E  + +  E              ++  +  +PP     +A+   +  +  I 
Sbjct: 107 EIPKQLGIE--------------KYDVVTCNPPYFLAHEASDKNLSEHHAIA 144


>gi|167751881|ref|ZP_02424008.1| hypothetical protein ALIPUT_00123 [Alistipes putredinis DSM 17216]
 gi|167660122|gb|EDS04252.1| hypothetical protein ALIPUT_00123 [Alistipes putredinis DSM 17216]
          Length = 398

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 15/118 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L         +L  +C  G FS+  LA     V +++ ++ +V  A  N+  N       
Sbjct: 219 LVRRYARGRTVLNTFCYTGGFSVYALAGGAREVCSIDSSERAVALADANVRLN------- 271

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
                +E             LKDI     R+  I +DPP        +G  +Q Y  +
Sbjct: 272 ---FGEEAPHTSLAVDAVEYLKDI---GDRYDMIILDPPAFAKHHKVLGNAMQGYKRL 323


>gi|163851886|ref|YP_001639929.1| methyltransferase small [Methylobacterium extorquens PA1]
 gi|163663491|gb|ABY30858.1| methyltransferase small [Methylobacterium extorquens PA1]
          Length = 340

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
            +  H+ E   A     +  + ++ CG+G   +++A+      V+ V+I   ++ AAR N
Sbjct: 143 AVLAHLEERARAGHPAPR-RVADIGCGSGAAGILVAKRLPEAEVVLVDINPAALRAARIN 201

Query: 251 IAANHVNNVKIVRMSS 266
                V NV+ V    
Sbjct: 202 ARLAGVGNVRPVHSDM 217


>gi|88602122|ref|YP_502300.1| hypothetical protein Mhun_0829 [Methanospirillum hungatei JF-1]
 gi|88187584|gb|ABD40581.1| methyltransferase [Methanospirillum hungatei JF-1]
          Length = 288

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F+Q N           +A        + +++ G G F+L +A+    + A+EI   +V  
Sbjct: 131 FSQGNREEKQR-----IANLVKPGEQICDMFAGIGYFTLPMAKAGGFIHALEINPDAVHY 185

Query: 247 ARYNIAANHVNNVKIVRM 264
              N+  N +++   + M
Sbjct: 186 LEKNVRENALDSRIRITM 203


>gi|15840835|ref|NP_335872.1| hypothetical protein MT1421 [Mycobacterium tuberculosis CDC1551]
 gi|308231825|ref|ZP_07663943.1| transferase [Mycobacterium tuberculosis SUMu001]
 gi|308369784|ref|ZP_07666806.1| transferase [Mycobacterium tuberculosis SUMu002]
 gi|308370704|ref|ZP_07666994.1| transferase [Mycobacterium tuberculosis SUMu003]
 gi|308371952|ref|ZP_07667275.1| transferase [Mycobacterium tuberculosis SUMu004]
 gi|308373126|ref|ZP_07667515.1| transferase [Mycobacterium tuberculosis SUMu005]
 gi|308374299|ref|ZP_07667754.1| transferase [Mycobacterium tuberculosis SUMu006]
 gi|308377713|ref|ZP_07668577.1| transferase [Mycobacterium tuberculosis SUMu009]
 gi|308378924|ref|ZP_07668862.1| transferase [Mycobacterium tuberculosis SUMu010]
 gi|308380061|ref|ZP_07669110.1| transferase [Mycobacterium tuberculosis SUMu011]
 gi|308399941|ref|ZP_07493057.2| methyltransferase domain protein [Mycobacterium tuberculosis
           SUMu012]
 gi|13881033|gb|AAK45686.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|308215938|gb|EFO75337.1| transferase [Mycobacterium tuberculosis SUMu001]
 gi|308326450|gb|EFP15301.1| transferase [Mycobacterium tuberculosis SUMu002]
 gi|308331173|gb|EFP20024.1| transferase [Mycobacterium tuberculosis SUMu003]
 gi|308334955|gb|EFP23806.1| transferase [Mycobacterium tuberculosis SUMu004]
 gi|308338760|gb|EFP27611.1| transferase [Mycobacterium tuberculosis SUMu005]
 gi|308342459|gb|EFP31310.1| transferase [Mycobacterium tuberculosis SUMu006]
 gi|308354871|gb|EFP43722.1| transferase [Mycobacterium tuberculosis SUMu009]
 gi|308358812|gb|EFP47663.1| transferase [Mycobacterium tuberculosis SUMu010]
 gi|308362759|gb|EFP51610.1| transferase [Mycobacterium tuberculosis SUMu011]
 gi|308366413|gb|EFP55264.1| methyltransferase domain protein [Mycobacterium tuberculosis
           SUMu012]
          Length = 226

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + GD+L++ CG G+ ++ LAR+  +V  ++I+  ++  A+   +   V+ VK     + +
Sbjct: 59  VHGDVLDIGCGLGDNAIYLARNGYQVTGLDISPTALTTAKRRASDAGVD-VKFAVGDATK 117

Query: 269 FT 270
            T
Sbjct: 118 LT 119


>gi|15608517|ref|NP_215893.1| putative transferase [Mycobacterium tuberculosis H37Rv]
 gi|31792571|ref|NP_855064.1| putative transferase [Mycobacterium bovis AF2122/97]
 gi|121637307|ref|YP_977530.1| putative transferase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661168|ref|YP_001282691.1| hypothetical protein MRA_1386 [Mycobacterium tuberculosis H37Ra]
 gi|148822597|ref|YP_001287351.1| transferase [Mycobacterium tuberculosis F11]
 gi|167968429|ref|ZP_02550706.1| hypothetical transferase [Mycobacterium tuberculosis H37Ra]
 gi|215403225|ref|ZP_03415406.1| hypothetical protein Mtub0_05906 [Mycobacterium tuberculosis
           02_1987]
 gi|215411022|ref|ZP_03419830.1| hypothetical protein Mtub9_06743 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426703|ref|ZP_03424622.1| hypothetical protein MtubT9_10065 [Mycobacterium tuberculosis T92]
 gi|215430262|ref|ZP_03428181.1| hypothetical protein MtubE_06209 [Mycobacterium tuberculosis
           EAS054]
 gi|215445560|ref|ZP_03432312.1| hypothetical protein MtubT_06312 [Mycobacterium tuberculosis T85]
 gi|218753085|ref|ZP_03531881.1| hypothetical protein MtubG1_06439 [Mycobacterium tuberculosis GM
           1503]
 gi|224989782|ref|YP_002644469.1| putative transferase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253799574|ref|YP_003032575.1| transferase [Mycobacterium tuberculosis KZN 1435]
 gi|254231626|ref|ZP_04924953.1| hypothetical protein TBCG_01357 [Mycobacterium tuberculosis C]
 gi|254364266|ref|ZP_04980312.1| hypothetical transferase [Mycobacterium tuberculosis str. Haarlem]
 gi|254550390|ref|ZP_05140837.1| hypothetical protein Mtube_08005 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260186315|ref|ZP_05763789.1| hypothetical protein MtubCP_09837 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200432|ref|ZP_05767923.1| hypothetical protein MtubT4_09958 [Mycobacterium tuberculosis T46]
 gi|260204637|ref|ZP_05772128.1| hypothetical protein MtubK8_10071 [Mycobacterium tuberculosis K85]
 gi|289442820|ref|ZP_06432564.1| transferase [Mycobacterium tuberculosis T46]
 gi|289446972|ref|ZP_06436716.1| transferase [Mycobacterium tuberculosis CPHL_A]
 gi|289554833|ref|ZP_06444043.1| transferase [Mycobacterium tuberculosis KZN 605]
 gi|289574043|ref|ZP_06454270.1| transferase [Mycobacterium tuberculosis K85]
 gi|289745127|ref|ZP_06504505.1| transferase [Mycobacterium tuberculosis 02_1987]
 gi|289749930|ref|ZP_06509308.1| transferase [Mycobacterium tuberculosis T92]
 gi|289753457|ref|ZP_06512835.1| transferase [Mycobacterium tuberculosis EAS054]
 gi|289757482|ref|ZP_06516860.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761536|ref|ZP_06520914.1| transferase [Mycobacterium tuberculosis GM 1503]
 gi|294994937|ref|ZP_06800628.1| hypothetical protein Mtub2_10610 [Mycobacterium tuberculosis 210]
 gi|297633930|ref|ZP_06951710.1| hypothetical protein MtubK4_07400 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730919|ref|ZP_06960037.1| hypothetical protein MtubKR_07500 [Mycobacterium tuberculosis KZN
           R506]
 gi|298524882|ref|ZP_07012291.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306803080|ref|ZP_07439748.1| transferase [Mycobacterium tuberculosis SUMu008]
 gi|306807276|ref|ZP_07443944.1| transferase [Mycobacterium tuberculosis SUMu007]
 gi|313658252|ref|ZP_07815132.1| hypothetical protein MtubKV_07520 [Mycobacterium tuberculosis KZN
           V2475]
 gi|1621259|emb|CAB02638.1| PUTATIVE TRANSFERASE [Mycobacterium tuberculosis H37Rv]
 gi|31618160|emb|CAD94273.1| PUTATIVE TRANSFERASE [Mycobacterium bovis AF2122/97]
 gi|121492954|emb|CAL71425.1| Putative transferase [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600685|gb|EAY59695.1| hypothetical protein TBCG_01357 [Mycobacterium tuberculosis C]
 gi|134149780|gb|EBA41825.1| hypothetical transferase [Mycobacterium tuberculosis str. Haarlem]
 gi|148505320|gb|ABQ73129.1| hypothetical protein MRA_1386 [Mycobacterium tuberculosis H37Ra]
 gi|148721124|gb|ABR05749.1| hypothetical transferase [Mycobacterium tuberculosis F11]
 gi|224772895|dbj|BAH25701.1| putative transferase [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321077|gb|ACT25680.1| transferase [Mycobacterium tuberculosis KZN 1435]
 gi|289415739|gb|EFD12979.1| transferase [Mycobacterium tuberculosis T46]
 gi|289419930|gb|EFD17131.1| transferase [Mycobacterium tuberculosis CPHL_A]
 gi|289439465|gb|EFD21958.1| transferase [Mycobacterium tuberculosis KZN 605]
 gi|289538474|gb|EFD43052.1| transferase [Mycobacterium tuberculosis K85]
 gi|289685655|gb|EFD53143.1| transferase [Mycobacterium tuberculosis 02_1987]
 gi|289690517|gb|EFD57946.1| transferase [Mycobacterium tuberculosis T92]
 gi|289694044|gb|EFD61473.1| transferase [Mycobacterium tuberculosis EAS054]
 gi|289709042|gb|EFD73058.1| transferase [Mycobacterium tuberculosis GM 1503]
 gi|289713046|gb|EFD77058.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494676|gb|EFI29970.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308346300|gb|EFP35151.1| transferase [Mycobacterium tuberculosis SUMu007]
 gi|308350228|gb|EFP39079.1| transferase [Mycobacterium tuberculosis SUMu008]
 gi|323720130|gb|EGB29234.1| transferase [Mycobacterium tuberculosis CDC1551A]
 gi|326903000|gb|EGE49933.1| transferase [Mycobacterium tuberculosis W-148]
 gi|328459322|gb|AEB04745.1| transferase [Mycobacterium tuberculosis KZN 4207]
          Length = 212

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + GD+L++ CG G+ ++ LAR+  +V  ++I+  ++  A+   +   V+ VK     + +
Sbjct: 45  VHGDVLDIGCGLGDNAIYLARNGYQVTGLDISPTALTTAKRRASDAGVD-VKFAVGDATK 103

Query: 269 FT 270
            T
Sbjct: 104 LT 105


>gi|330872375|gb|EGH06524.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 366

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 272 MTCIEGDV------------FEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEGAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNEQAMRLLSKDGILVSASC 339


>gi|307265960|ref|ZP_07547508.1| RNA methyltransferase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919024|gb|EFN49250.1| RNA methyltransferase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 143

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 10/116 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIH-YRMRAEFHIWHDGDD 57
             T     Y+ QL  K D ++++    ++   +   I +S   H YR + E+    D + 
Sbjct: 29  GCTYQNVSYQDQLKIKEDIMKKLFEKEEITEYEFLGIVKSPKEHGYRNKMEYTFGKDKEG 88

Query: 58  LYHIMFDQQTK--ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLT 111
              +   ++ +  E +  D       ++    ++ +       + +  LF    L 
Sbjct: 89  NAALGLHRKGRFYEVIMTDKC----NIVEDDFLKALNLTFDYAIKKDFLFMTKRLM 140


>gi|268326451|emb|CBH40039.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 11 family [uncultured archaeon]
          Length = 280

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ++E  L     ++ ++L++  G G   +  A+   +V A+E A   VE  + N     
Sbjct: 53  RKVVE-ALRELITLESEVLDIGAGPGTLLIPFAKKVRKVTAIEPATGMVECLKRNAERKG 111

Query: 256 VNNVKIV 262
           + + + +
Sbjct: 112 IESFEFI 118


>gi|294867175|ref|XP_002764988.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239864868|gb|EEQ97705.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 414

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 30/251 (11%)

Query: 54  DGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ 113
           D  +   I F        ++  F   S  I    +   A +  E +LR  L     + S 
Sbjct: 63  DPKNNKIICFKADADLPKKVRNFGVISHEI----VRGYAQMSTEEILRKVLPANLEVPSS 118

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC-LDRDYVDERLT 172
            +   +  I H  L D+       + + +  +   I+L+     TK+  L  ++    L 
Sbjct: 119 FES--IGHIAHFNLKDSHLPYKKIIGEVILDKNPAIKLVV----TKVANLHNEFRTMELE 172

Query: 173 VA-------GRTLIYRQIENS------FTQP--NAGINVHMLEWVLAATKGIQGDLLELY 217
           V            I    EN       F++   N+ +   M + +L         ++++ 
Sbjct: 173 VMACADGCDPTDFITTVKENGMQFKMDFSKVYWNSRL-STMRQGLLEDLNSSNSVVVDMC 231

Query: 218 CGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMR 274
           CG G F ++ A+    +V A ++   S +    N   N V +  + I     +EF + + 
Sbjct: 232 CGIGAFVIMAAKKIGCKVYANDLNPESTKWCLENAKLNKVPSGLMTISTEDGREFVKRLV 291

Query: 275 REREFNRLKDI 285
            E  F+  KD 
Sbjct: 292 SEGVFDEKKDF 302


>gi|237802338|ref|ZP_04590799.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331025195|gb|EGI05251.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 398

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 212 RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 272 MTCIEGDV------------FEALKELKAGEERFDVIVADPPAFIKRKKDMKNGEGAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 320 LNEQAMRLLSKDGILVSASC 339


>gi|256425069|ref|YP_003125722.1| arsenite S-adenosylmethyltransferase [Chitinophaga pinensis DSM
           2588]
 gi|256039977|gb|ACU63521.1| Methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
          Length = 279

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A       +++L  G GN    +ARH      +V+ ++     +E AR N A    NNV+
Sbjct: 71  ARIKTGDTVIDLGSGAGN-DCFIARHETGESGKVIGIDFTPAMIERARINAATRGYNNVE 129

Query: 261 IVRMSSKE 268
             +   ++
Sbjct: 130 FRQGDIEK 137


>gi|289806130|ref|ZP_06536759.1| 23S rRNA 5-methyluridine methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 236

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 9/145 (6%)

Query: 13  QLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQ-QTKERM 71
           Q   K   L ++M   +V ++    S    YR RA   +    D    + F +  + + +
Sbjct: 100 QQRSKSAALARLM-KHEVNDIIAGAS--WGYRRRARLSLNCPPDKPLQMGFRKAGSSDIV 156

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            ++     +  + AL+  + A +      R  L  ++ + + S   ++ L +   L  A 
Sbjct: 157 NVEQCPVLAPQLEALLPRIRACLASLHGTRH-LGHVELVQAGSGTLMI-LRHTAPLSAAD 214

Query: 132 RECAIRLRDALHARKYQIQLIGRAN 156
           +E   R     H+    + L   + 
Sbjct: 215 KEKLERFS---HSEGLSLFLAPFSE 236


>gi|281420039|ref|ZP_06251038.1| ribosomal protein L11 methyltransferase [Prevotella copri DSM
           18205]
 gi|281405839|gb|EFB36519.1| ribosomal protein L11 methyltransferase [Prevotella copri DSM
           18205]
          Length = 290

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARY 249
           N      ++  +L         +L+   G G  +L  ++     V+  +I + SVE A++
Sbjct: 136 NHETTRMIISQLLHMPI-RTKRILDCGTGTGILALTCSKLGAKDVVGYDIDEWSVENAKH 194

Query: 250 NIAANHVNNVKIVRMSS 266
           N   N V N++++  +S
Sbjct: 195 NAVLNGVTNMEVLFGNS 211


>gi|213622795|ref|ZP_03375578.1| hypothetical protein SentesTyp_36933 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 369

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|91794503|ref|YP_564154.1| SAM-dependent methyltransferase [Shewanella denitrificans OS217]
 gi|91716505|gb|ABE56431.1| SAM-dependent methyltransferase [Shewanella denitrificans OS217]
          Length = 411

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +AA       +L  +C  G F L  A+     +  V+++  +++ AR N+A N +++ 
Sbjct: 227 RAIAARFVKGKSVLNCFCYTGTFGLYAAKAGAASIENVDVSALALQTARDNMAINGLDDS 286

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             V     +  + +R+ R+             F  I +DPP+   +     G  + Y  I
Sbjct: 287 H-VNYHEADVFKLLRQYRD---------EGKTFDVIVLDPPKFADNKSQLNGACRGYKDI 336


>gi|117919426|ref|YP_868618.1| SAM-dependent methyltransferase [Shewanella sp. ANA-3]
 gi|224493227|sp|A0KTU3|RLMI_SHESA RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|117611758|gb|ABK47212.1| SAM-dependent methyltransferase [Shewanella sp. ANA-3]
          Length = 396

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 26/157 (16%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +AA       +L  +C  G F L  A      +  V+++  +++ AR N+  N + N 
Sbjct: 212 RAMAARFVKGKSVLNCFCYTGTFGLYAANAGAASIENVDVSALALDTARLNMRVNGL-ND 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             V  +  +  + +R+ R+             F  I +DPP+   +     G  + Y  I
Sbjct: 271 DNVHYNEADVFKLLRQYRD---------EGKTFDVIVLDPPKFADNKSQLNGACRGYKDI 321

Query: 319 LYISCNPDSLCRDLSILSTT-----HTIERLALFDQF 350
             I+         L +L+        +   L   D F
Sbjct: 322 NMIA---------LQLLNPGGVLLTFSCSGLMPADLF 349


>gi|293611268|ref|ZP_06693566.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826519|gb|EFF84886.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325124016|gb|ADY83539.1| 3-demethylubiquinone-9 3-methyltransferase and
           2-octaprenyl-6-hydroxy phenol methylase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 237

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERAGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|158289899|ref|XP_001689406.1| AGAP010425-PA [Anopheles gambiae str. PEST]
 gi|157018380|gb|EDO64279.1| AGAP010425-PA [Anopheles gambiae str. PEST]
          Length = 468

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    +V+A++I    +E A++N A     + ++ +     +   
Sbjct: 313 IIDAFCGCGGNTIQFAFSCQKVIAIDIDPRKIEMAKHNAAVYGVADRIEFIVGDFMQLVD 372

Query: 272 AMRREREF 279
            ++ +  F
Sbjct: 373 RLQADVVF 380


>gi|83746433|ref|ZP_00943485.1| putative methyltransferase [Ralstonia solanacearum UW551]
 gi|207738602|ref|YP_002256995.1| sam-dependent methyltransferases protein [Ralstonia solanacearum
           IPO1609]
 gi|83726974|gb|EAP74100.1| putative methyltransferase [Ralstonia solanacearum UW551]
 gi|206591970|emb|CAQ58876.1| sam-dependent methyltransferases protein [Ralstonia solanacearum
           IPO1609]
          Length = 274

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 9/125 (7%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANH 255
            M ++        Q  LL++  G+G  +L LAR+   RV  V+I    ++ AR       
Sbjct: 49  EMRQFSQWLELSPQSHLLDVCSGSGGPALFLARNSGCRVTGVDIHPDGLQTARQLAQELG 108

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           +            F     R+R        D   +   ++   P R  L      +++  
Sbjct: 109 LQ-------DRSHFVDCDVRQRMPFPDGTFDAL-WCVDSVIHIPDRLALLREWCRLLKPG 160

Query: 316 PHILY 320
              LY
Sbjct: 161 GRFLY 165


>gi|330902934|gb|EGH33877.1| SAM-dependent methyltransferase [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 177

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNN 258
               A       +L+LY   G + +   A     V  V+ +  +++    N A N     
Sbjct: 7   RARIAPYVKGKRVLDLYSYIGGWGIQAAAFGASDVTCVDASSFALDGVERNAALNGFAEK 66

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +                F  LK++     RF  I  DPP                  
Sbjct: 67  MTCIEGDV------------FEALKELKAAEERFDVIVADPPAFIKRKKDMKNGEGAYRR 114

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + ++     ++  SC
Sbjct: 115 LNEQAMRLLSKDGILVSASC 134


>gi|310800315|gb|EFQ35208.1| tRNA wybutosine-synthesizing protein [Glomerella graminicola
           M1.001]
          Length = 416

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   M      A+   +   ++LY G G F+   A+   RVL  E+   SVEA R   
Sbjct: 205 HAVPEAMSHRRRTASSLKKHWAVDLYAGIGYFTFSYAKLGLRVLCWELNPWSVEALRRGA 264

Query: 252 AANHVNNVKIVRMSSKEFTQA 272
            AN    V++V+ +  E   A
Sbjct: 265 VANGWR-VRVVQGADLELPAA 284


>gi|254450580|ref|ZP_05064017.1| methyltransferase small [Octadecabacter antarcticus 238]
 gi|198264986|gb|EDY89256.1| methyltransferase small [Octadecabacter antarcticus 238]
          Length = 253

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 19/111 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARY 249
           AG++  +L   + A  G    +L+L CG G   L LA       +  VE+     +  R 
Sbjct: 28  AGVDPVLLAAAVRAQAGQS--VLDLGCGTGAALLCLATRVSGLALHGVEVQPRYADLCRV 85

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N  AN+++   I     ++                 D+ +  F  + V+PP
Sbjct: 86  NATANNID-TTIWTADLRDL--------------PSDLRALTFDHVMVNPP 121


>gi|206975116|ref|ZP_03236030.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217959580|ref|YP_002338132.1| hypothetical protein BCAH187_A2179 [Bacillus cereus AH187]
 gi|222095722|ref|YP_002529779.1| hypothetical protein BCQ_2062 [Bacillus cereus Q1]
 gi|206746537|gb|EDZ57930.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217067743|gb|ACJ81993.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|221239780|gb|ACM12490.1| conserved hypothetical protein [Bacillus cereus Q1]
          Length = 237

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +LE ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       
Sbjct: 31  LLEKLILQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA-----P 85

Query: 258 NVKIVRMSSKEF 269
           +   +   ++ F
Sbjct: 86  DAAFIVDDARYF 97


>gi|321456618|gb|EFX67720.1| hypothetical protein DAPPUDRAFT_63741 [Daphnia pulex]
          Length = 221

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ +CG G  S+  A   +RV+A++I    +E AR+N +     + ++ +     +   
Sbjct: 68  IVDAFCGAGGNSIQFAFKCERVIAIDIDPSKIELARHNASVYGVADRIEFIVGDFFQLAP 127

Query: 272 AMRREREF 279
           +++ +  F
Sbjct: 128 SLKADVVF 135


>gi|319760482|ref|YP_004124420.1| protein methyltransferase HemK [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318039196|gb|ADV33746.1| protein methyltransferase HemK [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 281

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 21/129 (16%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHF 231
             +L ++     F  P       ++E +L         ++L+L  G G  +L LA  R  
Sbjct: 78  FWSLNFKVSPGVFI-PRPDTEC-LIEQILNLNFNSDNVEILDLGTGVGTIALTLASERPS 135

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             +  +E  K ++  A  N       NV  +  +             F  LK+    S +
Sbjct: 136 WNITGIEQQKQALSLAHKNKLLLDCKNVNFIYGN------------WFKYLKN----SKK 179

Query: 292 FKTIFVDPP 300
           F  I  +PP
Sbjct: 180 FDLIVSNPP 188


>gi|311894402|dbj|BAJ26810.1| putative methyltransferase [Kitasatospora setae KM-6054]
          Length = 236

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           D+L++ CG G+ + +LA    RV  V++A   V+ AR   AA  +   + +   +
Sbjct: 68  DVLDVGCGTGSLARLLAEAGHRVTGVDLAPAMVDLAREKFAAAGLTG-RFLVGDA 121


>gi|311744526|ref|ZP_07718326.1| possible monensin 3-O-methyl transferase MonE [Aeromicrobium
           marinum DSM 15272]
 gi|311312145|gb|EFQ82062.1| possible monensin 3-O-methyl transferase MonE [Aeromicrobium
           marinum DSM 15272]
          Length = 285

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 14/105 (13%)

Query: 165 DYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           D  DE L VA R L  R I+                    A  G    +L++ CG+G  +
Sbjct: 35  DSGDEPLPVATRALTARMIDGG-------------RLADPAPHGGPLRVLDVGCGSGAPA 81

Query: 225 LVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             LA  H   V+ +  +   V  AR   A   ++ V   +    +
Sbjct: 82  CELATDHGVEVVGITTSAVGVATARARAADLGLSGVSFEQRDGTD 126


>gi|270292698|ref|ZP_06198909.1| N5 glutamine methyltransferase, release factor-specific protein
           [Streptococcus sp. M143]
 gi|270278677|gb|EFA24523.1| N5 glutamine methyltransferase, release factor-specific protein
           [Streptococcus sp. M143]
          Length = 278

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 77/200 (38%), Gaps = 44/200 (22%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + + +  ++    +   L A K    +IG+A         D+   +L V  R LI R   
Sbjct: 45  QEVTEEEKQFVEEIFQQLAAHKPAQYIIGQA---------DFFGMQLKVDERVLIPRPE- 94

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKP 242
                        ++E +LA        +L++  G+G  +L LA++     V AV+I++ 
Sbjct: 95  ----------TEELVELILAENSDENLKVLDIGTGSGAIALALAKNRPDWSVTAVDISQD 144

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-- 300
           +++ A  N     V N +I    S  F +                 S ++  I  +PP  
Sbjct: 145 ALDLATENAK---VQNFQIFFKKSDCFAE----------------ISEKYDIIVSNPPYI 185

Query: 301 -RSGLDDATVGMVQAYPHIL 319
            R    +  + ++ + PH+ 
Sbjct: 186 SREDESEVGLNVLHSEPHLA 205


>gi|154491829|ref|ZP_02031455.1| hypothetical protein PARMER_01450 [Parabacteroides merdae ATCC
           43184]
 gi|154088070|gb|EDN87115.1| hypothetical protein PARMER_01450 [Parabacteroides merdae ATCC
           43184]
          Length = 291

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 15/108 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIA 252
              ++E V+      +  +L++  G+G  ++ L +H  +  V+A +I+  ++  AR N  
Sbjct: 105 TEELVEQVILDNADQKIKILDIGTGSGCIAVTLRKHLKKASVIATDISAEALATARRNAK 164

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N+   V  ++    +               ++DI  +    I  +PP
Sbjct: 165 RNN-TTVTFIQTDILD-----------PEKAEMDI-PFILDVIVSNPP 199


>gi|120555271|ref|YP_959622.1| HemK family modification methylase [Marinobacter aquaeolei VT8]
 gi|120325120|gb|ABM19435.1| [protein release factor]-glutamine N5-methyltransferase
           [Marinobacter aquaeolei VT8]
          Length = 285

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 67/169 (39%), Gaps = 16/169 (9%)

Query: 93  TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLI 152
           ++  E LLR    +I   + + D  ++      L   ++R    R      A ++   + 
Sbjct: 7   SLTCEALLREAAGRIGGESPRLDAELLLSHITGLTRTSFRAWPERDVPVEQAERFFELVG 66

Query: 153 GRANKTKICL---DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
            RA+   +     ++++    L V+  TLI R                ++E  L+     
Sbjct: 67  ERASGQPVAYLLGEQEFWSLPLKVSPSTLIPRPG-----------TECVVEAALSLELPA 115

Query: 210 QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +  +L+L  G G  +L LA  +   +V+A +  + +V  AR N  +  +
Sbjct: 116 RASVLDLGTGTGAIALALASEQPGWQVMASDRVEDAVALARENSQSLGL 164


>gi|310823453|ref|YP_003955811.1| hypothetical protein STAUR_6227 [Stigmatella aurantiaca DW4/3-1]
 gi|309396525|gb|ADO73984.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 338

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 28/165 (16%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
           L       +      L L+   G F++  A     R + V+++   ++ A  N+A N + 
Sbjct: 162 LTRARVREEARGKRFLNLFAYTGAFTVYAADGGAARTVTVDLSNTYLDWAEENLALNGLA 221

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT--------- 308
           +             A+ R    + L+       R++ I  DPP                 
Sbjct: 222 HAH----------HALIRADVPSWLEAQGDEPDRYELIVCDPPSFSTSKRMSGSFNVQRD 271

Query: 309 -------VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
                  +  V A   ILY S N      D + +     IE L  
Sbjct: 272 QSRLLRALQTVLAPGGILYFSTNFQGFTLDTASV-RGLEIEELTP 315


>gi|308069949|ref|YP_003871554.1| hypothetical protein PPE_03198 [Paenibacillus polymyxa E681]
 gi|305859228|gb|ADM71016.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 459

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 12/122 (9%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
            V+         +LE +   G+F+L        +V  ++I++ ++E+AR N+  N     
Sbjct: 249 KVVEFPFWDGATVLECFSHTGSFTLNACKHGAKKVTCLDISEHAIESARDNVKLNGFEER 308

Query: 259 VKIVRMSSKEFTQAMRREREFNRL----------KDIDIHSYRFKTIFVDPPRSGLDDAT 308
           V+ V   + ++ +   +  E                       F  + +DPP        
Sbjct: 309 VEFVVDDAFQYLRNQVKGVEERNARAGGKGDTSKPLTAGGGRTFDVVILDPPAFAKTKNA 368

Query: 309 VG 310
           V 
Sbjct: 369 VK 370


>gi|301060380|ref|ZP_07201243.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [delta proteobacterium NaphS2]
 gi|300445576|gb|EFK09478.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [delta proteobacterium NaphS2]
          Length = 299

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 28/158 (17%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDR--V 234
            Q N  +         ++E  +     +  +      L+L  G+G  ++ +A+      V
Sbjct: 89  FQVNPHVLIPRPETEILVEQAMDLATALTEEGTQLRFLDLGTGSGVIAVAMAKQIPESLV 148

Query: 235 LAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDID------I 287
            A +I+  +++ AR N  A+ V +++  ++     F   M  +  F+ +           
Sbjct: 149 FATDISGKALDVARANAQAHGVSSSITFIQGDL--FEPLMLEKPAFHLIASNPPYVCTHE 206

Query: 288 HSYRFKTIFVDPPRSGLD------DATVGMVQAYPHIL 319
            S     I +  PR+ LD      D    +++  P  L
Sbjct: 207 ISGLQSEIALYEPRAALDGGKDGMDYLKEIIKQAPRFL 244


>gi|296168231|ref|ZP_06850204.1| thiopurine S-methyltransferase family protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896803|gb|EFG76434.1| thiopurine S-methyltransferase family protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 246

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A  GI+G++L+   G G  ++  A        ++ +  ++E A+ N     V  V   
Sbjct: 37  LVAYGGIRGEVLDPGTGPGYHAIHFAAQGYSATGIDDSPSAIERAKRNAERAGVE-VDFQ 95

Query: 263 RMSSKEF 269
              +   
Sbjct: 96  VADATRL 102


>gi|294782569|ref|ZP_06747895.1| methyltransferase [Fusobacterium sp. 1_1_41FAA]
 gi|294481210|gb|EFG28985.1| methyltransferase [Fusobacterium sp. 1_1_41FAA]
          Length = 382

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 19/109 (17%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNI 251
              ++E  +   + I+  ++L++  G+G  S+ +A       V  V+I + ++E A  N 
Sbjct: 180 TEILVEQCIQLMREIEEPNILDIGSGSGAISIAIANELKSSSVTGVDINEDAIELANENK 239

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             N V NV  ++               F +L +     +++  I  +PP
Sbjct: 240 VLNKVENVNFMKSD------------LFEKLDE----DFKYDLIVSNPP 272


>gi|315506349|ref|YP_004085236.1| methyltransferase type 12 [Micromonospora sp. L5]
 gi|315412968|gb|ADU11085.1| Methyltransferase type 12 [Micromonospora sp. L5]
          Length = 201

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 12/118 (10%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +L A       +L+  CG G  +  LA     V+ V+     VEAAR           
Sbjct: 37  ARLLDALVPPGARVLDAGCGTGRVAAALAARGHNVVGVDADPTLVEAARA-----DHPGP 91

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           + +     E   A + E E       D        +    P  G +   +  V A+  
Sbjct: 92  RFLVADLAELDLAAQGEAE-----PFDAAVLAGNVMVFVAP--GTERDVLARVAAHVR 142


>gi|238023184|ref|ZP_04603610.1| hypothetical protein GCWU000324_03110 [Kingella oralis ATCC 51147]
 gi|237865567|gb|EEP66707.1| hypothetical protein GCWU000324_03110 [Kingella oralis ATCC 51147]
          Length = 237

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 8/136 (5%)

Query: 169 ERLTVAGRTL-IYRQIENSF------TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           E + V    +  + QI + +       +P   IN   L+++          +L++ CG G
Sbjct: 4   ETINVDPNEIAKFSQIADKWWDKTGEFKPLHDINPLRLDYIDQHAHLAGKTVLDVGCGGG 63

Query: 222 NFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
             S  +AR     VL V++A+ S++ A+ +  A  V NV    +S ++    M +  +  
Sbjct: 64  ILSESMARRGAASVLGVDMAELSLQTAQAHADAGRVANVAYRCVSVEDLAAEMPQAFDVV 123

Query: 281 RLKDIDIHSYRFKTIF 296
              ++  H     +I 
Sbjct: 124 TCMEMLEHVPDPASII 139


>gi|57641798|ref|YP_184276.1| N6-adenine-specific DNA methylase [Thermococcus kodakarensis KOD1]
 gi|57160122|dbj|BAD86052.1| predicted N6-adenine-specific DNA methylase [Thermococcus
           kodakarensis KOD1]
          Length = 365

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
           A I   ++E      +   G  ++ +CG+G   + LA      R++ +E  +  +  A  
Sbjct: 204 ASIANALIELA----EPNGGSFIDPFCGSGTILIELALRGYKGRIIGLEKYRKHIRGAEM 259

Query: 250 NIAANH-VNNVKIVRMSSKEFTQ 271
           N  +   ++ ++ ++  + + +Q
Sbjct: 260 NALSAGVLDKIEFIQGDATKLSQ 282


>gi|330466638|ref|YP_004404381.1| type 11 methyltransferase [Verrucosispora maris AB-18-032]
 gi|328809609|gb|AEB43781.1| methyltransferase type 11 [Verrucosispora maris AB-18-032]
          Length = 260

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   ++E   A   G     ++L CG G  SL LA     V+ V+     +  AR+  
Sbjct: 22  PEVLDALVE---AFDLGPDDTAVDLGCGTGQLSLPLAARVGTVIGVDPEPDMLALARHAA 78

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                 N   +     +     R       L D  I +           R  L      +
Sbjct: 79  LNAARPNTMWLLGDDSDLPTLGR------LLGDRTIGALTVAVAIHFMDRDALFRTVRPL 132

Query: 312 VQAYPHILYI 321
           ++    I  I
Sbjct: 133 LRPGGGIAVI 142


>gi|315426169|dbj|BAJ47813.1| methyltransferase [Candidatus Caldiarchaeum subterraneum]
          Length = 318

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVN-NV 259
           +AA  G    +L+++ G G FS+++AR      + AVE    +      NI  N V   V
Sbjct: 163 VAAQVGENETVLDMFAGVGPFSILIARKHPSTTIYAVEKNPAACSYLLENIKLNKVEKQV 222

Query: 260 KIVRMSSKEFTQAMRRE 276
           K     + E    + ++
Sbjct: 223 KPFCGDAAEIVPQLDKQ 239


>gi|311103756|ref|YP_003976609.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310758445|gb|ADP13894.1| ubiE/COQ5 methyltransferase family protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 256

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +L+    A +  +  LL+L CG G+ S  +A H   V A ++++  ++      
Sbjct: 27  HAQGEDLLQMAGIAAQHPEARLLDLGCGGGHVSFHVAPHVKHVTAYDLSQQMLDVVAGEA 86

Query: 252 AANHVNNVKIVRMSSK 267
           A   + N+   +  ++
Sbjct: 87  AKRGLANLATCQGKAE 102


>gi|302389475|ref|YP_003825296.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200103|gb|ADL07673.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Thermosediminibacter oceani DSM 16646]
          Length = 314

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M   +L         ++++ CG+G  S+  A+    +VLA++  + +V+ AR NI  
Sbjct: 158 TTAMCLELLEKYIEGGETVIDVGCGSGILSIAAAKLGAGKVLAIDKDEVAVKVARENIKR 217

Query: 254 NHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           N     V++++    +   A       N + D+ I 
Sbjct: 218 NDTTQAVEVIKGEGLDCVDAKADIIVANIIADVIID 253


>gi|229588284|ref|YP_002870403.1| protein methyltransferase [Pseudomonas fluorescens SBW25]
 gi|229360150|emb|CAY47007.1| protein methyltransferase [Pseudomonas fluorescens SBW25]
          Length = 276

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 19/102 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                 +L+L  G+G  +L LA  R   +V AV+    +V  A  N    H+NNV +   
Sbjct: 106 PATPAKVLDLGTGSGAIALALASERPAWQVTAVDRVLEAVALAERNRQRLHLNNVTV--- 162

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                          N      +  + +  I  +PP    +D
Sbjct: 163 --------------LNSHWFSALPGHTYDLIISNPPYIAAND 190


>gi|29833105|ref|NP_827739.1| hypothetical protein SAV_6563 [Streptomyces avermitilis MA-4680]
 gi|29610227|dbj|BAC74274.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 215

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A +       +     G   D+L+L CG G+ SL+ A    RV  V+++   V  AR   
Sbjct: 44  AVVREAWAARLRDWLPGKACDVLDLGCGTGSLSLLAAERGHRVTGVDLSPAMVGLAR--A 101

Query: 252 AANHVNNVKIVRMSSK 267
                 +   +   + 
Sbjct: 102 KTAG-RDAAFLVGDAA 116


>gi|16262543|ref|NP_435336.1| putative methyltransferase [Sinorhizobium meliloti 1021]
 gi|307300711|ref|ZP_07580486.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
 gi|14523153|gb|AAK64748.1| putative methyltransferase [Sinorhizobium meliloti 1021]
 gi|306904245|gb|EFN34830.1| Methyltransferase type 11 [Sinorhizobium meliloti BL225C]
          Length = 261

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
           A +  H  +  +AA  G    +L++ CG G  +   AR       + V+I+   +E AR 
Sbjct: 11  AELARHNRQLRVAADFGADDRVLDIGCGAGQTTREAARAAPQGEAIGVDISAEMLEEARR 70

Query: 250 NIAANHVNNVKIVRMSS 266
             AA  + N    +  +
Sbjct: 71  RSAAEGLRNAMFEQGDA 87


>gi|34557400|ref|NP_907215.1| hypothetical protein WS1013 [Wolinella succinogenes DSM 1740]
 gi|34483116|emb|CAE10115.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 267

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           LL++ CG G F+L  A    +V A++ +   +E   +N     ++N+  + +  +E
Sbjct: 64  LLDVGCGPGTFALRFAPRLKQVYALDYSPKMLEVLEHNAQKRAISNICPLCLDLEE 119


>gi|116624352|ref|YP_826508.1| transcriptional regulator [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227514|gb|ABJ86223.1| transcriptional regulator [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 304

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 1/105 (0%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L  G G  S ++A+   RV+A++ ++  VE        + + N++      ++    
Sbjct: 145 IADLGAGEGTISQLMAQRAKRVIAIDNSEKMVEFGAELARKHGIANLEYRLGDLEDV-PI 203

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                +   L     H+   +    +  R       + ++    H
Sbjct: 204 RTGTVDLAFLSQALHHAVHPERAIAEASRILKKGGRIAILDLSRH 248


>gi|294340978|emb|CAZ89373.1| putative Ribosomal protein L11 methyltransferase (L11 Mtase) (prmA)
           [Thiomonas sp. 3As]
          Length = 298

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW LA     Q  +L+  CG+G  ++  A+     V+ V+I   +V A   N AAN V 
Sbjct: 156 LEW-LARQTPSQLSVLDYGCGSGILAIAAAKFGAGPVVGVDIDPDAVLATEANAAANDVT 214


>gi|294618341|ref|ZP_06697922.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1679]
 gi|291595435|gb|EFF26747.1| methyltransferase small domain superfamily [Enterococcus faecium
           E1679]
          Length = 210

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 18/120 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
             +++         +G +L++ CG G   L LA    R V  V+I + +V  A+ N   N
Sbjct: 56  RVLIDAFDWEELPDEGKILDVGCGYGPIGLALAFATQRFVEMVDINERAVSLAQGNAKRN 115

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + +V I + +  E                  +H   +  I  +PP          ++  
Sbjct: 116 QIEHVDIHQSNIYE-----------------AVHEETYAAIVSNPPIRAGKKVVHEILTG 158


>gi|268595711|ref|ZP_06129878.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268549100|gb|EEZ44518.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|317165196|gb|ADV08737.1| HemK [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 295

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 84/232 (36%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 60  EEMPDEIRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPNVLIPRPE----- 109

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 110 ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISTPALET 162

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  ER++               I  +PP   +G 
Sbjct: 163 ARKNAADLGAR-VEFAHGS--WFDTDMPSERQW-------------DIIVSNPPYIENGD 206

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 207 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 257


>gi|228991705|ref|ZP_04151645.1| Methyltransferase type 11 [Bacillus pseudomycoides DSM 12442]
 gi|228997806|ref|ZP_04157410.1| Methyltransferase type 11 [Bacillus mycoides Rock3-17]
 gi|229005345|ref|ZP_04163059.1| Methyltransferase type 11 [Bacillus mycoides Rock1-4]
 gi|228755875|gb|EEM05206.1| Methyltransferase type 11 [Bacillus mycoides Rock1-4]
 gi|228761938|gb|EEM10880.1| Methyltransferase type 11 [Bacillus mycoides Rock3-17]
 gi|228768028|gb|EEM16651.1| Methyltransferase type 11 [Bacillus pseudomycoides DSM 12442]
          Length = 264

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F  V+A+++ +  +E 
Sbjct: 22  VNSQIHAKGPDLQYVVQQVKNRKNIRLLDIATGGGHVANLLAPIFKEVVALDLTEKMLEK 81

Query: 247 ARYNIAANHVNNVKIVRMSSKEF 269
           A+  I  N   NV  V  ++++ 
Sbjct: 82  AKAFIQTNGHENVSFVVGNAEDL 104


>gi|224493313|sp|Q12JE5|RLMI_SHEDO RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
          Length = 397

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +AA       +L  +C  G F L  A+     +  V+++  +++ AR N+A N +++ 
Sbjct: 213 RAIAARFVKGKSVLNCFCYTGTFGLYAAKAGAASIENVDVSALALQTARDNMAINGLDDS 272

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             V     +  + +R+ R+             F  I +DPP+   +     G  + Y  I
Sbjct: 273 H-VNYHEADVFKLLRQYRD---------EGKTFDVIVLDPPKFADNKSQLNGACRGYKDI 322


>gi|126725275|ref|ZP_01741117.1| Predicted SAM-dependent methyltransferase [Rhodobacterales
           bacterium HTCC2150]
 gi|126704479|gb|EBA03570.1| Predicted SAM-dependent methyltransferase [Rhodobacterales
           bacterium HTCC2150]
          Length = 398

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             AA       +L+++   G FSL  LA      LAV+ +  ++  A+    A+ V +  
Sbjct: 215 AFAAGLSKDVRVLDVFSHVGGFSLAALANGAKSALAVDGSTAALALAQEGAEASGVADRF 274

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
             R S             F+ L  +      F+ +  DPP    +       ++AY  + 
Sbjct: 275 ETRCS-----------DAFDALTALAAEGQEFEVVICDPPAFAPNKKAAEAGLRAYEKVA 323


>gi|297182949|gb|ADI19097.1| methylase of polypeptide chain release factors [uncultured alpha
           proteobacterium HF0070_34A12]
          Length = 247

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 19/106 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANH 255
           +   + A   G    +L+L CG G   L     R       V+IA  +VE A  N   N 
Sbjct: 106 VAAALAATDPGKPCRMLDLGCGTGALLLACLSERPDATGTGVDIAGEAVEVATRNAGKNG 165

Query: 256 V-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +      V                     D D+    +  I  +PP
Sbjct: 166 LSARADFVIGD----------------FSDPDVAPGIYDLILCNPP 195


>gi|299144281|ref|ZP_07037361.1| methyltransferase domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518766|gb|EFI42505.1| methyltransferase domain protein [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 264

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 18/152 (11%)

Query: 211 GDLLELYCGNGNFSLVLARH---FDRV----LAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           G  L++ CG+G  ++  A+       V       E    S    R N  A  +NNV+ V+
Sbjct: 98  GKGLDVGCGSGALTIACAKRNLNSKMVGLDRWGKEYKNYSRALCRKNAEAEGINNVEFVK 157

Query: 264 MSSKEF-TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
             + +        +   +     +I  Y  + +  +  R      T  +      ++Y  
Sbjct: 158 GDALKLDFPDETFDVVTSNYVYHNIKGYSHQELLKETLRVLKKGGTFAIHDIMSKMIYG- 216

Query: 323 CNPDSLCRDLSILSTTHTIERLALFD----QF 350
            + +    +L      +  ER+ L D     F
Sbjct: 217 -DMNKFMEELKR--EGY--ERVELIDTTNGMF 243


>gi|255066163|ref|ZP_05318018.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria sicca ATCC
           29256]
 gi|255049708|gb|EET45172.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria sicca ATCC
           29256]
          Length = 239

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYN 250
             IN   L ++ +  +     +L++ CG G  S  +A R    V  +++A+ S+E A+ +
Sbjct: 36  HDINPLRLGYIDSFAQLAGKRVLDVGCGGGILSESMATRGAAHVTGIDMAEKSLETAQAH 95

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            AA  V+N+    +  ++         +     ++  H      I 
Sbjct: 96  AAAEGVDNIDYRCIRVEDLAAEQPHSFDVVTCMEMMEHVPDPAAIV 141


>gi|194099711|ref|YP_002002846.1| HemK [Neisseria gonorrhoeae NCCP11945]
 gi|254492740|ref|ZP_05105911.1| hemK protein [Neisseria gonorrhoeae 1291]
 gi|268597897|ref|ZP_06132064.1| hemK protein [Neisseria gonorrhoeae FA19]
 gi|268600147|ref|ZP_06134314.1| hemK protein [Neisseria gonorrhoeae MS11]
 gi|268602560|ref|ZP_06136727.1| hemK protein [Neisseria gonorrhoeae PID1]
 gi|268681109|ref|ZP_06147971.1| hemK protein [Neisseria gonorrhoeae PID332]
 gi|268685212|ref|ZP_06152074.1| hemK protein [Neisseria gonorrhoeae SK-92-679]
 gi|268685589|ref|ZP_06152451.1| hemK protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291044872|ref|ZP_06570581.1| protein methyltransferase hemK [Neisseria gonorrhoeae DGI2]
 gi|293397950|ref|ZP_06642156.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria gonorrhoeae F62]
 gi|193935001|gb|ACF30825.1| HemK [Neisseria gonorrhoeae NCCP11945]
 gi|226511780|gb|EEH61125.1| hemK protein [Neisseria gonorrhoeae 1291]
 gi|268551685|gb|EEZ46704.1| hemK protein [Neisseria gonorrhoeae FA19]
 gi|268584278|gb|EEZ48954.1| hemK protein [Neisseria gonorrhoeae MS11]
 gi|268586691|gb|EEZ51367.1| hemK protein [Neisseria gonorrhoeae PID1]
 gi|268621393|gb|EEZ53793.1| hemK protein [Neisseria gonorrhoeae PID332]
 gi|268625496|gb|EEZ57896.1| hemK protein [Neisseria gonorrhoeae SK-92-679]
 gi|268625873|gb|EEZ58273.1| hemK protein [Neisseria gonorrhoeae SK-93-1035]
 gi|291011766|gb|EFE03762.1| protein methyltransferase hemK [Neisseria gonorrhoeae DGI2]
 gi|291611896|gb|EFF40965.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria gonorrhoeae F62]
          Length = 295

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 84/232 (36%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 60  EEMPDEIRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPNVLIPRPE----- 109

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 110 ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISTPALET 162

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  ER++               I  +PP   +G 
Sbjct: 163 ARKNAADLGAR-VEFAHGS--WFDTDMPSERQW-------------DIIVSNPPYIENGD 206

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 207 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 257


>gi|290956265|ref|YP_003487447.1| hypothetical protein SCAB_17521 [Streptomyces scabiei 87.22]
 gi|260645791|emb|CBG68882.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 241

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++L CGNG  +  LA  F RV+ V+++  +V+ AR    A+         + + + TQ 
Sbjct: 53  LVDLGCGNGTQTRYLADRFSRVIGVDLSAAAVDLARR---ADPDGRADYRALDAADGTQT 109

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
              E     L D +++            R    D    ++     +  +
Sbjct: 110 ---EALHADLGDANVYVRGVLHQCEPDDRQRFADTVATLLGERGRVCLV 155


>gi|225351438|ref|ZP_03742461.1| hypothetical protein BIFPSEUDO_03033 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157782|gb|EEG71065.1| hypothetical protein BIFPSEUDO_03033 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 247

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A     +G  L+L CG G  +L L  A     + A+++ + +++  R N   N V NV  
Sbjct: 99  APEPPEEGTFLDLGCGWGPIALTLGFASPKADIWALDVNERALDLTRRNAELNGVRNVHA 158

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
           V     E    M                  F  I+ +PP R G D     ++   P +
Sbjct: 159 VTAD--EIPSDM-----------------TFDLIWSNPPIRVGKDVLHELLMTWLPRL 197


>gi|167720829|ref|ZP_02404065.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei DM98]
 gi|237813467|ref|YP_002897918.1| protein-L-isoaspartate [Burkholderia pseudomallei MSHR346]
 gi|237504673|gb|ACQ96991.1| protein-L-isoaspartate [Burkholderia pseudomallei MSHR346]
          Length = 217

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++LE+  G G  + +LA    RV  VEI     + A  N+
Sbjct: 63  PRVEARILQELAVKKHE---NVLEIGAGCGYMAALLAARGQRVTTVEIDPDLAKFAEENL 119

Query: 252 AANHVNNVKIVRMS 265
             N V N ++V   
Sbjct: 120 KKNGVTNAEVVLGD 133


>gi|150401405|ref|YP_001325171.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus aeolicus Nankai-3]
 gi|150014108|gb|ABR56559.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus aeolicus Nankai-3]
          Length = 187

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 34/67 (50%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++ CG+G  ++ +A+    V A++ +  ++   + N+   ++ N +I+   ++     
Sbjct: 43  VVDIGCGSGGMTVEIAKRCKFVYAIDGSDNAINTTKKNLERFNIKNCEIINEDAENILLN 102

Query: 273 MRREREF 279
           +   + F
Sbjct: 103 LDFNKAF 109


>gi|94309168|ref|YP_582378.1| SAM-dependent methyltransferase [Cupriavidus metallidurans CH34]
 gi|93353020|gb|ABF07109.1| putative SAM-dependent methyltransferase [Cupriavidus metallidurans
           CH34]
          Length = 397

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++L  +C  G FSL  L      V +++ +  +++ A  N+  N  +  +   + +    
Sbjct: 224 EVLNCFCYTGGFSLAALRGGATSVTSIDSSGEALKIAASNVTLNGFDPARATWLDA---- 279

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
                   F  L++      +F  I +DPP+       +    +AY  I
Sbjct: 280 ------DVFKTLREFRAEGRQFDLIVLDPPKFAPSAQHIDRAARAYKEI 322


>gi|299536742|ref|ZP_07050052.1| hypothetical protein BFZC1_12007 [Lysinibacillus fusiformis ZC1]
 gi|298727856|gb|EFI68421.1| hypothetical protein BFZC1_12007 [Lysinibacillus fusiformis ZC1]
          Length = 249

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 16/112 (14%)

Query: 210 QGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSK 267
           +G +++L  GNG   L L AR   ++  VEI     E A  +I  N +   ++++    K
Sbjct: 47  KGKIVDLCSGNGVIPLFLSARTKGQITGVEIQPRLFEMAERSIRYNQLEQQIQMILGDVK 106

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           E  + +  E              ++  +  +PP     +A+   +  +  I 
Sbjct: 107 EIPKQLGIE--------------KYDVVTCNPPYFLAHEASDKNLSEHHAIA 144


>gi|289643146|ref|ZP_06475275.1| methyltransferase [Frankia symbiont of Datisca glomerata]
 gi|289507038|gb|EFD28008.1| methyltransferase [Frankia symbiont of Datisca glomerata]
          Length = 185

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 215 ELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           +LY G+G   L  L+R    VL V+ +  +V   R N AA     V+I+  S +   + M
Sbjct: 50  DLYAGSGAVGLEALSRGASHVLFVDRSAAAVRTLRANAAALGFTGVEILFRSVQRVVEIM 109

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                             F  +F+DPP +  D A   ++  
Sbjct: 110 PERA--------------FDVVFLDPPYALSDSALTSVLAG 136


>gi|167924611|ref|ZP_02511702.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei BCC215]
          Length = 217

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++LE+  G G  + +LA    RV  VEI     + A  N+
Sbjct: 63  PRVEARILQELAVKKHE---NVLEIGAGCGYMAALLAARGQRVTTVEIDPDLAKFAEENL 119

Query: 252 AANHVNNVKIVRMS 265
             N V N ++V   
Sbjct: 120 KKNGVTNAEVVLGD 133


>gi|261885016|ref|ZP_06009055.1| tRNA (uracil-5-)-methyltransferase [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 36

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 26/34 (76%)

Query: 331 DLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           +L +L  TH++++ A+FDQF +T H+EC V+L +
Sbjct: 2   NLKLLCKTHSVDKFAIFDQFVHTNHIECAVVLKK 35


>gi|261332363|emb|CBH15358.1| arginine N-methyltransferase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 389

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
            E VL + KG    +L L CG G  S++ AR     V+AV+ +   V+AA+     N +N
Sbjct: 88  YESVLRSIKGKS--VLHLGCGMGLVSMIAARSLASAVVAVDRSAI-VDAAQVVAKKNGLN 144

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           N+   R +  +  Q         R  D+ I  +    +  DP
Sbjct: 145 NISFFRGALVDVVQNFPV-----RQFDVIICEWMGPFLINDP 181


>gi|239628685|ref|ZP_04671716.1| modification methylase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518831|gb|EEQ58697.1| modification methylase [Clostridiales bacterium 1_7_47FAA]
          Length = 328

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 22/140 (15%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGN 222
           ER+ +   T +   +   F   N  +         ++E VL   KG    LL++  G+G 
Sbjct: 104 ERIPLQHLTGVQEFMGFEFY-VNEHVLIPRQDTETLVELVLKEQKGKDAALLDVCTGSGC 162

Query: 223 FSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
            ++ LA    +  V A+++++ ++  A  N             +   E    +     F 
Sbjct: 163 IAISLALMGGYRDVTALDVSREALAVAARNAQRL---------LKEHEGEFNLIESDMFE 213

Query: 281 RLKDIDIHSYRFKTIFVDPP 300
           RL+       R+  I  +PP
Sbjct: 214 RLE----PDRRYDIIVSNPP 229


>gi|71747100|ref|XP_822605.1| arginine N-methyltransferase [Trypanosoma brucei TREU927]
 gi|70832273|gb|EAN77777.1| arginine N-methyltransferase, putative [Trypanosoma brucei]
          Length = 434

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
            E VL + KG    +L L CG G  S++ AR     V+AV+ +   V+AA+     N +N
Sbjct: 133 YESVLRSIKGKS--VLHLGCGMGLVSMIAARSLASAVVAVDRSAI-VDAAQVVAKKNGLN 189

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           N+   R +  +  Q         R  D+ I  +    +  DP
Sbjct: 190 NISFFRGALVDVVQNFPV-----RQFDVIICEWMGPFLINDP 226


>gi|332970820|gb|EGK09799.1| protein-(glutamine-N5) methyltransferase [Psychrobacter sp.
           1501(2011)]
          Length = 300

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 28/138 (20%)

Query: 196 VHMLEWVLAATKGIQ----------GDLLELYCGNGNFSLVLA-------RHFDRVLAVE 238
             +L+W+      +             LL+L  G+G  ++ LA           +V A++
Sbjct: 101 EQVLDWITQHKNSLSVLNDEPILAPYQLLDLGTGSGCIAISLAHELATIYPKQWQVTALD 160

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            +  ++  A+ N   N V+N++ ++    ++  A++R          D     F  I  +
Sbjct: 161 FSTEALAVAKRNAQLNAVSNIQFLQ---SDWFSALKRSE--------DTDQPLFDIIVSN 209

Query: 299 PPRSGLDDATVGMVQAYP 316
           PP    +D  +  ++A P
Sbjct: 210 PPYIVDNDQHLDKLKAEP 227


>gi|303240975|ref|ZP_07327485.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2]
 gi|302591400|gb|EFL61138.1| Methyltransferase type 11 [Acetivibrio cellulolyticus CD2]
          Length = 377

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
               V  L  +     G    +L+  CG G  S +LA+   +V  +++++  ++ A    
Sbjct: 148 TEQEVEFLNNIFLDHYGKTEKVLDCCCGIGRHSALLAKKGYQVTGIDVSQNQIKNANR-- 205

Query: 252 AANHVNNVKIVRMSSKEFT 270
             N    +  +    ++F 
Sbjct: 206 -FNSHMKINYINGDVRDFA 223


>gi|159040434|ref|YP_001539687.1| methyltransferase type 11 [Salinispora arenicola CNS-205]
 gi|157919269|gb|ABW00697.1| Methyltransferase type 11 [Salinispora arenicola CNS-205]
          Length = 246

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                +L+L CG G +   LAR   +V  V+++   +E A+     +    V++VR    
Sbjct: 39  PTGSRVLDLCCGPGIYLEPLARRGHQVTGVDLSPAMLERAQEVCKESDPP-VELVRGDMG 97

Query: 268 EFTQAMRREREFN 280
           EF +    +   N
Sbjct: 98  EFVRPGAFDVALN 110


>gi|115372746|ref|ZP_01460052.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370227|gb|EAU69156.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 327

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 28/165 (16%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
           L       +      L L+   G F++  A     R + V+++   ++ A  N+A N + 
Sbjct: 151 LTRARVREEARGKRFLNLFAYTGAFTVYAADGGAARTVTVDLSNTYLDWAEENLALNGLA 210

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT--------- 308
           +             A+ R    + L+       R++ I  DPP                 
Sbjct: 211 HAH----------HALIRADVPSWLEAQGDEPDRYELIVCDPPSFSTSKRMSGSFNVQRD 260

Query: 309 -------VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
                  +  V A   ILY S N      D + +     IE L  
Sbjct: 261 QSRLLRALQTVLAPGGILYFSTNFQGFTLDTASV-RGLEIEELTP 304


>gi|32140301|gb|AAP69591.1| hypothetical protein [Streptomyces griseoflavus]
          Length = 247

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             +    G +G +L+L CG G+ +L LA    RV AV+I++ +V+  R     + V+ V 
Sbjct: 37  RAICDRGGFRGHVLDLGCGLGDNALYLASRGLRVSAVDISEVAVQCGRDKARDHGVS-VD 95

Query: 261 IVRMSSKEFTQAMRR 275
                +    ++  R
Sbjct: 96  FQVTDAFRLAESGVR 110


>gi|20094376|ref|NP_614223.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
 gi|19887444|gb|AAM02153.1| Predicted SAM-dependent methyltransferase [Methanopyrus kandleri
           AV19]
          Length = 276

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           + +++ G G F+L  A     V+A E+   +      N   N V   V++     +E  +
Sbjct: 127 VFDMFAGIGYFTLPAALAGAEVIAAELNPVACRYLVENARLNGVEGRVRVFLGDCREVAR 186

Query: 272 AMRRER 277
            +R   
Sbjct: 187 FVRAAD 192


>gi|323144315|ref|ZP_08078930.1| (glutamine-N5) methyltransferase, ribosomal protein L3-specific
           [Succinatimonas hippei YIT 12066]
 gi|322415906|gb|EFY06625.1| (glutamine-N5) methyltransferase, ribosomal protein L3-specific
           [Succinatimonas hippei YIT 12066]
          Length = 333

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 86/247 (34%), Gaps = 50/247 (20%)

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQ-------AIVTLIYHR 125
           +D       + NAL+ E+         L +     +                IV  + H 
Sbjct: 18  LDTPPSAQEIENALIQELRTVQDAVRYLVSCFAAHEIYCGHGTDNYWDEALEIVQAVMHL 77

Query: 126 L-------LDDAWRECAIRLRDALHARKYQIQLIGRA--NKTKICLDRDYVDERLTVAGR 176
                   L+    E   ++  A+  ++  +++      ++   C  + YVD+R+ V  R
Sbjct: 78  QPPCDDSTLNSRLTEKERKIIAAIANKRIFLRVPTPYLTHRAFFCGHQFYVDKRVIV-PR 136

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---R 233
           + I   IEN F                         +L++  G+G  ++ +A HFD    
Sbjct: 137 SPIAELIENGF---------------DPFIDRTPDRVLDMCTGSGCIAIAIALHFDGDCE 181

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V AV+I++ ++E A  NI    + N                +   F+ L   D    ++ 
Sbjct: 182 VDAVDISEEALEVAEINIRGYGLENCVF-----------PIKSDLFSALPKGD----KYD 226

Query: 294 TIFVDPP 300
            I  +PP
Sbjct: 227 LIVANPP 233


>gi|315645966|ref|ZP_07899087.1| PUA domain containing protein [Paenibacillus vortex V453]
 gi|315278727|gb|EFU42041.1| PUA domain containing protein [Paenibacillus vortex V453]
          Length = 457

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 15/123 (12%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +LE +   G+F+L   +    +V  ++I++ ++++AR N+  N   + V+ V   + +
Sbjct: 255 ATVLECFSHTGSFTLHACQYGAKKVTCLDISEHAIDSARENVELNGFQDRVEFVVDDAFQ 314

Query: 269 FTQAMRR---EREFNRLKDIDIHSYRF---------KTIFVDPPRSGL-DDATVGMVQAY 315
           + +   +   ERE     D  + + +            + +DPP       A  G  + Y
Sbjct: 315 YLRNQVKGLDEREQRAKGDQKVDTSKPLTAGGGRSWDVVILDPPAFAKTKSAVKGACRGY 374

Query: 316 PHI 318
             I
Sbjct: 375 KDI 377


>gi|294085493|ref|YP_003552253.1| 3-demethylubiquinone-9 3-methyltransferase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665068|gb|ADE40169.1| 3-demethylubiquinone-9 3-methyltransferase protein [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 247

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG G  +  +AR    V  +++  P+++AAR +  A+ ++ +     S+++   
Sbjct: 62  RILDIGCGGGLLAEPMARLGGIVTGIDVTSPAIDAARTHAKASGLD-ITYHCQSAEDLAA 120

Query: 272 A 272
           +
Sbjct: 121 S 121


>gi|302524893|ref|ZP_07277235.1| thioredoxin-disulfide reductase [Streptomyces sp. AA4]
 gi|302433788|gb|EFL05604.1| thioredoxin-disulfide reductase [Streptomyces sp. AA4]
          Length = 531

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 16/114 (14%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVK 260
           V  A     G  L+  CG G  +L LA+   RV AV+ +  ++E  R   A   + + + 
Sbjct: 361 VTEARDLEPGHALDAGCGEGGDALWLAQQGWRVTAVDFSTTAIERGRAQAAKLGLADRIT 420

Query: 261 IVRMSSKEFT---------------QAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            V     E+                 +  R   F RL D          +  DP
Sbjct: 421 WVAADLAEWLPESKFDLVTTHFLHVPSAARTAAFARLADAVAPGGTLLVVGHDP 474


>gi|255532070|ref|YP_003092442.1| modification methylase, HemK family [Pedobacter heparinus DSM 2366]
 gi|255345054|gb|ACU04380.1| modification methylase, HemK family [Pedobacter heparinus DSM 2366]
          Length = 288

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 25/120 (20%)

Query: 195 NVHMLEW-----VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
              ++ W      L A  G    L+++  G+G  ++ L ++F    V A+++++ +++ A
Sbjct: 98  TEELVAWVLESTALEAVTGAALRLIDIGTGSGCIAISLKKNFPEAEVSALDVSEAAIDIA 157

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N   N V+ +K ++   +EFT                    +F  +  +PP   L + 
Sbjct: 158 GSNALLNEVD-IKFIQADIREFTTKQ-----------------KFDVVVSNPPYITLKEK 199


>gi|124268426|ref|YP_001022430.1| SAM-dependent methyltransferase [Methylibium petroleiphilum PM1]
 gi|124261201|gb|ABM96195.1| SAM-dependent methyltransferase [Methylibium petroleiphilum PM1]
          Length = 397

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  Y   G FS+  LA    +V++V+ + P++  A  ++  N  +  +   + + +  
Sbjct: 224 RVLNCYSYTGGFSVAALAGGAQQVISVDSSGPALARASEHVQLNGFDAARHEALDA-DVN 282

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
             +RR  E             F  I +DPP+  
Sbjct: 283 GTLRRHLEL---------GASFDAIVLDPPKFA 306


>gi|329947046|ref|ZP_08294458.1| RNA methyltransferase, RsmD family [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328526857|gb|EGF53870.1| RNA methyltransferase, RsmD family [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 196

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 15/121 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +   +          +L+L  G+G   L   +R  D V+ V+ ++ + +  R NI 
Sbjct: 28  VREALFARLDHYGVLDGARVLDLCAGSGALGLEAASRGADDVMLVDFSRAATDTCRRNIR 87

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              ++ V  V   +  F                         + +DPP    ++    ++
Sbjct: 88  VLGLDGVHAVTAKADAFLT--------------GAAGAPVDLVLIDPPYDLSEEELTAIL 133

Query: 313 Q 313
            
Sbjct: 134 S 134


>gi|283458471|ref|YP_003363097.1| 16S RNA G1207 methylase RsmC [Rothia mucilaginosa DY-18]
 gi|283134512|dbj|BAI65277.1| 16S RNA G1207 methylase RsmC [Rothia mucilaginosa DY-18]
          Length = 207

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 22/121 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +  A       +L++ CG G  +L LA      +V AV++   S+     N AA  ++NV
Sbjct: 51  LQEAPDPQGTRMLDIGCGWGPITLTLAMLAPQAQVHAVDVNSRSIGLTERNAAALGLSNV 110

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
            +    S +                      RF TI+ +PP R G +     ++   P +
Sbjct: 111 TVGTPESVD-------------------PELRFDTIWSNPPIRVGKEVLHEILLTWLPRL 151

Query: 319 L 319
            
Sbjct: 152 A 152


>gi|283456414|ref|YP_003360978.1| 16S RNA methylase [Bifidobacterium dentium Bd1]
 gi|283103048|gb|ADB10154.1| 16S RNA methylase [Bifidobacterium dentium Bd1]
          Length = 207

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 21/111 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +G  L+L CG G  +L +A       V A+++ + ++E  + N   N +  +  V  
Sbjct: 62  PAQEGTFLDLGCGWGPIALTMALESPKADVWALDVNERALELTKRNAEINGIGTIHAVTA 121

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                              D   H   F  I+ +PP     +A   ++ A+
Sbjct: 122 -------------------DEIPHDLTFDLIWSNPPIRIGKEALHELLMAW 153


>gi|240015595|ref|ZP_04722135.1| HemK [Neisseria gonorrhoeae FA6140]
 gi|240114685|ref|ZP_04728747.1| HemK [Neisseria gonorrhoeae PID18]
 gi|268600328|ref|ZP_06134495.1| hemK protein [Neisseria gonorrhoeae PID18]
 gi|268584459|gb|EEZ49135.1| hemK protein [Neisseria gonorrhoeae PID18]
          Length = 301

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 84/232 (36%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 66  EEMPDEIRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPNVLIPRPE----- 115

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 116 ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISTPALET 168

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  ER++               I  +PP   +G 
Sbjct: 169 ARKNAADLGAR-VEFAHGS--WFDTDMPSERQW-------------DIIVSNPPYIENGD 212

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 213 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 263


>gi|171742499|ref|ZP_02918306.1| hypothetical protein BIFDEN_01611 [Bifidobacterium dentium ATCC
           27678]
 gi|171278113|gb|EDT45774.1| hypothetical protein BIFDEN_01611 [Bifidobacterium dentium ATCC
           27678]
          Length = 216

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 21/111 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +G  L+L CG G  +L +A       V A+++ + ++E  + N   N +  +  V  
Sbjct: 71  PAQEGTFLDLGCGWGPIALTMALESPKADVWALDVNERALELTKRNAEINGIGTIHAVTA 130

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                              D   H   F  I+ +PP     +A   ++ A+
Sbjct: 131 -------------------DEIPHDLTFDLIWSNPPIRIGKEALHELLMAW 162


>gi|157877432|ref|XP_001687033.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68130108|emb|CAJ09416.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 514

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 14/103 (13%)

Query: 212 DLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G   + LA+H     V A++I   +V  +R N   N ++  +     S  F
Sbjct: 305 RILDVCCGTGCIGVALAKHLPSAVVTALDILPEAVRVSRENAMRNGISPERYSARESDMF 364

Query: 270 TQAMRREREFNRLKDI------------DIHSYRFKTIFVDPP 300
              +         K              D ++  +  I  +PP
Sbjct: 365 GCFLEGRVSGPPGKSANLSEDRPLGTVKDAYAGTYDVIVSNPP 407


>gi|22297994|ref|NP_681241.1| Mg-protoporphyrin IX methyl transferase [Thermosynechococcus
           elongatus BP-1]
 gi|22294172|dbj|BAC08003.1| Mg-protoporphyrin IX methyl transferase [Thermosynechococcus
           elongatus BP-1]
          Length = 238

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +L W+ A        + +  CG G+ S+ LA+   RV A +I++  V  AR   AA
Sbjct: 58  VLAWLKADASLKGKLICDAGCGVGSLSIPLAQLGARVYASDISEKMVAEARDRAAA 113


>gi|254391081|ref|ZP_05006289.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294815552|ref|ZP_06774195.1| 16S rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326443903|ref|ZP_08218637.1| 16S rRNA m(2)G 1207 methyltransferase [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704776|gb|EDY50588.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294328151|gb|EFG09794.1| 16S rRNA methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 209

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 22/110 (20%)

Query: 210 QGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +GD+L+L CG G  +L  A      RV AV++ + ++   R N     + NV        
Sbjct: 63  RGDILDLGCGYGPIALTFATRRKRLRVWAVDVNERALGLVRENAETARLGNVTAC----- 117

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYP 316
                         L D      RF TI+ +PP R G  +    +++  P
Sbjct: 118 --------------LPDEVPEDVRFGTIYSNPPIRIGKAEMHAMLLRWLP 153


>gi|229917063|ref|YP_002885709.1| modification methylase, HemK family [Exiguobacterium sp. AT1b]
 gi|229468492|gb|ACQ70264.1| modification methylase, HemK family [Exiguobacterium sp. AT1b]
          Length = 286

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA-RHFDRVLAVEI 239
            + N  +         +++WVL   + ++ D ++++  G+G  ++ L+     RV  V+I
Sbjct: 83  FEVNRDVLIPRPETEELIDWVLGQLRHVKDDEIVDVGTGSGAIAITLSLELGVRVQTVDI 142

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMS 265
           ++ ++E A+ N AA     V+     
Sbjct: 143 SREAIEVAKRNAAALGAT-VQFYEGD 167


>gi|172035231|ref|YP_001801732.1| Mg-protoporphyrin IX methyl transferase [Cyanothece sp. ATCC 51142]
 gi|171696685|gb|ACB49666.1| magnesium-protoporphyrin O-methyltransferase [Cyanothece sp. ATCC
           51142]
          Length = 239

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN--H 255
           ++ W+ A        + +  CG G+ S+ LA+   ++ A +I++  V  A+         
Sbjct: 60  VVAWLKADGNLANLSICDAGCGVGSLSIPLAQEGAKIFASDISEKMVTEAQERAQKALKD 119

Query: 256 VNNVKIVRMSSKEFT 270
            +NV       +  T
Sbjct: 120 ASNVTFAVQDLESLT 134


>gi|38233728|ref|NP_939495.1| putative DNA methylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199989|emb|CAE49658.1| Putative DNA methylase [Corynebacterium diphtheriae]
          Length = 192

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L+ G+G   L   +R  + V+ VE    +V   R+NIA     +V +V M +  +
Sbjct: 45  ARVLDLFAGSGALGLEAASRGAESVVLVENNPKAVAVIRHNIAVVGHPHVDVVEMKASTY 104

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
             +  +                F  +  DPP    D A V M+ A
Sbjct: 105 VASAPK--------------NHFDMVLADPPYDLDDQAVVEMLHA 135


>gi|47566850|ref|ZP_00237568.1| conserved hypothetical protein protein [Bacillus cereus G9241]
 gi|47556479|gb|EAL14812.1| conserved hypothetical protein protein [Bacillus cereus G9241]
          Length = 239

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +LE ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       
Sbjct: 33  LLEKLVLQYAPPDSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA-----P 87

Query: 258 NVKIVRMSSKEF 269
           +   +   ++ F
Sbjct: 88  DAAFIVDDARYF 99


>gi|325106852|ref|YP_004267920.1| PUA domain containing protein [Planctomyces brasiliensis DSM 5305]
 gi|324967120|gb|ADY57898.1| PUA domain containing protein [Planctomyces brasiliensis DSM 5305]
          Length = 396

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 92/303 (30%), Gaps = 35/303 (11%)

Query: 49  FHIWHDGDDLYHIMFDQQTKERMRI----------DYFMPGSLLINALMIEMMATIRLEP 98
             +  +G  +   +++  ++ R+R+          D F    +     + + M       
Sbjct: 45  LVVSQEGKPIARGLYNADSQIRVRLYSWQVDTPLDDNFWKSRIASAVRLRQQMFADDQAQ 104

Query: 99  LLRAKLFQIDYLTSQS----DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL--- 151
             R    + D L+  +       +      + L          L++AL  +   ++    
Sbjct: 105 ACRVIFSESDGLSGLTVDRFGDWLSVQFTSQALAQRIDTICDALQEALSPKGIWLRTEKG 164

Query: 152 IGRANKTKICLDRDYVDER---LTVAGRTLIYRQI-----ENSFTQPNAGINVHMLEWVL 203
           +  A    +       +E    L +    L YR       +  F            +  L
Sbjct: 165 MTAAEGLTLSDGLLRGEEPPQPLHITENGLQYRVDLVEGQKTGFY-------YDQRDNRL 217

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV-NNVK 260
           AA + + G +L++   +G F++   +H   D V  V+ +  ++  A  N   N +   ++
Sbjct: 218 AAARYLSGKVLDVCSYSGGFAMNALKHGRADEVTCVDSSAGAMALAEENAGLNGLAEKMR 277

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                + +F            L        R             + A +  +     ++ 
Sbjct: 278 FETADALKFLDQTEERYNGIILDPPKFARSRGGLNRAAKAYRKWNMAAMHRLDGPGILVT 337

Query: 321 ISC 323
            SC
Sbjct: 338 CSC 340


>gi|307331070|ref|ZP_07610199.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
 gi|306883281|gb|EFN14338.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
           4113]
          Length = 393

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 17/104 (16%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                  +     + +L CG G  ++ LAR    VLAV+    +   AR N  A  +   
Sbjct: 91  YRAARFAEFGVRRMADLCCGIGGDAIALARTGISVLAVDRDPLTCAVARANAQALGL--A 148

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +++ +   + T               DI +  F  +FVDP R G
Sbjct: 149 ELIEIRCADVT---------------DIDTRPFDAVFVDPARRG 177


>gi|284041606|ref|YP_003391946.1| protein-L-isoaspartate O-methyltransferase [Conexibacter woesei DSM
           14684]
 gi|283945827|gb|ADB48571.1| protein-L-isoaspartate O-methyltransferase [Conexibacter woesei DSM
           14684]
          Length = 206

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   MLE +     G   D+L++  G+G  + +LAR    V  +E  +    AA  N+
Sbjct: 58  PLVVARMLEVL---DLGPDDDVLDVGTGSGYHAALLARLVRHVWTIERHRRLSAAAEGNL 114

Query: 252 AANHVNNVKIVRMS 265
            A  V NV ++   
Sbjct: 115 RAAGVENVTVLVGD 128


>gi|224035651|gb|ACN36901.1| unknown [Zea mays]
          Length = 490

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSK 267
           +GD++ +++ G G FS+  A+    V A ++   SV   R N   N V +      M ++
Sbjct: 219 KGDVICDMFAGIGPFSIPSAQKGCVVYANDLNPDSVHYLRTNAKINKVEDYIFAYNMDAR 278

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            F Q +          D  + +    +    PP
Sbjct: 279 VFMQKLMTVPGLETRSDSQVATDESYSKEGVPP 311


>gi|326673745|ref|XP_003199977.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Danio
           rerio]
          Length = 408

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           E +  A+    G+ +++LY G G F+L   +  +   V A E    +V A + ++  N V
Sbjct: 207 EKLRIASFDCSGETVVDLYAGIGYFTLPYLVHANAAHVHACEWNPDAVAALQKSLEINGV 266

Query: 257 NN-VKIVRMSSKEFTQAMRRER 277
           +N   + +  +++ + +   +R
Sbjct: 267 SNRCTVHQGDNRQLSLSDLADR 288


>gi|75762681|ref|ZP_00742520.1| Peptide release factor-glutamine N5-methyltransferase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228903803|ref|ZP_04067919.1| Protein hemK [Bacillus thuringiensis IBL 4222]
 gi|228942475|ref|ZP_04105012.1| Protein hemK [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228975407|ref|ZP_04135963.1| Protein hemK [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982044|ref|ZP_04142337.1| Protein hemK [Bacillus thuringiensis Bt407]
 gi|74489827|gb|EAO53204.1| Peptide release factor-glutamine N5-methyltransferase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|228777708|gb|EEM25982.1| Protein hemK [Bacillus thuringiensis Bt407]
 gi|228784389|gb|EEM32412.1| Protein hemK [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228817217|gb|EEM63305.1| Protein hemK [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228855830|gb|EEN00374.1| Protein hemK [Bacillus thuringiensis IBL 4222]
 gi|326943126|gb|AEA19022.1| modification methylase, HemK family [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 283

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 44/164 (26%)

Query: 164 RDYVDERLTVAGRTLIYRQIEN---------------SFTQPNAGI------NVHM---- 198
           R+ ++E    +    I++ +E                SF   N  +         +    
Sbjct: 44  REEINEEQEASFTEFIHKHVEGIPIQYMIGYEMFYGRSFF-VNEEVLIPRPETEELIVGV 102

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  A   
Sbjct: 103 LERIERHFGDKELHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKALGA 162

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V                      L   D    +   +  +PP
Sbjct: 163 E-VTFYHGDL---------------LSPFDKTGQKLDVVVSNPP 190


>gi|332188253|ref|ZP_08389981.1| putative SAM-dependent methyltransferase [Sphingomonas sp. S17]
 gi|332011752|gb|EGI53829.1| putative SAM-dependent methyltransferase [Sphingomonas sp. S17]
          Length = 273

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 28/161 (17%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
            +    +   +R +   F    A +   M E V         + + L+   G  +L +A 
Sbjct: 68  EVRFTAQNTPFRHL--GFFPDMAPVWSWMREQVADLE---SPECMNLFGYTGVGTLAMAS 122

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDI 287
              +++ V+ +K SVEAAR N   + + +  V+ +   + +F     R            
Sbjct: 123 AGAKMVHVDASKKSVEAARGNAMLSGLGDAPVRWIIDDAAKFVAREGR------------ 170

Query: 288 HSYRFKTIFVDPPRSG---------LDDATVGMVQAYPHIL 319
              R+  I +DPP+ G         L++   G++     +L
Sbjct: 171 RGRRYDGILLDPPKYGRGPEGEVWRLEEDLPGLIADCRKLL 211


>gi|330507865|ref|YP_004384293.1| Met10+ like methyltransferase [Methanosaeta concilii GP-6]
 gi|328928673|gb|AEB68475.1| Met10+ like methyltransferase [Methanosaeta concilii GP-6]
          Length = 266

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 175 GRTLIYRQ---IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
            R   +R    +   F   N+ +    +   +    G +  +  L+ G G F++  A   
Sbjct: 88  HREFGFRYHLDVARVFF--NSRLGYERMRVAVQVKAGEEALV--LFAGVGPFAIPPAARG 143

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV+A+E +  +      N   N V   +I  +++  F+ A   +R F+R   I    Y 
Sbjct: 144 ARVVALEKSPEACSWLAENARENGVAE-RIAVINADAFSMAALLKRRFDR--AIVPAPYG 200

Query: 292 FKTIFVDPP 300
              I    P
Sbjct: 201 MDRIVDALP 209


>gi|257095261|ref|YP_003168902.1| PUA domain-containing protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047785|gb|ACV36973.1| PUA domain containing protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 396

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L         +L  +C  G FSL  LA     VL+++ + P++  A  N+A N     
Sbjct: 211 RLLTRELAGGRTVLNCFCYTGGFSLQALAGGATSVLSIDSSGPALSTAVDNLARN----P 266

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           ++    ++      R+   F+ L+ +    +RF  I +DPP+      
Sbjct: 267 ELAADRAE-----WRQADVFSELRVLKSAGHRFDLIILDPPKFAPSAQ 309


>gi|269792718|ref|YP_003317622.1| hypothetical protein Taci_1108 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100353|gb|ACZ19340.1| Protein of unknown function methylase putative [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 169

 Score = 49.6 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 20/125 (16%)

Query: 197 HMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +L+ +      ++G D L+L+ G+G  S+  A    RV AVE+ +   EA R       
Sbjct: 19  KVLQALFNILGPLEGVDFLDLFAGSGRVSVEAASRGARVTAVEVDRRCCEAMRT------ 72

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQA 314
           +   ++V+   + F     RE               +  +F DPP   G  +  + +++ 
Sbjct: 73  LGGFRVVQGDVRRFIPRAARE------------GDSYGVVFADPPYCMGWVEELLELLRG 120

Query: 315 YPHIL 319
              ++
Sbjct: 121 NRTVV 125


>gi|326771964|ref|ZP_08231249.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Actinomyces viscosus C505]
 gi|326638097|gb|EGE38998.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Actinomyces viscosus C505]
          Length = 301

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 194 INVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
           +    +E       G  G +L  +L  G+G  +  +A+     RV+AVEI++ +   AR 
Sbjct: 114 VAGAAIEAAREVMDGGGGVVLTADLCTGSGAIAACVAKEVPGARVVAVEISETAASLARE 173

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N        V+++   + +             L   D++  +   +  +PP
Sbjct: 174 NCERLVPGRVEVIHADATD------------PLVLHDLNG-QIDVVVSNPP 211


>gi|291616956|ref|YP_003519698.1| YccW [Pantoea ananatis LMG 20103]
 gi|291151986|gb|ADD76570.1| YccW [Pantoea ananatis LMG 20103]
 gi|327393384|dbj|BAK10806.1| SAM-dependent methyltransferase YccW [Pantoea ananatis AJ13355]
          Length = 396

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 56/163 (34%), Gaps = 17/163 (10%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NV 259
                     +L  +   G F++  L      V++V+ ++ +++ AR N+  N ++    
Sbjct: 214 ATRRYAKDARVLNCFSYTGGFAVSALIGGCKEVISVDTSQDALDVARQNVELNGLDLSRA 273

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYP 316
           +  R    +  +  R E E   L  +D   +      +     G  D     + ++    
Sbjct: 274 RFQRDDVFKLLRRYRDEGEKFDLIIMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGG 333

Query: 317 HILYISCNPDSLCRDL-------SILSTTHTIERLALFDQFPY 352
            +L  SC+   +  DL       + L        +   +QF  
Sbjct: 334 MLLTFSCS-GLMATDLFQKIIADAALDAG---RDVQFVEQFRQ 372


>gi|33594691|ref|NP_882335.1| ubiE/COQ5 methyltransferase family protein [Bordetella pertussis
           Tohama I]
 gi|33603429|ref|NP_890989.1| ubiE/COQ5 methyltransferase family protein [Bordetella
           bronchiseptica RB50]
 gi|33564767|emb|CAE44093.1| ubiE/COQ5 methyltransferase family protein [Bordetella pertussis
           Tohama I]
 gi|33577553|emb|CAE34818.1| ubiE/COQ5 methyltransferase family protein [Bordetella
           bronchiseptica RB50]
 gi|332384102|gb|AEE68949.1| ubiE/COQ5 methyltransferase family protein [Bordetella pertussis
           CS]
          Length = 257

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 33/78 (42%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +L+    A +     LL+L  G G+ S  +A H   V+A ++++  ++      
Sbjct: 28  HAQGEDLLQMAAIAREHPGARLLDLGTGGGHVSFHVAPHVAEVVAYDLSQSMLDVVAGEA 87

Query: 252 AANHVNNVKIVRMSSKEF 269
           A   + N++  R  ++  
Sbjct: 88  ARRGLANLRTCRGKAEAL 105


>gi|86142851|ref|ZP_01061290.1| putative protoporphyrinogen oxidase [Leeuwenhoekiella blandensis
           MED217]
 gi|85830883|gb|EAQ49341.1| putative protoporphyrinogen oxidase [Leeuwenhoekiella blandensis
           MED217]
          Length = 280

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 25/121 (20%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEI 239
            Q +  +         +++W+    K     +L++  G+G  ++ LA+     +V A+++
Sbjct: 85  FQLSPAVLIPRPETEELVDWIYTDFKNTSCTILDIGTGSGAIAVSLAKLLPEAKVTAIDV 144

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           ++ +++ A  N ++N V NV+ ++                  + D       +  I  +P
Sbjct: 145 SEDALKIAEANASSNAV-NVQFIKQD----------------ILDCQALDRSYDVIVSNP 187

Query: 300 P 300
           P
Sbjct: 188 P 188


>gi|325129314|gb|EGC52151.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis OX99.30304]
 gi|325135296|gb|EGC57917.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis M0579]
 gi|325201297|gb|ADY96751.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis M01-240149]
 gi|325208917|gb|ADZ04369.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis NZ-05/33]
          Length = 273

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISTPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
                G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|311900662|dbj|BAJ33070.1| putative methyltransferase [Kitasatospora setae KM-6054]
          Length = 241

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +L ++  A +    ++L+L CG G F+L+LA    RV+ V+ A  SVE AR         
Sbjct: 25  LLPYLALAGELGAAEVLDLGCGTGVFALLLAGRGTRVVGVDPAAASVEVAR---GKPGAE 81

Query: 258 NVKIVRMSSK 267
            V+ +   + 
Sbjct: 82  RVRWLVGDAT 91


>gi|326318377|ref|YP_004236049.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375213|gb|ADX47482.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 311

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 23/127 (18%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYN 250
              +++W L   + +    + +L  G+G  +L L         VLAV+ +  ++  AR N
Sbjct: 105 TETLVDWALEVLQPLPAPRVADLGTGSGAIALALRHGLPGAQVVLAVDASADALAVARAN 164

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
               H+                     +F R   +D  S  F  +  +PP    DD  + 
Sbjct: 165 AQRLHL-------------------PVDFVRTSWLDGISGPFDAVVSNPPYIEEDDPHLA 205

Query: 311 MVQAYPH 317
            +   P 
Sbjct: 206 ALVHEPR 212


>gi|297565961|ref|YP_003684933.1| modification methylase, HemK family [Meiothermus silvanus DSM 9946]
 gi|296850410|gb|ADH63425.1| modification methylase, HemK family [Meiothermus silvanus DSM 9946]
          Length = 288

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 195 NVHMLEWVL---AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
              ++E  L   +A +   G LL++  G+G  +L L R      V A EI   +V  AR 
Sbjct: 105 TERLVELALGLLSAERSFTGRLLDVGTGSGAIALALKRRCPKAEVWATEIDPAAVALARE 164

Query: 250 NIAANHVN 257
           N     + 
Sbjct: 165 NARRAGLE 172


>gi|154486382|ref|ZP_02027789.1| hypothetical protein BIFADO_00194 [Bifidobacterium adolescentis
           L2-32]
 gi|154084245|gb|EDN83290.1| hypothetical protein BIFADO_00194 [Bifidobacterium adolescentis
           L2-32]
          Length = 424

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 56/159 (35%), Gaps = 27/159 (16%)

Query: 192 AGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           A I   +L  +   A        + +L  G G     LAR F     VE      E A +
Sbjct: 85  AEIARRLLRSLPQSAGQTANDATMTDLTGGFGVDFSYLARGFGHATYVERQSHLCELAAH 144

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N+AA  +   ++V     E+ +AM                   + I++DP R     A  
Sbjct: 145 NMAALGLTQAQVVCGDGVEYLRAM----------------EPVQLIYIDPARRDEHGART 188

Query: 310 GMVQAYPHILYISCNPDSLC-RDLSILSTTHTIERLALF 347
             ++         C PD L  RDL +    + + +L+  
Sbjct: 189 YAIED--------CTPDVLALRDLLLAKARYVMIKLSPM 219


>gi|148556912|ref|YP_001264494.1| type 12 methyltransferase [Sphingomonas wittichii RW1]
 gi|148502102|gb|ABQ70356.1| Methyltransferase type 12 [Sphingomonas wittichii RW1]
          Length = 317

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 19/147 (12%)

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQ-------------GDLLELYCGNGNFSLVLARHF 231
           +SF Q N   N+            +              G  L+  CG G  +L LA H 
Sbjct: 108 DSFRQENLAANIDAFYASGRNDVDLHLHFLRRAGLPVRFGKALDFGCGVGRLTLGLAAHA 167

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
           D+V+ V+I+ P +  A      + V N+    +++ +    + R R+F+ +  + +  + 
Sbjct: 168 DQVVGVDISPPHLRLATERARESAVANISFESIAAPD---DLDRYRDFDLVISLIVLQHN 224

Query: 292 FKTIFVDPPR---SGLDDATVGMVQAY 315
              +     R     L    V ++Q  
Sbjct: 225 PPPVMASLYRNLLRALAPGGVAIIQMP 251


>gi|326561083|gb|EGE11448.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           7169]
          Length = 310

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W LAA +     +++  CG+G   +  L     +VLAV+I   +V A R N A N V+
Sbjct: 153 LDW-LAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVD 211

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +              +  E +  R ++  +       I    P  G       +++    
Sbjct: 212 DR---------LLAFLPAEFDAYRTQNPQLADVITANILA-KPLIGFAPLFHDLLKTGGL 261

Query: 318 IL 319
           I+
Sbjct: 262 IV 263


>gi|323964711|gb|EGB60182.1| protein-(glutamine-N5) methyltransferase [Escherichia coli M863]
 gi|327253902|gb|EGE65531.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Escherichia coli STEC_7v]
          Length = 277

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    + AV+    ++  A+ N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEITAVDRMPDAIALAQRNAQNLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++ +   +  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQSN---WFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|296112846|ref|YP_003626784.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis RH4]
 gi|295920540|gb|ADG60891.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis RH4]
          Length = 310

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W LAA +     +++  CG+G   +  L     +VLAV+I   +V A R N A N V+
Sbjct: 153 LDW-LAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVD 211

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +              +  E +  R ++  +       I    P  G       +++    
Sbjct: 212 DR---------LLAFLPAEFDAYRTQNPQLADVITANILA-KPLIGFAPLFHDLLKTGGL 261

Query: 318 IL 319
           I+
Sbjct: 262 IV 263


>gi|53802699|ref|YP_112622.1| UbiE/COQ5 family methlytransferase [Methylococcus capsulatus str.
           Bath]
 gi|53756460|gb|AAU90751.1| methyltransferase, UbiE/COQ5 family [Methylococcus capsulatus str.
           Bath]
          Length = 305

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVK 260
              A       +L+  CG G  S+ LA+H   R   + +++  VE AR N   + V +  
Sbjct: 77  AAIAGIEAGDHVLDAGCGIGGSSIWLAKHVGARATGITVSEQQVEHARRNARRHGVADKT 136

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             +    +F Q    +  F+ +  ++   Y    
Sbjct: 137 EFQ--VADFCQTPFPDAVFDVVWAVESSCYATDK 168


>gi|321451313|gb|EFX63009.1| hypothetical protein DAPPUDRAFT_269241 [Daphnia pulex]
          Length = 253

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 185 NSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           +S+       I  H+ E            +++++CG G  S+  A   +RV+A++I    
Sbjct: 69  DSWFSVTPERIARHIAERCRCDL------IVDVFCGAGGNSIQFAFKCERVIAIDIDPSK 122

Query: 244 VEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREF 279
           +E AR+N +     + ++ +     +   +++ +  F
Sbjct: 123 IELARHNASVYGVADRIEFIVGDFFQLAPSLKADVVF 159


>gi|313885608|ref|ZP_07819358.1| methyltransferase small domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619338|gb|EFR30777.1| methyltransferase small domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 251

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 19/135 (14%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
            ERL    R  I+     ++    + ++  +L   +          ++   GNG   L+L
Sbjct: 12  QERLDYFKRENIHLIQSKAYF--ASSLDAVLLADFIKLPHSRPFHYIDFCSGNGVIPLLL 69

Query: 228 ARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDI 285
           AR     +  +EI    V+ AR ++A N + + V  +    K+FT+ +            
Sbjct: 70  ARKSHSPLTGLEIQSELVDMARRSVALNDLGDKVSFIEGDLKDFTRPL------------ 117

Query: 286 DIHSYRFKTIFVDPP 300
                ++  +  +PP
Sbjct: 118 ---GIQYDIVSCNPP 129


>gi|296166112|ref|ZP_06848557.1| CheR methyltransferase SAM binding domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295898521|gb|EFG78082.1| CheR methyltransferase SAM binding domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 211

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-A 252
           +N  + E          G  L+L CG G  +L LA    RV+AV+++  ++  A      
Sbjct: 31  VNPRLAEVAADL---PAGRALDLGCGEGADALWLAERGWRVVAVDVSATALRRATEAASQ 87

Query: 253 ANHVNNVKIVRMSSKE 268
            N +  +        E
Sbjct: 88  RNLLAQIDFQCHDLNE 103


>gi|292669690|ref|ZP_06603116.1| ribosomal protein L11 methyltransferase [Selenomonas noxia ATCC
           43541]
 gi|292648487|gb|EFF66459.1| ribosomal protein L11 methyltransferase [Selenomonas noxia ATCC
           43541]
          Length = 316

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 15/141 (10%)

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T+ +  + D+ W E     +  +H  K   +++ R              E  T +   ++
Sbjct: 98  TISHSFVADEDWAETW---KAYIHTEKIGERIVVRPT-----------WEEYTPSADEIV 143

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVE 238
                 +     A     M    L         + ++ CG+G  ++  A+     V+A++
Sbjct: 144 IELDPGAAFGTGAHATTAMCLRWLEHLVSPGMRVYDVGCGSGILAVAAAKLGAGEVIAMD 203

Query: 239 IAKPSVEAARYNIAANHVNNV 259
               +V  A  NI  N+V+NV
Sbjct: 204 YDPVAVSVAEGNIRQNNVHNV 224


>gi|261403248|ref|YP_003247472.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
 gi|261370241|gb|ACX72990.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
          Length = 265

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 45/112 (40%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            V+  T      + +L  G+G  +++ A+   +V A+E+   + E A+ N+  N   N++
Sbjct: 31  KVIENTLKGGEVIYDLGTGSGILAMMSAKKAKKVYAIELDPFTYEYAKENVYINGFKNIE 90

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           ++   +  +    + +     L D  + +     +     + G       ++
Sbjct: 91  VIEGDASLYNFKEKADVIIAELLDTALITEPQVNVLNSIIKRGYLKENAKII 142


>gi|257791107|ref|YP_003181713.1| methyltransferase [Eggerthella lenta DSM 2243]
 gi|325830871|ref|ZP_08164255.1| RNA methyltransferase, RsmD family [Eggerthella sp. HGA1]
 gi|257475004|gb|ACV55324.1| methyltransferase [Eggerthella lenta DSM 2243]
 gi|325487278|gb|EGC89721.1| RNA methyltransferase, RsmD family [Eggerthella sp. HGA1]
          Length = 197

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 15/133 (11%)

Query: 194 INVHMLEWVLAATKGIQGDL-LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI 251
           +   M+  V +A  G    + L+ + G+G   L  L+R    V   E    ++ A   N+
Sbjct: 28  VREAMMSTVHSARGGFDDAVVLDAFAGSGALGLEALSRGARSVQFCERGGEALRALNANV 87

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               ++  +              R R+ + LKD+      F  +F+DPP +      +G+
Sbjct: 88  RLLGLDARR-------------ARVRKGDVLKDVPYARPPFDLVFLDPPYACAAAEVLGL 134

Query: 312 VQAYPHILYISCN 324
           V A      +S +
Sbjct: 135 VVALRTRAALSDD 147


>gi|119025051|ref|YP_908896.1| N6-adenine-specific methylase [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764635|dbj|BAF38814.1| N6-adenine-specific methylase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 424

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 56/159 (35%), Gaps = 27/159 (16%)

Query: 192 AGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           A I   +L  +   A        + +L  G G     LAR F     VE      E A +
Sbjct: 85  AEIARRLLRSLPQSAGQTANDATMTDLTGGFGVDFSYLARGFGHATYVERQSHLCELAAH 144

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N+AA  +   ++V     E+ +AM                   + I++DP R     A  
Sbjct: 145 NMAALGLTQAQVVCGDGVEYLRAM----------------EPAQLIYIDPARRDEHGART 188

Query: 310 GMVQAYPHILYISCNPDSLC-RDLSILSTTHTIERLALF 347
             ++         C PD L  RDL +    + + +L+  
Sbjct: 189 YAIED--------CTPDVLALRDLLLAKARYVMIKLSPM 219


>gi|315655231|ref|ZP_07908132.1| 16S rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
 gi|315490486|gb|EFU80110.1| 16S rRNA methyltransferase [Mobiluncus curtisii ATCC 51333]
          Length = 214

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 18/111 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G  G L+++ CG G  +L LA  R   +V AV++   ++E  R N  AN ++N+      
Sbjct: 68  GGSGVLVDVGCGWGPLALTLAVERPSAQVYAVDVNTRALELTRANATANGLHNI------ 121

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                Q +     F  L            I+ +PP      A   M +A+ 
Sbjct: 122 -----QVLSEADAFATLG-----PNSVDVIWSNPPVRVGKTALHSMWEAWR 162


>gi|295690067|ref|YP_003593760.1| methyltransferase [Caulobacter segnis ATCC 21756]
 gi|295431970|gb|ADG11142.1| methyltransferase [Caulobacter segnis ATCC 21756]
          Length = 303

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-- 258
              A T G Q  +L L+   G  SLV A     V  V+ +K SV  AR N A   + +  
Sbjct: 122 RAFAKTSGRQPKILNLFGYTGVASLVCAAAGAAVTHVDASKKSVGFARENAAFASLADKP 181

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           ++ +   +++F     R                +  I +DPP+ G   
Sbjct: 182 IRWIVEDARKFVAREVR------------RGNVYDGIILDPPKFGRGA 217


>gi|260818888|ref|XP_002604614.1| hypothetical protein BRAFLDRAFT_92848 [Branchiostoma floridae]
 gi|229289942|gb|EEN60625.1| hypothetical protein BRAFLDRAFT_92848 [Branchiostoma floridae]
          Length = 267

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
             + +++          ++L CG+G  + +LA HF RV  ++++   +E A  N   N+ 
Sbjct: 46  KAVSFLMEKNPAQLYHAVDLGCGSGQTTELLAPHFQRVTGMDVSDAQIEVATAN---NNY 102

Query: 257 NNVKIVRMSSKEF 269
           +N++ +  S++E 
Sbjct: 103 SNIQYMVGSAEEL 115


>gi|326385985|ref|ZP_08207609.1| glycosyl transferase family 2 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209210|gb|EGD60003.1| glycosyl transferase family 2 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 995

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 54/179 (30%), Gaps = 24/179 (13%)

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N    +   +  +A   G + D  LE+ C  G F+  LA   D VLA +IA  +VE A  
Sbjct: 548 NPYEALK-YDQTMALLDGRRFDSALEIACAEGEFTRRLAGTCDSVLATDIAPSAVERAAR 606

Query: 250 NIAANHVNNVKIVRMS--------------SKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
                 + NV   R+                 E    +  E    R         R    
Sbjct: 607 --KLAGLGNVTCRRLDLLRDNLVGQYDLIVCSEVLYYLEDEEVLGRFAAKVAEHLRPGGW 664

Query: 296 FVDPPRSGLDDATVGMVQAYP------HILYISCNPDSLCRDLSILSTTHTIERLALFD 348
           FV        D        +P       I  +  N   L  D    +  + I+R    D
Sbjct: 665 FVTAHARLASDEPGQTGFGWPHPFGSRRIGAVFANTPGLALDCEFSTPVYRIQRFVKVD 723


>gi|325066843|ref|ZP_08125516.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Actinomyces oris K20]
          Length = 285

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 194 INVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
           +    +E       G  G +L  +L  G+G  +  +A+     RV+AVEI++ +   AR 
Sbjct: 98  VAGAAIEAAREVMDGGGGVVLTADLCTGSGAIAACVAKEVPGARVVAVEISETAASLARE 157

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N        V+++   + +             L   D++  +   +  +PP
Sbjct: 158 NCERLVPGRVEVIHADATD------------PLVLHDLNG-QVDVVVSNPP 195


>gi|297544382|ref|YP_003676684.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842157|gb|ADH60673.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 308

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 37/223 (16%)

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
           YF   S  I+ + I +   I         +   D   S+ D+            + W   
Sbjct: 66  YFPIASDTIDKINI-LKDRIVELKSFGIDIGNFDLKVSEVDE------------EDWANN 112

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
             +    L                KI + +   +E ++     +I      +F       
Sbjct: 113 WKQYYKPLKI------------GKKIVI-KPSWEEYVSQGEEIIIELDPGMAFG-TGTHE 158

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M   +L      +  + ++ CG+G  S+   +     V A +I + SVE AR N+  
Sbjct: 159 TTKMCLELLEEIVMPESIVFDIGCGSGILSIASGKLGAKEVYAADIDEVSVEVARQNVEL 218

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           N++ NVK+ +              EF+   DI + +     I 
Sbjct: 219 NNLQNVKVFKSDL---------LNEFDGKADIIVANIIADVII 252


>gi|325676133|ref|ZP_08155814.1| type 12 methyltransferase [Rhodococcus equi ATCC 33707]
 gi|325553043|gb|EGD22724.1| type 12 methyltransferase [Rhodococcus equi ATCC 33707]
          Length = 201

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A     +L+  +A         L+L CG G+ S+ LA+    V AV+    ++E AR  +
Sbjct: 25  AEQLNRLLD-AVAVPGEAAARALDLGCGTGDHSIELAKRGWSVTAVDSVPLAIERARAKL 83

Query: 252 AANHVNNVKIVRMSSKEF 269
                + V+ V       
Sbjct: 84  PVAGAD-VRFVLGDVTHL 100


>gi|315426244|dbj|BAJ47887.1| methyltransferase [Candidatus Caldiarchaeum subterraneum]
 gi|315427875|dbj|BAJ49467.1| methyltransferase [Candidatus Caldiarchaeum subterraneum]
          Length = 318

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVN-NV 259
           +AA  G    +L+++ G G FS+++AR      + AVE    +      NI  N V   V
Sbjct: 163 VAAQVGENETVLDMFAGVGPFSILIARKHPSTTIYAVEKNPAACSYLLENIKLNKVEKQV 222

Query: 260 KIVRMSSKEFTQAMRRE 276
           K     + E    + ++
Sbjct: 223 KPFCGDAAEIVPQLDKQ 239


>gi|241662223|ref|YP_002980583.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           pickettii 12D]
 gi|240864250|gb|ACS61911.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           pickettii 12D]
          Length = 236

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         D+LE+  G+G  + +LA    +V  ++I    V  AR N+
Sbjct: 83  PRVEARVLQELAVRKHE---DVLEVGAGSGYMAALLAHRGRQVTTLDIVPELVAFARDNL 139

Query: 252 AANHVNNVKIVRMS 265
           + N V NV +V  S
Sbjct: 140 SRNGVTNVDVVEAS 153


>gi|170288927|ref|YP_001739165.1| hypothetical protein TRQ2_1137 [Thermotoga sp. RQ2]
 gi|170176430|gb|ACB09482.1| conserved hypothetical protein [Thermotoga sp. RQ2]
          Length = 391

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 200 EWVLAATKGIQGDL-LELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           E         +G + L+++   GNF++ L +     V  V+ ++ ++E AR  +  N  +
Sbjct: 203 ENARMVMDLAEGKVCLDVFSYTGNFAVHLLKGGAKHVTLVDYSERALEVAREILKLNGFD 262

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           + +            +     F+ LK  D    ++  + +DPP      + +   +
Sbjct: 263 SSRY----------DLLPGNAFDILKSFDREGRKYDLVVLDPPSFAKSSSNLESAR 308


>gi|157963445|ref|YP_001503479.1| hypothetical protein Spea_3633 [Shewanella pealeana ATCC 700345]
 gi|157848445|gb|ABV88944.1| conserved hypothetical protein [Shewanella pealeana ATCC 700345]
          Length = 350

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 26/147 (17%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E+V A ++G    +L L+          A     RV+ V+ +  ++ A R N A N   +
Sbjct: 154 EYVAANSQGKS--VLNLFSYTCGIGTAAAVGGATRVVNVDFSSFALAAGRKNAALNQAED 211

Query: 259 -VKIVRMSSKEFTQAMRREREFNRL-----KDIDIHSYRFKTIFVDPPR----------- 301
             + ++  +    + +   +   R          + + +F  +F+DPPR           
Sbjct: 212 VCEFIQSDAFPALRQLAGLKVGGRRNQKLPAYPKLSATQFDLVFLDPPRYAKSPFGIVDL 271

Query: 302 ----SGLDDATVGMVQAYPHILYISCN 324
                GL    +   +A   I  + CN
Sbjct: 272 VNDYQGLFKPALLTTKAGGTI--VCCN 296


>gi|156741521|ref|YP_001431650.1| Mg-protoporphyrin IX methyl transferase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232849|gb|ABU57632.1| magnesium protoporphyrin O-methyltransferase [Roseiflexus
           castenholzii DSM 13941]
          Length = 237

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           A     +LEW+ A  +       L+  CG G FS++LA+H   V AV+IA   V AA   
Sbjct: 50  ARAETWLLEWIGATGRAPSSLSALDAGCGTGLFSIMLAQHGINVTAVDIAPQMVAAAAER 109

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
                    +       ++          F+ L      ++ 
Sbjct: 110 AQTAGVAQRITFTAGDIEDVAGVFDVVACFDVLIHYPQPAFD 151


>gi|94987531|ref|YP_595464.1| methyltransferase [Lawsonia intracellularis PHE/MN1-00]
 gi|94731780|emb|CAJ55143.1| predicted methyltransferase [Lawsonia intracellularis PHE/MN1-00]
          Length = 217

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA 252
           N  ++EW+    + I G+L ++L CG G FS V+ +    +V+ VE    ++  A+YN A
Sbjct: 49  NYFLIEWLFHHKEDIAGELCIDLGCGLG-FSAVIGQWLGAKVIGVEYVFEALTYAKYNAA 107

Query: 253 ANHVNNVKIVRMS 265
           +N+++    + M 
Sbjct: 108 SNNISQPYWINMD 120


>gi|15644445|ref|NP_229497.1| hypothetical protein TM1697 [Thermotoga maritima MSB8]
 gi|4982274|gb|AAD36764.1|AE001810_3 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 391

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 200 EWVLAATKGIQGDL-LELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           E         +G + L+++   GNF++ L +     V  V+ ++ ++E AR  +  N  +
Sbjct: 203 ENARMVMDLAEGKVCLDVFSYTGNFAVHLLKGGAKHVTLVDYSERALEVAREILKLNGFD 262

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           + +            +     F+ LK  D    ++  + +DPP      + +   +
Sbjct: 263 SSRY----------DLLPGNAFDILKSFDREGRKYDLVVLDPPSFAKSSSNLESAR 308


>gi|269128454|ref|YP_003301824.1| hypothetical protein Tcur_4259 [Thermomonospora curvata DSM 43183]
 gi|268313412|gb|ACY99786.1| hypothetical protein Tcur_4259 [Thermomonospora curvata DSM 43183]
          Length = 415

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 2/110 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEF 269
           G +L+L CG G   +  AR     + VE    +VE AR N+ A  +     VR   + E 
Sbjct: 101 GPVLDLGCGIGADLIARARAGCAGVGVERDPLTVEVARANLTALGLAERAFVRHGDATEA 160

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
             A      F       +    F     +PP   + D           + 
Sbjct: 161 DPAGFAAV-FADPGRRTLRGRVFDPSCYEPPLDAVLDLAGRAPAGCVKVA 209


>gi|229824583|ref|ZP_04450652.1| hypothetical protein GCWU000282_01927 [Catonella morbi ATCC 51271]
 gi|229785954|gb|EEP22068.1| hypothetical protein GCWU000282_01927 [Catonella morbi ATCC 51271]
          Length = 203

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 20/111 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           ++E    A       ++EL  G G  ++ LA+ +   +V  VEI + + + A+ N   N 
Sbjct: 49  LVEAFADAVPVGSYQIVELGSGYGPVTIALAKLYPQAQVTGVEINERAYQLAQANSQLNR 108

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
           V N       + ++                   S     +  +PP R+G  
Sbjct: 109 VENTAYQLADAGQW-----------------QASQAPDFVVTNPPIRAGKQ 142


>gi|315180255|gb|ADT87169.1| methyltransferase [Vibrio furnissii NCTC 11218]
          Length = 397

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 33/190 (17%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH       ++   N  KI +D       +    +T  Y    +S  Q  
Sbjct: 163 KEGLEERVGVLHGEAPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ-- 213

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                       +       D+L  +   G F L  L     RV+  ++++P+++ A++N
Sbjct: 214 ------------SMKYVKDKDVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFN 261

Query: 251 IAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
              N  + + K V   + +  + +R  R+            +F  + +DPP+     A +
Sbjct: 262 AELNEFDISKKRVVFLNADVFKLLREYRD---------QGTKFDVVIMDPPKFAESKAQL 312

Query: 310 -GMVQAYPHI 318
            G  + Y  I
Sbjct: 313 NGACRGYKDI 322


>gi|302655628|ref|XP_003019600.1| ubiE/COQ5 methyltransferase, putative [Trichophyton verrucosum HKI
           0517]
 gi|291183333|gb|EFE38955.1| ubiE/COQ5 methyltransferase, putative [Trichophyton verrucosum HKI
           0517]
          Length = 267

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A         L+L CG+G  +  LA  F +V  ++ +   +E A  N+      NV+ 
Sbjct: 2   IFAYHHDGYDTCLDLGCGHGVVARFLAPKFKKVYGIDPSAGMIEQA-KNLTKEQ--NVEF 58

Query: 262 VRMSSKEF 269
           V+ +++  
Sbjct: 59  VQAAAESL 66


>gi|289470282|gb|ADC96657.1| methyltransferase [Streptomyces sp. SN-1061M]
          Length = 213

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 4/130 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                     +        G LL++ CG G +SL+ A     V  V+ ++  +  AR   
Sbjct: 25  PEQAEAWKSMLADVYPTRSGKLLDIGCGTGTYSLLFAELGFEVHGVDTSEGMIARAREKA 84

Query: 252 AAN----HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            +         V    + ++  +         N L  +         +     +S +  A
Sbjct: 85  LSRSGPGGPPAVMFSVLDAQHISGRYDAVFSRNMLWTVADPGRLTAVVGEHTTKSAVWVA 144

Query: 308 TVGMVQAYPH 317
              M    P+
Sbjct: 145 VETMWDGRPN 154


>gi|302542238|ref|ZP_07294580.1| RsmD family RNA methyltransferase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459856|gb|EFL22949.1| RsmD family RNA methyltransferase [Streptomyces himastatinicus ATCC
           53653]
          Length = 195

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 13/103 (12%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+LY G+G   L  L+R    VL VE    +    R N+ A  +   ++    ++  
Sbjct: 47  ARVLDLYGGSGAVGLEALSRGAAHVLLVESDPRAARTIRENVRALGLPGAELRTGKAEAT 106

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                       +      +  +  +F+DPP    DD    ++
Sbjct: 107 ------------IGGQPPATGPYDVVFLDPPYVVSDDDLREIL 137


>gi|213579807|ref|ZP_03361633.1| hypothetical protein SentesTyph_00817 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 329

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|91977843|ref|YP_570502.1| ribosomal L11 methyltransferase [Rhodopseudomonas palustris BisB5]
 gi|123357306|sp|Q133Y8|PRMA_RHOPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|91684299|gb|ABE40601.1| LSU ribosomal protein L11P methyltransferase [Rhodopseudomonas
           palustris BisB5]
          Length = 295

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYN 250
               + +L+ VL A  G    +L+L  G G  ++  A+   + VLA +I + SV  A+ N
Sbjct: 138 TRGCLTLLDLVLRA--GPPRSVLDLGTGTGVLAIAAAKALRQPVLATDIDRQSVAVAKEN 195

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
              N V N+       +           F      D+       I  +P R 
Sbjct: 196 ARLNGVGNL------VEAVHATGFSAPVFAAWGPFDL---VLANILANPLRQ 238


>gi|75910339|ref|YP_324635.1| putative methyltransferase [Anabaena variabilis ATCC 29413]
 gi|75704064|gb|ABA23740.1| putative methyltransferase [Anabaena variabilis ATCC 29413]
          Length = 273

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             QG LL+L  G G  ++ L+  F  V+A++     ++ A+   A    NN+  +   ++
Sbjct: 44  NGQGRLLDLGTGPGLIAIPLSTKFQEVVAIDPDPEMLKEAQRQAATAGANNITWLEQGAE 103


>gi|256158848|ref|ZP_05456705.1| putative SAM dependent methyltransferase [Brucella ceti M490/95/1]
 gi|256254229|ref|ZP_05459765.1| putative SAM dependent methyltransferase [Brucella ceti B1/94]
 gi|261221378|ref|ZP_05935659.1| SAM dependent methyltransferase [Brucella ceti B1/94]
 gi|265997339|ref|ZP_06109896.1| SAM dependent methyltransferase [Brucella ceti M490/95/1]
 gi|260919962|gb|EEX86615.1| SAM dependent methyltransferase [Brucella ceti B1/94]
 gi|262551807|gb|EEZ07797.1| SAM dependent methyltransferase [Brucella ceti M490/95/1]
          Length = 381

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 27/186 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 159 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRERE 278
           G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R   
Sbjct: 217 GVASLVAARAGAEVTHVDASKKAILWARENQEMTGLSDKPIRWICEDAMKFVQREERRGS 276

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSLCRDLSILS 336
           F            +  I +DPP  G         + +  P ++  +C      + L+++ 
Sbjct: 277 F------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILSAKPLAVIL 323

Query: 337 TTHTIE 342
           T ++I 
Sbjct: 324 TAYSIR 329


>gi|224584413|ref|YP_002638211.1| hypothetical protein SPC_2669 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|254807142|sp|C0Q8C5|RLMI_SALPC RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|224468940|gb|ACN46770.1| hypothetical protein SPC_2669 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 403

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|20807438|ref|NP_622609.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           tengcongensis MB4]
 gi|38605369|sp|Q8RB66|PRMA_THETN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|20515962|gb|AAM24213.1| Ribosomal protein L11 methylase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 309

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAA 253
              M    L         + ++ CG+G  S+  ++     V   ++ + +V+ AR N+  
Sbjct: 159 TTKMCLQFLEDIVKPGAIVFDVGCGSGILSIAASKLGASYVYGADVDEMAVKIARENVKL 218

Query: 254 NHVNNVKIVRMS 265
           N + NV+I +  
Sbjct: 219 NGLENVEIFQSD 230


>gi|309780804|ref|ZP_07675545.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           sp. 5_7_47FAA]
 gi|308920486|gb|EFP66142.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           sp. 5_7_47FAA]
          Length = 216

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         D+LE+  G+G  + +LA    +V  ++I    V  AR N+
Sbjct: 63  PRVEARVLQELAVRKHE---DVLEVGAGSGYMAALLAHRGRQVTTLDIVPELVAFARDNL 119

Query: 252 AANHVNNVKIVRMS 265
           + N V NV +V  S
Sbjct: 120 SRNGVTNVDVVEAS 133


>gi|297162771|gb|ADI12483.1| putative SAM-dependent methyltransferase [Streptomyces
           bingchenggensis BCW-1]
          Length = 271

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 11/147 (7%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
             LL L C  G  +L  AR    V  ++ ++ +V AAR       + +  + V     E 
Sbjct: 55  KRLLHLQCHMGQDTLSWARRGAEVTGLDFSRAAVRAARTLAEDIGMTDRARFVVSDVYEA 114

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS-- 327
             A+  ER        DI       +   P      +    M++    +     +P +  
Sbjct: 115 PAALDGER-------FDIVYTGLGALVWLPDLLRWANVVSSMLKDGGAVYLAEFHPLTEL 167

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTR 354
           L  D   L   +   +   +D FP+T 
Sbjct: 168 LGEDGKTLEHDYFRTQAQTYD-FPHTY 193


>gi|224493311|sp|Q57QS3|RLMI_SALCH RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
          Length = 403

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|124485745|ref|YP_001030361.1| hypothetical protein Mlab_0923 [Methanocorpusculum labreanum Z]
 gi|124363286|gb|ABN07094.1| protein of unknown function Met10 [Methanocorpusculum labreanum Z]
          Length = 289

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 7/138 (5%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           K  +   + + D     AG T      +  F+Q N G  + +   V          + ++
Sbjct: 103 KASVLFGQPH-DVTFREAGITYTLDPSKVMFSQGNRGEKLRLRSLV-----KPGERIADM 156

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRR 275
           + G G F+L  A     V AVEI   S      NI AN +   V       +E    +  
Sbjct: 157 FAGIGYFTLSAALAGGNVHAVEINPVSFAYLEKNIEANDLAGRVTPELGDCRERLFGIYD 216

Query: 276 EREFNRLKDIDIHSYRFK 293
                  +  D       
Sbjct: 217 RILMGHFEAPDFLKTALD 234


>gi|56413923|ref|YP_150998.1| hypothetical protein SPA1770 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197362846|ref|YP_002142483.1| hypothetical protein SSPA1643 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81360261|sp|Q5PGB6|RLMI_SALPA RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|224493219|sp|B5BBK0|RLMI_SALPK RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|56128180|gb|AAV77686.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094323|emb|CAR59835.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 403

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|16759961|ref|NP_455578.1| hypothetical protein STY1103 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29142267|ref|NP_805609.1| hypothetical protein t1840 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213051500|ref|ZP_03344378.1| hypothetical protein Salmoneentericaenterica_00325 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213425893|ref|ZP_03358643.1| hypothetical protein SentesTyphi_09714 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646087|ref|ZP_03376140.1| hypothetical protein SentesTy_01269 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289829382|ref|ZP_06546994.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|81514998|sp|Q8Z7R6|RLMI_SALTI RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|25305948|pir||AC0628 conserved hypothetical protein STY1103 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502255|emb|CAD08206.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137897|gb|AAO69458.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 403

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|84684942|ref|ZP_01012842.1| hypothetical protein 1099457000245_RB2654_03499 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667277|gb|EAQ13747.1| hypothetical protein RB2654_03499 [Rhodobacterales bacterium
           HTCC2654]
          Length = 402

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 13/120 (10%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             AAT      +L+++   G FSL  LA      LAV+ ++P+++ A     A  V +  
Sbjct: 219 AFAATLSNGARVLDVFSHVGGFSLAALANGATTALAVDGSQPALDLATQGAEATGVAD-- 276

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
             R  +       R+   F+ L  +      F  +  DPP    +   +   ++AY  I 
Sbjct: 277 --RFDT-------RQGDAFDVLTSLGEAGEVFDMVICDPPAFAPNKQALDAGLRAYERIA 327


>gi|294340804|emb|CAZ89199.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Thiomonas sp. 3As]
          Length = 393

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  +   G FSL  LA    +V +V+ + P++  A  ++A N  +  +   + + +  
Sbjct: 220 RVLNCFSYTGGFSLAALAGGAQQVTSVDSSAPTLALAAEHVALNGFDPARAQFIDA-DVN 278

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +RR RE            +F  I +DPP+            +AY  I
Sbjct: 279 ATLRRLRE---------EGAQFDAIVLDPPKFAASPQQVERAARAYKDI 318


>gi|297527378|ref|YP_003669402.1| methyltransferase small [Staphylothermus hellenicus DSM 12710]
 gi|297256294|gb|ADI32503.1| methyltransferase small [Staphylothermus hellenicus DSM 12710]
          Length = 193

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 24/146 (16%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVN-NVKI 261
                 G++L++ CG G   L +A+   R  V  V+I   +V+  +YN   N++   V +
Sbjct: 50  MDIPDNGEVLDVGCGYGVIGLTIAKLNPRLKVYMVDINPLAVKITKYNAKLNNLEKQVSV 109

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           ++  + E                    + RF  I+ +PP S        +V     I Y+
Sbjct: 110 LQGDAYE-----------------PFKNLRFNAIYSNPPLSSGMSTVEKIVLG--AINYL 150

Query: 322 SCNPDSLCRDLSILSTTHTIERLALF 347
              PD     +      + +E+    
Sbjct: 151 --KPDGFAEFVLARGGEYLVEKARGI 174


>gi|297570274|ref|YP_003691618.1| Methyltransferase type 11 [Desulfurivibrio alkaliphilus AHT2]
 gi|296926189|gb|ADH86999.1| Methyltransferase type 11 [Desulfurivibrio alkaliphilus AHT2]
          Length = 326

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +          +L+  CG G  +L LAR   RV AV+ A   +           +NN++ 
Sbjct: 70  LARFHWQPHWTVLDAGCGPGTLALPLARRVHRVTAVDYAAAMLAELSKEQQRQGLNNIRP 129

Query: 262 VRMSSKEFTQAMRRE 276
           V+ + ++  + +  E
Sbjct: 130 VQAAWEDDWEKLAIE 144


>gi|296136809|ref|YP_003644051.1| ribosomal protein L11 methyltransferase [Thiomonas intermedia K12]
 gi|295796931|gb|ADG31721.1| ribosomal protein L11 methyltransferase [Thiomonas intermedia K12]
          Length = 298

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV 256
           LEW LA     Q  +L+  CG+G  ++  A+     V+ V+I   +V A   N AAN V
Sbjct: 156 LEW-LARQTPSQLSVLDYGCGSGILAIAAAKFGAGPVVGVDIDPDAVLATEANAAANDV 213


>gi|261365336|ref|ZP_05978219.1| protein-(glutamine-N5) methyltransferase [Neisseria mucosa ATCC
           25996]
 gi|288566276|gb|EFC87836.1| protein-(glutamine-N5) methyltransferase [Neisseria mucosa ATCC
           25996]
          Length = 287

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 32/181 (17%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +A         D+L  R+   + I       I   R++      V    LI R       
Sbjct: 50  EAIPADIFARLDSLAERRLNGEPIAY-----IIGGREFYGRWFEVCPDVLIPRPE----- 99

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E V+       G + +L  G+G  ++ +A  R    V A +I++ ++  
Sbjct: 100 ------TEHLVEAVIE-HLPKNGRVWDLGTGSGAVAVTVALERKDAEVRASDISRQALVV 152

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR N        V+    S             F+  K      YRF  I  +PP    DD
Sbjct: 153 ARRNAENLGAA-VEFASGS------------WFDTDKTSSEDKYRFDVIVSNPPYIEADD 199

Query: 307 A 307
           +
Sbjct: 200 S 200


>gi|306844419|ref|ZP_07477009.1| SAM dependent methyltransferase [Brucella sp. BO1]
 gi|306275232|gb|EFM56982.1| SAM dependent methyltransferase [Brucella sp. BO1]
          Length = 381

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 55/163 (33%), Gaps = 26/163 (15%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH------MLEWVLAATKGIQGDLLELYCGN 220
           E   +    + +     SF           H      ++   +    G    +L L+   
Sbjct: 159 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSFMDGLIRDAV--KTGRTVKVLNLFGYT 216

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRERE 278
           G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R   
Sbjct: 217 GVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREERRGS 276

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHIL 319
           F            +  I +DPP  G         + +  P ++
Sbjct: 277 F------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV 307


>gi|289167098|ref|YP_003445365.1| hypothetical protein smi_0212 [Streptococcus mitis B6]
 gi|288906663|emb|CBJ21497.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 136

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 196 VHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
            +++   +     +    ++L+   G G  +L LA+    V  V+I++  +E AR     
Sbjct: 21  ANLVCQAVEKQIDLLSDKEILDFGGGTGLLTLPLAKQAKSVTLVDISEKMLEQARLKAEQ 80

Query: 254 NHVNNVKIVRMS-----SKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
             + N++ +         K+    +   R  + + D+D   Y F   
Sbjct: 81  QDIKNIQFLEQDLLKNPLKQEFDLIVVCRVLHHMPDLDAALYCFIIF 127


>gi|302867245|ref|YP_003835882.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302570104|gb|ADL46306.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 201

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 12/118 (10%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +L A       +L+  CG G  +  LA     V+ V+     VEAAR           
Sbjct: 37  ARLLDALVPPGARVLDAGCGTGRVAAALAARGHDVVGVDADPTLVEAARA-----DHPGP 91

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           + +     E   A + E E       D        +    P  G +   +  V A+  
Sbjct: 92  RFLVADLAELDLAAQGEAE-----PFDAAVLAGNVMVFVAP--GTERDVLARVAAHVR 142


>gi|301118196|ref|XP_002906826.1| tRNA wybutosine-synthesizing protein, putative [Phytophthora
           infestans T30-4]
 gi|262108175|gb|EEY66227.1| tRNA wybutosine-synthesizing protein, putative [Phytophthora
           infestans T30-4]
          Length = 940

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAA 253
           ++ E    A  G +G+ +++L+CG G + L    H     V A E    SV A R+N+  
Sbjct: 762 NVTEKARMANIGCRGETIVDLFCGIGYYVLPFLVHGGASFVHACEWNPDSVAALRFNLER 821

Query: 254 NH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDI-HSYRFKTIFVDPPRSGL 304
           NH  +  K+    +++    +    +   L  +          + V  P  G 
Sbjct: 822 NHVADRCKVYLGDNRKSAPTIGAVADRVNLGLLPTSEKAWPLAVQVLKPSGGW 874


>gi|213861414|ref|ZP_03385884.1| hypothetical protein SentesT_28045 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 390

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 217 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 276

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 277 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 315


>gi|168237134|ref|ZP_02662192.1| protein YccW [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736249|ref|YP_002114079.1| protein YccW [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|224493220|sp|B4TSJ2|RLMI_SALSV RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|194711751|gb|ACF90972.1| protein YccW [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289866|gb|EDY29227.1| protein YccW [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 403

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|218903227|ref|YP_002451061.1| hypothetical protein BCAH820_2111 [Bacillus cereus AH820]
 gi|218534807|gb|ACK87205.1| conserved hypothetical protein [Bacillus cereus AH820]
          Length = 237

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +LE ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N    
Sbjct: 28  AYLLLEKLVIQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA--- 84

Query: 255 HVNNVKIVRMSSKEF 269
              +   +   ++ F
Sbjct: 85  --PDAAFIVDDARYF 97


>gi|118477526|ref|YP_894677.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|165870270|ref|ZP_02214926.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167632882|ref|ZP_02391208.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|167638464|ref|ZP_02396741.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|170686532|ref|ZP_02877753.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|177650718|ref|ZP_02933615.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190567980|ref|ZP_03020891.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|196046114|ref|ZP_03113342.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225864058|ref|YP_002749436.1| hypothetical protein BCA_2162 [Bacillus cereus 03BB102]
 gi|227815100|ref|YP_002815109.1| hypothetical protein BAMEG_2511 [Bacillus anthracis str. CDC 684]
 gi|254684670|ref|ZP_05148530.1| hypothetical protein BantC_12545 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254720985|ref|ZP_05182776.1| hypothetical protein BantA1_00850 [Bacillus anthracis str. A1055]
 gi|254737114|ref|ZP_05194818.1| hypothetical protein BantWNA_18329 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743701|ref|ZP_05201386.1| hypothetical protein BantKB_22287 [Bacillus anthracis str. Kruger
           B]
 gi|254751430|ref|ZP_05203467.1| hypothetical protein BantV_03126 [Bacillus anthracis str. Vollum]
 gi|300118201|ref|ZP_07055949.1| hypothetical protein BCSJ1_09923 [Bacillus cereus SJ1]
 gi|118416751|gb|ABK85170.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164714158|gb|EDR19679.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
 gi|167513765|gb|EDR89134.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
 gi|167531694|gb|EDR94359.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
 gi|170669608|gb|EDT20350.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
 gi|172083179|gb|EDT68240.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
 gi|190561035|gb|EDV15009.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
 gi|196023169|gb|EDX61848.1| conserved hypothetical protein [Bacillus cereus 03BB108]
 gi|225785998|gb|ACO26215.1| conserved hypothetical protein [Bacillus cereus 03BB102]
 gi|227007508|gb|ACP17251.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
 gi|298724512|gb|EFI65206.1| hypothetical protein BCSJ1_09923 [Bacillus cereus SJ1]
          Length = 237

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +LE ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N    
Sbjct: 28  AYLLLEKLVLQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA--- 84

Query: 255 HVNNVKIVRMSSKEF 269
              +   +   ++ F
Sbjct: 85  --PDAAFIVDDARYF 97


>gi|328697682|ref|XP_001948506.2| PREDICTED: hypothetical protein LOC100163046 isoform 1
           [Acyrthosiphon pisum]
          Length = 520

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           L++ +CG G+  +  A+  + V+A++I    +E AR+N       + ++ +         
Sbjct: 354 LIDPFCGAGSNVIQFAKTCELVIAIDIDPKKIEIARHNAELYGVADRIQFIIGDYFTLAP 413

Query: 272 AMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            ++ +  F        D+       +    P  G     + + +
Sbjct: 414 TLKGDVVFLSPPWGGPDLMDLEEYKLSYIMPEKGGIKQMMSLTR 457


>gi|328697680|ref|XP_003240407.1| PREDICTED: hypothetical protein LOC100163046 isoform 2
           [Acyrthosiphon pisum]
          Length = 508

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           L++ +CG G+  +  A+  + V+A++I    +E AR+N       + ++ +         
Sbjct: 342 LIDPFCGAGSNVIQFAKTCELVIAIDIDPKKIEIARHNAELYGVADRIQFIIGDYFTLAP 401

Query: 272 AMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            ++ +  F        D+       +    P  G     + + +
Sbjct: 402 TLKGDVVFLSPPWGGPDLMDLEEYKLSYIMPEKGGIKQMMSLTR 445


>gi|312898769|ref|ZP_07758158.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
 gi|310620200|gb|EFQ03771.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
          Length = 408

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 28/142 (19%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV- 256
              +  +   +   +L+ +   G F+L  AR     V AV+I++ +VE    NI  N   
Sbjct: 222 YNRLAVSRLAVGKHVLDCFTHTGAFALNAARGGAVSVTAVDISEEAVERTISNIEKNGFS 281

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS------------GL 304
           + VK V+ +  +    +  E+  +           +  I +DPP              G 
Sbjct: 282 STVKAVQANVFDLLTQLAEEKNRD-----------YDFIILDPPAFTKSGHTLKNAYRGY 330

Query: 305 DDATVGMVQAYPHILYI---SC 323
            +  +  ++  P   Y+   SC
Sbjct: 331 KEINLKAMKILPRGGYLATCSC 352


>gi|258621550|ref|ZP_05716583.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258586168|gb|EEW10884.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 418

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 30/180 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH       ++   N  KI +D       +    +T  Y    +S  Q  
Sbjct: 184 KEGLEEHVGVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ-- 234

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                       +       ++L  +   G F L  L     RV+  ++++P+++ A+ N
Sbjct: 235 ------------SMKYVKGKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKLN 282

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N             +          F  L++      RF  + +DPP+     A + 
Sbjct: 283 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 334


>gi|153828764|ref|ZP_01981431.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148875717|gb|EDL73852.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 418

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH       ++   N  KI +D       +    +T  Y    +S  Q          
Sbjct: 192 GVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ---------- 234

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               +     + ++L  +   G F L  L     RV+  ++++P+++ A++N   N    
Sbjct: 235 ----SMKYVKEKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--- 287

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F  L++      RF  + +DPP+     A + 
Sbjct: 288 -----FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 334


>gi|323490605|ref|ZP_08095810.1| hypothetical protein GPDM_14642 [Planococcus donghaensis MPA1U2]
 gi|323395697|gb|EGA88538.1| hypothetical protein GPDM_14642 [Planococcus donghaensis MPA1U2]
          Length = 200

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 20/107 (18%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I G +L++ CG G   + +A+     +V  V++   ++E A+ N   N ++NV+I 
Sbjct: 54  QNSAIDGPVLDVGCGYGPIGMTVAKISPQKQVHMVDVNTRAIELAKTNAEKNDISNVRIY 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDAT 308
                   +A                   F  I  +PP R+G +   
Sbjct: 114 ESDGLSTVEA-----------------SGFSAILTNPPIRAGKETIF 143


>gi|296164746|ref|ZP_06847310.1| methyltransferase small domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899917|gb|EFG79359.1| methyltransferase small domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 189

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
              G  L+L CG G  ++ LA     V+ V+++  +V  AR       V +  +   +  
Sbjct: 41  PTAGRALDLACGTGLAAVWLALRGLEVVGVDVSPVAVAQARELARRAGVSDRCRFEVVDL 100

Query: 267 KE 268
            +
Sbjct: 101 DD 102


>gi|270004358|gb|EFA00806.1| hypothetical protein TcasGA2_TC003693 [Tribolium castaneum]
          Length = 734

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +  E S+           L             +++ +CG G  ++  A    RV+A++I 
Sbjct: 551 KLDEESWYSVTPEQIAKHLAQRCKCDL-----IVDGFCGAGGNAIQFAFTCKRVIAIDID 605

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
              +E AR N     V + +  +          +  +  F         +Y+ + +
Sbjct: 606 PKKIELARNNAEVYGVADKIDFIVGDFFHLAPGLMADVVFFS-PPWGGPAYKNEVV 660


>gi|222479671|ref|YP_002565908.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
 gi|222452573|gb|ACM56838.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
          Length = 288

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 16/95 (16%)

Query: 212 DLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G F   LA        RV+ V++    VE AR N+  N  + V+      +
Sbjct: 106 TVLDLGSG-GGFDCFLAAREVGPDGRVIGVDMTPEMVERARENVEKNDADTVEFRLGEIE 164

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
               A           D  + +     +    PR 
Sbjct: 165 HLPVA-----------DESVDAIISNCVINLSPRK 188


>gi|149200663|ref|ZP_01877660.1| hypothetical protein LNTAR_15442 [Lentisphaera araneosa HTCC2155]
 gi|149136243|gb|EDM24699.1| hypothetical protein LNTAR_15442 [Lentisphaera araneosa HTCC2155]
          Length = 274

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             L      +   L ++   G  SL +++   +V  ++ AK  V+ AR N  AN ++N++
Sbjct: 97  QWLKDMSKPEIKALNMFAYTGGSSLAMSKGGAQVTHLDAAKGIVDWARLNAEANDISNIR 156

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            +      F       RE  R         ++  + +DPP  G    
Sbjct: 157 WIVDDVNRFLD-----REIRR-------GNKYDALVMDPPSYGRGSK 191


>gi|148643096|ref|YP_001273609.1| methyltransferase [Methanobrevibacter smithii ATCC 35061]
 gi|148552113|gb|ABQ87241.1| predicted methyltransferase [Methanobrevibacter smithii ATCC 35061]
          Length = 245

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A        +++++ G G FS+ +    +  +V ++EI   S    + NI  N +NN+ 
Sbjct: 90  IAKLVEDNETVIDMFAGIGYFSIPIGVHSNAKQVYSIEINPNSFHYLKENIKLNKINNII 149

Query: 261 IVRMSSKEFTQAMRRER 277
            +     + T     +R
Sbjct: 150 PLLGDCMDITPEYSADR 166


>gi|308813696|ref|XP_003084154.1| predicted serine-pyruvate aminotransferase (ISS) [Ostreococcus
           tauri]
 gi|116056037|emb|CAL58570.1| predicted serine-pyruvate aminotransferase (ISS) [Ostreococcus
           tauri]
          Length = 868

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 19/109 (17%)

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              V AV+ ++ ++  A  N   N V + ++ VR  + +F Q                 +
Sbjct: 713 AASVTAVDSSESALAVAAQNAELNGVADKIEFVRADAFDFMQDALDSG----------AA 762

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTT 338
             +  + +DPP+   +   +   +A P   Y+  N     R +++LS  
Sbjct: 763 GSYDVVILDPPKFAPNKTALA--KALPK--YVGLN----KRAMALLSRG 803


>gi|328479937|gb|EGF48991.1| methyltransferase [Lactobacillus rhamnosus MTCC 5462]
          Length = 115

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +++L  GNG   L LAR  D RV  VE+     + AR ++A N + NV +  
Sbjct: 33  AQIKRHSRVVDLAAGNGAVGLFLARKTDNRVTMVELQPRLADMARRSVALNALANVDVHE 92

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               + T+ + ++                  +  +PP
Sbjct: 93  GDLADTTKFVAKD--------------SVDVVTCNPP 115


>gi|222445333|ref|ZP_03607848.1| hypothetical protein METSMIALI_00961 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350106|ref|ZP_05975523.1| methyltransferase [Methanobrevibacter smithii DSM 2374]
 gi|222434898|gb|EEE42063.1| hypothetical protein METSMIALI_00961 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860892|gb|EFC93190.1| methyltransferase [Methanobrevibacter smithii DSM 2374]
          Length = 245

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A        +++++ G G FS+ +    +  +V ++EI   S    + NI  N +NN+ 
Sbjct: 90  IAKLVEDNETVIDMFAGIGYFSIPIGVHSNAKQVYSIEINPNSFHYLKENIKLNKINNII 149

Query: 261 IVRMSSKEFTQAMRRER 277
            +     + T     +R
Sbjct: 150 PLLGDCMDITPEYSADR 166


>gi|150400573|ref|YP_001324339.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
 gi|150013276|gb|ABR55727.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
          Length = 264

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +  T      + +L  G+G  ++V ++   +V A+E+   +   A+ N+  N   N+K 
Sbjct: 27  AIEQTVKPNDIVYDLGTGSGILAMVASQKAKKVYALELDPITCMYAKENLKINDYENIKN 86

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHIL 319
           +        +A   E  F    D+ I       +  +P    L+       ++    I+
Sbjct: 87  I-----NLIEADASEYNFKEQADVIIAELLDTALITEPQVPVLNSIIEKGYLKENGKII 140


>gi|163848559|ref|YP_001636603.1| methyltransferase small [Chloroflexus aurantiacus J-10-fl]
 gi|222526494|ref|YP_002570965.1| methyltransferase small [Chloroflexus sp. Y-400-fl]
 gi|163669848|gb|ABY36214.1| methyltransferase small [Chloroflexus aurantiacus J-10-fl]
 gi|222450373|gb|ACM54639.1| methyltransferase small [Chloroflexus sp. Y-400-fl]
          Length = 207

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L  ++         +L++ CG G   + LAR F    V  V+    +V  AR+N   N 
Sbjct: 45  LLLRLIEPAFPEPQRILDVGCGCGVIGICLARRFPQADVTLVDKDLLAVRYARHNAELNA 104

Query: 256 VNNVKI 261
             NV +
Sbjct: 105 TTNVTV 110


>gi|298709921|emb|CBJ31646.1| MPBQ/MSBQ transferase [Ectocarpus siliculosus]
          Length = 461

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 185 NSFTQPNAGINVHMLEW--VLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEI 239
             F Q        M +W  V+A  +     +L++ CG G  S  LA+       V  + +
Sbjct: 186 KDFIQAKYDFIDEMAKWGGVVAGPETSPKKVLDVGCGVGGTSRYLAKKLGPETSVTGITL 245

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +   VE A        V N K    ++ + T
Sbjct: 246 SPKQVERATQLAEEQGVPNAKFQVTNALDMT 276


>gi|227114020|ref|ZP_03827676.1| hypothetical protein PcarbP_13689 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 273

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +          LL++ CG G+  L +A   ++V  ++ ++  ++ AR    A  + N   
Sbjct: 52  IANMDFSGAKTLLDVGCGPGSVCLNVASRLEQVYGIDYSEGMLDVARRRAEAMGIGNATF 111

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
              +          E ++  L D DI      T+ +D
Sbjct: 112 AHRA---------WEDDWADLPDCDIVVASRSTLVMD 139


>gi|146318503|ref|YP_001198215.1| methylase of polypeptide chain release factors [Streptococcus suis
           05ZYH33]
 gi|146320694|ref|YP_001200405.1| methylase of polypeptide chain release factors [Streptococcus suis
           98HAH33]
 gi|253751629|ref|YP_003024770.1| methyltransferase [Streptococcus suis SC84]
 gi|253753531|ref|YP_003026672.1| methyltransferase [Streptococcus suis P1/7]
 gi|253755644|ref|YP_003028784.1| methyltransferase [Streptococcus suis BM407]
 gi|145689309|gb|ABP89815.1| Methylase of polypeptide chain release factors [Streptococcus suis
           05ZYH33]
 gi|145691500|gb|ABP92005.1| Methylase of polypeptide chain release factors [Streptococcus suis
           98HAH33]
 gi|251815918|emb|CAZ51532.1| putative methyltransferase [Streptococcus suis SC84]
 gi|251818108|emb|CAZ55902.1| putative methyltransferase [Streptococcus suis BM407]
 gi|251819777|emb|CAR45684.1| putative methyltransferase [Streptococcus suis P1/7]
 gi|292558284|gb|ADE31285.1| Modification methylase HemK [Streptococcus suis GZ1]
 gi|319758067|gb|ADV70009.1| methylase of polypeptide chain release factors [Streptococcus suis
           JS14]
          Length = 277

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 21/108 (19%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              +++ +L    G    +L++  G+G  ++ LA+      V+AV+I+  ++  A+ N  
Sbjct: 95  TEELVDLILQENSGASLRILDIGTGSGAIAISLAKARPDWEVVAVDISNDALAVAQENAR 154

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N V+    V     +  QA+                 +F  I  +PP
Sbjct: 155 TNQVS----VHFLESDVLQAVTG---------------KFDIIVSNPP 183


>gi|86608182|ref|YP_476944.1| ribosomal protein L11 methyltransferase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556724|gb|ABD01681.1| ribosomal protein L11 methyltransferase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 313

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 66/182 (36%), Gaps = 21/182 (11%)

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           + Q +  L + R+  + W     +            Q     +K  IC    ++D     
Sbjct: 90  AGQRVPKLRWERIEAEDWSSSWKQH----------WQPQPIGDKLLICPA--WLDP--PP 135

Query: 174 AGRTLIYRQIEN-SF---TQPNAGINVHMLEWVLAATKG--IQGDLLELYCGNGNFSLVL 227
                + R     +F   T P   + +  LE  L +  G      L ++ CG+G  SL  
Sbjct: 136 HPGRHLLRLDPGMAFGTGTHPTTQLCLESLEMRLESWGGDPPAATLADVGCGSGILSLAA 195

Query: 228 AR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           A     RV AV+I   +V+A  +N   N + +  +V   S E    M      N L D+ 
Sbjct: 196 ALLGVKRVFAVDIDPLAVQATMHNRDLNGLTDRIVVAQGSLEQIPEMVDGLVCNILADVI 255

Query: 287 IH 288
           + 
Sbjct: 256 LD 257


>gi|212715539|ref|ZP_03323667.1| hypothetical protein BIFCAT_00437 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660906|gb|EEB21481.1| hypothetical protein BIFCAT_00437 [Bifidobacterium catenulatum DSM
           16992]
          Length = 247

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 22/118 (18%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A     +G  L+L CG G  +L L  A     + A+++ + +++  R N   N V NV+ 
Sbjct: 99  APEPPEEGTFLDLGCGWGPIALTLGFASPKADIWALDVNERALDLTRRNAELNGVRNVRA 158

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
           V                     D       F  I+ +PP R G D     ++   P +
Sbjct: 159 VTA-------------------DEIPSDVTFDLIWSNPPIRVGKDVLHELLMTWLPRL 197


>gi|207856425|ref|YP_002243076.1| hypothetical protein SEN0945 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224493214|sp|B5QZH0|RLMI_SALEP RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|206708228|emb|CAR32528.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 403

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|126657490|ref|ZP_01728646.1| Mg-protoporphyrin IX methyl transferase [Cyanothece sp. CCY0110]
 gi|126621194|gb|EAZ91907.1| Mg-protoporphyrin IX methyl transferase [Cyanothece sp. CCY0110]
          Length = 241

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA--ANH 255
           ++ W+ A        + +  CG G+ SL LA+   ++ A +I++  V  A+         
Sbjct: 62  VVAWLKADENLANLSICDAGCGVGSLSLPLAQEGAKIFASDISEKMVTEAQERAQKTLKE 121

Query: 256 VNNVKIVRMSSKEFT 270
            +NV       +  T
Sbjct: 122 ASNVTFAVQDLESLT 136


>gi|530212|gb|AAB16936.1| aklanonic acid methyltransferase [Streptomyces sp.]
          Length = 220

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 14/129 (10%)

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAA 253
           M   ++  ++ + G+ +L++ CG G      A        V  ++IA   +E AR     
Sbjct: 32  MGRRLVDISEPVTGERVLDIGCGRGACLFPAAEKVGSQGCVHGIDIAPGMIEEARKEATE 91

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             + N+ ++ M ++             R  D+ + SY   ++   P   G       ++ 
Sbjct: 92  RGLRNISLMVMDAE-------TPGFPARSFDLVMGSY---SVIFLPDAVGALARYADILD 141

Query: 314 AYPHILYIS 322
               I + S
Sbjct: 142 HGGRIAFTS 150


>gi|16764439|ref|NP_460054.1| SAM-dependent methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161614725|ref|YP_001588690.1| hypothetical protein SPAB_02477 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552663|ref|ZP_02346415.1| protein YccW [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167994909|ref|ZP_02575999.1| protein YccW [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233454|ref|ZP_02658512.1| protein YccW [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168243870|ref|ZP_02668802.1| protein YccW [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168264159|ref|ZP_02686132.1| protein YccW [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168467521|ref|ZP_02701358.1| protein YccW [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168821813|ref|ZP_02833813.1| protein YccW [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194450482|ref|YP_002045081.1| hypothetical protein SeHA_C1189 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472563|ref|ZP_03078547.1| protein YccW [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197249071|ref|YP_002145949.1| protein YccW [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197263949|ref|ZP_03164023.1| protein YccW [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198242027|ref|YP_002215012.1| hypothetical protein SeD_A1155 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200389297|ref|ZP_03215908.1| protein YccW [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|238911097|ref|ZP_04654934.1| protein YccW [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|81523199|sp|Q8ZQ64|RLMI_SALTY RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|224493213|sp|B5FR09|RLMI_SALDC RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|224493216|sp|B4TE06|RLMI_SALHS RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|224493218|sp|A9N6W0|RLMI_SALPB RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|224493230|sp|B5F1W3|RLMI_SALA4 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|16419596|gb|AAL20013.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|161364089|gb|ABX67857.1| hypothetical protein SPAB_02477 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408786|gb|ACF69005.1| protein YccW [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458927|gb|EDX47766.1| protein YccW [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195630057|gb|EDX48709.1| protein YccW [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197212774|gb|ACH50171.1| protein YccW [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197242204|gb|EDY24824.1| protein YccW [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197936543|gb|ACH73876.1| protein YccW [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199601742|gb|EDZ00288.1| protein YccW [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205322760|gb|EDZ10599.1| protein YccW [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205327288|gb|EDZ14052.1| protein YccW [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332475|gb|EDZ19239.1| protein YccW [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205337232|gb|EDZ23996.1| protein YccW [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205341673|gb|EDZ28437.1| protein YccW [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205347369|gb|EDZ34000.1| protein YccW [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|261246297|emb|CBG24105.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|301157624|emb|CBW17116.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912071|dbj|BAJ36045.1| 23S rRNA methyltransferase I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085295|emb|CBY95079.1| UPF0064 protein yccW [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223696|gb|EFX48759.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322616454|gb|EFY13363.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619705|gb|EFY16580.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322622599|gb|EFY19444.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322629748|gb|EFY26523.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322632530|gb|EFY29276.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322636975|gb|EFY33678.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322641485|gb|EFY38123.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322646048|gb|EFY42564.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322654049|gb|EFY50372.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658581|gb|EFY54843.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322663438|gb|EFY59640.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322670174|gb|EFY66314.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671410|gb|EFY67532.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676766|gb|EFY72833.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682690|gb|EFY78709.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322686370|gb|EFY82352.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323129348|gb|ADX16778.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195673|gb|EFZ80849.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323199819|gb|EFZ84908.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323202812|gb|EFZ87848.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323209083|gb|EFZ94020.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323217957|gb|EGA02672.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323222402|gb|EGA06779.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323226562|gb|EGA10767.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323229758|gb|EGA13881.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323232983|gb|EGA17079.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323240718|gb|EGA24760.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243034|gb|EGA27055.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249803|gb|EGA33705.1| 23S rRNA m(5)C1962 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252725|gb|EGA36563.1| 23S rRNA m(5)C1962 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259140|gb|EGA42784.1| 23S rRNA m(5)C1962 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259962|gb|EGA43590.1| ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323268038|gb|EGA51517.1| 23S rRNA m(5)C1962 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|326622766|gb|EGE29111.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|332987974|gb|AEF06957.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 403

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|28199542|ref|NP_779856.1| hypothetical protein PD1665 [Xylella fastidiosa Temecula1]
 gi|182682279|ref|YP_001830439.1| oxidoreductase [Xylella fastidiosa M23]
 gi|28057657|gb|AAO29505.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
 gi|182632389|gb|ACB93165.1| oxidoreductase [Xylella fastidiosa M23]
 gi|307578556|gb|ADN62525.1| oxidoreductase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 389

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 16/108 (14%)

Query: 211 GDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L C  G F++  A R    V+ V+I +  ++ A+ N   N               
Sbjct: 217 KTVLDLCCNTGGFAVYAALRGAADVVGVDIDQDVIQIAKANAKLNS-------------V 263

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                +   F  L+D  +   ++  + +DP +   D     ++ A   
Sbjct: 264 RPKFLQTDIFPYLRDAAVRGDQYDVVILDPAKMTRDRD--QIINALKK 309


>gi|293433528|ref|ZP_06661956.1| protein-(glutamine-N5) methyltransferase [Escherichia coli B088]
 gi|291324347|gb|EFE63769.1| protein-(glutamine-N5) methyltransferase [Escherichia coli B088]
          Length = 277

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V   + N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLTQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|289643111|ref|ZP_06475241.1| modification methylase, HemK family [Frankia symbiont of Datisca
           glomerata]
 gi|289507075|gb|EFD28044.1| modification methylase, HemK family [Frankia symbiont of Datisca
           glomerata]
          Length = 375

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 53/165 (32%), Gaps = 25/165 (15%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLA 228
           TV  R L        F          ++ W +   +    D    ++L  G+G  +L LA
Sbjct: 124 TVGFRYLTLTVGPGVF--VPRPETETVVGWAIDTVRAAGWDRPVCVDLCTGSGAIALALA 181

Query: 229 RH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
                 RV AV+    ++  A+ N+        + + +   +                ID
Sbjct: 182 DELPGARVYAVDSDPDALLWAKRNVVLTG----RAITVHHADV--------------GID 223

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
           +           P  +G+  AT  +      +  +  NP  LC D
Sbjct: 224 LSGGAASRHGGTPGAAGVMAATEVLADLLGRVDLVVSNPPYLCDD 268


>gi|241895237|ref|ZP_04782533.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Weissella paramesenteroides ATCC 33313]
 gi|241871543|gb|EER75294.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Weissella paramesenteroides ATCC 33313]
          Length = 286

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 88  IEMMATIRLEPLLRA---KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA 144
           +      +LEP +     ++ QIDYL +         + + L      E  +R   A+ A
Sbjct: 11  VREWGDWQLEPYIHDIDERMAQIDYLLTGMMDWNYAQLANNLNTVLEDEKRLRFMVAVRA 70

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
            K   Q +  A        R++      V  R LI RQ               ++EWVLA
Sbjct: 71  IKGG-QPVQYALGHAAFYGREF-----QVDRRVLIPRQE-----------TEELVEWVLA 113

Query: 205 ATK-GIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAA 253
                 +  +L++  G+G  ++ L+  R    V+  +I++ ++  A+ N   
Sbjct: 114 DHPTNTEQHVLDMGTGSGAIAVSLSAERTSWAVVGADISEEALAVAKENAQL 165


>gi|229151104|ref|ZP_04279311.1| Methyltransferase type 11 [Bacillus cereus m1550]
 gi|228632318|gb|EEK88940.1| Methyltransferase type 11 [Bacillus cereus m1550]
          Length = 261

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  INSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  ++++   A
Sbjct: 79  AKVFIKQNGHENVSFVAGNAEDLPFA 104


>gi|255077988|ref|XP_002502574.1| TWY3 methyltransferase [Micromonas sp. RCC299]
 gi|226517839|gb|ACO63832.1| TWY3 methyltransferase [Micromonas sp. RCC299]
          Length = 1107

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV--NNVKIV 262
                 +++L+ G G ++L L RH    +V A E    SV A R N+  N V  N  ++ 
Sbjct: 494 HAAGETVVDLFAGIGYYTLQLLRHAGVAKVFACEWNPNSVAALRRNLRLNGVESNRCEVR 553

Query: 263 RMSSKEFTQAMRREREF 279
              ++        +R  
Sbjct: 554 EGDNRRVAPVGVADRVL 570


>gi|189235563|ref|XP_969535.2| PREDICTED: similar to prip interacting protein, pimt [Tribolium
           castaneum]
          Length = 797

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +  E S+           L             +++ +CG G  ++  A    RV+A++I 
Sbjct: 614 KLDEESWYSVTPEQIAKHLAQRCKCDL-----IVDGFCGAGGNAIQFAFTCKRVIAIDID 668

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
              +E AR N     V + +  +          +  +  F         +Y+ + +
Sbjct: 669 PKKIELARNNAEVYGVADKIDFIVGDFFHLAPGLMADVVFFS-PPWGGPAYKNEVV 723


>gi|156548692|ref|XP_001602591.1| PREDICTED: similar to prip interacting protein. pimt [Nasonia
           vitripennis]
          Length = 577

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 11/130 (8%)

Query: 181 RQIENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           +  + S+       +  H+ E            L++ +CG G  S+  A   +RV A++I
Sbjct: 396 KLDDESWFSVTPEKVAKHIAERCRCDM------LIDAFCGAGGNSISFAFTCERVYAIDI 449

Query: 240 AKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREF---NRLKDIDIHSYRFKTI 295
               +E AR+N     V + ++ +        + +  +  F          I    F   
Sbjct: 450 DPKKIEMARHNARIYGVEDRIEFIIGDFFCLAERLFGDVVFLSPPWGGPSYIQDKSFDIE 509

Query: 296 FVDPPRSGLD 305
            +  P  G+ 
Sbjct: 510 NIMDPHGGIK 519


>gi|156379240|ref|XP_001631366.1| predicted protein [Nematostella vectensis]
 gi|156218405|gb|EDO39303.1| predicted protein [Nematostella vectensis]
          Length = 213

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ +CG G  ++  A   +RV+A++I    ++ AR+N       + ++ V    ++   
Sbjct: 56  IVDAFCGVGGNAIQFAFTCERVIAIDIDPVKIDCARHNAEIYGVADRIEFVLGDFRQIVP 115

Query: 272 AMRREREF 279
            ++ +  F
Sbjct: 116 QLKADVIF 123


>gi|325267200|ref|ZP_08133866.1| 3-demethylubiquinone-9 3-O-methyltransferase [Kingella
           denitrificans ATCC 33394]
 gi|324981333|gb|EGC16979.1| 3-demethylubiquinone-9 3-O-methyltransferase [Kingella
           denitrificans ATCC 33394]
          Length = 237

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYN 250
             IN   L+++    +     ++++ CG G  S  +A R  + VL V++A+ S++ A  +
Sbjct: 33  HDINPLRLDYIDRNAQLAGKTVVDVGCGGGILSESMALRGAESVLGVDMAELSLQTAAAH 92

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
              + V+NV+   +S ++    M    +     ++  H     ++ 
Sbjct: 93  AQTHGVDNVQYRCISVEDLAAEMPHSFDIVSCMEMLEHVPDPASVI 138


>gi|307329829|ref|ZP_07608984.1| methyltransferase [Streptomyces violaceusniger Tu 4113]
 gi|306884558|gb|EFN15589.1| methyltransferase [Streptomyces violaceusniger Tu 4113]
          Length = 195

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+LY G+G   L  L+R    VL VE    +    R N+ A  +   ++    +++ 
Sbjct: 47  ARVLDLYGGSGAVGLEALSRGAGHVLLVESDPRAARTIRQNVRALGLPGAELRTGRAEQT 106

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                                 +  +F+DPP +  D     ++
Sbjct: 107 ITGQAPVT------------GPYDVVFLDPPYAVTDAELREIL 137


>gi|228921559|ref|ZP_04084880.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838076|gb|EEM83396.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 261

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEF 269
           A+  I  N   NV  V  +++  
Sbjct: 79  AKVFIKQNGHENVSFVAGNAENL 101


>gi|240147095|ref|ZP_04745696.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257200743|gb|EEU99027.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 498

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAA 253
             ML  +          +L+ +CG G   +   +A+       ++I  P++E AR N + 
Sbjct: 336 AAMLVSLAKPYLKENAQILDPFCGVGTMLIERDIAQPAREKYGIDIFGPAIEGARENASL 395

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
                +  +     +F      +     + 
Sbjct: 396 AG-EKINFIHRDYFDFKHDYLFDEIITNMP 424


>gi|205352235|ref|YP_002226036.1| hypothetical protein SG0970 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|224493215|sp|B5R6D3|RLMI_SALG2 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|205272016|emb|CAR36860.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627280|gb|EGE33623.1| Ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 403

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|254382316|ref|ZP_04997676.1| methyltransferase [Streptomyces sp. Mg1]
 gi|194341221|gb|EDX22187.1| methyltransferase [Streptomyces sp. Mg1]
          Length = 281

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 52/136 (38%), Gaps = 34/136 (25%)

Query: 181 RQIENSFT-----QPNAGI------NVHMLEWVL---AATKGIQGDLLELYCGNGNFSLV 226
                +F      Q   G+         +++W +    A   ++  +++L  G+G  +L 
Sbjct: 69  HITGRAFFRYLELQVGPGVFVPRPETESVVDWAIHAVRAMDVVEPMIVDLCSGSGAIALA 128

Query: 227 LARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           +A+     RV AVE+++ ++   R N      + V + +  +             + L +
Sbjct: 129 MAQEVPRSRVHAVELSEDALRWTRKNAEG---SRVTVHQGDA------------LSALPE 173

Query: 285 IDIHSYRFKTIFVDPP 300
           +D    +   +  +PP
Sbjct: 174 LD---GQVDLVISNPP 186


>gi|146302781|ref|YP_001197372.1| HemK family modification methylase [Flavobacterium johnsoniae
           UW101]
 gi|146157199|gb|ABQ08053.1| modification methylase, HemK family [Flavobacterium johnsoniae
           UW101]
          Length = 284

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 23/112 (20%)

Query: 195 NVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAAR 248
              ++EW+++  KGI       +L++  G+G  ++ LA++     V A++++K ++E A+
Sbjct: 98  TEELVEWIISENKGIDRKEKIKILDIGTGSGCIAVSLAKNLPNADVYAIDVSKKAIETAK 157

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N   N V NV  +        Q + +  E            ++  I  +PP
Sbjct: 158 RNAIRNDV-NVTFI-------FQDILQAEELK---------CKYDVIVSNPP 192


>gi|293602511|ref|ZP_06684957.1| family 2 glycosyl transferase [Achromobacter piechaudii ATCC 43553]
 gi|292819273|gb|EFF78308.1| family 2 glycosyl transferase [Achromobacter piechaudii ATCC 43553]
          Length = 251

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            EW    T+G    +L++  G G  S  L+R+   V+ V+I+  +V  AR      +  N
Sbjct: 24  YEWCTTHTEG--KRVLDIASGEGYGSYALSRNAKSVVGVDISAEAVNHAR--AKYANKTN 79

Query: 259 VKIVRMSSK 267
           +  +  ++ 
Sbjct: 80  LTFIEGNAA 88


>gi|227875210|ref|ZP_03993352.1| possible polypeptide chain release factor methyltransferase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844115|gb|EEJ54282.1| possible polypeptide chain release factor methyltransferase
           [Mobiluncus mulieris ATCC 35243]
          Length = 330

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 25/183 (13%)

Query: 173 VAGRTLIYRQIENSFTQPNAG---INVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLA 228
           +  R L  R     F         +    +E       +GI   +L+L CG+G   L +A
Sbjct: 78  MYFRGLKLRARPGVFV-VRPETEWVAEAGIETAQVWGAQGIPPQVLDLGCGSGALGLAVA 136

Query: 229 RHFDRVL--AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--- 283
                 +  +V+I+  +V   + N     +   +++   + +    +      +RL    
Sbjct: 137 AEVADTVLTSVDISPEAVALTQENADLCGIK-ARVILADATDLGGLISALTADSRLAPHE 195

Query: 284 -DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342
            D    +   +      P    ++      +A P    I  NP             + IE
Sbjct: 196 TDRKAAATEGECQTEAAPHESENNGANET-KATPKFHVIVTNP------------PYVIE 242

Query: 343 RLA 345
            + 
Sbjct: 243 TVT 245


>gi|204930773|ref|ZP_03221646.1| protein YccW [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204320232|gb|EDZ05436.1| protein YccW [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 403

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|108762676|ref|YP_630223.1| hypothetical protein MXAN_1988 [Myxococcus xanthus DK 1622]
 gi|108466556|gb|ABF91741.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 398

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 17/120 (14%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A +  +GD L+L+  +G F+L L+R    VLAVE  + +   A+ N  AN   NV + 
Sbjct: 219 LRAGELARGDALDLFSYHGGFALSLSRTCTSVLAVEQDEKAAARAKANAEANGRANVTVE 278

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVGMVQAYPH 317
             ++            F+ L+  D    RF T+ +DPP     R GL  A     +    
Sbjct: 279 NANA------------FDVLRRFDTSGRRFDTVVLDPPGLAKRREGLATALRAYHELNLR 326


>gi|11497832|ref|NP_069054.1| L-isoaspartyl protein carboxyl methyltransferase PimT, putative
           [Archaeoglobus fulgidus DSM 4304]
 gi|2650427|gb|AAB91017.1| L-isoaspartyl protein carboxyl methyltransferase PimT, putative
           [Archaeoglobus fulgidus DSM 4304]
          Length = 247

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 56/179 (31%), Gaps = 29/179 (16%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG--- 193
           R    LH     I L            +DY DE  T     + YR         N     
Sbjct: 18  RFEGKLHTHHGIINLEE-------LRGKDYGDEVRT--HLGVKYRIAPF-----NPADFF 63

Query: 194 ---------INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA--RHFDRVLAVEIAK 241
                    I    +  ++A T      L+ +   G+G  +  LA    +  V+ VE   
Sbjct: 64  RHFKRGATPIMPKDIGAIIAYTGLSPDSLIFDAGTGSGILAAYLAYFNKYGEVVTVEKRP 123

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              + AR N     + N+  +   +     +++ E +   L   D  ++  K   +  P
Sbjct: 124 DFAKIARENFRTAGLKNIHQIVGDALAVADSLKVEFDLITLDMKDDVAFIRKAKEILKP 182


>gi|283787004|ref|YP_003366869.1| DNA methyltransferase [Citrobacter rodentium ICC168]
 gi|282950458|emb|CBG90120.1| putative DNA methyltransferase [Citrobacter rodentium ICC168]
          Length = 296

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 7/116 (6%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           +    A+++KI  D     +R+      L       S  Q    +    + W +A     
Sbjct: 12  RPQLSADESKIPWDEPAFSQRMLENH--LSQEHDWASRRQT---VIEQQVTW-IARQLPA 65

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              +L+L CG G ++ +LA        V+ +  S+E AR       + N+  +   
Sbjct: 66  GARILDLGCGPGFYTRLLAERGFHCTGVDFSPASIEWARQQAQTTGL-NMDYIHQD 120


>gi|281337792|gb|EFB13376.1| hypothetical protein PANDA_013430 [Ailuropoda melanoleuca]
          Length = 852

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    ++ AR N     + + ++ +         
Sbjct: 693 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLAS 752

Query: 272 AMRREREF--NRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            ++ +  F        D   +  F    +  P     +     +    +I+Y
Sbjct: 753 HLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGYPLEGLSQKITN--NIVY 802


>gi|302554402|ref|ZP_07306744.1| RsmD family RNA methyltransferase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472020|gb|EFL35113.1| RsmD family RNA methyltransferase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 195

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L  L+R     L VE    +    R N+ +  +   ++    +++  
Sbjct: 49  RVLDLYAGSGAVGLEALSRGASHTLLVEADPRATRTVRDNVKSLGLPGAEVRSGKAEQII 108

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +                    +  +F+DPP +  DD    ++
Sbjct: 109 RT-------------PPPGDPYDLVFLDPPYAVTDDDLREIL 137


>gi|302346617|ref|YP_003814915.1| ribosomal protein L11 methyltransferase [Prevotella melaninogenica
           ATCC 25845]
 gi|302150599|gb|ADK96860.1| ribosomal protein L11 methyltransferase [Prevotella melaninogenica
           ATCC 25845]
          Length = 289

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
              M+  +L      +  +L+  CG G   +V A+     V++ +I + SV  A +N   
Sbjct: 138 TTQMIVSLLLNQDLKEKRVLDCGCGTGILGIVAAKCGAKEVVSYDIDEWSVRNAEHNAEL 197

Query: 254 NHVN 257
           N V 
Sbjct: 198 NGVE 201


>gi|229523543|ref|ZP_04412948.1| hypothetical protein VCA_001109 [Vibrio cholerae bv. albensis
           VL426]
 gi|297578940|ref|ZP_06940868.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|229337124|gb|EEO02141.1| hypothetical protein VCA_001109 [Vibrio cholerae bv. albensis
           VL426]
 gi|297536534|gb|EFH75367.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 418

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH       ++   N  KI +D       +    +T  Y    +S  Q          
Sbjct: 192 GVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ---------- 234

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               +       ++L  +   G F L  L     RV+  ++++P+++ A++N   N    
Sbjct: 235 ----SMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--- 287

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F  L++      RF  + +DPP+     A + 
Sbjct: 288 -----FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 334


>gi|220934410|ref|YP_002513309.1| modification methylase, HemK family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995720|gb|ACL72322.1| modification methylase, HemK family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 303

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 33/137 (24%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           YVDER+ V  R+ I   IE  F                         +L+L  G+G   +
Sbjct: 102 YVDERVLV-PRSPIAELIEQGF--------------APWIDPERVERVLDLCTGSGCIGI 146

Query: 226 VLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
             A  F   RV   +I+  ++  AR NI  + V     VR    +  + +  ER      
Sbjct: 147 ACAHAFPDARVDLSDISPDALAVARENIRRHGV--ADRVRAIRSDLFEGLAGER------ 198

Query: 284 DIDIHSYRFKTIFVDPP 300
                   +  I  +PP
Sbjct: 199 --------YDLIVSNPP 207


>gi|119477214|ref|ZP_01617450.1| hypothetical protein GP2143_02789 [marine gamma proteobacterium
           HTCC2143]
 gi|119449577|gb|EAW30815.1| hypothetical protein GP2143_02789 [marine gamma proteobacterium
           HTCC2143]
          Length = 333

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
            E  +A   G +  +L+  CG G  ++  AR    +V+AV+ +   ++ A+     N   
Sbjct: 37  YEKSIAEVVGPEQSVLDFGCGTGILAMFAARSGAKKVIAVDRSPF-IKTAKDIAQQNGFE 95

Query: 258 NVKIVRMS 265
           N+      
Sbjct: 96  NIDFYHDD 103


>gi|255745742|ref|ZP_05419690.1| hypothetical protein VCH_002104 [Vibrio cholera CIRS 101]
 gi|224493308|sp|A5F8G8|RLMI_VIBC3 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|224493309|sp|Q9KSA5|RLMI_VIBCH RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|255736817|gb|EET92214.1| hypothetical protein VCH_002104 [Vibrio cholera CIRS 101]
          Length = 397

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH       ++   N  KI +D       +    +T  Y    +S  Q          
Sbjct: 171 GVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ---------- 213

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               +     + ++L  +   G F L  L     RV+  ++++P+++ A++N   N    
Sbjct: 214 ----SMKYVKEKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--- 266

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F  L++      RF  + +DPP+     A + 
Sbjct: 267 -----FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 313


>gi|83591958|ref|YP_425710.1| Mg-protoporphyrin IX methyl transferase [Rhodospirillum rubrum ATCC
           11170]
 gi|83574872|gb|ABC21423.1| Magnesium protoporphyrin O-methyltransferase [Rhodospirillum rubrum
           ATCC 11170]
          Length = 236

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA-N 254
             +L W+     G    LL+  CG G+F++  AR    V+A++I+   ++ AR   A   
Sbjct: 50  ETLLSWLPDDLSGT--RLLDAGCGTGSFAVEAARRGASVVAIDISPTLIDLARERAAEVT 107

Query: 255 HVNNVKIVRMSSKE 268
               ++       +
Sbjct: 108 GPGRIEFRVGDMLD 121


>gi|15641366|ref|NP_230998.1| hypothetical protein VC1354 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121588003|ref|ZP_01677755.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728764|ref|ZP_01681778.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147673309|ref|YP_001216914.1| hypothetical protein VC0395_A0968 [Vibrio cholerae O395]
 gi|153818349|ref|ZP_01971016.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822070|ref|ZP_01974737.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|183179353|ref|ZP_02957564.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227081525|ref|YP_002810076.1| hypothetical protein VCM66_1309 [Vibrio cholerae M66-2]
 gi|229505064|ref|ZP_04394574.1| hypothetical protein VCF_000270 [Vibrio cholerae BX 330286]
 gi|229511266|ref|ZP_04400745.1| hypothetical protein VCE_002673 [Vibrio cholerae B33]
 gi|229518384|ref|ZP_04407828.1| hypothetical protein VCC_002408 [Vibrio cholerae RC9]
 gi|229608068|ref|YP_002878716.1| hypothetical protein VCD_002986 [Vibrio cholerae MJ-1236]
 gi|254848476|ref|ZP_05237826.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298498561|ref|ZP_07008368.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655847|gb|AAF94512.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547744|gb|EAX57835.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121628941|gb|EAX61394.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|126511096|gb|EAZ73690.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520403|gb|EAZ77626.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146315192|gb|ABQ19731.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|183012764|gb|EDT88064.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|227009413|gb|ACP05625.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227013271|gb|ACP09481.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229345099|gb|EEO10073.1| hypothetical protein VCC_002408 [Vibrio cholerae RC9]
 gi|229351231|gb|EEO16172.1| hypothetical protein VCE_002673 [Vibrio cholerae B33]
 gi|229357287|gb|EEO22204.1| hypothetical protein VCF_000270 [Vibrio cholerae BX 330286]
 gi|229370723|gb|ACQ61146.1| hypothetical protein VCD_002986 [Vibrio cholerae MJ-1236]
 gi|254844181|gb|EET22595.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297542894|gb|EFH78944.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 418

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH       ++   N  KI +D       +    +T  Y    +S  Q          
Sbjct: 192 GVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ---------- 234

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               +     + ++L  +   G F L  L     RV+  ++++P+++ A++N   N    
Sbjct: 235 ----SMKYVKEKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--- 287

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F  L++      RF  + +DPP+     A + 
Sbjct: 288 -----FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 334


>gi|325964479|ref|YP_004242385.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470566|gb|ADX74251.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 197

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS------ 266
           + +L CG G  SL+L     RV  V+++   V+ AR   A   +   + V   +      
Sbjct: 48  VADLGCGTGTLSLLLGGAGHRVQGVDLSGKMVDIARAKAARGGIA-AEFVVGDASLPPLP 106

Query: 267 -KEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
              F   + R   +  L D D     +  + 
Sbjct: 107 PASFDVVLARHVLWA-LPDPDAAVGHWARLL 136


>gi|320450558|ref|YP_004202654.1| ribosomal protein L11 methyltransferase [Thermus scotoductus SA-01]
 gi|320150727|gb|ADW22105.1| ribosomal protein L11 methyltransferase [Thermus scotoductus SA-01]
          Length = 254

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            LA        +L+L  G+G  ++  A+   + L V+I +  +  A  N   N V  V+ 
Sbjct: 113 ALARHLRPGERVLDLGTGSGILAIAAAKLGGKALGVDIDETVLPQAEENARRNGV-GVRF 171

Query: 262 VRMSSKEFTQ 271
           +  S +E   
Sbjct: 172 LPGSLEEALP 181


>gi|291536635|emb|CBL09747.1| Putative RNA methylase family UPF0020 [Roseburia intestinalis
           M50/1]
          Length = 498

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAA 253
             ML  +          +L+ +CG G   +   +A+       ++I  P++E AR N + 
Sbjct: 336 AAMLVSLAKPYLKENAQILDPFCGVGTMLIERDIAQPAREKYGIDIFGPAIEGARENASL 395

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
                +  +     +F      +     + 
Sbjct: 396 AG-EKINFIHRDYFDFKHDYLFDEIITNMP 424


>gi|218897967|ref|YP_002446378.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus G9842]
 gi|218540874|gb|ACK93268.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus G9842]
          Length = 261

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGQDLQYVVQQVASRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEE 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  ++++   A
Sbjct: 79  AKGFIKQNGHGNVSFVVGNAEDLPFA 104


>gi|254225351|ref|ZP_04918963.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125622192|gb|EAZ50514.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 418

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH       ++   N  KI +D       +    +T  Y    +S  Q          
Sbjct: 192 GVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ---------- 234

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               +     + ++L  +   G F L  L     RV+  ++++P+++ A++N   N    
Sbjct: 235 ----SMKYVKEKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--- 287

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F  L++      RF  + +DPP+     A + 
Sbjct: 288 -----FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 334


>gi|153213502|ref|ZP_01948813.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124115966|gb|EAY34786.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 418

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH       ++   N  KI +D       +    +T  Y    +S  Q          
Sbjct: 192 GVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ---------- 234

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               +     + ++L  +   G F L  L     RV+  ++++P+++ A++N   N    
Sbjct: 235 ----SMKYVKEKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--- 287

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F  L++      RF  + +DPP+     A + 
Sbjct: 288 -----FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 334


>gi|116495718|ref|YP_807452.1| 16S RNA G1207 methylase RsmC [Lactobacillus casei ATCC 334]
 gi|116105868|gb|ABJ71010.1| 16S rRNA m(2)G 1207 methyltransferase [Lactobacillus casei ATCC
           334]
          Length = 198

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 21/121 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
             ++  +LA      G +L++  G G   L LA+HF   +V   ++ + ++  A+ N   
Sbjct: 46  RVLIATILAEELP-TGPILDVGTGYGPIGLALAKHFPDRQVTMSDVNERALALAQRNATD 104

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++NV IV  S                    D    +F  I  +PP         G++ 
Sbjct: 105 NDISNVTIVESSM------------------YDQIDGQFGVIVTNPPIRAGKTIVSGILA 146

Query: 314 A 314
            
Sbjct: 147 G 147


>gi|20093603|ref|NP_613450.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
 gi|19886465|gb|AAM01380.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
          Length = 182

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VK 260
           V AA       +++   GNG  ++  A     VLAV++    ++ AR N     V + ++
Sbjct: 32  VRAAGVEEGDFVVDAGTGNGVVAIAAAEMGCEVLAVDVDPEMIDMARRNAEEYGVEDSIE 91

Query: 261 IVRMSSKEFTQ 271
            V   ++E  +
Sbjct: 92  FVVADARELPE 102


>gi|189501124|ref|YP_001960594.1| Mg-protoporphyrin IX methyl transferase [Chlorobium
           phaeobacteroides BS1]
 gi|189496565|gb|ACE05113.1| magnesium protoporphyrin O-methyltransferase [Chlorobium
           phaeobacteroides BS1]
          Length = 233

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y +E+L+    T+          Q +A +     EW+          +L+  CG G FS+
Sbjct: 32  YGNEKLSTVRTTVR---------QGHAVMMDKAFEWLQQLNLPEDATILDAGCGTGLFSV 82

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKD 284
            LA +   V AV+IA   V  +R    A  +   +     + +E          F+ L  
Sbjct: 83  RLAGNGYHVKAVDIAAQMVNKSREEATAKGLQEKIDFEVNTIEEVKGMYDAVVCFDVLIH 142

Query: 285 IDIHSY 290
                +
Sbjct: 143 YPAEGF 148


>gi|186685917|ref|YP_001869113.1| methyltransferase type 12 [Nostoc punctiforme PCC 73102]
 gi|186468369|gb|ACC84170.1| Methyltransferase type 12 [Nostoc punctiforme PCC 73102]
          Length = 273

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                   QG LL+L  G G  S+ L   F+ V+A++     +  A+   AA   NN+  
Sbjct: 38  AEIFNLNGQGRLLDLGTGPGLISIPLRTQFEEVVAIDPDPEMIAEAKRQAAAVGANNITW 97

Query: 262 VRMSSK 267
           +   ++
Sbjct: 98  LEQGAE 103


>gi|332520340|ref|ZP_08396802.1| hypothetical protein CHP00095 [Lacinutrix algicola 5H-3-7-4]
 gi|332043693|gb|EGI79888.1| hypothetical protein CHP00095 [Lacinutrix algicola 5H-3-7-4]
          Length = 410

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 14/106 (13%)

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKE 268
             +L+++   G FS+  LA     V +++I+K +++ A  N   N+ +   K +   +  
Sbjct: 238 KTVLDVFSYAGGFSVHALANGAKEVTSLDISKQALDIAYQNGKLNNYSGTHKTIADDA-- 295

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                     F  LK +  +   F  + +DPP      + + + + 
Sbjct: 296 ----------FVALKKLIKNKQTFDVVVIDPPSFAKQQSEIELAKK 331


>gi|312140464|ref|YP_004007800.1| hypothetical protein REQ_31160 [Rhodococcus equi 103S]
 gi|311889803|emb|CBH49120.1| conserved hypothetical protein [Rhodococcus equi 103S]
          Length = 173

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 15/102 (14%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+LY G+G   L  L+R    VL VE    +    + N+AA  ++   +VR +      
Sbjct: 32  VLDLYAGSGALGLEALSRGAAHVLLVESDAKAAAVVKQNVAAVGLSGA-VVRTAPVAAVV 90

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
               EREF               +  DPP +  ++A   ++ 
Sbjct: 91  GGAAEREF-------------DVVLADPPYAVTEEAVTSVLS 119


>gi|289192212|ref|YP_003458153.1| protein of unknown function Met10 [Methanocaldococcus sp. FS406-22]
 gi|288938662|gb|ADC69417.1| protein of unknown function Met10 [Methanocaldococcus sp. FS406-22]
          Length = 248

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A        +++++ G G F++ LA++     V A+E    +      NI  N +NNV 
Sbjct: 88  MAFISNKNEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPIAYHYLCENIKLNKLNNVI 147

Query: 261 IVRMSSKEF 269
            +   ++E 
Sbjct: 148 PILADNREV 156


>gi|269961725|ref|ZP_06176085.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833508|gb|EEZ87607.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 239

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           LL++ CG G  ++ +A+  D  + ++IA+  ++ A+    A  ++N+  ++  + +F+
Sbjct: 30  LLDVCCGTGIVTIPVAKKLDNAVGIDIAEGMLKHAKR--KAQGLDNLSFLQQDATQFS 85


>gi|229190991|ref|ZP_04317981.1| Methyltransferase type 11 [Bacillus cereus ATCC 10876]
 gi|228592389|gb|EEK50218.1| Methyltransferase type 11 [Bacillus cereus ATCC 10876]
          Length = 261

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  +++    A
Sbjct: 79  AKVFIKQNGHENVSFVAGNAENLPFA 104


>gi|258404841|ref|YP_003197583.1| methyltransferase small [Desulfohalobium retbaense DSM 5692]
 gi|257797068|gb|ACV68005.1| methyltransferase small [Desulfohalobium retbaense DSM 5692]
          Length = 249

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 202 VLAATKGIQGDLLELYCGNGN--FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-N 258
              +       +L+L  G G   F L L +   ++  V+     V AAR N A   +   
Sbjct: 30  ACFSPAPTGTQVLDLGAGCGVVGFGLALRQPGIQLTGVDCNPEMVAAARENAARLGLEQR 89

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V   +              R     +    F  +  +PP
Sbjct: 90  AVFVEADAALV-----------RDTATPLDPESFPLVVCNPP 120


>gi|182412488|ref|YP_001817554.1| methyltransferase small [Opitutus terrae PB90-1]
 gi|177839702|gb|ACB73954.1| methyltransferase small [Opitutus terrae PB90-1]
          Length = 271

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 17/157 (10%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           +++ R       +++R    +F    A      +  +      + G  ++   G G  ++
Sbjct: 10  HLEAREMKGLGDVMFRHPPGTFALTPASAIA--IHAITDHQSLLHGRGIDWGSGVGCLAI 67

Query: 226 VLAR--HFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRL 282
           V A+    + VL +E+  P+V  AR N   N        +   S          R  +  
Sbjct: 68  VAAKVPSVEFVLGLELYGPNVRTARDNAVCNGVAERTDFLCSDS-------YAPRLPDDR 120

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           + +++ + R + I  +PP S  DD        +  I+
Sbjct: 121 EKLELLAGRTEFILANPPSSEGDDGF-----EFRRIV 152


>gi|167837570|ref|ZP_02464453.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           thailandensis MSMB43]
          Length = 217

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++LE+  G+G  + +LA    RV  VEI     + A  N+
Sbjct: 63  PRVEARILQELAVKKHE---NVLEIGAGSGYMAALLAARGQRVTTVEIDPDLAKFAEENL 119

Query: 252 AANHVNNVKIVRMS 265
             N V N ++V   
Sbjct: 120 KKNGVTNAEVVLGD 133


>gi|145225050|ref|YP_001135728.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
 gi|145217536|gb|ABP46940.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
          Length = 214

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 1/112 (0%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     I G +L++ CG G  +++L      VL V+ A  +VE AR+N     V + +  
Sbjct: 37  IERAGLITGRVLDVGCGTGERTILLTAAGYDVLGVDGAPSAVEQARHNAKTR-VVDARFD 95

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
              + +       +   +            +       R+    + V ++  
Sbjct: 96  VADALDLGDEPAYDTIIDSALFHIFDDADREKYVRSLGRATAPGSVVHLLAL 147


>gi|121635723|ref|YP_975968.1| hemk protein [Neisseria meningitidis FAM18]
 gi|120867429|emb|CAM11201.1| hemk protein [Neisseria meningitidis FAM18]
          Length = 423

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/318 (20%), Positives = 110/318 (34%), Gaps = 57/318 (17%)

Query: 44  RMRAEFHIWHDGDDLYH-IMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRA 102
           R  A F++W+    +     F  + KER         +   + + +     + L  L + 
Sbjct: 113 RYGAGFYLWYAAFAVATIGTFAGKNKER-------KAASAADGIKMTFDEWLGLSKLPKN 165

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
           +   +    S+  +  +       + D  R+ A RL       +    L+G         
Sbjct: 166 EARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPVAYLLGW-------- 217

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            R++   R  V    LI R               H++E VLA      G + +L  G+G 
Sbjct: 218 -REFYGRRFAVNPNVLIPRPE-----------TEHLVEAVLAR-LPENGRVWDLGTGSGA 264

Query: 223 FSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
            ++ +A  R    V A +I+ PS+E AR N A      V+    S   F   M  E    
Sbjct: 265 VAVTVALERPDAFVRASDISPPSLETARKNAADLGAR-VEFAHGS--WFDTDMPSE---- 317

Query: 281 RLKDIDIHSYRFKTIFVDPP--RSGLDDATVGMVQAYPHILY------ISCNPDSLCRDL 332
                     ++  I  +PP   +G    + G ++  P I        +SC   +L +  
Sbjct: 318 ---------GKWDIIVSNPPYIENGDKHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGA 367

Query: 333 -SILSTTHTIERLALFDQ 349
              L+    +     FDQ
Sbjct: 368 PDRLAEGGFLLLEHGFDQ 385


>gi|29833736|ref|NP_828370.1| methyltransferas [Streptomyces avermitilis MA-4680]
 gi|29610860|dbj|BAC74905.1| putative methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 221

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 18/103 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +   +         ++L+L  G+G  ++  AR   RV AV+I++ +V  AR N       
Sbjct: 25  LARALRREDIDTSTEVLDLGTGSGALAVHAARLGARVTAVDISRRAVLTARLNALLAG-- 82

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             + V +   + T A              +    +  +  +PP
Sbjct: 83  --RRVTVRRGDLTAA--------------VPGRSYDLVVSNPP 109


>gi|516113|gb|AAA87622.1| aklanonic acid methyltransferase [Streptomyces sp.]
          Length = 194

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 14/129 (10%)

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAA 253
           M   ++  ++ + G+ +L++ CG G      A        V  ++IA   +E AR     
Sbjct: 6   MGRRLVDISEPVTGERVLDIGCGRGACLFPAAEKVGSQGCVHGIDIAPGMIEEARKEATE 65

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             + N+ ++ M ++             R  D+ + SY   ++   P   G       ++ 
Sbjct: 66  RGLRNISLMVMDAE-------TPGFPARSFDLVMGSY---SVIFLPDAVGALARYADILD 115

Query: 314 AYPHILYIS 322
               I + S
Sbjct: 116 HGGRIAFTS 124


>gi|325696482|gb|EGD38372.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           SK160]
          Length = 276

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 48/242 (19%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           +  L  E++A       L      ++ L+        T    +L  +  +E   +L+   
Sbjct: 7   LAELEQELVAAGEEAESLSFVYRALNKLS-------FTDFVLKLRTEVSQEDRKQLKAI- 58

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                Q QL+       I    D++   L V  R LI R                ++E +
Sbjct: 59  -----QEQLLAHKPAQYIIGSSDFLGLSLKVDERVLIPRPE-----------TEELVELI 102

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L+        +L++  G+G  +L LA  R   ++ A +++  ++  A  N    +++ + 
Sbjct: 103 LSENPESSLSVLDIGTGSGAIALALANSRPDWKITASDLSNDALALAAENAQFCNLS-LT 161

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPH 317
            V+    E                    S  F  I  +PP    +  D+  + ++ + PH
Sbjct: 162 FVQSDCFEAI------------------SGSFDIIVSNPPYISEADKDEVGLNVLTSEPH 203

Query: 318 IL 319
           + 
Sbjct: 204 MA 205


>gi|306818472|ref|ZP_07452195.1| protein-(glutamine-N5) methyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|304648645|gb|EFM45947.1| protein-(glutamine-N5) methyltransferase [Mobiluncus mulieris ATCC
           35239]
          Length = 330

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 25/183 (13%)

Query: 173 VAGRTLIYRQIENSFTQPNAG---INVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLA 228
           +  R L  R     F         +    +E       +GI   +L+L CG+G   L +A
Sbjct: 78  MYFRGLKLRARPGVFV-VRPETEWVAEAGIETAQVWGAQGIPPQVLDLGCGSGALGLAVA 136

Query: 229 RHFDRVL--AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--- 283
                 +  +V+I+  +V   + N     +   +++   + +    +      +RL    
Sbjct: 137 AEVADTVLTSVDISPEAVALTQENADLCGIK-ARVILADATDLGGLISALTADSRLAPHE 195

Query: 284 -DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342
            D    +   +      P    ++      +A P    I  NP             + IE
Sbjct: 196 TDRKAAATEGECQTEAAPHESENNGANET-KATPKFHVIVTNP------------PYVIE 242

Query: 343 RLA 345
            + 
Sbjct: 243 TVT 245


>gi|288802228|ref|ZP_06407668.1| ribosomal protein L11 methyltransferase [Prevotella melaninogenica
           D18]
 gi|288335195|gb|EFC73630.1| ribosomal protein L11 methyltransferase [Prevotella melaninogenica
           D18]
          Length = 289

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
              M+  +L      +  +L+  CG G   +V A+     V++ +I + SV  A +N   
Sbjct: 138 TTQMIVSLLLNQDLKEKRVLDCGCGTGILGIVAAKCGAKEVVSYDIDEWSVRNAEHNAEL 197

Query: 254 NHVN 257
           N V 
Sbjct: 198 NGVE 201


>gi|254000493|ref|YP_003052556.1| type 12 methyltransferase [Methylovorus sp. SIP3-4]
 gi|253987172|gb|ACT52029.1| Methyltransferase type 12 [Methylovorus sp. SIP3-4]
          Length = 831

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 52/153 (33%), Gaps = 13/153 (8%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +  + L      + ++L++ C  G   + L+   +R   ++     +E A+   A   
Sbjct: 666 ARLQAYGLDPYLSPEHNVLDIGCNIGLIGMGLSPRINRYHGIDSNPALIEIAQILTAGRG 725

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N +    S  +  Q +            D+       +++  P +        +++  
Sbjct: 726 IKNCEFQHCSFNDLMQTLPAPY--------DMVLSFAVHVWIGLPMAQYAAHLKTLLKPG 777

Query: 316 PHILYIS----CNPDSLCRDLS-ILSTTHTIER 343
             ++  S     N  S   D+   L   + +++
Sbjct: 778 GTLIIESNRLATNDQSFFSDIQVFLDHGYVLQK 810


>gi|229515727|ref|ZP_04405186.1| hypothetical protein VCB_003385 [Vibrio cholerae TMA 21]
 gi|229529569|ref|ZP_04418959.1| hypothetical protein VCG_002664 [Vibrio cholerae 12129(1)]
 gi|229333343|gb|EEN98829.1| hypothetical protein VCG_002664 [Vibrio cholerae 12129(1)]
 gi|229347496|gb|EEO12456.1| hypothetical protein VCB_003385 [Vibrio cholerae TMA 21]
          Length = 418

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH       ++   N  KI +D       +    +T  Y    +S  Q          
Sbjct: 192 GVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ---------- 234

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               +       ++L  +   G F L  L     RV+  ++++P+++ A++N   N    
Sbjct: 235 ----SMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--- 287

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F  L++      RF  + +DPP+     A + 
Sbjct: 288 -----FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 334


>gi|254168567|ref|ZP_04875410.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|289595689|ref|YP_003482385.1| protein of unknown function Met10 [Aciduliprofundum boonei T469]
 gi|197622401|gb|EDY34973.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|289533476|gb|ADD07823.1| protein of unknown function Met10 [Aciduliprofundum boonei T469]
          Length = 346

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 213 LLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++L+ G G F+L LA+     ++ A E    +      NI  N + N+  +   ++  +
Sbjct: 196 IVDLFAGIGYFTLPLAKSGRAKKIYACEKNPIAYRYLLENIELNQLENIIPLFGDNRNIS 255

Query: 271 QAMRRER 277
                +R
Sbjct: 256 PLKIADR 262


>gi|171912884|ref|ZP_02928354.1| possible oxidoreductase [Verrucomicrobium spinosum DSM 4136]
          Length = 296

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 77/224 (34%), Gaps = 30/224 (13%)

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGR 154
               LL A       L + + + +     H +  D  +      +  L   ++Q  +   
Sbjct: 9   PPHQLLTAHWPAYRLLDTGAGRKLEQWGTHIIQRDEPKAWW---KPTLPKSEWQRAVNQL 65

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENS-----FTQPNAGINVHML--EWVLAATK 207
             KT + +    +   L +    +  R    S     F      +    L  +  + A K
Sbjct: 66  DAKTGVTVGGKEISWTLPLQDLQIRLRLTPGSRHVGAF----PEMAPQWLWLQQKIRAMK 121

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN----HVNNVKIVR 263
             +  +L L+   G  S++ A     V+ V+ ++PS++ AR N+  N    H + V+ + 
Sbjct: 122 DPKPKVLNLFGYTGIASVMAAAAGAEVVHVDASRPSLDWARENLEMNPKTTHSSTVRWML 181

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             +  F Q   R               ++  I +DPP  G    
Sbjct: 182 DDAFAFVQREVR------------RGNQYAGILLDPPSYGKGPK 213


>gi|110636001|ref|YP_676209.1| hypothetical protein Meso_3676 [Mesorhizobium sp. BNC1]
 gi|110286985|gb|ABG65044.1| conserved hypothetical protein 95 [Chelativorans sp. BNC1]
          Length = 334

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 28/200 (14%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
            AW E      DA+       + +GR    +I L      E   +    + Y     SF 
Sbjct: 84  PAWEEAEWEKADAIFTGDTDEEGLGRWRFPRIPLG-----ETWPMRHDGIAYLGRFTSFR 138

Query: 189 QP--NAGIN---VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
                        HM   +  A + I+  +L L+   G  SLV A    +V  V+ +K +
Sbjct: 139 HVGVFPEQATHWEHMRGLIEGARRSIK--VLNLFGYTGLASLVAAEAGAQVTHVDASKKA 196

Query: 244 VEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           +  AR N     +++  ++ +   + +F      ERE  R          +  I +DPP 
Sbjct: 197 IGWARENQEMAGLSDRPIRWIVEDAMKF-----AEREARR-------GNGYDVILLDPPA 244

Query: 302 SGLDDA--TVGMVQAYPHIL 319
            G         + +  P ++
Sbjct: 245 YGRGPKGEVWQLFEDLPELV 264


>gi|330997025|ref|ZP_08320887.1| ribosomal protein L11 methyltransferase [Paraprevotella xylaniphila
           YIT 11841]
 gi|329571523|gb|EGG53205.1| ribosomal protein L11 methyltransferase [Paraprevotella xylaniphila
           YIT 11841]
          Length = 281

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LE +L    G +  +L+  CG G   +    +    V A +I + SV+  + N+  N V 
Sbjct: 135 LERLLGMNLGHK-TVLDAGCGTGVLGIFCTLKGAKSVWAYDIDRWSVDNTKENMQLNGVK 193

Query: 258 NVKIVRMSS 266
           N+++V  ++
Sbjct: 194 NMEVVEGNA 202


>gi|307151947|ref|YP_003887331.1| magnesium protoporphyrin O-methyltransferase [Cyanothece sp. PCC
           7822]
 gi|306982175|gb|ADN14056.1| magnesium protoporphyrin O-methyltransferase [Cyanothece sp. PCC
           7822]
          Length = 228

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI--AANH 255
           +++W+       +  + +  CG G+ S+ LA+   +V A +I++  V  A+     A   
Sbjct: 50  VIDWLKTDGNLAELSICDAGCGVGSLSIPLAQAGAKVWASDISEKMVGEAKEKAKEALGE 109

Query: 256 VNNVKIVRMSSKEF 269
           ++N        +  
Sbjct: 110 IDNPTFSVQDLESL 123


>gi|72161051|ref|YP_288708.1| hypothetical protein Tfu_0647 [Thermobifida fusca YX]
 gi|71914783|gb|AAZ54685.1| Conserved hypothetical protein 95 [Thermobifida fusca YX]
          Length = 193

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 14/104 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L  L+R     L VE  + +      NIA   +   ++V        
Sbjct: 48  RVLDLYAGSGAIGLEALSRGAAHALLVEADRRAAAVIDRNIAQLGLPGARLVVD------ 101

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
              R ER  +R  D       +  +F DPP +  D     +++A
Sbjct: 102 ---RVERVLSRGPD----GGPYDFVFADPPYAIEDREVTAVLEA 138


>gi|163847920|ref|YP_001635964.1| putative SAM-dependent methyltransferase [Chloroflexus aurantiacus
           J-10-fl]
 gi|163669209|gb|ABY35575.1| putative SAM-dependent methyltransferase [Chloroflexus aurantiacus
           J-10-fl]
          Length = 307

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 200 EWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+     +  Q   L L+   G  SL LAR    V  V+ +KP+V  A+ N A   + +
Sbjct: 119 DWLARQVQRRSQPRALVLFGYTGLSSLHLARCGAHVTHVDASKPAVRWAQENQALAELTD 178

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------LDDATV 309
            + +R    +  + + RE              R+  I +DPP  G         L +   
Sbjct: 179 -RPIRWLIDDVGKFVARELR---------RGNRYDLILLDPPVFGRGPNGEIWRLHEQLP 228

Query: 310 GMVQAYPHIL 319
            ++     +L
Sbjct: 229 HLLAQCARLL 238


>gi|323691519|ref|ZP_08105788.1| hypothetical protein HMPREF9475_00650 [Clostridium symbiosum
           WAL-14673]
 gi|323504413|gb|EGB20206.1| hypothetical protein HMPREF9475_00650 [Clostridium symbiosum
           WAL-14673]
          Length = 224

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
               L++ CG G  ++ LA     + AV+ A   +  AR         N+  ++     F
Sbjct: 48  SDKALDIGCGTGVTTIELAGSVAEMTAVDTAPEMLRQAREKAKKAEAGNIDFIQGDM--F 105

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            + ++                 F  +   P ++        +V+   +I
Sbjct: 106 MEELK--------PGTYDAVMIFNVLLYMPDQAAAMKRLQELVKPGGYI 146


>gi|297816932|ref|XP_002876349.1| hypothetical protein ARALYDRAFT_907051 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322187|gb|EFH52608.1| hypothetical protein ARALYDRAFT_907051 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 457

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFT 270
            + +++ G G F++  A+    V A ++   SV   + N   N V+++  V  M +++F 
Sbjct: 208 TVCDMFAGIGPFAIPAAQKGCFVYANDLNPDSVRYLKINAKFNKVDDLICVHNMDARKFF 267

Query: 271 QAM 273
             +
Sbjct: 268 SQL 270


>gi|71909535|ref|YP_287122.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Dechloromonas aromatica RCB]
 gi|71849156|gb|AAZ48652.1| Protein-L-isoaspartate(D-aspartate)
           O-methyltransferase:O-methyltransferase, family 3
           [Dechloromonas aromatica RCB]
          Length = 217

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             I   ML+ ++         +LE+  G+G  + +LA   + V+ VE        A+ N+
Sbjct: 63  PKIEAKMLQELV---LKKTDKVLEIGTGSGYMAALLAARAEHVVTVESRPELAAIAKENL 119

Query: 252 AANHVNNVKIVRMSSKE 268
               V NV +   +  E
Sbjct: 120 ERAGVANVTLEVGNGAE 136


>gi|45358117|ref|NP_987674.1| SAM-binding motif-containing protein [Methanococcus maripaludis S2]
 gi|44920874|emb|CAF30110.1| SAM (and some other nucleotide) binding motif [Methanococcus
           maripaludis S2]
          Length = 200

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 19/120 (15%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNV 259
           V         D+L++ CG G   + +A   + V   ++   SV   R NI  N     N+
Sbjct: 48  VEELELSKDDDVLDVGCGYGVIGISIADEVNSVTMTDLNNRSVGLTRKNIKLNGKSEKNI 107

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           ++ +    E                  +++ ++  I  +PP     +    ++    ++L
Sbjct: 108 EVFQGDLFE-----------------KVNNKKYSVIISNPPIKAGKELIHKIISKGHNLL 150


>gi|4760710|dbj|BAA77395.1| SLL2-S9-protein [Brassica rapa]
          Length = 337

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 61/176 (34%), Gaps = 19/176 (10%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQG 211
             +  ++    D V E +T   + L     +   T    N  +N        A       
Sbjct: 109 HGHTGEVWFGDD-VMEIVTSWTKDLCVEISQKE-TSVSDNGEVNDQ------ADKYLSSW 160

Query: 212 DLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--SKE 268
           ++L+L  GNG     LA+  F  +   + ++ +VE A++    +   N++ +       +
Sbjct: 161 NVLDLGTGNGLLLHQLAKEGFSDLTGTDYSEGAVELAQHLSQRDGFPNIRFMVDDILDTK 220

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
             +  +   +   L  I +H            R    D+   +V     ++  SCN
Sbjct: 221 LERQFKLVMDKGTLDAIGLHPDGPVK------RVMYWDSVSKLVAPGGILVITSCN 270


>gi|88856720|ref|ZP_01131375.1| DNA methyltransferase [marine actinobacterium PHSC20C1]
 gi|88814017|gb|EAR23884.1| DNA methyltransferase [marine actinobacterium PHSC20C1]
          Length = 194

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 202 VLAATKGIQG-DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            L A   I+G  +L+LY G G   L   +R    V  VE    + +A R N     +   
Sbjct: 35  ALEARDAIEGSRVLDLYAGTGALGLESASRGAPHVTLVESNARAADACRKNAT---LIAA 91

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           K  R S      A R  R F     ++    ++  +F+DPP    +D  V  ++ 
Sbjct: 92  KAPRGSKPIILTAARAVRTF-----LETSGDQWDLVFIDPPYELGNDELVAALEL 141


>gi|320160950|ref|YP_004174174.1| hypothetical protein ANT_15460 [Anaerolinea thermophila UNI-1]
 gi|319994803|dbj|BAJ63574.1| hypothetical protein ANT_15460 [Anaerolinea thermophila UNI-1]
          Length = 404

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 13/105 (12%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E +    +G   D+L  +C  G F++  LA   + VL+++ +  ++  A  N+  N +  
Sbjct: 217 ERLQEYCQG--KDVLNCFCYTGGFTVYALAGGANSVLSIDSSDGALALADENVKLNQLP- 273

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                    E          F  L+        F  I +DPP+  
Sbjct: 274 ---------EERNRWLEADVFLALRKFRDEGRSFDLIVLDPPKFA 309


>gi|29828422|ref|NP_823056.1| UbiE family methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29605525|dbj|BAC69591.1| putative methyltransferase-UbiE family [Streptomyces avermitilis
           MA-4680]
          Length = 273

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R   NS          ++L+ +          +L++ CG G  +  LA      R
Sbjct: 20  RSHTWRTAANS--------AAYLLDSLKPHM-----KILDIGCGPGTITADLAALVPDGR 66

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           V  V+ A   +E AR   A   + NV+      
Sbjct: 67  VTGVDHAPDILEQARATAAGRGLRNVEFAVADV 99


>gi|62179602|ref|YP_216019.1| hypothetical protein SC1032 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62127235|gb|AAX64938.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322714071|gb|EFZ05642.1| Ribosomal RNA large subunit methyltransferase I [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 455

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 282 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 341

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 342 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 380


>gi|108764079|ref|YP_633271.1| hypothetical protein MXAN_5117 [Myxococcus xanthus DK 1622]
 gi|14517921|gb|AAK64426.1|AF377337_2 unknown [Myxococcus xanthus]
 gi|108467959|gb|ABF93144.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 328

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 31/147 (21%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH--V 256
            W+L+  +G+   +L L+     F +  +A    R L ++ ++  +E    N   N   V
Sbjct: 146 AWLLSQARGLT--VLNLFSYTCAFGVVAMAGGAKRALNLDASRRVLEWGEENARLNGQTV 203

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--------RSGLDDAT 308
           +    V                F+ LK +      F  +  DPP        R       
Sbjct: 204 DRYDYVAGDV------------FDWLKRLAKKGESFDIVISDPPSFSTTRSGRFSAARDY 251

Query: 309 VGMVQAYPHIL------YISCNPDSLC 329
             + +A   ++         CN   L 
Sbjct: 252 ARLAEAAARVVSPGGQLVACCNHAGLA 278


>gi|329939827|ref|ZP_08289128.1| methylase [Streptomyces griseoaurantiacus M045]
 gi|329301397|gb|EGG45292.1| methylase [Streptomyces griseoaurantiacus M045]
          Length = 279

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 34/192 (17%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L DA         + L A  + ++            D  Y +       R  +     
Sbjct: 11  QRLADAGVPSPRTDAEELAAFVHGVKRGQLHTVKDTDFDARYWEVVARREAREPLQHITG 70

Query: 185 NSFT-----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARH 230
            +F      Q   G+         ++ W + A +    ++  +++L  G+G  +L LA+ 
Sbjct: 71  RAFFRYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPCIVDLCTGSGAIALALAQE 130

Query: 231 F--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               RV AVE+++ + E AR N+  + V                    R+ N L      
Sbjct: 131 VPRSRVHAVELSEDAHEWARKNMEGSRV------------------ELRQGNALTAFPDL 172

Query: 289 SYRFKTIFVDPP 300
             +   +  +PP
Sbjct: 173 DGQVDLVVSNPP 184


>gi|315503944|ref|YP_004082831.1| protein-(glutamine-n5) methyltransferase, release factor-specific
           [Micromonospora sp. L5]
 gi|315410563|gb|ADU08680.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Micromonospora sp. L5]
          Length = 296

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 15/130 (11%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARH-- 230
             R L        F          +  W +  A +     +++L  G+G  +L +A+   
Sbjct: 71  GFRHLELAVGPGVF--VPRPETELLAGWGIERAREHAAPLVVDLCSGSGAIALAVAQEVP 128

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             RV+AVE +  ++   R N+A       + V + + + T       + + L D+   + 
Sbjct: 129 AARVVAVERSPAALAWLRRNVAGRAAAGDRPVEVVAADVT-------DPDLLADL---AG 178

Query: 291 RFKTIFVDPP 300
           R   +  +PP
Sbjct: 179 RVDVLLCNPP 188


>gi|267992833|gb|ACY87718.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
          Length = 455

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 282 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 341

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 342 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 380


>gi|253742501|gb|EES99331.1| PRIP-interacting protein PIPMT [Giardia intestinalis ATCC 50581]
          Length = 300

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ++  VL++  G +G +L+L+ G G  ++ LA     V ++E  +        N     
Sbjct: 65  ARVIAKVLSSHIGTRGSVLDLFGGAGGQAIGLALEGHSVHSIEYNEQHCALIHNNAQVYG 124

Query: 256 VNNVKI-VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+++   +      FTQ +       R       + ++  + + PP  G
Sbjct: 125 VSHLVFPICGDV--FTQGL-------RFCTSGAITQKYDCVVLSPPWGG 164


>gi|198282338|ref|YP_002218659.1| type 11 methyltransferase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198246859|gb|ACH82452.1| Methyltransferase type 11 [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 202

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 15/131 (11%)

Query: 200 EWVLAATKGIQG-----------DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEA 246
           +W  A     +G            +L+L CG+G F+  LAR     R+L  ++ +  + A
Sbjct: 19  DWWQALWPDPEGVIRALGVKPGITVLDLCCGDGYFTAALARQVEDGRILGFDLDEQMLAA 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A    A   + N   ++  +    + +    ++  + +          +  +  R     
Sbjct: 79  AASVCA--GLENCTFLQGDAMALHRLLPEPVDYCLMANTFHGVPEQTVLAREIARVLKPG 136

Query: 307 ATVGMVQAYPH 317
               +V  +  
Sbjct: 137 GLFAVVNWHAR 147


>gi|153825268|ref|ZP_01977935.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149741096|gb|EDM55155.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 418

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH       ++   N  KI +D       +    +T  Y    +S  Q          
Sbjct: 192 GVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ---------- 234

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               +       ++L  +   G F L  L     RV+  ++++P+++ A++N   N    
Sbjct: 235 ----SMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--- 287

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F  L++      RF  + +DPP+     A + 
Sbjct: 288 -----FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 334


>gi|153833344|ref|ZP_01986011.1| methyltransferase domain family [Vibrio harveyi HY01]
 gi|148870353|gb|EDL69279.1| methyltransferase domain family [Vibrio harveyi HY01]
          Length = 251

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           LL++ CG G  ++ +A+  D  + ++IA+  ++ A++   A  ++N+  ++  + +F+
Sbjct: 42  LLDVCCGTGIVTIPVAKKLDNAVGIDIAEGMLKHAKH--KAQGLDNLSFLQQDATQFS 97


>gi|327484025|gb|AEA78432.1| LSU m5C1962 methyltransferase RlmI [Vibrio cholerae LMA3894-4]
          Length = 397

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             LH       ++   N  KI +D       +    +T  Y    +S  Q          
Sbjct: 171 GVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ---------- 213

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               +       ++L  +   G F L  L     RV+  ++++P+++ A++N   N    
Sbjct: 214 ----SMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--- 266

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    +          F  L++      RF  + +DPP+     A + 
Sbjct: 267 -----FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 313


>gi|326796199|ref|YP_004314019.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Marinomonas mediterranea MMB-1]
 gi|326546963|gb|ADZ92183.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Marinomonas mediterranea MMB-1]
          Length = 278

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 15/105 (14%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGN 222
           +D+    L V+  TLI R                ++E  L    G+ + ++L+L  G G 
Sbjct: 76  QDFWTLELDVSPTTLIPRPD-----------TERLVEVALDLIAGVEKPNILDLGTGTGA 124

Query: 223 FSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            +L LA  R    V   +  K +VE A  N   N ++ V  +   
Sbjct: 125 IALALAYERKDALVSGADCVKQAVELATRNAEKNALS-VNFIHSD 168


>gi|323483036|ref|ZP_08088430.1| hypothetical protein HMPREF9474_00179 [Clostridium symbiosum
           WAL-14163]
 gi|323403665|gb|EGA95969.1| hypothetical protein HMPREF9474_00179 [Clostridium symbiosum
           WAL-14163]
          Length = 224

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
               L++ CG G  ++ LA     + AV+ A   +  AR         N+  ++     F
Sbjct: 48  SDKALDIGCGTGVTTIELAGSVAEMTAVDTAPEMLRQAREKAKKAEAGNIDFIQGDM--F 105

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            + ++                 F  +   P ++        +V+   +I
Sbjct: 106 MEELK--------PGTYDAVMIFNVLLYMPDQAAAMKRLQELVKPGGYI 146


>gi|255526018|ref|ZP_05392942.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           carboxidivorans P7]
 gi|296184766|ref|ZP_06853177.1| RNA cap guanine-N2 methyltransferase [Clostridium carboxidivorans
           P7]
 gi|255510278|gb|EET86594.1| cyclopropane-fatty-acyl-phospholipid synthase [Clostridium
           carboxidivorans P7]
 gi|296050548|gb|EFG89971.1| RNA cap guanine-N2 methyltransferase [Clostridium carboxidivorans
           P7]
          Length = 275

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 50/124 (40%), Gaps = 12/124 (9%)

Query: 195 NVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           N+ +++++ +         +L++ CG G  SL  +++   ++ ++I+   +E A  N+  
Sbjct: 44  NMELVKFLTSKHILNKDSSILDVGCGVGKHSLQFSKYAKNIIGIDISSKMIEYAIQNMKD 103

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             ++N++         T       ++N  K  D+            P     D  + M++
Sbjct: 104 MSIDNIEYKVE-----TWQSLNLDDYNWRKKFDL------VFASMTPAINSKDTLLKMIE 152

Query: 314 AYPH 317
           A   
Sbjct: 153 ASKR 156


>gi|303279905|ref|XP_003059245.1| TWY3 methyltransferase [Micromonas pusilla CCMP1545]
 gi|226459081|gb|EEH56377.1| TWY3 methyltransferase [Micromonas pusilla CCMP1545]
          Length = 1079

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVN--N 258
           ++        +++LY G G ++L L +H    +V A E    SV A + N+ AN ++   
Sbjct: 480 MSTQPAAGETVVDLYAGIGYYTLQLLKHAGVSKVYACEWNPNSVAALKKNLVANEIDERR 539

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +++   +         +R    L      ++      + P   G+
Sbjct: 540 CEVLEGDNNRTAPRGVADRVLLGLLPDSERAWPTAVAALRPETGGV 585


>gi|303281002|ref|XP_003059793.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458448|gb|EEH55745.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 449

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAA 253
            MLEW  +        +L++ CG G  S  LA+      +V  + ++   V+ A    A 
Sbjct: 205 KMLEW--SGCPPNPAMVLDVGCGIGGTSRHLAKALGPKSKVQGITLSPNQVQRATELAAT 262

Query: 254 NHVNNVKIVRMSSKE 268
             V+N     M++ E
Sbjct: 263 QGVDNASFRVMNALE 277


>gi|218132947|ref|ZP_03461751.1| hypothetical protein BACPEC_00808 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991820|gb|EEC57824.1| hypothetical protein BACPEC_00808 [Bacteroides pectinophilus ATCC
           43243]
          Length = 159

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 14/90 (15%)

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              V  V+ ++ +V  A  N   N +++ VK       E             L +++   
Sbjct: 4   AREVTGVDASELAVNQAAENARLNGIDDIVKFECRDVFEL------------LPELEKKG 51

Query: 290 YRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
            +F  + +DPP      ++    V+ Y  I
Sbjct: 52  EKFDVVILDPPAFTKSRESVKKAVRGYREI 81


>gi|297192052|ref|ZP_06909450.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719498|gb|EDY63406.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 281

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 66/189 (34%), Gaps = 40/189 (21%)

Query: 129 DAWRECAIRLRDALHARKY-QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
            + R  A  L   +H  K  ++  +  A+      D  Y +       R  +      +F
Sbjct: 21  PSPRFDAEELAAFVHGVKRGELHNVKDAD-----FDARYWEAVARREAREPLQHITGRAF 75

Query: 188 T-----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHF-- 231
                 Q   G+         ++ W + A +    ++  +++L  G+G  +L +A+    
Sbjct: 76  FRYLELQVGPGVFVPRPETESVVGWAIEAVRAMDVVEPLIVDLCSGSGAIALAMAQEVPR 135

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV AVE+++ +++  R N      + V +    +               L  +     +
Sbjct: 136 SRVHAVELSEDALKWTRKNAEG---SRVTVHHGDA---------------LTALPELDGQ 177

Query: 292 FKTIFVDPP 300
              +  +PP
Sbjct: 178 VDLVISNPP 186


>gi|170748262|ref|YP_001754522.1| Mg-protoporphyrin IX methyl transferase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654784|gb|ACB23839.1| magnesium protoporphyrin O-methyltransferase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 251

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 15/135 (11%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AAN 254
             +L W+ A   G+   LL+  CG G  S+  AR    V+A++++   +  A+  + A  
Sbjct: 50  ATLLSWLPADMTGL--RLLDAGCGTGALSVEAARRGAEVVAIDVSPTLIGLAQERLPAIA 107

Query: 255 HVNNVKIVRMSSKE-----FTQAMR-------REREFNRLKDIDIHSYRFKTIFVDPPRS 302
               +        +     F   +        R  +  R   +         +F   PR+
Sbjct: 108 GAGRIDFRVGDMLDPGLGRFDHVVAMDSLIHYRAADIARALAVLGARTDGSVLFTVAPRT 167

Query: 303 GLDDATVGMVQAYPH 317
            L        + +P 
Sbjct: 168 ALLTLMHAAGKFFPR 182


>gi|254900563|ref|ZP_05260487.1| hypothetical protein LmonJ_12134 [Listeria monocytogenes J0161]
 gi|254913486|ref|ZP_05263498.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937933|ref|ZP_05269630.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|258610542|gb|EEW23150.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293591494|gb|EFF99828.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 201

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 30/113 (26%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  
Sbjct: 60  TGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRAIELAKENAEINKITNTHIYESSVY 119

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           +                 ++ +  ++ I  +PP           ++A   I++
Sbjct: 120 D-----------------NVTANDYQAIISNPP-----------IRAGKRIVH 144


>gi|169848697|ref|XP_001831053.1| Tgs1 protein [Coprinopsis cinerea okayama7#130]
 gi|116507780|gb|EAU90675.1| Tgs1 protein [Coprinopsis cinerea okayama7#130]
          Length = 309

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEF 269
             +L+ +CG G  ++  A+  +RV+A++ +   +  AR+N       + ++ +      F
Sbjct: 117 DTILDAFCGVGGNAIAFAQTCNRVIALDTSPVRLALARHNAEIYGVADRIEFILADYISF 176

Query: 270 TQAMRR--EREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              +     +  +              +F+ PP  G
Sbjct: 177 ANTLASSTPKSTSESNSSSTKQRIIDVVFLSPPWGG 212


>gi|83589787|ref|YP_429796.1| methyltransferase small [Moorella thermoacetica ATCC 39073]
 gi|83572701|gb|ABC19253.1| Methyltransferase small [Moorella thermoacetica ATCC 39073]
          Length = 192

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 15/102 (14%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEFTQ 271
           L+L+ G+G   L  L+R   RV+ VE  + +++    NI A  +    +++ + ++    
Sbjct: 47  LDLFAGSGAVGLEALSRGARRVVFVENNRQALKCLTANIKATGLEGRGQVMALDARRALV 106

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMV 312
            + R RE             F  IF DPP R G  +  +  V
Sbjct: 107 TLARRRE------------TFDLIFSDPPYRQGWGELILPAV 136


>gi|47096510|ref|ZP_00234101.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47015101|gb|EAL06043.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 204

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 30/113 (26%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  
Sbjct: 63  TGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRAIELAKENAEINKITNTHIYESSVY 122

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           +                 ++ +  ++ I  +PP           ++A   I++
Sbjct: 123 D-----------------NVTANDYQAIISNPP-----------IRAGKRIVH 147


>gi|315640187|ref|ZP_07895307.1| methyltransferase domain protein [Enterococcus italicus DSM 15952]
 gi|315484069|gb|EFU74545.1| methyltransferase domain protein [Enterococcus italicus DSM 15952]
          Length = 200

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +G LL++ CG G   L LA    R V  V+I + +V  A+ N   NH++ V I
Sbjct: 59  PEGTLLDVGCGYGPIGLSLAYATKRQVEMVDINERAVSLAQQNATLNHIDTVTI 112


>gi|302549270|ref|ZP_07301612.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Streptomyces viridochromogenes DSM 40736]
 gi|302466888|gb|EFL29981.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Streptomyces viridochromogenes DSM 40736]
          Length = 270

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
            R L        F          ++E  LA        +L+L CG+G     LA    RV
Sbjct: 72  FRGLRVTVAPGVF--VPRRRTEFLVEQALAR-VPRATVVLDLCCGSGAVGAALASALGRV 128

Query: 235 --LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
              A +I   +V  AR N+AA       + +    +      R R
Sbjct: 129 ELHAADIDPAAVRCARSNVAAVG---GHVHQGDLFDALPGALRGR 170


>gi|223984268|ref|ZP_03634413.1| hypothetical protein HOLDEFILI_01707 [Holdemania filiformis DSM
           12042]
 gi|223963753|gb|EEF68120.1| hypothetical protein HOLDEFILI_01707 [Holdemania filiformis DSM
           12042]
          Length = 405

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 42/236 (17%)

Query: 83  INALMIEMMATIRLEPL--LRAKLFQIDYLTSQSDQAIVTLIYHR-----LLDDAWRECA 135
           ++     +++ I    +  ++ +LF + +   +     V  IY R        +   E  
Sbjct: 120 VDRFGPVLVSQIMSLGIERIKDQLFALLWEEMEKRGQTVAGIYERNDIALRKKEGLTEST 179

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
                  H      Q++       I  + D+ + + T       Y          N    
Sbjct: 180 GWAAGFPHPESTTTQIVENG----IRYEVDFGEGQKTGFFLDQKY----------NRQAA 225

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAAN 254
             +              +L+     G+F+L  A+    RV+A +I+  ++ +AR+N   N
Sbjct: 226 ARL---------AKGRTVLDCCTHTGSFALNAAKAGAARVIAADISASALASARHNAQLN 276

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +  V        EF QA      F+ L D    +     I +DPP       T+ 
Sbjct: 277 GLEAVM-------EFVQA----DVFDLLADPKWKAQGVDYIILDPPAFTKSRKTIR 321


>gi|118581364|ref|YP_902614.1| ribosomal protein L11 methyltransferase [Pelobacter propionicus DSM
           2379]
 gi|166223426|sp|A1AT86|PRMA_PELPD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|118504074|gb|ABL00557.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Pelobacter
           propionicus DSM 2379]
          Length = 309

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 192 AGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARY 249
             + + +LE ++      +   +L+L  G+G  ++   R    RV+AV+I   +VE AR 
Sbjct: 152 TRLCLELLEEIMDGMPILLTPAVLDLGTGSGILAMAAVRLGAGRVVAVDIDPQAVEVARE 211

Query: 250 NIAANHVNN 258
           N+A N + +
Sbjct: 212 NLALNDLTD 220


>gi|70729439|ref|YP_259177.1| UbiE/COQ5 family methlytransferase [Pseudomonas fluorescens Pf-5]
 gi|68343738|gb|AAY91344.1| methlytransferase, UbiE/COQ5 family [Pseudomonas fluorescens Pf-5]
          Length = 254

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            +A      L     A KG    LL+L CG G+ S  +A     V+A ++++  ++    
Sbjct: 26  VHAQGAEFALLQAEVAGKG-TARLLDLGCGAGHVSFHVAPQVREVVAYDLSQQMLDVVAG 84

Query: 250 NIAANHVNNVKIVRMSSKEFTQA 272
                 + N++ V  +++    A
Sbjct: 85  AAQERGLGNIRTVLGAAERLPFA 107


>gi|304322355|ref|YP_003855998.1| methlytransferase, UbiE/COQ5 family protein [Parvularcula
           bermudensis HTCC2503]
 gi|303301257|gb|ADM10856.1| methlytransferase, UbiE/COQ5 family protein [Parvularcula
           bermudensis HTCC2503]
          Length = 222

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIAANH 255
             ++A  +   GD +++L CG G     L+       RV+AV++++  +  AR       
Sbjct: 37  ARLIAGLELSPGDIVVDLCCGTGVNLERLSAAVGEAGRVVAVDLSEGMLGEARKRAGRAG 96

Query: 256 VNNVKIVRMSSKEF 269
           + NV  V+    EF
Sbjct: 97  LGNVDFVQADVCEF 110


>gi|260768543|ref|ZP_05877477.1| hypothetical protein VFA_001595 [Vibrio furnissii CIP 102972]
 gi|260616573|gb|EEX41758.1| hypothetical protein VFA_001595 [Vibrio furnissii CIP 102972]
          Length = 397

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH       ++   N  KI +D       +    +T  Y    +S  Q  
Sbjct: 163 KEGLEERVGVLHGEAPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ-- 213

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                       +       D+L  +   G F L  L     RV+  ++++P+++ A++N
Sbjct: 214 ------------SMKYVKDKDVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKFAESKAQLN 313

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 314 GACRGYKDI 322


>gi|320008548|gb|ADW03398.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces flavogriseus ATCC 33331]
          Length = 281

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 68/189 (35%), Gaps = 40/189 (21%)

Query: 129 DAWRECAIRLRDALHARKY-QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
            + R  A  L   +H  K   +  +  A+      D  Y +       R  +      +F
Sbjct: 21  PSPRFDAEELAAFVHGVKRGALHNVPDAD-----FDARYWETIARREAREPLQHITGRAF 75

Query: 188 T-----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHF-- 231
                 Q   G+         ++ W + A +    ++  +++L  G+G  +L +A+    
Sbjct: 76  FRYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPLIVDLCTGSGAIALAMAQEVPR 135

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV AVE+++ ++   R N      + V + R  +             + L ++D    +
Sbjct: 136 SRVHAVELSEDALRWTRKNAEG---SRVTVHRGDA------------LSALPELD---GQ 177

Query: 292 FKTIFVDPP 300
              +  +PP
Sbjct: 178 VDLVISNPP 186


>gi|212223921|ref|YP_002307157.1| hypothetical protein TON_0772 [Thermococcus onnurineus NA1]
 gi|212008878|gb|ACJ16260.1| hypothetical protein, conserved [Thermococcus onnurineus NA1]
          Length = 382

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 16/124 (12%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                  +     + ++ CG G   +  A   ++   V+I    +E AR N     V N+
Sbjct: 73  YRAERLAEFGVKSIADVSCGIGIQLIFYAMKVEKAYGVDIDPKKIEFARKNAEKYGVRNI 132

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           + +   S               L    I     + IF DP R   + +  +  +   P  
Sbjct: 133 EFINADS---------------LAPETIERIDAEVIFSDPARPPEMPERRLEDLLPSPLA 177

Query: 319 LYIS 322
           +Y S
Sbjct: 178 IYES 181


>gi|182413492|ref|YP_001818558.1| ribosomal L11 methyltransferase [Opitutus terrae PB90-1]
 gi|226710097|sp|B1ZUS4|PRMA_OPITP RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|177840706|gb|ACB74958.1| ribosomal L11 methyltransferase [Opitutus terrae PB90-1]
          Length = 295

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 5/114 (4%)

Query: 191 NAGINVHMLEW--VLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAA 247
           N       +E    LA   G  G +++  CG+G  +L  A+  F  V+  +    +V  +
Sbjct: 130 NHETTRLCVERLVALADEFGTAGLVVDAGCGSGILALSAAKLGFRDVVGFDNDLEAVRVS 189

Query: 248 RYNIAANHVNN-VKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             N   N +N  V+               +    N L D+ I         V P
Sbjct: 190 EENAVLNELNGQVRFFVGDLVSGLKDVQAQVLMANILADVLIRYASHLVQAVRP 243


>gi|188581630|ref|YP_001925075.1| methyltransferase small [Methylobacterium populi BJ001]
 gi|179345128|gb|ACB80540.1| methyltransferase small [Methylobacterium populi BJ001]
          Length = 341

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV 256
           LE      +     ++++ CG+G   +++A+      V+ V+I   ++ AAR N     V
Sbjct: 148 LEERARKGRPAPRRVVDIGCGSGATGILVAKRLPEAEVVLVDINPAALRAARINARLAGV 207

Query: 257 NNVKIVRMSS 266
            NV  V    
Sbjct: 208 PNVHPVHSDM 217


>gi|110736480|dbj|BAF00208.1| AR401 [Arabidopsis thaliana]
          Length = 304

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 26/181 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-------ENSFTQPNAGINVHMLEWVLAAT 206
             +  ++    D V E +T   + L            EN        +N        A  
Sbjct: 63  HGHAGEVWFGDD-VMEIVTSWTKDLCVEISQRNMSVSEND---VTTEVNDQ------ADK 112

Query: 207 KGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                ++L+L  GNG     LA+  F  +   + +  +VE A++    +   N++ +   
Sbjct: 113 YLSSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSDGAVELAQHLSQRDGFPNIRFMVDD 172

Query: 266 --SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
               +  Q  +   +   L  I +H            R    D+   +V     ++  SC
Sbjct: 173 ILDTKLEQQFKLVMDKGTLDAIGLHPDGPVK------RVMYWDSVSKLVAPGGILVITSC 226

Query: 324 N 324
           N
Sbjct: 227 N 227


>gi|21593511|gb|AAM65478.1| pheromone receptor, putative (AR401) [Arabidopsis thaliana]
          Length = 358

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 26/181 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-------ENSFTQPNAGINVHMLEWVLAAT 206
             +  ++    D V E +T   + L            EN        +N        A  
Sbjct: 117 HGHAGEVWFGDD-VMEIVTSWTKDLCVEISQRNMSVSEND---VTTEVNDQ------ADK 166

Query: 207 KGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                ++L+L  GNG     LA+  F  +   + +  +VE A++    +   N++ +   
Sbjct: 167 YLSSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSDGAVELAQHLSQRDGFPNIRFMVDD 226

Query: 266 --SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
               +  Q  +   +   L  I +H            R    D+   +V     ++  SC
Sbjct: 227 ILDTKLEQQFKLVMDKGTLDAIGLHPDGPVK------RVMYWDSVSKLVAPGGILVITSC 280

Query: 324 N 324
           N
Sbjct: 281 N 281


>gi|29028848|gb|AAO64803.1| At1g66680 [Arabidopsis thaliana]
          Length = 263

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 26/181 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-------ENSFTQPNAGINVHMLEWVLAAT 206
             +  ++    D V E +T   + L            EN        +N        A  
Sbjct: 22  HGHAGEVWFGDD-VMEIVTSWTKDLCVEISQRNMSVSEND---VTTEVNDQ------ADK 71

Query: 207 KGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                ++L+L  GNG     LA+  F  +   + +  +VE A++    +   N++ +   
Sbjct: 72  YLSSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSDGAVELAQHLSQRDGFPNIRFMVDD 131

Query: 266 --SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
               +  Q  +   +   L  I +H            R    D+   +V     ++  SC
Sbjct: 132 ILDTKLEQQFKLVMDKGTLDAIGLHPDGPVK------RVMYWDSVSKLVAPGGILVITSC 185

Query: 324 N 324
           N
Sbjct: 186 N 186


>gi|29839981|ref|NP_829087.1| hypothetical protein CCA00214 [Chlamydophila caviae GPIC]
 gi|29834328|gb|AAP04965.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
          Length = 274

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L L+   G+ S+  A+   +V  V+ +K +++ A+ N+A N ++  +I          
Sbjct: 108 RVLNLFAYTGSTSIFAAKCGAKVCHVDASKSAIKWAQKNVANNALSEKRIF--------- 158

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
               E  F+ L+       +++ I +DPP  G   
Sbjct: 159 -WVIEDVFSFLQKEIRRGKKYEVILLDPPTYGRGP 192


>gi|15219724|ref|NP_176841.1| AR401 [Arabidopsis thaliana]
 gi|12597759|gb|AAG60072.1|AC013288_6 pheromone receptor, putative (AR401) [Arabidopsis thaliana]
 gi|332196423|gb|AEE34544.1| putative S locus-linked protein [Arabidopsis thaliana]
          Length = 358

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 26/181 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-------ENSFTQPNAGINVHMLEWVLAAT 206
             +  ++    D V E +T   + L            EN        +N        A  
Sbjct: 117 HGHAGEVWFGDD-VMEIVTSWTKDLCVEISQRNMSVSEND---VTTEVNDQ------ADK 166

Query: 207 KGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                ++L+L  GNG     LA+  F  +   + +  +VE A++    +   N++ +   
Sbjct: 167 YLSSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSDGAVELAQHLSQRDGFPNIRFMVDD 226

Query: 266 --SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
               +  Q  +   +   L  I +H            R    D+   +V     ++  SC
Sbjct: 227 ILDTKLEQQFKLVMDKGTLDAIGLHPDGPVK------RVMYWDSVSKLVAPGGILVITSC 280

Query: 324 N 324
           N
Sbjct: 281 N 281


>gi|1669601|dbj|BAA13688.1| AR401 [Arabidopsis thaliana]
          Length = 317

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 26/181 (14%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQI-------ENSFTQPNAGINVHMLEWVLAAT 206
             +  ++    D V E +T   + L            EN        +N        A  
Sbjct: 117 HGHAGEVWFGDD-VMEIVTSWTKDLCVEISQRNMSVSEND---VTTEVNDQ------ADK 166

Query: 207 KGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                ++L+L  GNG     LA+  F  +   + +  +VE A++    +   N++ +   
Sbjct: 167 YLSSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSDGAVELAQHLSQRDGFPNIRFMVDD 226

Query: 266 --SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
               +  Q  +   +   L  I +H            R    D+   +V     ++  SC
Sbjct: 227 ILDTKLEQQFKLVMDKGTLDAIGLHPDGPVK------RVMYWDSVSKLVAPGGILVITSC 280

Query: 324 N 324
           N
Sbjct: 281 N 281


>gi|304314211|ref|YP_003849358.1| methyltransferase [Methanothermobacter marburgensis str. Marburg]
 gi|302587670|gb|ADL58045.1| predicted methyltransferase [Methanothermobacter marburgensis str.
           Marburg]
          Length = 338

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 200 EWVLAATKGIQGDL-LELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           E  + A +  +GD+ L+++ G G F++ +ARH    R+ AV+I   +V   R N   N  
Sbjct: 177 EREIVARQVKEGDVVLDMFAGAGPFAVAVARHGKASRIYAVDINPAAVGYIRENARLNRA 236

Query: 257 NNVKI-VRMSSKEFT 270
            ++ + V    ++F 
Sbjct: 237 EDIIVPVEGDVQDFL 251


>gi|291334338|gb|ADD93997.1| hemK protein [uncultured marine bacterium MedDCM-OCT-S11-C310]
          Length = 289

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 28/125 (22%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHF--DRVLA 236
            Q +  +        H++E  L   +    D   +L+L  G+G   L LA       V  
Sbjct: 88  FQVSPAVLIPRPETEHLVEKALGWCRDRGTDSPKILDLCTGSGCVGLTLALELPKASVTL 147

Query: 237 VEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +++  ++  AR+N   + V+  V+                  F  L +      RF  +
Sbjct: 148 TDLSPEALAVARHNADTHDVDERVRFFEGD------------LFESLPE----GERFDLV 191

Query: 296 FVDPP 300
             +PP
Sbjct: 192 LANPP 196


>gi|269978101|ref|ZP_06185051.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Mobiluncus mulieris 28-1]
 gi|269933610|gb|EEZ90194.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Mobiluncus mulieris 28-1]
          Length = 330

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 58/183 (31%), Gaps = 25/183 (13%)

Query: 173 VAGRTLIYRQIENSFTQPNAG---INVHMLEWVLAAT-KGIQGDLLELYCGNGNFSLVLA 228
           +  R L  R     F         +    +E       +GI   +L+L CG+G   L +A
Sbjct: 78  MYFRGLKLRARPGVFV-VRPETEWVAEAGIETAQVWGAQGIPPQVLDLGCGSGALGLAVA 136

Query: 229 RHFDRVL--AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--- 283
                 +  +V+I+  +V   + N     +   +++   + +    +      +RL    
Sbjct: 137 AEVADTVLTSVDISPEAVALTQENADLCGIK-ARVILADATDLGGLISALTADSRLAPHE 195

Query: 284 -DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIE 342
            D    +   +      P    ++      +A P    I  NP             + IE
Sbjct: 196 TDRKAAATEGECQTEAAPHESENNGANET-KATPKFHVIVTNP------------PYVIE 242

Query: 343 RLA 345
            + 
Sbjct: 243 TVT 245


>gi|239943647|ref|ZP_04695584.1| hypothetical protein SrosN15_21811 [Streptomyces roseosporus NRRL
           15998]
 gi|239990098|ref|ZP_04710762.1| hypothetical protein SrosN1_22528 [Streptomyces roseosporus NRRL
           11379]
 gi|291447112|ref|ZP_06586502.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291350059|gb|EFE76963.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 408

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 17/91 (18%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L CG G  ++ LAR    VLAV+    + E AR N  A  +   +++ +   + T  
Sbjct: 117 VADLCCGIGGDAIALARAGISVLAVDRDPLTAEVARANAEALGL--AELIEVRCADVT-- 172

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                      +ID   Y    +FVDP R G
Sbjct: 173 -----------EIDTAPY--DAVFVDPARRG 190


>gi|218508607|ref|ZP_03506485.1| hypothetical protein RetlB5_14051 [Rhizobium etli Brasil 5]
          Length = 248

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN 254
            ++E V        GD LL+L CG G   +  AR     V  ++     +++AR   AA 
Sbjct: 11  ALIERVAGRIGLRPGDRLLDLGCGPGQIGIAFARLAGTDVTGLDPEPEMLDSAREGAAAA 70

Query: 255 HVNNVKIVRMSSKEFTQAM 273
            +   + V  SS +   A 
Sbjct: 71  GIR-AEFVLGSSYDLGPAF 88


>gi|167769700|ref|ZP_02441753.1| hypothetical protein ANACOL_01034 [Anaerotruncus colihominis DSM
           17241]
 gi|167668061|gb|EDS12191.1| hypothetical protein ANACOL_01034 [Anaerotruncus colihominis DSM
           17241]
          Length = 280

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L   KG     + +L  G+G  +  +A  R    V AVE++  +      N+
Sbjct: 96  TETLVETALRLLKGTAAPAVADLCAGSGCIAAAIAHARPDAHVYAVELSDAAFPYLVRNL 155

Query: 252 AANHVNNVKIVRMSS 266
           A N   N + +   +
Sbjct: 156 ARNAPGNAEAICGDA 170


>gi|148273201|ref|YP_001222762.1| hypothetical protein CMM_2020 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831131|emb|CAN02083.1| unnamed protein product [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 208

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 22/115 (19%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +G LL++ CG G  +L LA       V AV++ + ++   R N  +  + NV  V  
Sbjct: 57  PPAEGHLLDVGCGWGPVALDLAMRSPAATVWAVDVNERALALTRANARSLGLENVNAV-- 114

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
                            L +       F  ++ +PP R G +     ++   P +
Sbjct: 115 -----------------LPEDVPADLEFAAVWSNPPIRVGKEALHGILLDWMPRL 152


>gi|257456572|ref|ZP_05621767.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
 gi|257445992|gb|EEV21040.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
          Length = 358

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 12/147 (8%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
             +  A       +L L+C   +FS+  L     +V +V+++K  ++ A  N   N V++
Sbjct: 157 ARIAVAESAAGKMVLNLFCYTASFSVHALVSGARQVCSVDLSKNYLQWAYQNAQLNGVDD 216

Query: 259 ---VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                 V+   + F +   + +E  R   I      F      P    ++     ++++ 
Sbjct: 217 PARCTFVQSDVRLFLEQAAKRKE--RWDIIICDPPTFSNSKRTPQFFDVNRHWQDLIRSC 274

Query: 316 ------PHILYISCNPDSLCRDLSILS 336
                   +LY S N  +L  + + LS
Sbjct: 275 CKVLSAEGVLYFSTNSRTLRFNAAELS 301


>gi|229521461|ref|ZP_04410880.1| hypothetical protein VIF_001998 [Vibrio cholerae TM 11079-80]
 gi|229341559|gb|EEO06562.1| hypothetical protein VIF_001998 [Vibrio cholerae TM 11079-80]
          Length = 418

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 30/170 (17%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           LH       ++   N  KI +D       +    +T  Y    +S  Q            
Sbjct: 194 LHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ------------ 234

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             +     + ++L  +   G F L  L     RV+  ++++P+++ A++N   N      
Sbjct: 235 --SMKYVKEKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG----- 287

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                  +          F  L++      RF  + +DPP+     A + 
Sbjct: 288 ---FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 334


>gi|196001639|ref|XP_002110687.1| hypothetical protein TRIADDRAFT_54966 [Trichoplax adhaerens]
 gi|190586638|gb|EDV26691.1| hypothetical protein TRIADDRAFT_54966 [Trichoplax adhaerens]
          Length = 196

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAA 247
               I  HML  +      IQG L+ +L CG G  S+  A      ++ ++I   ++  A
Sbjct: 29  TTPHIAAHMLYNIDTMYNDIQGKLVCDLGCGCGVLSVGTAMLDASLIVGIDIDDDALMIA 88

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           R NI    + NV+          +A   + EF            F T+ ++PP  G  D 
Sbjct: 89  RRNIEEFELENVQ--------LIKANISDTEFF-------GGKIFDTVIMNPP-FGTKDK 132

Query: 308 TVGMVQAYPHI 318
            + M+  +  +
Sbjct: 133 GIDMIFLHRAL 143


>gi|157376590|ref|YP_001475190.1| HemK family modification methylase [Shewanella sediminis HAW-EB3]
 gi|157318964|gb|ABV38062.1| modification methylase, HemK family [Shewanella sediminis HAW-EB3]
          Length = 280

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT--KICLDRDYVDERLTVAGRTLIYR 181
           H++ D    +  + L   +H ++  +        T  ++    + V  RL       I  
Sbjct: 17  HKISDTPKLDAEVILLHIIHQQRGYLYTWPDERLTSDQVTAFGEMVARRLLGTPIAHI-- 74

Query: 182 QIENSF----TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--R 229
             E  F       N            ++E  L         +L+L  G G  +L LA  +
Sbjct: 75  VGEREFWSLPFMVNPTTLIPRPDTEILVETALNLPLADSARVLDLGTGTGAIALSLAYEK 134

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              ++ AV+    +V  A+ N A   +  V+IV+  
Sbjct: 135 PEWQITAVDKIIEAVALAKANRAHLKLPQVEIVQSD 170


>gi|157130292|ref|XP_001661874.1| prip interacting protein. pimt [Aedes aegypti]
 gi|108871934|gb|EAT36159.1| prip interacting protein. pimt [Aedes aegypti]
          Length = 526

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ +CG G  S+  A    +V+A++I    +E A++N A     + ++ +  +  +   
Sbjct: 371 IVDAFCGCGGNSIQFAFTCQKVIAIDIDPKKIEMAKHNAAVYGVADRIEFITGNFLQLAD 430

Query: 272 AMRREREF 279
            +R +  F
Sbjct: 431 KLRADVIF 438


>gi|49477480|ref|YP_036226.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49329036|gb|AAT59682.1| conserved hypothetical protein, possible methyltransferase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 239

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +LE ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       
Sbjct: 33  LLEKLVLQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA-----P 87

Query: 258 NVKIVRMSSKEF 269
           +   +   ++ F
Sbjct: 88  DAAFIVDDARYF 99


>gi|85859442|ref|YP_461644.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB]
 gi|85722533|gb|ABC77476.1| adenine-specific methyltransferase [Syntrophus aciditrophicus SB]
          Length = 190

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 15/111 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEF 269
           + L+LY G GN  +  L+R  D V+ VE     V + + N+         +I RM  ++ 
Sbjct: 43  EFLDLYAGTGNVGMEALSRGADVVVFVEKISVLVTSLKRNLEQFGFQGRYRIFRMEVEKA 102

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
              +                  F  IF DPP R G  D T+G+++ YP IL
Sbjct: 103 VAHLAE------------GGMCFDLIFADPPYRKGFVDRTIGLIKDYPSIL 141


>gi|332291079|ref|YP_004429688.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169165|gb|AEE18420.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 288

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 33/129 (25%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGI--------QGDLLELYCGNGNFSLVLARHF-- 231
            Q N            +++W++              +  +L++  G+G  ++ LA++   
Sbjct: 85  FQVNPATLIPRPETEELVDWIITDKAESFVKSETQEKLKILDIGTGSGCIAISLAKYMSK 144

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
             V A++I++ ++  A  N   N V+ V           +                  ++
Sbjct: 145 AHVEAIDISQDALATAYQNAKRNEVD-VTFYNQDVLAVEE----------------LEHK 187

Query: 292 FKTIFVDPP 300
           +  I  +PP
Sbjct: 188 YDIIVSNPP 196


>gi|300087173|ref|YP_003757695.1| methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299526906|gb|ADJ25374.1| Methyltransferase type 11 [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 166

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 25/60 (41%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L++ CG G+ ++ LA     V  +++    +  A  +     ++NV   +  +    
Sbjct: 31  DRVLDVCCGTGDQAIRLAEQGIEVHGIDLNGSMLATAESHKRRAGLDNVSFGQADASALL 90


>gi|218516336|ref|ZP_03513176.1| 23S rRNA (uracil-5-)-methyltransferase protein [Rhizobium etli
           8C-3]
          Length = 421

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 57/193 (29%), Gaps = 15/193 (7%)

Query: 15  AEKVDRLRQMML-AFQVPNL-QIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMR 72
           A K   +   +      P++ +I  + P   R R  F       D+       ++   + 
Sbjct: 42  AFKRQLVVDALKSKGLTPDVGEIVPARP-GERRRVVFAARKTEKDMLIGFNQAESHHIVA 100

Query: 73  IDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWR 132
           I+     S  I A +  + A I       A+ F++  L + S   I      +L D   R
Sbjct: 101 IEECPISSAGIVARLPAIKA-IAASLATNAEPFRVAVLETLSGLDIAVDEIKKLSDPQRR 159

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           +    +       +  +         K  +D   V+                  F Q   
Sbjct: 160 KAIETVLGLRGIARVTLNGEILVEPAKPIIDFGGVE-----------VSPPAGGFAQATK 208

Query: 193 GINVHMLEWVLAA 205
                M E VLA 
Sbjct: 209 PAEEAMAELVLAH 221


>gi|227496324|ref|NP_473430.3| trimethylguanosine synthase [Mus musculus]
 gi|143811468|sp|Q923W1|TGS1_MOUSE RecName: Full=Trimethylguanosine synthase; AltName: Full=Nuclear
           receptor coactivator 6-interacting protein; AltName:
           Full=PRIP-interacting protein with methyltransferase
           motif; Short=PIMT; Short=PIPMT
 gi|123228825|emb|CAM17201.1| trimethylguanosine synthase homolog (S. cerevisiae) [Mus musculus]
 gi|148673771|gb|EDL05718.1| nuclear receptor coactivator 6 interacting protein [Mus musculus]
          Length = 853

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    ++ AR N     + + ++ +         
Sbjct: 686 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLAP 745

Query: 272 AMRREREF 279
            ++ +  F
Sbjct: 746 CLKADVVF 753


>gi|20071722|gb|AAH26368.1| Tgs1 protein [Mus musculus]
          Length = 342

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    ++ AR N     + + ++ +         
Sbjct: 175 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLAP 234

Query: 272 AMRREREF 279
            ++ +  F
Sbjct: 235 CLKADVVF 242


>gi|49903612|gb|AAH75728.1| Trimethylguanosine synthase homolog (S. cerevisiae) [Mus musculus]
          Length = 853

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    ++ AR N     + + ++ +         
Sbjct: 686 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLAP 745

Query: 272 AMRREREF 279
            ++ +  F
Sbjct: 746 CLKADVVF 753


>gi|20092728|ref|NP_618803.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
 gi|19918019|gb|AAM07283.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
          Length = 323

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G    +L++  G G  ++ LA     V AVE A   VE  +       V N++IV    +
Sbjct: 105 GPASRVLDVGAGPGTLAVPLASRCAHVTAVEPAAGMVEVMKEFAQKEGVENLEIVSKRWE 164

Query: 268 EFTQA 272
           +   A
Sbjct: 165 DIDPA 169


>gi|18977089|ref|NP_578446.1| putative methyltransferase [Pyrococcus furiosus DSM 3638]
 gi|18892732|gb|AAL80841.1| putative methyltransferase [Pyrococcus furiosus DSM 3638]
          Length = 174

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           ++      +  L++   G G F+L LA+ F  V A++I    +E  R  +    + NVK+
Sbjct: 21  LIRERIPKRDILVDFGAGTGYFTLPLAKLFREVYAIDINAERLEYLRKRLKEEGITNVKL 80

Query: 262 VRMS 265
           +   
Sbjct: 81  ILGD 84


>gi|15127914|gb|AAK84355.1|AF389908_1 PIMT [Mus musculus]
          Length = 853

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    ++ AR N     + + ++ +         
Sbjct: 686 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLLAP 745

Query: 272 AMRREREF 279
            ++ +  F
Sbjct: 746 CLKADVVF 753


>gi|330718919|ref|ZP_08313519.1| 16S RNA G1207 methylase RsmC [Leuconostoc fallax KCTC 3537]
          Length = 206

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 28/139 (20%)

Query: 188 TQPNAGI---------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAV 237
            Q ++G+            MLE  L+ T   +G +L+L  G G   + +A+ F R V  V
Sbjct: 37  FQTDSGVFSKRTIDFGTRTMLE-ALSKTTIPEGKILDLGTGYGVVGIAVAKKFKRTVDMV 95

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           ++ + +++ AR N   N+V +V  +                  +    D  S ++  I V
Sbjct: 96  DVNERALQLARVNAKKNNVADVTHI-----------------FQSDVYDNISEQYGLILV 138

Query: 298 DPPRSGLDDATVGMVQAYP 316
           +PP          M+Q   
Sbjct: 139 NPPIRAGKKVVTSMLQEAK 157


>gi|330836982|ref|YP_004411623.1| PUA domain containing protein [Spirochaeta coccoides DSM 17374]
 gi|329748885|gb|AEC02241.1| PUA domain containing protein [Spirochaeta coccoides DSM 17374]
          Length = 421

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 19/162 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFT-QPNAGINVH---MLEW-----VLAATKGIQGDLLELYCG 219
           ER    GR    R  EN F  + N G         +       L     +   +L+ +  
Sbjct: 190 ERYYPEGRQKNIRFRENGFFYEINPGTGQKSGFYCDQRDNRAALEKWC-VDARVLDAFSY 248

Query: 220 NGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE-R 277
            G F+L  L      V A++ + P++     N+  N        R+ +    +    E  
Sbjct: 249 TGGFTLHALGAGAKHVHALDSSSPALRRLLANVHINSDAG----RLDATARDRVTIEECN 304

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
            F +L+DI  +SY    + +DPP+     +     ++AY  I
Sbjct: 305 VFEKLRDIPANSY--DVVILDPPKLAPSKSHVEAALKAYKDI 344


>gi|323269886|gb|EGA53335.1| 23S rRNA m(5)C1962 methyltransferase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 230

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 57  RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 116

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R             H  +F  I +DPP+   +    +G  + Y  I
Sbjct: 117 LLRAYRE------------HGEKFDVIIMDPPKFVENKSQLMGACRGYKDI 155


>gi|294508110|ref|YP_003572168.1| conserved hypothetical protein containing methylase domain
           [Salinibacter ruber M8]
 gi|294344438|emb|CBH25216.1| conserved hypothetical protein containing methylase domain
           [Salinibacter ruber M8]
          Length = 237

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             +   + A       ++L+L+CG G   L  ++R  + V  VE  +  +  AR N    
Sbjct: 63  EALFGLIDARIYLEGAEVLDLFCGTGALGLEAISRGAELVTFVERKREVINYARENAEKI 122

Query: 255 HVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            V +    ++  + E+ +  +       + D     Y+   +   P
Sbjct: 123 GVADKCIFIQGDAVEYLRTYQGPALDLIMADP---PYKLDAMKEMP 165


>gi|294495951|ref|YP_003542444.1| ArsR family transcriptional regulator [Methanohalophilus mahii DSM
           5219]
 gi|292666950|gb|ADE36799.1| transcriptional regulator, ArsR family [Methanohalophilus mahii DSM
           5219]
          Length = 349

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L  G G  S + AR   +   V+ V++ +  V  AR N     ++NV+  +   +  
Sbjct: 171 VLDLGSGGGFDSFIAARKVGKTGKVIGVDMTEDMVAKARKNAEKYELDNVEFRQGDIESL 230


>gi|229080081|ref|ZP_04212609.1| Methyltransferase type 11 [Bacillus cereus Rock4-2]
 gi|228703205|gb|EEL55663.1| Methyltransferase type 11 [Bacillus cereus Rock4-2]
          Length = 261

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  +++    A
Sbjct: 79  AKVFIKQNGHENVSFVAGNAENLPFA 104


>gi|218295486|ref|ZP_03496299.1| Protein of unknown function methylase putative [Thermus aquaticus
           Y51MC23]
 gi|218244118|gb|EED10644.1| Protein of unknown function methylase putative [Thermus aquaticus
           Y51MC23]
          Length = 171

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 13/110 (11%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L      +G  L+LY G+G   L  A        VE  K ++   R N     +  V+IV
Sbjct: 35  LRLRYPKRGRFLDLYAGSGAVGLEAASEGFEATLVEKDKEAIALLRDNAKRAGLK-VRIV 93

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            +  + F            L +      R+   F+ PP      A    +
Sbjct: 94  PLPVEVF------------LPEAKAKGERYTVAFMAPPYPMDLAALFQAL 131


>gi|158321032|ref|YP_001513539.1| methyltransferase type 11 [Alkaliphilus oremlandii OhILAs]
 gi|158141231|gb|ABW19543.1| Methyltransferase type 11 [Alkaliphilus oremlandii OhILAs]
          Length = 248

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           G   + +E ++         +LEL CG GN ++ LA    R+  V+I++  +  A  N A
Sbjct: 22  GAWANYVEELMTNDNRKPKKILELACGTGNITIPLANKGYRLTGVDISEDMLMVA-KNKA 80

Query: 253 ANHVNNVKIVRMSSKEF 269
            +   NV  ++    E 
Sbjct: 81  IDSNQNVLFIQQDMVEL 97


>gi|83816067|ref|YP_446184.1| hypothetical protein SRU_2078 [Salinibacter ruber DSM 13855]
 gi|83757461|gb|ABC45574.1| conserved hypothetical protein TIGR00095 [Salinibacter ruber DSM
           13855]
          Length = 204

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             +   + A       ++L+L+CG G   L  ++R  + V  VE  +  +  AR N    
Sbjct: 30  EALFGLIDARIYLEGAEVLDLFCGTGALGLEAISRGAELVTFVERKREVINYARENAEKI 89

Query: 255 HVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            V +    ++  + E+ +  +       + D     Y+   +   P
Sbjct: 90  GVADKCIFIQGDAVEYLRTYQGPALDLIMADP---PYKLDAMKEMP 132


>gi|326332390|ref|ZP_08198668.1| S-adenosylmethionine-dependent methyltransferase [Nocardioidaceae
           bacterium Broad-1]
 gi|325949798|gb|EGD41860.1| S-adenosylmethionine-dependent methyltransferase [Nocardioidaceae
           bacterium Broad-1]
          Length = 357

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 12/131 (9%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV-NN 258
           V  A       +L++ CG G  S+ LAR +    VL ++I +PSV+ A  N     V + 
Sbjct: 169 VHDALSAPGCRILDVGCGGGWSSIALARAYPEATVLGIDIDQPSVDMAVANAREAGVEDR 228

Query: 259 VKIVRMSSKEFTQ-----AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           V+ +   +    +     A   E   +  + +D+ S   KT+        +D+A      
Sbjct: 229 VRFLCQDAATVQEGTVDMAFAFECVHDMPRPVDVLSAVRKTLAPGGSMVVMDEAVADSFA 288

Query: 314 AY----PHILY 320
                   I+Y
Sbjct: 289 PDGDELERIMY 299


>gi|289167969|ref|YP_003446238.1| protoporphyrinogen oxidase [Streptococcus mitis B6]
 gi|288907536|emb|CBJ22373.1| protoporphyrinogen oxidase [Streptococcus mitis B6]
          Length = 278

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 14/114 (12%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+   +L V  R LI R                ++E +LA     
Sbjct: 61  QLAAHKPAQYIIGQTDFYGMQLKVDERVLIPRPE-----------TEELVELILAENSEE 109

Query: 210 QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
              +L++  G+G  +LVLA  R    V A +I++ +++ A  N   N   N+  
Sbjct: 110 SLKVLDIGTGSGAIALVLAKNRAAWSVTAADISQEALDLASENAK-NQKFNIFF 162


>gi|229179181|ref|ZP_04306535.1| Methyltransferase type 11 [Bacillus cereus 172560W]
 gi|228604079|gb|EEK61546.1| Methyltransferase type 11 [Bacillus cereus 172560W]
          Length = 261

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  +++    A
Sbjct: 79  AKVFIKQNGHENVSFVAGNAENLPFA 104


>gi|153007508|ref|YP_001368723.1| hypothetical protein Oant_0163 [Ochrobactrum anthropi ATCC 49188]
 gi|151559396|gb|ABS12894.1| conserved hypothetical protein 95 [Ochrobactrum anthropi ATCC
           49188]
          Length = 386

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 22/161 (13%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH--MLEWVLAA--TKGIQGDLLELYCGNGN 222
           E   +    + +     SF           H   ++ ++      G    +L L+   G 
Sbjct: 164 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSYMDGLIRDGVKSGRSVKVLNLFGYTGV 223

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFN 280
            SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F Q   R   F 
Sbjct: 224 ASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVQREERRGSF- 282

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHIL 319
                      +  I +DPP  G         + +  P ++
Sbjct: 283 -----------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV 312


>gi|297841295|ref|XP_002888529.1| hypothetical protein ARALYDRAFT_475764 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334370|gb|EFH64788.1| hypothetical protein ARALYDRAFT_475764 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 358

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 59/183 (32%), Gaps = 30/183 (16%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ---------PNAGINVHMLEWVLA 204
             +  ++    D V E +T   + L          Q             +N        A
Sbjct: 117 HGHAGEVWFGDD-VMEIVTSWTKDLCVEIS-----QKNMSVSDNDVTTEVNDQ------A 164

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                  ++L+L  GNG     LA+  F  +   + ++ +VE A++    +   N++ + 
Sbjct: 165 EKYLSSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSEGAVELAQHLSQRDGYPNIRFMV 224

Query: 264 MS--SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
                 +  Q  +   +   L  I +H            R    D+   +V     ++  
Sbjct: 225 DDILDTKLEQQFKLVMDKGTLDAIGLHPDGPVK------RVMYWDSVSKLVAPGGILVIT 278

Query: 322 SCN 324
           SCN
Sbjct: 279 SCN 281


>gi|290968895|ref|ZP_06560432.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781191|gb|EFD93782.1| conserved hypothetical protein [Megasphaera genomosp. type_1 str.
           28L]
          Length = 406

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 14/123 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G F+L  A+     V A++++  +V  A  N   N + 
Sbjct: 220 YNRRAVAGLAAGKHVLDCFTHTGAFALNAAKGGAAAVTAIDVSAEAVAMAEENSRRNGLA 279

Query: 258 NVKIV-RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAY 315
           +V  V + +  E    +                 ++  I +DPP       TVG  V+ Y
Sbjct: 280 SVVTVQQANVFELLTQLAA-----------AKCNKYDFIILDPPAFTKSGKTVGRAVRGY 328

Query: 316 PHI 318
             I
Sbjct: 329 KEI 331


>gi|193216650|ref|YP_001999892.1| protoporphyrinogen oxidase [Mycoplasma arthritidis 158L3-1]
 gi|193001973|gb|ACF07188.1| protoporphyrinogen oxidase [Mycoplasma arthritidis 158L3-1]
          Length = 235

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 18/116 (15%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                   +L+L CG+G   L + ++    V  V+I+K +++ +  N   N+++ VKI+ 
Sbjct: 70  QYLNKNSKVLDLGCGSGFIGLAIKKNIGCYVTLVDISKQAIKQSELNAKLNNLD-VKII- 127

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                      +   F+ +K+      RF  I  +PP     +     +   P I 
Sbjct: 128 -----------KSNWFSNVKN----DERFDVIVSNPPYLNRKNHFAKSLSYEPKIA 168


>gi|206971803|ref|ZP_03232752.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus AH1134]
 gi|206733188|gb|EDZ50361.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus AH1134]
          Length = 261

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEF 269
           A+  I  N   NV  V  +++  
Sbjct: 79  AKVFIKQNGHENVSFVAGNAENL 101


>gi|328856218|gb|EGG05340.1| hypothetical protein MELLADRAFT_64121 [Melampsora larici-populina
           98AG31]
          Length = 284

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAA 253
             M E ++   +G +   L+L CG G  +  L R   F +V+ ++ ++P ++ A+ +   
Sbjct: 24  QQMYETIMKYHQGEKEVALDLGCGTGIVTTDLLRLGEFKKVIGIDPSEPMIDYAKESRKD 83

Query: 254 NHVNNVKIVRMSSKEFTQA 272
             +   +     ++E   A
Sbjct: 84  LGL---EFRVGRAEELDWA 99


>gi|218289573|ref|ZP_03493793.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius LAA1]
 gi|218240223|gb|EED07406.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius LAA1]
          Length = 218

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           M EW L       G  +L++ CG G  +L LA    RV A+++ +  ++  R      H+
Sbjct: 1   MTEWWLEQVPLWAGAAVLDVGCGTGATALRLAERGMRVTALDVRQEMIDRVRDRARQAHL 60

Query: 257 NNVKIVRMSSKEF 269
             +  V  S++  
Sbjct: 61  T-LDTVVGSAEAI 72


>gi|169830047|ref|YP_001700205.1| hypothetical protein Bsph_4631 [Lysinibacillus sphaericus C3-41]
 gi|168994535|gb|ACA42075.1| Hypothetical ybxB protein [Lysinibacillus sphaericus C3-41]
          Length = 202

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 17/117 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I G + ++ CG G   L +A+      V  ++I + +V  ++ N   N V NV+I 
Sbjct: 56  QMPNIDGAIFDIGCGYGPIGLSIAKANPDRTVCMMDINERAVALSQKNAQVNGVQNVRIF 115

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                              L  +D        +   P R+G +        AY  ++
Sbjct: 116 VSD---------------GLSMVDKDIEAAAILTNPPIRAGKETIFRFYDGAYDRLV 157


>gi|126654237|ref|ZP_01726031.1| hypothetical protein BB14905_22023 [Bacillus sp. B14905]
 gi|126589295|gb|EAZ83452.1| hypothetical protein BB14905_22023 [Bacillus sp. B14905]
          Length = 200

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 17/117 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I G + ++ CG G   L +A+      V  ++I + +V  ++ N   N V NV+I 
Sbjct: 54  QMPNIDGAIFDIGCGYGPIGLSIAKANPDRTVCMMDINERAVALSQKNAQVNGVQNVRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                              L  +D        +   P R+G +        AY  ++
Sbjct: 114 VSD---------------GLSMVDKDIEAAAILTNPPIRAGKETIFRFYDGAYDRLV 155


>gi|75859106|ref|XP_868893.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4]
 gi|40747596|gb|EAA66752.1| hypothetical protein AN9511.2 [Aspergillus nidulans FGSC A4]
          Length = 187

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEI 239
            ++++       +   + E V  A+   +  L++++ G G  ++  AR     RV A+E 
Sbjct: 63  TDDAWFGVTPEPVATKIAEQVAHASPPERKILVDVFAGAGGNTIAFARSGHWKRVYAIEK 122

Query: 240 AKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRER 277
              ++  A++N     V + +   +    +  ++  ++ 
Sbjct: 123 DPATLRCAQHNAEVYGVADKITWFQGDCFDILKSQLKDL 161


>gi|302814623|ref|XP_002988995.1| hypothetical protein SELMODRAFT_128902 [Selaginella moellendorffii]
 gi|300143332|gb|EFJ10024.1| hypothetical protein SELMODRAFT_128902 [Selaginella moellendorffii]
          Length = 452

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           + +++ G G F++  A+    V A ++   SVE    N   N V N +    M ++EF +
Sbjct: 227 ICDMFAGVGPFAIPAAQKGCLVYANDLNPASVEYLLKNADVNKVGNRIVAYNMDAREFMK 286

Query: 272 AMRRE 276
            +   
Sbjct: 287 ELVNP 291


>gi|242129429|gb|ACS83764.1| N-methyl transferase [Nonomuraea sp. WU8817]
          Length = 372

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 49/151 (32%), Gaps = 21/151 (13%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L  V        G  L+L  G G  +L  +   DRV AVEI   +    R NIA N + +
Sbjct: 134 LALVHRMVTHRGGHTLDLCAGPGVQALTASLRSDRVTAVEINPVAAALCRTNIAMNGLGD 193

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT---IFVDPPRSGLD------DATV 309
              VR+   +   A+  E   + + +  +             D  R G D      D   
Sbjct: 194 RMEVRL--GDLYGAVPGEVFDDIVSNPPLLPVPEDVQFAFVGDGGRDGFDISWTILDGLP 251

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHT 340
             +        + C          +LS  + 
Sbjct: 252 EHLSDRGACRIVGC----------VLSDGYV 272


>gi|162450418|ref|YP_001612785.1| putative methyltransferase [Sorangium cellulosum 'So ce 56']
 gi|161161000|emb|CAN92305.1| putative Methyltransferase [Sorangium cellulosum 'So ce 56']
          Length = 206

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N H++  V        G  L+  CG+G  +L LA H  +V AV+ +  ++   +    A 
Sbjct: 29  NAHLIAEVAGL---RPGRALDAGCGHGAETLWLAAHGWKVTAVDFSASALAHGQSTAEAL 85

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
             +  + +     +          F+ +  + +H        V    SG+       +  
Sbjct: 86  GADIAERIAWVEGDLAVWTPPRDHFDLVVCLYVHVAGSVEDMVRRMASGVAPGGALFMVG 145

Query: 315 YPHILYISCNPDS 327
           +  I     +P +
Sbjct: 146 HRPI-----DPAT 153


>gi|21228448|ref|NP_634370.1| methyltransferase [Methanosarcina mazei Go1]
 gi|20906928|gb|AAM32042.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 279

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 26/69 (37%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +          +L++  G G  ++ +AR    V AVE +   +   + NI    + N+ 
Sbjct: 57  RIKDLKLSPDSRVLDIGSGPGTLAIPIARQVAHVTAVEPSDGMMNVMQENIKEYGIENID 116

Query: 261 IVRMSSKEF 269
            V    +  
Sbjct: 117 TVHKDWEAV 125


>gi|51244705|ref|YP_064589.1| hypothetical protein DP0853 [Desulfotalea psychrophila LSv54]
 gi|50875742|emb|CAG35582.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 281

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 31/54 (57%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            +L++  G+G  +L +A+   RV A++ ++  ++  +   AA  ++N++ +  +
Sbjct: 67  TVLDIGAGSGTLALPIAKKVQRVTAIDYSQGMLDQLQSEAAAAGIDNIETICCA 120


>gi|315443843|ref|YP_004076722.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
 gi|315262146|gb|ADT98887.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Mycobacterium sp. Spyr1]
          Length = 206

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +N  + E          G  L+L CG G  +L LA H   V+ V+I+  ++  A      
Sbjct: 23  VNRWLAEVAAPL---KPGRALDLGCGEGGDTLWLAEHGWEVVGVDISDTALRRAAEEADK 79

Query: 254 NHVNNVKIVRMSSKEFTQAMR 274
             +     V++   + + +  
Sbjct: 80  RGL--ADRVQLRQTDLSASFP 98


>gi|302342175|ref|YP_003806704.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Desulfarculus baarsii DSM 2075]
 gi|301638788|gb|ADK84110.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Desulfarculus baarsii DSM 2075]
          Length = 291

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 19/110 (17%)

Query: 195 NVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
              ++E  V    +  +  +L+L  G G  +L LA      RVLA +I+  ++  AR N 
Sbjct: 101 TELLVERGVALLAQAERPKILDLCTGGGAVALALASQLPTARVLACDISAQALAYARQNA 160

Query: 252 AANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A  +   V  ++                   + +      F  I  +PP
Sbjct: 161 QALGLEERVSFLQG---------------PLWEPVAATGGFFDLITANPP 195


>gi|270291186|ref|ZP_06197409.1| 16S RNA methylase RsmC [Pediococcus acidilactici 7_4]
 gi|270280582|gb|EFA26417.1| 16S RNA methylase RsmC [Pediococcus acidilactici 7_4]
          Length = 201

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 20/112 (17%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMS 265
            Q  +L++ CG G   + LA+ F   RV   ++ + ++  A  N  AN      ++    
Sbjct: 58  PQSSILDVGCGYGPMGIALAKQFPEARVEMTDVNERALALAERNAEANGVAARTRVYHSD 117

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           + E                  +    F T+  +PP          ++     
Sbjct: 118 AYE-----------------AVAKTDFTTVVSNPPVRAGKTVVNAIITGAKE 152


>gi|221061937|ref|XP_002262538.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
           knowlesi strain H]
 gi|193811688|emb|CAQ42416.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
           knowlesi strain H]
          Length = 515

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 41/224 (18%)

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
           + +   ++        ++     ++ L +  ++A++ ++  +++     +   RL + LH
Sbjct: 231 DNIPGLIIDRYHDYVSIQHLTLGMELLAATINEAVMEVLNPKVIL-FRNDNKERLNERLH 289

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ-IENSFTQPNAG--INVHMLE 200
             K            KI   +  + E++ +      +   + NS   PN G   N   L 
Sbjct: 290 IYK------------KIVHGK--LPEQVILKENNCFFFIDMLNS---PNTGWFHNRRHLR 332

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            +++        +L+L+   G+F +  ++     +VL VE  +     A  +   N++ N
Sbjct: 333 QLISDY-AYDKKVLDLFSYVGSFGIQCSKKGKAKKVLCVEKDRKFTNLAEESAYMNNLRN 391

Query: 259 --VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++ V   +  F +  +                 F  + +DPP
Sbjct: 392 KDIEFVCSDAITFLENCKEL---------------FDIVILDPP 420


>gi|117164477|emb|CAJ88023.1| putative SAM-dependent methyltransferase [Streptomyces ambofaciens
           ATCC 23877]
          Length = 217

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            + +        +L++ CG G+ S ++A    +V  V++A   VE A+  + A  +   +
Sbjct: 38  RLASWLPATPASVLDVGCGTGSLSRLVAEAGHQVTGVDLAPKMVEQAQGKLRAAGLEG-R 96

Query: 261 IVRMSSKE 268
            +   + +
Sbjct: 97  FLIGDAAD 104


>gi|34556476|ref|NP_906291.1| hypothetical protein WS0017 [Wolinella succinogenes DSM 1740]
 gi|34482190|emb|CAE09191.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 391

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L A       +L+L+C  G F +  L +     L ++ ++ + E  + N++ N + N 
Sbjct: 207 RLLLAEMAKGKRVLDLFCNGGGFGIHALLKGAKEALFIDSSEMACEQVKKNLSLNQLENK 266

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPHI 318
             +                F+ LK +     +F  I +DPP      +   G +  + ++
Sbjct: 267 GRI-----------ISANVFDELKGLREREEKFDLIILDPPSFAKTKEQQKGAMNGWKYL 315

Query: 319 L 319
           +
Sbjct: 316 I 316


>gi|311896515|dbj|BAJ28923.1| hypothetical protein KSE_31130 [Kitasatospora setae KM-6054]
          Length = 393

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
            L +L CG G  ++ LAR    VLAV+  + + E AR N AA  V   V++ R    +  
Sbjct: 99  RLADLCCGIGGDAIALARAGIAVLAVDRDELTCEVARANAAALGVAKLVEVRRADVADVD 158

Query: 271 QAM------RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
            A          R  ++ +  D  +Y     +      G     + +    PH
Sbjct: 159 TAGFDAVFTDPARRTSQGRVFDPEAYSPPLSWAVEAARGARFGALKVAPGIPH 211


>gi|302786670|ref|XP_002975106.1| hypothetical protein SELMODRAFT_102633 [Selaginella moellendorffii]
 gi|300157265|gb|EFJ23891.1| hypothetical protein SELMODRAFT_102633 [Selaginella moellendorffii]
          Length = 452

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           + +++ G G F++  A+    V A ++   SVE    N   N V N +    M ++EF +
Sbjct: 227 ICDMFAGVGPFAIPAAQKGCLVYANDLNPASVEYLLKNADVNKVGNRIVAYNMDAREFMK 286

Query: 272 AMRRE 276
            +   
Sbjct: 287 ELVNP 291


>gi|256810806|ref|YP_003128175.1| methyltransferase small [Methanocaldococcus fervens AG86]
 gi|256794006|gb|ACV24675.1| methyltransferase small [Methanocaldococcus fervens AG86]
          Length = 210

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 19/116 (16%)

Query: 213 LLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +++L CG G   L +        R + ++I K S+E A+ N    +V+ V    M  ++ 
Sbjct: 50  VIDLGCGTG--RLAIGSKILGAKRAIGIDIDKESIETAKENAKKANVD-VDFYCMDIRDV 106

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-----TVGMVQAYPHILY 320
                       L DI       K + +  P  G          +        I+Y
Sbjct: 107 DNEF--------LNDILGEGKNLKKVVIQNPPFGAQKKHADRIFLDKALEIGDIIY 154


>gi|209918453|ref|YP_002292537.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli SE11]
 gi|209911712|dbj|BAG76786.1| putative methyltransferase [Escherichia coli SE11]
 gi|324017538|gb|EGB86757.1| protein-(glutamine-N5) methyltransferase [Escherichia coli MS
           117-3]
          Length = 277

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 5/126 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA        +L+L  G G  +L LA  R    ++AV+    +V   + N     
Sbjct: 98  LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLTQRNAQHLA 157

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N+ I++    ++  A+  ++    + +      +   +     R     A V      
Sbjct: 158 IKNIHILQ---SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGM 214

Query: 316 PHILYI 321
             I++I
Sbjct: 215 ADIVHI 220


>gi|183598964|ref|ZP_02960457.1| hypothetical protein PROSTU_02408 [Providencia stuartii ATCC 25827]
 gi|188021180|gb|EDU59220.1| hypothetical protein PROSTU_02408 [Providencia stuartii ATCC 25827]
          Length = 281

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  LA     +  +L+L  G G  +L +A  R    ++ ++    +V  A+ N     
Sbjct: 98  LVEQALARLPAQRCQILDLGTGTGAIALAIASERPDSVIIGIDFNLDAVSLAQRNQQRLA 157

Query: 256 VNNVKIVRMS 265
           +NNV+ ++  
Sbjct: 158 LNNVQFLQSD 167


>gi|169627345|ref|YP_001700994.1| hypothetical protein MAB_0240 [Mycobacterium abscessus ATCC 19977]
 gi|169239312|emb|CAM60340.1| Conserved hypothetical protein (thiopurine S-methyltransferase?)
           [Mycobacterium abscessus]
          Length = 222

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A   ++G++L+  CG G  ++  AR    V  V++A  ++  AR N     V   + V
Sbjct: 33  LVALGAVRGEVLDPGCGTGWHAIEYARAGCSVTGVDLAPTAIARARNNTRTAGVE-AQFV 91

Query: 263 RMSSK 267
              + 
Sbjct: 92  LGDAT 96


>gi|167721287|ref|ZP_02404523.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           DM98]
          Length = 300

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  V+I   +VEAAR+N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGVDIDPQAVEAARHNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|152977514|ref|YP_001377031.1| HemK family modification methylase [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026266|gb|ABS24036.1| modification methylase, HemK family [Bacillus cytotoxicus NVH
           391-98]
          Length = 283

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 25/177 (14%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  +  
Sbjct: 102 VLERIQRNFGNQELHVADIGTGSGAISITLALENQNLHVYTVDIAQESIEVAKQNATSLG 161

Query: 256 VNNVKIVRMSSKE-FTQAMRREREF----NRLKDIDIHSYRFKTIFVDPPRSGLDDA--- 307
             NV          F +  ++          + + D           +P R+ +  A   
Sbjct: 162 A-NVTFYHGDLLSPFYETGKKLDVVVSNPPYIPEEDWKGLSSVVKEHEPKRALVGGADGL 220

Query: 308 --TVGMVQAYPHILYISCNPDSLCRDLSILSTT-HTIERLALF--DQFPYTRHMECG 359
                 ++  P +L          + L          E +     D FP+  H+E  
Sbjct: 221 DFYRRFMEELPRVL--------QKKALVAFEVGVGQGEDVKGLLEDTFPH-AHVEVV 268


>gi|116626473|ref|YP_828629.1| type 11 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229635|gb|ABJ88344.1| Methyltransferase type 11 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 420

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +N HM  +  AA       +L+  CG G  S  LA   + V  ++IA  +VE AR +   
Sbjct: 19  LNEHMARYNFAARLTRGKRVLDAGCGAGYGSAELAHSAEHVTGIDIAAEAVEFARAHYER 78

Query: 254 NHVNNVKIVRMSSKEF 269
               N+   + S  E 
Sbjct: 79  ---PNLTFEQASCTEL 91


>gi|254190971|ref|ZP_04897477.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157938645|gb|EDO94315.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 302

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  V+I   +VEAAR+N   N  
Sbjct: 158 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGVDIDPQAVEAARHNSERNRA 215

Query: 257 N 257
           +
Sbjct: 216 D 216


>gi|23010556|ref|ZP_00051202.1| COG0500: SAM-dependent methyltransferases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 250

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L+ +          +L+L CG G+ +  +A H   V A+++++  ++A         + N
Sbjct: 34  LQALARMGALPHAAVLDLGCGGGHVTYAVAPHVRSVTALDLSRAMLDAVEAEARRRGLAN 93

Query: 259 VKIVRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           V+  + S +         + +      +   D+       + +     R GL D  
Sbjct: 94  VQTRQASVEALPFPDASFERVLSRYSAHHWSDVPAALREARRVLSPEGRFGLVDVV 149


>gi|317491513|ref|ZP_07949949.1| hypothetical protein HMPREF0864_00712 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316921060|gb|EFV42383.1| hypothetical protein HMPREF0864_00712 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 397

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 16/122 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
            + A        +L  +   G F++  L    + V++V+ ++ +++ AR N+  N ++  
Sbjct: 212 RLAARRFAANAKVLNCFSYTGAFAVSALMGGCEHVISVDTSQAALDVARQNVELNQLDLS 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP 316
             + VR    +  +  R E              +F  I +DPP+   +     G  + Y 
Sbjct: 272 KAEFVRDDVFQLLRKYRDE------------GRKFDLIIMDPPKFVENKSQLAGACRGYK 319

Query: 317 HI 318
            I
Sbjct: 320 DI 321


>gi|282861349|ref|ZP_06270414.1| methyltransferase [Streptomyces sp. ACTE]
 gi|282564007|gb|EFB69544.1| methyltransferase [Streptomyces sp. ACTE]
          Length = 194

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            + +LY G+G   L  L+R    VL VE    +    R N+    +   ++    ++   
Sbjct: 48  RVADLYAGSGAVGLEALSRGAVHVLLVEADAKAARTVRENVRTLGLPGAEVRTGKAETTV 107

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                             +  +  +F+DPP +  D     ++
Sbjct: 108 TG-------------PAPADPYDAVFLDPPYAASDADLREIL 136


>gi|288576289|ref|ZP_06394294.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria mucosa ATCC
           25996]
 gi|288565811|gb|EFC87371.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria mucosa ATCC
           25996]
          Length = 239

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L ++ +  +     +L++ CG G  S  +A+     V  +++A+ S++ A+ +
Sbjct: 36  HDINPLRLGYIDSFAQLAGKRVLDVGCGGGILSESMAKRGAAHVTGIDMAEKSLQTAQAH 95

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            AA  V+N+    +  ++         +     ++  H      I 
Sbjct: 96  AAAEGVDNIDYRCIRVEDLAAEQPHSFDVVTCMEMMEHVPNPAAIV 141


>gi|254180592|ref|ZP_04887190.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1655]
 gi|184211131|gb|EDU08174.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1655]
          Length = 300

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  V+I   +VEAAR+N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGVDIDPQAVEAARHNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|15838113|ref|NP_298801.1| protoporphyrinogen oxidase [Xylella fastidiosa 9a5c]
 gi|18203344|sp|Q9PD67|HEMK_XYLFA RecName: Full=Protein methyltransferase hemK homolog; AltName:
           Full=M.XfaHemK2P
 gi|9106546|gb|AAF84321.1|AE003981_3 protoporphyrinogen oxidase [Xylella fastidiosa 9a5c]
          Length = 275

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L       +  + +L  G+G  +L +A  R   +VLA + +  +++ A  N 
Sbjct: 91  TETLVEQALQRLDHASERRVADLGTGSGAIALAIACERPQAQVLATDNSAAALDIAARNA 150

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +A+ +N+V         + +A+  ER              F  I  +PP
Sbjct: 151 SAHGLNHVVFREGD---WYEALLGER--------------FDLIVSNPP 182


>gi|299541918|ref|ZP_07052241.1| hypothetical protein BFZC1_23249 [Lysinibacillus fusiformis ZC1]
 gi|298725656|gb|EFI66297.1| hypothetical protein BFZC1_23249 [Lysinibacillus fusiformis ZC1]
          Length = 200

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 17/117 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I G + ++ CG G   L +A+      V  ++I + +V  ++ N   N V NV+I 
Sbjct: 54  QMPDIDGAIFDVGCGYGPIGLSIAKTNPDRTVFMMDINERAVALSQKNAQVNGVQNVRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                              L  +D        +   P R+G +        AY  ++
Sbjct: 114 VSD---------------GLSMVDNDVDAAAILTNPPIRAGKETIFRFYDGAYDRLV 155


>gi|254169095|ref|ZP_04875932.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
 gi|197621934|gb|EDY34512.1| Met-10+ like-protein [Aciduliprofundum boonei T469]
          Length = 346

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 213 LLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++L+ G G F+L LA+     ++ A E    +      NI  N + N+  +   ++  +
Sbjct: 196 IVDLFAGIGYFTLPLAKYGRVKKIYACEKNPIAYRYLLENIELNQLENIIPLFGDNRNIS 255

Query: 271 QAMRRER 277
                +R
Sbjct: 256 PLKIADR 262


>gi|73540455|ref|YP_294975.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           eutropha JMP134]
 gi|72117868|gb|AAZ60131.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           eutropha JMP134]
          Length = 217

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 24/160 (15%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++LE+  G+G  + +LA     VL V+I    V  AR N+
Sbjct: 63  PRVEARILQELAVRKHE---NVLEIGAGSGYMAALLANRARHVLTVDIVPELVTLARQNL 119

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A   V NV +   +                  D    +  +  I +      +  + +  
Sbjct: 120 ANAGVTNVDVAEGN----------------AADGWAAAAPYDVICISGSLPAIPQSMLAQ 163

Query: 312 VQAYPHI-LYISCNPDSLCRDLSILSTTHTIERLALFDQF 350
           ++    I  ++   P    R ++ LS         + + F
Sbjct: 164 IKVGGRIAAFVGSLPVMEARLVTRLSD----TEYQVVNLF 199


>gi|20095120|ref|NP_614967.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
 gi|19888415|gb|AAM02897.1| SAM-dependent methyltransferase [Methanopyrus kandleri AV19]
          Length = 207

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 19/123 (15%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           H+++ +L   KG    +L++ C  G  +  LA   DRV+ V+I +  VEA++   + N +
Sbjct: 27  HLVKEILRDLKGC-CRVLDVGCATGYLTRKLAAVCDRVVGVDINRKMVEASQ---SRNRL 82

Query: 257 NNVKIVRMSS---------------KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            NVK VR  +                E  Q +   R    +  +     R   +  DP  
Sbjct: 83  PNVKFVRADAHNLPFPDACFDGIVLSEILQHLDVIRALKEVDRVAARGCRMAVVLPDPTS 142

Query: 302 SGL 304
              
Sbjct: 143 RAA 145


>gi|20092579|ref|NP_618654.1| arsenite S-adenosylmethyltransferase [Methanosarcina acetivorans
           C2A]
 gi|19917855|gb|AAM07134.1| ubiE/COQ5 methyltransferase [Methanosarcina acetivorans C2A]
          Length = 249

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 20/134 (14%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L  G G  S + A+      +V+ V++ +  V+ A+ N      +NV+  +   +  
Sbjct: 77  VLDLGSGAGFDSFLAAQRVGSLGKVIGVDMTQEMVKKAQDNARKYGYSNVEFRQGDIEAL 136

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN----- 324
               R          I++   + K                 +++    + Y+S       
Sbjct: 137 PLDDRSVDVIISNCVINLAPDKEKVF----------REAFRVLKPGGRM-YVSDMVLLED 185

Query: 325 -PDSLCRDLSILST 337
            P+ L  D  +L+ 
Sbjct: 186 LPEDLKNDCDLLAG 199


>gi|262377114|ref|ZP_06070339.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter lwoffii
           SH145]
 gi|262307852|gb|EEY88990.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter lwoffii
           SH145]
          Length = 242

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++    +  AR +  
Sbjct: 34  INPLRLNWIDEHAGGLSGKKVLDVGCGGGILAESMARRGANVLGIDMGAAPLNVARIHAE 93

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
              V+N++  ++  ++  +    + +     ++  H     +I 
Sbjct: 94  QEGVSNIEYRQVPVEQLAEEQAGQYDIVTCMEMLEHVPDPASII 137


>gi|221101377|ref|XP_002169665.1| PREDICTED: similar to trimethylguanosine synthase homolog, partial
           [Hydra magnipapillata]
          Length = 198

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A   + V+A++I    +E AR N A   V N +  +         
Sbjct: 39  VIDAFCGIGGNTIQFALKSNHVIAIDIDPVRLECARQNAAIYGVENRISFILGDFFVLAP 98

Query: 272 AMRREREF 279
           +++ +  F
Sbjct: 99  SLKADVVF 106


>gi|328946333|gb|EGG40477.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           SK1087]
          Length = 276

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 37/192 (19%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E +   RD L     Q QL+       I    D++   L V  R LI R           
Sbjct: 46  EVSQEDRDQLKTI--QEQLLAHRPAQYINGRSDFLGLSLKVDERVLIPRPE--------- 94

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYN 250
                ++E +L+        +L++  G+G  +L LA  R   ++ A +++  ++  A  N
Sbjct: 95  --TEELVELILSENPESSLSVLDIGTGSGAIALALANSRSDWQITASDLSGDALALAEEN 152

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDA 307
             +  + N+  V+                     +D  S +F  I  +PP    +  D+ 
Sbjct: 153 AQSCGL-NLAFVQSDC------------------LDAISGKFDIIVSNPPYISEADKDEV 193

Query: 308 TVGMVQAYPHIL 319
            + ++ + PH+ 
Sbjct: 194 GLNVLTSEPHMA 205


>gi|167517126|ref|XP_001742904.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779528|gb|EDQ93142.1| predicted protein [Monosiga brevicollis MX1]
          Length = 205

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
            +   +++ +CG G  ++ +A    +VLA+++    +EAAR+N +   V + +  V   +
Sbjct: 42  AVGPMVIDAFCGPGANAIQMALAGCQVLAIDLDPVKLEAARHNASIYGVEDQIDFVHGDA 101

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
               + +               S R   +F+ PP  G
Sbjct: 102 VSVLRQLASTN----------GSTRVDAVFLSPPWGG 128


>gi|77360090|ref|YP_339665.1| methyltransferase [Pseudoalteromonas haloplanktis TAC125]
 gi|123589279|sp|Q3IKJ0|RLMI_PSEHT RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|76875001|emb|CAI86222.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
           methyltransferase activity and a PUA domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 396

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                       +L  +   G FSL  L      V  V++++P+++ A+ N+  N+++ +
Sbjct: 212 RAALERFSKDKTVLNCFSYTGTFSLYALRGGCKHVTNVDVSQPALDTAKRNVEHNNLD-L 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
             V    ++  + +R+ RE   L         F TI +DPP+   + A   G  + Y  I
Sbjct: 271 DKVDFVKQDVFKLLRQYREDGVL---------FDTIVMDPPKFADNKAQLTGACRGYKDI 321


>gi|282865730|ref|ZP_06274780.1| methylase [Streptomyces sp. ACTE]
 gi|282559374|gb|EFB64926.1| methylase [Streptomyces sp. ACTE]
          Length = 228

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 18/103 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++  V     G   D+L+L  G+G  +L  A+   RV AV++A+ +V  AR N       
Sbjct: 31  LMAAVNREEIGPGTDVLDLGTGSGALALHAAQRGARVTAVDVARRAVMTARLNALIRR-- 88

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             + + +   +   A+                  +  +  +PP
Sbjct: 89  --RRISVHRSDLLSAL--------------PGRSYDLVICNPP 115


>gi|238023623|ref|YP_002907855.1| SAM-dependent methyltransferase [Burkholderia glumae BGR1]
 gi|237878288|gb|ACR30620.1| SAM-dependent methyltransferase [Burkholderia glumae BGR1]
          Length = 249

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 14/126 (11%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY--NIAANHVNNVK 260
                     +L+L CG G F++ LA    RV+A + ++  V  AR   N  A     V+
Sbjct: 32  AERIGPQHRRVLDLGCGTGAFAVRLASVGHRVVACDPSERMVGYARRRPNAEA-----VQ 86

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            +   +       RR         + +  + F+ +  D   + +      M+      ++
Sbjct: 87  WIVGEA-------RRVPRVPPFDVVTMTGHAFQCVLGDDEMADMLRTVRAMLATGGRFMF 139

Query: 321 ISCNPD 326
            S NP 
Sbjct: 140 ESRNPA 145


>gi|197286507|ref|YP_002152379.1| hypothetical protein PMI2678 [Proteus mirabilis HI4320]
 gi|194683994|emb|CAR45274.1| conserved hypothetical protein [Proteus mirabilis HI4320]
          Length = 274

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 14/124 (11%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +++++           LL++ CG G+ S+ +A  F +++ ++ +   +  A+   A   +
Sbjct: 48  YLIKFREMMDFSDAETLLDVGCGPGSISIHVADKFKKIIGIDYSTGMLTVAKRRAAQAGI 107

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           ++   +             E  ++ L   DI      T+ +D     L  A + + +   
Sbjct: 108 HHANFLH---------YSWEDNWDALPPCDIAVASRSTLVMD-----LKAALLKLNRQAK 153

Query: 317 HILY 320
             +Y
Sbjct: 154 LRVY 157


>gi|167625622|ref|YP_001675916.1| hypothetical protein Shal_3717 [Shewanella halifaxensis HAW-EB4]
 gi|167355644|gb|ABZ78257.1| conserved hypothetical protein [Shewanella halifaxensis HAW-EB4]
          Length = 363

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 7/109 (6%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIV 262
           A       +L L+          A     RV+ V+ +  ++ A R N A N   +  + +
Sbjct: 170 AANSQDKSVLNLFSYTCGIGTAAAVGGAKRVVNVDFSSFALAAGRKNAALNQAEDVCEFI 229

Query: 263 RMSSKEFTQAMRREREFNRLKD-----IDIHSYRFKTIFVDPPRSGLDD 306
           +  +    + +   +   R          + +  F  +F+DPPR     
Sbjct: 230 QSDAFPALRQLAGLKVGGRRNQKLPSYPKLSATEFDLVFLDPPRYAKSP 278


>gi|325103656|ref|YP_004273310.1| hypothetical protein Pedsa_0916 [Pedobacter saltans DSM 12145]
 gi|324972504|gb|ADY51488.1| hypothetical protein Pedsa_0916 [Pedobacter saltans DSM 12145]
          Length = 395

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 16/110 (14%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  +++L  G G   L  A+   +V+  E      E  ++N     +NN+      S E 
Sbjct: 90  KTSVIDLTGGFGVDDLYFAQRAKKVIHCERNASLSEIVKHNTEMLGINNIDFFVGDSAE- 148

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                      RL +++       TI++DP R         +    P+++
Sbjct: 149 -----------RLMELE----SIDTIYIDPSRRSAHGRVFLLEDCEPNVI 183


>gi|308051466|ref|YP_003915032.1| 16S rRNA m(2)G-966 methyltransferase [Ferrimonas balearica DSM
           9799]
 gi|307633656|gb|ADN77958.1| 16S rRNA m(2)G-966 methyltransferase [Ferrimonas balearica DSM
           9799]
          Length = 206

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 18/127 (14%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W++  T+G    +L+ + G+G  SL  L+R       +E+   +      N+A
Sbjct: 48  VRETLFNWLMQDTRG--ARVLDCFAGSGALSLEALSRFAASATMLELDSAAARQLMANLA 105

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
               +N K++   S  F                      +  +F+DPP R GL    +  
Sbjct: 106 TLKADNGKVISGDSLAFLAKPAEAP--------------YDIVFIDPPFRKGLLAPCIEH 151

Query: 312 VQAYPHI 318
           +    ++
Sbjct: 152 LSQNGYL 158


>gi|283769207|ref|ZP_06342111.1| conserved hypothetical protein [Bulleidia extructa W1219]
 gi|283104183|gb|EFC05562.1| conserved hypothetical protein [Bulleidia extructa W1219]
          Length = 288

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 172 TVAGRTLIYRQIENSFTQP--NAGINVHMLEW---VLAATKGIQGDLLELYCGNGNFSLV 226
           T+  + L ++     F           +  +W   ++ + +G +  +L L+   G  +L 
Sbjct: 75  TIGYQNLRFKVSPTGFKHTGLFPEQAANW-DWMHDLIQSRQGKETRILNLFAYTGGATLA 133

Query: 227 LARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            A      V+ V+ +K  V+ A+ N   +H+ N K +R   ++  + + RE+   R    
Sbjct: 134 CAEAGASEVVHVDASKGMVQWAKENRDFSHLQNHK-IRFIVEDCLKFVEREKRRGR---- 188

Query: 286 DIHSYRFKTIFVDPPRSGLDD 306
                 +  I +DPP  G   
Sbjct: 189 -----TYHGILMDPPSYGRGP 204


>gi|228965835|ref|ZP_04126909.1| Methyltransferase type 11 [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228793826|gb|EEM41355.1| Methyltransferase type 11 [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 171

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGQDLQYVVQQVASRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEE 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  ++++   A
Sbjct: 79  AKGFIKQNGHGNVSFVVGNAEDLPFA 104


>gi|189238201|ref|XP_968451.2| PREDICTED: similar to CG9666 CG9666-PA [Tribolium castaneum]
          Length = 296

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 22/137 (16%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARY 249
             +  HML  V +    I G  + +L CG G  S+  A      V+  EI + ++   + 
Sbjct: 118 PHLGAHMLYTVQSQYGDIGGKFVADLGCGCGALSIGAAVLDASLVVGFEIDEDALGTFQE 177

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N+    V N+  V+    +           NR          F T+ ++PP     ++ +
Sbjct: 178 NVEDQDVGNIDCVQCDVVKMMP--------NRFHK------TFDTVIMNPPFGTKHNSGI 223

Query: 310 GM------VQAYPHILY 320
            M      ++   H++Y
Sbjct: 224 DMKFLEVALRLSNHVVY 240


>gi|167904337|ref|ZP_02491542.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           NCTC 13177]
          Length = 300

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  V+I   +VEAAR+N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGVDIDPQAVEAARHNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|15805670|ref|NP_294366.1| N-6 adenine-specific DNA restriction methylase [Deinococcus
           radiodurans R1]
 gi|6458345|gb|AAF10222.1|AE001922_2 N-6 adenine-specific DNA restriction methylase, putative
           [Deinococcus radiodurans R1]
          Length = 186

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 17/117 (14%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
              A  G     ++L+ G+G   L  A    RV  +E    +V A   N     + N ++
Sbjct: 40  AARAPAGRFPHFVDLHGGSGAIGLEAASRGYRVTLIEKDSRAVGALERNARGLGL-NARV 98

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            +  +              +L      + +   IF DPP      A    V +   +
Sbjct: 99  FKGDA------------LGQLP----RAGQADIIFSDPPYQADIPAVARAVLSSGAV 139


>gi|54298227|ref|YP_124596.1| hypothetical protein lpp2285 [Legionella pneumophila str. Paris]
 gi|53752012|emb|CAH13438.1| hypothetical protein lpp2285 [Legionella pneumophila str. Paris]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
              ++E  L      +   +L+L  G+G  +L LA+      + A + +K ++E ARYN 
Sbjct: 97  TERLVELALELIPDKENVSVLDLGTGSGAIALALAKERPLWHIDACDFSKEALELARYNA 156

Query: 252 AANHVNNVKIVR 263
               +NN+    
Sbjct: 157 KTLGLNNINFYH 168


>gi|332671019|ref|YP_004454027.1| type 11 methyltransferase [Cellulomonas fimi ATCC 484]
 gi|332340057|gb|AEE46640.1| Methyltransferase type 11 [Cellulomonas fimi ATCC 484]
          Length = 305

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             H+  +V AA       +L++  G+G    +LA     V+ V+++  +V  A+   A  
Sbjct: 26  AEHVTRYVAAAELVRGKRVLDIASGSGYGGHLLAETAASVVGVDVSAQAVAYAQEKFAR- 84

Query: 255 HVNNVKIVRMSSKEF 269
             +N++  +  + + 
Sbjct: 85  --DNLEFRQGDATQI 97


>gi|322370324|ref|ZP_08044883.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
 gi|320550032|gb|EFW91687.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
          Length = 277

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A+      +L+L  G G F   LA        RV+ V++    VE AR N+  N   NV+
Sbjct: 83  ASLETGDTVLDLGSGAG-FDCFLAAREVGESGRVIGVDMTPEMVEKARENVVKNDATNVE 141

Query: 261 IVRMSSKEF 269
                 +  
Sbjct: 142 FRLGEIEHL 150


>gi|311744735|ref|ZP_07718531.1| SAM-dependent methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311311852|gb|EFQ81773.1| SAM-dependent methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 383

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/197 (20%), Positives = 62/197 (31%), Gaps = 13/197 (6%)

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           L   + L + + QA++  I  R   ++      RLR     R +   L+  A        
Sbjct: 2   LATFEQLLTPAGQALLAEIAQRAGVESDLGLGTRLR-----RHHDAGLVAAAVTQNHLRG 56

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           R         A     +  +E S       +  H             G +++L CG G  
Sbjct: 57  RAASKFGPDAAHLYFTHDALEQS---TRRRVADH---RAARLRAAGVGRVVDLGCGIGAD 110

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            + +AR    V  VE        AR N+AA  +    +    +     A   E  F    
Sbjct: 111 LIAVARTGIAVRGVERDPVRTAVARANLAALGLPG-TVEVGDATSVDLA-DDEVAFVDPA 168

Query: 284 DIDIHSYRFKTIFVDPP 300
             D     F T  + PP
Sbjct: 169 RRDGRGRVFGTDGLQPP 185


>gi|295047695|dbj|BAJ05884.1| putative SAM-dependent methyltransferase [Streptomyces sp. SANK
           60405]
          Length = 206

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 9/150 (6%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEW---VLAATKGIQGDLLELYCGNGNFSLVLA 228
               R   Y +        N+        W   +       +G LL++ CG G +SL++ 
Sbjct: 3   HWDRRAESYDETPG-----NSLTAEQAAAWKSLLAEIYPVHRGRLLDIGCGTGTYSLLMG 57

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                V  V+ ++  +E AR           V    +++++ +         N L  +  
Sbjct: 58  ELGFDVHGVDTSQRMIERARAKALGCGAGAAVTFSTLAAQDISGRYDAVFSRNVLWTVAD 117

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                + +     ++ +  A   +    P 
Sbjct: 118 PGRLAEVVREHTTQAAVWAAVETVWDGRPK 147


>gi|229070368|ref|ZP_04203614.1| Methyltransferase type 11 [Bacillus cereus F65185]
 gi|228712763|gb|EEL64692.1| Methyltransferase type 11 [Bacillus cereus F65185]
          Length = 256

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  VNSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  +++    A
Sbjct: 79  AKVFIKQNGHENVSFVAGNAENLPFA 104


>gi|209883716|ref|YP_002287573.1| methyltransferase type 12 [Oligotropha carboxidovorans OM5]
 gi|209871912|gb|ACI91708.1| methyltransferase type 12 [Oligotropha carboxidovorans OM5]
          Length = 280

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
              +    + A   G +  + ++  G G  +L  A+    V A+++++  ++  + N+AA
Sbjct: 40  QAEYTRLQIEAMKIGPEDTVADIGAGPGRITLQAAQRAGSVTAIDVSREMLDHLKANVAA 99

Query: 254 NHVNNVKIVRMSSKEFTQ----------AMRREREFNRLKDIDIHS--YRFKTIFVDPPR 301
             + NV  + +S  +                R      L+ +D  +  Y F   F  P  
Sbjct: 100 RGLRNVHPLHLSWHDVVPGENVPLHDIVVASRSPAMRDLRKLDALARKYVFVMTFCGPSL 159

Query: 302 SGLDDATVGMVQAYP 316
               D  V  ++  P
Sbjct: 160 KSFHDELVTGIEPEP 174


>gi|167825880|ref|ZP_02457351.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           9]
 gi|167895951|ref|ZP_02483353.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           7894]
 gi|167912596|ref|ZP_02499687.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           112]
 gi|167920549|ref|ZP_02507640.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           BCC215]
          Length = 300

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  V+I   +VEAAR+N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGVDIDPQAVEAARHNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|20093502|ref|NP_613349.1| RNA methylase [Methanopyrus kandleri AV19]
 gi|19886334|gb|AAM01279.1| Predicted RNA methylase [Methanopyrus kandleri AV19]
          Length = 204

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 39/192 (20%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNI 251
            I   +L             +L+L  G G   +  A      V  VE+   +VE AR N+
Sbjct: 31  EIVRVLLSIADREFGLECSRVLDLGAGTGRIGIGAALAGACEVTCVEVDSKAVEVARRNV 90

Query: 252 AANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDD 306
               V + V++V    ++F                     ++    ++PP    R G D 
Sbjct: 91  KRAGVEDRVEVVEADVRDFEP-----------------EDQYDVTIMNPPFGAQRRGADR 133

Query: 307 ATVGMVQAYPHILYISCNPDS----LCRDLSILSTTHTIERLALFD-----QFPY----T 353
             V +       + +S +         R    L  T   + + +        +P+     
Sbjct: 134 PFVEVALEASSGV-VSLHRAGTEEFWKRRARELGAT--CDAIGVVRFPIPAMYPHHRSRI 190

Query: 354 RHMECGVLLVRK 365
           RH++  VL+ +K
Sbjct: 191 RHVDAVVLVFKK 202


>gi|126453605|ref|YP_001067742.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1106a]
 gi|226196830|ref|ZP_03792409.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314839|ref|ZP_04813855.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1106b]
 gi|126227247|gb|ABN90787.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1106a]
 gi|225931090|gb|EEH27098.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           Pakistan 9]
 gi|242138078|gb|EES24480.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1106b]
          Length = 302

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  V+I   +VEAAR+N   N  
Sbjct: 158 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGVDIDPQAVEAARHNSERNRA 215

Query: 257 N 257
           +
Sbjct: 216 D 216


>gi|326435501|gb|EGD81071.1| generic methyltransferase [Salpingoeca sp. ATCC 50818]
          Length = 868

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 6/119 (5%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            +   +++            +L++ CG G  +  LAR F+ VL V+I+   ++AA+    
Sbjct: 651 KVTQLLVD-AAREHGVATDRVLDIGCGVGGTTFALARAFESVLGVDISASFIDAAQQLKE 709

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
              +          KE            +  D     ++       PP +G   A +  
Sbjct: 710 EGSLPYFIREEGDIKE-----EAVVGLPQGVDPARVEFKQMDAMCIPPDTGSFSAVLAA 763


>gi|300712208|ref|YP_003738022.1| N-methyltransferase-like protein [Halalkalicoccus jeotgali B3]
 gi|299125891|gb|ADJ16230.1| N-methyltransferase-like protein [Halalkalicoccus jeotgali B3]
          Length = 235

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           E V +A   ++G  +LE+ CG G F+ +LA     V+ ++I+   +   R       +  
Sbjct: 34  EAVSSALGDLEGKKVLEIACGTGRFTAMLAARGAEVVGLDISDAMLSQGREKARVAGLSE 93

Query: 258 NVKIVRMSSKEF------TQAMRREREFNRLKDID 286
            V+ VR  +           A+   R F+ + + D
Sbjct: 94  RVEFVRGDAARLPFPDGHFDAVLAMRFFHLIPNPD 128


>gi|294496905|ref|YP_003560605.1| methyltransferase [Bacillus megaterium QM B1551]
 gi|294346842|gb|ADE67171.1| methyltransferase [Bacillus megaterium QM B1551]
          Length = 248

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 26/141 (18%)

Query: 166 YVDERLTVAGRTLIYRQ----IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           Y DERL         R        SF      ++  +L    A     +G+L++L  GNG
Sbjct: 5   YGDERLDYLLADEEMRIIQSPSVFSF-----SLDAVLLSH-FAYVPIRKGNLVDLCSGNG 58

Query: 222 NFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF 279
              L L++    +++ VEI +     A+ +IA N ++  +K++    K   Q        
Sbjct: 59  VIPLFLSKRTKGKIIGVEIQERLHSMAQRSIAYNQLDGQIKMIHGDLKNAPQ-------- 110

Query: 280 NRLKDIDIHSYRFKTIFVDPP 300
                 ++   ++  +  +PP
Sbjct: 111 ------ELGYGKYDVVTCNPP 125


>gi|294054907|ref|YP_003548565.1| transcriptional regulator, ArsR family [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614240|gb|ADE54395.1| transcriptional regulator, ArsR family [Coraliomargarita
           akajimensis DSM 45221]
          Length = 310

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L  G G  S +LAR  ++V+ V+ +   VE        N   N+       +E   A
Sbjct: 150 IADLGAGEGLISQLLARRAEKVICVDNSPKMVEVGTELAKKNGFTNLTYKLGDIEEVPLA 209


>gi|288819057|ref|YP_003433405.1| methyltransferase type 11 [Hydrogenobacter thermophilus TK-6]
 gi|288788457|dbj|BAI70204.1| methyltransferase type 11 [Hydrogenobacter thermophilus TK-6]
 gi|308752640|gb|ADO46123.1| Methyltransferase type 11 [Hydrogenobacter thermophilus TK-6]
          Length = 199

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 199 LEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +E  L+A    + ++  +L CG G F++ LA    +V AV++ +  +E          + 
Sbjct: 24  IEVFLSAVNPSEEEVWADLGCGPGYFTIPLASKVKKVYAVDLEERMLEVCASRAKEEGIT 83

Query: 258 NVKIV 262
           N++++
Sbjct: 84  NMELI 88


>gi|183982650|ref|YP_001850941.1| methyltransferase [Mycobacterium marinum M]
 gi|183175976|gb|ACC41086.1| methyltransferase [Mycobacterium marinum M]
          Length = 217

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 2/111 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                     G  L+L CG G  ++ LAR    VL ++I+  ++  AR     + V+   
Sbjct: 67  QAHLKLVPTAGRALDLGCGQGLGAVWLARRGLDVLGLDISPVAIAQARDLAERSGVS--A 124

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                  +    +      + +   +    R     +D    G   A V +
Sbjct: 125 RCCFDVVDLDDGLPDGPPVDVIVCHNFRDRRLDAAIIDRLAPGGLVALVAL 175


>gi|328948517|ref|YP_004365854.1| hypothetical protein Tresu_1660 [Treponema succinifaciens DSM 2489]
 gi|328448841|gb|AEB14557.1| protein of unknown function Met10 [Treponema succinifaciens DSM
           2489]
          Length = 415

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E +     G +  +L+ +   G F L  +      V++V+I++ +V+    NI+ N    
Sbjct: 233 EKIKKFCHGKK--VLDTFTHTGAFGLNAVKAGAREVVSVDISQEAVDMVEKNISLNG--- 287

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                  ++E  +A+  +  F+ LK  +    +F  I +DPP        + 
Sbjct: 288 -------AEEKMKAVCADV-FDLLKQYEASGEKFDVIILDPPAFTKKAGKIE 331


>gi|301629495|ref|XP_002943875.1| PREDICTED: protein methyltransferase hemK homolog [Xenopus
           (Silurana) tropicalis]
          Length = 269

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 22/125 (17%)

Query: 195 NVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVL-ARHF-DRVLAVEIAKPSVEAARYNI 251
              +++W L      +   + +L  G+G  +L L ++    +VLAV+ +  ++  AR N 
Sbjct: 73  TETLVDWALELLAPHVAPRIADLGTGSGAIALALQSQRADAQVLAVDASAGALAVARANA 132

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +                      F R   +D  +  F  I  +PP    DD  +  
Sbjct: 133 MRLGL-------------------PVRFVRCHWLDGVAGPFDAIVANPPYIRADDPHLAA 173

Query: 312 VQAYP 316
           ++  P
Sbjct: 174 LRHEP 178


>gi|300710727|ref|YP_003736541.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|299124410|gb|ADJ14749.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
          Length = 264

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 212 DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L+L  G G    + AR      RV+ V++    VE AR N   N    V       + 
Sbjct: 83  TVLDLGSGGGFDCFLAARRVGPEGRVIGVDMTPEMVEKARKNAEKNDAGTVSFRLGEIEH 142

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIF 296
              A            I++ + + +   
Sbjct: 143 LPVADESVDAIVSNCVINLSADKPRVFA 170


>gi|296327944|ref|ZP_06870479.1| polypeptide chain release factor methyltransferase HemK
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154900|gb|EFG95682.1| polypeptide chain release factor methyltransferase HemK
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 383

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 47/115 (40%), Gaps = 19/115 (16%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNI 251
              ++E  +   + ++  ++L++  G+G  S+ +A       V  ++I + +++ A  N 
Sbjct: 180 TEILVEQCIQLMREVEEPNILDIGSGSGAISIAVANELKSSSVTGIDINEKAIKLAIENK 239

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
             N + NV  +               E N    +D   +++  I  +PP    ++
Sbjct: 240 ILNKIENVNFI---------------ESNLFGKLD-KDFKYDLIVSNPPYISKEE 278


>gi|282861118|ref|ZP_06270183.1| modification methylase, HemK family [Streptomyces sp. ACTE]
 gi|282563776|gb|EFB69313.1| modification methylase, HemK family [Streptomyces sp. ACTE]
          Length = 281

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 67/189 (35%), Gaps = 40/189 (21%)

Query: 129 DAWRECAIRLRDALHARKY-QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
            + R  A  L   +H  K  ++  +  A+      D  Y +       R  +      +F
Sbjct: 21  PSPRFDAEELAAFVHGVKRGELHNVPDAD-----FDARYWETVARREAREPLQHITGRAF 75

Query: 188 T-----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHF-- 231
                 Q   G+         ++ W + A +    ++  +++L  G+G  +L +A+    
Sbjct: 76  FRYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPLIVDLCTGSGAIALAMAQEVPR 135

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV  VE+++ ++   R N   + V                + R+   + L + D    +
Sbjct: 136 SRVHGVELSEDALRWTRKNAEGSRVT---------------LHRQDALSALPEFD---GQ 177

Query: 292 FKTIFVDPP 300
              +  +PP
Sbjct: 178 VDLVISNPP 186


>gi|222525800|ref|YP_002570271.1| putative SAM-dependent methyltransferase [Chloroflexus sp.
           Y-400-fl]
 gi|222449679|gb|ACM53945.1| putative SAM-dependent methyltransferase [Chloroflexus sp.
           Y-400-fl]
          Length = 298

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 200 EWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+     +  Q   L L+   G  SL LAR    V  V+ +KP+V  A+ N A   + +
Sbjct: 110 DWLARQVQRRSQPRALVLFGYTGLSSLHLARCGAHVTHVDASKPAVRWAQENQALAELTD 169

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------LDDATV 309
            + +R    +  + + RE              R+  I +DPP  G         L +   
Sbjct: 170 -RPIRWLIDDVGKFVARELR---------RGNRYDLILLDPPVFGRGPNGEIWRLHEQLP 219

Query: 310 GMVQAYPHIL 319
            ++     +L
Sbjct: 220 HLLAQCARLL 229


>gi|47230129|emb|CAG10543.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 404

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 22/235 (9%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
           F     L    +      ++ E +L A L Q   +TS   +  V  I H  L +      
Sbjct: 95  FDVAEELQKYALQLTYHNLKTEEVLEAVLPQGQDVTSAFSR--VGHIAHMNLREHQLPYR 152

Query: 136 IRLRDALHARKYQIQLIGRANKTKIC--LDRDYVDERLTVAGRTLIYRQIENS------F 187
             +   +  +   I  +   NKT I     R++  E L      ++ +  EN       F
Sbjct: 153 NLIGQVIIDKNPGITCVV--NKTNIIDSTYRNFKMEML-AGEENMVAKVKENGVTYQFDF 209

Query: 188 TQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           ++   N  ++      V    +G    + +++ G G F++  AR    V+A ++   S +
Sbjct: 210 SRVYWNPRLSTEHQRVVQLVQRGDA--VFDVFAGVGPFAIPAARLGATVVANDLNPESYK 267

Query: 246 AARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             ++N   N V + V+   +  + F Q   ++     L  +     R   +   P
Sbjct: 268 WLQHNCRLNKVESKVRTFNLDGRAFIQGPLKQ----ELPALLKEKKRVHVVMNLP 318


>gi|21220344|ref|NP_626123.1| precorrin-6Y C5,15-methyltransferase [Streptomyces coelicolor
           A3(2)]
 gi|14041580|emb|CAC38791.1| putative precorrin-6Y C5,15-methyltransferase [Streptomyces
           coelicolor A3(2)]
          Length = 410

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +    LA      GD + ++  G+G+ ++  AR    V AVE     V   R N AA+ 
Sbjct: 236 EVRALALARLGPRPGDLVWDVGAGSGSVAVECARLGAAVTAVERTPDGVGRVRANAAAHG 295

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           V+ +++V  ++      +    E      +        +I  +  R       V  V A 
Sbjct: 296 VD-LRVVHGAAPAVLAGL---DEVPDAVFVGGGGRELPSIVAECARRARRSVVVA-VAAL 350

Query: 316 PHI 318
             +
Sbjct: 351 DRV 353


>gi|154247015|ref|YP_001417973.1| ubiquinone biosynthesis O-methyltransferase [Xanthobacter
           autotrophicus Py2]
 gi|154161100|gb|ABS68316.1| ubiquinone biosynthesis O-methyltransferase [Xanthobacter
           autotrophicus Py2]
          Length = 247

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A        +L++ CG G  S  LAR   +V  ++ A  +VE AR + AA+ +  V  
Sbjct: 56  ARALRPLKGLSILDIGCGGGLLSEPLARMGGQVRGIDPAPGNVEIARAHAAASGLA-VDY 114

Query: 262 VRMSSKEFT 270
             ++++E  
Sbjct: 115 EAVTAEELA 123


>gi|189501357|ref|YP_001960827.1| hypothetical protein Cphamn1_2452 [Chlorobium phaeobacteroides BS1]
 gi|189496798|gb|ACE05346.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
          Length = 402

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 18/124 (14%)

Query: 200 EWVLAATKGIQG----DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           E       G+QG     LL++  G G  ++  A  FD V+  E      + A +N     
Sbjct: 79  ERAACYKSGLQGMSGTRLLDMSGGLGIDTIFFAERFDEVVYCERDAVVAKIAEHNFRELG 138

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++NV ++   S +  +    E               F  IF+DP R      +  +    
Sbjct: 139 ISNVTVIHGDSVKTLETFPDE--------------SFDLIFIDPARREKGRRSAALEAGS 184

Query: 316 PHIL 319
           P ++
Sbjct: 185 PDVV 188


>gi|332286876|ref|YP_004418787.1| hypothetical protein PT7_3623 [Pusillimonas sp. T7-7]
 gi|330430829|gb|AEC22163.1| hypothetical protein PT7_3623 [Pusillimonas sp. T7-7]
          Length = 199

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 3/121 (2%)

Query: 194 INVHMLEWVLAATKG--IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
           +   +  W+     G   +  +L+L+ G G       +R    V  VE   P++ A R  
Sbjct: 33  VRETLFNWLHHFWDGDYSKKRVLDLFAGTGALGFEAASRGVAHVQMVETHPPAIAALRAL 92

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                 ++V+I    ++E  + M        + D          ++   P     D  + 
Sbjct: 93  RTQLKADHVRIHAGDAQEALKRMTENSFDLIMLDPPFGQAWLDRLWAGLPAVLTPDGLLY 152

Query: 311 M 311
           +
Sbjct: 153 I 153


>gi|307544298|ref|YP_003896777.1| 16S ribosomal RNA methyltransferase [Halomonas elongata DSM 2581]
 gi|307216322|emb|CBV41592.1| 16S ribosomal RNA m2G1207 methyltransferase [Halomonas elongata DSM
           2581]
          Length = 329

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 18/93 (19%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             QG +L++ CG+G  +  LAR    V A ++   +VEA R  +A N +           
Sbjct: 188 PNQGSVLDMGCGDGIIAAWLARRGLAVTAADVNGFAVEATRRTLATNGLEG--------- 238

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                      F+      +   RF  I  +PP
Sbjct: 239 ---------EVFHSDVYAGLPQTRFDAIVSNPP 262


>gi|298251954|ref|ZP_06975757.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297546546|gb|EFH80414.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 259

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
             T+ + G LL+L CG G  +L +A    +V  V+I    +E AR       V+ +  V 
Sbjct: 37  QWTRSLGGPLLDLACGTGRIALRMAAEGYQVTGVDIVPEMIERARQKAIQQGVS-IDWVV 95

Query: 264 MSSKEF 269
             ++ F
Sbjct: 96  ADARTF 101


>gi|283779141|ref|YP_003369896.1| methyltransferase type 11 [Pirellula staleyi DSM 6068]
 gi|283437594|gb|ADB16036.1| Methyltransferase type 11 [Pirellula staleyi DSM 6068]
          Length = 361

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 212 DLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           ++L++ CG G   + LA  F        + ++ ++EAA    AA ++ N++     + + 
Sbjct: 180 EVLDVGCGRGRAMIALAERFPHSQFTGYDFSEEAIEAATREAAAKNLANIRFAVRDAAKI 239

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                R+ +     D      R   +  +  R+ LD   
Sbjct: 240 DD--HRQYDLITAFDAIHDQARPDLVLANIARALLDGGV 276


>gi|269121290|ref|YP_003309467.1| ribosomal protein L11 methyltransferase [Sebaldella termitidis ATCC
           33386]
 gi|268615168|gb|ACZ09536.1| ribosomal protein L11 methyltransferase [Sebaldella termitidis ATCC
           33386]
          Length = 303

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 109/295 (36%), Gaps = 49/295 (16%)

Query: 52  WHDGDDLYHIMFDQQTKERMR-------------IDYFMPGS-----LLINALMIEMMAT 93
           W      Y+  F ++TKE++              ID+F   +       I      ++  
Sbjct: 3   WLRVKVDYYSDFIKETKEKIIGIFSELGVNEFEFIDFFTENALDFHKESIVNDTWTIIGY 62

Query: 94  IRLEPLLRAKLFQIDYLT---SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
                  R KL  +       S++++ I T+  +   ++ W++     +   H  K   +
Sbjct: 63  FPNNKFARLKLKMLSEKLEELSETEEMIFTVYTNECDENEWKDEW---KKYFHTTKITDK 119

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN-SF---TQPNAGINVHMLEWVLAAT 206
           ++ + +            E  T +    + +     +F   T     + + MLE      
Sbjct: 120 IVIKPS-----------WEDYTPSEGETVIKIDPGMAFGTGTHETTSLCIKMLEK----Y 164

Query: 207 KGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEA-ARYNIAANHVNNVKIVRM 264
              + +LL++ CG+G   +V A+   ++V  ++I   +VE+ A+ N+  N ++N  +V  
Sbjct: 165 AQGKKNLLDIGCGSGILMIVGAKLGAEKVDGIDIDP-AVESVAKENLEDNEIDNFSVVIG 223

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +  + T         N L D  +         ++P   G      G+++   H +
Sbjct: 224 NLVDDTDKKYDIVVSNILADTLMALLDDIEKVLEP---GALVIFSGILKTRKHEI 275


>gi|332157651|ref|YP_004422930.1| hypothetical protein PNA2_0007 [Pyrococcus sp. NA2]
 gi|331033114|gb|AEC50926.1| hypothetical protein PNA2_0007 [Pyrococcus sp. NA2]
          Length = 330

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E +       +G+++ +++ G G FS++LA+    V A ++   ++     N+  N V N
Sbjct: 172 ERMRIFRMAKEGEVVFDMFAGIGPFSILLAKKVRLVFASDLNPWAIRYLEENMRLNKVKN 231

Query: 259 VKIVRMSSKEF 269
           V  +   +K  
Sbjct: 232 VIPILSDAKRI 242


>gi|77360002|ref|YP_339577.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Pseudoalteromonas haloplanktis TAC125]
 gi|76874913|emb|CAI86134.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Pseudoalteromonas haloplanktis TAC125]
          Length = 279

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 19/118 (16%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I   R++    L V   TLI R                ++E  L         +L+L  G
Sbjct: 74  IIGQREFWSLSLEVNATTLIPRPD-----------TETLVEQALEMAVPSNAKVLDLGTG 122

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVK------IVRMSSKEF 269
            G  +L L       ++ AV+    +V  A  N     +NNV+         ++ ++F
Sbjct: 123 TGAIALALGSEMPTWQITAVDRVADAVALATRNQQRLAINNVQVKQSNWFSALNGEKF 180


>gi|326577374|gb|EGE27258.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           O35E]
          Length = 310

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W LAA +     +++  CG+G   +  L     +VLAV+I   +V A R N A N V+
Sbjct: 153 LDW-LAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVD 211

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +              +  E +  R ++  +       I    P  G       +++    
Sbjct: 212 DR---------LLAFLPAEFDDYRTQNPQLADVITANILA-KPLIGFAPLFHDLLKTGGL 261

Query: 318 IL 319
           I+
Sbjct: 262 IV 263


>gi|312877229|ref|ZP_07737198.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796038|gb|EFR12398.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 288

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 23/128 (17%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIA 252
              ++E  +   KG +    L++  G+G  ++ L +  D  VLAV+I++ ++E AR N  
Sbjct: 105 TEVLVEVAIEIFKGRKNLYFLDIGTGSGCIAVALCKFLDCNVLAVDISERALEVARKNAK 164

Query: 253 ANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            N V N +  +R +  E                    + +F  I  +PP    D+     
Sbjct: 165 LNGVENKILFIRSNLFENIP----------------QNLKFDAILSNPPYISKDEIF--- 205

Query: 312 VQAYPHIL 319
            +  P +L
Sbjct: 206 -ELDPRVL 212


>gi|254470255|ref|ZP_05083659.1| ribosomal protein L11 methyltransferase [Pseudovibrio sp. JE062]
 gi|211960566|gb|EEA95762.1| ribosomal protein L11 methyltransferase [Pseudovibrio sp. JE062]
          Length = 300

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV 256
           +LE      +     +L+L  G G   + LA+     VLA +I   ++EAA  N   N+V
Sbjct: 144 LLELQRLLKRHKYHRMLDLGTGTGVLGIALAKLTGSEVLATDIDPIAIEAAIDNARKNNV 203

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
             +       K FT A   +R FN     D+
Sbjct: 204 GPLF------KAFTGAGVEDRRFNEFGPFDL 228


>gi|220907673|ref|YP_002482984.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219864284|gb|ACL44623.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 272

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           G+   +L++ CG G  ++  A       +VL +++A+  ++ AR       + N++    
Sbjct: 44  GLGDRVLDVCCGTGASAIPAAVCVGPTGQVLGIDLAESLLQLARQKAQQQGLENIEFQCG 103

Query: 265 SSKEF 269
             +  
Sbjct: 104 DFENL 108


>gi|20090489|ref|NP_616564.1| hypothetical protein MA1634 [Methanosarcina acetivorans C2A]
 gi|19915510|gb|AAM05044.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 226

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N+ +    L  ++ + K      ++L CG GN ++ LA     V  V+ +  +++ A  N
Sbjct: 37  NSEMPPDALVELVQSEKVRPCKTIDLGCGAGNDAIYLAGQGFEVTGVDSSPTAIKIATEN 96

Query: 251 IAANHVNNVKIVR---MSSKEFTQAMRREREFNRLKDI 285
                V    IV        E  +      ++  L  I
Sbjct: 97  AQKKGVRCRFIVADFLGDLHEVKETFDFGYDWELLHHI 134


>gi|322496227|emb|CBZ31299.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 405

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
            E +    +G    LL L CG G ++++ AR     V+ V+ +   V+AAR     N + 
Sbjct: 70  YEVIFRNVRGKT--LLHLGCGMGLYTMLAARGMAKMVIGVDSSAI-VDAARVVAEQNGLK 126

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316
           N+  +R    +    +  + +F+ +    +         +       D          P 
Sbjct: 127 NILFIRGRLCDALHQLPADMKFDYVLCEWMGPLLLNERVLTDALYARDHLLTASGALCPN 186

Query: 317 ----HILYISCNP 325
               H++ +S  P
Sbjct: 187 RASLHVVAVSDYP 199


>gi|304385471|ref|ZP_07367816.1| methyltransferase domain protein [Pediococcus acidilactici DSM
           20284]
 gi|304328678|gb|EFL95899.1| methyltransferase domain protein [Pediococcus acidilactici DSM
           20284]
          Length = 201

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 20/112 (17%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMS 265
            Q  +L++ CG G   + LA+ F   RV   ++ + ++  A  N  AN      ++    
Sbjct: 58  PQSSILDVGCGYGPMGIALAKQFPEARVEMTDVNERALALAERNAEANGVAARTRVYHSD 117

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           + E                  +    F T+  +PP          ++     
Sbjct: 118 AYE-----------------AVAKTDFTTVVSNPPVRAGKTVVNAIITGAKE 152


>gi|302853268|ref|XP_002958150.1| hypothetical protein VOLCADRAFT_99370 [Volvox carteri f.
           nagariensis]
 gi|300256511|gb|EFJ40775.1| hypothetical protein VOLCADRAFT_99370 [Volvox carteri f.
           nagariensis]
          Length = 441

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 212 DLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
            +L++ CG G  S++ A+    RV+AV+ ++ +V+AAR  I AN +++ + +V    +E 
Sbjct: 117 TVLDVGCGLGLLSMLAAKAGAARVVAVDGSEGAVDAARRIIKANGLSDKITVVHGVLEEL 176

Query: 270 TQ 271
            +
Sbjct: 177 DE 178


>gi|288554716|ref|YP_003426651.1| ribosomal RNA methyltransferase [Bacillus pseudofirmus OF4]
 gi|288545876|gb|ADC49759.1| ribosomal RNA methyltransferase [Bacillus pseudofirmus OF4]
          Length = 201

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
              + G LL++ CG G   L +A       V  V++   +++ AR N   N ++NV I  
Sbjct: 55  MPEVSGALLDVGCGYGPIGLAVASIDKEREVHMVDVNVRALDLARKNAMNNGISNVDIYE 114

Query: 264 MS 265
             
Sbjct: 115 SD 116


>gi|297196954|ref|ZP_06914351.1| methyltransferase type 12 [Streptomyces sviceus ATCC 29083]
 gi|197715905|gb|EDY59939.1| methyltransferase type 12 [Streptomyces sviceus ATCC 29083]
          Length = 204

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N  +  H    +L +     GD L++ CG+G  +  LA     V  ++ +   +  AR +
Sbjct: 11  NTNVARH--PGILRSVPEGCGDALDVGCGDGLLARKLAGRAKHVTGIDKSPDMIACARES 68

Query: 251 IAANHVNNVKIVRMS 265
            A      +  V   
Sbjct: 69  AA--GDPQLTFVEGD 81


>gi|149463308|ref|XP_001520325.1| PREDICTED: similar to TRM5 tRNA methyltransferase 5 homolog (S.
           cerevisiae), partial [Ornithorhynchus anatinus]
          Length = 153

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266
             GDLL + + G G F++  A+    V A ++   S    R+N   N V+  V++  +  
Sbjct: 33  RPGDLLFDAFAGVGPFAVPAAKKKCVVFANDLNPESHRWLRHNCRLNKVDGQVRLFCLDG 92

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFK--TIFVDPPRS-GLDDATVGMVQAYPH 317
           ++F +   RE                    +   P  + G   A  G++   P 
Sbjct: 93  RDFLRGPVREELARGPGAGAGGGGGPSAHIVMNLPAAAVGFLGALRGLLSGLPR 146


>gi|45433633|gb|AAS60263.1| putative RNA methyltransferase [uncultured bacterium]
          Length = 182

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 7/78 (8%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAF-----QVPNLQIFRSEPIHYRMRAEFHIWHD-- 54
              L   +Y+ QLA K   ++  +              I    P  YR + +  +  D  
Sbjct: 87  GCQLQHIRYDAQLAHKRGVVQWALRNLPQTTGVTVLPTIGTENPWRYRNQVQVPVSWDTQ 146

Query: 55  GDDLYHIMFDQQTKERMR 72
            + L +  F   +    R
Sbjct: 147 TERLRYGFFATGSHALWR 164


>gi|27378697|ref|NP_770226.1| hypothetical protein bll3586 [Bradyrhizobium japonicum USDA 110]
 gi|27351846|dbj|BAC48851.1| bll3586 [Bradyrhizobium japonicum USDA 110]
          Length = 533

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 18/165 (10%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
           PN    +  +  + AA    +  +LEL CG G   L +A  +     + V+++  ++E  
Sbjct: 37  PNHLATIAAVYGMQAAPVE-RCRVLELGCGVGGNLLPMAFQYPNSEFVGVDLSGVTIERG 95

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + NIA   ++N+K++          M  +  F +   I  H          PP       
Sbjct: 96  QRNIATLGLSNIKLLHCD------IMNVDESFGQFDYIIAHG----VYSWVPPAVREKMM 145

Query: 308 TVGMVQAYPH-ILYISCN--PDSLCRDLSILSTTHTIERLALFDQ 349
            +      P  + Y+S N  P S  RDL      +   RL   D 
Sbjct: 146 MIFKQNMAPRGVCYVSYNAHPFSHLRDLVRDMMRYHTRRLT--DM 188


>gi|332526536|ref|ZP_08402648.1| hemK protein [Rubrivivax benzoatilyticus JA2]
 gi|332110804|gb|EGJ10981.1| hemK protein [Rubrivivax benzoatilyticus JA2]
          Length = 269

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 21/126 (16%)

Query: 195 NVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNI 251
              +++W L     G    + +L  G+G  +L +  AR    + A + +  ++  A  N 
Sbjct: 91  TEVLVDWALELLPPGAPARVADLGTGSGAIALAVKNARPQASLTATDRSAEALAVAADNA 150

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +  ++ V                        +   RF  +  +PP     D  +  
Sbjct: 151 GRLGLE-IEFVHGE-----------------WWSPLAGRRFDLVLSNPPYIAGADPHLTA 192

Query: 312 VQAYPH 317
           +Q  P 
Sbjct: 193 LQHEPR 198


>gi|268326089|emb|CBH39677.1| conserved hypothetical protein [uncultured archaeon]
          Length = 272

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
                 +L++  G G  ++ LA+    V AVE +   +E  + N   + + N+  +    
Sbjct: 59  MDSDSTVLDIGAGPGTLAIPLAKRVKSVTAVEPSIGMLECLKQNAVNDGLTNINYINKKW 118

Query: 267 KE 268
           +E
Sbjct: 119 EE 120


>gi|313901566|ref|ZP_07835009.1| SAM-dependent methyltransferase [Thermaerobacter subterraneus DSM
           13965]
 gi|313468180|gb|EFR63651.1| SAM-dependent methyltransferase [Thermaerobacter subterraneus DSM
           13965]
          Length = 427

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 19/117 (16%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAA------ 253
                       +L+ +C  G F+   L      V+AV+I +  +  AR N+        
Sbjct: 239 RAALRRYVRGARVLDAFCHTGAFTCHALVYGAREVVAVDIQEEVLAVARENVEQVRRQLG 298

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +    V     ++ +F +A   E E            R+  I +DPP    +   + 
Sbjct: 299 SGEARVTFHHANAFDFLRARAAEGE------------RYDVIILDPPAFAKNRQALA 343


>gi|259415189|ref|ZP_05739111.1| methyltransferase small [Silicibacter sp. TrichCH4B]
 gi|259349099|gb|EEW60853.1| methyltransferase small [Silicibacter sp. TrichCH4B]
          Length = 262

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 25/132 (18%)

Query: 188 TQP----NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAK 241
            QP     AG++  +L   + A  G    +LEL CG G   L LA      ++  VE+  
Sbjct: 25  FQPKSGYRAGVDPVLLAAAVNARPGQS--VLELGCGAGQAFLCLAARVQDLKITGVELQA 82

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP- 300
              E AR N A N          ++     A   +         D+   RF  +  +PP 
Sbjct: 83  AYAELARRNAAEN---------ATAAHVATANLSDL------PADLRQQRFDHVIANPPY 127

Query: 301 -RSGLDDATVGM 311
            R+G        
Sbjct: 128 YRAGAHSQASDA 139


>gi|254821299|ref|ZP_05226300.1| modification methylase, HemK family protein [Mycobacterium
           intracellulare ATCC 13950]
          Length = 308

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 65/181 (35%), Gaps = 39/181 (21%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
           LLD    +   R RDA+  R  ++ L       +  L         T A   +  R    
Sbjct: 50  LLDSPGEDFLGRYRDAVAVRSRRVPL-------QHLLG--------TAAFGPVQLRVGPG 94

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR------HFDRVLAVEI 239
            F  P       +LEW  A     +  +++L  G+G  ++ LA          R++A++ 
Sbjct: 95  VFI-PRPE-TEALLEWARAQRLAPRPVIVDLCTGSGALAVALAHQRAELGQEARIVALDN 152

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  ++E AR N        ++IVR    E             L  +D    R   I  +P
Sbjct: 153 SDAALEYARGNAEG---TAIEIVRADVTE----------PGVLPQLD---GRVDLIVANP 196

Query: 300 P 300
           P
Sbjct: 197 P 197


>gi|154151899|ref|YP_001405517.1| methyltransferase type 12 [Candidatus Methanoregula boonei 6A8]
 gi|154000451|gb|ABS56874.1| Methyltransferase type 12 [Methanoregula boonei 6A8]
          Length = 319

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
              A +      +L++  G G +++ LA    RV AVE +    EA   N+   +  +++
Sbjct: 76  RAAALSVPKGARVLDIGTGPGTYAVPLAARGCRVTAVEPSPVMREALAENMRERNAEDIR 135

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++    ++ T      +E     D+ I SY    + +    + + +   G +  +
Sbjct: 136 VIPKRWEDIT-----VQELGEPFDVVIASYSLTMMDIGKALAKMVECCAGTIHLF 185


>gi|120612309|ref|YP_971987.1| HemK family modification methylase [Acidovorax citrulli AAC00-1]
 gi|120590773|gb|ABM34213.1| [protein release factor]-glutamine N5-methyltransferase [Acidovorax
           citrulli AAC00-1]
          Length = 311

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 23/127 (18%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYN 250
              +++W L   + +    + +L  G+G  +L L         VLAV+ +  ++  AR N
Sbjct: 105 TETLVDWALEVLRPLPLPRVADLGTGSGAIALALRHGLPGAQVVLAVDASADALAVARAN 164

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
               H++ V  VR +                   +D  S  F  I  +PP    DD  + 
Sbjct: 165 ARRLHLS-VDFVRTN------------------WLDGISGPFDAIVSNPPYIEEDDPHLA 205

Query: 311 MVQAYPH 317
            +   P 
Sbjct: 206 ALVHEPR 212


>gi|42567181|ref|NP_194464.3| Met-10+ like family protein [Arabidopsis thaliana]
 gi|37202010|gb|AAQ89620.1| At4g27340 [Arabidopsis thaliana]
 gi|110742288|dbj|BAE99069.1| hypothetical protein [Arabidopsis thaliana]
 gi|332659926|gb|AEE85326.1| Met-10+ like family protein [Arabidopsis thaliana]
          Length = 619

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 2/110 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQ 271
           + +++ G G  +L  AR   RV A ++   +VE    N   N +   ++I  M  + F +
Sbjct: 447 VCDVFAGVGPIALAAARIVKRVYANDLNPHAVEFMEQNSVVNKLEKRIEIFNMDGRRFIK 506

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI-LY 320
           AM    +  ++  + ++  +     +D  R   +D       ++P I +Y
Sbjct: 507 AMFSSEKGQKVTQVVMNLPKDAAESLDAFRGVYNDRHRDEGLSFPTIHVY 556


>gi|266621434|ref|ZP_06114369.1| protein-(glutamine-N5) methyltransferase [Clostridium hathewayi DSM
           13479]
 gi|288866873|gb|EFC99171.1| protein-(glutamine-N5) methyltransferase [Clostridium hathewayi DSM
           13479]
          Length = 326

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 73/180 (40%), Gaps = 15/180 (8%)

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +V  + HR  ++   E +++ R     R+   +   R    +I   R+++    +V    
Sbjct: 40  MVHFLMHRN-EEVKDEDSVK-RTVADYRRMIEKRSERIPLQQITGSREFMGLEFSVNEYV 97

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVL 235
           LI RQ               ++E VL   +G   ++L+L  G+G   + L+       V 
Sbjct: 98  LIPRQD-----------TETLVEQVLKDFQGKNPEVLDLCTGSGCIGISLSILGGWQEVT 146

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
             +I+  ++  A+ N        +  +R+SS+   ++  R R  + L  ++  +   + I
Sbjct: 147 LADISLKALLVAKKNAEDLMTAKLHPIRLSSEGQKESPWRWRLTSELPGMEDKTAGVQNI 206


>gi|241236668|ref|XP_002400913.1| 26S protease regulatory subunit 6A, putative [Ixodes scapularis]
 gi|215496094|gb|EEC05735.1| 26S protease regulatory subunit 6A, putative [Ixodes scapularis]
          Length = 1014

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 6/116 (5%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
              E S+           +     +       +++ +CG G  ++  A     V+AV+I 
Sbjct: 832 ELDEESWFSVTPEGIAKHIAKRCQSDI-----VIDAFCGAGGNTIQFALVSRLVIAVDID 886

Query: 241 KPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
              +E AR N A    ++ ++ V     E    +R +  F  +        +  + 
Sbjct: 887 PKKIELARKNAAVYGVLDKIQFVLGDFLELAPRLRGDVVFLSMPWGGPEYLQSDSF 942


>gi|152980208|ref|YP_001354826.1| methylase [Janthinobacterium sp. Marseille]
 gi|151280285|gb|ABR88695.1| methylase [Janthinobacterium sp. Marseille]
          Length = 198

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 21/136 (15%)

Query: 194 INVHMLEWVLAATKGIQGDL--LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
           +   +  W+     G    +  L+L+ G G       +R   +V+ VE+  P+V      
Sbjct: 32  VRETVFNWINHLIDGSWSRVKCLDLFAGTGVLGFEAASRGAAQVVMVEMHTPAVRQLEAT 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-----SGLD 305
               H   + IVR  +    Q M R            ++ +F  IF+DPP        + 
Sbjct: 92  KEKLHAEQLSIVRGDALTAIQGMAR------------NAAKFDLIFLDPPYHQNWLEKML 139

Query: 306 DATVGMVQAYPHILYI 321
                ++     I+Y+
Sbjct: 140 PGCAQLLAKDG-IVYV 154


>gi|146095304|ref|XP_001467539.1| arginine N-methyltransferase [Leishmania infantum JPCM5]
 gi|321398884|emb|CBZ08333.1| putative arginine N-methyltransferase [Leishmania infantum JPCM5]
          Length = 405

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
            E +    +G    LL L CG G ++++ AR     V+ V+ +   V+AAR     N + 
Sbjct: 70  YEVIFRNVRGKT--LLHLGCGMGLYTMLAARGMAKMVIGVDSSAI-VDAARVVAEQNGLK 126

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316
           N+  +R    +    +  + +F+ +    +         +       D          P 
Sbjct: 127 NILFIRGRLCDALHQLPADMKFDYVLCEWMGPLLLNERVLTDALYARDHLLTASGALCPN 186

Query: 317 ----HILYISCNP 325
               H++ +S  P
Sbjct: 187 RASLHVVAVSDYP 199


>gi|50954663|ref|YP_061951.1| DNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951145|gb|AAT88846.1| DNA methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 190

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNV 259
            L +   ++G  +L+LY G+G   L  A      V+ VE +  +    + N AA      
Sbjct: 35  ALESRDAVRGARVLDLYAGSGALGLEAASRGSGAVVLVEKSAAAASVCKRNAAA------ 88

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
             V  S+    Q     R  + L  +   + RF  +F+DPP    D   + ++ A
Sbjct: 89  --VVRSAGPGEQPSVDVRTTSALAYLTTATGRFDLVFLDPPYDAPDAELLAVLTA 141


>gi|319787973|ref|YP_004147448.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466485|gb|ADV28217.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 279

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 64/191 (33%), Gaps = 40/191 (20%)

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
           Q D+A +       +D A  E    L     A +    L G          R +    L 
Sbjct: 34  QQDRAWLFAHGDDPVDPAKAEAYRALLGRRLAGEPVAYLTGH---------RGFWTLDLE 84

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLA--R 229
               TLI R                ++E  L          + +L  G G  +L +A  R
Sbjct: 85  TTPETLIPRPE-----------TELLVELALGRLPVDEPVRVADLGTGTGAIALAIASER 133

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V+A ++AK ++  A  N  AN V NV   R     + QA+ R+R            
Sbjct: 134 PLAAVVATDVAKATLAVAVRNAQANGVGNVWFRRGD---WCQALGRDR------------ 178

Query: 290 YRFKTIFVDPP 300
             F  +  +PP
Sbjct: 179 --FDLVASNPP 187


>gi|323342978|ref|ZP_08083209.1| hypothetical protein HMPREF0357_11390 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463042|gb|EFY08237.1| hypothetical protein HMPREF0357_11390 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 285

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 18/147 (12%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGI-NVHMLEWVLAATKGIQG----DLLELYCGNG 221
           + E   +  + L ++    SF   + GI     + W    +          +L L+   G
Sbjct: 61  LPESWIIQYKDLNFKVRPTSFK--HTGIFPEQAVNWDWMRSVIQTHTEPVRILNLFGYTG 118

Query: 222 NFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
             ++  A+ + + V+ ++  K  +   R NI  N + + K +R   ++  + + RE+   
Sbjct: 119 GATIACAKENVEEVVHIDALKGMIAWTRENIELNDLTDKK-IRTIVEDAMKFIEREKRRG 177

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           R          +  I +DPP  G    
Sbjct: 178 R---------TYHGIVMDPPSFGRGPK 195


>gi|302525418|ref|ZP_07277760.1| methyltransferase-UbiE family protein [Streptomyces sp. AA4]
 gi|302434313|gb|EFL06129.1| methyltransferase-UbiE family protein [Streptomyces sp. AA4]
          Length = 271

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +L++ CG G  ++ LAR      V+ +++++  +E AR +  +  V+NV+  R  
Sbjct: 41  VLDVGCGPGTITVDLARRVAPGEVVGIDVSETVLEQARAHARSEGVSNVRFERAD 95


>gi|121594803|ref|YP_986699.1| 3-demethylubiquinone-9 3-methyltransferase [Acidovorax sp. JS42]
 gi|222110598|ref|YP_002552862.1| 3-demethylubiquinone-9 3-methyltransferase [Acidovorax ebreus TPSY]
 gi|120606883|gb|ABM42623.1| 3-demethylubiquinone-9 3-methyltransferase [Acidovorax sp. JS42]
 gi|221730042|gb|ACM32862.1| ubiquinone biosynthesis O-methyltransferase [Acidovorax ebreus
           TPSY]
          Length = 237

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 15/164 (9%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L+W+   +      +L++ CG G  S  +AR    V  +++A  ++  AR + 
Sbjct: 33  HQINPLRLDWINQLSPLEGRKVLDVGCGGGILSDSMARKGAEVTGIDLASKALRVARLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                  V+   +S +E         +     ++  H    +++           A   +
Sbjct: 93  LEAETPRVQYREISVEELANECPGSFDTVTCMEMLEHVPDPQSVVA---------ACARL 143

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355
           V+    + + + N ++    L+I+   + ++        P   H
Sbjct: 144 VKPGGWVFFSTINRNAKAFALAIVGAEYLLK------MLPQGTH 181


>gi|54295178|ref|YP_127593.1| hypothetical protein lpl2258 [Legionella pneumophila str. Lens]
 gi|53755010|emb|CAH16498.1| hypothetical protein lpl2258 [Legionella pneumophila str. Lens]
          Length = 287

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
             H++E  L      +   +L+L  G+G  +L LA+     R+ A + +K ++E A YN 
Sbjct: 97  TEHLVELALELIPDKENVSVLDLGTGSGAIALALAKERPLWRIDACDFSKEALELACYNA 156

Query: 252 AANHVNNVKIVR 263
               +NN+    
Sbjct: 157 KTLGLNNINFCH 168


>gi|265994096|ref|ZP_06106653.1| LOW QUALITY PROTEIN: SAM dependent methyltransferase [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765077|gb|EEZ10998.1| LOW QUALITY PROTEIN: SAM dependent methyltransferase [Brucella
           melitensis bv. 3 str. Ether]
          Length = 215

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRM 264
            G    +L L+   G  SLV AR    V  V+ +K ++  AR N     +++  ++ +  
Sbjct: 37  NGSTVKVLNLFGYTGVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICE 96

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYIS 322
            + +F Q   R   F            +  I +DPP  G         + +  P ++  +
Sbjct: 97  DAMKFVQREERRGSF------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DT 143

Query: 323 CNPDSLCRDLSILSTTHTIE 342
           C      + L+++ T ++I 
Sbjct: 144 CRAILSAKPLAVILTAYSIR 163


>gi|157362916|ref|YP_001469683.1| putative methyltransferase [Thermotoga lettingae TMO]
 gi|157313520|gb|ABV32619.1| putative methyltransferase [Thermotoga lettingae TMO]
          Length = 173

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 21/127 (16%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           + V       Q   LEL+CG+   S+  L+R     +AV+I+  +++ A  N     V  
Sbjct: 30  QAVFNMIDVSQSSFLELFCGSAVMSIEALSRGAKHAVAVDISSKAIKTAIENAKKCGVE- 88

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS-GLDDATVGMVQAYP- 316
           +KIV+   ++F               I++ +  F  +F DPP + G     + ++   P 
Sbjct: 89  LKIVKSDFRKF---------------INLCNDNFDVVFADPPYNLGFVQKLLELLSIKPS 133

Query: 317 --HILYI 321
              I+ I
Sbjct: 134 LGQIIII 140


>gi|144899041|emb|CAM75905.1| Cyclopropane fatty acid synthase and related methyltransferases
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 403

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 8/148 (5%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVE 238
           +   E+S  Q            +          +L++ CG G  +L +AR  D  VL V 
Sbjct: 146 FHSPEDSLEQ---AQVAKKRHIIAKLDIKDGQSVLDIGCGWGGMALSIARAADVTVLGVT 202

Query: 239 IAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           ++K  +E AR       + + V+   +  ++      R       + +    YR    + 
Sbjct: 203 LSKEQLEVARRRAEQAGLADRVRFELLDYRKLKDKFDRIVSVGMFEHVGPPHYRQ---YF 259

Query: 298 DPPRSGLDDATVGMVQAYPHILYISCNP 325
              R  L +  V +V +     Y S NP
Sbjct: 260 RKVRDLLTEDGVALVHSVGEFDYGSSNP 287


>gi|18977374|ref|NP_578731.1| hypothetical protein PF1002 [Pyrococcus furiosus DSM 3638]
 gi|18893057|gb|AAL81126.1| hypothetical protein PF1002 [Pyrococcus furiosus DSM 3638]
          Length = 365

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARY 249
           A I   M+E      +   G +L+  CG+G   + LA  R+   ++ +E  +  +  A  
Sbjct: 204 ASIANAMIELA----ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEM 259

Query: 250 NIAANH-VNNVKIVRMSSKEFTQ 271
           N  A   ++ +K ++  + + +Q
Sbjct: 260 NALAAGVLDKIKFIQGDATQLSQ 282


>gi|325680106|ref|ZP_08159672.1| ribosomal protein L11 methyltransferase [Ruminococcus albus 8]
 gi|324108181|gb|EGC02431.1| ribosomal protein L11 methyltransferase [Ruminococcus albus 8]
          Length = 323

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 17/159 (10%)

Query: 169 ERLTVAGRTLIYRQIENSFT---QPNAGI-NVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           E ++      I      S     Q N     + ++E  L       G +L+L CG+G  S
Sbjct: 138 EEVSEGETRKILEIDPASSFGTGQHNTTQLCLELVEKYLKD----GGRVLDLGCGSGILS 193

Query: 225 L-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +  +       +AV+I   SV+ A  N   NH+   +  R             +E     
Sbjct: 194 IGAVLLGAGDCVAVDIDANSVKIAGENAEKNHIP-AEKYRAVCGNVIDDTELVKEIGGGY 252

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
           D+   +     +       G+     G ++    ++ +S
Sbjct: 253 DLLCANIVADVLI------GMSGLFAGFLKPGGRLI-VS 284


>gi|256785429|ref|ZP_05523860.1| methyltransferase [Streptomyces lividans TK24]
 gi|289769327|ref|ZP_06528705.1| methyltransferase [Streptomyces lividans TK24]
 gi|289699526|gb|EFD66955.1| methyltransferase [Streptomyces lividans TK24]
          Length = 208

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 76/223 (34%), Gaps = 51/223 (22%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           +T        R   ++        NV ++E V   T    GD L+L CG+G  +L LAR 
Sbjct: 7   VTFWDGVYAARPAPDA-----PRPNVRLVETV---TGLPPGDALDLGCGSGGDALWLARR 58

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             RV AV+I+  + E    +   + + ++             +R      R    D+ S 
Sbjct: 59  GWRVTAVDISGVAAERLAGHARTHGLGDL------VDAVRHDLRGSFPEGR---FDLVSA 109

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPHILYI---SCNPDSL--------------CRDLS 333
            +     D  R+ +       ++    +L +   S  P S                 DL+
Sbjct: 110 HYLHTPFDLDRASVLRGAAHALRPGGRLLVVDHGSTAPWSWDQDPDARHPAPQEVAADLA 169

Query: 334 ILSTTHTIERLALFDQFP---------YTRHMECG--VLLVRK 365
           +   T  +ER       P          T   E    VLLVR+
Sbjct: 170 LDPATWRVERAEA----PRRTATGPGGRTA--EVVDHVLLVRR 206


>gi|157364648|ref|YP_001471415.1| methyltransferase type 12 [Thermotoga lettingae TMO]
 gi|157315252|gb|ABV34351.1| Methyltransferase type 12 [Thermotoga lettingae TMO]
          Length = 242

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           ++DE         ++        Q         +E +++ T    G++L+L CG G  + 
Sbjct: 4   FIDESFWKDMYDWLF---PPERFQT----AKEQVEKIISITGIQSGNVLDLCCGPGRHTY 56

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            LA+    V AV+ ++  +  A+     +   NV  V  + K+F +
Sbjct: 57  ELAKLGFSVTAVDASEFLLNRAKE--LCSEFANVHFVHANMKDFVK 100


>gi|315126948|ref|YP_004068951.1| methyltransferase [Pseudoalteromonas sp. SM9913]
 gi|315015462|gb|ADT68800.1| methyltransferase [Pseudoalteromonas sp. SM9913]
          Length = 396

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 16/122 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
                       +L  +   G FSL  L      V  V++++P+++ A+ N+  N+++  
Sbjct: 212 RAALERFSKDKTVLNCFSYTGTFSLYALRGGCKHVTNVDVSQPALDTAKRNVEHNNLDLN 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYP 316
            V  V+    +  +  R +               F TI +DPP+   + A   G  + Y 
Sbjct: 272 KVDFVKQDVFKLLRQYRED------------GVMFDTIVMDPPKFADNKAQLTGACRGYK 319

Query: 317 HI 318
            I
Sbjct: 320 DI 321


>gi|296313419|ref|ZP_06863360.1| protein-(glutamine-N5) methyltransferase [Neisseria polysaccharea
           ATCC 43768]
 gi|296840050|gb|EFH23988.1| protein-(glutamine-N5) methyltransferase [Neisseria polysaccharea
           ATCC 43768]
          Length = 273

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAYGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|294893464|ref|XP_002774485.1| Protein FAM86A, putative [Perkinsus marinus ATCC 50983]
 gi|239879878|gb|EER06301.1| Protein FAM86A, putative [Perkinsus marinus ATCC 50983]
          Length = 340

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG--- 193
           R+ D +H   Y+      +       +R ++  R+  +  +L Y        Q   G   
Sbjct: 79  RITDEVHDLWYEFIAQNNSELNTPESERGFIAYRVGDSSISLGYDVSGRFIEQGTTGLSQ 138

Query: 194 --INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
                ++  W++A    ++G D+LEL  G+G   LV A      RV+  +     VEA R
Sbjct: 139 WEAGRYLASWLVANKCAVEGKDVLELGSGSGLVGLVAAGFSAARRVVLTDGNALVVEALR 198

Query: 249 YNIAANHVNNVKIVRM 264
            N+ +N ++NV++  +
Sbjct: 199 ANVKSNKLDNVEVAEL 214


>gi|205372078|ref|ZP_03224895.1| 16S rRNA m(2)G 1207 methyltransferase [Bacillus coahuilensis m4-4]
          Length = 200

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 20/102 (19%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             + G  L++ CG G   L LA+     +V  V++ + ++  A  N   N+V NV I R 
Sbjct: 56  PAVDGPFLDVGCGYGPIGLSLAKEDENRQVHMVDVNERALSLAEENAVLNNVQNVSIYRS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
            +                    +    F  I  +PP R+G  
Sbjct: 116 DTLH-----------------SVKEESFAAILTNPPIRAGKK 140


>gi|218440731|ref|YP_002379060.1| methyltransferase type 11 [Cyanothece sp. PCC 7424]
 gi|218173459|gb|ACK72192.1| Methyltransferase type 11 [Cyanothece sp. PCC 7424]
          Length = 440

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF- 269
           +L++ CG G  +L LA      +++ V+I++ SV+ AR  ++ +  N ++   MS ++  
Sbjct: 57  ILDVACGTGFTTLCLAEANPGAKIIGVDISEESVKLARERLSYHGFNEIEFYCMSLEDLP 116

Query: 270 -----TQAMRREREFNRLKDIDIHSYRFKTIF 296
                   +  E     L DI       KT+ 
Sbjct: 117 SLGLEFDYINAEEVLYILPDIVKGLVSMKTVL 148


>gi|189501489|ref|YP_001957206.1| HemK family modification methylase [Candidatus Amoebophilus
           asiaticus 5a2]
 gi|189496930|gb|ACE05477.1| modification methylase, HemK family [Candidatus Amoebophilus
           asiaticus 5a2]
          Length = 285

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 28/155 (18%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI------NVHMLEWVLAATKGIQGDLL 214
            + R +  E +        +  +  +F   N  +         +++ ++         +L
Sbjct: 63  IVQRIHQHEPIQYILGEAPF--MNRNFF-VNPSVLIPRPETEELVQLIIKENSKPGLHIL 119

Query: 215 ELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++  G+G  ++ LA+     +V  ++I++P+++ AR N                    QA
Sbjct: 120 DIGTGSGCIAITLAKDLSDAQVDGLDISEPALKVARSNAQR----------------LQA 163

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                + N L+D  +   ++  I  +PP   L + 
Sbjct: 164 NVNWIQANILQDP-LPGRKWDIIVSNPPYVCLSEK 197


>gi|170047169|ref|XP_001851106.1| methyltransferase [Culex quinquefasciatus]
 gi|167869669|gb|EDS33052.1| methyltransferase [Culex quinquefasciatus]
          Length = 215

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 16/122 (13%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARY 249
           + I  H L  +      ++   +L+L CG G  S+  A      V+ +EI   +++  + 
Sbjct: 33  SHIAAHALYTIETNYGDLENKLVLDLGCGPGMLSIGAALLGAQHVVGIEIDLDAIKVFQE 92

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N+    + NV  V+                + L DI     +F T+ ++PP     +  +
Sbjct: 93  NVQGFELENVDCVQWDV----------LNLDGLYDI----LKFDTVLMNPPFGTKQNNGI 138

Query: 310 GM 311
            M
Sbjct: 139 DM 140


>gi|170728585|ref|YP_001762611.1| hypothetical protein Swoo_4260 [Shewanella woodyi ATCC 51908]
 gi|169813932|gb|ACA88516.1| conserved hypothetical protein [Shewanella woodyi ATCC 51908]
          Length = 335

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
              +L L+          A     RV+ ++ +  ++EA R N   N V    + ++  + 
Sbjct: 147 NKTVLNLFSYTCGIGTAAAVGGAKRVINIDFSSFALEAGRKNAELNGVSEACQFIQSDAF 206

Query: 268 EFTQAMRREREFNRL-----KDIDIHSYRFKTIFVDPPRSGLDD 306
              + +   +   R          + + +F  +F+DPPR     
Sbjct: 207 PALRQLAGLKVGGRRNQKLPAYPKMTATQFDLVFLDPPRFAKSA 250


>gi|89901600|ref|YP_524071.1| 3-demethylubiquinone-9 3-methyltransferase [Rhodoferax
           ferrireducens T118]
 gi|109895912|sp|Q21UL3|UBIG_RHOFD RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|89346337|gb|ABD70540.1| 3-demethylubiquinone-9 3-methyltransferase [Rhodoferax
           ferrireducens T118]
          Length = 252

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 13/152 (8%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   LEW+          +L++ CG G  +  +AR   +V  +++A  ++  A+ + 
Sbjct: 45  HQINPLRLEWINHLCPVAGQQVLDVGCGGGILADSMARLGAQVTGIDLASKALRVAQLHA 104

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                 N++   +S +          +     ++  H     ++           A   +
Sbjct: 105 LEAQTPNLQYQEISVEALAAQQPGSFDVVTCMEMLEHVPDPASVV---------RACATL 155

Query: 312 VQAYPHILYISCN--PDSLCRDLSILSTTHTI 341
           V+    + + + N  P S    L+I+   + +
Sbjct: 156 VKPGGWVFFSTLNRSPKSFV--LAIVGAEYVL 185


>gi|258512138|ref|YP_003185572.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478864|gb|ACV59183.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 276

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 23/78 (29%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 + E ++A        +++L  G G  +        RV+ VE        A    
Sbjct: 24  PEAPETVRELLIAYLGKKPDTVVDLGSGTGLSTFPWRHDARRVIGVEPNDDMRAQAERRA 83

Query: 252 AANHVNNVKIVRMSSKEF 269
                +NV  +   S   
Sbjct: 84  MDLGADNVTFLPGVSTAI 101


>gi|42519266|ref|NP_965196.1| methyltransferase [Lactobacillus johnsonii NCC 533]
 gi|81832209|sp|Q74IX0|PRMA_LACJO RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|41583554|gb|AAS09162.1| probable methyltransferase [Lactobacillus johnsonii NCC 533]
          Length = 315

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              ++   +         +L++  G+G  ++  ++     VL  +I+  +V AA+ NIA 
Sbjct: 163 TTQLVLLAMERALVKPMSVLDVGTGSGILAIAASKLGASHVLGTDISDEAVTAAKENIAL 222

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           N+++N+ + + +  +           N L DI + 
Sbjct: 223 NNIDNIDVRKANLLKDIDEKYDLIVANILADILLE 257


>gi|56419127|ref|YP_146445.1| arsenite S-adenosylmethyltransferase [Geobacillus kaustophilus
           HTA426]
 gi|56378969|dbj|BAD74877.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 264

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 14/136 (10%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN 258
           +  A       +L+L CG G    + AR      RV+ V++    +  AR N A     N
Sbjct: 72  LAIAELNPGDVVLDLGCGAGFDCFLAARQVGETGRVIGVDMTPEMISKARNNAAKGGFTN 131

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI-----FVDPPRSGLDDATVGMVQ 313
            +      +    A            I++   + +        + P    +    V   +
Sbjct: 132 TEFRLGEIEYLPVADGSVDVIISNCVINLSPDKPQVFKEAYRVLKPGGRLVISDVVATAE 191

Query: 314 AYPHI------LYISC 323
               I      LY  C
Sbjct: 192 LPSEIKNNMDVLYSGC 207


>gi|331270640|ref|YP_004397132.1| methyltransferase small [Clostridium botulinum BKT015925]
 gi|329127190|gb|AEB77135.1| methyltransferase small [Clostridium botulinum BKT015925]
          Length = 242

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 31/148 (20%)

Query: 212 DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            +++L  G G    ++A       +  +EI +  VE A  +I  N +   ++ +      
Sbjct: 44  RVVDLCSGTGIVPFIIAGKTKASSITGIEIQEDMVEMANRSIKFNELQEKIEFICEDLTN 103

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS----GLDDATVGMVQAYPHILYISCN 324
                          D+     +   + V+PP      G+ + +  M  A      + CN
Sbjct: 104 I--------------DVMKKVPKADVVTVNPPYKLYNSGIVNPSDKMAIARHE---VCCN 146

Query: 325 PD-------SLCRDLSILSTTHTIERLA 345
            +       +L +D   +   H  +RLA
Sbjct: 147 LEDVIIACRTLLKDNKRMYMVHRPDRLA 174


>gi|212636629|ref|YP_002313154.1| Modification methylase HemK [Shewanella piezotolerans WP3]
 gi|212558113|gb|ACJ30567.1| Modification methylase HemK [Shewanella piezotolerans WP3]
          Length = 280

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 81/253 (32%), Gaps = 36/253 (14%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI- 160
           ++L  I        + ++  I ++     +      L D+    +++  L  R     I 
Sbjct: 14  SQLETISDSAMLDAEVMLLHIINKPRSYLYTWPERDL-DSAQVSEFKQMLAKRLRGNPIA 72

Query: 161 --CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
               +R++      V   TLI R                ++E  L         +L+L  
Sbjct: 73  HIVGEREFWSLPFRVNPTTLIPRPD-----------TEILVETALNLPLAENARVLDLGT 121

Query: 219 GNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR---MSSKEFTQAM 273
           G G  +L LA  R+  +V A++  + +V  A  N     + +V + +     + E     
Sbjct: 122 GTGAIALSLAHERNEWQVCAIDKVEEAVALAIENRVNLKLEHVDVFQSDWFDAVECYDFN 181

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD-- 331
                   + + D H  +         R     A    ++ +  + +I     +  RD  
Sbjct: 182 LIVSNPPYIDEEDEHLSQGDV------RFEPQSALTAPLKGFADLFHI----ANCARDYL 231

Query: 332 ----LSILSTTHT 340
                 +L   + 
Sbjct: 232 APGGYLLLEHGYQ 244


>gi|150403381|ref|YP_001330675.1| type 11 methyltransferase [Methanococcus maripaludis C7]
 gi|150034411|gb|ABR66524.1| Methyltransferase type 11 [Methanococcus maripaludis C7]
          Length = 285

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 15/159 (9%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           ++ H  L   + +    L          + ++    K        +    L       IY
Sbjct: 47  MVIHDPLKTKFNKNREELNRRF-CNNIGVSVVSYIRKE----GDMHYVRGLMAENGANIY 101

Query: 181 RQIE-NSFTQPN------AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR--H 230
             +   SF Q N        +    +E   +    + G ++L++ CG G+ ++ +A+   
Sbjct: 102 GILPYTSFDQINEAKFPQTSMEPRKMEAFSSILPSLNGKNILDVGCGIGSLAINMAKVKP 161

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +  ++I   S+E  + N     V N      S+ E 
Sbjct: 162 ESTIYGIDIIDGSIEQCKLNARIEGVTNTNFAVASAYEL 200


>gi|28868325|ref|NP_790944.1| hemK protein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28851562|gb|AAO54639.1| hemK protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 277

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L          +L+L  G G  +L LA  R   +V AV+    +V  A  N 
Sbjct: 94  TEMLVEAALELVPAFAPAQVLDLGTGTGAIALALANDRQQWKVTAVDRVPEAVALAERNR 153

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               ++  ++                  N      +   +F  I  +PP
Sbjct: 154 QRLQLDYAQV-----------------LNSHWFSALEGRQFDLIISNPP 185


>gi|145342148|ref|XP_001416155.1| protein methyltransferase [Ostreococcus lucimarinus CCE9901]
 gi|144576380|gb|ABO94448.1| protein methyltransferase [Ostreococcus lucimarinus CCE9901]
          Length = 398

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/380 (15%), Positives = 122/380 (32%), Gaps = 83/380 (21%)

Query: 24  MMLAFQVPNLQIFRSEPIHYRMR----AEFHIWHDGDDLYHIMFDQQTKERM---RIDYF 76
           ++  F V  + + R      R +    A      D  D+   + D+  K  +   ++D  
Sbjct: 5   LLEPFLVGRIAVKRGLAKTKRAKHMKGAHASALCDASDIPIRLVDRPGKYPVNSSQLDDV 64

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLL----DDAWR 132
                 + A  I         P+L+    ++++L + S    V       +    DD + 
Sbjct: 65  RKWGQDVAARNIAYFEASNGSPMLKELYQELEWLITDSTAERVECSPRLKVATSGDDGFS 124

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
             +      L     ++Q +              + +R+ +   T      +  FT  N 
Sbjct: 125 ASSTTRSAILRQSIPELQQLWMRR----------IIDRVPLQYLTNTAHWRDMEFT-VNT 173

Query: 193 GI------NVHMLEWVLAATKGIQGDL--------------LELYCGNGNFSLVLARH-- 230
            +         ++++     + ++ +               L+L  G+G  ++ LA+   
Sbjct: 174 SVLIPRPETELLIDFACEWLRELESNTENHTMNYNLLSGPWLDLGTGSGILAIALAKELQ 233

Query: 231 -----FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKD 284
                   V AV+++  ++E AR N   N V + +K +  S             FN +K 
Sbjct: 234 RKCADASSVYAVDVSVAALELARDNARRNGVQDSIKTLHGS------------WFNPIKK 281

Query: 285 IDIHSYRFKTIFVDPPR------SGLDDATVG---MVQAYPHILYISCNPDSLCRDLS-- 333
                 RF  I  +PP         L          +         S +  ++CRD+   
Sbjct: 282 ----DVRFTGILTNPPYIPTDLLESLQPEVCSHEPWLALDGGGGDGSAHLVTICRDVKNF 337

Query: 334 ILSTT------HTIERLALF 347
           +L         H +E+  L 
Sbjct: 338 LLPGGLFAVETHGLEQARLV 357


>gi|134098244|ref|YP_001103905.1| methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|291004335|ref|ZP_06562308.1| methyltransferase [Saccharopolyspora erythraea NRRL 2338]
 gi|133910867|emb|CAM00980.1| methyltransferase [Saccharopolyspora erythraea NRRL 2338]
          Length = 245

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 3/124 (2%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +     ++E +L    G    +L+L CG+G  +  LA     V  ++I    ++ AR + 
Sbjct: 28  SDAAAGLVERLLELRPGE--RVLDLACGHGRIANRLAARGLEVSGLDITPVFLDRARQDA 85

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               V  V  VR   +E       +   N                +D  R  L      +
Sbjct: 86  HERGVE-VDYVRGDMRELPWTGHFDAIVNWFTAFGYFDDAGNRRVLDQARQALRPGGRLL 144

Query: 312 VQAY 315
           ++  
Sbjct: 145 LELN 148


>gi|115371881|ref|ZP_01459194.1| hypothetical protein STIAU_8393 [Stigmatella aurantiaca DW4/3-1]
 gi|115371116|gb|EAU70038.1| hypothetical protein STIAU_8393 [Stigmatella aurantiaca DW4/3-1]
          Length = 262

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L++ CG+G+ S++LA    RV  ++I+  S+E A        V +  +   S  E  
Sbjct: 33  HVLDVGCGDGSNSILLASRGARVTGIDISPRSIELATERAKLAGVQDRVVFHCSPLELA 91


>gi|125974913|ref|YP_001038823.1| HemK family modification methylase [Clostridium thermocellum ATCC
           27405]
 gi|256003830|ref|ZP_05428817.1| modification methylase, HemK family [Clostridium thermocellum DSM
           2360]
 gi|281418621|ref|ZP_06249640.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium thermocellum JW20]
 gi|125715138|gb|ABN53630.1| modification methylase, HemK family [Clostridium thermocellum ATCC
           27405]
 gi|255992168|gb|EEU02263.1| modification methylase, HemK family [Clostridium thermocellum DSM
           2360]
 gi|281407705|gb|EFB37964.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium thermocellum JW20]
 gi|316939124|gb|ADU73158.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium thermocellum DSM 1313]
          Length = 302

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 19/151 (12%)

Query: 166 YVDERLTVAGRTLIYRQIENSF----TQPNAGI------NVHMLEWVLAATKGI---QGD 212
           +++ER+   G+ L Y      F          +         ++E VL   K        
Sbjct: 60  FLEERI--KGKPLQYITGHQEFMSLDFIVTPDVLIPRQDTETLVEAVLTHVKSTGLENAR 117

Query: 213 LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIV-RMSSKEF 269
           +L++  G+G  ++ LA      RVLA++I++ ++E A  N     V +     +  + E 
Sbjct: 118 ILDIGTGSGCIAVSLAHFLKDSRVLALDISEKALEIAETNAKRCGVWDRMFFLKGDALEG 177

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              +  +  F +  +     + F  I  +PP
Sbjct: 178 LAGIIAQSPFAKDFERKGEGF-FDIIVSNPP 207


>gi|257459405|ref|ZP_05624514.1| methyltransferase domain protein [Campylobacter gracilis RM3268]
 gi|257442830|gb|EEV17964.1| methyltransferase domain protein [Campylobacter gracilis RM3268]
          Length = 269

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 30/73 (41%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +  E++          LL+  CG G  S+  A   +R+   + +   +E A+ N     
Sbjct: 48  AYAREFIDKVDFSDASTLLDFACGAGALSIAAADKLERIYGFDFSPKMLEFAKKNAQTYG 107

Query: 256 VNNVKIVRMSSKE 268
             N+K  + + ++
Sbjct: 108 AKNIKFAQKAFED 120


>gi|239630123|ref|ZP_04673154.1| 16S RNA methylase RsmC [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301067273|ref|YP_003789296.1| 16S RNA G1207 methylase RsmC [Lactobacillus casei str. Zhang]
 gi|239527735|gb|EEQ66736.1| 16S RNA methylase RsmC [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300439680|gb|ADK19446.1| 16S RNA G1207 methylase RsmC [Lactobacillus casei str. Zhang]
          Length = 198

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 21/121 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
             ++  +LA      G +L++  G G   L LA+HF   +V   ++ + ++  A+ N   
Sbjct: 46  RVLIATILAEELP-TGPILDVGTGYGPIGLALAKHFPDRQVTMSDVNERALALAQRNATD 104

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++NV IV  S                    D    +F  I  +PP         G++ 
Sbjct: 105 NAISNVTIVESSM------------------YDQIDGQFGVIVTNPPIRAGKTIVSGILA 146

Query: 314 A 314
            
Sbjct: 147 G 147


>gi|114565187|ref|YP_752701.1| PUA domain-containing protein [Shewanella frigidimarina NCIMB 400]
 gi|122298246|sp|Q07VV2|RLMI_SHEFN RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|114336480|gb|ABI73862.1| SAM-dependent methyltransferase [Shewanella frigidimarina NCIMB
           400]
          Length = 397

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +AA       +L  +C  G F L  A+     +  V+++  +++ AR N+A N++ N 
Sbjct: 213 RAMAARFVKGKSVLNCFCYTGTFGLYAAKAGAASIENVDVSTLALQTARDNMAINNL-ND 271

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             V  +  +  + +R+ R+             F  I +DPP+   + + + 
Sbjct: 272 DHVNYNEADVFKLLRQYRD---------EGKTFDVIVLDPPKFADNKSQLD 313


>gi|158318198|ref|YP_001510706.1| methyltransferase type 11 [Frankia sp. EAN1pec]
 gi|158113603|gb|ABW15800.1| Methyltransferase type 11 [Frankia sp. EAN1pec]
          Length = 283

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 185 NSFTQPNA-----GINVHMLEWVLAATKGIQGDLLELYCGNG--NFSLVLARHFDRVLAV 237
            +F   NA     G+  +   ++ A        +L++ CG G              VL V
Sbjct: 23  GAFWVANADRFDEGVAAYRDRFLAATAIDETAAVLDVGCGGGRTTLDAACRAAAGSVLGV 82

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +++   +E AR      HV N    +  +
Sbjct: 83  DLSSEMLELARRRAEREHVTNATFEQADA 111


>gi|302908517|ref|XP_003049887.1| hypothetical protein NECHADRAFT_30345 [Nectria haematococca mpVI
           77-13-4]
 gi|256730823|gb|EEU44174.1| hypothetical protein NECHADRAFT_30345 [Nectria haematococca mpVI
           77-13-4]
          Length = 382

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            G +   ++LY G G F    AR   RVL  EI   SVE  R    AN  + V+IV+  
Sbjct: 193 NGDEKWAVDLYAGIGYFVFSYARLGMRVLCWEINPWSVEGLRRGARANGWS-VRIVQGD 250


>gi|154685070|ref|YP_001420231.1| hypothetical protein RBAM_006080 [Bacillus amyloliquefaciens FZB42]
 gi|154350921|gb|ABS73000.1| hypothetical protein RBAM_006080 [Bacillus amyloliquefaciens FZB42]
          Length = 260

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +   V A+      D+L++  G G+ +  LA     V+A ++ +  + AA   I
Sbjct: 26  HAAGEDLAYLVSASGAEKHMDVLDIATGGGHTANALAPLVRSVIAYDLTEEMLAAAEAFI 85

Query: 252 AANHVNNVKIVRMSSKE 268
             N   NV   +  +++
Sbjct: 86  TGNGWTNVSFEKGDAEK 102


>gi|108804487|ref|YP_644424.1| HemK family modification methylase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765730|gb|ABG04612.1| modification methylase, HemK family [Rubrobacter xylanophilus DSM
           9941]
          Length = 280

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 64/173 (36%), Gaps = 17/173 (9%)

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
           + +   +  L+  R  +   RE  +   DA    ++  + + R    +I     + + +L
Sbjct: 22  ASAQVLMSELLGVRRGEVLLREEPLSPEDAARYERWISRRLKREPVQRILGYAYFRNLKL 81

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--R 229
            +   TLI R                ++E  L         +L++  G+G  ++ +A  R
Sbjct: 82  YLNEDTLIPRPD-----------TESVVEAALERIDARPLRVLDIGTGSGAIAIAIAQER 130

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
               V A +I++ ++E AR N   N       VR    +    +R     + L
Sbjct: 131 PGCEVHATDISRRALEIARRNADLNGAR----VRFHLADLVSGLRLPGGVDLL 179


>gi|332885055|gb|EGK05307.1| hypothetical protein HMPREF9456_02806 [Dysgonomonas mossii DSM
           22836]
          Length = 272

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 212 DLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G GN    +AR       +V+ ++ +   +E AR N       NV+ +    +
Sbjct: 80  TVLDLGSGAGN-DCFIARSEVGETGKVIGIDFSPQMIEKARKNATKRGYTNVEFIEGDIE 138


>gi|297153463|gb|ADI03175.1| methyltransferase type 12 [Streptomyces bingchenggensis BCW-1]
          Length = 208

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N   N  + E V   T    GD L+L CG+G  +L LA    +V A +I+  +VE     
Sbjct: 22  NPQPNARLTETV---TGLPAGDALDLGCGDGGDALWLAGQGWQVTAADISAVAVERLAAL 78

Query: 251 IAANHV-NNVKIVRMS 265
             A+ + + V  VR  
Sbjct: 79  ARAHGLGDRVTAVRHD 94


>gi|209527308|ref|ZP_03275817.1| Methyltransferase type 11 [Arthrospira maxima CS-328]
 gi|209492234|gb|EDZ92580.1| Methyltransferase type 11 [Arthrospira maxima CS-328]
          Length = 442

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 213 LLELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+  CG+G    +L LA    +++ ++I++ SVEA+R  +  + + N +   M  +E 
Sbjct: 62  ILDAGCGSGYKALALALANPGAKIVGIDISEKSVEASRDRLKYHGIENAEFHAMYIEEL 120


>gi|149912253|ref|ZP_01900829.1| putative SAM-dependent methyltransferase [Moritella sp. PE36]
 gi|149804674|gb|EDM64728.1| putative SAM-dependent methyltransferase [Moritella sp. PE36]
          Length = 396

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NV 259
            AA      D+L  +   G F +  L      +  V++++ +++ A+ N+  N ++    
Sbjct: 214 AAAKYAKGKDVLNCFSYTGGFGVYALQAGAKSITNVDLSQSALDIAKRNMEHNGLDLSKA 273

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
           +  R    +  +  R E               F TI +DPP+   + A   G  + Y  I
Sbjct: 274 EFERADVFKLLRKYREE------------GRAFDTIILDPPKFAENKAQMKGACRGYKDI 321

Query: 319 LYI 321
            ++
Sbjct: 322 NFV 324


>gi|149003881|ref|ZP_01828704.1| HemK protein [Streptococcus pneumoniae SP14-BS69]
 gi|237650078|ref|ZP_04524330.1| HemK protein [Streptococcus pneumoniae CCRI 1974]
 gi|237822153|ref|ZP_04597998.1| HemK protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758111|gb|EDK65115.1| HemK protein [Streptococcus pneumoniae SP14-BS69]
          Length = 279

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 32/153 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+    L V  R LI R                ++E +L      
Sbjct: 62  QLATHKPAQYIIGQADFYGMHLKVDERVLIPRPE-----------TEELVELILTENLET 110

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A +I++ +++ AR N       N++I    S 
Sbjct: 111 NLSVLDIGTGSGAIALALAKNRPAWSVTAADISQEALDLARENAKN---QNLQIFLKKSD 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            FT+                 S ++  I  +PP
Sbjct: 168 CFTE----------------ISEKYDIIVSNPP 184


>gi|126730063|ref|ZP_01745875.1| 3-demethylubiquinone-9 3-methyltransferase [Sagittula stellata
           E-37]
 gi|126709443|gb|EBA08497.1| 3-demethylubiquinone-9 3-methyltransferase [Sagittula stellata
           E-37]
          Length = 250

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 11/133 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG G     +AR    V+ V+ A  ++  A  + A + +  +     ++++   
Sbjct: 67  RILDIGCGGGLLCEPMARLGAEVVGVDAAARNIPVAEAHAAQSGLA-IDYRHTTAEDLAA 125

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
           A   ER    L    +       +++   R  L    + +            NP S    
Sbjct: 126 A--GERFDVVLNMEVVEHVADPLVYLTACRQLLKPGGLHLCSTINR------NPKSFA-- 175

Query: 332 LSILSTTHTIERL 344
           ++I+   + +  L
Sbjct: 176 MAIVGAEYVMRWL 188


>gi|308801018|ref|XP_003075290.1| MPBQ/MSBQ transferase cyanobacterial type (ISS) [Ostreococcus
           tauri]
 gi|116061844|emb|CAL52562.1| MPBQ/MSBQ transferase cyanobacterial type (ISS) [Ostreococcus
           tauri]
          Length = 360

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 16/126 (12%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAA 253
            M +W  A        +L++ CG G  S  LAR F     V  + ++   V+ A    + 
Sbjct: 120 QMADWSEAR---APARVLDVGCGIGGTSRHLARRFGVGTEVTGITLSPNQVKRATELASE 176

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             V N     M++ E    M  E +   L                P +    +  V +++
Sbjct: 177 QGVTNANFQVMNALE----MTFEDDTFDLVWACESGEH------MPDKKKYVEEMVRVLK 226

Query: 314 AYPHIL 319
               I+
Sbjct: 227 PGGKIV 232


>gi|329667224|gb|AEB93172.1| putative methyltransferase [Lactobacillus johnsonii DPC 6026]
          Length = 294

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              ++   +         +L++  G+G  ++  ++     VL  +I+  +V AA+ NIA 
Sbjct: 142 TTQLVLLAMERALVKPMSVLDVGTGSGILAIAASKLGASHVLGTDISDEAVTAAKENIAL 201

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           N+++N+ + + +  +           N L DI + 
Sbjct: 202 NNIDNIDVRKANLLKDIDEKYDLIVANILADILLE 236


>gi|222085772|ref|YP_002544302.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium
           radiobacter K84]
 gi|221723220|gb|ACM26376.1| protein-L-isoaspartate O-methyltransferase [Agrobacterium
           radiobacter K84]
          Length = 223

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 16/112 (14%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  +L++ CG G  S +L+    +V+A+E  +     A+ N+AA   +NV +V    ++ 
Sbjct: 85  EDKVLDVGCGTGYVSALLSILAGKVVALESDEALAATAKTNLAALGHDNVTVVTGELEKG 144

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
             A                S  +  IFVD     +  A +  +     ++ +
Sbjct: 145 YAA----------------SGAYDVIFVDGSVQEVPQALLDQLGEGGRLIVV 180


>gi|28209992|ref|NP_780936.1| methyltransferase [Clostridium tetani E88]
 gi|28202427|gb|AAO34873.1| methyltransferase [Clostridium tetani E88]
          Length = 258

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 17/108 (15%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKI 261
           A      ++L+L  G G    +++  R F+++L +EI +  V+ A+     N +   VK 
Sbjct: 50  ANIKRNDNILDLCSGTGIVPFIISGKRKFNKILGIEIQEDMVDMAKRTAMYNELEEKVKF 109

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           +    K+ T+ ++   EF               + V+PP    D   +
Sbjct: 110 ILGDLKD-TKLLKNLGEF-------------DVVTVNPPYKLKDSGII 143


>gi|313225719|emb|CBY07193.1| unnamed protein product [Oikopleura dioica]
          Length = 316

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 58/160 (36%), Gaps = 16/160 (10%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR-LRDALHARKYQIQLIGRANKTK----- 159
            I  ++  ++   +  +  +     +++   R L D +   K  I       +++     
Sbjct: 131 NISRISGFANIGHIIQVNLKKPHFEYKKLIGRVLLDKVPTVKTVIAKNDSLTESEENKFR 190

Query: 160 -----ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
                +   +D +       G T      E ++   N+ +       +++         +
Sbjct: 191 ILPFEVIAGKDSLQTTHKEHGNTFHLDMGE-TYW--NSRLQEE--HKIMSELIDENSVCV 245

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           +L CG G F++ +A+   R +A ++   S++  R N   N
Sbjct: 246 DLCCGIGPFAIPIAKRGIRTIANDLNPDSIKWLRINAEIN 285


>gi|255074075|ref|XP_002500712.1| predicted protein [Micromonas sp. RCC299]
 gi|226515975|gb|ACO61970.1| predicted protein [Micromonas sp. RCC299]
          Length = 455

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 26/138 (18%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVK 260
           + A    +  +L++ C  G F++  A      V  V+ +  +++ AR N   N V     
Sbjct: 270 VRALGAGKKRVLDVCCYTGGFAINAALGGAADVTGVDSSPLALDIARRNADVNGVGARTT 329

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------------LD 305
            V+  + ++   +  +           +   F  I +DPP+                 ++
Sbjct: 330 FVQSEAFKYLDDLVAD---------SGNLGTFDMIVLDPPKLAPSVNALAGATRKYVKMN 380

Query: 306 DATVGMVQAYPHILYISC 323
            A + +++    ++  SC
Sbjct: 381 QAAMRLLRPGGILVTCSC 398


>gi|254423241|ref|ZP_05036959.1| magnesium protoporphyrin O-methyltransferase [Synechococcus sp. PCC
           7335]
 gi|196190730|gb|EDX85694.1| magnesium protoporphyrin O-methyltransferase [Synechococcus sp. PCC
           7335]
          Length = 237

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 22/157 (14%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           ++LEW        Q  + +  CG G+ S+ LA+   +V A +I++  VE A+        
Sbjct: 50  NVLEWFAEDEHLSQITVCDAGCGVGSLSIPLAKMGAKVFASDISEKMVEEAK-------- 101

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
             V+       E T     E E   L+ I    H+     + +  P+   D     +   
Sbjct: 102 --VRSQAALGDELTPERMPEFETKDLEAITGTYHTVVCLDVLIHYPQEKADSMIEHLSSL 159

Query: 315 YPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
               + IS  P +            T++++   D FP
Sbjct: 160 ASDRILISFAPKT--------CFYATLKKVG--DFFP 186


>gi|168187956|ref|ZP_02622591.1| SAM-dependent methyltransferase [Clostridium botulinum C str.
           Eklund]
 gi|169294218|gb|EDS76351.1| SAM-dependent methyltransferase [Clostridium botulinum C str.
           Eklund]
          Length = 247

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 31/148 (20%)

Query: 212 DLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
           ++++L  G G    ++A       +  +EI +  VE A  ++  N +   V  +    K 
Sbjct: 49  NVIDLCSGTGIVPFIIAGKTEASNIKGIEIQEEMVEMADRSVKFNKLEEKVSFLCGDLKN 108

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPHILYISCN 324
                          D+     +   + V+PP    +   V     M  A      + CN
Sbjct: 109 I--------------DVLKKLPKADVVTVNPPYKLANSGIVNPSDKMAIARHE---VCCN 151

Query: 325 PD-------SLCRDLSILSTTHTIERLA 345
            +       +L +D   +   H  +RLA
Sbjct: 152 LEDVIIACRTLLKDNKRMYMVHRPDRLA 179


>gi|194367807|ref|YP_002030417.1| PUA domain-containing protein [Stenotrophomonas maltophilia R551-3]
 gi|194350611|gb|ACF53734.1| PUA domain containing protein [Stenotrophomonas maltophilia R551-3]
          Length = 389

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 27/192 (14%)

Query: 132 RECAIRLRDALHA-RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE-----N 185
                 LR+     R +         +       +   E   +    + +R         
Sbjct: 138 EWIYEALREQFPGCRFHSFADEHVQKQESFDFHGNTTTEASVITEYGIKFRADPAGAHKT 197

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSV 244
            F            EW+    +G    +L+L C  G F++   AR    V+ ++I +  +
Sbjct: 198 GFF----ADQRENREWLSQQVEGKS--VLDLCCNTGGFAVYAAARGASDVVGIDIDEDVI 251

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A+ N   N+V   K ++               F  L+D      ++  + +DP +   
Sbjct: 252 QIAKGNSRLNNVR-PKFIQSD------------IFPWLRDAANRGEQYDVVILDPAKMTR 298

Query: 305 D-DATVGMVQAY 315
           D D  +  ++ Y
Sbjct: 299 DRDQVITALKKY 310


>gi|326566695|gb|EGE16834.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           103P14B1]
          Length = 310

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W LAA +     +++  CG+G   +  L     +VLAV+I   +V A R N A N V+
Sbjct: 153 LDW-LAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVD 211

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +              +  E +  R ++  +       I    P  G       +++    
Sbjct: 212 DR---------LLAFLPTEFDAYRTQNPQLADVITANILA-KPLIGFAPLFHDLLKTGGL 261

Query: 318 IL 319
           I+
Sbjct: 262 IV 263


>gi|306818494|ref|ZP_07452217.1| possible 16S rRNA methyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|307700681|ref|ZP_07637706.1| methyltransferase small domain protein [Mobiluncus mulieris
           FB024-16]
 gi|304648667|gb|EFM45969.1| possible 16S rRNA methyltransferase [Mobiluncus mulieris ATCC
           35239]
 gi|307613676|gb|EFN92920.1| methyltransferase small domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 268

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 39/175 (22%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              +L  V    +G  G  +++ CG G  SLV+AR     RV+AV++   +++    N  
Sbjct: 111 TAVLLRKVPKLPEG--GVFVDVGCGWGPLSLVMARQRPAARVVAVDVNARALDLTAKNAR 168

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N + N                 E          +       I+ +PP     DA   M 
Sbjct: 169 ENGLGN----------------LEVLAEAAALAQLADGSVDVIWSNPPVRIGKDALHAMW 212

Query: 313 QAYPH------ILYI-------SCNPDSLCRD----LSIL--STTHTIERLALFD 348
            A+        + Y+       +    +  RD       L  S    + +L   D
Sbjct: 213 TAWRVKLRPGGVAYLVMGRNLGADTFAAWARDSGWETERLASSKGFRVLQLRPMD 267


>gi|302343593|ref|YP_003808122.1| methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
 gi|301640206|gb|ADK85528.1| Methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
          Length = 244

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-V 259
           +LAA       +L+L CG+G +SL LA      VL V+ A  +VE+A    A   +    
Sbjct: 43  ILAALPMAGKSVLDLGCGDGTYSLELAAAGAASVLGVDAAPAAVESATQRAAERGLQGLA 102

Query: 260 KIVRMSSKEF 269
                   + 
Sbjct: 103 SFQYGDINDL 112


>gi|289193008|ref|YP_003458949.1| ribosomal L11 methyltransferase [Methanocaldococcus sp. FS406-22]
 gi|288939458|gb|ADC70213.1| ribosomal L11 methyltransferase [Methanocaldococcus sp. FS406-22]
          Length = 209

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 17/115 (14%)

Query: 213 LLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +++L CG G   L +        R + ++I + S+EAA+ N    +V+ V    M  ++ 
Sbjct: 50  VIDLGCGTG--RLAIGSKLLGAKRAIGIDIDRESIEAAKENAKKLNVD-VDFYCMDVRDV 106

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGMVQAYPHILY 320
                 +      +D D+     + +  +PP    +   D   +        ++Y
Sbjct: 107 DDEFLNKVL---GEDRDLK----RVVIQNPPFGAQKKHADRLFLDKALEIGDVIY 154


>gi|219565266|dbj|BAH04163.1| putative SAM-dependent methyltransferase [Streptomyces
           triostinicus]
          Length = 232

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L     I G +L+  CG G   L LA     V  ++++  +V  AR       ++    
Sbjct: 45  ALEEAGLISGAVLDAGCGTGEDILHLAGKGYAVTGLDLSSEAVAIARRKAEERGLD-ATF 103

Query: 262 VRMSSKEFT 270
              ++ E  
Sbjct: 104 AVANALELA 112


>gi|237839183|ref|XP_002368889.1| hypothetical protein TGME49_034490 [Toxoplasma gondii ME49]
 gi|211966553|gb|EEB01749.1| hypothetical protein TGME49_034490 [Toxoplasma gondii ME49]
          Length = 754

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 120 TLIYHRLLDDA-WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           T +  R L+ + W+  A RL+      +  I    R ++ +I      +   +      +
Sbjct: 396 THVDGRRLEPSVWKHLAKRLKAETIGVQAPISGPKRQSQVQIIYGASGL---VNHQENGV 452

Query: 179 IYRQIENS--FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL-----ARHF 231
           +Y        F   N       +  + A+       +++L+CG G FSL       A   
Sbjct: 453 VYHFDVTKCMFASGNGTERARFVNLIRASNSAEPETVVDLFCGIGYFSLAALTCAGADKL 512

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVN 257
             + A +  + +++     +A NHV+
Sbjct: 513 KHLYACDWNQDALQFFEAALALNHVD 538


>gi|163848848|ref|YP_001636892.1| type 11 methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222526803|ref|YP_002571274.1| type 11 methyltransferase [Chloroflexus sp. Y-400-fl]
 gi|163670137|gb|ABY36503.1| Methyltransferase type 11 [Chloroflexus aurantiacus J-10-fl]
 gi|222450682|gb|ACM54948.1| Methyltransferase type 11 [Chloroflexus sp. Y-400-fl]
          Length = 199

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
           E +  + +      ++L CG G   + LAR   +V  V+    ++  A+  +AA  V + 
Sbjct: 27  EIIALSQELPPSRAIDLGCGTGRACVWLARAGWQVDGVDFVPEAIAMAQERVAAAGVGDR 86

Query: 259 VKIVRMSSKEFT 270
           V++    +    
Sbjct: 87  VRLFVADATNLA 98


>gi|325273728|ref|ZP_08139928.1| SAM-dependent methyltransferase [Pseudomonas sp. TJI-51]
 gi|324101148|gb|EGB98794.1| SAM-dependent methyltransferase [Pseudomonas sp. TJI-51]
          Length = 398

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
               A       +L+L+   G + +   A     V  V+ +  +++    N A N +   
Sbjct: 212 RARLAPYVKGKRVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGIGEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +     E  + ++   E            RF  I  DPP                  
Sbjct: 272 LTCIEGDVFEALRELKAAEE------------RFDVIIADPPAFIKRKKDLKNGEAAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + M+     ++  SC
Sbjct: 320 LNEQAMRMLSKDGILVSASC 339


>gi|312622682|ref|YP_004024295.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203149|gb|ADQ46476.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 288

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 23/134 (17%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIA 252
              ++E  +   KG +    L++  G+G  ++ L +  D +V AV+I++ ++E AR N  
Sbjct: 105 TEVLVEVAIEIFKGRKNLYFLDIGTGSGCIAVALCKFLDCKVFAVDISERALEVARKNAK 164

Query: 253 ANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            N V N +  VR +  E                    + RF  I  +PP    D+    +
Sbjct: 165 LNGVENRISFVRSNLFEDIP----------------KNLRFDAIISNPPY-ISDEEIFEL 207

Query: 312 ---VQAYPHILYIS 322
              V   PHI   S
Sbjct: 208 DPRVLKEPHIALFS 221


>gi|291454909|ref|ZP_06594299.1| methyltransferase type 12 [Streptomyces albus J1074]
 gi|291357858|gb|EFE84760.1| methyltransferase type 12 [Streptomyces albus J1074]
          Length = 236

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
           R+        YR  +  F+      N  ++  V        G  L+L CG G  +  LAR
Sbjct: 36  RMDAQYWDEKYRSTDQLFS---GAPNAVLVAEVAEL---PPGHALDLGCGEGADAHWLAR 89

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           H  RV AV+IA  ++  A              V  ++ + T+     R ++
Sbjct: 90  HGWRVTAVDIAPTALRRAAEAAPEL----ADQVTWTAADITRTPPAPRTYD 136


>gi|255713840|ref|XP_002553202.1| KLTH0D11330p [Lachancea thermotolerans]
 gi|238934582|emb|CAR22764.1| KLTH0D11330p [Lachancea thermotolerans]
          Length = 302

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 11/116 (9%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                      +   + +       +L++YCG G  ++ LA++F +V  V+ +   +  A
Sbjct: 76  FSVTPESVAKFVARFIKSCLPEAKVVLDVYCGGGGNTIQLAQYFPKVYGVDNSLDHLYCA 135

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
             N  A  V +   V +   ++ + + R+R F ++            +F  PP  G
Sbjct: 136 YRNAQAYGVED--RVWLKFGDW-RVLSRKRRFEKVA--------VDCVFSSPPWGG 180


>gi|162146406|ref|YP_001600865.1| ubiquinone/menaquinone biosynthesis methyltransferase ubi
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161784981|emb|CAP54524.1| Ubiquinone/menaquinone biosynthesis methyltransferase ubi
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 256

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF- 269
             +L+L CG G+ S   A H  +V+A ++    ++A         ++N+   R +++   
Sbjct: 49  ARVLDLGCGGGHVSYRAAPHVGQVVACDVTPDMLDAVARTAIERGLDNIVTQRAAAESLP 108

Query: 270 -----TQAMRREREFNRLKDIDIHSYRFKTIF 296
                  A+      +  +DID      + + 
Sbjct: 109 FTDAAFDAVLCRFTAHHWRDIDAGLREARRVL 140


>gi|78186140|ref|YP_374183.1| Mg-protoporphyrin IX methyl transferase [Chlorobium luteolum DSM
           273]
 gi|78166042|gb|ABB23140.1| Magnesium protoporphyrin O-methyltransferase [Chlorobium luteolum
           DSM 273]
          Length = 232

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NV 259
           W+          +L+  CG G FS+ LA+   RV + +IA   VE  + +  A  V  N+
Sbjct: 57  WIEQLGLPKGAHILDAGCGTGLFSIRLAQAGYRVTSADIASQMVEKTKADATAAGVAGNM 116

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           +    S +  + +      F+ L       +
Sbjct: 117 EFQVESIESVSGSYDAVVCFDVLIHYPSEGF 147


>gi|297566490|ref|YP_003685462.1| hypothetical protein Mesil_2082 [Meiothermus silvanus DSM 9946]
 gi|296850939|gb|ADH63954.1| Protein of unknown function methylase putative [Meiothermus
           silvanus DSM 9946]
          Length = 172

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV--- 259
           L +    +G  L+LY G+G   L  A     V+ VE    +V   R N    H+      
Sbjct: 36  LRSRYPRKGRFLDLYAGSGAIGLEAASEGFEVVLVEKDPQAVRILRANALKAHLEVRIEP 95

Query: 260 ----KIVRMSS---KEFTQAMRRER-------EFNRLKDIDIHSYRFKTIFVDP 299
               + + +++   ++FT A            +F RL   D+ +     I   P
Sbjct: 96  QSVERYLALAARRGEQFTVAFMAPPYPHNLLEDFERLLQADLAAPGGIYILQHP 149


>gi|193216311|ref|YP_001997510.1| type 11 methyltransferase [Chloroherpeton thalassium ATCC 35110]
 gi|193089788|gb|ACF15063.1| Methyltransferase type 11 [Chloroherpeton thalassium ATCC 35110]
          Length = 213

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 45/109 (41%), Gaps = 14/109 (12%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L++ CG GNFS+ +AR   +V  V+I+   +  A+  +    + N++ +        
Sbjct: 41  AKVLDIGCGTGNFSIKMARRGFQVTGVDISGEMISVAKKRLMETRLPNLQFLH------I 94

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
             +    E N   D  I S+    +   PP        + ++Q+   + 
Sbjct: 95  NGVYLPDELNEHYDAAILSFSIHEMA--PPER------LALIQSLKKVA 135


>gi|194214910|ref|XP_001497936.2| PREDICTED: trimethylguanosine synthase homolog (S. cerevisiae)
           [Equus caballus]
          Length = 946

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
             +++ +CG G  ++  A    RV+A++I    ++ AR N     + + ++ +       
Sbjct: 695 DTVVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGDFLLL 754

Query: 270 TQAMRREREF 279
              ++ +  F
Sbjct: 755 ASQLKADVVF 764


>gi|209543585|ref|YP_002275814.1| type 11 methyltransferase [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531262|gb|ACI51199.1| Methyltransferase type 11 [Gluconacetobacter diazotrophicus PAl 5]
          Length = 256

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF- 269
             +L+L CG G+ S   A H  +V+A ++    ++A         ++N+   R +++   
Sbjct: 49  ARVLDLGCGGGHVSYRAAPHVGQVVACDVTPDMLDAVARTAIERGLDNIVTQRAAAESLP 108

Query: 270 -----TQAMRREREFNRLKDIDIHSYRFKTIF 296
                  A+      +  +DID      + + 
Sbjct: 109 FTDAAFDAVLCRFTAHHWRDIDAGLREARRVL 140


>gi|119026137|ref|YP_909982.1| hypothetical protein BAD_1119 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765721|dbj|BAF39900.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 203

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 22/118 (18%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A     +G  L+L CG G  +L L  A     + A+++ + ++E  R N   N + N+  
Sbjct: 55  APEPPEEGTFLDLGCGWGPIALALGFASPKADIWALDVNERALELTRRNAELNGMGNIHA 114

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
                                         F  I+ +PP R G +     ++   P +
Sbjct: 115 ATADG-------------------IPAETTFDLIWSNPPIRVGKEVLHTLLMTWLPRL 153


>gi|319440511|ref|ZP_07989667.1| putative DNA methylase [Corynebacterium variabile DSM 44702]
          Length = 190

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 203 LAATKGIQGDL-LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L    G  G++ L+L+ G+G   L   +R    V  V+    + E AR N         +
Sbjct: 36  LQVRFGFDGEVVLDLFAGSGALGLEAASRGAAEVTLVDDNNRACEIARANAVVVGHPATR 95

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +V   +  F     R+               +  +  DPP    D+A   MV+A
Sbjct: 96  VVEAKASVFLSGAPRD--------------HYTMVLADPPYELADEAVDEMVRA 135


>gi|317484589|ref|ZP_07943494.1| hypothetical protein HMPREF0179_00845 [Bilophila wadsworthia 3_1_6]
 gi|316924165|gb|EFV45346.1| hypothetical protein HMPREF0179_00845 [Bilophila wadsworthia 3_1_6]
          Length = 394

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            V AA       +L+ +C  G F ++ AR+    V  ++ ++ +++ A  N+AAN     
Sbjct: 210 RVEAAKYAKGKTVLDAFCYAGAFGVMAARNGAAGVTFLDASRQALDMASRNLAANAGCPG 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL-DDATVGMVQAYPHI 318
           + +   + +   ++R                +F  + VDPP            + AY  +
Sbjct: 270 ETLPGDALDTLASLRD------------GGRKFGVVCVDPPAFIKRKKDAEQGLNAYRRV 317


>gi|308390164|gb|ADO32484.1| hemk protein [Neisseria meningitidis alpha710]
          Length = 273

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 83/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISTPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|308186309|ref|YP_003930440.1| UPF0064 protein [Pantoea vagans C9-1]
 gi|308056819|gb|ADO08991.1| UPF0064 protein [Pantoea vagans C9-1]
          Length = 396

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L      V++V+ ++ +++ AR N+  N ++ +
Sbjct: 212 RLATRRYAQDARVLNCFSYTGGFAVSALMGGCKEVISVDTSQEALDVARQNVELNELD-L 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
              R    +  + +RR R+            +F  I +DPP+   +    +G  + Y  I
Sbjct: 271 SRARFERDDVFKLLRRYRD---------SGEKFDLIIMDPPKFVENKSQLMGACRGYKDI 321


>gi|307352672|ref|YP_003893723.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307155905|gb|ADN35285.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 282

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEI 239
           R+    F   NA  N   ++++L       G  +L++  G G  ++ +A   D V  VE 
Sbjct: 36  REEARGFL-NNAIKNPERVQFILEKLPLSPGLRVLDIGSGPGTIAVPVAGQVDHVTGVEP 94

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +    +      A   V+N+ I+R   +E 
Sbjct: 95  SPGMADVMEEYAAEKGVDNLDIIRKRWEEI 124


>gi|307266433|ref|ZP_07547969.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918541|gb|EFN48779.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 308

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 69/223 (30%), Gaps = 37/223 (16%)

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
           YF   S  I+ + I +   I         +   D   S+ D+A             W++ 
Sbjct: 66  YFPIASDTIDRINI-LKDRIVELKSFGVDIGNFDLKVSEVDEADWA--------SNWKQY 116

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
              L+                   KI +   +  E        +I               
Sbjct: 117 YKPLKI----------------GKKIVIKPSW--EEYVSQEEEIIIELDPGMAFGTGTHE 158

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L      +  + ++ CG+G  S+  ++     V A +I + SVE AR NI  
Sbjct: 159 TTKMCLEFLEEIVIPERIVFDVGCGSGILSIASSKLGAKEVYAADIDEASVEVARQNIEL 218

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           N++ NVK+ +              EF    DI + +     I 
Sbjct: 219 NNLQNVKVFKSDL---------LGEFRGKADIIVANIIADVII 252


>gi|312110955|ref|YP_003989271.1| methyltransferase type 11 [Geobacillus sp. Y4.1MC1]
 gi|311216056|gb|ADP74660.1| Methyltransferase type 11 [Geobacillus sp. Y4.1MC1]
          Length = 266

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 14/125 (11%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L CG G    + AR      RV+ V++    +  AR N A     N +      +  
Sbjct: 83  VLDLGCGAGFDCFLAARQVGETGRVIGVDMTPEMISKARNNAAKGGFTNTEFRLGEIEYL 142

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTI-----FVDPPRSGLDDATVGMVQAYPHI------ 318
             A            I++   + +        + P    +    V   +    I      
Sbjct: 143 PVADGSVDVIISNCVINLSPDKPQVFKEAYRVLKPGGRLVISDVVATAELPSEIKNNMDV 202

Query: 319 LYISC 323
           LY  C
Sbjct: 203 LYSGC 207


>gi|261819605|ref|YP_003257711.1| hypothetical protein Pecwa_0250 [Pectobacterium wasabiae WPP163]
 gi|261603618|gb|ACX86104.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163]
          Length = 273

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 9/102 (8%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           ++ +++          LL++ CG G+  L +A   ++V  ++ ++  ++ AR    A  +
Sbjct: 47  YLEQFIANMDFSDAKTLLDVGCGPGSVCLNVASRLEQVYGIDYSEGMLDVARRRADAMGI 106

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            N      +          E ++  L D DI      T+ +D
Sbjct: 107 TNATFAHRA---------WEDDWANLPDCDIVVASRSTLVMD 139


>gi|167563790|ref|ZP_02356706.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           oklahomensis EO147]
 gi|167570929|ref|ZP_02363803.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           oklahomensis C6786]
          Length = 217

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++LE+  G+G  + +LA    RV  VEI     + A  N+
Sbjct: 63  PRVEARVLQELAVKKHE---NVLEIGAGSGYMAALLAARGQRVTTVEIDPALAKFAEENL 119

Query: 252 AANHVNNVKIVRMS 265
             N V NV++    
Sbjct: 120 KKNGVTNVEVALGD 133


>gi|119469498|ref|ZP_01612402.1| predicted methyltransferase [Alteromonadales bacterium TW-7]
 gi|119447033|gb|EAW28303.1| predicted methyltransferase [Alteromonadales bacterium TW-7]
          Length = 396

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 16/122 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
                       +L  +   G FSL  L      V  V++++P+++ A+ N+  N+++  
Sbjct: 212 RAALERFSKDKTVLNCFSYTGTFSLYALRGGCTHVTNVDVSQPALDTAKRNVEHNNLDLN 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYP 316
            V  V+    +  +  R E              +F TI +DPP+   + A   G  + Y 
Sbjct: 272 KVDFVKQDVFKLLRQYRDE------------GKQFDTIVMDPPKFADNKAQLTGACRGYK 319

Query: 317 HI 318
            I
Sbjct: 320 DI 321


>gi|86606891|ref|YP_475654.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Synechococcus sp. JA-3-3Ab]
 gi|86555433|gb|ABD00391.1| cyclopropane-fatty-acyl-phospholipid synthase family protein
           [Synechococcus sp. JA-3-3Ab]
          Length = 282

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV 256
           +++W           +L+L CG G  SL LAR F   V  + ++    + A     A  +
Sbjct: 53  VIQWGQIGDPKPPRHILDLGCGIGGSSLELARRFGAEVTGITLSPVQAQRAEERAQAAGL 112

Query: 257 NN-VKIVRMSSKE 268
           +N V+     + +
Sbjct: 113 SNRVRFWVADALD 125


>gi|255088850|ref|XP_002506347.1| predicted protein [Micromonas sp. RCC299]
 gi|226521619|gb|ACO67605.1| predicted protein [Micromonas sp. RCC299]
          Length = 449

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           L +  CG G F++  A+   RV A ++       AR N   N V N VK   M ++E  +
Sbjct: 236 LCDAMCGIGPFAVPAAKAGRRVYANDLNPSCARYARVNCVGNKVKNLVKCYNMCARELIR 295

Query: 272 AMRREREFNRLKDIDI 287
            + R  +     +  +
Sbjct: 296 KLLRPGKVEDTGETTV 311


>gi|163749251|ref|ZP_02156500.1| hypothetical protein KT99_08313 [Shewanella benthica KT99]
 gi|161330970|gb|EDQ01896.1| hypothetical protein KT99_08313 [Shewanella benthica KT99]
          Length = 337

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 32/160 (20%)

Query: 209 IQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266
           +   +L L+          A     RV+ V+ +  ++ A + N   N+V++  + V+  +
Sbjct: 148 LNKTVLNLFSYTCGIGTAAAVGGASRVMNVDFSSFALTAGKKNAELNNVDDVCEFVQSDA 207

Query: 267 KEFTQAMRREREFNRL-----KDIDIHSYRFKTIFVDPPRSGLDDATV------------ 309
               + +   +   R      K   + + +F  +F+DPPR       +            
Sbjct: 208 FPALRQLAGLKVGGRRNQKLPKYPKLTATQFDLVFLDPPRFAKSPFGIVDLINDYQSLFK 267

Query: 310 -GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348
             ++   P    I CN      +++       +ER A FD
Sbjct: 268 PALLTTKPGGTIICCN------NVA------KVERAAWFD 295


>gi|148257644|ref|YP_001242229.1| Mg-protoporphyrin IX methyl transferase [Bradyrhizobium sp. BTAi1]
 gi|146409817|gb|ABQ38323.1| Mg-protoporphyrin IX methyl transferase [Bradyrhizobium sp. BTAi1]
          Length = 233

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +L W+    +G    LL+  CG G+FS+  AR    V+AV+I+   +E AR  +  + 
Sbjct: 50  RTLLSWLPLDLRG--ARLLDAGCGTGSFSIEAARRGAEVVAVDISPTLIEIARRRLPDDI 107

Query: 256 VNNV-KIVRMSSKE 268
             N    V     +
Sbjct: 108 SRNAIHFVAGDMLD 121


>gi|18976509|ref|NP_577866.1| putative methyltransferase [Pyrococcus furiosus DSM 3638]
 gi|18892058|gb|AAL80261.1| putative methyltransferase [Pyrococcus furiosus DSM 3638]
          Length = 228

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           ++      +G +L+L CG G FS  L      V+ ++     +EAA+          V  
Sbjct: 32  LIKYMNKNRGKVLDLACGVGGFSFFLEDLGFDVVGLDNNPEMIEAAKRYAEKRSSK-VNF 90

Query: 262 VRMSSKEF 269
           V   +K  
Sbjct: 91  VVGDAKNL 98


>gi|27904664|ref|NP_777790.1| hypothetical protein bbp162 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|32129595|sp|Q89AT0|HEMK_BUCBP RecName: Full=Protein methyltransferase hemK homolog
 gi|27904061|gb|AAO26895.1| HemK [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 277

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 11/136 (8%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L   K +    +L+L  G G+ +L LA  R   +++ ++  K S+  A  N 
Sbjct: 96  TEILVEKALIYLKNLSNAKVLDLGTGCGSIALALASERLDCKIIGIDCVKESISIASKNA 155

Query: 252 AANHVNNVKIVR-------MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
               + NV  +         +  +   +      F+ +K++D        I +    +GL
Sbjct: 156 KILKLKNVSFLHSIWFSKVDNMFDMIVSNPPYLSFSEMKNVDKEVLFEPFIALFSSENGL 215

Query: 305 DDATVGMVQAYPHILY 320
             A   +++     LY
Sbjct: 216 G-AIRHIIKYSKKYLY 230


>gi|219669847|ref|YP_002460282.1| methyltransferase [Desulfitobacterium hafniense DCB-2]
 gi|219540107|gb|ACL21846.1| methyltransferase [Desulfitobacterium hafniense DCB-2]
          Length = 180

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 16/107 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L+ G GN +L  L+R     + +E ++ + +  R NI    +   +++ M +  +
Sbjct: 43  ARVLDLFAGTGNLALEALSRGAKEAVLIEKSRTAQQIIRENIDHMGIEQARLIGMDAFAY 102

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAY 315
            +  R ER              F  IF+DPP   GL + ++ ++ A 
Sbjct: 103 LEQHREER--------------FDLIFIDPPYHQGLVEKSLKLLAAP 135


>gi|312961598|ref|ZP_07776097.1| methyltransferase small [Pseudomonas fluorescens WH6]
 gi|311284139|gb|EFQ62721.1| methyltransferase small [Pseudomonas fluorescens WH6]
          Length = 314

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-- 228
           L  A       Q +  F  P++     ++E  L          +++ CG G  +LV+A  
Sbjct: 96  LLFAHSPYPTTQADAVFFGPDSYRFAQVIEAHLQQRFEPIKCAVDIGCGAGVGALVIAQA 155

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           RH  +VLAV+I   ++  +  N     ++NV++ +  
Sbjct: 156 RHDAQVLAVDINPRALRMSAVNAELAGLSNVRVYQSD 192


>gi|149774747|gb|ABR28419.1| ubiquinone biosynthesis O-methyl-transferase [Delftia
           tsuruhatensis]
          Length = 240

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 59/154 (38%), Gaps = 10/154 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+W+ A        +L++ CG G  +  +AR     V+ +++A  ++  A+ +
Sbjct: 35  HQINPLRLDWIDAQVPLKGRRILDVGCGGGILADSMARKGAREVVGIDLATKALRVAQLH 94

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                  N+    +S +   Q      +     ++  H     ++           A   
Sbjct: 95  ALETGTPNIHYHEVSVERLAQEQPGSFDVVTCMEMLEHVPDPASVV---------SACAE 145

Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
           +V+    + + + N  +    L+I++  + ++ +
Sbjct: 146 LVKPGGWVFFSTINRSAKAFGLAIVAAEYLLKMI 179


>gi|54026161|ref|YP_120403.1| hypothetical protein nfa41900 [Nocardia farcinica IFM 10152]
 gi|54017669|dbj|BAD59039.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 188

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 15/108 (13%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +   + A        +L+LY G+G  +L  L+R   R L VE  + + +  R NIA
Sbjct: 28  VREALFSALAARMDFAGARVLDLYAGSGALALEALSRGAARALLVESDRRAAQVVRANIA 87

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              ++  ++   S     +                 +  F  +F DPP
Sbjct: 88  ELGLSGAELRVGSVGAVLEQG--------------GAGEFDLVFADPP 121


>gi|22299269|ref|NP_682516.1| delta(24)-sterol C-methyltransferase [Thermosynechococcus elongatus
           BP-1]
 gi|22295452|dbj|BAC09278.1| delta(24)-sterol C-methyltransferase [Thermosynechococcus elongatus
           BP-1]
          Length = 328

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y  E + +    L  R     F Q        M+ W           +L++ CG G  S 
Sbjct: 52  YWGEHIHLGHYGLPPR--PKDFRQAKVDFVHEMVRWAGLDRLPPGTTVLDVGCGIGGSSR 109

Query: 226 VLARHFD-RVLAVEIAKPSVEAARY 249
           +LAR +   V  + I+   V  AR 
Sbjct: 110 ILARDYGFHVTGITISPEQVRRARE 134


>gi|319795451|ref|YP_004157091.1| protein-(glutamine-n5) methyltransferase, release factor-specific
           [Variovorax paradoxus EPS]
 gi|315597914|gb|ADU38980.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Variovorax paradoxus EPS]
          Length = 282

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 22/125 (17%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNI 251
              +++W L   +      +L+L  G+G  +L L  AR   +V AV+ +  ++  A  N 
Sbjct: 101 TETLVDWALQCLEDRNAPRVLDLGTGSGAIALALQHARPDAQVDAVDASADALAVAEANA 160

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +                      F     +D  +  +  I  +PP    +D  +  
Sbjct: 161 RRLGL-------------------PVRFALAHWLDGAADGYTAIASNPPYIAANDPHLPA 201

Query: 312 VQAYP 316
           ++  P
Sbjct: 202 LRHEP 206


>gi|305662621|ref|YP_003858909.1| methyltransferase small [Ignisphaera aggregans DSM 17230]
 gi|304377190|gb|ADM27029.1| methyltransferase small [Ignisphaera aggregans DSM 17230]
          Length = 198

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 53/147 (36%), Gaps = 27/147 (18%)

Query: 177 TLIYRQIENSFT--QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFD 232
           T+ +  I   F+  Q        ++E         +G +L+L CG G   +V+A      
Sbjct: 26  TVEFEVIPGLFSYRQI-DEGTRLLIE---NLEIPSEGRVLDLGCGYGAIGIVVALLNPKL 81

Query: 233 RVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
            V  V+I + +V  A  N+  N ++   +KI + +  E                  +   
Sbjct: 82  EVYMVDINREAVRLAERNVIRNKIDPQRIKIFQGNLYE-----------------PVKDI 124

Query: 291 RFKTIFVDPPRSGLDDATVGMVQAYPH 317
            F  I+ +PP S        ++   P 
Sbjct: 125 LFNAIYSNPPYSAGSQVIEELITQAPQ 151


>gi|304397122|ref|ZP_07379001.1| PUA domain containing protein [Pantoea sp. aB]
 gi|304355271|gb|EFM19639.1| PUA domain containing protein [Pantoea sp. aB]
          Length = 396

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L      V++V+ ++ +++ AR N+  N ++ +
Sbjct: 212 RLATRRYAQDARVLNCFSYTGGFAVSALMGGCKEVISVDTSQEALDVARQNVELNELD-L 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
              R    +  + +RR R+            +F  I +DPP+   +    +G  + Y  I
Sbjct: 271 SRARFERDDVFKLLRRYRD---------SGEKFDLIIMDPPKFVENKSQLMGACRGYKDI 321


>gi|296270988|ref|YP_003653620.1| type 12 methyltransferase [Thermobispora bispora DSM 43833]
 gi|296093775|gb|ADG89727.1| Methyltransferase type 12 [Thermobispora bispora DSM 43833]
          Length = 258

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 6/86 (6%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+L CG G  +  +A     VL ++ ++  +EAA           ++     + +FT 
Sbjct: 41  RVLDLGCGTGVLTAEIAARGAHVLGIDASRAMIEAAMA-----KYPGLEFTVGDAHDFTV 95

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFV 297
           A   +  F+    +   S     +  
Sbjct: 96  AHPYDAVFSN-AALHWMSRDPDAVIS 120


>gi|238926220|ref|ZP_04657980.1| methyltransferase [Selenomonas flueggei ATCC 43531]
 gi|238885900|gb|EEQ49538.1| methyltransferase [Selenomonas flueggei ATCC 43531]
          Length = 272

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 4/153 (2%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
              L         +L++  G G+F +  A       AVE +   V   R N AA  V+N 
Sbjct: 57  YAALRHILSADATMLDIGAGPGSFIIPFAEKIKFAAAVEPSHEMVRLLRENAAAAGVSNY 116

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--- 316
            ++    ++       +R F+ +    +         +         A   +V   P   
Sbjct: 117 AVIEELVQDLPVGGALDRAFDLVTVSLVFWMYADVWPLILQMEAYTKAYCAIVAEIPDKK 176

Query: 317 -HILYISCNPDSLCRDLSILSTTHTIERLALFD 348
                 SC+ +      ++L+       +   D
Sbjct: 177 NPRSASSCDVEEFQILYNMLAAQGRFANVRTID 209


>gi|237813872|ref|YP_002898323.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           MSHR346]
 gi|237503463|gb|ACQ95781.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           MSHR346]
          Length = 302

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  ++I   +VEAAR+N   N  
Sbjct: 158 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGIDIDPQAVEAARHNSERNRA 215

Query: 257 N 257
           +
Sbjct: 216 D 216


>gi|197116641|ref|YP_002137068.1| ribosomal protein L11 methyltransferase [Geobacter bemidjiensis
           Bem]
 gi|226710086|sp|B5E9X4|PRMA_GEOBB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|197086001|gb|ACH37272.1| ribosomal protein L11 methyltransferase [Geobacter bemidjiensis
           Bem]
          Length = 306

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 81/256 (31%), Gaps = 32/256 (12%)

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL-DRDYVD 168
           L +  D  + ++  +  LDD+  E  IR+   L            A      + + D+ +
Sbjct: 44  LDTLEDTPLKSVKGYLPLDDSLEEMRIRIEQFLAQTGPSFPGYVYAPPVVTVIRNEDWAN 103

Query: 169 ---------------------ERLTVAGRTLIYRQIEN-SF---TQPNAGINVHMLEWVL 203
                                E        L+ +     +F     P   + +  LE + 
Sbjct: 104 NWKVHFKPVRIGQRLVIKPTWEEYLKLEGDLVIQIDPGMAFGTGAHPTTKMCLEALERIC 163

Query: 204 AATKG--IQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
               G  +   +L++  G+G  S+  A      ++AV+I   +V     N+  N V ++ 
Sbjct: 164 FDASGGKLPSPVLDVGTGSGVLSIAAALLGAKEIVAVDIDPEAVRVTMENLELNGVADLV 223

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
               +S E      R    N L +  +      T  V P   G      G++      + 
Sbjct: 224 AASTTSLEQLPGGFRVVVANILAEELVRLADELTARVAP---GGWLILSGILTEKEAFVC 280

Query: 321 ISCNPDSLCRDLSILS 336
            + N   L  +   L 
Sbjct: 281 AAFNSLELVENPKELE 296


>gi|148530049|gb|ABQ82233.1| SAM-dependent methyltransferase [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 138

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF- 269
             +L+L CG G+ S   A H  +V+A ++    ++A         ++N+   R +++   
Sbjct: 8   ARVLDLGCGGGHVSYRAAPHVGQVVACDVTPDMLDAVARTAIERGLDNIVTQRAAAESLP 67

Query: 270 -----TQAMRREREFNRLKDIDIHSYRFKTIF 296
                  A+      +  +DID      + + 
Sbjct: 68  FTDAAFDAVLCRFTAHHWRDIDAGLREARRVL 99


>gi|86158158|ref|YP_464943.1| hypothetical protein Adeh_1733 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774669|gb|ABC81506.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 179

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 16/94 (17%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKE 268
           GD+L+LY G G  +L  L+R   R + VE  +P+ E  R N       + V++VR    E
Sbjct: 44  GDVLDLYAGTGALALEALSRGCARAVCVEADRPTAELLRRNAETCGWADRVEVVRGRVPE 103

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
               +                 RF   FVDPP +
Sbjct: 104 ALARL--------------APGRFALAFVDPPYA 123


>gi|53726117|ref|YP_104049.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121601286|ref|YP_991774.1| ribosomal protein L11 methyltransferase [Burkholderia mallei SAVP1]
 gi|124385858|ref|YP_001027267.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126450877|ref|YP_001082797.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10247]
 gi|166998585|ref|ZP_02264443.1| ribosomal protein L11 methyltransferase [Burkholderia mallei
           PRL-20]
 gi|238561259|ref|ZP_00442332.2| ribosomal protein L11 methyltransferase [Burkholderia mallei GB8
           horse 4]
 gi|254178904|ref|ZP_04885558.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           10399]
 gi|254202768|ref|ZP_04909131.1| ribosomal protein L11 methyltransferase [Burkholderia mallei FMH]
 gi|254208110|ref|ZP_04914460.1| ribosomal protein L11 methyltransferase [Burkholderia mallei JHU]
 gi|60390319|sp|Q62GX2|PRMA_BURMA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223398|sp|A3MRB1|PRMA_BURM7 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223399|sp|A2S5P8|PRMA_BURM9 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223400|sp|A1V0M1|PRMA_BURMS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|52429540|gb|AAU50133.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           23344]
 gi|121230096|gb|ABM52614.1| ribosomal protein L11 methyltransferase [Burkholderia mallei SAVP1]
 gi|124293878|gb|ABN03147.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10229]
 gi|126243747|gb|ABO06840.1| ribosomal protein L11 methyltransferase [Burkholderia mallei NCTC
           10247]
 gi|147747015|gb|EDK54092.1| ribosomal protein L11 methyltransferase [Burkholderia mallei FMH]
 gi|147752004|gb|EDK59071.1| ribosomal protein L11 methyltransferase [Burkholderia mallei JHU]
 gi|160694818|gb|EDP84826.1| ribosomal protein L11 methyltransferase [Burkholderia mallei ATCC
           10399]
 gi|238524959|gb|EEP88389.1| ribosomal protein L11 methyltransferase [Burkholderia mallei GB8
           horse 4]
 gi|243065269|gb|EES47455.1| ribosomal protein L11 methyltransferase [Burkholderia mallei
           PRL-20]
          Length = 300

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  ++I   +VEAAR+N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGIDIDPQAVEAARHNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|310795322|gb|EFQ30783.1| methyltransferase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 283

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGN----FSLVLARHFDRVLAVEIAKPSVEAA 247
             +   +++W+      +   +L++ CG+G     F  +LA+    +  ++ +   + AA
Sbjct: 22  PKLATKVVQWLDVQKDDV---ILDIGCGDGILDVEFGKILAQGTGSLHGIDASPAMISAA 78

Query: 248 RYNIAANHVNNVKIVRMSSKEFT 270
           +  +  + ++N +   + + +  
Sbjct: 79  KKAVEGSGLSNCEFEVLDATKMA 101


>gi|309802490|ref|ZP_07696596.1| methyltransferase small domain protein [Bifidobacterium dentium
           JCVIHMP022]
 gi|308220890|gb|EFO77196.1| methyltransferase small domain protein [Bifidobacterium dentium
           JCVIHMP022]
          Length = 216

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 21/111 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +G  L+L CG G  +L +A       V A+++ + ++E  + N   N +  +     
Sbjct: 71  PAQEGTFLDLGCGWGPIALTMAFESPKADVWALDVNERALELTKRNAEINGIGTIHAATA 130

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                              D   H   F  I+ +PP     +A   ++ A+
Sbjct: 131 -------------------DEIPHDLTFDLIWSNPPIRIGKEALHELLMAW 162


>gi|306822412|ref|ZP_07455790.1| 16S rRNA methyltransferase [Bifidobacterium dentium ATCC 27679]
 gi|304553957|gb|EFM41866.1| 16S rRNA methyltransferase [Bifidobacterium dentium ATCC 27679]
          Length = 219

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 21/111 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
              +G  L+L CG G  +L +A       V A+++ + ++E  + N   N +  +     
Sbjct: 74  PAQEGTFLDLGCGWGPIALTMAFESPKADVWALDVNERALELTKRNAEINGIGTIHAATA 133

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                              D   H   F  I+ +PP     +A   ++ A+
Sbjct: 134 -------------------DEIPHDLTFDLIWSNPPIRIGKEALHELLMAW 165


>gi|302841631|ref|XP_002952360.1| hypothetical protein VOLCADRAFT_81828 [Volvox carteri f.
           nagariensis]
 gi|300262296|gb|EFJ46503.1| hypothetical protein VOLCADRAFT_81828 [Volvox carteri f.
           nagariensis]
          Length = 429

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 55/158 (34%), Gaps = 16/158 (10%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL 214
           + ++      ++  +T       +R     F+Q   N+ +    L  V +  +G    L+
Sbjct: 193 EMEVIAGEKKLETEVTQH--GARFRL---DFSQVYWNSRLESEHLRLVSSFQQGQV--LV 245

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQA 272
           ++  G G F++  A+    V A ++   S      N   N +    + +  M  + F + 
Sbjct: 246 DMMAGIGPFAIPAAQKGLTVYANDLNPRSAHYLAVNARLNRLGPSGLHVFNMDGRAFLRL 305

Query: 273 MRRE-----REFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           +         +             F  + ++ P S ++
Sbjct: 306 LNSADLGSLPDVPECFAPPAGGVVFDHLVMNLPASAIE 343


>gi|296226495|ref|XP_002758952.1| PREDICTED: trimethylguanosine synthase [Callithrix jacchus]
          Length = 867

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+AV+I    +  AR N     + + ++ +         
Sbjct: 696 VVDAFCGVGGNTIQFALTGMRVIAVDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAP 755

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            ++ +  F            + T      R+ +      + +    I
Sbjct: 756 CLKADVVF---LSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKI 799


>gi|258627564|ref|ZP_05722341.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|258580146|gb|EEW05118.1| conserved hypothetical protein [Vibrio mimicus VM603]
          Length = 397

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 30/180 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH       ++   N  KI +D       +    +T  Y    +S  Q  
Sbjct: 163 KEGLEERVGVLHGELPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDSRFQ-- 213

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                       +       ++L  +   G F L  L     RV+  ++++P+++ A+ N
Sbjct: 214 ------------SMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKLN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N             +          F  L++      RF  + +DPP+     A + 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 313


>gi|228940007|ref|ZP_04102581.1| Methyltransferase type 11 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228972902|ref|ZP_04133497.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786775|gb|EEM34759.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819619|gb|EEM65670.1| Methyltransferase type 11 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|326940662|gb|AEA16558.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 261

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 190 PNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            N+ I        H+++ V +        LL++  G G+ + +LA  F+ V+A+++ +  
Sbjct: 19  VNSKIHAKGQDLQHVVQQVESRHNN---RLLDVATGGGHVANMLAPMFEEVVALDLTEQM 75

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +E A+  I  N   NV  V  ++++   A
Sbjct: 76  LEKAKSFIKQNGHENVSFVAGNAEDLPFA 104


>gi|218437960|ref|YP_002376289.1| Mg-protoporphyrin IX methyl transferase [Cyanothece sp. PCC 7424]
 gi|218170688|gb|ACK69421.1| magnesium protoporphyrin O-methyltransferase [Cyanothece sp. PCC
           7424]
          Length = 229

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA--ANH 255
           +++W+ +     +  + +  CG G+ S+ LA+   +V A +I++  V  AR         
Sbjct: 50  VIDWLKSDGNLAELSICDAGCGVGSLSIPLAQAGAKVWASDISEKMVGEAREKAKEVLGE 109

Query: 256 VNNVKIVRMSSKEF 269
           + N        +  
Sbjct: 110 IYNPTFSVQDLESL 123


>gi|53720593|ref|YP_109579.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           K96243]
 gi|167740256|ref|ZP_02413030.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           14]
 gi|167817474|ref|ZP_02449154.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           91]
 gi|167847363|ref|ZP_02472871.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           B7210]
 gi|60390329|sp|Q63QN9|PRMA_BURPS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|52211007|emb|CAH36995.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           K96243]
          Length = 300

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  ++I   +VEAAR+N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGIDIDPQAVEAARHNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|325959931|ref|YP_004291397.1| type 12 methyltransferase [Methanobacterium sp. AL-21]
 gi|325331363|gb|ADZ10425.1| Methyltransferase type 12 [Methanobacterium sp. AL-21]
          Length = 261

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A  +  +G + +L  G+G  S   A++ D+V+AVEI + + + A+ N+ A   NNV++V 
Sbjct: 25  AIKEKSKGTVFDLGTGSGVLSSWAAQYADKVVAVEINRTTSKIAQRNLEA--FNNVEVVN 82

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV---GMVQAYPHILY 320
             + ++  + + +     + D  +       +     +   +D  +   G++      + 
Sbjct: 83  ADASKYQFSTKADVIICEMLDTALIDEEQVPVLNSALKYLKEDGVIIPCGIINCIEP-VE 141

Query: 321 ISCNPDSLCRD 331
            SC   S   D
Sbjct: 142 SSCEHISYEED 152


>gi|295702272|ref|YP_003595347.1| methyltransferase [Bacillus megaterium DSM 319]
 gi|294799931|gb|ADF36997.1| methyltransferase [Bacillus megaterium DSM 319]
          Length = 248

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 26/141 (18%)

Query: 166 YVDERLTVAGRTLIYRQ----IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           Y DERL         R        SF      ++  +L    A     +G+L++L  GNG
Sbjct: 5   YGDERLDYLLADEEMRIIQSPSVFSF-----SLDAVLLSH-FAYVPIRKGNLVDLCSGNG 58

Query: 222 NFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF 279
              L L++    +++ VEI +     A+ +IA N ++  +K++    K   Q        
Sbjct: 59  VIPLFLSKRTKGKIIGVEIQERLHSMAQRSIAYNQLDGQIKMIHGDLKNAPQ-------- 110

Query: 280 NRLKDIDIHSYRFKTIFVDPP 300
                 ++   ++  +  +PP
Sbjct: 111 ------ELGYGQYDVVTCNPP 125


>gi|170719525|ref|YP_001747213.1| hypothetical protein PputW619_0338 [Pseudomonas putida W619]
 gi|169757528|gb|ACA70844.1| conserved hypothetical protein [Pseudomonas putida W619]
          Length = 398

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
               A       +L+L+   G + +   A     V  V+ +  +++    N A N +   
Sbjct: 212 RARLAPYVKGKRVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +     E  + ++   E            RF  I  DPP                  
Sbjct: 272 LTCIEGDVFEALRELKAAEE------------RFDVIIADPPAFIKRKKDLKNGEAAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + M+     ++  SC
Sbjct: 320 LNEQAMRMLTKDGILVSASC 339


>gi|56698314|ref|YP_168687.1| UbiE/COQ5 family methlytransferase [Ruegeria pomeroyi DSS-3]
 gi|56680051|gb|AAV96717.1| methyltransferase, UbiE/COQ5 family [Ruegeria pomeroyi DSS-3]
          Length = 210

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           AA       +LEL CG G+ +L LA     ++A +IA   +   R       V NV  V 
Sbjct: 34  AAHLKPGDRVLELGCGTGSTALRLAPDVAAIVATDIAPAMLAVGRRKAREQGVENVDFVE 93

Query: 264 MSSK 267
             +K
Sbjct: 94  APAK 97


>gi|304436742|ref|ZP_07396710.1| methyltransferase domain protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370222|gb|EFM23879.1| methyltransferase domain protein [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 272

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 4/153 (2%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
              L         +L++  G G+F +  A       AVE +   V   R N AA  V+N 
Sbjct: 57  YAALRHILSADTTMLDIGAGPGSFIIPFAEKIKFAAAVEPSHEMVRLLRENAAAAGVSNY 116

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP--- 316
            ++    ++       +R F+ +    +         +         A   +V   P   
Sbjct: 117 AVIEELVQDLPVGGALDRAFDLVTVSLVFWMYADVWPLILQMEAYTKAYCAIVAEIPDKK 176

Query: 317 -HILYISCNPDSLCRDLSILSTTHTIERLALFD 348
                 SC+ +      ++L+       +   D
Sbjct: 177 NPRSASSCDVEEFQILYNMLAAQGRFANVRTID 209


>gi|268326446|emb|CBH40034.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 11 family [uncultured archaeon]
          Length = 276

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++L++  G G+ ++  A    +V AVE A+   +    N     + N++I+    +E + 
Sbjct: 65  EVLDIAAGPGSVTVPFAESVKKVTAVEPAEEMCKRLIENAKKKGLENIEIINKKWEEVSD 124

Query: 272 A 272
           A
Sbjct: 125 A 125


>gi|303272351|ref|XP_003055537.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463511|gb|EEH60789.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 452

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAA 253
            ML W  +   G    +L++ CG G  +  LA  F    RV  V ++      A      
Sbjct: 213 EMLAW--SRFNGTPRKVLDVGCGIGGATRHLANKFGSNTRVTGVTLSPKQARRAGELALK 270

Query: 254 NHVNNVKIVRMSSKE 268
             V N + + M + E
Sbjct: 271 QGVPNAEFLVMDALE 285


>gi|76812155|ref|YP_334873.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710b]
 gi|126439278|ref|YP_001060478.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           668]
 gi|254258318|ref|ZP_04949372.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710a]
 gi|254299321|ref|ZP_04966771.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           406e]
 gi|123597942|sp|Q3JNI0|PRMA_BURP1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223401|sp|A3NDQ7|PRMA_BURP6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|76581608|gb|ABA51083.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710b]
 gi|126218771|gb|ABN82277.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           668]
 gi|157809259|gb|EDO86429.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           406e]
 gi|254217007|gb|EET06391.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           1710a]
          Length = 300

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  ++I   +VEAAR+N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGIDIDPQAVEAARHNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|18410430|ref|NP_567034.1| Met-10+ like family protein [Arabidopsis thaliana]
 gi|16604635|gb|AAL24110.1| unknown protein [Arabidopsis thaliana]
 gi|28393917|gb|AAO42366.1| unknown protein [Arabidopsis thaliana]
 gi|332645959|gb|AEE79480.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein
           [Arabidopsis thaliana]
          Length = 468

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFT 270
            + +++ G G F++  A+    V A ++   SV   + N   N V+++  V  M +++F 
Sbjct: 219 TVCDMFAGIGPFAIPAAQKGCFVYANDLNPDSVRYLKINAKFNKVDDLICVHNMDARKFF 278


>gi|50085502|ref|YP_047012.1| methyl transferase [Acinetobacter sp. ADP1]
 gi|49531478|emb|CAG69190.1| methyl transferase [Acinetobacter sp. ADP1]
          Length = 274

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              ++E VL+        +++L  G G  +L LA+   + ++LA +I  P++E A+ N  
Sbjct: 92  TEILIETVLSLDLPEHCSMVDLGTGTGAIALSLAKERPYWKILATDIYFPTLEVAQSNAK 151

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            + +N VK +  +  E   + + +   +    ID +      +  +P R+ + D 
Sbjct: 152 KHALNQVKFLCSAWFEAIPSQKFDLIVSNPPYIDANDEHMLNLGTEPRRALVADK 206


>gi|119718090|ref|YP_925055.1| methyltransferase small [Nocardioides sp. JS614]
 gi|119538751|gb|ABL83368.1| 16S rRNA m(2)G 1207 methyltransferase [Nocardioides sp. JS614]
          Length = 205

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 21/119 (17%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                +QG  L+L CG G   L +A       + A+++   ++  A  N  A  V+  + 
Sbjct: 53  ETEPPVQGRFLDLGCGYGVIGLAIAAAVPLASITAIDVNDRAIALANENARAMRVDG-RF 111

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           V    ++                    +  +  I+ +PP R G       ++   P + 
Sbjct: 112 VACRPEQVPT-----------------NEVYDEIWSNPPIRIGKQALHELLLTWLPRLA 153


>gi|134280036|ref|ZP_01766747.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           305]
 gi|134248043|gb|EBA48126.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           305]
          Length = 302

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV  ++I   +VEAAR+N   N  
Sbjct: 158 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGRVTGIDIDPQAVEAARHNSERNRA 215

Query: 257 N 257
           +
Sbjct: 216 D 216


>gi|295402015|ref|ZP_06811976.1| Methyltransferase type 11 [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975906|gb|EFG51523.1| Methyltransferase type 11 [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 266

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L CG G    + AR      RV+ V++    +  AR N A     N +      +  
Sbjct: 83  VLDLGCGAGFDCFLAARQVGETGRVIGVDMTPEMISKARNNAAKGGFTNTEFRLGEIEYL 142

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTI 295
             A            I++   + +  
Sbjct: 143 PVADSSVDVIISNCVINLSPDKPQVF 168


>gi|289522449|ref|ZP_06439303.1| UbiE/COQ5 methyltransferase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504285|gb|EFD25449.1| UbiE/COQ5 methyltransferase [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 233

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           ++L++ CG GN SL LA+   RV  ++I++  +  AR   A  ++  +      + + 
Sbjct: 44  EILDIGCGTGNLSLELAKLGARVTGIDISEAMLVKAREKAARENL-CINFCCADANDL 100


>gi|239933424|ref|ZP_04690377.1| putative methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291441790|ref|ZP_06581180.1| methyltransferase type 11 [Streptomyces ghanaensis ATCC 14672]
 gi|291344685|gb|EFE71641.1| methyltransferase type 11 [Streptomyces ghanaensis ATCC 14672]
          Length = 246

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ++             +L+L CG G F + LA     V  V++++  ++ AR       
Sbjct: 27  AELVATSPLLRFPPGSRVLDLCCGPGLFLVPLAGQGFDVTGVDLSEAMLDRARSACEEAG 86

Query: 256 VNNVKIVRMSS 266
            + V++VR   
Sbjct: 87  AD-VRLVRADM 96


>gi|159904730|ref|YP_001548392.1| methyltransferase small [Methanococcus maripaludis C6]
 gi|159886223|gb|ABX01160.1| methyltransferase small [Methanococcus maripaludis C6]
          Length = 200

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 19/115 (16%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNV 259
           V         D+L++ CG G   + +A   + V   ++   SV   R N+  N     N+
Sbjct: 48  VEELEFLKSDDVLDVGCGYGVIGISIADEVNSVTMTDVNNRSVSLTRKNVKLNGKSEKNI 107

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           ++ +    E                  + + ++  I  +PP     D    ++  
Sbjct: 108 EVFQGDLYE-----------------KVKNKKYSVIISNPPIKAGKDLIHKIISK 145


>gi|126465946|ref|YP_001041055.1| methyltransferase small [Staphylothermus marinus F1]
 gi|126014769|gb|ABN70147.1| methyltransferase small [Staphylothermus marinus F1]
          Length = 193

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 34/167 (20%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVN-NVKIVRM 264
             +G++L++ CG G   L +A+   R  V  V+I   +V+  +YN   N++   V +++ 
Sbjct: 53  PDEGEVLDVGCGYGVIGLTIAKLNPRLKVYMVDINPLAVKITKYNAKLNNLEKQVVVLQG 112

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
              E                  + + RF  I+ +PP S        +V     I Y+   
Sbjct: 113 DVYE-----------------PVKNLRFNAIYSNPPLSSGMYTVEKIVL--EAINYL--K 151

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECG-----VLLVRKP 366
           PD     +      + +E+        Y RH+E       ++L  KP
Sbjct: 152 PDGFAEFVLARGGEYLVEKARRI----Y-RHVESIRKKGYIILKLKP 193


>gi|7572910|emb|CAB87411.1| putative protein [Arabidopsis thaliana]
          Length = 447

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFT 270
            + +++ G G F++  A+    V A ++   SV   + N   N V+++  V  M +++F 
Sbjct: 198 TVCDMFAGIGPFAIPAAQKGCFVYANDLNPDSVRYLKINAKFNKVDDLICVHNMDARKFF 257


>gi|293402008|ref|ZP_06646148.1| putative SAM-dependent methyltransferase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304666|gb|EFE45915.1| putative SAM-dependent methyltransferase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 291

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNGNF 223
           +  T+  + L ++     F           +   M++ +  A + I   +L L+   G  
Sbjct: 73  DSWTIEYKNLRFKVSPTGFKHTGLFPEQAANWDFMMDKISHADQDI--RVLNLFAYTGGA 130

Query: 224 SLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFN 280
           ++  A      V+ V+ +K  V  A+ N+  +H+ +  ++ +     +F Q  +R     
Sbjct: 131 TMACASAGASEVVHVDASKGMVNWAKENMMLSHLQDRKIRFIVDDVLKFVQREKR----- 185

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDD 306
                      +  I +DPP  G   
Sbjct: 186 -------RGRTYHAIIMDPPSYGRGP 204


>gi|323525177|ref|YP_004227330.1| type 11 methyltransferase [Burkholderia sp. CCGE1001]
 gi|323382179|gb|ADX54270.1| Methyltransferase type 11 [Burkholderia sp. CCGE1001]
          Length = 250

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L  +  A  G  G  +L++ CG G+ S  +A     V+A +IA P +           + 
Sbjct: 30  LRTLAEAIAGTPGASVLDMGCGAGHASFAVAPQAKEVIAYDIAAPMLATVEGAAKERGLA 89

Query: 258 NVKIVRMSSKEF 269
           N++  + ++++ 
Sbjct: 90  NIRTQQGAAEKL 101


>gi|259415044|ref|ZP_05738966.1| methyltransferase, UbiE/COQ5 family [Silicibacter sp. TrichCH4B]
 gi|259348954|gb|EEW60708.1| methyltransferase, UbiE/COQ5 family [Silicibacter sp. TrichCH4B]
          Length = 211

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A+       +LEL CG G+ ++ LA +  ++LA + +   +E  +    A  ++N+K   
Sbjct: 34  ASYLRADQTILELGCGTGSTAVTLAPNVAQMLATDFSAKMIEFGQERARAAGLSNLKFQV 93

Query: 264 MSSKEF----TQAMRREREFNRLKDIDI 287
              +         +     F+ L ++D 
Sbjct: 94  CDLETAPVGPFDVVLAFNLFHLLPELDA 121


>gi|226307403|ref|YP_002767363.1| protein methyltransferase [Rhodococcus erythropolis PR4]
 gi|226186520|dbj|BAH34624.1| protein methyltransferase [Rhodococcus erythropolis PR4]
          Length = 310

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 15/111 (13%)

Query: 195 NVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARY 249
              ++ W L+  +G       +L+L  G+G  +L +A  R    V AVE    ++  AR 
Sbjct: 98  TELLMGWALSFLEGCGSKPPVVLDLCTGSGVLALSIAEARPDAVVHAVEKEPAALAWARR 157

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N A       K + +   + T       + N L  ++        +  +PP
Sbjct: 158 NAADREAAGDKPIHLHQGDVT-------DRNLLPGLE---GGVDLVVSNPP 198


>gi|221120690|ref|XP_002160870.1| PREDICTED: similar to trimethylguanosine synthase homolog [Hydra
           magnipapillata]
          Length = 265

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A   + V+A++I    +E AR N A   V N +  +         
Sbjct: 106 VVDAFCGIGGNTIQFALKSNHVIAIDIDPVRLECARQNAAIYGVENRISFILGDFFVLAP 165

Query: 272 AMRREREF 279
           +++ +  F
Sbjct: 166 SLKADVVF 173


>gi|163854801|ref|YP_001629098.1| putative methyltransferase [Bordetella petrii DSM 12804]
 gi|163258529|emb|CAP40828.1| putative methyltransferase [Bordetella petrii]
          Length = 256

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 199 LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+ +    +   G  +L+L CG G+ S  +A    RV+A ++++  ++      A   ++
Sbjct: 34  LDQLAELAREHPGTRVLDLGCGGGHVSFHVAPCAARVVAYDLSQSMLDVVAEQAARRGLD 93

Query: 258 NVKIVRMSSKEFTQA 272
           N+   +  ++    A
Sbjct: 94  NLSTRQGKAERLPFA 108


>gi|197122519|ref|YP_002134470.1| methyltransferase [Anaeromyxobacter sp. K]
 gi|196172368|gb|ACG73341.1| methyltransferase [Anaeromyxobacter sp. K]
          Length = 179

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 16/94 (17%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKE 268
           GD+L+LY G G  +L  L+R   R + VE  +P+ E  R N       + V++VR    E
Sbjct: 44  GDVLDLYAGTGALALEALSRGCARAVCVEADRPTAELLRRNAETCGWADRVEVVRGRVPE 103

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
               +                 RF   FVDPP +
Sbjct: 104 ALARL--------------APGRFALAFVDPPYA 123


>gi|118472858|ref|YP_888817.1| methyltransferase small subunit [Mycobacterium smegmatis str. MC2
           155]
 gi|118174145|gb|ABK75041.1| methyltransferase small domain superfamily protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 183

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               G  L++ CG+G  S+ LAR    V  ++++  ++  A    A N V   +  R   
Sbjct: 40  FPTAGSALDVACGSGENSVWLARRGLHVWGIDVSPVAITQATQFAARNGV--AQRCRFDV 97

Query: 267 KEFTQAMR 274
            +    + 
Sbjct: 98  VDLDDGLP 105


>gi|46198867|ref|YP_004534.1| methyltransferase [Thermus thermophilus HB27]
 gi|55980897|ref|YP_144194.1| methyltransferase [Thermus thermophilus HB8]
 gi|46196490|gb|AAS80907.1| methyltransferase [Thermus thermophilus HB27]
 gi|55772310|dbj|BAD70751.1| methyltransferase [Thermus thermophilus HB8]
          Length = 185

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L      +G  L+L+ G+G   L  A      + VE    +V   + N+    +   ++V
Sbjct: 49  LRLRYPRRGRFLDLFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-GARVV 107

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            +  + F            L +      RF   F+ PP +
Sbjct: 108 ALPVEVF------------LPEAKAQGERFTVAFMAPPYA 135


>gi|145223482|ref|YP_001134160.1| methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
 gi|145215968|gb|ABP45372.1| Methyltransferase type 11 [Mycobacterium gilvum PYR-GCK]
          Length = 206

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +N  + E          G  L+L CG G  +L LA H   V+ V+I+  ++  A      
Sbjct: 23  VNRWLAEVAAPL---KPGRALDLGCGEGGDTLWLAEHGWEVVGVDISDTALRRAAEEADK 79

Query: 254 NHVNNVKIVRMSSKEFTQAMR 274
             +     V++   + + +  
Sbjct: 80  RGL--ADRVQLRQTDLSASFP 98


>gi|328953799|ref|YP_004371133.1| Methyltransferase type 11 [Desulfobacca acetoxidans DSM 11109]
 gi|328454123|gb|AEB09952.1| Methyltransferase type 11 [Desulfobacca acetoxidans DSM 11109]
          Length = 328

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 11/119 (9%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG---DL 213
           K ++  D D + + ++       Y +      Q           W     K I G    +
Sbjct: 66  KEQVIYDHDRIKDEMSRRWDPEKYDKYPGHIVQ----QGEEAAAWQELFGKLITGKGLRI 121

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA---ANHV-NNVKIVRMSSKE 268
           L+  CG G  S +LA     V  ++I+   V+ A+        + +   V      +++
Sbjct: 122 LDAGCGTGEISFLLAGMGHEVYGIDISPRMVDRAKEKAETKTESDIGRRVHFQLGDAEK 180


>gi|332852846|ref|ZP_08434428.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii 6013150]
 gi|332866693|ref|ZP_08437155.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii 6013113]
 gi|332728960|gb|EGJ60311.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii 6013150]
 gi|332734462|gb|EGJ65577.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           baumannii 6013113]
          Length = 237

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+    +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERAGGLASKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|194444397|ref|YP_002040282.1| SAM-dependent methyltransferase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|224493217|sp|B4T209|RLMI_SALNS RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|194403060|gb|ACF63282.1| protein YccW [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 403

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R   E            +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRERGE------------KFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|118445131|ref|YP_879219.1| SAM-dependent methyltransferase [Clostridium novyi NT]
 gi|118135587|gb|ABK62631.1| SAM-dependent methyltransferase [Clostridium novyi NT]
          Length = 247

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 31/148 (20%)

Query: 212 DLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
           ++++L  G G    ++A       +  +EI +  VE A  ++  N +   V+ +      
Sbjct: 49  NVIDLCSGTGIVPFIVAGKTEASNITGIEIQEEMVEMADRSVKFNKLEERVRFICED--- 105

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPHILYISCN 324
               ++      +L   D        + V+PP    +   V     M  A      + CN
Sbjct: 106 ----LKNIEALKKLPKAD-------VVTVNPPYKLANSGIVNPSDKMAIARHE---VCCN 151

Query: 325 PD-------SLCRDLSILSTTHTIERLA 345
            +       +L +D   +   H  +RLA
Sbjct: 152 LEDVIIACRTLLKDNKRMYMVHRPDRLA 179


>gi|301059346|ref|ZP_07200273.1| methyltransferase domain protein [delta proteobacterium NaphS2]
 gi|300446575|gb|EFK10413.1| methyltransferase domain protein [delta proteobacterium NaphS2]
          Length = 248

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 41/122 (33%), Gaps = 20/122 (16%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT- 270
             +++  G G F++ L R    V+ ++I++  V  AR N     +  +      +++   
Sbjct: 48  RAIDVGTGTGQFAIYLGRLGFHVIGIDISEKMVRKARDNAQEYGLR-IDFQTQDAEDLLF 106

Query: 271 ------------------QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                                +  +E+ R+            ++++P      D  +  +
Sbjct: 107 KDNTFDVIVSRNLLWTLPDPGKALKEWRRVLKPTGTLIVSDGMWMNPTWKRAHDVAIRTL 166

Query: 313 QA 314
           + 
Sbjct: 167 RG 168


>gi|297851504|ref|XP_002893633.1| hypothetical protein ARALYDRAFT_336158 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339475|gb|EFH69892.1| hypothetical protein ARALYDRAFT_336158 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 233

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ + G G  ++  A+    V+A++I    VE A  N     V N V  V     +   
Sbjct: 77  VIDCFSGVGGNTIQFAKVCSSVVAIDIDPVKVELAMNNAMVYGVANRVDFVIGDFIQLAP 136

Query: 272 AMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +++ +  F                 + +  PR G     +      P+I+
Sbjct: 137 SLKGDVVFLSPPWGGPMYRDVESYKLDMLQPRDGYSLFQIAQ-SITPNII 185


>gi|269795602|ref|YP_003315057.1| 16S rRNA m(2)G 1207 methyltransferase [Sanguibacter keddieii DSM
           10542]
 gi|269097787|gb|ACZ22223.1| 16S rRNA m(2)G 1207 methyltransferase [Sanguibacter keddieii DSM
           10542]
          Length = 217

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 25/127 (19%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +L  V        GD+L+L  G G  SL +A      RV AV++ + +++  R N A
Sbjct: 50  TQVLLRTVQD---PPSGDVLDLGAGWGPVSLTMAMQNPQARVWAVDVNERALDLVRRNAA 106

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
              + NV                        D      RF  ++ +PP R G D     +
Sbjct: 107 RLGLENVTACT-------------------PDDVPADVRFAQLWSNPPIRVGKDVLHSML 147

Query: 312 VQAYPHI 318
            +  P +
Sbjct: 148 DRWLPRL 154


>gi|256832896|ref|YP_003161623.1| methyltransferase [Jonesia denitrificans DSM 20603]
 gi|256686427|gb|ACV09320.1| methyltransferase [Jonesia denitrificans DSM 20603]
          Length = 191

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 209 IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
               +L+LY G+G   L   +R    VL VE  K +   AR N     +  V +    ++
Sbjct: 43  RDTKVLDLYAGSGALGLEAASRGAREVLLVEAHKAAAGIARDNATKLGLAGVSVRCDRAE 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                                      +F+DPP    ++    ++ A
Sbjct: 103 HVAGLPTSPPW--------------DVVFLDPPYDLSNERLHDVLAA 135


>gi|195152013|ref|XP_002016933.1| GL21793 [Drosophila persimilis]
 gi|194111990|gb|EDW34033.1| GL21793 [Drosophila persimilis]
          Length = 479

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 21/124 (16%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           R    S+               +A        +L+ +CG G  ++  A    RV+AV+I 
Sbjct: 277 RLDRESWFSVTPEKIAKQTARRVACDV-----ILDAFCGCGGNAIQFALTCGRVIAVDID 331

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +  A++N     V + ++ +     +F  + R                R   +F  P
Sbjct: 332 AEKLAMAKHNATIYGVADKIEFIHADFLQFAPSTR---------------LRPDVVFFSP 376

Query: 300 PRSG 303
           P  G
Sbjct: 377 PWGG 380


>gi|320102229|ref|YP_004177820.1| type 12 methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319749511|gb|ADV61271.1| Methyltransferase type 12 [Isosphaera pallida ATCC 43644]
          Length = 314

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            G+   +LE + A  +     + +L CG G     L   F RV+A++ A   +EA+R  +
Sbjct: 49  PGVTNPLLELLEARPQRRDETVADLGCGTGPLLPWLLERFGRVIALDFAPGMIEASRQRL 108

Query: 252 AANHVNNVKIVRMSSK---EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA- 307
                  V+ ++ S +   +F   +     FN +   D        + +   R  L    
Sbjct: 109 GP-EARRVEFLQRSMEQLDDFEGTLDVAVAFNSVVMPDTRVIDRTLVAI---RRALKPGG 164

Query: 308 -TVGMVQAYPHILY 320
               ++ A   ILY
Sbjct: 165 VFAAILPAMDAILY 178


>gi|289450522|ref|YP_003475311.1| hypothetical protein HMPREF0868_1010 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289185069|gb|ADC91494.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 295

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRV----LAVEIAKPSVEAARYNIAANHVN 257
            +  T      + +L  G+G   L+ A    +V    +AVE           N   N   
Sbjct: 48  AINTTASKNLKVADLCAGSGVIGLLYAARCRQVPVLTVAVEHDPEMFSVLERNACLNARY 107

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N+  V  +  E  ++ + +++         HS  F+ + V+PP
Sbjct: 108 NILPVHANLAEDVESWQVDQKHKVTPGDFKHS--FQVVLVNPP 148


>gi|326571411|gb|EGE21426.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis BC7]
 gi|326576608|gb|EGE26515.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           101P30B1]
          Length = 310

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W LAA +     +++  CG+G   +  L     +VLAV+I   +V A R N A N V+
Sbjct: 153 LDW-LAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVD 211

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +              +  E + +R ++  +       I    P  G        ++    
Sbjct: 212 DR---------LLAFLPAEFDAHRTQNPQLADVITANILA-KPLIGFAPLFHDSLKTGGL 261

Query: 318 IL 319
           I+
Sbjct: 262 IV 263


>gi|159149040|dbj|BAF92588.1| methyltransferase [Streptomyces pactum]
 gi|212379246|gb|ACJ24862.1| HemK family methyltransferase [Streptomyces pactum]
          Length = 358

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L  ++AA + ++   L+L CG G   L  AR+   V++V++      AA  N   N +  
Sbjct: 140 LSRLVAARRDVR-TALDLGCGTGILGLSAARNGADVVSVDVNPECTAAATVNAHINGLG- 197

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
               R+++ E             +  +D+   RF  +  +PP   L   ++G +  
Sbjct: 198 ---ERLTAVE-----------GDIMSLDL-DRRFDLVISNPPCLPLRRGSLGWLAG 238


>gi|167036166|ref|YP_001671397.1| hypothetical protein PputGB1_5177 [Pseudomonas putida GB-1]
 gi|166862654|gb|ABZ01062.1| conserved hypothetical protein [Pseudomonas putida GB-1]
          Length = 398

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
               A       +L+L+   G + +   A     V  V+ +  +++    N A N +   
Sbjct: 212 RARLAPYVKGKRVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +     E  + ++   E            RF  I  DPP                  
Sbjct: 272 LTCIEGDVFEALRELKAAEE------------RFDVIIADPPAFIKRKKDLKNGEAAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + M+     ++  SC
Sbjct: 320 LNEQAMRMLNKDGILVSASC 339


>gi|124485543|ref|YP_001030159.1| hypothetical protein Mlab_0720 [Methanocorpusculum labreanum Z]
 gi|124363084|gb|ABN06892.1| Methyltransferase type 11 [Methanocorpusculum labreanum Z]
          Length = 234

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G   +++E+  G G  +L LA+    V  ++++   V+ A+ N     +         ++
Sbjct: 43  GKHLNVIEVGTGPGILALALAKMGHTVTGIDLSPEMVKKAQANAEKLGIT-AAFREGDAE 101

Query: 268 EF 269
             
Sbjct: 102 NL 103


>gi|116621945|ref|YP_824101.1| type 12 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225107|gb|ABJ83816.1| Methyltransferase type 12 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 236

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 52/143 (36%), Gaps = 12/143 (8%)

Query: 180 YRQIENSFTQPNAGI---NVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDR 233
           +   +  F Q  +G       +L  +    +G       +LE+ CG G  +   A  F  
Sbjct: 34  HEWSDEEFFQ--SGQITLEEEILNDLQNICQGKDPREMKVLEIGCGAGRVTRAFAGFFGE 91

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V AV+I++  V  AR   A     N  + + + ++ +   R  R    L       + F 
Sbjct: 92  VYAVDISREMVRQARE--AVAGFPNTHVFQNNGRDLSVVNRGWRSRLGLGPRLEVDFAFS 149

Query: 294 TIFVD--PPRSGLDDATVGMVQA 314
            I     P R  +++    + + 
Sbjct: 150 IIVFQHIPSRKIIENYVREVHRM 172


>gi|148550203|ref|YP_001270305.1| hypothetical protein Pput_5001 [Pseudomonas putida F1]
 gi|148514261|gb|ABQ81121.1| SAM-dependent methyltransferase [Pseudomonas putida F1]
 gi|313501103|gb|ADR62469.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 398

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
               A       +L+L+   G + +   A     V  V+ +  +++    N A N +   
Sbjct: 212 RARLAPYVKGKRVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +     E  + ++   E            RF  I  DPP                  
Sbjct: 272 LTCIEGDVFEALRELKAAEE------------RFDVIIADPPAFIKRKKDLKNGEAAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + M+     ++  SC
Sbjct: 320 LNEQAMRMLNKDGILVSASC 339


>gi|327460377|gb|EGF06714.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           SK1057]
          Length = 276

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 41/200 (20%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           +L  +  +E   +L+        Q QL+       I    D++   L V  R LI R   
Sbjct: 42  KLRTEVSQEDRKQLKAI------QEQLLAHKPAQYIIGSSDFLGLSLKVDERVLIPRPE- 94

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKP 242
                        ++E +L+        +L++  G+G  +L LA  R   ++ A +++  
Sbjct: 95  ----------TEELVELILSENPESSLSVLDIGTGSGAIALALANSRPDWKITASDLSND 144

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-- 300
           ++  A  N    +++ +  V+    E                    S  F  I  +PP  
Sbjct: 145 ALALAAENAQFCNLS-LTFVQSDCFEAI------------------SGSFDIIVSNPPYI 185

Query: 301 -RSGLDDATVGMVQAYPHIL 319
             +  D+  + ++ + PH+ 
Sbjct: 186 SEADKDEVGLNVLTSEPHMA 205


>gi|255532814|ref|YP_003093186.1| hypothetical protein Phep_2926 [Pedobacter heparinus DSM 2366]
 gi|255345798|gb|ACU05124.1| hypothetical protein Phep_2926 [Pedobacter heparinus DSM 2366]
          Length = 394

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
              A   +  +L++L  G G  S   AR    V   EI     E A +N     + N++ 
Sbjct: 81  AYKAGLAVGDNLIDLTGGFGVDSCYFARVLKTVTHCEINTELSEIAAHNAQVLGLTNIQF 140

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY- 320
           + +    F +                    + +I++DP R         +    P+++  
Sbjct: 141 LAIDGIAFLKT---------------SGKPYDSIYIDPARRSTAGKVFMLKDCTPNVVEH 185

Query: 321 ----ISC 323
               +SC
Sbjct: 186 LDLLLSC 192


>gi|300361859|ref|ZP_07058036.1| ribosomal protein L11 methyltransferase [Lactobacillus gasseri
           JV-V03]
 gi|300354478|gb|EFJ70349.1| ribosomal protein L11 methyltransferase [Lactobacillus gasseri
           JV-V03]
          Length = 315

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              ++   +         +L++  G+G  ++  ++    +VL  +I+  +V AA+ NIA 
Sbjct: 163 TTQLVLLAMERALVKPMSVLDVGTGSGILAIAASKLGASQVLGTDISDEAVTAAKENIAL 222

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           N+++N+ + + +  +           N L DI + 
Sbjct: 223 NNIDNIDVRKANLLKDIDEKYDLIVANILADILLE 257


>gi|225861865|ref|YP_002743374.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229610|ref|ZP_06963291.1| methyltransferase small domain superfamily protein [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254014|ref|ZP_06977600.1| methyltransferase small domain superfamily protein [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298501544|ref|YP_003723484.1| S-adenosylmethionine-dependent methyltransferase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|225727405|gb|ACO23256.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298237139|gb|ADI68270.1| possible S-adenosylmethionine-dependent methyltransferase
           [Streptococcus pneumoniae TCH8431/19A]
          Length = 195

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 196 VHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
            +++   +     I    ++L+   G G  +L LA+    V  V+I++  +E AR     
Sbjct: 21  ANLVCQAVEKQIDILSDKEILDFGGGTGLLALPLAKQAKSVTLVDISEKMLEQARLKAEQ 80

Query: 254 NHVNNVKIVRMS-----SKEFTQAMRREREFNRLKDIDIH 288
             + N++ +         ++    +   R  + + D+D  
Sbjct: 81  QAIKNIQFLEQDLPKNPLEKEFDCLAVSRVLHHMPDLDAA 120


>gi|221507944|gb|EEE33531.1| conserved hypothetical protein [Toxoplasma gondii VEG]
          Length = 754

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 120 TLIYHRLLDDA-WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           T +  R L+ + W+  A RL+      +  I    R ++ +I      +   +      +
Sbjct: 396 THVDGRRLEPSVWKHLAKRLKAETIGVQAPISGPKRQSQVQIIYGASGL---VNHQENGV 452

Query: 179 IYRQIENS--FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL-----ARHF 231
           +Y        F   N       +  + A+       +++L+CG G FSL       A   
Sbjct: 453 VYHFDVTKCMFASGNGTERARFVNLIRASKSAEPETVVDLFCGIGYFSLAALTCAGADKL 512

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVN 257
             + A +  + +++     +A NHV+
Sbjct: 513 KHLYACDWNQDALQFFEAALALNHVD 538


>gi|221483474|gb|EEE21793.1| conserved hypothetical protein [Toxoplasma gondii GT1]
          Length = 754

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 120 TLIYHRLLDDA-WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           T +  R L+ + W+  A RL+      +  I    R ++ +I      +   +      +
Sbjct: 396 THVDGRRLEPSVWKHLAKRLKAETIGVQAPISGPKRQSQVQIIYGASGL---VNHQENGV 452

Query: 179 IYRQIENS--FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL-----ARHF 231
           +Y        F   N       +  + A+       +++L+CG G FSL       A   
Sbjct: 453 VYHFDVTKCMFASGNGTERARFVNLIRASKSAEPETVVDLFCGIGYFSLAALTCAGADKL 512

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVN 257
             + A +  + +++     +A NHV+
Sbjct: 513 KHLYACDWNQDALQFFEAALALNHVD 538


>gi|6634778|gb|AAF19758.1|AC009917_17 Contains similarity to gi|629253 lmbW protein from Streptomyces
           lincolnensis [Arabidopsis thaliana]
 gi|332193121|gb|AEE31242.1| S-adenosyl-L-methionine-dependent methyltransferase
           domain-containing protein [Arabidopsis thaliana]
          Length = 455

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ + G G  ++  A+    V+A++I    VE A  N     V N V  V     +   
Sbjct: 299 VIDCFSGVGGNTIQFAKVCSSVVAIDIDPVKVELAMNNAMVYGVANRVDFVIGDFIQLAP 358

Query: 272 AMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +++ +  F            +    + +  PR G     +      P+I+
Sbjct: 359 SLKGDVVFLSPPWGGPMYRDFESYNLDMLQPRDGYSLFQIAQ-SITPNII 407


>gi|30691953|ref|NP_174343.2| unknown protein [Arabidopsis thaliana]
          Length = 391

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ + G G  ++  A+    V+A++I    VE A  N     V N V  V     +   
Sbjct: 235 VIDCFSGVGGNTIQFAKVCSSVVAIDIDPVKVELAMNNAMVYGVANRVDFVIGDFIQLAP 294

Query: 272 AMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +++ +  F            +    + +  PR G     +      P+I+
Sbjct: 295 SLKGDVVFLSPPWGGPMYRDFESYNLDMLQPRDGYSLFQIAQ-SITPNII 343


>gi|20090504|ref|NP_616579.1| methionine-10+ related protein [Methanosarcina acetivorans C2A]
 gi|19915528|gb|AAM05059.1| methionine-10+ related protein [Methanosarcina acetivorans C2A]
          Length = 282

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 11/103 (10%)

Query: 169 ERLTVAGRTLIYRQ-IENSFTQPNAGINVHML-EWVLAATKGIQGD-LLELYCGNGNFSL 225
           E L        YR  I   F       N  +  E    A+K + G+ +L  + G G F L
Sbjct: 90  ETLH-RENGYTYRMDIRKVFF------NPRLYWERARVASKVLPGESVLIPFAGVGPFVL 142

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
             A     V A+EI   +    + N+  N +   V +++  ++
Sbjct: 143 PSAGKGAAVCAIEINPDACACLKENVRLNRLEGQVTVIQGDAE 185


>gi|70726878|ref|YP_253792.1| hypothetical protein SH1877 [Staphylococcus haemolyticus JCSC1435]
 gi|68447602|dbj|BAE05186.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 390

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 14/114 (12%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
              +   L      + D+L L+   G FS+V A++     +V++A  S      N   N 
Sbjct: 201 QKEVRKKLRDHFAKEKDILNLFSYTGAFSVVAAQNAKSTTSVDLANRSRSLTEENFGLNG 260

Query: 256 VN--NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           ++  +  I  M + +F     R            H   F TI +DPP    +  
Sbjct: 261 IDPKSQYIYVMDTFDFYNYAAR------------HGKVFDTIVIDPPSFARNKK 302


>gi|320449784|ref|YP_004201880.1| ribosomal RNA small subunit methyltransferase C [Thermus
           scotoductus SA-01]
 gi|320149953|gb|ADW21331.1| ribosomal RNA small subunit methyltransferase C [Thermus
           scotoductus SA-01]
          Length = 393

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 8/132 (6%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNGNFSLVLARHF 231
            T  +  +   F+         +L   L    G +G     +L+L  G G  +L LAR  
Sbjct: 194 ETFTFFHLPGVFSAGKVDKASVLLLEALVGEVGREGIRGRRILDLGAGYGALTLPLARLG 253

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ---AMRREREFNRLKDIDIH 288
             V A+E    SV +   ++  N +   +++     E           R           
Sbjct: 254 GEVTALEDDLVSVLSLERSLKENRLA-ARVLHSDVDEALAEGGVSWGSRPAQVQAPGLTE 312

Query: 289 SYRFKTIFVDPP 300
              F  I  +PP
Sbjct: 313 EEAFDIIVTNPP 324


>gi|161503842|ref|YP_001570954.1| hypothetical protein SARI_01930 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|224493231|sp|A9MHS2|RLMI_SALAR RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|160865189|gb|ABX21812.1| hypothetical protein SARI_01930 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 403

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKE 268
            +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++    + VR    +
Sbjct: 230 RVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLDLSKAEFVRDDVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             +A R   E            +F  I +DPP+   +    +G  + Y  I
Sbjct: 290 LLRAYRERGE------------KFDVIIMDPPKFVENKSQLMGACRGYKDI 328


>gi|145346642|ref|XP_001417794.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578022|gb|ABO96087.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 410

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           + +   G G FS+  A+   R  A ++     +  + N   N V N VK   M ++ F +
Sbjct: 239 ICDATSGVGPFSVPAAQKGIRCYASDLNPDCAKYLKINAKENRVKNLVKCYNMDARAFIK 298

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           A+    E         +   F  +  + P SG++
Sbjct: 299 ALLAAPE---------NRATFDHLVTNLPASGIE 323


>gi|85374372|ref|YP_458434.1| methlytransferase, UbiE/COQ5 family protein [Erythrobacter
           litoralis HTCC2594]
 gi|84787455|gb|ABC63637.1| methlytransferase, UbiE/COQ5 family protein [Erythrobacter
           litoralis HTCC2594]
          Length = 274

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 27/172 (15%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LA 236
            YR+ + SF    +G+   +L    A         L++ CG G  SL LAR       + 
Sbjct: 18  HYRRTDRSF----SGLTDRLLGAASARRI---TRALDVGCGAGELSLALARGHPHAQFIG 70

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +++++  V  AR      H+ N +     +        R R+ +   D+ +   R   +F
Sbjct: 71  LDVSEALVAVARQ--RGEHLVNAQFEVGDA-------SRWRDADFHPDLIVS--RHGVMF 119

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD 348
            D P +        +V     +++ SC      RDL        + R+   D
Sbjct: 120 FDDPAAAFAH-LRSIVTDDGRLVF-SC-----FRDLQENPWASDVARMVPVD 164


>gi|20092700|ref|NP_618775.1| ubiE/COQ5 methyltransferase [Methanosarcina acetivorans C2A]
 gi|19917988|gb|AAM07255.1| ubiE/COQ5 methyltransferase [Methanosarcina acetivorans C2A]
          Length = 251

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +L +       +L++  G G  SL+LA     V+ +++++  +  A        ++ +  
Sbjct: 39  LLRSKLDDAEKILDIGSGTGFLSLMLADMGYEVVGIDLSEEMIARASAKAKERGLS-IDF 97

Query: 262 VRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIF 296
            +  +++         A+        L   DI    +  + 
Sbjct: 98  HQDDAEQLGFENNSFDAIVNRAVLWTLPHPDIAVREWMRVL 138


>gi|258508625|ref|YP_003171376.1| methyltransferase [Lactobacillus rhamnosus GG]
 gi|257148552|emb|CAR87525.1| Methyltransferase [Lactobacillus rhamnosus GG]
          Length = 247

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 15/106 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +++L  GNG   L LAR  D RV  VE+     + AR ++A N + NV +  
Sbjct: 42  AQIKRHSRVVDLAAGNGAVGLFLARKTDNRVTMVELQPRLADMARRSVALNALANVDVHE 101

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
               + T+ + ++                  +  +PP   +   ++
Sbjct: 102 GDLADTTKFVAKD--------------SVDVVTCNPPYFKISARSI 133


>gi|239503763|ref|ZP_04663073.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter baumannii
           AB900]
          Length = 237

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERAGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  +E  Q    + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPIEELAQEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|228979485|ref|ZP_04139815.1| Methyltransferase type 11 [Bacillus thuringiensis Bt407]
 gi|228780182|gb|EEM28419.1| Methyltransferase type 11 [Bacillus thuringiensis Bt407]
          Length = 205

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 190 PNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            N+ I        H+++ V +        LL++  G G+ + +LA  F+ V+A+++ +  
Sbjct: 19  VNSKIHAKGQDLQHVVQQVESRHNN---RLLDVATGGGHVANMLAPMFEEVVALDLTEQM 75

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +E A+  I  N   NV  V  ++++   A
Sbjct: 76  LEKAKSFIKQNGHENVSFVAGNAEDLPFA 104


>gi|199597112|ref|ZP_03210544.1| Predicted O-methyltransferase [Lactobacillus rhamnosus HN001]
 gi|229552432|ref|ZP_04441157.1| methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|199591916|gb|EDY99990.1| Predicted O-methyltransferase [Lactobacillus rhamnosus HN001]
 gi|229314169|gb|EEN80142.1| methyltransferase [Lactobacillus rhamnosus LMS2-1]
 gi|259649931|dbj|BAI42093.1| putative methyltransferase [Lactobacillus rhamnosus GG]
          Length = 244

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 15/106 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +++L  GNG   L LAR  D RV  VE+     + AR ++A N + NV +  
Sbjct: 39  AQIKRHSRVVDLAAGNGAVGLFLARKTDNRVTMVELQPRLADMARRSVALNALANVDVHE 98

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
               + T+ + ++                  +  +PP   +   ++
Sbjct: 99  GDLADTTKFVAKD--------------SVDVVTCNPPYFKISARSI 130


>gi|104779566|ref|YP_606064.1| hypothetical protein PSEEN0284 [Pseudomonas entomophila L48]
 gi|95108553|emb|CAK13247.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 398

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
               A       +L+L+   G + +   A     V  V+ +  +++    N A N +   
Sbjct: 212 RARLAPYVKGKRVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +     E  + ++   E            RF  I  DPP                  
Sbjct: 272 LTCIEGDVFEALRELKAAEE------------RFDVIIADPPAFIKRKKDLKNGEAAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + M+     ++  SC
Sbjct: 320 LNEQAMRMLNKDGILVSASC 339


>gi|113477868|ref|YP_723929.1| Mg-protoporphyrin IX methyl transferase [Trichodesmium erythraeum
           IMS101]
 gi|110168916|gb|ABG53456.1| magnesium protoporphyrin O-methyltransferase [Trichodesmium
           erythraeum IMS101]
          Length = 228

 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA--ANH 255
           +L W+ A        + +  CG G+ S+ LA+    +   +I++  V  A         +
Sbjct: 49  VLNWLQADDNLQGLSICDAGCGVGSLSIPLAKSGAVIYGSDISEKMVLEAYQRAKSSLIN 108

Query: 256 VNNVKIVRMSSK 267
           ++N+  V    +
Sbjct: 109 IDNINFVAQDLE 120


>gi|284051466|ref|ZP_06381676.1| methyltransferase type 11 [Arthrospira platensis str. Paraca]
          Length = 442

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 213 LLELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+  CG+G    +L LA    +++ ++I++ SVEA+R  +  + + N +   M  +E 
Sbjct: 62  ILDAGCGSGYKALALALANPGAKIVGIDISENSVEASRDRLKYHGIENAEFHAMYIEEL 120


>gi|110803474|ref|YP_697596.1| hypothetical protein CPR_0266 [Clostridium perfringens SM101]
 gi|110683975|gb|ABG87345.1| conserved hypothetical protein [Clostridium perfringens SM101]
          Length = 249

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 33/160 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           A    +  +L+L  G G    ++   ++   V+ +EI +   E A  +   N V + V  
Sbjct: 42  ANVNRKHSVLDLCTGTGIIPFIIYGKKNPKEVVGIEIQEEFAEMANRSAKINDVQDKVSF 101

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPH 317
           +    K+              K+++    +F  + V+PP    +   +     +  A   
Sbjct: 102 ICGDLKD--------------KELNRSMPKFDVVTVNPPYKLNNAGIINSEDKLAIARHE 147

Query: 318 ILYISCN-----PDS--LCRDLSILSTTHTIERLALFDQF 350
           I+   CN       S    +D   L   H  ERLA  D F
Sbjct: 148 IM---CNLEDVIAASRRFLKDNGRLYMVHRPERLA--DIF 182


>gi|108743442|dbj|BAE95545.1| putative methyltransferase-UbiE family [Streptomyces kanamyceticus]
          Length = 269

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G  +  LA       V  V+ A   ++ AR   A   ++NV+       + 
Sbjct: 41  RVLDIGCGPGTITADLAALVPEGHVTGVDHAPGILDQARATAAERGLDNVEFAVADVHDL 100


>gi|26991803|ref|NP_747228.1| hypothetical protein PP_5127 [Pseudomonas putida KT2440]
 gi|24986915|gb|AAN70692.1|AE016712_10 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 398

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 29/140 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
               A       +L+L+   G + +   A     V  V+ +  +++    N A N +   
Sbjct: 212 RARLAPYVKGKRVLDLFSYIGGWGVQAGAFGASEVFCVDASGFALDGVERNAALNGISEK 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG--------------- 303
           +  +     E  + ++   E            RF  I  DPP                  
Sbjct: 272 LTCIEGDVFEALRELKAAEE------------RFDVIIADPPAFIKRKKDLKNGEAAYRR 319

Query: 304 LDDATVGMVQAYPHILYISC 323
           L++  + M+     ++  SC
Sbjct: 320 LNEQAMRMLNKDGILVSASC 339


>gi|45358123|ref|NP_987680.1| SAM-binding motif-containing protein [Methanococcus maripaludis S2]
 gi|44920880|emb|CAF30116.1| SAM (and some other nucleotide) binding motif:Family of unknown
           function Met10 [Methanococcus maripaludis S2]
          Length = 253

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++++ G G F++ +A++     + A+E+   S      NI  N ++NV  +   +++F+
Sbjct: 103 VVDMFAGIGYFTIPIAKYSNPKTIYALELNPDSYYYLSENIKLNKLDNVVPILGDNRDFS 162

Query: 271 QAMRRER 277
                +R
Sbjct: 163 LKNVADR 169


>gi|329118364|ref|ZP_08247073.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465588|gb|EGF11864.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 242

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 20/156 (12%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYN 250
             IN   L+++ A        +L++ CG G  +  +A R    V  +++A+ S++ A  +
Sbjct: 36  HDINPFRLDYIDAKADLAGKTVLDVGCGGGILAESMAWRGAAAVTGIDLAEKSLQTAEAH 95

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                V+NV+   +S ++         +     ++  H     ++               
Sbjct: 96  ARMGGVDNVRYRCVSVEDLAAENPHGYDVVTCMEMMEHVPDPTSVI----------RACA 145

Query: 311 MVQAYPHILYISCNPDSLCRDLS-----ILSTTHTI 341
            +     +++ S    ++ R+       IL   + +
Sbjct: 146 KLAKPDGMVFFS----TINRNAKSYLHAILGAEYVL 177


>gi|300309728|ref|YP_003773820.1| 50S ribosomal protein L11 methyltransferase [Herbaspirillum
           seropedicae SmR1]
 gi|300072513|gb|ADJ61912.1| 50S ribosomal subunit protein L11 methyltransferase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +EW L A     G LL+  CG+G  +LV A+    +V+ V+I   ++EAA +N   NH  
Sbjct: 157 MEW-LEANATEAGTLLDYGCGSGILALVAAKIGVPQVIGVDIDPQALEAAHHNTERNHCT 215

Query: 258 NVKIVRMSSKEFTQAMRREREFN 280
               +    + F QA      F+
Sbjct: 216 ATYYL---PEPFAQAHPEGERFD 235


>gi|295677719|ref|YP_003606243.1| ribosomal protein L11 methyltransferase [Burkholderia sp. CCGE1002]
 gi|295437562|gb|ADG16732.1| ribosomal protein L11 methyltransferase [Burkholderia sp. CCGE1002]
          Length = 300

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR+N   NH 
Sbjct: 156 MEWIEQSIKPGQS-VLDYGCGSGILAI-LAKKCGADPVIGIDIDPQAVESARHNSERNHA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|183984068|ref|YP_001852359.1| modification methylase HemK [Mycobacterium marinum M]
 gi|183177394|gb|ACC42504.1| modification methylase HemK [Mycobacterium marinum M]
          Length = 282

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH- 230
           TV    +  +     F          +LEW  A        +++L  G+G  ++ LA   
Sbjct: 76  TVQFGPVELQVGPGVF--VPRPETEAVLEWAGAQQLSEYPVIVDLCTGSGALAIALADRW 133

Query: 231 -FDRVLAVEIAKPSVEAARYN 250
              R+L V+ +  ++E A+ N
Sbjct: 134 PAARILGVDDSGAALEYAQRN 154


>gi|134045649|ref|YP_001097135.1| type 11 methyltransferase [Methanococcus maripaludis C5]
 gi|150403694|ref|YP_001330988.1| type 11 methyltransferase [Methanococcus maripaludis C7]
 gi|132663274|gb|ABO34920.1| Methyltransferase type 11 [Methanococcus maripaludis C5]
 gi|150034724|gb|ABR66837.1| Methyltransferase type 11 [Methanococcus maripaludis C7]
          Length = 285

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 179 IYRQIE-NSFTQ------PNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH 230
           IY  +   SF Q      P   +    +E   +    + G ++L++ CG G+ ++ +A+ 
Sbjct: 100 IYSILPYTSFDQIKEAKFPQTSMEPRKMEAFNSLLPSLNGKNILDVGCGIGSLAINMAKA 159

Query: 231 FDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
                +  V+I   S+E  + N     V N      S+ E 
Sbjct: 160 KPESIIYGVDIIDGSIEQCKLNAKIEGVTNTHFAVASAYEL 200


>gi|313112653|ref|ZP_07798311.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310625076|gb|EFQ08373.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 408

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 14/124 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV-EIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G+F+L  A      +   +I+  ++  A+ N   N + 
Sbjct: 224 YNRRAVARLAAGHTVLDCFTHTGSFALNAAAGGAARVTAADISAEAIAMAQRNAQRNGLT 283

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYP 316
           N+  +   + E    + RE             + +  I +DPP       TV   ++ Y 
Sbjct: 284 NMDFLCEDTFELLPRLERE------------GHPYDFIILDPPAFTKARRTVENAMRGYK 331

Query: 317 HILY 320
            I Y
Sbjct: 332 EINY 335


>gi|262068282|ref|ZP_06027894.1| ribosomal protein L11 methyltransferase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378020|gb|EFE85538.1| ribosomal protein L11 methyltransferase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 382

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 46/109 (42%), Gaps = 19/109 (17%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNI 251
              ++E  +   + I+  ++L++  G+G  S+ +A       V  V+I + +++ A  N 
Sbjct: 180 TEILVEQCIQLMREIEEPNILDIGSGSGAISIAIANELKSSSVTGVDINEEAIKLANENK 239

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             N V N+  ++               F +L +     +++  I  +PP
Sbjct: 240 ILNKVENINFMKSD------------LFEKLDE----DFKYDLIVSNPP 272


>gi|255659182|ref|ZP_05404591.1| putative SAM-dependent methyltransferase [Mitsuokella multacida DSM
           20544]
 gi|260848633|gb|EEX68640.1| putative SAM-dependent methyltransferase [Mitsuokella multacida DSM
           20544]
          Length = 257

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 12/95 (12%)

Query: 186 SFTQ--------PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
           +F+Q        PN      +L+         +  +L++  G G F L+LA     V+ V
Sbjct: 37  AFSQLRLQEAAGPNGEAWRTLLQ---EHLPDRRLSILDIGTGAGFFPLLLAPLGHEVIGV 93

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++  V+ AR N  A  V   +  +M ++    A
Sbjct: 94  DLSEKMVQEARKNCLAAGVP-ARFRKMDAQALDFA 127


>gi|254387522|ref|ZP_05002761.1| methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294815091|ref|ZP_06773734.1| Methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|326443453|ref|ZP_08218187.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Streptomyces clavuligerus ATCC 27064]
 gi|197701248|gb|EDY47060.1| methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294327690|gb|EFG09333.1| Methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 281

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 34/136 (25%)

Query: 181 RQIENSFT-----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLV 226
                +F      Q   G+         ++ W + A +    ++  +++L  G+G  +L 
Sbjct: 69  HITGRAFFRYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPLIVDLCTGSGAIALA 128

Query: 227 LARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           +A+     RV AVE+++ +++ AR N      + V +   ++               L  
Sbjct: 129 MAQEVPRSRVHAVELSENALDWARKNAEG---SRVTVHHGNA---------------LTA 170

Query: 285 IDIHSYRFKTIFVDPP 300
           +     +   +  +PP
Sbjct: 171 LPELDGQVDLVISNPP 186


>gi|163789936|ref|ZP_02184372.1| Putative methyltransferase [Carnobacterium sp. AT7]
 gi|159874876|gb|EDP68944.1| Putative methyltransferase [Carnobacterium sp. AT7]
          Length = 250

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
            L  D   ++L     ++I      SF      ++  +L       K  +  +++L  GN
Sbjct: 4   WLKGDERMDQLLSHNLSIIQSPSVFSF-----SLDAVLLADFAQPAKHDRAKVVDLCAGN 58

Query: 221 GNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQAMRRERE 278
           G   L+L++  +  ++ +EI +  V+ A   I  N +   V IV     + ++ ++++  
Sbjct: 59  GVVGLLLSQKTNSPIIGIEIQERLVDMANRTIQVNGLEKQVSIVHGDLSDASKWIKKDT- 117

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                          T+  +PP   + + ++ 
Sbjct: 118 -------------VDTLTCNPPYFAVGEKSIK 136


>gi|108758395|ref|YP_631481.1| hypothetical protein MXAN_3282 [Myxococcus xanthus DK 1622]
 gi|108462275|gb|ABF87460.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 403

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 35/181 (19%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIE-----NSFT--QPNAGINVHMLEWVLAATKGIQG 211
           K+    +   E + +  R   +           F   Q     N +++  +     G   
Sbjct: 179 KMLFGHE-APELIPIRERGATFLVDAWKGQKTGFFLDQ---RENRYLIRRL-----GKGR 229

Query: 212 DLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK--IVRMSSKE 268
           D+L  +  +G FS+  A    + V +V+    ++  AR N   N +   K   +     +
Sbjct: 230 DVLNCFSFSGGFSVNAALGGANSVFSVDQDPDAIALARENFTRNGIAAEKHDFLAADVFK 289

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328
             Q+ + E               F  I +DPP        V          Y S N  +L
Sbjct: 290 IIQSFKDE------------GRTFDLIILDPPAFAKSQRAVQAAIDG----YASLNRQAL 333

Query: 329 C 329
            
Sbjct: 334 A 334


>gi|126435511|ref|YP_001071202.1| methyltransferase type 12 [Mycobacterium sp. JLS]
 gi|126235311|gb|ABN98711.1| Methyltransferase type 12 [Mycobacterium sp. JLS]
          Length = 188

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 2/111 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
              +      G  L++ CG G  S+ LA     V  ++I+  +VE A        V    
Sbjct: 34  TAHSDAFPTAGSALDVACGQGRVSIWLAERGLDVRGLDISSVAVEQAAATARERGV--AD 91

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             R    +    +      + +        R     V   R G   A   +
Sbjct: 92  RCRFDVVDLDCGLPPGPPVDVVVCHLFRDERLDRAMVARLRPGGLLAVAAL 142


>gi|313837662|gb|EFS75376.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL037PA2]
 gi|314927457|gb|EFS91288.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL044PA1]
 gi|314972602|gb|EFT16699.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL037PA3]
 gi|328907543|gb|EGG27309.1| putative methylase [Propionibacterium sp. P08]
          Length = 291

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 73/229 (31%), Gaps = 52/229 (22%)

Query: 80  SLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR 139
           SLL+     ++ A     P   A++   + L  Q  Q I     H   +D + E   R R
Sbjct: 7   SLLLARATCQLAAGGIETPAADARMLLCEALGIQPSQLIRVASVHADDEDRFNEMVDRRR 66

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
               A+     ++G A                    R L        F      +   ++
Sbjct: 67  AGEPAQF----IVGHA------------------WFRGLRVEVGPGVFI---PRLETELV 101

Query: 200 -EWVLAA-----TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251
            E  +              +++L  G G  +L +A      RV AVE+ + ++  AR N+
Sbjct: 102 AEQAVQEAQRLVMASACPSVVDLCTGTGAIALAVASEVPGSRVSAVEMDEAALTWARRNL 161

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +    V+I+   +       RR                F  +  +PP
Sbjct: 162 CDSG---VEILAGDALRVPDDGRR----------------FDVVVTNPP 191


>gi|198453432|ref|XP_001359198.2| GA16116 [Drosophila pseudoobscura pseudoobscura]
 gi|198132356|gb|EAL28342.2| GA16116 [Drosophila pseudoobscura pseudoobscura]
          Length = 479

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 21/124 (16%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           R    S+               +A        +L+ +CG G  ++  A    RV+AV+I 
Sbjct: 277 RLDRESWFSVTPEKIAKQTARRVACDV-----ILDAFCGCGGNAIQFALTCGRVIAVDID 331

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +  A++N     V + ++ +     +F  + R                R   +F  P
Sbjct: 332 AEKLAMAKHNATIYGVADKIEFIHADFLQFAPSTR---------------LRPDVVFFSP 376

Query: 300 PRSG 303
           P  G
Sbjct: 377 PWGG 380


>gi|16945719|dbj|BAB72050.1| AknG [Streptomyces galilaeus]
          Length = 286

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 45/171 (26%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPS 243
           F      +   ++E            +L++ CG G      A       RV+ +++A+  
Sbjct: 28  FF---TPMGRRLVERAA---PAAGARVLDVGCGRGACVFPAAERVGPEGRVVGIDVAEAM 81

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A    A      V++  M  +                  D   + F  +        
Sbjct: 82  IEEATKEAALRDAAMVELRVMDGEH----------------PDFAPHSFDVVLGSYS--- 122

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF---DQFP 351
                         ++++   P +L R   +LS    +   +     D FP
Sbjct: 123 --------------VIFLPDAPTALARYAPLLSPGGRLAFTSPVFSDDTFP 159


>gi|307708640|ref|ZP_07645103.1| HemK protein [Streptococcus mitis NCTC 12261]
 gi|307615214|gb|EFN94424.1| HemK protein [Streptococcus mitis NCTC 12261]
          Length = 278

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 35/175 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+   +L V  R LI R                ++E +LA     
Sbjct: 61  QLATHKPAQYIIGQADFYGMQLKVDERVLIPRPE-----------TEELVELILAENPET 109

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A +I++ ++  A  N   N   N+   +    
Sbjct: 110 NFSVLDIGTGSGAIALALAKNRSAWSVTAADISQEALNLASENAK-NQKLNIFFKKSDC- 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPHIL 319
                                S ++  I  +PP   R    +  + ++ + PH+ 
Sbjct: 168 -----------------FAEISEKYDIIVSNPPYISREDESEVGLNVLHSEPHLA 205


>gi|306821075|ref|ZP_07454693.1| ribosomal protein L11 methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550911|gb|EFM38884.1| ribosomal protein L11 methyltransferase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 319

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 2/96 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    +         L+++ CG+G  S+  A     +V+AV++ + +V+ ++ N+  
Sbjct: 166 TTRMCINAIEKYMKKGDSLIDIGCGSGILSIAAAHLGAQKVVAVDLDRLAVKVSKENVEL 225

Query: 254 NHVNNVKIVR-MSSKEFTQAMRREREFNRLKDIDIH 288
           N  +N   VR     +           N + DI   
Sbjct: 226 NGFSNTIDVRYGDLTDVIDEKADVIVANIIADIIAK 261


>gi|2576396|gb|AAB82325.1| possible protoporphyrinogen oxidase [Neisseria gonorrhoeae]
          Length = 218

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 37/195 (18%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 50  EEMPDEIRQRADRLAQRRLNGEPVAY-----ILGVREFYGIRFTVNPNVLIPRPE----- 99

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V A +I+ P++E 
Sbjct: 100 ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISTPALET 152

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  ER++               I  +PP   +G 
Sbjct: 153 ARKNAADLGAR-VEFAHGS--WFDTDMPSERQW-------------DIIVSNPPYIENGD 196

Query: 305 DDATVGMVQAYPHIL 319
              + G ++  P I 
Sbjct: 197 KHLSQGDLRFEPQIA 211


>gi|83859688|ref|ZP_00953208.1| 3-demethylubiquinone-9 3-methyltransferase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852047|gb|EAP89901.1| 3-demethylubiquinone-9 3-methyltransferase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 256

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 15/133 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG G  S  +AR    V  V+ A+ +++ A  +   N ++ +     ++++  +
Sbjct: 71  KVLDIGCGGGLVSEPIARLGASVTGVDAAEANIKTALVHAEENGLS-IDYRHGTAEQLLE 129

Query: 272 AMRREREFNRLK-DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN--PDSL 328
               E+    L  ++  H         +  R         MV+    ++  S N  P + 
Sbjct: 130 DGGPEQFDVVLNLEVVEHVANPDQFLRNCAR---------MVKPGGMMIVGSINRTPRAF 180

Query: 329 CRDLSILSTTHTI 341
               +I    + +
Sbjct: 181 A--TAIFGAEYVL 191


>gi|288930472|ref|YP_003434532.1| hypothetical protein Ferp_0067 [Ferroglobus placidus DSM 10642]
 gi|288892720|gb|ADC64257.1| protein of unknown function Met10 [Ferroglobus placidus DSM 10642]
          Length = 277

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 212 DLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
            +L +Y G G +++V+AR      V+ +E+   +VE  + N+  N V   VK++    ++
Sbjct: 123 RVLVMYAGVGPYAIVIARLSKPREVIGIELNPVAVEYFKKNVKLNKVEGIVKVIEGDVRD 182

Query: 269 FTQAMRREREFNRLKDI 285
               +    +   +   
Sbjct: 183 VVPKLEGVFDRVVMPAP 199


>gi|294867327|ref|XP_002765064.1| Protein FAM86A, putative [Perkinsus marinus ATCC 50983]
 gi|239864944|gb|EEQ97781.1| Protein FAM86A, putative [Perkinsus marinus ATCC 50983]
          Length = 337

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 19/183 (10%)

Query: 86  LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
           +   + A +   P L+  +  +  L ++  +  +T   H L  +   +    L      R
Sbjct: 46  IDETIYADLTCSPPLKYSVAFVKRLVTELGR--ITDEVHDLWYEFIAQNNAELNTPESER 103

Query: 146 KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
            +    +G ++   I L  D     +      L          Q       ++  W++A 
Sbjct: 104 GFIAYRVGDSS---ISLGYDVSGRFIEQGTTGLS---------Q--WEAGRYLASWLVAN 149

Query: 206 TKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              ++G D+LEL  G+G   LV A      RV+  +     V+A R N+ +N ++NV++ 
Sbjct: 150 KCAVEGKDVLELGSGSGLVGLVAAGFSAARRVVLTDGNALVVKALRANVKSNKLDNVEVA 209

Query: 263 RMS 265
            ++
Sbjct: 210 ELN 212


>gi|126321364|ref|XP_001379655.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen
           137 [Monodelphis domestica]
          Length = 871

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    ++ A  N     V + ++ +         
Sbjct: 700 IVDAFCGVGGNAIQFALTGKRVIAIDIDPAKIDLAHNNAEVYGVADKIEFICGDFMLLAS 759

Query: 272 AMRREREF--NRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            ++ +  F        D   +  F    +  P          M+    +I+Y
Sbjct: 760 DLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSQMIT--KNIVY 809


>gi|285019908|ref|YP_003377619.1| hypothetical protein XALc_3146 [Xanthomonas albilineans GPE PC73]
 gi|283475126|emb|CBA17625.1| hypothetical protein XALc_3146 [Xanthomonas albilineans]
          Length = 393

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 16/106 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAA 253
                +W+    +G    +L+L C  G F++    R    V+ V+I +  +E A+ N   
Sbjct: 207 QRENRQWLSQQVQG--KRVLDLCCNTGGFAVYAQVRGAAEVVGVDIDQDVIEIAKGNARL 264

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           N             E      +   F  L+D      ++  + +DP
Sbjct: 265 N-------------EVRPKFVQADIFPYLRDAAARGDQYDVVILDP 297


>gi|261210151|ref|ZP_05924448.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. RC341]
 gi|260840691|gb|EEX67240.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. RC341]
          Length = 199

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       +   L+L+ G+G      A R   +V  +E+   +    + N+ 
Sbjct: 46  VKETLFNWLAQEVP--KARCLDLFAGSGGLGFECASRQASQVTMLELNPLAFNQLKTNVQ 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++ M +  F +                    +  +F+DPP R GL   T  +
Sbjct: 104 SLKAENIELIHMDALAFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 148

Query: 312 VQAYPH-----ILYISC 323
           ++         ++YI C
Sbjct: 149 LEQNGWLTPQAMIYIEC 165


>gi|238063045|ref|ZP_04607754.1| modification methylase hemK [Micromonospora sp. ATCC 39149]
 gi|237884856|gb|EEP73684.1| modification methylase hemK [Micromonospora sp. ATCC 39149]
          Length = 267

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 8/119 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
             +++E  +A T      +++L CG G     +A      R+ A +I   SV  AR N+ 
Sbjct: 79  TTYLVEQAVAVTSP-GAVVVDLCCGTGAIGAAVAARVPGTRLYACDIEPASVRCARRNLE 137

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                   +      +      R R    +  ++        I + PP +   +  V +
Sbjct: 138 PIG---GHVYEGDLYDALPG--RLRGAVDVLVVNAPYVPTDEIAMMPPEAREHEPLVAL 191


>gi|254439341|ref|ZP_05052835.1| Methyltransferase small domain family [Octadecabacter antarcticus
           307]
 gi|198254787|gb|EDY79101.1| Methyltransferase small domain family [Octadecabacter antarcticus
           307]
          Length = 253

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 19/111 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARY 249
           AG++  +L   + A  G    +LEL CG G   L LA     +   AVE+     +  R 
Sbjct: 28  AGVDPVLLAAAVRARVGQS--VLELGCGTGAALLCLATRVSGLGLHAVEVQPHYADICRA 85

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N  ANH++              AM    +   L   D+ +  F  + V+PP
Sbjct: 86  NAVANHID--------------AMIWTADLRDLP-ADLRALTFDHVIVNPP 121


>gi|220917304|ref|YP_002492608.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955158|gb|ACL65542.1| methyltransferase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 179

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 16/94 (17%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
           GD+L+LY G G  +L  L+R   R + VE  +P+ E  R N       + V++VR    E
Sbjct: 44  GDVLDLYAGTGALALEALSRGCARAVCVEADRPTAELLRRNAETCGWTDRVEVVRGRVPE 103

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
               +                 RF   FVDPP +
Sbjct: 104 ALARL--------------APGRFALAFVDPPYA 123


>gi|53720258|ref|YP_109244.1| protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei K96243]
 gi|76810885|ref|YP_334496.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia pseudomallei 1710b]
 gi|126440783|ref|YP_001060075.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 668]
 gi|126451653|ref|YP_001067337.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|134280110|ref|ZP_01766821.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 305]
 gi|167739812|ref|ZP_02412586.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 14]
 gi|167817035|ref|ZP_02448715.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 91]
 gi|167825446|ref|ZP_02456917.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 9]
 gi|167846936|ref|ZP_02472444.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei B7210]
 gi|167903905|ref|ZP_02491110.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei NCTC 13177]
 gi|167912164|ref|ZP_02499255.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 112]
 gi|217420757|ref|ZP_03452262.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 576]
 gi|226193841|ref|ZP_03789443.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|242315823|ref|ZP_04814839.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254180955|ref|ZP_04887553.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1655]
 gi|254191798|ref|ZP_04898301.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254195990|ref|ZP_04902415.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei S13]
 gi|254261099|ref|ZP_04952153.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1710a]
 gi|254298932|ref|ZP_04966382.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 406e]
 gi|52210672|emb|CAH36656.1| probable protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei K96243]
 gi|76580338|gb|ABA49813.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia pseudomallei 1710b]
 gi|126220276|gb|ABN83782.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 668]
 gi|126225295|gb|ABN88835.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1106a]
 gi|134248117|gb|EBA48200.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 305]
 gi|157808813|gb|EDO85983.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 406e]
 gi|157939469|gb|EDO95139.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169652734|gb|EDS85427.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei S13]
 gi|184211494|gb|EDU08537.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1655]
 gi|217396169|gb|EEC36186.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 576]
 gi|225934146|gb|EEH30131.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei Pakistan 9]
 gi|242139062|gb|EES25464.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1106b]
 gi|254219788|gb|EET09172.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 1710a]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++LE+  G G  + +LA    RV  VEI     + A  N+
Sbjct: 63  PRVEARILQELAVKKHE---NVLEIGAGGGYMAALLAARGQRVTTVEIDPDLAKFAEENL 119

Query: 252 AANHVNNVKIVRMS 265
             N V N ++V   
Sbjct: 120 KKNGVTNAEVVLGD 133


>gi|313667605|ref|YP_004047889.1| Hemk protein [Neisseria lactamica ST-640]
 gi|313005067|emb|CBN86499.1| putative Hemk protein [Neisseria lactamica 020-06]
          Length = 273

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 35/179 (19%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEI 239
              N  +        H++E VLA      G + +L  G+G  ++ +A  R    V A +I
Sbjct: 75  FAVNPNVLIPRPETEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVCASDI 133

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           + P++E AR N A      V+    S   F   M  E              ++  I  +P
Sbjct: 134 SPPALETARKNAADLGAA-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNP 177

Query: 300 P--RSGLDDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
           P   +G +  + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 178 PYIENGDEHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|307104307|gb|EFN52561.1| hypothetical protein CHLNCDRAFT_138547 [Chlorella variabilis]
          Length = 214

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 22/128 (17%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARY 249
             I   ML  V  +    +G  +++L CG    S+  A      V+ V++   ++  A+ 
Sbjct: 30  PHIAARMLYTVANSYDEFEGQTVIDLGCGTAMLSIGAAMLGALHVVGVDVDGDALRVAQQ 89

Query: 250 NIAA-NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGL 304
           N         +  VR    +     R                R  T+ ++PP    R G 
Sbjct: 90  NAEEYEEPLPIDFVRCDVGQVALQRR---------------LRADTVVMNPPFGTRRKGA 134

Query: 305 DDATVGMV 312
           D   +   
Sbjct: 135 DAEFLRAA 142


>gi|302558936|ref|ZP_07311278.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302476554|gb|EFL39647.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 431

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFTQ 271
           + +L CG G  +L  AR   RVLAV+    + + AR N  A  + ++  VR     E   
Sbjct: 135 VADLCCGIGGDALAFARAGIRVLAVDRDPLTCQVARANADALGLGDLIEVREADVTEVDT 194

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           A       +  +        F      PP
Sbjct: 195 AGYDAVFVDPARRSSARGRIFDPEAYSPP 223


>gi|229176250|ref|ZP_04303734.1| Methyltransferase [Bacillus cereus MM3]
 gi|228607231|gb|EEK64569.1| Methyltransferase [Bacillus cereus MM3]
          Length = 250

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 30/68 (44%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A  N+  + V NV+  
Sbjct: 39  VKERCKLSDTLLDVGTGGGENVLHIASSAKLLIGIDNSNGMIETAHSNLKKSGVQNVEFF 98

Query: 263 RMSSKEFT 270
           +M S+   
Sbjct: 99  QMDSEALI 106


>gi|261380555|ref|ZP_05985128.1| RNA methyltransferase, RsmD family [Neisseria subflava NJ9703]
 gi|284796523|gb|EFC51870.1| RNA methyltransferase, RsmD family [Neisseria subflava NJ9703]
          Length = 190

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 31/173 (17%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
            +N+ +I   +    +   ++   L  R   +S       +   +  W+     G    +
Sbjct: 9   HSNQVRIIGGQCRGRKLTFLSADGL--RPTPDS-------VREKLFNWLGQDLTGKT--V 57

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G   +   +RH  +V+ V+  + +V+  + NI    +   KI       +   
Sbjct: 58  LDLFSGSGALGMEAASRHAAKVVMVDNHRQTVQTLQKNIRELGLKQAKIECSDGMAYLAR 117

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA----TVGMVQAYPHILYI 321
           +               S +F  +F+DPP +  D       +        ++YI
Sbjct: 118 L---------------SEKFDVVFLDPPFAWEDWQNLFIRLQSHLKNGAMVYI 155


>gi|167895518|ref|ZP_02482920.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           pseudomallei 7894]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++LE+  G G  + +LA    RV  VEI     + A  N+
Sbjct: 63  PRVEARILQELAVKKHE---NVLEIGAGGGYMAALLAARGQRVTTVEIDPDLAKFAEENL 119

Query: 252 AANHVNNVKIVRMS 265
             N V N ++V   
Sbjct: 120 KKNGVTNAEVVLGD 133


>gi|167464491|ref|ZP_02329580.1| ribosomal protein L11 methyltransferase [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 322

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN- 185
           +D      +IR  D         +       TK    +   +E    +   +I       
Sbjct: 93  IDTGNPIFSIRQVDDESWANEWKKYFKPIRVTKRLTIKPTWEE-YEPSTDEIILELDPGM 151

Query: 186 SF---TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAK 241
           +F   T     + + +LE V+        D++++  G+G  S+  A+   + VLA+++  
Sbjct: 152 AFGTGTHATTSLCLKILEQVVR----GGEDVIDVGTGSGILSIAAAKLGAEHVLAIDLDP 207

Query: 242 PSVEAARYNIAANHVNNVKIVR 263
            +V++A  N   N + +  +VR
Sbjct: 208 VAVKSAGENSKLNGMQSRIMVR 229


>gi|258539802|ref|YP_003174301.1| methyltransferase [Lactobacillus rhamnosus Lc 705]
 gi|257151478|emb|CAR90450.1| Methyltransferase [Lactobacillus rhamnosus Lc 705]
          Length = 241

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 15/106 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +++L  GNG   L LAR  D RV  VE+     + AR ++A N + NV +  
Sbjct: 36  AQIKRHSRVVDLAAGNGAVGLFLARKTDNRVTMVELQPRLADMARRSVALNALANVDVHE 95

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
               + T+ + ++                  +  +PP   +   ++
Sbjct: 96  GDLADTTKFVAKD--------------SVDVVTCNPPYFKISARSI 127


>gi|121591225|ref|ZP_01678526.1| methyltransferase [Vibrio cholerae 2740-80]
 gi|121546923|gb|EAX57074.1| methyltransferase [Vibrio cholerae 2740-80]
          Length = 215

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 210 QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + ++L  +   G F L  L     RV+  ++++P+++ A++N   N             +
Sbjct: 38  EKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNG--------FDISK 89

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                     F  L++      RF  + +DPP+     A + 
Sbjct: 90  KRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 131


>gi|332185175|ref|ZP_08386924.1| methyltransferase domain protein [Sphingomonas sp. S17]
 gi|332014899|gb|EGI56955.1| methyltransferase domain protein [Sphingomonas sp. S17]
          Length = 278

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAV 237
           +++ E SF    A +  H L+  +A     +G  L++  G G+ SL +  AR    V  V
Sbjct: 19  WQRTERSF----ADLARH-LDKAIAGVAPNRGRALDIGSGAGSTSLAIHAARPGLDVTGV 73

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +++   V  AR        +  + V   +    +
Sbjct: 74  DLSPELVALARRRAEQASPDAPRFVCGDAIAVAE 107


>gi|206579475|ref|YP_002239393.1| hypothetical protein KPK_3573 [Klebsiella pneumoniae 342]
 gi|206568533|gb|ACI10309.1| conserved hypothetical protein [Klebsiella pneumoniae 342]
          Length = 423

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L     +V +V+ ++ +++ AR N+  N ++  
Sbjct: 239 RLATRRYVADKRVLNCFSYTGGFAVSALMGGCRQVTSVDTSQEALDVARQNVELNGLD-- 296

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
               +S  EF     R+  F  L+       +F  I +DPP+   +    +G  + Y  I
Sbjct: 297 ----LSKAEFV----RDDVFKLLRKYRDQGEKFDVIVMDPPKFVENKSQLMGACRGYKDI 348


>gi|13472800|ref|NP_104367.1| SAM dependent methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14023547|dbj|BAB50153.1| SAM dependent methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 338

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 64/189 (33%), Gaps = 27/189 (14%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKT------KICLDRDYVDERLTVAGRTLIYRQIEN 185
            E     + AL A+ ++         T      +    +  + E   +    + Y     
Sbjct: 81  PEGQAIWQKALPAKDWERADAIFTGDTDEEGIGRWRFPKMPLGETWPMKHDGIDYLGRFT 140

Query: 186 SFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           SF           H   M   + AA + ++  +L L+   G  SLV AR    V  V+ +
Sbjct: 141 SFRHVGVFPEQASHWDHMAGLIAAAKRPVK--VLNLFGYTGLASLVAARAGAEVTHVDAS 198

Query: 241 KPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           K ++  AR N     +    ++ +   + +F      ERE  R         R+  I  D
Sbjct: 199 KKAIGWARENQEMAGLGGKPIRWIVDDAVKF-----AEREERR-------GSRYDIILFD 246

Query: 299 PPRSGLDDA 307
           PP  G    
Sbjct: 247 PPAYGRGPK 255


>gi|319762924|ref|YP_004126861.1| hypothetical protein Alide_2237 [Alicycliphilus denitrificans BC]
 gi|330825005|ref|YP_004388308.1| S-adenosylmethionine-dependent methyltransferase [Alicycliphilus
           denitrificans K601]
 gi|317117485|gb|ADU99973.1| hypothetical protein Alide_2237 [Alicycliphilus denitrificans BC]
 gi|329310377|gb|AEB84792.1| S-adenosylmethionine-dependent methyltransferase [Alicycliphilus
           denitrificans K601]
          Length = 313

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 42/123 (34%), Gaps = 18/123 (14%)

Query: 200 EWV--LAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           EW     A +G    +L L+     FS+  LA    +V+ V++ + ++   + N   N +
Sbjct: 140 EWATDFKAREGRGARVLNLFAYTCAFSVAALAGGAAQVVNVDMGRGAIATGQQNHRLNGL 199

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           +    +   + +   +  R                +  +  DPP            + Y 
Sbjct: 200 DGASFL---AHDIFASWGR----------IARGGPYDLVIADPPSYQKGSFVAA--KDYA 244

Query: 317 HIL 319
            ++
Sbjct: 245 RVV 247


>gi|223039326|ref|ZP_03609615.1| methyltransferase domain family [Campylobacter rectus RM3267]
 gi|222879387|gb|EEF14479.1| methyltransferase domain family [Campylobacter rectus RM3267]
          Length = 269

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +  E++          LL+  CG G  S++ A+  D++   + +   +E AR N     
Sbjct: 48  AYAREFIDKVDFTGVSTLLDFACGAGALSVLAAKKVDQIYGYDFSPKMLEFARGNAQTYG 107

Query: 256 VNNVKIVRMSSKE 268
             NVK  + + ++
Sbjct: 108 AKNVKFAQKAFED 120


>gi|17548395|ref|NP_521735.1| methyltransferase protein [Ralstonia solanacearum GMI1000]
 gi|17430641|emb|CAD17325.1| putative sam-dependent methyltransferases protein [Ralstonia
           solanacearum GMI1000]
          Length = 274

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 9/125 (7%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANH 255
            M ++        Q  LL++  G+G  +L LAR+   RV  V++   +++  R    A  
Sbjct: 49  EMRQFSQWLELSPQSHLLDVCSGSGGPALFLARNSGCRVTGVDLHPDALQTGRQLAQALE 108

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           ++          +F +   R+R        D   +   ++   P R  L      +++  
Sbjct: 109 LH-------DRSQFVECDVRQRMPFPDGTFDAL-WCIDSVIHIPDRLALLREWCRLLKPG 160

Query: 316 PHILY 320
              LY
Sbjct: 161 GRFLY 165


>gi|124266446|ref|YP_001020450.1| L-isoaspartate(D-aspartate) O-methyltransferase [Methylibium
           petroleiphilum PM1]
 gi|209573200|sp|A2SF76|PIMT_METPP RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|124259221|gb|ABM94215.1| L-isoaspartate(D-aspartate) O-methyltransferase [Methylibium
           petroleiphilum PM1]
          Length = 269

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 192 AGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             +   M+E +LA    G +  LLE+  G G  + VLA+   +V+++E  +P  + AR N
Sbjct: 115 PSVVARMIELMLALQPAGARPRLLEIGSGCGYQAAVLAQLARQVVSIERLRPLYDKAREN 174

Query: 251 IAANHVNNVKIVRMS 265
           +A  +  N+++V   
Sbjct: 175 LAPLNFGNLRLVYGD 189


>gi|294817071|ref|ZP_06775713.1| Methyltransferase family protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294321886|gb|EFG04021.1| Methyltransferase family protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 916

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 9/113 (7%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             GD L+L CG G  +L LAR   RV AV+I+  +VE          +     +      
Sbjct: 56  PPGDALDLGCGTGGDALWLARQGWRVTAVDISAVAVE------RLAGLARAHALDGRVSA 109

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
               +R           D+ S  +     D  R+ +  +    ++    +L +
Sbjct: 110 VRHDLRTSFPSG---GFDLISAHYLHTPFDLDRAAVLRSATRALRPGGRLLVV 159


>gi|271501315|ref|YP_003334340.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Dickeya dadantii Ech586]
 gi|270344870|gb|ACZ77635.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Dickeya dadantii Ech586]
          Length = 310

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 8/144 (5%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
            +L+L  G+G  ++  A+ F    V AV+I+  ++     NI  + +  NV  +R     
Sbjct: 135 HILDLCTGSGCIAIACAQAFPEAEVDAVDISADALAVTEQNIQQHGMEYNVTPIRSDLFR 194

Query: 269 FTQAMRREREFNRLKDIDIHS-YRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327
              A+  +        +D          +   P  GL   + G +     I  ++C PD 
Sbjct: 195 ELPAIHYDLIVTNPPYVDEEDMADLPQEYRFEPELGLAAGSDG-LTLVRRI--MACAPDY 251

Query: 328 LCRDLSILSTTHTIERLALFDQFP 351
           L  D  ++        + L DQ+P
Sbjct: 252 LAEDGVLICEVGN-SMVHLMDQYP 274


>gi|229494453|ref|ZP_04388216.1| methyltransferase type 12 [Rhodococcus erythropolis SK121]
 gi|229318815|gb|EEN84673.1| methyltransferase type 12 [Rhodococcus erythropolis SK121]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N  ++E+  A      G  L+L CG G  +L LA     V  ++ +  ++E AR   A +
Sbjct: 29  NELLVEYATALPH---GQALDLACGEGRNALWLATRGWEVTGIDYSAVAIEKARMIAARS 85

Query: 255 H---VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK-TIFVDPPRSGLDDATVG 310
               ++ +            A R E+ ++    + +H    + T+ V+   + L    + 
Sbjct: 86  PRSVLDRLDYRCGDVTVADYASRNEQGYDLALLLYLHLPAPQRTLVVNRAINSLKPDGIL 145

Query: 311 MVQAYPH 317
           M+  +  
Sbjct: 146 MILGHDR 152


>gi|91094613|ref|XP_968719.1| PREDICTED: similar to CG32281 CG32281-PA [Tribolium castaneum]
 gi|270016438|gb|EFA12884.1| hypothetical protein TcasGA2_TC011563 [Tribolium castaneum]
          Length = 507

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 92/270 (34%), Gaps = 42/270 (15%)

Query: 74  DYFMPGSLLINALMIEM--------MATIRLEPLLRAKLF-QIDYLTSQSDQAIVTLIYH 124
           D       L+N L +++             +E + RA L   ++ ++S +    +  +  
Sbjct: 82  DLPPETQKLLNDLCVQLELKPLTLNYENFSIEGVFRAVLPPNVEGMSSFTKVGHIVHVNL 141

Query: 125 RL-LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY--- 180
           R  L          L D +   +  +  +G  + T     R++  E L     T  +   
Sbjct: 142 REHLVPFKDIIGQVLFDKVPNCRTVVNKVGSIDNT----YRNFQMEVLRGENDTQTHVRE 197

Query: 181 --RQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVL 235
                E  F +   N+ +     E          GD++ +++ G G FS+ LAR   +V 
Sbjct: 198 NKCVFEFDFAKVYWNSRLCT---EHERIVNMIESGDVVFDVFAGVGPFSVPLARKKCQVF 254

Query: 236 AVEIAKPSVEAARYNIAANHV----------NNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A ++   S +   +N   N V          +  + +    KE       +  F  L ++
Sbjct: 255 ANDLNPESFKWLNHNFKINKVGENYFKSYNKDGREFILGEVKELLPKFSAKNVF-ILMNL 313

Query: 286 DIHSYRFKTIFVD------PPRSGLDDATV 309
              +  F T FVD       P  G     V
Sbjct: 314 PALAVDFLTTFVDLFSNDELPEFGKHPVVV 343


>gi|57640742|ref|YP_183220.1| hypothetical protein TK0807 [Thermococcus kodakarensis KOD1]
 gi|57159066|dbj|BAD84996.1| hypothetical protein, conserved [Thermococcus kodakarensis KOD1]
          Length = 383

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 26/67 (38%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                  +     + ++ CG G   +  A   +R   ++I    +E AR N     V+N+
Sbjct: 74  YRAERLKEFGVESIADVSCGIGIQLIFYAMKVERAYGIDIDPLKIEFARRNAEKYGVSNI 133

Query: 260 KIVRMSS 266
           + +   S
Sbjct: 134 EFINADS 140


>gi|268319353|ref|YP_003293009.1| methyltransferase , ribosomal protein L11 [Lactobacillus johnsonii
           FI9785]
 gi|262397728|emb|CAX66742.1| methyltransferase , ribosomal protein L11 [Lactobacillus johnsonii
           FI9785]
          Length = 315

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              ++   +         +L++  G+G  ++  ++     VL  +I+  +V AA+ NIA 
Sbjct: 163 TTQLVLLAMERALVKPMSVLDVGTGSGILAIAASKLGASHVLGTDISDEAVTAAKENIAL 222

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           N+++N+ + + +  +           N L DI + 
Sbjct: 223 NNIDNIDVRKANLLKDINEKYDLIVANILADILLE 257


>gi|290957124|ref|YP_003488306.1| hypothetical protein SCAB_26431 [Streptomyces scabiei 87.22]
 gi|260646650|emb|CBG69747.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 192

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L  L+R     L VE    +    R N+ +  +   ++    +++  
Sbjct: 46  RVLDLYAGSGAVGLEALSRGAGHTLLVEADARAARTIRDNVRSLGLPGAEVRPGKAEQII 105

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           QA                   +  +F+DPP +  DD    ++
Sbjct: 106 QA-------------PAPDEPYDLVFLDPPYAVPDDDLREIL 134


>gi|224542027|ref|ZP_03682566.1| hypothetical protein CATMIT_01200 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525084|gb|EEF94189.1| hypothetical protein CATMIT_01200 [Catenibacterium mitsuokai DSM
           15897]
          Length = 400

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 3/126 (2%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
            VL         +L+ +   G F+L  A      V AV++++ +++    N   NH+   
Sbjct: 219 RVLLRNMSAGKTVLDCFSHTGGFALNAAIGGAKHVTAVDVSQTALDQGLANAKMNHLEER 278

Query: 259 VKIVRMSSKEFTQAM-RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +  V+    ++     + + +   L        R            ++   + +++   +
Sbjct: 279 MSFVQDDVFDYLDKCHQGQYDIIVLDPPAFTKSRRTVNHAYNGYKNINMKAMKLLRQGGY 338

Query: 318 ILYISC 323
           ++  SC
Sbjct: 339 LITCSC 344


>gi|89070537|ref|ZP_01157826.1| methyltransferase, UbiE/COQ5 family protein [Oceanicola granulosus
           HTCC2516]
 gi|89043844|gb|EAR50042.1| methyltransferase, UbiE/COQ5 family protein [Oceanicola granulosus
           HTCC2516]
          Length = 206

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-- 261
           A       ++LEL CG G  +L  A     VLA + + P +E AR   A   V NV    
Sbjct: 34  AEYLTPDSEVLELACGTGTTALWHAPKVRHVLATDFSAPMLEIARARAAEQGVENVTFRQ 93

Query: 262 VRMSSKEFTQA 272
             + + E   A
Sbjct: 94  TAIEALEVAPA 104


>gi|310286856|ref|YP_003938114.1| methyltransferase [Bifidobacterium bifidum S17]
 gi|309250792|gb|ADO52540.1| methyltransferase [Bifidobacterium bifidum S17]
          Length = 220

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVE-------AARYNIAA 253
           + +        +L+L+ G G   +  L+R    ++AVE + P+         A + N + 
Sbjct: 35  LDSWQVLDDARVLDLFAGTGALGIEALSRGARELVAVESSAPAAALIAKTLTALQRNRSW 94

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFN-RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +++R  ++++  +       N         S  F  IF+DPP +   +    ++
Sbjct: 95  ERGMTARVIRARAEKYVASGAARSASNADAAGGSAKSAAFDVIFIDPPYAFATEDCNQLL 154

Query: 313 QAY 315
              
Sbjct: 155 SDM 157


>gi|307354944|ref|YP_003895995.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307158177|gb|ADN37557.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 275

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR----HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           V  A+      +L+L  G G F   LA        RV+ V++    ++ AR N       
Sbjct: 69  VAIASLKEGETVLDLGSGPG-FDCFLAANRVGKSGRVIGVDMTPDMLKRARKNAEKGGYT 127

Query: 258 NVKIVRMSSKEF 269
           NV+  +   ++ 
Sbjct: 128 NVEFRQGEIEDL 139


>gi|284048610|ref|YP_003398949.1| methyltransferase small [Acidaminococcus fermentans DSM 20731]
 gi|283952831|gb|ADB47634.1| methyltransferase small [Acidaminococcus fermentans DSM 20731]
          Length = 409

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 62/172 (36%), Gaps = 37/172 (21%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEW----VLAATKGIQGDLLELYCGNGNFSLVLA 228
           +    L YR         N     + L+     +  +       +L+ +   G F+L  A
Sbjct: 198 ITENGLRYRVDV-----VNGQKTGYFLDQKYNRLAVSRICAGKHVLDCFTHTGPFALNAA 252

Query: 229 RH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID 286
           +     V AV+I+  +++ AR N A N + + ++ V  +  E+   +  +++        
Sbjct: 253 KGGAASVTAVDISGEALKRARDNFALNGLEDKIQTVEANVFEYLTDLENKKQHP------ 306

Query: 287 IHSYRFKTIFVDPPR------------SGLDDATVGMVQAYPHILYI---SC 323
                F  I +DPP              G  +  +  ++  P   Y+   SC
Sbjct: 307 -----FDFIILDPPAFTKSSHTVKSAFRGYKEINLKAMKLLPRGGYLATCSC 353


>gi|224282413|ref|ZP_03645735.1| hypothetical protein BbifN4_01142 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313139557|ref|ZP_07801750.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132067|gb|EFR49684.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 220

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVE-------AARYNIAA 253
           + +        +L+L+ G G   +  L+R    ++AVE + P+         A + N + 
Sbjct: 35  LDSWQVLDDARVLDLFAGTGALGIEALSRGARELVAVESSAPAAALIAKTLTALQRNRSW 94

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFN-RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +++R  ++++  +       N         S  F  IF+DPP +   +    ++
Sbjct: 95  ERGMTARVIRARAEKYVASGAARSASNADAAGGSAKSAAFDVIFIDPPYAFATEDCNQLL 154

Query: 313 QAY 315
              
Sbjct: 155 SDM 157


>gi|119513375|ref|ZP_01632409.1| 3-demethylubiquinone-9 3-methyltransferase [Nodularia spumigena
           CCY9414]
 gi|119461984|gb|EAW42987.1| 3-demethylubiquinone-9 3-methyltransferase [Nodularia spumigena
           CCY9414]
          Length = 252

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG G  S  LA+    V  ++++  S++ A+ +   NH+ N+      ++    
Sbjct: 48  KVLDIGCGGGLASETLAKQEACVTGIDLSLESIKVAQAHARKNHL-NIDYYWGFAENLPF 106

Query: 272 AMRR 275
           A ++
Sbjct: 107 AAKK 110


>gi|111019088|ref|YP_702060.1| ubiquinone/menaquinone biosynthesis methyltransferase [Rhodococcus
           jostii RHA1]
 gi|110818618|gb|ABG93902.1| probable ubiquinone/menaquinone biosynthesis methyltransferase
           [Rhodococcus jostii RHA1]
          Length = 277

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +L++ CG G+ +L  A        V  V++A   +E  R   +   + N++ V   + 
Sbjct: 42  VLDVCCGAGSSALPAATAVGPSGLVHGVDLADELLEQGRVKASERGLQNIEFVCADAT 99


>gi|325269725|ref|ZP_08136336.1| ribosomal protein L11 methyltransferase [Prevotella multiformis DSM
           16608]
 gi|324987926|gb|EGC19898.1| ribosomal protein L11 methyltransferase [Prevotella multiformis DSM
           16608]
          Length = 288

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
             +M+  +L         +L+  CG G  S+V A+      +  +I + SV  A++N   
Sbjct: 137 TTYMIVSLLLNMDLKGKRVLDCGCGTGILSIVAAKCGAKEAVCYDIDEWSVRNAQHNAEL 196

Query: 254 NHVN 257
           N V 
Sbjct: 197 NGVE 200


>gi|323492925|ref|ZP_08098065.1| hypothetical protein VIBR0546_16066 [Vibrio brasiliensis LMG 20546]
 gi|323312818|gb|EGA65942.1| hypothetical protein VIBR0546_16066 [Vibrio brasiliensis LMG 20546]
          Length = 200

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       +   L+L+ G+G       +R  + V  +E+   + +    NIA
Sbjct: 46  VKETLFNWIAQDVP--RAKCLDLFAGSGGLGFEAASRQAEMVTLIELNPSAFKQLEKNIA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           + + +N+K     +  F +                       +F+DPP R GL D TV +
Sbjct: 104 SLNASNLKAYNTDAISFLKQ---------------PGTPHHVVFIDPPFRKGLLDETVSL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++Y+
Sbjct: 149 LESNGWLADDAMIYV 163


>gi|297530735|ref|YP_003672010.1| methyltransferase [Geobacillus sp. C56-T3]
 gi|297253987|gb|ADI27433.1| methyltransferase [Geobacillus sp. C56-T3]
          Length = 204

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 14/94 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
           G+ L+L+ G+G   +  L+R  +RV+ V+  + +V+  R N+AA  +    +I    ++ 
Sbjct: 49  GNGLDLFAGSGGLGIEALSRGIERVIFVDHDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 107

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                        LK +     RF  IF+DPP  
Sbjct: 108 -----------RALKAVAKRGLRFAVIFLDPPYK 130


>gi|261419295|ref|YP_003252977.1| methyltransferase [Geobacillus sp. Y412MC61]
 gi|261375752|gb|ACX78495.1| methyltransferase [Geobacillus sp. Y412MC61]
          Length = 198

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 14/94 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
           G+ L+L+ G+G   +  L+R  +RV+ V+  + +V+  R N+AA  +    +I    ++ 
Sbjct: 43  GNGLDLFAGSGGLGIEALSRGIERVIFVDHDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 101

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                        LK +     RF  IF+DPP  
Sbjct: 102 -----------RALKAVAKRGLRFAVIFLDPPYK 124


>gi|261329762|emb|CBH12744.1| arginine N-methyltransferase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 390

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 21/143 (14%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
              VL      +  +LE+  G+G  SL+ A+     V+AVE ++   + AR NI AN++ 
Sbjct: 85  YYEVLKKHVTPETGVLEIGAGSGLLSLMAAKLGAKWVVAVEGSEELAKLARENIRANNME 144

Query: 258 N-VKIVRMSSKE-----------------FTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           + VK++ M S E                 F   M  E   + + D+     +  T  +  
Sbjct: 145 HQVKVLHMMSTELKPKHLPEPPDVLLSEIFGTMMLGESALDYVVDVRNRLLKPTTKII-- 202

Query: 300 PRSGLDDATVGMVQAYPHILYIS 322
           P+ G   A      A   I  +S
Sbjct: 203 PQFGTQYAVPIECDALHRISSVS 225


>gi|319766111|ref|YP_004131612.1| methyltransferase [Geobacillus sp. Y412MC52]
 gi|317110977|gb|ADU93469.1| methyltransferase [Geobacillus sp. Y412MC52]
          Length = 204

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 14/94 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
           G+ L+L+ G+G   +  L+R  +RV+ V+  + +V+  R N+AA  +    +I    ++ 
Sbjct: 49  GNGLDLFAGSGGLGIEALSRGIERVIFVDHDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 107

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                        LK +     RF  IF+DPP  
Sbjct: 108 -----------RALKAVAKRGLRFAVIFLDPPYK 130


>gi|212722044|ref|NP_001131280.1| hypothetical protein LOC100192593 [Zea mays]
 gi|194691072|gb|ACF79620.1| unknown [Zea mays]
          Length = 159

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIA 252
           N  +L+ +        GD +LE+  G GN +  L A    RV AVEI    VEA     A
Sbjct: 59  NPRVLDAIARHAAISPGDAVLEVGPGTGNLTARLLASQAARVTAVEIDPRMVEAVTARAA 118

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREF 279
           A  + +   VR  ++     M + +  
Sbjct: 119 ALGLAHKFKVRPPARHSLDRMSKRKSL 145


>gi|90419370|ref|ZP_01227280.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336307|gb|EAS50048.1| putative protein-L-isoaspartate O-methyltransferase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 29/156 (18%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y+DE + +     I      +           +++        +   +L++ CG G  S 
Sbjct: 47  YIDEDVPLGNGRFIMEASPFA----------KLIQLAAIRPDDV---VLDVGCGTGYSSA 93

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           VL+     V+++E      EAA  N+A        +V     E   +             
Sbjct: 94  VLSHLAGSVVSLEQDPDLAEAATENLARLDYVTCAVVEGPLNEGYPS------------- 140

Query: 286 DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
                 F  IF+      L +  +  ++    ++ +
Sbjct: 141 ---EAPFDVIFMQGSVGILPETLLQQLRPGGRLVVV 173


>gi|72391756|ref|XP_846172.1| arginine N-methyltransferase [Trypanosoma brucei TREU927]
 gi|74832602|sp|Q582G4|ANM7_TRYBB RecName: Full=Protein arginine N-methyltransferase 7; Short=TbPRMT7
 gi|62358403|gb|AAX78867.1| arginine N-methyltransferase, putative [Trypanosoma brucei]
 gi|70802708|gb|AAZ12613.1| arginine N-methyltransferase, putative [Trypanosoma brucei brucei
           strain 927/4 GUTat10.1]
          Length = 390

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 21/143 (14%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
              VL      +  +LE+  G+G  SL+ A+     V+AVE ++   + AR NI AN++ 
Sbjct: 85  YYEVLKKHVTPETGVLEIGAGSGLLSLMAAKLGAKWVVAVEGSEELAKLARENIRANNME 144

Query: 258 N-VKIVRMSSKE-----------------FTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           + VK++ M S E                 F   M  E   + + D+     +  T  +  
Sbjct: 145 HQVKVLHMMSTELKSKHLPEPPDVLLSEIFGTMMLGESALDYVVDVRNRLLKPTTKII-- 202

Query: 300 PRSGLDDATVGMVQAYPHILYIS 322
           P+ G   A      A   I  +S
Sbjct: 203 PQFGTQYAVPIECDALHRISSVS 225


>gi|53726294|ref|YP_103739.1| protein-L-isoaspartate O-methyltransferase [Burkholderia mallei
           ATCC 23344]
 gi|121599364|ref|YP_992082.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei SAVP1]
 gi|124384056|ref|YP_001028527.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei NCTC 10229]
 gi|126448237|ref|YP_001081575.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei NCTC 10247]
 gi|166998381|ref|ZP_02264241.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei PRL-20]
 gi|238561067|ref|ZP_00442743.2| protein-L-isoaspartate [Burkholderia mallei GB8 horse 4]
 gi|254175400|ref|ZP_04882060.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei ATCC 10399]
 gi|254202441|ref|ZP_04908804.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei FMH]
 gi|254207773|ref|ZP_04914123.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei JHU]
 gi|254356326|ref|ZP_04972602.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei 2002721280]
 gi|52429717|gb|AAU50310.1| protein-L-isoaspartate O-methyltransferase, putative [Burkholderia
           mallei ATCC 23344]
 gi|121228174|gb|ABM50692.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei SAVP1]
 gi|124292076|gb|ABN01345.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei NCTC 10229]
 gi|126241107|gb|ABO04200.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei NCTC 10247]
 gi|147746688|gb|EDK53765.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei FMH]
 gi|147751667|gb|EDK58734.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei JHU]
 gi|148025323|gb|EDK83477.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei 2002721280]
 gi|160696444|gb|EDP86414.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei ATCC 10399]
 gi|238525481|gb|EEP88909.1| protein-L-isoaspartate [Burkholderia mallei GB8 horse 4]
 gi|243065444|gb|EES47630.1| putative protein-L-isoaspartate O-methyltransferase [Burkholderia
           mallei PRL-20]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++LE+  G G  + +LA    RV  VEI     + A  N+
Sbjct: 63  PRVEARILQELAVKKHE---NVLEIGAGGGYMAALLAARGQRVTTVEIDPDLAKFAEENL 119

Query: 252 AANHVNNVKIVRMS 265
             N + N ++V   
Sbjct: 120 KKNGMTNAEVVLGD 133


>gi|256390408|ref|YP_003111972.1| modification methylase, HemK family [Catenulispora acidiphila DSM
           44928]
 gi|256356634|gb|ACU70131.1| modification methylase, HemK family [Catenulispora acidiphila DSM
           44928]
          Length = 303

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 19/111 (17%)

Query: 195 NVHMLEWVLAATKGI---QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
              M+ W +   + +   +  +++L  G+G  +L +A+     RV AVE+++ +   A  
Sbjct: 114 TEVMVGWAIDKLRALDVAEPLIVDLCTGSGAIALSIAQEVPRARVHAVELSEDAYTWASR 173

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           NIAA+     + V +   +   A         L ++D    R   +  +PP
Sbjct: 174 NIAASEAG--ERVTLHLADAVTA---------LPELD---GRVDVVVSNPP 210


>gi|209519238|ref|ZP_03268040.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. H160]
 gi|209500318|gb|EEA00372.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. H160]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 161 CLDRDYVDERLTVAGRTLI---YRQIENSFTQPNAGINVHMLE------WVLAATKGIQG 211
            LD+D ++    V     +   YR +  +  +       HML        +         
Sbjct: 20  VLDQDVLNLLSIVKRENFVPAAYRDLAFADFEVPLPAGQHMLAPRVEARVLQELAVKKHE 79

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +LE+  G+G  + +LA     VL V+I     E A+ N+ AN V NV++    + 
Sbjct: 80  SVLEIGAGSGYMAALLAHRAQHVLTVDIEPELAELAKSNLIANGVLNVEVATGDAA 135


>gi|182626807|ref|ZP_02954545.1| SAM-dependent methyltransferase [Clostridium perfringens D str.
           JGS1721]
 gi|177907853|gb|EDT70451.1| SAM-dependent methyltransferase [Clostridium perfringens D str.
           JGS1721]
          Length = 256

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 33/160 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           A    +  +L+L  G G    ++   ++   V+ +EI +   E A  +   N++ + V  
Sbjct: 49  ANVNRKHSVLDLCTGTGIIPFIIYGKKNPKEVVGIEIQEEFAEMANRSAKINNIEDKVSF 108

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPH 317
           V    K+              K++     +F  + V+PP    +   V     +  A   
Sbjct: 109 VYGDLKD--------------KELSKSMPKFDVVTVNPPYKLNNAGIVNPEDKLAIARHE 154

Query: 318 ILYISCN-----PDS--LCRDLSILSTTHTIERLALFDQF 350
           I+   CN       S    +D   L   H  ERLA  D F
Sbjct: 155 IM---CNLEDVIAASRRFLKDNGRLYMVHRPERLA--DIF 189


>gi|270008699|gb|EFA05147.1| hypothetical protein TcasGA2_TC015264 [Tribolium castaneum]
          Length = 212

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 22/137 (16%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARY 249
             +  HML  V +    I G  + +L CG G  S+  A      V+  EI + ++   + 
Sbjct: 34  PHLGAHMLYTVQSQYGDIGGKFVADLGCGCGALSIGAAVLDASLVVGFEIDEDALGTFQE 93

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N+    V N+  V+    +           NR          F T+ ++PP     ++ +
Sbjct: 94  NVEDQDVGNIDCVQCDVVKMMP--------NRFHK------TFDTVIMNPPFGTKHNSGI 139

Query: 310 GM------VQAYPHILY 320
            M      ++   H++Y
Sbjct: 140 DMKFLEVALRLSNHVVY 156


>gi|86738954|ref|YP_479354.1| HemK family modification methylase [Frankia sp. CcI3]
 gi|86565816|gb|ABD09625.1| modification methylase, HemK family [Frankia sp. CcI3]
          Length = 336

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 195 NVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYN 250
              +++  +    G      +++L CG+G   + L  A     V A +I   +V  AR N
Sbjct: 134 TEFLVDQAVERVAGRSRPVTVVDLCCGSGAMGVALVAALPGIEVHAADIEPAAVRCARRN 193

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +A+      ++      E   A+ R      L   +        I + PP +   +  V 
Sbjct: 194 LASAG---GQVYDGDLYEPLPAVLRGHV--DLLAANAPYVPTDAIELMPPEAREHEPRVA 248

Query: 311 M 311
           +
Sbjct: 249 L 249


>gi|89895418|ref|YP_518905.1| hypothetical protein DSY2672 [Desulfitobacterium hafniense Y51]
 gi|89334866|dbj|BAE84461.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 180

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 16/112 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L+ G GN +L  L+R     + +E ++ + +  R NI    V   +++ M +  +
Sbjct: 43  ARVLDLFAGTGNLALEALSRGAKEAVLIEKSRTAQQIIRENIDHMGVEQARLIGMDAFAY 102

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHILY 320
            +  R ER              F  IF+DPP   GL + ++ ++     + Y
Sbjct: 103 LEQHREER--------------FDLIFIDPPYHQGLVEKSLKLLADPCRLTY 140


>gi|47215597|emb|CAG11628.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 285

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA-NHVNNVKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RVLA++I    ++ A++N    N  + +  V+        
Sbjct: 80  VIDAFCGVGGNAIQFALTGKRVLAIDINAERLDLAQHNAGVYNVADRIDFVQGDFLRLAP 139

Query: 272 AMRREREF 279
            +R +  F
Sbjct: 140 RLRGDVVF 147


>gi|27065262|pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065263|pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065264|pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065265|pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065266|pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065267|pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065268|pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065269|pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, P1 Spacegroup
 gi|27065280|pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065281|pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065282|pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065283|pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065284|pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065285|pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065286|pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065287|pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
 gi|27065292|pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup With Short
           Cell
 gi|27065293|pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup With Short
           Cell
 gi|27065294|pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup With Short
           Cell
 gi|27065295|pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, C2 Spacegroup With Short
           Cell
 gi|27065298|pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|27065299|pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|27065300|pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|27065301|pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|27065302|pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|27065303|pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
           From M. Thermoautotrophicum, Adohcy Binary Complex
 gi|33356903|pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
           Decarboxylase, The Product Of Gene Mt0146 In The
           Methanobacterium Thermoautotrophicum Genome
 gi|33356904|pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
           Decarboxylase, The Product Of Gene Mt0146 In The
           Methanobacterium Thermoautotrophicum Genome
 gi|33356905|pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
           Decarboxylase, The Product Of Gene Mt0146 In The
           Methanobacterium Thermoautotrophicum Genome
 gi|33356906|pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
           Decarboxylase, The Product Of Gene Mt0146 In The
           Methanobacterium Thermoautotrophicum Genome
          Length = 192

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVR 263
           A  G     +++ CG G  +L LA    RV A++    ++     N+  + + +NV +  
Sbjct: 29  AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXE 88

Query: 264 MSSKEFTQAMRREREFNRLKDIDIH 288
             + E            ++ DIDI 
Sbjct: 89  GDAPEALC---------KIPDIDIA 104


>gi|326314914|ref|YP_004232586.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371750|gb|ADX44019.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 444

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +          + ++  G+G+  L  AR      V A+E  +  VE AR N     V+N 
Sbjct: 272 LARMQLRAASRVWDIGAGSGSVGLEAARLCPQGHVWAMEKNEGDVEIARRNARDFGVSNH 331

Query: 260 KIVRMSSKEFTQAMRRER 277
            +V   + E   A     
Sbjct: 332 TLVHGKAPEGLDAWPDPD 349


>gi|229820096|ref|YP_002881622.1| methyltransferase [Beutenbergia cavernae DSM 12333]
 gi|229566009|gb|ACQ79860.1| methyltransferase [Beutenbergia cavernae DSM 12333]
          Length = 187

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 14/108 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +   + A  +     +L+LY G+G   L   +R    VL VE  + +    R N  
Sbjct: 28  VREAVFSALEARGQVADARVLDLYAGSGALGLEAASRGAQSVLLVESDRRAAAICRRNAD 87

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              ++ V  VR  +    Q +RR              + F  +  DPP
Sbjct: 88  TLGLSGVVSVR--AARVEQLLRRP-----------APHAFDLVLCDPP 122


>gi|288936243|ref|YP_003440302.1| hypothetical protein Kvar_3390 [Klebsiella variicola At-22]
 gi|290510701|ref|ZP_06550071.1| ribosomal RNA large subunit methyltransferase I [Klebsiella sp.
           1_1_55]
 gi|288890952|gb|ADC59270.1| Protein of unknown function methylase putative [Klebsiella
           variicola At-22]
 gi|289777417|gb|EFD85415.1| ribosomal RNA large subunit methyltransferase I [Klebsiella sp.
           1_1_55]
          Length = 400

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L     +V +V+ ++ +++ AR N+  N ++  
Sbjct: 216 RLATRRYVADKRVLNCFSYTGGFAVSALMGGCRQVTSVDTSQEALDVARQNVELNGLD-- 273

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
               +S  EF     R+  F  L+       +F  I +DPP+   +    +G  + Y  I
Sbjct: 274 ----LSKAEFV----RDDVFKLLRKYRDQGEKFDVIVMDPPKFVENKSQLMGACRGYKDI 325


>gi|191639206|ref|YP_001988372.1| 16S RNA methylase [Lactobacillus casei BL23]
 gi|190713508|emb|CAQ67514.1| 16S RNA methylase [Lactobacillus casei BL23]
 gi|327383284|gb|AEA54760.1| Hypothetical conserved protein [Lactobacillus casei LC2W]
 gi|327386467|gb|AEA57941.1| Hypothetical conserved protein [Lactobacillus casei BD-II]
          Length = 198

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 21/121 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
             ++  +LA      G +L++  G G   L LA+HF   +V   ++ + ++  A+ N   
Sbjct: 46  RVLIATILAEELP-AGPILDVGTGYGPIGLALAKHFPDRQVTMSDVNERALALAQRNATD 104

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++NV IV  S                    D    +F  I  +PP         G++ 
Sbjct: 105 NAISNVTIVESSM------------------YDQIDGQFGVIVTNPPIRAGKTIVSGILA 146

Query: 314 A 314
            
Sbjct: 147 G 147


>gi|297619725|ref|YP_003707830.1| hypothetical protein Mvol_1200 [Methanococcus voltae A3]
 gi|297378702|gb|ADI36857.1| protein of unknown function Met10 [Methanococcus voltae A3]
          Length = 379

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 48/120 (40%), Gaps = 21/120 (17%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +         +++++CG G +S+   +   ++ ++++   +++  + NI  N++ N    
Sbjct: 226 IMQKIEKDDIIIDMFCGVGPYSIAC-KDAKKIYSIDVNPEAIKLLKENIKLNNLEN---- 280

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYPHILY 320
                         +    L+D+   + +   I ++ P+      D  + +V+    I Y
Sbjct: 281 --------------KIIPILEDVRKVNLKGNRIIMNLPKYANQFVDKALELVEDGGTIHY 326


>gi|151556943|gb|AAI49705.1| TRMT12 protein [Bos taurus]
 gi|296480674|gb|DAA22789.1| tRNA wybutosine-synthesizing protein 2 homolog [Bos taurus]
          Length = 438

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 15/194 (7%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    +   A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 99  CLEVSRWVEGRGVTWSAELEAD--LPRSWQRHGDLLLLSEDCFQAKQWRHLEPELWETVA 156

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++            L  D+        G    +   +   SF      
Sbjct: 157 SALGAQRLAKRGRVSPDSTRTPAVSLLLGDHGWVEHVDNGIRYKFDVTQCMFSF------ 210

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L   +      V A E    +V A R N
Sbjct: 211 --GNITEKLRVASLPCAGEVLVDLYAGIGYFTLPFLVHAEAAFVHACEWNPHAVVALRNN 268

Query: 251 IAANHVNNVKIVRM 264
           +  N V +   +  
Sbjct: 269 LELNGVADRCQIHF 282


>gi|321460864|gb|EFX71902.1| hypothetical protein DAPPUDRAFT_308692 [Daphnia pulex]
          Length = 336

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 76/208 (36%), Gaps = 30/208 (14%)

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR--------------LLDDAWR----ECAI 136
           +L+  +R  L ++  +  +  + ++  + H+              L D++W+    E   
Sbjct: 23  QLKQSIRDFLVEVGQVPDEDIEKLIQEVPHKWERHGDLIIVPQRSLKDESWKLFEKEVYE 82

Query: 137 RLRDALH----ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           R+   L     ARK  +      +     L  D    + T       +   +  F+  N 
Sbjct: 83  RICQTLKINRIARKNPVNPNSYRSSNVELLWGDNGIVQHTDNKIKYQWDVTKCMFSIGN- 141

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYN 250
            I   +    +A+       +++L+ G G F L   +      V A E+   SVEA + N
Sbjct: 142 -ITEKLR---IASFDCSNEVVVDLFAGIGYFVLPYLIHAKAKHVHACEMNPASVEALKGN 197

Query: 251 IAANHV-NNVKIVRMSSKEFTQAMRRER 277
           + +N+V +   I    ++        +R
Sbjct: 198 LKSNNVEDRCTIYFGDNRTTAPTNVADR 225


>gi|284925537|gb|ADC27889.1| putative SAM-dependent methyltransferase [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 37  QNKSIIDIGCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|283955683|ref|ZP_06373176.1| hypothetical protein C1336_000040094 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792908|gb|EFC31684.1| hypothetical protein C1336_000040094 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 37  QNKSIIDIGCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|269102027|ref|ZP_06154724.1| Polypeptide chain release factor methylase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161925|gb|EEZ40421.1| Polypeptide chain release factor methylase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 282

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 29/143 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I   R++    L VA  TLI R                ++E  L         +L+L  G
Sbjct: 75  IIGVREFWSLPLKVAPSTLIPRPD-----------TERLVELALDKIPAQPCQVLDLGTG 123

Query: 220 NGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L +A  R    V  +++ + + + A  N A    NNV+ +  S            
Sbjct: 124 TGAIALAIASERPDITVTGIDLRQEAAQLATENGATLGFNNVQFLAGS------------ 171

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                        +F  I  +PP
Sbjct: 172 ----WYSPLAEIQQFAVIVSNPP 190


>gi|241764818|ref|ZP_04762824.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax
           delafieldii 2AN]
 gi|241365650|gb|EER60370.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Acidovorax
           delafieldii 2AN]
          Length = 236

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   ML+            +LE+  G+G  + +LA   + V+++EI     E AR N+
Sbjct: 83  PRLEARMLQ---DLRLLPTDRVLEIGAGSGYMAALLAHRAEHVVSLEIVPALAEMARDNL 139

Query: 252 AANHVNNVKIVRMS 265
               + N  +    
Sbjct: 140 QRAGIANAHVRVSD 153


>gi|228985990|ref|ZP_04146135.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773702|gb|EEM22123.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 261

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFQEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  ++++ 
Sbjct: 88  HENVTFVAGNAEDL 101


>gi|197105360|ref|YP_002130737.1| SAM dependent methyltransferase [Phenylobacterium zucineum HLK1]
 gi|196478780|gb|ACG78308.1| SAM dependent methyltransferase [Phenylobacterium zucineum HLK1]
          Length = 341

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 10/111 (9%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +     +A       +L L+   G  SLV+A     V  V+ +K +V  AR N  A+ 
Sbjct: 157 ERVRAHAGSAGSDGPPRVLNLFGYTGVASLVMAAAGAAVTHVDASKKAVAWARENAEASK 216

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           +++ + +R   ++  + ++RE              ++  I +DPP+ G   
Sbjct: 217 LSD-RPIRWIVEDARRYVQREVR---------RGSKYDGIILDPPKYGRGP 257


>gi|94496504|ref|ZP_01303081.1| 3-demethylubiquinone-9 3-methyltransferase [Sphingomonas sp. SKA58]
 gi|94424250|gb|EAT09274.1| 3-demethylubiquinone-9 3-methyltransferase [Sphingomonas sp. SKA58]
          Length = 248

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 12/129 (9%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVK 260
           ++         +L+L CG G  S+  AR   +V   +IA   +  AR N   N V     
Sbjct: 42  IMRLLPPPPARILDLGCGGGWTSIFYARLGYQVTGQDIAPDMIAVARDNARINDVGSRTD 101

Query: 261 IVRM-----------SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            +              +  F  ++    +          + +   I +          + 
Sbjct: 102 FLCGDFEHMELGAQYDAAIFFDSLHHAEDEALAIHAAWRALKPGGILITHEPGEGHSQSA 161

Query: 310 GMVQAYPHI 318
             + A    
Sbjct: 162 ESIAAMARF 170


>gi|91775089|ref|YP_544845.1| hypothetical protein Mfla_0736 [Methylobacillus flagellatus KT]
 gi|91709076|gb|ABE49004.1| conserved hypothetical protein 95 [Methylobacillus flagellatus KT]
          Length = 185

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 3/107 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+     G     L+L+ G G      L+R    V+ VE + P+ ++ + N +
Sbjct: 34  VRQTVFNWLGQDMHGR--RCLDLFAGTGAMGFEALSRGASAVVLVEKSAPAAKSLQQNQS 91

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
                  +I++  + +F    R   +   L       +  K +   P
Sbjct: 92  LLKAGAARILQQDAVQFLAQNRERFDVIFLDPPYQQGWLPKLLPCLP 138


>gi|15891740|ref|NP_357412.1| hypothetical protein Atu3189 [Agrobacterium tumefaciens str. C58]
 gi|15160206|gb|AAK90197.1| hypothetical protein Atu3189 [Agrobacterium tumefaciens str. C58]
          Length = 247

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 198 MLEWVLAATKGI-QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           ML         + +G +LE   G    S+ LA  F+ V+ VE++      A  N    +V
Sbjct: 47  MLGRAEQHFGPLGKGRVLEFGAGVARMSIPLASRFEAVVGVELSPDMRAEALKNCQLYNV 106

Query: 257 NNVKIVRMS 265
           +NV++V   
Sbjct: 107 SNVEMVPSD 115


>gi|322383636|ref|ZP_08057387.1| ribosomal protein L11 methyltransferase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151848|gb|EFX44791.1| ribosomal protein L11 methyltransferase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 333

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 127 LDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN- 185
           +D      +IR  D         +       TK    +   +E    +   +I       
Sbjct: 104 IDTGNPIFSIRQVDDESWANEWKKYFKPIRVTKRLTIKPTWEE-YEPSTDEIILELDPGM 162

Query: 186 SF---TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAK 241
           +F   T     + + +LE V+        D++++  G+G  S+  A+   + VLA+++  
Sbjct: 163 AFGTGTHATTSLCLKILEQVVR----GGEDVIDVGTGSGILSIAAAKLGAEHVLAIDLDP 218

Query: 242 PSVEAARYNIAANHVNNVKIVR 263
            +V++A  N   N + +  +VR
Sbjct: 219 VAVKSAGENSKLNGMQSRIMVR 240


>gi|296133842|ref|YP_003641089.1| Methyltransferase type 11 [Thermincola sp. JR]
 gi|296032420|gb|ADG83188.1| Methyltransferase type 11 [Thermincola potens JR]
          Length = 249

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L CG GN +L  ARH  +V  ++++   ++ AR   AA ++  V+ ++   +E 
Sbjct: 41  VLDLACGTGNTTLPFARHSIKVYGLDLSGAMLDKAREKAAAENLT-VEFLQQDMREL 96


>gi|268326458|emb|CBH40046.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 12 family [uncultured archaeon]
          Length = 276

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 38/76 (50%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V+        ++L++  G G  ++ +AR  ++V  V+ +K  ++    + AA  + N++ 
Sbjct: 55  VIKDFIEPDFEVLDIGAGPGTLTIPIARLVNKVTVVDPSKGMIKVLEESAAATGIENIET 114

Query: 262 VRMSSKEFTQAMRRER 277
           +  S +E   A  RE+
Sbjct: 115 INKSWQEIDDAKIREK 130


>gi|228911167|ref|ZP_04074973.1| Protein hemK [Bacillus thuringiensis IBL 200]
 gi|228848530|gb|EEM93378.1| Protein hemK [Bacillus thuringiensis IBL 200]
          Length = 283

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 44/164 (26%)

Query: 164 RDYVDERLTVAGRTLIYRQIEN---------------SFTQPNAGI------NVHM---- 198
           R+ ++E    +    I++ +E                SF   N  +         +    
Sbjct: 44  REEINEEQEASFTEFIHKHVEGIPIQYMIGYEMFYGRSFF-VNEEVLIPRPETEELIVGV 102

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  +   
Sbjct: 103 LERIERHFGDKELHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKSLGA 162

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V                      L   D    +   +  +PP
Sbjct: 163 E-VTFYHGDL---------------LSPFDKTGQKLDVVVSNPP 190


>gi|160900149|ref|YP_001565731.1| 3-demethylubiquinone-9 3-methyltransferase [Delftia acidovorans
           SPH-1]
 gi|151500322|gb|ABS12101.1| ubiquinone biosynthesis O-methyl-transferase [Delftia acidovorans]
 gi|160365733|gb|ABX37346.1| ubiquinone biosynthesis O-methyltransferase [Delftia acidovorans
           SPH-1]
          Length = 240

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 59/154 (38%), Gaps = 10/154 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+W+ A        +L++ CG G  +  +AR     V+ +++A  ++  A+ +
Sbjct: 35  HQINPLRLDWIDAQAPLKGRRVLDVGCGGGILADSMARKGAREVVGIDLATKALRVAQLH 94

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                  N+    +S +   +      +     ++  H     ++           A   
Sbjct: 95  ALETGTPNIHYHEVSVERLAEEQPGSFDVVTCMEMLEHVPDPASVVA---------ACAE 145

Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
           +V+    + + + N  +    L+I++  + ++ +
Sbjct: 146 LVKPGGWVFFSTINRSAKAFGLAIVAAEYLLKMI 179


>gi|15668459|ref|NP_247257.1| hypothetical protein MJ_0284 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2495889|sp|Q57732|Y284_METJA RecName: Full=Uncharacterized protein MJ0284
 gi|1499066|gb|AAB98272.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 219

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 17/115 (14%)

Query: 213 LLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +++L CG G   L +        R + ++I + S+EAA+ N    +V+ V    M  ++ 
Sbjct: 50  VIDLGCGTG--RLAIGSKILGAKRAIGIDIDRESIEAAKENAKKLNVD-VDFYCMDIRDV 106

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGMVQAYPHILY 320
                        +D D+     + +  +PP    +   D   +        I+Y
Sbjct: 107 DDEFLNNVL---GEDRDLK----RVVIQNPPFGAQKKHADRVFLDKALEIGDIIY 154


>gi|300786072|ref|YP_003766363.1| methyltransferase type 11 [Amycolatopsis mediterranei U32]
 gi|299795586|gb|ADJ45961.1| methyltransferase type 11 [Amycolatopsis mediterranei U32]
          Length = 264

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 199 LEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           L    AA  G+ G   LL++ CG G+ +L LA  F+  + ++  +  +  A    A   +
Sbjct: 30  LATAFAAQLGLDGSGRLLDVGCGPGSLTLPLAGSFEEAVGLDADEDMLAEAARLAADAGI 89

Query: 257 NNVKIVRMSSKEFTQAMRRER 277
            N + V   ++E    + R R
Sbjct: 90  GNCRWVHRRAEELPAGLGRFR 110


>gi|293375559|ref|ZP_06621833.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Turicibacter sanguinis PC909]
 gi|325836756|ref|ZP_08166223.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Turicibacter sp. HGF1]
 gi|292645776|gb|EFF63812.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Turicibacter sanguinis PC909]
 gi|325491134|gb|EGC93423.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Turicibacter sp. HGF1]
          Length = 283

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 39/214 (18%)

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
            + D A+  L+ H    +++      +   ++    Q Q+       K      YV++ +
Sbjct: 19  GKEDSAVKLLLMHVTGKESYE-----ILADMNMEVPQEQVEEFERSVKT-----YVEQNI 68

Query: 172 TVAGRTLIYRQIENSFTQPNAGI------NVHMLEWVL----AATKGIQGDLLELYCGNG 221
            V           + F   N  +         ++  VL        G    L+++  G+G
Sbjct: 69  PVQHIMGYETFFGHKFI-VNDDVLIPRFETEELVANVLSTYDDVFDGAAVKLVDVGTGSG 127

Query: 222 NFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
              + LA       V   E+++ ++E A+ N A     NV   +                
Sbjct: 128 AIGVTLAVEEPNMEVTVTELSEAALEVAKKNAANLGA-NVTFYQGDM------------- 173

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             L+ +     +F  +  +PP   L +    +V+
Sbjct: 174 --LQPLIERGLKFDILVSNPPYIPLTEDVDPLVK 205


>gi|227890128|ref|ZP_04007933.1| ribosomal protein L11 methyltransferase [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849303|gb|EEJ59389.1| ribosomal protein L11 methyltransferase [Lactobacillus johnsonii
           ATCC 33200]
          Length = 315

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              ++   +         +L++  G+G  ++  ++     VL  +I+  +V AA+ NIA 
Sbjct: 163 TTQLVLLAMERALVKPMSVLDVGTGSGILAIAASKLGASHVLGTDISDEAVTAAKENIAL 222

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           N+++N+ + + +  +           N L DI + 
Sbjct: 223 NNIDNIDVRKANLLKDINEKYDLIVANILADILLE 257


>gi|224493314|sp|B5XY38|RLMI_KLEP3 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
          Length = 400

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L     +V +V+ ++ +++ AR N+  N ++  
Sbjct: 216 RLATRRYVADKRVLNCFSYTGGFAVSALMGGCRQVTSVDTSQEALDVARQNVELNGLD-- 273

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
               +S  EF     R+  F  L+       +F  I +DPP+   +    +G  + Y  I
Sbjct: 274 ----LSKAEFV----RDDVFKLLRKYRDQGEKFDVIVMDPPKFVENKSQLMGACRGYKDI 325


>gi|218264487|ref|ZP_03478320.1| hypothetical protein PRABACTJOHN_04020 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221980|gb|EEC94630.1| hypothetical protein PRABACTJOHN_04020 [Parabacteroides johnsonii
           DSM 18315]
          Length = 291

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 15/108 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIA 252
              ++E V+      +  +L++  G+G  ++ L +H  +  V+A +I+  ++  AR N  
Sbjct: 105 TEELVEQVILDNADKKIKILDIGTGSGCIAVTLRKHLKKASVIATDISAEALVTARRNAK 164

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N+   V  ++    +               ++DI  +    I  +PP
Sbjct: 165 RNN-TTVTFIQTDILD-----------PEKAEMDI-PFILDVIVSNPP 199


>gi|311278709|ref|YP_003940940.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Enterobacter cloacae SCF1]
 gi|308747904|gb|ADO47656.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Enterobacter cloacae SCF1]
          Length = 310

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 73/209 (34%), Gaps = 23/209 (11%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I + F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINSRF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V  V+I+  ++  A  N
Sbjct: 126 ----------AGLIHHQPQHILDMCTGSGCIAIACAYAFPEAEVDGVDISPDALAVAERN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS-YRFKTIFVDPPRSGLDDAT 308
           I  +  ++NV  +R         ++ +        +D          +   P  GL   T
Sbjct: 176 IEEHGLIHNVTPIRSDLFRDLPQVQYDLIVTNPPYVDAEDMADLPGEYRHEPELGLASGT 235

Query: 309 VGMVQAYPHILYISCNPDSLCRDLSILST 337
            G ++    IL  +C PD L  D  ++  
Sbjct: 236 DG-LKLTRRIL--ACAPDYLSDDGILICE 261


>gi|297193672|ref|ZP_06911070.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151875|gb|EFH31393.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 217

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A        +L++ CG G+ S ++A    RV  ++++   V+ AR  ++A  +   + 
Sbjct: 39  LTAWLPPDPSSVLDVGCGTGSLSALVAEAGHRVTGIDLSPRMVDRARAKLSAAGLP-ARF 97

Query: 262 VRMSSK 267
           +   + 
Sbjct: 98  LVGDAA 103


>gi|212638661|ref|YP_002315181.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
 gi|212560141|gb|ACJ33196.1| SAM-dependent methyltransferase [Anoxybacillus flavithermus WK1]
          Length = 246

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++E  +A+    +  LL+L CG G  ++ LA     V  V++++  +  A+       V 
Sbjct: 25  LVERTVASYHNGK-RLLDLGCGTGELAIRLAEKGFDVTGVDLSEQMLTIAQMKAEERGV- 82

Query: 258 NVKIVRMSSKEFTQ 271
           N+   +   +EF  
Sbjct: 83  NLSFFQQDMREFGP 96


>gi|159040690|ref|YP_001539942.1| methyltransferase type 11 [Caldivirga maquilingensis IC-167]
 gi|157919525|gb|ABW00952.1| Methyltransferase type 11 [Caldivirga maquilingensis IC-167]
          Length = 262

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFT 270
            +L++  G G  ++ LA+   +V+ ++I++  +  A        V +NV  +   ++E +
Sbjct: 48  KILDVGSGVGRVAIPLAKLGFKVIGIDISQDFINEAIKRATREGVNDNVVFLLGDARELS 107

Query: 271 QAMRREREFN 280
             +R    FN
Sbjct: 108 SVIRHYAPFN 117


>gi|7800670|gb|AAF70111.1|AF257324_12 AknG [Streptomyces galilaeus]
          Length = 286

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 45/171 (26%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPS 243
           F      +   ++E            +L++ CG G      A       RV+ +++A+  
Sbjct: 28  FF---TPMGRRLVERAA---PAAGARVLDVGCGRGACVFPAAERVGPEGRVVGIDVAEAM 81

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E A    A      V++  M  +                  D   + F  +        
Sbjct: 82  IEEATKEAALRDAAMVELRVMDGEH----------------PDFAPHSFDVVLGSYS--- 122

Query: 304 LDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF---DQFP 351
                         ++++   P +L R   +LS    +   +     D FP
Sbjct: 123 --------------VIFLPDAPTALARYAPLLSPGGRLAFTSPVFSDDTFP 159


>gi|313225715|emb|CBY07189.1| unnamed protein product [Oikopleura dioica]
          Length = 1281

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 159  KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
            ++   +D +       G T      E ++   N+ +       +++         ++L C
Sbjct: 1038 EVIAGKDSLQTTHKEHGNTFHLDMGE-TYW--NSRLQEE--HKIMSELIDENSVCVDLCC 1092

Query: 219  GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            G G F++ +A+   R +A ++   S++  R N   N
Sbjct: 1093 GIGPFAIPIAKRGIRTIANDLNPDSIKWLRINAEIN 1128


>gi|301053621|ref|YP_003791832.1| methyltransferase [Bacillus anthracis CI]
 gi|300375790|gb|ADK04694.1| methyltransferase [Bacillus cereus biovar anthracis str. CI]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +LE ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N    
Sbjct: 28  AYLLLEKLVLQYAPPHSLILDLCCGTGHLTKKLIDNSFVVTGIDGSTQMIEYARQNA--- 84

Query: 255 HVNNVKIVRMSSKEF 269
              +   +   ++ F
Sbjct: 85  --PDAAFIVDDARYF 97


>gi|257054787|ref|YP_003132619.1| methylase of polypeptide chain release factors [Saccharomonospora
           viridis DSM 43017]
 gi|256584659|gb|ACU95792.1| methylase of polypeptide chain release factors [Saccharomonospora
           viridis DSM 43017]
          Length = 227

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 17/104 (16%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            +L   +     +   +L++  G+G  +++ A   + VLAV+I   ++EAAR N   N V
Sbjct: 49  ELLGGAVLDEVRVGDRVLDMGTGSGVNAVLAAAEAESVLAVDINPKALEAARDNARRNDV 108

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +   VR S              +   D+D    RF  I  DPP
Sbjct: 109 ADRIEVRHS--------------DVFSDVD---GRFDLIVFDPP 135


>gi|296810328|ref|XP_002845502.1| S-adenosylmethionine-dependent methyltransferase [Arthroderma otae
           CBS 113480]
 gi|238842890|gb|EEQ32552.1| S-adenosylmethionine-dependent methyltransferase [Arthroderma otae
           CBS 113480]
          Length = 366

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 13/171 (7%)

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           ++   R +PLL   L +   L S  ++ +  L  +    D   +   + R  L  R    
Sbjct: 9   LLRARRTDPLLPLLLRECRDLCSARNE-LRWLTEYAQSRDTDDQAGWKWRQRL--RSLVR 65

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           Q         I  D+ + D  +      LI R    S+T     I  H+L          
Sbjct: 66  QRAAGKPLQYILGDQPFGDLEILCKEGVLIPRPDTESYT---TRITQHLLAE-HRRYPRQ 121

Query: 210 QGDLLELYCGNGNFSLVL------ARHFDRVLAVEIAKPSVEAARYNIAAN 254
              ++++  G G   L+L      +     V+ V+I+  ++  A+ N+  N
Sbjct: 122 SVRIIDICTGTGCIPLLLHSLLAPSIPALSVIGVDISPTALSLAKKNLEHN 172


>gi|257387512|ref|YP_003177285.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257169819|gb|ACV47578.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 250

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               +L++ CGNG+  L  A        V+I+KP++E  R   A   ++ V      + +
Sbjct: 45  PTDRVLDVGCGNGSHVLFFAEQGLSAAGVDISKPAIELGRQRAAETGLD-VDFKTGDAAD 103

Query: 269 FT 270
            +
Sbjct: 104 LS 105


>gi|195569943|ref|XP_002102968.1| GD19221 [Drosophila simulans]
 gi|194198895|gb|EDX12471.1| GD19221 [Drosophila simulans]
          Length = 629

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 21/126 (16%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           R    S+               LA        +L+ +CG G  ++  A    RV+AV+I 
Sbjct: 438 RLDRESWFSVTPEKIAKQTARRLACDV-----ILDAFCGCGGNAIQFANTCGRVIAVDID 492

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +  A++N     V + ++ +     +F    +                R   +F+ P
Sbjct: 493 AEKLAMAKHNAGIYGVAHKIEFIHADFLQFAATTK---------------LRPNVVFLSP 537

Query: 300 PRSGLD 305
           P  G D
Sbjct: 538 PWGGPD 543


>gi|148700826|gb|EDL32773.1| mCG18000 [Mus musculus]
          Length = 819

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    ++ AR N     V + ++ +         
Sbjct: 656 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFICGDFLLLAP 715

Query: 272 AMRREREF 279
            ++ +  F
Sbjct: 716 CLKADVVF 723


>gi|67923860|ref|ZP_00517319.1| Magnesium protoporphyrin O-methyltransferase [Crocosphaera watsonii
           WH 8501]
 gi|67854289|gb|EAM49589.1| Magnesium protoporphyrin O-methyltransferase [Crocosphaera watsonii
           WH 8501]
          Length = 229

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN--H 255
           ++ W+ A        L +  CG G+ SL LA+   ++ A +I++  V  A+     +   
Sbjct: 50  VVGWLKADGNLHSLSLCDAGCGVGSLSLPLAQEGAKIFASDISEKMVTEAKERAQKDLKD 109

Query: 256 VNNVKIVRMSSKEFT 270
            +NV       +  T
Sbjct: 110 ASNVTFAVQDLESLT 124


>gi|257866503|ref|ZP_05646156.1| rRNA small subunit methyltransferase C [Enterococcus casseliflavus
           EC30]
 gi|257872981|ref|ZP_05652634.1| rRNA small subunit methyltransferase C [Enterococcus casseliflavus
           EC10]
 gi|257876107|ref|ZP_05655760.1| rRNA small subunit methyltransferase C [Enterococcus casseliflavus
           EC20]
 gi|257800461|gb|EEV29489.1| rRNA small subunit methyltransferase C [Enterococcus casseliflavus
           EC30]
 gi|257807145|gb|EEV35967.1| rRNA small subunit methyltransferase C [Enterococcus casseliflavus
           EC10]
 gi|257810273|gb|EEV39093.1| rRNA small subunit methyltransferase C [Enterococcus casseliflavus
           EC20]
          Length = 201

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
            D+      + G+   +      F++        +L       +  +G LL++ CG G  
Sbjct: 14  HDFEQWSFELRGKNFHFVTDSGVFSRDTVDYGSRVLIDAFEWGELPEGSLLDVGCGYGPV 73

Query: 224 SLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
            L LA    R V  ++I + +V+ A+ N   N +  V I +
Sbjct: 74  GLALAYASQRPVEMIDINQRAVDLAKGNAQRNGIEQVDIHQ 114


>gi|257421857|ref|ZP_05598847.1| protoporphyrinogen oxidase hemK [Enterococcus faecalis X98]
 gi|257163681|gb|EEU93641.1| protoporphyrinogen oxidase hemK [Enterococcus faecalis X98]
 gi|315155438|gb|EFT99454.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0043]
          Length = 277

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|229527115|ref|ZP_04416509.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           12129(1)]
 gi|229335346|gb|EEO00829.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           12129(1)]
          Length = 199

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+           L+L+ G+G      A R  ++V  +E+   + +  + N+ 
Sbjct: 46  VKETLFNWLAQEVPNT--RCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQ 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 104 SLKAENIELIHTDALAFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 148

Query: 312 VQ-----AYPHILYISC 323
           ++     A   ++YI C
Sbjct: 149 LEQNGWLAPQAMIYIEC 165


>gi|256394725|ref|YP_003116289.1| methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
 gi|256360951|gb|ACU74448.1| Methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
          Length = 275

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +L++ CG G  ++ LA       V AVEI   ++  A+   A     NV+      
Sbjct: 46  ILDVGCGPGTITVDLAERVAGGTVTAVEITADALALAQDEAARRGTPNVRFAVADV 101


>gi|194290446|ref|YP_002006353.1| protein-l-isoaspartate o-methyltransferase [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224281|emb|CAQ70290.1| Protein-L-isoaspartate O-methyltransferase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 208

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 28/54 (51%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            +LE+  G+G  + +LA     VL V+I    VE AR N+A   V NV +   +
Sbjct: 71  TVLEIGAGSGYMAALLAHRARHVLTVDIVPELVELARTNLANAGVTNVDVAEGN 124


>gi|154324226|ref|XP_001561427.1| hypothetical protein BC1G_00512 [Botryotinia fuckeliana B05.10]
 gi|150842741|gb|EDN17934.1| hypothetical protein BC1G_00512 [Botryotinia fuckeliana B05.10]
          Length = 190

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNG--NFSLVLARHFDRVLAVEI 239
            ++++       +   + +   ++T   +  +++L+ G G  + +  L+  +  V+A+E 
Sbjct: 2   TDDAWFGVTPEPVATQIAQDYASSTSPTKTTIIDLFAGAGGNSIAFALSNRWAHVIAIEK 61

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
               +  A  N       N+  V     E+ +
Sbjct: 62  DPSVIACAENNAYVYGATNITWVNGDCFEYLK 93


>gi|148656041|ref|YP_001276246.1| Mg-protoporphyrin IX methyl transferase [Roseiflexus sp. RS-1]
 gi|148568151|gb|ABQ90296.1| magnesium protoporphyrin O-methyltransferase [Roseiflexus sp. RS-1]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           A     +LEWV A  +     + L+  CG G FS  LA+H   V AV+IA     A    
Sbjct: 50  ARAEAWLLEWVSATGRDPHTLNALDAGCGTGMFSTTLAQHGFSVTAVDIAPQMTAATAER 109

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
           + A      V  +                F+ L      ++ 
Sbjct: 110 VRAAGVAQRVTCLTGDIDAVAGTFDVVACFDVLIHYPQPAFD 151


>gi|86153950|ref|ZP_01072153.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|121612352|ref|YP_999976.1| hypothetical protein CJJ81176_0288 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157414558|ref|YP_001481814.1| hypothetical protein C8J_0238 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|167004932|ref|ZP_02270690.1| hypothetical protein Cjejjejuni_01415 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85842911|gb|EAQ60123.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87250033|gb|EAQ72991.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|157385522|gb|ABV51837.1| hypothetical protein C8J_0238 [Campylobacter jejuni subsp. jejuni
           81116]
          Length = 239

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 37  QNKSIIDIGCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|332193981|gb|AEE32102.1| S-adenosylmethionine-dependent methyltransferase domain-containing
           protein [Arabidopsis thaliana]
          Length = 538

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 68/202 (33%), Gaps = 9/202 (4%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           Q   +TS  ++     +   +          R +  L       ++ G   +    L + 
Sbjct: 270 QSLDITSLGEEGTGAYVVSSVRKAKKESRRSRAKKKLLNSYTGTEMKGVPEEYSPILGKY 329

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           +    L  +      +  E  +      +          AT+  +G +++ + G G  ++
Sbjct: 330 WCQRYLLFSRFDEGIKMDEEGWFSVTPELIAK-----HHATRCNEGIVIDCFTGVGGNAI 384

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF--NRL 282
             A     V+A+++    ++ A++N A   V + +  V+    +    ++    F     
Sbjct: 385 QFASRSHYVIAIDLDPKKLDLAKHNAAIYGVADKIDFVKGDFFDLAHNLKAGTVFLSPPW 444

Query: 283 KDID-IHSYRFKTIFVDPPRSG 303
              D + +  +    +  PR G
Sbjct: 445 GGPDYLKASTYDMKTMLRPRDG 466


>gi|325960210|ref|YP_004291676.1| type 11 methyltransferase [Methanobacterium sp. AL-21]
 gi|325331642|gb|ADZ10704.1| Methyltransferase type 11 [Methanobacterium sp. AL-21]
          Length = 275

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +L+ +          +L++ CG G  +L +A+H   V  ++++   +E          
Sbjct: 54  EKLLDKIKTHPNNS---VLDIGCGEGTITLEIAKHVSEVTCIDLSTEMLEILDQKAQTEG 110

Query: 256 VNNVKIVRMSSKEFTQAMRRERE 278
           + N+  ++    + +     E++
Sbjct: 111 IKNLTYLQGDMMDISLESLGEKD 133


>gi|224142165|ref|XP_002324429.1| predicted protein [Populus trichocarpa]
 gi|222865863|gb|EEF02994.1| predicted protein [Populus trichocarpa]
          Length = 213

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARY 249
             I   ML     +   +   ++ +  CG G      +    ++V+ ++I   S+E A  
Sbjct: 30  PHIASRMLYTAENSLGDVSNKIVADFGCGCGTLGAAASLMGAEQVIGIDIDSESLEIASL 89

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
           N     ++ +  ++   +                          T+ ++PP    R+G D
Sbjct: 90  NAEDLELD-INFIQCDIRNLV----------------WRGPIVDTVVMNPPFGTRRNGAD 132

Query: 306 DATV-GMVQAYPHILY 320
              +   ++     +Y
Sbjct: 133 MDFLSAALKIASRAVY 148


>gi|219115329|ref|XP_002178460.1| magnesium-protoporphyrin IX methyltransferase [Phaeodactylum
           tricornutum CCAP 1055/1]
 gi|217410195|gb|EEC50125.1| magnesium-protoporphyrin IX methyltransferase [Phaeodactylum
           tricornutum CCAP 1055/1]
          Length = 258

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +L+W+ A        + +  CG G+ ++ LA+   +V A +I+      A        
Sbjct: 80  QKILKWIAADGDIDGKSVCDCGCGVGSLAIPLAQMGAKVSASDISDAMSTEAARRAGELG 139

Query: 256 VNNVKIVRMSSKEFT 270
           V          +  +
Sbjct: 140 VK-ADFYTSDLESVS 153


>gi|42571775|ref|NP_973978.1| WW domain-containing protein [Arabidopsis thaliana]
          Length = 538

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 68/202 (33%), Gaps = 9/202 (4%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           Q   +TS  ++     +   +          R +  L       ++ G   +    L + 
Sbjct: 268 QSLDITSLGEEGTGAYVVSSVRKAKKESRRSRAKKKLLNSYTGTEMKGVPEEYSPILGKY 327

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           +    L  +      +  E  +      +          AT+  +G +++ + G G  ++
Sbjct: 328 WCQRYLLFSRFDEGIKMDEEGWFSVTPELIAK-----HHATRCNEGIVIDCFTGVGGNAI 382

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF--NRL 282
             A     V+A+++    ++ A++N A   V + +  V+    +    ++    F     
Sbjct: 383 QFASRSHYVIAIDLDPKKLDLAKHNAAIYGVADKIDFVKGDFFDLAHNLKAGTVFLSPPW 442

Query: 283 KDID-IHSYRFKTIFVDPPRSG 303
              D + +  +    +  PR G
Sbjct: 443 GGPDYLKASTYDMKTMLRPRDG 464


>gi|319781461|ref|YP_004140937.1| hypothetical protein Mesci_1732 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167349|gb|ADV10887.1| Conserved hypothetical protein CHP00095 [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 364

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 24/208 (11%)

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI---CLDRDY 166
           L S + Q +     +R++    +    +   A    +      G  ++  I      +  
Sbjct: 87  LDSGTGQKLEQYGPYRIVRPEGQAIWQKALPAKEWERADAVFTGDTDEEGIGRWRFPKLP 146

Query: 167 VDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNG 221
           + E   +    + Y     SF           H   M   + AA + ++  +L L+   G
Sbjct: 147 LGETWPMKHDGIDYLGRFTSFRHVGVFPEQASHWDHMAGLIAAAKRPVK--VLNLFGYTG 204

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREF 279
             SLV AR    V  V+ +K ++  AR N     + +  ++ +   + +F      ERE 
Sbjct: 205 LASLVAARAGAEVTHVDASKKAIGWARENQEMAGLGSKPIRWIVDDAVKF-----AEREE 259

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            R         R+  I  DPP  G    
Sbjct: 260 RR-------GSRYDIILFDPPAYGRGPK 280


>gi|254496396|ref|ZP_05109277.1| 3-demethylubiquinone-9 3-methyltransferase [Legionella drancourtii
           LLAP12]
 gi|254354387|gb|EET13041.1| 3-demethylubiquinone-9 3-methyltransferase [Legionella drancourtii
           LLAP12]
          Length = 230

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 30/66 (45%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L+++          +L++ CG G     +A+   +V  ++    +++AA+ + 
Sbjct: 33  HDINETRLQFIAQHVNLTDVSVLDIGCGGGILCEAMAKSGAKVTGIDAECEAIQAAQEHA 92

Query: 252 AANHVN 257
            +N + 
Sbjct: 93  KSNDLA 98


>gi|242398329|ref|YP_002993753.1| Ribosomal RNA small subunit methyltransferase C [Thermococcus
           sibiricus MM 739]
 gi|242264722|gb|ACS89404.1| Ribosomal RNA small subunit methyltransferase C [Thermococcus
           sibiricus MM 739]
          Length = 195

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 17/111 (15%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +L+L CG G   +V +R  D  +  +I K +V  A+ N+  N+V             
Sbjct: 57  NWQVLDLGCGYGAIGIVASRFVDYAVMTDINKRAVSIAKKNLKINNV------------- 103

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
              M  E  +  L +  +   RF +I  +PP     D    +V   P+ LY
Sbjct: 104 ---MNAEVRWGHLYEP-VKGERFHSIITNPPVHAGKDILREIVINAPYHLY 150


>gi|225389050|ref|ZP_03758774.1| hypothetical protein CLOSTASPAR_02795 [Clostridium asparagiforme
           DSM 15981]
 gi|225044872|gb|EEG55118.1| hypothetical protein CLOSTASPAR_02795 [Clostridium asparagiforme
           DSM 15981]
          Length = 188

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 13/105 (12%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G   +  L+R     + VE    +V+  R N++   + +  +V  +       
Sbjct: 46  LDLFSGSGAIGIEALSRGASLAVLVENNPKAVDCIRENLSRTKLEDRAVVMGN------- 98

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQAYP 316
                  + L+ ++  +Y F  IF+DPP   G +   +  +   P
Sbjct: 99  ----DVISSLRKLEGKNYVFDIIFMDPPYNKGWEQQVLTYLSGSP 139


>gi|195348905|ref|XP_002040987.1| GM15294 [Drosophila sechellia]
 gi|194122592|gb|EDW44635.1| GM15294 [Drosophila sechellia]
          Length = 629

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 21/126 (16%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           R    S+               LA        +L+ +CG G  ++  A    RV+AV+I 
Sbjct: 438 RLDRESWFSVTPEKIAKQTARRLACDV-----ILDAFCGCGGNAIQFANTCGRVIAVDID 492

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +  A++N     V + ++ +     +F    +                R   +F+ P
Sbjct: 493 AEKLAMAKHNAGIYGVAHKIEFIHADFLQFAATTK---------------LRPNVVFLSP 537

Query: 300 PRSGLD 305
           P  G D
Sbjct: 538 PWGGPD 543


>gi|167625122|ref|YP_001675416.1| HemK family modification methylase [Shewanella halifaxensis
           HAW-EB4]
 gi|167355144|gb|ABZ77757.1| modification methylase, HemK family [Shewanella halifaxensis
           HAW-EB4]
          Length = 280

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 21/157 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R+  +V A++  + +V  A+ N A
Sbjct: 98  TEILVETALNLPLAENAKVLDLGTGTGAIALSLAHERNEWQVCAIDKVEDAVALAKVNRA 157

Query: 253 ANHVNNVKIVR---MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
              +  V + +     + E             + + D H  +         R     A  
Sbjct: 158 NLKLEQVDVFQSDWFDAVECYDFNLIVSNPPYIDEEDEHLSQGDV------RFEPQSALT 211

Query: 310 GMVQAYPHILYISCNPDSLCRD------LSILSTTHT 340
             ++ +  + +I        RD        +L   + 
Sbjct: 212 APLKGFADLFHI----AESARDYLAPGGYLLLEHGYQ 244


>gi|225445168|ref|XP_002284097.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297738789|emb|CBI28034.3| unnamed protein product [Vitis vinifera]
          Length = 220

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARY 249
             I   ML     +   +   ++ +  CG G   +  A    + V+ ++I   S+E A  
Sbjct: 30  PHIASRMLYTAENSFGDVSNKVVADFGCGCGTLGVAAALLGAEHVIGLDIDPQSLEIASL 89

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
           N     ++ +  V                    K++        T+ ++PP    + G D
Sbjct: 90  NAEDLELD-MNFVHCDV----------------KNLGWRGQIVDTVVMNPPFGTRKKGAD 132

Query: 306 DATVG-MVQAYPHILY 320
              +   ++     +Y
Sbjct: 133 MDFLAVALKVASQAVY 148


>gi|148244517|ref|YP_001219211.1| hypothetical protein COSY_0362 [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326344|dbj|BAF61487.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 195

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 11/117 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
               L+L CG G   L +A+      V  V+    +VE +  N   N ++N+++    + 
Sbjct: 55  DDKCLDLGCGYGPIGLAVAKSCPKTEVHMVDKDFIAVELSNINAKLNRIDNIQVYLSDA- 113

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
            F    + +     L ++     R +   +             +++    I ++S N
Sbjct: 114 -FLSVNKTDYFDQVLSNVPAKVGREQLSIIL-------YDAYDVLKPGGKITFVSIN 162


>gi|47225350|emb|CAG09850.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 391

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           E +  +    +G+ +++LY G G F+L   +      V A E    +V+A + N+  N V
Sbjct: 197 EKLRVSQFDCRGETVVDLYAGIGYFTLPYLVHAKARHVHACEWNPEAVKALQKNLVTNGV 256

Query: 257 -NNVKIVRMSSKEF 269
             +  I    +++ 
Sbjct: 257 SEHCTIHPGDNRKL 270


>gi|56419633|ref|YP_146951.1| hypothetical protein GK1098 [Geobacillus kaustophilus HTA426]
 gi|56379475|dbj|BAD75383.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 198

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 14/94 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
           G+ L+L+ G+G   +  L+R  +RV+ V+  + +V+  R N+AA  +    +I    ++ 
Sbjct: 43  GNGLDLFAGSGGLGIEALSRGIERVIFVDQDRKAVQTVRKNVAACGLEKRAEIYCNDAE- 101

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                        LK +     RF  IF+DPP  
Sbjct: 102 -----------RALKAVAKRGLRFAVIFLDPPYK 124


>gi|186687241|ref|YP_001870384.1| methyltransferase type 11 [Nostoc punctiforme PCC 73102]
 gi|186469544|gb|ACC85343.1| Methyltransferase type 11 [Nostoc punctiforme PCC 73102]
          Length = 278

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAA 247
           +  I   ++E+           +L++  G G  +L  A+      RV+ V+I+   +E A
Sbjct: 31  HPRIAHRLVEYA---HIRPGQQVLDIATGTGMVALEAAQIVGAEGRVIGVDISTGMLEQA 87

Query: 248 RYNIAANHVNNVKIVRMSSKEF 269
           R  +AA  ++NV+     ++  
Sbjct: 88  RRKVAALGLSNVEFQLADAEAL 109


>gi|326627242|gb|EGE33585.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 271

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VL    G +  +L+  CG G  ++ +A    +V   +++   +  AR    A  V  
Sbjct: 38  LDRVLEEIGGRKLRVLDAGCGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSK 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++  +++    +    + 
Sbjct: 98  DMHFIQCPAQDVASHLESPVDL 119


>gi|320159468|ref|YP_004172692.1| putative methyltransferase [Anaerolinea thermophila UNI-1]
 gi|319993321|dbj|BAJ62092.1| putative methyltransferase [Anaerolinea thermophila UNI-1]
          Length = 255

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N    +  +E          G +L+  C  G  ++ LA+   +    +++   +  AR 
Sbjct: 17  VNWEQRLK-VELPFLLRHLPHGRVLDAACATGWHAIALAQQGFQTAGADLSPQMIAVARR 75

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           N  A  V  +        +  +A      F+ L
Sbjct: 76  NAQAAGVT-LPFEVAGFGDLARAFAASLPFDGL 107


>gi|315168547|gb|EFU12564.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1341]
          Length = 277

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|257090699|ref|ZP_05585060.1| modification methylase hemK [Enterococcus faecalis CH188]
 gi|312905240|ref|ZP_07764360.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0635]
 gi|256999511|gb|EEU86031.1| modification methylase hemK [Enterococcus faecalis CH188]
 gi|310631477|gb|EFQ14760.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0635]
 gi|315579265|gb|EFU91456.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0630]
          Length = 277

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|227519761|ref|ZP_03949810.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis TX0104]
 gi|227072849|gb|EEI10812.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis TX0104]
          Length = 277

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|254468405|ref|ZP_05081811.1| 3-demethylubiquinone-9 3-O-methyltransferase [beta proteobacterium
           KB13]
 gi|207087215|gb|EDZ64498.1| 3-demethylubiquinone-9 3-O-methyltransferase [beta proteobacterium
           KB13]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 58/144 (40%), Gaps = 15/144 (10%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   + ++       + ++L++ CG G  +  +A+    V  ++ +  +++ A+ + 
Sbjct: 34  HDINPLRVNYINDLFPLNEKNILDVGCGGGILAESMAKLGGNVTGIDQSDIAIKIAKLHA 93

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N+++ +    ++ ++F +    + +     ++  H     +I           +    
Sbjct: 94  KENNLS-IDYKLLNIEDFLKKDSNKFDVITCLEMIEHVPDPASII---------KSCSKK 143

Query: 312 VQAYPHILYISCNPDSLCRDLSIL 335
           ++     LY+S    ++ R+L   
Sbjct: 144 LKKNGR-LYVS----TINRNLKAF 162


>gi|169627497|ref|YP_001701146.1| methyltransferase [Mycobacterium abscessus ATCC 19977]
 gi|169239464|emb|CAM60492.1| Possible methyltransferase [Mycobacterium abscessus]
          Length = 232

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A   ++G++L+  CG    SL LA      + ++ A  ++E A+   A   + N    
Sbjct: 44  LIAEGKVRGEVLDAGCGEAATSLYLAEVGHTTVGLDSAPKAIELAKGYAAERGLTNASFA 103

Query: 263 RMSSKEFT 270
                 FT
Sbjct: 104 VADISSFT 111


>gi|161528118|ref|YP_001581944.1| restriction modification system DNA specificity subunit
           [Nitrosopumilus maritimus SCM1]
 gi|160339419|gb|ABX12506.1| restriction modification system DNA specificity domain
           [Nitrosopumilus maritimus SCM1]
          Length = 730

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             +  +L+L CG+G F +   +    V+ V+  +     A+ N   N + N  ++   S 
Sbjct: 281 NSKMKVLDLACGSGAFLVNAGKFGASVVGVDANRQIANIAKINCYLNGIKNASVICADS- 339

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                +       ++   +I +  F  +   PP
Sbjct: 340 -----LGPLENLAKMSSGNIQTNSFDLVLTHPP 367


>gi|37523875|ref|NP_927252.1| hypothetical protein glr4306 [Gloeobacter violaceus PCC 7421]
 gi|35214881|dbj|BAC92247.1| glr4306 [Gloeobacter violaceus PCC 7421]
          Length = 400

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNI 251
           G   HM+ +   A   +   +L++  G+G  S  LA +    V+AVEI   +++ A+   
Sbjct: 47  GQIEHMVRYAFVAPFALGKKVLDIASGSGYGSQYLALQGATEVVAVEIDSEAIKYAQ--- 103

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             +    V+ V+  +    Q      +     +   H  R +   ++  R
Sbjct: 104 KHHSHPAVRFVQSDAHAVPQLENAAFDVIVSFETIEHLLRPRDFLLELRR 153


>gi|311063757|ref|YP_003970482.1| methyltransferase [Bifidobacterium bifidum PRL2010]
 gi|310866076|gb|ADP35445.1| Methyltransferase [Bifidobacterium bifidum PRL2010]
          Length = 234

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVE-------AARYNIAA 253
           + +        +L+L+ G G   +  L+R    ++AVE + P+         A + N + 
Sbjct: 49  LDSWQVLDDARVLDLFAGTGALGIEALSRGARELVAVESSAPAAALIAKTLTALQRNRSW 108

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFN-RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 +++R  ++++  +       N         S  F  IF+DPP +   +    ++
Sbjct: 109 ERGMTARVIRARAEKYVASGAARSASNADAAGGSSKSAAFDVIFIDPPYAFATEDCNQLL 168

Query: 313 QAY 315
              
Sbjct: 169 SDM 171


>gi|268326450|emb|CBH40038.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 11 family [uncultured archaeon]
          Length = 281

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 30/71 (42%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +  VL      + ++LE+  G G F +  AR    V AVE +   +E    N     V N
Sbjct: 55  VADVLYEVITPESEVLEIGAGPGTFVIPFARTVKNVTAVEPSNGMLEYLIRNAEEAGVEN 114

Query: 259 VKIVRMSSKEF 269
            +++    ++ 
Sbjct: 115 FELITKKWEDI 125


>gi|238921947|ref|YP_002935461.1| precorrin-6Y C5,15-methyltransferase / precorrin-8W decarboxylase
           [Eubacterium eligens ATCC 27750]
 gi|238873619|gb|ACR73327.1| precorrin-6Y C5,15-methyltransferase / precorrin-8W decarboxylase
           [Eubacterium eligens ATCC 27750]
          Length = 396

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 2/108 (1%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           + ++  G G+ S+ LA H     V AVE  +        N     +NN++I+  ++ +  
Sbjct: 244 VYDIGAGTGSVSVELALHAPYGTVYAVERTEEGCSLIARNAEKFGLNNIEIIHGNAADVI 303

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
             +    E           Y F +I    P   +    V +      I
Sbjct: 304 DNLPVPDEVFIGGSGGESEYIFDSILRKNPNVHVVATAVTLETLQDMI 351


>gi|297564793|ref|YP_003683765.1| type 11 methyltransferase [Meiothermus silvanus DSM 9946]
 gi|296849242|gb|ADH62257.1| Methyltransferase type 11 [Meiothermus silvanus DSM 9946]
          Length = 96

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L   +     +   +L+L CG G  +L LAR    V+ ++++  ++  A        ++ 
Sbjct: 23  LTAAVMPYLALAKTVLDLGCGGGKDALRLAREGFHVVGLDLSSAAIGQAEARAKEEGLS- 81

Query: 259 VKIVRMSSKE 268
            + +     E
Sbjct: 82  AEFLAADMSE 91


>gi|227874251|ref|ZP_03992450.1| O-methyltransferase [Oribacterium sinus F0268]
 gi|227839920|gb|EEJ50351.1| O-methyltransferase [Oribacterium sinus F0268]
          Length = 245

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +G + +L  GNG   L+LA     + +  +EI + +VE AR ++A N    + I+     
Sbjct: 40  RGRVFDLCTGNGIVPLLLAAKTEAESIYGIEIQREAVELARRSVALNEEARIHILEGDLC 99

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +  +         R  +    +  F  +  +PP
Sbjct: 100 KIQEQ--------RTAEGKSLASSFTVVTANPP 124


>gi|205352198|ref|YP_002225999.1| metallothionein SmtA [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205271979|emb|CAR36823.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 267

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VL    G +  +L+  CG G  ++ +A    +V   +++   +  AR    A  V  
Sbjct: 34  LDRVLEEIGGRKLRVLDAGCGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSK 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++  +++    +    + 
Sbjct: 94  DMHFIQCPAQDVASHLESPVDL 115


>gi|154334668|ref|XP_001563581.1| arginine N-methyltransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
 gi|134060602|emb|CAM42151.1| arginine N-methyltransferase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 405

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 9/130 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
            E +    +G    LL L CG G +S++ AR     V+ ++ +   V+AAR     N + 
Sbjct: 70  YEVIFRNVRGKT--LLHLGCGMGLYSMLAARGMAKMVIGIDSSAI-VDAARVVAEQNGLK 126

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP- 316
           N++ +R    E    +  + +F+ +    +         +       D          P 
Sbjct: 127 NIQFIRGRLCEALHQLPSDMKFDYVLCEWMGPLLLNERVLTDALYARDHLLTESGALCPN 186

Query: 317 ----HILYIS 322
               H++ +S
Sbjct: 187 RASLHVVAVS 196


>gi|121700134|ref|XP_001268332.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
 gi|119396474|gb|EAW06906.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
          Length = 241

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
            +LE  CG G  S  LA   D+V+ +++++  ++    N         +         F 
Sbjct: 57  KVLEYACGTGAVSSALAPFVDKVVGIDVSEEMIKQYNSNAKETGFAGKMAGYVGDL--FA 114

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           +++  E      +D D+ +        D P   L  
Sbjct: 115 ESVPAEISGPEFQDFDLVAVSMALHHFDKPEFALKR 150


>gi|321259083|ref|XP_003194262.1| arginine N-methyltransferase 3 [Cryptococcus gattii WM276]
 gi|317460733|gb|ADV22475.1| Arginine N-methyltransferase 3, putative [Cryptococcus gattii
           WM276]
          Length = 593

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEF 269
           ++++ CG G  S++ A+     V A+E +  +V+ AR NI  N   NV  +++   ++ 
Sbjct: 259 VMDVGCGTGILSMLAAKAGAKHVYAIEASGLAVK-ARENIQKNGFANVITVIQGKVEDI 316


>gi|309777072|ref|ZP_07672038.1| putative SAM-dependent methyltransferase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915142|gb|EFP60916.1| putative SAM-dependent methyltransferase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 293

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 17/144 (11%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYCGNGNF 223
           E  T++   L ++     F           +   M++ +  + +     +L L+   G  
Sbjct: 72  ESWTISYGELRFKVSPTGFKHTGLFPEQAANWDWMMDTIRESGR-SDLRVLNLFAYTGGA 130

Query: 224 SLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           ++  A      V+ V+ +K  V  A+ N+  +H+   K +R    +  + + RE+   R 
Sbjct: 131 TMACASAGAAEVVHVDASKGMVNWAKENMVLSHLEQHK-IRFIVDDVLKFVAREKRRGR- 188

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDD 306
                    +  I +DPP  G   
Sbjct: 189 --------TYHAIIMDPPSYGRGP 204


>gi|227833117|ref|YP_002834824.1| menaquinone biosynthesis methyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182391|ref|ZP_06041812.1| menaquinone biosynthesis methyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227454133|gb|ACP32886.1| menaquinone biosynthesis methyltransferase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 200

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             ++ A       +L+  CG+G     LA+    VL V++    +E A        VN+ 
Sbjct: 36  ARLIDAMSERHSRVLDAGCGSGRLGGELAKRGHTVLGVDVDPILIEHA--------VNDY 87

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
              R    + ++    E  F    DI + +    T      R          ++     +
Sbjct: 88  PEARWEVGDLSEEEIPEDNF----DIAVAAGNVMTFIATEGREAALRNVFNALRPGGRFV 143


>gi|218133796|ref|ZP_03462600.1| hypothetical protein BACPEC_01685 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991171|gb|EEC57177.1| hypothetical protein BACPEC_01685 [Bacteroides pectinophilus ATCC
           43243]
          Length = 297

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 22/144 (15%)

Query: 174 AGRTLIYRQIENSFT-------Q-PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
             + L +     SF        Q  N       +    AA    +  +L L+   G  +L
Sbjct: 82  FKKPLRFNLKPFSFKHTGLFPEQAVNWDWCGSKIAQRKAAEPDREIKILNLFAYTGGATL 141

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLK 283
             A     V  V+ +K  V  A+ N A+  +++  V+ +     +F      ERE  R  
Sbjct: 142 ACAASGAFVTHVDASKGMVGWAKENAASTGLSDRSVRWIVDDCIKFV-----EREIRR-- 194

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDA 307
                   +  I +DPP  G    
Sbjct: 195 -----GNHYDGIIMDPPSYGRGPK 213


>gi|91787679|ref|YP_548631.1| 3-demethylubiquinone-9 3-methyltransferase [Polaromonas sp. JS666]
 gi|91696904|gb|ABE43733.1| 3-demethylubiquinone-9 3-methyltransferase [Polaromonas sp. JS666]
          Length = 235

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 41/105 (39%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L+W+          +L++ CG G  +  +AR    VL +++A  +++ A+ + 
Sbjct: 33  HQINPLRLDWIEGQAPLKGQRVLDVGCGGGILADAMARKGADVLGIDLATKALKVAQLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
                  V+   +S++          +     ++  H     ++ 
Sbjct: 93  LEAQTEGVEYREISAEALAAEQPASFDVVTCMEMLEHVPNPASVV 137


>gi|85858916|ref|YP_461118.1| SAM-dependent methyltransferase [Syntrophus aciditrophicus SB]
 gi|85722007|gb|ABC76950.1| SAM-dependent methyltransferase [Syntrophus aciditrophicus SB]
          Length = 267

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +LE VL     +   ++E+  G G +++ +A+    V A+E +   V+  R N+     +
Sbjct: 44  LLEVVLKEMDELDA-VIEIGPGTGRWTIPVAKRVRSVTAIEPSAGMVDILRENLNHAGFH 102

Query: 258 NVKIVRMSSKEFTQAM 273
           NV+I+  + ++ + ++
Sbjct: 103 NVEILSQTWEDASPSI 118


>gi|57505630|ref|ZP_00371557.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57016177|gb|EAL52964.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 36/68 (52%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              ++++ CG G ++L LA     +LA++ +K  +   + + +   ++N+K V +S ++F
Sbjct: 38  DKSVIDIGCGTGVWTLHLAFLAKEILALDNSKAMLAILQEDASKLGLSNIKSVNLSFEDF 97

Query: 270 TQAMRRER 277
            +     R
Sbjct: 98  MKENANLR 105


>gi|313836078|gb|EFS73792.1| methyltransferase small domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314929614|gb|EFS93445.1| methyltransferase small domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970610|gb|EFT14708.1| methyltransferase small domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906180|gb|EGG25955.1| methyltransferase small domain protein [Propionibacterium sp. P08]
          Length = 206

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 23/126 (18%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
            G  V M E          G  L+L CG G  +  L R     RV++V++   +++    
Sbjct: 52  PGTAVLMRE---VTPPPSDGTFLDLGCGYGPIACALGRACPGSRVVSVDVNDLAIDLTTR 108

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N  A  V +                  R      D      RF  I+ +PP         
Sbjct: 109 NAKALGVGD------------------RVHACRPDEVDPDLRFDEIWSNPPIRVGKAVLH 150

Query: 310 GMVQAY 315
            M+  +
Sbjct: 151 EMLTMW 156


>gi|307324030|ref|ZP_07603239.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
 gi|306890479|gb|EFN21456.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
          Length = 249

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            H++ + L       G  L+L CG G   L LA     V AV+++  ++  A        
Sbjct: 54  EHLVSY-LDRGLVTPGRALDLGCGPGRNGLHLASRGFTVDAVDLSPTAISWATERAREAG 112

Query: 256 VNNVKIVRMSSKEFTQA 272
              ++     +   T  
Sbjct: 113 AE-IRFHCGDAFALTAG 128


>gi|257416747|ref|ZP_05593741.1| modification methylase HemK [Enterococcus faecalis AR01/DG]
 gi|257158575|gb|EEU88535.1| modification methylase HemK [Enterococcus faecalis ARO1/DG]
          Length = 277

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|257087540|ref|ZP_05581901.1| modification methylase HemK [Enterococcus faecalis D6]
 gi|256995570|gb|EEU82872.1| modification methylase HemK [Enterococcus faecalis D6]
 gi|315025303|gb|EFT37235.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2137]
          Length = 277

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|239993486|ref|ZP_04714010.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
           methyltransferase activity and a PUA domain [Alteromonas
           macleodii ATCC 27126]
          Length = 397

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D+L  +   G FS   LA     V  V++++P+++ A++++A N ++          E  
Sbjct: 222 DVLNCFSYTGTFSCYALAGGAKSVTNVDVSQPALDLAKHHVAINGLD----------ENK 271

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
                +  F  L++      +F  + +DPP+     AT+
Sbjct: 272 ANYVNQDVFKALREYHEQGKQFDMVILDPPKFVDSKATL 310


>gi|219557280|ref|ZP_03536356.1| hypothetical protein MtubT1_08217 [Mycobacterium tuberculosis T17]
 gi|289569392|ref|ZP_06449619.1| transferase [Mycobacterium tuberculosis T17]
 gi|289543146|gb|EFD46794.1| transferase [Mycobacterium tuberculosis T17]
          Length = 114

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + GD+L++ CG G+ ++ LAR+  +V  ++I+  ++  A+   +   V+ VK     + +
Sbjct: 45  VHGDVLDIGCGLGDNAIYLARNGYQVTGLDISPTALTTAKRRASDAGVD-VKFAVGDATQ 103


>gi|153830004|ref|ZP_01982671.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148874489|gb|EDL72624.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 199

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 54/137 (39%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+           L+L+ G+G      A R  ++V  +E+   + +  + N+ 
Sbjct: 46  VKETLFNWLAQEVPN--ARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQ 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +   +                +  +F+DPP R GL   T  +
Sbjct: 104 SLKAENIELIHTDALAFLRQSSKP---------------YDVVFIDPPFRQGLLQETTQL 148

Query: 312 VQ-----AYPHILYISC 323
           ++     A   ++YI C
Sbjct: 149 LEQNGWLAPQAMIYIEC 165


>gi|148926404|ref|ZP_01810088.1| hypothetical protein Cj8486_0246c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145844796|gb|EDK21901.1| hypothetical protein Cj8486_0246c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 37  QNKSIIDIGCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|73670681|ref|YP_306696.1| dimethyladenosine transferase [Methanosarcina barkeri str. Fusaro]
 gi|118600876|sp|Q466S6|RSMA_METBF RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|72397843|gb|AAZ72116.1| dimethyladenosine transferase [Methanosarcina barkeri str. Fusaro]
          Length = 287

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 179 IYRQIENSFTQPNAGINVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
            Y     +F Q +  ++   L+  V AA  G +  +LE+  G GN +  LA+   +V+A+
Sbjct: 18  KYNIKGGTFDQ-HFLVDAGYLDRIVAAAELGPKDVVLEIGAGVGNLTERLAKKVKKVIAI 76

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           E+    V         + V N++I+   + + 
Sbjct: 77  ELDPVLVRVLHD--RFDKVGNIEIIAGDALKV 106


>gi|57237318|ref|YP_178331.1| hypothetical protein CJE0311 [Campylobacter jejuni RM1221]
 gi|57166122|gb|AAW34901.1| conserved domain protein [Campylobacter jejuni RM1221]
          Length = 237

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 37  QNKSIIDIGCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|54027294|ref|YP_121536.1| hypothetical protein nfa53200 [Nocardia farcinica IFM 10152]
 gi|54018802|dbj|BAD60172.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 208

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VK 260
                    G  L+L CG G  ++ LA    +V AV+I+  ++E A  +     V++ + 
Sbjct: 30  AREVEHQTPGTALDLGCGEGADAIWLAERGWQVTAVDISTVALERAAAHAVEAGVDHRIT 89

Query: 261 IVRMSSKEFTQA 272
             R +  E   A
Sbjct: 90  FARHNLLESFPA 101


>gi|226361768|ref|YP_002779546.1| hypothetical protein ROP_23540 [Rhodococcus opacus B4]
 gi|226240253|dbj|BAH50601.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 76

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 18/88 (20%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+L  G+G  S+  A    RV AV++++ +V  A  N    H  + ++VR    E    
Sbjct: 1   MLDLCAGSGILSVCAAEQGARVTAVDVSRRAVATAWMNTRP-HRRSARVVRGDLTE---- 55

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP 300
                         +   RF  +  +PP
Sbjct: 56  -------------PVRGERFDLVVSNPP 70


>gi|201067915|ref|ZP_03217797.1| hypothetical protein CJBH_0044 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004505|gb|EDZ04987.1| hypothetical protein CJBH_0044 [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 229

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 29  QNKSIIDIGCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFET 88

Query: 269 FTQ 271
           + Q
Sbjct: 89  WMQ 91


>gi|163840525|ref|YP_001624930.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162954001|gb|ABY23516.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 194

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 14/123 (11%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +   + A     +  +L+LY G+G   L   +R   +V  VE+   +    + N  
Sbjct: 29  VKEALFSRLEAMGVLKESKVLDLYAGSGALGLESASRGAAKVDLVELDARAAAVCQRNAD 88

Query: 253 A-NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             N V     VR++  +  Q ++R +              +  +F+DPP    +D    +
Sbjct: 89  LVNSVTAAGTVRVNRAKVEQFLQRAK------------GPWDLVFLDPPYPLTEDELAEV 136

Query: 312 VQA 314
           + A
Sbjct: 137 LLA 139


>gi|150403494|ref|YP_001330788.1| hypothetical protein MmarC7_1579 [Methanococcus maripaludis C7]
 gi|150034524|gb|ABR66637.1| protein of unknown function Met10 [Methanococcus maripaludis C7]
          Length = 253

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                +++++ G G F++ +A++     + A+E+   S      NI  N + NV  +   
Sbjct: 98  NSNETVVDMFAGIGYFTIPIAKYSNPKMIYALELNPDSYYYLSENIKLNKLENVTPIWGD 157

Query: 266 SKEF 269
           +++F
Sbjct: 158 NRDF 161


>gi|85703506|ref|ZP_01034610.1| Mg protoporphyrin methyltransferase [Roseovarius sp. 217]
 gi|85672434|gb|EAQ27291.1| Mg protoporphyrin methyltransferase [Roseovarius sp. 217]
          Length = 240

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML  +    +G+   +L+  CG G  +  LA     V+AV+I+   ++ AR  +  + 
Sbjct: 61  AQMLARLPQDMRGL--RVLDAGCGAGQMTAELAARGAEVMAVDISPAIIDLARRRLPESL 118

Query: 256 VNNVKIVRMSSKE-----FTQAMR-------REREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V +V        +     F   M         E +  R  D          IF   PR+ 
Sbjct: 119 VPHVSFHAGDMLDPALGMFDHVMAMDSLIYYTEADLARALDALAARTESTVIFTVAPRTP 178

Query: 304 LDDATVGMVQAYPH 317
           L      M + +P 
Sbjct: 179 LLMTMWRMGKLFPR 192


>gi|225858812|ref|YP_002740322.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus pneumoniae 70585]
 gi|225720454|gb|ACO16308.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus pneumoniae 70585]
          Length = 279

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 39/205 (19%)

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI-------QLIGRANK 157
           F+ + +    +  I++ +Y  L + ++ +    L+  +   + +        QL      
Sbjct: 10  FEEELIRQGEEAEILSFVYRSLKNLSFTDFIFALQQEVTTEEEKQFVEDIYQQLAAHKPA 69

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             I    D+    L V  R LI R                ++E +L         +L++ 
Sbjct: 70  QYIIGQADFYGMHLKVDERVLIPRPE-----------TEELVELILTENLETNLSVLDIG 118

Query: 218 CGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G+G  +L LA++     V A +I++ +++ AR N       N++I    S  FT+    
Sbjct: 119 TGSGAIALALAKNRPDWSVTAADISQEALDLARENAKN---QNLQIFLKKSDCFTE---- 171

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPP 300
                        S ++  I  +PP
Sbjct: 172 ------------ISEKYDIIVSNPP 184


>gi|255933734|ref|XP_002558246.1| Pc12g14410 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582865|emb|CAP81068.1| Pc12g14410 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 266

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 15/106 (14%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y  +  T   RT  +R + NS          ++L  +          +L++ CG G+ ++
Sbjct: 5   YTTDHSTSVLRTHSWRTVSNS--------TPYLLPHLKPDM-----RILDVGCGPGSITI 51

Query: 226 VLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            LA+H     V  VE     ++ AR    A  V+N+     +  + 
Sbjct: 52  SLAKHVLSGHVTGVEYVPDPLDGARALAQAEGVSNITFREGNIHDL 97


>gi|217420963|ref|ZP_03452468.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           576]
 gi|254199088|ref|ZP_04905503.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           S13]
 gi|169656918|gb|EDS88315.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           S13]
 gi|217396375|gb|EEC36392.1| ribosomal protein L11 methyltransferase [Burkholderia pseudomallei
           576]
          Length = 300

 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+      V  ++I   +VEAAR+N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGHVTGIDIDPQAVEAARHNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|322834711|ref|YP_004214738.1| ribosomal protein L11 methyltransferase [Rahnella sp. Y9602]
 gi|321169912|gb|ADW75611.1| ribosomal protein L11 methyltransferase [Rahnella sp. Y9602]
          Length = 294

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAA 253
              M    L +       +++  CG+G  ++  L      V+ ++I   +++A+R N   
Sbjct: 144 TTAMCLQWLDSLDLTDKTVIDFGCGSGILAIAALKLGAKHVVGIDIDPQAIQASRDNAER 203

Query: 254 NHV 256
           N V
Sbjct: 204 NGV 206


>gi|315057687|gb|ADT72016.1| Hypothetical protein CJS3_0252 [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 237

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 37  QNKSIIDIGCGTGVWTLHLAKEAKEILALDSANAMLEILQEDAKKLNLNNIKCENLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|313202221|ref|YP_004040879.1| methyltransferase small [Methylovorus sp. MP688]
 gi|312441537|gb|ADQ85643.1| methyltransferase small [Methylovorus sp. MP688]
          Length = 331

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 20/116 (17%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSV 244
           F  P+    +  ++      +      +++  G+G  ++ LA  F    V  V+I   ++
Sbjct: 128 FFGPDTYRFIRAVQQYAQTRQPTVRRAVDIGTGSGVGAIALAGLFPDAEVFGVDINPHAL 187

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             AR N AAN    V++V                   L+D+   +  F  I  +PP
Sbjct: 188 ALARVNAAANGCERVQMVHSDL---------------LQDV---AGEFDLIIANPP 225


>gi|291244186|ref|XP_002741974.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 262

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARY 249
             + + + E + A        LL++ CG+G  +  LA      RV A++I    VE A  
Sbjct: 15  RYVALSIKEVLAALPMQSSDRLLDVCCGSGELTKALADQLQTGRVTAIDINPQMVEIAE- 73

Query: 250 NIAANHVNNVKIVRMSSK 267
             +AN   N+      + 
Sbjct: 74  --SANTSPNITFAVADAG 89


>gi|256763196|ref|ZP_05503776.1| modification methylase HemK [Enterococcus faecalis T3]
 gi|256853869|ref|ZP_05559234.1| hemK protein [Enterococcus faecalis T8]
 gi|307290430|ref|ZP_07570345.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0411]
 gi|256684447|gb|EEU24142.1| modification methylase HemK [Enterococcus faecalis T3]
 gi|256710812|gb|EEU25855.1| hemK protein [Enterococcus faecalis T8]
 gi|306498623|gb|EFM68125.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0411]
 gi|315030388|gb|EFT42320.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX4000]
 gi|315150060|gb|EFT94076.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0012]
          Length = 277

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|229156472|ref|ZP_04284563.1| Methyltransferase type 11 [Bacillus cereus ATCC 4342]
 gi|228626975|gb|EEK83711.1| Methyltransferase type 11 [Bacillus cereus ATCC 4342]
          Length = 261

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFQEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  ++++ 
Sbjct: 88  HENVTFVAGNAEDL 101


>gi|261339255|ref|ZP_05967113.1| hypothetical protein ENTCAN_05491 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319112|gb|EFC58050.1| SmtA protein [Enterobacter cancerogenus ATCC 35316]
          Length = 259

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ +LA   G +  +L+   G G  ++++A+    V   +++   V  AR       V +
Sbjct: 34  LDKLLADYPGQRLRVLDAGGGEGQTAILMAQRGHHVTLCDLSAEMVARARQAADEKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           N+  +  ++++  Q +  + +      +       + +   
Sbjct: 94  NMHFIHCAAQDIAQHLETQVDLILFHAVLEWVADPQAVLKT 134


>gi|118089469|ref|XP_420244.2| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 552

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 17/238 (7%)

Query: 77  MPGSLLINALMIEMMA-----TIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            P   L   L   ++      +  LE  +     +   L   S+ +    ++ +L    W
Sbjct: 210 PPAQKLRCELRRLLVERGESWSEELERDVPRTWQRHGDLVLLSEDSFSAALWAKLGPVLW 269

Query: 132 RECAIRL-RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
              A  L    L  R   +     +    + L  +   E +    R   +   +  F+  
Sbjct: 270 ETVAAALGAQRLAKRGRVLPDKMCSPTVTLLLGHNSWVEHVDNGIR-YTFDVTKCMFSPG 328

Query: 191 NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAA 247
           N      + E +  A+    G++L +LY G G F+L   +        A E    ++EA 
Sbjct: 329 N------ITEKLRVASMQCSGEVLVDLYAGIGYFTLPYLVHAAAAFAHACEWNPHALEAL 382

Query: 248 RYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           R N+A N V +  +I    S++       +R    L       +      +     G+
Sbjct: 383 RRNLALNGVQDRCQIHAGDSRQLQLRDVADRVNLGLIPSSEEGWPVACRVLKKSTGGV 440


>gi|186476932|ref|YP_001858402.1| type 11 methyltransferase [Burkholderia phymatum STM815]
 gi|184193391|gb|ACC71356.1| Methyltransferase type 11 [Burkholderia phymatum STM815]
          Length = 250

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q +A      L+ + A+     G  +L+L CG G+ S  +A H   V+A +IA   +   
Sbjct: 22  QVHATGAD--LQTLAASVAATPGAAVLDLGCGAGHASFAVAPHAASVVAYDIAPQMLATV 79

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQA 272
                   ++N++    ++++   A
Sbjct: 80  AGAAVERGLSNIRTQHGAAEKLPFA 104


>gi|304437471|ref|ZP_07397429.1| SAM-dependent methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304369521|gb|EFM23188.1| SAM-dependent methyltransferase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 245

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 15/112 (13%)

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +LA    + G   +L+L  G G   L++A H   V A EI     E A  N A N +   
Sbjct: 36  LLAHFPTLTGRERVLDLGTGMGIIPLLIADHAAIVTAAEIDPVQAELAARNAALNGL--- 92

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                     T+ +       R          +  +F +PP   +    + M
Sbjct: 93  ----------TEKITVREGDYRDPAALFSYEAYDIVFANPPYRPVGRGALSM 134


>gi|296535666|ref|ZP_06897842.1| N-6 adenine-specific DNA methylase [Roseomonas cervicalis ATCC
           49957]
 gi|296264017|gb|EFH10466.1| N-6 adenine-specific DNA methylase [Roseomonas cervicalis ATCC
           49957]
          Length = 250

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 17/111 (15%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGN-FSLVLAR-HFDRVLAVEIAKPSVEAARY 249
           AG++  ML   + A  G    +LE  CG+G  F  +LAR    RV+A+E        AR 
Sbjct: 30  AGLDAVMLAAAIPARPGET--VLEGGCGSGAVFLCLLARVPGLRVVAIERDPELAALARE 87

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N A N           + E  +    +    R         R    F +PP
Sbjct: 88  NAARNG-------HAGAVEVLEGDIADPALRR------AWPRCDHAFANPP 125


>gi|295113545|emb|CBL32182.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus sp. 7L76]
 gi|315161811|gb|EFU05828.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0645]
          Length = 277

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|239928893|ref|ZP_04685846.1| methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291437220|ref|ZP_06576610.1| methylase [Streptomyces ghanaensis ATCC 14672]
 gi|291340115|gb|EFE67071.1| methylase [Streptomyces ghanaensis ATCC 14672]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 36/173 (20%)

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI---- 194
           R  LH  K               + R    E L        +R +E    Q   G+    
Sbjct: 39  RGELHTVKDSDFDARYWE----VIARREAREPLQHITGRAYFRYLE---LQVGPGVFVPR 91

Query: 195 --NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
                ++EW + A +    ++  +++L  G+G  +L LA+     RV AVE+++ ++   
Sbjct: 92  PETESVVEWAIDAVRAMDVVEPRIVDLCTGSGAIALALAQEVPRSRVHAVELSEDALVWT 151

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           R N+             S  E  Q        N L        +   +  +PP
Sbjct: 152 RRNM-----------DGSRVELRQG-------NALTAFPDLDGQVDLVISNPP 186


>gi|225386764|ref|ZP_03756528.1| hypothetical protein CLOSTASPAR_00512 [Clostridium asparagiforme
           DSM 15981]
 gi|225047126|gb|EEG57372.1| hypothetical protein CLOSTASPAR_00512 [Clostridium asparagiforme
           DSM 15981]
          Length = 342

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGN 222
           ER+ +     +   +   F   N  +         ++E VL   K    D+L++  G+G 
Sbjct: 71  ERIPLQQLLGVQEFMGLEFF-VNEHVLIPRQDTETLVELVLEEQKRRDLDVLDVCTGSGC 129

Query: 223 FSLVLAR--HFDRVLAVEIAKPSVEAARYNIAA 253
            ++ LAR   +  V A++++  +++ A  N AA
Sbjct: 130 IAVSLARLGRYASVTALDVSAEALKVAEKNAAA 162


>gi|289207359|ref|YP_003459425.1| methyltransferase [Thioalkalivibrio sp. K90mix]
 gi|288942990|gb|ADC70689.1| methyltransferase [Thioalkalivibrio sp. K90mix]
          Length = 203

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 33/109 (30%), Gaps = 16/109 (14%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI 251
                +  W+     G    +L+LY G G       +R    V  VE    +      N 
Sbjct: 42  AQRETLFNWLQPQLPG--ARVLDLYAGTGALGFEAASRGAREVWLVERDARAAAQLEANR 99

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                  V I R             R   +L + D     F  +F+DPP
Sbjct: 100 ERLGATQVHIRRDDVA---------RLLGQLPEGD----PFDVVFLDPP 135


>gi|224371610|ref|YP_002605774.1| putative SAM-dependent methyltransferase family protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223694327|gb|ACN17610.1| putative SAM-dependent methyltransferase family protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 321

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 24/140 (17%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           R+ +  R L +    + +   + G+         M+  + A       D L LYC  G+F
Sbjct: 118 RIVMNERDLKFFINPSDY--VDTGLFSDHRNTRQMVRQMAA-----GKDFLNLYCYTGSF 170

Query: 224 SLVLARHFDRV-LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           S   A+   R  L+V+ +  ++  A  N+A N + +           T  + +   F+ L
Sbjct: 171 SCYAAKGGARSTLSVDRSDTAISWAGENMALNGLGSE----------TNVLVQAPTFDFL 220

Query: 283 KDIDIHSYRFKTIFVDPPRS 302
           K    ++  F    VDPP  
Sbjct: 221 KQAADNNQTFDLAVVDPPSF 240


>gi|125717978|ref|YP_001035111.1| HemK protein [Streptococcus sanguinis SK36]
 gi|125497895|gb|ABN44561.1| HemK protein, putative [Streptococcus sanguinis SK36]
 gi|324991175|gb|EGC23109.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           SK353]
          Length = 276

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 37/192 (19%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E + + RD L A   Q QL+       I    D+    L V  R LI R           
Sbjct: 46  EVSQKDRDQLKAI--QEQLLVHKPAQYIIGSSDFHGLTLKVDERVLIPRPE--------- 94

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYN 250
                ++E +L+        +L++  G+G  +L LA  R   ++ A +++  ++  A  N
Sbjct: 95  --TEELVELILSENPESSLSVLDIGTGSGAIALALANSRPNWQITASDLSDDALALAAEN 152

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDA 307
             +  + N+  V+                     +D    +F  I  +PP    +  D+ 
Sbjct: 153 AQSCEL-NLAFVQSDC------------------LDSIQGKFDIIVSNPPYISEADKDEV 193

Query: 308 TVGMVQAYPHIL 319
            + ++ + PH+ 
Sbjct: 194 GLNVLTSEPHMA 205


>gi|16081974|ref|NP_394384.1| hypothetical protein Ta0926 [Thermoplasma acidophilum DSM 1728]
 gi|10640203|emb|CAC12055.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 329

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           E         +G+ +L+++ G G F+L +A++ +  R+ A +I   ++   + N   N V
Sbjct: 169 ERTRMRYMTFEGETVLDMFSGIGYFALPVAKYGNPMRIFACDINPDAIHYLKENAVINGV 228

Query: 257 NNV 259
            N+
Sbjct: 229 ENI 231


>gi|127514252|ref|YP_001095449.1| hypothetical protein Shew_3324 [Shewanella loihica PV-4]
 gi|126639547|gb|ABO25190.1| conserved hypothetical protein [Shewanella loihica PV-4]
          Length = 353

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           E+V A ++G    +L L+          A    + V  V+ +  ++ A R N   N V +
Sbjct: 155 EYVKANSQGKS--VLNLFSYTCGIGTAAAVGGAESVTNVDFSSFALAAGRRNAELNGVSD 212

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKD-----IDIHSYRFKTIFVDPPRSGLDD 306
             + ++  +    + +   +   R          +   +F  +F+DPPR     
Sbjct: 213 RCEFIQSDAFPAMRQLAGMKVGGRRNQKLPSYPKLAPRQFDLVFLDPPRFAKSP 266


>gi|149372852|ref|ZP_01891873.1| hypothetical protein SCB49_12854 [unidentified eubacterium SCB49]
 gi|149354549|gb|EDM43114.1| hypothetical protein SCB49_12854 [unidentified eubacterium SCB49]
          Length = 416

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 14/98 (14%)

Query: 211 GDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKE 268
             +L+++   G FS+  LA+    V +++I+  ++E A+ N   N        +   +  
Sbjct: 246 KTMLDVFSYAGGFSVHALAKGATEVTSLDISAQALEVAKENGKLNKHKGKHFTIIGDA-- 303

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                     F  L+ + +   +F  + +DPP      
Sbjct: 304 ----------FLELERLVVEKKQFDVVVIDPPSFAKSK 331


>gi|110636627|ref|YP_676834.1| protoporphyrinogen oxidase [Cytophaga hutchinsonii ATCC 33406]
 gi|110279308|gb|ABG57494.1| possible protoporphyrinogen oxidase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 287

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 24/124 (19%)

Query: 185 NSFTQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLA 236
           +S+                ++  ++         ++++  G G  ++ LA+     RV A
Sbjct: 87  DSYFNVTPATLIPRPETEELVALIITENNSAAPQIIDIGTGTGCIAISLAKKIKGARVTA 146

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           V+I+  ++  A  N   N V+ V                  E N L         F  I 
Sbjct: 147 VDISTEALAVAEENALKNEVS-VSF---------------LEMNFLTQHSSIQSSFDIIV 190

Query: 297 VDPP 300
            +PP
Sbjct: 191 SNPP 194


>gi|108799868|ref|YP_640065.1| methyltransferase type 12 [Mycobacterium sp. MCS]
 gi|119868978|ref|YP_938930.1| methyltransferase type 12 [Mycobacterium sp. KMS]
 gi|108770287|gb|ABG09009.1| Methyltransferase type 12 [Mycobacterium sp. MCS]
 gi|119695067|gb|ABL92140.1| Methyltransferase type 12 [Mycobacterium sp. KMS]
          Length = 183

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               G  L++ CG G  S+ LA     V  ++I+  +VE A        V      R   
Sbjct: 35  FPTAGSALDVACGQGRVSIWLAERGLDVRGLDISSVAVEQAAATARERGV--ADRCRFDV 92

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            +    +      + +        R     V   R G   A   +
Sbjct: 93  VDLDCGLPPGPPVDVVVCHLFRDERLDRAMVARLRPGGLLAVAAL 137


>gi|148656313|ref|YP_001276518.1| type 11 methyltransferase [Roseiflexus sp. RS-1]
 gi|148568423|gb|ABQ90568.1| Methyltransferase type 11 [Roseiflexus sp. RS-1]
          Length = 294

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           ++L  +L         +L+L CG G  +LVLA    +V+ ++ +      A   IA N  
Sbjct: 55  YLLGDILPRHPVAGRRVLDLACGTGTLALVLADAGWQVIGIDRSP-----AMLAIARNRA 109

Query: 257 NNVK------IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
             V+       +    + F Q   R  +      +   S+   T   D
Sbjct: 110 QTVEPAFRPCFIEADMRRFWQTADRGIDCEWFNQVQPDSFHLVTCTYD 157


>gi|90020897|ref|YP_526724.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Saccharophagus degradans 2-40]
 gi|123277410|sp|Q21LB7|PIMT_SACD2 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|89950497|gb|ABD80512.1| protein-L-isoaspartate O-methyltransferase [Saccharophagus
           degradans 2-40]
          Length = 223

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 72/201 (35%), Gaps = 21/201 (10%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           RL  +     + R RD L  R     L+ +   ++  L+      R       L +R  E
Sbjct: 3   RLKLEGVGMTSKRTRDRLVER-----LLEQGVTSQFVLELIANTPRHLFLDEALSHRAYE 57

Query: 185 NS-----FTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
           ++     F Q      I   M E +L A  G    +LE+  G+G  + +LA+  + V +V
Sbjct: 58  DASLPIGFGQTLSQPYIVARMTEILLGA-AGDPKRVLEIGTGSGYQTCILAQAVEHVWSV 116

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEF------TQAMRREREFNRLKDIDIHSYR 291
           E  KP  + A+  +    +NNV                  A+        +    +    
Sbjct: 117 ERIKPLQDKAKQRLRHLGLNNVTYKHADGGFGWPEQGPFDAILSAAAPRDIPKSLLQQLA 176

Query: 292 FKTIFVDPPRSGLDDATVGMV 312
              + V P   G D+  + +V
Sbjct: 177 HNGVLVIP--VGADEQVLTLV 195


>gi|304317930|ref|YP_003853075.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779432|gb|ADL69991.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 277

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 31/166 (18%)

Query: 169 ERLTVAGRTLIYR--QIENSF----TQPNAGI------NVHMLEWVLAATKGIQGDLLEL 216
           E L +    + Y+    E  F       +  +         ++E VL   K     +L++
Sbjct: 58  EVLDLRKSGMPYQYIVGEKHFMGLIFNVSPSVLIPRNDTEILVEEVLKRLKSGD-TVLDI 116

Query: 217 YCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
             G+G  ++ +A+    +V AV+I+  ++E A+ N   N V++  I             +
Sbjct: 117 GTGSGAIAVSIAKYKDVKVYAVDISDGALEVAKENADINGVSDKVI-----------FIK 165

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPP--RSGLDDATVGMVQAYPHIL 319
              F+ + D      RF  I  +PP  RS   +     V+  P I 
Sbjct: 166 SDLFSSIPD----GIRFDLIVSNPPYIRSNEINELQEEVKREPKIA 207


>gi|255534106|ref|YP_003094478.1| PUA domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255347090|gb|ACU06416.1| PUA domain containing protein [Pedobacter heparinus DSM 2366]
          Length = 394

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 39/174 (22%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NV 259
           + A       +L+ +C +G F+L  L      V +V+ +  ++E  ++N+  N     N 
Sbjct: 212 ILADYTRGKSVLDCFCYSGGFTLNSLKSGAASVTSVDSSALAIETLQHNLELNGFKGSNQ 271

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVG---- 310
             ++    +  +  + E               F  + +DPP     RS LD A       
Sbjct: 272 HSIQSDVNKQLRIFKDE------------GKTFDVLVLDPPKYAPSRSALDRAARAYKDL 319

Query: 311 ------MVQAYPHILYISC----NPDSLCR--DLSILSTTHTIERLALFDQFPY 352
                 +++    +   SC    + ++  +    + L        + +  QF  
Sbjct: 320 NRLGMLLLKKGGILATFSCSGAVDMETFKQIIAWAALDAG---REVQIIRQFCQ 370


>gi|332878223|ref|ZP_08445951.1| protein-(glutamine-N5) methyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332683835|gb|EGJ56704.1| protein-(glutamine-N5) methyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 195 NVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
              +++WVL           ++++  G+G  ++ LA+      V AV+++  +++ AR N
Sbjct: 98  TEELVDWVLTTVTPTSKPLKIIDIGTGSGCIAISLAKSLPNAEVTAVDVSAKALQVARRN 157

Query: 251 IAANHVN 257
              N V 
Sbjct: 158 AELNGVT 164


>gi|326802942|ref|YP_004320760.1| methyltransferase small domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650229|gb|AEA00412.1| methyltransferase small domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 200

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 20/122 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA--VEIAKPSVEAARYNIA 252
              MLE +L   K     +L+L CG G   +VL  H+  V    V++ + ++  A+ N+A
Sbjct: 46  TRVMLEALLKEGKTY-HKILDLGCGYGPVGVVLGDHYPEVHLDLVDVNERALALAKKNLA 104

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N V++      S+ E                  +  + +  I  +PP           +
Sbjct: 105 LNQVDSANFYLSSAYE-----------------GLSDHDYDLIITNPPIRAGKKVVHAFI 147

Query: 313 QA 314
           + 
Sbjct: 148 EG 149


>gi|319951337|ref|ZP_08025167.1| putative RNA methyltransferase [Dietzia cinnamea P4]
 gi|319435000|gb|EFV90290.1| putative RNA methyltransferase [Dietzia cinnamea P4]
          Length = 422

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 11/104 (10%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHV 256
           ++          Q  + ++  G G  + VLAR   R V+A +I   +V+ AR N+    +
Sbjct: 213 LVADAGWPPGVDQPVVWDIGTGTGVLAAVLARRGARAVVASDINPRAVQCARGNVRRLGL 272

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                     ++    +R +        +   S R   +  +PP
Sbjct: 273 ----------EDRVTVVRGDLWPGDDDGVVNRSGRADVVVCNPP 306


>gi|291566902|dbj|BAI89174.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 442

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 213 LLELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+  CG+G    +L LA    +++ ++I++ SVEA+R  +  + + N +   M  +E 
Sbjct: 62  ILDAGCGSGYKALALALANPGAKIVGIDISEKSVEASRNRLKYHGIENAEFHAMYIEEL 120


>gi|295675764|ref|YP_003604288.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1002]
 gi|295435607|gb|ADG14777.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1002]
          Length = 217

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 161 CLDRDYVDERLTVAGRTLI---YRQIENSFTQPNAGINVHMLE------WVLAATKGIQG 211
            LD+D ++    V     +   YR +  +  +       HML        +         
Sbjct: 20  VLDQDVLNLLSIVKRENFVPAAYRDLAFADFEVPLPAGQHMLAPRVEARVLQELAVKKHE 79

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            +LE+  G+G  + +LA     VL V+I     E A+ N+ AN V NV++    +
Sbjct: 80  SVLEIGAGSGYMAALLAHRAQHVLTVDIEPELAELAKSNLIANGVLNVEVATGDA 134


>gi|196248986|ref|ZP_03147686.1| Methyltransferase type 12 [Geobacillus sp. G11MC16]
 gi|196211862|gb|EDY06621.1| Methyltransferase type 12 [Geobacillus sp. G11MC16]
          Length = 247

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +E          G  ++++ CG G  ++ LA+   +V  V++++  +  A+    
Sbjct: 21  QWQSFVERAFDRYAQRPGRQVIDIGCGTGELAIRLAKAGWQVSGVDVSEHMLVIAQEKAE 80

Query: 253 ANHVNNVKIVRMSSK-----EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           A  ++     +  ++     +   A       N L D D     F  ++      GL
Sbjct: 81  AAGIHVPFFEQNMAELDGFSDLDGAFIFCDALNYLTDEDDVKRTFSAVYRALGADGL 137


>gi|94985074|ref|YP_604438.1| hypothetical protein Dgeo_0969 [Deinococcus geothermalis DSM 11300]
 gi|94555355|gb|ABF45269.1| SAM-dependent methyltransferase [Deinococcus geothermalis DSM
           11300]
          Length = 395

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 20/177 (11%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIE-----NSFT--QPNAGINVHMLEWVLAATKGI 209
           +T +      V ER+T     L             F   Q     N  ++  +L+  +G 
Sbjct: 172 RTGVLWGD--VPERVTFFEDDLTLHFSPMDAQKTGFFLDQ---RDNRRLMRALLSPGEGF 226

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
               L++Y   G FSL  AR   + +A++  + ++         N ++ V +    + E 
Sbjct: 227 ----LDVYSYTGGFSLHAARAGAKPVAIDKDQIALGVLEREARENALD-VGVRWGDALET 281

Query: 270 TQAMRREREFN---RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
             A+ RER       L    +   +          +      + M++   H+L  +C
Sbjct: 282 LAALERERRVFGAAVLDPPTLAKRKEDVPRAKRIFTEGAKRALRMLKPGGHLLISTC 338


>gi|327279228|ref|XP_003224359.1| PREDICTED: trimethylguanosine synthase-like [Anolis carolinensis]
          Length = 943

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            I  H+ + V  + K     +++ +CG G  S+  A    RV+A++I    +  A  N  
Sbjct: 768 KIAEHIADRVRQSFK--SDIIVDAFCGVGGNSIQFALAGKRVIAIDIDPVKIRLAHNNAE 825

Query: 253 ANH-VNNVKIVRMSSKEFTQAMRREREF 279
                + ++ +     +   +++ +  F
Sbjct: 826 VYGVADQIEFICGDFMKLASSLKGDIVF 853


>gi|331700129|ref|YP_004336368.1| type 12 methyltransferase [Pseudonocardia dioxanivorans CB1190]
 gi|326954818|gb|AEA28515.1| Methyltransferase type 12 [Pseudonocardia dioxanivorans CB1190]
          Length = 228

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L  V+A        +LEL CG    SL  A+   RVLA + A  ++  A +N   N + 
Sbjct: 75  LASVVARRDVGGARVLELGCGLALPSLAAAQGGARVLATDHAPGALAFAAHNAERNGIR 133


>gi|261381287|ref|ZP_05985860.1| protein-(glutamine-N5) methyltransferase [Neisseria subflava
           NJ9703]
 gi|284795767|gb|EFC51114.1| protein-(glutamine-N5) methyltransferase [Neisseria subflava
           NJ9703]
          Length = 270

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 37/175 (21%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D   E  +++ +AL  R+ + + +       +  +R++   R TV    LI R       
Sbjct: 38  DDLAESDLQILEALAQRRLKGEPMAY-----LLGEREFYGRRFTVNPHVLIPRHE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VL      QG + +L  G+G  ++ +A  R    V A +I+  +++ 
Sbjct: 88  ------TEHLVEAVLKR-LPSQGRVWDLGTGSGAIAVTIALERGDADVRASDISVGALDT 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS-YRFKTIFVDPP 300
           AR N A      V+  + S                  D D  S  R+  I  +PP
Sbjct: 141 ARQNAAELGAK-VEFAQGS----------------WFDTDKPSEGRYDVIVSNPP 178


>gi|138896092|ref|YP_001126545.1| hypothetical protein GTNG_2455 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267605|gb|ABO67800.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 247

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 6/117 (5%)

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                +E          G  ++++ CG G  ++ LA+   +V  V++++  +  A+    
Sbjct: 21  QWQSFVERAFDRYAQRPGRQVIDIGCGTGELAIRLAKAGWQVSGVDVSEHMLVIAQEKAE 80

Query: 253 ANHVNNVKIVRMSSK-----EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           A  ++     +  ++     +   A       N L D D     F  ++      GL
Sbjct: 81  AAGIHVPFFEQNMAELDGFSDLDGAFIFCDALNYLTDEDDVKRTFSAVYRALGADGL 137


>gi|118602413|ref|YP_903628.1| methyltransferase small [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567352|gb|ABL02157.1| 16S rRNA m(2)G 1207 methyltransferase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 199

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 11/117 (9%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
               L+L CG G   L +A+      V  V+    +VE +  N+  NH+NN +    ++ 
Sbjct: 59  DDKCLDLGCGYGPIGLAVAKSCPQGEVHMVDKDFVAVELSNINVKLNHINNAQAYLSNA- 117

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
            F    +       L ++     R +   +              ++    I+++S N
Sbjct: 118 -FLSVNKTNYFDKILSNVPAKVGREQLSIIL-------YDAYDALKPNGKIMFVSIN 166


>gi|111023691|ref|YP_706663.1| methyltransferase [Rhodococcus jostii RHA1]
 gi|110823221|gb|ABG98505.1| possible methyltransferase [Rhodococcus jostii RHA1]
          Length = 115

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + E + A   G    +L+L CG G  S+   A     V AV++++ +  +   N      
Sbjct: 18  LAEVLAARDLGPGTRVLDLCCGTGVLSVEACAAGAGWVTAVDVSRRAAISTWLNAKLRRR 77

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               +  + ++E  +  +R      L   D+ 
Sbjct: 78  TIRVVRGLEAREMIRPGQRTERIAVLAATDLR 109


>gi|18376358|emb|CAD21136.1| conserved hypothetical protein [Neurospora crassa]
          Length = 557

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LY G G F    A+   RVL  EI   SVE  R    AN  + VK+ +   ++ T+  
Sbjct: 353 LDLYAGIGYFVFSYAKLGMRVLCWEINPWSVEGLRRGAVANKWS-VKVFQGE-EDLTKKT 410

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
             E     L++ D    +          +G     +   +    ++++
Sbjct: 411 TAEL----LQEADAEGVQIVVFLEGNESAGRRVRELRERKRELDVVHV 454


>gi|57642176|ref|YP_184654.1| SAM-dependent methyltransferase [Thermococcus kodakarensis KOD1]
 gi|57160500|dbj|BAD86430.1| SAM-dependent methyltransferase, UbiE/COQ5 family [Thermococcus
           kodakarensis KOD1]
          Length = 228

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LE +L      +G +L+L CG G FS +L      V+ ++ ++  +E AR        + 
Sbjct: 28  LEPLLMKFMKTRGRVLDLACGVGGFSFLLEDLGFEVVGLDNSRFMLEKAREFAKE-KESR 86

Query: 259 VKIVRMSSKEF 269
           V+ +   ++E 
Sbjct: 87  VEFIEGDAREL 97


>gi|325131308|gb|EGC54019.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis M6190]
 gi|325137337|gb|EGC59925.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis ES14902]
          Length = 273

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 35/179 (19%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEI 239
              N  +        H++E VLA      G + +L  G+G  ++ +A  R    V A +I
Sbjct: 75  FAVNPNVLIPRPETEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDI 133

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           + PS+E AR N A      V+    S   F   M  E              ++  I  +P
Sbjct: 134 SPPSLETARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNP 177

Query: 300 P--RSGLDDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
           P   +G    + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 178 PYIENGDKHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|304403943|ref|ZP_07385605.1| Methyltransferase type 11 [Paenibacillus curdlanolyticus YK9]
 gi|304346921|gb|EFM12753.1| Methyltransferase type 11 [Paenibacillus curdlanolyticus YK9]
          Length = 464

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 23/145 (15%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA 252
           +N +  E       G    +LE +   G+F+L   +    +V  ++I++ +++ AR N+A
Sbjct: 245 VNANGKEVTFPYWDGAT--VLECFAHTGSFTLHACKYGAKKVTCLDISEHAIDTARRNVA 302

Query: 253 ANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIH-----------------SYRFKT 294
            N  ++ V+ V   + ++ +   +  + +RL    ++                    +  
Sbjct: 303 RNGFDDRVEFVVADAFDYLRHQAKGVD-DRLARAAVNQEEGRKVDTSKKLQAGGGRTWDV 361

Query: 295 IFVDPPRSGLDD-ATVGMVQAYPHI 318
           + +DPP       A  G V+ Y  I
Sbjct: 362 VVLDPPAFTKTRGAVSGAVRGYKDI 386


>gi|304390025|ref|ZP_07371979.1| HemK family modification methylase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326507|gb|EFL93751.1| HemK family modification methylase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 290

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 15/134 (11%)

Query: 173 VAGRTLIYRQIENSFTQPNAG---INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA 228
           +  R L  R     F         +    ++       +G+   +L+L CG+G   L +A
Sbjct: 78  MYFRHLTLRARPGVFV-VRPETEWVAQGAIDAAADWVRQGVAPRVLDLGCGSGALGLSIA 136

Query: 229 RHFDRVL--AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
               + +  +V++++ +VE    N     V   +++   + +  Q +R       +    
Sbjct: 137 SEVPQSVLTSVDVSEAAVELTAENARFTGVA-ARVLHADATD-PQTLRNALVCAEIPP-- 192

Query: 287 IHSYRFKTIFVDPP 300
               +F  I  +PP
Sbjct: 193 ----QFHVIATNPP 202


>gi|257084461|ref|ZP_05578822.1| modification methylase HemK [Enterococcus faecalis Fly1]
 gi|256992491|gb|EEU79793.1| modification methylase HemK [Enterococcus faecalis Fly1]
          Length = 277

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++  + +
Sbjct: 157 ALGA-GIEFYQGN 168


>gi|255975087|ref|ZP_05425673.1| modification methylase HemK [Enterococcus faecalis T2]
 gi|307285598|ref|ZP_07565737.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0860]
 gi|255967959|gb|EET98581.1| modification methylase HemK [Enterococcus faecalis T2]
 gi|306502822|gb|EFM72087.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0860]
          Length = 277

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|238026174|ref|YP_002910405.1| ribosomal protein L11 methyltransferase [Burkholderia glumae BGR1]
 gi|237875368|gb|ACR27701.1| Ribosomal protein L11 methyltransferase [Burkholderia glumae BGR1]
          Length = 300

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV+ ++I   +VE+AR+N   N  
Sbjct: 156 MEWLEQTVEAGQS-VLDYGCGSGILAI-LAKKCGAGRVIGIDIDPQAVESARHNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|195953159|ref|YP_002121449.1| ribosomal L11 methyltransferase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932771|gb|ACG57471.1| ribosomal L11 methyltransferase [Hydrogenobaculum sp. Y04AAS1]
          Length = 287

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 52/136 (38%), Gaps = 12/136 (8%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLV---LARHFDRVLAVEIAKPSVEAARYNIA 252
             ++  ++    G    +L++ CG+G  ++    L++ +  V  ++I   +++ A  N  
Sbjct: 99  TKLMLSLMKDFIGAYDSVLDVGCGSGILTIASKYLSKSY--VKGIDIDPIAIQEAIENAK 156

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI------DIHSYRFKTIFVDPPRSGLDD 306
            N + ++     S ++     R E    +LK I      D     +  +  +      + 
Sbjct: 157 NNRIEDIHFEVASPEDILIR-RFEYSSKKLKHIKDEFFYDYFIGVYDVVLANLEMHIFEK 215

Query: 307 ATVGMVQAYPHILYIS 322
               + + +   L IS
Sbjct: 216 ELPNIAKLFKKYLTIS 231


>gi|154149607|ref|YP_001403225.1| methyltransferase type 11 [Candidatus Methanoregula boonei 6A8]
 gi|153998159|gb|ABS54582.1| Methyltransferase type 11 [Methanoregula boonei 6A8]
          Length = 287

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 26/71 (36%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +          +L++  G G  ++ LA     + AVE     + A         +NN+ 
Sbjct: 63  TLDDLVVNSSTRVLDIGAGPGTLAIPLAPKVKEITAVEPGAGMIIALEERAGKEGINNIT 122

Query: 261 IVRMSSKEFTQ 271
            VR + +E   
Sbjct: 123 CVRKTWEEVDP 133


>gi|37521085|ref|NP_924462.1| hypothetical protein glr1516 [Gloeobacter violaceus PCC 7421]
 gi|35212081|dbj|BAC89457.1| glr1516 [Gloeobacter violaceus PCC 7421]
          Length = 449

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 208 GIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G    +L+  CG+G  SL LA+     R++ +++++ SV  AR  +A +   + +     
Sbjct: 61  GAGKRILDAGCGSGFTSLALAQANPGARIVGIDLSERSVAVARERLAFHGFKSAEF---- 116

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                 A+  ER     +D D+       +    P  G+  A +    A   IL
Sbjct: 117 -----HALPIERVGELGEDFDL--INCDEVLYLLPDPGVGLAALTGALAPDGIL 163


>gi|134294690|ref|YP_001118425.1| ribosomal protein L11 methyltransferase [Burkholderia vietnamiensis
           G4]
 gi|166223402|sp|A4JBD7|PRMA_BURVG RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|134137847|gb|ABO53590.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia vietnamiensis G4]
          Length = 300

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+    K  Q  +L+  CG+G  ++ LAR      V+ ++I   +VE+AR N   NH 
Sbjct: 156 MEWLEQTVKPGQS-VLDYGCGSGILAI-LARKCGADPVIGIDIDPQAVESARQNSERNHA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|15640177|ref|NP_229804.1| hypothetical protein VC0146 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587728|ref|ZP_01677489.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728307|ref|ZP_01681338.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147674236|ref|YP_001218275.1| hypothetical protein VC0395_A2375 [Vibrio cholerae O395]
 gi|153214835|ref|ZP_01949643.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153818951|ref|ZP_01971618.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|153822321|ref|ZP_01974988.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227080381|ref|YP_002808932.1| Putative methylase [Vibrio cholerae M66-2]
 gi|229508421|ref|ZP_04397925.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae BX
           330286]
 gi|229508898|ref|ZP_04398388.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           B33]
 gi|229517012|ref|ZP_04406458.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           RC9]
 gi|229520065|ref|ZP_04409493.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae TM
           11079-80]
 gi|229525039|ref|ZP_04414444.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           bv. albensis VL426]
 gi|229606694|ref|YP_002877342.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           MJ-1236]
 gi|254291952|ref|ZP_04962733.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254851532|ref|ZP_05240882.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297581817|ref|ZP_06943738.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|9654547|gb|AAF93323.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121548027|gb|EAX58105.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629437|gb|EAX61866.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124115078|gb|EAY33898.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|126510513|gb|EAZ73107.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126520147|gb|EAZ77370.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|146316119|gb|ABQ20658.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|150422162|gb|EDN14128.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227008269|gb|ACP04481.1| Putative methylase [Vibrio cholerae M66-2]
 gi|227011853|gb|ACP08063.1| Putative methylase [Vibrio cholerae O395]
 gi|229338620|gb|EEO03637.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           bv. albensis VL426]
 gi|229342853|gb|EEO07843.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae TM
           11079-80]
 gi|229346075|gb|EEO11047.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           RC9]
 gi|229354015|gb|EEO18948.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           B33]
 gi|229354694|gb|EEO19616.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae BX
           330286]
 gi|229369349|gb|ACQ59772.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           MJ-1236]
 gi|254847237|gb|EET25651.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297533911|gb|EFH72751.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 199

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+           L+L+ G+G      A R  ++V  +E+   + +  + N+ 
Sbjct: 46  VKETLFNWLAQEVPN--ARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQ 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 104 SLKAENIELIHTDALAFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 148

Query: 312 VQ-----AYPHILYISC 323
           ++     A   ++YI C
Sbjct: 149 LEQNGWLAPQAMIYIEC 165


>gi|322421624|ref|YP_004200847.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacter sp. M18]
 gi|320128011|gb|ADW15571.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacter sp. M18]
          Length = 286

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 25/120 (20%)

Query: 188 TQPNAGIN-----VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIA 240
            Q    +        +L         +   +L++  G+G  ++ LA+      + +V+++
Sbjct: 91  FQVTPAVLIPRHDTEVLVTEAVKRGAVARSVLDIGAGSGCVAVALAKALPPAEICSVDVS 150

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++E AR N   N    V   + S  E                       F  +  +PP
Sbjct: 151 GEALEVARGNAERNGAT-VHFFQGSLFE-----------------PFAGRHFDMVVSNPP 192


>gi|126342952|ref|XP_001374866.1| PREDICTED: hypothetical protein [Monodelphis domestica]
          Length = 475

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 64/179 (35%), Gaps = 13/179 (7%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
           + +  LE  L         L   ++ +     + +L    W+  A  L     A++ ++ 
Sbjct: 144 IWSAELEKDLPHSWQCHGDLLLLNENSFKATYWKKLEPGLWKTVASALGGLRLAKRGRVS 203

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYR--QIENSFTQPNAGINVHMLEWVLAATKG 208
             G      I L  D+        G    +   Q   SF         ++ E +  A+  
Sbjct: 204 PGGTRTPKVILLLGDHGWVEHVDNGIRYTFDVTQSMFSF--------GNITEKLRVASMS 255

Query: 209 IQGDLL-ELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             G++L +LY G G F+L   +  +   V A E    +  A + N+  N V +   + +
Sbjct: 256 CAGEVLVDLYAGIGYFTLPFLIHANAAFVHACEWDPHAATALKKNLELNSVADRCCIHL 314


>gi|170729229|ref|YP_001763255.1| ubiquinone biosynthesis O-methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|169814576|gb|ACA89160.1| ubiquinone biosynthesis O-methyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 270

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG G     L++    V  ++ +  +++ AR +   N++ N+      +++   
Sbjct: 75  TMLDIGCGVGLLCEPLSKQGAHVTGIDASCYNIDLARQHAEKNNI-NINYQHCLAEDLLA 133

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
                   N+   I    Y    +             +  V+    ++   C
Sbjct: 134 KQPINIANNQSDRIGSKHY--DVVLNT--------EVIEHVEDQQALIKTCC 175


>gi|331265588|ref|YP_004325218.1| methyltransferase small domain superfamily protein [Streptococcus
           oralis Uo5]
 gi|326682260|emb|CBY99877.1| methyltransferase small domain superfamily protein [Streptococcus
           oralis Uo5]
          Length = 196

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 196 VHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
            +++   + A   +  D  +L+   G G  +L LA+    V  V+I++  +E AR     
Sbjct: 21  ANLVCQAVEAQIDLLSDKKILDFGGGTGLLALPLAQQAKSVTLVDISEKMLEQARLKAEQ 80

Query: 254 NHVNNVKIVRMS 265
             + N++ +   
Sbjct: 81  QDIKNIQFLEQD 92


>gi|315172489|gb|EFU16506.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1346]
          Length = 277

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|307946008|ref|ZP_07661343.1| methyltransferase type 11 [Roseibium sp. TrichSKD4]
 gi|307769672|gb|EFO28898.1| methyltransferase type 11 [Roseibium sp. TrichSKD4]
          Length = 212

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                  L  V++        +LE+ CG G+ +L LA H    LA + A   +E A    
Sbjct: 25  PEAYEVWLAQVIS-CLKKTDRVLEVGCGTGSTALRLAPHVQSFLAADFAPRMIEIAEEKW 83

Query: 252 AANHVNNVKIVRMS--SKEFTQAMRREREF 279
           A +  +N++ V     S+E + A     + 
Sbjct: 84  ATDGADNLRFVCTDPFSEELSPADGEPYDA 113


>gi|241760432|ref|ZP_04758526.1| RNA methyltransferase, RsmD family [Neisseria flavescens SK114]
 gi|241319101|gb|EER55594.1| RNA methyltransferase, RsmD family [Neisseria flavescens SK114]
          Length = 190

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 22/134 (16%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI 251
            +   +  W+     G    +L+L+ G+G   +   +R+  +V+ V+  + +V+  + NI
Sbjct: 39  SVREKLFNWLGQDLTGKT--VLDLFSGSGALGMEAASRNAAKVVMVDNHRQTVQTLQKNI 96

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---- 307
               +  V+IV                   +  +   S +F  +F+DPP +  D      
Sbjct: 97  RELGLKQVEIVCSD---------------GMAYLARPSEKFDVVFLDPPFAWEDWQNLFI 141

Query: 308 TVGMVQAYPHILYI 321
            +        ++YI
Sbjct: 142 RLQSHLKNGAMVYI 155


>gi|238927560|ref|ZP_04659320.1| methyltransferase [Selenomonas flueggei ATCC 43531]
 gi|238884485|gb|EEQ48123.1| methyltransferase [Selenomonas flueggei ATCC 43531]
          Length = 245

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 15/112 (13%)

Query: 202 VLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +LA    + G   +L+L  G G   L++A     V AVE+     E A  N A N +   
Sbjct: 36  LLAHFPTLTGRECVLDLGTGTGIIPLLIADRTAAVTAVELDPVQAELAVRNAALNGL--- 92

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                     T+ +       R          +  +F +PP   +    + M
Sbjct: 93  ----------TEKITVREGDYRDPSALFSCGAYDLVFANPPYRPVGRGALSM 134


>gi|188997006|ref|YP_001931257.1| methyltransferase small [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932073|gb|ACD66703.1| methyltransferase small [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 388

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 60/175 (34%), Gaps = 17/175 (9%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQI-----ENSFT--QPNAGINVHMLEWVLAATKGI 209
           + K+      V E++ +    + +        +  F   Q     N  +     +     
Sbjct: 167 EKKVLFGE--VLEKILIFEYDVKFLVSLQESQKTGFYLDQ---RANRKLT----SEYVKE 217

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLA-VEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +L+L+C  G F +   +     +  V+I+  ++     N   N++ N +IV+    +
Sbjct: 218 GFKVLDLFCNAGGFGIHGGKKGAEFIKFVDISSFALSQVEENARLNNLKNYEIVKDDVFD 277

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
           F +  + + +   L        + +          L   ++ ++    ++   SC
Sbjct: 278 FLKKEKDKYDLIILDPPPFAKSKNEKHDALRGFKYLILNSLKLLNQNGYLAIFSC 332


>gi|188590813|ref|YP_001795413.1| hypothetical protein RALTA_A0018 [Cupriavidus taiwanensis LMG
           19424]
 gi|170937707|emb|CAP62691.1| conserved hypothetical protein; putative methyltransferase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 297

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNN 258
           V AA       +L++ CG G+ +L LARH         V+I+ P +  AR       + N
Sbjct: 45  VQAARNAAAQRILDVGCGTGSTTLALARHIGAQGHCTGVDISGPMLAVARTRAQREGI-N 103

Query: 259 VKIVRMSSKEFTQA 272
              +   ++E   A
Sbjct: 104 ASFIHADAQEHAFA 117


>gi|39997720|ref|NP_953671.1| hypothetical protein GSU2626 [Geobacter sulfurreducens PCA]
 gi|39984612|gb|AAR35998.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gi|298506654|gb|ADI85377.1| SAM-dependent methyltransferase, PUA domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 396

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 14/102 (13%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L+ +  +G++ +  A       L +++++ +      N   N + + V+     +  
Sbjct: 223 KRVLDCFSYSGSWGIHAAAFGAAETLCLDVSERAAALVMANARLNGLGDRVRAEVCDA-- 280

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                     F RL  +     RF  + +DPP        + 
Sbjct: 281 ----------FERLASLRHEGRRFGVVVLDPPAFVKSKKALK 312


>gi|330507918|ref|YP_004384346.1| Met10+ like methyltransferase [Methanosaeta concilii GP-6]
 gi|328928726|gb|AEB68528.1| Met10+ like methyltransferase [Methanosaeta concilii GP-6]
          Length = 329

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           E +     G    +++++ G G FSL +A      +VLA+E+   +      NI  N V 
Sbjct: 168 ERMRMGNLGRGEYVVDMFAGIGYFSLPMAVHSRPRKVLAIELNPNAYHYLCLNIKKNGVE 227

Query: 258 N-VKIVRMSSKEFTQAMRRER 277
             V+ V     + T     +R
Sbjct: 228 RIVEPVLGDCAKVTPEGVADR 248


>gi|322376171|ref|ZP_08050679.1| putative methyltransferase [Streptococcus sp. C300]
 gi|321278853|gb|EFX55898.1| putative methyltransferase [Streptococcus sp. C300]
          Length = 195

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 196 VHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
            +++  V+     +    ++L+   G G  +L LA+    V  V+I++  +E AR     
Sbjct: 21  ANLVCQVVEKQIALLSDKEILDFGGGTGLLALPLAKQAKSVTLVDISEKMLEQARLKAEQ 80

Query: 254 NHVNNVKIVRMS-----SKEFTQAMRREREFNRLKDIDIHSYRF 292
             + N++ +         ++    +   R  + + D+D     F
Sbjct: 81  QDIKNIQFLEQDLLANPLEQQFDLIVVSRVLHHMPDLDATLAMF 124


>gi|319639533|ref|ZP_07994280.1| DNA methylase [Neisseria mucosa C102]
 gi|317399104|gb|EFV79778.1| DNA methylase [Neisseria mucosa C102]
          Length = 190

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 22/134 (16%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI 251
            +   +  W+     G    +L+L+ G+G   +   +RH  +V+ V+  + +V+  + N+
Sbjct: 39  SVREKLFNWLGQDLTGKT--VLDLFSGSGALGMEAASRHAAKVVMVDNHRQTVQTLQKNV 96

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---- 307
               +  V+IV                   +  +   S +F  +F+DPP +  D      
Sbjct: 97  RELGLRQVEIVCSD---------------GMAYLTRPSEKFDVVFLDPPFAWEDWQNLFI 141

Query: 308 TVGMVQAYPHILYI 321
            +        ++YI
Sbjct: 142 RLQSHLKNGAMVYI 155


>gi|309811280|ref|ZP_07705069.1| methyltransferase small domain protein [Dermacoccus sp. Ellin185]
 gi|308434762|gb|EFP58605.1| methyltransferase small domain protein [Dermacoccus sp. Ellin185]
          Length = 221

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 22/119 (18%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A T    G  L++ CG G  +  LA      +V  V++ + +++    N+AA   +NV +
Sbjct: 53  APTPPPSGTFLDVGCGWGPITTTLALRSPSAQVWGVDVNRRALDLCADNVAAQGCSNVAV 112

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
            +                           RF  I+ +PP R G       ++   P ++
Sbjct: 113 AQ-------------------PSQVPDHVRFDLIWSNPPIRVGKKVLHELLLTWLPRLV 152


>gi|256826086|ref|YP_003150046.1| methyltransferase family protein [Kytococcus sedentarius DSM 20547]
 gi|256689479|gb|ACV07281.1| methyltransferase family protein [Kytococcus sedentarius DSM 20547]
          Length = 410

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V        G +L++ CG G  ++ LA+    V A++I+  +V   R       V     
Sbjct: 59  VAEVAGLTPGRVLDIGCGEGADAVWLAQQGWTVTALDISPNAVALTRAAAERAGVE---- 114

Query: 262 VRMSSKEFTQAMRREREFN 280
           V   +  FT+A      F+
Sbjct: 115 VTGIAAPFTEAELAPGSFD 133


>gi|227533723|ref|ZP_03963772.1| methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227188707|gb|EEI68774.1| methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 198

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
             ++  +LA      G +L++  G G   L LA+ F   +V   ++ + ++  A+ N   
Sbjct: 46  RVLIATILADELP-AGPILDVGTGYGPIGLALAKRFPDRQVTMSDVNERALALAQRNATD 104

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++NV IV  S                    D    +F  I  +PP         G++ 
Sbjct: 105 NDISNVTIVESSM------------------YDQIDGQFGVIVTNPPIRAGKTIVSGILA 146

Query: 314 A 314
            
Sbjct: 147 G 147


>gi|256374218|ref|YP_003097878.1| methyltransferase type 11 [Actinosynnema mirum DSM 43827]
 gi|255918521|gb|ACU34032.1| Methyltransferase type 11 [Actinosynnema mirum DSM 43827]
          Length = 354

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +   +L+  CG G  S  LA H DRV+ V+IA   V  AR      H + V+ V   
Sbjct: 58  LGSRVLDFGCGVGRLSNALAAHADRVVGVDIASTMVARARE--LNRHPDRVEFVHYD 112


>gi|254490497|ref|ZP_05103683.1| putative methyltransferase [Methylophaga thiooxidans DMS010]
 gi|224464241|gb|EEF80504.1| putative methyltransferase [Methylophaga thiooxydans DMS010]
          Length = 196

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 18/104 (17%)

Query: 200 EWVLAATKGIQGD--LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           E V    + I GD   L+L+ G+G   L   +R    V+ VE  + + +  + N+ A + 
Sbjct: 42  ETVFNWLQPILGDSRCLDLFAGSGALGLEAASRGAGEVVLVETDRSAYQLLQSNLTALNA 101

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +  ++    +++F  + ++                F  +F+DPP
Sbjct: 102 SQCQLFHGRAEQFLASQKQA---------------FDVVFIDPP 130


>gi|182677769|ref|YP_001831915.1| ribosomal L11 methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|254782830|sp|B2IH12|PRMA_BEII9 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|182633652|gb|ACB94426.1| ribosomal L11 methyltransferase [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 300

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 17/152 (11%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHV 256
           M + V  A    Q  +L+L  G+G  ++  AR    +V A +I K SV AAR N   N V
Sbjct: 150 MFDRVTKARHPKQ--ILDLGTGSGILAMAAARLLHRKVEACDIDKDSVLAARGNARHNGV 207

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
             +    ++S     A+     ++           F  I   P R GL  +   + Q   
Sbjct: 208 ARLVRPVVASGTSHPAIHAGAPYD---------LVFANILARPLR-GLAPSVARVTQRGA 257

Query: 317 HILYISCNPDSLCRDLSILSTTHTIERLALFD 348
            I+        L RD+  + + + I+ +AL D
Sbjct: 258 DIILS----GLLARDVPGVLSAYRIQGMALRD 285


>gi|15678174|ref|NP_275289.1| precorrin-8W decarboxylase [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|48427901|sp|O26249|CBIT_METTH RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|2621187|gb|AAB84652.1| precorrin-8W decarboxylase [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 192

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVR 263
           A  G     +++ CG G  +L LA    RV A++    ++     N+  + + +NV ++ 
Sbjct: 29  AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88

Query: 264 MSSKEFTQAMRREREFNRLKDIDIH 288
             + E            ++ DIDI 
Sbjct: 89  GDAPEALC---------KIPDIDIA 104


>gi|121997376|ref|YP_001002163.1| ubiquinone biosynthesis O-methyltransferase [Halorhodospira
           halophila SL1]
 gi|121588781|gb|ABM61361.1| 3-demethylubiquinone-9 3-methyltransferase [Halorhodospira
           halophila SL1]
          Length = 245

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   LEWV A   G+ G  +L++  G G  +  +AR   +VL ++ A+ +++ A+ +
Sbjct: 38  HDINPIRLEWVEARLGGLAGKRILDVGAGGGLLAEAMARQGAQVLGIDTARQALQTAKLH 97

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRR 275
                +  +     + +E  +  RR
Sbjct: 98  ALEAEITTLDYRVCTVEELAEEARR 122


>gi|88810846|ref|ZP_01126103.1| HemK protein [Nitrococcus mobilis Nb-231]
 gi|88792476|gb|EAR23586.1| HemK protein [Nitrococcus mobilis Nb-231]
          Length = 283

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 198 MLEWVLAATKGI-QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAAN 254
           ++E  LA+  GI Q  +L+L  G+G   L +A  R    V+AV+    ++  AR N    
Sbjct: 103 LVEVALASLTGITQPMVLDLGTGSGAVGLAIATERPDATVVAVDTCPRALAVARCNARRL 162

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            +  V+ +     E     R           D      R  ++  +PP + L       +
Sbjct: 163 GLQRVQFLLGDWLEPAGERRFHLIVANPPYVDPAEPELRCASLRFEPPTALLAPE--QGL 220

Query: 313 QAYPHIL 319
                I+
Sbjct: 221 AELRRIV 227


>gi|240141606|ref|YP_002966086.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Methylobacterium extorquens AM1]
 gi|240011583|gb|ACS42809.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Methylobacterium extorquens AM1]
          Length = 259

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF--- 269
           +L+L CG G+ +  +A     V A+++++  ++A         + NV   R S +     
Sbjct: 48  VLDLGCGGGHVTYAVAPQVRSVTALDLSQTMLDAVAAEAQRRGLANVATRRASVEALPFA 107

Query: 270 ---TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                 +      +   D+         +     R GL D  
Sbjct: 108 DASFDGVVSRYSAHHWGDVPAALREAHRVLAPGGRFGLVDVV 149


>gi|254508787|ref|ZP_05120899.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
 gi|219548307|gb|EED25320.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
          Length = 424

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 30/172 (17%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E    +   LH ++    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 190 KEGLEEVTGVLHGQEPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 237

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +            ++L  +   G F L  L     RV+  ++++P+++ A+YN
Sbjct: 238 RQQAMKYV---------KDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKYN 288

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
              N             +          F  L++      +F  + +DPP+ 
Sbjct: 289 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKF 332


>gi|297196564|ref|ZP_06913962.1| methyltransferase type 11 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723227|gb|EDY67135.1| methyltransferase type 11 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|302607747|emb|CBW45660.1| putative methyltransferase [Streptomyces pristinaespiralis]
          Length = 287

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 47/156 (30%), Gaps = 39/156 (25%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN 258
           V  A       LL++ CG G   L  A         L ++IA+  +E A        ++N
Sbjct: 38  VEHARPQPGQRLLDVGCGLGATLLPAADRIGPTGHALGIDIAEAMIEQAGQEARRQGIDN 97

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           V++  M  +                  D+ +  F  +        L DA           
Sbjct: 98  VELRVMDGEH----------------PDLPARSFDLVLGSYSVIFLPDAR---------- 131

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALF---DQFP 351
                   +L R   +L     I   +     DQFP
Sbjct: 132 -------AALARYADLLRDGGRIAFTSPVFHKDQFP 160


>gi|88601779|ref|YP_501957.1| putative methyltransferase [Methanospirillum hungatei JF-1]
 gi|88187241|gb|ABD40238.1| putative methyltransferase [Methanospirillum hungatei JF-1]
          Length = 253

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                 +E +L         +L+L CG G F+ +LAR   +V  V+     +E A+   A
Sbjct: 33  EQAEEEIEKILDLIDHPVSSVLDLCCGPGRFAGLLAREGYQVTGVDRTPFLLEIAKREYA 92

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFN 280
                 V+ V    +EF +    +   N
Sbjct: 93  DAGE--VEWVLSDMREFVRKESYDLVLN 118


>gi|332534768|ref|ZP_08410595.1| methyltransferase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035792|gb|EGI72277.1| methyltransferase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 396

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 16/122 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
                       +L  +   G FSL  L    + V  V++++P+++ A+ N+  N+++  
Sbjct: 212 RAALERFSKGKTVLNCFSYTGTFSLYALRGGCEHVTNVDVSQPALDTAKRNVEHNNLDLN 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYP 316
            V  V+    +  +  R E              +F TI +DPP+   + A   G  + Y 
Sbjct: 272 KVSFVKQDVFKLLRQYRDE------------GRQFDTIVMDPPKFADNKAQLTGACRGYK 319

Query: 317 HI 318
            I
Sbjct: 320 DI 321


>gi|297627202|ref|YP_003688965.1| transferase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922967|emb|CBL57549.1| transferase [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 505

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
                    G  L+L  G G  SL LARH D V   +I   +++ AR  +A N ++
Sbjct: 160 AQLTVPDRVGSALDLGAGCGVQSLHLARHADTVTLTDINPRALDMARLTLALNGLD 215


>gi|239617032|ref|YP_002940354.1| Methyltransferase type 11 [Kosmotoga olearia TBF 19.5.1]
 gi|239505863|gb|ACR79350.1| Methyltransferase type 11 [Kosmotoga olearia TBF 19.5.1]
          Length = 216

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           LL++  G G ++L  A     V+ ++I+   ++ AR      ++ NV   R S +
Sbjct: 51  LLDIGTGRGRWALYAAPFCKEVIGIDISSNLLKDAREEAEKRNITNVAFYRGSFE 105


>gi|188585313|ref|YP_001916858.1| Methyltransferase type 11 [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350000|gb|ACB84270.1| Methyltransferase type 11 [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 233

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 16/101 (15%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           ER          RQ E+SF          +L            ++L++ CG G  S+ LA
Sbjct: 3   ERWDEIIDWEKRRQSEDSFF-------EKLL------HNHGVENVLDIACGTGFHSIHLA 49

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +    V A + ++  +   + N     + NV      +   
Sbjct: 50  KAGFNVKAADGSEAMLAKTKENAK---LYNVDFEVEKADWL 87


>gi|187736305|ref|YP_001878417.1| PUA domain containing protein [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426357|gb|ACD05636.1| PUA domain containing protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 433

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 17/99 (17%)

Query: 211 GDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             +L+L C +G FS+  A+       V AV++ + +V  A+ N   N    +  V   + 
Sbjct: 261 ATVLDLCCYSGGFSIA-AKMLGGAAEVTAVDLDEKAVAMAKRNGNINR-QRIDFVHADAF 318

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            + + M R            +   F  + +DPP+  +  
Sbjct: 319 VYARQMVR------------NGRLFDAVLLDPPKFIVGR 345


>gi|153004926|ref|YP_001379251.1| putative methyltransferase [Anaeromyxobacter sp. Fw109-5]
 gi|152028499|gb|ABS26267.1| putative methyltransferase [Anaeromyxobacter sp. Fw109-5]
          Length = 179

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
           GD+L+LY G G  +L  L+R   R + VE  + + E    N AA      V + R   +E
Sbjct: 44  GDVLDLYAGTGALALEALSRGCARAVCVEADRGAAELIGRNAAACGFEGRVDVRRGRVEE 103

Query: 269 FTQAMRREREFNRLKDID 286
               +          D  
Sbjct: 104 VVPRLAAGAFALAFVDPP 121


>gi|299535790|ref|ZP_07049111.1| ribosomal protein L11 methyltransferase [Lysinibacillus fusiformis
           ZC1]
 gi|298728990|gb|EFI69544.1| ribosomal protein L11 methyltransferase [Lysinibacillus fusiformis
           ZC1]
          Length = 313

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 81/232 (34%), Gaps = 25/232 (10%)

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           D F    +++ A + E          ++A +  +        + +V+++     +    +
Sbjct: 55  DDFPKDGVIVKAYLSESSFLNETVEEIKAAITNLTNFNIDIGENVVSIV-----EVNEED 109

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN-SF---TQ 189
            A   +   H  K   +                 +E   V+   LI       +F   T 
Sbjct: 110 WATAWKQYYHPVKISERFTIV----------PTWEEYTPVSTDELIIELDPGMAFGTGTH 159

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAAR 248
           P   + +  LE V+         ++++  G+G  S+  A      V A+++ + +V +AR
Sbjct: 160 PTTVMCLQGLEKVIKE----GDTVVDIGTGSGVLSIGAALLGAKSVHALDLDEVAVRSAR 215

Query: 249 YNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            N+A N V + V +   +  +  +        N L +I +         V P
Sbjct: 216 ENVALNKVEDKVAVFHGNLLDTVKEPADVVVANILAEIIMSFTDDAYTIVKP 267


>gi|311744554|ref|ZP_07718354.1| methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311312173|gb|EFQ82090.1| methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 488

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
              L+L  G G  +L LA+H DRV+A ++   ++  A    + N V  V + R S  E  
Sbjct: 155 ARALDLGTGCGVQALHLAQHADRVVATDVNPRALAMAELTASLNGVT-VDVRRGSLFEPV 213

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
              R +        +       + ++ +    G D+    +VQ  P
Sbjct: 214 ATERFDLVATNPPFVVSPPDGDRLVYRETGFEG-DEVVRRIVQGAP 258


>gi|284166307|ref|YP_003404586.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284015962|gb|ADB61913.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 295

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVN 257
           V  +       +L+L  G G F   LA        RV+ V++    +E AR N A     
Sbjct: 114 VAISNLEAGETVLDLGSG-GGFDCFLAAREVGPSGRVIGVDMTPEMLERARENAAEGEFE 172

Query: 258 NVKIVRMSSKEFTQA 272
           NV+      +    A
Sbjct: 173 NVEFRLGEIEHLPVA 187


>gi|283478866|emb|CAY74782.1| UPF0064 protein yccW [Erwinia pyrifoliae DSM 12163]
          Length = 367

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 16/122 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
            +          +L  +   G F++  L  +   V++V+ ++ +++ AR N+A N ++  
Sbjct: 183 RLATRRYAQGRRVLNCFSYTGGFAVSALMGNCTEVISVDTSQVALDVARQNVALNGLDVS 242

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP 316
             + +R    +  +  R E E            +F  I +DPP+   +    +G  + Y 
Sbjct: 243 KAQFLRDDVFKLLRRYRDEGE------------KFDLIIMDPPKFVENKNQLIGACRGYK 290

Query: 317 HI 318
            I
Sbjct: 291 DI 292


>gi|118594304|ref|ZP_01551651.1| modification methylase, HemK family protein [Methylophilales
           bacterium HTCC2181]
 gi|118440082|gb|EAV46709.1| modification methylase, HemK family protein [Methylophilales
           bacterium HTCC2181]
          Length = 283

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 82/232 (35%), Gaps = 47/232 (20%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY------------ 166
           +     ++  +      I  R+A    ++ +Q + +   T++ + R+             
Sbjct: 4   IRSYRKKIGIELQNLSTITAREAELEAQFILQFVLKETSTQLIIGRNKKISENDAGLIES 63

Query: 167 -VDERLTVAGRTLIYRQIENSFT--------QP--NAGINVHMLEWVLAATKGIQG-DLL 214
            V +RL       +++  E  F         Q          M++ ++   K      +L
Sbjct: 64  IVKQRLLGTPLAYLFK--EWDFYGRTYYINQQTLIPRQDTELMIDILIQNNKEDSSLKIL 121

Query: 215 ELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L  G+G   L LA HF   ++   +I+  +++ A+ N   + + N++ V          
Sbjct: 122 DLGTGSGVIGLTLAHHFFNAQITLSDISSEAIKVAKINGGNSGLKNIQFV---------- 171

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM--VQAYPHILYIS 322
                 F ++        +F  I  +PP    +D  +    +   P I  +S
Sbjct: 172 --ESNWFEKIP-----PGKFDVIVSNPPYIPKNDKHLKHPELLEQPQIALMS 216


>gi|24414824|emb|CAD55637.1| putative Mg-protoporphyrin IX methyl transferase [Synechococcus
           elongatus PCC 7942]
          Length = 239

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH-----MLEWVLAATKGIQGDLLELYC 218
           RDY +        + IY   E +F Q N  I        +L W+ A          +  C
Sbjct: 11  RDYFNAT-GFDRWSRIYGDGEVNFVQKNIRIGHQRTVDTVLSWLEADGNLSDRSFCDAGC 69

Query: 219 GNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G G+ SL LA+   + V A +I+   VE AR   +   + N+  +++   +  
Sbjct: 70  GVGSLSLPLAQRGAQAVYASDISAKMVEEARERAS--QIPNLNNIQLEVSDLA 120


>gi|312878905|ref|ZP_07738705.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Aminomonas paucivorans DSM 12260]
 gi|310782196|gb|EFQ22594.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Aminomonas paucivorans DSM 12260]
          Length = 429

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 13/138 (9%)

Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
           VLA    ++G  +LE+  G G  +  LAR   RV+++E    + + A  ++    + + V
Sbjct: 265 VLALLAPLEGSRILEIGTGTGGVTAELARAGSRVVSLERNPEARDLAARHLERLGLGDQV 324

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           ++V  S+ E    +    E    +   +  +            G+ D T+  +     I+
Sbjct: 325 RLVAGSAPEALVDL----EEPPFQGAFVGGHGPDL-------EGVLDGTLARLTPKGRIV 373

Query: 320 YISCNPDSLCRDLSILST 337
             S    +  R L  L  
Sbjct: 374 VASLGLATAPRTLEHLER 391


>gi|294815345|ref|ZP_06773988.1| Putative RNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326443699|ref|ZP_08218433.1| putative RNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294327944|gb|EFG09587.1| Putative RNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 200

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            + +LY G+G   L  L+R     L VE    +    R N+ +  +   ++    +++  
Sbjct: 48  RIADLYAGSGAVGLEALSRGAAHALLVEADARAARTVRENVRSLGLPGAEVRTGRAEQIV 107

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                             +  +  +F+DPP +  DD    ++
Sbjct: 108 SG-------------PAPADPYDVVFLDPPYAVTDDDLREIL 136


>gi|254392466|ref|ZP_05007646.1| RNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|197706133|gb|EDY51945.1| RNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 197

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            + +LY G+G   L  L+R     L VE    +    R N+ +  +   ++    +++  
Sbjct: 45  RIADLYAGSGAVGLEALSRGAAHALLVEADARAARTVRENVRSLGLPGAEVRTGRAEQIV 104

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                             +  +  +F+DPP +  DD    ++
Sbjct: 105 SG-------------PAPADPYDVVFLDPPYAVTDDDLREIL 133


>gi|71900252|ref|ZP_00682389.1| Modification methylase HemK [Xylella fastidiosa Ann-1]
 gi|71729965|gb|EAO32059.1| Modification methylase HemK [Xylella fastidiosa Ann-1]
          Length = 275

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L       +  + +L  G+G  +L +A  R   +VLA + +  +++ A  N 
Sbjct: 91  TETLVEQALQRLDHASERRVADLGTGSGAIALAIACERPQAQVLATDNSAAALDIAARNA 150

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +A+ +N+V     +   + +A+  ER              F  I  +PP
Sbjct: 151 SAHGLNHVVFREGN---WYEALLGER--------------FDLIVSNPP 182


>gi|329940318|ref|ZP_08289599.1| methyltransferase type 11 [Streptomyces griseoaurantiacus M045]
 gi|329300379|gb|EGG44276.1| methyltransferase type 11 [Streptomyces griseoaurantiacus M045]
          Length = 273

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            +L++ CG G  +  LA       V  V+ A   +E AR   A   + N+       
Sbjct: 43  KVLDIGCGPGTITADLAELVPDGHVTGVDRAPEILEQARATAAGRGLTNIDFAVADV 99


>gi|328884483|emb|CCA57722.1| SAM-dependent methyltransferases [Streptomyces venezuelae ATCC
           10712]
          Length = 410

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/207 (21%), Positives = 65/207 (31%), Gaps = 38/207 (18%)

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
           S +   +  +  H  L          L  AL       +L   +      L RD+  E +
Sbjct: 10  STTGPTMGRVTDHAFLAPLLTPEGQTLLTALRDHDPAQELAVVSR-----LRRDHPAELV 64

Query: 172 TVAGRTLIYRQIENS-----------FTQPN----AGINVHMLEWVLAATKGIQGDLLEL 216
             A      RQ   +           FT PN    +                    + +L
Sbjct: 65  MAAVGQARLRQRAVAKFGAEDAYLMYFT-PNGVEQSTRASVGTYRAARMKALGVRSVADL 123

Query: 217 YCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
             G G  ++ LAR    VLAV+    + E AR N  A  +  +  VR +           
Sbjct: 124 CSGIGGDAIALARAGISVLAVDRDPLTAEVARANAEALGLGELIEVRCA----------- 172

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSG 303
                + +ID   Y    +FVDP R G
Sbjct: 173 ----DVAEIDTSPY--DAVFVDPARRG 193


>gi|312137498|ref|YP_004004835.1| precorrin-6y c5,15-methyltransferase (decarboxylating), cbit
           subunit [Methanothermus fervidus DSM 2088]
 gi|311225217|gb|ADP78073.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanothermus fervidus DSM 2088]
          Length = 187

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVK 260
           +  A       ++E+ CG G  ++ LA+   R+ A++    ++   R N+     ++ V 
Sbjct: 26  LCKARIKKNDYVVEVGCGTGAITIELAKKAGRIDAIDKNIKAINLTRKNLKKQGLLDRVN 85

Query: 261 IVRMSSKEFTQAMR 274
           I+   + E  + ++
Sbjct: 86  IIHGEATEVLKNLK 99


>gi|294635661|ref|ZP_06714135.1| methyltransferase [Edwardsiella tarda ATCC 23685]
 gi|291090991|gb|EFE23552.1| methyltransferase [Edwardsiella tarda ATCC 23685]
          Length = 396

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 16/122 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
            + A        +L  +   G F++  L     +V +V+ ++ +++ AR N+  N ++  
Sbjct: 211 RLAARRFARDAHVLNCFSYTGAFAISALMGGCAQVTSVDTSQAALDIARQNVELNGLDLA 270

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP 316
             + +R    +  Q +RR R+             F  I +DPP+   +     G  + Y 
Sbjct: 271 RAEFLR---DDVFQLLRRYRD---------EGKTFDLIVMDPPKFVENKSQLAGACRGYK 318

Query: 317 HI 318
            I
Sbjct: 319 DI 320


>gi|284990875|ref|YP_003409429.1| ubiquinone biosynthesis O-methyltransferase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064120|gb|ADB75058.1| ubiquinone biosynthesis O-methyltransferase [Geodermatophilus
           obscurus DSM 43160]
          Length = 258

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           V +LE +     G+    L++ CG G  +   AR   RV+ V+ + PS+E AR + A   
Sbjct: 38  VAVLERLGRRPSGL--RALDIGCGGGFLAEEFARLGCRVVGVDPSAPSIETARRHAADRG 95

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +      R+ S E       E +     D+  H      +  +  R+
Sbjct: 96  LE--IDYRVGSGEHLPVEDGEFDLAYCCDVLEHVDDLDQVIHETARA 140


>gi|227495019|ref|ZP_03925335.1| polypeptide chain release factor methyltransferase [Actinomyces
           coleocanis DSM 15436]
 gi|226831471|gb|EEH63854.1| polypeptide chain release factor methyltransferase [Actinomyces
           coleocanis DSM 15436]
          Length = 280

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 41/134 (30%), Gaps = 8/134 (5%)

Query: 195 NVHMLEWVLAATKGIQG-----DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
              ++E  L             + L+L  G+G  +L L  +    +V  +E +  ++  A
Sbjct: 93  TETLVETALNWGSSESKTAENLEALDLCSGSGAIALALQANLPNWQVTGLEQSSTALGNA 152

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + N     +  V+  +  +       R +          I            P + L   
Sbjct: 153 QENAEKLGLP-VRFEQGDATVVNPQWRSKMSLVVSNPPYIPPRTLPAETTYEPAAALWGF 211

Query: 308 TVGMVQAYPHILYI 321
               ++    I+ +
Sbjct: 212 GEDGMEIPAKIIEV 225


>gi|45185833|ref|NP_983549.1| ACR147Cp [Ashbya gossypii ATCC 10895]
 gi|44981623|gb|AAS51373.1| ACR147Cp [Ashbya gossypii ATCC 10895]
          Length = 311

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 11/118 (9%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                          + A       +L+++CG G   +  A+ F +V  VE+    +   
Sbjct: 97  YSVTPERVAKFTAAFIEACLPGATTILDVFCGGGGNVVHFAKVFQKVYGVELKLEHLYCT 156

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
             N  A  V     V +   ++ Q   R R                 +F  PP  G+D
Sbjct: 157 YRNAEAYGV--ADRVWLKHGDWLQLAARGR---------FERVHVDCVFASPPWGGID 203


>gi|163847401|ref|YP_001635445.1| ribosomal protein L11 methyltransferase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525250|ref|YP_002569721.1| ribosomal protein L11 methyltransferase [Chloroflexus sp. Y-400-fl]
 gi|259534492|sp|A9WD89|PRMA_CHLAA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|259534495|sp|B9LFP4|PRMA_CHLSY RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|163668690|gb|ABY35056.1| ribosomal protein L11 methyltransferase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449129|gb|ACM53395.1| ribosomal protein L11 methyltransferase [Chloroflexus sp. Y-400-fl]
          Length = 328

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 35/207 (16%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY------------ 166
           V L  +  LD    E   ++  AL    +QI+ +G   +T+   + D+            
Sbjct: 57  VWLRTYLPLDAQAEETRQQIEHAL-WHVHQIRPLGPI-QTRTLAEEDWANAWKQFYPVLR 114

Query: 167 VDERLTVAGRTLIYRQIEN----------SF---TQPNAGINVHMLEWVLAATKGIQGDL 213
           V ER  +    L Y+   N          +F     P   + +H+LE ++   +     +
Sbjct: 115 VGERTVIVPSWLEYQPQPNDVVLLLDPGMAFGTGLHPTTRLCLHLLERLVQPGQ----QV 170

Query: 214 LELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR---MSSKEF 269
           L+L  G+G  ++  A+    +VLA++    +V  A  N+  N V ++  V    + + + 
Sbjct: 171 LDLGTGSGILAIAAAKLGAGQVLALDNDPIAVRVAHENVERNQVQDLVTVAEGSLGAGQA 230

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIF 296
                         D  +H    +  F
Sbjct: 231 MGHWLSGDFGPETPDPTLHDNTPQATF 257


>gi|332360649|gb|EGJ38458.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           SK49]
          Length = 276

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 37/192 (19%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E + + RD L A   Q QL+       I    D+    L V  R LI R           
Sbjct: 46  EVSQKDRDQLKAI--QEQLLVHKPAQYIIGSSDFHGLTLKVDERVLIPRPE--------- 94

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYN 250
                +++ +L+        +L++  G+G  +L LA  R   ++ A +++  ++  A  N
Sbjct: 95  --TEELVDLILSENPETSLSVLDIGTGSGAIALALANSRPDWQITASDLSGDALSLATEN 152

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDA 307
             ++ + N+  V+    +  Q                   +F  I  +PP    +  D+ 
Sbjct: 153 AQSSGL-NLVFVQSDCLDAIQ------------------RKFDIIVSNPPYISEADKDEV 193

Query: 308 TVGMVQAYPHIL 319
            + ++ + PH+ 
Sbjct: 194 GLNVLTSEPHMA 205


>gi|325567403|ref|ZP_08144070.1| methyltransferase domain protein [Enterococcus casseliflavus ATCC
           12755]
 gi|325158836|gb|EGC70982.1| methyltransferase domain protein [Enterococcus casseliflavus ATCC
           12755]
          Length = 201

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
            D+      + G+   +      F++        +L       +  +G LL++ CG G  
Sbjct: 14  HDFEQWSFELRGKKFHFVTDSGVFSRDTVDYGSRVLIDAFEWAELPEGSLLDVGCGYGPV 73

Query: 224 SLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
            L LA    R V  ++I + +V+ A+ N   N +  V I +
Sbjct: 74  GLALAYASQRPVEMIDINQRAVDLAKGNAQRNGIEQVDIHQ 114


>gi|306820673|ref|ZP_07454301.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551283|gb|EFM39246.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 290

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 27/163 (16%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGI-NVHMLEWVLAATKGIQGD----LLELYCGNGNFSLV 226
            ++ R LI+      F   + GI     + W  A  K    D    +L L+   G  +  
Sbjct: 76  NISYRDLIFNVKPTGFK--HTGIFPEQAVNWDYAKEKIENSDKNIKVLNLFAYTGCATCN 133

Query: 227 LARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
            ++     V+ V+ +K   + A+ N     + N   +R    +  + + +E    R    
Sbjct: 134 ASKSGAKEVVHVDASKGMTQIAKENAKLCGIEN-NFIRYIVDDVFKFIEKEIRRGR---- 188

Query: 286 DIHSYRFKTIFVDPPRSG---------LDDATVGMVQAYPHIL 319
                ++  + +DPP  G         L+D+ + ++     +L
Sbjct: 189 -----KYDAVIMDPPSYGRGTNGEIWKLEDSLIKLLSLINQVL 226


>gi|269958824|ref|YP_003328612.1| 3-demethylubiquinone-9 3-methyltransferase [Anaplasma centrale str.
           Israel]
 gi|269848654|gb|ACZ49298.1| 3-demethylubiquinone-9 3-methyltransferase [Anaplasma centrale str.
           Israel]
          Length = 235

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 3/120 (2%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKG--IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           + S       +N   +++VL+       +  LL++ CG G F+  +A     V  V+ ++
Sbjct: 23  DGSSFSVLHKVNPVRVKYVLSQLDSGLSKCSLLDIGCGGGIFAESMASLGFSVTGVDPSQ 82

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            S+E A  +  A  ++ ++       +F+   +   +   L ++  H    ++   D  R
Sbjct: 83  ESIEVATAHARAAGLD-IQYHCAHLDQFSANRQEVYDIVTLMEVVEHVTDLESCLNDACR 141


>gi|269303407|gb|ACZ33507.1| conserved hypothetical protein [Chlamydophila pneumoniae LPCoLN]
          Length = 275

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L+  +   K  Q  +L L+   G  S+  A+   RV  V+ ++ +V  A+ N+  N    
Sbjct: 97  LKQAIEKHKECQ--VLNLFAYTGAGSIFAAKCGARVTHVDASQAAVRWAQRNVEKNAFPE 154

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            +I              E   + LK     + +++ I +DPP  G   
Sbjct: 155 RRIF----------WVIEDVISFLKKEIRRNKKYQVILLDPPSYGRGP 192


>gi|238894022|ref|YP_002918756.1| putative SAM-dependent methyltransferase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546338|dbj|BAH62689.1| putative SAM-dependent methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 411

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L     +V +V+ ++ +++ AR N+  N ++  
Sbjct: 227 RLATRRYVADKRVLNCFSYTGGFAVSALMGGCRQVTSVDTSQEALDVARQNVEINGLD-- 284

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
               +S  EF     R+  F  L+       +F  I +DPP+   +    +G  + Y  I
Sbjct: 285 ----LSKAEFV----RDDVFKLLRKYRDQGEKFDVIVMDPPKFVENKSQLMGACRGYKDI 336


>gi|225164443|ref|ZP_03726701.1| transcriptional regulator, ArsR family [Opitutaceae bacterium TAV2]
 gi|224800941|gb|EEG19279.1| transcriptional regulator, ArsR family [Opitutaceae bacterium TAV2]
          Length = 310

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            + +L  G G  S +LAR   +V  ++ +   VE      A N + N+       +  
Sbjct: 149 TIADLGAGEGLISQLLARRARQVWCIDNSPRMVEVGTELAAKNGLANLTYKLGDIERV 206


>gi|170692040|ref|ZP_02883204.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia graminis C4D1M]
 gi|170143324|gb|EDT11488.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia graminis C4D1M]
          Length = 217

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 196 VHMLE------WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            HML        +          +LE+  G+G  + +LA     VL V+I     E AR 
Sbjct: 58  QHMLAPRVEARTLQELAVKKHESVLEIGAGSGYMAALLAHRAQHVLTVDIEPELAELART 117

Query: 250 NIAANHVNNVKIVRMSSK 267
           N+ AN V N ++    + 
Sbjct: 118 NLIANGVLNAEVATGDAA 135


>gi|56751088|ref|YP_171789.1| Mg-protoporphyrin IX methyl transferase [Synechococcus elongatus
           PCC 6301]
 gi|81299250|ref|YP_399458.1| Mg-protoporphyrin IX methyl transferase [Synechococcus elongatus
           PCC 7942]
 gi|56686047|dbj|BAD79269.1| Mg-protoporphyrin IX methyl transferase [Synechococcus elongatus
           PCC 6301]
 gi|81168131|gb|ABB56471.1| magnesium protoporphyrin O-methyltransferase [Synechococcus
           elongatus PCC 7942]
          Length = 229

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH-----MLEWVLAATKGIQGDLLELYC 218
           RDY +        + IY   E +F Q N  I        +L W+ A          +  C
Sbjct: 11  RDYFNAT-GFDRWSRIYGDGEVNFVQKNIRIGHQRTVDTVLSWLEADGNLSDRSFCDAGC 69

Query: 219 GNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G G+ SL LA+   + V A +I+   VE AR   +   + N+  +++   +  
Sbjct: 70  GVGSLSLPLAQRGAQAVYASDISAKMVEEARERAS--QIPNLNNIQLEVSDLA 120


>gi|145222896|ref|YP_001133574.1| HemK family modification methylase [Mycobacterium gilvum PYR-GCK]
 gi|315443361|ref|YP_004076240.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Mycobacterium sp. Spyr1]
 gi|145215382|gb|ABP44786.1| modification methylase, HemK family [Mycobacterium gilvum PYR-GCK]
 gi|315261664|gb|ADT98405.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Mycobacterium sp. Spyr1]
          Length = 289

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +LEW LA        +++L  G+G  +L LA+ F    V AV+ +  ++   R N A
Sbjct: 101 TESLLEWALAQPLSGSARIVDLCTGSGALALALAQGFPGATVFAVDDSDDALVYTRRNTA 160

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKD--IDIHSYRFKTIFVDPPRS 302
              V+ V+     +   T+  R             D      +    DP  +
Sbjct: 161 GTAVHVVRADVTDAGLLTELDRSVDLLVSNPPYIPDAAELEPEVAEHDPAHA 212


>gi|311114830|ref|YP_003986051.1| protein-(glutamine-N5) methyltransferase [Gardnerella vaginalis
           ATCC 14019]
 gi|310946324|gb|ADP39028.1| protein-(glutamine-N5) methyltransferase [Gardnerella vaginalis
           ATCC 14019]
          Length = 302

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 19/125 (15%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251
           +    L+W + A       +L+L  G+G   L +A      +V AVE +  + E  + N 
Sbjct: 105 VVQEGLDW-IRANNLKNPIVLDLCAGSGAIGLSVASEVADAQVWAVEKSPKAFEYLQKNY 163

Query: 252 -----AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                  N +N    +   +               L +      +   +  +PP      
Sbjct: 164 NKIAEKYNILNRYHAILGDATNV-----------NLPEKAAIKEKVDVVITNPPYVPESQ 212

Query: 307 ATVGM 311
               +
Sbjct: 213 PVEQI 217


>gi|262197594|ref|YP_003268803.1| methyltransferase type 11 [Haliangium ochraceum DSM 14365]
 gi|262080941|gb|ACY16910.1| Methyltransferase type 11 [Haliangium ochraceum DSM 14365]
          Length = 264

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAAN 254
           M   +  A  G    +L++ CG+G  S ++A        V+ ++    +V+ AR  + A+
Sbjct: 22  MARLLRDAGIGAGMRVLDVGCGHGRVSRMIAALVGEGGAVIGLDRDAGAVDTARAAMRAS 81

Query: 255 HVNNVKIVRMS 265
            + N + V   
Sbjct: 82  GIANAEFVCGD 92


>gi|182439571|ref|YP_001827290.1| hypothetical protein SGR_5778 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178468087|dbj|BAG22607.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 497

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            + +   G + D+L+L CG G+ SL+ A    RV AV+ +    + AR           +
Sbjct: 33  RLESWLPGTRADVLDLGCGTGSLSLLAAGQGHRVTAVDRSPRMADRAR--AKLAG-TGAE 89

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           ++   +        R     R+ D+ +  +    +++ P  +       G+++    ++ 
Sbjct: 90  VLVGDAA-------RPPVGERVFDVVVARH---VVWLLPDPAAALKHWFGLLKPGGRLVL 139

Query: 321 I 321
           +
Sbjct: 140 V 140


>gi|217978193|ref|YP_002362340.1| Mg-protoporphyrin IX methyl transferase [Methylocella silvestris
           BL2]
 gi|217503569|gb|ACK50978.1| magnesium protoporphyrin O-methyltransferase [Methylocella
           silvestris BL2]
          Length = 233

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AAN 254
             +L W+     G+   LL+  CG+G F++  AR    V+A++++   +E AR       
Sbjct: 50  QTLLSWLPDDLSGL--RLLDAGCGSGAFAVEAARRGATVVAIDLSPTLIELARERTPQGL 107

Query: 255 HVNNVKIVRMSSKE 268
               V+ +     +
Sbjct: 108 GRGKVEFIAGDMLD 121


>gi|150389413|ref|YP_001319462.1| methyltransferase type 11 [Alkaliphilus metalliredigens QYMF]
 gi|149949275|gb|ABR47803.1| Methyltransferase type 11 [Alkaliphilus metalliredigens QYMF]
          Length = 250

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N    +  +E +       + ++LEL CG GN ++ LA+   R+ A ++++  +  A  
Sbjct: 19  VNYPQWIDYIEEIFKRENLTEKEVLELACGTGNITMPLAKRGYRITASDLSQDMLTVAHE 78

Query: 250 NIAANHVNNVKIVRMSSKEF 269
               NHV+ V  V  +  E 
Sbjct: 79  KSLENHVD-VVFVNQNMAEI 97


>gi|301777476|ref|XP_002924156.1| PREDICTED: trimethylguanosine synthase-like [Ailuropoda
           melanoleuca]
          Length = 852

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS 265
           +++ +CG G  ++  A    RV+A++I    ++ AR N     + + ++ +   
Sbjct: 693 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGD 746


>gi|257469306|ref|ZP_05633400.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium
           ulcerans ATCC 49185]
 gi|317063553|ref|ZP_07928038.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium
           ulcerans ATCC 49185]
 gi|313689229|gb|EFS26064.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium
           ulcerans ATCC 49185]
          Length = 225

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVR 263
              +G +L++  GNG   ++L+     + +  ++I + ++E A  NI  N +  N+KIV 
Sbjct: 38  YPKKGKILDIGTGNGVIPILLSSKEKGEDITGIDIQEENIELAEKNIELNCLKENIKIVH 97

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP-PRSGLDDATVGMVQAYPHIL 319
              KE++     +   +    +++   +   +      R  +      +VQ+   +L
Sbjct: 98  GDVKEYSMGNSFDYIVSNPPYMEVDGKKQNILSCKSIARHEIKLNLSQLVQSAKRLL 154


>gi|259908873|ref|YP_002649229.1| SAM-dependent methyltransferase [Erwinia pyrifoliae Ep1/96]
 gi|224964495|emb|CAX56005.1| SAM-dependent methyltransferase [Erwinia pyrifoliae Ep1/96]
          Length = 396

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 16/122 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
            +          +L  +   G F++  L  +   V++V+ ++ +++ AR N+A N ++  
Sbjct: 212 RLATRRYAQGRRVLNCFSYTGGFAVSALMGNCTEVISVDTSQVALDVARQNVALNGLDVS 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP 316
             + +R    +  +  R E E            +F  I +DPP+   +    +G  + Y 
Sbjct: 272 KAQFLRDDVFKLLRRYRDEGE------------KFDLIIMDPPKFVENKNQLIGACRGYK 319

Query: 317 HI 318
            I
Sbjct: 320 DI 321


>gi|134046081|ref|YP_001097567.1| methyltransferase [Methanococcus maripaludis C5]
 gi|132663706|gb|ABO35352.1| methyltransferase [Methanococcus maripaludis C5]
          Length = 253

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++++ G G F++ +A++     + A+E+   S      NI  N + NV  +   +++F+
Sbjct: 103 VVDMFAGIGYFTIPIAKYSNPKMIYALELNPDSYHHLSENIKLNKIENVTPILGDNRDFS 162


>gi|94985288|ref|YP_604652.1| methyltransferase type 11 [Deinococcus geothermalis DSM 11300]
 gi|94555569|gb|ABF45483.1| Methyltransferase type 11 [Deinococcus geothermalis DSM 11300]
          Length = 262

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + G +LE+  G G  +  LAR   RV+ +E +   +E  R       ++ +  V+  +  
Sbjct: 47  VGGPVLEVGAGTGRVTAFLARRGVRVVGLEPSARMIERGRARAKEQGLD-LTFVQGDAGS 105

Query: 269 F 269
           F
Sbjct: 106 F 106


>gi|73999118|ref|XP_857350.1| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 3
           [Canis familiaris]
          Length = 267

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS 265
           +++ +CG G  ++  A    RV+A++I    ++ AR N     + + ++ +   
Sbjct: 108 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGD 161


>gi|73999116|ref|XP_857311.1| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 2
           [Canis familiaris]
          Length = 330

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS 265
           +++ +CG G  ++  A    RV+A++I    ++ AR N     + + ++ +   
Sbjct: 171 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGD 224


>gi|73999114|ref|XP_535077.2| PREDICTED: similar to PRIP-interacting protein PIPMT isoform 1
           [Canis familiaris]
          Length = 852

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS 265
           +++ +CG G  ++  A    RV+A++I    ++ AR N     + + ++ +   
Sbjct: 693 VVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGIADKIEFICGD 746


>gi|73539988|ref|YP_294508.1| SAM-dependent methyltransferase [Ralstonia eutropha JMP134]
 gi|72117401|gb|AAZ59664.1| SAM-dependent methyltransferase [Ralstonia eutropha JMP134]
          Length = 398

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++L  +C  G FSL  L      V +++ +  +++ A  N+  N  +          E  
Sbjct: 224 EVLNCFCYTGGFSLAALRGGATSVTSIDSSGEALKIAAGNVTLNGFD----------ENR 273

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
                   F  L++      +F  I +DPP+       +    +AY  I
Sbjct: 274 ATWLDADVFKTLREFRAEGRQFDLIVLDPPKFAPSSQHIDRAARAYKEI 322


>gi|51891645|ref|YP_074336.1| ribosomal protein L11 methyltransferase [Symbiobacterium
           thermophilum IAM 14863]
 gi|60390360|sp|Q67S51|PRMA_SYMTH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|51855334|dbj|BAD39492.1| ribosomal protein L11 methyltransferase [Symbiobacterium
           thermophilum IAM 14863]
          Length = 304

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 7/131 (5%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D  R   +   D  HA K   +     ++  +        E        L  R       
Sbjct: 93  DPARFRWVEEEDWAHAWKAYFRPTRVGDRLVVV----PAWEEYAPQEGELPIRIDPGMAF 148

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEA 246
                    +    L         ++++  G+G  ++  A+H     V+A+++   +V+A
Sbjct: 149 GTGTHATTALCMRWLEELVTPGSRVIDVGTGSGILAVA-AKHLGAAEVVAIDVDPVAVDA 207

Query: 247 ARYNIAANHVN 257
           AR N   N V 
Sbjct: 208 ARENAGRNGVE 218


>gi|28899731|ref|NP_799336.1| hypothetical protein VP2957 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153840067|ref|ZP_01992734.1| putative methyltransferase [Vibrio parahaemolyticus AQ3810]
 gi|260361294|ref|ZP_05774399.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus K5030]
 gi|260879108|ref|ZP_05891463.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus
           AN-5034]
 gi|260897984|ref|ZP_05906480.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus
           Peru-466]
 gi|260899651|ref|ZP_05908046.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus AQ4037]
 gi|28807983|dbj|BAC61220.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149746339|gb|EDM57394.1| putative methyltransferase [Vibrio parahaemolyticus AQ3810]
 gi|308087169|gb|EFO36864.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus
           Peru-466]
 gi|308089651|gb|EFO39346.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus
           AN-5034]
 gi|308106733|gb|EFO44273.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus AQ4037]
 gi|308111828|gb|EFO49368.1| RNA methyltransferase, RsmD family [Vibrio parahaemolyticus K5030]
 gi|328472442|gb|EGF43308.1| hypothetical protein VP10329_00373 [Vibrio parahaemolyticus 10329]
          Length = 199

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G       +R  + V  +E+   + +  + N+A
Sbjct: 46  VKETLFNWLAQDVP--QAKCLDLFAGSGGLGFESASRQAELVTMIELNPQAFQQLQKNVA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N+++V   +  F +                       +F+DPP R GL D TV +
Sbjct: 104 SLKATNIQVVNTDALSFLKQ---------------PGTPHHVVFIDPPFRKGLLDETVTL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LEQNGWLAEDAMIYI 163


>gi|75760509|ref|ZP_00740546.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492009|gb|EAO55188.1| SAM-dependent methyltransferase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 238

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + +LA  F+ V+A+++ +  +E A+  I  N 
Sbjct: 8   QYVVQQVASRHNN---RLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEEAKGFIKQNG 64

Query: 256 VNNVKIVRMSSKEFTQA 272
             NV  V  ++++   A
Sbjct: 65  HGNVSFVVGNAEDLPFA 81


>gi|332525469|ref|ZP_08401627.1| type 11 methyltransferase [Rubrivivax benzoatilyticus JA2]
 gi|332108736|gb|EGJ09960.1| type 11 methyltransferase [Rubrivivax benzoatilyticus JA2]
          Length = 247

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           L+  CG G   +  AR    V+ V+I+   +  AR N     ++NV
Sbjct: 67  LDFGCGVGRLVMPFARLGGEVVGVDISPSMLAEARRNCDQAGLSNV 112


>gi|322487947|emb|CBZ23193.1| putative arginine N-methyltransferase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 399

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
              +  + +         LL L CG G ++++ AR     V+ V+ +   V+AAR     
Sbjct: 58  QQRLRAYEVIFRNVRGKTLLHLGCGMGLYTMLAARGMAKMVIGVDSSAI-VDAARVVAEQ 116

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N + N+  +R    +    +    +F+ +    +         +       D        
Sbjct: 117 NGLKNILFIRGRLCDALHQLPAGMKFDYVLCEWMGPLLLNERVLTDALYARDHLLTASGA 176

Query: 314 AYP-----HILYIS 322
             P     H++ +S
Sbjct: 177 LCPNRASLHVVAVS 190


>gi|295702995|ref|YP_003596070.1| methyltransferase domain-containing protein [Bacillus megaterium
           DSM 319]
 gi|294800654|gb|ADF37720.1| Methyltransferase domain protein [Bacillus megaterium DSM 319]
          Length = 257

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
              A +   G LL++  G G+ +  LA  F  V A ++    +++A   I  N   NV  
Sbjct: 34  AEIAEENRGGKLLDVATGGGHVANKLAPVFQEVTAFDLTPQMLQSAEVFIKENGYENVSF 93

Query: 262 VRMSSKE 268
           V+  +++
Sbjct: 94  VQGDAED 100


>gi|269961512|ref|ZP_06175875.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833741|gb|EEZ87837.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 199

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G       +R  + V  +E+   + +  + N+ 
Sbjct: 46  VKETLFNWLAQDVP--QAKCLDLFAGSGGLGFESASRQAELVTMIELNPQAFQQLQKNVT 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           + + NN+ +V   +  F Q                       +F+DPP R GL D TV +
Sbjct: 104 SLNANNIHVVNTDAISFLQQ---------------PGTPHHVVFIDPPFRKGLLDETVTL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LEQNGWLAEDAMIYI 163


>gi|167630501|ref|YP_001681000.1| ribosomal protein l11 methyltransferase [Heliobacterium
           modesticaldum Ice1]
 gi|226710088|sp|B0TAD9|PRMA_HELMI RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|167593241|gb|ABZ84989.1| ribosomal protein l11 methyltransferase [Heliobacterium
           modesticaldum Ice1]
          Length = 316

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 7/172 (4%)

Query: 97  EPLLRAKLF-QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
           E ++R K +  ID    +   A+   +  R   + W   A  + D LH   +        
Sbjct: 59  EGMIRVKTYLAIDNTLEERLAALQEELSARERSEKWPAHAWTMTD-LHEDDWAHAWKAFF 117

Query: 156 NKTKI---CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
              K+    + R   +E +      L+                  M    L      +  
Sbjct: 118 KPEKVGRRVVIRPTWEEYVP-KEDDLVISIDPGMAFGTGTHPTTVMCIRALEDYVHAEAH 176

Query: 213 LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           +L++  G+G  S+  A     RVLAV+    +V  A+ N+  N V+ +  VR
Sbjct: 177 VLDVGTGSGVLSIAAALLGAKRVLAVDNDPVAVATAQENVILNQVDEIVEVR 228


>gi|89070133|ref|ZP_01157462.1| putative methyltransferase [Oceanicola granulosus HTCC2516]
 gi|89044250|gb|EAR50396.1| putative methyltransferase [Oceanicola granulosus HTCC2516]
          Length = 203

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 212 DLLELYCGNGN-FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L CG G   +  L     RV  V+ A   VEA    +      +  +  +   E  
Sbjct: 46  RVLDLGCGTGTPIARYLTERGARVTGVDGAASMVEAFAAALPDAEAVHADMRGLDLGETF 105

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            A+     F  L   D  +          PR+ L
Sbjct: 106 DAVLAWNSFFHLDAADQRAMFDVFARHCGPRAAL 139


>gi|148548978|ref|YP_001269080.1| type 11 methyltransferase [Pseudomonas putida F1]
 gi|148513036|gb|ABQ79896.1| Methyltransferase type 11 [Pseudomonas putida F1]
          Length = 254

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +   + E   A        +L+L CG G+ S  +A     V+A ++++  ++      A 
Sbjct: 36  LQAELAEQAHA-------RVLDLGCGAGHVSFHVAPLVAEVVAYDLSQSMLDVVASAAAE 88

Query: 254 NHVNNVKIVRMSSKEFTQA 272
             + N+   R +++    A
Sbjct: 89  RGLANITTERGAAERVPFA 107


>gi|313682267|ref|YP_004060005.1| methyltransferase type 11 [Sulfuricurvum kujiense DSM 16994]
 gi|313155127|gb|ADR33805.1| Methyltransferase type 11 [Sulfuricurvum kujiense DSM 16994]
          Length = 264

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 11/84 (13%)

Query: 206 TKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
              + GD  +L++ CG G  ++ LA+    V+A++ +   +E  +   A   V N+K   
Sbjct: 52  HMKLTGDEVVLDIGCGPGTLAVPLAKLVKEVIAIDFSAQMLEELKAYAAREGVTNIKTYH 111

Query: 264 MSSKEFTQAMRREREFNRLKDIDI 287
                    +  E +++ L  IDI
Sbjct: 112 ---------IGWEDDWSHLPPIDI 126


>gi|239944288|ref|ZP_04696225.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239990743|ref|ZP_04711407.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
 gi|291447756|ref|ZP_06587146.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291350703|gb|EFE77607.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 38/188 (20%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
            + R  A  L   +H  K         +      D  Y +       R  +      +F 
Sbjct: 21  PSPRFDAEELAAFVHGVKRGALHTVPDSD----FDARYWETVARREAREPLQHITGRAFF 76

Query: 189 -----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHF--D 232
                Q   G+         ++ W + A +    ++  +++L  G+G  +L +A+     
Sbjct: 77  RYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPVVVDLCTGSGAIALAMAQEVPRS 136

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +V AVE+++ ++   R N   + V   K   +S+               L ++D    + 
Sbjct: 137 KVHAVELSEDALRWTRKNAEGSRVTVHKGDALSA---------------LPELD---GQV 178

Query: 293 KTIFVDPP 300
             +  +PP
Sbjct: 179 DLVISNPP 186


>gi|308235423|ref|ZP_07666160.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Gardnerella vaginalis ATCC 14018]
          Length = 306

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 19/125 (15%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251
           +    L+W + A       +L+L  G+G   L +A      +V AVE +  + E  + N 
Sbjct: 109 VVQEGLDW-IRANNLKNPIVLDLCAGSGAIGLSVASEVADAQVWAVEKSPKAFEYLQKNY 167

Query: 252 -----AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                  N +N    +   +               L +      +   +  +PP      
Sbjct: 168 NKIAEKYNILNRYHAILGDATNV-----------NLPEKAAIKEKVDVVITNPPYVPESQ 216

Query: 307 ATVGM 311
               +
Sbjct: 217 PVEQI 221


>gi|302669919|ref|YP_003829879.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
 gi|302394392|gb|ADL33297.1| SAM-dependent methyltransferase [Butyrivibrio proteoclasticus B316]
          Length = 719

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +    +++EW+          +LE+  G G  + +LA+    V+A ++++     +  N 
Sbjct: 61  SEQRSNIVEWI---PMEKDAKVLEVGSGCGAITGMLAQKAGEVVACDLSR---RRSEINA 114

Query: 252 AANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             N   +NV I   + ++    + +  +F+ +  I +  Y    I  + P          
Sbjct: 115 TRNQDCDNVTIHIGNFRDVEPDLPK--DFDYIFLIGVFEYAQGYIGTENPYEKFLRMMNR 172

Query: 311 MVQAYPHIL 319
            ++    I+
Sbjct: 173 HLKKGGRIV 181


>gi|222150949|ref|YP_002560102.1| hypothetical protein MCCL_0699 [Macrococcus caseolyticus JCSC5402]
 gi|222120071|dbj|BAH17406.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 388

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 14/117 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN--HV 256
           +   L +      D+L L+  +G FS+ +  +  +   V+IAK S+E  + N A N  ++
Sbjct: 203 VRKKLLSMDTKHHDMLNLFAYSGGFSVAVGSNGYKTTNVDIAKRSIELMQQNFALNEMNL 262

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           ++   + M +            F+ L     H   F  I +DPP        V  V+
Sbjct: 263 DDQTFITMDA------------FDALAYFTRHLKTFDIIVIDPPSFSRHKKKVFTVK 307


>gi|188586892|ref|YP_001918437.1| Methyltransferase type 11 [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351579|gb|ACB85849.1| Methyltransferase type 11 [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 264

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
            +   +    I  D  YV   L +        Q E            + +E  +    G 
Sbjct: 1   MVTDTSKPENIWSDELYVKYYLEMMDEKYPESQTER---------EANFIEGAINLFYG- 50

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
              LL+L  G+G  ++ +A+   +V+ ++++   VEA++   + + V + V  ++   ++
Sbjct: 51  -DKLLDLCSGSGRHAISMAKRGYQVMGLDLSNGLVEASKRRASESSVKDQVDFIQGDVRK 109

Query: 269 FTQ 271
             +
Sbjct: 110 LHK 112


>gi|111018483|ref|YP_701455.1| HemK family methyltransferase [Rhodococcus jostii RHA1]
 gi|110818013|gb|ABG93297.1| probable methyltransferase, HemK family protein [Rhodococcus jostii
           RHA1]
          Length = 309

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 17/125 (13%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAA---TKGIQGDLLELYCGNGNFSLVLA--RHFDRVL 235
                 F          +L W LA           +L+L  G+G  +L +A  R    V 
Sbjct: 86  EVGPGVF--VPRPETELLLGWALAFLGSCDQHPPVVLDLCTGSGALALAIANARPDAVVH 143

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AVE+   ++  AR N  A        +R+   + T              +         I
Sbjct: 144 AVELEPHALAWARRNADAREQAGDAPIRLYQGDVTDRTL----------LAGLEGGVDLI 193

Query: 296 FVDPP 300
             +PP
Sbjct: 194 VANPP 198


>gi|121605682|ref|YP_983011.1| 3-demethylubiquinone-9 3-methyltransferase [Polaromonas
           naphthalenivorans CJ2]
 gi|120594651|gb|ABM38090.1| 3-demethylubiquinone-9 3-methyltransferase [Polaromonas
           naphthalenivorans CJ2]
          Length = 238

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 41/106 (38%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L+W+          +L++ CG G  +  +AR    VL +++A  +++ A+ + 
Sbjct: 33  HEINPLRLDWIDGLVSLNGLRVLDVGCGGGILADSMARKGAAVLGIDLASKALKVAQLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
                  V+   +S++          +     ++  H     ++  
Sbjct: 93  LEAQTQGVEYREVSAEALAAEQPGSFDVVTCMEMLEHVPDPASVVN 138


>gi|313212207|emb|CBY36220.1| unnamed protein product [Oikopleura dioica]
          Length = 827

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
           ++   +D +       G T      E ++   N+ +       +++         ++L C
Sbjct: 584 EVIAGKDSLQTTHKEHGNTFHLDMGE-TYW--NSRLQEE--HKIMSELIDENSVCVDLCC 638

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           G G F++ +A+   R +A ++   S++  R N   N
Sbjct: 639 GIGPFAIPIAKRGIRTIANDLNPDSIKWLRINAEIN 674


>gi|319763722|ref|YP_004127659.1| protein-l-isoaspartate o-methyltransferase [Alicycliphilus
           denitrificans BC]
 gi|330824015|ref|YP_004387318.1| protein-L-isoaspartate O-methyltransferase [Alicycliphilus
           denitrificans K601]
 gi|317118283|gb|ADV00772.1| protein-L-isoaspartate O-methyltransferase [Alicycliphilus
           denitrificans BC]
 gi|329309387|gb|AEB83802.1| protein-L-isoaspartate O-methyltransferase [Alicycliphilus
           denitrificans K601]
          Length = 257

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 192 AGINVHMLEWVLAATKGIQG---DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
             +   M E +L A     G    +LE+  G G  + VLAR    V  +E  +   E AR
Sbjct: 103 PSVVARMTELLLGAQCARAGGLGRVLEIGTGCGYQAAVLARLAREVYTIERLRALHEKAR 162

Query: 249 YNIAANHVNNVKIVRMS 265
            N+    + NV ++   
Sbjct: 163 ENLRPLRLANVHLILGD 179


>gi|227549967|ref|ZP_03980016.1| type 12 methyltransferase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227077983|gb|EEI15946.1| type 12 methyltransferase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 222

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q NA +   +            G  L+L  G G     LA+       VE++  +V+ AR
Sbjct: 36  QVNAALAAVV-------EPLGPGSALDLGSGEGGDVCWLAQRGWFATGVELSAVAVQRAR 88

Query: 249 YNIAANHV-NNVKIVRMS 265
               A    +    +   
Sbjct: 89  ELATATGCQDRAHFITGD 106


>gi|111025328|ref|YP_707748.1| methyltransferase [Rhodococcus jostii RHA1]
 gi|110824307|gb|ABG99590.1| methyltransferase [Rhodococcus jostii RHA1]
          Length = 260

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANH 255
            ++E +   T G    +L+L  G G  S+   +    RV AV++++ +      N    H
Sbjct: 62  ALVEALKQETLGSDSRVLDLCAGTGVLSVCAVKQGAGRVTAVDVSRRAFATTWINARL-H 120

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +V++VR    E                  + S RF  +  +PP
Sbjct: 121 RRSVRVVRGDLTE-----------------PVRSERFDLVVSNPP 148


>gi|20090221|ref|NP_616296.1| hypothetical protein MA1360 [Methanosarcina acetivorans C2A]
 gi|19915213|gb|AAM04776.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 26/61 (42%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               +L++  G G  ++ +++    V AVE ++  +   + NI    + N+  V    + 
Sbjct: 65  PDSRVLDIGAGPGTLAIPISQRVAHVTAVEPSEGMISVMQDNIKEYGIENIDPVHKDWES 124

Query: 269 F 269
            
Sbjct: 125 V 125


>gi|148262707|ref|YP_001229413.1| methyltransferase type 11 [Geobacter uraniireducens Rf4]
 gi|146396207|gb|ABQ24840.1| Methyltransferase type 11 [Geobacter uraniireducens Rf4]
          Length = 268

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVL--AVEIAKPSVEAARYN 250
               ++E + + T    G  +LE  CG G  ++ LAR+    L  +V+I++ SV  AR N
Sbjct: 20  QASTLVELLHSDTVYPAGSKVLEAGCGVGAQTVTLARNSPEALITSVDISENSVVTARLN 79

Query: 251 IAANHVNNVKIVRMS 265
             A  + NV   +  
Sbjct: 80  TEAAGITNVMFQQGD 94


>gi|241764513|ref|ZP_04762533.1| ubiquinone biosynthesis O-methyltransferase [Acidovorax delafieldii
           2AN]
 gi|241366049|gb|EER60653.1| ubiquinone biosynthesis O-methyltransferase [Acidovorax delafieldii
           2AN]
          Length = 236

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 41/110 (37%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L+W+ +        +L++ CG G  S  +AR    V+ ++++  ++  A  + 
Sbjct: 33  HQINPLRLDWINSLAGLPGKRVLDVGCGGGILSDSMARKGAHVMGIDLSTKALRVASLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
                 N++   +S +          +     ++  H     ++     R
Sbjct: 93  LETETPNLQFREVSVEALADEQAASFDVVTCMEMLEHVPDPTSVVRACAR 142


>gi|223954224|gb|ACN29714.1| carboxylate O-methyltransferase [Nonomuraea longicatena]
          Length = 285

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 9/82 (10%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPS 243
           F +P   +   ++E +          +L++ CG G  +  LA       RV  ++++   
Sbjct: 28  FFRP---VAERLVELL---GIEKGQQILDVGCGRGAVTFPLAEAVGPTGRVFGIDLSAGM 81

Query: 244 VEAARYNIAANHVNNVKIVRMS 265
           VEA R ++AA  V N+++  M 
Sbjct: 82  VEALRASVAAAGVPNIEVRHMD 103


>gi|229515824|ref|ZP_04405282.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           TMA 21]
 gi|229347087|gb|EEO12048.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           TMA 21]
          Length = 199

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+           L+L+ G+G      A R  ++V  +E+   + +  + N+ 
Sbjct: 46  VKETLFNWLAQEVPN--ARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQ 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 104 SLEAENIELIHTDALAFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 148

Query: 312 VQ-----AYPHILYISC 323
           ++     A   ++YI C
Sbjct: 149 LEQNGWLAPQAMIYIEC 165


>gi|172040464|ref|YP_001800178.1| putative DNA methylase [Corynebacterium urealyticum DSM 7109]
 gi|171851768|emb|CAQ04744.1| putative DNA methylase [Corynebacterium urealyticum DSM 7109]
          Length = 187

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 203 LAATKGIQGDL-LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L A  G+ G++ L+LY G+G   L   +R    V  VE    +V   +  IA     N  
Sbjct: 36  LEARFGLTGEVVLDLYAGSGALGLEAASRGAAEVTLVEALDGAVSTIKGTIATVGHPNTH 95

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +V   +  F     R+               +  +  DPP    DDA   M+ A
Sbjct: 96  VVHAKAMTFLATAPRQ--------------HYTMVLADPPYELADDAVADMLAA 135


>gi|150395252|ref|YP_001325719.1| hypothetical protein Smed_0024 [Sinorhizobium medicae WSM419]
 gi|150026767|gb|ABR58884.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 385

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 21/150 (14%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYC 218
            D + E   +      +     SF           H   M + V  A + ++  +L L+ 
Sbjct: 160 GDVLGETWPMQLLDTDFLGRFTSFRHVGVFPEQLAHWSWMRDQVAGAGRPLK--VLNLFG 217

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRE 276
             G  SL+ A+    V  V+ +K ++  AR N A        ++ +   + +F Q   R 
Sbjct: 218 YTGVASLIAAKAGAEVTHVDASKKAIGWARENQAMARAEKLPIRWICDDAMKFIQREER- 276

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                         R+  I  DPP+ G   
Sbjct: 277 -----------RGSRYDVILTDPPKFGRGP 295


>gi|20091862|ref|NP_617937.1| hypothetical protein MA3044 [Methanosarcina acetivorans C2A]
 gi|19917054|gb|AAM06417.1| predicted protein [Methanosarcina acetivorans C2A]
          Length = 295

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 190 PNAGINVHMLEWVLAAT--KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            N       +   L           +LE+  G G F +  AR  D V AVE A+  +   
Sbjct: 54  TNQYEFGESVYAALDLHGVIPPHARVLEVGSGPGTFVIPFARRVDHVTAVEPAEGMIRMI 113

Query: 248 RYNIAANHVNNVKIV 262
           R N     VNN  I+
Sbjct: 114 RQNATEAGVNNYSII 128


>gi|88597228|ref|ZP_01100463.1| conserved domain protein [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190289|gb|EAQ94263.1| conserved domain protein [Campylobacter jejuni subsp. jejuni 84-25]
          Length = 239

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 37  QDKSIIDIGCGTGVWTLHLAKEAKEILALDSANAMLEILQEDAKKLNLNNIKCKNLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|86149598|ref|ZP_01067828.1| conserved domain protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|218561924|ref|YP_002343703.1| putative SAM-dependent methyltransferase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|85839866|gb|EAQ57125.1| conserved domain protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112359630|emb|CAL34415.1| putative SAM-dependent methyltransferase [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|315927181|gb|EFV06531.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315928588|gb|EFV07883.1| flagellar basal-body rod protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 239

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 37  QDKSIIDIGCGTGVWTLHLAKEAKEILALDSANAMLEILQEDAKKLNLNNIKCKNLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|288942500|ref|YP_003444740.1| methyltransferase small [Allochromatium vinosum DSM 180]
 gi|288897872|gb|ADC63708.1| methyltransferase small [Allochromatium vinosum DSM 180]
          Length = 196

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF- 231
           + GRTL +R     F+     I+      +         D L+L CG G   L LA    
Sbjct: 20  LGGRTLEFRSTWGLFSP--REIDEGTRLLLDHLHIEPGDDCLDLGCGYGPIGLTLAALAP 77

Query: 232 -DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             R L V+    +V+ A  N   N ++N +
Sbjct: 78  LGRTLLVDKDFVAVDYANRNARLNRLDNAE 107


>gi|226360606|ref|YP_002778384.1| protein methyltransferase HemK [Rhodococcus opacus B4]
 gi|226239091|dbj|BAH49439.1| protein methyltransferase HemK [Rhodococcus opacus B4]
          Length = 309

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 17/125 (13%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAA---TKGIQGDLLELYCGNGNFSLVLA--RHFDRVL 235
                 F          +L W LA           +L+L  G+G  +L +A  R    V 
Sbjct: 86  EVGPGVF--VPRPETELLLGWALAFLGSCDQHPPVVLDLCTGSGALALAIANARPDAVVH 143

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           AVE+   ++  AR N  A        +R+   + T              +         I
Sbjct: 144 AVELEPHALAWARRNADAREQAGDAPIRLYQGDVTDRTL----------LAGLEGGVDLI 193

Query: 296 FVDPP 300
             +PP
Sbjct: 194 VANPP 198


>gi|163854794|ref|YP_001629092.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           petrii DSM 12804]
 gi|163258522|emb|CAP40821.1| putative protein-L-isoaspartate O-methyltransferase [Bordetella
           petrii]
          Length = 226

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 189 QPNA-GINVHMLE------WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q NA      ML                   +LE+  G+G  + +LA    +V +VEI  
Sbjct: 61  QINAVDTRQVMLAPKVEARLAQELQLTPTDCVLEIGTGSGYQAALLAHLAQQVTSVEIDN 120

Query: 242 PSVEAARYNIAANHVNNVKIVRMS 265
             V  A+ N+  N+V NVK+    
Sbjct: 121 RLVAFAQQNLQMNNVTNVKVETGD 144


>gi|254362306|ref|ZP_04978418.1| protein-glutamine N-methyltransferase [Mannheimia haemolytica
           PHL213]
 gi|153093886|gb|EDN74814.1| protein-glutamine N-methyltransferase [Mannheimia haemolytica
           PHL213]
          Length = 288

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 49/225 (21%)

Query: 87  MIEMMATIRLEPLLRAKL---FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
             +++     +P L AK      +  +T +S  AI       L +    E A +L     
Sbjct: 11  EQKLLENSGADPYLNAKFDANLLLQAVTKRSKSAIFAFSETLLSESELAELAEKLARRAK 70

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL 203
                           I   R++    L V+  TLI R                ++E  L
Sbjct: 71  GEPMAY----------ILGYREFWSLPLKVSPATLIPRPD-----------TERLVELAL 109

Query: 204 AATKGIQGD-----LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANH 255
                  G+     +L+L  G G  +L LA        ++ V+    +V+ A  N     
Sbjct: 110 EYANKRLGNQKMLQILDLGTGTGAIALALASELGEKAQIIGVDFQNEAVQLAEENRRNLG 169

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +N V  ++               F+ L +      +F  I  +PP
Sbjct: 170 LNQVTFLQSD------------WFSSLANQ-----QFDLIVSNPP 197


>gi|78066329|ref|YP_369098.1| hypothetical protein Bcep18194_A4859 [Burkholderia sp. 383]
 gi|77967074|gb|ABB08454.1| hypothetical protein Bcep18194_A4859 [Burkholderia sp. 383]
          Length = 254

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L    G  G++L+  CG G  +L LAR    +   +++K ++E A    AA  + 
Sbjct: 37  LLLPPGETGEVLDCACGIGTQALGLARAGYDIEGTDLSKLAIERASREAAARGLR 91


>gi|326389862|ref|ZP_08211426.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325994130|gb|EGD52558.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 308

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 37/223 (16%)

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
           YF   S  I+ + I +   I         +   D   S+ D+A             W++ 
Sbjct: 66  YFPIASDTIDRINI-LKDRIVELKSFGIDIGNFDLKVSEVDEADWA--------SNWKQY 116

Query: 135 AIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
              L+                 K  I   +   +E ++     +I      +F       
Sbjct: 117 YKPLK--------------IGKKIVI---KPSWEEYVSQGEEIIIELDPGMAFG-TGTHE 158

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L      +  + ++ CG+G  S+  ++     V A +I + SVE AR N+  
Sbjct: 159 TTKMCLEFLEEIVIPERIVFDVGCGSGILSIASSKLGAKEVYAADIDEVSVEVARQNVEL 218

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           N++ NVK+ +              EF    DI + +     I 
Sbjct: 219 NNLQNVKVFKSDL---------LGEFRGKADIIVANIIADVII 252


>gi|312875748|ref|ZP_07735743.1| methyltransferase small domain protein [Lactobacillus iners LEAF
           2053A-b]
 gi|311088740|gb|EFQ47189.1| methyltransferase small domain protein [Lactobacillus iners LEAF
           2053A-b]
          Length = 204

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I G++L++  G G   L  A+     RV  +++ + ++  A+ N   N ++NV I    
Sbjct: 60  EISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFCSD 119

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                        +  L D +    +F  I  +PP          ++Q    
Sbjct: 120 C------------YRNLDDQE----QFGLILTNPPIRAGKQVVDDILQNAKK 155


>gi|307262577|ref|ZP_07544208.1| hypothetical protein appser13_70 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306872075|gb|EFN03788.1| hypothetical protein appser13_70 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 290

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 36/159 (22%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLL 214
           I  ++D+    L V+  TLI R                ++E  L              +L
Sbjct: 77  ILGEKDFWSLPLKVSPHTLIPRPD-----------TERLVEVALDWVYKRLESQQTLQIL 125

Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L  G G  +L LA       +++ V+    +V  A  N       NV+ ++        
Sbjct: 126 DLGTGTGAIALALASELGDKAQIIGVDFKPEAVTLAETNRQNLGFENVRFLQSD------ 179

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                          + + +F  I  +PP     D  + 
Sbjct: 180 -----------WFSALENRQFDLIVSNPPYIDKQDENLQ 207


>gi|255554887|ref|XP_002518481.1| signal transducer, putative [Ricinus communis]
 gi|223542326|gb|EEF43868.1| signal transducer, putative [Ricinus communis]
          Length = 1050

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/191 (19%), Positives = 74/191 (38%), Gaps = 21/191 (10%)

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW----RECAIRLRD 140
            LM E +A++     L  +L +      +    IV L      D +W     E    +  
Sbjct: 735 QLMKEAVASLIKHKGLSTELLEQLPTRWERLGNIVVLPVTSFKDPSWDLIGEELWPAIAR 794

Query: 141 ALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
           +L++++           T+      +  D  +VD R    G    +   +  F+      
Sbjct: 795 SLNSQRLARNGRVAPTGTRDSTLEMLVGDNGWVDHR--ENGILYSFDVTKCMFS------ 846

Query: 195 NVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNI 251
             ++ E +  A    + +++ +L+ G G F L   +  +   V A E    +VEA + N+
Sbjct: 847 WGNLSEKIRMAHLDCKDEVIVDLFAGIGYFVLPFLVRANAKLVYACEWNPHAVEALKRNL 906

Query: 252 AANHVNNVKIV 262
            AN V++  +V
Sbjct: 907 EANSVSDQCVV 917


>gi|220673234|emb|CAX12680.1| novel protein similar to vertebrate trimethylguanosine synthase
           homolog (S. cerevisiae) (TGS1) [Danio rerio]
          Length = 180

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+ ++I    +  A++N A   V   +  ++    +   
Sbjct: 27  IIDAFCGVGGNAIQFALTGKRVIGIDIDPVRLALAQHNAAVYGVEQRIDFLQGDFLQLAP 86

Query: 272 AMRREREF---NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            +R +  F          + +  F    +  P          M+    +I+Y
Sbjct: 87  HLRGDMVFLSPPWGGPEYLTADVFNIQTMMTPDGFEIFRLSKMIS--DNIVY 136


>gi|254444222|ref|ZP_05057698.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
 gi|198258530|gb|EDY82838.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
          Length = 311

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +++L  G G  S +LAR  + V  V+ +   VE        N ++N++ +    ++
Sbjct: 149 RIVDLGAGEGLISQLLARRAEHVYCVDSSTRMVEVGTELAKTNKLDNLEYILGDIEK 205


>gi|183602494|ref|ZP_02963859.1| possible methylase protein [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219683537|ref|YP_002469920.1| methylase protein [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190568|ref|YP_002967962.1| methylase of polypeptide chain release factor [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241195974|ref|YP_002969529.1| methylase of polypeptide chain release factor [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218135|gb|EDT88781.1| possible methylase protein [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219621187|gb|ACL29344.1| possible methylase protein [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248960|gb|ACS45900.1| Methylase of polypeptide chain release factor [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250528|gb|ACS47467.1| Methylase of polypeptide chain release factor [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793555|gb|ADG33090.1| Methylase of polypeptide chain release factor [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 304

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 18/179 (10%)

Query: 80  SLLINALMIEMMATIRLEPLLRAKLFQIDYLT---SQSDQAIVTLIYHRLLDDAWRECAI 136
             LI+     +       P    KL   D L    S  + A +     R L   +     
Sbjct: 4   DQLIHRCAEYLREAGVDTPEHDVKLIMADVLGCSPSDVESAAIMRTDVRALCAKYGRDDD 63

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT--QPNAGI 194
              + +H  K+ +         +  +             R L  +     F   Q    I
Sbjct: 64  A--ELVHTFKHMVCRRHAREPLQYIVGH--------APFRYLDLKVGPGVFIPRQETELI 113

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
               +EWV          +++L  G+G   L LA      +V  VE++  +    R NI
Sbjct: 114 AQDAIEWVTRHGI-YSPRIVDLCAGSGALGLALATEIPGAQVWGVELSPQAAVWTRRNI 171


>gi|260905036|ref|ZP_05913358.1| Methyltransferase type 12 [Brevibacterium linens BL2]
          Length = 236

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 40/122 (32%), Gaps = 2/122 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V +      G +L++ CG G   + LA H      +++++ +V+ A    AA  V     
Sbjct: 39  VASVGSLTPGRVLDVGCGEGADVIWLAEHGWEATGIDLSQTAVDRATEAAAAKGVT-ASF 97

Query: 262 VRMSSKEFTQAMRREREFN-RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                  +  A         R    D+    F    +   R  L       V     +L 
Sbjct: 98  EVADVSTWDPAGSESDAGELRRGGYDLVIGCFLHTRLPDTREELVGRVSEHVAPNGRLLL 157

Query: 321 IS 322
           IS
Sbjct: 158 IS 159


>gi|86607113|ref|YP_475876.1| ribosomal protein L11 methyltransferase [Synechococcus sp.
           JA-3-3Ab]
 gi|86555655|gb|ABD00613.1| ribosomal protein L11 methyltransferase [Synechococcus sp.
           JA-3-3Ab]
          Length = 261

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 22/181 (12%)

Query: 114 SDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTV 173
           + Q I  L + R+  + W     +            Q     +K  IC    ++D     
Sbjct: 41  AGQPIPKLRWERIEAEDWSNSWKQH----------WQPEPVGDKLLICPA--WLDP--PP 86

Query: 174 AGRTLIYRQIEN-SF---TQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA 228
               L+ R     +F   T P   + +  LE  +    G +G  + ++ CG+G  S+  A
Sbjct: 87  HPGRLLLRLDPGMAFGTGTHPTTQLCLEALE--MRLGAGTEGVTVADVGCGSGILSVAAA 144

Query: 229 R-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                RV AV+I   +V+A  +N   N + +  +V   S E    M      N L D+ +
Sbjct: 145 LLGAKRVFAVDIDPLAVQATLHNRDLNGLTDRIVVAQGSLEHIPEMVDGLVCNILTDVIL 204

Query: 288 H 288
            
Sbjct: 205 D 205


>gi|113476020|ref|YP_722081.1| type 11 methyltransferase [Trichodesmium erythraeum IMS101]
 gi|110167068|gb|ABG51608.1| Methyltransferase type 11 [Trichodesmium erythraeum IMS101]
          Length = 439

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
           N  ++E            +L+  CG+G  SLVLA      +++ ++I++ SVE AR  + 
Sbjct: 50  NQKVIET-------KGKMILDAACGSGYKSLVLAEANPGAKIVGIDISEKSVELARQRLQ 102

Query: 253 ANHVNNVKIVRMSSKEF 269
            +  +N +   +S +E 
Sbjct: 103 YHGFDNAEFHVLSIEEL 119


>gi|332879387|ref|ZP_08447084.1| ribosomal protein L11 methyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332682807|gb|EGJ55707.1| ribosomal protein L11 methyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LE +L    G +  +L+  CG G   +    +    V A +I + SV+  + N+  N V 
Sbjct: 135 LERLLGMDLGHK-TVLDAGCGTGVLGIFCTLKGAKSVWAYDIDRWSVDNTKENMLLNGVK 193

Query: 258 NVKIVRMSS 266
           N+++V  ++
Sbjct: 194 NMEVVEGNA 202


>gi|327438261|dbj|BAK14626.1| 16S RNA G1207 methylase RsmC [Solibacillus silvestris StLB046]
          Length = 200

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 19/107 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               I G LL++ CG G   L +A++     +  ++I   +V  ++ N   N V NV+I 
Sbjct: 54  EMPKIDGVLLDVGCGYGPIGLSIAKNNPDREIYMMDINSRAVSLSQKNAQLNGVQNVRIF 113

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDAT 308
                   +                   +   +  +PP R+G +   
Sbjct: 114 ESDGLAAVE----------------PGTKVAAVLTNPPIRAGKETIF 144


>gi|312881127|ref|ZP_07740927.1| Methyltransferase type 11 [Aminomonas paucivorans DSM 12260]
 gi|310784418|gb|EFQ24816.1| Methyltransferase type 11 [Aminomonas paucivorans DSM 12260]
          Length = 281

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 16/110 (14%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
            +  +Y  E L              SF   N          + AA       +L+L CG 
Sbjct: 50  IIGGNYTREVLQNVPEG----VQATSFGCGNP---------IEAAGIRPGETVLDLGCGA 96

Query: 221 GNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G  + + A       +V  +++ +  +E AR N  A  + NV+ +R   +
Sbjct: 97  GLDAFLAAGETGPTGKVYGLDMTEEMLETARRNREAWGLENVEFLRGEME 146


>gi|295836312|ref|ZP_06823245.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB74]
 gi|295825954|gb|EFG64569.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB74]
          Length = 195

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 201 WVLAATKGIQGD-LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           W       + G+ +L+LY G+G   L  L+R     L VE    +V   R N+    +  
Sbjct: 37  WEALLGGPLDGERVLDLYGGSGAVGLEALSRGAAHALLVESDARAVRTIRANVRDLGLPG 96

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            ++ +  + +       E  +               +F+DPP +  D     ++
Sbjct: 97  AEVRQGKAAQIVAGPPPEAPY-------------DLVFLDPPYAVPDAELGEIL 137


>gi|254777576|ref|ZP_05219092.1| methyltransferase type 12 [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 209

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           W++      +GD+L++ CG+G  +  LA     V+ ++    SV  A   +    V+N  
Sbjct: 20  WLVGIAARHRGDVLDVGCGDGLLAARLAPVSRSVVGIDADPASVRRAARRLER--VDNAC 77

Query: 261 IVRMSSKEF 269
           + +   ++F
Sbjct: 78  VQQARFQDF 86


>gi|170691943|ref|ZP_02883107.1| Methyltransferase type 11 [Burkholderia graminis C4D1M]
 gi|170143227|gb|EDT11391.1| Methyltransferase type 11 [Burkholderia graminis C4D1M]
          Length = 250

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           P       +     A        +L++ CG G+ S  +A H   V+A +IA P +     
Sbjct: 22  PTHATGADLRTLAEAVAATPGATVLDMGCGAGHASFAVAPHAQEVVAYDIAAPMLAIVES 81

Query: 250 NIAANHVNNVKIVRMSSKEF 269
                 + N++  + ++++ 
Sbjct: 82  AAKERGLANIRTQQGAAEKL 101


>gi|118618491|ref|YP_906823.1| methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118570601|gb|ABL05352.1| methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 184

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 2/111 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                     G  L+L CG G  ++ LAR    VL ++I+  ++  AR     + V+   
Sbjct: 34  QAHLKLVPAAGRALDLGCGQGLGAVWLARRGLDVLGLDISPVAIAQARDLAERSGVS--A 91

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             R    +    +      + +   +    R     ++    G   A V +
Sbjct: 92  RCRFDVVDLDDGLPDGPPVDLIVCHNFRDRRLDAAIIERLAPGGLVALVAL 142


>gi|315127041|ref|YP_004069044.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Pseudoalteromonas sp. SM9913]
 gi|315015555|gb|ADT68893.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Pseudoalteromonas sp. SM9913]
          Length = 279

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 65/203 (32%), Gaps = 32/203 (15%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI--QLIGRANKTK 159
             L           Q ++  I  +     +     +L D       +   + +     + 
Sbjct: 14  NLLASSSDSAKLDAQVLLLNILQKPRSYLFTWPEKQLTDEQSQAFERACERRLNGEPVSH 73

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I   R++   +L V   TLI R                ++E  L+        +L+L  G
Sbjct: 74  ITGYREFWSLQLEVNPTTLIPRPD-----------TETLVELALSCNVPNDAKVLDLGTG 122

Query: 220 NGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L L        ++AV+    +V  A+ N     +NNV + + +            
Sbjct: 123 TGAIALALGSEMPTWDIIAVDRIDDAVALAKRNQKRLAINNVCVEQSN------------ 170

Query: 278 EFNRLKDIDIHSYRFKTIFVDPP 300
                    +++ +F  I  +PP
Sbjct: 171 -----WFSALNNKKFDLIVTNPP 188


>gi|295694828|ref|YP_003588066.1| methyltransferase small [Bacillus tusciae DSM 2912]
 gi|295410430|gb|ADG04922.1| methyltransferase small [Bacillus tusciae DSM 2912]
          Length = 210

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 20/121 (16%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + +     +G +L+L CG G   +  A      +V   +I + +VE A+ N     +  V
Sbjct: 50  IESMDVPKRGRVLDLGCGYGPIGIAAALLEPGVQVTMADINERAVELAKENARRLRLQRV 109

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
           ++                         +   RF  ++ +PP R+G +     + +A  H+
Sbjct: 110 EVYVSD-----------------GFAGLGDRRFDRVYCNPPIRAGKEQVYRLLSEAAGHL 152

Query: 319 L 319
            
Sbjct: 153 A 153


>gi|289178306|gb|ADC85552.1| Peptide release factor-glutamine N5-methyltransferase
           [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 319

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 54/179 (30%), Gaps = 18/179 (10%)

Query: 80  SLLINALMIEMMATIRLEPLLRAKLFQIDYLT---SQSDQAIVTLIYHRLLDDAWRECAI 136
             LI+     +       P    KL   D L    S  + A +     R L   +     
Sbjct: 19  DQLIHRCAEYLREAGVDTPEHDVKLIMADVLGCSPSDVESAAIMRTDVRALCAKYGRDDD 78

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT--QPNAGI 194
              + +H  K+ +         +  +             R L  +     F   Q    I
Sbjct: 79  A--ELVHTFKHMVCRRHAREPLQYIVGH--------APFRYLDLKVGPGVFIPRQETELI 128

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
               +EWV          +++L  G+G   L LA      +V  VE++  +    R NI
Sbjct: 129 AQDAIEWVTRHGI-YSPRIVDLCAGSGALGLALATEIPGAQVWGVELSPQAAVWTRRNI 186


>gi|242010423|ref|XP_002425967.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212509958|gb|EEB13229.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 232

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 213 LLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +++L+ G G F+L   +      V A E    +VEA R N+  N +
Sbjct: 136 VIDLFAGIGYFTLPYIVHAKAKFVYACEWNPVAVEALRRNLELNKI 181


>gi|169344693|ref|ZP_02865656.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
 gi|169297160|gb|EDS79274.1| conserved hypothetical protein [Clostridium perfringens C str.
           JGS1495]
          Length = 256

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 57/160 (35%), Gaps = 33/160 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           A    +  +L+L  G G    ++   ++    + +EI +   E A  +   N++ + V  
Sbjct: 49  ANVNRKHSVLDLCTGTGIIPFIIYGKKNPKEAVGIEIQEEFAEMANRSAKINNIEDKVSF 108

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPH 317
           V    K+              K++     +F  + V+PP    +   V     +  A   
Sbjct: 109 VCGDLKD--------------KELSKSMPKFDVVTVNPPYKLNNAGIVNPEDKLAIARHE 154

Query: 318 ILYISCN-----PDS--LCRDLSILSTTHTIERLALFDQF 350
           I+   CN       S    +D   L   H  ERLA  D F
Sbjct: 155 IM---CNLEDVIAASRRFLKDNGRLYMVHRPERLA--DIF 189


>gi|50955207|ref|YP_062495.1| hypothetical protein Lxx15950 [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951689|gb|AAT89390.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 203

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 24/127 (18%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              +L+ V        G  L+L CG G  +L LA       V AV++   +++  R N  
Sbjct: 48  TRVLLDHV--PPAPPSGQFLDLGCGWGPLALTLALESPHATVWAVDVNTRALDVVRRNAE 105

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
              + NV  V                     D       F TI+ +PP R G ++    +
Sbjct: 106 KLGLKNVNPVT-------------------PDRVPDGLEFTTIWSNPPIRVGKNELHTIL 146

Query: 312 VQAYPHI 318
            +  P +
Sbjct: 147 KRWLPRL 153


>gi|70729807|ref|YP_259546.1| hypothetical protein PFL_2439 [Pseudomonas fluorescens Pf-5]
 gi|68344106|gb|AAY91712.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 313

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 89/250 (35%), Gaps = 35/250 (14%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQ--------IDYLTSQSDQAIVTLIYHRLLDDAWR 132
           L +  L   ++  +   P    +LF         ++ LT    Q +V +   +  +    
Sbjct: 4   LALATLNQHLLTALAAAPGETRRLFHGRGRCWPGLEQLTVDWLQGVVLVSLFKEPEAGQL 63

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL--------TVAGRTLIYRQIE 184
           E   +L   L +    +    R+   +     D   E L        T+    L Y+   
Sbjct: 64  EALQQLLADLGSTPQWVASGARSLMLQHRYLPDSRGEWLLGEAIDSCTITEEGLRYQVDL 123

Query: 185 NSFTQPNAGINVHMLE---WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIA 240
            S  Q N G+ + M     WV A  +G   ++L L+     FS+  +A   +RV+ ++++
Sbjct: 124 GS-KQNN-GLFLDMRYGRNWVRANARG--KNVLNLFAYTCGFSVAAIAGGAERVVNLDMS 179

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + ++   R N   N  ++   V     +  ++  + +              +  + +DPP
Sbjct: 180 RAALSRGRDNHRLNG-HDTSRVSFLGHDLFKSWSKVK----------QGGPYDLVIIDPP 228

Query: 301 RSGLDDATVG 310
                   +G
Sbjct: 229 SFQKGSFVLG 238


>gi|330508716|ref|YP_004385144.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328929524|gb|AEB69326.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 263

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           EN FT+ N    V+ L   LA   G  G +L++ CG G  S+ LAR    V  ++++   
Sbjct: 20  ENVFTK-NTIQEVNFLTEELAVRDG--GSILDVGCGTGRHSIELARRGYAVTGLDLSAEM 76

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEF-------TQAMRREREFNRLKDIDIHSYRFKTIF 296
           +  A    A +   NV+ +R  +  F             E  F  L   D    +  +I 
Sbjct: 77  LARAAD-AARSKKVNVQWIRSDAARFQLPNSYDGAICLCEGAFGLLGKGDDPIGQPLSIL 135

Query: 297 VDPPRS 302
            +  RS
Sbjct: 136 CNISRS 141


>gi|312962058|ref|ZP_07776555.1| UbiE/COQ5 methyltransferase [Pseudomonas fluorescens WH6]
 gi|311283868|gb|EFQ62452.1| UbiE/COQ5 methyltransferase [Pseudomonas fluorescens WH6]
          Length = 254

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            +A      L     A +G    LL+L CG G+ S  +A     V+A ++++  ++    
Sbjct: 26  VHAQGTEFALLQAELAGQG-SARLLDLGCGAGHVSFHVAPLVKEVVAYDLSQQMLDVVAA 84

Query: 250 NIAANHVNNVKIVRMSSKEFTQA 272
                   N+  V  +++    A
Sbjct: 85  AAQERGFTNISTVNGAAERLPFA 107


>gi|262043700|ref|ZP_06016809.1| methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|224493315|sp|A6T766|RLMI_KLEP7 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|259039038|gb|EEW40200.1| methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 400

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L     +V +V+ ++ +++ AR N+  N ++  
Sbjct: 216 RLATRRYVADKRVLNCFSYTGGFAVSALMGGCRQVTSVDTSQEALDVARQNVEINGLD-- 273

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
               +S  EF     R+  F  L+       +F  I +DPP+   +    +G  + Y  I
Sbjct: 274 ----LSKAEFV----RDDVFKLLRKYRDQGEKFDVIVMDPPKFVENKSQLMGACRGYKDI 325


>gi|299883399|ref|YP_003738952.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|300712415|ref|YP_003738228.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|299126099|gb|ADJ16437.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|299126825|gb|ADJ17161.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
          Length = 219

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 46/163 (28%), Gaps = 35/163 (21%)

Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYN 250
              + E  + +     G+ +LEL CG GN    L         V+ V+ +   VE A   
Sbjct: 31  ETELRERAVKSLALDSGERVLELGCGLGNSFEALRTRVGSQGAVVGVDYSHGMVERAAER 90

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +      NV +V   S                       Y   T+   P  +   D    
Sbjct: 91  VRQAGWRNVHLVHGDSGRLGAD----------DGAFDAVYAAMTLSAMPNPADAVDTAYR 140

Query: 311 MVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYT 353
            ++    I+                     +     F +FP+T
Sbjct: 141 ALRPGGRIV---------------------VLDAQPFQEFPWT 162


>gi|224002032|ref|XP_002290688.1| hypothetical protein THAPSDRAFT_262512 [Thalassiosira pseudonana
           CCMP1335]
 gi|220974110|gb|EED92440.1| hypothetical protein THAPSDRAFT_262512 [Thalassiosira pseudonana
           CCMP1335]
          Length = 203

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 23/117 (19%)

Query: 211 GDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             +L++Y G G ++L   +      V A E    ++ A RYN+ AN V+           
Sbjct: 39  DRVLDMYAGIGYYTLPALIHGKARHVTACEWNPNAIYALRYNLKANGVD-------DKVT 91

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIF--VDPPRSGLDDATVGMVQAYPHILYISC 323
             +   R      L+   +  Y +  I   + P   G              ++ +SC
Sbjct: 92  VLEGDCRVSLKEHLQPTSMEDYGYDRISLGLLPSSEG------------GWVVAVSC 136


>gi|190151398|ref|YP_001969923.1| HemK-like protein [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|189916529|gb|ACE62781.1| HemK-like protein [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
          Length = 314

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 36/159 (22%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-----QGDLL 214
           I  ++D+    L V+  TLI R                ++E  L              +L
Sbjct: 101 ILGEKDFWSLPLKVSPHTLIPRPD-----------TERLVEVALDWVYKRLESQQTLQIL 149

Query: 215 ELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L  G G  +L LA       +++ V+    +V  A  N       NV+ ++        
Sbjct: 150 DLGTGTGAIALALASELGDKAQIIGVDFKPEAVTLAETNRQNLGFENVRFLQSD------ 203

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                          + + +F  I  +PP     D  + 
Sbjct: 204 -----------WFSALENRQFDLIVSNPPYIDKQDENLQ 231


>gi|77458118|ref|YP_347623.1| UbiE/COQ5 methyltransferase [Pseudomonas fluorescens Pf0-1]
 gi|77382121|gb|ABA73634.1| putative methyltransferase [Pseudomonas fluorescens Pf0-1]
          Length = 255

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            +A      L     A +G +  +L+L CG G+ S  +A     V+A ++++  ++    
Sbjct: 27  VHAQGTEFALLQAELAGQG-EARVLDLGCGAGHVSFHVASLVKEVVAYDLSQQMLDVVAA 85

Query: 250 NIAANHVNNVKIVRMSSKEFTQA 272
                 ++NV  V  +++    A
Sbjct: 86  AAVDRGLSNVSTVNGAAERLPFA 108


>gi|58617148|ref|YP_196347.1| 3-demethylubiquinone-9 3-methyltransferase [Ehrlichia ruminantium
           str. Gardel]
 gi|58416760|emb|CAI27873.1| 3-demethylubiquinone-9 3-methyltransferase [Ehrlichia ruminantium
           str. Gardel]
          Length = 241

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  V+         +L++ CG G  S  +AR   RV  ++ +K ++  A+ +   + +
Sbjct: 43  NYINKVMPNVDFKSLSVLDVGCGGGLLSESMARLNMRVCGIDASKETINVAQKHALVHGI 102

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           +N+    M+ ++    ++ + +   + +I  H                    +  +    
Sbjct: 103 HNISYHCMNIEDLVN-IQEKYDIITVMEIVEHVDNLPLFINS----------ISSLLNDN 151

Query: 317 HILYISCNPDSLCRDLSILSTT 338
            I+++S    +L R++  L   
Sbjct: 152 GIIFLS----TLNRNIKSLLCG 169


>gi|27151572|sp|Q8PU18|RSMA_METMA RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
          Length = 271

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 179 IYRQIENSFTQPNAGINVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
            Y     +F Q +  I+   L+  V AA    Q  +LE+  G GN +  LAR   +V+AV
Sbjct: 8   KYNIKGGTFDQ-HFLIDAGYLDRIVAAAELSPQDTVLEIGAGIGNLTERLARRAKKVIAV 66

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           E+    V         +   N++I+   + + 
Sbjct: 67  ELDPALVSVLHD--RFDAAENIEIIAGDALKV 96


>gi|329850766|ref|ZP_08265611.1| SAM dependent methyltransferase [Asticcacaulis biprosthecum C19]
 gi|328841081|gb|EGF90652.1| SAM dependent methyltransferase [Asticcacaulis biprosthecum C19]
          Length = 308

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 23/155 (14%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           +F         +   W   A     G  +L L+   G  SLV A    +V  V+ +K ++
Sbjct: 102 AFF---PEQAANW-AWQKQAIAARPGIRVLNLFGYTGVASLVAASAGAKVTHVDASKKAI 157

Query: 245 EAARYNIAANHVNNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
             AR N A + +     + +   ++++ Q     RE  R         +++ I +DPP+ 
Sbjct: 158 GWARDNAALSGLAEAPIRWICEDARKYVQ-----REVKR-------GSKYEGIILDPPKY 205

Query: 303 GLDD--ATVGMVQAYPHILYISCNPDSLCRDLSIL 335
           G         + +  P ++ +      L  D + L
Sbjct: 206 GRGPTGEVWRLFEDLPEMVAMC--AQLLSDDAAFL 238


>gi|309379284|emb|CBX22057.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 273

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 35/179 (19%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEI 239
              N  +        H++E VLA      G + +L  G+G  ++ +A  R    V A +I
Sbjct: 75  FAVNPNVLIPRPETEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVCASDI 133

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  ++E AR N A      V+    S   F   M  E              ++  I  +P
Sbjct: 134 SPSALETARKNAADLGAA-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNP 177

Query: 300 P--RSGLDDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
           P   +G +  + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 178 PYIENGDEHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|260433423|ref|ZP_05787394.1| SAM-dependent methyltransferase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417251|gb|EEX10510.1| SAM-dependent methyltransferase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 402

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 15/120 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVK 260
            A   G    +L+++   G F L  LA   D  L+V+ +  ++  A     A+   +  +
Sbjct: 222 AARLAGPGAHVLDVFSHVGGFGLAMLAGGADHALSVDGSAAALTLAEQGAVASGFGDRFE 281

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
             +  +            F+ L  +     +F  +  DPP        +   ++AY  I 
Sbjct: 282 TRQGDA------------FDVLTQLGEAGAQFDVVICDPPAFAPSKQALDAGLRAYERIA 329


>gi|221125682|ref|XP_002166528.1| PREDICTED: similar to tRNA methyltransferase 12 homolog [Hydra
           magnipapillata]
          Length = 350

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 118 IVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANK-----TKICLDRDYVD 168
           ++    H      W    ++  IR+    +A +  I+     +        + L  D   
Sbjct: 66  LILFPDHSFSLKIWEIFPQDFWIRVAKVFNAERIAIKSKIIGDGFRTPNVILRLGNDSWV 125

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-- 226
           E +    +   Y    N F++ N  I   +    +++       +++L+ G G F+L   
Sbjct: 126 EHIDNGIK-YAYDVRLNMFSKGN--ITEKLR---ISSFNCENEVVVDLFAGIGYFTLPYL 179

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +      V A E    ++ A + N+  N VN+  IV
Sbjct: 180 VKARAHTVYACEWNPNAIIALKRNLEINGVNDRCIV 215


>gi|15618442|ref|NP_224727.1| SAM dependent methyltransferase [Chlamydophila pneumoniae CWL029]
 gi|15836062|ref|NP_300586.1| SAM dependent methyltransferase [Chlamydophila pneumoniae J138]
 gi|16752510|ref|NP_444772.1| hypothetical protein CP0221 [Chlamydophila pneumoniae AR39]
 gi|33241883|ref|NP_876824.1| putative SAM dependent methyltransferase [Chlamydophila pneumoniae
           TW-183]
 gi|4376821|gb|AAD18671.1| SAM dependent methyltransferase [Chlamydophila pneumoniae CWL029]
 gi|7189151|gb|AAF38090.1| conserved hypothetical protein [Chlamydophila pneumoniae AR39]
 gi|8978902|dbj|BAA98737.1| SAM dependent methyltransferase [Chlamydophila pneumoniae J138]
 gi|33236393|gb|AAP98481.1| putative SAM dependent methyltransferase [Chlamydophila pneumoniae
           TW-183]
          Length = 275

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L+  +   K  Q  +L L+   G  S+  A+   RV  V+ ++ +V  A+ N+  N    
Sbjct: 97  LKQAIEKHKERQ--VLNLFAYTGAGSIFAAKCGARVTHVDASQAAVRWAQRNVEKNAFPE 154

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            +I              E   + LK     + +++ I +DPP  G   
Sbjct: 155 RRIF----------WVIEDVISFLKKEIRRNKKYQVILLDPPSYGRGP 192


>gi|28198634|ref|NP_778948.1| protoporphyrinogen oxidase [Xylella fastidiosa Temecula1]
 gi|182681318|ref|YP_001829478.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Xylella fastidiosa M23]
 gi|32129592|sp|Q87DF7|HEMK_XYLFT RecName: Full=Protein methyltransferase hemK homolog; AltName:
           Full=M.XfaHemK2P
 gi|28056718|gb|AAO28597.1| protoporphyrinogen oxidase [Xylella fastidiosa Temecula1]
 gi|182631428|gb|ACB92204.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Xylella fastidiosa M23]
 gi|307579768|gb|ADN63737.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 275

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L       +  + +L  G+G  +L +A  R   +VLA + +  +++ A  N 
Sbjct: 91  TETLVEQALQRLDHASERRVADLGTGSGAIALAIACERPQAQVLATDNSAAALDIAARNA 150

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +A+ +N+V     +   + +A+  ER              F  I  +PP
Sbjct: 151 SAHGLNHVVFREGN---WYEALLGER--------------FDLIVSNPP 182


>gi|283851857|ref|ZP_06369134.1| Methyltransferase type 11 [Desulfovibrio sp. FW1012B]
 gi|283572773|gb|EFC20756.1| Methyltransferase type 11 [Desulfovibrio sp. FW1012B]
          Length = 256

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
               + A + + G +L+  CGNG+ +LV AR    +  ++I++  VE AR   A   ++ 
Sbjct: 42  YHQAMEAVRPL-GRVLDYGCGNGDNALVFARRGLDITGIDISRSGVEHARAEAARVGLD- 99

Query: 259 VKIVRMSSKEF 269
            +   M +++ 
Sbjct: 100 TEFQVMDAEDL 110


>gi|194035597|ref|XP_001927670.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Sus
           scrofa]
          Length = 439

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 15/194 (7%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S    +  +   A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 99  CLEVSRWAESRGVTWSAELEAD--LPRSWQRHGDLLLLSEGCFQAKQWRNLEPELWETIA 156

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ +I   G        L  D+        G    +   +   SF      
Sbjct: 157 SALGVRRLAKRGRISPDGTRTPAVSLLLGDHGWVEHVDNGIRYKFDVTQCMFSF------ 210

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 211 --GNITEKLRVASLPCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNN 268

Query: 251 IAANHVNNVKIVRM 264
           +  N V +   +  
Sbjct: 269 LELNGVADRCQIHF 282


>gi|113954283|ref|YP_731453.1| ribosomal protein L11 methyltransferase [Synechococcus sp. CC9311]
 gi|113881634|gb|ABI46592.1| ribosomal protein L11 methyltransferase [Synechococcus sp. CC9311]
          Length = 268

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 14/165 (8%)

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
           +   +  L  +  +      A+   ++  L D+ W     +        +  + L     
Sbjct: 26  QDQRKQLLNSLRPMADTFGLALADPLWEELADEDWSLSWKKHWQPDPVGQRLLILPAW-- 83

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
                       E        L+ +    S     +     +    L A       + +L
Sbjct: 84  -----------LEVPEEHAHRLVLKMDPGSAFGTGSHPTTRLCLEALEAMPPHHQRVADL 132

Query: 217 YCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            CG+G   L  LA   D VLA +    +V A   N A N +   +
Sbjct: 133 GCGSGVLGLASLALGADEVLAADTDSLAVRATTDNAALNGLKAAQ 177


>gi|77460968|ref|YP_350475.1| modification methylase HemK [Pseudomonas fluorescens Pf0-1]
 gi|77384971|gb|ABA76484.1| [protein release factor]-glutamine N5-methyltransferase
           [Pseudomonas fluorescens Pf0-1]
          Length = 276

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 19/96 (19%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                 +L+L  G+G  +L LA  R   +V AV+    +V  A  N    H+NN  +   
Sbjct: 106 PATPAKVLDLGTGSGAIALALASERPAWKVTAVDRVLEAVALAERNRQRLHLNNATV--- 162

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                          +      +   RF+ I  +PP
Sbjct: 163 --------------LSSHWFSALEGKRFELIISNPP 184


>gi|332667230|ref|YP_004450018.1| type 11 methyltransferase [Haliscomenobacter hydrossis DSM 1100]
 gi|332336044|gb|AEE53145.1| Methyltransferase type 11 [Haliscomenobacter hydrossis DSM 1100]
          Length = 268

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF----DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A       +L+L  G GN    +ARH      +V+ V+ ++  +  AR N+A    NNV+
Sbjct: 71  AQIKPGDTVLDLGSGAGN-DCFVARHETGEKGQVIGVDFSEAMIARARTNVAKLGFNNVE 129

Query: 261 IVRMSSKEFTQA 272
                 +    A
Sbjct: 130 FRHGDIENLPVA 141


>gi|299531472|ref|ZP_07044878.1| modification methylase, HemK family protein [Comamonas testosteroni
           S44]
 gi|298720435|gb|EFI61386.1| modification methylase, HemK family protein [Comamonas testosteroni
           S44]
          Length = 285

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 20/125 (16%)

Query: 195 NVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              +++W L    +G    +++L  G+G  +L L   R   RV+AV+ +  ++  A  N 
Sbjct: 102 TETLVDWALELLPEGAAHRVVDLGTGSGAIALALQSQRPSARVIAVDASADALAVASSNA 161

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A   +  V+    S                L+ +D        I  +PP    DD  +  
Sbjct: 162 ARLQLP-VQFAHGS---------------WLQPLDGQEPV-DLIVSNPPYIRADDPHLAA 204

Query: 312 VQAYP 316
           +   P
Sbjct: 205 LTHEP 209


>gi|293603173|ref|ZP_06685606.1| UbiE/COQ5 family methyltransferase [Achromobacter piechaudii ATCC
           43553]
 gi|292818404|gb|EFF77452.1| UbiE/COQ5 family methyltransferase [Achromobacter piechaudii ATCC
           43553]
          Length = 256

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 30/76 (39%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +L+    A       +L+L CG G+ +  +A     V A ++++  ++      
Sbjct: 27  HAQGEDLLQMAGIARAHSTARVLDLGCGGGHVTFHVAPEVKDVTAYDLSQQMLDVVAGEA 86

Query: 252 AANHVNNVKIVRMSSK 267
           A   + NV   +  ++
Sbjct: 87  AKRGLANVATRQGKAE 102


>gi|268326075|emb|CBH39663.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
 gi|268326206|emb|CBH39794.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
          Length = 278

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/76 (14%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              M+  +          +L++  G G  ++ LA+    V A++ +K  +   + N    
Sbjct: 52  AERMIAKL---DIEPDDTVLDIGAGPGTLAIPLAKMVKHVTAIDPSKGMLAYLKENAVTE 108

Query: 255 HVNNVKIVRMSSKEFT 270
            + N+  +    ++  
Sbjct: 109 GLKNITCINKKWEDVA 124


>gi|225376990|ref|ZP_03754211.1| hypothetical protein ROSEINA2194_02632 [Roseburia inulinivorans DSM
           16841]
 gi|225211167|gb|EEG93521.1| hypothetical protein ROSEINA2194_02632 [Roseburia inulinivorans DSM
           16841]
          Length = 475

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 20/116 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNI 251
               ML ++          +L+  CG G   +   +         ++I   +++ AR N 
Sbjct: 333 ATAAMLMYLAKPYLKENAQILDPCCGVGTMLIERDILVPAREKYGIDIFGDAIDMARENA 392

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           A      +  +     +F                  H Y+F  I  + P  G    
Sbjct: 393 ALAG-EKINFIHRDYFDF-----------------KHDYKFDEIVTNMPVKGKKAK 430


>gi|153956378|ref|YP_001397143.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|219856691|ref|YP_002473813.1| hypothetical protein CKR_3348 [Clostridium kluyveri NBRC 12016]
 gi|146349236|gb|EDK35772.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
 gi|219570415|dbj|BAH08399.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 246

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 17/108 (15%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           A       +++L  G G    +L+      +++ +EI K  VE +   +  N++ N ++ 
Sbjct: 42  ARVKRGARVIDLCSGTGIVPFILSGKTQAGKIIGIEIQKDMVEMSIRTVKFNNMENIIEF 101

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           V    K+           N LK I     +   + V+PP        +
Sbjct: 102 VNRDLKDL----------NYLKSIP----KADVVTVNPPYKLKGSGII 135


>gi|123484465|ref|XP_001324273.1| Met-10+ like-protein [Trichomonas vaginalis G3]
 gi|121907153|gb|EAY12050.1| Met-10+ like-protein [Trichomonas vaginalis G3]
          Length = 378

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 75/233 (32%), Gaps = 30/233 (12%)

Query: 60  HIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIV 119
           +++ D   K  + I         +   + E         L   +L  I+ L     + +V
Sbjct: 43  NVVDDPNGKRIILIPEVTELPKEVLEKVPEAKLEPYPVTLTYKQLTYIELLRHYIPEPLV 102

Query: 120 T--------LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-----------TKI 160
                     I H  L D        + + +  +   I+ +                  I
Sbjct: 103 IPTSFETIGHIAHLNLPDELLPYKKVIGECIILKNPCIKTVAIKQGPINNVYRNMELEVI 162

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLLELYC 218
               D++ E   V      ++     F++   N+ +        + AT      + +  C
Sbjct: 163 AGKNDFITE---VKQSGFTFKM---DFSKVYWNSRLQYE--HDSVVATFKENSLVCDAMC 214

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFT 270
           G G F++  A+   RV A ++   S    + N   N V  NV+   M ++EF 
Sbjct: 215 GIGPFAVRAAKKGCRVRANDLNPDSYYWLKENCKINGVSENVECFNMDAREFI 267


>gi|332981299|ref|YP_004462740.1| ribosomal protein L11 methyltransferase [Mahella australiensis 50-1
           BON]
 gi|332698977|gb|AEE95918.1| ribosomal protein L11 methyltransferase [Mahella australiensis 50-1
           BON]
          Length = 312

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +L +       ++++ CG+G  S+  A+    +VLA+++   +V  A  N   N V ++ 
Sbjct: 169 LLESHMMADSSIIDVGCGSGVLSIAAAKLGAKKVLALDVDPVAVRVASENAKLNCVEDIV 228

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF----VDPPRSGLDDATVG 310
            VR +  +    +      +   DI I +     I       PPR       + 
Sbjct: 229 EVRKN--DLLDGL------DVQADIIIANIVADVIIRLLPQIPPRLKKPGLFIA 274


>gi|332290706|ref|YP_004429315.1| hypothetical protein Krodi_0056 [Krokinobacter diaphorus 4H-3-7-5]
 gi|332168792|gb|AEE18047.1| hypothetical protein Krodi_0056 [Krokinobacter diaphorus 4H-3-7-5]
          Length = 402

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 207 KGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAAN-HVNNVKIVRM 264
                 +L+++   G FS+  LA     VL+++I+  +++ A  N   N H  N KI+ +
Sbjct: 227 MAKGKTVLDVFSYAGGFSVHALAGGATEVLSLDISAQALQVALDNGKLNKHAGNHKILAI 286

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            +            F  L+ +     ++  + +DPP        V   +
Sbjct: 287 DA------------FVGLQQLIDEGEKYDIVVIDPPSFAKSAKEVNTAR 323


>gi|332075635|gb|EGI86103.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus pneumoniae GA17545]
          Length = 279

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 35/175 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+   +L V  R LI R                ++E +LA     
Sbjct: 62  QLAAHKPAQYIIGQEDFYGMQLKVDERVLIPRPE-----------TEELVELILAENSET 110

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A +I++ +++ A  N       N++I    S 
Sbjct: 111 NLSVLDIGTGSGAIALALAKNRPDWSVTAADISQDALDVANENAKN---QNLQIFLKKSD 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPHIL 319
            FT+                 S ++  I  +PP   R    +  + ++ + PH+ 
Sbjct: 168 CFTE----------------ISEKYDIIVSNPPYISREDESEVGLNVLHSEPHLA 206


>gi|296131709|ref|YP_003638956.1| Methyltransferase type 12 [Thermincola sp. JR]
 gi|296030287|gb|ADG81055.1| Methyltransferase type 12 [Thermincola potens JR]
          Length = 216

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F        + M  ++          +LEL  G G   +V A     V   ++   +++ 
Sbjct: 39  FWAVLWPAAIGMARFLWQGPDLTGQKILELGAGLGLAGIVAAAKNGVVYQTDLFPEALDF 98

Query: 247 ARYNIAANHVNNVKIVRMS------SKEF-----TQAMRREREFNRLKDIDIHSYRF--K 293
             +N   N V N+K ++        +++F     +  +     +  LK I     +   +
Sbjct: 99  CAFNAKLNKVGNIKRIQADWRSFEITEDFDIILGSDILYEPTLYPYLKSIFYRLLKPGGR 158

Query: 294 TIFVDPPRSGLDDATVGM 311
            I  DP R    +   G+
Sbjct: 159 IILSDPGRKDAQEFICGL 176


>gi|294896748|ref|XP_002775712.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239881935|gb|EER07528.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 1162

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 60/173 (34%), Gaps = 19/173 (10%)

Query: 203  LAATKGIQGDLLELYCG--NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +         +++LY    +G F+ +L    +  +   +    VE      ++ +  +  
Sbjct: 852  IVNMCETDDRIVDLYASRTHGLFTGLLVAVGNPTITCVLDSRMVEGNHTIASSFNDEDAH 911

Query: 261  IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ--AYPHI 318
             + +S                L D+DI       +   PP  G+       +   A   I
Sbjct: 912  FLEVS---------NLSTPEGLIDLDIEGPVGTLLLTPPPEEGVSSCVREWIDEVAPQRI 962

Query: 319  LYISCNPDSLCRDLSILSTT------HTIERLALFDQFPYTRHMECGVLLVRK 365
            +Y + +  S   D+  L+ +      + +  L  FD  P+T      +L+ R+
Sbjct: 963  VYHNTSFQSATDDIRNLAKSKRDGVSYRVIELKGFDTNPHTMECSIVLLMQRE 1015


>gi|313127172|ref|YP_004037442.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
 gi|312293537|gb|ADQ67997.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Halogeometricum borinquense DSM 11551]
          Length = 238

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKE 268
             D+LE+ CG G F+++LA     ++ ++I++  ++  R         ++V+ +R  +  
Sbjct: 45  DKDVLEIACGTGRFTVMLAERGADIVGLDISRAMMQQGREKARRAGVADHVEFLRGDAAR 104

Query: 269 F 269
            
Sbjct: 105 L 105


>gi|164427405|ref|XP_001728384.1| hypothetical protein NCU10483 [Neurospora crassa OR74A]
 gi|157071729|gb|EDO65293.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 449

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LY G G F    A+   RVL  EI   SVE  R    AN  + VK+ +   ++ T+  
Sbjct: 353 LDLYAGIGYFVFSYAKLGMRVLCWEINPWSVEGLRRGAVANKWS-VKVFQGE-EDLTKKT 410

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
             E     L++ D    +          +G
Sbjct: 411 TAEL----LQEADAEGVQIVVFLEGNESAG 436


>gi|152969558|ref|YP_001334667.1| putative SAM-dependent methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150954407|gb|ABR76437.1| putative SAM-dependent methyltransferase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 391

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L     +V +V+ ++ +++ AR N+  N ++  
Sbjct: 207 RLATRRYVADKRVLNCFSYTGGFAVSALMGGCRQVTSVDTSQEALDVARQNVEINGLD-- 264

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
               +S  EF     R+  F  L+       +F  I +DPP+   +    +G  + Y  I
Sbjct: 265 ----LSKAEFV----RDDVFKLLRKYRDQGEKFDVIVMDPPKFVENKSQLMGACRGYKDI 316


>gi|77920282|ref|YP_358097.1| putative protoporphyrinogen oxidase [Pelobacter carbinolicus DSM
           2380]
 gi|77546365|gb|ABA89927.1| [protein release factor]-glutamine N5-methyltransferase [Pelobacter
           carbinolicus DSM 2380]
          Length = 287

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 21/108 (19%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIA 252
              ++E  L    G    +L++  G+G  ++ LA      +V+A++I   ++  A  N  
Sbjct: 101 TEVLVEEALRVANGS--RVLDVGTGSGAIAIALAHELADAQVVALDICPQALAVAADNAR 158

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N V++   VR   ++  Q               +    F  I  +PP
Sbjct: 159 RNGVDD--RVRFLERDLAQ---------------LPEGPFDLIVSNPP 189


>gi|126727795|ref|ZP_01743625.1| ribosomal RNA small subunit methyltransferase B, putative
           [Rhodobacterales bacterium HTCC2150]
 gi|126702922|gb|EBA02025.1| ribosomal RNA small subunit methyltransferase B, putative
           [Rhodobacterales bacterium HTCC2150]
          Length = 423

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           VLA        +L++    G  ++ +A     V AV+ +   ++    N+A   ++  ++
Sbjct: 226 VLALAAQKGERVLDMCAAPGGKTMQMAASGAHVTAVDQSAERLKLVHENLARTGLD-AEV 284

Query: 262 VRMSSKEFTQAMRREREFN----------RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           V   + + T+        +          R  D+           +   +  + D  + +
Sbjct: 285 VVADAFDLTEGGYDAILLDAPCSATGTLRRHPDLPFVKDGKDVGAIVALQGRMLDHALTL 344

Query: 312 VQAYPHILYISC 323
           ++    I+Y +C
Sbjct: 345 LKPGGRIVYCTC 356


>gi|194366513|ref|YP_002029123.1| 3-demethylubiquinone-9 3-methyltransferase [Stenotrophomonas
           maltophilia R551-3]
 gi|194349317|gb|ACF52440.1| ubiquinone biosynthesis O-methyltransferase [Stenotrophomonas
           maltophilia R551-3]
          Length = 238

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +N   L++V          +L++ CG G  S  LA+    V A+++A   V+ AR + 
Sbjct: 36  HALNPVRLQYVADRVPLRGARVLDIGCGGGLLSEALAQAGADVTAIDLAPELVKVARLHA 95

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
             +    V     ++++         +     ++  H      I 
Sbjct: 96  LESGAT-VDYRVQAAEDLAAEQPGSFDVVTCMEMLEHVPDPGAII 139


>gi|22124723|ref|NP_668146.1| hypothetical protein y0810 [Yersinia pestis KIM 10]
 gi|108808869|ref|YP_652785.1| hypothetical protein YPA_2878 [Yersinia pestis Antiqua]
 gi|108810877|ref|YP_646644.1| hypothetical protein YPN_0712 [Yersinia pestis Nepal516]
 gi|145600236|ref|YP_001164312.1| hypothetical protein YPDSF_2979 [Yersinia pestis Pestoides F]
 gi|153947905|ref|YP_001402277.1| hypothetical protein YpsIP31758_3320 [Yersinia pseudotuberculosis
           IP 31758]
 gi|167469901|ref|ZP_02334605.1| hypothetical protein YpesF_18909 [Yersinia pestis FV-1]
 gi|170025665|ref|YP_001722170.1| hypothetical protein YPK_3450 [Yersinia pseudotuberculosis YPIII]
 gi|186894113|ref|YP_001871225.1| hypothetical protein YPTS_0784 [Yersinia pseudotuberculosis PB1/+]
 gi|229839014|ref|ZP_04459173.1| hypothetical protein YPH_1288 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896493|ref|ZP_04511661.1| hypothetical protein YPS_4324 [Yersinia pestis Pestoides A]
 gi|229899580|ref|ZP_04514721.1| hypothetical protein YPF_4070 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901086|ref|ZP_04516209.1| hypothetical protein YP516_0756 [Yersinia pestis Nepal516]
 gi|270489266|ref|ZP_06206340.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia pestis KIM
           D27]
 gi|21957539|gb|AAM84397.1|AE013683_10 hypothetical [Yersinia pestis KIM 10]
 gi|108774525|gb|ABG17044.1| conserved hypothetical protein [Yersinia pestis Nepal516]
 gi|108780782|gb|ABG14840.1| conserved hypothetical protein [Yersinia pestis Antiqua]
 gi|145211932|gb|ABP41339.1| conserved hypothetical protein [Yersinia pestis Pestoides F]
 gi|152959400|gb|ABS46861.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
           31758]
 gi|169752199|gb|ACA69717.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII]
 gi|186697139|gb|ACC87768.1| conserved hypothetical protein [Yersinia pseudotuberculosis PB1/+]
 gi|229681811|gb|EEO77904.1| hypothetical protein YP516_0756 [Yersinia pestis Nepal516]
 gi|229687072|gb|EEO79147.1| hypothetical protein YPF_4070 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695380|gb|EEO85427.1| hypothetical protein YPH_1288 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700567|gb|EEO88598.1| hypothetical protein YPS_4324 [Yersinia pestis Pestoides A]
 gi|270337770|gb|EFA48547.1| 23S rRNA 5-methyluridine methyltransferase [Yersinia pestis KIM
           D27]
 gi|320016579|gb|ADW00151.1| hypothetical protein YPC_3705 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 41

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 338 THTIERLALFDQFPYTRHMECGVLL 362
            + + ++   D FP+T H+E   L 
Sbjct: 9   GYRLAQVRTLDMFPHTGHLESMALF 33


>gi|39996346|ref|NP_952297.1| methyltransferase [Geobacter sulfurreducens PCA]
 gi|39983226|gb|AAR34620.1| methyltransferase, putative [Geobacter sulfurreducens PCA]
          Length = 187

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 15/111 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
            +L+L+ G GN  +  L+R     + V+  + SV   R N+      +  +I+   +   
Sbjct: 47  RVLDLFAGTGNLGIEALSRGCSEAVFVDSHRESVAVIRRNLDELGFGDRARIIARDALTA 106

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
              + RE    RL            + +DPP R GL D  +G +   P I 
Sbjct: 107 IDYLEREGASFRL------------VMLDPPYRLGLADKVLGRLAGSPLIA 145


>gi|296242613|ref|YP_003650100.1| 16S rRNA m(2)G 1207 methyltransferase [Thermosphaera aggregans DSM
           11486]
 gi|296095197|gb|ADG91148.1| 16S rRNA m(2)G 1207 methyltransferase [Thermosphaera aggregans DSM
           11486]
          Length = 192

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 20/110 (18%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRM 264
            ++G++L++ CG G   +VLA+     RV   ++   +V+ A++N   N V + V I++ 
Sbjct: 52  PVEGEVLDVGCGYGVIGIVLAKLNPRLRVYMTDVNPLAVKTAQHNAELNGVGDRVVILQG 111

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
              E                  +    F  I+ +PP S        +V  
Sbjct: 112 DRYE-----------------PVKDKVFNAIYSNPPLSAGMRIVEEIVLG 144


>gi|291615312|ref|YP_003525469.1| ribosomal protein L11 methyltransferase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585424|gb|ADE13082.1| ribosomal protein L11 methyltransferase [Sideroxydans
           lithotrophicus ES-1]
          Length = 296

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 20/122 (16%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+    KG +  +L+  CG+G  ++   +      + V++   +V+++R N AAN V 
Sbjct: 155 LRWLDENIKGGE-TVLDYGCGSGILAIAAMKLGAGSAVGVDVDAQAVKSSRDNAAANQV- 212

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                   S +F             K +D H      I  +P R+ L        ++   
Sbjct: 213 --------SADFF--------LPEGKVLDQHDVVVANILTNPLRA-LAPLLASATRSGGR 255

Query: 318 IL 319
           I+
Sbjct: 256 IV 257


>gi|170047287|ref|XP_001851159.1| tRNA methyltransferase [Culex quinquefasciatus]
 gi|167869740|gb|EDS33123.1| tRNA methyltransferase [Culex quinquefasciatus]
          Length = 466

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV------ 256
           +A     +  LL++Y G G FS+ +A+    VLA ++   S +A  +N   N V      
Sbjct: 217 VAKMLRKEDILLDIYAGVGPFSIPVAKKGCSVLANDLNPESYKALVHNCKKNKVEGRVKC 276

Query: 257 ---NNVKIVRMSSKEFTQAMRREREF 279
              N +  +R   K F   + ++ +F
Sbjct: 277 FNRNGIDFIREEVKTFIVEINKKDDF 302


>gi|88810640|ref|ZP_01125897.1| 3-demethylubiquinone-9 3-methyltransferase [Nitrococcus mobilis
           Nb-231]
 gi|88792270|gb|EAR23380.1| 3-demethylubiquinone-9 3-methyltransferase [Nitrococcus mobilis
           Nb-231]
          Length = 234

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L +V     G+    ++++ CG G  S  +AR   RVL +++A+ S+  AR +
Sbjct: 31  HQINPLRLAYVEQCLGGLANRRIVDVGCGGGLLSEAMARRGARVLGIDLAERSLAVARLH 90

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
            A  H   V     S +E  Q+  R  EF+ +  +++  +       
Sbjct: 91  AAEAH-TAVDYQLTSVEELAQS--RPHEFDAVTCMELLEHVPDPAMS 134


>gi|331662334|ref|ZP_08363257.1| protein SmtA [Escherichia coli TA143]
 gi|331060756|gb|EGI32720.1| protein SmtA [Escherichia coli TA143]
          Length = 207

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|326917640|ref|XP_003205104.1| PREDICTED: trimethylguanosine synthase-like [Meleagris gallopavo]
          Length = 887

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 18/101 (17%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
            +++ +CG G  ++  A    RV+AV+I    +  AR N     V N ++ V        
Sbjct: 729 TIVDAFCGVGGNAIQFALTSKRVIAVDIDPEKLSLARSNAEVYGVANQIEFVCGD----- 783

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                         +     +   +F+ PP  G D AT  +
Sbjct: 784 ------------FMVLAADLKADVVFLSPPWGGPDYATAEI 812


>gi|311234828|gb|ADP87682.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Desulfovibrio vulgaris RCH1]
          Length = 623

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 20/149 (13%)

Query: 183 IENSFTQPNAGINVHMLEW------VLAATKGIQGDLLELYCGNGNFSLVLARHFDR--V 234
           + ++F    A     + +W      + A        + ++  G+G  S+  A    R  V
Sbjct: 429 MPDTFF---AAEAGLLTKWPVRAVALAALRVNPADTVWDVGAGSGAMSVECAAVASRGSV 485

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            AVE     V     N       N+++V   +     ++           +   S     
Sbjct: 486 WAVERDAARVVCVEENRRRMGAANIEVVHGDAPACLASLPTPDRVFMGGGLGGISADASC 545

Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISC 323
             +              +     ++ ++C
Sbjct: 546 PVL--------HTVCERLAPGGRVV-VAC 565


>gi|303328440|ref|ZP_07358877.1| RNA methyltransferase, RsmD family [Desulfovibrio sp. 3_1_syn3]
 gi|302861434|gb|EFL84371.1| RNA methyltransferase, RsmD family [Desulfovibrio sp. 3_1_syn3]
          Length = 183

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 15/114 (13%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                   +  +L+L+ G+G+ +   L+R     L VE A P++   + N+AA  +    
Sbjct: 37  AARGLVWSEARVLDLFAGSGSLAFEALSRGAPNALLVENAAPAMRCLQENVAALGLEG-- 94

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ 313
             R+S ++  + ++R+               F  +F+DPP R  L +  +  + 
Sbjct: 95  RARLSKEDVLRFLKRQ-----------PPEGFDLVFMDPPYRKNLAEPALRALA 137


>gi|260592501|ref|ZP_05857959.1| ribosomal protein L11 methyltransferase [Prevotella veroralis
           F0319]
 gi|260535547|gb|EEX18164.1| ribosomal protein L11 methyltransferase [Prevotella veroralis
           F0319]
          Length = 288

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M+  +L         +L+  CG G   +V A+     V A +I + SV  A++N   
Sbjct: 137 TTQMIVSLLLNQNLTGKRVLDCGCGTGILGIVAAKYGVKEVFAYDIDEWSVNNAQHNAEL 196

Query: 254 NHVN 257
           N V 
Sbjct: 197 NEVE 200


>gi|257081919|ref|ZP_05576280.1| modification methylase HemK [Enterococcus faecalis E1Sol]
 gi|256989949|gb|EEU77251.1| modification methylase HemK [Enterococcus faecalis E1Sol]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAK 156

Query: 253 ANHVNNVKIVRMS 265
               + ++    +
Sbjct: 157 VLGAD-IEFYHGN 168


>gi|187923068|ref|YP_001894710.1| methyltransferase type 11 [Burkholderia phytofirmans PsJN]
 gi|187714262|gb|ACD15486.1| Methyltransferase type 11 [Burkholderia phytofirmans PsJN]
          Length = 250

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 30/78 (38%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           P       +     +        +L++ CG G+ S  +A H   V+A +IA   +     
Sbjct: 22  PTHATGADLRALAESIAATPDATVLDMGCGAGHASFAVAPHAREVVAYDIAPQMLATVEG 81

Query: 250 NIAANHVNNVKIVRMSSK 267
                 + N++  + +++
Sbjct: 82  AAKERGLANIRTQQGAAE 99


>gi|57530384|ref|NP_001006389.1| trimethylguanosine synthase [Gallus gallus]
 gi|53133774|emb|CAG32216.1| hypothetical protein RCJMB04_20d7 [Gallus gallus]
          Length = 889

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 18/101 (17%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
            +++ +CG G  ++  A    RV+AV+I    +  AR N     V N ++ V        
Sbjct: 731 TIVDAFCGVGGNAIQFALTSKRVIAVDIDPEKLSLARSNAEVYGVANQIEFVCGD----- 785

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                         +     +   +F+ PP  G D AT  +
Sbjct: 786 ------------FMVLAADLKADVVFLSPPWGGPDYATAEI 814


>gi|332828070|gb|EGK00792.1| hypothetical protein HMPREF9455_03066 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 269

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 212 DLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G GN    +AR       RV+ ++ +   +E AR N       NV+ +    +
Sbjct: 80  TVLDLGSGAGN-DCFIARAEVGETGRVIGIDFSLQMIEKARKNATKRGYTNVEFIEGDIE 138


>gi|322825513|gb|EFZ30448.1| hypothetical protein TCSYLVIO_3259 [Trypanosoma cruzi]
          Length = 419

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 7/155 (4%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           V  RL  A  +L+    +  F   N          +L      +  +LE+  G+G  SL+
Sbjct: 63  VPGRLRHAPTSLVEAVNDFHFAMMNDQPRNEFYYELLKRHVTPETGVLEIGAGSGLLSLM 122

Query: 227 LAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKD 284
            A+     V+AVE +    + AR NI AN + + V ++ M S E T      R      D
Sbjct: 123 AAQLGAKWVVAVEGSAEMAKLARANICANKMEHKVTVLHMLSTELT-----LRHLPDRPD 177

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           + +       +  +     + D    +++    I+
Sbjct: 178 VMVSEILGTLLLGESALDYIADVRERLLKPTTKII 212


>gi|298505356|gb|ADI84079.1| DNA methyltransferase, putative [Geobacter sulfurreducens KN400]
          Length = 187

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 15/111 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
            +L+L+ G GN  +  L+R     + V+  + SV   R N+      +  +I+   +   
Sbjct: 47  RVLDLFAGTGNLGIEALSRGCSEAVFVDSHRESVAVIRRNLDELGFGDRARIIARDALTA 106

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
              + RE    RL            + +DPP R GL D  +G +   P I 
Sbjct: 107 IDFLEREGASFRL------------VMLDPPYRLGLADKVLGRLAGSPLIA 145


>gi|258405077|ref|YP_003197819.1| arsenite S-adenosylmethyltransferase [Desulfohalobium retbaense DSM
           5692]
 gi|257797304|gb|ACV68241.1| Methyltransferase type 11 [Desulfohalobium retbaense DSM 5692]
          Length = 265

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 15/126 (11%)

Query: 212 DLLELYCGNGNFSLVLARHF----DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G F   LA        RV+ V++    +  AR N       NV+      +
Sbjct: 82  TVLDLGSG-GGFDSFLAARAVGETGRVIGVDMTPDMLSKARANAEQGGYANVEFRLGEIE 140

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTI-----FVDPPRSGLDDATVGMVQAYPHI---- 318
               A            I++   + +        + P         V   +    I    
Sbjct: 141 HLPVADASVDVILSNCVINLSPDKPQVFAEMYRVLRPGGRVAIADVVARSELPETIRTDM 200

Query: 319 -LYISC 323
            LY SC
Sbjct: 201 RLYTSC 206


>gi|221124252|ref|XP_002159425.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
          Length = 286

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+     G  G +L+  CG+G  ++  A+     V+AV+I + +V++   N  ANHV 
Sbjct: 148 LRWIAR--NGGSGRVLDYGCGSGILAIGAAKFGATEVIAVDIDQAAVDSTVLNAEANHVT 205

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLK 283
            V  +  +++     +        LK
Sbjct: 206 LVSGLPEAAQGVFDVVLANILATPLK 231


>gi|163791692|ref|ZP_02186086.1| hypothetical protein CAT7_03769 [Carnobacterium sp. AT7]
 gi|159873040|gb|EDP67150.1| hypothetical protein CAT7_03769 [Carnobacterium sp. AT7]
          Length = 201

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 19/147 (12%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
             T+ G+   +      F++        +L      +  I GDLL++ CG G   L LA+
Sbjct: 20  TYTLRGQEFKFVTDAGVFSKKTVDFGSRLLIEAFDFSGMIPGDLLDVGCGYGPMGLALAK 79

Query: 230 --HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                +V  V++ + ++  A+ N + N ++NV I      E                  +
Sbjct: 80  DDPERKVEMVDVNERALGLAKQNASNNRLSNVLIHTSDIYE-----------------SV 122

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQA 314
               F  I  +PP     +   G++  
Sbjct: 123 VGKDFAAIVSNPPIRAGKEVVHGILTG 149


>gi|256616930|ref|ZP_05473776.1| modification methylase HemK [Enterococcus faecalis ATCC 4200]
 gi|307276805|ref|ZP_07557916.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2134]
 gi|256596457|gb|EEU15633.1| modification methylase HemK [Enterococcus faecalis ATCC 4200]
 gi|306506442|gb|EFM75601.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2134]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAVSLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|258405576|ref|YP_003198318.1| Methyltransferase type 11 [Desulfohalobium retbaense DSM 5692]
 gi|257797803|gb|ACV68740.1| Methyltransferase type 11 [Desulfohalobium retbaense DSM 5692]
          Length = 366

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 2/93 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNV 259
            +         + ++ CG G   L++A  F R   + ++I   +V+ AR   AA  + NV
Sbjct: 171 AIQDRLHYGIRVCDVGCGRGTAVLLMAEAFPRSTFVGLDIDSATVDLARNTAAARGLTNV 230

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           + V   +     A   +  F+ +   D    + 
Sbjct: 231 RFVCRDAAVLEDAADWQDCFDYVTAFDAIHDQP 263


>gi|255538280|ref|XP_002510205.1| conserved hypothetical protein [Ricinus communis]
 gi|223550906|gb|EEF52392.1| conserved hypothetical protein [Ricinus communis]
          Length = 263

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/89 (11%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ + G G  ++  A+    V+A+++    ++ A +N +     + +  +         
Sbjct: 100 IIDCFTGVGGNAIQFAQRCKHVIAIDVDPKKIDYAYHNASIYGVADQIDFITGDFFNLAP 159

Query: 272 AMRREREF--NRLKDIDIHSYRFKTIFVD 298
            ++ +  F        D    +   I   
Sbjct: 160 KLKADTVFLSPPWGGPDYAKVKTYNIITM 188


>gi|223995835|ref|XP_002287591.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976707|gb|EED95034.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 269

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 27/178 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +L W+          + +  CG G+ ++ LA+    + A +I+      A     A  
Sbjct: 90  QKILNWIKDDGDIKGKTVCDCGCGVGSLAIPLAQMGAEISASDISDAMATEAAARAKAMG 149

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           + N K      +  T       ++N +  +D        + +  P   + +    +    
Sbjct: 150 IENAKFYTSDLESVT------GKYNTVTCVD--------VAIHYPTEKMAEMVGHLCSLA 195

Query: 316 PHILYISCNPDSLCRDL-----SILSTTHTIERLALFDQFPYTRHMECGVLLVRKPSG 368
              + IS  P +   DL      +        R  L        H E  V    K +G
Sbjct: 196 DERVLISFAPKTWYYDLLKKFGELFPGPSKTTRAYL--------HEESVVREALKKAG 245


>gi|217076536|ref|YP_002334252.1| ribosomal protein L11 methyltransferase [Thermosipho africanus
           TCF52B]
 gi|259534593|sp|B7IFP7|PRMA_THEAB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|217036389|gb|ACJ74911.1| ribosomal protein L11 methyltransferase [Thermosipho africanus
           TCF52B]
          Length = 260

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              +    L        D+L+L CG+   S+ LA+    DRVL V+    +VEAA+ N+ 
Sbjct: 118 TTKLSAKFLKKYLRPGMDVLDLGCGSAILSI-LAKKLGADRVLGVDNDPLAVEAAKENVE 176

Query: 253 ANHVN 257
            N+V+
Sbjct: 177 RNNVD 181


>gi|197336407|ref|YP_002157239.1| RNA methyltransferase, RsmD family [Vibrio fischeri MJ11]
 gi|197317897|gb|ACH67344.1| RNA methyltransferase, RsmD family [Vibrio fischeri MJ11]
          Length = 200

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 22/115 (19%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G       +R  + V+ +E+ K +    + N  +   +N++I    +  F   
Sbjct: 66  LDLFSGSGGLGFEAASRGAEHVVMLELNKQAHAQLKQNAESLKADNIEIHHTDALTFLNQ 125

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPH-----ILYI 321
                           +  F  +F+DPP R  L + T+  ++         ++YI
Sbjct: 126 ---------------AATPFDVVFIDPPFRKDLLEETLTKLENNGWLAANAMIYI 165


>gi|239828603|ref|YP_002951227.1| modification methylase, HemK family [Geobacillus sp. WCH70]
 gi|239808896|gb|ACS25961.1| modification methylase, HemK family [Geobacillus sp. WCH70]
          Length = 288

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 30/150 (20%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGI------NVHMLEWVLAATK-----GIQGD 212
           R +V E + V     + +     F   N  +         ++E VL             D
Sbjct: 62  RKHVYEHVPVQHLIGLEQFYGRPFL-VNRNVLIPRPETEELVEGVLTRITQLFPGNKTID 120

Query: 213 LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++++  G+G  ++ LA      RV A++IA  ++E A+ N      + V  +        
Sbjct: 121 VVDVGTGSGAIAITLALENKSLRVAAIDIAPEALEVAKRNAERLGAD-VAFICGDL---- 175

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                      L+ +   S +   +  +PP
Sbjct: 176 -----------LQPLVEASRKVDVVVSNPP 194


>gi|124486534|ref|YP_001031150.1| hypothetical protein Mlab_1722 [Methanocorpusculum labreanum Z]
 gi|124364075|gb|ABN07883.1| hypothetical protein Mlab_1722 [Methanocorpusculum labreanum Z]
          Length = 279

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 31/69 (44%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           H L  + A        +L++ CG G  ++ +A+    V A + A+  +   + N+   ++
Sbjct: 46  HTLNQINAIPLRPTDTVLDMGCGPGRITVPVAQRVSSVTAADSAESMLAYCKENVKKANL 105

Query: 257 NNVKIVRMS 265
            NV  V + 
Sbjct: 106 TNVDPVFLD 114


>gi|45357712|ref|NP_987269.1| putative RNA methylase [Methanococcus maripaludis S2]
 gi|45047272|emb|CAF29705.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 350

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 90/257 (35%), Gaps = 43/257 (16%)

Query: 80  SLLINALMIEMMATIRLE------PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           S +IN  + E +            P+ R + F +  L  + +    ++   R L    ++
Sbjct: 75  SPIINQNVDETLENFFKSSETLDFPVERDETFAVRVLKLEKESPFNSMEIERKLGGIIKK 134

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
                         Q+ L   +   K+ +  D +   + +  R + Y        Q N  
Sbjct: 135 KTSA----------QVSLKNPSKTVKVVISNDKMYTGIVIEKRDVEY-------FQNNRP 177

Query: 194 ----------INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
                     I   +   ++  ++  +G+ +L+ +CG G F +       +++  +I + 
Sbjct: 178 HLRAYFHPGCIMPKLARCLVNLSRVKEGEIVLDPFCGTGGFLIEAGFLGCKLIGSDIDEQ 237

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            V  A  N+  N  +  K V    +   + + +  E  +++ ID        I  DPP  
Sbjct: 238 MVNGALLNL--NTYDLSKQVISIKENDAKNVSKYLEALKIEKID-------GIVTDPPYG 288

Query: 303 GLDDATVGMVQAYPHIL 319
                   M++ +  I+
Sbjct: 289 ISTSKKGDMLEIFEKIV 305


>gi|13508101|ref|NP_110050.1| HemK family methylase [Mycoplasma pneumoniae M129]
 gi|2496353|sp|P75419|Y362_MYCPN RecName: Full=Uncharacterized protein MG259 homolog
 gi|1674165|gb|AAB96122.1| hemk family protein [Mycoplasma pneumoniae M129]
 gi|301633681|gb|ADK87235.1| methyltransferase, HemK family [Mycoplasma pneumoniae FH]
          Length = 453

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 8/132 (6%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           +V   +L ++     F       +   L  V+ A        ++L CG+G  ++ L + F
Sbjct: 76  SVKLGSLTFKTQPGVFI---PRADSLALLKVVKAQNLKTA--VDLCCGSGTLAIALKKRF 130

Query: 232 DR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V   ++   +++ A  N   N V  V+ +          +    +        ++ 
Sbjct: 131 PHLNVYGSDLNPQALQLAAQNARLNMVE-VQWIEADFLAALAQVNTPIDLIITNPPYLNE 189

Query: 290 YRFKTIFVDPPR 301
            +        PR
Sbjct: 190 SQLDQTLNHEPR 201


>gi|158317304|ref|YP_001509812.1| methyltransferase type 11 [Frankia sp. EAN1pec]
 gi|158112709|gb|ABW14906.1| Methyltransferase type 11 [Frankia sp. EAN1pec]
          Length = 226

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 17/111 (15%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +       V        G +L++ CG G  ++ LAR    V A+E++  ++E A 
Sbjct: 45  QPNGAL-------VAEVAALTPGRVLDVGCGEGADAVWLARGGWDVTAIEVSGLALERAG 97

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            +     V     VR    E T+A      F      D+ S ++  +   P
Sbjct: 98  GHARDAGVA----VRWVHAELTEAALPPASF------DLVSAQYPALLRTP 138


>gi|229087818|ref|ZP_04219934.1| Protein hemK [Bacillus cereus Rock3-44]
 gi|228695493|gb|EEL48362.1| Protein hemK [Bacillus cereus Rock3-44]
          Length = 283

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           +L+ V       +  + ++  G+G  S+ LA       V  V+IAK S+E A+ N  A  
Sbjct: 102 VLDRVQRMFGKQELHVADIGTGSGAISITLALENQNLHVYTVDIAKESIEVAQENANALG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             NV                      L        +   +  +PP
Sbjct: 162 A-NVTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|258511684|ref|YP_003185118.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478410|gb|ACV58729.1| Methyltransferase type 11 [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 239

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            + EW L       G  +L++ CG G  +L LA    RV A+++ +  ++  R      H
Sbjct: 21  ALTEWWLEQVPLWAGAAVLDVGCGTGATALSLAERGMRVTALDVRQEMIDRVRDRARQAH 80

Query: 256 VNNVKIVRMSSKEF 269
           +  +  V  S++  
Sbjct: 81  LA-LDTVVGSAEAL 93


>gi|269124815|ref|YP_003298185.1| type 11 methyltransferase [Thermomonospora curvata DSM 43183]
 gi|268309773|gb|ACY96147.1| Methyltransferase type 11 [Thermomonospora curvata DSM 43183]
          Length = 356

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
             + +         +  + ++ CG G  SL LAR F    V  ++    S+E AR + A 
Sbjct: 162 AALPDVAERINGADRPRIADVGCGQGWSSLALARAFPNAWVDGIDADAASIEDARRHAAE 221

Query: 254 NHVNN-VKIVRMSSKEFTQA 272
             ++  ++     + E    
Sbjct: 222 AGLDGRLRFRCEDAAELADG 241


>gi|198435713|ref|XP_002131256.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen
           137 [Ciona intestinalis]
          Length = 787

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQ 271
           +++ +CG+G  ++  A   ++VLA++I    +E A++N A   V + +  +  S  +   
Sbjct: 589 IVDAFCGSGGNAIQFAFTCEKVLAIDIDPVKLENAKHNAAIYGVEDRIDFICGSFFDIAP 648

Query: 272 AMRREREF 279
            ++ +  F
Sbjct: 649 TLKADIVF 656


>gi|149928287|ref|ZP_01916530.1| ubiquinone biosynthesis O-methyltransferase [Limnobacter sp.
           MED105]
 gi|149823016|gb|EDM82258.1| ubiquinone biosynthesis O-methyltransferase [Limnobacter sp.
           MED105]
          Length = 239

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 41/92 (44%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            NS  +P   IN   L W+          +L++ CG G  +  +AR    VL +++A  S
Sbjct: 28  PNSEFRPLHEINPLRLNWIDERVGLKGKRVLDVGCGGGILAESMARRGADVLGIDLADKS 87

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
           ++ A  +     VNNV    +S+++     R 
Sbjct: 88  LKVAELHKLETGVNNVNYRFVSAEQLAAEERG 119


>gi|119477465|ref|ZP_01617656.1| Modification methylase HemK [marine gamma proteobacterium HTCC2143]
 gi|119449391|gb|EAW30630.1| Modification methylase HemK [marine gamma proteobacterium HTCC2143]
          Length = 285

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 30/141 (21%)

Query: 173 VAGRTLIYRQIENSFT----QPNAGI------NVHMLEWVLAAT-KGIQGDLLELYCGNG 221
           + G  + Y   E  F     Q NA           ++E  L         D+L+L  G+G
Sbjct: 64  IVGEPIAYITGERGFWSLDLQVNASTLIPRPETELLVEKTLELMSDAASADILDLGTGSG 123

Query: 222 NFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
             +L LA  +    ++A ++   +V  A  N A   +NNV +                E 
Sbjct: 124 AIALALASEKSGWCIVASDVQPNAVALAESNKAKYSLNNVTV---------------LES 168

Query: 280 NRLKDIDIHSYRFKTIFVDPP 300
           N    I      F  I  +PP
Sbjct: 169 NWFDAIGNQ--CFDVIVSNPP 187


>gi|88607839|ref|YP_505196.1| 3-demethylubiquinone-9 3-methyltransferase [Anaplasma
           phagocytophilum HZ]
 gi|88598902|gb|ABD44372.1| 3-demethylubiquinone-9 3-methyltransferase [Anaplasma
           phagocytophilum HZ]
          Length = 236

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N     ++LE +  A       LL++ CG G     +AR    V  V+  +  +EAAR 
Sbjct: 31  INPLRVQYILENLQEA-TNSGKRLLDIGCGGGLICEAMARLGFSVTGVDPCREGIEAARQ 89

Query: 250 NIAANHVNNVKIVRMSSKEFTQA 272
           + A   ++ ++      + F  +
Sbjct: 90  HAAIEGLD-IEYHFTDIESFIHS 111


>gi|29377041|ref|NP_816195.1| hemK protein [Enterococcus faecalis V583]
 gi|227554051|ref|ZP_03984098.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis HH22]
 gi|257419964|ref|ZP_05596958.1| modification methylase hemK [Enterococcus faecalis T11]
 gi|29344507|gb|AAO82265.1| hemK protein [Enterococcus faecalis V583]
 gi|227176799|gb|EEI57771.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis HH22]
 gi|257161792|gb|EEU91752.1| modification methylase hemK [Enterococcus faecalis T11]
 gi|315574711|gb|EFU86902.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0309B]
 gi|315580977|gb|EFU93168.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0309A]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAVSLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|325915149|ref|ZP_08177475.1| putative methyltransferase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538671|gb|EGD10341.1| putative methyltransferase [Xanthomonas vesicatoria ATCC 35937]
          Length = 224

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 5/130 (3%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F Q        +L   +A        +LEL CG G  SLVL +    V+A +    +   
Sbjct: 49  FGQVWPAGQ--LLAQAMATRPVEGKRILELGCGLGLASLVLRKRGADVVASDHHPLAEVF 106

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
             YN A N +++V   R+    +        +F+ +   D+         +     GL  
Sbjct: 107 LAYNAALNSLDSVPYRRLD---WDAGASNMGQFDMIIASDVLYETRHATMLAKLIPGLAK 163

Query: 307 ATVGMVQAYP 316
            +  +V + P
Sbjct: 164 PSCEIVISDP 173


>gi|312866013|ref|ZP_07726234.1| methyltransferase small domain protein [Streptococcus downei F0415]
 gi|311098417|gb|EFQ56640.1| methyltransferase small domain protein [Streptococcus downei F0415]
          Length = 196

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 32/153 (20%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW-----VLAATKGIQGDLLELYCGNGN 222
           D R+ + G    +      F+         M+++     +          LL+L CG G 
Sbjct: 18  DLRVQLLGEDFHFYTDAGVFS-------KKMIDYGSQALLSVLNFSAGQSLLDLGCGYGP 70

Query: 223 FSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
             + LA+    +V  V+I + ++E A+ N   N V                   E +  +
Sbjct: 71  LGISLAKVQNLKVTMVDINQRALELAQKNAKRNGV-------------------EVDTYQ 111

Query: 282 LKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
               D    +F  I  +PP          +++ 
Sbjct: 112 SNIYDQVKGQFDQIISNPPIRAGKRVVHDILEG 144


>gi|296132761|ref|YP_003640008.1| Methyltransferase type 11 [Thermincola sp. JR]
 gi|296031339|gb|ADG82107.1| Methyltransferase type 11 [Thermincola potens JR]
          Length = 293

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG GN+++ LA+    V A++ A   +E  +       V N+  +         
Sbjct: 82  TVLDIGCGPGNYTIPLAKRAAHVWALDPASNMLEILKERAEKEGVFNITYI--------- 132

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
              R  E   L                 P     +    M++A     Y+S
Sbjct: 133 --NRPWEEVELDKEGWLGKFDLVFASMTPGINDKETLEKMIKASKGYCYLS 181


>gi|296162264|ref|ZP_06845059.1| Methyltransferase type 11 [Burkholderia sp. Ch1-1]
 gi|295887531|gb|EFG67354.1| Methyltransferase type 11 [Burkholderia sp. Ch1-1]
          Length = 250

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           P       +     A        +L++ CG G+ S  +A H   V+A +IA   +     
Sbjct: 22  PTHAAGADLRTLAEAIAATPIATVLDMGCGAGHASFAVAPHAKEVVAYDIAPQMLATVEG 81

Query: 250 NIAANHVNNVKIVRMSSK 267
                 + N++  + +++
Sbjct: 82  AAKERGLANIRTQQGAAE 99


>gi|258541970|ref|YP_003187403.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633048|dbj|BAH99023.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636105|dbj|BAI02074.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639160|dbj|BAI05122.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642214|dbj|BAI08169.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645269|dbj|BAI11217.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648324|dbj|BAI14265.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651377|dbj|BAI17311.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654368|dbj|BAI20295.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 440

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 17/152 (11%)

Query: 184 ENSFT-QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           E +F  Q        +   +L   +G +  + +L    G  +  LA    +V A+E    
Sbjct: 228 EGAFWVQ---DAAATLPARLLNVKEGEK--VADLCAAPGGKTAQLAVTGAQVAAIENNPN 282

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPP 300
            +   + N+A   + NV  ++  +  +      +                    ++V  P
Sbjct: 283 RMARLKENLARLGLGNVITLQADAGTWQPDAPLDAILLDAPCSATGTARRHPDVLWVKRP 342

Query: 301 R------SGLD---DATVGMVQAYPHILYISC 323
           R      +G D   +A   M++    ++Y  C
Sbjct: 343 RDLTTLTAGQDRLLEAAKNMLRPGGRLVYAVC 374


>gi|256004046|ref|ZP_05429031.1| methyltransferase small [Clostridium thermocellum DSM 2360]
 gi|281419117|ref|ZP_06250134.1| Methyltransferase type 11 [Clostridium thermocellum JW20]
 gi|255991969|gb|EEU02066.1| methyltransferase small [Clostridium thermocellum DSM 2360]
 gi|281407266|gb|EFB37527.1| Methyltransferase type 11 [Clostridium thermocellum JW20]
 gi|316941710|gb|ADU75744.1| Methyltransferase type 11 [Clostridium thermocellum DSM 1313]
          Length = 254

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 42/110 (38%), Gaps = 17/110 (15%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV-NNVKI 261
           A       +++L  G G  ++++A       ++ +EI +   E A+ ++  N++ + VKI
Sbjct: 44  ADIKKGDTVIDLGTGTGIIAILIAGKTEAKSIIGLEIQEEMAEMAQRSVKLNNLEDRVKI 103

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           V    K   +                 + +F  +  +PP        + +
Sbjct: 104 VCGDIKNSVEMF--------------GASKFDVVVTNPPYMNQGGGLLNI 139


>gi|228953225|ref|ZP_04115279.1| Methyltransferase type 11 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228806452|gb|EEM53017.1| Methyltransferase type 11 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 261

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 190 PNAGINVH---MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            N+ I+     +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E 
Sbjct: 19  INSKIHAKGLDLQYVVQQVESRHNNRLLDVATGGGHVANMLAPMFEEVVALDLTEQMLEK 78

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQA 272
           A+  I  N   NV  V  +++    A
Sbjct: 79  AKVFIKQNGHENVSFVAGNAENLPFA 104


>gi|168043495|ref|XP_001774220.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674488|gb|EDQ60996.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 480

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQ 271
           +++++ G G F++  A+    V A ++   SV+  + N   N V  ++K   + ++EF +
Sbjct: 228 IVDMFAGIGPFAIPAAQQGCAVYANDLNPTSVKFLKLNSDINKVGESIKAFNLDAREFMR 287

Query: 272 AMRRERE 278
            +  E E
Sbjct: 288 KLVTEEE 294


>gi|150003436|ref|YP_001298180.1| putative protoporphyrinogen oxidase [Bacteroides vulgatus ATCC
           8482]
 gi|254881265|ref|ZP_05253975.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|149931860|gb|ABR38558.1| putative protoporphyrinogen oxidase [Bacteroides vulgatus ATCC
           8482]
 gi|254834058|gb|EET14367.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 278

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 46/106 (43%), Gaps = 19/106 (17%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254
            +++W++   K  +  +L++  G+G  ++ LA++     V++ ++++ +++ A  N   N
Sbjct: 98  ELVDWIIREHKYGRVRILDIGTGSGCIAVSLAKNLEEAEVVSWDVSEKALQVAERNCRRN 157

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            V     V +  ++   A                  RF  I  +PP
Sbjct: 158 GVR----VILEQRDVLLASPA-------------GERFDVIVSNPP 186


>gi|153803071|ref|ZP_01957657.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|262151143|ref|ZP_06028282.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           INDRE 91/1]
 gi|262167012|ref|ZP_06034729.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           RC27]
 gi|124121390|gb|EAY40133.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|262024530|gb|EEY43214.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           RC27]
 gi|262031037|gb|EEY49662.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae
           INDRE 91/1]
          Length = 169

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+           L+L+ G+G      A R  ++V  +E+   + +  + N+ 
Sbjct: 16  VKETLFNWLAQEVPN--ARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQ 73

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 74  SLKAENIELIHTDALAFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 118

Query: 312 VQ-----AYPHILYISC 323
           ++     A   ++YI C
Sbjct: 119 LEQNGWLAPQAMIYIEC 135


>gi|120601608|ref|YP_966008.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Desulfovibrio vulgaris DP4]
 gi|120561837|gb|ABM27581.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Desulfovibrio vulgaris DP4]
          Length = 761

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 20/149 (13%)

Query: 183 IENSFTQPNAGINVHMLEW------VLAATKGIQGDLLELYCGNGNFSLVLARHFDR--V 234
           + ++F    A     + +W      + A        + ++  G+G  S+  A    R  V
Sbjct: 567 MPDTFF---AAEAGLLTKWPVRAVALAALRVNPAATVWDVGAGSGAMSVECAAVASRGSV 623

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            AVE     V     N       N+++V   +     ++           +   S     
Sbjct: 624 WAVERDAARVVCVEENRRRMGAANIEVVHGDAPACLASLPTPDRVFMGGGLGGISADASC 683

Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISC 323
             +              +     ++ ++C
Sbjct: 684 PVL--------HTVCERLAPGGRVV-VAC 703


>gi|145595121|ref|YP_001159418.1| methyltransferase type 11 [Salinispora tropica CNB-440]
 gi|145304458|gb|ABP55040.1| Methyltransferase type 11 [Salinispora tropica CNB-440]
          Length = 271

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNV 259
                      +L++  G G  +L+LA  +   V  V++A P+V AA     +  + + V
Sbjct: 44  AARLALSSGERVLDVASGRGASALLLASEYGCTVTGVDLAGPNVAAATRAARSLGLADRV 103

Query: 260 KIVRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           +  +  ++           +  E  F    D    +     + V   R G+ D   
Sbjct: 104 RFQQGDAERLSADSHTVDVVVCECAFCTFPDKPTAAEELARVLVPGGRLGMADVIA 159


>gi|147920267|ref|YP_685965.1| hypothetical protein RCIX1355 [uncultured methanogenic archaeon
           RC-I]
 gi|110621361|emb|CAJ36639.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 280

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
           +      +  I  I   N T+     +YV  +L VA         + +F           
Sbjct: 73  KRIAGEYREPIIDIIAGNGTETIHKENYVLFKLDVARIMY----SQGNFY---------- 118

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHV 256
            E    +T G    +++++ G G F+L +A      R+ A+EI   S      N+  N V
Sbjct: 119 -ERRRMSTVGKDEYVVDMFAGIGYFTLPMAVHSRPKRIDAIEINPVSFGYLSENVRLNKV 177

Query: 257 NN-VKIVRMSSKEFTQAMRREREF 279
           +  V  V    +E T     +R  
Sbjct: 178 DGIVHPVHGDCREKTPEGVADRVL 201


>gi|78357995|ref|YP_389444.1| hypothetical protein Dde_2955 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220400|gb|ABB39749.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 237

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 197 HMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            + E + AA   + G + L++ CG G  +L  A    RV+ ++  + ++  AR N+  N 
Sbjct: 62  ALAEQIHAARHELNGRVCLDMGCGLGLTALAGAWAGARVIGMDYEEQALRFARRNVRLNG 121

Query: 256 VNN 258
           + +
Sbjct: 122 IPH 124


>gi|262196048|ref|YP_003267257.1| MCP methyltransferase, CheR-type [Haliangium ochraceum DSM 14365]
 gi|262079395|gb|ACY15364.1| MCP methyltransferase, CheR-type [Haliangium ochraceum DSM 14365]
          Length = 207

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 31/67 (46%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA      G +LEL  G G F+  LA   D++LA +I+   V   R  +    + NV   
Sbjct: 32  LARDLPAGGRVLELAAGTGQFTAALAIQADQLLATDISPEMVARLRERVRETQLQNVDCA 91

Query: 263 RMSSKEF 269
            MS+ E 
Sbjct: 92  VMSAYEL 98


>gi|213962836|ref|ZP_03391096.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Capnocytophaga sputigena Capno]
 gi|213954493|gb|EEB65815.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Capnocytophaga sputigena Capno]
          Length = 287

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 68/190 (35%), Gaps = 26/190 (13%)

Query: 80  SLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR 139
           + L   +   +        +       +++  + +   ++      L DD  +     + 
Sbjct: 4   AELKAHIHNCLQPLYPKSEINSFYFILLEHYVNYTTADVLANADTLLTDDIKQSIQQAIT 63

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
           +   A+  Q  L     +T+   +R +VDE + +                        ++
Sbjct: 64  ELQTAKPIQYIL----GETEFFSNRFFVDENVLIPRPE-----------------TEELV 102

Query: 200 EWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANH 255
           +WVL           +L++  G+G   + LA+   +  V A++++  ++  A+ N   N 
Sbjct: 103 DWVLQTYPDKNYPLHILDIGTGSGCIPISLAKALPKSVVTAIDVSPKAITVAQRNADRNG 162

Query: 256 VNNVKIVRMS 265
           V  ++ ++  
Sbjct: 163 VK-IQFLQCD 171


>gi|154488912|ref|ZP_02029761.1| hypothetical protein BIFADO_02221 [Bifidobacterium adolescentis
           L2-32]
 gi|154083049|gb|EDN82094.1| hypothetical protein BIFADO_02221 [Bifidobacterium adolescentis
           L2-32]
          Length = 214

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 24/119 (20%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVL---ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A     +G  L+L CG G  +L L   +   D + A+++ + ++E  R N   N + N+ 
Sbjct: 66  APEPPEEGTFLDLGCGWGPIALTLGFESPKAD-IWALDVNERALELTRRNAELNGMGNIH 124

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
            V   +++    +                  F  I+ +PP R G +     ++   P +
Sbjct: 125 AVT--AEQVPAVL-----------------TFDLIWSNPPIRVGKEALHELLMTWLPRL 164


>gi|163852522|ref|YP_001640565.1| methyltransferase small [Methylobacterium extorquens PA1]
 gi|163664127|gb|ABY31494.1| methyltransferase small [Methylobacterium extorquens PA1]
          Length = 250

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARY 249
           AG +  +L  +LA   G    L +L    G   L +AR     RV+ VE     V  AR 
Sbjct: 25  AGTDAVLLARLLAPAPGAT--LYDLGAATGAVGLAVARLSEAGRVVLVERDTDLVALARE 82

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N +AN ++  ++  + +       +R           +       +  +PP
Sbjct: 83  NASANGLDG-RVAVIEADLLAPGAQRR-------AAGLEPDSADIVLTNPP 125


>gi|52842547|ref|YP_096346.1| protein methyltransferase HemK [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629658|gb|AAU28399.1| protein methyltransferase HemK [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 287

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
              ++E  L      +   +L+L  G+G  +L LA+      + A + +K ++E ARYN 
Sbjct: 97  TERLVELALELIPDKENVSVLDLGTGSGAIALALAKERPLWHIDACDFSKEALELARYNA 156

Query: 252 AANHVNNVKIVR 263
               +NN+    
Sbjct: 157 KTLGLNNINFCH 168


>gi|88809202|ref|ZP_01124711.1| possible menaquinone biosynthesis methyltransferase [Synechococcus
           sp. WH 7805]
 gi|88787144|gb|EAR18302.1| possible menaquinone biosynthesis methyltransferase [Synechococcus
           sp. WH 7805]
          Length = 233

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 10/114 (8%)

Query: 201 WVLAATKGIQGDL-LELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHV 256
            +L      +G++ L+L CG G+ +L LAR      +V+ V+ A+  ++ AR   A    
Sbjct: 38  QLLLTLAPQRGEVWLDLCCGTGDLALALARRVRPGGQVVGVDAAEAPLDVARRRAAREPW 97

Query: 257 NNVKIVRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             +   +  +            +        L D        K +     R+GL
Sbjct: 98  LPLDFQQGDALALDCDTASVDGVVMAYGLRNLADPAAGLREVKRVLRPGGRAGL 151


>gi|323498381|ref|ZP_08103381.1| ribosomal RNA large subunit methyltransferase I [Vibrio sinaloensis
           DSM 21326]
 gi|323316623|gb|EGA69634.1| ribosomal RNA large subunit methyltransferase I [Vibrio sinaloensis
           DSM 21326]
          Length = 397

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 30/172 (17%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E    +   LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 163 KEGLKEVTGVLHGEEPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 210

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +            ++L  +   G F L  L     RV+  ++++P+++ A+YN
Sbjct: 211 RQQAIKYV---------KNKEVLNCFSYTGGFGLYALKGEAKRVINADVSQPALDTAKYN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
              N             +          F  L++      +F  + +DPP+ 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKF 305


>gi|313901576|ref|ZP_07835018.1| ribosomal L11 methyltransferase [Thermaerobacter subterraneus DSM
           13965]
 gi|313468165|gb|EFR63637.1| ribosomal L11 methyltransferase [Thermaerobacter subterraneus DSM
           13965]
          Length = 354

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           + G +L++  G+G  ++  AR    RVLA++I   +V  A  N AAN V         ++
Sbjct: 186 LGGTVLDVGTGSGILAIAAARLGAPRVLAIDIDPVAVRVAGENAAANGV---------AE 236

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
               A        ++       +    + V
Sbjct: 237 RIGLACATPAGLRQVPPAGWAGHLPAALTV 266


>gi|268323948|emb|CBH37536.1| conserved hypothetical protein, methyltransferase family
           [uncultured archaeon]
          Length = 274

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 34/76 (44%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +        ++L++  G G  ++ LA+   +V A+E +K  +     +  A  + N++ 
Sbjct: 55  AIKGIIKPDFEVLDIGAGPGTLAIPLAKLVKKVTALEPSKGMINVLEESAVAEGIGNIET 114

Query: 262 VRMSSKEFTQAMRRER 277
           V  + +E   A   ER
Sbjct: 115 VNETWQEVDDAEIGER 130


>gi|258544632|ref|ZP_05704866.1| protein methyltransferase HemK [Cardiobacterium hominis ATCC 15826]
 gi|258520140|gb|EEV88999.1| protein methyltransferase HemK [Cardiobacterium hominis ATCC 15826]
          Length = 276

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 23/189 (12%)

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           I+   L+ A ++    L   LHA +    L+G          + +    L V+  TLI R
Sbjct: 41  IHDPELEPAQQQALDALAARLHAGEPLAYLLGH---------QPFCGLDLKVSRATLIPR 91

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVL--ARHFDRVLAVE 238
                           ++E  L   + +    +++L  G+G  +L +  AR   R+ A +
Sbjct: 92  SDS-----------EILVERALHHLRDLHAPTVIDLGTGSGALALAIATARPDARITATD 140

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            +  ++  A+ N  A+ + N+  ++        A   +   +    I  +      +  +
Sbjct: 141 QSAEALAIAQENAHAHRLTNLTFLQADWLAPFAADCADLILSNPPYIAANDPHLAALTHE 200

Query: 299 PPRSGLDDA 307
           PP + +  A
Sbjct: 201 PPSALIAAA 209


>gi|258515989|ref|YP_003192211.1| O-methyltransferase family 3 [Desulfotomaculum acetoxidans DSM 771]
 gi|257779694|gb|ACV63588.1| O-methyltransferase family 3 [Desulfotomaculum acetoxidans DSM 771]
          Length = 227

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 12/117 (10%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           DE L+   +T   + +          +   +L W+  + K     +LE+  G G  +L L
Sbjct: 21  DELLSFMEKTAAEKVVPI----VEPEVAQ-LLYWLALSHK--CSRVLEIGTGIGYSTLWL 73

Query: 228 ARHFDRVLA----VEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREF 279
           A+    V      +EI KP  + A  N     +  N++++   ++E    +    + 
Sbjct: 74  AKAVIPVGGKITTIEINKPRYDTACENFRRAGLVENIELIFGDAREILFDLSGPYDL 130


>gi|193075951|gb|ABO10531.2| 3-demethylubiquinone-9 3-methyltransferase and
           2-octaprenyl-6-hydroxy phenol methylase [Acinetobacter
           baumannii ATCC 17978]
          Length = 199

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 201 WVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +    +V N+
Sbjct: 3   WIDERAGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLHAQQENVQNI 62

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +  ++  +E  Q    + +     ++  H     +I 
Sbjct: 63  EYRQIPVEELAQEQAGQYDVVTCMEMMEHVPDPASIV 99


>gi|192289644|ref|YP_001990249.1| methyltransferase small [Rhodopseudomonas palustris TIE-1]
 gi|192283393|gb|ACE99773.1| methyltransferase small [Rhodopseudomonas palustris TIE-1]
          Length = 259

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 6/120 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHV--- 256
             +        ++E   G G   L +AR  + +  + VEI       A  N   N +   
Sbjct: 41  AASTRAKAGDRVVEFGSGVGAAGLAVARRVEGIDPVLVEIDPSLAALACDNARLNGLVAE 100

Query: 257 NNVKIVRMSSKEFTQAMRREREFN-RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                V   ++ F  A       +  L +   H         DP R     AT   ++A+
Sbjct: 101 TVCLDVTGPAEAFAAAGLGPDTADAVLMNPPFHDAARHRGSPDPARQSAHLATPTTLEAW 160


>gi|125974592|ref|YP_001038502.1| methyltransferase small [Clostridium thermocellum ATCC 27405]
 gi|125714817|gb|ABN53309.1| methyltransferase small [Clostridium thermocellum ATCC 27405]
          Length = 251

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 42/110 (38%), Gaps = 17/110 (15%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV-NNVKI 261
           A       +++L  G G  ++++A       ++ +EI +   E A+ ++  N++ + VKI
Sbjct: 41  ADIKKGDTVIDLGTGTGIIAILIAGKTEAKSIIGLEIQEEMAEMAQRSVKLNNLEDRVKI 100

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           V    K   +                 + +F  +  +PP        + +
Sbjct: 101 VCGDIKNSVEMF--------------GASKFDVVVTNPPYMNQGGGLLNI 136


>gi|119945324|ref|YP_943004.1| modification methylase, HemK family protein [Psychromonas
           ingrahamii 37]
 gi|119863928|gb|ABM03405.1| modification methylase, HemK family protein [Psychromonas
           ingrahamii 37]
          Length = 279

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 21/119 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G+G   L LA        L V++ + +V+ A  N  
Sbjct: 95  TELLVEAALDYCSA-DARILDLGTGSGAIILALASELPDAYCLGVDVNESAVQLAIENGK 153

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
              +NNV   + +                    D  +  F  +  +PP    +D  + +
Sbjct: 154 NLKLNNVHFQQSN------------------WFDNINGLFDVVVSNPPYIEKNDHHLKL 194


>gi|29832950|ref|NP_827584.1| precorrin-6Y C5,15-methyltransferase [Streptomyces avermitilis
           MA-4680]
 gi|29610071|dbj|BAC74119.1| putative precorrin-6Y C5,15-methyltransferase [Streptomyces
           avermitilis MA-4680]
          Length = 416

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 197 HMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +    LA      GD + ++  G+G+ ++  AR    V AVE     VE    N  A+ 
Sbjct: 243 EVRALALARLGPRLGDLVWDVGAGSGSVAVECARLGAAVTAVEKTLDGVERIHANARAHG 302

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           V+ V +V  ++ +   A+           I         +     R       V M    
Sbjct: 303 VD-VHVVHGAAPDALTALPDPDAVF----IGGGGRELPALVTACARRARRTVVVAMAALD 357

Query: 316 P 316
            
Sbjct: 358 R 358


>gi|73974594|ref|XP_851753.1| PREDICTED: similar to homolog of yeast tRNA methyltransferase
           [Canis familiaris]
          Length = 439

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 86/273 (31%), Gaps = 39/273 (14%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHY----RMRA---------EFHIWHDGDD 57
           +QQL ++  RL + M    V    +  + P  +    R R          +         
Sbjct: 30  KQQLLDRQHRLEK-MPDGTVALPVLGEALPERHLQELRNRVAPGSTCRVTQLRDPVPSKK 88

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQA 117
                  Q+          +  S  +    +   A +  +  L     +   L   S+  
Sbjct: 89  AQGGSPAQR--------LRLEVSRWVEGRGVTWSADLEAD--LPRSWQRHGNLLLLSEDC 138

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-ICLDRDYVDERLTVAGR 176
                +  L  + W+  A  L     A++ ++   G       + L  D   E +    R
Sbjct: 139 FQAKQWENLEPELWKTVASALGVHRVAKRGRVSPDGTRTPAVTLLLGDDGWVEHVDNGIR 198

Query: 177 TLIYRQIE--NSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR 233
              +       SF         ++ E +  A+    G++L +LY G G F+L    H   
Sbjct: 199 -YKFDVTRCMFSF--------GNITEKLRVASLPCAGEVLVDLYAGIGYFTLPFLVHAGA 249

Query: 234 --VLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             V A E    +V A R N+  N V +   +  
Sbjct: 250 AFVHACEWNPHAVVALRKNLDINGVAHRCQIHF 282


>gi|18978045|ref|NP_579402.1| protoporphyrinogen oxidase [Pyrococcus furiosus DSM 3638]
 gi|18893832|gb|AAL81797.1| protoporphyrinogen oxidase [Pyrococcus furiosus DSM 3638]
          Length = 201

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           L +     +Y   E+SF          +L  VL      +  +L++  G+G  +L+ A+ 
Sbjct: 8   LKIEISEEVYEPAEDSF----------LLAEVLLKEVRDEDIVLDMGTGSGILALLAAKK 57

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              V+ V+I + +V+ A  N   N V NV  V+    E
Sbjct: 58  AKFVVGVDINERAVDIAWKNAVNNDVKNVIFVKSDLFE 95


>gi|37521087|ref|NP_924464.1| hypothetical protein glr1518 [Gloeobacter violaceus PCC 7421]
 gi|35212083|dbj|BAC89459.1| glr1518 [Gloeobacter violaceus PCC 7421]
          Length = 440

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 208 GIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G    +L+  CG+G  SL LA+     R++ +++++ SV  AR  +A +   + +     
Sbjct: 55  GAGKRILDAGCGSGFTSLALAQANPGARIVGIDLSERSVAVARERLAFHGFKSAEF---- 110

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                 A+  ER     +D D+       +    P  G+  A +    A   IL
Sbjct: 111 -----HALPIERVGELGEDFDL--INCDEVLYLLPDPGVGLAALTGALAPDGIL 157


>gi|319891440|ref|YP_004148315.1| Predicted O-methyltransferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161136|gb|ADV04679.1| Predicted O-methyltransferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323465390|gb|ADX77543.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
          Length = 241

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 32/154 (20%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVL-AVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
           +  +L++  GNG   L+L+   + V+  VEI    V  A  ++  NH+ + + +V M   
Sbjct: 43  RDRILDMCAGNGVIPLLLSDKGNNVITGVEIQPQLVNMAVRSVQYNHLEDRITMVEMDIN 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP---HILYISCN 324
              QA                  +F  I  +PP    +      ++A+    H +Y  C 
Sbjct: 103 ALIQAY--------------SPAQFDLITCNPPYFKANQTNQHQLEAHKIARHEIY--C- 145

Query: 325 PDSLCRDLS----ILSTTHTIERL----ALFDQF 350
             +L   L     +L     +  +     + D F
Sbjct: 146 --TLDDCLRVSNHLLKEGGRVVMVHRAERMLDLF 177


>gi|312172002|emb|CBX80259.1| UPF0064 protein yccW [Erwinia amylovora ATCC BAA-2158]
          Length = 396

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L  +   V++V+ ++ +++ AR N+  N + NV
Sbjct: 212 RLATRRYAEGRRVLNCFSYTGGFAVSALMGNCTEVISVDTSQTALDVARQNVELNGL-NV 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
              +    +  + +RR R+            +F  I +DPP+   +    +G  + Y  I
Sbjct: 271 SKAQFLRDDVFKLLRRYRD---------EGEKFDLIIMDPPKFVENKNQLMGACRGYKDI 321


>gi|302037420|ref|YP_003797742.1| precorrin-6Y C(5,15)-methyltransferase [Candidatus Nitrospira
           defluvii]
 gi|300605484|emb|CBK41817.1| Precorrin-6Y C(5,15)-methyltransferase (decarboxylating)
           [Candidatus Nitrospira defluvii]
          Length = 418

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL---VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           + A        L ++  G+G+ ++    LA    RV A+E+    VE  R N+ A+ V+N
Sbjct: 249 LAALQIRPDSVLWDIGAGSGSVAIEAACLAPE-GRVYAIEVDPEGVEICRDNVRAHAVDN 307

Query: 259 VKIVRMSSKEFTQAM 273
           V++V   + E    +
Sbjct: 308 VQVVAGKAPEALAGL 322


>gi|297154263|gb|ADI03975.1| hypothetical protein SBI_00854 [Streptomyces bingchenggensis BCW-1]
          Length = 219

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 30/156 (19%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            I G++LEL CG G ++  LA     V AV+ A   +  AR   A+   +NV+ +     
Sbjct: 44  PIAGEVLELACGTGQWTPRLAARARSVTAVDAAAEVLALARARTAS---SNVQFLEADLF 100

Query: 268 E----------FTQAMRREREFNRLKDID------IHSYRFKTIFVDPPRSGLDDATVGM 311
           E          F           RL +        +          D P +  ++  +  
Sbjct: 101 EWRPPRRYDTVFFAFWLSHVPPRRLPEFWNTVAAALAPGGKAIFIDDGPAAAAEEDILAN 160

Query: 312 VQAYP-----------HILYISCNPDSLCRDLSILS 336
             A              I+ +  +P +L  DL+ L 
Sbjct: 161 QPAPAALRRLDDGSQYRIVKVFHDPRTLTDDLTALG 196


>gi|302536944|ref|ZP_07289286.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. C]
 gi|302445839|gb|EFL17655.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. C]
          Length = 281

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 34/136 (25%)

Query: 181 RQIENSFT-----QPNAGI------NVHMLEWVL---AATKGIQGDLLELYCGNGNFSLV 226
                +F      Q   G+         +++W +    A   ++  +++L  G+G  +L 
Sbjct: 69  HITGRAFFRYLELQVGPGVFVPRPETESVVDWAIHAVRAMDVVEPLIVDLCTGSGAIALA 128

Query: 227 LARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           +A+     RV AVE+++ ++   R N      + V + +  +               L  
Sbjct: 129 MAQEVPRSRVHAVELSEDALRWTRKNAEG---SRVTVHQGDA---------------LTA 170

Query: 285 IDIHSYRFKTIFVDPP 300
           +     +   +  +PP
Sbjct: 171 LPELDGQVDLVISNPP 186


>gi|157822011|ref|NP_001101374.1| trimethylguanosine synthase [Rattus norvegicus]
 gi|143587061|sp|P85107|TGS1_RAT RecName: Full=Trimethylguanosine synthase; AltName: Full=Nuclear
           receptor coactivator 6-interacting protein; AltName:
           Full=PRIP-interacting protein with methyltransferase
           motif; Short=PIMT; Short=PIPMT
 gi|149060992|gb|EDM11602.1| nuclear receptor coactivator 6 interacting protein (predicted)
           [Rattus norvegicus]
          Length = 850

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    ++ AR N     V + ++ +         
Sbjct: 688 IVDAFCGVGGNTIQFALTGKRVIAIDIDPVKIDLARNNAEVYGVADKIEFICGDFLLLAP 747

Query: 272 AMRREREF 279
            ++ +  F
Sbjct: 748 CLKADVVF 755


>gi|134046087|ref|YP_001097573.1| methyltransferase small [Methanococcus maripaludis C5]
 gi|132663712|gb|ABO35358.1| 16S rRNA m(2)G 1207 methyltransferase [Methanococcus maripaludis
           C5]
          Length = 200

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 19/120 (15%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNV 259
           V         ++L++ CG G   + +A   + V   ++   SV   R N+  N     N+
Sbjct: 48  VEELELLKSDNVLDVGCGYGVIGISIADEVNSVTMTDVNNRSVSLTRKNVKLNGKSEKNI 107

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           ++ +    E                  + + ++  I  +PP     +    ++     +L
Sbjct: 108 EVFQGDLYE-----------------KVKNKKYSVIISNPPIKAGKELIHKIISKGHELL 150


>gi|110597402|ref|ZP_01385689.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
 gi|110340946|gb|EAT59417.1| conserved hypothetical protein [Chlorobium ferrooxidans DSM 13031]
          Length = 408

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 45/114 (39%), Gaps = 14/114 (12%)

Query: 207 KGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                ++L+++  +G F+L  L       + V+ ++ +++ A +N   N+ +   +V   
Sbjct: 231 FAKDAEVLDVFTNDGGFALNALYGGAKSAILVDASQEALQRAEHNAKLNNFSEYSLVAAD 290

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
           + +  + M   +E             F  + +DPP          G ++ Y  +
Sbjct: 291 AFDMLEQMGEAKE------------SFDLVILDPPSFTKSRKNLPGALKGYKRL 332


>gi|325002069|ref|ZP_08123181.1| hypothetical protein PseP1_25056 [Pseudonocardia sp. P1]
          Length = 409

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           AA    +  L +L CG G   + LA     V  V++    +  A  N AA H  +V+ VR
Sbjct: 106 AARYAGRDRLTDLCCGIGGDLVALAAAGHEVTGVDLDPVHLWMAGRNAAA-HDRSVRTVR 164

Query: 264 MSSKE 268
              ++
Sbjct: 165 GDVRD 169


>gi|320533776|ref|ZP_08034375.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320134009|gb|EFW26358.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 267

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT--- 270
           ++L CG G  +L L RH + V+A +I+  ++    +N A   V+    +   ++      
Sbjct: 1   MDLGCGCGIQTLYLLRHAEYVVATDISARALAFTAFNAALAGVSVAGALGAGTESVAGSE 60

Query: 271 -----QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                 A R E     L +  +   RF  I  +PP      A    
Sbjct: 61  SGSDSGAGRLELLRGSLLEP-VAGRRFDLIVSNPPFVITPPAVREA 105


>gi|316976160|gb|EFV59496.1| 3-demethylubiquinone-9 3-methyltransferase [Trichinella spiralis]
          Length = 346

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFT 270
            +L++ CG G  S  LAR    V+ ++     +  A+ +     +  N+K      +   
Sbjct: 162 KILDVGCGAGIMSESLARLGATVVGIDANSEGIALAKEHQRLAGLGENLKYFVCDVESVA 221

Query: 271 QA 272
           Q+
Sbjct: 222 QS 223


>gi|260220046|emb|CBA27192.1| Ribosomal protein L11 methyltransferase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 292

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+     G  G +L+  CG+G  ++  A+     V+AV+I + +V++   N  ANHV 
Sbjct: 154 LRWIAR--NGGSGRVLDYGCGSGILAIGAAKFGATEVIAVDIDQAAVDSTVLNAEANHVT 211

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLK 283
            V  +  +++     +        LK
Sbjct: 212 LVSGLPEAAQGVFDVVLANILATPLK 237


>gi|28198536|ref|NP_778850.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
           [Xylella fastidiosa Temecula1]
 gi|182681216|ref|YP_001829376.1| methyltransferase type 11 [Xylella fastidiosa M23]
 gi|28056620|gb|AAO28499.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
           [Xylella fastidiosa Temecula1]
 gi|182631326|gb|ACB92102.1| Methyltransferase type 11 [Xylella fastidiosa M23]
 gi|307579662|gb|ADN63631.1| methyltransferase type 11 [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 303

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +L   +AA   +   L++L CG G  +   A+   RV+A++ A   V  A     A  + 
Sbjct: 66  LLRKAVAAELPVGARLIDLGCGTGLDAQAFAQRGYRVMAIDGASTMVAPAHQRAQAVGLE 125


>gi|116754726|ref|YP_843844.1| methyltransferase type 11 [Methanosaeta thermophila PT]
 gi|116666177|gb|ABK15204.1| Methyltransferase type 11 [Methanosaeta thermophila PT]
          Length = 262

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF----DRVLAVEIAKPSVEAARYNIAANHVN 257
           V  A+      +L++  G G F   LA         V+ V++    V+ AR N       
Sbjct: 69  VAIASLKRGEYVLDMGSGAG-FDCFLAARAVGPEGMVIGVDMTSEMVDRARENARKGGYR 127

Query: 258 NVKIVRMSSKEFTQA 272
           NV   +   +    A
Sbjct: 128 NVDFRQGELENLPVA 142


>gi|271970460|ref|YP_003344656.1| methylase of polypeptide chain release factors-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270513635|gb|ACZ91913.1| Methylase of polypeptide chain release factors- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 480

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 28/130 (21%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+L  G G   L LA     ++A ++   ++E AR + A + +  V   + S  +   
Sbjct: 143 RALDLGTGCGVQVLHLADRAREIVATDVNPRALELARLSWALSGIKGVDARQGSLFD--- 199

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY--ISCNPDSLC 329
                          +   RF  I  +PP          ++       Y       D  C
Sbjct: 200 --------------PVADDRFDLIVSNPPF---------VISPGGRFTYRESGFEADGFC 236

Query: 330 RDLSILSTTH 339
           RDL  L+   
Sbjct: 237 RDLVRLAPRF 246


>gi|194476802|ref|YP_002048981.1| Mg-protoporphyrin IX methyl transferase [Paulinella chromatophora]
 gi|171191809|gb|ACB42771.1| Mg-protoporphyrin IX methyl transferase [Paulinella chromatophora]
          Length = 245

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 197 HMLEWVLAATKGIQGD----LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNI 251
            M++ VL   +   G     + +  CG G+ +L LA+     + A +I++  VE  +   
Sbjct: 60  QMVDQVLIWLQDRGGTENESVCDAGCGVGSLTLPLAQLGAKSITASDISEAMVEEVQRRA 119

Query: 252 AANHVNNVKIVRMSSKEF 269
            A  ++ V  V  ++ + 
Sbjct: 120 RAADID-VSRVNFNASDL 136


>gi|110611756|dbj|BAE98167.1| putative SAM-dependent methyltransferase [Streptomyces lasaliensis]
          Length = 224

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
              L     IQG +L+  CG G  +L LA     V  ++++  ++  AR    A  +  V
Sbjct: 30  YVALEKAGLIQGAVLDAGCGTGEDALHLAGLGYAVTGLDLSPTAISVARDKADARGLGAV 89

Query: 260 KIVRMSSKEFT 270
                 + + T
Sbjct: 90  -FEVADALDLT 99


>gi|326565377|gb|EGE15555.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           12P80B1]
          Length = 310

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W LAA +     +++  CG+G   +  L     +VLAV+I   +V A R N A N V+
Sbjct: 153 LDW-LAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVD 211

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +              +  E + +R ++  +       I   P
Sbjct: 212 DR---------LLAFLPAEFDAHRTQNPQLADVITANILAKP 244


>gi|326504188|dbj|BAJ90926.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 690

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            G L++ + G G  ++  A   + V AV+I    ++ A++N     V +++  +      
Sbjct: 518 AGILIDCFTGVGGNTIQFAAKCNHVFAVDIDPQKIDCAQHNATVYGVNDHIDFIIGDFIR 577

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKT 294
               ++ E  F           +   
Sbjct: 578 IAPHLKGETVFMSPPWGGPDYAKVDV 603


>gi|323699008|ref|ZP_08110920.1| Methyltransferase type 11 [Desulfovibrio sp. ND132]
 gi|323458940|gb|EGB14805.1| Methyltransferase type 11 [Desulfovibrio desulfuricans ND132]
          Length = 257

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 169 ERLTVAGRTL-IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           E      RT   + + E+     N    V M E            +L++ CG+G +++ +
Sbjct: 13  EYWNEHARTFPRFEEGED-----NYEAGV-MREIRAHGVDFRGATVLDVGCGSGMYTIRI 66

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           AR   RV A++++   ++  R +  A  ++N+  VR    +F
Sbjct: 67  AREARRVTALDVSDVMLDILRADAEALKLDNIDYVRSEWMDF 108


>gi|149910033|ref|ZP_01898681.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36]
 gi|149806901|gb|EDM66862.1| ribosomal protein L11 methyltransferase [Moritella sp. PE36]
          Length = 293

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L         +++  CG+G  ++  L     RV+ V+I   ++ A+R N   N V 
Sbjct: 149 LEW-LDGQDLTGKTVVDFGCGSGILAIAALKLGAKRVIGVDIDPQAILASRDNAERNGVA 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|70732475|ref|YP_262237.1| hemK protein [Pseudomonas fluorescens Pf-5]
 gi|68346774|gb|AAY94380.1| hemK protein [Pseudomonas fluorescens Pf-5]
          Length = 276

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 19/96 (19%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                 +L+L  G+G  +L LA  R   +V AV+    +V  A  N     ++NV +   
Sbjct: 106 PATPATVLDLGTGSGAIALALASERPAWQVTAVDRVLEAVALAERNRQRLQLDNVSV--- 162

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                          +      I S RF  I  +PP
Sbjct: 163 --------------LSSHWFSSIESRRFDLIISNPP 184


>gi|57239140|ref|YP_180276.1| 3-demethylubiquinone-9 3-methyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579091|ref|YP_197303.1| 3-demethylubiquinone-9 3-methyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
 gi|57161219|emb|CAH58134.1| putative 3-demethylubiquinone-9 3-methyltransferase [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417717|emb|CAI26921.1| 3-demethylubiquinone-9 3-methyltransferase [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 241

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 56/142 (39%), Gaps = 15/142 (10%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +  V+         +L++ CG G  S  +AR   RV  ++ +K ++  A+ +   + +
Sbjct: 43  NYINKVMPNVDFKSLSVLDVGCGGGLLSESMARLNMRVCGIDASKETINVAQKHALVHGI 102

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           +N+    M+ ++    ++ + +   + ++  H                    +  +    
Sbjct: 103 HNISYHCMNIEDLVN-IQEKYDIITVMEVVEHVDNLPLFINS----------ISSLLNDN 151

Query: 317 HILYISCNPDSLCRDLSILSTT 338
            I+++S    +L R++  L   
Sbjct: 152 GIIFLS----TLNRNIKSLLCG 169


>gi|71004764|ref|XP_757048.1| hypothetical protein UM00901.1 [Ustilago maydis 521]
 gi|46096852|gb|EAK82085.1| hypothetical protein UM00901.1 [Ustilago maydis 521]
          Length = 305

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 20/147 (13%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           E S+      +    + + +A      G +++L+ G G  ++  A    +V+AVE+ +  
Sbjct: 92  EQSWY----SVTPESVAFRIAKRCATDGVIVDLFTGAGGNAIQFAMTCAKVIAVELDELK 147

Query: 244 VEAARYNIAANHV-NNVKIVRMSSKEFTQAMRRERE-------------FNRLKDIDIHS 289
           +  A++N     V + +  +   S +    +   R+             +N +K  D+ +
Sbjct: 148 LNMAQWNAEVYGVKDRILFIHGDSLQLLDTLLTWRKQSPSISHQQDEQVWNGIKSSDLDA 207

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYP 316
                +F+ PP  G+D A        P
Sbjct: 208 VH--AVFLSPPWGGIDYAQPTTTDQNP 232


>gi|330815485|ref|YP_004359190.1| Ribosomal protein L11 methyltransferase [Burkholderia gladioli
           BSR3]
 gi|327367878|gb|AEA59234.1| Ribosomal protein L11 methyltransferase [Burkholderia gladioli
           BSR3]
          Length = 300

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+     RV+ ++I   +VE+AR+N   N  
Sbjct: 156 MEWLEQTVEAGQS-VLDYGCGSGILAI-LAKKCGAGRVIGIDIDPQAVESARHNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|319651629|ref|ZP_08005756.1| hypothetical protein HMPREF1013_02368 [Bacillus sp. 2_A_57_CT2]
 gi|317396696|gb|EFV77407.1| hypothetical protein HMPREF1013_02368 [Bacillus sp. 2_A_57_CT2]
          Length = 249

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            ++    A        LL+L CG G  S+ L++    V  V+I++  +  A+     N +
Sbjct: 24  KLVNEKHAEFNVPGKKLLDLACGTGQLSIRLSKQGYDVTGVDISEDMLAVAQAKAEQNGL 83

Query: 257 NNVKIVRMSSKEF 269
             +     +  E 
Sbjct: 84  Q-IPFYLQNMAEL 95


>gi|296395395|ref|YP_003660279.1| type 11 methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296182542|gb|ADG99448.1| Methyltransferase type 11 [Segniliparus rotundus DSM 44985]
          Length = 237

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 196 VHMLEWVLAATKGIQGDL--LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
             + +  + +  G +  L  L+  CG G  S  LA     V+ V+ A   VEAAR   A 
Sbjct: 26  TELTDVAVLSMVGAREGLRALDAGCGEGYLSRALAERGAHVVGVDSAAELVEAARLEAAR 85

Query: 254 NHVNNVKIVR 263
             ++    V 
Sbjct: 86  LRLDVEHRVA 95


>gi|292487880|ref|YP_003530755.1| hypothetical protein EAMY_1397 [Erwinia amylovora CFBP1430]
 gi|292899103|ref|YP_003538472.1| hypothetical protein EAM_1387 [Erwinia amylovora ATCC 49946]
 gi|291198951|emb|CBJ46062.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
 gi|291553302|emb|CBA20347.1| UPF0064 protein yccW [Erwinia amylovora CFBP1430]
          Length = 396

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L  +   V++V+ ++ +++ AR N+  N + NV
Sbjct: 212 RLATRRYAEGRRVLNCFSYTGGFAVSALMGNCTEVISVDTSQTALDVARQNVELNGL-NV 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
              +    +  + +RR R+            +F  I +DPP+   +    +G  + Y  I
Sbjct: 271 SKAQFLRDDVFKLLRRYRD---------EGEKFDLIIMDPPKFVENKNQLMGACRGYKDI 321


>gi|221126212|ref|XP_002159378.1| PREDICTED: similar to tRNA wybutosine-synthesizing protein 2
           homolog, partial [Hydra magnipapillata]
          Length = 490

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 19/157 (12%)

Query: 118 IVTLIYHRLLDDAW----RECAIRLRDALHARKYQIQLIGRANK-----TKICLDRDYVD 168
           ++    H      W    ++  IR+    +A +  I+     +        + L  D   
Sbjct: 206 LILFPDHSFSLKIWEIFPQDFWIRVAKVFNAERIAIKSKIIGDGFRTPNVILRLGNDSWV 265

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV- 226
           E +    +   Y    N F++ N      + E +  ++   + +++ +L+ G G F+L  
Sbjct: 266 EHIDNGIK-YAYDVRLNMFSKGN------ITEKLRISSFNCENEVIVDLFAGIGYFTLPY 318

Query: 227 -LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            +      V A E    ++ A + N+  N VN+  IV
Sbjct: 319 LVKARAHTVYACEWNPNAIIALKRNLEINGVNDRCIV 355


>gi|109086422|ref|XP_001084320.1| PREDICTED: trimethylguanosine synthase isoform 2 [Macaca mulatta]
          Length = 855

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 696 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAA 755

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            ++ +  F            + T      R+ +      + +    I
Sbjct: 756 CLKADVVF---LSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKI 799


>gi|56475930|ref|YP_157519.1| 3-demethylubiquinone-9 3-methyltransferase [Aromatoleum aromaticum
           EbN1]
 gi|81358433|sp|Q5P7U3|UBIG_AZOSE RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|56311973|emb|CAI06618.1| 3-demethylubiquinone-9 3-methyltransferase [Aromatoleum aromaticum
           EbN1]
          Length = 234

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L+W+          +L++ CG G  S  +A     V  +++++ ++  AR ++
Sbjct: 31  HEINPLRLDWIDRNAGLAGKRVLDIGCGGGILSESMAAAGAHVTGIDLSEKALGVARLHL 90

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
             +    V     S++EF      E +     ++  H     +   
Sbjct: 91  FESG-QKVDYHHASAEEFAAQHAGEFDIVTCMEMLEHVPDPASTVA 135


>gi|86151443|ref|ZP_01069658.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315123841|ref|YP_004065845.1| hypothetical protein ICDCCJ07001_239 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841790|gb|EAQ59037.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315017563|gb|ADT65656.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 239

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 34/63 (53%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 37  QNKSIIDIGCGTGVWTLHLAKEAKEILALDSANAMLEILQEDAKKLNLNNIKCKNLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|314969926|gb|EFT14024.1| methyltransferase small domain protein [Propionibacterium acnes
           HL037PA1]
          Length = 206

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 20/112 (17%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  +  LAR      ++AV++   +++    N  A  V + ++  
Sbjct: 63  PPPSDGTFLDLGCGYGPIACALARACPGSHIVAVDVNDLAIDLTTRNAKALRVGD-RVHA 121

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
              +E    +R                 F  I+ +PP      A   ++  +
Sbjct: 122 CRPEEVDPDLR-----------------FDEIWSNPPIRVGKAALHEILTTW 156


>gi|294494993|ref|YP_003541486.1| tRNA methyltransferase complex GCD14 subunit [Methanohalophilus
           mahii DSM 5219]
 gi|292665992|gb|ADE35841.1| tRNA methyltransferase complex GCD14 subunit [Methanohalophilus
           mahii DSM 5219]
          Length = 250

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A       +LE   G+G  ++ L      V++ EI +  VE AR N++   ++NV++   
Sbjct: 91  AGINSSDRILEAGTGSGVLAIYLGSVAKEVISYEIREDFVENARANLSMAGLSNVEVRCG 150

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
                   MR+  +F     +DI       
Sbjct: 151 D---IVDVMRQGTDFFDAIVLDIKDSAESV 177


>gi|284167242|ref|YP_003405520.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284016897|gb|ADB62847.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 274

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 11/128 (8%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           N+ + E  L   +   G  +L++  G+G  S+  AR   +VLA +I+   VE        
Sbjct: 26  NMALAEAALQRARLRSGMRMLDVAAGSGGLSIPAARAGAQVLATDISPAMVERLEARARE 85

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             + N+    M      QA+  E +       D+ + +F  +       GL +    + +
Sbjct: 86  EGLTNLGARVMD----GQALDLEDDT-----FDVAASQFGVMLFPDLPRGLSE-MTRVTK 135

Query: 314 AYPHILYI 321
               ++ +
Sbjct: 136 PGGRVVLV 143


>gi|258514617|ref|YP_003190839.1| Methyltransferase type 11 [Desulfotomaculum acetoxidans DSM 771]
 gi|257778322|gb|ACV62216.1| Methyltransferase type 11 [Desulfotomaculum acetoxidans DSM 771]
          Length = 247

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E +L   +     +++L CG GN +   AR   RV  V+++   ++ AR      ++N 
Sbjct: 27  IEELLVKFEYSPKTIIDLACGTGNTAFPFARRGYRVAGVDLSARMIDIARKKAEKENLNI 86

Query: 259 VKIVR 263
              V+
Sbjct: 87  NFFVQ 91


>gi|227495863|ref|ZP_03926174.1| methyltransferase (methylase) [Actinomyces urogenitalis DSM 15434]
 gi|226834620|gb|EEH67003.1| methyltransferase (methylase) [Actinomyces urogenitalis DSM 15434]
          Length = 193

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 15/108 (13%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L+ G+G   L   +R    V+ V+ A+ + +    N+ A  +  V+ V   +  +
Sbjct: 45  ARVLDLFAGSGALGLEAASRGAGEVVLVDSARTATQVCEKNVRALGIRGVRTVTAKAATY 104

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                                    + +DPP    ++    +++    
Sbjct: 105 VA--------------GPAGAPVDLVLIDPPYDLDEEGVRAVLEPLTR 138


>gi|241997936|ref|XP_002433611.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215495370|gb|EEC05011.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 324

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 10/151 (6%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANK-TKICLDRDYVDERLTVAGRTLIYRQIENSFTQ 189
           W  C   L+    A   +I   G      ++ L  D         G    +   +  F+ 
Sbjct: 66  WHACCSALKCQRIAVNGRIAPDGHRTPLVRLVLGGD-GWMTHLDNGIKYSFDVTKCMFSS 124

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAA 247
            N  I   +    L         +++LY G G F+L   +      + + E  K + EA 
Sbjct: 125 GN--ITEKLRVAKLDCHGE---TVVDLYAGIGYFTLPYLVHAKARHIHSCEWNKDAAEAL 179

Query: 248 RYNIAANHV-NNVKIVRMSSKEFTQAMRRER 277
             N+  N V +   I     ++       +R
Sbjct: 180 TKNLQLNGVEDRCTIHFGDCRKVCPEGVADR 210


>gi|169237599|ref|YP_001690803.1| putative methyltransferase (homolog to phosphatidylethanolamine
           N-methyltransferase) [Halobacterium salinarum R1]
 gi|167728826|emb|CAP15716.1| putative methyltransferase (homolog to phosphatidylethanolamine
           N-methyltransferase) [Halobacterium salinarum R1]
          Length = 281

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A       +L+L  G G F   LA         V+ V++    +  AR N+A N   NV+
Sbjct: 89  AAMAPGETVLDLGSGAG-FDCFLAAQEVGPDGHVIGVDMTPEMISKARENVAKNDAENVE 147

Query: 261 I 261
            
Sbjct: 148 F 148


>gi|59713061|ref|YP_205837.1| methyltransferase [Vibrio fischeri ES114]
 gi|59481162|gb|AAW86949.1| predicted methyltransferase [Vibrio fischeri ES114]
          Length = 200

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 22/115 (19%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G       +R  + V+ +E+ K +    + N  +   +N++I    +  F   
Sbjct: 66  LDLFSGSGGLGFEAASRGAEHVVMLELNKQAHAQLKQNAESLKADNIEIHHTDALTFLNQ 125

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPH-----ILYI 321
                           +  F  +F+DPP R  L + T+  ++         ++YI
Sbjct: 126 ---------------AATPFDVVFIDPPFRKDLLEETLTKLENNGWLAANAMIYI 165


>gi|50843267|ref|YP_056494.1| hypothetical protein PPA1810 [Propionibacterium acnes KPA171202]
 gi|289424993|ref|ZP_06426772.1| methyltransferase small domain protein [Propionibacterium acnes
           SK187]
 gi|50840869|gb|AAT83536.1| conserved protein [Propionibacterium acnes KPA171202]
 gi|289154692|gb|EFD03378.1| methyltransferase small domain protein [Propionibacterium acnes
           SK187]
 gi|313763187|gb|EFS34551.1| methyltransferase small domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313793309|gb|EFS41367.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313801048|gb|EFS42316.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313816523|gb|EFS54237.1| methyltransferase small domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313828417|gb|EFS66131.1| methyltransferase small domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313838000|gb|EFS75714.1| methyltransferase small domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314914384|gb|EFS78215.1| methyltransferase small domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917707|gb|EFS81538.1| methyltransferase small domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314919565|gb|EFS83396.1| methyltransferase small domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314930156|gb|EFS93987.1| methyltransferase small domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314957173|gb|EFT01277.1| methyltransferase small domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314957814|gb|EFT01917.1| methyltransferase small domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314963492|gb|EFT07592.1| methyltransferase small domain protein [Propionibacterium acnes
           HL082PA1]
 gi|315077221|gb|EFT49286.1| methyltransferase small domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315097934|gb|EFT69910.1| methyltransferase small domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315100699|gb|EFT72675.1| methyltransferase small domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315106087|gb|EFT78063.1| methyltransferase small domain protein [Propionibacterium acnes
           HL030PA1]
 gi|315109180|gb|EFT81156.1| methyltransferase small domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327451553|gb|EGE98207.1| methyltransferase small domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328752054|gb|EGF65670.1| methyltransferase small domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328755549|gb|EGF69165.1| methyltransferase small domain protein [Propionibacterium acnes
           HL025PA2]
          Length = 206

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 20/112 (17%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  +  LAR      ++AV++   +++    N  A  V + ++  
Sbjct: 63  PPPSDGTFLDLGCGYGPIACALARACPGSHIVAVDVNDLAIDLTTRNAKALRVGD-RVHA 121

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
              +E    +R                 F  I+ +PP      A   ++  +
Sbjct: 122 CRPEEVDPDLR-----------------FDEIWSNPPIRVGKAALHEILTTW 156


>gi|10803668|ref|NP_046066.1| hypothetical protein VNG7121 [Halobacterium sp. NRC-1]
 gi|2822399|gb|AAC82905.1| unknown [Halobacterium sp. NRC-1]
          Length = 391

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A       +L+L  G G F   LA         V+ V++    +  AR N+A N   NV+
Sbjct: 199 AAMAPGETVLDLGSGAG-FDCFLAAQEVGPDGHVIGVDMTPEMISKARENVAKNDAENVE 257

Query: 261 I 261
            
Sbjct: 258 F 258


>gi|332704843|ref|ZP_08424931.1| Methyltransferase type 11 [Desulfovibrio africanus str. Walvis Bay]
 gi|332554992|gb|EGJ52036.1| Methyltransferase type 11 [Desulfovibrio africanus str. Walvis Bay]
          Length = 237

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 198 MLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +  W+    + I G + L+L CG G  ++V +    RVL ++    ++  AR N   N V
Sbjct: 74  LCGWLEENRQAISGKVCLDLGCGLGLTAIVASSFGARVLGMDYEPEALRYARENAVINDV 133

Query: 257 NNVKIVRMS 265
                  M 
Sbjct: 134 GQPLWTAMD 142


>gi|308463497|ref|XP_003094022.1| CRE-COQ-3 protein [Caenorhabditis remanei]
 gi|308248685|gb|EFO92637.1| CRE-COQ-3 protein [Caenorhabditis remanei]
          Length = 268

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 192 AGINVHMLEWVLAATKGIQG----DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
             +N   + W++      QG     ++++  G G  S+ LAR    V  ++  K +VEAA
Sbjct: 54  HSLNRVRVPWIVDNVGKGQGSGPARVVDVGSGGGLLSVPLARSGFDVTGIDATKEAVEAA 113

Query: 248 RYNIA-----ANHV-NNVKIVRMSSKEFTQAMRREREFN 280
           R ++         + + ++    S + F Q    +  F+
Sbjct: 114 RLSLKVKALERAGIADRLRFEHTSVEAFCQKPENKAAFD 152


>gi|20092266|ref|NP_618341.1| hypothetical protein MA3454 [Methanosarcina acetivorans C2A]
 gi|19917504|gb|AAM06821.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 265

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG G F+++LAR    V AV+ A+  V+ A  NI  N   N K+ +  +    +
Sbjct: 64  HVLDVGCGPGFFTVMLARLKHNVTAVDGAEGMVKRAGTNIK-NETLNAKVYKGDAVLLDK 122

Query: 272 AMRREREFNRLKDIDIHSYRFK 293
                 +    +D+    Y  +
Sbjct: 123 EKEDSLDAIVSRDVVWTLYDPE 144


>gi|223932123|ref|ZP_03624127.1| modification methylase, HemK family [Streptococcus suis 89/1591]
 gi|302023744|ref|ZP_07248955.1| methyltransferase [Streptococcus suis 05HAS68]
 gi|330832777|ref|YP_004401602.1| modification methylase, HemK family [Streptococcus suis ST3]
 gi|223899104|gb|EEF65461.1| modification methylase, HemK family [Streptococcus suis 89/1591]
 gi|329307000|gb|AEB81416.1| modification methylase, HemK family [Streptococcus suis ST3]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 21/108 (19%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++  +L    G    +L++  G+G  ++ LA  R    V+AV+I+K ++  A+ N  
Sbjct: 95  TEELVNLILQENSGAGLRILDIGTGSGAIAISLAKARSDWEVVAVDISKDALAVAQENAR 154

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N V+    V     +  QA+                 +F  I  +PP
Sbjct: 155 TNQVS----VHFLESDVFQAVTG---------------QFDLIVSNPP 183


>gi|258513429|ref|YP_003189651.1| modification methylase, HemK family [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777134|gb|ACV61028.1| modification methylase, HemK family [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 289

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 12/90 (13%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDR--VLA 236
              N  +         ++E  L   +G  G+   +L++  G+G  ++ +AR   R  V A
Sbjct: 84  FIVNPAVLVPRPETEILVERALKFLEGKPGEELLVLDIGTGSGAIAVSMARMNSRLRVYA 143

Query: 237 VEIAKPSVEAARYNIAANHVNN-VKIVRMS 265
           V+ ++ ++  A++N A + V   +      
Sbjct: 144 VDCSRDALVLAQHNAAIHGVAGRIHFFHGD 173


>gi|255323236|ref|ZP_05364371.1| flagellar basal-body rod protein [Campylobacter showae RM3277]
 gi|255299759|gb|EET79041.1| flagellar basal-body rod protein [Campylobacter showae RM3277]
          Length = 239

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +     +   +       +G  ++++ CG G  +L+LA+    +  ++I+   ++    +
Sbjct: 20  SEFQRGLYAKIEEFGVKFEGKSVVDIGCGTGVHTLLLAQICREITGMDISGEMLKVMLED 79

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            A  +++N+  V+   K F          NR+ D+              P    ++  V 
Sbjct: 80  AAKFNISNLTAVQSDFKNFNP--------NRVYDV--------AFSTMSPAIADEEDFVK 123

Query: 311 MVQAYPHILYI 321
            +      +Y+
Sbjct: 124 FINLGEKRVYL 134


>gi|212633533|ref|YP_002310058.1| SAM-dependent methyltransferase [Shewanella piezotolerans WP3]
 gi|212555017|gb|ACJ27471.1| SAM-dependent methyltransferase, putative [Shewanella piezotolerans
           WP3]
          Length = 345

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 22/145 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E+V A ++     +L L+          A     RV+ ++ +  ++ A + N   NHV  
Sbjct: 149 EYVKAHSQNRS--VLNLFSYTCGIGTAAAVGGASRVVNIDFSSFALAAGKKNAQLNHVEG 206

Query: 259 -VKIVRMSSKEFTQAMRREREFNRL-----KDIDIHSYRFKTIFVDPPRSGLDDATV--- 309
             + V+  +    + +   +   R          + + +F  +F+DPPR       +   
Sbjct: 207 VCEFVQSDAFPALRQLAGLKVGGRRNQKLPAYPKLAATQFDLVFLDPPRYAKSPFGIVDL 266

Query: 310 ----------GMVQAYPHILYISCN 324
                      ++        + CN
Sbjct: 267 INDYQSLFKPALLTTKAKGTIVCCN 291


>gi|194290878|ref|YP_002006785.1| n5-glutamine methyltransferase, modifies release factors rf-1 and
           rf-2 [Cupriavidus taiwanensis LMG 19424]
 gi|193224713|emb|CAQ70724.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Cupriavidus taiwanensis LMG 19424]
          Length = 298

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 18/100 (18%)

Query: 209 IQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
              ++L+L  G+G  ++ LAR     RV A +I+  ++  A+ N  A    +++ +    
Sbjct: 119 PHPNVLDLGTGSGILAVTLARERRDARVWATDISPGALMVAQDNARALGAEHIEFLVSD- 177

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                                   RF  I  +PP     D
Sbjct: 178 ---------------WYSALPPDLRFHLIVSNPPYIAAGD 202


>gi|145595047|ref|YP_001159344.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Salinispora tropica CNB-440]
 gi|145304384|gb|ABP54966.1| precorrin-6Y C5,15-methyltransferase (decarboxylating) [Salinispora
           tropica CNB-440]
          Length = 425

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 20/135 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++  G+G+  +  A     V+AVE    +V+  R N A + V+ V++V  ++      
Sbjct: 281 VWDVGAGSGSVGIECALLGAAVVAVERDSAAVDLVRGNAARHGVD-VRVVPGAA------ 333

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHILYISCNPDSLCRD 331
                  + L D D          V    +       V  + A   +      P    RD
Sbjct: 334 ---PAALDGLPDPDAVFVGGGGTGVLAAVAARQPGRIVVALAALDRVA-----P---ARD 382

Query: 332 LSILSTTHTIERLAL 346
            ++ +  +T+E + L
Sbjct: 383 -ALRAAGYTVEGVQL 396


>gi|61653196|gb|AAX48150.1| putative magnesium-protoporphyrin O-methyltransferase [uncultured
           proteobacterium DelRiverFos13D03]
          Length = 221

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 15/134 (11%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML  + A  +G+   +L+  CG G  +  LA     V+AV+I+   V+ AR  + A H
Sbjct: 48  AVMLGRLPADLRGV--RVLDAGCGAGQMTAELAARGADVVAVDISPALVDIARNRLPAEH 105

Query: 256 VNNVKIVRMSSK------EFTQAMRREREFNRLKDIDIHSYRF------KTIFVDPPRSG 303
            + V              +F  AM     +   +DI    +R         +F   PR+ 
Sbjct: 106 AHKVTFASGDMTADYGRFDFVLAMDSLIYYG-TQDITSALHRLGRNTAQAVVFTVAPRTP 164

Query: 304 LDDATVGMVQAYPH 317
                  + +A+P 
Sbjct: 165 FLMTFWTLGKAFPR 178


>gi|332358319|gb|EGJ36145.1| rRNA methylase [Streptococcus sanguinis SK355]
          Length = 183

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDTVVDATMGNGHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQAM 273
           +N +++    +   Q +
Sbjct: 66  DNAQLILAGHETLDQYL 82


>gi|239941322|ref|ZP_04693259.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239987784|ref|ZP_04708448.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
          Length = 241

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            G +LEL CG G  ++ LA     V AV+++  ++  AR          ++         
Sbjct: 53  PGRVLELGCGPGRNAVHLASLGFEVDAVDLSPAALAWARERAEEAGAGFLRFHHGDVFAL 112

Query: 270 TQ 271
           T 
Sbjct: 113 TA 114


>gi|254444161|ref|ZP_05057637.1| Conserved hypothetical protein 95 [Verrucomicrobiae bacterium
           DG1235]
 gi|198258469|gb|EDY82777.1| Conserved hypothetical protein 95 [Verrucomicrobiae bacterium
           DG1235]
          Length = 159

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L+ G G++ L  L+R       VE+ + +    + N A        IV  S +E 
Sbjct: 19  ARVLDLFAGTGSYGLEALSRGASHATFVELNRRATAMVQTNAA--------IVAKSMQEK 70

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
              +    +  +       + RF  IFVDPP   L+  T  +
Sbjct: 71  LDTLISTADATKWTPP---AERFDIIFVDPPYEALEQLTPKL 109


>gi|32033820|ref|ZP_00134105.1| COG2890: Methylase of polypeptide chain release factors
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126209496|ref|YP_001054721.1| HemK-like protein [Actinobacillus pleuropneumoniae L20]
 gi|303251819|ref|ZP_07337990.1| HemK-like protein [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307244798|ref|ZP_07526897.1| hypothetical protein appser1_120 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307249119|ref|ZP_07531126.1| hypothetical protein appser2_20810 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307249195|ref|ZP_07531192.1| hypothetical protein appser4_120 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307253752|ref|ZP_07535606.1| hypothetical protein appser9_120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258209|ref|ZP_07539952.1| hypothetical protein appser11_120 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307260447|ref|ZP_07542142.1| hypothetical protein appser12_230 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|126098288|gb|ABN75116.1| HemK-like protein [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|302649249|gb|EFL79434.1| HemK-like protein [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306854243|gb|EFM86449.1| hypothetical protein appser1_120 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306854407|gb|EFM86603.1| hypothetical protein appser2_20810 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306858719|gb|EFM90778.1| hypothetical protein appser4_120 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306863236|gb|EFM95176.1| hypothetical protein appser9_120 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867669|gb|EFM99514.1| hypothetical protein appser11_120 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306869850|gb|EFN01632.1| hypothetical protein appser12_230 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 290

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 70/239 (29%), Gaps = 47/239 (19%)

Query: 80  SLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR 139
              I AL   +     L P   A L  +  +T ++  AI       L      E A  L 
Sbjct: 8   DQAITALNANIAQDPYLNPKTDANLL-LQAVTKRTKSAIFAFGETALHQTELAELAQLLA 66

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             L                 I  ++++    L V+  TLI R                ++
Sbjct: 67  RRLQGEPMAY----------ILGEKEFWSLPLKVSPHTLIPRPD-----------TERLV 105

Query: 200 EWVLAATKGI-----QGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNI 251
           E  L              +L+L  G G  +L LA       +++ V+    +V  A  N 
Sbjct: 106 EVALDWVYKRLESQQTLQILDLGTGTGAIALALASELGDKAQIIGVDFKPEAVTLAETNR 165

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                 NV+ ++                       + + +F  I  +PP     D  + 
Sbjct: 166 QNLGFENVRFLQSD-----------------WFSALENRQFDLIVSNPPYIDKQDKNLQ 207


>gi|332716893|ref|YP_004444359.1| protoporphyrinogen oxidase protein [Agrobacterium sp. H13-3]
 gi|325063578|gb|ADY67268.1| protoporphyrinogen oxidase protein [Agrobacterium sp. H13-3]
          Length = 289

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/229 (21%), Positives = 80/229 (34%), Gaps = 46/229 (20%)

Query: 79  GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL 138
            S  + A    + A    +PLL A+L  +  +T  S    V    H       RE + R+
Sbjct: 9   VSTELAAARKRLQAAGIADPLLDARLL-VADVTGFSLTDFVMKPDH----PVTREESARI 63

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
              +  R       G     +I   R++    L ++  TL  R                +
Sbjct: 64  AAMVERR------AGGEPVHRILGHREFHGLDLLLSTETLEPRPD-----------TEVL 106

Query: 199 LEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAV--EIAKPSVEAARYNI 251
           ++ +L A K I  D     +L+L  G G   L L +       V  +I+  ++E A  N 
Sbjct: 107 VDTLLPALKKIVADKGSARILDLGTGTGAICLALLKECPEATGVGSDISADALETAAKNA 166

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           A N + + +   M S  F +                 S RF  I  +PP
Sbjct: 167 ARNGLAS-RFETMRSDWFKK----------------ISGRFDIIVSNPP 198


>gi|309791823|ref|ZP_07686310.1| methyltransferase small [Oscillochloris trichoides DG6]
 gi|308226145|gb|EFO79886.1| methyltransferase small [Oscillochloris trichoides DG6]
          Length = 195

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L+L CG G  ++ +A+ F    V+A +    +V  AR N   N V +V+I+     E 
Sbjct: 54  RILDLGCGCGVIAITMAQRFPEAAVVAADKDLLAVRYARANAQLNAVPHVQILGSVGLES 113

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             A   +  F+ +          +   + P
Sbjct: 114 VPAGPYDLIFSNIPAKIGDLAIEQEFILGP 143


>gi|303243600|ref|ZP_07329942.1| N2,N2-dimethylguanosine tRNA methyltransferase [Methanothermococcus
           okinawensis IH1]
 gi|302486161|gb|EFL49083.1| N2,N2-dimethylguanosine tRNA methyltransferase [Methanothermococcus
           okinawensis IH1]
          Length = 378

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 29/175 (16%)

Query: 187 FTQP----NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD------RVLA 236
           F  P    N  I+V +++  L   K  +  + +  CG+G   L  A+         +V+ 
Sbjct: 26  FYNPIMEINRDISVSVIQSFLNHYKRDEFIICDPLCGSGARGLRYAKELKNPSGTVKVII 85

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            +I   +V+ A+ N+  N ++NV+I+   +            F     +D+  +      
Sbjct: 86  GDINPNAVKLAKENLKVNELDNVEIIHKDANVLLS-----ENFRTFNVVDLDPFGS---- 136

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
              P   +D A    +     +    C   +   D ++L   +    +  +D  P
Sbjct: 137 ---PNPYIDSAIRSCITKNGIL----CMTAT---DTAVLCGAYKKACIRNYDAIP 181


>gi|291444762|ref|ZP_06584152.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|291347709|gb|EFE74613.1| methyltransferase [Streptomyces roseosporus NRRL 15998]
          Length = 255

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            G +LEL CG G  ++ LA     V AV+++  ++  AR          ++         
Sbjct: 67  PGRVLELGCGPGRNAVHLASLGFEVDAVDLSPAALAWARERAEEAGAGFLRFHHGDVFAL 126

Query: 270 TQ 271
           T 
Sbjct: 127 TA 128


>gi|284989869|ref|YP_003408423.1| type 12 methyltransferase [Geodermatophilus obscurus DSM 43160]
 gi|284063114|gb|ADB74052.1| Methyltransferase type 12 [Geodermatophilus obscurus DSM 43160]
          Length = 179

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 11/123 (8%)

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA-RYNIAANHV 256
           L W         G+ +LE+ CG+G    +LA     V+ V+ +   V AA R N AA   
Sbjct: 10  LSWAAGVVAPRPGERVLEVGCGHGVLVALLAERAAEVVGVDRSPTMVTAAGRRNHAAVEA 69

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                VR+ +    +A      F+ +   ++ +        DP ++   D    ++    
Sbjct: 70  GR---VRLQAAALHEADLGPHPFDVVVSFNVRA------LSDPAQAVTWDVVSRVLAPAG 120

Query: 317 HIL 319
            ++
Sbjct: 121 RVV 123


>gi|197124464|ref|YP_002136415.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K]
 gi|196174313|gb|ACG75286.1| NusB/RsmB/TIM44 [Anaeromyxobacter sp. K]
          Length = 455

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 17/121 (14%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSV 244
            Q        +         G    +L+     G  +  LA        V+A+E+     
Sbjct: 239 FQVQDEAAQLVTLLAAGDLAGRPARVLDACAAPGGKAFHLAELLGPGAEVVAIELHPRKA 298

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +      A   +  V++V   + +                  +    F  + VD P +GL
Sbjct: 299 DELAREAARRGLAAVRVVCADAGK--------------PIPGLEPGSFDAVLVDAPCAGL 344

Query: 305 D 305
            
Sbjct: 345 G 345


>gi|158337422|ref|YP_001518597.1| methyltransferase [Acaryochloris marina MBIC11017]
 gi|158307663|gb|ABW29280.1| methyltransferase [Acaryochloris marina MBIC11017]
          Length = 214

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 9/139 (6%)

Query: 189 QPNAGIN--VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           QP A        LE V         ++LE  CG G+ +L+ A H   + A++ +   ++ 
Sbjct: 18  QPIADQATYEKKLE-VTQKYLQPDMEVLEFGCGTGSTALIHAPHVKHIRAIDFSANMIKI 76

Query: 247 ARYNIAANHVNNVKIVRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           AR    A ++ NV   + S  E          +      + LKD +    +   I     
Sbjct: 77  ARSKAEAQNIQNVTFEQASIDELSLPNQSIDVVLGLNVLHLLKDKETEIAKVYNILKPGG 136

Query: 301 RSGLDDATVGMVQAYPHIL 319
           R       +G    +  ++
Sbjct: 137 RFITSTVCLGGTMDWLKVV 155


>gi|90022890|ref|YP_528717.1| protein methyltransferase hemK [Saccharophagus degradans 2-40]
 gi|89952490|gb|ABD82505.1| modification methylase, HemK family [Saccharophagus degradans 2-40]
          Length = 288

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYN 250
            + + + + +          +L+L  G G  +L LA       + AV+    +VE A  N
Sbjct: 105 EVALELAQTLQQKNPQEHIRILDLGTGTGAIALALASELPTANITAVDKMPQAVELAEKN 164

Query: 251 IAANHVNNVKIVRMS 265
            AA    NV ++   
Sbjct: 165 RAALGFKNVTVLHSD 179


>gi|303237158|ref|ZP_07323728.1| ribosomal protein L11 methyltransferase [Prevotella disiens
           FB035-09AN]
 gi|302482545|gb|EFL45570.1| ribosomal protein L11 methyltransferase [Prevotella disiens
           FB035-09AN]
          Length = 287

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
            +  D  W E                 +I  + +    L  D  DE+       LI R  
Sbjct: 73  EKAEDKNWNEKWEN-AGFAPIIIDNKCVICSSKQENPQLLLDTADEK-----NALIIRID 126

Query: 184 E-NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAK 241
              +F          +++ +L      +  +L+  CG G  S+V A+     V A +I +
Sbjct: 127 PKQAFGSGTHETTQMIVDELLNMDLANK-TILDCGCGTGILSIVAAKRNAKEVCAYDIDE 185

Query: 242 PSVEAARYNIAANHVN------NVKIVRMSSKEFTQAMRREREFNRLKDID 286
            SV+   YN   N+V       N  I++  +K+F   +        L+D+D
Sbjct: 186 WSVKNTEYNANLNNVELSVKEGNCNIIKEFNKKFDIVIANINRNILLEDMD 236


>gi|300088067|ref|YP_003758589.1| protein-(glutamine-N5) methyltransferase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527800|gb|ADJ26268.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 273

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 12/132 (9%)

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI---- 194
           R  +HA   +        + +  L+R    E L      + +  +E    + N  +    
Sbjct: 35  RAGIHAHPERELTAAEEARYRALLERLSAGEPLQYLTGKMEFYGLE---FEVNPSVLVPR 91

Query: 195 --NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARY 249
                M E  L   KG     + ++ CG+G  ++ LA    R  V A +I+  ++E AR 
Sbjct: 92  PETEIMAERALNIAKGYDRPAIADIGCGSGALAVTLAVRLPRSTVTAADISPTALETARR 151

Query: 250 NIAANHVNNVKI 261
           N   +HV N+  
Sbjct: 152 NAVRHHVANIGF 163


>gi|302558380|ref|ZP_07310722.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces griseoflavus Tu4000]
 gi|302475998|gb|EFL39091.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces griseoflavus Tu4000]
          Length = 281

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 36/173 (20%)

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI---- 194
           R  LHA K               + R    E L        +R +E    Q   G+    
Sbjct: 39  RGELHAVKDSDFDARYWE----VIARREAREPLQHITGHAYFRYLE---LQVGPGVFVPR 91

Query: 195 --NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
                ++ W + A +    ++  +++L  G+G  +L LA+     RV AVE+++ ++   
Sbjct: 92  PETESVVGWAIDAVRAMDVVEPCIVDLCTGSGAIALALAQEVPRSRVYAVELSEDALRWT 151

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           R N+  + V                    R+ N L        +   +  +PP
Sbjct: 152 RKNMEGSRV------------------ELRQGNALTAFPDLDGQVDLVITNPP 186


>gi|268315830|ref|YP_003289549.1| methyltransferase [Rhodothermus marinus DSM 4252]
 gi|262333364|gb|ACY47161.1| methyltransferase [Rhodothermus marinus DSM 4252]
          Length = 182

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
           V +       D+L+L+ G G   L  ++R    V  VE+  P +   R N  A  V    
Sbjct: 36  VESRMDLEGADVLDLFAGTGALGLEAISRGAVAVTFVELQGPVLACVRENARALGVEEAC 95

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + +R  + E+ +                    F  I  DPP
Sbjct: 96  EFIRGDAVEYLRRY--------------SGPPFDLILADPP 122


>gi|150376492|ref|YP_001313088.1| HemK family modification methylase [Sinorhizobium medicae WSM419]
 gi|150031039|gb|ABR63155.1| modification methylase, HemK family [Sinorhizobium medicae WSM419]
          Length = 280

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 17/121 (14%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +         ++++ CG+GN +L +A      RV   ++   +V  AR N+    + + 
Sbjct: 87  AILREAARPATVVDMCCGSGNLALGIAAEVPLARVWGADLTDSTVALARRNVERLALGDR 146

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR---SGLDDATVGMVQAYP 316
             VR    +   A+  E                  I  +PP    S L+  +  ++ + P
Sbjct: 147 VFVR--QGDLFAALAGEGLEE----------AVDMIVCNPPYISTSRLESDSAHLLASEP 194

Query: 317 H 317
            
Sbjct: 195 R 195


>gi|551666|emb|CAA57169.1| magnesium-protoporphyrin O-methyltransferase [Rhodobacter
           sphaeroides]
          Length = 222

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--SKEF 269
            +L+  CG G  ++ LA    +V+AV+I+   VE AR  +   H + V        + + 
Sbjct: 62  RVLDAGCGAGQMTVELAARGAQVMAVDISPQLVEIARKRLPPEHQDRVTFASGDMLADDL 121

Query: 270 --TQAMRREREFNRLKDIDIHS--------YRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                +          D DI +         R   +F   PR+    A   M + +P 
Sbjct: 122 GRFDYVVAMDSLIYYTDADIAAALDRLGARTRHSVVFTVAPRTPFLMAFWTMGKLFPR 179


>gi|332141110|ref|YP_004426848.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
           methyltransferase activity and a PUA domain [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|224493201|sp|B4RRY8|RLMI_ALTMD RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|327551132|gb|AEA97850.1| putative methyltransferase with S-adenosyl-L-methionine-dependent
           methyltransferase activity and a PUA domain [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 397

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 48/92 (52%), Gaps = 11/92 (11%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D+L  +   G FS   L+     V  V++++P+++ A++++A N  ++ +   ++ K+  
Sbjct: 222 DVLNCFSYTGTFSCYALSGGAKSVTNVDVSQPALDLAKHHVAINGFDDKRTQYLN-KDVF 280

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +A+R   E N+         +F  + +DPP+ 
Sbjct: 281 KALREYHEQNK---------QFDMVILDPPKF 303


>gi|224371151|ref|YP_002605315.1| UbiE5 [Desulfobacterium autotrophicum HRM2]
 gi|223693868|gb|ACN17151.1| UbiE5 [Desulfobacterium autotrophicum HRM2]
          Length = 363

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 18/128 (14%)

Query: 176 RTLIYRQIENSFTQP------NAGINVHMLEW--------VLAATKGIQGDLLELYCGNG 221
           + + + Q  +   Q       NA     ++          +L        ++L+L CG G
Sbjct: 129 KGVPFSQYPD--FQAFMAELSNAKHQQVLISKFLPTVDNGLLVPRLERGIEVLDLGCGEG 186

Query: 222 NFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
               ++A+ F   R   V+    ++E AR + A   + NV  V   +       R  R+F
Sbjct: 187 VALNLMAKAFPNSRFTGVDNFGAALEKARADAAGLGLGNVDYVAEDAANPVIGERFRRKF 246

Query: 280 NRLKDIDI 287
           + +   D 
Sbjct: 247 DYVTAFDA 254


>gi|224076221|ref|XP_002304908.1| predicted protein [Populus trichocarpa]
 gi|222847872|gb|EEE85419.1| predicted protein [Populus trichocarpa]
          Length = 1031

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 73/206 (35%), Gaps = 25/206 (12%)

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            +      S      M E +A +  +  L   L +      +    IV L      D  W
Sbjct: 731 EVGEVRKSSKSPFQTMNESIALLIKQKDLAETLLEQLPNRWERLGDIVVLPATSFKDPIW 790

Query: 132 ----RECAIRLRDALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYR 181
               +E    +  +L+ R+   Q    +  T+      +  D  +VD R       ++Y 
Sbjct: 791 DSISKELWPIVAKSLNTRRVARQGRVASTGTRDSTLEILVGDNGWVDHR----ENGILYS 846

Query: 182 QIENS--FTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLA 236
                  F+        ++ E +       + +++ +L+ G G F+L   +      V A
Sbjct: 847 FDATKCMFS------WGNLSEKLRMGNLECKDEVIVDLFAGIGYFTLPFLVRAKAKLVYA 900

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIV 262
            E    +VEA R N+  N V++  IV
Sbjct: 901 CEWNPHAVEALRRNLEVNSVSDRCIV 926


>gi|254483619|ref|ZP_05096842.1| hypothetical protein GPB2148_2765 [marine gamma proteobacterium
           HTCC2148]
 gi|214036128|gb|EEB76812.1| hypothetical protein GPB2148_2765 [marine gamma proteobacterium
           HTCC2148]
          Length = 396

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 28/185 (15%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV----- 196
           L       +  G A  +++ L    V +++ +    + +          +AG        
Sbjct: 157 LRGDSRSRRESGLAEDSEVVLG--SVPDQVPLEENGVRFLAP------VHAGQKTGWFYD 208

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
           H +     A       +L++Y   G + +       DRV  ++ +  ++E    N A N+
Sbjct: 209 HRMARARLAPWVAGKSVLDVYSYIGGWGIQAGSFGADRVCCIDSSATALEGVMVNAALNN 268

Query: 256 VNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQ 313
           + + V + + S+ E  + M  E               +  + +DPP        +   V 
Sbjct: 269 IADKVSVRQGSAPETMKQMISE------------GLTYDVVILDPPAFIQRRKDIKKGVT 316

Query: 314 AYPHI 318
           AY  I
Sbjct: 317 AYRRI 321


>gi|182413408|ref|YP_001818474.1| methyltransferase type 11 [Opitutus terrae PB90-1]
 gi|177840622|gb|ACB74874.1| Methyltransferase type 11 [Opitutus terrae PB90-1]
          Length = 267

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 212 DLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G F   LA        RV+ V++    +  AR N A +   NV+      +
Sbjct: 84  TVLDLGSGAG-FDCFLAARQLNGTGRVIGVDMTPAMITKARANAAKSGFANVEFRLGEIE 142

Query: 268 EFTQA 272
               A
Sbjct: 143 ALPVA 147


>gi|124486498|ref|YP_001031114.1| hypothetical protein Mlab_1686 [Methanocorpusculum labreanum Z]
 gi|124364039|gb|ABN07847.1| Methyltransferase type 11 [Methanocorpusculum labreanum Z]
          Length = 287

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAA 253
             M  +          ++L++ CG G  ++ +A       V  +++ + SVE ++ N   
Sbjct: 127 RKMRAFAEVLPLLSGKNILDVGCGLGTLAIKIAEAKPESLVYGIDLLESSVEQSKLNAEV 186

Query: 254 NHVNNVKIVRMSSKEF 269
             V N + V  ++ E 
Sbjct: 187 EGVANTRFVVANTYEL 202


>gi|114321787|ref|YP_743470.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228181|gb|ABI57980.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 220

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A         LE+  G+G  +  LAR    V++VEI    V+ AR    A  ++NV +
Sbjct: 73  LQALAPEPGERALEIGTGSGFLAACLARMAASVVSVEIHDELVQRARTIHQARGIDNVTV 132

Query: 262 VRMSSKEFTQAMRR 275
            +  +       RR
Sbjct: 133 QQGDAAAGFDDGRR 146


>gi|283955323|ref|ZP_06372822.1| putative SAM-dependent methyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793083|gb|EFC31853.1| putative SAM-dependent methyltransferase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 239

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 35/63 (55%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +++++ CG G ++L LA+    +LA++ AK  +E  + +    ++NN+K    S + 
Sbjct: 37  QNKNIIDIGCGTGVWTLHLAKEAKEILALDNAKAMLEILQEDAKKLNLNNIKCENSSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|257386959|ref|YP_003176732.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257169266|gb|ACV47025.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 262

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 16/165 (9%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANH 255
           + V+       G+ +L+L CG G+ +  +A        VL ++ +   +  AR       
Sbjct: 23  DSVVDLLDPRPGERILDLGCGTGHLTATVADAVGSAGDVLGIDASSEMIRQARAAYPDLR 82

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS----GLDDATVGM 311
            + V      + E   A+      + + D D  S R         R     G       +
Sbjct: 83  FDCVDATAFETDERFDAVFSNAALHWIDDQDAVSERVAAALAPNGRYVAELGASGNVAAI 142

Query: 312 VQAYPHIL----YISCNP---DSLCRDLSILST-THTIERLALFD 348
           V A    L    Y + +P    ++    ++L      +    +FD
Sbjct: 143 VAAVRTELRDRGYDAADPWYFPTIGEHATLLERHGFAVRSATVFD 187


>gi|78065162|ref|YP_367931.1| ribosomal protein L11 methyltransferase [Burkholderia sp. 383]
 gi|123569367|sp|Q39JS9|PRMA_BURS3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|77965907|gb|ABB07287.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia sp. 383]
          Length = 300

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR N   NH 
Sbjct: 156 MEWLEQSVKPGQS-VLDYGCGSGILAI-LAKKCGANPVIGIDIDPQAVESARQNSERNHA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|157879051|ref|XP_001687354.1| arginine N-methyltransferase [Leishmania major strain Friedlin]
 gi|321438269|emb|CBZ12022.1| putative arginine N-methyltransferase [Leishmania major strain
           Friedlin]
          Length = 405

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
            E +    +G    LL L CG G ++++ AR     V+ V+ +   V+AAR     N + 
Sbjct: 70  YEVIFRNVRGKT--LLHLGCGMGLYTMLAARGMAKMVIGVDSSAI-VDAARVVAEQNGLK 126

Query: 258 NVKIVRMSSKEFTQAMRREREFN 280
           N+  +R    +    +    +F+
Sbjct: 127 NILFIRGRLCDVLHQLPGGMKFD 149


>gi|329114269|ref|ZP_08243031.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter
           pomorum DM001]
 gi|326696345|gb|EGE48024.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter
           pomorum DM001]
          Length = 462

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 17/152 (11%)

Query: 184 ENSFT-QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
           E +F  Q            +L    G +  + +L    G  +  LA     V A+E    
Sbjct: 250 EGAFWVQ---DAAATFPARLLNVQAGEK--VADLCAAPGGKTAQLAATGAHVSAIENNPN 304

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPP 300
            +   + N+A     NV  ++  +  +      +                    ++V  P
Sbjct: 305 RMARLKENLARLGFTNVTTLQADAGTWQPDAPLDAILLDAPCSATGTARRHPDVLWVKRP 364

Query: 301 R------SGLD---DATVGMVQAYPHILYISC 323
           R      +G D   +A   M++    ++Y  C
Sbjct: 365 RDLTTLTAGQDRLLEAAKNMLRPGGRLVYAVC 396


>gi|284161811|ref|YP_003400434.1| hypothetical protein Arcpr_0697 [Archaeoglobus profundus DSM 5631]
 gi|284011808|gb|ADB57761.1| protein of unknown function Met10 [Archaeoglobus profundus DSM
           5631]
          Length = 333

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 213 LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++++ G G F++ +A      ++ A+EI   S      NI  N V NV  +   S   T
Sbjct: 188 VVDMFAGIGYFTIPIAVHTKAKKIYAIEINPDSYFYLLENIELNDVKNVIPILGDSMYVT 247

Query: 271 QAMRRER 277
                +R
Sbjct: 248 PEGVADR 254


>gi|254431600|ref|ZP_05045303.1| putative methyltransferase [Cyanobium sp. PCC 7001]
 gi|197626053|gb|EDY38612.1| putative methyltransferase [Cyanobium sp. PCC 7001]
          Length = 197

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G  +   L R   RV+AVE        AR+N+    V   +  R   +   Q 
Sbjct: 44  LDLFSGSGVMACEALQRGARRVVAVEQDPRIAAVARHNLHL--VQTGEANRNDGRPAPQV 101

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHILYISC 323
                E  R          F  I+ DPP  +GL       V A   +    C
Sbjct: 102 ELHGGEAIRWLQRGCPGEPFTIIYADPPYAAGLYGDLARAVAAGGWLAEGGC 153


>gi|162454711|ref|YP_001617078.1| putative SAM-dependent methyltransferase [Sorangium cellulosum 'So
           ce 56']
 gi|161165293|emb|CAN96598.1| putative SAM-dependent methyltransferase [Sorangium cellulosum 'So
           ce 56']
          Length = 249

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A         L++ CG G  +  LA+    V  ++I    +E AR   A+  + NV  
Sbjct: 29  LDALAPAPSDAALDVACGPGIVACALAQRVASVRGLDIVPAMLEEARKRQASLGLANVTW 88

Query: 262 VRMSS 266
               +
Sbjct: 89  ELGDA 93


>gi|87301859|ref|ZP_01084693.1| Mg-protoporphyrin IX methyl transferase [Synechococcus sp. WH 5701]
 gi|87283427|gb|EAQ75382.1| Mg-protoporphyrin IX methyl transferase [Synechococcus sp. WH 5701]
          Length = 239

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 13/132 (9%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
            +LEW+       Q    +  CG G+ SL LA+     + A ++++  VE AR  +  + 
Sbjct: 58  QVLEWLQEEGDLPQRSFCDAGCGVGSLSLPLAQLGAGSIAASDLSEAMVEEARRRLEDSG 117

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           +     V+ S+ +      R      L            +F+  P++  ++    +    
Sbjct: 118 LP-ADRVQFSASDLESLQGRYDTVICLD-----------VFIHYPQAAAEEMVRHLGGLA 165

Query: 316 PHILYISCNPDS 327
              L +S  P +
Sbjct: 166 ERRLIVSFAPYT 177


>gi|332798014|ref|YP_004459514.1| type 11 methyltransferase [Acidianus hospitalis W1]
 gi|332695749|gb|AEE95216.1| Methyltransferase type 11 [Acidianus hospitalis W1]
          Length = 243

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA    ++  +L++ CG G  S  L +    ++ V+I++  ++ A+     N+V N +  
Sbjct: 35  LAKRYNLERKVLDVPCGIGRVSYFLNKLGYEIVGVDISEKMIKMAK-----NNVPNGRFY 89

Query: 263 RMSS---KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           R      K+     + +   N    +  +S       +   +   +   V  +    +I+
Sbjct: 90  RADMRYLKDVLNGEKFDLVINIFNSLGYYSEEDDLEILKSIKEATNKIAVINLDNRDYII 149

Query: 320 Y 320
           Y
Sbjct: 150 Y 150


>gi|291541026|emb|CBL14137.1| Predicted N6-adenine-specific DNA methylase [Roseburia intestinalis
           XB6B4]
          Length = 498

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAA 253
             ML  +          +L+ +CG G   +   +A+       ++I   ++E AR N + 
Sbjct: 336 AAMLVSLAKPYLKENAQILDPFCGVGTMLIERDIAQPAREKYGIDIFGLAIEGARENASL 395

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
                +  +     +F      +     + 
Sbjct: 396 AG-EKINFIHRDYFDFKHDYLFDEIITNMP 424


>gi|256961204|ref|ZP_05565375.1| modification methylase HemK [Enterococcus faecalis Merz96]
 gi|293384153|ref|ZP_06630047.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           R712]
 gi|293386967|ref|ZP_06631536.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           S613]
 gi|312907896|ref|ZP_07766879.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|312978575|ref|ZP_07790313.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis DAPTO 516]
 gi|256951700|gb|EEU68332.1| modification methylase HemK [Enterococcus faecalis Merz96]
 gi|291078633|gb|EFE15997.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           R712]
 gi|291083637|gb|EFE20600.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           S613]
 gi|310625987|gb|EFQ09270.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           DAPTO 512]
 gi|311288724|gb|EFQ67280.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis DAPTO 516]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
               + ++    +
Sbjct: 157 VLGAD-IEFYHGN 168


>gi|237654275|ref|YP_002890589.1| methyltransferase [Thauera sp. MZ1T]
 gi|237625522|gb|ACR02212.1| methyltransferase [Thauera sp. MZ1T]
          Length = 179

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 16/90 (17%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G G       +R   RV+ VE    +++A            V+IVR  +  F Q+
Sbjct: 49  LDLFAGTGILGFEAASRGAARVVLVEHDARALDALHKAAKTLQAAQVEIVRGDAVRFAQS 108

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                             RF  +F+DPP  
Sbjct: 109 ---------------TPQRFDGVFLDPPYK 123


>gi|21228345|ref|NP_634267.1| arsenite S-adenosylmethyltransferase [Methanosarcina mazei Go1]
 gi|20906812|gb|AAM31939.1| putative methyltransferase [Methanosarcina mazei Go1]
          Length = 248

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 24/136 (17%)

Query: 213 LLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+L  G G F   LA        +V+ V++    VE A+ N      +NV+      + 
Sbjct: 76  VLDLGSG-GGFDCFLAAQKIGSSGKVIGVDMTLEMVEKAQANARKYGYSNVEFRHGDIES 134

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVD-PPRSGLDDATVGMVQAYPHILYISCN--- 324
                        +KD  +       +    P +  +      +++    + YIS     
Sbjct: 135 L-----------PVKDSSVDVIISNCVINLAPDKEKVFREAFRVLKPEGRM-YISDMVLL 182

Query: 325 ---PDSLCRDLSILST 337
              P+ L  D  +L+ 
Sbjct: 183 DELPEELKNDSELLAG 198


>gi|51891212|ref|YP_073903.1| putative protoporphyrinogen oxidase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51854901|dbj|BAD39059.1| putative protoporphyrinogen oxidase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 305

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 22/114 (19%)

Query: 195 NVHMLEWVLAATKGIQGD------LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEA 246
              ++E  +A   G   +      + ++  G+G  ++ +A      +V+AV+++  ++  
Sbjct: 113 TAALVEQAVARLTGGAAEARGVLRVADIGTGSGAIAVAVAHLLPHAQVVAVDLSPEALAV 172

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           A  N   N V     VR    +    +  E              RF  I  +PP
Sbjct: 173 AAENARLNGV--ADRVRFRQGDLLAPLAEE------------GGRFAAILSNPP 212


>gi|315032690|gb|EFT44622.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0017]
 gi|315143715|gb|EFT87731.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX2141]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKKNAQ 156

Query: 253 ANHVNNVKIVRMS 265
               + ++    +
Sbjct: 157 VLGAD-IEFYHGN 168


>gi|307728967|ref|YP_003906191.1| methyltransferase type 11 [Burkholderia sp. CCGE1003]
 gi|307583502|gb|ADN56900.1| Methyltransferase type 11 [Burkholderia sp. CCGE1003]
          Length = 250

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L  +  A     G  +L++ CG G+ S  +A H   V+A +IA P +           + 
Sbjct: 30  LRTLADAVAATPGATVLDMGCGAGHASFAVAPHAKEVVAYDIAAPMLATVEGAAKERGLA 89

Query: 258 NVKIVRMSSKEF 269
           N++  + +++  
Sbjct: 90  NIRTQQGAAESL 101


>gi|182433848|ref|YP_001821567.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|182440875|ref|YP_001828594.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178462364|dbj|BAG16884.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178469391|dbj|BAG23911.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 238

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 13/116 (11%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A  G    +L+L CG G  +  L  A     V  V+ +   +E A    A   + +V+ V
Sbjct: 44  ADGGAGLRVLDLGCGTGASTEALIAAAPLASVTGVDASAGMLERA---AAKPGLTHVQFV 100

Query: 263 RMSSKEFT--------QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             S++            A+     F  ++D D      + + V   R  + + T+G
Sbjct: 101 HASAEALADRLAPGSFDAVFAGYLFRNVQDADAVLGLVRRLLVPSGRLAVHEYTLG 156


>gi|222055130|ref|YP_002537492.1| methyltransferase type 11 [Geobacter sp. FRC-32]
 gi|221564419|gb|ACM20391.1| Methyltransferase type 11 [Geobacter sp. FRC-32]
          Length = 234

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           +  L++   G G F++  A    RV AV++++  ++ A        V N+     
Sbjct: 55  EHTLIDFGSGTGTFAIEAALRCARVHAVDVSREMIDCAATKAMKAGVTNLHFHHA 109


>gi|26988713|ref|NP_744138.1| UbiE/COQ5 family methlytransferase [Pseudomonas putida KT2440]
 gi|24983503|gb|AAN67602.1|AE016390_1 methlytransferase, UbiE/COQ5 family [Pseudomonas putida KT2440]
 gi|218684453|gb|ACL01080.1| unknown [Pseudomonas putida]
          Length = 254

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                     +L+L CG G+ S  +A     V+A ++++  ++      A   + N+   
Sbjct: 38  AELAGQAHARVLDLGCGAGHVSFHVAPLVAEVVAYDLSQSMLDVVASAAAERGLANITTE 97

Query: 263 RMSSKEFTQA 272
           R +++    A
Sbjct: 98  RGAAERLPFA 107


>gi|186681172|ref|YP_001864368.1| methyltransferase type 11 [Nostoc punctiforme PCC 73102]
 gi|186463624|gb|ACC79425.1| Methyltransferase type 11 [Nostoc punctiforme PCC 73102]
          Length = 441

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L+  CG G  SLVLA      +++ ++I++ S++ A+  +  +  +N +   +  +E  
Sbjct: 61  ILDAGCGTGYKSLVLAEANPGAKIVGIDISEESIKLAQQRLEHHGFDNAEFHVLPIQELP 120

Query: 271 QAMRREREFNRLK----DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           +   +    N  +      D+ +     I V  P   +       +Q +P+ 
Sbjct: 121 KLNYQFDYINCDELLYLFPDLAAALQGMISVLKPNGIIRSNLHSSIQRFPYF 172


>gi|116668686|ref|YP_829619.1| methyltransferase type 12 [Arthrobacter sp. FB24]
 gi|116608795|gb|ABK01519.1| Methyltransferase type 12 [Arthrobacter sp. FB24]
          Length = 273

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 2/94 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L         ++++ CGNG+F+  LA HF   + V+++  +V  AR       + N+   
Sbjct: 62  LRLHLDPGLPIVDIGCGNGSFTRQLAGHFPHAVGVDVSAHAVRRAR--AETAGLANISYA 119

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
                          E   L              
Sbjct: 120 VADMTASGAGSGLLEELAVLDTGGQAGGGANVFI 153


>gi|307330326|ref|ZP_07609472.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
 gi|306884022|gb|EFN15062.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
          Length = 239

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 7/114 (6%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN-------IAAN 254
           +LA        +++L CGNG  +  LA  F R + V++++ +VE AR             
Sbjct: 41  LLAPYADSSLPVVDLGCGNGTQTRYLAARFGRAVGVDLSRAAVEHARRADPAGTAEYRQL 100

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            + +   V   ++    A    R      D        + +     R G     
Sbjct: 101 SLTDAAGVAELARRLGDANVYMRAVIHQSDAVDRHPVAEAVATLLGRRGRGFVV 154


>gi|262165594|ref|ZP_06033331.1| hypothetical protein VMA_002041 [Vibrio mimicus VM223]
 gi|262025310|gb|EEY43978.1| hypothetical protein VMA_002041 [Vibrio mimicus VM223]
          Length = 397

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 30/180 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH       ++   N  KI +D       +    +T  Y    +S  Q  
Sbjct: 163 KEGLEERVGVLHGELPPKSVVIEENGVKINVD-------IVGGHKTGFYLDQRDSRFQ-- 213

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                       +       ++L  +   G F L  L     RV+  ++++P+++ A+ N
Sbjct: 214 ------------SMKYVRDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKLN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              N             +          F  L++      RF  + +DPP+     A + 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTRFDVVVMDPPKFAESKAQLD 313


>gi|290956242|ref|YP_003487424.1| hypothetical protein SCAB_17281 [Streptomyces scabiei 87.22]
 gi|260645768|emb|CBG68859.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 273

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R   NS          ++L  +          +L++ CG G  +  LA      R
Sbjct: 20  RSHTWRTAANS--------AAYLLGSLQPDM-----KILDIGCGPGTITADLAALVPDGR 66

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           V  V+ A   +E AR   A   ++NV       
Sbjct: 67  VTGVDHAPGILEQARATAAGRGLDNVDFAVADV 99


>gi|239831000|ref|ZP_04679329.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|239823267|gb|EEQ94835.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 366

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 55/161 (34%), Gaps = 22/161 (13%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVH--MLEWVLAA--TKGIQGDLLELYCGNGN 222
           E   +    + +     SF           H   ++ ++      G    +L L+   G 
Sbjct: 167 ETWPMQHDGISFHGRFTSFRHVGVFPEQAAHWSYMDGLIRDGVKSGRSVKVLNLFGYTGV 226

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFN 280
            SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F     R   F 
Sbjct: 227 ASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFVAREERRGSF- 285

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHIL 319
                      +  I +DPP  G         + +  P ++
Sbjct: 286 -----------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV 315


>gi|229153492|ref|ZP_04281670.1| Protein hemK [Bacillus cereus m1550]
 gi|228630096|gb|EEK86747.1| Protein hemK [Bacillus cereus m1550]
          Length = 283

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 44/164 (26%)

Query: 164 RDYVDERLTVAGRTLIYRQIEN---------------SFTQPNAGI------NVHM---- 198
           R+ + E    +    I++ +E                SF   N  +         +    
Sbjct: 44  REEITEEQEKSFTEFIHKHVEGIPIQYMIGYEMFYGRSFF-VNEEVLIPRPETEELIVGV 102

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  A   
Sbjct: 103 LERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKALGA 162

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V                      L        +   +  +PP
Sbjct: 163 E-VTFYHGDL---------------LSPFHKTGQKLDVVVSNPP 190


>gi|297563107|ref|YP_003682081.1| methyltransferase small [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296847555|gb|ADH69575.1| methyltransferase small [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 498

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 17/94 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            G     L++  G G  +L LA     V+A ++   +V  A  ++A + V + ++ + S 
Sbjct: 156 DGPVERALDVGTGCGVQALHLASRAREVVATDLNPRAVRLAGISLALSGVTDARLEQGSL 215

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            E                  +   RF  I  +PP
Sbjct: 216 YE-----------------PVAGERFDLIVSNPP 232


>gi|261378642|ref|ZP_05983215.1| protein-(glutamine-N5) methyltransferase [Neisseria cinerea ATCC
           14685]
 gi|269144979|gb|EEZ71397.1| protein-(glutamine-N5) methyltransferase [Neisseria cinerea ATCC
           14685]
          Length = 273

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 61/174 (35%), Gaps = 35/174 (20%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  DEMPDSVRQHADMLVQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E  +       G + +L  G+G  +L +A  R    V A +I+  ++E 
Sbjct: 88  ------TEHLVEAAIGRLPEC-GSIWDLGTGSGAVALTVALERPDAFVRASDISLSALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           AR N A      V+    S   F   M  ER++               I  +PP
Sbjct: 141 ARKNAADLGAA-VEFAHGS--WFDTDMPSERQW-------------DVIVSNPP 178


>gi|254473012|ref|ZP_05086410.1| methyltransferase, UbiE/COQ5 family [Pseudovibrio sp. JE062]
 gi|211957733|gb|EEA92935.1| methyltransferase, UbiE/COQ5 family [Pseudovibrio sp. JE062]
          Length = 210

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 186 SFT--QPNAGINVHM-----LEWVLAA---TKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
            F   Q    +   M      E  +         + ++LEL CG+G+ +++LA+H   + 
Sbjct: 6   GFWDKQAPGYVARPMKDVASYEKAMDRVRSYLTPEQEVLELGCGSGSTAMLLAKHVKHMT 65

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           A +I+   +E  +     + + N+  V   + 
Sbjct: 66  ASDISGKMIEFGQEKAWNDGIENISFVHTPAG 97


>gi|220933438|ref|YP_002512337.1| arsenite S-adenosylmethyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994748|gb|ACL71350.1| arsenite S-adenosylmethyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 272

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 213 LLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +++L  G G F   LA        +V+ V++    V  AR N      NNV+      + 
Sbjct: 88  VVDLGSG-GGFDCFLASAEVGVTGKVIGVDMTPAMVSKARANAEKGGFNNVEFRLGEIEH 146

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTI 295
              A            I++   + +  
Sbjct: 147 LPVADNAADVIISNCVINLSPDKPQVF 173


>gi|187927743|ref|YP_001898230.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           pickettii 12J]
 gi|187724633|gb|ACD25798.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Ralstonia
           pickettii 12J]
          Length = 216

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         D+LE+  G+G  + +LA    +V  ++I    V  AR N+
Sbjct: 63  PRVEARVLQELAVRKHE---DVLEVGAGSGYMAALLAHRGRQVTTLDIVPELVAFARDNL 119

Query: 252 AANHVNNVKIVRMS 265
           + N V NV +V  S
Sbjct: 120 SRNSVTNVDVVEAS 133


>gi|119510216|ref|ZP_01629354.1| hypothetical protein N9414_10538 [Nodularia spumigena CCY9414]
 gi|119465166|gb|EAW46065.1| hypothetical protein N9414_10538 [Nodularia spumigena CCY9414]
          Length = 440

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 12/102 (11%)

Query: 188 TQP-----NAGINVHML--EWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVE 238
           TQP     ++ +N + L  + V+ +   +   +L+  CG+G  SL+LA      ++  V+
Sbjct: 32  TQPKQLYIHSLVNAYYLRNQKVIDSPGKV---ILDAGCGSGYKSLMLAEANPGAKIFGVD 88

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           I+  SV+ AR  +    ++N +   +S ++  +  ++    N
Sbjct: 89  ISAESVKLARQRLEYYGLDNAEFHVLSLEDLPKLNQKFDYIN 130


>gi|110667142|ref|YP_656953.1| S-adenosylmethionine-dependent methyltransferase-like protein
           [Haloquadratum walsbyi DSM 16790]
 gi|109624889|emb|CAJ51298.1| S-adenosylmethionine-dependent methyltransferase homolog
           [Haloquadratum walsbyi DSM 16790]
          Length = 263

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 202 VLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-V 259
           VL +   + G D+LE+ CG G F+ +LA     ++ ++I+   +   R     N VN+ +
Sbjct: 36  VLDSLNPVTGADILEIACGTGRFTAMLAERGANIVGIDISDAMLAQGRRKARNNGVNDTL 95

Query: 260 KIVRMSSKEF 269
           +++R  +   
Sbjct: 96  ELLRGDAARL 105


>gi|30023359|ref|NP_834990.1| modification methylase, HemK family [Bacillus cereus ATCC 14579]
 gi|228961592|ref|ZP_04123201.1| Protein hemK [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229112742|ref|ZP_04242275.1| Protein hemK [Bacillus cereus Rock1-15]
 gi|229130578|ref|ZP_04259534.1| Protein hemK [Bacillus cereus BDRD-Cer4]
 gi|229147869|ref|ZP_04276210.1| Protein hemK [Bacillus cereus BDRD-ST24]
 gi|296505753|ref|YP_003667453.1| modification methylase, HemK family [Bacillus thuringiensis BMB171]
 gi|29898920|gb|AAP12191.1| Methyltransferase [Bacillus cereus ATCC 14579]
 gi|228635519|gb|EEK92008.1| Protein hemK [Bacillus cereus BDRD-ST24]
 gi|228652917|gb|EEL08799.1| Protein hemK [Bacillus cereus BDRD-Cer4]
 gi|228670723|gb|EEL26034.1| Protein hemK [Bacillus cereus Rock1-15]
 gi|228798074|gb|EEM45078.1| Protein hemK [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296326805|gb|ADH09733.1| modification methylase, HemK family [Bacillus thuringiensis BMB171]
          Length = 283

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 44/164 (26%)

Query: 164 RDYVDERLTVAGRTLIYRQIEN---------------SFTQPNAGI------NVHM---- 198
           R+ + E    +    I++ +E                SF   N  +         +    
Sbjct: 44  REEITEEQEKSFTEFIHKHVEGIPIQYMIGYEIFYGRSFF-VNEEVLIPRPETEELIVGV 102

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  A   
Sbjct: 103 LERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKALGA 162

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V                      L        +   +  +PP
Sbjct: 163 E-VTFYHGDL---------------LSPFHKTGQKLDVVVSNPP 190


>gi|88800297|ref|ZP_01115864.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Reinekea sp. MED297]
 gi|88777012|gb|EAR08220.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Reinekea sp. MED297]
          Length = 275

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 31/154 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  +R++    L  A  TLI R                ++E VLA     +   ++L  G
Sbjct: 69  IVGEREFWSLPLKTAPHTLIPRPD-----------TEVLVEQVLADAPDGEYRCVDLGTG 117

Query: 220 NGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G  +L L   R   +V  ++    +V  A  N     ++ V     +            
Sbjct: 118 TGAIALALKSERPKWQVEGIDRVPEAVALATENAQRLGLD-VTFRVGN------------ 164

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                   D+       +  +PP    DD  +  
Sbjct: 165 -----WCADLADDSIDILVSNPPYIDADDEHLSQ 193


>gi|330010291|ref|ZP_08306718.1| 23S rRNA m5C1962 methyltransferase [Klebsiella sp. MS 92-3]
 gi|328534581|gb|EGF61161.1| 23S rRNA m5C1962 methyltransferase [Klebsiella sp. MS 92-3]
          Length = 400

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNF-SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F    L     +V +V+ ++ +++ AR N+  N ++  
Sbjct: 216 RLATRRYVADKRVLNCFSYTGGFAGSALMGGCRQVTSVDTSQEALDVARQNVEINGLD-- 273

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
               +S  EF     R+  F  L+       +F  I +DPP+   +    +G  + Y  I
Sbjct: 274 ----LSKAEFV----RDDVFKLLRKYRDQGEKFDVIVMDPPKFVENKSQLMGACRGYKDI 325


>gi|307297958|ref|ZP_07577762.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916044|gb|EFN46427.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIA 252
              ++E V+   K  +    ++  G+G  +  LAR+     V A +I++ ++  A  N  
Sbjct: 97  TEELVEIVIDEEKNSK-VFADIGTGSGAIACALARNIPSSLVFATDISRDALMLAEKNAR 155

Query: 253 ANHVNNVKIVRMS 265
            N + N++ +   
Sbjct: 156 TNGIFNIRFIEGD 168


>gi|302038102|ref|YP_003798424.1| methyltransferase, ubiE family [Candidatus Nitrospira defluvii]
 gi|300606166|emb|CBK42499.1| Methyltransferase, ubiE family [Candidatus Nitrospira defluvii]
          Length = 273

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                    LL++ CG+G  +L+ A+    V  V+IA   VE A+    A  V N +   
Sbjct: 43  RLQIAPGSRLLDVGCGSGQLALLAAKDGVEVTGVDIAANWVERAQARARAEGV-NARFKV 101

Query: 264 MSSKEF 269
             ++  
Sbjct: 102 ADAEAL 107


>gi|262190339|ref|ZP_06048603.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae CT
           5369-93]
 gi|262033766|gb|EEY52242.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholerae CT
           5369-93]
          Length = 167

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+           L+L+ G+G      A R  ++V  +E+   + +  + N+ 
Sbjct: 16  VKETLFNWLAQEVPN--ARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQ 73

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 74  SLKAENIELIHTDAFTFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 118

Query: 312 VQ-----AYPHILYISC 323
           ++     A   ++YI C
Sbjct: 119 LEQNGWLAPQAMIYIEC 135


>gi|228477567|ref|ZP_04062200.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus salivarius SK126]
 gi|228250711|gb|EEK09909.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus salivarius SK126]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 20/144 (13%)

Query: 133 ECAIRLRDALHARKYQI------QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS 186
              ++LR  +     ++      QL        I    D+   R  V  R LI R     
Sbjct: 38  HFVLQLRQEVSEEDAELLAHAFSQLKKHKPAQYILGYEDFHGLRFQVDERVLIPRPE--- 94

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSV 244
                      +++ +LA     +  +L++  G+G  S+ L  +R   +V A +++  ++
Sbjct: 95  --------TEELVDLILAENPSTELKVLDIGTGSGAISVSLKKSRPLWQVTASDLSVDAI 146

Query: 245 EAARYNIAANHVNNVKIVRMSSKE 268
           E A+ N   N V  +  V+    E
Sbjct: 147 ELAQENAKLNQVA-ISFVQSDVFE 169


>gi|297588454|ref|ZP_06947097.1| ribosomal protein L11 methyltransferase [Finegoldia magna ATCC
           53516]
 gi|297573827|gb|EFH92548.1| ribosomal protein L11 methyltransferase [Finegoldia magna ATCC
           53516]
          Length = 307

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 210 QGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +L++ CG+G  S+  ++     V A +I   ++EA   N   N ++N+K V  S  +
Sbjct: 170 NKSVLDIGCGSGILSVASSKLGAKEVFATDIDPLAIEATLDNAQLNKISNIKAVEGSLLD 229

Query: 269 FTQAMRREREFNRL--------KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP-HIL 319
                      N L         D+     +          +   D  + +++     I+
Sbjct: 230 KVDKKYDVVIANILLNVLDILIPDLPKALEKDGVFICSGLINSQRDNIINILEKNNLEIV 289

Query: 320 YIS 322
            IS
Sbjct: 290 EIS 292


>gi|114769331|ref|ZP_01446957.1| Protein-L-isoaspartate carboxylmethyltransferase [alpha
           proteobacterium HTCC2255]
 gi|114550248|gb|EAU53129.1| Protein-L-isoaspartate carboxylmethyltransferase [alpha
           proteobacterium HTCC2255]
          Length = 218

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 19/130 (14%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             I   ML+ V   ++ +   +L++ CG G  + V+A+    V+A+E      E A+  +
Sbjct: 64  PRIFAKMLDAVSIKSEEL---VLDVACGTGYSTAVIAKLAQAVVALESDNKLAEFAQKAL 120

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               V+N  ++                +  L++ D     +  I ++     L +     
Sbjct: 121 EDEGVDNAIVI----------------YGELQNGDEKHGLYDVIIIEGGVQKLSEDLKTQ 164

Query: 312 VQAYPHILYI 321
           ++    I+ I
Sbjct: 165 LKDGGRIICI 174


>gi|46581153|ref|YP_011961.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450574|gb|AAS97221.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Desulfovibrio vulgaris str. Hildenborough]
          Length = 486

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 20/149 (13%)

Query: 183 IENSFTQPNAGINVHMLEW------VLAATKGIQGDLLELYCGNGNFSLVLARHFDR--V 234
           + ++F    A     + +W      + A        + ++  G+G  S+  A    R  V
Sbjct: 292 MPDTFF---AAEAGLLTKWPVRAVALAALRVNPADTVWDVGAGSGAMSVECAAVASRGSV 348

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            AVE     V     N       N+++V   +     ++           +   S     
Sbjct: 349 WAVERDAARVVCVEENRRRMGAANIEVVHGDAPACLASLPTPDRVFMGGGLGGISADASC 408

Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISC 323
             +              +     ++ ++C
Sbjct: 409 PVL--------HTVCERLAPGGRVV-VAC 428


>gi|330720240|gb|EGG98608.1| Transcriptional regulator2C ArsR family / Methyltransferase fusion
           [gamma proteobacterium IMCC2047]
          Length = 336

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N+    +  + V           +E+  G G++  +LA  F +V A++ +   +  AR  
Sbjct: 152 NSQYVRNATDLVKLTGLPDNATAIEIGPGEGHYLPLLAERFRQVHAIDNSPAMLAQARQL 211

Query: 251 IAANHVNNVKIVRMSSKEFTQ 271
            A   + N+  +   + E  Q
Sbjct: 212 AADKQLTNINFILGEASEAIQ 232


>gi|328951854|ref|YP_004369188.1| Methyltransferase type 11 [Desulfobacca acetoxidans DSM 11109]
 gi|328452178|gb|AEB08007.1| Methyltransferase type 11 [Desulfobacca acetoxidans DSM 11109]
          Length = 296

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 197 HMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            M++ +L  T+  +    +LE+  G G F++ LA+   RV  ++ +   +   R+N+   
Sbjct: 54  AMVDDLLRRTQTHESIRSVLEIGAGTGVFTIPLAKRVPRVTVIDPSPGMLGVLRHNLKLE 113

Query: 255 HVNNVKIVRMS 265
           +++NV+I+  S
Sbjct: 114 NLSNVEIIEGS 124


>gi|228968457|ref|ZP_04129446.1| Protein hemK [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228791237|gb|EEM38850.1| Protein hemK [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 283

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 44/164 (26%)

Query: 164 RDYVDERLTVAGRTLIYRQIEN---------------SFTQPNAGI------NVHM---- 198
           R+ ++E    +    I++ +E                SF   N  +         +    
Sbjct: 44  REEINEEQEASFTEFIHKHVEGIPIQYMIGYEMFYGRSFF-VNEEVLIPRPETEELIVGV 102

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  A   
Sbjct: 103 LERIERHFGDKELHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKALGA 162

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V                      L        +   +  +PP
Sbjct: 163 E-VTFYHGDL---------------LSPFHKAGQKLDVVVSNPP 190


>gi|229029808|ref|ZP_04185879.1| Methyltransferase [Bacillus cereus AH1271]
 gi|228731523|gb|EEL82434.1| Methyltransferase [Bacillus cereus AH1271]
          Length = 206

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E ++         +L+L CG G+ S  L  +   V  ++ +   +E AR N       +
Sbjct: 1   MEKLVLQYAPPHSHILDLCCGTGHLSKKLIDNTFVVTGIDGSAQMIEYARQNA-----PD 55

Query: 259 VKIVRMSSKEF 269
              +   ++ F
Sbjct: 56  ATFIVDDARYF 66


>gi|297562502|ref|YP_003681476.1| methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846950|gb|ADH68970.1| Methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 259

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 190 PNAGINVHM---LEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSV 244
            N G + H+      +     G    LL+L CG G  +  L  A    R+ AV+ +   +
Sbjct: 30  ANPGYHAHLRVSARRLGLPWDGTGLRLLDLGCGTGASTAALLRALPRARIAAVDASPGML 89

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           EAAR   A     +V   R  +++ T    R      +  +    +    I   P    L
Sbjct: 90  EAAR---AKRWPESVSFHRARAEDLTPEWARRHVGGPVDAV----FGAYLIRNCPDPDAL 142

Query: 305 DDATVGMVQAYPHIL 319
             +   +++    ++
Sbjct: 143 LASVRALLKPGGRVV 157


>gi|183982054|ref|YP_001850345.1| methyltransferase [Mycobacterium marinum M]
 gi|183175380|gb|ACC40490.1| methyltransferase [Mycobacterium marinum M]
          Length = 249

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++E ++A    ++G++L+   G G+ ++  A        ++ +  ++E AR N A   V+
Sbjct: 39  VVEQLVAL-GAVKGEVLDPGTGPGHHAIYYASKGYSATGIDGSATAIERARDNAAKAGVS 97

Query: 258 NVKIVRMSSKEF 269
            V      +   
Sbjct: 98  -VNFQVADATRL 108


>gi|118618639|ref|YP_906971.1| methyltransferase [Mycobacterium ulcerans Agy99]
 gi|118570749|gb|ABL05500.1| methyltransferase [Mycobacterium ulcerans Agy99]
          Length = 249

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++E ++A    ++G++L+   G G+ ++  A        ++ +  ++E AR N A   V+
Sbjct: 39  VVEQLVAL-GAVKGEVLDPGTGPGHHAIYYASKGYSATGIDGSATAIERARDNAAKAGVS 97

Query: 258 NVKIVRMSSKEF 269
            V      +   
Sbjct: 98  -VNFQVADATRL 108


>gi|330830946|ref|YP_004393898.1| ribosomal protein L11 methyltransferase [Aeromonas veronii B565]
 gi|328806082|gb|AEB51281.1| Ribosomal protein L11 methyltransferase [Aeromonas veronii B565]
          Length = 292

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W+       +  +++  CG+G   +  L     RV+ ++I   +++A+R N A N V 
Sbjct: 147 LQWLDGLDLAGK-TVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRDNAARNGVA 205

Query: 258 N 258
           +
Sbjct: 206 D 206


>gi|260913362|ref|ZP_05919843.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260632593|gb|EEX50763.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 270

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 14/127 (11%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N ++  +V          LL++ CG G   L +A    +V  ++ ++  +   +      
Sbjct: 49  NEYVRAFVSRMDLSNADTLLDVGCGGGAIVLSVASQLRQVYGLDYSEGMLSVLQQRAQNL 108

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            ++NV+ +R S          E  ++ + + DI      ++  D     LD A   +   
Sbjct: 109 GLDNVQSIRKS---------WEENWDDVPECDICVSSRSSMVAD-----LDKALDKLNAK 154

Query: 315 YPHILYI 321
               +Y+
Sbjct: 155 ARKAVYM 161


>gi|302522132|ref|ZP_07274474.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB78]
 gi|318056543|ref|ZP_07975266.1| hypothetical protein SSA3_01277 [Streptomyces sp. SA3_actG]
 gi|318076717|ref|ZP_07984049.1| hypothetical protein SSA3_08332 [Streptomyces sp. SA3_actF]
 gi|302431027|gb|EFL02843.1| RsmD family RNA methyltransferase [Streptomyces sp. SPB78]
          Length = 195

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 15/114 (13%)

Query: 201 WVLAATKGIQGD-LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           W       + G+ +L+LY G+G   L  L+R     L VE    +V   R N+    +  
Sbjct: 37  WEALLGGPLDGERVLDLYGGSGAVGLEALSRGAAHALLVESDARAVRTIRANVRDLGLTG 96

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            ++    + +                    S  +  +F+DPP +  D     ++
Sbjct: 97  AEVRPGKAAQIVAG-------------PPPSAPYDLVFLDPPYAVSDAELGEIL 137


>gi|229549321|ref|ZP_04438046.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis ATCC 29200]
 gi|255972030|ref|ZP_05422616.1| modification methylase HemK [Enterococcus faecalis T1]
 gi|256957797|ref|ZP_05561968.1| modification methylase HemK [Enterococcus faecalis DS5]
 gi|257079735|ref|ZP_05574096.1| modification methylase HemK [Enterococcus faecalis JH1]
 gi|294779687|ref|ZP_06745077.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis PC1.1]
 gi|300861227|ref|ZP_07107314.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis TUSoD Ef11]
 gi|307270730|ref|ZP_07552021.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX4248]
 gi|312953587|ref|ZP_07772424.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0102]
 gi|229305558|gb|EEN71554.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis ATCC 29200]
 gi|255963048|gb|EET95524.1| modification methylase HemK [Enterococcus faecalis T1]
 gi|256948293|gb|EEU64925.1| modification methylase HemK [Enterococcus faecalis DS5]
 gi|256987765|gb|EEU75067.1| modification methylase HemK [Enterococcus faecalis JH1]
 gi|294453241|gb|EFG21653.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis PC1.1]
 gi|300850266|gb|EFK78016.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis TUSoD Ef11]
 gi|306513040|gb|EFM81681.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX4248]
 gi|310628425|gb|EFQ11708.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0102]
 gi|315035853|gb|EFT47785.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0027]
 gi|315151854|gb|EFT95870.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0031]
 gi|323481493|gb|ADX80932.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Enterococcus faecalis 62]
 gi|327535787|gb|AEA94621.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           OG1RF]
 gi|329578087|gb|EGG59500.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1467]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEKALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|229050999|ref|ZP_04194548.1| Protein hemK [Bacillus cereus AH676]
 gi|228722376|gb|EEL73772.1| Protein hemK [Bacillus cereus AH676]
          Length = 283

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 44/164 (26%)

Query: 164 RDYVDERLTVAGRTLIYRQIEN---------------SFTQPNAGI------NVHM---- 198
           R+ + E    +    I++ +E                SF   N  +         +    
Sbjct: 44  REEITEEQEKSFTEFIHKHVEGIPIQYMIGYEMFYGRSFF-VNEEVLIPRPETEELIVGV 102

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  A   
Sbjct: 103 LERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKALGA 162

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V                      L        +   +  +PP
Sbjct: 163 E-VTFYHGDL---------------LSPFHKTGQKLDVVVSNPP 190


>gi|291294804|ref|YP_003506202.1| SAM-dependent methyltransferase [Meiothermus ruber DSM 1279]
 gi|290469763|gb|ADD27182.1| SAM-dependent methyltransferase [Meiothermus ruber DSM 1279]
          Length = 385

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 84/261 (32%), Gaps = 41/261 (15%)

Query: 61  IMFDQQTKERMRIDYFMPGSLL----INALMIEMMATIRLEPLLRAKLFQIDYLTS---- 112
             +D Q++  +R+  F  G L     +           +L+P  R    + D L      
Sbjct: 49  GYYDPQSRVAVRVYRFDEGPLDKRFFLQRFERAQKKRAQLDPFHRLVHAEADGLPGLVVD 108

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDE--- 169
           +    +V  + +R ++         L +AL       +    + + +   +R  V     
Sbjct: 109 RFGGVLVVQVRNRAMEALRAHWLPALIEALQPASIYERSDVDSRRQEGLPERVGVLYGEA 168

Query: 170 --RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV--------LAATKGIQGDLLELYCG 219
              L V    L+++            +      ++        L    G    +L++Y  
Sbjct: 169 PSVLEVQEDGLVFQIPL--------ALAQKTGYYLDQRENRRRLEQVVGPGERVLDVYSY 220

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
            G F+L  AR     LAV+    ++       +   +  V I +  +    + + R +  
Sbjct: 221 VGAFALRAARKGAYALAVDKDLDALAVLDRAASMQGLR-VDIRQGDAVAVLEDLARGKTP 279

Query: 280 NRLKDIDIHSYRFKTIFVDPP 300
                       F+ + +DPP
Sbjct: 280 P-----------FRHVLLDPP 289


>gi|224001086|ref|XP_002290215.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220973637|gb|EED91967.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 376

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 213 LLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-----IVRMSS 266
           + + +CG G   +  A     RV+A ++   +V   + + A N ++  +     + R  +
Sbjct: 200 IADAFCGVGALCIRAALAKGCRVVANDLNPDAVAYCKDSAAKNGIDVTQREMFSVQRGDA 259

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           ++F   +      +        S     + ++ P      + +  ++ +P
Sbjct: 260 RDFIMNLGMGVAESSTTAEASASNLPHHLILNFPLD--SPSFLNALRWWP 307


>gi|116619693|ref|YP_821849.1| type 12 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222855|gb|ABJ81564.1| Methyltransferase type 12 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 281

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
             +LE+ CG G  ++  ARH  +V AV++ + S+E AR       + + ++ ++ ++++ 
Sbjct: 65  KKVLEIGCGIGTDTINFARHGAQVTAVDLTEKSLEVARQRAKVFGLEDRIRFIQANAEKL 124

Query: 270 TQAMRRER 277
           ++++  E+
Sbjct: 125 SESVPLEQ 132


>gi|320587333|gb|EFW99813.1| methyltransferase type 11 [Grosmannia clavigera kw1407]
          Length = 301

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR 229
           +    R   Y    N+F  P       M   +L       G  +++  CG G+ +L +AR
Sbjct: 37  ILGGTRHFGYYDSPNAFPLPFGCALRRMEAKLLEFLALPAGSQIMDAGCGVGHVALYMAR 96

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHV 256
           H  RV A+++    +  A+ N+   H+
Sbjct: 97  HGMRVTAIDVVDRHIVKAKRNVQKAHL 123


>gi|227534917|ref|ZP_03964966.1| methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227187673|gb|EEI67740.1| methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 244

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +++L  GNG   L LAR    +V  VE+     + A+ ++A N + NV +  
Sbjct: 39  AQVKRHSRVVDLAAGNGAVGLFLARDTDQQVTMVELQPRLADMAKRSVALNQLQNVTVQV 98

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
               + TQ + ++                  +  +PP   +   ++
Sbjct: 99  GDLADATQMVAKD--------------SVDIVTCNPPYFKVSSQSI 130


>gi|167837954|ref|ZP_02464813.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           MSMB43]
          Length = 300

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+      V  ++I   +VEAAR N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGSVTGIDIDPQAVEAARQNSERNRT 213

Query: 257 NNVKIVRMSSKE 268
           +    +     +
Sbjct: 214 DVAYGLPGDCPD 225


>gi|119775697|ref|YP_928437.1| hemK family protein [Shewanella amazonensis SB2B]
 gi|119768197|gb|ABM00768.1| hemK family protein [Shewanella amazonensis SB2B]
          Length = 285

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 30/183 (16%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W E  +      H  +   +         I  +R++   +  V   TLI R         
Sbjct: 47  WPERPLTSEQWKHFEQLINRRAKGVPVAHILGEREFWSLKFLVNETTLIPRPD------- 99

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
                  ++E  L         +L++  G G  +L LA  R   R+ A++    +V  A+
Sbjct: 100 ----TEMLVETALNLPLPDNARVLDMGTGTGAIALALASERPNWRITALDKVDDAVALAK 155

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N     ++ V+I++               F+ ++D D     F  I  +PP     D  
Sbjct: 156 ANREQLGLSQVEILQSD------------WFSAVRDAD-----FDLIVSNPPYIDEHDEH 198

Query: 309 VGM 311
           + M
Sbjct: 199 LAM 201


>gi|313499905|gb|ADR61271.1| UbiE/COQ5 family methyltransferase [Pseudomonas putida BIRD-1]
          Length = 254

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                     +L+L CG G+ S  +A     V+A ++++  ++      A   + N+   
Sbjct: 38  AELAGQAHARVLDLGCGAGHVSFHVAPLVAEVVAYDLSQSMLDVVASAAAERGLANITTE 97

Query: 263 RMSSKEFTQA 272
           R +++    A
Sbjct: 98  RGAAERLPFA 107


>gi|308070484|ref|YP_003872089.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681]
 gi|305859763|gb|ADM71551.1| SAM-dependent methyltransferase [Paenibacillus polymyxa E681]
          Length = 261

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
             ++ + ++ L      L+Y+  +    Q        M+ W+          +L+L CG 
Sbjct: 4   WYEQSFGEDYL------LVYKHRD---FQGAYQEVQKMISWL---KLPQGSSVLDLCCGM 51

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G  SL LA    +V  V+++   +  AR   AA+    V   +   +E 
Sbjct: 52  GRHSLALADAGYKVTGVDLSNVLLREAR---AADSEGRVSWHQGDMREV 97


>gi|302547282|ref|ZP_07299624.1| putative methyltransferase protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302464900|gb|EFL27993.1| putative methyltransferase protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 251

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 57/168 (33%), Gaps = 26/168 (15%)

Query: 192 AGINVHMLEWVLAATKGIQ--GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
                  L  +LAA  G+   GD+LEL CG G ++  LA     V AV+ A   V     
Sbjct: 56  PYAEREELRELLAAVDGLPVAGDVLELACGTGQWTPRLAARARSVTAVDAAAE-VLDLAR 114

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDAT 308
              A+    V+ V+        A R  R ++ +      S+        P R  G  D  
Sbjct: 115 ARTASASRAVRFVQAD----LFAWRPPRRYDTVFFAFWLSHVP------PARLPGFWDTV 164

Query: 309 VGMVQAYPHILYISCNPDS-----LCR-----DLSILSTT--HTIERL 344
              +      +++   P +     L        L  L     + I ++
Sbjct: 165 AAALAPGGKAIFVDDGPAAAEEEVLADQPAPAALRRLDDGSRYRIVKV 212


>gi|269968786|ref|ZP_06182775.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269826598|gb|EEZ80943.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 437

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E    +   LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 203 KEGLKEITGVLHGEEPPQSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 250

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                   +  +   KG   ++L  +   G F L  L     RV+  ++++P+++ A++N
Sbjct: 251 -------RQQAMKYMKG--KEVLNCFSYTGGFGLYALKGDAKRVINADVSQPALDTAKFN 301

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 302 AELND--------FDISKKRAVFLNADVFKLLREYRDQGTQFDVVIMDPPKFAESKAQLN 353

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 354 GACRGYKDI 362


>gi|262370969|ref|ZP_06064292.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter johnsonii
           SH046]
 gi|262314045|gb|EEY95089.1| 3-demethylubiquinone-9 3-methyltransferase [Acinetobacter johnsonii
           SH046]
          Length = 238

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +  AR +  
Sbjct: 34  INPLRLNWIDEHAGGLNGKKVLDVGCGGGILAESMARRGANVLGIDMGEAPLNVARLHAE 93

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
              V +++  ++  ++  +    + +     ++  H     +I 
Sbjct: 94  QEGVEHIEYRQIPVEQLAEEQAGQYDVVTCMEMLEHVPNPASII 137


>gi|262172902|ref|ZP_06040580.1| ribosomal RNA small subunit methyltransferase D [Vibrio mimicus
           MB-451]
 gi|261893978|gb|EEY39964.1| ribosomal RNA small subunit methyltransferase D [Vibrio mimicus
           MB-451]
          Length = 161

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G      A R   +V  +E+   +    + N+ 
Sbjct: 8   VKETLFNWLAQEVP--QSRCLDLFAGSGGLGFECASRQASQVTMLELNPLAFNQLKTNVQ 65

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 66  SLKAENIELIHTDALAFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 110

Query: 312 VQAYPH-----ILYISC 323
           ++         ++YI C
Sbjct: 111 LEQNGWLSSQAMIYIEC 127


>gi|258622825|ref|ZP_05717842.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584886|gb|EEW09618.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 199

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G      A R   +V  +E+   +    + N+ 
Sbjct: 46  VKETLFNWLAQEVP--QSRCLDLFAGSGGLGFECASRQASQVTMLELNPLAFNQLKTNVQ 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 104 SLKAENIELIHTDALAFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 148

Query: 312 VQAYPH-----ILYISC 323
           ++         ++YI C
Sbjct: 149 LEQNGWLSPQAMIYIEC 165


>gi|255282740|ref|ZP_05347295.1| methyltransferase [Bryantella formatexigens DSM 14469]
 gi|255266761|gb|EET59966.1| methyltransferase [Bryantella formatexigens DSM 14469]
          Length = 259

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L+L CGNG  S VLA     V  ++ ++  +  AR N        ++  R  + +FT
Sbjct: 36  VLDLGCGNGALSKVLAEKGLIVTGMDASEDMLAVARKN-----CPGIRFHRADATDFT 88


>gi|213691917|ref|YP_002322503.1| Methylase of polypeptide chain release factors-like protein
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523378|gb|ACJ52125.1| Methylase of polypeptide chain release factors-like protein
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458019|dbj|BAJ68640.1| hypothetical protein BLIJ_1052 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 378

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 201 WVLAATKGIQG---DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + LA   G      ++L+   G G   L+ A H   V AVE+   + E +  N   N ++
Sbjct: 132 YALACRLGTAPSRNNVLDYCAGPGIQGLLSASHGAHVTAVEVNPLASELSLCNARLNKLD 191

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N+  V   S    ++           + D+ + RF  I  +PP
Sbjct: 192 NLFNVINKS--VIES-----------ETDLKNLRFDFICANPP 221


>gi|209524236|ref|ZP_03272786.1| magnesium protoporphyrin O-methyltransferase [Arthrospira maxima
           CS-328]
 gi|209495327|gb|EDZ95632.1| magnesium protoporphyrin O-methyltransferase [Arthrospira maxima
           CS-328]
          Length = 229

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 19/143 (13%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA---RYNIAAN 254
           ++EW+ A        + +  CG G+ S+ L      V A +I++  V  A     N    
Sbjct: 49  VIEWLQADGNLGGLMVCDAGCGVGSLSIPLGDAGAIVSASDISEKMVAEASQRARNQLIT 108

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
             +N+  +    ++ T                 H+     + +  P++   +    +   
Sbjct: 109 RASNINFMAQDLEKLTGRY--------------HTVICLDVLIHYPQNQAAEMISHLCSL 154

Query: 315 YPHILYISCNPDSLCRDLSILST 337
             + + +S  P +L   LSIL  
Sbjct: 155 AENRIILSFAPKTLA--LSILKK 175


>gi|182434157|ref|YP_001821876.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178462673|dbj|BAG17193.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 254

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 17/162 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           ++  A +     +L++ CG G F+L+LA     V+ V+ A+ SV+ AR   A      V+
Sbjct: 28  YLRRAQELRARQVLDIGCGTGVFALLLAGRGVDVVGVDPAQASVDVAR---AKPGSARVR 84

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            +   +        R        ++        T                 ++   H+++
Sbjct: 85  WICGDATALPP--LRVDLATMTANVAQEIVDPDTWQKT------LQGAYDALRPGGHLVF 136

Query: 321 ISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLL 362
            + +P     +      ++ + ++      P T  +E  V L
Sbjct: 137 ETRDPARRAWEAWTREHSYRVTQI------PGTGSVESWVQL 172


>gi|193203170|ref|NP_001122517.1| hypothetical protein T08G11.4 [Caenorhabditis elegans]
 gi|159572236|emb|CAP19342.1| C. elegans protein T08G11.4b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 495

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAM 273
           + + G G  ++  A     V+A+++    ++ AR N     V N +  +     +     
Sbjct: 325 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVENYIDFICADFFDVAATW 384

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +++          + +   +F+ PP  G
Sbjct: 385 QADKKL---------APKVDAVFLSPPWGG 405


>gi|297162831|gb|ADI12543.1| putative methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 241

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            ++  A +     +L++ CG G F+L+LA     V+ V+ A+ S++ AR   A      V
Sbjct: 27  AYIQMAEEFTAHRVLDIGCGTGVFALLLADRGIEVVGVDPAQASIDVAR---AKPGSERV 83

Query: 260 KIVRMSSKEFTQ 271
           + +   +     
Sbjct: 84  RWICGDATALPP 95


>gi|261252916|ref|ZP_05945489.1| hypothetical protein VIA_002941 [Vibrio orientalis CIP 102891]
 gi|260936307|gb|EEX92296.1| hypothetical protein VIA_002941 [Vibrio orientalis CIP 102891]
          Length = 397

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 30/172 (17%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   +    LH  +    ++   N  KI +D       +    +T  Y    +S  Q  
Sbjct: 163 KEGLEQTTGVLHGEEPPKSVVIEENGVKISVD-------IIDGHKTGFYLDQRDSRLQ-- 213

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                       +       ++L  +   G F L  L     RV+  ++++P+++ A+YN
Sbjct: 214 ------------SMKYVQDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKYN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
              N             +          F  L++      +F  + +DPP+ 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKF 305


>gi|218553508|ref|YP_002386421.1| putative metallothionein SmtA [Escherichia coli IAI1]
 gi|218360276|emb|CAQ97826.1| putative AdoMet-dependent methyltransferase [Escherichia coli IAI1]
          Length = 261

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +I+   ++ A+    A  V +
Sbjct: 34  LDHVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDISAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|91782158|ref|YP_557364.1| protein-L-isoaspartate(D-aspartate)O- methyltransferase
           [Burkholderia xenovorans LB400]
 gi|296162020|ref|ZP_06844819.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. Ch1-1]
 gi|91686112|gb|ABE29312.1| Protein-L-isoaspartate(D-aspartate)O- methyltransferase
           [Burkholderia xenovorans LB400]
 gi|295887764|gb|EFG67583.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. Ch1-1]
          Length = 217

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +          +LE+  G+G  + +LA     VL V+I     E A+ N+
Sbjct: 63  PRVEARVLQELAVKKHES---VLEIGAGSGYMAALLAHRAQHVLTVDIEPELAELAKTNL 119

Query: 252 AANHVNNVKIVRMSS 266
            AN V N ++    +
Sbjct: 120 IANGVLNAEVATGDA 134


>gi|328956620|ref|YP_004374006.1| putative methyltransferase [Carnobacterium sp. 17-4]
 gi|328672944|gb|AEB28990.1| putative methyltransferase [Carnobacterium sp. 17-4]
          Length = 258

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
            L  D   ++L     ++I      SF      ++  +L       K  +  +++L  GN
Sbjct: 12  WLQGDERMDQLLSHNLSIIQSPSVFSF-----SLDAVLLADFAQPAKHNRAKVVDLCAGN 66

Query: 221 GNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRERE 278
           G   L+L++     ++ +EI +  V  A+  I  N + + V I+     E ++ ++++  
Sbjct: 67  GVVGLLLSQKTSSPIVGIEIQERLVGMAKRTIQLNELEHQVSIIHGDLSEASKWIQKDT- 125

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                          T+  +PP   + + ++ 
Sbjct: 126 -------------VDTLTCNPPYFAVGEKSIK 144


>gi|323159548|gb|EFZ45528.1| protein smtA [Escherichia coli E128010]
 gi|323165392|gb|EFZ51179.1| protein smtA [Shigella sonnei 53G]
 gi|323175456|gb|EFZ61051.1| protein smtA [Escherichia coli 1180]
 gi|332093476|gb|EGI98534.1| protein smtA [Shigella boydii 3594-74]
 gi|332762692|gb|EGJ92955.1| protein smtA [Shigella flexneri K-671]
 gi|332767870|gb|EGJ98060.1| methyltransferase domain protein [Shigella flexneri 2930-71]
 gi|333008905|gb|EGK28365.1| protein smtA [Shigella flexneri K-272]
 gi|333019982|gb|EGK39253.1| protein smtA [Shigella flexneri K-304]
 gi|333020215|gb|EGK39485.1| protein smtA [Shigella flexneri K-227]
          Length = 230

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|311070335|ref|YP_003975258.1| hypothetical protein BATR1942_17040 [Bacillus atrophaeus 1942]
 gi|310870852|gb|ADP34327.1| hypothetical protein BATR1942_17040 [Bacillus atrophaeus 1942]
          Length = 229

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 25/169 (14%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           ++L    G    +L++ CG GN    L      V  +E    + E A      N + +V 
Sbjct: 23  YLLKKINGHWKTVLDVGCGTGNLGEALQDQGITVYGIEAFPDAAEQAE-----NKLAHV- 76

Query: 261 IVRMSSKEFTQAMRREREFNRL-KDIDIHSYRFKTIF-VDPPRSGLDDATVGMVQAYPHI 318
            +    +        E+    L  D+  H     ++     P    D   +  V    HI
Sbjct: 77  -LCGDIERLALPYEPEQFDCILFGDVLEHLVNPWSVLENLRPHLKKDGTVLACVPNVGHI 135

Query: 319 LYISCNPDSLCRDLSILSTTHTIERLALFDQ----FPYTRHMECGVLLV 363
             +          L +L+   T  +  L DQ    F +T H E   L  
Sbjct: 136 SVV----------LELLAGKWTYTKAGLMDQTHLRF-FTLH-ELYALFT 172


>gi|323525080|ref|YP_004227233.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1001]
 gi|323382082|gb|ADX54173.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1001]
          Length = 217

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 161 CLDRDYVDERLTVAGRTLI---YRQIENSFTQPNAGINVHMLE------WVLAATKGIQG 211
            LD+D ++    V     +   YR++  +  +       HML        +         
Sbjct: 20  VLDQDVLNLLSIVKRENFVPAAYRELAFADFEVPLPAGQHMLAPRVEARVLQELAVKKHE 79

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            +LE+  G+G  + +LA     VL V+I     E A+ N+ AN V NV++    
Sbjct: 80  SVLEIGAGSGYMAALLAHRAQHVLTVDIEPELAELAKTNLIANGVLNVEVATGD 133


>gi|302144138|emb|CBI23243.3| unnamed protein product [Vitis vinifera]
          Length = 1013

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           I+  + D+ W   A  L     AR+ ++   G  + T   L  D         G    + 
Sbjct: 769 IWDSIGDELWPIIAKSLNTCRLARQGRVAPSGTRDSTLEILVGDNGWVDHCENGILYSFD 828

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVE 238
             +  F+        ++ E +       + +++ +L+ G G F L   ++     V A E
Sbjct: 829 ATKCMFS------WGNLSEKLRMGCLNCRDEVIVDLFAGIGYFVLPFLVSAKAKLVYACE 882

Query: 239 IAKPSVEAARYNIAANHVNNVKIV 262
               +VEA ++N+ AN V +  I+
Sbjct: 883 WNPHAVEALQHNLLANSVADRCII 906


>gi|225444519|ref|XP_002268884.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1018

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR 181
           I+  + D+ W   A  L     AR+ ++   G  + T   L  D         G    + 
Sbjct: 774 IWDSIGDELWPIIAKSLNTCRLARQGRVAPSGTRDSTLEILVGDNGWVDHCENGILYSFD 833

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVE 238
             +  F+        ++ E +       + +++ +L+ G G F L   ++     V A E
Sbjct: 834 ATKCMFS------WGNLSEKLRMGCLNCRDEVIVDLFAGIGYFVLPFLVSAKAKLVYACE 887

Query: 239 IAKPSVEAARYNIAANHVNNVKIV 262
               +VEA ++N+ AN V +  I+
Sbjct: 888 WNPHAVEALQHNLLANSVADRCII 911


>gi|187922961|ref|YP_001894603.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia phytofirmans PsJN]
 gi|187714155|gb|ACD15379.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia phytofirmans PsJN]
          Length = 217

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +          +LE+  G+G  + +LA     VL V+I     E A+ N+
Sbjct: 63  PRVEARVLQELAVKKHES---VLEIGAGSGYMAALLAHRAQHVLTVDIEPELAELAKSNL 119

Query: 252 AANHVNNVKIVRMSS 266
            AN V N ++    +
Sbjct: 120 IANGVLNAEVATGDA 134


>gi|170720736|ref|YP_001748424.1| type 11 methyltransferase [Pseudomonas putida W619]
 gi|169758739|gb|ACA72055.1| Methyltransferase type 11 [Pseudomonas putida W619]
          Length = 254

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +L+L CG G+ S  +A     V+A ++++  ++      A   + N+   R +++  
Sbjct: 45  AARVLDLGCGAGHVSFHVAPLVAEVVAYDLSQSMLDVVASAAAERGLGNITTERGAAERL 104

Query: 270 TQA 272
             A
Sbjct: 105 PFA 107


>gi|153951908|ref|YP_001398695.1| hypothetical protein JJD26997_1721 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939354|gb|ABS44095.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 239

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA+    +LA++ A   +E  + +    + NN+K   +S + 
Sbjct: 37  QDKSIIDIGCGTGVWTLHLAKEAKEILALDSANAMLEILQEDAKKLNFNNIKCENLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|77463859|ref|YP_353363.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           2.4.1]
 gi|126462694|ref|YP_001043808.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558733|ref|ZP_08413055.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           WS8N]
 gi|4490571|emb|CAB38721.1| mg protoporphyrin methyltransferase [Rhodobacter sphaeroides]
 gi|77388277|gb|ABA79462.1| Mg protoporphyrin methyltransferase [Rhodobacter sphaeroides 2.4.1]
 gi|126104358|gb|ABN77036.1| magnesium protoporphyrin O-methyltransferase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332276445|gb|EGJ21760.1| Mg-protoporphyrin IX methyl transferase [Rhodobacter sphaeroides
           WS8N]
          Length = 222

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--SKEF 269
            +L+  CG G  +  LA    +V+AV+I+   VE AR  +   H + V        + + 
Sbjct: 62  RVLDAGCGAGQMTAELAARGAQVMAVDISPQLVEIARKRLPPEHQDRVTFASGDMLADDL 121

Query: 270 --TQAMRREREFNRLKDIDIHS--------YRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                +          D DI +         R   +F   PR+    A   M + +P 
Sbjct: 122 GRFDYVVAMDSLIYYTDADIAAALDRLGARTRHSVVFTVAPRTPFLMAFWTMGKLFPR 179


>gi|320094507|ref|ZP_08026280.1| hypothetical protein HMPREF9005_0892 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978570|gb|EFW10140.1| hypothetical protein HMPREF9005_0892 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 271

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                +     + +L CG G  +L +A    RVLAV+  + +  AA  N+   H +   +
Sbjct: 91  ARRFREAGASFVADLGCGVGGDALAIAGLGLRVLAVDRDQDASAAAAINLR--HFDGANV 148

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +R    E             L   D+       +F DP R 
Sbjct: 149 LRGDVAE-------------LDMEDLRDQGIDAVFADPARR 176


>gi|326315609|ref|YP_004233281.1| 50S ribosomal protein L11 methyltransferase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372445|gb|ADX44714.1| ribosomal protein L11 methyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 293

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    +A   G  G +L+  CG+G  ++  A+     + AV+I   +VE+ R N  A
Sbjct: 149 TTRMCLRWIARHGGGFGRVLDYGCGSGILAIGAAKFGATDIDAVDIDPAAVESTRLNAEA 208

Query: 254 NHVN 257
           N V 
Sbjct: 209 NGVA 212


>gi|238852660|ref|ZP_04643070.1| ribosomal protein L11 methyltransferase [Lactobacillus gasseri
           202-4]
 gi|238834806|gb|EEQ27033.1| ribosomal protein L11 methyltransferase [Lactobacillus gasseri
           202-4]
          Length = 315

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 75/218 (34%), Gaps = 16/218 (7%)

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            I+       L      E      L   +  K+ ++      + + +++     + D+ W
Sbjct: 55  DIENLPKDLELTAYFNYENADKKELVKKITDKIAEMKGYGLNTGEVLIS--TKEVADEDW 112

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
                +     H   +   L              + D++L      L +    ++ TQ  
Sbjct: 113 NTAWQK---YYHVIDFSRHLAIVPEWED--YHPAFPDQKLIRLDPGLAFGTGGHTTTQ-- 165

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
                 ++   +         +L++  G+G  ++  ++     VL  +I+  +V AA+ N
Sbjct: 166 ------LVLLAMERALVKPMSVLDIGTGSGILAIAASKLGASHVLGTDISDEAVTAAKEN 219

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           IA N VNN+ + + +  +           N L DI + 
Sbjct: 220 IALNDVNNINVRKANLLKDIDDKYDLIVANILADILLE 257


>gi|189218158|ref|YP_001938800.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
 gi|189185016|gb|ACD82201.1| SAM-dependent methyltransferase [Methylacidiphilum infernorum V4]
          Length = 284

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 212 DLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G F   LA        +V+ V++    V  A+ N    H  NV+      +
Sbjct: 94  TVLDLGSG-GGFDCFLAARQVGESGKVIGVDMTPEMVARAQANALLGHYTNVEFRLGKIE 152

Query: 268 EF 269
             
Sbjct: 153 HL 154


>gi|168029694|ref|XP_001767360.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681424|gb|EDQ67851.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 225

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEF 269
           G +++ + G G  ++  A   D V+A++I    +E AR+N A    V++++ +     + 
Sbjct: 50  GLIVDAFTGVGGNAIQFALRGDHVIAIDIDPLKIEYARHNAAIYGVVDHIEFIVGDFFKI 109

Query: 270 TQAMRREREF 279
              ++ +  F
Sbjct: 110 APNLKADSIF 119


>gi|254302819|ref|ZP_04970177.1| polypeptide chain release factor methyltransferase HemK
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323011|gb|EDK88261.1| polypeptide chain release factor methyltransferase HemK
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 383

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 52/133 (39%), Gaps = 21/133 (15%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFD--R 233
            L ++  E             ++E  +   + I+  ++L++  G+G  S+ +A       
Sbjct: 164 GLPFKVSEGVLIP--RADTEILVEQCIQLMRDIEEPNILDIGTGSGAISIAIANELKSSS 221

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V  ++I + +++ A  N   N + NV  +               E N  + +D   +++ 
Sbjct: 222 VTGIDINEKALKLANENKILNKIENVNFI---------------ESNLFEKLD-KDFKYD 265

Query: 294 TIFVDPPRSGLDD 306
            I  +PP    ++
Sbjct: 266 LIVSNPPYISKEE 278


>gi|116512245|ref|YP_809461.1| 16S RNA G1207 methylase RsmC [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107899|gb|ABJ73039.1| 16S rRNA m(2)G 1207 methyltransferase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 227

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D+    + + G ++ ++     F++        +L  +          LL++ CG G
Sbjct: 43  LSHDFQTLTVDLLGLSMRFKTDRGVFSKNGIDYGSRVL--LEDYQPEGAKTLLDVGCGYG 100

Query: 222 NFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA+ FD  V  V++   +++  R N   N V+N +I                E +
Sbjct: 101 TLGLTLAKKFDLSVTMVDVNSRALDLCRQNAIDNAVSNTEI----------------ELS 144

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + +    S ++  I  +PP     +    ++  
Sbjct: 145 NIYE--AVSEKYDAIISNPPIRAGKEVVHEILTG 176


>gi|154174576|ref|YP_001407723.1| ribosomal protein L11 methyltransferase [Campylobacter curvus
           525.92]
 gi|153793114|gb|EAU00995.2| ribosomal protein L11 methyltransferase [Campylobacter curvus
           525.92]
          Length = 277

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L        + L++ CG+G  S+ LA+    V A +  + ++E+++ N   N VN  KI 
Sbjct: 137 LQKYAKNADEALDVGCGSGILSIALAKLGCDVEACDTDEQAIESSKSNAMLNGVNFSKIW 196

Query: 263 RMS 265
             S
Sbjct: 197 VGS 199


>gi|17508967|ref|NP_492400.1| hypothetical protein T08G11.4 [Caenorhabditis elegans]
 gi|5824602|emb|CAB02307.2| C. elegans protein T08G11.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 566

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAM 273
           + + G G  ++  A     V+A+++    ++ AR N     V N +  +     +     
Sbjct: 396 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVENYIDFICADFFDVAATW 455

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           + +++          + +   +F+ PP  G
Sbjct: 456 QADKKL---------APKVDAVFLSPPWGG 476


>gi|220932865|ref|YP_002509773.1| methyltransferase small [Halothermothrix orenii H 168]
 gi|219994175|gb|ACL70778.1| methyltransferase small [Halothermothrix orenii H 168]
          Length = 246

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 13/110 (11%)

Query: 213 LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           +++L  G+G   L+LA  +   RV+ +EI    V+ ++ +   N +   ++ +    KE 
Sbjct: 42  VVDLGSGSGVIPLLLAFKQKPGRVIGLEILPELVQLSKKSARMNGLEEIIEFIEGDIKEI 101

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                   ++  L+ +D+           PP  G          A   IL
Sbjct: 102 -------DDYIELESVDLVVCNPP---YMPPDKGKITKNREKAIARHEIL 141


>gi|326329432|ref|ZP_08195756.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardioidaceae bacterium Broad-1]
 gi|325952758|gb|EGD44774.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Nocardioidaceae bacterium Broad-1]
          Length = 188

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 19/134 (14%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVE 245
           Q N+     + + +          +L++  G+G  + +LA        V+ VE+    V 
Sbjct: 37  QTNS-QPRTVADMLHLLQVAPGDKVLDVGSGSGWTTALLAHLTGPAGSVVGVELEPSLVR 95

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
             R N+AA H    +I +  +        RE  ++R             I V      + 
Sbjct: 96  FGRRNLAATHQPWARIEKAKAGVL--GWPREAAYDR-------------ILVSAEAEAMP 140

Query: 306 DATVGMVQAYPHIL 319
              +  + A   ++
Sbjct: 141 SELMDQLAAPGRMV 154


>gi|315159265|gb|EFU03282.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0312]
          Length = 277

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEKALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|312971049|ref|ZP_07785228.1| protein smtA [Escherichia coli 1827-70]
 gi|310336810|gb|EFQ01977.1| protein smtA [Escherichia coli 1827-70]
 gi|315619115|gb|EFU99695.1| protein smtA [Escherichia coli 3431]
          Length = 230

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|307323320|ref|ZP_07602530.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
 gi|306890809|gb|EFN21785.1| Methyltransferase type 11 [Streptomyces violaceusniger Tu 4113]
          Length = 229

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A +N  + E       G     L+L CG G  ++ LA+    V AV+I+  +VE  R   
Sbjct: 39  AHVNPLLAETAAPLRPGAA---LDLGCGPGGDAIWLAQQGWHVTAVDISTTAVERVRERA 95

Query: 252 AANHVNN 258
               V +
Sbjct: 96  RDLGVAD 102


>gi|260460493|ref|ZP_05808744.1| SAM dependent methyltransferase [Mesorhizobium opportunistum
           WSM2075]
 gi|259033598|gb|EEW34858.1| SAM dependent methyltransferase [Mesorhizobium opportunistum
           WSM2075]
          Length = 363

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 73/210 (34%), Gaps = 30/210 (14%)

Query: 110 LTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT------KICLD 163
           L S + Q +     +R++    +    +   AL A+ ++         T      +    
Sbjct: 87  LDSGTGQKLEQYGPYRIVRPEGQAIWQK---ALPAKDWERADAVFTGDTDEEGIGRWRFP 143

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYC 218
           +  + E   +    + Y     SF           H   M   + AA + ++  +L L+ 
Sbjct: 144 KMPLGETWPMKHDGIDYLGRFTSFRHVGVFPEQASHWDHMAGLITAAKRPVK--VLNLFG 201

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRE 276
             G  SLV AR    V  V+ +K ++  AR N     +    ++ +   + +F      E
Sbjct: 202 YTGLASLVAARAGAEVTHVDASKKAIGWARENQEMAGLGGKPIRWIVDDAVKF-----AE 256

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           RE  R         R+  +  DPP  G   
Sbjct: 257 REERR-------GSRYDIVLFDPPAYGRGP 279


>gi|193084140|gb|ACF09806.1| tRNA methylase Trm12p [uncultured marine group III euryarchaeote
           SAT1000-53-B3]
          Length = 281

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                 +++ + G G F+L +AR +   R++AV+    ++E    N+  N++ NV+I+  
Sbjct: 125 FDKPRTIIDYFAGIGYFALQMARGYPKARIVAVDKNPKAIEYLTTNVKENNIENVEIIND 184

Query: 265 SSKEF 269
             +  
Sbjct: 185 DCRNV 189


>gi|297619682|ref|YP_003707787.1| RNA methylase-like protein [Methanococcus voltae A3]
 gi|297378659|gb|ADI36814.1| RNA methylase-like protein [Methanococcus voltae A3]
          Length = 271

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +  T      + +L  G+G  ++   +   +V A+E+   +      NI  N  +N+K+
Sbjct: 33  AIVNTITKDDIVFDLGTGSGILAMFAGKKAKKVYAIELDPITAYYTDKNIKTNDFDNIKL 92

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           V   + E+    + E       D+ I       +  +P
Sbjct: 93  VEADASEY--NFKDENGNKEQADVIIAEMLDTALITEP 128


>gi|126179070|ref|YP_001047035.1| methyltransferase type 11 [Methanoculleus marisnigri JR1]
 gi|125861864|gb|ABN57053.1| Methyltransferase type 11 [Methanoculleus marisnigri JR1]
          Length = 195

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA    + G +L++ CG G+  L  A     VL ++ A  ++  A    A   +   + +
Sbjct: 26  LARAGEVTGSVLDVGCGTGDHVLFFAEEGHEVLGIDTAALAIRKAEEKAAGRGLQ-AQFL 84

Query: 263 RMSSKEFT 270
              + + +
Sbjct: 85  VRDALDLS 92


>gi|19851925|gb|AAL99922.1|AF432215_1 CLL-associated antigen KW-2 [Homo sapiens]
          Length = 853

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 18/100 (18%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 694 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 753

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            ++                    +F+ PP  G D AT   
Sbjct: 754 FLKA-----------------DVVFLSPPWGGPDHATAET 776


>gi|91776826|ref|YP_546582.1| HemK family modification methylase [Methylobacillus flagellatus KT]
 gi|91710813|gb|ABE50741.1| [protein release factor]-glutamine N5-methyltransferase
           [Methylobacillus flagellatus KT]
          Length = 284

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 21/157 (13%)

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
           S  D     LI H   D+A  +      ++L AR+ + + +      +    RD++    
Sbjct: 37  SLGDVDHAWLIAH--GDEAVTDALRARFESLLARRIEGEPVAHILGRREFYGRDFI---- 90

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLA-- 228
            V   TLI R                ++E  L     G   ++L++  G G   + LA  
Sbjct: 91  -VTPDTLIPRSD-----------TETLVEAALDRIPVGQTCEILDMGTGTGAIGITLALE 138

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           R   +V  V+ ++ ++  AR N      +NV  +R  
Sbjct: 139 RPQAKVTIVDYSEAALAIARENARQLSAHNVTALRSD 175


>gi|332981938|ref|YP_004463379.1| type 11 methyltransferase [Mahella australiensis 50-1 BON]
 gi|332699616|gb|AEE96557.1| Methyltransferase type 11 [Mahella australiensis 50-1 BON]
          Length = 250

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           LL+L CG G  ++  A+       ++I++  +E A YN     +  V  V      F
Sbjct: 39  LLDLACGTGILTIKAAQRGVEAHGLDISEAMLEKAEYNARQADIE-VSYVCGDMSHF 94


>gi|307323869|ref|ZP_07603078.1| Methyltransferase type 12 [Streptomyces violaceusniger Tu 4113]
 gi|306890318|gb|EFN21295.1| Methyltransferase type 12 [Streptomyces violaceusniger Tu 4113]
          Length = 215

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +       V   T    G  L+L CG G  ++ LAR   RV AV++++ +++ A  
Sbjct: 33  PNAAL-------VRETTGLTPGSALDLGCGEGADAIWLARQGWRVTAVDVSQVALDRAAG 85

Query: 250 NIAANHV-NNVKIVRMSSKEFTQA 272
           + A+  V ++++  R    E   A
Sbjct: 86  HAASEGVGDHIEWQRHDLSESFPA 109


>gi|282857422|ref|ZP_06266655.1| methyltransferase [Pyramidobacter piscolens W5455]
 gi|282584707|gb|EFB90042.1| methyltransferase [Pyramidobacter piscolens W5455]
          Length = 255

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 17/114 (14%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL--AVEIAKPSVEAA 247
               +N+  +     A       ++EL C +G  SL+LA+ F       ++I    +E A
Sbjct: 31  VGPRVNMDTVLLAGFARPRPGERVIELGCAHGGVSLILAKRFPHSRFEGLDIQPRLIELA 90

Query: 248 RYNIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           R N A N +  N +                RE  RL +       F  + V+PP
Sbjct: 91  RENAARNGLTANARFETGD----------LREHRRLYEH----QSFDAVVVNPP 130


>gi|258625088|ref|ZP_05720007.1| Ribosomal RNA small subunit methyltransferase D [Vibrio mimicus
           VM603]
 gi|258582639|gb|EEW07469.1| Ribosomal RNA small subunit methyltransferase D [Vibrio mimicus
           VM603]
          Length = 199

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G      A R   +V  +E+   +    + N+ 
Sbjct: 46  VKETLFNWLAQEVP--QSRCLDLFAGSGGLGFECASRQASQVTMLELNPLAFNQLKTNVQ 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 104 SLKAENIELIHTDALAFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 148

Query: 312 VQAYPH-----ILYISC 323
           ++         ++YI C
Sbjct: 149 LEQNGWLSPQAMIYIEC 165


>gi|256963677|ref|ZP_05567848.1| modification methylase HemK [Enterococcus faecalis HIP11704]
 gi|307271623|ref|ZP_07552894.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0855]
 gi|256954173|gb|EEU70805.1| modification methylase HemK [Enterococcus faecalis HIP11704]
 gi|306511501|gb|EFM80500.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0855]
 gi|315170192|gb|EFU14209.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1342]
          Length = 277

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEKALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|224827262|ref|ZP_03700356.1| methyltransferase [Lutiella nitroferrum 2002]
 gi|224600551|gb|EEG06740.1| methyltransferase [Lutiella nitroferrum 2002]
          Length = 186

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 34/177 (19%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           + +A      +  DY   +L       + R   +        +   +  W+     G+  
Sbjct: 1   MSQARNQVRIIGGDYRRRQLPFPDAEGL-RPTPD-------RVRETLFNWLGQELDGLS- 51

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             L+L+ G+G       +R   RV+ VE ++   ++ + N       +V++V M +  + 
Sbjct: 52  -CLDLFAGSGALGFEAASRRARRVVMVEKSRKVADSLKANRQLLAAQSVEVVVMDALHYL 110

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI------LYI 321
           ++ R                RF  +F+DPP     +    ++   P +      +Y+
Sbjct: 111 KSCRE---------------RFDLVFLDPPYR--SELLEQILPLLPAVLADDARVYV 150


>gi|222152110|ref|YP_002561270.1| hypothetical protein MCCL_1867 [Macrococcus caseolyticus JCSC5402]
 gi|222121239|dbj|BAH18574.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 198

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 21/97 (21%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G   L++A+HF    +  V++ + ++  AR N   N+V +V I        
Sbjct: 60  RVLDVGCGYGTMGLMIAKHFPDCTLHMVDVNERALNLARKNAMHNNVKDVHIY------I 113

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLD 305
           +  +    EF            F  +  +PP R+G D
Sbjct: 114 SDGLNEVTEF------------FDAVITNPPIRAGKD 138


>gi|154498551|ref|ZP_02036929.1| hypothetical protein BACCAP_02541 [Bacteroides capillosus ATCC
           29799]
 gi|150272290|gb|EDM99484.1| hypothetical protein BACCAP_02541 [Bacteroides capillosus ATCC
           29799]
          Length = 271

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 8/82 (9%)

Query: 196 VHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARH---FDRV----LAVEIAKPSVEAA 247
             ++E + A  +  +G + L++ CG+G  ++  A+       V      VE A  S +  
Sbjct: 89  RQIIEGIAAYIELPEGGVGLDVGCGSGALTIACAKRNPSGRMVGIDRWGVEYASYSRKLC 148

Query: 248 RYNIAANHVNNVKIVRMSSKEF 269
             N  A  V+N+   +  ++  
Sbjct: 149 ERNARAEGVSNITFRQGDARHL 170


>gi|116495070|ref|YP_806804.1| O-methyltransferase [Lactobacillus casei ATCC 334]
 gi|191638573|ref|YP_001987739.1| Predicted O-methyltransferase [Lactobacillus casei BL23]
 gi|116105220|gb|ABJ70362.1| Predicted O-methyltransferase [Lactobacillus casei ATCC 334]
 gi|190712875|emb|CAQ66881.1| Predicted O-methyltransferase [Lactobacillus casei BL23]
          Length = 244

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +++L  GNG   L LAR    +V  VE+     + A+ ++A N + NV +  
Sbjct: 39  AQVKRHSRVVDLAAGNGAVGLFLARDTDQQVTMVELQPRLADMAKRSVALNQLQNVTVQV 98

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
               + TQ + ++                  +  +PP   +   ++
Sbjct: 99  GDLADATQMVAKD--------------SVDIVTCNPPYFKVSSQSI 130


>gi|78224576|ref|YP_386323.1| 50S ribosomal protein L11P methyltransferase [Geobacter
           metallireducens GS-15]
 gi|123570746|sp|Q39Q76|PRMA_GEOMG RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|78195831|gb|ABB33598.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Geobacter
           metallireducens GS-15]
          Length = 299

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 169 ERLTVAGRTLIYRQIEN-SF---TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           E  +     L+       +F   T P   + +  LE +     G  GD+L++  G+G  +
Sbjct: 125 EPFSPEPGDLVIELDPGMAFGTGTHPTTRLCLEALEKL-----GTAGDVLDVGTGSGILA 179

Query: 225 LVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +   +    RV+  +I   +V  AR N A N V 
Sbjct: 180 MAAVKLGAQRVVGTDIDPDAVAVARENCAMNGVT 213


>gi|15964142|ref|NP_384495.1| hypothetical protein SMc01131 [Sinorhizobium meliloti 1021]
 gi|307301287|ref|ZP_07581049.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|307317958|ref|ZP_07597395.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|15073318|emb|CAC41826.1| Probable SAM dependent methyltransferase [Sinorhizobium meliloti
           1021]
 gi|306896360|gb|EFN27109.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306903743|gb|EFN34330.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 384

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 16/111 (14%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN--IAANH 255
           M + V AA + ++  +L L+   G  SL+ A+    V  V+ +K ++  AR N  +A   
Sbjct: 198 MRDQVAAAGRPLK--VLNLFGYTGVASLIAAKAGAEVTHVDASKKAIGWARENQVLARAE 255

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              ++ +   + +F Q   R               R+  I  DPP+ G   
Sbjct: 256 KLPIRWICDDAMKFIQREER------------RGSRYDIILTDPPKFGRGP 294


>gi|332968678|gb|EGK07730.1| methyltransferase [Desmospora sp. 8437]
          Length = 250

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N       +E         +G+ +L+L CG G  S+ L     +V  ++++   ++ AR 
Sbjct: 28  NRAGAGREVEAAAEWLDLKKGESVLDLCCGTGRHSIALDDLGLKVTGIDLSSVLLQVARE 87

Query: 250 NIAANHVNNVKIVRMSSKEF 269
           N     +   + V    ++ 
Sbjct: 88  NSRGRRI---EYVHGDMRDL 104


>gi|329765827|ref|ZP_08257393.1| protein of unknown function Met10 [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137670|gb|EGG41940.1| protein of unknown function Met10 [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 275

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 69/186 (37%), Gaps = 7/186 (3%)

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +L+  + L        +++  ++  +   ++   R    ++    D  +      G    
Sbjct: 36  SLLPKKELIGETLLNEVKIAKSVFYQSSPVEGDFRTRNLEVIAGEDKTETEYKEFGCKFT 95

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVE 238
               EN+F  P        +    +        ++ ++ G G FS+++A+     V +++
Sbjct: 96  VDV-ENAFFSPRLSTERERI----SNMVQDGETVVNMFAGVGMFSIMIAKKKKCTVYSID 150

Query: 239 IAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           I   +V+    NI +N +  NV  +   + +  Q   + +    L  +   S  F    +
Sbjct: 151 INPIAVKLCERNILSNKILGNVISINGDAAKIIQEQLKNKSDRTLMLLPERSDEFLKSAI 210

Query: 298 DPPRSG 303
           D  +SG
Sbjct: 211 DATKSG 216


>gi|327382614|gb|AEA54090.1| hypothetical protein LC2W_1758 [Lactobacillus casei LC2W]
 gi|327385810|gb|AEA57284.1| hypothetical protein LCBD_1788 [Lactobacillus casei BD-II]
          Length = 247

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +++L  GNG   L LAR    +V  VE+     + A+ ++A N + NV +  
Sbjct: 42  AQVKRHSRVVDLAAGNGAVGLFLARDTDQQVTMVELQPRLADMAKRSVALNQLQNVTVQV 101

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
               + TQ + ++                  +  +PP   +   ++
Sbjct: 102 GDLADATQMVAKD--------------SVDIVTCNPPYFKVSSQSI 133


>gi|312899932|ref|ZP_07759250.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0470]
 gi|311292928|gb|EFQ71484.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0470]
          Length = 277

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEKALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
           A     ++    +
Sbjct: 157 ALGA-GIEFYHGN 168


>gi|289569312|ref|ZP_06449539.1| hypothetical protein hemK [Mycobacterium tuberculosis T17]
 gi|289543066|gb|EFD46714.1| hypothetical protein hemK [Mycobacterium tuberculosis T17]
          Length = 288

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           TV+   ++       F          +L W  A +   +  +++   G+G  ++ LA+H 
Sbjct: 95  TVSFGPVVLHVGPGVF--VPRPETEAILAWATAQSLPARPLIVDACTGSGALAVALAQHR 152

Query: 232 ------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R++ ++ +  +++ AR N A      V++VR      T  +  E +      +
Sbjct: 153 ANLGLKARIIGIDDSDCALDYARRNAAG---TPVELVRADVT--TPCLLPELDGQVDLMV 207

Query: 286 DIHSYRFKTIFVDP 299
               Y      ++P
Sbjct: 208 SNPPYIPDAAVLEP 221


>gi|312194811|ref|YP_004014872.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Frankia sp. EuI1c]
 gi|311226147|gb|ADP79002.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Frankia sp. EuI1c]
          Length = 324

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 23/144 (15%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL---------LELYCGNGNFS 224
             R L        F          ++ W +         +         ++L  G+G  +
Sbjct: 94  YFRHLTLAVGPGVF--VPRPETEAVVGWAIDTLAAEASSMPAERPGPVCVDLCAGSGAIA 151

Query: 225 LVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT------QAMRRE 276
           L LA       V AVE    ++   R N+AA        VR+ + +          +   
Sbjct: 152 LALADEVAGAEVHAVEADPAALTYLRRNVAATG----PPVRVHAADVLGIPTGYGPVGAW 207

Query: 277 REFNRLKDIDIHSYRFKTIFVDPP 300
            +   L  +     R   +  +PP
Sbjct: 208 AQVPVLDGLAGLVGRVDAVVSNPP 231


>gi|99078711|ref|YP_611969.1| methyltransferase small [Ruegeria sp. TM1040]
 gi|99035849|gb|ABF62707.1| methyltransferase small [Ruegeria sp. TM1040]
          Length = 262

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARY 249
           AG++  +L   + A  G    +LEL CG G   L LA       ++ VE+     E AR 
Sbjct: 33  AGVDPVLLAAAVNAKSG--DSVLELGCGAGQAFLCLAARVSGLSIVGVELQPAYAELARR 90

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           N A N V   ++V          +R+ R  + + +   +     +   DP R 
Sbjct: 91  NAAVNAVP-AEVVVADLSNLPATLRQRRFSHVIANPPYYRAGAHSQAKDPGRR 142


>gi|77734473|emb|CAJ26224.1| hypothetical protein [Thermotoga sp. RQ2]
          Length = 207

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +L         +L++ CG G F++ +A+    V+ V+++   ++ A       +V  V 
Sbjct: 5   RILENFHISGKKVLDVACGEGTFAVEIAKQGFEVVGVDLSPEMLKFAVERAERENVP-VV 63

Query: 261 IVRMSS------KEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
            ++M        +EF          N L D D     FK ++ 
Sbjct: 64  FLKMDMRDLSFQEEFDIVTCWFDSLNYLLDYDDLKRTFKGVWN 106


>gi|329766420|ref|ZP_08257964.1| tRNA (guanine-N(2)-)-methyltransferase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137019|gb|EGG41311.1| tRNA (guanine-N(2)-)-methyltransferase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 380

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 31/191 (16%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH---MLEWVLAATKGIQG 211
             KTK+ + +  + +++            E +F  P A +N     +             
Sbjct: 13  EGKTKVLVPKKSITDKVPPK---------EPAFFNPKARVNRDYSIIAYSSFLKKFAGPK 63

Query: 212 DLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             LE   G G   L +A     ++V+  ++   +++ A+Y+   N + N++   M    F
Sbjct: 64  IFLEGLTGVGIRGLRVANELQIEKVIINDLNPTALKMAKYSAQLNKLKNIEFSEMEVCRF 123

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
                ++ +   + DID         F    R+ +    +                 +  
Sbjct: 124 LSKFSKKDKRGSITDIDPFG-SPAPFFDCGIRATMHGGIL----------------STTA 166

Query: 330 RDLSILSTTHT 340
            DL +L+  + 
Sbjct: 167 TDLQVLNGLYQ 177


>gi|320100932|ref|YP_004176524.1| methyltransferase [Desulfurococcus mucosus DSM 2162]
 gi|319753284|gb|ADV65042.1| methyltransferase [Desulfurococcus mucosus DSM 2162]
          Length = 286

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
            E +  A     G+ +L ++ G G FS+++ARH    +V +++I   + +    NI  NH
Sbjct: 115 YEHLRIARLTRPGETVLNMFAGAGLFSIIIARHAAPRKVYSIDINPYAYQYMVENIRLNH 174

Query: 256 VNN-VKIVRMSSKEFTQA 272
           V + V+ +   + E   +
Sbjct: 175 VEDIVEPILGDAGEVVDS 192


>gi|302392775|ref|YP_003828595.1| methyltransferase type 11 [Acetohalobium arabaticum DSM 5501]
 gi|302204852|gb|ADL13530.1| Methyltransferase type 11 [Acetohalobium arabaticum DSM 5501]
          Length = 266

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 212 DLLELYCGNGNFSLVLARHF----DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L CG G F + LA        +V+ V++    +  AR     N+  NV+      +
Sbjct: 84  TVLDLGCGAG-FDVFLAAREVGIEGKVIGVDMTSEMITKARKTAEENNFENVEFRLGEIE 142

Query: 268 EFTQA 272
               A
Sbjct: 143 ALPAA 147


>gi|294508496|ref|YP_003572554.1| methyltransferase [Salinibacter ruber M8]
 gi|294344825|emb|CBH25603.1| methyltransferase [Salinibacter ruber M8]
          Length = 713

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 15/134 (11%)

Query: 212 DLLELYCGNGNFSLVLARHF----DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G     +AR        V  V+ A+  V  AR N      +NV       +
Sbjct: 519 RVLDLGSGAG-MDAFVARRTVGPDGHVHGVDFAEEMVAKARANADTLDYDNVTFEVGDIE 577

Query: 268 EF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP----H 317
                      +      N + D +    +         R  + D     V         
Sbjct: 578 ALPVESGAFDVVLSNCVLNLVPDKEAAFAQMHRALRPGGRFSVSDVVHAGVLPDGLREAA 637

Query: 318 ILYISCNPDSLCRD 331
            LY+ C   ++ RD
Sbjct: 638 ELYVGCVAGAMERD 651


>gi|222109994|ref|YP_002552258.1| type 12 methyltransferase [Acidovorax ebreus TPSY]
 gi|221729438|gb|ACM32258.1| Methyltransferase type 12 [Acidovorax ebreus TPSY]
          Length = 280

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 22/125 (17%)

Query: 195 NVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++ W L          + +L  G+G  +L L   R   +VLAV+ +  ++  AR N 
Sbjct: 97  TETLVAWALEVLATRAAPRVADLGTGSGAIALALQHERPDAQVLAVDASADALAVARANA 156

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +  V+ ++                N L  +D     F  I  +PP     D  +  
Sbjct: 157 GQLGLP-VRFIQG---------------NWLHGVD---GSFDAIVSNPPYIAAQDPHLAA 197

Query: 312 VQAYP 316
           +   P
Sbjct: 198 LTHEP 202


>gi|153826312|ref|ZP_01978979.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|149739980|gb|EDM54159.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
          Length = 199

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+           L+L+ G+G      A R  ++V  +E+   + +  + N+ 
Sbjct: 46  VKETLFNWLAQEVPN--ARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQ 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 104 SLKAENIELIHTDALAFLRQ---------------SGKPYDMVFIDPPFRQGLLQETTQL 148

Query: 312 VQ-----AYPHILYISC 323
           ++     A   ++YI C
Sbjct: 149 LEQNGWLAPQAMIYIEC 165


>gi|21229383|ref|NP_635305.1| SAM-dependent methyltransferase [Methanosarcina mazei Go1]
 gi|20907973|gb|AAM32977.1| SAM-dependent methyltransferases [Methanosarcina mazei Go1]
          Length = 282

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 169 ERLTVAGRTLIYRQ-IENSFTQPNAGINVHML-EWVLAATKGIQGD-LLELYCGNGNFSL 225
           E L        YR  +   F       N  +  E    A+K + G+ +L  + G G F L
Sbjct: 90  ETLH-RENGYTYRMDVRKVFF------NPRLYWERARVASKVLSGESVLIPFAGVGPFVL 142

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE-FTQAMRREREFNRLK 283
             A     V A+EI   +    + NI  N +   V +++  ++   + +   E E  R+ 
Sbjct: 143 PPAGKGTMVCAIEINPDACACLKENIRLNKLEKQVTVIQGDAEFILSHSGSLEAEGFRVP 202

Query: 284 DIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQAYPHI 318
           +       F    V  P  G+D        +++   HI
Sbjct: 203 E-----NGFDRAIVPTPY-GMDHFLGKVSELIKKGGHI 234


>gi|313679277|ref|YP_004057016.1| RNA cap guanine-n2 methyltransferase [Oceanithermus profundus DSM
           14977]
 gi|313151992|gb|ADR35843.1| RNA cap guanine-N2 methyltransferase [Oceanithermus profundus DSM
           14977]
          Length = 389

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV- 256
           M  W           + +L  G G  +L LA    RVLAVE          +N AA  + 
Sbjct: 85  MARWRAEHVFAPYARVADLGAGIGGDALALALVGKRVLAVERDPVRAALLEHNAAALGLA 144

Query: 257 NNVKIVRMS 265
           + +++VR  
Sbjct: 145 DRLRVVRAD 153


>gi|297570889|ref|YP_003696663.1| methyltransferase type 11 [Arcanobacterium haemolyticum DSM 20595]
 gi|296931236|gb|ADH92044.1| Methyltransferase type 11 [Arcanobacterium haemolyticum DSM 20595]
          Length = 205

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN+ I  H+L W         G  L++ CG G  ++ LA+   RV  ++ ++ ++     
Sbjct: 28  PNSIIASHVLPWA-------PGMALDVGCGEGRDAVWLAQRGWRVRGIDFSETAISRMAD 80

Query: 250 NIAANHVNN-VKIVRMSS 266
             A + V + V+     +
Sbjct: 81  ATAESGVADAVEGFVGDA 98


>gi|294142152|ref|YP_003558130.1| hemK family protein [Shewanella violacea DSS12]
 gi|293328621|dbj|BAJ03352.1| hemK family protein [Shewanella violacea DSS12]
          Length = 280

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 15/167 (8%)

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR--DALHARKYQIQLIGRANKTKI 160
           +L  +        + ++  I H+     +     RL     +   K   + +       I
Sbjct: 15  QLVDVSDTPKLDAEVMLLHIIHKQRGYLYTWPDERLASEQVVDYTKMVHRRVLGTPIAHI 74

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
             +R++      V   TLI R                ++E  L         +L+L  G 
Sbjct: 75  VGEREFWSLPFMVNPTTLIPRPD-----------TEILVETALNLPLAENAKVLDLGTGT 123

Query: 221 GNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           G  +L LA  +   ++ AV+    +V  A+ N A   +  V+I++  
Sbjct: 124 GAIALSLAYEKSQWQITAVDKIIEAVALAKANRAHLKLQQVEIIKSD 170


>gi|261393389|emb|CAX51025.1| putative protein methyltransferase HemK (protein-glutamine
           N-methyltransferase HemK; protein-(glutamine-N5) MTase
           HemK; M.StyLTHemKP) [Neisseria meningitidis 8013]
          Length = 423

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 81/232 (34%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 188 EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 237

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V   +I+ P++E 
Sbjct: 238 ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRTSDISTPALET 290

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 291 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIASNPPYIENGD 334

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
                G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 335 KHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 385


>gi|227820612|ref|YP_002824582.1| hypothetical protein NGR_c00250 [Sinorhizobium fredii NGR234]
 gi|227339611|gb|ACP23829.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 380

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 21/150 (14%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVH---MLEWVLAATKGIQGDLLELYC 218
           R+ + E   +      +     SF           H   M + V A+ + ++  +L L+ 
Sbjct: 155 REALGETWPMQLLDTDFLGRFTSFRHVGVFPEQLAHWSWMKDQVAASGRPLK--VLNLFG 212

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRRE 276
             G  SLV A+    V  V+ +K ++  AR N A        ++ +   + +F Q   R 
Sbjct: 213 YTGVASLVAAKAGAEVTHVDASKKAIGWARENQAMARAEKLPIRWICDDAMKFIQREER- 271

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                         R+  I  DPP+ G   
Sbjct: 272 -----------RGSRYDIILTDPPKFGRGP 290


>gi|217076315|ref|YP_002334031.1| SAM-dependent methyltransferase [Thermosipho africanus TCF52B]
 gi|217036168|gb|ACJ74690.1| SAM-dependent methyltransferase [Thermosipho africanus TCF52B]
          Length = 389

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 214 LELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+ +C  GNF + + +     V  ++ ++ ++E        N+  N   +  ++      
Sbjct: 215 LDAFCYTGNFGMHMLKFGAKHVTFLDYSERAIEVVNITAKKNNFKNYDTIIGNA------ 268

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                 F+ LK  D +S  F  I +DPP    + 
Sbjct: 269 ------FDILKSYDNNSKIFDIISIDPPAFAKNA 296


>gi|90413380|ref|ZP_01221373.1| ribosomal protein L11 methyltransferase [Photobacterium profundum
           3TCK]
 gi|90325622|gb|EAS42091.1| ribosomal protein L11 methyltransferase [Photobacterium profundum
           3TCK]
          Length = 294

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L         +++  CG+G  ++  L     +V+ ++I   +++A+R N   N V+
Sbjct: 150 LEW-LDGQDLTGQTIIDFGCGSGILAIAALKLGAKKVIGIDIDPQAIQASRDNAERNGVS 208

Query: 258 N 258
           +
Sbjct: 209 D 209


>gi|24375322|ref|NP_719365.1| hemK family protein [Shewanella oneidensis MR-1]
 gi|24350135|gb|AAN56809.1|AE015816_6 hemK family protein [Shewanella oneidensis MR-1]
          Length = 286

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 19/108 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   ++ AV+  + +V  A+ N  
Sbjct: 100 TEILVESALNLPLESNAKVLDLGTGTGAIALALASERAAWQITAVDKVEDAVALAKANRT 159

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              +  V+I++                       + S+ F  I  +PP
Sbjct: 160 NLKLEQVEILQSD-----------------WFSAVTSHDFDLIVSNPP 190


>gi|89898600|ref|YP_515710.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
 gi|89331972|dbj|BAE81565.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56]
          Length = 274

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 10/95 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L L+   G+ S+  A+   +V  V+ +K +V+ A+ N+  N ++  KI          
Sbjct: 108 RVLNLFAYTGSTSIFAAQCGAKVCHVDASKSAVKWAQKNVENNVLSEKKIF--------- 158

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
               E  F+ L+       +++ I +DPP  G   
Sbjct: 159 -WVIEDVFSFLQKEIRRGKKYEVILLDPPTYGRGP 192


>gi|68068235|ref|XP_676027.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56495529|emb|CAH99346.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 474

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 78/245 (31%), Gaps = 55/245 (22%)

Query: 84  NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALH 143
           + +   ++        ++      + +    + AI+ L+  + +     +   RL + L 
Sbjct: 182 DHIPGLIIDRYDDIISIQHLTLGCEMMACNINDAIIELLNPKAII-FRNDNKERLNEKLE 240

Query: 144 ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ----IENS--FTQPNAGINVH 197
             K            K+   +    E + +      +        N+  F       N  
Sbjct: 241 IYK------------KVVYGK--FSEHVILNENGCFFIIDLINSPNTGWFF------NRQ 280

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
            L  +++     Q ++L+L+   G+F +   ++     V  VE  K  V+ A+ +   N+
Sbjct: 281 HLRNIISNY-ACQKNVLDLFSYVGSFGIQCLKNGKAMHVTCVEKDKHFVQLAKQSAIINN 339

Query: 256 VN----------NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           +           N++ + + +  F +   +                F  I +DPP     
Sbjct: 340 IAHAPMENSEQSNIEFICLDAITFLKNCNKL---------------FDIIILDPPNLIPK 384

Query: 306 DATVG 310
              + 
Sbjct: 385 SKFIE 389


>gi|307706537|ref|ZP_07643344.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus mitis SK321]
 gi|307617992|gb|EFN97152.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus mitis SK321]
          Length = 278

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 35/175 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+   +LTV  R LI R                ++  +LA     
Sbjct: 61  QLAAHKPAQYIIGQTDFYGMQLTVDERVLIPRPE-----------TEELVGLILAENPET 109

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A +I++ +++ A  N       N++I    S 
Sbjct: 110 NLSVLDIGTGSGAIALALAKNRPDWSVTAADISQDALDLANENAKN---QNLQIFLKKSD 166

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPHIL 319
            FT+                 S ++  I  +PP   R    +  + ++ + PH+ 
Sbjct: 167 CFTE----------------ISEKYDIIVSNPPYISREDESEVGLNVLHSEPHLA 205


>gi|289427618|ref|ZP_06429330.1| methyltransferase small domain protein [Propionibacterium acnes
           J165]
 gi|289159109|gb|EFD07301.1| methyltransferase small domain protein [Propionibacterium acnes
           J165]
 gi|313808788|gb|EFS47242.1| methyltransferase small domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313819880|gb|EFS57594.1| methyltransferase small domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823372|gb|EFS61086.1| methyltransferase small domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313824844|gb|EFS62558.1| methyltransferase small domain protein [Propionibacterium acnes
           HL063PA1]
 gi|314925808|gb|EFS89639.1| methyltransferase small domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314979789|gb|EFT23883.1| methyltransferase small domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314986105|gb|EFT30197.1| methyltransferase small domain protein [Propionibacterium acnes
           HL005PA2]
 gi|315083347|gb|EFT55323.1| methyltransferase small domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315089971|gb|EFT61947.1| methyltransferase small domain protein [Propionibacterium acnes
           HL072PA1]
 gi|327325122|gb|EGE66928.1| putative methyltransferase small domain protein [Propionibacterium
           acnes HL096PA3]
 gi|327449323|gb|EGE95977.1| methyltransferase small domain protein [Propionibacterium acnes
           HL013PA2]
 gi|328756333|gb|EGF69949.1| methyltransferase small domain protein [Propionibacterium acnes
           HL020PA1]
 gi|332676208|gb|AEE73024.1| methylase-like protein [Propionibacterium acnes 266]
          Length = 206

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 20/112 (17%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  +  LAR      ++AV++   +++    N  A  V + ++  
Sbjct: 63  PPPSNGTFLDLGCGYGPIACALARACSGSHIVAVDVNDLAIDLTTRNAKALRVGD-RVHA 121

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
              +E    +R                 F  I+ +PP      A   ++  +
Sbjct: 122 CRPEEVDPDLR-----------------FDEIWSNPPIRVGKAALHEILTTW 156


>gi|282855154|ref|ZP_06264486.1| methyltransferase small domain protein [Propionibacterium acnes
           J139]
 gi|295131338|ref|YP_003582001.1| methyltransferase small domain protein [Propionibacterium acnes
           SK137]
 gi|282581742|gb|EFB87127.1| methyltransferase small domain protein [Propionibacterium acnes
           J139]
 gi|291376428|gb|ADE00283.1| methyltransferase small domain protein [Propionibacterium acnes
           SK137]
 gi|313773225|gb|EFS39191.1| methyltransferase small domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313810418|gb|EFS48132.1| methyltransferase small domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313812248|gb|EFS49962.1| methyltransferase small domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313830086|gb|EFS67800.1| methyltransferase small domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313832642|gb|EFS70356.1| methyltransferase small domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314924130|gb|EFS87961.1| methyltransferase small domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314964971|gb|EFT09070.1| methyltransferase small domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314973065|gb|EFT17161.1| methyltransferase small domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314975561|gb|EFT19656.1| methyltransferase small domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314982234|gb|EFT26327.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA3]
 gi|314984845|gb|EFT28937.1| methyltransferase small domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315079904|gb|EFT51880.1| methyltransferase small domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315090494|gb|EFT62470.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315093730|gb|EFT65706.1| methyltransferase small domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315096708|gb|EFT68684.1| methyltransferase small domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327325249|gb|EGE67054.1| putative methyltransferase small domain protein [Propionibacterium
           acnes HL096PA2]
 gi|327325549|gb|EGE67348.1| putative methyltransferase small domain protein [Propionibacterium
           acnes HL103PA1]
 gi|327444050|gb|EGE90704.1| methyltransferase small domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449449|gb|EGE96103.1| methyltransferase small domain protein [Propionibacterium acnes
           HL043PA2]
 gi|328761334|gb|EGF74861.1| putative methyltransferase small domain protein [Propionibacterium
           acnes HL099PA1]
          Length = 206

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 20/112 (17%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  +  LAR      ++AV++   +++    N  A  V + ++  
Sbjct: 63  PPPSNGTFLDLGCGYGPIACALARACSGSHIVAVDVNDLAIDLTTRNAKALRVGD-RVHA 121

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
              +E    +R                 F  I+ +PP      A   ++  +
Sbjct: 122 CRPEEVDPDLR-----------------FDEIWSNPPIRVGKAALHEILTTW 156


>gi|242021685|ref|XP_002431274.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212516531|gb|EEB18536.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 316

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 63/162 (38%), Gaps = 26/162 (16%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFS 224
           ++ E  T     +   Q           I   ML  + +    I+G ++ +L CG G+ S
Sbjct: 118 HIQEIKTFTRPKVKLEQYA-----TMPHICARMLHSIQSCYDDIEGKIIADLGCGCGSLS 172

Query: 225 L-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +     + +  + V++   +++  + NI    + N+ ++     +               
Sbjct: 173 IGSCLLNCEFCVGVDVDSDALKICQENIQEFSIENIDLIMCDVTKNV------------- 219

Query: 284 DIDIHSYRFKTIFVDPP----RSGLDDATVGM-VQAYPHILY 320
            I ++  +F T+ ++PP      GLD   + + +Q   + +Y
Sbjct: 220 -ISLNDKKFDTVIMNPPFGTKTKGLDIEFLKLALQLTDNAVY 260


>gi|156404045|ref|XP_001640218.1| predicted protein [Nematostella vectensis]
 gi|156227351|gb|EDO48155.1| predicted protein [Nematostella vectensis]
          Length = 228

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 198 MLEWVLAATK-GIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
           M++W+    +      +L++ CGNG   + LA+ ++  +L ++ +  +++ A        
Sbjct: 54  MIKWIKKCPRISKNSSILDVGCGNGMLLVPLAQDNYKDLLGIDYSAAAIKLAISVAEQES 113

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVG 310
           V N+K +     E       E+ F    D+ +    +  I ++P      R     +   
Sbjct: 114 V-NIKFMECDILELRGGPLEEKTF----DMCLDKGTYDAISLNPDDSLACRQKYIKSVSE 168

Query: 311 MVQAYPHILYISCN 324
           +++ +  ++  SCN
Sbjct: 169 LLRPHALLVITSCN 182


>gi|172061040|ref|YP_001808692.1| methyltransferase type 11 [Burkholderia ambifaria MC40-6]
 gi|171993557|gb|ACB64476.1| Methyltransferase type 11 [Burkholderia ambifaria MC40-6]
          Length = 287

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 15/114 (13%)

Query: 212 DLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L++ CG G  +L LA       +VL V+I++P ++ AR    A H          +  
Sbjct: 49  RVLDIGCGAGASTLALAARVGAGGQVLGVDISEPLIDRAR--ALARHDTPALFQVADA-- 104

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
            + A   E  F      DI   RF  +F D P +         ++    + ++ 
Sbjct: 105 -SSAELPEGAF------DILFSRFGVMFFDDPTAAFAH-MRRALRPGGRVAFVC 150


>gi|304321920|ref|YP_003855563.1| 50S ribosomal protein L11 methyltransferase [Parvularcula
           bermudensis HTCC2503]
 gi|303300822|gb|ADM10421.1| ribosomal protein L11 methyltransferase, putative [Parvularcula
           bermudensis HTCC2503]
          Length = 297

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV 256
           LE + A  KG    LL+L  G+G  ++   R F   R++A +I  PSV  A  N A N  
Sbjct: 142 LEALTALAKGEPRRLLDLGTGSGVLAIAARRLFPEARIVATDIDAPSVAIAAENAALNKA 201

Query: 257 NNVKIVRMSSKEFTQAMRREREFN 280
             +    + +    Q +  E  F+
Sbjct: 202 PGIVF--LEATGVPQEVAEEGPFD 223


>gi|119714639|ref|YP_921604.1| methyltransferase small [Nocardioides sp. JS614]
 gi|119535300|gb|ABL79917.1| methyltransferase small [Nocardioides sp. JS614]
          Length = 486

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 16/90 (17%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L+L  G G  +L LARH   V+A ++ + ++  AR+N+  N V     VR  +  F 
Sbjct: 157 GRALDLGTGCGVQALHLARHCSEVVATDVNQRALRIARFNLDLNAVTTPVDVR--AGSFF 214

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +               +    F  I  +PP
Sbjct: 215 E--------------PVADDTFDLIVTNPP 230


>gi|323351031|ref|ZP_08086688.1| rRNA methylase [Streptococcus sanguinis VMC66]
 gi|322122755|gb|EFX94464.1| rRNA methylase [Streptococcus sanguinis VMC66]
          Length = 183

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVMTKEDTVVDATMGNGHDTLFLAQLARKVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQAM 273
           +N +++    +   Q +
Sbjct: 66  DNAQLILAGHETLDQYL 82


>gi|312136621|ref|YP_004003958.1| methyltransferase [Methanothermus fervidus DSM 2088]
 gi|311224340|gb|ADP77196.1| methyltransferase [Methanothermus fervidus DSM 2088]
          Length = 240

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A        +++++ G G FS+ +A      +V A+EI   + +  + NI  N V    
Sbjct: 84  IAKLVNKDETVVDMFAGIGYFSIPIAVHSQPKKVFAIEINPTAFKYLKENIKLNKVEKKV 143

Query: 261 I-VRMSSKEFTQAMRRERE-FNRLKDI 285
             +     +    +  +R     L D 
Sbjct: 144 FPILGDCGKIAPELDADRVIMGYLPDP 170


>gi|307298649|ref|ZP_07578452.1| methyltransferase small [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915814|gb|EFN46198.1| methyltransferase small [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 392

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 15/108 (13%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQA 272
           L+L+   G F L +A      + V+ +   +E  R N   N ++N ++ V+    +F   
Sbjct: 222 LDLFSFTGGFGLNMACSGADAICVDKSGDDLEQGRMNSVVNKLDNKLQFVQSDVLDFLAG 281

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHIL 319
             ++  F               + VDPP            +  +  ++
Sbjct: 282 FEKKDYF-------------DIVVVDPPSFVKHRKELPHGISLFKRLV 316


>gi|297562495|ref|YP_003681469.1| methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846943|gb|ADH68963.1| Methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 200

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            G  L++ CG G F+  LAR     + V+I   +VEAAR 
Sbjct: 42  PGRALDIGCGRGQFTPELARRGWEAVGVDIVPEAVEAARR 81


>gi|296103077|ref|YP_003613223.1| putative metallothionein SmtA [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057536|gb|ADF62274.1| putative metallothionein SmtA [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 259

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ +LA   G    +L+   G G  ++ +A     V   +++   V  A        V +
Sbjct: 34  LDTILATYGGQTLRVLDAGGGEGQTAIKMAERGHHVTLCDLSAEMVARATRAAEEKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N+  V+ ++++  Q +  + + 
Sbjct: 94  NMHFVQCAAQDIAQHLETQVDL 115


>gi|293364551|ref|ZP_06611274.1| S-adenosylmethionine-dependent methyltransferase [Streptococcus
           oralis ATCC 35037]
 gi|307702549|ref|ZP_07639502.1| methyltransferase domain protein [Streptococcus oralis ATCC 35037]
 gi|315611934|ref|ZP_07886852.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296]
 gi|291316963|gb|EFE57393.1| S-adenosylmethionine-dependent methyltransferase [Streptococcus
           oralis ATCC 35037]
 gi|307623895|gb|EFO02879.1| methyltransferase domain protein [Streptococcus oralis ATCC 35037]
 gi|315315923|gb|EFU63957.1| conserved hypothetical protein [Streptococcus sanguinis ATCC 49296]
          Length = 195

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 196 VHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
            +++  V+     +    ++L+   G G  +L LA+    V  V+I++  +E AR     
Sbjct: 21  ANLVCQVVEKQIALLSDKEILDFGGGTGLLALPLAKQAKSVTLVDISEKMLEQARLKAEQ 80

Query: 254 NHVNNVKI 261
             + N++ 
Sbjct: 81  QDIKNIQF 88


>gi|289753377|ref|ZP_06512755.1| hypothetical protein hemK [Mycobacterium tuberculosis EAS054]
 gi|289693964|gb|EFD61393.1| hypothetical protein hemK [Mycobacterium tuberculosis EAS054]
          Length = 310

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           TV+   ++       F          +L W  A +   +  +++   G+G  ++ LA+H 
Sbjct: 95  TVSFGPVVLHVGPGVF--VPRPETEAILAWATAQSLPARPLIVDACTGSGALAVALAQHR 152

Query: 232 ------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R++ ++ +  +++ AR N A      V++VR      T  +  E +      +
Sbjct: 153 ANLGLKARIIGIDDSDCALDYARRNAAG---TPVELVRADVT--TPCLLPELDGQVDLMV 207

Query: 286 DIHSYRFKTIFVDP 299
               Y      ++P
Sbjct: 208 SNPPYIPDAAVLEP 221


>gi|290955098|ref|YP_003486280.1| methyltransferase [Streptomyces scabiei 87.22]
 gi|260644624|emb|CBG67709.1| putative methyltransferase [Streptomyces scabiei 87.22]
          Length = 226

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +       V        G +L++ CG G  ++ LAR    V A+E++  ++E A 
Sbjct: 45  QPNGAL-------VAETAGLTPGRVLDVGCGEGADAVWLARGGWDVTALEVSGVALERAA 97

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            +     +     +R    E   A      F      D+ S ++  +   P  +  + A 
Sbjct: 98  GHARDAGLA----IRWVHAELAGAALPPGSF------DLVSAQYPALLRTPDSA-AERAL 146

Query: 309 VGMVQ 313
           +  V 
Sbjct: 147 LAAVA 151


>gi|167032528|ref|YP_001667759.1| type 11 methyltransferase [Pseudomonas putida GB-1]
 gi|166859016|gb|ABY97423.1| Methyltransferase type 11 [Pseudomonas putida GB-1]
          Length = 254

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                     +L+L CG G+ S  +A     V+A ++++  ++      A   + N+   
Sbjct: 38  AELAGQAHARVLDLGCGAGHVSFHVAPLVAEVVAYDLSQSMLDVVASAAAERGLANIATE 97

Query: 263 RMSSKEFTQA 272
           R +++    A
Sbjct: 98  RGAAERLPFA 107


>gi|327451474|gb|EGE98128.1| methyltransferase small domain protein [Propionibacterium acnes
           HL087PA3]
          Length = 206

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 20/112 (17%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  +  LAR      ++AV++   +++    N  A  V + ++  
Sbjct: 63  PPPSDGTFLDLGCGYGPIACALARACPGSHIVAVDVNDLAIDLTTRNAKALRVGD-RVHA 121

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
              +E    +R                 F  I+  PP      A   ++  +
Sbjct: 122 CRPEEVDPDLR-----------------FDEIWSTPPIRVGKAALHEILTTW 156


>gi|294815902|ref|ZP_06774545.1| methyltransferase type 12 [Streptomyces clavuligerus ATCC 27064]
 gi|294328501|gb|EFG10144.1| methyltransferase type 12 [Streptomyces clavuligerus ATCC 27064]
          Length = 244

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L+++ CGNG  +L LA  F  VL V+++  ++  AR   +   +  ++  ++ + + T 
Sbjct: 52  TLVDIGCGNGTQTLFLADRFPAVLGVDLSAAAIGLARRRESPAPLGTIEFRQLDAAD-TD 110

Query: 272 AMRRERE 278
            + R RE
Sbjct: 111 GIARLRE 117


>gi|326202056|ref|ZP_08191926.1| ribosomal protein L11 methyltransferase [Clostridium papyrosolvens
           DSM 2782]
 gi|325987851|gb|EGD48677.1| ribosomal protein L11 methyltransferase [Clostridium papyrosolvens
           DSM 2782]
          Length = 316

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M   +L         +L++ CG G  S++ A+     V A++I + +V+ A+ NI  
Sbjct: 160 TTQMCSILLDKYMKDDTQVLDIGCGTGILSIIAAKLGAKTVEAIDIDEVAVKVAKENIEL 219

Query: 254 N 254
           N
Sbjct: 220 N 220


>gi|229545077|ref|ZP_04433802.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis TX1322]
 gi|307287618|ref|ZP_07567661.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0109]
 gi|229309969|gb|EEN75956.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Enterococcus faecalis TX1322]
 gi|306501356|gb|EFM70659.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX0109]
 gi|315165015|gb|EFU09032.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX1302]
          Length = 277

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGVIAISLKLARPNWRVIAIDLSEEALTVAKQNAK 156

Query: 253 ANHVNNVKIVRMS 265
               + ++    +
Sbjct: 157 VLGAD-IEFYHGN 168


>gi|170289615|ref|YP_001739853.1| methyltransferase type 11 [Thermotoga sp. RQ2]
 gi|170177118|gb|ACB10170.1| Methyltransferase type 11 [Thermotoga sp. RQ2]
          Length = 244

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +L         +L++ CG G F++ +A+    V+ V+++   ++ A       +V  V 
Sbjct: 20  RILENFHISGKKVLDVACGEGTFAVEIAKQGFEVVGVDLSPEMLKFAVERAERENVP-VV 78

Query: 261 IVRMSS------KEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
            ++M        +EF          N L D D     FK ++ 
Sbjct: 79  FLKMDMRDLSFQEEFDIVTCWFDSLNYLLDYDDLKRTFKGVWN 121


>gi|134099761|ref|YP_001105422.1| hypothetical protein SACE_3222 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912384|emb|CAM02497.1| hypothetical protein SACE_3222 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 496

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA    ++G +L+  CG G  S+ LA     VL  + ++ +V  AR N   +  +  +  
Sbjct: 322 LARDGWVRGAVLDPGCGTGENSIHLASLGHDVLGTDFSEIAVAQARLNAVEHGCS-ARFE 380

Query: 263 RMSS 266
              +
Sbjct: 381 VSDA 384


>gi|115903828|ref|XP_791010.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115973037|ref|XP_001192380.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 375

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L++ CG+G   L LA H+   R + +EI + SV++AR      ++ NV+   + +    
Sbjct: 190 MLDVGCGHGAGILNLAEHYPRSRFVGIEIGEDSVKSARDLANVKNLTNVEFHCIDATTLP 249

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIF 296
           +      ++    ++     R   + 
Sbjct: 250 KDWANTFDYVFFHNVIHDLARPDLVL 275


>gi|260907290|ref|ZP_05915612.1| putative methyltransferase [Brevibacterium linens BL2]
          Length = 406

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 12/125 (9%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             A  G    +L+L CGNG + L  A           V+++K +V +AR    AN +  V
Sbjct: 258 AEAVTGSPNSILDLGCGNG-WLLTAAMQVTAAKNGTGVDVSKAAVTSARETAEANGLE-V 315

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI- 318
             +   + +  QA+    +   L          +T       +GL      ++     + 
Sbjct: 316 DTILADATDV-QALSGGHDLILLNPPFHQGTTIETDTA----AGLMATASKLLAPGGQVF 370

Query: 319 -LYIS 322
            +Y S
Sbjct: 371 TVYNS 375


>gi|20090911|ref|NP_616986.1| Met-10+ related protein [Methanosarcina acetivorans C2A]
 gi|19915989|gb|AAM05466.1| Met-10+ related protein [Methanosarcina acetivorans C2A]
          Length = 343

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN 257
           E    +  G    +++++ G G FS+ +A H   ++++++EI   S      NI  N V 
Sbjct: 180 ERKRMSKLGQGEIVVDMFAGIGYFSIPMAVHAHPEKIISIEINPESFAYLNENIRLNQVE 239

Query: 258 N-VKIVRMSSKEFTQAMRRER 277
           + +  ++    E       +R
Sbjct: 240 DIITPIQGDCAEAAPEGEADR 260


>gi|114561907|ref|YP_749420.1| modification methylase, HemK family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114333200|gb|ABI70582.1| modification methylase, HemK family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 284

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 19/133 (14%)

Query: 141 ALHARKYQIQLIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI 194
            L + +++      A +        I  +R++      V   TLI R             
Sbjct: 53  QLTSEQFKAYSQMIAKRQSGTPVAHIIGEREFWSLPFIVNESTLIPRPD----------- 101

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L  +      +L+L  G G  +L LA  R   R+ A++    +VE A+ N  
Sbjct: 102 TEILVETALNLSVRHNAKVLDLGTGTGAIALALASERPKWRITAIDKVPEAVELAKANRG 161

Query: 253 ANHVNNVKIVRMS 265
             ++  V+I++  
Sbjct: 162 NLNLTEVEIIQSD 174


>gi|307319122|ref|ZP_07598552.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83]
 gi|306895229|gb|EFN25985.1| Methyltransferase type 11 [Sinorhizobium meliloti AK83]
          Length = 261

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +AA  G    +L++ CG G  +   AR       + V+I+   +E A    AA  + N  
Sbjct: 22  VAADFGADDRVLDIGCGAGQTTREAARAAPQGEAIGVDISAEMLEEASRRSAAEGLRNAM 81

Query: 261 IVRMSS 266
             +  +
Sbjct: 82  FEQGDA 87


>gi|326791223|ref|YP_004309044.1| ribosomal protein L11 methyltransferase [Clostridium lentocellum
           DSM 5427]
 gi|326541987|gb|ADZ83846.1| ribosomal protein L11 methyltransferase [Clostridium lentocellum
           DSM 5427]
          Length = 322

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 1/132 (0%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-L 227
           E        +I     NS           +    L         +L++ CG+G  S+  L
Sbjct: 138 ESYNENTNRMILEIDPNSSFGTGQHYTTQLCIEQLEQIIKPDAKVLDMGCGSGILSIATL 197

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
                 V AV+I + SV+ A+ N   N +   +               +       D+ +
Sbjct: 198 LLGAQHVTAVDIDQNSVDIAKDNFIQNGMKQGQFALHCGNVIADEALVKIIGQGCYDVVV 257

Query: 288 HSYRFKTIFVDP 299
            +     I    
Sbjct: 258 ANIVADVIIGMK 269


>gi|284048009|ref|YP_003398348.1| Methyltransferase type 11 [Acidaminococcus fermentans DSM 20731]
 gi|283952230|gb|ADB47033.1| Methyltransferase type 11 [Acidaminococcus fermentans DSM 20731]
          Length = 244

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
                   +  +LEL CG G  SL+LA R  ++VL V++    VE  + +I  NH+ + V
Sbjct: 34  AAFPHLVRKAKVLELGCGTGAVSLLLANRGAEKVLGVDVNPHVVELFQRSIRDNHLEDRV 93

Query: 260 KIVRMSSKEFTQAMR 274
           +      ++F   + 
Sbjct: 94  EGRVCDLRDFRDGLP 108


>gi|254500462|ref|ZP_05112613.1| methyltransferase, FkbM family protein [Labrenzia alexandrii
           DFL-11]
 gi|222436533|gb|EEE43212.1| methyltransferase, FkbM family protein [Labrenzia alexandrii
           DFL-11]
          Length = 296

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 21/105 (20%)

Query: 176 RTLIYRQIENSFTQPNA-------------GINVHMLEWVLAATKGIQGDLLELYCGNGN 222
             L +R         N                   ML    A         ++L    G 
Sbjct: 57  EGLTFRIYPG----VNRDDWKIVAKDRLSEKAERKML----AQHFNKDAVFVDLGANIGT 108

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L  A    RV+AVE          YN+  N ++NV ++ +++ 
Sbjct: 109 HTLSAAELCARVIAVEANPDIAAKLAYNVELNKLDNVSVMSVAAG 153


>gi|195997797|ref|XP_002108767.1| hypothetical protein TRIADDRAFT_18638 [Trichoplax adhaerens]
 gi|190589543|gb|EDV29565.1| hypothetical protein TRIADDRAFT_18638 [Trichoplax adhaerens]
          Length = 373

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 213 LLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
           +++LY G G F L   +      V A E    +VEA   ++  N V     +    +++ 
Sbjct: 205 IVDLYAGIGYFVLPYLIHAKAKFVHACEWNPHAVEALEKSLILNKVREKCTVYFGDNRQH 264

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                 +R    L       +      + P R G 
Sbjct: 265 APKFIADRVNLGLLPTSRPGWHIACAALRPDRGGW 299


>gi|254831922|ref|ZP_05236577.1| hypothetical protein Lmon1_11235 [Listeria monocytogenes 10403S]
          Length = 201

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 30/113 (26%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  
Sbjct: 60  TGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVY 119

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           +                 ++ +  ++ I  +PP           ++A   I++
Sbjct: 120 D-----------------NVTANDYQAIISNPP-----------IRAGKRIVH 144


>gi|15608440|ref|NP_215816.1| hypothetical protein Rv1300 [Mycobacterium tuberculosis H37Rv]
 gi|148661088|ref|YP_001282611.1| hypothetical protein MRA_1308 [Mycobacterium tuberculosis H37Ra]
 gi|167969627|ref|ZP_02551904.1| HemK [Mycobacterium tuberculosis H37Ra]
 gi|306775472|ref|ZP_07413809.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu001]
 gi|306971581|ref|ZP_07484242.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu010]
 gi|1322424|emb|CAA97733.1| PROBABLE HEMK PROTEIN HOMOLOG HEMK [Mycobacterium tuberculosis
           H37Rv]
 gi|148505240|gb|ABQ73049.1| HemK [Mycobacterium tuberculosis H37Ra]
 gi|308216020|gb|EFO75419.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu001]
 gi|308358949|gb|EFP47800.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu010]
          Length = 325

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           TV+   ++       F          +L W  A +   +  +++   G+G  ++ LA+H 
Sbjct: 95  TVSFGPVVLHVGPGVF--VPRPETEAILAWATAQSLPARPLIVDACTGSGALAVALAQHR 152

Query: 232 ------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R++ ++ +  +++ AR N A      V++VR      T  +  E +      +
Sbjct: 153 ANLGLKARIIGIDDSDCALDYARRNAAG---TPVELVRADVT--TPRLLPELDGQVDLMV 207

Query: 286 DIHSYRFKTIFVDP 299
               Y      ++P
Sbjct: 208 SNPPYIPDAAVLEP 221


>gi|332527816|ref|ZP_08403854.1| PUA domain-containing protein [Rubrivivax benzoatilyticus JA2]
 gi|332112211|gb|EGJ12187.1| PUA domain-containing protein [Rubrivivax benzoatilyticus JA2]
          Length = 393

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  +C  G FS+  LA     V +++ + P++E  + ++  N  +  +     + +  
Sbjct: 220 RVLNCFCYTGGFSVAALAGGARHVTSIDSSAPALERVQAHVELNGFDAARSRTQDA-DVN 278

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           Q +R E +            R+  I +DPP+  
Sbjct: 279 QFLRDELK---------AGQRYDAIVLDPPKFA 302


>gi|325143479|gb|EGC65800.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis M01-240013]
 gi|325206969|gb|ADZ02422.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis M04-240196]
          Length = 273

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 81/232 (34%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V   +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRTSDISTPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIASNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
                G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLLQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|320104675|ref|YP_004180266.1| type 12 methyltransferase [Isosphaera pallida ATCC 43644]
 gi|319751957|gb|ADV63717.1| Methyltransferase type 12 [Isosphaera pallida ATCC 43644]
          Length = 265

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 9/114 (7%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVE 245
             I   + +            +L+L CG G+ +L LAR   R      V  ++ A  ++ 
Sbjct: 52  RAILSELTKLARRLGPPRPLRILDLACGGGDVALDLARRAPRRGLSVVVTGIDRAAEAIA 111

Query: 246 AARYNIAANHVNNV-KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            AR   A   ++N            +    R               RF  +   
Sbjct: 112 LAREQAARAGLSNCLHFETADV--LSDPWPRAPRTFGDTCSIKDDGRFDVVTCS 163


>gi|315148531|gb|EFT92547.1| protein-(glutamine-N5) methyltransferase [Enterococcus faecalis
           TX4244]
          Length = 277

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L A       ++++  G G  ++ L  AR   RV+A+++++ ++  A+ N  
Sbjct: 97  TEELVERCLKANPDTPLTVVDVGTGTGAIAISLKLARPNWRVIAIDLSEEALTVAKQNAQ 156

Query: 253 ANHVNNVKIVRMS 265
               + ++    +
Sbjct: 157 VLGAD-IEFYHGN 168


>gi|295107738|emb|CBL21691.1| Predicted deacylase [Ruminococcus obeum A2-162]
          Length = 817

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 197 HMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            M E  +        +     +L++ CG G FS++LA+   +V  +++    ++ AR   
Sbjct: 606 AMAERWMREIHAQLPEEKNLKILDVGCGAGFFSILLAKEGYQVTGIDLTPDMIKNARLLA 665

Query: 252 AANHVNNVKIVRMSSK 267
               V+  +   M ++
Sbjct: 666 EEEKVS-CEFQVMDAE 680


>gi|239939734|ref|ZP_04691671.1| putative methyltransferase [Streptomyces roseosporus NRRL 15998]
 gi|239986219|ref|ZP_04706883.1| putative methyltransferase [Streptomyces roseosporus NRRL 11379]
 gi|291443165|ref|ZP_06582555.1| methyltransferase type 11 [Streptomyces roseosporus NRRL 15998]
 gi|291346112|gb|EFE73016.1| methyltransferase type 11 [Streptomyces roseosporus NRRL 15998]
          Length = 246

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           A     ++             +L+L CG G F + LA     V  V+++   +E AR
Sbjct: 23  AESAAALVASSPLLDFPPGTRVLDLCCGPGLFVVPLAGRGYEVTGVDLSPSMLERAR 79


>gi|218900454|ref|YP_002448865.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus G9842]
 gi|218544940|gb|ACK97334.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus G9842]
          Length = 283

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 44/164 (26%)

Query: 164 RDYVDERLTVAGRTLIYRQIEN---------------SFTQPNAGI------NVHM---- 198
           R+ ++E    +    I++ +E                SF   N  +         +    
Sbjct: 44  REEINEEQEASFTEFIHKHVEGIPIQYMIGYEMFYGRSFF-VNEEVLIPRPETEELIVGV 102

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  A   
Sbjct: 103 LERIERHFGDKELHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKALGA 162

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V                      L        +   +  +PP
Sbjct: 163 E-VTFYHGDL---------------LSPFHKTGQKLDVVVSNPP 190


>gi|114564747|ref|YP_752261.1| hypothetical protein Sfri_3595 [Shewanella frigidimarina NCIMB 400]
 gi|114336040|gb|ABI73422.1| conserved hypothetical protein [Shewanella frigidimarina NCIMB 400]
          Length = 335

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E+V A ++G    +L L+          A     +V+ V+ +  ++ A + N   N+V +
Sbjct: 139 EYVRANSQGKS--VLNLFSYTCGIGTAAAMGGARKVMNVDFSSFALAAGQKNAELNNVTD 196

Query: 259 -VKIVRMSSKEFTQAMRREREFNRL-----KDIDIHSYRFKTIFVDPPRSGLDD 306
             + V+  +    + +       R      K   +   +F  +F+DPPR     
Sbjct: 197 VCEFVQSDAFPALRQLAGLPIGGRRNQKLPKYPKLRVTQFDLVFLDPPRFAKSA 250


>gi|330467619|ref|YP_004405362.1| type 11 methyltransferase [Verrucosispora maris AB-18-032]
 gi|328810590|gb|AEB44762.1| type 11 methyltransferase [Verrucosispora maris AB-18-032]
          Length = 269

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R  ENS          ++L             +L++ CG G  ++ LA      R
Sbjct: 18  RSHRWRTAENS--------AAYLL-----PHLAPGSSVLDVGCGPGTITVDLAARVAPGR 64

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           V AVEI   +++ AR    A    N+       
Sbjct: 65  VTAVEITDDALQLARTEADARGQGNIDFAVADV 97


>gi|323452819|gb|EGB08692.1| N6-adenine specific methyltransferase-like protein, HemK
           [Aureococcus anophagefferens]
          Length = 368

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 19/138 (13%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI----QGDLLELYCGNGNFSLV- 226
           + A    +Y   E++F          +L+ + A    +       ++E+  G+G  S   
Sbjct: 23  SFADWDAVYEPAEDTFL---------LLDALFAERSSLRALGDATVVEVGPGSGVVSAYV 73

Query: 227 ---LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS-SKEFTQAMRREREFNRL 282
              LA    RV+ V++   +   +    AAN    V +VR   +    +     R+ +R 
Sbjct: 74  AALLAAQAPRVVCVDVNPRACALSARTAAANGAR-VDVVRGDLATRVRRRPSAARKASRG 132

Query: 283 KDIDIHSYRFKTIFVDPP 300
               +       +  +PP
Sbjct: 133 ARRCLARGSVDVLVFNPP 150


>gi|291005648|ref|ZP_06563621.1| hypothetical protein SeryN2_14104 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 511

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA    ++G +L+  CG G  S+ LA     VL  + ++ +V  AR N   +  +  +  
Sbjct: 337 LARDGWVRGAVLDPGCGTGENSIHLASLGHDVLGTDFSEIAVAQARLNAVEHGCS-ARFE 395

Query: 263 RMSS 266
              +
Sbjct: 396 VSDA 399


>gi|282860305|ref|ZP_06269374.1| PUA domain protein [Prevotella bivia JCVIHMP010]
 gi|282586902|gb|EFB92138.1| PUA domain protein [Prevotella bivia JCVIHMP010]
          Length = 403

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 14/109 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L         +L ++C  G FS+   R     V +V+ +  +VE    NIA N   N   
Sbjct: 224 LLEYYAKGRSVLNMFCYTGGFSVYAMRGGAKEVHSVDSSAKAVELTNKNIALN-FPNDDR 282

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                ++  + +            D H+ ++  I +DPP      + + 
Sbjct: 283 HAAYCEDAFKYL------------DEHNGKYDLIILDPPAFAKHRSALK 319


>gi|209522375|ref|ZP_03270990.1| ribosomal protein L11 methyltransferase [Burkholderia sp. H160]
 gi|209497193|gb|EDZ97433.1| ribosomal protein L11 methyltransferase [Burkholderia sp. H160]
          Length = 300

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR+N   NH 
Sbjct: 156 MEWIEQSVKAGQS-VLDYGCGSGILAI-LAKKCGADPVIGIDIDPQAVESARHNSERNHA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|72160642|ref|YP_288299.1| hypothetical protein Tfu_0238 [Thermobifida fusca YX]
 gi|71914374|gb|AAZ54276.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 494

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 17/94 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            G     L+L  G G  SL LA    RV A ++   ++   R + A + V+NV+  + S 
Sbjct: 152 DGPVERALDLGSGCGVQSLHLAERATRVCATDVNPRALWMTRLSCALSGVDNVETRQGSL 211

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            E                  +   RF  I  +PP
Sbjct: 212 YE-----------------PVQGERFDLIVSNPP 228


>gi|46446677|ref|YP_008042.1| hypothetical protein pc1043 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400318|emb|CAF23767.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 390

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%)

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK-------TKICLDRDYV 167
               V     + +D+        L +    R    + I  + K        K     +  
Sbjct: 119 QDVFVLQSSTKGIDELKPWIIETLNELFQPRSIFEKSILPSRKEEGLADVQKHLSGEEVG 178

Query: 168 DERLTVAGRTLIY-----RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
           D  ++     L +     +  +  F       +  M +W+   +   +  +L  +   G 
Sbjct: 179 D--ISFFENGLKFTTNLHKSQKTGFF----LDHREMRQWIKTLSFNKK--VLNAFSYTGG 230

Query: 223 FSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRREREF 279
           FS+  +A    RV +V+I++ +V A + +   N ++    + +      F +    + + 
Sbjct: 231 FSVYAMAGGAKRVDSVDISQEAVNACQKHFVLNELSEFGSRFICADVFNFLREDVLDYDL 290

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
             L        +   I        ++   +  +     +L  SC
Sbjct: 291 VILDPPAFAKKQKDVIAACRGYKDINRLAMQKMPRRSLLLTCSC 334


>gi|326495568|dbj|BAJ85880.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 246

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            G L++ + G G  ++  A   + V AV+I    ++ A++N     V +++  +      
Sbjct: 74  AGILIDCFTGVGGNTIQFAAKCNHVFAVDIDPQKIDCAQHNATVYGVNDHIDFIIGDFIR 133

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKT 294
               ++ E  F           +   
Sbjct: 134 IAPHLKGETVFMSPPWGGPDYAKVDV 159


>gi|288916265|ref|ZP_06410644.1| Methyltransferase type 11 [Frankia sp. EUN1f]
 gi|288352244|gb|EFC86442.1| Methyltransferase type 11 [Frankia sp. EUN1f]
          Length = 225

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             LA    ++G +L++ CG G  +L+ A     V+ V+ +  ++E A+   A   +    
Sbjct: 42  QALANAGRLRGRVLDVGCGTGEHALLAASLGLDVVGVDTSALAIERAKAKAAERGLRARF 101

Query: 261 IVR-----MSSKEFTQAMRREREFNRLKDIDIHSY 290
            V          E    +     F+ L D D  +Y
Sbjct: 102 RVENALRLADLPERFDTVLDCGLFHVLTDEDREAY 136


>gi|227548104|ref|ZP_03978153.1| possible methyltransferase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079830|gb|EEI17793.1| possible methyltransferase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 194

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 15/107 (14%)

Query: 209 IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           I   +L+L+ G+G   L   +R    V+ VE    +V+   YN +     NV +  + + 
Sbjct: 43  IDQTVLDLFAGSGALGLEAASRGASEVVLVENDPRAVKVIEYNASVVGHPNVHVEPVKAS 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            +     R                F  +  DPP    D++   M+ A
Sbjct: 103 TYLARAPR--------------NHFSMVLADPPYDLADESVAEMLAA 135


>gi|218288634|ref|ZP_03492911.1| ribosomal protein L11 methyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241291|gb|EED08466.1| ribosomal protein L11 methyltransferase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 316

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA 252
               M   +LA        ++++  G G  ++  A    +RV+A+++   +V AA  N+ 
Sbjct: 162 QTTQMCAEILAEVVRPGMRVVDVGTGTGVLAIAAALVGAERVVAIDLDPVAVSAATDNVR 221

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N + +   VR    +   A+R +  F    D+ + +     +    P
Sbjct: 222 KNGLEDRVDVR--QGDLLAALRPDETF----DLAVANILRDVVIALVP 263


>gi|213964420|ref|ZP_03392620.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
           SK46]
 gi|213952613|gb|EEB63995.1| RNA methyltransferase, RsmD family [Corynebacterium amycolatum
           SK46]
          Length = 188

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 15/104 (14%)

Query: 212 DLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L+ G+G   L  A    R V+ VE    ++ A   NI      +V +  M    + 
Sbjct: 47  RVLDLFAGSGALGLEAASRGARSVVLVENDPNAIAAIEKNIRTVGHPDVAVSPMKVSSYL 106

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                E               F  +  DPP     +A   M++A
Sbjct: 107 AGAPGEP--------------FDRVIADPPYELAGEAVTEMLEA 136


>gi|239917256|ref|YP_002956814.1| 16S rRNA m(2)G 1207 methyltransferase [Micrococcus luteus NCTC
           2665]
 gi|281414266|ref|ZP_06246008.1| 16S rRNA m(2)G 1207 methyltransferase [Micrococcus luteus NCTC
           2665]
 gi|239838463|gb|ACS30260.1| 16S rRNA m(2)G 1207 methyltransferase [Micrococcus luteus NCTC
           2665]
          Length = 211

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 21/111 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
               G  L++  G G  +L LA       V AVE+   S++  R N AA  + NV  V +
Sbjct: 61  PPATGRFLDVGAGWGPIALTLALRSPEAEVTAVEVNDRSLQLTRDNAAALGLGNV--VAL 118

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             ++  +                    F  I+ +PP      A   +++ +
Sbjct: 119 RPEDVPE-----------------GAEFDLIWSNPPIRIGKPALHALLERW 152


>gi|20089993|ref|NP_616068.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
 gi|19914958|gb|AAM04548.1| ribosomal RNA adenine dimethylase [Methanosarcina acetivorans C2A]
          Length = 275

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 28/61 (45%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               +L++  G G  ++ LA     V AVE +   +   + NI A  +NNV  ++   ++
Sbjct: 61  PDSKVLDIGAGPGTLTIPLADMVKHVTAVEPSDGMLYCLKENIKAKELNNVSWIQKKWED 120

Query: 269 F 269
            
Sbjct: 121 I 121


>gi|330465373|ref|YP_004403116.1| type 11 methyltransferase [Verrucosispora maris AB-18-032]
 gi|328808344|gb|AEB42516.1| methyltransferase type 11 [Verrucosispora maris AB-18-032]
          Length = 362

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 5/104 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAA 253
              L  V A        + ++ CG G  S+ LAR +    V  +++   ++  A  N A 
Sbjct: 167 AQQLPDVHARLDAPGRRIADVACGTGWSSIALARAYPQAEVTGLDLDGAALRQAERNAAE 226

Query: 254 NH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               + V+     + +    +  E +   L D      +   + 
Sbjct: 227 AGVADRVRFACRDAAD--PQLAGEYDLVCLFDALHEVSQPVAVL 268


>gi|331242953|ref|XP_003334121.1| hypothetical protein PGTG_15358 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309313111|gb|EFP89702.1| hypothetical protein PGTG_15358 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 236

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 199 LEWVLAATKGIQGDL-LELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANH 255
           L   +       GDL ++L CG G  S  L R   FDRV+ V+ +KP +E A+       
Sbjct: 26  LYQAIMDYHQASGDLAIDLGCGTGIVSAELVRQGRFDRVVGVDPSKPMLEYAKKT----- 80

Query: 256 VNNVKIVRMSSKEF 269
           + N + V   ++  
Sbjct: 81  ITNAEFVHGRAESL 94


>gi|292655627|ref|YP_003535524.1| putative DNA methylase [Haloferax volcanii DS2]
 gi|291370592|gb|ADE02819.1| predicted DNA methylase [Haloferax volcanii DS2]
          Length = 208

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 2/104 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYN 250
             +  H++             +L+L  G G   L  A R   RV+ VE+   ++  A  N
Sbjct: 31  PDLAAHLVHLADLRGDIEGATVLDLGSGTGMLGLGAALRSPARVVGVELDDDALATATDN 90

Query: 251 IAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
                 +  +  +R  +      +  +R+   L +    + R  
Sbjct: 91  ARRVGASAPIDWIRADATRLPLCLPDDRQVTVLMNPPFGAQRGN 134


>gi|229196343|ref|ZP_04323091.1| Methyltransferase [Bacillus cereus m1293]
 gi|228587197|gb|EEK45267.1| Methyltransferase [Bacillus cereus m1293]
          Length = 206

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       +
Sbjct: 1   MEKLILQYAPPHSHILDLCCGTGHLTKKLIENHFVVTGIDGSAQMIEYARQNA-----PD 55

Query: 259 VKIVRMSSKEF 269
              +   ++ F
Sbjct: 56  AAFIVDDARYF 66


>gi|262201849|ref|YP_003273057.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Gordonia bronchialis DSM 43247]
 gi|262085196|gb|ACY21164.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Gordonia bronchialis DSM 43247]
          Length = 314

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 23/163 (14%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNG 221
           ++  R+      L        F  P       ++EW L      Q      +++L  G+G
Sbjct: 83  HITGRVGFGTVELA--VGPGVFI-PRPE-TELIVEWALRRLPSPQRRAPLRIVDLCSGSG 138

Query: 222 NFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRRERE 278
             +L +A       V+AVE+   ++   R N+        V + R    +   AM    +
Sbjct: 139 ALALAIAHRLPAAEVVAVEVDDAALTWLRRNVERLGPAGRVHVHRADVTD-HDAMSALFD 197

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI-LY 320
                           +  +PP           V   P + +Y
Sbjct: 198 ----------DASVDLVVSNPPYVPTTATVGAEVAHDPDLAVY 230


>gi|222100612|ref|YP_002535180.1| Methyltransferase type 11 [Thermotoga neapolitana DSM 4359]
 gi|221573002|gb|ACM23814.1| Methyltransferase type 11 [Thermotoga neapolitana DSM 4359]
          Length = 254

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +L         +L++ CG G F++ +A+    V+ V+++   ++ A       +V  V
Sbjct: 29  AKILENFHIRGKKVLDVACGEGTFAVEIAKQGFEVVGVDLSPEMLKFAVERAERENVP-V 87

Query: 260 KIVRMSS------KEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
             ++M        +EF          N L D D     FK ++ 
Sbjct: 88  VFLKMDMRDLSFQEEFDIVTCWFDSLNYLLDYDDLKRTFKGVWN 131


>gi|160899390|ref|YP_001564972.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Delftia
           acidovorans SPH-1]
 gi|160364974|gb|ABX36587.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Delftia
           acidovorans SPH-1]
          Length = 236

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             I   ML+            +LE+  G+G  + +LA     V+ +EI     E AR N+
Sbjct: 83  PRIESRMLQ---DLKIKPTDRVLEIGAGSGYMAALLAAQAKEVVTLEIVPELAEMARENL 139

Query: 252 AANHVNNVKI 261
               + N ++
Sbjct: 140 LGAGITNAEV 149


>gi|113869290|ref|YP_727779.1| methylase of polypeptide chain release factor [Ralstonia eutropha
           H16]
 gi|113528066|emb|CAJ94411.1| methylase of polypeptide chain release factor [Ralstonia eutropha
           H16]
          Length = 274

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 19/130 (14%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLA 236
            +R   +    P     V     +    +  Q  +L+L  G+G  ++ LAR     +V A
Sbjct: 66  KFRVTPDVLI-PRPDTEVAAEASLARLAEVPQPTVLDLGTGSGILAVTLARERRDAQVWA 124

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            +I+  ++  A+ N +A   + +  +                            RF  I 
Sbjct: 125 TDISPGALMVAQDNASALGADRIHFLVSD----------------WYAALPPGLRFHLIV 168

Query: 297 VDPPRSGLDD 306
            +PP     D
Sbjct: 169 SNPPYIAAGD 178


>gi|6690703|gb|AAF24271.1| BchM [Rhodobacter sphaeroides]
          Length = 222

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--SKEF 269
            +L+  CG G  +  LA    +V+AV+I+   VE AR  +   H + V        + + 
Sbjct: 62  RVLDAGCGAGQMTAELAARGAQVMAVDISPQLVEIARKRLPPEHQDRVTFASGDMLADDL 121

Query: 270 --TQAMRREREFNRLKDIDIHSY--------RFKTIFVDPPRSGLDDATVGMVQAYPH 317
                +          D DI +         R   +F   PR+    A   M + +P 
Sbjct: 122 GRFDYVVAMDSLIYYTDADIAAALDRLGARNRHSVVFTVAPRTPFLMAFWTMGKLFPR 179


>gi|39998193|ref|NP_954144.1| HemK family modification methylase [Geobacter sulfurreducens PCA]
 gi|39985139|gb|AAR36494.1| modification methylase, HemK family [Geobacter sulfurreducens PCA]
 gi|298507131|gb|ADI85854.1| peptide chain release factor methyltransferase [Geobacter
           sulfurreducens KN400]
          Length = 284

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 21/108 (19%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L++  G+G  ++ LA+     +V+ VE +  ++  A+ N  
Sbjct: 104 TEVIVEEALRRAPHAAA-VLDIGVGSGCIAVALAKQLPHAQVVGVEQSPGAIALAQRNAE 162

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +                        F  L D      RF  I  +PP
Sbjct: 163 RHGARVTLF-------------EGSLFEPLGDQ-----RFDLIVSNPP 192


>gi|116180640|ref|XP_001220169.1| hypothetical protein CHGG_00948 [Chaetomium globosum CBS 148.51]
 gi|88185245|gb|EAQ92713.1| hypothetical protein CHGG_00948 [Chaetomium globosum CBS 148.51]
          Length = 262

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 208 GIQGDLLELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRM 264
             +  +++++ G G    +  L+  +DRV+ +E    ++  A++N A   V +    V  
Sbjct: 78  PRKSTIIDIFAGAGGNTIAFALSEKWDRVIGIEKDAATLACAQHNAAVYGVADAITWVHG 137

Query: 265 SSKEFTQAMR----------REREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
              +F   ++           + +   L            IF  PP  G+ 
Sbjct: 138 DCLDFLARLKDHANGTSKGKGKGKKKELDPFLQLDVSSTVIFASPPWGGVS 188


>gi|238899146|ref|YP_002924828.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466906|gb|ACQ68680.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 285

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L+L  G G  +L L   R    ++  +I + +++ A +N     
Sbjct: 98  LVEQALKHIPRGASRVLDLGTGTGCIALALGHERSDCTIIGTDIKEETIKLASHNAKKLG 157

Query: 256 VNNVKIVRMS 265
           + ++   + +
Sbjct: 158 LPHLSFFQGN 167


>gi|239816693|ref|YP_002945603.1| methyltransferase type 11 [Variovorax paradoxus S110]
 gi|239803270|gb|ACS20337.1| Methyltransferase type 11 [Variovorax paradoxus S110]
          Length = 225

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   ML+            +LE+  G+G  + +LA    +VL++EI       A   +
Sbjct: 71  PKVEARMLQ---DLHVQKHESVLEIGTGSGFMAALLAHRAAQVLSLEIDPALAARAAETL 127

Query: 252 AANHVNNVKIVRMS 265
             N V NV++    
Sbjct: 128 RQNGVANVEVRNAD 141


>gi|221067155|ref|ZP_03543260.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Comamonas
           testosteroni KF-1]
 gi|220712178|gb|EED67546.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Comamonas
           testosteroni KF-1]
          Length = 236

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             I   ML+ V          +LE+  G+G  + +LA     V+ +EI     E AR N+
Sbjct: 83  PKIEARMLQDV---KIKPTDRVLEIGTGSGYMAALLAAQAKEVVTLEIDPELAEMARENL 139

Query: 252 AANHVNNVKI 261
            +  V NV++
Sbjct: 140 LSAGVKNVEV 149


>gi|13475202|ref|NP_106766.1| methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14025953|dbj|BAB52552.1| methyltransferase [Mesorhizobium loti MAFF303099]
          Length = 258

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G    +LEL CG G  +  LA+    V+ ++I+   ++ A  + A   V  V+ V    +
Sbjct: 54  GQGSSVLELGCGYGRITNRLAKKGAHVVGLDISPILLKEAETDAAERGVK-VEYVLGDMR 112

Query: 268 ------EFTQAMRREREFNRLKDID 286
                  F  A      F    D D
Sbjct: 113 SLPWRDRFDAAFLWYTTFGYFDDAD 137


>gi|322385290|ref|ZP_08058935.1| protein-(glutamine-N5) methyltransferase [Streptococcus cristatus
           ATCC 51100]
 gi|321270549|gb|EFX53464.1| protein-(glutamine-N5) methyltransferase [Streptococcus cristatus
           ATCC 51100]
          Length = 276

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 37/192 (19%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E     RD L A     QL+       I    D+    L V  R LI R           
Sbjct: 46  EVNQEDRDQLKAI--HEQLLAHKPAQYIIGSSDFHGLTLKVDERVLIPRPE--------- 94

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYN 250
                ++E +L+        +L++  G+G  +L LA  R   ++ A ++++ ++  A  N
Sbjct: 95  --TEELVELILSENPEKSLSVLDIGTGSGAIALALANSRPDWQITASDLSEDALALAAEN 152

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDA 307
             +  ++ +  V+    E                    S  F  I  +PP    +  D+ 
Sbjct: 153 AQSCGLD-LAFVQSDCMEAI------------------SGTFDIIVSNPPYISEADKDEV 193

Query: 308 TVGMVQAYPHIL 319
            + ++ + PH+ 
Sbjct: 194 GLNVLTSEPHMA 205


>gi|258515753|ref|YP_003191975.1| Methyltransferase type 11 [Desulfotomaculum acetoxidans DSM 771]
 gi|257779458|gb|ACV63352.1| Methyltransferase type 11 [Desulfotomaculum acetoxidans DSM 771]
          Length = 263

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 13/110 (11%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L  G G    + AR       V+ V++    +  AR+N A+   +NV+      +  
Sbjct: 82  VLDLGSGAGFDVFLAARKVGPSGNVIGVDMTPEMISKARHNAASMGFSNVEFRLGEIEHL 141

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
             A                      I + P +  + +    +++    I+
Sbjct: 142 PVADSSVDVI----------ISNCVINLSPDKQAVFNEAFRVLKPGGKIV 181


>gi|226311719|ref|YP_002771613.1| hypothetical protein BBR47_21320 [Brevibacillus brevis NBRC 100599]
 gi|226094667|dbj|BAH43109.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 245

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           ER       L+YR  ++S        +  +   +        G +L+L CG+G  S  LA
Sbjct: 7   ERSFREDYVLVYRHRDDS------AADGEIANLLERLPVKDTGRVLDLCCGSGRHSRALA 60

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           R    V+ V+++   ++ A      N    +   R   ++ 
Sbjct: 61  RRGYEVVGVDLSPVLLQLAEE---QNTYPQLSFARCDMRDI 98


>gi|226311581|ref|YP_002771475.1| hypothetical protein BBR47_19940 [Brevibacillus brevis NBRC 100599]
 gi|226094529|dbj|BAH42971.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 249

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 199 LEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           L+WV    K  +    +++L CG G  ++ LA+   RV  V+++   +  A   +    V
Sbjct: 23  LDWVERHWKKGEKPVRVIDLGCGTGTIAIPLAKRGYRVTGVDLSTEMLAIAYDKMRQEQV 82

Query: 257 NNVKIVRMSSKEFT 270
             V  V    +E +
Sbjct: 83  E-VAWVEQDMRELS 95


>gi|254463817|ref|ZP_05077228.1| methyltransferase, UbiE/COQ5 family [Rhodobacterales bacterium Y4I]
 gi|206684725|gb|EDZ45207.1| methyltransferase, UbiE/COQ5 family [Rhodobacterales bacterium Y4I]
          Length = 211

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 1/96 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +LEL CG G+ ++ LA     ++A ++++  +   R        +NV          
Sbjct: 40  SDRVLELGCGTGSTAIALAPTAGEIIATDLSEEMLRVGRERAWNAAASNVDFRCCDVLSA 99

Query: 270 TQA-MRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                     FN L  +         I    P  GL
Sbjct: 100 PDGPFDAVMAFNLLHLVPDLEAALDAIAAKLPSGGL 135


>gi|170699982|ref|ZP_02891009.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           IOP40-10]
 gi|170135130|gb|EDT03431.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           IOP40-10]
          Length = 300

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LAR      V+ ++I   +VE+AR N   NH 
Sbjct: 156 MEWLERSVKPGQS-VLDYGCGSGILAI-LARKCGANPVVGIDIDPQAVESARQNSERNHA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|119944775|ref|YP_942455.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Psychromonas ingrahamii 37]
 gi|119863379|gb|ABM02856.1| adenine-specific modification methylase in HemK family protein
           [Psychromonas ingrahamii 37]
          Length = 303

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 30/195 (15%)

Query: 81  LLINAL-MIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR--LLDDAWRECAIR 137
             IN L  ++ +         RA+LF      +  D+AI  ++      LD        R
Sbjct: 8   EAINELLTVQDLLRWAATEFNRAELFYGHGTDNAWDEAIQLILPSLYLPLDSKPTILDAR 67

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRD---------YVDERLTVAGRTLIYRQIENSFT 188
           L            ++    +  +    +         YVDER T+  R+ I   IE  F 
Sbjct: 68  LTRREREMLVDRIIVRIEKRIPVAYLTNKAWFAGLEFYVDER-TLVPRSPIAELIEAHF- 125

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEA 246
                                   +L+L  G+G  ++  A  F    V AV+I++ +++ 
Sbjct: 126 --------------APWVDKAPKRILDLCTGSGCIAIACAYAFPEAEVDAVDISEDALDV 171

Query: 247 ARYNIAANHVNNVKI 261
           A  NI  + +     
Sbjct: 172 AEINIQGHGLEQQVF 186


>gi|91774053|ref|YP_566745.1| putative methyltransferase [Methanococcoides burtonii DSM 6242]
 gi|91713068|gb|ABE52995.1| tRNA (1-methyladenosine) methyltransferase [Methanococcoides
           burtonii DSM 6242]
          Length = 250

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                +L+   G+G  ++ L     RVL+ E+     E AR NI    ++NV++   +  
Sbjct: 94  NKNDTVLDAGTGSGILAMYLGSIAKRVLSFEVRDDFAEVARENIRRAGLDNVEVRCGNIV 153

Query: 268 EFTQAMRREREFNRLKDIDIHSYRF 292
           +  + +  + +   L  ID  +   
Sbjct: 154 DEVKELDEKFDIVTLDTIDSATIVP 178


>gi|167574653|ref|ZP_02367527.1| ribosomal protein L11 methyltransferase [Burkholderia oklahomensis
           C6786]
          Length = 300

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+      V  ++I   +VEAAR N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGSVTGIDIDPQAVEAARQNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|157127089|ref|XP_001654798.1| hypothetical protein AaeL_AAEL000284 [Aedes aegypti]
 gi|108884503|gb|EAT48728.1| conserved hypothetical protein [Aedes aegypti]
          Length = 223

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 195 NVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNI 251
            + ++ W+      +Q D  +++L CGNG   + LAR     +  V+ +  ++E A+   
Sbjct: 46  QLRIIRWIERQEDRVQQDDSIIDLGCGNGMMLIELAREGYSNLTGVDYSPKAIELAQSIA 105

Query: 252 AANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
               ++   K+V + ++    A+ R +  +     D  S           R    ++ V 
Sbjct: 106 KDQELDITYKVVDLLNESDVTALGRFKVVHDKGTYDAVSLHPDNFKQM--REKYIESVVQ 163

Query: 311 MVQAYPHILYISCN 324
           ++Q     +  SCN
Sbjct: 164 LLQDDGLFILTSCN 177


>gi|87300588|ref|ZP_01083430.1| hypothetical protein WH5701_04050 [Synechococcus sp. WH 5701]
 gi|87284459|gb|EAQ76411.1| hypothetical protein WH5701_04050 [Synechococcus sp. WH 5701]
          Length = 249

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR------VLAVEIAKPSVEAARYNIA 252
           +  + A  +G    +L+L CG G+ ++ LA    R      +   +I+  +V  AR N  
Sbjct: 54  IRELAARHQGTPLRVLDLACGGGDTAIDLALMARRSAIPLILEGCDISPGAVAIARANAE 113

Query: 253 ANHVNNVKIVRMSS 266
                  +  R  +
Sbjct: 114 RRGAK-ARFFRADA 126


>gi|114046305|ref|YP_736855.1| HemK family modification methylase [Shewanella sp. MR-7]
 gi|113887747|gb|ABI41798.1| modification methylase, HemK family [Shewanella sp. MR-7]
          Length = 286

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 19/108 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   ++ AV+  + +V  A+ N  
Sbjct: 100 TEILVETALNLPLESNAKVLDLGTGTGAIALALASERATWQITAVDKVEEAVALAKANRT 159

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              +  V+I++               F+ +K  D     F  I  +PP
Sbjct: 160 NLKLEQVEILQSD------------WFSAIKAHD-----FDLIVSNPP 190


>gi|115350559|ref|YP_772398.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           AMMD]
 gi|122324068|sp|Q0BIF9|PRMA_BURCM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|115280547|gb|ABI86064.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia ambifaria AMMD]
          Length = 300

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LAR      V+ ++I   +VE+AR N   NH 
Sbjct: 156 MEWLEQSVKPGQS-VLDYGCGSGILAI-LARKCGANPVVGIDIDPQAVESARQNSERNHA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|332976645|gb|EGK13486.1| ribosomal RNA small subunit methyltransferase D [Desmospora sp.
           8437]
          Length = 199

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKE 268
           G +L+L+ G+G+  L  L+R  +R + V+ +  SVE  R N+      +  ++ R  ++ 
Sbjct: 43  GSVLDLFAGSGSLGLETLSRGAERAVFVDHSPASVETVRKNLQVAGFADRAEVYRRDARA 102

Query: 269 FTQAMRREREFNRLKDID 286
             + + R +   R   +D
Sbjct: 103 ALRILARRKLSFRYIFLD 120


>gi|332529753|ref|ZP_08405707.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Hylemonella gracilis ATCC 19624]
 gi|332040774|gb|EGI77146.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Hylemonella gracilis ATCC 19624]
          Length = 226

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +++ V A     Q  +L +  G+G  + +LA+   +V+A+EI       AR N+
Sbjct: 70  PRVQARIVQDVAAQ---PQDKVLLVGAGSGYLAALLAKRSKQVIALEIDAELAALARANL 126

Query: 252 AANHVNNVKIVRMSSKEFTQA 272
               + N ++ +    +   A
Sbjct: 127 QKAGITNAQVQQADGSQGAPA 147


>gi|323174978|gb|EFZ60593.1| protein smtA [Escherichia coli LT-68]
          Length = 230

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFT 270
           N++ +  ++++  
Sbjct: 94  NMQFIHCAAQDVA 106


>gi|317123571|ref|YP_004097683.1| methyltransferase type 11 [Intrasporangium calvum DSM 43043]
 gi|315587659|gb|ADU46956.1| Methyltransferase type 11 [Intrasporangium calvum DSM 43043]
          Length = 251

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 212 DLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L+L  G G   L+ A+      + + +++    +E AR N     ++N + V    + 
Sbjct: 83  TVLDLGSGAGGDVLISAKRVAPGGKAIGIDMTPEMLELARANAREAGIDNAEFVEGYLEH 142

Query: 269 F 269
            
Sbjct: 143 I 143


>gi|229138805|ref|ZP_04267386.1| Methyltransferase [Bacillus cereus BDRD-ST26]
 gi|228644721|gb|EEL00972.1| Methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 206

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       +
Sbjct: 1   MEKLILQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA-----PD 55

Query: 259 VKIVRMSSKEF 269
              +   ++ F
Sbjct: 56  AAFIVDDARYF 66


>gi|219682102|ref|YP_002468486.1| HemK protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219621835|gb|ACL29991.1| HemK protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311085915|gb|ADP65997.1| HemK protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086486|gb|ADP66567.1| HemK protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087069|gb|ADP67149.1| HemK protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
 gi|311087621|gb|ADP67700.1| HemK protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 277

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 13/108 (12%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  ++++    L V+  TLI R                ++E  L+  K     +L+L  G
Sbjct: 71  IIKEKEFWSLSLCVSYDTLIPRPD-----------TEILVERALSKIKSNSACILDLGTG 119

Query: 220 NGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            G  +L LA       ++ ++ ++ ++  AR N +  +  NV      
Sbjct: 120 CGAIALALASINSNWNIIGIDKSENALAIARINASKLNFKNVTFFFSD 167


>gi|270308642|ref|YP_003330700.1| hypothetical protein DhcVS_1271 [Dehalococcoides sp. VS]
 gi|270154534|gb|ACZ62372.1| hypothetical protein DhcVS_1271 [Dehalococcoides sp. VS]
          Length = 277

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 182 QIENSFTQ---------PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
                F Q          N      +L+ +L  T    G LL++  G G+F++ LA H  
Sbjct: 36  HSREDFWQKYQTWMSLYVNRDYPGKLLDRILDITH-QGGSLLDIGAGAGSFAIPLALHGV 94

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            V AVE +     A    I    + N++IV    +    
Sbjct: 95  NVTAVEPSPRQSGALAKEIQKESLANIRIVHDEWEALLP 133


>gi|111223045|ref|YP_713839.1| putative methyltransferase [Frankia alni ACN14a]
 gi|111150577|emb|CAJ62278.1| Putative methyltransferase [Frankia alni ACN14a]
          Length = 283

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 183 IENSFTQPNA-----GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVL 235
              +F   +A     G+  +   ++ AA       +L++ CG+G  +L  AR      VL
Sbjct: 21  SGGAFWVAHADRFDEGVAAYRDRFLAAAAIDETAAVLDVGCGSGRTTLDAARRATAGSVL 80

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            V+++   +E AR      HV NV   +  +
Sbjct: 81  GVDLSAQMLELARRRAEREHVTNVTFEQADA 111


>gi|91782418|ref|YP_557624.1| putative methyltransferase [Burkholderia xenovorans LB400]
 gi|91686372|gb|ABE29572.1| Putative methyltransferase [Burkholderia xenovorans LB400]
          Length = 250

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           P       +     A        +L++ CG G+ S  +A H   V+A +IA   +     
Sbjct: 22  PTHATGADLRTLAEAIAATPDATVLDMGCGAGHASFAVAPHAKAVVAYDIAPQMLATVEG 81

Query: 250 NIAANHVNNVKIVRMSSK 267
                 + N++  + +++
Sbjct: 82  AAKERGLANIRTQQGAAE 99


>gi|77734469|emb|CAJ26222.1| hypothetical protein [Thermotoga neapolitana]
 gi|77734471|emb|CAJ26223.1| hypothetical protein [Thermotoga neapolitana]
          Length = 207

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +L         +L++ CG G F++ +A+    V+ V+++   ++ A       +V  V
Sbjct: 4   AKILENFHIRGKKVLDVACGEGTFAVEIAKQGFEVVGVDLSPEMLKFAVERAERENVP-V 62

Query: 260 KIVRMSS------KEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
             ++M        +EF          N L D D     FK ++ 
Sbjct: 63  VFLKMDMRDLSFQEEFDIVTCWFDSLNYLLDYDDLKRTFKGVWN 106


>gi|15616791|ref|NP_240003.1| HemK protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219681546|ref|YP_002467931.1| HemK protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471229|ref|ZP_05635228.1| HemK protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|11132929|sp|P57269|HEMK_BUCAI RecName: Full=Protein methyltransferase hemK homolog; AltName:
           Full=M.BusHemKP
 gi|25403559|pir||A84950 hemK protein [imported] - Buchnera sp. (strain APS)
 gi|10038854|dbj|BAB12889.1| hemK protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|219624389|gb|ACL30544.1| HemK protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 277

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 13/108 (12%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I  ++++    L V+  TLI R                ++E  L+  K     +L+L  G
Sbjct: 71  IIKEKEFWSLSLCVSYDTLIPRPD-----------TEILVERALSKIKSNSACILDLGTG 119

Query: 220 NGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            G  +L LA       ++ ++ ++ ++  AR N +  +  NV      
Sbjct: 120 CGAIALALASINSNWNIIGIDKSENALAIARINASKLNFKNVTFFFSD 167


>gi|31792493|ref|NP_854986.1| hypothetical protein Mb1332 [Mycobacterium bovis AF2122/97]
 gi|148822518|ref|YP_001287272.1| hypothetical protein TBFG_11327 [Mycobacterium tuberculosis F11]
 gi|215403142|ref|ZP_03415323.1| hypothetical protein Mtub0_05481 [Mycobacterium tuberculosis
           02_1987]
 gi|215410939|ref|ZP_03419747.1| hypothetical protein Mtub9_06320 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426622|ref|ZP_03424541.1| hypothetical protein MtubT9_09609 [Mycobacterium tuberculosis T92]
 gi|215445478|ref|ZP_03432230.1| hypothetical protein MtubT_05888 [Mycobacterium tuberculosis T85]
 gi|218753008|ref|ZP_03531804.1| hypothetical protein MtubG1_05990 [Mycobacterium tuberculosis GM
           1503]
 gi|253799654|ref|YP_003032655.1| hypothetical protein TBMG_02680 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231558|ref|ZP_04924885.1| hypothetical protein hemK [Mycobacterium tuberculosis C]
 gi|254364197|ref|ZP_04980243.1| hypothetical protein hemK [Mycobacterium tuberculosis str. Haarlem]
 gi|254550308|ref|ZP_05140755.1| hypothetical protein Mtube_07589 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260186239|ref|ZP_05763713.1| hypothetical protein MtubCP_09453 [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200353|ref|ZP_05767844.1| hypothetical protein MtubT4_09543 [Mycobacterium tuberculosis T46]
 gi|260204558|ref|ZP_05772049.1| hypothetical protein MtubK8_09658 [Mycobacterium tuberculosis K85]
 gi|289442739|ref|ZP_06432483.1| hypothetical protein TBLG_03482 [Mycobacterium tuberculosis T46]
 gi|289446895|ref|ZP_06436639.1| hypothetical protein hemK [Mycobacterium tuberculosis CPHL_A]
 gi|289554910|ref|ZP_06444120.1| hypothetical protein hemK [Mycobacterium tuberculosis KZN 605]
 gi|289573963|ref|ZP_06454190.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289745046|ref|ZP_06504424.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749854|ref|ZP_06509232.1| hypothetical protein hemK [Mycobacterium tuberculosis T92]
 gi|289757400|ref|ZP_06516778.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761455|ref|ZP_06520833.1| hypothetical protein hemK [Mycobacterium tuberculosis GM 1503]
 gi|294994857|ref|ZP_06800548.1| hypothetical protein Mtub2_10184 [Mycobacterium tuberculosis 210]
 gi|297633852|ref|ZP_06951632.1| hypothetical protein MtubK4_07004 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730839|ref|ZP_06959957.1| hypothetical protein MtubKR_07094 [Mycobacterium tuberculosis KZN
           R506]
 gi|298524804|ref|ZP_07012213.1| hypothetical protein hemK [Mycobacterium tuberculosis 94_M4241A]
 gi|306781617|ref|ZP_07419954.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu002]
 gi|306784024|ref|ZP_07422346.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu003]
 gi|306788387|ref|ZP_07426709.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu004]
 gi|306792714|ref|ZP_07431016.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu005]
 gi|306797120|ref|ZP_07435422.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu006]
 gi|306803000|ref|ZP_07439668.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu008]
 gi|306807190|ref|ZP_07443858.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu007]
 gi|306967389|ref|ZP_07480050.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu009]
 gi|313658171|ref|ZP_07815051.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Mycobacterium tuberculosis KZN V2475]
 gi|31618082|emb|CAD94193.1| PROBABLE HEMK PROTEIN HOMOLOG HEMK [Mycobacterium bovis AF2122/97]
 gi|124600617|gb|EAY59627.1| hypothetical protein hemK [Mycobacterium tuberculosis C]
 gi|134149711|gb|EBA41756.1| hypothetical protein hemK [Mycobacterium tuberculosis str. Haarlem]
 gi|148721045|gb|ABR05670.1| hypothetical protein hemK [Mycobacterium tuberculosis F11]
 gi|253321157|gb|ACT25760.1| hypothetical protein hemK [Mycobacterium tuberculosis KZN 1435]
 gi|289415658|gb|EFD12898.1| hypothetical protein TBLG_03482 [Mycobacterium tuberculosis T46]
 gi|289419853|gb|EFD17054.1| hypothetical protein hemK [Mycobacterium tuberculosis CPHL_A]
 gi|289439542|gb|EFD22035.1| hypothetical protein hemK [Mycobacterium tuberculosis KZN 605]
 gi|289538394|gb|EFD42972.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289685574|gb|EFD53062.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690441|gb|EFD57870.1| hypothetical protein hemK [Mycobacterium tuberculosis T92]
 gi|289708961|gb|EFD72977.1| hypothetical protein hemK [Mycobacterium tuberculosis GM 1503]
 gi|289712964|gb|EFD76976.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|298494598|gb|EFI29892.1| hypothetical protein hemK [Mycobacterium tuberculosis 94_M4241A]
 gi|308325579|gb|EFP14430.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu002]
 gi|308331257|gb|EFP20108.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu003]
 gi|308335073|gb|EFP23924.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu004]
 gi|308338881|gb|EFP27732.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu005]
 gi|308342495|gb|EFP31346.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu006]
 gi|308346429|gb|EFP35280.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu007]
 gi|308350300|gb|EFP39151.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu008]
 gi|308355001|gb|EFP43852.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu009]
 gi|326902922|gb|EGE49855.1| hypothetical protein hemK [Mycobacterium tuberculosis W-148]
 gi|328459400|gb|AEB04823.1| hypothetical protein hemK [Mycobacterium tuberculosis KZN 4207]
          Length = 325

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           TV+   ++       F          +L W  A +   +  +++   G+G  ++ LA+H 
Sbjct: 95  TVSFGPVVLHVGPGVF--VPRPETEAILAWATAQSLPARPLIVDACTGSGALAVALAQHR 152

Query: 232 ------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R++ ++ +  +++ AR N A      V++VR      T  +  E +      +
Sbjct: 153 ANLGLKARIIGIDDSDCALDYARRNAAG---TPVELVRADVT--TPCLLPELDGQVDLMV 207

Query: 286 DIHSYRFKTIFVDP 299
               Y      ++P
Sbjct: 208 SNPPYIPDAAVLEP 221


>gi|315646847|ref|ZP_07899962.1| hypothetical protein PVOR_15779 [Paenibacillus vortex V453]
 gi|315277777|gb|EFU41101.1| hypothetical protein PVOR_15779 [Paenibacillus vortex V453]
          Length = 278

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V  +      ++L++  G G+ +  LA    RV A ++ +  +  A   I  N   NV  
Sbjct: 51  VSCSQADQTMEVLDIATGGGHVANALAPLVRRVTAFDLTEEMLTTAAAFIHGNGHTNVDF 110

Query: 262 VRMSSKEF 269
           V+  +++ 
Sbjct: 111 VQGDAEQL 118


>gi|268322269|emb|CBH32791.1| putative dehydrogenase [Streptomyces sp. C23201NS3]
          Length = 776

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           I GD+L++ CG G+ +  LA    RV AV++++ +V+ A    +A  V  V+     +  
Sbjct: 583 ITGDVLDVGCGLGDNAAFLASQGHRVTAVDVSQIAVDEASARASAKGVE-VEFAVTDATR 641

Query: 269 FT 270
            T
Sbjct: 642 LT 643


>gi|255743905|ref|ZP_05417860.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholera
           CIRS 101]
 gi|255738388|gb|EET93778.1| ribosomal RNA small subunit methyltransferase D [Vibrio cholera
           CIRS 101]
          Length = 169

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+           L+L+ G+G      A R  ++V  +E+   + +    N+ 
Sbjct: 16  VKETLFNWLAQEVPN--ARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFQQLTTNVQ 73

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 74  SLKAENIELIHTDALAFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 118

Query: 312 VQ-----AYPHILYISC 323
           ++     A   ++YI C
Sbjct: 119 LEQNGWLAPQAMIYIEC 135


>gi|238059740|ref|ZP_04604449.1| SAM-dependent methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237881551|gb|EEP70379.1| SAM-dependent methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 194

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
                 +    G  L+  CG G  ++ LA    +V AV+I+  ++  A     A+     
Sbjct: 9   YLARETSGLAPGTALDAGCGAGAEAIWLASRGWQVTAVDISAEALARAAQRATASGASER 68

Query: 259 VKIVRMSS 266
           ++ +   +
Sbjct: 69  LRWIEADA 76


>gi|269127643|ref|YP_003301013.1| methyltransferase [Thermomonospora curvata DSM 43183]
 gi|268312601|gb|ACY98975.1| methyltransferase [Thermomonospora curvata DSM 43183]
          Length = 186

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 15/103 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            + +L+ G+G   L  L+R     L VE    +V+  R NI    +    +V    +   
Sbjct: 48  RVADLFAGSGAVGLEALSRGAACALLVESHPRAVKVIRRNIETLGLPGAHLVADRVERVL 107

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           +    E               +  IF+DPP +  D+A  G+++
Sbjct: 108 RRPPEEP--------------YDLIFLDPPYALADEAVTGLLE 136


>gi|257051616|ref|YP_003129449.1| methyltransferase small [Halorhabdus utahensis DSM 12940]
 gi|256690379|gb|ACV10716.1| methyltransferase small [Halorhabdus utahensis DSM 12940]
          Length = 211

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 21/136 (15%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYN 250
             +  H++             +++L CG G  +L  A     +VL V++    +  AR N
Sbjct: 31  PTVAAHLVHLADLNDDVAGRTVVDLGCGTGMLALAAALRGPSQVLGVDVDPSPLSTARAN 90

Query: 251 IAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDD 306
                    V  VR  + E                  +      T+ ++PP   +SG + 
Sbjct: 91  RRRIGTQTTVSWVRADATE----------------PPLCPSDPVTVVMNPPFGAQSGNEH 134

Query: 307 ATVGMVQAYPHILYIS 322
           A    +     I  +S
Sbjct: 135 ADRAFLATAADIASVS 150


>gi|118472427|ref|YP_887357.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium smegmatis str. MC2 155]
 gi|118173714|gb|ABK74610.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium smegmatis str. MC2 155]
          Length = 225

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                  + G +L++ CG G+ ++ LA+   RV A++I+  ++  A    A   V+ V  
Sbjct: 43  AWEQAGLVHGHVLDIGCGLGDNAIYLAQQGYRVTALDISPTALITAERRAADAGVD-VTF 101

Query: 262 VRMSSKEF 269
               +   
Sbjct: 102 AVADATRL 109


>gi|323356746|ref|YP_004223142.1| 16S RNA G1207 methylase RsmC [Microbacterium testaceum StLB037]
 gi|323273117|dbj|BAJ73262.1| 16S RNA G1207 methylase RsmC [Microbacterium testaceum StLB037]
          Length = 214

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  SL LA       V AV++ + +++  R N  +  + NV  VR
Sbjct: 56  PPPAGGHFLDLGCGWGPISLSLALSSPHATVWAVDVNERALDLVRRNAESLGLTNVNAVR 115


>gi|315656587|ref|ZP_07909474.1| methyltransferase (methylase) [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492542|gb|EFU82146.1| methyltransferase (methylase) [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 186

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI- 251
           +   M   +L +       +L+L+ G+G   L  L+R     + V+ A  + +  R NI 
Sbjct: 28  VREAMFSHLLCSGFPQGATVLDLFAGSGALGLEALSRGGASAVFVDAAGSAAKVLRANID 87

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A  + + V+++   + +F   ++              +Y F  IF+DPP +        +
Sbjct: 88  ALRYRDRVRVLVKDAAKFVSELK-------------PTYCFDLIFLDPPYALAPYVLCEI 134

Query: 312 VQA 314
           +  
Sbjct: 135 LAG 137


>gi|284031796|ref|YP_003381727.1| type 11 methyltransferase [Kribbella flavida DSM 17836]
 gi|283811089|gb|ADB32928.1| Methyltransferase type 11 [Kribbella flavida DSM 17836]
          Length = 222

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   + E V        G  L+  CG G  ++ LA H  +V AV+I+  ++  A  
Sbjct: 28  PNPYLARELGELV-------PGSALDAGCGTGAEAIWLAEHGWQVTAVDISAEALARAEE 80

Query: 250 NIAANHV 256
             A   +
Sbjct: 81  RSAPRGM 87


>gi|282898209|ref|ZP_06306200.1| Magnesium protoporphyrin O-methyltransferase [Raphidiopsis brookii
           D9]
 gi|281196740|gb|EFA71645.1| Magnesium protoporphyrin O-methyltransferase [Raphidiopsis brookii
           D9]
          Length = 227

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 16/133 (12%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI--AANH 255
           ++ W+       Q  + +  CG G+ S+ LA    +V A +I+   V  A+     +  +
Sbjct: 49  VITWLRDDQNLSQLTICDAGCGVGSLSIPLAVEGAKVYASDISAKMVAEAQDRAVISLKN 108

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             N        +  T               + H+     + +  P+   D+    +    
Sbjct: 109 TANPTFTVQDLESLTG--------------NYHTVICLDVLIHYPQEKADEMISHLCSLA 154

Query: 316 PHILYISCNPDSL 328
              + IS  P + 
Sbjct: 155 RSRVIISFAPKTF 167


>gi|332159341|ref|YP_004424620.1| hypothetical protein PNA2_1702 [Pyrococcus sp. NA2]
 gi|331034804|gb|AEC52616.1| hypothetical protein PNA2_1702 [Pyrococcus sp. NA2]
          Length = 384

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 17/109 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++ CG G   +  A+H  R + V+I    +E A+ N     V NV+ +   S      
Sbjct: 87  IADVSCGVGIQLIFFAKHGIRAIGVDIDPLKIEFAKRNAEKYGV-NVEFLVGDS------ 139

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQAYPHILY 320
                    L +  +       IF DP R   + +  +  +   P  +Y
Sbjct: 140 ---------LSEEIVEKIDADVIFSDPARPPNVPERNLEDLLPSPLKVY 179


>gi|307105490|gb|EFN53739.1| hypothetical protein CHLNCDRAFT_53519 [Chlorella variabilis]
          Length = 349

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAA 247
           +      +++           ++L++  G G  +L  AR      RV  V+++   +  A
Sbjct: 88  HPPQAARLVQLAALQPGE---EVLDVGTGTGLVALAAARLVGSSGRVTGVDLSDAMIHKA 144

Query: 248 RYNIAANHVNNVKIVRMSSKEFT------QAMRREREFNRLKDIDIHSYRFKTIF 296
                A  + N++++    +E         A+        L DI      +++  
Sbjct: 145 AVKARAQGLTNMRLLAADIEECAFGAGRFHAILCSNALPFLPDIPAALAEWRSWL 199


>gi|284045832|ref|YP_003396172.1| homocysteine S-methyltransferase [Conexibacter woesei DSM 14684]
 gi|283950053|gb|ADB52797.1| homocysteine S-methyltransferase [Conexibacter woesei DSM 14684]
          Length = 578

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN 258
           E++     G     L++ CG+G  ++ LAR+    V A++    +V+    N   N V  
Sbjct: 370 EYLDRERVGAHRRCLDVGCGSGLLAVQLARNGATHVHALDADPAAVKNTLTNAFRNGV-- 427

Query: 259 VKIVRMSSKEFTQAMRRER 277
              V   + +    +  ER
Sbjct: 428 ADRVTAHAADLYPWVPDER 446


>gi|163756357|ref|ZP_02163471.1| hypothetical protein KAOT1_01874 [Kordia algicida OT-1]
 gi|161323709|gb|EDP95044.1| hypothetical protein KAOT1_01874 [Kordia algicida OT-1]
          Length = 430

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 15/112 (13%)

Query: 210 QGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSK 267
              +L+++   G FS+  L      V +++I+ P++E A+ N   N  +    I+   + 
Sbjct: 258 NKTVLDVFSYAGGFSVHALVGGATEVTSLDISAPALEIAKSNAKLNEFSGKHNIIVGDA- 316

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                      F  L  +     +F  + +DPP            + +Y  +
Sbjct: 317 -----------FEELNHLAKAKQKFDIVVIDPPSFAKSATEVDRALASYKKL 357


>gi|146338710|ref|YP_001203758.1| Mg-protoporphyrin IX methyl transferase [Bradyrhizobium sp. ORS278]
 gi|146191516|emb|CAL75521.1| Mg-protoporphyrin IX methyl transferase [Bradyrhizobium sp. ORS278]
          Length = 233

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +L W+    +G    +L+  CG G+FS+  AR    V+AV+I+   +E A+  +  + 
Sbjct: 50  RTLLSWLPLDLRG--ARILDAGCGTGSFSIEAARRGADVVAVDISPTLIEIAQRRLPDDI 107

Query: 256 VNNV-KIVRMSSKE 268
             N  + V     +
Sbjct: 108 SRNAIRFVAGDMLD 121


>gi|146301677|ref|YP_001196268.1| trans-aconitate 2-methyltransferase [Flavobacterium johnsoniae
           UW101]
 gi|146156095|gb|ABQ06949.1| Trans-aconitate 2-methyltransferase [Flavobacterium johnsoniae
           UW101]
          Length = 255

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 26/156 (16%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHV 256
            +             ++L CG G  + +LA  F  V  L V+ +   +E +     A   
Sbjct: 20  YDLADLIKPVKNKKAIDLGCGTGEQTAILADKFKEVHFLGVDSSAEMLEKS----KALET 75

Query: 257 NNVKIVRMSSKEFTQAMRR----------------EREFNRLKDIDIHSYRFKTIFVDPP 300
            N+   R S++E  +   +                E  F +L  +     +F       P
Sbjct: 76  ENLHFRRASTEEMIENAEKWDLIFSNAALQWSNNHEILFPKLIHLLNSKGQFAVQMPMQP 135

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILS 336
            + L+   + +V   P   Y+        RD  +LS
Sbjct: 136 ENKLNKILIELVNEEPFKTYL----KGFKRDSPVLS 167


>gi|75763090|ref|ZP_00742871.1| Methyltransferase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218897075|ref|YP_002445486.1| hypothetical protein BCG9842_B3235 [Bacillus cereus G9842]
 gi|74489424|gb|EAO52859.1| Methyltransferase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218542587|gb|ACK94981.1| conserved hypothetical protein [Bacillus cereus G9842]
          Length = 237

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E ++      +  +L+L CG G+ +  L  H   V  ++ +   +E AR N       + 
Sbjct: 33  EQLVLQYAQPRSHILDLCCGTGHLTRKLLDHNFVVTGIDGSTQMIEYARKNA-----PDA 87

Query: 260 KIVRMSSKEF 269
             +   ++ F
Sbjct: 88  TFIVDDARYF 97


>gi|332213797|ref|XP_003256017.1| PREDICTED: trimethylguanosine synthase [Nomascus leucogenys]
          Length = 855

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 696 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 755

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            ++ +  F            + T      R+ +      + +    I
Sbjct: 756 CLKADVVF---LSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKI 799


>gi|313817969|gb|EFS55683.1| methyltransferase small domain protein [Propionibacterium acnes
           HL046PA2]
 gi|314960818|gb|EFT04919.1| methyltransferase small domain protein [Propionibacterium acnes
           HL002PA2]
 gi|315086880|gb|EFT58856.1| methyltransferase small domain protein [Propionibacterium acnes
           HL002PA3]
          Length = 206

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 20/112 (17%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  +  LAR      ++AV++   +++    N  A  V + ++  
Sbjct: 63  PPPSNGTFLDLGCGYGPIACALARACSGSHIVAVDVNDLAIDLTTRNAKALRVGD-RVHA 121

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
              +E    +R                 F  I+ +PP      A   ++  +
Sbjct: 122 CRPEEVDPDLR-----------------FDEIWSNPPIRVGKAALHDILTTW 156


>gi|307705718|ref|ZP_07642564.1| methyltransferase domain protein [Streptococcus mitis SK597]
 gi|307620732|gb|EFN99822.1| methyltransferase domain protein [Streptococcus mitis SK597]
          Length = 195

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 196 VHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
            +++   +     +    ++L+   G G  +L LA+    V  V+I++  +E AR     
Sbjct: 21  ANLVCQAVEKQIDLLSDKEILDFGGGTGLLTLPLAKQAKFVTLVDISEKMLEQARLKAEQ 80

Query: 254 NHVNNVKIVRMSSKE 268
             + N++ +     E
Sbjct: 81  QDIKNIQFLERDLLE 95


>gi|297682885|ref|XP_002819134.1| PREDICTED: trimethylguanosine synthase-like [Pongo abelii]
          Length = 853

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 694 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 753

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            ++ +  F            + T      R+ +      + +    I
Sbjct: 754 CLKADVVF---LSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKI 797


>gi|289773735|ref|ZP_06533113.1| methyltransferase [Streptomyces lividans TK24]
 gi|289703934|gb|EFD71363.1| methyltransferase [Streptomyces lividans TK24]
          Length = 264

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++ ++L A +     +L++ CG G F+L+LA     V+ V+ A  S++ AR        +
Sbjct: 43  LVPYLLMAGEFGARSVLDIGCGTGVFALLLADRGLEVVGVDPAGASLDVAR---GREGAD 99

Query: 258 NVKIVRMSSKEF 269
            V+ +   +   
Sbjct: 100 RVRWIEGDATSL 111


>gi|264678418|ref|YP_003278325.1| protein-L-isoaspartate(D-aspartate) [Comamonas testosteroni CNB-2]
 gi|299532266|ref|ZP_07045660.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Comamonas
           testosteroni S44]
 gi|262208931|gb|ACY33029.1| protein-L-isoaspartate(D-aspartate) [Comamonas testosteroni CNB-2]
 gi|298719928|gb|EFI60891.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Comamonas
           testosteroni S44]
          Length = 236

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             I   ML+ V          +LE+  G+G  + +LA     V+ +EI     E AR N+
Sbjct: 83  PKIEARMLQDV---KIKPTDRVLEIGTGSGYMAALLAAQAKEVVTLEIDPELAEMARENL 139

Query: 252 AANHVNNVKI 261
            +  V NV++
Sbjct: 140 LSAGVKNVEV 149


>gi|221128435|ref|XP_002154469.1| PREDICTED: similar to Trimethylguanosine synthase homolog [Hydra
           magnipapillata]
          Length = 1198

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A   + V+A++I    +E AR+N     V N +  +         
Sbjct: 731 IIDAFCGVGGNAIQFAYTCEHVIAIDINPTRLECARHNAVVYGVENRITFILGDFFLLAP 790

Query: 272 AMRREREF---NRLKDIDIHSYRFKTIFVDPPRSG 303
           +++ +  F          I    F    +  P SG
Sbjct: 791 SLKADVVFLSPPWGGPNYIAEDVFDIETMIKPVSG 825


>gi|218688764|ref|YP_002396976.1| putative metallothionein SmtA [Escherichia coli ED1a]
 gi|218426328|emb|CAR07153.1| putative AdoMet-dependent methyltransferase [Escherichia coli ED1a]
          Length = 261

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           N++ +  ++++    +           +D+  +     +V  PRS
Sbjct: 94  NMQFIHCAAQDVASHLE--------TPVDLILFHAVLEWVTDPRS 130


>gi|163750756|ref|ZP_02157991.1| hemK family protein [Shewanella benthica KT99]
 gi|161329451|gb|EDQ00445.1| hemK family protein [Shewanella benthica KT99]
          Length = 278

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEI 239
              N            ++E  L         +L+L  G G  +L LA  +   ++ AV+ 
Sbjct: 83  FMVNPTTLIPRPDTEILVETALNLPLAENAQVLDLGTGTGAIALSLAYEKKEWQITAVDK 142

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMS 265
              +V  A+ N     +  V+I++  
Sbjct: 143 IIEAVALAKANREHLKLQQVEIIQSD 168


>gi|114620166|ref|XP_001153796.1| PREDICTED: trimethylguanosine synthase isoform 1 [Pan troglodytes]
          Length = 855

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 696 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 755

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            ++ +  F            + T      R+ +      + +    I
Sbjct: 756 CLKADVVF---LSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKI 799


>gi|326569390|gb|EGE19450.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis BC8]
          Length = 310

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 11/102 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W LAA +     +++  CG+G   +  L     +VLAV+I   +V A R N A N V+
Sbjct: 153 LDW-LAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVD 211

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +              +  E +  R ++  +       I   P
Sbjct: 212 DR---------LLAFLPAEFDAYRTQNPQLADVITANILAKP 244


>gi|317122912|ref|YP_004102915.1| methyltransferase type 11 [Thermaerobacter marianensis DSM 12885]
 gi|315592892|gb|ADU52188.1| Methyltransferase type 11 [Thermaerobacter marianensis DSM 12885]
          Length = 285

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 6/97 (6%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD 232
               T  YR+               +   V A        LL++    G+ +L  A    
Sbjct: 42  FGQHTEAYRRSPG------HRAGADLYALVEALDPRPDQHLLDVATATGHTALTFAPRVA 95

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
               +++     EA     A   V N + V     + 
Sbjct: 96  EATGIDLTPAMGEAFAREAAERGVRNARFVVGDVHDL 132


>gi|303250477|ref|ZP_07336674.1| HemK-like protein [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307251518|ref|ZP_07533425.1| hypothetical protein appser6_420 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650465|gb|EFL80624.1| HemK-like protein [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860982|gb|EFM92988.1| hypothetical protein appser6_420 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 290

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 21/119 (17%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNI 251
              L+WV    +  Q   +L+L  G G  +L LA       +++ V+    +V  A  N 
Sbjct: 106 EVALDWVYKRLESQQTLQILDLGTGTGAIALALASELGDKAQIIGVDFKPEAVTLAETNR 165

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                 NV+ ++                       + + +F  I  +PP     D  + 
Sbjct: 166 QNLGFENVRFLQSD-----------------WFSALENRQFDLIVSNPPYIDKQDKNLQ 207


>gi|302537678|ref|ZP_07290020.1| predicted protein [Streptomyces sp. C]
 gi|302446573|gb|EFL18389.1| predicted protein [Streptomyces sp. C]
          Length = 348

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 185 NSFTQPNAGINVHMLEWVLAATK-----GIQGDLLELYCGNGNFSLVLARHF--DRVLAV 237
            SF QP    +  + EW+ A T         G + ++ CG G+ +L++A+ F    V   
Sbjct: 140 GSFFQP-TYEHRLVPEWLPALTGVTGKLAAGGTVADVGCGVGHTTLLIAKAFPQATVHGF 198

Query: 238 EIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
           + ++ +V  AR       + + V     S+ ++
Sbjct: 199 DYSEEAVSIARRLADEAGLSDRVVFEVASADDY 231


>gi|254564116|ref|YP_003071211.1| S-adenosyl-L-methionine-dependent methyltransferase
           [Methylobacterium extorquens DM4]
 gi|254271394|emb|CAX27407.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Methylobacterium extorquens DM4]
          Length = 259

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF--- 269
           +L+L CG G+ +  +A     V A+++++  ++A         + NV   + S +     
Sbjct: 48  VLDLGCGGGHVTYAVAPEVRSVTALDLSQSMLDAVAAEAKRRGLANVATRQASVEALPFA 107

Query: 270 ---TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                 +      +   D+         +     R GL D  
Sbjct: 108 DASFDGVLSRYSAHHWGDVPAALREAHRVLAPGGRFGLVDVV 149


>gi|163859173|ref|YP_001633471.1| ribosomal protein L11 methyltransferase [Bordetella petrii DSM
           12804]
 gi|163262901|emb|CAP45204.1| Ribosomal protein L11 methyltransferase [Bordetella petrii]
          Length = 276

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAA 253
             ML+    A  G Q  +++L  G+G  ++   R     R   V+I    +  AR N   
Sbjct: 49  AKMLD---MAYVGPQDTVIDLGSGDGRIAIAAVRDRKAARATGVDIDPERIAEARANAKH 105

Query: 254 NHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
             V + V+ V+ +  E   +         L D+++ 
Sbjct: 106 AGVQDRVRFVQQNLFETDISKATVLTMYLLPDVNLK 141


>gi|332971820|gb|EGK10767.1| ribosomal protein L11 methyltransferase [Psychrobacter sp.
           1501(2011)]
          Length = 307

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W+          +++  CG+G   +  L     +V +V+I   +V A + N   N V+
Sbjct: 148 LDWLTDQDL-SDKVVIDYGCGSGILGIAALLLGAKQVYSVDIDPQAVLATKQNAERNAVD 206

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           + ++     ++F  A +       +   DI +       +  P   L      +++   +
Sbjct: 207 H-QLQAYLPEDFAAAFKA----GEIPKADIIAAN----ILAKPLMELAPYLATLIKPKGN 257

Query: 318 IL 319
           I+
Sbjct: 258 IV 259


>gi|326664911|ref|XP_003197913.1| PREDICTED: trimethylguanosine synthase-like [Danio rerio]
          Length = 809

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+ ++I    +  A++N A   V   +  ++    +   
Sbjct: 647 IIDAFCGVGGNAIQFALTGKRVIGIDIDPVRLALAQHNAAVYGVEQRIDFLQGDFLQLAP 706

Query: 272 AMRREREF 279
            +R +  F
Sbjct: 707 HLRGDMVF 714


>gi|317121771|ref|YP_004101774.1| methyltransferase [Thermaerobacter marianensis DSM 12885]
 gi|315591751|gb|ADU51047.1| methyltransferase [Thermaerobacter marianensis DSM 12885]
          Length = 199

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 11/104 (10%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L+ G G+ ++  L+R     L VE  +  V     N+    +   +   +  ++ 
Sbjct: 43  ARVLDLFAGTGSLAIEALSRGAREALLVEADRRVVALLGRNLRELGLGPEQGAVVWRQDV 102

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMV 312
             A+ +  +  R          F  I  DPP R G+    V  +
Sbjct: 103 FAAIAKLADGRR---------VFDLILADPPYRQGVAPRVVQAL 137


>gi|311029039|ref|ZP_07707129.1| hypothetical protein Bm3-1_00509 [Bacillus sp. m3-13]
          Length = 96

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 20/103 (19%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             ++G +L++ CG G   L LA+ +    V  +++ + +VE A+ N + N V N+ +   
Sbjct: 9   PEVEGRILDVGCGYGPIGLSLAKFYPHRHVDMIDVNERAVELAKENGSINKVENITVFTS 68

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDD 306
              E                 ++ S  +  I  +PP R+G   
Sbjct: 69  DIYE-----------------NVTSTDYAAILSNPPIRAGKKS 94


>gi|301022415|ref|ZP_07186298.1| methyltransferase domain protein [Escherichia coli MS 196-1]
 gi|299881256|gb|EFI89467.1| methyltransferase domain protein [Escherichia coli MS 196-1]
          Length = 261

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|183982206|ref|YP_001850497.1| NodS-like (sam)-dependent methyltransferase [Mycobacterium marinum
           M]
 gi|183175532|gb|ACC40642.1| NodS-like (sam)-dependent methyltransferase [Mycobacterium marinum
           M]
          Length = 211

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
              A   + GD+L++ CG G+ ++ LA H   V  ++I+  ++  A        V +V  
Sbjct: 35  AWQAGGWVHGDVLDIGCGLGDNAIYLAAHGHPVTGLDISPTALITAARRADDAGV-HVTF 93

Query: 262 VRMSSKEF---TQAMRREREFNRLKDIDIHSYR-FKTIFVDPPRSGLDDATVGMVQAYP 316
               + +    T A     +      +D    R +        R G          A P
Sbjct: 94  AVADATKLDGYTDAFDTVIDSGMFHCLDDEGKRSYAAAVHRATRPGATLLMSCFCDANP 152


>gi|163750855|ref|ZP_02158089.1| hypothetical SAM-dependent methyltransferase [Shewanella benthica
           KT99]
 gi|161329413|gb|EDQ00408.1| hypothetical SAM-dependent methyltransferase [Shewanella benthica
           KT99]
          Length = 420

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 12/118 (10%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +AA       +L  +C  G F L  A+     +  V+++  +++ AR N++ N  N+  +
Sbjct: 238 MAARFVKDKSVLNCFCYTGTFGLYAAKAGAASIENVDVSARALQTARDNMSINGFNDDHV 297

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
             + + +  + +R  RE             F  I +DPP+   +     G  + Y  I
Sbjct: 298 NYLEA-DVFKLLRLYRE---------EGKTFDVIILDPPKFADNKSQLNGACRGYKDI 345


>gi|323490974|ref|ZP_08096168.1| hypothetical protein GPDM_16436 [Planococcus donghaensis MPA1U2]
 gi|323395330|gb|EGA88182.1| hypothetical protein GPDM_16436 [Planococcus donghaensis MPA1U2]
          Length = 245

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 16/115 (13%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVK 260
            A     +G +++L  GNG   L L AR   R++ VE+ +     AR +IA N +   ++
Sbjct: 37  FAYVPLKRGTIVDLCTGNGAIPLFLSARTESRIIGVELQERLAHMARRSIAYNELEKQIE 96

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           I+    K+  + +  E              ++  +  +PP     + +   +  +
Sbjct: 97  IIEGDVKDMPKQLGFE--------------KYDVVTCNPPYFPAHEMSDKNISEH 137


>gi|310779237|ref|YP_003967570.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ilyobacter polytropus DSM 2926]
 gi|309748560|gb|ADO83222.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ilyobacter polytropus DSM 2926]
          Length = 376

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 30/163 (18%)

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK----ICLDRDYVD 168
           ++++  +TL + R + +  ++                 +I RA   K    I  + ++  
Sbjct: 130 KTNRLTLTLDFTRKISEEEKKLIKE------------MIIKRARDKKPLQYILGEEEFFG 177

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVL 227
            +  V  R LI R                ++E  +     +    +L++  G+G  S+ L
Sbjct: 178 YKFKVDERVLIPRPE-----------TELLVEQCIVLMSDVKTPFILDIGVGSGAISVTL 226

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +     +VL V+I+  ++E A  N   N+V NVK ++    E
Sbjct: 227 GKKIPTSKVLGVDISDGALEVANQNKELNNVKNVKFIKSDVFE 269


>gi|326780236|ref|ZP_08239501.1| Methyltransferase type 11 [Streptomyces cf. griseus XylebKG-1]
 gi|326660569|gb|EGE45415.1| Methyltransferase type 11 [Streptomyces cf. griseus XylebKG-1]
          Length = 497

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            + +   G + D+L+L CG G+ SL+ A    RV AV+ +      AR           +
Sbjct: 33  RLESWLPGTRADVLDLGCGTGSLSLLAAGQGHRVTAVDRSPRMAHRAR--AKLAG-TGAE 89

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           ++   +        R     R+ D+ +  +    +++ P  +       G+++    ++ 
Sbjct: 90  VLVGDAA-------RPPVGERVFDVVVARH---VVWLLPDPAAALKHWFGLLKPGGRLVL 139

Query: 321 I 321
           +
Sbjct: 140 V 140


>gi|255626525|gb|ACU13607.1| unknown [Glycine max]
          Length = 169

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 24/136 (17%)

Query: 192 AGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARY 249
             I   ML     + + +   ++ +  CG G   +  A    + VL ++I   S+E A  
Sbjct: 30  PHIASRMLFTAENSFEDVSDKVVADFGCGCGTLGVAAALLSAEHVLGIDIDPESLEIASN 89

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLD 305
           N     V+ +  ++ +                  D+        T+ ++PP    + G D
Sbjct: 90  NAEELEVD-IDFIQSNV----------------MDLGWRGRIVDTVIMNPPFGTRKKGAD 132

Query: 306 DATVG-MVQAYPHILY 320
              +   ++     +Y
Sbjct: 133 LDFLSVALKVASQAVY 148


>gi|254000255|ref|YP_003052318.1| methyltransferase small [Methylovorus sp. SIP3-4]
 gi|253986934|gb|ACT51791.1| methyltransferase small [Methylovorus sp. SIP3-4]
          Length = 331

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 20/116 (17%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSV 244
           F  P+    V  ++      +      +++  G+G  ++ LA  F    V  V+I   ++
Sbjct: 128 FFGPDTYRFVRAVQQYAETRQPTVRRAVDIGTGSGVGAIALAGLFPDAEVFGVDINPHAL 187

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             AR N AAN    V+++                   L+D+   +  F  I  +PP
Sbjct: 188 ALARVNAAANGCERVQMLHSDL---------------LRDV---AGEFDLIIANPP 225


>gi|241759138|ref|ZP_04757246.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria flavescens
           SK114]
 gi|241320557|gb|EER56834.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria flavescens
           SK114]
          Length = 242

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  S  +A+   + V  +++A+ S++ A  +
Sbjct: 39  HDINPLRLDYIDGYAGLAGKRVLDVGCGGGILSESMAKRGAEHVTGIDMAEKSLQTAAAH 98

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A+ HV N+    +  ++         +     ++  H      I 
Sbjct: 99  AASQHVANIDYRCIRVEDLAAEQPHSFDVVTCMEMMEHVPDPSAIV 144


>gi|229134042|ref|ZP_04262862.1| Methyltransferase Atu1041 [Bacillus cereus BDRD-ST196]
 gi|228649377|gb|EEL05392.1| Methyltransferase Atu1041 [Bacillus cereus BDRD-ST196]
          Length = 247

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAAR 248
            N  I    ++ ++   KG    +L+L CG+G+FS     +    V+ V+I+K  +E A+
Sbjct: 25  ANDFIEQPAIKSLILCLKGKS--VLDLGCGDGHFSKYCIENGAKNVIGVDISKNMIERAK 82

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRR 275
                N  +N++ + +  ++   A ++
Sbjct: 83  ---KLNQDDNIEFMCLPMEDMGLANQK 106


>gi|254524753|ref|ZP_05136808.1| 3-demethylubiquinone-9 3-O-methyltransferase [Stenotrophomonas sp.
           SKA14]
 gi|219722344|gb|EED40869.1| 3-demethylubiquinone-9 3-O-methyltransferase [Stenotrophomonas sp.
           SKA14]
          Length = 238

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +N   L++V          +L++ CG G  S  LA+    V A+++A   V+ AR + 
Sbjct: 36  HALNPVRLKYVADRVPLRGARVLDIGCGGGLLSEALAQAGADVTAIDLAPELVKVARLHA 95

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
             +    V     ++++         +     ++  H      + 
Sbjct: 96  LESGAT-VDYRVQAAEDLAAEQPGSFDVVTCMEMLEHVPDPGAVI 139


>gi|195036812|ref|XP_001989862.1| GH18564 [Drosophila grimshawi]
 gi|193894058|gb|EDV92924.1| GH18564 [Drosophila grimshawi]
          Length = 438

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 21/126 (16%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +    S+               LA        +++ +CG G  ++  A+   RV+A++I 
Sbjct: 251 QLDPESWYSVTPEKVARQTARRLACDV-----IVDAFCGCGGNAIQFAKTCGRVIAIDID 305

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +  A++N     V + +  ++    +F  +                S R   +F+ P
Sbjct: 306 AGKLAMAKHNAGIYGVAHKIDFIQADFLQFASS---------------TSLRPDVVFLSP 350

Query: 300 PRSGLD 305
           P  G D
Sbjct: 351 PWGGPD 356


>gi|188534220|ref|YP_001908017.1| SAM-dependent methyltransferase [Erwinia tasmaniensis Et1/99]
 gi|224493212|sp|B2VDG5|RLMI_ERWT9 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|188029262|emb|CAO97139.1| SAM-dependent methyltransferase [Erwinia tasmaniensis Et1/99]
          Length = 396

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 12/118 (10%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                     +L  +   G F++  L  +   V++V+ ++ +++ AR N+  N ++ V  
Sbjct: 214 ATRRYAQGRRVLNCFSYTGGFAVSALMGNCKEVISVDTSQAALDVARQNVELNGLD-VSK 272

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
                 +  + +RR R+            +F  I +DPP+   +    +G  + Y  I
Sbjct: 273 AHFQRDDVFKLLRRYRD---------EGEKFDLIIMDPPKFVENKNQLMGACRGYKDI 321


>gi|183980930|ref|YP_001849221.1| methyltransferase [Mycobacterium marinum M]
 gi|183174256|gb|ACC39366.1| methyltransferase [Mycobacterium marinum M]
          Length = 229

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L     + G++L+  CG    +L LA     V+ ++++  +VE A    A   + N    
Sbjct: 40  LIEQGKVHGEVLDAGCGEAALALALAGRGHPVVGLDMSPTAVELAGREAARRGLTNASFA 99

Query: 263 RMSSKEFT 270
                +F 
Sbjct: 100 VADITDFA 107


>gi|30062455|ref|NP_836626.1| putative metallothionein SmtA [Shigella flexneri 2a str. 2457T]
 gi|56479771|ref|NP_706839.2| putative metallothionein SmtA [Shigella flexneri 2a str. 301]
 gi|30040701|gb|AAP16432.1| S-adenosylmethionine-dependent methyltransferase [Shigella flexneri
           2a str. 2457T]
 gi|56383322|gb|AAN42546.2| S-adenosylmethionine-dependentmethyltransferase [Shigella flexneri
           2a str. 301]
 gi|281600280|gb|ADA73264.1| S-adenosylmethionine-dependentmethyltransferase [Shigella flexneri
           2002017]
 gi|313650838|gb|EFS15239.1| protein smtA [Shigella flexneri 2a str. 2457T]
 gi|332759008|gb|EGJ89318.1| protein smtA [Shigella flexneri 4343-70]
 gi|332760082|gb|EGJ90380.1| protein smtA [Shigella flexneri 2747-71]
 gi|333006930|gb|EGK26425.1| protein smtA [Shigella flexneri K-218]
          Length = 261

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|15897324|ref|NP_341929.1| hypothetical protein SSO0392 [Sulfolobus solfataricus P2]
 gi|284173336|ref|ZP_06387305.1| hypothetical protein Ssol98_01585 [Sulfolobus solfataricus 98/2]
 gi|13813541|gb|AAK40719.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261601999|gb|ACX91602.1| methyltransferase small [Sulfolobus solfataricus 98/2]
          Length = 186

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 18/115 (15%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              G + ++ CG G   + LA      +V  V++   +++ A+ N   N V N  I+   
Sbjct: 44  AENGTVADVGCGYGPIGIYLALKNPNLKVYMVDVNYIAIKLAKKNAKLNGVENRTIIV-- 101

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
                    +   F+ +        +F  I+ +PP   G+D       +AY  ++
Sbjct: 102 ---------KSDIFDNIP----IDVKFTAIYSNPPLSKGVDFLKKLEAEAYDRLV 143


>gi|15902969|ref|NP_358519.1| HemK protein [Streptococcus pneumoniae R6]
 gi|116517180|ref|YP_816385.1| HemK protein [Streptococcus pneumoniae D39]
 gi|15458533|gb|AAK99729.1| HemK protein homolog; possible protoporphyrinogen oxidase
           [Streptococcus pneumoniae R6]
 gi|116077756|gb|ABJ55476.1| HemK protein [Streptococcus pneumoniae D39]
          Length = 279

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 32/153 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+    L V  R LI R                ++E +L      
Sbjct: 62  QLAAHKPAQYIIGQADFYGMHLKVDERVLIPRPE-----------TEELVELILTENLET 110

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A +I++ +++ AR N       N++I    S 
Sbjct: 111 NLSVLDIGTGSGAIALALAKNRPDWSVTAADISQEALDLARENAKN---QNLQIFLKKSD 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            FT+                 S ++  I  +PP
Sbjct: 168 CFTE----------------ISEKYDIIVSNPP 184


>gi|163940865|ref|YP_001645749.1| methyltransferase type 11 [Bacillus weihenstephanensis KBAB4]
 gi|163863062|gb|ABY44121.1| Methyltransferase type 11 [Bacillus weihenstephanensis KBAB4]
          Length = 249

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 6/87 (6%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAAR 248
            N  I    ++ ++   KG    +L+L CG+G+FS     +    V+ V+I+K  +E A+
Sbjct: 25  ANDFIEQPAIKSLILCLKGKS--VLDLGCGDGHFSKYCIENGAKNVIGVDISKNMIERAK 82

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRR 275
                N  +N++ + +  ++   A ++
Sbjct: 83  ---KLNQDDNIEFMCLPMEDMGLANQK 106


>gi|319786796|ref|YP_004146271.1| methyltransferase [Pseudoxanthomonas suwonensis 11-1]
 gi|317465308|gb|ADV27040.1| methyltransferase [Pseudoxanthomonas suwonensis 11-1]
          Length = 216

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 16/123 (13%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W++ A  G    +L+L+ G+G   L  L+R     + VE    +  A R N+A
Sbjct: 50  VRETLFNWLMPALPG--ARVLDLFAGSGALGLEALSRGAAEAVLVERDPGAATALRGNVA 107

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                  ++V   +           E   +   DI       +F+DPP  +GL D  +  
Sbjct: 108 RLGAP-ARVVEADA----LRWLGSAESASMPAADI-------VFIDPPFAAGLWDGVLQA 155

Query: 312 VQA 314
           + A
Sbjct: 156 LPA 158


>gi|314924515|gb|EFS88346.1| methyltransferase small domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314967274|gb|EFT11373.1| methyltransferase small domain protein [Propionibacterium acnes
           HL082PA2]
 gi|315094764|gb|EFT66740.1| methyltransferase small domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315102927|gb|EFT74903.1| methyltransferase small domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328612|gb|EGE70372.1| methyltransferase small domain protein [Propionibacterium acnes
           HL103PA1]
          Length = 362

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  +V++ R    AN 
Sbjct: 209 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAVDSTRLTAQANQ 268

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           +N V                         +D+       +  +PP     +     T+ M
Sbjct: 269 LNIVTHWCDGL------------------VDVPHESVDVVVTNPPFHRGTAQDHAPTLAM 310

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 311 LADAARVL 318


>gi|220919194|ref|YP_002494498.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957048|gb|ACL67432.1| NusB/RsmB/TIM44 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 455

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 17/121 (14%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSV 244
            Q        +         G    +L+     G  +  LA        V+A+E+     
Sbjct: 239 FQVQDEAAQLVTLLAAGDLAGRPARVLDACAAPGGKAFHLAELLGPGAEVVAIELHPRKA 298

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +      A   +  V++V   + +                  +    F  + VD P +GL
Sbjct: 299 DELAREAARRGLPAVRVVCADAGK--------------PIPGLEPGSFDAVLVDAPCAGL 344

Query: 305 D 305
            
Sbjct: 345 G 345


>gi|172059590|ref|YP_001807242.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           MC40-6]
 gi|226710056|sp|B1YSW5|PRMA_BURA4 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|171992107|gb|ACB63026.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           MC40-6]
          Length = 300

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LAR      V+ ++I   +VE+AR N   NH 
Sbjct: 156 MEWLEQSVKPGQS-VLDYGCGSGILAI-LARKCGANPVVGIDIDPQAVESARQNSERNHA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|116871639|ref|YP_848420.1| hypothetical protein lwe0219 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740517|emb|CAK19637.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 201

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 19/109 (17%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N ++N  I   S
Sbjct: 58  EKSGKILDVGCGYGPMGLTVAKEFPESQIEMVDVNLRALELAKENAELNKISNTHIYESS 117

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
             +                 ++ +  ++ I  +PP          +++ 
Sbjct: 118 VYD-----------------NVTATDYQAIISNPPIRAGKKVVHAILEG 149


>gi|254229646|ref|ZP_04923057.1| hypothetical protein VEx25_B0363 [Vibrio sp. Ex25]
 gi|262393815|ref|YP_003285669.1| methyltransferase [Vibrio sp. Ex25]
 gi|151937845|gb|EDN56692.1| hypothetical protein VEx25_B0363 [Vibrio sp. Ex25]
 gi|262337409|gb|ACY51204.1| methyltransferase [Vibrio sp. Ex25]
          Length = 251

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG+G  ++ ++   +  + ++I++  ++ A+    +   +N++ + + + +F+  
Sbjct: 42  VLDVCCGSGIVTIPVSEQLNEAIGIDISEGMLKHAKDKAKSR--SNLRFLHLDATQFSLG 99

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            + +          +    F+    D   +G   +    ++     ++
Sbjct: 100 KKFDLAI-------MTGNAFQAFLSDDMLAGALSSISKHLEKGGRFVF 140


>gi|186682008|ref|YP_001865204.1| Mg-protoporphyrin IX methyl transferase [Nostoc punctiforme PCC
           73102]
 gi|186464460|gb|ACC80261.1| magnesium protoporphyrin O-methyltransferase [Nostoc punctiforme
           PCC 73102]
          Length = 228

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 191 NAGINV--HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           N        +L W+ A     +  + +  CG G+ S+ LA    +V A +I++  VE  +
Sbjct: 40  NGHQQTVDTVLGWLKADNNLPELSICDAGCGVGSLSIPLAVDGAKVYATDISEKMVEEGK 99

Query: 249 YNIA--ANHVNNVKIVRMSSKEFT 270
                   +  N        +  +
Sbjct: 100 DRAKQTLGNDENPTFAVQDLESLS 123


>gi|298204756|emb|CBI25254.3| unnamed protein product [Vitis vinifera]
          Length = 310

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VK 260
           +  A +   G +++ + G G  ++  A+    V+A+++    VE A  N     V + + 
Sbjct: 138 IRHAERSGGGCVIDCFSGVGGNTIQFAKMCHHVVAIDLDPHKVELAFNNAKIYGVEDYID 197

Query: 261 IVRMSSKEFTQAMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            +     +   +++ +  F           +    ++ +  P+ G            P+I
Sbjct: 198 FIIGDFFQLASSLKGDVAFLAPPWGGPSYKTIPNFSLDLLKPKDG-YSIFQAAQAITPNI 256

Query: 319 L 319
           +
Sbjct: 257 I 257


>gi|242092256|ref|XP_002436618.1| hypothetical protein SORBIDRAFT_10g005915 [Sorghum bicolor]
 gi|241914841|gb|EER87985.1| hypothetical protein SORBIDRAFT_10g005915 [Sorghum bicolor]
          Length = 279

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 202 VLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
              A++   GD +++ + G G  S+  A     V+AVEI    VE A +N     V + +
Sbjct: 133 ASQASRAAPGDLVVDAFAGCGGNSIQFAARGCYVVAVEIDPRKVELAAHNARVYGVEDRI 192

Query: 260 KIVRMSSKEFTQAMRREREF 279
           + +          ++ +  F
Sbjct: 193 EFIVGDFFRLAPLLKADLVF 212


>gi|170054516|ref|XP_001863164.1| ybiN [Culex quinquefasciatus]
 gi|167874770|gb|EDS38153.1| ybiN [Culex quinquefasciatus]
          Length = 456

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 22/159 (13%)

Query: 158 TKICLDRDYVDERLTVAGR---TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DL 213
           T++ L RD+  E    AG+   TL  R         N  + +  +E  L   +       
Sbjct: 55  TRVLLRRDFGLEVDLPAGKLVPTLPLRL--------NYVLWLEDVEEALGWRRNRAEVRG 106

Query: 214 LELYCGNGNFSLVL--ARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           L++ CG      +L  AR+  R   + +E  + SVE+AR N+  N +          +  
Sbjct: 107 LDIGCGASCIYPLLGVARNRTRWKMVGLEKVRDSVESARGNVERNGLT------GDVRVV 160

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            Q    E       D D    RF     +PP    D   
Sbjct: 161 EQKEGEETVIRGFLDEDGVGERFDFCMCNPPFYEQDHEV 199


>gi|225443235|ref|XP_002271770.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 248

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VK 260
           +  A +   G +++ + G G  ++  A+    V+A+++    VE A  N     V + + 
Sbjct: 76  IRHAERSGGGCVIDCFSGVGGNTIQFAKMCHHVVAIDLDPHKVELAFNNAKIYGVEDYID 135

Query: 261 IVRMSSKEFTQAMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
            +     +   +++ +  F           +    ++ +  P+ G            P+I
Sbjct: 136 FIIGDFFQLASSLKGDVAFLAPPWGGPSYKTIPNFSLDLLKPKDG-YSIFQAAQAITPNI 194

Query: 319 L 319
           +
Sbjct: 195 I 195


>gi|28898403|ref|NP_798008.1| putative SAM-dependent methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28806620|dbj|BAC59892.1| putative SAM-dependent methyltransferase [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 418

 Score = 46.9 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 184 KEGLKETTGVLHGEEPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 231

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +            ++L  +   G F L  L     RV+  ++++P+++ A+YN
Sbjct: 232 RQQAMKYV---------KDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKYN 282

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 283 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTQFDVVIMDPPKFAESKAQLN 334

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 335 GACRGYKDI 343


>gi|330809816|ref|YP_004354278.1| hypothetical protein PSEBR_a2971 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377924|gb|AEA69274.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 315

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 98/275 (35%), Gaps = 29/275 (10%)

Query: 78  PGSLLINALMIEMMATIRLEPLLRAKLFQ--------IDYLTSQSDQAIVTLIYHRLLDD 129
              + +  L   ++  +   P    +LF         ++ +T    Q +V +   +  + 
Sbjct: 1   MNCVALQTLHAHLLTALESAPEETRRLFHGRGRCWPGLEQITVDWLQGVVLVSLFKEPEP 60

Query: 130 AWRECAIRLRDAL-------HARKYQIQLIGRA---NKTKICLDRDYVDERLTVAGRTLI 179
              +  I    AL       H++ + + +  R    + T+  +     +  LT     L 
Sbjct: 61  THLDDLIATLLALTASPAWQHSKAHTLAVQHRYLPQSLTQWLVGEPIDEWTLTEG--GLR 118

Query: 180 YRQIENSFTQPNAGIN--VHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLA 236
           YR       Q N       +  +WV A  +G    +L L+     FS+  +A     V+ 
Sbjct: 119 YRIDLGK-KQNNGLFLDMRYGRDWVRANAEG--KRVLNLFAYTCGFSVAAIAGGARHVVN 175

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN--RLKDIDIHSYRFKT 294
           +++++ ++   R N   N  +++  V     +  ++  +        L  ID  +++  +
Sbjct: 176 LDMSRAALSRGRDNHRLNG-HDLSQVSFLGHDLFKSWGKVINSGPYDLVIIDPPTFQKGS 234

Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
             +      +      ++ A+  +L  S +P +  
Sbjct: 235 FLLTKDYQRVLRRLPELLTAHGTVLACSNDPATGA 269


>gi|296271470|ref|YP_003654102.1| methyltransferase small [Thermobispora bispora DSM 43833]
 gi|296094257|gb|ADG90209.1| methyltransferase small [Thermobispora bispora DSM 43833]
          Length = 490

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 24/137 (17%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA T G  G  L+L  G+G   L LA     ++A ++   ++  AR   A + V  V   
Sbjct: 143 LAWTTGPVGRALDLGTGSGVQVLHLAGRASEIVATDVNPRALCLARLTWALSGVGEVDAR 202

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
           + S  +                  +   RF  I  +PP      A     ++        
Sbjct: 203 QGSMYD-----------------PVADERFDLIVANPPFVISPTARYAYRESGRQ----- 240

Query: 323 CNPDSLCRDLSILSTTH 339
              D  CRDL  L+  H
Sbjct: 241 --ADEFCRDLVRLAPRH 255


>gi|126738334|ref|ZP_01754055.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. SK209-2-6]
 gi|126720831|gb|EBA17536.1| ribosomal RNA small subunit methyltransferase B, putative
           [Roseobacter sp. SK209-2-6]
          Length = 432

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 21/167 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               +   +L A  G    +L+L    G  ++ +A    +VLAV+ +   +E  + N+  
Sbjct: 228 AAAALPAQMLDAKPGE--RVLDLCAAPGGKTMQMAEAGAQVLAVDTSASRMERLQENLTR 285

Query: 254 NHVNNVKIVRMSSKEFTQAMRRER---------EFNRLKDIDIHSYRFKTIFVDPPRSGL 304
             + N  ++   + E T                   R  D+           +   ++ +
Sbjct: 286 TGL-NADLIVGDALEQTGQYDAVLLDAPCSATGTIRRHPDLPHAKDGSGFGALIELQAQM 344

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP 351
                 +V+    ++Y +C         S+L      +     D FP
Sbjct: 345 LAHAWSLVKPGGRLVYCTC---------SLLPDEGECQVEEALDMFP 382


>gi|66792892|ref|NP_001019723.1| tRNA wybutosine-synthesizing protein 2 homolog [Bos taurus]
 gi|75057638|sp|Q58D65|TYW2_BOVIN RecName: Full=tRNA wybutosine-synthesizing protein 2 homolog;
           Short=tRNA-yW-synthesizing protein 2; AltName:
           Full=Alpha-amino-alpha-carboxypropyl transferase TYW2
 gi|61554565|gb|AAX46579.1| hypothetical protein FLJ20772 [Bos taurus]
          Length = 438

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/194 (17%), Positives = 63/194 (32%), Gaps = 15/194 (7%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    +   A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 99  CLEVSRWVEGRGVTWSAKLEAD--LPRSWQRHGDLLLLSEDCFQAKQWRHLEPELWETVA 156

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++            L  D+        G    +   +   SF      
Sbjct: 157 SALGAQRLAKRGRVSPDSTRTPAVSLLLGDHGWVEHVDNGIRYKFDVTQCMFSF------ 210

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L   +      V A E    +V A R N
Sbjct: 211 --GNITEKLRVASLPCVGEVLVDLYAGIGYFTLPFLVHAEAAFVHACEWNPHAVVALRNN 268

Query: 251 IAANHVNNVKIVRM 264
           +  N V +   +  
Sbjct: 269 LELNGVADRCQIHF 282


>gi|15800782|ref|NP_286796.1| putative metallothionein SmtA [Escherichia coli O157:H7 EDL933]
 gi|15830258|ref|NP_309031.1| metallothionein SmtA [Escherichia coli O157:H7 str. Sakai]
 gi|168751185|ref|ZP_02776207.1| SmtA protein [Escherichia coli O157:H7 str. EC4113]
 gi|168757014|ref|ZP_02782021.1| SmtA protein [Escherichia coli O157:H7 str. EC4401]
 gi|168762941|ref|ZP_02787948.1| SmtA protein [Escherichia coli O157:H7 str. EC4501]
 gi|168769917|ref|ZP_02794924.1| SmtA protein [Escherichia coli O157:H7 str. EC4486]
 gi|168776225|ref|ZP_02801232.1| SmtA protein [Escherichia coli O157:H7 str. EC4196]
 gi|168784119|ref|ZP_02809126.1| SmtA protein [Escherichia coli O157:H7 str. EC4076]
 gi|168787351|ref|ZP_02812358.1| SmtA protein [Escherichia coli O157:H7 str. EC869]
 gi|168801393|ref|ZP_02826400.1| SmtA protein [Escherichia coli O157:H7 str. EC508]
 gi|195940077|ref|ZP_03085459.1| putative metallothionein SmtA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806661|ref|ZP_03248998.1| SmtA protein [Escherichia coli O157:H7 str. EC4206]
 gi|208814814|ref|ZP_03255993.1| SmtA protein [Escherichia coli O157:H7 str. EC4045]
 gi|208822094|ref|ZP_03262413.1| SmtA protein [Escherichia coli O157:H7 str. EC4042]
 gi|209396225|ref|YP_002269593.1| SmtA protein [Escherichia coli O157:H7 str. EC4115]
 gi|217326178|ref|ZP_03442262.1| SmtA protein [Escherichia coli O157:H7 str. TW14588]
 gi|254792120|ref|YP_003076957.1| putative metallothionein SmtA [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227424|ref|ZP_05941705.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256153|ref|ZP_05948686.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291281922|ref|YP_003498740.1| SmtA protein [Escherichia coli O55:H7 str. CB9615]
 gi|12514093|gb|AAG55406.1|AE005282_1 S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           O157:H7 str. EDL933]
 gi|13360463|dbj|BAB34427.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187768362|gb|EDU32206.1| SmtA protein [Escherichia coli O157:H7 str. EC4196]
 gi|188014713|gb|EDU52835.1| SmtA protein [Escherichia coli O157:H7 str. EC4113]
 gi|188998650|gb|EDU67636.1| SmtA protein [Escherichia coli O157:H7 str. EC4076]
 gi|189355919|gb|EDU74338.1| SmtA protein [Escherichia coli O157:H7 str. EC4401]
 gi|189361115|gb|EDU79534.1| SmtA protein [Escherichia coli O157:H7 str. EC4486]
 gi|189366798|gb|EDU85214.1| SmtA protein [Escherichia coli O157:H7 str. EC4501]
 gi|189372670|gb|EDU91086.1| SmtA protein [Escherichia coli O157:H7 str. EC869]
 gi|189376431|gb|EDU94847.1| SmtA protein [Escherichia coli O157:H7 str. EC508]
 gi|208726462|gb|EDZ76063.1| SmtA protein [Escherichia coli O157:H7 str. EC4206]
 gi|208731462|gb|EDZ80150.1| SmtA protein [Escherichia coli O157:H7 str. EC4045]
 gi|208737579|gb|EDZ85262.1| SmtA protein [Escherichia coli O157:H7 str. EC4042]
 gi|209157625|gb|ACI35058.1| SmtA protein [Escherichia coli O157:H7 str. EC4115]
 gi|209774780|gb|ACI85702.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli]
 gi|209774782|gb|ACI85703.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli]
 gi|209774784|gb|ACI85704.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli]
 gi|209774786|gb|ACI85705.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli]
 gi|217322399|gb|EEC30823.1| SmtA protein [Escherichia coli O157:H7 str. TW14588]
 gi|254591520|gb|ACT70881.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290761795|gb|ADD55756.1| SmtA protein [Escherichia coli O55:H7 str. CB9615]
 gi|320192593|gb|EFW67234.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320637789|gb|EFX07581.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. G5101]
 gi|320653687|gb|EFX21761.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320659832|gb|EFX27388.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664301|gb|EFX31452.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326338184|gb|EGD62013.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           O157:H7 str. 1125]
 gi|326346161|gb|EGD69899.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           O157:H7 str. 1044]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|326693433|ref|ZP_08230438.1| ribosomal RNA small subunit methyltransferase C [Leuconostoc
           argentinum KCTC 3773]
          Length = 213

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 19/120 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAA 253
              ML+  L  T    G +L+L  G G   + +A+ + R V  V++ + ++  A+ N   
Sbjct: 54  TRTMLD-ALDKTTLTDGKVLDLGTGYGPVGVAIAKKYQRPVDMVDVNERALALAQQNAKQ 112

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N V+ +  V +   +  Q +               + ++  I  +PP     +    M+Q
Sbjct: 113 NGVDQL--VSVFQSDIYQQI---------------TDQYALILTNPPIRAGKEVVTAMLQ 155


>gi|323962913|gb|EGB58487.1| methyltransferase domain-containing protein [Escherichia coli H489]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|323359328|ref|YP_004225724.1| 16S RNA G1207 methylase RsmC [Microbacterium testaceum StLB037]
 gi|323275699|dbj|BAJ75844.1| 16S RNA G1207 methylase RsmC [Microbacterium testaceum StLB037]
          Length = 367

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICL------DRDYVDERLTVAGRTLIYRQIEN 185
           +   + + D L  R  ++ +     K+++ +        D   ER       L  R    
Sbjct: 144 KHMTVTMNDVLRERFDRVDVSHARQKSRVLIARGPHDGADPEPER--ARIDGLEIRSFGG 201

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPS 243
           +F   +  I   ML  +         + ++L CG G  +  LA      RVLA + +  +
Sbjct: 202 AFAGASLDIGTRML--LAHLPAPAGDEAIDLACGTGIVAATLATRHPSLRVLACDQSAIA 259

Query: 244 VEAARYNIAANH-VNNVKIVRMSS 266
           V +AR    AN   + V +VR   
Sbjct: 260 VASARATAEANGVADRVTVVRDDM 283


>gi|323190741|gb|EFZ76010.1| protein smtA [Escherichia coli RN587/1]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|323143361|ref|ZP_08078049.1| methyltransferase small domain protein [Succinatimonas hippei YIT
           12066]
 gi|322416879|gb|EFY07525.1| methyltransferase small domain protein [Succinatimonas hippei YIT
           12066]
          Length = 353

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 22/110 (20%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+L CG G   L LA+    V   +I+  ++  A  N   N +         S EF  
Sbjct: 217 KALDLGCGCGIIGLYLAKKGANVTFSDISAEALFLAELNAKENDLK-------ESCEFKA 269

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPR----SGLDDATVGMVQAYPH 317
           +   +            +  F  I  +PP        +  T+ M++  P+
Sbjct: 270 SFMLDD-----------APGFDVIATNPPFHEGIKKAEKVTLEMIKEAPN 308


>gi|307352675|ref|YP_003893726.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307155908|gb|ADN35288.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 279

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E+V       +  +L++  G G  ++ LA     V AVE +K   +      A   V+N+
Sbjct: 54  EFVDLLGPDKECSILDVGAGPGTLAVPLAELSGHVTAVEPSKGMADVMADYAAERGVSNL 113

Query: 260 KIVRMSSKEFTQAM 273
            IVR   ++    M
Sbjct: 114 DIVRKKWEDVDPGM 127


>gi|110804929|ref|YP_688449.1| putative metallothionein SmtA [Shigella flexneri 5 str. 8401]
 gi|110614477|gb|ABF03144.1| S-adenosylmethionine-dependentmethyltransferase [Shigella flexneri
           5 str. 8401]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|91228648|ref|ZP_01262564.1| putative SAM-dependent methyltransferase [Vibrio alginolyticus
           12G01]
 gi|91187799|gb|EAS74115.1| putative SAM-dependent methyltransferase [Vibrio alginolyticus
           12G01]
          Length = 397

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E    +   LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 163 KEGLKEITGVLHGEEPPQSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 210

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                   +  +   KG   ++L  +   G F L  L     RV+  ++++P+++ A++N
Sbjct: 211 -------RQQAMKYMKG--KEVLNCFSYTGGFGLYALKGDAKRVINADVSQPALDTAKFN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTQFDVVIMDPPKFAESKAQLN 313

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 314 GACRGYKDI 322


>gi|326444241|ref|ZP_08218975.1| hypothetical protein SclaA2_24384 [Streptomyces clavuligerus ATCC
           27064]
          Length = 227

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L+++ CGNG  +L LA  F  VL V+++  ++  AR   +   +  ++  ++ + + T 
Sbjct: 35  TLVDIGCGNGTQTLFLADRFPAVLGVDLSAAAIGLARRRESPAPLGTIEFRQLDAAD-TD 93

Query: 272 AMRRERE 278
            + R RE
Sbjct: 94  GIARLRE 100


>gi|312797064|ref|YP_004029986.1| protein-L-isoaspartate O-methyltransferase [Burkholderia
           rhizoxinica HKI 454]
 gi|312168839|emb|CBW75842.1| Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77)
           [Burkholderia rhizoxinica HKI 454]
          Length = 217

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             I   +L+ +      +   +LE+  G+G  + +LA     VL ++I     E AR N+
Sbjct: 63  PKIEARILQELAVKKHEV---VLEIGAGSGYMAALLAHRARSVLTLDIVPELAELARDNL 119

Query: 252 AANHVNNVKIVRMS 265
           AAN V N ++    
Sbjct: 120 AANDVTNAQVETGD 133


>gi|308174350|ref|YP_003921055.1| hypothetical protein BAMF_2459 [Bacillus amyloliquefaciens DSM 7]
 gi|307607214|emb|CBI43585.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
          Length = 245

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 200 EWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           EW   + A+   +G +L+L CG G  S+ LA     V  +++++  +  A+ 
Sbjct: 21  EWAGWIEASLPEKGRVLDLACGTGEISIRLAEKGCEVTGIDLSEDMLSCAQQ 72


>gi|317153067|ref|YP_004121115.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316943318|gb|ADU62369.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 284

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 20/110 (18%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLA--VEIAKPSVEAARYNI 251
             H++E VL A          +L  G+G  ++ LA  F       V+++ P++  AR N 
Sbjct: 97  TEHVIEAVLNAFSPDTPVRFADLGTGSGILAVTLAHCFPHATGLAVDLSGPALAVARRNA 156

Query: 252 AANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            A+ V + +  V+                       +   RF  I  +PP
Sbjct: 157 RAHGVHDRIAFVQGD----------------FTGPILGKGRFDLIVSNPP 190


>gi|260900777|ref|ZP_05909172.1| methyltransferase [Vibrio parahaemolyticus AQ4037]
 gi|308108012|gb|EFO45552.1| methyltransferase [Vibrio parahaemolyticus AQ4037]
          Length = 378

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 144 KEGLKETTGVLHGEEPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 191

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +            ++L  +   G F L  L     RV+  ++++P+++ A+YN
Sbjct: 192 RQQAMKYV---------KDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKYN 242

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 243 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTQFDVVIMDPPKFAESKAQLN 294

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 295 GACRGYKDI 303


>gi|227539650|ref|ZP_03969699.1| ribosomal protein L11 methyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227240563|gb|EEI90578.1| ribosomal protein L11 methyltransferase [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 279

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 25/169 (14%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIEN---SFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           +  D+ YV            Y  I +   SF   +      ML ++L      + ++L++
Sbjct: 91  VVDDQCYVRATFHEHKEQYPYEIIIDPKMSFGTGHHQTTSMMLSFILENDFEGK-EVLDM 149

Query: 217 YCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            CG G  +++ + R    V AV+     + +   N   N V+N++    S +        
Sbjct: 150 GCGTGILAILASFRGAKHVFAVDYDPICINSVEENKILNQVSNIESQVGSYE-------- 201

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI--LYIS 322
                      +    F TI  +  R+ L +       +      LYIS
Sbjct: 202 ----------VLEGRLFDTIVANINRNILLEQFEQYAASLKDKGELYIS 240


>gi|225706066|gb|ACO08879.1| methyltransferase Mb3374 [Osmerus mordax]
          Length = 263

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 191 NAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           +A I   + + VL      +G      ++L CG G  S +LA HF  V+ +++++  +E 
Sbjct: 11  HASIYQKVTDIVLNYLNQKKGKPHMLAVDLGCGTGQNSRLLAPHFKEVVGIDVSESQLEE 70

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           AR   A +   N+   + +++E                   H +      V+  R     
Sbjct: 71  AR---AVSGYPNITYRKGTAEELPFPDSSVDLLT--AASAAHWFDQARFLVEAARVLKPG 125

Query: 307 ATVGMVQAYPHI--LYISCN 324
             + ++         Y SC+
Sbjct: 126 GCMALLGYTDSFSLRYGSCD 145


>gi|188997340|ref|YP_001931591.1| ribosomal L11 methyltransferase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932407|gb|ACD67037.1| ribosomal L11 methyltransferase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 276

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 76/203 (37%), Gaps = 17/203 (8%)

Query: 69  ERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLD 128
           E   ++    G  ++N    E+   I  E     ++  +     +   A   ++   + +
Sbjct: 14  EVFLVELNGYGVEILNKNEKEVYFAIYSEDSTYEEIKSMINNIFEDLGAGKIVLEEDIKE 73

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + W E        +    + I         +I   +D +  RL +A   + +    +  T
Sbjct: 74  ENWEEVWKENFKPIEIPPFIILPEW-----EIYEGKDLIPIRLKIA---MAFGTGLHPST 125

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q        ML  ++         ++++ CG G  S+  A+    V A++I + +VE  +
Sbjct: 126 QI-------MLS-LIPKYVSQGDKVIDVGCGTGILSIAAAKFGAEVDAIDIEREAVEECK 177

Query: 249 YNIAANHVNNVKIVRMSSKEFTQ 271
            N   N V+ +   + S ++ ++
Sbjct: 178 INAWENGVS-INCWQGSIEDISK 199


>gi|182418400|ref|ZP_02949694.1| methyltransferase domain family [Clostridium butyricum 5521]
 gi|237666919|ref|ZP_04526904.1| methyltransferase family protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377782|gb|EDT75326.1| methyltransferase domain family [Clostridium butyricum 5521]
 gi|237658118|gb|EEP55673.1| methyltransferase family protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 262

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 33/58 (56%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +++EL CG+G F   L+   +R + ++ +  ++E A+  +  N++ N +    S+ +F
Sbjct: 57  NIIELGCGSGRFCKELSPFINRYVGIDYSPKAIELAKEMVIRNNIKNAEFKVASAIDF 114


>gi|116753743|ref|YP_842861.1| methyltransferase type 12 [Methanosaeta thermophila PT]
 gi|116665194|gb|ABK14221.1| Methyltransferase type 12 [Methanosaeta thermophila PT]
          Length = 275

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 13/121 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            V +        +L++  G G  ++ +AR    V A++ +   ++  + N+ A  ++N+ 
Sbjct: 50  QVASLKLQPHETVLDIGAGTGRLAIPMARMAKSVTALDRSGGMLKCLKANMQAEGISNIT 109

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            ++            E   + +   D+         VD     L  A   M Q     +Y
Sbjct: 110 CIQRD--------WEEIGVDEIPPHDVVLSSNSLGVVD-----LRTALAKMDQLAKRAVY 156

Query: 321 I 321
           I
Sbjct: 157 I 157


>gi|302829795|ref|XP_002946464.1| hypothetical protein VOLCADRAFT_56022 [Volvox carteri f.
           nagariensis]
 gi|300268210|gb|EFJ52391.1| hypothetical protein VOLCADRAFT_56022 [Volvox carteri f.
           nagariensis]
          Length = 251

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQA 272
           ++  CG G   + +A  F  V+ VEI+   VE AR+N +   V +  + +     +    
Sbjct: 70  MDACCGCGGNVIQMAGVFPVVIGVEISPKRVEMARHNSSVYDVAHKCQFLCADFFKVAPG 129

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           ++ +  F              T  V  P  G + + + ++
Sbjct: 130 LKVDALFMSPPWGGPKYQHVNTFDVFYPLVGFNKSLLRLL 169


>gi|240950072|ref|ZP_04754374.1| HemK-like protein/protein-glutamine N-methyl transferase
           [Actinobacillus minor NM305]
 gi|240295447|gb|EER46202.1| HemK-like protein/protein-glutamine N-methyl transferase
           [Actinobacillus minor NM305]
          Length = 289

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 21/116 (18%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNI 251
              LEW        +   +L+L  G G  +L LA    +   ++ ++    +VE A  N 
Sbjct: 106 EVALEWAYKRLNSQETLQILDLGTGTGAIALALASELGKKADIIGLDKQSEAVELAEKNR 165

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                 NV+ ++               F+ L      ++ F  I  +PP    DD 
Sbjct: 166 QKLGFKNVRFLQSD------------WFSVL-----ENHCFDLIVSNPPYIDKDDE 204


>gi|239983078|ref|ZP_04705602.1| methyltransferase type 12 [Streptomyces albus J1074]
          Length = 200

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 40/105 (38%), Gaps = 10/105 (9%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
               YR  +  F+      N  ++  V        G  L+L CG G  +  LARH  RV 
Sbjct: 6   WDEKYRSTDQLFS---GAPNAVLVAEVAEL---PPGHALDLGCGEGADAHWLARHGWRVT 59

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           AV+IA  ++  A              V  ++ + T+     R ++
Sbjct: 60  AVDIAPTALRRAAEAAPEL----ADQVTWTAADITRTPPAPRTYD 100


>gi|269837984|ref|YP_003320212.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269787247|gb|ACZ39390.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 265

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 199 LEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LE ++   +     + L++  G G+ +L LA H   V A ++    +E AR  I +  V 
Sbjct: 37  LERLVELAEATPETIALDIATGGGHTALALAPHVRHVTATDLVPEMLERARAFITSQGVI 96

Query: 258 NVKIVRMSSKEFTQA 272
           N       +++   A
Sbjct: 97  NADFQVADAEDLPFA 111


>gi|223039187|ref|ZP_03609477.1| flagellar basal-body rod protein [Campylobacter rectus RM3267]
 gi|222879548|gb|EEF14639.1| flagellar basal-body rod protein [Campylobacter rectus RM3267]
          Length = 239

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 1/112 (0%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FT   +     +   +           L ++ CG G  +L+LA     V  ++I+   ++
Sbjct: 15  FTGAPSEFQTRLYAKIAEFGVKFDAKSLADIGCGTGVHTLLLAGICREVTGMDISDEMLK 74

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
               + A   V+N+  V+   K F      +  F+ +         F+    
Sbjct: 75  IMLKDAAKFGVSNLTAVQSDFKNFNPNRVYDIAFSTMSPAISDEEDFEKFIN 126


>gi|221379831|ref|NP_732316.2| tat-like [Drosophila melanogaster]
 gi|220903121|gb|AAF55523.3| tat-like [Drosophila melanogaster]
          Length = 466

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 21/126 (16%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           R    S+               LA        +++ +CG G  ++  A    RV+AV+I 
Sbjct: 275 RLDRESWFSVTPEKIAKQTARRLACDV-----IVDAFCGCGGNAIQFANTCGRVIAVDID 329

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +  A++N     V + ++ +     +F  + +                R   +F+ P
Sbjct: 330 AEKLAMAKHNAGIYGVAHKIEFIHADFLQFAASTK---------------LRPNVVFLSP 374

Query: 300 PRSGLD 305
           P  G D
Sbjct: 375 PWGGPD 380


>gi|89895958|ref|YP_519445.1| hypothetical protein DSY3212 [Desulfitobacterium hafniense Y51]
 gi|89335406|dbj|BAE85001.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 270

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 37/91 (40%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           + +   +   +         DLL++  G+G +++  A H + V   +I+   +E AR N 
Sbjct: 40  SELVEKVTAILQERGLLAGADLLDIGGGSGRYAVPFAAHAEHVTITDISANMLELARRNA 99

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
               V N+   ++       A  + R+   L
Sbjct: 100 QEAGVTNLTYAKLEWTGADLAAWQWRKRFDL 130


>gi|317057237|ref|YP_004105704.1| 50S ribosomal protein L11 methyltransferase [Ruminococcus albus 7]
 gi|315449506|gb|ADU23070.1| ribosomal protein L11 methyltransferase [Ruminococcus albus 7]
          Length = 322

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 17/159 (10%)

Query: 169 ERLTVAGRTLIYRQIENSFT---QPNAGI-NVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           E +       I      S     Q N     + ++E       G    +L+L CG+G  S
Sbjct: 138 EPVPEGENRKILEIDPASSFGTGQHNTTQLCLELVEK----YLGDGDRVLDLGCGSGILS 193

Query: 225 L-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +  +        A++I   SV+ A  N   N +   +                 E     
Sbjct: 194 IGAVLLGAKECTAIDIDANSVKIAGENAEKNKIP-AEKYHAICGNVIDDPALVAEIGTGF 252

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
           D+   +     +       G+     G ++    ++ +S
Sbjct: 253 DMVCANIVADVLI------GMSGLFKGFLKKGGRLI-VS 284


>gi|300978420|ref|ZP_07174268.1| methyltransferase domain protein [Escherichia coli MS 45-1]
 gi|300409662|gb|EFJ93200.1| methyltransferase domain protein [Escherichia coli MS 45-1]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|240139009|ref|YP_002963484.1| hypothetical protein MexAM1_META1p2426 [Methylobacterium extorquens
           AM1]
 gi|240008981|gb|ACS40207.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 341

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV 256
           LE    A         ++ CG+G   +++A+      V+ V+I   ++ AAR N     V
Sbjct: 148 LEERTRAGHPAPRRAADIGCGSGAAGILVAKRLPEAEVVLVDINPAALRAARINARLAGV 207

Query: 257 NNVKIVRMSS 266
            NV+ V    
Sbjct: 208 GNVRPVHSDM 217


>gi|229489030|ref|ZP_04382896.1| methyltransferase type 12 [Rhodococcus erythropolis SK121]
 gi|229324534|gb|EEN90289.1| methyltransferase type 12 [Rhodococcus erythropolis SK121]
          Length = 198

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +   + A      G  L++ CG G  S+ LA+    V  V+  +  ++ AR +    H
Sbjct: 25  AQLSGLLDAIPLPEGGRALDIGCGTGRHSIELAQRGWHVTGVDAEQEPLDKARIHAREAH 84

Query: 256 VNNVKIVRMSSKEF 269
           V+ V+ +   + + 
Sbjct: 85  VD-VRFLHEDAADL 97


>gi|215486046|ref|YP_002328477.1| putative metallothionein SmtA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|227884114|ref|ZP_04001919.1| metallothionein SmtA [Escherichia coli 83972]
 gi|301047818|ref|ZP_07194870.1| methyltransferase domain protein [Escherichia coli MS 185-1]
 gi|312969013|ref|ZP_07783220.1| protein smtA [Escherichia coli 2362-75]
 gi|331682428|ref|ZP_08383047.1| protein SmtA [Escherichia coli H299]
 gi|215264118|emb|CAS08462.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|227838866|gb|EEJ49332.1| metallothionein SmtA [Escherichia coli 83972]
 gi|300300310|gb|EFJ56695.1| methyltransferase domain protein [Escherichia coli MS 185-1]
 gi|307552760|gb|ADN45535.1| S-adenosylmethionine-dependentmethyltransferase [Escherichia coli
           ABU 83972]
 gi|312286415|gb|EFR14328.1| protein smtA [Escherichia coli 2362-75]
 gi|315291219|gb|EFU50579.1| methyltransferase domain protein [Escherichia coli MS 153-1]
 gi|324009858|gb|EGB79077.1| methyltransferase domain protein [Escherichia coli MS 57-2]
 gi|330910701|gb|EGH39211.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           AA86]
 gi|331080059|gb|EGI51238.1| protein SmtA [Escherichia coli H299]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|171463263|ref|YP_001797376.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192801|gb|ACB43762.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 298

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/187 (20%), Positives = 71/187 (37%), Gaps = 17/187 (9%)

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           Q+    I  + LD +  E    L +A+ A + Q         T+I   +           
Sbjct: 37  QSEALWIVSKQLDLSPAEALDHLDEAITAVQQQTASTVA--DTRISTRKPLAYILGEAWL 94

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--R 233
             + +   E S   P + I   +++  L +     G  L+L  GNG+ +++LA       
Sbjct: 95  MGVPFFCSEQS-IVPRSWIAELIVDGSLESWLPADGKALDLCTGNGSLAILLALSCPDIH 153

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V A +I+ P++  A  N+  + +N    V +   +   A+ +  E N           F 
Sbjct: 154 VSACDISMPALSVAARNLDRHGLN--TQVELLDGDLWDALPKPNEDNL----------FN 201

Query: 294 TIFVDPP 300
            I  +PP
Sbjct: 202 LIICNPP 208


>gi|153837818|ref|ZP_01990485.1| methyltransferase domain family [Vibrio parahaemolyticus AQ3810]
 gi|149748839|gb|EDM59678.1| methyltransferase domain family [Vibrio parahaemolyticus AQ3810]
          Length = 251

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG+G  ++ ++   +  + ++I++  ++ A+    +   +N++ + + + +F+  
Sbjct: 42  VLDVCCGSGIVTIPVSEQLNEAIGIDISEGMLKHAKDKAKSR--SNLRFLHLDATQFSLG 99

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            + +          +    F+    D   +G   +    ++     ++
Sbjct: 100 KKFDLAI-------MTGNAFQAFLSDDMLAGALSSISKHLEKGGRFVF 140


>gi|145246190|ref|XP_001395344.1| ubiE/COQ5 methyltransferase [Aspergillus niger CBS 513.88]
 gi|134080057|emb|CAK41104.1| unnamed protein product [Aspergillus niger]
          Length = 270

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L      Q  +L++ CG G  ++ LA +     V  +E+    +  AR    +  ++N++
Sbjct: 31  LLPHLQPQMKILDIGCGPGTITVDLATYVPNGHVTGLEMVDDVLSGARQLAESRGIHNIE 90

Query: 261 IVRMSSKEFTQA 272
            V   +     A
Sbjct: 91  FVTGDANNLAYA 102


>gi|86160386|ref|YP_467171.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776897|gb|ABC83734.1| NusB/RsmB/TIM44 family protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 455

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 17/121 (14%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSV 244
            Q        +         G    +L+     G  +  LA        V+AVE+     
Sbjct: 239 FQVQDEAAQLVTLLAAGDLAGRPARVLDACAAPGGKAFHLAELLGPGAEVVAVELHPRKA 298

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +      A   +  V++V   + +                  +    F  + VD P +GL
Sbjct: 299 DELAREAARRGLPAVRVVCADAGK--------------PIPGLEPGSFDAVLVDAPCAGL 344

Query: 305 D 305
            
Sbjct: 345 G 345


>gi|78484558|ref|YP_390483.1| methyltransferase small [Thiomicrospira crunogena XCL-2]
 gi|78362844|gb|ABB40809.1| Conserved hypothetical protein with a methyltransferase domain
           [Thiomicrospira crunogena XCL-2]
          Length = 192

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 201 WVLAATKGIQG--DLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVN 257
           W+L     ++    +L++ CG G   L +A +    V  V+    +V+ A  N   N + 
Sbjct: 41  WLLLKHLELKPQETVLDIGCGYGPIGLTIAANTQGEVHMVDKDFVAVDYANKNAELNGLT 100

Query: 258 NVKIV 262
           + K  
Sbjct: 101 HAKAY 105


>gi|28898776|ref|NP_798381.1| hypothetical protein VP2002 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364150|ref|ZP_05776856.1| methyltransferase [Vibrio parahaemolyticus K5030]
 gi|260877233|ref|ZP_05889588.1| methyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|260897821|ref|ZP_05906317.1| methyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|28806994|dbj|BAC60265.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087613|gb|EFO37308.1| methyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|308090282|gb|EFO39977.1| methyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|308115215|gb|EFO52755.1| methyltransferase [Vibrio parahaemolyticus K5030]
          Length = 234

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG+G  ++ ++   +  + ++I++  ++ A+    +   +N++ + + + +F+  
Sbjct: 42  VLDVCCGSGIVTIPVSEQLNEAIGIDISEGMLKHAKDKAKSR--SNLRFLHLDATQFSLG 99

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            + +          +    F+    D   +G   +    ++     ++
Sbjct: 100 KKFDLAI-------MTGNAFQAFLSDDMLAGALSSISKHLEKGGRFVF 140


>gi|16128888|ref|NP_415441.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|74311478|ref|YP_309897.1| putative metallothionein SmtA [Shigella sonnei Ss046]
 gi|82544660|ref|YP_408607.1| metallothionein SmtA [Shigella boydii Sb227]
 gi|82777556|ref|YP_403905.1| putative metallothionein SmtA [Shigella dysenteriae Sd197]
 gi|89107771|ref|AP_001551.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           str. K-12 substr. W3110]
 gi|110641118|ref|YP_668848.1| putative metallothionein SmtA [Escherichia coli 536]
 gi|157157799|ref|YP_001462140.1| putative metallothionein SmtA [Escherichia coli E24377A]
 gi|157160442|ref|YP_001457760.1| putative metallothionein SmtA [Escherichia coli HS]
 gi|170020677|ref|YP_001725631.1| putative metallothionein SmtA [Escherichia coli ATCC 8739]
 gi|170080579|ref|YP_001729899.1| S-adenosyl-L-methionine-dependent methyltransferase [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170683604|ref|YP_001744249.1| putative metallothionein SmtA [Escherichia coli SMS-3-5]
 gi|187733711|ref|YP_001880882.1| putative metallothionein SmtA [Shigella boydii CDC 3083-94]
 gi|188492169|ref|ZP_02999439.1| SmtA protein [Escherichia coli 53638]
 gi|191172079|ref|ZP_03033623.1| SmtA protein [Escherichia coli F11]
 gi|193064682|ref|ZP_03045761.1| SmtA protein [Escherichia coli E22]
 gi|194428339|ref|ZP_03060880.1| SmtA protein [Escherichia coli B171]
 gi|194438752|ref|ZP_03070839.1| SmtA protein [Escherichia coli 101-1]
 gi|209918171|ref|YP_002292255.1| putative metallothionein SmtA [Escherichia coli SE11]
 gi|218694395|ref|YP_002402062.1| putative metallothionein SmtA [Escherichia coli 55989]
 gi|218700560|ref|YP_002408189.1| putative metallothionein SmtA [Escherichia coli IAI39]
 gi|218704349|ref|YP_002411868.1| putative metallothionein SmtA [Escherichia coli UMN026]
 gi|238900179|ref|YP_002925975.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli BW2952]
 gi|253774050|ref|YP_003036881.1| metallothionein SmtA [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161035|ref|YP_003044143.1| putative metallothionein SmtA [Escherichia coli B str. REL606]
 gi|256020951|ref|ZP_05434816.1| putative metallothionein SmtA [Shigella sp. D9]
 gi|256023378|ref|ZP_05437243.1| putative metallothionein SmtA [Escherichia sp. 4_1_40B]
 gi|260843170|ref|YP_003220948.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|260854212|ref|YP_003228103.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|260867093|ref|YP_003233495.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|297516353|ref|ZP_06934739.1| putative metallothionein SmtA [Escherichia coli OP50]
 gi|298380006|ref|ZP_06989611.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           FVEC1302]
 gi|300816975|ref|ZP_07097194.1| methyltransferase domain protein [Escherichia coli MS 107-1]
 gi|300901649|ref|ZP_07119709.1| methyltransferase domain protein [Escherichia coli MS 198-1]
 gi|300921041|ref|ZP_07137428.1| methyltransferase domain protein [Escherichia coli MS 115-1]
 gi|300925401|ref|ZP_07141286.1| methyltransferase domain protein [Escherichia coli MS 182-1]
 gi|300929616|ref|ZP_07145078.1| methyltransferase domain protein [Escherichia coli MS 187-1]
 gi|300937734|ref|ZP_07152535.1| methyltransferase domain protein [Escherichia coli MS 21-1]
 gi|300949716|ref|ZP_07163695.1| methyltransferase domain protein [Escherichia coli MS 116-1]
 gi|300955431|ref|ZP_07167805.1| methyltransferase domain protein [Escherichia coli MS 175-1]
 gi|300983092|ref|ZP_07176436.1| methyltransferase domain protein [Escherichia coli MS 200-1]
 gi|301023043|ref|ZP_07186852.1| methyltransferase domain protein [Escherichia coli MS 69-1]
 gi|301326635|ref|ZP_07219965.1| methyltransferase domain protein [Escherichia coli MS 78-1]
 gi|301643441|ref|ZP_07243489.1| methyltransferase domain protein [Escherichia coli MS 146-1]
 gi|306812626|ref|ZP_07446819.1| putative metallothionein SmtA [Escherichia coli NC101]
 gi|307137550|ref|ZP_07496906.1| putative metallothionein SmtA [Escherichia coli H736]
 gi|307311692|ref|ZP_07591332.1| Methyltransferase type 11 [Escherichia coli W]
 gi|309787792|ref|ZP_07682402.1| protein smtA [Shigella dysenteriae 1617]
 gi|331641447|ref|ZP_08342582.1| protein SmtA [Escherichia coli H736]
 gi|331672457|ref|ZP_08373247.1| protein SmtA [Escherichia coli TA280]
 gi|2507132|sp|P36566|SMTA_ECOLI RecName: Full=Protein smtA
 gi|1651445|dbj|BAA35667.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           str. K12 substr. W3110]
 gi|1787151|gb|AAC74007.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|73854955|gb|AAZ87662.1| S-adenosylmethionine-dependent methyltransferase [Shigella sonnei
           Ss046]
 gi|81241704|gb|ABB62414.1| S-adenosylmethionine-dependent methyltransferase [Shigella
           dysenteriae Sd197]
 gi|81246071|gb|ABB66779.1| S-adenosylmethionine-dependent methyltransferase [Shigella boydii
           Sb227]
 gi|110342710|gb|ABG68947.1| S-adenosylmethionine-dependent methltransferase [Escherichia coli
           536]
 gi|157066122|gb|ABV05377.1| SmtA protein [Escherichia coli HS]
 gi|157079829|gb|ABV19537.1| SmtA protein [Escherichia coli E24377A]
 gi|169755605|gb|ACA78304.1| Methyltransferase type 11 [Escherichia coli ATCC 8739]
 gi|169888414|gb|ACB02121.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|170521322|gb|ACB19500.1| SmtA protein [Escherichia coli SMS-3-5]
 gi|187430703|gb|ACD09977.1| SmtA protein [Shigella boydii CDC 3083-94]
 gi|188487368|gb|EDU62471.1| SmtA protein [Escherichia coli 53638]
 gi|190907606|gb|EDV67201.1| SmtA protein [Escherichia coli F11]
 gi|192927739|gb|EDV82354.1| SmtA protein [Escherichia coli E22]
 gi|194413554|gb|EDX29835.1| SmtA protein [Escherichia coli B171]
 gi|194422384|gb|EDX38384.1| SmtA protein [Escherichia coli 101-1]
 gi|209911430|dbj|BAG76504.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           SE11]
 gi|218351127|emb|CAU96831.1| putative AdoMet-dependent methyltransferase [Escherichia coli
           55989]
 gi|218370546|emb|CAR18353.1| putative AdoMet-dependent methyltransferase [Escherichia coli
           IAI39]
 gi|218431446|emb|CAR12324.1| putative AdoMet-dependent methyltransferase [Escherichia coli
           UMN026]
 gi|222032652|emb|CAP75391.1| Protein smtA [Escherichia coli LF82]
 gi|238863089|gb|ACR65087.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli BW2952]
 gi|242376736|emb|CAQ31449.1| predicted S-adenosylmethionine-dependent methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|253325094|gb|ACT29696.1| Methyltransferase type 11 [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972936|gb|ACT38607.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli B str. REL606]
 gi|253977150|gb|ACT42820.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli BL21(DE3)]
 gi|257752861|dbj|BAI24363.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O26:H11 str. 11368]
 gi|257758317|dbj|BAI29814.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O103:H2 str. 12009]
 gi|257763449|dbj|BAI34944.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O111:H- str. 11128]
 gi|260449933|gb|ACX40355.1| Methyltransferase type 11 [Escherichia coli DH1]
 gi|284920772|emb|CBG33835.1| putative S-adenosylmethionine-dependent methyltransferase
           [Escherichia coli 042]
 gi|298279704|gb|EFI21212.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           FVEC1302]
 gi|300306996|gb|EFJ61516.1| methyltransferase domain protein [Escherichia coli MS 200-1]
 gi|300317654|gb|EFJ67438.1| methyltransferase domain protein [Escherichia coli MS 175-1]
 gi|300354942|gb|EFJ70812.1| methyltransferase domain protein [Escherichia coli MS 198-1]
 gi|300397249|gb|EFJ80787.1| methyltransferase domain protein [Escherichia coli MS 69-1]
 gi|300412032|gb|EFJ95342.1| methyltransferase domain protein [Escherichia coli MS 115-1]
 gi|300418471|gb|EFK01782.1| methyltransferase domain protein [Escherichia coli MS 182-1]
 gi|300450897|gb|EFK14517.1| methyltransferase domain protein [Escherichia coli MS 116-1]
 gi|300457241|gb|EFK20734.1| methyltransferase domain protein [Escherichia coli MS 21-1]
 gi|300462453|gb|EFK25946.1| methyltransferase domain protein [Escherichia coli MS 187-1]
 gi|300530327|gb|EFK51389.1| methyltransferase domain protein [Escherichia coli MS 107-1]
 gi|300846680|gb|EFK74440.1| methyltransferase domain protein [Escherichia coli MS 78-1]
 gi|301078155|gb|EFK92961.1| methyltransferase domain protein [Escherichia coli MS 146-1]
 gi|305853389|gb|EFM53828.1| putative metallothionein SmtA [Escherichia coli NC101]
 gi|306908247|gb|EFN38746.1| Methyltransferase type 11 [Escherichia coli W]
 gi|308924191|gb|EFP69688.1| protein smtA [Shigella dysenteriae 1617]
 gi|309701197|emb|CBJ00497.1| putative S-adenosylmethionine-dependent methyltransferase
           [Escherichia coli ETEC H10407]
 gi|312945441|gb|ADR26268.1| putative metallothionein SmtA [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315060206|gb|ADT74533.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli W]
 gi|315135569|dbj|BAJ42728.1| S-adenosylmethionine-dependent methyl transferase [Escherichia coli
           DH1]
 gi|315296222|gb|EFU55529.1| methyltransferase domain protein [Escherichia coli MS 16-3]
 gi|320187457|gb|EFW62147.1| S-adenosylmethionine-dependent methyltransferase [Shigella flexneri
           CDC 796-83]
 gi|323157192|gb|EFZ43315.1| protein smtA [Escherichia coli EPECa14]
 gi|323379234|gb|ADX51502.1| Methyltransferase type 11 [Escherichia coli KO11]
 gi|323938027|gb|EGB34289.1| methyltransferase domain-containing protein [Escherichia coli
           E1520]
 gi|323942837|gb|EGB39002.1| methyltransferase domain-containing protein [Escherichia coli E482]
 gi|324012948|gb|EGB82167.1| methyltransferase domain protein [Escherichia coli MS 60-1]
 gi|324019070|gb|EGB88289.1| methyltransferase domain protein [Escherichia coli MS 117-3]
 gi|324117214|gb|EGC11122.1| methyltransferase domain-containing protein [Escherichia coli
           E1167]
 gi|331038245|gb|EGI10465.1| protein SmtA [Escherichia coli H736]
 gi|331070363|gb|EGI41728.1| protein SmtA [Escherichia coli TA280]
 gi|332342363|gb|AEE55697.1| S-adenosylmethionine-dependent methyltransferase SmtA [Escherichia
           coli UMNK88]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|332654338|ref|ZP_08420082.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
 gi|332517424|gb|EGJ47029.1| methyltransferase domain protein [Ruminococcaceae bacterium D16]
          Length = 359

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 92/275 (33%), Gaps = 48/275 (17%)

Query: 6   LIDQYE---QQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIM 62
             +QYE   +Q+   +   ++++   Q     +             F  W   +  ++  
Sbjct: 13  PEEQYEKLSEQVEAALQ--KKLLSLIQQGKDVVID-----------FSFWSKENRNFY-- 57

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
                KE ++                E++     + LL+ +L++ + + + +   ++T  
Sbjct: 58  -----KELIQ----------KAGAETELVYMKASKELLQKRLYKRNQVLNANSPFVITDE 102

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
                  A++E        +  ++  IQ     +K     + ++ D  +           
Sbjct: 103 ILEHHYHAFQEPCGEGEKVILQKEDIIQYSKEESKAIWNQNAEFWDCSMGDESNDFHREV 162

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP 242
                      +   +              +L++ CGNGN+S  LA     VLA + ++ 
Sbjct: 163 -------VRPKVTELL-------NPDPTDYILDIACGNGNYSAYLAEKAVSVLAFDYSEK 208

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            VE A+      + ++++     +   T  M  +R
Sbjct: 209 MVELAKKR-QKRYADHIEFCVADATNETSLMALKR 242


>gi|320173262|gb|EFW48471.1| S-adenosylmethionine-dependent methyltransferase [Shigella
           dysenteriae CDC 74-1112]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|301054412|ref|YP_003792623.1| methyltransferase [Bacillus anthracis CI]
 gi|300376581|gb|ADK05485.1| methyltransferase [Bacillus cereus biovar anthracis str. CI]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFKEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|297157198|gb|ADI06910.1| putative methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 281

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 16/88 (18%)

Query: 181 RQIENSFT-----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLV 226
                +F      Q   G+         ++ W + A +    ++  +++L  G+G  +L 
Sbjct: 69  HITGRAFFRYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPLIVDLCSGSGAIALA 128

Query: 227 LARHF--DRVLAVEIAKPSVEAARYNIA 252
           LA+     RV AVE+ + ++  AR N+ 
Sbjct: 129 LAQEVPRSRVHAVELDEGALRWARKNVE 156


>gi|296101375|ref|YP_003611521.1| methyltransferase type 11 [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295055834|gb|ADF60572.1| methyltransferase type 11 [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 257

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            Q  +L+L CG G+ S   A+H  +V A +++   +E       A  +NNV   +  ++ 
Sbjct: 45  PQATVLDLGCGAGHASFTAAQHVAQVTAYDLSSQMLEVVAEAAKAKGLNNVDTRQGYAES 104

Query: 269 F 269
            
Sbjct: 105 L 105


>gi|282852112|ref|ZP_06261470.1| ribosomal protein L11 methyltransferase [Lactobacillus gasseri
           224-1]
 gi|282556872|gb|EFB62476.1| ribosomal protein L11 methyltransferase [Lactobacillus gasseri
           224-1]
          Length = 226

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              ++   +         +L++  G+G  ++  ++     VL  +I+  +V AA+ NIA 
Sbjct: 74  TTQLVLLAMERALVKPMSVLDIGTGSGILAIAASKLGASHVLGTDISDEAVTAAKENIAL 133

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           N VNN+ + + +  +           N L DI + 
Sbjct: 134 NDVNNINVRKANLLKDIDDKYDLIVANILADILLE 168


>gi|260778543|ref|ZP_05887435.1| hypothetical protein VIC_003947 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604707|gb|EEX31002.1| hypothetical protein VIC_003947 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 397

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 204 AATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A       ++L  +   G F L  L     RV+  ++++P++++A+ N   N        
Sbjct: 214 AMKYVKGKEVLNCFSYTGGFGLYALKGDAKRVINADVSQPALDSAKLNAELNE------- 266

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
                +          F  L++      +F  + +DPP+     A + G  + Y  I
Sbjct: 267 -FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKFAESKAQLNGACRGYKDI 322


>gi|237809272|ref|YP_002893712.1| 50S ribosomal protein L11 methyltransferase [Tolumonas auensis DSM
           9187]
 gi|259534600|sp|C4LAF1|PRMA_TOLAT RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|237501533|gb|ACQ94126.1| ribosomal protein L11 methyltransferase [Tolumonas auensis DSM
           9187]
          Length = 292

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W+ +     +  L++  CG+G  ++  L    +RV+ ++I   ++EA+R N   N V+
Sbjct: 147 LQWLDSLDLKGK-TLVDFGCGSGILAIAALKLGAERVIGIDIDPQAIEASRDNAQRNGVS 205

Query: 258 N 258
           +
Sbjct: 206 D 206


>gi|154686821|ref|YP_001421982.1| YqeM [Bacillus amyloliquefaciens FZB42]
 gi|154352672|gb|ABS74751.1| YqeM [Bacillus amyloliquefaciens FZB42]
          Length = 245

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 200 EWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           EW   + A+   +G +L+L CG G  S+ LA     V  +++++  +  A+ 
Sbjct: 21  EWAGWIEASLPEKGRVLDLACGTGEISIRLAEKGCEVTGIDLSEDMLSCAQQ 72


>gi|149202060|ref|ZP_01879033.1| Mg-protoporphyrin IX methyl transferase [Roseovarius sp. TM1035]
 gi|149144158|gb|EDM32189.1| Mg-protoporphyrin IX methyl transferase [Roseovarius sp. TM1035]
          Length = 240

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 14/134 (10%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML  +    +G+   +L+  CG G  +  LA     V+AV+I+   ++ AR  +    
Sbjct: 61  AQMLARLPQDMRGL--RVLDAGCGAGQMTAELAARGAEVMAVDISPALIDVARRRLPEAL 118

Query: 256 VNNVKIVRMSS-----KEFTQAMR-------REREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              V              F   M         E +  R  D          +F   PR+ 
Sbjct: 119 APLVSFHAGDMLNPALGRFDHVMAMDSLIYYTESDLARALDALAARTTATVVFTVAPRTP 178

Query: 304 LDDATVGMVQAYPH 317
           L  A   M + +P 
Sbjct: 179 LLMAMWRMGKLFPR 192


>gi|159045610|ref|YP_001534404.1| type 11 methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157913370|gb|ABV94803.1| methyltransferase type 11 [Dinoroseobacter shibae DFL 12]
          Length = 256

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 31/126 (24%)

Query: 214 LELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L CG G  +L L  R       VE+       AR N + N +  ++++   + +    
Sbjct: 49  LDLGCGVGAAALCLMVRTGAACTGVELQPGYAALARANASRNDLP-LEVIEGDATDL--- 104

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDL 332
                        D+    F  +F +PP    +                S  P    RDL
Sbjct: 105 -----------PPDLRQRSFDHVFFNPPYFAAEA---------------STAPADAGRDL 138

Query: 333 SILSTT 338
           ++    
Sbjct: 139 ALRDRG 144


>gi|222055600|ref|YP_002537962.1| methyltransferase type 11 [Geobacter sp. FRC-32]
 gi|221564889|gb|ACM20861.1| Methyltransferase type 11 [Geobacter sp. FRC-32]
          Length = 260

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
                 +L+ ++ A +    +L L++ CG G  +   A    +   V++++  +  A   
Sbjct: 26  PMAEAGLLDLIIQAAEPRSDNLSLDIACGAGLLACRFAPLVSKATGVDLSRSMLAEAEKE 85

Query: 251 IAANHVNNVKIVRMSSKEF 269
                + N    +  S+  
Sbjct: 86  AQRQGLANTAFDQADSESL 104


>gi|1261828|dbj|BAA05456.1| S-adenosylmethionine-dependent methltransferase [Escherichia coli
           W3110]
 gi|1585880|prf||2202211A Met(S-adenosyl)-dependent methyltransferase
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|322499136|emb|CBZ34207.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 260

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
               M EWV + +   QG  +LEL CG G     +A+H  +V+  + +  S+     ++A
Sbjct: 87  AAYPMCEWVHSHSDMFQGKCVLELGCGAGVLGFTVAQHARQVVLTDCSPVSLALVLESVA 146

Query: 253 ANHVNNVKIVRM 264
            N   N  +  +
Sbjct: 147 RNGYRNCNVAVL 158


>gi|331244045|ref|XP_003334664.1| hypothetical protein PGTG_16523 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309313654|gb|EFP90245.1| hypothetical protein PGTG_16523 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 285

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 199 LEWVLAATKGIQGDL-LELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANH 255
           L   +       GDL ++L CG G  S  L R   FDRV+ V+ +KP +E A+       
Sbjct: 26  LYQAIMDYHQASGDLAIDLGCGTGIVSAELVRQGRFDRVVGVDPSKPMLEYAKK-----M 80

Query: 256 VNNVKIVRMSSKEF 269
           + N + V   ++  
Sbjct: 81  ITNAEFVHGRAESL 94


>gi|295690768|ref|YP_003594461.1| protein-(glutamine-N5) methyltransferase [Caulobacter segnis ATCC
           21756]
 gi|295432671|gb|ADG11843.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caulobacter segnis ATCC 21756]
          Length = 289

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 72/225 (32%), Gaps = 49/225 (21%)

Query: 123 YHRLLDDAWRECAIRLRDA---LHARKYQIQLIGRANKTKICLDRDY-----------VD 168
             + L  AW     RL+DA     +   ++ L   A  T+  +  D            +D
Sbjct: 1   MTQTLVKAWTAAKDRLKDAGIDQPSIDARLMLEVAAGVTRTEIVTDPYRELTAEQAAMLD 60

Query: 169 ERLTVAGR--TLIYRQIENSFT----QPNAGI------NVHMLEWVLAATKGIQG-DLLE 215
           E LT   R   + +      F     Q N  +         +++ VL A        +L+
Sbjct: 61  EFLTRRARREPVSHIIGRKGFWKILLQVNKNVLTPRPETEVIVDEVLKAFPEAMPFSMLD 120

Query: 216 LYCGNGNFSLV-LARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQA 272
           L  G+G   L  LA     + L V+ +  ++  AR N A   +NN    +          
Sbjct: 121 LGVGSGTILLAVLAERPAAKGLGVDASSEALAVARDNAANLDLNNRATFLHGD------- 173

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                         +    F  +  +PP   +  A +  ++    
Sbjct: 174 ----------WTAGLADASFDLVASNPPY--IPSAVIETLEPEVR 206


>gi|229826187|ref|ZP_04452256.1| hypothetical protein GCWU000182_01559 [Abiotrophia defectiva ATCC
           49176]
 gi|229789057|gb|EEP25171.1| hypothetical protein GCWU000182_01559 [Abiotrophia defectiva ATCC
           49176]
          Length = 283

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 19/124 (15%)

Query: 162 LDRDYVDERLTVAGR-----TLIYRQIENSF----TQPN-----AGINVHML-EWVLAAT 206
           +D D  +E L +  R      L Y      F     + N           +L E V+   
Sbjct: 54  IDNDKTEEFLRLIERRSERIPLSYVIGTRDFMGLTFKVNENVLIPEQETELLAEEVIKHC 113

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           KG    +L++  G+G  ++ ++   +   V A +I+  ++E A+ N    + + VK ++ 
Sbjct: 114 KGKT--VLDMCTGSGCIAISVSLLGEPSEVTASDISDKALEVAKENAEFLNASTVKFIKG 171

Query: 265 SSKE 268
              E
Sbjct: 172 DLFE 175


>gi|146086983|ref|XP_001465688.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134069788|emb|CAM68114.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
          Length = 260

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
               M EWV + +   QG  +LEL CG G     +A+H  +V+  + +  S+     ++A
Sbjct: 87  AAYPMCEWVHSHSDMFQGKCVLELGCGAGVLGFTVAQHARQVVLTDCSPVSLALVLESVA 146

Query: 253 ANHVNNVKIVRM 264
            N   N  +  +
Sbjct: 147 RNGYRNCNVAVL 158


>gi|229542299|ref|ZP_04431359.1| methyltransferase small [Bacillus coagulans 36D1]
 gi|229326719|gb|EEN92394.1| methyltransferase small [Bacillus coagulans 36D1]
          Length = 248

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 16/100 (16%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVK 260
            A     +G +L+L  GNG   L+L+      +  VEI +   + A+ ++A N + + ++
Sbjct: 39  FAWLPIQKGKVLDLCTGNGVIPLLLSNRTKAEITGVEIQERLSDMAKRSVAYNGLEDRIR 98

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I+    KE    +                 +F  +  +PP
Sbjct: 99  IIHGDLKEMPDVLGC--------------SKFDVVTCNPP 124


>gi|109893893|gb|ABG47032.1| methyltransferase [Actinomyces naeslundii]
          Length = 477

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 17/117 (14%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L+L CG G  +L L RH + V+A +I+  ++    +N A   V+ V     +  +  
Sbjct: 98  GTALDLGCGCGIQTLYLLRHAEHVVATDISARALAFTAFNAALAGVS-VTGAPGAGSDIA 156

Query: 271 QAMRREREFNRLKD----------------IDIHSYRFKTIFVDPPRSGLDDATVGM 311
            +   + E +   +                  +   RF  I  +PP      A    
Sbjct: 157 PSSGLDSEADAASESGSNAGHLELLRGSLLEPVAGRRFDLIASNPPFVLTPPAVREA 213


>gi|85858414|ref|YP_460616.1| ribosomal protein L11 methyltransferase [Syntrophus aciditrophicus
           SB]
 gi|85721505|gb|ABC76448.1| ribosomal protein L11 methyltransferase [Syntrophus aciditrophicus
           SB]
          Length = 319

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 12/138 (8%)

Query: 128 DDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
           D  W E   +    L   +  +        T   L  D V E                  
Sbjct: 107 DPDWGEQWKKYFKPLRVSRNIVIKPTWERYTP--LGSDIVIEIDPGMAFGTGQHAS---- 160

Query: 188 TQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVE 245
                 + + +LE ++   +  +  ++L++  G G   +  A+   +RVL V+I   + E
Sbjct: 161 ----TRMCLEVLEDLILTRRSPEPLNVLDVGTGTGILGIASAKLGAERVLCVDIDPKATE 216

Query: 246 AARYNIAANHVNNVKIVR 263
            A+ NIA NHV +   VR
Sbjct: 217 IAKENIAINHVEDRVSVR 234


>gi|52142621|ref|YP_084208.1| methyltransferase [Bacillus cereus E33L]
 gi|51976090|gb|AAU17640.1| methyltransferase [Bacillus cereus E33L]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFKEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|73669532|ref|YP_305547.1| methyltransferase [Methanosarcina barkeri str. Fusaro]
 gi|72396694|gb|AAZ70967.1| methyltransferase [Methanosarcina barkeri str. Fusaro]
          Length = 302

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 188 TQ-PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q  NA +     + +          +L++  G G  ++ +A+    V AVE ++  +  
Sbjct: 45  FQDNNARVITE--KRIKGMKLSSDSRVLDIGSGPGTLAIPIAQQVAHVTAVEPSEGMMNI 102

Query: 247 ARYNIAANHVNNVKIVRMSSKEF 269
              NI    + N+  V    +  
Sbjct: 103 MLENIKEYEIENIDCVHKDWEAV 125


>gi|332367422|gb|EGJ45155.1| rRNA methylase [Streptococcus sanguinis SK1059]
          Length = 183

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE     +A   +
Sbjct: 6   QMAHAFLAEVVTKEDTVVDATMGNGHDTLFLAQLAKQVYAFDIQEQAVEKTCQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +NV+++    +   Q
Sbjct: 66  DNVQLILAGHETLDQ 80


>gi|315605276|ref|ZP_07880322.1| transferase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313093|gb|EFU61164.1| transferase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 562

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 18/99 (18%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L++ CG G  +L LA H  RV+A +++  +    ++N A N             E T  +
Sbjct: 222 LDVGCGCGIQALYLATHASRVVATDLSARACALTQFNAALN-------------EATIDV 268

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           R    F       +    F  I  +PP     D+  G  
Sbjct: 269 REGSLFE-----PVEGETFDLIVTNPPFVITPDSVRGAA 302


>gi|307131018|ref|YP_003883034.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Dickeya dadantii 3937]
 gi|306528547|gb|ADM98477.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Dickeya dadantii 3937]
          Length = 256

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 189 QPNA-------GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q NA            ++E            +L+L CG G+ S  +A     V+A +++ 
Sbjct: 18  QANAYLSSAVHAQGEDLVELARRLKGKNHVSVLDLGCGAGHVSFTVASLVGNVVACDLSP 77

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             ++          + N++  +  ++    A
Sbjct: 78  RMLDVVASAAQEKGLTNIRTQQAMAESLPFA 108


>gi|300122756|emb|CBK23320.2| unnamed protein product [Blastocystis hominis]
          Length = 290

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           G  ++ + G G  ++ LAR   RV+++E+    +   ++N     V++ +  +   S + 
Sbjct: 122 GVAIDAFAGIGGNTIQLARTCRRVISIELNPQRLRMLQHNSKIYKVDHKIDCICGDSTKL 181

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV--QAYPHILYI 321
             +M+ +          +   + +   +     GLD A +  +  +   +++++
Sbjct: 182 LPSMKADVVVLAPPWGGVDYAKKEEFHLSDLPEGLDGAFLFRLARKVTRNVVFV 235


>gi|291571620|dbj|BAI93892.1| S-adenosylmethionine--Mg-protoporphyrin IX methyltransferase
           [Arthrospira platensis NIES-39]
          Length = 227

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA---RYNIAAN 254
           +LEW+ A        + +  CG G+ S+ L      V A +I++  V  A     N    
Sbjct: 47  VLEWLQADGNLGGLMVCDAGCGVGSLSIPLGDAGAIVSASDISEKMVAEANQRARNQLIT 106

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
             +N+  +    ++ T                 H+     + +  P++   +    +   
Sbjct: 107 RASNINFMAQDLEKLTGRY--------------HTVICLDVLIHYPQNQAAEMISHLCSL 152

Query: 315 YPHILYISCNPDSLCRDLSILST 337
               + +S  P +L   LSIL  
Sbjct: 153 AETRIILSFAPKTLA--LSILKK 173


>gi|284052239|ref|ZP_06382449.1| Mg-protoporphyrin IX methyl transferase [Arthrospira platensis str.
           Paraca]
          Length = 229

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 19/143 (13%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA---RYNIAAN 254
           +LEW+ A        + +  CG G+ S+ L      V A +I++  V  A     N    
Sbjct: 49  VLEWLQADGNLGGLMVCDAGCGVGSLSIPLGDAGAIVSASDISEKMVAEANQRARNQLIT 108

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
             +N+  +    ++ T                 H+     + +  P++   +    +   
Sbjct: 109 RASNINFMAQDLEKLTGRY--------------HTVICLDVLIHYPQNQAAEMISHLCSL 154

Query: 315 YPHILYISCNPDSLCRDLSILST 337
               + +S  P +L   LSIL  
Sbjct: 155 AETRIILSFAPKTLA--LSILKK 175


>gi|282854830|ref|ZP_06264164.1| methyltransferase small domain protein [Propionibacterium acnes
           J139]
 gi|282581976|gb|EFB87359.1| methyltransferase small domain protein [Propionibacterium acnes
           J139]
          Length = 334

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  +V++ R    AN 
Sbjct: 181 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAVDSTRLTAQANQ 240

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           +N V                         +D+       +  +PP     +     T+ M
Sbjct: 241 LNIVTHWCDGL------------------VDVPHESVDVVVTNPPFHRGTAQDHAPTLAM 282

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 283 LADAARVL 290


>gi|260574915|ref|ZP_05842917.1| magnesium protoporphyrin O-methyltransferase [Rhodobacter sp. SW2]
 gi|259022920|gb|EEW26214.1| magnesium protoporphyrin O-methyltransferase [Rhodobacter sp. SW2]
          Length = 222

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 2/71 (2%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML  +     G    +L+  CG G  +  LA     V AV+I+   ++ A+  +   H
Sbjct: 48  AVMLSRLPDDLTG--ARVLDAGCGTGLMTAELAARGADVTAVDISPALIDIAQSRLPDQH 105

Query: 256 VNNVKIVRMSS 266
           V  V+      
Sbjct: 106 VARVRFASGDM 116


>gi|256390628|ref|YP_003112192.1| methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
 gi|256356854|gb|ACU70351.1| Methyltransferase type 11 [Catenulispora acidiphila DSM 44928]
          Length = 233

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 190 PNAGINV-HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            NA I+   MLE +         D+L+  CG G ++  +A    RV A++ +   V  A 
Sbjct: 24  TNAYIDRPAMLELIGDV---AGRDVLDAGCGPGFYAAAMADRGARVTAIDGSAEMVRIAA 80

Query: 249 YNIAANHVNNVKIVRMSSK 267
                         R   +
Sbjct: 81  RAAGERG----TFARHDLE 95


>gi|229020547|ref|ZP_04177292.1| Protein hemK [Bacillus cereus AH1273]
 gi|229026768|ref|ZP_04183100.1| Protein hemK [Bacillus cereus AH1272]
 gi|228734491|gb|EEL85153.1| Protein hemK [Bacillus cereus AH1272]
 gi|228740767|gb|EEL91020.1| Protein hemK [Bacillus cereus AH1273]
          Length = 283

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  A  
Sbjct: 102 VLERIERHFGNEELHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKALG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|227327270|ref|ZP_03831294.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 310

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 8/147 (5%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMS 265
               +L+L  G+G  ++  A+ F    V AV+I+  ++     NI  + +   V  +R  
Sbjct: 132 TPSHILDLCTGSGCIAIACAQAFPEAEVDAVDISSEALAVTEQNIQQHGLEYRVTPIRSD 191

Query: 266 SKEFTQAMRREREFNRLKDIDIHS-YRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
                 A+R +        +D    +     F   P  GL       +     IL  +C 
Sbjct: 192 LFRDLPAIRYDLIVTNPPYVDEEDMFDLPQEFRFEPELGLAAG-NDGLDLVRRIL--ACA 248

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFP 351
           PD L  D  ++        + L DQ+P
Sbjct: 249 PDYLSDDGVLICEVGN-SMVHLIDQYP 274


>gi|219557201|ref|ZP_03536277.1| hypothetical protein MtubT1_07810 [Mycobacterium tuberculosis T17]
          Length = 267

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           TV+   ++       F          +L W  A +   +  +++   G+G  ++ LA+H 
Sbjct: 74  TVSFGPVVLHVGPGVF--VPRPETEAILAWATAQSLPARPLIVDACTGSGALAVALAQHR 131

Query: 232 ------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R++ ++ +  +++ AR N A      V++VR      T  +  E +      +
Sbjct: 132 ANLGLKARIIGIDDSDCALDYARRNAAG---TPVELVRADVT--TPCLLPELDGQVDLMV 186

Query: 286 DIHSYRFKTIFVDP 299
               Y      ++P
Sbjct: 187 SNPPYIPDAAVLEP 200


>gi|21226763|ref|NP_632685.1| arsenite S-adenosylmethyltransferase [Methanosarcina mazei Go1]
 gi|20905055|gb|AAM30357.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 249

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L  G G    + A+      +V+ V++    VE  + N      +NV+  +   +  
Sbjct: 77  VLDLGSGAGFDCFLAAQKVGNSGKVIGVDMTPEMVEKVQANARKYGYSNVEFRQGDIEAL 136


>gi|51091714|dbj|BAD36514.1| PRIP-interacting protein-like [Oryza sativa Japonica Group]
 gi|55773870|dbj|BAD72455.1| PRIP-interacting protein-like [Oryza sativa Japonica Group]
          Length = 305

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +L+ + G G  S+        V+AVEI    VE A +N     V++ ++ V         
Sbjct: 147 VLDAFAGVGGNSI----QGCYVVAVEIDPRKVELAAHNARIYGVDDMIEFVVADFFHLAP 202

Query: 272 AMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +++ +  F             +  ++ +  PR G         +  P+I+
Sbjct: 203 SLKADLVFLSPPWGGPSYSQAQVYSLDMLKPRDGF-TIFQAAQEISPNII 251


>gi|21221264|ref|NP_627043.1| methyltransferase [Streptomyces coelicolor A3(2)]
 gi|256787552|ref|ZP_05525983.1| methyltransferase [Streptomyces lividans TK24]
 gi|289771446|ref|ZP_06530824.1| methyltransferase [Streptomyces lividans TK24]
 gi|14799960|emb|CAC44277.1| putative methyltransferase [Streptomyces coelicolor A3(2)]
 gi|289701645|gb|EFD69074.1| methyltransferase [Streptomyces lividans TK24]
          Length = 285

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
            N G +  +L+   AA    +  +L+L CG+G  +   A       VL ++++ P +  A
Sbjct: 31  VNEGFDEPLLD---AAGITGEDRVLDLGCGSGQTTRRAALRAPRGHVLGLDLSGPMLAEA 87

Query: 248 RYNIAANHVNNVKIVRMSS 266
           R       V NV   +  +
Sbjct: 88  RSRAEREGVANVSFAQGDA 106


>gi|319639441|ref|ZP_07994191.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria mucosa C102]
 gi|317399336|gb|EFV80007.1| 3-demethylubiquinone-9 3-methyltransferase [Neisseria mucosa C102]
          Length = 237

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L+++          +L++ CG G  S  +A+   + V  +++A+ S++ A  +
Sbjct: 34  HDINPLRLDYIDGYAGLAGKRVLDVGCGGGILSESMAKRGAEHVTGIDMAEKSLQTAAAH 93

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            A+ HV N+    +  ++         +     ++  H      I 
Sbjct: 94  AASQHVANIDYRCIRVEDLAAEQPHSFDVVTCMEMMEHVPDPAAIV 139


>gi|315104022|gb|EFT75998.1| methyltransferase small domain protein [Propionibacterium acnes
           HL050PA2]
          Length = 206

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 20/112 (17%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  +  LAR      ++AV++   +++    N  A  V + ++  
Sbjct: 63  PPPSNGTFLDLGCGYGPIACALARACSGSHIVAVDVNDLAIDLTTRNAKALRVGD-RVHA 121

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
              +E    +R                 F  I+  PP      A   ++  +
Sbjct: 122 CRPEEVDPDLR-----------------FDEIWSTPPIRVGKAALHEILTTW 156


>gi|314988719|gb|EFT32810.1| methyltransferase small domain protein [Propionibacterium acnes
           HL005PA3]
          Length = 206

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 20/112 (17%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  +  LAR      ++AV++   +++    N  A  V + ++  
Sbjct: 63  PPPSNGTFLDLGCGYGPIACALARACSGSHIVAVDVNDLAIDLTTRNAKALRVGD-RVHA 121

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
              +E    +R                 F  I+  PP      A   ++  +
Sbjct: 122 CRPEEVDPDLR-----------------FDEIWSTPPIRVGKAALHEILTTW 156


>gi|239623795|ref|ZP_04666826.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521826|gb|EEQ61692.1| pantetheine-phosphate adenylyltransferase [Clostridiales bacterium
           1_7_47FAA]
          Length = 185

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 13/107 (12%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G   +  L+R  D  + +E    +V   R N+    +   +   + + +    
Sbjct: 46  LDLFSGSGAIGIEALSRGADLAVMIENNPQAVACIRENLGTTRLE--ERAVVMACDVLTG 103

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
           ++R         ++ H+YRF  +F+DPP   G ++  +G +   P +
Sbjct: 104 LKR---------LEGHNYRFDLVFMDPPYHHGYEEQVLGYLAHSPMV 141


>gi|224136780|ref|XP_002326943.1| predicted protein [Populus trichocarpa]
 gi|222835258|gb|EEE73693.1| predicted protein [Populus trichocarpa]
          Length = 215

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 41/113 (36%), Gaps = 5/113 (4%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
             +++ + G G  ++  A+ +  V+A++I    ++ A +N +   V + +  +       
Sbjct: 53  DTIIDCFTGVGGNAIQFAQRYKHVIAIDIDPKKIDYAFHNASIYGVSDQIDFIEGDFFAL 112

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTI---FVDPPRSGLDDATVGMVQAYPHIL 319
              ++ +  F           + KT     +  PR G         Q    I+
Sbjct: 113 ASKLKADSVFLSPPWGGPAYSKVKTYNIKTMLKPRDG-YSLFNTAKQIGHRII 164


>gi|297192642|ref|ZP_06910040.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723134|gb|EDY67042.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 424

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 17/91 (18%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L  G G  ++ LAR    VLAV+    + E AR N  A  ++ +  VR    + T  
Sbjct: 137 VADLCSGIGGDAIALARAGISVLAVDRDPLTAEVARANAEALGLSGLVEVR--CADVT-- 192

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                        DI +  +  +F DP R G
Sbjct: 193 -------------DIDTSPYDAVFADPARRG 210


>gi|156371558|ref|XP_001628830.1| predicted protein [Nematostella vectensis]
 gi|156215816|gb|EDO36767.1| predicted protein [Nematostella vectensis]
          Length = 398

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFT 270
           + +++ G G F++  A+    V A ++   S +A  +N   N   + +K   +  +EF 
Sbjct: 223 ICDMFAGVGPFAIPAAKKGCFVYANDLNPSSFKALEHNAKTNQVADRIKAFNLDGREFV 281


>gi|149922575|ref|ZP_01911005.1| Methyltransferase type 12 [Plesiocystis pacifica SIR-1]
 gi|149816602|gb|EDM76097.1| Methyltransferase type 12 [Plesiocystis pacifica SIR-1]
          Length = 217

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                 +LE+ CG G+ +L LA H  R+  ++I+   +  A   +    V N+     
Sbjct: 37  MKPADTILEVGCGTGSLALRLADHAARIHGIDISSEMIRIAEGKVEREGVTNLSFEVG 94


>gi|113866334|ref|YP_724823.1| putative acetylserotonin O-methyltransferase [Ralstonia eutropha
           H16]
 gi|113525110|emb|CAJ91455.1| putative acetylserotonin O-methyltransferase [Ralstonia eutropha
           H16]
          Length = 398

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++L  +C  G FSL  L      V +++ +  +++ A  N+  N     +   + +    
Sbjct: 224 EVLNCFCYTGGFSLAALRGGATSVTSIDSSGEALKIAAGNVTLNGFEPERATWLDA---- 279

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
                   F  L++      +F  I +DPP+       +    +AY  I
Sbjct: 280 ------DVFKTLREFRAEGRQFDLIVLDPPKFAPSAQHIDRAARAYKEI 322


>gi|66571188|gb|AAY51559.1| IP01327p [Drosophila melanogaster]
 gi|68051281|gb|AAY84904.1| LD22407p [Drosophila melanogaster]
 gi|220943348|gb|ACL84217.1| CG31241-PB [synthetic construct]
 gi|220953320|gb|ACL89203.1| CG31241-PB [synthetic construct]
          Length = 491

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 21/126 (16%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           R    S+               LA        +++ +CG G  ++  A    RV+AV+I 
Sbjct: 300 RLDRESWFSVTPEKIAKQTARRLACDV-----IVDAFCGCGGNAIQFANTCGRVIAVDID 354

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +  A++N     V + ++ +     +F  + +                R   +F+ P
Sbjct: 355 AEKLAMAKHNAGIYGVAHKIEFIHADFLQFAASTK---------------LRPNVVFLSP 399

Query: 300 PRSGLD 305
           P  G D
Sbjct: 400 PWGGPD 405


>gi|324326861|gb|ADY22121.1| methyltransferase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFKEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|310796666|gb|EFQ32127.1| methyltransferase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 308

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            ML           G  L+L CG+G  +  LA HF RV+AV+ +   V+ A  +     +
Sbjct: 27  KML-LAYHKPSSANGTALDLGCGHGVIARELAPHFGRVMAVDPSAGMVKQASESTRDPKI 85

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                 + S+++ +       +   +     H + +K  + +  R      T+       
Sbjct: 86  T---FRQGSAEDLSFVGDGTVDLA-IAGQSAHWFDYKRAWPELGRVVCGGGTLAFWGYKD 141

Query: 317 HIL 319
           +IL
Sbjct: 142 NIL 144


>gi|285017272|ref|YP_003374983.1| methyltransferase hemk protein [Xanthomonas albilineans GPE PC73]
 gi|283472490|emb|CBA14995.1| probable methyltransferase hemk protein [Xanthomonas albilineans]
          Length = 277

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 77/225 (34%), Gaps = 44/225 (19%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
           M     E LLRA   Q+         A V LI+    D AW       R+ L A    + 
Sbjct: 1   MNAPTPESLLRAACTQV-----ARGDAEVLLIHALQRDRAW--LFAHAREPLSAETVAVF 53

Query: 151 LIGRANKTK------ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
               A + +      +   R +    L V   TLI R                ++E  L 
Sbjct: 54  RGLVARRAQGEPVAYLTGRRGFWTLDLAVGPATLIPR-----------ADTERLVELALE 102

Query: 205 ATKGIQGD-LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                 G  + +L  G+G  +L LA  R   +VLA +++  ++  A  N+ A+ ++NV  
Sbjct: 103 RLDMQPGRRVADLGTGSGAIALALASERPRAQVLATDLSAAALAVAEANMLAHGLHNVAF 162

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              +                   + +   RF  I  +PP     D
Sbjct: 163 AHGA-----------------WLVPLAGQRFDLIASNPPYIAAGD 190


>gi|227522505|ref|ZP_03952554.1| methyltransferase [Lactobacillus hilgardii ATCC 8290]
 gi|227090327|gb|EEI25639.1| methyltransferase [Lactobacillus hilgardii ATCC 8290]
          Length = 202

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 21/121 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVL-AVEIAKPSVEAARYNIAA 253
             +LE V        G++L++  G G   L +A+   DRV+  V++ + ++  A  N  A
Sbjct: 49  RVLLENVDVENIP-DGNILDMGTGYGPIGLAIAKIQPDRVVDMVDVNEIALALAEKNAKA 107

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++NV+I   +S            ++ +KD       +  I  +PP          M+ 
Sbjct: 108 NGISNVRIFASNS------------YSNIKD------NYAAIVTNPPVRAGKKVVDDMIT 149

Query: 314 A 314
            
Sbjct: 150 G 150


>gi|226308045|ref|YP_002768005.1| methyltransferase [Rhodococcus erythropolis PR4]
 gi|226187162|dbj|BAH35266.1| putative methyltransferase [Rhodococcus erythropolis PR4]
          Length = 198

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             +   + A      G  L++ CG G  S+ LA+    V  V+  +  ++ AR +    H
Sbjct: 25  AQLSGLLDAIPLPEGGRALDIGCGTGRHSIELAQRGWHVTGVDAEQEPLDKARIHAREAH 84

Query: 256 VNNVKIVRMSSKEF 269
           V+ V+ +   + + 
Sbjct: 85  VD-VRFLHEDAADL 97


>gi|288549961|ref|ZP_05968778.2| methlytransferase, UbiE/COQ5 family [Enterobacter cancerogenus ATCC
           35316]
 gi|288316777|gb|EFC55715.1| methyltransferase, UbiE/COQ5 family [Enterobacter cancerogenus ATCC
           35316]
          Length = 283

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            Q  +L+L CG G+ S   A+   +V+A +++   +E       A  +NNV   +  ++ 
Sbjct: 71  PQAHVLDLGCGAGHASFTAAQKVAQVVAYDLSSQMLEVVAEAAKAKGLNNVATRQGYAES 130

Query: 269 F 269
            
Sbjct: 131 L 131


>gi|217977297|ref|YP_002361444.1| methyltransferase small [Methylocella silvestris BL2]
 gi|217502673|gb|ACK50082.1| methyltransferase small [Methylocella silvestris BL2]
          Length = 257

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 208 GIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              G +L++  G G  S+ LA  R   R+  VEI   + E AR N+  N +     V   
Sbjct: 45  DFSGLVLDIGAGVGAASIALAATRPGARIGLVEIDAEAAELARKNLDLNGIAQRGRV-FE 103

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +   +   RR           +       +  +PP
Sbjct: 104 ADALSPPSRRA--------AGLADETADLVISNPP 130


>gi|168703411|ref|ZP_02735688.1| hypothetical protein GobsU_28016 [Gemmata obscuriglobus UQM 2246]
          Length = 249

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                   G LL+L CG G   +  AR     + V++++  +  AR N A
Sbjct: 45  CERAFPAPGRLLDLGCGTGRLCVHFARKGFDCVGVDLSEEMLAKARANAA 94


>gi|118161371|gb|ABK64054.1| putative protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Janthinobacterium lividum]
          Length = 216

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 16/110 (14%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++LE+  G+G  + +LA     V +VEI       A   +AAN V NV +         Q
Sbjct: 80  NVLEIGTGSGYMAALLAHKARHVTSVEIVPQLKTLAEQTLAANGVTNVTVELGDG---AQ 136

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
              +                +  I V    + L +A +  V+    IL I
Sbjct: 137 GWSK-------------GAPYDVIVVSGALAVLPEALLQQVKVGGRILAI 173


>gi|49477893|ref|YP_036968.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228927937|ref|ZP_04090982.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229122432|ref|ZP_04251645.1| Methyltransferase type 11 [Bacillus cereus 95/8201]
 gi|49329449|gb|AAT60095.1| methyltransferase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228660993|gb|EEL16620.1| Methyltransferase type 11 [Bacillus cereus 95/8201]
 gi|228831627|gb|EEM77219.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFKEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|333006364|gb|EGK25872.1| protein smtA [Shigella flexneri VA-6]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|323976692|gb|EGB71780.1| methyltransferase domain-containing protein [Escherichia coli
           TW10509]
          Length = 234

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDRVLAEMGSQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|323967168|gb|EGB62592.1| methyltransferase domain-containing protein [Escherichia coli M863]
          Length = 234

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDRVLAEMGSQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|295115507|emb|CBL36354.1| hypothetical protein [butyrate-producing bacterium SM4/1]
          Length = 212

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 13/113 (11%)

Query: 2   SGTLLID-QYEQQLAEKVDRLRQMMLAF-QVPNL--------QIFRSEPIHYRMRAEFHI 51
            G L     YE+QL  K  ++R+++      P +         I       YR + EF  
Sbjct: 78  GGCLFQTFPYEEQLKIKEGQVRELLEGVLGTPGVSGTWNFEGIIGSPAAERYRNKMEFSF 137

Query: 52  WHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL 104
             +  D    +      +R R+   +    LI          +     L   L
Sbjct: 138 GDEVKDGPLAL---GMHKRGRLSQVLIPVKLIFQFFPFFSFPVIPSIFLLYLL 187


>gi|242279096|ref|YP_002991225.1| ribosomal L11 methyltransferase [Desulfovibrio salexigens DSM 2638]
 gi|242121990|gb|ACS79686.1| ribosomal L11 methyltransferase [Desulfovibrio salexigens DSM 2638]
          Length = 288

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 190 PNAGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           P   + + ++  +    K     +  +L  G+   ++ LA+   + + V+I   S+  A+
Sbjct: 127 PTTALCLELISKLADEGKLNANMEFFDLGTGSAILAIALAKLGLKGVGVDIDPQSIVCAQ 186

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            NI  N V+ + +   S+      ++ E     +    +       
Sbjct: 187 ENIDNNDVDGIILSVGSADSIDPKLKYELVVANILSGPLIELCPDV 232


>gi|212224547|ref|YP_002307783.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1]
 gi|212009504|gb|ACJ16886.1| SAM-dependent methyltransferase [Thermococcus onnurineus NA1]
          Length = 228

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
             LE +L      +G +L+L CG G FS +L      V+A++ ++  +E AR       +
Sbjct: 26  KTLEPLLLKHMTPRGKVLDLACGVGGFSFLLEDLGFDVVALDSSESMLEKARKFAKD-KM 84

Query: 257 NNVKIVRMSSKEF 269
           + V+ V+ +++  
Sbjct: 85  SRVEFVKGNAENL 97


>gi|190575195|ref|YP_001973040.1| 3-demethylubiquinone-9 3-methyltransferase [Stenotrophomonas
           maltophilia K279a]
 gi|190013117|emb|CAQ46749.1| putative 3-demethylubiquinone-9 3-methyltransferase
           [Stenotrophomonas maltophilia K279a]
          Length = 238

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +N   L++V          +L++ CG G  S  LA+    V A+++A   V+ AR + 
Sbjct: 36  HALNPVRLKYVADRVPLRGARVLDIGCGGGLLSEALAQAGADVTAIDLAPELVKVARLHA 95

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
             +    V     ++++         +     ++  H      I 
Sbjct: 96  LESGAK-VDYRVQAAEDLAAEQPGSFDVVTCMEMLEHVPDPGAII 139


>gi|89055149|ref|YP_510600.1| methyltransferase type 12 [Jannaschia sp. CCS1]
 gi|88864698|gb|ABD55575.1| Methyltransferase type 12 [Jannaschia sp. CCS1]
          Length = 121

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
            A       +LEL CG  + +L LA     V A +I+   VE  +  +A     N+ +V 
Sbjct: 34  RAHLRPTDRVLELGCGTASTALDLADDVAHVTASDISPAMVEIGQQKVAEAGAENITVVT 93

Query: 264 MSSKEFTQAMRRERE 278
             + +   A     +
Sbjct: 94  SIAGDTDLAQGAPYD 108


>gi|331651941|ref|ZP_08352960.1| protein SmtA [Escherichia coli M718]
 gi|331050219|gb|EGI22277.1| protein SmtA [Escherichia coli M718]
          Length = 265

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|325694523|gb|EGD36432.1| protein-(glutamine-N5) methyltransferase [Streptococcus sanguinis
           SK150]
          Length = 276

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 48/242 (19%)

Query: 83  INALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDAL 142
           +  L  E++        L      ++ L+        T    +L  +  +E   +L+   
Sbjct: 7   LAELEQELLVAGEEAESLSFVYRALNRLS-------FTDFVLKLRAEVNQEDHKQLKAI- 58

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
                Q  L+       I    D+    L V  R LI R                ++E +
Sbjct: 59  -----QEHLLAHKPAQYIIGSSDFHGLTLKVDERVLIPRPE-----------TEELVELI 102

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L+        +L++  G+G  +L LA  R   ++ A +++  ++  A  N  + +++ + 
Sbjct: 103 LSENPESSLSVLDIGTGSGAIALALANSRPNWQITASDLSDDALALAAENAQSCNLS-LT 161

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPH 317
            V+                     +D  S  F  I  +PP    +  D+  + ++ + PH
Sbjct: 162 FVQSDC------------------LDAISVNFDIIVSNPPYISEADKDEVGLNVLTSEPH 203

Query: 318 IL 319
           + 
Sbjct: 204 MA 205


>gi|293414201|ref|ZP_06656850.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           B185]
 gi|332282174|ref|ZP_08394587.1| smtA [Shigella sp. D9]
 gi|291434259|gb|EFF07232.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           B185]
 gi|332104526|gb|EGJ07872.1| smtA [Shigella sp. D9]
          Length = 265

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|289450726|ref|YP_003475098.1| 50S ribosomal protein L11 methyltransferase [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185273|gb|ADC91698.1| ribosomal protein L11 methyltransferase [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 347

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +LA        +L+L CG+G  ++  A+     + A++I   +V+  + NI  N+V   
Sbjct: 202 KLLAENMKPTDLILDLGCGSGILAIAAAKLGGKSITAIDIDPLAVKVCQDNIRLNNV--A 259

Query: 260 KIVRMSSKEFT 270
           + V  S+ E +
Sbjct: 260 EQVTASAGEIS 270


>gi|215430187|ref|ZP_03428106.1| hypothetical protein MtubE_05798 [Mycobacterium tuberculosis
           EAS054]
          Length = 289

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           TV+   ++       F          +L W  A +   +  +++   G+G  ++ LA+H 
Sbjct: 74  TVSFGPVVLHVGPGVF--VPRPETEAILAWATAQSLPARPLIVDACTGSGALAVALAQHR 131

Query: 232 ------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R++ ++ +  +++ AR N A      V++VR      T  +  E +      +
Sbjct: 132 ANLGLKARIIGIDDSDCALDYARRNAAG---TPVELVRADVT--TPCLLPELDGQVDLMV 186

Query: 286 DIHSYRFKTIFVDP 299
               Y      ++P
Sbjct: 187 SNPPYIPDAAVLEP 200


>gi|198432399|ref|XP_002124503.1| PREDICTED: similar to LOC564078 protein [Ciona intestinalis]
          Length = 456

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 18/196 (9%)

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN- 156
            +LRA L   +        + V  I H  L D        +   L  +    + +   + 
Sbjct: 141 DVLRAILPDSEMAA--RGFSQVGHILHVNLRDHQLPYKHIIGQVLLDKIQTARTVVNKHQ 198

Query: 157 ---------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
                    + ++    +    R+   GR   +      F   N+ ++       +    
Sbjct: 199 NIDNKFRNFEMEVIAGENNFVTRIIEHGRKFEFDFS-KVFW--NSRLSTE--HQRITNFV 253

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                + +++ G G F++ +A+    V A ++   S     +N+A N     K      +
Sbjct: 254 SESDVVFDVFAGVGPFAIPIAKKGCVVYANDLNPESYRWLLHNVALNKTK-AKCFNSDGR 312

Query: 268 EFTQAMRREREFNRLK 283
           EF Q   R     R  
Sbjct: 313 EFIQTELRNYLLTRSP 328


>gi|118619758|ref|YP_908090.1| hypothetical protein MUL_4684 [Mycobacterium ulcerans Agy99]
 gi|118571868|gb|ABL06619.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 253

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L++ CG+G  S+ +A+    VL V++ +  V  A  N+A         VR  + +  
Sbjct: 40  KRVLDVGCGHGALSIDIAQAGASVLGVDLDEGRVAFANRNLAQRFPEQADRVRFRAVDV- 98

Query: 271 QAMRREREFNRLKDIDIHSYRFKT 294
           +++  +  F+ +   D   +    
Sbjct: 99  RSLPVDEPFDVIVSKDTFEHVADV 122


>gi|118470561|ref|YP_888580.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118171848|gb|ABK72744.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
          Length = 518

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 10/131 (7%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N       LE V +      G  L+L CG G  ++ LA    RV AV+I+  ++  A  
Sbjct: 335 VNPQ-----LEKVASDLPA--GHALDLGCGEGGDAVWLAERGWRVTAVDISHTALSRAAA 387

Query: 250 NIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI--FVDPPRSGLDD 306
                   + +   R    E       +    +     +   R + +       R G   
Sbjct: 388 EAGRRGVADRITFERHDLSESFPDGEFDLVSAQFLHSTVRLERPRILSTAARAIRPGGHL 447

Query: 307 ATVGMVQAYPH 317
             V   +  P+
Sbjct: 448 VIVDHGKMPPN 458


>gi|26246948|ref|NP_752988.1| putative metallothionein SmtA [Escherichia coli CFT073]
 gi|331646186|ref|ZP_08347289.1| protein SmtA [Escherichia coli M605]
 gi|26107348|gb|AAN79531.1|AE016758_135 Protein smtA [Escherichia coli CFT073]
 gi|331044938|gb|EGI17065.1| protein SmtA [Escherichia coli M605]
          Length = 265

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|328474664|gb|EGF45469.1| methyltransferase [Vibrio parahaemolyticus 10329]
          Length = 251

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG+G  ++ ++   +  + ++I++  ++ A+    +   +N++ + + + +F+  
Sbjct: 42  VLDVCCGSGIVTIPVSEQLNEAIGIDISEGMLKHAKDKAKSR--SNLRFLHLDATQFSLG 99

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            + +          +    F+    D   +G   +    ++     ++
Sbjct: 100 KKFDLAI-------MTGNAFQAFLSDDMLAGALSSISKHLEKGGRFVF 140


>gi|241913349|pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase 1 (Tgs1) Bound To M7gtp And
           Adenosyl-Homocysteine (Active Form)
 gi|241913350|pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase 1 (Tgs1) Bound To M7gtp And
           Adenosyl-Homocysteine (Active Form)
 gi|241913351|pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase 1 (Tgs1) Bound To M7gtp And
           Adenosyl-Homocysteine (Active Form)
          Length = 241

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS---SKE 268
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 82  VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 141

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           F +A                +  F    +  P           +    +I+Y
Sbjct: 142 FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITN--NIVY 191


>gi|225016742|ref|ZP_03705934.1| hypothetical protein CLOSTMETH_00654 [Clostridium methylpentosum
           DSM 5476]
 gi|224950410|gb|EEG31619.1| hypothetical protein CLOSTMETH_00654 [Clostridium methylpentosum
           DSM 5476]
          Length = 306

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAA 253
              +    L         +L++ CG+G  S+  L       + V+I + +V+ A  N A 
Sbjct: 155 TTRLCMQFLEEYVTPSSTILDVGCGSGILSITGLLLGARHAVGVDIDELAVKVAGENAAL 214

Query: 254 NHVN--NVKIVRMSSKE 268
           N +     + +     E
Sbjct: 215 NRITEEQAEFLCGDLTE 231


>gi|189054471|dbj|BAG37244.1| unnamed protein product [Homo sapiens]
          Length = 853

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS---SKE 268
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 694 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 753

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           F +A                +  F    +  P           +    +I+Y
Sbjct: 754 FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITN--NIVY 803


>gi|218780347|ref|YP_002431665.1| methyltransferase type 11 [Desulfatibacillum alkenivorans AK-01]
 gi|218761731|gb|ACL04197.1| Methyltransferase type 11 [Desulfatibacillum alkenivorans AK-01]
          Length = 268

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           AA       +L+L CG G ++   AR     RV+ ++++ P +           ++NV  
Sbjct: 100 AANIANADSVLDLACGPGIYTRAFARTMGKGRVVGLDLSAPMLRWGAARAKKQGLDNVVY 159

Query: 262 VRMSSKEF 269
           VR S+ + 
Sbjct: 160 VRASALDL 167


>gi|151301096|ref|NP_079107.6| trimethylguanosine synthase [Homo sapiens]
 gi|317373500|sp|Q96RS0|TGS1_HUMAN RecName: Full=Trimethylguanosine synthase; AltName:
           Full=CLL-associated antigen KW-2; AltName:
           Full=Cap-specific guanine-N2 methyltransferase; AltName:
           Full=Hepatocellular carcinoma-associated antigen 137;
           AltName: Full=Nuclear receptor coactivator 6-interacting
           protein; AltName: Full=PRIP-interacting protein with
           methyltransferase motif; Short=PIMT; Short=PIPMT
 gi|182887849|gb|AAI60105.1| Trimethylguanosine synthase homolog (S. cerevisiae) [synthetic
           construct]
          Length = 853

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS---SKE 268
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 694 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 753

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           F +A                +  F    +  P           +    +I+Y
Sbjct: 754 FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITN--NIVY 803


>gi|124267423|ref|YP_001021427.1| 3-demethylubiquinone-9 3-methyltransferase [Methylibium
           petroleiphilum PM1]
 gi|124260198|gb|ABM95192.1| 3-demethylubiquinone-9 3-methyltransferase [Methylibium
           petroleiphilum PM1]
          Length = 253

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   LEW+     G+QG  +L++ CG G  S  +AR    VL ++++  +++ A+ +
Sbjct: 50  HQINPLRLEWLAKLAGGLQGKRVLDVGCGGGILSDAMARQGAEVLGIDLSSKALKVAQLH 109

Query: 251 I 251
            
Sbjct: 110 A 110


>gi|15077008|gb|AAK83025.1|AF286340_1 hepatocellular carcinoma-associated antigen 137 [Homo sapiens]
          Length = 853

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS---SKE 268
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 694 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 753

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           F +A                +  F    +  P           +    +I+Y
Sbjct: 754 FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITN--NIVY 803


>gi|14278850|gb|AAK27730.1| PRIP-interacting protein PIPMT [Homo sapiens]
          Length = 852

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS---SKE 268
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 693 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 752

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           F +A                +  F    +  P           +    +I+Y
Sbjct: 753 FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITN--NIVY 802


>gi|46852026|gb|AAT02709.1| hypothetical rhabdomyosarcoma antigen MU-RMS-40.15 [Homo sapiens]
          Length = 578

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS---SKE 268
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 419 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 478

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           F +A                +  F    +  P           +    +I+Y
Sbjct: 479 FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITN--NIVY 528


>gi|119607168|gb|EAW86762.1| nuclear receptor coactivator 6 interacting protein, isoform CRA_b
           [Homo sapiens]
          Length = 853

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS---SKE 268
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 694 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 753

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           F +A                +  F    +  P           +    +I+Y
Sbjct: 754 FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRLSKKITN--NIVY 803


>gi|150019695|ref|YP_001311949.1| methyltransferase small [Clostridium beijerinckii NCIMB 8052]
 gi|149906160|gb|ABR36993.1| methyltransferase small [Clostridium beijerinckii NCIMB 8052]
          Length = 249

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 33/160 (20%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVN-NVKI 261
           A    +  +++L  G G    ++   +   RV  +EI +  V+ A+ ++  N +  NV  
Sbjct: 44  AYIKNKHKVMDLCTGTGIIPFLIYGKYKPERVYGLEIQEDMVDMAKRSVKLNELEGNVCF 103

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPH 317
           +    K            + LK +D    +F  + V+PP    +   +     +  A   
Sbjct: 104 INEDLKNI----------DYLKTLD----KFDAVTVNPPYKLNNSGIINPNDKLAIARHE 149

Query: 318 ILYISCNPD---SLCR----DLSILSTTHTIERLALFDQF 350
           IL   CN +   S  R    D   L   H  ERLA  D F
Sbjct: 150 IL---CNLEDVISAARILLKDNGRLFMIHRPERLA--DIF 184


>gi|325001085|ref|ZP_08122197.1| hypothetical protein PseP1_20087 [Pseudonocardia sp. P1]
          Length = 229

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            + G +L++ CG G ++  LA     V A++ +KP +E     IA   ++NV  V     
Sbjct: 48  PLDGHVLDMACGTGYWTAQLASRASTVTALDGSKPMLEQ----IAHRGLSNVNTVHADLF 103

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
            +      +  F       +   RF   + 
Sbjct: 104 NWNPPTEWDAVFFAHWLAHVPEDRFDRFWS 133


>gi|297852270|ref|XP_002894016.1| WW domain-containing protein [Arabidopsis lyrata subsp. lyrata]
 gi|297339858|gb|EFH70275.1| WW domain-containing protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
           +G +++ + G G  ++  A     V+A+++    ++ A++N A   V + +  V+    +
Sbjct: 388 EGIVIDCFTGVGGNAIQFASRRHYVIAIDLDPKKIDLAQHNAAIYGVADKIDFVKGDFFD 447

Query: 269 FTQAMRREREF--NRLKDID-IHSYRFKTIFVDPPRSG 303
               ++    F        D +    +    +  PR G
Sbjct: 448 LAHDLKAGTVFLSPPWGGPDYLKVSTYDMKTMLRPRDG 485


>gi|289423905|ref|ZP_06425698.1| ribosomal protein L11 methyltransferase [Peptostreptococcus
           anaerobius 653-L]
 gi|289155682|gb|EFD04354.1| ribosomal protein L11 methyltransferase [Peptostreptococcus
           anaerobius 653-L]
          Length = 314

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN-NVK 260
           L         + ++ CG+G   +  A+     V+ ++I + +V+ A+ NI  NHV  N+ 
Sbjct: 171 LEKYVKEDSVVFDIGCGSGILGICAAKLGAKEVIGIDIDEVAVKVAKENIDKNHVGSNMT 230

Query: 261 IVRMSSKE 268
            ++ +  +
Sbjct: 231 AIKGNLAD 238


>gi|284007354|emb|CBA72731.1| protein methyltransferase (protein-glutamine N-methyltransferase)
           [Arsenophonus nasoniae]
          Length = 256

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 198 MLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254
           ++E  L      +   +L+L  G G  +L LA      +++ V+I+  ++  A+ N    
Sbjct: 71  LVERALQLLSDKRAVKILDLGTGTGAVALALASECPQAQIVGVDISDAAITLAQLNADNL 130

Query: 255 HVNNVKI 261
            +NNVK 
Sbjct: 131 LINNVKF 137


>gi|260901550|ref|ZP_05909945.1| methyltransferase [Vibrio parahaemolyticus AQ4037]
 gi|308110923|gb|EFO48463.1| methyltransferase [Vibrio parahaemolyticus AQ4037]
          Length = 251

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG+G  ++ ++   +  + ++I++  ++ A+    +   +N++ + + + +F+  
Sbjct: 42  VLDVCCGSGIVTIPVSEQLNEAIGIDISEGMLKHAKDKAKSR--SNLRFLHLDATQFSLG 99

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            + +          +    F+    D   +G   +    ++     ++
Sbjct: 100 KKFDLAI-------MTGNAFQAFLSDDMLAGALSSISKHLEKGGRFVF 140


>gi|254787289|ref|YP_003074718.1| RNA methyltransferase [Teredinibacter turnerae T7901]
 gi|237685081|gb|ACR12345.1| putative RNA methyltransferase [Teredinibacter turnerae T7901]
          Length = 399

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 13/110 (11%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+++   G F +  LA     V   + +  +++ A+ N       + +   +    F
Sbjct: 224 KRVLDVFSYVGAFGVQALAWGAKDVWCADASARALDIAQKNAQLQGGGD-RFTALEGDAF 282

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHI 318
                       LK +  +  RF  + VDPP        +    QAY  I
Sbjct: 283 AS----------LKALKENDERFDVVIVDPPAFIKRKKDLAAGTQAYRRI 322


>gi|237730194|ref|ZP_04560675.1| methyltransferase type 11 [Citrobacter sp. 30_2]
 gi|226905733|gb|EEH91651.1| methyltransferase type 11 [Citrobacter sp. 30_2]
          Length = 256

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 189 QPNAGINVH-------MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q NA +          +L      +   Q  +L++ CG G+ S V A+H  +V+A +++ 
Sbjct: 17  QANAYLTSAVHASGRDLLRLGERLSAFPQARVLDMGCGAGHASFVAAQHVKQVVAYDLSS 76

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +E          + NV   +  ++  
Sbjct: 77  QMLEVVAEAAKDRGLENVATRQGYAESL 104


>gi|196032007|ref|ZP_03099421.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus W]
 gi|218904009|ref|YP_002451843.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus AH820]
 gi|228915486|ref|ZP_04079075.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228934157|ref|ZP_04096996.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946498|ref|ZP_04108814.1| Methyltransferase type 11 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|195994758|gb|EDX58712.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus W]
 gi|218539882|gb|ACK92280.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus AH820]
 gi|228813176|gb|EEM59481.1| Methyltransferase type 11 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228825325|gb|EEM71119.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228844133|gb|EEM89193.1| Methyltransferase type 11 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFKEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|149191501|ref|ZP_01869750.1| N6-adenine-specific methylase [Vibrio shilonii AK1]
 gi|148834689|gb|EDL51677.1| N6-adenine-specific methylase [Vibrio shilonii AK1]
          Length = 214

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 22/120 (18%)

Query: 209 IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
               +L+L+ G+G+      +R   +V  +E+   + +    N+A    +N+     ++ 
Sbjct: 74  PHAKVLDLFAGSGSLGFEAASRQAAQVTMIELNDKAYQQIISNVALVKADNIVTHHGNAL 133

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ-----AYPHILYI 321
            F                D        +F+DPP R GL    +  ++     A   ++YI
Sbjct: 134 SFL---------------DQPGQPHDVVFIDPPFRQGLLPEVIQKLEDNGWLADNALIYI 178


>gi|297598200|ref|NP_001045219.2| Os01g0920300 [Oryza sativa Japonica Group]
 gi|57899423|dbj|BAD88361.1| unknown protein [Oryza sativa Japonica Group]
 gi|57899853|dbj|BAD87637.1| unknown protein [Oryza sativa Japonica Group]
 gi|255674005|dbj|BAF07133.2| Os01g0920300 [Oryza sativa Japonica Group]
          Length = 176

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 318 ILYISCNPDSLCRDLSIL--STTHTIERLALFDQFPYTRHMECGVLLVRK 365
           ++YISC  DS  +D   L  S    ++    F+ FP T  +E   +  R+
Sbjct: 110 LIYISCGWDSFKKDCKSLMSSKAWHLQNAHAFNFFPGTDSIEVLAIFKRE 159


>gi|15921717|ref|NP_377386.1| hypothetical protein ST1428 [Sulfolobus tokodaii str. 7]
 gi|15622504|dbj|BAB66495.1| 164aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 164

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYN 250
            +   MLE   A   G +  + +L CG+G   +  A+  +  + + +EI    ++ A  N
Sbjct: 18  KVVRRMLEIANA---GPEDIVYDLGCGDGRIIITAAKDFNVKKAVGIEINDERIKEALEN 74

Query: 251 IAANHVNNVKIV 262
           I  N V N  IV
Sbjct: 75  IKRNGVENKAIV 86


>gi|113971502|ref|YP_735295.1| HemK family modification methylase [Shewanella sp. MR-4]
 gi|113886186|gb|ABI40238.1| modification methylase, HemK family [Shewanella sp. MR-4]
          Length = 286

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 19/108 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   ++ AV+  + +V  A+ N  
Sbjct: 100 TEILVETALNLPLESNAKVLDLGTGTGAIALALASERATWQITAVDKVEDAVALAKANRT 159

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              +  V+I++               F+ +K  D     F  I  +PP
Sbjct: 160 NLKLEQVEILQSD------------WFSAIKAHD-----FDLIVSNPP 190


>gi|194334971|ref|YP_002016831.1| hypothetical protein Paes_2182 [Prosthecochloris aestuarii DSM 271]
 gi|194312789|gb|ACF47184.1| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271]
          Length = 401

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 16/121 (13%)

Query: 200 EWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           E       G+ G   +++L  G G  ++ LA  F  V+  E        A  N     + 
Sbjct: 79  EKAARYKAGLMGGDRVIDLSGGLGIDAIFLASRFREVMYCERDAMLAAIAETNFRTLGIT 138

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           N+ +V   S    Q+              +    F  I+VDP R      + G+  A P 
Sbjct: 139 NISVVTGDSLSLLQS--------------VADDGFDWIYVDPARREHSGRSAGLRSASPD 184

Query: 318 I 318
           +
Sbjct: 185 V 185


>gi|328758427|gb|EGF72043.1| methyltransferase, HemK family [Propionibacterium acnes HL020PA1]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|327334815|gb|EGE76526.1| putative transferase [Propionibacterium acnes HL097PA1]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|315094236|gb|EFT66212.1| methyltransferase small domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|314965420|gb|EFT09519.1| methyltransferase small domain protein [Propionibacterium acnes
           HL082PA2]
 gi|315104888|gb|EFT76864.1| methyltransferase small domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327329215|gb|EGE70975.1| putative transferase [Propionibacterium acnes HL103PA1]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|314922383|gb|EFS86214.1| methyltransferase small domain protein [Propionibacterium acnes
           HL001PA1]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|313840376|gb|EFS78090.1| methyltransferase small domain protein [Propionibacterium acnes
           HL086PA1]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|313817525|gb|EFS55239.1| methyltransferase, HemK family [Propionibacterium acnes HL046PA2]
          Length = 338

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|313815328|gb|EFS53042.1| methyltransferase small domain protein [Propionibacterium acnes
           HL059PA1]
 gi|315099509|gb|EFT71485.1| methyltransferase small domain protein [Propionibacterium acnes
           HL059PA2]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|313772780|gb|EFS38746.1| methyltransferase small domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313810920|gb|EFS48634.1| methyltransferase small domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313831685|gb|EFS69399.1| methyltransferase small domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834433|gb|EFS72147.1| methyltransferase small domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314974774|gb|EFT18869.1| methyltransferase small domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977026|gb|EFT21121.1| methyltransferase small domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314985487|gb|EFT29579.1| methyltransferase small domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315097322|gb|EFT69298.1| methyltransferase small domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327331308|gb|EGE73047.1| putative transferase [Propionibacterium acnes HL096PA2]
 gi|327447313|gb|EGE93967.1| methyltransferase small domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327450241|gb|EGE96895.1| methyltransferase small domain protein [Propionibacterium acnes
           HL043PA2]
 gi|328761121|gb|EGF74665.1| putative transferase [Propionibacterium acnes HL099PA1]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|313765304|gb|EFS36668.1| methyltransferase small domain protein [Propionibacterium acnes
           HL013PA1]
 gi|314916043|gb|EFS79874.1| methyltransferase small domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917195|gb|EFS81026.1| methyltransferase small domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921694|gb|EFS85525.1| methyltransferase small domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314931099|gb|EFS94930.1| methyltransferase small domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314955032|gb|EFS99438.1| methyltransferase small domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959071|gb|EFT03173.1| methyltransferase small domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314969708|gb|EFT13806.1| methyltransferase small domain protein [Propionibacterium acnes
           HL037PA1]
 gi|315101984|gb|EFT73960.1| methyltransferase small domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110093|gb|EFT82069.1| methyltransferase small domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327454510|gb|EGF01165.1| methyltransferase small domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456580|gb|EGF03235.1| methyltransferase small domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328755561|gb|EGF69177.1| methyltransferase small domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328756890|gb|EGF70506.1| methyltransferase small domain protein [Propionibacterium acnes
           HL025PA2]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|289428864|ref|ZP_06430544.1| methyltransferase, HemK family [Propionibacterium acnes J165]
 gi|289157865|gb|EFD06088.1| methyltransferase, HemK family [Propionibacterium acnes J165]
 gi|313806372|gb|EFS44879.1| methyltransferase, HemK family [Propionibacterium acnes HL087PA2]
 gi|313822013|gb|EFS59727.1| methyltransferase, HemK family [Propionibacterium acnes HL036PA1]
 gi|313824091|gb|EFS61805.1| methyltransferase, HemK family [Propionibacterium acnes HL036PA2]
 gi|313826458|gb|EFS64172.1| methyltransferase, HemK family [Propionibacterium acnes HL063PA1]
 gi|314926590|gb|EFS90421.1| methyltransferase, HemK family [Propionibacterium acnes HL036PA3]
 gi|314961345|gb|EFT05446.1| methyltransferase, HemK family [Propionibacterium acnes HL002PA2]
 gi|314980311|gb|EFT24405.1| methyltransferase, HemK family [Propionibacterium acnes HL072PA2]
 gi|314987396|gb|EFT31487.1| methyltransferase, HemK family [Propionibacterium acnes HL005PA2]
 gi|314989063|gb|EFT33154.1| methyltransferase, HemK family [Propionibacterium acnes HL005PA3]
 gi|315082698|gb|EFT54674.1| methyltransferase, HemK family [Propionibacterium acnes HL027PA2]
 gi|315086057|gb|EFT58033.1| methyltransferase, HemK family [Propionibacterium acnes HL002PA3]
 gi|315087642|gb|EFT59618.1| methyltransferase, HemK family [Propionibacterium acnes HL072PA1]
 gi|327333296|gb|EGE75016.1| putative transferase [Propionibacterium acnes HL096PA3]
 gi|327445227|gb|EGE91881.1| methyltransferase, HemK family [Propionibacterium acnes HL013PA2]
 gi|332674647|gb|AEE71463.1| putative transferase [Propionibacterium acnes 266]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|288962762|ref|YP_003453056.1| sulfate adenylate transferase [Azospirillum sp. B510]
 gi|288915028|dbj|BAI76512.1| sulfate adenylate transferase [Azospirillum sp. B510]
          Length = 347

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFS-LVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +   L         +L+  CG+G  S L L      V+AV+  + +V+ AR    AN
Sbjct: 51  TETIRRALRGAIRGGDRVLDAGCGSGLLSFLALEAGAGEVVAVD--RDNVDLARDLARAN 108

Query: 255 HV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            + + ++ +        +         R  D  +       I +D PRS
Sbjct: 109 GLSDRIRFIEGDLNALAEGGGDGNGLGRF-DALLAFIYANHIIIDEPRS 156


>gi|282853294|ref|ZP_06262631.1| methyltransferase small domain protein [Propionibacterium acnes
           J139]
 gi|282582747|gb|EFB88127.1| methyltransferase small domain protein [Propionibacterium acnes
           J139]
 gi|314982831|gb|EFT26923.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091150|gb|EFT63126.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA4]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|258511961|ref|YP_003185395.1| 50S ribosomal protein L11 methyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478687|gb|ACV59006.1| ribosomal protein L11 methyltransferase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 316

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA 252
               M   +LA        ++++  G G  ++  A    +RV+A+++   +V AA  N+ 
Sbjct: 162 QTTQMCAEILAEVVRPGMRVVDVGTGTGVLAIAAALVGAERVVAIDLDPVAVSAATDNVR 221

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N + +   VR    +   A+R +  F    D+ + +     +    P
Sbjct: 222 TNGLEDRVDVR--QGDLLAALRPDETF----DLAVANILRDVVIALVP 263


>gi|260363434|ref|ZP_05776280.1| methyltransferase [Vibrio parahaemolyticus K5030]
 gi|260879380|ref|ZP_05891735.1| methyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|260895075|ref|ZP_05903571.1| methyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|224493304|sp|Q87P89|RLMI_VIBPA RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|308085964|gb|EFO35659.1| methyltransferase [Vibrio parahaemolyticus Peru-466]
 gi|308094122|gb|EFO43817.1| methyltransferase [Vibrio parahaemolyticus AN-5034]
 gi|308113740|gb|EFO51280.1| methyltransferase [Vibrio parahaemolyticus K5030]
          Length = 397

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 163 KEGLKETTGVLHGEEPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 210

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +            ++L  +   G F L  L     RV+  ++++P+++ A+YN
Sbjct: 211 RQQAMKYV---------KDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKYN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTQFDVVIMDPPKFAESKAQLN 313

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 314 GACRGYKDI 322


>gi|295129808|ref|YP_003580471.1| methyltransferase, HemK family [Propionibacterium acnes SK137]
 gi|291375527|gb|ADD99381.1| methyltransferase, HemK family [Propionibacterium acnes SK137]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|210075216|ref|XP_500507.2| YALI0B04774p [Yarrowia lipolytica]
 gi|199425136|emb|CAG82734.2| YALI0B04774p [Yarrowia lipolytica]
          Length = 457

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +   + + + +        +++ + G G  ++ LA ++D V+ ++I   S+  A+ N   
Sbjct: 225 VAEQVAQHLWSRFPDPNLVVVDAFGGAGGNAIQLAHYYDHVICIDIEPESITCAKQNAWV 284

Query: 254 NHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDI------------HSYRFKTIFVDP 299
             V   ++ V     E         EF  + DI              H  +F    ++P
Sbjct: 285 YGVSEKIQFVVGDCLEVL----ARPEFQSITDIIFGSPPWGGPSYKSHGGKFDLFVMEP 339


>gi|297190677|ref|ZP_06908075.1| methyltransferase type 11 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719900|gb|EDY63808.1| methyltransferase type 11 [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 208

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   +       T    GD L+L CGNG  +L LAR   RV AV+I+  +VE   
Sbjct: 24  QPNVRLTETV-------TGLPPGDALDLGCGNGGDALWLARRQWRVTAVDISAVAVERLA 76

Query: 249 YNIAANHVNN-VKIVRMSSKE 268
               +  +   V  VR    E
Sbjct: 77  ALAHSQGLGGRVTAVRHDLHE 97


>gi|171318514|ref|ZP_02907666.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           MEX-5]
 gi|171096300|gb|EDT41206.1| ribosomal protein L11 methyltransferase [Burkholderia ambifaria
           MEX-5]
          Length = 300

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LAR      V+ ++I   +VE+AR N   NH 
Sbjct: 156 MEWLEQSVKPGQS-VLDYGCGSGILAI-LARKCGANPVVGIDIDPQAVESARQNSERNHA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|149925824|ref|ZP_01914088.1| modification methylase, HemK family protein [Limnobacter sp.
           MED105]
 gi|149825941|gb|EDM85149.1| modification methylase, HemK family protein [Limnobacter sp.
           MED105]
          Length = 307

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 78/229 (34%), Gaps = 40/229 (17%)

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDD----------AWRECAIRLRDALHARK 146
           +P + + L Q    T  +   +  L+ H    D                +    +L A++
Sbjct: 6   KPTIESVLQQTREETGLAPSELRILMTHITGFDRVGLVTKGNRELPMDQLSAFKSLAAKR 65

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS--FTQPNAGINVHMLEWVLA 204
            Q + I    + K    R +  +   +  R      +E++  F Q  +    ++L     
Sbjct: 66  QQGEPIAYLVQQKEFYSRPFFVDPRVLIPRPETEELVEHALGFLQ--SKSTENLL----- 118

Query: 205 ATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                   +L++ CG+G  ++ LA       V A +I+  ++  A++N       N++ +
Sbjct: 119 ------TRVLDIGCGSGAIAVSLALENPILEVTATDISADALWVAQFNANELGAKNIRFL 172

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           +            E   N+          F  I  +PP   L D  +  
Sbjct: 173 QSD--------LFENLLNQTP-----PLAFDLICSNPPYIELGDEHLSQ 208


>gi|153838878|ref|ZP_01991545.1| methyltransferase [Vibrio parahaemolyticus AQ3810]
 gi|149747669|gb|EDM58583.1| methyltransferase [Vibrio parahaemolyticus AQ3810]
          Length = 397

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 163 KEGLKETTGVLHGEEPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 210

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +            ++L  +   G F L  L     RV+  ++++P+++ A+YN
Sbjct: 211 RQQAMKYV---------KDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKYN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTQFDVVIMDPPKFAESKAQLN 313

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 314 GACRGYKDI 322


>gi|50841731|ref|YP_054958.1| putative transferase [Propionibacterium acnes KPA171202]
 gi|289424689|ref|ZP_06426472.1| methyltransferase small domain protein [Propionibacterium acnes
           SK187]
 gi|50839333|gb|AAT82000.1| putative transferase [Propionibacterium acnes KPA171202]
 gi|289155386|gb|EFD04068.1| methyltransferase small domain protein [Propionibacterium acnes
           SK187]
 gi|313793197|gb|EFS41264.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802714|gb|EFS43932.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313814581|gb|EFS52295.1| methyltransferase small domain protein [Propionibacterium acnes
           HL025PA1]
 gi|314964609|gb|EFT08709.1| methyltransferase small domain protein [Propionibacterium acnes
           HL082PA1]
 gi|315078373|gb|EFT50404.1| methyltransferase small domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082159|gb|EFT54135.1| methyltransferase small domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315106317|gb|EFT78293.1| methyltransferase small domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327457146|gb|EGF03801.1| methyltransferase small domain protein [Propionibacterium acnes
           HL092PA1]
          Length = 505

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIVTNPPYVMAPPSRDG 248


>gi|83719303|ref|YP_441708.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           E264]
 gi|167580522|ref|ZP_02373396.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           TXDOH]
 gi|123537576|sp|Q2SZE1|PRMA_BURTA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|83653128|gb|ABC37191.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           E264]
          Length = 300

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+      V  ++I   +VEAAR N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGNVTGIDIDPQAVEAARQNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|90424781|ref|YP_533151.1| ribosomal L11 methyltransferase [Rhodopseudomonas palustris BisB18]
 gi|90106795|gb|ABD88832.1| LSU ribosomal protein L11P methyltransferase [Rhodopseudomonas
           palustris BisB18]
          Length = 296

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 12/123 (9%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV 256
           +L+ VL        ++L+L  G G  ++  A+    RV A +I   SV  AR N   N V
Sbjct: 145 LLDAVLKRRSPR--NVLDLGTGTGVLAIAAAKALQQRVTASDIDPVSVRVARDNARLNGV 202

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            ++     ++       R+   F+              I  +P R         +  +  
Sbjct: 203 GHLLDGICAAGFADAQFRQAAPFD---------LVLANILANPLRQLATPMAAHLAPSAD 253

Query: 317 HIL 319
            IL
Sbjct: 254 IIL 256


>gi|331667298|ref|ZP_08368163.1| protein SmtA [Escherichia coli TA271]
 gi|331065654|gb|EGI37547.1| protein SmtA [Escherichia coli TA271]
          Length = 234

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDHVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|329895002|ref|ZP_08270782.1| RNA methylase family UPF0020 [gamma proteobacterium IMCC3088]
 gi|328922570|gb|EGG29906.1| RNA methylase family UPF0020 [gamma proteobacterium IMCC3088]
          Length = 743

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 64/206 (31%), Gaps = 27/206 (13%)

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
           H+ + Q  ++       +   +DY+D  L +  R +  R    +                
Sbjct: 535 HSSQGQKHVVREGKAKLLVNLQDYLDTGLFLDHRPMRTRIAAEA---------------- 578

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK- 260
                      L L+C  G  S+  A     R ++V+++       R N+A N +     
Sbjct: 579 ------KGKRFLNLFCYTGTASIHAALGGAKRTVSVDLSNTYTAWYRENLALNGLAEATN 632

Query: 261 -IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-I 318
            IVR     +    +   +   L      + +      D  R  +      M    P  +
Sbjct: 633 AIVRSDVSAWLGTTKERFDLILLDPPSFSNSKKTDQSFDVQRDQVSLVQAAMAVLEPSGV 692

Query: 319 LYISCNPDSLCRDLSILSTTHTIERL 344
           LY S N      D   L+  + +  +
Sbjct: 693 LYFSNNRRGFKLD-DTLAEAYEVRDI 717


>gi|328885307|emb|CCA58546.1| Ribosomal RNA small subunit methyltransferase D [Streptomyces
           venezuelae ATCC 10712]
          Length = 193

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 15/125 (12%)

Query: 190 PNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAA 247
           P +      L     A  G+ G  + +LY G+G   +  L+R     L VE    + +  
Sbjct: 24  PTSDRAREGLFSTWEAFHGLDGARVADLYAGSGAVGIEALSRGAAHALLVEAEPRAAKTI 83

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           R NI    +   ++    +++                    +  +  +F+DPP +  D+ 
Sbjct: 84  RENIRTIGLPGAELRTGKAEQIVTG-------------PAPAAPYDLVFLDPPYAVSDEE 130

Query: 308 TVGMV 312
              ++
Sbjct: 131 LREIL 135


>gi|322491871|emb|CBZ27144.1| hypothetical protein, unknown function [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 260

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
               M EWV + +   QG  +LEL CG G     +A+H  +V+  + +  S+     ++A
Sbjct: 87  AAYPMCEWVNSHSDMFQGKCVLELGCGAGVLGFTVAQHARQVVLTDCSPVSLALVLESVA 146

Query: 253 ANHVNNVKIVRM 264
            N   N  +  +
Sbjct: 147 RNGYCNCDVAVL 158


>gi|302541615|ref|ZP_07293957.1| UbiE/COQ5 family methyltransferase [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459233|gb|EFL22326.1| UbiE/COQ5 family methyltransferase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 275

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 50/160 (31%), Gaps = 38/160 (23%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R   NS          +++  +          +L++ CG G  +  LA       
Sbjct: 22  RSHTWRTAANS--------AAYLVGHLKPHM-----RILDIGCGPGTITADLAELVPQGE 68

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V+ V+     +E AR       + N +       E         +F       +H+++  
Sbjct: 69  VVGVDTEPAILERARSAADERGLTNTRFAVADVHEL--------DFPDDSFCVVHAHQVL 120

Query: 294 TIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS--LCRD 331
               DP R+         ++    +    C P      RD
Sbjct: 121 QHVGDPVRA---------LREMRRV----CKPGGIVAARD 147


>gi|295696742|ref|YP_003589980.1| Methyltransferase type 11 [Bacillus tusciae DSM 2912]
 gi|295412344|gb|ADG06836.1| Methyltransferase type 11 [Bacillus tusciae DSM 2912]
          Length = 245

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNV 259
           W+   + G    +L+  CG G  +  LA+ F  RV  +++    +  AR       V   
Sbjct: 27  WIGQLSLGPGTRVLDAGCGTGRTACYLAKRFGCRVTGLDLQPLMIRKARRRARLEGVA-A 85

Query: 260 KIVRMSS 266
           + V    
Sbjct: 86  EFVPGDV 92


>gi|303323673|ref|XP_003071828.1| hypothetical protein CPC735_073650 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240111530|gb|EER29683.1| hypothetical protein CPC735_073650 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 277

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 2/115 (1%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
               G +  +L+L  GNG  +  LAR    V+A +     V  A          NVK   
Sbjct: 46  EERFGNELRVLDLATGNGLVAHWLARKGASVVATDGCDEMVRLAEK--RGEGTANVKYQV 103

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           +   +  Q     RE                    P    L  A   +++    I
Sbjct: 104 LDVTDSKQWEAFIREEVERGGAFDIITMNMAFMDVPDLEPLAAALPRILKRNGGI 158


>gi|240170947|ref|ZP_04749606.1| putative methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 208

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 2/91 (2%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           W++       GD+L++ CG G     LA    RV+ ++    +VE AR  + +  ++N  
Sbjct: 24  WLVDIAARHHGDVLDVGCGEGLLVQRLAAVSHRVVGIDPDAGTVERARRRLQS--IDNAS 81

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
           + R   + FT   +       L  I     R
Sbjct: 82  VDRCDFQSFTAPGQSFDVITFLASIHHQPLR 112


>gi|269837928|ref|YP_003320156.1| modification methylase, HemK family [Sphaerobacter thermophilus DSM
           20745]
 gi|269787191|gb|ACZ39334.1| modification methylase, HemK family [Sphaerobacter thermophilus DSM
           20745]
          Length = 284

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 34/180 (18%)

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
           A +  E LLR  L  ID  T          +Y RL D A  +   R RD L AR+   + 
Sbjct: 27  ARLDAEVLLRHLL-SIDRAT----------LYARLPDPAPPDTVERYRD-LIARRAAGEP 74

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           +      +  +  D++ +R     R LI R               +++EW LA  +   G
Sbjct: 75  VAYITGHREFMGLDFLVDR-----RVLIPRPE-----------TEYLVEWALAWLRERGG 118

Query: 212 D--LLELYCGNGNFSLVLARHFD----RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           D  ++++  G+G  ++ LA H D    RV+  + +  ++  A  N        V +V   
Sbjct: 119 DRLVVDVGTGSGAIAVSLAAHADDPALRVVGSDRSLDALRVAAINRDRLAPGRVALVAGD 178


>gi|53803066|ref|YP_115244.1| hypothetical protein MCA2850 [Methylococcus capsulatus str. Bath]
 gi|53756827|gb|AAU91118.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath]
          Length = 195

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 12/82 (14%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
             N H+L           G  L+L CG G  +L LAR    V A+++++  +EA  +   
Sbjct: 29  SQNEHLL--------PGGGRALDLACGLGGNALFLARRGFEVDAIDLSEAGIEALAHAAR 80

Query: 253 ANHVNNVKIVRMSSKEFTQAMR 274
              +     +     +  +   
Sbjct: 81  LEGLP----IHAQVGDVMEGQW 98


>gi|21219127|ref|NP_624906.1| methyltransferase [Streptomyces coelicolor A3(2)]
 gi|6448729|emb|CAB61288.1| putative methyltransferase [Streptomyces coelicolor A3(2)]
          Length = 246

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++ ++L A +     +L++ CG G F+L+LA     V+ V+ A  S++ AR        +
Sbjct: 25  LVPYLLMAGEFGARSVLDIGCGTGVFALLLADRGLEVVGVDPAGASLDVAR---GREGAD 81

Query: 258 NVKIVRMSSKEF 269
            V+ +   +   
Sbjct: 82  RVRWIEGDATSL 93


>gi|302343726|ref|YP_003808255.1| ribosomal protein L11 methyltransferase [Desulfarculus baarsii DSM
           2075]
 gi|301640339|gb|ADK85661.1| ribosomal protein L11 methyltransferase [Desulfarculus baarsii DSM
           2075]
          Length = 318

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 213 LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +L++ CG+G  +L  A+    +V+A++I   +V     N   N + 
Sbjct: 188 VLDVGCGSGILALAAAKLGVPKVVAIDIDPEAVRCTAENAMHNGLA 233


>gi|256789853|ref|ZP_05528284.1| methyltransferase [Streptomyces lividans TK24]
          Length = 246

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++ ++L A +     +L++ CG G F+L+LA     V+ V+ A  S++ AR        +
Sbjct: 25  LVPYLLMAGEFGARSVLDIGCGTGVFALLLADRGLEVVGVDPAGASLDVAR---GREGAD 81

Query: 258 NVKIVRMSSKEF 269
            V+ +   +   
Sbjct: 82  RVRWIEGDATSL 93


>gi|254820551|ref|ZP_05225552.1| putative methyltransferase [Mycobacterium intracellulare ATCC
           13950]
          Length = 203

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           W++       GD+L++ CG G  +  LA     V+ ++    SV  A   + +  + N  
Sbjct: 20  WLVGLAARRHGDVLDVGCGEGLLAQRLAPVSRSVVGLDADPVSVWRAAQRLQS--IGNAS 77

Query: 261 IVRMSSKEFTQAMRR 275
           +     ++  +A RR
Sbjct: 78  VEHGRFEDLDEAERR 92


>gi|284040451|ref|YP_003390381.1| ribosomal L11 methyltransferase [Spirosoma linguale DSM 74]
 gi|283819744|gb|ADB41582.1| ribosomal L11 methyltransferase [Spirosoma linguale DSM 74]
          Length = 276

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARY 249
           +      M+E  L      +  +L++  G G  +++ A+     VLA +I + +VE AR 
Sbjct: 122 HHETTAMMMEQQLGFDFSGKS-VLDVGSGTGILAILAAKMGAENVLAFDIEEWAVENARE 180

Query: 250 NIAANHVNNVKIVRMSSKEF 269
           N   N    V + + +  + 
Sbjct: 181 NAELNSCPQVTVFQGTIADV 200


>gi|228985203|ref|ZP_04145368.1| Methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228774498|gb|EEM22899.1| Methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 206

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       +
Sbjct: 1   MEKLVLQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA-----PD 55

Query: 259 VKIVRMSSKEF 269
              +   ++ F
Sbjct: 56  AAFIVDDARYF 66


>gi|147677215|ref|YP_001211430.1| ribosomal protein L11 methyltransferase [Pelotomaculum
           thermopropionicum SI]
 gi|189037699|sp|A5D3Y3|PRMA_PELTS RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|146273312|dbj|BAF59061.1| ribosomal protein L11 methylase [Pelotomaculum thermopropionicum
           SI]
          Length = 308

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN- 258
            +L       G + ++  G+G  ++  AR    RV+AV+I   +   A  N   N V   
Sbjct: 162 RLLEKYVRPGGTVYDVGTGSGVLAVAAARLGAGRVVAVDIDPLACRVAAGNAERNGVAGK 221

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           V++V+ +  E  +        N + D+           + P
Sbjct: 222 VQVVQGNLLEKVEGRADLVVANIIADVIAAFAPEAAGALAP 262


>gi|148655044|ref|YP_001275249.1| PUA domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567154|gb|ABQ89299.1| SAM-dependent methyltransferase [Roseiflexus sp. RS-1]
          Length = 396

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 14/111 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            V A   G +   L+ +C  G F++  AR     + AV+ ++ ++   R  +  N V   
Sbjct: 215 RVAAHCNGAET--LDCFCYTGGFTIAAARAGARHITAVDTSEAALSMLREGLTLNMV--A 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             V  +  +  + +RR RE  R         RF  + +DPP+     + V 
Sbjct: 271 TPVETAPGDAFKLLRRYREEQR---------RFDVVILDPPKFATSQSQVE 312


>gi|315503002|ref|YP_004081889.1| methyltransferase type 11 [Micromonospora sp. L5]
 gi|315409621|gb|ADU07738.1| Methyltransferase type 11 [Micromonospora sp. L5]
          Length = 242

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L CG GN +L+LARH   V+ V+ A  S+  AR   + N    V+ V   +     
Sbjct: 40  VLDLGCGTGNLALLLARHGRTVVGVDPAGASLAVAR---SKNREGRVRWVHGDATTLPP 95


>gi|229161755|ref|ZP_04289734.1| Methyltransferase type 11 [Bacillus cereus R309803]
 gi|228621722|gb|EEK78569.1| Methyltransferase type 11 [Bacillus cereus R309803]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 +   V          LL++  G G+ + +LA  F+ V+A+++ +  +E A+  I
Sbjct: 24  HAQGPDLQYVVQQVETRHNTRLLDIATGGGHVANILAPMFEEVVALDLTETMLEKAKGYI 83

Query: 252 AANHVNNVKIVRMSSKEFTQA 272
             N   NV  V  ++++   A
Sbjct: 84  KQNGHENVSFVAGNAEDLPFA 104


>gi|157960220|ref|YP_001500254.1| ribosomal protein L11 methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|189037704|sp|A8GZI2|PRMA_SHEPA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|157845220|gb|ABV85719.1| ribosomal protein L11 methyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 293

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+       + D+++  CG+G  ++  L    +RV  ++I   ++EA++ N   N V 
Sbjct: 149 LEWLDGLDYSNK-DVIDFGCGSGILAVAALKLGAERVTGIDIDYQAIEASKANAERNGVE 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|91785344|ref|YP_560550.1| modification methylase HemK [Burkholderia xenovorans LB400]
 gi|91689298|gb|ABE32498.1| [protein release factor]-glutamine N5-methyltransferase
           [Burkholderia xenovorans LB400]
          Length = 286

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 16/128 (12%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  LAA + +    +L+L  G G  ++ +A  R   +V A++ +  ++  A  N 
Sbjct: 97  TELLVETALAALENLSRPRVLDLGTGTGAIAVAIASMRPDAQVWALDHSAEALAVATRNA 156

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGLDDATV 309
           A           + +K            +   D    + RF  I  +PP   SG      
Sbjct: 157 ARL---------LDAKR--PGGAVALTQSDWYDSLDAALRFDVIVSNPPYIASGDPHLAQ 205

Query: 310 GMVQAYPH 317
           G ++  P 
Sbjct: 206 GDLRFEPR 213


>gi|161936282|ref|YP_131495.2| ribosomal protein L11 methyltransferase [Photobacterium profundum
           SS9]
 gi|60390454|sp|Q6LLY5|PRMA_PHOPR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
          Length = 294

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L     +   +++  CG+G  ++  L    ++V+ ++I   +++A+R N   N V+
Sbjct: 150 LEW-LDGQDLVGKTIIDFGCGSGILAIAALKLGAEKVIGIDIDPQAIQASRDNAERNGVS 208

Query: 258 N 258
           +
Sbjct: 209 D 209


>gi|46914918|emb|CAG21693.1| putative ribosomal protein L11 methyltransferase [Photobacterium
           profundum SS9]
          Length = 317

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L     +   +++  CG+G  ++  L    ++V+ ++I   +++A+R N   N V+
Sbjct: 173 LEW-LDGQDLVGKTIIDFGCGSGILAIAALKLGAEKVIGIDIDPQAIQASRDNAERNGVS 231

Query: 258 N 258
           +
Sbjct: 232 D 232


>gi|71665291|ref|XP_819617.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884926|gb|EAN97766.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 419

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 7/155 (4%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           V  RL  A  +L+    +  F   N          +L      +  +LE+  G+G  SL+
Sbjct: 63  VPGRLRHAPTSLVEAVNDFHFAMMNDQPRNEFYYELLKRHVTPETGVLEIGAGSGLLSLM 122

Query: 227 LAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKD 284
            A+     V+AVE +      AR NI AN + + V ++ M S E T      R      D
Sbjct: 123 AAQLGAKWVVAVEGSAEMANLARANICANKMEHKVTVLHMLSTELT-----LRHLPDRPD 177

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           + +       +  +     + D    +++    I+
Sbjct: 178 VMVSEILGTLLLGESALDYIADVRERLLKPTTKII 212


>gi|148826081|ref|YP_001290834.1| hypothetical protein CGSHiEE_05375 [Haemophilus influenzae PittEE]
 gi|229847125|ref|ZP_04467230.1| HemK [Haemophilus influenzae 7P49H1]
 gi|148716241|gb|ABQ98451.1| HemK [Haemophilus influenzae PittEE]
 gi|229809954|gb|EEP45675.1| HemK [Haemophilus influenzae 7P49H1]
 gi|309973232|gb|ADO96433.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Haemophilus influenzae R2846]
          Length = 292

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 80/237 (33%), Gaps = 58/237 (24%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR- 139
             +   M ++      E      L  + ++T +S   I+T       DD   +  +RL+ 
Sbjct: 5   EWLAQAMADLAQKNPTENSKIDALVLLQHVTGKSRTQILTF------DDTEIDEKVRLKL 58

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
            AL  R+ + + I       I  ++++    L V+  TLI R                ++
Sbjct: 59  TALLDRRLKGEPIAY-----ILGEKEFWSLPLNVSKGTLIPRPD-----------TESLV 102

Query: 200 EWVLA------ATKGIQGDLLELYCGNGNFSLVLARHFD----------RVLAVEIAKPS 243
           E  L               +L+L  G G  +L LA               ++ V++    
Sbjct: 103 EKALQIALEKLEENPPHFRILDLGTGTGAIALALASELAPICQKRHIPLEIIGVDLMPDV 162

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           V  AR N   N + NV+ ++ S                    D  + +F  I  +PP
Sbjct: 163 VALARSNAERNQL-NVQFLQSS------------------WFDNITGKFDLIVSNPP 200


>gi|332526456|ref|ZP_08402572.1| hypothetical protein RBXJA2T_11286 [Rubrivivax benzoatilyticus JA2]
 gi|332110582|gb|EGJ10905.1| hypothetical protein RBXJA2T_11286 [Rubrivivax benzoatilyticus JA2]
          Length = 251

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++W+        G  L++ CGNG  ++ LA     V  V+++  +++ A        
Sbjct: 61  ENLVDWLQRGLIAPPGRALDVGCGNGRNAVWLAGQGFEVHGVDLSAQALDWAGELARQRG 120

Query: 256 VN 257
           V 
Sbjct: 121 VA 122


>gi|321453646|gb|EFX64862.1| hypothetical protein DAPPUDRAFT_204530 [Daphnia pulex]
          Length = 266

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +     A       +L++ CG G  +  L R    V  ++ ++ ++E A  +    ++ N
Sbjct: 70  VANARQAFPLAGFKVLDVGCGAGILTESLGRLGAEVTGIDPSEENIEVAYRHAKRINLRN 129

Query: 259 VKIVRMSSKEF 269
           V     + + F
Sbjct: 130 VAYEANTIEHF 140


>gi|315658608|ref|ZP_07911478.1| SAM binding domain protein,PUA domain-containing protein
           [Staphylococcus lugdunensis M23590]
 gi|315496239|gb|EFU84564.1| SAM binding domain protein,PUA domain-containing protein
           [Staphylococcus lugdunensis M23590]
          Length = 390

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 14/114 (12%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
              +   L      Q ++L L+   G FS++ A H     +V++A  S      N   N 
Sbjct: 201 QKEVRKKLRDQYAEQKNVLNLFSYTGAFSVIAANHAQSTTSVDLANRSRALTEENFGLNG 260

Query: 256 VN--NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           ++     I  M + +F +   R   F            + TI +DPP    +  
Sbjct: 261 IDPKTQFIYVMDTFDFYKYAHRHNRF------------YDTIVIDPPSFARNKK 302


>gi|315604644|ref|ZP_07879707.1| HemK family modification methylase [Actinomyces sp. oral taxon 180
           str. F0310]
 gi|315313656|gb|EFU61710.1| HemK family modification methylase [Actinomyces sp. oral taxon 180
           str. F0310]
          Length = 303

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 4/109 (3%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVN 257
           E         +  +++L  G+G  +  +A   +   V AVE        A  N       
Sbjct: 112 EAAAVVRARGEARVVDLCTGSGAIAFSVATEAEHTEVWAVEKEPDPFALACRNRDLLGAR 171

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            V + R  + +   A     +      +    Y         P +  D 
Sbjct: 172 GVHLERGDATD--PATLAHLDAMVDVVVTNPPYVPADEMPTQPEAAADP 218


>gi|289551107|ref|YP_003472011.1| LSU methyltransferase RlmI [Staphylococcus lugdunensis HKU09-01]
 gi|289180639|gb|ADC87884.1| LSU methyltransferase RlmI [Staphylococcus lugdunensis HKU09-01]
          Length = 390

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 14/114 (12%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
              +   L      Q ++L L+   G FS++ A H     +V++A  S      N   N 
Sbjct: 201 QKEVRKKLRDQYAEQKNVLNLFSYTGAFSVIAANHAQSTTSVDLANRSRALTEENFGLNG 260

Query: 256 VN--NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           ++     I  M + +F +   R   F            + TI +DPP    +  
Sbjct: 261 IDPKTQFIYVMDTFDFYKYAHRHNRF------------YDTIVIDPPSFARNKK 302


>gi|312113771|ref|YP_004011367.1| magnesium protoporphyrin O-methyltransferase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218900|gb|ADP70268.1| magnesium protoporphyrin O-methyltransferase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 232

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ++ W+     G    LL+  CG G  S+  AR    V+AV+++   V  A+  +  + 
Sbjct: 50  ATLMSWLPDDLSG--ARLLDAGCGTGLLSVEAARRGAHVVAVDLSPTLVGIAQERMPEDV 107

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            + ++       +   A R   +F    D  IH      +      + L D 
Sbjct: 108 ADRIEFYSGDMLD---ASRGRYDFCVAMDSLIHYKADDLVSALSGLAALADQ 156


>gi|254569750|ref|XP_002491985.1| S-adenosylmethionine-dependent methyltransferase of the seven
           beta-strand family [Pichia pastoris GS115]
 gi|238031782|emb|CAY69705.1| S-adenosylmethionine-dependent methyltransferase of the seven
           beta-strand family [Pichia pastoris GS115]
 gi|328351520|emb|CCA37919.1| methyltransferase [Pichia pastoris CBS 7435]
          Length = 440

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
           +  N+     +L        D+++LY G G F+L  LA+  +RV   EI   S++    +
Sbjct: 241 SRGNIKEKSRILEFRDVQGTDVVDLYAGIGYFTLSYLAKGANRVYCWEINPWSIQGLIKS 300

Query: 251 IAANH 255
             AN+
Sbjct: 301 CKANN 305


>gi|222635099|gb|EEE65231.1| hypothetical protein OsJ_20390 [Oryza sativa Japonica Group]
          Length = 306

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +L+ + G G  S+        V+AVEI    VE A +N     V++ ++ V         
Sbjct: 148 VLDAFAGVGGNSI----QGCYVVAVEIDPRKVELAAHNARIYGVDDMIEFVVADFFHLAP 203

Query: 272 AMRREREFNRLKDIDIHSYRFKTIF---VDPPRSGLDDATVGMVQAYPHIL 319
           +++ +  F  L      SY    ++   +  PR G         +  P+I+
Sbjct: 204 SLKADLGF-LLPPWGGPSYSQAQVYSLDMLKPRDGF-TIFQAAQEISPNII 252


>gi|20093435|ref|NP_619510.1| hypothetical protein MA4656 [Methanosarcina acetivorans C2A]
 gi|19918810|gb|AAM07990.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 257

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +W+L +    + ++L+L CG G ++ +LA    +V  V+ +K S+E AR      +++ +
Sbjct: 35  DWILNSVNLERMNILDLGCGPGLYAELLAERGHKVTGVDFSKNSIEYARSEAIKKNLD-I 93

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDI 287
           K V ++  E  +  + +       D  +
Sbjct: 94  KYVNLNYLELREENKYDLVMMVFTDFGV 121


>gi|117919222|ref|YP_868414.1| HemK family modification methylase [Shewanella sp. ANA-3]
 gi|117611554|gb|ABK47008.1| modification methylase, HemK family [Shewanella sp. ANA-3]
          Length = 286

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 19/108 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   ++ AV+  + +V  A+ N  
Sbjct: 100 TEILVETALNLPLESNAKVLDLGTGTGAIALALASERATWQITAVDKVEDAVALAKANRT 159

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              +  V+I++               F+ +K  D     F  I  +PP
Sbjct: 160 NLKLEQVEILQSD------------WFSAIKAHD-----FDLIVSNPP 190


>gi|327474550|gb|EGF19955.1| rRNA methylase [Streptococcus sanguinis SK408]
          Length = 183

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDTVVDATMGNGHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           NNV+++    +   Q
Sbjct: 66  NNVQLILSGHETLDQ 80


>gi|326561510|gb|EGE11854.1| ribosomal protein L11 methyltransferase [Moraxella catarrhalis
           46P47B1]
          Length = 310

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W LAA +     +++  CG+G   +  L     +VLAV+I   +V A R N A N V+
Sbjct: 153 LDW-LAAQELSDKLVIDYGCGSGILGVAALLLGARQVLAVDIDPQAVLATRQNAALNGVD 211

Query: 258 NVKIVRMSSK 267
           +  +  + ++
Sbjct: 212 DRLLAFLPAE 221


>gi|317121005|ref|YP_004101008.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermaerobacter marianensis DSM 12885]
 gi|315590985|gb|ADU50281.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermaerobacter marianensis DSM 12885]
          Length = 295

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E VL         + +L  G G  ++ LA  R    VLA + +  +++ AR N A
Sbjct: 107 TEVLVEVVLRTVPAGPAVVADLGTGTGIVAVTLAAERPAWTVLASDCSAAALKVARENAA 166

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            + V+     R    ++ + +       +L  +   S        D PR
Sbjct: 167 RHGVDGRM--RFYVGDWAEPLLAAGWAGKLAAV--ASNPPYVAAADLPR 211


>gi|311900211|dbj|BAJ32619.1| putative methyltransferase [Kitasatospora setae KM-6054]
          Length = 263

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 7/133 (5%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGN 220
           ++R   DER+ V      Y      F          +L++ LA    + G  LL L C  
Sbjct: 18  INRANWDERVPVHVGGKFYDLP--GFV----AGADTLLDFELAEVGEVTGKQLLHLQCHL 71

Query: 221 GNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           G  +L  AR   RV  ++ + P+V  A         +  + V        +A+  ER   
Sbjct: 72  GLDTLSWARRGARVTGLDFSAPAVAEAAKLAERIGADTARFVVSDVYAAAEALAGERFDV 131

Query: 281 RLKDIDIHSYRFK 293
                    +   
Sbjct: 132 VYTGRGALPWLPD 144


>gi|291454160|ref|ZP_06593550.1| methylase [Streptomyces albus J1074]
 gi|291357109|gb|EFE84011.1| methylase [Streptomyces albus J1074]
          Length = 285

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 25/132 (18%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARH 230
             R L  +     F          ++ W + A +    ++  +++L  G+G  +L LA+ 
Sbjct: 79  YFRYLELQVGPGVF--VPRPETESVVGWAIDAVRAMDVVEPLVVDLCSGSGAIALALAQE 136

Query: 231 FDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
             R  V AVE+++ ++   R N+     + V + +  +            F  L ++D  
Sbjct: 137 VPRSTVHAVELSEDALVWTRKNVEG---SRVHLHQGDA------------FGALPELD-- 179

Query: 289 SYRFKTIFVDPP 300
             +   +  +PP
Sbjct: 180 -GQVDLVISNPP 190


>gi|268592336|ref|ZP_06126557.1| methyltransferase, UbiE/COQ5 family [Providencia rettgeri DSM 1131]
 gi|291312121|gb|EFE52574.1| methyltransferase, UbiE/COQ5 family [Providencia rettgeri DSM 1131]
          Length = 253

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 180 YRQIENSF--TQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLA 236
           + Q  NS+  +Q +A         +    +G QG D+L+L CG G+ S   A     V A
Sbjct: 12  FDQQANSYLTSQVHAQGEDL--LVLQQLLQGCQGEDVLDLGCGAGHASFHAAPLVKSVTA 69

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +++   +     N     +NN+   + +++  
Sbjct: 70  YDLSDSMLNVVAKNAQERELNNITTCKGTAESL 102


>gi|171056830|ref|YP_001789179.1| PUA domain-containing protein [Leptothrix cholodnii SP-6]
 gi|170774275|gb|ACB32414.1| PUA domain containing protein [Leptothrix cholodnii SP-6]
          Length = 397

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L  Y   G FS+  LA     V++V+ + P++  A  ++  N  +  +   + + +  
Sbjct: 224 RVLNCYSYTGGFSVAALAGGASEVVSVDSSGPALARASAHVTLNGFDAARHTALDA-DVN 282

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
             +R+                F  I +DPP+     A+     +AY  I
Sbjct: 283 ATLRQLL---------AEGRTFDAIVLDPPKFAPTPASAERAARAYKDI 322


>gi|196042018|ref|ZP_03109304.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus NVH0597-99]
 gi|229091895|ref|ZP_04223084.1| Methyltransferase type 11 [Bacillus cereus Rock3-42]
 gi|196027152|gb|EDX65773.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus NVH0597-99]
 gi|228691475|gb|EEL45234.1| Methyltransferase type 11 [Bacillus cereus Rock3-42]
          Length = 261

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFKEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|187921472|ref|YP_001890504.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           phytofirmans PsJN]
 gi|187719910|gb|ACD21133.1| DNA methylase N-4/N-6 domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 301

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--SVEAARYNIAAN 254
            ++E ++ A+    G +L+ + G+G  ++  AR     +  EI +   ++   R + AAN
Sbjct: 224 EIVERMVLASCPKGGRVLDPFMGSGTTAVACARQQREFVGYEINESYCAIARERVSAAAN 283


>gi|322703617|gb|EFY95223.1| 2-heptaprenyl-1,4-naphthoquinone methyltransferase, putative
           [Metarhizium anisopliae ARSEF 23]
          Length = 238

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           G LL+  CG G  S  L     + + ++IA+  VE    N  AN + 
Sbjct: 48  GRLLDYACGTGLVSRALGADLSQCVGIDIAESMVERYNANAKANGLA 94


>gi|320034984|gb|EFW16926.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 277

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 2/115 (1%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
               G +  +L+L  GNG  +  LAR    V+A +     V  A          NVK   
Sbjct: 46  EERFGNELRVLDLATGNGLVAHWLARKGASVVATDGCDEMVRLAEK--RGEGTANVKYQV 103

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           +   +  Q     RE                    P    L  A   +++    I
Sbjct: 104 LDVTDSKQWEAFIREEVERGGAFDIITMNMAFMDVPDLEPLAAALPRILKRNGGI 158


>gi|297161272|gb|ADI10984.1| methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 260

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFT 270
           D+L+   G+GNF++ +AR   RV  V+ +  ++ A     A     + V+ V+  + +  
Sbjct: 46  DVLDTGGGSGNFAVPVARLGHRVTVVDPSPNALFALERRAAEAGVADRVRGVQGDAADLF 105

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           +   R          D+        +VD P  GL +A   +
Sbjct: 106 EVAER-------GGYDVVLCHGVLEYVDDPAEGLRNAAAAL 139


>gi|257092768|ref|YP_003166409.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045292|gb|ACV34480.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 221

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +LE+  G+G  + +LA + + V  VEI     E AR+N+    + NV +    + +   A
Sbjct: 86  VLEVGTGSGYMAALLAANAEYVHTVEIDPVLAETARHNLRQAGITNVSVEVGDASQGWSA 145

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                           S  +  I +      L +A +  ++    ++
Sbjct: 146 ----------------SSPYDVIVISGALRELPEAFLQQLKPGGRLV 176


>gi|239928030|ref|ZP_04684983.1| hypothetical protein SghaA1_07386 [Streptomyces ghanaensis ATCC
           14672]
 gi|291436364|ref|ZP_06575754.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339259|gb|EFE66215.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 217

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +L++ CG G+ S +LA     V  V++    V+ A+  +    +   + +   + 
Sbjct: 50  VLDVGCGTGSLSKLLAEAGHHVTGVDLTPKMVDQAQAKLRVAGLEG-RFLVGDAA 103


>gi|255656431|ref|ZP_05401840.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-23m63]
 gi|296450122|ref|ZP_06891883.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP08]
 gi|296878503|ref|ZP_06902508.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP07]
 gi|296260885|gb|EFH07719.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP08]
 gi|296430310|gb|EFH16152.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           NAP07]
          Length = 315

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L         + ++ CG+G  ++  A+     V+AV++ + +V+ A+ N+  
Sbjct: 163 TTSMCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLE 222

Query: 254 NHVN-NVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N V  +V ++  +  +  +        N + DI
Sbjct: 223 NKVEKSVSVMHGNLTDVIKDKADVIVANIIADI 255


>gi|152986068|ref|YP_001347390.1| hypothetical protein PSPA7_2014 [Pseudomonas aeruginosa PA7]
 gi|150961226|gb|ABR83251.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 253

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  +L+L CG G+ S  +A     V+A +++   +     + A   + N++  R  ++ 
Sbjct: 42  PEARVLDLGCGAGHVSFQVAALAGEVVAYDLSAEMLAVVAQSAAQRGMANIRTERGRAES 101

Query: 269 FTQA 272
              A
Sbjct: 102 LPFA 105


>gi|83815482|ref|YP_446560.1| arsenite S-adenosylmethyltransferase [Salinibacter ruber DSM 13855]
 gi|83756876|gb|ABC44989.1| cyclopropane-fatty-acyl-phospholipid synthase [Salinibacter ruber
           DSM 13855]
          Length = 270

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 39/134 (29%), Gaps = 15/134 (11%)

Query: 212 DLLELYCGNGNFSLVLARHF----DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G     +AR        V  V+ A+  V  AR N      +NV       +
Sbjct: 76  RVLDLGSGAG-MDAFVARRTVGPDGHVHGVDFAEEMVAKARANADTLDYDNVTFEVGDIE 134

Query: 268 EF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP----H 317
                      +      N + D +    +         R  + D               
Sbjct: 135 ALPVESGAFDVILSNCVLNLVPDKEAAFAQMHRALRPGGRFSVSDVVHAGALPDGLREAA 194

Query: 318 ILYISCNPDSLCRD 331
            LY+ C   ++ RD
Sbjct: 195 ELYVGCVAGAMERD 208


>gi|17988080|ref|NP_540714.1| methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260563223|ref|ZP_05833709.1| SAM dependent methyltransferase [Brucella melitensis bv. 1 str.
           16M]
 gi|17983830|gb|AAL52978.1| methyltransferase [Brucella melitensis bv. 1 str. 16M]
 gi|260153239|gb|EEW88331.1| SAM dependent methyltransferase [Brucella melitensis bv. 1 str.
           16M]
          Length = 173

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFT 270
           +L L+   G  SLV AR    V  V+ +K ++  AR N     +++  ++ +   + +F 
Sbjct: 1   MLNLFGYTGVASLVAARAGAEVTHVDASKKAILWARENQEMAGLSDKPIRWICEDAMKFV 60

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD--ATVGMVQAYPHILYISCNPDSL 328
           Q   R   F            +  I +DPP  G         + +  P ++  +C     
Sbjct: 61  QREERRGSF------------YDIILLDPPAYGRGPSGEVWQLFEHLPAMV-DTCRAILS 107

Query: 329 CRDLSILSTTHTIE 342
            + L+++ T ++I 
Sbjct: 108 AKPLAVILTAYSIR 121


>gi|134111959|ref|XP_775515.1| hypothetical protein CNBE2290 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258174|gb|EAL20868.1| hypothetical protein CNBE2290 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 596

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEF 269
           ++++ CG G  S++ A+     V A+E +  +V+ AR NI  N   +V  +++   ++ 
Sbjct: 254 VMDVGCGTGILSMLAAKAGAKHVYAIEASGLAVK-ARENIQKNGFADVITVIQGKVEDV 311


>gi|291520819|emb|CBK79112.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Coprococcus catus GD/7]
          Length = 289

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 10/87 (11%)

Query: 187 FTQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVE 238
           F   N  +         ++E  LA  K  +  LL++  G+G   L LA+       + V+
Sbjct: 90  FF-VNESVLIPRQDTEVLVETALAMMKP-ECRLLDMCTGSGCILLSLAKLGTVAEGVGVD 147

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMS 265
           I++ +++ A  N     ++ VK+V   
Sbjct: 148 ISEGALKVAERNRENLGLSQVKLVHSD 174


>gi|255527290|ref|ZP_05394170.1| methyltransferase [Clostridium carboxidivorans P7]
 gi|296188353|ref|ZP_06856745.1| hypothetical protein CLCAR_3880 [Clostridium carboxidivorans P7]
 gi|255509028|gb|EET85388.1| methyltransferase [Clostridium carboxidivorans P7]
 gi|296047479|gb|EFG86921.1| hypothetical protein CLCAR_3880 [Clostridium carboxidivorans P7]
          Length = 246

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 20/154 (12%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNN-VKI 261
           A      ++++L  G G    +LA      +++ +EI +  VE A  +   N + + +K 
Sbjct: 42  AVVKRNAEVIDLCTGTGIVPFILAGKTEASKIVGIEIQEEMVEMADRSCMFNKLEDKIKF 101

Query: 262 VRMSSKE--FTQAMRREREFN-----RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +    K+  F + + +          +LK+  I +   K       R  +      +++A
Sbjct: 102 INTDLKDLKFLKNLSKVDVVTVNPPYKLKNSGIVNPNDKDAIA---RHEICCTLEDVIKA 158

Query: 315 YPHIL------YISCNPDSLCRDLSILSTTHTIE 342
              +L      Y+   PD L  D+  L   + IE
Sbjct: 159 CKAVLKDNGRMYMIHRPDRLA-DIICLMRKYKIE 191


>gi|169830639|ref|YP_001716621.1| type 12 methyltransferase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637483|gb|ACA58989.1| Methyltransferase type 12 [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 208

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           N+     ++   K   G   LE+ CG GN ++ LA    RV++++ +   +E A   IA 
Sbjct: 26  NIKPYRQIVKRLKISPGRSALEVGCGTGNLTVSLAAAMARVMSIDFSSRMLERAAGKIAR 85

Query: 254 NHVNNVKIVRMSSKEFTQ 271
               NV   +M++ + T 
Sbjct: 86  RGFKNVTFRQMNAFDLTP 103


>gi|308380039|ref|ZP_07488465.2| hypothetical protein hemK [Mycobacterium tuberculosis SUMu011]
 gi|308399357|ref|ZP_07492977.2| hypothetical protein hemK [Mycobacterium tuberculosis SUMu012]
 gi|18275934|sp|Q10602|HEMK_MYCTU RecName: Full=Protein methyltransferase hemK homolog; AltName:
           Full=M.MtuHHemKP
 gi|308362831|gb|EFP51682.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu011]
 gi|308366497|gb|EFP55348.1| hypothetical protein hemK [Mycobacterium tuberculosis SUMu012]
          Length = 304

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           TV+   ++       F          +L W  A +   +  +++   G+G  ++ LA+H 
Sbjct: 74  TVSFGPVVLHVGPGVF--VPRPETEAILAWATAQSLPARPLIVDACTGSGALAVALAQHR 131

Query: 232 ------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R++ ++ +  +++ AR N A      V++VR      T  +  E +      +
Sbjct: 132 ANLGLKARIIGIDDSDCALDYARRNAAG---TPVELVRADVT--TPRLLPELDGQVDLMV 186

Query: 286 DIHSYRFKTIFVDP 299
               Y      ++P
Sbjct: 187 SNPPYIPDAAVLEP 200


>gi|30262103|ref|NP_844480.1| hypothetical protein BA_2080 [Bacillus anthracis str. Ames]
 gi|47527373|ref|YP_018722.1| hypothetical protein GBAA_2080 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184944|ref|YP_028196.1| hypothetical protein BAS1933 [Bacillus anthracis str. Sterne]
 gi|65319387|ref|ZP_00392346.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str.
           A2012]
 gi|170706031|ref|ZP_02896493.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|229601067|ref|YP_002866464.1| hypothetical protein BAA_2146 [Bacillus anthracis str. A0248]
 gi|254758302|ref|ZP_05210329.1| hypothetical protein BantA9_08330 [Bacillus anthracis str.
           Australia 94]
 gi|30256729|gb|AAP25966.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gi|47502521|gb|AAT31197.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178871|gb|AAT54247.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
 gi|170129033|gb|EDS97898.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
 gi|229265475|gb|ACQ47112.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
          Length = 237

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +LE ++         + +L CG G+ +  L  +   V  ++ +   +E AR N    
Sbjct: 28  AYLLLEKLVLQYAPPHSHISDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA--- 84

Query: 255 HVNNVKIVRMSSKEF 269
              +   +   ++ F
Sbjct: 85  --PDAAFIVDDARYF 97


>gi|328782578|ref|XP_393721.4| PREDICTED: hypothetical protein LOC410239 [Apis mellifera]
          Length = 1110

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 186  SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            S+          + E +    K     +++ +CG G  ++  A   +RVLA++I    +E
Sbjct: 932  SWFSVTP---EKIAEHIAERCK--CDTIIDAFCGAGGNAIQFAFTCERVLAIDIDPVKIE 986

Query: 246  AARYNIAANHVNN-VKIVRMS 265
             AR N     V++ ++ +   
Sbjct: 987  LARNNARIYGVDDRIEFIVGD 1007


>gi|307130844|ref|YP_003882860.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Dickeya dadantii 3937]
 gi|306528373|gb|ADM98303.1| predicted S-adenosyl-L-methionine-dependent methyltransferase
           [Dickeya dadantii 3937]
          Length = 267

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           LE +L         +L+   G G  S  LA    +VL  +++   +  AR     +   +
Sbjct: 34  LEILLTRLPSRPLRILDAGGGEGPMSRRLAALGHQVLLCDLSDEMIARAREAAQEHGVAD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ VR ++++    + +  + 
Sbjct: 94  NMRFVRCAAQDVGAHLSQPVDL 115


>gi|302868446|ref|YP_003837083.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302571305|gb|ADL47507.1| Methyltransferase type 11 [Micromonospora aurantiaca ATCC 27029]
          Length = 250

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              + E   A   G    LL++ CG G      AR FDRV  +E++   VEAAR N    
Sbjct: 34  AAFVAEQARALLPG-AATLLDVACGTGAHLRAFARLFDRVEGLELSPAMVEAARTN---- 88

Query: 255 HVNNVKIVRMSSKEF 269
            +    +     + F
Sbjct: 89  -IPGAVVHHGDMRSF 102


>gi|237757132|ref|ZP_04585565.1| ribosomal protein L11 methyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237690709|gb|EEP59884.1| ribosomal protein L11 methyltransferase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 225

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           ++         ++++ CG G  S+  A+    V A++I + +VE  + N   N V+ +  
Sbjct: 80  LIPKYVSQGDKVIDVGCGTGILSIAAAKFGAEVDAIDIEREAVEECKINAWENGVS-INC 138

Query: 262 VRMSSKEFTQ 271
            + S ++ ++
Sbjct: 139 WQGSIEDISK 148


>gi|256822180|ref|YP_003146143.1| HemK family modification methylase [Kangiella koreensis DSM 16069]
 gi|256795719|gb|ACV26375.1| modification methylase, HemK family [Kangiella koreensis DSM 16069]
          Length = 304

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 21/138 (15%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
           ++  +LL D  +     + + +  RK    +    NK        Y+DER+ V  R+ I 
Sbjct: 64  MLTAKLLADEKKHLIHAIFERVENRKPLAYIT---NKAYFVGLEFYIDERVLV-PRSPIA 119

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVE 238
             IEN F                   +     +L+L CG+G   L +A +     V+  +
Sbjct: 120 ELIENDFY---------------PWLEADNPRILDLCCGSGCIGLAIAAYIDDAEVVLSD 164

Query: 239 IAKPSVEAARYNIAANHV 256
           I+  ++  A  N     +
Sbjct: 165 ISDDAITVADINNERLGL 182


>gi|226192654|pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
 gi|226192655|pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
 gi|226192656|pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
 gi|226192657|pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
           Synthase Tgs1 Bound To M7gpppa (Inactive Form)
          Length = 206

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS 265
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +   
Sbjct: 47  VVDAFCGVGGNTIQFALTGXRVIAIDIDPVKIALARNNAEVYGIADKIEFICGD 100


>gi|209885382|ref|YP_002289239.1| protein-L-isoaspartate O-methyltransferase [Oligotropha
           carboxidovorans OM5]
 gi|229485651|sp|B6JFP0|PIMT_OLICO RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|209873578|gb|ACI93374.1| protein-L-isoaspartate O-methyltransferase [Oligotropha
           carboxidovorans OM5]
          Length = 217

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 11/131 (8%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +  +M E +       +   LE+  G+G  + VL+R   +V+ VE  +   + AR  +
Sbjct: 66  PYVVAYMTEQLRTH---PRHRALEIGTGSGYQAAVLSRLCRQVVTVERYRTLADTARARL 122

Query: 252 AANHVNNVKIVRMSSKEFTQAMR------REREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           AA    NV++V     +    +              + D  +       I + P   G  
Sbjct: 123 AALGCRNVEVVVGDGYDVPDTLGTFDRIIVTAAMETIPDSLMERLEPDGIMLVP--VGPP 180

Query: 306 DATVGMVQAYP 316
           +    +V+   
Sbjct: 181 EGVQQLVRLRK 191


>gi|170017869|ref|YP_001728788.1| 16S RNA G1207 methylase RsmC [Leuconostoc citreum KM20]
 gi|169804726|gb|ACA83344.1| 16S RNA G1207 methylase RsmC [Leuconostoc citreum KM20]
          Length = 213

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 20/126 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAA 253
              MLE  L       G +L+L  G G   + +A+   R V  V++ + ++E A+ N   
Sbjct: 54  TRTMLE-ALETVIINDGKILDLGTGYGPVGIAIAKAMSRQVDMVDVNERALELAQQNAQK 112

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMV 312
           N V  +  +  S             ++++ D      ++  I  +PP R+G    TV + 
Sbjct: 113 NGVTQLTRIFQS-----------NIYDKITD------KYALILTNPPIRAGKAVVTVMLQ 155

Query: 313 QAYPHI 318
            A  H+
Sbjct: 156 DAIKHL 161


>gi|320450149|ref|YP_004202245.1| methyltransferase, UbiE/COQ5 family [Thermus scotoductus SA-01]
 gi|320150318|gb|ADW21696.1| methyltransferase, UbiE/COQ5 family [Thermus scotoductus SA-01]
          Length = 256

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 22/60 (36%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
               L++  G G+ +L LA     V+ +++                + NV+ +   ++  
Sbjct: 44  SERALDVATGPGHTALALAPFVREVIGIDLTPEMAMPFAQAARERGLRNVRFLVGDAESL 103


>gi|317485128|ref|ZP_07944010.1| methyltransferase domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316923663|gb|EFV44867.1| methyltransferase domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 230

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A +   ++   L     +   +L+  CG G FS+++AR    +  V+ ++  +E AR N+
Sbjct: 33  AKVWDELIAEQLPWKHPL--RILDAGCGPGFFSILMARRGHEITGVDYSEAMIECARENV 90

Query: 252 AANHV--NNVKIVRMSSKEFT 270
             NH    +    +M ++  T
Sbjct: 91  E-NHSPEASAYFSQMDAQNLT 110


>gi|269468793|gb|EEZ80397.1| 16S RNA G1207 methylase RsmC [uncultured SUP05 cluster bacterium]
          Length = 196

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               L+L CG G   L +A+      V  V+    +VE +  N   N+ NN +     +
Sbjct: 55  SDKCLDLGCGYGPIGLAVAKSCPRGEVHMVDKDFIAVELSNTNAKLNNTNNAQAYLSDA 113


>gi|228914699|ref|ZP_04078308.1| Methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228845018|gb|EEM90060.1| Methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 206

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       +
Sbjct: 1   MEKLVIQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA-----PD 55

Query: 259 VKIVRMSSKEF 269
              +   ++ F
Sbjct: 56  AAFIVDDARYF 66


>gi|228927167|ref|ZP_04090230.1| Methyltransferase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|229091093|ref|ZP_04222316.1| Methyltransferase [Bacillus cereus Rock3-42]
 gi|229121650|ref|ZP_04250875.1| Methyltransferase [Bacillus cereus 95/8201]
 gi|229184317|ref|ZP_04311524.1| Methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228599113|gb|EEK56726.1| Methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228661870|gb|EEL17485.1| Methyltransferase [Bacillus cereus 95/8201]
 gi|228692224|gb|EEL45960.1| Methyltransferase [Bacillus cereus Rock3-42]
 gi|228832493|gb|EEM78067.1| Methyltransferase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 206

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       +
Sbjct: 1   MEKLVLQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA-----PD 55

Query: 259 VKIVRMSSKEF 269
              +   ++ F
Sbjct: 56  AAFIVDDARYF 66


>gi|284029483|ref|YP_003379414.1| putative RNA methylase [Kribbella flavida DSM 17836]
 gi|283808776|gb|ADB30615.1| putative RNA methylase [Kribbella flavida DSM 17836]
          Length = 353

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 13/149 (8%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLE 215
           + T+  L      E L    RT        S    +  +   M+       +     +L+
Sbjct: 160 DGTRALLGLRIGAEPL--HRRTYRQITRPGS---VHPPVAAAMVRLARPLDRA---TVLD 211

Query: 216 LYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
             CG G   +  A    +  VL  +  + +V AA+ N A + +  +      +     A 
Sbjct: 212 PCCGAGTIPIEAASIGRQLSVLGSDRNRDAVGAAQANGAGSSIRWLI---ADAGSLPLAS 268

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                       D        +   P R 
Sbjct: 269 NSVDLAVSNPPWDRQVPAAGVLARRPQRF 297


>gi|281422532|ref|ZP_06253531.1| SAM-dependent methyltransferase [Prevotella copri DSM 18205]
 gi|281403356|gb|EFB34036.1| SAM-dependent methyltransferase [Prevotella copri DSM 18205]
          Length = 247

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV-NN 258
           +L A       +L++  G G  SL++A+ F    V+ +++   +   AR N+ A+   + 
Sbjct: 26  LLGAWAQGGRRILDIGSGTGLISLMMAQRFPEAEVVGIDMDADACGQARENVMASPFRDR 85

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           V+I     ++F        E     D    +  F  I  +PP
Sbjct: 86  VEIECCRLQDFG-GTSEAAEALETADGLKAAGVFDAIVSNPP 126


>gi|189462017|ref|ZP_03010802.1| hypothetical protein BACCOP_02689 [Bacteroides coprocola DSM 17136]
 gi|189431231|gb|EDV00216.1| hypothetical protein BACCOP_02689 [Bacteroides coprocola DSM 17136]
          Length = 280

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 62/174 (35%), Gaps = 41/174 (23%)

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF 231
           V    L +     +   P       +++W+++      G  +L++  G+G   +VL +  
Sbjct: 76  VDFCGLPFEVAPGALI-PRPE-TAELIDWIISDYTDKAGVRILDVGTGSGCIPIVLGKKL 133

Query: 232 D--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
              ++ + ++++ +++ AR N   N V+    + ++  +               D  +  
Sbjct: 134 KQSKITSWDVSEKALDIARRNKLLNQVD----ITLAQVDIF-------------DTALPD 176

Query: 290 YRFKTIFVDPP------RSGLDDATVGM-------------VQAYPHILYISCN 324
                +  +PP      RSG++   +               +  Y  I  + C+
Sbjct: 177 IHVDVLVSNPPYITEKERSGMERNVLDWEPELALFVPDSDPLLFYRRIAEVGCD 230


>gi|138893706|ref|YP_001124159.1| methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196250749|ref|ZP_03149436.1| methyltransferase small [Geobacillus sp. G11MC16]
 gi|134265219|gb|ABO65414.1| Methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196209699|gb|EDY04471.1| methyltransferase small [Geobacillus sp. G11MC16]
          Length = 249

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 21/138 (15%)

Query: 166 YVDERL-TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           Y DERL  +    L   Q  + F+     ++  +L    A     +G +++L  GNG   
Sbjct: 5   YGDERLDYLFNEELRIIQSPSVFS---FSLDAVLLAH-FAYLPIQKGQIVDLCTGNGVIP 60

Query: 225 LVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRL 282
           L+L++     ++ +EI +   + AR +I  N +   ++I+    KE  Q           
Sbjct: 61  LLLSQRTKGTIIGIEIQERLCDMARRSIQYNGLEEQIEIIHGDIKEAPQQ---------- 110

Query: 283 KDIDIHSYRFKTIFVDPP 300
               I   R+  +  +PP
Sbjct: 111 ----IGYSRYDVVTCNPP 124


>gi|154253443|ref|YP_001414267.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157393|gb|ABS64610.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Parvibaculum lavamentivorans DS-1]
          Length = 220

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   M++       G +  +L++ CG G  + VLAR    V+A+E  +    +A   +
Sbjct: 67  PRVFAKMVQLA---EIGPEDLVLDVGCGTGYSTAVLARLAGTVVALECDENLAASAGATL 123

Query: 252 AANHVNNVKIVRMSSKE 268
           +   V+N  ++  +  E
Sbjct: 124 SDLGVDNAAVLPGALTE 140


>gi|254976044|ref|ZP_05272516.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-66c26]
 gi|255093432|ref|ZP_05322910.1| ribosomal protein L11 methyltransferase [Clostridium difficile CIP
           107932]
 gi|255315177|ref|ZP_05356760.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-76w55]
 gi|255517846|ref|ZP_05385522.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-97b34]
 gi|255650962|ref|ZP_05397864.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-37x79]
 gi|260684031|ref|YP_003215316.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           CD196]
 gi|260687691|ref|YP_003218825.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           R20291]
 gi|306520840|ref|ZP_07407187.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-32g58]
 gi|260210194|emb|CBA64402.1| putative ribosomal protein L11 methyltransferase [Clostridium
           difficile CD196]
 gi|260213708|emb|CBE05590.1| putative ribosomal protein L11 methyltransferase [Clostridium
           difficile R20291]
          Length = 315

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L         + ++ CG+G  ++  A+     V+AV++ + +V+ A+ N+  
Sbjct: 163 TTSMCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLE 222

Query: 254 NHVN-NVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N V  +V ++  +  +  +        N + DI
Sbjct: 223 NKVEKSVSVMHGNLTDVIKDKADVIVANIIADI 255


>gi|124809691|ref|XP_001348655.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|23497553|gb|AAN37094.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 587

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSK 267
             ++L+L+   G+F + LA      V  V+ +  +++   +    N+ ++ +  V   ++
Sbjct: 277 DKNVLDLFSYVGSFGITLAYYGAKEVTCVDSSYSAIQNGLHAAQYNNVLDKINFVHGCAR 336

Query: 268 EFTQA 272
            F   
Sbjct: 337 NFLHV 341


>gi|34498739|ref|NP_902954.1| hypothetical protein CV_3284 [Chromobacterium violaceum ATCC 12472]
 gi|34104590|gb|AAQ60948.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 236

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++  W+ A      G  ++L CG+G  +L LA    RV AV+ ++ ++  AR  +AA+ 
Sbjct: 50  ENLAAWLDAGRIA-PGLAIDLGCGHGRNALHLAGKGFRVRAVDFSESAIAWARERVAASG 108

Query: 256 VNNVKIVRMSSKEF 269
              V++++ S  EF
Sbjct: 109 -RPVEVIQASVFEF 121


>gi|56476248|ref|YP_157837.1| ribosomal protein L11 methyltransferase [Aromatoleum aromaticum
           EbN1]
 gi|56312291|emb|CAI06936.1| Ribosomal protein L11 methyltransferase [Aromatoleum aromaticum
           EbN1]
          Length = 301

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+  A +     +L+  CG+G   +   R     VL ++I   +++AA  N A NHV 
Sbjct: 154 LEWLCDAVQPGDS-VLDYGCGSGILGIAAVRLGAGDVLGIDIDDKALDAAHDNAARNHVA 212


>gi|120556652|ref|YP_961003.1| putative methyltransferase [Marinobacter aquaeolei VT8]
 gi|120326501|gb|ABM20816.1| 16S rRNA m(2)G-966 methyltransferase [Marinobacter aquaeolei VT8]
          Length = 211

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 21/115 (18%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G   L  L+R   +   V+      +A R N+     N   +     ++F   
Sbjct: 69  LDLFAGSGALGLEALSRGAAQATLVDHTPALAKALRDNLRLLGTNKGDVACQDVEQFLAK 128

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI-----LYI 321
                              +  +F+DPP R G  +  + ++     +     +Y+
Sbjct: 129 G--------------DGRGYDIVFMDPPFRQGWLERLIPLLDTQQWVKPGGWIYV 169


>gi|262374492|ref|ZP_06067766.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter junii
           SH205]
 gi|262310488|gb|EEY91578.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter junii
           SH205]
          Length = 237

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERVGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  ++       + +     ++  H     +I 
Sbjct: 92  AQQENVKNIEYRQIPVEQLALEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|239980423|ref|ZP_04702947.1| putative methyltransferase [Streptomyces albus J1074]
 gi|291452283|ref|ZP_06591673.1| methyltransferase [Streptomyces albus J1074]
 gi|291355232|gb|EFE82134.1| methyltransferase [Streptomyces albus J1074]
          Length = 252

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +V AA +     +L++ CG G F+L+LA     V+ V+ A+ S++ AR   A    + V
Sbjct: 27  AYVRAAREFGARRVLDIGCGTGVFALLLAARGIEVVGVDPARASLDVAR---AKPGADRV 83

Query: 260 KIVRMSSK 267
           + +   + 
Sbjct: 84  RWICGDAT 91


>gi|255101610|ref|ZP_05330587.1| ribosomal protein L11 methyltransferase [Clostridium difficile
           QCD-63q42]
 gi|255307479|ref|ZP_05351650.1| ribosomal protein L11 methyltransferase [Clostridium difficile ATCC
           43255]
          Length = 315

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L         + ++ CG+G  ++  A+     V+AV++ + +V+ A+ N+  
Sbjct: 163 TTSMCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLE 222

Query: 254 NHVN-NVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N V  +V ++  +  +  +        N + DI
Sbjct: 223 NKVEKSVSVMHGNLTDVIKDKADVIVANIIADI 255


>gi|126700067|ref|YP_001088964.1| ribosomal protein L11 methyltransferase [Clostridium difficile 630]
 gi|115251504|emb|CAJ69337.1| Ribosomal protein L11 methyltransferase (L11 Mtase) [Clostridium
           difficile]
          Length = 315

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L         + ++ CG+G  ++  A+     V+AV++ + +V+ A+ N+  
Sbjct: 163 TTSMCIRELEKYVNKDSKVFDIGCGSGILAIAAAKLGAKEVVAVDLDEVAVKVAKENVLE 222

Query: 254 NHVN-NVKIVRMSSKEFTQAMRREREFNRLKDI 285
           N V  +V ++  +  +  +        N + DI
Sbjct: 223 NKVEKSVSVMHGNLTDVIKDKADVIVANIIADI 255


>gi|134294590|ref|YP_001118325.1| methyltransferase small [Burkholderia vietnamiensis G4]
 gi|134137747|gb|ABO53490.1| methyltransferase small [Burkholderia vietnamiensis G4]
          Length = 392

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 3/120 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH 255
             +E V            ++  G G  + VLA R  + V+A +    ++  AR N+A   
Sbjct: 200 EYVELVARTPLPATSLAFDVGTGTGVLAAVLAARGVEHVVATDQDPRALACARENVARLG 259

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             +   V + + +   A R          +           V  P S +    +  + A+
Sbjct: 260 --HADRVDVVAADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLSGLAAH 317


>gi|325127342|gb|EGC50277.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria meningitidis N1568]
          Length = 273

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 45/232 (19%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           +   +   +  D L  R+   + +       I   R++   R TV    LI R       
Sbjct: 38  EEMPDEVRQRADRLAQRRLNGEPVAY-----ILGVREFYGRRFTVNPSVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E VLA      G + +L  G+G  ++ +A  R    V   +I+ P++E 
Sbjct: 88  ------TEHLVEAVLAR-LPENGRVWDLGTGSGAVAVTVALERPDAFVRTSDISTPALET 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGL 304
           AR N A      V+    S   F   M  E              ++  I  +PP   +G 
Sbjct: 141 ARKNAADLGAR-VEFAHGS--WFDTDMPSE-------------GKWDIIVSNPPYIENGD 184

Query: 305 DDATVGMVQAYPHILY------ISCNPDSLCRDL-SILSTTHTIERLALFDQ 349
              + G ++  P I        +SC   +L +     L+    +     FDQ
Sbjct: 185 KHLSQGDLRFEPQIALTDFSDGLSC-IRTLAQGAPDRLAEGGFLLLEHGFDQ 235


>gi|300711337|ref|YP_003737151.1| putative RNA methylase [Halalkalicoccus jeotgali B3]
 gi|299125020|gb|ADJ15359.1| putative RNA methylase [Halalkalicoccus jeotgali B3]
          Length = 205

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYN 250
           AGI  H++  +      + G +L+L  G G  +L +A R  +RV+ ++    ++E AR N
Sbjct: 31  AGIAAHLV-HIADLRGDLGGTVLDLGTGTGMLALGVALRSPERVIGLDADPAAIETAREN 89

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                       R+        +  +     L                  R G D   + 
Sbjct: 90  AR----------RVDPPRDPDWVLGDGGRPGLCPAGATVLMNPPFGAQRGRRGADRRFLA 139

Query: 311 MVQAYPHILY 320
                  ++Y
Sbjct: 140 SALDVADVVY 149


>gi|150021753|ref|YP_001307107.1| hypothetical protein Tmel_1889 [Thermosipho melanesiensis BI429]
 gi|149794274|gb|ABR31722.1| conserved hypothetical protein 95 [Thermosipho melanesiensis BI429]
          Length = 388

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 214 LELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+ +C  GNF +  L      V  ++ ++ +++        N   N + +  ++      
Sbjct: 215 LDAFCYTGNFGMHMLLYGAKHVTFLDYSQRAIDIVNLIAKENGFKNYETIVGNA------ 268

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                 F+ LK+ D  S  F  + +DPP      
Sbjct: 269 ------FDILKNFDKSSKYFDIVSIDPPSFAKKA 296


>gi|99081590|ref|YP_613744.1| methyltransferase type 12 [Ruegeria sp. TM1040]
 gi|99037870|gb|ABF64482.1| Methyltransferase type 12 [Ruegeria sp. TM1040]
          Length = 215

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  +LE+ CG G+ +L+LA H   +   ++A   +E A    A   + NV      + +
Sbjct: 42  PEDHVLEIGCGTGSTALLLAPHVAHITGTDLAPGMIEIAAEKRAKEGLENVTFKVAETLD 101


>gi|315655506|ref|ZP_07908405.1| methyltransferase (methylase) [Mobiluncus curtisii ATCC 51333]
 gi|315490161|gb|EFU79787.1| methyltransferase (methylase) [Mobiluncus curtisii ATCC 51333]
          Length = 186

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI- 251
           +   M   +L +       +L+L+ G+G   L  L+R     + V+ A  + +  R NI 
Sbjct: 28  VREAMFSHLLCSGFPQGATVLDLFAGSGALGLEALSRGGASAVFVDAAGSAAKVLRANID 87

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A  + + V+++   + +F          + LK  D     F  IF+DPP +        +
Sbjct: 88  ALRYRDRVRVLVKDAAKFV---------SELKPPD----CFDLIFLDPPYALAPYVLCEI 134

Query: 312 VQA 314
           +  
Sbjct: 135 LAG 137


>gi|325105623|ref|YP_004275277.1| Conserved hypothetical protein CHP00095 [Pedobacter saltans DSM
           12145]
 gi|324974471|gb|ADY53455.1| Conserved hypothetical protein CHP00095 [Pedobacter saltans DSM
           12145]
          Length = 395

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 46/101 (45%), Gaps = 11/101 (10%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+ +C +G FSL  L    ++V++V+ +  ++E    NI  N    +  + + S + 
Sbjct: 221 KTVLDSFCYSGGFSLNSLLNGAEKVVSVDSSALAIETLEKNIVINGFEGISHIAIQS-DV 279

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            + +R  +E         +  +F  + +DPP+     + + 
Sbjct: 280 NKQLRVFKE---------NGDKFDVVILDPPKYAPSRSALD 311


>gi|303388946|ref|XP_003072706.1| putative methyltransferase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303301848|gb|ADM11346.1| putative methyltransferase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 363

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 23/174 (13%)

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKI-------CLDRDYVDER 170
           IV  I H  LD+   +    +   +H +  +  +      +          +  D V E 
Sbjct: 112 IVGSIIHLNLDEEQMKYKNVIGQVVHDKTGRTVITKIGQISNEYRSFDLEVIGGDPVLET 171

Query: 171 LTVAGRTLI---YRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLL-ELYCGNGNFSL 225
           +   G  L    YR         N      +  E ++   K   GD++ + +CG G  SL
Sbjct: 172 IHREGDILFCIDYR---------NVYWCSKLQSERMILVKKFQVGDVVCDPFCGVGPVSL 222

Query: 226 VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRRER 277
              +   RV + ++   ++E  R +I  N ++   ++I  + + EF + M    
Sbjct: 223 AALKKGCRVYSNDLNSHAIECLRKSIKINKLDPKKIEIFNLPAAEFLEKMAGRE 276


>gi|257095671|ref|YP_003169312.1| 50S ribosomal protein L11 methyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048195|gb|ACV37383.1| ribosomal protein L11 methyltransferase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 296

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L  +      +L+  CG+G  ++  AR     V+ V+I + +V A+R N   N V+
Sbjct: 155 LEW-LERSVTPGLSVLDYGCGSGILAIASARLGAAEVVGVDIDEQAVIASRSNAERNGVS 213

Query: 258 NVKIVRMSSKEF 269
                + S +E 
Sbjct: 214 --ARFQGSGREL 223


>gi|239982316|ref|ZP_04704840.1| putative methyltransferase [Streptomyces albus J1074]
          Length = 281

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 25/132 (18%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARH 230
             R L  +     F          ++ W + A +    ++  +++L  G+G  +L LA+ 
Sbjct: 75  YFRYLELQVGPGVF--VPRPETESVVGWAIDAVRAMDVVEPLVVDLCSGSGAIALALAQE 132

Query: 231 FDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
             R  V AVE+++ ++   R N+     + V + +  +            F  L ++D  
Sbjct: 133 VPRSTVHAVELSEDALVWTRKNVEG---SRVHLHQGDA------------FGALPELD-- 175

Query: 289 SYRFKTIFVDPP 300
             +   +  +PP
Sbjct: 176 -GQVDLVISNPP 186


>gi|227510689|ref|ZP_03940738.1| methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513705|ref|ZP_03943754.1| methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227083024|gb|EEI18336.1| methyltransferase [Lactobacillus buchneri ATCC 11577]
 gi|227189810|gb|EEI69877.1| methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 202

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 21/121 (17%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVL-AVEIAKPSVEAARYNIAA 253
             +LE V        G++L++  G G   L +A+   DRV+  V++ + ++  A  N  A
Sbjct: 49  RVLLENVDVENIP-DGNILDMGTGYGPIGLAIAKIQPDRVVDMVDVNEIALALAEKNAQA 107

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N ++NV+I   +S            ++ +KD       +  I  +PP          M+ 
Sbjct: 108 NGISNVRIFASNS------------YSNIKD------NYAAIVTNPPVRAGKKVVDDMIT 149

Query: 314 A 314
            
Sbjct: 150 G 150


>gi|218783032|ref|YP_002434350.1| modification methylase, HemK family [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764416|gb|ACL06882.1| modification methylase, HemK family [Desulfatibacillum alkenivorans
           AK-01]
          Length = 289

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 32/145 (22%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELY 217
           I  +RD+    L V    LI R                ++E  L      Q    +L+L 
Sbjct: 78  IVGNRDFWTLELDVNPSVLIPRPE-----------TETLVETALEVLNAAQAPMRVLDLG 126

Query: 218 CGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G+G   L LA  +     +AV+ +  ++E A+ N   +++ NV   + S  E  + + R
Sbjct: 127 TGSGAIILALASEKPEHHYMAVDYSPQALETAKANAQKHNL-NVDFYKGSWFEAVRCLDR 185

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPP 300
                           F  +  +PP
Sbjct: 186 ----------------FDLVVSNPP 194


>gi|242247319|ref|NP_001156225.1| protein arginine n-methyltransferase 1, putative [Acyrthosiphon
           pisum]
 gi|239790933|dbj|BAH71996.1| ACYPI006777 [Acyrthosiphon pisum]
          Length = 380

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 20/104 (19%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           +E L    RTL YR                M              +L++ CG G  S+  
Sbjct: 71  EEMLKDEVRTLTYRNS--------------MYY---NKHLLKGKIVLDIGCGTGILSMFA 113

Query: 228 ARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           A+    +V+ VE +   VE A+  +A NH+++ V I++   +E 
Sbjct: 114 AKAGAAKVIGVECSNI-VEYAKQIVADNHLDHIVTIIKGKVEEI 156


>gi|83645219|ref|YP_433654.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Hahella chejuensis KCTC 2396]
 gi|83633262|gb|ABC29229.1| Methylase of polypeptide chain release factors [Hahella chejuensis
           KCTC 2396]
          Length = 301

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 22/109 (20%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
             +LE  L          +L+L CG+G   +  A  F    V+  +I+  +++ AR N+A
Sbjct: 115 AELLEHELQPWLEQPPLRILDLCCGSGCIGIAAAHVFPEAEVVLADISPLALDVARRNVA 174

Query: 253 ANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +H+ +  K+V     +  Q                    F  I  +PP
Sbjct: 175 RHHLGDRCKVVESDMFDALQG------------------EFDVILTNPP 205


>gi|116629510|ref|YP_814682.1| ribosomal protein L11 methylase [Lactobacillus gasseri ATCC 33323]
 gi|311110846|ref|ZP_07712243.1| ribosomal protein L11 methyltransferase [Lactobacillus gasseri
           MV-22]
 gi|122273552|sp|Q043X8|PRMA_LACGA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|116095092|gb|ABJ60244.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Lactobacillus gasseri ATCC 33323]
 gi|311066000|gb|EFQ46340.1| ribosomal protein L11 methyltransferase [Lactobacillus gasseri
           MV-22]
          Length = 315

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 75/218 (34%), Gaps = 16/218 (7%)

Query: 72  RIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAW 131
            I+       L      E      L   +  K+ ++      + +  V++    + D+ W
Sbjct: 55  DIENLPKDLELTAYFNYENADKKELVKKITDKIAEMKGYGLNTGE--VSISTKEVADEDW 112

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
                +     H   +   L              + D++L      L +    ++ TQ  
Sbjct: 113 NTAWQK---YYHVIDFSRHLAIVPEWED--YHPAFSDQKLIRLDPGLAFGTGGHTTTQ-- 165

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
                 ++   +         +L++  G+G  ++  ++     VL  +I+  +V AA+ N
Sbjct: 166 ------LVLLAMERALVKPMSVLDIGTGSGILAIAASKLGASHVLGTDISDEAVTAAKEN 219

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           IA N VNN+ + + +  +           N L DI + 
Sbjct: 220 IALNDVNNINVRKANLLKDIDDKYDLIVANILADILLE 257


>gi|325280492|ref|YP_004253034.1| hypothetical protein Odosp_1838 [Odoribacter splanchnicus DSM
           20712]
 gi|324312301|gb|ADY32854.1| Conserved hypothetical protein CHP00095 [Odoribacter splanchnicus
           DSM 20712]
          Length = 396

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 20/126 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAA 253
           N H+LE            +L ++C  G FS    R   R V +V+++  ++E A+ N+A 
Sbjct: 214 NRHLLEK-----YAGNKQVLNMFCYTGGFSFYAMRGGARSVHSVDVSTRAIELAKQNVAL 268

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMV 312
           N   + +    + + F             + ++    ++  I +DPP        +   +
Sbjct: 269 NFPGDRRHEAFAEEAF-------------RFLEQSHNKYDLIILDPPAFAKHQNVLNNAI 315

Query: 313 QAYPHI 318
           Q Y  +
Sbjct: 316 QGYKKL 321


>gi|269964201|ref|ZP_06178492.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831050|gb|EEZ85218.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 424

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 190 KEGLKETTGVLHGEEPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 237

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +            ++L  +   G F L  L     RV+  ++++P+++ A++N
Sbjct: 238 RQQAMKYV---------KDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFN 288

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 289 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKFAESKAQLN 340

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 341 GACRGYKDI 349


>gi|254567908|ref|XP_002491064.1| hypothetical protein [Pichia pastoris GS115]
 gi|238030861|emb|CAY68784.1| hypothetical protein PAS_chr2-1_0815 [Pichia pastoris GS115]
 gi|328352410|emb|CCA38809.1| tRNA (mo5U34)-methyltransferase [Pichia pastoris CBS 7435]
          Length = 278

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E +    +G     L++ CG G  +  LAR F   +  +I+   V  A        V+N
Sbjct: 26  IESIFGYHQGDFDKALDVGCGPGEATFHLARKFKNTIGTDISPGMVSQATSLKERRDVSN 85

Query: 259 VKIVRMSSKEF 269
           V   + SS++ 
Sbjct: 86  VSFQQSSSEDL 96


>gi|167644952|ref|YP_001682615.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caulobacter sp. K31]
 gi|167347382|gb|ABZ70117.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Caulobacter sp. K31]
          Length = 285

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 69/208 (33%), Gaps = 45/208 (21%)

Query: 127 LDDAWRECAIRLRD---ALHARKYQIQLIGRANKTKICLDRDY---VDERLTVAGRTLIY 180
           L  AW     RL+D      A   ++ L   A+ T+  +  D    + E         + 
Sbjct: 5   LVKAWTAAKERLKDVKIDQPAIDARLLLEVAADVTRTDIITDPYRVLTETQMATLNDFLE 64

Query: 181 R----------QIENSFT----QPNAGI------NVHMLEWVLAATKGIQG-DLLELYCG 219
           R               F     Q N  +         +++ VL A       ++L+L  G
Sbjct: 65  RRAAREPVSHIIGRKGFWKILLQVNKNVLTPRPETEVIVDEVLKAFPEQMSFNMLDLGVG 124

Query: 220 NGNFSLV-LARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           +G   L  LA     + L +++++ ++  AR N A+  ++              A+ R  
Sbjct: 125 SGTILLAVLAERPAAKGLGIDVSEDALAVARENAASLDLSGR-----------VALLRGD 173

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
             N L D       F  +  +PP     
Sbjct: 174 WTNGLGD-----NGFDLVVSNPPYIATH 196


>gi|332976078|gb|EGK12947.1| UbiE/COQ5 family methyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 185

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             G    +L+  CG G  +  LA H  ++ A++I+   +E A+     + + N+  ++  
Sbjct: 7   YLGDNDIVLDYGCGTGTTACALAHHVKQIHAIDISLKMIEIAKAKAIMSKIENINFLQTD 66


>gi|328950316|ref|YP_004367651.1| Ribosomal protein L11 methyltransferase [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450640|gb|AEB11541.1| Ribosomal protein L11 methyltransferase [Marinithermus
           hydrothermalis DSM 14884]
          Length = 256

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              M    LA        +L+L  G+G  ++  A     VL V++    +  A  N   N
Sbjct: 106 TTRMALEALAREPIHGARVLDLGTGSGILAIAAAMRGAEVLGVDVDASVIPQAEANARRN 165

Query: 255 HVNNVKIVRMSSKEFTQ 271
                +    S +    
Sbjct: 166 QAP-ARFKVGSLEAAEP 181


>gi|305431704|ref|ZP_07400873.1| methyltransferase [Campylobacter coli JV20]
 gi|304445299|gb|EFM37943.1| methyltransferase [Campylobacter coli JV20]
          Length = 210

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNG-NFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N  IN  +++   A        +L++ CG G   +L L++   +V  ++I++  ++ A+ 
Sbjct: 30  NTSINQCIVD--FANNLSPNSRVLDIGCGTGYPIALYLSKQGFQVTGIDISEEMIKQAQK 87

Query: 250 NIAANHVNNVKIVRMS 265
                +++N   +   
Sbjct: 88  ----LNLHNATFLVED 99


>gi|294508850|ref|YP_003572909.1| Conserved hypothetical protein containing RNA methylase domain
           [Salinibacter ruber M8]
 gi|294345179|emb|CBH25957.1| Conserved hypothetical protein containing RNA methylase domain
           [Salinibacter ruber M8]
          Length = 369

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/168 (20%), Positives = 61/168 (36%), Gaps = 14/168 (8%)

Query: 108 DYLTSQSDQAIVTLIYHRLLDDAWREC-------AIRLRDALHAR-KYQIQLIGRANKTK 159
           D +T+   +A+ T    R       E          R   AL AR    + L     + +
Sbjct: 105 DTVTTLDVEAMETADTFRASSVRQGEHDFTSVDVQTRAGGALDARYDASVDLEDYDVEVR 164

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL--AATKGIQGDLLELY 217
           + +  D     +      L  RQ+E    QP A +  ++   +L  A        LL+ +
Sbjct: 165 VDVREDQCLVSVQHTREALSRRQLEG--YQPRAALKANVAYALLRLAHLDAPPNTLLDPF 222

Query: 218 CGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           CG+G   L  A      +    +  + +V  AR N+    +++   +R
Sbjct: 223 CGSGTILLEAADLWADTQCYGSDWNEEAVSGARTNVDLAGLSDRIAIR 270


>gi|258648582|ref|ZP_05736051.1| hydrogenase-4, F subunit [Prevotella tannerae ATCC 51259]
 gi|260851361|gb|EEX71230.1| hydrogenase-4, F subunit [Prevotella tannerae ATCC 51259]
          Length = 394

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 3/126 (2%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAAN--HVN 257
            +L      +  +L ++C  G FS+  L      V++V+ +  +++    N+A N  + +
Sbjct: 213 RLLLQRYSNKRHVLNMFCYTGGFSVYALRGGAQEVVSVDSSAKAIDLTNANVALNYPNCD 272

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           + K     + +F        +   L       ++          + L+   +  ++    
Sbjct: 273 HHKAYAEDAFKFLDKADDAYDLIVLDPPAFAKHKEAVRNALKGYTRLNLQAMRKIKRGGI 332

Query: 318 ILYISC 323
           +   SC
Sbjct: 333 LFTFSC 338


>gi|156938052|ref|YP_001435848.1| SAM-dependent methyltransferase [Ignicoccus hospitalis KIN4/I]
 gi|156567036|gb|ABU82441.1| SAM-dependent methyltransferase [Ignicoccus hospitalis KIN4/I]
          Length = 371

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 14/155 (9%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
            V A         L+ +   G F L  L      V  V+    ++   R N+  N+ +  
Sbjct: 197 RVYAERFSSGSKFLDAFSYTGGFGLHALKAGAREVTFVDEDPWALRVLRENLRLNNFDEG 256

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK------TIFVDPPRSGLDDATVGM 311
            V++VR  + +F     +  +   +  +D  +                  +G     + +
Sbjct: 257 KVRVVREDAWKFFARSIKRGKSFEVGSVDPPALMDDYKDGYVRYVRAYSGAGSIIEVLAV 316

Query: 312 VQAYPHILYISCNPDSLCRDLSI-LSTTHTIERLA 345
           + +       S + ++  R +   L+  + I  L 
Sbjct: 317 LSSCSR----SMDRETFVRAVHQALAPKYRILELR 347


>gi|218533093|ref|YP_002423909.1| methyltransferase type 11 [Methylobacterium chloromethanicum CM4]
 gi|218525396|gb|ACK85981.1| Methyltransferase type 11 [Methylobacterium chloromethanicum CM4]
          Length = 259

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF--- 269
           +L+L CG G+ +  +A     V A+++++  ++A         + NV   + S +     
Sbjct: 48  VLDLGCGGGHVTYAVAPQVRSVTALDLSQSMLDAVAAEAQRRGLANVATRQASVEALPFA 107

Query: 270 ---TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                 +      +   D+         +     R GL D  
Sbjct: 108 DASFDGVVSRYSAHHWGDVSAALREAHRVLAPGGRFGLVDVV 149


>gi|57168148|ref|ZP_00367287.1| methyltransferase Atu0936 , putative [Campylobacter coli RM2228]
 gi|57020522|gb|EAL57191.1| methyltransferase Atu0936 , putative [Campylobacter coli RM2228]
          Length = 202

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNG-NFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N  IN  +++   A        +L++ CG G   +L L++   +V  ++I++  ++ A+ 
Sbjct: 22  NTSINQCIVD--FANNLSPNSRVLDIGCGTGYPIALYLSKQGFQVTGIDISEEMIKQAQK 79

Query: 250 NIAANHVNNVKIVRMS 265
                +++N   +   
Sbjct: 80  ----LNLHNATFLVED 91


>gi|253583730|ref|ZP_04860928.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium
           varium ATCC 27725]
 gi|251834302|gb|EES62865.1| ribosomal RNA small subunit methyltransferase C [Fusobacterium
           varium ATCC 27725]
          Length = 225

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 210 QGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
           +G +L++  GNG   ++L      + +  ++I + +VE A+ N+  N++ +N++IV    
Sbjct: 41  KGKILDIGTGNGIIPVLLVSKEKGEDITGIDIQEENVELAKRNVQLNNLNDNIEIVHGDV 100

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP-PRSGLDDATVGMVQAYPHIL 319
           KE++     +   +    +++   +   +      R  +      +VQ+   +L
Sbjct: 101 KEYSMGNSFDYIVSNPPYMEVDGKKQNILSCKSIARHEIKLNLSQLVQSAKKLL 154


>gi|209966251|ref|YP_002299166.1| SAM-dependent methyltransferase, putative [Rhodospirillum centenum
           SW]
 gi|209959717|gb|ACJ00354.1| SAM-dependent methyltransferase, putative [Rhodospirillum centenum
           SW]
          Length = 426

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 12/98 (12%)

Query: 214 LELYCGNGNFS-LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++ Y   G F  L  AR    V  V+ ++ +++ A    AAN   +    R+ +      
Sbjct: 256 IDFYTYTGGFGVLAAARGAAHVTLVDRSQAALDIALKAAAANGCAD----RVEA------ 305

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            R+   F+ L+ +     R++ +  DPP        + 
Sbjct: 306 -RKADAFHELEKLVAEGQRWEVVICDPPAFVKSRKDLA 342


>gi|194900246|ref|XP_001979668.1| GG22804 [Drosophila erecta]
 gi|190651371|gb|EDV48626.1| GG22804 [Drosophila erecta]
          Length = 608

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 21/126 (16%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           R    S+               LA        +L+ +CG G  ++  A    RV+AV+I 
Sbjct: 417 RLDRESWFSVTPEKIAKQTARRLACDV-----ILDAFCGCGGNAIQFANTCGRVIAVDID 471

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +  A++N     V + ++ +     +F    +                R   +F+ P
Sbjct: 472 AEKLAMAKHNAGIYGVAHKIEFINADFLQFAATTK---------------LRPNVVFLSP 516

Query: 300 PRSGLD 305
           P  G D
Sbjct: 517 PWGGPD 522


>gi|146283595|ref|YP_001173748.1| ribosomal protein L11 methyltransferase [Pseudomonas stutzeri
           A1501]
 gi|145571800|gb|ABP80906.1| ribosomal protein L11 methyltransferase [Pseudomonas stutzeri
           A1501]
          Length = 320

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L A       LL+  CG+G  ++  L     + +  +I   ++EA+R N   N + 
Sbjct: 175 LEW-LDAQTLDDRSLLDFGCGSGILAIAGLLLGARQAVGTDIDPQALEASRDNAERNGIA 233

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             +      ++  Q        N L    +      T  V P
Sbjct: 234 PERFTLYLPEQLPQEPADVVVANILAGPLVSLAPQITALVKP 275


>gi|254253033|ref|ZP_04946351.1| Protein-L-isoaspartate carboxylmethyltransferase [Burkholderia
           dolosa AUO158]
 gi|124895642|gb|EAY69522.1| Protein-L-isoaspartate carboxylmethyltransferase [Burkholderia
           dolosa AUO158]
          Length = 217

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++L +  G+G  + +LA     V AVEI     + A  N+
Sbjct: 63  PRVEARVLQELAVKKHE---NVLLIGAGSGYLTALLAHRAQHVTAVEIDPAVAKFAEENL 119

Query: 252 AANHVNNVKIVRMS 265
             N V N ++V   
Sbjct: 120 RNNGVTNAEVVLGD 133


>gi|118619168|ref|YP_907500.1| modification methylase HemK [Mycobacterium ulcerans Agy99]
 gi|118571278|gb|ABL06029.1| modification methylase HemK [Mycobacterium ulcerans Agy99]
          Length = 282

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 148 QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK 207
           Q Q +  A   ++ L   ++   +      L  +     F          +LEW  A   
Sbjct: 56  QYQDMVTARSRRVPLQ--HLIGTVQFGPVEL--QVGPGVF--VPRPETEAVLEWAGAQQL 109

Query: 208 GIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYN 250
                +++L  G+G  ++ LA      R+L V+ +  ++E A  N
Sbjct: 110 SEDPVIVDLCTGSGALAVALANRWPTARILGVDDSAAALEYAHRN 154


>gi|76157650|gb|AAX28511.2| SJCHGC08400 protein [Schistosoma japonicum]
          Length = 229

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 185 NSFTQPNAGI----NVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
           NS       +        +  +   A+ K I   +L+++CG G+ ++  A    RV+A+E
Sbjct: 112 NSLFSATPEVIAAHQAKRIYRIFSPASQKKINHTVLDIFCGTGSNAIQFALRGFRVIAIE 171

Query: 239 IAKPSVEAARYNIAANHVNN-VKIVRMS 265
                +  A +N     V + ++ V   
Sbjct: 172 SDPIRISMAAHNSEIYGVRHLIEFVCED 199


>gi|75910103|ref|YP_324399.1| Mg-protoporphyrin IX methyl transferase [Anabaena variabilis ATCC
           29413]
 gi|75703828|gb|ABA23504.1| Magnesium protoporphyrin O-methyltransferase [Anabaena variabilis
           ATCC 29413]
          Length = 228

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 191 NAGINVH--MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           N        ++ W+       +  + +  CG G+ S+ LA    +V A +I++  VE  +
Sbjct: 40  NGHQQTVDSVIGWLKNDGNLAELSICDAGCGVGSLSIPLATEGAKVYASDISEKMVEEGK 99

Query: 249 YNI--AANHVNNVKIVRMSSKEFT 270
                   +  N        +  +
Sbjct: 100 QRALETLGNAENPTFAVQDLESLS 123


>gi|72162817|ref|YP_290474.1| modification methylase HemK [Thermobifida fusca YX]
 gi|71916549|gb|AAZ56451.1| modification methylase HemK [Thermobifida fusca YX]
          Length = 285

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 21/139 (15%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLA---ATKGIQGDLLELYCGNGNFSLVLARH 230
             R L        F  P       M+ W +    A       +++L  G+G  ++ +A+ 
Sbjct: 75  YFRYLELEVGPGVFI-PRPE-TEMMVSWAIDTLRAMDVADPLVVDLGTGSGAIAISIAQE 132

Query: 231 F--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               RV AVE+   ++  A+ NIA + +   + +     +    +              +
Sbjct: 133 VPRSRVHAVEVDATALSWAKRNIARSGLG--ERITAHHADMRTCLPE------------Y 178

Query: 289 SYRFKTIFVDPPRSGLDDA 307
             R   +  +PP   LD A
Sbjct: 179 HGRVDLVITNPPYVPLDSA 197


>gi|15840750|ref|NP_335787.1| N-methylase PapM [Mycobacterium tuberculosis CDC1551]
 gi|13880942|gb|AAK45601.1| N-methylase PapM [Mycobacterium tuberculosis CDC1551]
 gi|323720257|gb|EGB29356.1| hypothetical protein TMMG_01996 [Mycobacterium tuberculosis
           CDC1551A]
          Length = 304

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           TV+   ++       F          +L W  A +   +  +++   G+G  ++ LA+H 
Sbjct: 74  TVSFGPVVLHVGPGVF--VPRPETEAILAWATAQSLPARPLIVDACTGSGALAVALAQHR 131

Query: 232 ------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R++ ++ +  +++ AR N A      V++VR      T  +  E +      +
Sbjct: 132 ANLGLKARIIGIDDSDCALDYARRNAAG---TPVELVRADVT--TPCLLPELDGQVDLMV 186

Query: 286 DIHSYRFKTIFVDP 299
               Y      ++P
Sbjct: 187 SNPPYIPDAAVLEP 200


>gi|54022083|ref|YP_116325.1| hypothetical protein nfa1190 [Nocardia farcinica IFM 10152]
 gi|54013591|dbj|BAD54961.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 272

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            G    +L++  G G  SL  AR    V A++ ++  V        A  ++N++     
Sbjct: 40  PGPYARVLDVAAGPGTLSLPAARQVAEVAAIDFSEEMVRLLTARARAEGIDNIRATVGD 98


>gi|39934117|ref|NP_946393.1| methyltransferase small [Rhodopseudomonas palustris CGA009]
 gi|39647965|emb|CAE26485.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 259

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 6/120 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHV--- 256
             +        ++E   G G   L +AR  + +  + VEI       A  N   N +   
Sbjct: 41  AASTRAKAGDRVVEFGSGVGAAGLAVARRVEGIDPVLVEIDPNLAALACDNARLNGLVAE 100

Query: 257 NNVKIVRMSSKEFTQAMRREREFN-RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                V   ++ F  A       +  L +   H         DP R     AT   ++A+
Sbjct: 101 TVCLDVTGPAEAFAAAGLGPDTADAVLMNPPFHDAARHRGSPDPARQSAHLATPTTLEAW 160


>gi|17230693|ref|NP_487241.1| Mg-protoporphyrin IX methyl transferase [Nostoc sp. PCC 7120]
 gi|17132296|dbj|BAB74900.1| Mg-protoporphyrin IX methyl transferase [Nostoc sp. PCC 7120]
          Length = 228

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 191 NAGINVH--MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           N        ++ W+       +  + +  CG G+ S+ LA    +V A +I++  VE  +
Sbjct: 40  NGHQQTVDSVIGWLKNDGNLAELSICDAGCGVGSLSIPLATEGAKVYASDISEKMVEEGK 99

Query: 249 YNI--AANHVNNVKIVRMSSKEFT 270
                   +  N        +  +
Sbjct: 100 QRALETLGNAENPTFAVQDLESLS 123


>gi|328473619|gb|EGF44454.1| ribosomal RNA large subunit methyltransferase I [Vibrio
           parahaemolyticus 10329]
          Length = 397

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 204 AATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A       ++L  +   G F L  L     RV+  ++++P+++ A+YN   N        
Sbjct: 214 AMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKYNAELNE------- 266

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
                +          F  L++      +F  + +DPP+     A + G  + Y  I
Sbjct: 267 -FDISKKRAVFLNADVFKLLREYRDQGTQFDVVIMDPPKFAESKAQLNGACRGYKDI 322


>gi|281348316|gb|EFB23900.1| hypothetical protein PANDA_019352 [Ailuropoda melanoleuca]
          Length = 441

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 62/194 (31%), Gaps = 15/194 (7%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    +   A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 101 CLEVSRWVEGRGVTWSAELEAD--LPRSWQRHGDLLLLSEDCFQAKQWKNLEPELWEAVA 158

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G        L   +        G    +       SF      
Sbjct: 159 SALGVHRVAKRGRVSPDGTRTPAVTLLLGAHGWVEHVDNGIRYEFDVTRCMFSF------ 212

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 213 --GNITEKLRVASLPCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRKN 270

Query: 251 IAANHVNNVKIVRM 264
           +  N V +   +  
Sbjct: 271 LDINGVADRCQIHF 284


>gi|148240108|ref|YP_001225495.1| menaquinone biosynthesis methyltransferase ubiE [Synechococcus sp.
           WH 7803]
 gi|147848647|emb|CAK24198.1| Menaquinone biosynthesis methyltransferase ubiE [Synechococcus sp.
           WH 7803]
          Length = 233

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 214 LELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF- 269
           L+L CG G+ +L LAR      +V+ V+ A+  +  AR   A      +   +  +    
Sbjct: 52  LDLCCGTGDLALALARRVRPGGQVVGVDTAEAPLALARQRAAREPWLTLAFQQGDALALN 111

Query: 270 -----TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                   +        L D        K +     R+GL
Sbjct: 112 AETASVDGVVMAYGLRNLADPAAGLQEIKRVLRPGGRAGL 151


>gi|94969986|ref|YP_592034.1| methyltransferase type 11 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94552036|gb|ABF41960.1| Methyltransferase type 11 [Candidatus Koribacter versatilis
           Ellin345]
          Length = 273

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 14/128 (10%)

Query: 212 DLLELYCGNGNFSLVLA----RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G F   LA        RV+ V++    +  AR N      +NV+  +   +
Sbjct: 68  TVLDLGSGAG-FDAFLALSRVGTTGRVIGVDMTDDMLALARQNAEKRGSDNVEFRKGFIE 126

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTI--FVDPPRSGLDDATVGMVQAYPHILYISCNP 325
                            I++ S +           + G   A   +V   P        P
Sbjct: 127 ALPVESGTVDYVISNCVINLSSDKPAVFREIARVLKPGGHFAVSDIVLLKPL-------P 179

Query: 326 DSLCRDLS 333
           D+L +D+S
Sbjct: 180 DALAKDIS 187


>gi|56418563|ref|YP_145881.1| hypothetical protein GK0028 [Geobacillus kaustophilus HTA426]
 gi|56378405|dbj|BAD74313.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 248

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 21/138 (15%)

Query: 166 YVDERL-TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           Y DERL  +    L   Q  + F+     ++  +L    A     +G +++L  GNG   
Sbjct: 4   YEDERLDYLFNEELRIIQSPSVFS---FSLDAVLLAH-FAYMPIQKGQIVDLCTGNGVIP 59

Query: 225 LVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRL 282
           L+L+R     ++ +EI +   + AR ++  N +   ++I+    KE  Q           
Sbjct: 60  LLLSRRTKGTIIGIEIQERLCDMARRSVQYNGLEGQIEIIHGDIKEAPQR---------- 109

Query: 283 KDIDIHSYRFKTIFVDPP 300
               I   R+  +  +PP
Sbjct: 110 ----IGYSRYDVVTCNPP 123


>gi|34557502|ref|NP_907317.1| hypothetical protein WS1127 [Wolinella succinogenes DSM 1740]
 gi|34483219|emb|CAE10217.1| ORF2 [Wolinella succinogenes]
          Length = 267

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L++ CG G F+L  A       A + +   +E   +N +   V N+    +  ++
Sbjct: 64  TILDVGCGPGTFALRFAPKVKHAYAFDFSPKMLEVLHHNASERGVENLTSFCIDLEK 120


>gi|332993698|gb|AEF03753.1| peptide release factor-glutamine N5-methyltransferase [Alteromonas
           sp. SN2]
          Length = 288

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 19/101 (18%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           + +L  G G  +L LA       +  V++   +V+ A  N A N + N +          
Sbjct: 122 ICDLGTGTGAIALALASELPTANITGVDLLHEAVQLATSNAALNSITNAQF--------- 172

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
              ++   F+ L +      +F  I  +PP   +    +  
Sbjct: 173 ---KQSSWFDNLAN-----EKFHVIVSNPPYIEISSPFLQQ 205


>gi|302841643|ref|XP_002952366.1| hypothetical protein VOLCADRAFT_105494 [Volvox carteri f.
           nagariensis]
 gi|300262302|gb|EFJ46509.1| hypothetical protein VOLCADRAFT_105494 [Volvox carteri f.
           nagariensis]
          Length = 424

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFS 224
           Y DE L        ++Q +  F           ++ +L  +       +L++ CG G  S
Sbjct: 146 YSDEELARGYLKKDFKQAKFDF-----------VDEMLKFSGAQDPKKILDVGCGFGGTS 194

Query: 225 LVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             LA+ F    V  + ++   V           VNNV+   M +
Sbjct: 195 RHLAKKFKEASVTGITLSPKQVARGTELAQQQGVNNVQFQVMDA 238


>gi|228933403|ref|ZP_04096257.1| Methyltransferase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228945716|ref|ZP_04108063.1| Methyltransferase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228813937|gb|EEM60211.1| Methyltransferase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228826267|gb|EEM72046.1| Methyltransferase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 206

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       +
Sbjct: 1   MEKLVIQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA-----PD 55

Query: 259 VKIVRMSSKEF 269
              +   ++ F
Sbjct: 56  AAFIVDDARYF 66


>gi|182436334|ref|YP_001824053.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178464850|dbj|BAG19370.1| putative methyltransferase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 361

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D+L++  G G+   +LAR F   R   V++++  + AAR       + N +     +   
Sbjct: 182 DVLDVGTGQGHAVNLLARAFPAGRFTGVDMSRSGIAAARDEAERLGLPNARFEVADAAGV 241

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIF 296
           T        F+ + D+   +     + 
Sbjct: 242 TGGYDLVTAFDVIHDLARPAETLAAVA 268


>gi|167462201|ref|ZP_02327290.1| Predicted SAM-dependent methyltransferase [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322383642|ref|ZP_08057393.1| AdoMet-dependent methyltransferase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151854|gb|EFX44797.1| AdoMet-dependent methyltransferase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 454

 Score = 46.5 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NN 258
            ++         +LE +   G+F+L        +V  ++I++ ++++AR N+  N   + 
Sbjct: 245 KIVQFPYWDGATVLECFSHTGSFTLNACKYGAKKVTCLDISEHAIQSARTNVGLNGFEDR 304

Query: 259 VKIVRMSSKEFT--------QAMRREREFNRLKDIDIH---SYRFKTIFVDPPRSGLDDA 307
           V+ V   + ++         Q   R     R  D  +       +  + +DPP       
Sbjct: 305 VEFVVADAFQYLREQVHGLDQRKARAEASERKVDTSVPLSGGRTWDVVILDPPAFAKTKG 364

Query: 308 TVG 310
            V 
Sbjct: 365 AVE 367


>gi|315932059|gb|EFV11012.1| hypothetical protein CSU_0829 [Campylobacter jejuni subsp. jejuni
           327]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 32/63 (50%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA     +LA++ A   +E  + +    ++NN+K    S + 
Sbjct: 37  QNKSIIDIGCGTGVWTLHLANEAKEILALDSANAMLEILQEDAKKLNLNNIKCENFSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WMQ 99


>gi|315453660|ref|YP_004073930.1| putative ribosomal protein methyltransferase [Helicobacter felis
           ATCC 49179]
 gi|315132712|emb|CBY83340.1| Putative ribosomal protein methyltransferase [Helicobacter felis
           ATCC 49179]
          Length = 303

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 197 HMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            M+  +L+    ++G L L++ CG+G  SL LA+    V A +    ++  +  N A N 
Sbjct: 152 AMVLEMLSLLPHLKGKLALDVGCGSGILSLALAKLGATVHACDTDMLAITESTKNFAQNG 211

Query: 256 VNNVKIVRMSSKEFTQ 271
           +   +I   S ++  +
Sbjct: 212 LALDRIWHGSMEQILK 227


>gi|254786508|ref|YP_003073937.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Teredinibacter turnerae T7901]
 gi|237684513|gb|ACR11777.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Teredinibacter turnerae T7901]
          Length = 305

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 21/223 (9%)

Query: 86  LMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHAR 145
           + ++          +RAKL+      +  D+  V +++   L   W    +     L   
Sbjct: 10  ITVKDWIRWGSSRFVRAKLYFGHGTDNAWDECAVLVLW--ALAQPWERLELIYDTRLTVD 67

Query: 146 KYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAA 205
           + +        + K  +   Y+          L +   EN    P + I   +L  +   
Sbjct: 68  EKKRVFHAIGRRIKEKVPAAYITGE--AIFGGLRFEVNENVLV-PRSPIAELLLNGMHPW 124

Query: 206 TKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
            +     +L+L  G+G   ++ A       V   +I+  ++  A  NI  + +  V  V 
Sbjct: 125 FQEDPASVLDLCTGSGCIGILAASVFQGSEVDISDISASALAVAARNIRNHEL--VDRVT 182

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
               +   A                  ++  I  +PP     D
Sbjct: 183 AIESDLFNA------------PHFIGRKYDLILSNPPYVDAHD 213


>gi|261417528|ref|YP_003251210.1| methyltransferase small [Geobacillus sp. Y412MC61]
 gi|297528403|ref|YP_003669678.1| methyltransferase small [Geobacillus sp. C56-T3]
 gi|319765185|ref|YP_004130686.1| methyltransferase small [Geobacillus sp. Y412MC52]
 gi|261373985|gb|ACX76728.1| methyltransferase small [Geobacillus sp. Y412MC61]
 gi|297251655|gb|ADI25101.1| methyltransferase small [Geobacillus sp. C56-T3]
 gi|317110051|gb|ADU92543.1| methyltransferase small [Geobacillus sp. Y412MC52]
          Length = 249

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 21/138 (15%)

Query: 166 YVDERL-TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           Y DERL  +    L   Q  + F+     ++  +L    A     +G +++L  GNG   
Sbjct: 5   YEDERLDYLFNEELRIIQSPSVFS---FSLDAVLLAH-FAYMPIQKGQIVDLCTGNGVIP 60

Query: 225 LVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRL 282
           L+L+R     ++ +EI +   + AR ++  N +   ++I+    KE  Q           
Sbjct: 61  LLLSRRTKGTIIGIEIQERLCDMARRSVQYNGLEGQIEIIHGDIKEAPQR---------- 110

Query: 283 KDIDIHSYRFKTIFVDPP 300
               I   R+  +  +PP
Sbjct: 111 ----IGYSRYDVVTCNPP 124


>gi|169631872|ref|YP_001705521.1| hypothetical protein MAB_4799c [Mycobacterium abscessus ATCC 19977]
 gi|169243839|emb|CAM64867.1| Conserved hypothetical protein (methyltransferase?) [Mycobacterium
           abscessus]
          Length = 219

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L      +  +L+  CG G+ SL LA H  +V+ ++++  ++E A+       ++    
Sbjct: 31  ALHRQGRFESPILDAGCGIGSTSLALAGHGYQVVGLDLSSGAIEKAKKAAEPLALD---- 86

Query: 262 VRMSSKEFTQAMRREREFNRLKD 284
           V   + + T  +     FN + D
Sbjct: 87  VVFDTADLTSDIGYNDHFNTVID 109


>gi|168004173|ref|XP_001754786.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693890|gb|EDQ80240.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 493

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 77/211 (36%), Gaps = 19/211 (9%)

Query: 78  PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137
           PG  L+   +        ++ +L+  L     +T+ +    V  I H  L +        
Sbjct: 186 PGCELVRCELTLTYDYWPMDEILKEVLP--PGMTTPTAFETVGHIAHLNLRNEHIPYRHA 243

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDE-RLTVAGRTLIYRQIEN--SF------- 187
           +   +  +  + ++    NKT +  ++    +  L     +LI   +E+  SF       
Sbjct: 244 IAQIVLEKN-KPRIRTVVNKTDVIHNKYRTMQLELLAGNSSLITTVVEHGLSFRLDLASV 302

Query: 188 -TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
               N+ +        L  T      + +++ G G  ++V ++    V A ++   +   
Sbjct: 303 YW--NSRLATE--RQRLIDTFNENDIVCDMFAGVGPIAIVASKKVKFVYANDLNPAATTY 358

Query: 247 ARYNIAANHVNN-VKIVRMSSKEFTQAMRRE 276
             +N+  N +   V++    +++F + +   
Sbjct: 359 MHHNLRLNKLAYKVEVSNDDARQFVRNLLAR 389


>gi|2660539|emb|CAA05101.1| hypothetical protein [Helicobacter felis]
          Length = 166

 Score = 46.2 bits (108), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 197 HMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            M+  +L+    ++G L L++ CG+G  SL LA+    V A +    ++  +  N A N 
Sbjct: 15  AMVLEMLSLLPHLKGKLALDVGCGSGILSLALAKLGATVHACDTDMLAITESTKNFAQNG 74

Query: 256 VNNVKIVRMSSKEFTQ 271
           +   +I   S ++  +
Sbjct: 75  LALDRIWHGSMEQILK 90


>gi|171319142|ref|ZP_02908263.1| Methyltransferase type 11 [Burkholderia ambifaria MEX-5]
 gi|171095662|gb|EDT40621.1| Methyltransferase type 11 [Burkholderia ambifaria MEX-5]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +     A      G +L+L CG G+ S  +A H   V+A ++A P +           + 
Sbjct: 30  LQALADAVRATSDGAVLDLGCGAGHASFAVAPHVRDVVAYDLAAPMLATVDAAARERGLA 89

Query: 258 NVKIVRMSSKEF 269
           N++  +  ++  
Sbjct: 90  NIRTQQGPAERL 101


>gi|134046378|ref|YP_001097863.1| methyltransferase [Methanococcus maripaludis C5]
 gi|132664003|gb|ABO35649.1| methyltransferase [Methanococcus maripaludis C5]
          Length = 342

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 21/110 (19%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++++CG G +S+  A +  ++ +++I    +E  + NI  N+  N              
Sbjct: 204 VVDMFCGVGPYSIACA-NAKKIYSIDINPDGIELLKQNIVLNNFEN-------------- 248

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYPHILY 320
               +    L+D+     +   + ++ P+   +  D  + +V+    I Y
Sbjct: 249 ----KIVPILEDVRNVDVKGTRVIMNLPKYAHEFVDKALEIVEEGGIIHY 294


>gi|85707983|ref|ZP_01039049.1| SAM-dependent methyltransferase [Erythrobacter sp. NAP1]
 gi|85689517|gb|EAQ29520.1| SAM-dependent methyltransferase [Erythrobacter sp. NAP1]
          Length = 295

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)

Query: 200 EWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+ A   G    + L ++   G  SL L+ H  RV  V+ +K SV  AR N A + + +
Sbjct: 112 DWMRAQLAGRTDAETLNMFGYTGVGSLALSDH-GRVTHVDASKKSVAQARDNAALSGMED 170

Query: 259 --VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             ++ +   + +FT    R               R+  I +DPP+ G    
Sbjct: 171 RPIRWLVDDAAKFTAREVRRE------------RRYDGIILDPPKFGRGPK 209


>gi|313667027|gb|ADR72966.1| SAM-dependent methyltransferase [Streptomyces sp. OH-4156]
          Length = 245

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++ WV +        +L+L CG G  S  LA    RV+AV+ ++PS++            
Sbjct: 28  LVAWVSSHRPLDGRTVLDLGCGTGVSSFALAEAGARVVAVDASRPSLDMLE---KKRLDR 84

Query: 258 NVKIVRMSSKEFT 270
           +V+ V    ++ T
Sbjct: 85  DVEAVEGDFRDLT 97


>gi|229155694|ref|ZP_04283800.1| Methyltransferase [Bacillus cereus ATCC 4342]
 gi|228627680|gb|EEK84401.1| Methyltransferase [Bacillus cereus ATCC 4342]
          Length = 206

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       +
Sbjct: 1   MEKLVLQYAPPHSHILDLCCGTGHLTKKLIDNHFVVTGIDGSAQMIEYARQNA-----PD 55

Query: 259 VKIVRMSSKEF 269
              +   ++ F
Sbjct: 56  AAFIVDDARYF 66


>gi|254426996|ref|ZP_05040703.1| methyltransferase, HemK family [Alcanivorax sp. DG881]
 gi|196193165|gb|EDX88124.1| methyltransferase, HemK family [Alcanivorax sp. DG881]
          Length = 309

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 19/116 (16%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           YVDER+ +    L    IE SFT            WV          +L+L  G+G  ++
Sbjct: 106 YVDERVLIPRSPLA-ELIEQSFT-----------PWV---DPERVHRVLDLCTGSGCIAI 150

Query: 226 VLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
             A  F+   V   +I+  ++     NI  + +   + VR    +   A+    + 
Sbjct: 151 ACAYAFEHAQVDGSDISAEALAVCEENIQRHGL--AEQVRALQSDGLAAVDGPYDL 204


>gi|149174662|ref|ZP_01853287.1| hemK protein [Planctomyces maris DSM 8797]
 gi|148846356|gb|EDL60694.1| hemK protein [Planctomyces maris DSM 8797]
          Length = 309

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 19/112 (16%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
                 ++E V  A K     +L+L  G+G  ++  A +    +  A +I++P++  A+ 
Sbjct: 117 PDTETLVIELVDEAQKLTNPFILDLCTGSGCIAISAAANCHNAKFQATDISEPALAIAQK 176

Query: 250 NIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N A+N ++N ++ +     E                       F  I  +PP
Sbjct: 177 NAASNELSNQIQFLLSDCFEQIP----------------PGTLFDIIVSNPP 212


>gi|167040700|ref|YP_001663685.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X514]
 gi|300914741|ref|ZP_07132057.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X561]
 gi|307724025|ref|YP_003903776.1| 50S ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X513]
 gi|226710125|sp|B0K3X8|PRMA_THEPX RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166854940|gb|ABY93349.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X514]
 gi|300889676|gb|EFK84822.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X561]
 gi|307581086|gb|ADN54485.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter sp.
           X513]
          Length = 308

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L      +  + ++ CG+G  S+  ++     V A +I + SVE AR N+  
Sbjct: 159 TTKMCLEFLEDIVMPESIVFDVGCGSGILSITSSKLGAKEVYAADIDEVSVEVARQNVEL 218

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           N++ NVK+ +              EF    DI + +     I 
Sbjct: 219 NNLQNVKVFKSDL---------LGEFRGKADIIVANIIADVII 252


>gi|114330835|ref|YP_747057.1| modification methylase, HemK family protein [Nitrosomonas eutropha
           C91]
 gi|114307849|gb|ABI59092.1| [protein release factor]-glutamine N5-methyltransferase
           [Nitrosomonas eutropha C91]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 22/132 (16%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNI 251
              ++E  L+     +  ++L+L  G+G  ++ +ARH     V AV+++  ++  AR N 
Sbjct: 107 TELLVEMALSKIPPDRCCNILDLGTGSGAIAITIARHRPDIYVTAVDLSPLALAVARRNA 166

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATV 309
               V NV  ++                         S +F  I  +PP    G      
Sbjct: 167 KRCSVENVVFIKAD-----------------WFSGFISEKFDVIVANPPYIVEGDPHLEA 209

Query: 310 GMVQAYPHILYI 321
             ++  P I  +
Sbjct: 210 DGLRFEPTIALV 221


>gi|30262853|ref|NP_845230.1| UbiE/COQ5 family methlytransferase [Bacillus anthracis str. Ames]
 gi|47528184|ref|YP_019533.1| UbiE/COQ5 family methlytransferase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185701|ref|YP_028953.1| UbiE/COQ5 family methlytransferase [Bacillus anthracis str. Sterne]
 gi|65320176|ref|ZP_00393135.1| COG0500: SAM-dependent methyltransferases [Bacillus anthracis str.
           A2012]
 gi|227814301|ref|YP_002814310.1| methyltransferase, UbiE/COQ5 family [Bacillus anthracis str. CDC
           684]
 gi|254685448|ref|ZP_05149308.1| methyltransferase, UbiE/COQ5 family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254722857|ref|ZP_05184645.1| methyltransferase, UbiE/COQ5 family protein [Bacillus anthracis
           str. A1055]
 gi|254737906|ref|ZP_05195609.1| methyltransferase, UbiE/COQ5 family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254742921|ref|ZP_05200606.1| methyltransferase, UbiE/COQ5 family protein [Bacillus anthracis
           str. Kruger B]
 gi|254752220|ref|ZP_05204257.1| methyltransferase, UbiE/COQ5 family protein [Bacillus anthracis
           str. Vollum]
 gi|254760737|ref|ZP_05212761.1| methyltransferase, UbiE/COQ5 family protein [Bacillus anthracis
           str. Australia 94]
 gi|30257486|gb|AAP26716.1| methyltransferase, UbiE/COQ5 family [Bacillus anthracis str. Ames]
 gi|47503332|gb|AAT32008.1| methyltransferase, UbiE/COQ5 family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179628|gb|AAT55004.1| methlytransferase, UbiE/COQ5 family [Bacillus anthracis str.
           Sterne]
 gi|227005462|gb|ACP15205.1| methyltransferase, UbiE/COQ5 family [Bacillus anthracis str. CDC
           684]
          Length = 258

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFKEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|307825656|ref|ZP_07655873.1| protein-L-isoaspartate O-methyltransferase [Methylobacter
           tundripaludum SV96]
 gi|307733233|gb|EFO04093.1| protein-L-isoaspartate O-methyltransferase [Methylobacter
           tundripaludum SV96]
          Length = 230

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 156 NKTKICLDRDYVDERLTVAGRTL-IYRQIENSFT--------------QPNAGINVHMLE 200
           N T+  + +D +D+R+  A + +  ++ +   F               Q  +    +M+ 
Sbjct: 16  NLTRHLIGKDALDDRVMAAIKQVPRHKFLPADFRFLAYDNGPAPIGSGQTIS--QPYMVA 73

Query: 201 WVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +         D +LE+  G+G  + +L++   +V ++EI +     AR  +     NNV
Sbjct: 74  LMTDLLNTQPTDTVLEIGTGSGYQAAILSKLVKQVYSLEIIEELSTKARRRLEKLGYNNV 133

Query: 260 KIVRMS 265
            +    
Sbjct: 134 TVYTGD 139


>gi|282865942|ref|ZP_06274991.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
 gi|282559266|gb|EFB64819.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
          Length = 245

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            G  L+L CG G  SL LA     V AV+++  +V  A         + ++     +
Sbjct: 67  PGRALDLGCGPGRNSLYLASLGFTVDAVDLSPGAVAWAEERAREAGAD-IRFRCGDA 122


>gi|254818306|ref|ZP_05223307.1| methyltransferase type 12 [Mycobacterium intracellulare ATCC 13950]
          Length = 201

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++E          G  LEL CG G+ S+ LA+H  RV AV+     +E AR         
Sbjct: 31  LVEGTGDTAPLAAGSALELGCGTGDCSIYLAQHGWRVTAVDFVAKPLERARAKATKAGAA 90

Query: 258 NVKIVRMSSKEFTQA 272
            V  V+    + ++A
Sbjct: 91  -VDFVQADVTQLSRA 104


>gi|237737786|ref|ZP_04568267.1| methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229419666|gb|EEO34713.1| methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 378

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 14/94 (14%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               ++++  G+G  ++ LA+      VL ++I++ ++E A  N   N   NVK ++   
Sbjct: 202 PSPKIMDIGTGSGAIAISLAKELPNTHVLGLDISEGALEVATQNRDINEATNVKFLKSDV 261

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                       F+ L+D    + +F  I  +PP
Sbjct: 262 ------------FSILRDEKYKNVKFNLIVSNPP 283


>gi|310828818|ref|YP_003961175.1| hypothetical protein ELI_3248 [Eubacterium limosum KIST612]
 gi|308740552|gb|ADO38212.1| hypothetical protein ELI_3248 [Eubacterium limosum KIST612]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +L   K     +LE  CG GN +  LA+    V AV++++  +  A   IA  ++ +V+
Sbjct: 27  RLLLNAKNEVKSVLEFGCGTGNITSELAQKGYAVTAVDLSEEMLTVADEKIAEQNLGDVR 86

Query: 261 IVRMSS------KEFTQAMRREREFNRLKD 284
                       +EF   +      N L D
Sbjct: 87  FFMGDMSNFQIGEEFDAVVSCCDSVNYLPD 116


>gi|301787627|ref|XP_002929227.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog
           [Ailuropoda melanoleuca]
          Length = 439

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 62/194 (31%), Gaps = 15/194 (7%)

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
            +  S  +    +   A +  +  L     +   L   S+       +  L  + W   A
Sbjct: 99  CLEVSRWVEGRGVTWSAELEAD--LPRSWQRHGDLLLLSEDCFQAKQWKNLEPELWEAVA 156

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE--NSFTQPNAG 193
             L     A++ ++   G        L   +        G    +       SF      
Sbjct: 157 SALGVHRVAKRGRVSPDGTRTPAVTLLLGAHGWVEHVDNGIRYEFDVTRCMFSF------ 210

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++ E +  A+    G++L +LY G G F+L    H     V A E    +V A R N
Sbjct: 211 --GNITEKLRVASLPCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRKN 268

Query: 251 IAANHVNNVKIVRM 264
           +  N V +   +  
Sbjct: 269 LDINGVADRCQIHF 282


>gi|300070662|gb|ADJ60062.1| 16S RNA G1207 methylase RsmC [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 227

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D+    + + G ++ ++     F++        +L  +          LL++ CG G
Sbjct: 43  LSHDFQTLTVDLLGLSMRFKTDRGVFSKNGIDYGSRVL--LENYQPEGAKTLLDVGCGYG 100

Query: 222 NFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA+ FD  V  V++   +++  R N   N V+N +I                E +
Sbjct: 101 TLGLTLAKKFDLSVTMVDVNSRALDLCRQNAIDNAVSNTEI----------------ELS 144

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + +    S ++  I  +PP     +    ++  
Sbjct: 145 NIYE--AVSEKYDAIISNPPIRAGKEVVHEILTG 176


>gi|297194603|ref|ZP_06912001.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152341|gb|EFH31676.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 245

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
            G  L+L CG G  +L LA    +V AV+++  ++  A      +   + V+  R  +  
Sbjct: 67  PGRALDLGCGPGRNALYLASLGFQVDAVDLSAEAISWAEERARESGAGSAVRFHRGDAFA 126

Query: 269 FTQA 272
              A
Sbjct: 127 LDPA 130


>gi|294055590|ref|YP_003549248.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614923|gb|ADE55078.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Coraliomargarita akajimensis DSM 45221]
          Length = 280

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 21/127 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              ++E ++   +     +L+L  G G  +L LA+ +    V AV+++  ++  A  N  
Sbjct: 98  TEELVELLVQRLQRAPTCILDLGTGTGALALALAKRYSDAAVTAVDLSAEALTLAAENAE 157

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           A   ++              +     F  L +    S RF  I  +PP    ++    M 
Sbjct: 158 ALDFSDR-----------VRLLEGSWFVPLPE----SERFDLIVSNPPYLTEEE----MT 198

Query: 313 QAYPHIL 319
            A P ++
Sbjct: 199 TAEPEVV 205


>gi|257092787|ref|YP_003166428.1| protein-L-isoaspartate O-methyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045311|gb|ACV34499.1| protein-L-isoaspartate O-methyltransferase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 224

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 67/179 (37%), Gaps = 32/179 (17%)

Query: 156 NKTKICLDRDYVDERLTVAGRTL-IYRQIENSFTQPNAGIN-------------VHMLEW 201
             T+    R  +D R+  A R +  +  + +   Q +A +N              +++  
Sbjct: 21  RDTRELTGRPVLDPRVLEALRGVPRHMFVPDD-LQASAYVNHPLPIGHGQTISQPYIVAL 79

Query: 202 VLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +    +   GD+ LE+  G+G  + +LAR   +V ++EI +     AR  +     +NV+
Sbjct: 80  MSDLIQPRAGDVVLEVGTGSGYQAAILARLVKQVYSLEIIEELAAQARVRLQRLGCDNVE 139

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +   +               R    +   Y    +    PR  +  A +  ++A   ++
Sbjct: 140 VCAGN--------------GRFGWPEHAPYDSIMVTAAAPR--IPPALIEQLKAGGILV 182


>gi|254818552|ref|ZP_05223553.1| hypothetical protein MintA_01441 [Mycobacterium intracellulare ATCC
           13950]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A   I+G++L+   G G+ ++  A        ++ +  ++E AR N     V+ V   
Sbjct: 44  LVALGAIKGEVLDPGTGPGHHAIYYASKGYSATGIDGSAGAIERARANAEKAGVS-VNFE 102

Query: 263 RMSSKEF 269
              + + 
Sbjct: 103 VADATKL 109


>gi|167564152|ref|ZP_02357068.1| ribosomal protein L11 methyltransferase [Burkholderia oklahomensis
           EO147]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+      V  ++I   +VEAA  N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGSVTGIDIDPQAVEAACQNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|156974652|ref|YP_001445559.1| methyltransferase [Vibrio harveyi ATCC BAA-1116]
 gi|224493290|sp|A7MZM6|RLMI_VIBHB RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|156526246|gb|ABU71332.1| hypothetical protein VIBHAR_02370 [Vibrio harveyi ATCC BAA-1116]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 163 KEGLKETTGVLHGEEPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 210

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +            ++L  +   G F L  L     RV+  ++++P+++ A++N
Sbjct: 211 RQQAMKYV---------KDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKFAESKAQLN 313

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 314 GACRGYKDI 322


>gi|157373843|ref|YP_001472443.1| hypothetical protein Ssed_0704 [Shewanella sediminis HAW-EB3]
 gi|157316217|gb|ABV35315.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 363

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
              +L L+          A     RV+ ++ +  ++ A + N   N V    + ++  + 
Sbjct: 175 NKTVLNLFSYTCGIGTAAAVGGAKRVVNIDFSSFALAAGKKNAELNDVTQVCEFIQSDAF 234

Query: 268 EFTQAMRREREFNRL-----KDIDIHSYRFKTIFVDPPRSGLDD 306
              + +   +   R          + + +F  +F+DPPR     
Sbjct: 235 PALRQLAGLKVGGRRNQKLPAYPKLSATQFDLVFLDPPRFAKSP 278


>gi|125623890|ref|YP_001032373.1| ribosomal RNA small subunit methyltransferase C [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|124492698|emb|CAL97652.1| Ribosomal RNA small subunit methyltransferase C [Lactococcus lactis
           subsp. cremoris MG1363]
          Length = 198

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 21/154 (13%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D+    + + G ++ ++     F++        +L  +          LL++ CG G
Sbjct: 14  LSHDFQTLTVDLLGLSMRFKTDRGVFSKNGIDYGSRVL--LENYQPEGAKTLLDVGCGYG 71

Query: 222 NFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA+ FD  V  V++   +++  R N   N V+N +I                E +
Sbjct: 72  TLGLTLAKKFDLSVTMVDVNSRALDLCRQNAIDNAVSNTEI----------------ELS 115

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + +    S ++  I  +PP     +    ++  
Sbjct: 116 NIYE--AVSEKYDAIISNPPIRAGKEVVHEILTG 147


>gi|119607169|gb|EAW86763.1| nuclear receptor coactivator 6 interacting protein, isoform CRA_c
           [Homo sapiens]
          Length = 793

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS---SKE 268
           +++ +CG G  ++  A    RV+A++I    +  AR N     + + ++ +         
Sbjct: 694 VVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS 753

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           F +A                +  F    +  P
Sbjct: 754 FLKADVVFLSPPWGGPDYATAETFDIRTMMSP 785


>gi|91226909|ref|ZP_01261506.1| hypothetical protein V12G01_16032 [Vibrio alginolyticus 12G01]
 gi|91188872|gb|EAS75157.1| hypothetical protein V12G01_16032 [Vibrio alginolyticus 12G01]
          Length = 251

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 47/108 (43%), Gaps = 9/108 (8%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG+G  ++ ++   +  + ++I++  ++ A+    +   +N++ + + + +F+  
Sbjct: 42  VLDVCCGSGIVTIPVSEQLNEAIGIDISEGMLKHAKDKAKSR--SNLRFLHLDATQFSLG 99

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            + +          +    F+    D   +G   +    ++     ++
Sbjct: 100 KKFDLAI-------MTGNAFQAFLSDEMLAGALSSISRHLEKGGRFVF 140


>gi|58267536|ref|XP_570924.1| arginine N-methyltransferase 3 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|57227158|gb|AAW43617.1| arginine N-methyltransferase 3, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 596

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEF 269
           ++++ CG G  S++ A+     V A+E +  +V+ AR NI  N   +V  +++   ++ 
Sbjct: 254 VMDVGCGTGILSMLAAKAGAKHVYAIEASGLAVK-ARENIEKNGFADVITVIQGKVEDV 311


>gi|73668021|ref|YP_304036.1| hypothetical protein Mbar_A0474 [Methanosarcina barkeri str.
           Fusaro]
 gi|72395183|gb|AAZ69456.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 252

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG G F+++LAR    V +V+ A+  V+ AR NI    + N KI +  +    +
Sbjct: 51  HVLDIGCGPGFFTIMLARLKHNVTSVDGAEGMVDRARINIKKEAL-NAKIYKSDAVLLDK 109

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFV 297
                 +    +D+    Y  +  F+
Sbjct: 110 EKENSLDAIVSRDVVWTLYDPEKAFI 135


>gi|332669378|ref|YP_004452386.1| methyltransferase small [Cellulomonas fimi ATCC 484]
 gi|332338416|gb|AEE44999.1| methyltransferase small [Cellulomonas fimi ATCC 484]
          Length = 512

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 16/89 (17%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+L  G G  +L   RH   V+  +I+  ++  A+ N A   V +    R+ S     
Sbjct: 167 RVLDLGTGCGVQALHATRHAHAVVGTDISARALAFAQLNAALAGVADRTTWRLGS----- 221

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                          +   RF  +  +PP
Sbjct: 222 -----------MLEPVAGERFDLVVSNPP 239


>gi|327311697|ref|YP_004338594.1| Met-10+ protein [Thermoproteus uzoniensis 768-20]
 gi|326948176|gb|AEA13282.1| Met-10+ protein [Thermoproteus uzoniensis 768-20]
          Length = 275

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 19/199 (9%)

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           ++  +  E LL       D + S+     +  I      D      + + +A+      I
Sbjct: 6   LLRGVIPEDLLTLVPSSFDIIGSRQGAVAIIEIP-----DELEPYKVEIAEAIRKLNKNI 60

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML-------EWV 202
             + R    +    R Y  E L      +I+++    F + +      +        +  
Sbjct: 61  GAVIRRRGARSGPYRLYNYEILIEGPTEVIHKEH-GYFIKVDP---TKVYFSPRDQSDRA 116

Query: 203 LAATKGIQGD-LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             A     G+ +L L+ G G +++ +A  R    + AVE+    ++    N+  N + +V
Sbjct: 117 ELADMVQDGERVLYLFAGVGPYAVAIAKRRKVRWIYAVELNPWGLKYMVDNVRINKLTSV 176

Query: 260 KIVRMSSKEFTQAMRRERE 278
             +R    +F  A   + +
Sbjct: 177 VPIRADVADFCSAFAAKAD 195


>gi|310767228|gb|ADP12178.1| SAM-dependent methyltransferase [Erwinia sp. Ejp617]
          Length = 396

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 16/122 (13%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
            +          +L  +   G F++  L  +   V++V+ ++ +++ AR N+  N ++  
Sbjct: 212 RLATRRYAQGRRVLNCFSYTGGFAVSALMGNCTEVISVDTSQAALDVARQNVELNGLDVS 271

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYP 316
             + +R    +  +  R E E            +F  I +DPP+   +    +G  + Y 
Sbjct: 272 KAQFLRDDVFKLLRRYRDEGE------------KFDLIIMDPPKFVENKNQLMGACRGYK 319

Query: 317 HI 318
            I
Sbjct: 320 DI 321


>gi|296395171|ref|YP_003660055.1| methyltransferase [Segniliparus rotundus DSM 44985]
 gi|296182318|gb|ADG99224.1| methyltransferase [Segniliparus rotundus DSM 44985]
          Length = 186

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 14/122 (11%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   M   +          +L+LY G+G  +L  ++R       V+  + SV A R NIA
Sbjct: 28  VRAAMFSALGNQMAFDGARVLDLYAGSGALALEAISRGAAHAFCVDSGRSSVAALRANIA 87

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              V  V  VR  +      +                  +  +F DPP    D+    ++
Sbjct: 88  ELDVQGVVSVR--AATVLAVLSSP-----------PPEPYDLVFADPPYDIGDEEIARLL 134

Query: 313 QA 314
           +A
Sbjct: 135 EA 136


>gi|257468005|ref|ZP_05632101.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317062291|ref|ZP_07926776.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313687967|gb|EFS24802.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 393

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 24/166 (14%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQI-----ENSFTQPNAGINVHMLEWVLAA 205
           L G   KT I      + ER+ +    L Y        +  F      ++       +  
Sbjct: 160 LEGVEQKTGIVFGE--IPERVIMEDNGLKYSIDIIDGQKTGFF-----LDQRDSRKFIRK 212

Query: 206 TKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   L+++  +G FS+  L  +  +V A++    ++E  R N A N       V M
Sbjct: 213 YLTKDTKFLDVFSSSGGFSMAALKENCKKVTAIDKEPHALELCRENYALNEFTG-DFVTM 271

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
               F            LK +     +F  + +DPP      A + 
Sbjct: 272 EGDAFL----------LLKTLVGRGEKFDVVTLDPPSLIKRKADIH 307


>gi|253681048|ref|ZP_04861851.1| SAM-dependent methyltransferase [Clostridium botulinum D str. 1873]
 gi|253562897|gb|EES92343.1| SAM-dependent methyltransferase [Clostridium botulinum D str. 1873]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 29/148 (19%)

Query: 211 GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
             +++L  G G    ++A       +  +EI +   E A  +   N + + ++ +     
Sbjct: 48  DRVVDLCSGTGIVPFIIAGKTKASNITGIEIQRDMTEMANRSTKFNKLQDKIEFICEDLT 107

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPHI----- 318
                       N +K I     +   + V+PP    +   V     M  A   I     
Sbjct: 108 NI----------NNIKKIS----KADVVTVNPPYKLCNSGIVNPNDKMAIARHEICCNLE 153

Query: 319 -LYISCNPDSLCRDLSILSTTHTIERLA 345
            + I+C   +L +D   +   H  +RLA
Sbjct: 154 DVIIAC--RTLLKDNKRMYMVHRPDRLA 179


>gi|296109428|ref|YP_003616377.1| methylase [Methanocaldococcus infernus ME]
 gi|295434242|gb|ADG13413.1| methylase [Methanocaldococcus infernus ME]
          Length = 191

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 200 EWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
             +L     ++G  +L++  G G  ++  A     V  ++I   ++E A+ N   N V  
Sbjct: 17  YLLLKNIVDVKGKRVLDVGTGTGILAIASALKGGIVEGIDINPKAIELAKKNAKLNGVK- 75

Query: 259 VKIV 262
           VK  
Sbjct: 76  VKFY 79


>gi|288940517|ref|YP_003442757.1| protein-L-isoaspartate O-methyltransferase [Allochromatium vinosum
           DSM 180]
 gi|288895889|gb|ADC61725.1| protein-L-isoaspartate O-methyltransferase [Allochromatium vinosum
           DSM 180]
          Length = 222

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 12/128 (9%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A +   +LE       G    +LE+  G+G  + VLA    RV  VE      E A+  +
Sbjct: 77  ARMTQALLE------HGTPDTVLEIGTGSGFQTAVLASLVRRVYTVERVGELFERAQERL 130

Query: 252 AANHVNNVKIVRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A  + NV+       +        QA+        +  +         I V P   G  
Sbjct: 131 GALKMRNVRYRHGDGAQGWPEYAPYQAIMVTAAPRGIPRLLAEQLAPGGIMVLPIGEGPR 190

Query: 306 DATVGMVQ 313
            + V +V+
Sbjct: 191 QSLVRLVR 198


>gi|124485044|ref|YP_001029660.1| methyltransferase [Methanocorpusculum labreanum Z]
 gi|124362585|gb|ABN06393.1| methyltransferase [Methanocorpusculum labreanum Z]
          Length = 200

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 22/137 (16%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
               A +   +L     A       +++L CG G  S+  A     V  V+I + +++ A
Sbjct: 26  YMTPAPLAARLLHEAALAGDIEGMTVVDLGCGTGMLSIGAALLGASVTGVDIDEAALKIA 85

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---- 303
           R N     V+                          D         T+ ++PP       
Sbjct: 86  RKNAEKFGVD------------------IEWLRMRIDETAEPLSADTVLMNPPFGAQKEH 127

Query: 304 LDDATVGMVQAYPHILY 320
            D   +        + Y
Sbjct: 128 ADRPFIDFALLTAPVCY 144


>gi|121608462|ref|YP_996269.1| ribosomal protein L11 methyltransferase [Verminephrobacter eiseniae
           EF01-2]
 gi|121553102|gb|ABM57251.1| LSU ribosomal protein L11P methyltransferase [Verminephrobacter
           eiseniae EF01-2]
          Length = 307

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 211 GDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVN 257
           G +L+  CG+G  +L  A+   R V AV+I   +V+A   N  AN V 
Sbjct: 178 GRVLDYGCGSGILALAAAKFGARDVDAVDIDPAAVQATARNAQANAVQ 225


>gi|116754048|ref|YP_843166.1| protein of unknown function Met10 [Methanosaeta thermophila PT]
 gi|116665499|gb|ABK14526.1| methyltransferase [Methanosaeta thermophila PT]
          Length = 341

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSV 244
           F+Q N      + E +  A+ G    +++++ G G FSL +A H    R+ A+EI   + 
Sbjct: 173 FSQGN------LKERMRMASLGKDEVVVDMFAGIGYFSLPMAVHSRPYRITAIEINPVAH 226

Query: 245 EAARYNIAANHVNN-VKIVRMSSKEFTQAMRRER 277
                NI  N V   V+ V       T     +R
Sbjct: 227 RYLVENIRLNRVEEIVEPVLGDCALLTPEGEADR 260


>gi|84683372|ref|ZP_01011275.1| methyltransferase, FkbM family protein [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668115|gb|EAQ14582.1| methyltransferase, FkbM family protein [Rhodobacterales bacterium
           HTCC2654]
          Length = 225

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 199 LEW----VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIA 252
            EW     +         +L++  G G  S++  R      V++VE     +EA R+N+ 
Sbjct: 31  YEWNERDAIERHVKPGDKVLDIGAGAGYISIIAGRAAGPENVISVEGNPVMMEALRHNLD 90

Query: 253 ANHVNNVKI----VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            N     ++    V   + +    +   R+      I         I   P
Sbjct: 91  ENGAQATQVLHGAVVADNFDEDTVLFAARDAFWSSSIANEKTNPDKIVEVP 141


>gi|146278503|ref|YP_001168662.1| methyltransferase small [Rhodobacter sphaeroides ATCC 17025]
 gi|145556744|gb|ABP71357.1| methyltransferase small [Rhodobacter sphaeroides ATCC 17025]
          Length = 271

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
             A        +LEL CG G  SL LA      R+  +E+     E AR N A N V+ +
Sbjct: 54  AAAVPARPGQSVLELGCGAGVASLCLAARVPGLRLAGLEVQPAYAELARVNAARNGVS-L 112

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++V          +RR  + + + +   +     T   DP R 
Sbjct: 113 EVVEGDLAAMPPVLRRSFD-HVIANPPYYPAGGGTGATDPGRE 154


>gi|309791546|ref|ZP_07686045.1| methyltransferase type 11 [Oscillochloris trichoides DG6]
 gi|308226406|gb|EFO80135.1| methyltransferase type 11 [Oscillochloris trichoides DG6]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           RD+ +E L V    L     EN          V  L   L+        +L+L CG G  
Sbjct: 6   RDWWEELLQVHEFALYQDYAENL-----TRQEVDFLAQALSLRGVET--ILDLACGGGRH 58

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           S+ LA+    V+ ++ +   +  AR   +   + N   V+   +  T   R
Sbjct: 59  SIELAQRGLTVIGLDASPRVLAHARSRASELDL-NATFVQGDMRHLTDVGR 108


>gi|307327907|ref|ZP_07607089.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces violaceusniger Tu 4113]
 gi|306886425|gb|EFN17429.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces violaceusniger Tu 4113]
          Length = 281

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 16/88 (18%)

Query: 181 RQIENSFT-----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLV 226
                +F      Q   G+         ++ W + A +    ++  +++L  G+G  +L 
Sbjct: 69  HITGRAFFRYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPLIVDLCAGSGAIALA 128

Query: 227 LARHF--DRVLAVEIAKPSVEAARYNIA 252
           LA+     RV AVE+ + ++  AR N+ 
Sbjct: 129 LAQEVPRSRVHAVELDEGALRWARKNVQ 156


>gi|302554165|ref|ZP_07306507.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471783|gb|EFL34876.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Streptomyces viridochromogenes DSM 40736]
          Length = 281

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 36/173 (20%)

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGI---- 194
           R  LH+ +               + R    E L        +R +E    Q   G+    
Sbjct: 39  RGELHSVRDSDFDARYWE----VIARREAREPLQHITGRAYFRYLE---LQVGPGVFVPR 91

Query: 195 --NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
                ++ W + A +    ++  +++L  G+G  +L LA+     RV AVE+++ +++  
Sbjct: 92  PETESVVGWAIDAVRAMDVVEPCIVDLCTGSGAIALALAQEVPRSRVHAVELSEDALQWT 151

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           R N           V  S  E  Q        N L        +   +  +PP
Sbjct: 152 RKN-----------VEGSRVELRQG-------NALTAFPDLDGQVDLVISNPP 186


>gi|300773796|ref|ZP_07083665.1| ribosomal protein L11 methyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759967|gb|EFK56794.1| ribosomal protein L11 methyltransferase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 279

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 60/169 (35%), Gaps = 25/169 (14%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIEN---SFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
           +  D+ YV            Y  I +   SF   +      ML ++L      + ++L++
Sbjct: 91  VVDDQCYVRATFHEHKEQYPYEIIIDPKMSFGTGHHQTTSMMLSFILENDFEGK-EVLDM 149

Query: 217 YCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            CG G  +++ + R    V AV+     +++   N   N V+N++    S +        
Sbjct: 150 GCGTGILAILASFRGATHVFAVDYDPICIDSVEENKILNQVSNIESQVGSYE-------- 201

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI--LYIS 322
                      +    F TI  +  R+ L +       +      LYIS
Sbjct: 202 ----------VLEGRLFDTIVANINRNILLEQFEQYAASLKDKGELYIS 240


>gi|183598035|ref|ZP_02959528.1| hypothetical protein PROSTU_01391 [Providencia stuartii ATCC 25827]
 gi|188022814|gb|EDU60854.1| hypothetical protein PROSTU_01391 [Providencia stuartii ATCC 25827]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 22/120 (18%)

Query: 209 IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +   L+ + G+G+     L+R  D V  +E+ K + +    N A    +N  I+  +S 
Sbjct: 56  REARCLDCFAGSGSLGFEALSRFADSVTFIELDKQNAQLLTENKARLQSDNANIINGNSL 115

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI-----LYI 321
           E                   +   F  +F+DPP R GL   T+ +++    +     +Y+
Sbjct: 116 EIL---------------GQNGTPFDVVFIDPPFRKGLLSDTIQLLEKNQWLADESWIYV 160


>gi|221133896|ref|ZP_03560201.1| putative methyltransferase SAM dependent [Glaciecola sp. HTCC2999]
          Length = 233

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHF--DRVLAVEIAKPSV 244
            QP+        E V+      +GD++ +  CG G  ++ LA  F   +V+ ++ ++  V
Sbjct: 36  IQPHTK---KAFEQVITWLGAWEGDIIFDSCCGVGLSTIALAERFPDAKVIGIDKSEQRV 92

Query: 245 EAARYN--IAANHVNNVKIVRMSSKEF 269
               ++     N +NN  +VR    +F
Sbjct: 93  GKHLHHSQAVENRLNNHLLVRADVIDF 119


>gi|120609553|ref|YP_969231.1| ribosomal protein L11 methyltransferase [Acidovorax citrulli
           AAC00-1]
 gi|120588017|gb|ABM31457.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase [Acidovorax
           citrulli AAC00-1]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    +A   G  G +L+  CG+G  ++  A+     + AV+I   +VE+ R N  A
Sbjct: 149 TTRMCLRWIARRGGGFGRVLDYGCGSGILAIGAAKFGATDIDAVDIDPAAVESTRLNAEA 208

Query: 254 NHVN 257
           N V 
Sbjct: 209 NGVA 212


>gi|21223721|ref|NP_629500.1| methylase [Streptomyces coelicolor A3(2)]
 gi|256785186|ref|ZP_05523617.1| methylase [Streptomyces lividans TK24]
 gi|289769079|ref|ZP_06528457.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces lividans TK24]
 gi|8568783|emb|CAB94532.1| putative methylase [Streptomyces coelicolor A3(2)]
 gi|289699278|gb|EFD66707.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces lividans TK24]
          Length = 281

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 36/187 (19%)

Query: 129 DAWRECAIRLRDALHARK----YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
            + R  A  L   LH  K    + +       +    + R    E L        +R +E
Sbjct: 21  PSPRTDAEELAAYLHGVKRGELHTVPDADFDARYWEVVARREAREPLQHITGRAYFRYLE 80

Query: 185 NSFTQPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHF--DR 233
               Q   G+         ++ W + A +    ++  +++L  G+G  +L LA+     R
Sbjct: 81  ---LQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPCIVDLCTGSGAIALALAQEVPRSR 137

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           V AVE+++ +++  R N+  + V+               +R+        D+D    +  
Sbjct: 138 VHAVELSEDALKWTRRNMEGSRVD---------------LRQGDALTAFPDLD---GQVD 179

Query: 294 TIFVDPP 300
            +  +PP
Sbjct: 180 LVVSNPP 186


>gi|115522664|ref|YP_779575.1| methyltransferase small [Rhodopseudomonas palustris BisA53]
 gi|115516611|gb|ABJ04595.1| methyltransferase small [Rhodopseudomonas palustris BisA53]
          Length = 291

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIA 240
           ++  S   P   I   M    L         ++E+  G+G  ++  A      VLA++I 
Sbjct: 86  EVPPSVFHPGHFITSKMFAGYLRRQDFAGKRVVEVGTGSGILAISAALAGASHVLALDIN 145

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +V AAR N   N V                 + E   + L        +F  +   PP
Sbjct: 146 PNAVRAARMNANFNGV---------------GAQSEARVSDLFSALAADEKFDVVISSPP 190

Query: 301 RSGLDDATVG 310
               + A + 
Sbjct: 191 SFAGEPADLA 200


>gi|327481990|gb|AEA85300.1| ribosomal protein L11 methyltransferase [Pseudomonas stutzeri DSM
           4166]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L A       LL+  CG+G  ++  L     + +  +I   ++EA+R N   N + 
Sbjct: 148 LEW-LDAQTLDDRSLLDFGCGSGILAIAGLLLGAHQAVGTDIDPQALEASRDNAERNGIA 206

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             +      ++  Q        N L    +   +  T  V P
Sbjct: 207 PERFTLYLPEQLPQEPADVVVANILAGPLVSLAQQITALVKP 248


>gi|294648764|ref|ZP_06726222.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825334|gb|EFF84079.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 237

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERVGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  ++       + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPVEQLALEQAGQYDVVTCMEMMEHVPDPASIV 137


>gi|297570172|ref|YP_003691516.1| RNA methylase [Desulfurivibrio alkaliphilus AHT2]
 gi|296926087|gb|ADH86897.1| putative RNA methylase [Desulfurivibrio alkaliphilus AHT2]
          Length = 286

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 1/115 (0%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              ++E +  A  G    + +L  G+G   +  A      + +EI    + A++ N  A 
Sbjct: 25  QETVIEMLTMAGVGEGDVVYDLGSGDGRIVITAATMGASGVGIEIDPELIRASKVNAKAA 84

Query: 255 H-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
              + V  +     +             L +I++         + P    +  A 
Sbjct: 85  GVADRVVFIEQDLFDARIGDATVVTLYLLPEINLRLRPRLLEVLQPGTRVVSHAF 139


>gi|254818840|ref|ZP_05223841.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium intracellulare ATCC 13950]
          Length = 181

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 2/108 (1%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A      G  L+L CG G  S+ LA     VL ++I+  +V  AR       V      R
Sbjct: 34  AREFPTAGTALDLACGQGTGSVWLALRGLHVLGLDISAVAVAHARELARRAAV--ADRCR 91

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +    +      + +        R     ++    G   A   +
Sbjct: 92  FDVVDLDNGLPAGAPADVILCCKFRDRRLDRAIIERLAPGGLLAIAAL 139


>gi|239787602|emb|CAX84070.1| Ribosomal protein L11 methyltransferase [uncultured bacterium]
          Length = 283

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
               + +LE V  A +   G +L+L  G+G  ++  A    D V+A ++   +VE A  N
Sbjct: 135 TRGCLELLEEV--AGQKGLGRVLDLGTGSGVLAIWAAMLGADGVVATDLDPVAVETAERN 192

Query: 251 IAANHVNNVKIVRMSS 266
              N V     V  S+
Sbjct: 193 ARLNGVAGRVTVVESA 208


>gi|255569649|ref|XP_002525790.1| conserved hypothetical protein [Ricinus communis]
 gi|223534940|gb|EEF36626.1| conserved hypothetical protein [Ricinus communis]
          Length = 641

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           + +++ G G  +L  A    RV A ++   +V+    N   N +   VK+  M  + F  
Sbjct: 472 VCDVFSGVGPIALSAATIVKRVYANDLNPCAVDYLERNSVLNKLERKVKVFNMDGRRFID 531

Query: 272 AM 273
           AM
Sbjct: 532 AM 533


>gi|218197723|gb|EEC80150.1| hypothetical protein OsI_21955 [Oryza sativa Indica Group]
          Length = 1043

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 8/110 (7%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +L+ + G G  S+        V+AVEI    VE A +N     V++ ++ V         
Sbjct: 885 VLDAFAGVGGNSI----QGCYVVAVEIDPRKVELAAHNARIYGVDDMIEFVVADFFHLAP 940

Query: 272 AMRREREF--NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +++ +  F             +  ++ +  PR G         +  P+I+
Sbjct: 941 SLKADLVFLSPPWGGPSYSQAQVYSLDMLKPRDGF-TIFQAAQEISPNII 989


>gi|257059901|ref|YP_003137789.1| methyltransferase type 12 [Cyanothece sp. PCC 8802]
 gi|256590067|gb|ACV00954.1| Methyltransferase type 12 [Cyanothece sp. PCC 8802]
          Length = 441

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L++ CG+G  +L LA      +++ ++I++ S+E A   +  +  + VK   MS ++ +
Sbjct: 62  ILDVACGSGYTTLSLAEANPGAKIIGIDISQASLEMAEARLKYHGHDQVKFHLMSLEDVS 121

Query: 271 QAMRREREFNR------LKDIDIHSYRFKTIF 296
           Q   +    N       L D+D    +F T+ 
Sbjct: 122 QLNLKFDYINAVDILYFLTDLDYAFQKFVTVL 153


>gi|223940890|ref|ZP_03632714.1| Methyltransferase type 11 [bacterium Ellin514]
 gi|223890442|gb|EEF56979.1| Methyltransferase type 11 [bacterium Ellin514]
          Length = 291

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            + +L  G G  S +LA    +V+AV+ ++  +E        N + N++      +
Sbjct: 130 TVADLGSGEGLLSELLALKAKKVIAVDNSERIIEFGANKAKKNGLKNLEFRLGDLE 185


>gi|170019361|ref|YP_001724315.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli ATCC 8739]
 gi|169754289|gb|ACA76988.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli ATCC 8739]
          Length = 310

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVISRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AELISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|134096061|ref|YP_001101136.1| putative methyltransferase [Herminiimonas arsenicoxydans]
 gi|133739964|emb|CAL63015.1| Putative S-adenosyl-L-methionine-dependent methyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 217

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G G       +R   +V+ VE+  P+V          H   V IVR  +   TQ 
Sbjct: 72  LDLFAGTGVLGFEAASRGAAQVVMVEMHTPAVRQLEATKEKLHAEQVAIVRGDALSATQG 131

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP 300
           M+              +  F  IF+DPP
Sbjct: 132 MQARD-----------ATGFNLIFLDPP 148


>gi|332828895|gb|EGK01578.1| hypothetical protein HMPREF9455_02110 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 297

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 67/197 (34%), Gaps = 19/197 (9%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQI-QLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           +    L +  W      +      +  Q     G   + K   D+ +++ +       L 
Sbjct: 39  VWRKSLPEKEWENIPDAIFKREKGKTSQDGNDKGVWTQKKGMPDQWFINYKYKEMN--LK 96

Query: 180 YRQIENSFTQP--NAGINVH--MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL 235
           +R    SF           +   +   +   K  +  +L L+   G  S+        V 
Sbjct: 97  FRLGLTSFKHVGIFPEQAENWNFIYDTIKEIKTEEPKILNLFAYTGGASIAAKSAGADVT 156

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            V+  +  +  +R N+ A+ ++N++ +   + +F    RRE +  +         ++  I
Sbjct: 157 HVDSVRQVITWSRENMEASGLDNIRWIVEDALKF---CRREVKREK---------KYNGI 204

Query: 296 FVDPPRSGLDDATVGMV 312
            +DPP  G        +
Sbjct: 205 ILDPPAYGRGPDGEKWI 221


>gi|257054281|ref|YP_003132113.1| methyltransferase family protein [Saccharomonospora viridis DSM
           43017]
 gi|256584153|gb|ACU95286.1| methyltransferase family protein [Saccharomonospora viridis DSM
           43017]
          Length = 208

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
             GD L+L CGNG  +L LA     V AV+I+  +VE      A+  + + V  VR    
Sbjct: 37  PPGDALDLGCGNGGDALWLAGQGWHVTAVDISTVAVERLTALAASGDLADRVTAVRCDLG 96

Query: 268 EFTQA 272
           E   A
Sbjct: 97  ESFPA 101


>gi|192360476|ref|YP_001980986.1| putative lipoprotein [Cellvibrio japonicus Ueda107]
 gi|190686641|gb|ACE84319.1| putative lipoprotein [Cellvibrio japonicus Ueda107]
          Length = 436

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 23/120 (19%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAAR 248
            N       +             +L+++   G + +  A      V  V+ +  + +A  
Sbjct: 249 VNRAQLQQYVA---------GKRVLDVFSYIGGWGVQAAVAGAQEVFCVDASTAATDAVL 299

Query: 249 YNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            N + N V + V  ++  + +  + +  ++E            RF  + +DPP       
Sbjct: 300 ENASVNGVADKVAAIQGKAIDVLKQLIADQE------------RFDVVVLDPPAFIKKRK 347


>gi|167618631|ref|ZP_02387262.1| ribosomal protein L11 methyltransferase [Burkholderia thailandensis
           Bt4]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+    +  Q  +L+  CG+G  ++ LA+      V  ++I   +VEAAR N   N  
Sbjct: 156 MEWLEQTVQPGQ-TVLDYGCGSGILAI-LAKKCGAGNVTGIDIDPQAVEAARQNSEHNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|148242942|ref|YP_001228099.1| ribosomal protein L11 methyltransferase [Synechococcus sp. RCC307]
 gi|226710123|sp|A5GV37|PRMA_SYNR3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|147851252|emb|CAK28746.1| Ribosomal protein L11 methyltransferase [Synechococcus sp. RCC307]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 89/292 (30%), Gaps = 55/292 (18%)

Query: 80  SLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR 139
           SL ++ L +        +  L+A L ++D+   +             L +A  + A    
Sbjct: 30  SLGVHRLAVRFRPEAPEQRTLQAWLPEVDWPEPERV----------ALAEALAQMAEPFG 79

Query: 140 DALHARKYQIQLIGRANKT-KICLDRDYVDERLTV----------AGRTLIYRQIENSFT 188
            AL + ++++Q       + K     D V +RL +              L       S  
Sbjct: 80  VALPSLRWELQPEEDWALSWKRHWQPDPVGQRLLILPAWLQVPAEHAERLALLIDPGSAF 139

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAA 247
              +     +    L         + +L CG+G   +  L      VLA +    +V A 
Sbjct: 140 GTGSHPTTRLCLEALEKRSLTGSRVADLGCGSGILGIASLVLGAREVLASDTDSLAVRAT 199

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             N A N       V++ S +  Q +      + L              + P  + L  A
Sbjct: 200 AENAALNQAGAHLQVQLGSADVLQQLLAGAPADLL----------LCNILAPVLTALTPA 249

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFP-YTRHMEC 358
              ++                 R   +LS         L DQ P  T H+E 
Sbjct: 250 FSELLT---------------ARGEGLLSG-------LLVDQAPALTAHLEA 279


>gi|323698629|ref|ZP_08110541.1| Methyltransferase type 11 [Desulfovibrio sp. ND132]
 gi|323458561|gb|EGB14426.1| Methyltransferase type 11 [Desulfovibrio desulfuricans ND132]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 20/131 (15%)

Query: 208 GIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             QG  L++  G G  ++ +ARH   +V  ++++   +  AR N     V NV+ V+ ++
Sbjct: 46  PAQGRFLDVGTGTGWIAIGVARHSGAQVTGIDLSDDMLAIARMNADNEGVRNVEFVKGNA 105

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPD 326
                  R   + N    +  H+         P   GL    + + +    ++       
Sbjct: 106 S------RIPFDDNTFDAVFCHNMLHHI----PEPEGLVREMLRVAKPEGAVV------- 148

Query: 327 SLCRDLSILST 337
              RDL  LS 
Sbjct: 149 --IRDLKRLSK 157


>gi|312212448|emb|CBX92531.1| similar to modification methylase [Leptosphaeria maculans]
          Length = 340

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 17/130 (13%)

Query: 180 YRQIENS-FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLA 236
           +    +S F  P+  + V  L   L         ++++ CG+G  ++ LAR +   +VL 
Sbjct: 121 FPASADSVFFGPDTYLFVPFLGSALRHLSQPPTSIIDVCCGSGAGAIHLARQYPQAQVLG 180

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +++   ++E    N     VN          +F Q+       + L      S     I 
Sbjct: 181 LDLNPCALELGAVNAQLADVN---------VDFMQSNLFHAVPHALT-----SNGIDLIV 226

Query: 297 VDPPRSGLDD 306
            +PP     +
Sbjct: 227 SNPPYIASSE 236


>gi|312873656|ref|ZP_07733703.1| methyltransferase small domain protein [Lactobacillus iners LEAF
           2052A-d]
 gi|325911620|ref|ZP_08174028.1| methyltransferase small domain protein [Lactobacillus iners UPII
           143-D]
 gi|311090909|gb|EFQ49306.1| methyltransferase small domain protein [Lactobacillus iners LEAF
           2052A-d]
 gi|325476606|gb|EGC79764.1| methyltransferase small domain protein [Lactobacillus iners UPII
           143-D]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I G++L++  G G   L  A+     RV  +++ + ++  A+ N   N ++NV I    
Sbjct: 60  EISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFSSD 119

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                        +  L D +    +F  I  +PP          ++Q    
Sbjct: 120 C------------YRNLDDQE----QFGLILTNPPIRAGKQVVDDILQNAKK 155


>gi|295096379|emb|CBK85469.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 259

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ +LA        +L+   G G  ++++A+    V   +++   V  A        V +
Sbjct: 34  LDKLLAEFGDRPLRVLDAGGGEGQTAILMAQRGHHVTLCDLSAEMVARAGRAAEEKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N+  +  ++++  Q +  + + 
Sbjct: 94  NMHFIHCAAQDIPQHLETQVDL 115


>gi|323527388|ref|YP_004229541.1| 50S ribosomal protein L11 methyltransferase [Burkholderia sp.
           CCGE1001]
 gi|323384390|gb|ADX56481.1| ribosomal protein L11 methyltransferase [Burkholderia sp. CCGE1001]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  A +  Q  +L+  CG+G  ++ LA+      V  V+I   +VE+AR+N   N  
Sbjct: 156 MEWLEQAVQPGQS-VLDYGCGSGILAI-LAKKCGADPVFGVDIDPQAVESARHNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|255021228|ref|ZP_05293278.1| 3-demethylubiquinone-9 3-methyltransferase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254969343|gb|EET26855.1| 3-demethylubiquinone-9 3-methyltransferase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 62/160 (38%), Gaps = 24/160 (15%)

Query: 192 AGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
             IN   LE++     G      ++++ CG G  S  +AR   +VL V++A+ ++ AAR 
Sbjct: 29  HQINPVRLEFIRRGCGGRLEGLRVVDVGCGAGILSEAMARAGAKVLGVDLAESALAAARK 88

Query: 250 NIAANHVN---NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           +      +    ++   ++ ++         +     ++  H    +++           
Sbjct: 89  HAEQGDQDLSKTLEYRAIAVEDLAAEAAGSFDVVTCMEMLEHVPEPQSVV---------R 139

Query: 307 ATVGMVQAYPHILYISCNPDSLCRD-----LSILSTTHTI 341
           A   +++    + +      ++ R+     L+IL   + +
Sbjct: 140 ACAKLLRPGGQVFF-----ATINRNPKSYLLAILGAEYVL 174


>gi|268590803|ref|ZP_06125024.1| RNA methyltransferase, RsmD family [Providencia rettgeri DSM 1131]
 gi|291313583|gb|EFE54036.1| RNA methyltransferase, RsmD family [Providencia rettgeri DSM 1131]
          Length = 193

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 22/120 (18%)

Query: 209 IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
                L+ + G+G+     L+R  + V  +E+ K + +    N A    +N  +V  +S 
Sbjct: 53  RDARCLDCFAGSGSLGFEALSRFAETVTFIELDKQNAQLLAENKARLQADNATVVNHNSL 112

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI-----LYI 321
            F                      F  +F+DPP R GL + T+ +++    +     +Y+
Sbjct: 113 NFLSQ---------------AGIPFDVVFIDPPFRKGLLNETIQLLEKNQWLAEESWIYV 157


>gi|255025584|ref|ZP_05297570.1| hypothetical protein LmonocytFSL_03220 [Listeria monocytogenes FSL
           J2-003]
          Length = 201

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 19/107 (17%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  
Sbjct: 60  TGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVY 119

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +                 ++ +  ++ I  +PP          +++ 
Sbjct: 120 D-----------------NVTANDYQAIISNPPIRAGKKIVHAILEG 149


>gi|217965657|ref|YP_002351335.1| methyltransferase small domain superfamily [Listeria monocytogenes
           HCC23]
 gi|217334927|gb|ACK40721.1| methyltransferase small domain superfamily [Listeria monocytogenes
           HCC23]
 gi|307569795|emb|CAR82974.1| ribosomal RNA small subunit methyltransferase C [Listeria
           monocytogenes L99]
          Length = 201

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 19/107 (17%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  
Sbjct: 60  TGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVY 119

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +                 ++ +  ++ I  +PP          +++ 
Sbjct: 120 D-----------------NVTANDYQAIISNPPIRAGKKIVHAILEG 149


>gi|297203556|ref|ZP_06920953.1| UbiE family methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197714533|gb|EDY58567.1| UbiE family methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 277

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R   NS          ++L  +          +L++ CG G  +  LA      +
Sbjct: 24  RSHTWRTAANS--------AAYLLGSLKPHM-----KVLDIGCGPGTITADLAALVPDGQ 70

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           V  V+ A   ++ AR   A  H+ NV       
Sbjct: 71  VTGVDHAPGILDQARATAAERHLTNVDFAVADV 103


>gi|218246859|ref|YP_002372230.1| type 12 methyltransferase [Cyanothece sp. PCC 8801]
 gi|218167337|gb|ACK66074.1| Methyltransferase type 12 [Cyanothece sp. PCC 8801]
          Length = 441

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L++ CG+G  +L LA      +++ ++I++ S+E A   +  +  + VK   MS ++ +
Sbjct: 62  ILDVACGSGYTTLSLAEANPGAKIIGIDISQASLEMAEARLKYHGHDQVKFHLMSLEDVS 121

Query: 271 QAMRREREFNR------LKDIDIHSYRFKTIF 296
           Q   +    N       L D+D    +F T+ 
Sbjct: 122 QLNLKFDYINAVDILYFLTDLDYAFQKFVTVL 153


>gi|146280537|ref|YP_001170690.1| HemK family modification methylase [Pseudomonas stutzeri A1501]
 gi|145568742|gb|ABP77848.1| modification methylase, HemK family [Pseudomonas stutzeri A1501]
          Length = 315

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 20/100 (20%)

Query: 203 LAATKGIQGDLLELYCGNGN--FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L    G+    +++ CG+G       LAR    VLAV+I   ++     N A    +N++
Sbjct: 128 LNQHTGMIRRAVDIGCGSGAGAILTALARPQAEVLAVDINPEALRLTHINAALAGADNLR 187

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +                      +      F  I  +PP
Sbjct: 188 ALHSDL------------------LSAVDGEFDLILANPP 209


>gi|71653380|ref|XP_815328.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70880376|gb|EAN93477.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 419

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 7/155 (4%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           V  RL  A  +L+    +  F   N          +L      +  +LE+  G+G  SL+
Sbjct: 63  VPRRLRHAPTSLVEAVNDFHFAMMNDRPRNEFYYELLKRHVTPETGVLEIGAGSGLLSLM 122

Query: 227 LAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKD 284
            A+     V+AVE +    + AR NI AN + + V ++ M S E T      R      D
Sbjct: 123 AAQLGAKWVVAVEGSAEMAKLARANICANKMEHKVTVLHMLSTELT-----LRHLPDRPD 177

Query: 285 IDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           + +       +  +     + D    +++    I+
Sbjct: 178 VMVSEILGTLLLGESALDYIADVRERLLKPTTKII 212


>gi|332023980|gb|EGI64198.1| tRNA (guanine-N(1)-)-methyltransferase [Acromyrmex echinatior]
          Length = 451

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 185 NSFTQP--NAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAK 241
             F Q   N  ++    E     T   QGD+L +++ G G F++  AR   +V A ++  
Sbjct: 236 FDFAQVYWNPRLST---EHTRIITFMTQGDILYDVFAGVGPFAIPAARKKVQVFANDLNP 292

Query: 242 PSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNR 281
            S +  + N   N V +N K   M  + F + + ++    R
Sbjct: 293 ESYKWLQKNALVNKVKDNFKAFNMDGRNFLREVVKDNILTR 333


>gi|296445998|ref|ZP_06887948.1| Methyltransferase type 11 [Methylosinus trichosporium OB3b]
 gi|296256516|gb|EFH03593.1| Methyltransferase type 11 [Methylosinus trichosporium OB3b]
          Length = 252

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 187 FTQ-PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q P       M   + A       + L++ CG G  +  +A     V  V+I    + 
Sbjct: 21  FAQLPIHAEAGAMARTIHACALRPGVEALDVACGPGILACAIAHQALHVTGVDITPAMIT 80

Query: 246 AARYNIAANHVNNVKIVRMSS 266
            A+    A  + N+      +
Sbjct: 81  QAQARQRAEGLTNLAWRIGDA 101


>gi|257068242|ref|YP_003154497.1| 16S rRNA m(2)G 1207 methyltransferase [Brachybacterium faecium DSM
           4810]
 gi|256559060|gb|ACU84907.1| 16S rRNA m(2)G 1207 methyltransferase [Brachybacterium faecium DSM
           4810]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 22/126 (17%)

Query: 193 GINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARY 249
                +L+ +   T    G  +++L CG G  +L  A      +V AV+++  + E    
Sbjct: 44  KATAVLLDRLDEITAPPAGATIVDLGCGWGPIALTAALLHPDAQVWAVDVSSRARELTAE 103

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           N     + NV+++                     +          ++ +PP      A  
Sbjct: 104 NAQRAGLENVRVLA-------------------PEEVPEDLVVDALWSNPPIRIGKQALH 144

Query: 310 GMVQAY 315
            +++ +
Sbjct: 145 ALLREW 150


>gi|227495667|ref|ZP_03925983.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226830899|gb|EEH63282.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 509

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A  +   G +L+L  G G   +  A H D V+A +I+  +V  A +N   N V  +++
Sbjct: 160 LQATPRDQVGRVLDLGTGCGIIGMYAALHADEVVATDISARAVMLADFNAHLNEVK-MQV 218

Query: 262 VRMSSKE 268
           V+ S  E
Sbjct: 219 VQGSLFE 225


>gi|212633321|ref|YP_002309846.1| ribosomal protein L11 methyltransferase [Shewanella piezotolerans
           WP3]
 gi|226710113|sp|B8CHY3|PRMA_SHEPW RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|212554805|gb|ACJ27259.1| Ribosomal protein L11 methyltransferase [Shewanella piezotolerans
           WP3]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+         D+++  CG+G  ++  L    ++V  V+I   ++EA++ N   N V 
Sbjct: 149 LEWLDGLDY-RNKDVIDFGCGSGILAVAALKLGAEKVTGVDIDYQAIEASKANAERNGVE 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|158425970|ref|YP_001527262.1| methlytransferase [Azorhizobium caulinodans ORS 571]
 gi|158332859|dbj|BAF90344.1| methlytransferase [Azorhizobium caulinodans ORS 571]
          Length = 264

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/75 (17%), Positives = 31/75 (41%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + +     +      LL+L CG G+ S   A     V+A +++   ++A         ++
Sbjct: 42  LADLAARLSGAGVDRLLDLGCGGGHVSFTAAPLVRHVMAYDLSSSMLQAVVDEAQGRGLD 101

Query: 258 NVKIVRMSSKEFTQA 272
           N+   +  +++   A
Sbjct: 102 NIATEQGRAEDLPFA 116


>gi|117620314|ref|YP_857842.1| ribosomal protein L11 methyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|166223392|sp|A0KNJ1|PRMA_AERHH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|117561721|gb|ABK38669.1| ribosomal protein L11 methyltransferase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 292

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W+       +  +++  CG+G   +  L     RV+ ++I   +++A+R N   N V 
Sbjct: 147 LQWLDGLDLAGK-TVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASRDNAERNGVA 205

Query: 258 N 258
           +
Sbjct: 206 D 206


>gi|116333663|ref|YP_795190.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367]
 gi|116099010|gb|ABJ64159.1| SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 1/79 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +    L++V        G+LL+L CG+G   ++LA H  +V  +++++  +  A  + 
Sbjct: 16  PAMYDQWLDFVTDRVDPTSGELLDLACGSGRLGVLLAEHGYQVSGLDLSEEMLALAAKHA 75

Query: 252 AANHVNNVKIVRMSSKEFT 270
               V  + +V     + +
Sbjct: 76  EEADVA-LPLVAGDMLDLS 93


>gi|90420558|ref|ZP_01228465.1| SAM-dependent methyltransferase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335286|gb|EAS49039.1| SAM-dependent methyltransferase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 361

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 23/149 (15%)

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGD--------LLELYC 218
           E   +    L Y+    SF           H   W  A     + +        LL ++ 
Sbjct: 139 ETWPLTYDGLSYQGRFTSFRHVGVFPEQAAH---WSFAEDAIRKANRARQTPVRLLNMFG 195

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE 278
             G  SLV AR    V  V+ +K ++  AR N     + + K VR   ++  +    ERE
Sbjct: 196 YTGVASLVAARAGADVTHVDASKKAIGWARENQEMAGLGD-KPVRWICEDAVR--YAERE 252

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             R         ++  I +DPP+ G    
Sbjct: 253 IKR-------GSQYDAILLDPPKFGRGPK 274


>gi|14591489|ref|NP_143569.1| hypothetical protein PH1731 [Pyrococcus horikoshii OT3]
 gi|3258162|dbj|BAA30845.1| 198aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 198

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           L +     +Y   E++F          +L   L         +L++  G G  +L+ AR 
Sbjct: 8   LKIESNEEVYEPAEDTF----------LLAESLLDEVKSDDIVLDVGTGTGILALLAARR 57

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              V+ ++I + ++  A  N   N + NV  +     E
Sbjct: 58  ARFVVGLDINEKAINLAWKNAKINGIKNVVFILSDLFE 95


>gi|327478774|gb|AEA82084.1| HemK family modification methylase [Pseudomonas stutzeri DSM 4166]
          Length = 315

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 20/100 (20%)

Query: 203 LAATKGIQGDLLELYCGNGN--FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L    G+    +++ CG+G       LAR    VLAV+I   ++     N A    +N++
Sbjct: 128 LNQHTGMIRRAVDIGCGSGAGAILTALARPQAEVLAVDINPEALRLTHINAALAGADNLR 187

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +                      +      F  I  +PP
Sbjct: 188 ALHSDL------------------LSAVDGEFDLILANPP 209


>gi|317509147|ref|ZP_07966772.1| RsmD family RNA methyltransferase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252553|gb|EFV11998.1| RsmD family RNA methyltransferase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 187

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 13/114 (11%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           + + +     +  +L+LY G+G      ++R  +  + VE A  +V+A R NIA+  +  
Sbjct: 34  DALRSYIDLDEARVLDLYAGSGALGFEAVSRGAETAVLVEHAAVAVKALRANIASLGLEG 93

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              VR+   +  QA+               +  +  +  DPP          ++
Sbjct: 94  --RVRVQVGKVQQALAGH----------APAEPYDLVLADPPYDIGGGEVADVL 135


>gi|313680136|ref|YP_004057875.1| tRNA (adenine-58-n(1)-) methyltransferase [Oceanithermus profundus
           DSM 14977]
 gi|313152851|gb|ADR36702.1| tRNA (adenine-58-N(1)-) methyltransferase [Oceanithermus profundus
           DSM 14977]
          Length = 277

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNN 258
           VL         +LE   G+G  +L LAR       V++ E     +  AR N+ A  V N
Sbjct: 87  VLMLDLAPGERVLEAGSGSGALALFLARAVGPEGEVVSYERRADFLARARENVEAWGVRN 146

Query: 259 VKIVRMSSKEFT 270
           V        E  
Sbjct: 147 VDFRHGDLAEAA 158


>gi|320109049|ref|YP_004184639.1| type 11 methyltransferase [Terriglobus saanensis SP1PR4]
 gi|319927570|gb|ADV84645.1| Methyltransferase type 11 [Terriglobus saanensis SP1PR4]
          Length = 267

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +       G +L+  CG G  +  LAR F   + ++I++  +  A    A N   + + V
Sbjct: 57  IGLQPDRDGAVLDFGCGVGRLTQALARRFQSSVGIDISQEMITQAN---ALNQYEHCRYV 113

Query: 263 R 263
            
Sbjct: 114 A 114


>gi|315505178|ref|YP_004084065.1| methyltransferase type 12 [Micromonospora sp. L5]
 gi|315411797|gb|ADU09914.1| Methyltransferase type 12 [Micromonospora sp. L5]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN---I 251
              + E   A   G    LL++ CG G      AR FDRV  +E++   VEAAR N    
Sbjct: 34  AAFVAEQARALLPG-AATLLDVACGTGAHLRAFARLFDRVEGLELSPAMVEAARTNTPGA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAM 273
             +H +          +    M
Sbjct: 93  VVHHGDMRSFHLGERYDVITCM 114


>gi|269837684|ref|YP_003319912.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269786947|gb|ACZ39090.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 155

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 12/109 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           D+L+L C NG  S  LA    RV  V+++   +E AR    A     V+ +   +     
Sbjct: 45  DVLDLGCANGATSRALADLGARVTGVDVSARLIELARQR-EAARPRGVRYLVGDAAHL-- 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVD-PPRSGLDDATVGMVQAYPHIL 319
                     L D          + +D     G       +++     +
Sbjct: 102 --------PDLADASFDRITASMVLMDIENAEGAIREVARLLRPGGRFV 142


>gi|171689008|ref|XP_001909444.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944466|emb|CAP70577.1| unnamed protein product [Podospora anserina S mat+]
          Length = 574

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 211 GDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKE 268
             +L++ CG G  S+  A+    +VLAV+ +   ++ AR NI  N ++NV   +R   +E
Sbjct: 266 KTVLDIGCGTGILSMFAAKAGAAKVLAVDNSAI-IDKARENIFNNGLDNVITCIRGKIEE 324

Query: 269 FT 270
            T
Sbjct: 325 VT 326


>gi|167625805|ref|YP_001676099.1| ribosomal protein L11 methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|189037703|sp|B0TJ37|PRMA_SHEHH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|167355827|gb|ABZ78440.1| ribosomal protein L11 methyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+       + D+++  CG+G  ++  L    +RV  ++I   ++EA++ N   N V 
Sbjct: 149 LEWLDGLDYSNK-DVIDFGCGSGILAVAALKLGAERVTGIDIDYQAIEASKANAERNGVQ 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|149372324|ref|ZP_01891512.1| putative protoporphyrinogen oxidase [unidentified eubacterium
           SCB49]
 gi|149354714|gb|EDM43277.1| putative protoporphyrinogen oxidase [unidentified eubacterium
           SCB49]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 21/110 (19%)

Query: 195 NVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
              ++EW+L  AA      ++L++  G+G  ++ LA+ F   +V A +I++ +++ A+ N
Sbjct: 98  TEELVEWILVEAANNEDDKEILDIGTGSGCIAVSLAKEFDKAQVSAYDISEGALKVAQEN 157

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              N V     VR  + +                +D     F  I  +PP
Sbjct: 158 ALTNKVE----VRFKNVDILA-------------LDELEQSFDVIVSNPP 190


>gi|157962942|ref|YP_001502976.1| HemK family modification methylase [Shewanella pealeana ATCC
           700345]
 gi|157847942|gb|ABV88441.1| modification methylase, HemK family [Shewanella pealeana ATCC
           700345]
          Length = 280

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 21/157 (13%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   +V A++    +V  A+ N  
Sbjct: 98  TEILVETALNLPLAESAKVLDLGTGTGAIALSLAHERSEWQVCAIDKVDDAVALAKENRT 157

Query: 253 ANHVNNVKIVR---MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
              +  V + +     + E             + + D H  +         R     A  
Sbjct: 158 NLKLEQVDVFQSDWFDAVECYDFNLIVSNPPYIDEEDEHLSQGDV------RFEPASALT 211

Query: 310 GMVQAYPHILYISCNPDSLCRD------LSILSTTHT 340
              + +  + YI        RD        +L   + 
Sbjct: 212 APQRGFADLFYI----AESARDYLAPGGYLLLEHGYQ 244


>gi|324113748|gb|EGC07723.1| methyltransferase domain-containing protein [Escherichia fergusonii
           B253]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGSQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|307728878|ref|YP_003906102.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1003]
 gi|307583413|gb|ADN56811.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. CCGE1003]
          Length = 217

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 161 CLDRDYVDERLTVAGRTLI---YRQIENSFTQPNAGINVHMLE------WVLAATKGIQG 211
            LD+D ++    V     +   YR++  +  +       HML        +         
Sbjct: 20  VLDQDVLNLLSIVKRENFVPAAYRELAFADFEVPLPAGQHMLAPRVEARVLQELAVKKHE 79

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            +LE+  G+G  + +LA     VL V+I     E A+ N+  N V NV++    
Sbjct: 80  SVLEIGAGSGYMAALLAHRAQHVLTVDIEPELAELAKANLIGNGVLNVEVATGD 133


>gi|269215989|ref|ZP_06159843.1| protein-(glutamine-N5) methyltransferase [Slackia exigua ATCC
           700122]
 gi|269130248|gb|EEZ61326.1| protein-(glutamine-N5) methyltransferase [Slackia exigua ATCC
           700122]
          Length = 329

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           + ++  G+G  +  +A      RV+A +I+  +V  AR N+A   + +   VR    +  
Sbjct: 162 VADVCTGSGCIACAIASEHPDARVVATDISPDAVALARRNVARLGLGDRVDVR--EGDLC 219

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
             +  +  F+ +  I    Y    +  D PR 
Sbjct: 220 APLAADAPFDLV--ISNPPYVPTAVLNDMPRE 249


>gi|260220861|emb|CBA28851.1| 3-demethylubiquinone-9 3-methyltransferase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 257

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 41/110 (37%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L W+          ++++ CG G  +   AR   +VL ++++  +++ A+ + 
Sbjct: 53  HQINPLRLAWIQTLVPLAGKTMVDVGCGGGILADSAARQGAKVLGIDLSTKALKVAQLHA 112

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
                 NV    +S++          +     ++  H     ++     R
Sbjct: 113 LEAETPNVTYREVSAEALAAEAPGSMDVVTCMEMLEHVPNPASVVEACAR 162


>gi|229012440|ref|ZP_04169615.1| Methyltransferase Atu1041 [Bacillus mycoides DSM 2048]
 gi|228748799|gb|EEL98649.1| Methyltransferase Atu1041 [Bacillus mycoides DSM 2048]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAAR 248
            N  I    ++ ++   KG    +L+L CG+G+FS     +    V+ V+I+K  +E A+
Sbjct: 25  ANDFIEQPAIKSLILCLKGKS--VLDLGCGDGHFSKYCIENGAKNVIGVDISKNMIERAK 82

Query: 249 YNIAANHVNNVKIVRMSSKE 268
                N  +N++ + +  ++
Sbjct: 83  ---KLNQDDNIEFMCLPMED 99


>gi|229060810|ref|ZP_04198165.1| Methyltransferase Atu1041 [Bacillus cereus AH603]
 gi|228718457|gb|EEL70089.1| Methyltransferase Atu1041 [Bacillus cereus AH603]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAAR 248
            N  I    ++ ++   KG    +L+L CG+G+FS     +    V+ V+I+K  +E A+
Sbjct: 25  ANDFIEQPAIKSLILCLKGKS--VLDLGCGDGHFSKYCIENGAKNVIGVDISKNMIERAK 82

Query: 249 YNIAANHVNNVKIVRMSSKE 268
                N  +N++ + +  ++
Sbjct: 83  ---KLNQDDNIEFMCLPMED 99


>gi|229103496|ref|ZP_04234178.1| Methyltransferase type 11 [Bacillus cereus Rock3-28]
 gi|228679992|gb|EEL34187.1| Methyltransferase type 11 [Bacillus cereus Rock3-28]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V          LL++  G G+ + +LA  F  V+A+++ +  +E A+  I  N 
Sbjct: 31  QYVVQQVEPRHNN---RLLDIATGGGHVANLLAPLFKEVVALDLTEKMLENAKKFILGNG 87

Query: 256 VNNVKIVRMSSKEFTQAMRR 275
            +NV  +   +++   A + 
Sbjct: 88  HDNVSFIVGHAEKLPFADKA 107


>gi|118478236|ref|YP_895387.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|196043411|ref|ZP_03110649.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus 03BB108]
 gi|225864863|ref|YP_002750241.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus 03BB102]
 gi|229185105|ref|ZP_04312293.1| Methyltransferase type 11 [Bacillus cereus BGSC 6E1]
 gi|118417461|gb|ABK85880.1| methyltransferase [Bacillus thuringiensis str. Al Hakam]
 gi|196025720|gb|EDX64389.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus 03BB108]
 gi|225785811|gb|ACO26028.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus 03BB102]
 gi|228598362|gb|EEK55994.1| Methyltransferase type 11 [Bacillus cereus BGSC 6E1]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFKEVVALDLTEKMLENAKDFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAENL 101


>gi|186683581|ref|YP_001866777.1| methyltransferase type 12 [Nostoc punctiforme PCC 73102]
 gi|186466033|gb|ACC81834.1| Methyltransferase type 12 [Nostoc punctiforme PCC 73102]
          Length = 254

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            I +  LE +L         +L+L CG G  S  L     +V  ++ ++  +E A  N  
Sbjct: 30  KIALPTLEKLLLPYVPEGASILDLCCGTGELSQWLLNKGYQVTGIDRSQRMLEYAHQNA- 88

Query: 253 ANHVNNVKIVRMSSKEF 269
                N K++    + F
Sbjct: 89  ----PNCKLILGDVRFF 101


>gi|300897013|ref|ZP_07115492.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 198-1]
 gi|300359194|gb|EFJ75064.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 198-1]
          Length = 311

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|296130197|ref|YP_003637447.1| Methyltransferase type 11 [Cellulomonas flavigena DSM 20109]
 gi|296022012|gb|ADG75248.1| Methyltransferase type 11 [Cellulomonas flavigena DSM 20109]
          Length = 634

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVN 257
            EWV         ++L+L CG G  S +L  R   RV+ V+++  +VE A  + A   + 
Sbjct: 390 YEWVARLV--ADKEVLDLGCGTGYGSRLLRERGARRVVGVDVSGEAVERATADEALAGLE 447

Query: 258 NVKIVRMSSK 267
             +I+    +
Sbjct: 448 FRQILPTDRE 457


>gi|292654335|ref|YP_003534232.1| N2-methylguanosine tRNA methyltransferase [Haloferax volcanii DS2]
 gi|291370624|gb|ADE02851.1| N2-methylguanosine tRNA methyltransferase [Haloferax volcanii DS2]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 4/137 (2%)

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDY--VDERLTVAGRTLI-YRQIENSFTQPNA 192
             L  AL  R + + L    ++ ++C   D   V      A R     +  +  F QP +
Sbjct: 101 RELGSALVDRGFGVDLDDPDHELRVCFSEDACLVGWTAVEAVRDFTDRKPTDRPFFQPGS 160

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
              V    +V  A       +L+  CG G   L        V+ V+     V  AR N+ 
Sbjct: 161 MAPVDARAFVNMAGAEPGARILDPMCGTGGVLLEAGLVGADVVGVDAQAKMVGGARENLR 220

Query: 253 ANHVNNVKIVRMSSKEF 269
             +V +  +VR  +   
Sbjct: 221 H-YVGSGDVVRGDATAL 236


>gi|229097408|ref|ZP_04228370.1| Methyltransferase type 11 [Bacillus cereus Rock3-29]
 gi|229116403|ref|ZP_04245793.1| Methyltransferase type 11 [Bacillus cereus Rock1-3]
 gi|228667235|gb|EEL22687.1| Methyltransferase type 11 [Bacillus cereus Rock1-3]
 gi|228686219|gb|EEL40135.1| Methyltransferase type 11 [Bacillus cereus Rock3-29]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V          LL++  G G+ + +LA  F  V+A+++ +  +E A+  I  N 
Sbjct: 31  QYVVQQVEPRHNN---RLLDIATGGGHVANLLAPLFKEVVALDLTEKMLENAKKFILGNG 87

Query: 256 VNNVKIVRMSSKEFTQAMRR 275
            +NV  +   +++   A + 
Sbjct: 88  HDNVSFIVGHAEKLPFADKA 107


>gi|225848045|ref|YP_002728208.1| S-adenosylmethionine-dependent methyltransferase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643992|gb|ACN99042.1| S-adenosylmethionine-dependent methyltransferase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            LL+  CG G  +  L     R + V+ ++   E        N+++NV+++ +  ++
Sbjct: 39  KLLDFGCGTGLLTFFLIDKVGRAVGVDSSQGMCEVFLKKAKENNIDNVEVLNVDLEK 95


>gi|206562597|ref|YP_002233360.1| putative SAM-dependent methyltransferase [Burkholderia cenocepacia
           J2315]
 gi|198038637|emb|CAR54597.1| putative SAM-dependent methyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            AA    +  +L+L CG G F+  LA     V+A++ A   ++ AR           +  
Sbjct: 33  AAAIGATRRRVLDLGCGTGTFARRLAAAGHDVVAIDPAPAMIDYARR----------QPG 82

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
             + + F  A+           + +  + F+ +  D            ++      L+ +
Sbjct: 83  ADAVRWFACALDGLPPGTPFDAVVMTGHAFQCLLTDDDIDATLRGVRRVLADGGRFLFDT 142

Query: 323 CNPDS 327
            NP +
Sbjct: 143 RNPRT 147


>gi|118594163|ref|ZP_01551510.1| ribosomal protein L11 methyltransferase [Methylophilales bacterium
           HTCC2181]
 gi|118439941|gb|EAV46568.1| ribosomal protein L11 methyltransferase [Methylophilales bacterium
           HTCC2181]
          Length = 294

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           +EW+L        ++L+  CG+G  ++  A+    + VL V+I   ++ A+  N A N+V
Sbjct: 153 IEWLLDNM-EKGDNVLDYGCGSGILAI-CAKKLGANNVLGVDIDPQAIIASNQNAAINNV 210


>gi|117619179|ref|YP_854738.1| generic methyltransferase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560586|gb|ABK37534.1| generic methyltransferase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 716

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 13/167 (7%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           E  T+  + L ++     F   N       L  + +         L++ C  G  S  LA
Sbjct: 476 ETDTLVAQYLDFQYGPTHFGVANYAQT---LAGLASELCSRHERALDIGCATGRASFELA 532

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R F  V  V+ +   ++ A    + +       V     E+ +A     E  R +   +H
Sbjct: 533 RRFAHVDGVDYSARFIDVALALASQDSFRYAVPVEGELVEYCEARLSRHELGREQSERVH 592

Query: 289 SYRFKTIFVDPPRSGLDDATVG--MVQAYPHILYISCNPDSLCRDLS 333
             +        PR G  D  +   ++            P    RD++
Sbjct: 593 FSQGDA-CNLKPRYGDYDLVLASNLIDRLRE-------PARFLRDIA 631


>gi|323973204|gb|EGB68396.1| methyltransferase domain-containing protein [Escherichia coli
           TA007]
          Length = 234

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAECGHQVILCDLSAQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|309803516|ref|ZP_07697609.1| methyltransferase small domain protein [Lactobacillus iners LactinV
           11V1-d]
 gi|309808222|ref|ZP_07702131.1| methyltransferase small domain protein [Lactobacillus iners LactinV
           01V1-a]
 gi|308164400|gb|EFO66654.1| methyltransferase small domain protein [Lactobacillus iners LactinV
           11V1-d]
 gi|308168510|gb|EFO70619.1| methyltransferase small domain protein [Lactobacillus iners LactinV
           01V1-a]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I G++L++  G G   L  A+     RV  +++ + ++  A+ N   N ++NV I    
Sbjct: 60  EISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFSSD 119

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                        +  L D +    +F  I  +PP          ++Q    
Sbjct: 120 C------------YRNLDDQE----QFGLILTNPPIRAGKQVVDDILQNAKK 155


>gi|307352413|ref|YP_003893464.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307155646|gb|ADN35026.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 280

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
              + W+L         +L+L CG G +  +L      V  V+++K S++ A+ +   + 
Sbjct: 53  EKTVGWILDRLGKENAKILDLGCGPGLYCEMLTEAGHDVTGVDLSKRSIDYAKKSAEESG 112

Query: 256 VNNVKIVRMS------SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + N++ +  +      S++F   M    +F+ L   +  +   K   V  P
Sbjct: 113 L-NIEYINKNYLDLDLSEKFDLVMMIFCDFDVLNPDERDNLLEKIYSVLKP 162


>gi|227495176|ref|ZP_03925492.1| possible 16S rRNA methyltransferase [Actinomyces coleocanis DSM
           15436]
 gi|226831628|gb|EEH64011.1| possible 16S rRNA methyltransferase [Actinomyces coleocanis DSM
           15436]
          Length = 218

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 17/103 (16%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
               G  L++ CG G  S +L +     ++ AV++   +++  + N  AN   NV+    
Sbjct: 72  PPASGRFLDVGCGWGVISTLLGKFSPDAKIWAVDVNGRALDLTKRNANANGCTNVETY-- 129

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDD 306
                            L+       +F  I+ +PP R G  +
Sbjct: 130 ------------YAHEALEKARAEGLQFDLIWSNPPIRVGKAE 160


>gi|303275864|ref|XP_003057226.1| methyltransferase [Micromonas pusilla CCMP1545]
 gi|226461578|gb|EEH58871.1| methyltransferase [Micromonas pusilla CCMP1545]
          Length = 532

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK---IVRMSSKEF 269
           +L+L  G G  +L+ AR  +RV A ++   +++    N   N     +   I  + +++ 
Sbjct: 347 VLDLCAGVGPIALLAARKCERVYANDLNPKAIDYLSVNDQKNGKPKRRLAGITCLDARDA 406

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +       F+   D  +   RF    ++ P
Sbjct: 407 VELRVSRVGFD--ADGKLQGVRFTQAVMNLP 435


>gi|168491916|ref|ZP_02716059.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus pneumoniae CDC0288-04]
 gi|183573762|gb|EDT94290.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus pneumoniae CDC0288-04]
          Length = 279

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 35/175 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+    L V  R LI R                ++E +L      
Sbjct: 62  QLAAHKPAQYIIGQADFYGMHLKVDERVLIPRPE-----------TEELVELILTENLET 110

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A ++++ ++E A  N +  ++N          
Sbjct: 111 NLSVLDIGTGSGAIALALAKNRPAWSVTAADVSQEALELASENASDQNLN---------- 160

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPHIL 319
                      F +       S ++  I  +PP   R    +  + ++ + PH+ 
Sbjct: 161 ---------IFFKKSDCFAEISEKYDIIVSNPPYISREDESEVGLNVLHSEPHLA 206


>gi|90108472|pdb|1WS6|A Chain A, The Structure Of Thermus Thermphillus Hb8 Hypothetical
           Protein Ttha0928
          Length = 171

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L      +G  L+ + G+G   L  A      + VE    +V   + N+    +   ++V
Sbjct: 35  LRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-GARVV 93

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            +  + F            L +      RF   F  PP +    A  G + A
Sbjct: 94  ALPVEVF------------LPEAKAQGERFTVAFXAPPYAXDLAALFGELLA 133


>gi|327253711|gb|EGE65340.1| protein smtA [Escherichia coli STEC_7v]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGSQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|326794470|ref|YP_004312290.1| protein-L-isoaspartate O-methyltransferase [Marinomonas
           mediterranea MMB-1]
 gi|326545234|gb|ADZ90454.1| protein-L-isoaspartate O-methyltransferase [Marinomonas
           mediterranea MMB-1]
          Length = 220

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             M EW+L      +G +LE+  G+G  + +LA  F++V  +E  K  ++ A   +A   
Sbjct: 75  ARMSEWLL--QYARRGRVLEIGTGSGYQTCILANLFNKVHTIERQKALLDLAMKRLANFG 132

Query: 256 VNNVKIVRMS 265
           V+NV+     
Sbjct: 133 VSNVEFHHGD 142


>gi|317123694|ref|YP_004097806.1| methyltransferase small [Intrasporangium calvum DSM 43043]
 gi|315587782|gb|ADU47079.1| methyltransferase small [Intrasporangium calvum DSM 43043]
          Length = 506

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 18/99 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                +      L+L  G G  +L LA H   ++A +I++ ++  AR+N A   ++ V +
Sbjct: 158 ATWTIRHRVDRALDLGTGCGVQALHLAGHTGSIVATDISERALAFARFNAALAGLD-VDL 216

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            R    +                  +   RF  I  +PP
Sbjct: 217 RRGDLLD-----------------PVAGERFSLIVSNPP 238


>gi|238632116|gb|ACR50801.1| putative methyltransferase [Streptomyces longisporoflavus]
          Length = 249

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ++ ++        G  L+L CG G  ++ LA     V A++++  +V           
Sbjct: 55  ESLVSYLDRGLVAPPGRALDLGCGPGRNAVQLAAAGFEVDAIDLSPAAVAWGEERAREAG 114

Query: 256 VNNVKIVRMSSKE 268
           V+ V+  +  + +
Sbjct: 115 VD-VRFSQGDAFD 126


>gi|282901073|ref|ZP_06309006.1| Magnesium protoporphyrin O-methyltransferase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194164|gb|EFA69128.1| Magnesium protoporphyrin O-methyltransferase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 227

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 16/133 (12%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI--AANH 255
           ++ W+       Q  + +  CG G+ S+ LA    +V A +I+   V  A+     +  +
Sbjct: 49  VITWLKDDQNLSQLTICDAGCGVGSLSIPLAVEGAKVYASDISAKMVAEAQDRAVISLKN 108

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             N        +  T               + H+     + +  P+   D+    +    
Sbjct: 109 TANPTFTVQDLESLTG--------------NYHTVICLDVLIHYPQEKADEMISHLCSLA 154

Query: 316 PHILYISCNPDSL 328
              + IS  P + 
Sbjct: 155 RSRIIISFAPKTF 167


>gi|260772748|ref|ZP_05881664.1| hypothetical protein VIB_001204 [Vibrio metschnikovii CIP 69.14]
 gi|260611887|gb|EEX37090.1| hypothetical protein VIB_001204 [Vibrio metschnikovii CIP 69.14]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 210 QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSK 267
             ++L  +   G F L  L     RV+  ++++P+++ A+ N   N  + + K     + 
Sbjct: 220 DKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDNAKMNAELNEFDISKKRAVFLNA 279

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
           +  + +R  RE            +F  + +DPP+     A + G  + Y  I
Sbjct: 280 DVFKLLREYRE---------QGTQFDVVIMDPPKFAESKAQLNGACRGYKDI 322


>gi|288942339|ref|YP_003444579.1| magnesium protoporphyrin O-methyltransferase [Allochromatium
           vinosum DSM 180]
 gi|288897711|gb|ADC63547.1| magnesium protoporphyrin O-methyltransferase [Allochromatium
           vinosum DSM 180]
          Length = 233

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AAN 254
             +L W+     G    LL+  CG G  ++  AR    V+A+++A   +E AR  + +  
Sbjct: 50  QTLLSWLPQDLTG--KRLLDAGCGTGMLAVEAARRGAEVVAIDVAPTLIEIARERLPSDL 107

Query: 255 HVNNVKIVRMSSKE 268
              +V        +
Sbjct: 108 GAGSVDFQAGDMLD 121


>gi|116753331|ref|YP_842449.1| methyltransferase small [Methanosaeta thermophila PT]
 gi|116664782|gb|ABK13809.1| methyltransferase [Methanosaeta thermophila PT]
          Length = 209

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                 +   +L   +A  +G    +++L CG G  ++  A        V+I + ++  A
Sbjct: 26  YMTPPSLASDLLY--IAYMRGELSQVIDLGCGTGILAIGAALLGAMAYGVDIDRQALRIA 83

Query: 248 RYNIAANHVNNVKIVRMSSKEFT 270
           R N     V +V  +    +   
Sbjct: 84  RENAEMLGV-HVDFILGDIERIA 105


>gi|191166996|ref|ZP_03028819.1| SmtA protein [Escherichia coli B7A]
 gi|193070746|ref|ZP_03051681.1| SmtA protein [Escherichia coli E110019]
 gi|300823661|ref|ZP_07103788.1| methyltransferase domain protein [Escherichia coli MS 119-7]
 gi|300902920|ref|ZP_07120865.1| methyltransferase domain protein [Escherichia coli MS 84-1]
 gi|301302470|ref|ZP_07208601.1| methyltransferase domain protein [Escherichia coli MS 124-1]
 gi|309795094|ref|ZP_07689514.1| methyltransferase domain protein [Escherichia coli MS 145-7]
 gi|190902990|gb|EDV62716.1| SmtA protein [Escherichia coli B7A]
 gi|192955939|gb|EDV86407.1| SmtA protein [Escherichia coli E110019]
 gi|300405062|gb|EFJ88600.1| methyltransferase domain protein [Escherichia coli MS 84-1]
 gi|300523861|gb|EFK44930.1| methyltransferase domain protein [Escherichia coli MS 119-7]
 gi|300842309|gb|EFK70069.1| methyltransferase domain protein [Escherichia coli MS 124-1]
 gi|308121398|gb|EFO58660.1| methyltransferase domain protein [Escherichia coli MS 145-7]
 gi|315257962|gb|EFU37930.1| methyltransferase domain protein [Escherichia coli MS 85-1]
 gi|320202317|gb|EFW76888.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           EC4100B]
 gi|323185373|gb|EFZ70737.1| protein smtA [Escherichia coli 1357]
 gi|323947290|gb|EGB43298.1| methyltransferase domain-containing protein [Escherichia coli H120]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDHVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|329912958|ref|ZP_08275852.1| Hypothetical adenine-specific methylase yfcB [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545480|gb|EGF30683.1| Hypothetical adenine-specific methylase yfcB [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 292

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 27/162 (16%)

Query: 102 AKLFQIDYLTSQSDQA--IVTLIYHRLLDDAWRECAIRLR-DALHARKYQIQLIGRANK- 157
           AKLF     ++  D+A  ++    H  LD        RL  D ++A    I+      + 
Sbjct: 22  AKLFFGHGSSNALDEAAYLILHTLHLPLDKLDPFLDARLLPDEINALLEVIRRRAVERQP 81

Query: 158 -----TKICLDRD--YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ 210
                 +  L     YVDER+ V  R+ I   I + F+            WV  A   + 
Sbjct: 82  AAYITQQAWLGDYHFYVDERVLV-PRSFIAELIPDQFS-----------PWVSDAESVL- 128

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
            ++LEL  G+G  +++LA  F    V A++I+  ++  AR N
Sbjct: 129 -NILELCTGSGCLAIMLADAFPNAHVDAIDISADALAVARRN 169


>gi|323452951|gb|EGB08824.1| hypothetical protein AURANDRAFT_12241 [Aureococcus anophagefferens]
          Length = 278

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 87/248 (35%), Gaps = 34/248 (13%)

Query: 91  MATIRLEPLLRAKL-FQIDYLTSQSDQAIVTLIYHRLLDDAW-RECAIRLRDALHARKYQ 148
                 E  L+  L   +D  TS      V  +  R   + + R     L D +   +  
Sbjct: 5   YDYFTAEEALKRVLPAGVDAPTSFEAAGHVAHLNLRPEHEPYKRIIGEILLDKVATVRTV 64

Query: 149 IQLIGRANKTKICLDRDYV----DERLTVAGRTLIYRQ-IENSFTQPNAGINVH---MLE 200
           +  +G         D + +    D ++ +  +   +   + N +   N+ +      +LE
Sbjct: 65  VNKVGDIANEFRTYDLEILAGDPDTKVALKEQGCHFEFDVRNVYW--NSRLQAEHGRLLE 122

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          + +  CG G FS+ LA     R  A ++   SVE  R N   N   ++
Sbjct: 123 TI-----PAGSLVADCTCGVGPFSVPLAAKRRIRCHANDLNPKSVEYLRANKDRNRCGDL 177

Query: 260 KIVRMS--SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAY 315
             VR    +++F + +  E              R      + P SG++  DA   +  A 
Sbjct: 178 LEVRGPGCARDFLRGLVAE------------GLRPTHAIYNLPASGIELLDAFRDLELAA 225

Query: 316 PHILYISC 323
           P +++  C
Sbjct: 226 PVVVHCYC 233


>gi|319947034|ref|ZP_08021268.1| protein-(glutamine-N5) methyltransferase [Streptococcus australis
           ATCC 700641]
 gi|319747082|gb|EFV99341.1| protein-(glutamine-N5) methyltransferase [Streptococcus australis
           ATCC 700641]
          Length = 278

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 35/175 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+     TV  R LI R                ++  +L    G 
Sbjct: 61  QLKQHIPAQYIIGSADFCGHVFTVDERVLIPRPE-----------TEELVALILEENDGE 109

Query: 210 QGDLLELYCGNGNF--SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G    SL LAR   +V A ++++ ++E A+ N   N +  V        
Sbjct: 110 PLRVLDIGTGSGAIAISLALARLNWQVQASDVSEEALELAQENA--NQLEAV-------- 159

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPHIL 319
                     +F     +D  +  +  I  +PP   R  L++    ++ + PH+ 
Sbjct: 160 ---------VDFKTSDVLDQIAGSYDLIVSNPPYISRDDLEEVGANVLASEPHLA 205


>gi|319777685|ref|YP_004137336.1| protoporphyrinogen oxidase [Mycoplasma fermentans M64]
 gi|318038760|gb|ADV34959.1| Protoporphyrinogen oxidase [Mycoplasma fermentans M64]
          Length = 237

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 22/136 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIA 252
              M++  L        ++L+L CG+G   L + +     +V  V+I+  +++    N  
Sbjct: 61  TEEMVDIYLKEFAAENQEVLDLCCGSGFIGLAIKKNLRSAKVTLVDISDEAIKQTIENSI 120

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--G 310
            N   N  +    S  FT                    RF  I  +PP    +D ++   
Sbjct: 121 VNFGFNHDLKIYQSDLFTNV----------------KGRFDVIISNPPYLNCNDKSLDWK 164

Query: 311 MVQAYPHILYISCNPD 326
            +   P I    C P+
Sbjct: 165 ALSFEPKIAL--CAPE 178


>gi|307546426|ref|YP_003898905.1| methyltransferase [Halomonas elongata DSM 2581]
 gi|307218450|emb|CBV43720.1| predicted methyltransferase [Halomonas elongata DSM 2581]
          Length = 217

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L+ G G   L  L+R     + VE+   +  A   N+A   + + ++V      F
Sbjct: 71  ARVLDLFAGTGALGLEALSRGAHDAILVELDARASRALEDNLATLGITHARVVNADVMRF 130

Query: 270 TQA 272
             A
Sbjct: 131 LDA 133


>gi|297156192|gb|ADI05904.1| UbiE family methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 280

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G  +  LA       V+ V+ A   +E AR   A   V+N +       + 
Sbjct: 52  RILDIGCGPGTITADLAELVPQGEVIGVDTAPDVLEQARSVAAERGVSNARFAVGDVHKL 111


>gi|294817659|ref|ZP_06776301.1| Putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294322474|gb|EFG04609.1| Putative methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 295

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V        G  L+L CG G  ++ LA    RV  V+I+  ++  A  +        V 
Sbjct: 115 VREVEGLEPGTALDLGCGEGADAVWLAARGWRVTGVDISATALRRAALHAEEAGEAGVA 173


>gi|288931286|ref|YP_003435346.1| tRNA methyltransferase complex GCD14 subunit [Ferroglobus placidus
           DSM 10642]
 gi|288893534|gb|ADC65071.1| tRNA methyltransferase complex GCD14 subunit [Ferroglobus placidus
           DSM 10642]
          Length = 246

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 53/170 (31%), Gaps = 19/170 (11%)

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS---FTQ--- 189
            +    LH  K  I+L    NK        + D+  T       +  I  +   F Q   
Sbjct: 17  EKFEGELHTHKGIIKLEELKNKK-------FGDKVKT--HLGYEFSIIPFNASKFFQLFK 67

Query: 190 --PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVE 245
             P   +   +   +          + +   G+G  +  LA    +  V+ VE  +   +
Sbjct: 68  KGPTPVMPKDIGAVIAYTGLQPDSLIFDAGTGSGVVAAYLAYFNKYGEVVTVEKREDFAK 127

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            AR N     + NV  +   +       ++E +   L   D   +  K  
Sbjct: 128 IARENFKKAGLKNVHQIIGDAIFVADGFKKEFDLVFLDMKDDVEFLPKAW 177


>gi|242399935|ref|YP_002995360.1| Predicted N6-adenine-specific DNA methylase [Thermococcus sibiricus
           MM 739]
 gi|242266329|gb|ACS91011.1| Predicted N6-adenine-specific DNA methylase [Thermococcus sibiricus
           MM 739]
          Length = 365

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
           A I   M+E      +  +G +L+  CG+G   + LA      +++ +E  K  ++ A  
Sbjct: 204 ASIANAMIELA----ELDEGSVLDPMCGSGTILIELALRGYEGKIIGIEKYKKHLKGAMM 259

Query: 250 NIAANH-VNNVKIVRMSSKEFTQAM 273
           N  A   ++ + +++  +   +  +
Sbjct: 260 NALAAGVLDKIDLIQGDATRLSHYL 284


>gi|269839204|ref|YP_003323896.1| methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798]
 gi|269790934|gb|ACZ43074.1| Methyltransferase type 11 [Thermobaculum terrenum ATCC BAA-798]
          Length = 252

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 19/128 (14%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           + +   ++E +  A       +L+L CG G+ +  +A+    V+ ++I+   V  AR   
Sbjct: 17  SAMGADLIELLAPAPGE---RVLDLGCGTGDLAHRIAQRGAEVVGIDISPEMVAMARS-- 71

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                 +++      +++      +  F+               ++  PR  L ++    
Sbjct: 72  ---KYPHIRFEVADVQDYRSDGSFDAVFS----------NAALHWMRKPRQVL-ESVRSA 117

Query: 312 VQAYPHIL 319
           ++     +
Sbjct: 118 LRPGGRFV 125


>gi|89052648|ref|YP_508099.1| Mg-protoporphyrin IX methyl transferase [Jannaschia sp. CCS1]
 gi|88862197|gb|ABD53074.1| Mg-protoporphyrin IX methyl transferase [Jannaschia sp. CCS1]
          Length = 229

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 15/125 (12%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML  +     G    +L+  CG G  + VLA     V+A++I+   ++ A   +  + 
Sbjct: 51  ALMLSRLPKDLSGR--RVLDAGCGTGAMTEVLAARGAEVVAIDISPQLIDIAAKRLPEDL 108

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           V  V                      L   D        I+   P  G   A  G+ +  
Sbjct: 109 VPRVTFQSGDM-----------LSANLGAFDHVMAMDSMIYYTAPDLG--RALAGLSERC 155

Query: 316 PHILY 320
           PHI++
Sbjct: 156 PHIVF 160


>gi|330466469|ref|YP_004404212.1| methyltransferase small [Verrucosispora maris AB-18-032]
 gi|328809440|gb|AEB43612.1| methyltransferase small [Verrucosispora maris AB-18-032]
          Length = 494

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 21/108 (19%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           G    M+   +          L+L  G+G  +L L+ H  +V A ++++ ++  A    A
Sbjct: 142 GATQTMIGAAVRRPVETA---LDLGTGSGVQALHLSTHARQVTATDVSRRALRFAATTAA 198

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N   + +++R                       +   RF  +  +PP
Sbjct: 199 LNG-QDWELLRGDMV-----------------APVAGRRFDLVVSNPP 228


>gi|331696607|ref|YP_004332846.1| type 12 methyltransferase [Pseudonocardia dioxanivorans CB1190]
 gi|326951296|gb|AEA24993.1| Methyltransferase type 12 [Pseudonocardia dioxanivorans CB1190]
          Length = 235

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L  V AA  G++  +L++  G+G +++ LA     V  V+ +  ++ A +       V  
Sbjct: 6   LGRVRAARPGLRPLVLDVGGGSGAWAVPLAAAGCTVTVVDTSPNALAALQRRAREAGVGQ 65

Query: 258 NVKIVRMSSKEFTQ 271
           +V  V+      T 
Sbjct: 66  HVTAVQGDVDALTD 79


>gi|313620910|gb|EFR92088.1| methyltransferase [Listeria innocua FSL S4-378]
          Length = 143

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 30/112 (26%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  +
Sbjct: 3   GKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 62

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                            ++ +  ++ I  +PP           ++A   I++
Sbjct: 63  -----------------NVTANDYQAIISNPP-----------IRAGKRIVH 86


>gi|293433218|ref|ZP_06661646.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           B088]
 gi|331676709|ref|ZP_08377405.1| protein SmtA [Escherichia coli H591]
 gi|291324037|gb|EFE63459.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           B088]
 gi|331075398|gb|EGI46696.1| protein SmtA [Escherichia coli H591]
          Length = 265

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDHVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|291280272|ref|YP_003497107.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Deferribacter desulfuricans SSM1]
 gi|290754974|dbj|BAI81351.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase
           [Deferribacter desulfuricans SSM1]
          Length = 213

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
             +M+  +       + D LLE+  G+G  + + +R    V  VEI    V+ A+ N+  
Sbjct: 62  QPYMVAKMTELLDLNEDDILLEIGTGSGYQAAIASRLCKHVYTVEIIPELVDFAKSNLKK 121

Query: 254 NHVNNVKIVRMS 265
             + NV ++   
Sbjct: 122 AGIKNVTVILGD 133


>gi|258648722|ref|ZP_05736191.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259]
 gi|260851028|gb|EEX70897.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259]
          Length = 395

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 17/127 (13%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            +       V+       G +++L  G G     L + FD  + VE      + A +N+ 
Sbjct: 71  ELAARYKAEVIRRHLPAGGRMVDLTGGFGVDFFYLGQLFDEAIYVEQQADLCQLATHNLP 130

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS-GLDDATVGM 311
              ++N   V      + QAM                     I +DP R  G     V +
Sbjct: 131 LLGLHNAHFVNADGVAYLQAMP----------------PADFILLDPARRDGAGRKVVSL 174

Query: 312 VQAYPHI 318
               P++
Sbjct: 175 ADCEPNV 181


>gi|255523514|ref|ZP_05390482.1| putative RNA methylase [Clostridium carboxidivorans P7]
 gi|296186527|ref|ZP_06854930.1| hypothetical protein CLCAR_1981 [Clostridium carboxidivorans P7]
 gi|255512771|gb|EET89043.1| putative RNA methylase [Clostridium carboxidivorans P7]
 gi|296048974|gb|EFG88405.1| hypothetical protein CLCAR_1981 [Clostridium carboxidivorans P7]
          Length = 539

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 89/236 (37%), Gaps = 19/236 (8%)

Query: 58  LYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS--QSD 115
            Y ++F  ++   + ++Y +    +I   +I  +       +     +++++ T+    +
Sbjct: 247 FYELLFPLESCSNLELNYKVVADKIIKTNIISFLNQCHEGDINTPFWYRVEFKTTDHSRE 306

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
           ++       R LD+        L+++  + + +I+++    K  +C     +   L    
Sbjct: 307 RSEFVKNLSRELDE---ISDGNLKNSPSSYEIEIRIV---EKNNLCSAFIKL-YTLKDNR 359

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDR 233
                + +  S    N  +   ++   +         +++ +CG G   +  A+   F  
Sbjct: 360 FDYREKALAAS---INP-VTAAIVMKNIEKWLKPNAKVIDPFCGAGTMLIERAKLKDFKS 415

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           +  ++I    +  A  N    +VN    +++  ++  +   R+R    + ++   S
Sbjct: 416 LTGIDIFNTGIAYAEVNSYLANVN----IQLKCEDILEFYSRDRFDEMISNMPFES 467


>gi|218235275|ref|YP_002370105.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus B4264]
 gi|218163232|gb|ACK63224.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus B4264]
          Length = 283

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 44/164 (26%)

Query: 164 RDYVDERLTVAGRTLIYRQIEN---------------SFTQPNAGI------NVHM---- 198
           R+ + E    +    I++ +E                SF   N  +         +    
Sbjct: 44  REEITEEQEKSFTEFIHKHVEGIPIQYMIGYEMFYGRSFF-VNEEVLIPRPETEELIVGV 102

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  A   
Sbjct: 103 LERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKALGA 162

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V                      L        +   +  +PP
Sbjct: 163 V-VTFYHGDL---------------LSPFHKTGQKLDVVVSNPP 190


>gi|297619375|ref|YP_003707480.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus
           voltae A3]
 gi|297378352|gb|ADI36507.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus voltae A3]
          Length = 195

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 29/56 (51%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           ++++ CG+G  ++ +A    +  A++  + ++     N+    + N +++   +KE
Sbjct: 36  VIDIGCGSGGMTVEIATIAKKAYAIDNNEDAINTTNANLEKFDIKNCEVISGDAKE 91


>gi|110834614|ref|YP_693473.1| 3-demethylubiquinone-9 3-O-methyltransferase [Alcanivorax
           borkumensis SK2]
 gi|110647725|emb|CAL17201.1| 3-demethylubiquinone-9 3-O-methyltransferase [Alcanivorax
           borkumensis SK2]
          Length = 252

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 46/113 (40%), Gaps = 1/113 (0%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            NS  +P   IN   L ++          ++++ CG G  S  +AR    V  +++ +  
Sbjct: 42  PNSQFRPLHDINPLRLNYIDERVSLPSKKVIDIGCGGGLLSEGMARRGAEVTGIDMGEAP 101

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +  AR +     V  V+ +++ +++  +    + +     ++  H     ++ 
Sbjct: 102 LAVARIHAEHAGVA-VEYLQIPAEQIAEQRAGQYDVVTCLEMLEHVPDPSSVI 153


>gi|328886748|emb|CCA59987.1| possible methyltransferase [Streptomyces venezuelae ATCC 10712]
          Length = 240

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +   V           L+L  G G  +LV A    R  AV+I++ ++  AR N   +   
Sbjct: 43  LAAHVRREELRPGARSLDLCTGTGVLALVAALRGARATAVDISRTAIAVARLNARLHRCR 102

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            ++ +                     D  +   RF  + V+PP
Sbjct: 103 -IRTLCGDL-----------------DGPVAHERFDLVTVNPP 127


>gi|325496859|gb|EGC94718.1| S-adenosylmethionine-dependent methyltransferase [Escherichia
           fergusonii ECD227]
          Length = 265

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDRVLAEMGSQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|323455182|gb|EGB11051.1| hypothetical protein AURANDRAFT_11485 [Aureococcus anophagefferens]
          Length = 367

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 10/135 (7%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
           N    E +  A    +  +LE+  G+G  +++ AR    +V+A+E ++     AR NIAA
Sbjct: 40  NEFYRECLRRAIVPGESVVLEIGTGSGLLAMLAARLGARKVVAIEASRHMAALARKNIAA 99

Query: 254 NHVNNVKIV------RMSSKEFTQAM---RREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           N ++    V       + + E  +A            L D+ +       +  +     L
Sbjct: 100 NGLDGAITVIERLSTELDADEIRRACGLGAGRPYAADLPDVLVSELFGTLLLGESALEYL 159

Query: 305 DDATVGMVQAYPHIL 319
            DA   +V+    ++
Sbjct: 160 RDARERLVRPGCRVV 174


>gi|312112636|ref|YP_003990952.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y4.1MC1]
 gi|311217737|gb|ADP76341.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y4.1MC1]
          Length = 288

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 30/148 (20%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGI------NVHMLEWVLAA-----TKGIQGDLL 214
           +  E + V   T   +     F   N  +         ++E VL        +    D++
Sbjct: 64  HAYEHVPVQHLTGFEQFYGRLFL-VNRDVLIPRPETEELVEGVLTRITQLFPRNTTVDVV 122

Query: 215 ELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++  G+G  ++ LA       V A++I+  +++ A  N      + V  +          
Sbjct: 123 DVGTGSGAIAITLALENPALSVTAIDISAEALQMAEQNAKRLGAD-VAFICGDL------ 175

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP 300
                    L+ +   + +   +  +PP
Sbjct: 176 ---------LQPLIEANRKVDVVVSNPP 194


>gi|304316215|ref|YP_003851360.1| methyltransferase type 11 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777717|gb|ADL68276.1| Methyltransferase type 11 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 211

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 31/57 (54%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + ++  G+G  +L L+++   V+ ++++   ++ A+       +NN+  ++ S ++ 
Sbjct: 44  VADIGTGSGFMALELSKYAREVVGIDVSDEMLKYAKQTAENAGINNIIFLKGSMEQI 100


>gi|291300408|ref|YP_003511686.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290569628|gb|ADD42593.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 264

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +G    M E +   T     D +LEL CG G  ++ LAR   RV AVE+       AR N
Sbjct: 25  SGYPARMYEDLAELTGLKPDDHVLELGCGTGQATVSLARQGYRVTAVELGAGMATVARRN 84

Query: 251 IA 252
           +A
Sbjct: 85  LA 86


>gi|254825704|ref|ZP_05230705.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254991748|ref|ZP_05273938.1| hypothetical protein LmonocytoFSL_00527 [Listeria monocytogenes FSL
           J2-064]
 gi|255520714|ref|ZP_05387951.1| hypothetical protein LmonocFSL_05726 [Listeria monocytogenes FSL
           J1-175]
 gi|293594948|gb|EFG02709.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|328467861|gb|EGF38901.1| hypothetical protein LM1816_08950 [Listeria monocytogenes 1816]
          Length = 201

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 30/112 (26%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  +
Sbjct: 61  GKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 120

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                             + +  ++ I  +PP           ++A   I++
Sbjct: 121 -----------------SVTANDYQAIISNPP-----------IRAGKRIVH 144


>gi|164662627|ref|XP_001732435.1| hypothetical protein MGL_0210 [Malassezia globosa CBS 7966]
 gi|159106338|gb|EDP45221.1| hypothetical protein MGL_0210 [Malassezia globosa CBS 7966]
          Length = 339

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 20/104 (19%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           +E L    RTL YRQ      Q N                     +L++ CG G   +  
Sbjct: 29  EEMLKDEVRTLSYRQA----IQNNP-------------HLFKGKTVLDVGCGTGILCMFA 71

Query: 228 ARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           A+    +V+ V+++   ++ A+  + AN +++ + +V+   ++ 
Sbjct: 72  AKAGAKKVVGVDMSNI-IDQAKVIVKANKLDHIITLVKGKMEDV 114


>gi|254853481|ref|ZP_05242829.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254932471|ref|ZP_05265830.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|300764623|ref|ZP_07074615.1| HemK family modification methylase [Listeria monocytogenes FSL
           N1-017]
 gi|258606853|gb|EEW19461.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293584027|gb|EFF96059.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|300514730|gb|EFK41785.1| HemK family modification methylase [Listeria monocytogenes FSL
           N1-017]
 gi|328476090|gb|EGF46799.1| hypothetical protein LM220_01497 [Listeria monocytogenes 220]
 gi|332310662|gb|EGJ23757.1| Methyltransferase small domain superfamily [Listeria monocytogenes
           str. Scott A]
          Length = 201

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 30/112 (26%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  +
Sbjct: 61  GKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 120

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                             + +  ++ I  +PP           ++A   I++
Sbjct: 121 -----------------SVTANDYQAIISNPP-----------IRAGKRIVH 144


>gi|78777747|ref|YP_394062.1| hypothetical protein Suden_1550 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498287|gb|ABB44827.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 275

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 28/61 (45%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +++          +L++ CG G  ++ LA+    V+A++ +   ++  +       + N+
Sbjct: 48  DFISRMDISEDDTVLDIGCGPGTLAIPLAKMVKEVVAIDFSAQMLQELQAYAKREGITNI 107

Query: 260 K 260
           K
Sbjct: 108 K 108


>gi|46906485|ref|YP_012874.1| hypothetical protein LMOf2365_0264 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|46879749|gb|AAT03051.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 30/112 (26%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  +
Sbjct: 64  GKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 123

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                             + +  ++ I  +PP           ++A   I++
Sbjct: 124 -----------------SVTANDYQAIISNPP-----------IRAGKRIVH 147


>gi|37523221|ref|NP_926598.1| hypothetical protein glr3652 [Gloeobacter violaceus PCC 7421]
 gi|35214224|dbj|BAC91593.1| glr3652 [Gloeobacter violaceus PCC 7421]
          Length = 258

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYN 250
                 +L W           LLEL    G+ ++ LAR F  RV+ VE    SVE AR N
Sbjct: 30  RSATEQLLVWA---DFQPGQTLLELASSFGHSAIDLARRFGVRVVGVEKNPASVERARAN 86

Query: 251 IAANHVNN-VKIVRMS 265
           + A  + + V+IV   
Sbjct: 87  VRAAGLGHLVQIVEGD 102


>gi|311897466|dbj|BAJ29874.1| hypothetical protein KSE_40840 [Kitasatospora setae KM-6054]
          Length = 266

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 199 LEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           L  +L     + G   +L+L  G G  +L LAR    V+AV+     +   R    A   
Sbjct: 28  LYGLLKEKFALDGTQRVLDLGTGTGVLALPLARLVGEVVAVDPEPGMLAEGRKLADAEDT 87

Query: 257 NNVKIVRMSSK 267
            N+  ++  S 
Sbjct: 88  TNITWLQGDST 98


>gi|307354923|ref|YP_003895974.1| type 12 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307158156|gb|ADN37536.1| Methyltransferase type 12 [Methanoplanus petrolearius DSM 11571]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L++  G G  ++ LA     V AVE +       R  IA N + N+ +V    ++   
Sbjct: 67  ILDVGAGPGTIAIPLAGKAAAVTAVEPSPAMAGVLREKIAENGIENITVVEKPWEDVDP 125


>gi|307243181|ref|ZP_07525354.1| methyltransferase domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493442|gb|EFM65422.1| methyltransferase domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 275

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 18/126 (14%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            ++  +  A       +L++  G+G +++ +AR    V   +I+K  ++ AR N  +  +
Sbjct: 45  EVVNRLAEAGILEGASVLDIGGGSGRYAIPMARLAQSVTMTDISKNMLDLARENANSQGI 104

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           +N+   +M             E   L  I   +          P        V   Q   
Sbjct: 105 DNINYEKM-----------VWETADLAKIGWDAKFDLAFASMCP-------AVRTPQGLK 146

Query: 317 HILYIS 322
           +++Y S
Sbjct: 147 NMVYSS 152


>gi|269138633|ref|YP_003295333.1| putative SAM-dependent methyltransferase [Edwardsiella tarda
           EIB202]
 gi|267984293|gb|ACY84122.1| putative SAM-dependent methyltransferase [Edwardsiella tarda
           EIB202]
 gi|304558645|gb|ADM41309.1| methyltransferase RlmI [Edwardsiella tarda FL6-60]
          Length = 398

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 6/129 (4%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
            + A        +L  +   G F++  L      V +V+ ++ +++ AR N+A N ++  
Sbjct: 211 RLAARRFARDAHVLNCFSYTGAFAVSTLMGGCAHVTSVDTSQAALDIARQNVALNGLDLA 270

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD---ATVGMVQA 314
               +R    +  +  R E +   L  +D   +      +     G  D     + +++ 
Sbjct: 271 RADFLRDDVFQLLRRYRDEGKTFNLIVMDPPKFVENKNQLAGACRGYKDINMLALQLLRP 330

Query: 315 YPHILYISC 323
              +L  SC
Sbjct: 331 GGILLTFSC 339


>gi|237745911|ref|ZP_04576391.1| methyltransferase HemK MTase hemK [Oxalobacter formigenes HOxBLS]
 gi|229377262|gb|EEO27353.1| methyltransferase HemK MTase hemK [Oxalobacter formigenes HOxBLS]
          Length = 287

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/205 (20%), Positives = 70/205 (34%), Gaps = 41/205 (20%)

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK 157
           P LR  L   ++    S   ++T   H L D      +  L   L               
Sbjct: 30  PELRILL---EHALGFSRVKLITHSDHVLTDAEANAVSDVLARRLRGEPVAY-------- 78

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             I   R++      V    LI R                +L  +  A     G +++L 
Sbjct: 79  --ITGIREFYGLPFAVTPDVLIPRP------------ETELLVDLALARLPEGGRVVDLG 124

Query: 218 CGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G+G  ++ +A  R   +V A +I+  +++ AR N A+  + N + VR     + +A+  
Sbjct: 125 TGSGAIAVAIAAMRPDAQVWATDISGKALDIARKNAAS-CLKNGQSVRFRQGNWYEALE- 182

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPP 300
                          RF  I  +PP
Sbjct: 183 ------------PGSRFDLIVSNPP 195


>gi|187934189|ref|YP_001887561.1| SAM-dependent methyltransferase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722342|gb|ACD23563.1| SAM-dependent methyltransferase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 40/205 (19%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I LD D V + L + G  LI +     F     G++  +L     A    +  +++L  G
Sbjct: 7   INLDTDEVIDDLQLKGLQLIQKVNGFKF-----GVDAVILS--DFANVKNKYRVIDLCTG 59

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRE 276
            G    +L   +    V  +EI +  V  A  ++  N + + +  ++   K         
Sbjct: 60  TGIIPFLLYGKYNPKEVYGLEIQEEMVNMAEKSVKLNALEDKITFIKEDLKNI------- 112

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-----------GMVQAYPHILYISCNP 325
                LK +D    +F  + V+PP    +   +            ++     ++Y S   
Sbjct: 113 ---EYLKKMD----KFDVVTVNPPYKLNNAGIINPSDKLAIARHEVLCNLEDVIYAS--- 162

Query: 326 DSLCRDLSILSTTHTIERLALFDQF 350
             L +D   +   H  ERLA  D F
Sbjct: 163 KVLLKDNGRMFIVHRPERLA--DIF 185


>gi|121637229|ref|YP_977452.1| putative hemk protein homolog hemK [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224989704|ref|YP_002644391.1| putative HemK protein homolog [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|121492876|emb|CAL71347.1| Probable hemk protein homolog hemK [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224772817|dbj|BAH25623.1| putative HemK protein homolog [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 325

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 13/134 (9%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           TV+   ++       F          +L W  A +   +  +++   G+G  ++ LA+H 
Sbjct: 95  TVSFGPVVLHVGPGVF--VPRPETEAILGWATAQSLPARPLIVDACTGSGALAVALAQHR 152

Query: 232 ------DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                  R++ ++ +  +++ AR N A      V++VR      T  +  E +      +
Sbjct: 153 ANLGLKARIIGIDDSDCALDYARRNAAG---TPVELVRADVT--TPCLLPELDGQVDLMV 207

Query: 286 DIHSYRFKTIFVDP 299
               Y      ++P
Sbjct: 208 SNPPYIPDAAVLEP 221


>gi|327462037|gb|EGF08366.1| rRNA methylase [Streptococcus sanguinis SK1057]
          Length = 183

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDVVVDATMGNGHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +N +++    +   Q
Sbjct: 66  DNAQLILAGHETLDQ 80


>gi|324327151|gb|ADY22411.1| methyltransferase type 11 [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 249

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAAR 248
            N  I    ++ ++   KG    +L+L CG+G+FS     +    V+ V+I+K  +E A+
Sbjct: 25  ANDFIEQPAIKSLILCLKGKS--VLDLGCGDGHFSKYCIENGAKNVVGVDISKNMIERAK 82

Query: 249 YNIAANHVNNVKIVRMSSKE 268
                N  +N++ + +  ++
Sbjct: 83  ---KLNQDDNIEFMCLPMED 99


>gi|314968697|gb|EFT12795.1| methyltransferase small domain protein [Propionibacterium acnes
           HL037PA1]
          Length = 362

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  ++++      AN 
Sbjct: 209 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAIDSTHLTAQANQ 268

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           ++ V                         +DI +     +  +PP     +     T+ M
Sbjct: 269 LDIVTHWCDGL------------------VDIPNESVDVVVTNPPFHRGTAQDHAPTLAM 310

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 311 LADAARVL 318


>gi|312881579|ref|ZP_07741357.1| ribosomal RNA large subunit methyltransferase I [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309370642|gb|EFP98116.1| ribosomal RNA large subunit methyltransferase I [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH  +    ++   N  KI +D       +    +T  Y    +S  Q  
Sbjct: 163 KEGLEECTGVLHGEQPPNSIVIEENGIKIAVD-------IKTGHKTGFYLDQRDSRKQ-- 213

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYN 250
                       A       ++L  +   G F L  +     RV+  ++++P+++ A+ N
Sbjct: 214 ------------AMKYVRDKEVLNCFSYTGGFGLYSMKGGAARVINADVSQPALDLAKSN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
              N+            +          F  L++      +F  + +DPP+ 
Sbjct: 262 AELNN--------FDVSKKKAVFLNADVFKLLREYREQGTKFDVVIMDPPKF 305


>gi|310825738|ref|YP_003958095.1| Methyltransferase type 11 [Eubacterium limosum KIST612]
 gi|308737472|gb|ADO35132.1| Methyltransferase type 11 [Eubacterium limosum KIST612]
          Length = 268

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 200 EWVLAA-----TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           +WV A           G  L++ CG G +++  A+        + ++  ++ A       
Sbjct: 41  DWVAALVKRHGMLPADGAFLDVGCGAGKYTVYFAKKCAEAWGTDFSEEMIKNAEQRAREA 100

Query: 255 HVNNVKIVRMS 265
              N      +
Sbjct: 101 GTGNAFFSCDN 111


>gi|303256679|ref|ZP_07342693.1| ribosomal protein L11 methyltransferase [Burkholderiales bacterium
           1_1_47]
 gi|330999319|ref|ZP_08323036.1| ribosomal protein L11 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|302860170|gb|EFL83247.1| ribosomal protein L11 methyltransferase [Burkholderiales bacterium
           1_1_47]
 gi|329575177|gb|EGG56728.1| ribosomal protein L11 methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 299

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           LEW+       +  +L+  CG+G  ++  A+     +VL  +I   ++EAA YN   N  
Sbjct: 155 LEWLHDHNLEGKS-VLDYGCGSGILAVA-AKKLGASKVLGTDIDPQAIEAADYNAEVNRA 212

Query: 257 N 257
           +
Sbjct: 213 D 213


>gi|300744004|ref|ZP_07073024.1| putative methyltransferase small domain protein [Rothia
           dentocariosa M567]
 gi|300380365|gb|EFJ76928.1| putative methyltransferase small domain protein [Rothia
           dentocariosa M567]
          Length = 209

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 25/128 (19%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +LE V          +L++ CG G  +L LA       V  +++   S+     N  
Sbjct: 47  TAVLLEQVPEPHGKY---MLDIGCGWGPITLSLAMLAPQSEVYGIDVNSRSLSLTEQNAR 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           A  ++NV +                      D    + RF TI+ +PP R G +     +
Sbjct: 104 ALGMHNVSVST-------------------PDEIDPTLRFDTIWSNPPIRVGKEVLHNIL 144

Query: 312 VQAYPHIL 319
           +   P + 
Sbjct: 145 LTWLPRLA 152


>gi|297531577|ref|YP_003672852.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. C56-T3]
 gi|297254829|gb|ADI28275.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. C56-T3]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 18/91 (19%)

Query: 212 DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D++++  G+G  ++ LA       V A +I++ ++  AR N       NV  +       
Sbjct: 120 DVVDVGTGSGAIAVTLALENKALSVTATDISEAALAVARENARRLGA-NVSFLCGDL--- 175

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                       L+ I    +    +  +PP
Sbjct: 176 ------------LQPIMAMGWTVDVVVSNPP 194


>gi|237740337|ref|ZP_04570818.1| methyltransferase [Fusobacterium sp. 2_1_31]
 gi|229422354|gb|EEO37401.1| methyltransferase [Fusobacterium sp. 2_1_31]
          Length = 369

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 19/109 (17%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNI 251
              ++E  +   + I+  ++L++  G+G  S+ +A       V  ++I + ++  A  N 
Sbjct: 167 TEILVEQCIQLMREIEEPNILDIGSGSGAISIAIANELKSSSVTGLDINEDAIRLANENK 226

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             N V NV  ++               F +L +     +++  I  +PP
Sbjct: 227 VLNKVENVNFMKSD------------LFEKLDE----DFKYDLIVSNPP 259


>gi|227548001|ref|ZP_03978050.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079907|gb|EEI17870.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 283

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 17/125 (13%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251
              + +W +    G+    +++L  G+G  ++ +A      RV AVE +  +   AR N 
Sbjct: 97  TEVLADWAVRKLTGVASPVVVDLGTGSGALAIYIAHALDDARVTAVEASATARRYARGNA 156

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               V+ V ++     +              + +D    +   +  +PP   L       
Sbjct: 157 ERLGVD-VTVIAGDMTD-------------PQLLDQMRGQVDLVVSNPPYVPLGQDVGAE 202

Query: 312 VQAYP 316
           V   P
Sbjct: 203 VLHDP 207


>gi|226356211|ref|YP_002785951.1| hypothetical protein Deide_12770 [Deinococcus deserti VCD115]
 gi|226318201|gb|ACO46197.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 392

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 37/192 (19%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIE-----NSFT--QPNAGINVHMLEWVLAATKGI 209
           +T +      + ER+      L             F   Q     N  M+   +    G 
Sbjct: 169 QTGVLWGD--LPERVEFYEDDLQLHFAPMDAQKTGFFLDQ---RDNRRMMRTFVRPGSGF 223

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
               L++Y   G FSL  A+   + +A++  + ++ A      AN V NV +    + E 
Sbjct: 224 ----LDVYSYTGGFSLHAAKEGAKAVALDKDQVALGALEGAARANGV-NVGVRWGDALEQ 278

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
              + +E+             +F  + +DPP           V     I       D   
Sbjct: 279 LAGLEKEK------------RKFSAVVLDPPTLAKRR---DDVPKAKRIF-----TDGAA 318

Query: 330 RDLSILSTTHTI 341
           R L +L     +
Sbjct: 319 RSLRMLEDGGHL 330


>gi|146342484|ref|YP_001207532.1| ribosomal protein L11 methyltransferase (L11 Mtase) [Bradyrhizobium
           sp. ORS278]
 gi|146195290|emb|CAL79315.1| Ribosomal protein L11 methyltransferase (L11 Mtase) [Bradyrhizobium
           sp. ORS278]
          Length = 298

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHV 256
           +L+ VL    G    +L+L  G G  ++  A+   R VL  +I  PSV  AR N   N  
Sbjct: 147 LLDHVLKR--GSPQRVLDLGTGTGVLAIAAAKATRRSVLGSDIDAPSVSVARENARLNGA 204


>gi|114565621|ref|YP_752775.1| SAM-dependent methyltransferases [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114336556|gb|ABI67404.1| SAM-dependent methyltransferases [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 251

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 211 GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
              ++L  GNG  +L+LA      RV  +EI +  ++ AR NIA NH+   + +++   K
Sbjct: 51  KQAVDLGTGNGVIALLLAYRAPSLRVTGIEIQESMIKRARKNIAFNHLEERIDLIQADIK 110

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDP----PRSGLDDATVGMVQAYPHIL 319
              + +  +     + +          + ++P     R  L+     +V+A  +IL
Sbjct: 111 NIKEYLPPQGAELVVSNPPFWKKGEGKLSLNPEKAVARHELEVELADLVRAAAYIL 166


>gi|47564353|ref|ZP_00235398.1| methyltransferase Atu1041 [Bacillus cereus G9241]
 gi|47558505|gb|EAL16828.1| methyltransferase Atu1041 [Bacillus cereus G9241]
          Length = 249

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAAR 248
            N  I    ++ ++   KG    +L+L CG+G+FS     +    V+ V+I+K  +E A+
Sbjct: 25  ANDFIEQPAIKSLILCLKGKS--VLDLGCGDGHFSKYCIENGAKNVVGVDISKNMIERAK 82

Query: 249 YNIAANHVNNVKIVRMSSKE 268
                N  +N++ + +  ++
Sbjct: 83  ---KLNQDDNIEFMCLPMED 99


>gi|315426386|dbj|BAJ48025.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum]
          Length = 640

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                 +L+L CGNG  SL LAR  F  V  ++ ++  ++ AR    A H+  V+  R  
Sbjct: 61  FEKDDSILDLCCGNGRHSLELARRGFRNVTGLDYSEELLKIAREKAEAEHLK-VRFARGD 119

Query: 266 SKEF 269
           ++  
Sbjct: 120 ARSL 123


>gi|270157831|ref|ZP_06186488.1| protein-(glutamine-N5) methyltransferase [Legionella longbeachae
           D-4968]
 gi|289163903|ref|YP_003454041.1| methyltransferase HemK [Legionella longbeachae NSW150]
 gi|269989856|gb|EEZ96110.1| protein-(glutamine-N5) methyltransferase [Legionella longbeachae
           D-4968]
 gi|288857076|emb|CBJ10891.1| putative methyltransferase HemK [Legionella longbeachae NSW150]
          Length = 268

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
              ++   L          +LEL  G+G  +L LA+     R++A +I++ +++ A+ N 
Sbjct: 87  TELLVALALEFIPDQPDTHILELGTGSGAIALALAKERPSWRIVACDISEDALKVAKENA 146

Query: 252 AANHVNNVKIVRMS 265
             N + N+      
Sbjct: 147 QNNKIENINFFLSD 160


>gi|269218655|ref|ZP_06162509.1| RNA methyltransferase, RsmD family [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211766|gb|EEZ78106.1| RNA methyltransferase, RsmD family [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 185

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 16/108 (14%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+LY G+G   L   +R    V  VE ++ + E  R N  A ++   K+  M  +    
Sbjct: 47  VLDLYSGSGALGLEAASRGAAFVECVESSRKAAELIRANARALNLR-AKVSCMRVE---- 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                     L+  D     F  +F+DPP +  ++    ++   P +L
Sbjct: 102 ----------LRLADPSQTAFDVVFLDPPYNLDEERLAAVLARLPGVL 139


>gi|262404881|ref|ZP_06081435.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. RC586]
 gi|262348965|gb|EEY98104.1| ribosomal RNA small subunit methyltransferase D [Vibrio sp. RC586]
          Length = 169

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       +   L+++ G+G      A R  ++V  +E+   + +  + N+ 
Sbjct: 16  VKETLFNWLAQEVP--KARCLDIFSGSGGLGFECASRQANQVTMLELNPLAFQQLKTNVQ 73

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 74  SLKAENIELIHTDALTFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 118

Query: 312 VQ-----AYPHILYISC 323
           ++     A   ++YI C
Sbjct: 119 LEQNGWLAPQAMIYIEC 135


>gi|291286949|ref|YP_003503765.1| putative RNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884109|gb|ADD67809.1| putative RNA methylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 398

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 5/128 (3%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            ++A       ++L ++   G FSL   A     V +++I+KP++EA   N   N     
Sbjct: 217 RLIAGKLSKGLNVLNVFAYTGGFSLYAAAGGAKSVASLDISKPALEACGDNFRLNGFRTP 276

Query: 260 KI-VRMSSKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDATVGMVQAY 315
              +   + E  + +R+  E   +  +D  S+   +            ++   V +++  
Sbjct: 277 HRLICGDAFEEMEKLRKNGEKFGMVIVDPPSFARKQSDVNGAFKAYEKVNRIAVNLIEKG 336

Query: 316 PHILYISC 323
             +   SC
Sbjct: 337 GILAAASC 344


>gi|225075480|ref|ZP_03718679.1| hypothetical protein NEIFLAOT_00485 [Neisseria flavescens
           NRL30031/H210]
 gi|224953199|gb|EEG34408.1| hypothetical protein NEIFLAOT_00485 [Neisseria flavescens
           NRL30031/H210]
          Length = 190

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 64/175 (36%), Gaps = 31/175 (17%)

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
              +N+ +I   +    +    +   L  R   +S       +   +  W+     G   
Sbjct: 7   TKHSNQVRIIGGQCRGRKLSFASADGL--RPTPDS-------VREKLFNWLGQDLTGKT- 56

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L+ G+G   +  ++R+  +V+ V+  + +V+  + NI    +   +IV        
Sbjct: 57  -VLDLFSGSGALGMEAVSRNAAKVVMVDNYRQTVQTLQKNIRELSLKQAEIVCSD----- 110

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA----TVGMVQAYPHILYI 321
                      +  +   S +F  +F+DPP +  D       +        ++YI
Sbjct: 111 ----------GMAYLTRPSEKFDVVFLDPPFAWEDWQNLFIRLQSHLKNGAMVYI 155


>gi|239631336|ref|ZP_04674367.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066634|ref|YP_003788657.1| putative O-methyltransferase [Lactobacillus casei str. Zhang]
 gi|239525801|gb|EEQ64802.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439041|gb|ADK18807.1| Predicted O-methyltransferase [Lactobacillus casei str. Zhang]
          Length = 247

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A       +++L  GNG   L LAR    +V  VE+     + A+ ++  N + NV +  
Sbjct: 42  AQVKRHSRVVDLAAGNGAVGLFLARDTDQQVTMVELQPRLADMAKRSVELNQLQNVTVQV 101

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
               + TQ + ++                  +  +PP   +   ++
Sbjct: 102 GDLADATQMVAKD--------------SVDIVTCNPPYFKVSSQSI 133


>gi|198283615|ref|YP_002219936.1| ubiquinone biosynthesis O-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667620|ref|YP_002426243.1| 3-demethylubiquinone-9 3-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248136|gb|ACH83729.1| ubiquinone biosynthesis O-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519833|gb|ACK80419.1| 3-demethylubiquinone-9 3-methyltransferase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 235

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L+++     G+ G  +L++  G G  +  +AR    V  +++A+  ++ AR +
Sbjct: 29  HEINPLRLDFIARGCGGLAGKKVLDVGTGGGLLAEAMARQGAEVTGIDLAEDGLDVARAH 88

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
             ANH+ ++   +++ ++         +     ++  H      +     R
Sbjct: 89  ADANHL-HIDYRQIAVEDLATEKPEYYDVVTCMEMLEHVPDPAAVVDACAR 138


>gi|327470441|gb|EGF15897.1| rRNA methylase [Streptococcus sanguinis SK330]
          Length = 183

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDIVVDATMGNGHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +N +++    +   Q
Sbjct: 66  DNAQLILAGHETLDQ 80


>gi|320582562|gb|EFW96779.1| Trans-aconitate methyltransferase [Pichia angusta DL-1]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LE +L+  +G    LL++ CG G  +   +R+F   + V+ ++  +   +   ++N +  
Sbjct: 26  LELILSYHQGQTNRLLDVGCGTGQVTFPFSRYFTTSIGVDPSEGMISRCKAKSSSNQL-- 83

Query: 259 VKIVRMSSKEF 269
            +  +  +++ 
Sbjct: 84  -EFYQGKAEDL 93


>gi|306826342|ref|ZP_07459675.1| methyltransferase small domain protein [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304431455|gb|EFM34438.1| methyltransferase small domain protein [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 196

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 196 VHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
            +++   + A        ++L+   G G  +L LA+    V  V+I++  +E AR     
Sbjct: 21  ANLICQAVEAQIDFLSDKEILDFGGGTGLLALPLAKQAQSVTLVDISEKMLEQARLKAEQ 80

Query: 254 NHVNNVKIVRMS-----SKEFTQAMRREREFNRLKDIDIHSYRF 292
             + N++I+         ++    +   R  + + D+D     F
Sbjct: 81  QDIKNIQILEQDLLANPLEQQFDLIVVSRVLHHMPDLDATLAMF 124


>gi|296268874|ref|YP_003651506.1| HemK family modification methylase [Thermobispora bispora DSM
           43833]
 gi|296091661|gb|ADG87613.1| modification methylase, HemK family [Thermobispora bispora DSM
           43833]
          Length = 284

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 48/155 (30%), Gaps = 13/155 (8%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLA---ATKGIQGDLLELYCGNGNFSLVLARH 230
             R L        F          M  W +            +++L  G+G  +L +A+ 
Sbjct: 75  YFRYLSLEVGPGVF--VPRPETEVMTGWAIDRLREMDVASPIVVDLGTGSGAIALSIAQE 132

Query: 231 FD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF----NRLKD 284
               +V AVEI   +   A+ N+  +    V +      +    +  + +          
Sbjct: 133 VALAQVHAVEIDPVAYSWAKKNVLEHGQGRVFLHPEDLADCLPELNGQVDLVISNPPYIP 192

Query: 285 IDIHSYRFKTIFVDPPRS--GLDDATVGMVQAYPH 317
                   +    DP R+  G  +  +G ++A   
Sbjct: 193 PGEVPRDPEVRDYDPSRALYGSGEDGLGEIRAVER 227


>gi|168187542|ref|ZP_02622177.1| methyltransferase domain family [Clostridium botulinum C str.
           Eklund]
 gi|169294581|gb|EDS76714.1| methyltransferase domain family [Clostridium botulinum C str.
           Eklund]
          Length = 258

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 34/58 (58%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +LEL CG G F++ +A   ++ + ++ ++ +++ A+       ++N + ++ S+ +F
Sbjct: 55  KVLELGCGGGRFAMDIAPLVNKYVGIDYSEKAIDIAQKQSEKLCLSNTEFIQGSAVDF 112


>gi|170722004|ref|YP_001749692.1| type 11 methyltransferase [Pseudomonas putida W619]
 gi|169760007|gb|ACA73323.1| Methyltransferase type 11 [Pseudomonas putida W619]
          Length = 270

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 193 GINVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           G  + ++   LA    ++ D  +L++  GNGN +L  AR   RV++ +     ++ A   
Sbjct: 27  GTTLQLVGERLAEACDLRWDEQVLDVAAGNGNATLAAARRGCRVISTDYVPELLKRAEDR 86

Query: 251 IAANHVNNVKIVRMSSKEF 269
             A H+ NV+     ++  
Sbjct: 87  ARAEHL-NVEFQVADAEAL 104


>gi|115903815|ref|XP_790531.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115973019|ref|XP_001192024.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 351

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 21/113 (18%)

Query: 179 IYRQIENSF------TQPNAGINVHMLEWVLAATKGIQG-------------DLLELYCG 219
            +R +   F       Q    +N   +  +       +G              ++++ CG
Sbjct: 105 KFRILSQQFWKESGDFQALHSMNDLRVPLIRDTLLNQKGGANRSNTRPLHGATIVDVGCG 164

Query: 220 NGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFT 270
            G  +  LAR    V+ V+    ++E A+++++ +     NVK +  ++++  
Sbjct: 165 GGILAEPLARLGATVIGVDATPENIEVAQHHVSHDPTIRGNVKYICGTAEDLV 217


>gi|187479541|ref|YP_787566.1| protein-L-isoaspartate O-methyltransferase [Bordetella avium 197N]
 gi|115424128|emb|CAJ50681.1| protein-L-isoaspartate O-methyltransferase [Bordetella avium 197N]
          Length = 226

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                      +LE+  G+G  + +LA     V  VEI    V  A+ N+  N+V +VK+
Sbjct: 81  AQELQLQAADSVLEIGTGSGYQAALLAHLAREVTTVEIDSRLVAFAQQNLQLNNVTDVKV 140

Query: 262 VRMS 265
               
Sbjct: 141 ETGD 144


>gi|90581289|ref|ZP_01237086.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14]
 gi|90437528|gb|EAS62722.1| ribosomal protein L11 methyltransferase [Vibrio angustum S14]
          Length = 294

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L +       +++  CG+G  ++  L     +V+ ++I   ++ A+R N   N V+
Sbjct: 150 LEW-LDSQDLTGKTVIDFGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAERNGVS 208

Query: 258 N 258
           +
Sbjct: 209 D 209


>gi|307565044|ref|ZP_07627557.1| ribosomal protein L11 methyltransferase [Prevotella amnii CRIS
           21A-A]
 gi|307346213|gb|EFN91537.1| ribosomal protein L11 methyltransferase [Prevotella amnii CRIS
           21A-A]
          Length = 289

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARY 249
           N      ++E ++         +L+  CG G   ++ A+     V   +I + SV+ A +
Sbjct: 134 NHETTQMIVEKLIDLNL-KDKRVLDCGCGTGILGIISAKCGATEVFGYDIDEWSVKNAIH 192

Query: 250 NIAANHVN 257
           N   N V 
Sbjct: 193 NAEINDVK 200


>gi|302546575|ref|ZP_07298917.1| putative hydrolase, NUDIX family [Streptomyces hygroscopicus ATCC
           53653]
 gi|302464193|gb|EFL27286.1| putative hydrolase, NUDIX family [Streptomyces himastatinicus ATCC
           53653]
          Length = 370

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +       +     G   D+L+L CG G+ + + A    RV  V+ +    E AR   
Sbjct: 28  PAVREAWAARLRQWLPGRPCDVLDLGCGTGSLARLAAEQGHRVTGVDRSPRMAERAR--A 85

Query: 252 AANHVNNVKIVRMSSK 267
                 +  ++   + 
Sbjct: 86  KLVG-TDATVLVGDAA 100


>gi|312115448|ref|YP_004013044.1| ubiquinone biosynthesis O-methyltransferase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220577|gb|ADP71945.1| ubiquinone biosynthesis O-methyltransferase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 252

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D++++ CG G  S  LAR    V  ++  + SV  AR + A      V    +++++  
Sbjct: 71  DVVDIGCGGGILSEPLARLGGTVTGIDPVEESVGVARAHAAKLGAP-VTYRNVTAEDLA 128


>gi|238810251|dbj|BAH70041.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 241

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 22/136 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIA 252
              M++  L        ++L+L CG+G   L + +     +V  V+I+  +++    N  
Sbjct: 65  TEEMVDIYLKEFAAENQEVLDLCCGSGFIGLAIKKNLRSAKVTLVDISDEAIKQTIENSI 124

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--G 310
            N   N  +    S  FT                    RF  I  +PP    +D ++   
Sbjct: 125 VNFGFNHDLKIYQSDLFTNV----------------KGRFDVIISNPPYLNCNDKSLDWK 168

Query: 311 MVQAYPHILYISCNPD 326
            +   P I    C P+
Sbjct: 169 ALSFEPKIAL--CAPE 182


>gi|226310650|ref|YP_002770544.1| hypothetical protein BBR47_10630 [Brevibacillus brevis NBRC 100599]
 gi|226093598|dbj|BAH42040.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 253

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN- 257
           +E+ L   K   G +L+L CG G  S+ +A+    V  +++++  +  A+       V  
Sbjct: 22  VEFYLEQAKLAGGKVLDLACGTGRISIPMAQAGIDVTGIDLSQDMLARAQVKAEEQGVTS 81

Query: 258 NVKIVRMSSKEF 269
            +K+++   + F
Sbjct: 82  GLKLLQGDMRAF 93


>gi|113868192|ref|YP_726681.1| SAM-dependent methyltransferase [Ralstonia eutropha H16]
 gi|113526968|emb|CAJ93313.1| SAM-dependent methyltransferase [Ralstonia eutropha H16]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 212 DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L+L CG G+ S+  A        V+A +I+   +E  R N A   + N++ +  +  E
Sbjct: 50  RVLDLACGAGSQSIQAAMRVGAGGEVVASDISGTMLEHVRRNAARAGLQNIETLECAVDE 109

Query: 269 FTQAMR 274
             + + 
Sbjct: 110 LDETLA 115


>gi|21219356|ref|NP_625135.1| methyltransferase [Streptomyces coelicolor A3(2)]
 gi|256789604|ref|ZP_05528035.1| methyltransferase [Streptomyces lividans TK24]
 gi|289773493|ref|ZP_06532871.1| methyltransferase [Streptomyces lividans TK24]
 gi|5459239|emb|CAB48912.1| putative methyltransferase [Streptomyces coelicolor A3(2)]
 gi|289703692|gb|EFD71121.1| methyltransferase [Streptomyces lividans TK24]
          Length = 215

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           V  A     G  L+L CG G  ++ LA    RV  V+I+  ++E A  +     V +
Sbjct: 34  VQEAGGLAPGTALDLGCGEGADAVWLASRGWRVTGVDISATALERAAGHADGAGVGD 90


>gi|330835237|ref|YP_004409965.1| methyltransferase type 11 [Metallosphaera cuprina Ar-4]
 gi|329567376|gb|AEB95481.1| methyltransferase type 11 [Metallosphaera cuprina Ar-4]
          Length = 246

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 40/203 (19%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLE-------WV-----LAATKGIQGDLLELYCGNGN 222
              +I++  E+ F          M++       W      L+    +   +L++ CG G 
Sbjct: 3   NNEIIFKIFESDFY------ISEMVKIWDEGNKWANWIKQLSQRYNLGKTVLDVPCGVGR 56

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER---EF 279
            S  L      V  ++I++  +E A+ N     V   K V+   +  +  ++ E+     
Sbjct: 57  VSYFLVNEGFNVTGIDISERMLEIAKKN-----VTGAKFVKGDMRRLSDTVKDEKYDIVL 111

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTH 339
           N    +  ++       +   R+      +  + +  +++Y          +L  +  ++
Sbjct: 112 NLFNSLGYYNDEDDMDILFSIRTVTKGMAIVNLDSRDYLIY----------NLPDVRYSY 161

Query: 340 TIERLALFDQ--F-PYTRHMECG 359
               + + D   F P T  +E  
Sbjct: 162 VPPYM-VVDISRFEPTTSRVEVV 183


>gi|326386658|ref|ZP_08208280.1| SAM-dependent methyltransferase [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208973|gb|EGD59768.1| SAM-dependent methyltransferase [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 24/117 (20%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQ 271
           L L+   G  +L L+R F  V  V+ +K SV  AR N A + + +  V+ +   + +F  
Sbjct: 128 LNLFGYTGVGTLSLSR-FGPVTHVDASKKSVTQARANAALSGMEDRPVRWIVDDAAKF-- 184

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------LDDATVGMVQAYPHIL 319
                RE  R         R+  I +DPP+ G         L++   G++     +L
Sbjct: 185 ---AAREVRR-------GRRYDGIILDPPKFGRGPEGEVWRLEEGLPGLIADCARLL 231


>gi|314959626|gb|EFT03728.1| methyltransferase small domain protein [Propionibacterium acnes
           HL002PA1]
          Length = 359

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  ++++      AN 
Sbjct: 206 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAIDSTHLTAQANQ 265

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           ++ V                         +DI +     +  +PP     +     T+ M
Sbjct: 266 LDIVTHWCDGL------------------VDIPNESVDVVVTNPPFHRGTAQDHAPTLAM 307

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 308 LADAARVL 315


>gi|331240770|ref|XP_003333035.1| Met-10+ protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309312025|gb|EFP88616.1| Met-10+ protein [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 458

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 10/138 (7%)

Query: 168 DERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           D  +T+      YR     F++   N  ++      +L++       +++ + G G F++
Sbjct: 218 DYTVTLWQSGCRYRF---DFSKVYYNPRLSTE--HDLLSSMIEKDEVVVDAFAGVGPFAM 272

Query: 226 VLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS--KEFTQAMRREREFNRL 282
             A +    VLA ++   SVEA   N+  N +     V      ++  +A+R        
Sbjct: 273 RAAANRKAWVLASDLNPASVEALETNVRLNKLQGRVAVSGGDGREKIREAVRTLWLDKPF 332

Query: 283 KDIDIHSYRFKTIFVDPP 300
           K  +          ++ P
Sbjct: 333 KTPNSSPLLPDHFIINLP 350


>gi|309810081|ref|ZP_07703927.1| methyltransferase small domain protein [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169580|gb|EFO71627.1| methyltransferase small domain protein [Lactobacillus iners SPIN
           2503V10-D]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I G++L++  G G   L  A+     RV  +++ + ++  A+ N   N ++NV I    
Sbjct: 60  EISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFSSD 119

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                        +  L D +    +F  I  +PP          ++Q    
Sbjct: 120 C------------YRNLDDQE----QFGLILTNPPIRAGKQVVDDILQNAKK 155


>gi|305662464|ref|YP_003858752.1| tRNA (guanine-N(2)-)-methyltransferase [Ignisphaera aggregans DSM
           17230]
 gi|304377033|gb|ADM26872.1| tRNA (guanine-N(2)-)-methyltransferase [Ignisphaera aggregans DSM
           17230]
          Length = 401

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 27/164 (16%)

Query: 187 FTQP----NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-----RVLAV 237
           F  P    N  I V  +  + +     +  +L+     G   + +A          V   
Sbjct: 41  FYNPLMVENRDIAVLTVRAMNSIVSKNRIVVLDPLAATGVRGIRIALEARNSKDIEVFMG 100

Query: 238 EIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +I+K +++  ++N   N++ +NV +  M + E+   M R        DID +      I 
Sbjct: 101 DISKEAIDLMKFNAKLNNLSDNVHVYWMDANEYMHWMVRNGYSLDYIDIDPYGSPIDFI- 159

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHT 340
                     + +  +     I   S        DL++L   + 
Sbjct: 160 ---------SSALLTISKGGIIAITST-------DLAVLEGKYR 187


>gi|20806671|ref|NP_621842.1| rRNA or tRNA methylase [Thermoanaerobacter tengcongensis MB4]
 gi|20515121|gb|AAM23446.1| predicted rRNA or tRNA methylase [Thermoanaerobacter tengcongensis
           MB4]
          Length = 285

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 82/219 (37%), Gaps = 42/219 (19%)

Query: 85  ALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHA 144
           AL  + + ++   P L ++L     L S S +     +  +  +    E   R    +  
Sbjct: 14  ALGAKELESVCPNPRLESEL-----LLSHSLRIDRVKLAIKRDEVLKEEELERFLKYIEK 68

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
           RK +I       K        YVDER+ +                        ++E  L 
Sbjct: 69  RKSRIPYQYIVKKQHFMGFEFYVDERVLIPRPE-----------------TEILVEEALK 111

Query: 205 ATKGIQGDL-LELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             K   GDL L++  G+G  ++ +A+ F   +V AV++++ ++E A+YN     V     
Sbjct: 112 RMK--SGDLILDIGTGSGAIAISIAKLFPDCKVYAVDVSEEALEVAKYNAEKLGV----- 164

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +++      +   F+ +        +F  I  +PP
Sbjct: 165 ----AEKII--FIKSDIFSNIP----QDVKFDLIVSNPP 193


>gi|107102668|ref|ZP_01366586.1| hypothetical protein PaerPA_01003733 [Pseudomonas aeruginosa PACS2]
          Length = 253

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 29/64 (45%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  +L+L CG G+ S  +A     V+A +++   +     + A   + N++  +  ++ 
Sbjct: 42  PEARVLDLGCGAGHVSFQVAALAGEVVAYDLSAEMLAVVAQSAAERGMANIRTEQGKAES 101

Query: 269 FTQA 272
              A
Sbjct: 102 LPFA 105


>gi|167037800|ref|YP_001665378.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116219|ref|YP_004186378.1| 50S ribosomal protein L11 methyltransferase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226710124|sp|B0KA79|PRMA_THEP3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166856634|gb|ABY95042.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929310|gb|ADV79995.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 308

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L      +  + ++ CG+G  S+  ++     V A +I + SVE AR N+  
Sbjct: 159 TTKMCLEFLEDIVMPESIVFDVGCGSGILSITSSKLGAKEVYAADIDEVSVEVARQNVEL 218

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           N++ NVK+ +              EF    DI + +     I 
Sbjct: 219 NNLQNVKVFKSDL---------LSEFRGKADIIVANIIADVII 252


>gi|328946868|gb|EGG41005.1| rRNA methylase [Streptococcus sanguinis SK1087]
          Length = 183

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDIVVDATMGNGHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAKAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +N +++    +   Q
Sbjct: 66  DNAQLILAGHETLDQ 80


>gi|327483044|gb|AEA77451.1| Methyltransferase [Vibrio cholerae LMA3894-4]
          Length = 169

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 52/137 (37%), Gaps = 24/137 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+           L+L+ G+G      A R  ++V  +E+   +    + N+ 
Sbjct: 16  VKETLFNWLAQEVPN--ARCLDLFAGSGGLGFECASRQANQVTMLELNPLAFLQLKTNVQ 73

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +    N++++   +  F +                    +  +F+DPP R GL   T  +
Sbjct: 74  SLKAENIELIHTDALAFLRQ---------------SGKPYDVVFIDPPFRQGLLQETTQL 118

Query: 312 VQ-----AYPHILYISC 323
           ++     A   ++YI C
Sbjct: 119 LEQNGWLAPQAMIYIEC 135


>gi|317125569|ref|YP_004099681.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Intrasporangium calvum DSM 43043]
 gi|315589657|gb|ADU48954.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Intrasporangium calvum DSM 43043]
          Length = 291

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 25/135 (18%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG------DLLELYCGNGNFSLVL 227
             RTL        F          ++E  LA    + G       L++L  G+G  +L +
Sbjct: 81  PFRTLTLHVGPGVF--VPRPETEVVVELALAEVDRLLGTRPSGIRLVDLCSGSGAIALAV 138

Query: 228 ARHFDRVL--AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
                RV   A+E++  +V  A  N     ++ V I++  + E                I
Sbjct: 139 KTERPRVHVRAIELSGDAVAWATANRDRLGLD-VAILQGDATE--------------PAI 183

Query: 286 DIHSYRFKTIFVDPP 300
              S     +  +PP
Sbjct: 184 PDWSGSVDLVTANPP 198


>gi|310826525|ref|YP_003958882.1| ribosomal protein L11 methyltransferase [Eubacterium limosum
           KIST612]
 gi|308738259|gb|ADO35919.1| ribosomal protein L11 methyltransferase [Eubacterium limosum
           KIST612]
          Length = 314

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              +    L         +L++ CG G  S++        V+ V+    +V+ AR NIA 
Sbjct: 160 TTQLCVTKLEEYIRPDDMVLDIGCGTGILSIIAGELGCRHVIGVDFDPVAVKVARENIAL 219

Query: 254 NHVNN 258
           NH+ +
Sbjct: 220 NHMED 224


>gi|308480358|ref|XP_003102386.1| hypothetical protein CRE_04935 [Caenorhabditis remanei]
 gi|308262052|gb|EFP06005.1| hypothetical protein CRE_04935 [Caenorhabditis remanei]
          Length = 460

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 213 LLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKE 268
           + +  CG G F L   L +   RV+A ++   SV+  + N+A N +  + ++I  M +K+
Sbjct: 237 VYDACCGIGPFVLPATLKKKPRRVMANDLNPESVKWLKVNVALNKIKDDRIEIHNMDAKQ 296

Query: 269 FTQAMRREREFNRLKD 284
           F +          +K+
Sbjct: 297 FIKENIANDVIRLMKE 312


>gi|302307271|ref|NP_983897.2| ADL199Wp [Ashbya gossypii ATCC 10895]
 gi|299788920|gb|AAS51721.2| ADL199Wp [Ashbya gossypii ATCC 10895]
          Length = 425

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 11/130 (8%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARY 249
           +  N+   + +L     + G D+++LY G G F+L  LAR    V   E+   S E  R 
Sbjct: 237 SRGNIKEKKRILDTYPDVAGRDVVDLYAGIGYFTLSYLARGARSVYCFELNPWSFEGLRR 296

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT- 308
            +A N           S E   A        RL   D+         +   R G   A  
Sbjct: 297 GLAVNAYPGSCYAYNESNESAPA--------RLAGRDLDVRHINLGLLPSSRPGWGIAMG 348

Query: 309 VGMVQAYPHI 318
           + +      I
Sbjct: 349 LALAHGCRPI 358


>gi|169628387|ref|YP_001702036.1| hypothetical protein MAB_1294c [Mycobacterium abscessus ATCC 19977]
 gi|169240354|emb|CAM61382.1| Conserved hypothetical protein (methytransferase?) [Mycobacterium
           abscessus]
          Length = 198

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N+H    VL        D+L++ CG G  +  LA    RV+ ++  +PS+  AR   A  
Sbjct: 10  NIHYQREVLRRVPAHATDVLDVGCGIGMLTRELAPLAQRVVGIDPHEPSLRIAR---AET 66

Query: 255 HVNNVKIVRMS 265
             +NV+ VR S
Sbjct: 67  SASNVEYVRGS 77


>gi|167645559|ref|YP_001683222.1| ribosomal L11 methyltransferase [Caulobacter sp. K31]
 gi|254782837|sp|B0T1G7|PRMA_CAUSK RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|167347989|gb|ABZ70724.1| ribosomal L11 methyltransferase [Caulobacter sp. K31]
          Length = 288

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRV-LAVEIAKPSVEAARYNIAANHVNNVKIVRMS---S 266
             +L++  G G  ++  AR   R+ +  +I +PSV  ++ N   N   N K V  S    
Sbjct: 151 KKVLDVGAGTGLLAIAAARTGSRIAVGTDIDRPSVRISKENAKVNRA-NAKFVHASGLGH 209

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL---YIS 322
           +  T     +  F  +    + S          P  G      G+++    ++   Y+S
Sbjct: 210 RLVTDNAPYDLVFANILARPLISLAQDIKTALVP--GGTVILSGLLRTQERMVKAAYVS 266


>gi|118465770|ref|YP_882143.1| thiopurine S-methyltransferase [Mycobacterium avium 104]
 gi|118167057|gb|ABK67954.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium avium 104]
          Length = 191

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A      G  L+L CG G  ++ LA    RVL ++++  ++  AR       V   +  R
Sbjct: 34  ADVFPAAGRALDLACGQGTAAVWLALRGLRVLGLDVSPVAIGQARDLARRAGVG--ERCR 91

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
               +  + +      + +        R     V+    G
Sbjct: 92  FDVADLDRGLPVGPPADVIVCCKFRDRRLDRAIVERLAPG 131


>gi|115375167|ref|ZP_01462434.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367818|gb|EAU66786.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 333

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 31/145 (21%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANH--VN 257
           W+    +G+   +L L+     F +V  A    RVL V+ ++  ++    N   N   V+
Sbjct: 152 WLRGQVQGLT--VLNLFSYTCAFGVVATAGGAKRVLNVDTSRRVLDWGEENARLNGQAVD 209

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--------RSGLDDATV 309
               V                F+ L  +     RF  +  DPP        R        
Sbjct: 210 RYDYVAGDV------------FDWLGRLAKKGERFDVVISDPPSFSTTRSTRFSAARDYP 257

Query: 310 GMVQAYPHIL------YISCNPDSL 328
            + +A   ++         CN   L
Sbjct: 258 LLAEAAARVVAPGGRLVACCNLAPL 282


>gi|41407578|ref|NP_960414.1| hypothetical protein MAP1480 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395931|gb|AAS03797.1| hypothetical protein MAP_1480 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 193

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A      G  L+L CG G  ++ LA    RVL ++++  ++  AR       V   +  R
Sbjct: 36  ADVFPAAGRALDLACGQGTAAVWLALRGLRVLGLDVSPVAIGQARDLARRAGVG--ERCR 93

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
               +  + +      + +        R     V+    G
Sbjct: 94  FDVADLDRGLPVGPPADVIVCCKFRDRRLDRAIVERLAPG 133


>gi|21226832|ref|NP_632754.1| SAM-dependent methyltransferase [Methanosarcina mazei Go1]
 gi|20905132|gb|AAM30426.1| SAM-dependent methyltransferases [Methanosarcina mazei Go1]
          Length = 243

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARY 249
           +G+   ++  VL   KG    +L++ CG G  ++ LA++    +V  +++       A  
Sbjct: 78  SGVRGKVIPSVLPEIKGET--ILDIGCGFGTLTMELAKNNPESQVYGIDLHDSLTGQAEM 135

Query: 250 NIAANHVNNVKIVRMSS------KEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           N     + NV+    S+      K+   A+      + L+DI    +  K + 
Sbjct: 136 NAEVLGLPNVEFRTGSAYALPFEKDSIDAVTCFLMLHHLEDIKFALFEIKRVL 188


>gi|67468059|ref|XP_650095.1| Met-10+-like protein [Entamoeba histolytica HM-1:IMSS]
 gi|56466649|gb|EAL44708.1| Met-10+-like protein [Entamoeba histolytica HM-1:IMSS]
          Length = 382

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L + + G G F++  A    +V A ++   +V+  R N   N+   ++   M ++++ + 
Sbjct: 218 LCDAFAGVGPFAIPAALKGVKVYANDLNPTAVKYMRINA-VNNKTTIECDNMDARDYLRK 276

Query: 273 MRRER 277
           +  E+
Sbjct: 277 IVLEK 281


>gi|313763702|gb|EFS35066.1| methyltransferase small domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313816981|gb|EFS54695.1| methyltransferase small domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313829783|gb|EFS67497.1| methyltransferase small domain protein [Propionibacterium acnes
           HL063PA2]
 gi|314916544|gb|EFS80375.1| methyltransferase small domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314921003|gb|EFS84834.1| methyltransferase small domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314932406|gb|EFS96237.1| methyltransferase small domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956715|gb|EFT00967.1| methyltransferase small domain protein [Propionibacterium acnes
           HL027PA1]
 gi|315100177|gb|EFT72153.1| methyltransferase small domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102499|gb|EFT74475.1| methyltransferase small domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109582|gb|EFT81558.1| methyltransferase small domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327455823|gb|EGF02478.1| methyltransferase small domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327457971|gb|EGF04626.1| methyltransferase small domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757138|gb|EGF70754.1| methyltransferase small domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757517|gb|EGF71133.1| methyltransferase small domain protein [Propionibacterium acnes
           HL025PA2]
          Length = 362

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  ++++      AN 
Sbjct: 209 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAIDSTHLTAQANQ 268

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           ++ V                         +DI +     +  +PP     +     T+ M
Sbjct: 269 LDIVTHWCDGL------------------VDIPNESVDVVVTNPPFHRGTAQDHAPTLAM 310

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 311 LADAARVL 318


>gi|310823115|ref|YP_003955473.1| hypothetical protein STAUR_5885 [Stigmatella aurantiaca DW4/3-1]
 gi|309396187|gb|ADO73646.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 325

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 31/145 (21%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANH--VN 257
           W+    +G+   +L L+     F +V  A    RVL V+ ++  ++    N   N   V+
Sbjct: 144 WLRGQVQGLT--VLNLFSYTCAFGVVATAGGAKRVLNVDTSRRVLDWGEENARLNGQAVD 201

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--------RSGLDDATV 309
               V                F+ L  +     RF  +  DPP        R        
Sbjct: 202 RYDYVAGDV------------FDWLGRLAKKGERFDVVISDPPSFSTTRSTRFSAARDYP 249

Query: 310 GMVQAYPHIL------YISCNPDSL 328
            + +A   ++         CN   L
Sbjct: 250 LLAEAAARVVAPGGRLVACCNLAPL 274


>gi|256752133|ref|ZP_05492999.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748947|gb|EEU61985.1| ribosomal protein L11 methyltransferase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 308

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L      +  + ++ CG+G  S+  ++     V A +I + SVE AR N+  
Sbjct: 159 TTKMCLEFLEDIVMPESIVFDVGCGSGILSITSSKLGAKEVYAADIDEVSVEVARQNVEL 218

Query: 254 NHVNNVKIVRMS 265
           N++ NVK+ +  
Sbjct: 219 NNLQNVKVFKSD 230


>gi|254775429|ref|ZP_05216945.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 191

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           A      G  L+L CG G  ++ LA    RVL ++++  ++  AR       V   +  R
Sbjct: 34  ADVFPAAGRALDLACGQGTAAVWLALRGLRVLGLDVSPVAIGQARDLARRAGVG--ERCR 91

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
               +  + +      + +        R     V+    G
Sbjct: 92  FDVADLDRGLPVGPLADVIVCCKFRDRRLDRAIVERLAPG 131


>gi|187925400|ref|YP_001897042.1| ribosomal protein L11 methyltransferase [Burkholderia phytofirmans
           PsJN]
 gi|226710061|sp|B2SYT3|PRMA_BURPP RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|187716594|gb|ACD17818.1| ribosomal protein L11 methyltransferase [Burkholderia phytofirmans
           PsJN]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + +  Q  +L+  CG+G  ++ LA+      V  ++I   +VE+AR+N   N  
Sbjct: 156 MEWLEQSVQPEQS-VLDYGCGSGILAI-LAKKCGANPVYGIDIDPQAVESARHNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|170730036|ref|YP_001775469.1| protoporphyrinogen oxidase [Xylella fastidiosa M12]
 gi|167964829|gb|ACA11839.1| protoporphyrinogen oxidase [Xylella fastidiosa M12]
          Length = 275

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L       +  + +L  G+G  +L +A  R   +VLA + +  +++ A  N 
Sbjct: 91  TETLVEQALQRLDHASERRVADLGTGSGAIALAIACERPQAQVLATDNSAAALDIAARNA 150

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +A+ +N+V     +   + +A+  ER              F  I  +PP
Sbjct: 151 SAHRLNHVVFREGN---WYEALLGER--------------FDLIVSNPP 182


>gi|154508469|ref|ZP_02044111.1| hypothetical protein ACTODO_00969 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798103|gb|EDN80523.1| hypothetical protein ACTODO_00969 [Actinomyces odontolyticus ATCC
           17982]
          Length = 563

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 21/120 (17%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           G  + +LE  +          L++ CG G  +L LA H DRV+A +++  +    ++N A
Sbjct: 205 GATLTLLEMTVREQVDSA---LDVGCGCGIQALYLATHADRVVATDLSSRACALTQFNAA 261

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
            N                +A+   RE +  +   +    F  I  +PP     D+  G  
Sbjct: 262 LN----------------EAVIDVREGSLFE--PVEGETFDLIVTNPPFVITPDSVRGAA 303


>gi|154174049|ref|YP_001407413.1| hypothetical protein CCV52592_0091 [Campylobacter curvus 525.92]
 gi|112802165|gb|EAT99509.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 240

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+++ CG G ++L+LA+    + AV+ +   ++  R + A   V NV  V+ S +EF+
Sbjct: 42  LVDIGCGTGVWTLLLAKEASHITAVDSSAGMIDILRQDAAKFSVKNVTAVQKSWQEFS 99


>gi|71274722|ref|ZP_00651010.1| Modification methylase HemK [Xylella fastidiosa Dixon]
 gi|71899597|ref|ZP_00681752.1| Modification methylase HemK [Xylella fastidiosa Ann-1]
 gi|71164454|gb|EAO14168.1| Modification methylase HemK [Xylella fastidiosa Dixon]
 gi|71730639|gb|EAO32715.1| Modification methylase HemK [Xylella fastidiosa Ann-1]
          Length = 275

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 20/109 (18%)

Query: 195 NVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L       +  + +L  G+G  +L +A  R   +VLA + +  +++ A  N 
Sbjct: 91  TETLVEQALQRLDHASERRVADLGTGSGAIALAIACERPQAQVLATDNSAAALDIAARNA 150

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +A+ +N+V     +   + +A+  ER              F  I  +PP
Sbjct: 151 SAHRLNHVVFREGN---WYEALLGER--------------FDLIVSNPP 182


>gi|327451839|gb|EGE98493.1| methyltransferase small domain protein [Propionibacterium acnes
           HL083PA2]
          Length = 152

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 21/104 (20%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  +  LAR      ++AV++   +++    N  A  V + ++  
Sbjct: 63  PPPSDGTFLDLGCGYGPIACALARACPGSHIVAVDVNDLAIDLTTRNAKALRVGD-RVHA 121

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDD 306
              +E    +R                 F  I+ +PP R G   
Sbjct: 122 CRPEEVDPDLR-----------------FDEIWSNPPIRVGKAA 148


>gi|327335209|gb|EGE76919.1| methyltransferase small domain protein [Propionibacterium acnes
           HL097PA1]
          Length = 362

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  ++++      AN 
Sbjct: 209 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAIDSTHLTAQANQ 268

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           ++ V                         +DI +     +  +PP     +     T+ M
Sbjct: 269 LDIVTHWCDGL------------------VDIPNESVDVVVTNPPFHRGTAQDHAPTLAM 310

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 311 LADAARVL 318


>gi|313828766|gb|EFS66480.1| methyltransferase small domain protein [Propionibacterium acnes
           HL063PA2]
          Length = 505

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L++ CG G  SL L+RH D V+A ++   ++E A+              R+S  +  
Sbjct: 167 GSALDMGCGCGVQSLHLSRHADHVVATDVNPRALEMAQL-----------TCRLSHADVD 215

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
                  +       D+       +   P R G
Sbjct: 216 IRDGSLYDPCGHDTFDLIITNPPYVMAPPSRDG 248


>gi|313771720|gb|EFS37686.1| methyltransferase small domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793751|gb|EFS41782.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803063|gb|EFS44271.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808468|gb|EFS46935.1| methyltransferase small domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810542|gb|EFS48256.1| methyltransferase small domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313818106|gb|EFS55820.1| methyltransferase small domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820965|gb|EFS58679.1| methyltransferase small domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823963|gb|EFS61677.1| methyltransferase small domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827100|gb|EFS64814.1| methyltransferase small domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313831585|gb|EFS69299.1| methyltransferase small domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313832572|gb|EFS70286.1| methyltransferase small domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314926991|gb|EFS90822.1| methyltransferase small domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314961811|gb|EFT05912.1| methyltransferase small domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964796|gb|EFT08896.1| methyltransferase small domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314974935|gb|EFT19030.1| methyltransferase small domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977971|gb|EFT22065.1| methyltransferase small domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979639|gb|EFT23733.1| methyltransferase small domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984619|gb|EFT28711.1| methyltransferase small domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988276|gb|EFT32367.1| methyltransferase small domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990365|gb|EFT34456.1| methyltransferase small domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079238|gb|EFT51241.1| methyltransferase small domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082300|gb|EFT54276.1| methyltransferase small domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083731|gb|EFT55707.1| methyltransferase small domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087370|gb|EFT59346.1| methyltransferase small domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089787|gb|EFT61763.1| methyltransferase small domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095561|gb|EFT67537.1| methyltransferase small domain protein [Propionibacterium acnes
           HL038PA1]
 gi|327326550|gb|EGE68338.1| methyltransferase small domain protein [Propionibacterium acnes
           HL096PA3]
 gi|327332816|gb|EGE74548.1| methyltransferase small domain protein [Propionibacterium acnes
           HL096PA2]
 gi|327447639|gb|EGE94293.1| methyltransferase small domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448512|gb|EGE95166.1| methyltransferase small domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449631|gb|EGE96285.1| methyltransferase small domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327456083|gb|EGF02738.1| methyltransferase small domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328757333|gb|EGF70949.1| methyltransferase small domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328762093|gb|EGF75598.1| methyltransferase small domain protein [Propionibacterium acnes
           HL099PA1]
          Length = 362

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  ++++      AN 
Sbjct: 209 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAIDSTHLTAQANQ 268

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           ++ V                         +DI +     +  +PP     +     T+ M
Sbjct: 269 LDIVTHWCDGL------------------VDIPNESVDVVVTNPPFHRGTAQDHAPTLAM 310

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 311 LADAARVL 318


>gi|300786180|ref|YP_003766471.1| methyltransferase [Amycolatopsis mediterranei U32]
 gi|299795694|gb|ADJ46069.1| methyltransferase [Amycolatopsis mediterranei U32]
          Length = 239

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 19/107 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
              +   +           L+L  G G  ++ LAR     VLAV++++ ++ +AR N   
Sbjct: 42  TALLASAIAELAIPAGARALDLCTGTGAQAITLARRGAGTVLAVDLSRRALASARLNALV 101

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +         ++   +                    F  +  +PP
Sbjct: 102 RQLAVRPCRGGLARALREG------------------PFDVVVANPP 130


>gi|284164984|ref|YP_003403263.1| methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
 gi|284014639|gb|ADB60590.1| Methyltransferase type 11 [Haloterrigena turkmenica DSM 5511]
          Length = 219

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +  A   +   +L+L  G G  +L LA   DRV+  +I++  +E A        + N++ 
Sbjct: 35  IEHAAPEVDDVVLDLGTGTGAIALALAPDADRVVGRDISEGMMEEAEQKADDEGLENLEF 94

Query: 262 VRMSSKE 268
              + +E
Sbjct: 95  EYGTFRE 101


>gi|229082543|ref|ZP_04215006.1| Protein hemK [Bacillus cereus Rock4-2]
 gi|228700975|gb|EEL53498.1| Protein hemK [Bacillus cereus Rock4-2]
          Length = 283

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA   +   V  V+IA+ S+E A+ N  A  
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENENLHVYTVDIAQESIEVAKENAKALG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFHKTGQKLDVVVSNPP 190


>gi|218297241|ref|ZP_03497897.1| protein of unknown function Met10 [Thermus aquaticus Y51MC23]
 gi|218242434|gb|EED08974.1| protein of unknown function Met10 [Thermus aquaticus Y51MC23]
          Length = 385

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 20/174 (11%)

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-----DYVDE 169
              +V  +  R ++         L +A+       +    A + +   +R       V E
Sbjct: 115 GGVLVLQVRSRGMEALREVWFPALLEAMRPEGVYERSDVEARRQEGLPERVGVVFGEVPE 174

Query: 170 RLTVAGRTLIYRQI-----ENSFT--QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            L+V    L++        +  F   Q     N  +LE    A       +L++Y   G 
Sbjct: 175 VLSVEEDGLLFSIPLALAQKTGFYLDQ---RENRRLLE----AMVRPGERVLDVYSYVGG 227

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           F+L  AR     LAV+    ++           +  V I +  + E  + +   
Sbjct: 228 FALRAARKGAYALAVDKDLEALSVLDRAALRAGLR-VDIRQGEALEVLRTLEGP 280


>gi|182419289|ref|ZP_02950542.1| methyltransferase [Clostridium butyricum 5521]
 gi|237667733|ref|ZP_04527717.1| PUA domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376929|gb|EDT74500.1| methyltransferase [Clostridium butyricum 5521]
 gi|237656081|gb|EEP53637.1| PUA domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 395

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 10/111 (9%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
              +   L         +L  +   G FS+  AR      +V++A  S+E  R N   N 
Sbjct: 207 QKDVRKSLKEKYSKDKTVLNTFSYTGAFSMAAARGGAITTSVDLASRSLEKTRENFEING 266

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           ++  K            +  E  F+  K     + +F  + +DPP      
Sbjct: 267 IDYKK----------HDIVVEDIFHYFKRAAKENLKFDVVILDPPSFATSK 307


>gi|156972541|ref|YP_001443448.1| ribosomal protein L11 methyltransferase [Vibrio harveyi ATCC
           BAA-1116]
 gi|166223500|sp|A7MXI3|PRMA_VIBHB RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|156524135|gb|ABU69221.1| hypothetical protein VIBHAR_00173 [Vibrio harveyi ATCC BAA-1116]
          Length = 295

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L +       +++  CG+G  ++   +   ++V+ ++I   +++A+R N   N V 
Sbjct: 150 LEW-LESLDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRDNAERNGVA 208

Query: 258 N 258
           N
Sbjct: 209 N 209


>gi|145589641|ref|YP_001156238.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048047|gb|ABP34674.1| [LSU ribosomal protein L3P]-glutamine N5-methyltransferase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 298

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 87/240 (36%), Gaps = 34/240 (14%)

Query: 63  FDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLI 122
            D + ++   +D        IN +  ++ A         A L           +A+   I
Sbjct: 1   MDPEPQQAFTVDQC------INQIAQKLAA---------ANLHYGHGAIDAQSEAL--WI 43

Query: 123 YHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ 182
             + LD +  E    L D + A + Q++    A+ T+I   +             + +  
Sbjct: 44  VSKQLDLSPTEALNHLEDQISADQ-QLKASAVAD-TRISTRKPLAYILGEAWLMGVPFFC 101

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIA 240
            E S   P + I   +++  L       G+ L+L  GNG+ +++LA       V A +I+
Sbjct: 102 SEQS-IVPRSWIAELIIDGSLEPWLPADGNALDLCTGNGSLAILLALSCPDIHVSACDIS 160

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            P++  A  N+  + +     + +   +   A+    E N           F  I  +PP
Sbjct: 161 MPALSVAARNVDRHGLK--SQIELFDGDLWDAIPEPNEDN----------VFDLIICNPP 208


>gi|16799361|ref|NP_469629.1| hypothetical protein lin0284 [Listeria innocua Clip11262]
 gi|16412713|emb|CAC95517.1| lin0284 [Listeria innocua Clip11262]
          Length = 201

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  +
Sbjct: 61  GKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 120

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                            ++ +  ++ I  +PP          +++ 
Sbjct: 121 -----------------NVTANDYQAIISNPPIRAGKKVVHAILEG 149


>gi|307710912|ref|ZP_07647338.1| methyltransferase domain protein [Streptococcus mitis SK321]
 gi|307617268|gb|EFN96442.1| methyltransferase domain protein [Streptococcus mitis SK321]
          Length = 195

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             ++L+   G G  +L LA+    V  V+I++  +E AR       + N+K +     E
Sbjct: 37  DKEILDFGGGTGLLTLPLAKQAKSVTLVDISEKMLEQARLKAEQQDIMNIKFLEQDLLE 95


>gi|269103647|ref|ZP_06156344.1| ribosomal protein L11 methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163545|gb|EEZ42041.1| ribosomal protein L11 methyltransferase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 294

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L         +++  CG+G  ++  L     +V+ ++I   ++ A+R N   N V 
Sbjct: 150 LEW-LDGQDLTGKTVIDFGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAERNGVA 208

Query: 258 N 258
           +
Sbjct: 209 D 209


>gi|259503693|ref|ZP_05746595.1| protein-(glutamine-N5) methyltransferase [Lactobacillus antri DSM
           16041]
 gi|259168325|gb|EEW52820.1| protein-(glutamine-N5) methyltransferase [Lactobacillus antri DSM
           16041]
          Length = 290

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 24/131 (18%)

Query: 195 NVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++EWVLAA     +  +L+L  G+G   + LA  R    V   +I+  ++  AR N 
Sbjct: 101 TAELVEWVLAALPADRELRVLDLGTGSGVIGITLALERPCWSVTLSDISPAALAVARENA 160

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-- 309
             + +                +     F  L D      R+  I  +PP        +  
Sbjct: 161 QRHQL-------------ALPLVESDLFANLADQ-----RYDVIVTNPPYIDPAATALMD 202

Query: 310 -GMVQAYPHIL 319
             +++  P + 
Sbjct: 203 QAVLENEPRVA 213


>gi|257454759|ref|ZP_05620013.1| 3-demethylubiquinone-9 3-O-methyltransferase [Enhydrobacter
           aerosaccus SK60]
 gi|257447879|gb|EEV22868.1| 3-demethylubiquinone-9 3-O-methyltransferase [Enhydrobacter
           aerosaccus SK60]
          Length = 244

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           + +     G+ G  +L++ CG G  S  +A     V  +++ + +++AA+ +        
Sbjct: 49  QTIARQQSGLTGKKVLDVGCGGGILSHSMAVRGATVTGIDLGEANIKAAQIHAEQTS-QA 107

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +    ++ ++F +A   E +     ++  H    ++I  
Sbjct: 108 IDFACVAVEDFAKAHAGEFDVVTCMEMLEHVPDPQSIIN 146


>gi|284034283|ref|YP_003384214.1| type 11 methyltransferase [Kribbella flavida DSM 17836]
 gi|283813576|gb|ADB35415.1| Methyltransferase type 11 [Kribbella flavida DSM 17836]
          Length = 231

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 198 MLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           ++E  + A +   G  +L+L CG G    + A    RV+ VE      EAAR       +
Sbjct: 32  VIEPAMRAIRDWAGATVLDLGCGTGFHLPLFAATAARVIGVEPHGTLAEAARR--RTRGL 89

Query: 257 NNVKIVRMSSKEF 269
            NV++ + ++++ 
Sbjct: 90  ANVEVRQGTAQQV 102


>gi|160946321|ref|ZP_02093530.1| hypothetical protein PEPMIC_00281 [Parvimonas micra ATCC 33270]
 gi|158447437|gb|EDP24432.1| hypothetical protein PEPMIC_00281 [Parvimonas micra ATCC 33270]
          Length = 266

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +  +L++ CG+G  SL LA++  +  +  V+I+K ++  +  N    ++ N+K     
Sbjct: 100 KDKILDIGCGSGAISLALAKNLYKSYIYGVDISKEAINLSNKNKEKLNLQNIKFFESD 157


>gi|149377202|ref|ZP_01894950.1| SAM-dependent methyltransferase [Marinobacter algicola DG893]
 gi|149358501|gb|EDM46975.1| SAM-dependent methyltransferase [Marinobacter algicola DG893]
          Length = 204

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                  +LE  CG G+ +LV A H   +LA +I+   +E A        V NV+  + +
Sbjct: 36  YFQPNWSVLEFGCGTGSTALVHAPHVKEILATDISDKMLEIAAQKARDAGVENVRFQQGT 95

Query: 266 SKEFT 270
            +   
Sbjct: 96  LESLA 100


>gi|119897379|ref|YP_932592.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase [Azoarcus
           sp. BH72]
 gi|119669792|emb|CAL93705.1| protein-L-isoaspartate (D-aspartate) O-methyltransferase [Azoarcus
           sp. BH72]
          Length = 201

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           +V+E L  +        +   F Q      +   M+E +L +     G +LE+  G G  
Sbjct: 27  FVEEGLAYSAYDDTA--LPIGFQQTISQPYVVARMIE-LLRSGGRQLGRVLEIGAGCGYQ 83

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           + VL+     V AVE  +P ++ AR N+    + N   VR+   + T  +     F  + 
Sbjct: 84  AAVLSTLATEVYAVERIRPLLDKARANLRPLRLPN---VRLKHADGTLGLPEAAPFESII 140

Query: 284 DIDIHSYRFKTI 295
                      +
Sbjct: 141 VAAAAGGVPNAL 152


>gi|27366003|ref|NP_761531.1| putative tRNA methylase [Vibrio vulnificus CMCP6]
 gi|81447974|sp|Q8D992|RLMI_VIBVU RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|27362203|gb|AAO11058.1| predicted tRNA methylase [Vibrio vulnificus CMCP6]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 204 AATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A       ++L  +   G F L  L     RV+  ++++P+++ A++N   N        
Sbjct: 214 AMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNE------- 266

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
                +          F  L++      +F  + +DPP+     A + G  + Y  I
Sbjct: 267 -FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKFAESKAQLNGACRGYKDI 322


>gi|56421912|ref|YP_149230.1| protoporphyrinogen oxidase [Geobacillus kaustophilus HTA426]
 gi|56381754|dbj|BAD77662.1| protoporphyrinogen oxidase [Geobacillus kaustophilus HTA426]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 18/91 (19%)

Query: 212 DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D++++  G+G  ++ LA       V A +I++ ++  AR N       NV  +       
Sbjct: 120 DVVDVGTGSGAIAVTLALENKALSVTATDISEAALAVARENARRLGA-NVSFLCGDL--- 175

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                       L+ I    +    +  +PP
Sbjct: 176 ------------LQPIMAMGWTVDVVVSNPP 194


>gi|329909059|ref|ZP_08274991.1| Protein-L-isoaspartate O-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546558|gb|EGF31535.1| Protein-L-isoaspartate O-methyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 217

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 ML+            +LE+  G+G  + +LAR    V ++EI +     A  N+
Sbjct: 63  PKFEARMLQEAAVKKHES---VLEIGAGSGYMAALLARCARHVTSIEIEEDLQALAEDNL 119

Query: 252 AANHVNNVKIVRMS 265
               ++NV ++   
Sbjct: 120 CRYGIDNVDVILGD 133


>gi|308177997|ref|YP_003917403.1| SAM-dependent methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307745460|emb|CBT76432.1| putative SAM-dependent methyltransferase [Arthrobacter arilaitensis
           Re117]
          Length = 241

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N     H     LA  K  Q  +L+L CG G  ++        V+ V+ +   +  AR 
Sbjct: 16  ANPDGPDHDYYRALANRKNAQ-RILDLGCGTGILTVSFVSPGRSVVGVDPSPSMLAYAR- 73

Query: 250 NIAANHVNNVKIVRMSSKEFTQA 272
                  +NV  +   +    + 
Sbjct: 74  --QRPGADNVTWIHGKATALAEG 94


>gi|302837301|ref|XP_002950210.1| hypothetical protein VOLCADRAFT_90588 [Volvox carteri f.
           nagariensis]
 gi|300264683|gb|EFJ48878.1| hypothetical protein VOLCADRAFT_90588 [Volvox carteri f.
           nagariensis]
          Length = 161

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 198 MLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           ++  VL  T    GD L +L CG+G   L  AR   R +  E+    V  A        +
Sbjct: 41  VISRVLDLTAVGPGDCLYDLGCGDGRVLLAAARRGARCVGFELDPELVRDAVTAARTAGL 100

Query: 257 NN-VKIVRMSSK 267
            + V++VR  + 
Sbjct: 101 ESLVRVVRADAA 112


>gi|281358686|ref|ZP_06245163.1| PUA domain containing protein [Victivallis vadensis ATCC BAA-548]
 gi|281314812|gb|EFA98848.1| PUA domain containing protein [Victivallis vadensis ATCC BAA-548]
          Length = 399

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
              + A       +L  +   G F++  L    + V+ ++ + P+++ A +N+  N +  
Sbjct: 212 ARAVVAAYADGRTVLNAFSYTGAFAVSALLAGAEHVINIDSSAPALKQAAHNLEMNRIKP 271

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
            +    ++  FT       E  RL +      +F  + +DPP+       +
Sbjct: 272 ERYENRTADVFT-------ELRRLVE---EGRKFDLVILDPPKFIESQKAL 312


>gi|302879737|ref|YP_003848301.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Gallionella capsiferriformans ES-2]
 gi|302582526|gb|ADL56537.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Gallionella capsiferriformans ES-2]
          Length = 288

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 28/139 (20%)

Query: 173 VAGRTLIYRQIENSFTQPNAGIN---------VHMLEWVLAATKGIQGDLLELYCGNGNF 223
           +AG  + Y   E  F   N  +            +L  +        G +L++  G+G  
Sbjct: 77  LAGEPIAYLLGEREFFGLNFKVTPATLIPRPDTELLVEMALQHIPAGGAVLDMGTGSGAI 136

Query: 224 SLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR 281
           +L +AR     RV+AV+ ++ ++  A  N    ++  V+            + R   F+ 
Sbjct: 137 ALSIARERPDARVVAVDASEAALIVAAENAQRLNLGRVR------------LLRSDWFSA 184

Query: 282 LKDIDIHSYRFKTIFVDPP 300
           L        RF  I  +PP
Sbjct: 185 L-----SGERFDLIASNPP 198


>gi|262199369|ref|YP_003270578.1| methyltransferase type 11 [Haliangium ochraceum DSM 14365]
 gi|262082716|gb|ACY18685.1| Methyltransferase type 11 [Haliangium ochraceum DSM 14365]
          Length = 215

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
               ML  +    +G  G +LE+  G G  + VLAR  D ++A + A   V      + A
Sbjct: 34  ATEQMLARIADDARG-AGRVLEVAAGTGLVTAVLARAADEIVATDYAAAMVAELEQRVQA 92

Query: 254 NHVNNVKIVRMS 265
             + NV+  +  
Sbjct: 93  QGLTNVRCEQAD 104


>gi|217970599|ref|YP_002355833.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Thauera sp. MZ1T]
 gi|217507926|gb|ACK54937.1| modification methylase, HemK family [Thauera sp. MZ1T]
          Length = 317

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 34/147 (23%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ---GDLLEL 216
           I  +    D R TV  R      +  SF          +LE   A         G +L++
Sbjct: 110 ILGEAWLGDFRFTVDPRV----IVPRSFF-------AELLEDGFAPWVEDPEAVGSVLDM 158

Query: 217 YCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAM 273
             G+G  ++++A  F    V AV++++ +++ AR N+A   + + +++V     E     
Sbjct: 159 CTGSGCLAILMAHAFPNAHVSAVDLSEDALDVARINVADYGLEDRIELVHGDVFE----- 213

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPP 300
                        +   RF  I  +PP
Sbjct: 214 ------------GLEGRRFDLILSNPP 228


>gi|239617253|ref|YP_002940575.1| modification methylase, HemK family [Kosmotoga olearia TBF 19.5.1]
 gi|239506084|gb|ACR79571.1| modification methylase, HemK family [Kosmotoga olearia TBF 19.5.1]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251
              ++E ++   KG       ++  G+G  ++ LA+HF   ++ A +I+KP++E A  N 
Sbjct: 97  TEELVEMIINEHKGKNVKAFADVGTGSGAIAIALAKHFPASKIYATDISKPALELAFENA 156

Query: 252 AANHVNN-VKIVRMSSKEFTQAMRREREF 279
             N V   +  +   +    +A   E E 
Sbjct: 157 KINGVEGRIAFLHGKNLNPLEAYMDEIEI 185


>gi|218296520|ref|ZP_03497248.1| modification methylase, HemK family [Thermus aquaticus Y51MC23]
 gi|218243062|gb|EED09594.1| modification methylase, HemK family [Thermus aquaticus Y51MC23]
          Length = 272

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L+     +  +L++  G G  +L L RH     V A E+   ++  A  N     
Sbjct: 96  LVELALSLPLPPRPRVLDVGTGTGAIALALKRHLPEAEVHATEVDPRALALAEENARRLG 155

Query: 256 V 256
           +
Sbjct: 156 L 156


>gi|167586069|ref|ZP_02378457.1| ribosomal protein L11 methyltransferase [Burkholderia ubonensis Bu]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + +  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR N   N  
Sbjct: 156 MEWLEQSVQPGQS-VLDYGCGSGILAI-LAKKCGANLVVGIDIDPQAVESARQNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|186473194|ref|YP_001860536.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           phymatum STM815]
 gi|184195526|gb|ACC73490.1| DNA methylase N-4/N-6 domain protein [Burkholderia phymatum STM815]
          Length = 305

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--SVEAARYNIAAN 254
            ++E ++ A+    G +L+ + G+G  ++  AR     +  EI +   ++   R ++AAN
Sbjct: 227 EIVERMVLASCPPGGRVLDPFMGSGTTAVACARQTREFVGYEINESYCAIARERVSLAAN 286


>gi|72014458|ref|XP_782522.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115929891|ref|XP_001190791.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 186

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G  + +LA+ F     + V+IA+  V+ A        + NV   R+     
Sbjct: 4   RVLDVGCGAGLATQILAKKFPESHFVGVDIAQSIVDEANAEATRLGLKNVSYFRVDGSVM 63

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                   +     ++   + R   +  D  R    D T+ +++
Sbjct: 64  PSDWASTFDHAFFFNMLHDTSRPDLLIDDVKRVMKKDGTLSIIE 107


>gi|154174895|ref|YP_001407487.1| hypothetical protein CCV52592_0812 [Campylobacter curvus 525.92]
 gi|112803861|gb|EAU01205.1| conserved hypothetical protein [Campylobacter curvus 525.92]
          Length = 271

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L+ V          + ++ CG G  S+ +AR    V AV+     +     N     V N
Sbjct: 25  LKQVEILPVTSADSVADIGCGTGRLSVPIARIAKSVTAVDAFAKMLHHCETNAKEAGVKN 84

Query: 259 VKI 261
           +K 
Sbjct: 85  IKF 87


>gi|87118601|ref|ZP_01074500.1| protein-L-isoaspartate O-methyltransferase [Marinomonas sp. MED121]
 gi|86166235|gb|EAQ67501.1| protein-L-isoaspartate O-methyltransferase [Marinomonas sp. MED121]
          Length = 221

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 8/127 (6%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             M +W+L       G +LE+  G+G  + +LA  F++V  +E  +   E A+  +    
Sbjct: 76  ARMTQWLL--QYARLGRVLEVGTGSGYQTALLAHFFNKVHTIERKQALHEMAKQRLGQLQ 133

Query: 256 VNNVKIVRMSSKE------FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           +NNV+ +   + +         A+      N++    + + +   + + P    +     
Sbjct: 134 INNVEYLYGDANKGWPTRVALDAIIVTAMVNKVPTALLENLKEGGVLIMPIEDTVSCVAC 193

Query: 310 GMVQAYP 316
            + +   
Sbjct: 194 WIKEGTK 200


>gi|71020583|ref|XP_760522.1| hypothetical protein UM04375.1 [Ustilago maydis 521]
 gi|46100417|gb|EAK85650.1| hypothetical protein UM04375.1 [Ustilago maydis 521]
          Length = 618

 Score = 46.2 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
           ++++ CG G  SL  AR    +V+A++ +   VE A+ N+ AN   + VK+ R   ++ +
Sbjct: 274 VMDVGCGTGILSLFAARAGAKQVIAIDASAI-VERAQQNVEANGFGHIVKVHRGKLEDLS 332

Query: 271 QAMR 274
             ++
Sbjct: 333 SELK 336


>gi|115374860|ref|ZP_01462134.1| metalloid methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|310817630|ref|YP_003949988.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115368169|gb|EAU67130.1| metalloid methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|309390702|gb|ADO68161.1| methyltransferase [Stigmatella aurantiaca DW4/3-1]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYN 250
           +   ML             +L++  G G  +L  A        VL +++ +  +  AR  
Sbjct: 34  VTERMLALA---GLAPGMRVLDIAAGRGEPALPAAHRVGPQGWVLGIDLVEGMLHIARER 90

Query: 251 IAANHVNNVKIVRMSSKEF 269
                +NNV+     ++ F
Sbjct: 91  ARREGLNNVEFRAADAESF 109


>gi|115379709|ref|ZP_01466786.1| thiopurine S-methyltransferase (tpmt) superfamily [Stigmatella
           aurantiaca DW4/3-1]
 gi|310820842|ref|YP_003953200.1| thiopurine s-methyltransferase (tpmt) superfamily [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363275|gb|EAU62433.1| thiopurine S-methyltransferase (tpmt) superfamily [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393914|gb|ADO71373.1| Thiopurine S-methyltransferase (Tpmt) superfamily [Stigmatella
           aurantiaca DW4/3-1]
          Length = 255

 Score = 46.2 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 11/111 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS--KEFT 270
           L++L CG+G  +  LA+HF RV+ V+++  +V  A     ++    ++   +     E  
Sbjct: 58  LVDLGCGSGIQTRCLAQHFPRVIGVDVSPSAVALA---AQSHPHPTLQYRVLDVFDAEAV 114

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           QA R E     + +++I+  R     V P       A++  +     +LY+
Sbjct: 115 QAFRAE-----MGEVNIY-MRTLLHLVQPAARARFAASIETLLGRHGVLYL 159


>gi|37679731|ref|NP_934340.1| SAM-dependent methyltransferase [Vibrio vulnificus YJ016]
 gi|81757646|sp|Q7ML80|RLMI_VIBVY RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|37198476|dbj|BAC94311.1| predicted SAM-dependent methyltransferase [Vibrio vulnificus YJ016]
          Length = 397

 Score = 46.2 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 204 AATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A       ++L  +   G F L  L     RV+  ++++P+++ A++N   N        
Sbjct: 214 AMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNE------- 266

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
                +          F  L++      +F  + +DPP+     A + G  + Y  I
Sbjct: 267 -FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKFAESKAQLNGACRGYKDI 322


>gi|325518405|gb|EGC98123.1| ribosomal protein L11 methyltransferase [Burkholderia sp. TJI49]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + +  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR N   N  
Sbjct: 156 MEWLEQSVQPGQS-VLDYGCGSGILAI-LAKKCGANPVVGIDIDPQAVESARQNSERNRA 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|294494863|ref|YP_003541356.1| hypothetical protein Mmah_0176 [Methanohalophilus mahii DSM 5219]
 gi|292665862|gb|ADE35711.1| protein of unknown function Met10 [Methanohalophilus mahii DSM
           5219]
          Length = 273

 Score = 46.2 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQ-IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
           KI L    V    T       YR  +   F  P  G   H +  ++      + D+L  +
Sbjct: 79  KILLGGSTVT---THGEFKYRYRLDLSEVFFNPRLGYERHRVTSLVL----PREDVLVAF 131

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEF 269
           CG G F++  A    RV  VE  + +      NI  N+   ++  +   +++ 
Sbjct: 132 CGVGPFAIPAAIRDVRVFCVEKNRYACHWLAENIRLNNFKGHIYPINADARDI 184


>gi|294892201|ref|XP_002773945.1| hypothetical protein Pmar_PMAR011808 [Perkinsus marinus ATCC 50983]
 gi|239879149|gb|EER05761.1| hypothetical protein Pmar_PMAR011808 [Perkinsus marinus ATCC 50983]
          Length = 105

 Score = 46.2 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 191 NAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N  I+  +L+ V    +  +GD+  +L+ GNG  SL LA     ++A++ ++  V   + 
Sbjct: 20  NVTIHKQILDTVSEFARPEKGDVVWDLWAGNGVTSLTLAGKCRHIVAIDASRTRVNGLKE 79

Query: 250 NIAAN 254
           N+  N
Sbjct: 80  NLKLN 84


>gi|238755242|ref|ZP_04616587.1| Ribosomal RNA small subunit methyltransferase D [Yersinia ruckeri
           ATCC 29473]
 gi|238706583|gb|EEP98955.1| Ribosomal RNA small subunit methyltransferase D [Yersinia ruckeri
           ATCC 29473]
          Length = 205

 Score = 46.2 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 24/146 (16%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+    +G     L+ + G+G   L  L+R+    + +E  +        N+A
Sbjct: 40  VRETLFNWLAPMIQG--ARCLDCFAGSGALGLEALSRYAGETVLLEYERHVAHQLSRNLA 97

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
             + +N ++V  ++               L  +      F  +F+DPP R GL   TV +
Sbjct: 98  LLNADNAQVVNTNA---------------LNWLAQAGKPFDLVFLDPPFRKGLLAETVNL 142

Query: 312 VQAYPHI-----LYISCNPDSLCRDL 332
           ++    +     +Y+    +S   D+
Sbjct: 143 LERQGWLADEAWIYVEAEAESAATDV 168


>gi|261420782|ref|YP_003254464.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y412MC61]
 gi|319768452|ref|YP_004133953.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y412MC52]
 gi|261377239|gb|ACX79982.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y412MC61]
 gi|317113318|gb|ADU95810.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus sp. Y412MC52]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 18/91 (19%)

Query: 212 DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D++++  G+G  ++ LA       V A +I++ ++  AR N       NV  +       
Sbjct: 120 DVVDVGTGSGAIAVTLALENKALSVTATDISEAALAVARENARRLGA-NVSFLCGDL--- 175

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                       L+ I    +    +  +PP
Sbjct: 176 ------------LQPIMAMGWTVDVVVSNPP 194


>gi|206970195|ref|ZP_03231148.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus AH1134]
 gi|206734772|gb|EDZ51941.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus AH1134]
          Length = 283

 Score = 46.2 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA   +   V  V+IA+ S+E A+ N  A  
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENENLHVYTVDIAQESIEVAKENAKALG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFHKTGQKLDVVVSNPP 190


>gi|296388379|ref|ZP_06877854.1| hypothetical protein PaerPAb_09500 [Pseudomonas aeruginosa PAb1]
 gi|313108442|ref|ZP_07794446.1| putative biotin synthesis protein [Pseudomonas aeruginosa 39016]
 gi|310880948|gb|EFQ39542.1| putative biotin synthesis protein [Pseudomonas aeruginosa 39016]
          Length = 253

 Score = 46.2 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/64 (18%), Positives = 29/64 (45%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +  +L+L CG G+ S  +A     V+A +++   +     + A   + N++  +  ++ 
Sbjct: 42  PEARVLDLGCGAGHVSFQVAALAGEVVAYDLSAEMLAVVAQSAAERGMANIRTEQGKAES 101

Query: 269 FTQA 272
              A
Sbjct: 102 LPFA 105


>gi|300865423|ref|ZP_07110226.1| type I site-specific deoxyribonuclease [Oscillatoria sp. PCC 6506]
 gi|300336582|emb|CBN55376.1| type I site-specific deoxyribonuclease [Oscillatoria sp. PCC 6506]
          Length = 540

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 76/229 (33%), Gaps = 40/229 (17%)

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
             I  E L ++ +F +  LT      ++  I    +     E    L + L     ++  
Sbjct: 117 DEISDEELEKSSIFILGDLT-----DVLNNIERSTMGKESEEDFDHLFEDLDLNSTKLGR 171

Query: 152 IGRANKT---KICLDRDYVDERLTVAGRTL---IYRQI-----------ENSFTQPNAGI 194
             +A      KI +  D +D RL      +    Y  +              F       
Sbjct: 172 TPKAKNALIAKILVHLDKIDFRLGDTESDVLGDAYEYLIGQFASGAGKKAGEFY--TPQQ 229

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV---LAVEIAKPSVEAARYNI 251
              +L  ++   K     + +  CG+G+  L +AR  + V      E+ + +   AR N+
Sbjct: 230 VSKVLAKIVTTGKERLKSVYDPTCGSGSLLLRVAREVESVGDFYGQEMNRTTYNLARMNM 289

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             + V+                   R+ + L++      RF+ +  +PP
Sbjct: 290 ILHGVHYRNF-------------DLRQEDTLENPQHEGMRFEAVVANPP 325


>gi|237753106|ref|ZP_04583586.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375373|gb|EEO25464.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 266

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN---IAANHVNNVKIVRMSSK 267
             +L+  CG G F    A++  +V+ V+++   +E A+ N    +A     ++      +
Sbjct: 44  DRILDFGCGTGIFCEYFAKNGYKVVGVDVSFDMIEYAKKNHNLHSARGGGQIEYYCDDIR 103

Query: 268 EFTQAMRRERE 278
            F +  R++ E
Sbjct: 104 SFPRENRKKFE 114


>gi|227114798|ref|ZP_03828454.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 8/147 (5%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMS 265
               +L+L  G+G  ++  A+ F    V AV+I+  ++     NI  + +   V  +R  
Sbjct: 132 TPNHILDLCTGSGCIAIACAQAFPEAEVDAVDISSEALAVTEQNIQQHGLEYRVTPIRSD 191

Query: 266 SKEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
                 A+R +        +D          F   P  GL       +     IL  +C 
Sbjct: 192 LFRDLPAIRYDLIVTNPPYVDEEDMSDLPQEFRFEPELGLAAG-NDGLDLVRRIL--ACA 248

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFP 351
           PD L  D  ++        + L DQ+P
Sbjct: 249 PDYLSDDGVLICEVGN-SMVHLIDQYP 274


>gi|254447043|ref|ZP_05060510.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [gamma proteobacterium HTCC5015]
 gi|198263182|gb|EDY87460.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [gamma proteobacterium HTCC5015]
          Length = 285

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 20/138 (14%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-- 231
               L +   E++   P + I   + +            +L+L  G G  ++  A  F  
Sbjct: 85  WFCGLPFEVTEDTLI-PRSPIAELIQQQFSPWLPRPPQRVLDLCTGGGCIAIACAYAFPD 143

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            +V+  +I++ ++  AR N+AA+ +   ++  +SS  F+                     
Sbjct: 144 AQVVGTDISEAALAVARRNVAAHQLQG-RVQCLSSDVFSNV----------------EGC 186

Query: 292 FKTIFVDPPRSGLDDATV 309
           F  I  +PP    +D   
Sbjct: 187 FDLIVSNPPYVDAEDMAA 204


>gi|195023706|ref|XP_001985735.1| GH20919 [Drosophila grimshawi]
 gi|193901735|gb|EDW00602.1| GH20919 [Drosophila grimshawi]
          Length = 218

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 17/140 (12%)

Query: 195 NVHMLEWVLAAT---KGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYN 250
              +++W+L            +L+L CGNG F + LA   F ++  V+ +  ++E AR  
Sbjct: 41  QQRIVDWLLKQQQTLHKQSARVLDLGCGNGMFLIALANEGFIQLTGVDYSPKAIELARG- 99

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLD 305
           IA +H +N+        + TQ   +E +     DI      +  + + P      R+   
Sbjct: 100 IAQDHSHNIDY---KLADLTQ---KEPQSLGTFDIVHDKGTYDAVSLCPDNPKEMRTNYL 153

Query: 306 DATVGMVQ-AYPHILYISCN 324
           D    ++   +   +  SCN
Sbjct: 154 DNVARLLHDEHSWFIITSCN 173


>gi|182415768|ref|YP_001820834.1| methyltransferase type 12 [Opitutus terrae PB90-1]
 gi|177842982|gb|ACB77234.1| Methyltransferase type 12 [Opitutus terrae PB90-1]
          Length = 535

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 17/159 (10%)

Query: 171 LTVAGRTLIYRQIE---NSF--TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           L  +  T  Y +     +SF  TQPN    +  L + L A       +LEL C +G+  L
Sbjct: 7   LPSSDVTTAYDETPYPSSSFPQTQPNRLAAMARL-FGLDAASPANARVLELGCADGSNLL 65

Query: 226 VLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            LA  F +   L V+ +K  + AA+  I A  V NV++ R    +F     +   F+ + 
Sbjct: 66  PLAEQFPQASFLGVDSSKVQIAAAQSAITAGGVTNVEVRRQDILDFPADSGK---FDYIV 122

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
              ++S+    +     R  +       +     + Y+S
Sbjct: 123 AHGVYSWVPPAV-----REKVLAICRDHLTENG-VAYVS 155


>gi|124002114|ref|ZP_01686968.1| protoporphyrinogen oxidase [Microscilla marina ATCC 23134]
 gi|123992580|gb|EAY31925.1| protoporphyrinogen oxidase [Microscilla marina ATCC 23134]
          Length = 288

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRV 234
            L +R        P       ++ W++   +     LL++  G+G  ++ LA++    +V
Sbjct: 84  GLPFRVKPGVLI-PRPE-TEELVAWIIQDFQSQPLTLLDIGTGSGCIAVTLAKNMPQAQV 141

Query: 235 LAVEIAKPSVEAARYNIAANHVN 257
            A++++  ++  A+ N A N VN
Sbjct: 142 NALDVSNEALTIAQQNAALNKVN 164


>gi|325687100|gb|EGD29123.1| rRNA methylase [Streptococcus sanguinis SK72]
          Length = 183

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDIVVDATMGNGHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +N +++    +   Q
Sbjct: 66  DNAQLILAGHETLDQ 80


>gi|253997735|ref|YP_003049798.1| 50S ribosomal protein L11 methyltransferase [Methylovorus sp.
           SIP3-4]
 gi|253984414|gb|ACT49271.1| ribosomal protein L11 methyltransferase [Methylovorus sp. SIP3-4]
          Length = 295

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
             H+    LA        +L+  CG+G  ++  ++    +V+ V+I   +++++ +N   
Sbjct: 149 TTHLCLAWLADHVHKDLTVLDYGCGSGILAIAASKLGAGKVVGVDIDPQAIQSSEFNAEN 208

Query: 254 NHV 256
           N V
Sbjct: 209 NGV 211


>gi|256824037|ref|YP_003147997.1| ubiquinone/menaquinone biosynthesis methylase [Kytococcus
           sedentarius DSM 20547]
 gi|256687430|gb|ACV05232.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Kytococcus sedentarius DSM 20547]
          Length = 233

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           W+L      +G  L+L CG G  + +LA  F+ V   +I     EAA    A   + NV 
Sbjct: 36  WILTRLPARRGRALDLGCGRGELAALLAERFEHVHGTDIDPAMREAATRRCA--GLPNVS 93

Query: 261 IVRMSSKEFTQA 272
           I      +  + 
Sbjct: 94  IDDARLGQLAEG 105


>gi|254450152|ref|ZP_05063589.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Octadecabacter antarcticus 238]
 gi|198264558|gb|EDY88828.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Octadecabacter antarcticus 238]
          Length = 268

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 28/129 (21%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEI 239
            Q    +         ++E  LA       D+L+L  G+G   + L      V  + V++
Sbjct: 76  FQVTPDVLDPRGDTETLIEAALAVPFA---DVLDLGTGSGCILVTLLAERGAVTGIGVDV 132

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  +V  A  N     V +     +S              +  K + +    F  I  +P
Sbjct: 133 SPRAVTVAEQNALRLGVQDRCAFAVS--------------DWFKGVGVP---FDLIVSNP 175

Query: 300 PRSGLDDAT 308
           P   LD+  
Sbjct: 176 PYIALDEMA 184


>gi|115715498|ref|XP_784079.2| PREDICTED: similar to TRM5 tRNA methyltransferase 5 homolog (S.
           cerevisiae) [Strongylocentrotus purpuratus]
 gi|115955788|ref|XP_001190033.1| PREDICTED: similar to TRM5 tRNA methyltransferase 5 homolog (S.
           cerevisiae) [Strongylocentrotus purpuratus]
          Length = 456

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQ 271
           + +++ G G F++  A+    V A ++   S      N   N + + +K   +  ++F  
Sbjct: 241 VYDMFAGVGPFAIPAAKKGCEVHANDLNPESFRWLEVNAKQNKLSSRLKASNLDGRQFAV 300

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDP 299
            + +     + K+     Y+   I   P
Sbjct: 301 DIVKPDLITKAKE--GFKYKAHIIMNLP 326


>gi|1518113|gb|AAB49423.1| SLL2 [Brassica napus]
          Length = 337

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 27/180 (15%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ------PNAGINVHMLEWVLAATK 207
             +  ++    D V E +T   + L          Q       N  +N        A   
Sbjct: 109 HGHTGEVWFGDD-VMEIVTSWTKDLCVEIS-----QKEMSVSDNGEVNDQ------ADKY 156

Query: 208 GIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS- 265
               ++L+L  GN      LA+  F  +   + ++ +VE A++    +   N++ +    
Sbjct: 157 LSSWNVLDLGTGNCLLLHQLAKEGFSDLTGTDYSEGAVELAQHLSQRDGFPNIRFMVDDI 216

Query: 266 -SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
              +  +  +   +   L  I +H            R    D+   +V     ++  SCN
Sbjct: 217 LDTKLERQFKLVMDKGTLDAIGLHPDGPVK------RVMYWDSVSKLVAPGGILVITSCN 270


>gi|85860111|ref|YP_462313.1| SAM-dependent methyltransferase [Syntrophus aciditrophicus SB]
 gi|85723202|gb|ABC78145.1| SAM-dependent methyltransferase [Syntrophus aciditrophicus SB]
          Length = 261

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 193 GINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
            +   ++E +       Q   +L+L CG GN ++ LA    +V  V++A+  +  AR   
Sbjct: 24  AVECDLIEDIFRKFATAQVRTILDLGCGTGNHTIPLAYRGYQVTGVDLAEDMLNQARSKA 83

Query: 252 AANHVNNVKIVRMSSKEFT 270
            +     +   +   + F+
Sbjct: 84  VSLSKEQIVFHQGDLRRFS 102


>gi|326796324|ref|YP_004314144.1| ribosomal protein L11 methyltransferase [Marinomonas mediterranea
           MMB-1]
 gi|326547088|gb|ADZ92308.1| Ribosomal protein L11 methyltransferase [Marinomonas mediterranea
           MMB-1]
          Length = 295

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+ +        +++  CG+G   +  L     +++ ++I   +VEA R N   N++ 
Sbjct: 151 LEWLDSVDC-KDKTIIDYGCGSGILGVAGLLLGAKQMIGIDIDPQAVEATRANAERNNIE 209

Query: 258 NVKI 261
           + K 
Sbjct: 210 SSKY 213


>gi|322488321|emb|CBZ23568.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 440

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
           N      +       +  +LE+  G+G  S++ A+ +   V+AVE +      AR NIAA
Sbjct: 111 NEFYYNMLKRHIVPGESGVLEIGAGSGLLSMMAAKLNAKWVVAVEGSSEMASLARSNIAA 170

Query: 254 NHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           N +   +K++ M S E T      R+      I +       +  +     + DA   ++
Sbjct: 171 NGLQGKIKVLNMLSTELTP-----RDLPEPPSILVSEIFGTLLLGESALDYIADARQRLL 225

Query: 313 QAYPHIL 319
                IL
Sbjct: 226 PKTAKIL 232


>gi|320196585|gb|EFW71208.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           WV_060327]
          Length = 261

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 46/105 (43%), Gaps = 9/105 (8%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGTQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           N++ +  ++++    +           +D+  +     +V  PRS
Sbjct: 94  NMQFIHCAAQDVASHLE--------TPVDLILFHAVLEWVTDPRS 130


>gi|313201666|ref|YP_004040324.1| methyltransferase [Methylovorus sp. MP688]
 gi|312440982|gb|ADQ85088.1| methyltransferase [Methylovorus sp. MP688]
          Length = 197

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 13/108 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+     G+    L+L+ G G      L+R    V+ VE + P+  A + +  
Sbjct: 42  VRQTLFNWLGQDLHGM--RCLDLFSGTGALGFEALSRGACEVVMVEKSLPAFRALQASKT 99

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +   ++   + +   A              + +  F  IF+DPP
Sbjct: 100 LLGADGASLLNADAAQLLSA----------PSAKLEAGSFDVIFLDPP 137


>gi|313107326|ref|ZP_07793521.1| putative methyl transferase [Pseudomonas aeruginosa 39016]
 gi|310880023|gb|EFQ38617.1| putative methyl transferase [Pseudomonas aeruginosa 39016]
          Length = 276

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  LA        +L+L  G G  +L LA  R    V AV+  + +V  A  N  
Sbjct: 94  TELLVETALATLAAGTATVLDLGTGTGAIALALASERPLWTVTAVDRVEEAVALAERNRQ 153

Query: 253 ANHVNNVKIVR 263
              + NV++ R
Sbjct: 154 RLLLENVEVRR 164


>gi|294678698|ref|YP_003579313.1| methyltransferase small domain-containing protein [Rhodobacter
           capsulatus SB 1003]
 gi|294477518|gb|ADE86906.1| methyltransferase small domain protein [Rhodobacter capsulatus SB
           1003]
          Length = 253

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 52/154 (33%), Gaps = 29/154 (18%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           ++D RLTVA     YR          A ++  +L     A  G    +LEL CG G  SL
Sbjct: 12  FLDGRLTVAQPRQGYR----------AAMDPVLLAAACGAKPGQS--VLELGCGAGVASL 59

Query: 226 VLARHFDRVL--AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
            L      ++   +E+     + AR N AAN V  +++          A+R         
Sbjct: 60  CLGWRVKGLVQAGLELQPAYADLARRNAAANGVP-LEVFEGDLARMPAALRAR------- 111

Query: 284 DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                   +  +  +PP       T         
Sbjct: 112 -------NYDHVIANPPYFAASGGTAAADAGRER 138


>gi|291166898|gb|EFE28944.1| RNA methyltransferase, RsmD family [Filifactor alocis ATCC 35896]
          Length = 187

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 209 IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSS 266
              D+L+L+ G G  SL  L+R  +    V+  K SV   + N+     N    I     
Sbjct: 41  PSSDVLDLFGGTGVMSLEALSRGANSATIVDNHKDSVTLIKKNVGLCGANAQTTIFCGDY 100

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           ++F            L  I+    +F  IFVDPP  G
Sbjct: 101 RDF------------LAKINKTGNKFDIIFVDPPYQG 125


>gi|317053389|ref|YP_004119156.1| methyltransferase type 11 [Pantoea sp. At-9b]
 gi|316953128|gb|ADU72600.1| Methyltransferase type 11 [Pantoea sp. At-9b]
          Length = 223

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 16/142 (11%)

Query: 193 GINVHMLEWVLAATKGIQG--DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARY 249
                +  W+            +LE+ CGNG  +   LA     V  V++++ ++  A+ 
Sbjct: 29  KQQEKIFHWLDTHQHLPHPGSQVLEVGCGNGAMAAQYLAERGYSVWGVDLSETAIRWAKN 88

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
                 ++  + +        Q      E        I         +D  R        
Sbjct: 89  RFQQAGLS-AEFIVGDVCNIYQCQNSMFEM-------IIDGSCLHCLIDNARPLFFAEVR 140

Query: 310 GMVQAYPHILYIS-C----NPD 326
            +++     +  S C    NP+
Sbjct: 141 RLLKPGGRFVISSMCGTPRNPE 162


>gi|156057367|ref|XP_001594607.1| hypothetical protein SS1G_04414 [Sclerotinia sclerotiorum 1980]
 gi|154702200|gb|EDO01939.1| hypothetical protein SS1G_04414 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 257

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNG--NFSLVLARHFDRVLAVEI 239
            ++++       +   + +   ++T   +  +++L+ G G  + +  L+  +  ++A+E 
Sbjct: 69  TDDAWFGVTPEPVATQIAQDYASSTSPTKTTIIDLFAGAGGNSIAFALSNRWAHIIAIEK 128

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
               +  A  N       N+  V     E+ +
Sbjct: 129 DPSVIACAENNAYIYGATNINWVNGDCFEYLK 160


>gi|94266415|ref|ZP_01290111.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93452987|gb|EAT03483.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 277

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +       Q  +L++ CG G  +L LAR    V A++ A   +   +       ++N+  
Sbjct: 50  LAMFNWQPQWRVLDVGCGPGTLALPLARRVAAVTALDYAAGMLAELQKQQQEQGLSNITP 109

Query: 262 VRMSSKEFTQAM 273
           ++ + ++  Q +
Sbjct: 110 IQGAWEDDWQQL 121


>gi|71280110|ref|YP_266924.1| putative methyltransferase [Colwellia psychrerythraea 34H]
 gi|71145850|gb|AAZ26323.1| putative methyltransferase [Colwellia psychrerythraea 34H]
          Length = 212

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 11/118 (9%)

Query: 210 QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           Q + L+ + G+G+     L+R  D V  VE+ + +      N      +N+ ++  ++  
Sbjct: 66  QANCLDCFAGSGSLGFEALSRGADEVTLVELNRAAANQLLENKDLLKADNINVINDNALV 125

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMV----QAYPHILYI 321
           F +    +       D       F  +F+DPP R  L + T  ++     A   ++Y+
Sbjct: 126 FLKKDPLKVGLTAKSDKP-----FDLVFLDPPFRKQLVEQTAQLLNHFGLADQALIYV 178


>gi|15599859|ref|NP_253353.1| methyl transferase [Pseudomonas aeruginosa PAO1]
 gi|116052809|ref|YP_793126.1| putative methyl transferase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296391485|ref|ZP_06880960.1| putative methyl transferase [Pseudomonas aeruginosa PAb1]
 gi|9950919|gb|AAG08051.1|AE004880_7 probable methyl transferase [Pseudomonas aeruginosa PAO1]
 gi|115588030|gb|ABJ14045.1| putative methyl transferase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 276

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  LA        +L+L  G G  +L LA  R    V AV+  + +V  A  N  
Sbjct: 94  TELLVETALATLAADTATVLDLGTGTGAIALALASERPLWTVTAVDRVEEAVALAERNRQ 153

Query: 253 ANHVNNVKIVR 263
              + NV++ R
Sbjct: 154 RLLLENVEVRR 164


>gi|332527944|ref|ZP_08403978.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rubrivivax
           benzoatilyticus JA2]
 gi|332112518|gb|EGJ12311.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Rubrivivax
           benzoatilyticus JA2]
          Length = 224

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             I   +L+            +LE+  G+G  + +LA    +V  +E     V  AR N+
Sbjct: 67  PKIQARLLQ---ELQVQRHEKVLEIGTGSGFMAALLAHRAQQVWTLECRSALVAQARENL 123

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFN 280
               V  V++V +++++  + +  E  F+
Sbjct: 124 RRAGVTTVRVVEVTAEDGARGLPAEAPFD 152


>gi|315639135|ref|ZP_07894301.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
 gi|315480772|gb|EFU71410.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 34/62 (54%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              ++++ CG G ++L LA     +LA++ +K  +   + + +   + N+K V +S ++F
Sbjct: 38  DKSVIDIGCGTGVWTLHLAHEAKNLLALDNSKAMLTILQEDASKLGLGNIKSVNLSFEDF 97

Query: 270 TQ 271
            +
Sbjct: 98  IK 99


>gi|310795749|gb|EFQ31210.1| methyltransferase domain-containing protein [Glomerella graminicola
           M1.001]
          Length = 264

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 15/140 (10%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF----DRVLAVEIAKPSVE 245
            N       L  +          +L++ CG GN +  +A         V+ V+ +   + 
Sbjct: 17  VNDTQYATGLFLLDKLAVVPGERVLDVGCGPGNITAHIADLVTPGGGLVVGVDPSPERIA 76

Query: 246 AARYNIAANHVNNVKIVRMSSKEF-------TQAMRREREFNRLKDIDIHSYRFKTIFVD 298
            AR         N++     +++           +     F+ ++D    +  F  +   
Sbjct: 77  LARK----LERPNLEFHVGRAEDLSRFAAASFDVIYVNSTFHWVQDQPAAAAEFARVLRP 132

Query: 299 PPRSGLDDATVGMVQAYPHI 318
             R G+   +   V A+  I
Sbjct: 133 GGRLGISGGSGDFVAAHEVI 152


>gi|307704778|ref|ZP_07641674.1| protein-glutamine-N5 methyltransferase [Streptococcus mitis SK597]
 gi|307621687|gb|EFO00728.1| protein-glutamine-N5 methyltransferase [Streptococcus mitis SK597]
          Length = 278

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 66/175 (37%), Gaps = 35/175 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+   +L V  R LI R                ++E +LA     
Sbjct: 61  QLAAHKPAQYIIGQADFYGMQLKVDERVLIPRPE-----------TEELVELILAENPET 109

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A +I++ +++ A  N       N++I    S 
Sbjct: 110 NLSVLDIGTGSGAIALALAKNRPDWSVKAADISQDALDVASENAKN---QNLQIFLKKSD 166

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGMVQAYPHIL 319
            FT+                 S ++  I  +PP   R    +  + ++ + PH+ 
Sbjct: 167 CFTE----------------ISEKYDIIVSNPPYISREDESEVGLNVLHSEPHLA 205


>gi|292654936|ref|YP_003534833.1| N-methyltransferase-like protein [Haloferax volcanii DS2]
 gi|291371657|gb|ADE03884.1| N-methyltransferase-like protein [Haloferax volcanii DS2]
          Length = 251

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 200 EWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           E VLAA   ++  ++LE+ CG G F+++LA+    V+ ++I++  +   R         +
Sbjct: 34  EAVLAALGPVEDKNILEIACGTGRFTVMLAQEGANVVGLDISRAMMVQGREKARRAGVAD 93

Query: 258 NVKIVRMSSKEF 269
            ++ +R  +   
Sbjct: 94  RIEFLRGDAARL 105


>gi|281178052|dbj|BAI54382.1| S-adenosylmethionine-dependent methltransferase [Escherichia coli
           SE15]
          Length = 261

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEIGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|240102588|ref|YP_002958897.1| SAM-dependent rRNA adenine methyltransferase, putative
           [Thermococcus gammatolerans EJ3]
 gi|239910142|gb|ACS33033.1| SAM-dependent rRNA adenine methyltransferase, putative
           [Thermococcus gammatolerans EJ3]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 29/134 (21%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYN 250
           +   +L    +A   ++  + +L  G G   L +       ++V AVE+   ++E A+ N
Sbjct: 32  VAAELLWLAHSAGDIVEKVVADL--GTGTGVLAIGAKLLGAEKVYAVEVDPKALEVAKRN 89

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDD 306
              + V  V+ ++    EF++                   R  T+ ++PP    + G D 
Sbjct: 90  AERSGVE-VEFIQADVSEFSE-------------------RVDTVVMNPPFGSQKKGADR 129

Query: 307 ATVGMVQAYPHILY 320
             +       + +Y
Sbjct: 130 PFLLKAFEVSNTVY 143


>gi|291298746|ref|YP_003510024.1| methyltransferase small [Stackebrandtia nassauensis DSM 44728]
 gi|290567966|gb|ADD40931.1| methyltransferase small [Stackebrandtia nassauensis DSM 44728]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 20/117 (17%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A   G  G  L+L CG G  ++ LA      V AV++ + + +    N       +   V
Sbjct: 55  APLPGRPGAYLDLGCGYGPVTMALAESSGGEVTAVDVNERARQLTADNAHRLGFGDRVRV 114

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
                                +      RF  I+ +PP R G +     +++  P +
Sbjct: 115 YA------------------PEEVPPGQRFDEIWSNPPIRVGKEALHELLLEWLPRL 153


>gi|229072795|ref|ZP_04205994.1| Protein hemK [Bacillus cereus F65185]
 gi|228710286|gb|EEL62261.1| Protein hemK [Bacillus cereus F65185]
          Length = 283

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA   +   V  V+IA+ S+E A+ N  A  
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENENLHVYTVDIAQESIEVAKENAKALG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFHKTGQKLDVVVSNPP 190


>gi|226363566|ref|YP_002781348.1| methyltransferase [Rhodococcus opacus B4]
 gi|226242055|dbj|BAH52403.1| putative methyltransferase [Rhodococcus opacus B4]
          Length = 260

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIA 252
              ++E   A        +++L CG+G     LA   D   + AV+I   +V  AR N+A
Sbjct: 82  TAFLVEQAAALACP-HAVVVDLCCGSGAVGAALADTLDGIELYAVDIDPAAVRCARRNLA 140


>gi|297202391|ref|ZP_06919788.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sviceus ATCC 29083]
 gi|197710088|gb|EDY54122.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sviceus ATCC 29083]
          Length = 281

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARH 230
             R L  +     F          ++ W + A +    ++  +++L  G+G  +L LA+ 
Sbjct: 75  YFRYLELQVGPGVF--VPRPETESVVGWAIDAVRAMDVVEPCIVDLCTGSGAIALALAQE 132

Query: 231 F--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               RV AVE+++ ++   R N+  + V+  +   + +
Sbjct: 133 VPRSRVHAVELSEEALRWTRKNVEGSRVDLRQGNALDA 170


>gi|157364267|ref|YP_001471034.1| methyltransferase small [Thermotoga lettingae TMO]
 gi|157314871|gb|ABV33970.1| methyltransferase small [Thermotoga lettingae TMO]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 24/117 (20%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           ++E  +         +L+L CG G   +V+   +    V   ++ + +VE AR N   N+
Sbjct: 59  LVEHAIVH----GKKVLDLGCGYGVVGIVVKGEYPDSEVYMSDVNERAVEFARINAKDNN 114

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           V+    V +    F    + E              +F  I ++PP +      + M+
Sbjct: 115 VD----VTIKCGSFYDPWQEE--------------KFDVILLNPPMAAGKATVLRMI 153


>gi|308807833|ref|XP_003081227.1| MET-10+related protein-like (ISS) [Ostreococcus tauri]
 gi|116059689|emb|CAL55396.1| MET-10+related protein-like (ISS) [Ostreococcus tauri]
          Length = 1020

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           E    A  G  G+ +++L+ G G ++L L ++    +V A E    S EA RYN+  N +
Sbjct: 463 EKQRMANIGADGETIVDLFAGIGYYTLQLLKNAGAAKVYACEWNPNSCEALRYNLRVNGL 522

Query: 257 NN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            +  +++   ++        +R    L      S+      + P
Sbjct: 523 ESKCEVLEGDNRRVAPIGVADRVLLGLLPHAEMSWETALKALKP 566


>gi|114567096|ref|YP_754250.1| 50S ribosomal protein L11 methyltransferase-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|122317910|sp|Q0AWM5|PRMA_SYNWW RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|114338031|gb|ABI68879.1| LSU ribosomal protein L11P methyltransferase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 307

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +         L++  CG+G  S+  A+    RVLA+++ + SV+ AR N+  N ++++  
Sbjct: 163 IDHYVKGGEKLIDAGCGSGILSIAAAKLGAARVLAMDVEELSVKIARENVELNGLSDIIT 222

Query: 262 VRM 264
           V++
Sbjct: 223 VKL 225


>gi|107099669|ref|ZP_01363587.1| hypothetical protein PaerPA_01000687 [Pseudomonas aeruginosa PACS2]
          Length = 276

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  LA        +L+L  G G  +L LA  R    V AV+  + +V  A  N  
Sbjct: 94  TELLVETALATLAADTATVLDLGTGTGAIALALASERPLWTVTAVDRVEEAVALAERNRQ 153

Query: 253 ANHVNNVKIVR 263
              + NV++ R
Sbjct: 154 RLLLENVEVRR 164


>gi|94263270|ref|ZP_01287086.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93456353|gb|EAT06477.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 278

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +       Q  +L++ CG G  +L LAR    V A++ A   +   +       ++N+  
Sbjct: 50  LAMFNWQPQWRVLDVGCGPGTLALPLARRVAAVTALDYAAGMLAELQKQQQEQGLSNITP 109

Query: 262 VRMSSKEFTQAM 273
           ++ + ++  Q +
Sbjct: 110 IQGAWEDDWQQL 121


>gi|88601521|ref|YP_501699.1| hypothetical protein Mhun_0207 [Methanospirillum hungatei JF-1]
 gi|88186983|gb|ABD39980.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 287

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT-KGIQGDLLELYC 218
             + RDY  +  T   +   Y +   S    N      +LE +           ++E+  
Sbjct: 21  TIMKRDYAVDDWTTRSQD--YSESRRS---NNYEYGNKVLEVLRKRHLVSSDSQVIEVGS 75

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           G G F +  A H     AVE AK  +E  R N   + + N  I+
Sbjct: 76  GPGTFVIPFAPHVGHYTAVEPAKGMIERIRENANESGITNYTII 119


>gi|54027760|ref|YP_122001.1| putative methyltransferase [Nocardia farcinica IFM 10152]
 gi|54019268|dbj|BAD60637.1| putative methyltransferase [Nocardia farcinica IFM 10152]
          Length = 272

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
              +L+L CG G  +L LA     V AV+     +        A  ++N+      S
Sbjct: 40  TQQVLDLGCGTGQIALRLAPLVAHVHAVDPDTQMLHEGAKLATAAGIDNISWREGDS 96


>gi|218893761|ref|YP_002442630.1| putative methyl transferase [Pseudomonas aeruginosa LESB58]
 gi|254238596|ref|ZP_04931919.1| hypothetical protein PACG_04751 [Pseudomonas aeruginosa C3719]
 gi|126170527|gb|EAZ56038.1| hypothetical protein PACG_04751 [Pseudomonas aeruginosa C3719]
 gi|218773989|emb|CAW29804.1| probable methyl transferase [Pseudomonas aeruginosa LESB58]
          Length = 276

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  LA        +L+L  G G  +L LA  R    V AV+  + +V  A  N  
Sbjct: 94  TELLVETALATLAADTATVLDLGTGTGAIALALASERPLWTVTAVDRVEEAVALAERNRQ 153

Query: 253 ANHVNNVKIVR 263
              + NV++ R
Sbjct: 154 RLLLENVEVRR 164


>gi|57506023|ref|ZP_00371946.1| ribosomal protein L11 methyltransferase, putative [Campylobacter
           upsaliensis RM3195]
 gi|57015631|gb|EAL52422.1| ribosomal protein L11 methyltransferase, putative [Campylobacter
           upsaliensis RM3195]
          Length = 281

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 15/114 (13%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN--------VHMLEWVLAATKGIQG 211
           I +D+ Y+      A +  +         Q N  +          H    +L        
Sbjct: 94  ILIDQIYIHTTWQKAKKGFL-------NIQINPALAFGSGHHESTHSCIELLQKFAKKDM 146

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             L+L CG+G  +++LA+   RV   +  + ++++A  N   N+V+     + S
Sbjct: 147 KALDLGCGSGILAIILAKFGLRVDICDTDELALKSALNNAKLNNVSFCNAWQGS 200


>gi|317052430|ref|YP_004113546.1| hypothetical protein Selin_2270 [Desulfurispirillum indicum S5]
 gi|316947514|gb|ADU66990.1| hypothetical protein Selin_2270 [Desulfurispirillum indicum S5]
          Length = 297

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 176 RTLIYRQIENSFTQP--NAGINVHMLEWV--LAATKGIQGDLLELYCGNGNFSLVLARHF 231
           +   +R     F           +   W   +         LL L+   G  S+V A+  
Sbjct: 89  QDYRFRVRPTDFKHTGLFPEQAANW-SWFGPIIRQSQRPFSLLNLFGYTGAASIVAAKSG 147

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
             V  V+ AK  V+  R N + N +     + +     +F Q     RE  R        
Sbjct: 148 AAVCHVDAAKGMVQWCRENASLNGLQEAPIRYIVDDCIKFVQ-----REIRR-------G 195

Query: 290 YRFKTIFVDPPRSGLDDA 307
             +  I +DPP  G   +
Sbjct: 196 STYDAIIMDPPSYGRGKS 213


>gi|284041963|ref|YP_003392303.1| methyltransferase small [Conexibacter woesei DSM 14684]
 gi|283946184|gb|ADB48928.1| methyltransferase small [Conexibacter woesei DSM 14684]
          Length = 372

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 20/103 (19%)

Query: 200 EWVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
            W+    A  G     L+L  G+G  + +L       +AVEI     EAAR+N   N + 
Sbjct: 147 YWMARFTANLGPVERALDLCTGSGLLASLL--DARHTVAVEIDPDVAEAARFNAILNGLE 204

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             + + + + +   A+  ER              F+ I  +PP
Sbjct: 205 --ERIDVRAGDLYAAVPGER--------------FELIVANPP 231


>gi|255523593|ref|ZP_05390560.1| Methyltransferase type 11 [Clostridium carboxidivorans P7]
 gi|255512648|gb|EET88921.1| Methyltransferase type 11 [Clostridium carboxidivorans P7]
          Length = 249

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           ++ +  +    +          +L+L CG G  +  LA+    V+ ++ +   ++ A+ N
Sbjct: 12  HSFVAEYGKSMIDLVNVEKDQKILDLGCGTGILTNELAKEGATVIGIDSSTDMIKKAKLN 71

Query: 251 IAANHVNNVKIVRMSSKEF 269
                  N+      +   
Sbjct: 72  -----YPNLNFQVADATNL 85


>gi|254787711|ref|YP_003075140.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Teredinibacter turnerae T7901]
 gi|237685052|gb|ACR12316.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Teredinibacter turnerae T7901]
          Length = 277

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 19/94 (20%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            +  +L+L  G G  +L LA       ++AV+ +  +V+ A  N A     NV+I++   
Sbjct: 109 PKQRVLDLGTGTGAIALALASELSDAVIVAVDKSPEAVKLALRNQARLGFTNVEILQSD- 167

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                       ++ L D       F  I  +PP
Sbjct: 168 -----------WYSALGDQ-----HFDVIVANPP 185


>gi|229578777|ref|YP_002837175.1| Methyltransferase type 11 [Sulfolobus islandicus Y.G.57.14]
 gi|228009491|gb|ACP45253.1| Methyltransferase type 11 [Sulfolobus islandicus Y.G.57.14]
          Length = 187

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++L CG G F+ +LAR    V AV+  + ++   +  +    +NNV      +++   
Sbjct: 44  TVVDLGCGPGFFTTILARIVKTVYAVDPDERAIRRLKEKVQKLSLNNVIPYVAPAQKL-- 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                 EF + K ID   +    +      +G       +++    + YIS
Sbjct: 102 ------EFIKDKSIDFV-FSNLMLCCTSDHNGAIKEIKRILKDNG-LAYIS 144


>gi|227827056|ref|YP_002828835.1| methyltransferase type 11 [Sulfolobus islandicus M.14.25]
 gi|229584224|ref|YP_002842725.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.27]
 gi|227458851|gb|ACP37537.1| Methyltransferase type 11 [Sulfolobus islandicus M.14.25]
 gi|228019273|gb|ACP54680.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.27]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++L CG G F+ +LAR    V AV+  + ++   +  +    +NNV      +++   
Sbjct: 44  TVVDLGCGPGFFTTILARIVKTVYAVDPDERAIRRLKEKVQKLSLNNVIPYVAPAQKL-- 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                 EF + K ID   +    +      +G       +++    + YIS
Sbjct: 102 ------EFIKDKSIDFV-FSNLMLCCTSDHNGAIKEIKRILKDNG-LAYIS 144


>gi|195497588|ref|XP_002096164.1| GE25528 [Drosophila yakuba]
 gi|194182265|gb|EDW95876.1| GE25528 [Drosophila yakuba]
          Length = 607

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 21/126 (16%)

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           R    S+               LA        +++ +CG G  ++  A    RV+AV+I 
Sbjct: 416 RLDRESWFSVTPEKIAKQTARRLACDV-----IIDAFCGCGGNAIQFANTCGRVIAVDID 470

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              +  A++N     V + ++ +     +F    +                R   +F+ P
Sbjct: 471 AEKLAMAKHNAGIYGVAHKIEFINADFLQFAATTK---------------LRPNVVFLSP 515

Query: 300 PRSGLD 305
           P  G D
Sbjct: 516 PWGGPD 521


>gi|157151080|ref|YP_001450937.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075874|gb|ABV10557.1| methyltransferase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 184

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDIVVDATMGNGHDTLFLAKLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +N +++    +   Q
Sbjct: 66  DNAQLILAGHETLDQ 80


>gi|229582474|ref|YP_002840873.1| Methyltransferase type 11 [Sulfolobus islandicus Y.N.15.51]
 gi|238619204|ref|YP_002914029.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.4]
 gi|228013190|gb|ACP48951.1| Methyltransferase type 11 [Sulfolobus islandicus Y.N.15.51]
 gi|238380273|gb|ACR41361.1| Methyltransferase type 11 [Sulfolobus islandicus M.16.4]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++L CG G F+ +LAR    V AV+  + ++   +  +    +NNV      +++   
Sbjct: 44  TVVDLGCGPGFFTTILARIVKTVYAVDPDERAIRRLKEKVQKLSLNNVIPYVAPAQKL-- 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                 EF + K ID   +    +      +G       +++    + YIS
Sbjct: 102 ------EFIKDKSIDFV-FSNLMLCCTSDHNGAIKEIKRILKDNG-LAYIS 144


>gi|15898819|ref|NP_343424.1| hypothetical protein SSO2027 [Sulfolobus solfataricus P2]
 gi|227829825|ref|YP_002831604.1| Methyltransferase type 11 [Sulfolobus islandicus L.S.2.15]
 gi|284997095|ref|YP_003418862.1| Methyltransferase type 11 [Sulfolobus islandicus L.D.8.5]
 gi|13815308|gb|AAK42214.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|227456272|gb|ACP34959.1| Methyltransferase type 11 [Sulfolobus islandicus L.S.2.15]
 gi|284444990|gb|ADB86492.1| Methyltransferase type 11 [Sulfolobus islandicus L.D.8.5]
          Length = 189

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++L CG G F+ +LAR    V AV+  + ++   +  +    +NNV      +++   
Sbjct: 44  TVVDLGCGPGFFTTILARIVKTVYAVDPDERAIRRLKEKVQKLSLNNVIPYVAPAQKL-- 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                 EF + K ID   +    +      +G       +++    + YIS
Sbjct: 102 ------EFIKDKSIDFV-FSNLMLCCTSDHNGAIKEIKRILKDNG-LAYIS 144


>gi|330375637|gb|AEC13064.1| methyltransferase [Streptomyces pulveraceus]
          Length = 284

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 17/140 (12%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E  + L D L A + +   +   +  K   DR Y D            R     F     
Sbjct: 32  EDVLALLDRLFASEPEAGRLATGDG-KDFWDRFYAD------------RSRPVPFFVAKP 78

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
             N+      L       G  L+L  G G  +L LA H   V AV+++  +V        
Sbjct: 79  DENLAAY---LDHGLIAPGRALDLGSGPGRNALYLASHGFEVDAVDLSPVAVAWGEDRAH 135

Query: 253 ANHVNNVKIVRMSSKEFTQA 272
              V+ V+ +   +     A
Sbjct: 136 EAGVD-VRFLCGDAFALPAA 154


>gi|328885060|emb|CCA58299.1| Methylase of polypeptide chain release factors [Streptomyces
           venezuelae ATCC 10712]
          Length = 281

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 40/189 (21%)

Query: 129 DAWRECAIRLRDALHARKY-QIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSF 187
            + R  A  L   +H  K  ++  +  A+      D  Y +       R  +      +F
Sbjct: 21  PSPRFDAEELAAFVHGVKRGELHNVKDAD-----FDARYWETVARREAREPLQHITGRAF 75

Query: 188 T-----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARHF-- 231
                 Q   G+         ++ W + A +    ++  +++L  G+G  +L +A+    
Sbjct: 76  FRYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPLIVDLCTGSGAIALAMAQEVPR 135

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            RV AVE++  ++   R N      + V + +  +             + L ++D    +
Sbjct: 136 SRVHAVELSDDALVWTRKNAEG---SRVTVHQGDA------------LSALPELD---GQ 177

Query: 292 FKTIFVDPP 300
              +  +PP
Sbjct: 178 VDLVISNPP 186


>gi|325958522|ref|YP_004289988.1| type 11 methyltransferase [Methanobacterium sp. AL-21]
 gi|325329954|gb|ADZ09016.1| Methyltransferase type 11 [Methanobacterium sp. AL-21]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARY 249
           + I   +L W   A   I+G  L +L CG G F++  A    + V+ V+    +V  A  
Sbjct: 32  SVIAADLL-WNAMAIGDIEGLKLADLGCGTGIFTIGAALLGANEVVGVDTDSEAVSIAET 90

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             +  ++ N + V     +FT+ +    +         +      IF+D 
Sbjct: 91  ESSKRNLENTRFVVSEITDFTEEVDTVIQNPPFGAQKSNKTAADVIFLDK 140


>gi|312115017|ref|YP_004012613.1| methyltransferase type 11 [Rhodomicrobium vannielii ATCC 17100]
 gi|311220146|gb|ADP71514.1| Methyltransferase type 11 [Rhodomicrobium vannielii ATCC 17100]
          Length = 255

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 10/101 (9%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
             A        +LE  CG G  SL L        V  VEI       AR N   N +   
Sbjct: 36  AAACPAQAGERVLEAGCGAGAASLCLLARVPGVSVTGVEIDAGLAALARENATENDL--A 93

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +++ + T +         L+   +    +  +  +PP
Sbjct: 94  AQFTIANADLTASW------TELEAAGLFREAYDHVIANPP 128


>gi|229159111|ref|ZP_04287162.1| Methyltransferase [Bacillus cereus ATCC 4342]
 gi|228624378|gb|EEK81154.1| Methyltransferase [Bacillus cereus ATCC 4342]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A  N+  + V NV+  
Sbjct: 39  VKERCKLTDTLLDVGTGGGENVLNIASSAKLLIGIDNSNGMIETAHSNLKISGVKNVEFF 98

Query: 263 RMSSKEFT 270
           +M+S+  T
Sbjct: 99  QMNSEALT 106


>gi|289425973|ref|ZP_06427720.1| methyltransferase small domain protein [Propionibacterium acnes
           SK187]
 gi|289427910|ref|ZP_06429614.1| methyltransferase small domain protein [Propionibacterium acnes
           J165]
 gi|295131577|ref|YP_003582240.1| methyltransferase small domain protein [Propionibacterium acnes
           SK137]
 gi|289153516|gb|EFD02230.1| methyltransferase small domain protein [Propionibacterium acnes
           SK187]
 gi|289158793|gb|EFD06993.1| methyltransferase small domain protein [Propionibacterium acnes
           J165]
 gi|291375976|gb|ADD99830.1| methyltransferase small domain protein [Propionibacterium acnes
           SK137]
 gi|332676445|gb|AEE73261.1| putative rRNA small subunit methyltransferase [Propionibacterium
           acnes 266]
          Length = 334

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  ++++      AN 
Sbjct: 181 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAIDSTHLTAQANQ 240

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           ++ V                         +DI +     +  +PP     +     T+ M
Sbjct: 241 LDIVTHWCDGL------------------VDIPNESVDVVVTNPPFHRGTAQDHAPTLAM 282

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 283 LADAARVL 290


>gi|209573230|sp|A1K4F0|PIMT_AZOSB RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
          Length = 217

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           +V+E L  +        +   F Q      +   M+E +L +     G +LE+  G G  
Sbjct: 43  FVEEGLAYSAYDDTA--LPIGFQQTISQPYVVARMIE-LLRSGGRQLGRVLEIGAGCGYQ 99

Query: 224 SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           + VL+     V AVE  +P ++ AR N+    + N   VR+   + T  +     F  + 
Sbjct: 100 AAVLSTLATEVYAVERIRPLLDKARANLRPLRLPN---VRLKHADGTLGLPEAAPFESII 156

Query: 284 DIDIHSYRFKTI 295
                      +
Sbjct: 157 VAAAAGGVPNAL 168


>gi|328886382|emb|CCA59621.1| Methyltransferase [Streptomyces venezuelae ATCC 10712]
          Length = 281

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           D+L++ CG G  +  LA      RV AV+ A+  +  AR   A   + NV+      
Sbjct: 52  DVLDVGCGPGTITADLAALVAPGRVTAVDAAEGVLANARAVAAERGLGNVEFAVADV 108


>gi|326776958|ref|ZP_08236223.1| Methyltransferase type 12 [Streptomyces cf. griseus XylebKG-1]
 gi|326657291|gb|EGE42137.1| Methyltransferase type 12 [Streptomyces cf. griseus XylebKG-1]
          Length = 361

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D+L++  G G+   +LAR F   R   V++++  + AAR       + N +     +   
Sbjct: 182 DVLDVGTGQGHAVNLLARAFPAGRFTGVDMSRSGIAAARDEAERLGLPNARFEVADAAGV 241

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIF 296
           T        F+ + D+   +     + 
Sbjct: 242 TGGYDLVTAFDVVHDLARPAETLAAVA 268


>gi|119899830|ref|YP_935043.1| methyltransferase [Azoarcus sp. BH72]
 gi|119672243|emb|CAL96157.1| hypothetical methyltransferase [Azoarcus sp. BH72]
          Length = 294

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 212 DLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L+L C  G  +   AR      V  ++++  S+E AR       + N++     ++ +
Sbjct: 116 RILDLGCNIGYLTSWYARCRPGAEVWGIDVSPSSIEQARRFATRLGLANLRYAATDARRY 175

Query: 270 TQ 271
             
Sbjct: 176 VA 177


>gi|20090300|ref|NP_616375.1| dimethyladenosine transferase [Methanosarcina acetivorans C2A]
 gi|27151576|sp|Q8TQU8|RSMA_METAC RecName: Full=Probable ribosomal RNA small subunit
           methyltransferase A; AltName: Full=16S rRNA
           dimethyladenosine transferase; AltName: Full=16S rRNA
           dimethylase; AltName:
           Full=S-adenosylmethionine-6-N',N'-adenosyl(rRNA)
           dimethyltransferase
 gi|19915300|gb|AAM04855.1| dimethyladenosine rRNA methyltransferase [Methanosarcina
           acetivorans C2A]
          Length = 269

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 179 IYRQIENSFTQPNAGINVHMLEW-VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
            Y     +F Q +  I++  L+  V+AA    Q  +LE+  G GN +  LAR   +V+AV
Sbjct: 8   KYNIKGGTFDQ-HFLIDIGYLDRIVVAAELSPQDTILEIGAGIGNLTERLARRAKKVIAV 66

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           E+    V         + V N++++   + + 
Sbjct: 67  ELDPALVSVLHD--RFDKVENIEVIAGDALKV 96


>gi|323453306|gb|EGB09178.1| hypothetical protein AURANDRAFT_58958 [Aureococcus anophagefferens]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             L+ +CG+G+  +  L+R       V++++ + + A  N  A   ++V+ +  ++++  
Sbjct: 25  RALDTFCGSGSVGVEALSRGAAAATFVDLSRDACDVALRNARACAFDDVEAICATAEDAL 84

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                         +     RF  + + PP
Sbjct: 85  AT----------PALHGGDRRFDLVTLTPP 104


>gi|257455393|ref|ZP_05620628.1| ribosomal protein L11 methyltransferase [Enhydrobacter aerosaccus
           SK60]
 gi|257447355|gb|EEV22363.1| ribosomal protein L11 methyltransferase [Enhydrobacter aerosaccus
           SK60]
          Length = 302

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 13/123 (10%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++W+       +  +++  CG+G   +  L     +V AV+I   +V A   N   N V 
Sbjct: 146 IDWLTEQPLQGK-VVIDYGCGSGILGIAALLLGAKQVYAVDIDPQAVLATHQNAERNKVA 204

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI-FVDPPRSGLDDATVGMVQAYP 316
           N            QA   E+  +  K+  I      T   +  P   L      ++++  
Sbjct: 205 NQ----------LQAFLPEQFSDYCKEQAILPVDLITANILAKPLMSLAPYFATLLKSQG 254

Query: 317 HIL 319
            I+
Sbjct: 255 SIV 257


>gi|304316646|ref|YP_003851791.1| ribosomal protein L11 methyltransferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778148|gb|ADL68707.1| ribosomal protein L11 methyltransferase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 308

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L         + ++ CG G  S+V ++    +V AV++   +++ A  N+  
Sbjct: 159 TTKMCIEFLEDYVKPNNVVFDVGCGTGILSIVSSKLGAKKVYAVDLDDVAIKVASLNVKL 218

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           N+++N+++++                N + DI I + 
Sbjct: 219 NNLDNIEVLKSDLLHELTGKADLIVANIIADIIIKAT 255


>gi|261821328|ref|YP_003259434.1| metallothionein SmtA [Pectobacterium wasabiae WPP163]
 gi|261605341|gb|ACX87827.1| Methyltransferase type 11 [Pectobacterium wasabiae WPP163]
          Length = 261

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           L+ +LA        +L+   G G  +  LA    +VL  +++   ++ A+   AA    +
Sbjct: 34  LDGLLAQLPPRPLYILDAGGGEGQMACRLAALGHQVLLCDVSDEMIQRAKNAAAAQGVAH 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ V+ ++++  Q M    + 
Sbjct: 94  NIRFVQCAAQDIAQYMESPADL 115


>gi|303312089|ref|XP_003066056.1| trimethylguanosine synthase, putative [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105718|gb|EER23911.1| trimethylguanosine synthase, putative [Coccidioides posadasii C735
           delta SOWgp]
          Length = 240

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEI 239
            ++++       I   +  ++ AA    +  +++ + G G  ++  AR     RV A+E 
Sbjct: 46  TDDAWFGVTPEPIANKIAAYMTAAAPQKKSIVIDTFAGVGGNAIAFARSNKWRRVYAIEK 105

Query: 240 AKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRERE----FNRLKDIDIHSYRFKT 294
              S++ A++N     V + +   +    E  +   ++                 YR   
Sbjct: 106 DPASLQCAKHNAKIYGVEDKITWFQGDCFEILKTQLKDLAPYSVIFASPPWGGPGYRSDK 165

Query: 295 IFV 297
           +F 
Sbjct: 166 VFN 168


>gi|226952290|ref|ZP_03822754.1| 3-demethylubiquinone-9 3-methyltransferase and
           2-octaprenyl-6-hydroxy phenol methylase [Acinetobacter
           sp. ATCC 27244]
 gi|226836956|gb|EEH69339.1| 3-demethylubiquinone-9 3-methyltransferase and
           2-octaprenyl-6-hydroxy phenol methylase [Acinetobacter
           sp. ATCC 27244]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+     G+ G  +L++ CG G  +  +AR    VL +++ +  +   R +
Sbjct: 32  HQINPLRLNWIDERVGGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLAVGRLH 91

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V N++  ++  ++       + +     ++  H     +I 
Sbjct: 92  AQQENVQNIEYRQIPVEQLALEQAGQYDVVTCMEMMEHVPDPVSIV 137


>gi|220936044|ref|YP_002514943.1| methyltransferase small [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997354|gb|ACL73956.1| methyltransferase small [Thioalkalivibrio sp. HL-EbGR7]
          Length = 195

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           G   D L+L CG G   L LAR     R   V+    +V+ +  N   N + N +  
Sbjct: 53  GEADDCLDLGCGYGPIGLTLARLAPKGRTCLVDKDFVAVDYSNKNARINGIGNAEAF 109


>gi|170703050|ref|ZP_02893876.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           IOP40-10]
 gi|170132042|gb|EDT00544.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 283

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--SVEAARYNIAAN 254
            ++E ++ A+    G +L+ + G+G  ++  AR     +  EI +   ++   R N  A 
Sbjct: 220 EIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYCAIAHERVNALAA 279

Query: 255 HV 256
             
Sbjct: 280 QA 281


>gi|167379517|ref|XP_001735171.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165902964|gb|EDR28651.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 382

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L + + G G F++  A    +V A ++   +V+  R N   N+   ++   M ++++ + 
Sbjct: 218 LCDAFAGVGPFAIPAALKGVKVYANDLNPTAVKYMRINA-VNNKTTIECDNMDARDYLRK 276

Query: 273 MRRER 277
           +  E+
Sbjct: 277 IVIEK 281


>gi|163854148|ref|YP_001642191.1| methyltransferase type 11 [Methylobacterium extorquens PA1]
 gi|163665753|gb|ABY33120.1| Methyltransferase type 11 [Methylobacterium extorquens PA1]
          Length = 259

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF--- 269
           +L+L CG G+ +  +A     V ++++++  ++A         + NV   R S +     
Sbjct: 48  VLDLGCGGGHVTYAVAPEVRSVTSLDLSQSMLDAVAAEAQRRGLANVATRRASVEALPFA 107

Query: 270 ---TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                ++      +   D+         +     R GL D  
Sbjct: 108 DASFDSVVSRYSAHHWGDVPAALREAHRVLAPGGRFGLVDVV 149


>gi|15606087|ref|NP_213464.1| hypothetical protein aq_674 [Aquifex aeolicus VF5]
 gi|2983274|gb|AAC06868.1| hypothetical protein aq_674 [Aquifex aeolicus VF5]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 18/133 (13%)

Query: 172 TVAGRTLIYRQIENSFTQP-NAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLAR 229
           T   + + + + +  F QP    I+V ++ ++       +   +++L  G G  S+ LA+
Sbjct: 4   TDNSKPVPFFRGKLKFFQPKEHKISVDLVLFLSKIKPPKRNYRIIDLGAGFGFLSITLAK 63

Query: 230 HFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDI 287
            +  +V+A E  +  V+  R N+  N V + V++V    KE  + + R            
Sbjct: 64  KYGVKVVAFEYDERMVKLLRKNVKLNGVEHLVEVVEGDIKEIEKHLSR------------ 111

Query: 288 HSYRFKTIFVDPP 300
               F  +  +PP
Sbjct: 112 --GSFNLVVSNPP 122


>gi|15964555|ref|NP_384908.1| hypothetical protein SMc00902 [Sinorhizobium meliloti 1021]
 gi|307314745|ref|ZP_07594341.1| methyltransferase [Sinorhizobium meliloti BL225C]
 gi|307320039|ref|ZP_07599460.1| methyltransferase [Sinorhizobium meliloti AK83]
 gi|15073733|emb|CAC45374.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306894254|gb|EFN25019.1| methyltransferase [Sinorhizobium meliloti AK83]
 gi|306898969|gb|EFN29615.1| methyltransferase [Sinorhizobium meliloti BL225C]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 22/121 (18%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
            +L+L+ G G   L  L+R   +VL VE         R NI A  +    KI R  + + 
Sbjct: 48  RVLDLFAGTGAIGLEALSRGCRQVLFVEQGVEGRGLLRINIEALGLQGRAKIFRRDATDL 107

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQAYPHILYISCNPDSL 328
                 E               F  +F DPP   GL +  +        ++     P +L
Sbjct: 108 GPVGTMEP--------------FHLVFADPPYGKGLGERALSAAARGGWLV-----PGAL 148

Query: 329 C 329
            
Sbjct: 149 A 149


>gi|115358100|ref|YP_775238.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           ambifaria AMMD]
 gi|115283388|gb|ABI88904.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria AMMD]
          Length = 283

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--SVEAARYNIAAN 254
            ++E ++ A+    G +L+ + G+G  ++  AR     +  EI +   ++   R N  A 
Sbjct: 220 EIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYCAIAHERVNALAA 279

Query: 255 HV 256
             
Sbjct: 280 QA 281


>gi|134293157|ref|YP_001116893.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           vietnamiensis G4]
 gi|134136314|gb|ABO57428.1| DNA methylase N-4/N-6 domain protein [Burkholderia vietnamiensis
           G4]
          Length = 283

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--SVEAARYNIAAN 254
            ++E ++ A+    G +L+ + G+G  ++  AR     +  EI +   ++   R N  A 
Sbjct: 220 EIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYCAIAHERVNALAA 279

Query: 255 HV 256
             
Sbjct: 280 QA 281


>gi|325968329|ref|YP_004244521.1| dimethyladenosine transferase [Vulcanisaeta moutnovskia 768-28]
 gi|323707532|gb|ADY01019.1| dimethyladenosine transferase [Vulcanisaeta moutnovskia 768-28]
          Length = 276

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 20/116 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           M+   + +   +  ++LE+  G G  +  LA+   +V+ VEI    V  A      N +N
Sbjct: 37  MVIRDIISHVPLNSNVLEIGTGIGILTYYLAKVTSQVITVEIDGRLVRIAER--VLNQLN 94

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           N+ I++ ++ E                  I   +   I  + P S      + +++
Sbjct: 95  NISIIQGNALE------------------IPWPQVDIIVSNVPYSITSPLIIRIIR 132


>gi|303245831|ref|ZP_07332113.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
 gi|302492614|gb|EFL52482.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
          Length = 451

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 51/163 (31%), Gaps = 17/163 (10%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A     + +  L         + +   G G  +L+LA    +V+A ++    +       
Sbjct: 264 AAAQRILYDLRLDDWPEP---IFDACAGRGGKTLLLAEAGKKVIAGDMHAGRLSGLGREA 320

Query: 252 AANHVNNVKIVRMSSKEFTQAMRR------------EREFNRLKDIDIHSYRFKTIFVDP 299
           A   V+ + ++R S+     A  R                 R  D            +  
Sbjct: 321 ARLGVSPLGVLRGSATRLPLAPGRIGTILLDAPCSGLGVLARRPDSKWRRRPEDVAGLTR 380

Query: 300 PRSGLDDATVGMVQAYPHILYISC--NPDSLCRDLSILSTTHT 340
            +  + +A    +     I+Y++C  +P     ++  L   H 
Sbjct: 381 LQRAMLEAAYAALAPGGRIVYVTCTAHPAENEGNIDRLGARHH 423


>gi|255320668|ref|ZP_05361845.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262380699|ref|ZP_06073852.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           radioresistens SH164]
 gi|255302284|gb|EET81524.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           radioresistens SK82]
 gi|262297647|gb|EEY85563.1| 3-demethylubiquinone-9 3-O-methyltransferase [Acinetobacter
           radioresistens SH164]
          Length = 239

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARY 249
             IN   L WV   + G+ G  +L++ CG G  +  +AR     VL V++ +  +   R 
Sbjct: 32  HQINPLRLNWVDELSGGLAGKKVLDVGCGGGILTESMARRGAAEVLGVDMGEAPLAVGRL 91

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +    +V N++  ++  ++  +    + +     ++  H     +I 
Sbjct: 92  HAQQENVQNIEYRQIPVEQLAEEQADQYDIVTCMEMLEHVPDPASII 138


>gi|228955576|ref|ZP_04117578.1| Protein hemK [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|229181576|ref|ZP_04308902.1| Protein hemK [Bacillus cereus 172560W]
 gi|229193580|ref|ZP_04320524.1| Protein hemK [Bacillus cereus ATCC 10876]
 gi|228589885|gb|EEK47760.1| Protein hemK [Bacillus cereus ATCC 10876]
 gi|228601944|gb|EEK59439.1| Protein hemK [Bacillus cereus 172560W]
 gi|228804104|gb|EEM50721.1| Protein hemK [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 283

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA   +   V  V+IA+ S+E A+ N  A  
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENENLHVYTVDIAQESIEVAKENAKALG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFHKTGQKLDVVVSNPP 190


>gi|224372200|ref|YP_002606572.1| ribosomal protein L11 methyltransferase [Nautilia profundicola AmH]
 gi|223589094|gb|ACM92830.1| ribosomal protein L11 methyltransferase [Nautilia profundicola AmH]
          Length = 274

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 29/66 (43%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             +         LL++ CG+G   +V ++   +V A +    +V++A+ N   N+     
Sbjct: 136 KAIKKYVNENDTLLDVGCGSGILGIVASKLGAKVDACDTDSIAVDSAKENFELNNATYEN 195

Query: 261 IVRMSS 266
           I   S+
Sbjct: 196 IWHGSA 201


>gi|91785249|ref|YP_560455.1| ribosomal protein L11 methyltransferase [Burkholderia xenovorans
           LB400]
 gi|123358450|sp|Q13U36|PRMA_BURXL RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|91689203|gb|ABE32403.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia xenovorans LB400]
          Length = 300

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + +  Q  +L+  CG+G  ++ LA+      V  ++I   +VE+AR+N   N  
Sbjct: 156 MEWLEQSVQPGQS-VLDYGCGSGILAI-LAKKCGADPVYGIDIDPQAVESARHNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|323492606|ref|ZP_08097750.1| ribosomal RNA large subunit methyltransferase I [Vibrio
           brasiliensis LMG 20546]
 gi|323312981|gb|EGA66101.1| ribosomal RNA large subunit methyltransferase I [Vibrio
           brasiliensis LMG 20546]
          Length = 397

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 210 QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             ++L  +   G F L  L     RV+  ++++P+++ A+YN   N             +
Sbjct: 220 DKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKYNAELNE--------FDISK 271

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                     F  L++      +F  + +DPP+ 
Sbjct: 272 KRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKF 305


>gi|317494118|ref|ZP_07952534.1| methyltransferase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917891|gb|EFV39234.1| methyltransferase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 273

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           ++++ +          LL++ CG G+  L +A   + V  ++ +K  ++ A     A  +
Sbjct: 47  YLVQLIAKMDFSNAKTLLDVGCGPGSVCLNVADKLEHVYGIDYSKGMLDVAEKRARAMQL 106

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
            NV + R +          E  ++ L   DI      T+  D  R+
Sbjct: 107 ENVTLTRRA---------WEESWDDLPQCDIAVASRSTLVGDLRRA 143


>gi|312127403|ref|YP_003992277.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777422|gb|ADQ06908.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 304

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN 257
            +      + D+L++  G+G  ++  A+ F   RVLAV+I + +V+ A  N   N V 
Sbjct: 161 AIQKYVKPEMDVLDVGTGSGILAIA-AKKFLAKRVLAVDIDEVAVKVAEENARLNGVE 217


>gi|293194295|ref|ZP_06609981.1| transferase [Actinomyces odontolyticus F0309]
 gi|292819742|gb|EFF78756.1| transferase [Actinomyces odontolyticus F0309]
          Length = 563

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 21/119 (17%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           G  + +LE  +          L++ CG G  +L LA H DRV+A +++  +    ++N A
Sbjct: 205 GATLTLLEMTVREQVDSA---LDVGCGCGIQALYLATHADRVVATDLSSRACALTQFNAA 261

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            N                +A+   RE +  +   +    F  I  +PP     D+  G 
Sbjct: 262 LN----------------EAVIDVREGSLFE--PVEGETFDLIVTNPPFVITPDSVRGA 302


>gi|229489932|ref|ZP_04383785.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Rhodococcus erythropolis SK121]
 gi|229323033|gb|EEN88801.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Rhodococcus erythropolis SK121]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 15/111 (13%)

Query: 195 NVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARY 249
              ++ W L+  +G       +L+L  G+G  +L +A  R    V AVE    ++  AR 
Sbjct: 98  TELLMGWALSFLEGCGSKPPVVLDLCTGSGVLALSIAEARPDAVVHAVEKEPAALVWARR 157

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N A         + +   + T       + N L  ++        +  +PP
Sbjct: 158 NAADREAAGDTPIHLHQGDVT-------DRNLLPGLE---GGVDLVVSNPP 198


>gi|256379963|ref|YP_003103623.1| methyltransferase [Actinosynnema mirum DSM 43827]
 gi|255924266|gb|ACU39777.1| methyltransferase [Actinosynnema mirum DSM 43827]
          Length = 188

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+LY G+G      L+R       VE  + + +  R N A+  +    ++   ++  
Sbjct: 45  AHVLDLYAGSGALGFEALSRGAATATLVESDRRAADVLRANAASLRLPGATVLHRPAEVV 104

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
             A                      +  DPP +  D+    ++ 
Sbjct: 105 VAAPPERP--------------CDLVLADPPYAVTDEQLNRVLA 134


>gi|125718569|ref|YP_001035702.1| hypothetical protein SSA_1769 [Streptococcus sanguinis SK36]
 gi|125498486|gb|ABN45152.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
          Length = 183

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDIVVDATMGNGHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +N +++    +   Q
Sbjct: 66  DNAQLILAGHETLDQ 80


>gi|20091365|ref|NP_617440.1| methyltransferase [Methanosarcina acetivorans C2A]
 gi|19916499|gb|AAM05920.1| methyltransferase [Methanosarcina acetivorans C2A]
          Length = 244

 Score = 45.8 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AANHVN 257
           L+ ++         +L++ CG G  SL LA     V  ++I +  + AA+ +    N  +
Sbjct: 26  LDPIIYEYIKKDHLILDIGCGVGKVSLQLAFQGFYVEGIDINETGILAAQDSARKLNLAD 85

Query: 258 NVKIVRMSSKEF 269
                   +K+ 
Sbjct: 86  KAHFRVGDAKDL 97


>gi|330506715|ref|YP_004383143.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328927523|gb|AEB67325.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 281

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            V          +L++  G G  ++ +AR    V A++ +K  +     N+A   + N++
Sbjct: 54  QVATLGLLSHETVLDVGAGTGRLAIPMARIARSVTALDQSKGMLACLEENMAKEGIENIR 113

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            ++ S +E  +          L D+ + S     +        L ++   M       +Y
Sbjct: 114 TIQKSWEELAEGEI------ELHDVVLSSNSLGVL-------NLRESLAKMDSMAKRAVY 160

Query: 321 I 321
           I
Sbjct: 161 I 161


>gi|302842325|ref|XP_002952706.1| hypothetical protein VOLCADRAFT_93358 [Volvox carteri f.
           nagariensis]
 gi|300262050|gb|EFJ46259.1| hypothetical protein VOLCADRAFT_93358 [Volvox carteri f.
           nagariensis]
          Length = 330

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVN 257
           L  +  A +    ++ +  CG+G  +L   ++  R  +  +I   +V+AA+ N A N   
Sbjct: 230 LRRLGVAGRLRGAEVCDYGCGSGVLALAALKYGARMAVGTDIDSLAVKAAQRNAALNGFQ 289

Query: 258 NVKIVRMSSKEFTQAMRRE 276
               + +   E  +A R +
Sbjct: 290 PPVFIAVQVPEIQEAFRGQ 308


>gi|294676500|ref|YP_003577115.1| cytosine-N(4)-specific DNA-methyltransferase [Rhodobacter
           capsulatus SB 1003]
 gi|294475320|gb|ADE84708.1| site-specific DNA-methyltransferase (cytosine-N(4)-specific)
           [Rhodobacter capsulatus SB 1003]
          Length = 324

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 9/125 (7%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + E          G +L+ + G     +V AR     + +E+    V A +         
Sbjct: 91  LCEIAYRWFCPPGGTVLDPFAGGSVRGIVAARLGRPYVGIELRAEQVAANQAQADLAGDP 150

Query: 258 NVKIVRMSSKE---FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
               +   S++    T  +  +  F+     ++  Y         P           ++A
Sbjct: 151 APHWIAGDSRDLARLTAGIEADLVFSSPPYWNLERYSDD------PSDLSTMPLADFLKA 204

Query: 315 YPHIL 319
              I+
Sbjct: 205 QAEII 209


>gi|294086051|ref|YP_003552811.1| tRNA/rRNA cytosine-C5-methylase [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665626|gb|ADE40727.1| tRNA/rRNA cytosine-C5-methylase [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 448

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 16/138 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNN 258
            L         + ++  G G  SLV+A       RVLA++ +   +E +   +    ++N
Sbjct: 235 ALLCDARPGMQVADVCAGAGGKSLVMAARMQNKGRVLAIDSSAERLERSGERLRRAGIHN 294

Query: 259 VKIVRMSSKEFTQAMRRERE-------------FNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           V+   +  K  T+  R + +             + R  D                + GL 
Sbjct: 295 VERKAVDDKWGTRKWRAKFDRVVIDAPCSGSGTWRRQVDARWRLTPDILARYQATQQGLL 354

Query: 306 DATVGMVQAYPHILYISC 323
           +    MV     I+YI+C
Sbjct: 355 EKARAMVLPGGRIIYITC 372


>gi|261493622|ref|ZP_05990142.1| peptide chain release factor methyltransferase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261495460|ref|ZP_05991908.1| peptide chain release factor methyltransferase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261308965|gb|EEY10220.1| peptide chain release factor methyltransferase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261310804|gb|EEY11987.1| peptide chain release factor methyltransferase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 314

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 21/144 (14%)

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL   RL           + + L +RK    L   A     C    YVDER+ V  R+ I
Sbjct: 70  TLYSSRLTRVEKERIINLICERLGSRKPVAYLTNSAW---FCGGEYYVDERVIV-PRSPI 125

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAV 237
              I+  F                   K     +L++  G+G  ++  A  F    V AV
Sbjct: 126 GELIKKGF---------------KGIIKNEPHRILDMCTGSGCIAIACAERFPEAEVDAV 170

Query: 238 EIAKPSVEAARYNIAANHVNNVKI 261
           +++  +++ A+ NI  + V++   
Sbjct: 171 DLSLDALDVAQINIERHQVSHRVF 194


>gi|258567272|ref|XP_002584380.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237905826|gb|EEP80227.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 274

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 42/104 (40%), Gaps = 17/104 (16%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y  +  +   RT  +R + NS          +++  +          +L++ CG G+ ++
Sbjct: 11  YTTDHSSAVLRTHSWRTLANS--------AAYVIPHLRPGM-----TVLDVGCGPGSLTV 57

Query: 226 VLARHF----DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            LA+       +V+ ++     +++AR N     V NV+     
Sbjct: 58  DLAKRVAPEGGKVVGIDYVADPLDSARQNAVDQEVTNVEFKVGD 101


>gi|297584654|ref|YP_003700434.1| 50S ribosomal protein L11 methyltransferase [Bacillus
           selenitireducens MLS10]
 gi|297143111|gb|ADH99868.1| ribosomal protein L11 methyltransferase [Bacillus selenitireducens
           MLS10]
          Length = 316

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 173 VAGRTLIYRQIEN-SF---TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           V    L+       +F   T P   + + M+E  +         L+++ CG G  S+  A
Sbjct: 139 VHDDELVIELDPGMAFGTGTHPTTVMCIQMIEKYIRE----GDSLVDVGCGTGVLSIAAA 194

Query: 229 R-HFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           +    +V A+++ + +V +A  N   N V + V + + +  + T + +     N L ++ 
Sbjct: 195 KLGAAKVHALDLDEVAVHSAVINTKLNKVHDRVSVKQGNLLDDTPSEQDLIVANILAEVI 254

Query: 287 IHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           +           P    +    +G  QA 
Sbjct: 255 VTIPEEALKLTRPGGMFITSGIIGQKQAM 283


>gi|326446637|ref|ZP_08221371.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 224

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V        G  L+L CG G  ++ LA    RV  V+I+  ++  A  +        V 
Sbjct: 44  VREVEGLEPGTALDLGCGEGADAVWLAARGWRVTGVDISATALRRAALHAEEAGEAGVA 102


>gi|297190866|ref|ZP_06908264.1| UbiE family methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297150654|gb|EFH30713.1| UbiE family methyltransferase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 269

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            D+L++ CG G  +  LA      RV AV+ A+  +E AR ++    ++NV+      
Sbjct: 40  ADVLDVGCGPGTITADLAELVAPGRVTAVDAAEGVLEQARAHVEQRGLDNVRFAVADV 97


>gi|296160499|ref|ZP_06843315.1| ribosomal protein L11 methyltransferase [Burkholderia sp. Ch1-1]
 gi|295889248|gb|EFG69050.1| ribosomal protein L11 methyltransferase [Burkholderia sp. Ch1-1]
          Length = 300

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + +  Q  +L+  CG+G  ++ LA+      V  ++I   +VE+AR+N   N  
Sbjct: 156 MEWLEQSVQPGQS-VLDYGCGSGILAI-LAKKCGADPVYGIDIDPQAVESARHNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|295400674|ref|ZP_06810651.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977255|gb|EFG52856.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 288

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 30/148 (20%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGI------NVHMLEWVLAA-----TKGIQGDLL 214
           +V E + V   T   +     F   N  +         ++E VL        +    D++
Sbjct: 64  HVYEHVPVQHLTGFEQFYGRLFL-VNRDVLIPRPETEELVEGVLTRITQLFPRNTTVDVV 122

Query: 215 ELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++  G+G  ++ LA       + A++I+  +++ A  N      + V  +          
Sbjct: 123 DVGTGSGAIAITLALENPALSITAIDISAEALQMAEQNAKRLGAD-VAFICGDL------ 175

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP 300
                    L+ +   + +   +  +PP
Sbjct: 176 ---------LQPLIEANRKVDVVVSNPP 194


>gi|293603156|ref|ZP_06685589.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818387|gb|EFF77435.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
          Length = 226

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 190 PNAGINVHMLE------WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            N   N  ML                   +LE+  G+G  + +L     +V +VEI    
Sbjct: 65  VNTRQN--MLAPKVEARLAQELQLTKSDCVLEIGTGSGYQAALLGYLAQQVTSVEIDSRL 122

Query: 244 VEAARYNIAANHVNNVKIVRMSSK 267
           V  A+ N+  N+V NVK+    ++
Sbjct: 123 VTFAQQNLQMNNVTNVKVETGDAR 146


>gi|224070198|ref|XP_002335961.1| predicted protein [Populus trichocarpa]
 gi|222836641|gb|EEE75034.1| predicted protein [Populus trichocarpa]
          Length = 118

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQ 271
           L +++ G G  +L  A+    V A ++   +V+    N   N +  +++I  M  + F  
Sbjct: 23  LCDVFAGVGPIALSAAKIVKHVYANDLNPCAVQYMENNSVLNKLERHIEIFNMDGRRFID 82

Query: 272 AMRR 275
           AM  
Sbjct: 83  AMYA 86


>gi|218903707|ref|YP_002451541.1| methyltransferase [Bacillus cereus AH820]
 gi|218540213|gb|ACK92611.1| methyltransferase [Bacillus cereus AH820]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A+ N   + V NV+  
Sbjct: 39  VKERCELSDTLLDVGTGGGENVLNIASSAKLLIGIDNSNGMIETAQSNFKKSGVQNVEFF 98

Query: 263 RMSSKEFT 270
           +M S+  T
Sbjct: 99  QMDSEALT 106


>gi|148359877|ref|YP_001251084.1| protein methyltransferase HemK [Legionella pneumophila str. Corby]
 gi|296107927|ref|YP_003619628.1| HemK protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148281650|gb|ABQ55738.1| protein methyltransferase HemK [Legionella pneumophila str. Corby]
 gi|295649829|gb|ADG25676.1| HemK protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 287

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
              ++E  L      +   +LEL  G+G  +L LA+      + A + +K ++E ARYN 
Sbjct: 97  TERLVELALELIPDKENVSVLELGTGSGAIALALAKERPLWHIDACDFSKEALELARYNA 156

Query: 252 AANHVNNVKIVR 263
               +NN+    
Sbjct: 157 KTLGLNNINFCH 168


>gi|145350330|ref|XP_001419563.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579795|gb|ABO97856.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 278

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
            +++L+ G G ++L L ++    +V A E    S EA R+N+  N V    +++   ++ 
Sbjct: 124 TVVDLFAGIGYYTLQLLKNAGAAKVYACEWNPNSCEALRHNLRVNGVESRCEVLEGDNRR 183

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
                  +R    L      S+      + P
Sbjct: 184 TAPTGVADRVLLGLLPHAEMSWETAIKALKP 214


>gi|150400177|ref|YP_001323944.1| hypothetical protein Mevan_1437 [Methanococcus vannielii SB]
 gi|150012880|gb|ABR55332.1| protein of unknown function Met10 [Methanococcus vannielii SB]
          Length = 256

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +++++ G G F++ LA++     + A+E+   S      NI  N++ NV  +  +++
Sbjct: 99  TETVVDMFSGIGYFTIPLAKYSNPKLLYALELNPDSYNYLLENIKLNNLKNVIPILGNNQ 158

Query: 268 EFTQAMRRER 277
           +F      +R
Sbjct: 159 KFPLKNVADR 168


>gi|119475451|ref|ZP_01615804.1| hypothetical protein GP2143_16566 [marine gamma proteobacterium
           HTCC2143]
 gi|119451654|gb|EAW32887.1| hypothetical protein GP2143_16566 [marine gamma proteobacterium
           HTCC2143]
          Length = 400

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 106/328 (32%), Gaps = 77/328 (23%)

Query: 72  RIDYFMPGSLLINALMIEM--MATIRLEPLLRAKLFQIDYLTS----QSDQAIVTLIYHR 125
            I Y +  SLL++ L + +     +  +P  R      D+L      +    +V  I   
Sbjct: 75  DIRYPLDKSLLVHRLNVALSLREGMTDKPYYRLVYGDSDFLPGLVVDRFADVVVVQIATA 134

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTK-------ICLDRDYVDERLTVAGRTL 178
            ++   ++    L   L      ++   R   ++       +   +  V ER+ +    +
Sbjct: 135 GMEAVKQDIIDALVQVLKPEGILLKNDSRIRVSENLPEYVDVVYGQ--VPERVVMEENGV 192

Query: 179 IYRQIENS------FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHF 231
            +     S      F         H    +  A       +L+++   G + +  A    
Sbjct: 193 KFSVPVFSGQKTGWFY-------DHRANRLRLADYVRGKRVLDVFSYIGGWGVQAAVFGA 245

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           + V  ++ ++ +++    N   N V++ V  ++ S+            F+ +K +     
Sbjct: 246 ESVSCIDASEFALDGVDVNAELNQVSDKVGTIQGSA------------FDAMKMLINEGE 293

Query: 291 RFKTIFVDPPRSG---------------LDDATVGMVQAYPHILYISCNPD--------- 326
           R+  + VDPP                  +++  + ++     ++  SC+           
Sbjct: 294 RYDVVIVDPPAFIPKRKDVKSGEQAYRRINELAMRLLSKGGLLVSASCSMHLGRDRLTDI 353

Query: 327 ------SLCRDLSILSTTHTIERLALFD 348
                  L RDL IL           FD
Sbjct: 354 LRASARHLDRDLQILEQGG-----QCFD 376


>gi|94499041|ref|ZP_01305579.1| predicted SAM-dependent methyltransferase [Oceanobacter sp. RED65]
 gi|94428673|gb|EAT13645.1| predicted SAM-dependent methyltransferase [Oceanobacter sp. RED65]
          Length = 309

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 94/276 (34%), Gaps = 58/276 (21%)

Query: 31  PNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEM 90
           P  Q++ +    +     F ++H    L          E++ I+Y+ P           +
Sbjct: 6   PQEQVYSAFEQAFPSNEAFRVFHGRGGLVRGF------EQINIEYYAP-----------V 48

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
           +  +  +P+  A L            A+V  I  +    AW    I ++   H +   + 
Sbjct: 49  LWCMVYQPVNEAPLM-----------ALVESI--KANAAAWGIEHIYIQRR-HEKGDPV- 93

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML---EWVLAATK 207
                    I  D  Y+D+   V  + L Y        Q N G+ + M    +WV    +
Sbjct: 94  -------EVIMGDASYIDKEFVVTEQNLKYWVTLGRN-Q-NTGLFLDMAHGRKWVRENCQ 144

Query: 208 GIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
                +L L+    +  +  A     +V+ V++AK +++  + N A N  +         
Sbjct: 145 NKS--VLNLFAYTCSLGVAAAAGSARQVVNVDMAKAAIKRGQQNFALNEFSGA------- 195

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                A   +  F  +K I      +  +  DPP  
Sbjct: 196 ---GTAFMAQDVFKMIKKIGQKGP-YDLVICDPPSF 227


>gi|328554297|gb|AEB24789.1| hypothetical protein BAMTA208_13140 [Bacillus amyloliquefaciens
           TA208]
 gi|328912693|gb|AEB64289.1| hypothetical protein LL3_02757 [Bacillus amyloliquefaciens LL3]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 200 EWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           EW   + A    +G +L+L CG G  S+ LA     V  +++++  +  A+ 
Sbjct: 21  EWADWIEAALPEKGRVLDLACGTGEISVRLAEKGCEVTGIDLSEDMLSCAQQ 72


>gi|311277610|ref|YP_003939841.1| methyltransferase [Enterobacter cloacae SCF1]
 gi|308746805|gb|ADO46557.1| methyltransferase [Enterobacter cloacae SCF1]
          Length = 198

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+      +    L+ + G+G   L  L+R+      +E+ +   +  + N+A
Sbjct: 39  VRETLFNWLAPHM--VDARCLDCFAGSGALGLEALSRYAASATLLEMERNVAQQLQKNLA 96

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                N ++V  ++  F  A                      +F+DPP R GL D T+ +
Sbjct: 97  TLKAANARVVNANTLAFLAA---------------PGTPHDVVFIDPPFRKGLLDETLRL 141

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++Y+
Sbjct: 142 LESNGWLADDALIYV 156


>gi|242074768|ref|XP_002447320.1| hypothetical protein SORBIDRAFT_06g032890 [Sorghum bicolor]
 gi|241938503|gb|EES11648.1| hypothetical protein SORBIDRAFT_06g032890 [Sorghum bicolor]
          Length = 388

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
           +L++ CG G  S+  AR    RV A+E ++ +V+ AR  + AN++ + V ++    ++ 
Sbjct: 85  VLDVGCGTGILSVFCARAGAKRVYAIEASEIAVQ-AREIVKANNLTDQVVVIHGRVEDV 142


>gi|229823576|ref|ZP_04449645.1| hypothetical protein GCWU000282_00874 [Catonella morbi ATCC 51271]
 gi|229787020|gb|EEP23134.1| hypothetical protein GCWU000282_00874 [Catonella morbi ATCC 51271]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +L       +     +L+L  G G    +L A+    + A+E+ +  V+ A+ +   N++
Sbjct: 39  LLAHFAKVPRRQTARILDLCSGTGVIPFLLSAKTAGHIDAIELQEALVDMAQRSCQLNNL 98

Query: 257 -NNVKIVRMSSKEFTQA 272
            + +   +   K    A
Sbjct: 99  TDRLTFRQGDVKTMEAA 115


>gi|254360980|ref|ZP_04977125.1| peptide chain release factor methyltransferase [Mannheimia
           haemolytica PHL213]
 gi|153092466|gb|EDN73521.1| peptide chain release factor methyltransferase [Mannheimia
           haemolytica PHL213]
          Length = 314

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 21/144 (14%)

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           TL   RL           + + L +RK    L   A     C    YVDER+ V  R+ I
Sbjct: 70  TLYSSRLTRVEKERIINLICERLGSRKPVAYLTNSAW---FCGGEYYVDERVIV-PRSPI 125

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAV 237
              I+  F                   K     +L++  G+G  ++  A  F    V AV
Sbjct: 126 GELIKKGF---------------KGIIKNEPHRILDMCTGSGCIAIACAERFPEAEVDAV 170

Query: 238 EIAKPSVEAARYNIAANHVNNVKI 261
           +++  +++ A+ NI  + V++   
Sbjct: 171 DLSLDALDVAQINIERHQVSHRVF 194


>gi|134045414|ref|YP_001096900.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus
           maripaludis C5]
 gi|166225720|sp|A4FWV6|CBIT_METM5 RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|132663039|gb|ABO34685.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus maripaludis C5]
          Length = 181

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 31/67 (46%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG+G  S+ +A+    V +++ ++ +      N+    + N ++    +K+    
Sbjct: 36  VLDIGCGSGGMSVEIAKRSKFVYSIDNSEDAKNTTSINLKKFKIENCEVFHGDAKDLISK 95

Query: 273 MRREREF 279
               + F
Sbjct: 96  FDFNKVF 102


>gi|120608782|ref|YP_968460.1| precorrin-6Y C5,15-methyltransferase [Acidovorax citrulli AAC00-1]
 gi|120587246|gb|ABM30686.1| precorrin-6Y C5,15-methyltransferase (decarboxylating) [Acidovorax
           citrulli AAC00-1]
          Length = 447

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +          + ++  G+G+  L  AR      V A+E  +  VE AR N+    V+N 
Sbjct: 272 LARMQLRAASRVWDIGAGSGSVGLEAARLCPQGHVWAMEKNEGDVEIARRNVRDFGVSNH 331

Query: 260 KIVRMSSKEFTQAMRRER 277
            +V   + E   A     
Sbjct: 332 TLVHGKAPEGLDAWPDPD 349


>gi|15922284|ref|NP_377953.1| hypothetical protein ST1967 [Sulfolobus tokodaii str. 7]
 gi|15623073|dbj|BAB67062.1| 244aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 244

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV-----RM 264
             +L++  G G+ S+  +      V+AVEI K  +E  R N+  N +NNV +V      +
Sbjct: 104 KRVLDIGAGVGDSSIYFSTMGAKEVVAVEIDKKKIELMRENLRTNGINNVIVVDKGVGTV 163

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
            ++ F    R  +++    D  I     + +   P    + +  +     Y  ++
Sbjct: 164 DNENFISWERLIKDYGPFDDAKIDCDGCERLI-SPFIKEIPELLIEWDSDYKDVV 217


>gi|88811176|ref|ZP_01126432.1| UbiE/COQ5 methyltransferase [Nitrococcus mobilis Nb-231]
 gi|88791715|gb|EAR22826.1| UbiE/COQ5 methyltransferase [Nitrococcus mobilis Nb-231]
          Length = 234

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNN 258
            ++A        +L+L CG G  +  +A+ + R  V+ VE+ +  ++ AR       +NN
Sbjct: 40  RLVALMPHNPERILDLACGTGISTRTIAKRYPRCHVVGVELRQEYLDIAREKTERLGINN 99

Query: 259 VKIVRMSSKEFTQAMR 274
           ++ V   ++++   M 
Sbjct: 100 IEWVLSRAEDYYSKMP 115


>gi|119717593|ref|YP_924558.1| methyltransferase type 12 [Nocardioides sp. JS614]
 gi|119538254|gb|ABL82871.1| Methyltransferase type 12 [Nocardioides sp. JS614]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 18/159 (11%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +          LL+  CG G     LA+    V+ V+I    +EAAR          V 
Sbjct: 40  RLTDVLAPRGARLLDAGCGPGRHGGHLAQLGHDVVGVDIDPTLIEAARE-----DYPGVA 94

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
            +         A   E E     D  + +        +  R+ + +     ++    ++ 
Sbjct: 95  WLVGDLATLDLAAAGEAEPF---DGALIAGNVMDFVTEDHRAAVIERVAAHLKTDGFLV- 150

Query: 321 ISCN------PDSLCRDLSILSTTHTIE-RLALFDQFPY 352
           + C       P  L  D ++      +E R A +D  P+
Sbjct: 151 VGCRTGTGFTPADL--DATLPGAGLRLEQRFATWDLRPW 187


>gi|332970739|gb|EGK09719.1| methyltransferase domain protein [Desmospora sp. 8437]
          Length = 204

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 21/119 (17%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVL---ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           A    +G++L+L CG G   +     A H  RV  V++ + ++E AR N   N V+    
Sbjct: 55  AELPERGEILDLGCGYGPVGIACSVFAPHC-RVTMVDLNRRALELARRNAELNGVS---- 109

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
              S  E  ++        R         RF ++  +PP R+G         +AY  ++
Sbjct: 110 ---SHVEILESDGLSALGKR---------RFDSVLTNPPIRTGKKTVYRLFGEAYEQLV 156


>gi|332091385|gb|EGI96472.1| protein smtA [Shigella dysenteriae 155-74]
          Length = 230

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+       V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEEKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|309779561|ref|ZP_07674322.1| methyltransferase [Ralstonia sp. 5_7_47FAA]
 gi|308921802|gb|EFP67438.1| methyltransferase [Ralstonia sp. 5_7_47FAA]
          Length = 384

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 3/120 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANH 255
             +E V  A    +    ++  G G  + VLA+    RV+  +    ++  AR N+A   
Sbjct: 192 EYIELVANAPLPSKTLAFDIGTGTGVLAAVLAKRGVKRVIGTDQDPRALACARENLARLG 251

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           +   ++  + + +     R          +           V  P S +    +  + A+
Sbjct: 252 LQ-AQVDVVDA-DLFPEGRAPLIVCNPPWLPARPSSPIERAVYDPDSRMLRGFLEGLAAH 309


>gi|213408367|ref|XP_002174954.1| UbiE-like methyltransferase [Schizosaccharomyces japonicus yFS275]
 gi|212003001|gb|EEB08661.1| UbiE-like methyltransferase [Schizosaccharomyces japonicus yFS275]
          Length = 272

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            +L++ CG G  ++  AR     +V+ ++++K  +  A  N     + NV+     
Sbjct: 39  RILDIGCGPGTITIDFARMLPQAQVIGIDMSKDVINIAEENARRAKIKNVQFEVGD 94


>gi|168576250|ref|ZP_02722144.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus pneumoniae MLV-016]
 gi|183577963|gb|EDT98491.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus pneumoniae MLV-016]
          Length = 279

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 32/153 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+    L V  R LI R                ++E +L      
Sbjct: 62  QLAAHKPAQYIIGQADFYGMHLKVDERVLIPRPE-----------TEELVELILTENLET 110

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A ++++ +++ A  N       N++I    S 
Sbjct: 111 NLSVLDIGTGSGTIALALAKNRPDWSVTAADVSQEALDLASENAKN---QNLQIFFKKSD 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            FT+                 S ++  I  +PP
Sbjct: 168 CFTE----------------ISEKYDIIVSNPP 184


>gi|150008084|ref|YP_001302827.1| hypothetical protein BDI_1448 [Parabacteroides distasonis ATCC
           8503]
 gi|149936508|gb|ABR43205.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 395

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 41/156 (26%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             Q  + +L  G G  S   +R   +V  +E      EAA +N      +NV ++   S 
Sbjct: 85  DPQAHVCDLTGGLGIDSYFFSRKVQQVTYIERFPAYCEAAIHNFKVLEADNVTVLNGDST 144

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327
           E             L +ID         ++DP R G  +  V  +Q         C PD 
Sbjct: 145 EL------------LAEID----GIDVFYIDPARRGEGNKRVFALQD--------CEPD- 179

Query: 328 LCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLV 363
                        + +L     F +   +     L 
Sbjct: 180 -------------LTKLVPV-LFSHAPRV--IAKLS 199


>gi|119512759|ref|ZP_01631829.1| Mg-protoporphyrin IX methyl transferase [Nodularia spumigena
           CCY9414]
 gi|119462577|gb|EAW43544.1| Mg-protoporphyrin IX methyl transferase [Nodularia spumigena
           CCY9414]
          Length = 228

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 4/84 (4%)

Query: 191 NAGINV--HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           N        ++ W+       +  + +  CG G+ S+ LA    ++ A +I++  V  A+
Sbjct: 40  NGHQQTVDTVISWLKDDGNLPELSICDAGCGVGSLSIPLAADGAKIYASDISEKMVTEAK 99

Query: 249 YNIAA--NHVNNVKIVRMSSKEFT 270
               A   +V N        +  +
Sbjct: 100 DRALATLGNVENTTFAVQDLESLS 123


>gi|56421054|ref|YP_148372.1| hypothetical protein GK2519 [Geobacillus kaustophilus HTA426]
 gi|56380896|dbj|BAD76804.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +E   A      G  ++++ CG G  ++ LA+   +V  V++++  +  A+    A  V 
Sbjct: 26  VERAFAQYTKRPGRRVIDIGCGTGELAIRLAKAGWQVSGVDLSEHMLAVAQAKAEAEGVE 85

Query: 258 NVKIVRMSSK-----EFTQAMRREREFNRLKDIDIHSYRFKTI 295
                +  ++     +   A       N L D +     F  +
Sbjct: 86  VPFFEQNMAELDGFSDLDGAFLFCDALNYLTDEEDVKRTFAAV 128


>gi|33519809|ref|NP_878641.1| putative protoporphyrinogen oxidase [Candidatus Blochmannia
           floridanus]
 gi|33504154|emb|CAD83416.1| methylase of polypeptide chain release factors [Candidatus
           Blochmannia floridanus]
          Length = 281

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHF 231
             +L ++     F  P       ++E VL          +L+L  G G+ +L LA  R  
Sbjct: 78  FWSLSFKISPGVFI-PRTDTEC-LIEEVLNLIPDCNHLKVLDLGSGVGSIALALASERPT 135

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             +  ++  + +V  A  N  +    NV+ 
Sbjct: 136 WNITGIDQQQQAVILAIKNQKSYKFRNVEF 165


>gi|332289602|ref|YP_004420454.1| ribosomal protein L11 methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330432498|gb|AEC17557.1| ribosomal protein L11 methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 293

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW   +   +   +++  CG+G  ++  L       + ++I   +++A+R N   N V 
Sbjct: 149 LEW-FDSLDLLDKTVIDFGCGSGILAIAALKLGAKNAIGIDIDPQAIQASRENAKRNGVE 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|172038708|ref|YP_001805209.1| hypothetical protein cce_3795 [Cyanothece sp. ATCC 51142]
 gi|171700162|gb|ACB53143.1| hypothetical protein cce_3795 [Cyanothece sp. ATCC 51142]
          Length = 255

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNI 251
                +L W           LLEL    G  ++ +A+ +  RV+ +E    SV  AR NI
Sbjct: 30  AATEQLLTWA---NFQPGETLLELAASFGESAIEIAKRYKVRVVGIEKNPDSVAKARENI 86

Query: 252 AANHVNN-VKIVRMS 265
            A  ++N + I+   
Sbjct: 87  KAAGLSNQITIIEGD 101


>gi|149411218|ref|XP_001514237.1| PREDICTED: similar to hepatocellular carcinoma-associated antigen
           137 [Ornithorhynchus anatinus]
          Length = 845

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 18/100 (18%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    ++ AR N       + ++++         
Sbjct: 674 VVDAFCGVGGNAIQFALAGKRVIAIDIDPVKIDLARNNAQVYGVADRLELICGDFLLLAP 733

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            ++                    +F+ PP  G D AT  +
Sbjct: 734 NLKA-----------------DVVFLSPPWGGPDYATAEI 756


>gi|291283571|ref|YP_003500389.1| putative adenine-specific methylase [Escherichia coli O55:H7 str.
           CB9615]
 gi|13362684|dbj|BAB36637.1| putative adenine-specific methylase [Escherichia coli O157:H7 str.
           Sakai]
 gi|209764668|gb|ACI80646.1| putative adenine-specific methylase [Escherichia coli]
 gi|209764670|gb|ACI80647.1| putative adenine-specific methylase [Escherichia coli]
 gi|209764672|gb|ACI80648.1| putative adenine-specific methylase [Escherichia coli]
 gi|209764674|gb|ACI80649.1| putative adenine-specific methylase [Escherichia coli]
 gi|209764676|gb|ACI80650.1| putative adenine-specific methylase [Escherichia coli]
 gi|290763445|gb|ADD57406.1| Putative adenine-specific methylase [Escherichia coli O55:H7 str.
           CB9615]
          Length = 421

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|114319528|ref|YP_741211.1| SAM-dependent methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225922|gb|ABI55721.1| SAM-dependent methyltransferase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 403

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 23/130 (17%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQG--------DLLELYCGNGNFSLVLARHFD-RVLAVE 238
            Q           W        Q          +L+++   G + +  A      V  V+
Sbjct: 194 FQV-PATTGQKTGWYYDHRMNRQALRPWVPGRRVLDVFSYMGAWGVQAAVAGAAEVFCVD 252

Query: 239 IAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
            ++ +++    N A N V + V  V+  + +    +R+  E            RF  + V
Sbjct: 253 SSEQALDGVAENAALNGVSDQVAGVQGDAFDALAELRQANE------------RFDVVVV 300

Query: 298 DPPRSGLDDA 307
           DPP       
Sbjct: 301 DPPAFIKRKK 310


>gi|325290540|ref|YP_004266721.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965941|gb|ADY56720.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 312

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 28/221 (12%)

Query: 74  DYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRE 133
           D    G  LI     E    + +   +R  L ++  L     + I+      + +  W +
Sbjct: 54  DMEPTGCCLIKGYFPEDERILDILSGIREGLARLKVL---FPEWILRSETGTVRERDWAD 110

Query: 134 CAIRLRDALH-ARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN-SF---T 188
              +    +   R++ I+                  E+  V    ++ R     +F   T
Sbjct: 111 EWKKFFKPVRIGRRWLIEPTW---------------EKAEVQENDILIRIDPGMAFGTGT 155

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            P   + +  +E ++         + ++  G+G  ++  A+   +V A +I   +V  A+
Sbjct: 156 HPTTSLCLEAIEDLVKPGM----TVFDIGTGSGILAVAAAKLGGKVQAGDIDALAVRIAK 211

Query: 249 YNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
            N   N V   V +   +  +  +        N + D+ I 
Sbjct: 212 ENAELNQVEGKVTVEAGNLGDIFKGRADVVIANIVADVIIE 252


>gi|308190291|ref|YP_003923222.1| protoporphyrinogen oxidase [Mycoplasma fermentans JER]
 gi|307625033|gb|ADN69338.1| protoporphyrinogen oxidase [Mycoplasma fermentans JER]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 22/136 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIA 252
              M++  L        ++L+L CG+G   L + +     +V  V+I+  +++    N  
Sbjct: 61  TEEMVDIYLKKFAAENQEVLDLCCGSGFIGLAIKKNLRSAKVTLVDISDEAIKQTIENSI 120

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--G 310
            N   N  +    S  FT                    RF  I  +PP    +D ++   
Sbjct: 121 VNFGFNHDLKIYQSDLFTNV----------------KGRFDVIISNPPYLNCNDKSLDWK 164

Query: 311 MVQAYPHILYISCNPD 326
            +   P I    C P+
Sbjct: 165 ALSFEPKIAL--CAPE 178


>gi|284045152|ref|YP_003395492.1| methyltransferase [Conexibacter woesei DSM 14684]
 gi|283949373|gb|ADB52117.1| methyltransferase [Conexibacter woesei DSM 14684]
          Length = 180

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 18/116 (15%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L+ G+G   L  L+R    V  V+ A  +V A   N+ A  V   ++         
Sbjct: 43  RVLDLFAGSGALGLEALSRGAAHVTFVDDANAAVRAIEANLEALGVPRERV--------- 93

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPR-------SGLDDATVGMVQAYPHIL 319
            A++R      ++      + +  + +DPP          L  A   ++ A   I+
Sbjct: 94  -AVQRRDARAVVRAARAARHEYDLVLLDPPYRLAPELGRELSPALAELIAADGRIV 148


>gi|258652313|ref|YP_003201469.1| modification methylase, HemK family [Nakamurella multipartita DSM
           44233]
 gi|258555538|gb|ACV78480.1| modification methylase, HemK family [Nakamurella multipartita DSM
           44233]
          Length = 298

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              +L W L A   ++   +++L  G+G  +L +A  R   RV+ VE +  ++  AR N+
Sbjct: 98  TESLLVWALHAIAAVERPVVVDLCTGSGVLALAIAAERPDARVIGVERSSAALAWARRNV 157

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                   K+           +R    F+    +D+       +  +PP
Sbjct: 158 TNAGAGRTKV----------ELRGGDIFDERLLVDLEGL-ADLVTANPP 195


>gi|218530637|ref|YP_002421453.1| methyltransferase small [Methylobacterium chloromethanicum CM4]
 gi|218522940|gb|ACK83525.1| methyltransferase small [Methylobacterium chloromethanicum CM4]
          Length = 341

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
            +  H+ E   A     +    ++ CG+G   +++A+      V+ V+I   ++ AAR N
Sbjct: 143 AVLAHLKERARAGHPAPR-RAADIGCGSGAAGILVAKRLPEAEVVLVDINPAALRAARIN 201

Query: 251 IAANHVNNVKIVRMSS 266
                V+NV+ V    
Sbjct: 202 ARLAVVDNVRPVHSDM 217


>gi|159489524|ref|XP_001702747.1| hexaprenyldihydroxybenzoate methyltransferase [Chlamydomonas
           reinhardtii]
 gi|158280769|gb|EDP06526.1| hexaprenyldihydroxybenzoate methyltransferase [Chlamydomonas
           reinhardtii]
          Length = 263

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA--NHVNNVK 260
           +   +     +L++ CG G  S  LAR   +V  +++ + +VEAAR + AA       V+
Sbjct: 1   MPHMRPTGLRVLDVGCGGGILSESLARLGAQVTGIDVTRENVEAARLHAAADPAVAERVR 60

Query: 261 IVRMSSKEF 269
              +S ++ 
Sbjct: 61  YEVISVEDL 69


>gi|126663636|ref|ZP_01734632.1| hypothetical protein FBBAL38_11219 [Flavobacteria bacterium BAL38]
 gi|126624219|gb|EAZ94911.1| hypothetical protein FBBAL38_11219 [Flavobacteria bacterium BAL38]
          Length = 398

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++   G G      ++ F  V+  E+     +  ++N    +  N+K  +  S EF + 
Sbjct: 93  IIDCTGGFGIDDYYFSKQFKTVIHCELNSDLSKIVKHNFKVLNATNIKCYQGDSTEFLKN 152

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY-PHIL 319
              E          + + +F  I++DP R       V M+    P+++
Sbjct: 153 YHAE---------PVETQKFDCIYIDPSRRNDTKGKVFMLADCLPNVV 191


>gi|119872260|ref|YP_930267.1| methyltransferase small [Pyrobaculum islandicum DSM 4184]
 gi|119673668|gb|ABL87924.1| methyltransferase [Pyrobaculum islandicum DSM 4184]
          Length = 202

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNF-SLVLARHFDRVLAVEIAKPSVEAARYN 250
               +       A  +G+  D+L+L CG G F     A    RVL V++   ++  A+  
Sbjct: 31  TDAAIVATAVWDAYMRGLLVDVLDLGCGTGRFALAAAAMGARRVLCVDVDVEALAVAKRA 90

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             A+ ++ V  +  +        +    F                F+    +      V 
Sbjct: 91  AEAHGLDAVDFLAAAVPSLPIVKKFRVAFQNPPFGIWSGRGTDIAFLH--AAVEHAEVVY 148

Query: 311 MVQAYPHILYISCNPDSLCRDLSILST 337
            +   P + Y+      L R L +L  
Sbjct: 149 TIHKLPTLAYVREAAARLGRRLEVLER 175


>gi|30248972|ref|NP_841042.1| N6-adenine-specific methylase [Nitrosomonas europaea ATCC 19718]
 gi|30138589|emb|CAD84880.1| possible N6-adenine-specific methylase [Nitrosomonas europaea ATCC
           19718]
          Length = 183

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 20/113 (17%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G       +R   +V  +E    +V     +I     + VK+  + ++ F  A
Sbjct: 52  LDLFAGSGALGFEAASRGAKQVTMIEQNMKAVRNLHCSIEKLGASQVKLEHVDARMFLTA 111

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPH---ILYI 321
                          +S R+  IFVDPP +SGL    + ++ A      ++Y+
Sbjct: 112 ---------------NSERYDVIFVDPPFKSGLLAEVLPLLPAKLEEEGVVYV 149


>gi|84496605|ref|ZP_00995459.1| methylase involved in ubiquinone/menaquinonebiosynthesis-like
           protein [Janibacter sp. HTCC2649]
 gi|84383373|gb|EAP99254.1| methylase involved in ubiquinone/menaquinonebiosynthesis-like
           protein [Janibacter sp. HTCC2649]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L       G  L+  CG G  +  LA HFDRV  V+IA   +E AR          V+  
Sbjct: 56  LGHRPQQHGRALDFGCGAGRLTRALAAHFDRVDGVDIAASMIELARE--KNTGHERVQFH 113

Query: 263 RMSSKEFT 270
              + + +
Sbjct: 114 LNEAADLS 121


>gi|315653117|ref|ZP_07906042.1| methyltransferase domain protein [Lactobacillus iners ATCC 55195]
 gi|315489482|gb|EFU79119.1| methyltransferase domain protein [Lactobacillus iners ATCC 55195]
          Length = 204

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I G++L++  G G   L  A+     RV  ++I + ++  A+ N   N ++NV I    
Sbjct: 60  EISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDINERALALAKRNAQLNEIDNVNIFSSD 119

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                        +  L + +    +F  I  +PP          ++Q    
Sbjct: 120 C------------YRNLDEQE----QFGLILTNPPIRAGKQVVDDILQNAKK 155


>gi|294632820|ref|ZP_06711379.1| methyltransferase small domain-containing protein [Streptomyces sp.
           e14]
 gi|292830601|gb|EFF88951.1| methyltransferase small domain-containing protein [Streptomyces sp.
           e14]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V        G +L++ CG G  ++ LAR    V A++++  +++ A  +     V+   +
Sbjct: 70  VAEVASLTPGRVLDVGCGEGADAVWLARRGWEVTALDVSGVALDRAAGHARDAGVSVRWV 129

Query: 262 VRMSSKEFTQA 272
                +    A
Sbjct: 130 HAGLVEAALPA 140


>gi|290957364|ref|YP_003488546.1| methylase [Streptomyces scabiei 87.22]
 gi|260646890|emb|CBG69987.1| putative methylase [Streptomyces scabiei 87.22]
          Length = 281

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARH 230
             R L  +     F          ++ W + A +    ++  +++L  G+G  +L LA+ 
Sbjct: 75  YFRYLELQVGPGVF--VPRPETESVVGWAIDAVRAMDVVEPLIVDLCTGSGAIALALAQE 132

Query: 231 F--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               RV AVE+++ ++   R N+A + V+  +   + +
Sbjct: 133 VPRSRVHAVELSEDALTWTRKNMAGSRVDLRQGNALDA 170


>gi|253577952|ref|ZP_04855224.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850270|gb|EES78228.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 837

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           ++ +    L+ +       +  +L++ CG G FS++LA+    V  +++    +  +R  
Sbjct: 621 HSDMADKWLKEIGTFLPDGKLRILDVGCGAGFFSILLAKLGHEVTGIDLTPDMIIHSREL 680

Query: 251 IAANHVNNVKIVRMSSK 267
               + +      M ++
Sbjct: 681 AKEENAS-CTFEVMDAE 696



 Score = 39.2 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++  G G F ++LA    +V AV+  +  ++ A+ N   N    +   +M ++  
Sbjct: 52  KILDIGTGPGFFPVILAEAGYKVTAVDYTQEMLDTAKRNAG-NLCERISFYKMDAQNL 108


>gi|163788936|ref|ZP_02183381.1| putative sun protein [Flavobacteriales bacterium ALC-1]
 gi|159876173|gb|EDP70232.1| putative sun protein [Flavobacteriales bacterium ALC-1]
          Length = 403

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 95/248 (38%), Gaps = 23/248 (9%)

Query: 95  RLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR-DALHARKYQIQLIG 153
            L  + + +    D++     + +    + + +     +  + LR + L   K  +QL  
Sbjct: 111 ELSKIRKYRESIPDWIDELGVKELGEAEWTKEIAKQNEQADVILRVNTLKTTKNDLQLKL 170

Query: 154 RAN--KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           ++   +T++  +  Y   +LT           +N + +     +  ++   L    G++ 
Sbjct: 171 QSEDIETEVLPNHPYAL-KLTERANVFKTEAFKNGWFEV-QDASSQLVADFLDVKPGMK- 227

Query: 212 DLLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            ++++  G G  +L LA    +  +V+A++I +  ++  +     N V+N+++  + S +
Sbjct: 228 -VVDVCAGAGGKTLHLAALMENKGQVIAMDIYESKLKKLKIRARRNGVHNIEMKVIDSTK 286

Query: 269 FTQAMRRERE-------------FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             + +  + +               R  D            +   +  + +    MV++ 
Sbjct: 287 PIKKLHGKADRLLIDAPCSGLGVLRRNPDAKWKLQPEFVQSIKQTQIEVLEQYSKMVKSG 346

Query: 316 PHILYISC 323
             ++Y +C
Sbjct: 347 GKMVYATC 354


>gi|153007051|ref|YP_001381376.1| HemK family modification methylase [Anaeromyxobacter sp. Fw109-5]
 gi|152030624|gb|ABS28392.1| modification methylase, HemK family [Anaeromyxobacter sp. Fw109-5]
          Length = 285

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 21/129 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              +L     A     G LL+L  G+G   + +A  R   RVLA + ++ ++  AR N +
Sbjct: 98  ETELLVEAALAELPRGGRLLDLCTGSGAIGVTVALERPDARVLATDASEDALAVARENAS 157

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATVG 310
                                  E     L        RF+ I  +PP   +G       
Sbjct: 158 RLGA-----------------VVELAHGDLWAAVHGDARFEVIASNPPYVPAGELAGLAP 200

Query: 311 MVQAYPHIL 319
            V+  P I 
Sbjct: 201 EVRREPCIA 209


>gi|146311097|ref|YP_001176171.1| putative metallothionein SmtA [Enterobacter sp. 638]
 gi|145317973|gb|ABP60120.1| Methyltransferase type 11 [Enterobacter sp. 638]
          Length = 258

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ +LA     +  +L+   G G  ++++A     V   +++   V  A+       V +
Sbjct: 34  LDTLLATYGSRKLRVLDAGGGEGQTAILMAERGHHVTFCDLSAEMVARAKRAAHEKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           N+  +  ++++  Q +  + +      +       + +   
Sbjct: 94  NMHFIHCAAQDIAQHLETQVDLILFHAVLEWVAEPQAMLNT 134


>gi|146309213|ref|YP_001189678.1| SAM-dependent methyltransferase [Pseudomonas mendocina ymp]
 gi|145577414|gb|ABP86946.1| SAM-dependent methyltransferase [Pseudomonas mendocina ymp]
          Length = 399

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 27/139 (19%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A       +L+L+   G + +   A     V  V+ +  +++    N   N     
Sbjct: 213 RARLAPYVKGKRVLDLFSYIGGWGVQAAAFGASEVFCVDASGFALDGVERNATLNGF--A 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------------L 304
           + +     +   A+R  +             RF  +  DPP                  L
Sbjct: 271 EKITCVEGDVFAALRELKSAEE---------RFDVVIADPPAFIKRKKDIKNGEAAYRRL 321

Query: 305 DDATVGMVQAYPHILYISC 323
           ++  + ++     ++  SC
Sbjct: 322 NEIAMRLLNKDGILVSASC 340


>gi|85860611|ref|YP_462813.1| methyltransferase [Syntrophus aciditrophicus SB]
 gi|85723702|gb|ABC78645.1| methyltransferase [Syntrophus aciditrophicus SB]
          Length = 260

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +L++ CG G  ++ LA     + AV+ +   +E       A  + NVK ++      
Sbjct: 44  SWTVLDMACGGGTIAIPLANRVKFITAVDFSMRMLEIVEQRCLAGKITNVKTLQG----- 98

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                  R  +   D+ I  +               D+   + +A    +YIS
Sbjct: 99  -------RWEDDWDDLGIGVHDVAIASRSLLSETAMDSIAKLNRAATKAVYIS 144


>gi|297618445|ref|YP_003703604.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297146282|gb|ADI03039.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 296

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLL--ELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
              M+E  +A  +G+ G L   ++  G G  ++ LA +    R++A++I+  +VE AR N
Sbjct: 101 TEVMVEKAIAIGRGMGGSLWVADVGTGCGAIAIALAVYLPNARIVAIDISSAAVELARKN 160

Query: 251 IAANHV-NNVKIVRMS 265
                V + +  +   
Sbjct: 161 ARRYQVHDRIDFMVGD 176


>gi|126463164|ref|YP_001044278.1| methyltransferase small [Rhodobacter sphaeroides ATCC 17029]
 gi|126104828|gb|ABN77506.1| methyltransferase small [Rhodobacter sphaeroides ATCC 17029]
          Length = 253

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
             A        +LEL CG G  SL LA      R+  +E+       AR N A N V  +
Sbjct: 36  AAAVPASAGQSVLELGCGAGVASLCLAARVPGLRLAGLELQPAYAALARENAALNGVA-L 94

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++V         A+R+  + + + +   +     T   DP R 
Sbjct: 95  EVVEGDLSAMPAALRQSFD-HVIANPPYYPAGGGTGAADPGRE 136


>gi|150400076|ref|YP_001323843.1| hypothetical protein Mevan_1334 [Methanococcus vannielii SB]
 gi|150012779|gb|ABR55231.1| protein of unknown function Met10 [Methanococcus vannielii SB]
          Length = 344

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 45/110 (40%), Gaps = 21/110 (19%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++++CG G +S+   +  +++ +++I    +   + NI  N++ N              
Sbjct: 201 VVDMFCGVGPYSIAC-KSAEKIYSIDINPDGIALLKENIKLNNLEN-------------- 245

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYPHILY 320
               +    L D+   + +   + ++ P+   +  D  + +V     I Y
Sbjct: 246 ----KIIPILDDVRNVNVKGSRVIMNLPKYAHEFVDKALEIVADDGIIHY 291


>gi|156743543|ref|YP_001433672.1| type 11 methyltransferase [Roseiflexus castenholzii DSM 13941]
 gi|156234871|gb|ABU59654.1| Methyltransferase type 11 [Roseiflexus castenholzii DSM 13941]
          Length = 262

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEF 269
           G +L++ CG+G   + LA+   RV  ++ +   +E AR  +AA  V   + +     +  
Sbjct: 43  GRVLDVMCGSGRLLVPLAQAGMRVTGIDASAAMIERARMRVAATGVAPRIALYHGDVRSA 102

Query: 270 TQ 271
             
Sbjct: 103 VP 104


>gi|58040812|ref|YP_192776.1| ribosomal protein L11 methyltransferase [Gluconobacter oxydans
           621H]
 gi|58003226|gb|AAW62120.1| Ribosomal protein L11 methyltransferase [Gluconobacter oxydans
           621H]
          Length = 301

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVN 257
           L  +          +L++ CG+G  ++  A+   R VLAV+I   SV  A+ N   N   
Sbjct: 149 LRALEMVAYRKPQRILDMGCGSGILAMAAAKLLHRPVLAVDIEPWSVRTAKLNARLNGQG 208

Query: 258 NVKIVRMSSKEFTQAMRREREFN 280
           N+   R  +   T+A+R +  ++
Sbjct: 209 NLLDCRFGNGWQTEAVRAKAPYD 231


>gi|73540424|ref|YP_294944.1| glycosyl transferase family protein [Ralstonia eutropha JMP134]
 gi|72117837|gb|AAZ60100.1| Glycosyl transferase, family 2:Glycosyl transferase, group 1
           [Ralstonia eutropha JMP134]
          Length = 1106

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +          D+L++ CG G  S +LA     V+ V+IA+ +V  AR  +  +   N++
Sbjct: 4   YAWCLQFVADRDVLDIACGEGYGSALLATRARSVIGVDIAEAAVNHAR--LRYHDRANLR 61

Query: 261 IVRMSSKEF 269
               ++   
Sbjct: 62  YETGNAAAI 70


>gi|315092953|gb|EFT64929.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL060PA1]
          Length = 291

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 79  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGACPSVIDLCTGTGAIALAV 135

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+     + V+++   +       RR          
Sbjct: 136 ASEVPGSRVSAVEVDDAALMWTRRNL---GDSGVEVLTGDALRVPDDGRR---------- 182

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 183 ------FDIVVTNPP 191


>gi|326772535|ref|ZP_08231819.1| transferase [Actinomyces viscosus C505]
 gi|326637167|gb|EGE38069.1| transferase [Actinomyces viscosus C505]
          Length = 559

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 13/113 (11%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G  L+L CG G  +L L RH + V+A +I+  ++    +N A   V+ V     ++    
Sbjct: 184 GTALDLGCGCGIQTLYLLRHAEHVVATDISARALAFTAFNAALAGVS-VTGAPGAAPGAD 242

Query: 271 QAMRREREFNRLKDI------------DIHSYRFKTIFVDPPRSGLDDATVGM 311
            A   + E     D              +   RF  I  +PP      A    
Sbjct: 243 AASESDVEPGPASDPGRLELLRGSLLEPVAGRRFDLIASNPPFVLTPPAVREA 295


>gi|116072040|ref|ZP_01469308.1| Mg-protoporphyrin IX methyl transferase [Synechococcus sp. BL107]
 gi|116065663|gb|EAU71421.1| Mg-protoporphyrin IX methyl transferase [Synechococcus sp. BL107]
          Length = 237

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 17/134 (12%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
            +L W+  + +       +  CG G+ SL LA      + A +I++   + A      N 
Sbjct: 56  EVLAWIEKSGELNNASFCDAGCGVGSLSLPLAAMGAGSIQASDISEAMAKEADRRARENG 115

Query: 256 VNNVK--IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           ++  K        +  + +               H+     +F+  P+   ++    +  
Sbjct: 116 LDMAKLNFFASDLESLSGSF--------------HTVCCLDVFIHYPQKPAEEMVKHLCG 161

Query: 314 AYPHILYISCNPDS 327
                L +S  P +
Sbjct: 162 LTEQRLIVSFAPYT 175


>gi|91773405|ref|YP_566097.1| methyltransferase [Methanococcoides burtonii DSM 6242]
 gi|91712420|gb|ABE52347.1| RNA methyltransferase [Methanococcoides burtonii DSM 6242]
          Length = 203

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 26/141 (18%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIA 252
           +   ML +       ++G + +L CG G  ++  A    ++V+  +    +++ AR N  
Sbjct: 32  LAAEMLHFAF-MKGDLEGTVYDLGCGTGMLAIGAAMLGAEKVVGFDSDSGALDIARENAE 90

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR----SGLDDAT 308
              V+ V+                      KDI        T+ ++PP      G D   
Sbjct: 91  IFGVD-VEFEC-------------------KDIRQVRGHADTVVMNPPFGAQVKGSDRPF 130

Query: 309 VGMVQAYPHILYISCNPDSLC 329
           +        + Y   N  SL 
Sbjct: 131 LKTAMRVADVTYSIHNSGSLA 151


>gi|15802877|ref|NP_288904.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 EDL933]
 gi|12516692|gb|AAG57459.1|AE005464_10 putative adenine-specific methylase [Escherichia coli O157:H7 str.
           EDL933]
          Length = 421

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|47568701|ref|ZP_00239397.1| methyltransferase [Bacillus cereus G9241]
 gi|47554595|gb|EAL12950.1| methyltransferase [Bacillus cereus G9241]
          Length = 250

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 33/68 (48%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A   + ++ ++ +   +E A  N+  + V NV+ +
Sbjct: 39  VKERCKLSDTLLDVGTGGGENVLNIASSANLLIGIDNSNGMIERAHSNLKKSGVQNVEFL 98

Query: 263 RMSSKEFT 270
           +M S+  T
Sbjct: 99  QMDSEALT 106


>gi|94309474|ref|YP_582684.1| methyltransferase type 11 [Cupriavidus metallidurans CH34]
 gi|93353326|gb|ABF07415.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Cupriavidus metallidurans CH34]
          Length = 256

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 31/74 (41%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             + + +          +L+L CG G+ S   A   + V+A +++   +E          
Sbjct: 31  EQLKQALAYLKPVAHSRVLDLGCGAGHASFAAATVANEVVAYDLSAAMLEVVAGAARDRG 90

Query: 256 VNNVKIVRMSSKEF 269
           + NVK  + ++++ 
Sbjct: 91  LGNVKTQQGAAEQL 104


>gi|229018463|ref|ZP_04175325.1| Methyltransferase Atu1041 [Bacillus cereus AH1273]
 gi|229024719|ref|ZP_04181158.1| Methyltransferase Atu1041 [Bacillus cereus AH1272]
 gi|228736562|gb|EEL87118.1| Methyltransferase Atu1041 [Bacillus cereus AH1272]
 gi|228742815|gb|EEL92953.1| Methyltransferase Atu1041 [Bacillus cereus AH1273]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAAR 248
            N  I    ++ ++   KG    +L+L CG+G+FS     +    V+ ++I+K  +E A+
Sbjct: 25  ANDFIEQPAIKSLILCLKGKS--VLDLGCGDGHFSKYCIENGAKNVIGIDISKNMIERAK 82

Query: 249 YNIAANHVNNVKIVRMSSKE 268
                N  +N++ + +  ++
Sbjct: 83  ---KLNQDDNIEFMCLPMED 99


>gi|323340128|ref|ZP_08080392.1| methyltransferase domain protein [Lactobacillus ruminis ATCC 25644]
 gi|323092319|gb|EFZ34927.1| methyltransferase domain protein [Lactobacillus ruminis ATCC 25644]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 19/112 (16%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            A    +   +L++ CG G   L LA+      V  V++ + ++E A+ N A N + NV 
Sbjct: 53  AAGGLELGDKILDVGCGYGPIGLSLAKKNPDAMVEMVDVNELALELAKKNAAKNTIKNVS 112

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           I   S  E                 ++    F TI  +PP     +   G++
Sbjct: 113 IHESSIYE-----------------NVEETNFSTIVTNPPIRAGKEVVHGIL 147


>gi|218662422|ref|ZP_03518352.1| putative methyltransferase protein [Rhizobium etli IE4771]
          Length = 243

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +AA  G    +L++ CG G  +   AR       + V+++   +E AR   AA  + NV 
Sbjct: 20  IAAGVGAGDRVLDIGCGAGQTTREAARAATQGEAVGVDVSAEMLEVARRRSAAEGLRNVV 79

Query: 261 IVRMSS 266
             +  +
Sbjct: 80  FEQADA 85


>gi|229815440|ref|ZP_04445772.1| hypothetical protein COLINT_02488 [Collinsella intestinalis DSM
           13280]
 gi|229808973|gb|EEP44743.1| hypothetical protein COLINT_02488 [Collinsella intestinalis DSM
           13280]
          Length = 190

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           MLE  L+        +L+ + G+G   L VL+R  +  +  ++ + +    + N+A    
Sbjct: 36  MLESALSEGIEGS-RVLDAFAGSGALGLEVLSRGAEHAVFFDLDRSAAALVKRNLAKLSC 94

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
              +   +   +   + RR R         +    F  + +DPP +      + +V+A
Sbjct: 95  APARFQVI-CGDVIASARRGR---------VPGGPFDAVLIDPPYALGSQPAIDLVEA 142


>gi|254418772|ref|ZP_05032496.1| ribosomal protein L11 methyltransferase [Brevundimonas sp. BAL3]
 gi|196184949|gb|EDX79925.1| ribosomal protein L11 methyltransferase [Brevundimonas sp. BAL3]
          Length = 288

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 212 DLLELYCGNGNFSLVLARHFDRV-LAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            +L++ CG G  ++  AR   R+ +  +I  PSV  A  N A N   +   V  S
Sbjct: 151 RVLDVGCGTGVLAIAAARTGSRIAVGTDIDAPSVRIANENAALNQA-HASFVHAS 204


>gi|121699691|ref|XP_001268111.1| RNA methylase family protein, putative [Aspergillus clavatus NRRL
           1]
 gi|119396253|gb|EAW06685.1| RNA methylase family protein, putative [Aspergillus clavatus NRRL
           1]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 44/124 (35%), Gaps = 8/124 (6%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEI 239
            ++++       +   + E +  +    +  L++ + G G  ++  AR     RV A+E 
Sbjct: 46  TDDAWFGVTPEPVANKIAEDIAKSVPAGRSILVDAFAGAGGNTIAFARTGKWKRVYAIEK 105

Query: 240 AKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRL----KDIDIHSYRFKT 294
               ++ A++N     V + +   +    E  +   +E     +           YR   
Sbjct: 106 NPAVLQCAKHNAKVYGVADKITWFQGDCFEILKNQLKELAPYSIVFASPPWGGPGYRSDK 165

Query: 295 IFVD 298
           +F  
Sbjct: 166 VFNM 169


>gi|21230309|ref|NP_636226.1| protoporphyrinogen oxidase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769697|ref|YP_244459.1| protoporphyrinogen oxidase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21111859|gb|AAM40150.1| protoporphyrinogen oxidase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575029|gb|AAY50439.1| protoporphyrinogen oxidase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 283

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 20/120 (16%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L   +   G  +++L  G+G  +L +A  R   +++A + +  ++  AR+N 
Sbjct: 97  TETLVELALERLELTAGVRVVDLGTGSGAIALAIASERPQAQLIATDASADALAIARHNA 156

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            A+ ++NV+                R  + L+   +   RF  I  +PP     D  +  
Sbjct: 157 HAHGLHNVEC---------------RLGHWLQ--PLAGERFDLIASNPPYIAAADPHLQQ 199


>gi|50121474|ref|YP_050641.1| putative metallothionein SmtA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612000|emb|CAG75449.1| putative S-adenosylmethionine-dependent methyltransferase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 261

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L  +LA        +L+   G G  +  LA    +VL  +++   ++ A+   AA  V +
Sbjct: 34  LSELLAKLPARPLRILDAGGGEGQMACRLAALGHQVLLCDVSDEMIQRAKNAAAAQGVSH 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ V+ ++++  Q M    + 
Sbjct: 94  NMRFVQCAAQDIAQYMESPADL 115


>gi|323703138|ref|ZP_08114792.1| Methyltransferase type 11 [Desulfotomaculum nigrificans DSM 574]
 gi|323531915|gb|EGB21800.1| Methyltransferase type 11 [Desulfotomaculum nigrificans DSM 574]
          Length = 271

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 16/141 (11%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +  A  +              G AN++       Y  E++    + L+     ++F   N
Sbjct: 11  QSYARAITQKGGCCGGSSCCGGAANQSNPITGGLYGSEQVAGLPQDLV----ASTFGCGN 66

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAAR 248
                 +              +L+L CG G   L+ AR      +   +++    +  AR
Sbjct: 67  PTALTEL---------HPGEVVLDLGCGAGLDVLLSARRVGPTGKAYGLDMTDEMIAEAR 117

Query: 249 YNIAANHVNNVKIVRMSSKEF 269
            N A   + NV+ ++   +  
Sbjct: 118 ANQARTGITNVEFLKGHLEAI 138


>gi|314923483|gb|EFS87314.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL001PA1]
 gi|314966527|gb|EFT10626.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL082PA2]
 gi|327327351|gb|EGE69127.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL103PA1]
          Length = 291

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 79  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGACPSVIDLCTGTGAIALAV 135

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+     + V+++   +       RR          
Sbjct: 136 ASEVPGSRVSAVEVDDAALMWTRRNL---GDSGVEVLTGDALRVPDDGRR---------- 182

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 183 ------FDIVVTNPP 191


>gi|312139241|ref|YP_004006577.1| sam dependent methyltransferase [Rhodococcus equi 103S]
 gi|311888580|emb|CBH47892.1| putative SAM dependent methyltransferase [Rhodococcus equi 103S]
          Length = 244

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E +         D+L++ CG G    V A     V+ VE   P V +AR     +    +
Sbjct: 42  EALAELADWCGRDVLDVGCGAGFHLPVFAERARSVVGVEPHPPLVASAR--ARVDGHPAI 99

Query: 260 KIVRMSSKEF 269
            +++ S++  
Sbjct: 100 SVLQGSAEAL 109


>gi|311113255|ref|YP_003984477.1| methyltransferase domain-containing protein [Rothia dentocariosa
           ATCC 17931]
 gi|310944749|gb|ADP41043.1| methyltransferase domain protein [Rothia dentocariosa ATCC 17931]
          Length = 248

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 22/121 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +    +     +L++ CG G  +L LA       V  +++   S+     N  A  ++NV
Sbjct: 90  LAQVPEPHGKYMLDIGCGWGPITLSLAMLAPQSEVYGIDVNSRSLSLTEQNARALGLHNV 149

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
            +                      D    + RF TI+ +PP R G +     ++   P +
Sbjct: 150 SVST-------------------PDEIDPTLRFDTIWSNPPIRVGKEVLHNILLAWLPRL 190

Query: 319 L 319
            
Sbjct: 191 A 191


>gi|325673454|ref|ZP_08153145.1| methyltransferase domain protein [Rhodococcus equi ATCC 33707]
 gi|325555475|gb|EGD25146.1| methyltransferase domain protein [Rhodococcus equi ATCC 33707]
          Length = 244

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E +         D+L++ CG G    V A     V+ VE   P V +AR     +    +
Sbjct: 42  EALAELADWCGRDVLDVGCGAGFHLPVFAERARSVVGVEPHPPLVASAR--ARVDGHPAI 99

Query: 260 KIVRMSSKEF 269
            +++ S++  
Sbjct: 100 SVLQGSAEAL 109


>gi|282853791|ref|ZP_06263128.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Propionibacterium acnes J139]
 gi|282583244|gb|EFB88624.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Propionibacterium acnes J139]
 gi|314981452|gb|EFT25546.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL110PA3]
 gi|315092116|gb|EFT64092.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL110PA4]
          Length = 291

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 79  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGACPSVIDLCTGTGAIALAV 135

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+     + V+++   +       RR          
Sbjct: 136 ASEVPGSRVSAVEVDDAALMWTRRNL---GDSGVEVLTGDALRVPDDGRR---------- 182

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 183 ------FDIVVTNPP 191


>gi|284037496|ref|YP_003387426.1| methyltransferase type 11 [Spirosoma linguale DSM 74]
 gi|283816789|gb|ADB38627.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
          Length = 259

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 45/200 (22%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLL------------ELYCGNGNFSLVLARHFDRVLA 236
           Q N   N  + +   A       D+L            +L CG G  +  +A    +++ 
Sbjct: 3   QLNRSWNADLYQQKHAFVFHFGEDVLNLLDPQPGERILDLGCGTGELTARIAESGAKIIG 62

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           ++ +   +  AR +       ++      ++ F      +  F+      I+     ++ 
Sbjct: 63  LDASLSMISKARES-----FPHLSFQEGDARNFGTDQPFDAIFSNATLHWINETEQPSVL 117

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISCNPDSL------CRDLSILSTT-HTIERLALF-- 347
                     A    ++     +        L       R L+ L+   + +  L     
Sbjct: 118 A---------AVFKALKPGGRFV------AELGGRGNVARILNALAKALNELGMLQPVNP 162

Query: 348 DQFP----YTRHMECGVLLV 363
           + FP    YT  +E     V
Sbjct: 163 NFFPSVGEYTTLLETVGFFV 182


>gi|228946215|ref|ZP_04108547.1| Methyltransferase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229184806|ref|ZP_04311998.1| Methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228598611|gb|EEK56239.1| Methyltransferase [Bacillus cereus BGSC 6E1]
 gi|228813446|gb|EEM59735.1| Methyltransferase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 212

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A+ N   + V NV+  
Sbjct: 1   MKERCKLSDTLLDVGTGGGENVLNIASSAKLLIGIDNSNGMIETAQSNFKKSGVQNVEFF 60

Query: 263 RMSSKEFT 270
           +M S+  T
Sbjct: 61  QMDSEALT 68


>gi|90407673|ref|ZP_01215853.1| Methylase of polypeptide chain release factor [Psychromonas sp.
           CNPT3]
 gi|90311264|gb|EAS39369.1| Methylase of polypeptide chain release factor [Psychromonas sp.
           CNPT3]
          Length = 277

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 59/190 (31%), Gaps = 41/190 (21%)

Query: 113 QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT 172
           Q +   +     RLL D  +E    L D     + +   +     T     R++      
Sbjct: 33  QKESVYLMTWPERLLTDMQKEAYKALID----ERIKGVPVAYLTGT-----REFWSLPFK 83

Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF- 231
           V   TLI R                ++E+ L         +L+L  G G   L LA    
Sbjct: 84  VNASTLIPR-----------ADTETLVEYALQVCSPNSH-ILDLGTGTGAIILALASELP 131

Query: 232 -DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
             +  AV+    +V+ A  N  A  ++NV I +                           
Sbjct: 132 HAQCSAVDFNADAVQLAIENRQALKLDNVNIYQSD------------------WFSQVHG 173

Query: 291 RFKTIFVDPP 300
           RF  I  +PP
Sbjct: 174 RFDLIVSNPP 183


>gi|15890802|ref|NP_356474.1| protoporphyrinogen oxidase [Agrobacterium tumefaciens str. C58]
 gi|15159087|gb|AAK89259.1| protoporphyrinogen oxidase [Agrobacterium tumefaciens str. C58]
          Length = 289

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 19/93 (20%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAV--EIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L+L  G G   L L +   +   +  +I+  ++E A  N A N ++          
Sbjct: 123 SARILDLGTGTGAICLALLKECAQASGIGSDISADALETAAKNAARNGLD---------- 172

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                     E  R    +  S RF  I  +PP
Sbjct: 173 -------SRFETIRSNWFEKISGRFDIIVSNPP 198


>gi|315103526|gb|EFT75502.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL050PA2]
          Length = 291

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 79  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGACPSVIDLCTGTGAIALAV 135

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+     + V+++   +       RR          
Sbjct: 136 ASEVPGSRVSAVEVDDAALMWTRRNL---GDSGVEVLTGDALRVPDDGRR---------- 182

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 183 ------FDIVVTNPP 191


>gi|331236129|ref|XP_003330724.1| 3-demethylubiquinone-9 3-methyltransferase [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
 gi|309309714|gb|EFP86305.1| 3-demethylubiquinone-9 3-methyltransferase [Puccinia graminis f.
           sp. tritici CRL 75-36-700-3]
          Length = 347

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
             +        +L++ CG G FS VLAR   +VLA++ A+ S++AAR +  ++ + N
Sbjct: 126 ADSYDFLAGKRVLDVGCGGGIFSEVLARLGAQVLAIDAAEDSIKAARLHAQSDPLLN 182


>gi|317151873|ref|YP_004119921.1| type 11 methyltransferase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942124|gb|ADU61175.1| Methyltransferase type 11 [Desulfovibrio aespoeensis Aspo-2]
          Length = 238

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +L+ VLA        LLEL CG G    +L +    V  ++ +   + AAR      
Sbjct: 24  ETRLLQSVLAGWPRRGHKLLELGCGTGLILEMLYQMGFDVTGLDNSPEMIMAARR----- 78

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + N   + + + E T     E ++  +      S     +  +  R       VG +  
Sbjct: 79  RLGNRAELHLGNGELTPYADNEFDYALIWATLEFSDDPAAMLTEAARVAEKGVLVGFLNK 138

Query: 315 Y 315
           +
Sbjct: 139 H 139


>gi|229172801|ref|ZP_04300356.1| Methyltransferase [Bacillus cereus MM3]
 gi|228610689|gb|EEK67956.1| Methyltransferase [Bacillus cereus MM3]
          Length = 206

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       +
Sbjct: 1   MEKLVLQYAPPHSHILDLCCGTGHLTKKLIDNTFLVTGIDGSVQMIEYARQNA-----PD 55

Query: 259 VKIVRMSSKEF 269
              +   ++ F
Sbjct: 56  ATFIVDDARYF 66


>gi|303274456|ref|XP_003056548.1| hypothetical protein MICPUCDRAFT_55679 [Micromonas pusilla
           CCMP1545]
 gi|226462632|gb|EEH59924.1| hypothetical protein MICPUCDRAFT_55679 [Micromonas pusilla
           CCMP1545]
          Length = 322

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 213 LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
           +L+L+CG G  ++  AR    RVLA +I +  ++ A        V + +  V   +  F 
Sbjct: 140 VLDLFCGAGGNTIAFARCAGARVLACDINETRLDMADKVSLIYGVQHSINFVCNDANAFL 199

Query: 271 QAMR-REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             +R   RE     D   +  +   IF+ PP  G   + V 
Sbjct: 200 NCLRLFSREGAGCYDDVENVEKVDMIFLSPPWGGPGYSIVD 240


>gi|145594015|ref|YP_001158312.1| methyltransferase small [Salinispora tropica CNB-440]
 gi|145303352|gb|ABP53934.1| methyltransferase small [Salinispora tropica CNB-440]
          Length = 494

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 18/89 (20%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+L  G+G  +L LA H  RV A ++++ ++  A    A N   + +++R        
Sbjct: 158 TALDLGTGSGIQALHLATHARRVTATDLSERALRFAATTAALNG-QDWELLRGDL----- 211

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                          +   RF  +  +PP
Sbjct: 212 ------------IAPVAGRRFDLVVSNPP 228


>gi|119193420|ref|XP_001247316.1| hypothetical protein CIMG_01087 [Coccidioides immitis RS]
          Length = 240

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 8/123 (6%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEI 239
            ++++       +   +   + AA    +  +++ + G G  ++  AR     RV A+E 
Sbjct: 46  TDDAWFGVTPEPVANKIAAHMTAAAPQKKSIVIDTFAGVGGNAIAFARSNKWRRVYAIEK 105

Query: 240 AKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRERE----FNRLKDIDIHSYRFKT 294
              S++ A++N     V + +   +    E  +   ++                 YR   
Sbjct: 106 NPASLQCAKHNAKIYGVEDKITWFQGDCFEILKTQLKDLAPYSVIFASPPWGGPGYRSDK 165

Query: 295 IFV 297
           +F 
Sbjct: 166 VFN 168


>gi|330505434|ref|YP_004382303.1| SAM-dependent methyltransferase [Pseudomonas mendocina NK-01]
 gi|328919720|gb|AEB60551.1| SAM-dependent methyltransferase [Pseudomonas mendocina NK-01]
          Length = 399

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 27/139 (19%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
               A       +L+L+   G + +   A     V  V+ +  +++    N   N     
Sbjct: 213 RARLAPYVKGKRVLDLFSYIGGWGVQAAAFGASEVFCVDASGFALDGVERNANLNGF--A 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------------L 304
           + V     +   A+R  +             RF  +  DPP                  L
Sbjct: 271 EKVTCVEGDVFAALRELKSAEE---------RFDVVIADPPAFIKRKKDIKNGEAAYRRL 321

Query: 305 DDATVGMVQAYPHILYISC 323
           ++  + ++     ++  SC
Sbjct: 322 NETAMRLLNKDGILVSASC 340


>gi|324997812|ref|ZP_08118924.1| methyltransferase small [Pseudonocardia sp. P1]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 22/119 (18%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVK 260
            A    ++G LL++ CG G  +L +A    R  V AV++ + ++   R N  A  + NV 
Sbjct: 52  AAPMPAVRGPLLDVGCGYGPVALTIAARRRRLPVWAVDLNERALGLTRANAGAAGLGNVT 111

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
                                  D       F  I+ +PP RSG       +++  P +
Sbjct: 112 ACV-------------------PDDVPGDLSFAGIYSNPPIRSGKPALHELLLRWLPRL 151


>gi|319942739|ref|ZP_08017044.1| hypothetical protein HMPREF9464_02263 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803681|gb|EFW00625.1| hypothetical protein HMPREF9464_02263 [Sutterella wadsworthensis
           3_1_45B]
          Length = 246

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 8/72 (11%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ++  +  +       +L++  G G F+ +L+     V+ +++    +  A+      +
Sbjct: 37  EEIVPKLPESADNKPLRVLDVGAGTGFFTFLLSPLGHEVVGIDLTPAMIAKAKELARHLN 96

Query: 256 VNNVKIVRMSSK 267
           ++  +   M ++
Sbjct: 97  IS-AEFFVMDAE 107


>gi|302543276|ref|ZP_07295618.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460894|gb|EFL23987.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 393

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 38/120 (31%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
                        + +L CG G  ++ +AR    VLAV+    +   AR N  A  ++ +
Sbjct: 91  YRADRLAGFGVRSVADLCCGIGGDAIAMARAGLSVLAVDRDPLTCAVARANADALGLSQL 150

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
             VR +          +  F            F      PP S   +A     +A   I 
Sbjct: 151 IEVRCADVTGIDTSSYDAVFVDPARRGGRGRVFDPEAYSPPLSWAIEAARTTPRAALKIA 210


>gi|297521848|ref|ZP_06940234.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli OP50]
          Length = 287

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|317133101|ref|YP_004092415.1| methyltransferase small [Ethanoligenens harbinense YUAN-3]
 gi|315471080|gb|ADU27684.1| methyltransferase small [Ethanoligenens harbinense YUAN-3]
          Length = 240

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 20/134 (14%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVE 245
           TQ +      +L     A         +L  G G   L+  R      V AVE+   + E
Sbjct: 20  TQTHGFGADAVL-LAHFAAPKPGARSADLCSGCGIVPLLWCRDDPVRAVDAVELLPEAAE 78

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS--G 303
            AR +  AN   N+++     +    A                + ++  +  +PP    G
Sbjct: 79  LARRSAEANGFANLRVFGQDLRTLPAAF---------------AGQYDLVACNPPYRPVG 123

Query: 304 LDDATVGMVQAYPH 317
               +    +    
Sbjct: 124 AGRESADTARETAR 137


>gi|240171231|ref|ZP_04749890.1| methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 181

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIV 262
           A      G  LEL CG G  S+ LAR    V  V+I+  ++  AR   A     +  +  
Sbjct: 34  ADVFPTAGKALELACGPGLGSVWLARRGLEVWGVDISTVAIGQARDLAARCGVADRCQFD 93

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            +                  K +D    R     + P
Sbjct: 94  VVDLDAGLPPGPPVDVIVCHKFLDPRLDRPIVARLAP 130


>gi|237746595|ref|ZP_04577075.1| modification methylase HemK [Oxalobacter formigenes HOxBLS]
 gi|229377946|gb|EEO28037.1| modification methylase HemK [Oxalobacter formigenes HOxBLS]
          Length = 302

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 19/185 (10%)

Query: 101 RAKLFQIDYLTSQSDQA--IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
           R KLF      +  D+A  ++       LD         L   L      +  I     T
Sbjct: 25  REKLFFGHGSENAFDEAAYLILHTLSLPLDRLEPFLDATL---LPEETEAVMTIIDRRVT 81

Query: 159 KICLDRDYVDERLTVAGRTLIYR--QIENSFTQPNAGINVHMLEWVLAATKGIQG--DLL 214
           +        +E         + R   I  SF      +   ++E          G  D+L
Sbjct: 82  ERIPAAYLTNEAWLQGYSFYVERGVIIPRSF------LAELIVEQFAPWVSDPDGITDIL 135

Query: 215 ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           EL  G+G  +++LA  F    V AVE++  ++  A+ NI  N       +++   +    
Sbjct: 136 ELCTGSGCLAIMLADRFANATVDAVELSPAALGIAQTNI--NRYGMKDRIQLHHADLYDG 193

Query: 273 MRRER 277
           +  +R
Sbjct: 194 IPEKR 198


>gi|229018208|ref|ZP_04175081.1| Methyltransferase type 11 [Bacillus cereus AH1273]
 gi|228743133|gb|EEL93260.1| Methyltransferase type 11 [Bacillus cereus AH1273]
          Length = 261

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + +LA  F  V+A+++ +  +E A+  I  N 
Sbjct: 31  QYVVQQVASRHNN---RLLDIATGGGHVANLLAPMFKEVVALDLTEKMLEKAKGFIEGNG 87

Query: 256 VNNVKIVRMSSKEFTQA 272
             NV  V   ++    A
Sbjct: 88  HENVSFVAGHAERLPFA 104


>gi|229164276|ref|ZP_04292209.1| Protein hemK [Bacillus cereus R309803]
 gi|228619216|gb|EEK76109.1| Protein hemK [Bacillus cereus R309803]
          Length = 283

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE V       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERVERHFGDKELHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              VK                     L        +   +  +PP
Sbjct: 162 AE-VKFYHGDL---------------LSPFYETGQKLDIVVSNPP 190


>gi|160934044|ref|ZP_02081431.1| hypothetical protein CLOLEP_02906 [Clostridium leptum DSM 753]
 gi|156866717|gb|EDO60089.1| hypothetical protein CLOLEP_02906 [Clostridium leptum DSM 753]
          Length = 253

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           + + L    ++L  RQ   S       + +  L +V          + +L CG G  ++V
Sbjct: 8   IFDLLIETHKSL-ERQGPGS-----PEMTLRALSFV--ENLNENSRIADLGCGTGGQTMV 59

Query: 227 LARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           LA++    +  V++    ++    N   NH+   +  +  S++  
Sbjct: 60  LAQNTAGHITGVDMVPDFIDIFNNNAKRNHLEGRIAGIVGSAESL 104


>gi|116515053|ref|YP_802682.1| hypothetical protein BCc_112 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256907|gb|ABJ90589.1| N5-glutamine methyltransferase, release factors activity modulator
           [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 277

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIA 252
              ++E VL      +  +LEL  G+G  SL LA      +++  +I+  ++  A+YN  
Sbjct: 95  TEILVEQVLLKVSSTKNSILELGTGSGAISLALASENSQLKIIGTDISLYALLIAKYNAD 154

Query: 253 ANHVNNVKIV 262
             ++NNVK +
Sbjct: 155 KLNLNNVKFI 164


>gi|157869562|ref|XP_001683332.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126397|emb|CAJ03862.1| hypothetical protein LMJF_23_0100 [Leishmania major strain
           Friedlin]
          Length = 260

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
               M EW+ + +   QG  +LEL CG G     +A+H  +V+  + +  S+     ++A
Sbjct: 87  AAYPMCEWIHSHSSMFQGKCVLELGCGAGALGFTVAQHARQVVLTDCSPVSLALVLESVA 146

Query: 253 ANHVNNVKIVRM 264
            N   N  +  +
Sbjct: 147 RNGYCNCGVAVL 158


>gi|325271646|ref|ZP_08138147.1| type 11 methyltransferase [Pseudomonas sp. TJI-51]
 gi|324103218|gb|EGC00564.1| type 11 methyltransferase [Pseudomonas sp. TJI-51]
          Length = 254

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 29/63 (46%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +L+L CG G+ S  +A     V+A ++++  ++      A   + N+   R +++  
Sbjct: 45  AARVLDLGCGAGHVSFHVAPLVAEVVAYDLSQAMLDVVASAAAERGLGNIITERGAAERL 104

Query: 270 TQA 272
             A
Sbjct: 105 PFA 107


>gi|313839310|gb|EFS77024.1| methyltransferase small domain protein [Propionibacterium acnes
           HL086PA1]
          Length = 362

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 20/105 (19%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  ++++      AN 
Sbjct: 209 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAIDSTHLTAQANQ 268

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++ V                         +DI +     +  +PP
Sbjct: 269 LDIVTHWCDGL------------------VDIPNESVDVVVTNPP 295


>gi|310829490|ref|YP_003961847.1| hypothetical protein ELI_3940 [Eubacterium limosum KIST612]
 gi|308741224|gb|ADO38884.1| hypothetical protein ELI_3940 [Eubacterium limosum KIST612]
          Length = 279

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 31/60 (51%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            + A     +  +L++ CG G  S+ +A     V ++++++  +E  + N AA  V+N+ 
Sbjct: 52  QLDALIITKEDTVLDVGCGPGRLSVPIAGMAKSVTSLDVSQQMLEKCQENAAAAGVSNLT 111


>gi|262301095|gb|ACY43140.1| arg methyltransferase [Scutigera coleoptrata]
          Length = 246

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKEF 269
           +L++ CG G   +  A+    +V+ +E +   VE A   IAANH++++   VR   +E 
Sbjct: 26  VLDIGCGTGILCMFAAKAGAAKVIGIECSSI-VEHAEKIIAANHLDDIIFIVRGKVEEV 83


>gi|206973723|ref|ZP_03234641.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus H3081.97]
 gi|206747879|gb|EDZ59268.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus H3081.97]
          Length = 261

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFQEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|163794459|ref|ZP_02188430.1| Ribosomal protein L11 methylase [alpha proteobacterium BAL199]
 gi|159180183|gb|EDP64706.1| Ribosomal protein L11 methylase [alpha proteobacterium BAL199]
          Length = 292

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+L CG+G  ++  A+     R++AV++  PSV  A  N   N 
Sbjct: 154 VLDLGCGSGILAMATAKLVPSSRIVAVDLDPPSVTTAAENARLNG 198


>gi|157164270|ref|YP_001466874.1| serine protease [Campylobacter concisus 13826]
 gi|112801284|gb|EAT98628.1| methyltransferase domain family [Campylobacter concisus 13826]
          Length = 279

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +L++ CG    S+ L++    V A++     +E A+ N       N+  ++      
Sbjct: 61  DDSVLDVGCGPARLSVPLSKLAKSVSALDPFAKMLEYAKKNAKEAGAKNINFIQKD---- 116

Query: 270 TQAMRREREFNRLKDIDI 287
               R E     L   DI
Sbjct: 117 ---WRDETSIKDLPKHDI 131


>gi|330508464|ref|YP_004384892.1| methyltransferase domain-containing protein [Methanosaeta concilii
           GP-6]
 gi|328929272|gb|AEB69074.1| methyltransferase domain protein [Methanosaeta concilii GP-6]
          Length = 297

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +       +  +L++  G G  ++ LA+    V AVE A       R  +A   V N+ I
Sbjct: 58  IWETDITEKSRVLDIGAGPGTLAIPLAQKATHVTAVEPADGMCSVMREKMAEYGVENITI 117

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
           V+   +E   A    R+ +   D+ + S+    +        + DA   M+QA    +Y+
Sbjct: 118 VQKRWEEVDVA----RDLDPPYDVVVASFSLGMM-------DIRDAIEKMIQASSRYIYL 166


>gi|329904069|ref|ZP_08273664.1| putative methyltransferase [Oxalobacteraceae bacterium IMCC9480]
 gi|327548153|gb|EGF32867.1| putative methyltransferase [Oxalobacteraceae bacterium IMCC9480]
          Length = 220

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G G   L   +R   RV  VE +   V          + + V I+R  ++   Q 
Sbjct: 72  LDLFAGTGALGLEAASRGAARVTLVEESPAVVRQLEATRDKLNASQVSILRGDARAVVQG 131

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSG----LDDATVGMVQAYPHILYI 321
           ++R             + RF  IF+DPP               +      +Y+
Sbjct: 132 LQRRLTGP--------ADRFNLIFLDPPFHADWLPAMLPLCAALLDERGFIYV 176


>gi|322513488|ref|ZP_08066598.1| protein methyltransferase HemK [Actinobacillus ureae ATCC 25976]
 gi|322120707|gb|EFX92591.1| protein methyltransferase HemK [Actinobacillus ureae ATCC 25976]
          Length = 290

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 4/102 (3%)

Query: 196 VHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNI 251
              LEW            +L+L  G G  +L LA       +++ V+    +V  A  N 
Sbjct: 106 EVALEWAYKRLEIQKTLQILDLGTGTGAIALALASELGDQAQIIGVDFKPEAVVLAETNR 165

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
                 NV  ++       +  + E   +    ID      K
Sbjct: 166 QNLGFQNVTFLQSDWFSALENQQFELIVSNPPYIDKQDENLK 207


>gi|312891361|ref|ZP_07750878.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296055|gb|EFQ73207.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Mucilaginibacter paludis DSM 18603]
          Length = 278

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 13/115 (11%)

Query: 163 DRDYVDERLTVAGRTLIYRQIEN---SFT----QPNAGINVHMLEWVLAATKGIQGDLLE 215
           D+ YV            Y+ + +   +F     Q  + +   MLE  L         +L+
Sbjct: 94  DQIYVRATFHEPKPDFAYQIVIDPKMAFGTGHHQTTSMMMDFMLEVDL-----KNKKVLD 148

Query: 216 LYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + CG G  +++ ++   R V A++  +   ++   N A N +NN+  +  S +  
Sbjct: 149 MGCGTGILAILASKMGSRAVTAIDYDEICYDSTIENSALNGINNITPLCGSKEAI 203


>gi|255016895|ref|ZP_05289021.1| hypothetical protein LmonF_01871 [Listeria monocytogenes FSL
           F2-515]
          Length = 184

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  +
Sbjct: 61  GKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 120

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                            ++ +  ++ I  +PP          +++ 
Sbjct: 121 -----------------NVTANDYQAIISNPPIRAGKKIVHAILEG 149


>gi|253583475|ref|ZP_04860673.1| methyltransferase [Fusobacterium varium ATCC 27725]
 gi|251834047|gb|EES62610.1| methyltransferase [Fusobacterium varium ATCC 27725]
          Length = 393

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 24/166 (14%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIY--RQIEN---SFTQPNAGINVHMLEWVLAA 205
           L G   KT I      + ER+ +    L Y    IE     F      ++       +  
Sbjct: 160 LEGVEQKTGIVFGE--IPERVIMEDNGLKYSIDIIEGQKTGFF-----LDQRDSRKFIRK 212

Query: 206 TKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   L+++  +G FS+  L  +  +V A++    ++E  R N   N  +    V M
Sbjct: 213 YLTKDTKFLDVFSSSGGFSMAALKENCKKVTAIDKEPHALELCRENYILNGFDG-DFVTM 271

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
               F            LK +   + +F  I +DPP      A + 
Sbjct: 272 EGDAFL----------LLKTLVGRNEKFDVITLDPPSLIKRKADIH 307


>gi|165975740|ref|YP_001651333.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165875841|gb|ABY68889.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 245

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 179 IYRQIENSFTQPNAG------INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
            + ++  ++  PN        +N   L+++     G+ G  +L++ CG G  S  +AR  
Sbjct: 22  KFEKMAATWWDPNGSFKPIHLLNPLRLDYIQQKANGLFGKKVLDVGCGGGILSEAMARAG 81

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             V  +++    +E AR +   N ++ +   + + ++F Q
Sbjct: 82  ATVTGIDMTTEPLEVARKHAEENGLS-IDYRQTTIEDFVQ 120


>gi|154151797|ref|YP_001405415.1| methyltransferase type 12 [Candidatus Methanoregula boonei 6A8]
 gi|154000349|gb|ABS56772.1| Methyltransferase type 12 [Methanoregula boonei 6A8]
          Length = 213

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR---MSSKE 268
             ++L CG G++ + LA     V  V+ +  ++  A+ +          +V        E
Sbjct: 42  RAVDLGCGAGSYVIYLAGLGFDVTGVDSSPAAIRIAQAHAKKQGARCRFVVADLLGDLHE 101

Query: 269 FTQAMRREREFNRLKDI 285
            T       ++  L  I
Sbjct: 102 VTSTFDFAYDWELLHHI 118


>gi|118463025|ref|YP_879711.1| methylase, putative [Mycobacterium avium 104]
 gi|118164312|gb|ABK65209.1| methylase, putative [Mycobacterium avium 104]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 19/90 (21%)

Query: 212 DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L  G+G  ++  A      V A +    +V  AR N A   V+             
Sbjct: 40  RVLDLCTGSGFVAIAAAEMGCASVTAFDKCPHAVRCARENAALAGVD------------- 86

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                 RE + L  +D     F  +  +PP
Sbjct: 87  ---VDVREGSWLAAVDCAP--FDVVVSNPP 111


>gi|41406471|ref|NP_959307.1| hypothetical protein MAP0373 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394820|gb|AAS02690.1| hypothetical protein MAP_0373 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 229

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 19/90 (21%)

Query: 212 DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L  G+G  ++  A      V A +    +V  AR N A   V+             
Sbjct: 40  RVLDLCTGSGFVAIAAAEMGCASVTAFDKCPHAVRCARENAALAGVD------------- 86

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                 RE + L  +D     F  +  +PP
Sbjct: 87  ---VDVREGSWLAAVDCAP--FDVVVSNPP 111


>gi|16802302|ref|NP_463787.1| hypothetical protein lmo0256 [Listeria monocytogenes EGD-e]
 gi|224502450|ref|ZP_03670757.1| hypothetical protein LmonFR_08004 [Listeria monocytogenes FSL
           R2-561]
 gi|255028588|ref|ZP_05300539.1| hypothetical protein LmonL_04186 [Listeria monocytogenes LO28]
 gi|16409621|emb|CAD00783.1| lmo0256 [Listeria monocytogenes EGD-e]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 19/106 (17%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  +
Sbjct: 61  GKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 120

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                            ++ +  ++ I  +PP          +++ 
Sbjct: 121 -----------------NVTANDYQAIISNPPIRAGKKIVHAILEG 149


>gi|127513839|ref|YP_001095036.1| HemK family modification methylase [Shewanella loihica PV-4]
 gi|126639134|gb|ABO24777.1| modification methylase, HemK family [Shewanella loihica PV-4]
          Length = 280

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 15/168 (8%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR-DALHARKYQIQLIGRANKTKI 160
            +L  +        + ++  I H+     +     RL  + +   K  +           
Sbjct: 14  TRLQDVSDSAKLDAEVMLLHIIHKQRSYLYTWPDERLTSEQVTEYKQMVGRRELGTPIAH 73

Query: 161 CLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
            +  R++      V   TLI R                ++E  L         +L+L  G
Sbjct: 74  IVGEREFWSLPFMVNPTTLIPRPD-----------TEILVETALNLPLAENAKVLDLGTG 122

Query: 220 NGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            G  +L LA  R   ++ AV+    +V  A+ N     +  V++++  
Sbjct: 123 TGAIALSLAFERSNWQITAVDKVLEAVALAKANRDNLKLPQVEVLQSD 170


>gi|71274821|ref|ZP_00651109.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase
           [Xylella fastidiosa Dixon]
 gi|71900925|ref|ZP_00683039.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase
           [Xylella fastidiosa Ann-1]
 gi|71164553|gb|EAO14267.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase
           [Xylella fastidiosa Dixon]
 gi|71729284|gb|EAO31401.1| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase
           [Xylella fastidiosa Ann-1]
          Length = 215

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L   +AA   +   L++L CG G  +   A+   RV+A++ A   V  A     A  + 
Sbjct: 67  LREAVAAELPVGARLIDLGCGTGLDAQAFAQRGYRVMAIDGASTMVAPAHQRAQAVGLE 125


>gi|330467423|ref|YP_004405166.1| 3-demethylubiquinone-9 3-methyltransferase protein [Verrucosispora
           maris AB-18-032]
 gi|328810394|gb|AEB44566.1| 3-demethylubiquinone-9 3-methyltransferase protein [Verrucosispora
           maris AB-18-032]
          Length = 247

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 42/135 (31%), Gaps = 21/135 (15%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                    G LL++  G G   L LA  F  V  +E     +  AR   AA+ V  V  
Sbjct: 3   AGELGLDGSGQLLDVGSGPGTVGLQLAPFFAHVTLLEPDADMLAEARVWAAADRVAGVDF 62

Query: 262 VRMSSKEF----TQAMR------------REREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           VR ++++        MR            R R    + D          I  DP R    
Sbjct: 63  VRATAEDLPHLRLPQMRTVTFGQSFHRTDRVRVAEAVWDALEPGGAIVLIVHDPTRP--- 119

Query: 306 DATVGMVQAYPHILY 320
                 +   P I +
Sbjct: 120 --APQQLPDMPPIAH 132


>gi|294055335|ref|YP_003548993.1| protein of unknown function methylase putative [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614668|gb|ADE54823.1| protein of unknown function methylase putative [Coraliomargarita
           akajimensis DSM 45221]
          Length = 288

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 14/109 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-- 258
              +  +    + L L+  +G  +L  A+   +   V+ +K  V+ AR N   N + +  
Sbjct: 111 KAESKRRNTPLNFLNLFAYSGGATLAGAKGGAQCCHVDASKGMVQWARENAKINGLEDHP 170

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           ++ +     +F Q     RE  R         R+  I +DPP  G    
Sbjct: 171 IRWIIDDVNKFLQ-----REIRR-------GRRYDGILLDPPSFGRGKG 207


>gi|307731030|ref|YP_003908254.1| 50S ribosomal protein L11 methyltransferase [Burkholderia sp.
           CCGE1003]
 gi|307585565|gb|ADN58963.1| ribosomal protein L11 methyltransferase [Burkholderia sp. CCGE1003]
          Length = 300

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LA+      V  ++I   +VE+AR+N   N  
Sbjct: 156 MEWLEQSVKPGQS-VLDYGCGSGILAI-LAKKCGADPVYGIDIDPQAVESARHNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|312113113|ref|YP_004010709.1| protein-L-isoaspartate O-methyltransferase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311218242|gb|ADP69610.1| protein-L-isoaspartate O-methyltransferase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 205

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             I  +M E +       + D+LE+  G+G  + +L+R    V  +EI +     A    
Sbjct: 62  PYIVAYMTERL---NVQRKHDVLEIGTGSGYQTAILSRLARHVYTIEIHEELHRLAVARF 118

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            A  + N+  +       ++     R F+R+
Sbjct: 119 KALGLTNITALCGDG---SKGWPVPRLFDRI 146


>gi|302555247|ref|ZP_07307589.1| thiopurine S-methyltransferase superfamily [Streptomyces
           viridochromogenes DSM 40736]
 gi|302472865|gb|EFL35958.1| thiopurine S-methyltransferase superfamily [Streptomyces
           viridochromogenes DSM 40736]
          Length = 241

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++L CGNG  +  LA  F RV+ V+++  +++ AR    A+        ++ + E ++A
Sbjct: 53  LVDLGCGNGTQTRFLADRFPRVMGVDLSAAALDHARR---ADPAGQAVYRQLDAAEKSEA 109

Query: 273 MRREREFN 280
                E  
Sbjct: 110 QALHAELG 117


>gi|239932054|ref|ZP_04689007.1| precorrin-6Y C5,15-methyltransferase [Streptomyces ghanaensis ATCC
           14672]
 gi|291440422|ref|ZP_06579812.1| precorrin-6y C5,15-methyltransferase [Streptomyces ghanaensis ATCC
           14672]
 gi|291343317|gb|EFE70273.1| precorrin-6y C5,15-methyltransferase [Streptomyces ghanaensis ATCC
           14672]
          Length = 163

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + ++  G+G+ ++  AR    V AVE     VE  R N AA+ V+ V++V  ++ +    
Sbjct: 1   MWDVGAGSGSVAVECARLGAAVTAVEKTPDGVERIRANAAAHGVD-VRVVHGTAPDALSG 59

Query: 273 MRRER 277
           +    
Sbjct: 60  LDGPD 64


>gi|254171789|ref|ZP_04878465.1| methyltransferase [Thermococcus sp. AM4]
 gi|214033685|gb|EEB74511.1| methyltransferase [Thermococcus sp. AM4]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 27/111 (24%)

Query: 194 INVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARY 249
           +   +L W+  +   I G ++ +L  G G   L +       ++V AVEI + ++E AR 
Sbjct: 32  VASELL-WLAHSAGDIAGKVVADL--GTGTGVLAIGAKLLGAEKVYAVEIDEKALEVARR 88

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N     V+ V+ +     EF                   + R  T+ ++PP
Sbjct: 89  NAERAGVD-VEFINADVSEF-------------------NERVDTVIMNPP 119


>gi|171911848|ref|ZP_02927318.1| modification methylase, HemK family protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 307

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 17/153 (11%)

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR-DYVDERLTV 173
           +  +  ++  R LD   R         L   +  ++  G     +  L   ++ D     
Sbjct: 28  EHLLAHVLGCRRLDLYLRFDQTLAEPELQPLRVLLKRRGEGEPLQHLLGTVEFHDSEFVC 87

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ---GDLLELYCGNGNFSLVLARH 230
             R LI R               H++  ++            LL++  G+G   L LA+ 
Sbjct: 88  DHRALIPRPE-----------TEHLVHLLVDKWFPKSEPPHRLLDVGTGSGCIGLSLAKA 136

Query: 231 --FDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                VL V+I++ ++E AR N     +N  K+
Sbjct: 137 WPAAEVLLVDISEDALELARLNAGRLGLNGQKV 169


>gi|170695332|ref|ZP_02886478.1| ribosomal protein L11 methyltransferase [Burkholderia graminis
           C4D1M]
 gi|170139732|gb|EDT07914.1| ribosomal protein L11 methyltransferase [Burkholderia graminis
           C4D1M]
          Length = 300

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LA+      V  ++I   +VE+AR+N   N  
Sbjct: 156 MEWLEQSVKPGQS-VLDYGCGSGILAI-LAKKCGANPVYGIDIDPQAVESARHNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|148270920|ref|YP_001245380.1| methyltransferase type 12 [Thermotoga petrophila RKU-1]
 gi|147736464|gb|ABQ47804.1| Methyltransferase type 12 [Thermotoga petrophila RKU-1]
          Length = 266

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +L         +L++ CG G F++ +A+    V+ ++++   +E AR       V  V 
Sbjct: 42  KILENFHVRGKKVLDVACGEGTFAVEIAKQGFEVVGIDLSPEMLEFARKRAKEESVP-VV 100

Query: 261 IVRMSSKEF 269
            ++   +E 
Sbjct: 101 FLKKDMREL 109


>gi|119898910|ref|YP_934123.1| putative methyltransferase [Azoarcus sp. BH72]
 gi|119671323|emb|CAL95236.1| putative methyltransferase [Azoarcus sp. BH72]
          Length = 285

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSV 244
            QP   I   +L+ +          +L++ CG G  ++ +AR      R   ++++ P +
Sbjct: 35  FQP---IADLLLDTLADTPDAA---VLDVGCGAGATTVDIARRVAPHGRCTGIDVSAPMI 88

Query: 245 EAARYNIAANHVNNVKIVRMSSK--EFTQA 272
            AAR   A +  +    V   ++  +F  A
Sbjct: 89  TAARARAAQHGAS-ADFVCADAQAHDFGPA 117


>gi|115525551|ref|YP_782462.1| hypothetical protein RPE_3552 [Rhodopseudomonas palustris BisA53]
 gi|115519498|gb|ABJ07482.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 212

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 42/133 (31%), Gaps = 10/133 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
                       ++L CG G   +V A   F   + VE A    E A  N+AA+    ++
Sbjct: 67  AFMRLAPCDHRFIDLGCGKGRMLIVAAELGFASCIGVEFADELAELAAKNVAASGFKTIE 126

Query: 261 IVRMSSK--EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-----LDDATVGMVQ 313
           IV   +    F         FN      +   R        PR+       +     +  
Sbjct: 127 IVHGDAGAYAFGDDPFVLYMFNPFSKQVMECVRDN--LAKLPRANYSIIYKNARERQLFD 184

Query: 314 AYPHILYISCNPD 326
           A P + Y+   P 
Sbjct: 185 AMPTLRYVGSPPA 197


>gi|322376393|ref|ZP_08050886.1| methyltransferase domain protein [Streptococcus sp. M334]
 gi|321282200|gb|EFX59207.1| methyltransferase domain protein [Streptococcus sp. M334]
          Length = 196

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 20/110 (18%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
                +L++ CG G   L LA+ +  +   V+I   +++ AR N   N V          
Sbjct: 56  NQGETVLDVGCGYGTLGLSLAKAYGVQATMVDINNRALDLARQNAERNKVEATIFQSNIY 115

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           ++                      +F  +  +PP          +++   
Sbjct: 116 EQV-------------------EGKFDHVISNPPIRAGKQVVHEIIEKSK 146


>gi|313625354|gb|EFR95147.1| methyltransferase [Listeria innocua FSL J1-023]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 19/105 (18%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  +
Sbjct: 61  GKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 120

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                            ++ +  ++ I  +PP          +++
Sbjct: 121 -----------------NVTANDYQAIISNPPIRAGKKVVHAILE 148


>gi|313675595|ref|YP_004053591.1| protein-(glutamine-n5) methyltransferase, release factor-specific
           [Marivirga tractuosa DSM 4126]
 gi|312942293|gb|ADR21483.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Marivirga tractuosa DSM 4126]
          Length = 281

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 190 PNAGI------NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR--VLAVEIA 240
            N  +         ++  +L     +    ++++  G+G   + +A+      V AV+I+
Sbjct: 87  VNPNVLIPRRETEELVHLILENHPDLSEQMVVDIGTGSGIIPITIAKERKHCEVYAVDIS 146

Query: 241 KPSVEAARYNIAANHVNNVKIVRMS 265
             ++  A+ N   NH  N+  ++  
Sbjct: 147 SSALATAKRNAQLNHA-NINFIQAD 170


>gi|313199799|ref|YP_004038457.1| 50S ribosomal protein L11 methyltransferase [Methylovorus sp.
           MP688]
 gi|312439115|gb|ADQ83221.1| ribosomal protein L11 methyltransferase [Methylovorus sp. MP688]
          Length = 295

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
             H+    LA        +L+  CG+G  ++  ++    +V+ V+I   +++++ +N   
Sbjct: 149 TTHLCLAWLADHVRKDLTVLDYGCGSGILAIAASKLGAGKVVGVDIDPQAIQSSEFNAEN 208

Query: 254 NHV 256
           N V
Sbjct: 209 NGV 211


>gi|302775726|ref|XP_002971280.1| hypothetical protein SELMODRAFT_95290 [Selaginella moellendorffii]
 gi|300161262|gb|EFJ27878.1| hypothetical protein SELMODRAFT_95290 [Selaginella moellendorffii]
          Length = 205

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           E  +      +          A +     +++ + G G  ++  A   + V+A++     
Sbjct: 24  EEGWFSVTPEVIAK-----HQAMRCSSPVVIDAFAGVGGNTIQFALRSEHVIAIDKDPMK 78

Query: 244 VEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF 279
           +  AR+N     V++ +  V     +   +++ +  F
Sbjct: 79  IAYARHNAEIYGVSHRIDFVVGDFFQLAPSLKADVIF 115


>gi|257467858|ref|ZP_05631954.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|317062147|ref|ZP_07926632.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
 gi|313687823|gb|EFS24658.1| methyltransferase [Fusobacterium ulcerans ATCC 49185]
          Length = 372

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  ++ L +      +   +I++ ++E A+ N   N + NVK ++    
Sbjct: 202 APKVLDIGTGSGAIAISLGKECAHSDITGADISEGALEVAKANGELNKIENVKFIKSDVF 261

Query: 268 EFTQAMRREREFNRLKDIDIHSYR--FKTIFVDPPRSGLDD 306
              + M+ +   +    I +  Y      +    P S L D
Sbjct: 262 SSFKDMKFDLIVSNPPYIPLEEYNELMPEVLNYEPSSALTD 302


>gi|219851893|ref|YP_002466325.1| MCP methyltransferase, CheR-type [Methanosphaerula palustris E1-9c]
 gi|219546152|gb|ACL16602.1| MCP methyltransferase, CheR-type [Methanosphaerula palustris E1-9c]
          Length = 274

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANH 255
           +  ++ A  G    +L++ CG+G+ SL+LA+      ++  ++   PS+E AR  +   H
Sbjct: 30  VRLLVDAGIGPGMRVLDVGCGSGDVSLLLAKLVGKDGKITGIDRDGPSLEIARERVRKLH 89

Query: 256 VNNVKIVRMS 265
           ++N+  ++  
Sbjct: 90  LSNITFIKGD 99


>gi|254303802|ref|ZP_04971160.1| possible methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323994|gb|EDK89244.1| possible methyltransferase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 408

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 44/376 (11%), Positives = 114/376 (30%), Gaps = 60/376 (15%)

Query: 16  EKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDY 75
           EK + L ++    Q                +  F    +G+    I+     K    I  
Sbjct: 2   EKENILSELRKNIQEDKFI-----------KIVFSDRQNGEFNKIIIKSLSLKNGKNIQI 50

Query: 76  FMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA 135
                       IE+     +E +L+  +     +  Q +   ++ I  +          
Sbjct: 51  ESFKDNKAFHKNIELDNFQEIEDILKGYMENFKQILLQIENLDISFIKKKESFTKKENKN 110

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGIN 195
             +++ +   K +  ++   +K       D++ E   ++    I +   N F Q N    
Sbjct: 111 NLIKNYIEHNKKKQYILNEGDKI------DFLIELGLMSTEGKILKSSYNKFRQIN---- 160

Query: 196 VHMLEWVLAATKGIQG--------DLLELYCGNGNFSLVLARHFDR--------VLAVEI 239
              LE++    + ++         ++L+  CG    +  L  +           ++ +++
Sbjct: 161 -KYLEFIDDVIEELKSKKLIDNHINVLDFGCGKSYLTFALYYYLKHYRKDLSFSIVGLDL 219

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K  +E         +  N++ +  + K++ +A   +  F+     +   Y  +      
Sbjct: 220 KKDVIEFCNKLAQKLNYENLEFLNGNIKDYDRAKEVDLVFSLHACNNATDYSLEKALSLN 279

Query: 300 PRSG-----LDDATVGMVQAYP--------HIL----YISCNPDSLC----RDLSILSTT 338
            ++              +Q            I+     +     +L     R L++    
Sbjct: 280 AKAILAVPCCHHEFFEKIQKNKNSEFYNTLKIMADNGVVLDKFATLATDSFRSLALELCG 339

Query: 339 HTIERLALFDQFPYTR 354
           +  + +   D   +T 
Sbjct: 340 YKTKMIEFIDM-EHTP 354


>gi|33239874|ref|NP_874816.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237400|gb|AAP99468.1| tRNA and rRNA cytosine-C5-methylase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 438

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 50/151 (33%), Gaps = 20/151 (13%)

Query: 193 GINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAAR 248
            +     +WV+   +   G++ L+     G  +  LA        + AV+ +   ++   
Sbjct: 240 SVQDRSAQWVVPLLEPRSGEVVLDACSAPGGKTTHLAELMNDIGEIWAVDRSPKRLQKVS 299

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR------- 301
            N A    + +K +   +    +     + +     +D+      T+  +P         
Sbjct: 300 LNAARLGHHCIKFLSADATNLIELKPSWKGYFNKILLDVPCSGLGTLARNPDARWRMSPS 359

Query: 302 ---------SGLDDATVGMVQAYPHILYISC 323
                      L +  + +++    I+Y +C
Sbjct: 360 QIEGLIQLQFNLLEGILPLLKPGGRIVYSTC 390


>gi|330889823|gb|EGH22484.1| methyltransferase [Pseudomonas syringae pv. mori str. 301020]
          Length = 320

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 37/246 (15%)

Query: 86  LMIEMMATIRLEPLLRAKLFQ--------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137
           L   ++A +   P    +LF         ++++T    Q +V +   +   +       +
Sbjct: 9   LQQHLLAALNNVPTETRRLFHGRGRVWPGLEHITVDWMQGVVLVSLFKEPLENELAALTQ 68

Query: 138 LRDAL---------HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           L + L          A    +Q       T   L  + VDE + +    L Y+       
Sbjct: 69  LLNELIETPQWQQSQAHTLLLQHRYLPQSTTQWLTGEVVDEWV-ITENGLRYKIDFGK-K 126

Query: 189 QPNAGINVHML---EWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSV 244
           Q N+G+ + M    EWV A  KG    +L L+     FS+  LA   D V+ +++A+ ++
Sbjct: 127 Q-NSGLFLDMRYGREWVQAQAKG--KRILNLFAYTCGFSVAALAGGADHVVNLDMARAAL 183

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
              R N   N   ++  V     +  ++  +             S  +  I +DPP    
Sbjct: 184 NRGRENHRLND-QDLSRVTFLGHDLFKSWAKVT----------RSGPYDLIIIDPPSFQK 232

Query: 305 DDATVG 310
               + 
Sbjct: 233 GSFMLD 238


>gi|325971907|ref|YP_004248098.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Spirochaeta sp. Buddy]
 gi|324027145|gb|ADY13904.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Spirochaeta sp. Buddy]
          Length = 286

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 25/155 (16%)

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY-VDERLTV 173
           DQA   L + ++L DA  +    LR    + K    ++GR         RD+ VDER+ +
Sbjct: 40  DQAKQILFFDKVLTDAQLDSLTSLRKVRLSHKPMAYILGRRE----FYGRDFQVDERVLI 95

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ--GDLLELYCGNGNFSLVLA-RH 230
                                   ++E VLA  K       ++++  G+G   + LA   
Sbjct: 96  PRSD-----------------TETLIEAVLAFAKNKTDTPSIIDVCTGSGCIGITLALEL 138

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              V   ++++ ++  AR N        +  +   
Sbjct: 139 GSAVTLTDLSEGALAVARENARRLVSRPLTFLHGD 173


>gi|298251102|ref|ZP_06974906.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297549106|gb|EFH82973.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 267

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 194 INVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVL--AVEIAKPSVEAARYN 250
               ++E + + T    G  +LE  CG G  ++ LA++    L  +V+I++ SV  AR  
Sbjct: 20  QASTLVELLHSDTSYPAGSRVLEAGCGVGAQTVTLAQNSPNALITSVDISEVSVREARRK 79

Query: 251 IAANHVNNVKIVRMS 265
           +AA  + NV   +  
Sbjct: 80  VAAAGLTNVHFHQAD 94


>gi|294010050|ref|YP_003543510.1| methylase of polypeptide chain release factors [Sphingobium
           japonicum UT26S]
 gi|292673380|dbj|BAI94898.1| methylase of polypeptide chain release factors [Sphingobium
           japonicum UT26S]
          Length = 275

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 54/163 (33%), Gaps = 35/163 (21%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYC 218
           I   RD+    L V    LI R   +S           ++E  L          +L+L  
Sbjct: 69  ITGTRDFWTISLHVTPDVLIPR--PDS---------ETLIEAALDHFGPRSPARILDL-- 115

Query: 219 GNGNFSLVLARHF----DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
           G G+ +L+LA            V+I+  +V  A+ N     +      R+   ++ + M 
Sbjct: 116 GTGSGALLLAALSQWPQATGTGVDISPAAVAVAQGNADRLGLGGRANFRL--GDWAEGM- 172

Query: 275 REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                            F  I V+PP    D A  G V   P 
Sbjct: 173 --------------GGPFDLILVNPPYIARDAALAGDVLHEPE 201


>gi|262194258|ref|YP_003265467.1| methyltransferase type 12 [Haliangium ochraceum DSM 14365]
 gi|262077605|gb|ACY13574.1| Methyltransferase type 12 [Haliangium ochraceum DSM 14365]
          Length = 200

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +L   + A     G LLE+ CG G+ +  LA+    VLAV+IA  ++E AR 
Sbjct: 23  LLVQAVEAGHLPAGRLLEIGCGTGDNARFLAKSGWSVLAVDIAPTAIEKARA 74


>gi|227824933|ref|ZP_03989765.1| SAM-dependent methyltransferase [Acidaminococcus sp. D21]
 gi|226905432|gb|EEH91350.1| SAM-dependent methyltransferase [Acidaminococcus sp. D21]
          Length = 408

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 28/142 (19%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVN 257
                 A       +L+ +   G F+L  AR     V AV+I+  +++ A+ NI  NH+ 
Sbjct: 222 YNRQAVARIAKGKHVLDCFTHTGAFALNAARGGAASVTAVDISGEALKTAQQNILRNHLV 281

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF-KTIFVDPPR------------SGL 304
           +V              R    F  L ++    +     I +DPP              G 
Sbjct: 282 DV-----------VTTREANVFELLTELKAQGHAPYDFIILDPPAFTKSSSTVRSAFRGY 330

Query: 305 DDATVGMVQAYPHILYI---SC 323
            +  +  ++  P   Y+   SC
Sbjct: 331 KEINLKAMKLLPRGGYLATCSC 352


>gi|226304620|ref|YP_002764578.1| hypothetical protein RER_11310 [Rhodococcus erythropolis PR4]
 gi|226183735|dbj|BAH31839.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 210

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           N  ++E+  A      G  L+L CG G  +L LA     V  ++ +  ++E A    A 
Sbjct: 22  NELLVEYATALPH---GQALDLACGEGRNALWLATRGWEVTGIDYSAVAIEKACTIAAR 77


>gi|218461071|ref|ZP_03501162.1| putative methyltransferase protein [Rhizobium etli Kim 5]
          Length = 160

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +AA  G    +L++ CG G  +   AR       + V+++   +E AR   AA  + NV 
Sbjct: 22  IAAGVGAGDRVLDIGCGAGQTTREAARAATQGEAVGVDVSAEMLEVARRRSAAEGLRNVV 81

Query: 261 IVRMSS 266
             +  +
Sbjct: 82  FEQADA 87


>gi|223937012|ref|ZP_03628920.1| Protein of unknown function methylase putative [bacterium Ellin514]
 gi|223894293|gb|EEF60746.1| Protein of unknown function methylase putative [bacterium Ellin514]
          Length = 198

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 209 IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +   +LEL+ G G  SL  L+R   +V+ VE+A+   +A R+N     +           
Sbjct: 41  VGARVLELFAGTGALSLECLSRGAAQVVCVEMAQRHAQAIRHNAGKVGIG---------P 91

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           E  +  R +  FN L  +     +F+ +  DPP
Sbjct: 92  EVLEV-RVQDVFNALPQLAAAGRQFEVVIADPP 123


>gi|170751715|ref|YP_001757975.1| methyltransferase small [Methylobacterium radiotolerans JCM 2831]
 gi|170658237|gb|ACB27292.1| methyltransferase small [Methylobacterium radiotolerans JCM 2831]
          Length = 252

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 37/117 (31%), Gaps = 14/117 (11%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARY 249
           AG +  +L  +LA   G    L ++  G G   L  A      R   VE        AR 
Sbjct: 29  AGTDAVLLARLLAPRAG--DRLCDVGAGTGAVGLACAALAPGLRPTLVERDPALAGQARA 86

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           N   N ++     R+   +   +    R    L D       F  +  +PP      
Sbjct: 87  NATLNGID----ARVLVADVLASAAERRAAGLLPD------SFDVVLTNPPFFAAGA 133


>gi|217960331|ref|YP_002338891.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus AH187]
 gi|217066398|gb|ACJ80648.1| methyltransferase, UbiE/COQ5 family [Bacillus cereus AH187]
          Length = 261

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F+ V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFNEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|20090998|ref|NP_617073.1| hypothetical protein MA2155 [Methanosarcina acetivorans C2A]
 gi|19916086|gb|AAM05553.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 256

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            +L+   G G  S++LA     V+ VE A   ++ A  N     + +V  V    
Sbjct: 46  RVLDAGSGTGFLSMLLATMGHSVVGVERAPNMLKIASENAVNRGL-HVDFVLGDV 99


>gi|322385960|ref|ZP_08059600.1| rRNA methylase [Streptococcus cristatus ATCC 51100]
 gi|321269943|gb|EFX52863.1| rRNA methylase [Streptococcus cristatus ATCC 51100]
          Length = 182

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDVVVDATMGNGHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +N +++    +   Q
Sbjct: 66  DNAQLILAGHETLDQ 80


>gi|312218222|emb|CBX98168.1| similar to RNA methylase family protein [Leptosphaeria maculans]
          Length = 263

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 4/114 (3%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEI 239
            E+++       I   +   +  +       +++ + G G  ++ LAR     RV  +E 
Sbjct: 44  TEDAWFGVTPEPIANKIAAHISESAPKTSNTIIDAFAGVGGNAIALARSGRWDRVFGIEK 103

Query: 240 AKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
              +++ A++N     V      +     E  +  +                 F
Sbjct: 104 DAKTLKCAKHNAEIYGVGGKIFWLEGDCFEVMRRFKGTEGLVVFASPPWGGALF 157


>gi|307297723|ref|ZP_07577529.1| PUA domain containing protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916983|gb|EFN47365.1| PUA domain containing protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 392

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 16/98 (16%)

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEF 269
           ++L+++   GNFS   L++   R   V+ ++ ++  AR     N  ++  + VR ++   
Sbjct: 217 NVLDVFSYTGNFSFHCLSQGASRATLVDSSERALSVARETAEINGFISRCEFVRANA--- 273

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                    F+ L++  +  +    + VDPP      +
Sbjct: 274 ---------FDYLREESLAGH--SLVIVDPPAMAKSPS 300


>gi|302756219|ref|XP_002961533.1| hypothetical protein SELMODRAFT_76241 [Selaginella moellendorffii]
 gi|300170192|gb|EFJ36793.1| hypothetical protein SELMODRAFT_76241 [Selaginella moellendorffii]
          Length = 205

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           E  +      +          A +     +++ + G G  ++  A   + V+A++     
Sbjct: 22  EEGWFSVTPEVIAK-----HQAMRCSSPVVIDAFAGVGGNTIQFALRSEHVIAIDKDPMK 76

Query: 244 VEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREF 279
           +  AR+N     V++ +  V     +   +++ +  F
Sbjct: 77  IAYARHNAEIYGVSHRIDFVVGDFFQLAPSLKADVIF 113


>gi|260771641|ref|ZP_05880561.1| ribosomal RNA small subunit methyltransferase D [Vibrio
           metschnikovii CIP 69.14]
 gi|260613418|gb|EEX38617.1| ribosomal RNA small subunit methyltransferase D [Vibrio
           metschnikovii CIP 69.14]
          Length = 201

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 22/121 (18%)

Query: 210 QGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +   L+L+ G+G+     A R  + V  +E+   +    + NIA    NN+  V   +  
Sbjct: 60  KAKCLDLFAGSGSLGFECASRQANLVTMLELNGAAYHQLKSNIARLQANNINAVHGDT-- 117

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQ-----AYPHILYIS 322
                        L+ +   +  +  +F+DPP   GL +  V +++     A   I+YI 
Sbjct: 118 -------------LQYLKQSASAYDVVFIDPPFHQGLINHVVPLLESNGWLAEQAIIYIE 164

Query: 323 C 323
           C
Sbjct: 165 C 165


>gi|254773433|ref|ZP_05214949.1| methylase, putative [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 220

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 19/90 (21%)

Query: 212 DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L  G+G  ++  A      V A +    +V+ AR N A   V+             
Sbjct: 31  RVLDLCTGSGFVAIAAAEMGCASVTAFDKCPHAVQCARENAALAGVD------------- 77

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                 RE + L  +D     F  +  +PP
Sbjct: 78  ---VDVREGSWLAAVDCAP--FDVVVSNPP 102


>gi|229819783|ref|YP_002881309.1| modification methylase, HemK family [Beutenbergia cavernae DSM
           12333]
 gi|229565696|gb|ACQ79547.1| modification methylase, HemK family [Beutenbergia cavernae DSM
           12333]
          Length = 296

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 16/110 (14%)

Query: 194 INVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYN 250
           +    ++     A    +  +++L CG G  +L +       RV+AV++A  +V   R N
Sbjct: 107 VAQVAIDEAERLAVDDARPLVVDLCCGAGGIALAVDTEVPASRVVAVDLAPEAVALTRRN 166

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            AA     ++I     ++             L D+D        +  +PP
Sbjct: 167 DAAVGTRTMRIEHGDVRD----------SELLADLD---GTVDVVVSNPP 203


>gi|254482706|ref|ZP_05095944.1| Methyltransferase domain family protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037065|gb|EEB77734.1| Methyltransferase domain family protein [marine gamma
           proteobacterium HTCC2148]
          Length = 333

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 180 YRQIENSFTQPNAGINVH------MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR 233
           +R   + F Q    I  +      + E +  A    +   LE+  G+G+F + LA  F+R
Sbjct: 137 FRHNADKFRQQQDLIASYEQYAGTVAEVLRDAPITQRLLALEVGPGDGSFLMELAPRFER 196

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           V+AV+I    +E A+  +    ++N++ +   
Sbjct: 197 VVAVDIEAAMLEQAQARVNKAKLSNIEFIHGD 228


>gi|196228304|ref|ZP_03127171.1| SAM-dependent methyltransferase-like protein [Chthoniobacter flavus
           Ellin428]
 gi|196227707|gb|EDY22210.1| SAM-dependent methyltransferase-like protein [Chthoniobacter flavus
           Ellin428]
          Length = 326

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK--IVR 263
            +     LL  +    +FS+  A      ++V+++K S++  R N A N +++ K     
Sbjct: 153 HREEPKRLLNTFAYTCSFSVTAALVGAETVSVDLSKKSLDRGRENFALNGLDDSKHRFFA 212

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +    + R+ E            +F  I +DPP
Sbjct: 213 DDVLDVLPRLARKNE------------KFDIIILDPP 237


>gi|56553469|gb|AAV97875.1| OnnG [symbiont bacterium of Theonella swinhoei]
          Length = 321

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                + + +L       G +L++ CG G  +  LA  +  + V A+ I++  +E+ R N
Sbjct: 106 AAAEKLQDMLLEMIPEKTGRILDVACGMGASTRRLAELYSPENVWAINISEKQIESTREN 165

Query: 251 IAANHVNNVKIVRMSSKEFT 270
                     +  MS+ E T
Sbjct: 166 AK-----GCHVQVMSAVEMT 180


>gi|110635204|ref|YP_675412.1| HemK family modification methylase [Mesorhizobium sp. BNC1]
 gi|110286188|gb|ABG64247.1| modification methylase, HemK family [Chelativorans sp. BNC1]
          Length = 234

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 16/91 (17%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEF 269
           ++++ CG+GN +L +A      R+ A ++ + +V  AR N      ++ VK+V+      
Sbjct: 61  VIDMCCGSGNLALGIAAAVPAARLWASDLTESTVSLARRNAERLGLLDRVKVVQGD---- 116

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                    F+ L D  +   R   +  +PP
Sbjct: 117 --------LFSGLADEGLEG-RVDFVVSNPP 138


>gi|317122279|ref|YP_004102282.1| SAM-dependent methyltransferase [Thermaerobacter marianensis DSM
           12885]
 gi|315592259|gb|ADU51555.1| SAM-dependent methyltransferase [Thermaerobacter marianensis DSM
           12885]
          Length = 442

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 41/138 (29%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAA------ 253
                       +L+ +C  G F+   LA     V+AV+I   +++ AR N+        
Sbjct: 232 RAALRRYVAGARVLDAFCHTGAFTCHALAYGAREVVAVDIHDQALQLARENVERVRRALA 291

Query: 254 ----------------------NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
                                      V   + ++ +F +A   E +            R
Sbjct: 292 ATGAPAGAGVPGRPGGNAPGHGAGTAAVTFHQANAFDFLRARAAEAD------------R 339

Query: 292 FKTIFVDPPRSGLDDATV 309
           +  I +DPP    +   +
Sbjct: 340 YDVIILDPPAFAKNRQAL 357


>gi|312793762|ref|YP_004026685.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180902|gb|ADQ41072.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 304

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN 257
            +        D+L++  G+G  ++  A+ F   RVLAV+I + +V+ A  N   N V 
Sbjct: 161 AIQEYVKPGMDVLDVGTGSGILAIA-AKKFLAKRVLAVDIDEVAVKVAEENARLNGVE 217


>gi|300721684|ref|YP_003710960.1| putative methyltransferase [Xenorhabdus nematophila ATCC 19061]
 gi|297628177|emb|CBJ88732.1| putative methyltransferase with SAM-dependent methyltransferase
           domain [Xenorhabdus nematophila ATCC 19061]
          Length = 196

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 22/120 (18%)

Query: 209 IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +   L+ + G+G      L+R+      +E  +   +    N+A  +  N  +V+ ++ 
Sbjct: 53  QEARCLDCFSGSGALGFEALSRYASHATLIEYDRNVAKQLSANLALLNAENADVVQENA- 111

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI-----LYI 321
                         L+ ++     F  +F+DPP R G+   T+ +++    +     +Y+
Sbjct: 112 --------------LQYLNNPGTPFDVVFLDPPFRKGMLTETIHLLENNGWLAEESWIYV 157


>gi|296163290|ref|ZP_06846052.1| glycosyl transferase family 2 [Burkholderia sp. Ch1-1]
 gi|295886472|gb|EFG66328.1| glycosyl transferase family 2 [Burkholderia sp. Ch1-1]
          Length = 1123

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            HM  +  AA      D+L++  G G  S +LAR    V+ V+I+  ++  AR +     
Sbjct: 19  EHMHRYECAADLVSAKDVLDIASGEGYGSAILARVARSVIGVDISDEAIAHARGSYRN-- 76

Query: 256 VNNVKIVRMSSKEF 269
             N++    S+ + 
Sbjct: 77  -VNLEFRAGSASDI 89


>gi|152992387|ref|YP_001358108.1| hypothetical protein SUN_0793 [Sulfurovum sp. NBC37-1]
 gi|151424248|dbj|BAF71751.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 459

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                +L+L CG G   LV A       RV  V+I    VE AR +      +NV++
Sbjct: 65  PEGASILDLGCGAGVDLLVAATLVGESGRVTGVDITPKMVERAREHAKEAGFDNVEV 121


>gi|145219132|ref|YP_001129841.1| Mg-protoporphyrin IX methyl transferase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205296|gb|ABP36339.1| magnesium protoporphyrin O-methyltransferase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 232

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-V 259
           W+          +L+  CG G F++ +A+   RV A +IA   VE  + +  A  V + +
Sbjct: 57  WIEQLKLPKDSLILDAGCGTGLFTIRIAKAGYRVKAADIASQMVEKTKTDATAAGVADKI 116

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           +    S +  + +      F+ L       +
Sbjct: 117 EFEVNSIESVSGSFDAVVCFDVLIHYPSEGF 147


>gi|304389329|ref|ZP_07371294.1| rRNA (guanine-N(2)-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327447|gb|EFL94680.1| rRNA (guanine-N(2)-)-methyltransferase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 186

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI- 251
           +   M   +L +       +L+L+ G+G   L  L+R     + V+ A  + +  R NI 
Sbjct: 28  VREAMFSHLLCSGFPQGATVLDLFAGSGALGLEALSRGGASAVFVDAAGSAAKVLRANID 87

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A  + + V+++   + +F          + LK  D     F  IF+DPP +        +
Sbjct: 88  ALRYRDRVRVLVKDAAKFV---------SELKPTD----CFDLIFLDPPYALAPYVLCEI 134

Query: 312 VQA 314
           +  
Sbjct: 135 LAG 137


>gi|302529500|ref|ZP_07281842.1| ElmF protein [Streptomyces sp. AA4]
 gi|302438395|gb|EFL10211.1| ElmF protein [Streptomyces sp. AA4]
          Length = 376

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 21/107 (19%)

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
             L+ V        G   + +L  G G  + +LAR     V+A ++   +V  AR N+  
Sbjct: 180 EYLDLVAQEPLPGNGSPVVFDLGTGTGVLAAILARRGAAEVVATDLNPLAVRCARDNLRR 239

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +++   VR                    D+     R   +  +PP
Sbjct: 240 LGLSDRVQVRE------------------TDLWPSDRRADLVVCNPP 268


>gi|217969846|ref|YP_002355080.1| modification methylase, HemK family [Thauera sp. MZ1T]
 gi|217507173|gb|ACK54184.1| modification methylase, HemK family [Thauera sp. MZ1T]
          Length = 289

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/197 (19%), Positives = 68/197 (34%), Gaps = 42/197 (21%)

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
           +V     +L  + W E       AL  R+     +     T+    R+++     V    
Sbjct: 44  LVAWPEQKLAAEDWAEYR-----ALVERRAAGVPVAYLTGTREFYGREFL-----VTPAV 93

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARH--FDRV 234
           LI R                ++E  LA   G +G  +L+L  G+G  ++ LA       V
Sbjct: 94  LIPRPE-----------TELLVELALAHFPGRRGLRVLDLGTGSGALAVTLALELEAAEV 142

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
           +A++ ++ ++  A  N A    + V  V+               F  L D       F+ 
Sbjct: 143 VALDRSREALWVAMANAARLGAS-VSFVQSD------------WFGALGD-----EHFEL 184

Query: 295 IFVDPPRSGLDDATVGM 311
           I  +PP     D  +  
Sbjct: 185 IVSNPPYVAAGDPHLEQ 201


>gi|163800825|ref|ZP_02194725.1| putative SAM-dependent methyltransferase [Vibrio sp. AND4]
 gi|159175174|gb|EDP59971.1| putative SAM-dependent methyltransferase [Vibrio sp. AND4]
          Length = 397

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 62/189 (32%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 163 KEGLEETTGVLHGEEPPKSVVIEENGVKISVD-------IVSGHKTGFYLDQRDS----- 210

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +             +L  +   G F L  L     RV+  ++++P+++ A++N
Sbjct: 211 RQQAMKYV---------KDKTVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKFAESKAQLN 313

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 314 GACRGYKDI 322


>gi|149926678|ref|ZP_01914938.1| protein-L-isoaspartate O-methyltransferase, putative [Limnobacter
           sp. MED105]
 gi|149824607|gb|EDM83823.1| protein-L-isoaspartate O-methyltransferase, putative [Limnobacter
           sp. MED105]
          Length = 222

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +     G    +LE+  G G  + ++A+    V  +E+     E AR N+  N +  VK+
Sbjct: 75  LQELELGTHEKVLEIGTGTGYMAALMAQQCAHVTTIELNPAVAELARSNLKKNGITRVKV 134

Query: 262 VRMSSKEFTQAM 273
           +     +    +
Sbjct: 135 LEGCGFQLAPTL 146


>gi|86141310|ref|ZP_01059856.1| hypothetical protein MED217_04812 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831869|gb|EAQ50324.1| hypothetical protein MED217_04812 [Leeuwenhoekiella blandensis
           MED217]
          Length = 249

 Score = 45.8 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + +          +L+L CG G  +  +A    +++ ++ ++  ++      A     N+
Sbjct: 20  DLISMLNPQKDERILDLGCGTGELTAAIAESGAQLVGIDASQEMID-----AAKAQFKNI 74

Query: 260 KIVRMSSKEFTQAMRREREF 279
           + +    + F    R +  F
Sbjct: 75  EFITARGESFIDQERYDAIF 94


>gi|323343507|ref|ZP_08083734.1| protein-(glutamine-N5) methyltransferase [Prevotella oralis ATCC
           33269]
 gi|323095326|gb|EFZ37900.1| protein-(glutamine-N5) methyltransferase [Prevotella oralis ATCC
           33269]
          Length = 276

 Score = 45.8 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 20/108 (18%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIA 252
              +  W +         +L++ CG+G  ++ LA   H   V+A +I+  ++  A  N  
Sbjct: 94  TAELCAW-ITHETPEDATVLDVGCGSGCIAVTLALNIHGAHVVAWDISDEALHIAESNAQ 152

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           A H   V IVR  +               +   D+  +    +  +PP
Sbjct: 153 ALHAR-VDIVRQDA--------------LIPPADVEKW--DVVVSNPP 183


>gi|298241807|ref|ZP_06965614.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297554861|gb|EFH88725.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 273

 Score = 45.8 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266
            Q  +L++  G G  ++  A+ F  +VL ++    +V  A     A  V + V   +  +
Sbjct: 56  PQQRVLDIASGQGKSAITFAQRFGCQVLGIDYGHEAVHKAMQAAKAAGVAHLVSFQQGDA 115

Query: 267 KEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           +          A+  E  F    D    +  F  +     R GL D
Sbjct: 116 ERLPVPECTFDAVMCECAFCTFPDKPTAAAEFMRVLKPGGRVGLSD 161


>gi|281425844|ref|ZP_06256757.1| methyltransferase [Prevotella oris F0302]
 gi|299140704|ref|ZP_07033842.1| conserved hypothetical protein [Prevotella oris C735]
 gi|281400105|gb|EFB30936.1| methyltransferase [Prevotella oris F0302]
 gi|298577670|gb|EFI49538.1| conserved hypothetical protein [Prevotella oris C735]
          Length = 393

 Score = 45.8 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 20/126 (15%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSV 244
            F   +   N ++LE            +L ++C  G FS+   R     V +V+ +  +V
Sbjct: 203 GFF-VDQRENRNLLE-----HYAKGKSVLNMFCYTGGFSVYAMRGQAKLVHSVDSSAKAV 256

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E    NIA N  ++++        F             K +D +  ++  I +DPP    
Sbjct: 257 ELTNRNIALNFPDDLRHEAFCEDAF-------------KYLDNNDNKYDLIILDPPAFAK 303

Query: 305 DDATVG 310
             A + 
Sbjct: 304 HRAALR 309


>gi|257093752|ref|YP_003167393.1| type 11 methyltransferase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046276|gb|ACV35464.1| Methyltransferase type 11 [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 267

 Score = 45.8 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 193 GINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                +L+ +L      + G +L+  CG G   L LAR   R+   +I++ S+  A    
Sbjct: 35  AAQGKLLDDLLREHAAREVGSILDCTCGIGTQCLGLARLGYRLTGTDISRKSLARAEREA 94

Query: 252 AANHVNNVKIVRMSSKEFTQA 272
           A   +  +  +    ++  + 
Sbjct: 95  ARLAMQ-INFLAADVRKLDEV 114


>gi|261820752|ref|YP_003258858.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Pectobacterium wasabiae WPP163]
 gi|261604765|gb|ACX87251.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Pectobacterium wasabiae WPP163]
          Length = 310

 Score = 45.8 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 8/146 (5%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSS 266
              +L+L  G+G  ++  A+ F    V AV+I+  ++     NI  + +   V  +R   
Sbjct: 133 PNHILDLCTGSGCIAIACAQAFPEAEVDAVDISSDALAVTEQNIQQHGLEYRVTPIRSDL 192

Query: 267 KEFTQAMRREREFNRLKDIDIHSY-RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNP 325
                A+R +        +D          F   P  GL       +     IL  +C P
Sbjct: 193 FRDLPAIRYDLIVTNPPYVDEEDMSDLPQEFRFEPELGLAAG-NDGLDLVRRIL--ACAP 249

Query: 326 DSLCRDLSILSTTHTIERLALFDQFP 351
           D L  D  ++        + L DQ+P
Sbjct: 250 DYLSDDGVLICEVGN-SMVHLIDQYP 274


>gi|145637545|ref|ZP_01793202.1| HemK [Haemophilus influenzae PittHH]
 gi|145269231|gb|EDK09177.1| HemK [Haemophilus influenzae PittHH]
          Length = 292

 Score = 45.8 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 81/248 (32%), Gaps = 58/248 (23%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR- 139
             +   M ++      E      L  + ++T +S   I+        DD   +  +RL+ 
Sbjct: 5   EWLAQAMADLAQKNPTENSKIDVLVLLQHVTGKSRTQILAF------DDTEIDEKVRLKL 58

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
            AL  R+ + + I       I  ++++    L V+  TLI R                ++
Sbjct: 59  TALLDRRLKGEPIAY-----ILGEKEFWSLPLNVSKSTLIPRPD-----------TESLV 102

Query: 200 EWVLA------ATKGIQGDLLELYCGNGNFSLVLARHFD----------RVLAVEIAKPS 243
           E  L               +L+L  G G  +L LA               ++ V++    
Sbjct: 103 EKALQIALEKLEENPPHFHILDLGTGTGAIALALASELAPICQKRHIPLEIIGVDLMPDV 162

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A+ N   N + NV+ ++ S                    D  + +F  I  +PP   
Sbjct: 163 VALAQSNAERNQL-NVQFLQSS------------------WFDNITGKFDLIVSNPPYID 203

Query: 304 LDDATVGM 311
             D  +  
Sbjct: 204 AQDEHLHQ 211


>gi|111222319|ref|YP_713113.1| putative methyltransferase [Frankia alni ACN14a]
 gi|111149851|emb|CAJ61545.1| putative methyltransferase [Frankia alni ACN14a]
          Length = 207

 Score = 45.8 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVK 260
                    G  L+L CG G  ++ LA     V+  + +  +VE A          +   
Sbjct: 26  AAEIDGLAVGRALDLACGEGRNAIHLATLGWHVVGADFSATAVERAGRLAEHAGVADRTT 85

Query: 261 IVRMSS 266
            V   +
Sbjct: 86  FVVADA 91


>gi|332975773|gb|EGK12654.1| ribosomal protein L11 methyltransferase [Desmospora sp. 8437]
          Length = 341

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +L         ++++ CG+G  S+  AR     VLA+++   +VE+   NI  N +   
Sbjct: 197 KLLERQLQPGQKVIDVGCGSGVLSIAAARLGASEVLALDLDPVAVESTSQNIRLNGLEQR 256

Query: 260 KIVR 263
             VR
Sbjct: 257 IAVR 260


>gi|300772331|ref|ZP_07082201.1| hydrogenase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760634|gb|EFK57460.1| hydrogenase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 394

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 71/217 (32%), Gaps = 41/217 (18%)

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDR 164
            Q+    +++ +A++     RLL          L+   H              T   L  
Sbjct: 124 IQVHAAGTENVKAVIIDELTRLLQPKGIYERSDLKSREHEGLPN---------TNGLLSG 174

Query: 165 DYVDERLTVAGRTLIYR--QIEN---SFT--Q-PNAGINVHMLEWVLAATKGIQGDLLEL 216
           +   E + V    + Y+   I+     F   Q  N  +    +             +L+ 
Sbjct: 175 ELPPEFVDVVENGIRYKVNIIDGQKSGFYCDQRENRFLTAQYV---------KDKKVLDC 225

Query: 217 YCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAM 273
           +C +G F+L  + +    V AV+ +  ++E    N+  N  +    + +     +  +  
Sbjct: 226 FCYSGGFTLNSIQQGAAAVTAVDSSALAIETLERNMVVNGFDTSGHQFILSDVNKQLRTF 285

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             E              RF  + +DPP+     +++ 
Sbjct: 286 IEEE------------ARFDVVILDPPKYAPSRSSLE 310


>gi|229197072|ref|ZP_04323809.1| Methyltransferase type 11 [Bacillus cereus m1293]
 gi|228586382|gb|EEK44463.1| Methyltransferase type 11 [Bacillus cereus m1293]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F+ V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFNEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|126657899|ref|ZP_01729052.1| hypothetical protein CY0110_13581 [Cyanothece sp. CCY0110]
 gi|126620839|gb|EAZ91555.1| hypothetical protein CY0110_13581 [Cyanothece sp. CCY0110]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            Q NA     +   VL+       + +L+L CGNG  +  +A     V+ ++ +   V+A
Sbjct: 11  YQENASFVAELGSSVLSLLNPQPDESILDLGCGNGTLTEKIASVAREVIGIDSSPSMVQA 70

Query: 247 ARY---NIAANHVNNVKI 261
            +    N      +++  
Sbjct: 71  TQEKGLNAVVMSADSITY 88


>gi|119510215|ref|ZP_01629353.1| hypothetical protein N9414_10533 [Nodularia spumigena CCY9414]
 gi|119465165|gb|EAW46064.1| hypothetical protein N9414_10533 [Nodularia spumigena CCY9414]
          Length = 441

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 190 PNAGINVHML--EWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVE 245
            ++ +N + L  + V+     +   +L+  CG+G  SL+LA      +++  +I+  SV+
Sbjct: 39  IHSLVNAYYLRNQKVIDTQGKL---ILDAGCGSGYKSLMLAEANPGAKIVGFDISPESVK 95

Query: 246 AARYNIAANHVNNVKIVRMSSKEF 269
            AR  +  +  +N +   ++ +E 
Sbjct: 96  LARERLDYHGFDNAEFHVLALEEL 119


>gi|320178695|gb|EFW53658.1| Ribosomal protein L3 methyltransferase [Shigella boydii ATCC 9905]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|308270845|emb|CBX27455.1| hypothetical protein N47_H22770 [uncultured Desulfobacterium sp.]
          Length = 606

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA-KPSVEAARYNIAANHVNNVK 260
           +     G    +LEL CG G  +  L     +V+AVE + + +V AA        + NV 
Sbjct: 72  LRPFNFGSSHRILELGCGCGAITRYLGETGAKVIAVEGSQRRAVIAAER---CRDLPNVS 128

Query: 261 IVRMSSKEF 269
           I   +  EF
Sbjct: 129 IYCDNVAEF 137


>gi|222096388|ref|YP_002530445.1| methyltransferase [Bacillus cereus Q1]
 gi|221240446|gb|ACM13156.1| methyltransferase [Bacillus cereus Q1]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F+ V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFNEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|145593832|ref|YP_001158129.1| putative methyltransferase [Salinispora tropica CNB-440]
 gi|145303169|gb|ABP53751.1| putative methyltransferase [Salinispora tropica CNB-440]
          Length = 187

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 202 VLAATKGIQG-DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            L A   + G    +LY G+G   L  L+R    VL VE    +    R N+AA      
Sbjct: 36  ALQAAADLDGVRFADLYAGSGAVGLEALSRGAAHVLLVESNPRAARTIRANVAALRAGPA 95

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
              R+ + +    +    E             +  +F DPP S  D+    M+ A
Sbjct: 96  --ARLVAGKVATVLADGPE----------EGPYDVVFADPPYSVSDEEVSSMLGA 138


>gi|71892128|ref|YP_277860.1| N5-glutamine methyltransferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796234|gb|AAZ40985.1| N5-glutamine methyltransferase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 278

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 21/138 (15%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFD 232
             +L  +    +F  P       +++ V    K    ++L+L  G G  +L LA  R   
Sbjct: 77  FWSLDLKVSPGTFI-PRPDTEC-LVKHVFDLLKVSHLNVLDLGTGVGTIALALASERPNW 134

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            +  ++  K ++  A  N    +  NVK +                F  L      + +F
Sbjct: 135 NITGIDCQKKALFLAHKNKLLLNFKNVKFIYGD------------WFKYL-----RNKKF 177

Query: 293 KTIFVDPPRSGLDDATVG 310
             I  +PP    +D+ + 
Sbjct: 178 NLIVSNPPYIDKNDSCLQ 195


>gi|32033662|ref|ZP_00133973.1| COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
           methylase [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|126207773|ref|YP_001052998.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae L20]
 gi|307256313|ref|ZP_07538096.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|166234757|sp|A3MZ07|UBIG_ACTP2 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|126096565|gb|ABN73393.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|306865139|gb|EFM97039.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 234

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 179 IYRQIENSFTQPNAG------INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
            + ++  ++  PN        +N   L+++     G+ G  +L++ CG G  S  +AR  
Sbjct: 11  KFEKMAATWWDPNGSFKPIHLLNPLRLDYIQQKANGLFGKKVLDVGCGGGILSEAMARAG 70

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             V  +++    +E AR +   N ++ +   + + ++F Q
Sbjct: 71  ATVTGIDMTTEPLEVARKHAEENGLS-IDYRQTTIEDFVQ 109


>gi|110640078|ref|YP_680288.1| SAM-dependent methyltransferase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282759|gb|ABG60945.1| SAM-dependent methyltransferase [Cytophaga hutchinsonii ATCC 33406]
          Length = 393

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 19/120 (15%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVL-AVEIAKPSVEAARYNIAAN--HVNNV 259
           L  +      +L  +C  G FS+  A     V+ +V+I+K +V  A  N+  N     + 
Sbjct: 214 LLRSYSKGKKVLNTFCYTGGFSVYAASGGAEVVDSVDISKEAVALAGKNMELNYPGYKHG 273

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
             +     +F                DI    +  I +DPP       A     + Y  I
Sbjct: 274 T-IAADCFDFLG--------------DIEKDYYDIIVLDPPAFAKSAKAVANACRGYKQI 318


>gi|303252523|ref|ZP_07338686.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247272|ref|ZP_07529321.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307260746|ref|ZP_07542435.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302648491|gb|EFL78684.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856245|gb|EFM88399.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306869585|gb|EFN01373.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 234

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 179 IYRQIENSFTQPNAG------INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
            + ++  ++  PN        +N   L+++     G+ G  +L++ CG G  S  +AR  
Sbjct: 11  KFEKMAATWWDPNGSFKPIHLLNPLRLDYIQQKANGLFGKKVLDVGCGGGILSEAMARAG 70

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             V  +++    +E AR +   N ++ +   + + ++F Q
Sbjct: 71  ATVTGIDMTTEPLEVARKHAEENGLS-IDYRQTTIEDFVQ 109


>gi|301620314|ref|XP_002939522.1| PREDICTED: tRNA (guanine-N(1)-)-methyltransferase [Xenopus
           (Silurana) tropicalis]
          Length = 486

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 84/246 (34%), Gaps = 24/246 (9%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
               + E +LRA L +   +TS    + V  I H  L D        +   +  +   I 
Sbjct: 166 YENFKCEEILRAVLPKGQDVTS--GFSRVGHIAHMNLRDHQLPYKNVIGQVILDKNPGIT 223

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN------SFTQP--NAGINVHMLEWV 202
            +     T     R++  E L      +I +  EN       F++   N  +     E  
Sbjct: 224 SVVNKTNTIDSTYRNFQMEVL-AGEENMITKVKENYVTYEFDFSKVYWNPRLGT---EHN 279

Query: 203 LAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVK 260
                    D+L +++ G G F++  A+    V A ++   S +   +N   N V   V+
Sbjct: 280 RIIGFLKARDVLFDVFAGVGPFAVPAAKKNCTVYANDLNPESYKWLLHNCKLNKVEKRVQ 339

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYPHI 318
                 ++F +   ++                  I ++ P   ++  DA   +++  P  
Sbjct: 340 AFNTDGRDFIKTTIKKELLKYADMPSAEEKPSLHIAMNLPALAVEFLDAFKNLLEEEP-- 397

Query: 319 LYISCN 324
               CN
Sbjct: 398 ----CN 399


>gi|284993169|ref|YP_003411724.1| modification methylase, HemK family [Geodermatophilus obscurus DSM
           43160]
 gi|284066415|gb|ADB77353.1| modification methylase, HemK family [Geodermatophilus obscurus DSM
           43160]
          Length = 287

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 26/188 (13%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRV 234
            L        F          ++E  +A          +++L CG+G   L +A     V
Sbjct: 67  GLRVAVEPGVF--VPRQRTALLVERAVALLRDAPRTPLVVDLCCGSGAVGLAVATALGPV 124

Query: 235 --LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
              A ++   +V  AR N+A       ++ +        A  R R    L  ++      
Sbjct: 125 ELHAADVDPAAVRCARRNLAGVG---GRVHQGDLYAALPAGLRGRV--DLLAVNAPYVPS 179

Query: 293 KTIFVDPPRSGLDDATVGM------VQAYPHILYISCNPDSLCRDLSILSTTHTIERLAL 346
             + + PP +   +    +            +        +  RD   L+   ++     
Sbjct: 180 AALALMPPEARDHEPRTALDGGPDGTGLQRRV-------AAEARDW--LAPGGSLIVETS 230

Query: 347 FDQFPYTR 354
             Q P+T 
Sbjct: 231 VRQAPHTA 238


>gi|284046898|ref|YP_003397238.1| methyltransferase type 12 [Conexibacter woesei DSM 14684]
 gi|283951119|gb|ADB53863.1| Methyltransferase type 12 [Conexibacter woesei DSM 14684]
          Length = 337

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LAA+      +L+L CG+G  + +LA     V  V+    ++  A      +    V   
Sbjct: 28  LAASLLRDKRVLDLCCGSGYGASILAETAGSVHGVDFDAATIGDAA--ARVSAEVPVSFE 85

Query: 263 RMSSKEFTQAMRREREFN 280
              + +F Q       F+
Sbjct: 86  VGDAVDFLQRPDVLERFD 103


>gi|255262461|ref|ZP_05341803.1| methyltransferase type 12 [Thalassiobium sp. R2A62]
 gi|255104796|gb|EET47470.1| methyltransferase type 12 [Thalassiobium sp. R2A62]
          Length = 210

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             G+   +LEL CG G+ +L LA     ++A + ++  +E AR  IA +   N++    +
Sbjct: 36  YLGVGDRVLELGCGTGSTALRLAGSVGHLVATDFSEGMIEIAREKIADSEDANIEARVAT 95

Query: 266 SKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPP 300
             + T           L  +  D+         +  P
Sbjct: 96  PADITDGTYDAVLGFNLFHLVEDVDGALADVAGLVKP 132


>gi|218557826|ref|YP_002390739.1| metallothionein SmtA [Escherichia coli S88]
 gi|218364595|emb|CAR02281.1| putative AdoMet-dependent methyltransferase [Escherichia coli S88]
 gi|315287552|gb|EFU46958.1| methyltransferase domain protein [Escherichia coli MS 110-3]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSVQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|84497456|ref|ZP_00996278.1| hypothetical protein JNB_14718 [Janibacter sp. HTCC2649]
 gi|84382344|gb|EAP98226.1| hypothetical protein JNB_14718 [Janibacter sp. HTCC2649]
          Length = 209

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
                 G  G +L+  CG G  S  LA     V  V+++   VE AR 
Sbjct: 35  AAVTDTGDPGPVLDAGCGAGRMSRYLADRGCEVQGVDLSPGMVEMARR 82


>gi|320533183|ref|ZP_08033904.1| methyltransferase small domain protein [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134615|gb|EFW26842.1| methyltransferase small domain protein [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 178

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 17/101 (16%)

Query: 204 AATKGIQGDLL--ELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
               G  G +L  +L  G+G  +  +A+     RV+AVEI++ +   AR N        V
Sbjct: 1   EVMDGGGGVVLTADLCTGSGAIAACVAKEVPGARVVAVEISETAASLARENCERLVPGRV 60

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +++   + +             L   D++  +   +  +PP
Sbjct: 61  EVIHADATD------------PLVLHDLNG-QVDVVVSNPP 88


>gi|301647566|ref|ZP_07247363.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 146-1]
 gi|301074256|gb|EFK89062.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 146-1]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|299883411|ref|YP_003738964.1| sterol 24-C-methyltransferase [Halalkalicoccus jeotgali B3]
 gi|300712427|ref|YP_003738240.1| sterol 24-C-methyltransferase [Halalkalicoccus jeotgali B3]
 gi|299126111|gb|ADJ16449.1| sterol 24-C-methyltransferase [Halalkalicoccus jeotgali B3]
 gi|299126837|gb|ADJ17173.1| sterol 24-C-methyltransferase [Halalkalicoccus jeotgali B3]
          Length = 289

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 213 LLELYCGNGNFSLVLARHFDRV-LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           LL++ CG G  +L LA     V   +++   +V  AR N AA    + + V   +    Q
Sbjct: 77  LLDIGCGRGGPTLHLATEHGFVTTGIDLVPCNVSMARRNAAA--TVDAQFVVGDA---LQ 131

Query: 272 AMRREREFNRLKDIDIHSYRFKT 294
                  FN    ID   Y    
Sbjct: 132 LPFERDSFNVCTAIDSPPYLPNK 154


>gi|291229052|ref|XP_002734493.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 363

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 2/107 (1%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                ++++ CG+G     L   F       V+ +  +V  AR +       NV      
Sbjct: 173 DSGAKVVDIGCGSGIVLNRLGPQFPKSEFHGVDFSSEAVTKARDDAEKMGATNVLFHEYD 232

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           + +         ++    +          +  +  R    +    MV
Sbjct: 233 AAKLPADWLNSFDYVIAMESIHDQAYPDVVLNEISRILKPEGYFSMV 279


>gi|261403494|ref|YP_003247718.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
 gi|261370487|gb|ACX73236.1| protein of unknown function Met10 [Methanocaldococcus vulcanius M7]
          Length = 336

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +++++ G G FS+   R+  ++ A++I   ++E  + NI  N + +
Sbjct: 199 VVDMFAGVGPFSIAC-RNAKKIYAIDINPHAIELLKKNIKLNKLEH 243


>gi|240104100|ref|YP_002960409.1| SAM-dependent methyltransferase, ubiE/COQ5 family [Thermococcus
           gammatolerans EJ3]
 gi|239911654|gb|ACS34545.1| SAM-dependent methyltransferase, ubiE/COQ5 family [Thermococcus
           gammatolerans EJ3]
          Length = 228

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           LE +L      +G +L+L CG G FS +L      V+ V+ ++  +  AR          
Sbjct: 28  LEPLLMKFMKEKGKVLDLGCGAGGFSFLLEDLGFTVVGVDNSEYMLSLARGFAKEKGSK- 86

Query: 259 VKIVRMSSKEF 269
           V+ ++  ++E 
Sbjct: 87  VEFIKADAREL 97


>gi|229139221|ref|ZP_04267796.1| Methyltransferase [Bacillus cereus BDRD-ST26]
 gi|228644280|gb|EEL00537.1| Methyltransferase [Bacillus cereus BDRD-ST26]
          Length = 212

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A  N+  + V NV+  
Sbjct: 1   MKERCKLSDTLLDVGTGGGENVLNIASSAKLLIGIDNSNGMIETAHSNLKKSGVQNVEFF 60

Query: 263 RMSSKEFT 270
           +M+S+  T
Sbjct: 61  QMNSEALT 68


>gi|196043669|ref|ZP_03110907.1| methyltransferase [Bacillus cereus 03BB108]
 gi|196025978|gb|EDX64647.1| methyltransferase [Bacillus cereus 03BB108]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A+ N   + V NV+  
Sbjct: 39  VKERCKLSDTLLDVGTGGGENVLNIASSAKLLIGIDNSNGMIETAQSNFKKSGVQNVEFF 98

Query: 263 RMSSKEFT 270
           +M S+  T
Sbjct: 99  QMDSEALT 106


>gi|219847595|ref|YP_002462028.1| methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
 gi|219541854|gb|ACL23592.1| Methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
          Length = 199

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E +  + +   G  ++L CG G   + LAR   +V  ++    ++  A+     N+    
Sbjct: 27  EIIALSQELPPGRAIDLGCGTGRACIWLARAGWQVDGIDFVPEAIAIAQE--RVNNAGVT 84

Query: 260 KIVRMSSKEFT 270
             VR+   +  
Sbjct: 85  DRVRLYVADAA 95


>gi|91204134|emb|CAJ71787.1| similar to phosphatidylethanolamine methyltransferase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 272

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           E+V          +L++ CG GN +L  AR    V  V+I    +E  R       +
Sbjct: 37  EFVDRLKVTPGLRVLDVACGTGNLTLPCARAGACVTGVDIVPNLLEQGRDRAKTEGL 93


>gi|82544812|ref|YP_408758.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella boydii Sb227]
 gi|81246223|gb|ABB66931.1| putative adenine-specific methylase [Shigella boydii Sb227]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|52142920|ref|YP_083909.1| methyltransferase [Bacillus cereus E33L]
 gi|196036693|ref|ZP_03104085.1| methyltransferase [Bacillus cereus W]
 gi|225864559|ref|YP_002749937.1| methyltransferase [Bacillus cereus 03BB102]
 gi|51976389|gb|AAU17939.1| methyltransferase [Bacillus cereus E33L]
 gi|195990657|gb|EDX54633.1| methyltransferase [Bacillus cereus W]
 gi|225790454|gb|ACO30671.1| methyltransferase [Bacillus cereus 03BB102]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A+ N   + V NV+  
Sbjct: 39  VKERCKLSDTLLDVGTGGGENVLNIASSAKLLIGIDNSNGMIETAQSNFKKSGVQNVEFF 98

Query: 263 RMSSKEFT 270
           +M S+  T
Sbjct: 99  QMDSEALT 106


>gi|15837998|ref|NP_298686.1| hypothetical protein XF1397 [Xylella fastidiosa 9a5c]
 gi|9106407|gb|AAF84206.1|AE003971_5 hypothetical protein XF_1397 [Xylella fastidiosa 9a5c]
          Length = 303

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L   +AA   +   L++L CG G  +   A+   RV+A++ A   V  A     A  + 
Sbjct: 67  LREAVAAELPVGARLIDLGCGTGLDAQAFAQRGYRVMAIDGASAMVAPAHQRAQAVGLE 125


>gi|33151297|ref|NP_872650.1| ribosomal protein L11 methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|38605187|sp|Q7VPN5|PRMA_HAEDU RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|33147517|gb|AAP95039.1| ribosomal protein L11 methyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W L         +++  CG+G  ++  L     + + ++I   ++ A++ N AAN V 
Sbjct: 149 LQW-LDGLDLTGKTVIDFGCGSGILAISALKLGAKQAIGIDIDPQAILASQNNAAANGVA 207

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +   + + +K+  QA++ +     +    +       + +  P
Sbjct: 208 DRLQLFL-AKDQPQALQADVVVANILAGPLKELAPNIMTLVKP 249


>gi|187731589|ref|YP_001881152.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella boydii CDC 3083-94]
 gi|194432949|ref|ZP_03065233.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Shigella dysenteriae 1012]
 gi|312967630|ref|ZP_07781845.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 2362-75]
 gi|187428581|gb|ACD07855.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Shigella boydii CDC 3083-94]
 gi|194418937|gb|EDX35022.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Shigella dysenteriae 1012]
 gi|312287827|gb|EFR15732.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 2362-75]
 gi|320174687|gb|EFW49820.1| Ribosomal protein L3 methyltransferase [Shigella dysenteriae CDC
           74-1112]
 gi|320183787|gb|EFW58621.1| Ribosomal protein L3 methyltransferase [Shigella flexneri CDC
           796-83]
 gi|323187945|gb|EFZ73240.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli RN587/1]
 gi|332090094|gb|EGI95193.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella dysenteriae 155-74]
 gi|332093472|gb|EGI98530.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella boydii 3594-74]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|312876839|ref|ZP_07736816.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796354|gb|EFR12706.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 304

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN 257
            +        D+L++  G+G  ++  A+ F   RVLAV+I + +V+ A  N   N V 
Sbjct: 161 AIQEYVKPGMDVLDVGTGSGILAIA-AKKFLAKRVLAVDIDEVAVKVAEENARLNGVE 217


>gi|294492995|gb|ADE91751.1| SmtA protein [Escherichia coli IHE3034]
 gi|307627652|gb|ADN71956.1| putative metallothionein SmtA [Escherichia coli UM146]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSVQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|302866075|ref|YP_003834712.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302568934|gb|ADL45136.1| methyltransferase small [Micromonospora aurantiaca ATCC 27029]
          Length = 489

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 18/97 (18%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
           AA +      L+L  G+G  +L L  H  RV A ++++ ++  A    A N   + +++R
Sbjct: 145 AAVRPTVDTALDLGTGSGVQALHLGTHARRVTATDVSERALRFAATTAALNG-QDWELLR 203

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                                  +   RF  +  +PP
Sbjct: 204 GDMV-----------------APVAGRRFDLVVSNPP 223


>gi|215487543|ref|YP_002329974.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215265615|emb|CAS10018.1| N5-glutamine methyltransferase [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|254429562|ref|ZP_05043269.1| methyltransferase, HemK family [Alcanivorax sp. DG881]
 gi|196195731|gb|EDX90690.1| methyltransferase, HemK family [Alcanivorax sp. DG881]
          Length = 275

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFS--LVLARHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L+     +  +++L  G G     L LAR    V  V++++ +++ A  N  
Sbjct: 95  TETLVEKALSLDVPAEARVVDLGTGTGAIGVSLALARPDWHVTLVDLSEAALQVAADNAH 154

Query: 253 ANHVN 257
                
Sbjct: 155 RLGAA 159


>gi|170759978|ref|YP_001785391.1| hypothetical protein CLK_3237 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406967|gb|ACA55378.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 246

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 18/129 (13%)

Query: 211 GDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
             +++L  G G    +LA       ++ +EI K   + A  +I  N++   VK +    K
Sbjct: 47  AKVVDLCSGTGIIPFILAGKTNASNIIGIEIQKEIADMANRSIKYNNLQEKVKFIEGDLK 106

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPD 326
                         LKDI+    +   + V+PP        + +          I CN D
Sbjct: 107 NL----------KLLKDIE----KVDVVTVNPPYKTQGTGIININDKNAISRHEICCNLD 152

Query: 327 SLCRDLSIL 335
            + +   +L
Sbjct: 153 DVVKAAKVL 161


>gi|225164436|ref|ZP_03726695.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224800959|gb|EEG19296.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 265

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA-NHVNNVKIVRMSSKE 268
           Q  +L+L CG G  ++  A H   V+ ++     +  A +     N   NV   + SS +
Sbjct: 41  QDRVLDLGCGPGFLAVAFASHAREVIGIDPEPAMLREAEHYARHENATANVSFRQGSSYD 100

Query: 269 FTQAMRRER 277
               + + R
Sbjct: 101 LAPELGQFR 109


>gi|154337716|ref|XP_001565084.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062131|emb|CAM36518.1| hypothetical protein, unknown function [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           M EWV + +   +G  +LEL CG G     +A+H  +V+  + +  S+     ++A N  
Sbjct: 92  MCEWVTSHSNMFEGKSVLELGCGAGILGFTVAQHARQVVLTDCSPVSLALVLESVARNDY 151

Query: 257 NNVKIVRM 264
            N  +  +
Sbjct: 152 RNCDVAVL 159


>gi|14591115|ref|NP_143190.1| hypothetical protein PH1305 [Pyrococcus horikoshii OT3]
 gi|93278437|pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
           From Pyrococcus Horikoshii Ot3
 gi|93278438|pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
           From Pyrococcus Horikoshii Ot3
 gi|93278439|pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
           From Pyrococcus Horikoshii Ot3
 gi|3257726|dbj|BAA30409.1| 252aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+L CG G  +L LA     V+ +++ +  +  AR      ++  ++ ++    E  
Sbjct: 44  RVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK-IEFLQGDVLEIA 101


>gi|306833532|ref|ZP_07466659.1| methyltransferase domain protein [Streptococcus bovis ATCC 700338]
 gi|304424302|gb|EFM27441.1| methyltransferase domain protein [Streptococcus bovis ATCC 700338]
          Length = 197

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 20/108 (18%)

Query: 207 KGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                 LL+L CG G   + LA+    +   V+I   +++ A+ N   N V         
Sbjct: 55  FEKSKTLLDLGCGYGPLGISLAKVQGVQATMVDINNRAIDLAQKNAEKNGVTANIFQSNI 114

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            ++                    S  F  I  +PP          ++ 
Sbjct: 115 YEKV-------------------SGTFDYIISNPPIRAGKQVVHTIIA 143


>gi|303326461|ref|ZP_07356904.1| methyltransferase [Desulfovibrio sp. 3_1_syn3]
 gi|302864377|gb|EFL87308.1| methyltransferase [Desulfovibrio sp. 3_1_syn3]
          Length = 251

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +  +  +    +    +     +L+  CG G  +  LAR   +V+ V+ +   + AAR 
Sbjct: 12  HGFVAEYGKNLLACVPEDASQCILDFGCGTGELTAALARKAGQVIGVDQSAAMIRAARE 70


>gi|229173546|ref|ZP_04301089.1| Methyltransferase type 11 [Bacillus cereus MM3]
 gi|228609928|gb|EEK67207.1| Methyltransferase type 11 [Bacillus cereus MM3]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            N     ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+ 
Sbjct: 25  ANGPDLQYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFKEVVALDLTEKMLENAKN 81

Query: 250 NIAANHVNNVKIVRMSSKEFTQA 272
            I +N   NV  V  +++    A
Sbjct: 82  FIISNGYENVSFVAGNAESLPFA 104


>gi|221211565|ref|ZP_03584544.1| UbiE/COQ5 methyltransferase [Burkholderia multivorans CGD1]
 gi|221168926|gb|EEE01394.1| UbiE/COQ5 methyltransferase [Burkholderia multivorans CGD1]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L CG G+ S  +A H   V+A ++A P +           + NV+  +  ++  
Sbjct: 45  VLDLGCGAGHASFAVAPHVREVVAYDLAAPMLATVDAAARERGLANVRTQQGPAERL 101


>gi|121593272|ref|YP_985168.1| HemK family modification methylase [Acidovorax sp. JS42]
 gi|120605352|gb|ABM41092.1| [protein release factor]-glutamine N5-methyltransferase [Acidovorax
           sp. JS42]
          Length = 280

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 22/125 (17%)

Query: 195 NVHMLEWVLA-ATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++ W L          + +L  G+G  +L L   R   +VLAV+ +  ++  AR N 
Sbjct: 97  TETLVAWALEVLATRAAPRVADLGTGSGAIALALQHERPDAQVLAVDASAGALAVARANA 156

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               +  V+ ++                N L  +D     F  I  +PP     D  +  
Sbjct: 157 GQLGLP-VRFIQG---------------NWLHGVD---GPFDAIVSNPPYIPAQDPHLAA 197

Query: 312 VQAYP 316
           +   P
Sbjct: 198 LTHEP 202


>gi|14521102|ref|NP_126577.1| menaquinone biosynthesis methlytransferase related [Pyrococcus
           abyssi GE5]
 gi|5458319|emb|CAB49808.1| SAM-dependent methyltransferase [Pyrococcus abyssi GE5]
          Length = 248

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L CG G  +L LA+    V+ +++ +  ++ AR       +  V+ ++ ++ E 
Sbjct: 43  KRILDLACGTGTPTLELAKRGYEVIGLDLHEEMLQVARRKSEKEGIK-VEFIQGNALEI 100


>gi|115352521|ref|YP_774360.1| type 11 methyltransferase [Burkholderia ambifaria AMMD]
 gi|115282509|gb|ABI88026.1| Methyltransferase type 11 [Burkholderia ambifaria AMMD]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +     A      G +L+L CG G+ S  +A H   V+A ++A P +           + 
Sbjct: 30  LQALADAVRATPDGAVLDLGCGAGHASFAVAPHVRDVVAYDLAAPMLATVDAAARERGLV 89

Query: 258 NVKIVRMSSKEF 269
           N++  +  ++  
Sbjct: 90  NIRTQQGPAERL 101


>gi|332278517|ref|ZP_08390930.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella sp. D9]
 gi|332100869|gb|EGJ04215.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella sp. D9]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|323168496|gb|EFZ54176.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella sonnei 53G]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|297539751|ref|YP_003675520.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Methylotenera sp. 301]
 gi|297259098|gb|ADI30943.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Methylotenera sp. 301]
          Length = 320

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 25/133 (18%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLAR 229
           L+ + + L +R+   S     +G+  H  E +     +     +L+L  G G  +L +A+
Sbjct: 111 LSESTKNLSFRRKSES-----SGVEQHDYETLDSDFRRNDDLKVLDLGTGTGAIALAIAK 165

Query: 230 HF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           +     + AV+ +  ++E A+ N     + NV        EFT +   E   N+      
Sbjct: 166 NRPKASITAVDASDAALEIAKQNSQQLSIINV--------EFTLSNWFENLSNQ------ 211

Query: 288 HSYRFKTIFVDPP 300
              RF  I  +PP
Sbjct: 212 ---RFDVIVSNPP 221


>gi|291007719|ref|ZP_06565692.1| methylase of polypeptide chain release factors [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 371

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 3/120 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH 255
             ++ V  A     G   ++  G G  + VLA R   R++A +    ++  AR NIA   
Sbjct: 179 EYVDLVATAALPTGGVAFDIGTGTGVLAAVLAHRGVARIVATDQDPRALACARENIARLG 238

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                 V + + +   A R          I           V  P S +    +  +  +
Sbjct: 239 F--ADRVSVEAADLFPAGRAALVVCNPPWIPAQPTTPIENAVYDPGSRMLRGFLAGLADH 296


>gi|320006881|gb|ADW01731.1| methylase [Streptomyces flavogriseus ATCC 33331]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 18/106 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              ++  +         ++L++  G+G  +L  AR   RV AV+IA+ +V  AR N    
Sbjct: 27  TRLLMAALNREGISPGTEVLDVGTGSGALALHAARLGARVTAVDIARRAVATARLNA--- 83

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            + + + + +   +   A+                  +  +  +PP
Sbjct: 84  -LLHRRRITVQRSDLLSAL--------------PGRSYDLVICNPP 114


>gi|255065352|ref|ZP_05317207.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria sicca ATCC 29256]
 gi|255050177|gb|EET45641.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria sicca ATCC 29256]
          Length = 275

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 32/174 (18%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           D   E      D L AR+ + + +       I   R++      V    LI R       
Sbjct: 38  DPLPEAVAAQLDILQARRLKGEPMAY-----ILGGREFYGRWFEVGPDVLIPRPE----- 87

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEA 246
                   H++E V+       G + +L  G+G  ++ +A  R    V A +I+  ++  
Sbjct: 88  ------TEHLVEAVIG-HLPANGQVWDLGTGSGAVAVTVALERKDAAVRASDISGGALAI 140

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           AR N        V+    S             F   K      +RF  I  +PP
Sbjct: 141 ARKNAETLGAR-VEFALGS------------WFETDKTSSEDKHRFDVIVSNPP 181


>gi|225855535|ref|YP_002737047.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae JJA]
 gi|225722676|gb|ACO18529.1| methyltransferase small domain superfamily [Streptococcus
           pneumoniae JJA]
          Length = 195

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 196 VHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
            +++   +     I  D  +L+   G G  +L LA+    V  V+I++  +E AR  +  
Sbjct: 21  ANLVCQAVEKQIDILSDKVILDFGGGTGLLALPLAKQAKSVTLVDISEKMLEQARLKVEQ 80

Query: 254 NHVNNVKIVRMS-----SKEFTQAMRREREFNRLKDIDIH 288
             + N++ +         ++    +   R  + + D+D  
Sbjct: 81  QAIKNIQFLEQDLPKNPLEKEFDCLAVSRVLHHMPDLDAA 120


>gi|209526045|ref|ZP_03274578.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209493571|gb|EDZ93893.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 162

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 196 VHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAA 253
             +LE VL   K    D+L +L CG+G  ++  A  F  R + ++I    ++ A  N   
Sbjct: 15  QDLLEDVLRWVKVGADDVLYDLGCGDGRVAIAAAEKFGARGVGIDIDPDRIKEATENAQI 74

Query: 254 NHVNNVKIVR 263
             V++  I R
Sbjct: 75  AGVSDRAIFR 84


>gi|170703458|ref|ZP_02894227.1| Methyltransferase type 11 [Burkholderia ambifaria IOP40-10]
 gi|170131635|gb|EDT00194.1| Methyltransferase type 11 [Burkholderia ambifaria IOP40-10]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +     A      G +L+L CG G+ S  +A H   V+A ++A P +             
Sbjct: 30  LQALADAVRATPDGAVLDLGCGAGHASFAVAPHVRDVVAYDLAAPMLATVDAAARERGFA 89

Query: 258 NVKIVRMSSKEF 269
           N++  +  ++  
Sbjct: 90  NIRTQQGPAERL 101


>gi|126513547|gb|ABO15883.1| methyl transferase [Streptomyces sp. UC 11065]
          Length = 148

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           I+G++L+  CGNG  SL LA     V  ++IA+ ++  AR                 + +
Sbjct: 46  IKGEVLDAGCGNGEISLFLAAEGHHVTGIDIAEGAI--ARRTAGGGAEALATFAVRRALD 103

Query: 269 FTQ 271
            + 
Sbjct: 104 LSA 106


>gi|124022235|ref|YP_001016542.1| ribosomal protein L11 methyltransferase [Prochlorococcus marinus
           str. MIT 9303]
 gi|166223428|sp|A2C717|PRMA_PROM3 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|123962521|gb|ABM77277.1| putative methyltransferase for Ribosomal protein L11
           [Prochlorococcus marinus str. MIT 9303]
          Length = 301

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 16/177 (9%)

Query: 103 KLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL 162
            +  +  L       +    +  + D+ W     +   +    +  + L        + L
Sbjct: 66  LMVNLRPLAEPFGLQLANPTWCEVADEDWSLNWKQHWQSDPVGQRLLILPAW-----LDL 120

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            ++Y D         L+ R    S     +  +  +    L     +   + +L CG+G 
Sbjct: 121 PQEYAD--------RLVVRMDPGSAFGTGSHPSTRLCLEALEKNPPLGLRVADLGCGSGV 172

Query: 223 FSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI--VRMSSKEFTQAMRRE 276
                L     +VLA +    +V A+R N   N ++  +   V  S    +  ++ E
Sbjct: 173 LGFAALGFGARQVLAADTDSQAVCASRANAELNQLDLDRFRVVHGSVDALSAQLQGE 229


>gi|110835389|ref|YP_694248.1| hypothetical protein ABO_2528 [Alcanivorax borkumensis SK2]
 gi|110648500|emb|CAL17976.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
          Length = 401

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 47/133 (35%), Gaps = 29/133 (21%)

Query: 208 GIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMS 265
                +L+++   G + +  A    + V  V+ ++ + +    N   N   + V  ++  
Sbjct: 222 AKGARVLDVFSYCGGWGVQAALAGAESVTCVDGSEIATDYVHRNAQLNGVADTVGSIQGD 281

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS---------------GLDDATVG 310
           +            F  +K +     ++  + +DPP                  +++  + 
Sbjct: 282 A------------FAAMKQLIADGEKYDLVVLDPPAFIKRKKDFKNGLAGYHAINELAMR 329

Query: 311 MVQAYPHILYISC 323
           +V+   +++  SC
Sbjct: 330 LVKPGGYLVSASC 342


>gi|288931762|ref|YP_003435822.1| hypothetical protein Ferp_1396 [Ferroglobus placidus DSM 10642]
 gi|288894010|gb|ADC65547.1| protein of unknown function Met10 [Ferroglobus placidus DSM 10642]
          Length = 331

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANH 255
            E +  A    +G+ +L+++ G G F++ +A H   +++ A EI   + +    N+  N 
Sbjct: 172 YEKLRVANLVKEGEIVLDMFAGIGYFTIPIANHSRAEKIYAFEINFDAYKLLLENLRLNK 231

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
           + NV    + S+   ++         +   D      K +
Sbjct: 232 IRNVVAANIDSRFTPESFADRVVMGHIFAEDFIEVAVKAL 271


>gi|284035461|ref|YP_003385391.1| methyltransferase [Spirosoma linguale DSM 74]
 gi|283814754|gb|ADB36592.1| methyltransferase [Spirosoma linguale DSM 74]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L A       +L  +C +G FS+  L      V +V++++ ++     NI AN   + 
Sbjct: 216 RALLAQYAEGKKVLNAFCYSGGFSVYGLKAGATLVHSVDVSQKAITLTEQNITANFGESD 275

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
              +  +++    ++             H  ++  + +DPP      +     VQ Y  +
Sbjct: 276 DRHQAFAEDVMHYLKN------------HDQQYDVVVLDPPAFAKSQSARHRAVQGYKRL 323

Query: 319 LYISCNPDSLCR 330
                N +   R
Sbjct: 324 -----NAEGFKR 330


>gi|261364709|ref|ZP_05977592.1| RNA methyltransferase, RsmD family [Neisseria mucosa ATCC 25996]
 gi|288567005|gb|EFC88565.1| RNA methyltransferase, RsmD family [Neisseria mucosa ATCC 25996]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 31/173 (17%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
            +N+ +I   +    + +      L  R   +S       +   +  W+     G+  + 
Sbjct: 7   HSNQVRIIGGQCRGRKLVFADTDGL--RPTPDS-------VREKLFNWLGQDLTGL--NA 55

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G       +R+  RV+  +  + + +  R N  A  ++ ++I+      + Q 
Sbjct: 56  LDLFAGSGALGFEAASRNAKRVVLADNNRKTADMLRQNARALGLDKLEILNTDGLAYLQR 115

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321
                           S +F  +F+DPP +  D     A++        ++YI
Sbjct: 116 ---------------SSEKFDVVFLDPPFAWQDWENLFASLKNSLKNGAMVYI 153


>gi|150026062|ref|YP_001296888.1| methylase of polypeptide chain release factors [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772603|emb|CAL44086.1| Methylase of polypeptide chain release factors [Flavobacterium
           psychrophilum JIP02/86]
          Length = 285

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 78/201 (38%), Gaps = 26/201 (12%)

Query: 107 IDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDY 166
           +  L S  D+  +   ++ +L+   +   + L  +   +   IQL+          ++  
Sbjct: 11  VQALASIFDEKEIESFFYIILEAFHQLKRVDLVLSPDLKLDNIQLLQWETVLLQLKEQKP 70

Query: 167 VDERLTVAGR-TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG----DLLELYCGNG 221
           +   L       L +   EN+   P       ++EW++     I       +L++  G+G
Sbjct: 71  IQYILGETQFFGLPFYVNENTLI-PRPE-TEELVEWIIKENLKISSLKNLKILDIGTGSG 128

Query: 222 NFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
             ++ LA++     V A++++  ++  A+ N   N V+ +  +               E 
Sbjct: 129 CIAISLAKNLPNASVFAIDVSDKALATAQKNAVLNEVD-ITFI---------------EK 172

Query: 280 NRLKDIDIHSYRFKTIFVDPP 300
           N L+  D++   F  I  +PP
Sbjct: 173 NILQTEDLNQ-EFDIIVSNPP 192


>gi|91210023|ref|YP_540009.1| putative metallothionein SmtA [Escherichia coli UTI89]
 gi|91071597|gb|ABE06478.1| S-adenosylmethionine-dependent methyltransferase [Escherichia coli
           UTI89]
          Length = 265

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSVQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|91211627|ref|YP_541613.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli UTI89]
 gi|117624520|ref|YP_853433.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli APEC O1]
 gi|237704811|ref|ZP_04535292.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia sp. 3_2_53FAA]
 gi|91073201|gb|ABE08082.1| protein-(glutamine-N5) methyltransferase [Escherichia coli UTI89]
 gi|115513644|gb|ABJ01719.1| protein-(glutamine-N5) methyltransferase [Escherichia coli APEC O1]
 gi|226901177|gb|EEH87436.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia sp. 3_2_53FAA]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|20091863|ref|NP_617938.1| hypothetical protein MA3045 [Methanosarcina acetivorans C2A]
 gi|19917055|gb|AAM06418.1| predicted protein [Methanosarcina acetivorans C2A]
          Length = 268

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 28/66 (42%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +L++  G G  ++  A    RV AVE A+    A   +     ++N+ ++  + +E 
Sbjct: 62  DWHVLDIASGPGAITIPFAERVSRVTAVEPAERMAAALMSSAQERGLSNIDVIPQTWQEV 121

Query: 270 TQAMRR 275
             A   
Sbjct: 122 DAAAYA 127


>gi|84516360|ref|ZP_01003720.1| hypothetical protein SKA53_05478 [Loktanella vestfoldensis SKA53]
 gi|84510056|gb|EAQ06513.1| hypothetical protein SKA53_05478 [Loktanella vestfoldensis SKA53]
          Length = 401

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 30/160 (18%)

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
              Y+ + +      L + Q  N                  AA       +L+++   G 
Sbjct: 196 GATYLADIMGGQKTGLFFDQRPN---------------HAFAAGLSRDARVLDVFAHVGG 240

Query: 223 FSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFTQAMRREREFN 280
           F L         VLA++ + P+++ A    AA  V +    R   + +   A+  E    
Sbjct: 241 FGLAALAQGAASVLAIDGSAPALDLAEQGAAAMGVADRFSTRKGDAFDVLTALAEE---- 296

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGM-VQAYPHIL 319
                     +F  +  DPP      A +   ++AY  + 
Sbjct: 297 --------GAQFDVVICDPPAFAPGKAALEAGLRAYERVA 328


>gi|191165479|ref|ZP_03027320.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli B7A]
 gi|194436322|ref|ZP_03068424.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli 101-1]
 gi|209919830|ref|YP_002293914.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli SE11]
 gi|218695929|ref|YP_002403596.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli 55989]
 gi|253772746|ref|YP_003035577.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162339|ref|YP_003045447.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli B str. REL606]
 gi|256017512|ref|ZP_05431377.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella sp. D9]
 gi|260856374|ref|YP_003230265.1| N5-glutamine methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|260869052|ref|YP_003235454.1| N5-glutamine methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300822206|ref|ZP_07102348.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 119-7]
 gi|300903722|ref|ZP_07121637.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 84-1]
 gi|300922056|ref|ZP_07138198.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 182-1]
 gi|301304873|ref|ZP_07210977.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 124-1]
 gi|301328836|ref|ZP_07221878.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 78-1]
 gi|309793214|ref|ZP_07687642.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 145-7]
 gi|312973409|ref|ZP_07787581.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 1827-70]
 gi|331669030|ref|ZP_08369878.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA271]
 gi|331678277|ref|ZP_08378952.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H591]
 gi|190904402|gb|EDV64110.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli B7A]
 gi|194425050|gb|EDX41035.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli 101-1]
 gi|209913089|dbj|BAG78163.1| putative adenine-specific methylase [Escherichia coli SE11]
 gi|218352661|emb|CAU98442.1| N5-glutamine methyltransferase [Escherichia coli 55989]
 gi|242377963|emb|CAQ32732.1| N5-glutamine methyltransferase [Escherichia coli BL21(DE3)]
 gi|253323790|gb|ACT28392.1| modification methylase, HemK family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974240|gb|ACT39911.1| N5-glutamine methyltransferase [Escherichia coli B str. REL606]
 gi|253978407|gb|ACT44077.1| N5-glutamine methyltransferase [Escherichia coli BL21(DE3)]
 gi|257755023|dbj|BAI26525.1| N5-glutamine methyltransferase [Escherichia coli O26:H11 str.
           11368]
 gi|257765408|dbj|BAI36903.1| N5-glutamine methyltransferase [Escherichia coli O111:H- str.
           11128]
 gi|300404304|gb|EFJ87842.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 84-1]
 gi|300421556|gb|EFK04867.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 182-1]
 gi|300525336|gb|EFK46405.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 119-7]
 gi|300839802|gb|EFK67562.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 124-1]
 gi|300844785|gb|EFK72545.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 78-1]
 gi|308123500|gb|EFO60762.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 145-7]
 gi|310332004|gb|EFP99239.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 1827-70]
 gi|315255268|gb|EFU35236.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 85-1]
 gi|320199921|gb|EFW74510.1| Ribosomal protein L3 methyltransferase [Escherichia coli EC4100B]
 gi|323156482|gb|EFZ42637.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli EPECa14]
 gi|323176744|gb|EFZ62334.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 1180]
 gi|323961403|gb|EGB57014.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H489]
 gi|323970953|gb|EGB66204.1| protein-(glutamine-N5) methyltransferase [Escherichia coli TA007]
 gi|324020853|gb|EGB90072.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 117-3]
 gi|324117792|gb|EGC11691.1| protein-(glutamine-N5) methyltransferase [Escherichia coli E1167]
 gi|331064224|gb|EGI36135.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA271]
 gi|331074737|gb|EGI46057.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H591]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|116668825|ref|YP_829758.1| HemK family modification methylase [Arthrobacter sp. FB24]
 gi|116608934|gb|ABK01658.1| modification methylase, HemK family [Arthrobacter sp. FB24]
          Length = 313

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 9/119 (7%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIA 252
              +L  + A   G    +++L CG+G     LA       + A ++   +V  A+ NI 
Sbjct: 133 QAELL--LRATHDGGVPRVVDLCCGSGAVGAALAARVAGIELHAADLDPTAVLCAKGNIE 190

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                   + +    E   A  R R    + +          I   PP +   +  + +
Sbjct: 191 PAG---GHVHQGDLFEALPARLRGRITVLVANAPYVPT--AAIGTMPPEARAHEPLMSL 244


>gi|326498071|dbj|BAJ94898.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 210 QGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSK 267
           +GD++ +++ G G FS+   +    V A ++   S+   + N   N V +        ++
Sbjct: 219 KGDVICDMFAGIGPFSIPAGQKGCVVYANDLNPDSIHYLKTNAKINKVEDYIFTYNKDAR 278

Query: 268 EFTQAMRREREFNRLKD 284
            F Q++    +     +
Sbjct: 279 VFMQSLMAVPDPETKPE 295


>gi|325066533|ref|ZP_08125206.1| methyltransferase family protein [Actinomyces oris K20]
          Length = 384

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+L CG G  +L L RH + V+A +I+  ++    +N A   V+       ++ E   
Sbjct: 15  TALDLGCGCGIQTLYLLRHAEHVVATDISARALAFTAFNTALAGVSVTGSAPCAASEADV 74

Query: 272 AMRREREFNRLKDI------DIHSYRFKTIFVDPPRSGLDDATVGM 311
                    RL+ +       +   RF  I  +PP      A    
Sbjct: 75  KPGPASGSGRLELLRGSLLEPVAGRRFDLIASNPPFVLTPPAVREA 120


>gi|288956983|ref|YP_003447324.1| HemK protein [Azospirillum sp. B510]
 gi|288909291|dbj|BAI70780.1| HemK protein [Azospirillum sp. B510]
          Length = 282

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 57/171 (33%), Gaps = 18/171 (10%)

Query: 139 RDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
           +DA H      +   R    +I   R++    L +   TL  R                +
Sbjct: 52  QDAAHVLTLVERRAAREPVGRILGHREFWTIDLVLNPDTLEPRPD-----------TETV 100

Query: 199 LEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAAN 254
           +E  LAA    +    L++   G G   L L         + V+++  +V+AA  N   N
Sbjct: 101 VEAALAAIPDRKAPLRLIDFGTGTGCILLALLSELPNATGVGVDLSPLAVQAAAGNAERN 160

Query: 255 HV-NNVKIVRMS-SKEFTQAMR-REREFNRLKDIDIHSYRFKTIFVDPPRS 302
            + +  +      +K+              +   DI +   +    DP R+
Sbjct: 161 GLADRARFQIGDWAKDIRDRFDIVVSNPPYIPSADIAALEPEVRDHDPLRA 211


>gi|262283226|ref|ZP_06060993.1| methyltransferase [Streptococcus sp. 2_1_36FAA]
 gi|262261478|gb|EEY80177.1| methyltransferase [Streptococcus sp. 2_1_36FAA]
          Length = 184

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDIVVDATMGNGHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLAEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +N +++    +   Q
Sbjct: 66  DNAQLILAGHETLDQ 80


>gi|240168974|ref|ZP_04747633.1| methyltransferase [Mycobacterium kansasii ATCC 12478]
          Length = 149

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+LY G+G   L  L+R     L VE  + +      N  A  +    + R +      
Sbjct: 12  VLDLYAGSGALGLEALSRGAASALFVEADQRTAAVIARNAKALGLAGATVRRGTVAAVLA 71

Query: 272 AMRREREFNRLKDI--DIHSYRFKTIFVDPPRSGL 304
           A         L D   D+ +    T+       G 
Sbjct: 72  AGTSAPVDLVLADPPYDVDTADIDTVLAALSTHGW 106


>gi|229139529|ref|ZP_04268100.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST26]
 gi|228644076|gb|EEL00337.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST26]
          Length = 180

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F+ V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFNEVVALDLTEKMLENAKKFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|220934702|ref|YP_002513601.1| 3-demethylubiquinone-9 3-O-methyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996012|gb|ACL72614.1| 3-demethylubiquinone-9 3-O-methyltransferase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 237

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 167 VDERLTVAGRTLIYRQ--IENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           VD R       L +R    E  F  P   IN   L++V          +L++ CG G  +
Sbjct: 9   VDPREVSKFDDLAHRWWDPEGEFK-PLHEINPLRLDYVERRAPLAGARVLDVGCGGGILA 67

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
             +AR    V  +++A   +E AR ++  + +  V   +M  ++  + M    +     +
Sbjct: 68  ESMARRGATVTGIDMASGPLEVARMHLLESGLE-VDYRQMPVEQLAEEMPGAFDVVTCME 126

Query: 285 IDIHSYRFKTIFVDPPR--SGLDDATVGMVQAYPH 317
           +  H     ++     R            +   P 
Sbjct: 127 MLEHVPDPASVVAACARLVKPGGHVFFSTINRNPR 161


>gi|219850692|ref|YP_002465124.1| Methyltransferase type 11 [Methanosphaerula palustris E1-9c]
 gi|219544951|gb|ACL15401.1| Methyltransferase type 11 [Methanosphaerula palustris E1-9c]
          Length = 293

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 32/74 (43%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             + + +       +  +L++  G G  +L L+     V  VE A   VE  + +I +  
Sbjct: 56  ARVQQTIRDLHPNRKERVLDIGAGPGTLALPLSPLVRSVTTVEPAGGMVEVLKEHIQSEG 115

Query: 256 VNNVKIVRMSSKEF 269
           ++N+  ++   ++ 
Sbjct: 116 IDNITCIQKRWEDV 129


>gi|190894277|ref|YP_001984571.1| methyltransferase nodulation protein [Rhizobium etli CIAT 652]
 gi|190699938|gb|ACE94021.1| methyltransferase nodulation protein [Rhizobium etli CIAT 652]
          Length = 205

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 56/154 (36%), Gaps = 18/154 (11%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML   LA  +G   + LE+ C  G F++ LA H  R+  +++   ++E +R       
Sbjct: 36  TQMLRLALA--QGSISNALEVGCAAGAFTVQLAPHCKRLTVIDVVPHAIERSRR--RMRD 91

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             ++  +    ++F+   R         D+ + +     I       G     V M+   
Sbjct: 92  SPHISWIVSDVQQFSPDERF--------DLIVVAEVLYYIGGIAEMRGAVRNLVRMLAPD 143

Query: 316 PHILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349
            ++++ S       RD +     H      + D 
Sbjct: 144 GYLVFGS------ARDANCRRWGHVAGAETVLDM 171


>gi|117623139|ref|YP_852052.1| putative metallothionein SmtA [Escherichia coli APEC O1]
 gi|237707091|ref|ZP_04537572.1| SmtA [Escherichia sp. 3_2_53FAA]
 gi|115512263|gb|ABJ00338.1| SmtA [Escherichia coli APEC O1]
 gi|226898301|gb|EEH84560.1| SmtA [Escherichia sp. 3_2_53FAA]
 gi|323953371|gb|EGB49237.1| methyltransferase domain-containing protein [Escherichia coli H252]
 gi|323958226|gb|EGB53935.1| methyltransferase domain-containing protein [Escherichia coli H263]
          Length = 265

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 38  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSVQMIDRAKQAAEAKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|114797214|ref|YP_759813.1| UbiE/COQ5 family methlytransferase [Hyphomonas neptunium ATCC
           15444]
 gi|114737388|gb|ABI75513.1| methyltransferase, UbiE/COQ5 family [Hyphomonas neptunium ATCC
           15444]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 191 NAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
           N G  V + EWV       Q   +L++ CG G+  + LA+ +    ++AV+   P +   
Sbjct: 203 NDGGGVAVAEWVKQNLPEFQPKRILDIGCGLGHNVVPLAQAYPDAEIVAVDAGAPMLRYG 262

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQ 271
                    +N+  ++    + +Q
Sbjct: 263 LARAKTLGADNITFLQGDVSDLSQ 286


>gi|111221464|ref|YP_712258.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Frankia alni ACN14a]
 gi|111148996|emb|CAJ60676.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Frankia alni ACN14a]
          Length = 303

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N      + + VL        D+L++ CG G  +  +A     V AV++++ ++  AR  
Sbjct: 56  NRRTRQVLADEVLGRYLQADDDVLDVGCGPGYLAAAVAPRVHSVTAVDVSRGALACARV- 114

Query: 251 IAANHVNNVKIVRMS 265
              N   N+  V + 
Sbjct: 115 --LNPAPNLDYVTVD 127


>gi|4731342|gb|AAD28459.1|AF127374_14 MitM [Streptomyces lavendulae]
          Length = 283

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 37/120 (30%), Gaps = 12/120 (10%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV-NNV 259
                 G    +L+L CG G   + +AR     V  + ++   V  A        + +  
Sbjct: 64  AERLRIGAGSRVLDLGCGVGTPGVRIARLSGAHVTGISVSHEQVVRANALAEEAGLADRA 123

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +  R  + +               +        ++I   P R+ +      +++    ++
Sbjct: 124 RFQRADAMDL----------PFEDESFDAVIALESIIHMPDRAQVLAQVGRVLRPGGRLV 173


>gi|89075352|ref|ZP_01161774.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34]
 gi|89048901|gb|EAR54470.1| ribosomal protein L11 methyltransferase [Photobacterium sp. SKA34]
          Length = 294

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L         +++  CG+G  ++  L    ++V+ ++I   ++ A+R N   N V+
Sbjct: 150 LEW-LDGQDLTGKTVIDFGCGSGILAIAALKLGAEKVIGIDIDPQAILASRDNAERNGVS 208

Query: 258 N 258
           +
Sbjct: 209 D 209


>gi|332974798|gb|EGK11713.1| type 12 methyltransferase [Psychrobacter sp. 1501(2011)]
          Length = 248

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 188 TQPNAGINVHMLEW---------VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
            Q N     +   W         +    +   G  +EL CGNG FS +LAR    +L+++
Sbjct: 36  YQDNTDPWQYQTRWYEKRKRDMCLAVLPQAEYGRAIELGCGNGVFSELLARRCQSLLSID 95

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRM 264
             K +V+ A+  +A   +++V++++ 
Sbjct: 96  GNKQAVQLAQQRLA--DLSHVRVIQG 119


>gi|307747201|gb|ADN90471.1| Conserved domain protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 239

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 33/63 (52%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               ++++ CG G ++L LA     +LA++ A   +E  + +    ++NN+K   +S + 
Sbjct: 37  QNKSIIDIGCGTGVWTLHLANEAKEILALDSANAMLEILQEDAKKLNLNNIKCKNLSFET 96

Query: 269 FTQ 271
           + Q
Sbjct: 97  WVQ 99


>gi|301632306|ref|XP_002945230.1| PREDICTED: hypothetical protein LOC100498143 [Xenopus (Silurana)
           tropicalis]
          Length = 1123

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 199 LEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANH 255
           L W+       +G   +L+  CG+G  ++  A+H    + AV+I   +V + R N  AN 
Sbjct: 433 LRWIARQGGAQEGLGRVLDYGCGSGILAIGAAKHGAVDIDAVDIDPAAVASTRLNAQANG 492

Query: 256 VN 257
           V 
Sbjct: 493 VQ 494


>gi|295838150|ref|ZP_06825083.1| methyltransferase [Streptomyces sp. SPB74]
 gi|295826895|gb|EFG65137.1| methyltransferase [Streptomyces sp. SPB74]
          Length = 224

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PNA +   + E          G  L+L CG G   + LAR    V   +IA+ ++  AR 
Sbjct: 35  PNAALVREVSELA-------PGRALDLGCGEGADVVWLARRGWTVTGTDIAETALVRARA 87

Query: 250 NIAANHVNNVKIV 262
           + A   V +    
Sbjct: 88  HAAEAGVADRTRF 100


>gi|253999626|ref|YP_003051689.1| methyltransferase [Methylovorus sp. SIP3-4]
 gi|253986305|gb|ACT51162.1| methyltransferase [Methylovorus sp. SIP3-4]
          Length = 214

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 13/108 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+     G+    L+L+ G G      L+R    V+ VE + P+  A + +  
Sbjct: 59  VRQTLFNWLGQDLHGM--RCLDLFSGTGALGFEALSRGAREVVMVEKSLPAFRALQASKT 116

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               +   ++   + +   A              + +  F  IF+DPP
Sbjct: 117 LLSADGASLLNADAAQLLNA----------PSAKLEAGSFDVIFLDPP 154


>gi|144900544|emb|CAM77408.1| transcriptional regulator, ArsR family [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 351

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V A      GDL++L  G G    VLA H +R + +++++  +  AR N+    + +  +
Sbjct: 178 VAALRGRRVGDLVDLGTGTGRVLEVLAPHVERGIGIDLSREMLAVARANLERADLRHCMV 237

Query: 262 VRMSSKEF 269
            +    + 
Sbjct: 238 RQGDITQV 245


>gi|119509583|ref|ZP_01628730.1| protoporphyrinogen oxidase [Nodularia spumigena CCY9414]
 gi|119465772|gb|EAW46662.1| protoporphyrinogen oxidase [Nodularia spumigena CCY9414]
          Length = 304

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 195 NVHMLEWVLAATKGI-------QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVE 245
             ++++  +AA            G   +L  G+G  +L LA  F    + AV+ +  +++
Sbjct: 111 TEYLIDLAVAAATKSGAAPFLNSGHWADLGTGSGAIALGLADAFPKATIHAVDYSPEALK 170

Query: 246 AARYNIAANHVNN-VKIVRMSSKEFTQAMRRE 276
            AR N      +N +K  + S  E   A++ E
Sbjct: 171 IARDNARNLGFDNQIKFYQGSWWEPLAALKGE 202


>gi|83950737|ref|ZP_00959470.1| 3-demethylubiquinone-9 3-methyltransferase [Roseovarius nubinhibens
           ISM]
 gi|83838636|gb|EAP77932.1| 3-demethylubiquinone-9 3-methyltransferase [Roseovarius nubinhibens
           ISM]
          Length = 251

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 11/133 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            LL++ CG G  S  +AR    V+  + A+ ++  AR +     ++ +     +++    
Sbjct: 70  RLLDIGCGGGLLSEPMARRGATVIGADAAEGNLPVARLHAEQGGLD-IDYRHTTAEALAD 128

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRD 331
           A         ++ ++  +     +     R  L    + +            NP S    
Sbjct: 129 AGETFDVVLNMEVVEHVADPLDFLTAC--RRLLKPGGLHLCSTINR------NPKSFA-- 178

Query: 332 LSILSTTHTIERL 344
           ++IL   + +  L
Sbjct: 179 MAILGAEYVMRWL 191


>gi|332092551|gb|EGI97624.1| protein smtA [Shigella boydii 5216-82]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+       V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEEKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|313205202|ref|YP_004043859.1| sam-dependent methyltransferase [Paludibacter propionicigenes WB4]
 gi|312444518|gb|ADQ80874.1| SAM-dependent methyltransferase [Paludibacter propionicigenes WB4]
          Length = 395

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 23/156 (14%)

Query: 170 RLTVAGRTLIYRQIE-----NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           +LT     L +           F   +   N  +LE            +L ++C  G FS
Sbjct: 181 QLTALENGLKFHVDWLRGQKTGFF-VDQRENRSLLER-----YSAGKSVLNMFCYTGGFS 234

Query: 225 L-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
           +  L  +   V +V+ +  +++    N+ AN+ N+ +           A   E  F  L 
Sbjct: 235 VYALRGNAKLVHSVDSSAKAIDLTDKNVEANYPNDPR----------HASFAEDAFKYLN 284

Query: 284 DIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           ++     ++  I +DPP      +A    ++ Y  +
Sbjct: 285 NLHTLDQKYDLIILDPPAFAKHREALRNALKGYKRL 320


>gi|260220344|emb|CBA27787.1| Protein hemK homolog [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 292

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 32/158 (20%)

Query: 173 VAGRTLIYRQIENSFT----QPNAGI------NVHMLEWVLAATKGIQG-DLLELYCGNG 221
           +AG  + Y      F     Q +A +         ++EW L   +      +++L  G+G
Sbjct: 78  LAGEPVAYLVGHKEFYGLNLQVSADVLVPRPDTETLVEWALETLEPTPHARVVDLGTGSG 137

Query: 222 NFSLVL-ARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
             +L L A   + +V AV+ +  ++  A+ N     +                   E  F
Sbjct: 138 AIALALKATRPELQVEAVDFSHAALAVAQGNAQRLGL-------------------EVAF 178

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
            +   +     +F+ I  +PP    DD  +  ++  P 
Sbjct: 179 GQGSWLGSAEGKFQLIVSNPPYIREDDEHLPALRFEPR 216


>gi|288932196|ref|YP_003436256.1| methyltransferase type 11 [Ferroglobus placidus DSM 10642]
 gi|288894444|gb|ADC65981.1| Methyltransferase type 11 [Ferroglobus placidus DSM 10642]
          Length = 181

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
             ++   G G F++ LA+HF RV A+E  +   E  R  +    V NV I+
Sbjct: 38  TAVDFGAGIGYFTVPLAKHFKRVFAIEAQEEMAEKLRKRLEDLGVKNVGII 88


>gi|262198143|ref|YP_003269352.1| methyltransferase [Haliangium ochraceum DSM 14365]
 gi|262081490|gb|ACY17459.1| methyltransferase [Haliangium ochraceum DSM 14365]
          Length = 191

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 206 TKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVR 263
                  +L++  G+G   L  L+R  + V  +E A  ++ A R NIAA  V     +VR
Sbjct: 38  PPPAGARVLDVCAGSGGLGLEALSRGAEAVCFIERAPAALRALRNNIAALGVGGACTVVR 97

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQA 314
             +        R                F  IF+DPP RS +    + ++ A
Sbjct: 98  GEACAIAGRWARAES---------APAAFDWIFLDPPYRSDVSAQMLNILGA 140


>gi|205351590|ref|YP_002225391.1| methyltransferase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205271371|emb|CAR36164.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626618|gb|EGE32961.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 256

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 189 QPNA-------GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q NA            ++      +   Q ++L++ CG G+ S V A+H + V+A +++ 
Sbjct: 17  QANAYLHSAVHAAGRDLVRLAQRLSDFSQANVLDMGCGAGHASFVAAQHVNSVVAYDLSA 76

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +E         H++N+ + +  +++ 
Sbjct: 77  SMLEVVAGAAEERHLSNITLRQGYAEKL 104


>gi|220910017|ref|YP_002485328.1| RNA methylase [Cyanothece sp. PCC 7425]
 gi|219866628|gb|ACL46967.1| putative RNA methylase [Cyanothece sp. PCC 7425]
          Length = 224

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYN 250
             +   MLE       G    L +L  G+G   +  A+ F  R + ++I    VE A  N
Sbjct: 74  PEVVEAMLEVA---KVGKDDILYDLGSGDGRIVITAAQKFGTRGVGIDIDPQRVEEANQN 130

Query: 251 IAANHV-NNVKIVRMS 265
                V + VK ++  
Sbjct: 131 AKEAGVTDRVKFIQQD 146


>gi|146339071|ref|YP_001204119.1| hypothetical protein BRADO2025 [Bradyrhizobium sp. ORS278]
 gi|146191877|emb|CAL75882.1| conserved hypothetical protein; putative
           S-adenosyl-L-methionine-dependent methyltransferase
           domain [Bradyrhizobium sp. ORS278]
          Length = 257

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 211 GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
             +++L  G G   L LAR  D   ++ VE      E AR N  AN +    ++ +    
Sbjct: 45  DRVVDLGAGVGTAGLALARRVDGLALMLVEREPHLAELARDNARANDLQ-ADVIALDVTS 103

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                    E        + S     + ++PP
Sbjct: 104 ---------EAAAFAAAGLGSDSVDVVLMNPP 126


>gi|27819756|gb|AAL29142.2| SD04586p [Drosophila melanogaster]
          Length = 328

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 119 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 177

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V   + E         E   L D+ +   ++  
Sbjct: 178 TAIERSKAATVLAAENAKMLGLLNRFEVHNHTME---------EDKYLPDV-LKDKKYDL 227

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 228 IISNPP 233


>gi|74312848|ref|YP_311266.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella sonnei Ss046]
 gi|73856325|gb|AAZ89032.1| putative adenine-specific methylase [Shigella sonnei Ss046]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|42784500|ref|NP_981747.1| HemK family modification methylase [Bacillus cereus ATCC 10987]
 gi|42740432|gb|AAS44355.1| modification methylase, HemK family [Bacillus cereus ATCC 10987]
          Length = 283

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAQENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|331006082|ref|ZP_08329418.1| Protein-L-isoaspartate O-methyltransferase [gamma proteobacterium
           IMCC1989]
 gi|330420119|gb|EGG94449.1| Protein-L-isoaspartate O-methyltransferase [gamma proteobacterium
           IMCC1989]
          Length = 228

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 15/189 (7%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP- 190
           +    RL   L      I  I   +  +      ++DE L+   R      +   F Q  
Sbjct: 19  QRTRERLVQRL--VDQGISNIEVLDVLRHLPRHLFLDEALS--HRAYEDTALPIGFGQTL 74

Query: 191 -NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
               I   M E ++AA    +  +LE+  G+G  + VLA     + +VE  +P  E AR 
Sbjct: 75  SQPYIVARMTEILIAA-TSKRDKVLEIGTGSGYQTSVLAPFVGELYSVERIRPLQEKARQ 133

Query: 250 NIAANHVNNVKIVRMS------SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            I    ++NV+           S+    A+       R+ +          + + P   G
Sbjct: 134 IIRQLKIHNVRFHHADGGFGWASQGPFDAILSAAAPARIPEDLKQQLAPNGVLIIP--VG 191

Query: 304 LDDATVGMV 312
             +  + MV
Sbjct: 192 EQEQVLTMV 200


>gi|330907746|ref|XP_003295923.1| hypothetical protein PTT_03741 [Pyrenophora teres f. teres 0-1]
 gi|311332354|gb|EFQ95981.1| hypothetical protein PTT_03741 [Pyrenophora teres f. teres 0-1]
          Length = 262

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS--KEFTQAMRR 275
           CG G+   +LARH  +V  +E+++ +V+AA  N+    + N           +F +    
Sbjct: 81  CGRGHDVALLARHGYQVWGLEVSQEAVDAANENVKL-QLKNSGPYHAHVLLGDFFEKGYE 139

Query: 276 EREFNRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
            +     +  D I+ Y F    +   R G  +    ++     ++
Sbjct: 140 SQFGPNFRGFDLIYDYTFLCALLPEMRKGWAERMKSLLSPSGVLV 184


>gi|307327467|ref|ZP_07606653.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
 gi|306886866|gb|EFN17866.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Streptomyces violaceusniger Tu 4113]
          Length = 415

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNG---NFSLVLARHFDRVLAVEIAKPSVEAAR 248
            G+   ML+ + A      G +LEL  G G        LA     V  +++    VE AR
Sbjct: 79  PGVVALMLDQLEAQ---PGGRILELGAGTGYNAALLAHLAGEAGHVTTLDVDDDLVEGAR 135

Query: 249 YNIAANHVNNVKIVRMS 265
            ++AA  + NV  V   
Sbjct: 136 AHLAAAGITNVTAVTRD 152


>gi|301619771|ref|XP_002939257.1| PREDICTED: tRNA wybutosine-synthesizing protein 2 homolog [Xenopus
           (Silurana) tropicalis]
          Length = 408

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 10/219 (4%)

Query: 90  MMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQ 148
           +     LE  L     +   L   S+      ++ +L ++ W   A  L    L  +   
Sbjct: 111 LTWGRDLECDLPRSWQRHGDLVVLSEDCFRDPVWGQLGNELWVSVASSLGAGRLAKQGRV 170

Query: 149 IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG 208
           +    R+    + L  +   E +    R   +   +  F    +  N+   + V + +  
Sbjct: 171 MDDGVRSPNVTLLLGENGWVEHVDNGIR-YTFDITKCMF----SAGNITEKQRVASLSCH 225

Query: 209 IQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMS 265
            +  +++LY G G F+L   +      V A E    +V A + N+  N V++   I    
Sbjct: 226 GE-VVVDLYSGIGYFTLPYLVHAGASFVHACEWNPHAVSALKKNLVINRVSDKCHIHEGD 284

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           +++ T +   +R    L       Y      +     G+
Sbjct: 285 NRQLTLSDVADRVNLGLIPTSEPGYPVACRVLKKDTGGV 323


>gi|298369777|ref|ZP_06981094.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298282334|gb|EFI23822.1| 3-demethylubiquinone-9 3-O-methyltransferase [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
             IN   L ++          +L++ CG G  S  +A+     V  +++A+ S++ A+ +
Sbjct: 35  HDINPLRLNYIDRLAPLAGKRVLDVGCGGGILSESMAKRGAAHVTGIDMAEKSLQTAQTH 94

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            AA  V N+    +  ++         +     ++  H      I 
Sbjct: 95  AAAQKVGNIAYRCVRVEDLAAEAPHSFDVVTCMEMMEHVPDPAAIV 140


>gi|256811407|ref|YP_003128776.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256794607|gb|ACV25276.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 336

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +     +   +++++ G G FS+   ++  ++ A++I   ++E  + NI  N + +
Sbjct: 189 IMKKVSLDDVVVDMFAGVGPFSIAC-KNAKKIYAIDINPHAIELLKKNIKLNKLEH 243


>gi|221108552|ref|XP_002169067.1| PREDICTED: similar to tRNA-(N1G37) methyltransferase [Hydra
           magnipapillata]
          Length = 871

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 20/178 (11%)

Query: 105 FQIDYLTSQSDQAIVTLIYHR-LLDDAWRECAIRLRDALHARKYQIQLIGRANKT----- 158
           F+I+ ++S      +  +  R  L D  +     + D     +  +  +    +T     
Sbjct: 561 FEIENVSSFETVGHIAHLNLREKLLDYKKVIGQVILDKNPNIETVVNKVDSIEETFRYFQ 620

Query: 159 -KICLDRDYVDERLTVAGRTLIY---RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
            ++    D ++  +   G T  +   +   NS  Q        +++ V          + 
Sbjct: 621 MELLAGLDKMNTTVIEHGCTFQFDYSKVYWNSRLQTEHK---RLVDQVKEGDI-----VF 672

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFT 270
           +++ G G FS+ +A+    V   ++ K S  A ++NI  N +N+  +K   M  ++F 
Sbjct: 673 DVFAGVGPFSIPIAKKKCFVYCNDLNKNSYLALKHNITLNKLNSSLIKAYNMDGRDFL 730


>gi|189190352|ref|XP_001931515.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973121|gb|EDU40620.1| conserved hypothetical protein [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 246

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS--KEFTQAMRR 275
           CG G+   +LARH  +V  +E+++ +V+AA  N+ A  + N           +F +    
Sbjct: 65  CGKGHDVALLARHGYQVWGLEVSQGAVDAANENVKA-QLKNSGPYHAQVVLGDFFEKGYE 123

Query: 276 EREFNRLKDID-IHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
            +     +  D I+ Y F    +   R G  +    ++     ++
Sbjct: 124 SQFGPNFQGFDLIYDYTFLCALLPEMRKGWAERMKSLLSPSGVLV 168


>gi|134103755|ref|YP_001109416.1| methylase of polypeptide chain release factors [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133916378|emb|CAM06491.1| methylase of polypeptide chain release factors [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 338

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 3/120 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH 255
             ++ V  A     G   ++  G G  + VLA R   R++A +    ++  AR NIA   
Sbjct: 146 EYVDLVATAALPTGGVAFDIGTGTGVLAAVLAHRGVARIVATDQDPRALACARENIARLG 205

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                 V + + +   A R          I           V  P S +    +  +  +
Sbjct: 206 F--ADRVSVEAADLFPAGRAALVVCNPPWIPAQPTTPIENAVYDPGSRMLRGFLAGLADH 263


>gi|315077779|gb|EFT49830.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL053PA2]
          Length = 291

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 79  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGACPSVIDLCTGTGAIALAV 135

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+  +    V+++   +       RR          
Sbjct: 136 ASEVPGSRVSAVEVDDAALTWTRRNLCDSG---VEVLAGDALRVPDDGRR---------- 182

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 183 ------FDVVVTNPP 191


>gi|313813824|gb|EFS51538.1| methyltransferase small domain protein [Propionibacterium acnes
           HL025PA1]
          Length = 362

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  ++++      AN 
Sbjct: 209 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAIDSTHLTAQANQ 268

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           ++ V                         +DI +     +  +PP     +     T+ M
Sbjct: 269 LDIVTHWCDGL------------------VDIPNESVDAVVTNPPFHRGTAQDHAPTLAM 310

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 311 LADAARVL 318


>gi|312795443|ref|YP_004028365.1| 3-demethylubiquinone 3-methyltransferase [Burkholderia rhizoxinica
           HKI 454]
 gi|312167218|emb|CBW74221.1| 3-demethylubiquinone 3-methyltransferase (EC 2.1.1.64)
           [Burkholderia rhizoxinica HKI 454]
          Length = 237

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 55/143 (38%), Gaps = 15/143 (10%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
             +N   L W+ +    +   +L++ CG G  S  +A+     V  +++++ ++  A  +
Sbjct: 33  HDMNPLRLAWIDSHAHLLDKRVLDVGCGGGILSESIAQLGAASVKGIDLSENALGVADLH 92

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              + V NV+   +S++          +     ++  H  R  +I           A   
Sbjct: 93  SLESGVTNVEYEAISAEALADREPATYDVVTCMEMLEHVPRPVSIV---------RACAQ 143

Query: 311 MVQAYPHILYISCNPDSLCRDLS 333
           +V+    + +      +L R+L 
Sbjct: 144 LVKPGGWVFF-----STLNRNLK 161


>gi|298252242|ref|ZP_06976045.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297546834|gb|EFH80702.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 277

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 29/68 (42%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            + ++L++  G G + L LA     V AVE     +   + +  A  + N+  +    +E
Sbjct: 64  PESEVLDVGAGTGRYVLALAPLVKHVYAVEPNASMLSYLQADARARGITNISSIASIWQE 123

Query: 269 FTQAMRRE 276
               +R +
Sbjct: 124 ADPTLRAD 131


>gi|289523383|ref|ZP_06440237.1| putative N-6 adenine-specific DNA methylase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503075|gb|EFD24239.1| putative N-6 adenine-specific DNA methylase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 247

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 20/112 (17%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL---AVEIAKPSVEAARY 249
            ++  +L W +      +  ++EL   +G  +L+LA+ + +V     ++I +  +E AR 
Sbjct: 29  SVDTVLLSWFVRLR--SKDRVMELGTASGAVALILAKRWQKVSAIKGIDIQEELIEIARE 86

Query: 250 NIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N  AN + + V   R   +E +                     F  + V+PP
Sbjct: 87  NALANDLEDKVTFERGDVREISA--------------ICPPQTFDAVVVNPP 124


>gi|290473619|ref|YP_003466491.1| putative methyltransferase [Xenorhabdus bovienii SS-2004]
 gi|289172924|emb|CBJ79695.1| putative methyltransferase with SAM-dependent methyltransferase
           domain [Xenorhabdus bovienii SS-2004]
          Length = 199

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W++   +  +   L+ + G+G   +  L+R+      +E  +   +    N+A
Sbjct: 40  VRETLFNWLMPIIQ--EARCLDCFSGSGALGIEALSRNASHATLLEYDRHVAKQLSANLA 97

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                N  +V+                N L+ ++     F  +F+DPP R G+   T+ +
Sbjct: 98  LLKAENANVVQG---------------NTLQYLNQTGTPFDVVFLDPPFRKGMLVETINL 142

Query: 312 VQAYPHI-----LYI 321
           ++A   +     +Y+
Sbjct: 143 LEANGWLAEESWIYV 157


>gi|239927071|ref|ZP_04684024.1| putative methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291435417|ref|ZP_06574807.1| methyltransferase [Streptomyces ghanaensis ATCC 14672]
 gi|291338312|gb|EFE65268.1| methyltransferase [Streptomyces ghanaensis ATCC 14672]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            ++ AA +     +L++ CG G F+L+LA     V+ V+ A  S+E AR   A    + V
Sbjct: 27  AYLRAAEEFGARRVLDIGCGTGVFALLLAGRGIEVVGVDPAGASLEVAR---AKPGGDRV 83

Query: 260 KIVRMSSKEFTQ 271
           + +   +     
Sbjct: 84  RWIHGDATALPP 95


>gi|291299236|ref|YP_003510514.1| methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
 gi|290568456|gb|ADD41421.1| Methyltransferase type 11 [Stackebrandtia nassauensis DSM 44728]
          Length = 265

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN 258
           V  A       +L+L  G G   L+ A+      R   +++    +E AR N +     N
Sbjct: 86  VAVADLAEGETVLDLGSGGGIDVLLSAKRVGPTGRAYGLDMTDDMLELARANASKAGATN 145

Query: 259 VKIVRMSSKEF 269
           V+ +R   +E 
Sbjct: 146 VEFLRGEIEEV 156


>gi|223966751|emb|CAR93112.1| CG9531-PA [Drosophila melanogaster]
 gi|223966757|emb|CAR93115.1| CG9531-PA [Drosophila melanogaster]
 gi|223966759|emb|CAR93116.1| CG9531-PA [Drosophila melanogaster]
          Length = 323

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 114 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 172

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V   + E         E   L D+ +   ++  
Sbjct: 173 TAIERSKAATVLAAENAKMLGLLNRFEVHNHTME---------EDKYLPDV-LKDKKYDL 222

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 223 IISNPP 228


>gi|170681331|ref|YP_001744531.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli SMS-3-5]
 gi|218554885|ref|YP_002387798.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli IAI1]
 gi|218705860|ref|YP_002413379.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli UMN026]
 gi|293405796|ref|ZP_06649788.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli FVEC1412]
 gi|298381479|ref|ZP_06991078.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
 gi|300817463|ref|ZP_07097680.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 107-1]
 gi|300936910|ref|ZP_07151797.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 21-1]
 gi|301024163|ref|ZP_07187873.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 69-1]
 gi|331653775|ref|ZP_08354776.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli M718]
 gi|331663848|ref|ZP_08364758.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA143]
 gi|170519049|gb|ACB17227.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli SMS-3-5]
 gi|218361653|emb|CAQ99249.1| N5-glutamine methyltransferase [Escherichia coli IAI1]
 gi|218432957|emb|CAR13851.1| N5-glutamine methyltransferase [Escherichia coli UMN026]
 gi|284922318|emb|CBG35403.1| putative methylase [Escherichia coli 042]
 gi|291428004|gb|EFF01031.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli FVEC1412]
 gi|298278921|gb|EFI20435.1| adenine-specific DNA-methyltransferase [Escherichia coli FVEC1302]
 gi|300396707|gb|EFJ80245.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 69-1]
 gi|300458021|gb|EFK21514.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 21-1]
 gi|300530089|gb|EFK51151.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 107-1]
 gi|331048624|gb|EGI20700.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli M718]
 gi|331059647|gb|EGI31624.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA143]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|160878571|ref|YP_001557539.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium phytofermentans ISDg]
 gi|160427237|gb|ABX40800.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium phytofermentans ISDg]
          Length = 279

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIA 252
              ++E VL        D+LEL  G+G   + LA+  +    +AV+I+  +++ A+ N  
Sbjct: 100 TERLVEEVL--KVSKDKDVLELCTGSGCIIISLAKLGNIKNAVAVDISSDAIKVAKENAK 157

Query: 253 ANHV 256
            N V
Sbjct: 158 DNEV 161


>gi|330817452|ref|YP_004361157.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Burkholderia gladioli BSR3]
 gi|327369845|gb|AEA61201.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Burkholderia gladioli BSR3]
          Length = 312

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 28/196 (14%)

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAG 175
             +   +  RLL +       +L   +  R     L   A        R YVDER+ V  
Sbjct: 59  DTLAPFLDARLLPEEIEAVLAQLERRVEERLPAAYLTNEAWMHGH---RFYVDERVIV-P 114

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+ I   +++   QP              A     G +LEL  G+G  +++ A  F    
Sbjct: 115 RSFIGELLDDG-LQP------------YVADPEQVGAVLELCTGSGCLAVLAAEAFPHAE 161

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
           + AV++++ ++E A  NI+   ++    + +   +    +  E    RL D ++   R+ 
Sbjct: 162 IDAVDLSEDALEVAEINISDYGLD--HRIALHHGDLYAPLPSE----RLADPEL---RYD 212

Query: 294 TIFVDPPRSGLDDATV 309
            I  +PP    D    
Sbjct: 213 VILSNPPYVNADSMAA 228


>gi|303245804|ref|ZP_07332087.1| Methyltransferase type 12 [Desulfovibrio fructosovorans JJ]
 gi|302493067|gb|EFL52932.1| Methyltransferase type 12 [Desulfovibrio fructosovorans JJ]
          Length = 211

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           D L+  CG G  +L LAR   RV  ++ +   +      I A  ++NV  +   
Sbjct: 44  DALDFGCGTGLLTLELARRCQRVTGLDSSPGMLAKLDAKIEAADLDNVATILAD 97


>gi|288905339|ref|YP_003430561.1| hypothetical protein GALLO_1138 [Streptococcus gallolyticus UCN34]
 gi|325978326|ref|YP_004288042.1| ribosomal RNA small subunit methyltransferase C [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732065|emb|CBI13630.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
 gi|325178254|emb|CBZ48298.1| ribosomal RNA small subunit methyltransferase C [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 197

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 20/104 (19%)

Query: 211 GDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             LL+L CG G   + LA+    +   V+I   +++ A+ N   N V          ++ 
Sbjct: 59  KTLLDLGCGYGPLGISLAKVQGVQATMVDINNRAIDLAQKNAEKNGVTANIFQSNIYEKV 118

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           T                     F  I  +PP          ++ 
Sbjct: 119 T-------------------GTFDYIISNPPIRAGKQVVHTIIA 143


>gi|251782462|ref|YP_002996764.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391091|dbj|BAH81550.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 210

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLA--VEIAKPSVEAARYNIAANHVNNVKI 261
                  +L+L CG G   + LA+    V A  V+I   +++ A+ N   N V+    
Sbjct: 65  HFNKGERVLDLGCGYGPLGISLAK-VQEVEATLVDINNRAIDLAQKNARQNQVDVTIF 121


>gi|193212806|ref|YP_001998759.1| PUA domain containing protein [Chlorobaculum parvum NCIB 8327]
 gi|193086283|gb|ACF11559.1| PUA domain containing protein [Chlorobaculum parvum NCIB 8327]
          Length = 394

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 4/121 (3%)

Query: 207 KGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                D+L++Y  +G F+L  +         V+I++ +++ A  N   N +    IV   
Sbjct: 216 YAADADVLDVYTNDGGFALNAMHAGARSTTMVDISQDALQRAEQNARMNGLEKFSIVADD 275

Query: 266 SKEFTQAMRREREFNRLKDIDIHSY---RFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
           +      +R+E     L  +D  S+   R          + L+   + +V+    +   S
Sbjct: 276 AFATLGRLRQENRSYDLVILDPPSFTKSRKTVPTALKAYTKLNRLGLQLVKNEGFLATAS 335

Query: 323 C 323
           C
Sbjct: 336 C 336


>gi|89109150|ref|AP_002930.1| N5-glutamine methyltransferase [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111419|ref|NP_416833.4| N5-glutamine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|157161819|ref|YP_001459137.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli HS]
 gi|170081946|ref|YP_001731266.1| ribosomal protein L3 N5-glutamine methyltransferase [Escherichia
           coli str. K-12 substr. DH10B]
 gi|188493483|ref|ZP_03000753.1| methyltransferase, HemK family [Escherichia coli 53638]
 gi|238901505|ref|YP_002927301.1| N5-glutamine methyltransferase [Escherichia coli BW2952]
 gi|256021985|ref|ZP_05435850.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia sp. 4_1_40B]
 gi|300948520|ref|ZP_07162614.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 116-1]
 gi|300956401|ref|ZP_07168692.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 175-1]
 gi|301023578|ref|ZP_07187342.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 196-1]
 gi|307138995|ref|ZP_07498351.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli H736]
 gi|331642972|ref|ZP_08344107.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H736]
 gi|331658505|ref|ZP_08359449.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA206]
 gi|19859177|sp|P39199|YFCB_ECOLI RecName: Full=Uncharacterized adenine-specific methylase yfcB
 gi|85675359|dbj|BAA16188.2| N5-glutamine methyltransferase [Escherichia coli str. K12 substr.
           W3110]
 gi|87082085|gb|AAC75390.2| N5-glutamine methyltransferase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|157067499|gb|ABV06754.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli HS]
 gi|169889781|gb|ACB03488.1| ribosomal protein L3 N5-glutamine methyltransferase [Escherichia
           coli str. K-12 substr. DH10B]
 gi|188488682|gb|EDU63785.1| methyltransferase, HemK family [Escherichia coli 53638]
 gi|238861843|gb|ACR63841.1| N5-glutamine methyltransferase [Escherichia coli BW2952]
 gi|260448576|gb|ACX38998.1| modification methylase, HemK family [Escherichia coli DH1]
 gi|299880813|gb|EFI89024.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 196-1]
 gi|300316750|gb|EFJ66534.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 175-1]
 gi|300451930|gb|EFK15550.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 116-1]
 gi|309702641|emb|CBJ01970.1| putative methylase [Escherichia coli ETEC H10407]
 gi|315136965|dbj|BAJ44124.1| adenine-specific DNA-methyltransferase [Escherichia coli DH1]
 gi|315298134|gb|EFU57398.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 16-3]
 gi|315615599|gb|EFU96231.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 3431]
 gi|331039770|gb|EGI11990.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H736]
 gi|331054170|gb|EGI26197.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA206]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|324009251|gb|EGB78470.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 57-2]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|319942225|ref|ZP_08016541.1| N5-glutamine methyltransferase [Sutterella wadsworthensis 3_1_45B]
 gi|319804278|gb|EFW01170.1| N5-glutamine methyltransferase [Sutterella wadsworthensis 3_1_45B]
          Length = 276

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 36/232 (15%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVT-LIYHRLLDDAWRECAIRLRDALHARKYQI 149
           MA +++ P +RA+L +   +  + +  I+   +  +  +         L +     ++ +
Sbjct: 1   MADVQIGPSIRAQLGKASPVIGRFEAMILLGFVIGKPREYLIAHDEAELTED-QILQFDM 59

Query: 150 QLIGRANKTKICL---DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAAT 206
            +  RA  T +      +++      V    LI R                ++E  L   
Sbjct: 60  LVDMRAAGTPVPYLTGSQEFFGRHFHVTDAVLIPRPD-----------TEVLVEQALLVV 108

Query: 207 KGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
            G    +L+L  G+G   + LA      +V A + ++ ++E AR N A            
Sbjct: 109 AG-NPKVLDLGTGSGCIGITLALEISGAQVTATDASEAALEIARGNAAEL---------- 157

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                  A + E       D  + + +F  I  +PP    DD  +  ++  P
Sbjct: 158 -------AAKVEFREGFWWDALVPNSQFDLIVSNPPYIRPDDDHLRNLEYEP 202


>gi|313651155|gb|EFS15554.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri 2a str. 2457T]
 gi|332755380|gb|EGJ85744.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri K-671]
 gi|332756543|gb|EGJ86894.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri 2747-71]
 gi|332766150|gb|EGJ96360.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri 2930-71]
 gi|333016296|gb|EGK35627.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri K-304]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|294791348|ref|ZP_06756505.1| RNA methyltransferase, RsmD family [Scardovia inopinata F0304]
 gi|294457819|gb|EFG26173.1| RNA methyltransferase, RsmD family [Scardovia inopinata F0304]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 6/147 (4%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML-EWVLAATKGIQGDLLELYCGNGNFSL-VLARHF 231
              + IY   + S T+P        +   + +     Q  +L+L+ G G      L+R  
Sbjct: 8   FKNSHIYTPKDGSITRPTTDRTKEAIFSRLDSWGILDQARVLDLFAGTGALGFEALSRGA 67

Query: 232 DRVLAVEIAKPSVEAARYNI----AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
             + AVE     V   R       A +   N++I++  ++ +  A               
Sbjct: 68  QALTAVEAHGQVVSCIRRTAGDLLAKDGSLNIRIIKKKAELYLAAGPDHSSLQGAGSHKA 127

Query: 288 HSYRFKTIFVDPPRSGLDDATVGMVQA 314
                  +F+DPP +        MV  
Sbjct: 128 SLLPATVVFMDPPYAVSSQDCSHMVAL 154


>gi|293415624|ref|ZP_06658267.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
 gi|291433272|gb|EFF06251.1| adenine-specific DNA-methyltransferase [Escherichia coli B185]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|282879020|ref|ZP_06287782.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
 gi|281298855|gb|EFA91262.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
          Length = 394

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 20/126 (15%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSV 244
            F   +   N  +LE            +L ++C  G FS+   R   + V +V+ +  +V
Sbjct: 204 GFF-VDQRENRTLLEK-----YAKNRSVLNMFCYTGGFSVYAMRGGAKLVHSVDSSAKAV 257

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           E    NI  N  ++ +        F             K +D H  ++  + +DPP    
Sbjct: 258 ELTNANIKLNFPSDARHAAFCDDAF-------------KYLDAHDAQYDLVVLDPPAFAK 304

Query: 305 DDATVG 310
             A + 
Sbjct: 305 HRAALR 310


>gi|158313747|ref|YP_001506255.1| methyltransferase type 11 [Frankia sp. EAN1pec]
 gi|158109152|gb|ABW11349.1| Methyltransferase type 11 [Frankia sp. EAN1pec]
          Length = 304

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 176 RTLIYRQIENSFTQ--PNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD 232
            T  + ++ N F +      +    +++V        G  ++++ CG+G  SL LA    
Sbjct: 42  FTEFFTELPNEFWRRAATPEMTAADVDFVETRLGLAPGSRIIDVPCGSGRHSLALAERGH 101

Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           RV  V+++  ++E      AA     V+ V    +E   +
Sbjct: 102 RVTGVDLSAEAIE-HARRAAAATGTAVEFVLGDMREIAPS 140


>gi|170733767|ref|YP_001765714.1| methyltransferase type 11 [Burkholderia cenocepacia MC0-3]
 gi|169817009|gb|ACA91592.1| Methyltransferase type 11 [Burkholderia cenocepacia MC0-3]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A +      +L+L CG G+ S  +A H   V+A ++A P +           + NV+ 
Sbjct: 34  ADAVSATPDAAVLDLGCGAGHASFAVAPHVRDVVAYDLAAPMLATVEAAARERGLANVRT 93

Query: 262 VRMSSKEF 269
            +  ++  
Sbjct: 94  QQGPAERL 101


>gi|116811575|emb|CAL25954.1| CG9531 [Drosophila melanogaster]
 gi|116811577|emb|CAL25955.1| CG9531 [Drosophila melanogaster]
 gi|116811581|emb|CAL25957.1| CG9531 [Drosophila melanogaster]
 gi|116811585|emb|CAL25959.1| CG9531 [Drosophila melanogaster]
 gi|116811587|emb|CAL25960.1| CG9531 [Drosophila melanogaster]
 gi|116811595|emb|CAL25964.1| CG9531 [Drosophila melanogaster]
 gi|223966749|emb|CAR93111.1| CG9531-PA [Drosophila melanogaster]
 gi|223966755|emb|CAR93114.1| CG9531-PA [Drosophila melanogaster]
          Length = 323

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 114 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 172

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V   + E         E   L D+ +   ++  
Sbjct: 173 TAIERSKAATVLAAENAKMLGLLNRFEVHNHTME---------EDKYLPDV-LKDKKYDL 222

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 223 IISNPP 228


>gi|116811583|emb|CAL25958.1| CG9531 [Drosophila melanogaster]
          Length = 323

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 114 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 172

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V   + E         E   L D+ +   ++  
Sbjct: 173 TAIERSKAATVLAAENAKMLGLLNRFEVHNHTME---------EDKYLPDV-LKDKKYDL 222

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 223 IISNPP 228


>gi|116811591|emb|CAL25962.1| CG9531 [Drosophila melanogaster]
          Length = 323

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 114 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 172

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V   + E         E   L D+ +   ++  
Sbjct: 173 TAIERSKAATVLAAENAKMLGLLNRFEVHNHTME---------EDKYLPDV-LKDKKYDL 222

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 223 IISNPP 228


>gi|110806296|ref|YP_689815.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella flexneri 5 str. 8401]
 gi|110615844|gb|ABF04511.1| putative adenine-specific methylase [Shigella flexneri 5 str. 8401]
 gi|323944843|gb|EGB40909.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H120]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|323936620|gb|EGB32907.1| protein-(glutamine-N5) methyltransferase [Escherichia coli E1520]
 gi|323940973|gb|EGB37160.1| protein-(glutamine-N5) methyltransferase [Escherichia coli E482]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|38704076|ref|NP_311241.2| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168748186|ref|ZP_02773208.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755089|ref|ZP_02780096.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168761225|ref|ZP_02786232.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168767963|ref|ZP_02792970.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168772937|ref|ZP_02797944.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168780193|ref|ZP_02805200.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168787244|ref|ZP_02812251.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC869]
 gi|168798507|ref|ZP_02823514.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC508]
 gi|195935710|ref|ZP_03081092.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208809728|ref|ZP_03252065.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814004|ref|ZP_03255333.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821799|ref|ZP_03262119.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209400438|ref|YP_002271740.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217327637|ref|ZP_03443720.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254794223|ref|YP_003079060.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261223215|ref|ZP_05937496.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259235|ref|ZP_05951768.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|187771349|gb|EDU35193.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188017230|gb|EDU55352.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189002135|gb|EDU71121.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357616|gb|EDU76035.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189363009|gb|EDU81428.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189368252|gb|EDU86668.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189372815|gb|EDU91231.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC869]
 gi|189378909|gb|EDU97325.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC508]
 gi|208729529|gb|EDZ79130.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208735281|gb|EDZ83968.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741922|gb|EDZ89604.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209161838|gb|ACI39271.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217320004|gb|EEC28429.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254593623|gb|ACT72984.1| ribosomal protein L3 N5-glutamine methyltransferase [Escherichia
           coli O157:H7 str. TW14359]
 gi|320192045|gb|EFW66690.1| Ribosomal protein L3 methyltransferase [Escherichia coli O157:H7
           str. EC1212]
 gi|320641158|gb|EFX10637.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. G5101]
 gi|320646374|gb|EFX15297.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H- str. 493-89]
 gi|320651644|gb|EFX20024.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H- str. H 2687]
 gi|320657395|gb|EFX25197.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662930|gb|EFX30254.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667674|gb|EFX34585.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326339683|gb|EGD63494.1| Ribosomal protein L3 methyltransferase [Escherichia coli O157:H7
           str. 1125]
 gi|326344145|gb|EGD67906.1| Ribosomal protein L3 methyltransferase [Escherichia coli O157:H7
           str. 1044]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|83593134|ref|YP_426886.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83576048|gb|ABC22599.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 216

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ C +G  S VLAR    V+A+E        A  N+A   ++N  +V          
Sbjct: 81  VLDIGCASGYSSAVLARMASTVVALECDGELAAKAMANLAELGLDNAVVVSG-------- 132

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
                    L+D       +  I ++     +  A    +     ++ +
Sbjct: 133 --------PLRDGYAKQAPYDVIVINGAIPAVPAALKHQLADGGRLVAV 173


>gi|24113702|ref|NP_708212.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella flexneri 2a str. 301]
 gi|30063756|ref|NP_837927.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella flexneri 2a str. 2457T]
 gi|24052771|gb|AAN43919.1| putative adenine-specific methylase [Shigella flexneri 2a str. 301]
 gi|30042011|gb|AAP17737.1| putative adenine-specific methylase [Shigella flexneri 2a str.
           2457T]
 gi|281601772|gb|ADA74756.1| putative adenine-specific methylase [Shigella flexneri 2002017]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|76801241|ref|YP_326249.1| S-adenosylmethionine-dependent methyltransferase 3 [Natronomonas
           pharaonis DSM 2160]
 gi|76557106|emb|CAI48680.1| homolog 3 to S-adenosylmethionine-dependent methyltransferase 3
           [Natronomonas pharaonis DSM 2160]
          Length = 236

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 200 EWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           E VL A   + G  +LE+ CG G F+++LA     ++ ++I++  +E  R    A  V  
Sbjct: 34  EAVLDALAPVDGKRILEVACGTGRFTVMLAERGADIVGMDISEAMLEQGRAKARAAGVEE 93

Query: 258 NVKIVRMSSKEF------TQAMRREREFNRLKDID 286
            +  ++  +           A+   R F+   D +
Sbjct: 94  TLSFLQGDAGRLPFPDNHFDAVFAMRFFHLAPDPE 128


>gi|157155888|ref|YP_001463675.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli E24377A]
 gi|218690490|ref|YP_002398702.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli ED1a]
 gi|218700806|ref|YP_002408435.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli IAI39]
 gi|293446667|ref|ZP_06663089.1| protein-(glutamine-N5) methyltransferase [Escherichia coli B088]
 gi|307311109|ref|ZP_07590753.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli W]
 gi|309784960|ref|ZP_07679593.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella dysenteriae 1617]
 gi|331673831|ref|ZP_08374594.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA280]
 gi|157077918|gb|ABV17626.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli E24377A]
 gi|218370792|emb|CAR18605.1| N5-glutamine methyltransferase [Escherichia coli IAI39]
 gi|218428054|emb|CAR08973.2| N5-glutamine methyltransferase [Escherichia coli ED1a]
 gi|291323497|gb|EFE62925.1| protein-(glutamine-N5) methyltransferase [Escherichia coli B088]
 gi|306908615|gb|EFN39112.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli W]
 gi|308927330|gb|EFP72804.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella dysenteriae 1617]
 gi|315061623|gb|ADT75950.1| N5-glutamine methyltransferase [Escherichia coli W]
 gi|320196199|gb|EFW70823.1| Ribosomal protein L3 methyltransferase [Escherichia coli WV_060327]
 gi|323184350|gb|EFZ69726.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli 1357]
 gi|323377796|gb|ADX50064.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli KO11]
 gi|331069104|gb|EGI40496.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli TA280]
 gi|333001475|gb|EGK21043.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri VA-6]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|107023364|ref|YP_621691.1| methyltransferase type 11 [Burkholderia cenocepacia AU 1054]
 gi|116690447|ref|YP_836070.1| methyltransferase type 11 [Burkholderia cenocepacia HI2424]
 gi|105893553|gb|ABF76718.1| Methyltransferase type 11 [Burkholderia cenocepacia AU 1054]
 gi|116648536|gb|ABK09177.1| Methyltransferase type 11 [Burkholderia cenocepacia HI2424]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A +      +L+L CG G+ S  +A H   V+A ++A P +           + NV+ 
Sbjct: 34  ADAVSATPDAAVLDLGCGAGHASFAVAPHVRDVVAYDLAAPMLATVEAAARERGLANVRT 93

Query: 262 VRMSSKEF 269
            +  ++  
Sbjct: 94  QQGPAERL 101


>gi|327440959|dbj|BAK17324.1| ribosomal protein L11 methylase [Solibacillus silvestris StLB046]
          Length = 312

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 97/259 (37%), Gaps = 21/259 (8%)

Query: 51  IWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYL 110
           I H+      ++ D +  ++ RID F      I AL  E     +   +++A L    +L
Sbjct: 21  ILHEAGASGVVIEDSKELDKERIDKFGE----IYALNPE--DFPKTGVIVKAYLSASSFL 74

Query: 111 TSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC---LDRDYV 167
               ++  + +      D    E  + L + +    +        +  KI          
Sbjct: 75  AETIEEIKLAIANLVNFDINIGENVLTLCE-VDEEDWSTAWKQYYHPVKISERFTIVPTW 133

Query: 168 DERLTVAGRTLIYRQIEN-SF---TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
           ++   V+   LI       +F   T P   + +  LE V+         ++++  G+G  
Sbjct: 134 EDYKPVSTDELIIELDPGMAFGTGTHPTTVMCLQALEKVVQH----DHTVVDVGTGSGVL 189

Query: 224 SLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNR 281
           S+  A      V A+++ + +V AAR N+  N +++ V++   +  +  +        N 
Sbjct: 190 SIGAAMLGAKSVHALDLDEVAVNAARENVELNKMSDIVEVFHGNLLDTVKEPADIVVANI 249

Query: 282 LKDIDIHSYRFKTIFVDPP 300
           L +I I S+      +  P
Sbjct: 250 LAEI-IMSFTDDAFSIVKP 267


>gi|320182012|gb|EFW56917.1| S-adenosylmethionine-dependent methyltransferase [Shigella boydii
           ATCC 9905]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+       V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEEKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|325107094|ref|YP_004268162.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Planctomyces brasiliensis DSM 5305]
 gi|324967362|gb|ADY58140.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Planctomyces brasiliensis DSM 5305]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 20/184 (10%)

Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGR-TLI 179
           L    LL  A +   I+L    H    +          K  + R+ V   +      +L 
Sbjct: 47  LESEILLAHAQKCPRIQLYANYHTVVSEETRAQMRELVKRRVRREPVAYLVGHKEFYSLE 106

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHF--DRVLA 236
           +      F  P       ++   L     ++   +LEL  G+G  ++ LA+     RV+A
Sbjct: 107 FAVEPGVFI-PRPE-TETLINQGLEKLTPVERPHILELCTGSGCIAVTLAKRLPKARVIA 164

Query: 237 VEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           VE     +  +R N   + V++   +               E +    +     RF  I 
Sbjct: 165 VEKNPIPLRVSRSNAEKHQVDDRVQI--------------LEGDLFAPVPTDGPRFDLIV 210

Query: 297 VDPP 300
            +PP
Sbjct: 211 SNPP 214


>gi|301632871|ref|XP_002945503.1| PREDICTED: 3-demethylubiquinone-9 3-methyltransferase-like [Xenopus
           (Silurana) tropicalis]
          Length = 236

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 40/105 (38%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   LEW+          +L++ CG G  +  +AR    V  ++++  ++  A+ + 
Sbjct: 33  HQINPLRLEWLCGLAPLGGQKVLDVGCGGGILADSMARKGADVTGIDLSTKALRIAQLHA 92

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
                 +++   +S++          +     ++  H     ++ 
Sbjct: 93  LETQTPSIQYREISAEALAAEQPDPFDIVTCMEMLEHVPDPASVV 137


>gi|298292309|ref|YP_003694248.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Starkeya novella DSM 506]
 gi|296928820|gb|ADH89629.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Starkeya novella DSM 506]
          Length = 329

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 65/191 (34%), Gaps = 30/191 (15%)

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK--ICLDRDYVDERLTVAG 175
           IV    H  +DD       +L      R   +       +      L R Y+     V  
Sbjct: 58  IVLESLHLPIDDLSPWLDAKLTGEERTRLAGLIDARCETRQPAAYLLGRTYIQ---GVPF 114

Query: 176 RTLIYRQIENSFTQPNAGINVHMLE----WVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           R+     +  SF      +    L     + L         +L+L  G+G  +++ A  F
Sbjct: 115 RSDKRAIVPRSFI---GELLAAELAGGDPFALVPEPMAITRVLDLCTGSGCLAILAAMIF 171

Query: 232 --DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V AV+++  ++  A  N+A + + +   VR+   +  +A+  E             
Sbjct: 172 PNAEVDAVDLSPDALALAAENVAEHEMGD--RVRLVEGDLFEALAGE------------- 216

Query: 290 YRFKTIFVDPP 300
             +  I  +PP
Sbjct: 217 -VYDLIITNPP 226


>gi|282934675|ref|ZP_06339918.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           208-1]
 gi|281301250|gb|EFA93551.1| ribosomal protein L11 methyltransferase [Lactobacillus jensenii
           208-1]
          Length = 315

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAV-EIAKPSVEAARYNIA 252
              ++   L  +      +L++  G+G  ++  ++   + VLA  +I+  +V AA  NIA
Sbjct: 162 TTQLVMMALERSMTKPAKVLDVGTGSGILAIAASKLGAESVLATTDISDEAVTAANENIA 221

Query: 253 ANHVNNVKIVRMS 265
            N +NN+K+++ +
Sbjct: 222 LNKLNNIKVIKAN 234


>gi|302549281|ref|ZP_07301623.1| methyltransferase type 12 [Streptomyces viridochromogenes DSM
           40736]
 gi|302466899|gb|EFL29992.1| methyltransferase type 12 [Streptomyces viridochromogenes DSM
           40736]
          Length = 275

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 10/122 (8%)

Query: 201 WVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           W       + G D+L L C  G  ++  AR   R + ++I++ SV AA    A    + V
Sbjct: 45  WEWEDLGELTGRDVLHLQCHLGTETIAFARRGARAVGLDISEASVTAANDIAARAGAD-V 103

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
             VR +  +  +A+   R        D+       +   P      +    +++     L
Sbjct: 104 TYVRANVYDAVEALDERR-------FDVVYTGKGALCYLPDLDRWAETVGRLLRPGGR-L 155

Query: 320 YI 321
           Y+
Sbjct: 156 YV 157


>gi|255513476|gb|EET89742.1| methylase [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 196

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 31/134 (23%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           + E + + G   +Y   E+S          +ML  ++       G +L+L  G G   +V
Sbjct: 15  IYESVKITGCRGVYYPAEDS----------YMLAKIVERKAF--GKVLDLGTGTGIQGIV 62

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
            A+    V   +I++ +++ A  N   N V+                 R   F+++K   
Sbjct: 63  AAKAGCEVYFSDISENALQCAEKNAELNGVHGR-------------FLRSDLFSKVK--- 106

Query: 287 IHSYRFKTIFVDPP 300
               RF TI  +PP
Sbjct: 107 ---GRFNTIIFNPP 117


>gi|229470432|sp|B0TR07|RLMG_SHEHH RecName: Full=Ribosomal RNA large subunit methyltransferase G;
           AltName: Full=23S rRNA m2G1835 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmG
          Length = 421

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 17/104 (16%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA--VEIAKPSVEAARYNIAANHVNNV 259
           +    KG    +++L CGNG   L   + F       ++ ++ +V +AR N A N ++N 
Sbjct: 225 LDNMPKGDFKSIVDLGCGNGILGLHAKQVFPEAYIHFIDDSEMAVASARENWALNKLDN- 283

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIH---SYRFKTIFVDPP 300
                       A+  E+      D   H    +R   I  +PP
Sbjct: 284 -----------PALVGEQATFGWDDCLTHMSEGFRPDLILCNPP 316


>gi|284031474|ref|YP_003381405.1| modification methylase, HemK family [Kribbella flavida DSM 17836]
 gi|283810767|gb|ADB32606.1| modification methylase, HemK family [Kribbella flavida DSM 17836]
          Length = 262

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
             H+++  +A  +     +++L CG+G   L LA       + A ++   +V+ AR N+A
Sbjct: 78  TEHLVDEAIARCRP-GAVVVDLCCGSGALGLALASAVPGTELSATDVHPAAVQNARRNLA 136


>gi|226356404|ref|YP_002786144.1| rRNA (guanine-N(2)-)-methyltransferase [Deinococcus deserti VCD115]
 gi|226318394|gb|ACO46390.1| putative rRNA (guanine-N(2)-)-methyltransferase [Deinococcus
           deserti VCD115]
          Length = 402

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 23/129 (17%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
                ML+ ++      +  +L+L CG G      A     V  V+    SV +A+  + 
Sbjct: 247 KATTLMLDHLVDLQLQGR-TVLDLGCGTGLIGAWAALRGAHVTLVDGDLLSVRSAQATLV 305

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDAT 308
           A+ +   ++V                     D ++    F  I  +PP    R  + D  
Sbjct: 306 ASGLGG-EVVHSDV-----------------DAELGDRTFDVILTNPPFHVGRGVVLDVA 347

Query: 309 VGMVQAYPH 317
              + A   
Sbjct: 348 REFIAAASR 356


>gi|167625103|ref|YP_001675397.1| rRNA (guanine-N(2)-)-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
 gi|167355125|gb|ABZ77738.1| rRNA (guanine-N(2)-)-methyltransferase [Shewanella halifaxensis
           HAW-EB4]
          Length = 432

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 17/104 (16%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA--VEIAKPSVEAARYNIAANHVNNV 259
           +    KG    +++L CGNG   L   + F       ++ ++ +V +AR N A N ++N 
Sbjct: 236 LDNMPKGDFKSIVDLGCGNGILGLHAKQVFPEAYIHFIDDSEMAVASARENWALNKLDN- 294

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIH---SYRFKTIFVDPP 300
                       A+  E+      D   H    +R   I  +PP
Sbjct: 295 -----------PALVGEQATFGWDDCLTHMSEGFRPDLILCNPP 327


>gi|115715496|ref|XP_001179975.1| PREDICTED: similar to TRM5 tRNA methyltransferase 5 homolog (S.
           cerevisiae) [Strongylocentrotus purpuratus]
 gi|115955786|ref|XP_001189994.1| PREDICTED: similar to TRM5 tRNA methyltransferase 5 homolog (S.
           cerevisiae) [Strongylocentrotus purpuratus]
          Length = 453

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQ 271
           + +++ G G F++  A+    V A ++   S      N   N + + +K   +  ++F  
Sbjct: 241 VYDMFAGVGPFAIPAAKKGCEVHANDLNPESFRWLELNAKQNKLSSRLKASNLDGRQFAV 300

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDP 299
            + +     + K+     Y+   I   P
Sbjct: 301 DVVKPDLIIKAKE--GFKYKAHIIMNLP 326


>gi|86157885|ref|YP_464670.1| type 11 methyltransferase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774396|gb|ABC81233.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 295

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
            +L++ CG G+ +++LA H  RV AV+I+  S+E AR   A   +    + V    +
Sbjct: 65  RILDVGCGLGDNAILLASHGARVTAVDISARSIELARRRAAQAGLAEPPEFVCAPLE 121


>gi|82777741|ref|YP_404089.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Shigella dysenteriae Sd197]
 gi|81241889|gb|ABB62599.1| putative adenine-specific methylase [Shigella dysenteriae Sd197]
          Length = 421

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 183 EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 236

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 237 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 286

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 287 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 320


>gi|254247509|ref|ZP_04940830.1| SAM-dependent methyltransferase [Burkholderia cenocepacia PC184]
 gi|124872285|gb|EAY64001.1| SAM-dependent methyltransferase [Burkholderia cenocepacia PC184]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A +      +L+L CG G+ S  +A H   V+A ++A P +           + NV+ 
Sbjct: 34  ADAVSATPDAAVLDLGCGAGHASFAVAPHVRDVVAYDLAAPMLATVEAAARERGLANVRT 93

Query: 262 VRMSSKEF 269
            +  ++  
Sbjct: 94  QQGPAERL 101


>gi|193062223|ref|ZP_03043318.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli E22]
 gi|194429280|ref|ZP_03061807.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli B171]
 gi|218548215|ref|YP_002382006.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia fergusonii ATCC 35469]
 gi|218559243|ref|YP_002392156.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli S88]
 gi|260844918|ref|YP_003222696.1| N5-glutamine methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|300918497|ref|ZP_07135090.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 115-1]
 gi|331684003|ref|ZP_08384599.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H299]
 gi|192931889|gb|EDV84488.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli E22]
 gi|194412688|gb|EDX28983.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli B171]
 gi|218355756|emb|CAQ88369.1| N5-glutamine methyltransferase [Escherichia fergusonii ATCC 35469]
 gi|218366012|emb|CAR03756.1| N5-glutamine methyltransferase [Escherichia coli S88]
 gi|257760065|dbj|BAI31562.1| N5-glutamine methyltransferase [Escherichia coli O103:H2 str.
           12009]
 gi|294493265|gb|ADE92021.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli IHE3034]
 gi|300414311|gb|EFJ97621.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 115-1]
 gi|307626133|gb|ADN70437.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Escherichia coli UM146]
 gi|315288305|gb|EFU47704.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli MS 110-3]
 gi|323162221|gb|EFZ48081.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli E128010]
 gi|323170399|gb|EFZ56052.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli LT-68]
 gi|323952123|gb|EGB47997.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H252]
 gi|323955852|gb|EGB51607.1| protein-(glutamine-N5) methyltransferase [Escherichia coli H263]
 gi|324112867|gb|EGC06843.1| protein-(glutamine-N5) methyltransferase [Escherichia fergusonii
           B253]
 gi|331078955|gb|EGI50157.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli H299]
 gi|332754980|gb|EGJ85345.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri 4343-70]
 gi|333001804|gb|EGK21370.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri K-218]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|296446622|ref|ZP_06888563.1| ribosomal protein L11 methylase-like protein [Methylosinus
           trichosporium OB3b]
 gi|296255850|gb|EFH02936.1| ribosomal protein L11 methylase-like protein [Methylosinus
           trichosporium OB3b]
          Length = 364

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++++  G+G  S + AR   +V A+E A   ++ AR   A N + NV+ +  +S++ T
Sbjct: 75  VVDIGAGSGILSFLAARSAQKVYAIEHADV-IDMARRIGADNGIGNVEFIARNSRDVT 131


>gi|295695862|ref|YP_003589100.1| ribosomal protein L11 methyltransferase [Bacillus tusciae DSM 2912]
 gi|295411464|gb|ADG05956.1| ribosomal protein L11 methyltransferase [Bacillus tusciae DSM 2912]
          Length = 348

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 4/120 (3%)

Query: 169 ERLTVAGRTLIYRQIEN-SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           E        ++ R     +F           L W+L         +L++ CG+G  S+  
Sbjct: 170 ETYMPELGEVVVRIDPGVAFGTGTHETTRLCLGWLLDEVTP-GCRVLDVGCGSGILSVSA 228

Query: 228 AR-HFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A     RVLAV++   +V+AAR+N+      + V++ R    +  +        N L D+
Sbjct: 229 AALGAGRVLAVDLDSLAVDAARHNVEVAGVADRVEVRRGDLLDGIEERGDLIVANLLADL 288


>gi|302542527|ref|ZP_07294869.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302460145|gb|EFL23238.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces himastatinicus ATCC 53653]
          Length = 281

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 34/136 (25%)

Query: 181 RQIENSFT-----QPNAGI------NVHMLEWVLAATKG---IQGDLLELYCGNGNFSLV 226
                +F      Q   G+         ++ W + A +    ++  +++L  G+G  +L 
Sbjct: 69  HITGRAFFRYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPLIVDLCTGSGAIALA 128

Query: 227 LARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
           LA+     RV AVE+ + ++  AR N+  + V                ++R      L +
Sbjct: 129 LAQEVPRSRVHAVELDEGALLWARKNVEGSRV---------------VLQRGDALTALPE 173

Query: 285 IDIHSYRFKTIFVDPP 300
           +D    +   +  +PP
Sbjct: 174 LD---GQVDLVISNPP 186


>gi|257056168|ref|YP_003134000.1| methyltransferase family protein [Saccharomonospora viridis DSM
           43017]
 gi|256586040|gb|ACU97173.1| methyltransferase family protein [Saccharomonospora viridis DSM
           43017]
          Length = 199

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 8/120 (6%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             ++ A       +L+  CG G     L R    V+ V++    +EAA            
Sbjct: 37  ARLIDAMVARGSRILDAGCGPGRVGGALHRRGHTVVGVDVDPELIEAAEQ-----DHPGP 91

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           + V         A   E E     D+ +                +     G V+    I+
Sbjct: 92  RWVVGDLAAIDLAALGEEEPF---DLAVVPGNVMVFLAPDSERAVLRNLAGCVRTGGRIV 148


>gi|255549036|ref|XP_002515574.1| conserved hypothetical protein [Ricinus communis]
 gi|223545518|gb|EEF47023.1| conserved hypothetical protein [Ricinus communis]
          Length = 544

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N+ +    +  V     G    + +++ G G F++  A+    V A ++   S +  + N
Sbjct: 247 NSRLEHEHIRLVSQFQPG--DTICDMFAGIGPFAIPAAQKGCVVYANDLNPDSFQYLKIN 304

Query: 251 IAANHVNNVKI-VRMSSKEFT 270
              N V+++     M ++ F 
Sbjct: 305 AKLNKVDDLIFAYNMDARTFI 325


>gi|195435395|ref|XP_002065677.1| GK15575 [Drosophila willistoni]
 gi|194161762|gb|EDW76663.1| GK15575 [Drosophila willistoni]
          Length = 221

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 7/136 (5%)

Query: 195 NVHMLEWVLAATK-GIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIA 252
            + +++W++   +      +L+L CGNG F + LA     ++  V+ +  ++E A  NIA
Sbjct: 43  QIRIVDWLMEQDQVEQSARVLDLGCGNGMFLVALANEGYKQLTGVDYSPKAIELA-KNIA 101

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATV 309
            N   ++        +   +  +    +     D  +Y   ++  D P   RS       
Sbjct: 102 ENLKLDINYSVADLTQSLDSQEQLDLGSFQVVHDKGTYDAISLCPDNPKEKRSQYLATVE 161

Query: 310 GMVQAYPHILYI-SCN 324
            ++     +  I SCN
Sbjct: 162 KLLTDKDSLFIITSCN 177


>gi|229917426|ref|YP_002886072.1| methyltransferase small [Exiguobacterium sp. AT1b]
 gi|229468855|gb|ACQ70627.1| methyltransferase small [Exiguobacterium sp. AT1b]
          Length = 245

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 209 IQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
            +G L++L  G G   L L+ R    +  VEI    V+ A  ++A NH+   +++V+   
Sbjct: 45  QKGQLVDLCAGTGAIPLFLSYRTKGTITGVEIQSKLVDMANRSMAVNHLEERIRVVKGDV 104

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           K     +   R              +  I  +PP    ++ ++ 
Sbjct: 105 KTAAAQLGHAR--------------YDVITCNPPYFLANETSLR 134


>gi|217977726|ref|YP_002361873.1| ubiquinone biosynthesis O-methyltransferase [Methylocella
           silvestris BL2]
 gi|254789993|sp|B8EI29|UBIG_METSB RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|217503102|gb|ACK50511.1| ubiquinone biosynthesis O-methyltransferase [Methylocella
           silvestris BL2]
          Length = 256

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV------NNVKIVRMS 265
            +L+  CG G  +  LAR   RV A++ A  ++E AR +   + +        ++ +   
Sbjct: 75  RILDAGCGAGLLAEPLARLGARVTAIDPAPRNIEVARRHAEKSGLSIDYRMTTIEALSGE 134

Query: 266 SKEFTQAMRREREFNRL 282
           +  F   +  E   + L
Sbjct: 135 AATFDAVLAMEVLEHVL 151


>gi|118594544|ref|ZP_01551891.1| possible N6-adenine-specific methylase [Methylophilales bacterium
           HTCC2181]
 gi|118440322|gb|EAV46949.1| possible N6-adenine-specific methylase [Methylophilales bacterium
           HTCC2181]
          Length = 181

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 16/93 (17%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G G      L+R+    + +E  K + E    N       N  I+  S++ F   
Sbjct: 54  LDLFAGTGALGFEALSRNARSCVMIEKNKSTYEDLITNKQILGAANATIINCSAESFL-- 111

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
                          ++ +F  IF DPP + L+
Sbjct: 112 -------------IKNAEKFDVIFFDPPFAELE 131


>gi|85714686|ref|ZP_01045673.1| Ribosomal L11 methyltransferase [Nitrobacter sp. Nb-311A]
 gi|85698571|gb|EAQ36441.1| Ribosomal L11 methyltransferase [Nitrobacter sp. Nb-311A]
          Length = 298

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHV 256
           +L+ VL         +L+L  G G  ++  A+   R VLA +I   S   AR N A+N V
Sbjct: 147 LLDQVLRGKMPR--RILDLGAGTGVLAIAAAKASRRNVLASDIDPRSAAVARENAASNGV 204

Query: 257 NNV 259
            N+
Sbjct: 205 GNL 207


>gi|194431576|ref|ZP_03063868.1| SmtA protein [Shigella dysenteriae 1012]
 gi|194420401|gb|EDX36478.1| SmtA protein [Shigella dysenteriae 1012]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+       V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEEKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|328950556|ref|YP_004367891.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450880|gb|AEB11781.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Marinithermus hydrothermalis DSM 14884]
          Length = 276

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 65/217 (29%), Gaps = 23/217 (10%)

Query: 106 QIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD 165
           QI    +Q D A   L  H  L    +    RL   L  R  +  L        I    +
Sbjct: 28  QILRALTQEDAATFWLRRHEPLP---QAVVHRLEAILRERVTRKPL------QLILGTAE 78

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFS 224
           +    L VA   LI R                ++E  L   +      +L++  G+G  +
Sbjct: 79  FFGLVLKVAPGVLIPRPE-----------TEGLVELALELLRDQPAPRVLDVGTGSGAIA 127

Query: 225 LVL--ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
           L L  AR    V A +    +V  AR N A   +    +    +   T           L
Sbjct: 128 LALKHARPDAAVWATDTNPAAVALARQNAARLGLTIEVVEGAFTAGLTGFHLIVSNPPYL 187

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
            +        +  +  P         + +++    + 
Sbjct: 188 PEAYRREAPPELAWEPPSALYAGPEGLDVLRPLARVA 224


>gi|327332267|gb|EGE74003.1| putative methyltransferase small domain protein [Propionibacterium
           acnes HL097PA1]
          Length = 206

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 20/112 (17%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G  L+L CG G  +  LAR      ++AV++   +++    N     V + ++  
Sbjct: 63  PPPSNGTFLDLGCGYGPIACALARACPGSHIVAVDVNDLAIDLTTRNAKVLRVGD-RVHA 121

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
              +E    +R                 F  I+ +PP      A   ++  +
Sbjct: 122 CRPEEVDPDLR-----------------FDEIWSNPPIRVGKAALHEILTTW 156


>gi|325912058|ref|ZP_08174456.1| ribosomal protein L11 methyltransferase [Lactobacillus iners UPII
           143-D]
 gi|325476008|gb|EGC79176.1| ribosomal protein L11 methyltransferase [Lactobacillus iners UPII
           143-D]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
             I   ++  V+      +  +L++  G+G  S+V ++    +V A +I+  ++ +A+ N
Sbjct: 155 THITTQLMLMVMERVLISEMSVLDVGTGSGILSIVASKFGASKVCATDISDDAIASAKKN 214

Query: 251 IAANHVNNVK 260
           +A N ++NV+
Sbjct: 215 LALNDIDNVE 224


>gi|323967772|gb|EGB63184.1| protein-(glutamine-N5) methyltransferase [Escherichia coli M863]
 gi|323977468|gb|EGB72554.1| protein-(glutamine-N5) methyltransferase [Escherichia coli TW10509]
 gi|327252601|gb|EGE64260.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Escherichia coli STEC_7v]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|318040241|ref|ZP_07972197.1| precorrin-6B methylase [Synechococcus sp. CB0101]
          Length = 204

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 6/114 (5%)

Query: 163 DRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
           D  +  + +T       +         P       ML  +          + ++  G G 
Sbjct: 6   DGPFQWDFVTPGLPDAAFADAPG--FSPTPLELRVML--LAHLRPRPDSLVWDVGGGTGA 61

Query: 223 FSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMR 274
            +L +AR     +V  +E    ++E  + N       N+ I    + E    + 
Sbjct: 62  LALEIARLMPAGQVHTLERDPEAIELLKRNARRFGATNLHIHAGDAPEGLTQLP 115


>gi|255067817|ref|ZP_05319672.1| RNA methyltransferase, RsmD family [Neisseria sicca ATCC 29256]
 gi|255047908|gb|EET43372.1| RNA methyltransferase, RsmD family [Neisseria sicca ATCC 29256]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 65/173 (37%), Gaps = 31/173 (17%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
            +N+ +I   +    + +      L  R   +S       +   +  W+     G+  + 
Sbjct: 7   HSNQVRIIGGQCRGRKLVFADADGL--RPTPDS-------VREKLFNWLGQDLTGL--NA 55

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G       +R+  RV+  +  + + +  R N  A  ++ ++I+      + Q 
Sbjct: 56  LDLFAGSGALGFEAASRNAKRVVLADNNRKTADMLRQNARALGLDKLEILNTDGLAYLQR 115

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD----DATVGMVQAYPHILYI 321
                           S +F  +F+DPP +  D     A++        ++YI
Sbjct: 116 ---------------SSEKFDVVFLDPPFAWQDWENLFASLKNSLKNGAMVYI 153


>gi|206901460|ref|YP_002250835.1| putative L-glutaminyl-2-N-methyltransferase StsG [Dictyoglomus
           thermophilum H-6-12]
 gi|206740563|gb|ACI19621.1| putative L-glutaminyl-2-N-methyltransferase StsG [Dictyoglomus
           thermophilum H-6-12]
          Length = 252

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 16/93 (17%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+L CG G  +L L +   R + ++ ++  +E A+     + V NV+   M        
Sbjct: 48  ILDLGCGFGRHTLELGKRGYRTIGIDRSEDLIEIAKEEAKKDRVFNVEFYVM-------- 99

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
                     KDI+   Y+F  +F      GL 
Sbjct: 100 --------EYKDIEKLGYKFDVVFSLYTSFGLS 124


>gi|167585803|ref|ZP_02378191.1| Methyltransferase type 11 [Burkholderia ubonensis Bu]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+ +  A +   G  +L+L CG G+ S  +A H   V+A ++A   +             
Sbjct: 30  LQALADAVRATPGAAVLDLGCGAGHASFAVAPHAREVVAYDLAPQMLATVDAAARERGFA 89

Query: 258 NVKIVRMSSKEF 269
           N++     ++  
Sbjct: 90  NIRTCHGPAERL 101


>gi|150403245|ref|YP_001330539.1| hypothetical protein MmarC7_1325 [Methanococcus maripaludis C7]
 gi|150034275|gb|ABR66388.1| protein of unknown function Met10 [Methanococcus maripaludis C7]
          Length = 342

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +++++CG G +S+   ++ +++ +++I    +E  + NI  N + N
Sbjct: 204 VVDMFCGVGPYSIAC-KNAEKIYSIDINPDGIELLKQNIVLNGLEN 248


>gi|116811579|emb|CAL25956.1| CG9531 [Drosophila melanogaster]
          Length = 323

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 114 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 172

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V   + E         E   L D+ +   ++  
Sbjct: 173 TAIERSKAATVLAAENAKMLGLLNRFEVHNHTME---------EDKYLPDV-LKDKKYDL 222

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 223 IISNPP 228


>gi|221134300|ref|ZP_03560605.1| PUA domain-containing protein [Glaciecola sp. HTCC2999]
          Length = 394

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 11/101 (10%)

Query: 203 LAATKGIQGDLLELYCGNGNF-SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           ++A      D+L  +C  G F +  L      V  V++++P+++ A+ +I  NH+   + 
Sbjct: 212 ISAQYMEGADVLNCFCYTGTFATYALKYGAKHVTNVDVSQPALDIAKAHIELNHLPMAQ- 270

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                        ++  F  L++       F  I +DPP+ 
Sbjct: 271 ---------ATFIKQDVFELLREYAQSDKMFDHIVLDPPKF 302


>gi|91787548|ref|YP_548500.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Polaromonas sp. JS666]
 gi|91696773|gb|ABE43602.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Polaromonas sp. JS666]
          Length = 233

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ V          +LE+  G+G  + +LA    +V+ +EI     + AR N+
Sbjct: 71  PKVEARILQDVAVQKHE---KVLEIGAGSGYMAALLAHRAQQVITLEIDPTLAQMARSNL 127

Query: 252 AANHVNNVKIVRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
               + N ++     +    QA+      +   D+ + S     +
Sbjct: 128 QKAGLYNAEVRTGDGAANLAQAVSSNDPLHGPFDVIVLSGSVAEV 172


>gi|33152003|ref|NP_873356.1| protein-glutamine N-methyl transferase [Haemophilus ducreyi
           35000HP]
 gi|33148225|gb|AAP95745.1| Protein-glutamine N-methyl transferase [Haemophilus ducreyi
           35000HP]
          Length = 290

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 21/117 (17%)

Query: 199 LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAAN 254
           L+W     +      +L+L  G G  +L LA        + AV+I   +V  A  N    
Sbjct: 109 LDWAYKRLEQQTNLHILDLGTGTGAIALALASELGDKAVITAVDIKAEAVSLAEENRQHL 168

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               V  ++               FN L      S +F  I  +PP     D  + +
Sbjct: 169 GFKQVTFLQSD------------WFNAL-----QSQQFDLIVSNPPYIDKTDENLKL 208


>gi|89073798|ref|ZP_01160305.1| hypothetical protein SKA34_16735 [Photobacterium sp. SKA34]
 gi|89050333|gb|EAR55834.1| hypothetical protein SKA34_16735 [Photobacterium sp. SKA34]
          Length = 201

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G  S   L+R  + V  +E+ K +      N+ 
Sbjct: 48  VKETLFNWLAQDIY--QSKCLDLFAGSGGLSFEALSRGAESVTMLELDKKAANQLEQNLK 105

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                N  +V   S  F                         +F+DPP R  L    +  
Sbjct: 106 TVGAKNATVVNGDSLTFLSQ---------------QGRAHDLVFIDPPFRKDLIQDVIAA 150

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 151 LENNGWLAPHAMIYI 165


>gi|332675655|gb|AEE72471.1| protein methyltransferase HemK [Propionibacterium acnes 266]
          Length = 245

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 33  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGACPSVIDLCTGTGAIALAV 89

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+  +    V+++   +       RR          
Sbjct: 90  ASEVPGSRVSAVEVDDAALTWTRRNLCDSG---VEVLAGDALRVPDDGRR---------- 136

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 137 ------FDVVVTNPP 145


>gi|288958791|ref|YP_003449132.1| tRNA/rRNA cytosine-C5-methylase [Azospirillum sp. B510]
 gi|288911099|dbj|BAI72588.1| tRNA/rRNA cytosine-C5-methylase [Azospirillum sp. B510]
          Length = 474

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 67/177 (37%), Gaps = 33/177 (18%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAA 253
            M+   +A   G Q  +++   G G  +L +A   ++  RV+A ++    ++ A      
Sbjct: 236 QMVALAVAPKPGHQ--VVDFCAGAGGKTLAVAALMKNKGRVVACDVLDKRLKRAAERFRR 293

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRL---------------KDIDIHSYRFKTIFVD 298
             ++N++   ++S+      R +R+F+R+                D            + 
Sbjct: 294 AGLHNIEAHPLTSERDPWVKRHKRKFDRVLVDAPCSGTGTWRRNPDARWRQLGPGLEQLL 353

Query: 299 PPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRH 355
           P ++ + D+   +V+    ++Y +C   SL  D         +E       F  T H
Sbjct: 354 PLQANILDSAARLVKPGGRLIYATC---SLLHD----ENEAQVEA------FLQTHH 397


>gi|261868605|ref|YP_003256527.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413937|gb|ACX83308.1| 23S rRNA (uracil-5-)-methyltransferase RumB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 56/164 (34%), Gaps = 10/164 (6%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVP---NLQIFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y  QL +K   L+Q +           + F+S+P  +R +A+  I    +  
Sbjct: 14  SCQWLETPYAAQLEQKTAHLQQQLQGLNTSRLTWFKPFQSQPTAFRNKAKMVISGAVERP 73

Query: 59  YHIMF-----DQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQI--DYLT 111
              +       Q   +      +      I  ++ + +A   L P   AK        L 
Sbjct: 74  ILGILPNPQAPQSAVDLCDCPLYPQRFQAIFPILKDFIARAGLVPYNVAKQKGELKHILL 133

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA 155
           ++S  +   ++   L  ++      R   AL  +  Q+ +   +
Sbjct: 134 TESQHSHQLMLRFVLRSESKLPLIRRELPALRQKLPQLAVTSAS 177


>gi|254497856|ref|ZP_05110622.1| protein methyltransferase HemK [Legionella drancourtii LLAP12]
 gi|254352934|gb|EET11703.1| protein methyltransferase HemK [Legionella drancourtii LLAP12]
          Length = 261

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 177 TLIYRQIENSFTQPNAGINVH----------MLEWVLAATKGIQGD-LLELYCGNGNFSL 225
            + Y   E  F   N  +N H          ++E  L          +LEL  G+G  +L
Sbjct: 52  PIAYITGEREFWSLNLKVNRHTLIPRHETELLVELALEKLPNSPNTCILELGTGSGAIAL 111

Query: 226 VLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            LA+      ++A ++++ ++  A+ N   + ++NV      
Sbjct: 112 ALAKERPQWHIVACDVSEEALLIAKENALHHQLSNVTFYHSD 153


>gi|237736824|ref|ZP_04567305.1| methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229420686|gb|EEO35733.1| methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 393

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 26/161 (16%)

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQI-----ENSFTQPNAGINVHMLEWVLAATKGIQG 211
           KT I      + ER+ +    L Y        +  F      ++       +        
Sbjct: 166 KTGIIFGE--IPERVIMEDNGLKYGIDIIDGQKTGFF-----LDQRDSRKFIRKYLNKDT 218

Query: 212 DLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEF 269
             L+++  +G FS+  L  +  +V+A++    ++E  R N   N    N   +   +   
Sbjct: 219 RFLDVFSSSGGFSMAALKENCKKVVAIDKEPHALELCRENYELNGFEGNYTTMEGDA--- 275

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                    F  LK +     ++  I +DPP      A + 
Sbjct: 276 ---------FLLLKTLVGRGEKYDVITLDPPSLIKRKADIH 307


>gi|228985685|ref|ZP_04145838.1| Methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228774080|gb|EEM22493.1| Methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A  N+  + V NV+  
Sbjct: 39  VKERCKLSDTLLDVGTGGGENVLNIASSAKLLIGIDNSNGMIETAHSNLKKSGVQNVEFF 98

Query: 263 RMSSKEFT 270
           +M+S+  T
Sbjct: 99  QMNSEALT 106


>gi|229196752|ref|ZP_04323494.1| Methyltransferase [Bacillus cereus m1293]
 gi|228586660|gb|EEK44736.1| Methyltransferase [Bacillus cereus m1293]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A  N+  + V NV+  
Sbjct: 39  VKERCKLSDTLLDVGTGGGENVLNIASSAKLLIGIDNSNGMIETAHSNLKKSGVQNVEFF 98

Query: 263 RMSSKEFT 270
           +M+S+  T
Sbjct: 99  QMNSEALT 106


>gi|223983552|ref|ZP_03633735.1| hypothetical protein HOLDEFILI_01016 [Holdemania filiformis DSM
           12042]
 gi|223964480|gb|EEF68809.1| hypothetical protein HOLDEFILI_01016 [Holdemania filiformis DSM
           12042]
          Length = 284

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 52/142 (36%), Gaps = 29/142 (20%)

Query: 188 TQPNAGI------NVHMLEWVLA-----ATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            Q N  +         ++  +LA       +    D +++  G+G  +L LA+   ++  
Sbjct: 83  FQVNENVLIPRPETEELVANILADLDEYFAEAKTIDAVDIGTGSGAIALSLAKEEPKIRM 142

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A +I+  +VE A+ N A+  V+ VK +                    + +     +   
Sbjct: 143 SATDISAEAVEVAKANAASLGVD-VKFLVGDMA---------------QPVIDAGMKVDL 186

Query: 295 IFVDPPRSGLDDATVGMVQAYP 316
           +  +PP    ++     V+ Y 
Sbjct: 187 LICNPPYIPQEETLEASVKDYE 208


>gi|222096116|ref|YP_002530173.1| methyltransferase [Bacillus cereus Q1]
 gi|221240174|gb|ACM12884.1| methyltransferase [Bacillus cereus Q1]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A  N+  + V NV+  
Sbjct: 39  VKERCKLSDTLLDVGTGGGENVLNIASSAKLLIGIDNSNGMIETAHSNLKKSGVQNVEFF 98

Query: 263 RMSSKEFT 270
           +M+S+  T
Sbjct: 99  QMNSEALT 106


>gi|212224822|ref|YP_002308058.1| Hypothetical N6-adenine-specific DNA methylase [Thermococcus
           onnurineus NA1]
 gi|212009779|gb|ACJ17161.1| Hypothetical N6-adenine-specific DNA methylase [Thermococcus
           onnurineus NA1]
          Length = 365

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 7/83 (8%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARY 249
           A I   ++E      +   G  ++ +CG+G   + LA   +  +++ +E  +  +  A  
Sbjct: 204 ASIANALIELA----EPDGGSFIDPFCGSGTIPIELALGGYGGKIIGLEKYRKHLRGAEM 259

Query: 250 NIAANHV-NNVKIVRMSSKEFTQ 271
           N  A  V + +  +   +   ++
Sbjct: 260 NALAAGVYDRIDFILGDATRLSE 282


>gi|254428061|ref|ZP_05041768.1| Methyltransferase small domain family [Alcanivorax sp. DG881]
 gi|196194230|gb|EDX89189.1| Methyltransferase small domain family [Alcanivorax sp. DG881]
          Length = 398

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 47/133 (35%), Gaps = 29/133 (21%)

Query: 208 GIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMS 265
                +L+++   G + +  A    + V  V+ ++ + +    N   N   + V  ++  
Sbjct: 219 AKGARVLDVFSYCGGWGVQAALAGAESVTCVDGSEMATDYVHRNAELNGVADTVGSIQGD 278

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS---------------GLDDATVG 310
           +            F  +K +     ++  + +DPP                  +++  + 
Sbjct: 279 A------------FAAMKQLIADGEKYDLVVLDPPAFIKRKKDFKNGLAGYHAINELAMR 326

Query: 311 MVQAYPHILYISC 323
           +V+   +++  SC
Sbjct: 327 LVKPGGYLVSASC 339


>gi|206973590|ref|ZP_03234508.1| methyltransferase [Bacillus cereus H3081.97]
 gi|217960029|ref|YP_002338585.1| methyltransferase [Bacillus cereus AH187]
 gi|206747746|gb|EDZ59135.1| methyltransferase [Bacillus cereus H3081.97]
 gi|217066309|gb|ACJ80559.1| methyltransferase [Bacillus cereus AH187]
          Length = 250

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +     +   LL++  G G   L +A     ++ ++ +   +E A  N+  + V NV+  
Sbjct: 39  VKERCKLSDTLLDVGTGGGENVLNIASSAKLLIGIDNSNGMIETAHSNLKKSGVQNVEFF 98

Query: 263 RMSSKEFT 270
           +M+S+  T
Sbjct: 99  QMNSEALT 106


>gi|161528902|ref|YP_001582728.1| tRNA (guanine-N(2)-)-methyltransferase [Nitrosopumilus maritimus
           SCM1]
 gi|160340203|gb|ABX13290.1| tRNA (guanine-N(2)-)-methyltransferase [Nitrosopumilus maritimus
           SCM1]
          Length = 382

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 14/137 (10%)

Query: 155 ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH---MLEWVLAATKGIQG 211
             KTK+ + +  + E++            E +F  P A +N     +             
Sbjct: 13  EGKTKLLVPKGSITEKVPPK---------EPAFFNPKARLNRDFSIIAYAAFLKNFQGPK 63

Query: 212 DLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             LE   G G   L +A     D ++  ++   +++ A Y+   N + NV+ +      F
Sbjct: 64  IFLEGLSGIGARGLRVANELKIDNLVINDLNPTALKMAEYSAKLNEIKNVEFLEKEVCRF 123

Query: 270 TQAMRREREFNRLKDID 286
                ++ E   + DID
Sbjct: 124 FSNFSKKGERGSIVDID 140


>gi|325967616|ref|YP_004243808.1| ribosomal RNA small subunit methyltransferase C [Vulcanisaeta
           moutnovskia 768-28]
 gi|323706819|gb|ADY00306.1| ribosomal RNA small subunit methyltransferase C [Vulcanisaeta
           moutnovskia 768-28]
          Length = 198

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 24/114 (21%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             D+L++ CG G   +V A+     +V+ V+I K +V+    NI  N V+N ++      
Sbjct: 57  DWDILDMGCGYGVLGIVAAKLAPRGKVVMVDINKLAVKLTAINIKINRVSNAEV------ 110

Query: 268 EFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
                        RL D+   +    F TI  +PP  +GLD     ++ A  H+
Sbjct: 111 -------------RLSDLYSAVQGEMFNTIISNPPITAGLDVNKRLIIGAKDHL 151


>gi|269794423|ref|YP_003313878.1| ubiquinone/menaquinone biosynthesis methylase [Sanguibacter
           keddieii DSM 10542]
 gi|269096608|gb|ACZ21044.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Sanguibacter keddieii DSM 10542]
          Length = 296

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 31/58 (53%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            LL++ CG G  ++ LAR  +RV+ V+ A P +++AR    +    NV     ++ E 
Sbjct: 68  TLLDVGCGPGTVTVDLARLVERVVGVDAATPVLDSARELAESTGTTNVTFEYANAYEL 125


>gi|229105921|ref|ZP_04236545.1| Protein hemK [Bacillus cereus Rock3-28]
 gi|228677495|gb|EEL31748.1| Protein hemK [Bacillus cereus Rock3-28]
          Length = 283

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  A  
Sbjct: 102 VLERIERHFGNEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKALG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYKIHQKLDVVVSNPP 190


>gi|284988733|ref|YP_003407287.1| type 11 methyltransferase [Geodermatophilus obscurus DSM 43160]
 gi|284061978|gb|ADB72916.1| Methyltransferase type 11 [Geodermatophilus obscurus DSM 43160]
          Length = 363

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH-VNNV 259
           + A     G + ++ CG G  ++ +AR +   RV   +I +PSVE AR N       + V
Sbjct: 173 IDAALRAGGRVADVGCGMGWSAIGIARAYPRARVDGYDIDEPSVEQARRNAEEAGVADRV 232

Query: 260 KIVRMSSK 267
           +   + + 
Sbjct: 233 RFTTVDAA 240


>gi|254445586|ref|ZP_05059062.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
 gi|198259894|gb|EDY84202.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
          Length = 476

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 195 NVHMLE-----WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N  +       ++LA      G +L++ CG G  + +L+   +R++ V+I+  +++ A+ 
Sbjct: 12  NPQLYYEHIHRYLLAKENISGGLVLDMACGTGYGTKILSEIAERIVGVDISSEAIKEAQE 71

Query: 250 NIAANHVNNVKIVRMSS 266
              AN  +N +  +   
Sbjct: 72  ---ANSRDNTEFKKADC 85


>gi|86750293|ref|YP_486789.1| precorrin-6y C5,15-methyltransferase, subunit CbiE
           [Rhodopseudomonas palustris HaA2]
 gi|86573321|gb|ABD07878.1| precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Rhodopseudomonas palustris HaA2]
          Length = 407

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 7/146 (4%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD--LLELYCGNGNFSL--VLARHFDRVLAVE 238
           + +   Q +  +    +  V  ++   +G   L ++  G+G+  +  +LA   +R + +E
Sbjct: 228 LPDELFQTDGQLTKRAIRAVTLSSLAPRGGELLWDIGAGSGSIGIEWLLAARSNRAIGIE 287

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                +  AR N  A  V +  +    + E    +                         
Sbjct: 288 ARPDRLACARGNADALGVPHFDLRLGQAPEALADLPTPDAVFIGGGAGNPGVLDAVWQAL 347

Query: 299 PPRSGLDDATVGMVQAYPHILYISCN 324
           PP        V  V      L I+C+
Sbjct: 348 PP---GGRLVVNAVTLETEALLIACH 370


>gi|21229252|ref|NP_635174.1| methyltransferase [Methanosarcina mazei Go1]
 gi|20907827|gb|AAM32846.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 343

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 74/213 (34%), Gaps = 25/213 (11%)

Query: 66  QTKER--MRIDYFMPGSLLI---NALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
           QTKE   + I         I     +  E    + +   L+  L       S+++ A V 
Sbjct: 35  QTKEGAFLEIPVIEVACEAIEGFPVIEQENPEFLEIPASLKECL---KGSLSETELAQVP 91

Query: 121 LIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKICLD-----RDYVDERLTVA 174
             +H L D         L    +   +  + +  +       L      R    E L  +
Sbjct: 92  SGWHILGDIIIVSIPENLENKKILIAEALLSMYPKCKSVVRDLGIGGQFRQPERELLLGS 151

Query: 175 GRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           G   I+++    F Q    +   M       E    +  G    +++++ G G FS+ +A
Sbjct: 152 GTETIHKEHGCFFKQ---DVTKVMYSKGNLEERKRMSLLGAGETVVDMFAGIGYFSIPMA 208

Query: 229 RHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
            H    ++ ++EI   S    + NI  N V +V
Sbjct: 209 VHAKPEKITSIEINPESFAYLKENIRLNRVEDV 241


>gi|159903949|ref|YP_001551293.1| putative methyltransferase for ribosomal protein L11
           [Prochlorococcus marinus str. MIT 9211]
 gi|159889125|gb|ABX09339.1| putative methyltransferase for Ribosomal protein L11
           [Prochlorococcus marinus str. MIT 9211]
          Length = 305

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAA 253
              +    +   +     ++++ CG+G   L  L      V+ V+I   ++ +A+ N   
Sbjct: 146 TTKLCLEAIERQRPKDLRIVDIGCGSGVLGLAALRLGAKEVIGVDIDPLAIGSAQRNAFL 205

Query: 254 NHVNNVKI 261
           N  +    
Sbjct: 206 NDFDENSF 213


>gi|146279037|ref|YP_001169196.1| putative methyltransferase [Rhodobacter sphaeroides ATCC 17025]
 gi|145557278|gb|ABP71891.1| putative methyltransferase [Rhodobacter sphaeroides ATCC 17025]
          Length = 184

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV-RMSSKE 268
             +L+L+ G G   L  L+R     + VE   P++   + NIA     +   + R  +  
Sbjct: 52  ARVLDLFAGTGALGLEALSRGAGHAILVESGPPALALLKRNIALMQAEDRTAIERRDATR 111

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFV 297
              A         L          K +  
Sbjct: 112 HAPAPAAPVTLCFLDPPYGKGMGEKALAA 140


>gi|310659144|ref|YP_003936865.1| methyltransferase [Clostridium sticklandii DSM 519]
 gi|308825922|emb|CBH21960.1| putative methyltransferase [Clostridium sticklandii]
          Length = 188

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 11/88 (12%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+CG+G   +  ++R  D+V  V+    S+E  + NI +   ++ K            
Sbjct: 46  LDLFCGSGAIGIEAISRDADKVYFVDRDSSSIELTQKNIESCKFDSTKY----------K 95

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + +   F  L  +     +   IF+DPP
Sbjct: 96  ILKADAFEALNSLANKGIKLDYIFMDPP 123


>gi|312077865|ref|XP_003141489.1| hypothetical protein LOAG_05906 [Loa loa]
 gi|307763348|gb|EFO22582.1| hypothetical protein LOAG_05906 [Loa loa]
          Length = 487

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 10/127 (7%)

Query: 173 VAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           V    L Y+     F+Q   N  ++       +    G +    +   G G F L + R+
Sbjct: 204 VHEEKLRYQL---DFSQVFYNPRLSTE--HKRIVQKIGKRSIFYDCCAGVGPFVLPVVRN 258

Query: 231 -FDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287
               VLA ++    ++  R N+  NH+    +K+  M +  F   +  +   N  ++ ++
Sbjct: 259 GAHHVLANDLNPSCIDYLRRNMELNHLSFKRLKLYNMDAAIFINTVLADDLANEAENYNV 318

Query: 288 HSYRFKT 294
                KT
Sbjct: 319 SDSENKT 325


>gi|300869152|ref|ZP_07113749.1| methyltransferase type 11 [Oscillatoria sp. PCC 6506]
 gi|300332851|emb|CBN58947.1| methyltransferase type 11 [Oscillatoria sp. PCC 6506]
          Length = 440

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 181 RQIENSFTQP----NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRV 234
                +  Q     N     ++    +  T+G    +L+  CG+G  SL+LA      ++
Sbjct: 27  ETSPKNNYQTLYIHNLATAYYIRNQKVIETEGKV--ILDAGCGSGYKSLILAEANPGAKI 84

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + +++++ SV  AR  +  +   N+    +S +E 
Sbjct: 85  VGIDLSEESVNLARQRLQYHGFENIDFQALSIEEL 119


>gi|293410687|ref|ZP_06654263.1| hypothetical protein ECEG_01659 [Escherichia coli B354]
 gi|291471155|gb|EFF13639.1| hypothetical protein ECEG_01659 [Escherichia coli B354]
          Length = 314

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 76  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 129

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 130 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEQN 179

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 180 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 213


>gi|271500610|ref|YP_003333635.1| type 11 methyltransferase [Dickeya dadantii Ech586]
 gi|270344165|gb|ACZ76930.1| Methyltransferase type 11 [Dickeya dadantii Ech586]
          Length = 256

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 189 QPNAGIN-------VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q NA +N         + +            +L+L CG G+ S  +A   + V+A +++ 
Sbjct: 18  QANAYLNSAVHAQGEDLAQLAQRLQGNHHTCVLDLGCGAGHVSFTIASLVENVVACDLSP 77

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             ++          + N++  +  ++    A
Sbjct: 78  RMLDVVASAAQEKGLANIRTEQAVAESLPFA 108


>gi|298346213|ref|YP_003718900.1| HemK family modification methylase [Mobiluncus curtisii ATCC 43063]
 gi|298236274|gb|ADI67406.1| HemK family modification methylase [Mobiluncus curtisii ATCC 43063]
          Length = 290

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 194 INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVL--AVEIAKPSVEAARYN 250
           +    ++       +G+   +L+L CG+G   L +A    + +   V++++ +VE    N
Sbjct: 101 VAQGAIDAAADWVRQGVAPRVLDLGCGSGALGLSIASEVPQSVLTCVDVSEAAVELTAEN 160

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                V   +++   + +  Q +R       +        +F  I  +PP
Sbjct: 161 ARFTGVA-ARVLLADATD-PQTLRNALVRAEIPP------QFHVIATNPP 202


>gi|226939530|ref|YP_002794603.1| ribosomal protein L11 methyltransferase [Laribacter hongkongensis
           HLHK9]
 gi|254783308|sp|C1DCV9|PRMA_LARHH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|226714456|gb|ACO73594.1| PrmA [Laribacter hongkongensis HLHK9]
          Length = 297

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 25/125 (20%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W+ A   G +  +L+  CG+G  ++   +     V  ++I   +V+A+R N   N V 
Sbjct: 154 LQWLDANICGGES-VLDYGCGSGILAIAAIKLGATDVTGIDIDPQAVQASRDNAVQNQVT 212

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD---PPRSGLDDATVGMVQA 314
                                   L D      +F  +  +    P   L D     V+A
Sbjct: 213 AA--------------------FGLPDTLEDGRQFDVLVANILANPLRMLGDLLASHVRA 252

Query: 315 YPHIL 319
              I+
Sbjct: 253 GGRIV 257


>gi|197247768|ref|YP_002149453.1| methyltransferase domain family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197211471|gb|ACH48868.1| methyltransferase domain family [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 541

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+     G    +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITRQLPG-GARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|19112364|ref|NP_595572.1| type I ribosomal protein arginine N-methyltransferase Rmt3
           [Schizosaccharomyces pombe 972h-]
 gi|74626597|sp|O13648|ANM3_SCHPO RecName: Full=Ribosomal protein arginine N-methytransferase rmt3
 gi|6468730|emb|CAA17825.2| type I ribosomal protein arginine N-methyltransferase Rmt3
           [Schizosaccharomyces pombe]
          Length = 543

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 211 GDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L++ CG G  S+  A+    +V AV+ +   ++ A  N   N + + +  +R   ++
Sbjct: 257 KTVLDVGCGTGILSMFCAKAGAKKVYAVDNSDI-IQMAISNAFENGLADQITFIRGKIED 315

Query: 269 FT 270
            +
Sbjct: 316 IS 317


>gi|2257543|dbj|BAA21436.1| protein arginine N-methyltransferase [Schizosaccharomyces pombe]
          Length = 348

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 211 GDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L++ CG G  S+  A+    +V AV+ +   ++ A  N   N + + +  +R   ++
Sbjct: 62  KTVLDVGCGTGILSMFCAKAGAKKVYAVDNSDI-IQMAISNAFENGLADQITFIRGKIED 120

Query: 269 FT 270
            +
Sbjct: 121 IS 122


>gi|333002700|gb|EGK22260.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri K-272]
 gi|333016583|gb|EGK35913.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Shigella flexneri K-227]
          Length = 310

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|304439745|ref|ZP_07399643.1| possible SAM-dependent methyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371732|gb|EFM25340.1| possible SAM-dependent methyltransferase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 229

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 59/138 (42%), Gaps = 31/138 (22%)

Query: 164 RDYVDER-LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
           +DYV    + +  R   ++   +S               +L++   ++G +L+  CGNG 
Sbjct: 4   KDYVPGTDIEIFQRDDRFKYTTDS--------------LILSSFANVKGKVLDAGCGNGI 49

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL +      V++V++ +   +     I  N++ N+K+V                 +++
Sbjct: 50  LSLRVLNRAREVVSVDMEEIYTDNLNRTIELNNLKNIKVVN----------------SKI 93

Query: 283 KDIDIHSYRFKTIFVDPP 300
           +++  +S  F TI  +PP
Sbjct: 94  ENLKGYSGYFDTIITNPP 111


>gi|284032944|ref|YP_003382875.1| modification methylase, HemK family [Kribbella flavida DSM 17836]
 gi|283812237|gb|ADB34076.1| modification methylase, HemK family [Kribbella flavida DSM 17836]
          Length = 277

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 28/149 (18%)

Query: 160 ICLDRDYVDERLTVAGRTLIYR-----QIENSFTQPNAGINVHMLEWVLAATKGIQGD-L 213
           + +DR    E L     T  +R          F          ++ W+L   K ++   +
Sbjct: 56  VLVDRRAQREPLQHLTGTAAFRYRELVVGPGVF--VPRPETEVLVGWMLDRLKDVEAPLV 113

Query: 214 LELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++L  G+G  +  +A  R    V AVE++  +   AR N+                    
Sbjct: 114 VDLCSGSGAIAGAVATERPDSTVHAVELSPEACGWARRNLEGTGAT-------------- 159

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +        L ++D    +   +  +PP
Sbjct: 160 -LHEGDIDGCLPELD---GQVDAVIANPP 184


>gi|167753895|ref|ZP_02426022.1| hypothetical protein ALIPUT_02180 [Alistipes putredinis DSM 17216]
 gi|167658520|gb|EDS02650.1| hypothetical protein ALIPUT_02180 [Alistipes putredinis DSM 17216]
          Length = 352

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV 256
           ++   L          L++ CG G  ++V A+     V AV+I + +    R N AAN +
Sbjct: 204 LVASALCDLSLTGKRGLDMGCGTGVLAIVAAKRGAATVDAVDIDEWAEANCRENAAANGL 263

Query: 257 N--------NVKIVRMSSKEFTQA 272
                    +V  +     +F  A
Sbjct: 264 AERIAPMLGDVSRIAGRKYDFIAA 287


>gi|119188639|ref|XP_001244926.1| hypothetical protein CIMG_04367 [Coccidioides immitis RS]
          Length = 277

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 39/116 (33%), Gaps = 9/116 (7%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
               G +  +L+L  GNG  +  LAR    V+A +     V  A          NVK   
Sbjct: 46  EEKFGNELRVLDLATGNGLVAHWLARKGASVVATDGCDEMVRLAEK--RGEGAANVKYQV 103

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +   +  Q     RE             F TI ++     + D    +  A P IL
Sbjct: 104 LDVTDSKQWEAFIREEVE------RGGAFDTITMNMAFMDVAD-LEPLAAALPRIL 152


>gi|258653954|ref|YP_003203110.1| type 11 methyltransferase [Nakamurella multipartita DSM 44233]
 gi|258557179|gb|ACV80121.1| Methyltransferase type 11 [Nakamurella multipartita DSM 44233]
          Length = 227

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           QPN  +   + +          G  L++ CG G  ++ LA     V A++++  ++E A 
Sbjct: 46  QPNGALVAEVADLA-------PGRALDVGCGEGADTIWLAGRGWDVTALDVSGVALERAA 98

Query: 249 YNIAANHVNNVKIVRMS 265
            +     V  V  V   
Sbjct: 99  EHARDAGVA-VTWVHAD 114


>gi|229579608|ref|YP_002838007.1| methyltransferase small [Sulfolobus islandicus Y.G.57.14]
 gi|228010323|gb|ACP46085.1| methyltransferase small [Sulfolobus islandicus Y.G.57.14]
          Length = 186

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 208 GIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              G + ++ CG G   + LA   H  +V  V++   +++ A+ N   N V N  I+
Sbjct: 44  AESGIVADVGCGYGPIGIYLALKNHNLKVYMVDVNYIAIKLAKKNAKLNGVENRTII 100


>gi|297565935|ref|YP_003684907.1| type 11 methyltransferase [Meiothermus silvanus DSM 9946]
 gi|296850384|gb|ADH63399.1| Methyltransferase type 11 [Meiothermus silvanus DSM 9946]
          Length = 226

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +LE V + +   +  +L+L CGNG  +L LAR F    VL ++     +  AR N A   
Sbjct: 14  VLEIVSSLSLPERLRILDLGCGNGLLTLDLARAFPHAEVLGLDPTVSQIGLARENHAKEP 73

Query: 256 VNNVKIVRMSSK 267
           + NV+    ++ 
Sbjct: 74  LGNVRFAVGNAA 85


>gi|145634135|ref|ZP_01789846.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittAA]
 gi|145268579|gb|EDK08572.1| 23S rRNA m(5)U747-methyltransferase [Haemophilus influenzae PittAA]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 7/151 (4%)

Query: 2   SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPNLQ---IFRSEPIHYRMRAEFHIWHDGDDL 58
           S   L   Y QQL EK   L+Q +++      Q    F+S    +R +A+  +    +  
Sbjct: 14  SCQWLEIPYSQQLTEKQYHLKQKLISINYDEAQWVAPFQSNEQGFRNKAKMVVSGSVERP 73

Query: 59  YHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAI 118
              +      +   ID        +       + +I  + + RA L   +    + +   
Sbjct: 74  ILGILKNNDPQS-AIDLC---DCPLYPTHFSAIFSILKDFIGRAGLVPYNIAKQKGELKY 129

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQI 149
           + L      +       +R  + L   + ++
Sbjct: 130 ILLTESIATEKLMLRFVLRTENKLPLIRREL 160


>gi|289192747|ref|YP_003458688.1| protein of unknown function Met10 [Methanocaldococcus sp. FS406-22]
 gi|288939197|gb|ADC69952.1| protein of unknown function Met10 [Methanocaldococcus sp. FS406-22]
          Length = 336

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +     +   +++++ G G FS+   ++  ++ A++I   ++E  + NI  N + +
Sbjct: 189 IMKKVSLDDVVVDMFAGVGPFSIAC-KNAKKIYAIDINPHAIELLKKNIKLNKLEH 243


>gi|289582978|ref|YP_003481444.1| methyltransferase type 11 [Natrialba magadii ATCC 43099]
 gi|289532531|gb|ADD06882.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099]
          Length = 268

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
            ++ +  +  + V          +L+L CG G+ +  +AR    V+ ++ +   +  AR 
Sbjct: 19  NHSFVFEYGEDVVDLLEPAPDERILDLGCGTGHLTDQIARSGADVVGLDASGEMLAEARE 78

Query: 250 NIAANHVNNVKIVRMSSKEF-----TQAMRREREFNRLKDIDI 287
                   + + VR  +++F       A+      + + D D 
Sbjct: 79  -----RYPDREFVRADARDFSFEAEFDAVFSNAALHWIPDQDA 116


>gi|220908585|ref|YP_002483896.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219865196|gb|ACL45535.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 284

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARY 249
               + ++E +L  +   Q + +L++ CG G  SL LA  F   V  + ++    + AR 
Sbjct: 44  RQAQIDLIEALLQWSGVTQAENILDVGCGIGGSSLYLAEKFGAAVTGITLSPVQAQRARE 103

Query: 250 NIAANHVN-NVKIVRMSSKEFTQA 272
              A  +   V+     + E   A
Sbjct: 104 RAIAAGLAPQVQFQVADALELPFA 127


>gi|50843494|ref|YP_056721.1| hypothetical protein PPA2050 [Propionibacterium acnes KPA171202]
 gi|50841096|gb|AAT83763.1| conserved protein (putative rRNA small subunit methyltransferase)
           [Propionibacterium acnes KPA171202]
 gi|315107844|gb|EFT79820.1| methyltransferase small domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 334

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG  S  LAR      + A +++  ++++      AN 
Sbjct: 181 LLDYLDAIAADVHSDAVDLGCGNGVISAHLARLLPQATIHATDVSWQAIDSTHLTAQANQ 240

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           ++ V                         +DI +     +  +PP     +     T+ M
Sbjct: 241 LDIVTHWCDGL------------------VDIPNESVDAVVTNPPFHRGTAQDHAPTLAM 282

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 283 LADAARVL 290


>gi|328951528|ref|YP_004368863.1| RNA cap guanine-n2 methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
 gi|328451852|gb|AEB12753.1| RNA cap guanine-n2 methyltransferase [Marinithermus hydrothermalis
           DSM 14884]
          Length = 396

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             + +L  G G  +L LA     V+AVE         R N AA  V   + VR+   ++T
Sbjct: 100 ARVADLGAGIGADTLALAEVVREVIAVERDPLRALFLRANAAARGV--AERVRVLEADWT 157

Query: 271 QAMRREREFNRLKDIDIHSYRFKTI-FVDPPRSGLDDATVGMVQAYPHI 318
           QA                  R + +  ++PP +    A + +VQ   H+
Sbjct: 158 QASLEVDAAFVDPARRREGRRVRGLEAMNPPFA----AVLELVQRVRHV 202


>gi|312794763|ref|YP_004027685.1| methyltransferase [Burkholderia rhizoxinica HKI 454]
 gi|312166538|emb|CBW73541.1| Methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica HKI 454]
          Length = 579

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 187 FTQPNAGINVHMLEWV-LAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPS 243
           F Q + G    +     LAA       +LEL C  G   + LA  F     + ++++   
Sbjct: 37  FEQTHPGALAALAGLFGLAAPPVRTARILELGCAAGGNLIPLAAEFPESVCVGIDLSPVQ 96

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           +E  +  I  + + N   VR+  ++  +       F+ +    ++S+        P    
Sbjct: 97  IEDGQQRIVHSGLRN---VRLERRDLLELPGTLGLFDYIICHGVYSWVP------PAVRA 147

Query: 304 LDDATVGMVQAYPHILYIS 322
                     A   I Y+S
Sbjct: 148 AIMQICQQHLAPDGIAYVS 166


>gi|224023451|ref|ZP_03641817.1| hypothetical protein BACCOPRO_00151 [Bacteroides coprophilus DSM
           18228]
 gi|224016673|gb|EEF74685.1| hypothetical protein BACCOPRO_00151 [Bacteroides coprophilus DSM
           18228]
          Length = 411

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 16/136 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM- 273
           +L  G G     LAR F R   VE  +     A +N     ++++++    + E+ Q M 
Sbjct: 100 DLTAGLGVDCSFLARRFRRADYVERQETLCRLAAHNFPLLGLDHIQVHHADALEYLQEME 159

Query: 274 --------RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNP 325
                      R+ +  K + I         ++            MV+  P +     + 
Sbjct: 160 PVDCLFLDPARRDSHGGKTVAITECEPDVCALESLLVEKGRKV--MVKLSPML-----DM 212

Query: 326 DSLCRDLSILSTTHTI 341
            S  RDL  +   H I
Sbjct: 213 ASALRDLKYIRELHVI 228


>gi|159904724|ref|YP_001548386.1| hypothetical protein MmarC6_0333 [Methanococcus maripaludis C6]
 gi|159886217|gb|ABX01154.1| protein of unknown function Met10 [Methanococcus maripaludis C6]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +++++ G G F++ +A++     + A+E+   S      NI  N + NV  + + +++F
Sbjct: 103 VVDMFAGIGYFTIPIAKYSNPKMIYALELNPDSYYYLSENIKLNKLENVTPILVDNRDF 161


>gi|154483189|ref|ZP_02025637.1| hypothetical protein EUBVEN_00890 [Eubacterium ventriosum ATCC
           27560]
 gi|149735997|gb|EDM51883.1| hypothetical protein EUBVEN_00890 [Eubacterium ventriosum ATCC
           27560]
          Length = 286

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 62/174 (35%), Gaps = 30/174 (17%)

Query: 167 VDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLA--ATKGIQGDLLELYCGNGN 222
           + E+ T+  + L +     SF           +  +W        G    +L L+   G 
Sbjct: 69  LPEQWTINYKDLTFNLKPFSFKHTGLFPEQATNW-DWFSEKIRNAGRPVKVLNLFAYTGG 127

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFN 280
            +L        V  V+ +K  V  A+ N  ++ + +  V+ +     +F      ERE  
Sbjct: 128 ATLAALNAGAHVTHVDASKGVVAWAKENATSSGLIDKPVRWLVDDCVKFV-----EREIR 182

Query: 281 RLKDIDIHSYRFKTIFVDPPRSG---------LDDATVGMVQAYPHILYISCNP 325
           R         ++  I +DPP  G         ++++    ++    IL  S +P
Sbjct: 183 R-------GNKYDGIIMDPPSYGRGPKGEIWKIEESVFPFIELCSKIL--SDDP 227


>gi|148654554|ref|YP_001274759.1| type 11 methyltransferase [Roseiflexus sp. RS-1]
 gi|148566664|gb|ABQ88809.1| Methyltransferase type 11 [Roseiflexus sp. RS-1]
          Length = 251

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN-HVNNV 259
           +           +L+L CG G+ ++       RV+ +++++P +E AR +          
Sbjct: 31  YAATPIGHKDKTVLDLCCGTGHLAVYFLEKGYRVVGLDLSEPMLEYAREHARPYIDSGQA 90

Query: 260 KIVRMSSKEFT 270
             V+  +  FT
Sbjct: 91  AFVQGDASNFT 101


>gi|15669073|ref|NP_247878.1| hypothetical protein MJ_0883 [Methanocaldococcus jannaschii DSM
           2661]
 gi|3024916|sp|Q58293|TRM5B_METJA RecName: Full=tRNA (guanine-N(1)-)-methyltransferase Trm5b;
           AltName: Full=M1G-methyltransferase; AltName: Full=tRNA
           [GM37] methyltransferase
 gi|258588221|pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
 gi|258588222|pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
 gi|1499713|gb|AAB98887.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 336

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +++++ G G FS+   ++  ++ A++I   ++E  + NI  N + +
Sbjct: 199 VVDMFAGVGPFSIAC-KNAKKIYAIDINPHAIELLKKNIKLNKLEH 243


>gi|238789270|ref|ZP_04633057.1| hypothetical protein yfred0001_40770 [Yersinia frederiksenii ATCC
           33641]
 gi|238722602|gb|EEQ14255.1| hypothetical protein yfred0001_40770 [Yersinia frederiksenii ATCC
           33641]
          Length = 396

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            + A        +L  +   G F++  L  +  +V++V+ ++  ++ AR N+  N ++  
Sbjct: 212 RLAARNYANGRRVLNCFSYTGAFAVAALMGNCQQVISVDTSQSVLDIARQNVELNQLD-- 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
               +S  EF     R+  F  L++      +F  I +DPP+ 
Sbjct: 270 ----LSKAEFI----RDDVFQLLRNYRAQGEKFDMIIMDPPKF 304


>gi|300741701|ref|ZP_07071722.1| RNA methyltransferase, RsmD family [Rothia dentocariosa M567]
 gi|300380886|gb|EFJ77448.1| RNA methyltransferase, RsmD family [Rothia dentocariosa M567]
          Length = 203

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 19/118 (16%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+ Y G+G      L+R    V  VE    + E  R N+AA            + + 
Sbjct: 46  ARVLDAYAGSGALGCEALSRGAASVEFVEKYPKACEITRRNVAA------------TSKI 93

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ------AYPHILYI 321
              + R  + +    + +HS  +  +F+DPP +   +  + +++      A   I+ +
Sbjct: 94  ATGITRVTQGSAQSYVAVHSGPWDLVFLDPPYAFTQEQVLDILRVIAPNLAEGAIVVV 151


>gi|269929255|ref|YP_003321576.1| methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
 gi|269788612|gb|ACZ40754.1| Methyltransferase type 11 [Sphaerobacter thermophilus DSM 20745]
          Length = 258

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+L CG G+ +  +A H   V +++     +  AR N       ++      +     
Sbjct: 42  RILDLGCGTGHLTRAIADHGAHVTSIDRDPAMIAHARAN-----YPDLPFEVGDAAHLAP 96


>gi|229060571|ref|ZP_04197931.1| Methyltransferase type 11 [Bacillus cereus AH603]
 gi|228718745|gb|EEL70370.1| Methyltransferase type 11 [Bacillus cereus AH603]
          Length = 271

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 34/75 (45%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +   V          LL++  G G+ + +LA  F  V+A+++ +  +E A+  I  N   
Sbjct: 40  LQYVVQQVETRHNTRLLDIATGGGHVANLLAPMFKEVVALDLTEKMLEKAKGFIEGNGHE 99

Query: 258 NVKIVRMSSKEFTQA 272
           NV  V  +++    A
Sbjct: 100 NVSFVAGNAENLPFA 114


>gi|255540057|ref|XP_002511093.1| Magnesium-protoporphyrin O-methyltransferase, putative [Ricinus
           communis]
 gi|223550208|gb|EEF51695.1| Magnesium-protoporphyrin O-methyltransferase, putative [Ricinus
           communis]
          Length = 315

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           ++    ++L+ +          + +  CG G+ S+ LA+    VLA +I+   V  A  N
Sbjct: 129 HSKTVENVLKMLKDEGSLKGVTVCDAGCGTGSLSIPLAKEGAIVLASDISAAMVSEAEKN 188

Query: 251 IAANHVNNV--KIVRMSSKEF 269
                  NV  K      +  
Sbjct: 189 AKEQLGENVLPKFEVKDLESL 209


>gi|221202424|ref|ZP_03575456.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD2M]
 gi|221208116|ref|ZP_03581121.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD2]
 gi|221172019|gb|EEE04461.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD2]
 gi|221177701|gb|EEE10116.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD2M]
          Length = 300

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + +  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR N   N  
Sbjct: 156 MEWLEQSVQPGQS-VLDYGCGSGILAI-LAKKCGANPVVGIDIDPQAVESARQNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|183984483|ref|YP_001852774.1| hypothetical protein MMAR_4513 [Mycobacterium marinum M]
 gi|183177809|gb|ACC42919.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 253

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L++ CG+G  S+ +A+    VL V++ +  V  A  N+A         VR  + +  
Sbjct: 40  KRVLDVGCGHGALSIDIAQAGASVLGVDLDEGRVAFANRNLAQRFPELADRVRFRAVDV- 98

Query: 271 QAMRREREFNRLKDIDIHSYRFKT 294
           +++  +  F+ +   D   +    
Sbjct: 99  RSLPVDEPFDVIVSKDTFEHVADV 122


>gi|150865001|ref|XP_001384044.2| hypothetical protein PICST_58562 [Scheffersomyces stipitis CBS
           6054]
 gi|149386257|gb|ABN66015.2| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 279

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 6/122 (4%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
                      +  +           +++ CG G  ++  A++FD V+AV+I   +V+  
Sbjct: 54  YSVTPESIAVFVARLFKYLIPDAKSAMDVCCGGGGNTIHFAKYFDSVVAVDINAINVKCT 113

Query: 248 RYNIAANHVNN-VKIVRMSSKEF----TQAMRREREFNR-LKDIDIHSYRFKTIFVDPPR 301
            +N     V + +  V     E        +  +    + L++ +     F  IF  PP 
Sbjct: 114 EHNAQIYGVGSKIDTVVGDWNELSRVEVDGLPNQNWIPQHLRNKEFPQKTFDFIFSSPPW 173

Query: 302 SG 303
            G
Sbjct: 174 GG 175


>gi|134100186|ref|YP_001105847.1| hypothetical protein SACE_3648 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006595|ref|ZP_06564568.1| hypothetical protein SeryN2_18911 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912809|emb|CAM02922.1| hypothetical protein SACE_3648 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 221

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N H   W+L          L++ CG+G+ + +LAR  D VLAV+     VE AR    ++
Sbjct: 19  NAHYHAWILRQLPARFSRALDVGCGSGDLARLLARRADEVLAVDQDPSIVEHARS--LSS 76

Query: 255 HVNNVKIVRMSSKEF 269
           H  N+ +V     E 
Sbjct: 77  HRTNIDVVAADITEV 91


>gi|159038822|ref|YP_001538075.1| methyltransferase type 11 [Salinispora arenicola CNS-205]
 gi|157917657|gb|ABV99084.1| Methyltransferase type 11 [Salinispora arenicola CNS-205]
          Length = 285

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAA 253
            M+  +L    G    +L+L CG G     +A        VL ++ A   V+A   +I A
Sbjct: 35  KMVADLLELKPGE--RVLDLGCGRGACLFPVAAQVGTDGFVLGIDQAPGMVDACGADIEA 92

Query: 254 NHVNNVKIVR-MSSKEFT 270
             + +   VR   ++ FT
Sbjct: 93  RGLADRAQVRLGDAQNFT 110


>gi|50842730|ref|YP_055957.1| putative methylase [Propionibacterium acnes KPA171202]
 gi|289428592|ref|ZP_06430276.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Propionibacterium acnes J165]
 gi|295130811|ref|YP_003581474.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Propionibacterium acnes SK137]
 gi|50840332|gb|AAT82999.1| putative methylase [Propionibacterium acnes KPA171202]
 gi|289158286|gb|EFD06505.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Propionibacterium acnes J165]
 gi|291377241|gb|ADE01096.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Propionibacterium acnes SK137]
 gi|313772061|gb|EFS38027.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL074PA1]
 gi|313791909|gb|EFS40010.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL110PA1]
 gi|313801609|gb|EFS42849.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL110PA2]
 gi|313807752|gb|EFS46239.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL087PA2]
 gi|313810261|gb|EFS47982.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL083PA1]
 gi|313818789|gb|EFS56503.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL046PA2]
 gi|313820561|gb|EFS58275.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL036PA1]
 gi|313822634|gb|EFS60348.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL036PA2]
 gi|313825433|gb|EFS63147.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL063PA1]
 gi|313830591|gb|EFS68305.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL007PA1]
 gi|313833627|gb|EFS71341.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL056PA1]
 gi|313838322|gb|EFS76036.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL086PA1]
 gi|314924926|gb|EFS88757.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL036PA3]
 gi|314960549|gb|EFT04651.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL002PA2]
 gi|314962565|gb|EFT06665.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL082PA1]
 gi|314973592|gb|EFT17688.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL053PA1]
 gi|314975814|gb|EFT19909.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL045PA1]
 gi|314978720|gb|EFT22814.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL072PA2]
 gi|314983707|gb|EFT27799.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL005PA1]
 gi|314987888|gb|EFT31979.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL005PA2]
 gi|314989699|gb|EFT33790.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL005PA3]
 gi|315080406|gb|EFT52382.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL078PA1]
 gi|315084735|gb|EFT56711.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL027PA2]
 gi|315085419|gb|EFT57395.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL002PA3]
 gi|315088523|gb|EFT60499.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL072PA1]
 gi|315095865|gb|EFT67841.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL038PA1]
 gi|315105833|gb|EFT77809.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL030PA1]
 gi|327326417|gb|EGE68207.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL096PA2]
 gi|327331708|gb|EGE73445.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL096PA3]
 gi|327443484|gb|EGE90138.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL013PA2]
 gi|327445687|gb|EGE92341.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL043PA2]
 gi|327448329|gb|EGE94983.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL043PA1]
 gi|327453372|gb|EGF00027.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL092PA1]
 gi|328754696|gb|EGF68312.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL020PA1]
 gi|328760892|gb|EGF74457.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL099PA1]
          Length = 291

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 79  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGACPSVIDLCTGTGAIALAV 135

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+  +    V+++   +       RR          
Sbjct: 136 ASEVPGSRVSAVEVDDAALTWTRRNLCDSG---VEVLAGDALRVPDDGRR---------- 182

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 183 ------FDVVVTNPP 191


>gi|75676594|ref|YP_319015.1| hypothetical protein Nwi_2409 [Nitrobacter winogradskyi Nb-255]
 gi|74421464|gb|ABA05663.1| 3-demethylubiquinone-9 3-O-methyltransferase [Nitrobacter
           winogradskyi Nb-255]
          Length = 217

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 15/137 (10%)

Query: 179 IYRQIENSFTQPNAGI-------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
            Y   E  F Q  A +           L+            +L++ C  G  S+ LA+  
Sbjct: 24  HYDYGEGYFYQSLAELGVSGLRSTEARLKAYRLLDHIRDKTVLDIGCNAGFLSVSLAKAA 83

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK--------EFTQAMRREREFNRLK 283
             V  ++I       AR    A    N + +    +        +   ++     F+   
Sbjct: 84  QHVTGLDINPFLSALARTAAQALGRTNTEFLATGFEDAPLRGPYDVVMSLANHSTFDGQT 143

Query: 284 DIDIHSYRFKTIFVDPP 300
             D+ SY  + I +  P
Sbjct: 144 RYDLQSYFDRCISLLKP 160


>gi|90422828|ref|YP_531198.1| Mg-protoporphyrin IX methyl transferase [Rhodopseudomonas palustris
           BisB18]
 gi|90104842|gb|ABD86879.1| magnesium protoporphyrin O-methyltransferase [Rhodopseudomonas
           palustris BisB18]
          Length = 233

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +L W+ A   G+   LL+  CG G  S+ +AR    V+A++++   VE AR 
Sbjct: 52  LLSWLPANMTGM--RLLDAGCGTGALSIEVARRGAHVVAIDLSPTLVEVARE 101


>gi|306831419|ref|ZP_07464577.1| methyltransferase domain protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426204|gb|EFM29318.1| methyltransferase domain protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 197

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 20/102 (19%)

Query: 213 LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           LL+L CG G   + LA+    +   V+I   +++ A+ N   N V          ++ T 
Sbjct: 61  LLDLGCGYGPLGISLAKVQGVQATMVDINNRAIDLAQKNAEKNGVTANIFQSNIYEKVT- 119

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                               F  I  +PP          ++ 
Sbjct: 120 ------------------GTFDYIISNPPIRAGKQVVHTIIA 143


>gi|303243742|ref|ZP_07330083.1| ribosomal L11 methyltransferase [Methanothermococcus okinawensis
           IH1]
 gi|302485984|gb|EFL48907.1| ribosomal L11 methyltransferase [Methanothermococcus okinawensis
           IH1]
          Length = 270

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 42/111 (37%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +  T      + +L  G+G  +++ ++    V AVE+   +   A+ NI  N   N+ +
Sbjct: 27  AIKKTVKPNDVVYDLGTGSGILAMIASQITKNVYAVELDPITYAYAKENIKINKCENINL 86

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +   + E+      +     + D  + +     +     + GL      ++
Sbjct: 87  IEADASEYNFKEPADVIIAEMLDTALITEPQVPVLNAIIKKGLLKEGGKLI 137


>gi|298252616|ref|ZP_06976410.1| methylase of polypeptide chain release factors [Gardnerella
           vaginalis 5-1]
 gi|297532980|gb|EFH71864.1| methylase of polypeptide chain release factors [Gardnerella
           vaginalis 5-1]
          Length = 304

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 6/111 (5%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251
           +    L+W+  +    +  +++L  G+G   L +A      +V AVE +  + +  + N 
Sbjct: 105 VVEAGLDWLRESGI-SKPTVVDLCAGSGAIGLSIAAEVADAQVWAVEKSPEAFQYLQKNF 163

Query: 252 A--ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              A    N++I          A  +    +   ++     +   +  +PP
Sbjct: 164 EETAKKWENIQIFSRYHAVLADA-TKSHISDCTPELHAICGKVDLVITNPP 213


>gi|317131432|ref|YP_004090746.1| Methyltransferase type 11 [Ethanoligenens harbinense YUAN-3]
 gi|315469411|gb|ADU26015.1| Methyltransferase type 11 [Ethanoligenens harbinense YUAN-3]
          Length = 248

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           VL       G +L+L CG G+ S+ LARH   V+ V+ ++  
Sbjct: 30  VLERHGEKPGTVLDLACGTGSLSVELARHGREVVGVDASEQM 71


>gi|289425387|ref|ZP_06427164.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Propionibacterium acnes SK187]
 gi|289154365|gb|EFD03053.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Propionibacterium acnes SK187]
          Length = 291

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 79  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGACPSVIDLCTGTGAIALAV 135

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+  +    V+++   +       RR          
Sbjct: 136 ASEVPGSRVSAVEVDDAALTWTRRNLCDSG---VEVLAGDALRVPDDGRR---------- 182

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 183 ------FDVVVTNPP 191


>gi|260914190|ref|ZP_05920663.1| protein methyltransferase HemK [Pasteurella dagmatis ATCC 43325]
 gi|260631823|gb|EEX50001.1| protein methyltransferase HemK [Pasteurella dagmatis ATCC 43325]
          Length = 308

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 27/99 (27%)

Query: 212 DLLELYCGNGNFSLVLARHFD----------RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +L+L  G G  +L LA               +LAV+    +VE AR N   NH+  V  
Sbjct: 135 TILDLGTGTGAIALALASELKMLTQKCGANLNILAVDRIAEAVELARENAKYNHLE-VTF 193

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++ S                  D    S +F  I  +PP
Sbjct: 194 LQSS----------------WFDALDPSIKFDVIVSNPP 216


>gi|242241572|ref|ZP_04796017.1| methyltransferase [Staphylococcus epidermidis W23144]
 gi|242234953|gb|EES37264.1| methyltransferase [Staphylococcus epidermidis W23144]
          Length = 241

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
              +++L  GNG   L+LA    + +  +EI +  V  AR +   N +N+ + + RM  K
Sbjct: 43  NDKVMDLCSGNGVIPLLLAAKSTQPIEGIEIQEQLVSMARRSFKLNDLNDRLTMHRMDLK 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCN 324
           +  Q                   ++  +  +PP   ++       +A+    + I CN
Sbjct: 103 DVYQTF--------------QPAQYTLVTCNPPYFKMNQNHQHQKEAHKIARHEIMCN 146


>gi|221194449|ref|ZP_03567506.1| methyltransferase [Atopobium rimae ATCC 49626]
 gi|221185353|gb|EEE17743.1| methyltransferase [Atopobium rimae ATCC 49626]
          Length = 747

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 122 IYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV---DERLTVAGRTL 178
           +  + L D        L    H    +I+   +     +           + L +    L
Sbjct: 485 LAKKRLLDVLTIAPEVLEVPPHHVNLRIRTRAKGGSQYVSEGEAPTYAHKQTLLIDEGGL 544

Query: 179 IYRQIENSFTQ-------PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
            +      F+Q        +      M+   +  T G     L L+   G  +   A   
Sbjct: 545 TFEV---DFSQHLDCGIFLDHRQTRAMIRE-MMKTAGTAKSFLNLFAYTGTATCYAADGG 600

Query: 232 D-RVLAVEIAKPSVEAARYNIAANHVNNV--KIVRMSSKEFTQAMRREREFNRLKDIDIH 288
                 V+++KPS+E AR N+  N  +    + V+  +  +    RR +    +   D+ 
Sbjct: 601 ALHTTTVDLSKPSLEWARRNMCQNGFDGQEHEFVQADALTWITEQRRSKNRWNVIFCDVP 660

Query: 289 SYRFKTIFVDPPRSGLDDATVGMVQAYPH------ILYISCNPDSLCRDLSILST 337
           ++   +         +      ++           +   SCN  S   D+  +  
Sbjct: 661 TFSNSSRM-KKASFDVQRDHAELIIGISRLLTRGGVALFSCNLRSFKPDVEKIER 714


>gi|218778802|ref|YP_002430120.1| methyltransferase type 11 [Desulfatibacillum alkenivorans AK-01]
 gi|218760186|gb|ACL02652.1| Methyltransferase type 11 [Desulfatibacillum alkenivorans AK-01]
          Length = 210

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 31/70 (44%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           ++A       +L++ CG G  +L LA   +++  V+++   +    +    +  +NV+ V
Sbjct: 30  ISALIPEGCTVLDVCCGTGRLALDLAPKCEKITGVDMSARMLRFGEFLKKGSKASNVEFV 89

Query: 263 RMSSKEFTQA 272
              +     A
Sbjct: 90  HGDATRLEDA 99


>gi|213407832|ref|XP_002174687.1| arginine N-methyltransferase [Schizosaccharomyces japonicus yFS275]
 gi|212002734|gb|EEB08394.1| arginine N-methyltransferase [Schizosaccharomyces japonicus yFS275]
          Length = 504

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEF 269
           +L++ CG G  S+  A+     V AV+ +   +  A  N A N +  ++  +    +E 
Sbjct: 220 VLDVGCGTGILSMFAAKAGAKHVYAVDNSNI-IHLAIANAAENDLSKDITFIHGKVEEI 277


>gi|170751295|ref|YP_001757555.1| methyltransferase small [Methylobacterium radiotolerans JCM 2831]
 gi|170657817|gb|ACB26872.1| methyltransferase small [Methylobacterium radiotolerans JCM 2831]
          Length = 324

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 20/91 (21%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +++ CG+G   + +A+      V+ V+I   ++ AAR N      + V + R      
Sbjct: 144 RAVDIGCGSGAAGICVAKRAPGAEVVLVDINPAAMRAARVNARLAGTDGVDVRRSD---- 199

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              M R+ E            +F  I  +PP
Sbjct: 200 ---MLRDVE-----------GQFDLIVSNPP 216


>gi|146220118|gb|ABQ11273.1| putative methyltransferase [uncultured bacterium]
          Length = 247

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           G +L+L  G G  S+  AR   +V  V+   P ++ AR + A  ++  ++ VR   +EF+
Sbjct: 44  GAVLDLCSGIGRHSIEFARRGFKVTGVDRTTPYLDQARSSAAKENLK-IEFVRSDMREFS 102

Query: 271 QAMRREREFN 280
           +    +   N
Sbjct: 103 RPAAFDAAIN 112


>gi|156933895|ref|YP_001437811.1| tellurite resistance protein TehB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532149|gb|ABU76975.1| hypothetical protein ESA_01721 [Cronobacter sakazakii ATCC BAA-894]
          Length = 197

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + V A      G  L+L CGNG  SL LA     V A +    S+       AA  +N++
Sbjct: 21  DVVNAVNYVEPGRALDLGCGNGRNSLFLAARGFDVTAWDKNPASIANLERIAAAEGLNHL 80

Query: 260 KIVRMS 265
            I    
Sbjct: 81  HIAVKD 86


>gi|294777681|ref|ZP_06743132.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacteroides vulgatus PC510]
 gi|319640267|ref|ZP_07994992.1| protoporphyrinogen oxidase [Bacteroides sp. 3_1_40A]
 gi|294448749|gb|EFG17298.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacteroides vulgatus PC510]
 gi|317388042|gb|EFV68896.1| protoporphyrinogen oxidase [Bacteroides sp. 3_1_40A]
          Length = 278

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 45/106 (42%), Gaps = 19/106 (17%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254
            +++W++   K  +  +L++  G+G  ++ LA++     V++ ++++  ++ A  N   N
Sbjct: 98  ELVDWIIREHKYGRVRILDIGTGSGCIAVSLAKNLEEAEVVSWDVSEKVLQVAERNCRRN 157

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            V     V +  ++   A                  RF  I  +PP
Sbjct: 158 GVR----VTLEQRDVLLASPA-------------GERFDVIVSNPP 186


>gi|281491999|ref|YP_003353979.1| 16S rRNA m(2)G 1207 methyltransferase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281375708|gb|ADA65212.1| 16S rRNA m(2)G 1207 methyltransferase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 21/154 (13%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D+    + + G+++ ++     F++        +L  +          LL++ CG G
Sbjct: 14  LSHDFQTLTVELLGQSMRFKTDRGVFSKNGIDYGSRVL--LENYQPESAKSLLDVGCGYG 71

Query: 222 NFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA+ FD  V  V++   +++  R N   N V+N KI                E +
Sbjct: 72  TLGLTLAKKFDLGVTMVDVNSRALDLCRQNAIDNAVSNSKI----------------ELS 115

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + +    S ++  I  +PP     +    ++  
Sbjct: 116 NIYES--VSEKYDAIISNPPIRAGKEVVHEILAG 147


>gi|326316786|ref|YP_004234458.1| ubiquinone biosynthesis O-methyltransferase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323373622|gb|ADX45891.1| ubiquinone biosynthesis O-methyltransferase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 238

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 41/110 (37%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L W+          +L++ CG G  +  +AR    V  +++A  S++ A+ + 
Sbjct: 34  HEINPLRLGWIDGLAPLQGQRVLDVGCGGGILADAMARKGATVTGIDLATKSLKVAQLHA 93

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
                 +++   +S +   +      +     ++  H     ++     R
Sbjct: 94  LEAGTPHIQYREVSVEALAEESPASFDTVTCMEMLEHVPDPASVVQACAR 143


>gi|290960213|ref|YP_003491395.1| methyltransferase [Streptomyces scabiei 87.22]
 gi|260649739|emb|CBG72855.1| putative methyltransferase [Streptomyces scabiei 87.22]
          Length = 260

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              ++  +       +  +L++  G G  +L  AR    V AV+I++ +V   R N    
Sbjct: 20  TELLVHALGREPLAPRARVLDVGTGTGAVALAAARRGADVTAVDISRRAVLNTRVNALLA 79

Query: 255 HVNNVKIVRMS 265
            +  V +VR  
Sbjct: 80  RLP-VTVVRGD 89


>gi|222100868|ref|YP_002535436.1| Methyltransferase type 11 [Thermotoga neapolitana DSM 4359]
 gi|221573258|gb|ACM24070.1| Methyltransferase type 11 [Thermotoga neapolitana DSM 4359]
          Length = 216

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 19/106 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV 256
           +L W    +KG++  +LEL  G G     LAR +   V+ VE  K   E A   I+ N +
Sbjct: 28  LLVWYAKPSKGVK-RVLELGSGVGTVGFALARLYGVEVVGVEKEKELYEKAVQGISLNGL 86

Query: 257 NN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
              V  V  S +                D       F  +  +PP 
Sbjct: 87  EGKVSFVNASVE----------------DCSFPPESFDMVVSNPPH 116


>gi|146082470|ref|XP_001464521.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134068614|emb|CAM66910.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 689

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           L    G    L ++  G G F++  A+   +V A ++   + +  + N   NH+  N+++
Sbjct: 431 LVDRMGPGDMLFDVMAGVGPFAVPAAKKGVQVFANDLNPVAAQYMKVNAELNHLPANSLR 490

Query: 261 IVRMSSKEFT 270
           +  M  ++F 
Sbjct: 491 VFNMDGRDFL 500


>gi|15673425|ref|NP_267599.1| hypothetical protein L65498 [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724433|gb|AAK05541.1|AE006374_6 conserved hypothetical protein [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406920|gb|ADZ63991.1| ribosomal RNA small subunit methyltransferase C [Lactococcus lactis
           subsp. lactis CV56]
          Length = 200

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 21/154 (13%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNG 221
           L  D+    + + G+++ ++     F++        +L  +          LL++ CG G
Sbjct: 14  LSHDFQTLTVELLGQSMRFKTDRGVFSKNGIDYGSRVL--LENYQPESAKSLLDVGCGYG 71

Query: 222 NFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
              L LA+ FD  V  V++   +++  R N   N V+N KI                E +
Sbjct: 72  TLGLTLAKKFDLGVTMVDVNSRALDLCRQNAIDNAVSNSKI----------------ELS 115

Query: 281 RLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + +    S ++  I  +PP     +    ++  
Sbjct: 116 NIYES--VSEKYDAIISNPPIRAGKEVVHEILAG 147


>gi|60683732|ref|YP_213876.1| hypothetical protein BF4320 [Bacteroides fragilis NCTC 9343]
 gi|60495166|emb|CAH09987.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 399

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 28/119 (23%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L++L  G G     LA  F  V  +E  +   E A +N     + ++++      E+ Q 
Sbjct: 89  LVDLTGGFGIDCAFLATQFKTVTYIERQEELCELAMHNFPLLGLKHIRVQNGDGVEYLQQ 148

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS-CNP--DSL 328
           M                     IF+DP R                I+ IS C P   +L
Sbjct: 149 MPAV----------------DCIFLDPARRNEHGG---------KIVAISDCEPNVATL 182


>gi|114320071|ref|YP_741754.1| 3-demethylubiquinone-9 3-methyltransferase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|122312095|sp|Q0AA73|UBIG_ALHEH RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|114226465|gb|ABI56264.1| 3-demethylubiquinone-9 3-methyltransferase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 247

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 68/157 (43%), Gaps = 21/157 (13%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L++V     G++G  +L++ CG G  +  +AR    V  ++++K +++ AR +
Sbjct: 39  HDINPLRLDYVAQCLGGLEGRRILDVGCGGGLLAEGMARRGAEVTGIDMSKAALQVARLH 98

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                V  V   +++ +E   +   E  F+ +  +++  +           +    A   
Sbjct: 99  ALEMEVE-VAYRQITVEELADS--DEPRFDAVTCLEMLEHVPDP-------ASAVHACAR 148

Query: 311 MVQAYPHILYISCNPDSLCRD-----LSILSTTHTIE 342
           +V+   H+++      +L R+      +IL   + ++
Sbjct: 149 LVKPGGHVIF-----STLNRNPKSYLFAILGAEYLLQ 180


>gi|297625401|ref|YP_003687164.1| methyltransferase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921166|emb|CBL55713.1| methyltransferase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 199

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N   +  +L+ V        GD+L++ CG+G     LA    RV+ ++    ++  AR  
Sbjct: 8   NTAYHAELLDAV----PPSGGDVLDIGCGDGLLVEKLATKATRVIGLDPDPRAINQARR- 62

Query: 251 IAANHVNNVKIVRMS 265
                  N ++V  S
Sbjct: 63  -RLTETPNAQVVLGS 76


>gi|294497624|ref|YP_003561324.1| methyltransferase domain-containing protein [Bacillus megaterium QM
           B1551]
 gi|294347561|gb|ADE67890.1| Methyltransferase domain protein [Bacillus megaterium QM B1551]
          Length = 257

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
              A +   G LL++  G G+ +  LA  F  V A ++    +++A   I  N   NV  
Sbjct: 34  AEIAEENRGGKLLDVATGGGHVANKLAPVFQEVTAFDLTPQMLQSAEGFITGNGHENVSF 93

Query: 262 VRMSSKE 268
           V+  +++
Sbjct: 94  VQGDAED 100


>gi|224024952|ref|ZP_03643318.1| hypothetical protein BACCOPRO_01683 [Bacteroides coprophilus DSM
           18228]
 gi|224018188|gb|EEF76186.1| hypothetical protein BACCOPRO_01683 [Bacteroides coprophilus DSM
           18228]
          Length = 237

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A    +G +L+L  G G  +L+ A+     V  +++ + +VE A  N+AA        
Sbjct: 31  AWAELPEEGRVLDLGTGTGLIALMAAQRCQAPVCGIDVDEAAVEQALENVAA--SPWADR 88

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +R+  ++  +                    F  I  +PP
Sbjct: 89  IRIWKQDVREMWAE------------TDGVFDAIVSNPP 115


>gi|206561759|ref|YP_002232524.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           J2315]
 gi|226710058|sp|B4E5V2|PRMA_BURCJ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|198037801|emb|CAR53745.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           J2315]
          Length = 300

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR N   N  
Sbjct: 156 MEWLEQSVKPGQS-VLDYGCGSGILAI-LAKKCGANPVIGIDIDPQAVESARQNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|154151731|ref|YP_001405349.1| methyltransferase type 11 [Candidatus Methanoregula boonei 6A8]
 gi|154000283|gb|ABS56706.1| Methyltransferase type 11 [Methanoregula boonei 6A8]
          Length = 279

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +L+L CG GN ++ LA+    V AV+             A+ H+  +  +  +
Sbjct: 52  ILDLGCGTGNVAIPLAKRGFHVYAVDPDPEMRNEGCRRAASGHITGISWLDGA 104


>gi|134084353|emb|CAK48693.1| unnamed protein product [Aspergillus niger]
          Length = 411

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 3/114 (2%)

Query: 204 AATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              +G    ++++Y G G F    L R   RV   EI   SVE  R    AN   +   V
Sbjct: 226 EDMEGAGMSVVDMYAGIGYFVFSYLRRGVQRVWGWEINGWSVEGLRRGCMANGWGDEDRV 285

Query: 263 RMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            +   +   A R   +   + +        R   + + P  +    A   MV  
Sbjct: 286 VVFHGDNRFAARVLAQIRHVMEARGRWAPVRHVNLGLLPSSAAAWGAACRMVDG 339


>gi|94500339|ref|ZP_01306872.1| hypothetical protein RED65_06958 [Oceanobacter sp. RED65]
 gi|94427638|gb|EAT12615.1| hypothetical protein RED65_06958 [Oceanobacter sp. RED65]
          Length = 240

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 21/143 (14%)

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHF-DRV 234
           +   + S  Q N+ + V +   + AA    +      +L+L  G G   L+LA+ F   +
Sbjct: 4   FHFKQFSIVQTNSAMKVTLDACLFAAYIARESSAPEYVLDLGMGTGVLGLMLAQAFDAHI 63

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
             +E+   +   A  NI A+  +N   V          +R+ R+  R             
Sbjct: 64  TGIELDSDACRDAHTNIEASPFSNRVRV------LQADIRQWRDTRR----------SDL 107

Query: 295 IFVDPPRSGLDDATVGMVQAYPH 317
           I  +PP      A     +A   
Sbjct: 108 IVSNPPFFTAHLANPNKQKAMAR 130


>gi|91217896|ref|ZP_01254850.1| putative sun protein [Psychroflexus torquis ATCC 700755]
 gi|91183989|gb|EAS70378.1| putative sun protein [Psychroflexus torquis ATCC 700755]
          Length = 404

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 16/162 (9%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--------ERLTVAGR 176
           + L   W      L +          L     K ++ LD +++         E L +  R
Sbjct: 132 KELGKLWESEIHALNEQAKVILRTNTLKITPTKLQLILDEEFIPTKLIKGYPEALELYER 191

Query: 177 TLIYRQIE--NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA---RHF 231
             +++       F +     +   +   L    G+   +++   G G  +L +A    + 
Sbjct: 192 ADVFKTEAFKKGFFEV-QDASSQKVAHALKLEPGL--RVIDACAGAGGKTLHIAALMENK 248

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +V+A++I    ++  +        +N++   + S +  + +
Sbjct: 249 GQVIAMDIYGNKLKELKRRAKRAGAHNLETREIDSTKVIKKL 290


>gi|323476778|gb|ADX82016.1| Methyltransferase type 11 [Sulfolobus islandicus HVE10/4]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++L CG G F+ +LAR    V AV+  + ++   +  +    +NNV      +++   
Sbjct: 44  TVVDLGCGPGFFTTILARIVKTVYAVDPDERAIRRLKEKVQKLSLNNVIPYVAPAQKL-- 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                 EF + K ID   +    +      +G       +++    + YIS
Sbjct: 102 ------EFIKDKSIDFV-FSNLMLCCTSDHNGSIKEIKRILKDNG-LAYIS 144


>gi|323474149|gb|ADX84755.1| Methyltransferase type 11 [Sulfolobus islandicus REY15A]
          Length = 189

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 10/111 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++L CG G F+ +LAR    V AV+  + ++   +  +    +NNV      +++   
Sbjct: 44  TVVDLGCGPGFFTTILARIVKTVYAVDPDERAIRRLKEKVQKLSLNNVIPYVAPAQKL-- 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                 EF + K ID   +    +      +G       +++    + YIS
Sbjct: 102 ------EFIKDKSIDFV-FSNLMLCCTSDHNGSIKEIKRILKDNG-LAYIS 144


>gi|322497937|emb|CBZ33012.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 689

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVK 260
           L    G    L ++  G G F++  A+   +V A ++   + +  + N   NH+  N+++
Sbjct: 431 LVDRMGPGDMLFDVMAGVGPFAVPAAKKGVQVFANDLNPVAAQYMKVNAELNHLPANSLR 490

Query: 261 IVRMSSKEFT 270
           +  M  ++F 
Sbjct: 491 VFNMDGRDFL 500


>gi|319779618|ref|YP_004130531.1| Hypothetical adenine-specific methylase yfcB [Taylorella
           equigenitalis MCE9]
 gi|317109642|gb|ADU92388.1| Hypothetical adenine-specific methylase yfcB [Taylorella
           equigenitalis MCE9]
          Length = 313

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 62/166 (37%), Gaps = 38/166 (22%)

Query: 151 LIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQ-----PNAGIN------VHML 199
           L+    KTKI    DY+++R+ V    L Y    +++ Q      N+ +         +L
Sbjct: 68  LVTEDEKTKIL---DYLNKRI-VDRMPLPY-ITGSAWLQGLEFIVNSDVLIPRSFIAELL 122

Query: 200 EWVL---AATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAAN 254
              L            +L++  G+G   +++A    F  V  V+I+  +++ A+ N   +
Sbjct: 123 SQDLFEQDILNTEPSKILDMCTGSGCLGILVALIYPFAEVDGVDISDAAIKIAKLNKDKH 182

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +V N   +      F                    Y++  I  +PP
Sbjct: 183 NVQNFHPIVSDLFSFNP-----------------DYKYDLIICNPP 211


>gi|256811424|ref|YP_003128793.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
 gi|256794624|gb|ACV25293.1| protein of unknown function Met10 [Methanocaldococcus fervens AG86]
          Length = 247

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A        +++++ G G F++ +A++     + A+E    +      NI  N +NNV 
Sbjct: 88  MAHISNENEVVVDMFAGIGYFTIPMAKYSKPKLIYAIEKNPTAYHYLCENIKLNKLNNVV 147

Query: 261 IVRMSSKEF 269
            +   ++  
Sbjct: 148 PILADNRAV 156


>gi|224046260|ref|XP_002197924.1| PREDICTED: trimethylguanosine synthase homolog [Taeniopygia
           guttata]
          Length = 892

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 18/100 (18%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQ 271
           +++ +CG G  ++  A    RV+A++I    +  AR+N        ++  +         
Sbjct: 735 IVDAFCGVGGNAIQFALTSKRVIAIDIDPEKLRLARHNAEVYGVAEHIDFLCGDFMALAA 794

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            +                     +F+ PP  G D AT  +
Sbjct: 795 GLCA-----------------DVVFLSPPWGGPDYATAEI 817


>gi|187777347|ref|ZP_02993820.1| hypothetical protein CLOSPO_00899 [Clostridium sporogenes ATCC
           15579]
 gi|187774275|gb|EDU38077.1| hypothetical protein CLOSPO_00899 [Clostridium sporogenes ATCC
           15579]
          Length = 246

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 17/104 (16%)

Query: 211 GDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
            ++++L  G G    +LA       ++ +EI K   + A+ +I  N++   VK +    K
Sbjct: 47  DEVVDLCTGTGIIPFILAGKTNASNIIGIEIQKEIADMAKRSIKYNNLQEKVKFIEGDLK 106

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           +             LKDI+    +   + V+PP        + +
Sbjct: 107 DI----------KLLKDIE----KADVVTVNPPYKTQGTGIINI 136


>gi|161525950|ref|YP_001580962.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189349331|ref|YP_001944959.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|221213232|ref|ZP_03586207.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD1]
 gi|226710059|sp|A9AI41|PRMA_BURM1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|160343379|gb|ABX16465.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|189333353|dbj|BAG42423.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|221166684|gb|EED99155.1| ribosomal protein L11 methyltransferase [Burkholderia multivorans
           CGD1]
          Length = 300

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + +  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR N   N  
Sbjct: 156 MEWLEQSVQPGQS-VLDYGCGSGILAI-LAKKCGANPVVGIDIDPQAVESARQNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|145506282|ref|XP_001439107.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124406280|emb|CAK71710.1| unnamed protein product [Paramecium tetraurelia]
          Length = 487

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 18/155 (11%)

Query: 182 QIENSFTQP----NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR---HFDRV 234
             E  F  P    N  + V +++      + I   +L+    +G  S+  A+   +   +
Sbjct: 40  IEEEVFYNPAQIINRDLTVLVIDTFQENRQPIT--ILDALSASGLRSVRFAQEIQNVKEI 97

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A +++  S+     NI  N+V+NVKI  M + +  +      E  +   ID+  Y    
Sbjct: 98  YANDLSLASLALIDENIKLNNVSNVKIYNMDANKLMK------EDIKFDVIDLDPYGTVC 151

Query: 295 IFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
            F+D      DD+ + +      +L   C PD+  
Sbjct: 152 PFLDSAIHSCDDSLLCITCTDSRVL---CGPDTQK 183


>gi|90581427|ref|ZP_01237222.1| hypothetical protein VAS14_21892 [Vibrio angustum S14]
 gi|90437404|gb|EAS62600.1| hypothetical protein VAS14_21892 [Vibrio angustum S14]
          Length = 201

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+L+ G+G  S   L+R  + V  +E+ K +      N+ 
Sbjct: 48  VKETLFNWLAQDIY--QSKCLDLFAGSGGLSFEALSRGAESVTMLELDKKAANQLEQNLK 105

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                N  +V   S  F                         +F+DPP R  L    +  
Sbjct: 106 TVGAKNATVVNGDSLTFLSQ---------------QGRAHDLVFIDPPFRKDLIQDVIAA 150

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 151 LENNGWLAPHAMIYI 165


>gi|72076117|ref|XP_793185.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
 gi|115742455|ref|XP_001198218.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus
           purpuratus]
          Length = 205

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKE 268
             ++++ CG G  +  LAR    V+ V+    ++E A+++++ +     NVK +  ++++
Sbjct: 110 ATIVDVGCGGGILAEPLARLGATVIGVDATPENIEVAQHHVSHDPTIRGNVKYICGTAED 169

Query: 269 FT 270
             
Sbjct: 170 LV 171


>gi|329936375|ref|ZP_08286140.1| methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329304171|gb|EGG48052.1| methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 220

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 18/106 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +   +          +L++  G+G  +LV AR   RV AV++++ +V AAR N    
Sbjct: 16  TALLAGALSDEPLAPDALVLDVGTGSGALALVAARRGARVTAVDVSRRAVYAARLNAWRA 75

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +  ++ +R +   FT                +    F  +  +PP
Sbjct: 76  GLR-IRALRGNL--FTP---------------VAGETFDLVLANPP 103


>gi|322374350|ref|ZP_08048864.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus sp. C300]
 gi|321279850|gb|EFX56889.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus sp. C300]
          Length = 278

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 76/200 (38%), Gaps = 44/200 (22%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + + +A ++    +   L + K    +IG+A         D+   +L V  R LI R   
Sbjct: 45  QEVTEAEKQFVEEIFQQLASHKPAQYIIGQA---------DFFGMQLKVDERVLIPRPE- 94

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKP 242
                        ++E +LA     +  +L++  G+G  +L LA++     V A +I++ 
Sbjct: 95  ----------TEELVELILAENPEDKLKVLDIGTGSGAIALGLAKNRPDWSVTAADISQD 144

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-- 300
           ++E A  N    ++N                     F +       S ++  I  +PP  
Sbjct: 145 ALELASENARNQNLN-------------------IFFKKSDCFAEISEKYDIIVSNPPYI 185

Query: 301 -RSGLDDATVGMVQAYPHIL 319
            R    +  + ++ + PH+ 
Sbjct: 186 SREDESEVGLNVLHSEPHLA 205


>gi|322371123|ref|ZP_08045675.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
 gi|320549113|gb|EFW90775.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
          Length = 235

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 200 EWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           + VL A   ++G  +LE+ CG G F+++LA     ++ ++I+   ++  R+        +
Sbjct: 34  QAVLDAIGPVEGKRVLEIACGTGRFTVMLAERGADIVGLDISAAMLQQGRHKARNAGVAD 93

Query: 258 NVKIVRMSSKEF 269
           +++ +R  +   
Sbjct: 94  HLEFMRGDAARL 105


>gi|289668672|ref|ZP_06489747.1| hypothetical protein XcampmN_09297 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 224

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 48/142 (33%), Gaps = 19/142 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F Q        +L   +A        +LEL CG G  SLVL R    V+A +    +   
Sbjct: 49  FGQVWPAGQ--LLAEAMATRPIEGKRILELGCGLGLASLVLRRRGADVVASDHHPLAEVF 106

Query: 247 ARYNIAANHVNNVKIVRMS---------------SKEFTQAMRREREFNRLKDIDIHSYR 291
             YN A N + +V   R+                + +     R      +L    +    
Sbjct: 107 LAYNAALNALESVPYRRLDWDAGAPNMGQFDMIIASDVLYETRHATMLAKLI-PALAKPS 165

Query: 292 FKTIFVDPPRSGLDDATVGMVQ 313
            + +  DP R G  +A   M+ 
Sbjct: 166 CEIVISDPGR-GNANALSRMLA 186


>gi|317131131|ref|YP_004090445.1| Methyltransferase type 11 [Ethanoligenens harbinense YUAN-3]
 gi|315469110|gb|ADU25714.1| Methyltransferase type 11 [Ethanoligenens harbinense YUAN-3]
          Length = 191

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 19/138 (13%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + ++A        L ++ CG G F+L  A   R    V AV+IA+  ++      AA  +
Sbjct: 26  QTLVALGFSPDQTLADIGCGTGLFTLPAAEINRGKGTVYAVDIAREMLDEIGKRAAAAGL 85

Query: 257 NNVKIVRMS---------SKEFT-------QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +N+  V+           + +F        +   + R       I         I  DP 
Sbjct: 86  SNITTVQADEYGTNLPDAAADFLLVCTVLHEVDDKVRWLQEAARICRKGGSIAVIEFDPS 145

Query: 301 RSGLDDATVGMVQAYPHI 318
            +G        +     +
Sbjct: 146 FTGFGPPAAHRLPKDRTM 163


>gi|312196327|ref|YP_004016388.1| methyltransferase type 11 [Frankia sp. EuI1c]
 gi|311227663|gb|ADP80518.1| Methyltransferase type 11 [Frankia sp. EuI1c]
          Length = 219

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 8/110 (7%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +   + +          G  L+L CG G  ++ LA        ++ +  ++E A  
Sbjct: 21  PNRFVAAELAQL-------PAGRALDLACGEGRNAIWLASRGWHATGLDFSAAAIERAAR 73

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
                 V +    R+ +    +A       + L                P
Sbjct: 74  LAGEAGVADRTRFRV-ADVIAEAEPETGGRSDLPAAGCFDAVIVAYLQIP 122


>gi|238917366|ref|YP_002930883.1| HemK protein [Eubacterium eligens ATCC 27750]
 gi|238872726|gb|ACR72436.1| HemK protein [Eubacterium eligens ATCC 27750]
          Length = 279

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 18/90 (20%)

Query: 213 LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L++  G+G   + LA+ F   RVL V++++ ++  A+ N       N+  +R       
Sbjct: 115 ILDMCTGSGCIGITLAKKFPECRVLGVDVSEKALNVAQSNKHNLEAENIDFMRSD----- 169

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                      L +   H   F TI  +PP
Sbjct: 170 -----------LFEELNHDITFNTIVSNPP 188


>gi|229024393|ref|ZP_04180845.1| Methyltransferase type 11 [Bacillus cereus AH1272]
 gi|228736911|gb|EEL87454.1| Methyltransferase type 11 [Bacillus cereus AH1272]
          Length = 128

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + +LA  F  V+A+++ +  +E A+  I  N 
Sbjct: 31  QYVVQQVASRHNN---RLLDIATGGGHVANLLAPMFKEVVALDLTEKMLEKAKGFIEGNG 87

Query: 256 VNNVKIVRMSSKEFTQA 272
             NV  V   ++    A
Sbjct: 88  HENVSFVAGHAERLPFA 104


>gi|295838018|ref|ZP_06824951.1| methyltransferase [Streptomyces sp. SPB74]
 gi|197699143|gb|EDY46076.1| methyltransferase [Streptomyces sp. SPB74]
          Length = 247

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            H+   + A   G  G  L+L CG G  +  LA H  RV AV+++  ++  AR
Sbjct: 53  EHLAAHLAAGRLGAPGRALDLGCGTGRNAAHLAAHGWRVDAVDLSATALATAR 105


>gi|160896943|ref|YP_001562525.1| ribosomal protein L11 methyltransferase [Delftia acidovorans SPH-1]
 gi|160362527|gb|ABX34140.1| ribosomal protein L11 methyltransferase [Delftia acidovorans SPH-1]
          Length = 296

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+    +G  G  L+  CG+G  ++  A+     + AV+I   +VE+ RYN  AN V 
Sbjct: 154 LRWIARQPQGSLGRTLDYGCGSGILAIGAAKFGATDIDAVDIDPAAVESTRYNADANAVQ 213


>gi|221068958|ref|ZP_03545063.1| modification methylase, HemK family [Comamonas testosteroni KF-1]
 gi|220713981|gb|EED69349.1| modification methylase, HemK family [Comamonas testosteroni KF-1]
          Length = 291

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 20/125 (16%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              +++W L      Q   +++L  G+G  +L L   R   RV+AV+ +  ++  AR N 
Sbjct: 108 TETLVDWALELIPEGQPVRVVDLGTGSGAIALALQSQRPSARVIAVDASADALAVARSNA 167

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A   +     V+++   + +        + L+ +D+       I  +PP    DD  +  
Sbjct: 168 ARLQLP----VQLAHGSWLE------PLDGLEPVDL-------IVSNPPYIRADDPHLAA 210

Query: 312 VQAYP 316
           +   P
Sbjct: 211 LTHEP 215


>gi|15805939|ref|NP_294638.1| hypothetical protein DR_0914 [Deinococcus radiodurans R1]
 gi|6458636|gb|AAF10491.1|AE001944_2 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 298

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 18/98 (18%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA        +L+L CG G      A    +V  V+    SV ++   +AAN +   +++
Sbjct: 152 LADLDLTGQRVLDLGCGAGLIGAWAASRGGQVTLVDGDLQSVRSSERTLAANALPG-EVI 210

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                                D  +   +F  +  +PP
Sbjct: 211 HSDV-----------------DAALGERQFDVMLTNPP 231


>gi|56963429|ref|YP_175160.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
 gi|56909672|dbj|BAD64199.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           clausii KSM-K16]
          Length = 254

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
               L++  G G+ +  +A +   V+AV++    + AA+   A N + N++ V  ++++ 
Sbjct: 40  AKTALDIATGAGHAAKTIAPYVQNVIAVDVTPEMLAAAQNVAATNRLTNIEFVEATAEKL 99


>gi|163847010|ref|YP_001635054.1| hypothetical protein Caur_1437 [Chloroflexus aurantiacus J-10-fl]
 gi|222524833|ref|YP_002569304.1| hypothetical protein Chy400_1560 [Chloroflexus sp. Y-400-fl]
 gi|163668299|gb|ABY34665.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448712|gb|ACM52978.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 396

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           A      G++ +L CG G  ++ LA    +V+AVE     +  AR+N+    +
Sbjct: 90  ARRLAQAGNVADLGCGIGGDTIALADAGAQVIAVERDPIRLALARFNVEVLGL 142


>gi|107021680|ref|YP_620007.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           AU 1054]
 gi|116688626|ref|YP_834249.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|123072432|sp|Q1BZC1|PRMA_BURCA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223397|sp|A0K4C9|PRMA_BURCH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|105891869|gb|ABF75034.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia cenocepacia AU 1054]
 gi|116646715|gb|ABK07356.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Burkholderia cenocepacia HI2424]
          Length = 300

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR N   N  
Sbjct: 156 MEWLEQSVKPGQS-VLDYGCGSGILAI-LAKKCGANPVIGIDIDPQAVESARQNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|308175551|ref|YP_003922256.1| hypothetical protein BAMF_3660 [Bacillus amyloliquefaciens DSM 7]
 gi|307608415|emb|CBI44786.1| RBAM_035500 [Bacillus amyloliquefaciens DSM 7]
 gi|328555529|gb|AEB26021.1| hypothetical protein BAMTA208_19365 [Bacillus amyloliquefaciens
           TA208]
 gi|328913902|gb|AEB65498.1| Uncharacterized methyltransferase [Bacillus amyloliquefaciens LL3]
          Length = 226

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 37/185 (20%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           G+N ++L+ +    +     +L++ CG GN    +      V  +E    + E A     
Sbjct: 17  GLNPYLLKKIDKNWR----TVLDVGCGTGNLGAAIEDRGITVYGIEAYPEAAEKAE---- 68

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP---PRSGLDDATV 309
            N +++V  +    +      + E +F+ +   D+  +      V     P    D   +
Sbjct: 69  -NKLSHV--LCGDIESAILPYKSE-QFDCMLFGDVLEHLVDPWSVLKKLRPYLKKDGTVL 124

Query: 310 GMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHM------ECGVLLV 363
             +    HI  +          L +L+   T     L DQ     H+      E   L  
Sbjct: 125 ACIPNVGHISVV----------LELLAGKWTYRDAGLMDQ----THLRFFTREETLSLF- 169

Query: 364 RKPSG 368
            K SG
Sbjct: 170 -KASG 173


>gi|226356993|ref|YP_002786733.1| methylase [Deinococcus deserti VCD115]
 gi|226318983|gb|ACO46979.1| putative methylase [Deinococcus deserti VCD115]
          Length = 207

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
              A  G   + L+L+ G+G   L  A     V  VE    +V A  +N     +   ++
Sbjct: 50  AARAPVGRFPNFLDLHGGSGAVGLEAASRGYSVTLVEKDARAVRALEHNARTLGLQ-ARV 108

Query: 262 VRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSG 303
           +R  +      +            D+DI +   K +     R G
Sbjct: 109 LRADAMSLLPRLGSFDLVFSDPPYDVDIPAVTLKLLDSGVVRPG 152


>gi|145607017|ref|XP_001407437.1| hypothetical protein MGG_12102 [Magnaporthe oryzae 70-15]
 gi|145014629|gb|EDJ99197.1| hypothetical protein MGG_12102 [Magnaporthe oryzae 70-15]
          Length = 463

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                 ++LY G G F    A+   RVL  E+   SVE  R     N    +K+VR 
Sbjct: 226 AAPPWAVDLYAGIGYFVFSYAKLGMRVLCWEVNPWSVEGLRRGARRNGWK-IKVVRG 281


>gi|254253299|ref|ZP_04946617.1| Ribosomal protein L11 methylase [Burkholderia dolosa AUO158]
 gi|124895908|gb|EAY69788.1| Ribosomal protein L11 methylase [Burkholderia dolosa AUO158]
          Length = 300

 Score = 45.4 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+    K  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR N   N  
Sbjct: 156 MEWLEQTVKPGQS-VLDYGCGSGILAI-LAKKCGADPVVGIDIDPQAVESARQNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|325912951|ref|ZP_08175325.1| methyltransferase small domain protein [Lactobacillus iners UPII
           60-B]
 gi|325477765|gb|EGC80903.1| methyltransferase small domain protein [Lactobacillus iners UPII
           60-B]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I G++L++  G G   L  A+     RV  +++ + ++  A+ N   N ++NV I    
Sbjct: 60  EISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFSSD 119

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                        +  L + +    +F  I  +PP          ++Q    
Sbjct: 120 C------------YRNLDEQE----QFGLILTNPPIRAGKQVVDDILQNAKK 155


>gi|319399644|gb|EFV87898.1| methyltransferase small domain protein [Staphylococcus epidermidis
           FRI909]
          Length = 241

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 17/118 (14%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
              +++L  GNG   L+LA    + +  +EI +  V  AR +   N +N+ + + RM  K
Sbjct: 43  NDKVMDLCSGNGVIPLLLAAKSTQPIEGIEIQEQLVSMARRSFKLNDLNDRLTMHRMDLK 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCN 324
           +  Q                   ++  +  +PP   ++       +A+    + I CN
Sbjct: 103 DVYQTF--------------QPAQYTLVTCNPPYFKMNQNHQHQKEAHKIARHEIMCN 146


>gi|309805440|ref|ZP_07699487.1| methyltransferase small domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|312870886|ref|ZP_07730991.1| methyltransferase small domain protein [Lactobacillus iners LEAF
           3008A-a]
 gi|329920991|ref|ZP_08277519.1| methyltransferase small domain protein [Lactobacillus iners SPIN
           1401G]
 gi|308165258|gb|EFO67494.1| methyltransferase small domain protein [Lactobacillus iners LactinV
           09V1-c]
 gi|311093576|gb|EFQ51915.1| methyltransferase small domain protein [Lactobacillus iners LEAF
           3008A-a]
 gi|328935267|gb|EGG31747.1| methyltransferase small domain protein [Lactobacillus iners SPIN
           1401G]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I G++L++  G G   L  A+     RV  +++ + ++  A+ N   N ++NV I    
Sbjct: 60  EISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFSSD 119

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                        +  L + +    +F  I  +PP          ++Q    
Sbjct: 120 C------------YRNLDEQE----QFGLILTNPPIRAGKQVVDDILQNAKK 155


>gi|307565081|ref|ZP_07627594.1| PUA domain protein [Prevotella amnii CRIS 21A-A]
 gi|307346250|gb|EFN91574.1| PUA domain protein [Prevotella amnii CRIS 21A-A]
          Length = 401

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 19/117 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
           N  +LE            +L ++C  G FS+   R     V +V+ +  ++E    NI  
Sbjct: 219 NRKLLE-----FYSKDRSVLNMFCYTGGFSVYAMRGGAKEVHSVDSSAKAIELTNKNIEL 273

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           N   + +        F             K +D H  ++  I +DPP        + 
Sbjct: 274 NFPKDKRHAAFCEDAF-------------KYLDEHDDKYDLIILDPPAFAKHRNALK 317


>gi|293115697|ref|ZP_06604572.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292808689|gb|EFF67894.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 493

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 62/190 (32%), Gaps = 21/190 (11%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR--QIENSFTQPNAGI 194
           RL +++     +++ I        CL      +  T       YR   +  S T  NA  
Sbjct: 280 RLVNSVSDYDIELRFIQNKESKSACL-----LKLFTKKDNRFAYRKNHVATSLTPVNAAG 334

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
            V M E  L         +L+ +CG G   +   +      +  ++I   ++E  R N  
Sbjct: 335 IVKMSEKYLEKY----AQVLDPFCGVGTLLIERNKLVRTRTMYGIDIFGEAIEGGRQNAV 390

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              V  +  +  +  +F      +     +        RF     D       D  V ++
Sbjct: 391 LAGV-GINYICRNFFDFRHEYLFDEIITEMP-------RFDKGQADDFYRRFFDKAVEVL 442

Query: 313 QAYPHILYIS 322
           +    I+ +S
Sbjct: 443 KEGGVIILVS 452


>gi|227111947|ref|ZP_03825603.1| putative metallothionein SmtA [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 261

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L  +L         +L+   G G  +  LA    +VL  +++   ++ A+   AA  V +
Sbjct: 34  LSDLLTQFPARPLRILDAGGGEGQMACRLAALGHQVLLCDVSGEMIQRAKNAAAAQGVTH 93

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           N++ V+ ++++  Q M    +      +     + + + 
Sbjct: 94  NMRFVQCAAQDIAQYMDSPADLILFHAVLEWVAQPQQVL 132


>gi|254447085|ref|ZP_05060552.1| 3-demethylubiquinone-9 3-O-methyltransferase [gamma proteobacterium
           HTCC5015]
 gi|198263224|gb|EDY87502.1| 3-demethylubiquinone-9 3-O-methyltransferase [gamma proteobacterium
           HTCC5015]
          Length = 234

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L+++ +    ++G  +L++ CG G  +  +A     V  +++++ +++AA+ +
Sbjct: 30  HDINPLRLDYIQSRCGDLKGLRVLDVGCGGGILAQSMAERGAEVTGLDLSREALKAAQQH 89

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              + V  ++ +  + ++       + +     ++  H    +++           A   
Sbjct: 90  ADDSGVQ-LEYIEQAVEDLAAERAEQYDVVTCMEMLEHVPDPESVI---------RACAQ 139

Query: 311 MVQAYPHILYISCNPDSLCRDLSIL 335
           +V+    ++       +L R+    
Sbjct: 140 LVKPGGDVV-----MSTLNRNPKSF 159


>gi|167630221|ref|YP_001680720.1| methyltransferase, putative [Heliobacterium modesticaldum Ice1]
 gi|167592961|gb|ABZ84709.1| methyltransferase, putative [Heliobacterium modesticaldum Ice1]
          Length = 195

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 209 IQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           ++   L+L+ G G   L  L+R    V  VE    +      NI A  +N  K+++   +
Sbjct: 41  LEAQCLDLFAGTGALGLEALSRGAAFVYWVEKHPAACAVIAKNIEATGLNRGKVLKQDVR 100

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           +  Q +  E              RF  IF DPP  
Sbjct: 101 QACQRLLAE------------GRRFDLIFADPPYK 123


>gi|29829453|ref|NP_824087.1| methyltransferase [Streptomyces avermitilis MA-4680]
 gi|29606561|dbj|BAC70622.1| putative modification methyltransferase [Streptomyces avermitilis
           MA-4680]
          Length = 293

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 25/132 (18%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARH 230
             R L  +     F          ++ W + A +    ++  +++L  G+G  +L LA+ 
Sbjct: 87  YFRYLELQVGPGVF--VPRPETESVVGWAIDAVRAMDVVEPLIVDLCTGSGAIALALAQE 144

Query: 231 F--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               RV AVE+++ ++   R N+  + V+               +R+        D+D  
Sbjct: 145 VPRSRVHAVELSEDALRWTRKNVEGSRVD---------------LRQGDALEAFPDLD-- 187

Query: 289 SYRFKTIFVDPP 300
             +   +  +PP
Sbjct: 188 -GQVDLVISNPP 198


>gi|46202898|ref|ZP_00208707.1| COG0500: SAM-dependent methyltransferases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 330

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 196 VHMLEWVLAATKGIQ--GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN--- 250
             M+  + A     Q    +L+L CG G  +  LA    R+   +++   +  AR     
Sbjct: 136 ERMVAALDALPCAPQHFPSVLDLGCGTGLMARALADRAGRMAGCDLSPAMLARARATGLY 195

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
                 + V  +    +     +     F  L D+         + 
Sbjct: 196 ERLAEADLVAFLDGEPEASADLIVAADVFIYLSDLGPALAAIARVL 241


>gi|328852769|gb|EGG01912.1| hypothetical protein MELLADRAFT_110558 [Melampsora larici-populina
           98AG31]
          Length = 443

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 213 LLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +++L+CG G F+   L     RV++ EI+  +VE  +    AN+V  +  V  S  EF  
Sbjct: 267 VVDLFCGIGFFTFPYLLAGAQRVISCEISSWAVEGLKRGAMANNV--LSYVAGSPSEF-- 322

Query: 272 AMRREREFNRLKDIDIHSYRFKTI 295
            + +E E  +L  +   + +   I
Sbjct: 323 KLDQESEDAKLWIVPYPNEKAVEI 346


>gi|331698898|ref|YP_004335137.1| type 11 methyltransferase [Pseudonocardia dioxanivorans CB1190]
 gi|326953587|gb|AEA27284.1| Methyltransferase type 11 [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           PN  +       V   +    G  L++ CG G     LA     V  VEI++ ++E A  
Sbjct: 42  PNPQL-------VDETSGLTPGTALDVGCGEGADVAWLAGRGWTVTGVEISRVALERAEA 94

Query: 250 NIAANHVNN-VKIVRMSSK 267
           +     +    + + + + 
Sbjct: 95  HAREAGLTGRTRWLHLDAT 113


>gi|315924272|ref|ZP_07920496.1| protein-(glutamine-N5) methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622433|gb|EFV02390.1| protein-(glutamine-N5) methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 26/130 (20%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFD--RVLAVE 238
              NA +        +++E  LA        ++L+L CG+G   + L       ++   +
Sbjct: 90  FDVNAHVLIPRPDTENIVETALAWISKRSRPEVLDLCCGSGAIGIALKNCCPNIQLWLSD 149

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K ++  A+ N   +H+                   +     L +  +   RF  I  +
Sbjct: 150 ISKEALAIAKSNAQKHHIE-----------------AQLILGDLFEGLLPGQRFDMIVTN 192

Query: 299 PPRSGLDDAT 308
           PP    D+  
Sbjct: 193 PPYIPTDEIA 202


>gi|312872218|ref|ZP_07732291.1| methyltransferase small domain protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092302|gb|EFQ50673.1| methyltransferase small domain protein [Lactobacillus iners LEAF
           2062A-h1]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I G++L++  G G   L  A+     RV  +++ + ++  A+ N   N ++NV I    
Sbjct: 60  EISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFSSD 119

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                        +  L + +    +F  I  +PP          ++Q    
Sbjct: 120 C------------YRNLDEQE----QFGLILTNPPIRAGKQVVDDILQNAKK 155


>gi|307189800|gb|EFN74072.1| HemK methyltransferase family member 1 [Camponotus floridanus]
          Length = 353

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 25/213 (11%)

Query: 136 IRLRDALHARKYQIQLIGRANKTKIC---LDRDYVDERLTVAG-RTLIYRQIENSFTQPN 191
            ++ D L+ R  ++          +C   L R  V   +     R +  + +   F  P 
Sbjct: 86  KKIIDILNVRNNRLNANQIEKLESMCECRLSRMPVQYIIGEWDFRDITVKLVPPIFI-PR 144

Query: 192 AGINVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEA 246
                 ++++VL     +Q D   +LE+ CG+G  SL LA   +++   A++ +  + + 
Sbjct: 145 PE-TEILVDFVLKRLNSLQLDSCEILEIGCGSGAISLALAHACEKIKCTAIDTSPYACDL 203

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
              N    ++ N   V  ++ +    +   +E N   D+D++   F  +  +PP      
Sbjct: 204 TIINRDKLNLANRVTVIHATLKSDATVEVFKELNGASDMDLNLRLFDFVVSNPPYV---- 259

Query: 307 ATVGMVQAYPHI-LYISCNPDSLCRDLSILSTT 338
            T  + +  P I +Y          DL  L   
Sbjct: 260 PTKHISKLQPEIRIY---------EDLRALDGG 283


>gi|306818558|ref|ZP_07452281.1| RsmD family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
 gi|304648731|gb|EFM46033.1| RsmD family RNA methyltransferase [Mobiluncus mulieris ATCC 35239]
          Length = 187

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 18/110 (16%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L+++ G+G   L  L+R     + V+ A+ +V+  R N AA      V++V   +  
Sbjct: 45  ARVLDIFAGSGALGLEALSRGATDAILVDSARGAVQVLRANAAALSAGERVQVVGADAVR 104

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS---GLDDATVGMVQAY 315
           F  ++               + RF  +F+DPP +   G+ D  +  V  +
Sbjct: 105 FAASLGA-------------NERFDLVFIDPPYALDFGILDQVLSSVATH 141


>gi|269978183|ref|ZP_06185133.1| RNA methyltransferase, RsmD family [Mobiluncus mulieris 28-1]
 gi|269933692|gb|EEZ90276.1| RNA methyltransferase, RsmD family [Mobiluncus mulieris 28-1]
          Length = 187

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 18/110 (16%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L+++ G+G   L  L+R     + V+ A+ +V+  R N AA      V++V   +  
Sbjct: 45  ARVLDIFAGSGALGLEALSRGATDAILVDSARGAVQVLRANAAALSAGERVQVVGADAVR 104

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS---GLDDATVGMVQAY 315
           F  ++               + RF  +F+DPP +   G+ D  +  V  +
Sbjct: 105 FAASLGA-------------NERFDLVFIDPPYALDSGILDQVLSSVATH 141


>gi|209965323|ref|YP_002298238.1| ribosomal protein L11 methyltransferase [Rhodospirillum centenum
           SW]
 gi|209958789|gb|ACI99425.1| ribosomal protein L11 methyltransferase [Rhodospirillum centenum
           SW]
          Length = 289

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G  L++ CG+G     +AR +   VL V+I   SVE A  N   N V ++  +R  +   
Sbjct: 151 GHALDMGCGSGILGFAIARLWRMPVLGVDIDDLSVEIAAENAVLNRVAHLVDLRAGNGYD 210

Query: 270 TQAMRREREFN 280
           T  +RR   F+
Sbjct: 211 TPEVRRRAPFD 221


>gi|322518398|sp|B3DLB3|ANM2_XENTR RecName: Full=Protein arginine N-methyltransferase 2; AltName:
           Full=Histone-arginine N-methyltransferase PRMT2
 gi|189441612|gb|AAI67381.1| prmt2 protein [Xenopus (Silurana) tropicalis]
          Length = 433

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 211 GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
             +L+L CG G  S   A+      V AVE ++ + E  R  +  N ++N V ++R  ++
Sbjct: 142 KHILDLGCGTGIISFFCAKLAQPEAVYAVEASEIA-EQTRRLVKQNGISNLVHVIRQRAE 200

Query: 268 EF 269
           E 
Sbjct: 201 EL 202


>gi|158339693|ref|YP_001520700.1| SAM-dependent methyltransferase, putative [Acaryochloris marina
           MBIC11017]
 gi|158309934|gb|ABW31550.1| SAM-dependent methyltransferase, putative [Acaryochloris marina
           MBIC11017]
          Length = 234

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +      Q  LL++ CG     + LA   ++  ++ +E  +     A  NI   +++N+ 
Sbjct: 19  IRKVVKTQHRLLDIGCGTATKLIQLASITNYQEIIGIEPNERMRFKAEENIKLANLDNIS 78

Query: 261 IVRMSSKEF 269
           IV  S+++ 
Sbjct: 79  IVSGSAEDL 87


>gi|172061378|ref|YP_001809030.1| methyltransferase type 11 [Burkholderia ambifaria MC40-6]
 gi|171993895|gb|ACB64814.1| Methyltransferase type 11 [Burkholderia ambifaria MC40-6]
          Length = 250

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +     A      G +L+L CG G+ S  +A H   V+A ++A P +             
Sbjct: 30  LQALADAVRATPDGAVLDLGCGAGHASFAVAPHVRDVVAYDLAAPMLATVDAAARERGFA 89

Query: 258 NVKIVRMSSKEF 269
           N++  +  ++  
Sbjct: 90  NIRTQQGPAERL 101


>gi|169618070|ref|XP_001802449.1| hypothetical protein SNOG_12223 [Phaeosphaeria nodorum SN15]
 gi|111059515|gb|EAT80635.1| hypothetical protein SNOG_12223 [Phaeosphaeria nodorum SN15]
          Length = 242

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEI 239
            E+++       I   +   +  +    +  +++ + G G  ++ LAR     RV A+E 
Sbjct: 45  TEDAWFGVTPEPIANKIAAHIAESVPSSKSIIVDAFAGVGGNAIALARSGRWERVFAIEK 104

Query: 240 AKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            + +++ A++N     V +    +     E  Q  +   E             +
Sbjct: 105 DEKTMKCAKHNAEVYGVASKIFWLTGDCFEAIQRFKGSNEVVIFASPPWGGVEY 158


>gi|328958740|ref|YP_004376126.1| ribosomal RNA methyltransferase [Carnobacterium sp. 17-4]
 gi|328675064|gb|AEB31110.1| ribosomal RNA methyltransferase [Carnobacterium sp. 17-4]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 19/119 (15%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L   L  +K   GD+L++ CG G   L LA+      V  V++ + ++  A+ N + N 
Sbjct: 48  LLIETLDFSKMTNGDILDVGCGYGPMGLALAKEDPERNVEMVDVNERALGLAKQNASNNR 107

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           ++NV I      E                  +    F  I  +PP         G++  
Sbjct: 108 LSNVLIHTSDIYE-----------------SVEGKEFAAIVSNPPIRAGKKVVHGILTG 149


>gi|303256164|ref|ZP_07342180.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Burkholderiales bacterium 1_1_47]
 gi|302860893|gb|EFL83968.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Burkholderiales bacterium 1_1_47]
          Length = 267

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 26/136 (19%)

Query: 190 PNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAK 241
            N  +         ++EW++         + +L  G+G  +  +A  R    V A ++++
Sbjct: 78  VNPSVLIPRSDTECLVEWLIE-HLPKNALVCDLGTGSGCIAATVALERPDLTVWASDLSE 136

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            ++  A+ N  A   + VK+V+ S                  D       F  +  +PP 
Sbjct: 137 SALAVAQANCKALGAD-VKLVQGS----------------WLDPYPAELSFDAVISNPPY 179

Query: 302 SGLDDATVGMVQAYPH 317
              DD  +  ++  P 
Sbjct: 180 IERDDKHLDALRYEPR 195


>gi|294631401|ref|ZP_06709961.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. e14]
 gi|292834734|gb|EFF93083.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. e14]
          Length = 279

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 25/132 (18%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARH 230
             R L  +     F          ++ W + A +    ++  +++L  G+G  +L LA+ 
Sbjct: 73  YFRYLELQVGPGVF--VPRPETESVVGWAIDAVRAMDVVEPCIVDLCTGSGAIALALAQE 130

Query: 231 F--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
               RV AVE+++ ++   R N+  + V+               +R+        D+D  
Sbjct: 131 VPRSRVHAVELSEDALRWTRKNVEGSRVD---------------LRQGDALTAFPDLD-- 173

Query: 289 SYRFKTIFVDPP 300
             +   +  +PP
Sbjct: 174 -GQVDLVISNPP 184


>gi|260826854|ref|XP_002608380.1| hypothetical protein BRAFLDRAFT_126240 [Branchiostoma floridae]
 gi|229293731|gb|EEN64390.1| hypothetical protein BRAFLDRAFT_126240 [Branchiostoma floridae]
          Length = 326

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 22/105 (20%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
           +E L    RTL YR         NA   N H+              +L++ CG G   + 
Sbjct: 18  EEMLKDEVRTLTYR---------NAMYQNKHL---------FKDKIVLDVGCGTGILCMF 59

Query: 227 LARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
            AR    +V+ +E +   VE A   I  N++++ V IVR   +E 
Sbjct: 60  AARAGAKKVIGIECSSI-VEHAIKIIEDNNLDHIVTIVRGKVEEV 103


>gi|297196307|ref|ZP_06913705.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197722884|gb|EDY66792.1| methyltransferase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 221

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           + + +         ++L++  G G  +L  AR   RV AV+ +  +V A R N       
Sbjct: 24  LADALEREPLKPGAEVLDVGTGTGALALTAARRGARVTAVDRSWRAVVATRLNAVLAR-R 82

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            V+++     +   AM R  +        + +         PPR G  
Sbjct: 83  RVRVLHGDLLD--PAMGRRFDLIVCNPPYVPAPH-----AHPPRRGAA 123


>gi|170731925|ref|YP_001763872.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           MC0-3]
 gi|226710057|sp|B1JVC0|PRMA_BURCC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169815167|gb|ACA89750.1| ribosomal protein L11 methyltransferase [Burkholderia cenocepacia
           MC0-3]
          Length = 300

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR N   N  
Sbjct: 156 MEWLEQSVKPGQS-VLDYGCGSGILAI-LAKKCGANPVIGIDIDPQAVESARQNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|18977431|ref|NP_578788.1| hypothetical protein PF1059 [Pyrococcus furiosus DSM 3638]
 gi|18893124|gb|AAL81183.1| hypothetical protein PF1059 [Pyrococcus furiosus DSM 3638]
          Length = 391

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + ++ CG G   +  A+H    + V+I    +E A+ N     V N+K +   S +
Sbjct: 92  VADVSCGVGIQLIFFAKHGIESIGVDIDPIKIEFAKRNADKYGV-NIKFIVGDSLD 146


>gi|77734463|emb|CAJ26238.1| hypothetical protein [Thermotoga petrophila RKU-1]
          Length = 188

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +L         +L++ CG G F++ +A+    V+ ++++   +E AR       V  V 
Sbjct: 5   KILENFHVRGKKVLDVACGEGTFAVEIAKQGFEVVGIDLSPEMLEFARKRAKEESVP-VV 63

Query: 261 IVRMSSKEF 269
            ++   +E 
Sbjct: 64  FLKKDMREL 72


>gi|254246385|ref|ZP_04939706.1| Ribosomal protein L11 [Burkholderia cenocepacia PC184]
 gi|124871161|gb|EAY62877.1| Ribosomal protein L11 [Burkholderia cenocepacia PC184]
          Length = 300

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW+  + K  Q  +L+  CG+G  ++ LA+      V+ ++I   +VE+AR N   N  
Sbjct: 156 MEWLEQSVKPGQS-VLDYGCGSGILAI-LAKKCGANPVIGIDIDPQAVESARQNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|330994302|ref|ZP_08318230.1| hypothetical protein SXCC_04195 [Gluconacetobacter sp. SXCC-1]
 gi|329758769|gb|EGG75285.1| hypothetical protein SXCC_04195 [Gluconacetobacter sp. SXCC-1]
          Length = 424

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 200 EWVLAATKGIQG--DLLELYCGNGNFSLVLARH------FDRVLAVEIAKPSVEAARYNI 251
            WV  A +       +L   CG G+ +++LA H         VL ++ +  ++E AR   
Sbjct: 53  YWVFGAMRPQSTPLRVLVAGCGTGDGAIMLATHMARAGRGGEVLCLDRSPRALEIARGRA 112

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
               + N++ VR              ++     +  H      
Sbjct: 113 EIRGLGNMRFVRGDLSSLATVAPGPFDYIDCCGVLHHLPDPDA 155


>gi|310821873|ref|YP_003954231.1| hypothetical protein STAUR_4624 [Stigmatella aurantiaca DW4/3-1]
 gi|309394945|gb|ADO72404.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 238

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYN-IAANHVNNVKIVR 263
             G     L++ CG G     L       V+ V++++  +E AR     A     +  V+
Sbjct: 52  PPGAIARALDVGCGTGAAMRHLRPLCRQEVVGVDLSRGMLEEARRRQADAPGEATLTFVQ 111

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
            ++ + T     E EF+ +       +  +    D PR  L       ++     +++S 
Sbjct: 112 GNALDLT----YEAEFDAVTSFGAFGHILEE---DEPR--LVQRIARALRPGGRFIFVSA 162

Query: 324 NPDSLCRDLSILSTTHTIER 343
           +P S+      LS  + + R
Sbjct: 163 HPPSM------LSPGYWLAR 176


>gi|41408894|ref|NP_961730.1| hypothetical protein MAP2796c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397253|gb|AAS05113.1| hypothetical protein MAP_2796c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 250

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A   ++G++L+   G G+ ++  A        ++ +  ++E AR N     V+ V   
Sbjct: 44  LVALGAVKGEVLDPGTGPGHHAIYYASQGFSATGIDGSAAAIERARANARKAGVS-VNFE 102

Query: 263 RMSSKEF 269
              + + 
Sbjct: 103 LADATKL 109


>gi|159113791|ref|XP_001707121.1| PRIP-interacting protein PIPMT [Giardia lamblia ATCC 50803]
 gi|157435224|gb|EDO79447.1| PRIP-interacting protein PIPMT [Giardia lamblia ATCC 50803]
          Length = 300

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            H +  VL+     +G +L+L+ G G  ++  A     V ++E ++        N     
Sbjct: 65  AHTIAKVLSNHIQRRGYVLDLFGGAGGQAIGFALEGHSVHSIEYSEQHCALIHNNARVYG 124

Query: 256 VNNVKI-VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V+++   V      FTQA+       R         ++  + + PP  G
Sbjct: 125 VSHLVFPVCCDV--FTQAL-------RFCTSGATPQKYDCVVLSPPWGG 164


>gi|317484468|ref|ZP_07943380.1| hypothetical protein HMPREF0179_00731 [Bilophila wadsworthia 3_1_6]
 gi|316924292|gb|EFV45466.1| hypothetical protein HMPREF0179_00731 [Bilophila wadsworthia 3_1_6]
          Length = 243

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + +W+    + ++G   L+L CG G  +LV       V+ ++    ++  AR N   N V
Sbjct: 81  LADWLYQRRESLRGQPCLDLGCGIGLTALVAQWLGANVIGMDYEPEALRFARRNAEHNAV 140

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                  M  ++   A++R           ++  RF    +D     L +     V    
Sbjct: 141 PQPLWTVMDWRK--PAVKRRSLRFIWGGDIMYEQRFAAPVLDFLEYALAEGGAAWVAEPS 198

Query: 317 HILY 320
             +Y
Sbjct: 199 RAVY 202


>gi|308500069|ref|XP_003112220.1| hypothetical protein CRE_29769 [Caenorhabditis remanei]
 gi|308268701|gb|EFP12654.1| hypothetical protein CRE_29769 [Caenorhabditis remanei]
          Length = 571

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAM 273
           + + G G  ++  A     V+A+++    ++ AR N     V + +  +     +     
Sbjct: 399 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVADYIDFICADFFDVAATW 458

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
             +++          + +   +F+ PP  G
Sbjct: 459 AADKKL---------APKVDAVFLSPPWGG 479


>gi|308177324|ref|YP_003916730.1| SAM-dependent methyltransferase [Arthrobacter arilaitensis Re117]
 gi|307744787|emb|CBT75759.1| SAM-dependent methyltransferase [Arthrobacter arilaitensis Re117]
          Length = 202

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 7/117 (5%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           + A       +L+  CG G     L+    +V+ V++    ++ AR           +  
Sbjct: 44  VDAMVARGSRILDAGCGTGRIGGWLSEQGHQVVGVDLDPHLIDVARV-----DYPKAQWQ 98

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
             +  +FT A        +  D+ + +    T   +  R          + A   ++
Sbjct: 99  VGNLADFTIAGAAGE--RQEFDLIVSAGNVVTFLSESERLPALQQLREQLAADGRMI 153


>gi|242207574|ref|XP_002469640.1| predicted protein [Postia placenta Mad-698-R]
 gi|220731257|gb|EED85103.1| predicted protein [Postia placenta Mad-698-R]
          Length = 273

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
           ++  L+  Y++       R+  +R +ENS          ++L+++          +L++ 
Sbjct: 2   SQPVLEAAYINGHHESVLRSHNWRTVENS--------AAYLLKYIRPNMH-----VLDVG 48

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           CG G+ ++  AR       + +E     +  AR + +A  + NV+     +
Sbjct: 49  CGPGSITIDFARLVPQGHAVGIENTSDVLAEARASASAQCITNVEFRLGDA 99


>gi|254428282|ref|ZP_05041989.1| 3-demethylubiquinone-9 3-methyltransferase [Alcanivorax sp. DG881]
 gi|196194451|gb|EDX89410.1| 3-demethylubiquinone-9 3-methyltransferase [Alcanivorax sp. DG881]
          Length = 266

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 45/113 (39%), Gaps = 1/113 (0%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            NS  +P   IN   L ++          ++++ CG G  S  +AR    V  +++ +  
Sbjct: 33  PNSQFRPLHDINPLRLNYIDERVSLPGKKVIDIGCGGGLLSEGMARRGAEVTGIDMGEAP 92

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           +  AR +     V  V+ ++  +++  +    + +     ++  H     ++ 
Sbjct: 93  LAVARIHAEQAGVA-VEYLQTPAEQIAEQRAGQYDVVTCLEMLEHVPDPSSVI 144


>gi|150402304|ref|YP_001329598.1| NOL1/NOP2/sun family RNA methylase [Methanococcus maripaludis C7]
 gi|150033334|gb|ABR65447.1| putative RNA methylase, NOL1/NOP2/sun family [Methanococcus
           maripaludis C7]
          Length = 265

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                 D+L++    G  +  LA+   +   +LAVEI K  +++ R NI      N  ++
Sbjct: 74  NPSKDDDVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMI 133

Query: 263 RMSSKEFTQAMRREREF-------NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             ++    + +R ++         N +KD +    +   +F    +  L    + +++  
Sbjct: 134 NTNAVNLDKKLRFDKILLDAPCTGNEIKDSNRVKTKRDILFCAKRQVELFRTAIEVLKDG 193

Query: 316 PHILYISCNPD 326
             ++Y +C+P+
Sbjct: 194 GELVYSTCSPE 204


>gi|145223830|ref|YP_001134508.1| methyltransferase type 12 [Mycobacterium gilvum PYR-GCK]
 gi|315444160|ref|YP_004077039.1| ribosomal protein L11 methylase [Mycobacterium sp. Spyr1]
 gi|145216316|gb|ABP45720.1| Methyltransferase type 12 [Mycobacterium gilvum PYR-GCK]
 gi|315262463|gb|ADT99204.1| ribosomal protein L11 methylase [Mycobacterium sp. Spyr1]
          Length = 206

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 23/49 (46%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
               G  +EL CG G  ++ LAR   RV A +I+  +V AA      + 
Sbjct: 37  FPTAGYAIELACGTGAAAVWLARRGLRVWACDISPVAVAAATERARLDG 85


>gi|327398623|ref|YP_004339492.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Hippea
           maritima DSM 10411]
 gi|327181252|gb|AEA33433.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Hippea
           maritima DSM 10411]
          Length = 200

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 23/124 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANH 255
           MLE +          +L++ CG+   + +LA+   +  V+ VEI K  VE  + N+    
Sbjct: 67  MLELL---QPKEDSHILDVGCGSCYTTALLAKIAKKGKVVGVEIDKKLVEFCKSNLRKYD 123

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            NN++I                       +     +F  I V      L +  +  ++  
Sbjct: 124 FNNIEIYNAD------------------KLPPTKSKFDRILVSAAAERLPEELLNALKEG 165

Query: 316 PHIL 319
             ++
Sbjct: 166 GRMV 169


>gi|325526306|gb|EGD03917.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia sp. TJI49]
          Length = 172

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +         ++L +  G+G  + ++A     V AV+I    V+ A  N+
Sbjct: 63  PRVEARVLQELAVKKHE---NVLVIGAGSGYLAALIAHRAQHVTAVDIDPAIVKFAADNL 119

Query: 252 AANHVNNVKIVRMS 265
             N V N ++V   
Sbjct: 120 RDNGVTNAEVVLGD 133


>gi|319785978|ref|YP_004145453.1| methyltransferase type 12 [Pseudoxanthomonas suwonensis 11-1]
 gi|317464490|gb|ADV26222.1| Methyltransferase type 12 [Pseudoxanthomonas suwonensis 11-1]
          Length = 223

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            +L   +         +LEL CG G  SLVL R    V+A ++   +     YN A N +
Sbjct: 57  QLLARAMEDFDIGAKRILELGCGIGLASLVLQRRGADVVASDMHPLAEVFLAYNAALNGL 116

Query: 257 NNVKIVRM 264
             +    +
Sbjct: 117 PALHYRHL 124


>gi|307297441|ref|ZP_07577247.1| Methyltransferase type 11 [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916701|gb|EFN47083.1| Methyltransferase type 11 [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 256

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +E +L       G  L++  G G ++L LA     V+ V++++  +  A        +  
Sbjct: 31  VERLLEDHVKTIGRTLDIGTGTGRWALYLAEKAHEVVGVDLSQEMLSVASMKAGLADLK- 89

Query: 259 VKIVRMSSKEF 269
           +  V  +++  
Sbjct: 90  IDFVHSNAERL 100


>gi|307243294|ref|ZP_07525461.1| ribosomal protein L11 methyltransferase [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493312|gb|EFM65298.1| ribosomal protein L11 methyltransferase [Peptostreptococcus
           stomatis DSM 17678]
          Length = 316

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           L         + ++ CG+G   +V A+     V+ ++I   +V+ A  NI  N V ++
Sbjct: 173 LEKYVDKDSTVFDIGCGSGILGIVAAKLGAKDVVGIDIDAVAVKVANENILMNGVQDI 230


>gi|322434295|ref|YP_004216507.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acidobacterium sp. MP5ACTX9]
 gi|321162022|gb|ADW67727.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acidobacterium sp. MP5ACTX9]
          Length = 282

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 18/109 (16%)

Query: 195 NVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251
             H++E V A         +L++  G+G  ++ LA       + A++I+  ++E A+ N 
Sbjct: 99  TEHLVEAVAARVPHNRPVRILDVGTGSGAIAIALAHLLPHAHITALDISPEAIEIAQENA 158

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             NH+               A R + + + L         F  I  +PP
Sbjct: 159 RTNHL---------------AARIDFQQSDLFTAVTKGPPFAAIVSNPP 192


>gi|284045682|ref|YP_003396022.1| methyltransferase type 11 [Conexibacter woesei DSM 14684]
 gi|283949903|gb|ADB52647.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684]
          Length = 274

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V A   G + ++L++  G GN S+  A+    V A ++    +EA R+      V+ ++ 
Sbjct: 39  VEACVIGPEAEVLDVAAGTGNASIPAAQRGASVTASDLTPELLEAGRHRAEDEGVD-LRW 97

Query: 262 VRMSSKEF 269
           V   +++ 
Sbjct: 98  VAADAEQL 105


>gi|260655696|ref|ZP_05861169.1| putative methyltransferase [Jonquetella anthropi E3_33 E1]
 gi|260629613|gb|EEX47807.1| putative methyltransferase [Jonquetella anthropi E3_33 E1]
          Length = 246

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 16/111 (14%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYN 250
             +N+  +          +   LEL C  G  ++++A R    V  +EI +  VE AR N
Sbjct: 22  PRVNMDTILLAGFVRLKRRERALELGCATGGVAMLMAWRSSAHVTGLEIDQRFVELARQN 81

Query: 251 IAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +N + + +  V       TQ   R                +  +  +PP
Sbjct: 82  AESNGLSDRLSFVCGD---LTQLWGR-----------GQGGEYDVVAANPP 118


>gi|260578988|ref|ZP_05846890.1| N6-adenine-specific methylase [Corynebacterium jeikeium ATCC 43734]
 gi|258602853|gb|EEW16128.1| N6-adenine-specific methylase [Corynebacterium jeikeium ATCC 43734]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L+ G+G   L   +R    V  V+ +  +V+  + N        V++V   +  F  
Sbjct: 47  VLDLFAGSGALGLEAASRGAKEVTLVDNSDAAVKVIKDNARVVPEAKVQVVEAKASSFLA 106

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
              R                +  +  DPP    D+A   MV+A
Sbjct: 107 GAPR--------------NHYTMVLADPPYELADEAVAEMVEA 135


>gi|255024743|ref|ZP_05296729.1| hypothetical protein LmonocyFSL_17011 [Listeria monocytogenes FSL
           J1-208]
          Length = 196

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 30/113 (26%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G +L++ CG G   L +A+     ++  V++   ++E A+ N   N + N  I   S  
Sbjct: 55  TGKILDVGCGYGPMGLTVAKALPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVY 114

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           +                 ++ +  ++ I  +PP           ++A   I++
Sbjct: 115 D-----------------NVTANDYQAIISNPP-----------IRAGKRIVH 139


>gi|218886415|ref|YP_002435736.1| Lipocalin [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757369|gb|ACL08268.1| Lipocalin [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 260

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + EW+      +QG   L+L CG G  +++      +V+ ++  + ++  AR N A N V
Sbjct: 95  LAEWLAENRAALQGRRCLDLGCGLGLTAIIGQWLGAQVIGMDYEEEALRFARLNAARNGV 154

Query: 257 NNVKIVRMS 265
                  M 
Sbjct: 155 AQPLWTAMD 163


>gi|119720100|ref|YP_920595.1| methyltransferase type 11 [Thermofilum pendens Hrk 5]
 gi|119525220|gb|ABL78592.1| Methyltransferase type 11 [Thermofilum pendens Hrk 5]
          Length = 256

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 193 GINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           G  V  LE V      I    +L++ CG G  ++ L R   R + V+I++  +E AR   
Sbjct: 21  GAEVDFLERVFRDYSLIPVKSVLDVGCGTGLHTIELGRRGYRAVGVDISQNMLEVARS-- 78

Query: 252 AANHVNNVKIVRMSSKEF 269
            A  + NV+ +   + + 
Sbjct: 79  KAREMTNVEFILSDATKL 96


>gi|193069730|ref|ZP_03050681.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli E110019]
 gi|192956932|gb|EDV87384.1| ribosomal large subunit L3 protein glutamine methyltransferase
           [Escherichia coli E110019]
          Length = 310

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISKQPQHILDMCTGSGCIAIACAYAFPESEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|330466260|ref|YP_004404003.1| putative methyltransferase [Verrucosispora maris AB-18-032]
 gi|328809231|gb|AEB43403.1| putative methyltransferase [Verrucosispora maris AB-18-032]
          Length = 187

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 13/122 (10%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +   V A    +     +LY G+G   L  L+R    VL VE    +    R N+A
Sbjct: 29  VREALFSSVQAELDLVGARFADLYAGSGAVGLEALSRGAGHVLLVESDARAARVIRENMA 88

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              +      R+ + + +  +    +             +  +F DPP S  DD    M+
Sbjct: 89  I--LRAAPAARLVTGKVSTVLAAGPD----------GEPYDVVFADPPYSLSDDGVRAML 136

Query: 313 QA 314
            A
Sbjct: 137 TA 138


>gi|326437447|gb|EGD83017.1| hypothetical protein PTSG_03653 [Salpingoeca sp. ATCC 50818]
          Length = 495

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVN 257
              A   G    +LEL CG G  S+ LA+     RV+A + +  ++     N   N + 
Sbjct: 240 QAKAPLAGPPVTVLELGCGTGLLSMALAKLWPGTRVIATDRSAEALARCAANCRFNGIR 298


>gi|322376709|ref|ZP_08051202.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus sp. M334]
 gi|321282516|gb|EFX59523.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus sp. M334]
          Length = 278

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 75/200 (37%), Gaps = 44/200 (22%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + + +  ++    +   L A K    +IG A         D+   +L V  R LI R   
Sbjct: 45  QEVTEEEKQFVKEIYQQLAAHKPAQYIIGHA---------DFFGMQLIVDERVLIPRPE- 94

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKP 242
                        ++E +L         +L++  G+G  +L L+++     V A +I++ 
Sbjct: 95  ----------TEELVEIILDENHEENLSVLDIGTGSGAIALALSKNRPDWSVTAADISQE 144

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-- 300
           ++E A  N       N++I    S  FT+                 S ++  I  +PP  
Sbjct: 145 ALELASENAKN---QNLQIFLKKSDCFTE----------------ISEKYDIIVSNPPYI 185

Query: 301 -RSGLDDATVGMVQAYPHIL 319
            R    +  + ++ + PH+ 
Sbjct: 186 SREDESEVGLNVLHSEPHLA 205


>gi|260888376|ref|ZP_05899639.1| SAM-dependent methyltransferase [Selenomonas sputigena ATCC 35185]
 gi|330838309|ref|YP_004412889.1| Methyltransferase type 11 [Selenomonas sputigena ATCC 35185]
 gi|260861912|gb|EEX76412.1| SAM-dependent methyltransferase [Selenomonas sputigena ATCC 35185]
 gi|329746073|gb|AEB99429.1| Methyltransferase type 11 [Selenomonas sputigena ATCC 35185]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 53/172 (30%), Gaps = 19/172 (11%)

Query: 192 AGINVHMLE-WVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKP-----S 243
             +   ++E           G +L++ CG+G  ++  A+     + + V++ +      S
Sbjct: 99  RQLARQIVEGTAAFVKLPAGGRILDVGCGSGALTIACAKGNPACQAIGVDLWRGVYASFS 158

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEF-TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                 N AA  V N +     + +        +   +     +I     +T+  +  R 
Sbjct: 159 QRICEENAAAEGVTNTEFRPGDALKLDFPDESFDAVTSNYVYHNIPKISGQTMLEETLRV 218

Query: 303 GLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFD----QF 350
                   +        Y   + ++      +    +  E + L D     F
Sbjct: 219 LKKGGVFAIHDIMERGKYG--DMEAFA--AKLRDEGY--EEVKLLDTAKGMF 264


>gi|188995461|ref|YP_001929713.1| hypothetical protein PGN_1597 [Porphyromonas gingivalis ATCC 33277]
 gi|188595141|dbj|BAG34116.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
           33277]
          Length = 401

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAAN--HVN 257
             L         +L ++C +G FSL   R    +V +V+ +  +V     N+A N    +
Sbjct: 219 RALLEEYASGRKVLNMFCYSGGFSLYAMRGGAYKVHSVDSSARAVHLLEKNMALNFAGDD 278

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             +     +  F   M                  +  I +DPP        + 
Sbjct: 279 RHESYAADAFHFLDEM--------------AVGAYDLIVLDPPAFAKHRKVLR 317


>gi|52222860|gb|AAU34201.1| methyltransferase MppJ [Streptomyces hygroscopicus]
          Length = 337

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 22/172 (12%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           Q++   N+T     RD     ++ A R +  R  + +F               +      
Sbjct: 113 QVLPNENRTGKFYQRDAG--AISYACREISERYFDPAFW------------AAVDGLGYT 158

Query: 210 QGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
              + +L  G+G   + +AR F  V  L V+IA  ++  A   +AA    + +  VR  +
Sbjct: 159 PTTVADLGSGSGERLIQIARRFPGVRGLGVDIADGAIAMAEKEVAAKGFGDQISFVRGDA 218

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           +   Q   R  EF  +  +              PR         +  A+P++
Sbjct: 219 RTIDQVSAR-GEFAEVDLLTCFMMGHDFW----PRENCVQTLRKLRAAFPNV 265


>gi|68465011|ref|XP_723583.1| hypothetical protein CaO19.4901 [Candida albicans SC5314]
 gi|46445621|gb|EAL04889.1| hypothetical protein CaO19.4901 [Candida albicans SC5314]
          Length = 164

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA----RYNIAANHVNN------VKIVR 263
           ++L CG G  +  L      V+ V+++   +E A      N+    +NN      +K + 
Sbjct: 50  IDLGCGTGVATYPLLNISTNVIGVDLSSKMIETANSLIEKNLQTLGINNSTSTPRIKFIT 109

Query: 264 MSSKEFTQAMRREREFN 280
            S +EF +  ++ ++ N
Sbjct: 110 GSVEEFVKQQQQNKDHN 126


>gi|320162923|gb|EFW39822.1| tRNA methyltransferase Trm5 [Capsaspora owczarzaki ATCC 30864]
          Length = 543

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 171 LTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           + V     I+R     F++   N+ +      W +           ++  G G F++ +A
Sbjct: 262 VEVKESGCIFRF---DFSRVYFNSRLQQE--HWRIIQGCPAPNVACDMMAGVGPFAIPIA 316

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDI 287
           +    V A ++   + E+   N  AN V + V       ++F + +      + L     
Sbjct: 317 KQKCVVYANDLNPVAFESLLVNAKANKVAHLVHASNQDGRKFVRDLAVRILASHLSGKPN 376

Query: 288 HSYRFKTIFVDPP 300
               F  + ++ P
Sbjct: 377 PLPAFTQVMMNLP 389


>gi|284038796|ref|YP_003388726.1| methyltransferase type 11 [Spirosoma linguale DSM 74]
 gi|283818089|gb|ADB39927.1| Methyltransferase type 11 [Spirosoma linguale DSM 74]
          Length = 298

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           A       +++L  G GN    +ARH      +V+ ++  +  +  AR N      NNV+
Sbjct: 73  AQIKPGDTVIDLGSGAGN-DCFVARHETGPTGKVIGIDFTEAMISRARKNADTLGYNNVE 131

Query: 261 IVRMSSKEFTQA 272
                 +E   A
Sbjct: 132 FRFGDIEEMPVA 143


>gi|224826229|ref|ZP_03699331.1| ribosomal protein L11 methyltransferase [Lutiella nitroferrum 2002]
 gi|224601330|gb|EEG07511.1| ribosomal protein L11 methyltransferase [Lutiella nitroferrum 2002]
          Length = 298

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 28/152 (18%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W+ A  KG +  +L+  CG+G  ++  L       + ++I   +V A++ N A N V 
Sbjct: 154 LQWLDANIKGGES-VLDYGCGSGILAIAALKLGAASAVGIDIDPQAVRASQDNAAQNQVV 212

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
             +     +                     +      I  +P R  L +   G V+A   
Sbjct: 213 -ARFYLPDAT----------------PPAQYDVVLANILANPLRL-LGELLSGHVRAGGK 254

Query: 318 ILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349
           I+        L      LS  +       FD 
Sbjct: 255 IVLS----GILQEQAEELSAIY----ATWFDM 278


>gi|163792967|ref|ZP_02186943.1| Sam dependent methyltransferase [alpha proteobacterium BAL199]
 gi|159181613|gb|EDP66125.1| Sam dependent methyltransferase [alpha proteobacterium BAL199]
          Length = 313

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 15/122 (12%)

Query: 189 QPN-AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q +   +   + +   A        +L L+   G  SL+ A    +V  V+ +K ++  A
Sbjct: 119 QVHWNRVLAAVEQRARARVGNEPPTVLNLFGYTGMASLLPAAAGAKVTHVDASKKAISWA 178

Query: 248 RYNIAANHVNNV--KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           R N   + ++    + +   +  F       RE  R         R+  I +DPP+ G  
Sbjct: 179 RANQEMSGLSAAPIRWICDDAARF-----AAREVRR-------GSRYDIIVLDPPKYGRG 226

Query: 306 DA 307
             
Sbjct: 227 PK 228


>gi|71278012|ref|YP_270225.1| HemK family modification methylase [Colwellia psychrerythraea 34H]
 gi|71143752|gb|AAZ24225.1| modification methylase, HemK family [Colwellia psychrerythraea 34H]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 30/166 (18%)

Query: 175 GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLA--RHF 231
             +L +R    +   P       ++E VL     +     L+L  G G  +L LA  +  
Sbjct: 81  FWSLPFRVSPATLI-PRPD-TEVLVELVLEHFGELDTLHCLDLGTGTGAIALALASEQPN 138

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR 291
            ++ A++ +  +V+ A+ N    H+++V I +               FN      ++  +
Sbjct: 139 WQIDAIDFSLDAVKLAKQNAQDLHLSHVNIFQSD------------WFN-----AVNERK 181

Query: 292 FKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS-LCRDLSILS 336
           F  I  +PP     D  +           + C P+S L  D   L 
Sbjct: 182 FDVIVSNPPYIDALDKHLSQGD-------VRCEPESALVADEQGLG 220


>gi|21243111|ref|NP_642693.1| 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|24418725|sp|Q8PK00|UBIG_XANAC RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|21108628|gb|AAM37229.1| 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 239

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +N   LE+V A  +     +L++ CG G  S  +AR   +V A+++A   V+ AR + 
Sbjct: 38  HALNPVRLEYVSARLEPAGARVLDVGCGGGLLSESMARLGAQVTAIDLAPELVKVARLHS 97

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
             + V  V     S ++         +     ++  H      I 
Sbjct: 98  LESGVQ-VDYRVQSVEDLAAEQAGSFDAVTCMEMLEHVPDPTAII 141


>gi|309806665|ref|ZP_07700661.1| methyltransferase small domain protein [Lactobacillus iners LactinV
           03V1-b]
 gi|308166970|gb|EFO69153.1| methyltransferase small domain protein [Lactobacillus iners LactinV
           03V1-b]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I G++L++  G G   L  A+     RV  +++ + ++  A+ N   N ++NV I    
Sbjct: 60  EISGNILDVGTGYGPLGLFAAKLWPKSRVTMIDVNERALALAKRNAQLNEIDNVNIFSSD 119

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                        +  L + +    +F  I  +PP          ++Q    
Sbjct: 120 C------------YRNLDEQE----QFGLILTNPPIRAGKQVVDDILQNAKK 155


>gi|258516360|ref|YP_003192582.1| 50S ribosomal protein L11 methyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780065|gb|ACV63959.1| ribosomal protein L11 methyltransferase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 307

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
                 M   +L         ++++  G+G  ++  A+     V AV+    +V  A  N
Sbjct: 149 THATTVMCMELLEEYLRPGDRVIDVGTGSGILAVTAAKLGAGSVRAVDNDPVAVRVALEN 208

Query: 251 IAANHVNN 258
              N V +
Sbjct: 209 AELNGVTD 216


>gi|225849651|ref|YP_002729885.1| methyltransferase [Persephonella marina EX-H1]
 gi|225645532|gb|ACO03718.1| methyltransferase [Persephonella marina EX-H1]
          Length = 394

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 41/196 (20%)

Query: 153 GRANKTKICLDRDYVDERLTVAGRTLIYRQI-----ENSFT--Q-PNAGINVHMLEWVLA 204
           G   + K+   +  V E + +    + +        +  F   Q  N  I        ++
Sbjct: 164 GLKTENKVVYGK--VPESIVIHENGVKFYIQLEKGQKTGFYLDQRINRFI--------VS 213

Query: 205 ATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                   +L+L+   G F +    +    +  V+I+K +V     N   N +    + R
Sbjct: 214 EYIKEGDSVLDLFSNAGGFGIYAGIKGAKDITFVDISKNAVSLIDKNCELNGIKGYTVYR 273

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHILYIS 322
            +  +F            L D      R+  I +DPP    +       ++ +  ++   
Sbjct: 274 ENVFKF------------LTDSGSMDKRYDLIILDPPSFAKNRYEVKDAIRGFKFLI--- 318

Query: 323 CNPDSLCRDLSILSTT 338
                  R L IL+  
Sbjct: 319 ------SRSLEILNDG 328


>gi|212634019|ref|YP_002310544.1| rRNA (guanine-N(2)-)-methyltransferase [Shewanella piezotolerans
           WP3]
 gi|212555503|gb|ACJ27957.1| rRNA (guanine-N(2)-)-methyltransferase [Shewanella piezotolerans
           WP3]
          Length = 412

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 17/104 (16%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA--VEIAKPSVEAARYNIAANHVNNV 259
           +    KG    +++L CGNG   L   + F       ++ ++ SV +AR N A N ++N 
Sbjct: 225 LDNMPKGDFKSIVDLGCGNGILGLHAKQCFPEAYIHFIDDSEMSVASARDNWALNKLDN- 283

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIH---SYRFKTIFVDPP 300
                       A+  E+      D   H    +R   I  +PP
Sbjct: 284 -----------PALVGEQATFAWDDCLTHMSEGFRPDLILCNPP 316


>gi|157963792|ref|YP_001503826.1| putative methyltransferase [Shewanella pealeana ATCC 700345]
 gi|157848792|gb|ABV89291.1| putative methyltransferase [Shewanella pealeana ATCC 700345]
          Length = 209

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 53/135 (39%), Gaps = 23/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+    +G    +L+ + G+G  SL  L+R+       E+   + +    N+A
Sbjct: 38  VRETLFNWIANDVRGS--RVLDCFAGSGALSLESLSRYASYAKIFELQAQAAKQLIANLA 95

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
               +N  +++  S                   +  S  F  +F+DPP R  L + ++ +
Sbjct: 96  TLKCDNADVIKGDSLALLA--------------NKPSEGFDLVFIDPPFRKSLAEKSISL 141

Query: 312 V-----QAYPHILYI 321
           +       +  ++Y+
Sbjct: 142 IDQHQWLNHDALIYV 156


>gi|115373047|ref|ZP_01460350.1| putative methyltransferase [Stigmatella aurantiaca DW4/3-1]
 gi|115369959|gb|EAU68891.1| putative methyltransferase [Stigmatella aurantiaca DW4/3-1]
          Length = 244

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYN-IAANHVNNVKIVR 263
             G     L++ CG G     L       V+ V++++  +E AR     A     +  V+
Sbjct: 58  PPGAIARALDVGCGTGAAMRHLRPLCRQEVVGVDLSRGMLEEARRRQADAPGEATLTFVQ 117

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
            ++ + T     E EF+ +       +  +    D PR  L       ++     +++S 
Sbjct: 118 GNALDLT----YEAEFDAVTSFGAFGHILEE---DEPR--LVQRIARALRPGGRFIFVSA 168

Query: 324 NPDSLCRDLSILSTTHTIER 343
           +P S+      LS  + + R
Sbjct: 169 HPPSM------LSPGYWLAR 182


>gi|84490323|ref|YP_448555.1| hypothetical protein Msp_1545 [Methanosphaera stadtmanae DSM 3091]
 gi|84373642|gb|ABC57912.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091]
          Length = 197

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 44/94 (46%), Gaps = 12/94 (12%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           E +       +Y   E++F          +++ ++         +LE+ CG G  S+  +
Sbjct: 4   ENIKYNECDEVYPPAEDTFL---------LIDNLIVKNNDS---VLEVGCGCGIVSIAAS 51

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
            + ++V +++I   +++  + NI  N+  N++++
Sbjct: 52  LNAEKVTSIDINPHAIKCTKENIKLNNRKNIEVI 85


>gi|282879235|ref|ZP_06287985.1| conserved domain protein [Prevotella buccalis ATCC 35310]
 gi|281298628|gb|EFA91047.1| conserved domain protein [Prevotella buccalis ATCC 35310]
          Length = 43

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 349 QFPYTRHMECGVLLVRKPSGWH 370
            FP T H+E   LL +  +  H
Sbjct: 1   MFPQTMHVETVALLSKLNTEHH 22


>gi|284036503|ref|YP_003386433.1| methyltransferase type 12 [Spirosoma linguale DSM 74]
 gi|283815796|gb|ADB37634.1| Methyltransferase type 12 [Spirosoma linguale DSM 74]
          Length = 255

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 13/131 (9%)

Query: 193 GINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 LE ++       GD LL+++CG G  +L LAR    V  V+I+   +   +   
Sbjct: 23  EQTQLDLELLVETLDFGPGDRLLDIFCGYGRHALPLARMGTYVTGVDISSEYIAELQATA 82

Query: 252 AANHVNNVKIVR----------MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP- 300
            A  ++   I              +  F         F+     D+ ++  +   +  P 
Sbjct: 83  KAEKLSVTAIEADFMAVTESEIGDAAGFDAGYCLGNSFSFFAHADMLAFLTRIARLLKPG 142

Query: 301 -RSGLDDATVG 310
            R       + 
Sbjct: 143 GRFLAHSEMIA 153


>gi|284031360|ref|YP_003381291.1| type 12 methyltransferase [Kribbella flavida DSM 17836]
 gi|283810653|gb|ADB32492.1| Methyltransferase type 12 [Kribbella flavida DSM 17836]
          Length = 211

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N  ++  V        G  L+L CG G  ++ LA     V AV+I+  ++E A  +    
Sbjct: 28  NAALVHEVAGL---TPGTALDLGCGEGADAIWLAGQGWTVTAVDISAVALERAARHAEQA 84

Query: 255 HVNN 258
            V +
Sbjct: 85  GVAD 88


>gi|188587917|ref|YP_001922499.1| SAM-dependent methyltransferase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498198|gb|ACD51334.1| SAM-dependent methyltransferase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 250

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 76/205 (37%), Gaps = 27/205 (13%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I LD D V + L + G  LI +     F     G++  +L     A    +  +++L  G
Sbjct: 7   INLDTDEVIDDLQLKGLQLIQKVNGFKF-----GVDAVILS--DFANIKNKHRVIDLCTG 59

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
            G    +L   +    +  +EI +  V+ A  ++  N + +   +     +  + +++  
Sbjct: 60  TGIIPFLLYGKYNPKEIYGLEIQEEMVKMAEKSVKLNALEDKITIIKEDLKNIEYLKKMD 119

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS-----CN-------- 324
           +F+ +     +      I    P   L  A   ++     ++Y S      N        
Sbjct: 120 KFDVVTVNPPYKLNNAGIIN--PSDKLAIARHEVLCNLEDVIYASKILLKDNGRMFIVHR 177

Query: 325 PDSLCRDLSILSTTHTIE--RLALF 347
           P+ L  D+  L   + IE  R+ + 
Sbjct: 178 PERLA-DIFTLMRKYKIEPKRVRMV 201


>gi|145298928|ref|YP_001141769.1| 3-demethylubiquinone-9 3-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|166234758|sp|A4SM99|UBIG_AERS4 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|142851700|gb|ABO90021.1| 3-demethylubiquinone-9 3-methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 238

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L+W+   + G+ G  +L++ CG G  S  +AR    V  +++ K  +  AR +
Sbjct: 33  HQINPVRLDWITDKSGGLFGKRILDIGCGGGILSESMARRGAHVTGIDMGKEPLGVARLH 92

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI---FVDPPRSGLDDA 307
                V  ++  +M+++E       + +     ++  H     ++        R G    
Sbjct: 93  ALEQGVE-LQYQQMTAEEHASQTPDQYDVVTCMEMLEHVPDPASVLRAIATLVRPG-GRV 150

Query: 308 TVGMVQAYPH 317
            +  +   P 
Sbjct: 151 FISTINRNPK 160


>gi|138894633|ref|YP_001125086.1| methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196247758|ref|ZP_03146460.1| methyltransferase [Geobacillus sp. G11MC16]
 gi|134266146|gb|ABO66341.1| Methyltransferase [Geobacillus thermodenitrificans NG80-2]
 gi|196212542|gb|EDY07299.1| methyltransferase [Geobacillus sp. G11MC16]
          Length = 202

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 14/91 (15%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQ 271
           L+L+ G+G   +  L+R  +RV+ V+    +V+  R N+AA  +    +I R  +     
Sbjct: 46  LDLFAGSGGLGIEALSRGLERVIFVDHDTKAVQTVRKNVAACGLEKRAEIYRNDAG---- 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
                     LK +     RF  IF+DPP  
Sbjct: 102 --------RALKAVAKRGLRFSVIFLDPPYK 124


>gi|10179847|gb|AAG13912.1|AF263245_8 daunosaminyl-N,N-dimethyltransferase [Micromonospora megalomicea
           subsp. nigra]
          Length = 257

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V          LL++ CG G+  + LA  F  V+ V+++   +  A  N     ++    
Sbjct: 43  VARKHTPQAATLLDVACGTGSHLVELADSFREVVGVDLSAAMLATAARNDPGRELH---- 98

Query: 262 VRMSSKEFT 270
            +   ++F+
Sbjct: 99  -QGDMRDFS 106


>gi|34540196|ref|NP_904675.1| hypothetical protein PG0364 [Porphyromonas gingivalis W83]
 gi|34396508|gb|AAQ65574.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
          Length = 401

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAAN--HVN 257
             L         +L ++C +G FSL   R    +V +V+ +  +V     N+A N    +
Sbjct: 219 RALLEEYASGRKVLNMFCYSGGFSLYAMRGGAYKVHSVDSSARAVHLLEKNMALNFAGDD 278

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             +     +  F   M                  +  I +DPP        + 
Sbjct: 279 RHESYAADAFHFLDEM--------------AVGAYDLIVLDPPAFAKHRKVLR 317


>gi|32491193|ref|NP_871447.1| 3-demethylubiquinone-9 3-methyltransferase [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166400|dbj|BAC24590.1| ubiG [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 226

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L++ CG G  S  L++    V  ++ +K  +  A+Y+   N +  V  +   +K   
Sbjct: 45  KKILDIGCGAGILSEGLSKEGGMVTGIDTSKKMIHHAKYHAKKNKIK-VSYIHEDAKTHL 103

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           +  ++  +     ++  H    K I         D  
Sbjct: 104 KKYKKFYDIITCMEVLEHVEYPKDIINSCSHLIKDKG 140


>gi|322373125|ref|ZP_08047661.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus sp. C150]
 gi|321278167|gb|EFX55236.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus sp. C150]
          Length = 277

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+   R  V  R LI R                ++E +LA     
Sbjct: 61  QLKAHKPAQYILGFEDFHGLRFQVDKRVLIPRPE-----------TEELVELILAENPKT 109

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           +  +L++  G+G  ++ L       +V A +++  ++E AR N   N V+ +  ++    
Sbjct: 110 ELKVLDIGTGSGAIAVSLKESCPLWQVTASDLSVDALELARENAKLNRVD-ISFIQSDVF 168

Query: 268 E 268
           E
Sbjct: 169 E 169


>gi|311896978|dbj|BAJ29386.1| hypothetical protein KSE_35810 [Kitasatospora setae KM-6054]
          Length = 516

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 17/89 (19%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           ++L+L  G+G  +L  ARH  RV A ++   ++   R   A +    V+    S  E   
Sbjct: 180 EVLDLGSGSGVQALHAARHAQRVTATDLNPRALHFTRLTAALSGFERVETAEGSLYE--- 236

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                          +   RF  I  +PP
Sbjct: 237 --------------PVGDRRFDLIVSNPP 251


>gi|310825775|ref|YP_003958132.1| Predicted O-methyltransferase [Eubacterium limosum KIST612]
 gi|308737509|gb|ADO35169.1| Predicted O-methyltransferase [Eubacterium limosum KIST612]
          Length = 263

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYN 250
           GI+  +L W  +     +  +++L  G G   L+L       ++ A+EI +  VE A  +
Sbjct: 31  GIDAVLLSWFASGAVRKKSRVIDLGTGTGIIPLLLYGRTGAQKIQALEIQENMVEMAGRS 90

Query: 251 IAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           IA N +   ++I+                  R     +    +  +  +PP   +    
Sbjct: 91  IACNGLEEKIEIIHGD--------------IRNPGEQVRPTSYDVVVSNPPYMKVGHGL 135


>gi|326789506|ref|YP_004307327.1| methyltransferase type 11 [Clostridium lentocellum DSM 5427]
 gi|326540270|gb|ADZ82129.1| Methyltransferase type 11 [Clostridium lentocellum DSM 5427]
          Length = 267

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 15/119 (12%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            Q N  I   +              ++ L C  G  SL+LA+    V+ V++   +V  A
Sbjct: 31  YQLNHYIQEEV-------GDLSGKKIIHLQCNTGADSLILAKTAQSVMGVDLVPENVFFA 83

Query: 248 RYNIAANHVNNVKIVRMS--------SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           R      + NNV+ +           S ++      E     L D++I +   + +  D
Sbjct: 84  RKLADELNYNNVEFIESDIMTLASIHSDKYDVVFTSEGVLGWLPDLNIWAQTIRGLLKD 142


>gi|296133941|ref|YP_003641188.1| ribosomal protein L11 methyltransferase [Thermincola sp. JR]
 gi|296032519|gb|ADG83287.1| ribosomal protein L11 methyltransferase [Thermincola potens JR]
          Length = 311

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 169 ERLTVAGRTLIYRQIEN-SF---TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFS 224
           E +  A   +I       +F   T     + +  LE ++         + ++  G+G  +
Sbjct: 134 EEVIPAPGDIIVELDPGMAFGTGTHATTVLCLEFLEDIIREGH----KVYDVGTGSGILA 189

Query: 225 LVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +  A+    V++++I + +V  AR N A N V 
Sbjct: 190 ITGAKLGAEVVSIDIDEVAVRVARENAALNGVA 222


>gi|269794446|ref|YP_003313901.1| methyltransferase [Sanguibacter keddieii DSM 10542]
 gi|269096631|gb|ACZ21067.1| putative methyltransferase [Sanguibacter keddieii DSM 10542]
          Length = 203

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+L  G+G   L   +R    V+ VE  K + +  + N+A   ++ V++V   ++ F
Sbjct: 45  ARVLDLCAGSGALGLEAASRGASAVVLVEAGKVAAQVCQQNVATLGLSGVRVVADRAERF 104

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                 +                  +F+DPP
Sbjct: 105 VAQPPAQPW--------------DLVFLDPP 121


>gi|253575649|ref|ZP_04852985.1| SAM binding domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251844987|gb|EES72999.1| SAM binding domain-containing protein [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 254

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
             M+ W+          +L+L CG G  SL LA    +V  V++++  +  AR 
Sbjct: 40  QRMIRWL---HLPPGAKVLDLCCGMGRHSLALAEAGYKVTGVDLSEVLLREARR 90


>gi|225620336|ref|YP_002721593.1| putative SAM-dependent methyltransferase [Brachyspira
           hyodysenteriae WA1]
 gi|225215155|gb|ACN83889.1| putative SAM-dependant methyltransferase [Brachyspira
           hyodysenteriae WA1]
          Length = 290

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 56/146 (38%), Gaps = 27/146 (18%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E   ++ K  +   L L+   G  ++  A    D V+ V+ +K  V  A+ NI  N++ N
Sbjct: 110 EKKSSSHKNKEIKALNLFAYTGGATVACAYADCDEVVHVDASKKIVGHAQKNIEINNLQN 169

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD------------- 305
            K VR   ++  + + RE    R         ++  I +DPP  G               
Sbjct: 170 KK-VRFIIEDVIKFVLREIRRER---------KYDVIIMDPPVYGRGPNGELWQIETSLK 219

Query: 306 ---DATVGMVQAYPHILYISCNPDSL 328
              +  + ++   P +  I+C   S 
Sbjct: 220 RLVEECIKLLSDEPILFLINCYTASF 245


>gi|242091848|ref|XP_002436414.1| hypothetical protein SORBIDRAFT_10g002100 [Sorghum bicolor]
 gi|33321009|gb|AAQ06256.1| putative magnesium-protoporphyrin IX methyltransferase [Sorghum
           bicolor]
 gi|241914637|gb|EER87781.1| hypothetical protein SORBIDRAFT_10g002100 [Sorghum bicolor]
          Length = 330

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 10/119 (8%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEF 269
            + +  CG G+ ++ LA     VLA +I+   V  A+   +            RM   E 
Sbjct: 154 TVCDAGCGTGSLAIPLAAEGADVLASDISAAMVSEAQRQASLAQATAPGSTTFRMPRFEV 213

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328
                 E  ++ +  +D        + +  PR         +       L IS  P +L
Sbjct: 214 RDLESLEGRYDVVVCLD--------VLIHYPREEAKAMIRHLASLADKRLLISFAPRTL 264


>gi|15678751|ref|NP_275867.1| methyltransferase related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|3183225|sp|O26820|TMG10_METTH RecName: Full=N(2),N(2)-dimethylguanosine tRNA methyltransferase
           Trm-G10; AltName: Full=tRNA:G10 dimethyltransferase
 gi|2621813|gb|AAB85229.1| methyltransferase related protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 336

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+ +CG G   +       RV+  +I    VE  R N+    + + +++R  +++ 
Sbjct: 189 DRILDPFCGTGGILIEAGLMGVRVVGADIDWRMVEGTRENLQHYGITDFEVIRSDARDL 247


>gi|119776601|ref|YP_929341.1| hypothetical protein Sama_3469 [Shewanella amazonensis SB2B]
 gi|119769101|gb|ABM01672.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 209

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 18/127 (14%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+ A        +L+ + G+G  +L  L+R+       E+ + +    + N+ 
Sbjct: 52  VRETLFNWIAADLP--HARVLDCFGGSGALALEALSRYASFAKVFELQRDAANQLKINLQ 109

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
               +  ++V   +     A   E               F  +F+DPP R GL +AT+  
Sbjct: 110 TLKCDCAEVVNGDTLALLAAGTAE--------------GFDIVFIDPPFRKGLAEATLLA 155

Query: 312 VQAYPHI 318
           ++ +  +
Sbjct: 156 LKDHGWL 162


>gi|307352499|ref|YP_003893550.1| ribosomal L11 methyltransferase [Methanoplanus petrolearius DSM
           11571]
 gi|307155732|gb|ADN35112.1| ribosomal L11 methyltransferase [Methanoplanus petrolearius DSM
           11571]
          Length = 199

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEA 246
                 +   +L             +L+L CG G F+   A    ++V   +I   +V A
Sbjct: 26  YMTPPVVAARLLYHAYMKGDIEGRSVLDLGCGTGIFACGAALLGAEQVTGADIDPAAVAA 85

Query: 247 ARYNIAANHVNNVKIVRMSSKEF 269
           A  N     V     V     +F
Sbjct: 86  AYRNAERAGVT-ADFVVSDIPDF 107


>gi|297243817|ref|ZP_06927747.1| methylase of polypeptide chain release factors [Gardnerella
           vaginalis AMD]
 gi|296888238|gb|EFH26980.1| methylase of polypeptide chain release factors [Gardnerella
           vaginalis AMD]
          Length = 332

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHV 256
           L+W+  +    +  +++L  G+G   L +A      +V AVE +  + +  R N      
Sbjct: 110 LDWLRESHI-SKPTVVDLCAGSGAIGLSIATEVADAQVWAVEKSPEAFQYLRKNFEE-TA 167

Query: 257 NNVKIVRMSSK--EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N + +++SS+         +    +   ++     +   +  +PP
Sbjct: 168 KNYENMQISSRYHAVLADATKAHISDLTPELHAICGKVDLVITNPP 213


>gi|295398500|ref|ZP_06808534.1| SAM binding domain protein,PUA domain-containing protein
           [Aerococcus viridans ATCC 11563]
 gi|294973223|gb|EFG49016.1| SAM binding domain protein,PUA domain-containing protein
           [Aerococcus viridans ATCC 11563]
          Length = 406

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 16/180 (8%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY--RQI 183
           ++ +A       L+  +   ++ +   G A ++++      + E LT+    + Y  R  
Sbjct: 148 IILEALNNVFPELKGIVGKNRFNLDGTGSAKQSEVLAGD--IPETLTIQENGVNYIVRLD 205

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKP 242
           +         ++   +   +         LL L+   G FS+  A       ++V++AK 
Sbjct: 206 DG--WMTGIFLDQRNVRNYIQTEIAPGKSLLNLFSYTGAFSVAAALGGAAETMSVDVAKR 263

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           S++  +    AN +      ++   +          FN L     H  RF  + +DPP  
Sbjct: 264 SLQLTQEQFEANGLEIGDQHKVRVMDV---------FNYLDYAKTHDLRFDIVVLDPPSF 314


>gi|258588219|pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
          Length = 336

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +++++ G G FS+   ++  ++ A++I   ++E    NI  N + +
Sbjct: 199 VVDMFAGVGPFSIAC-KNAKKIYAIDINPHAIELLXKNIKLNKLEH 243


>gi|251789902|ref|YP_003004623.1| putative metallothionein SmtA [Dickeya zeae Ech1591]
 gi|247538523|gb|ACT07144.1| Methyltransferase type 11 [Dickeya zeae Ech1591]
          Length = 278

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           LE +L         +L+   G G  S  LA    +VL  +++   +  AR         +
Sbjct: 39  LETLLTRLPPRPLRILDAGGGEGPMSRRLAALGHQVLLCDLSDEMIARAREAACEQGVAD 98

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ VR ++++  + + +  + 
Sbjct: 99  NMQFVRCAAQDIGEHLSQPVDL 120


>gi|257389243|ref|YP_003179016.1| methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
 gi|257171550|gb|ACV49309.1| Methyltransferase type 11 [Halomicrobium mukohataei DSM 12286]
          Length = 234

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           E VL A   +    +LE+ CG G F+ +LA     ++ ++I+ P +   R    +  V +
Sbjct: 34  EAVLDAIGPVDDKSVLEVACGTGRFTAMLADRGADIVGLDISGPMLSQGREKAKSAGVDD 93

Query: 258 NVKIVRMSSKEF 269
           +++ +R  +   
Sbjct: 94  HLEFMRGDAARL 105


>gi|226222880|ref|YP_002756987.1| hypothetical protein Lm4b_00272 [Listeria monocytogenes Clip81459]
 gi|225875342|emb|CAS04039.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
          Length = 201

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 44/112 (39%), Gaps = 30/112 (26%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  +
Sbjct: 61  GKILDVGCGYGPMGLTVAKVFPDSQIEMVDVNLRALELAKENAEINKITNTHIYESSVYD 120

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
                             + +  ++ I  +PP           ++A   I++
Sbjct: 121 -----------------SVTANDYQAIISNPP-----------IRAGKRIVH 144


>gi|254381772|ref|ZP_04997136.1| methyltransferase [Streptomyces sp. Mg1]
 gi|194340681|gb|EDX21647.1| methyltransferase [Streptomyces sp. Mg1]
          Length = 218

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 18/106 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              + E +     G + D+LE+  G G  +L  A    RV AV++A P+V  AR N    
Sbjct: 18  TRLLAEALTREDFGSRRDVLEIGTGTGALALHAAGRGARVTAVDVAWPAVVTARLNA--- 74

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +     +R+   +F                     R+  +  +PP
Sbjct: 75  -LRQRVPLRVLHGDFAAR--------------TEGRRYDLVVANPP 105


>gi|159123330|gb|EDP48450.1| ubiE/COQ5 methyltransferase, putative [Aspergillus fumigatus A1163]
          Length = 276

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R   NS          ++L  +          +L++ CG G  ++ LAR      
Sbjct: 19  RSHTWRTAANS--------AAYLLPHLRPDMH-----ILDVGCGPGTITVDLARLIPQGH 65

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  VE++   +E AR   A   + NV  +   +   
Sbjct: 66  ITGVELSPSVLEQARALAADQALTNVTFLSADANAL 101


>gi|120611934|ref|YP_971612.1| 3-demethylubiquinone-9 3-methyltransferase [Acidovorax citrulli
           AAC00-1]
 gi|166234756|sp|A1TSA0|UBIG_ACIAC RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|120590398|gb|ABM33838.1| 3-demethylubiquinone-9 3-methyltransferase [Acidovorax citrulli
           AAC00-1]
          Length = 238

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 41/110 (37%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L W+          +L++ CG G  +  +AR    V  +++A  S++ A+ + 
Sbjct: 34  HEINPLRLGWIDGLAPLQGRRVLDVGCGGGILADAMARKGATVTGIDLATKSLKVAQLHA 93

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
                 +++   +S +   +      +     ++  H     ++     R
Sbjct: 94  LEAGTPDIQYREVSVEALAEESPASFDTVTCMEMLEHVPDPASVVQACAR 143


>gi|27753584|dbj|BAC55218.1| methyltransferase [Streptomyces sp. TP-A0274]
          Length = 280

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 12/112 (10%)

Query: 210 QGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSK 267
              +L+L CG G   L  +AR   RV  + I++  +  A    A     +        + 
Sbjct: 69  TSHVLDLGCGVGGPGLRVVARTGARVTGISISEEQIRTANRLAAEAGVADRAVFQHGDAM 128

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +   A         L+          +I   P R  +      +++    I+
Sbjct: 129 KLPFADASFDAVMALE----------SICHMPDRQQVFTEVSRVLRPGGRIV 170


>gi|332344114|gb|AEE57448.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific PrmB [Escherichia coli UMNK88]
          Length = 310

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNKF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 126 ----------AGLISRQPQHILDMCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEQN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  ++NV  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHNVIPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|328949142|ref|YP_004366479.1| hypothetical protein Tresu_2319 [Treponema succinifaciens DSM 2489]
 gi|328449466|gb|AEB15182.1| hypothetical protein Tresu_2319 [Treponema succinifaciens DSM 2489]
          Length = 245

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
               L   L          L ++CG+G F   L++    V  +E     +  A      N
Sbjct: 20  AQKKLYTELCENFSSPVRFLRVFCGSGLFESSLSKQGHDVTGIENCDELLHTANLR-RRN 78

Query: 255 HVNNVKIVRMSSKEFTQAMRR 275
            + +++  +M +++ T+ + +
Sbjct: 79  QLMSIRFFQMEAEDMTKFLGK 99


>gi|327314563|ref|YP_004330000.1| 50S ribosomal protein L11 methyltransferase [Prevotella denticola
           F0289]
 gi|326944350|gb|AEA20235.1| ribosomal protein L11 methyltransferase [Prevotella denticola
           F0289]
          Length = 288

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
              M+  +L   +      L+  CG G  S+V AR      +  +I + SV  AR+N   
Sbjct: 137 TTQMIVSLLLDQELKGKRTLDCGCGTGILSIVAARCGAREAVCYDIDEWSVRNARHNAEL 196

Query: 254 NHVN 257
           N V 
Sbjct: 197 NGVE 200


>gi|320161033|ref|YP_004174257.1| hypothetical protein ANT_16310 [Anaerolinea thermophila UNI-1]
 gi|319994886|dbj|BAJ63657.1| hypothetical protein ANT_16310 [Anaerolinea thermophila UNI-1]
          Length = 312

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 31/186 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYR-QIENS---- 186
                R   A+HAR          +  KI      + ER  +  + L +  Q+  S    
Sbjct: 57  PALPEREWKAIHARYIPAPEENGGHWEKI----KPIPERWQIHYKDLRFWLQMGGSKHLG 112

Query: 187 -FTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            F        V   +W+    K       +L L+   G  +L  A     V  V+ ++ +
Sbjct: 113 VF----PEQAVQW-DWIQEQIKAFAKPVRVLNLFGYTGLSTLAAASIGASVTHVDASRKA 167

Query: 244 VEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           +  AR N   + + N  V+ +   + +F Q   R                ++ + +DPP+
Sbjct: 168 ITWARENQILSGLENKPVRWLIDDALKFVQREAR------------RGVTYEGMILDPPK 215

Query: 302 SGLDDA 307
            G    
Sbjct: 216 FGRGPK 221


>gi|315048677|ref|XP_003173713.1| hypothetical protein MGYG_03886 [Arthroderma gypseum CBS 118893]
 gi|311341680|gb|EFR00883.1| hypothetical protein MGYG_03886 [Arthroderma gypseum CBS 118893]
          Length = 278

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +     M E V        G  +L+   G+   ++ +AR    V A++I    VE A+ N
Sbjct: 53  SAAQRRMEEKVYNKLGLKPGARVLDAGAGSAYVAMYMARKGLIVDAIDITPFHVEDAKQN 112

Query: 251 IAANHVNNVKIVRMS 265
           + A+ + +   V   
Sbjct: 113 VKAHGLQDKVTVSFD 127


>gi|229033961|ref|ZP_04188915.1| Protein hemK [Bacillus cereus AH1271]
 gi|228728387|gb|EEL79409.1| Protein hemK [Bacillus cereus AH1271]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFHKTGQKLDVVVSNPP 190


>gi|226357112|ref|YP_002786852.1| menaquinone biosynthesis methyltransferase [Deinococcus deserti
           VCD115]
 gi|226319102|gb|ACO47098.1| putative menaquinone biosynthesis methyltransferase [Deinococcus
           deserti VCD115]
          Length = 255

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAAR 248
           A +  H+    + A       +L++  G G  +L LA       +V+  ++A   VE AR
Sbjct: 16  AQVARHV---AVQARVEPADKVLDVASGTGTVALELAARVGPSGQVVGTDLAPQMVEQAR 72

Query: 249 YNIAANHVNNVKIVRMSSKEF 269
               A     ++     +   
Sbjct: 73  --ARAEGTAGLRFELADATAL 91


>gi|170060758|ref|XP_001865942.1| ybiN [Culex quinquefasciatus]
 gi|167879123|gb|EDS42506.1| ybiN [Culex quinquefasciatus]
          Length = 456

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 22/159 (13%)

Query: 158 TKICLDRDYVDERLTVAGR---TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DL 213
           T++ L RD+  E    AG+   TL  R         N  + +  +E  L   +       
Sbjct: 55  TRVLLRRDFGLEVELPAGKLVPTLPLRL--------NYILWLEDVEEALGWRRNRAELRG 106

Query: 214 LELYCGNGNFSLVL--ARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           L++ CG      +L  AR+  R   + +E  + SVE+AR N+  N +          +  
Sbjct: 107 LDIGCGASCIYPLLGVARNRTRWKMVGLEKVRDSVESARGNVERNGLT------GDVRVV 160

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            Q    E       + D    RF     +PP    D   
Sbjct: 161 EQKEGEETVIRGFLEGDGVGERFDFCMCNPPFYEQDHEV 199


>gi|162450972|ref|YP_001613339.1| putative SAM-dependent methyltransferase [Sorangium cellulosum 'So
           ce 56']
 gi|161161554|emb|CAN92859.1| putative SAM-dependent methyltransferase [Sorangium cellulosum 'So
           ce 56']
          Length = 277

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 10/127 (7%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANH 255
           E ++A     +G+ +L+L CG G  +  LA       RVL ++  +  +  AR       
Sbjct: 41  ERLIAFAGVRRGELVLDLGCGTGGLTRRLAELVGPDGRVLGIDPDEARIALARRTA---G 97

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA---TVGMV 312
             N++    +++      R         +   H  R K   +   R  L  A    V  V
Sbjct: 98  APNLEFQVAAAETLGDVARDRPFDLVFSNFVFHWIRDKRAVLRRMRDLLRPAGRILVQCV 157

Query: 313 QAYPHIL 319
            + P ++
Sbjct: 158 SSLPALV 164


>gi|145297996|ref|YP_001140837.1| ribosomal protein L11 methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|166223393|sp|A4SJL7|PRMA_AERS4 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|142850768|gb|ABO89089.1| ribosomal protein L11 methyltransferase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 292

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W+       +  +++  CG+G   +  L     RV+ ++I   +++A+  N   N V 
Sbjct: 147 LQWLDGLDLAGK-TVVDFGCGSGILGIAALKLGAARVIGIDIDPQAIQASHDNAERNGVA 205

Query: 258 N 258
            
Sbjct: 206 G 206


>gi|159043649|ref|YP_001532443.1| ribosomal L11 methyltransferase [Dinoroseobacter shibae DFL 12]
 gi|157911409|gb|ABV92842.1| ribosomal L11 methyltransferase [Dinoroseobacter shibae DFL 12]
          Length = 289

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-- 258
            L +    QG +L++ CG    ++  AR FD  V+A +I   +V+ A  N+AAN +    
Sbjct: 141 ALLSAGQAQGPVLDVGCGTAVLAMAAARVFDTTVVASDIDPVAVDVAEANLAANGMAGQV 200

Query: 259 --VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             V+   +   E   A      F  +    +            P
Sbjct: 201 ICVEATGLDHPEIAGAGPFGVIFANILKGPLIDLAPAITAALAP 244


>gi|186477379|ref|YP_001858849.1| ribosomal protein L11 methyltransferase [Burkholderia phymatum
           STM815]
 gi|226710060|sp|B2JH19|PRMA_BURP8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|184193838|gb|ACC71803.1| ribosomal protein L11 methyltransferase [Burkholderia phymatum
           STM815]
          Length = 300

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW L  +      +L+  CG+G  ++ LA+      V  ++I   +VE+AR+N   N  
Sbjct: 156 MEW-LEQSVQKDQSVLDYGCGSGILAI-LAKKCGANPVFGIDIDPQAVESARHNSERNRA 213

Query: 257 N 257
            
Sbjct: 214 E 214


>gi|167647339|ref|YP_001685002.1| methyltransferase small [Caulobacter sp. K31]
 gi|167349769|gb|ABZ72504.1| methyltransferase small [Caulobacter sp. K31]
          Length = 245

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 212 DLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
            ++E  CG G   L  A  R   R + +E    + + AR NIA N + + V++V    + 
Sbjct: 42  RVIEAGCGVGGALLAAASRRKGARFVGLERDPAAADLARGNIALNGLADRVEVVTGDIER 101

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +A+                  F  +  +PP
Sbjct: 102 GFRALDLP--------------VFDAVISNPP 119


>gi|11497821|ref|NP_069043.1| hypothetical protein AF0205 [Archaeoglobus fulgidus DSM 4304]
 gi|2650438|gb|AAB91027.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 54/171 (31%), Gaps = 36/171 (21%)

Query: 188 TQPNAGINVHML------EWVLAATKGIQGDL---LELYCGNGNFSLVLARHFDRVLAVE 238
            Q N  I +            +A T  + GDL   ++L CG G  ++  +      + V+
Sbjct: 16  FQ-NPKIELEQYVTPPSLAAFIATTAELNGDLDLIIDLGCGTGILAIACSLLGHYSVGVD 74

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           +   +++ AR N A   V     VR    +F                     R  T  ++
Sbjct: 75  LDVEALKIARDNAAELGVE-ADFVRSEVSKFRCK------------------RKVTTVMN 115

Query: 299 PP----RSGLDDATVGMVQAYPHILYI--SCNPDSLCRDLSILSTTHTIER 343
           PP    R   D   +        ++Y   S    +  R LS       +  
Sbjct: 116 PPFGIQRKHADRPFLLKAFEISKVIYTVHSAGSSNFVRKLSE-EHGFKVTY 165


>gi|89097666|ref|ZP_01170554.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           sp. NRRL B-14911]
 gi|89087525|gb|EAR66638.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
           sp. NRRL B-14911]
          Length = 284

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G +G +++L CG G  ++ LA     V  V+I K  +  A        +   K +    +
Sbjct: 70  GKRGPVIDLACGTGRLAIPLAEKGFEVTGVDIHKGMLGRAAEKAKGLPI---KWICGDVR 126

Query: 268 EFTQAMR 274
                ++
Sbjct: 127 SVDLDLK 133


>gi|327399468|ref|YP_004340337.1| hypothetical protein Hipma_1321 [Hippea maritima DSM 10411]
 gi|327182097|gb|AEA34278.1| protein of unknown function Met10 [Hippea maritima DSM 10411]
          Length = 380

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L  +      +L+L+  +G F + L   F +   VEI+  +      N + N + N KI+
Sbjct: 205 LRVSHYKAERVLDLFAHSGGFGIYLNPEFAKF--VEISADACSKIETNCSLNGIKNYKII 262

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT---VGMVQAYPHIL 319
                +F   ++ E E   +  ID  ++      V     GL       + +++   H+ 
Sbjct: 263 NGDVFDF---LKNETETYDMIIIDPPAFAKNKHAVKGAFKGLKYLLTNSLNLLEENGHLA 319

Query: 320 YISC 323
             SC
Sbjct: 320 VFSC 323


>gi|327399183|ref|YP_004340052.1| methyltransferase [Hippea maritima DSM 10411]
 gi|327181812|gb|AEA33993.1| methyltransferase [Hippea maritima DSM 10411]
          Length = 177

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           L+L+ G+G+  +  L+R   RV+ V+ +  SV   R N   N+ +NV +++  +++F  
Sbjct: 46  LDLFAGSGSVGMEALSRGAKRVVFVDSSNDSVSLIRKN--TNNFDNVDVIKSDAEKFLD 102


>gi|303256803|ref|ZP_07342817.1| SmtA protein [Burkholderiales bacterium 1_1_47]
 gi|302860294|gb|EFL83371.1| SmtA protein [Burkholderiales bacterium 1_1_47]
          Length = 235

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG G FSL+LA     V A + ++  +E A+  +  N  ++V+  R  ++    
Sbjct: 46  KVLDIGCGPGFFSLLLASLGMNVTAADYSEGMLEKAKDLLNRNGYHDVEFCRADAQHLPF 105

Query: 272 A 272
           A
Sbjct: 106 A 106


>gi|293409298|ref|ZP_06652874.1| metallothionein SmtA [Escherichia coli B354]
 gi|291469766|gb|EFF12250.1| metallothionein SmtA [Escherichia coli B354]
          Length = 265

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+       V +
Sbjct: 38  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEVKGVSD 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 98  NMQFIHCAAQDVASHLETPVDL 119


>gi|226228554|ref|YP_002762660.1| hypothetical protein GAU_3148 [Gemmatimonas aurantiaca T-27]
 gi|226091745|dbj|BAH40190.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 192

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 8/135 (5%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI 251
            + V M++ V A  +G    +++L+ G G   L  L+R    V  VE    S+ A + NI
Sbjct: 27  AVRVEMMKLVRADLEG--ARVIDLFAGTGAIGLEALSRGAKYVDFVEFRPSSLHALKANI 84

Query: 252 AANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK----TIFVDPPRSGLDD 306
           AA  V    ++ +  +  F  A+   R      D    S             P    L  
Sbjct: 85  AALRVTTKARVYKKDALPFANALIAGRYDLAFVDPPYESRMLDRLIERWLEAPWSPILVA 144

Query: 307 ATVGMVQAYPHILYI 321
                 +    + Y+
Sbjct: 145 EHASTHKLPRTVRYV 159


>gi|197251846|ref|YP_002145909.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197215549|gb|ACH52946.1| SmtA protein [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
          Length = 267

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           LE VL    G +  +L+   G G  ++ +A    +V   +++   +  AR    A  V  
Sbjct: 34  LERVLEEIGGRKLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSK 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++  +++    +    + 
Sbjct: 94  DMHFIQCPAQDVASHLESPVDL 115


>gi|258611913|ref|ZP_05243061.2| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293596357|ref|ZP_05230919.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|293596997|ref|ZP_05266367.2| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|300764912|ref|ZP_07074901.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
 gi|258607093|gb|EEW19701.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293584566|gb|EFF96598.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293595157|gb|EFG02918.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300514399|gb|EFK41457.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
          Length = 250

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
            +G +++L  GNG   L+L+     +++ VEI +   + A+ ++A N + + ++I+    
Sbjct: 47  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 106

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           K+ T  + +ER                 +  +PP     D ++     +  I 
Sbjct: 107 KKITDLIPKERA--------------DIVTCNPPYFATPDTSLKNTNEHFRIA 145


>gi|156407093|ref|XP_001641379.1| predicted protein [Nematostella vectensis]
 gi|156228517|gb|EDO49316.1| predicted protein [Nematostella vectensis]
          Length = 500

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 195 NVHMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARY 249
              +L  +        G+   LLE+ CG G  S++ A +  +  V A ++   +V+    
Sbjct: 55  TTELLRVLAEEMDKKPGEAFALLEIGCGTGLTSIMAALYSKKCQVWATDVNPSAVKNTAE 114

Query: 250 NIAANHVNNVKIVRMSSKEFTQA 272
           N   + V+N   VR ++ +  +A
Sbjct: 115 NAKLHGVDN--QVRTATGDVFKA 135


>gi|119469769|ref|XP_001257977.1| RNA methylase family protein, putative [Neosartorya fischeri NRRL
           181]
 gi|119406129|gb|EAW16080.1| RNA methylase family protein, putative [Neosartorya fischeri NRRL
           181]
          Length = 238

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 16/125 (12%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEI 239
            ++++       +   + E +  A    +  L++ + G G  ++  AR     RV A+E 
Sbjct: 47  TDDAWFGVTPEPVANKIAEDIARAAPAGRSILVDAFAGAGGNTIAFARTGKWKRVYAIEK 106

Query: 240 AKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               ++ A++N     V + +                   F+ LKD       +  IF  
Sbjct: 107 NPAVLQCAKHNAQVYGVADKITWFEGDC------------FSILKDQLKELAPYSVIFAS 154

Query: 299 PPRSG 303
           PP  G
Sbjct: 155 PPWGG 159


>gi|114773221|ref|ZP_01450456.1| 3-demethylubiquinone-9 3-methyltransferase [alpha proteobacterium
           HTCC2255]
 gi|114546340|gb|EAU49249.1| 3-demethylubiquinone-9 3-methyltransferase [alpha proteobacterium
           HTCC2255]
          Length = 277

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 201 WVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +    K +QG  +L++ CG G  S  LAR    V  ++ +  S++ A  +   N +  V
Sbjct: 75  RLYDLGKPLQGLSILDVGCGGGLVSEPLARLGAEVTGIDASAMSIQVATQHAQ-NTLTPV 133

Query: 260 KIVRMSSKEFTQAMRR 275
             V   +++     ++
Sbjct: 134 TYVHTLAEDLVAQQQQ 149


>gi|118475607|ref|YP_892128.1| methyltransferase [Campylobacter fetus subsp. fetus 82-40]
 gi|118414833|gb|ABK83253.1| methyltransferase [Campylobacter fetus subsp. fetus 82-40]
          Length = 261

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +L W        +G  ++++ CG G  ++ LA    +V  ++++   +E    +     +
Sbjct: 29  VLNWCEEIGVRFEGKSIIDIGCGTGTVAIPLASKGAKVCGIDLSPGMLEVLENDAKTLGI 88

Query: 257 N 257
           +
Sbjct: 89  D 89


>gi|21328607|gb|AAM48614.1| magnesium-protoporphyrin O-methyltransferase [uncultured marine
           proteobacterium]
          Length = 234

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +L W+     G +  +L+  CG G  S+ LA+    V+AV++++  +  A  N   + ++
Sbjct: 52  LLSWLPDDLSGKK--VLDAGCGTGVISIELAKRGAHVVAVDLSESLISLA--NQRYSDLD 107

Query: 258 ---NVKIVRMSSKEF 269
               ++ V    ++ 
Sbjct: 108 EYGRIQFVVGDMRQL 122


>gi|16081280|ref|NP_393592.1| N-methyl-transferase related protein [Thermoplasma acidophilum DSM
           1728]
 gi|10639259|emb|CAC11261.1| N-methyl-transferase related protein [Thermoplasma acidophilum]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 15/95 (15%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           L +A    +Y   E+SF              ++       G  +E+ CG G  S+   + 
Sbjct: 6   LDIAECDGVYPPSEDSF--------------LIIEYASCSGKAIEIGCGTGIVSICFLKR 51

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
              + AV+I+  +VE A+ N + N +  +K+ R  
Sbjct: 52  GCDIEAVDISDLAVECAKDNASRNGLT-LKVYRSD 85


>gi|88706648|ref|ZP_01104351.1| magnesium-protoporphyrin O-methyltransferase [Congregibacter
           litoralis KT71]
 gi|88699144|gb|EAQ96260.1| magnesium-protoporphyrin O-methyltransferase [Congregibacter
           litoralis KT71]
          Length = 233

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN-HV 256
           +L W+    +G    +L+  CG G  ++ LA    +VLAV+++   +E AR  + ++   
Sbjct: 52  LLSWLPDNLEGC--RVLDAGCGTGAVAVELATRGAQVLAVDLSATLIEIARERLPSDIGK 109

Query: 257 NNVKIVRMSSKEFTQA 272
            ++             
Sbjct: 110 GHIDFEVGDMAALATG 125


>gi|70986829|ref|XP_748902.1| ubiE/COQ5 methyltransferase [Aspergillus fumigatus Af293]
 gi|66846532|gb|EAL86864.1| ubiE/COQ5 methyltransferase, putative [Aspergillus fumigatus Af293]
          Length = 276

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R   NS          ++L  +          +L++ CG G  ++ LAR      
Sbjct: 19  RSHTWRTAANS--------AAYLLPHLRPDMH-----ILDVGCGPGTITVDLARLIPQGH 65

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  VE++   +E AR   A   + NV  +   +   
Sbjct: 66  ITGVELSPSVLEQARALAADQALTNVTFLSADANAL 101


>gi|332993507|gb|AEF03562.1| putative methyltransferase [Alteromonas sp. SN2]
          Length = 397

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 18/142 (12%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           D+L  +   G FS   L      V  V++++P+++ A+ ++A N ++          E  
Sbjct: 222 DVLNCFSYTGTFSCYALQGGAKSVTNVDVSQPALDLAKQHVALNGLD----------ETK 271

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI-LYISCNPDSL 328
               ++  F +L++      +F  + +DPP+   + A++    + Y  I LY        
Sbjct: 272 SHYVKKDVFKQLREYHERKEQFDMVILDPPKFIDNKASLTRAARGYKDINLYG----IHA 327

Query: 329 CRDLSILSTTHTIERLALFDQF 350
            R+  +L  T +   L   D F
Sbjct: 328 VRNGGLL-LTFSCSGLMPADLF 348


>gi|332559213|ref|ZP_08413535.1| methyltransferase small [Rhodobacter sphaeroides WS8N]
 gi|332276925|gb|EGJ22240.1| methyltransferase small [Rhodobacter sphaeroides WS8N]
          Length = 253

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
             A        +LEL CG G  SL LA      R+  +E+       AR N A N V  +
Sbjct: 36  AAAVPASAGQSVLELGCGAGVASLCLAARVPGLRLAGLELQPAYAALARENAAMNGVA-L 94

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++V         A+R+  + + + +   +     T   DP R 
Sbjct: 95  EVVEGDLSAMPAALRQSFD-HVIANPPYYPAGGGTGAADPGRE 136


>gi|326939812|gb|AEA15708.1| methyltransferase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 237

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E ++         +L+L CG G+ +  L  +   V  ++ +   +E AR N       + 
Sbjct: 33  EKLVLQYAQPHSHILDLCCGTGHLTRKLLDNNFVVTGIDGSTQMIEYARENA-----PDA 87

Query: 260 KIVRMSSKEF 269
                 ++ F
Sbjct: 88  TFFVNDARYF 97


>gi|322804332|emb|CBZ01882.1| predicted O-methyltransferase [Clostridium botulinum H04402 065]
          Length = 246

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 17/104 (16%)

Query: 211 GDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
             +++L  G G  S +LA       ++ +EI K   + A+ +I  N++   V+ +    K
Sbjct: 47  AKVVDLCSGTGIISFILAGKTNASNIIGIEIQKEIADMAKRSIKYNNLQEKVRFIEGDLK 106

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                         LKDI+    +   + V+PP        + +
Sbjct: 107 NL----------KLLKDIE----KVDVVTVNPPYKTQGTGIINI 136


>gi|320040035|gb|EFW21969.1| RNA methylase [Coccidioides posadasii str. Silveira]
          Length = 240

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 8/123 (6%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEI 239
            ++++       I   +   + AA    +  +++ + G G  ++  AR     RV A+E 
Sbjct: 46  TDDAWFGVTPEPIANKIAAHMTAAAPQKKSIVIDTFAGVGGNAIAFARSNKWRRVYAIEK 105

Query: 240 AKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRERE----FNRLKDIDIHSYRFKT 294
              S++ A++N     V + +   +    E  +   ++                 YR   
Sbjct: 106 DPASLQCAKHNAKIYGVEDKITWFQGDCFEILKTQLKDLAPYSVIFASPPWGGPGYRSDK 165

Query: 295 IFV 297
           +F 
Sbjct: 166 VFN 168


>gi|291411837|ref|XP_002722194.1| PREDICTED: CG9643-like [Oryctolagus cuniculus]
          Length = 238

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 13/133 (9%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV 256
           ++ W+      +   +L++  GNG F + LA+  F  +  ++ +  +++ +   +    +
Sbjct: 70  LIRWMQKQKIPLDASVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSERILEKEGL 129

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATVGM 311
           +N+K   +  ++F     +   F     I I    F  I ++P      R     +   +
Sbjct: 130 SNIK---LKVEDFLNLSTKLSGFQ----ICIDKGTFDAISLNPDNAIEKRKQYVKSLSRV 182

Query: 312 VQAYPHILYISCN 324
           ++     L  SCN
Sbjct: 183 LKVKGFFLITSCN 195


>gi|289661719|ref|ZP_06483300.1| hypothetical protein XcampvN_01115 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 224

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 17/132 (12%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            +L   +A        +LEL CG G  SLVL R    V+A +    +     YN A N +
Sbjct: 57  QLLAEAMATRPIEGKRILELGCGLGLASLVLRRRGADVVASDHHPLAEVFLAYNAALNAL 116

Query: 257 NNVKIVRMS---------------SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V   R+                + +     R      +L    +     + +  DP R
Sbjct: 117 ESVPYRRLDWDAGAPNMGQFDMIIASDVLYETRHATMLAKLI-PALAKPSCEIVISDPGR 175

Query: 302 SGLDDATVGMVQ 313
            G  +A   M+ 
Sbjct: 176 -GNANALSRMLA 186


>gi|296140412|ref|YP_003647655.1| methyltransferase type 12 [Tsukamurella paurometabola DSM 20162]
 gi|296028546|gb|ADG79316.1| Methyltransferase type 12 [Tsukamurella paurometabola DSM 20162]
          Length = 204

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 13/106 (12%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              M  +V        G +L++ CG G+ +  L+R    VL VE   PSV    +  A  
Sbjct: 28  QYAMAAFVDRIGADRDGVVLDVGCGIGHVAGDLSRRGLTVLGVE---PSVAMLGH--ARR 82

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              ++  V   +  F  A+  E      +DI     RF  I VDPP
Sbjct: 83  AYPDIAFVEGDA--FLAAVPAE------QDIAAILARFSLIHVDPP 120


>gi|219851150|ref|YP_002465582.1| Methyltransferase type 11 [Methanosphaerula palustris E1-9c]
 gi|219545409|gb|ACL15859.1| Methyltransferase type 11 [Methanosphaerula palustris E1-9c]
          Length = 268

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAAR 248
                 + E +   T+  +G  +LE  CG G  +++LAR+     + +V+I++ S++ A+
Sbjct: 19  TDQAQTLTELLHRDTRYSKGSQVLEAGCGIGAQTVILARNSPDALITSVDISEASLKQAQ 78

Query: 249 YNIAANHVNNVKIVRMS 265
             I    + NV   +  
Sbjct: 79  ETIQHAGITNVTFRQGD 95


>gi|159905015|ref|YP_001548677.1| hypothetical protein MmarC6_0628 [Methanococcus maripaludis C6]
 gi|159886508|gb|ABX01445.1| protein of unknown function Met10 [Methanococcus maripaludis C6]
          Length = 342

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 47/110 (42%), Gaps = 21/110 (19%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++++CG G +S+  A + +++ +++I    +E  + NI  N+  N              
Sbjct: 204 VVDMFCGVGPYSIACA-NAEKIYSIDINPDGIELLKQNIVLNNFEN-------------- 248

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYPHILY 320
               +    L+D+     +   + ++ P+   +  D  + +V+    I Y
Sbjct: 249 ----KIVPILEDVRNVDVKGTRVIMNLPKYAHEFVDKALEIVEDGGIIHY 294


>gi|94264031|ref|ZP_01287831.1| UbiE/COQ5 methyltransferase [delta proteobacterium MLMS-1]
 gi|93455542|gb|EAT05729.1| UbiE/COQ5 methyltransferase [delta proteobacterium MLMS-1]
          Length = 307

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 213 LLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+L  G G F   LA        RV+ V++    +  AR N   +   NV+      + 
Sbjct: 125 VLDLGSG-GGFDCFLAARQVGETGRVIGVDMTPEMISQARANATKSGDRNVEFRLGEIEN 183

Query: 269 FTQA 272
              A
Sbjct: 184 LPVA 187


>gi|170717839|ref|YP_001784899.1| 3-demethylubiquinone-9 3-methyltransferase [Haemophilus somnus
           2336]
 gi|189037622|sp|B0UUV6|UBIG_HAES2 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|168825968|gb|ACA31339.1| ubiquinone biosynthesis O-methyltransferase [Haemophilus somnus
           2336]
          Length = 238

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 179 IYRQIENSFTQPN------AGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHF 231
            + ++  S+  PN        +N   L+++     G+    +L++ CG G  S  +A+  
Sbjct: 11  KFEKMAKSWWDPNGDFKPIHQLNPTRLQYIQQQANGLTEKKVLDVGCGGGILSEAMAKQG 70

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             V  +++    +E AR +     +  +   +++ +EF Q 
Sbjct: 71  AIVTGIDMTVAPLEVARLHAKEQGLV-IDYQQITVEEFLQK 110


>gi|330998941|ref|ZP_08322668.1| methyltransferase domain protein [Parasutterella excrementihominis
           YIT 11859]
 gi|329576155|gb|EGG57674.1| methyltransferase domain protein [Parasutterella excrementihominis
           YIT 11859]
          Length = 235

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L++ CG G FSL+LA     V A + ++  +E A+  +  N  ++V+  R  ++    
Sbjct: 46  KVLDIGCGPGFFSLLLASLGMNVTAADYSEGMLEKAKDLLNRNGYHDVEFCRADAQHLPF 105

Query: 272 A 272
           A
Sbjct: 106 A 106


>gi|315427950|dbj|BAJ49541.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum]
          Length = 640

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                 +L+L CGNG  SL LAR  F  V  ++ ++  +  AR    A H+  V+  R  
Sbjct: 61  FEKDDSILDLCCGNGRHSLELARRGFRNVTGLDYSEELLRIAREKAEAEHLK-VRFTRGD 119

Query: 266 SKEF 269
           ++  
Sbjct: 120 ARSL 123


>gi|302392965|ref|YP_003828785.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acetohalobium arabaticum DSM 5501]
 gi|302205042|gb|ADL13720.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acetohalobium arabaticum DSM 5501]
          Length = 307

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 43/118 (36%), Gaps = 27/118 (22%)

Query: 195 NVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDRV------LAVEIAKPS 243
             H++E V+     +        +++L  G+G   + LA+    V      +  ++++ +
Sbjct: 101 TEHLVEAVIQRVNKLADKREKLTVIDLCTGSGAIIISLAKELADVPLEINYIGTDVSQEA 160

Query: 244 VEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +  A+ N   + V N ++ +                   L  +   + +   I  +PP
Sbjct: 161 LAVAKDNAKLHQVQNQIQFLVGDL---------------LNPVKELNLKPDIIISNPP 203


>gi|240851336|ref|YP_002972739.1| SUN-family protein [Bartonella grahamii as4aup]
 gi|240268459|gb|ACS52047.1| SUN-family protein [Bartonella grahamii as4aup]
          Length = 454

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 15/140 (10%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                      + +L    G  +  LA    +V A+E++   V+  + N+   H + V I
Sbjct: 246 ACLLGTLRGKRVADLCASPGGKTAQLALQGAQVTAIELSANRVKRLKENMERLHFS-VHI 304

Query: 262 VRMSSKEFTQAMRREREF-----------NRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            +   + F      +               R  DI     R   + +   +  L  A + 
Sbjct: 305 WQGDVRNFHPTQLFDAVLLDAPCSSTGTIRRHPDILWTKSRDDIVKLAALQHDLLVAAIS 364

Query: 311 MVQAYPHILYISCNPDSLCR 330
           +V+    I++ +C   SL R
Sbjct: 365 LVKVGGRIVFSNC---SLAR 381


>gi|271969629|ref|YP_003343825.1| SAM-dependent methyltransferase [Streptosporangium roseum DSM
           43021]
 gi|270512804|gb|ACZ91082.1| SAM-dependent methyltransferase, putative [Streptosporangium roseum
           DSM 43021]
          Length = 258

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++L CG G  +  +     RVL ++ +   +E A           +  +    ++FT 
Sbjct: 41  RIVDLGCGTGVLTAEITSRGARVLGIDGSSAMIEKA-----LAQYPGLDFIVGDGRDFTV 95

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVD 298
           A   +  F+    +         +   
Sbjct: 96  AQPYDAVFSN-AALHWMGREPDAVISS 121


>gi|163758076|ref|ZP_02165164.1| methyltransferase, putative [Hoeflea phototrophica DFL-43]
 gi|162284365|gb|EDQ34648.1| methyltransferase, putative [Hoeflea phototrophica DFL-43]
          Length = 207

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                  L  V A  +     +LE+ CG G+ +L LA       A + ++  ++ AR  +
Sbjct: 22  PAAYEKKLAQVSALLQA-TDHVLEIGCGTGSTALRLAPCVAHYTATDGSRSMIDIARSKL 80

Query: 252 AANHVNNVKIVRMSSKEFTQA 272
             +   NV   +  + E  + 
Sbjct: 81  ELDTPTNVTFQQADAVEMVEG 101


>gi|121604036|ref|YP_981365.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Polaromonas naphthalenivorans CJ2]
 gi|120593005|gb|ABM36444.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Polaromonas naphthalenivorans CJ2]
          Length = 229

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +          +LE+  G+G  + +LA    +V+ +EI     E AR N+    + N ++
Sbjct: 74  LQDLAVQKHEKVLEIGTGSGFMAALLAHRAQQVITLEIEPELAETARRNLQKAGIYNAEV 133

Query: 262 VRMS-SKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            +   +    +A+          D+ + S     +
Sbjct: 134 RQADGAANLAEAVSGNGPLRGPFDVIVLSGSVAEV 168


>gi|332527568|ref|ZP_08403615.1| bifunctional 3-demethylubiquinone-9 3-methyltransferase/
           2-octaprenyl-6-hydroxy phenol methylase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111971|gb|EGJ11948.1| bifunctional 3-demethylubiquinone-9 3-methyltransferase/
           2-octaprenyl-6-hydroxy phenol methylase [Rubrivivax
           benzoatilyticus JA2]
          Length = 234

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 65/172 (37%), Gaps = 26/172 (15%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   L+W+ +        +L++ CG G  S  +A     V  ++++  ++  AR + 
Sbjct: 31  HEINPLRLDWIDSLAGLRGKTVLDVGCGGGVLSESMAGRAAHVTGIDLSTKALGVARLHA 90

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             + V N++   ++++    A  R   F+ +  +++  +      V        +A   +
Sbjct: 91  LESEVMNLEYREIATEAL--AAERPGSFDVVTCMEMLEHVPDPASVI-------EACARL 141

Query: 312 VQAYPHILYISCNPDSLCRD-----LSILSTTHTIERLALFDQFPY-TRHME 357
            +    + +      +L R+      +I+   + ++        P  T   E
Sbjct: 142 AKPGGWVFF-----STLNRNPKAFLFAIVGAEYVLK------MLPRGTHEYE 182


>gi|307709017|ref|ZP_07645477.1| hypothetical protein SMSK564_0264 [Streptococcus mitis SK564]
 gi|307620353|gb|EFN99469.1| hypothetical protein SMSK564_0264 [Streptococcus mitis SK564]
          Length = 193

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 20/110 (18%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
                +L++ CG G   L LA+ F  +   V+I   +++ A+ N   N V          
Sbjct: 53  NQGETVLDVGCGYGPLGLSLAKAFGVQATMVDINNRALDLAQQNAERNKVEATIFQSNIY 112

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           ++                      +F  +  +PP          +++   
Sbjct: 113 EQV-------------------EGKFDHVISNPPIRAGKQVVHEIIEKSK 143


>gi|262040980|ref|ZP_06014202.1| metallothionein SmtA [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041674|gb|EEW42723.1| metallothionein SmtA [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 307

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           LE +LA        +L+   G G  ++ +A+    V   +++   V  AR   A    ++
Sbjct: 75  LEPLLAQLGPGPLRVLDAGGGEGQTAIKVAQLGHHVTLCDLSAEMVARARQAAADKGVID 134

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N+  V+ ++++  Q +    + 
Sbjct: 135 NMHFVQCAAQDIAQHLESPVDL 156


>gi|256842045|ref|ZP_05547550.1| ribosomal protein L11 methyltransferase [Parabacteroides sp. D13]
 gi|256736361|gb|EEU49690.1| ribosomal protein L11 methyltransferase [Parabacteroides sp. D13]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 20/204 (9%)

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
                +IN ++   +  I  E    ++   + Y++         L   + LDD   +  +
Sbjct: 13  PIEKEIINDVLAAELGEIGFESFTESEKGLLGYISEA-------LYDKKTLDDKLADFPL 65

Query: 137 RLRDALHARKYQIQLIGRANKTK-----ICLDRDYVDE-RLTVAGRTLIYRQIEN---SF 187
                 +  K+           K     I +  + +       A     Y  I +   +F
Sbjct: 66  ENTRIDYTSKWVESKDWNEEWEKNYFKPIRIGNECIIRASFHEAEPGYTYNIIIDPKMAF 125

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVE 245
              N      M+  +L      + +LL++ CG    ++ LAR     RV A++I + +  
Sbjct: 126 GTGNHETTYLMISEMLKLDLEGK-ELLDMGCGTAVLAI-LARLKGAKRVAAIDIDEWAYN 183

Query: 246 AARYNIAANHVNNVKIVRMSSKEF 269
            A  NI  NH  ++++    +++ 
Sbjct: 184 NALENIRLNHTEDIQVALGGAEKI 207


>gi|190576401|ref|YP_001974246.1| 16S rRNA methyltransferase GidB [Stenotrophomonas maltophilia
           K279a]
 gi|229890174|sp|B2FNF9|RSMG_STRMK RecName: Full=Ribosomal RNA small subunit methyltransferase G;
           AltName: Full=16S rRNA 7-methylguanosine
           methyltransferase; Short=16S rRNA m7G methyltransferase
 gi|190014323|emb|CAQ47970.1| putative glucose inhibited division protein B [Stenotrophomonas
           maltophilia K279a]
          Length = 212

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 19/156 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNI 251
           +  H+L+ +        G L +L  G G   + LA      +V  VE         R  +
Sbjct: 57  VTRHLLDSLAMQPFVADGSLADLGTGPGLPGIPLAIACPGLQVTLVESNGKKARFMREAV 116

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               + N ++    ++   +A R ++   R  D      R     + P         + M
Sbjct: 117 RQLGLGNARVAESRAEALDEAGRYDQLTARAMDTLAGIVRVGGHLLRP-----GGVLLAM 171

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
              YPH             +++ L     +  +   
Sbjct: 172 KGVYPH------------EEIAELPAGWQVREVTPL 195


>gi|158426102|ref|YP_001527394.1| ribosomal protein L11 methyltransferase [Azorhizobium caulinodans
           ORS 571]
 gi|158332991|dbj|BAF90476.1| ribosomal protein L11 methyltransferase [Azorhizobium caulinodans
           ORS 571]
          Length = 331

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHV 256
           +      A  G    +L++  G G  ++  AR F R V+A ++   +V+ AR N   N  
Sbjct: 169 LAAIADMAKLGTPRRILDVGTGTGVLAIAAARQFRRPVVASDLDDVAVKTARENARFNGA 228

Query: 257 NNVKIVRMSSK 267
                + +++ 
Sbjct: 229 GPFVTLHLAAG 239


>gi|150006953|ref|YP_001301696.1| ribosomal protein L11 methyltransferase [Parabacteroides distasonis
           ATCC 8503]
 gi|149935377|gb|ABR42074.1| ribosomal protein L11 methyltransferase [Parabacteroides distasonis
           ATCC 8503]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 20/204 (9%)

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
                +IN ++   +  I  E    ++   + Y++         L   + LDD   +  +
Sbjct: 13  PIEKEIINDVLAAELGEIGFESFTESEKGLLGYISEA-------LYDKKTLDDKLADFPL 65

Query: 137 RLRDALHARKYQIQLIGRANKTK-----ICLDRDYVDE-RLTVAGRTLIYRQIEN---SF 187
                 +  K+           K     I +  + +       A     Y  I +   +F
Sbjct: 66  ENTRIDYTSKWVESKDWNEEWEKNYFKPIRIGNECIIRASFHEAEPGYTYNIIIDPKMAF 125

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVE 245
              N      M+  +L      + +LL++ CG    ++ LAR     RV A++I + +  
Sbjct: 126 GTGNHETTYLMISEMLKLDLEGK-ELLDMGCGTAVLAI-LARLKGAKRVAAIDIDEWAYN 183

Query: 246 AARYNIAANHVNNVKIVRMSSKEF 269
            A  NI  NH  ++++    +++ 
Sbjct: 184 NALENIRLNHTEDIQVALGGAEKI 207


>gi|74316964|ref|YP_314704.1| 3-demethylubiquinone-9 3-methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
 gi|109895925|sp|Q3SK91|UBIG_THIDA RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|74056459|gb|AAZ96899.1| ubiquinone biosynthesis O-methyltransferase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 232

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 1/118 (0%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            NS  +P   IN   L WV          +L++ CG G  +  +A     V  +++++ +
Sbjct: 22  PNSEFKPLHEINPLRLRWVDTRAPLAGKKVLDVGCGGGILAEAMAGVGATVSGIDLSEKA 81

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           ++ AR ++  +   +V    +S++++  A   E +     ++  H     ++     R
Sbjct: 82  LKVARLHLYESG-KSVDYELVSAEDYAAAHPGEFDVVTCMEMLEHVPDPASVVAACAR 138


>gi|85107345|ref|XP_962358.1| hypothetical protein NCU06616 [Neurospora crassa OR74A]
 gi|28923962|gb|EAA33122.1| predicted protein [Neurospora crassa OR74A]
          Length = 317

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY--------NIAANHVNNVKIV 262
           G LL+L CG+G  +  LA +F+RV+A++ +   +E AR                 ++  +
Sbjct: 51  GTLLDLGCGHGLVARALAPYFNRVIALDPSAGMIEQARKLTGDNSKITFKQGGAEDLSFL 110

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
             ++ +   A +    F+  K     +   K
Sbjct: 111 DDNAVDCVVAGQAAHWFDYSKVWPALARVVK 141


>gi|331006966|ref|ZP_08330209.1| Methylase of polypeptide chain release factors [gamma
           proteobacterium IMCC1989]
 gi|330419228|gb|EGG93651.1| Methylase of polypeptide chain release factors [gamma
           proteobacterium IMCC1989]
          Length = 289

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 195 NVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
              M+E  L+     + +    +++L  G G  +L LA  +    ++A + +  + E A+
Sbjct: 103 TEVMVETALSLFVDDEPEKQRSVVDLGTGTGAIALALASEKPCWDIIAADNSVAACELAK 162

Query: 249 YNIAANHVNNVKIVRMS---SKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            N   + ++NV ++      + +             + + D H ++   
Sbjct: 163 KNQQRHQLHNVTVLCSDWLVAVDVADVDLIVSNPPYIHENDPHLFQGDV 211


>gi|283853926|ref|ZP_06371133.1| Methyltransferase type 12 [Desulfovibrio sp. FW1012B]
 gi|283570680|gb|EFC18733.1| Methyltransferase type 12 [Desulfovibrio sp. FW1012B]
          Length = 211

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
                +    + L+  CG G  +L LAR  DRV  ++ +   +      I A  + NV  
Sbjct: 34  AAGLFREPVAEALDFGCGTGLLTLELARRCDRVTGLDTSPGMLAELDAKIEAAGLENVTT 93

Query: 262 VRMSSK 267
           + +  +
Sbjct: 94  LLVDLE 99


>gi|228924064|ref|ZP_04087340.1| Protein hemK [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228835554|gb|EEM80919.1| Protein hemK [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA   +   V  V+IA+ S+E A+ N  A  
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENENLHVYTVDIAQESIEVAKENAKALG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFHKTDQKLDVVVSNPP 190


>gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225794369|gb|ACO34459.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 294

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 16/136 (11%)

Query: 145 RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLA 204
             + ++   +     I  ++++   RL V    LI R               H++E  L 
Sbjct: 72  ESWILRRAAQEPVQYIVGEQEFWGLRLRVTPDVLIPRPE-----------TEHLVEAALE 120

Query: 205 A-TKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
              +G    + ++  G+G  ++ LA  R    V A+++++ ++  AR N AA+ V   + 
Sbjct: 121 RLPEGETVRVADIGTGSGAIAIALAASRPQALVTALDLSEAALRIARENAAAHGV--AER 178

Query: 262 VRMSSKEFTQAMRRER 277
           +R    +   A+R ER
Sbjct: 179 MRFLQSDLLAAVRGER 194


>gi|116747715|ref|YP_844402.1| type 11 methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116696779|gb|ABK15967.1| Methyltransferase type 11 [Syntrophobacter fumaroxidans MPOB]
          Length = 279

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 15/126 (11%)

Query: 212 DLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G F   LA        RV+ V++    +  A+ N       N +      +
Sbjct: 82  TVLDLGSGAG-FDCFLAAAKVGPSGRVIGVDMTPEMIAKAQENALKGGYANTEFRFGEIE 140

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTI-----FVDPPRSGLDDATVGMVQAYPHI---- 318
                            I++   + K        + P    +    V   +    I    
Sbjct: 141 NLPVEDSSVDVIVSNCVINLSPDKPKVFKEAFRVLKPGGRFIVSDIVLTAELPEFIRNSM 200

Query: 319 -LYISC 323
             Y++C
Sbjct: 201 DAYVAC 206


>gi|331001218|ref|ZP_08324844.1| protein-(glutamine-N5) methyltransferase [Parasutterella
           excrementihominis YIT 11859]
 gi|329568945|gb|EGG50741.1| protein-(glutamine-N5) methyltransferase [Parasutterella
           excrementihominis YIT 11859]
          Length = 247

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 26/136 (19%)

Query: 190 PNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAK 241
            N  +         ++EW++         + +L  G+G  +  +A  R    V A ++++
Sbjct: 58  VNPSVLIPRSDTECLVEWLIE-HLPKNALVCDLGTGSGCIAATVALERPDLTVWASDLSE 116

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            ++  A+ N  A   + VK+V+ S                  D       F  +  +PP 
Sbjct: 117 SALAVAQANCKALGAD-VKLVQGS----------------WLDPYPAELSFDAVISNPPY 159

Query: 302 SGLDDATVGMVQAYPH 317
              DD  +  ++  P 
Sbjct: 160 IERDDKHLDALRYEPR 175


>gi|300716130|ref|YP_003740933.1| SAM-dependent methyltransferase [Erwinia billingiae Eb661]
 gi|299061966|emb|CAX59082.1| SAM-dependent methyltransferase [Erwinia billingiae Eb661]
          Length = 396

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +          +L  +   G F++  L     +V++V+ ++ +++ AR N+  N ++  
Sbjct: 212 RMATRRYAKDRRVLNCFSYTGGFAVSALMGDCKQVISVDTSQGALDIARQNVELNGLD-- 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
               +S  EF     R+  F  L+       +F  I +DPP+   +     G  + Y  I
Sbjct: 270 ----LSKAEFL----RDDVFKLLRRYRDSGEKFDLIVMDPPKFVENKNQLAGACRGYKDI 321


>gi|296135886|ref|YP_003643128.1| modification methylase, HemK family [Thiomonas intermedia K12]
 gi|295796008|gb|ADG30798.1| modification methylase, HemK family [Thiomonas intermedia K12]
          Length = 324

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A        ++++ CG+GN +L LA      +V   +I++ +++ AR N    +++  +
Sbjct: 140 MAEATATPPIVIDVCCGSGNLALALAHAVPQAQVHGADISQTAIDLARANTQ--NLDLGQ 197

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            V + + +       E +      + +  Y         P   +   
Sbjct: 198 RVSLHTGDLLAPFGAEFQGKVDLVVSLPPYISTAKMDTMPHEIVGHE 244


>gi|256397124|ref|YP_003118688.1| methyltransferase [Catenulispora acidiphila DSM 44928]
 gi|256363350|gb|ACU76847.1| methyltransferase [Catenulispora acidiphila DSM 44928]
          Length = 202

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 14/115 (12%)

Query: 202 VLAATKGIQG-DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + +   G+ G  +L+L+ G+G   L  L+R  ++VL VE  +   +    NIA   +   
Sbjct: 37  LASEFGGLSGLSVLDLFAGSGALGLEALSRGAEKVLLVEADRRVTKLIAQNIATVDLPGA 96

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           ++V   ++    A    +E             F  + +DPP +  D   V ++ A
Sbjct: 97  RVVADRAERAV-AGEVPKEAP-----------FDLVLLDPPYAVADGEVVTILTA 139


>gi|206560971|ref|YP_002231736.1| putative biotin biosyntehsis related protein [Burkholderia
           cenocepacia J2315]
 gi|198037013|emb|CAR52934.1| putative biotin biosyntehsis related protein [Burkholderia
           cenocepacia J2315]
          Length = 250

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A +      +L+L CG G+ S  +A H   V+A ++A P +           + NV+ 
Sbjct: 34  ADAVSATPDAAVLDLGCGAGHASFAVAPHVRDVVAYDLAAPMLATVDAAARERGLANVRT 93

Query: 262 VRMSSKEF 269
            +  ++  
Sbjct: 94  QQGPAERL 101


>gi|159462686|ref|XP_001689573.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Chlamydomonas reinhardtii]
 gi|158283561|gb|EDP09311.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Chlamydomonas reinhardtii]
          Length = 284

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 137 RLRDALHARKYQIQLIGRANKTKICLDRDYVDERL--TVAGRTLIYRQIENSFTQPNAGI 194
           RL  A+  RK  +         K+ L  D   ER+  +   R   Y    N F   ++ +
Sbjct: 11  RLEAAVSQRKRVVAR-ALGPHQKLLLIPDGFKERVAASFEPRAAAYD-TGNVF---HSQL 65

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNI 251
              +L  +           L++ CG G  +L LAR      RV+ ++++   +  AR   
Sbjct: 66  AESLLSHLTLRMGD---RALDVACGTGMVALPLARAVGRAGRVVGLDLSGGMLAVARAKA 122

Query: 252 AANHV 256
            A  +
Sbjct: 123 EAEGL 127


>gi|118404434|ref|NP_001072706.1| protein arginine N-methyltransferase 2 [Xenopus (Silurana)
           tropicalis]
 gi|115312990|gb|AAI24053.1| HMT1 hnRNP methyltransferase-like 1 [Xenopus (Silurana) tropicalis]
          Length = 332

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 211 GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
             +L+L CG G  S   A+      V AVE ++ + E  R  +  N ++N V ++R  ++
Sbjct: 142 KHILDLGCGTGIISFFCAKLAQPEAVYAVEASEIA-EQTRRLVKQNGISNLVHVIRQRAE 200

Query: 268 EF 269
           E 
Sbjct: 201 EL 202


>gi|114777341|ref|ZP_01452338.1| hemK protein [Mariprofundus ferrooxydans PV-1]
 gi|114552123|gb|EAU54625.1| hemK protein [Mariprofundus ferrooxydans PV-1]
          Length = 279

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 64/188 (34%), Gaps = 25/188 (13%)

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRD---YVDERLTVAGRTLIYRQ 182
           LL   W      L    H           A   +  L R+   Y+        R   +R 
Sbjct: 30  LLMHVWPCSRTDLIIRAHDEPPATVSRHFAALLQRRLAREPLAYITGEKEFWSRP--FRV 87

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDR--VLAVE 238
             +    P      H++E VLA            ++  G+G  ++ LA  +    V A +
Sbjct: 88  SPDVLI-PRPE-TEHLIEAVLARFPDQSAPYQFCDIGTGSGCIAVTLAAEYPHAAVTATD 145

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I++ S+  A+ N AA +V     +   S +  QA++ E               F  +  +
Sbjct: 146 ISEASLRMAQTNAAALNV--ASRLAWRSGDLLQALQPE------------DGPFDVVISN 191

Query: 299 PPRSGLDD 306
           PP    D+
Sbjct: 192 PPYVSSDE 199


>gi|46906401|ref|YP_012790.1| hypothetical protein LMOf2365_0180 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47092852|ref|ZP_00230635.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|46879665|gb|AAT02967.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018756|gb|EAL09506.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
           H7858]
 gi|332310577|gb|EGJ23672.1| hypothetical protein yabB [Listeria monocytogenes str. Scott A]
          Length = 253

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
            +G +++L  GNG   L+L+     +++ VEI +   + A+ ++A N + + ++I+    
Sbjct: 50  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 109

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           K+ T  + +ER                 +  +PP     D ++     +  I 
Sbjct: 110 KKITDLIPKERA--------------DIVTCNPPYFATPDTSLKNTNEHFRIA 148


>gi|332971800|gb|EGK10748.1| protein-(glutamine-N5) methyltransferase [Desmospora sp. 8437]
          Length = 314

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 16/107 (14%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAA 253
             +L       KG     +++  G+G  ++ LA  R    V+AV+ +  +++ AR N A 
Sbjct: 127 ETVLREADGIWKGKAVTAVDMGTGSGAIAVTLAAERPAWEVVAVDRSPAALKVARQNGAK 186

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N   +                R  + + L+ +     R   +  +PP
Sbjct: 187 NGSGDR--------------IRWMQGDWLEPLLKRDLRVDVVVSNPP 219


>gi|325299194|ref|YP_004259111.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacteroides salanitronis DSM 18170]
 gi|324318747|gb|ADY36638.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacteroides salanitronis DSM 18170]
          Length = 280

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 175 GRTLIYRQIENSF----TQPNAGI------NVHMLEWVLAATKGIQG-DLLELYCGNGNF 223
                Y   E SF         G+         +++W+++  +G     ++++  G+G  
Sbjct: 66  FEPFQYITGEASFCGLPFHVAPGVLIPRPETAELVDWIVSDFQGKAEVSIVDIGTGSGCI 125

Query: 224 SLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREF 279
           ++ LAR     RV A +I+  ++  AR N   N V  V   ++       A      F
Sbjct: 126 AVALARFLPGARVSAWDISDAALGIARRNAERNRVR-VDFRQVDVFSHIPAEAHAHIF 182


>gi|322701832|gb|EFY93580.1| tRNA wybutosine-synthesizing protein [Metarhizium acridum CQMa 102]
          Length = 395

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
              +      ++LY G G F+   AR   RVL  E+   SVEA R     N  
Sbjct: 194 DDDQSQDPWAVDLYAGIGYFTFCYARLGFRVLCWELNPWSVEALRRGAHLNKW 246


>gi|297625419|ref|YP_003687182.1| methyltransferase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921184|emb|CBL55733.1| methyltransferase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 240

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA-NHVNNVKIVRMSSK 267
             G  L+L CG G  ++ LA    +    +I++ ++  A+   A  N  +      ++  
Sbjct: 60  TPGRSLDLGCGEGADAIWLATQGWQATGYDISQTAIGRAQQAAAEKNVADTTHFEAVNLD 119

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           E++QA   + +     ++   S+    + +D  R
Sbjct: 120 EWSQAPLPDDQGRGQYNLITASFLQSPVALDRIR 153


>gi|301102297|ref|XP_002900236.1| tRNA (guanine-N(1)-)-methyltransferase, putative [Phytophthora
           infestans T30-4]
 gi|262102388|gb|EEY60440.1| tRNA (guanine-N(1)-)-methyltransferase, putative [Phytophthora
           infestans T30-4]
          Length = 411

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 59/172 (34%), Gaps = 20/172 (11%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANK----------TKICLDRDYVD 168
           V  I H  L D        +   +  +  QI+ +                ++    D ++
Sbjct: 130 VGHIAHLNLRDNQLPFKNVIGQVILDKNAQIRTVVNKTDNIETKFRTFPMEVLAGDDDME 189

Query: 169 ERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV 226
             +  +  +  +   E        N+ +    L   +         + ++ CG G F++ 
Sbjct: 190 VEVHESKASFRFNYAE-----VYWNSRLQQEHLR--IIRQIKPHDVVCDMMCGIGPFAVP 242

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRER 277
           +A +  +V A ++   S    + NIA N V   V    +  ++F   +  E+
Sbjct: 243 VALNGSKVYANDLNPRSYHYLKENIALNKVEKLVTAYNLDGRDFLAKLLSEK 294


>gi|294955906|ref|XP_002788739.1| n6-DNA-methyltransferase, putative [Perkinsus marinus ATCC 50983]
 gi|239904280|gb|EER20535.1| n6-DNA-methyltransferase, putative [Perkinsus marinus ATCC 50983]
          Length = 213

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 22/124 (17%)

Query: 183 IENSFTQPNAGI---NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAV 237
           I   FT+           M++ +L         +L+L  G+G   + LA      RV   
Sbjct: 3   IPRGFTKVCGQAIPETELMVQRILEGGLPGGRRILDLCSGSGVIGIALATAWATMRVDLA 62

Query: 238 EIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           ++++ ++  AR N     V + +K +                   + D +  +  +  + 
Sbjct: 63  DLSEQAMGLARENAKRFGVYDRLKFLVG----------------PISDQEFTANSYDMVV 106

Query: 297 VDPP 300
            +PP
Sbjct: 107 SNPP 110


>gi|237801726|ref|ZP_04590187.1| hypothetical protein POR16_23066 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024585|gb|EGI04641.1| hypothetical protein POR16_23066 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 314

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 212 DLLELYCGNGNFSL--VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             +++ CG G   L   +AR   +V AV+I   ++  A+ N A   + NV+  +  
Sbjct: 137 RAVDIGCGTGAGGLLIAVARPDAQVFAVDINPKALHFAQTNAALAGLENVECCQSD 192


>gi|237746941|ref|ZP_04577421.1| ribosomal protein L11 methyltransferase [Oxalobacter formigenes
           HOxBLS]
 gi|229378292|gb|EEO28383.1| ribosomal protein L11 methyltransferase [Oxalobacter formigenes
           HOxBLS]
          Length = 312

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHV 256
           LEW L         +L+  CG+G  S+  A+      V  V+I   SV  +R N A NH 
Sbjct: 166 LEW-LEKNVKKDLSILDYGCGSGILSIA-AKKLGAKTVTGVDIDPQSVATSRENAARNHC 223

Query: 257 N 257
            
Sbjct: 224 Q 224


>gi|241949783|ref|XP_002417614.1| conserved hypothetical protein [Candida dubliniensis CD36]
 gi|223640952|emb|CAX45279.1| conserved hypothetical protein [Candida dubliniensis CD36]
          Length = 336

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 14/98 (14%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             SF      I    +              ++L CG G  +  L      VL V+++   
Sbjct: 22  PPSFY----KILADYVTKAEPPINLPIDKTIDLGCGTGVATYPLLNISTNVLGVDLSSKM 77

Query: 244 VEAA----RYNIAANHVNN------VKIVRMSSKEFTQ 271
           +E A      N+    +NN      +K +  S +EF +
Sbjct: 78  IETANSLIDKNLQTLGINNSLLTSRIKFITGSVEEFVK 115


>gi|221059443|ref|XP_002260367.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193810440|emb|CAQ41634.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 550

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV- 256
           L   +  +      +L+L+   G+F + LA      V  V+ +  +++        N V 
Sbjct: 250 LNRAMLISYCKNKRVLDLFSYVGSFGITLAYYGAKEVTCVDSSYAAIQHGIKAAHYNGVM 309

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +    V    K+F       +       ID      +   ++   SG   ++  
Sbjct: 310 DKTNFVHSCVKKFLSLCLHAQVGFSSGHIDRADVHSRHHLLEASESGCPKSSCQ 363


>gi|170289835|ref|YP_001736651.1| wybutosine (yW) biosynthesis enzyme [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170173915|gb|ACB06968.1| Wybutosine (yW) biosynthesis enzyme [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 264

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 216 LYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKI-VRMSSKEFTQAM 273
           ++ G G +++ +AR    +++ VEI   +V   + NI  N +++    +         AM
Sbjct: 113 MFAGVGPYAIAIARRKSVQIVGVEINSIAVRYFQENIKINGLSHKIFPIEGDVSYLAPAM 172

Query: 274 RREREFNRLK 283
           R   +   + 
Sbjct: 173 RGRFDRVVMP 182


>gi|119472194|ref|XP_001258291.1| UbiE/COQ5 family methyltransferase, putative [Neosartorya fischeri
           NRRL 181]
 gi|119406443|gb|EAW16394.1| UbiE/COQ5 family methyltransferase, putative [Neosartorya fischeri
           NRRL 181]
          Length = 265

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 15/102 (14%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y+ +  T   +T  +R   NS          ++L             +L++ CG G+ S+
Sbjct: 4   YITDHSTSVLKTHSWRTASNS--------ATYLL-----PHITPTSKILDIGCGPGSISV 50

Query: 226 VLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             AR      V  +E     ++ AR+   +  V N+      
Sbjct: 51  DFARRANQGHVTGIENVPDPLDQARHLATSQGVTNIDFRLGD 92


>gi|88601558|ref|YP_501736.1| ribosomal RNA adenine dimethylase [Methanospirillum hungatei JF-1]
 gi|88187020|gb|ABD40017.1| ribosomal RNA adenine dimethylase [Methanospirillum hungatei JF-1]
          Length = 278

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 195 NVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           N   +E VL       +  +L++  G G  +   A     V A+E +   +E  +  IA 
Sbjct: 44  NPERIEQVLSRLPITHESRILDIGAGPGTLAFPFAERAAHVTAIEPSPGMIEVMKDQIAE 103

Query: 254 NHVNNVKIVRMSSKEFTQA 272
             V+N+ IV    ++   +
Sbjct: 104 LQVHNLTIVPKRWEDVDPS 122


>gi|77464322|ref|YP_353826.1| N-6 adenine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
 gi|77388740|gb|ABA79925.1| N-6 Adenine-specific DNA methylase [Rhodobacter sphaeroides 2.4.1]
          Length = 253

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 4/103 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
             A        +LEL CG G  SL LA      R+  +E+       AR N A N V  +
Sbjct: 36  AAAVPASAGQSVLELGCGAGVASLCLAARVPGLRLAGLELQPAYAALARENAAMNGVA-L 94

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++V         A+R+  + + + +   +     T   DP R 
Sbjct: 95  EVVEGDLSAMPAALRQSFD-HVIANPPYYPAGGGTGAADPGRE 136


>gi|330823808|ref|YP_004387111.1| methyltransferase small [Alicycliphilus denitrificans K601]
 gi|329309180|gb|AEB83595.1| methyltransferase small [Alicycliphilus denitrificans K601]
          Length = 379

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANH 255
             ++ V  A         ++  G G  + VLAR    RV+A E+A  ++  A+ N+    
Sbjct: 187 EYIDLVAQAPLPGTSLAFDIGTGTGVLAAVLARRGVRRVVATELAPRALACAQDNLRRLG 246

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           + +   V + + +     R          +    
Sbjct: 247 LQD--RVELLAADLFPPGRAPLVVCNPPWLPARP 278


>gi|330508056|ref|YP_004384484.1| phosphatidylethanolamine N-methyltransferase [Methanosaeta concilii
           GP-6]
 gi|328928864|gb|AEB68666.1| phosphatidylethanolamine N-methyltransferase, putative
           [Methanosaeta concilii GP-6]
          Length = 256

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 25/127 (19%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
             +L++  G G  +L+LA     V  V+I+   +E AR N  +  +  V       ++ +
Sbjct: 47  KRVLDVGTGPGFMALILAEMGLDVTGVDISSGMIEKARQNAQSMGLQ-VDFRHADGEQLS 105

Query: 271 -------------------QAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDD 306
                                +   RE++R+             + DP      R G+  
Sbjct: 106 FDSESFDLLVNRHLLWTLPHPLAAVREWSRVLKDGGRILAIDGAWFDPSLNAQIRRGISS 165

Query: 307 ATVGMVQ 313
           A   +  
Sbjct: 166 AAAKICS 172


>gi|319776852|ref|YP_004136503.1| DNA methylase [Mycoplasma fermentans M64]
 gi|318037927|gb|ADV34126.1| DNA methylase [Mycoplasma fermentans M64]
          Length = 182

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L+ G+G FS   L+ +  + +AV+    +++A R N       N+ IV+     + Q
Sbjct: 46  ILDLFAGSGAFSFEALSNYAVKAIAVDNNNEAIKAIRNNALKLKAENIDIVKDDVLNYLQ 105

Query: 272 AMRREREFNRLKDIDIHSYR 291
                +      D     Y+
Sbjct: 106 KNSGRKFDFIFIDAPYKEYQ 125


>gi|319763928|ref|YP_004127865.1| methyltransferase small [Alicycliphilus denitrificans BC]
 gi|317118489|gb|ADV00978.1| methyltransferase small [Alicycliphilus denitrificans BC]
          Length = 379

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANH 255
             ++ V  A         ++  G G  + VLAR    RV+A E+A  ++  A+ N+    
Sbjct: 187 EYIDLVAQAPLPGTSLAFDIGTGTGVLAAVLARRGVRRVVATELAPRALACAQDNLRRLG 246

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
           + +   V + + +     R          +    
Sbjct: 247 LQD--RVELLAADLFPPGRAPLVVCNPPWLPARP 278


>gi|218133362|ref|ZP_03462166.1| hypothetical protein BACPEC_01227 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992235|gb|EEC58239.1| hypothetical protein BACPEC_01227 [Bacteroides pectinophilus ATCC
           43243]
          Length = 289

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 25/139 (17%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEI 239
              N+ +         ++   L      +  +L++  G+G   + LA  +   R L  +I
Sbjct: 92  FNVNSDVLVPRQDTEVLVSEALKVINA-KDSVLDMCTGSGCIIITLALEKKLGRALGADI 150

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           ++ +++ A  N      ++V  V   S  F+     + E             F  I  +P
Sbjct: 151 SEAALKVASGNREKLGADDVTFV--KSNIFSDINVNDDEL------------FDVIVSNP 196

Query: 300 PRSGLDDATVGMVQAYPHI 318
           P     +  +  +     I
Sbjct: 197 PYIATGE--IETLTEEVRI 213


>gi|115372059|ref|ZP_01459371.1| methlytransferase, UbiE/COQ5 family [Stigmatella aurantiaca
           DW4/3-1]
 gi|310824652|ref|YP_003957010.1| hypothetical protein STAUR_7427 [Stigmatella aurantiaca DW4/3-1]
 gi|115371024|gb|EAU69947.1| methlytransferase, UbiE/COQ5 family [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397724|gb|ADO75183.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNN 258
           V A   G +  +L++ CG G+ +L +AR      R + ++I++P + AAR      +   
Sbjct: 42  VEAVFAGSESQVLDVGCGTGSTALAVARRLGAKGRCIGIDISEPMITAARARAEREN-TP 100

Query: 259 VKIVRMSS 266
              +R ++
Sbjct: 101 ASFIRANA 108


>gi|77917766|ref|YP_355581.1| methyltransferase [Pelobacter carbinolicus DSM 2380]
 gi|77543849|gb|ABA87411.1| methyltransferase [Pelobacter carbinolicus DSM 2380]
          Length = 269

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 16/125 (12%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
                   +L++ C +G  ++ L+    +V A++I+   ++  +       ++NV  V+ 
Sbjct: 53  MDPEPHWRVLDVGCASGTLAVPLSSRVRQVTALDISPVMLDCLQARCRQRQIDNVHPVQA 112

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS-- 322
           S            +++RL              + P    L  A   + +     + IS  
Sbjct: 113 S---------WADDWHRLGLEPHEVVVASRSLIVPD---LRQAVDKLNRFARRRVCISTP 160

Query: 323 --CNP 325
             C P
Sbjct: 161 VGCGP 165


>gi|53747902|emb|CAF05647.1| TubB protein [Angiococcus disciformis]
          Length = 1541

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 196  VHMLEWVL----AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              M EWV        + +   +LEL CG+G     LA   +     E++  +VE  R  +
Sbjct: 1030 EQMREWVETTVERLMELVPRRVLELGCGSGLLLRRLAPRCESYWGTELSPVAVERLREQL 1089

Query: 252  AANHVNNVKIVRMSS 266
                    + VR+ +
Sbjct: 1090 QTGGSPLAQRVRLMA 1104


>gi|328863984|gb|EGG13083.1| hypothetical protein MELLADRAFT_32431 [Melampsora larici-populina
           98AG31]
          Length = 218

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           +++ +CG G  ++  A   DRV+A++I    +  A +N     V + ++ +     E+ Q
Sbjct: 42  IVDAFCGAGGNAIQFASTSDRVIAIDIDPNKIALAEHNATVYGVEDKIEFICADFIEWIQ 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
                         +        IF+ PP  G+D
Sbjct: 102 --------------NQEKGSVDVIFLSPPWGGVD 121


>gi|317056867|ref|YP_004105334.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ruminococcus albus 7]
 gi|315449136|gb|ADU22700.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ruminococcus albus 7]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 18/109 (16%)

Query: 195 NVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNI 251
              ++E  +   K   G + ++L  G+G  +L + R     +V AVE ++ +    R N+
Sbjct: 99  TETLVELAVNKYKNTDGIVAVDLCSGSGCIALAVERFLKCSKVYAVEKSEAAAVHLRENL 158

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             N       V++   +  +    E                  I  +PP
Sbjct: 159 KMNG----SAVQLIMGDVLEYGCAESIPE-----------CDLIVCNPP 192


>gi|297160364|gb|ADI10076.1| methyltransferase small [Streptomyces bingchenggensis BCW-1]
          Length = 350

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 197 HMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAAN 254
             ++ V  A       L  ++  G G  + VLAR    RV+A +    ++  AR NIA  
Sbjct: 158 EYVDLVAEAPLPGDSSLAYDIGTGTGVLAAVLARRGVGRVVATDQDPRALACARENIARL 217

Query: 255 HVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
            +   V +VR   ++     R          +           V  P   +    +  + 
Sbjct: 218 GLAGRVDVVR---EDLFPGGRAPLVVCNPPWVPARPTSPVEYAVYDPGGRMLHGFLDSLA 274

Query: 314 AY 315
            +
Sbjct: 275 GH 276


>gi|262163831|ref|ZP_06031571.1| ribosomal protein L11 methyltransferase [Vibrio mimicus VM223]
 gi|262027811|gb|EEY46476.1| ribosomal protein L11 methyltransferase [Vibrio mimicus VM223]
          Length = 295

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L         +++  CG+G  ++   +    +V+ ++I   ++ A++ N A N V 
Sbjct: 150 LEW-LDNLDLSGKTVIDFGCGSGILAIAAIKLGAAKVIGIDIDPQALLASKDNAARNGVE 208

Query: 258 N 258
           N
Sbjct: 209 N 209


>gi|271500773|ref|YP_003333798.1| type 11 methyltransferase [Dickeya dadantii Ech586]
 gi|270344328|gb|ACZ77093.1| Methyltransferase type 11 [Dickeya dadantii Ech586]
          Length = 266

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           LE +L         +L+   G G  S  LA    +VL  +++   +  A          +
Sbjct: 39  LETLLTRLPSQPLRILDAGGGEGPMSRRLAALGHQVLLCDLSDEMITRAHEAAREQGVAD 98

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ VR ++++    + +  + 
Sbjct: 99  NMRFVRCAAQDVGAHLSQPVDL 120


>gi|254294116|ref|YP_003060139.1| SAM dependent methyltransferase [Hirschia baltica ATCC 49814]
 gi|254042647|gb|ACT59442.1| SAM dependent methyltransferase [Hirschia baltica ATCC 49814]
          Length = 305

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 201 WVLA--ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           W +           +L L+   G  SL  A+    V+ ++ +  S+   + N   + +NN
Sbjct: 122 WAVEKIRNANRPTRVLNLFGYTGVASLACAQAGAEVVHLDASPKSIGYGKENQELSDLNN 181

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            K +R    +  + ++RE    R          +  I +DPP+ G    
Sbjct: 182 -KTIRWICDDALKFLKREERRGR---------TYDGIILDPPKYGRGPK 220


>gi|238809637|dbj|BAH69427.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L+ G+G FS   L+ +  + +AV+    +++A R N       N+ IV+     + Q
Sbjct: 53  ILDLFAGSGAFSFEALSNYAVKAIAVDNNNEAIKAIRNNALKLKAENIDIVKDDVLNYLQ 112

Query: 272 AMRREREFNRLKDIDIHSYR 291
                +      D     Y+
Sbjct: 113 KNSGRKFDFIFIDAPYKEYQ 132


>gi|229014498|ref|ZP_04171616.1| Protein hemK [Bacillus mycoides DSM 2048]
 gi|228746848|gb|EEL96733.1| Protein hemK [Bacillus mycoides DSM 2048]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGNEELHIADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            + V                      L        +   +  +PP
Sbjct: 162 AD-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|254510592|ref|ZP_05122659.1| methyltransferase, UbiE/COQ5 family [Rhodobacteraceae bacterium
           KLH11]
 gi|221534303|gb|EEE37291.1| methyltransferase, UbiE/COQ5 family [Rhodobacteraceae bacterium
           KLH11]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 198 MLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAA 253
           +L+ VL       G  +L++ CG G  +L  A+       VL ++I+K  +  A    + 
Sbjct: 35  VLDLVLDRAALKPGQRVLDIGCGTGVSTLAAAKGVGPKGDVLGIDISKQFLARAEARASQ 94

Query: 254 NHVNNVKIVRMSS 266
             + N       +
Sbjct: 95  LGLANATFQYADA 107


>gi|94265689|ref|ZP_01289428.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93453775|gb|EAT04147.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 277

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 32/72 (44%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           +       Q  +L++ CG G  +L LAR    V A++ A   +   +       ++N+  
Sbjct: 50  LAMFNWQPQWRVLDVGCGPGTLALPLARRVAAVTALDYAAGMLAELQKQQQEQGLSNITS 109

Query: 262 VRMSSKEFTQAM 273
           ++ + ++  Q +
Sbjct: 110 IQGAWEDDWQQL 121


>gi|29827561|ref|NP_822195.1| methyltransferase [Streptomyces avermitilis MA-4680]
 gi|15823918|dbj|BAB69141.1| methyltransferase [Streptomyces avermitilis]
 gi|29604661|dbj|BAC68730.1| putative methyltransferase [Streptomyces avermitilis MA-4680]
          Length = 243

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 16/147 (10%)

Query: 190 PNAGINVHMLEWVLAA---TKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSV 244
            N G + H+            G    +L+L CG G  +  LA       + AV+ +   +
Sbjct: 26  ANPGYHAHLRRSARRLGLPHGGSGTRVLDLGCGTGASTAALAAVLPGAEITAVDASAGML 85

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMR--------REREFNRLKDIDIHSYRFKTIF 296
           E A    A    + V  V   ++  T+A              F      D        + 
Sbjct: 86  ERA---AAKPWPDRVTFVHAPAERLTEAGVEGPFDAVFAAYLFRNAAAPDSVLTAVHDVL 142

Query: 297 VDPPRSGLDDATVGMVQAYPHILYISC 323
               R  + D T+        +  + C
Sbjct: 143 APQGRLAVHDYTLSGRARDRTVWTVVC 169


>gi|163943016|ref|YP_001647900.1| HemK family modification methylase [Bacillus weihenstephanensis
           KBAB4]
 gi|163865213|gb|ABY46272.1| modification methylase, HemK family [Bacillus weihenstephanensis
           KBAB4]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGNEELHIADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            + V                      L        +   +  +PP
Sbjct: 162 AD-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|113461305|ref|YP_719374.1| 3-demethylubiquinone-9 3-methyltransferase [Haemophilus somnus
           129PT]
 gi|123031370|sp|Q0I3Y4|UBIG_HAES1 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|112823348|gb|ABI25437.1| 3-demethylubiquinone-9 3-methyltransferase [Haemophilus somnus
           129PT]
          Length = 238

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 179 IYRQIENSFTQPN------AGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHF 231
            + ++  S+  PN        +N   L+++     G+    +L++ CG G  S  +A+  
Sbjct: 11  KFEKMAKSWWDPNGDFKPIHQLNPTRLQYIQQQANGLTEKKVLDVGCGGGILSEAMAKQG 70

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
             V  +++    +E AR +     +  +   +++ +EF Q 
Sbjct: 71  AIVTGIDMTVAPLEVARLHAKEQGLV-IDYQQITVEEFLQK 110


>gi|254580563|ref|XP_002496267.1| ZYRO0C14432p [Zygosaccharomyces rouxii]
 gi|238939158|emb|CAR27334.1| ZYRO0C14432p [Zygosaccharomyces rouxii]
          Length = 490

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 28/221 (12%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQ 150
               + + +LRA L +       +   +   I H  L + ++     +   +  +  +I+
Sbjct: 142 YDFWKTDEILRAVLPEDLLHDIPTGFTVTGHIAHLNLREEFKPYDTFIGQVILDKNGRIE 201

Query: 151 LIGR-----ANK-----TKICLDRDYVDERLTVAGR--TLIYRQIENSFTQP--NAGINV 196
            +       A K      K+   RD   + L V  R    I++     F++   N+ ++ 
Sbjct: 202 TVVDKVSSIATKFRTFPMKVIAGRD---DSLVVEQRESDCIFKF---DFSKVYWNSRLHT 255

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
              + +++        + +++ G G F++   +    VLA ++   S +  + NI  N V
Sbjct: 256 EH-DRLVSQFFQPGQIVCDVFAGVGPFAIPAGKKKVLVLANDLNPDSFKYLQENIQLNKV 314

Query: 257 NN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            + VK   M   +F       RE  RL +    S   K + 
Sbjct: 315 AHTVKPFEMDGAQFI------RESPRLVEQWSKSDGGKILI 349


>gi|188582540|ref|YP_001925985.1| methyltransferase small [Methylobacterium populi BJ001]
 gi|179346038|gb|ACB81450.1| methyltransferase small [Methylobacterium populi BJ001]
          Length = 250

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 13/117 (11%)

Query: 189 QPNAGINVHMLEWVLAAT---KGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPS 243
           QP  G +    + VL A          L +L    G   L  AR     RV+ VE     
Sbjct: 17  QPPRGAHRAGTDAVLLARLVVPAPGDTLYDLGASTGAVGLAAARMSEACRVVLVERDPDL 76

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              AR N +AN +   + V + + +      + R         + +     +  +PP
Sbjct: 77  AALARENASANGL--AERVAVIAADVLAPGAQRR------AAGLQAGCADIVLTNPP 125


>gi|153854785|ref|ZP_01996019.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814]
 gi|149752692|gb|EDM62623.1| hypothetical protein DORLON_02017 [Dorea longicatena DSM 13814]
          Length = 292

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 12/114 (10%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           F Q N  I+ H+L+ ++ +    + D +LE+  G G  +  LA+   +V+AVEI K  + 
Sbjct: 27  FGQ-NFLIDTHVLDKIIQSANITEDDMVLEIGPGIGTMTQYLAQAAGKVIAVEIDKNLIP 85

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
                ++    +NV+++     +         +  +L D + +    K +   P
Sbjct: 86  ILEDTLS--GYDNVRVINEDVLKL--------DLKKLADEENNGKPVKVVANLP 129


>gi|325288194|ref|YP_004263984.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Cellulophaga lytica DSM 7489]
 gi|324323648|gb|ADY31113.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Cellulophaga lytica DSM 7489]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 26/122 (21%)

Query: 188 TQPNAGI------NVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVE 238
              N  +         ++ W+L       +  +L++  G+G  ++ LA++    +V A++
Sbjct: 85  FNVNTNVLIPRPETEELVSWILNEVNVNQEIAILDIGTGSGCIAITLAKNLPKAKVFALD 144

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           I+K ++  A+ N  AN+V  V                  E N L++  +   +F  I  +
Sbjct: 145 ISKEAILVAKSNAEANNVT-VTF---------------LEQNILEEPSLKQ-KFNIIVSN 187

Query: 299 PP 300
           PP
Sbjct: 188 PP 189


>gi|288800194|ref|ZP_06405653.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288333442|gb|EFC71921.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 397

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 19/117 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
           N  +LE            +L ++C  G FS+   R   + V +V+ +  +++  R NIAA
Sbjct: 214 NRSLLEQ-----YSKNRSVLNMFCYTGGFSVYAMRGQAELVHSVDSSAKAIDITRENIAA 268

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           N  +  K        F             K +D +  ++  I +DPP      A + 
Sbjct: 269 NFEDTTKHEAFCEDAF-------------KYLDANDKKYDLIILDPPAFAKHRAALK 312


>gi|229170036|ref|ZP_04297728.1| Protein hemK [Bacillus cereus AH621]
 gi|228613461|gb|EEK70594.1| Protein hemK [Bacillus cereus AH621]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGNEELHIADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            + V                      L        +   +  +PP
Sbjct: 162 AD-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|159900922|ref|YP_001547169.1| type 11 methyltransferase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893961|gb|ABX07041.1| Methyltransferase type 11 [Herpetosiphon aurantiacus ATCC 23779]
          Length = 205

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 187 FTQP--N-------AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAV 237
           F Q   N       A     ++E + A     Q  +L++ CG+G+ ++ LA+     + V
Sbjct: 11  FFQNVYNDVPPWDVAAPQPALIELINA--FPPQNPILDVGCGSGDLAIGLAQLGYTAVGV 68

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +    ++E A+   AA      + +R    +  +    E +F  + D       F  +F 
Sbjct: 69  DFVPTAIEQAQAKAAALPSEVAQRLRFLVGDGLKPSLLETKFGAIVD-----TGFYHLFN 123

Query: 298 DPPRSGLDDATVGMVQAYPH 317
                G  D     +Q    
Sbjct: 124 QADTEGFIDELAQALQPQGR 143


>gi|47225231|emb|CAG09731.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 492

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN 258
           E+V          +L++ CG G     +A+HF   VL +++++  V  A     A  + +
Sbjct: 273 EFVDMLNLKPGQKVLDVGCGIGGGDFYMAKHFGAEVLGLDLSENMVNIAMERAIAEKLPS 332

Query: 259 VKIVRMSSK 267
           V+     + 
Sbjct: 333 VQFEVADAT 341



 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q ++LEL  G G ++  L      V AV+  +  VE  R N    H +NV  ++    + 
Sbjct: 50  QSNVLELGAGIGRYTSHLLTKAKHVTAVDFMESFVEKNREN--NGHHSNVTFIQADVTKL 107


>gi|238792351|ref|ZP_04635985.1| hypothetical protein yinte0001_12780 [Yersinia intermedia ATCC
           29909]
 gi|238728277|gb|EEQ19797.1| hypothetical protein yinte0001_12780 [Yersinia intermedia ATCC
           29909]
          Length = 396

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            + A        +L  +   G F++  L  +  +V++V+ ++  ++ A+ NI  N ++  
Sbjct: 212 RLAARNYADGRRVLNCFSYTGAFAVAALMGNCKQVISVDTSQAVLDIAKQNIELNQLD-- 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
               +S  EF     R+  F  L++      +F  I +DPP+ 
Sbjct: 270 ----LSKTEFI----RDDVFQLLRNYRTQGEKFDMIIMDPPKF 304


>gi|320156518|ref|YP_004188897.1| LSU m5C1962 methyltransferase RlmI [Vibrio vulnificus MO6-24/O]
 gi|319931830|gb|ADV86694.1| LSU m5C1962 methyltransferase RlmI [Vibrio vulnificus MO6-24/O]
          Length = 397

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 10/117 (8%)

Query: 204 AATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A       ++L  +   G F L  L     RV+  ++++P+++ A++N   N        
Sbjct: 214 AMKYVKDKEVLNCFSYTGGFGLYALKGGAKRVINADVSQPALDTAKFNAELNE------- 266

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV-GMVQAYPHI 318
                +          F  L++       F  + +DPP+     A + G  + Y  I
Sbjct: 267 -FDISKKRAVFLNADVFKLLREYRDQGTTFDVVIMDPPKFAESKAQLNGACRGYKDI 322


>gi|312135346|ref|YP_004002684.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           owensensis OL]
 gi|311775397|gb|ADQ04884.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           owensensis OL]
          Length = 306

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVN 257
            +        D+L++  G+G  ++  A+     RVLAV+I + +V+ A  N   N V 
Sbjct: 161 AIQKYVKPGMDVLDVGTGSGILAIA-AKKLLASRVLAVDIDEVAVKVAMENAKLNGVE 217


>gi|294101476|ref|YP_003553334.1| Methyltransferase type 11 [Aminobacterium colombiense DSM 12261]
 gi|293616456|gb|ADE56610.1| Methyltransferase type 11 [Aminobacterium colombiense DSM 12261]
          Length = 232

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            LL++  G G  SL  A+   RV  ++++   V  AR      +++ ++     ++E
Sbjct: 50  RLLDMGAGTGFLSLGFAKKGHRVTGIDLSPEMVNFARKMAREKNIS-IEFFLGDAQE 105


>gi|289577388|ref|YP_003476015.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermoanaerobacter italicus Ab9]
 gi|289527101|gb|ADD01453.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermoanaerobacter italicus Ab9]
          Length = 279

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 35/183 (19%)

Query: 120 TLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLI 179
           T ++ R  ++  +E   R  + ++ RK  I       K        +VDE + +      
Sbjct: 38  TALFLRREEEVSKEQLERFLEFINMRKSHIPYQYIVKKQCFMGLEFFVDENVLIPRPE-- 95

Query: 180 YRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAV 237
                             ++E  L   K     +L++  G+G  ++ +A++F    V AV
Sbjct: 96  ---------------TEILVEEALKRLK-RGDVVLDIGTGSGAIAVSIAKYFPDCTVYAV 139

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +I+K ++E A++N     V +                    F  L      + +F  I  
Sbjct: 140 DISKKAIEIAKHNAEKQGVLDRIF-----------FIESDLFCNLP----PNLKFDFIVS 184

Query: 298 DPP 300
           +PP
Sbjct: 185 NPP 187


>gi|218548437|ref|YP_002382228.1| metallothionein SmtA [Escherichia fergusonii ATCC 35469]
 gi|218355978|emb|CAQ88594.1| putative AdoMet-dependent methyltransferase [Escherichia fergusonii
           ATCC 35469]
          Length = 261

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGSQKLRVLDAGGGEGQTAIKMAELGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ +  ++++    +    + 
Sbjct: 94  NMQFIHCAAQDVASHLETPVDL 115


>gi|148984975|ref|ZP_01818218.1| HemK protein [Streptococcus pneumoniae SP3-BS71]
 gi|147922673|gb|EDK73790.1| HemK protein [Streptococcus pneumoniae SP3-BS71]
 gi|301799987|emb|CBW32577.1| putative methyltransferase [Streptococcus pneumoniae OXC141]
          Length = 279

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 32/153 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+    L V  R LI R                ++E +L      
Sbjct: 62  QLAAHKPAQYIIGQADFYGMHLKVDERVLIPRPE-----------TEELVELILTENLET 110

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A ++++ +++ A  N       N++I    S 
Sbjct: 111 NLSVLDIGTGSGAIALALAKNRPDWSVTAADVSQEALDLANENAKN---QNLQIFFKKSD 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            FT+                 S ++  I  +PP
Sbjct: 168 CFTE----------------ISEKYDIIVSNPP 184


>gi|73542384|ref|YP_296904.1| methyltransferase small:ribosomal L11 methyltransferase [Ralstonia
           eutropha JMP134]
 gi|72119797|gb|AAZ62060.1| Methyltransferase small:Ribosomal L11 methyltransferase [Ralstonia
           eutropha JMP134]
          Length = 381

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANH 255
             ++ V       +    ++  G G  S VLAR    RV+A ++ + ++  AR NIA   
Sbjct: 190 EYVDLVANEPLPAKTLAFDIGAGTGVLSAVLARRGVQRVVATDMDERALACARENIAQLG 249

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            +  K V + + +     R          +           V  P S +    +  + A+
Sbjct: 250 YD--KQVEIITADLFPEGRAPLIVCNPPWVPARPSSPVERAVYDPDSAMLRGFLDGLAAH 307


>gi|20089604|ref|NP_615679.1| hypothetical protein MA0719 [Methanosarcina acetivorans C2A]
 gi|19914523|gb|AAM04159.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 197

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 28/148 (18%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVE 245
            Q  + +   +L +       +   + +L CG G  ++  A+     +V+  +    ++E
Sbjct: 26  YQTPSPLAAEILHFAY-MQGDLDESVQDLGCGTGILAIG-AKLLGARKVVGYDTDPKALE 83

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR---- 301
            AR N     V  V+ V    K+                    S   KT  ++PP     
Sbjct: 84  VARKNAERLGVE-VEFVCSDIKKV-------------------SGHVKTTLMNPPFGARV 123

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLC 329
            G D   +        ++Y   N  SL 
Sbjct: 124 KGRDRPFLSSALRTSEVIYSIHNRGSLA 151


>gi|88854372|ref|ZP_01129039.1| ubiquinone/menaquinone biosynthesis methyltransferase [marine
           actinobacterium PHSC20C1]
 gi|88816180|gb|EAR26035.1| ubiquinone/menaquinone biosynthesis methyltransferase [marine
           actinobacterium PHSC20C1]
          Length = 210

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANH 255
           +  +          ++++ CG G    +L        +V+ V+ +   ++ A      N 
Sbjct: 28  VAGIALMGLNAGDTVVDIGCGTGLSFELLVDAVGPTGQVIGVDASAQMLQVAAKRAVRNG 87

Query: 256 VNNVKIVRMSSKEFTQA 272
            +NV++V+  + + + A
Sbjct: 88  WSNVRVVQADATQLSAA 104


>gi|330809678|ref|YP_004354140.1| methyltransferase small domain [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377786|gb|AEA69136.1| Conserved hypothetical protein, containing Methyltransferase small
           domain [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 337

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 20/132 (15%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG--NGNFSLVLA 228
           L  A      +  +  F  P++     ++   L          +++ CG   G   +  A
Sbjct: 99  LLFAHSQFPTQATDAVFFGPDSYRFAQLIHTHLQQNFTAVHRAVDIGCGAGVGAIVIARA 158

Query: 229 RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           R   +VLAV+I   ++  +  N A   V NV++ R                  L+D+   
Sbjct: 159 RREAQVLAVDINPQALRLSAVNAALAEVGNVEVARSDV---------------LQDV--- 200

Query: 289 SYRFKTIFVDPP 300
              F  I  +PP
Sbjct: 201 PGNFDLIVANPP 212


>gi|325912589|ref|ZP_08174972.1| ribosomal protein L11 methyltransferase [Lactobacillus iners UPII
           60-B]
 gi|325478010|gb|EGC81139.1| ribosomal protein L11 methyltransferase [Lactobacillus iners UPII
           60-B]
          Length = 310

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
             I   ++  V+      +  +L++  G+G  S+V ++     V A +I+  ++ +A+ N
Sbjct: 155 THITTQLMLMVMERVLLSEMSVLDVGTGSGILSIVASKFGASNVCATDISDDAIASAKKN 214

Query: 251 IAANHVNNVK 260
           +A N ++NV+
Sbjct: 215 LALNDIDNVE 224


>gi|309810249|ref|ZP_07704094.1| ribosomal protein L11 methyltransferase [Lactobacillus iners SPIN
           2503V10-D]
 gi|308169521|gb|EFO71569.1| ribosomal protein L11 methyltransferase [Lactobacillus iners SPIN
           2503V10-D]
          Length = 310

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
             I   ++  V+      +  +L++  G+G  S+V ++     V A +I+  ++ +A+ N
Sbjct: 155 THITTQLMLMVMERVLLSEMSVLDVGTGSGILSIVASKFGASNVCATDISDDAIASAKKN 214

Query: 251 IAANHVNNVK 260
           +A N ++NV+
Sbjct: 215 LALNDIDNVE 224


>gi|309807575|ref|ZP_07701527.1| ribosomal protein L11 methyltransferase [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169181|gb|EFO71247.1| ribosomal protein L11 methyltransferase [Lactobacillus iners
           LactinV 01V1-a]
          Length = 289

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
             I   ++  V+      +  +L++  G+G  S+V ++     V A +I+  ++ +A+ N
Sbjct: 134 THITTQLMLMVMERVLLSEMSVLDVGTGSGILSIVASKFGASNVCATDISDDAIASAKKN 193

Query: 251 IAANHVNNVK 260
           +A N ++NV+
Sbjct: 194 LALNDIDNVE 203


>gi|302385306|ref|YP_003821128.1| ribosomal protein L11 methyltransferase [Clostridium
           saccharolyticum WM1]
 gi|302195934|gb|ADL03505.1| ribosomal protein L11 methyltransferase [Clostridium
           saccharolyticum WM1]
          Length = 318

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 1/96 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L      +  LL++  G+G   +  L      V   ++ + ++ A R N+ ANH++  K 
Sbjct: 166 LQKYVTPETTLLDVGTGSGILGITALKLGAKEVFGTDLDENAIAAVRENMKANHISGDKF 225

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
             +          +E       D+ + +     I +
Sbjct: 226 QVLQGNIIDDKAVQEAAGFEKYDVVVANILADIILL 261


>gi|302191264|ref|ZP_07267518.1| ribosomal protein L11 methyltransferase [Lactobacillus iners AB-1]
 gi|309803236|ref|ZP_07697333.1| ribosomal protein L11 methyltransferase [Lactobacillus iners
           LactinV 11V1-d]
 gi|309806611|ref|ZP_07700608.1| ribosomal protein L11 methyltransferase [Lactobacillus iners
           LactinV 03V1-b]
 gi|312871729|ref|ZP_07731817.1| ribosomal protein L11 methyltransferase [Lactobacillus iners LEAF
           3008A-a]
 gi|312872912|ref|ZP_07732972.1| ribosomal protein L11 methyltransferase [Lactobacillus iners LEAF
           2062A-h1]
 gi|312874259|ref|ZP_07734293.1| ribosomal protein L11 methyltransferase [Lactobacillus iners LEAF
           2052A-d]
 gi|329920140|ref|ZP_08276971.1| ribosomal protein L11 methyltransferase [Lactobacillus iners SPIN
           1401G]
 gi|308164744|gb|EFO66994.1| ribosomal protein L11 methyltransferase [Lactobacillus iners
           LactinV 11V1-d]
 gi|308167031|gb|EFO69213.1| ribosomal protein L11 methyltransferase [Lactobacillus iners
           LactinV 03V1-b]
 gi|311090329|gb|EFQ48739.1| ribosomal protein L11 methyltransferase [Lactobacillus iners LEAF
           2052A-d]
 gi|311091434|gb|EFQ49818.1| ribosomal protein L11 methyltransferase [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092671|gb|EFQ51027.1| ribosomal protein L11 methyltransferase [Lactobacillus iners LEAF
           3008A-a]
 gi|328936594|gb|EGG33038.1| ribosomal protein L11 methyltransferase [Lactobacillus iners SPIN
           1401G]
          Length = 310

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
             I   ++  V+      +  +L++  G+G  S+V ++     V A +I+  ++ +A+ N
Sbjct: 155 THITTQLMLMVMERVLLSEMSVLDVGTGSGILSIVASKFGASNVCATDISDDAIASAKKN 214

Query: 251 IAANHVNNVK 260
           +A N ++NV+
Sbjct: 215 LALNDIDNVE 224


>gi|300113549|ref|YP_003760124.1| methyltransferase type 11 [Nitrosococcus watsonii C-113]
 gi|299539486|gb|ADJ27803.1| Methyltransferase type 11 [Nitrosococcus watsonii C-113]
          Length = 231

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                  +L+L CG G  +L +A  +   +V+ VE+ +  +E AR  I    + N+++V 
Sbjct: 45  MPPNPSRILDLACGTGISTLAIASRYPNCQVVGVELREEYLEIARQKIQKLGLKNIELVL 104

Query: 264 MSSKEF 269
             ++++
Sbjct: 105 SRAEDY 110


>gi|259500573|ref|ZP_05743475.1| ribosomal protein L11 methyltransferase [Lactobacillus iners DSM
           13335]
 gi|259167957|gb|EEW52452.1| ribosomal protein L11 methyltransferase [Lactobacillus iners DSM
           13335]
          Length = 302

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
             I   ++  V+      +  +L++  G+G  S+V ++     V A +I+  ++ +A+ N
Sbjct: 147 THITTQLMLMVMERVLLSEMSVLDVGTGSGILSIVASKFGASNVCATDISDDAIASAKKN 206

Query: 251 IAANHVNNVK 260
           +A N ++NV+
Sbjct: 207 LALNDIDNVE 216


>gi|257464823|ref|ZP_05629194.1| HemK-like protein/protein-glutamine N-methyl transferase
           [Actinobacillus minor 202]
 gi|257450483|gb|EEV24526.1| HemK-like protein/protein-glutamine N-methyl transferase
           [Actinobacillus minor 202]
          Length = 289

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 21/116 (18%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNI 251
              LEW        +   +L+L  G G  +L LA        ++ V+    +V+ A  N 
Sbjct: 106 EVALEWAYKRLNSQETLQILDLGTGTGAIALALASELGEKAQIIGVDKQAEAVQLAEQNR 165

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                  V+ ++               F+ L      ++ F  I  +PP    DD 
Sbjct: 166 QNLGFEQVRFLQSD------------WFSVL-----ENHCFDLIVSNPPYIDKDDE 204


>gi|220915009|ref|YP_002490317.1| Methyltransferase type 11 [Methylobacterium nodulans ORS 2060]
 gi|219952760|gb|ACL63150.1| Methyltransferase type 11 [Methylobacterium nodulans ORS 2060]
          Length = 254

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 196 VHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            + L  V +  +    D+ L+L CGNG+  L L     R + ++++   +E A   + ++
Sbjct: 39  EYRLALVRSLARPRPSDVVLDLGCGNGHHLLALVPEVARGIGIDVSPGMIELAHARVRSS 98

Query: 255 -HVNNVKIVRMSSKEF 269
             ++N+      ++E 
Sbjct: 99  PWIDNLTFEVDDAEEL 114


>gi|206901000|ref|YP_002250076.1| methyltransferase, putative [Dictyoglomus thermophilum H-6-12]
 gi|206740103|gb|ACI19161.1| methyltransferase, putative [Dictyoglomus thermophilum H-6-12]
          Length = 212

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +   +       +   L+L CG G  S+  A+H   V A +I++  +E  +      
Sbjct: 20  AEEVYYLLNRWKDQGKSRFLDLGCGRGRHSIFFAKHGFEVYATDISESGIEILKEKAKLQ 79

Query: 255 HVN 257
           ++N
Sbjct: 80  NLN 82


>gi|126631892|gb|AAI34089.1| Zgc:162780 protein [Danio rerio]
          Length = 170

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 35/167 (20%)

Query: 178 LIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ----GDLLELYCGNGNFSLVLARHFDR 233
             YR   +            ++  VL   +  +    G  +++ CG+G  +L+LA HF R
Sbjct: 16  WKYRISPS----------EELIGKVLQFHRNNEYSPNGLAVDVGCGSGQGTLLLAPHFTR 65

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE---------FTQAMRREREFNR--- 281
           V+  +I+   +E  R ++   ++ NV      ++E            AM     F+    
Sbjct: 66  VVGTDISPAQLEMGRKHV---NIPNVSFRESPAEELPFEDGSVDLVTAMSAFHWFDHSRF 122

Query: 282 LKDID--IHSYRFKTIFV----DPPRSGLDDATVGMVQAYPHILYIS 322
           L++ D  +  +    +           G     + ++     ++Y S
Sbjct: 123 LQEADRVLKPHGCLALLNYTLDMELTYGNCSEALNLICNEVRVIYFS 169


>gi|73668962|ref|YP_304977.1| methyltransferase [Methanosarcina barkeri str. Fusaro]
 gi|72396124|gb|AAZ70397.1| methyltransferase [Methanosarcina barkeri str. Fusaro]
          Length = 212

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L+ ++         +L++ CG G  SL LA     V  ++I +  + AA+ +    ++++
Sbjct: 10  LDPIIYEYIKKDHLILDIGCGFGKVSLQLAFQGFYVEGIDINEAGILAAQESARKLNLDD 69

Query: 259 -VKIVRMSSKEF 269
                   + + 
Sbjct: 70  KAHFRVGDATDL 81


>gi|88809884|ref|ZP_01125390.1| Mg-protoporphyrin IX methyl transferase [Synechococcus sp. WH 7805]
 gi|88786268|gb|EAR17429.1| Mg-protoporphyrin IX methyl transferase [Synechococcus sp. WH 7805]
          Length = 238

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 17/134 (12%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
            +L W+  + +       +  CG G+ SL LA      + A +I++   + A        
Sbjct: 56  EVLAWIKDSGEFSDVSFCDAGCGVGSLSLPLAAMGAGSISASDISEAMAQEAERRAREAG 115

Query: 256 VNNVK--IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           ++  K        +  + A               H+     +F+  P++  ++    +  
Sbjct: 116 LDMTKLNFFASDLESLSGAF--------------HTVCCLDVFIHYPQAAAEEMVKHLCS 161

Query: 314 AYPHILYISCNPDS 327
                L +S  P +
Sbjct: 162 LSEQRLLVSFAPYT 175


>gi|88800756|ref|ZP_01116314.1| 3-demethylubiquinone-9 3-methyltransferase [Reinekea sp. MED297]
 gi|88776532|gb|EAR07749.1| 3-demethylubiquinone-9 3-methyltransferase [Reinekea sp. MED297]
          Length = 235

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/86 (10%), Positives = 37/86 (43%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + ++ CG G  +  LA+   +V  +++    ++ A+ +     +  ++  +M++++  +
Sbjct: 52  KVADIGCGGGILTETLAKRGGQVTGIDMTDAPLKVAQLHALEQGLEGIEYRQMTAEQLAE 111

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFV 297
               + +     ++  H     ++  
Sbjct: 112 EAPGQFDVITCMEMLEHVPDPSSVMS 137


>gi|116747958|ref|YP_844645.1| type 11 methyltransferase [Syntrophobacter fumaroxidans MPOB]
 gi|116697022|gb|ABK16210.1| Methyltransferase type 11 [Syntrophobacter fumaroxidans MPOB]
          Length = 276

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVL 227
           E + V      Y + E    Q        ++E +  +     G  +LE  CG G  +L L
Sbjct: 7   EVILVEAYVHGYSETEAGRLQ---DQASTLVELLHPSVSFPAGSRILEPGCGVGAQTLYL 63

Query: 228 ARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           A      R+ A +I+  SV  AR  +A   ++NV +    
Sbjct: 64  AGKNPASRITAFDISPDSVRRAREKVARAGLSNVAVEVAD 103


>gi|325978236|ref|YP_004287952.1| type 11 methyltransferase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178164|emb|CBZ48208.1| methyltransferase type 11 [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 249

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            K     +L+L CG G  +  LA   D+ + ++ ++  +E AR      H  +++ V   
Sbjct: 28  PKNKNQHILDLGCGTGTLTSQLADLADKTIGLDSSESMIEKARE-----HYADIQFVVGD 82

Query: 266 S 266
           +
Sbjct: 83  A 83


>gi|320593302|gb|EFX05711.1| RNA methylase family [Grosmannia clavigera kw1407]
          Length = 348

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 213 LLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKE 268
           L++++ G G  ++  AR   + RV+ +E    ++  A+ N A   + +  +  V     +
Sbjct: 87  LVDMFAGVGGNTIAFARSKRWGRVIGIERDAATLACAQNNAALFELADDAITWVHGDCFD 146

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL---DDATVGMVQAYP---HILYIS 322
               +R   E   L            +F  PP  G+   D     +    P     L+ +
Sbjct: 147 LVDRLRHRPE--TLDPALRVDPAVIVLFASPPWGGVSYRDQPVFDLATMQPYNLQTLHDA 204

Query: 323 CNPDSLC 329
           C P +  
Sbjct: 205 CGPLAHA 211


>gi|262301099|gb|ACY43142.1| arg methyltransferase [Scolopendra polymorpha]
          Length = 246

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEF 269
           +L++ CG G  S+  AR    RV+ +E +   VE A   IA NH+++V  IVR   +E 
Sbjct: 26  VLDIGCGTGILSMFAARAGAGRVIGIECSSI-VEHAEKIIATNHLDDVISIVRGKVEEI 83


>gi|229064979|ref|ZP_04200277.1| Protein hemK [Bacillus cereus AH603]
 gi|228716280|gb|EEL67992.1| Protein hemK [Bacillus cereus AH603]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGNEELHIADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            + V                      L        +   +  +PP
Sbjct: 162 AD-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|182416667|ref|ZP_02948072.1| SAM-dependent methyltransferase [Clostridium butyricum 5521]
 gi|237666253|ref|ZP_04526240.1| methyltransferase small [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379482|gb|EDT76973.1| SAM-dependent methyltransferase [Clostridium butyricum 5521]
 gi|237658343|gb|EEP55896.1| methyltransferase small [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 250

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 31/178 (17%)

Query: 154 RANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL 213
             +K    ++ D   + L + G +LI ++    F     GI+  +L     A    +   
Sbjct: 1   MGDKNIQLINEDENIDDLQLNGLSLIQKKDGFKF-----GIDAVLLS--DFANVKTRHRA 53

Query: 214 LELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
           ++L  G G    +L   +    V+ VEI    VE A  ++  N + + V  + +  K+  
Sbjct: 54  IDLCTGTGIVPFLLYGKYSPQEVVGVEIQSDMVEMAERSVKLNSLESKVSFINLDLKDI- 112

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRS----GLDDATVGMVQAYPHILYISCN 324
                    + LK++     RF  + V+PP      G+ +    +  A   I+   CN
Sbjct: 113 ---------DGLKELG----RFDVLTVNPPYKLNNSGIINPLDKLAIARHEIM---CN 154


>gi|119487764|ref|ZP_01621273.1| hypothetical protein L8106_29820 [Lyngbya sp. PCC 8106]
 gi|119455597|gb|EAW36734.1| hypothetical protein L8106_29820 [Lyngbya sp. PCC 8106]
          Length = 441

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 213 LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L+  CG+G  SLVLA      +++ V+++  SV+ A+  +      N +   +S +E  
Sbjct: 61  ILDAGCGSGYKSLVLAEANPGAKIVGVDLSAKSVDLAQKRLEHYGFTNCEFHAISIEELP 120

Query: 271 Q 271
           Q
Sbjct: 121 Q 121


>gi|120597328|ref|YP_961902.1| ribosomal protein L11 methyltransferase [Shewanella sp. W3-18-1]
 gi|146294527|ref|YP_001184951.1| ribosomal protein L11 methyltransferase [Shewanella putrefaciens
           CN-32]
 gi|166223440|sp|A4YB19|PRMA_SHEPC RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223442|sp|A1RFA3|PRMA_SHESW RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|120557421|gb|ABM23348.1| LSU ribosomal protein L11P methyltransferase [Shewanella sp.
           W3-18-1]
 gi|145566217|gb|ABP77152.1| LSU ribosomal protein L11P methyltransferase [Shewanella
           putrefaciens CN-32]
 gi|319427892|gb|ADV55966.1| ribosomal protein L11 methyltransferase [Shewanella putrefaciens
           200]
          Length = 293

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+ +     + ++++  CG+G  ++  L     +V  ++I   +++A+R N   N+V 
Sbjct: 149 LEWLDSLDLSNE-EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASRANAERNNVA 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|332519660|ref|ZP_08396124.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lacinutrix algicola 5H-3-7-4]
 gi|332044219|gb|EGI80413.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lacinutrix algicola 5H-3-7-4]
          Length = 291

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 214 LELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           L++  G+G  ++ LA+      V A++++  +++ A+ N   N+V  V+ ++        
Sbjct: 124 LDIGTGSGCIAISLAKELKEAQVYAIDVSTEAIKKAKENAVLNNVA-VEFIKCD------ 176

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                   N   +      +F  I  +PP
Sbjct: 177 ------ILNACNETLNKDLKFNVIVSNPP 199


>gi|324997239|ref|ZP_08118351.1| methyltransferase, putative [Pseudonocardia sp. P1]
          Length = 278

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 190 PNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
            N          V+    G + G +LE+ CG G+ S+ LA H D +L V+I   +VE A 
Sbjct: 79  VNPYEQQK-YGTVMDTLSGRRFGRVLEVGCGEGDLSVRLASHADALLGVDICDAAVERAA 137


>gi|323702618|ref|ZP_08114280.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532437|gb|EGB22314.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Desulfotomaculum nigrificans DSM 574]
          Length = 285

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 195 NVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARY 249
              M+E     L  +       +++  G+G  ++ LA      +V A++I+  ++  AR 
Sbjct: 97  TELMVERAVSLLRQSGARPLPAVDVGTGSGAIAVTLAHLVPGLQVYAIDISPDALAVARQ 156

Query: 250 NIAANH-VNNVKIVRMSSKEFTQA 272
           N A +   + VK  + +  E   A
Sbjct: 157 NAARHGVADRVKFCQGNLLEPIPA 180


>gi|320324450|gb|EFW80528.1| putative SAM-dependent methyltransferase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328143|gb|EFW84147.1| putative SAM-dependent methyltransferase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330882808|gb|EGH16957.1| methyltransferase [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 320

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 91/246 (36%), Gaps = 37/246 (15%)

Query: 86  LMIEMMATIRLEPLLRAKLFQ--------IDYLTSQSDQAIVTL-IYHRLLDDAWRECAI 136
           L   ++A +   P    +LF         ++++T    Q +V + ++   L+        
Sbjct: 9   LQQHLLAALNNVPTETRRLFHGRGRVWPGLEHITVDWMQGVVLVSLFKEPLEPELAALTQ 68

Query: 137 RLRDALHARKYQ--------IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
            L + +   ++Q        +Q       T   L  + VDE + +    L Y+       
Sbjct: 69  LLNELIETPQWQQSQAHTLLLQHRYLPQSTTQWLTGEVVDEWV-ITENGLRYKVDFGK-K 126

Query: 189 QPNAGINVHML---EWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSV 244
           Q N+G+ + M    EWV A  KG    +L L+     FS+  LA   D V+ +++A+ ++
Sbjct: 127 Q-NSGLFLDMRYGREWVQAQAKG--KRILNLFAYTCGFSVAALAGGADHVVNLDMARAAL 183

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
              R N   N   ++  V     +  ++  +             S  +  I +DPP    
Sbjct: 184 NRGRENHRLND-QDLGRVTFLGHDLFKSWAKVT----------RSGPYDLIIIDPPSFQK 232

Query: 305 DDATVG 310
               + 
Sbjct: 233 GSFMLD 238


>gi|282163261|ref|YP_003355646.1| putative methyltransferase [Methanocella paludicola SANAE]
 gi|282155575|dbj|BAI60663.1| putative methyltransferase [Methanocella paludicola SANAE]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +G +L++ CG G  +L LA     V  V+IA  ++E A+   A  +  +V          
Sbjct: 28  RGRILDVGCGTGENALFLAEAGCDVTGVDIAHRAIELAKEKAAKRN-KSVDFFVCDVLTL 86

Query: 270 TQAMRREREFNRLKDIDIHSYRFK 293
                RE EF+ + D  +      
Sbjct: 87  GSCF-REGEFDTVIDSGLFHTLAD 109


>gi|322418324|ref|YP_004197547.1| type 12 methyltransferase [Geobacter sp. M18]
 gi|320124711|gb|ADW12271.1| methyltransferase type 12 [Geobacter sp. M18]
          Length = 190

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
              L+L CG G  S+ LA+H   V  V+I+   +E AR   A   V+ V  +     ++ 
Sbjct: 41  KRALDLACGEGRNSIYLAQHGFEVAGVDISPRGLERARRRAAEVGVS-VDFIEADLDQWR 99

Query: 271 Q 271
            
Sbjct: 100 P 100


>gi|229136147|ref|ZP_04264900.1| Protein hemK [Bacillus cereus BDRD-ST196]
 gi|228647306|gb|EEL03388.1| Protein hemK [Bacillus cereus BDRD-ST196]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGNEELHIADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            + V                      L        +   +  +PP
Sbjct: 162 AD-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|226222798|ref|YP_002756905.1| hypothetical protein Lm4b_00166 [Listeria monocytogenes Clip81459]
 gi|255522070|ref|ZP_05389307.1| hypothetical protein LmonocFSL_12780 [Listeria monocytogenes FSL
           J1-175]
 gi|225875260|emb|CAS03957.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|328468493|gb|EGF39499.1| hypothetical protein LM1816_04427 [Listeria monocytogenes 1816]
 gi|328469707|gb|EGF40629.1| hypothetical protein LM220_06347 [Listeria monocytogenes 220]
          Length = 257

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
            +G +++L  GNG   L+L+     +++ VEI +   + A+ ++A N + + ++I+    
Sbjct: 54  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 113

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           K+ T  + +ER                 +  +PP     D ++     +  I 
Sbjct: 114 KKITDLIPKERA--------------DIVTCNPPYFATPDTSLKNTNEHFRIA 152


>gi|224498901|ref|ZP_03667250.1| hypothetical protein LmonF1_04038 [Listeria monocytogenes Finland
           1988]
          Length = 201

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 19/107 (17%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G +L++ CG G   L +A+ F   ++  V++   ++E A+ N   N + N  I   S  
Sbjct: 60  TGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKENAEINKITNTYIYESSVY 119

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +                 ++ +  ++ I  +PP          +++ 
Sbjct: 120 D-----------------NVTANDYQAIISNPPIRAGKKIVHAILEG 149


>gi|195171540|ref|XP_002026563.1| GL21966 [Drosophila persimilis]
 gi|194111479|gb|EDW33522.1| GL21966 [Drosophila persimilis]
          Length = 329

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 36/174 (20%)

Query: 3   GTLLIDQYEQQLAEKVDRLRQMMLAF----------QVPNL------QIFRSEPI-HYRM 45
             L    Y++QL +K + +  ++  +            P+L      ++  S  +  YR 
Sbjct: 158 CPLAGITYDEQLKQKSEEMSTLLKKYTQELRKINPQAKPHLDSFKFNEVLPSPTVNGYRN 217

Query: 46  RAEFHIWHDGDDLYHIMFDQQT--------KERMRIDYFMPGSLLINALMIEMMATIRLE 97
           + EF +  +      + F   +         E   + +    +        +++   + +
Sbjct: 218 KNEFTVGKNSAGEVVVGFRLGSYSDGSVEVAEVQDLPHLPDQAKWAAQSFQKLVRQSKFQ 277

Query: 98  PL--------LRAKLFQIDYLTSQSDQAIVTLIYHRLL-DDAWRECAIRLRDAL 142
           P          R  + +    T +    +V  IY   L +D  +E    L+  L
Sbjct: 278 PFNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQQELKQELKSLL 329


>gi|148653420|ref|YP_001280513.1| ribosomal protein L11 methyltransferase [Psychrobacter sp. PRwf-1]
 gi|172048533|sp|A5WFX2|PRMA_PSYWF RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|148572504|gb|ABQ94563.1| LSU ribosomal protein L11P methyltransferase [Psychrobacter sp.
           PRwf-1]
          Length = 307

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L+W+          +++  CG+G   +  L     +V +V+I   +V A + N   N V 
Sbjct: 148 LDWLTDQDL-SDKVIIDYGCGSGILGIAALLLGAKQVYSVDIDPQAVLATKQNAERNDVT 206

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +   V +  ++F +A         +   DI +       +  P   L      +++    
Sbjct: 207 HALEVYLP-EDFAKAFAA----GDIPKADIITAN----ILAKPLMELAPYLATLIKPKGG 257

Query: 318 IL 319
           I+
Sbjct: 258 IV 259


>gi|145592503|ref|YP_001154505.1| protein of unknown function Met10 [Pyrobaculum arsenaticum DSM
           13514]
 gi|145284271|gb|ABP51853.1| methyltransferase [Pyrobaculum arsenaticum DSM 13514]
          Length = 273

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A   G    +L L+ G G +++ +A+      ++AVE+     +    N   N + N  
Sbjct: 118 VARRVGEGERVLYLFAGVGPYAVAMAKFAKPRVIVAVELNPWGFKYMVENFRLNKIKNAV 177

Query: 261 IVRMSSKEFTQAMRRERE 278
            V           +R+ +
Sbjct: 178 AVHGDVAVVAPLFKRKFD 195


>gi|83311262|ref|YP_421526.1| O-methyltransferase [Magnetospirillum magneticum AMB-1]
 gi|82946103|dbj|BAE50967.1| Predicted O-methyltransferase [Magnetospirillum magneticum AMB-1]
          Length = 255

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARY 249
           A I+  +L   L A  G    +L+L CG G  +L L        V  +E+ +   E AR 
Sbjct: 28  AAIDPVLLAAALGARPGE--RVLDLGCGVGAAALCLLARCPDVEVDGLEVQETLAELARR 85

Query: 250 NIAANHVNNVKIVR-MSSKE 268
           N   N V     +    + +
Sbjct: 86  NAVLNAVEGCFGIHLGDAAK 105


>gi|86136576|ref|ZP_01055155.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp. MED193]
 gi|85827450|gb|EAQ47646.1| protein-L-isoaspartate O-methyltransferase [Roseobacter sp. MED193]
          Length = 217

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 19/126 (15%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML+ +      +   +L++ CG G  + V A+  + V+ VE  +     A+  ++   
Sbjct: 68  AKMLDALDIQRDEL---VLDVGCGLGYSTAVTAQMAEMVIGVEEDEIMSADAQAQLSEAG 124

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
            +N  +                    L +       +  I V      L  A +  ++  
Sbjct: 125 ADNAIVHVG----------------PLTEGAAEHGPYDVIIVQGGVEVLPSALLDQLKDG 168

Query: 316 PHILYI 321
             I  I
Sbjct: 169 GRIAAI 174


>gi|95930608|ref|ZP_01313342.1| Methyltransferase type 11 [Desulfuromonas acetoxidans DSM 684]
 gi|95133260|gb|EAT14925.1| Methyltransferase type 11 [Desulfuromonas acetoxidans DSM 684]
          Length = 256

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 187 FTQ-PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           FTQ P     + ML  V  +    +  +L++ CG G  +   A+    V  +++ +  ++
Sbjct: 23  FTQLPGHLDAIEML--VAMSNVTNKDHVLDVACGPGLVACEFAKTAQHVTGIDLTQAMID 80

Query: 246 AARYNIAANHVNNVKIVRMSS 266
            AR +     + N+     ++
Sbjct: 81  QARLHQQELGLTNLSWQVGTA 101


>gi|327542959|gb|EGF29409.1| methyltransferase FkbM family [Rhodopirellula baltica WH47]
          Length = 282

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAAR 248
                 +++ V  +       +++L    G FS++ AR      RV+AVE+   +VE  +
Sbjct: 91  PQREQKVID-VFRSVLRDGDTVVDLGANIGFFSILGARLVSESGRVIAVEMMPETVERLK 149

Query: 249 YNIAANHVNNVKIVRMSSKE 268
            N+  N + NV+ +  +  +
Sbjct: 150 INVELNGLANVRTIEAALAD 169


>gi|322821241|gb|EFZ27619.1| arginine N-methyltransferase, putative [Trypanosoma cruzi]
          Length = 475

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 218 CGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           CG G  SL+ AR+    V+A++ +   V+AA+     N + N+   R S +E       +
Sbjct: 190 CGMGLISLMAARNLASAVVAIDHSAI-VDAAQVVAKQNGLQNISFFRGSLREMMGNFPVK 248

Query: 277 REFNRLKDIDIHSYRFKTIFVDP 299
           +      D+ +  +    +  DP
Sbjct: 249 KF-----DVILCEWMGTFLVNDP 266


>gi|313812712|gb|EFS50426.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL025PA1]
          Length = 291

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 79  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGACPSVIDLCTGTGAIALAV 135

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+  +    V+++   +       RR          
Sbjct: 136 ASEVPGSRVSAVEVDDAALTWTRRNLCDSG---VEVLAGDALRVPDDSRR---------- 182

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 183 ------FDVVVTNPP 191


>gi|300785111|ref|YP_003765402.1| methyltransferase [Amycolatopsis mediterranei U32]
 gi|299794625|gb|ADJ45000.1| methyltransferase [Amycolatopsis mediterranei U32]
          Length = 205

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 12/130 (9%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              NV ++E V   +    G  L+L  G G  +L LAR    V A +I+  +V  A    
Sbjct: 25  PRANVRLVEVV---SPLAPGRALDLGSGAGGDALWLARRGWHVTAADIS--AVALAHLGR 79

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            A  +     +  +  +                 D+ S  +       PR  +       
Sbjct: 80  RARDLGLADRITGARHDLAATFPA-------GPFDLVSAHYLHTSFPLPRDRVLRQAAEA 132

Query: 312 VQAYPHILYI 321
           +     +L +
Sbjct: 133 LSPGGRLLVV 142


>gi|258593160|emb|CBE69479.1| SAM-dependent methyltransferase [NC10 bacterium 'Dutch sediment']
          Length = 266

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 4/124 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNN- 258
              A       +L+L CGNG  + +LA      R++ +E+     + AR  +  N +   
Sbjct: 47  AQWAAPRSTDRVLDLGCGNGVIAFLLAHRHPELRIVGLEVQPALADRARRGVHLNGLQGR 106

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP-PRSGLDDATVGMVQAYPH 317
           ++IV    ++    +        L +          +  DP  R    + T  + +A   
Sbjct: 107 IEIVEGDLRQAKGLLPIAGFDMVLCNPPYRELASGRLSPDPEIRQAKHELTATLEEAIAA 166

Query: 318 ILYI 321
           + Y+
Sbjct: 167 VRYL 170


>gi|222099697|ref|YP_002534265.1| 16S rRNA m(2)G 1207 methyltransferase [Thermotoga neapolitana DSM
           4359]
 gi|221572087|gb|ACM22899.1| 16S rRNA m(2)G 1207 methyltransferase [Thermotoga neapolitana DSM
           4359]
          Length = 211

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 20/120 (16%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
           +L   K     +L+L CG G   +VL + +    V   +I K +VE A+ N   ++V   
Sbjct: 54  LLENMKVHGKKVLDLGCGYGVIGIVLKKEYPDLEVYMSDINKRAVEFAKINAKDHNVE-- 111

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                           E  +  L +      +F  I  +PP     +  + +V+  P  L
Sbjct: 112 ---------------VEVRWGNLYEP-WEGMKFDMIVCNPPIVAGKEVWMEIVRRAPEFL 155


>gi|150390796|ref|YP_001320845.1| ribosomal protein L11 methyltransferase [Alkaliphilus
           metalliredigens QYMF]
 gi|166989892|sp|A6TSL8|PRMA_ALKMQ RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|149950658|gb|ABR49186.1| ribosomal protein L11 methyltransferase [Alkaliphilus
           metalliredigens QYMF]
          Length = 317

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV 256
           M    L    G +  + ++ CG+G  S+V A+   ++V+AV++   ++   + N+ AN V
Sbjct: 164 MCAQELEKIVGAKYTVFDIGCGSGILSIVAAKLGAEKVIAVDLDGTAIRVTQENVDANDV 223

Query: 257 NNVKIVR-MSSKEFTQAMRREREFNRLKDIDI 287
           +++  VR  +  +   +       N + DI I
Sbjct: 224 SDIVEVRHGNLMDVVTSRADVIVANIIADIII 255


>gi|154482578|ref|ZP_02025026.1| hypothetical protein EUBVEN_00245 [Eubacterium ventriosum ATCC
           27560]
 gi|149736603|gb|EDM52489.1| hypothetical protein EUBVEN_00245 [Eubacterium ventriosum ATCC
           27560]
          Length = 318

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 13/117 (11%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
            ++E+V          +L+L CG+G  S+V  + +  +V   +I   ++EA   N   N 
Sbjct: 165 QLVEYVKD-----GDKVLDLGCGSGILSIVAKKLNASKVDMTDIDPAAIEAVYDNFKVNK 219

Query: 256 V--NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +  +NVK+   +  E  + M+ E E  +  DI + +     I    P +G+ D  + 
Sbjct: 220 LSMDNVKVEAGNVLE-DEKMQAEFEAEQ-YDIVVANILADVII---PIAGIVDRFLK 271


>gi|87123645|ref|ZP_01079495.1| Ribosomal protein L11 methyltransferase [Synechococcus sp. RS9917]
 gi|86168214|gb|EAQ69471.1| Ribosomal protein L11 methyltransferase [Synechococcus sp. RS9917]
          Length = 304

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 57/188 (30%), Gaps = 15/188 (7%)

Query: 97  EPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
           EP   A L  ++ L    D A+   ++  L D+ W     +  +        + L     
Sbjct: 61  EPERVALLASLEPLARTFDLALADPLWCELDDEDWSLTWKQHWEPDPVGATLLILPAW-- 118

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
                       E        L+ R    S     +     +    L         + +L
Sbjct: 119 -----------LEPPAEQAHRLVLRMDPGSAFGTGSHPTTRLCLEALEQQPPEGLRVADL 167

Query: 217 YCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK-IVRMSSKEFTQAMR 274
            CG+G   L  LA     V AV+    +V A   N     V     +VR  S +   A+ 
Sbjct: 168 GCGSGILGLAALAMGARTVCAVDTDSLAVRATAENARLGAVPAESLVVRQGSADVLAALL 227

Query: 275 REREFNRL 282
             +  + L
Sbjct: 228 EGQPADLL 235


>gi|71660786|ref|XP_822106.1| arginine N-methyltransferase [Trypanosoma cruzi strain CL Brener]
 gi|70887499|gb|EAO00255.1| arginine N-methyltransferase, putative [Trypanosoma cruzi]
          Length = 385

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 218 CGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           CG G  SL+ AR+    V+A++ +   V+AA+     N + N+   R S +E       +
Sbjct: 100 CGMGLISLMAARNLASAVVAIDHSAI-VDAAQVVAKQNGLQNISFFRGSLREMMGNFPVK 158

Query: 277 REFNRLKDIDIHSYRFKTIFVDP 299
           +      D+ +  +    +  DP
Sbjct: 159 KF-----DVILCEWMGTFLVNDP 176


>gi|71661271|ref|XP_817659.1| arginine N-methyltransferase [Trypanosoma cruzi strain CL Brener]
 gi|70882864|gb|EAN95808.1| arginine N-methyltransferase, putative [Trypanosoma cruzi]
          Length = 385

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 218 CGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRE 276
           CG G  SL+ AR+    V+A++ +   V+AA+     N + N+   R S +E       +
Sbjct: 100 CGMGLISLMAARNLASAVVAIDHSAI-VDAAQVVAKQNGLQNISFFRGSLREMMGNFPVK 158

Query: 277 REFNRLKDIDIHSYRFKTIFVDP 299
           +      D+ +  +    +  DP
Sbjct: 159 KF-----DVILCEWMGTFLVNDP 176


>gi|323127350|gb|ADX24647.1| 16S rRNA m(2)G 1207 methyltransferase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 210

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLA--VEIAKPSVEAARYNIAANHVNNVKI 261
                  +L+L CG G   + LA+    V A  V+I   +++ A+ N   N V+    
Sbjct: 65  HFNKGEWVLDLGCGYGPLGISLAK-VQEVEATLVDINNRAIDLAQKNARQNQVDVTIF 121


>gi|288960381|ref|YP_003450721.1| TPR repeat-containing protein [Azospirillum sp. B510]
 gi|288912689|dbj|BAI74177.1| TPR repeat-containing protein [Azospirillum sp. B510]
          Length = 428

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 11/185 (5%)

Query: 98  PLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA-- 155
              RA   + D+  +  +   V  + H    +       RL    H      + IG A  
Sbjct: 155 GYRRALALRPDWADAHDNLGAVLYLLHEQGGEMAAAALARLWRRDHPANPLARHIGAAIA 214

Query: 156 -NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLL 214
             +       DYV +   +       +  E  +          +   +   T G   D+L
Sbjct: 215 GEEADSRAPDDYVRQTFDLFAEEFDRKLAELDY-----RAPALLAGMLADETLGGALDVL 269

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN---IAANHVNNVKIVRMSSKEFTQ 271
           +  CG G  +  L  H  R++ V++++  ++ AR+       +    V  +      F  
Sbjct: 270 DAGCGTGLCAAALRPHARRLVGVDLSEGMLDRARHRGLYDELHGAELVGFLAGRPDSFDL 329

Query: 272 AMRRE 276
            M  +
Sbjct: 330 VMAAD 334


>gi|251794968|ref|YP_003009699.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2]
 gi|247542594|gb|ACS99612.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2]
          Length = 272

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 18/114 (15%)

Query: 156 NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLE 215
           +KT    + +Y  E                    PN+G+     E + A     +  LL+
Sbjct: 70  DKTITIYEEEYKTENYYWGTE-------------PNSGV----YEVLKAMPPSRRLKLLD 112

Query: 216 LYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           + CG G  ++  AR+   V  ++++   +E  +       V  V +V+    +F
Sbjct: 113 IGCGEGRDAVFFARNGYEVTGIDVSDAGIEKTKRLAEHAGVQ-VNVVKADVLDF 165


>gi|229470430|sp|A8H786|RLMG_SHEPA RecName: Full=Ribosomal RNA large subunit methyltransferase G;
           AltName: Full=23S rRNA m2G1835 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rlmG
          Length = 413

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 17/104 (16%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA--VEIAKPSVEAARYNIAANHVNNV 259
           +    KG    +++L CGNG   L   + F       ++ ++ +V +AR N A N ++N 
Sbjct: 225 LDNMPKGDYKSIVDLGCGNGILGLHAKQVFPEAYIHFIDDSEMAVASARENWALNKLDN- 283

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDI---HSYRFKTIFVDPP 300
                       A+  E+      D        +R   +  +PP
Sbjct: 284 -----------PALVGEQATFGWDDCLTNMSEGFRPDLVLCNPP 316


>gi|157962924|ref|YP_001502958.1| rRNA (guanine-N(2)-)-methyltransferase [Shewanella pealeana ATCC
           700345]
 gi|157847924|gb|ABV88423.1| rRNA (guanine-N(2)-)-methyltransferase [Shewanella pealeana ATCC
           700345]
          Length = 424

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 17/104 (16%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLA--VEIAKPSVEAARYNIAANHVNNV 259
           +    KG    +++L CGNG   L   + F       ++ ++ +V +AR N A N ++N 
Sbjct: 236 LDNMPKGDYKSIVDLGCGNGILGLHAKQVFPEAYIHFIDDSEMAVASARENWALNKLDN- 294

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDI---HSYRFKTIFVDPP 300
                       A+  E+      D        +R   +  +PP
Sbjct: 295 -----------PALVGEQATFGWDDCLTNMSEGFRPDLVLCNPP 327


>gi|118472123|ref|YP_884514.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
 gi|118173410|gb|ABK74306.1| methyltransferase [Mycobacterium smegmatis str. MC2 155]
          Length = 237

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 22/136 (16%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANH 255
           +EW+        G +L++ CG GN +  LAR        L V+I++P +  A    A   
Sbjct: 74  VEWL---RIPPGGTVLDIGCGPGNITAQLARAAGLDGLALGVDISEPMLARAV--AAEAG 128

Query: 256 VNNVKIVRMSS------KEFTQAMRREREFNRLKDIDIHSYRFKTIF-------VDPPRS 302
              V  VR  +       E   A      F  + D          +        +  P +
Sbjct: 129 -RQVGFVRADAQQLPFRDEVFDAATSLAVFQLIPDPVAAVSEIVRVLKPGGRVAIMVPTA 187

Query: 303 GLDDATVGMVQAYPHI 318
           G       + +    I
Sbjct: 188 GAVKPVTFLARGGARI 203


>gi|111021210|ref|YP_704182.1| site-specific DNA-methyltransferase (adenine-specific) [Rhodococcus
           jostii RHA1]
 gi|110820740|gb|ABG96024.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Rhodococcus jostii RHA1]
          Length = 262

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYN 250
              ++E   A   G    + +L CG+G     LA   D   + AV+I   +V  AR N
Sbjct: 82  TAFLVEQAAAL-AGPHAVVADLCCGSGAVGAALAETGDGIELYAVDIDPAAVRCARRN 138


>gi|222055564|ref|YP_002537926.1| methyltransferase type 11 [Geobacter sp. FRC-32]
 gi|221564853|gb|ACM20825.1| Methyltransferase type 11 [Geobacter sp. FRC-32]
          Length = 198

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLV---LARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +LA        +L++ CG G   +    LA    +V  V++    VE A  NI    + N
Sbjct: 65  LLAGKIRPGETVLDVGCGAGVDIIRAAGLAGPDGKVYGVDLTSSMVERAADNIKKMQIAN 124

Query: 259 VKIVRMSSKEF 269
                 +++  
Sbjct: 125 AWAEEGAAESL 135


>gi|51981300|emb|CAF60519.1| hypothetical protein [Streptomyces kanamyceticus]
 gi|85813950|emb|CAF31573.1| hypothetical protein [Streptomyces kanamyceticus]
          Length = 240

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++L CGNG  +  LA  + RVL V+I+  +++ AR    A+        ++   E++ A
Sbjct: 53  IIDLGCGNGTQTRFLADRYPRVLGVDISAAALDHARR---ADPAGQADFRQLDIAEWSVA 109

Query: 273 MRREREFN 280
            +   E  
Sbjct: 110 EQLHAELG 117


>gi|134293400|ref|YP_001117136.1| methyltransferase type 11 [Burkholderia vietnamiensis G4]
 gi|134136557|gb|ABO57671.1| Methyltransferase type 11 [Burkholderia vietnamiensis G4]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 13/91 (14%)

Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L++ CG G  +L +AR   +      V+I+   + AAR     + V   + V   ++  
Sbjct: 53  VLDVGCGTGAVTLAIARRLAKDAQCTGVDISARMIAAARERAERDGVA-AEFVHADAQ-- 109

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           T    RER        D+   RF  +F D P
Sbjct: 110 THPFARER-------FDLIVSRFGVMFFDDP 133


>gi|326798507|ref|YP_004316326.1| PUA domain containing protein [Sphingobacterium sp. 21]
 gi|326549271|gb|ADZ77656.1| PUA domain containing protein [Sphingobacterium sp. 21]
          Length = 394

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 62/172 (36%), Gaps = 35/172 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
            ++ A       +L+ +C +G FSL  L      V +V+ +  ++E    NI+ N  +  
Sbjct: 210 RLIVAQHAPGKKILDCFCYSGGFSLNALKMGASEVFSVDSSALAIETLIQNISENAFDKS 269

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV-QAYPHI 318
           K   + S              +LK       +F  + +DPP+     +++    +AY  +
Sbjct: 270 KHTAIQS----------DVNKQLKAFKEQGEKFDLVILDPPKYAPSRSSLEKASRAYKEL 319

Query: 319 --------------LYISC----NPDSLCRDL--SILSTTHTIERLALFDQF 350
                            SC    + D+  + L  + L      + +   DQF
Sbjct: 320 NRLGLLLLSSGGLLATFSCSGAMDIDTFKQVLAWAALDAG---KEIQFIDQF 368


>gi|322417812|ref|YP_004197035.1| 50S ribosomal protein L11 methyltransferase [Geobacter sp. M18]
 gi|320124199|gb|ADW11759.1| ribosomal protein L11 methyltransferase [Geobacter sp. M18]
          Length = 306

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 75/217 (34%), Gaps = 32/217 (14%)

Query: 71  MRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA 130
           +  D        +   ++E+         L    F +D   +  D +I T+  +  LDD+
Sbjct: 8   IACDVPAEMVDTLADFLVELTGNGVGVDNLHLDTFSLD---TLEDSSIKTVKGYLPLDDS 64

Query: 131 WRECAIRLRDALHARK-------------YQIQLIGRANKTKICLDRDYVDERLTVAGRT 177
             +  I++   L                   I+    AN  K+      + +RL +    
Sbjct: 65  LEDMRIKIEQFLAQHGPDFAGFVYTPPVVTIIKNEDWANNWKVHFKPVRIGKRLVIKPTW 124

Query: 178 LIYRQIENSF-TQ------------PNAGINVHMLEWVL--AATKGIQGDLLELYCGNGN 222
             Y+++E     Q            P   + +  LE +   A    +   +L++  G+G 
Sbjct: 125 EEYQEVEGDLVIQIDPGMAFGTGAHPTTKMCLESLERIAFDACGCKLPDPVLDVGTGSGV 184

Query: 223 FSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            S+  A      + AV+I   +V   + N+  N V +
Sbjct: 185 LSIAAALLGATEITAVDIDPEAVRVTQENLELNGVAD 221


>gi|296814764|ref|XP_002847719.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238840744|gb|EEQ30406.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 234

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 6/122 (4%)

Query: 199 LEWVLAATKGIQGD------LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            +W+         +      +L+  CG G  +  L  H   V+ ++I++  V     NIA
Sbjct: 37  YKWICPQWGDTSNNNMKQFRMLDYACGAGFMTRTLLPHVSEVIGIDISQNMVAEYNKNIA 96

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           A      K+        +     E       + D+    F     + P   L      + 
Sbjct: 97  ALGFPADKMFAKKGNLLSDTPSEEFSRPEYFNFDLIIIGFALHHFEAPDLALKRLVKRLA 156

Query: 313 QA 314
             
Sbjct: 157 AG 158


>gi|172062886|ref|YP_001810537.1| DNA methylase N-4/N-6 domain-containing protein [Burkholderia
           ambifaria MC40-6]
 gi|171995403|gb|ACB66321.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria
           MC40-6]
          Length = 283

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--SVEAARYNIAA 253
            ++E ++ A+    G +L+ + G+G  ++  AR     +  EI +   ++   R N  A
Sbjct: 220 EIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYCAIAHERVNALA 278


>gi|157150169|ref|YP_001450440.1| protoporphyrinogen oxidase [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074963|gb|ABV09646.1| possible protoporphyrinogen oxidase [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 276

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 37/192 (19%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E +   R+ L A   Q QL+       I    D+    L V  R LI R           
Sbjct: 46  EVSQEEREQLKAI--QKQLLAHKPAQYIIGSSDFNGLNLKVDERVLIPRPE--------- 94

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYN 250
                ++E +L+        +L++  G+G  +L LA  R   ++ A ++++ ++  A  N
Sbjct: 95  --TEELVELILSENPETPLSVLDIGTGSGAIALALANSRPDWQITASDLSRDALSLAAEN 152

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDA 307
             +  + N+ +V+    +  Q                   +F  I  +PP       D+ 
Sbjct: 153 AQSCGL-NLTLVQSDCLDAIQG------------------KFDIIASNPPYISEEDKDEV 193

Query: 308 TVGMVQAYPHIL 319
            + ++ + PH+ 
Sbjct: 194 GLNVLTSEPHMA 205


>gi|146303502|ref|YP_001190818.1| type 11 methyltransferase [Metallosphaera sedula DSM 5348]
 gi|145701752|gb|ABP94894.1| Methyltransferase type 11 [Metallosphaera sedula DSM 5348]
          Length = 247

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 175 GRTLIYRQIENSFTQPNAGINV-----HMLEWVLA--ATKGIQGDLLELYCGNGNFSLVL 227
               + R  E+ F   N  + V        +W+       G+   +L++ CG G  S  L
Sbjct: 4   RNETVLRIFESDFY-INEMVKVWEEGKKWADWIAELTNRYGLGKRVLDVPCGVGRVSSYL 62

Query: 228 ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
                 V  V+I+   +E A+ N     V N + ++   ++ ++ +  E+
Sbjct: 63  VSQKFEVTGVDISDRMLEIAKRN-----VPNARFIKGDMRKLSEILGNEK 107


>gi|54288333|gb|AAV31621.1| predicted 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
           methylase [uncultured alpha proteobacterium EBAC2C11]
          Length = 246

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           I   ML+   A   G++  +L++ CG G  +  +AR    V  +++   +V AA+ +   
Sbjct: 51  IQTRMLDNDNAVLGGLK--ILDIGCGGGLLAEPMARLGASVTGIDVTDAAVTAAKTHAKT 108

Query: 254 NHVNNVKIVRMSSKEFTQA 272
             ++ +    +S++E  ++
Sbjct: 109 MQLS-INYQTISAEELAKS 126


>gi|52550462|gb|AAU84311.1| ribosomal RNA adenine dimethylase [uncultured archaeon GZfos9D1]
          Length = 234

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A     +  LLE+  G GNF++  AR+ + V A++++   +  A+       ++N+  
Sbjct: 46  IKAICLEREHSLLEIGTGTGNFAIEAARYCNNVYAIDVSSTMIAYAKQKAQTMGISNISF 105

Query: 262 VRM 264
            + 
Sbjct: 106 FQA 108


>gi|56420608|ref|YP_147926.1| SAM-dependent methyltransferase [Geobacillus kaustophilus HTA426]
 gi|56380450|dbj|BAD76358.1| SAM-dependent methyltransferase [Geobacillus kaustophilus HTA426]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               +++L  GNG F++ LA+     V AV++    +E  +       + N++      
Sbjct: 36  PDDTIMDLGAGNGYFTIPLAQATNGNVYAVDVQPEMIELLKQRARQLGMTNIQYQVADV 94


>gi|311744775|ref|ZP_07718571.1| 16S rRNA methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311311892|gb|EFQ81813.1| 16S rRNA methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 199

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 42/115 (36%), Gaps = 23/115 (20%)

Query: 207 KGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           +     LL+L CG G  +L  AR      V AV++   + E    N   + +     VR+
Sbjct: 56  RPSTSRLLDLGCGWGPLALAAARTHPSAEVWAVDVNDRARELTALNAERHGLA----VRV 111

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
           +S                 D      +F  I+ +PP R G       +++  P +
Sbjct: 112 AS----------------PDGVPPEVQFDAIWSNPPIRVGKQALHELLLRWLPRL 150


>gi|257481704|ref|ZP_05635745.1| hypothetical protein PsyrptA_00468 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331013314|gb|EGH93370.1| methyltransferase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 320

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 91/246 (36%), Gaps = 37/246 (15%)

Query: 86  LMIEMMATIRLEPLLRAKLFQ--------IDYLTSQSDQAIVTL-IYHRLLDDAWRECAI 136
           L   ++A +   P    +LF         ++++T    Q +V + ++   L+        
Sbjct: 9   LQQHLLAALNNVPTETRRLFHGRGRVWPGLEHITVDWMQGVVLVSLFKEPLEPELAALTQ 68

Query: 137 RLRDALHARKYQ--------IQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
            L + +   ++Q        +Q       T   L  + VDE + +    L Y+       
Sbjct: 69  LLNELIETPQWQQSQAHTLLLQHRYLPQSTTQWLTGEVVDEWV-ITENGLRYKVDFGK-K 126

Query: 189 QPNAGINVHML---EWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSV 244
           Q N+G+ + M    EWV A  KG    +L L+     FS+  LA   D V+ +++A+ ++
Sbjct: 127 Q-NSGLFLDMRYGREWVQAQAKG--KRILNLFAYTCGFSVAALAGGADHVVNLDMARAAL 183

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
              R N   N   ++  V     +  ++  +             S  +  I +DPP    
Sbjct: 184 NRGRENHRLND-QDLGRVTFLGHDLFKSWAKVT----------RSGPYDLIIIDPPSFQK 232

Query: 305 DDATVG 310
               + 
Sbjct: 233 GSFMLD 238


>gi|242240521|ref|YP_002988702.1| methyltransferase type 11 [Dickeya dadantii Ech703]
 gi|242132578|gb|ACS86880.1| Methyltransferase type 11 [Dickeya dadantii Ech703]
          Length = 273

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           ++WVL   +   G L++  CG G ++  ++     V+ ++I + SVE A    A+  +
Sbjct: 44  IDWVLK-NRAAPGSLIDFGCGPGLYANEISERGWHVVGIDINEESVEYAERYAASKGL 100


>gi|168308159|ref|ZP_02690834.1| methyltransferase, HemK family [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902800|gb|EDT49089.1| methyltransferase, HemK family [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 290

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 26/168 (15%)

Query: 154 RANKTKICLDRDYVD-ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGD 212
                   L   Y   +R  V      +R            + + ++  V+  +     +
Sbjct: 66  NGKPLVRILGYGYFCAKRFYVDKNVFAFRVE--------TELLIDVVNKVIQQSTYKIKN 117

Query: 213 LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           ++++ CG+G   L    +F++  V  ++I+  ++   + N   +++ NV  +  S +E+ 
Sbjct: 118 VIDVCCGSGVLGLSTKMNFNQLNVSLLDISIDAINNCKKNAKYHNLTNVNFIHKSMQEYF 177

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
              ++               RF  I  +PP    +      V  Y  I
Sbjct: 178 LNTKK---------------RFDLIICNPPYIKSNYELNREVLDYDPI 210


>gi|505672|gb|AAA83423.1| RdmD [Streptomyces purpurascens]
          Length = 237

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 205 ATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           A +   G LL++ CG G      A  F  V  VE+++P  E AR       +  V +   
Sbjct: 34  AEQAGAGRLLDVACGTGGHLRHFADLFAHVEGVELSEPMAEEARAA-----LPGVTVHAG 88

Query: 265 SSKEF 269
             ++F
Sbjct: 89  DMRDF 93


>gi|15643700|ref|NP_228746.1| hypothetical protein TM0938 [Thermotoga maritima MSB8]
 gi|4981476|gb|AAD36019.1|AE001757_12 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 254

 Score = 45.0 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +L         +L++ CG G F++ +A+   +V+ V+++   ++ AR       ++ V
Sbjct: 29  AKILENFHIRGKKVLDVACGEGTFAVEIAKQGFKVVGVDLSSEMLKFARKRAKEESIS-V 87

Query: 260 KIVRMSSKEF 269
             ++   +E 
Sbjct: 88  VFLKKDMREL 97


>gi|325918740|ref|ZP_08180832.1| 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325535034|gb|EGD06938.1| 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 260

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 19/168 (11%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +N   L +V A  +     +L++ CG G  S  +AR   +V A+++A   V+ AR + 
Sbjct: 59  HALNPVRLAYVSARQELAGARVLDVGCGGGLLSESMARLGAQVTAIDLAPELVKVARLHS 118

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
             + V  V     S ++         +     ++  H      I           A   +
Sbjct: 119 LESGVQ-VDYRVQSVEDLAAEQPGSFDAVTCMEMLEHVPDPTAII---------RACASL 168

Query: 312 VQAYPHILYISCN--PDSLCRDLSILSTTHTIERLALFDQFPYTRHME 357
           ++    +   + N  P +    L+++   + I RL        T H E
Sbjct: 169 LKPGGKLFLSTLNRTPAAFA--LAVVGAEY-IARLLPK----GTHHYE 209


>gi|309805275|ref|ZP_07699327.1| ribosomal protein L11 methyltransferase [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165509|gb|EFO67740.1| ribosomal protein L11 methyltransferase [Lactobacillus iners
           LactinV 09V1-c]
          Length = 310

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
             I   ++  V+      +  +L++  G+G  S+V ++     V A +I+  ++ +A+ N
Sbjct: 155 THITTQLMLMVMERVLLSEMSVLDVGTGSGILSIVASKFGASNVCATDISDDAIASAKKN 214

Query: 251 IAANHVNNVK 260
           +A N ++NV+
Sbjct: 215 LALNDIDNVE 224


>gi|302037877|ref|YP_003798199.1| putative Ribosomal RNA small subunit methyltransferase D
           [Candidatus Nitrospira defluvii]
 gi|300605941|emb|CBK42274.1| putative Ribosomal RNA small subunit methyltransferase D
           [Candidatus Nitrospira defluvii]
          Length = 190

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 27/144 (18%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+LY G G+  +  L+R    V  VE  + ++     N+    +     V   + + 
Sbjct: 43  ARVLDLYAGTGSIGIEALSRGAAHVTFVEADRQALRLINSNLEQCGLQQSANVC--ACQV 100

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329
           +Q  RR  ++         S  +  +F DPP   L    + M Q +        N   L 
Sbjct: 101 SQFFRRATQW---------SGPYDIVFCDPPYQ-LTPELITMAQEW--------NAGWLA 142

Query: 330 RDLSILSTTHTIERLALFDQFPYT 353
            D  ++        +      P T
Sbjct: 143 DDAVVIIEHGKKAEI------PQT 160


>gi|296131985|ref|YP_003639232.1| Methyltransferase type 11 [Thermincola sp. JR]
 gi|296030563|gb|ADG81331.1| Methyltransferase type 11 [Thermincola potens JR]
          Length = 277

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 213 LLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+L  G G F   LA        RV+ V++    +E AR   A  + +NV+      + 
Sbjct: 79  VLDLGSGAG-FDCFLAASKVGPAGRVIGVDMTPEMIERARTIAARENFSNVEFRLGEIEN 137

Query: 269 FTQA 272
              A
Sbjct: 138 LPVA 141


>gi|221640206|ref|YP_002526468.1| methyltransferase small [Rhodobacter sphaeroides KD131]
 gi|221160987|gb|ACM01967.1| Methyltransferase small [Rhodobacter sphaeroides KD131]
          Length = 253

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNV 259
             A        +LEL CG G  SL LA      R+  +E+       AR N A N V  +
Sbjct: 36  AAAVPASAGQSVLELGCGAGVASLCLAARVPGLRLAGLELQPAYAALARENAAMNGVA-L 94

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
           ++V          +RR  + + + +   +     T   DP R 
Sbjct: 95  EVVEGDLSAMPAVLRRSFD-HVIANPPYYPAGGGTGAADPGRE 136


>gi|219848802|ref|YP_002463235.1| methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
 gi|219543061|gb|ACL24799.1| Methyltransferase type 11 [Chloroflexus aggregans DSM 9485]
          Length = 253

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-- 257
           EW           +LEL CG G   L LA    R+  V+++   +  AR  +AA  +   
Sbjct: 27  EWARRTGDP----ILELMCGTGRVLLPLAAAGYRLTGVDLSPAMLAIARERLAAEGLTDQ 82

Query: 258 ------NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
                 +V+ + +    FT A      F  L  I+        +     R G+
Sbjct: 83  VTLIEADVRQMVLPENHFTLAFVAVNSFMHLTTIEDQLATLAAVRRTLTRKGI 135


>gi|13541905|ref|NP_111593.1| methyltransferase [Thermoplasma volcanium GSS1]
 gi|14325337|dbj|BAB60241.1| hypothetical protein [Thermoplasma volcanium GSS1]
          Length = 334

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 212 DLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
            +L+++ G G F+L   +  H +   A +I   +++  + N++AN +  +VK +   ++
Sbjct: 183 TVLDMFAGIGYFTLPAVKYGHAEHTDACDINPEAIKFLKKNLSANGISKSVKPICGDAR 241


>gi|325136475|gb|EGC59081.1| hypothetical protein NMBM0579_0853 [Neisseria meningitidis M0579]
 gi|325201924|gb|ADY97378.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
 gi|325208325|gb|ADZ03777.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
          Length = 315

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 32/156 (20%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRM 264
                 L L+   G+F++  A         V+++   ++ A+ N   N ++    KIVR 
Sbjct: 149 AAGKRFLNLFSYTGSFTVYAATGGAASSETVDLSNTYLDWAKRNFELNGIDTERHKIVRA 208

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM------------- 311
              ++ Q    E              RF  I +DPP        + +             
Sbjct: 209 DVFQYLQTAYGE------------GRRFDLIVMDPPSFSNSKKMLDILDIQRDHKKLIDG 256

Query: 312 ---VQAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
              + A   ILY S N  S   D  ++S  + ++ +
Sbjct: 257 AVKLLASDGILYFSNNLSSFVLD-DLVSEQYAVKDI 291


>gi|325961839|ref|YP_004239745.1| methylase of HemK family [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467926|gb|ADX71611.1| putative methylase of HemK family [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
           +  +  A+   +G +++L CG+G     +AR      + A +I   +VE AR N+     
Sbjct: 93  VRLLHHASSASRGVVVDLCCGSGAVGAAIARRRPDIELHAADIDPAAVECARRNV----- 147

Query: 257 NNVKIVRMSSKEFTQAMR-REREFNRLKDIDIHSYRFKTIFVDPPRS 302
            N     +   +  +A+  R R+  ++  ++        I   PP +
Sbjct: 148 -NAFGAHVHQGDLFEALPLRLRDRVQVLAVNAPYVPTGAIAAMPPEA 193


>gi|291618242|ref|YP_003520984.1| YfcB [Pantoea ananatis LMG 20103]
 gi|291153272|gb|ADD77856.1| YfcB [Pantoea ananatis LMG 20103]
          Length = 340

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   IEN F     
Sbjct: 102 ERHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELIENRF----- 155

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 156 ----------AGLITDKPRHILDMCTGSGCIAIACAYAFPDAEVDAVDISHDALAVAEQN 205

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  +++V  +R               F  L  +     ++  I  +PP
Sbjct: 206 IEEHGLIHHVTPIRAD------------LFRELPPV-----QYDLIVTNPP 239


>gi|241759168|ref|ZP_04757276.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria flavescens SK114]
 gi|241320587|gb|EER56864.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Neisseria flavescens SK114]
          Length = 270

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 31/141 (21%)

Query: 173 VAGRTLIYRQIENSF----TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGN 222
           + G  + Y   E  F       N  +        H++E VL      QG + +L  G+G 
Sbjct: 56  LKGEPMAYLLGEREFYGRRFAVNPHVLIPRPETEHLVEAVLKR-LPPQGRVWDLGTGSGA 114

Query: 223 FSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
            ++ +A  R    V A +I+  +++ AR N A      V+  + S               
Sbjct: 115 IAVTVALERVDADVRASDISTGALDTARQNAAELGAK-VEFAQGS--------------- 158

Query: 281 RLKDIDIHS-YRFKTIFVDPP 300
              D D  S  R+  I  +PP
Sbjct: 159 -WFDTDRPSEGRYDVIVSNPP 178


>gi|256378799|ref|YP_003102459.1| methyltransferase type 11 [Actinosynnema mirum DSM 43827]
 gi|255923102|gb|ACU38613.1| Methyltransferase type 11 [Actinosynnema mirum DSM 43827]
          Length = 267

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 16/132 (12%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAA 247
             +   + + V+   +   G+ +L+  CG G+ +   AR       V AV+++   +   
Sbjct: 19  PVVWDRLGQAVVDLGEPAPGEHVLDACCGIGSSAAPAARAVGPDGSVDAVDLSPELLGVG 78

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           R   A   + NV+  +                 R    D+    F   F+ P        
Sbjct: 79  RRRAA--GLGNVRFAQADVT---------AWPGRDGGYDLVQCAFGVFFL-PDMDDAARG 126

Query: 308 TVGMVQAYPHIL 319
            V +++     +
Sbjct: 127 LVRLLRPGGRFV 138


>gi|148557396|ref|YP_001264978.1| 3-demethylubiquinone-9 3-methyltransferase [Sphingomonas wittichii
           RW1]
 gi|148502586|gb|ABQ70840.1| 3-demethylubiquinone-9 3-methyltransferase [Sphingomonas wittichii
           RW1]
          Length = 244

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 11/110 (10%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN------NVKIVRMSSKE 268
           ++ CG G  +  LAR    V  ++ A  +V  AR++     +        V+++   S +
Sbjct: 72  DVGCGAGLLAEPLARMGAAVTGIDAAPENVAVARHHAKKQGLTIDYRAGGVEVLAGESFD 131

Query: 269 FTQAMR-----REREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
              +M       +      +   + +     I   P R+ L    +  V 
Sbjct: 132 LVTSMEVIEHVADPAAFVARLAGLLAPDGIMILSTPNRTPLSKLAMITVA 181


>gi|56707339|ref|YP_169235.1| hemK protein [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669809|ref|YP_666366.1| hemK protein [Francisella tularensis subsp. tularensis FSC198]
 gi|134301376|ref|YP_001121344.1| HemK family methyltransferase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|224456402|ref|ZP_03664875.1| HemK family methyltransferase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370016|ref|ZP_04986023.1| modification methylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874174|ref|ZP_05246884.1| methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56603831|emb|CAG44802.1| hemK protein homolog [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110320142|emb|CAL08185.1| hemK protein homolog [Francisella tularensis subsp. tularensis
           FSC198]
 gi|134049153|gb|ABO46224.1| methyltransferase, hemK family [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151568261|gb|EDN33915.1| modification methylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840173|gb|EET18609.1| methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158464|gb|ADA77855.1| methyltransferase, hemK family protein [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 284

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKI 160
           AK  Q D  T    Q I+  +        +     +L ++ L     +I  +        
Sbjct: 15  AKFNQCDISTKHDLQMIICDVLGVDKTYLYINLDKQLDKNTLKKIDEKILRLLAGEPLAY 74

Query: 161 CLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
            L  + + +++L V   TLI R                ++  VL   +     L  L+L 
Sbjct: 75  ILGYKYFWNQKLYVTKDTLIPR-----------ADTETVVATVLDDIQNKDAQLKILDLG 123

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G G  +L LA      +V+AV++ + S++ A+ N  AN++ NVK ++ S          
Sbjct: 124 TGTGAIALALAAELANSQVVAVDLYQQSLDVAKKNAQANNITNVKFIQSS---------- 173

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                     ++ + +F  I  +PP   L D  +  
Sbjct: 174 -------WYTNLDTDKFDIIVSNPPYIDLADTNIDQ 202


>gi|116194087|ref|XP_001222856.1| hypothetical protein CHGG_06761 [Chaetomium globosum CBS 148.51]
 gi|88182674|gb|EAQ90142.1| hypothetical protein CHGG_06761 [Chaetomium globosum CBS 148.51]
          Length = 301

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           LA        +++  CG G+ +L +AR   RV A+++    +  A+ N+A   +
Sbjct: 66  LALGLPQGSQVVDAGCGVGHVALYMARRGLRVTAIDLIDHHIAKAQRNVARARL 119


>gi|189500401|ref|YP_001959871.1| hypothetical protein Cphamn1_1464 [Chlorobium phaeobacteroides BS1]
 gi|189495842|gb|ACE04390.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
          Length = 394

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 14/111 (12%)

Query: 210 QGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + + L+++  +G F L  L         V+I+  ++  A  N   N+++N  ++   + E
Sbjct: 219 KAETLDVFTSDGGFGLNALYGGAASATMVDISHNALLRAEKNAKLNNLSNYDMIEGDAFE 278

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI 318
               +  E+              +  + +DPP            + AY  +
Sbjct: 279 VLHRLISEK------------RSYDLVILDPPSFTKSRKNLSSALHAYKKL 317


>gi|294340107|emb|CAZ88478.1| putative S-adenosyl-L-methionine-dependent methyltransferases
           /Modification methylase HemK [Thiomonas sp. 3As]
          Length = 324

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A        ++++ CG+GN +L LA      +V   +I++ +++ AR N    +++  +
Sbjct: 140 MAEAAATPPIVIDVCCGSGNLALALAHAVPQAQVHGADISQTAIDLARANTQ--NLDLGQ 197

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
            V + + +       E +      + +  Y         P   +   
Sbjct: 198 RVSLHTGDLLAPFGAEFQGKVDLVVSLPPYISTAKLDTMPHEIVGHE 244


>gi|271966820|ref|YP_003341016.1| type 11 methyltransferase [Streptosporangium roseum DSM 43021]
 gi|270509995|gb|ACZ88273.1| methyltransferase type 11 [Streptosporangium roseum DSM 43021]
          Length = 355

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNV 259
           + A  +     + ++ CG G  ++ LAR + +  V  ++I  PSVE A  N A    + V
Sbjct: 168 LDALLRRPGARVADVGCGGGWSTIALARAYPQAVVEGIDIDGPSVELAVRNAARAGAD-V 226

Query: 260 KIVRMSSKEFT-QAMRREREFNRLKDID 286
                 +      A      F  + D+ 
Sbjct: 227 AFRHGDAHALAGNAYDAVFAFECIHDMP 254


>gi|291287097|ref|YP_003503913.1| ribosomal L11 methyltransferase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884257|gb|ADD67957.1| ribosomal L11 methyltransferase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 256

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAAR 248
           P       +LE V +       ++++  CG+G  ++  ++    +V A +    ++    
Sbjct: 109 PTTKCAAELLENVCS-----GKNVIDAGCGSGILAITASKRGAAKVYAFDNDPVALFNTY 163

Query: 249 YNIAANHVNNVKIVRMSSKEF 269
            NI+ NH++N+       + F
Sbjct: 164 ENISLNHIDNIYAWAGVIESF 184


>gi|213962731|ref|ZP_03390992.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
 gi|213954726|gb|EEB66047.1| conserved hypothetical protein [Capnocytophaga sputigena Capno]
          Length = 388

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 6/131 (4%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q ++            A        L+L CG G  +  L+  F  V  VE  +  +   +
Sbjct: 73  QTSSEATAQ-----YKAQNLQGERFLDLTCGFGIDAFFLSEKFKEVTLVEENEELLSKVK 127

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +N           +  S++ F +A         L      + + K   ++     + +  
Sbjct: 128 HNWQVLECK-ATFINGSAEAFLKATTGHYNLIYLDPDRRDALKQKKFLLEDLSPNILELQ 186

Query: 309 VGMVQAYPHIL 319
             ++Q    +L
Sbjct: 187 SVLLQKADKVL 197


>gi|261408215|ref|YP_003244456.1| type 11 methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261284678|gb|ACX66649.1| Methyltransferase type 11 [Paenibacillus sp. Y412MC10]
          Length = 225

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 33/68 (48%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              + E  L         +L+  CG+G F+L ++RH ++++  + +   +  +R  + ++
Sbjct: 29  AEEVFEERLVEMLPQYHSVLDAGCGHGEFTLRMSRHAEKIIGFDNSAEMIRISRSLLESS 88

Query: 255 HVNNVKIV 262
              NV+ V
Sbjct: 89  GTRNVEFV 96


>gi|149918744|ref|ZP_01907231.1| methyltransferase small [Plesiocystis pacifica SIR-1]
 gi|149820345|gb|EDM79761.1| methyltransferase small [Plesiocystis pacifica SIR-1]
          Length = 412

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 13/113 (11%)

Query: 191 NAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAAR 248
           N      ++  + A   G + G +L+L C  G F++  AR    RV+AV+ +   ++   
Sbjct: 217 NRRAFASLVAGLPAPHLGTEPGAILDLGCHVGGFAIAAARASTRRVVAVDQSAAVLDYVV 276

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            N AAN +                M    +   L         F  I  DPP+
Sbjct: 277 RNAAANGLE-----PGRVSSVRADMFGSLDAPELAGP------FSAIVFDPPK 318


>gi|47570470|ref|ZP_00241103.1| hemK protein [Bacillus cereus G9241]
 gi|47552866|gb|EAL11284.1| hemK protein [Bacillus cereus G9241]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFDDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|322706614|gb|EFY98194.1| Crg1p S-adenosylmethionine-dependent methyltransferase [Metarhizium
           anisopliae ARSEF 23]
          Length = 279

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
                 +QG LL++ CG+G  +  ++ HF  V+ ++ +   V  A           V   
Sbjct: 8   AKQHFPLQGSLLDIGCGHGLIAREMSPHFGSVIGIDTSPGMVRQASSMTKD---EKVTFY 64

Query: 263 RMSSKEFT 270
           +  +++ +
Sbjct: 65  QGGAEDLS 72


>gi|320333617|ref|YP_004170328.1| hypothetical protein Deima_1010 [Deinococcus maricopensis DSM
           21211]
 gi|319754906|gb|ADV66663.1| Conserved hypothetical protein CHP00095 [Deinococcus maricopensis
           DSM 21211]
          Length = 175

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 15/98 (15%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L AT+   G  L+LY G+G   L  A     V   E+   +V+A   N     +     +
Sbjct: 35  LLATRAPTGTFLDLYAGSGAVGLEAASRGYTVTLTELDLRAVKALEANATHLQLPTRPRI 94

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           R           R      L ++      F  +FVDPP
Sbjct: 95  R-----------RGDGLALLPELGA----FDVVFVDPP 117


>gi|331656992|ref|ZP_08357954.1| protein SmtA [Escherichia coli TA206]
 gi|331055240|gb|EGI27249.1| protein SmtA [Escherichia coli TA206]
          Length = 261

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VLA     +  +L+   G G  ++ +A    +V+  +++   ++ A+    A  V +
Sbjct: 34  LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           +++ +  ++++    +    + 
Sbjct: 94  DMQFIHCAAQDVASHLETPVDL 115


>gi|300117842|ref|ZP_07055609.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus SJ1]
 gi|298724706|gb|EFI65381.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus SJ1]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFDDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|283788394|ref|YP_003368259.1| ribosomal RNA small subunit methyltransferase C [Citrobacter
           rodentium ICC168]
 gi|282951848|emb|CBG91558.1| ribosomal RNA small subunit methyltransferase C [Citrobacter
           rodentium ICC168]
          Length = 342

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 21/94 (22%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            +G +L++ CG G  S+ LA H  +V     +++ P+VEA+R  +AAN +          
Sbjct: 196 TKGKVLDVGCGAGVLSVALASHSPKVRLTLCDVSAPAVEASRATLAANGIEGDVFASNVF 255

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            E T                    RF  I  +PP
Sbjct: 256 SEVT-------------------GRFDMIISNPP 270


>gi|259501367|ref|ZP_05744269.1| methyltransferase domain protein [Lactobacillus iners DSM 13335]
 gi|302190912|ref|ZP_07267166.1| Methyltransferase small [Lactobacillus iners AB-1]
 gi|259167220|gb|EEW51715.1| methyltransferase domain protein [Lactobacillus iners DSM 13335]
          Length = 204

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            I G++L++  G G   L  A+      V  +++ + ++  A+ N   N ++NV I    
Sbjct: 60  EISGNILDVGTGYGPLGLFAAKLWPKSHVTMIDVNERALALAKRNAQLNEIDNVNIF--- 116

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           S E  +++  + +F               I  +PP          ++Q    
Sbjct: 117 SSECYRSLDEQEQFG-------------LILTNPPIRAGKQVVDDILQNAKK 155


>gi|217967500|ref|YP_002353006.1| methyltransferase type 11 [Dictyoglomus turgidum DSM 6724]
 gi|217336599|gb|ACK42392.1| Methyltransferase type 11 [Dictyoglomus turgidum DSM 6724]
          Length = 252

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+L CG G  +L L +   R + ++ ++  +E A+       V NV+   M        
Sbjct: 48  ILDLGCGFGRHTLELGKRGYRAIGIDRSEDLIEIAKEEAKKEKVFNVEFYIM-------- 99

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
                     KDI+   Y+F  +F      GL 
Sbjct: 100 --------EYKDIEKLGYKFDVVFSLYTSFGLS 124


>gi|193662159|ref|XP_001950779.1| PREDICTED: trimethylguanosine synthase-like [Acyrthosiphon pisum]
          Length = 248

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
           S+      +   M+             +++ +CG G+ S+  A    +V+A++I    +E
Sbjct: 68  SWYSATPEVISRMIAERCKCDL-----IIDGFCGAGSNSIQFALTSKKVIAIDIDPIKIE 122

Query: 246 AARYNIAANHV-NNVKIVRMSSKEFTQAMRREREF 279
            AR N     V + ++ +          ++ +  F
Sbjct: 123 LARNNAKVYGVSDRIEFIIGDYYALAPTLKADVVF 157


>gi|81427947|ref|YP_394946.1| putative nucleotide methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78609588|emb|CAI54634.1| Putative nucleotide methyltransferase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 201

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 165 DYVDERLTVAGRTLIYRQI--ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
           ++ ++  T   R   ++       F++         L   +  ++   G +L++ CG G 
Sbjct: 13  EHAEKNWTFELRGFNFKFTTDNGVFSKNTVDYGSRALLDAVDLSETPAGPILDMGCGYGP 72

Query: 223 FSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
             + LA+     ++  V++ + ++  A+ N   N + NV I 
Sbjct: 73  IGMTLAKLAPERQIDMVDVNERALGLAQKNCDLNQIQNVAIF 114


>gi|330466247|ref|YP_004403990.1| modification methylase, HemK family protein [Verrucosispora maris
           AB-18-032]
 gi|328809218|gb|AEB43390.1| modification methylase, HemK family protein [Verrucosispora maris
           AB-18-032]
          Length = 272

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR--HFDRVL-AVEIAKPSVEAARYNIAANHVNNVKIVRM 264
           G    ++EL CG+G  +  LAR  H  R+L AV++   +V  AR N+A      V +   
Sbjct: 93  GPAARVVELCCGSGALTRALARRLHAPRLLAAVDVDPAAVACARGNLAELA---VPVYAG 149

Query: 265 SSKEFTQAMRR 275
              +   A  R
Sbjct: 150 DLFDALPATWR 160


>gi|326428781|gb|EGD74351.1| hypothetical protein PTSG_06361 [Salpingoeca sp. ATCC 50818]
          Length = 436

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+E+ CG G   + LA      + ++I +  ++ ++     N  +NV+ V   + +  + 
Sbjct: 247 LIEVGCGTGETIIPLASAAKYCIGIDINEDFIKYSQV---QNKADNVRFVCGDATKLQEL 303

Query: 273 MRREREFNRLKDI 285
           +      +   + 
Sbjct: 304 LSTSEVADWAGEP 316


>gi|319654963|ref|ZP_08009037.1| hypothetical protein HMPREF1013_05659 [Bacillus sp. 2_A_57_CT2]
 gi|317393388|gb|EFV74152.1| hypothetical protein HMPREF1013_05659 [Bacillus sp. 2_A_57_CT2]
          Length = 246

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 16/94 (17%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266
            +G+L++L  GNG   L L+      +  VEI +   + A  +I  N +   ++++R   
Sbjct: 45  QKGNLIDLCSGNGVIPLFLSTRTKGAITGVEIQERLHDMAVRSIEYNKLQGRIEMIRGDI 104

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KE  Q +                 +F  +  +PP
Sbjct: 105 KEIHQVLGY--------------GKFDVVTCNPP 124


>gi|315605141|ref|ZP_07880190.1| ubiquinone/menaquinone biosynthesis methyltransferase [Actinomyces
           sp. oral taxon 180 str. F0310]
 gi|315313138|gb|EFU61206.1| ubiquinone/menaquinone biosynthesis methyltransferase [Actinomyces
           sp. oral taxon 180 str. F0310]
          Length = 235

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           NV M     A        +L+L  G G  S  LA+    V+A ++++  +E  R      
Sbjct: 40  NVWMTALRKAVAPHPGERILDLAAGTGTSSAALAKGGAEVVACDLSEGMIEVGRE----- 94

Query: 255 HVNNVKIVRMSS 266
              +++ VR ++
Sbjct: 95  RHPDIEFVRGNA 106


>gi|269962459|ref|ZP_06176808.1| ribosomal protein L11 methyltransferase [Vibrio harveyi 1DA3]
 gi|269832755|gb|EEZ86865.1| ribosomal protein L11 methyltransferase [Vibrio harveyi 1DA3]
          Length = 295

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L +       +++  CG+G  ++   +    +V+ ++I   +++A+R N   N V 
Sbjct: 150 LEW-LESLDLSGKTVIDFGCGSGILAIAAIKLGAGKVIGIDIDPQALQASRDNAERNGVA 208

Query: 258 N 258
           +
Sbjct: 209 D 209


>gi|268325998|emb|CBH39586.1| conserved hypothetical protein, SAM dependent methyltransferase
           family [uncultured archaeon]
          Length = 188

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANH 255
            + + AA       +LE+ CG G F++ +A+       V AV++   ++E  +  I    
Sbjct: 40  YKLLRAAGLKPGQKVLEVGCGPGFFTIPVAKIVGEEGFVYAVDVHPLAIERVKEKIRREG 99

Query: 256 VNNVKIVRMSSKE 268
           + N+  +  ++ +
Sbjct: 100 IKNITPILANASD 112


>gi|124806855|ref|XP_001350850.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
 gi|23496979|gb|AAN36530.1| conserved Plasmodium protein [Plasmodium falciparum 3D7]
          Length = 568

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 28/188 (14%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH---RLLDDAWRECAIR 137
            L   L+      I    + R   F      +   + +   I H    LL+         
Sbjct: 244 KLCYRLINAEGDNIPGLIIDRYDDFFSIQHITLGCEMLAYNINHAILELLNPKAIIFRND 303

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQ----IENS--FTQPN 191
           +++ L+ +    +        K+   +  V E++ +      +        N+  F   N
Sbjct: 304 IKERLNEKLEIYK--------KVLFGK--VPEQVRLIENKCFFLIDLINSPNTGWFF--N 351

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARY 249
                 ++          Q  +L+L+   G F +  ++  +   V+ VE     VE A  
Sbjct: 352 RKELRKLV-----CNYANQKQVLDLFSYVGCFGIQCSKIGNAKYVICVEKNSYFVELAIK 406

Query: 250 NIAANHVN 257
           +   N++ 
Sbjct: 407 SANLNNLK 414


>gi|78223987|ref|YP_385734.1| arsenite S-adenosylmethyltransferase [Geobacter metallireducens
           GS-15]
 gi|78195242|gb|ABB33009.1| UbiE/COQ5 methyltransferase [Geobacter metallireducens GS-15]
          Length = 266

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 212 DLLELYCGNGNFSLVLARHF----DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +L+L  G G F   LA         V+ V++    +  +R N    +  NV       +
Sbjct: 85  TVLDLGSG-GGFDCFLAARAVGHTGHVIGVDMTPEMITKSRRNADKANFGNVDFRLGELE 143

Query: 268 EFTQA 272
               A
Sbjct: 144 NLPVA 148


>gi|330818723|ref|YP_004362428.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           gladioli BSR3]
 gi|327371116|gb|AEA62472.1| cyclopropane-fatty-acyl-phospholipid synthase [Burkholderia
           gladioli BSR3]
          Length = 366

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 192 AGINVHMLE-WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA--R 248
           A     MLE +   A       +L+L CG G+ SL LAR + R   V ++    + A   
Sbjct: 116 AEAEQAMLELYAERAGLADGQRILDLGCGWGSLSLWLARRYPRAQIVGLSNSHGQRAFIE 175

Query: 249 YNIAANHVNNVKIVRMSSKE 268
              A   + N++IV  +  +
Sbjct: 176 QRAAELGLANLRIVTGNVVD 195


>gi|315223720|ref|ZP_07865570.1| protein-(glutamine-N5) methyltransferase [Capnocytophaga ochracea
           F0287]
 gi|314946295|gb|EFS98294.1| protein-(glutamine-N5) methyltransferase [Capnocytophaga ochracea
           F0287]
          Length = 281

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 195 NVHMLEWVLAATKGIQGDL--LELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              +++WVL         +  L++  G+G  ++ LA+      V A+++++ +++ A+ N
Sbjct: 98  TEELVDWVLQEYPDKSEKIKILDVGTGSGCIAISLAKALPNAVVTAIDVSEGALKVAKRN 157

Query: 251 IAANHV 256
              N+V
Sbjct: 158 AELNNV 163


>gi|313885075|ref|ZP_07818827.1| methyltransferase domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619766|gb|EFR31203.1| methyltransferase domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 245

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 189 QPNA-GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q N        +++            L+L CG G FS + A+    ++ +++    V+ A
Sbjct: 12  QVNNLAAYQEWIDFTKQQVPTPPKRALDLACGTGYFSFLWAKSCQALIGIDLDPAMVKMA 71

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQA 272
              +     + ++       + T A
Sbjct: 72  EKKLGQ-GESPLEFKVEDMTDLTFA 95


>gi|227329836|ref|ZP_03833860.1| putative metallothionein SmtA [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 261

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 1/99 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L  +L         +L+   G G  +  LA    +VL  +++   ++ A+   A   V +
Sbjct: 34  LSHLLTQLPARPLRILDAGGGEGQMACRLAALGHQVLLCDVSGEMIQRAKNAAAEQGVTH 93

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
           N++ V+ ++++  Q M    +      +     + + + 
Sbjct: 94  NMRFVQCAAQDVAQYMDGPADLILFHAVLEWVAQPQQVL 132


>gi|224119810|ref|XP_002318168.1| predicted protein [Populus trichocarpa]
 gi|222858841|gb|EEE96388.1| predicted protein [Populus trichocarpa]
          Length = 182

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 37/120 (30%), Gaps = 7/120 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +  CG G  ++ LA+    V A +I+   V  A            ++   S KE    
Sbjct: 13  VCDAGCGTGCLAIPLAKEGAAVYASDISAAMVAEAEKQAKE------QLQAGSEKELVMP 66

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDL 332
               ++   L            +   P     D     +     + L +S  P +   DL
Sbjct: 67  KFEVKDLESLNGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAENRLLLSFAPKTFYYDL 125


>gi|295836497|ref|ZP_06823430.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. SPB74]
 gi|197699009|gb|EDY45942.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. SPB74]
          Length = 281

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 25/132 (18%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARH 230
             R L  +     F          ++ W + A +    ++  +++L  G+G  +L LA+ 
Sbjct: 75  YFRYLELQVGPGVF--VPRPETESVVGWAIDAVRAMDVVEPLVVDLCTGSGAIALALAQE 132

Query: 231 FDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
             R  V AVE+++ ++   R N+     + V + +  +            F  L ++D  
Sbjct: 133 VPRSTVHAVELSEDALVWTRRNVEG---SRVHLHQGDA------------FAALPELD-- 175

Query: 289 SYRFKTIFVDPP 300
             +   +  +PP
Sbjct: 176 -GQVDLVISNPP 186


>gi|183601831|ref|ZP_02963200.1| hypothetical protein BIFLAC_06116 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682746|ref|YP_002469129.1| DNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190322|ref|YP_002967716.1| hypothetical protein Balac_0263 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195728|ref|YP_002969283.1| hypothetical protein Balat_0263 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218716|gb|EDT89358.1| hypothetical protein BIFLAC_06116 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620396|gb|ACL28553.1| DNA methyltransferase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248714|gb|ACS45654.1| hypothetical protein Balac_0263 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250282|gb|ACS47221.1| hypothetical protein Balat_0263 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|289178043|gb|ADC85289.1| Methyltransferase [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793309|gb|ADG32844.1| hypothetical protein BalV_0256 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 191

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 21/125 (16%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVE-------AA 247
             M   + +        +L+L+ G G   +  L+R  + ++ VE + P+ +       A 
Sbjct: 29  EAMFSRLDSTGILSGARVLDLFGGTGALGIEALSRGANELVVVEASGPAAKLIAHTLTAL 88

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           R+N A     N +IV   ++ +    +                 F  + +DPP +     
Sbjct: 89  RHNPAWEESMNARIVHAKAERYAAKAK-------------VGEPFDVVLIDPPYAFSTAD 135

Query: 308 TVGMV 312
              ++
Sbjct: 136 CERLL 140


>gi|160892739|ref|ZP_02073529.1| hypothetical protein CLOL250_00270 [Clostridium sp. L2-50]
 gi|156865780|gb|EDO59211.1| hypothetical protein CLOL250_00270 [Clostridium sp. L2-50]
          Length = 185

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           L+L+ G+G  ++  L+R   + + VE  + +V+    N+    + +  +++         
Sbjct: 46  LDLFSGSGAIAIEALSRGAKQAVLVEQNRKAVDCINRNLEFTGLKDKARVITGDCVAAID 105

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           ++ R                F  IF+DPP
Sbjct: 106 SLER------------SGLVFDIIFMDPP 122


>gi|217973190|ref|YP_002357941.1| hypothetical protein Sbal223_2014 [Shewanella baltica OS223]
 gi|217498325|gb|ACK46518.1| conserved hypothetical protein [Shewanella baltica OS223]
          Length = 335

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 209 IQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266
               +L L+          A     RV+ V+ +  ++   + N A N V+N  + V+  +
Sbjct: 146 QDKTVLNLFSYTCGIGTAAAIGGATRVMNVDFSSFALATGKANAALNQVSNVCEFVQSDA 205

Query: 267 KEFTQAMRRE----REFNRLKDID-IHSYRFKTIFVDPPRSGLDD 306
               + +       R   +L     +   +F  +F+DPPR     
Sbjct: 206 FPALRQLAGLSVGGRRNQKLPSFPKLPQTQFDLVFLDPPRYAKSA 250


>gi|119719610|ref|YP_920105.1| putative RNA methylase [Thermofilum pendens Hrk 5]
 gi|119524730|gb|ABL78102.1| putative RNA methylase [Thermofilum pendens Hrk 5]
          Length = 374

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 92/272 (33%), Gaps = 31/272 (11%)

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
           LL A  F +  L     + ++ +     L + + +    LR+ L A +    L       
Sbjct: 104 LLHATTFNVKIL---DCEKMLGVEEKAKLREDFSKILKELREGLRASRTGPDLEF----V 156

Query: 159 KICLDRDYVDERLTVAG---RTLIYRQIEN-SFTQP---NAGINVHMLEWVLAATK---- 207
            I L RD     LTV         +R  E  +++QP      +++ +L   LA       
Sbjct: 157 VIVLSRDRALLSLTVKRYRKDRFAFRSPERRAYSQPSALTPWLSLTILNLALATQPAGGE 216

Query: 208 -GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            G     L+ +CG G   +  A      + V++    V  ++ N++   +  V  + +  
Sbjct: 217 GGFDVAFLDPFCGTGGVLIEAALQGMYSVGVDVNYRQVRGSKKNLSVLGLRAVADLVLC- 275

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATVGMVQAYPHILYISCN 324
            + T+   R   FN       +     T   DP     G     V  V+    I + + +
Sbjct: 276 -DSTKLPFRAEAFNAAAFDPPYGRLAPTHGRDPGEILRGALRNVVESVKPRGRIAFFASD 334

Query: 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHM 356
                 D   L   +    L        TRH+
Sbjct: 335 MLLQNVDAPALCDVYEHSSL--------TRHV 358


>gi|332687008|ref|YP_004456782.1| methylase of polypeptide chain release factors [Melissococcus
           plutonius ATCC 35311]
 gi|332371017|dbj|BAK21973.1| methylase of polypeptide chain release factors [Melissococcus
           plutonius ATCC 35311]
          Length = 279

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 43/115 (37%), Gaps = 18/115 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
              ++++ L   +     ++++  G G  ++ L  AR   +V  ++I+K ++  A+ N  
Sbjct: 97  TEELVDYCLKENEAAYSTIVDVGTGTGAIAISLKHARPQWQVTGIDISKQALIVAQENAK 156

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
             +   +  +                   L+ + ++  +   I  +PP     + 
Sbjct: 157 ILN-TTIDFLSGDL---------------LEPLMMNGQKVDMIISNPPYISKAEK 195


>gi|330752434|emb|CBL87384.1| modification methylase HemK [uncultured Flavobacteria bacterium]
          Length = 273

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 27/123 (21%)

Query: 187 FTQPNAGI------NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF--DRVLAV 237
           F   N+ +         +L W+L +    +   +L++  G+   ++ LA+ F   ++ A+
Sbjct: 76  FF-VNSDVLIPRPETEELLVWILKSIDRNKALKILDIGTGSACIAVALAKQFPNAKIYAM 134

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +++  +++ A+ N   N V N+  +             E +  R KD+      F  I  
Sbjct: 135 DVSADALKVAKTNAKNNKV-NINFI-------------EADIFRTKDLT---SSFDVIVS 177

Query: 298 DPP 300
           +PP
Sbjct: 178 NPP 180


>gi|319779046|ref|YP_004129959.1| Methylase of polypeptide chain release factor [Taylorella
           equigenitalis MCE9]
 gi|317109070|gb|ADU91816.1| Methylase of polypeptide chain release factor [Taylorella
           equigenitalis MCE9]
          Length = 275

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 195 NVHMLEWVLAA--TKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              ++E  L    T      +L+L  G+G  ++ +A    +  V AV+I+K +++ A  N
Sbjct: 91  TELLVECALDFLKTTPTGARILDLGTGSGAIAISIANFMPKCEVYAVDISKEALKVAYLN 150

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              NH  ++K    S             F+ L         F  I  +PP    DD  + 
Sbjct: 151 AK-NHGVHIKFFEGS------------WFDALP---YDVGTFDLIVSNPPYIASDDIHLQ 194

Query: 311 M 311
           +
Sbjct: 195 L 195


>gi|317485129|ref|ZP_07944011.1| methyltransferase domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316923664|gb|EFV44868.1| methyltransferase domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 248

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D+L++ CG G FS++LAR    V+A +  +  +E A  N A   V+ + + +  +++ 
Sbjct: 48  DILDIGCGPGFFSILLARLGHSVVAFDYTEGMLERASRNAAEADVS-IVVRQGDAQDL 104


>gi|311898178|dbj|BAJ30586.1| hypothetical protein KSE_48080 [Kitasatospora setae KM-6054]
          Length = 272

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 212 DLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L++ CG G  +  LA       RV+ VE     +  A  + A   + N+        E
Sbjct: 37  RVLDVGCGPGTITADLAELVGPDGRVVGVEPGAEVLAEAARHAAGRGLANLSYEVADVYE 96

Query: 269 FTQA 272
              A
Sbjct: 97  LPYA 100


>gi|312622232|ref|YP_004023845.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202699|gb|ADQ46026.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 306

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +        D+L++  G+G  ++  A+ F   RVLAV+I + +V+ A  N   N V  +
Sbjct: 161 AIQKYVKPGMDVLDVGTGSGILAIA-AKKFLARRVLAVDIDEVAVKVAEENARLNGVE-I 218

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +I +    E  +        N + DI +   R     +   R  +    + 
Sbjct: 219 EIKKNDLVEGIEEKFDVVIANIVADIIVRLSRDVKKVLKDDRIFISSGIIE 269


>gi|304408893|ref|ZP_07390514.1| hypothetical protein Sbal183DRAFT_0350 [Shewanella baltica OS183]
 gi|307302896|ref|ZP_07582651.1| hypothetical protein Sbal175DRAFT_0849 [Shewanella baltica BA175]
 gi|304352714|gb|EFM17111.1| hypothetical protein Sbal183DRAFT_0350 [Shewanella baltica OS183]
 gi|306913256|gb|EFN43678.1| hypothetical protein Sbal175DRAFT_0849 [Shewanella baltica BA175]
          Length = 335

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 209 IQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266
               +L L+          A     RV+ V+ +  ++   + N A N V+N  + V+  +
Sbjct: 146 QDKTVLNLFSYTCGIGTAAAIGGATRVMNVDFSSFALATGKANAALNQVSNVCEFVQSDA 205

Query: 267 KEFTQAMRRE----REFNRLKDID-IHSYRFKTIFVDPPRSGLDD 306
               + +       R   +L     +   +F  +F+DPPR     
Sbjct: 206 FPALRQLAGLSVGGRRNQKLPSFPKLPQTQFDLVFLDPPRYAKSA 250


>gi|302519997|ref|ZP_07272339.1| methyltransferase [Streptomyces sp. SPB78]
 gi|318062489|ref|ZP_07981210.1| type 12 methyltransferase [Streptomyces sp. SA3_actG]
 gi|318078268|ref|ZP_07985600.1| type 12 methyltransferase [Streptomyces sp. SA3_actF]
 gi|302428892|gb|EFL00708.1| methyltransferase [Streptomyces sp. SPB78]
          Length = 224

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N  ++  V        G  L+L CG G   + LAR    V   +IA+ ++  AR + A  
Sbjct: 36  NTALVREVAEL---PPGRALDLGCGEGADVVWLARQGWTVTGTDIAETALVRARAHAAEA 92

Query: 255 HVNNVKIV 262
            V +    
Sbjct: 93  GVADRTRF 100


>gi|255016023|ref|ZP_05288149.1| ribosomal protein L11 methyltransferase [Bacteroides sp. 2_1_7]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 20/204 (9%)

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
                +IN ++   +  I  E    ++   + Y++         L   + LDD   +  +
Sbjct: 13  PIEKEIINDVLAAELGEIGFESFTESEKGLLGYISEA-------LYDKKTLDDKLADFPL 65

Query: 137 RLRDALHARKYQIQLIGRANKTK-----ICLDRDYVDE-RLTVAGRTLIYRQIEN---SF 187
                 +  K+           K     I +  + +       A     Y  I +   +F
Sbjct: 66  ENTRIDYTSKWVESKDWNEEWEKNYFKPIRIGNECIIRASFHEAEPGYTYNIIIDPKMAF 125

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVE 245
              N      M+  +L      + +LL++ CG    ++ LAR     RV A++I + +  
Sbjct: 126 GTGNHETTYLMISEMLKLDLEGK-ELLDIGCGTAVLAI-LARLKGAKRVAAIDIDEWAYN 183

Query: 246 AARYNIAANHVNNVKIVRMSSKEF 269
            A  NI  NH  ++++    +++ 
Sbjct: 184 NALENIRLNHTEDIQVALGGAEKI 207


>gi|242239629|ref|YP_002987810.1| metallothionein SmtA [Dickeya dadantii Ech703]
 gi|242131686|gb|ACS85988.1| Methyltransferase type 11 [Dickeya dadantii Ech703]
          Length = 261

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           LE +L         +L+   G G  S  LA    +VL  +++   ++ A+     +    
Sbjct: 34  LETLLPTLPQRPLYILDAGGGEGAMSRRLAALGHQVLLCDLSDAMIQRAQAAAEEDGVAQ 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N++ VR + ++    + R  + 
Sbjct: 94  NMRFVRCAVQDVGPHLARPADL 115


>gi|116333898|ref|YP_795425.1| methylase of polypeptide chain release factor [Lactobacillus brevis
           ATCC 367]
 gi|116099245|gb|ABJ64394.1| Methylase of polypeptide chain release factor [Lactobacillus brevis
           ATCC 367]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 26/121 (21%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEI 239
            Q              ++EWVL   +     ++++  G+G  ++ L +      V A +I
Sbjct: 85  FQVTPATLIPRPETEELVEWVLQVVRQPAAKVIDVGTGSGAIAVTLKKERPMWLVTATDI 144

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  ++  A+ N                    Q M    +        +   RF  I  +P
Sbjct: 145 SDAAIAVAQKNAQRL--------------TAQLMWATGDL----LAPVTGQRFDVIVSNP 186

Query: 300 P 300
           P
Sbjct: 187 P 187


>gi|16329504|ref|NP_440232.1| hypothetical protein slr1618 [Synechocystis sp. PCC 6803]
 gi|1651986|dbj|BAA16912.1| slr1618 [Synechocystis sp. PCC 6803]
          Length = 261

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 24/155 (15%)

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
                A  +  +GD LL++ CG+G  + +LA  F  V+ ++ +   +  A+ N     + 
Sbjct: 30  YYQAKACIEHSRGDSLLDMPCGDGTLTSLLAPAFKTVVGLDASSQHLALAKEN-----MP 84

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           + +      +EF    +    F+ +  ++I  +    I V             ++     
Sbjct: 85  SAEFYEGLIEEFETNQK----FDTITMLNILEHVVDPISVL-------QKAASLLSQNGI 133

Query: 318 -ILYISCNPDSLC--RDLSILSTTHT-IERLALFD 348
            ++++   P++L   R L++L  T T  E L+ FD
Sbjct: 134 LLVHV---PNALAVNRRLAVLMGTLTHCEELSPFD 165


>gi|118579301|ref|YP_900551.1| type 12 methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118502011|gb|ABK98493.1| Methyltransferase type 12 [Pelobacter propionicus DSM 2379]
          Length = 204

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            + D ++  CG G  +L L+     +L V+ ++  VE      A    + V+ VR+  ++
Sbjct: 39  REWDAMDFGCGTGLVTLNLSPLLGSMLGVDSSEKMVEQFNAKAAELGCSTVRAVRLDLEQ 98


>gi|290996071|ref|XP_002680606.1| predicted protein [Naegleria gruberi]
 gi|284094227|gb|EFC47862.1| predicted protein [Naegleria gruberi]
          Length = 357

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 23/201 (11%)

Query: 91  MATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECA----IRLRDALHARK 146
              +    +L   +     +TS  +Q  V  I H  + D   +        + D     K
Sbjct: 45  YDHLSSTEVLSKIIPNGLEITSSFEQ--VGHIAHLNIPDEVAQYRYLIGQVILDKNPKIK 102

Query: 147 YQIQLIGRAN------KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP--NAGINVHM 198
             +  +G  +      K ++    D  +  L   G T  +   E        N+ +    
Sbjct: 103 TVVNKMGMIDSVFREFKMELLCGEDDFNVTLKENGITFKFNYRE-----VYWNSRLGTEH 157

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVN 257
               L         + ++  G G F++  A+  + +V A ++   S E  + N + N V 
Sbjct: 158 TR--LLKYFDKSQSVCDMMAGVGPFAVPAAKKVECKVYANDLNPKSYEYMKINASVNKVE 215

Query: 258 -NVKIVRMSSKEFTQAMRRER 277
            N++   M  +EF + M  +R
Sbjct: 216 GNMECFNMDGREFIKYMVNDR 236


>gi|255597931|ref|XP_002536886.1| conserved hypothetical protein [Ricinus communis]
 gi|223518211|gb|EEF25497.1| conserved hypothetical protein [Ricinus communis]
          Length = 430

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VK 260
            + A       +LEL  G G  S   A H  +V  VE     V  +R  +A N   + V+
Sbjct: 167 AIDAVVFKGARVLELGGGTGVLSCFAAAHASKVYCVEFNPDMVAESRRLLAMNAQGHKVE 226

Query: 261 IVRMSSKEFTQ 271
           +V   + E+  
Sbjct: 227 VVHADAFEYLP 237


>gi|119897054|ref|YP_932267.1| putative methylase [Azoarcus sp. BH72]
 gi|119669467|emb|CAL93380.1| putative methylase [Azoarcus sp. BH72]
          Length = 173

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 18/108 (16%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIA 252
           +   +  W+     G+    L+L+ G G      A      V  VE    +++A      
Sbjct: 25  VRETLFNWLGQRLDGL--RCLDLFAGTGILGFEAASRGAEAVTLVEQNPRALDALHKAAI 82

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               + V+IVR  + +F Q                 + RF  +F+DPP
Sbjct: 83  TLQASQVEIVRGDAVKFLQ---------------NTTARFDVVFLDPP 115


>gi|115375811|ref|ZP_01463063.1| methyltransferase, HemK family [Stigmatella aurantiaca DW4/3-1]
 gi|310822928|ref|YP_003955286.1| hypothetical protein STAUR_5696 [Stigmatella aurantiaca DW4/3-1]
 gi|115367199|gb|EAU66182.1| methyltransferase, HemK family [Stigmatella aurantiaca DW4/3-1]
 gi|309396000|gb|ADO73459.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 292

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 63/181 (34%), Gaps = 25/181 (13%)

Query: 139 RDALHARKYQIQLIGRANKTKICLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVH 197
           ++ L A +  I+       T+     +++ +    V  R LI R                
Sbjct: 55  KEELAAYRALIERRMAGEPTQYLTGAKEFYNRPFKVDARVLIPRPE-----------TEL 103

Query: 198 MLEWVLAA-TKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAAN 254
           ++E  L A  K      L++  G+G  ++ LA  R    VLA +++  +   AR N    
Sbjct: 104 LVEAALRALPKDAPSHALDVCAGSGCIAISLAAERPQTSVLATDLSPGACALARENAETL 163

Query: 255 HV-NNVKIVRMSSKEFTQAMRREREF---------NRLKDIDIHSYRFKTIFVDPPRSGL 304
            V + V  ++        A  R               +  + +   R   + +D  R GL
Sbjct: 164 GVSSRVTFLQGDLFAPVPADARFALVVSNPPYIASGEIPGLSVEVRREPHLALDGGRDGL 223

Query: 305 D 305
           D
Sbjct: 224 D 224


>gi|108756896|ref|YP_628950.1| hypothetical protein MXAN_0682 [Myxococcus xanthus DK 1622]
 gi|108460776|gb|ABF85961.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 204

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L     I G++L++ CG    +L LA     V  V++ +P++  AR   +   ++ V + 
Sbjct: 37  LWEAGAISGEVLDVGCGFAENALFLAAKGLPVCGVDMMEPAILRARETASLRGLD-VDLR 95

Query: 263 RMSSKEFTQAMRR 275
             ++ E     RR
Sbjct: 96  VGNALELATLGRR 108


>gi|50427553|ref|XP_462389.1| DEHA2G19470p [Debaryomyces hansenii CBS767]
 gi|49658059|emb|CAG90896.1| DEHA2G19470p [Debaryomyces hansenii]
          Length = 267

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 23/121 (19%)

Query: 209 IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
               +L++ CG G  +  L  +     V+ VE  K  +E A    A N + NVK    S 
Sbjct: 41  PTDKILDVGCGPGTITCDLGTYVPQGSVIGVEPTKEIIEEASSKSAENGIKNVKFEVASV 100

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL----YIS 322
                      +     D     +  + I     R       V  ++    +     Y+ 
Sbjct: 101 ----------YKLPYKDDTFDIVHSHQVIIHLKDR-------VDAIKEMKRVTKPNGYVC 143

Query: 323 C 323
           C
Sbjct: 144 C 144


>gi|115533050|ref|NP_001041045.1| COenzyme Q (ubiquinone) biosynthesis family member (coq-3)
           [Caenorhabditis elegans]
 gi|3881187|emb|CAB16512.1| C. elegans protein Y57G11C.11a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 268

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 10/118 (8%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN-----IAA 253
           ++ V  + +     L+++  G G  S+ LAR    V  ++  K +VEAA  +     +  
Sbjct: 65  VDNVRKSDQKAPPRLVDVGSGGGLLSIPLARSGFDVTGIDATKQAVEAANQSLTAKPLQI 124

Query: 254 NHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
             +   ++    S ++F Q    +  +    D  + S   + +   P   G       
Sbjct: 125 AGISKRLRFEHTSVEDFCQKPHNKSAY----DAVVASEIVEHVADLPGFIGCLAELAR 178


>gi|315657281|ref|ZP_07910163.1| HemK family modification methylase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491753|gb|EFU81362.1| HemK family modification methylase [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 290

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 194 INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVL--AVEIAKPSVEAARYN 250
           +    ++       +G+   +L+L CG+G   L +A    + +   V++++ +VE    N
Sbjct: 101 VAQGAIDAAADWVRQGVAPRVLDLGCGSGALGLSIASEVHQSVLTCVDVSEAAVELTAEN 160

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                V   +++   + +  Q +R       +        +F  I  +PP
Sbjct: 161 ARFTGVA-ARVLLTDATD-PQTLRNALVQAEIPP------QFHVIATNPP 202


>gi|302037529|ref|YP_003797851.1| hypothetical protein NIDE2210 [Candidatus Nitrospira defluvii]
 gi|300605593|emb|CBK41926.1| protein of unknown function, putative Methyltransferase [Candidatus
           Nitrospira defluvii]
          Length = 408

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +A   G    +L++ CG G  +   A+      ++ ++ +  SV+ AR       + NV+
Sbjct: 95  VAGHLGDASTILDVGCGIGILTTFYAKRCPASTIVGIDRSPASVDLARQLAQELGLTNVR 154

Query: 261 IVRMS 265
                
Sbjct: 155 FECRD 159


>gi|291444170|ref|ZP_06583560.1| methytransferase [Streptomyces roseosporus NRRL 15998]
 gi|291347117|gb|EFE74021.1| methytransferase [Streptomyces roseosporus NRRL 15998]
          Length = 266

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVK 260
            AA    +  +++L CG+G   + LA   DRV   A ++   +V  AR N+        +
Sbjct: 91  AAALAPRRAVVVDLCCGSGALGVALATALDRVDLHACDVEPAAVRCARRNVGDLG----E 146

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           +      +   A  R R    L ++         +     R
Sbjct: 147 VYEGDLFDPLPARLRGRVDVLLANVPYVPTADVELLPAEAR 187


>gi|302383630|ref|YP_003819453.1| SAM dependent methyltransferase [Brevundimonas subvibrioides ATCC
           15264]
 gi|302194258|gb|ADL01830.1| SAM dependent methyltransferase [Brevundimonas subvibrioides ATCC
           15264]
          Length = 300

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 168 DERLTVAGRTLIY--RQIEN---SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGN 222
            +   +A R + +  R       +F  P    N   L+  + A       +L L+   G 
Sbjct: 83  IDTFPLAWRDVRFTGRFTPFRHLAFF-PEQAANWEWLDARVRARGSNPPKILNLFGYTGV 141

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            SL  A     V  V+ +K SV  AR N   + +++   +R   ++  + + RE      
Sbjct: 142 ASLACAAAGAEVTHVDASKKSVAWARENAELSGLSD-HPIRWIVEDARKWVAREVR---- 196

Query: 283 KDIDIHSYRFKTIFVDPPRSGLDD 306
                   R+  I +DPP+ G   
Sbjct: 197 -----RGSRYDGIILDPPKYGRGP 215


>gi|262282282|ref|ZP_06060050.1| protoporphyrinogen oxidase [Streptococcus sp. 2_1_36FAA]
 gi|262261573|gb|EEY80271.1| protoporphyrinogen oxidase [Streptococcus sp. 2_1_36FAA]
          Length = 276

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 37/192 (19%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E +   R+ L   K   QL+       I    D+    L V  R LI R           
Sbjct: 46  EVSQEEREELKVIKK--QLLAHKPAQYIIGSSDFHGLNLKVDERVLIPRPE--------- 94

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYN 250
                ++E +L+        +L++  G+G  +L LA  R   ++ A ++++ ++  AR N
Sbjct: 95  --TEELVELILSENPESSVSVLDIGTGSGAIALALANSRPDWQITASDLSEDALSLAREN 152

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDA 307
             +  ++ +  V+    +  Q                    F  I  +PP    +  D+ 
Sbjct: 153 ARSCGLS-LTFVQSDCLDAIQG------------------NFDIIVSNPPYISEADKDEV 193

Query: 308 TVGMVQAYPHIL 319
            + ++ + PH+ 
Sbjct: 194 GLNVLTSEPHMA 205


>gi|242398459|ref|YP_002993883.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           sibiricus MM 739]
 gi|242264852|gb|ACS89534.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           sibiricus MM 739]
          Length = 338

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 3/114 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           L   +      + ++L+ + G G   +       +V  V++ K  V+ A+ N+    + N
Sbjct: 178 LARAMINLARAKKEVLDPFMGTGGILIEAGLLGLKVYGVDLRKDMVDGAKQNLEHYGIKN 237

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
             + +  + +  +    +     + D     Y          R  L +  +  +
Sbjct: 238 YVLKKGDATKLGKLFPDKEFEAIVTDP---PYGTSATLGGKVREELYEKALESI 288


>gi|302876210|ref|YP_003844843.1| transcriptional regulator, MerR family [Clostridium cellulovorans
           743B]
 gi|307686942|ref|ZP_07629388.1| transcriptional regulator, MerR family protein [Clostridium
           cellulovorans 743B]
 gi|302579067|gb|ADL53079.1| transcriptional regulator, MerR family [Clostridium cellulovorans
           743B]
          Length = 341

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 13/149 (8%)

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD--ERLTVAGRTLIY- 180
           H++L +  ++     R+ L++   ++  +   NK    +D ++ D  E         IY 
Sbjct: 76  HKVL-ECQQQLLSIKRNRLNSLINKLDNMINDNK---LIDFNFFDNSETEWELIWDEIYH 131

Query: 181 RQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +Q E       + +   ++E            +L+L CG G  SL LA+    V A +I+
Sbjct: 132 KQGE-----VQSEVLKTVMEAAEYFKNHDMKKVLDLGCGMGRHSLYLAKQGFCVTACDIS 186

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  +E  R          +  V    +E 
Sbjct: 187 EKGLEVTRRKAKKVGFE-IDTVCCDMREL 214


>gi|197335425|ref|YP_002156317.1| methyltransferase [Vibrio fischeri MJ11]
 gi|224493289|sp|B5FEQ2|RLMI_VIBFM RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|197316915|gb|ACH66362.1| methyltransferase [Vibrio fischeri MJ11]
          Length = 396

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 12/117 (10%)

Query: 204 AATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A        +L  +   G F L  L      V+  ++++ +++ A+YN   N  +     
Sbjct: 215 ACKYVKDKSVLNCFSYTGGFGLYALKGGAKHVINADVSQLALDTAKYNAEINKFD----- 269

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
            +S  EF  A      F  L++   +  +F  + +DPP+         G  + Y  I
Sbjct: 270 -LSKAEFLNA----DVFKLLREYRDNGTKFDVVIMDPPKFAESKNQLTGACRGYKDI 321


>gi|159482316|ref|XP_001699217.1| tRNA-(N1G37) methyltransferase [Chlamydomonas reinhardtii]
 gi|158273064|gb|EDO98857.1| tRNA-(N1G37) methyltransferase [Chlamydomonas reinhardtii]
          Length = 400

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 5/116 (4%)

Query: 186 SFTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            F+Q   N+ +    L  V    +G    L+++  G G F++  A+    V A ++   S
Sbjct: 194 DFSQVYWNSRLESEHLRLVGTMERGQV--LVDMMAGIGPFAVPAAQKGLTVYANDLNPRS 251

Query: 244 VEAARYNIAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
                 N+  N + + V++  M  + F + +   +     +++   +     + V 
Sbjct: 252 THYLAVNVRLNRLGDGVRVFNMDGRAFLRLLPARQAAAHQREVQGGANVTAHMMVM 307


>gi|21232758|ref|NP_638675.1| methyltransferase in menaquinone/biotin biosynthesis [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66767168|ref|YP_241930.1| methyltransferase in menaquinone/biotin biosynthesis [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|21114575|gb|AAM42599.1| methyltransferase in menaquinone/biotin biosynthesis [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572500|gb|AAY47910.1| methyltransferase in menaquinone/biotin biosynthesis [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 249

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                   E          G LL+L CG G+ S  LA   D V+A +++   +E      
Sbjct: 22  HAQGAEFAELRAGLAGHRNGRLLDLGCGAGHVSFQLAPLMDEVVAYDLSADMLEVVAATA 81

Query: 252 AANHVNNVKIVRMSSKEF 269
           A   +  ++ ++  ++  
Sbjct: 82  ADRGLTQMRTLQGVAERL 99


>gi|134296609|ref|YP_001120344.1| type 11 methyltransferase [Burkholderia vietnamiensis G4]
 gi|134139766|gb|ABO55509.1| Methyltransferase type 11 [Burkholderia vietnamiensis G4]
          Length = 250

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L CG G+ S  +A H   V+A ++A P +           + NV+  +  ++  
Sbjct: 45  VLDLGCGAGHASFAVAPHVRDVVAYDLAAPMLATVDAAARERGLANVRTQQGPAERL 101


>gi|322703369|gb|EFY94979.1| ubiE/COQ5 methyltransferase, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 273

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           L         +L++ CG G  ++ LA +    RV  +E A   +E AR   A+  V+N+ 
Sbjct: 34  LLPHIKPDMTILDIGCGPGTITVDLAGYVPEGRVTGLERAATVLEQARALAASRAVDNID 93

Query: 261 IVRMSSKEF 269
            V   +   
Sbjct: 94  FVEGDANAL 102


>gi|315654796|ref|ZP_07907701.1| HemK family modification methylase [Mobiluncus curtisii ATCC 51333]
 gi|315490757|gb|EFU80377.1| HemK family modification methylase [Mobiluncus curtisii ATCC 51333]
          Length = 290

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 194 INVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVL--AVEIAKPSVEAARYN 250
           +    ++       +G+   +L+L CG+G   L +A    + +   V++++ +VE    N
Sbjct: 101 VAQGAIDAAADWVRQGVAPRVLDLGCGSGALGLSIASEVPQSVLTCVDVSEAAVELTAEN 160

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                V   +++   + +  Q +R       +        +F  I  +PP
Sbjct: 161 ARFTGVA-TRVLLADATD-PQTLRNALVRAEIPP------QFHVIATNPP 202


>gi|307106298|gb|EFN54544.1| hypothetical protein CHLNCDRAFT_58183 [Chlorella variabilis]
          Length = 292

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 11/134 (8%)

Query: 130 AWRECAIRLRDALHARKYQIQLIGRAN-----KTKICLDRDYVDERLTVAGRTLIYRQIE 184
           +  E    L          ++           K ++  DR Y+             R  E
Sbjct: 3   SQEEQQEILVKRQRTSNAWLRSWAWKREHRPDKARVRFDRPYMHPFRGEQLTIHQARFKE 62

Query: 185 NSFTQP---NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
             F      ++ +    LE   A         L+L  G G   +VLA+   +V A ++  
Sbjct: 63  QGFASTVWDSSIVLAKYLEKNAARYAA--ARCLDLSAGCGLPGIVLAKLGAKVTATDLGP 120

Query: 242 PSVEAARYNIAANH 255
             V     N  AN 
Sbjct: 121 NLV-LLEKNAKANG 133


>gi|296270744|ref|YP_003653376.1| methyltransferase [Thermobispora bispora DSM 43833]
 gi|296093531|gb|ADG89483.1| methyltransferase [Thermobispora bispora DSM 43833]
          Length = 189

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 15/104 (14%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L  L+R  + VL VE    +  A R NI A  +    + +   +   
Sbjct: 48  RVLDLYAGSGAVGLEALSRGAEHVLLVEADPRAARAIRANIEAVGLPGAVLRQEKVERLV 107

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           +    E               +  ++ DPP S  D+  + ++ A
Sbjct: 108 RRRCAEP--------------YGFVYADPPYSLPDEQVIEVLIA 137


>gi|261868733|ref|YP_003256655.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261414065|gb|ACX83436.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 294

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L         +++  CG+G  ++  L       + ++I   ++ A+R N   N V 
Sbjct: 149 LEW-LDGLGLQGKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVA 207

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +   + +S +  +         N L       Y   +  V P
Sbjct: 208 DRLQLCLSDERPSDLNADVVVANILAGPLKELYPVISQLVKP 249


>gi|239940731|ref|ZP_04692668.1| putative methylase [Streptomyces roseosporus NRRL 15998]
 gi|239987209|ref|ZP_04707873.1| putative methylase [Streptomyces roseosporus NRRL 11379]
          Length = 263

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVK 260
            AA    +  +++L CG+G   + LA   DRV   A ++   +V  AR N+        +
Sbjct: 88  AAALAPRRAVVVDLCCGSGALGVALATALDRVDLHACDVEPAAVRCARRNVGDLG----E 143

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
           +      +   A  R R    L ++         +     R
Sbjct: 144 VYEGDLFDPLPARLRGRVDVLLANVPYVPTADVELLPAEAR 184


>gi|260907228|ref|ZP_05915550.1| putative methyltransferase [Brevibacterium linens BL2]
          Length = 204

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR 229
            L +AGR +    +  +F+     +   +L  +        GD+L+L CG G  +L  A 
Sbjct: 20  TLDLAGREVTVETVSGTFSPTRLDLGTAVL--LRHLPVPEPGDILDLGCGWGPIALDAAL 77

Query: 230 HFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
                    RV A+++   S+E    N   + +  ++ V   
Sbjct: 78  SAKDAEVDVRVWALDVNSRSLETTAKNAQRHGLKTIRPVTAD 119


>gi|78062971|ref|YP_372879.1| DNA methylase N-4/N-6 [Burkholderia sp. 383]
 gi|77970856|gb|ABB12235.1| DNA methylase N-4/N-6 [Burkholderia sp. 383]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--SVEAARYNIAAN 254
            ++E ++ A+    G +L+ + G+G  ++  AR     +  EI +   ++   R N  A 
Sbjct: 220 EIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYCAIAHERVNALAA 279


>gi|330444964|ref|ZP_08308618.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328493082|dbj|GAA03115.1| ribosomal protein L11 methyltransferase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 294

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           LEW L         +++  CG+G  ++  L     +V+ ++I   ++ A+R N   N V
Sbjct: 150 LEW-LDGQDLTGKTIIDFGCGSGILAIAALKLGAAKVIGIDIDPQAILASRDNAERNGV 207


>gi|299533092|ref|ZP_07046477.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni
           S44]
 gi|298718869|gb|EFI59841.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni
           S44]
          Length = 296

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+    KG  G  L+  CG+G  ++  A+     V AV+I   +VE+  YN +ANHV 
Sbjct: 154 LRWIARQPKGTLGRTLDYGCGSGILAIGAAKFGATDVDAVDIDPAAVESTNYNTSANHVE 213


>gi|251793926|ref|YP_003008658.1| methyltransferase domain-containing protein [Aggregatibacter
           aphrophilus NJ8700]
 gi|247535325|gb|ACS98571.1| methyltransferase domain family [Aggregatibacter aphrophilus
           NJ8700]
          Length = 266

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 17/130 (13%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +  N  +LE            +L++ CG G F++ LA+   +V A++ +   ++      
Sbjct: 45  SRYNQQLLET---MQVQPDETVLDIGCGPGTFAIPLAQQGSQVYALDYSTGMLDVLAEYK 101

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               + N+ ++R S            ++N +  +D+      T+  D     LDD    +
Sbjct: 102 QKLQLANLNLIRRS---------WAEDWNDVPQVDVILASRSTLVDD-----LDDMIDKL 147

Query: 312 VQAYPHILYI 321
                  +Y+
Sbjct: 148 CTKAKKRVYL 157


>gi|227536293|ref|ZP_03966342.1| methyltransferase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243900|gb|EEI93915.1| methyltransferase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 394

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 11/109 (10%)

Query: 203 LAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L A       +L+ +C +G F+L  + +    V AV+ +  ++E    N+  N       
Sbjct: 212 LTAQYVKDKRVLDCFCYSGGFTLNSIQQGAAAVTAVDSSALAIETLERNMVVNGFE-TSA 270

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            R    +  + +R   E            +F  + +DPP+     +++ 
Sbjct: 271 HRFILSDVNKQLRTFIE---------EEAKFDVVILDPPKYAPSRSSLE 310


>gi|168698012|ref|ZP_02730289.1| DNA methyltransferase [Gemmata obscuriglobus UQM 2246]
          Length = 501

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 28/66 (42%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +   V ++E V+  T      +++ YCG+G   +   R     +  + +  ++E  R  +
Sbjct: 245 SQQPVALIERVILRTSNPDDLVIDPYCGSGTSLVAAHRQDRCWIGCDSSPEAIELTRARL 304

Query: 252 AANHVN 257
           +   + 
Sbjct: 305 STAGIA 310


>gi|156937670|ref|YP_001435466.1| protein-L-isoaspartate O-methyltransferase [Ignicoccus hospitalis
           KIN4/I]
 gi|209573190|sp|A8AAV7|PIMT_IGNH4 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|156566654|gb|ABU82059.1| protein-L-isoaspartate O-methyltransferase [Ignicoccus hospitalis
           KIN4/I]
          Length = 211

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 30/163 (18%)

Query: 195 NVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYN 250
             HM+ +++ A +  +GD +LE+  G+G  + V+A        V  +E      E AR  
Sbjct: 60  APHMVAYMVEAAELRRGDKVLEVGTGSGYHAAVMAELVGPEGHVYTIERIPELAERARER 119

Query: 251 IAANHVNNVKIVRMSSKEFTQ------AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           + A   NNV ++     +          +       R+ +  +   +   I V P     
Sbjct: 120 LKALGYNNVTVLVGDGSKGYPPAAPYDKIIVTAAAKRVPEALLKQLKVGGIMVIPVEEEP 179

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
               +  +   P                      + I++L   
Sbjct: 180 GYQVLYKIIKTP--------------------EGYVIKKLLPV 202


>gi|146071668|ref|XP_001463170.1| hypothetical protein [Leishmania infantum]
 gi|134067253|emb|CAM65521.1| putative arginine N-methyltransferase, type III [Leishmania
           infantum JPCM5]
 gi|322496603|emb|CBZ31673.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 438

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
           N      +       +  +LE+  G+G  S++ A+ +   V+AVE +      AR NIA 
Sbjct: 111 NEFYYNMLKKHIVPGESGVLEIGAGSGLLSMMAAKLNAKWVVAVEGSSEMASLARSNIAT 170

Query: 254 NHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           N + + VK++ M S E T      R+      I +       +  +     + DA   ++
Sbjct: 171 NGLQDKVKVLNMLSTELTP-----RDLPEPPSILVSEIFGTLLLGESALDYIADARQRLL 225

Query: 313 QAYPHIL 319
                IL
Sbjct: 226 PKTAKIL 232


>gi|116811589|emb|CAL25961.1| CG9531 [Drosophila melanogaster]
          Length = 323

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 114 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 172

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V   + E         E   L D  +   ++  
Sbjct: 173 TAIERSKAATVLAAENAKMLGLLNRFEVHNHTME---------EDKYLPDA-LKDKKYDL 222

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 223 IISNPP 228


>gi|157867109|ref|XP_001682109.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68125561|emb|CAJ03475.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 686

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 209 IQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMS 265
             GD+L ++  G G F++  A+   +V A ++   + +  + N   NH+  N + +  M 
Sbjct: 436 RPGDVLFDVMAGVGPFAVPAAKKGVQVFANDLNPVAAQYMKVNAELNHLPANALHVFNMD 495

Query: 266 SKEFT 270
            ++F 
Sbjct: 496 GRDFL 500


>gi|67459172|ref|YP_246796.1| hypothetical protein RF_0780 [Rickettsia felis URRWXCal2]
 gi|67004705|gb|AAY61631.1| unknown [Rickettsia felis URRWXCal2]
          Length = 226

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           + ++ CGNG  + ++A       +V AV+I++  ++ A+  I      NV  +   
Sbjct: 51  IWDIGCGNGTMTEIMASRVGDSGQVYAVDISEQQIQIAKQRIKNAGFKNVTFIASD 106


>gi|45357886|ref|NP_987443.1| hypothetical protein MMP0323 [Methanococcus maripaludis S2]
 gi|45047446|emb|CAF29879.1| hypothetical methyltransferase protein [Methanococcus maripaludis
           S2]
          Length = 342

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 47/110 (42%), Gaps = 21/110 (19%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +++++CG G +S+   ++ +++ +++I    +E  + NI  N++ N              
Sbjct: 204 VVDMFCGVGPYSIAC-KNAEKIYSIDINPDGIELLKQNIVLNNLEN-------------- 248

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMVQAYPHILY 320
               +    L+D+     +   + ++ P+      D  + +V+    I Y
Sbjct: 249 ----KIVPILEDVRNVDVKGTRVIMNLPKYAHQFVDKALEIVEDGGTIHY 294


>gi|254255015|ref|ZP_04948332.1| SAM-dependent methyltransferase [Burkholderia dolosa AUO158]
 gi|124899660|gb|EAY71503.1| SAM-dependent methyltransferase [Burkholderia dolosa AUO158]
          Length = 253

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  +L+L CG G F+  LA     V+A++ A   ++ AR        + V          
Sbjct: 43  QQRILDLGCGTGTFARRLAAAGHHVVAIDPAPAMIDHARR---QPGADAVHWRAGD---- 95

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVD 298
              +R  R   R   + +  + F+ +  D
Sbjct: 96  ---LRSVRSDERFDAVVMTGHAFQCLLTD 121


>gi|23009790|ref|ZP_00050707.1| COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
           methylase [Magnetospirillum magnetotacticum MS-1]
          Length = 260

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AAN 254
             +L+W+     G    LL+  CG G  ++  AR    V+A++++   +  AR  + A +
Sbjct: 49  ATLLDWMPEDLTG--KRLLDAGCGTGALAVEAARRGAEVVAIDVSPTLIGLARERLPAIS 106

Query: 255 HVNNVKIVRMSSKE 268
              +V+       +
Sbjct: 107 GPGSVEFRVGDMLD 120


>gi|333026263|ref|ZP_08454327.1| putative methyltransferase [Streptomyces sp. Tu6071]
 gi|332746115|gb|EGJ76556.1| putative methyltransferase [Streptomyces sp. Tu6071]
          Length = 236

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N  ++  V        G  L+L CG G   + LAR    V   +IA+ ++  AR + A  
Sbjct: 48  NTALVREVAEL---PPGRALDLGCGEGADVVWLARQGWTVTGTDIAETALVRARAHAAEA 104

Query: 255 HVNNVKIV 262
            V +    
Sbjct: 105 GVADRTRF 112


>gi|302556027|ref|ZP_07308369.1| methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302473645|gb|EFL36738.1| methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 217

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 18/106 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              +   +          +L++  G G  +L  AR    V AV++++ +V AAR N A  
Sbjct: 16  TELLAGALFDEPLPTGAAVLDVGTGTGALALEAARRGFDVTAVDVSRRAVWAARLNAARA 75

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +  V+I   +  +                  +    F  I  +PP
Sbjct: 76  GLL-VRIRHGNLFD-----------------PVLGESFDLILANPP 103


>gi|152969505|ref|YP_001334614.1| putative metallothionein SmtA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893977|ref|YP_002918711.1| putative metallothionein SmtA [Klebsiella pneumoniae NTUH-K2044]
 gi|150954354|gb|ABR76384.1| S-adenosylmethionine-dependent methyltransferase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238546293|dbj|BAH62644.1| S-adenosylmethionine-dependent methyltransferase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 270

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VN 257
           LE +LA        +L+   G G  ++ +A+    V   +++   V  AR   A    ++
Sbjct: 38  LEPLLAQLGPGPLRVLDAGGGEGQTAIKVAQLGHHVTLCDLSAEMVARARQAAADKGVID 97

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N+  V+ ++++  Q +    + 
Sbjct: 98  NMHFVQCAAQDIAQHLESPVDL 119


>gi|149019617|ref|ZP_01834936.1| HemK protein [Streptococcus pneumoniae SP23-BS72]
 gi|147930992|gb|EDK81972.1| HemK protein [Streptococcus pneumoniae SP23-BS72]
          Length = 279

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 32/153 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+    L V  R LI R                ++E +L      
Sbjct: 62  QLAAHKPAQYIIGQADFYGMHLKVDERVLIPRPE-----------TEELVELILTENLET 110

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A ++++ +++ A  N       N++I    S 
Sbjct: 111 NLSVLDIGTGSGAIALALAKNRPDWSVTAADVSQEALDLASENAKN---QNLQIFFKKSD 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            FT+                 S ++  I  +PP
Sbjct: 168 CFTE----------------ISEKYDIIVSNPP 184


>gi|83816659|ref|YP_446173.1| hemK protein [Salinibacter ruber DSM 13855]
 gi|294508099|ref|YP_003572157.1| protein methyltransferase [Salinibacter ruber M8]
 gi|83758053|gb|ABC46166.1| hemK protein [Salinibacter ruber DSM 13855]
 gi|294344427|emb|CBH25205.1| Protein methyltransferase [Salinibacter ruber M8]
          Length = 303

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 8/116 (6%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              +++  L   + +    +L+   G+G  +L L   R    V A +++  ++  AR N 
Sbjct: 112 TETVVDRALTCIEEVSRPRVLDAGTGSGCIALALKHERPDAEVHACDVSTDALAVARANA 171

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREF-----NRLKDIDIHSYRFKTIFVDPPRS 302
               ++          E   A  R+ +        + D +  S        DP RS
Sbjct: 172 QDLGLDVRFFEGDLCAEVPAATPRDVDLLVSNPPYIPDAEAESLPPVVREYDPDRS 227


>gi|314955550|gb|EFS99953.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL027PA1]
          Length = 291

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 79  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGAFPSVIDLCTGTGAIALAV 135

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+  +    V+++   +       RR          
Sbjct: 136 ASEVPGSRVSAVEVDDAALTWTRRNLCDSG---VEVLAGDALRVPDDSRR---------- 182

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 183 ------FDVVVTNPP 191


>gi|290962666|ref|YP_003493848.1| methylase [Streptomyces scabiei 87.22]
 gi|260652192|emb|CBG75324.1| putative methylase [Streptomyces scabiei 87.22]
          Length = 258

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIA 252
              ++E  LAA  G    +++L CG+G     LA       + A +I   +V  AR NIA
Sbjct: 78  TEFLVERALAAVPGAS-VVVDLCCGSGAVGAALAVRLVGAELHAADIDPVAVRCARRNIA 136


>gi|225867309|ref|YP_002752687.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus 03BB102]
 gi|225789080|gb|ACO29297.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus 03BB102]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|225155291|ref|ZP_03723785.1| ribosomal L11 methyltransferase [Opitutaceae bacterium TAV2]
 gi|224804046|gb|EEG22275.1| ribosomal L11 methyltransferase [Opitutaceae bacterium TAV2]
          Length = 308

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAAN 254
             ++ W  A     +  +++  CG+G  +L  AR  F  V A +    +V  +  N   N
Sbjct: 149 ERLVPWAEAHGVAGR-RVIDAGCGSGILALSAARLGFAEVDAFDNDPEAVRVSIENATLN 207

Query: 255 HV 256
            +
Sbjct: 208 GL 209


>gi|205359883|ref|ZP_02833055.2| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205342251|gb|EDZ29015.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320088946|emb|CBY98703.1| Phosphoethanolamine N-methyltransferase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|198284673|ref|YP_002220994.1| type 11 methyltransferase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198249194|gb|ACH84787.1| Methyltransferase type 11 [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 250

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           CG G   + LAR  + V  V+++   +E AR N AA  V NV
Sbjct: 73  CGVGRLLIPLARIAEEVTGVDVSDAMLEEARKNCAAQSVRNV 114


>gi|171320482|ref|ZP_02909513.1| Methyltransferase type 11 [Burkholderia ambifaria MEX-5]
 gi|171094293|gb|EDT39369.1| Methyltransferase type 11 [Burkholderia ambifaria MEX-5]
          Length = 287

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 15/114 (13%)

Query: 212 DLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L++ CG G  SL LA       +VL V+I++P +  AR     +     ++   SS E
Sbjct: 49  RVLDVGCGAGTSSLALAARVGAGGQVLGVDISEPLIGRARALAPHDTPALFRVADASSAE 108

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
             +              DI   RF  +F D P +G        ++    + ++ 
Sbjct: 109 LPEG-----------AFDILFSRFGVMFFDDP-TGAFAHMRRALRPGGRVAFVC 150


>gi|313764217|gb|EFS35581.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL013PA1]
 gi|313816310|gb|EFS54024.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL059PA1]
 gi|313827396|gb|EFS65110.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL063PA2]
 gi|314915695|gb|EFS79526.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL005PA4]
 gi|314917936|gb|EFS81767.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL050PA1]
 gi|314920319|gb|EFS84150.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL050PA3]
 gi|314931539|gb|EFS95370.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL067PA1]
 gi|314957924|gb|EFT02027.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL002PA1]
 gi|314967572|gb|EFT11671.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL037PA1]
 gi|315098770|gb|EFT70746.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL059PA2]
 gi|315101460|gb|EFT73436.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL046PA1]
 gi|315108752|gb|EFT80728.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL030PA2]
 gi|327329873|gb|EGE71627.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL097PA1]
 gi|327450546|gb|EGE97200.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL087PA3]
 gi|327454115|gb|EGF00770.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL083PA2]
 gi|328753198|gb|EGF66814.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL025PA2]
 gi|328753963|gb|EGF67579.1| protein-(glutamine-N5) methyltransferase [Propionibacterium acnes
           HL087PA1]
          Length = 291

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 30/135 (22%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHML------EWVLAATKGIQGDLLELYCGNGNFSLVL 227
             R L        F      +   ++      E       G    +++L  G G  +L +
Sbjct: 79  WFRGLRLEVGPGVFI---PRLETELVAEQSIQEARRLVMSGAFPSVIDLCTGTGAIALAV 135

Query: 228 ARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
           A      RV AVE+   ++   R N+  +    V+++   +       RR          
Sbjct: 136 ASEVPGSRVSAVEVDDAALTWTRRNLCDSG---VEVLAGDALRVPDDSRR---------- 182

Query: 286 DIHSYRFKTIFVDPP 300
                 F  +  +PP
Sbjct: 183 ------FDVVVTNPP 191


>gi|312214813|emb|CBX94767.1| similar to methyltransferase UbiE [Leptosphaeria maculans]
          Length = 274

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +L         +L++ CG G  S+ LA       V A++ +   +E AR +     V NV
Sbjct: 29  LLPHLHDPSATILDVGCGPGTISVDLASRVPQGFVYAIDPSADVIEKARKHAEDIGVKNV 88

Query: 260 KIVRMS 265
           +     
Sbjct: 89  RFEVGD 94


>gi|284046897|ref|YP_003397237.1| methyltransferase type 11 [Conexibacter woesei DSM 14684]
 gi|283951118|gb|ADB53862.1| Methyltransferase type 11 [Conexibacter woesei DSM 14684]
          Length = 385

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +ML W+ +A       +LE  CG G  +  L     +    +I    +  AR  +A   +
Sbjct: 18  YMLPWIESAVPLAGKTVLEYGCGYGPVACALGTRVGQHYGYDIDPGPLAKARDEVARRGL 77

Query: 257 NNVKIVRMSSKEFTQAMRR 275
           +NV++  +  +    A+  
Sbjct: 78  DNVELRHVPVESILAAVEE 96


>gi|270651497|ref|ZP_06222237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           HK1212]
 gi|270317155|gb|EFA28769.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Haemophilus influenzae
           HK1212]
          Length = 251

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 68/183 (37%), Gaps = 17/183 (9%)

Query: 11  EQQLAEKVDRLRQMMLAFQVPNLQIFRS----EPIHYRMRAEFHIWHDGDDLYHIMFDQQ 66
           E Q   K   L + +   Q      F+     +   YR R    +W +       M  +Q
Sbjct: 68  EMQRKAKESALFKRLSKLQS-EPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIEMGFRQ 126

Query: 67  --TKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
             T + + +         IN L+ ++ A +      + +L  I+ + + +  A++ L Y 
Sbjct: 127 KNTNDLVTVQSCEVAEPAINYLLPKLTALLEKFSAPK-QLGHIELVAADNGVAML-LRYT 184

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + L +  R   ++      A + ++ L  ++++    ++++Y D         +      
Sbjct: 185 KNLAEIDRTLLLKF-----AEQEKLMLFLQSDEG---IEQNYGDSPYYQFSDGIKLPFFC 236

Query: 185 NSF 187
            SF
Sbjct: 237 FSF 239


>gi|222529538|ref|YP_002573420.1| 50S ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|254782825|sp|B9MJY9|PRMA_ANATD RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|222456385|gb|ACM60647.1| ribosomal protein L11 methyltransferase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 304

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN 257
            +        D+L++  G+G  ++  A+ F   RVLAV+I + +V+ A  N   N V 
Sbjct: 161 AIQKYVKPGMDVLDVGTGSGILAIA-AKKFLARRVLAVDIDEVAVKVAEENARLNGVE 217


>gi|167384269|ref|XP_001736879.1| protein arginine N-methyltransferase 1 [Entamoeba dispar SAW760]
 gi|165900587|gb|EDR26883.1| protein arginine N-methyltransferase 1, putative [Entamoeba dispar
           SAW760]
          Length = 332

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAAN 254
            H  E  + A       +L++ CG G  SL  AR     V A+E A    E A   I  N
Sbjct: 38  THTYEKAINACNIKGKIVLDVGCGLGILSLFAARAGAKHVYAIERAAIG-EKAIEVIKNN 96

Query: 255 HVNNV-KIVRMSSKEFT 270
              +V  ++R   ++ T
Sbjct: 97  GFEDVITVIRGRVEDIT 113


>gi|119472533|ref|ZP_01614581.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Alteromonadales bacterium TW-7]
 gi|119444857|gb|EAW26157.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Alteromonadales bacterium TW-7]
          Length = 279

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I   R++    L V   TLI R                ++E  L         +L+L  G
Sbjct: 74  ITGQREFWSLTLEVNATTLIPRPD-----------TETLVEAALGLGISENAKVLDLGTG 122

Query: 220 NGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            G  +L L        + AV+    +V  A  N     ++NV++
Sbjct: 123 TGAIALALGSEMPLWNITAVDKVTDAVTLATRNQQRLGLSNVRV 166


>gi|49476827|ref|YP_039321.1| HemK family modification methylase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49328383|gb|AAT59029.1| modification methylase, HemK family [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKDLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|83319521|ref|YP_424011.1| N-6 adenine-specific DNA methylases, putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
 gi|83283407|gb|ABC01339.1| N-6 adenine-specific DNA methylases, putative [Mycoplasma
           capricolum subsp. capricolum ATCC 27343]
          Length = 220

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 17/98 (17%)

Query: 210 QGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
           +  + +    N    L+L+++   +++ VEI   +VE A  NI  N + + ++IV    K
Sbjct: 21  KKKICDFGTNNAVIPLILSKYTKAKIIGVEIQNKAVEIANENIKLNGLEDQIEIVHADIK 80

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           EF++               +H+  F  +  +PP   +D
Sbjct: 81  EFSK---------------LHNQEFDLVVCNPPFFKMD 103


>gi|30265351|ref|NP_847728.1| HemK family modification methylase [Bacillus anthracis str. Ames]
 gi|47530890|ref|YP_022239.1| HemK family modification methylase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188163|ref|YP_031416.1| HemK family modification methylase [Bacillus anthracis str. Sterne]
 gi|165871296|ref|ZP_02215945.1| modification methylase, HemK family [Bacillus anthracis str. A0488]
 gi|167636691|ref|ZP_02394979.1| modification methylase, HemK family [Bacillus anthracis str. A0442]
 gi|170688140|ref|ZP_02879351.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. A0465]
 gi|170709377|ref|ZP_02899790.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. A0389]
 gi|177651883|ref|ZP_02934466.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. A0174]
 gi|196042385|ref|ZP_03109650.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus NVH0597-99]
 gi|227818091|ref|YP_002818100.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. CDC 684]
 gi|228930336|ref|ZP_04093340.1| Protein hemK [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228936613|ref|ZP_04099407.1| Protein hemK [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229094440|ref|ZP_04225512.1| Protein hemK [Bacillus cereus Rock3-42]
 gi|229602075|ref|YP_002869543.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. A0248]
 gi|254686249|ref|ZP_05150108.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. CNEVA-9066]
 gi|254724244|ref|ZP_05186028.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. A1055]
 gi|254735256|ref|ZP_05192965.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. Western North America USA6153]
 gi|254744459|ref|ZP_05202139.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. Kruger B]
 gi|254755797|ref|ZP_05207829.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. Vollum]
 gi|254762137|ref|ZP_05213983.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. Australia 94]
 gi|301056796|ref|YP_003795007.1| HemK family modification methylase [Bacillus anthracis CI]
 gi|30260029|gb|AAP29214.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. Ames]
 gi|47506038|gb|AAT34714.1| modification methylase, HemK family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182090|gb|AAT57466.1| modification methylase, HemK family [Bacillus anthracis str.
           Sterne]
 gi|164712963|gb|EDR18491.1| modification methylase, HemK family [Bacillus anthracis str. A0488]
 gi|167527891|gb|EDR90713.1| modification methylase, HemK family [Bacillus anthracis str. A0442]
 gi|170125725|gb|EDS94639.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. A0389]
 gi|170667833|gb|EDT18585.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. A0465]
 gi|172082587|gb|EDT67651.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. A0174]
 gi|196026777|gb|EDX65419.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus cereus NVH0597-99]
 gi|227005279|gb|ACP15022.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. CDC 684]
 gi|228688977|gb|EEL42804.1| Protein hemK [Bacillus cereus Rock3-42]
 gi|228823048|gb|EEM68886.1| Protein hemK [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829322|gb|EEM74955.1| Protein hemK [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|229266483|gb|ACQ48120.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Bacillus anthracis str. A0248]
 gi|300378965|gb|ADK07869.1| modification methylase, HemK family [Bacillus cereus biovar
           anthracis str. CI]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|320103783|ref|YP_004179374.1| hypothetical protein Isop_2247 [Isosphaera pallida ATCC 43644]
 gi|319751065|gb|ADV62825.1| hypothetical protein Isop_2247 [Isosphaera pallida ATCC 43644]
          Length = 485

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
              ++     +       +L+L CG G+ +L LA+    ++A++     ++   +N    
Sbjct: 111 ASRLVSAAGGSYGSRPTVILDLCCGVGSDALALAQMGANLVALDRDAGMIQRVTWNARVR 170

Query: 255 HVN-NVKIVRMSSKE 268
            V+  ++ V  ++  
Sbjct: 171 GVDKYLRGVVGNAAH 185


>gi|314981759|gb|EFT25852.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092521|gb|EFT64497.1| methyltransferase small domain protein [Propionibacterium acnes
           HL110PA4]
          Length = 362

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 24/128 (18%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANH 255
           +L+++ A    +  D ++L CGNG     LAR      + A +++  +V++ R    AN 
Sbjct: 209 LLDYLDAIAADVHSDAVDLGCGNGVIYAHLARLLPQATIHATDVSWQAVDSTRLTAQANQ 268

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDDATVGM 311
           +N V                         +D+       +  +PP     +     T+ M
Sbjct: 269 LNIVTHWCDGL------------------VDVPHESVDVVVTNPPFHRGTAQDHAPTLAM 310

Query: 312 VQAYPHIL 319
           +     +L
Sbjct: 311 LADAARVL 318


>gi|309355713|emb|CAP38290.2| CBR-COQ-3 protein [Caenorhabditis briggsae AF16]
          Length = 262

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV------NNVKIV 262
               L+++  G G  S+ LAR    V  ++  K +V+AAR ++ +  +        ++  
Sbjct: 69  TSKRLVDVGSGGGLLSIPLARSGFDVTGIDATKQAVDAARLSLQSAPLQRSRITERLRFE 128

Query: 263 RMSSKEFTQAMRREREFN 280
            MS + F Q    +  F+
Sbjct: 129 HMSVENFCQKPENKSAFD 146


>gi|302342619|ref|YP_003807148.1| methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
 gi|301639232|gb|ADK84554.1| Methyltransferase type 11 [Desulfarculus baarsii DSM 2075]
          Length = 196

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 17/121 (14%)

Query: 214 LELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L+  CG G ++L  AR       V A +I    +E      A + +     VR +  + T
Sbjct: 41  LDAGCGLGEYALEAARIVGPTGMVHAFDITPGCIEDLSRQAAMHGLTQ---VRAAVVDIT 97

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV----GMVQAYPHILYISCNPD 326
           + +        L D  I +    T+   PP +      +     +++    +  I CNP 
Sbjct: 98  RPLP-------LPDESITAGLLGTVLHIPPVAQAMKEVIMEMGRVLRPGGRLGVIECNPH 150

Query: 327 S 327
           S
Sbjct: 151 S 151


>gi|291484992|dbj|BAI86067.1| ribosomal protein L11 methyltransferase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 311

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 168 DERLTVAGRTLIYRQIEN-SF-TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           +E   V    LI       +F T  +      +    L         ++++  G+G  S+
Sbjct: 134 EEYTPVHTDELIIEMDPGMAFGTGTHP--TTVLCIQALERFVQKGDKVIDVGTGSGILSI 191

Query: 226 VLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
             A    + V A ++   +VE+AR N+  N V+++  V
Sbjct: 192 AAAMLKAESVHAYDLDPVAVESARLNLKLNKVSDIAQV 229


>gi|264680219|ref|YP_003280129.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni
           CNB-2]
 gi|262210735|gb|ACY34833.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni
           CNB-2]
          Length = 298

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+    KG  G  L+  CG+G  ++  A+     V AV+I   +VE+  YN +ANHV 
Sbjct: 156 LRWIARQPKGTLGRTLDYGCGSGILAIGAAKFGATDVDAVDIDPAAVESTNYNTSANHVE 215


>gi|255263687|ref|ZP_05343029.1| protein-L-isoaspartate [Thalassiobium sp. R2A62]
 gi|255106022|gb|EET48696.1| protein-L-isoaspartate [Thalassiobium sp. R2A62]
          Length = 216

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 199 LEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L  +L A      D+ L+L CG G  + VLA     V+AVE    + E A+  ++ N V+
Sbjct: 67  LAKILDALALETEDVVLDLGCGLGYSTAVLAHMVHAVVAVEDEGRADE-AQAVLSENGVD 125

Query: 258 NVKIVRMSSKE 268
           N  ++  +  E
Sbjct: 126 NAAVISGALSE 136


>gi|256376931|ref|YP_003100591.1| methyltransferase type 12 [Actinosynnema mirum DSM 43827]
 gi|255921234|gb|ACU36745.1| Methyltransferase type 12 [Actinosynnema mirum DSM 43827]
          Length = 232

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 13/122 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           WV  A     G  L+  CG+G     LA H+D VL V+++ P VE AR   A      V+
Sbjct: 36  WVTDAGVRPGGRALDAGCGSGRRCRELADHYDEVLGVDLSAPLVELAR---ARRPHPRVR 92

Query: 261 IVRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                  +          +      + + D+D    + K++     R G     V  V  
Sbjct: 93  YEVADLADVDGGAEGFDLVFSSTTLHHVPDLDDALRKLKSLV----RPGGCAVLVDNVAD 148

Query: 315 YP 316
            P
Sbjct: 149 RP 150


>gi|297618960|ref|YP_003707065.1| hypothetical protein Mvol_0432 [Methanococcus voltae A3]
 gi|297377937|gb|ADI36092.1| protein of unknown function Met10 [Methanococcus voltae A3]
          Length = 258

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNN-V 259
           +A     +  +++++ G G F++ LA++    ++ A+E+   S      NI  N V N V
Sbjct: 95  IATKSNKEEIVVDMFAGIGYFTIPLAKYSAPKKIYALELNPNSYRHLCKNILLNKVENIV 154

Query: 260 KIVRMSSKEFTQAMRRER 277
             + + +++F + ++ +R
Sbjct: 155 VPLNIDNRDFDETIKADR 172


>gi|154149936|ref|YP_001403554.1| methyltransferase type 11 [Candidatus Methanoregula boonei 6A8]
 gi|153998488|gb|ABS54911.1| Methyltransferase type 11 [Methanoregula boonei 6A8]
          Length = 278

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNN 258
           ++ A  G    +L++ CG+G+ S +LA+       V+ ++   PS+E AR  I    + N
Sbjct: 37  LVDAGIGPGMHVLDVGCGSGDVSHLLAKLVGKEGHVIGIDRDGPSLEIARDRIRKLDLPN 96

Query: 259 VKIVRMSSKEFTQ 271
           +  ++    E + 
Sbjct: 97  ITFIQRDICELSP 109


>gi|169609202|ref|XP_001798020.1| hypothetical protein SNOG_07688 [Phaeosphaeria nodorum SN15]
 gi|111064034|gb|EAT85154.1| hypothetical protein SNOG_07688 [Phaeosphaeria nodorum SN15]
          Length = 306

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 9/115 (7%)

Query: 187 FTQPNAGINVHM---LEWV----LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
           F + N  +   +   L+WV      A    +  LL+  CG G  +     +  + L ++I
Sbjct: 25  FAKVNTQVTEILRSKLDWVGIPFAKADSSNEVKLLDYACGTGLMTRTFGPYVTKTLGIDI 84

Query: 240 AKPSVEAARYNIAANHV--NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
           +   V      I A  +       V     +       E       + D+ +  F
Sbjct: 85  SPNMVSTYNTRIEAAGLSKETAHAVHGDLFDKANPSPAELSGPEWTNFDLAAVGF 139


>gi|52140234|ref|YP_086597.1| HemK family modification methylase [Bacillus cereus E33L]
 gi|51973703|gb|AAU15253.1| modification methylase, HemK family [Bacillus cereus E33L]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|16126353|ref|NP_420917.1| hypothetical protein CC_2114 [Caulobacter crescentus CB15]
 gi|221235136|ref|YP_002517572.1| methyltransferase [Caulobacter crescentus NA1000]
 gi|13423601|gb|AAK24085.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220964308|gb|ACL95664.1| methyltransferase [Caulobacter crescentus NA1000]
          Length = 247

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 5/116 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL--AVEIAKPSVEAARY 249
            G++  +L     A  G    +LE  CG G   L  A      +   VE  + +   A  
Sbjct: 27  PGMDAALLAATCDALPGQ--RVLEPGCGVGGALLAAATRRPEAIFQGVERDETAASLAAE 84

Query: 250 NIAANHVN-NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
           N+A N +   V I +   +   +A+        + +              P +SG 
Sbjct: 85  NVALNGLTSRVAIAQGDVEAGFRALGLPVFDAVMANPPYFDDPSALRAPSPAKSGA 140


>gi|268534952|ref|XP_002632609.1| C. briggsae CBR-COQ-3 protein [Caenorhabditis briggsae]
          Length = 255

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV------NNVKIV 262
               L+++  G G  S+ LAR    V  ++  K +V+AAR ++ +  +        ++  
Sbjct: 63  TSKRLVDVGSGGGLLSIPLARSGFDVTGIDATKQAVDAARLSLQSAPLQRSRITERLRFE 122

Query: 263 RMSSKEFTQAMRREREFN 280
            MS + F Q    +  F+
Sbjct: 123 HMSVENFCQKPENKSAFD 140


>gi|120600165|ref|YP_964739.1| HemK family modification methylase [Shewanella sp. W3-18-1]
 gi|146291907|ref|YP_001182331.1| HemK family modification methylase [Shewanella putrefaciens CN-32]
 gi|120560258|gb|ABM26185.1| modification methylase, HemK family [Shewanella sp. W3-18-1]
 gi|145563597|gb|ABP74532.1| modification methylase, HemK family [Shewanella putrefaciens CN-32]
 gi|319425198|gb|ADV53272.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shewanella putrefaciens 200]
          Length = 282

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 30/172 (17%)

Query: 131 WRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
           W E A+ +      ++  ++         I  +R++      V   TLI R         
Sbjct: 47  WPEKALTIDQWKRFQQMVLKRQKGVPVAHIVGEREFWSLPFIVNDTTLIPRPD------- 99

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
                  ++E  L         +L+L  G G  +L LA  R    + AV+    +V  A 
Sbjct: 100 ----TEILVETALNLPLSTYAKVLDLGTGTGAIALALASERESWEITAVDKVDDAVALAI 155

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            N     +  V+I++                       + S  F  I  +PP
Sbjct: 156 ANRENLKLPQVEILQSD-----------------WFSAVKSRDFDLIVSNPP 190


>gi|332306611|ref|YP_004434462.1| rRNA (guanine-N(2)-)-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173940|gb|AEE23194.1| rRNA (guanine-N(2)-)-methyltransferase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 701

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L   +    D+L L+   G+ S+  A      V  V+++   ++ A+ N A N++     
Sbjct: 531 LVQQRAKDKDVLNLFAYTGSVSVHAALGKAKSVTTVDMSNTYIDWAKENFALNNLKG--- 587

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
               + EF QA       + L  ++ H+ ++  IF+DPP  
Sbjct: 588 ----AYEFIQA-------DCLTWLERHNNQYDFIFIDPPSF 617


>gi|323211525|gb|EFZ96364.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
          Length = 245

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VL    G +  +L+   G G  ++ +A    +V   +++   +  AR    A  V  
Sbjct: 34  LDRVLEEIGGRKLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSK 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++  +++    +    + 
Sbjct: 94  DMHFIQCPAQDVASHLESPVDL 115


>gi|322695879|gb|EFY87680.1| ubiE/COQ5 methyltransferase, putative [Metarhizium acridum CQMa
           102]
          Length = 273

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            +L++ CG G  ++ LA H    RV+ +E A   +E AR   A   V N++     +
Sbjct: 43  TILDIGCGPGTITVDLAGHVPEGRVIGLERAAKVLEQARALAADKGVENIEFTEGDA 99


>gi|289526956|pdb|3LPM|A Chain A, Crystal Structure Of Putative Methyltransferase Small
           Domain Protein From Listeria Monocytogenes
 gi|289526957|pdb|3LPM|B Chain B, Crystal Structure Of Putative Methyltransferase Small
           Domain Protein From Listeria Monocytogenes
          Length = 259

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 16/104 (15%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
            +G +++L  GNG   L+L+     +++ VEI +   + A+ ++A N + + ++I+    
Sbjct: 49  RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADXAKRSVAYNQLEDQIEIIEYDL 108

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           K+ T  + +ER                 +  +PP     D ++ 
Sbjct: 109 KKITDLIPKERA--------------DIVTCNPPYFATPDTSLK 138


>gi|261494408|ref|ZP_05990897.1| 23S rRNA metyluridine methyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309934|gb|EEY11148.1| 23S rRNA metyluridine methyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 193

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 24/186 (12%)

Query: 33  LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQT--KERMRIDYFMPGSLLINALMIEM 90
           L +  S   H+R +A+  +    +     +   Q   +  + +   +       +L   +
Sbjct: 8   LPLVASPISHFRNKAKMVVSGSVERPILGILKDQHDPQSGVDLTDCLLYPASFYSLFPIL 67

Query: 91  MATIRLEPLL-------RAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR----LR 139
              I    L+       + +L  I    SQ +Q+++     R   ++ R    R    L 
Sbjct: 68  KDFIGRAGLVPYNIKKKKGELKYILITESQYNQSLMLRFVVR--SESKRALVERELPHLL 125

Query: 140 DALHA---RKYQIQLIGRA---NKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAG 193
           + L         IQ    A    +T+I L    V E       ++        F Q N  
Sbjct: 126 EKLPPNSVVSLNIQPQHAAVLEGETEIFLTERKVIEE---NFNSVPLFIRPQGFFQTNPT 182

Query: 194 INVHML 199
           +   + 
Sbjct: 183 VASQLY 188


>gi|229158890|ref|ZP_04286947.1| Protein hemK [Bacillus cereus ATCC 4342]
 gi|228624501|gb|EEK81271.1| Protein hemK [Bacillus cereus ATCC 4342]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|220904892|ref|YP_002480204.1| modification methylase, HemK family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869191|gb|ACL49526.1| modification methylase, HemK family [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 305

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 17/129 (13%)

Query: 142 LHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEW 201
           L AR+   + +     +K    RD+     T+  R      ++ +           +++ 
Sbjct: 60  LLARRAAGEPLAHITGSKEFYGRDFAVTPHTLIPRPETELLVDKAI-----EAARKIIDA 114

Query: 202 VLAA----------TKGIQGDLLELYCGNGNFSLVLARHFDRVLAV--EIAKPSVEAARY 249
                           G      +L CG+G   + LA        V  +I+  +V+ AR+
Sbjct: 115 ADRQGLRHAKTEGTPAGCGPCFADLGCGSGCIGITLALELPHWQGVLVDISPEAVQTARH 174

Query: 250 NIAANHVNN 258
           N A+    N
Sbjct: 175 NAASLGAQN 183


>gi|182415843|ref|YP_001820909.1| ArsR family transcriptional regulator [Opitutus terrae PB90-1]
 gi|177843057|gb|ACB77309.1| transcriptional regulator, ArsR family [Opitutus terrae PB90-1]
          Length = 312

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           D+ +L  G G  S +LA    +V  ++ +   VE        N++ N+       +    
Sbjct: 149 DIADLGAGEGLLSQLLAARARQVWCIDNSPRMVEVGTTLARKNNLANLSYKLGDIEHV-P 207

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
              R  +   L     H+   +T   +  R
Sbjct: 208 LGDRSVDLAILSQALHHAQHPQTAVNEAFR 237


>gi|161617794|ref|YP_001591758.1| hypothetical protein SPAB_05658 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161367158|gb|ABX70926.1| hypothetical protein SPAB_05658 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|197122807|ref|YP_002134758.1| methyltransferase type 11 [Anaeromyxobacter sp. K]
 gi|196172656|gb|ACG73629.1| Methyltransferase type 11 [Anaeromyxobacter sp. K]
          Length = 296

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
            +L++ CG G+ +++LA H  RV AV+++  S+E AR   A   +    + V    +
Sbjct: 65  RILDVGCGLGDNAILLASHGARVTAVDLSARSIELARRRAAQAGLAEPPEFVCAPLE 121


>gi|163788596|ref|ZP_02183041.1| putative protoporphyrinogen oxidase [Flavobacteriales bacterium
           ALC-1]
 gi|159875833|gb|EDP69892.1| putative protoporphyrinogen oxidase [Flavobacteriales bacterium
           ALC-1]
          Length = 492

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 52/114 (45%), Gaps = 15/114 (13%)

Query: 195 NVHMLEWVLAATKGIQGD----LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAAR 248
              +++ ++        +    +L++  G+G  ++ LA++     V A+++++ +++ A+
Sbjct: 98  TEELVDLIIKYHSEQSEESQLRILDIGTGSGCIAISLAKNLPSAEVYALDVSEDALKIAK 157

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYR--FKTIFVDPP 300
            N   N+V+ +  +       T  ++   +    KDI +   R  F  I  +PP
Sbjct: 158 QNADLNNVS-INFIE------TDILKISNDSFFWKDITLQQKRLVFDIIVSNPP 204


>gi|118577088|ref|YP_876831.1| precorrin-6B methylase [Cenarchaeum symbiosum A]
 gi|118195609|gb|ABK78527.1| precorrin-6B methylase [Cenarchaeum symbiosum A]
          Length = 198

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 211 GDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             + ++ CG+G+F++  A        + A++    ++E  R N+A   V N  ++   ++
Sbjct: 41  DTVHDIGCGSGSFTVEAALQVGASGSIHAIDSDPRAIELTRRNLARFGVENATVILGDAR 100

Query: 268 EFTQAMRRER 277
           E    +    
Sbjct: 101 EKVSGLPEAD 110


>gi|58336710|ref|YP_193295.1| hypothetical protein LBA0373 [Lactobacillus acidophilus NCFM]
 gi|58254027|gb|AAV42264.1| hypothetical protein LBA0373 [Lactobacillus acidophilus NCFM]
          Length = 206

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 19/125 (15%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANH 255
           +L   +      + ++L++  G G   L  A+      V  +++ +  +  AR N   N+
Sbjct: 52  VLIKAMKDISFPKANILDVGTGYGPIGLFAAKFWPDQEVDMIDVNERGLNLARENAKVNN 111

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQA 314
           + NV I   +  E                   +  +F  I  +PP R+G       ++ A
Sbjct: 112 IENVNIYASNCYEQID----------------NDKKFGLILTNPPIRAGKKVVNEILIGA 155

Query: 315 YPHIL 319
             H++
Sbjct: 156 NEHLV 160


>gi|55377789|ref|YP_135639.1| protein-L-isoaspartate O-methyltransferase [Haloarcula marismortui
           ATCC 43049]
 gi|55230514|gb|AAV45933.1| protein-L-isoaspartate O-methyltransferase [Haloarcula marismortui
           ATCC 43049]
          Length = 204

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 12/156 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V  A       +L+L  G G  +  LA     ++  +I+   +E AR       V NV  
Sbjct: 36  VDHAAPESDDVVLDLGTGTGAIAFALASDAAEIIGRDISDGMLEKAREKADGRGVENVSF 95

Query: 262 ----VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                R  + +    +            D       TI    PR  +    +      P 
Sbjct: 96  GDGRFRAPNVDRPVDIVTSNFAMHHLGDDEKREAIDTIADLGPRRIVLGDVMLFGDDDPD 155

Query: 318 ILYIS---CNPDS---LCRDLSILSTTHTIERLALF 347
             + S    +P +   L    +     + +  + + 
Sbjct: 156 APFYSPEVDDPATVGVLAD--AFTDAGYALTAVEMV 189


>gi|46198381|ref|YP_004048.1| methyltransferase [Thermus thermophilus HB27]
 gi|46196003|gb|AAS80421.1| methyltransferase [Thermus thermophilus HB27]
          Length = 500

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L++  G G  +L L  A     V A E+   ++  AR N     
Sbjct: 106 LVELALGLPLPPAPRILDVGTGTGAIALALKRALPEAEVYATEVDPKALALARENAERLG 165

Query: 256 VNNV 259
           +  V
Sbjct: 166 LAVV 169


>gi|84617327|emb|CAI94687.1| hypothetical protein [Streptomyces achromogenes subsp. rubradiris]
          Length = 331

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA     +G +L++ CG G  +L+ A      + ++ A  ++E AR       +   + +
Sbjct: 165 LAEAGAFRGRVLDVGCGTGEVALMAAALGLPTVGIDPASTAIEIARRKAEERGLQ-ARFL 223

Query: 263 RMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              + E          +     F+   D +   Y      V PP
Sbjct: 224 VGDALELGAMGEQFDTVLDCGLFHVFSDAERVRYADSLATVMPP 267


>gi|70945732|ref|XP_742654.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56521757|emb|CAH79005.1| hypothetical protein PC000025.03.0 [Plasmodium chabaudi chabaudi]
          Length = 190

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 27/117 (23%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV------- 256
               Q ++L+L+   G+F +   ++     V  VE  K  V+ A+ +   N++       
Sbjct: 4   NYSCQKNVLDLFSYVGSFGIQCLKNGKAMHVTCVEKDKNFVQLAKQSAIINNIPQPSMEN 63

Query: 257 ---NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              +N++ + + +  F +   +                F  I +DPP        + 
Sbjct: 64  NEQSNIEFICLDAITFLKNCNKL---------------FDIIILDPPNLIPKSKFIE 105


>gi|32491093|ref|NP_871347.1| hypothetical protein WGLp344 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166300|dbj|BAC24490.1| hemK [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 281

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL--AVEIAKPSVEAARYNIAANH 255
           ++E  L+     +  +LEL  G+G  SL L +   + +   ++  K S+  +R N    +
Sbjct: 103 LIETALSLPLKKESRILELGSGSGVISLSLGKENPKWIITGIDKNKKSIFLSRKNAKMLN 162

Query: 256 VNNVKI 261
           +NNVK 
Sbjct: 163 INNVKF 168


>gi|154245090|ref|YP_001416048.1| trans-aconitate 2-methyltransferase [Xanthobacter autotrophicus
           Py2]
 gi|154159175|gb|ABS66391.1| Trans-aconitate 2-methyltransferase [Xanthobacter autotrophicus
           Py2]
          Length = 258

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN 257
           + +        G +++L CG GN + +LA  F    VL ++ +   + AAR       + 
Sbjct: 23  DLLAQVPLPDAGFVVDLGCGPGNSTQLLAERFPGAEVLGLDTSPDMLAAARA-----RLP 77

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           N +     +  FT     +  F
Sbjct: 78  NARFEAGDASTFTLDKPADLIF 99


>gi|332967821|gb|EGK06920.1| protein methyltransferase HemK [Kingella kingae ATCC 23330]
          Length = 269

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 20/119 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIA 252
             H+LE  L      +G L ++  G+G  ++   L R    V A +I+  ++  A++N  
Sbjct: 89  TEHLLEAAL-CRLPARGFLWDMGTGSGIIAISAKLERTDANVFASDISPDALNIAQHNAQ 147

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                 V   + S                  D  + +++F  I  +PP     D  +  
Sbjct: 148 RLGAA-VAFAQGS----------------WFDCAVSAHKFDVIASNPPYINSHDTHLQQ 189


>gi|332200608|gb|EGJ14680.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptococcus pneumoniae GA41317]
          Length = 279

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 32/153 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+    L V  R LI R                ++E +L      
Sbjct: 62  QLAAHKPAQYIIGQADFYGMHLKVDERVLIPRPE-----------TEELVELILTENLET 110

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A ++++ +++ A  N       N++I    S 
Sbjct: 111 NLSVLDIGTGSGAIALALAKNRPDWSVTAADVSQEALDLASENAKN---QNLQIFFKKSD 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            FT+                 S ++  I  +PP
Sbjct: 168 CFTE----------------ISEKYDIIVSNPP 184


>gi|326508760|dbj|BAJ95902.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 14/203 (6%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD 140
            LI++L+       RL   L  +   +  +T         L++  + ++ W+  A  L  
Sbjct: 505 ELISSLLERKGMPSRLLEQLPTRWETLGDITVLPKTCFKDLLWESVREELWQLVAKSLGA 564

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS--FTQPNAGINVHM 198
              AR+ +I   G  + T   L  D     +T     + Y        F+  N       
Sbjct: 565 QRLARQGKIIPNGTRDSTLELLVGDNGW--VTHYENGITYSLDATKCMFSSGNRS----- 617

Query: 199 LEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANH 255
            E +       + +++ +L+ G G F L   +  +   V A E    ++EA + N+  NH
Sbjct: 618 -EKLRMGQLDCRDEVVVDLFSGIGYFVLPFLVKANAKLVYACEWNPHALEALQRNVMDNH 676

Query: 256 -VNNVKIVRMSSKEFTQAMRRER 277
             +   I+   ++        +R
Sbjct: 677 VADRCVILEGDNRLIAPKGVADR 699


>gi|307309486|ref|ZP_07589142.1| methyltransferase small [Sinorhizobium meliloti BL225C]
 gi|307320603|ref|ZP_07600017.1| methyltransferase small [Sinorhizobium meliloti AK83]
 gi|306893753|gb|EFN24525.1| methyltransferase small [Sinorhizobium meliloti AK83]
 gi|306900071|gb|EFN30691.1| methyltransferase small [Sinorhizobium meliloti BL225C]
          Length = 244

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 17/121 (14%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +   +     ++++ CG+GN +L +A      RV   ++   +V  AR N+    + + 
Sbjct: 49  AILTERAGPATVIDMCCGSGNLALGIAEEVPLARVWGADLTDSTVALARRNVDRLSLGDR 108

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR---SGLDDATVGMVQAYP 316
            ++R    +   A+  E         D+       I  +PP    S L+  +  ++ + P
Sbjct: 109 VVIR--QGDLFAALAGE---------DLEGAV-DMIVCNPPYISTSRLEGDSAHLLASEP 156

Query: 317 H 317
            
Sbjct: 157 R 157


>gi|303235586|ref|ZP_07322193.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302484033|gb|EFL47021.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 402

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 14/109 (12%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L         +L ++C  G FS+   R   + V +V+ +  +VE    NIA N   N K 
Sbjct: 223 LLEYYAKGRSVLNMFCYTGGFSVYAMRGGAKMVHSVDSSAKAVELTNQNIALN-FPNDKR 281

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                ++  + +            D +  ++  I +DPP      + + 
Sbjct: 282 HAAICEDAFKYL------------DDNDGKYDLIILDPPAFAKHRSALK 318


>gi|300310972|ref|YP_003775064.1| UbiE/COQ5 family SAM-dependent methyltransferase [Herbaspirillum
           seropedicae SmR1]
 gi|300073757|gb|ADJ63156.1| UbiE/COQ5 family SAM-dependent methyltransferase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 19/170 (11%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                 + E    A       +L+L CG G+ S  +A   ++V+A +++   ++      
Sbjct: 25  HAQGADLQELAAIAAAIPAARVLDLGCGGGHASFAVAPVVEKVIAYDLSPAMLDVVATAA 84

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A   + N+ + + S+        R    +   D+    +        P           +
Sbjct: 85  AERGLANLAVRQGSAD-------RLDFPDASFDLVCTRFSAHHWRNLPQ---ALAEVFRV 134

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVL 361
           ++     + I    D+      +L+ T+    +   +    T H+    L
Sbjct: 135 LKMGGRFIVI----DTAA-PADVLADTY----VQSIELLRDTSHVRNISL 175


>gi|291244608|ref|XP_002742188.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 293

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNI 251
           I   ++   +    G         CG+G  +  LA+         ++I++ ++ AA+   
Sbjct: 98  IQAKLVAEAVVCEIG---------CGSGMHTCTLAQLYPACEFYGIDISEKTIAAAQTRA 148

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
               ++NV  ++  +       + + +     D+     R   +  +  R   DD  
Sbjct: 149 LEMKLSNVTFLQCDASNMADEWKSKFDIVFTMDVVHDLPRPDLVHYEIIRIMKDDGI 205


>gi|262394179|ref|YP_003286033.1| hypothetical protein VEA_003408 [Vibrio sp. Ex25]
 gi|262337773|gb|ACY51568.1| hypothetical protein VEA_003408 [Vibrio sp. Ex25]
          Length = 397

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 163 KEGLKETTGVLHGEEPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 210

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +            ++L  +   G F L  L     RV+  ++++P+++ A++N
Sbjct: 211 RQQAMKYV---------KGKEVLNCFSYTGGFGLYALKGDAKRVINADVSQPALDTAKFN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTQFDVVIMDPPKFADSKAQLN 313

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 314 GACRGYKDI 322


>gi|242822386|ref|XP_002487876.1| arsenic methyltransferase Cyt19, putative [Talaromyces stipitatus
           ATCC 10500]
 gi|218712797|gb|EED12222.1| arsenic methyltransferase Cyt19, putative [Talaromyces stipitatus
           ATCC 10500]
          Length = 275

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVN 257
           V  A       +++L  G G   + LA        + + +++ K  ++ A  N  A  ++
Sbjct: 59  VAYANVKEGETVVDLGSG-GGIDVFLAARKVGPAGKAIGIDMTKNMIDLAIENAKAAGLS 117

Query: 258 NVKIVRMS 265
           N   +  S
Sbjct: 118 NATFIEAS 125


>gi|118480363|ref|YP_897514.1| HemK family modification methylase [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419588|gb|ABK88007.1| modification methylase, HemK family [Bacillus thuringiensis str. Al
           Hakam]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|45184791|ref|NP_982509.1| AAL033Wp [Ashbya gossypii ATCC 10895]
 gi|44980137|gb|AAS50333.1| AAL033Wp [Ashbya gossypii ATCC 10895]
          Length = 489

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 13/108 (12%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQ 271
           + +++ G G F++  A+    VLA ++   S    R NIAAN V+  V+   +  +EF +
Sbjct: 268 VADVFAGVGPFAIPAAKKEVLVLANDLNPESFRYLRDNIAANKVDGFVRPKNLDGREFIR 327

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +         L+D    +    T+     R G          A P I+
Sbjct: 328 SSPAL-----LRDWTAQTGGSVTVAPARRRRGAPP-------APPRIV 363


>gi|116492640|ref|YP_804375.1| O-methyltransferase [Pediococcus pentosaceus ATCC 25745]
 gi|116102790|gb|ABJ67933.1| Predicted O-methyltransferase [Pediococcus pentosaceus ATCC 25745]
          Length = 251

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
           ++ L  D   ++L      +I      SF      ++  +L       K  +  +++L  
Sbjct: 2   QVELKSDERIDQLYRDDIQIIQSPSVFSF-----SLDAVLLANFAEVKKASKTKIVDLCS 56

Query: 219 GNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN 258
           GNG   L L++     V  VEI     E A  +I  N + +
Sbjct: 57  GNGAVGLFLSKKTAGHVTMVEIQSRLAEMAMRSIQLNDLTD 97


>gi|325519062|gb|EGC98560.1| ubiquinone/menaquinone biosynthesis methylase-like protein
           [Burkholderia sp. TJI49]
          Length = 209

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 213 LLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           +L++ CG G  +L +A+      +   V+I+   ++AAR     + +  V+ VR  +
Sbjct: 52  VLDVGCGTGAVTLAIAQRLGADAQCTGVDISARMIDAARVRAERSGLP-VRFVRADA 107


>gi|315223891|ref|ZP_07865738.1| conserved hypothetical protein [Capnocytophaga ochracea F0287]
 gi|314946143|gb|EFS98145.1| conserved hypothetical protein [Capnocytophaga ochracea F0287]
          Length = 386

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 6/131 (4%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
           Q ++            A        L+L CG G  +  L+  F  V  VE  K  +    
Sbjct: 73  QTSSEATAQ-----YKAQGLHGERFLDLTCGFGIDAFFLSEKFKEVTLVEQNKKLLSKVE 127

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           +N           +  S++ F +A         L      + + K   ++     + +  
Sbjct: 128 HNWQVLG-RKATFINGSAEAFLKATTAHYNLIYLDPARRDALKQKKFLLEDLSPNILELQ 186

Query: 309 VGMVQAYPHIL 319
             ++Q    +L
Sbjct: 187 SVLLQKADKVL 197


>gi|296271439|ref|YP_003654071.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobispora bispora DSM
           43833]
 gi|296094226|gb|ADG90178.1| rRNA (adenine-N(6)-)-methyltransferase [Thermobispora bispora DSM
           43833]
          Length = 278

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V AA       ++E   G G  +L LAR   RV+A EI    V A R          V +
Sbjct: 46  VDAARLSPDDLVVEPGAGYGALTLALARTCRRVIAYEIDP--VAAGRLAARTRGDPAVHV 103

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           V      F +A      F  + +I  H       + 
Sbjct: 104 VAGD---FLRARPPREPFAVVGNIPYHLTSPIVDWC 136


>gi|291236696|ref|XP_002738274.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
          Length = 322

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G   ++LA+ F R     ++I+  ++ AA+       + N+      +   
Sbjct: 141 TVLDVGCGKGRAPMILAQKFPRSSFYGIDISASAISAAQIEAEEMSLTNIHFQVHDAASL 200

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
                 + E+    D          +  +  R      T  M++
Sbjct: 201 PCDWTDKFEYVTALDCIHDQAEPLQVLHEIRRVLKPGGTFSMLE 244


>gi|218884457|ref|YP_002428839.1| Ribosomal RNA small subunit methyltransferase C (RRNA
           (Guanine-n2-)- methyltransferase) [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766073|gb|ACL11472.1| Ribosomal RNA small subunit methyltransferase C (RRNA
           (Guanine-n2-)- methyltransferase) [Desulfurococcus
           kamchatkensis 1221n]
          Length = 200

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 18/114 (15%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                G +L++ CG G   +V+A+      V   ++   +V+ AR N + N+V +  +V 
Sbjct: 58  MVPRSGVVLDIGCGYGVIGIVVAKLNPLLEVYMTDVNPLAVKVARLNASRNNVEDRVVV- 116

Query: 264 MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                         + +R K   +   +F  I+ +PP S        +V     
Sbjct: 117 -------------LQGDRYK--PVEGMKFNAIYSNPPLSAGMRIVEDIVLGARR 155


>gi|186476997|ref|YP_001858467.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia phymatum STM815]
 gi|184193456|gb|ACC71421.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Burkholderia phymatum STM815]
          Length = 217

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +L+ +          +LE+  G+G  + +LA     VL V+I       A+ N+
Sbjct: 63  PRVEARVLQELAVKKHES---VLEIGAGSGYMAALLAHRALHVLTVDIEPELAGLAKANL 119

Query: 252 AANHVNNVKIVRMS 265
           AAN V N ++    
Sbjct: 120 AANGVLNAEVATGD 133


>gi|164685864|ref|ZP_01947517.2| putative methyltransferase [Coxiella burnetii 'MSU Goat Q177']
 gi|212217694|ref|YP_002304481.1| methyltransferase [Coxiella burnetii CbuK_Q154]
 gi|164601381|gb|EAX31863.2| putative methyltransferase [Coxiella burnetii 'MSU Goat Q177']
 gi|212011956|gb|ACJ19336.1| methyltransferase [Coxiella burnetii CbuK_Q154]
          Length = 193

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 25/134 (18%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             +  W+      +  + L+L+ G+G      L+R   +V  V+ ++  V+  R N+   
Sbjct: 34  ETLFNWLAPYI--VDANCLDLFAGSGALGFEALSRGAAQVTFVDHSRYVVDKLRKNVEIL 91

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-------RSGLDDA 307
              N +++                        + +  +  +F+DPP       R+ L   
Sbjct: 92  QATNAQVLCGDCTSVIP--------------FLTTTSYNIVFLDPPFYKNLVERAALHLE 137

Query: 308 TVGMVQAYPHILYI 321
              ++ A    +Y+
Sbjct: 138 ESKLL-APNAFIYV 150


>gi|154253472|ref|YP_001414296.1| protein-L-isoaspartate O-methyltransferase [Parvibaculum
           lavamentivorans DS-1]
 gi|209573205|sp|A7HXK6|PIMT_PARL1 RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|154157422|gb|ABS64639.1| protein-L-isoaspartate O-methyltransferase [Parvibaculum
           lavamentivorans DS-1]
          Length = 222

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 6/105 (5%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             I  +M E +     G +  +LE+  G+G  + VL+R   RV  +E  +  ++ A   +
Sbjct: 69  PYIVAYMTEQL---HVGERMKVLEVGTGSGYQAAVLSRLCRRVYTIERYRTLLKDAVKRL 125

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
              H++N   V     +  Q    +  F+R+          + + 
Sbjct: 126 EDLHIHN---VTAKVGDGAQGWPEQAPFDRIIVTAAAPSVPQKLV 167


>gi|260467161|ref|ZP_05813339.1| modification methylase, HemK family [Mesorhizobium opportunistum
           WSM2075]
 gi|259029085|gb|EEW30383.1| modification methylase, HemK family [Mesorhizobium opportunistum
           WSM2075]
          Length = 292

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 35/242 (14%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD 140
            L+      ++A    +P L A+L  +++ +  +    +     ++   A       LR 
Sbjct: 11  PLLREARARLVAAAVDDPTLDARLI-VEHFSGTTRTQAIADPEFKVHGRAIETIDAALRR 69

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE 200
                       G     +I   R++   RL+++  TL  R                ++E
Sbjct: 70  R----------AGGEPVHRILGYREFYGLRLSLSPETLEPRPD-----------TETLVE 108

Query: 201 WVLAATKGIQGD-----LLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAA 253
            +L   K I        +L+L  G G  +L L  A        V+IA  ++  A  N   
Sbjct: 109 AILPFVKAIAAREGACRILDLGTGTGAIALALLSAEPAATATGVDIAPGALATATGNAGQ 168

Query: 254 NHVNNVKIVRMSSKEFTQAMRR----EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
             +   +   + S  F +   R          +   DI + + +    DP R  LD    
Sbjct: 169 LGLGG-RFTALQSDWFEKVSGRYHVIAANPPYIPSQDIGNLQDEVRDFDP-RLALDGGVD 226

Query: 310 GM 311
           G+
Sbjct: 227 GL 228


>gi|229176004|ref|ZP_04303500.1| Protein hemK [Bacillus cereus MM3]
 gi|228607497|gb|EEK64823.1| Protein hemK [Bacillus cereus MM3]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L      S +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYKTSQKLDVVVSNPP 190


>gi|220906088|ref|YP_002481399.1| SAM-dependent methyltransferase [Cyanothece sp. PCC 7425]
 gi|219862699|gb|ACL43038.1| putative SAM-dependent methyltransferase [Cyanothece sp. PCC 7425]
          Length = 400

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 15/98 (15%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEF 269
           +L  +   G FSL  L     +V +V+I K   EAA  NI  N ++      V     E 
Sbjct: 225 VLNCFAYTGAFSLYALKGGASQVTSVDIGKGLAEAATTNIKLNGLDPNRHTFVTADCFEV 284

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                +                F  I +DPP       
Sbjct: 285 LNRYVQ------------QGQTFDLIILDPPSFAKSKQ 310


>gi|167622227|ref|YP_001672521.1| putative methyltransferase [Shewanella halifaxensis HAW-EB4]
 gi|167352249|gb|ABZ74862.1| putative methyltransferase [Shewanella halifaxensis HAW-EB4]
          Length = 206

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 23/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  WV    +G    +L+ + G+G  SL  L+R+       E+   + +    N+A
Sbjct: 38  VRETLFNWVANDIRG--ARVLDCFAGSGALSLESLSRYASYAKIFELQVQAAKQLVANLA 95

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
               +N  +++  S                   +  S  F  +F+DPP R  L + ++ +
Sbjct: 96  TLKCDNADVIKGDSLALLA--------------NKPSEGFDLVFIDPPFRKSLAEKSISL 141

Query: 312 VQAY-----PHILYI 321
           +  +       ++Y+
Sbjct: 142 IDQHQWLNDDALIYV 156


>gi|11499776|ref|NP_071019.1| rRNA (adenine-N6)-methyltransferase, putative [Archaeoglobus
           fulgidus DSM 4304]
 gi|2648335|gb|AAB89062.1| rRNA (adenine-N6)-methyltransferase, putative [Archaeoglobus
           fulgidus DSM 4304]
          Length = 180

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ++E+ + + +  +  L ++  G G  ++ LAR F +V AVEI++   E  R  +    
Sbjct: 25  EKVVEF-IESLRPKKNVLFDVGAGTGYLTIPLARVFKKVYAVEISEEMAEVLRRRVEEEG 83

Query: 256 VNNVKIVR 263
           + N+ I+ 
Sbjct: 84  LLNIGIIV 91


>gi|16265092|ref|NP_437884.1| putative modification methylase protein [Sinorhizobium meliloti
           1021]
 gi|15141231|emb|CAC49744.1| putative modification methylase protein [Sinorhizobium meliloti
           1021]
          Length = 275

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 17/121 (14%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
            +   +     ++++ CG+GN +L +A      RV   ++   +V  AR N+    + + 
Sbjct: 80  AILTERAGPATVIDMCCGSGNLALGIAEEVPLARVWGADLTDSTVALARRNVDRLSLGDR 139

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR---SGLDDATVGMVQAYP 316
            ++R    +   A+  E         D+       I  +PP    S L+  +  ++ + P
Sbjct: 140 VVIR--QGDLFTALAGE---------DLEGAV-DMIVCNPPYISTSRLEGDSAHLLASEP 187

Query: 317 H 317
            
Sbjct: 188 R 188


>gi|126172945|ref|YP_001049094.1| HemK family modification methylase [Shewanella baltica OS155]
 gi|125996150|gb|ABN60225.1| modification methylase, HemK family [Shewanella baltica OS155]
          Length = 282

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 19/108 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L        ++L+L  G G  +L LA  R   ++ AV+    +V  A  N  
Sbjct: 100 TEILVETALNMPLSTYANVLDLGTGTGAIALALASERESWQITAVDKVDDAVALAIANRE 159

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              +  V I++                       + S  F  I  +PP
Sbjct: 160 NLKLPQVDILQSD-----------------WFSAVKSRDFDLIVSNPP 190


>gi|325919173|ref|ZP_08181228.1| putative methyltransferase [Xanthomonas gardneri ATCC 19865]
 gi|325550343|gb|EGD21142.1| putative methyltransferase [Xanthomonas gardneri ATCC 19865]
          Length = 224

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 48/142 (33%), Gaps = 19/142 (13%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
           F Q        +L   +A        +LEL CG G  SLVL R    V+A +    +   
Sbjct: 49  FGQVWPAGQ--LLAEAMATRPIEGRRILELGCGLGLASLVLRRRGADVVASDHHPLAEVF 106

Query: 247 ARYNIAANHVNNVKIVRMS---------------SKEFTQAMRREREFNRLKDIDIHSYR 291
             YN A N + +V   R+                + +     R      +L    +    
Sbjct: 107 LAYNAALNALESVPYRRLDWDTGAPNMGQFDMIIASDVLYETRHATMLAKLI-PALAKPS 165

Query: 292 FKTIFVDPPRSGLDDATVGMVQ 313
            + +  DP R G  +A   M+ 
Sbjct: 166 CEIVISDPGR-GNANALSRMLA 186


>gi|319763151|ref|YP_004127088.1| methyltransferase type 11 [Alicycliphilus denitrificans BC]
 gi|330825214|ref|YP_004388517.1| type 11 methyltransferase [Alicycliphilus denitrificans K601]
 gi|317117712|gb|ADV00201.1| Methyltransferase type 11 [Alicycliphilus denitrificans BC]
 gi|329310586|gb|AEB85001.1| Methyltransferase type 11 [Alicycliphilus denitrificans K601]
          Length = 264

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           ++V          LL++ CG G  +L +A    RV+ ++ +   ++A R   A   + +V
Sbjct: 48  DFVARMDLAGAESLLDVGCGPGTIALAVAPRLRRVVGLDYSAAMLDALRALAAEQGLQHV 107

Query: 260 KIVRMSSKE 268
           + +  + ++
Sbjct: 108 ETLHRAWED 116


>gi|261493249|ref|ZP_05989776.1| protein-glutamine N-methyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261311099|gb|EEY12275.1| protein-glutamine N-methyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 417

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 195 NVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246
              ++E  L        +     +L+L  G G  +L LA        ++ V+    +V+ 
Sbjct: 230 TERLVELALEYANKRLENQKMLQILDLGTGTGAIALALASELGEKAQIIGVDFQNEAVQL 289

Query: 247 ARYNIAANHVNNVKIVRMS 265
           A  N     +N V  ++  
Sbjct: 290 AEENRQHLGLNQVTFLQSD 308


>gi|260914497|ref|ZP_05920966.1| ribosomal protein L11 methyltransferase [Pasteurella dagmatis ATCC
           43325]
 gi|260631598|gb|EEX49780.1| ribosomal protein L11 methyltransferase [Pasteurella dagmatis ATCC
           43325]
          Length = 293

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L +       +++  CG+G  ++  L       + ++I   ++ A+R N   N V 
Sbjct: 149 LEW-LDSLDLKDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVA 207

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +   + +S+ +           N L       Y   +  V P
Sbjct: 208 DKLQLFLSADKPVDLKADVVVANILAGPLKELYPVISQLVQP 249


>gi|218666797|ref|YP_002427345.1| hypothetical protein AFE_2978 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218519010|gb|ACK79596.1| conserved domain protein [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 230

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           CG G   + LAR  + V  V+++   +E AR N AA  V NV
Sbjct: 53  CGVGRLLIPLARIAEEVTGVDVSDAMLEEARKNCAAQSVRNV 94


>gi|126731920|ref|ZP_01747724.1| putative methyltransferase [Sagittula stellata E-37]
 gi|126707747|gb|EBA06809.1| putative methyltransferase [Sagittula stellata E-37]
          Length = 211

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LE ++A      G  ++L CG G+ ++ LAR+  +V+AV++++ +++  R N     V 
Sbjct: 34  LERLIAGRPA--GRAVDLGCGRGDDAIWLARNGWKVVAVDVSQAALDTVRRNAETAGVA 90


>gi|170731822|ref|YP_001763769.1| methyltransferase small [Burkholderia cenocepacia MC0-3]
 gi|169815064|gb|ACA89647.1| methyltransferase small [Burkholderia cenocepacia MC0-3]
          Length = 397

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 5/121 (4%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYN-IAAN 254
             +E V  A         ++  G G  + VLA R  +RV+A +    ++  AR N     
Sbjct: 205 EYVELVARAPLQATSLAFDIGTGTGVLAAVLASRGVERVVATDQDPRALACARENVARLG 264

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           H   V+IV         A R          +           V  P S +    +  + A
Sbjct: 265 HAGQVEIVEAD---LFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLAA 321

Query: 315 Y 315
           +
Sbjct: 322 H 322


>gi|268566247|ref|XP_002639672.1| Hypothetical protein CBG12390 [Caenorhabditis briggsae]
 gi|187029521|emb|CAP31376.1| hypothetical protein CBG_12390 [Caenorhabditis briggsae AF16]
          Length = 573

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 215 ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAM 273
           + + G G  ++  A     V+A+++    ++ AR N     V + +  +     + +   
Sbjct: 404 DAFTGVGGNAIQFALRGAHVIAIDMDPVRLKCARENARVYGVADYIDFICADFFDVSATW 463

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
             +++          + +   +F+ PP  G
Sbjct: 464 AADKKL---------APKVDAVFLSPPWGG 484


>gi|254228275|ref|ZP_04921704.1| hypothetical protein VEx25_B0239 [Vibrio sp. Ex25]
 gi|151939348|gb|EDN58177.1| hypothetical protein VEx25_B0239 [Vibrio sp. Ex25]
          Length = 386

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 31/189 (16%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E        LH  +    ++   N  KI +D       +    +T  Y    +S     
Sbjct: 152 KEGLKETTGVLHGEEPPKSVVIEENGVKISVD-------IVGGHKTGFYLDQRDS----- 199

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
               +  +            ++L  +   G F L  L     RV+  ++++P+++ A++N
Sbjct: 200 RQQAMKYV---------KGKEVLNCFSYTGGFGLYALKGDAKRVINADVSQPALDTAKFN 250

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV- 309
              N             +          F  L++      +F  + +DPP+     A + 
Sbjct: 251 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTQFDVVIMDPPKFADSKAQLN 302

Query: 310 GMVQAYPHI 318
           G  + Y  I
Sbjct: 303 GACRGYKDI 311


>gi|116511059|ref|YP_808275.1| hypothetical protein LACR_0235 [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106713|gb|ABJ71853.1| SAM-dependent methyltransferase [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 276

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 18/119 (15%)

Query: 166 YVDERLTVAGRTL--IYRQIENSFT--------QPNAGINVHMLEWVLAAT----KGIQG 211
           ++   LTV  + L  I  + E +F         Q    ++  + E  L  T         
Sbjct: 12  FIFYPLTVRQKGLSLIQERAEMAFYEDFSRVYDQV---MDQELYEQWLDFTKRHLPKETK 68

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            + EL CG+G  S+ LA+    V  ++I++  +  A           ++      ++ +
Sbjct: 69  SVFELACGSGALSVRLAQEGYEVTGLDISEEMLTLASKKARQAGYK-LEFTAGDMRDLS 126


>gi|15900892|ref|NP_345496.1| HemK protein [Streptococcus pneumoniae TIGR4]
 gi|111658250|ref|ZP_01408942.1| hypothetical protein SpneT_02000564 [Streptococcus pneumoniae
           TIGR4]
 gi|14972494|gb|AAK75136.1| HemK protein [Streptococcus pneumoniae TIGR4]
          Length = 279

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 32/153 (20%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
           QL        I    D+    L V  R LI R                ++E +LA     
Sbjct: 62  QLAAHKPAQYIIGQADFYGMHLKVDERVLIPRPE-----------TEELVELILAENPVK 110

Query: 210 QGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
              +L++  G+G  +L LA++     V A +I++ +++ A  N       N++I    S 
Sbjct: 111 NLMVLDIGTGSGAIALALAKNRPDWSVTAADISQDALDVASENAKN---QNLQIFLKKSD 167

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            FT+                 S ++  I  +PP
Sbjct: 168 CFTE----------------ISEKYDIIVSNPP 184


>gi|327394635|dbj|BAK12057.1| methylase HemK family protein YfcB [Pantoea ananatis AJ13355]
          Length = 292

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   IEN F     
Sbjct: 54  ERHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELIENRF----- 107

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A  N
Sbjct: 108 ----------AGLITDKPRHILDMCTGSGCIAIACAYAFPDAEVDAVDISHDALAVAEQN 157

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  +++V  +R               F  L  +     ++  I  +PP
Sbjct: 158 IEEHGLIHHVTPIRAD------------LFRELPPV-----QYDLIVTNPP 191


>gi|323143727|ref|ZP_08078395.1| ribosomal protein L11 methyltransferase [Succinatimonas hippei YIT
           12066]
 gi|322416440|gb|EFY07106.1| ribosomal protein L11 methyltransferase [Succinatimonas hippei YIT
           12066]
          Length = 293

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           LEW L     +   +L+  CG+G  ++  L         V+I   ++EA+  N   N V
Sbjct: 148 LEW-LDGLNLLDKTVLDYGCGSGILAIAALKLGAKEAYGVDIDPQALEASEENAKRNGV 205


>gi|320101338|ref|YP_004176930.1| 16S rRNA m(2)G 1207 methyltransferase [Desulfurococcus mucosus DSM
           2162]
 gi|319753690|gb|ADV65448.1| 16S rRNA m(2)G 1207 methyltransferase [Desulfurococcus mucosus DSM
           2162]
          Length = 193

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 18/112 (16%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
             +G +L++ CG G   +V+AR   R  V   ++   +V+ AR+N   N V +  +V   
Sbjct: 53  PEEGVVLDIGCGYGVIGIVVARLNPRLKVYMTDVNPLAVKTARFNARRNGVGDRVVVV-- 110

Query: 266 SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                     E +  R     +    F  I+ +PP +        +V     
Sbjct: 111 ----------EGDGYR----PVEGLVFNAIYSNPPLAAGMRVVEEIVLGAKE 148


>gi|302869938|ref|YP_003838575.1| methyltransferase [Micromonospora aurantiaca ATCC 27029]
 gi|302572797|gb|ADL48999.1| methyltransferase small [Micromonospora aurantiaca ATCC 27029]
          Length = 223

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 20/123 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +L      +  + G LL++ CG G  + VLA       V AV++ + +      N A
Sbjct: 69  TAVLLRKADLPSADVTGALLDIGCGFGPITCVLATVAPKATVWAVDVNERARALTTANAA 128

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                +                R    + L D       F  I+ +PP         G++
Sbjct: 129 RVGAADR--------------VRAVAPDELPD----DVTFSQIWSNPPIHIGKPELHGLL 170

Query: 313 QAY 315
             +
Sbjct: 171 LRW 173


>gi|261402784|ref|YP_003247008.1| methyltransferase small [Methanocaldococcus vulcanius M7]
 gi|261369777|gb|ACX72526.1| methyltransferase small [Methanocaldococcus vulcanius M7]
          Length = 217

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 30/149 (20%)

Query: 190 PNAGINVH-----------MLEWVLAATKGIQGDLLELYCGNGNFSLVLARH---FDRVL 235
           PN  I +            +L + +    G    +++L CG G   L +        R +
Sbjct: 18  PNPKIELEQYTIDGKLAGDILYFAINDFYGNV--VIDLGCGTG--KLAIGSKLLGAKRAI 73

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            ++I K S++ A+ N    + + V+      +E  +    E    +LK+     Y  K I
Sbjct: 74  GIDIDKESIKVAKENAKKVNAD-VEFYCKDIREIDRQFINE----KLKE---DKYLKKII 125

Query: 296 FVDPP----RSGLDDATVGMVQAYPHILY 320
             +PP    +   D   V        ++Y
Sbjct: 126 IQNPPFGAQKKQADRIFVDKALEIGDVVY 154


>gi|240102736|ref|YP_002959045.1| Met-10 like-protein [Thermococcus gammatolerans EJ3]
 gi|239910290|gb|ACS33181.1| Met-10 like-protein [Thermococcus gammatolerans EJ3]
          Length = 368

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV- 256
           E V  A     G+ +++++ G G+ SL +A H   RV+A+E +  + +    NI  N V 
Sbjct: 206 ERVRMAKVARPGEMVVDMFAGIGHLSLPMAVHGGARVIAIEKSPYTFKFLVENIELNGVW 265

Query: 257 NNVKIVRMSSKEFTQAMRRER 277
           + +    + ++EF      +R
Sbjct: 266 DRMTAYNIDNREFPAENVADR 286


>gi|213052408|ref|ZP_03345286.1| hypothetical protein Salmoneentericaenterica_05434 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213428366|ref|ZP_03361116.1| hypothetical protein SentesTyphi_24169 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213648418|ref|ZP_03378471.1| hypothetical protein SentesTy_14714 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|205360563|ref|ZP_02684432.2| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|205348904|gb|EDZ35535.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|205357660|ref|ZP_03223793.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205330332|gb|EDZ17096.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|312915597|dbj|BAJ39571.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321222531|gb|EFX47603.1| Putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|194469822|ref|ZP_03075806.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205358607|ref|ZP_03224076.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194456186|gb|EDX45025.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332911|gb|EDZ19675.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|194450898|ref|YP_002048519.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205359316|ref|ZP_02668942.2| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194409202|gb|ACF69421.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205337034|gb|EDZ23798.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|150398939|ref|YP_001322706.1| methyltransferase small [Methanococcus vannielii SB]
 gi|150011642|gb|ABR54094.1| methyltransferase small [Methanococcus vannielii SB]
          Length = 198

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 19/112 (16%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSK 267
             D+L++ CG G   + +    + +   +I K SV  A++N+  N++   N+ +V+    
Sbjct: 56  SDDVLDIGCGYGVVGISIVAEVNSITMTDINKRSVNLAKHNLKLNNISDKNIDVVQGDVY 115

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           E                 ++    +  I  +PP     D    ++     IL
Sbjct: 116 E-----------------NVKCKNYDIIISNPPIKAGKDLIHRIITEGHLIL 150


>gi|16767744|ref|NP_463359.1| SAM-dependent methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16423065|gb|AAL23318.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|261249586|emb|CBG27455.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996846|gb|ACY91731.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160982|emb|CBW20518.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323132837|gb|ADX20267.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991309|gb|AEF10292.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 543

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 53  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 111

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 112 ANL-NIDYIQQD 122


>gi|37678845|ref|NP_933454.1| O-methyltransferase [Vibrio vulnificus YJ016]
 gi|37197586|dbj|BAC93425.1| predicted O-methyltransferase [Vibrio vulnificus YJ016]
          Length = 253

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 37/187 (19%)

Query: 160 ICLDRDYVDERLTVAGRTLI---YRQIENSFTQPNAGINV----HMLEWVLAATKGIQGD 212
           + L R+  +E + +   TL    ++  + S    N+G+ V     +L            +
Sbjct: 2   VFLSRNGENEEINMKSGTLKTKGFKFKQFSIASSNSGMPVSTDGVLLGAWADFHH--SQN 59

Query: 213 LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           LL++  G G  SL+ A+ +    + AV+I   ++EAA+ N                  F+
Sbjct: 60  LLDIGTGTGLLSLMCAQRYAHLSITAVDIDAHAMEAAQEN------------------FS 101

Query: 271 QAMRREREFNRLKDIDIHSY--RFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328
            +    R   +  D+   ++  RF  I  +PP     +      +A         + D+L
Sbjct: 102 HSPWHSRLHLQHGDVLKLNFTHRFDGIICNPPYFNSGEQAQATQRATAR------HTDTL 155

Query: 329 CRDLSIL 335
             D  +L
Sbjct: 156 AHDALLL 162


>gi|16763308|ref|NP_458925.1| hypothetical protein STY4856 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144786|ref|NP_808128.1| hypothetical protein t4550 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|25511954|pir||AB1066 conserved hypothetical protein STY4856 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505616|emb|CAD06975.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29140425|gb|AAO71988.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 542

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 52  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 110

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 111 ANL-NIDYIQQD 121


>gi|88797774|ref|ZP_01113362.1| hypothetical protein MED297_11500 [Reinekea sp. MED297]
 gi|88779451|gb|EAR10638.1| hypothetical protein MED297_11500 [Reinekea sp. MED297]
          Length = 259

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 42/196 (21%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
              +  +++ +    +G    +L++  G G  S+ LA     V+ V+ +   V+AAR   
Sbjct: 28  PQYSQAVIDILSDQGRGTSMSVLDIGSGTGEVSIPLADKGHSVIGVDPSAAMVKAARA-- 85

Query: 252 AANHVNNVKIVRMSSKEFT--QAMRREREFNRLKDIDIHSYRFKTIFVDPPRS------- 302
                +  + V    +EF+  Q        N +   D          +  P +       
Sbjct: 86  ---KGSTAEFVNSYIEEFSSNQRFDLLVAANSIHWPDWSVTFPLLKRLAKPHTKLAIVTG 142

Query: 303 ------GLDDATVGMVQAYPHILYISCNPDSLCRD------LSILSTTHTIERLALFDQF 350
                 G+ D  + ++Q Y           S  R+      + +L     I  +   D  
Sbjct: 143 GDLVVEGIKDDILQIIQKY-----------STTRNFKPYSIVKLLQEQGFISNVTAIDL- 190

Query: 351 PY---TRHM-ECGVLL 362
           P    T+H+ E     
Sbjct: 191 PGEALTQHIDEYVASF 206


>gi|321441967|gb|ADW85398.1| arg methyltransferase [Amauta cacica]
          Length = 244

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           +L++ CG G  S+  A+    +V+AVE +   V+ AR  I AN ++N ++IV+   +E 
Sbjct: 26  VLDIGCGTGILSMFAAKAGAAKVIAVECSNI-VDYARKIIEANRLDNIIEIVKGKVEEV 83


>gi|307198020|gb|EFN79080.1| Protein arginine N-methyltransferase 8 [Harpegnathos saltator]
          Length = 382

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 20/105 (19%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           +E L    RT+ YR                M              +L++ CG G  S+  
Sbjct: 73  EEMLKDEVRTVTYRNS--------------MY---HNKHLFKGKTVLDIGCGTGILSMFA 115

Query: 228 ARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEFT 270
           A+    RV+ +E +   VE A   + AN+++NV  I++   +E +
Sbjct: 116 AKAGAARVIGIECSNI-VEYAEKIVEANNLSNVITILKGKVEEVS 159


>gi|294507034|ref|YP_003571092.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
 gi|294343362|emb|CBH24140.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
          Length = 206

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 198 MLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
           +++ +L      + D+L +L  G+G   +  AR H  R + +EI    V+ AR N     
Sbjct: 60  VVDRMLELADVDETDVLYDLGSGDGRIVIRAARTHGARGVGIEIDPDLVKKARKNAKEAG 119

Query: 256 VNN-VKIVRMSSKE 268
           V + V+  +    E
Sbjct: 120 VADLVEFRQGDLFE 133


>gi|315501399|ref|YP_004080286.1| methyltransferase small [Micromonospora sp. L5]
 gi|315408018|gb|ADU06135.1| methyltransferase small [Micromonospora sp. L5]
          Length = 223

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 20/123 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
              +L         + G LL++ CG G  + VLA       V AV++ + +      N A
Sbjct: 69  TAVLLRKADLPAADVTGALLDIGCGFGPITCVLATVAPKATVWAVDVNERARALTTANAA 128

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                +                R    + L D       F  I+ +PP         G++
Sbjct: 129 RVGAADR--------------VRAVAPDELPD----DVTFAQIWSNPPIHIGKPELRGLL 170

Query: 313 QAY 315
             +
Sbjct: 171 LRW 173


>gi|282875417|ref|ZP_06284289.1| methyltransferase small domain protein [Staphylococcus epidermidis
           SK135]
 gi|281295774|gb|EFA88296.1| methyltransferase small domain protein [Staphylococcus epidermidis
           SK135]
          Length = 226

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
              +++L  GNG   L+LA    + +  +EI +  V  AR +   N +N+ + +  M  K
Sbjct: 28  NDKVMDLCSGNGVIPLLLAAKSTQPIEGIEIQEQLVSMARRSFKLNDLNDRLTMHHMDLK 87

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCN 324
           +  Q                   ++  +  +PP   ++       +A+    + I CN
Sbjct: 88  DVYQTF--------------QPAQYTLVTCNPPYFKMNQNHQHQKEAHKIARHEIMCN 131


>gi|261250006|ref|ZP_05942583.1| ribosomal RNA small subunit methyltransferase D [Vibrio orientalis
           CIP 102891]
 gi|260939510|gb|EEX95495.1| ribosomal RNA small subunit methyltransferase D [Vibrio orientalis
           CIP 102891]
          Length = 199

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 54/135 (40%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       +   L+L+ G+G       +R  + V  +E+   + +  + NIA
Sbjct: 46  VKETLFNWIAQDVP--RAKCLDLFAGSGGLGFEAASRQAEMVTLIELNPQAFKQLQTNIA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           +   +N++ V   +  + +                       +F+DPP R GL D TV +
Sbjct: 104 SLKSDNLQAVNSDALSYLKQ---------------PGTPHHVVFIDPPFRKGLLDETVSL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LESNGWLADDAMIYI 163


>gi|256545371|ref|ZP_05472734.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398932|gb|EEU12546.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Anaerococcus vaginalis ATCC 51170]
          Length = 263

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARY 249
                 +L  ++         +L++  G+G  SL L+++    +++ V+I+K +++ A  
Sbjct: 81  PRYETEILVDLIINDNSNNKKILDIGTGSGAISLALSKNLKDSKIIGVDISKNAIDLANE 140

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N    ++NNV+             +    F+ +++      +F  I  +PP
Sbjct: 141 NKIKLNINNVEF------------KESDIFSNIEE------KFDIIVSNPP 173


>gi|256821947|ref|YP_003145910.1| methyltransferase small [Kangiella koreensis DSM 16069]
 gi|256795486|gb|ACV26142.1| methyltransferase small [Kangiella koreensis DSM 16069]
          Length = 197

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           T+    L ++     F+  N      ML  +         + L+L CG G   + +A+  
Sbjct: 21  TLCDFPLQFKTTWGLFSPRNIDDGTIML--LKYMDIETTDNCLDLGCGYGALGITMAKQA 78

Query: 232 --DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
              + L V+    +V+ A  N   N V N  
Sbjct: 79  PQGQTLMVDKDFVAVDYANKNCELNGVTNAT 109


>gi|239627768|ref|ZP_04670799.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517914|gb|EEQ57780.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 318

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 83/288 (28%), Gaps = 43/288 (14%)

Query: 15  AEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRID 74
            E VD +  M     +  ++I  + P+              D     MF       + I 
Sbjct: 12  TEAVDLVSSMFDDIGIEGIEIEDNVPL-------------TDKETKGMF-------IDIL 51

Query: 75  YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWREC 134
             +P    I  +   +     ++ +L+     +D L+  ++    T+      D  W   
Sbjct: 52  PELPPDEGIAKVSFYLDDDADVKEILKNVEAGLDELSLFTNLGARTITAGETEDKDWINN 111

Query: 135 AIRLRDALHA----RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQP 190
             +            K   + I   +K K+ +  D      T    T             
Sbjct: 112 WKQYFKPFTVDHILIKPTWETIPEEHKDKLLVQIDPGTAFGTGMHET------------- 158

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARY 249
                  +    L         +L++  G+G   +  L      V   ++ + ++ A   
Sbjct: 159 -----TQLCIRQLEKRVDEDTLVLDVGTGSGILGITALKLGAKEVWGTDLDENAITAVGE 213

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           N+ AN ++  +   +          +E       DI + +     I +
Sbjct: 214 NLEANSISTDRFHVIQGNIIDDRSVKEWAGYDRYDIVVANILADVIIL 261


>gi|254524201|ref|ZP_05136256.1| methyltransferase GidB [Stenotrophomonas sp. SKA14]
 gi|219721792|gb|EED40317.1| methyltransferase GidB [Stenotrophomonas sp. SKA14]
          Length = 212

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 19/156 (12%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNI 251
           +  H+L+ +        G L +L  G G   + LA      +V  VE         R  +
Sbjct: 57  VTRHLLDSLAMQPFVADGSLADLGTGPGLPGIPLAIACPGLQVTLVESNGKKARFMREAV 116

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
               + N ++    ++   +A R ++   R  D      R     + P         + M
Sbjct: 117 RQLGLGNARVAESRAEALDEAGRYDQLTARAMDTLAGIVRVGGHLLRP-----GGVLLAM 171

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
              YPH             +++ L     +  +   
Sbjct: 172 KGVYPH------------EEIADLPEGWQVREVTPL 195


>gi|154494920|ref|ZP_02033925.1| hypothetical protein PARMER_03964 [Parabacteroides merdae ATCC
           43184]
 gi|154085470|gb|EDN84515.1| hypothetical protein PARMER_03964 [Parabacteroides merdae ATCC
           43184]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAAR 248
           N      M+  +L        +LL++ CG    ++ LA  +   RV+A++I + +   A 
Sbjct: 129 NHETTFLMISEILKLDL-TSKELLDMGCGTAVLAI-LAHMKGAGRVVAIDIDEWAYNNAL 186

Query: 249 YNIAANHVNNVKIVRMSSKEF 269
            NI  N+ N++++    +++ 
Sbjct: 187 ENIRLNNTNDIQVALGGAEQI 207


>gi|117164636|emb|CAJ88182.1| putative TDP-N-dimethyldesosamine-N-methyltransferase [Streptomyces
           ambofaciens ATCC 23877]
          Length = 244

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ++  ++         LL++ CG+G+     A  F  V  +++++  V+ AR N       
Sbjct: 33  LVTSLVRERLPEADSLLDVACGSGDHLARFAASFGHVEGLDLSEDMVQLARRN------T 86

Query: 258 NVKIVRMSSKEFT 270
            V + R   ++FT
Sbjct: 87  GVPVHRGDMRDFT 99


>gi|86751085|ref|YP_487581.1| Mg-protoporphyrin IX methyl transferase [Rhodopseudomonas palustris
           HaA2]
 gi|86574113|gb|ABD08670.1| magnesium protoporphyrin O-methyltransferase [Rhodopseudomonas
           palustris HaA2]
          Length = 233

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +L W+ A   G    LL+  CG G  S+  AR   +VLA++++   V  AR 
Sbjct: 52  LLSWLPADMTGT--RLLDAGCGTGALSIAAARRGAKVLAIDLSPTLVGVARE 101


>gi|78065060|ref|YP_367829.1| methyltransferase [Burkholderia sp. 383]
 gi|77965805|gb|ABB07185.1| Methyltransferase [Burkholderia sp. 383]
          Length = 377

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 3/120 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANH 255
             +E V  A         ++  G G  + VLA R  +RV+A +    ++  AR N+    
Sbjct: 185 EYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERVVATDQDARALACARENVERLG 244

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
             N   V     +   A R          +           V  P S +    +  + A+
Sbjct: 245 HANRVEVV--EADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLTGLAAH 302


>gi|21227980|ref|NP_633902.1| methyltransferase [Methanosarcina mazei Go1]
 gi|20906406|gb|AAM31574.1| methyltransferase [Methanosarcina mazei Go1]
          Length = 197

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 28/148 (18%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVE 245
            Q  + +   +L +       +   + +L CG G  ++  A+     +V+  +    ++E
Sbjct: 26  YQTPSLLAAEVLHFAY-MQGDLDDSVHDLGCGTGILAIG-AKVLGARKVVGYDTDPKALE 83

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR---- 301
            AR N     V+ V+ +     E ++                   R KT  ++PP     
Sbjct: 84  LARKNAEKIGVD-VEFICSDISEVSE-------------------RVKTTIMNPPFGARV 123

Query: 302 SGLDDATVGMVQAYPHILYISCNPDSLC 329
            G D   +        ++Y   N  SL 
Sbjct: 124 KGRDRPFLSSALRTSEVIYSIHNRGSLA 151


>gi|91978195|ref|YP_570854.1| Mg-protoporphyrin IX methyl transferase [Rhodopseudomonas palustris
           BisB5]
 gi|91684651|gb|ABE40953.1| magnesium protoporphyrin O-methyltransferase [Rhodopseudomonas
           palustris BisB5]
          Length = 233

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +L W+ A   G    LL+  CG G  S+  AR   +VLA++++   V  AR 
Sbjct: 52  LLSWLPADMTGT--RLLDAGCGTGALSIAAARRGAKVLAIDLSPTLVGVARE 101


>gi|332881259|ref|ZP_08448909.1| protein-(glutamine-N5) methyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332680635|gb|EGJ53582.1| protein-(glutamine-N5) methyltransferase [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 19/111 (17%)

Query: 195 NVHMLEWVLAATKGI---QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARY 249
              + EW++   K       D+L++  G+G  ++ L++     +V A++I+  ++  AR 
Sbjct: 83  TEELTEWIIQDEKASGFSSPDILDIGTGSGCIAITLSQELPQAQVSAIDISTQALAIARK 142

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           N               + +F     R ++       D  S  +  I  +PP
Sbjct: 143 NAERLGA---------AVDF-----RCQDILDSPSKDQDSPLWDIIVSNPP 179


>gi|324993678|gb|EGC25597.1| rRNA methylase [Streptococcus sanguinis SK405]
 gi|324995009|gb|EGC26922.1| rRNA methylase [Streptococcus sanguinis SK678]
 gi|325696334|gb|EGD38225.1| rRNA methylase [Streptococcus sanguinis SK160]
 gi|327490109|gb|EGF21897.1| rRNA methylase [Streptococcus sanguinis SK1058]
          Length = 183

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  ++   +
Sbjct: 6   QMAHAFLAEVVTKEDTVVDATMGNGHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLSEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +N +++    +   Q
Sbjct: 66  DNAQLILSGHESLDQ 80


>gi|321472577|gb|EFX83546.1| hypothetical protein DAPPUDRAFT_47829 [Daphnia pulex]
          Length = 261

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            L+++ CG G  +  L R   +V  +++   ++  A  +     ++ +     S ++F  
Sbjct: 75  RLMDVGCGGGLVTEPLCRMGAQVTGIDLVPQNIACAEEHALQQGLSLI-YKASSLEDFAA 133

Query: 272 AMRREREFNRLKDIDIHSYRFK 293
           +   E+ F+ +   ++  +   
Sbjct: 134 SSENEKAFDGVIAFEVIEHGPD 155


>gi|330921070|ref|XP_003299270.1| hypothetical protein PTT_10228 [Pyrenophora teres f. teres 0-1]
 gi|311327112|gb|EFQ92621.1| hypothetical protein PTT_10228 [Pyrenophora teres f. teres 0-1]
          Length = 296

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            + E VL   KG Q   ++L  G+G     LA  FD V+ ++ +   V  A+        
Sbjct: 24  ALYEKVLGYHKGQQRLCVDLGTGHGLIPRYLASSFDHVVGLDPSAGMVAEAKERSK--SF 81

Query: 257 NNVKIVRMSSKE 268
            N+K ++ S+++
Sbjct: 82  TNLKFMQSSAEK 93


>gi|295398772|ref|ZP_06808781.1| RsmD family RNA methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294972986|gb|EFG48804.1| RsmD family RNA methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 188

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           ++      +  +L+ Y G+G   +  ++R    V   E  + +    + N+AA  + +  
Sbjct: 35  IIGPYFDEETRVLDFYAGSGALGIEAISRGAAVVYGFEKNRQAQATIKENVAAVRIED-- 92

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
              + + +  +A+++ R+ ++         +F  +F+DPP  G
Sbjct: 93  QYVLKAGDNRKAIQQLRQADK-------DLQFDLVFLDPPYKG 128


>gi|204926899|ref|ZP_03218101.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204323564|gb|EDZ08759.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|196230059|ref|ZP_03128922.1| transcriptional regulator, TrmB [Chthoniobacter flavus Ellin428]
 gi|196225656|gb|EDY20163.1| transcriptional regulator, TrmB [Chthoniobacter flavus Ellin428]
          Length = 307

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           + +L  G G  S +LA+   +V+AV+ ++  VE        +   N++      +E
Sbjct: 148 IADLGAGEGTLSQLLAKRAKKVIAVDNSEKMVEFGSGLAKKHGFKNLEYRLGEMEE 203


>gi|189210231|ref|XP_001941447.1| hypothetical protein PTRG_11116 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187977540|gb|EDU44166.1| hypothetical protein PTRG_11116 [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 296

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            + E VL   KG Q   ++L  G+G     LA  FD V+ ++ +   V  A+        
Sbjct: 24  ALYEKVLGYHKGQQRLCVDLGTGHGLIPRYLASSFDHVVGLDPSAGMVAEAKERSK--SF 81

Query: 257 NNVKIVRMSSKE 268
            N+K ++ S+++
Sbjct: 82  TNLKFMQSSAEK 93


>gi|171780305|ref|ZP_02921209.1| hypothetical protein STRINF_02093 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281653|gb|EDT47088.1| hypothetical protein STRINF_02093 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 245

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L      +  LLEL CG G  S+  A+    V  +++++  +E AR         +++  
Sbjct: 29  LRHFPKDKKKLLELACGTGIQSVRFAKAGFDVTGLDLSEDMLEIARKRAKVAG-EDIEFK 87

Query: 263 RMSSKEFTQAMR 274
           + +  + +QA +
Sbjct: 88  QGNMLDLSQAGK 99


>gi|168698151|ref|ZP_02730428.1| hypothetical protein GobsU_01427 [Gemmata obscuriglobus UQM 2246]
          Length = 289

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +++++          +L+L CG G  +  L R F+ V+ ++ +   +E AR     +   
Sbjct: 76  LIKFLSDRHSIELRSVLDLACGTGLLTARLVRSFNEVVGLDASPRMLEVAR--ARLDGCK 133

Query: 258 NVKIVRMSSKEFT 270
               V    + F+
Sbjct: 134 GASFVFGDFRTFS 146


>gi|152990880|ref|YP_001356602.1| hypothetical protein NIS_1136 [Nitratiruptor sp. SB155-2]
 gi|151422741|dbj|BAF70245.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 387

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 14/106 (13%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           ++      +  +L+ +  +G F L  A +    V  V+I+  ++  A+ N   N V   K
Sbjct: 205 IVTKFMKQKERMLDCFSNSGGFGLYAASKKGADVEIVDISSQALALAKSNFRLNGVVG-K 263

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
            V  +  ++ + +R+++             +F T+ +DPP      
Sbjct: 264 FVEANVFDYLRELRKKK------------AKFDTVVLDPPSFAKSR 297


>gi|42781985|ref|NP_979232.1| UbiE/COQ5 family methlytransferase [Bacillus cereus ATCC 10987]
 gi|42737909|gb|AAS41840.1| methlytransferase, UbiE/COQ5 family [Bacillus cereus ATCC 10987]
          Length = 261

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + VLA  F  V+A+++ +  +E A+  I +N 
Sbjct: 31  QYVVQQVESRHNN---RLLDIATGGGHVANVLAPLFQEVVALDLTEKMLENAKNFIISNG 87

Query: 256 VNNVKIVRMSSKEF 269
             NV  V  +++  
Sbjct: 88  HENVSFVAGNAESL 101


>gi|311741861|ref|ZP_07715672.1| methyltransferase [Aeromicrobium marinum DSM 15272]
 gi|311314867|gb|EFQ84773.1| methyltransferase [Aeromicrobium marinum DSM 15272]
          Length = 212

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 4/114 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRV-LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             G +LEL+ G G+  L  AR   R+ + VEI + + + A  N     ++++  VR +  
Sbjct: 46  PPGPMLELFAGVGHIGLAAARRRGRILVQVEIDRWAAQFAHLNAETAGLSDLVEVRCAPV 105

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT--VGMVQAYPHIL 319
           E   A         L D           +   PR  +D     + +V+A   ++
Sbjct: 106 ESALAPDEAFPL-ILADPPWVDAELVHQYPADPRLCIDGGADGLQLVRAALEVI 158


>gi|288916556|ref|ZP_06410932.1| Methyltransferase type 12 [Frankia sp. EUN1f]
 gi|288351987|gb|EFC86188.1| Methyltransferase type 12 [Frankia sp. EUN1f]
          Length = 209

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+L CG G  ++ LA    +V AV+IA  ++E  R    A  V         ++  T 
Sbjct: 41  TALDLGCGEGGDAVWLAARGWQVTAVDIAPTALERVREAARAAGV---------AERVTP 91

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDP---PRSGLDDATVGMVQAYPHILYI 321
                R+                    P   PR  +  A    V A   +L +
Sbjct: 92  LC---RDLACGPPPGEFGLVVAMFLHSPVGMPRGEVLRAAAQRVAAGGTLLVV 141


>gi|262831180|sp|Q7MNQ4|TRMN6_VIBVY RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
          Length = 239

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 28/137 (20%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVK 260
             A      +LL++  G G  SL+ A+ +    + AV+I   ++EAA+ N          
Sbjct: 36  AWADFHHSQNLLDIGTGTGLLSLMCAQRYAHLSITAVDIDAHAMEAAQEN---------- 85

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSY--RFKTIFVDPPRSGLDDATVGMVQAYPHI 318
                   F+ +    R   +  D+   ++  RF  I  +PP     +      +A    
Sbjct: 86  --------FSHSPWHSRLHLQHGDVLKLNFTHRFDGIICNPPYFNSGEQAQATQRATAR- 136

Query: 319 LYISCNPDSLCRDLSIL 335
                + D+L  D  +L
Sbjct: 137 -----HTDTLAHDALLL 148


>gi|302529794|ref|ZP_07282136.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. AA4]
 gi|302438689|gb|EFL10505.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. AA4]
          Length = 288

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 13/109 (11%)

Query: 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              +LEW +   +G +   +++L  G+G  +L +A  R    V AV++   ++  AR+N 
Sbjct: 98  TELLLEWGVKFLQGREYPVVVDLCTGSGALALAVAHERPDAVVYAVDVDPQALAWARHNA 157

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +       +R+ S +          F  L  +         +  +PP
Sbjct: 158 DVHSAAGNTPIRLYSGDIAD----PTMFAELDGL------VDLVLCNPP 196


>gi|229099761|ref|ZP_04230686.1| Protein hemK [Bacillus cereus Rock3-29]
 gi|228683650|gb|EEL37603.1| Protein hemK [Bacillus cereus Rock3-29]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  +  
Sbjct: 102 VLERIERHFGNEKLHVADIGTGSGAISITLALENKNLHVYTVDIARESIEVAKENAKSLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYKIDQKLDVVVSNPP 190


>gi|227501695|ref|ZP_03931744.1| HemK family methytransferase [Corynebacterium accolens ATCC 49725]
 gi|227077720|gb|EEI15683.1| HemK family methytransferase [Corynebacterium accolens ATCC 49725]
          Length = 277

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 22/150 (14%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           T     L  +     F  P       M +W +         +++L  G+G  +L L  + 
Sbjct: 75  TAWFGPLELKVGPGVFI-PRPE-TEVMADWAV--HHAPGPRMVDLCSGSGALALYLQHYV 130

Query: 232 --DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS 289
               V AVE++  ++E  R N        V++V+  + + +QA+            D + 
Sbjct: 131 PQAEVKAVELSDAALEFTRANTLRTG---VEVVQADATD-SQALA-----------DWNG 175

Query: 290 YRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                +  +PP    D      V   PH+ 
Sbjct: 176 TV-DLVVSNPPYVPEDPNLQPEVYHDPHVA 204


>gi|224418719|ref|ZP_03656725.1| ribosomal protein L11 methyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|253826751|ref|ZP_04869636.1| ribosomal protein L11 methyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|313142238|ref|ZP_07804431.1| ribosomal protein L11 methyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|253510157|gb|EES88816.1| ribosomal protein L11 methyltransferase [Helicobacter canadensis
           MIT 98-5491]
 gi|313131269|gb|EFR48886.1| ribosomal protein L11 methyltransferase [Helicobacter canadensis
           MIT 98-5491]
          Length = 275

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            L         LL++ CG+G  S+   +    V   +  + +V A + N   N++N  K+
Sbjct: 135 ALNNLSLANKTLLDVGCGSGILSIAAKKSGAEVWCCDTDEIAVNATKENAQKNNLNLDKV 194

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
              S  + T             D+ I +     I   P
Sbjct: 195 FLGSIDKITDK-------KDYFDVVIANILADIIVALP 225


>gi|255556946|ref|XP_002519506.1| phosphoglycerate kinase, putative [Ricinus communis]
 gi|223541369|gb|EEF42920.1| phosphoglycerate kinase, putative [Ricinus communis]
          Length = 678

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 9/159 (5%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHV 256
           ++W        Q  ++++ CGNG F L +AR    +  L +EI K  V     ++  + +
Sbjct: 480 IDWSAVYHDPAQPLVVDIGCGNGMFLLGMARRKKDLNFLGLEINKKLVRRCLDSVHQSGI 539

Query: 257 NNVKIVRMSS----KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +N   +  ++    +    +   E     ++  +      +  +    RS L +A   ++
Sbjct: 540 SNGHFIATNATTTFRSIVSSYPGELVLVSIQCPNPDFNDPEHRWRMLQRS-LVEAVADLL 598

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALF-DQF 350
                +   S +  ++   +  L   +   RL L  DQF
Sbjct: 599 AHDGKVFLQS-DIKTVAVRMKELFLKYGRGRLMLVNDQF 636


>gi|294658209|ref|XP_460550.2| DEHA2F04224p [Debaryomyces hansenii CBS767]
 gi|202952960|emb|CAG88866.2| DEHA2F04224p [Debaryomyces hansenii]
          Length = 318

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 16/106 (15%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            +SF Q  +       E  L   K      L+L CG G  +  L    D V  ++++ P 
Sbjct: 22  PSSFYQILSKYATEGKESRLPLNKS-----LDLGCGTGVATYSLLNFVDDVTGIDVSPPM 76

Query: 244 VEAA---------RYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
           +E A         + N+     + +K    S++ F  +  RE E N
Sbjct: 77  IETAKSLIPERCEQMNVKDR--SRIKFKTGSAESFVSSGSREVEDN 120


>gi|254391998|ref|ZP_05007189.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326442910|ref|ZP_08217644.1| hypothetical protein SclaA2_17683 [Streptomyces clavuligerus ATCC
           27064]
 gi|197705676|gb|EDY51488.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 397

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFTQ 271
           + +L  G G  ++ LAR   RVLAV+    +   AR N  A  +  +  VR     E   
Sbjct: 99  VADLCSGIGGDAIALARAGIRVLAVDRDPLTASVARANARALGLTELIEVREADVTEVDT 158

Query: 272 AMRR------EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                      R   R +  D  SY     +          A + +    PH
Sbjct: 159 TAYDAVFVDPARRGGRGRIFDPESYSPPLSWAIASARTRPHAALKIAPGVPH 210


>gi|167629092|ref|YP_001679591.1| hypothetical protein HM1_0988 [Heliobacterium modesticaldum Ice1]
 gi|167591832|gb|ABZ83580.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 214

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +  ++       +  +LEL CG G   +V A     V   +    ++E A  N A N V 
Sbjct: 50  LAAYLWRQVDMQERQVLELGCGLGLSGIVAALKGAEVTQTDFIPAALELAGENAARNGVK 109

Query: 258 NVKIVR 263
             ++  
Sbjct: 110 TERVWA 115


>gi|121603685|ref|YP_981014.1| HemK family modification methylase [Polaromonas naphthalenivorans
           CJ2]
 gi|120592654|gb|ABM36093.1| [protein release factor]-glutamine N5-methyltransferase
           [Polaromonas naphthalenivorans CJ2]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 39/161 (24%)

Query: 176 RTLIYRQIENSFT----QPNAGI------NVHMLEWVLAATKGI----QGDLLELYCGNG 221
             L Y      F     Q +A +         ++EW LA  K         +L+L  G+G
Sbjct: 68  EPLAYIVGGKEFFGLALQVDARVLVPRPDTETLVEWSLAVLKAPGLMPPLKVLDLGTGSG 127

Query: 222 NFSLVLARHFD------RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
             +L +A          +V AV+ +  +++ AR N     +  V  +             
Sbjct: 128 AIALAIAHSLKATGREAQVTAVDASADALDVARENARRLGLA-VAFI------------- 173

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
             E + L+ ++    RF  I  +PP     D  +  +   P
Sbjct: 174 --ESSWLQGVN---GRFHLIASNPPYIASADPHLAALAHEP 209


>gi|323699823|ref|ZP_08111735.1| Methyltransferase type 11 [Desulfovibrio sp. ND132]
 gi|323459755|gb|EGB15620.1| Methyltransferase type 11 [Desulfovibrio desulfuricans ND132]
          Length = 238

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY---NIAAN 254
           +L+ VLA     +  +LE+ CG G F   L +    V  ++ +   + AAR    N A  
Sbjct: 27  LLQEVLAGWPRRKRKILEIGCGTGLFLETLYQMGLDVTGMDRSPEMIAAARKRFGNRAQL 86

Query: 255 HVNNVKIVRMSSKEFTQA-MRREREFNRLKDIDIH 288
           H+ + + +  S  EF  A +    EF    +  + 
Sbjct: 87  HLGHGENMPFSDNEFDYALLWSVLEFADNPEAMLA 121


>gi|322615670|gb|EFY12590.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618730|gb|EFY15619.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322621856|gb|EFY18706.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627581|gb|EFY24372.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322630887|gb|EFY27651.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637894|gb|EFY34595.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642256|gb|EFY38863.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643872|gb|EFY40420.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651050|gb|EFY47435.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656695|gb|EFY52983.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659880|gb|EFY56123.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322661910|gb|EFY58126.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666343|gb|EFY62521.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672762|gb|EFY68873.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676192|gb|EFY72263.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680676|gb|EFY76714.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684430|gb|EFY80434.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194233|gb|EFZ79430.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197378|gb|EFZ82518.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201504|gb|EFZ86568.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206018|gb|EFZ90980.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213030|gb|EFZ97832.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215402|gb|EGA00146.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219385|gb|EGA03870.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227689|gb|EGA11843.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228859|gb|EGA12988.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236530|gb|EGA20606.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239970|gb|EGA24017.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241984|gb|EGA26013.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247869|gb|EGA31806.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323251492|gb|EGA35363.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258142|gb|EGA41819.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323263715|gb|EGA47236.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265691|gb|EGA49187.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270136|gb|EGA53584.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|296333280|ref|ZP_06875733.1| hypothetical protein BSU6633_19392 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675216|ref|YP_003866888.1| hypothetical protein BSUW23_12705 [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149478|gb|EFG90374.1| hypothetical protein BSU6633_19392 [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413460|gb|ADM38579.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 247

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             +  +   +G +L+L CG G  S+ LA     V  +++++  +  A+  +++N    + 
Sbjct: 24  KWIETSLPEKGRILDLACGTGEISIRLAEKGFEVTGIDLSEEMLSYAQQKVSSNQP--IL 81

Query: 261 IVRMSSKEFT 270
            ++   +E T
Sbjct: 82  FLQQDMREIT 91


>gi|283784747|ref|YP_003364612.1| S-adenosylmethionine-dependent methyltransferase [Citrobacter
           rodentium ICC168]
 gi|282948201|emb|CBG87768.1| putative S-adenosylmethionine-dependent methyltransferase
           [Citrobacter rodentium ICC168]
          Length = 270

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ +LA     +  +L+   G G  ++ +A     V   +++   +  A+    A  V +
Sbjct: 34  LDRLLATFGAQKLRVLDAGGGEGQTAIKMAERGHHVTLCDLSGEMIARAQQAAEAKGVSD 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++ ++++    +    + 
Sbjct: 94  DMHFIQCAAQDVASHLESPVDL 115


>gi|282164174|ref|YP_003356559.1| putative methyltransferase [Methanocella paludicola SANAE]
 gi|282156488|dbj|BAI61576.1| putative methyltransferase [Methanocella paludicola SANAE]
          Length = 197

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 26/134 (19%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYN 250
           A +   +L +       +QG + +L CG G  ++        +++ ++    ++E A+ N
Sbjct: 30  AVVAAELLYFAY-MNGDLQGSVADLGCGTGVLAIGAGLLGTKKIIGIDSDIRALEIAKKN 88

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP----RSGLDD 306
            +   V+ +  V    ++F                     RF T+ ++PP      G D 
Sbjct: 89  ASQLDVD-IAWVCCDVRDFC-------------------GRFDTVVMNPPFGAQEKGNDR 128

Query: 307 ATVGMVQAYPHILY 320
             +         +Y
Sbjct: 129 PFLEKALEIGTAIY 142


>gi|260223319|emb|CBA33763.1| Protein-L-isoaspartate O-methyltransferase 2 [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 215

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           +LE+  G+G  + +LA    +VL +EI       AR N+A   +NNV +    
Sbjct: 94  VLEIGAGSGFMAALLAHRARQVLTLEIVPELAAFARSNLAQAGLNNVTVREAD 146


>gi|205355229|ref|YP_002229030.1| hypothetical protein SG4330 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205275010|emb|CAR40092.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326630388|gb|EGE36731.1| Methyltransferase type 11 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 543

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 53  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 111

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 112 ANL-NIDYIQQD 122


>gi|195124780|ref|XP_002006865.1| GI18358 [Drosophila mojavensis]
 gi|193911933|gb|EDW10800.1| GI18358 [Drosophila mojavensis]
          Length = 217

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 195 NVHMLEWVL--AATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNI 251
              +++W+L           +L+L CGNG F + LA   F R+  V+ +  ++E A    
Sbjct: 41  QQRIVDWLLKQENIDKKTARVLDLGCGNGMFLIALANEGFARLTGVDYSPKAIELAMGIA 100

Query: 252 AANHVN 257
               ++
Sbjct: 101 KDQALD 106


>gi|171913066|ref|ZP_02928536.1| ribosomal protein L11 methyltransferase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 282

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 21/151 (13%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAAR 248
             A +   ++++   + +G    +L+L  G+G  ++   +         +    +V  A+
Sbjct: 124 TTATVLRMLVDYA-KSKEGQPWTMLDLGTGSGVLAIAAEKLGASEAWGCDFDDKAVRVAQ 182

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
            N+  N   NV I      ++                   S R+  +  +     L+D  
Sbjct: 183 ENLVRNRTQNVVIEEADVLKWKP-----------------SRRWDCVAANLFYDILEDVF 225

Query: 309 VGMVQAYPH--ILYISCNPDSLCRDLSILST 337
             +V++     I+++S    +   D   L  
Sbjct: 226 PKIVKSMSKHSIVFVSGILRTQADDCLKLGE 256


>gi|166712499|ref|ZP_02243706.1| methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 280

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 13/134 (9%)

Query: 191 NAGINVHMLEWVL---AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           N  +   M   +    AAT  +   L++L CG G  +   AR    VLA + +   VE  
Sbjct: 39  NNALIQRMRTTLWDTVAATLPVGSRLIDLGCGTGLDAGEFARRGYSVLATDWSPAMVERT 98

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD-IDIHSYRFKTIFVDPPRSGLDD 306
           R+  A   +          +  T A    ++ +RL+   D     F  +   P    +  
Sbjct: 99  RHRAATQGLE---------ERLTAAHVGIQQLDRLEGSFDGMYSNFGPLNCAPDLPAVAA 149

Query: 307 ATVGMVQAYPHILY 320
               +++A   +++
Sbjct: 150 ECARLLRADGCLVF 163


>gi|159899628|ref|YP_001545875.1| 50S ribosomal protein L11 methyltransferase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|226710089|sp|A9B5V4|PRMA_HERA2 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|159892667|gb|ABX05747.1| ribosomal protein L11 methyltransferase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 321

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 70/197 (35%), Gaps = 15/197 (7%)

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
                + ++  +  SL      I+    + +   L A   Q     +Q ++ +  L   R
Sbjct: 26  GYNGGVAVEEAIIPSLDSPEYQIDTNKPVIVRTYLLANE-QAADAQTQIERGLWVLGMMR 84

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
            + D        + +   A  ++     R    +  +   +++     A   ++      
Sbjct: 85  PVGDL---QVKTIAEEDWANAWKEHYRTRRIGQRFVIVPSWLEYE--PAENDVVLNLDPG 139

Query: 186 -SF---TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIA 240
            +F     P   + + ++E +          +L+L CG+G  ++  A+    RVLA++  
Sbjct: 140 MAFGTGLHPTTQLCLELMELIEFNNT----TVLDLGCGSGILAVGAAKLGSQRVLALDTD 195

Query: 241 KPSVEAARYNIAANHVN 257
             +VEA   N   NH  
Sbjct: 196 PIAVEATAENARINHAE 212


>gi|3820553|gb|AAC84026.1| Mg protoporphyrin IX methyl transferase BchM [Heliobacillus
           mobilis]
          Length = 227

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 24/142 (16%)

Query: 194 INVHMLE-------WVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
               ++E        +L     I+G  L++  CG G  S   A     V  ++I++  ++
Sbjct: 39  AQQKLIEGRQAIHRCLLDWIGPIKGKRLIDAGCGAGLLSETFADQGAIVKGIDISQKMIQ 98

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A+        +N++       E +  +    E++ L  +D        + +  P S + 
Sbjct: 99  MAQN--RNQGRDNLEF------EVSDLLSACGEYDILVSMD--------VVIHYPLSDMP 142

Query: 306 DATVGMVQAYPHILYISCNPDS 327
                ++       YIS  P +
Sbjct: 143 KLLGHILSLTKERAYISFAPST 164


>gi|27262198|gb|AAN87380.1| magnesium-protoporphyrin-O-methyltransferase [Heliobacillus
           mobilis]
          Length = 230

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 24/142 (16%)

Query: 194 INVHMLE-------WVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
               ++E        +L     I+G  L++  CG G  S   A     V  ++I++  ++
Sbjct: 42  AQQKLIEGRQAIHRCLLDWIGPIKGKRLIDAGCGAGLLSETFADQGAIVKGIDISQKMIQ 101

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
            A+        +N++       E +  +    E++ L  +D        + +  P S + 
Sbjct: 102 MAQN--RNQGRDNLEF------EVSDLLSACGEYDILVSMD--------VVIHYPLSDMP 145

Query: 306 DATVGMVQAYPHILYISCNPDS 327
                ++       YIS  P +
Sbjct: 146 KLLGHILSLTKERAYISFAPST 167


>gi|62182926|ref|YP_219343.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62130559|gb|AAX68262.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322717428|gb|EFZ08999.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 543

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 53  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 111

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 112 ANL-NIDYIQQD 122


>gi|15898693|ref|NP_343298.1| hypothetical protein SSO1898 [Sulfolobus solfataricus P2]
 gi|284175874|ref|ZP_06389843.1| hypothetical protein Ssol98_14628 [Sulfolobus solfataricus 98/2]
 gi|13815158|gb|AAK42088.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261603182|gb|ACX92785.1| Methyltransferase type 11 [Sulfolobus solfataricus 98/2]
          Length = 190

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +++L CG G F+ VLAR    V A++  + ++   +  +    +NNV      +++   
Sbjct: 44  TIVDLGCGPGFFTTVLARMVKTVYAIDPDERAISKLKEKVQKLSLNNVIPYVAPAQKL-- 101

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                 EF R K ID   +    +       G       +++    + YIS
Sbjct: 102 ------EFIRDKSIDFV-FSNLMLCCTSDHDGALREIKRILKDSG-LAYIS 144


>gi|33866817|ref|NP_898376.1| Mg-protoporphyrin IX methyl transferase [Synechococcus sp. WH 8102]
 gi|33639418|emb|CAE08802.1| Possible magnesium protoprophyrin IX methyltransferase
           [Synechococcus sp. WH 8102]
          Length = 237

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 19/144 (13%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
            +L W+  + +  +    +  CG G+ SL LA      + A +I++   + A     A  
Sbjct: 56  EVLAWIKDSGELNEVSFCDAGCGVGSLSLPLAEMGAGSISASDISEAMAQEADRRARAAG 115

Query: 256 VNNVK--IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
           ++  K        +  + +               H+     +F+  P+   ++    +  
Sbjct: 116 LDMGKLNFFASDLESLSGSF--------------HTVCCLDVFIHYPQQPAEEMVKHLCS 161

Query: 314 AYPHILYISCNPDSLCRDLSILST 337
                L +S  P +L   L++L  
Sbjct: 162 LTEERLIVSFAPYTLL--LALLKG 183


>gi|88813318|ref|ZP_01128557.1| hypothetical protein NB231_07462 [Nitrococcus mobilis Nb-231]
 gi|88789490|gb|EAR20618.1| hypothetical protein NB231_07462 [Nitrococcus mobilis Nb-231]
          Length = 404

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 20/146 (13%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             L++ CG G   L LA  F     +  ++++ ++ AAR       + N+        +F
Sbjct: 222 KALDVGCGRGRIGLRLAELFPNSHFVGFDLSEDAIAAARQEATDRALTNIIFQAADLSDF 281

Query: 270 -----TQAMRREREFNRLKDID---------IHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
                T A      F+ + D             +     +++     G       +    
Sbjct: 282 HECAETGAYDWITTFDAIHDQAQPLNVLKGIHRALHGNGVYLMQDIKGSSQVQGNIGHPI 341

Query: 316 PHILY-IS---CNPDSLCRDLSILST 337
              LY +S   C   SL +D   L  
Sbjct: 342 GTFLYTVSCMHCMTVSLAQDGEGLGA 367


>gi|46109166|ref|XP_381641.1| hypothetical protein FG01465.1 [Gibberella zeae PH-1]
          Length = 378

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           ++LY G G F    AR   RVL  EI   SVE  R    AN  + V+IV+  
Sbjct: 196 VDLYAGIGYFVFSYARLGMRVLCWEINPWSVEGLRRGAMANRWS-VRIVQGD 246


>gi|330830395|ref|YP_004393347.1| biotin biosynthesis protein BioC [Aeromonas veronii B565]
 gi|328805531|gb|AEB50730.1| Biotin biosynthesis protein BioC [Aeromonas veronii B565]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDL--LELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            Q    +   +LEW+     G +  +  L+L CG G F   LA    +++ +++A   + 
Sbjct: 30  FQ--QEVGQALLEWMPDRLVGTELTVSGLDLGCGTGFFLPQLASRCHQLVGLDLAPGMLA 87

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQA 272
                 A    +  +++   +++   A
Sbjct: 88  Q----AALRG-SGARLLCGDAEQLPFA 109


>gi|313888904|ref|ZP_07822564.1| ribosomal protein L11 methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845077|gb|EFR32478.1| ribosomal protein L11 methyltransferase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 301

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 75/207 (36%), Gaps = 19/207 (9%)

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKIC--LDRDY----VDERLTVAGRTLIYRQ 182
               E A  L+  L+ +     LI   +         + Y    + E+L +      Y  
Sbjct: 69  PENMEDANNLKAELNEKNLGQCLIEEKDDEDWANNWKKYYKPLEIGEKLAIVPEWEAYDN 128

Query: 183 IENSFTQPNAGIN--------VHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDR 233
            +    + N G+          +M   +L        ++ ++ CG+G  ++  L     R
Sbjct: 129 DKRIVIKINPGMAFGTGTHESTYMCLELLERYVKKDDEIFDIGCGSGILAIAGLKLGAKR 188

Query: 234 VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
            LAV+I    ++A+  N   N++ + + I + +  +  +        N + +I +   + 
Sbjct: 189 ALAVDIDDKCIDASHENADLNNLEDKMDIKKGNLLDVVKGRADLIVSNIIAEIIVDEIKN 248

Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHIL 319
               +D    G    T G+++    ++
Sbjct: 249 LKNHMDK---GGIFITSGIIKERRKMV 272


>gi|288958806|ref|YP_003449147.1| ribosomal protein L11 methyltransferase [Azospirillum sp. B510]
 gi|288911114|dbj|BAI72603.1| ribosomal protein L11 methyltransferase [Azospirillum sp. B510]
          Length = 296

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           L   +G +   L++ CG+G  +L +A+ +   V AV+I   +V   R N A N    +  
Sbjct: 150 LKLPRGGRRGALDMGCGSGILALAMAKRWRVPVTAVDIDPEAVRVTRINAALNGQKGMIR 209

Query: 262 VRM 264
            + 
Sbjct: 210 AQG 212


>gi|284997415|ref|YP_003419182.1| methyltransferase FkbM family [Sulfolobus islandicus L.D.8.5]
 gi|284445310|gb|ADB86812.1| methyltransferase FkbM family [Sulfolobus islandicus L.D.8.5]
          Length = 244

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 211 GDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
             +L++  G G+  +  +      V+AVEI K  VE  R N+  N +NNV IV
Sbjct: 104 KRVLDIGAGIGDSPIYFSIAGAKEVVAVEIDKRKVELMRDNLKVNGINNVTIV 156


>gi|283783994|ref|YP_003363859.1| methyltransferase [Citrobacter rodentium ICC168]
 gi|282947448|emb|CBG86995.1| putative methyltransferase [Citrobacter rodentium ICC168]
          Length = 256

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 30/72 (41%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +       +      +L++ CG G+ S V A+  ++V+A +++   +E          + 
Sbjct: 33  LTRLAERLSSSPSARVLDMGCGAGHASFVAAQKVNQVVAYDLSAQMLEVVAQAAQERGLT 92

Query: 258 NVKIVRMSSKEF 269
           N+   +  ++  
Sbjct: 93  NIVTRQGYAESL 104


>gi|255728201|ref|XP_002549026.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240133342|gb|EER32898.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 311

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 16/95 (16%)

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
             SF Q         L   +     +  + ++L CG G  S  L      V+ ++++   
Sbjct: 22  PPSFYQI--------LSKYIQEPIPVS-NTIDLGCGTGVASYPLLNISHNVIGLDLSPNM 72

Query: 244 VEAAR----YNIAANHVNN---VKIVRMSSKEFTQ 271
           V+ A      N+    +N+   +K +R + ++F +
Sbjct: 73  VDTANSLISKNLEQLGINDTSRIKFIRGAVEDFVK 107


>gi|200387011|ref|ZP_03213623.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199604109|gb|EDZ02654.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|185177639|pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
           Methyltransferase
 gi|185177640|pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
           Methyltransferase
          Length = 336

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +++ + G G FS+   ++  ++ A++I   ++E  + NI  N + +
Sbjct: 199 VVDXFAGVGPFSIAC-KNAKKIYAIDINPHAIELLKKNIKLNKLEH 243


>gi|171912034|ref|ZP_02927504.1| hypothetical protein VspiD_12680 [Verrucomicrobium spinosum DSM
           4136]
          Length = 308

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 24/163 (14%)

Query: 147 YQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENS------FT-QPNAGINVHML 199
           Y  +L  R  ++   L  + V+E  TV    + Y     S      F  Q     N   +
Sbjct: 72  YWKRLDQRDKESPTWLWGETVEEPFTVLENGVTYEISFTSGYSQGIFLDQ---RDNRLAI 128

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +  LA T+     +L L+     FS+  A       +V+++   ++  + N+  N ++  
Sbjct: 129 KERLAQTEPGSQRVLNLFAYTCAFSVAAAAGGGIATSVDLSPTYLDWGKRNLQLNGMDPA 188

Query: 260 --KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               V+  + ++ QA  +               +++ + +DPP
Sbjct: 189 GHYFVKGDAFDWLQAFAK------------KGRKWQGVILDPP 219


>gi|55980410|ref|YP_143707.1| HemK family methyltransferase [Thermus thermophilus HB8]
 gi|55771823|dbj|BAD70264.1| methyltransferase, HemK family [Thermus thermophilus HB8]
          Length = 500

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAANH 255
           ++E  L         +L++  G G  +L L  A     V A E+   ++  AR N     
Sbjct: 106 LVELALGLPLPPAPRILDVGTGTGAIALALKRALPEAEVYATEVDPKALALARENAERLG 165

Query: 256 V 256
           +
Sbjct: 166 L 166


>gi|330506984|ref|YP_004383412.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328927792|gb|AEB67594.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 279

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 199 LEWVLAATK-GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +EW+ +    G    + +  CG G ++  LA+    V+ ++ +K S++ AR       + 
Sbjct: 56  VEWIASRFSIGADTRIADFGCGPGLYANRLAKVGASVIGIDFSKCSIKHAREAAREVGLT 115

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            ++ +  +  +F    R +     + D    S   + I +  
Sbjct: 116 -IEYINQNYLDFETEHRFDLILMIMCDFCALSPSQRRIMLAK 156


>gi|298244023|ref|ZP_06967830.1| rRNA (guanine-N(2)-)-methyltransferase [Ktedonobacter racemifer DSM
           44963]
 gi|297557077|gb|EFH90941.1| rRNA (guanine-N(2)-)-methyltransferase [Ktedonobacter racemifer DSM
           44963]
          Length = 342

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 19/101 (18%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           + A         L+L CG G   L +AR     +V  V+++  +V  +R   A   + NV
Sbjct: 189 LDALEVKPTDQALDLGCGAGFIGLHIARLATRGQVTMVDVSLAAVATSRQQAAEQGLTNV 248

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           +I+                        +++ +F  +  +PP
Sbjct: 249 RILPSDGARV-----------------VYTEQFDLVATNPP 272


>gi|316935281|ref|YP_004110263.1| magnesium protoporphyrin O-methyltransferase [Rhodopseudomonas
           palustris DX-1]
 gi|315602995|gb|ADU45530.1| magnesium protoporphyrin O-methyltransferase [Rhodopseudomonas
           palustris DX-1]
          Length = 233

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +L W+ A   G    LL+  CG G  S+  AR   +V+A++++   V  AR 
Sbjct: 52  LLSWLPADMTGT--RLLDAGCGTGALSIEAARRGAKVVAIDLSPTLVAVARE 101


>gi|268680820|ref|YP_003305251.1| PUA domain containing protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618851|gb|ACZ13216.1| PUA domain containing protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 390

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 98/307 (31%), Gaps = 47/307 (15%)

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQS 114
           G   +H       K+R  +        LI++   + +  + ++        QI+    ++
Sbjct: 73  GKKFFHNRIKNAIKKRESLLNVSNAVRLIHS-EADFLPGLIVDKYGENLAIQINTAGMEN 131

Query: 115 DQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVA 174
            + ++     + L+  W      L        Y  ++ G  +K             L   
Sbjct: 132 FRELIIGTLKQFLNPQWMVEKSDL--------YSREIEGLEDKNGTLFGEPCAQFELVEN 183

Query: 175 GRTLIYRQIE---NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARH 230
           G + +    +     F      ++      + A        +L+L C  G F +  L   
Sbjct: 184 GLSFLVDIEDAQKTGFY-----LDQRKNRQICANYIKEGDTVLDLCCNAGGFGIYALRAG 238

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
               + V++++ ++   + N+  N +    +       F +  + +  FN          
Sbjct: 239 AKECVFVDVSESAIAQTKANVERNELTCESLHVKDVFTFLKEQKYKNSFNM--------- 289

Query: 291 RFKTIFVDPPRSGLD-DATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQ 349
               + +DPP    + +  VG  + + H+               ++ +T  ++   L   
Sbjct: 290 ----VIIDPPSFAKNKEQAVGAKRGFKHL---------------LMESTKAVKNAGLIGF 330

Query: 350 FPYTRHM 356
           F  + H+
Sbjct: 331 FSCSHHV 337


>gi|226363544|ref|YP_002781326.1| cyclopropane fatty acid synthase [Rhodococcus opacus B4]
 gi|226242033|dbj|BAH52381.1| putative cyclopropane fatty acid synthase [Rhodococcus opacus B4]
          Length = 433

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q       +    V        GD LL++ CG G+     AR   +V+ V +++   E A
Sbjct: 184 QTLEEAQENKYRLVFEKLGLQPGDRLLDIGCGWGSMVRFAARRGVKVIGVTLSREQAEWA 243

Query: 248 RYNIAANHVNNVKIVRMS 265
           +  IA   ++++  VR S
Sbjct: 244 QKAIAEEGLSDLAEVRFS 261


>gi|261378754|ref|ZP_05983327.1| methyltransferase domain protein [Neisseria cinerea ATCC 14685]
 gi|269144909|gb|EEZ71327.1| methyltransferase domain protein [Neisseria cinerea ATCC 14685]
          Length = 367

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANH 255
             L+ +  A        L++  G+G  + +LA+     V+  +    +V  AR NIA   
Sbjct: 176 EYLDLLAQAPSTGFQTALDIGTGSGVLAAILAKQGISSVIGTDTNPRAVACARANIARLG 235

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +   K V +   +    MR +        +           +  P S +  A + 
Sbjct: 236 LE--KQVEIRETDMFPDMRADLIVCNPPWLPAKPTSAIESALYDPDSAMLTAFLR 288


>gi|212695384|ref|ZP_03303512.1| hypothetical protein BACDOR_04933 [Bacteroides dorei DSM 17855]
 gi|212662019|gb|EEB22593.1| hypothetical protein BACDOR_04933 [Bacteroides dorei DSM 17855]
          Length = 278

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 45/106 (42%), Gaps = 19/106 (17%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254
            +++W++   K  +  +L++  G+G  ++ L ++     V++ ++++ +++ A  N   N
Sbjct: 98  ELVDWIIREHKYGRVKILDIGTGSGCIAVSLTKNLEEAEVVSWDVSEKALQVAERNCRRN 157

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            V     V +  ++   A                  +F  I  +PP
Sbjct: 158 GVR----VTLEQRDVLLASPA-------------GEQFDVIVSNPP 186


>gi|254429795|ref|ZP_05043502.1| Methyltransferase domain family [Alcanivorax sp. DG881]
 gi|196195964|gb|EDX90923.1| Methyltransferase domain family [Alcanivorax sp. DG881]
          Length = 282

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVN- 257
             A        +L++ CG G  +  ++R+     +   V+I++  +EAAR     N    
Sbjct: 42  AEAVECQSPQRVLDIGCGTGGTTRAISRYTRGEGQATGVDISEVMIEAARQGTEKNGAEK 101

Query: 258 -NVKIVRMSSK 267
             V+ +   ++
Sbjct: 102 AGVEFICADAE 112


>gi|254426435|ref|ZP_05040151.1| Methyltransferase domain family [Synechococcus sp. PCC 7335]
 gi|196187849|gb|EDX82815.1| Methyltransferase domain family [Synechococcus sp. PCC 7335]
          Length = 206

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 31/68 (45%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V          +LE+ CG G+ +++ A +   + A++ +   +  A+    A H++NV  
Sbjct: 31  VTRDYFQPDWSVLEIGCGTGSTAILHAPYVKDIRAIDFSANMIAIAQAKAEAEHIDNVTF 90

Query: 262 VRMSSKEF 269
            +   ++ 
Sbjct: 91  EQAIIEDL 98


>gi|163940250|ref|YP_001645134.1| methyltransferase type 11 [Bacillus weihenstephanensis KBAB4]
 gi|163862447|gb|ABY43506.1| Methyltransferase type 11 [Bacillus weihenstephanensis KBAB4]
          Length = 236

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +++ ++       +G++LEL CG G  ++ LA+    V AV+++   +  A+     N 
Sbjct: 47  ENLVSYIQKEWI-SKGEVLELGCGPGRNAIYLAKQGLDVTAVDLSIEGINWAKERALENG 105

Query: 256 VNNVKIVRMS 265
           ++ ++ V  S
Sbjct: 106 ID-IQFVCES 114


>gi|167536306|ref|XP_001749825.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163771752|gb|EDQ85414.1| predicted protein [Monosiga brevicollis MX1]
          Length = 329

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 188 TQPNAGINVHMLEWVLAATKGI----QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
            Q +       +E   A           D+LE  CG G   L LA H   V  V+ +  +
Sbjct: 66  FQTDTAKEAAFIEGAAALFCTSRVQGPYDILEPGCGTGRLMLALAEHGHHVAGVDASATA 125

Query: 244 VEAARYNIAANHVNN 258
           +E  R  +  + +  
Sbjct: 126 LEFCRERLTQHGLTG 140


>gi|163816134|ref|ZP_02207502.1| hypothetical protein COPEUT_02318 [Coprococcus eutactus ATCC 27759]
 gi|158448554|gb|EDP25549.1| hypothetical protein COPEUT_02318 [Coprococcus eutactus ATCC 27759]
          Length = 684

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 95/265 (35%), Gaps = 18/265 (6%)

Query: 44  RMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIR--LEPLLR 101
           R +   ++   G    ++  D ++ + ++    M     I      M A +      LL 
Sbjct: 68  RNKG--YVSGKGFYDRYVSEDCESTDVVKKLAGMLAEQNICVTETAMRALLSDCALKLLV 125

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKIC 161
                 + L    D  +   ++  LLDD  ++    +   +      + +  +  K +  
Sbjct: 126 DIPETNEILREYIDGRLDVGVWSILLDDIIQDK-KEIETWISEHDDMLDISYKFQKGEDV 184

Query: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG--IQGDLLELYCG 219
           L        L ++ R +  R+   S+      I  +M+  +     G      +L+  CG
Sbjct: 185 LG------LLYMSVRDIGVRKAAGSYF-TPTEIVRNMIMDISQDLGGGLKGKKVLDPCCG 237

Query: 220 NGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVR--MSSKEFTQAMRR 275
            GNF +  +   D   + A +    SV+ AR+N+A   +   + V+     +   + +  
Sbjct: 238 TGNFLIQFSEDVDICNIHAFDTDMLSVQLARFNLALTRLAGRENVKAEGDIRTICENVEC 297

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPP 300
                + +D   ++  +  I  +PP
Sbjct: 298 RDFLAKSEDRISNTVNYDVIIGNPP 322


>gi|56416284|ref|YP_153359.1| hypothetical protein SPA4320 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197365208|ref|YP_002144845.1| hypothetical protein SSPA4011 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56130541|gb|AAV80047.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096685|emb|CAR62307.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|46447427|ref|YP_008792.1| hypothetical protein pc1793 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401068|emb|CAF24517.1| hypothetical protein pc1793 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 287

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 26/131 (19%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +  +L L+  +G  +L  A+    V  ++ +K  V  AR N A NH+ +   +R   ++ 
Sbjct: 115 KPRILNLFAYSGGSTLAAAKAGAAVCHLDASKGMVTWARENAALNHLEHA-PIRWIVEDV 173

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---------LDDATVGMVQAY----- 315
            + + RE +            R++ I +DPP  G         ++D    ++Q+      
Sbjct: 174 KKFLARELK---------RGSRYEGIILDPPSFGRGSKGELFKIEDEVTQLLQSCRDLLS 224

Query: 316 --PHILYISCN 324
             P  +  SC+
Sbjct: 225 ERPLFVMFSCH 235


>gi|22299056|ref|NP_682303.1| precorrin-6B methylase [Thermosynechococcus elongatus BP-1]
 gi|22295238|dbj|BAC09065.1| precorrin decarbocylase [Thermosynechococcus elongatus BP-1]
          Length = 200

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L ++  G G  ++  AR   R  V+A+E  +  V+  + N     V NV+IV   + +  
Sbjct: 47  LWDVGAGTGTIAVEAARLAKRGQVIAIERDEEVVDLIQRNCDRFGVKNVQIVAGLAPDCF 106

Query: 271 QAMRREREFNRLK 283
             +RR  +   L+
Sbjct: 107 PQLRRRPQRICLE 119


>gi|326402472|ref|YP_004282553.1| methyltransferase FkbM family protein [Acidiphilium multivorum
           AIU301]
 gi|325049333|dbj|BAJ79671.1| methyltransferase FkbM family protein [Acidiphilium multivorum
           AIU301]
          Length = 257

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 48/156 (30%), Gaps = 22/156 (14%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAA 247
           N  +       VL          ++L    G F+L  AR      RV AVE A   V A 
Sbjct: 26  NGTLPEQGSRAVLDKLLAPGDVFIDLGANVGLFTLAGARRVGPAGRVHAVEPAPDLVTAL 85

Query: 248 RYNIAANHVNNV----KIVRMSSKEFTQAMRRE--------REFNRLKDIDIHSYRFKTI 295
           R   A N + N          +++  T+              E   L  I +       +
Sbjct: 86  RLMTALNQIANCVTIHPFAAGAAEGETELFLAHTSGHNSLFAEEEGLAAIKVRLAPLDAL 145

Query: 296 F-----VDPPRSGLDDATVGMVQAYPHILYISCNPD 326
                 V   +  ++ A +  +     I  IS NP 
Sbjct: 146 IAPGATVSVVKIDVEGAELQALAGMARI--ISDNPQ 179


>gi|309810841|ref|ZP_07704642.1| methyltransferase small domain protein [Dermacoccus sp. Ellin185]
 gi|308435147|gb|EFP58978.1| methyltransferase small domain protein [Dermacoccus sp. Ellin185]
          Length = 517

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 18/89 (20%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             L+L  G G  +  LA H + ++A ++A  ++    +N A N ++ V+++  S  E   
Sbjct: 175 TALDLGTGCGVQAAHLAGHVEHIVASDLATRALAFVCFNAALNDLD-VEVLAGSMLE--- 230

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                          +   RF  I  +PP
Sbjct: 231 --------------PVAGRRFDLIVSNPP 245


>gi|260433755|ref|ZP_05787726.1| methyltransferase, UbiE/COQ5 family [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417583|gb|EEX10842.1| methyltransferase, UbiE/COQ5 family [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 198 MLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAA 253
           +L+ VL       G  +L++ CG G  ++  AR       VL  +I+ P ++ AR     
Sbjct: 35  VLDLVLERADLTPGLRVLDIGCGTGAGTVAAARAVGPDGHVLGADISAPFLDRARQRARD 94

Query: 254 NHVNNVKIVRMSS 266
             ++N       +
Sbjct: 95  LGLSNAAFRLADA 107


>gi|289209487|ref|YP_003461553.1| methyltransferase type 11 [Thioalkalivibrio sp. K90mix]
 gi|288945118|gb|ADC72817.1| Methyltransferase type 11 [Thioalkalivibrio sp. K90mix]
          Length = 367

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVL--AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG G     LA  + R     V+++  ++E AR    A+ + N++ V   +   
Sbjct: 185 RVLDVGCGRGRIIHRLATLYPRSHFTGVDLSTQAIEHARVEAKADGLTNLEFVEADAAAL 244


>gi|212702409|ref|ZP_03310537.1| hypothetical protein DESPIG_00425 [Desulfovibrio piger ATCC 29098]
 gi|212674070|gb|EEB34553.1| hypothetical protein DESPIG_00425 [Desulfovibrio piger ATCC 29098]
          Length = 397

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 25/136 (18%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN--HVNNVK 260
           AA      D+L+++C  G F    A    R V  ++ +  ++  A  N A N   +   K
Sbjct: 212 AARYAAGADVLDIFCYAGGFGGTAAAAGARSVTFLDASPQALALATENAARNAPELARTK 271

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-TVGMVQAYPHI- 318
            +     +          F RL ++D    RF  I +DPP            + AY  I 
Sbjct: 272 AIEGLCGD---------AFERLAELDAQGRRFSLICLDPPAFIKRRKDFAQGLAAYRKIN 322

Query: 319 -----------LYISC 323
                      +++SC
Sbjct: 323 ALAMQLLTPGGVFVSC 338


>gi|157372654|ref|YP_001480643.1| 50S ribosomal protein L11 methyltransferase [Serratia
           proteamaculans 568]
 gi|166989900|sp|A8GK75|PRMA_SERP5 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|157324418|gb|ABV43515.1| ribosomal protein L11 methyltransferase [Serratia proteamaculans
           568]
          Length = 293

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 29/198 (14%)

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICL--------DRDYV 167
           + +  L  H LL   +R    +L D    R++           ++ +        D D V
Sbjct: 68  EVVAMLEQHPLLGAGFRHKIEQLEDKDWEREWMDNFHPMRFGQRLWICPSWRDVPDPDAV 127

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV- 226
           +  L      L +       T P   + +  L+ +  A       +++  CG+G  ++  
Sbjct: 128 NVMLDP---GLAFGTG----THPTTALCLQWLDGLDLA----GKTIIDFGCGSGILAIAA 176

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           L     R + ++I   +++A+R N   N V         S+     + +++  + L D+ 
Sbjct: 177 LKLGAARAIGIDIDPQAIQASRDNAQRNGV---------SERLELYLPKDQPADLLADVV 227

Query: 287 IHSYRFKTIFVDPPRSGL 304
           + +     +    P  G 
Sbjct: 228 VANILAGPLRELAPLIGC 245


>gi|51892487|ref|YP_075178.1| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856176|dbj|BAD40334.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 459

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 28/171 (16%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           ERL    + LI  Q E+S           ML   +   +     ++++    G  +  LA
Sbjct: 236 ERLEAMKQGLITVQDESS-----------MLAAAVLNPQP-GWMVIDVAAAPGGKATHLA 283

Query: 229 ---RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRERE------- 278
               +  RV+A++I    V     N        V+ V + ++   +AM    +       
Sbjct: 284 ELMDNRGRVIALDIHPHKVALIEENAERLGTTIVEAVCLDARRVGEAMPERADAVLCDLP 343

Query: 279 ------FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
                   R  D            + P +  + ++    ++    ++Y +C
Sbjct: 344 CSGLGTLARRPDARWRKSPEDVEALVPIQRAILESAAKALKPGGVLVYSTC 394


>gi|32475734|ref|NP_868728.1| ribosomal RNA small subunit methyltransferase C [Rhodopirellula
           baltica SH 1]
 gi|32446277|emb|CAD76105.1| probable ribosomal RNA small subunit methyltransferase C
           [Rhodopirellula baltica SH 1]
          Length = 346

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 57/212 (26%), Gaps = 36/212 (16%)

Query: 136 IRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLT--VAGRTLIYRQIENSFTQPNAG 193
             L   +    +    +    K+ +       D   T  V  R L      + F+  +  
Sbjct: 135 QALGPKVRCHDHATGRVYSVRKSSVTFKPKNFDAEFTHRVDDRILTVHSRPSVFS--HRS 192

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
           ++      +  A       +LEL CGNG  ++  A         AV+    +V+      
Sbjct: 193 VDRAAAAMIRNAPIPEGSTVLELGCGNGAVAMAAAMRSKTGHAYAVDCNSRAVQCTERAA 252

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A N + N+  +   + E                            ++PP  G        
Sbjct: 253 AQNQIKNLTAIVNHNGELPNV-----------------PPCDIALLNPPYYGDFRIAEHF 295

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIER 343
           +              +  + L      + I +
Sbjct: 296 M-------------VTAAKKLRSGGEAYVITK 314


>gi|46201570|ref|ZP_00054798.2| COG0500: SAM-dependent methyltransferases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 218

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA----RHFDRVLAVEIAKPSVEAARYNIAANHV 256
             +AA +  +  +++L  G G F   LA        RV+ V++    +  AR N A   +
Sbjct: 25  QAIAAMRPGE-VVVDLGSGAG-FDAFLAVRQVGESGRVIGVDMTHEMLAKARANAAKLGL 82

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
            NV+      +    A            I++   +   +
Sbjct: 83  ANVEFRLGEIEHLPIADNTADVVISNCVINLSPDKPAVL 121


>gi|324329277|gb|ADY24537.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKIHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|320528066|ref|ZP_08029232.1| methyltransferase domain protein [Solobacterium moorei F0204]
 gi|320131692|gb|EFW24256.1| methyltransferase domain protein [Solobacterium moorei F0204]
          Length = 253

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 18/117 (15%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRV-------LAVEIAKPSVEAARYNIAANHVNNVK 260
              G  L++ CG+G  ++  A+               E A  S E    N  A  V N +
Sbjct: 84  PAGGSCLDVGCGSGALTIACAKRNPDALITGIDRWGKEYASFSQELCERNAMAEGVENTR 143

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
            +   +                 D    +     ++ + P     +  +  ++    
Sbjct: 144 FIHGDAVSL-----------NFPDESFDAVTSNYVYHNIPSKNRQEILLETLRVLKK 189


>gi|237711579|ref|ZP_04542060.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237725968|ref|ZP_04556449.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229435776|gb|EEO45853.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229454274|gb|EEO59995.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 278

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 45/106 (42%), Gaps = 19/106 (17%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254
            +++W++   K  +  +L++  G+G  ++ L ++     V++ ++++ +++ A  N   N
Sbjct: 98  ELVDWIIREHKYGRVKILDIGTGSGCIAVSLTKNLEEAEVVSWDVSEKALQVAERNCRRN 157

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            V     V +  ++   A                  +F  I  +PP
Sbjct: 158 GVR----VTLEQRDVLLASPA-------------GEQFDVIVSNPP 186


>gi|229118824|ref|ZP_04248173.1| Protein hemK [Bacillus cereus Rock1-3]
 gi|228664625|gb|EEL20118.1| Protein hemK [Bacillus cereus Rock1-3]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  +  
Sbjct: 102 VLERIERHFGNEKLHVADIGTGSGAISITLALENKNLHVYTVDIARESIEVAKENAKSLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYKIDQKLDVVVSNPP 190


>gi|303282445|ref|XP_003060514.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457985|gb|EEH55283.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 369

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 197 HMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAAN 254
             L  + A    ++G + L++ CG G  ++  AR    +V AVE +  + + AR  +  N
Sbjct: 37  AYLAAIEAHADELRGKVVLDVGCGTGILAMFAARAGARKVYAVEASGVA-KHARRIVKDN 95

Query: 255 HVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            ++  V+++R   ++  +    E+    L +   ++  F+++ 
Sbjct: 96  GLDGVVEVIRGRMEDIGEDEIVEKVDCVLSEWMGYALLFESML 138


>gi|222637134|gb|EEE67266.1| hypothetical protein OsJ_24443 [Oryza sativa Japonica Group]
          Length = 1083

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 23/198 (11%)

Query: 79  GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL 138
            S     +M E+++ +  +  L ++L +      ++   I+ L      D  W      L
Sbjct: 790 ASKTPQTIMRELVSVLLDKKGLPSQLLEQLPTRWETLGDIIVLPKTCFKDPLWESVRDDL 849

Query: 139 ----RDALHARKYQIQLIGRANKTK-----ICLDRDYVDERLTVAGRTLIYRQIENS--F 187
                 +L A++   Q     N T+     + +  D     LT     + Y        F
Sbjct: 850 WPLVAKSLGAQRLARQGKITPNGTRDSTLELLVGND---GWLTHHENGICYSLDATKCMF 906

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVEIAKPSV 244
           +  N        E +       + +++ +L+ G G F L   +  +   V A E    ++
Sbjct: 907 SSGNRS------EKLRMGKLDCRDEVVVDLFAGIGYFVLPFLVKANAKLVYACEWNPHAL 960

Query: 245 EAARYNIAANHVNNVKIV 262
           EA + N+  NHV +  I+
Sbjct: 961 EALQRNVMDNHVADRCII 978


>gi|218199710|gb|EEC82137.1| hypothetical protein OsI_26187 [Oryza sativa Indica Group]
          Length = 1083

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 23/198 (11%)

Query: 79  GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL 138
            S     +M E+++ +  +  L ++L +      ++   I+ L      D  W      L
Sbjct: 790 ASKTPQTIMRELVSVLLDKKGLPSQLLEQLPTRWETLGDIIVLPKTCFKDPLWESVRDDL 849

Query: 139 ----RDALHARKYQIQLIGRANKTK-----ICLDRDYVDERLTVAGRTLIYRQIENS--F 187
                 +L A++   Q     N T+     + +  D     LT     + Y        F
Sbjct: 850 WPLVAKSLGAQRLARQGKITPNGTRDSTLELLVGND---GWLTHHENGICYSLDATKCMF 906

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVEIAKPSV 244
           +  N        E +       + +++ +L+ G G F L   +  +   V A E    ++
Sbjct: 907 SSGNRS------EKLRMGKLDCRDEVVVDLFAGIGYFVLPFLVKANAKLVYACEWNPHAL 960

Query: 245 EAARYNIAANHVNNVKIV 262
           EA + N+  NHV +  I+
Sbjct: 961 EALQRNVMDNHVADRCII 978


>gi|222111381|ref|YP_002553645.1| type 11 methyltransferase [Acidovorax ebreus TPSY]
 gi|330825940|ref|YP_004389243.1| type 11 methyltransferase [Alicycliphilus denitrificans K601]
 gi|221730825|gb|ACM33645.1| Methyltransferase type 11 [Acidovorax ebreus TPSY]
 gi|329311312|gb|AEB85727.1| Methyltransferase type 11 [Alicycliphilus denitrificans K601]
          Length = 190

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 18/139 (12%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSV 244
           SF           +E +L     + G+++E   G G+F++  AR    +V A++I    V
Sbjct: 16  SFFDT-----EVAVERLL--GPRVDGNVIEFGSGYGSFTVPAARRTTGQVTALDIEPEMV 68

Query: 245 EAARYNIAANHVNNVK-----IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +  R    A H++N+K      V   ++  T +      FN L     H  +   +  + 
Sbjct: 69  DCVRQKALAGHLDNIKAQVRDFVADGAEVATGSQAHAMIFNLL-----HLEQPVELLREA 123

Query: 300 PRSGLDDATVGMVQAYPHI 318
            R+  +   + ++     I
Sbjct: 124 RRTMKEGGVLSVIHWRSDI 142


>gi|260822831|ref|XP_002606805.1| hypothetical protein BRAFLDRAFT_82444 [Branchiostoma floridae]
 gi|229292149|gb|EEN62815.1| hypothetical protein BRAFLDRAFT_82444 [Branchiostoma floridae]
          Length = 270

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 14/138 (10%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVE 245
           Q N+  +   +E +        GD +L+  CG G     +++      V+  +++   + 
Sbjct: 11  QNNSLQHGVGVEVLQQYMTWEGGDAVLDAGCGTGELCSYISKQPGVASVVGFDLSPDFIS 70

Query: 246 AARYNIAANHVNNVKIVRMSSKEFTQAMRRER-EFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AR N   N   NV+     + + +      R  F+++    +  +              
Sbjct: 71  YARTN---NSSPNVRYHVADAADPSTIKPEWRGAFSKVVSFFVLHWVKDKATALK----- 122

Query: 305 DDATVGMVQAYPHILYIS 322
             A    ++    I+++ 
Sbjct: 123 --ALNSCLKPGGEIVFVC 138


>gi|195392497|ref|XP_002054894.1| GJ22549 [Drosophila virilis]
 gi|194152980|gb|EDW68414.1| GJ22549 [Drosophila virilis]
          Length = 466

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 17/106 (16%)

Query: 202 VLAATKGIQGDLL-ELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-V 259
                + + GD++ + +CG G  ++  A    RV+A++I    +  A+ N     V + +
Sbjct: 288 AKQTARRLAGDVIVDAFCGCGGNAIQFANTCSRVIAIDIDANKLAMAKQNALIYGVAHKI 347

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           + V     +F  + R                R   +F+ PP  G D
Sbjct: 348 EFVHADFLQFASSTR---------------LRPDVVFLSPPWGGPD 378


>gi|118498112|ref|YP_899162.1| HemK family modification methylase [Francisella tularensis subsp.
           novicida U112]
 gi|194323338|ref|ZP_03057122.1| methyltransferase, HemK family [Francisella tularensis subsp.
           novicida FTE]
 gi|118424018|gb|ABK90408.1| modification methylase, HemK family [Francisella novicida U112]
 gi|194322702|gb|EDX20182.1| methyltransferase, HemK family [Francisella tularensis subsp.
           novicida FTE]
          Length = 284

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKI 160
           AK  Q D  T    Q I+  +        +     +L ++ L     +I  +        
Sbjct: 15  AKFNQFDISTKHDLQMIICDVLGVDKTYLYINSDKQLDKNTLKKIDEKILRLLAGEPLAY 74

Query: 161 CLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
            L  + + +++L V   TLI R                ++  VL   +     L  L+L 
Sbjct: 75  ILGYKYFWNQKLYVTKDTLIPR-----------ADTETVVATVLDDIQNKDAQLKILDLG 123

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G G  +L LA      +V+AV++ + S++ A+ N  AN++ NVK ++ S          
Sbjct: 124 TGTGAIALALAAELANSQVVAVDLYQQSLDVAKKNAQANNITNVKFIQSS---------- 173

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                     ++ + +F  I  +PP   L D  +  
Sbjct: 174 -------WYTNLDTDKFDIIVSNPPYIDLADTNIDQ 202


>gi|118463475|ref|YP_882748.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium avium 104]
 gi|118164762|gb|ABK65659.1| thiopurine S-methyltransferase (tpmt) superfamily protein
           [Mycobacterium avium 104]
          Length = 250

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A   ++G++L+   G G+ ++  A        ++ +  ++E AR N     V+ V   
Sbjct: 44  LVALGAVKGEVLDPGTGPGHHAIYYASQGFSATGIDGSAAAIERARANARTAGVS-VNFE 102

Query: 263 RMSSKEF 269
              + + 
Sbjct: 103 LADATKL 109


>gi|75152372|sp|Q8H4D4|TYW23_ORYSJ RecName: Full=tRNA wybutosine-synthesizing protein 2/3/4; Includes:
           RecName: Full=tRNA wybutosine-synthesizing protein 3
           homolog; Includes: RecName: Full=tRNA wybutosine
           synthesizing protein 2 homolog
 gi|23616996|dbj|BAC20692.1| MET-10+related protein-like [Oryza sativa Japonica Group]
          Length = 1043

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 23/198 (11%)

Query: 79  GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL 138
            S     +M E+++ +  +  L ++L +      ++   I+ L      D  W      L
Sbjct: 750 ASKTPQTIMRELVSVLLDKKGLPSQLLEQLPTRWETLGDIIVLPKTCFKDPLWESVRDDL 809

Query: 139 ----RDALHARKYQIQLIGRANKTK-----ICLDRDYVDERLTVAGRTLIYRQIENS--F 187
                 +L A++   Q     N T+     + +  D     LT     + Y        F
Sbjct: 810 WPLVAKSLGAQRLARQGKITPNGTRDSTLELLVGND---GWLTHHENGICYSLDATKCMF 866

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLV--LARHFDRVLAVEIAKPSV 244
           +  N        E +       + +++ +L+ G G F L   +  +   V A E    ++
Sbjct: 867 SSGNRS------EKLRMGKLDCRDEVVVDLFAGIGYFVLPFLVKANAKLVYACEWNPHAL 920

Query: 245 EAARYNIAANHVNNVKIV 262
           EA + N+  NHV +  I+
Sbjct: 921 EALQRNVMDNHVADRCII 938


>gi|328883328|emb|CCA56567.1| methyltransferase [Streptomyces venezuelae ATCC 10712]
          Length = 222

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A   G  G +L++ CG G  +  LA     V  V+++   +E    N    H    + 
Sbjct: 50  AFADAVGGLGPVLDVGCGPGTVTAYLAERGLDVSGVDLSPRMIE----NARRLH-PQCRF 104

Query: 262 VRMSSKEFTQA 272
              S+ +   A
Sbjct: 105 DVASATDLDLA 115


>gi|320353479|ref|YP_004194818.1| methyltransferase small [Desulfobulbus propionicus DSM 2032]
 gi|320121981|gb|ADW17527.1| methyltransferase small [Desulfobulbus propionicus DSM 2032]
          Length = 261

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 199 LEWVLAATKGIQ---GDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAA 253
           ++ VLAA          LL+L CG G   L+LA       V+++E+ +        N   
Sbjct: 40  VDAVLAAHFAAPRAGERLLDLGCGCGVIGLILAHRHAHIAVVSLELQEELAALTEENSRL 99

Query: 254 NHV-NNVKIVRMSSKEFTQAMRRE 276
           N   + +++VR   +   + +  E
Sbjct: 100 NGFGDRLRVVRGDVRTVGEVLPPE 123


>gi|268608149|ref|ZP_06141876.1| precorrin-6x reductase [Ruminococcus flavefaciens FD-1]
          Length = 397

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 214 LELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            ++ CG G+ S+ +A      RV AV+    +++  + N    H +N++ +   + +  +
Sbjct: 248 WDIGCGTGSVSVEMAMRCTDGRVYAVDNNSDAIDLTKQNSVNFHCDNIESIFGDASDVIK 307

Query: 272 AMRRER 277
           A+    
Sbjct: 308 ALPAPD 313


>gi|291613072|ref|YP_003523229.1| methyltransferase type 12 [Sideroxydans lithotrophicus ES-1]
 gi|291583184|gb|ADE10842.1| Methyltransferase type 12 [Sideroxydans lithotrophicus ES-1]
          Length = 931

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 196 VHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
             +LE +        + D+L+L CG G F + +A    +++ V+++   +E AR      
Sbjct: 374 RKLLESISHHPPNADKWDVLDLGCGTGLFGVEVAPFAKQLVGVDLSSKMLEQARARKLYQ 433

Query: 255 HVNNVKIVRM------SSKEFTQAMRREREFNRLKDIDIHSYR 291
            +    +V M      +S +   A        +L D+   + R
Sbjct: 434 RLEQADLVTMMQGEPAASFDVIVAADVFVYLGKLDDVIAEAGR 476


>gi|237738115|ref|ZP_04568596.1| methyltransferase [Fusobacterium mortiferum ATCC 9817]
 gi|229419995|gb|EEO35042.1| methyltransferase [Fusobacterium mortiferum ATCC 9817]
          Length = 245

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 21/146 (14%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVK 260
            A       ++++L  GNG   L L++    ++  +EI   S   A+ NI  N++   ++
Sbjct: 39  FATITRTTKNIIDLGTGNGVIPLFLSKKTKAKITGIEIQSISSALAKRNIELNNLQEQIE 98

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS---GLDDATVGMVQAYPH 317
           I+    K + +  R+                F  +  +PP     G +     + Q    
Sbjct: 99  IINDDMKNWNKYFRKGY--------------FDLVVTNPPFFRFHGEEKQLNDLDQLSLA 144

Query: 318 ILYISCNPDSLCRDLSIL--STTHTI 341
              IS N +SL    S L     + +
Sbjct: 145 RHEISINLNSLIETASNLLKDKGYFV 170


>gi|167565750|ref|ZP_02358666.1| putative methyltransferase [Burkholderia oklahomensis EO147]
          Length = 362

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 74/281 (26%), Gaps = 46/281 (16%)

Query: 68  KERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQ----SDQAIVTLIY 123
             R+  D        +              P+ R    Q    +      ++  +V    
Sbjct: 2   HSRIAFDT-AAACRSLAQSQWPSWRRDAGPPITRGGFAQRLRPSGTGAVLTNARVVAGRS 60

Query: 124 HRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQI 183
            R       +      DAL       Q       +K  L    ++ R       ++    
Sbjct: 61  RRADAHRTNDMRHATPDALPRSTANRQEEIERTMSKYVLGHSPIELRRLDFQSEML---- 116

Query: 184 ENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIA 240
                     I   +LE            +L++ CG G  S++ A        V+A++ +
Sbjct: 117 --------KPITRRLLESARLR---PSMRVLDIGCGTGGVSMLAAEMVGPTGTVVAIDQS 165

Query: 241 KPSVEAARYNIAANHVNNVKIVRMS--------------SKEFTQAMRREREFNRLKDID 286
             +++AA  N     ++N++                   ++          EF R     
Sbjct: 166 DIAIDAATANAERARLHNIRFRACGLDQVEGVHSFDVVIARCVLMHQLHVAEFIRHAARF 225

Query: 287 IHSYRFKTI---------FVDPPRSGLDDATVGMVQAYPHI 318
           +    F               PP +  D   + ++     +
Sbjct: 226 VKPGGFIAFHEPDFLRKPMSMPPINLWDSVAMEILDRCKRM 266


>gi|220917590|ref|YP_002492894.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955444|gb|ACL65828.1| Methyltransferase type 11 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 296

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
            +L++ CG G+ +++LA H  RV AV+++  S+E AR   A   +    + V    +
Sbjct: 65  RILDVGCGLGDNAILLASHGARVTAVDLSARSIELARRRAAQAGLAEPPEFVCAPLE 121


>gi|157273459|gb|ABV27358.1| SAM-dependent methyltransferase [Candidatus Chloracidobacterium
           thermophilum]
          Length = 425

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 15/172 (8%)

Query: 160 ICLDRDY----VDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLE 215
           +   RD+    V E        + + Q    F          M   V     G    +L 
Sbjct: 205 LIYGRDFGPLVVTEYGLRFHVDIKHGQKTGLFL-----DQREMRALVERLCTGR--RVLN 257

Query: 216 LYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH--VNNVKIVRMSSKEFTQA 272
            +   G FSL   R    RV++V+ +  +++ A+ N A N   V +   V      + + 
Sbjct: 258 GFAYTGGFSLYAHRGRAQRVVSVDSSGSALKLAQSNHALNGFSVTDDDFVEADMFTYLRR 317

Query: 273 M-RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISC 323
           +     +F  L    +   R   +        L+   +  V     +L  SC
Sbjct: 318 LEAAAFDFIILDPPALARKREDVLRAGRAYKDLNRLAIAKVAPGGLVLTSSC 369


>gi|91786751|ref|YP_547703.1| HemK family modification methylase [Polaromonas sp. JS666]
 gi|91695976|gb|ABE42805.1| [protein release factor]-glutamine N5-methyltransferase
           [Polaromonas sp. JS666]
          Length = 287

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 25/124 (20%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR------HFDRVLAVEIAKPSVEAARYNIA 252
           LE + A     +  +L+L  G+G  +L +A          RV+AV+ +  ++  AR N  
Sbjct: 109 LEVLQAPAMTERPQILDLGTGSGAIALAIAHSLQAAGRPARVVAVDASAGALAVARENAR 168

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              +                   E EF++   +D     F  I  +PP     D  +  +
Sbjct: 169 RLQL-------------------ELEFSQSNWLDEVGGHFHLIASNPPYIASADPHLVAL 209

Query: 313 QAYP 316
              P
Sbjct: 210 AHEP 213


>gi|25027996|ref|NP_738050.1| hypothetical protein CE1440 [Corynebacterium efficiens YS-314]
 gi|259506388|ref|ZP_05749290.1| N6-adenine-specific methylase [Corynebacterium efficiens YS-314]
 gi|23493279|dbj|BAC18250.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166029|gb|EEW50583.1| N6-adenine-specific methylase [Corynebacterium efficiens YS-314]
          Length = 202

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L+ G+G   L   +R  D V+ VE    + +  R N    +  +V +V M +  +  
Sbjct: 49  VLDLFAGSGALGLEAASRGADEVVLVESHSKAAQIIRANAGVVNHPDVHVVEMKASTYLA 108

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                               F  +  DPP    D++ V M+ A
Sbjct: 109 T--------------APDAHFTMVLADPPYELADESVVEMLHA 137


>gi|329116075|ref|ZP_08244792.1| methyltransferase small domain protein [Streptococcus parauberis
           NCFD 2020]
 gi|326906480|gb|EGE53394.1| methyltransferase small domain protein [Streptococcus parauberis
           NCFD 2020]
          Length = 199

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 15/95 (15%)

Query: 170 RLTVAGRTLIYRQIENSFTQPNAGINVHMLEW-----VLAATKGIQGDLLELYCGNGNFS 224
           R+++ G T  +      F+         M+++     +          +L+L CG G   
Sbjct: 20  RVSLLGATFTFLTDAGVFS-------KKMIDYGSQVLLSTLYFHPGDKVLDLGCGYGPLG 72

Query: 225 LVLARHFDRVLA--VEIAKPSVEAARYNIAANHVN 257
           + LA+   +V A  V+I   +++ ++ N   N V 
Sbjct: 73  ISLAK-VQKVDATMVDINNRAIDLSQKNAERNGVT 106


>gi|325267944|ref|ZP_08134593.1| type 11 methyltransferase [Kingella denitrificans ATCC 33394]
 gi|324980630|gb|EGC16293.1| type 11 methyltransferase [Kingella denitrificans ATCC 33394]
          Length = 201

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V          +LE+ CG G FS  LA+     R++A +I    +  A   +   H+ NV
Sbjct: 42  VQRLHLAPHHRILEVGCGAGYFSPTLAQSIPQGRLVAADIQPEMLAYAEKRLRRRHIGNV 101

Query: 260 KIVRMSSKEF 269
                    F
Sbjct: 102 DYYLCDGTHF 111


>gi|323704199|ref|ZP_08115778.1| ribosomal protein L11 methyltransferase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536265|gb|EGB26037.1| ribosomal protein L11 methyltransferase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 308

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L         + ++ CG G  S+V ++    +V AV++ + +++ A  N+  
Sbjct: 159 TTKMCIEFLEDNVKSGDTVFDVGCGTGILSIVSSKLGAKKVFAVDVDEVALKVASLNVKL 218

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290
           N ++N+++++    +           N + DI I + 
Sbjct: 219 NKLDNIEVLKSDLLKELNGEADLIVANIIADIIIKAT 255


>gi|323139324|ref|ZP_08074376.1| Methyltransferase type 11 [Methylocystis sp. ATCC 49242]
 gi|322395390|gb|EFX97939.1| Methyltransferase type 11 [Methylocystis sp. ATCC 49242]
          Length = 285

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 212 DLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            +L++ CG+G  +L  A       +V+AV++A+  V+       A  + N++      
Sbjct: 62  TVLDVCCGSGGSALPAAEAVGPQGKVVAVDLAERLVQLGEAKALAMGLRNIEFKTGDM 119


>gi|320547432|ref|ZP_08041719.1| methyltransferase [Streptococcus equinus ATCC 9812]
 gi|320447909|gb|EFW88665.1| methyltransferase [Streptococcus equinus ATCC 9812]
          Length = 245

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L      +  LLEL CG G  S+  A+    V  +++++  +E AR    A     ++  
Sbjct: 29  LRHFPKDKKKLLELACGTGIQSVRFAKAGFDVTGLDLSEDMLEIARKRAEAAG-EAIEFK 87

Query: 263 RMSSKEFTQAMR 274
           + +  + +QA +
Sbjct: 88  QGNMLDLSQAGK 99


>gi|319936833|ref|ZP_08011245.1| hypothetical protein HMPREF9488_02079 [Coprobacillus sp. 29_1]
 gi|319808101|gb|EFW04673.1| hypothetical protein HMPREF9488_02079 [Coprobacillus sp. 29_1]
          Length = 275

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 24/120 (20%)

Query: 148 QIQLIGRANKTKICLDRDYV---------DERLTVAGRTLIYRQIENSFTQPNAGINVHM 198
           Q++            D DYV         DE L  A R + +          N  +N   
Sbjct: 9   QVKPKLYEKTQYNIWDNDYVSKGMLQAHLDESLDSASRNIKF---------VNKSVN--- 56

Query: 199 LEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
             W+       +  +LL+L CG G ++         V  ++I+K S+  A+ +   N++N
Sbjct: 57  --WISELFPPTKYHNLLDLGCGPGIYTERFYNRGYYVTGIDISKRSIMYAKQSAMKNNMN 114


>gi|330927282|ref|XP_003301816.1| hypothetical protein PTT_13408 [Pyrenophora teres f. teres 0-1]
 gi|311323199|gb|EFQ90090.1| hypothetical protein PTT_13408 [Pyrenophora teres f. teres 0-1]
          Length = 504

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 48/200 (24%)

Query: 83  INALMIEMMATIRLEPLLR--AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD 140
           I+  + ++++   L P+L   A LF++  L   SD+  +           + E   +++ 
Sbjct: 90  ISVTLDDLISDKYLHPVLEDDALLFELGDLMPDSDEKAI----------DYDEYEAKMQK 139

Query: 141 ALHARKYQIQLIGRANKTKICLDRDYVD---------ERLTVAGRTLIYRQIENSFTQPN 191
            +     +I+L+          D+DY +         E +    RT  YR     F + N
Sbjct: 140 DMPEDFSKIKLVNDR-------DQDYFESYKGNSIHREMIEDRVRTEGYR----DFIEKN 188

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYN 250
           A I                  +L++ CG G  SL  AR    +V AV+ +   V  A+  
Sbjct: 189 AEIFA-------------GKTVLDVGCGTGILSLFCARAGAKKVFAVDNSGI-VTRAKEI 234

Query: 251 IAANHV-NNVKIVRMSSKEF 269
           IA N   + +++V+   ++F
Sbjct: 235 IAKNGFQDRIEVVQGRVEDF 254


>gi|325108529|ref|YP_004269597.1| methyltransferase small [Planctomyces brasiliensis DSM 5305]
 gi|324968797|gb|ADY59575.1| methyltransferase small [Planctomyces brasiliensis DSM 5305]
          Length = 227

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           M + V AA    Q  +LEL CG+G   L        V   +    +++ + YN   N   
Sbjct: 65  MAQRVAAAEWPKQTRVLELGCGSGLIGLAALAAGMHVTFSDNRPEALQLSGYNAEQNGFE 124

Query: 258 NVKIVRMS 265
           N  +  + 
Sbjct: 125 NFDVALLD 132


>gi|300724039|ref|YP_003713354.1| N5-glutamine methyltransferase [Xenorhabdus nematophila ATCC 19061]
 gi|297630571|emb|CBJ91236.1| N5-glutamine methyltransferase, modifies ribosomal protein L3
           [Xenorhabdus nematophila ATCC 19061]
          Length = 311

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 34/137 (24%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           YVDER+ +  R+LI   IEN F                         +L+L  G+G  ++
Sbjct: 105 YVDERVLI-PRSLIRDVIENRF---------------EGLISHQPSTILDLCTGSGCIAI 148

Query: 226 VLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK 283
             A  F    V AV+I+  ++  A  NI  NH  + +++ + S  F              
Sbjct: 149 ACAHAFSEAEVDAVDISPDALAVAEINIE-NHKLSHRVIPIRSDLF-------------- 193

Query: 284 DIDIHSYRFKTIFVDPP 300
             DI S ++  I  +PP
Sbjct: 194 -HDIPSVKYDIIATNPP 209


>gi|229366852|gb|ACQ58406.1| Methyltransferase-like protein 10 [Anoplopoma fimbria]
          Length = 238

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 13/133 (9%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHV 256
           +L W+  A       +L++  GNG F + LA+H    +  ++ +  SVE AR  + A  +
Sbjct: 69  VLRWMDKAKIPEDAAILDIGTGNGAFLVELAKHGCRNLTGIDYSPASVELARNVLQAEDL 128

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-----TVGM 311
             V +  M                +  D+ I    F  I ++P  +  D           
Sbjct: 129 TAVTVKEMD-------FLNCHGDLKGFDVCIDKGTFDAISLNPDSAKEDKKQYVQVLKDA 181

Query: 312 VQAYPHILYISCN 324
           ++        SCN
Sbjct: 182 LKDKGFFAITSCN 194


>gi|225181539|ref|ZP_03734981.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
 gi|225167787|gb|EEG76596.1| dimethyladenosine transferase [Dethiobacter alkaliphilus AHT 1]
          Length = 296

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 3/93 (3%)

Query: 191 NAGINVHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           N  ++ ++L+ ++ AA       +LE+  G G+ +  LA +  RVL VEI    +   R 
Sbjct: 38  NFLVDENILKKIISAADVQKSDRILEIGPGIGSLTQKLAENASRVLTVEIDTRLIPVLRE 97

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
            +A    +NV+I+   + +F  A   E    +L
Sbjct: 98  TLA--EYDNVEIIHGDAMDFDPAPVCEEGPVKL 128


>gi|209364159|ref|YP_001425062.2| 3-demethylubiquinone-9 3-methyltransferase [Coxiella burnetii
           Dugway 5J108-111]
 gi|207082092|gb|ABS77540.2| 3-demethylubiquinone 3-methyltransferase [Coxiella burnetii Dugway
           5J108-111]
          Length = 243

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           IN   L+++          +L++ CG G  S  LA+H   V  V++++  ++ A+ +   
Sbjct: 45  INPVRLKYIEQQITLKGKHVLDVGCGGGLLSEALAKHGAIVTGVDMSESLIDVAKNHAEQ 104

Query: 254 NHVNNVKIVRMSSKEFTQAMRR 275
             + N+       +  T+  +R
Sbjct: 105 QQL-NINYQCQDIEILTKDAQR 125


>gi|207859627|ref|YP_002246278.1| hypothetical protein SEN4261 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206711430|emb|CAR35814.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 543

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 53  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 111

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 112 ANL-NIDYIQQD 122


>gi|205353498|ref|YP_002227299.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205273279|emb|CAR38244.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628591|gb|EGE34934.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 310

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRINERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNHF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A +N
Sbjct: 126 ----------AGLISQQPKYILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEHN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  +++V  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHHVTPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|196248969|ref|ZP_03147669.1| ribosomal protein L11 methyltransferase [Geobacillus sp. G11MC16]
 gi|196211845|gb|EDY06604.1| ribosomal protein L11 methyltransferase [Geobacillus sp. G11MC16]
          Length = 315

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAA 253
              M    L        +++++  G+G  S+  A      V A+++   ++++AR N+  
Sbjct: 164 TTVMCLQALEKYVHPGDNVIDVGTGSGILSIAAAMLGAHSVRALDLDPVAIDSARLNVKL 223

Query: 254 NHVNNVKIVRM-SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           N V +V  V   +  +           N L +I +         + P   G    T G++
Sbjct: 224 NKVQHVVTVAQNNLLDHIDEQADVIVANILAEIILRFTADAYRLLKP---GGRFITSGII 280

Query: 313 QAYPHILYISCNPDSLCRDLS--ILSTTHTIERL 344
           QA                D+   +L+    IE +
Sbjct: 281 QAKKQ-------------DVKDGLLAAGFFIEEV 301


>gi|194736219|ref|YP_002117416.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197300612|ref|ZP_03166137.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194711721|gb|ACF90942.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197291721|gb|EDY31071.1| putative methionine biosynthesis protein MetW [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITRL-LPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|195577026|ref|XP_002078374.1| GD22575 [Drosophila simulans]
 gi|194190383|gb|EDX03959.1| GD22575 [Drosophila simulans]
          Length = 323

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 114 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 172

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V   + E         E   L ++ +   ++  
Sbjct: 173 TAIERSKAATVLAAENAKMLGLLNRFEVHNHTME---------EDKYLPEV-LKDKKYDL 222

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 223 IISNPP 228


>gi|162456342|ref|YP_001618709.1| putative methylase [Sorangium cellulosum 'So ce 56']
 gi|161166924|emb|CAN98229.1| putative methylase [Sorangium cellulosum 'So ce 56']
          Length = 181

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFT 270
           + +LY G G   +  L+R   R + VE  +P++   R N+AA  ++   ++V +  +   
Sbjct: 44  VCDLYAGTGALGIEALSRGARRAVFVESGRPALSVLRENLAALGLDEAARVVPLPVERAL 103

Query: 271 QAMRREREFN 280
           + +R E  F+
Sbjct: 104 ELLRGEGPFD 113


>gi|254361724|ref|ZP_04977860.1| possible methyltransferase [Mannheimia haemolytica PHL213]
 gi|261492039|ref|ZP_05988614.1| putative methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495016|ref|ZP_05991484.1| putative methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153093250|gb|EDN74256.1| possible methyltransferase [Mannheimia haemolytica PHL213]
 gi|261309332|gb|EEY10567.1| putative methyltransferase [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261312322|gb|EEY13450.1| putative methyltransferase [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 251

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 200 EWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVN 257
           +W++A         +LE+ C  G  ++ LA+ F+ +++ +++ + ++E AR NI  NHV 
Sbjct: 28  DWLIANGDFDKNKKVLEVACNMGTTAIQLAQQFECQIVGIDLDEDALEKARKNIKENHVE 87

Query: 258 N-VKIVRMSSKEF 269
           + +++ R ++ + 
Sbjct: 88  HLIQVQRANATKL 100


>gi|55379419|ref|YP_137269.1| hypothetical protein rrnAC2807 [Haloarcula marismortui ATCC 43049]
 gi|55232144|gb|AAV47563.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 236

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
              + G +L+  CG G  +L L      VLAV+ +  +V  AR 
Sbjct: 54  FSAVTGRVLDAGCGVGRHTLPLQERGHSVLAVDRSPGAVAVARE 97


>gi|83591212|ref|YP_431221.1| HemK family modification methylase [Moorella thermoacetica ATCC
           39073]
 gi|83574126|gb|ABC20678.1| [protein release factor]-glutamine N5-methyltransferase [Moorella
           thermoacetica ATCC 39073]
          Length = 283

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 21/130 (16%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251
              ++E VL      +   + +   G+G  +L LA +    RV A +I+  ++  A+ N 
Sbjct: 97  TEVVVEAVLERLDPCESYTIADCGTGSGAIALSLAHYLPRARVYATDISPAALTVAQENA 156

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR--SGLDDATV 309
               +     V +   +F   +R                +   +  +PP   +       
Sbjct: 157 RKLGL--AARVTLLQGDFLAPLR--------------GLKLDALVANPPYIPTAALPGLP 200

Query: 310 GMVQAYPHIL 319
             V++ P + 
Sbjct: 201 ADVRSEPRLA 210


>gi|77734475|emb|CAJ26225.1| hypothetical protein [Thermotoga sp. RQ7]
          Length = 207

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             +L         +L++ CG G F++ +A+   +V+ V+++   ++ AR       ++ V
Sbjct: 4   AKILENFHIRGKKVLDVACGEGTFAVEIAKQGFKVVGVDLSSEMLKFARKRAKEESIS-V 62

Query: 260 KIVRMSSKEF 269
             ++   +E 
Sbjct: 63  VFLKKDMREL 72


>gi|323222902|gb|EGA07252.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
          Length = 168

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VL    G +  +L+   G G  ++ +A    +V   +++   +  AR    A  V  
Sbjct: 34  LDRVLEEIGGRKLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSK 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++  +++    +    + 
Sbjct: 94  DMHFIQCPAQDVASHLESPVDL 115


>gi|319949423|ref|ZP_08023485.1| putative methyltransferase [Dietzia cinnamea P4]
 gi|319436920|gb|EFV91978.1| putative methyltransferase [Dietzia cinnamea P4]
          Length = 222

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 12/123 (9%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV 256
           + + +          +L++  G+G  ++  A +    V+A +I+  +V  A  N     V
Sbjct: 25  LCDALEDCDVVAGKRVLDICTGSGILAIEAALKGAREVVAYDISPAAVACASSNAERAGV 84

Query: 257 NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
                      +    +    +       D+       +  D P  G          A  
Sbjct: 85  -----------DVDVRLGTLADARYAGPFDVVVSNPPYVPSDAPLEGTGPNRAWDAGANG 133

Query: 317 HIL 319
            ++
Sbjct: 134 RVV 136


>gi|317153865|ref|YP_004121913.1| methyltransferase small [Desulfovibrio aespoeensis Aspo-2]
 gi|316944116|gb|ADU63167.1| methyltransferase small [Desulfovibrio aespoeensis Aspo-2]
          Length = 228

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 14/103 (13%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV---------NNVKIVRM 264
           L+L CG G   ++ +    RV+A +   P+V  AR+N A N+V              +R 
Sbjct: 85  LDLGCGLGLTGIIASHAGARVVAFDYEWPAVRFARHNAALNNVPQPLWALMDWRYPALRA 144

Query: 265 SSKEFT---QAMRREREFNRLKDIDIHSYRF--KTIFVDPPRS 302
            + +F      +  +R F+ L  +  H+     K    +P R+
Sbjct: 145 QAFDFIWGGDVLYEKRFFDPLIRLFRHALAPGGKIWIGEPVRT 187


>gi|257054996|ref|YP_003132828.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
 gi|256584868|gb|ACU96001.1| putative methyltransferase [Saccharomonospora viridis DSM 43017]
          Length = 189

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 195 NVHMLEWVLAATKGIQGD-----LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAAR 248
              ++   L ++    G+     +L+LY G+G   L  L+R     + VE  + +VE  R
Sbjct: 24  TTELVREALFSSLEAAGELDGVRVLDLYSGSGALGLEALSRGAREAMFVEADRTAVEVLR 83

Query: 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
            NIA   +  V + +   +        E     L D  
Sbjct: 84  GNIARVGLGGV-VRQGKVETVVAEPAPEPFELVLADPP 120


>gi|194443138|ref|YP_002043740.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194401801|gb|ACF62023.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 541

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|171678107|ref|XP_001904003.1| hypothetical protein [Podospora anserina S mat+]
 gi|170937123|emb|CAP61780.1| unnamed protein product [Podospora anserina S mat+]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D+L++ CG G  S  LA      RV  VEI + ++ AAR    +  + N   V       
Sbjct: 38  DILDIGCGPGTISADLAALVPQGRVTCVEITESALNAARSTFTSRSLGNGDFVVGDVTSR 97

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                   +   L  + +H     T+ +   R  L   
Sbjct: 98  LPFEDDSFDVVHLHMVIMHLPCDATVALKEVRRVLKPG 135


>gi|169824475|ref|YP_001692086.1| ribosomal protein L11 methyltransferase [Finegoldia magna ATCC
           29328]
 gi|167831280|dbj|BAG08196.1| ribosomal protein L11 methyltransferase [Finegoldia magna ATCC
           29328]
          Length = 307

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 213 LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L++ CG+G  S+V ++     V A +I   ++EA   N   N ++N+  V+ S  +   
Sbjct: 173 VLDIGCGSGILSVVSSKLGAKEVFATDIDPLAIEATLENANLNKISNINAVQGSLLDNVD 232

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                   N L ++         +  D P++   D  
Sbjct: 233 KKYDVVVANILLNV------LDILIPDLPKALKKDGV 263


>gi|119963997|ref|YP_948933.1| hypothetical protein AAur_3236 [Arthrobacter aurescens TC1]
 gi|119950856|gb|ABM09767.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
          Length = 267

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           ++++ CGNG+F+ +LA+HF   L ++ +  +V+ AR+      +           
Sbjct: 71  IVDVGCGNGSFTRLLAQHFPHALGLDYSANAVDRARHEAE--GITTASFAVCDMT 123


>gi|145595862|ref|YP_001160159.1| methyltransferase type 12 [Salinispora tropica CNB-440]
 gi|145305199|gb|ABP55781.1| Methyltransferase type 12 [Salinispora tropica CNB-440]
          Length = 201

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 12/118 (10%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             ++ A       +L+  CG G     LA     V+ V+     VEAA    A       
Sbjct: 37  ARLIDALVAPGSRVLDAGCGTGRVGAALALRGHTVVGVDADPVLVEAAG--AAHLG---P 91

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           + +     E   A   E E     D  + +    T       +G +   +  + A+  
Sbjct: 92  RWLVADLAELDLAAAGEPEPF---DAAVVAGNVMTFVA----AGTEAEVLRRIAAHLR 142


>gi|115523372|ref|YP_780283.1| Mg-protoporphyrin IX methyl transferase [Rhodopseudomonas palustris
           BisA53]
 gi|115517319|gb|ABJ05303.1| magnesium protoporphyrin O-methyltransferase [Rhodopseudomonas
           palustris BisA53]
          Length = 233

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
           +L W+ A   G    LL+  CG G  S   AR   +V+A++++   V  AR 
Sbjct: 52  LLSWLPADMTGT--RLLDAGCGTGTLSFEAARRGAQVVAIDLSPTLVAVARE 101


>gi|163848211|ref|YP_001636255.1| type 11 methyltransferase [Chloroflexus aurantiacus J-10-fl]
 gi|222526119|ref|YP_002570590.1| type 11 methyltransferase [Chloroflexus sp. Y-400-fl]
 gi|163669500|gb|ABY35866.1| Methyltransferase type 11 [Chloroflexus aurantiacus J-10-fl]
 gi|222449998|gb|ACM54264.1| Methyltransferase type 11 [Chloroflexus sp. Y-400-fl]
          Length = 271

 Score = 44.6 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGN 222
           R++ +E   V      YRQ  +        +    +++++ A        +L++ CG G 
Sbjct: 7   REWWEELFQVYEFAH-YRQYAD-------ELTRREVDFLIDALGLRGVETVLDVACGGGR 58

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            SL LA     V+ ++ A   +  A+       + NV+ V    ++ 
Sbjct: 59  HSLALAARGWTVVGLDAAASVIAHAQAAATDQGL-NVEFVTGDMRQL 104


>gi|318040443|ref|ZP_07972399.1| ubiquinone/menaquinone biosynthesis methyltransferase
           [Synechococcus sp. CB0101]
          Length = 238

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 201 WVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHV 256
             +A  +   G  LL+L CG G+ +LVLA        VL ++ A   +E AR    A   
Sbjct: 42  QAIAWLEPQPGQCLLDLCCGTGDLALVLAEKVRPAGLVLGIDSAAAPLERARQRARAQPW 101

Query: 257 NNVKIVRMSSK 267
             ++  +  + 
Sbjct: 102 LPLEFRQGDAA 112


>gi|256820610|ref|YP_003141889.1| modification methylase, HemK family [Capnocytophaga ochracea DSM
           7271]
 gi|256582193|gb|ACU93328.1| modification methylase, HemK family [Capnocytophaga ochracea DSM
           7271]
          Length = 281

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 195 NVHMLEWVLAATKGIQGDL--LELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYN 250
              +++WVL         +  L++  G+G  ++ LA+      V A+++++ +++ A+ N
Sbjct: 98  TEELVDWVLQEYPDKSEKIKILDVGTGSGCIAISLAKALPNAVVTAIDVSEEALKVAKRN 157

Query: 251 IAAN 254
              N
Sbjct: 158 AELN 161


>gi|298346960|ref|YP_003719647.1| putative rRNA (guanine-N(2)-)-methyltransferase [Mobiluncus
           curtisii ATCC 43063]
 gi|298237021|gb|ADI68153.1| possible rRNA (guanine-N(2)-)-methyltransferase [Mobiluncus
           curtisii ATCC 43063]
          Length = 155

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 15/119 (12%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNI-AANH 255
           M   +L +       +L+L+ G+G   L  L+R     + V+ A  + +  R NI A  +
Sbjct: 1   MFSHLLCSGFPQGATVLDLFAGSGALGLEALSRGGASAVFVDAAGSAAKVLRANIDALRY 60

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + V+++   + +F          + LK  D     F  IF+DPP +        ++  
Sbjct: 61  RDRVRVLVKDAAKFV---------SELKPTD----CFDLIFLDPPYALAPYVLCEILAG 106


>gi|169350943|ref|ZP_02867881.1| hypothetical protein CLOSPI_01720 [Clostridium spiroforme DSM 1552]
 gi|169292005|gb|EDS74138.1| hypothetical protein CLOSPI_01720 [Clostridium spiroforme DSM 1552]
          Length = 182

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 14/108 (12%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G++L+L+ G+G   +  L+R  D + +V+    + +  + N+ A ++ N ++ ++  ++ 
Sbjct: 43  GNVLDLFAGSGGLGIEALSRGCDFLYSVDNQYAAFQIIKENLNALNIENARVFKLDYRKA 102

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQAYP 316
            +    E+             +F  + +DPP   GL D  +  +    
Sbjct: 103 LKRFNEEK------------IKFDLVLLDPPYGKGLVDGILEFLIENK 138


>gi|116786626|gb|ABK24178.1| unknown [Picea sitchensis]
          Length = 353

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 14/135 (10%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARY 249
           N+      L             +L++  GNG F   LA+  F  +   + ++ +VE A+ 
Sbjct: 155 NSEATAKELA---------SWSVLDIGTGNGLFLQALAKQGFSDLTGTDYSEAAVELAQN 205

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
               +   ++  +     E ++  R+ R  N    +D              R     +  
Sbjct: 206 LAIRDGFTSINFLADDILE-SKLQRQFRLINDKGTLDAIGLHPDGAVK---RIIYWGSVS 261

Query: 310 GMVQAYPHILYISCN 324
            ++     ++  SCN
Sbjct: 262 KLMAPGGLLVITSCN 276


>gi|161612878|ref|YP_001586844.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|161362242|gb|ABX66010.1| hypothetical protein SPAB_00584 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 310

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRINERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNHF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A +N
Sbjct: 126 ----------AGLISQQPKYILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEHN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  +++V  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHHVTPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|158521498|ref|YP_001529368.1| ribosomal L11 methyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158510324|gb|ABW67291.1| ribosomal L11 methyltransferase [Desulfococcus oleovorans Hxd3]
          Length = 285

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAA 253
            +  L+   +        +++L  G G  S+  A      ++ V+I   + + A  N   
Sbjct: 133 CLEALDLAWSGQDLRPKTVIDLGTGTGILSVAAAMLGAEAIVGVDINFLAAQTALRNTRL 192

Query: 254 NHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
           N V + V IV+  + +F  A       N   DI  H
Sbjct: 193 NRVQDRVLIVKGDATDFAGAPADLLMANIHYDIMKH 228


>gi|71275664|ref|ZP_00651949.1| Conserved hypothetical protein 95 [Xylella fastidiosa Dixon]
 gi|71897792|ref|ZP_00680018.1| Conserved hypothetical protein 95 [Xylella fastidiosa Ann-1]
 gi|170729517|ref|YP_001774950.1| putative methylase [Xylella fastidiosa M12]
 gi|71163555|gb|EAO13272.1| Conserved hypothetical protein 95 [Xylella fastidiosa Dixon]
 gi|71732347|gb|EAO34401.1| Conserved hypothetical protein 95 [Xylella fastidiosa Ann-1]
 gi|167964310|gb|ACA11320.1| putative methylase [Xylella fastidiosa M12]
          Length = 208

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
           + +   +  W++    G    +L+L+ G+G   L  ++R   R + VE     V   R  
Sbjct: 42  SRVRETLFNWLMPVLPGAH--VLDLFAGSGALGLEAVSRGAARAVLVERHAELVVLLREQ 99

Query: 251 IAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           +A     + V+IV+  + ++ Q     R      D    +  ++T+ V   R  L  A  
Sbjct: 100 VARLGAQDQVEIVQADALQWLQRPAAARFDIIFLDPPFAAGVWETVVV---RLALHVAAA 156

Query: 310 GMVQAYPHI 318
             +     +
Sbjct: 157 AWLYMESPV 165


>gi|326626177|gb|EGE32522.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 543

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 53  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 111

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 112 ANL-NIDYIQQD 122


>gi|320450414|ref|YP_004202510.1| methyltransferase [Thermus scotoductus SA-01]
 gi|320150583|gb|ADW21961.1| methyltransferase [Thermus scotoductus SA-01]
          Length = 170

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 13/98 (13%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L      +G  L+LY G+G   L  A        VE  + +V   + N+    +   +IV
Sbjct: 34  LRLRYPKRGRFLDLYAGSGAVGLEAASEGFEATLVEKDQEAVALLKENLRRTGLR-ARIV 92

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            +  + F            L +      R+   F+ PP
Sbjct: 93  PLPVEVF------------LPEAKARGERYTVAFMAPP 118


>gi|315613342|ref|ZP_07888251.1| methyltransferase domain protein [Streptococcus sanguinis ATCC
           49296]
 gi|315314577|gb|EFU62620.1| methyltransferase domain protein [Streptococcus sanguinis ATCC
           49296]
          Length = 196

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 20/104 (19%)

Query: 212 DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L++ CG G   L LA+ +  +   V+I   +++ AR N   N +          ++  
Sbjct: 60  TVLDVGCGYGPLGLSLAKAYGVQATMVDINNRALDLARQNAERNKIEATIFQSNIYEQV- 118

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
                               +F  +  +PP          +++ 
Sbjct: 119 ------------------EGKFDHVISNPPIRAGKQVVHEIIEK 144


>gi|238501564|ref|XP_002382016.1| RNA methylase family protein, putative [Aspergillus flavus
           NRRL3357]
 gi|220692253|gb|EED48600.1| RNA methylase family protein, putative [Aspergillus flavus
           NRRL3357]
          Length = 252

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEI 239
            ++++       +   + E + +A    +  L++ + G G  ++  AR     RV A+E 
Sbjct: 60  TDDAWFGVTPEPVANKIAEHIASAAPASRMVLVDAFAGAGGNTIAFARSGRWKRVYAIEK 119

Query: 240 AKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               ++ A++N     V + +      S +           N+LKD+      +  +F  
Sbjct: 120 NPAVLQCAKHNAKIYGVEDKITWFEGDSLQIVN--------NQLKDLG----PYSVLFAS 167

Query: 299 PPRSG 303
           PP  G
Sbjct: 168 PPWGG 172


>gi|163857113|ref|YP_001631411.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Bordetella petrii DSM 12804]
 gi|163260841|emb|CAP43143.1| putative adenine-specific methylase [Bordetella petrii]
          Length = 296

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 69/196 (35%), Gaps = 46/196 (23%)

Query: 118 IVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTK---------ICLDRDYVD 168
           +V    H  L+        R+     AR   +     A +           +C  R YVD
Sbjct: 44  LVLHTLHLPLNTLDPFLDARVLPDERARVLDLLDRRVAERQPAAYLTREAWLCGHRFYVD 103

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSL- 225
           ER+ V    +                   +L+  LA     +    +L++  G+G  ++ 
Sbjct: 104 ERVIVPRSPI-----------------AELLDQGLAPWVEPESVRAVLDMCTGSGCLAIL 146

Query: 226 -VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD 284
             LA    RV AV+++  ++E AR N+A   + +              + R   F++L  
Sbjct: 147 AALAFSDARVDAVDVSPDALEVARRNVADYGLQDR-----------LTLHRSDLFDQLP- 194

Query: 285 IDIHSYRFKTIFVDPP 300
               +  +  I  +PP
Sbjct: 195 ----AAAYDVIVCNPP 206


>gi|160900460|ref|YP_001566042.1| protein-L-isoaspartate O-methyltransferase [Delftia acidovorans
           SPH-1]
 gi|160366044|gb|ABX37657.1| protein-L-isoaspartate O-methyltransferase [Delftia acidovorans
           SPH-1]
          Length = 247

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 192 AGINVHMLEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
             +   M E +L +     G   +LE+  G G  + VLAR    V ++E  +   E AR 
Sbjct: 94  PSVVARMTELLLGSEAAKSGLGRVLEIGTGCGYQAAVLARVAREVYSIERLRGLHEKARS 153

Query: 250 NIAANHVNNVKIVRMS 265
           N+    + NV ++   
Sbjct: 154 NLRPWRLTNVHLIFGD 169


>gi|160935001|ref|ZP_02082387.1| hypothetical protein CLOLEP_03877 [Clostridium leptum DSM 753]
 gi|156866454|gb|EDO59826.1| hypothetical protein CLOLEP_03877 [Clostridium leptum DSM 753]
          Length = 306

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 3/153 (1%)

Query: 161 CLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
            L R   +E     GRT+++ +   +F          +   +L         LL++ CG+
Sbjct: 122 LLIRPTWEEAYDPQGRTVLHLEPGLAFG-TGTHETTRLCLELLEKYLKPGMSLLDVGCGS 180

Query: 221 GNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKEFTQAMRRERE 278
           G  S+  L    ++ + V+I   +V+ A  N   N V    + +  +  +          
Sbjct: 181 GILSVAGLLLGAEKAVGVDIDALAVKTAGENAQTNGVEEKFQGICGNLTDQVAGKYELVV 240

Query: 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            N + DI I   +  T +++P    L    +  
Sbjct: 241 ANIVADIIILLTKDITRYLNPDSIYLMSGIIDT 273


>gi|134045502|ref|YP_001096988.1| ribosomal RNA methyltransferase NOP2 [Methanococcus maripaludis C5]
 gi|132663127|gb|ABO34773.1| ribosomal RNA methyltransferase NOP2 [Methanococcus maripaludis C5]
          Length = 277

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 210 QGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             DLL++    G  +  LA+   +   +LAVEI K  +++ R NI      N  ++  ++
Sbjct: 90  DDDLLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMINTNA 149

Query: 267 KEFTQAMRREREF-------NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
               + ++ ++         N +KD +    +   +F    +  L    + +++    ++
Sbjct: 150 VNIDKKLKFDKILLDAPCTGNEIKDCNRVKTKRDILFCAKRQVELFRTAIEVLKDGGELV 209

Query: 320 YISCNPD 326
           Y +C+P+
Sbjct: 210 YSTCSPE 216


>gi|167034013|ref|YP_001669244.1| methyltransferase small [Pseudomonas putida GB-1]
 gi|166860501|gb|ABY98908.1| methyltransferase small [Pseudomonas putida GB-1]
          Length = 317

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 20/116 (17%)

Query: 187 FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSV 244
           F  P++     ++   L++T       +++ CG+G  +L++AR      V AV+I   ++
Sbjct: 115 FFGPDSYRFAQLIHDHLSSTPERVQHAVDIGCGSGVGALLIARAAQHAQVCAVDINPMAL 174

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                N A   V NV + R                     +D  +  F  I  +PP
Sbjct: 175 RHTAINAALAGVANVSVERSDL------------------LDDIAGTFDLIVANPP 212


>gi|158320129|ref|YP_001512636.1| arsenite S-adenosylmethyltransferase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140328|gb|ABW18640.1| Methyltransferase type 11 [Alkaliphilus oremlandii OhILAs]
          Length = 263

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 213 LLELYCGNGNFSLVLARH----FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L+L  G G F   LAR        V+ V++    +  AR N   +   NV+      + 
Sbjct: 84  VLDLGSG-GGFDCFLARRQVGESGYVIGVDMTPDMISLARKNAEKSGYTNVEFRLGEIEH 142

Query: 269 F 269
            
Sbjct: 143 L 143


>gi|119946919|ref|YP_944599.1| S-adenosylmethionine-dependent methyltransferase [Psychromonas
           ingrahamii 37]
 gi|119865523|gb|ABM05000.1| S-adenosylmethionine-dependent methyltransferase [Psychromonas
           ingrahamii 37]
          Length = 314

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 23/166 (13%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHM---LEWVLAATKGIQGDLL 214
           T+I       D  L     TL Y+    S  Q N GI + M    +W+          +L
Sbjct: 92  TEILYGEPITD--LIARENTLKYKINLGS-KQ-NYGIFLDMKNGRQWL--QNNSENKSVL 145

Query: 215 ELYCGNGNFS-LVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            L+     FS   +A   +RV+ ++++K ++   R N   N  +++  V+  + +  ++ 
Sbjct: 146 NLFSYTCAFSNAAIAGGAERVINLDMSKAALAVGRDNHRLND-HDLSRVKYFAHDLFKSW 204

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
            + + F            +  +  DPP   L   +V + + YP I+
Sbjct: 205 GKVKRFG----------PYDIVIADPPS--LQKGSVNIKRDYPKII 238


>gi|9715737|emb|CAC01607.1| putative methyltransferase [Anabaena circinalis 90]
          Length = 263

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVE 245
           TQ       +++E +L      QG++L++ CG G  +  L  ++    V+ + I++  +E
Sbjct: 38  TQNQHEACFNLMEKLLEFIPRKQGNILDVGCGLGATTSHLLNYYSPADVVGINISRKQIE 97

Query: 246 AARYNIAANHVNNVKIVRMSS 266
            +  N         K + M +
Sbjct: 98  RSIVNA-----PGCKFICMDA 113


>gi|169769126|ref|XP_001819033.1| RNA methylase family protein [Aspergillus oryzae RIB40]
 gi|83766891|dbj|BAE57031.1| unnamed protein product [Aspergillus oryzae]
          Length = 240

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEI 239
            ++++       +   + E + +A    +  L++ + G G  ++  AR     RV A+E 
Sbjct: 48  TDDAWFGVTPEPVANKIAEHIASAAPASRMVLVDAFAGAGGNTIAFARSGRWKRVYAIEK 107

Query: 240 AKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               ++ A++N     V + +      S +           N+LKD+      +  +F  
Sbjct: 108 NPAVLQCAKHNAKIYGVEDKITWFEGDSLQIVN--------NQLKDLG----PYSVLFAS 155

Query: 299 PPRSG 303
           PP  G
Sbjct: 156 PPWGG 160


>gi|12045114|ref|NP_072925.1| HemK family modification methylase [Mycoplasma genitalium G37]
 gi|255660258|ref|ZP_05405667.1| HemK family modification methylase [Mycoplasma genitalium G37]
 gi|2496352|sp|Q49404|Y259_MYCGE RecName: Full=Uncharacterized protein MG259
 gi|1045951|gb|AAC71479.1| modification methylase, HemK family [Mycoplasma genitalium G37]
 gi|166078831|gb|ABY79449.1| modification methylase, HemK family [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 456

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF 231
           T+  R L ++  +  F      I+   L  + +         L+L CG+G  ++ L +  
Sbjct: 76  TIQLRKLTFKTKKGVFI---PRIDS--LALIASVNLKKIKTALDLCCGSGTLAIALKKKC 130

Query: 232 DR--VLAVEIAKPSVEAARYNIAANHV 256
           D   V   +I   +++ A+ N   N+V
Sbjct: 131 DTLDVYGSDIDIQALKLAQQNALINNV 157


>gi|88858407|ref|ZP_01133049.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Pseudoalteromonas tunicata D2]
 gi|88820024|gb|EAR29837.1| methylation of 50S ribosomal subunit protein L11 (ribosomal protein
           L11 methyltransferase) [Pseudoalteromonas tunicata D2]
          Length = 292

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L +       +++  CG+G   +   +    RV+ ++I   ++EA+  N   N V 
Sbjct: 149 LEW-LESLDLTGKTVVDFGCGSGILGIAAIKLGAARVIGIDIDPQALEASLDNAQRNGVA 207

Query: 258 N 258
           +
Sbjct: 208 H 208


>gi|330979614|gb|EGH78133.1| methyltransferase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 320

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 85/249 (34%), Gaps = 43/249 (17%)

Query: 86  LMIEMMATIRLEPLLRAKLFQ--------IDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137
           L   ++  +   P    +LF         ++++T    Q +V +   +   +        
Sbjct: 9   LQQHLIDALNNVPNETRRLFHGRGRVWPGLEHITVDWMQGVVLVSVFK---EPLESELAA 65

Query: 138 LRDALHARKYQIQLIGRANKTKIC------------LDRDYVDERLTVAGRTLIYRQIEN 185
           L   LHA     Q       T +             L  D VDE + +    L Y+    
Sbjct: 66  LMQLLHALIDTPQWQQSQAHTLLLQHRYLPQSTTQWLTGDVVDEWV-ITENGLRYKVDFG 124

Query: 186 SFTQPNAGINVHML---EWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAK 241
              Q N+G+ + M    EWV A  KG    +L L+     FS+  LA   D V+ +++A+
Sbjct: 125 K-KQ-NSGLFLDMRYGREWVQAQAKG--KRILNLFAYTCGFSVAALAGGADHVVNLDMAR 180

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            ++   R N   N   ++  V     +  ++  +                +  I +DPP 
Sbjct: 181 AALNRGRENHRLND-QDLSRVTFLGHDLFKSWAKVTRCG----------PYDLIIIDPPS 229

Query: 302 SGLDDATVG 310
                  + 
Sbjct: 230 FQKGSFMLD 238


>gi|327401522|ref|YP_004342361.1| type 11 methyltransferase [Archaeoglobus veneficus SNP6]
 gi|327317030|gb|AEA47646.1| Methyltransferase type 11 [Archaeoglobus veneficus SNP6]
          Length = 252

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           VLA+    +  +L++  G G  +L+LA     V+ ++++K  +E A+       V+ V+ 
Sbjct: 39  VLASVFERRMQILDVGTGTGFLALILAELGHEVVGIDLSKGMLEVAKKKARKLGVD-VEF 97

Query: 262 VRMSSKEF 269
               ++  
Sbjct: 98  KLGDAENL 105


>gi|312795107|ref|YP_004028029.1| ribosomal protein L11 methyltransferase [Burkholderia rhizoxinica
           HKI 454]
 gi|312166882|emb|CBW73885.1| Ribosomal protein L11 methyltransferase (EC 2.1.1.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 299

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           +EW +         LL+  CG+G  ++ LAR      V+ ++I   ++++A++N   N V
Sbjct: 156 MEW-IEQHVRAGDSLLDYGCGSGILAI-LARKCGATPVVGIDIDPQAIDSAQHNSERNRV 213

Query: 257 N 257
           +
Sbjct: 214 D 214


>gi|288541515|gb|ADC45587.1| C5-O-methyltransferase [Streptomyces nanchangensis]
          Length = 286

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 36/159 (22%)

Query: 212 DLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSS--- 266
            +L++ CG+G  ++ LA+     V+ V ++   +E A          + V+ +R  +   
Sbjct: 68  RVLDVGCGSGRPTVRLAQRAPTEVVGVTVSPVQIERATALAEREGVADRVRFIRADAMAL 127

Query: 267 ----KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                 F      E  F+      +     + +     R G   A + +V   P      
Sbjct: 128 PFPDASFDAVWALECMFHMPSPAQVLGEIARVL-----RPGGRLAVMDVVLREPI----- 177

Query: 323 CNPDSLCRDLSILSTTHTIERLALFDQF--PYTRHMECG 359
                  RD  ++    +         F  P   H+E  
Sbjct: 178 -----ASRDRGVVERGRS--------MFAVP--AHIELV 201


>gi|289582071|ref|YP_003480537.1| methyltransferase type 11 [Natrialba magadii ATCC 43099]
 gi|289531624|gb|ADD05975.1| Methyltransferase type 11 [Natrialba magadii ATCC 43099]
          Length = 290

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 211 GDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
             ++E+ CG G     L         V+ V+  +P +E AR  +A     NV +VR  + 
Sbjct: 86  DTVVEMGCGTGANLPYLREQVGPEGTVIGVDFTRPVLERARAMVADRGYENVHVVRGDAT 145

Query: 268 E--FTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
           E  F              D D        +   
Sbjct: 146 EPPFAAVADGAAGTETGDDKDADEADIDALLAT 178


>gi|220922140|ref|YP_002497441.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Methylobacterium nodulans ORS 2060]
 gi|219946746|gb|ACL57138.1| precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE
           subunit [Methylobacterium nodulans ORS 2060]
          Length = 414

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 9/124 (7%)

Query: 203 LAATKGIQGDLL-ELYCGNGNFSL--VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           LAA +   G LL ++  G+G+ ++   L    +R +A+E  +   E    N  A  V ++
Sbjct: 255 LAALRPRAGQLLWDVGAGSGSVAIEWCLRHPANRAVAIEAREERAERIGRNARALGVPDL 314

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGLDDATVG----MVQ 313
            +VR  + E  + + R         +   +         PP  R   +  T+     +++
Sbjct: 315 AVVRGRAPEALRELSRPDAAFIGGGVSDPALIAAVWAALPPGGRLVCNAVTLESEPVLIE 374

Query: 314 AYPH 317
           A+  
Sbjct: 375 AHRR 378


>gi|260818890|ref|XP_002604615.1| hypothetical protein BRAFLDRAFT_126775 [Branchiostoma floridae]
 gi|229289943|gb|EEN60626.1| hypothetical protein BRAFLDRAFT_126775 [Branchiostoma floridae]
          Length = 379

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 52/155 (33%), Gaps = 19/155 (12%)

Query: 212 DLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            + +L C +G    ++AR F       ++++  +V  A+   AA  + NV      + + 
Sbjct: 195 TVCDLGCASGYLLFLMARRFPNSTYYGIDLSAEAVSMAKKEAAAKGITNVICNVGDATKL 254

Query: 270 TQAMRRERE----FNRLKDIDIHS---------YRFKTIFVDPPRSGLDDATVGMVQAYP 316
            +    + +     + + D++             +    F    R         +     
Sbjct: 255 PEDWSEKFDYVITLSTIHDVNAPERCLREIRRVLKPGGQFSMWERDAHTQHHDNIGNPTA 314

Query: 317 HILYI----SCNPDSLCRDLSILSTTHTIERLALF 347
            ++Y+    SC P SL  D + L      E+    
Sbjct: 315 SMIYVISMMSCVPMSLHDDGAGLGAMWGQEQALPM 349


>gi|198244990|ref|YP_002218368.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197939506|gb|ACH76839.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
          Length = 541

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|297202619|ref|ZP_06920016.1| RsmD family RNA methyltransferase [Streptomyces sviceus ATCC 29083]
 gi|197713194|gb|EDY57228.1| RsmD family RNA methyltransferase [Streptomyces sviceus ATCC 29083]
          Length = 195

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L  L+R     L VE    +    R N+    +   ++    +++  
Sbjct: 49  RVLDLYAGSGAVGLEALSRGASHTLLVEADARAARTIRENVRNIGLPGAEVRAGKAEQII 108

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           +                 +  +  +F+DPP    D     ++
Sbjct: 109 RT-------------GAPTEPYDLVFLDPPYRVTDHDLREIL 137


>gi|161502470|ref|YP_001569583.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863817|gb|ABX20440.1| hypothetical protein SARI_00514 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 310

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRVNERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNHF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A +N
Sbjct: 126 ----------AGLISQQPKYILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEHN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  +++V  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHHVTPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|134079238|emb|CAK40721.1| unnamed protein product [Aspergillus niger]
          Length = 266

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNG--NFSLVLARHFDRVLAVEI 239
            ++++       +   + E +  +    +  L++ + G G  + +  L+  + RV A+E 
Sbjct: 74  TDDAWFGVTPEPVANKIAEHMAQSAPAGRSILVDAFAGAGGNSIAFALSGRWKRVYAIEK 133

Query: 240 AKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               ++ A++N     V + +        E  +        N+LKD+      +  +F  
Sbjct: 134 NPAVLQCAKHNAKIYGVADKITWFEGDCFEIIK--------NQLKDL----APYSVVFAS 181

Query: 299 PPRSG 303
           PP  G
Sbjct: 182 PPWGG 186


>gi|124515208|gb|EAY56719.1| Modification methylase (HemK) [Leptospirillum rubarum]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 62/182 (34%), Gaps = 33/182 (18%)

Query: 131 WRECAIRLRDALHA--RKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           W      L D L A    +  +   R     I     +++ER  VA  TLI R       
Sbjct: 52  WTRDREVLPDELSACYASWVERRRQREPFHLITGSVPFLEERFAVAPGTLIPRPE----- 106

Query: 189 QPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVE 245
                    ++E VL        + +L+L CG+G   + L + F     LAV+ +   +E
Sbjct: 107 ------TESLVENVLRILDSRSPERILDLGCGSGILGISLLKKFPKAHCLAVDRSVVPLE 160

Query: 246 AARYNIAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            +R N  A   ++ +  V+                    ++      F  I  +PP    
Sbjct: 161 VSRKNALALGVLSRIHFVQGD----------------WTEMLRLDQGFDLIVSNPPYIAS 204

Query: 305 DD 306
            D
Sbjct: 205 GD 206


>gi|153207274|ref|ZP_01946038.1| 3-demethylubiquinone-9 3-O-methyltransferase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165918676|ref|ZP_02218762.1| 3-demethylubiquinone-9 3-O-methyltransferase [Coxiella burnetii RSA
           334]
 gi|212218182|ref|YP_002304969.1| 3-demethylubiquinone-9 3-methyltransferase [Coxiella burnetii
           CbuK_Q154]
 gi|226725538|sp|B6J5Y2|UBIG_COXB1 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|120576762|gb|EAX33386.1| 3-demethylubiquinone-9 3-O-methyltransferase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165917611|gb|EDR36215.1| 3-demethylubiquinone-9 3-O-methyltransferase [Coxiella burnetii RSA
           334]
 gi|212012444|gb|ACJ19824.1| 3-demethylubiquinone 3-methyltransferase [Coxiella burnetii
           CbuK_Q154]
          Length = 234

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           IN   L+++          +L++ CG G  S  LA+H   V  V++++  ++ A+ +   
Sbjct: 36  INPVRLKYIEQQITLKGKHVLDVGCGGGLLSEALAKHGAIVTGVDMSESLIDVAKNHAEQ 95

Query: 254 NHVNNVKIVRMSSKEFTQAMRR 275
             + N+       +  T+  +R
Sbjct: 96  QQL-NINYQCQDIEILTKDAQR 116


>gi|330936898|ref|XP_003305523.1| hypothetical protein PTT_18388 [Pyrenophora teres f. teres 0-1]
 gi|311317417|gb|EFQ86380.1| hypothetical protein PTT_18388 [Pyrenophora teres f. teres 0-1]
          Length = 274

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 14/92 (15%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R +ENS          H+L ++          +L++ CG G  S+ LA       
Sbjct: 15  RSHSWRTVENS--------CPHLLPYL----SNPSLKILDVGCGPGTISVDLATRVPQGF 62

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           V A++ +   +E AR +     V NV+     
Sbjct: 63  VYAIDPSAEVIEKARKHAKEKGVTNVRFEVGD 94


>gi|293394169|ref|ZP_06638469.1| ribosomal protein L11 methyltransferase [Serratia odorifera DSM
           4582]
 gi|291423147|gb|EFE96376.1| ribosomal protein L11 methyltransferase [Serratia odorifera DSM
           4582]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 20/150 (13%)

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKY--QIQLIGRANKTKICL------DRDYV 167
           + +  L  H LL   +R    +L D    R++      +    +  IC       D D V
Sbjct: 68  EVVAILEQHPLLGAGFRHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDPDAV 127

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV- 226
           +  L      L +       T P   + +  L+ +  A       +++  CG+G  ++  
Sbjct: 128 NVMLDP---GLAFGTG----THPTTALCLQWLDGLDLA----GKTVIDFGCGSGILAIAA 176

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           L     R + ++I   +++A+R N   N V
Sbjct: 177 LKLGAARAIGIDIDPQAIQASRDNAQRNGV 206


>gi|282864607|ref|ZP_06273662.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
 gi|282560546|gb|EFB66093.1| Methyltransferase type 11 [Streptomyces sp. ACTE]
          Length = 268

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 15/93 (16%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R   NS          ++L  +          +L++ CG G  +  LA      R
Sbjct: 18  RSHRWRTAANS--------AAYLLAELR-----PGQRVLDVGCGPGTITADLAALVAPGR 64

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           V  V+ +   +  A        ++NV+      
Sbjct: 65  VTGVDSSGDVLGQAAEVAEERGLDNVEFAVADV 97


>gi|257455515|ref|ZP_05620747.1| methyltransferase type 11 [Enhydrobacter aerosaccus SK60]
 gi|257447084|gb|EEV22095.1| methyltransferase type 11 [Enhydrobacter aerosaccus SK60]
          Length = 253

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+L CG G+ S  +A     V+A +I     E       A  + N+     ++++   
Sbjct: 46  HILDLGCGGGHVSYQVAPVAKSVIAYDITPTMTEVVARQAKARGLTNITTQIGTAEKLPF 105

Query: 272 A 272
           A
Sbjct: 106 A 106


>gi|188584477|ref|YP_001927922.1| methyltransferase type 11 [Methylobacterium populi BJ001]
 gi|179347975|gb|ACB83387.1| Methyltransferase type 11 [Methylobacterium populi BJ001]
          Length = 259

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 6/102 (5%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L+L CG G+ +  +A     V A+++++  ++A         + NV   + S +    A
Sbjct: 48  VLDLGCGGGHVTYAVAPQVRAVTALDLSQAMLDAVAAEARRRGLANVATRQASVEALPFA 107

Query: 273 ------MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
                 +      +   D+         +     R G+ D  
Sbjct: 108 DASFARVLSRYSAHHWGDVPAALREAHRVLTPDGRLGIVDVV 149


>gi|59712112|ref|YP_204888.1| methyltransferase [Vibrio fischeri ES114]
 gi|75353821|sp|Q5E4P6|RLMI_VIBF1 RecName: Full=Ribosomal RNA large subunit methyltransferase I;
           AltName: Full=23S rRNA m5C1962 methyltransferase;
           AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
           RlmI
 gi|59480213|gb|AAW86000.1| methyltransferase [Vibrio fischeri ES114]
          Length = 396

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 12/117 (10%)

Query: 204 AATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           A        +L  +   G F L  L      V+  ++++ +++ A+YN   N  +     
Sbjct: 215 ACKYVKNKSVLNCFSYTGGFGLYALKGGAKHVINADVSQLALDTAKYNAEINKFD----- 269

Query: 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
            +S  EF  A      F  L++   +  +F  + +DPP+         G  + Y  I
Sbjct: 270 -LSKAEFLNA----DVFKLLREYRDNGTKFDVVIMDPPKFAESKNQLTGACRGYKDI 321


>gi|78184772|ref|YP_377207.1| hypothetical protein Syncc9902_1199 [Synechococcus sp. CC9902]
 gi|78169066|gb|ABB26163.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 223

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 195 NVHMLEWVLAATKGIQGD--LLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
            V ++E +L  T  +  D  +++L CG GN ++ LA      +V+ ++ ++P +  A+  
Sbjct: 31  TVALIEQLLDETGPLPKDPLIVDLGCGPGNITIRLAELLPNAQVIGIDGSEPMLAVAKRR 90

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
            +    NN+K +R+   E    ++   +      +  H  +   ++ 
Sbjct: 91  -SIRTSNNLKFIRLQLHEIEVELKDLADLVVSNSLLHHLKKPDLLWS 136


>gi|56412718|ref|YP_149793.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197361652|ref|YP_002141288.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56126975|gb|AAV76481.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093128|emb|CAR58572.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 310

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRINERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNHF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A +N
Sbjct: 126 ----------AGLISQQPKYILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEHN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  +++V  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHHVTPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|16761309|ref|NP_456926.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|16765712|ref|NP_461327.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|29140995|ref|NP_804337.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|207857803|ref|YP_002244454.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|213160946|ref|ZP_03346656.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426187|ref|ZP_03358937.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213582768|ref|ZP_03364594.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213616434|ref|ZP_03372260.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213650420|ref|ZP_03380473.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|213857263|ref|ZP_03384234.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|224583126|ref|YP_002636924.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|289826755|ref|ZP_06545700.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|61250532|sp|P0A293|YFCB_SALTY RecName: Full=Uncharacterized adenine-specific methylase yfcB
 gi|61250534|sp|P0A294|YFCB_SALTI RecName: Full=Uncharacterized adenine-specific methylase yfcB
 gi|25512989|pir||AG0804 conserved hypothetical protein STY2617 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16420929|gb|AAL21286.1| putative methylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503608|emb|CAD07617.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136620|gb|AAO68186.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|206709606|emb|CAR33951.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467653|gb|ACN45483.1| hypothetical protein SPC_1320 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247591|emb|CBG25418.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994488|gb|ACY89373.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301158943|emb|CBW18456.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913376|dbj|BAJ37350.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|320086818|emb|CBY96590.1| putative adenine-specific methylase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222913|gb|EFX47984.1| Ribosomal protein L3 methyltransferase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130718|gb|ADX18148.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|326624209|gb|EGE30554.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|332989318|gb|AEF08301.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 310

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRINERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNHF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A +N
Sbjct: 126 ----------AGLISQQPKYILDMCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEHN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  +++V  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHHVTPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|13475650|ref|NP_107217.1| methyltransferase [Mesorhizobium loti MAFF303099]
 gi|14026406|dbj|BAB53003.1| mlr6770 [Mesorhizobium loti MAFF303099]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY--NIAANH 255
           ++  VL    G   + L+  CG G  + V A  F  V+  +++K  ++ A+   N+   H
Sbjct: 80  LIRDVLRPMGGAGRNCLDFACGTGRIANVAAGLFGEVVGADVSKSMLDCAQVPPNVRLLH 139

Query: 256 VNNVKIVRMSSKEFTQAMR 274
           ++  +     + + T A R
Sbjct: 140 IDLTRQPLGETFDVTTAFR 158


>gi|29653699|ref|NP_819391.1| 3-demethylubiquinone-9 3-methyltransferase [Coxiella burnetii RSA
           493]
 gi|161829915|ref|YP_001596294.1| 3-demethylubiquinone-9 3-methyltransferase [Coxiella burnetii RSA
           331]
 gi|212213149|ref|YP_002304085.1| 3-demethylubiquinone-9 3-methyltransferase [Coxiella burnetii
           CbuG_Q212]
 gi|39932522|sp|Q820B5|UBIG_COXBU RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|189037619|sp|A9NBI0|UBIG_COXBR RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|226725539|sp|B6J1W2|UBIG_COXB2 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|29540962|gb|AAO89905.1| 3-demethylubiquinone 3-methyltransferase [Coxiella burnetii RSA
           493]
 gi|161761782|gb|ABX77424.1| 3-demethylubiquinone-9 3-O-methyltransferase [Coxiella burnetii RSA
           331]
 gi|212011559|gb|ACJ18940.1| 3-demethylubiquinone 3-methyltransferase [Coxiella burnetii
           CbuG_Q212]
          Length = 234

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           IN   L+++          +L++ CG G  S  LA+H   V  V++++  ++ A+ +   
Sbjct: 36  INPVRLKYIEQQITLKGKHVLDVGCGGGLLSEALAKHGAIVTGVDMSESLIDVAKNHAEQ 95

Query: 254 NHVNNVKIVRMSSKEFTQAMRR 275
             + N+       +  T+  +R
Sbjct: 96  QQL-NINYQCQDIEILTKDAQR 116


>gi|303240124|ref|ZP_07326645.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acetivibrio cellulolyticus CD2]
 gi|302592393|gb|EFL62120.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acetivibrio cellulolyticus CD2]
          Length = 296

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 21/110 (19%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNI 251
              ++E V+    G    D+L++  G+G  ++ LA      RV AV+I+K ++E AR N 
Sbjct: 112 TEILVESVIQFASGKGNIDILDVGTGSGCIAISLAYFIKNSRVTAVDISKGALEMARKNA 171

Query: 252 AANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
               V + +  +  +  +                 ++ S  F  I  +PP
Sbjct: 172 QKCGVEDRITFIESNLFD-----------------NVTSGDFDIIVSNPP 204


>gi|302340003|ref|YP_003805209.1| methyltransferase type 11 [Spirochaeta smaragdinae DSM 11293]
 gi|301637188|gb|ADK82615.1| Methyltransferase type 11 [Spirochaeta smaragdinae DSM 11293]
          Length = 242

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 30/64 (46%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V          +LE+  G+G ++L LA+    V A +I+   +   + N AA  ++N+  
Sbjct: 62  VHRELITPGSSILEIGAGSGRYTLPLAKVSGHVTATDISAQMLAHLKENAAAAGLSNIDT 121

Query: 262 VRMS 265
            ++ 
Sbjct: 122 RKLD 125


>gi|301156880|emb|CBW16356.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323128574|gb|ADX16004.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 256

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 189 QPNA-------GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q NA            ++      +      +L++ CG G+ S V A+H + V+A +++ 
Sbjct: 17  QANAYLHSAVHAAGRDLVRLAQRLSDFSHASVLDMGCGAGHASFVAAQHANSVVAYDLSA 76

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +E         H++N+ + +  +++ 
Sbjct: 77  SMLEVVAGAAEERHLSNITLRQGYAEKL 104


>gi|325681464|ref|ZP_08160990.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ruminococcus albus 8]
 gi|324106954|gb|EGC01244.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Ruminococcus albus 8]
          Length = 292

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 18/118 (15%)

Query: 195 NVHMLEWVLAATKGIQGDLL-ELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNI 251
              + +  +A  K     ++ +L  G+G  +L L +H     V AVE ++ +    + N+
Sbjct: 100 TETLADLAVAKYKKTDNIVVADLCSGSGCIALALEKHLKCREVWAVEKSEAAAGYLKDNL 159

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           A NH   VK+V     +   A       N++   D+       I  +PP    DD   
Sbjct: 160 ALNHSA-VKLVMGDVLDSDTA-------NKIPAADL-------IVCNPPYLTADDMAA 202


>gi|302521936|ref|ZP_07274278.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. SPB78]
 gi|318060717|ref|ZP_07979440.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Streptomyces sp. SA3_actG]
 gi|318075508|ref|ZP_07982840.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Streptomyces sp. SA3_actF]
 gi|333024404|ref|ZP_08452468.1| putative methyltransferase [Streptomyces sp. Tu6071]
 gi|302430831|gb|EFL02647.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Streptomyces sp. SPB78]
 gi|332744256|gb|EGJ74697.1| putative methyltransferase [Streptomyces sp. Tu6071]
          Length = 281

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 25/132 (18%)

Query: 174 AGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKG---IQGDLLELYCGNGNFSLVLARH 230
             R L  +     F          ++ W + A +    ++  +++L  G+G  +L LA+ 
Sbjct: 75  YFRYLELQVGPGVF--VPRPETESVVGWAIDAVRAMDVVEPLVVDLCTGSGAIALALAQE 132

Query: 231 FDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIH 288
             R  V AVE+++ ++   R N+     + V +    +            F  L ++D  
Sbjct: 133 VPRSTVHAVELSEDALVWTRKNVEG---SRVHLHHGDA------------FAALPELD-- 175

Query: 289 SYRFKTIFVDPP 300
             +   +  +PP
Sbjct: 176 -GQVDLVISNPP 186


>gi|242240012|ref|YP_002988193.1| modification methylase, HemK family [Dickeya dadantii Ech703]
 gi|242132069|gb|ACS86371.1| modification methylase, HemK family [Dickeya dadantii Ech703]
          Length = 310

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 24/190 (12%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           YVDER+ V  R+ I   I+N F                +        +L+L  G+G  ++
Sbjct: 105 YVDERVLV-PRSPIGELIDNRF---------------DSLLPHQPQHILDLCTGSGCIAI 148

Query: 226 VLARHF--DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRL 282
             A  F    V AV+I+  ++     NI  + V + V  +         A++ +      
Sbjct: 149 ACAHAFPEAEVDAVDISPEALAVTEQNIQQHGVEHSVTPICSDLFRSLPAIKYDLIVTNP 208

Query: 283 KDIDIHS-YRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTI 341
             +D    +     +   P  GL       +     IL  +C PD L  D  ++      
Sbjct: 209 PYVDEEDMFDLPQEYRHEPELGLAAG-DDGLDLVRRIL--ACAPDYLRDDGVLICEVGN- 264

Query: 342 ERLALFDQFP 351
             + + DQ+P
Sbjct: 265 SMVHMMDQYP 274


>gi|167839725|ref|ZP_02466409.1| hypothetical protein Bpse38_23849 [Burkholderia thailandensis
           MSMB43]
          Length = 269

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYN 250
           +   +LE            +L++ CG G  S++ A        V+A++ +  ++EAA  N
Sbjct: 26  VTRRLLESARLR---PSMRVLDIGCGTGGVSMLAAEMAGPTGTVVAIDPSDVAIEAASAN 82

Query: 251 IAANHVNNVKI 261
                ++N++ 
Sbjct: 83  AERASLHNIRF 93


>gi|163841474|ref|YP_001625879.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162954950|gb|ABY24465.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 544

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 11/110 (10%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           GI    L      T+      L+L  G G  +  L RH   V A +I++ ++   R+N+ 
Sbjct: 146 GIGQASLTLAQTTTRAPADRALDLGTGCGIQTFHLLRHVRHVTATDISERALAFTRFNLL 205

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPP 300
            N          ++          R   RL  +   +   RF  I  +PP
Sbjct: 206 LN---------ATALAVDPTDLEHRVSLRLGSLLEPVRGQRFDLIVSNPP 246


>gi|297584666|ref|YP_003700446.1| methyltransferase type 11 protein [Bacillus selenitireducens MLS10]
 gi|297143123|gb|ADH99880.1| Methyltransferase type 11 [Bacillus selenitireducens MLS10]
          Length = 242

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 200 EWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           EW+            +L+L CG G F++ LA+   +V  V+I+   +  A     + ++ 
Sbjct: 20  EWLSYTRDYLKPGASVLDLACGTGTFTIELAKSGFQVQGVDISLDMLTIADAKARSANLQ 79

Query: 258 NVKIVRMSSK 267
            +  V+   +
Sbjct: 80  -IPFVQQDMR 88


>gi|154331157|ref|XP_001562018.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134059340|emb|CAM37042.1| putative arginine N-methyltransferase, type III [Leishmania
           braziliensis MHOM/BR/75/M2904]
          Length = 426

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
           N      +       +  +LE+  G+G  S++ A+     V+AVE +      AR NIA 
Sbjct: 111 NEFYYNLLKKHIVPGESGVLEIGAGSGLLSMMAAKLEAKWVVAVEGSSEMAALARSNIAE 170

Query: 254 NHVNN-VKIVRMSSKEFTQAMRRER 277
           N +   +K++ + S E T +   E 
Sbjct: 171 NGLEGKIKVLNLLSTELTPSDLPEP 195


>gi|119714686|ref|YP_921651.1| HemK family modification methylase [Nocardioides sp. JS614]
 gi|119535347|gb|ABL79964.1| modification methylase, HemK family [Nocardioides sp. JS614]
          Length = 299

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 36/119 (30%), Gaps = 11/119 (9%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIAA 253
             +L              ++L CG G   + L  A     V A +I   +V  AR N+  
Sbjct: 90  TTLLARRAIRALEPGDLAVDLCCGTGAIGVALLAAVPGAEVHAADIDPAAVRCARRNL-- 147

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK-TIFVDPPRSGLDDATVGM 311
                    R+   +   A+  E        +    Y     I   PP +   +  V +
Sbjct: 148 ------PPDRVHEGDLYDALPGELRGRVAVVVANAPYVPTGAIATMPPEARDHEHRVAL 200


>gi|170728013|ref|YP_001762039.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shewanella woodyi ATCC 51908]
 gi|169813360|gb|ACA87944.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shewanella woodyi ATCC 51908]
          Length = 280

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEI 239
              N            ++E  L         +L+L  G G  +L LA  +   ++ AV+ 
Sbjct: 85  FMVNPTTLIPRPDTEILVETALNLPLAEAAKVLDLGTGTGAIALSLAYEKPSWQITAVDK 144

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMS 265
              +V  A+ N +   +  V I++  
Sbjct: 145 IIEAVALAKANRSHLKLPQVDIIQSD 170


>gi|114799822|ref|YP_759346.1| ubiquinone biosynthesis O-methyltransferase [Hyphomonas neptunium
           ATCC 15444]
 gi|114739996|gb|ABI78121.1| ubiquinone biosynthesis O-methyltransferase [Hyphomonas neptunium
           ATCC 15444]
          Length = 258

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            LL++ CG G  S  +AR    V  V+ ++ +++ A  + +   + N+     +++    
Sbjct: 75  RLLDIGCGGGLVSEPMARLGAAVTGVDASEANIKTALTHASQQGL-NIDYRAGTAEGLLA 133

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVD 298
           +     +     ++  H        +D
Sbjct: 134 SGEAAFDIVLNMEVVEHVADPAQFLMD 160


>gi|78067223|ref|YP_369992.1| UbiE/COQ5 methyltransferase [Burkholderia sp. 383]
 gi|77967968|gb|ABB09348.1| UbiE/COQ5 methyltransferase [Burkholderia sp. 383]
          Length = 250

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 28/68 (41%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A        +L+L CG G+ S  +A H   V+A ++A   +           + N++ 
Sbjct: 34  ADAVRATPDAAVLDLGCGAGHASFAVAPHVRDVVAYDLAAQMLATVDAAARERGLANIRT 93

Query: 262 VRMSSKEF 269
            +  +++ 
Sbjct: 94  QQGPAEQL 101


>gi|88855439|ref|ZP_01130103.1| hypothetical protein A20C1_01411 [marine actinobacterium PHSC20C1]
 gi|88815346|gb|EAR25204.1| hypothetical protein A20C1_01411 [marine actinobacterium PHSC20C1]
          Length = 207

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 22/115 (19%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
               G+LL+L CG G  +L LA       V AV++ + +++  R N     + N+  V  
Sbjct: 57  PPPGGNLLDLGCGWGPMALTLALESPHATVWAVDVNERALDLVRANAKKLSIPNINAV-- 114

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
                            L         F +I+ +PP R G D+    +    P +
Sbjct: 115 -----------------LPGDVPEDVTFMSIWSNPPIRVGKDELHNILETWLPRL 152


>gi|46130638|ref|XP_389099.1| hypothetical protein FG08923.1 [Gibberella zeae PH-1]
          Length = 256

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA-NHVNNVKIVRMSSK 267
             G LL+  CG G  S VLA+H    + ++++K  V    YN  A N  ++ +  + +  
Sbjct: 45  QDGRLLDYACGTGMLSRVLAQHTSEAIGIDLSKDMV--GVYNAQAQNQGSSRQAFQGNLA 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           + T          +  D D+          D P
Sbjct: 103 DPTDPSPAAFTDAKFFDFDVAGVGLGFHHFDKP 135


>gi|186685054|ref|YP_001868250.1| methyltransferase type 11 [Nostoc punctiforme PCC 73102]
 gi|186467506|gb|ACC83307.1| Methyltransferase type 11 [Nostoc punctiforme PCC 73102]
          Length = 258

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 10/135 (7%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +A +  +    +      +   +L+L CG G  +  +A+    V  ++ A   +E AR N
Sbjct: 20  HAFVWQYGENLLKVLNPKLGESILDLGCGTGQLTEKIAQAGAEVTGIDRASSMIETARQN 79

Query: 251 IAANHVNNVKIVRMSSKEF-----TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
                  +++     +++F       A+      + +K+ D              R   +
Sbjct: 80  -----YPHLRFDVADARDFQVLKPLDAVFSNAVLHWIKEADAAIASIHQALKPGGRFVAE 134

Query: 306 DATVGMVQAYPHILY 320
               G +QA    LY
Sbjct: 135 FGGKGNIQAIVTALY 149


>gi|326507088|dbj|BAJ95621.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 359

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 11/176 (6%)

Query: 150 QLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGI 209
                 +  +I    D V + + +  + L    I+   +  N  I   +          I
Sbjct: 130 NFQEHGHAGEIWFGAD-VMDTVAIWTKKLCVNFIQGGISMANDNIKCEV-----DDKHLI 183

Query: 210 QGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
              +L+L  GNG     LA+  F  +   + ++ ++E AR   A +    +  +     +
Sbjct: 184 DYPVLDLGTGNGLLLQALAKQGFSDLTGTDYSEGAIELARNLAARDGFTTISFLVDDVLQ 243

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324
            T+  R+ +       +D              R    ++   +V+    ++  SCN
Sbjct: 244 -TKLDRKFKIITDKGTLDAIGLHPDGRAK---RVMYWESVSNLVEPGGLVVITSCN 295


>gi|300709747|ref|YP_003735561.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
 gi|299123430|gb|ADJ13769.1| Methyltransferase type 11 [Halalkalicoccus jeotgali B3]
          Length = 206

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 20/144 (13%)

Query: 190 PNAGI-NVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            N  I N  M    L+         +L++ CG G  +  L  H + V  ++ +   +E A
Sbjct: 24  VNPFIWNEQMRGQALSMLDIDPDDRVLDVGCGTGFATEGLLEHAEDVHGLDQSPHQLEKA 83

Query: 248 RYNIAANHVNNVKIVRMSSKEF------TQAMRREREFNRLKDID--------IHSYRFK 293
                    + V      ++           +          D          I +   +
Sbjct: 84  W--AKLGKHDPVSFYLGDAERLPFADDSFDVVWSSGSIEYWPDPVAALREIKRITAPGGE 141

Query: 294 TIFVDP--PRSGLDDATVGMVQAY 315
            + V P  P+SGL       +  +
Sbjct: 142 VLVVGPNYPKSGLMQKVADSIMLF 165


>gi|294670963|ref|ZP_06735819.1| hypothetical protein NEIELOOT_02669 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307450|gb|EFE48693.1| hypothetical protein NEIELOOT_02669 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 325

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 32/156 (20%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVN--NVKIVRM 264
                 L L+   G+F++  A         V+++   ++ A+ N   N +N    KIVR 
Sbjct: 149 AAGKRFLNLFSYTGSFTVYAATGGATSSETVDLSNTYLDWAKRNFELNGINPEQHKIVRA 208

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV---QAYPH---- 317
                         F  L++      RF  I +DPP        + ++   + +P     
Sbjct: 209 DV------------FQYLQNAAAEGKRFDLIVMDPPSFSNSKKMLDILDIQRDHPKLIAG 256

Query: 318 ---------ILYISCNPDSLCRDLSILSTTHTIERL 344
                    ILY S N  S   D S+ S  + ++ +
Sbjct: 257 AMNLLASDGILYFSNNLRSFVLDNSV-SEQYAVKDI 291


>gi|251793532|ref|YP_003008261.1| phosphatidylserine synthase [Aggregatibacter aphrophilus NJ8700]
 gi|262827860|sp|C6AQR4|TRMN6_AGGAN RecName: Full=tRNA (adenine-N(6)-)-methyltransferase; AltName:
           Full=tRNA m6A37 methyltransferase
 gi|247534928|gb|ACS98174.1| phosphatidylserine synthase [Aggregatibacter aphrophilus NJ8700]
          Length = 234

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 35/136 (25%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEW---VLAATKGI--QGDLLELYCGNGNFSLVLARHF 231
              ++Q      Q N       +     +L A   +     +L+L  G+G  +L+LA+  
Sbjct: 5   GFRFKQ-----FQVNHDRCAMKVGTDGILLGAWADVMQAKQILDLGSGSGLIALMLAQRS 59

Query: 232 ---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID-- 286
               R+ AVEI   + + AR N  A                  +  +E+     +DID  
Sbjct: 60  SAESRICAVEIDPAAAQQARENALA------------------SPWKEKIQVYQQDIDSF 101

Query: 287 --IHSYRFKTIFVDPP 300
               + RF  I  +PP
Sbjct: 102 CTQTAQRFDLIVANPP 117


>gi|257053966|ref|YP_003131799.1| Methyltransferase type 11 [Halorhabdus utahensis DSM 12940]
 gi|256692729|gb|ACV13066.1| Methyltransferase type 11 [Halorhabdus utahensis DSM 12940]
          Length = 234

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
              +LE+ CG G F+++LA     V+ ++I+   ++  R    +  V  +++ +R  +  
Sbjct: 45  DSRVLEIACGTGRFTVMLAERGADVVGLDISSAMLKQGREKARSAGVQSHLEFMRGDAGR 104

Query: 269 F 269
            
Sbjct: 105 L 105


>gi|225175857|ref|ZP_03729850.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168781|gb|EEG77582.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Dethiobacter alkaliphilus AHT 1]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 21/118 (17%)

Query: 195 NVHMLEWVLAATKG-IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251
              ++E V    +      +LE+  G+G  ++ LA+     RV+AV++++ ++E A+ N 
Sbjct: 99  TEFLVEAVAEELQAHTSPRILEIGAGSGAVAVSLAKLLPKARVVAVDVSQAALEIAQKNA 158

Query: 252 AANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           A + V   V+ +                        +    F  +  +PP     D  
Sbjct: 159 ARHGVAGRVEFLAGDL-----------------YAPVADEYFDAVVSNPPYISAADIL 199


>gi|225076162|ref|ZP_03719361.1| hypothetical protein NEIFLAOT_01194 [Neisseria flavescens
           NRL30031/H210]
 gi|224952505|gb|EEG33714.1| hypothetical protein NEIFLAOT_01194 [Neisseria flavescens
           NRL30031/H210]
          Length = 270

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 27/122 (22%)

Query: 188 TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEI 239
              N  +        H++E VLA      G + +L  G+G  ++ +A  R    V A +I
Sbjct: 75  FAVNPSVLIPRPETEHLVEAVLAR-LPENGRVWDLGTGSGAIAVTVALERVDADVRASDI 133

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHS-YRFKTIFVD 298
           +  +++ AR N A      V+  + S                  D D  S  R+  I  +
Sbjct: 134 SVGALDTARQNAAELGAK-VEFAQGS----------------WFDTDRPSEGRYDVIVSN 176

Query: 299 PP 300
           PP
Sbjct: 177 PP 178


>gi|212638680|ref|YP_002315200.1| ribosomal protein L11 methyltransferase [Anoxybacillus flavithermus
           WK1]
 gi|226707856|sp|B7GKD0|PRMA_ANOFW RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|212560160|gb|ACJ33215.1| Ribosomal protein L11 methylase [Anoxybacillus flavithermus WK1]
          Length = 312

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M    L  T      ++++  G+G  S+  A     RV A+++   +VE+A+ N+  
Sbjct: 161 TTVMCIQALEKTVKKGDTVVDVGTGSGILSIAAAMLGAKRVHALDLDPVAVESAKLNVKL 220

Query: 254 NHVNNVKIV 262
           N V++V  V
Sbjct: 221 NKVHDVVTV 229


>gi|150403388|ref|YP_001330682.1| type 11 methyltransferase [Methanococcus maripaludis C7]
 gi|150034418|gb|ABR66531.1| Methyltransferase type 11 [Methanococcus maripaludis C7]
          Length = 279

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N G    ++E       G    +L++  G G  ++ LA     V AVE A    E     
Sbjct: 48  NPGRIQEIIEL---FKPGKHSTILDVGAGPGTLAVPLAGLAAHVTAVEPANGMAEVMGEY 104

Query: 251 IAANHVNNVKIVRMSSKEFTQA 272
            A   ++N+ IV    ++    
Sbjct: 105 AAQEGISNLDIVPKKWEDLDPK 126


>gi|115315349|ref|YP_764072.1| hemK methylase [Francisella tularensis subsp. holarctica OSU18]
 gi|254369839|ref|ZP_04985849.1| hypothetical protein FTAG_01187 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|115130248|gb|ABI83435.1| hemK methylase [Francisella tularensis subsp. holarctica OSU18]
 gi|157122798|gb|EDO66927.1| hypothetical protein FTAG_01187 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 284

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKI 160
           AK  Q D  T    Q I+  +        +     +L ++ L     +I  +        
Sbjct: 15  AKFNQCDISTKHDLQMIICDVLGVDKTYLYINSDKQLDKNTLKKIDEKILRLLAGEPLAY 74

Query: 161 CLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
            L  + + +++L V   TLI R                ++  VL   +     L  L+L 
Sbjct: 75  ILGYKYFWNQKLYVTKDTLIPR-----------ADTETVVATVLDDIQNKDAQLKILDLG 123

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G G  +L LA      +V+AV++ + S++ A+ N  AN++ NVK ++ S          
Sbjct: 124 TGTGAIALALAAELANSQVVAVDLYQQSLDVAKKNAQANNITNVKFIQSS---------- 173

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                     ++ + +F  I  +PP   L D  +  
Sbjct: 174 -------WYTNLDTDKFDIIVSNPPYIDLADTNIDQ 202


>gi|28394163|dbj|BAC57036.1| N, N-dimethyltransferase [Micromonospora griseorubida]
          Length = 241

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +  ++ A       LL++ CG G  +   A+ F +V  +E+A   +  AR       + +
Sbjct: 28  VAQLIRARNPGADTLLDVACGTGTHAHDFAKEFSQVEGLELAPDMIAVARR-----RLPD 82

Query: 259 VKIVRMSSKEF 269
             + +   ++F
Sbjct: 83  TPLHQGDMRDF 93


>gi|56752494|ref|YP_173195.1| ribosomal protein L11 methyltransferase [Synechococcus elongatus
           PCC 6301]
 gi|81300309|ref|YP_400517.1| ribosomal protein L11 methyltransferase [Synechococcus elongatus
           PCC 7942]
 gi|81820536|sp|Q5MZ45|PRMA_SYNP6 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|123556796|sp|Q31N39|PRMA_SYNE7 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|56687453|dbj|BAD80675.1| putative methyltransferase for ribosomal protein L11 [Synechococcus
           elongatus PCC 6301]
 gi|81169190|gb|ABB57530.1| LSU ribosomal protein L11P methyltransferase [Synechococcus
           elongatus PCC 7942]
          Length = 299

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 27/208 (12%)

Query: 92  ATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQL 151
           A +  E +    L +I+   +       +L +  L ++ W E   R             L
Sbjct: 51  AELWEETIRDRLLQEINADAADLGLPTPSLSWQTLDEEDWSESWKRHWQ--PQELGDRFL 108

Query: 152 IGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG 211
           I  A      L+ +  D  L        +    +    P   + +  LE V  A      
Sbjct: 109 IQPA-----WLEPEPSDRLLLQLDPGTAFGTGAH----PTTQLCLEGLETVPVA----DK 155

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            + ++ CG+G  ++  L     +V AV+    +V A + N A N +   +          
Sbjct: 156 VIADVGCGSGILAIGALLLGAKQVYAVDTDPLAVGATQANAALNDLEGDRF--------- 206

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVD 298
                    ++L+ +     RF     +
Sbjct: 207 --WTAIGSADQLQPLHAQGVRFDGFLCN 232


>gi|114561462|ref|YP_748975.1| putative methyltransferase [Shewanella frigidimarina NCIMB 400]
 gi|114332755|gb|ABI70137.1| putative methyltransferase [Shewanella frigidimarina NCIMB 400]
          Length = 199

 Score = 44.2 bits (103), Expect = 0.029,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 18/124 (14%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+    +G +  +L+ + G+G   L  L+R+      +E+ K +    + N+A
Sbjct: 38  VRETLFNWLANDIRGAK--VLDCFAGSGALCLEALSRYASFATIIELQKNAANQLKQNLA 95

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                N +++     +                       F  +F+DPP R  L + T+ +
Sbjct: 96  TLQCQNAEVINADCLQVLAKG--------------TPGGFDIVFIDPPFRKDLVNKTIEL 141

Query: 312 VQAY 315
           +  +
Sbjct: 142 LMQH 145


>gi|251809795|ref|ZP_04824268.1| methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251806663|gb|EES59320.1| methyltransferase [Staphylococcus epidermidis BCM-HMP0060]
 gi|329733017|gb|EGG69356.1| methyltransferase small domain protein [Staphylococcus epidermidis
           VCU028]
          Length = 241

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
              +++L  GNG   L+LA    + +  +EI +  V  AR +   N +N+ + +  M  K
Sbjct: 43  NDKVMDLCSGNGVIPLLLAAKSTQPIEGIEIQEQLVSMARRSFKLNDLNDRLTMHHMDLK 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCN 324
           +  Q                   ++  +  +PP   ++       +A+    + I CN
Sbjct: 103 DVYQTF--------------QPAQYTLVTCNPPYFKMNQNHQHQKEAHKIARHEIMCN 146


>gi|255659095|ref|ZP_05404504.1| putative N-6 adenine-specific DNA methylase [Mitsuokella multacida
           DSM 20544]
 gi|260848539|gb|EEX68546.1| putative N-6 adenine-specific DNA methylase [Mitsuokella multacida
           DSM 20544]
          Length = 252

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 16/122 (13%)

Query: 199 LEWVLAATKGI---QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           L+ VL A       +  +LEL  G G   L++A     V AVEI+    E A  N+  N 
Sbjct: 33  LDAVLLAHFPRYRSRQRVLELGTGTGVIPLLIADEVAHVEAVEISPVMAELAARNVHMNE 92

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           +          ++        R    L      +  F  +  +PP   +    V  +   
Sbjct: 93  LE---------EKIAVKEGDYRAIRSLY----PAESFDVVLANPPYRPVAHGQVNKMSGV 139

Query: 316 PH 317
             
Sbjct: 140 AR 141


>gi|220907480|ref|YP_002482791.1| type 11 methyltransferase [Cyanothece sp. PCC 7425]
 gi|219864091|gb|ACL44430.1| Methyltransferase type 11 [Cyanothece sp. PCC 7425]
          Length = 262

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 6/126 (4%)

Query: 192 AGINVHM-LEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAAR 248
           + +   M  E +          +L++ CG+G  +  ++       +L V+ ++  ++ A 
Sbjct: 13  SSLQEAMATEQLARLKLSGTERVLDIGCGDGRITAAISARLPAGSILGVDPSERMIQFAA 72

Query: 249 YNIAANHVNNVKIVRMSSKE--FTQAMRREREFNRLKDIDIHSYRFKTIFV-DPPRSGLD 305
           +N  A    N++      ++  F         FN L  +       K I+    P  G  
Sbjct: 73  HNSGAPLPPNLQFAVADVRQLGFENQFDLVLSFNALHWVPEQDIALKNIYNALKPGGGAL 132

Query: 306 DATVGM 311
              VG+
Sbjct: 133 LRFVGL 138


>gi|307154626|ref|YP_003890010.1| type 11 methyltransferase [Cyanothece sp. PCC 7822]
 gi|306984854|gb|ADN16735.1| Methyltransferase type 11 [Cyanothece sp. PCC 7822]
          Length = 259

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 4/124 (3%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           E +   +   +  +L+L CG G  +  +A+    V  ++ +   +  A  N         
Sbjct: 29  ELIEILSPQKREQVLDLGCGTGQLTHQIAQMGAIVTGIDHSPTMIAQAAKNYPDLQFRVA 88

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR----SGLDDATVGMVQAY 315
                S +    A+      + +KD                R     G       +V A+
Sbjct: 89  DGANFSVETPFDAVFSNAALHWIKDSQGAIRCIWQALRTGGRFVAEFGGKGNVEQIVSAF 148

Query: 316 PHIL 319
             +L
Sbjct: 149 KRVL 152


>gi|138896075|ref|YP_001126528.1| ribosomal protein L11 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
 gi|166223415|sp|A4IR29|PRMA_GEOTN RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|134267588|gb|ABO67783.1| Ribosomal protein L11 methyltransferase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 312

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAA 253
              M    L        +++++  G+G  S+  A      V A+++   ++++AR N+  
Sbjct: 161 TTVMCLQALEKYVHPGDNVIDVGTGSGILSIAAAMLGAHSVRALDLDPVAIDSARLNVKL 220

Query: 254 NHVNNVKIVRM-SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
           N V +V  V   +  +           N L +I +         + P   G    T G++
Sbjct: 221 NKVQHVVTVAQNNLLDHIDEQADVIVANILAEIILRFTADAYRLLKP---GGRFITSGII 277

Query: 313 QAYPHILYISCNPDSLCRDLS--ILSTTHTIERL 344
           QA                D+   +L+    IE +
Sbjct: 278 QAKKQ-------------DVKDGLLAAGFFIEEV 298


>gi|189037618|sp|A9KGL7|UBIG_COXBN RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
          Length = 234

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           IN   L+++          +L++ CG G  S  LA+H   V  V++++  ++ A+ +   
Sbjct: 36  INPVRLKYIEQQITLKGKHVLDVGCGGGLLSEALAKHGAIVTGVDMSESLIDVAKNHAEQ 95

Query: 254 NHVNNVKIVRMSSKEFTQAMRR 275
             + N+       +  T+  +R
Sbjct: 96  QQL-NINYQCQDIEILTKDAQR 116


>gi|15679211|ref|NP_276328.1| met-10+ related protein [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2622309|gb|AAB85689.1| met-10+ related protein [Methanothermobacter thermautotrophicus
           str. Delta H]
          Length = 244

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
            +++++ G G FS+ +A H    RV +VE+   S E  + NI  N V   ++ +    +E
Sbjct: 97  TVVDMFAGIGYFSIPVAVHSDPGRVYSVELNPDSFELLKSNITLNRVEGIIEPILGDCRE 156

Query: 269 FTQAMRRER 277
               +  +R
Sbjct: 157 VAPELDADR 165


>gi|332140855|ref|YP_004426593.1| Biotin biosynthesis protein BioC [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550877|gb|AEA97595.1| Biotin biosynthesis protein BioC [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 325

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 27/169 (15%)

Query: 192 AGINVHMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           A I   + E  LA   K +QG+ L++ CG G  +  L +       V+IAK  +  AR  
Sbjct: 94  ASIQRVIAEQALANLPKALQGEALDIGCGTGIHTQALVKKGATATGVDIAKGMLAQARK- 152

Query: 251 IAANHVNNVKIVRMSSKE---FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
                 ++   V+ S+ +      A         L+ +         I     R G+ + 
Sbjct: 153 ----MYSDPIFVQGSAVDLPFVDSAFSTVFSSMALQWVSDTHLVANEIARVLKRGGVAEL 208

Query: 308 TVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQF-PYTRH 355
            +        ++  S N     R ++ LS           D F P T H
Sbjct: 209 AI--------MVAGSFNELRTARKVAQLSQA---------DTFMPTTSH 240


>gi|325856899|ref|ZP_08172397.1| ribosomal protein L11 methyltransferase [Prevotella denticola CRIS
           18C-A]
 gi|325483272|gb|EGC86249.1| ribosomal protein L11 methyltransferase [Prevotella denticola CRIS
           18C-A]
          Length = 288

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAA 253
              M+  +L   +      L+  CG G  S+V AR      +  +I + SV  A +N   
Sbjct: 137 TTQMIVSLLLDQELKGKRTLDCGCGTGILSIVAARCGAREAVCYDIDEWSVRNAHHNAEL 196

Query: 254 NHVN 257
           N V 
Sbjct: 197 NGVE 200


>gi|302556670|ref|ZP_07309012.1| UbiE/COQ5 family methyltransferase [Streptomyces griseoflavus
           Tu4000]
 gi|302474288|gb|EFL37381.1| UbiE/COQ5 family methyltransferase [Streptomyces griseoflavus
           Tu4000]
          Length = 231

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA 247
            N G +  +L+   AA    +  +L+L CG+G  + + A      R L ++++ P +  A
Sbjct: 60  VNGGFDEPLLD---AAGITAEQRILDLGCGSGQTTRLAALRASRGRALGLDLSGPMLAEA 116

Query: 248 RYNIAANHVNNVKIVRMS 265
           R       V NV  V+  
Sbjct: 117 RIRAEREGVANVSFVQGD 134


>gi|311113804|ref|YP_003985026.1| RsmD family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310945298|gb|ADP41592.1| RsmD family RNA methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 203

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 19/118 (16%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             +L+ Y G+G      L+R    V  VE    + E  R N+AA            + + 
Sbjct: 46  ARVLDAYAGSGALGCEALSRGAASVEFVEKHPKACEVTRRNVAA------------TSKA 93

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ------AYPHILYI 321
              + R  + +    + +HS  +  +F+DPP +   D  + +++      A   I+ +
Sbjct: 94  ATGVTRVTQGSAQSYVAVHSGPWDLVFLDPPYAFTQDQVLDILRVIAPNLAEGAIVVV 151


>gi|295134929|ref|YP_003585605.1| Cyclopropane-fatty-acyl-phospholipid synthase [Zunongwangia
           profunda SM-A87]
 gi|294982944|gb|ADF53409.1| Cyclopropane-fatty-acyl-phospholipid synthase [Zunongwangia
           profunda SM-A87]
          Length = 258

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 202 VLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           ++   K   G+L L+L CG G  +  +A     V+ ++ ++  + +A+ N       ++ 
Sbjct: 24  LIELLKPKTGELILDLGCGAGQLTAKIASSSTEVIGMDASESMIASAKKN-----FPDLD 78

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTI 295
               ++++F    + +  F+      +  Y+   I
Sbjct: 79  FRVANAEDFNFPEKFDAIFSNAALHWVKDYKAAAI 113


>gi|293391551|ref|ZP_06635885.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952085|gb|EFE02204.1| ribosomal protein L11 methyltransferase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 294

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L         +++  CG+G  ++  L       + ++I   ++ A+R N   N V 
Sbjct: 149 LEW-LDGLGLQGKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVA 207

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +   + +S +  +         N L       Y      V P
Sbjct: 208 DRLQLCLSDERPSDLNADVVVANILAGPLKELYPVINQLVKP 249


>gi|238764616|ref|ZP_04625562.1| Ribosomal protein L11 methyltransferase [Yersinia kristensenii ATCC
           33638]
 gi|238697206|gb|EEP89977.1| Ribosomal protein L11 methyltransferase [Yersinia kristensenii ATCC
           33638]
          Length = 299

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           L+W L         +++  CG+G  ++  L     R + ++I   +++A+R N   N V
Sbjct: 154 LQW-LDGLNLQDKTVIDFGCGSGILAIAALKLGAKRAIGIDIDPQAIQASRDNAQRNGV 211


>gi|254442579|ref|ZP_05056055.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
 gi|198256887|gb|EDY81195.1| Methyltransferase domain family [Verrucomicrobiae bacterium DG1235]
          Length = 263

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L+  CG G  S  +A    +V  ++++   +E A+       +  N + V M +++
Sbjct: 65  KKVLDYCCGAGGNSRFVAACGAQVTGIDLSDSEIETAKRLANEEGLSKNTEFVVMDAEK 123


>gi|189202172|ref|XP_001937422.1| methyltransferase UbiE [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187984521|gb|EDU50009.1| methyltransferase UbiE [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 274

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 14/104 (13%)

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
             Y+        R+  +R +ENS          H+L ++          +L++ CG G  
Sbjct: 3   GPYLHGHHASVLRSHSWRTVENS--------CPHLLPYL----SNPSLKILDVGCGPGTI 50

Query: 224 SLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           S+ LA       V A++ +   +E AR +     V NV+     
Sbjct: 51  SVDLATRVPQGFVYAIDPSAEVIEKARKHAEEKGVTNVRFEVGD 94


>gi|167560945|ref|ZP_02353861.1| methyltransferase [Burkholderia oklahomensis EO147]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNI 251
              ++E V A   G    +L++ CG G  +L +AR      R + V++++P + AAR   
Sbjct: 38  AELLVEAVRA---GDGRHVLDVGCGAGATTLAVARLLGERGRCVGVDVSEPLIAAARGRA 94

Query: 252 AANHVNNVKIVRMSS 266
                     VR  +
Sbjct: 95  EREGAP-AHFVRADA 108


>gi|165977489|ref|YP_001653082.1| protein-glutamine N-methyl transferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165877590|gb|ABY70638.1| protein-glutamine N-methyl transferase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 320

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 21/109 (19%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNI 251
              L+WV    +  Q   +L+L  G G  +L LA       +++ V+    +V  A  N 
Sbjct: 130 EVALDWVYKRLESQQTLQILDLGTGTGAIALALASELGDKAQIIGVDFKLEAVTLAETNR 189

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                 NV+ ++                       + + +F  I  +PP
Sbjct: 190 QNLGFENVRFLQSD-----------------WFSALENRQFDLIVSNPP 221


>gi|163803827|ref|ZP_02197677.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4]
 gi|159172370|gb|EDP57247.1| ribosomal protein L11 methyltransferase [Vibrio sp. AND4]
          Length = 295

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L +       +++  CG+G  ++   +   ++V+ ++I   +++A+R N   N V 
Sbjct: 150 LEW-LESKDLSGKTVIDFGCGSGILAIAAIKLGAEKVIGIDIDPQALQASRDNAERNGVA 208

Query: 258 N 258
           +
Sbjct: 209 D 209


>gi|159046078|ref|YP_001534872.1| Mg-protoporphyrin IX methyl transferase [Dinoroseobacter shibae DFL
           12]
 gi|157913838|gb|ABV95271.1| magnesium-protoporphyrin O-methyltransferase [Dinoroseobacter
           shibae DFL 12]
          Length = 227

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           ML  + A   G    +L+  CG G  +  LA     V+A++I+   VE A   +   H  
Sbjct: 50  MLAQMPADLSG--KRVLDAGCGAGQMTAELAARGADVVAIDISPSLVEIAEKRLPDAHRG 107

Query: 258 NVKIVRMSS 266
            V       
Sbjct: 108 QVTFTSGDM 116


>gi|9105911|gb|AAF83789.1|AE003936_3 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 200

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
           + +   +  W++    G    +L+L+ G+G   L  ++R   R + VE     V   R  
Sbjct: 34  SRVRETLFNWLMPVLPGAH--VLDLFAGSGALGLEAVSRGAARAVLVERHAELVVRLREQ 91

Query: 251 IAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           +A     + V+IV+  + ++ Q     R      D    +  ++T+ V   R     A  
Sbjct: 92  VARLGAQDQVEIVQADALQWLQRPAAVRFDIIFLDPPFAAGVWETVVV---RLAGHVAVA 148

Query: 310 GMVQAYPHI 318
             +     +
Sbjct: 149 AWLYMESPV 157


>gi|89256989|ref|YP_514351.1| modification methylase [Francisella tularensis subsp. holarctica
           LVS]
 gi|156503188|ref|YP_001429254.1| methyltransferase, HemK family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009370|ref|ZP_02274301.1| modification methylase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368244|ref|ZP_04984264.1| modification methylase hemK [Francisella tularensis subsp.
           holarctica 257]
 gi|290954491|ref|ZP_06559112.1| methyltransferase, HemK family protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312096|ref|ZP_06802909.1| methyltransferase, HemK family protein [Francisella tularensis
           subsp. holarctica URFT1]
 gi|89144820|emb|CAJ80159.1| modification methylase [Francisella tularensis subsp. holarctica
           LVS]
 gi|134254054|gb|EBA53148.1| modification methylase hemK [Francisella tularensis subsp.
           holarctica 257]
 gi|156253791|gb|ABU62297.1| methyltransferase, HemK family protein [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 284

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKI 160
           AK  Q D  T    Q I+  +        +     +L ++ L     +I  +        
Sbjct: 15  AKFNQCDISTKHDLQMIICDVLGVDKTYLYINSDKQLDKNTLKKIDEKILRLLAGEPLAY 74

Query: 161 CLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
            L  + + +++L V   TLI R                ++  VL   +     L  L+L 
Sbjct: 75  ILGYKYFWNQKLYVTKDTLIPR-----------ADTETVVATVLDDIQNKDAQLKILDLG 123

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G G  +L LA      +V+AV++ + S++ A+ N  AN++ NVK ++ S          
Sbjct: 124 TGTGAIALALAAELANSQVVAVDLYQQSLDVAKKNAQANNITNVKFIQSS---------- 173

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                     ++ + +F  I  +PP   L D  +  
Sbjct: 174 -------WYTNLDTDKFDIIVSNPPYIDLADTNIDQ 202


>gi|332711129|ref|ZP_08431063.1| magnesium protoporphyrin O-methyltransferase [Lyngbya majuscula 3L]
 gi|332350111|gb|EGJ29717.1| magnesium protoporphyrin O-methyltransferase [Lyngbya majuscula 3L]
          Length = 228

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA--AN 254
            ++ W+ A        + +  CG G+ S+ LA+    V A +I++  V  A+        
Sbjct: 48  KVISWLEADGNLSGLSICDAGCGVGSLSIPLAKASAIVFASDISQKMVGEAQVRAKESLG 107

Query: 255 HVNNVKIVRMSSK 267
           + +N+  +    +
Sbjct: 108 NTDNLSFMVKDLE 120


>gi|319936942|ref|ZP_08011352.1| modification methylase [Coprobacillus sp. 29_1]
 gi|319807878|gb|EFW04457.1| modification methylase [Coprobacillus sp. 29_1]
          Length = 284

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 19/121 (15%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIA 252
            ++L  +    +  +  DL ++  G+G  ++ LA    +  V+A +I+K ++E AR N  
Sbjct: 100 ENILYKIDDYFEDYESIDLCDVGTGSGAIAISLALEESKLNVVATDISKEALEVARLNAQ 159

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                N++  +                  L+ +     +      +PP   ++     +V
Sbjct: 160 ELGA-NIEFYQGDM---------------LEPLIDREMKVDIFVSNPPYIPVEQDIESVV 203

Query: 313 Q 313
           +
Sbjct: 204 K 204


>gi|296284248|ref|ZP_06862246.1| SAM-dependent methyltransferase [Citromicrobium bathyomarinum
           JL354]
          Length = 299

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 18/124 (14%)

Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVE 245
            F    A +   M   +         ++   Y G G  +L        V  V+ +K SV 
Sbjct: 102 GFFPDMAPVWEWMRGELAGKPDAQTLNMF-GYTGVGTLAL---SQCGPVTHVDASKKSVA 157

Query: 246 AARYNIAANHVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
            AR N A   + +  ++ +   + +F  A R  R  NR          +  I +DPP+ G
Sbjct: 158 QARENAALAGMEDRPIRWLVDDAAKF--AAREVRRENR----------YDGIILDPPKFG 205

Query: 304 LDDA 307
               
Sbjct: 206 RGPK 209


>gi|291523521|emb|CBK81814.1| Putative RNA methylase family UPF0020 [Coprococcus catus GD/7]
          Length = 498

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGN--FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +++       D+L+ +CG           +    +  V+I   +++ AR N +  +V + 
Sbjct: 341 IVSEYLADDADVLDPFCGTATLLIERYRKKKAAHLYGVDIFGEAIDGARENASLANVPSY 400

Query: 260 KIVRMSSKEFTQAMRREREFNRLK 283
             +     EF+     +     L 
Sbjct: 401 -FINKDFAEFSHNYTFDEVLTELP 423


>gi|145636865|ref|ZP_01792530.1| hypothetical protein CGSHiHH_01252 [Haemophilus influenzae PittHH]
 gi|145269946|gb|EDK09884.1| hypothetical protein CGSHiHH_01252 [Haemophilus influenzae PittHH]
          Length = 268

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +  N  +L+   A        +L++ CG G F++ LA+    V A++ +   ++      
Sbjct: 45  SAYNQQLLQ---AMNVQTDETVLDIGCGPGTFAVPLAQQGSTVYALDYSNGMLDCLAQFK 101

Query: 252 AANHVNNVKIVR 263
               ++N+    
Sbjct: 102 QKLGLHNLTTFH 113


>gi|119718182|ref|YP_925147.1| methyltransferase small [Nocardioides sp. JS614]
 gi|119538843|gb|ABL83460.1| methyltransferase small [Nocardioides sp. JS614]
          Length = 222

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 12/129 (9%)

Query: 200 EWVLA-ATKGIQGDLLELYCGNGNFS-LVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           EW          G +LEL  G G    L +A     ++ V++   + + AR N  A  + 
Sbjct: 47  EWAAEILADAPPGPVLELCAGAGQIGLLAVAGSDRPLVCVDVNPVACDYARANAQAAGLA 106

Query: 258 N--------VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           +        V  V   S+ F   +       R  +          + +D    G+  A +
Sbjct: 107 DRVEVREGSVHEVLGDSERFALVIADPPWVRR--EEVARFPEDPVLAIDGGADGMALAWL 164

Query: 310 GMVQAYPHI 318
            +  A PH+
Sbjct: 165 CIDTARPHL 173


>gi|83591583|ref|YP_425335.1| tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170]
 gi|83574497|gb|ABC21048.1| tRNA/rRNA cytosine-C5-methylase [Rhodospirillum rubrum ATCC 11170]
          Length = 454

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 20/145 (13%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLA---RHFDRVLAVEIAKPSVEAARYNIAA 253
            M+  + A   G+   +L+L  G G  +L LA    +   ++A +I++  +  A+  +  
Sbjct: 227 QMVALLCAVAPGMS--VLDLCAGAGGKTLALAAGMENKGTLVATDISEGRLARAQTRLQR 284

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFN---------------RLKDIDIHSYRFKTIFVD 298
             V+NV    +  +      RR+  F+               R  D            ++
Sbjct: 285 AGVHNVTRKVLDPETRKWLKRRKASFDVVLVDAPCSGTGTWRRNPDARWKLTPDTISALN 344

Query: 299 PPRSGLDDATVGMVQAYPHILYISC 323
             +S L D    +V+    ++Y +C
Sbjct: 345 AEQSALLDRAAALVKPGGRLVYATC 369


>gi|73749105|ref|YP_308344.1| arsenite S-adenosylmethyltransferase [Dehalococcoides sp. CBDB1]
 gi|289433081|ref|YP_003462954.1| methyltransferase type 11 [Dehalococcoides sp. GT]
 gi|73660821|emb|CAI83428.1| SAM-dependent methyltransferase UbiE/COQ5 family [Dehalococcoides
           sp. CBDB1]
 gi|288946801|gb|ADC74498.1| Methyltransferase type 11 [Dehalococcoides sp. GT]
          Length = 278

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 35/146 (23%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR----HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +  A       +L+L  G G F   LA        +V+ V++    +  A+ N       
Sbjct: 67  LALAEIKEGETVLDLGSG-GGFDCFLASPRVGEKGKVIGVDMTPQMLSIAKRNAFQGGYT 125

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           NV+ ++   +          E N +  I         I + P +  +    + +++    
Sbjct: 126 NVEFIQGEIENL------PLEANSIDLI----ISNCVINLSPDKPAVFKEAMRVLKPGGR 175

Query: 318 IL--------------------YISC 323
           I+                    Y+SC
Sbjct: 176 IVISDIVLEGDLPDEVRKSAAAYVSC 201


>gi|58582612|ref|YP_201628.1| methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84624497|ref|YP_451869.1| methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188575873|ref|YP_001912802.1| methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427206|gb|AAW76243.1| methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368437|dbj|BAE69595.1| methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520325|gb|ACD58270.1| methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 280

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 191 NAGINVHMLEWVL---AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           N  +   M   +    AA   +   L++L CG G  +   AR    VLA + +   VE  
Sbjct: 39  NNALIQRMRTTLWDTVAAALPVGSRLIDLGCGTGLDAGEFARRGYSVLATDWSPAMVERT 98

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKD-IDIHSYRFKTIFVDPPRSGLDD 306
           R+  A   +          +  T A    ++ +RL+   D     F  +   P    +  
Sbjct: 99  RHRAATQGLE---------ERLTAAHVGIQQLDRLEGSFDGMYSNFGPLNCAPDLPAVAA 149

Query: 307 ATVGMVQAYPHILY 320
               +++A   +++
Sbjct: 150 ECARLLRADGCLVF 163


>gi|163940642|ref|YP_001645526.1| methyltransferase type 11 [Bacillus weihenstephanensis KBAB4]
 gi|229012150|ref|ZP_04169329.1| Methyltransferase type 11 [Bacillus mycoides DSM 2048]
 gi|229167624|ref|ZP_04295361.1| Methyltransferase type 11 [Bacillus cereus AH621]
 gi|163862839|gb|ABY43898.1| Methyltransferase type 11 [Bacillus weihenstephanensis KBAB4]
 gi|228615844|gb|EEK72932.1| Methyltransferase type 11 [Bacillus cereus AH621]
 gi|228749238|gb|EEL99084.1| Methyltransferase type 11 [Bacillus mycoides DSM 2048]
          Length = 264

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +   V          LL++  G G+ + +LA  F  V+A+++ +  +E A+  I  N   
Sbjct: 33  LQYVVQQVETRHNTRLLDIATGGGHVANLLAPMFKEVVALDLTEKMLEKAKGFIEGNGHE 92

Query: 258 NVKIVRMSSKEFTQA 272
           NV  V   ++    A
Sbjct: 93  NVSFVAGHAERLPFA 107


>gi|147669867|ref|YP_001214685.1| arsenite S-adenosylmethyltransferase [Dehalococcoides sp. BAV1]
 gi|146270815|gb|ABQ17807.1| Methyltransferase type 11 [Dehalococcoides sp. BAV1]
          Length = 277

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 35/146 (23%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR----HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +  A       +L+L  G G F   LA        +V+ V++    +  A+ N       
Sbjct: 66  LALAEIKEGETVLDLGSG-GGFDCFLASPRVGEKGKVIGVDMTPQMLSIAKRNAFQGGYT 124

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           NV+ ++   +          E N +  I         I + P +  +    + +++    
Sbjct: 125 NVEFIQGEIENL------PLEANSIDLI----ISNCVINLSPDKPAVFKEAMRVLKPGGR 174

Query: 318 IL--------------------YISC 323
           I+                    Y+SC
Sbjct: 175 IVISDIVLEGDLPDEVRKSAAAYVSC 200


>gi|332526088|ref|ZP_08402226.1| Mg-protoporphyrin IX methyl transferase [Rubrivivax benzoatilyticus
           JA2]
 gi|332109931|gb|EGJ10559.1| Mg-protoporphyrin IX methyl transferase [Rubrivivax benzoatilyticus
           JA2]
          Length = 233

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AAN 254
             +L W+    +G    +L+  CG G  S+ LAR    V+A++++   V  AR  +  + 
Sbjct: 50  TTLLSWLPQDLRGR--RVLDAGCGTGAASIELARRGAEVVAIDLSPTLVGYARERLPESL 107

Query: 255 HVNNVKIVRMSSKEFT 270
              ++        +  
Sbjct: 108 GPGSIDFRSGDMLDAA 123


>gi|307700827|ref|ZP_07637852.1| RNA methyltransferase, RsmD family [Mobiluncus mulieris FB024-16]
 gi|307613822|gb|EFN93066.1| RNA methyltransferase, RsmD family [Mobiluncus mulieris FB024-16]
          Length = 187

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 18/110 (16%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L+++ G+G   L  L+R     + V+ A+ +V+  R N AA      V++V   +  
Sbjct: 45  ARVLDIFAGSGALGLEALSRGATDAMLVDSARGAVQVLRANAAALSAGERVQVVGADAVR 104

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS---GLDDATVGMVQAY 315
           F  ++               + RF  +F+DPP +   G+ D  +  V  +
Sbjct: 105 FAASLGA-------------NERFDLVFIDPPYALDSGILDQVLSSVATH 141


>gi|298674701|ref|YP_003726451.1| type 11 methyltransferase [Methanohalobium evestigatum Z-7303]
 gi|298287689|gb|ADI73655.1| Methyltransferase type 11 [Methanohalobium evestigatum Z-7303]
          Length = 264

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 16/156 (10%)

Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L  G G    + A   D    V+ V++    VE A+ N   ++  NV+      +  
Sbjct: 79  VLDLGSGAGFDCFLAADKVDEDGLVIGVDMTPDMVEKAKNNAVKDNYTNVEFRLGEIENL 138

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTI-----FVDPPRSGLDDATVGMVQAYPHI-----L 319
                          I++   + K        + P    +    V +      I      
Sbjct: 139 PLDDNSVDVVISNCVINLSPDKEKVFNDVYRVLKPDGRLVVSDIVLLQDLPESIRNSIEA 198

Query: 320 YISCNPDSLCR-DLSILSTTHTIERLALFD--QFPY 352
           Y+ C   +L + D   L      + + + D  +FP+
Sbjct: 199 YVGCISGALKKEDYLDLIEKAGFKDIQIIDESEFPH 234


>gi|291541913|emb|CBL15023.1| ribosomal protein L11 methyltransferase [Ruminococcus bromii L2-63]
          Length = 311

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYN 250
             + + M E  L         +L++ CG+G   +  L    DR + V+I + +V  A  N
Sbjct: 157 TRLCLEMCEKYLKE----GDSVLDVGCGSGILGIATLLLGADRAVGVDIDETAVRTAAEN 212

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDI 285
              N   +    +  S  +  +        N + D 
Sbjct: 213 AEINGVADRFTAICGSFTDKVEGKYDIVLANIVADA 248


>gi|170724872|ref|YP_001758898.1| ribosomal protein L11 methyltransferase [Shewanella woodyi ATCC
           51908]
 gi|226710114|sp|B1KQE8|PRMA_SHEWM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|169810219|gb|ACA84803.1| ribosomal protein L11 methyltransferase [Shewanella woodyi ATCC
           51908]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+ +     + ++++  CG+G  ++  L     +V  ++I   +++A++ N   N V 
Sbjct: 149 LEWLDSLNFDNK-EVIDFGCGSGILAVAALKLGATKVTGIDIDYQAIDASKANAERNGVE 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|270308584|ref|YP_003330642.1| methyltransferase, UbiE/COQ5 family [Dehalococcoides sp. VS]
 gi|270154476|gb|ACZ62314.1| methyltransferase, UbiE/COQ5 family [Dehalococcoides sp. VS]
          Length = 277

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 35/146 (23%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR----HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +  A       +L+L  G G F   LA        +V+ V++    +  A+ N       
Sbjct: 67  LALAEIKAGETVLDLGSG-GGFDCFLASPRVGAKGKVIGVDMTPQMLSIAKRNAFQGGYT 125

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           NV+ ++   +                D          I + P +  +    + +++    
Sbjct: 126 NVEFIQGEIENL----------PLESDSIDLIISNCVINLSPDKPAVFKEALRVLKPGGR 175

Query: 318 IL--------------------YISC 323
           I+                    Y+SC
Sbjct: 176 IVISDIVLEGELPEEVRKSAAAYVSC 201


>gi|157414106|ref|YP_001484972.1| SAM-binding motif-containing protein [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388681|gb|ABV51386.1| SAM (and some other nucleotide) binding motif [Prochlorococcus
           marinus str. MIT 9215]
          Length = 311

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIEN---SFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
             +D + ERL      L +         F +        +++W           +L++ C
Sbjct: 42  WTQDKLLERLWGEHIHLGFYNSGKKNIDFRKAKVQFVHELVKWSGLDKLPKGSRILDVGC 101

Query: 219 GNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G G  S +LA+++   V  + I+   V+ AR  +  N + N     M + + 
Sbjct: 102 GIGGSSRILAKNYGFNVTGITISPAQVKRARE-LTPNGL-NCNFQVMDALDL 151


>gi|254374924|ref|ZP_04990405.1| modification methylase [Francisella novicida GA99-3548]
 gi|151572643|gb|EDN38297.1| modification methylase [Francisella novicida GA99-3548]
          Length = 284

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKI 160
           AK  Q D  T    Q I+  +        +     +L ++ L     +I  +        
Sbjct: 15  AKFNQCDISTKHDLQMIICDVLGVDKTYLYINSDKQLDKNTLKKIDEKILRLLAGEPLAY 74

Query: 161 CLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
            L  + + +++L V   TLI R                ++  VL   +     L  L+L 
Sbjct: 75  ILGYKYFWNQKLYVTKDTLIPR-----------ADTETVVATVLDDIQNKDAQLKILDLG 123

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G G  +L LA      +V+AV++ + S++ A+ N  AN++ NVK ++ S          
Sbjct: 124 TGTGAIALALAAELANSQVVAVDLYQQSLDVAKKNAQANNITNVKFIQSS---------- 173

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                     ++ + +F  I  +PP   L D  +  
Sbjct: 174 -------WYTNLDTDKFDIIVSNPPYIDLADTNIDQ 202


>gi|254373463|ref|ZP_04988951.1| hypothetical protein FTCG_01058 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571189|gb|EDN36843.1| hypothetical protein FTCG_01058 [Francisella novicida GA99-3549]
          Length = 284

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKI 160
           AK  Q D  T    Q I+  +        +     +L ++ L     +I  +        
Sbjct: 15  AKFNQFDISTKHDLQMIICDVLGVDKAYLYINSDKQLDKNTLKKIDEKILRLLAGEPLAY 74

Query: 161 CLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
            L  + + +++L V   TLI R                ++  VL   +     L  L+L 
Sbjct: 75  ILGYKYFWNQKLYVTKDTLIPR-----------ADTETVVATVLDDIQNKDAQLKILDLG 123

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G G  +L LA      +V+AV++ + S++ A+ N  AN++ NVK ++ S          
Sbjct: 124 TGTGAIALALAAELANSQVVAVDLYQQSLDVAKKNAQANNITNVKFIQSS---------- 173

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                     ++ + +F  I  +PP   L D  +  
Sbjct: 174 -------WYTNLDTDKFDIIVSNPPYIDLADTNIDQ 202


>gi|145297572|ref|YP_001140413.1| ribosomal RNA small subunit methyltransferase C [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|226712987|sp|A4SIE3|RSMC_AERS4 RecName: Full=Ribosomal RNA small subunit methyltransferase C;
           AltName: Full=16S rRNA m2G1207 methyltransferase;
           AltName: Full=rRNA (guanine-N(2)-)-methyltransferase
           rsmC
 gi|142850344|gb|ABO88665.1| ribosomal RNA small subunit methyltransferase C [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 342

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +LAA   + G+LL+  CG G    VLA+      V  V+I+  ++E++R  +A N +  
Sbjct: 195 LLAAVPPMTGELLDFGCGAGVIGSVLAKRNPGLEVKMVDISALALESSRRTLAINGLQG 253


>gi|159038367|ref|YP_001537620.1| methyltransferase type 11 [Salinispora arenicola CNS-205]
 gi|157917202|gb|ABV98629.1| Methyltransferase type 11 [Salinispora arenicola CNS-205]
          Length = 271

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 13/139 (9%)

Query: 198 MLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANH 255
           +   + A      G+ +L++  G G  +L+LA  +   V  V++A P+V AA +   +  
Sbjct: 39  LTRRLAAQLAPASGELVLDVASGRGASALLLATEYGCTVTGVDLAGPNVAAATHTARSAG 98

Query: 256 V-NNVKIVRMSSKEF------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDAT 308
           + + V   +  ++           +  E  F    D    +     + V   R G+ D T
Sbjct: 99  LADRVLFRQGDAERLPIGPASADVVICECAFCTFPDKPTAAGELARVLVPGGRLGVSDVT 158

Query: 309 VGMVQAYPHI----LYISC 323
               Q  P +     +I+C
Sbjct: 159 AVPDQLPPELTGLGAWIAC 177


>gi|91791810|ref|YP_561461.1| ribosomal protein L11 methyltransferase [Shewanella denitrificans
           OS217]
 gi|123166517|sp|Q12S38|PRMA_SHEDO RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|91713812|gb|ABE53738.1| LSU ribosomal protein L11P methyltransferase [Shewanella
           denitrificans OS217]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L +      ++++  CG+G  ++  L     +V  V+I   +++A++ N   N+V 
Sbjct: 149 LEW-LDSLDLSDEEVIDFGCGSGILAIAALKLGAKKVTGVDIDYQAIDASQANAVRNNVQ 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|51894173|ref|YP_076864.1| hypothetical protein STH3037 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857862|dbj|BAD42020.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 195

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 213 LLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           L ++ CG G F+L  A+       V  ++I++  +E  R    A  V+NV  V    ++ 
Sbjct: 39  LADVGCGPGWFALPAAKRLPPGGVVYGIDISEEMLEHLRRRARAQGVDNVVPVLAEEEDE 98

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                   E   + D+            +  R         +V   P 
Sbjct: 99  WPVPTESCEAVLIADVYHEVDPASMFIGEVKRILRPGGVCLVVDWKPE 146


>gi|13474485|ref|NP_106053.1| aklanonic acid methyl transferase [Mesorhizobium loti MAFF303099]
 gi|14025238|dbj|BAB51839.1| mlr5379 [Mesorhizobium loti MAFF303099]
          Length = 281

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNN 258
           V A      G++L++ CG G  +L +AR        + ++I++P V  A        V N
Sbjct: 42  VDAGYPREGGNVLDIGCGAGATTLAMARRVGNDGNCVGLDISQPLVALATERTKLGEVAN 101

Query: 259 VKIVRMSS 266
                  +
Sbjct: 102 ASFEVGDA 109


>gi|294139169|ref|YP_003555147.1| hypothetical protein SVI_0398 [Shewanella violacea DSS12]
 gi|293325638|dbj|BAJ00369.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 361

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 209 IQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266
           +   +L L+          A     RV+ ++ +  ++ A + N   N V++  + V+  +
Sbjct: 172 LNKTVLNLFSYTCGIGTAAAVGGASRVVNIDFSSFALAAGKTNAELNDVSDVCEFVQSDA 231

Query: 267 KEFTQAMRREREFNRL-----KDIDIHSYRFKTIFVDPPRSGLDD 306
               + +   +   R      K   +   +F  +F+DPPR     
Sbjct: 232 FPALRQLAGLKVGGRRNQKLPKYPKMPRTQFDLVFLDPPRFAKSP 276


>gi|74316854|ref|YP_314594.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thiobacillus denitrificans ATCC 25259]
 gi|123773035|sp|Q3SKJ2|PIMT_THIDA RecName: Full=Protein-L-isoaspartate O-methyltransferase; AltName:
           Full=L-isoaspartyl protein carboxyl methyltransferase;
           AltName: Full=Protein L-isoaspartyl methyltransferase;
           AltName: Full=Protein-beta-aspartate methyltransferase;
           Short=PIMT
 gi|74056349|gb|AAZ96789.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Thiobacillus denitrificans ATCC 25259]
          Length = 226

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 11/128 (8%)

Query: 183 IENSFTQP--NAGINVHMLEWVLAATKGIQ---GDLLELYCGNGNFSLVLARHFDRVLAV 237
           +   F Q   N  I   M E       G     G +LE+  G G  + VL +    V+++
Sbjct: 63  LPIGFGQTISNPYIVARMAELARHGENGKGQTLGRVLEIGLGCGYQAAVLGKLAREVVSI 122

Query: 238 EIAKPSVEAARYNIAANHVNNVKIVRMS----SKEFTQ--AMRREREFNRLKDIDIHSYR 291
           E     V   R  +    VNNVK         +++F    A+     F  +    +    
Sbjct: 123 ERIAALVGKTRARLRELRVNNVKPKHGDGMNGARDFAPFDAIVLAAAFAEVPQALLAQLA 182

Query: 292 FKTIFVDP 299
                V P
Sbjct: 183 DGGRLVMP 190


>gi|11993696|gb|AAG42853.1|AF323753_8 SnogM [Streptomyces nogalater]
          Length = 278

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 14/128 (10%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIA 252
           +   M E +     G    +L++ CG G  ++ LAR     V+ + I+   V  A  +  
Sbjct: 51  LTEMMTERI---EVGPGQRVLDIGCGTGAPAVQLARATGAEVVGITISPEQVRLATAHAE 107

Query: 253 ANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                  V      +           E     D     + F++IF  P R         +
Sbjct: 108 REGVAERVTFRCADA---------SAELPFPADSFDAVWFFESIFHLPDRLTALRRAAEV 158

Query: 312 VQAYPHIL 319
           ++    + 
Sbjct: 159 LRPGGRLA 166


>gi|83816149|ref|YP_445152.1| RNA methylase family protein [Salinibacter ruber DSM 13855]
 gi|83757543|gb|ABC45656.1| Putative RNA methylase family UPF0020 [Salinibacter ruber DSM
           13855]
          Length = 156

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 198 MLEWVLAATKGIQGDLL-ELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
           +++ +L      + D+L +L  G+G   +  AR H  R + +EI    V+ AR N     
Sbjct: 10  VVDRMLELADVDETDVLYDLGSGDGRIVIRAARTHGARGVGIEIDPDLVKKARKNAKEAG 69

Query: 256 VNN-VKIVRMSSKE 268
           V + V+  +    E
Sbjct: 70  VADLVEFRQGDLFE 83


>gi|77747528|ref|NP_298269.2| hypothetical protein XF0979 [Xylella fastidiosa 9a5c]
          Length = 208

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
           + +   +  W++    G    +L+L+ G+G   L  ++R   R + VE     V   R  
Sbjct: 42  SRVRETLFNWLMPVLPGAH--VLDLFAGSGALGLEAVSRGAARAVLVERHAELVVRLREQ 99

Query: 251 IAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           +A     + V+IV+  + ++ Q     R      D    +  ++T+ V   R     A  
Sbjct: 100 VARLGAQDQVEIVQADALQWLQRPAAVRFDIIFLDPPFAAGVWETVVV---RLAGHVAVA 156

Query: 310 GMVQAYPHI 318
             +     +
Sbjct: 157 AWLYMESPV 165


>gi|70732053|ref|YP_261809.1| HemK family modification methylase [Pseudomonas fluorescens Pf-5]
 gi|68346352|gb|AAY93958.1| modification methylase, HemK family [Pseudomonas fluorescens Pf-5]
          Length = 326

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 20/134 (14%)

Query: 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA 228
           + L +          E  F  P+      ++   L     +   + ++ CG G  +L++A
Sbjct: 106 DELLLVHSAYPTDDAEAVFFGPDTYRFARLIVACLQERLTVVRRVADIGCGTGAGALLVA 165

Query: 229 RH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           R     +VLA++I   ++     N     V NV +                       +D
Sbjct: 166 RARPEAQVLALDINPRALRYCAINAELAGVGNVGVYHSDV------------------LD 207

Query: 287 IHSYRFKTIFVDPP 300
                F  I  +PP
Sbjct: 208 GVEGNFDLILANPP 221


>gi|118581797|ref|YP_903047.1| type 12 methyltransferase [Pelobacter propionicus DSM 2379]
 gi|118504507|gb|ABL00990.1| Methyltransferase type 12 [Pelobacter propionicus DSM 2379]
          Length = 239

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            E            +L++    G  + +LA    +V  +E+ +  VE A+       + N
Sbjct: 62  YESWFYNHVETSWTVLDVGSNTGIMAHLLAGKVAKVYGIELQQSLVEEAKKTFQ---LPN 118

Query: 259 VKIVRMSSKEFT 270
           ++     +  F 
Sbjct: 119 IEYFCADATCFF 130


>gi|321477153|gb|EFX88112.1| hypothetical protein DAPPUDRAFT_221341 [Daphnia pulex]
          Length = 275

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           A +   ++E++     G     ++  CG+G  SL+L+ HF +VLA +I+   +E A+   
Sbjct: 28  ARLADRIVEFLKEKYTGDLSVCVDAGCGSGQCSLLLSSHFQKVLATDISASQIEVAK--- 84

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           + NH  N++ V   +++        +  N    +  H +     F +  R    +  V +
Sbjct: 85  SQNHPPNIEFVASPAEQCPVEDGSVQLVN--ACVAAHWFDLPAFFKESDRILCPNGIVAI 142

Query: 312 VQAYP 316
               P
Sbjct: 143 AAYVP 147


>gi|320160475|ref|YP_004173699.1| hypothetical protein ANT_10650 [Anaerolinea thermophila UNI-1]
 gi|319994328|dbj|BAJ63099.1| hypothetical protein ANT_10650 [Anaerolinea thermophila UNI-1]
          Length = 192

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           E V        G  L+L CG+G   L LA+   +V+ ++++  +V  AR  +   ++  
Sbjct: 31  ELVAFIQSHPSGRALDLGCGSGTNLLTLAKAGWQVVGIDLSLLAVWRARQRLRRENMKG 89


>gi|317032892|ref|XP_001394550.2| RNA methylase family protein [Aspergillus niger CBS 513.88]
          Length = 240

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 16/125 (12%)

Query: 183 IENSFTQPNAG-INVHMLEWVLAATKGIQGDLLELYCGNG--NFSLVLARHFDRVLAVEI 239
            ++++       +   + E +  +    +  L++ + G G  + +  L+  + RV A+E 
Sbjct: 48  TDDAWFGVTPEPVANKIAEHMAQSAPAGRSILVDAFAGAGGNSIAFALSGRWKRVYAIEK 107

Query: 240 AKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
               ++ A++N     V + +        E  +        N+LKD+      +  +F  
Sbjct: 108 NPAVLQCAKHNAKIYGVADKITWFEGDCFEIIK--------NQLKDL----APYSVVFAS 155

Query: 299 PPRSG 303
           PP  G
Sbjct: 156 PPWGG 160


>gi|291518392|emb|CBK73613.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Butyrivibrio fibrisolvens 16/4]
          Length = 254

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEF 269
           ++L++ CG G F ++L +   RV  V++ +  +  A   I    ++  N+K +   +++ 
Sbjct: 62  NILDVGCGTGYFEVLLGKLGHRVTGVDLTEEMIVKANEMIQMYGLDTENIKAIIGDAEKL 121


>gi|288554640|ref|YP_003426575.1| hypothetical protein BpOF4_08125 [Bacillus pseudofirmus OF4]
 gi|288545800|gb|ADC49683.1| hypothetical protein BpOF4_08125 [Bacillus pseudofirmus OF4]
          Length = 246

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 14/93 (15%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            +G++L+L  GNG   LVL+      +  VEI +   + AR N   N +N          
Sbjct: 45  QKGNILDLCSGNGVIPLVLSTRTKATITGVEIQERLWDMARRNEELNKLN---------- 94

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              Q +  E          I    F  +  +PP
Sbjct: 95  ---QQLHFELADLNHLPPSIKKGSFDVVTCNPP 124


>gi|261496508|ref|ZP_05992888.1| protein-glutamine N-methyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307711|gb|EEY09034.1| protein-glutamine N-methyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 363

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 195 NVHMLEWVLAATKGIQGD-----LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEA 246
              ++E  L        +     +L+L  G G  +L LA        ++ V+    +V+ 
Sbjct: 176 TERLVELALEYANKRLENQKMLQILDLGTGTGAIALALASELGEKAQIIGVDFQNEAVQL 235

Query: 247 ARYNIAANHVNNVKIVRMS 265
           A  N     +N V  ++  
Sbjct: 236 AEENRQHLGLNQVTFLQSD 254


>gi|302346748|ref|YP_003815046.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
 gi|302150375|gb|ADK96636.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
          Length = 558

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 42/232 (18%)

Query: 99  LLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKT 158
           L++A +  I++   + D  +   +Y +L+ +   E   R+          I +       
Sbjct: 104 LVKAAMEAIEHENPRMDGVLPKEVYGQLVPEEEPELLSRIVRVFKDIPENISID------ 157

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
                + Y      +    L   Q   +F    A +  +M+E +  AT   +   L+  C
Sbjct: 158 --IFGQIY---EYFLGNFALAEGQGGGAFY-TPASVVQYMVEVLQPATGDKK--FLDPAC 209

Query: 219 GNGNFSLVLARHFDR------------VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           G+G   +  AR+  R               VE    +V+ A+ N+  N   NV+   M +
Sbjct: 210 GSGGMFVQAARYMHRHNTSNEQMMNFRCYGVEKEPDTVKLAKMNLLLN---NVRGEIMEA 266

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
             F              D      +F  +  +PP   +D+  V  V      
Sbjct: 267 NSFYS------------DPYNAVGQFDYVMANPP-FNVDEVVVERVTDDARF 305


>gi|239831821|ref|ZP_04680150.1| Protein-L-isoaspartate O-methyltransferase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824088|gb|EEQ95656.1| Protein-L-isoaspartate O-methyltransferase [Ochrobactrum
           intermedium LMG 3301]
          Length = 222

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG G  + +L++    V+ +E       AA   +A    +NV IV     E    
Sbjct: 87  VLDVGCGTGYSAAILSKLAGSVIGLESDSVLSAAATARLAELGYDNVVIVSG---ELQAG 143

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
              E  ++ +       +    +       G   A  G   A    +Y+
Sbjct: 144 YPSEAPYDVIVIEGAVDFIPDALLAQLRDGGRLVAVEGRGNAGVARIYV 192


>gi|229820053|ref|YP_002881579.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
 gi|229565966|gb|ACQ79817.1| Methyltransferase type 11 [Beutenbergia cavernae DSM 12333]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 15/93 (16%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R   NS          ++L  +         D+L++ CG G  +  L ++    R
Sbjct: 32  RSHTWRTAANS--------AAYLLPELAEGM-----DVLDVGCGPGTITADLGKYVAPGR 78

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           V+ ++ A+  +  A    AA  V+NV       
Sbjct: 79  VVGIDTAEDVLVRAAEFAAARDVDNVLFETGDV 111


>gi|208779476|ref|ZP_03246821.1| methyltransferase, HemK family [Francisella novicida FTG]
 gi|208744437|gb|EDZ90736.1| methyltransferase, HemK family [Francisella novicida FTG]
          Length = 284

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 102 AKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRL-RDALHARKYQIQLIGRANKTKI 160
           AK  Q D  T    Q I+  +        +     +L ++ L     +I  +        
Sbjct: 15  AKFNQFDISTKHDLQMIICDVLGVDKAYLYINSDKQLDKNTLKKIDEKILRLLAGEPLAY 74

Query: 161 CLD-RDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL--LELY 217
            L  + + +++L V   TLI R                ++  VL   +     L  L+L 
Sbjct: 75  ILGYKYFWNQKLYVTKDTLIPR-----------ADTETVVATVLDDIQNKDAQLKILDLG 123

Query: 218 CGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRR 275
            G G  +L +A      +V+AV++ + S++ A+ N  AN++ NVK ++ S          
Sbjct: 124 TGTGAIALAIAAELANSQVVAVDLYQQSLDVAKKNAQANNITNVKFIQSS---------- 173

Query: 276 EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                     ++ + +F  I  +PP   L D  +  
Sbjct: 174 -------WYTNLDTDKFDIIVSNPPYIDLADTNIDQ 202


>gi|152981849|ref|YP_001353643.1| hypothetical protein mma_1953 [Janthinobacterium sp. Marseille]
 gi|151281926|gb|ABR90336.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 310

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN-HVNNVK 260
            +         +LEL  G G  S   A   ++V  VE     V  A+  +A N +   V+
Sbjct: 37  AITHLVAPGAKVLELGGGTGVLSWFAAARAEKVWCVEYNPDLVAEAKRFLAQNVNGERVE 96

Query: 261 IVRMSSKEFTQ 271
           +++  + E+  
Sbjct: 97  VIQGDAFEYLP 107


>gi|126725880|ref|ZP_01741722.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales
           bacterium HTCC2150]
 gi|126705084|gb|EBA04175.1| Protein-L-isoaspartate carboxylmethyltransferase [Rhodobacterales
           bacterium HTCC2150]
          Length = 268

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            ML+ +      +   +L++ CG G  S +LAR  D V+AVE        A+  ++    
Sbjct: 120 KMLDALDVQPDDV---VLDIGCGLGYSSALLARMSDAVVAVEDNAELAAEAQRLLSEVGA 176

Query: 257 NNVKIVRMSSKE 268
           +N  +      E
Sbjct: 177 DNAAVFEGDLAE 188


>gi|159469135|ref|XP_001692723.1| predicted protein [Chlamydomonas reinhardtii]
 gi|33943786|gb|AAQ55554.1| MPBQ/MSBQ transferase cyanobacterial type [Chlamydomonas
           reinhardtii]
 gi|158277976|gb|EDP03742.1| predicted protein [Chlamydomonas reinhardtii]
 gi|170716950|gb|ACB32177.1| cyanobacterial-type MPBQ/MSBQ methyltransferase [Chlamydomonas
           reinhardtii]
          Length = 425

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225
           Y DE L        ++Q +  F          ML +  A        +L++ CG G  S 
Sbjct: 149 YSDEELARGYLKKDFKQAKFDFV-------DEMLRFSGAKNPA---TILDVGCGFGGTSR 198

Query: 226 VLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
            LA+ F    V  + ++   V+          V NVK   M +
Sbjct: 199 HLAKKFRDANVTGITLSPKQVQRGTELAKEQGVGNVKFQVMDA 241


>gi|294814520|ref|ZP_06773163.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
 gi|294327119|gb|EFG08762.1| methyltransferase [Streptomyces clavuligerus ATCC 27064]
          Length = 433

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKEFTQ 271
           + +L  G G  ++ LAR   RVLAV+    +   AR N  A  +  +  VR     E   
Sbjct: 135 VADLCSGIGGDAIALARAGIRVLAVDRDPLTASVARANARALGLTELIEVREADVTEVDT 194

Query: 272 AMRR------EREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
                      R   R +  D  SY     +          A + +    PH
Sbjct: 195 TAYDAVFVDPARRGGRGRIFDPESYSPPLSWAIASARTRPHAALKIAPGVPH 246


>gi|255007832|ref|ZP_05279958.1| hypothetical protein Bfra3_01758 [Bacteroides fragilis 3_1_12]
 gi|313145539|ref|ZP_07807732.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134306|gb|EFR51666.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 392

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 15/120 (12%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L         +L ++C  G FS    R    +V +V+ +  +++    N+  N   + 
Sbjct: 211 RALLERYAKDRSVLNMFCYTGGFSFYAMRGGAKQVHSVDSSAKAIDLTNKNVELNFPGDT 270

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYPHI 318
           +    +   F             K +D    ++  I +DPP      DA    +Q Y  +
Sbjct: 271 RHAAFAEDAF-------------KYLDRMGDQYDLIILDPPAFAKHKDALRNALQGYRKL 317


>gi|171321986|ref|ZP_02910869.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
 gi|171092716|gb|EDT38001.1| DNA methylase N-4/N-6 domain protein [Burkholderia ambifaria MEX-5]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKP--SVEAARYNI 251
            ++E ++ A+    G +L+ + G+G  ++  AR     +  EI +   ++   R N 
Sbjct: 220 EIIERMVLASCPPGGRVLDPFMGSGTTAVACARQGRDFVGYEINESYCAIAHERVNA 276


>gi|71065791|ref|YP_264518.1| HemK family modification methylase [Psychrobacter arcticus 273-4]
 gi|71038776|gb|AAZ19084.1| probable modification methylase, HemK family [Psychrobacter
           arcticus 273-4]
          Length = 305

 Score = 44.2 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 30/136 (22%)

Query: 196 VHMLEWVLAATKGIQG-----DLLELYCGNGNFSLVLARHFD----------RVLAVEIA 240
             +L+W+ +             LL+L  G+G  ++ LA              +V+AV+ +
Sbjct: 108 ETVLDWIKSQPFSTTPTLKSMRLLDLGTGSGCIAISLAHELKLADTLKQVSWQVVAVDFS 167

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             +++ A++N  +N V  V  V  S             ++ L   D     F  I  +PP
Sbjct: 168 LEALKIAQHNAVSNAVE-VTFVHSS------------WYDELPTQDEQL--FDVIVSNPP 212

Query: 301 RSGLDDATVGMVQAYP 316
                D  +  + A P
Sbjct: 213 YIDEADEHLAGLLAEP 228


>gi|329723958|gb|EGG60483.1| methyltransferase small domain protein [Staphylococcus epidermidis
           VCU144]
          Length = 241

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
              +++L  GNG   L+LA    + +  +EI +  V  AR +   N +N+ + +  M  K
Sbjct: 43  NDKVMDLCSGNGVIPLLLAAKSTQPIEGIEIQEQLVSMARRSFKLNDLNDRLTMHHMDLK 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCN 324
           +  Q                   ++  +  +PP   ++       +A+    + I CN
Sbjct: 103 DVYQTF--------------QPAQYTLVTCNPPYFKMNQNHQHQKEAHKIARHEIMCN 146


>gi|325690968|gb|EGD32968.1| rRNA methylase [Streptococcus sanguinis SK115]
 gi|325695068|gb|EGD36971.1| rRNA methylase [Streptococcus sanguinis SK150]
          Length = 183

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +A   +
Sbjct: 6   QMAHAFLAEVVTKEDIVVDATMGNGHDTLFLAKLAKQVYAFDIQEQAVEKTRQGLAEADL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +N +++    +   Q
Sbjct: 66  DNAQLILAGHETLDQ 80


>gi|315645477|ref|ZP_07898601.1| Methyltransferase type 11 [Paenibacillus vortex V453]
 gi|315278955|gb|EFU42265.1| Methyltransferase type 11 [Paenibacillus vortex V453]
          Length = 248

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           LL++  G G   L  A H   ++ ++++   VE AR N+    ++NV+  +M ++  +
Sbjct: 49  LLDIGTGGGESLLSTASHAALLVGIDLSHTMVETARRNMQRTAISNVRFAQMEAESLS 106


>gi|298246976|ref|ZP_06970781.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
 gi|297549635|gb|EFH83501.1| Methyltransferase type 11 [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 185 NSFTQPNAGINVHM---LEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDR------V 234
            +F   N+     +   LE ++       G  +LE+  G G+F+ +LAR          V
Sbjct: 65  FAFY-LNSAFRRRLFGSLEQIVERAGVTPGMRVLEIGPGPGHFTTLLARRVAEQGKQGSV 123

Query: 235 LAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
             VE+    +   R  +    VNNV+IV+  +++ 
Sbjct: 124 TCVELQPEMIARLRQQLHREQVNNVEIVQGDAQQL 158


>gi|159905923|ref|YP_001549585.1| RNA methylase [Methanococcus maripaludis C6]
 gi|159887416|gb|ABX02353.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus maripaludis C6]
          Length = 275

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 10/127 (7%)

Query: 210 QGDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
             +LL++    G  +  LA+   +   +LAVEI K  +++ R NI      N  ++  ++
Sbjct: 88  DDNLLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKNTLMINTNA 147

Query: 267 KEFTQAMRREREF-------NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
               + +R ++         N +KD +    +   +F    +  L    + +++    ++
Sbjct: 148 VNIDKKLRFDKILLDAPCTGNEIKDCNRVKTKRDILFCAKRQVELFRTAIEVLKDGGEMV 207

Query: 320 YISCNPD 326
           Y +C+P+
Sbjct: 208 YSTCSPE 214


>gi|115374327|ref|ZP_01461611.1| ribosomal protein L11 methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368637|gb|EAU67588.1| ribosomal protein L11 methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 247

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 27/167 (16%)

Query: 105 FQIDYLTSQSDQAIVT--------LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
           +  D  T+++ +A+VT        L+  +   D W      L  ++   +  +     A+
Sbjct: 17  YFEDAETAEAARALVTEDFSEARVLLEEKPQQD-WSNEWKALIKSVQVGRLWVGPPWEAD 75

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
                  R  ++ ++                  P   + +  ++  +A+  G    +L++
Sbjct: 76  AAPPDRTRIVIEPKMAFGTGDH-----------PTTSLCLAAIDTYMASHPGAS--VLDV 122

Query: 217 YCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             G G   L +A       RV+  +    SVE A  N A N   +V+
Sbjct: 123 --GTGTGVLAIAAKKLGAGRVVGTDNDPTSVELAHENAAVNDTPDVE 167


>gi|77165697|ref|YP_344222.1| UbiE/COQ5 methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|254434045|ref|ZP_05047553.1| methyltransferase, UbiE/COQ5 family [Nitrosococcus oceani AFC27]
 gi|76884011|gb|ABA58692.1| UbiE/COQ5 methyltransferase [Nitrosococcus oceani ATCC 19707]
 gi|207090378|gb|EDZ67649.1| methyltransferase, UbiE/COQ5 family [Nitrosococcus oceani AFC27]
          Length = 232

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 206 TKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
                  +L+L CG G  +L +A      +V+ VE+ +  ++ AR  +    + N+++V 
Sbjct: 46  MPPNASRILDLACGTGISTLAIASRYPGCQVVGVELREEYLKIARQKVQRLGLKNIELVL 105

Query: 264 MSSKEF 269
             ++++
Sbjct: 106 SRAEDY 111


>gi|29655247|ref|NP_820939.1| peptide release factor-glutamine N5-methyltransferase [Coxiella
           burnetii RSA 493]
 gi|161830961|ref|YP_001596009.1| protein methyltransferase HemK [Coxiella burnetii RSA 331]
 gi|29542519|gb|AAO91453.1| peptide release factor-glutamine N5-methyltransferase [Coxiella
           burnetii RSA 493]
 gi|161762828|gb|ABX78470.1| protein methyltransferase HemK [Coxiella burnetii RSA 331]
          Length = 277

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 77/227 (33%), Gaps = 35/227 (15%)

Query: 104 LFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLD 163
           +  I   T    Q + T+     LD       + L+ +        ++   +++ K    
Sbjct: 1   MLSIKEATKNISQQLTTVSKTPRLDAELLLECV-LKKSRADLFAYPEIQLNSSQQKTL-- 57

Query: 164 RDYVDERLTVAGRTLIYRQIENSFTQPNAGIN----------VHMLEWVLAA-TKGIQGD 212
             YV  RL       I  Q E  F   N  +             ++EW+L    K  +  
Sbjct: 58  SAYVKRRLKGEPIAYILGQKE--FWSLNLKVTPDVLIPRPETEMLVEWILKNLPKDEKLR 115

Query: 213 LLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           + +L  G+G  +L +A  R    + A + ++ +++ A  N   + + N         E+ 
Sbjct: 116 IADLGTGSGAVALAIAVERPHWTIDATDNSQAALKIAEINAKQHEIKNCNFYHG---EWC 172

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           QA+ R                +  I  +PP     D  +  ++  P 
Sbjct: 173 QALPRRD--------------YHAIVGNPPYIPDKDQHLQQLKHEPR 205


>gi|27469214|ref|NP_765851.1| hypothetical protein SE2296 [Staphylococcus epidermidis ATCC 12228]
 gi|57866024|ref|YP_187721.1| hypothetical protein SERP0125 [Staphylococcus epidermidis RP62A]
 gi|293366129|ref|ZP_06612816.1| methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316763|gb|AAO05938.1|AE016751_233 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57636682|gb|AAW53470.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|291319723|gb|EFE60082.1| methyltransferase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329737907|gb|EGG74135.1| methyltransferase small domain protein [Staphylococcus epidermidis
           VCU045]
          Length = 241

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 17/118 (14%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
              +++L  GNG   L+LA    + +  +EI +  V  AR +   N +N+ + +  M  K
Sbjct: 43  NDKVMDLCSGNGVIPLLLAAKSTQPIEGIEIQEQLVSMARRSFKLNDLNDRLTMHHMDLK 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY-ISCN 324
           +  Q                   ++  +  +PP   ++       +A+    + I CN
Sbjct: 103 DVYQTF--------------QPAQYTLVTCNPPYFKMNQNHQHQKEAHKIARHEIMCN 146


>gi|332362266|gb|EGJ40066.1| rRNA methylase [Streptococcus sanguinis SK1056]
          Length = 183

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 36/75 (48%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            M    LA     +  +++   GNG+ +L LA+   +V A +I + +VE  R  +    +
Sbjct: 6   QMAHAFLAEVVTKEDVVVDATMGNGHDTLFLAQLAKQVYAFDIQEQAVEKTRQRLTEAGL 65

Query: 257 NNVKIVRMSSKEFTQ 271
           +NV+++    +   Q
Sbjct: 66  DNVQLILAGHETLDQ 80


>gi|283852359|ref|ZP_06369629.1| Methyltransferase type 12 [Desulfovibrio sp. FW1012B]
 gi|283572207|gb|EFC20197.1| Methyltransferase type 12 [Desulfovibrio sp. FW1012B]
          Length = 557

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +L W+     G  G +LEL  G G  +  LA     V AVE +     AA          
Sbjct: 60  LLSWI---DFGPGGRILELGAGCGALTAHLATLPHAVTAVEGSPE--RAAIIRARCRSAR 114

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           N++IV  ++      +  +R F+    + +  Y    +    P   L       ++    
Sbjct: 115 NLEIVAANA----VGLPYDRSFDVATLVGVLEYAAAFVPGPRPHERLLAEARRYLKDDGC 170

Query: 318 IL 319
           ++
Sbjct: 171 LI 172


>gi|254555737|ref|YP_003062154.1| 16S RNA methylase [Lactobacillus plantarum JDM1]
 gi|254044664|gb|ACT61457.1| 16S RNA methylase [Lactobacillus plantarum JDM1]
          Length = 202

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 20/121 (16%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
               T    G +L+L  G G   + LA       V  V++ + ++  AR N+A N + N 
Sbjct: 52  AFDPTDLPAGPMLDLGTGYGPIGMALAYQSPERTVDMVDVNELALSLARKNVALNQITNT 111

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
            I                         + +  +  I  +PP R+G       +  A   +
Sbjct: 112 NIFTFDV-----------------YQQVTATNYAAIVTNPPVRAGKAVVDAMLTGAVSRL 154

Query: 319 L 319
           +
Sbjct: 155 V 155


>gi|294874831|ref|XP_002767120.1| hypothetical protein Pmar_PMAR020296 [Perkinsus marinus ATCC 50983]
 gi|239868548|gb|EEQ99837.1| hypothetical protein Pmar_PMAR020296 [Perkinsus marinus ATCC 50983]
          Length = 1460

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 11/80 (13%)

Query: 213 LLELYCGNGNFSLVLARHFD----------RVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           +L+L CG G  +L  A+             R++ ++  + +V  AR N   N ++N+   
Sbjct: 881 ILDLGCGTGLLTLTAAKWCMQRGYVSELQPRIIGIDCNEETVALARENAVVNGLSNMLG- 939

Query: 263 RMSSKEFTQAMRREREFNRL 282
             S +  T       E + L
Sbjct: 940 DGSVEFITLDWSNREELDAL 959


>gi|229187554|ref|ZP_04314694.1| Protein hemK [Bacillus cereus BGSC 6E1]
 gi|228595921|gb|EEK53601.1| Protein hemK [Bacillus cereus BGSC 6E1]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LLPFYETGQKLDVVVSNPP 190


>gi|148980399|ref|ZP_01816042.1| putative SAM-dependent methyltransferase [Vibrionales bacterium
           SWAT-3]
 gi|145961271|gb|EDK26583.1| putative SAM-dependent methyltransferase [Vibrionales bacterium
           SWAT-3]
          Length = 397

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   ++   LH  +    ++   N  KI ++       +    +T  Y    +S     
Sbjct: 163 KEGLEQVVGVLHGEEPPKSIVIEENGVKISVN-------IMEGHKTGFYMDQRDS----- 210

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                       +       D+L  +   G F L  L     RV+  ++++ +++ A++N
Sbjct: 211 ---------RKESMKYVKGKDVLNCFSYTGGFGLYALKGDAKRVINADVSQLALDTAKFN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
              N             +          F  L++      +F  + +DPP+ 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKF 305


>gi|153000852|ref|YP_001366533.1| hypothetical protein Shew185_2332 [Shewanella baltica OS185]
 gi|151365470|gb|ABS08470.1| conserved hypothetical protein [Shewanella baltica OS185]
          Length = 335

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 209 IQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266
               +L L+          A     RV+ V+ +  ++   + N A N V+N  + V+  +
Sbjct: 146 QDKTVLNLFSYTCGIGTAAAIGGATRVMNVDFSSFALATGKANAALNQVSNVCEFVQSDA 205

Query: 267 KEFTQAMRRE----REFNRLKDID-IHSYRFKTIFVDPPRSGLDD 306
               + +       R   +L     +   +F  +F+DPPR     
Sbjct: 206 FPALRQLAGLSVGGRRNQKLPSYPKLPQTQFDLVFLDPPRYAKSA 250


>gi|55376444|ref|YP_134296.1| sterol 24-C-methyltransferase [Haloarcula marismortui ATCC 43049]
 gi|55229169|gb|AAV44590.1| sterol 24-C-methyltransferase [Haloarcula marismortui ATCC 43049]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 212 DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            LL++ CG G  +L LA  F   V  V++   +++ A  N    H+++ + +   + +  
Sbjct: 76  RLLDVGCGRGGPALHLAYQFGFNVTGVDLVPYNIQMATENARGKHLDS-EFIIGDATQL- 133

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                       +D          +   P R+ +       ++    +L +S
Sbjct: 134 ---------PFTRDSFTACTAIDALVYLPERNRVFATVADTLEPEG-VLVVS 175


>gi|315647471|ref|ZP_07900577.1| Methyltransferase type 11 [Paenibacillus vortex V453]
 gi|315277139|gb|EFU40475.1| Methyltransferase type 11 [Paenibacillus vortex V453]
          Length = 135

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
            Q    +    +   LA+       LL+  CG G  ++ LA H  +V   +++  S+E A
Sbjct: 33  WQ--GEVLSKFIHSKLASLSKDGASLLDCSCGIGTQAIGLANHGFKVTGTDLSPASIERA 90

Query: 248 RYNIAANHVN 257
                +  V 
Sbjct: 91  TKEAESFGVK 100


>gi|310818989|ref|YP_003951347.1| ribosomal protein L11 methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392061|gb|ADO69520.1| Ribosomal protein L11 methyltransferase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 288

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 60/167 (35%), Gaps = 27/167 (16%)

Query: 105 FQIDYLTSQSDQAIVT--------LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRAN 156
           +  D  T+++ +A+VT        L+  +   D W      L  ++   +  +     A+
Sbjct: 58  YFEDAETAEAARALVTEDFSEARVLLEEKPQQD-WSNEWKALIKSVQVGRLWVGPPWEAD 116

Query: 157 KTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLEL 216
                  R  ++ ++                  P   + +  ++  +A+  G    +L++
Sbjct: 117 AAPPDRTRIVIEPKMAFGTGDH-----------PTTSLCLAAIDTYMASHPGAS--VLDV 163

Query: 217 YCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             G G   L +A       RV+  +    SVE A  N A N   +V+
Sbjct: 164 --GTGTGVLAIAAKKLGAGRVVGTDNDPTSVELAHENAAVNDTPDVE 208


>gi|261252620|ref|ZP_05945193.1| methyltransferase [Vibrio orientalis CIP 102891]
 gi|260936011|gb|EEX92000.1| methyltransferase [Vibrio orientalis CIP 102891]
          Length = 321

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 23/263 (8%)

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQ--------IDYLTSQSDQAIVTLIYHRLLD 128
              +  +     ++   +   P    +LF         ++ LT    Q  + +   + +D
Sbjct: 11  PMQADKLATFFEQLNLQLTEAPNEVRRLFHGRGRRFEGLEQLTCDWIQGQLIVAIFKQVD 70

Query: 129 DAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFT 188
           + + E   +   AL       Q  G++   +         E +     +           
Sbjct: 71  ELFIETLKQGLAALSESDLWQQKQGKSMVVQHRYAEGAPSEVVLGELDSQPVVHESGLKY 130

Query: 189 QPNAGINV---------HMLEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVE 238
           Q N G N          +  +WV         ++L L+     FS+  +A   D+V+ V+
Sbjct: 131 QLNIGRNQNFGLFLDMRYGRDWVKE--NSKHKNVLNLFAYTCGFSVAAIAGGADQVVNVD 188

Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR--LKDIDIHSYRFKTIF 296
           ++K S+   R N   N  +N+  V+    +  ++  + ++  R  L  ID  S++  +  
Sbjct: 189 MSKGSLAKGRENHKLNE-HNINQVKFLGYDIFRSWGKIKKMGRYDLIVIDPPSFQKGSFA 247

Query: 297 VDPPRSGLDDATVGMVQAYPHIL 319
           +      +      ++     ++
Sbjct: 248 LTKDYKRILRKLPELLAEGGEVI 270


>gi|256421027|ref|YP_003121680.1| methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
 gi|256035935|gb|ACU59479.1| Methyltransferase type 11 [Chitinophaga pinensis DSM 2588]
          Length = 252

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +++EW+          +L+L CG G  +  +A    +V  ++ +   + +A+      H 
Sbjct: 21  NLIEWL---QPAAGEQILDLGCGTGELTAQVAESGAKVTGLDSSPAMIASAKE-----HF 72

Query: 257 NNVKIVRMSSKEFT 270
             V      +  F+
Sbjct: 73  PQVTFQVADATSFS 86


>gi|213410092|ref|XP_002175816.1| tRNA wybutosine-synthesizing protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212003863|gb|EEB09523.1| tRNA wybutosine-synthesizing protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 434

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 82/273 (30%), Gaps = 50/273 (18%)

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           ++L + W+   + + D +       +           L  ++ +  L    +    +  +
Sbjct: 166 KILCEEWKTTHLAINDLIPTDDIMRRPCNLRP-----LFGNFGELVLKWPTQ----QDFD 216

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLL-----------------ELYCGNGNFSL-V 226
           N+F   +   N     W    T   +G+++                 +LY G G F+   
Sbjct: 217 NAFW-VHCRQNGIYQCWAPRYTMFSRGNIVEKARLLSQPCIQGEFIADLYVGIGYFAFSY 275

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV------KIVRMSSKEFTQAMRREREF- 279
           +      V   EI   SVE  R     N           + +               EF 
Sbjct: 276 IHAGAKTVFGWEINPWSVEGLRRAAIQNGWTVCIVQHDEEYIHSPGTHQLVVFLESNEFA 335

Query: 280 -NRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH-ILYISCNPDS-----LCRDL 332
            +RL+ +++++       + P           ++   P   +++  N  S     L   L
Sbjct: 336 ESRLRKMNVNARHVNLGLL-PTSKDSWKTAAHILSPTPKSTIHVHENVASNEIVELQNHL 394

Query: 333 -----SILSTTHTIERLALFDQFPYTRHMECGV 360
                  L   H    +    QF  + H+E  V
Sbjct: 395 IETFSQFLELKHLSCSIHPVKQF--SPHVEHVV 425


>gi|169235286|ref|YP_001688486.1| S-adenosylmethionine-dependent methyltransferase [Halobacterium
           salinarum R1]
 gi|167726352|emb|CAP13133.1| homolog to S-adenosylmethionine-dependent methyltransferase
           [Halobacterium salinarum R1]
          Length = 234

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 202 VLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH-VNNV 259
           VL A   + GD +LE+ CG G F+++LA     +  ++I+ P ++  R   A     + +
Sbjct: 36  VLDALGRVDGDRVLEIACGTGRFTVMLAERGADITGLDISGPMLQEGRQKAAQAGVADTI 95

Query: 260 KIVRMSSKEF 269
           + +R  +   
Sbjct: 96  EFMRGDAGRL 105


>gi|160944906|ref|ZP_02092133.1| hypothetical protein FAEPRAM212_02422 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444090|gb|EDP21094.1| hypothetical protein FAEPRAM212_02422 [Faecalibacterium prausnitzii
           M21/2]
          Length = 191

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKE 268
             +L+LY G+G   +  L+R   R + ++ ++ +V     N  A  V +   V    +  
Sbjct: 44  ARVLDLYAGSGQLGIEALSRGAARCVFLDESREAVSIVMRNCKACGVFDRSRVNIGEAAR 103

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           F  A R                +F  + +DPP  G       ++ A    +
Sbjct: 104 FLSACRE---------------QFDLVLLDPPFRG--GTLEKILPAVEKCV 137


>gi|328950855|ref|YP_004368190.1| Conserved hypothetical protein CHP00095 [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451179|gb|AEB12080.1| Conserved hypothetical protein CHP00095 [Marinithermus
           hydrothermalis DSM 14884]
          Length = 184

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 19/106 (17%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
           L+LY G+G   L  A     V+ VE    +V   R N+    +     +   + E     
Sbjct: 48  LDLYAGSGAVGLEAASEGFAVVLVERDAQAVRMLRENLRRAGLR--ARIEGVAVE----- 100

Query: 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                   L +       F   F+ PP        + +++A+  +L
Sbjct: 101 ------RYLLEAQRKGEVFDVAFMAPPYP------IDLLEAFGRLL 134


>gi|301308782|ref|ZP_07214734.1| ribosomal protein L11 methyltransferase [Bacteroides sp. 20_3]
 gi|300833306|gb|EFK63924.1| ribosomal protein L11 methyltransferase [Bacteroides sp. 20_3]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 73/204 (35%), Gaps = 20/204 (9%)

Query: 77  MPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAI 136
                +IN ++   +  I  E    ++   + Y++         L   + LDD   +  +
Sbjct: 13  PIEKEIINDVLAAELGEIGFESFTESEKGLLGYISEA-------LYDKKTLDDKLVDFPL 65

Query: 137 RLRDALHARKYQIQLIGRANKTK-----ICLDRDYVDE-RLTVAGRTLIYRQIEN---SF 187
                 +  K+           K     I +  + +       A     Y  I +   +F
Sbjct: 66  ENTRIDYTSKWVESKDWNEEWEKNYFKPIRIGSECIIRASFHEAEPGYTYNIIIDPKMAF 125

Query: 188 TQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVE 245
              N      M+  +L      + +LL++ CG    ++ LAR     RV A++I + +  
Sbjct: 126 GTGNHETTYLMISEMLKLDLEGK-ELLDMGCGTAVLAI-LARLKGAKRVAAIDIDEWAYN 183

Query: 246 AARYNIAANHVNNVKIVRMSSKEF 269
            A  NI  NH  ++++    +++ 
Sbjct: 184 NALENIRLNHTEDIQVALGGAEKI 207


>gi|262038063|ref|ZP_06011468.1| methyltransferase [Leptotrichia goodfellowii F0264]
 gi|261747883|gb|EEY35317.1| methyltransferase [Leptotrichia goodfellowii F0264]
          Length = 367

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 91/246 (36%), Gaps = 39/246 (15%)

Query: 66  QTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHR 125
           Q  E    + F   S  + +L+ + ++ +    +  AKL   + + S   +    L++ +
Sbjct: 68  QNNEISDKEIFEGNSENLKSLIDKSVSYLEKNNINEAKLIA-EIIFSHVLEIDRMLLFTK 126

Query: 126 LLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN 185
             ++  +E   ++R+ +     +   +       +  ++++   +  V    LI RQ   
Sbjct: 127 YKENLDKEKTDKIRNFIQKVGKEKFPVQY-----LLNEQEFYGRKFYVNTGVLIPRQD-- 179

Query: 186 SFTQPNAGINVHMLEWV---LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIA 240
                       ++E     L + K     +L++  G+G   + LA      +++  +I+
Sbjct: 180 ---------TEVLVEEAIKTLRSEKTETPKILDIGTGSGAIGITLALEIPDSKIMGTDIS 230

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++E +  N +  +  N+K  +    E                 +I   +F  I  +PP
Sbjct: 231 DKALEISEKNKSLLNAENIKFFKSDLFE-----------------NIEYKKFDMIISNPP 273

Query: 301 RSGLDD 306
               D+
Sbjct: 274 YIASDE 279


>gi|254526419|ref|ZP_05138471.1| hypothetical protein P9202_1071 [Prochlorococcus marinus str. MIT
           9202]
 gi|221537843|gb|EEE40296.1| hypothetical protein P9202_1071 [Prochlorococcus marinus str. MIT
           9202]
          Length = 311

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 162 LDRDYVDERLTVAGRTLIYRQIEN---SFTQPNAGINVHMLEWVLAATKGIQGDLLELYC 218
             +D + ERL      L +         F +        +++W           +L++ C
Sbjct: 42  WTQDKLLERLWGEHIHLGFYHSGEKNIDFRKAKVQFVHELVKWSGLDKLPKGSRILDVGC 101

Query: 219 GNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           G G  S +LA+++   V  + I+   V+ AR  +  N + N     M + + 
Sbjct: 102 GIGGSSRILAKNYGFNVTGITISPAQVKRARE-LTPNGL-NCNFQVMDALDL 151


>gi|126736398|ref|ZP_01752140.1| modification methylase, HemK family protein [Roseobacter sp. CCS2]
 gi|126714219|gb|EBA11088.1| modification methylase, HemK family protein [Roseobacter sp. CCS2]
          Length = 288

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 42/192 (21%)

Query: 119 VTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTL 178
           +TLI    ++DA +       DAL AR+ + + +     T+    RD+   +  +  R  
Sbjct: 45  LTLILPEPVNDAVKTRF----DALIARRSRFEPVSHLTGTRAFYGRDFEVTKDVLDPRPE 100

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVE 238
                              ++E  L         +L+L  G+G   + L     + + V 
Sbjct: 101 T----------------ETLIEAALRDPFA---RVLDLGTGSGCILVTLLAENPKAVGVG 141

Query: 239 IAKPSVEA--ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
               +V    A  N   + V++      S  ++  A++R               RF  I 
Sbjct: 142 GDASAVALTVALRNAQRHGVDDRATFVQS--DWMAAIKR---------------RFDLIV 184

Query: 297 VDPPRSGLDDAT 308
            +PP    D+  
Sbjct: 185 ANPPYIAADEMA 196


>gi|56475468|ref|YP_157057.1| SAM-dependent methyltransferase [Aromatoleum aromaticum EbN1]
 gi|56311511|emb|CAI06156.1| predicted SAM-dependent methyltransferase [Aromatoleum aromaticum
           EbN1]
          Length = 208

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 10/103 (9%)

Query: 219 GNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS--SKEFTQAMRRE 276
           G G  S+ LA     V AVEI+  ++E AR   A   +  V+ +R    + ++  A   E
Sbjct: 47  GEGRNSVWLAEQGLDVTAVEISDVAIEKARRLAAGRGIE-VEFIRADMMASDWPPAKLAE 105

Query: 277 REFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                    D     F        R     A   + +    IL
Sbjct: 106 -------AFDWVVGIFIQFVDAAARERQFAAMKQLARRGGRIL 141


>gi|121606563|ref|YP_983892.1| type 11 methyltransferase [Polaromonas naphthalenivorans CJ2]
 gi|120595532|gb|ABM38971.1| Methyltransferase type 11 [Polaromonas naphthalenivorans CJ2]
          Length = 287

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARY 249
                ML+   AA       +L++  G G+ +L +AR       VLA +I++  +  A  
Sbjct: 37  AATADMLD---AARITTGMRVLDMAAGTGDQTLDIARRVGPGGHVLATDISEAMLRFAHD 93

Query: 250 NIAANHVNNVKIVRMSSKEF 269
           N     +  V+     +++ 
Sbjct: 94  NAQQAGLRQVETRVSDAEDL 113


>gi|157162942|ref|YP_001460260.1| 16S rRNA m(2)G966-methyltransferase [Escherichia coli HS]
 gi|157068622|gb|ABV07877.1| putative methyltransferase [Escherichia coli HS]
          Length = 198

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       Q   L+ + G+G   L  L+R+      +E+ +   +    N+A
Sbjct: 39  VRETLFNWLAPVIVDAQ--CLDCFAGSGALGLEALSRYAAEATLIEMDRAVSQQLIKNLA 96

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                N ++V  ++  F                      +  +FVDPP R GL + T+ +
Sbjct: 97  TLKAGNARVVNSNAMSFLAQ---------------KGTPYNIVFVDPPFRRGLLEETINL 141

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++Y+
Sbjct: 142 LEDNGWLADEALIYV 156


>gi|330508804|ref|YP_004385232.1| methyltransferase [Methanosaeta concilii GP-6]
 gi|328929612|gb|AEB69414.1| methyltransferase, putative [Methanosaeta concilii GP-6]
          Length = 277

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 15/133 (11%)

Query: 213 LLELYCGNGNFSLVLAR----HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L++  G G F   LA        +V+ V+I    VE AR N       N+   +   + 
Sbjct: 82  VLDMGSGAG-FDCFLASDRVGPSGKVIGVDITSEMVEKARANSRKGGYANIDFRQGDLEN 140

Query: 269 FTQAMRREREFNRLKDIDIHSYR----FKTIFVDPPRSGLDDATVGMVQAYPHIL----- 319
              A            I++   +     +   V  P   L  + V +++  P  +     
Sbjct: 141 MPVADNYVDVVISNCVINLIPNKRMAFREAFRVLKPGGRLAVSDVVLLKELPEFVKSSTE 200

Query: 320 -YISCNPDSLCRD 331
            YI C   ++ +D
Sbjct: 201 AYIGCLAGAIMKD 213


>gi|319902461|ref|YP_004162189.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
 gi|319417492|gb|ADV44603.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
          Length = 610

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 15/118 (12%)

Query: 197 HMLEWVLAATKGIQGD--LLELYCGNGNFSLVLA------------RHFDRVLAVEIAKP 242
           ++LE V+A  K    D   +++ CG G F L LA                 +  V++++ 
Sbjct: 87  YILERVVATQKKTLQDSLAIDISCGCGAFLLSLANYLHIHCGQSYHEALQHLYGVDVSEL 146

Query: 243 SVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           SV+  +  ++   + N + +       +Q    + +F  +  +   +  F  +  +PP
Sbjct: 147 SVKRCKILLSLAALQNGETLADEDFHVSQGNSLDFDFKAMPGV-AENGGFDIVVGNPP 203


>gi|293400827|ref|ZP_06644972.1| RNA methyltransferase, RsmD family [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305853|gb|EFE47097.1| RNA methyltransferase, RsmD family [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 183

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 14/92 (15%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
           G++L+L+ G+GN SL  ++R     +  +I   ++   R NI    +  N +I +M  K+
Sbjct: 43  GEMLDLFGGSGNMSLEAISRGISHSILCDIHGKAIATMRRNIKTLGIQQNCEIWKMDYKK 102

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              A                  +F  +++DPP
Sbjct: 103 ALAAASE------------QGRKFDLVYLDPP 122


>gi|222529062|ref|YP_002572944.1| HemK family modification methylase [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455909|gb|ACM60171.1| modification methylase, HemK family [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 288

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 23/134 (17%)

Query: 195 NVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIA 252
              ++E  +   K  +    L++  G+G  ++ L +  D +V AV+I++ ++E A  N  
Sbjct: 105 TEVLVEVAIEIFKSKKNLYFLDIGTGSGCIAVALCKFLDCKVFAVDISERALEVASKNAK 164

Query: 253 ANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            N V N +  VR +  E                    + R+  I  +PP    D+    +
Sbjct: 165 LNGVENRISFVRSNLFEDIP----------------KNLRYDAIISNPPY-ISDEEIFEL 207

Query: 312 ---VQAYPHILYIS 322
              V   PHI   S
Sbjct: 208 DPRVLKEPHIALFS 221


>gi|160876840|ref|YP_001556156.1| HemK family modification methylase [Shewanella baltica OS195]
 gi|217974699|ref|YP_002359450.1| HemK family modification methylase [Shewanella baltica OS223]
 gi|304410656|ref|ZP_07392274.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shewanella baltica OS183]
 gi|307304753|ref|ZP_07584503.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shewanella baltica BA175]
 gi|160862362|gb|ABX50896.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shewanella baltica OS195]
 gi|217499834|gb|ACK48027.1| modification methylase, HemK family [Shewanella baltica OS223]
 gi|304351140|gb|EFM15540.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shewanella baltica OS183]
 gi|306912155|gb|EFN42579.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shewanella baltica BA175]
 gi|315269043|gb|ADT95896.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Shewanella baltica OS678]
          Length = 282

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              ++E  L         +L+L  G G  +L LA  R   ++ AV+    +V  A  N  
Sbjct: 100 TEILVETALNMPLSTYAKVLDLGTGTGAIALALASERESWQITAVDKVDDAVALAIANRE 159

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              +  V I++                       + S  F  I  +PP
Sbjct: 160 NLKLPQVDILQSD-----------------WFSAVKSRDFDLIVSNPP 190


>gi|73663578|ref|YP_302359.1| methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72496093|dbj|BAE19414.1| putative methyltransferase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 241

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVL-AVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
           + ++++L  GNG   LVL+    +++ AVEI +  V+ AR +I  N +   + + +M  K
Sbjct: 43  RDNIMDLCSGNGVIPLVLSNKGQQMIDAVEIQEQLVDMARRSITYNQLEERIHMYQMDLK 102

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
           E  +  +                ++  +  +PP    +      + A+ 
Sbjct: 103 EAHRYFK--------------PSQYDLVTCNPPYFKTNQQHQHQIDAHK 137


>gi|328784318|ref|XP_001121222.2| PREDICTED: protein arginine N-methyltransferase 8 [Apis mellifera]
          Length = 379

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 20/105 (19%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           +E L    RT+ YR                M              +L++ CG G  S+  
Sbjct: 72  EEMLKDEVRTVTYRNS--------------MY---HNKHLFKGKTVLDIGCGTGILSMFA 114

Query: 228 ARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEFT 270
           A+    RV+ +E +   VE A   + AN ++NV  I++   +E +
Sbjct: 115 AKAGAARVIGIECSNI-VEYAEKIVEANQLSNVITILKGKVEEVS 158


>gi|297158432|gb|ADI08144.1| methyltransferase [Streptomyces bingchenggensis BCW-1]
          Length = 201

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             A T    G +L++ CG G  +  LA     V  V+++   +E    N    H  + + 
Sbjct: 29  AFADTVSGLGPVLDVGCGPGTVTAYLAERGLDVSGVDLSPRMIE----NARRLH-PHCRF 83

Query: 262 VRMSSKEF 269
              S+ + 
Sbjct: 84  SVASATDL 91


>gi|228988554|ref|ZP_04148641.1| Protein hemK [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771171|gb|EEM19650.1| Protein hemK [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N     
Sbjct: 102 VLERIERHFGDEKLHVADIGTGSGAISITLALENKNLHVYTVDIAQESIEVAKENAKTLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L      S +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYETSQKLDVVVSNPP 190


>gi|167568205|ref|ZP_02361079.1| methyltransferase [Burkholderia oklahomensis C6786]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNI 251
              ++E V A   G    +L++ CG G  +L +AR      R + V++++P + AAR   
Sbjct: 38  AELLVEAVRA---GDGRHVLDVGCGAGATTLAVARLLGERGRCVGVDVSEPLIAAARGRA 94

Query: 252 AANHVNNVKIVRMSS 266
                   + VR  +
Sbjct: 95  EREGAP-ARFVRADA 108


>gi|159905834|ref|YP_001549496.1| precorrin-6Y C5,15-methyltransferase subunit CbiT [Methanococcus
           maripaludis C6]
 gi|226694514|sp|A9AA91|CBIT_METM6 RecName: Full=Probable cobalt-precorrin-6Y C(15)-methyltransferase
           [decarboxylating]
 gi|159887327|gb|ABX02264.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Methanococcus maripaludis C6]
          Length = 181

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 11/67 (16%), Positives = 31/67 (46%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++ CG+G  S+ +A+    V +++ ++ +      N+    + N ++    +K+    
Sbjct: 36  VLDIGCGSGGMSVEIAKRSKFVYSIDNSEDAKNTTSINLKKFKIENCEVFLGDAKDLISK 95

Query: 273 MRREREF 279
               + F
Sbjct: 96  FDFNKVF 102


>gi|124359271|gb|ABN05774.1| SAM (and some other nucleotide) binding motif [Medicago truncatula]
          Length = 344

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKEFTQ 271
           + +++ G G  ++  A+   RV A ++   +VE    N   N +   +K+ +M  + F  
Sbjct: 174 VCDVFAGVGPLAISAAKIVKRVFANDLNPHAVEYLERNSVLNKLEKKIKVFKMDGRRFIM 233

Query: 272 AM 273
           AM
Sbjct: 234 AM 235


>gi|154249952|ref|YP_001410777.1| methyltransferase small [Fervidobacterium nodosum Rt17-B1]
 gi|154153888|gb|ABS61120.1| methyltransferase small [Fervidobacterium nodosum Rt17-B1]
          Length = 206

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 20/120 (16%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAAN 254
              E ++   + I G +L++ CG G   + L +      +   ++ K +VE A+ N   N
Sbjct: 51  KATEILINHCENISGKVLDIGCGYGVIGITLKKENPSIELFMSDVNKRAVEFAKINAKDN 110

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
           ++           +  Q    E             Y F  I  +PP     +  + +++ 
Sbjct: 111 NIQ---------ADIRQGNLYE---------PWEGYLFDHIISNPPIVAGKEVWMKLIEG 152


>gi|187925495|ref|YP_001897137.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Burkholderia phytofirmans PsJN]
 gi|187716689|gb|ACD17913.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Burkholderia phytofirmans PsJN]
          Length = 286

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 14/115 (12%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              +++  L+A + + +  +L+L  G G  ++ +A  R   RV A++ +  ++  A  N 
Sbjct: 97  TELLVDTALSALENLVRPRVLDLGTGTGAIAVAIASMRPDARVWALDRSAEALAVATRNA 156

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           A           + ++            +   D    + RF  I  +PP     D
Sbjct: 157 ARL---------LDAQR--PGGAVVLTQSDWYDSLDAALRFDVIVSNPPYIASGD 200


>gi|68250203|ref|YP_249315.1| hypothetical protein NTHI1897 [Haemophilus influenzae 86-028NP]
 gi|68058402|gb|AAX88655.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
          Length = 268

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
           +  N  +L+   A        +L++ CG G F++ LA+    V A++ +   ++      
Sbjct: 45  SAYNQQLLQ---AMNVQTDETVLDIGCGPGTFAVPLAQQGSTVYALDYSNGMLDCLAQFK 101

Query: 252 AANHVNNVKIVR 263
               ++N+    
Sbjct: 102 QKLGLHNLTTFH 113


>gi|84514952|ref|ZP_01002315.1| Mg-protoporphyrin IX methyl transferase [Loktanella vestfoldensis
           SKA53]
 gi|84511111|gb|EAQ07565.1| Mg-protoporphyrin IX methyl transferase [Loktanella vestfoldensis
           SKA53]
          Length = 230

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
             ML  +    +G    +L+  CG G  ++ LA+    V+AV+I+   VE     + A  
Sbjct: 48  ALMLAQLPDDLRG--ARILDAGCGTGAMAVELAQRGADVVAVDISPALVEIGAKRMPAGL 105

Query: 256 VNNVKIVRMSSKEFTQA 272
              +  V     + T  
Sbjct: 106 PGTITWVAGDMLDATTG 122


>gi|326483092|gb|EGE07102.1| hypothetical protein TEQG_06090 [Trichophyton equinum CBS 127.97]
          Length = 234

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 201 WVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           W+         D+     L+  CG G+ +  L  H    + ++I++  VE    NIAA  
Sbjct: 40  WICPQWGDTADDVKPFRMLDYACGAGSMTRALLPHVSEAIGIDISQNMVEEYNKNIAALG 99

Query: 256 VNNVKIVR 263
           +   K+  
Sbjct: 100 LPADKMFA 107


>gi|326387206|ref|ZP_08208816.1| putative methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208387|gb|EGD59194.1| putative methyltransferase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 278

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 17/131 (12%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSLVL--ARHFDRVLAVEIAKPSVEAARYNIA 252
            ++   +L A     G  +L++ CG G  SL L  AR   R+  ++I    V AAR   +
Sbjct: 27  ANLTPRLLDAIAKEPGSHILDIGCGAGELSLALAAARPEARIAGIDIGPDLVAAARERAS 86

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
                 V      +  F                 + S      F DPP   +      + 
Sbjct: 87  G---TAVTFHCGDAGVFVDPAGAPDL--------LVSRHGVMFFADPP--AVFRHFAAIA 133

Query: 313 QAYPHILYISC 323
                +++ SC
Sbjct: 134 APDARLVF-SC 143


>gi|312889803|ref|ZP_07749349.1| PUA domain containing protein [Mucilaginibacter paludis DSM 18603]
 gi|311297729|gb|EFQ74852.1| PUA domain containing protein [Mucilaginibacter paludis DSM 18603]
          Length = 395

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A       +L+ +   G F+L   ++    V +V+ +  ++E  + N+  N       
Sbjct: 213 ILADYANGKTVLDCFSYTGGFTLNCFQNEAKSVTSVDSSALAIETLKSNLELNDFEQPD- 271

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
            R    +  + +R+ RE             F  + +DPP+     + + 
Sbjct: 272 HRAIQSDVNKQLRKFRE---------EGETFDIVVLDPPKYAPSRSALE 311


>gi|297809639|ref|XP_002872703.1| hypothetical protein ARALYDRAFT_490107 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297318540|gb|EFH48962.1| hypothetical protein ARALYDRAFT_490107 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 996

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 16/111 (14%)

Query: 213 LLELYCGNGNFSLV--LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +++L+ G G F L   +      V A E    ++EA R N+ AN V++  I+        
Sbjct: 841 VVDLFAGIGYFVLPFLVRAKARLVYACEWNPHAIEALRRNVEANSVSDRCII-------- 892

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYI 321
                    NR+      + R     + P   G     +  ++    IL++
Sbjct: 893 -----LEGDNRITAPKGVADRVNLGLI-PSSEGSWVTAIQALRPEGGILHV 937


>gi|295104207|emb|CBL01751.1| RNA methyltransferase, RsmD family [Faecalibacterium prausnitzii
           SL3/3]
          Length = 191

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 19/111 (17%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVR-MSSKE 268
             +L+LY G+G   +  L+R   R + ++ ++ +V     N  A  V +   V    +  
Sbjct: 44  ARVLDLYAGSGQLGIEALSRGAARCVFLDESREAVSIVMRNCKACGVFDRSRVNIGEAAR 103

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           F  A R                +F  + +DPP  G       ++ A    +
Sbjct: 104 FLSACRE---------------QFDLVLLDPPFRG--GTLEKILPAVEKCV 137


>gi|300088594|ref|YP_003759116.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528327|gb|ADJ26795.1| dimethyladenosine transferase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 306

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 15/116 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V AA       ++E+  G G  +  LA    +V+AVE+    V A R  +     +NVK+
Sbjct: 65  VRAAGIETADTVVEVGPGPGVMTAALAEKAGQVIAVELDFGMVAALRETVGQR--SNVKV 122

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           +     + + +             ++       +  + P           ++A   
Sbjct: 123 IAGDILDISPS-------------ELTGASPYKVVANLPYYITSPVLRHFLEASHR 165


>gi|282859295|ref|ZP_06268408.1| ribosomal protein L11 methyltransferase [Prevotella bivia
           JCVIHMP010]
 gi|282587920|gb|EFB93112.1| ribosomal protein L11 methyltransferase [Prevotella bivia
           JCVIHMP010]
          Length = 289

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAA 253
              M+   L         +L+  CG G  S+V A+     V++ +I + SV+ A +N A 
Sbjct: 137 TTQMIVGKLFDLDLSDKRVLDCGCGTGILSIVSAKLGAKEVISYDIDEWSVKNAMHNAAI 196

Query: 254 N 254
           N
Sbjct: 197 N 197


>gi|241763795|ref|ZP_04761841.1| modification methylase, HemK family [Acidovorax delafieldii 2AN]
 gi|241366927|gb|EER61332.1| modification methylase, HemK family [Acidovorax delafieldii 2AN]
          Length = 284

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 26/129 (20%)

Query: 195 NVHMLEWVLAATKGIQ-----GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAA 247
              +++W L     +        +++L  G+G  +L L   R    VL V+ +  ++  A
Sbjct: 99  TETLVDWALEVIAPLSDPQHPPRIVDLGTGSGAIALALQHQRPTAEVLGVDASPDALAVA 158

Query: 248 RYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + N                      +    +F +   +      F  I  +PP     D 
Sbjct: 159 QANAQR-------------------LVLPVQFVQSHWLTGVDGVFDAIVSNPPYIPAHDP 199

Query: 308 TVGMVQAYP 316
            +  +   P
Sbjct: 200 HLAALTHEP 208


>gi|254786797|ref|YP_003074226.1| protein-L-isoaspartate O-methyltransferase [Teredinibacter turnerae
           T7901]
 gi|237684040|gb|ACR11304.1| protein-L-isoaspartate O-methyltransferase [Teredinibacter turnerae
           T7901]
          Length = 214

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 10/128 (7%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             I   M E +L A  G    +LE+  G G  + VLA+  +RV +VE  KP    AR  +
Sbjct: 62  PYIVARMTEILLGA-GGTLSRVLEIGTGCGYQTAVLAQLVERVYSVERIKPLQIQARERL 120

Query: 252 AANHVNNVKIVRM-------SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
               ++NV                    +        +            + V P   G 
Sbjct: 121 RRLKLHNVDFRHADGGLGWPDEGAVFDGILSAAAPREIPARLYRQLAPNGVLVIP--VGD 178

Query: 305 DDATVGMV 312
           D   + +V
Sbjct: 179 DQQILTLV 186


>gi|238919312|ref|YP_002932827.1| hypothetical protein NT01EI_1402 [Edwardsiella ictaluri 93-146]
 gi|238868881|gb|ACR68592.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 405

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 16/110 (14%)

Query: 213 LLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEF 269
           +L  +   G F++  L      V +V+ ++ +++ AR N+  N ++      +R    + 
Sbjct: 223 VLNCFSYTGAFAVSTLMGGCAHVTSVDTSQAALDIARQNVELNGLDLARADFLR---DDV 279

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQAYPHI 318
            Q +RR R+             F  I +DPP+   +     G  + Y  I
Sbjct: 280 FQLLRRYRD---------EGTTFDLIVMDPPKFVENKNQLAGACRGYKDI 320


>gi|271966031|ref|YP_003340227.1| type 12 methyltransferase [Streptosporangium roseum DSM 43021]
 gi|270509206|gb|ACZ87484.1| methyltransferase type 12 [Streptosporangium roseum DSM 43021]
          Length = 208

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N  + E V        GD L+L CG+G  +L LA     V A +I+  +VE        +
Sbjct: 26  NARLTEVVARL---PPGDALDLGCGDGGDALWLAGQGWHVTAADISAVAVERLAALARTH 82

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
            + +           T      R      + D+    +     D  R+ +  +    ++ 
Sbjct: 83  GLGD---------RVTAVRHDLRRSFPHGEFDLICAHYLHTPFDLDRAAVLRSAAHALRQ 133

Query: 315 YPHILYI 321
              +L +
Sbjct: 134 NGRLLIV 140


>gi|229076543|ref|ZP_04209503.1| Protein hemK [Bacillus cereus Rock4-18]
 gi|228706576|gb|EEL58789.1| Protein hemK [Bacillus cereus Rock4-18]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
           +LE +       +  + ++  G+G  S+ LA       V  V+IA+ S+E A+ N  +  
Sbjct: 102 VLERIERLFGNEKLHVADIGTGSGAISITLALENKNLHVYTVDIARESIEVAKENAKSLG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              V                      L        +   +  +PP
Sbjct: 162 AE-VTFYHGDL---------------LSPFYKIDQKLDVVVSNPP 190


>gi|290892603|ref|ZP_06555596.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290557912|gb|EFD91433.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 201

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 30/113 (26%)

Query: 210 QGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
            G +L++ CG G   L +A+ F   ++   ++   ++E A+ N   N + N  I   S  
Sbjct: 60  TGKILDVGCGYGPMGLTVAKAFPDSQIEMADVNLRALELAKENAEINKITNTHIYESSVY 119

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILY 320
           +                 ++ +  ++ I  +PP           ++A   I++
Sbjct: 120 D-----------------NVTANDYQAIISNPP-----------IRAGKRIVH 144


>gi|307152720|ref|YP_003888104.1| 50S ribosomal protein L11 methyltransferase [Cyanothece sp. PCC
           7822]
 gi|306982948|gb|ADN14829.1| ribosomal protein L11 methyltransferase [Cyanothece sp. PCC 7822]
          Length = 298

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 35/205 (17%)

Query: 79  GSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDA-----WRE 133
            S LI A + ++ A +     L   L Q   L + S    VT    RL+D+      W++
Sbjct: 39  QSSLIRAYIPQIKAQLLDLAALSLWLVQDALLLNLSHP--VTRW--RLIDEEDWASSWKQ 94

Query: 134 CAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIEN-SF---TQ 189
                        Y   L   ++  KI L                  R     +F   T 
Sbjct: 95  HWEPTSIGDRFIIYPAWLTPASDDDKIIL------------------RLDPGMAFGTGTH 136

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAAR 248
           P   + +  LE  L      +  + ++ CG+G  S+  +     +V AV+    +V+AAR
Sbjct: 137 PTTQLCLESLEMRLETDANSR-VIADIGCGSGILSIGAVLLGAPQVYAVDNDPLAVKAAR 195

Query: 249 YNIAANHVN--NVKIVRMSSKEFTQ 271
            N   N ++  N+ I + S +E  +
Sbjct: 196 SNRQLNQIDPANLVINQGSIEELLE 220


>gi|171057645|ref|YP_001789994.1| 3-demethylubiquinone-9 3-methyltransferase [Leptothrix cholodnii
           SP-6]
 gi|254789991|sp|B1Y2L3|UBIG_LEPCP RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|170775090|gb|ACB33229.1| ubiquinone biosynthesis O-methyltransferase [Leptothrix cholodnii
           SP-6]
          Length = 235

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 192 AGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   L W+      + G  +L++ CG G  S  +A+   +VL +++A+ S++ A+ +
Sbjct: 30  HQINPLRLNWIEQTVGKLDGLKVLDVGCGGGILSEAMAQRGAQVLGIDLAERSLKVAQLH 89

Query: 251 IAANHVNNVKI 261
              +    V+ 
Sbjct: 90  ALESGQTRVEY 100


>gi|166711621|ref|ZP_02242828.1| hypothetical protein Xoryp_09205 [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 224

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 17/132 (12%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            +L   +A        +LEL CG G  SLVL R    V+A +    +     YN A N +
Sbjct: 57  QLLAEAMATRAIEGKRILELGCGLGLASLVLRRRGADVVASDYHPLAEVFLAYNAALNAL 116

Query: 257 NNVKIVRMS---------------SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V   R+                + +     R      +L   ++     + +  DP R
Sbjct: 117 ESVPYRRLDWDAGAQNMGQFDMIIASDVLYETRHASMLAKLI-PELAKPSCEIVISDPGR 175

Query: 302 SGLDDATVGMVQ 313
            G  +A   M+ 
Sbjct: 176 -GNANALSRMLA 186


>gi|145345270|ref|XP_001417139.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577366|gb|ABO95432.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 309

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 200 EWVLAATKGIQGD-LLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANH 255
           E V A ++ + GD +L++ CG G  +   A       +V A++ +   +  A+ N A+  
Sbjct: 62  ESVFATSRPVTGDAVLDVACGTGVVARECAALVGESGKVTAIDNSPGMLARAKANPASRG 121

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG--MVQ 313
           +  ++    +     +A  R      L+ +   +   K +     R G     V      
Sbjct: 122 IEYLEFDACAPTLPRRAFDRAYCQQGLQFMADPTAAMKAVLSSLKRGGHFTCAVWAPANS 181

Query: 314 AYPHILY 320
           +   I+Y
Sbjct: 182 SENQIIY 188


>gi|21231860|ref|NP_637777.1| hypothetical protein XCC2423 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66768013|ref|YP_242775.1| hypothetical protein XC_1689 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113580|gb|AAM41701.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573345|gb|AAY48755.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 223

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 16/120 (13%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            +L   +A        +LEL CG G  SLVL R    ++A +    +     YN A N +
Sbjct: 57  QLLAEAMATRPVAGKRILELGCGLGLASLVLRRRGADIVASDHHPLAEVFLAYNAALNAL 116

Query: 257 NNVKIVRMS---------------SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
            +V   R+                + +     R      +L   D+     + +  DP R
Sbjct: 117 ESVPYRRLDWDAGAADMGQFDMIIASDVLYETRHATLLAKLI-PDLAKPACEIVISDPGR 175


>gi|126174545|ref|YP_001050694.1| hypothetical protein Sbal_2332 [Shewanella baltica OS155]
 gi|160875561|ref|YP_001554877.1| hypothetical protein Sbal195_2449 [Shewanella baltica OS195]
 gi|125997750|gb|ABN61825.1| conserved hypothetical protein [Shewanella baltica OS155]
 gi|160861083|gb|ABX49617.1| conserved hypothetical protein [Shewanella baltica OS195]
 gi|315267748|gb|ADT94601.1| hypothetical protein Sbal678_2449 [Shewanella baltica OS678]
          Length = 335

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 209 IQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266
               +L L+          A     RV+ V+ +  ++   + N A N V+N  + V+  +
Sbjct: 146 QDKTVLNLFSYTCGIGTAAAIGGATRVMNVDFSSFALATGKANAALNQVSNVCEFVQSDA 205

Query: 267 KEFTQAMRRE----REFNRLKDID-IHSYRFKTIFVDPPRSGLDD 306
               + +       R   +L     +   +F  +F+DPPR     
Sbjct: 206 FPALRQLAGLSVGGRRNQKLPSYPKLPQTQFDLVFLDPPRYAKSA 250


>gi|315122703|ref|YP_004063192.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496105|gb|ADR52704.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 18/124 (14%)

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
             L  +K  I+ +   +  +IC  RD+ + RL ++  T   R                ++
Sbjct: 63  QRLLLKKAVIRSLNYESIHRICGWRDFYNVRLALSSDTFEPRPE-----------TELLV 111

Query: 200 EWVLAATKGIQG-----DLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIA 252
           + +L+     +G      +L+L  G+G   L L +   F   L V+I+  ++E AR N  
Sbjct: 112 DSILSFFLSQRGKKKDARILDLGMGSGAICLALLKENSFFEGLGVDISSKALEIARKNAV 171

Query: 253 ANHV 256
           AN +
Sbjct: 172 ANGL 175


>gi|301616799|ref|XP_002937838.1| PREDICTED: methyltransferase-like protein 10-like [Xenopus
           (Silurana) tropicalis]
          Length = 220

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAAN 254
             ++ W+ A        +L++  GNG   + LA+     +  ++ +  +VE A+      
Sbjct: 46  ARVIRWLNAHKVPQTASILDIGTGNGMLLVELAKSGYCNLTGIDYSSDAVELAKSICEKE 105

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATV 309
            V+  +  ++   +F +     ++F    D+ +    F  + +DP      R     +  
Sbjct: 106 GVS--QNAQLQVTDFLEDFHPSQQF----DVCLDKGTFDAVSLDPTGATEKREQYVRSLC 159

Query: 310 GMVQAYPHILYISCN 324
             ++A    +  SCN
Sbjct: 160 QALKAQGLFIITSCN 174


>gi|297526093|ref|YP_003668117.1| protein of unknown function Met10 [Staphylothermus hellenicus DSM
           12710]
 gi|297255009|gb|ADI31218.1| protein of unknown function Met10 [Staphylothermus hellenicus DSM
           12710]
          Length = 328

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 98/250 (39%), Gaps = 32/250 (12%)

Query: 45  MRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKL 104
            R E+ + HD + +Y  +  Q + + +R+        ++     E++  +   P  R K 
Sbjct: 26  NR-EYKVSHDKEYVYMPVI-QGSDDEIRV--------VLRDFEYELVDCL---PEKRRKH 72

Query: 105 FQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRA------NKT 158
               Y+ S      V ++   +L++  RE  +     LH     I +  +        K 
Sbjct: 73  RDYGYIPSYDLLGDVVVVRENVLENISREQLVNTILDLHPNIKAIYIKEKTIDEFRLPKL 132

Query: 159 KICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE--WVLAATKGIQGDLLEL 216
           K+    +     + V    L+++ +           N  + E    ++   G    +++L
Sbjct: 133 KLLWGVEVG--SVVVKEYGLLFKIMLGKVY-----YNKRLSEEHRRISIISGENEKIIDL 185

Query: 217 YCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH---VNNVKIVRMSSKEFTQA 272
           + G G F + +A  H   +LA ++   +  +   NI  N    + N+ + R+ ++EFT  
Sbjct: 186 FSGIGGFPIHIASMHKAFILANDLNPYAFVSIIDNILLNKKKLIGNIAVTRIDAREFTNF 245

Query: 273 MRREREFNRL 282
              +  F+RL
Sbjct: 246 PSLKEYFDRL 255


>gi|239907812|ref|YP_002954553.1| hypothetical protein DMR_31760 [Desulfovibrio magneticus RS-1]
 gi|239797678|dbj|BAH76667.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 231

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 198 MLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +  W+ +    + G   L+L CG G  ++  A    RVL V+    +V     N   N +
Sbjct: 73  LAAWLESRPDELAGKRGLDLGCGMGLSAMAGAAAGARVLGVDHEPAAVAHGLRNARENGL 132

Query: 257 NNVKIVRMS 265
                  M 
Sbjct: 133 P-ATFAVMD 140


>gi|229000114|ref|ZP_04159684.1| Protein hemK [Bacillus mycoides Rock3-17]
 gi|229007634|ref|ZP_04165228.1| Protein hemK [Bacillus mycoides Rock1-4]
 gi|228753645|gb|EEM03089.1| Protein hemK [Bacillus mycoides Rock1-4]
 gi|228759651|gb|EEM08627.1| Protein hemK [Bacillus mycoides Rock3-17]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 18/105 (17%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANH 255
           +L+ +       +  + ++  G+G  S+ LA      R+  V+IA+ S+E A+ N  A  
Sbjct: 102 VLDRIQRMFGKQELHIADIGTGSGAISITLALENQNLRMYTVDIAQESIEVAKENAKALG 161

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             NV                      L        +   +  +PP
Sbjct: 162 A-NVTFYHGDL---------------LSPFYETGQKLDVVVSNPP 190


>gi|227330267|ref|ZP_03834291.1| tRNA (uracil-5-)-methyltransferase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 34

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 301 RSGLDDATVGMVQAYPHILYISCNPDSLCRDLS 333
           R+G +  TV +VQAYP ILYISCNP++L  +L 
Sbjct: 4   RTGCE--TVKLVQAYPRILYISCNPETLSNNLQ 34


>gi|261855970|ref|YP_003263253.1| ribosomal protein L11 methyltransferase [Halothiobacillus
           neapolitanus c2]
 gi|261836439|gb|ACX96206.1| ribosomal protein L11 methyltransferase [Halothiobacillus
           neapolitanus c2]
          Length = 303

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRV-LAVEIAKPSVEAARYNIAANHVN 257
           L+W+ A +      +L++ CG+G  +L        V    +I   +++A+R N A N + 
Sbjct: 157 LDWLDAQSLNGL-RVLDVGCGSGILALAALMKGASVAYGTDIDPQALKASRDNAALNDIP 215

Query: 258 NVKIVRMSSKEFTQ 271
             +      +E   
Sbjct: 216 EDRFWLGLPEELAA 229


>gi|254382171|ref|ZP_04997532.1| methyltransferase-UbiE [Streptomyces sp. Mg1]
 gi|194341077|gb|EDX22043.1| methyltransferase-UbiE [Streptomyces sp. Mg1]
          Length = 253

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 26/127 (20%)

Query: 213 LLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L++ CG G  +  LA       RV AV+ A+  +  AR + A   V +V+         
Sbjct: 44  VLDVGCGPGTITADLAELVSPGGRVTAVDAAEGVLAQARAHAAERGVTDVEFAVADV--- 100

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS-- 327
                   +F       +H+++      DP R+         ++    +    C P    
Sbjct: 101 -----HALDFPDDSFDVVHAHQVLQHVGDPVRA---------LREMRRV----CRPGGIV 142

Query: 328 LCRDLSI 334
             RD   
Sbjct: 143 AARDADY 149


>gi|148257404|ref|YP_001241989.1| 50S ribosomal protein L11P methyltransferase [Bradyrhizobium sp.
           BTAi1]
 gi|146409577|gb|ABQ38083.1| [LSU ribosomal protein L11P]-lysine N-methyltransferase
           [Bradyrhizobium sp. BTAi1]
          Length = 298

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 25/155 (16%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV 256
           +L+ +L +       +L+L  G G  ++  A+     VLA +I  PSV  AR N   N V
Sbjct: 147 LLDHILKSRVPR--RVLDLGTGTGVLAIAAAKAQHRSVLASDIDPPSVAVARENAWLNGV 204

Query: 257 NN-VKIVRM---SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV 312
              V+++R    ++++F +A   +                  I  +P R         + 
Sbjct: 205 GPLVRVIRATGFAAEDFAKAGPFDLVLAN-------------ILANPLRQLASPMQRHLA 251

Query: 313 QAYPHILYISCNPDSLCRDLSILSTTHTIERLALF 347
           ++   IL  S    +  R +      +    L   
Sbjct: 252 RSADVIL--SGLLTTQARSVI---AAYRARGLVPV 281


>gi|126441078|ref|YP_001058118.1| UbiE/COQ5 family methlytransferase [Burkholderia pseudomallei 668]
 gi|126220571|gb|ABN84077.1| methyltransferase, UbiE/COQ5 family [Burkholderia pseudomallei 668]
          Length = 251

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNNVK 260
                      +L+L CG G+ S   AR     V+A ++A   +   +       ++NV+
Sbjct: 34  AAEIGATPGARVLDLGCGAGHASFAAARGGAHEVIAYDLAPQMLATVQAAARERGLSNVR 93

Query: 261 IVRMSSKEFTQA 272
           I + +++    A
Sbjct: 94  IEQGAAERLPFA 105


>gi|326469422|gb|EGD93431.1| hypothetical protein TESG_00977 [Trichophyton tonsurans CBS 112818]
          Length = 234

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 201 WVLAATKGIQGDL-----LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
           W+         D+     L+  CG G+ +  L  H    + ++I++  VE    NIAA  
Sbjct: 40  WICPQWGDTADDVKPFRMLDYACGAGSMTRALLPHVSEAIGIDISQNMVEEYNKNIAALG 99

Query: 256 VNNVKIVR 263
           +   K+  
Sbjct: 100 LPADKMFA 107


>gi|325922057|ref|ZP_08183855.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Xanthomonas gardneri ATCC 19865]
 gi|325547467|gb|EGD18523.1| methylase involved in ubiquinone/menaquinone biosynthesis
           [Xanthomonas gardneri ATCC 19865]
          Length = 261

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 27/78 (34%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
                   E          G LL+L CG G+ S  LA     V+A +++   +       
Sbjct: 34  HAQGAEFAELRAGLAGHRNGRLLDLGCGAGHVSFQLAPLMAEVVAYDLSADMLNVVAATA 93

Query: 252 AANHVNNVKIVRMSSKEF 269
           A   +  V+  +  ++  
Sbjct: 94  AERGLAQVRTAQGVAERL 111


>gi|319639481|ref|ZP_07994230.1| protein-(glutamine-N5) methyltransferase [Neisseria mucosa C102]
 gi|317399247|gb|EFV79919.1| protein-(glutamine-N5) methyltransferase [Neisseria mucosa C102]
          Length = 270

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 31/141 (21%)

Query: 173 VAGRTLIYRQIENSF----TQPNAGI------NVHMLEWVLAATKGIQGDLLELYCGNGN 222
           + G  + Y   E  F       N  +        H++E VL      QG + +L  G+G 
Sbjct: 56  LKGEPMAYLLGEREFYGRRFAVNPHVLIPRPETEHLVEAVLKR-LPPQGRVWDLGTGSGA 114

Query: 223 FSLVLA--RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
            ++ +A  R    V A +I+  +++ AR N A      V+  + S               
Sbjct: 115 IAVTVALERVDADVRASDISVGALDTARQNAAELGAK-VEFAQGS--------------- 158

Query: 281 RLKDIDIHS-YRFKTIFVDPP 300
              D D  S  R+  I  +PP
Sbjct: 159 -WFDTDRPSEGRYDVIVSNPP 178


>gi|300767176|ref|ZP_07077088.1| methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308180395|ref|YP_003924523.1| methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|300494995|gb|EFK30151.1| methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045886|gb|ADN98429.1| methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 244

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +    L++V        G LLEL CG G   ++LA+   +V  +++++  +  A+ + 
Sbjct: 16  PAMYQQWLDFVRREYPNQDGQLLELACGTGRLGVLLAQAGYQVTGLDLSENMLALAQRHA 75


>gi|262384304|ref|ZP_06077439.1| 50S ribosomal protein L11 methyltransferase [Bacteroides sp.
           2_1_33B]
 gi|262294007|gb|EEY81940.1| 50S ribosomal protein L11 methyltransferase [Bacteroides sp.
           2_1_33B]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAAR 248
           N      M+  +L      + +LL++ CG    ++ LAR     RV A++I + +   A 
Sbjct: 129 NHETTYLMISEMLKLDLEGK-ELLDMGCGTAVLAI-LARLKGAKRVAAIDIDEWAYNNAL 186

Query: 249 YNIAANHVNNVKIVRMSSKEF 269
            NI  NH  ++++    +++ 
Sbjct: 187 ENIRLNHTEDIQVALGGAEKI 207


>gi|323342351|ref|ZP_08082583.1| protein-(glutamine-N5) methyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463463|gb|EFY08657.1| protein-(glutamine-N5) methyltransferase [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 46/109 (42%), Gaps = 19/109 (17%)

Query: 195 NVHMLEWVLAATKGI--QGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNI 251
              ++  +L+          + ++ CG+G   + LA+  + +V A +I++ ++E AR N 
Sbjct: 95  TEELVGHLLSDIDAHFDTPVIADVACGSGAIGIALAKELNLKVYASDISEEALEVARRNA 154

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             N  + ++I++                  L+ +   + +   +  +PP
Sbjct: 155 DYNQAD-MEIMQGDM---------------LEPLIEKNIKLDVLACNPP 187


>gi|294899921|ref|XP_002776810.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239884011|gb|EER08626.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 354

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N GI   ++E   A+       +LE+  G GN ++ L     +V+A+EI        +  
Sbjct: 60  NPGILDKIIE---ASDIKSTDTVLEIGPGTGNLTMRLLELAKKVVALEIDPRMAAEVKKR 116

Query: 251 IAANHVNNVKIVRMSS 266
                  N+K++   +
Sbjct: 117 AQTAGRMNLKVIEGDA 132


>gi|238753930|ref|ZP_04615290.1| Methyltransferase small [Yersinia ruckeri ATCC 29473]
 gi|238707918|gb|EEQ00276.1| Methyltransferase small [Yersinia ruckeri ATCC 29473]
          Length = 259

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 19/110 (17%)

Query: 212 DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
            +L++ CG+G  +L++A+      ++  VE+   +   A  N  A+   + ++I      
Sbjct: 61  RVLDIGCGSGLIALMIAQRSSPQVQIDGVELENDAAAQASENAQASPWRDRIQIYATDVH 120

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           EF +                H +++  I  +PP      A     +    
Sbjct: 121 EFAKT---------------HVHQYDLIVSNPPYFAPAVACRDAARNTAR 155


>gi|238898007|ref|YP_002923687.1| methylation of 50S ribosomal subunit protein L11 [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|259534540|sp|C4K4P6|PRMA_HAMD5 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|229465765|gb|ACQ67539.1| methylation of 50S ribosomal subunit protein L11 [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 305

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           LEW L +       L++  CG+G  ++  L     + + ++I   ++EA+R N   N V
Sbjct: 156 LEW-LDSLDLQNKILIDFGCGSGILAIAALKLGAKQAIGIDIDPQAIEASRDNAQRNGV 213


>gi|254383844|ref|ZP_04999192.1| methyltransferase [Streptomyces sp. Mg1]
 gi|194342737|gb|EDX23703.1| methyltransferase [Streptomyces sp. Mg1]
          Length = 240

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 198 MLEWVLAATKGIQGDL---LELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAA 253
           ML+ V     G +G     L++ CG G    +L R    RV  V+++   +       A 
Sbjct: 42  MLDAVEETLAGREGSFGAGLDVCCGTGAGLGMLRRLCRDRVTGVDVSAGMLAQ----AAL 97

Query: 254 NHVNNVKIVRMSSKEFTQAM 273
            H + V  VR  +     A+
Sbjct: 98  AHPDGVDFVRADALALPPAL 117


>gi|157377249|ref|YP_001475849.1| ribosomal protein L11 methyltransferase [Shewanella sediminis
           HAW-EB3]
 gi|189037705|sp|A8G0U8|PRMA_SHESH RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|157319623|gb|ABV38721.1| ribosomal protein L11 methyltransferase [Shewanella sediminis
           HAW-EB3]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+ +       ++++  CG+G  ++  L     +V  ++I   +++A++ N   N V 
Sbjct: 149 LEWLDSLDFA-DKEVIDFGCGSGILAVAALKLGATKVTGIDIDYQAIDASKANAERNGVE 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|28378245|ref|NP_785137.1| methyltransferase (putative) [Lactobacillus plantarum WCFS1]
 gi|254556453|ref|YP_003062870.1| methyltransferase (putative) [Lactobacillus plantarum JDM1]
 gi|28271080|emb|CAD63985.1| methyltransferase (putative) [Lactobacillus plantarum WCFS1]
 gi|254045380|gb|ACT62173.1| methyltransferase (putative) [Lactobacillus plantarum JDM1]
          Length = 244

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +    L++V        G LLEL CG G   ++LA+   +V  +++++  +  A+ + 
Sbjct: 16  PAMYQQWLDFVRREYPNQDGQLLELACGTGRLGVLLAQAGYQVTGLDLSENMLALAQRHA 75


>gi|328950030|ref|YP_004367365.1| hypothetical protein Marky_0503 [Marinithermus hydrothermalis DSM
           14884]
 gi|328450354|gb|AEB11255.1| hypothetical protein Marky_0503 [Marinithermus hydrothermalis DSM
           14884]
          Length = 384

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 85/283 (30%), Gaps = 44/283 (15%)

Query: 55  GDDLYHIMFDQQTKERMRIDYFMPGSLL----INALMIEMMATIRLEPLLRAKLFQIDYL 110
           G  +    +D Q+   +R+  F  G L     +            L P  R    + D L
Sbjct: 43  GALIGVGYYDPQSPAPLRVYRFDDGPLDHAFFVQRFRRAQARREGLGPYHRLVHAEADGL 102

Query: 111 TS----QSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKY-------QIQLIGRANKTK 159
                 +  + ++  + +R ++         L +    +           +L G   +T 
Sbjct: 103 PGLVVDRFGEVLLLQVRNRAMEALRDTWLPALIEVTQPQGVYERSDVEARRLEGLEPRTG 162

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLE-------WVLAATKGIQGD 212
           +     +V   L V    L++         P A                   A       
Sbjct: 163 VLYG--HVPPTLQVEEDGLVFAI-------PLAMAQTKGYYLDQRENRRRFEALVQPGQR 213

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           +L++Y   G F+L  AR     LAV+    ++        A+ +             T  
Sbjct: 214 VLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQTARAHGL-------------TVD 260

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
           +R       L ++     RF  I +DPP      + +  V+ +
Sbjct: 261 LRAGEAHAILHELAERGQRFDHILLDPPTLVKKPSALPRVKRH 303


>gi|323498059|ref|ZP_08103065.1| hypothetical protein VISI1226_14367 [Vibrio sinaloensis DSM 21326]
 gi|323316867|gb|EGA69872.1| hypothetical protein VISI1226_14367 [Vibrio sinaloensis DSM 21326]
          Length = 199

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+       +   L+L+ G+G       +R  + V  +E+   + +  + N+A
Sbjct: 46  VKETLFNWIAQDVP--RAKCLDLFAGSGGLGFESASRQAEMVTMIELNPQAFKQLQSNVA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           A   +N+ +V   +  + +                 +     +F+DPP R GL   T+ +
Sbjct: 104 ALKADNITLVNTDALSYLKQ---------------PASPHHVVFIDPPFRQGLLAETIDL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LETNGWLAPDALVYI 163


>gi|262301101|gb|ACY43143.1| arg methyltransferase [Stenochrus portoricensis]
          Length = 246

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEF 269
           +L++ CG G   +  A+    RV+ +E +   VE A   +  NH++N V IV+   +E 
Sbjct: 26  VLDVGCGTGILCMFAAKAGASRVIGIECSSI-VEHAERIVKENHLDNVVTIVKGKVEEV 83


>gi|294872243|ref|XP_002766218.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
 gi|239866886|gb|EEQ98935.1| dimethyladenosine transferase, putative [Perkinsus marinus ATCC
           50983]
          Length = 354

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           N GI   ++E   A+       +LE+  G GN ++ L     +V+A+EI        +  
Sbjct: 60  NPGILDKIIE---ASDIKSTDTVLEIGPGTGNLTMRLLELAKKVVALEIDPRMAAEVKKR 116

Query: 251 IAANHVNNVKIVRMSS 266
                  N+K++   +
Sbjct: 117 AQTAGRMNLKVIEGDA 132


>gi|254173564|ref|ZP_04880236.1| rRNA (adenine-N6)-methyltransferase, putative [Thermococcus sp.
           AM4]
 gi|214032256|gb|EEB73086.1| rRNA (adenine-N6)-methyltransferase, putative [Thermococcus sp.
           AM4]
          Length = 180

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            +L ++LA     +  + ++  G G  ++ L+  F+RV AVE      E  R NI    +
Sbjct: 24  EILRYLLALKMERKVAV-DIGAGTGYLTVPLSWAFERVYAVEANSKMAELLRENIEGRGI 82

Query: 257 NNVKIV 262
            NV+I+
Sbjct: 83  ANVEII 88


>gi|167572849|ref|ZP_02365723.1| hypothetical protein BoklC_23638 [Burkholderia oklahomensis C6786]
          Length = 248

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 47/151 (31%), Gaps = 29/151 (19%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYN 250
           I   +LE            +L++ CG G  S++ A        V+A++ +  +++AA  N
Sbjct: 5   ITRRLLESARLR---PSMRVLDIGCGTGGVSMLAAEMVGPTGTVVAIDQSDIAIDAATAN 61

Query: 251 IAANHVNNVKIVRMS--------------SKEFTQAMRREREFNRLKDIDIHSYRFKTI- 295
                ++N++                   ++          EF R     +    F    
Sbjct: 62  AERARLHNIRFRACGLDQVEGVHSFDVVIARCVLMHQLHVAEFIRHAARFVKPGGFIAFH 121

Query: 296 --------FVDPPRSGLDDATVGMVQAYPHI 318
                      PP +  D   + ++     +
Sbjct: 122 EPDFLRKPMSMPPINLWDSVAMEILDRCKRM 152


>gi|163781933|ref|ZP_02176933.1| ribosomal protein L11 methyltransferase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883153|gb|EDP76657.1| ribosomal protein L11 methyltransferase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 246

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR--HFDRVLAVEIAKPSVEAARYNIA 252
              M   +L         LL++ CG+G  S+ +A+     RV+ +++++ +V  +  N  
Sbjct: 97  TTKMCIRLLKEVLREGDSLLDVGCGSGILSI-VAKMLGASRVVGIDVSEDAVRESLENAE 155

Query: 253 ANHVNNVKIVRMSSKEFTQAM 273
            N V+ +++ R +  E  +  
Sbjct: 156 LNGVS-IEVYRKTPSELEERF 175


>gi|159039128|ref|YP_001538381.1| methyltransferase type 12 [Salinispora arenicola CNS-205]
 gi|157917963|gb|ABV99390.1| Methyltransferase type 12 [Salinispora arenicola CNS-205]
          Length = 201

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 12/118 (10%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             ++ A       +L+  CG G     LA     V+ V+     VE      A       
Sbjct: 37  ARLVDALVPPSSRILDAGCGTGRVGAALAARGHTVVGVDADPVLVE-----AAGATYPGP 91

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH 317
           + +     E   A   E E       D+       +    P  G +   +  V A+  
Sbjct: 92  RWLVGDLAELDLAAAGEPE-----PFDVAVIAGNVMTFVAP--GTEADVLRRVAAHLR 142


>gi|159896643|ref|YP_001542890.1| type 11 methyltransferase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159889682|gb|ABX02762.1| Methyltransferase type 11 [Herpetosiphon aurantiacus ATCC 23779]
          Length = 274

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN 258
           V+ A   +   +L+L  G G   L+ A+       V  V++    ++ AR N     + N
Sbjct: 66  VVRAALQLGQVVLDLGSGGGLDVLLAAKQVGPSGFVYGVDMTDAMLDLARQNAHKAQIEN 125

Query: 259 VKIVRMSSKEF 269
           V  ++   ++ 
Sbjct: 126 VAFLKGDIEQL 136


>gi|104773786|ref|YP_618766.1| methylase of polypeptide chain release factors [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422867|emb|CAI97529.1| Methylase of polypeptide chain release factors [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 273

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
            ARK   +L    +   I     ++  RL VA   LI R                ++EW 
Sbjct: 47  QARKDMKRLAKGDSPQYILGYAWFLGYRLRVAKGVLIPRFE-----------TEELVEWA 95

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA  +     +L+L  G+GN ++ LA+  +                       + ++   
Sbjct: 96  LAHLQDGD-TVLDLGTGSGNITVALAKEAESK--------------------GIKDLHFY 134

Query: 263 RMSSKEFTQAMRREREFN-------RLKDIDIHSYRFKTIFVDPP 300
               K+    +  E   +       R  ++ +   +F  I  +PP
Sbjct: 135 ASDVKDTPLRISEENFLDYGLDVTTRKANVLLGLGKFDLIISNPP 179


>gi|78050032|ref|YP_366207.1| hypothetical protein XCV4476 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78038462|emb|CAJ26207.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 388

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+    +G    +L+L C  G F++  A      VL V+I +  +  A+ N   N+V  
Sbjct: 208 QWLSEQVEGKS--VLDLCCNTGGFAVYAAARGAAEVLGVDIDEDVIAIAKGNAKLNNVR- 264

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K V+               F  L+D      +F  + +DP
Sbjct: 265 PKFVQAD------------IFPWLRDAANRGEQFDVVILDP 293


>gi|86148747|ref|ZP_01067020.1| putative SAM-dependent methyltransferase [Vibrio sp. MED222]
 gi|218709386|ref|YP_002417007.1| putative SAM-dependent methyltransferase [Vibrio splendidus LGP32]
 gi|85833462|gb|EAQ51647.1| putative SAM-dependent methyltransferase [Vibrio sp. MED222]
 gi|218322405|emb|CAV18558.1| putative SAM-dependent methyltransferase [Vibrio splendidus LGP32]
          Length = 397

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 57/172 (33%), Gaps = 30/172 (17%)

Query: 132 RECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPN 191
           +E   ++   LH  +    ++   N  KI ++       +    +T  Y    +S     
Sbjct: 163 KEGLEQVVGVLHGEEPPKSIVIEENGVKISVN-------IMEGHKTGFYMDQRDS----- 210

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYN 250
                       +       D+L  +   G F L  L     RV+  ++++ +++ A++N
Sbjct: 211 ---------RKESMKYVKGKDVLNCFSYTGGFGLYALKGDAKRVINADVSQLALDTAKFN 261

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
              N             +          F  L++      +F  + +DPP+ 
Sbjct: 262 AELNE--------FDISKKRAVFLNADVFKLLREYRDQGTKFDVVIMDPPKF 305


>gi|332701731|ref|ZP_08421819.1| methyltransferase small [Desulfovibrio africanus str. Walvis Bay]
 gi|332551880|gb|EGJ48924.1| methyltransferase small [Desulfovibrio africanus str. Walvis Bay]
          Length = 320

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSL--VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           +        G LL+L  G G  +L  +L       + +E+   S   A  N A   +   
Sbjct: 28  LACFLPQGPGRLLDLGTGCGPVALGWLLRNSEGSAVGLELNPKSAACAWENAARLGLETR 87

Query: 260 KIVR-MSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             VR    ++  +   +           +    F  +  +PP
Sbjct: 88  LDVREGDVRDVRKGGNKLAASG--GSARLEPESFDLVACNPP 127


>gi|332672134|ref|YP_004455142.1| type 11 methyltransferase [Cellulomonas fimi ATCC 484]
 gi|332341172|gb|AEE47755.1| Methyltransferase type 11 [Cellulomonas fimi ATCC 484]
          Length = 248

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 13/132 (9%)

Query: 212 DLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L+L  G G   L+ A+          V++    ++ AR N       NV   + + ++
Sbjct: 77  RVLDLGSGGGIDVLLSAKRVGPTGFAHGVDMTDEMLDLARANAEKAGATNVAFHKGTIED 136

Query: 269 F------TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMV----QAYPHI 318
                     +      N   D          + V   R G+ D          Q     
Sbjct: 137 LPLDDGSVDVVISNCVVNLSPDKSAVLSEVFRVLVPGGRVGISDVVAEDHLTPEQRAERG 196

Query: 319 LYISCNPDSLCR 330
            Y+ C   +L R
Sbjct: 197 SYVGCIAGALSR 208


>gi|325207478|gb|ADZ02930.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           NZ-05/33]
          Length = 330

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L         +L+  CG+G  ++  L       + V+I + +V A R N A N+V+  
Sbjct: 190 KWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGRDNAAQNNVDAQ 249

Query: 260 KI 261
             
Sbjct: 250 FF 251


>gi|320163804|gb|EFW40703.1| protein arginine methyltransferase 3 [Capsaspora owczarzaki ATCC
           30864]
          Length = 595

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 211 GDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
             +L++ CG G   +  AR    +V+ ++ +   ++ A  N+  N +++ + ++R   ++
Sbjct: 332 KTVLDVGCGTGILCMFAARAGATKVIGIDRSNI-IDQALLNVKENGLDHIITLIRGKVED 390

Query: 269 FT 270
            T
Sbjct: 391 VT 392


>gi|313669084|ref|YP_004049368.1| ribosomal protein L11 methyltransferase [Neisseria lactamica
           ST-640]
 gi|313006546|emb|CBN88010.1| putative ribosomal protein L11 methyltransferase [Neisseria
           lactamica 020-06]
          Length = 295

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L         +L+  CG+G  ++  L       + V+I + +V A R N A N+V+  
Sbjct: 155 KWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGRDNAAQNNVDAQ 214

Query: 260 KI 261
             
Sbjct: 215 FF 216


>gi|304388400|ref|ZP_07370509.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           ATCC 13091]
 gi|304337612|gb|EFM03772.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           ATCC 13091]
          Length = 295

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L         +L+  CG+G  ++  L       + V+I + +V A R N A N+V+  
Sbjct: 155 KWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGRDNAAQNNVDAQ 214

Query: 260 KI 261
             
Sbjct: 215 FF 216


>gi|294339324|emb|CAZ87680.1| putative SAM-dependent methyltransferase [Thiomonas sp. 3As]
          Length = 215

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L   +R    VL +E     V A            V++    +    
Sbjct: 68  RVLDLYAGSGALGLEAASRGAASVLLIEQHPRCVAAIAAAAQRLGATQVQVRGADALSCA 127

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQ---AYPHILYISCNPD 326
            ++ R  E            RF  +F+DPP       A +  VQ   A   ++Y+  +  
Sbjct: 128 HSLARAGE------------RFDIVFIDPPYVSAQQLAALQAVQPLVASQGLVYVETDTA 175

Query: 327 SL 328
            L
Sbjct: 176 EL 177


>gi|288561023|ref|YP_003424509.1| Met-10+ like-protein [Methanobrevibacter ruminantium M1]
 gi|288543733|gb|ADC47617.1| Met-10+ like-protein [Methanobrevibacter ruminantium M1]
          Length = 365

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 212 DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHV---NNVKIVRMSSK 267
           ++L+++ G G F +V+AR     + AV+I + +++    NI  N +    ++  +   ++
Sbjct: 211 EILDMFAGIGPFPIVIAREKNVDITAVDINEYAIKYLNENIKLNKLQPNAHITAICGDTR 270

Query: 268 EFTQAMRREREFNRL 282
                  + R+F+R+
Sbjct: 271 IVADNELKGRKFDRI 285


>gi|256828710|ref|YP_003157438.1| type 11 methyltransferase [Desulfomicrobium baculatum DSM 4028]
 gi|256577886|gb|ACU89022.1| Methyltransferase type 11 [Desulfomicrobium baculatum DSM 4028]
          Length = 220

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 13/130 (10%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
           N  +L+WV +  +      + + CG G+ +  L      V+A +I+  +++  R      
Sbjct: 47  NPLLLDWVDSHPRQSGRRAIVVGCGLGDDAEALRERGYAVVAFDISPSAIDMCRR----- 101

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT-IFVDPPRSGLDDATVGMVQ 313
                     SS ++  A   +   + L+  D+        I   P R+    A   +V 
Sbjct: 102 ------RYPDSSVDYLVADLFDHPVHWLRGFDLVYECNTIQILSGPNRARALSAIAELVA 155

Query: 314 AYPHILYISC 323
               I+ +SC
Sbjct: 156 PGGEIV-VSC 164


>gi|226349399|ref|YP_002776513.1| hypothetical protein ROP_pROB01-01620 [Rhodococcus opacus B4]
 gi|226245314|dbj|BAH55661.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 86

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 192 AGINVHMLEWVLAATK-GIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARY 249
              +  +L  VLA+ K G +  +L+L  G G  SL  LA    RV AV++++ +    R 
Sbjct: 11  PQADTWLLAQVLASQKLGPRSRVLDLCTGTGALSLGALAAGAGRVTAVDLSRRARLNTRL 70

Query: 250 NIAANHVNNVKIVRMS 265
           N A  H  ++++VR +
Sbjct: 71  NAAM-HRRSIRVVRAA 85


>gi|288575622|ref|ZP_05977331.2| menaquinone biosynthesis methyltransferase [Neisseria mucosa ATCC
           25996]
 gi|288567363|gb|EFC88923.1| menaquinone biosynthesis methyltransferase [Neisseria mucosa ATCC
           25996]
          Length = 239

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
           V          +LE+ CG G FS  LA+     R++A +I    +      +   H++NV
Sbjct: 80  VQRLHLAPHHHILEVGCGAGYFSPTLAQSVPQGRLVAADIQPEMLAYTEKRLRRRHIDNV 139

Query: 260 KIVRMSSKEF 269
                    F
Sbjct: 140 DYYLCDGTHF 149


>gi|149184379|ref|ZP_01862697.1| Cyclopropane-fatty-acyl-phospholipid synthase [Erythrobacter sp.
           SD-21]
 gi|148831699|gb|EDL50132.1| Cyclopropane-fatty-acyl-phospholipid synthase [Erythrobacter sp.
           SD-21]
          Length = 441

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 74/252 (29%), Gaps = 24/252 (9%)

Query: 53  HDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTS 112
           +DG    +   D               +  I            +   L+ +    +    
Sbjct: 34  YDGKTYDYGTGDAGEPPIHICLTNKKAANHIARYPQMGAGEAFMWGWLKVE----EPHDI 89

Query: 113 QSDQAIVTLIYHRLLDDAWRECAI--RLRDALHARKYQIQLIGRANK---TKICLDRDYV 167
           +     VT    +  D A +           L A+   I L G+A K       L R+ +
Sbjct: 90  RDLILFVTEQAGKPGDKALKSKGKLRTAAQRLIAKADSINLRGKARKNAEHTYNLTRE-L 148

Query: 168 DERLTVAGRTLI---YRQIENSFTQPNAGINVHMLEW----VLAATKGIQGDLLELYCGN 220
            ER     R      YR+           +    L+                +L++ CG 
Sbjct: 149 YERFLDEDRQYTMAYYREDP-----ATTSLEKAQLDKKAHLAAKMYIQPGQRILDIGCGW 203

Query: 221 GNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANH-VNNVKIVRMSSKEFTQAMRRERE 278
           G F+L LARH+D  V  V +A   +   +         + VK      ++ T    R   
Sbjct: 204 GGFALYLARHYDVEVHGVALAPDQIAFCKERAEEAGVADRVKFSLTDYRDVTGQFDRISS 263

Query: 279 FNRLKDIDIHSY 290
              L+ +    Y
Sbjct: 264 VGLLEHVGTPHY 275


>gi|75910750|ref|YP_325046.1| methyltransferase [Anabaena variabilis ATCC 29413]
 gi|75704475|gb|ABA24151.1| methyltransferase [Anabaena variabilis ATCC 29413]
          Length = 261

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIA 252
               +  W           +LEL    G  ++ LA+ +  +V+ VE    SV  AR N+ 
Sbjct: 32  ATEQLCRWA---NFQPSETVLELASSFGYSAISLAQRYGVKVVGVEKNPDSVVRARENVR 88

Query: 253 ANHVNN-VKIVRMS 265
              + N ++I+   
Sbjct: 89  VAGLENQIEIIEGD 102


>gi|20091316|ref|NP_617391.1| hypothetical protein MA2485 [Methanosarcina acetivorans C2A]
 gi|19916443|gb|AAM05871.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 301

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 22/159 (13%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
              +L++ CG G ++L+ A    +V A++ +   + A     +   +  ++ +++  +E 
Sbjct: 87  SDRVLDVGCGPGTYALIFAERARQVDALDSSAAMLAAMSREASHRGLAKLRPLQVKWEEL 146

Query: 270 T-------------QAMRREREFNRLKDIDIHSYRFKTIFVDP---PRSGLDDATVGMVQ 313
                          A++      +L+     S    T   +P   P + L  A +G   
Sbjct: 147 VPEGRYDLAFSAMSPAVKDAPTLRKLEACSSRSCCLVTYGENPDYGPINDLWKAVIGKRP 206

Query: 314 AYPHILYISCNPDSLCR--DLSILSTTHTIERL--ALFD 348
           A     Y+   P +L R  D   +     +ER      D
Sbjct: 207 ATNAFHYV--YPYNLLREIDRKPVLEMFELERAKHVPVD 243


>gi|325926285|ref|ZP_08187639.1| SAM-dependent methyltransferase [Xanthomonas perforans 91-118]
 gi|325929205|ref|ZP_08190346.1| SAM-dependent methyltransferase [Xanthomonas perforans 91-118]
 gi|325540445|gb|EGD12046.1| SAM-dependent methyltransferase [Xanthomonas perforans 91-118]
 gi|325543319|gb|EGD14748.1| SAM-dependent methyltransferase [Xanthomonas perforans 91-118]
          Length = 388

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+    +G    +L+L C  G F++  A      VL V+I +  +  A+ N   N+V  
Sbjct: 208 QWLSEQVEGKS--VLDLCCNTGGFAVYAAARGAAEVLGVDIDEDVIAIAKGNAKLNNVR- 264

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K V+               F  L+D      +F  + +DP
Sbjct: 265 PKFVQAD------------IFPWLRDAANRGEQFDVVILDP 293


>gi|332163157|ref|YP_004299734.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318603959|emb|CBY25457.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667387|gb|ADZ44031.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862842|emb|CBX72983.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           W22703]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKY--QIQLIGRANKTKICLD-RDYVDER-L 171
           + I  L YH  L   +     +L D    R++      +    +  IC   RD  D   +
Sbjct: 68  EVIAMLEYHPQLGKGFIHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDPTAV 127

Query: 172 TVAGR-TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LAR 229
            V     L +       T P   + +  L+ +          +++  CG+G  ++  L  
Sbjct: 128 NVMLDPGLAFGTG----THPTTALCLQWLDGL----NLTGKTVIDFGCGSGILAIAALKL 179

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHV 256
              R + ++I   +++A+R N   N V
Sbjct: 180 GAARAIGIDIDPQAIQASRDNAQRNGV 206


>gi|296124162|ref|YP_003631940.1| hypothetical protein Plim_3930 [Planctomyces limnophilus DSM 3776]
 gi|296016502|gb|ADG69741.1| protein of unknown function Met10 [Planctomyces limnophilus DSM
           3776]
          Length = 479

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 12/120 (10%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L         +L L+   G FS+         V +V++A+P++E AR +   N +   
Sbjct: 295 RALIRKLSYNRRVLNLFSYTGGFSIAAGVGGAQHVTSVDVAEPAIEVARQHWELNELPAS 354

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG-LDDATVGMVQAYPHI 318
           +   +++            F+ L +     +R++ + VDPP      ++    + +Y  +
Sbjct: 355 QHEAIAA----------DVFDFLAEAKKAGHRWEVMVVDPPSFAPSQESLTRAIASYERL 404


>gi|251788964|ref|YP_003003685.1| modification methylase, HemK family [Dickeya zeae Ech1591]
 gi|247537585|gb|ACT06206.1| modification methylase, HemK family [Dickeya zeae Ech1591]
          Length = 310

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
            +L+L  G+G  ++  A+ F    V AV+I+  ++     NI  + +  NV  +R     
Sbjct: 135 HILDLCTGSGCIAIACAQAFPEAEVDAVDISADALAVTEQNIQQHGMEYNVTPIRSDLFR 194

Query: 269 FTQAMRREREFNRLKDIDIHS-YRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS 327
              A++ +        +D          +   P  GL   + G ++    IL  +C PD 
Sbjct: 195 DLPAIQYDLIVTNPPYVDEEDMADLPQEYRFEPELGLAAGSDG-LKLVRRIL--ACAPDY 251

Query: 328 LC 329
           L 
Sbjct: 252 LA 253


>gi|256374215|ref|YP_003097875.1| glycosyl transferase family 2 [Actinosynnema mirum DSM 43827]
 gi|255918518|gb|ACU34029.1| glycosyl transferase family 2 [Actinosynnema mirum DSM 43827]
          Length = 1171

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L+  CG+G  +  +      V+ VE      EAAR       + NV+IV   ++E 
Sbjct: 63  RVLDFGCGSGVLTRAMGELGAGVVGVEGTPTRAEAARE--RCRDLPNVRIVDGGAEEI 118


>gi|261380717|ref|ZP_05985290.1| putative methylase [Neisseria subflava NJ9703]
 gi|284796434|gb|EFC51781.1| putative methylase [Neisseria subflava NJ9703]
          Length = 314

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 32/156 (20%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVN--NVKIVRM 264
                 L L+   G+F++  A         V+++   +E A+ N   N ++    KIVR 
Sbjct: 149 AAGKRFLNLFSYTGSFTVYAATGGAVSSETVDLSNTYLEWAKRNFELNGIDLEQHKIVRA 208

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM------------- 311
                         F  L++      +F  I +DPP        + +             
Sbjct: 209 DV------------FQYLQNAADEGKKFDLIVMDPPSFSNSKKMLDILDIQRDHKKLIDG 256

Query: 312 ---VQAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
              + A   ILY S N  S   D   ++  +T++ +
Sbjct: 257 AMSLLASDGILYFSNNLRSFVLD-DSVAEQYTVKDI 291


>gi|289207524|ref|YP_003459590.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thioalkalivibrio sp. K90mix]
 gi|288943155|gb|ADC70854.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thioalkalivibrio sp. K90mix]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 22/117 (18%)

Query: 195 NVHMLEWVLAATKGIQ---GDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARY 249
              ++E  +AA    +     +L+L  G+G   L L   R     +A + +  ++  AR 
Sbjct: 99  TELLVERAIAAIDACERAHPRVLDLGTGSGAIILALKAERPAIEAVATDRSPDALRQARA 158

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
           N  A  ++ V  ++ +                  D    S  F  I  +PP    DD
Sbjct: 159 NADALGLD-VAFLQGT----------------WLDPFKPSDAFDVIVSNPPYIAPDD 198


>gi|160940894|ref|ZP_02088234.1| hypothetical protein CLOBOL_05786 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436138|gb|EDP13905.1| hypothetical protein CLOBOL_05786 [Clostridium bolteae ATCC
           BAA-613]
          Length = 318

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 79/282 (28%), Gaps = 37/282 (13%)

Query: 18  VDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFM 77
           VD +  M     +  ++I  + P+              +     MF       + I   +
Sbjct: 15  VDLISSMFDDIGIEGIEIEDNVPL-------------TEKETKGMF-------IDILPEL 54

Query: 78  PGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIR 137
           P    +  +   +     +   LR     +D L+  +D    T+      D  W     +
Sbjct: 55  PPDEGVARISFYLDDDADVADYLRRVEEGLDELSPFADLGARTITASETEDKDWINNWKQ 114

Query: 138 LRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRT-LIYRQIENSFTQPNAGINV 196
                      I+                  E +    +  L+ +    +          
Sbjct: 115 YFKPFTVDDILIKPTW---------------ETIPEEHKDKLLVQIDPGTAFGTGMHETT 159

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            +    L         +L++  G+G   +  L    + V   ++ + ++ A R N+ AN 
Sbjct: 160 QLCIRQLKKYVNRDTLVLDVGTGSGILGITALKLGAEEVWGTDLDENAINAVRENLEANS 219

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           +   +   +          +E       D+ + +     I +
Sbjct: 220 IPEDRFHVLQGNIIDDVSVKEWAGYGKYDVAVANILADVIIL 261


>gi|134103540|ref|YP_001109201.1| UbiE/COQ5 family methlytransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008357|ref|ZP_06566330.1| UbiE/COQ5 family methlytransferase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133916163|emb|CAM06276.1| methyltransferase, UbiE/COQ5 family [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 267

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 15/93 (16%)

Query: 176 RTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DR 233
           R+  +R  ENS          +++  +         D+L++ CG G  ++ LA       
Sbjct: 16  RSHRWRTAENS--------AAYLIPHLR-----PGQDVLDVGCGPGTITVDLAELVGPGT 62

Query: 234 VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
           VL V+     +  AR    A    NV       
Sbjct: 63  VLGVDNVDEPLRTARAEAEARGTANVAFRTADV 95


>gi|319426460|gb|ADV54534.1| conserved hypothetical protein [Shewanella putrefaciens 200]
          Length = 335

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRM 264
                 +L L+          A     RV+ V+ +  ++   + N A N V+N  + V+ 
Sbjct: 144 HSQDKTVLNLFSYTCGIGTAAAIGGATRVMNVDFSSFALATGKANAALNQVSNVCEFVQS 203

Query: 265 SSKEFTQAMRRE----REFNRLKDID-IHSYRFKTIFVDPPRSGLDD 306
            +    + +       R   +L     +   +F  +F+DPPR     
Sbjct: 204 DAFPALRQLAGLSVGGRRNQKLPSYPKLVQTQFDLVFLDPPRYAKSA 250


>gi|123443996|ref|YP_001007966.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|166223501|sp|A1JRL5|PRMA_YERE8 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|122090957|emb|CAL13839.1| ribosomal protein L11 methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 14/147 (9%)

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKY--QIQLIGRANKTKICLD-RDYVDER-L 171
           + I  L YH  L   +     +L D    R++      +    +  IC   RD  D   +
Sbjct: 68  EVIAMLEYHPQLGKGFIHKIEQLEDKDWEREWMDNFHPMRFGERLWICPSWRDVPDPTAV 127

Query: 172 TVAGR-TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV-LAR 229
            V     L +       T P   +    L+W+       +  +++  CG+G  ++  L  
Sbjct: 128 NVMLDPGLAFGTG----THPTTALC---LQWLDGLNLAGK-TVIDFGCGSGILAIAALKL 179

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHV 256
                + ++I   +++A+R N   N V
Sbjct: 180 GAAHAIGIDIDPQAIQASRDNAQRNGV 206


>gi|58582773|ref|YP_201789.1| hypothetical protein XOO3150 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427367|gb|AAW76404.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 154

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 30/69 (43%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
            +L   +A        +LEL CG G  SLVL R    V+A +    +     YN A N +
Sbjct: 20  QLLAEAMATRAIEGKRILELGCGLGLASLVLRRRGADVVASDYHPLAEVFLAYNAALNAL 79

Query: 257 NNVKIVRMS 265
            +V   R+ 
Sbjct: 80  KSVPYRRLD 88


>gi|52080104|ref|YP_078895.1| adenine-specific DNA methylase [Bacillus licheniformis ATCC 14580]
 gi|52785478|ref|YP_091307.1| YlbH [Bacillus licheniformis ATCC 14580]
 gi|319646121|ref|ZP_08000351.1| YlbH protein [Bacillus sp. BT1B_CT2]
 gi|52003315|gb|AAU23257.1| Adenine-specific DNA methylase [Bacillus licheniformis ATCC 14580]
 gi|52347980|gb|AAU40614.1| YlbH [Bacillus licheniformis ATCC 14580]
 gi|317391871|gb|EFV72668.1| YlbH protein [Bacillus sp. BT1B_CT2]
          Length = 188

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVN-NVKIVRMSSKE 268
           G  L+LY G+G   +  L+R FDR + V+    +++  + N+    +    ++ R  ++ 
Sbjct: 43  GTGLDLYAGSGGLGIEALSRGFDRFIFVDRDFKAIQTVKGNLKTLGLEKCAEVYRNDAER 102

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMV 312
              A+ +                F  +F+DPP R    +A + ++
Sbjct: 103 ALHALVK------------RGASFDAVFLDPPYREQKLEALLSII 135


>gi|21245076|ref|NP_644658.1| oxidoreductase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110809|gb|AAM39194.1| oxidoreductase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 388

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 16/101 (15%)

Query: 200 EWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNN 258
           +W+    +G    +L+L C  G F++  A      VL V+I +  +  A+ N   N+V  
Sbjct: 208 QWLSEQVEGKS--VLDLCCNTGGFAVYAAARGAAEVLGVDIDEDVIAIAKGNAKLNNVR- 264

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
            K V+               F  L+D      +F  + +DP
Sbjct: 265 PKFVQAD------------IFPWLRDAANRGEQFDVVILDP 293


>gi|56476332|ref|YP_157921.1| putative protein-L-isoaspartate o-methyltransferase [Aromatoleum
           aromaticum EbN1]
 gi|56312375|emb|CAI07020.1| putative protein-L-isoaspartate o-methyltransferase [Aromatoleum
           aromaticum EbN1]
          Length = 217

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           + A        +LE+  G+G F+ +LA   D V  ++I    V+ A  N+A   V NV +
Sbjct: 70  LQALQVKRSDTVLEVGAGSGYFAALLAACSDWVRTIDIEPELVKLAAENLARYGVENVIV 129

Query: 262 VRMSSK 267
               + 
Sbjct: 130 EDGDAA 135


>gi|21672455|ref|NP_660522.1| hypothetical protein BUsg166 [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25090515|sp|Q8K9W9|HEMK_BUCAP RecName: Full=Protein methyltransferase hemK homolog
 gi|21623069|gb|AAM67733.1| HemK [Buchnera aphidicola str. Sg (Schizaphis graminum)]
          Length = 275

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 31/149 (20%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCG 219
           I   +++    L V+ +TLI R                ++E +L+        +L+L  G
Sbjct: 71  IIGKKEFWSLSLCVSYKTLIPRPD-----------TEILVEKILSKVNKNFRSILDLGTG 119

Query: 220 NGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           +G  +L LA       ++ V+ +  +++ A+ N    ++ NV+    +            
Sbjct: 120 SGAIALALASVCSHWNIIGVDNSYSALKIAKINGLKLNLKNVEFFYSN------------ 167

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDD 306
                      + +F  I  +PP  G+ +
Sbjct: 168 ------WFSHINEKFHIIVSNPPYIGIKE 190


>gi|86139017|ref|ZP_01057588.1| hypothetical protein MED193_10698 [Roseobacter sp. MED193]
 gi|85824248|gb|EAQ44452.1| hypothetical protein MED193_10698 [Roseobacter sp. MED193]
          Length = 268

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 31/163 (19%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARY 249
           AG++  +L   + A  G    +LEL CG G   L LA       +  VE+       AR 
Sbjct: 41  AGVDPVLLAAAIPARAGE--RVLELGCGGGQAFLCLAERVPGLAITGVELQSDYAVLARR 98

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP--RSGLDDA 307
           N A N   +V++V        +              D+   +F  +  +PP  R+G    
Sbjct: 99  NAAHNG-QSVEVVEADLAALPK--------------DLRQRQFDQVLANPPYYRAGAHSP 143

Query: 308 T------VGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
                  + +    P  ++I    D+  R L+     H I+R 
Sbjct: 144 AEDVGRQIALGGDTPLEIWI----DTAARRLTHKGYLHMIQRA 182


>gi|116619153|ref|YP_821309.1| type 11 methyltransferase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222315|gb|ABJ81024.1| Methyltransferase type 11 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 246

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF---DRVL 235
            +     +F Q         +E    +   I   +L++ CG G  ++  AR      RV+
Sbjct: 19  SFEAPPLAFWQ---RFGERTVERAQLSPGAI---VLDVCCGAGGSAIPAARAVAPSGRVI 72

Query: 236 AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN 280
            V++A   +  AR       V N +       +F Q   R   F+
Sbjct: 73  GVDLAPGLLNLARAKA----VPNAEF---RHADFEQVYFRPATFD 110


>gi|323705576|ref|ZP_08117150.1| Methyltransferase type 11 [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535053|gb|EGB24830.1| Methyltransferase type 11 [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 209

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 212 DLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           ++L+L CG GN  L  A+        + +++ +  +E A  N    ++ N + V    +
Sbjct: 38  NVLDLGCGRGNDVLNAAKIIGERGIAVGLDLTEKMIEEAEKNRKKLNIKNAEFVVGDVE 96


>gi|330905924|ref|XP_003295285.1| hypothetical protein PTT_00269 [Pyrenophora teres f. teres 0-1]
 gi|311333539|gb|EFQ96620.1| hypothetical protein PTT_00269 [Pyrenophora teres f. teres 0-1]
          Length = 305

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 2/125 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +     M + +        GD +L+   G+G  ++ +ARH   V A++I    V  A+ N
Sbjct: 80  SKAQRAMEDKLYTRLGLKPGDRVLDAGAGSGYVAMTMARHGLNVQAIDITPHHVADAKKN 139

Query: 251 IAANHV-NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV 309
           +    + + +K+   +  + +Q      +     +  +H+     +  +  R       V
Sbjct: 140 VVKYGLQDRIKVDYANYHDLSQFPDESFDGIYTMETFVHADDPIKVLNNFKRLLKPGGVV 199

Query: 310 GMVQA 314
            + +A
Sbjct: 200 VLHEA 204


>gi|260767576|ref|ZP_05876512.1| ribosomal RNA small subunit methyltransferase D [Vibrio furnissii
           CIP 102972]
 gi|260617476|gb|EEX42659.1| ribosomal RNA small subunit methyltransferase D [Vibrio furnissii
           CIP 102972]
 gi|315178770|gb|ADT85684.1| hypothetical protein/predicted methyltransferase [Vibrio furnissii
           NCTC 11218]
          Length = 199

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+           L+L+ G+G       +R  ++V  +E+   +    + NIA
Sbjct: 46  VKETLFNWLAQDIP--HAKCLDLFAGSGGLGFEAASRQAEKVTMLEMNPQAFAQLKTNIA 103

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
           A   + ++ +   +               L  ++     +  +F+DPP R GL   TV +
Sbjct: 104 ALKASTIEAINTDT---------------LAYLNQPGQGYDVVFIDPPFRQGLLQQTVQL 148

Query: 312 VQ-----AYPHILYI 321
           ++     A   ++YI
Sbjct: 149 LEQNGWLAPNAMIYI 163


>gi|222837977|gb|EEE76342.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 212 DLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
            +L+  CG G  +L LAR      +VLAV++    +E       A  + N   VR  +  
Sbjct: 2   KVLDAGCGPGRVTLPLARAVGAQGQVLAVDLQPAMLEQVAAKARAQGLEN---VRTQAAA 58

Query: 269 FTQAMRREREFNRLKDIDIHSYRFK 293
             Q      + +R     +      
Sbjct: 59  LGQGQLAAEQHDRAVMAAVLGEIPD 83


>gi|156057873|ref|XP_001594860.1| hypothetical protein SS1G_04668 [Sclerotinia sclerotiorum 1980]
 gi|154702453|gb|EDO02192.1| hypothetical protein SS1G_04668 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 308

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 197 HMLEWVLAATKGIQGD---LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY-NIA 252
            + E VL   +   G    LL+L CG GN +  +A +F+  +  +     +E AR     
Sbjct: 31  KLYETVLEHHEKTGGKFNILLDLGCGPGNATRDMAGYFEEAIGCDAGAAMIETAREIGGK 90

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRL--KDIDIHSYRFKTIFVDPPRS 302
                +++ V  S +EF        E   L    + +H +     +    R+
Sbjct: 91  TRSARDIRWVVGSGEEFAGLGEVRGEEVDLITVAMAVHWFDMDKFWAQAARA 142


>gi|134095752|ref|YP_001100827.1| bifunctional 3-demethylubiquinone-9
           3-methyltransferase/2-octaprenyl-6-hydroxy phenol
           methylase [Herminiimonas arsenicoxydans]
 gi|133739655|emb|CAL62706.1| 3-demethylubiquinone-9 3-methyltransferase
           (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
           (DHHB methyltransferase) [Herminiimonas arsenicoxydans]
          Length = 231

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             IN   LEW+ +        ++++ CG G  S  +AR    V  +++++ +++ A  + 
Sbjct: 29  HEINPLRLEWINSLAPLAAKTVIDIGCGGGILSESMARKGANVTGIDLSEKALKVADLHS 88

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFK 293
             + V  V+   +++++   A R   +F+ +  +++  +   
Sbjct: 89  LESGVQ-VRYELIAAEDM--AAREAGKFDIVTCMEMLEHVPD 127


>gi|147677796|ref|YP_001212011.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum
           SI]
 gi|146273893|dbj|BAF59642.1| SAM-dependent methyltransferases [Pelotomaculum thermopropionicum
           SI]
          Length = 244

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARY 249
           + G   H LE +   T      +L++ CG G  +  LAR F   V A++ ++  +  AR+
Sbjct: 17  HPGGFSHTLETMKRLTISPDDVVLDVGCGTGRTACYLARRFGAHVFALDKSEEMLAKARF 76

Query: 250 NIAANHVNNVKIVRMSS 266
                    V  V   +
Sbjct: 77  RALQEGAE-VHFVHGDA 92


>gi|29893501|gb|AAO93130.1| Mg-protoporphyrin O-methyltransferase [Rubrivivax gelatinosus]
          Length = 233

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AAN 254
             +L W+    +G    +L+  CG G  S+ LAR    V+A++++   V  AR  +  + 
Sbjct: 50  TTLLSWLPQDLRGR--RVLDAGCGTGAASIELARRGAEVVAIDLSPTLVGYARERLPESL 107

Query: 255 HVNNVKIVRMSSKE 268
              ++        +
Sbjct: 108 GPGSIDFRSGDMLD 121


>gi|21228315|ref|NP_634237.1| putative glycosyltransferase [Methanosarcina mazei Go1]
 gi|20906779|gb|AAM31909.1| putative glycosyltransferase [Methanosarcina mazei Go1]
          Length = 1380

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            H+  +  AA       +L+L  G G  S +LA+  + V+ V+I + +V+ A     A +
Sbjct: 25  EHLHRYAFAAQFVSGKKVLDLASGEGYGSYLLAKEANFVVGVDIDENAVKHASQKYQAEN 84

Query: 256 VNNVK 260
           +N VK
Sbjct: 85  LNFVK 89


>gi|7416806|dbj|BAA94055.1| Mg-protoporphyrin IX methyl transferase [Rubrivivax gelatinosus]
          Length = 233

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI-AAN 254
             +L W+    +G    +L+  CG G  S+ LAR    V+A++++   V  AR  +  + 
Sbjct: 50  TTLLSWLPQDLRGR--RVLDAGCGTGAASIELARRGAEVVAIDLSPTLVGYARERLPESL 107

Query: 255 HVNNVKIVRMSSKE 268
              ++        +
Sbjct: 108 GPGSIDFRSGDMLD 121


>gi|329922867|ref|ZP_08278383.1| methyltransferase domain protein [Paenibacillus sp. HGF5]
 gi|328941640|gb|EGG37925.1| methyltransferase domain protein [Paenibacillus sp. HGF5]
          Length = 259

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +  +       +  LL+  CG G  +L LARH   V A +++  SVE A+       +
Sbjct: 38  IRSLYDENPEARFHLLDASCGIGTQALGLARHDFVVTATDLSPKSVERAKKEAEKLGI 95


>gi|328545332|ref|YP_004305441.1| SAM dependent methyltransferase [polymorphum gilvum SL003B-26A1]
 gi|326415074|gb|ADZ72137.1| SAM dependent methyltransferase [Polymorphum gilvum SL003B-26A1]
          Length = 317

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 14/108 (12%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--V 259
              A +     +L L+   G  SL+ A    +V  V+ +K ++  AR N A + ++   V
Sbjct: 138 AAKARRERPVRVLNLFGYTGLASLLPAVAGAQVTHVDASKKAIAYARENQALSGLDELPV 197

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA 307
           + +   + +F     R                +  I +DPP+ G    
Sbjct: 198 RWICEDASKFVAREVR------------RGNTYDGIILDPPKYGRGPK 233


>gi|323477798|gb|ADX83036.1| methyltransferase small [Sulfolobus islandicus HVE10/4]
          Length = 186

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              G + ++ CG G   + LA      +V  V++   +++ A+ N   N V N  I+
Sbjct: 44  AESGIVADVGCGYGPIGIYLALKNPNLKVYMVDVNYIAIKLAKKNAKLNGVENRTII 100


>gi|323497862|ref|ZP_08102873.1| biotin synthesis protein BioC [Vibrio sinaloensis DSM 21326]
 gi|323317090|gb|EGA70090.1| biotin synthesis protein BioC [Vibrio sinaloensis DSM 21326]
          Length = 267

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            +L+L CG G FS VL +   +V  V+++   ++AA+        +N+   +  +++   
Sbjct: 55  TVLDLGCGTGYFSQVLQQRGAKVTCVDLSAEMLQAAKSRC---GTDNMTYQQGDAEQLPF 111

Query: 272 AMRR 275
           A  R
Sbjct: 112 ASGR 115


>gi|229030573|ref|ZP_04186608.1| Methyltransferase type 11 [Bacillus cereus AH1271]
 gi|228730740|gb|EEL81685.1| Methyltransferase type 11 [Bacillus cereus AH1271]
          Length = 261

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 196 VHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH 255
            ++++ V +        LL++  G G+ + +LA  F  V+A+++ +  +E+A+  I +N 
Sbjct: 31  QYVVQQVESRHNY---RLLDIATGGGHVANLLAPFFKEVVALDLTEKMLESAKNFIMSNG 87

Query: 256 VNNVKIVRMSSK 267
             NV  V  +++
Sbjct: 88  HENVSFVAGNAE 99


>gi|229133782|ref|ZP_04262608.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST196]
 gi|228649817|gb|EEL05826.1| Methyltransferase type 11 [Bacillus cereus BDRD-ST196]
          Length = 264

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 33/75 (44%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +   V          LL++  G G+ + +LA  F  V+A+++ +  +E A+  I  N   
Sbjct: 33  LQYVVKQVETRHNTRLLDIATGGGHVANLLAPMFKEVVALDLTEKMLEKAKGFIEGNGHE 92

Query: 258 NVKIVRMSSKEFTQA 272
           NV  V   ++    A
Sbjct: 93  NVSFVAGHAERLPFA 107


>gi|224826792|ref|ZP_03699892.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Lutiella
           nitroferrum 2002]
 gi|224601012|gb|EEG07195.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Lutiella
           nitroferrum 2002]
          Length = 219

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   +++         +  +LE+  G+G+ + +LA     V +V++     E A  N+
Sbjct: 63  PKVEARLVQ---DLGLKPEDKVLEIGTGSGHVTALLASLSRHVYSVDLDPVMKEMAAKNL 119

Query: 252 AANHVNNVKIVRMSSKEFTQAMR 274
               ++N  +V  +  +   A  
Sbjct: 120 KKAGISNATLVEGNGVDGYAAQA 142


>gi|161614770|ref|YP_001588735.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167553007|ref|ZP_02346757.1| SmtA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168466586|ref|ZP_02700448.1| SmtA protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|224582801|ref|YP_002636599.1| metallothionein SmtA [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|161364134|gb|ABX67902.1| hypothetical protein SPAB_02522 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195631066|gb|EDX49652.1| SmtA protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|205322497|gb|EDZ10336.1| SmtA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|224467328|gb|ACN45158.1| SmtA protein [Salmonella enterica subsp. enterica serovar Paratyphi
           C strain RKS4594]
          Length = 267

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VL    G +  +L+   G G  ++ +A    +V   +++   +  AR    A  V  
Sbjct: 34  LDRVLEEIGGRKLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSK 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++  +++    +    + 
Sbjct: 94  DMHFIQCPAQDVASHLESPVDL 115


>gi|227827979|ref|YP_002829759.1| methyltransferase small [Sulfolobus islandicus M.14.25]
 gi|227830702|ref|YP_002832482.1| methyltransferase [Sulfolobus islandicus L.S.2.15]
 gi|229581727|ref|YP_002840126.1| methyltransferase small [Sulfolobus islandicus Y.N.15.51]
 gi|229585246|ref|YP_002843748.1| methyltransferase small [Sulfolobus islandicus M.16.27]
 gi|238620205|ref|YP_002915031.1| methyltransferase small [Sulfolobus islandicus M.16.4]
 gi|284998227|ref|YP_003419994.1| methyltransferase small [Sulfolobus islandicus L.D.8.5]
 gi|227457150|gb|ACP35837.1| methyltransferase small [Sulfolobus islandicus L.S.2.15]
 gi|227459775|gb|ACP38461.1| methyltransferase small [Sulfolobus islandicus M.14.25]
 gi|228012443|gb|ACP48204.1| methyltransferase small [Sulfolobus islandicus Y.N.15.51]
 gi|228020296|gb|ACP55703.1| methyltransferase small [Sulfolobus islandicus M.16.27]
 gi|238381275|gb|ACR42363.1| methyltransferase small [Sulfolobus islandicus M.16.4]
 gi|284446122|gb|ADB87624.1| methyltransferase small [Sulfolobus islandicus L.D.8.5]
          Length = 186

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
              G + ++ CG G   + LA      +V  V++   +++ A+ N   N V N  I+
Sbjct: 44  AESGIVADVGCGYGPIGIYLALKNPNLKVYMVDVNYIAIKLAKKNAKLNGVENRTII 100


>gi|153868970|ref|ZP_01998684.1| hemK protein [Beggiatoa sp. PS]
 gi|152074464|gb|EDN71316.1| hemK protein [Beggiatoa sp. PS]
          Length = 280

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 173 VAGRTLIYRQIENSFT----QP--NAGI----NVHMLEWVLAA-TKGIQGDLLELYCGNG 221
           V G  + Y     +F     Q   N  I       ++E VLA         +++L  G+G
Sbjct: 65  VQGVPIAYLIGSKAFWSFDLQVTKNTLIPRPETELLVEQVLARLPPDSDAQVIDLGTGSG 124

Query: 222 NFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
             +L +A+   + R+LA + A  +++ A+ N      + +K 
Sbjct: 125 AIALAIAKERPYCRLLATDNATEALQVAQANAQHLGFHPIKF 166


>gi|194468251|ref|ZP_03074237.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lactobacillus reuteri 100-23]
 gi|194453104|gb|EDX42002.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lactobacillus reuteri 100-23]
          Length = 288

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 2/108 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIA 252
              +++WVL         +L+L  G+G   + LA  R    V   +I+  ++  A+ N+A
Sbjct: 101 TAELIDWVLQEMPSCPLKVLDLGTGSGVIGITLALERPNWHVSLSDISPAALAVAQENMA 160

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             ++    I     +   Q            D D      + I  + P
Sbjct: 161 KFNLELPLIKSDLFENIDQQYDLIVTNPPYIDPDDTGEIDQAILENEP 208


>gi|85058061|ref|YP_453763.1| 16S rRNA m(2)G966-methyltransferase [Sodalis glossinidius str.
           'morsitans']
 gi|84778581|dbj|BAE73358.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 201

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 24/135 (17%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+    +G     L+ + G+G   L  L+R    V  +E  +        N+ 
Sbjct: 40  VRETLFNWLAPVIQG--ARCLDCFAGSGALGLEALSRAAASVTLLEQDRAVSAQLARNLL 97

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                  +++   S               L+ +      F  +F+DPP R G+  ATV  
Sbjct: 98  VLQAQQAEVITTDS---------------LRWLAQPGAVFDVVFIDPPFRHGMITATVTA 142

Query: 312 VQAYPHI-----LYI 321
           ++ +  +     +YI
Sbjct: 143 LEQHRRLADDSWIYI 157


>gi|28971682|dbj|BAC65280.1| putative methyltransferase [Burkholderia multivorans]
          Length = 207

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L CG G+ S  +A H   V+A ++A P +           + NV+  +  ++  
Sbjct: 45  VLDLGCGAGHASFAVAPHVREVVAYDLAAPMLATVDAAARERRLANVRTQQGPAERL 101


>gi|89101177|ref|ZP_01174009.1| hypothetical protein B14911_01501 [Bacillus sp. NRRL B-14911]
 gi|89084112|gb|EAR63281.1| hypothetical protein B14911_01501 [Bacillus sp. NRRL B-14911]
          Length = 246

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 16/94 (17%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSS 266
            +G+L++L  GNG   L L+      +  VEI +   + A  +I  N + + +K++    
Sbjct: 45  QKGNLIDLCSGNGVIPLFLSSRTKGSITGVEIQERLHDMAVRSIEYNGLEDRIKMIHGDI 104

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           KE    +                 ++  +  +PP
Sbjct: 105 KEMPTLL--------------GHGKYDIVTCNPP 124


>gi|66356728|ref|XP_625542.1| arginine N-methyltransferase [Cryptosporidium parvum Iowa II]
 gi|46226609|gb|EAK87597.1| putative arginine N-methyltransferase [Cryptosporidium parvum Iowa
           II]
          Length = 665

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 213 LLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
           +L++  G G  SL   +   + V+AV+ AK +++ A     AN++ N +  +    ++ +
Sbjct: 347 VLDVGTGTGILSLFAVKSGAKMVVAVDAAKDTIKIAEKIAQANNLGNKIHFICGKFEDLS 406

Query: 271 QAMRREREF----NRLKDIDIHSYRFKTIFV 297
             +   +      N L   D   ++   I  
Sbjct: 407 LFIVENKVISISKNDLPPKDSVPFKCDIIIS 437


>gi|325201498|gb|ADY96952.1| ribosomal protein L11 methyltransferase [Neisseria meningitidis
           M01-240149]
          Length = 295

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
             L         +L+  CG+G  ++  L       + V+I + +V A R N A N+V+  
Sbjct: 155 KWLDTQLKNGESVLDYGCGSGILTIAALKLGAGSAVGVDIDEQAVRAGRDNAAQNNVDAQ 214

Query: 260 KI 261
             
Sbjct: 215 FF 216


>gi|297153720|gb|ADI03432.1| putative NRPS [Streptomyces bingchenggensis BCW-1]
          Length = 1159

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 25/125 (20%)

Query: 198 MLEW----VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           M EW    V    +     LLE+ CG G      A     V AV+++  ++   R  +  
Sbjct: 213 MREWIDGTVHRIHQLRPQRLLEIGCGTGLLLFRYAEACRAVHAVDLSASALADVRQGVER 272

Query: 254 NHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD------PPRSGLDDA 307
              +++ + +  +               L   D+    F T+ ++      P R  L+ A
Sbjct: 273 RGWSHITLAQGDA---------------LSVADLPEAGFDTVVINSVAQYFPNRHYLEQA 317

Query: 308 TVGMV 312
              ++
Sbjct: 318 LTRIL 322


>gi|288817446|ref|YP_003431793.1| ribosomal protein L11 methyltransferase [Hydrogenobacter
           thermophilus TK-6]
 gi|288786845|dbj|BAI68592.1| ribosomal protein L11 methyltransferase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751053|gb|ADO44536.1| Methyltransferase type 11 [Hydrogenobacter thermophilus TK-6]
          Length = 241

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           ++          +++ CG+G  +  L +    +VLA++I + ++E    N + N +   K
Sbjct: 104 LIEEFFKRGWSAIDVGCGSGILAFALKKLSARKVLAIDIDERAIEECEKNASLNRL---K 160

Query: 261 IVRMSSK--------EFTQAMRREREFNRLKDIDIHSYRFKTIFV 297
           I  + +K        +F  A      F R  D     ++   IF 
Sbjct: 161 ITCLKAKPEDIKESFDFLVANLELSIFKREIDHIKPLFKKLAIFS 205


>gi|290961142|ref|YP_003492324.1| SAM-dependent methyltransferase [Streptomyces scabiei 87.22]
 gi|260650668|emb|CBG73784.1| putative SAM-dependent methyltransferase [Streptomyces scabiei
           87.22]
          Length = 256

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            +    L+  + AT     D+L+   G+GNF++ +AR   RV  V+ +  ++ A     A
Sbjct: 18  EVLQDALDRRVKATARESLDVLDTGGGSGNFAVPVARLGHRVTVVDPSPNALFALERRAA 77

Query: 253 ANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                + V+ V+  +      + R          D         +VD P  G+ +A   +
Sbjct: 78  EAGVADRVRGVQGDAHGLFDVVER-------GGYDAVLCHGVLEYVDDPAEGIGNAVAAL 130


>gi|241765725|ref|ZP_04763672.1| ribosomal protein L11 methyltransferase [Acidovorax delafieldii
           2AN]
 gi|241364412|gb|EER59530.1| ribosomal protein L11 methyltransferase [Acidovorax delafieldii
           2AN]
          Length = 300

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVN 257
             A T+   G +L+  CG+G  ++  A+     + AV+I   +VE+   N  AN V 
Sbjct: 163 ASAHTENPLGRVLDYGCGSGILAIAAAKFGAIDIDAVDIDPAAVESTVLNAQANGVQ 219


>gi|213581563|ref|ZP_03363389.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 242

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VL    G +  +L+   G G  ++ +A    +V   +++   +  AR    A  V  
Sbjct: 34  LDRVLEEIGGRKLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSK 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++  +++    +    + 
Sbjct: 94  DMHFIQCPAQDVASHLESPVDL 115


>gi|261408234|ref|YP_003244475.1| type 11 methyltransferase [Paenibacillus sp. Y412MC10]
 gi|261284697|gb|ACX66668.1| Methyltransferase type 11 [Paenibacillus sp. Y412MC10]
          Length = 259

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
           +  +       +  LL+  CG G  +L LARH   V A +++  SVE A+       +
Sbjct: 38  IRSLYDENPEARFHLLDASCGIGTQALGLARHDFVVTATDLSPKSVERAKKEAEKLGI 95


>gi|163757908|ref|ZP_02164997.1| hypothetical protein HPDFL43_20897 [Hoeflea phototrophica DFL-43]
 gi|162285410|gb|EDQ35692.1| hypothetical protein HPDFL43_20897 [Hoeflea phototrophica DFL-43]
          Length = 344

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAA 247
           N   N   ++++L       G  +++ C  G +SL LA       R +A++     +E  
Sbjct: 150 NPTYNAEDIDFLLGGLSD-GGVAVDIGCNIGLYSLPLAAATGPNGRCVAIDANPLMIERL 208

Query: 248 RYNIAANHVNNVKIVRMSSKE 268
           + N + + +NNV  +  +  +
Sbjct: 209 KRNASLSGLNNVTALASAVSD 229


>gi|148717309|dbj|BAF63640.1| hypothetical protein [Crassostrea gigas]
          Length = 342

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIA 252
           N   L   +   KG +  +L++ CG G  S  +A+ +   ++ A+++ + S++ A+  + 
Sbjct: 143 NQRFLVPAMNLKKGDEFMILDIGCGFGKHSREVAKLYPRSKITAIDMDQFSIDNAKKELT 202

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
            + + N++ + M   +  +    + +F  + D+   SY    I     R+   D     
Sbjct: 203 KSGLKNIEYLCMKGGQLPEKWANKFDFVIINDVLHDSYEVDEILKGIKRAIKRDGFAAA 261


>gi|86742287|ref|YP_482687.1| hypothetical protein Francci3_3606 [Frankia sp. CcI3]
 gi|86569149|gb|ABD12958.1| conserved hypothetical protein 95 [Frankia sp. CcI3]
          Length = 185

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 16/135 (11%)

Query: 182 QIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSL-VLARHFDRVLAVEI 239
               + T+P +      L   L+    ++G  + +LY G+G   L  L+R     L V+ 
Sbjct: 16  VPPGTTTRPTSERAREGLFNTLSTCLDLRGARIADLYAGSGAVGLEALSRGATHALLVDR 75

Query: 240 AKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
               +   R N+ A  ++  KI + + +   Q              +     +  +F+DP
Sbjct: 76  DPVVIRTLRRNVTALGLSGAKIAQAAVERVVQ--------------NTSDNPYDVVFLDP 121

Query: 300 PRSGLDDATVGMVQA 314
           P +  D     ++  
Sbjct: 122 PYAMRDSELGEVLSK 136


>gi|53803446|ref|YP_114833.1| protein-L-isoaspartate O-methyltransferase [Methylococcus
           capsulatus str. Bath]
 gi|53757207|gb|AAU91498.1| protein-L-isoaspartate O-methyltransferase [Methylococcus
           capsulatus str. Bath]
          Length = 219

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 16/142 (11%)

Query: 183 IENSFTQP--NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIA 240
           +   F Q          M E +L    G    +LE+  G+G  + VLA+    V +VE  
Sbjct: 60  LPIGFGQTISRPYTVARMTELLLE--DGPLRRVLEVGTGSGYQTAVLAQLVGTVYSVERV 117

Query: 241 KPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN---------RLKDIDIHSYR 291
               E A  ++A  ++ N   VR+   +     R    F+         RL    +    
Sbjct: 118 HALQERAIRSLADLNLRN---VRLKHGDGHLGWRESGPFDGIIVTAAPPRLPAALLDQLN 174

Query: 292 FKTIFVDPPRSGLDDATVGMVQ 313
              + V P   G       +++
Sbjct: 175 PGGVLVAPIGVGRQQTLERIMR 196


>gi|16759860|ref|NP_455477.1| metallothionein SmtA [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16764351|ref|NP_459966.1| metallothionein SmtA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29142367|ref|NP_805709.1| metallothionein SmtA [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|167994942|ref|ZP_02576032.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168233412|ref|ZP_02658470.1| SmtA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168237096|ref|ZP_02662154.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168243760|ref|ZP_02668692.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168263512|ref|ZP_02685485.1| SmtA protein [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168822076|ref|ZP_02834076.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194448499|ref|YP_002044983.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194472660|ref|ZP_03078644.1| SmtA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194737514|ref|YP_002114043.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197264752|ref|ZP_03164826.1| SmtA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198246189|ref|YP_002214915.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390241|ref|ZP_03216852.1| SmtA protein [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204929992|ref|ZP_03221013.1| SmtA protein [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|207856382|ref|YP_002243033.1| metallothionein SmtA [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213027317|ref|ZP_03341764.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213052382|ref|ZP_03345260.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213418992|ref|ZP_03352058.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213424606|ref|ZP_03357389.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213650531|ref|ZP_03380584.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289825848|ref|ZP_06545016.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25512436|pir||AE0615 SmtA protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16419503|gb|AAL19925.1| S-adenosylmethionine-dependent methyltransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16502153|emb|CAD05391.1| SmtA protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29137997|gb|AAO69558.1| SmtA protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|194406803|gb|ACF67022.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194459024|gb|EDX47863.1| SmtA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194713016|gb|ACF92237.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197243007|gb|EDY25627.1| SmtA protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197289817|gb|EDY29178.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940705|gb|ACH78038.1| SmtA protein [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|199602686|gb|EDZ01232.1| SmtA protein [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204320986|gb|EDZ06187.1| SmtA protein [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205327284|gb|EDZ14048.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205332454|gb|EDZ19218.1| SmtA protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205337206|gb|EDZ23970.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205341531|gb|EDZ28295.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205347725|gb|EDZ34356.1| SmtA protein [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|206708185|emb|CAR32478.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261246207|emb|CBG24011.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992730|gb|ACY87615.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157534|emb|CBW17024.1| SmtA protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911977|dbj|BAJ35951.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320085233|emb|CBY95018.1| Protein smtA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223314|gb|EFX48383.1| S-adenosylmethionine-dependent methyltransferase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322616421|gb|EFY13330.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619671|gb|EFY16546.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622633|gb|EFY19478.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629782|gb|EFY26557.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632496|gb|EFY29242.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637009|gb|EFY33712.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641451|gb|EFY38089.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646083|gb|EFY42599.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649615|gb|EFY46046.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654083|gb|EFY50406.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658615|gb|EFY54877.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663472|gb|EFY59674.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670208|gb|EFY66348.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671444|gb|EFY67566.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676800|gb|EFY72867.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682725|gb|EFY78744.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686404|gb|EFY82386.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323129256|gb|ADX16686.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323195927|gb|EFZ81094.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199785|gb|EFZ84874.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202778|gb|EFZ87814.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209049|gb|EFZ93986.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323217990|gb|EGA02705.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323226596|gb|EGA10801.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229792|gb|EGA13915.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233017|gb|EGA17113.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323240752|gb|EGA24794.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243068|gb|EGA27089.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249769|gb|EGA33671.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252758|gb|EGA36596.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323257199|gb|EGA40900.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323259995|gb|EGA43623.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268004|gb|EGA51483.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323269852|gb|EGA53301.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
 gi|326622668|gb|EGE29013.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332987882|gb|AEF06865.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 267

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VL    G +  +L+   G G  ++ +A    +V   +++   +  AR    A  V  
Sbjct: 34  LDRVLEEIGGRKLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSK 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++  +++    +    + 
Sbjct: 94  DMHFIQCPAQDVASHLESPVDL 115


>gi|220932325|ref|YP_002509233.1| Methyltransferase type 11 [Halothermothrix orenii H 168]
 gi|219993635|gb|ACL70238.1| Methyltransferase type 11 [Halothermothrix orenii H 168]
          Length = 276

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
           +  +L   +     +LEL CG GN +L  AR+   V A++ ++  +E AR     + +  
Sbjct: 29  IHQLLEYYQKTPTRVLELACGTGNMALRFARNGYLVTALDKSEAMLEVARNKARKDGI-Y 87

Query: 259 VKIVRMSSKEFT 270
           +  ++   ++F+
Sbjct: 88  IDFIKSDVRDFS 99


>gi|70996801|ref|XP_753155.1| arsenic methyltransferase Cyt19 [Aspergillus fumigatus Af293]
 gi|66850791|gb|EAL91117.1| arsenic methyltransferase Cyt19, putative [Aspergillus fumigatus
           Af293]
 gi|159124762|gb|EDP49880.1| arsenic methyltransferase Cyt19, putative [Aspergillus fumigatus
           A1163]
          Length = 299

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 14/118 (11%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN 258
           V          +++L  G G   L+ AR        + +++ K  ++ A+ N  A  ++N
Sbjct: 59  VAYGNIKQGETIVDLGSGGGIDVLLAARKVGPEGNAIGIDMTKDMIDLAKRNAEAAGLSN 118

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYP 316
            + +  S                L D  +       +    P          + +   
Sbjct: 119 TRFIEASITSI-----------PLPDASVDCIISNCVINLIPSRDKPSVFQEIARLLK 165


>gi|134294602|ref|YP_001118337.1| HemK family modification methylase [Burkholderia vietnamiensis G4]
 gi|134137759|gb|ABO53502.1| [protein release factor]-glutamine N5-methyltransferase
           [Burkholderia vietnamiensis G4]
          Length = 280

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 14/120 (11%)

Query: 195 NVHMLEWVLAATKGI-QGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
              ++E  L A  G     +L+L  G+G  ++ +A  R   RV A++ +  ++E A+ N 
Sbjct: 91  TELLVEAALDAIDGRPHPAVLDLGTGSGAIAVSIAAERPDARVWALDRSPAALEVAQRNA 150

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A   + + +                 +          +  F  I  +PP     D  +  
Sbjct: 151 A--KLLDARRPGGPLHWLQSDWYAALD---------PALAFDAIVSNPPYIAQHDPHLEQ 199


>gi|332288379|ref|YP_004419231.1| 3-demethylubiquinone-9 3-methyltransferase [Gallibacterium anatis
           UMN179]
 gi|330431275|gb|AEC16334.1| 3-demethylubiquinone-9 3-methyltransferase [Gallibacterium anatis
           UMN179]
          Length = 247

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 188 TQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246
            +P   +N   L ++L  + G+ G  +L++ CG G  S  +A+    V  ++++   +  
Sbjct: 33  FKPIHQLNPLRLNYILQHSNGLNGKKVLDVGCGGGILSESMAKSGANVTGIDMSPQPLAV 92

Query: 247 ARYNIAANHVNNVKIVRMSSKEFTQ 271
           A+ +   N++  +   + + ++F Q
Sbjct: 93  AKQHAQDNNLI-IDYQQSTIEDFLQ 116


>gi|330831385|ref|YP_004394337.1| methyltransferase [Aeromonas veronii B565]
 gi|328806521|gb|AEB51720.1| Methyltransferase, putative [Aeromonas veronii B565]
          Length = 209

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 19/121 (15%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
           W+    +G     L+L+ G+G   L  L+R+ ++V  +E+ K + +  + N+ A   +  
Sbjct: 58  WLAPHIRGT--RCLDLFAGSGGLGLEALSRYAEQVTLIEMDKGAADQIKKNLTALGSSQG 115

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI 318
           ++++  +  + Q                 +  F  +F+DPP R  L      +++    +
Sbjct: 116 QVIQSDAVSWLQG---------------PATPFDLVFLDPPFRRELLPQVCELLEQRGWL 160

Query: 319 L 319
            
Sbjct: 161 A 161


>gi|327542971|gb|EGF29420.1| ribosomal RNA small subunit methyltransferase C [Rhodopirellula
           baltica WH47]
          Length = 346

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 38/152 (25%), Gaps = 35/152 (23%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNI 251
               M+             +LEL CGNG  ++  A         AV+    +V+      
Sbjct: 196 AAAAMIRHA---PIPEGSTVLELGCGNGAVAMAAAMRSKTGHAYAVDCNSRAVQCTERAA 252

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           A N + N+  +     E                            ++PP  G        
Sbjct: 253 AQNQIKNLTAIVNHDGELPNV-----------------PPCDIALLNPPYYGDFRIAEHF 295

Query: 312 VQAYPHILYISCNPDSLCRDLSILSTTHTIER 343
           +              +  + L      + I +
Sbjct: 296 M-------------VTAAKKLRSGGEAYVITK 314


>gi|325180235|emb|CCA14638.1| tRNA wybutosinesynthesizing protein putative [Albugo laibachii
           Nc14]
          Length = 854

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 17/158 (10%)

Query: 200 EWVLAATKGIQGDLL-ELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHV 256
           E    A    +G+++ +L+CG G + L    H     V A +    ++ A +YN+  N V
Sbjct: 677 EKARMAGISCKGEIIVDLFCGIGYYVLPFLVHGGASMVHACDWNPDAITALQYNLLRNRV 736

Query: 257 -NNVKIVRMS----SKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG---LDDAT 308
                I        +++      R      L   D        + V     G   + +  
Sbjct: 737 SERCTIHEGDNQVSARKIGPISDRVN-LGLLPKSDKAW--PLAVQVLKSSGGWLHVHENV 793

Query: 309 VGMVQAYPHILYISCNPDSLCR--DLSILSTTHTIERL 344
               +    I ++ C+ ++L +  D + + T H +E++
Sbjct: 794 PKQ-ELKAWIEHVECSIETLAKEIDRNWIVTCHHVEKV 830


>gi|325279118|ref|YP_004251660.1| hypothetical protein Odosp_0388 [Odoribacter splanchnicus DSM
           20712]
 gi|324310927|gb|ADY31480.1| hypothetical protein Odosp_0388 [Odoribacter splanchnicus DSM
           20712]
          Length = 402

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 26/137 (18%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
            + +L  G G  +   A+    V+ VE       AA++N    + +N+ I+   + +  Q
Sbjct: 95  TVCDLTGGLGIDTFYFAQKAGNVIYVERFPEYCTAAQHNFKVLNTSNIHIIHSDACDIIQ 154

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC-R 330
            ++                   T ++DP R G  +  +  +          C PD L  +
Sbjct: 155 TLQA-----------------DTFYLDPARRGNGNKRLFALTD--------CEPDILQLK 189

Query: 331 DLSILSTTHTIERLALF 347
            L +      I +++  
Sbjct: 190 PLLLERARRVIVKISPM 206


>gi|313896539|ref|ZP_07830088.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974724|gb|EFR40190.1| precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT
           subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 191

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 47/167 (28%), Gaps = 34/167 (20%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNN 258
            ++ A       + ++  G G+ S+  AR      V A+E     +     N       N
Sbjct: 26  TLVKARITPDAVVYDVGAGTGSISIEAARMAPQGHVYAIEKNPDGIALIAENAKKFGAEN 85

Query: 259 VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
           + +V  ++ +    +           I     +   I          D     ++    I
Sbjct: 86  ITVVEGTAPDVLADLPALDAAI----IGGSGRKLADIL---------DIIGARLRPQGRI 132

Query: 319 LYISCNPDSLCRDLSILSTTH----------------TIERLALFDQ 349
           +    N  ++    + L   H                 +ER+  +D 
Sbjct: 133 VA---NAITMQTVAACLDYFHAHKDDYSYEAVQVQINRLERVGPYDM 176


>gi|238913236|ref|ZP_04657073.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 267

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VL    G +  +L+   G G  ++ +A    +V   +++   +  AR    A  V  
Sbjct: 34  LDRVLEEIGGRKLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSK 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++  +++    +    + 
Sbjct: 94  DMHFIQCPAQDVASHLESPVDL 115


>gi|238064519|ref|ZP_04609228.1| methyltransferase [Micromonospora sp. ATCC 39149]
 gi|237886330|gb|EEP75158.1| methyltransferase [Micromonospora sp. ATCC 39149]
          Length = 280

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 11/105 (10%)

Query: 218 CGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRRER 277
           CG G  ++ LA  F   + V+     +  AR   A + V NV+ VR  +++    + R R
Sbjct: 51  CGPGTVTVPLAGWFAEAVGVDPDAGMLARARLRAARDGVGNVRWVRARAEDLPAGLGRFR 110

Query: 278 EFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
                  +   S+ +        R  +     GM+      +++S
Sbjct: 111 AV-----VFAQSFHWTV------RDSVAATVRGMLLPGGAFVHVS 144


>gi|237654116|ref|YP_002890430.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase [Thauera
           sp. MZ1T]
 gi|237625363|gb|ACR02053.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Thauera
           sp. MZ1T]
          Length = 217

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 161 CLDRDYVDERLTVAGRTLI---YRQIENSFTQPNAGINVHMLEWVL------AATKGIQG 211
            LD+D +D  +TV     +   +R++  +  +   G    ML+ V+      A       
Sbjct: 20  VLDQDVLDLLMTVKREEFVPAAHRELAFADVEIPIGCGQVMLKPVIEGKILQALRVTKSD 79

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN 258
            +LE+  G+G F+ +LA   + V  +EI    V+ A  N+  N V+N
Sbjct: 80  TVLEIGAGSGWFAALLAARAEWVRTMEIEPELVKLASANLERNGVHN 126


>gi|224369422|ref|YP_002603586.1| PfkB-family carbohydrate kinase [Desulfobacterium autotrophicum
           HRM2]
 gi|223692139|gb|ACN15422.1| PfkB-family carbohydrate kinase [Desulfobacterium autotrophicum
           HRM2]
          Length = 324

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
           ++L++ CG G  +  LA    RV A++ ++  ++  R NI       +K+V M 
Sbjct: 106 EILDIGCGTGLLATALADRGARVTAIDFSRGMLDRCRENIPKALEGRIKLVCMD 159


>gi|260808668|ref|XP_002599129.1| hypothetical protein BRAFLDRAFT_266113 [Branchiostoma floridae]
 gi|229284405|gb|EEN55141.1| hypothetical protein BRAFLDRAFT_266113 [Branchiostoma floridae]
          Length = 317

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANH--VNNVKIVRMSSKEF 269
            +L++ CG G  S+ LA+   +V  ++ ++ +V+AA  ++A +    + +     + ++ 
Sbjct: 129 RILDVGCGGGILSVPLAKLGAQVTGLDASEEAVKAATAHMARDPSLKDTLTFTHGTVEDL 188

Query: 270 TQAMRRER 277
             +  R+ 
Sbjct: 189 VASEVRDY 196


>gi|297196406|ref|ZP_06913804.1| methyltransferase type 11 [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720881|gb|EDY64789.1| methyltransferase type 11 [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 360

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D L++  G G+  +VLA+ F   R   ++ ++  VEA R   A   ++NV+ +   S E 
Sbjct: 182 DALDVGTGQGHAPVVLAKAFPRSRFHGLDQSEAGVEAGRAEAARLGLDNVRFLIGDSAEI 241

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTI 295
           +        F+ + D+         I
Sbjct: 242 SGEYDLITAFDVIHDLAGPDATLAAI 267


>gi|197105766|ref|YP_002131143.1| ribosomal protein L11 methyltransferase [Phenylobacterium zucineum
           HLK1]
 gi|196479186|gb|ACG78714.1| ribosomal protein L11 methyltransferase [Phenylobacterium zucineum
           HLK1]
          Length = 288

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)

Query: 211 GDLLELYCGNGNFSLVLARHFDRV-LAVEIAKPSVEAARYNIAANHVNNVKIVRMS---S 266
             +L++ CG G  ++  AR    + +  +I + SV  A  N   N     + V  S    
Sbjct: 151 PKVLDVGCGTGVLAIAAARTGSELAVGTDIDRVSVRIANENATLNRA-GAEFVHASGLGH 209

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPD 326
                    +  F  +    + +          P  G      G+++     +       
Sbjct: 210 PAVRTRGPYDLVFANILAPPLVALSQDIRNALKP--GGLAILSGLLRTQERRV------- 260

Query: 327 SLCRDLSILSTTHTIER 343
            L    + LS    ++R
Sbjct: 261 -LA---AYLSKGFKLQR 273


>gi|84488917|ref|YP_447149.1| CbiT [Methanosphaera stadtmanae DSM 3091]
 gi|84372236|gb|ABC56506.1| CbiT [Methanosphaera stadtmanae DSM 3091]
          Length = 191

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++++ CG G  +L  A+   ++ ++++   +++  R N+    + N   V +   E  +A
Sbjct: 41  VVDVGCGTGGLTLEFAKRAKKIYSIDMNPDAIKTTRANLEKFGLQNK--VELIEDEGLKA 98

Query: 273 MRREREFNRL 282
           +    +F +L
Sbjct: 99  LDHIEDFTKL 108


>gi|325130440|gb|EGC53203.1| hypothetical protein NMBOX9930304_0788 [Neisseria meningitidis
           OX99.30304]
          Length = 208

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 32/156 (20%)

Query: 208 GIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRM 264
                 L L+   G+F++  A         V+++   ++ A+ N   N ++    KIVR 
Sbjct: 42  AAGKRFLNLFSYTGSFTVYAATGGAASSETVDLSNTYLDWAKRNFELNGIDTERHKIVRA 101

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM------------- 311
              ++ Q    E              RF  I +DPP        + +             
Sbjct: 102 DVFQYLQTAYGE------------GRRFDLIVMDPPSFSNSKKMLDILDIQRDHKKLIDG 149

Query: 312 ---VQAYPHILYISCNPDSLCRDLSILSTTHTIERL 344
              + A   ILY S N  S   D  ++S  + ++ +
Sbjct: 150 AVKLLASDGILYFSNNLRSFVLD-DLVSEQYAVKDI 184


>gi|295096916|emb|CBK86006.1| Methylase involved in ubiquinone/menaquinone biosynthesis
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 257

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
               +L+L CG G+ S   A+   +V A +++   ++       A  +NNV   +  ++ 
Sbjct: 45  PDAHVLDLGCGAGHASFTAAQQVAQVTAYDLSSQMLDVVAEAAKAKGLNNVTTRQGYAES 104

Query: 269 F 269
            
Sbjct: 105 L 105


>gi|261880481|ref|ZP_06006908.1| methyltransferase [Prevotella bergensis DSM 17361]
 gi|270332820|gb|EFA43606.1| methyltransferase [Prevotella bergensis DSM 17361]
          Length = 397

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 33/157 (21%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAAN--HVNNV 259
           L         +L ++C  G FS+   R   + V +V+ +  +VE    N+  N    +  
Sbjct: 218 LLEHYAKDKTILNMFCYTGGFSVYAMRGGAKLVHSVDSSAKAVELTNRNVELNFPGDSRH 277

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPHI 318
           +     +                K +D +  ++  I +DPP        +   ++ Y  +
Sbjct: 278 EAFCDDA---------------FKYLDANDNKYDLIVLDPPAFAKHRGVLRNALKGYTRL 322

Query: 319 LYISCNPDSLCRDLSILSTT-----HTIERLALFDQF 350
                N     R L  +         +  ++   DQF
Sbjct: 323 -----N----ARGLERIKHGGILFTFSCSQVVTKDQF 350


>gi|300021789|ref|YP_003754400.1| ribosomal L11 methyltransferase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523610|gb|ADJ22079.1| ribosomal L11 methyltransferase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 291

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 211 GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           G +L+L CG+G  ++ +A+     R++A ++   SV+ A  N+  N V     V  +S  
Sbjct: 151 GPVLDLGCGSGVLAIAVAKSLPHARIVAADMDAQSVKVAAENVRINGVARQIKVTEASAT 210

Query: 269 FTQAMRREREFNRL 282
               +R    F+ L
Sbjct: 211 THPDIRSRAPFDLL 224


>gi|254776010|ref|ZP_05217526.1| hypothetical protein MaviaA2_15260 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 250

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           L A   I+G++L+   G G+ ++  A        ++ +  ++E AR N     V+ V   
Sbjct: 44  LVALGAIKGEVLDPGTGPGHHAIYYASQGFSATGIDGSAAAIERARANAHKAGVS-VNFE 102

Query: 263 RMSSKEF 269
              + + 
Sbjct: 103 LADATKL 109


>gi|253997607|ref|YP_003049671.1| HemK family modification methylase [Methylotenera mobilis JLW8]
 gi|253984286|gb|ACT49144.1| modification methylase, HemK family [Methylotenera mobilis JLW8]
          Length = 292

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 160 ICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATK-GIQGDLLELYC 218
           I   R++    L V+  TLI R                ++E  LA         +L+L  
Sbjct: 78  ILGYREFYGLNLKVSPDTLIPRPD-----------TETLVEAALAKIPTDTDYTILDLGT 126

Query: 219 GNGNFSLVLARH--FDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           G G  +L +A+H    +V AV+ ++ ++  A +N     +  V+ 
Sbjct: 127 GTGAVALAIAQHRPHTQVTAVDASQGALHIAEHNAQQLGLTQVRF 171


>gi|240171547|ref|ZP_04750206.1| hypothetical protein MkanA1_19691 [Mycobacterium kansasii ATCC
           12478]
          Length = 270

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 25/127 (19%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
            +L++ CG    ++ LA       V AVE+   ++   R         NV  V       
Sbjct: 42  TVLDVGCGPATITVELAARVAPGSVTAVELTDDALRLGRAEAERRGAANVSFVTSDV--- 98

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDS-- 327
                   +F       +H+++      DP         V  ++    +    C P    
Sbjct: 99  -----HALDFPDDTFDVVHAHQVLQHVADP---------VQALREMRRV----CAPGGVV 140

Query: 328 LCRDLSI 334
             RD   
Sbjct: 141 AARDADY 147


>gi|154493663|ref|ZP_02032983.1| hypothetical protein PARMER_03004 [Parabacteroides merdae ATCC
           43184]
 gi|154086873|gb|EDN85918.1| hypothetical protein PARMER_03004 [Parabacteroides merdae ATCC
           43184]
          Length = 394

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G    + +L  G G  S  L+R   ++  +E      EAA++N +    NN+ I+   + 
Sbjct: 85  GESWTICDLTGGLGIDSYFLSRKAKQLTYIERFPVYCEAAKHNFSVLEANNITIINADAA 144

Query: 268 EFTQAMRREREFNRLKDIDIHSYR--FKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +    +     F         S +  F     +P   GL      +++  PH++
Sbjct: 145 QVVDTLPEVDAFYIDPARRGESNKRVFALQDCEPNLPGL---LPALLKRSPHVI 195


>gi|119508898|ref|ZP_01628050.1| hypothetical protein N9414_21000 [Nodularia spumigena CCY9414]
 gi|119466427|gb|EAW47312.1| hypothetical protein N9414_21000 [Nodularia spumigena CCY9414]
          Length = 271

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
            +  LE +L         +L+L CG G    +L     ++  ++ +   +  AR N    
Sbjct: 9   QLKPLEKILLPRLNQNAQILDLCCGTGQLVQILINQGYQITGIDNSNQMLNYARQNA--- 65

Query: 255 HVNNVKIVRMSSKEF 269
              N K +   +++F
Sbjct: 66  --PNGKFLLADARQF 78


>gi|157164415|ref|YP_001467284.1| ribosomal protein L11 methyltransferase [Campylobacter concisus
           13826]
 gi|254782833|sp|A7ZES6|PRMA_CAMC1 RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|112801954|gb|EAT99298.1| ribosomal protein L11 methyltransferase [Campylobacter concisus
           13826]
          Length = 277

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
            +L          L++ CG+G  S+ LA+   +V A +  + + +++  N   N V   K
Sbjct: 135 QLLQKYAKSGDTALDVGCGSGILSIALAKLGCKVDACDTDEQATQSSLSNAQLNEVKFNK 194

Query: 261 IVRMSSKEFTQA 272
           I   S     Q 
Sbjct: 195 IWTGSIANLEQK 206


>gi|67921525|ref|ZP_00515043.1| UbiE/COQ5 methyltransferase [Crocosphaera watsonii WH 8501]
 gi|67856637|gb|EAM51878.1| UbiE/COQ5 methyltransferase [Crocosphaera watsonii WH 8501]
          Length = 272

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 197 HMLEWVLAA-TKGIQGDLLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIA 252
            +++ +L       +  +L++  G G  S+ +A+       V+ V+IA+  ++ A+    
Sbjct: 28  KLVDLLLEYLDIKPKQTVLDIATGTGLVSIEIAKKVGNDGYVIGVDIAESMLKEAQKKAQ 87

Query: 253 ANHVNNVKIVRMSSKEF 269
             ++NN++ ++   +  
Sbjct: 88  KLNINNLEFLQTDIESL 104


>gi|320539410|ref|ZP_08039079.1| methylase for 50S ribosomal subunit protein L11 [Serratia
           symbiotica str. Tucson]
 gi|320030535|gb|EFW12545.1| methylase for 50S ribosomal subunit protein L11 [Serratia
           symbiotica str. Tucson]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 29/198 (14%)

Query: 116 QAIVTLIYHRLLDDAWRECAIRLRDALHARKY--QIQLIGRANKTKICL------DRDYV 167
           + +  L  H LL   +R    +L D    R++      +   ++  IC       D D V
Sbjct: 68  EVVAMLEQHPLLGAGFRHQVDQLEDKDWEREWMDNFHPMRFGDRLWICPSWRDVPDPDAV 127

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLV- 226
           +  L      L +       T P   +    L+W+       +  +++  CG+G  ++  
Sbjct: 128 NVILDP---GLAFGTG----THPTTALC---LQWLDGLNLAGK-TVIDFGCGSGILAIAA 176

Query: 227 LARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDID 286
           L    +R + ++I   +++A+R N   N V         S+     +  ++    L D+ 
Sbjct: 177 LKLGAERAIGIDIDPQAIQASRDNAQRNGV---------SERLALYLPNDQPAELLADVV 227

Query: 287 IHSYRFKTIFVDPPRSGL 304
           + +     +    P  G 
Sbjct: 228 VANILAGPLRELAPLIGC 245


>gi|319955750|ref|YP_004167017.1| protein-(glutamine-n5) methyltransferase, release factor-specific
           [Cellulophaga algicola DSM 14237]
 gi|319424410|gb|ADV51519.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Cellulophaga algicola DSM 14237]
          Length = 283

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 21/110 (19%)

Query: 195 NVHMLEWVLAATKGIQGDL--LELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
              ++ W+L   +     L  L++  G+G   + LA+H    +V  ++++  ++  A+ N
Sbjct: 98  TEELVRWILGDIEDHHSKLKILDIGTGSGCIPISLAKHLPNSKVYTLDVSGKAIAVAKQN 157

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
              N V         + +F Q          + DI+     F  I  +PP
Sbjct: 158 ARLNKV---------AIDFIQ--------ESILDIETLQEEFDIIVSNPP 190


>gi|317125080|ref|YP_004099192.1| methyltransferase type 12 [Intrasporangium calvum DSM 43043]
 gi|315589168|gb|ADU48465.1| Methyltransferase type 12 [Intrasporangium calvum DSM 43043]
          Length = 254

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 204 AATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIV 262
           A   G Q D+L+L  G G  ++ LA    +V  V+ +  ++ A    +    + +N+  +
Sbjct: 30  ARILGRQLDVLDLGGGTGGVAVPLAEDGHQVTVVDPSPDALAALARRVREAGIHDNLTAI 89

Query: 263 RMSSKEFTQAMRRER 277
           +         +   R
Sbjct: 90  QGDGDTLDSVLSGRR 104


>gi|315633698|ref|ZP_07888988.1| ribosomal protein L11 methyltransferase [Aggregatibacter segnis
           ATCC 33393]
 gi|315477740|gb|EFU68482.1| ribosomal protein L11 methyltransferase [Aggregatibacter segnis
           ATCC 33393]
          Length = 294

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L +       +++  CG+G  ++  L       + ++I   ++ A+R N   N V 
Sbjct: 149 LEW-LDSLDLKDKTVIDFGCGSGILAIAALKLGAKSAVGIDIDPQAILASRNNAEQNGVA 207

Query: 258 NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
           +   + +S ++ +         N L       Y   +  V P
Sbjct: 208 DRLQLFLSDEKPSDLKADVVVANILAGPLKELYPVISQLVKP 249


>gi|313157194|gb|EFR56624.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Alistipes sp. HGB5]
          Length = 280

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 18/108 (16%)

Query: 195 NVHMLEWVLAATKGIQGDLLELYCGNGNF--SLVLARHFDRVLAVEIAKPSVEAARYNIA 252
              +  W+  A       LL++  G+G    +L LA    +V A +I+  ++E A  N  
Sbjct: 96  TEELAAWIAQAKTE-AATLLDVGTGSGCIAATLALALPGAQVYAADISDTALETAARNCR 154

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           A     +     +  +  +                    F  I  +PP
Sbjct: 155 ALGAGVILRKADALSDLAEVFPGP---------------FDVIVSNPP 187


>gi|296242400|ref|YP_003649887.1| methyltransferase [Thermosphaera aggregans DSM 11486]
 gi|296094984|gb|ADG90935.1| methyltransferase [Thermosphaera aggregans DSM 11486]
          Length = 288

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 199 LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANH 255
            E    A +  QG+ ++ ++ G G FS+++A++    RV +++I   + E    NI  N 
Sbjct: 117 YEHKRIAKQVKQGEIVVNMFAGVGLFSIIIAKYSKPERVHSIDINPYAFEYMVENIRLNK 176

Query: 256 VNN-VKIVRMSSKEFTQA 272
           V N V      +KE  + 
Sbjct: 177 VENIVVPYLGDAKEVVEK 194


>gi|292493568|ref|YP_003529007.1| methyltransferase type 11 [Nitrosococcus halophilus Nc4]
 gi|291582163|gb|ADE16620.1| Methyltransferase type 11 [Nitrosococcus halophilus Nc4]
          Length = 231

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +         +L+L CG G  +L +A  +   +V+ VE+ +  +  AR  I    VNN++
Sbjct: 42  VKMMPPNPRRILDLACGTGISTLAIANRYPDCQVVGVELREEYLNIARRKIQKLGVNNIE 101

Query: 261 IVRMSSKEF 269
            V   ++++
Sbjct: 102 WVLSRAEDY 110


>gi|289665704|ref|ZP_06487285.1| 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas campestris
           pv. vasculorum NCPPB702]
 gi|289671282|ref|ZP_06492357.1| 3-demethylubiquinone-9 3-methyltransferase [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 239

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 1/105 (0%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +N   LE+V A        +L++ CG G  S  +AR   +V A+++A   V+ AR + 
Sbjct: 38  HALNPVRLEYVSARLDLAGARVLDVGCGGGLLSESMARLGAQVTAIDLAPELVKVARLHS 97

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
             + V  V     S ++         +     ++  H      I 
Sbjct: 98  LESGVQ-VDYRVQSVEDLAAEQPGSFDAVTCMEMLEHVPDPTAII 141


>gi|288562706|gb|ADC53569.1| FI13095p [Drosophila melanogaster]
          Length = 328

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 119 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 177

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V               E ++     +   ++  
Sbjct: 178 TAIERSKAATVLAAENAKMLGLLNRFEVH----------NHTMEEDKYLPEALKDKKYDL 227

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 228 IISNPP 233


>gi|262301069|gb|ACY43127.1| arg methyltransferase [Libinia emarginata]
          Length = 244

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 211 GDLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKE 268
             +L++ CG G  S+  A+    RV+ +E++   VE A+  I AN+++  V+I+    ++
Sbjct: 24  KTVLDVGCGTGILSMFAAKAGAARVIGIEMSNI-VEHAKKIITANNLDKVVEIIHGKVED 82

Query: 269 FT 270
            T
Sbjct: 83  VT 84


>gi|227829583|ref|YP_002831362.1| Methyltransferase type 11 [Sulfolobus islandicus L.S.2.15]
 gi|227456030|gb|ACP34717.1| Methyltransferase type 11 [Sulfolobus islandicus L.S.2.15]
          Length = 285

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 13/116 (11%)

Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           Q  +L++ CG G  S+ L+R  ++++ ++++K SVE      +   + N+         F
Sbjct: 45  QDKVLDVGCGPGRVSIYLSRFVNQIIGIDVSKSSVEYCNKRTSQLKITNIHC-------F 97

Query: 270 TQAMRREREFNRLKD---IDIHSYRFKTIFVDPPRSG---LDDATVGMVQAYPHIL 319
              +  E     LKD    D+    F TI   P R            +++A   ++
Sbjct: 98  FADITSENTLTMLKDYSPFDVALLLFNTIEGIPKRDNRILALKNINWLLKAQGRLI 153


>gi|194446491|ref|YP_002040189.1| putative metallothionein SmtA [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194405154|gb|ACF65376.1| SmtA protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 267

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV-N 257
           L+ VL    G +  +L+   G G  ++ +A    +V   +++   +  AR    A  V  
Sbjct: 34  LDRVLEEIGGRKLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSK 93

Query: 258 NVKIVRMSSKEFTQAMRREREF 279
           ++  ++  +++    +    + 
Sbjct: 94  DMHFIQCPAQDVASHLESPVDL 115


>gi|163840422|ref|YP_001624827.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
 gi|162953898|gb|ABY23413.1| methyltransferase [Renibacterium salmoninarum ATCC 33209]
          Length = 406

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 8/120 (6%)

Query: 187 FTQPNAGINVHM-LEWVLAATKGIQG--DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS 243
           FTQ        + +  + A      G   + +L CG G  SL  A     V AVE+ + +
Sbjct: 72  FTQAGLEQATRLSVAALHAQRFSNAGVQRIADLGCGIGADSLAFATLDLEVTAVELDETT 131

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFN---RLKDIDIHSYRFKTIFVDPP 300
              A  N+      N K+V+  +  F          +   R       +  F      PP
Sbjct: 132 AACAMMNL--MPFPNAKVVQADAASFDPKAVDGVWLDPARRDTTTSGTARIFDPEASSPP 189


>gi|158339500|ref|YP_001520889.1| hypothetical protein AM1_A0237 [Acaryochloris marina MBIC11017]
 gi|158309741|gb|ABW31357.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 295

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           +L+ +L       G +L++ CG G  S  L +   +V  ++ ++  +  AR N       
Sbjct: 33  LLDKLLFPHLPENGQILDVCCGTGQVSKQLIQQGYQVTGLDGSEKMLHYARENA-----P 87

Query: 258 NVKIVRMSSKEFT 270
             K +   ++ FT
Sbjct: 88  QGKFLLDDARSFT 100


>gi|116619370|ref|YP_821526.1| methyltransferase small [Candidatus Solibacter usitatus Ellin6076]
 gi|116222532|gb|ABJ81241.1| methyltransferase small [Candidatus Solibacter usitatus Ellin6076]
          Length = 488

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 190 PNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARY 249
                  + + ++    +     LL+L  G+G  +L  A++       +IA  SV  A +
Sbjct: 124 VFPAAIENTVAFLATLPETPCTALLDLGTGSGIAALDGAKYASHTWGTDIAARSVHFAEF 183

Query: 250 NIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDA-- 307
           N   N + N  +++        A      F+R+  +    Y          R G +D   
Sbjct: 184 NRRLNGIQNATMLQGD----LYAPVEGLTFDRI--VAHPPYVPARQNAMIFRDGGEDGEQ 237

Query: 308 -TVGMVQAYPHIL 319
              G+V+  P  L
Sbjct: 238 ILRGIVEGLPRFL 250


>gi|73667027|ref|YP_303043.1| 3-demethylubiquinone-9 3-methyltransferase [Ehrlichia canis str.
           Jake]
 gi|72394168|gb|AAZ68445.1| 3-demethylubiquinone-9 3-methyltransferase [Ehrlichia canis str.
           Jake]
          Length = 239

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           +L++ CG G  S  +AR   +V  ++ ++ SV  A+ +    ++ N+    ++     
Sbjct: 59  VLDVGCGGGLLSESMARLGMKVFGIDASEESVNIAKVHALNRNLCNLDYCCVNVDSLV 116


>gi|15902787|ref|NP_358337.1| hypothetical protein spr0743 [Streptococcus pneumoniae R6]
 gi|116516099|ref|YP_816227.1| methyltransferase small subunit [Streptococcus pneumoniae D39]
 gi|15458336|gb|AAK99547.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076675|gb|ABJ54395.1| methyltransferase small domain, putative [Streptococcus pneumoniae
           D39]
          Length = 196

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 20/116 (17%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSS 266
                +L++ CG G   L LA+ +  +   V+I   +++ AR N   N+           
Sbjct: 56  NQGETVLDVGCGYGPLGLSLAKAYGVQATMVDINTRALDLARRNAEKNNAKATIFQSNIY 115

Query: 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
           ++                       F  +  +PP          +++     L  S
Sbjct: 116 EQV-------------------EGHFDHVISNPPIRAGKQVVHEIIEKSKDFLETS 152


>gi|42560604|ref|NP_975055.1| methyltransferase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492100|emb|CAE76697.1| Methyltransferase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|301320502|gb|ADK69145.1| methyltransferase small domain protein [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 240

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 17/98 (17%)

Query: 210 QGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
           +  + +    N    L+L+++   +++ VEI   +VE A  NI  N + + ++I+    K
Sbjct: 41  KKKICDFGTNNAVIPLILSKYTRAKIIGVEIQNKAVEIANENIKLNGLEDQIEIIHADIK 100

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
           EF++               +H+  F  +  +PP   +D
Sbjct: 101 EFSK---------------LHNQEFDLVVCNPPFFKMD 123


>gi|115522953|ref|YP_779864.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Rhodopseudomonas palustris BisA53]
 gi|115516900|gb|ABJ04884.1| modification methylase, HemK family [Rhodopseudomonas palustris
           BisA53]
          Length = 340

 Score = 44.2 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 18/101 (17%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNV 259
            L        ++L+L  G+G  +++ +RHF    V AV+++K ++  A  N+A + +++ 
Sbjct: 167 ALIGDPDAVENVLDLCTGSGCLAILASRHFHNAHVDAVDLSKDALAVAARNVAEHGLDD- 225

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
             + +   +                  +    +  I  +PP
Sbjct: 226 -RIALHHGDLFA--------------PLQGMYYDLIISNPP 251


>gi|323486284|ref|ZP_08091610.1| hypothetical protein HMPREF9474_03361 [Clostridium symbiosum
           WAL-14163]
 gi|323400394|gb|EGA92766.1| hypothetical protein HMPREF9474_03361 [Clostridium symbiosum
           WAL-14163]
          Length = 354

 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 13/98 (13%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             I  +++++    TV    LI RQ               ++E VL   K     +L++ 
Sbjct: 85  QHILGNQEFMGLEFTVDENVLIPRQD-----------TEKLVETVLRDHKNQALSVLDMC 133

Query: 218 CGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAA 253
            G+G  ++ LA    +D+V A +I+K +++ A+ N+  
Sbjct: 134 TGSGCIAVSLAVLGGYDKVTAADISKAALKVAKKNVRR 171


>gi|315653592|ref|ZP_07906512.1| ribosomal protein L11 methyltransferase [Lactobacillus iners ATCC
           55195]
 gi|315488954|gb|EFU78596.1| ribosomal protein L11 methyltransferase [Lactobacillus iners ATCC
           55195]
          Length = 310

 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYN 250
             I   ++  V+      +  +L++  G+G  S+V ++    +V A +I+  ++ +A+ N
Sbjct: 155 THITTQLMLMVMERVLLSEMSVLDVGTGSGILSIVASKFGASKVCATDISDDAIVSAKKN 214

Query: 251 IAANHVNNVK 260
           +A N ++NV+
Sbjct: 215 LALNDIDNVE 224


>gi|302386344|ref|YP_003822166.1| methyltransferase [Clostridium saccharolyticum WM1]
 gi|302196972|gb|ADL04543.1| methyltransferase [Clostridium saccharolyticum WM1]
          Length = 183

 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           L+L+ G+G   +  L+R     + VE    + E  R N+    + +  IV          
Sbjct: 46  LDLFSGSGAIGIEALSRGAGLAVLVEQNPKAAECIRENLKTTKLEDDAIV---------- 95

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHI-----LYISCNPD 326
                    L  ++   + F  +F+DPP + G +   +  +   P I     + +     
Sbjct: 96  -MNCDVMTGLGRLEGKGHVFDLVFMDPPYQEGWEKRVLQYLADSPLIHEDTTIIVE---A 151

Query: 327 SLCRDLSILST-THTIERL 344
           +L      L    + I+R+
Sbjct: 152 ALETSFDYLEEMGYRIKRI 170


>gi|163748711|ref|ZP_02155964.1| ribosomal protein L11 methyltransferase [Shewanella benthica KT99]
 gi|161331821|gb|EDQ02625.1| ribosomal protein L11 methyltransferase [Shewanella benthica KT99]
          Length = 293

 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW L   +    ++++  CG+G  ++  L     +V  ++I   ++EA++ N   N V 
Sbjct: 149 LEW-LDGLELTDKEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVQ 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|152986240|ref|YP_001348482.1| hypothetical protein PSPA7_3123 [Pseudomonas aeruginosa PA7]
 gi|150961398|gb|ABR83423.1| hypothetical protein PSPA7_3123 [Pseudomonas aeruginosa PA7]
          Length = 318

 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 20/88 (22%)

Query: 215 ELYCGNG--NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           ++ CG G     + LA     V  ++I   +++ AR N A   V+N+ + R         
Sbjct: 142 DIGCGAGPGAIRIALACPDAEVHGLDINPAALDLARVNAALAGVDNLTLARSDL------ 195

Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP 300
                       +     RF  I  +PP
Sbjct: 196 ------------LCQAPGRFDLIVANPP 211


>gi|68071417|ref|XP_677622.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56497809|emb|CAH96673.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 579

 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 30/56 (53%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKE 268
           +L++ CG+   SL  + +   V+ ++ A+  +  AR  I AN+  N+ + +   ++
Sbjct: 510 VLDIGCGSSIISLFCSDYAKTVVGIDNAEKILNKARKIIKANNAKNIYLFQGKLED 565


>gi|87121169|ref|ZP_01077060.1| putative methyltransferase [Marinomonas sp. MED121]
 gi|86163661|gb|EAQ64935.1| putative methyltransferase [Marinomonas sp. MED121]
          Length = 217

 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIA 252
           +   +  W+ A   G +    +L+CG+G   L  L+R     + V+ ++   +  + N+A
Sbjct: 52  VRETLFNWINAYVPGAK--CADLFCGSGALGLESLSRSAKSCVFVDASRVVTQQMQQNLA 109

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGM 311
                +   +   +    +      + ++    D     F  +F+DPP R G  +  + +
Sbjct: 110 TLGCKDALTLNQDALTLLKLPLDSLQESQPNLADKAP--FDLVFIDPPFRKGWVENILPL 167

Query: 312 VQ----AYPHILYI 321
           +     A   ++Y+
Sbjct: 168 LTQGWLAEGALVYL 181


>gi|254243649|ref|ZP_04936971.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126197027|gb|EAZ61090.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 256

 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 16/142 (11%)

Query: 189 QPNAGINVHMLEWVLAATKGIQGDL-LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAA 247
           Q        + +W+  A       + ++L  G G F+ +LAR   RV+AVE        A
Sbjct: 21  QGRPEYPEALSDWLRDALGLRPQTVAVDLGAGTGKFTRLLARTGARVVAVEPV-----DA 75

Query: 248 RYNIAANHVNNVKIVRMSSKE------FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR 301
                A  +  V+ +  S++       F  A+   + F+    ++      + +  +  R
Sbjct: 76  MRAQLAEALPQVQALAGSAQSIPLANGFADALVCAQAFHWFATVEALEEMRRVLTAEGGR 135

Query: 302 SGL----DDATVGMVQAYPHIL 319
            GL     D ++  V     I+
Sbjct: 136 LGLVWNVRDESLDWVAEITRII 157


>gi|120598904|ref|YP_963478.1| hypothetical protein Sputw3181_2096 [Shewanella sp. W3-18-1]
 gi|120558997|gb|ABM24924.1| conserved hypothetical protein [Shewanella sp. W3-18-1]
          Length = 335

 Score = 44.2 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRM 264
                 +L L+          A     RV+ V+ +  ++   + N A N V+N  + V+ 
Sbjct: 144 HSQDKTVLNLFSYTCGIGTAAAIGGATRVMNVDFSSFALATGKANAALNQVSNVCEFVQS 203

Query: 265 SSKEFTQAMRRE----REFNRLKDID-IHSYRFKTIFVDPPRSGLDD 306
            +    + +       R   +L     +   +F  +F+DPPR     
Sbjct: 204 DAFPALRQLAGLSVGGRRNQKLPSYPKLVQTQFDLVFLDPPRYAKSA 250


>gi|323693925|ref|ZP_08108112.1| hypothetical protein HMPREF9475_02975 [Clostridium symbiosum
           WAL-14673]
 gi|323502022|gb|EGB17897.1| hypothetical protein HMPREF9475_02975 [Clostridium symbiosum
           WAL-14673]
          Length = 354

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 13/98 (13%)

Query: 158 TKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELY 217
             I  +++++    TV    LI RQ               ++E VL   K     +L++ 
Sbjct: 85  QHILGNQEFMGLEFTVDENVLIPRQD-----------TEKLVETVLRDHKNQALSVLDMC 133

Query: 218 CGNGNFSLVLA--RHFDRVLAVEIAKPSVEAARYNIAA 253
            G+G  ++ LA    +D+V A +I+K +++ A+ N+  
Sbjct: 134 TGSGCIAVSLAVLGGYDKVTAADISKAALKVAKKNVRR 171


>gi|322489947|emb|CBZ25207.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 688

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV--NNVKIVRMSSKEFT 270
           L ++  G G F++  A+   +V A ++   + +  + N   NH+  N++ +  M  ++F 
Sbjct: 441 LFDVMAGVGPFAVPAAKKGVQVFANDLNPVAAQYMKVNAELNHLPANSLHVFNMDGRDFL 500


>gi|322513991|ref|ZP_08067066.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus ureae
           ATCC 25976]
 gi|322120217|gb|EFX92175.1| 3-demethylubiquinone-9 3-methyltransferase [Actinobacillus ureae
           ATCC 25976]
          Length = 236

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 179 IYRQIENSFTQPNAG------INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHF 231
            + ++  ++  PN        +N   L+++   + G+ G  +L++ CG G  S  +AR  
Sbjct: 11  KFEKMAATWWDPNGSFKPIHLLNPLRLDYIQQKSNGLFGKKVLDVGCGGGILSEAMARAG 70

Query: 232 DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
             V  +++    +E AR +   + +  +   + + ++F Q
Sbjct: 71  ANVTGIDMTTEPLEIARKHAEESGLT-IDYQQATIEDFVQ 109


>gi|300717996|ref|YP_003742799.1| S-adenosyl-L-methionine-dependent methyltransferase [Erwinia
           billingiae Eb661]
 gi|299063832|emb|CAX60952.1| putative S-adenosyl-L-methionine-dependent methyltransferase
           [Erwinia billingiae Eb661]
          Length = 277

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNNV 259
             A       +L++  G+G  +L+LA+       V AVE+ + +V  AR N A       
Sbjct: 70  AWAPVAGAQRVLDIGTGSGLIALMLAQRTGQDVEVDAVELDEQAVGQARENAA--ESPWA 127

Query: 260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302
             + +   +     +   +   L   +   +   T    P R+
Sbjct: 128 DRIHVWQDDIVHWSKNAEQRYSLIVSNPPYFVPGTDCASPERA 170


>gi|269959613|ref|ZP_06173994.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835671|gb|EEZ89749.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 239

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 29/143 (20%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             A    Q  +L++  G G  +L+ A+ F   ++ A++I   ++EAA+ N          
Sbjct: 36  AWANCSPQSKILDIGTGTGLLALMCAQRFPNAQITALDIEISAIEAAQKN---------- 85

Query: 261 IVRMSSKEFTQAMRREREFNRLKDI--DIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHI 318
                   FTQ+   +R + R  D+       RF+ I  +PP     + +    +A    
Sbjct: 86  --------FTQSPWSDRLWVRHTDVLQFESEQRFEHIICNPPYFNSGEQSKQSQRATAR- 136

Query: 319 LYISCNPDSLCRDLSILSTTHTI 341
                + D+L +  ++L   + +
Sbjct: 137 -----HTDTL-QHAALLKRCYEL 153


>gi|302550810|ref|ZP_07303152.1| methyltransferase [Streptomyces viridochromogenes DSM 40736]
 gi|302468428|gb|EFL31521.1| methyltransferase [Streptomyces viridochromogenes DSM 40736]
          Length = 268

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            +    L+  + AT     D+L+   G+GNF++ +AR   RV  V+ +  ++ A     A
Sbjct: 18  EVLQDALDRRVKATGRESLDVLDTGGGSGNFAVPVARLGHRVTVVDPSPNALFALERRAA 77

Query: 253 ANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
                + VK V+  +        R          D+        +VD P  G+ +A   +
Sbjct: 78  EAGVADRVKGVQGDAHGLFDVAER-------GAYDVVLCHGVLEYVDDPAEGVRNAVAAL 130


>gi|302538483|ref|ZP_07290825.1| methyltransferase type 12 [Streptomyces sp. C]
 gi|302447378|gb|EFL19194.1| methyltransferase type 12 [Streptomyces sp. C]
          Length = 266

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 15/111 (13%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDL-----LELYCGNGN 222
           DER+ +   T  Y               V   + +        GD+     L L C  G 
Sbjct: 27  DERVPIHLGTSFYDIPAF----------VAGRDSLQDFEPDEVGDVSGKSLLHLQCHIGL 76

Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273
            +L  AR    V  ++ + P+V AA          N + V     +   A+
Sbjct: 77  DTLSWARRGATVTGLDFSGPAVAAAGDLAERIGAGNARFVTADVYDAVDAL 127


>gi|296135229|ref|YP_003642471.1| methyltransferase [Thiomonas intermedia K12]
 gi|295795351|gb|ADG30141.1| methyltransferase [Thiomonas intermedia K12]
          Length = 215

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 212 DLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
            +L+LY G+G   L   +R    VL +E     V A            V++    +    
Sbjct: 68  RVLDLYAGSGALGLEAASRGAASVLLIEQHPRCVAAIAAAAQRLGATQVQVRGADALSCA 127

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDD-ATVGMVQ---AYPHILYISCNPD 326
             + R  E            RF  +F+DPP       A +  VQ   A   ++Y+  +  
Sbjct: 128 HGLARAGE------------RFDIVFIDPPYVSAQQLAALQAVQPLVASQGLVYVETDTA 175

Query: 327 SL 328
            L
Sbjct: 176 EL 177


>gi|219124256|ref|XP_002182424.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406385|gb|EEC46325.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 587

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 213 LLELYCGNGNFSLVLARHFDR---VLAVEIAKPSVEAARYNIAANHVNNV--KIVRMSSK 267
           + + +CG G   L+ A    R   + A +    +VE  R N   NHV++   ++    + 
Sbjct: 373 IADPFCGVGALCLLAASLPQRNCTIWANDWNPKAVEYLRENARRNHVSDRIERLQCGDAY 432

Query: 268 EFTQAM---RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
           +F   M   + ++   R +  D+ +     +    P    D   +      P  L
Sbjct: 433 DFLMDMGLQQHQKASTRSRKEDVTNKDGNHVTPTEPMRLPDHVVMNYPVEAPKFL 487


>gi|254451909|ref|ZP_05065346.1| ribosomal protein L11 methyltransferase [Octadecabacter antarcticus
           238]
 gi|198266315|gb|EDY90585.1| ribosomal protein L11 methyltransferase [Octadecabacter antarcticus
           238]
          Length = 290

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 211 GDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           GD+ ++ CG    ++  A+     V+A +I   +VE A  N+A N + +  +   ++   
Sbjct: 150 GDVADVGCGTAVLAMAAAKTTDANVIASDIDPVAVEVAVVNMATNGMGDAVVCVTAAGFD 209

Query: 270 TQAMRREREFN 280
             A+     F+
Sbjct: 210 DPALADAAPFD 220


>gi|148272649|ref|YP_001222210.1| putative methylase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830579|emb|CAN01514.1| putative methylase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 267

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 212 DLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           D+L++  G G  ++ LA      RV+ +++++  V  A     +    NV+ V  S  E 
Sbjct: 39  DVLDVGSGPGTITVELADLVAPGRVVGLDMSEDVVRQASELATSRGTANVEFVTGSVYEL 98


>gi|86747213|ref|YP_483709.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2]
 gi|86570241|gb|ABD04798.1| RNA methyltransferase [Rhodopseudomonas palustris HaA2]
          Length = 450

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 14/124 (11%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
           + +L    G  +  LA+   RV A++ +   V   R N+A   +   +     + E+   
Sbjct: 255 VADLCAAPGGKTAQLAQAGARVSAIDRSPARVARLRENLARLGLE-AETAVADATEWRSD 313

Query: 273 MRRERE-------------FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHIL 319
                +               R  D+           +   +S L    V +++    ++
Sbjct: 314 APGSFDGVLVDAPCASTGTIRRHPDVAWLKQESDIGALSAVQSRLLHKAVALLKPGGTLV 373

Query: 320 YISC 323
           Y +C
Sbjct: 374 YCTC 377


>gi|68249926|ref|YP_249038.1| hypothetical protein NTHI1574 [Haemophilus influenzae 86-028NP]
 gi|145631801|ref|ZP_01787561.1| HemK [Haemophilus influenzae R3021]
 gi|68058125|gb|AAX88378.1| HemK [Haemophilus influenzae 86-028NP]
 gi|144982591|gb|EDJ90141.1| HemK [Haemophilus influenzae R3021]
          Length = 292

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 58/248 (23%)

Query: 81  LLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLR- 139
             +   ++++      E      L  + + T +S   I+        DD   +  +RL+ 
Sbjct: 5   EWLAQAIVDLAQKNPTENSKIDALVLLQHATGKSRTQILAF------DDTEIDEKVRLKL 58

Query: 140 DALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHML 199
            AL  R+ + + I       I  ++++    L V+  TLI R                ++
Sbjct: 59  TALLDRRLKGEPIAY-----ILGEKEFWSLPLNVSKSTLIPRPD-----------TESLV 102

Query: 200 EWVLA------ATKGIQGDLLELYCGNGNFSLVLARHFD----------RVLAVEIAKPS 243
           E  L               +L+L  G G  +L LA   +           ++ V++    
Sbjct: 103 EKALQIALEKLEENPPHFRILDLGTGTGAIALALASELEPICQKRHIPLEIIGVDLMPDV 162

Query: 244 VEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303
           V  A+ N   N + NV+ ++                      D  + +F  I  +PP   
Sbjct: 163 VALAQSNAERNQL-NVEFLQSR------------------WFDNITGKFDLIVSNPPYID 203

Query: 304 LDDATVGM 311
             D  +  
Sbjct: 204 AQDEHLHQ 211


>gi|24582226|ref|NP_609031.2| CG9531 [Drosophila melanogaster]
 gi|7297118|gb|AAF52386.1| CG9531 [Drosophila melanogaster]
          Length = 323

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 114 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 172

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V               E ++     +   ++  
Sbjct: 173 TAIERSKAATVLAAENAKMLGLLNRFEVH----------NHTMEEDKYLPEALKDKKYDL 222

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 223 IISNPP 228


>gi|325957946|ref|YP_004289412.1| methylase [Methanobacterium sp. AL-21]
 gi|325329378|gb|ADZ08440.1| methylase [Methanobacterium sp. AL-21]
          Length = 197

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 171 LTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH 230
           +T+     +Y   E++F             +        + D+LE+  G G  ++  +++
Sbjct: 7   ITIYTNEEVYEPAEDTFL------------FAENLELNRKDDVLEIGTGTGLIAICASQN 54

Query: 231 FDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
             +V+A +I + +++ A  N+  +   NV+
Sbjct: 55  SRKVIATDINEAAIKCALKNVITHRAYNVE 84


>gi|325125450|gb|ADY84780.1| Protoporphyrinogen oxidase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 280

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
            ARK   +L    +   I     ++  RL VA   LI R                ++EW 
Sbjct: 54  QARKDMKRLAKGDSPQYILGYAWFLGYRLRVAKGVLIPRFE-----------TEELVEWA 102

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA  +     +L+L  G+GN ++ LA+  +                       + ++   
Sbjct: 103 LAHLQDGD-TVLDLGTGSGNITVALAKEAESK--------------------GIKDLHFY 141

Query: 263 RMSSKEFTQAMRREREFN-------RLKDIDIHSYRFKTIFVDPP 300
               K+    +  E   +       R  ++ +   +F  I  +PP
Sbjct: 142 ASDVKDTPLRISEENFLDYGLDVTTRKANVLLGLGKFDLIISNPP 186


>gi|319957419|ref|YP_004168682.1| (LSU ribosomal protein l11p)-lysine n-methyltransferase
           [Nitratifractor salsuginis DSM 16511]
 gi|319419823|gb|ADV46933.1| (LSU ribosomal protein L11P)-lysine N-methyltransferase
           [Nitratifractor salsuginis DSM 16511]
          Length = 277

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 14/148 (9%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
            +A     Q  LL++ CG+G  +L   +    V   +    +VE+A  N   N     KI
Sbjct: 133 AIAEYVTPQDRLLDVGCGSGILALAARKLGATVELCDTDPLAVESAAENFRLNDERFEKI 192

Query: 262 VRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATV--GMVQAYPHIL 319
              S+ +  Q        N + D+ + +   +       R   D   +  G++     I+
Sbjct: 193 WEGSAHKTDQK-YTVVVANIIADV-LKAIAPQL----KARMEKDSLLILSGILDKKEAIV 246

Query: 320 YISCNPDSLCRDLSILSTTHTIERLALF 347
                  +  +DL +L      E + L 
Sbjct: 247 ------SAAFQDLELLERKQRDEWVTLI 268


>gi|317491993|ref|ZP_07950426.1| methyltransferase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920018|gb|EFV41344.1| methyltransferase domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 256

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 189 QPNAGINVHM------LEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAK 241
           Q NA +   +      L+ +    +G   D +L+L CG G+ S  +A     V+A +++ 
Sbjct: 18  QANAYLGSAVHAQGNDLQRLARLLEGDDFDSVLDLGCGAGHASFAVAAQVREVVAYDLSD 77

Query: 242 PSVEAARYNIAANHVNNVKIVRMSSKEF 269
             ++  ++      ++N+ + +  ++  
Sbjct: 78  KMLDVVQHAARDRDIDNLVVQQGVAESL 105


>gi|300812482|ref|ZP_07092908.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|313123398|ref|YP_004033657.1| protein-(glutamine-n5) methyltransferase, release factor-specific
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|300496543|gb|EFK31639.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|312279961|gb|ADQ60680.1| Protein-(Glutamine-N5) methyltransferase, release factor-specific
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 280

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 143 HARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWV 202
            ARK   +L    +   I     ++  RL VA   LI R                ++EW 
Sbjct: 54  QARKDMKRLAKGDSPQYILGYAWFLGYRLRVAKGVLIPRFE-----------TEELVEWA 102

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LA  +     +L+L  G+GN ++ LA+  +                       + ++   
Sbjct: 103 LAHLQDGD-TVLDLGTGSGNITVALAKEAESK--------------------GIKDLHFY 141

Query: 263 RMSSKEFTQAMRREREFN-------RLKDIDIHSYRFKTIFVDPP 300
               K+    +  E   +       R  ++ +   +F  I  +PP
Sbjct: 142 ASDVKDTPLRISEENFLDYGLDVTTRKANVLLGLGKFDLIISNPP 186


>gi|317126847|ref|YP_004093129.1| methyltransferase small [Bacillus cellulosilyticus DSM 2522]
 gi|315471795|gb|ADU28398.1| methyltransferase small [Bacillus cellulosilyticus DSM 2522]
          Length = 200

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 20/116 (17%)

Query: 207 KGIQGDLLELYCGNGNFSLVLARHFDRV--LAVEIAKPSVEAARYNIAANHVNNVKIVRM 264
             + G ++++ CG G  S+ LA+    +  +A++I + +V+    N+  N V N+ +++ 
Sbjct: 56  PNVVGTIVDVGCGWGPISISLAKRNPNIDFIALDINERAVKLTEENVKLNGVTNLHVMQS 115

Query: 265 SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHIL 319
           +  E                       +  I  +PP R+G +       QA   ++
Sbjct: 116 NLLE-----------------GHEGKYYSAIITNPPIRAGKNTVFKLYEQAANALV 154


>gi|190894546|ref|YP_001984839.1| putative methyltransferase [Rhizobium etli CIAT 652]
 gi|190700207|gb|ACE94289.1| putative methyltransferase protein [Rhizobium etli CIAT 652]
          Length = 259

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           +AA  G    +L++ CG G  +   AR       + V++    +E AR   AA  + NV 
Sbjct: 22  IAAGVGRGDRVLDIGCGAGQTTREAARAAPQGEAVGVDVLAEMLEVARQRSAAEGLRNVV 81

Query: 261 IVRMSS 266
             +  +
Sbjct: 82  FEQADA 87


>gi|159488779|ref|XP_001702380.1| Mg protoporphyrin IX S-adenosyl methionine O-methyl transferase
           [Chlamydomonas reinhardtii]
 gi|158271174|gb|EDO97000.1| Mg protoporphyrin IX S-adenosyl methionine O-methyl transferase
           [Chlamydomonas reinhardtii]
          Length = 326

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 6/138 (4%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
           +A     +L WV          + +  CG G+ ++ LA     V A +I+      A   
Sbjct: 134 HAQTVDKVLRWVDEEGSVQGITVADCGCGTGSLAIPLALRGAAVSASDISAAMASEAEQR 193

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
                   V   +  + +           +     D  +     + +  P+  +D     
Sbjct: 194 YQQA----VAAGQGKAPKVAPKFEALDLESVKGKYD--TVTCLDVMIHYPQDKVDAMITH 247

Query: 311 MVQAYPHILYISCNPDSL 328
           +       L IS  P +L
Sbjct: 248 LAGLSDRRLIISFAPKTL 265


>gi|222479460|ref|YP_002565697.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
 gi|222452362|gb|ACM56627.1| Methyltransferase type 11 [Halorubrum lacusprofundi ATCC 49239]
          Length = 216

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 214 LELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSK 267
           L++ CGNG  + +LA   D V+ V++++  +  A         +     V   + 
Sbjct: 44  LDIGCGNGRHTELLAERADAVVGVDLSRELLREAVARARERGYDGTASFVHGDAA 98


>gi|149178567|ref|ZP_01857154.1| hypothetical protein PM8797T_13620 [Planctomyces maris DSM 8797]
 gi|148842585|gb|EDL56961.1| hypothetical protein PM8797T_13620 [Planctomyces maris DSM 8797]
          Length = 274

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 214 LELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFT 270
           L++ CG G+ +  LAR      RV+ V+I +  +  AR   A   + N++     + E +
Sbjct: 50  LDVGCGGGDVTCELARRVAPVGRVVGVDIDETKLSIARQEAAEQGLTNIEFRLSDASEIS 109

Query: 271 QAMRREREFNRL 282
                +  ++R 
Sbjct: 110 ATPEFDLVYSRF 121


>gi|146337403|ref|YP_001202451.1| putative methyltransferase [Bradyrhizobium sp. ORS278]
 gi|146190209|emb|CAL74201.1| conserved hypothetical protein; putative methyltransferase
           [Bradyrhizobium sp. ORS278]
          Length = 275

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAA 247
           N   N   L++ L +     G  +++    G F+L LARH     RV+AVE    +    
Sbjct: 79  NPDYNREELDF-LRSHVPPAGTAVDVGANVGTFALPLARHVGPAGRVIAVEPHPVTHARL 137

Query: 248 RYNIAANHVNNVKIVRMSSKE 268
            +N  A+ ++ V++V  ++ +
Sbjct: 138 SFNRDASALSQVRLVAAAAGD 158


>gi|78185672|ref|YP_378106.1| Mg-protoporphyrin IX methyl transferase [Synechococcus sp. CC9902]
 gi|78169966|gb|ABB27063.1| Mg-protoporphyrin IX methyltransferase [Synechococcus sp. CC9902]
          Length = 237

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANH 255
            ++ W+  +         +  CG G+ SL LA      V A +I+   V+ A        
Sbjct: 56  EVVSWIQESGAVHNVSFCDAGCGVGSLSLPLAAMGAGSVHASDISAAMVQEAERRAREAG 115

Query: 256 VNNVK 260
           ++  K
Sbjct: 116 LDMGK 120


>gi|19920612|ref|NP_608733.1| CG9643 [Drosophila melanogaster]
 gi|7295871|gb|AAF51171.1| CG9643 [Drosophila melanogaster]
 gi|19527863|gb|AAL90046.1| AT11165p [Drosophila melanogaster]
 gi|220949650|gb|ACL87368.1| CG9643-PA [synthetic construct]
 gi|220958496|gb|ACL91791.1| CG9643-PA [synthetic construct]
          Length = 219

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 199 LEWVL--AATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254
           ++W+L           +L+L CGNG F + LA       +  V+ +  +VE A+     N
Sbjct: 47  IDWLLNEEKIDKEASRVLDLGCGNGMFLVGLANEGFTGDLTGVDYSPKAVELAQNIAEDN 106

Query: 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-----RSGLDDATV 309
            ++    +     + TQ      +F+ + D       +  + + P      R+   D   
Sbjct: 107 KLS----ITYKVADLTQPQNELGQFDVVHDKG----TYDAVSLCPDNAKEKRALYLDTVE 158

Query: 310 GMVQ-AYPHILYISCN 324
            +++ A    +  SCN
Sbjct: 159 KLLRTADSLFVITSCN 174


>gi|68536287|ref|YP_250992.1| putative DNA methylase [Corynebacterium jeikeium K411]
 gi|68263886|emb|CAI37374.1| putative DNA methylase [Corynebacterium jeikeium K411]
          Length = 189

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 213 LLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L+L+ G+G   L   +R    V  V+ +  +++  + N        V++V   +  F  
Sbjct: 47  VLDLFAGSGALGLEAASRGAKEVTLVDNSDAAIKTIKDNARVVPEAKVQVVEAKASSFLA 106

Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQA 314
              R                +  +  DPP    D+A   MV+A
Sbjct: 107 GAPR--------------NHYTMVLADPPYELTDEAVAEMVEA 135


>gi|146293010|ref|YP_001183434.1| hypothetical protein Sputcn32_1912 [Shewanella putrefaciens CN-32]
 gi|145564700|gb|ABP75635.1| conserved hypothetical protein [Shewanella putrefaciens CN-32]
          Length = 321

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRM 264
                 +L L+          A     RV+ V+ +  ++   + N A N V+N  + V+ 
Sbjct: 130 HSQDKTVLNLFSYTCGIGTAAAIGGATRVMNVDFSSFALATGKANAALNQVSNVCEFVQS 189

Query: 265 SSKEFTQAMRRE----REFNRLKDID-IHSYRFKTIFVDPPRSGLDD 306
            +    + +       R   +L     +   +F  +F+DPPR     
Sbjct: 190 DAFPALRQLAGLSVGGRRNQKLPSYPKLVQTQFDLVFLDPPRYAKSA 236


>gi|327188081|gb|EGE55307.1| putative methyltransferase protein [Rhizobium etli CNPAF512]
          Length = 287

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 15/113 (13%)

Query: 213 LLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L++ CG G  SL LA        VL V+I++P +  AR             V   + + 
Sbjct: 50  VLDVGCGAGASSLDLAARVGAEGHVLGVDISEPLIGRARERA-----PQDTPVLFQAADA 104

Query: 270 TQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYIS 322
           + A   E  F      DI   RF  +F D P +G        ++    + ++ 
Sbjct: 105 SSAELPEGAF------DILFSRFGVMFFDDP-TGAFAHMRRALKPGGRVAFVC 150


>gi|227875296|ref|ZP_03993438.1| methyltransferase (methylase) [Mobiluncus mulieris ATCC 35243]
 gi|227844201|gb|EEJ54368.1| methyltransferase (methylase) [Mobiluncus mulieris ATCC 35243]
          Length = 187

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 18/110 (16%)

Query: 211 GDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSKE 268
             +L+++ G+G   L  L+R     + V+ A+ +V+  R N AA      V++V   +  
Sbjct: 45  ARVLDIFAGSGALGLEALSRGATDAMLVDSARGAVQVLRANAAALSAGERVQVVGADAVR 104

Query: 269 FTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS---GLDDATVGMVQAY 315
           F  ++               + RF  +F+DPP +   G+ D  +  V  +
Sbjct: 105 FAASLGA-------------NERFDLVFIDPPYTLDSGILDQVLSSVATH 141


>gi|322617130|gb|EFY14036.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322617565|gb|EFY14464.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624806|gb|EFY21635.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322630356|gb|EFY27126.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322634536|gb|EFY31269.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322639247|gb|EFY35939.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640110|gb|EFY36777.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322645672|gb|EFY42196.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322652034|gb|EFY48397.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656207|gb|EFY52504.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322659359|gb|EFY55606.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665819|gb|EFY62002.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669943|gb|EFY66084.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673928|gb|EFY70025.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322678687|gb|EFY74743.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322683519|gb|EFY79533.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687594|gb|EFY83564.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323193572|gb|EFZ78777.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323198479|gb|EFZ83581.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323204591|gb|EFZ89594.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208471|gb|EFZ93410.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323213607|gb|EFZ98397.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218357|gb|EGA03067.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219685|gb|EGA04166.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225680|gb|EGA09906.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323232351|gb|EGA16454.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323235616|gb|EGA19700.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323241225|gb|EGA25261.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323244967|gb|EGA28969.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323250086|gb|EGA33980.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323253870|gb|EGA37695.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323255339|gb|EGA39111.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262798|gb|EGA46349.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264173|gb|EGA47680.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323270871|gb|EGA54309.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 310

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 133 ECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNA 192
           E    +   +     +I +    NK   C    YVDER+ V  R+ I   I N F     
Sbjct: 72  EKHRIVERVIRRINERIPVAYLTNKAWFCGHEFYVDERVLV-PRSPIGELINNHF----- 125

Query: 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYN 250
                               +L++  G+G  ++  A  F    V AV+I+  ++  A +N
Sbjct: 126 ----------AGLISQQPKYILDMCTGSGCIAIACAYAFPDSEVDAVDISPDALAVAEHN 175

Query: 251 IAANH-VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
           I  +  +++V  +R               F  L  +     ++  I  +PP
Sbjct: 176 IEEHGLIHHVTPIRSD------------LFRDLPKV-----QYDLIVTNPP 209


>gi|169627967|ref|YP_001701616.1| hypothetical protein MAB_0868c [Mycobacterium abscessus ATCC 19977]
 gi|169239934|emb|CAM60962.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 262

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
           LAA   ++G +L++ CG G  S+ L +    V  ++ +  ++E A+   AA  V  V + 
Sbjct: 48  LAAYGALRGAILDIGCGLGENSIYLTQQGLSVTGLDFSPSAIEQAKQRAAAAGVT-VDLH 106

Query: 263 RMSSKEF 269
              + + 
Sbjct: 107 VADATKL 113


>gi|126726040|ref|ZP_01741882.1| N-6 Adenine-specific DNA methylase [Rhodobacterales bacterium
           HTCC2150]
 gi|126705244|gb|EBA04335.1| N-6 Adenine-specific DNA methylase [Rhodobacterales bacterium
           HTCC2150]
          Length = 246

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 2/111 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD-RVLAVEIAKPSVEAARYNIAANHVNNVK 260
             A        +LEL CG G  SL L    D  V  +E+       AR N A N    + 
Sbjct: 32  AAACLAKPGQTVLELGCGVGVASLCLMSRVDVSVTGLELQSDYAALARQNAARNQFE-MD 90

Query: 261 IVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGM 311
           I+          +R +   + + +   +     T   D  R   +   + +
Sbjct: 91  IIEGDIAALPSELREQSFDHVIANPPYYPKGGGTSAADAGREFANREILDL 141


>gi|118576869|ref|YP_876612.1| methyltransferase [Cenarchaeum symbiosum A]
 gi|118195390|gb|ABK78308.1| methyltransferase [Cenarchaeum symbiosum A]
          Length = 275

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 8/138 (5%)

Query: 183 IENSFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDR-VLAVEIA 240
           +E +F  P         E    A     G+ ++ ++ G G FS+  AR     V +++  
Sbjct: 98  VERAFFSP-----RLSTERARIAALVRDGETIVNMFAGIGTFSITAARLKKCLVYSIDTN 152

Query: 241 KPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDP 299
             +      N A N +   V  +   ++E  +   R      L  +   S  F     D 
Sbjct: 153 AEATRLCEQNAAKNKLAGTVVPITGDAREVIRGKLRGIADRVLMVLPEDSIGFLPDAADA 212

Query: 300 PRSGLDDATVGMVQAYPH 317
            +SG        V +   
Sbjct: 213 AKSGCIIHFYSHVHSDER 230


>gi|221065164|ref|ZP_03541269.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni
           KF-1]
 gi|220710187|gb|EED65555.1| ribosomal protein L11 methyltransferase [Comamonas testosteroni
           KF-1]
          Length = 296

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN 257
           L W+    +   G  L+  CG+G  ++  A+     V AV+I   +VE+  YN +ANHV 
Sbjct: 154 LRWIARQPQATLGRTLDYGCGSGILAIGAAKFGATDVDAVDIDPAAVESTNYNSSANHVE 213


>gi|88602601|ref|YP_502779.1| putative methyltransferase [Methanospirillum hungatei JF-1]
 gi|88188063|gb|ABD41060.1| putative methyltransferase [Methanospirillum hungatei JF-1]
          Length = 291

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 27/59 (45%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
           +L++  G G  +L LA+    V  VE A   V     NIA    +N+KI+    ++   
Sbjct: 70  VLDIGGGPGTIALPLAQKGAHVTVVEPAVGIVSVLSDNIADQGFSNIKIIHSRWEDVLP 128


>gi|24373998|ref|NP_718041.1| hypothetical protein SO_2451 [Shewanella oneidensis MR-1]
 gi|24348456|gb|AAN55485.1|AE015686_6 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 380

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 207 KGIQGDLLELYCGNGNFSLVLA-RHFDRVLAVEIAKPSVEAARYNIAANHV-NNVKIVRM 264
                 +L L+          A    +RV+ V+ +  ++ A R N   N V    + V+ 
Sbjct: 189 HSQDKTVLNLFSYTCGIGTAAAMGGAERVVNVDFSSFALAAGRTNAELNQVSEVCEFVQS 248

Query: 265 SSKEFTQAMRRE----REFNRLKDID-IHSYRFKTIFVDPPRSGLDD 306
            +    + +       R  ++L     +   +F  +F+DPPR     
Sbjct: 249 DAFPALRQLAGLSVGGRRNHKLPSYPKLAQTQFDLVFLDPPRYAKSA 295


>gi|113968745|ref|YP_732538.1| ribosomal protein L11 methyltransferase [Shewanella sp. MR-4]
 gi|114049111|ref|YP_739661.1| ribosomal protein L11 methyltransferase [Shewanella sp. MR-7]
 gi|117918857|ref|YP_868049.1| ribosomal protein L11 methyltransferase [Shewanella sp. ANA-3]
 gi|123131003|sp|Q0HQK1|PRMA_SHESR RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|123325435|sp|Q0HN86|PRMA_SHESM RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|166223441|sp|A0KS74|PRMA_SHESA RecName: Full=Ribosomal protein L11 methyltransferase; Short=L11
           Mtase
 gi|113883429|gb|ABI37481.1| LSU ribosomal protein L11P methyltransferase [Shewanella sp. MR-4]
 gi|113890553|gb|ABI44604.1| LSU ribosomal protein L11P methyltransferase [Shewanella sp. MR-7]
 gi|117611189|gb|ABK46643.1| LSU ribosomal protein L11P methyltransferase [Shewanella sp. ANA-3]
          Length = 293

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLV-LARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
           LEW+ +     + ++++  CG+G  ++  L     +V  ++I   ++EA++ N   N V 
Sbjct: 149 LEWLDSLDLSNE-EVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIEASKANAERNDVA 207

Query: 258 N 258
           +
Sbjct: 208 D 208


>gi|332712225|ref|ZP_08432153.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya
           majuscula 3L]
 gi|332349031|gb|EGJ28643.1| methylase involved in ubiquinone/menaquinone biosynthesis [Lyngbya
           majuscula 3L]
          Length = 447

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 14/130 (10%)

Query: 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA-ANHVNNVKIVRMSSKEFT 270
           ++LEL  G+G FS+ L     +V  +EI    +  AR N++       ++++    + F 
Sbjct: 233 EVLELASGSGRFSIHLLEKGAQVTGIEIDAGMLNQARVNLSDWLKKGQLELIHGDIRRFE 292

Query: 271 QAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSLCR 330
             ++R+ +F       +       I     R          ++    +L I+ NP     
Sbjct: 293 --LKRQFDF-----AFLSGEVLGEISEVEDRYRAFQCISTHLKPGARLLIITDNPG---- 341

Query: 331 DLSILSTTHT 340
               L   + 
Sbjct: 342 --YYLQGGYR 349


>gi|322786722|gb|EFZ13091.1| hypothetical protein SINV_07585 [Solenopsis invicta]
          Length = 383

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 20/105 (19%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL 227
           +E L    RT+ YR                M              +L++ CG G  S+  
Sbjct: 74  EEMLKDEVRTVTYRNS--------------MY---HNKHLFKGKTVLDIGCGTGILSMFA 116

Query: 228 ARH-FDRVLAVEIAKPSVEAARYNIAANHVNNV-KIVRMSSKEFT 270
           A+    +V+ +E +   VE A   + AN+++NV  I++   +E +
Sbjct: 117 AKAGAAKVIGIECSNI-VEYAEKIVEANNLSNVITILKGKVEEVS 160


>gi|269216760|ref|ZP_06160614.1| methlytransferase, UbiE/COQ5 family [Slackia exigua ATCC 700122]
 gi|269129848|gb|EEZ60931.1| methlytransferase, UbiE/COQ5 family [Slackia exigua ATCC 700122]
          Length = 197

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNF-SLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVK 260
           V A      G +++  CG G   +  L      V+ V++A+  V  AR         +V+
Sbjct: 32  VAALADCADGRVIDAGCGTGTMVAHCLTAGAREVVGVDVAEEMVARARK--RFADETHVR 89

Query: 261 IVRMSSKEFTQ 271
            +     +   
Sbjct: 90  FIACDICDVAD 100


>gi|268326445|emb|CBH40033.1| conserved hypothetical protein, SAM-dependent methyltransferase
           type 11 family [uncultured archaeon]
          Length = 274

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
               ++LE+  G G F +  AR   +  AVE AK   E  R N     ++N +I+
Sbjct: 62  NSDSEILEIGAGPGTFVIPFARKVKKFTAVEPAKGMAEKIRRNAKEAEIDNFEII 116


>gi|291084605|ref|ZP_06540085.2| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 200

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|289826565|ref|ZP_06545628.1| hypothetical protein Salmonellentericaenterica_14422 [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
          Length = 224

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 194 INVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAA 253
           +    + W+          +L+L CG G ++ +LA        V+ +  S+  AR    A
Sbjct: 51  VIEQQVTWITR-QLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASITWARQQAQA 109

Query: 254 NHVNNVKIVRMS 265
            ++ N+  ++  
Sbjct: 110 ANL-NIDYIQQD 120


>gi|225571516|ref|ZP_03780512.1| hypothetical protein CLOHYLEM_07614 [Clostridium hylemonae DSM
           15053]
 gi|225159593|gb|EEG72212.1| hypothetical protein CLOHYLEM_07614 [Clostridium hylemonae DSM
           15053]
          Length = 285

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 30/175 (17%)

Query: 166 YVDERLTVAGRTLIYRQIENSFTQP--NAGINVHMLEWVLAA--TKGIQGDLLELYCGNG 221
           ++ E+  +  + L +     SF           +  +W        G    +L L+   G
Sbjct: 68  HLPEQWQIHYKELTFNLKPFSFKHTGLFPEQAANW-DWFSDKIKHAGRPVKVLNLFAYTG 126

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNN--VKIVRMSSKEFTQAMRREREF 279
             +L  A     V  V+ +K  V  A+ N A++ +++  V+ +     +F      ERE 
Sbjct: 127 GATLAAAAAGASVTHVDASKGMVAWAKENAASSGLSDRPVRWLVDDCVKFV-----EREI 181

Query: 280 NRLKDIDIHSYRFKTIFVDPPRSG---------LDDATVGMVQAYPHILYISCNP 325
            R         ++  + +DPP  G         ++DA   +++    IL  S NP
Sbjct: 182 RR-------GSKYDAVIMDPPSYGRGPKGEIWKIEDAIHPLIRLCTRIL--SDNP 227


>gi|210623863|ref|ZP_03294098.1| hypothetical protein CLOHIR_02049 [Clostridium hiranonis DSM 13275]
 gi|210153289|gb|EEA84295.1| hypothetical protein CLOHIR_02049 [Clostridium hiranonis DSM 13275]
          Length = 320

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 203 LAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VK 260
           L         + ++ CG+G  ++  A+   + V AV++ + +VE A+ N+  ++V + V 
Sbjct: 176 LEKYVTPDAKVFDIGCGSGILAIAAAKLGANDVTAVDLDEVAVEVAKENVKESNVEDKVT 235

Query: 261 IVRMSSKEFTQAMRREREFNRLKDI 285
           ++  +  +           N + DI
Sbjct: 236 VLHGNLTDVIHDKADVVVANIIADI 260


>gi|116811593|emb|CAL25963.1| CG9531 [Drosophila melanogaster]
 gi|223966745|emb|CAR93109.1| CG9531-PA [Drosophila melanogaster]
 gi|223966747|emb|CAR93110.1| CG9531-PA [Drosophila melanogaster]
 gi|223966761|emb|CAR93117.1| CG9531-PA [Drosophila melanogaster]
 gi|223966763|emb|CAR93118.1| CG9531-PA [Drosophila melanogaster]
 gi|223966765|emb|CAR93119.1| CG9531-PA [Drosophila melanogaster]
          Length = 323

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 13/126 (10%)

Query: 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVL- 235
            +  +   + F  P       M   +         DLLE+ CG+G  SL +     +V+ 
Sbjct: 114 DITLKTSPSVFI-PRPETEEFMRLVIDDHKNAKHVDLLEVGCGSGAMSLSMLHSLPQVVA 172

Query: 236 -AVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKT 294
            A+E +K +   A  N     + N   V               E ++     +   ++  
Sbjct: 173 TAIERSKAATVLAAENAKMLGLLNRFEVH----------NHTMEEDKYLPEALKDKKYDL 222

Query: 295 IFVDPP 300
           I  +PP
Sbjct: 223 IISNPP 228


>gi|187477843|ref|YP_785867.1| 3-demethylubiquinone-9 3-methyltransferase [Bordetella avium 197N]
 gi|109895664|sp|Q2L2T5|UBIG_BORA1 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|115422429|emb|CAJ48954.1| 3-demethylubiquinone-9 3-methyltransferase [Bordetella avium 197N]
          Length = 241

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 21/157 (13%)

Query: 192 AGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
             IN   LEW+      +QG  +L++ CG G  S  +A+    V  +++A+ S++ AR +
Sbjct: 40  HAINPLRLEWIQELAGSLQGRRVLDVGCGGGILSEAMAQAGADVTGIDLAEKSLKIARLH 99

Query: 251 IAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
              + V  V+   +  +E       + +     ++  H     ++           A   
Sbjct: 100 GLESGVK-VEYRAVPVEELATEQAGQYDIVTCMEMLEHVPDPNSVV---------RACAA 149

Query: 311 MVQAYPHILYISCNPDSLCRD-----LSILSTTHTIE 342
           +V+    + +      +L R+      +I+   + + 
Sbjct: 150 LVKPGGWVFF-----STLNRNPKSFLFAIIGAEYVLR 181


>gi|319786046|ref|YP_004145521.1| protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464558|gb|ADV26290.1| Protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 220

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             +   ML   L    G    +LE+  G+G  +  LA     V+++E+     +AAR  +
Sbjct: 65  PVVEGRML-QALELQGG--DSVLEIGTGSGYTTACLAALAREVVSIEVVPELADAARERL 121

Query: 252 AANHV-NNVKIVRMSSKEFTQ 271
               +  NV+++   + E+T 
Sbjct: 122 ERTGLGTNVRVLAADAMEYTP 142


>gi|290967768|ref|ZP_06559321.1| methyltransferase small domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290782127|gb|EFD94702.1| methyltransferase small domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 252

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 16/122 (13%)

Query: 199 LEWVLAATKGIQGD--LLELYCGNGNFSLVL-ARHFDRVLAVEIAKPSVEAARYNIAANH 255
           L+ VL A  G      +L+L  G G   L+L AR    V A+E+     + A  N+  NH
Sbjct: 30  LDTVLLANFGSVPHSPVLDLGTGTGAIPLILTARGVRAVTALELNPIMADIAARNVILNH 89

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAY 315
               + +R+   ++ Q               + S  F  ++ +PP           V   
Sbjct: 90  KE--ESIRIKHGDYRQ-----------PGKWLKSGSFAAVYANPPYREKQRGAYSPVPGI 136

Query: 316 PH 317
             
Sbjct: 137 RR 138


>gi|281413201|ref|YP_003347280.1| Methyltransferase type 12 [Thermotoga naphthophila RKU-10]
 gi|281374304|gb|ADA67866.1| Methyltransferase type 12 [Thermotoga naphthophila RKU-10]
          Length = 254

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 201 WVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
            +L         +L++ CG G F++ +A+    V+ V+++   +  AR    
Sbjct: 30  KILENFHIRGKKVLDVACGEGTFAVEIAKQGFEVVGVDLSPEMLNFARERAK 81


>gi|290961578|ref|YP_003492760.1| methyltransferase [Streptomyces scabiei 87.22]
 gi|260651104|emb|CBG74225.1| putative methyltransferase [Streptomyces scabiei 87.22]
          Length = 219

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 39/128 (30%), Gaps = 9/128 (7%)

Query: 192 AGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNI 251
             + +     +         D+L+L CG G+ SL+      RV  V+ ++  V  AR   
Sbjct: 48  PAVRMAWAARLRDWLPRRGCDVLDLGCGTGSLSLLATEQGHRVTGVDASRAMVALAR--A 105

Query: 252 AANHVNNVKIVRMSS------KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD 305
                  V  +   +      +E    +        L D       +  +     R  L 
Sbjct: 106 KLAGRPAV-FLVGDAAAPPVGEERFDVVLVRHVLWTLPDPGRALRHWCGLLRPGGRLVLV 164

Query: 306 DATVGMVQ 313
           +   G + 
Sbjct: 165 EGVWGTLS 172


>gi|254882057|ref|ZP_05254767.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319640935|ref|ZP_07995644.1| hypothetical protein HMPREF9011_01241 [Bacteroides sp. 3_1_40A]
 gi|254834850|gb|EET15159.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317387454|gb|EFV68324.1| hypothetical protein HMPREF9011_01241 [Bacteroides sp. 3_1_40A]
          Length = 262

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 179 IYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAV 237
             RQ   S       + +  L ++   T   +  + +L CG G  +++LA+H   ++  +
Sbjct: 23  TERQGPGS-----PEVTLKALSFIDNLTD--KSLIADLGCGTGGQTMILAQHAPGKITGI 75

Query: 238 EIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
           +     +E    N    ++ N VK +  S  + +
Sbjct: 76  DFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLS 109


>gi|297560838|ref|YP_003679812.1| methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845286|gb|ADH67306.1| Methyltransferase type 11 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 219

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 13/119 (10%)

Query: 208 GIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSK 267
           G     LEL  G GN    LA    +   V+++  SVE AR+          +     + 
Sbjct: 48  GEPASALELGAGRGNAVAALASRGVKAAGVDVSPVSVEHARHQWGHLG---AEFHHADAV 104

Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPD 326
           EF     +  +        ++S      F DP    L       +++    ++ SC P 
Sbjct: 105 EFLAGTGQRWDA-------VYSVWGAAWFTDP--GVLFPLVHDRLESGGRFVF-SCAPA 153


>gi|261401204|ref|ZP_05987329.1| methyltransferase domain protein [Neisseria lactamica ATCC 23970]
 gi|269208782|gb|EEZ75237.1| methyltransferase domain protein [Neisseria lactamica ATCC 23970]
          Length = 367

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 197 HMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAANH 255
             L+ +  A        L++  G+G  + +LA+     V+  +    +V  AR NIA   
Sbjct: 176 EYLDLLAQAPSTGFQTALDIGTGSGVLAAILAKQGIPSVIGTDTNPRAVACARANIARLG 235

Query: 256 VNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG 310
           +   K V +   +    MR +        +           +  P S +  A + 
Sbjct: 236 LE--KQVEIRETDMFPDMRADLIVCNPPWLPAKPTSAVESALYDPDSAMLAAFLR 288


>gi|197261753|ref|ZP_03161827.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197240008|gb|EDY22628.1| putative SAM-dependent methyltransferase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
          Length = 541

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 8/104 (7%)

Query: 168 DERLTVAGRTLIYRQIENSFTQPNA------GINVHMLEWVLAATKGIQGDLLELYCGNG 221
           + ++         R +EN  +Q +        +    + W+          +L+L CG G
Sbjct: 19  EGKIPWDEPAFSQRILENHLSQDHDWASRRLTVIEQQVTWITR-QLPAGACILDLGCGPG 77

Query: 222 NFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMS 265
            ++ +LA        V+ +  S+  AR    A ++ N+  ++  
Sbjct: 78  FYTRLLAERGFHCTGVDFSPASITWARQQAQAANL-NIDYIQQD 120


>gi|57234541|ref|YP_181422.1| hypothetical protein DET0680 [Dehalococcoides ethenogenes 195]
 gi|57234615|ref|YP_181388.1| hypothetical protein DET0646 [Dehalococcoides ethenogenes 195]
 gi|57224989|gb|AAW40046.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195]
 gi|57225063|gb|AAW40120.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195]
          Length = 280

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 196 VHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAAN 254
                W+        G  + +  CG G ++  LA     V  ++ +  S+  AR + +A+
Sbjct: 53  EKSARWIAEYFGLGDGKRVCDFGCGPGLYTSHLAAAGADVTGIDFSSRSIAYARESASAH 112

Query: 255 HVNNVKIVRMSSKEFTQ 271
           +++ +  +  +  EF  
Sbjct: 113 NLD-IHYIEQNYLEFAA 128


>gi|158312865|ref|YP_001505373.1| HemK family modification methylase [Frankia sp. EAN1pec]
 gi|158108270|gb|ABW10467.1| modification methylase, HemK family [Frankia sp. EAN1pec]
          Length = 334

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 10/115 (8%)

Query: 195 NVHMLEWVLAATKGIQGDL------LELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEA 246
              + EW +AA +     +      ++L  G+G  +L +A       V AVE+   ++  
Sbjct: 110 TEWVAEWAIAALRSPDAVVAGRPICVDLCAGSGAIALSVADEVPNAEVHAVELEPAALGW 169

Query: 247 ARYNIAANHVNNVKIVRMSSK-EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
            R N+    +  V++ +       +              +   + R   +  +PP
Sbjct: 170 LRRNVERTGLP-VRVHQADVGIPRSPTDAGRPVAPVGTVLTDLAGRADVVISNPP 223


>gi|322370101|ref|ZP_08044663.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
 gi|320550437|gb|EFW92089.1| Methyltransferase type 11 [Haladaptatus paucihalophilus DX253]
          Length = 226

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNIAANHVNN 258
           V          ++E+ CG G     L R      RV+ V+  +  +E AR  I      N
Sbjct: 38  VDELRLSPGDTVVEMGCGTGANFPHLRRRVGPEGRVIGVDFTRGMLEQARDRIDREGWEN 97

Query: 259 VKIVRMSSKEFT 270
           V IV+  +  F+
Sbjct: 98  VHIVQADAATFS 109


>gi|307256017|ref|ZP_07537805.1| Protein hemK [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865439|gb|EFM97334.1| Protein hemK [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 296

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 21/109 (19%)

Query: 196 VHMLEWVL-AATKGIQGDLLELYCGNGNFSLVLARHFD---RVLAVEIAKPSVEAARYNI 251
              L+W            +L+L  G G  +L LA       ++L V+    +V+ A  N 
Sbjct: 106 EVALDWAYKRLKIQQTLRILDLGTGTGAIALALASELGNNVQILGVDFKAEAVQLAETNR 165

Query: 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
                +NV  ++               F+ L++      +F  I  +PP
Sbjct: 166 QNLGFSNVSFLQSD------------WFSALENQ-----QFDLIVSNPP 197


>gi|302562745|ref|ZP_07315087.1| methyltransferase [Streptomyces griseoflavus Tu4000]
 gi|302480363|gb|EFL43456.1| methyltransferase [Streptomyces griseoflavus Tu4000]
          Length = 229

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 202 VLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261
           V      + G +L++ CG G  ++ LAR    V A+E++  ++E A  +     V  ++ 
Sbjct: 51  VAEVAGLVPGRVLDVGCGEGADAVWLARGGWDVTALEVSGVALERAAGHARDAGVA-IRW 109

Query: 262 VRMSSKEFT 270
           V  +  E  
Sbjct: 110 VHAALTEAA 118


>gi|227529624|ref|ZP_03959673.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227350414|gb|EEJ40705.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 286

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 23/148 (15%)

Query: 112 SQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERL 171
              D  ++      +  D W+     ++  L+    Q           I     +     
Sbjct: 36  GWDDTHLLVHNRELMPSDEWQWFQGAIKRLLNEEPAQY----------IVGSAPFYGRTF 85

Query: 172 TVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLA--R 229
            V    LI                  +++WVL         +L+L  G+G   + LA  R
Sbjct: 86  MVNHDVLIPE-----------AETAELVDWVLKENTSTPLKVLDLGTGSGVIGITLALER 134

Query: 230 HFDRVLAVEIAKPSVEAARYNIAANHVN 257
               V   +++  ++  A+ N+   ++N
Sbjct: 135 PQWNVTLSDVSPAALMVAQKNMQRFNLN 162


>gi|221199351|ref|ZP_03572395.1| UbiE/COQ5 methyltransferase [Burkholderia multivorans CGD2M]
 gi|221205747|ref|ZP_03578762.1| UbiE/COQ5 methyltransferase [Burkholderia multivorans CGD2]
 gi|221174585|gb|EEE07017.1| UbiE/COQ5 methyltransferase [Burkholderia multivorans CGD2]
 gi|221180636|gb|EEE13039.1| UbiE/COQ5 methyltransferase [Burkholderia multivorans CGD2M]
          Length = 250

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEF 269
           +L+L CG G+ S  +A H   V+A ++A+P +           + NV+  +  ++  
Sbjct: 45  VLDLGCGAGHASFAVAPHVREVVAYDLAEPMLVTVDAAARERGLANVRTRQGPAERL 101


>gi|188533368|ref|YP_001907165.1| 3-demethylubiquinone-9 3-methyltransferase [Erwinia tasmaniensis
           Et1/99]
 gi|226725549|sp|B2VIL6|UBIG_ERWT9 RecName: Full=3-demethylubiquinone-9 3-methyltransferase; AltName:
           Full=3,4-dihydroxy-5-hexaprenylbenzoate
           methyltransferase; Short=DHHB methyltransferase
 gi|188028410|emb|CAO96271.1| 3-demethylubiquinone-9 3-methyltransferase [Erwinia tasmaniensis
           Et1/99]
          Length = 243

 Score = 43.8 bits (102), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 194 INVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIA 252
           IN   L+W+     G+ G  +L++ CG G  S  +AR    V  +++    ++ AR +  
Sbjct: 40  INPLRLDWIAQHANGLFGKKVLDVGCGGGILSESMAREGANVTGLDMGAEPLQVARLHAL 99

Query: 253 ANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF 296
            + V N+  V+ + +E       + +     ++  H    +++ 
Sbjct: 100 ESGV-NIDYVQQTVEEHADRFAGQYDVVTCMEMLEHVPDPRSVV 142


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.139    0.423 

Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,558,545,000
Number of Sequences: 14124377
Number of extensions: 268170016
Number of successful extensions: 954952
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 12203
Number of HSP's successfully gapped in prelim test: 14848
Number of HSP's that attempted gapping in prelim test: 907523
Number of HSP's gapped (non-prelim): 28934
length of query: 371
length of database: 4,842,793,630
effective HSP length: 140
effective length of query: 231
effective length of database: 2,865,380,850
effective search space: 661902976350
effective search space used: 661902976350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 82 (36.1 bits)